Citrus Sinensis ID: 021247

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-----
Protein Sequence
MKFAGLKSVENAHEESVWAVTWVPATETRPALLLTGSLDETVKLWRPDDMQLERTNTGHCLGVVSVAAHPSGIIAASASLDSFVRVFDVDTNASIATLEASPSEVWQMQFDPKGTTLAVAGGGSASVKLWDTATWNLIATLSIPRPEGLKPTDKSSSKKFVLSVAWSPDGRRIACGSMDGTISVFDVTRAKFLHHLEGHFMPVRSLVYSPVDPRVLFSASDDTHVHMYDAEGKSLVTAMSGHASWVLSVDASPDGAAITTGSSDRTVKLWDLNMRAAMQSMTNHTDQVWGVSFRPLGGRVVSVSDDKSISLYEYS
Secondary Structure (PSIPRED)
ccccccccccccccccEEEEEEcccccccccEEEEccccccEEEEEcccccEEEccccccccEEEEEEcccccEEEEEEccccEEEEEcccccEEEEEEcccccEEEEEEcccccEEEEEEcccccEEEEEcccccEEEEEcccccccccccccccccccEEEEEEcccccEEEEccccccEEEEEccccEEEcccccccccEEEEEEccccccEEEEEcccccEEEEEccccEEEEccccccccEEEEEEcccccEEEEccccccEEEEEccccccccccccccccEEEEEEcccccEEEEEEccccEEEEEcc
Secondary Structure Prediction (SSPRO)
cccccEEEEEEcccccEEEEEEccccccccEEEEEEccccEEEEEEcccccEEEEEEcccccEEEEEEcccccEEEEEccccEEEEEEcccccEEEEEccccccEEEEEEcccccEEEEEEccccEEEEEEcccccEEEEEccccccccEEEEEccccccEEEEEEcccccEEEEEccccEEEEEEcccccEEEEEEcccccEEEEEEccccccEEEEEccccEEEEEEcccccEEEEEEcccccEEEEEEcccccEEEEcccccEEEEEEcccccEEEEEccccccEEEEEEcccccEEEEcccccEEEEEEcc
Coil and Loop (DISEMBL)
MKFAGLKSVENAHEESVWAVTwvpatetrpallltgsldetvklwrpddmqlertntghcLGVVSVAAHPSGIIAASASLDSFVRvfdvdtnasiatleaspsevwqmqfdpkgttlavagggsasVKLWDTATWNLIAtlsiprpeglkptdkssskkFVLSVawspdgrriacgsmdgtisVFDVTRAKFLHhleghfmpvrslvyspvdprvlfsasddthvhmYDAEGKSLVTAMSGHASwvlsvdaspdgaaittgssdrtVKLWDLNMRAAMQSMTNhtdqvwgvsfrplggrvvsvsddksislyeys
Flexible Loop (DISEMBL)
mkfaglksvenaheesvWAVTWVPATEtrpallltgsldetvKLWRPDDMQLERTNTGHCLGVVSVAAHPSGIIAASASLDSFVRVFDVDTNASiatleaspsevwqMQFDPKGTTLAVAGGGSASVKLWDTATWNLIATlsiprpeglkptdkssskKFVLSVAWSPDGRRIACGSMDGTISVFDVTRAKFLHHLEGHFMPVRSLVYSPVDPRVLFSASDDTHVHMYDAEGKSLVTAMSGHASWVLSVDASPDGaaittgssdrtvKLWDLNMRAAMQSMTNHTDQVWGVSFRPLGgrvvsvsddksislyeys
Low Complexity Region (SEG)
MKFAGLKSVENAHEESVWAVTWVPATETRPALLLTGSLDETVKLWRPDDMQLERTNTGHCLGVVSVAAHPSGIIAASASLDSFVRVFDVDTNASIATLEASPSEVWQMQFDPKGTTLAVAGGGSASVKLWDTATWNLIATLSIPRPEGLKPTDKSSSKKFVLSVAWSPDGRRIACGSMDGTISVFDVTRAKFLHHLEGHFMPVRSLVYSPVDPRVLFSASDDTHVHMYDAEGKSLVTAMSGHASWVLSVDASPDGAAITTGSSDRTVKLWDLNMRAAMQSMTNHTDQVWGVSFRPLGGRVVSVSDDKSISLYEYS
Disordered region (IsUnstruct)
**************ESVWAVTWVPATETRPALLLTGSLDETVKLWRPDDMQLERTNTGHCLGVVSVAAHPSGIIAASASLDSFVRVFDVDTNASIATLEASPSEVWQMQFDPKGTTLAVAGGGSASVKLWDTATWNLIATLSI****************FVLSVAWSPDGRRIACGSMDGTISVFDVTRAKFLHHLEGHFMPVRSLVYSPVDPRVLFSASDDTHVHMYDAEGKSLVTAMSGHASWVLSVDASPDGAAITTG*SDRTVKLWDLNMRAAMQSMTNHTDQVWGVSFRPLGGRVVSV************
Disordered Region (DISOPRED)
MKFAGLKSVENAHEESVWAVTWVPATETRPALLLTGSLDETVKLWRPDDMQLERTNTGHCLGVVSVAAHPSGIIAASASLDSFVRVFDVDTNASIATLEASPSEVWQMQFDPKGTTLAVAGGGSASVKLWDTATWNLIATLSIPRPEGLKPTDKSSSKKFVLSVAWSPDGRRIACGSMDGTISVFDVTRAKFLHHLEGHFMPVRSLVYSPVDPRVLFSASDDTHVHMYDAEGKSLVTAMSGHASWVLSVDASPDGAAITTGSSDRTVKLWDLNMRAAMQSMTNHTDQVWGVSFRPLGGRVVSVSDDKSISLYEYS
Disordered Region (DISEMBL)
MKFAGLKSVENAHEESVWAVTWVPATETRPALLLTGSLDETVKLWRPDDMQLERTNTGHCLGVVSVAAHPSGIIAASASLDSFVRVFDVDTNASIATLEASPSEVWQMQFDPKGTTLAVAGGGSASVKLWDTATWNLIATLSIPRPE***********KFVLSVAWSPDGRRIACGSMDGTISVFDVTRAKFLHHLEGHFMPVRSLVYSPVDPRVLFSASDDTHVHMYDAEGKSLVTAMSGHASWVLSVDASPDGAAITTGSSDRTVKLWDLNMRAAMQSMTNHTDQVWGVSFRPLGGRVVSVSDDKSISLYEYS
Disordered Region (DISPRO)
***AGLKSVENAHEESVWAVTWVPATETRPALLLTGSLDETVKLWRPDDMQLERTNTGHCLGVVSVAAHPSGIIAASASLDSFVRVFDVDTNASIATLEASPSEVWQMQFDPKGTTLAVAGGGSASVKLWDTATWNLIATLSIPRPEGLKPTDKSSSKKFVLSVAWSPDGRRIACGSMDGTISVFDVTRAKFLHHLEGHFMPVRSLVYSPVDPRVLFSASDDTHVHMYDAEGKSLVTAMSGHASWVLSVDASPDGAAITTGSSDRTVKLWDLNMRAAMQSMTNHTDQVWGVSFRPLGGRVVSVSDDKSISLYEYS
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MKFAGLKSVENAHEESVWAVTWVPATETRPALLLTGSLDETVKLWRPDDMQLERTNTGHCLGVVSVAAHPSGIIAASASLDSFVRVFDVDTNASIATLEASPSEVWQMQFDPKGTTLAVAGGGSASVKLWDTATWNLIATLSIPRPEGLKPTDKSSSKKFVLSVAWSPDGRRIACGSMDGTISVFDVTRAKFLHHLEGHFMPVRSLVYSPVDPRVLFSASDDTHVHMYDAEGKSLVTAMSGHASWVLSVDASPDGAAITTGSSDRTVKLWDLNMRAAMQSMTNHTDQVWGVSFRPLGGRVVSVSDDKSISLYEYS
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	315	2.2.26 [Sep-21-2011]
Q6P5M2	305	WD repeat-containing prot	yes	no	0.942	0.973	0.391	1e-62
Q6PBD6	305	WD repeat-containing prot	yes	no	0.942	0.973	0.398	3e-60
Q6GMD2	305	WD repeat-containing prot	N/A	no	0.942	0.973	0.398	3e-59
Q5ZJH5	305	WD repeat-containing prot	yes	no	0.942	0.973	0.385	7e-58
Q32LN7	305	WD repeat-containing prot	yes	no	0.942	0.973	0.385	2e-56
Q9GZS3	305	WD repeat-containing prot	yes	no	0.942	0.973	0.385	4e-56
Q9ERF3	305	WD repeat-containing prot	yes	no	0.942	0.973	0.382	4e-56
Q4V7A0	305	WD repeat-containing prot	yes	no	0.942	0.973	0.382	5e-56
Q26544	301	WD repeat-containing prot	N/A	no	0.914	0.956	0.332	2e-45
Q8YRI1	1526	Uncharacterized WD repeat	yes	no	0.898	0.185	0.343	5e-38

>sp|Q6P5M2|WDR61_DANRE WD repeat-containing protein 61 OS=Danio rerio GN=wdr61 PE=2 SV=1

 Score =  240 bits (612), Expect = 1e-62,   Method: Compositional matrix adjust.
 Identities = 123/314 (39%), Positives = 195/314 (62%), Gaps = 17/314 (5%)

Query: 2   KFAGLKSVENAHEESVWAVTWVPATETRPALLLTGSLDETVKLWRPDD--MQLERTNTGH 59
           +++ L   E+AHE+++W   W  + +     ++TGSLD+ VK+W+  D  ++L+ T  GH
Sbjct: 4   QYSILFKQEHAHEDAIWTAAWGRSEKDGSETIVTGSLDDLVKVWKWSDEKLELQWTLEGH 63

Query: 60  CLGVVSVAAHPSGIIAASASLDSFVRVFDVDTNASIATLEASPSEVWQMQFDPKGTTLAV 119
            LGVVSV    +G IAAS+SLD+ +R++D++T   I +++A P + W + F P    +A 
Sbjct: 64  QLGVVSVNISQNGAIAASSSLDAHIRLWDLETGKQIKSMDAGPVDAWTVAFSPDSKYIAT 123

Query: 120 AGGGSASVKLWDTATWNLIATLSIPRPEGLKPTDKSSSKKFVLSVAWSPDGRRIACGSMD 179
              GS   K+      N+    S     G K     +  KF+LS+A+SPDG+ +A G++D
Sbjct: 124 ---GSHLGKV------NIFGVES-----GKKEHSLDTRGKFILSIAYSPDGKYLASGAID 169

Query: 180 GTISVFDVTRAKFLHHLEGHFMPVRSLVYSPVDPRVLFSASDDTHVHMYDAEGKSLVTAM 239
           G I++FD+   K LH LEGH MP+RSL +SP D ++L +ASDD ++ +YD +  +L   +
Sbjct: 170 GIINIFDIATGKLLHTLEGHAMPIRSLTFSP-DSQLLVTASDDGYIKIYDVQHANLAGTL 228

Query: 240 SGHASWVLSVDASPDGAAITTGSSDRTVKLWDLNMRAAMQSMTNHTDQVWGVSFRPLGGR 299
           SGH SWVLSV  SPD     + SSD+++K+WD + R+ + +  +H DQVW V + P G +
Sbjct: 229 SGHGSWVLSVAFSPDDTHFVSSSSDKSIKVWDTSSRSCVNTFFDHQDQVWSVKYNPTGSK 288

Query: 300 VVSVSDDKSISLYE 313
           +VS  DD++I +Y+
Sbjct: 289 IVSAGDDRAIHIYD 302

Danio rerio (taxid: 7955)

>sp|Q6PBD6|WDR61_XENTR WD repeat-containing protein 61 OS=Xenopus tropicalis GN=wdr61 PE=2 SV=1

 Score =  232 bits (591), Expect = 3e-60,   Method: Compositional matrix adjust.
 Identities = 125/314 (39%), Positives = 195/314 (62%), Gaps = 17/314 (5%)

Query: 2   KFAGLKSVENAHEESVWAVTWVPATETRPALLLTGSLDETVKLWRPDDMQLERTNT--GH 59
           +++ L   E+AHE+++W+V W   +     L+++GSLD+ VK+W+  D +LE  +T  GH
Sbjct: 4   QYSILFKQEHAHEDAIWSVGWGKNSNDGSELVISGSLDDLVKVWKWSDERLELQSTLEGH 63

Query: 60  CLGVVSVAAHPSGIIAASASLDSFVRVFDVDTNASIATLEASPSEVWQMQFDPKGTTLAV 119
            LGVVSV   PSG I AS+SLD+ +R++D+++   I  ++A P + W + F P    LA 
Sbjct: 64  QLGVVSVDVSPSGNIMASSSLDAHIRLWDLESGKQIRAIDAGPVDAWSVAFSPDSQHLA- 122

Query: 120 AGGGSASVKLWDTATWNLIATLSIPRPEGLKPTDKSSSKKFVLSVAWSPDGRRIACGSMD 179
            G     V ++   T             G K     +  KF+LS+A+SPDG+ +A G++D
Sbjct: 123 TGSHVGKVNIFGVET-------------GKKEYSLDTRGKFILSIAYSPDGKYLASGAID 169

Query: 180 GTISVFDVTRAKFLHHLEGHFMPVRSLVYSPVDPRVLFSASDDTHVHMYDAEGKSLVTAM 239
           G I++FD+   K LH LEGH MP+RSL +SP D ++L +ASDD ++ +Y+ +  SL   +
Sbjct: 170 GIINIFDIATGKLLHTLEGHAMPIRSLTFSP-DSQLLVTASDDGYIKIYEVQHASLAATL 228

Query: 240 SGHASWVLSVDASPDGAAITTGSSDRTVKLWDLNMRAAMQSMTNHTDQVWGVSFRPLGGR 299
           SGH SWVL+V  SPD     + SSD++VK+WD++ R  + +  +H DQVWGV +   G +
Sbjct: 229 SGHGSWVLNVAFSPDDTHFVSSSSDKSVKVWDVSARTCVHTFLDHQDQVWGVKYNKNGSK 288

Query: 300 VVSVSDDKSISLYE 313
           +VSV+DD+ I +Y+
Sbjct: 289 IVSVADDQEIHVYD 302

Xenopus tropicalis (taxid: 8364)

>sp|Q6GMD2|WDR61_XENLA WD repeat-containing protein 61 OS=Xenopus laevis GN=wdr61 PE=2 SV=1

 Score =  228 bits (582), Expect = 3e-59,   Method: Compositional matrix adjust.
 Identities = 125/314 (39%), Positives = 193/314 (61%), Gaps = 17/314 (5%)

Query: 2   KFAGLKSVENAHEESVWAVTWVPATETRPALLLTGSLDETVKLWRPDDMQLER--TNTGH 59
           +++ L   E+AHE+++W+V W   +     L+++GSLD+ VK+W+  D +LE      GH
Sbjct: 4   QYSILFKQEHAHEDAIWSVGWGKNSNDGSELVISGSLDDLVKVWKWSDERLEMQWALEGH 63

Query: 60  CLGVVSVAAHPSGIIAASASLDSFVRVFDVDTNASIATLEASPSEVWQMQFDPKGTTLAV 119
            LGVVSV   PSG I AS+SLD+ +R++D+++   I +++A P + W + F P    LA 
Sbjct: 64  QLGVVSVDVSPSGNIMASSSLDAHIRLWDLESGKQIRSIDAGPVDAWSVAFSPDSQHLAT 123

Query: 120 AGGGSASVKLWDTATWNLIATLSIPRPEGLKPTDKSSSKKFVLSVAWSPDGRRIACGSMD 179
            G     V ++   T             G K     +  KF+LS+A+SPDG+ +A G++D
Sbjct: 124 -GSHVGKVNIFGVET-------------GKKEYSLDTRGKFILSIAYSPDGKYLASGAID 169

Query: 180 GTISVFDVTRAKFLHHLEGHFMPVRSLVYSPVDPRVLFSASDDTHVHMYDAEGKSLVTAM 239
           G I++FD+   K LH LEGH MP+RSL +S  D ++L +ASDD ++ +YD +  SL   +
Sbjct: 170 GIINIFDIATGKLLHTLEGHAMPIRSLTFS-TDSQLLVTASDDGYIKIYDVQHASLAATL 228

Query: 240 SGHASWVLSVDASPDGAAITTGSSDRTVKLWDLNMRAAMQSMTNHTDQVWGVSFRPLGGR 299
           SGH SWVL+V  SPD A   + SSD++VK+WD++ R  + +  +H DQVWGV +   G +
Sbjct: 229 SGHGSWVLNVAFSPDDAHFVSSSSDKSVKVWDVSARTCVHTFLDHQDQVWGVKYNRNGSK 288

Query: 300 VVSVSDDKSISLYE 313
           +VSV DD+ I +Y+
Sbjct: 289 IVSVGDDQEIHVYD 302

Xenopus laevis (taxid: 8355)

>sp|Q5ZJH5|WDR61_CHICK WD repeat-containing protein 61 OS=Gallus gallus GN=WDR61 PE=2 SV=1

 Score =  224 bits (570), Expect = 7e-58,   Method: Compositional matrix adjust.
 Identities = 121/314 (38%), Positives = 189/314 (60%), Gaps = 17/314 (5%)

Query: 2   KFAGLKSVENAHEESVWAVTWVPATETRPALLLTGSLDETVKLWRPDD--MQLERTNTGH 59
           ++  L   E AH++++W+V W    +     +++GSLD+ VK+W+ +D  + L+ T  GH
Sbjct: 4   QYGILFKQEQAHDDAIWSVAWGKNKKNGSETVISGSLDDLVKVWKWNDEKLDLQWTLEGH 63

Query: 60  CLGVVSVAAHPSGIIAASASLDSFVRVFDVDTNASIATLEASPSEVWQMQFDPKGTTLAV 119
            LGVVSV    +G IAAS+SLD+ +R++D++T   I +++A P + W + F P    LA 
Sbjct: 64  QLGVVSVDISHTGSIAASSSLDAHIRLWDLETGKQIKSIDAGPVDAWSLAFSPDSQFLAT 123

Query: 120 AGGGSASVKLWDTATWNLIATLSIPRPEGLKPTDKSSSKKFVLSVAWSPDGRRIACGSMD 179
            G     V ++   T             G K     +  KF+LS+A+SPDG+ +A G++D
Sbjct: 124 -GSHVGKVNIFGVET-------------GKKEYSLDTRGKFILSIAYSPDGKYLASGAID 169

Query: 180 GTISVFDVTRAKFLHHLEGHFMPVRSLVYSPVDPRVLFSASDDTHVHMYDAEGKSLVTAM 239
           G I++FD+   K LH LEGH MP+RSL +SP D ++L +ASDD ++ +YD +  +L   +
Sbjct: 170 GIINIFDIATGKLLHTLEGHAMPIRSLTFSP-DSQLLVTASDDGYIKIYDVQHANLAGTL 228

Query: 240 SGHASWVLSVDASPDGAAITTGSSDRTVKLWDLNMRAAMQSMTNHTDQVWGVSFRPLGGR 299
           SGH SWVL+V   PD     + SSD++VK+WD   R  + +  +H DQVWGV +   G +
Sbjct: 229 SGHGSWVLNVAFCPDDTHFVSSSSDKSVKVWDAGTRTCVHTFFDHQDQVWGVKYNGSGSK 288

Query: 300 VVSVSDDKSISLYE 313
           +VSV DD+ I +Y+
Sbjct: 289 IVSVGDDQEIHIYD 302

Gallus gallus (taxid: 9031)

>sp|Q32LN7|WDR61_BOVIN WD repeat-containing protein 61 OS=Bos taurus GN=WDR61 PE=2 SV=1

 Score =  219 bits (558), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 121/314 (38%), Positives = 191/314 (60%), Gaps = 17/314 (5%)

Query: 2   KFAGLKSVENAHEESVWAVTWVPATETRPALLLTGSLDETVKLW--RPDDMQLERTNTGH 59
           +++ L   E AH++++W+V W    +     ++TGSLD+ VK+W  R + + L+ +  GH
Sbjct: 4   QYSILFKQEQAHDDAIWSVAWGSNKKENSETVVTGSLDDLVKVWKWRDEKLDLQWSLEGH 63

Query: 60  CLGVVSVAAHPSGIIAASASLDSFVRVFDVDTNASIATLEASPSEVWQMQFDPKGTTLAV 119
            LGVVSV    +  IAAS+SLD+ +R++D++    I +++A P + W + F P    LA 
Sbjct: 64  QLGVVSVDISHTLPIAASSSLDAHIRLWDLENGKQIKSIDAGPVDAWTLAFSPDSQYLAT 123

Query: 120 AGGGSASVKLWDTATWNLIATLSIPRPEGLKPTDKSSSKKFVLSVAWSPDGRRIACGSMD 179
              G+   K+      N+    S     G K     +  KF+LS+A+SPDG+ +A G++D
Sbjct: 124 ---GTHVGKV------NIFGVES-----GKKEYSLDTRGKFILSIAYSPDGKYLASGAID 169

Query: 180 GTISVFDVTRAKFLHHLEGHFMPVRSLVYSPVDPRVLFSASDDTHVHMYDAEGKSLVTAM 239
           G I++FD+   K LH LEGH MP+RSL +SP D ++L +ASDD ++ +YD +  +L   +
Sbjct: 170 GIINIFDIATGKLLHTLEGHAMPIRSLTFSP-DSQLLVTASDDGYIKIYDVQHANLAGTL 228

Query: 240 SGHASWVLSVDASPDGAAITTGSSDRTVKLWDLNMRAAMQSMTNHTDQVWGVSFRPLGGR 299
           SGHASWVL+V   PD     + SSD++VK+WD+  R  + +  +H DQVWGV +   G +
Sbjct: 229 SGHASWVLNVAFCPDDTHFVSSSSDKSVKVWDVGTRTCVHTFFDHQDQVWGVKYNGNGSK 288

Query: 300 VVSVSDDKSISLYE 313
           +VSV DD+ I +Y+
Sbjct: 289 IVSVGDDQEIHIYD 302

Bos taurus (taxid: 9913)

>sp|Q9GZS3|WDR61_HUMAN WD repeat-containing protein 61 OS=Homo sapiens GN=WDR61 PE=1 SV=1

 Score =  218 bits (556), Expect = 4e-56,   Method: Compositional matrix adjust.
 Identities = 121/314 (38%), Positives = 190/314 (60%), Gaps = 17/314 (5%)

Query: 2   KFAGLKSVENAHEESVWAVTWVPATETRPALLLTGSLDETVKLW--RPDDMQLERTNTGH 59
           ++  L   E AH++++W+V W    +     ++TGSLD+ VK+W  R + + L+ +  GH
Sbjct: 4   QYGILFKQEQAHDDAIWSVAWGTNKKENSETVVTGSLDDLVKVWKWRDERLDLQWSLEGH 63

Query: 60  CLGVVSVAAHPSGIIAASASLDSFVRVFDVDTNASIATLEASPSEVWQMQFDPKGTTLAV 119
            LGVVSV    +  IAAS+SLD+ +R++D++    I +++A P + W + F P    LA 
Sbjct: 64  QLGVVSVDISHTLPIAASSSLDAHIRLWDLENGKQIKSIDAGPVDAWTLAFSPDSQYLAT 123

Query: 120 AGGGSASVKLWDTATWNLIATLSIPRPEGLKPTDKSSSKKFVLSVAWSPDGRRIACGSMD 179
              G+   K+      N+    S     G K     +  KF+LS+A+SPDG+ +A G++D
Sbjct: 124 ---GTHVGKV------NIFGVES-----GKKEYSLDTRGKFILSIAYSPDGKYLASGAID 169

Query: 180 GTISVFDVTRAKFLHHLEGHFMPVRSLVYSPVDPRVLFSASDDTHVHMYDAEGKSLVTAM 239
           G I++FD+   K LH LEGH MP+RSL +SP D ++L +ASDD ++ +YD +  +L   +
Sbjct: 170 GIINIFDIATGKLLHTLEGHAMPIRSLTFSP-DSQLLVTASDDGYIKIYDVQHANLAGTL 228

Query: 240 SGHASWVLSVDASPDGAAITTGSSDRTVKLWDLNMRAAMQSMTNHTDQVWGVSFRPLGGR 299
           SGHASWVL+V   PD     + SSD++VK+WD+  R  + +  +H DQVWGV +   G +
Sbjct: 229 SGHASWVLNVAFCPDDTHFVSSSSDKSVKVWDVGTRTCVHTFFDHQDQVWGVKYNGNGSK 288

Query: 300 VVSVSDDKSISLYE 313
           +VSV DD+ I +Y+
Sbjct: 289 IVSVGDDQEIHIYD 302

Component of the PAF1 complex (PAF1C) which has multiple functions during transcription by RNA polymerase II and is implicated in regulation of development and maintenance of embryonic stem cell pluripotency. PAF1C associates with RNA polymerase II through interaction with POLR2A CTD non-phosphorylated and 'Ser-2'- and 'Ser-5'-phosphorylated forms and is involved in transcriptional elongation, acting both indepentently and synergistically with TCEA1 and in cooperation with the DSIF complex and HTATSF1. PAF1C is required for transcription of Hox and Wnt target genes. PAF1C is involved in hematopoiesis and stimulates transcriptional activity of MLL1; it promotes leukemogenesis though association with MLL-rearranged oncoproteins, such as MLL-MLLT3/AF9 and MLL-MLLT1/ENL. PAF1C is involved in histone modifications such as ubiquitination of histone H2B and methylation on histone H3 'Lys-4' (H3K4me3). PAF1C recruits the RNF20/40 E3 ubiquitin-protein ligase complex and the E2 enzyme UBE2A or UBE2B to chromatin which mediate monoubiquitination of 'Lys-120' of histone H2B (H2BK120ub1); UB2A/B-mediated H2B ubiquitination is proposed to be coupled to transcription. PAF1C is involved in mRNA 3' end formation probably through association with cleavage and poly(A) factors. In case of infection by influenza A strain H3N2, PAF1C associates with viral NS1 protein, thereby regulating gene transcription. Required for mono- and trimethylation on histone H3 'Lys-4' (H3K4me3), dimethylation on histone H3 'Lys-79' (H3K4me3). Required for Hox gene transcription. Component of the SKI complex which is thought to be involved in exosome-mediated RNA decay and associates with transcriptionally active genes in a manner dependent on PAF1C.

Homo sapiens (taxid: 9606)

>sp|Q9ERF3|WDR61_MOUSE WD repeat-containing protein 61 OS=Mus musculus GN=Wdr61 PE=2 SV=1

 Score =  218 bits (555), Expect = 4e-56,   Method: Compositional matrix adjust.
 Identities = 120/314 (38%), Positives = 192/314 (61%), Gaps = 17/314 (5%)

Query: 2   KFAGLKSVENAHEESVWAVTWVPATETRPALLLTGSLDETVKLW--RPDDMQLERTNTGH 59
           +++ L   E AH++++W+V W    +     ++TGSLD+ VK+W  R + ++L+ +  GH
Sbjct: 4   QYSILFKQEQAHDDAIWSVAWETNKKENIETVVTGSLDDLVKVWKWRDERLELQWSLEGH 63

Query: 60  CLGVVSVAAHPSGIIAASASLDSFVRVFDVDTNASIATLEASPSEVWQMQFDPKGTTLAV 119
            LGVVSV    +  IAAS+SLD+ +R++D++    + +++A P + W + F P    LA 
Sbjct: 64  QLGVVSVDISHTLPIAASSSLDAHIRLWDLENGKQMKSIDAGPVDAWTLAFSPDSQYLAT 123

Query: 120 AGGGSASVKLWDTATWNLIATLSIPRPEGLKPTDKSSSKKFVLSVAWSPDGRRIACGSMD 179
              G+   K+      N+    S     G K     +  KF+LS+A+SPDG+ +A G++D
Sbjct: 124 ---GTHMGKV------NIFGVES-----GKKEYSLDTRGKFILSIAYSPDGKYLASGAID 169

Query: 180 GTISVFDVTRAKFLHHLEGHFMPVRSLVYSPVDPRVLFSASDDTHVHMYDAEGKSLVTAM 239
           G I++FD+   K LH LEGH MP+RSL +SP D ++L +ASDD ++ +YD +  +L   +
Sbjct: 170 GIINIFDIATGKLLHTLEGHAMPIRSLTFSP-DSQLLVTASDDGYIKIYDVQHANLAGTL 228

Query: 240 SGHASWVLSVDASPDGAAITTGSSDRTVKLWDLNMRAAMQSMTNHTDQVWGVSFRPLGGR 299
           SGHASWVL+V   PD     + SSD++VK+WD+  R  + +  +H DQVWGV +   G +
Sbjct: 229 SGHASWVLNVAFCPDDTHFVSSSSDKSVKVWDVGTRTCIHTFFDHQDQVWGVKYNGNGSK 288

Query: 300 VVSVSDDKSISLYE 313
           +VSV DD+ I +Y+
Sbjct: 289 IVSVGDDQEIHVYD 302

Component of the PAF1 complex (PAF1C) which has multiple functions during transcription by RNA polymerase II and is implicated in regulation of development and maintenance of embryonic stem cell pluripotency. PAF1C associates with RNA polymerase II through interaction with POLR2A CTD non-phosphorylated and 'Ser-2'- and 'Ser-5'-phosphorylated forms and is involved in transcriptional elongation, acting both indepentently and synergistically with TCEA1 and in cooperation with the DSIF complex and HTATSF1. PAF1C is required for transcription of Hox and Wnt target genes. PAF1C is involved in hematopoiesis and stimulates transcriptional activity of MLL1. PAF1C is involved in histone modifications such as ubiquitination of histone H2B and methylation on histone H3 'Lys-4' (H3K4me3). PAF1C recruits the RNF20/40 E3 ubiquitin-protein ligase complex and the E2 enzyme UBE2A or UBE2B to chromatin which mediate monoubiquitination of 'Lys-120' of histone H2B (H2BK120ub1); UB2A/B-mediated H2B ubiquitination is proposed to be coupled to transcription. PAF1C is involved in mRNA 3' end formation probably through association with cleavage and poly(A) factors. Required for mono- and trimethylation on histone H3 'Lys-4' (H3K4me3), dimethylation on histone H3 'Lys-79' (H3K4me3). Required for Hox gene transcription. Component of the SKI complex which is thought to be involved in exosome-mediated RNA decay and associates with transcriptionally active genes in a manner dependent on PAF1C.

Mus musculus (taxid: 10090)

>sp|Q4V7A0|WDR61_RAT WD repeat-containing protein 61 OS=Rattus norvegicus GN=Wdr61 PE=1 SV=1

 Score =  218 bits (555), Expect = 5e-56,   Method: Compositional matrix adjust.
 Identities = 120/314 (38%), Positives = 192/314 (61%), Gaps = 17/314 (5%)

Query: 2   KFAGLKSVENAHEESVWAVTWVPATETRPALLLTGSLDETVKLW--RPDDMQLERTNTGH 59
           +++ L   E AH++++W+V W    +     ++TGSLD+ VK+W  R + ++L+ +  GH
Sbjct: 4   QYSILFKQEQAHDDAIWSVAWETNKKENIETVVTGSLDDLVKVWKWRDERLELQWSLEGH 63

Query: 60  CLGVVSVAAHPSGIIAASASLDSFVRVFDVDTNASIATLEASPSEVWQMQFDPKGTTLAV 119
            LGVVSV    +  IAAS+SLD+ +R++D++    + +++A P + W + F P    LA 
Sbjct: 64  QLGVVSVDISHTLPIAASSSLDAHIRLWDLENGKQMKSIDAGPVDAWTLAFSPDSQHLAT 123

Query: 120 AGGGSASVKLWDTATWNLIATLSIPRPEGLKPTDKSSSKKFVLSVAWSPDGRRIACGSMD 179
              G+   K+      N+    S     G K     +  KF+LS+A+SPDG+ +A G++D
Sbjct: 124 ---GTHMGKV------NIFGVES-----GKKEYSLDTRGKFILSIAYSPDGKYLASGAID 169

Query: 180 GTISVFDVTRAKFLHHLEGHFMPVRSLVYSPVDPRVLFSASDDTHVHMYDAEGKSLVTAM 239
           G I++FD+   K LH LEGH MP+RSL +SP D ++L +ASDD ++ +YD +  +L   +
Sbjct: 170 GIINIFDIATGKLLHTLEGHAMPIRSLTFSP-DSQLLVTASDDGYIKIYDVQHANLAGTL 228

Query: 240 SGHASWVLSVDASPDGAAITTGSSDRTVKLWDLNMRAAMQSMTNHTDQVWGVSFRPLGGR 299
           SGHASWVL+V   PD     + SSD++VK+WD+  R  + +  +H DQVWGV +   G +
Sbjct: 229 SGHASWVLNVAFCPDDTHFVSSSSDKSVKVWDVGTRTCIHTFFDHQDQVWGVKYNGNGSK 288

Query: 300 VVSVSDDKSISLYE 313
           +VSV DD+ I +Y+
Sbjct: 289 IVSVGDDQEIHVYD 302

Component of the PAF1 complex (PAF1C) which has multiple functions during transcription by RNA polymerase II and is implicated in regulation of development and maintenance of embryonic stem cell pluripotency. PAF1C associates with RNA polymerase II through interaction with POLR2A CTD non-phosphorylated and 'Ser-2'- and 'Ser-5'-phosphorylated forms and is involved in transcriptional elongation, acting both indepentently and synergistically with TCEA1 and in cooperation with the DSIF complex and HTATSF1. PAF1C is required for transcription of Hox and Wnt target genes. PAF1C is involved in hematopoiesis and stimulates transcriptional activity of MLL1. PAF1C is involved in histone modifications such as ubiquitination of histone H2B and methylation on histone H3 'Lys-4' (H3K4me3). PAF1C recruits the RNF20/40 E3 ubiquitin-protein ligase complex and the E2 enzyme UBE2A or UBE2B to chromatin which mediate monoubiquitination of 'Lys-120' of histone H2B (H2BK120ub1); UB2A/B-mediated H2B ubiquitination is proposed to be coupled to transcription. PAF1C is involved in mRNA 3' end formation probably through association with cleavage and poly(A) factors. Required for mono- and trimethylation on histone H3 'Lys-4' (H3K4me3), dimethylation on histone H3 'Lys-79' (H3K4me3). Required for Hox gene transcription. Component of the SKI complex which is thought to be involved in exosome-mediated RNA decay and associates with transcriptionally active genes in a manner dependent on PAF1C.

Rattus norvegicus (taxid: 10116)

>sp|Q26544|WSL17_SCHMA WD repeat-containing protein SL1-17 OS=Schistosoma mansoni PE=2 SV=1

 Score =  182 bits (463), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 102/307 (33%), Positives = 169/307 (55%), Gaps = 19/307 (6%)

Query: 10  ENAHEESVWAVTWVPATETRPALLLTGSLDETVKLWRPDDMQLE--RTNTGHCLGVVSVA 67
           + AH+E +W  TW          ++TGSLD  +  W   + QL+      GH LGV+SV 
Sbjct: 9   KQAHKEGIWCCTWGENRNRNKQYIITGSLDNGLIAWEWTNSQLKCLYQFEGHRLGVISVD 68

Query: 68  AHPSGIIAASASLDSFVRVFDVDTNASIATLEASPSEVWQMQFDPKGTTLAVAGGGSASV 127
            + +G +AAS+SLDS + ++D++T     T +  P++ W + F P    LA  G  +  V
Sbjct: 69  INSTGTLAASSSLDSQILLWDLETGRLTKTYDGDPADTWTIAFSPDSRFLAT-GSHTGCV 127

Query: 128 KLWDTATWNLIATLSIPRPEGLKPTDKSSSKKFVLSVAWSPDGRRIACGSMDGTISVFDV 187
            + +  T     ++ +   EG          KFV  +A+  DG ++A G+++G +S+ D+
Sbjct: 128 NMINVQTAQKEGSIQL---EG----------KFVYXLAYISDGSKLAAGTINGLVSICDL 174

Query: 188 TRAKFLHHLEGHFMPVRSLVYSPVDPRVLFSASDDTHVHMYDA-EGKSLVTAMSGHASWV 246
                +  L+GH  PVRS+ +SP D R+L SASDD  + ++D  +G+ ++ +++GH  WV
Sbjct: 175 ETGS-VQFLDGHATPVRSVSFSP-DGRLLASASDDKQIKVFDVRDGRLVIPSLNGHKGWV 232

Query: 247 LSVDASPDGAAITTGSSDRTVKLWDLNMRAAMQSMTNHTDQVWGVSFRPLGGRVVSVSDD 306
           +SVD + D   + T S+D +V++WDL  +        H DQVW   + P G  ++SV DD
Sbjct: 233 VSVDFASDNRHLVTASTDCSVRIWDLASKEEKHCFNTHEDQVWCARYSPQGNNIISVGDD 292

Query: 307 KSISLYE 313
           +SI +Y+
Sbjct: 293 RSIMIYQ 299

Schistosoma mansoni (taxid: 6183)

>sp|Q8YRI1|YY46_NOSS1 Uncharacterized WD repeat-containing protein alr3466 OS=Nostoc sp. (strain PCC 7120 / UTEX 2576) GN=alr3466 PE=4 SV=1

 Score =  158 bits (400), Expect = 5e-38,   Method: Compositional matrix adjust.
 Identities = 108/314 (34%), Positives = 164/314 (52%), Gaps = 31/314 (9%)

Query: 31   ALLLTGSLDETVKLWRPDDMQLERTNTGHCLGVVSVAAHPSGIIAASASLDSFVRVFDVD 90
            ++L TGS D+TV+LW     Q      GH   V SV     G + AS S D  VR++D+ 
Sbjct: 1003 SMLATGSGDQTVRLWDISSSQCFYIFQGHTSCVRSVVFSSDGAMLASGSDDQTVRLWDIS 1062

Query: 91   TNASIATLEASPSEVWQMQFDPKGTTLAVAGGGSASVKLWDTATWNLIATLS-------- 142
            +   + TL+   S V  + F P G  LA +GG    V+LWD ++ N + TL         
Sbjct: 1063 SGNCLYTLQGHTSCVRSVVFSPDGAMLA-SGGDDQIVRLWDISSGNCLYTLQGYTSWVRF 1121

Query: 143  -IPRPEGLKPTDKSS----------SKK----------FVLSVAWSPDGRRIACGSMDGT 181
             +  P G+   + SS          SKK          +V +VA+SPDG  +A GS D T
Sbjct: 1122 LVFSPNGVTLANGSSDQIVRLWDISSKKCLYTLQGHTNWVNAVAFSPDGATLASGSGDQT 1181

Query: 182  ISVFDVTRAKFLHHLEGHFMPVRSLVYSPVDPRVLFSASDDTHVHMYDAEGKSLVTAMSG 241
            + ++D++ +K L+ L+GH   V S+V++P D   L S S D  V +++      +    G
Sbjct: 1182 VRLWDISSSKCLYILQGHTSWVNSVVFNP-DGSTLASGSSDQTVRLWEINSSKCLCTFQG 1240

Query: 242  HASWVLSVDASPDGAAITTGSSDRTVKLWDLNMRAAMQSMTNHTDQVWGVSFRPLGGRVV 301
            H SWV SV  +PDG+ + +GSSD+TV+LWD++    + +   HT+ V  V+F P G  + 
Sbjct: 1241 HTSWVNSVVFNPDGSMLASGSSDKTVRLWDISSSKCLHTFQGHTNWVNSVAFNPDGSMLA 1300

Query: 302  SVSDDKSISLYEYS 315
            S S D+++ L+E S
Sbjct: 1301 SGSGDQTVRLWEIS 1314

Nostoc sp. (strain PCC 7120 / UTEX 2576) (taxid: 103690)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	315
255546059	831	conserved hypothetical protein [Ricinus	0.990	0.375	0.845	1e-157
225444830	321	PREDICTED: WD repeat-containing protein	1.0	0.981	0.828	1e-155
449452538	321	PREDICTED: WD repeat-containing protein	1.0	0.981	0.831	1e-155
449500459	321	PREDICTED: WD repeat-containing protein	1.0	0.981	0.828	1e-154
147766974	321	hypothetical protein VITISV_009917 [Viti	1.0	0.981	0.825	1e-154
224091188	321	predicted protein [Populus trichocarpa]	1.0	0.981	0.838	1e-154
356565878	321	PREDICTED: WD repeat-containing protein	1.0	0.981	0.806	1e-150
356547907	321	PREDICTED: WD repeat-containing protein	1.0	0.981	0.797	1e-148
15233721	321	WD repeat-containing protein 61 [Arabido	1.0	0.981	0.781	1e-144
297803048	321	hypothetical protein ARALYDRAFT_913505 [	1.0	0.981	0.775	1e-144

>gi|255546059|ref|XP_002514089.1| conserved hypothetical protein [Ricinus communis] gi|223546545|gb|EEF48043.1| conserved hypothetical protein [Ricinus communis]

 Score =  561 bits (1447), Expect = e-157,   Method: Compositional matrix adjust.
 Identities = 269/318 (84%), Positives = 295/318 (92%), Gaps = 6/318 (1%)

Query: 4   AGLKSVENAHEESVWAVTWVPATETRPALLLTGSLDETVKLWRPDDMQLERTNTGHCLGV 63
           +GL+S+ENAH+ESVWA TWVPAT+TR ALLLTGSLDETVKLW  D++ LERTNTGHCLGV
Sbjct: 514 SGLQSIENAHDESVWAATWVPATQTRQALLLTGSLDETVKLWISDELNLERTNTGHCLGV 573

Query: 64  VSVAAHPSGIIAASASLDSFVRVFDVDTNASIATLEASPSEVWQMQFDPKGTTLAVAGGG 123
           VSVAAHPSG+IAASASLDSFVRVFDVDTNA+IATLE+ PSEVWQMQFDPKGTTLAVAGGG
Sbjct: 574 VSVAAHPSGVIAASASLDSFVRVFDVDTNATIATLESPPSEVWQMQFDPKGTTLAVAGGG 633

Query: 124 SASVKLWDTATWNLIATLSIPRPEGLKPTDKSSSKKFVLSVAWSPDGRRIACGSMDGTIS 183
           SASV LWDTATW  IA+LS+PRPEG KP+DK+SSKKFVLSVAWSPDG+R+ACGSMDGTIS
Sbjct: 634 SASVNLWDTATWKQIASLSVPRPEGPKPSDKNSSKKFVLSVAWSPDGKRLACGSMDGTIS 693

Query: 184 VFDVTRAKFLHHLEGHFMPVRSLVYSPVDPRVLFSASDDTHVHMYDAEGKSLVTAMSGHA 243
           VFDV RAKFLHHLEGHFMPVRSLVYSP+DPRVLFSASDD HVHMYD+EGKSL+TAMSGHA
Sbjct: 694 VFDVARAKFLHHLEGHFMPVRSLVYSPIDPRVLFSASDDAHVHMYDSEGKSLITAMSGHA 753

Query: 244 SWVLSVDASPDGAAITTGSSDRTVKLWDLNMRAAMQSMTNHTDQVWGVSFRPLG------ 297
           SWVLSVDASPDGAAI TGSSDRTV+LWDLNMRAA+Q+M+NH+DQVW V+FRP G      
Sbjct: 754 SWVLSVDASPDGAAIATGSSDRTVRLWDLNMRAAVQTMSNHSDQVWAVAFRPPGGTGDRN 813

Query: 298 GRVVSVSDDKSISLYEYS 315
           GR+ SVSDDKSISLY YS
Sbjct: 814 GRLASVSDDKSISLYGYS 831

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225444830|ref|XP_002280723.1| PREDICTED: WD repeat-containing protein 61 [Vitis vinifera] gi|297738621|emb|CBI27866.3| unnamed protein product [Vitis vinifera]

 Score =  554 bits (1427), Expect = e-155,   Method: Compositional matrix adjust.
 Identities = 266/321 (82%), Positives = 292/321 (90%), Gaps = 6/321 (1%)

Query: 1   MKFAGLKSVENAHEESVWAVTWVPATETRPALLLTGSLDETVKLWRPDDMQLERTNTGHC 60
           MK AGLKS+ENAH+ESVWA  WVPATE+RPALLLTGSLDETVKLW PD++ L++ NTGHC
Sbjct: 1   MKLAGLKSIENAHDESVWAAAWVPATESRPALLLTGSLDETVKLWMPDELVLQQNNTGHC 60

Query: 61  LGVVSVAAHPSGIIAASASLDSFVRVFDVDTNASIATLEASPSEVWQMQFDPKGTTLAVA 120
           LGVV+VAAHPSGIIAASASLDSFVRVFDVDTNA+IATLEA PSEVWQMQFDPKG+ LAVA
Sbjct: 61  LGVVAVAAHPSGIIAASASLDSFVRVFDVDTNATIATLEAPPSEVWQMQFDPKGSILAVA 120

Query: 121 GGGSASVKLWDTATWNLIATLSIPRPEGLKPTDKSSSKKFVLSVAWSPDGRRIACGSMDG 180
           GG SAS+KLWDTATW LI TL+IPRPE  KPTD+  +KKFVLSVAWSPDGRR+ACGSMDG
Sbjct: 121 GGSSASIKLWDTATWKLIDTLAIPRPESSKPTDRGGNKKFVLSVAWSPDGRRLACGSMDG 180

Query: 181 TISVFDVTRAKFLHHLEGHFMPVRSLVYSPVDPRVLFSASDDTHVHMYDAEGKSLVTAMS 240
           TIS+FDV RAKFLHHLEGH+MPVRSLVYSPVDPRVLFSASDD HVHMYDAEGKSL+ AMS
Sbjct: 181 TISIFDVNRAKFLHHLEGHYMPVRSLVYSPVDPRVLFSASDDGHVHMYDAEGKSLIGAMS 240

Query: 241 GHASWVLSVDASPDGAAITTGSSDRTVKLWDLNMRAAMQSMTNHTDQVWGVSFRPLG--- 297
           GHASWVLSVD SPDGAAI TGSSD+TV+LWDLNMRAA+Q+M+NH DQVWGV+FRP G   
Sbjct: 241 GHASWVLSVDVSPDGAAIATGSSDKTVRLWDLNMRAAVQTMSNHADQVWGVAFRPPGGAG 300

Query: 298 ---GRVVSVSDDKSISLYEYS 315
              GR+ SVSDDKSISLY+YS
Sbjct: 301 VRAGRLASVSDDKSISLYDYS 321

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449452538|ref|XP_004144016.1| PREDICTED: WD repeat-containing protein 61-like [Cucumis sativus]

 Score =  553 bits (1426), Expect = e-155,   Method: Compositional matrix adjust.
 Identities = 267/321 (83%), Positives = 296/321 (92%), Gaps = 6/321 (1%)

Query: 1   MKFAGLKSVENAHEESVWAVTWVPATETRPALLLTGSLDETVKLWRPDDMQLERTNTGHC 60
           MK AGLKSVENAHEESVWA TWVPAT+TRP+LLLTGSLDETVKLW+ D++ LERTNTGHC
Sbjct: 1   MKLAGLKSVENAHEESVWAATWVPATDTRPSLLLTGSLDETVKLWKSDELDLERTNTGHC 60

Query: 61  LGVVSVAAHPSGIIAASASLDSFVRVFDVDTNASIATLEASPSEVWQMQFDPKGTTLAVA 120
           LGVVSVAAHPSG IAASASLDSFVRVF+VD+N++IATLEA PSEVWQM+F+P+GT LAVA
Sbjct: 61  LGVVSVAAHPSGFIAASASLDSFVRVFEVDSNSTIATLEAPPSEVWQMRFNPEGTMLAVA 120

Query: 121 GGGSASVKLWDTATWNLIATLSIPRPEGLKPTDKSSSKKFVLSVAWSPDGRRIACGSMDG 180
           GGGSAS+KLWDT TW L ATLSIPRPEG KPTDK++SKKFVLSVAWS DGRR+ACGSMDG
Sbjct: 121 GGGSASIKLWDTNTWKLAATLSIPRPEGPKPTDKTASKKFVLSVAWSIDGRRLACGSMDG 180

Query: 181 TISVFDVTRAKFLHHLEGHFMPVRSLVYSPVDPRVLFSASDDTHVHMYDAEGKSLVTAMS 240
           TISVFDV RAKFLHHLEGHFMPVRSLVYSPV+PR+LFSASDD HVHMYDAEGK+L+ AMS
Sbjct: 181 TISVFDVARAKFLHHLEGHFMPVRSLVYSPVEPRLLFSASDDAHVHMYDAEGKTLIGAMS 240

Query: 241 GHASWVLSVDASPDGAAITTGSSDRTVKLWDLNMRAAMQSMTNHTDQVWGVSFRPLG--- 297
           GH+SWVLSVDASPDGAA+ TGSSDRTV+LWDLNMR A+Q+MTNH+DQVWGV+FRP G   
Sbjct: 241 GHSSWVLSVDASPDGAAVATGSSDRTVRLWDLNMRTAVQTMTNHSDQVWGVAFRPPGGVG 300

Query: 298 ---GRVVSVSDDKSISLYEYS 315
              GR+ SVSDDKSISLY+YS
Sbjct: 301 VRSGRLASVSDDKSISLYDYS 321

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449500459|ref|XP_004161102.1| PREDICTED: WD repeat-containing protein 61-like [Cucumis sativus]

 Score =  551 bits (1421), Expect = e-154,   Method: Compositional matrix adjust.
 Identities = 266/321 (82%), Positives = 295/321 (91%), Gaps = 6/321 (1%)

Query: 1   MKFAGLKSVENAHEESVWAVTWVPATETRPALLLTGSLDETVKLWRPDDMQLERTNTGHC 60
           MK AGLKSVENAHEESVWA TWVPAT+TRP+LLLTGSLDETVKLW+ D++ LERTNTGHC
Sbjct: 1   MKLAGLKSVENAHEESVWAATWVPATDTRPSLLLTGSLDETVKLWKSDELDLERTNTGHC 60

Query: 61  LGVVSVAAHPSGIIAASASLDSFVRVFDVDTNASIATLEASPSEVWQMQFDPKGTTLAVA 120
           LGVVSVAAHPSG IAASASLDSFVRVF+VD+N++IATLEA PSEVWQM+F+P+GT LAVA
Sbjct: 61  LGVVSVAAHPSGFIAASASLDSFVRVFEVDSNSTIATLEAPPSEVWQMRFNPEGTMLAVA 120

Query: 121 GGGSASVKLWDTATWNLIATLSIPRPEGLKPTDKSSSKKFVLSVAWSPDGRRIACGSMDG 180
           GGGSAS+KLWDT TW L ATLSIPRPEG KPTDK++SKKFVLSVAWS DGRR+ACGSMDG
Sbjct: 121 GGGSASIKLWDTNTWKLAATLSIPRPEGPKPTDKTASKKFVLSVAWSIDGRRLACGSMDG 180

Query: 181 TISVFDVTRAKFLHHLEGHFMPVRSLVYSPVDPRVLFSASDDTHVHMYDAEGKSLVTAMS 240
           TISVFDV RAKFLHHLEGH MPVRSLVYSPV+PR+LFSASDD HVHMYDAEGK+L+ AMS
Sbjct: 181 TISVFDVARAKFLHHLEGHLMPVRSLVYSPVEPRLLFSASDDAHVHMYDAEGKTLIGAMS 240

Query: 241 GHASWVLSVDASPDGAAITTGSSDRTVKLWDLNMRAAMQSMTNHTDQVWGVSFRPLG--- 297
           GH+SWVLSVDASPDGAA+ TGSSDRTV+LWDLNMR A+Q+MTNH+DQVWGV+FRP G   
Sbjct: 241 GHSSWVLSVDASPDGAAVATGSSDRTVRLWDLNMRTAVQTMTNHSDQVWGVAFRPPGGVG 300

Query: 298 ---GRVVSVSDDKSISLYEYS 315
              GR+ SVSDDKSISLY+YS
Sbjct: 301 VRSGRLASVSDDKSISLYDYS 321

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147766974|emb|CAN67687.1| hypothetical protein VITISV_009917 [Vitis vinifera]

 Score =  551 bits (1420), Expect = e-154,   Method: Compositional matrix adjust.
 Identities = 265/321 (82%), Positives = 291/321 (90%), Gaps = 6/321 (1%)

Query: 1   MKFAGLKSVENAHEESVWAVTWVPATETRPALLLTGSLDETVKLWRPDDMQLERTNTGHC 60
           MK AGLKS+ENAH+ESVWA  WVPATE+RPALLLTGSLDETVKLW PD++ L++ NTGHC
Sbjct: 1   MKLAGLKSIENAHDESVWAAAWVPATESRPALLLTGSLDETVKLWMPDELVLQQNNTGHC 60

Query: 61  LGVVSVAAHPSGIIAASASLDSFVRVFDVDTNASIATLEASPSEVWQMQFDPKGTTLAVA 120
           LGVV+VAAHPSGIIAASASLDSFVRVFDVDTNA+IATLEA PSEVWQMQFDPKG+ LAVA
Sbjct: 61  LGVVAVAAHPSGIIAASASLDSFVRVFDVDTNATIATLEAPPSEVWQMQFDPKGSILAVA 120

Query: 121 GGGSASVKLWDTATWNLIATLSIPRPEGLKPTDKSSSKKFVLSVAWSPDGRRIACGSMDG 180
           GG SAS+KLWDTATW LI TL+IPRPE  KPTD+  +KKFVLSVAWSPDGRR+ACGSMDG
Sbjct: 121 GGSSASIKLWDTATWKLIDTLAIPRPESSKPTDRGGNKKFVLSVAWSPDGRRLACGSMDG 180

Query: 181 TISVFDVTRAKFLHHLEGHFMPVRSLVYSPVDPRVLFSASDDTHVHMYDAEGKSLVTAMS 240
           TIS+FDV RAKFLHHLEGH+ PVRSLVYSPVDPRVLFSASDD HVHMYDAEGKSL+ AMS
Sbjct: 181 TISIFDVNRAKFLHHLEGHYXPVRSLVYSPVDPRVLFSASDDGHVHMYDAEGKSLIGAMS 240

Query: 241 GHASWVLSVDASPDGAAITTGSSDRTVKLWDLNMRAAMQSMTNHTDQVWGVSFRPLG--- 297
           GHASWVLSVD SPDGAAI TGSSD+TV+LWDLNMRAA+Q+M+NH DQVWGV+FRP G   
Sbjct: 241 GHASWVLSVDVSPDGAAIATGSSDKTVRLWDLNMRAAVQTMSNHADQVWGVAFRPPGGAG 300

Query: 298 ---GRVVSVSDDKSISLYEYS 315
              GR+ SVSDDKSISLY+YS
Sbjct: 301 VRAGRLASVSDDKSISLYDYS 321

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224091188|ref|XP_002309202.1| predicted protein [Populus trichocarpa] gi|222855178|gb|EEE92725.1| predicted protein [Populus trichocarpa]

 Score =  549 bits (1415), Expect = e-154,   Method: Compositional matrix adjust.
 Identities = 269/321 (83%), Positives = 294/321 (91%), Gaps = 6/321 (1%)

Query: 1   MKFAGLKSVENAHEESVWAVTWVPATETRPALLLTGSLDETVKLWRPDDMQLERTNTGHC 60
           MK AGLKS+ENAH+ESVWA TW+PATETRPALL+TGSLDETVKLW+PD++ LERTNTGHC
Sbjct: 1   MKLAGLKSIENAHDESVWAATWIPATETRPALLMTGSLDETVKLWKPDELTLERTNTGHC 60

Query: 61  LGVVSVAAHPSGIIAASASLDSFVRVFDVDTNASIATLEASPSEVWQMQFDPKGTTLAVA 120
           LGVVSVAAHPSG IAASASLDSFVRVFDVD+NASIATLEA PSEVWQM+FDPKGTTLAVA
Sbjct: 61  LGVVSVAAHPSGSIAASASLDSFVRVFDVDSNASIATLEAPPSEVWQMKFDPKGTTLAVA 120

Query: 121 GGGSASVKLWDTATWNLIATLSIPRPEGLKPTDKSSSKKFVLSVAWSPDGRRIACGSMDG 180
           GGGSASV+LWDT  W LIATLSIPR EG KPTDK+SSKKFVLSVAWSPDG+R+ACGSMDG
Sbjct: 121 GGGSASVQLWDTEKWKLIATLSIPRQEGPKPTDKNSSKKFVLSVAWSPDGKRVACGSMDG 180

Query: 181 TISVFDVTRAKFLHHLEGHFMPVRSLVYSPVDPRVLFSASDDTHVHMYDAEGKSLVTAMS 240
           TISVFDV RAKFLHHLEGHFMPVRSLVYSP DPRVLFSASDD HVHMYDAEGKS++ A+S
Sbjct: 181 TISVFDVARAKFLHHLEGHFMPVRSLVYSPADPRVLFSASDDAHVHMYDAEGKSMIAALS 240

Query: 241 GHASWVLSVDASPDGAAITTGSSDRTVKLWDLNMRAAMQSMTNHTDQVWGVSF------R 294
           GHASWVLSVDASPDGAAI TGSSD+TV+LWDL MRAA+Q+M+NH DQVWGV+F       
Sbjct: 241 GHASWVLSVDASPDGAAIATGSSDKTVRLWDLGMRAAVQTMSNHVDQVWGVTFRPPGGPG 300

Query: 295 PLGGRVVSVSDDKSISLYEYS 315
           P  GR+ SVSDDKS+SLY+YS
Sbjct: 301 PRAGRLASVSDDKSLSLYDYS 321

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356565878|ref|XP_003551163.1| PREDICTED: WD repeat-containing protein 61-like isoform 1 [Glycine max] gi|356565880|ref|XP_003551164.1| PREDICTED: WD repeat-containing protein 61-like isoform 2 [Glycine max] gi|356565882|ref|XP_003551165.1| PREDICTED: WD repeat-containing protein 61-like isoform 3 [Glycine max]

 Score =  538 bits (1385), Expect = e-150,   Method: Compositional matrix adjust.
 Identities = 259/321 (80%), Positives = 289/321 (90%), Gaps = 6/321 (1%)

Query: 1   MKFAGLKSVENAHEESVWAVTWVPATETRPALLLTGSLDETVKLWRPDDMQLERTNTGHC 60
           MK  GLKSVENAH++SVWAVTWVPAT  RP LLLTGSLDETV+LWR DD+ L+RTNTGHC
Sbjct: 1   MKLGGLKSVENAHDDSVWAVTWVPATANRPPLLLTGSLDETVRLWRSDDLVLDRTNTGHC 60

Query: 61  LGVVSVAAHPSGIIAASASLDSFVRVFDVDTNASIATLEASPSEVWQMQFDPKGTTLAVA 120
           LGV SVAAHP G +AAS+SLDSFVRVFDVD+NA+IATLEA PSEVWQM+FDPKG  LAVA
Sbjct: 61  LGVASVAAHPLGSVAASSSLDSFVRVFDVDSNATIATLEAPPSEVWQMRFDPKGAILAVA 120

Query: 121 GGGSASVKLWDTATWNLIATLSIPRPEGLKPTDKSSSKKFVLSVAWSPDGRRIACGSMDG 180
           GGGSASVKLWDT++W L+ATLSIPRPEG KPTDKS SKKFVLSVAWSPDG+R+ACGSMDG
Sbjct: 121 GGGSASVKLWDTSSWELVATLSIPRPEGQKPTDKSGSKKFVLSVAWSPDGKRLACGSMDG 180

Query: 181 TISVFDVTRAKFLHHLEGHFMPVRSLVYSPVDPRVLFSASDDTHVHMYDAEGKSLVTAMS 240
           TISVFDV RAKFLHHLEGHFMPVRSLVYSP DPR+LF+ASDD +VHMYDAEGK+L+  MS
Sbjct: 181 TISVFDVPRAKFLHHLEGHFMPVRSLVYSPYDPRLLFTASDDGNVHMYDAEGKALIGTMS 240

Query: 241 GHASWVLSVDASPDGAAITTGSSDRTVKLWDLNMRAAMQSMTNHTDQVWGVSFRP----- 295
           GHASWVL VD SPDGAAI TGSSDR+V+LWDLNMRA++Q+M+NH+DQVWGV+FRP     
Sbjct: 241 GHASWVLCVDVSPDGAAIATGSSDRSVRLWDLNMRASVQTMSNHSDQVWGVAFRPPGGSD 300

Query: 296 -LGGRVVSVSDDKSISLYEYS 315
             GGR+ SVSDDKSISLY+YS
Sbjct: 301 VRGGRLASVSDDKSISLYDYS 321

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356547907|ref|XP_003542346.1| PREDICTED: WD repeat-containing protein 61-like [Glycine max]

 Score =  531 bits (1368), Expect = e-148,   Method: Compositional matrix adjust.
 Identities = 256/321 (79%), Positives = 287/321 (89%), Gaps = 6/321 (1%)

Query: 1   MKFAGLKSVENAHEESVWAVTWVPATETRPALLLTGSLDETVKLWRPDDMQLERTNTGHC 60
           MK +GLKSVENAH++SVWAVTWVPAT  RP LLLTGSLDETV+LWR DD+ LE TNTGHC
Sbjct: 1   MKLSGLKSVENAHDDSVWAVTWVPATANRPPLLLTGSLDETVRLWRSDDLVLELTNTGHC 60

Query: 61  LGVVSVAAHPSGIIAASASLDSFVRVFDVDTNASIATLEASPSEVWQMQFDPKGTTLAVA 120
           LGV SVAAHP G + AS+SLDSFVRVFDVD+NA+IATLEA PSEVWQM+FDPKG  LAVA
Sbjct: 61  LGVASVAAHPLGSVVASSSLDSFVRVFDVDSNATIATLEAPPSEVWQMRFDPKGAILAVA 120

Query: 121 GGGSASVKLWDTATWNLIATLSIPRPEGLKPTDKSSSKKFVLSVAWSPDGRRIACGSMDG 180
           GGGSASVKLWDT++W L+ATLSIPRPEG KPTDKS SKKFVLS+AWSPDG+R+ACGSMDG
Sbjct: 121 GGGSASVKLWDTSSWELVATLSIPRPEGQKPTDKSGSKKFVLSIAWSPDGKRLACGSMDG 180

Query: 181 TISVFDVTRAKFLHHLEGHFMPVRSLVYSPVDPRVLFSASDDTHVHMYDAEGKSLVTAMS 240
           TISVFDV RAKFLHHLEGHFMPVRSLVYSP DPR+LF+ASDD +VHMYDAEGK+L+  MS
Sbjct: 181 TISVFDVPRAKFLHHLEGHFMPVRSLVYSPYDPRLLFTASDDGNVHMYDAEGKALIGTMS 240

Query: 241 GHASWVLSVDASPDGAAITTGSSDRTVKLWDLNMRAAMQSMTNHTDQVWGVSFRPLGG-- 298
           GHASWVL VD SPDGAAI TGSSDR+V+LWDLNMRA++Q+M+NH+DQVWGV+FR  GG  
Sbjct: 241 GHASWVLCVDVSPDGAAIATGSSDRSVRLWDLNMRASVQTMSNHSDQVWGVAFRSPGGSD 300

Query: 299 ----RVVSVSDDKSISLYEYS 315
               R+ SVSDDKSISLY+YS
Sbjct: 301 VRGVRLASVSDDKSISLYDYS 321

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15233721|ref|NP_194712.1| WD repeat-containing protein 61 [Arabidopsis thaliana] gi|4914407|emb|CAB43658.1| putative protein [Arabidopsis thaliana] gi|7269882|emb|CAB79741.1| putative protein [Arabidopsis thaliana] gi|30725340|gb|AAP37692.1| At4g29830 [Arabidopsis thaliana] gi|332660283|gb|AEE85683.1| WD repeat-containing protein 61 [Arabidopsis thaliana]

 Score =  518 bits (1333), Expect = e-144,   Method: Compositional matrix adjust.
 Identities = 251/321 (78%), Positives = 284/321 (88%), Gaps = 6/321 (1%)

Query: 1   MKFAGLKSVENAHEESVWAVTWVPATETRPALLLTGSLDETVKLWRPDDMQLERTNTGHC 60
           MK AGLKS+ENAHE+SVWA TWVPATE RPALLLTGSLDETVKLWRPD++ L RTNTGH 
Sbjct: 1   MKLAGLKSIENAHEDSVWAATWVPATEDRPALLLTGSLDETVKLWRPDELDLVRTNTGHS 60

Query: 61  LGVVSVAAHPSGIIAASASLDSFVRVFDVDTNASIATLEASPSEVWQMQFDPKGTTLAVA 120
           LGV ++AAHPSGIIAAS+S+DSFVRVFDVDTNA+IA LEA PSEVW MQF+PKGT LAVA
Sbjct: 61  LGVAALAAHPSGIIAASSSIDSFVRVFDVDTNATIAVLEAPPSEVWGMQFEPKGTILAVA 120

Query: 121 GGGSASVKLWDTATWNLIATLSIPRPEGLKPTDKSSSKKFVLSVAWSPDGRRIACGSMDG 180
           GG SASVKLWDTA+W LI+TLSIPRP+  KP+DK+SSKKFVLSVAWSP+G+R+ACGSMDG
Sbjct: 121 GGSSASVKLWDTASWRLISTLSIPRPDAPKPSDKTSSKKFVLSVAWSPNGKRLACGSMDG 180

Query: 181 TISVFDVTRAKFLHHLEGHFMPVRSLVYSPVDPRVLFSASDDTHVHMYDAEGKSLVTAMS 240
           TI VFDV R+K LH LEGH MPVRSLV+SPVDPRVLFS SDD HV+M+DAEGK+L+ +MS
Sbjct: 181 TICVFDVDRSKLLHQLEGHNMPVRSLVFSPVDPRVLFSGSDDGHVNMHDAEGKTLLGSMS 240

Query: 241 GHASWVLSVDASPDGAAITTGSSDRTVKLWDLNMRAAMQSMTNHTDQVWGVSFRPLG--- 297
           GH SWVLSVDASPDG AI TGSSDRTV+LWDL MRAA+Q+M+NH DQVW V+FRP G   
Sbjct: 241 GHTSWVLSVDASPDGGAIATGSSDRTVRLWDLKMRAAIQTMSNHNDQVWSVAFRPPGGTG 300

Query: 298 ---GRVVSVSDDKSISLYEYS 315
              GR+ SVSDDKS+SLY+YS
Sbjct: 301 VRAGRLASVSDDKSVSLYDYS 321

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297803048|ref|XP_002869408.1| hypothetical protein ARALYDRAFT_913505 [Arabidopsis lyrata subsp. lyrata] gi|297315244|gb|EFH45667.1| hypothetical protein ARALYDRAFT_913505 [Arabidopsis lyrata subsp. lyrata]

 Score =  516 bits (1328), Expect = e-144,   Method: Compositional matrix adjust.
 Identities = 249/321 (77%), Positives = 283/321 (88%), Gaps = 6/321 (1%)

Query: 1   MKFAGLKSVENAHEESVWAVTWVPATETRPALLLTGSLDETVKLWRPDDMQLERTNTGHC 60
           MK AGLKS+ENAHE+SVWA TWVPATE RPALLLTGSLDETVKLWRPD++ L RTNTGH 
Sbjct: 1   MKLAGLKSIENAHEDSVWAATWVPATEDRPALLLTGSLDETVKLWRPDELDLVRTNTGHS 60

Query: 61  LGVVSVAAHPSGIIAASASLDSFVRVFDVDTNASIATLEASPSEVWQMQFDPKGTTLAVA 120
           LGV ++AAHPSGIIAAS+SLDSFVRVFDVDTNA+IA LEA PSEVW MQF+PKGT LAVA
Sbjct: 61  LGVAALAAHPSGIIAASSSLDSFVRVFDVDTNATIAVLEAPPSEVWGMQFEPKGTILAVA 120

Query: 121 GGGSASVKLWDTATWNLIATLSIPRPEGLKPTDKSSSKKFVLSVAWSPDGRRIACGSMDG 180
           GG SASVKLWDT++W LI+TLSIPRPE  KP++K+SSKKFVLSVAWSP+G+R+ACGSMDG
Sbjct: 121 GGSSASVKLWDTSSWRLISTLSIPRPEAPKPSEKTSSKKFVLSVAWSPNGKRLACGSMDG 180

Query: 181 TISVFDVTRAKFLHHLEGHFMPVRSLVYSPVDPRVLFSASDDTHVHMYDAEGKSLVTAMS 240
           TI VFDV R+K LH LEGH MP RSLV+SPVDPR+LFS SDD HV+M+DAEGK+L+ +MS
Sbjct: 181 TICVFDVDRSKLLHQLEGHNMPARSLVFSPVDPRILFSGSDDGHVNMHDAEGKTLLGSMS 240

Query: 241 GHASWVLSVDASPDGAAITTGSSDRTVKLWDLNMRAAMQSMTNHTDQVWGVSFRPLG--- 297
           GH SWVLSVDASPDG AI TGSSDRTV+LWDL MRAA+Q+M+NH DQVW V+FRP G   
Sbjct: 241 GHTSWVLSVDASPDGGAIATGSSDRTVRLWDLKMRAAIQTMSNHNDQVWSVAFRPPGGTG 300

Query: 298 ---GRVVSVSDDKSISLYEYS 315
              GR+ SVSDDKS+SLY+YS
Sbjct: 301 VRAGRLASVSDDKSVSLYDYS 321

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	315
TAIR|locus:2123929	321	VIP3 "AT4G29830" [Arabidopsis	1.0	0.981	0.781	2.9e-135
UNIPROTKB|Q6PBD6	305	wdr61 "WD repeat-containing pr	0.917	0.947	0.405	1e-61
UNIPROTKB|Q6GMD2	305	wdr61 "WD repeat-containing pr	0.917	0.947	0.405	7.1e-61
ZFIN|ZDB-GENE-040426-1851	305	wdr61 "WD repeat domain 61" [D	0.917	0.947	0.398	9e-61
UNIPROTKB|Q5ZJH5	305	WDR61 "WD repeat-containing pr	0.917	0.947	0.392	2.2e-59
UNIPROTKB|F1NFT8	305	WDR61 "WD repeat-containing pr	0.917	0.947	0.392	2.7e-59
UNIPROTKB|Q32LN7	305	WDR61 "WD repeat-containing pr	0.917	0.947	0.392	1.1e-57
UNIPROTKB|E2RBV0	305	WDR61 "Uncharacterized protein	0.917	0.947	0.395	1.4e-57
UNIPROTKB|Q9GZS3	305	WDR61 "WD repeat-containing pr	0.917	0.947	0.392	1.4e-57
MGI|MGI:1917493	305	Wdr61 "WD repeat domain 61" [M	0.917	0.947	0.388	2.2e-57

TAIR|locus:2123929 VIP3 "AT4G29830" [Arabidopsis thaliana (taxid:3702)]

 Score = 1325 (471.5 bits), Expect = 2.9e-135, P = 2.9e-135
 Identities = 251/321 (78%), Positives = 284/321 (88%)

Query:     1 MKFAGLKSVENAHEESVWAVTWVPATETRPALLLTGSLDETVKLWRPDDMQLERTNTGHC 60
             MK AGLKS+ENAHE+SVWA TWVPATE RPALLLTGSLDETVKLWRPD++ L RTNTGH 
Sbjct:     1 MKLAGLKSIENAHEDSVWAATWVPATEDRPALLLTGSLDETVKLWRPDELDLVRTNTGHS 60

Query:    61 LGVVSVAAHPSGIIAASASLDSFVRVFDVDTNASIATLEASPSEVWQMQFDPKGTTLAVA 120
             LGV ++AAHPSGIIAAS+S+DSFVRVFDVDTNA+IA LEA PSEVW MQF+PKGT LAVA
Sbjct:    61 LGVAALAAHPSGIIAASSSIDSFVRVFDVDTNATIAVLEAPPSEVWGMQFEPKGTILAVA 120

Query:   121 GGGSASVKLWDTATWNLIATLSIPRPEGLKPTDKSSSKKFVLSVAWSPDGRRIACGSMDG 180
             GG SASVKLWDTA+W LI+TLSIPRP+  KP+DK+SSKKFVLSVAWSP+G+R+ACGSMDG
Sbjct:   121 GGSSASVKLWDTASWRLISTLSIPRPDAPKPSDKTSSKKFVLSVAWSPNGKRLACGSMDG 180

Query:   181 TISVFDVTRAKFLHHLEGHFMPVRSLVYSPVDPRVLFSASDDTHVHMYDAEGKSLVTAMS 240
             TI VFDV R+K LH LEGH MPVRSLV+SPVDPRVLFS SDD HV+M+DAEGK+L+ +MS
Sbjct:   181 TICVFDVDRSKLLHQLEGHNMPVRSLVFSPVDPRVLFSGSDDGHVNMHDAEGKTLLGSMS 240

Query:   241 GHASWVLSVDASPDGAAITTGSSDRTVKLWDLNMRAAMQSMTNHTDQVWGVSFRPLGG-- 298
             GH SWVLSVDASPDG AI TGSSDRTV+LWDL MRAA+Q+M+NH DQVW V+FRP GG  
Sbjct:   241 GHTSWVLSVDASPDGGAIATGSSDRTVRLWDLKMRAAIQTMSNHNDQVWSVAFRPPGGTG 300

Query:   299 ----RVVSVSDDKSISLYEYS 315
                 R+ SVSDDKS+SLY+YS
Sbjct:   301 VRAGRLASVSDDKSVSLYDYS 321

GO:0000166 "nucleotide binding" evidence=ISS

GO:0005737 "cytoplasm" evidence=ISM

GO:0005834 "heterotrimeric G-protein complex" evidence=ISS

GO:0009910 "negative regulation of flower development" evidence=IGI;IMP

GO:0005515 "protein binding" evidence=IPI

GO:0080008 "Cul4-RING ubiquitin ligase complex" evidence=IPI

GO:0010452 "histone H3-K36 methylation" evidence=IMP

GO:0051568 "histone H3-K4 methylation" evidence=IMP

GO:0005829 "cytosol" evidence=IDA

UNIPROTKB|Q6PBD6 wdr61 "WD repeat-containing protein 61" [Xenopus (Silurana) tropicalis (taxid:8364)]

 Score = 631 (227.2 bits), Expect = 1.0e-61, P = 1.0e-61
 Identities = 124/306 (40%), Positives = 191/306 (62%)

Query:    10 ENAHEESVWAVTWVPATETRPALLLTGSLDETVKLWRPDDMQLERTNT--GHCLGVVSVA 67
             E+AHE+++W+V W   +     L+++GSLD+ VK+W+  D +LE  +T  GH LGVVSV 
Sbjct:    12 EHAHEDAIWSVGWGKNSNDGSELVISGSLDDLVKVWKWSDERLELQSTLEGHQLGVVSVD 71

Query:    68 AHPSGIIAASASLDSFVRVFDVDTNASIATLEASPSEVWQMQFDPKGTTLAVAGGGSASV 127
               PSG I AS+SLD+ +R++D+++   I  ++A P + W + F P    LA  G     V
Sbjct:    72 VSPSGNIMASSSLDAHIRLWDLESGKQIRAIDAGPVDAWSVAFSPDSQHLAT-GSHVGKV 130

Query:   128 KLWDTATWNLIATLSIPRPEGLKPTDKSSSKKFVLSVAWSPDGRRIACGSMDGTISVFDV 187
              ++   T             G K     +  KF+LS+A+SPDG+ +A G++DG I++FD+
Sbjct:   131 NIFGVET-------------GKKEYSLDTRGKFILSIAYSPDGKYLASGAIDGIINIFDI 177

Query:   188 TRAKFLHHLEGHFMPVRSLVYSPVDPRVLFSASDDTHVHMYDAEGKSLVTAMSGHASWVL 247
                K LH LEGH MP+RSL +SP D ++L +ASDD ++ +Y+ +  SL   +SGH SWVL
Sbjct:   178 ATGKLLHTLEGHAMPIRSLTFSP-DSQLLVTASDDGYIKIYEVQHASLAATLSGHGSWVL 236

Query:   248 SVDASPDGAAITTGSSDRTVKLWDLNMRAAMQSMTNHTDQVWGVSFRPLGGRVVSVSDDK 307
             +V  SPD     + SSD++VK+WD++ R  + +  +H DQVWGV +   G ++VSV+DD+
Sbjct:   237 NVAFSPDDTHFVSSSSDKSVKVWDVSARTCVHTFLDHQDQVWGVKYNKNGSKIVSVADDQ 296

Query:   308 SISLYE 313
              I +Y+
Sbjct:   297 EIHVYD 302

GO:0005634 "nucleus" evidence=ISS

GO:0005737 "cytoplasm" evidence=ISS

GO:0016593 "Cdc73/Paf1 complex" evidence=ISS

GO:0032968 "positive regulation of transcription elongation from RNA polymerase II promoter" evidence=ISS

GO:0035327 "transcriptionally active chromatin" evidence=ISS

GO:0045944 "positive regulation of transcription from RNA polymerase II promoter" evidence=ISS

GO:0051571 "positive regulation of histone H3-K4 methylation" evidence=ISS

GO:0055087 "Ski complex" evidence=ISS

GO:0080182 "histone H3-K4 trimethylation" evidence=ISS

GO:2001162 "positive regulation of histone H3-K79 methylation" evidence=ISS

UNIPROTKB|Q6GMD2 wdr61 "WD repeat-containing protein 61" [Xenopus laevis (taxid:8355)]

 Score = 623 (224.4 bits), Expect = 7.1e-61, P = 7.1e-61
 Identities = 124/306 (40%), Positives = 189/306 (61%)

Query:    10 ENAHEESVWAVTWVPATETRPALLLTGSLDETVKLWRPDDMQLER--TNTGHCLGVVSVA 67
             E+AHE+++W+V W   +     L+++GSLD+ VK+W+  D +LE      GH LGVVSV 
Sbjct:    12 EHAHEDAIWSVGWGKNSNDGSELVISGSLDDLVKVWKWSDERLEMQWALEGHQLGVVSVD 71

Query:    68 AHPSGIIAASASLDSFVRVFDVDTNASIATLEASPSEVWQMQFDPKGTTLAVAGGGSASV 127
               PSG I AS+SLD+ +R++D+++   I +++A P + W + F P    LA  G     V
Sbjct:    72 VSPSGNIMASSSLDAHIRLWDLESGKQIRSIDAGPVDAWSVAFSPDSQHLAT-GSHVGKV 130

Query:   128 KLWDTATWNLIATLSIPRPEGLKPTDKSSSKKFVLSVAWSPDGRRIACGSMDGTISVFDV 187
              ++   T             G K     +  KF+LS+A+SPDG+ +A G++DG I++FD+
Sbjct:   131 NIFGVET-------------GKKEYSLDTRGKFILSIAYSPDGKYLASGAIDGIINIFDI 177

Query:   188 TRAKFLHHLEGHFMPVRSLVYSPVDPRVLFSASDDTHVHMYDAEGKSLVTAMSGHASWVL 247
                K LH LEGH MP+RSL +S  D ++L +ASDD ++ +YD +  SL   +SGH SWVL
Sbjct:   178 ATGKLLHTLEGHAMPIRSLTFS-TDSQLLVTASDDGYIKIYDVQHASLAATLSGHGSWVL 236

Query:   248 SVDASPDGAAITTGSSDRTVKLWDLNMRAAMQSMTNHTDQVWGVSFRPLGGRVVSVSDDK 307
             +V  SPD A   + SSD++VK+WD++ R  + +  +H DQVWGV +   G ++VSV DD+
Sbjct:   237 NVAFSPDDAHFVSSSSDKSVKVWDVSARTCVHTFLDHQDQVWGVKYNRNGSKIVSVGDDQ 296

Query:   308 SISLYE 313
              I +Y+
Sbjct:   297 EIHVYD 302

GO:0005634 "nucleus" evidence=ISS

GO:0005737 "cytoplasm" evidence=ISS

GO:0016593 "Cdc73/Paf1 complex" evidence=ISS

GO:0032968 "positive regulation of transcription elongation from RNA polymerase II promoter" evidence=ISS

GO:0035327 "transcriptionally active chromatin" evidence=ISS

GO:0045638 "negative regulation of myeloid cell differentiation" evidence=ISS

GO:0045944 "positive regulation of transcription from RNA polymerase II promoter" evidence=ISS

GO:0051571 "positive regulation of histone H3-K4 methylation" evidence=ISS

GO:0055087 "Ski complex" evidence=ISS

GO:0080182 "histone H3-K4 trimethylation" evidence=ISS

GO:2001162 "positive regulation of histone H3-K79 methylation" evidence=ISS

ZFIN|ZDB-GENE-040426-1851 wdr61 "WD repeat domain 61" [Danio rerio (taxid:7955)]

 Score = 622 (224.0 bits), Expect = 9.0e-61, P = 9.0e-61
 Identities = 122/306 (39%), Positives = 191/306 (62%)

Query:    10 ENAHEESVWAVTWVPATETRPALLLTGSLDETVKLWRPDD--MQLERTNTGHCLGVVSVA 67
             E+AHE+++W   W  + +     ++TGSLD+ VK+W+  D  ++L+ T  GH LGVVSV 
Sbjct:    12 EHAHEDAIWTAAWGRSEKDGSETIVTGSLDDLVKVWKWSDEKLELQWTLEGHQLGVVSVN 71

Query:    68 AHPSGIIAASASLDSFVRVFDVDTNASIATLEASPSEVWQMQFDPKGTTLAVAGGGSASV 127
                +G IAAS+SLD+ +R++D++T   I +++A P + W + F P    +A    GS   
Sbjct:    72 ISQNGAIAASSSLDAHIRLWDLETGKQIKSMDAGPVDAWTVAFSPDSKYIAT---GSHLG 128

Query:   128 KLWDTATWNLIATLSIPRPEGLKPTDKSSSKKFVLSVAWSPDGRRIACGSMDGTISVFDV 187
             K+      N+    S     G K     +  KF+LS+A+SPDG+ +A G++DG I++FD+
Sbjct:   129 KV------NIFGVES-----GKKEHSLDTRGKFILSIAYSPDGKYLASGAIDGIINIFDI 177

Query:   188 TRAKFLHHLEGHFMPVRSLVYSPVDPRVLFSASDDTHVHMYDAEGKSLVTAMSGHASWVL 247
                K LH LEGH MP+RSL +SP D ++L +ASDD ++ +YD +  +L   +SGH SWVL
Sbjct:   178 ATGKLLHTLEGHAMPIRSLTFSP-DSQLLVTASDDGYIKIYDVQHANLAGTLSGHGSWVL 236

Query:   248 SVDASPDGAAITTGSSDRTVKLWDLNMRAAMQSMTNHTDQVWGVSFRPLGGRVVSVSDDK 307
             SV  SPD     + SSD+++K+WD + R+ + +  +H DQVW V + P G ++VS  DD+
Sbjct:   237 SVAFSPDDTHFVSSSSDKSIKVWDTSSRSCVNTFFDHQDQVWSVKYNPTGSKIVSAGDDR 296

Query:   308 SISLYE 313
             +I +Y+
Sbjct:   297 AIHIYD 302

GO:0003674 "molecular_function" evidence=ND

GO:0016593 "Cdc73/Paf1 complex" evidence=ISS

GO:0035327 "transcriptionally active chromatin" evidence=ISS

GO:0005737 "cytoplasm" evidence=ISS

GO:0032968 "positive regulation of transcription elongation from RNA polymerase II promoter" evidence=ISS

GO:0045944 "positive regulation of transcription from RNA polymerase II promoter" evidence=ISS

GO:0055087 "Ski complex" evidence=ISS

UNIPROTKB|Q5ZJH5 WDR61 "WD repeat-containing protein 61" [Gallus gallus (taxid:9031)]

 Score = 609 (219.4 bits), Expect = 2.2e-59, P = 2.2e-59
 Identities = 120/306 (39%), Positives = 186/306 (60%)

Query:    10 ENAHEESVWAVTWVPATETRPALLLTGSLDETVKLWRPDD--MQLERTNTGHCLGVVSVA 67
             E AH++++W+V W    +     +++GSLD+ VK+W+ +D  + L+ T  GH LGVVSV 
Sbjct:    12 EQAHDDAIWSVAWGKNKKNGSETVISGSLDDLVKVWKWNDEKLDLQWTLEGHQLGVVSVD 71

Query:    68 AHPSGIIAASASLDSFVRVFDVDTNASIATLEASPSEVWQMQFDPKGTTLAVAGGGSASV 127
                +G IAAS+SLD+ +R++D++T   I +++A P + W + F P    LA  G     V
Sbjct:    72 ISHTGSIAASSSLDAHIRLWDLETGKQIKSIDAGPVDAWSLAFSPDSQFLAT-GSHVGKV 130

Query:   128 KLWDTATWNLIATLSIPRPEGLKPTDKSSSKKFVLSVAWSPDGRRIACGSMDGTISVFDV 187
              ++   T             G K     +  KF+LS+A+SPDG+ +A G++DG I++FD+
Sbjct:   131 NIFGVET-------------GKKEYSLDTRGKFILSIAYSPDGKYLASGAIDGIINIFDI 177

Query:   188 TRAKFLHHLEGHFMPVRSLVYSPVDPRVLFSASDDTHVHMYDAEGKSLVTAMSGHASWVL 247
                K LH LEGH MP+RSL +SP D ++L +ASDD ++ +YD +  +L   +SGH SWVL
Sbjct:   178 ATGKLLHTLEGHAMPIRSLTFSP-DSQLLVTASDDGYIKIYDVQHANLAGTLSGHGSWVL 236

Query:   248 SVDASPDGAAITTGSSDRTVKLWDLNMRAAMQSMTNHTDQVWGVSFRPLGGRVVSVSDDK 307
             +V   PD     + SSD++VK+WD   R  + +  +H DQVWGV +   G ++VSV DD+
Sbjct:   237 NVAFCPDDTHFVSSSSDKSVKVWDAGTRTCVHTFFDHQDQVWGVKYNGSGSKIVSVGDDQ 296

Query:   308 SISLYE 313
              I +Y+
Sbjct:   297 EIHIYD 302

GO:0032968 "positive regulation of transcription elongation from RNA polymerase II promoter" evidence=ISS

GO:0045944 "positive regulation of transcription from RNA polymerase II promoter" evidence=ISS

GO:0016593 "Cdc73/Paf1 complex" evidence=ISS

GO:0045638 "negative regulation of myeloid cell differentiation" evidence=ISS

GO:0051571 "positive regulation of histone H3-K4 methylation" evidence=ISS

GO:2001162 "positive regulation of histone H3-K79 methylation" evidence=ISS

GO:0005634 "nucleus" evidence=ISS

GO:0005737 "cytoplasm" evidence=ISS

GO:0035327 "transcriptionally active chromatin" evidence=ISS

GO:0055087 "Ski complex" evidence=ISS

GO:0080182 "histone H3-K4 trimethylation" evidence=ISS

UNIPROTKB|F1NFT8 WDR61 "WD repeat-containing protein 61" [Gallus gallus (taxid:9031)]

 Score = 608 (219.1 bits), Expect = 2.7e-59, P = 2.7e-59
 Identities = 120/306 (39%), Positives = 186/306 (60%)

Query:    10 ENAHEESVWAVTWVPATETRPALLLTGSLDETVKLWRPDD--MQLERTNTGHCLGVVSVA 67
             E AH++++W+V W    +     +++GSLD+ VK+W+ +D  + L+ T  GH LGVVSV 
Sbjct:    12 EQAHDDAIWSVAWGKNKKDGSETVISGSLDDLVKVWKWNDEKLDLQWTLEGHQLGVVSVD 71

Query:    68 AHPSGIIAASASLDSFVRVFDVDTNASIATLEASPSEVWQMQFDPKGTTLAVAGGGSASV 127
                +G IAAS+SLD+ +R++D++T   I +++A P + W + F P    LA  G     V
Sbjct:    72 ISHTGSIAASSSLDAHIRLWDLETGKQIKSIDAGPVDAWSLAFSPDSQFLAT-GSHVGKV 130

Query:   128 KLWDTATWNLIATLSIPRPEGLKPTDKSSSKKFVLSVAWSPDGRRIACGSMDGTISVFDV 187
              ++   T             G K     +  KF+LS+A+SPDG+ +A G++DG I++FD+
Sbjct:   131 NIFGVET-------------GKKEYSLDTRGKFILSIAYSPDGKYLASGAIDGIINIFDI 177

Query:   188 TRAKFLHHLEGHFMPVRSLVYSPVDPRVLFSASDDTHVHMYDAEGKSLVTAMSGHASWVL 247
                K LH LEGH MP+RSL +SP D ++L +ASDD ++ +YD +  +L   +SGH SWVL
Sbjct:   178 ATGKLLHTLEGHAMPIRSLTFSP-DSQLLVTASDDGYIKIYDVQHANLAGTLSGHGSWVL 236

Query:   248 SVDASPDGAAITTGSSDRTVKLWDLNMRAAMQSMTNHTDQVWGVSFRPLGGRVVSVSDDK 307
             +V   PD     + SSD++VK+WD   R  + +  +H DQVWGV +   G ++VSV DD+
Sbjct:   237 NVAFCPDDTHFVSSSSDKSVKVWDAGTRTCVHTFFDHQDQVWGVKYNGSGSKIVSVGDDQ 296

Query:   308 SISLYE 313
              I +Y+
Sbjct:   297 EIHIYD 302

GO:0016593 "Cdc73/Paf1 complex" evidence=IEA

GO:0032968 "positive regulation of transcription elongation from RNA polymerase II promoter" evidence=IEA

GO:0035327 "transcriptionally active chromatin" evidence=IEA

GO:0045638 "negative regulation of myeloid cell differentiation" evidence=IEA

GO:0045944 "positive regulation of transcription from RNA polymerase II promoter" evidence=IEA

GO:0051571 "positive regulation of histone H3-K4 methylation" evidence=IEA

GO:0055087 "Ski complex" evidence=IEA

GO:0080182 "histone H3-K4 trimethylation" evidence=IEA

GO:2001162 "positive regulation of histone H3-K79 methylation" evidence=IEA

UNIPROTKB|Q32LN7 WDR61 "WD repeat-containing protein 61" [Bos taurus (taxid:9913)]

 Score = 593 (213.8 bits), Expect = 1.1e-57, P = 1.1e-57
 Identities = 120/306 (39%), Positives = 187/306 (61%)

Query:    10 ENAHEESVWAVTWVPATETRPALLLTGSLDETVKLW--RPDDMQLERTNTGHCLGVVSVA 67
             E AH++++W+V W    +     ++TGSLD+ VK+W  R + + L+ +  GH LGVVSV 
Sbjct:    12 EQAHDDAIWSVAWGSNKKENSETVVTGSLDDLVKVWKWRDEKLDLQWSLEGHQLGVVSVD 71

Query:    68 AHPSGIIAASASLDSFVRVFDVDTNASIATLEASPSEVWQMQFDPKGTTLAVAGGGSASV 127
                +  IAAS+SLD+ +R++D++    I +++A P + W + F P    LA    G+   
Sbjct:    72 ISHTLPIAASSSLDAHIRLWDLENGKQIKSIDAGPVDAWTLAFSPDSQYLAT---GTHVG 128

Query:   128 KLWDTATWNLIATLSIPRPEGLKPTDKSSSKKFVLSVAWSPDGRRIACGSMDGTISVFDV 187
             K+      N+    S     G K     +  KF+LS+A+SPDG+ +A G++DG I++FD+
Sbjct:   129 KV------NIFGVES-----GKKEYSLDTRGKFILSIAYSPDGKYLASGAIDGIINIFDI 177

Query:   188 TRAKFLHHLEGHFMPVRSLVYSPVDPRVLFSASDDTHVHMYDAEGKSLVTAMSGHASWVL 247
                K LH LEGH MP+RSL +SP D ++L +ASDD ++ +YD +  +L   +SGHASWVL
Sbjct:   178 ATGKLLHTLEGHAMPIRSLTFSP-DSQLLVTASDDGYIKIYDVQHANLAGTLSGHASWVL 236

Query:   248 SVDASPDGAAITTGSSDRTVKLWDLNMRAAMQSMTNHTDQVWGVSFRPLGGRVVSVSDDK 307
             +V   PD     + SSD++VK+WD+  R  + +  +H DQVWGV +   G ++VSV DD+
Sbjct:   237 NVAFCPDDTHFVSSSSDKSVKVWDVGTRTCVHTFFDHQDQVWGVKYNGNGSKIVSVGDDQ 296

Query:   308 SISLYE 313
              I +Y+
Sbjct:   297 EIHIYD 302

GO:0080182 "histone H3-K4 trimethylation" evidence=ISS

GO:0055087 "Ski complex" evidence=ISS

GO:0035327 "transcriptionally active chromatin" evidence=ISS

GO:0005737 "cytoplasm" evidence=ISS

GO:0005634 "nucleus" evidence=ISS

GO:2001162 "positive regulation of histone H3-K79 methylation" evidence=ISS

GO:0051571 "positive regulation of histone H3-K4 methylation" evidence=ISS

GO:0045638 "negative regulation of myeloid cell differentiation" evidence=ISS

GO:0016593 "Cdc73/Paf1 complex" evidence=ISS

GO:0045944 "positive regulation of transcription from RNA polymerase II promoter" evidence=ISS

GO:0032968 "positive regulation of transcription elongation from RNA polymerase II promoter" evidence=ISS

GO:0016055 "Wnt receptor signaling pathway" evidence=IEA

GO:0006351 "transcription, DNA-dependent" evidence=IEA

UNIPROTKB|E2RBV0 WDR61 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 592 (213.5 bits), Expect = 1.4e-57, P = 1.4e-57
 Identities = 121/306 (39%), Positives = 187/306 (61%)

Query:    10 ENAHEESVWAVTWVPATETRPALLLTGSLDETVKLWRPDD--MQLERTNTGHCLGVVSVA 67
             E AH++++W+V W    +     ++TGSLD+ VK+W+  D  + L+ +  GH LGVVSV 
Sbjct:    12 EQAHDDAIWSVAWGTNKKENSETVVTGSLDDLVKVWKWCDERLDLQWSLEGHQLGVVSVD 71

Query:    68 AHPSGIIAASASLDSFVRVFDVDTNASIATLEASPSEVWQMQFDPKGTTLAVAGGGSASV 127
                +  IAAS+SLD+ +R++D+D    I +++A P + W + F P    LA    G+   
Sbjct:    72 ISHTLPIAASSSLDAHIRLWDLDNGKQIKSIDAGPVDAWTLAFSPDSQYLAT---GTHVG 128

Query:   128 KLWDTATWNLIATLSIPRPEGLKPTDKSSSKKFVLSVAWSPDGRRIACGSMDGTISVFDV 187
             K+      N+    S     G K     +  KF+LS+A+SPDG+ +A G++DG I++FD+
Sbjct:   129 KV------NIFGVES-----GKKEYSLDTRGKFILSIAYSPDGKYLASGAIDGIINIFDI 177

Query:   188 TRAKFLHHLEGHFMPVRSLVYSPVDPRVLFSASDDTHVHMYDAEGKSLVTAMSGHASWVL 247
                K LH LEGH MP+RSL +SP D ++L +ASDD ++ +YD +  +L   +SGHASWVL
Sbjct:   178 ATGKLLHTLEGHAMPIRSLTFSP-DSQLLVTASDDGYIKIYDVQHANLAGTLSGHASWVL 236

Query:   248 SVDASPDGAAITTGSSDRTVKLWDLNMRAAMQSMTNHTDQVWGVSFRPLGGRVVSVSDDK 307
             +V   PD     + SSD++VK+WD+  R  + +  +H DQVWGV +   G ++VSV DD+
Sbjct:   237 NVAFCPDDTHFVSSSSDKSVKVWDVGTRTCVHTFFDHQDQVWGVKYNGNGSKIVSVGDDQ 296

Query:   308 SISLYE 313
              I +Y+
Sbjct:   297 EIHVYD 302

GO:2001162 "positive regulation of histone H3-K79 methylation" evidence=IEA

GO:0080182 "histone H3-K4 trimethylation" evidence=IEA

GO:0055087 "Ski complex" evidence=IEA

GO:0051571 "positive regulation of histone H3-K4 methylation" evidence=IEA

GO:0045944 "positive regulation of transcription from RNA polymerase II promoter" evidence=IEA

GO:0045638 "negative regulation of myeloid cell differentiation" evidence=IEA

GO:0035327 "transcriptionally active chromatin" evidence=IEA

GO:0032968 "positive regulation of transcription elongation from RNA polymerase II promoter" evidence=IEA

GO:0016593 "Cdc73/Paf1 complex" evidence=IEA

UNIPROTKB|Q9GZS3 WDR61 "WD repeat-containing protein 61" [Homo sapiens (taxid:9606)]

 Score = 592 (213.5 bits), Expect = 1.4e-57, P = 1.4e-57
 Identities = 120/306 (39%), Positives = 187/306 (61%)

Query:    10 ENAHEESVWAVTWVPATETRPALLLTGSLDETVKLW--RPDDMQLERTNTGHCLGVVSVA 67
             E AH++++W+V W    +     ++TGSLD+ VK+W  R + + L+ +  GH LGVVSV 
Sbjct:    12 EQAHDDAIWSVAWGTNKKENSETVVTGSLDDLVKVWKWRDERLDLQWSLEGHQLGVVSVD 71

Query:    68 AHPSGIIAASASLDSFVRVFDVDTNASIATLEASPSEVWQMQFDPKGTTLAVAGGGSASV 127
                +  IAAS+SLD+ +R++D++    I +++A P + W + F P    LA    G+   
Sbjct:    72 ISHTLPIAASSSLDAHIRLWDLENGKQIKSIDAGPVDAWTLAFSPDSQYLAT---GTHVG 128

Query:   128 KLWDTATWNLIATLSIPRPEGLKPTDKSSSKKFVLSVAWSPDGRRIACGSMDGTISVFDV 187
             K+      N+    S     G K     +  KF+LS+A+SPDG+ +A G++DG I++FD+
Sbjct:   129 KV------NIFGVES-----GKKEYSLDTRGKFILSIAYSPDGKYLASGAIDGIINIFDI 177

Query:   188 TRAKFLHHLEGHFMPVRSLVYSPVDPRVLFSASDDTHVHMYDAEGKSLVTAMSGHASWVL 247
                K LH LEGH MP+RSL +SP D ++L +ASDD ++ +YD +  +L   +SGHASWVL
Sbjct:   178 ATGKLLHTLEGHAMPIRSLTFSP-DSQLLVTASDDGYIKIYDVQHANLAGTLSGHASWVL 236

Query:   248 SVDASPDGAAITTGSSDRTVKLWDLNMRAAMQSMTNHTDQVWGVSFRPLGGRVVSVSDDK 307
             +V   PD     + SSD++VK+WD+  R  + +  +H DQVWGV +   G ++VSV DD+
Sbjct:   237 NVAFCPDDTHFVSSSSDKSVKVWDVGTRTCVHTFFDHQDQVWGVKYNGNGSKIVSVGDDQ 296

Query:   308 SISLYE 313
              I +Y+
Sbjct:   297 EIHIYD 302

GO:0006351 "transcription, DNA-dependent" evidence=IEA

GO:0016055 "Wnt receptor signaling pathway" evidence=IEA

GO:0016593 "Cdc73/Paf1 complex" evidence=IDA

GO:0032968 "positive regulation of transcription elongation from RNA polymerase II promoter" evidence=IDA

GO:0045944 "positive regulation of transcription from RNA polymerase II promoter" evidence=IDA

GO:0045638 "negative regulation of myeloid cell differentiation" evidence=IDA

GO:0055087 "Ski complex" evidence=IDA

GO:0005737 "cytoplasm" evidence=IDA

GO:0005634 "nucleus" evidence=IDA

GO:0035327 "transcriptionally active chromatin" evidence=IDA

GO:0051571 "positive regulation of histone H3-K4 methylation" evidence=IMP

GO:2001162 "positive regulation of histone H3-K79 methylation" evidence=IMP

GO:0080182 "histone H3-K4 trimethylation" evidence=IMP

GO:0005515 "protein binding" evidence=IPI

GO:0005730 "nucleolus" evidence=IDA

MGI|MGI:1917493 Wdr61 "WD repeat domain 61" [Mus musculus (taxid:10090)]

 Score = 590 (212.7 bits), Expect = 2.2e-57, P = 2.2e-57
 Identities = 119/306 (38%), Positives = 188/306 (61%)

Query:    10 ENAHEESVWAVTWVPATETRPALLLTGSLDETVKLW--RPDDMQLERTNTGHCLGVVSVA 67
             E AH++++W+V W    +     ++TGSLD+ VK+W  R + ++L+ +  GH LGVVSV 
Sbjct:    12 EQAHDDAIWSVAWETNKKENIETVVTGSLDDLVKVWKWRDERLELQWSLEGHQLGVVSVD 71

Query:    68 AHPSGIIAASASLDSFVRVFDVDTNASIATLEASPSEVWQMQFDPKGTTLAVAGGGSASV 127
                +  IAAS+SLD+ +R++D++    + +++A P + W + F P    LA    G+   
Sbjct:    72 ISHTLPIAASSSLDAHIRLWDLENGKQMKSIDAGPVDAWTLAFSPDSQYLAT---GTHMG 128

Query:   128 KLWDTATWNLIATLSIPRPEGLKPTDKSSSKKFVLSVAWSPDGRRIACGSMDGTISVFDV 187
             K+      N+    S     G K     +  KF+LS+A+SPDG+ +A G++DG I++FD+
Sbjct:   129 KV------NIFGVES-----GKKEYSLDTRGKFILSIAYSPDGKYLASGAIDGIINIFDI 177

Query:   188 TRAKFLHHLEGHFMPVRSLVYSPVDPRVLFSASDDTHVHMYDAEGKSLVTAMSGHASWVL 247
                K LH LEGH MP+RSL +SP D ++L +ASDD ++ +YD +  +L   +SGHASWVL
Sbjct:   178 ATGKLLHTLEGHAMPIRSLTFSP-DSQLLVTASDDGYIKIYDVQHANLAGTLSGHASWVL 236

Query:   248 SVDASPDGAAITTGSSDRTVKLWDLNMRAAMQSMTNHTDQVWGVSFRPLGGRVVSVSDDK 307
             +V   PD     + SSD++VK+WD+  R  + +  +H DQVWGV +   G ++VSV DD+
Sbjct:   237 NVAFCPDDTHFVSSSSDKSVKVWDVGTRTCIHTFFDHQDQVWGVKYNGNGSKIVSVGDDQ 296

Query:   308 SISLYE 313
              I +Y+
Sbjct:   297 EIHVYD 302

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISO

GO:0005737 "cytoplasm" evidence=ISO

GO:0006351 "transcription, DNA-dependent" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0016055 "Wnt receptor signaling pathway" evidence=IEA

GO:0016593 "Cdc73/Paf1 complex" evidence=ISO

GO:0032968 "positive regulation of transcription elongation from RNA polymerase II promoter" evidence=ISO

GO:0035327 "transcriptionally active chromatin" evidence=ISO

GO:0045638 "negative regulation of myeloid cell differentiation" evidence=ISO

GO:0045944 "positive regulation of transcription from RNA polymerase II promoter" evidence=ISO

GO:0051571 "positive regulation of histone H3-K4 methylation" evidence=ISO

GO:0055087 "Ski complex" evidence=ISO

GO:0080182 "histone H3-K4 trimethylation" evidence=ISO

GO:2001162 "positive regulation of histone H3-K79 methylation" evidence=ISO

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q6PBD6	WDR61_XENTR	No assigned EC number	0.3980	0.9428	0.9737	yes	no
Q4V7A0	WDR61_RAT	No assigned EC number	0.3821	0.9428	0.9737	yes	no
Q5ZJH5	WDR61_CHICK	No assigned EC number	0.3853	0.9428	0.9737	yes	no
Q9GZS3	WDR61_HUMAN	No assigned EC number	0.3853	0.9428	0.9737	yes	no
Q9ERF3	WDR61_MOUSE	No assigned EC number	0.3821	0.9428	0.9737	yes	no
Q6P5M2	WDR61_DANRE	No assigned EC number	0.3917	0.9428	0.9737	yes	no
Q32LN7	WDR61_BOVIN	No assigned EC number	0.3853	0.9428	0.9737	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	315
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	3e-63
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	2e-44
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	8e-37
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	6e-36
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	1e-27
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	4e-27
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	3e-18
PLN00181	793	PLN00181, PLN00181, protein SPA1-RELATED; Provisio	2e-08
pfam00400	39	pfam00400, WD40, WD domain, G-beta repeat	8e-07
PLN00181	793	PLN00181, PLN00181, protein SPA1-RELATED; Provisio	4e-06
smart00320	40	smart00320, WD40, WD40 repeats	6e-06
pfam00400	39	pfam00400, WD40, WD domain, G-beta repeat	1e-05
smart00320	40	smart00320, WD40, WD40 repeats	1e-05
pfam08662	194	pfam08662, eIF2A, Eukaryotic translation initiatio	3e-05
PTZ00421	493	PTZ00421, PTZ00421, coronin; Provisional	4e-05
PTZ00421	493	PTZ00421, PTZ00421, coronin; Provisional	7e-05
PLN00181	793	PLN00181, PLN00181, protein SPA1-RELATED; Provisio	5e-04
pfam00400	39	pfam00400, WD40, WD domain, G-beta repeat	0.002
smart00320	40	smart00320, WD40, WD40 repeats	0.002
pfam00400	39	pfam00400, WD40, WD domain, G-beta repeat	0.003
pfam00400	39	pfam00400, WD40, WD domain, G-beta repeat	0.003

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score =  201 bits (513), Expect = 3e-63
 Identities = 100/308 (32%), Positives = 154/308 (50%), Gaps = 19/308 (6%)

Query: 6   LKSVENAHEESVWAVTWVPATETRPALLLTGSLDETVKLWRPDDMQLERTNTGHCLGVVS 65
           L+     H   V  V + P  +    LL TGS D T+K+W  +  +L RT  GH   V  
Sbjct: 1   LRRTLKGHTGGVTCVAFSPDGK----LLATGSGDGTIKVWDLETGELLRTLKGHTGPVRD 56

Query: 66  VAAHPSGIIAASASLDSFVRVFDVDTNASIATLEASPSEVWQMQFDPKGTTLAVAGGGSA 125
           VAA   G   AS S D  +R++D++T   + TL    S V  + F P G  +  +     
Sbjct: 57  VAASADGTYLASGSSDKTIRLWDLETGECVRTLTGHTSYVSSVAFSPDGR-ILSSSSRDK 115

Query: 126 SVKLWDTATWNLIATLSIPRPEGLKPTDKSSSKKFVLSVAWSPDGRRIACGSMDGTISVF 185
           ++K+WD  T   + TL                  +V SVA+SPDG  +A  S DGTI ++
Sbjct: 116 TIKVWDVETGKCLTTLR-------------GHTDWVNSVAFSPDGTFVASSSQDGTIKLW 162

Query: 186 DVTRAKFLHHLEGHFMPVRSLVYSPVDPRVLFSASDDTHVHMYDAEGKSLVTAMSGHASW 245
           D+   K +  L GH   V S+ +SP D   L S+S D  + ++D      +  + GH + 
Sbjct: 163 DLRTGKCVATLTGHTGEVNSVAFSP-DGEKLLSSSSDGTIKLWDLSTGKCLGTLRGHENG 221

Query: 246 VLSVDASPDGAAITTGSSDRTVKLWDLNMRAAMQSMTNHTDQVWGVSFRPLGGRVVSVSD 305
           V SV  SPDG  + +GS D T+++WDL     +Q+++ HT+ V  +++ P G R+ S S 
Sbjct: 222 VNSVAFSPDGYLLASGSEDGTIRVWDLRTGECVQTLSGHTNSVTSLAWSPDGKRLASGSA 281

Query: 306 DKSISLYE 313
           D +I +++
Sbjct: 282 DGTIRIWD 289

Length = 289

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score =  152 bits (386), Expect = 2e-44
 Identities = 78/222 (35%), Positives = 113/222 (50%), Gaps = 15/222 (6%)

Query: 94  SIATLEASPSEVWQMQFDPKGTTLAVAGGGSASVKLWDTATWNLIATLSIPRPEGLKPTD 153
              TL+     V  + F P G  LA  G G  ++K+WD  T  L+ TL            
Sbjct: 1   LRRTLKGHTGGVTCVAFSPDGKLLAT-GSGDGTIKVWDLETGELLRTLKGH--------- 50

Query: 154 KSSSKKFVLSVAWSPDGRRIACGSMDGTISVFDVTRAKFLHHLEGHFMPVRSLVYSPVDP 213
                  V  VA S DG  +A GS D TI ++D+   + +  L GH   V S+ +SP D 
Sbjct: 51  ----TGPVRDVAASADGTYLASGSSDKTIRLWDLETGECVRTLTGHTSYVSSVAFSP-DG 105

Query: 214 RVLFSASDDTHVHMYDAEGKSLVTAMSGHASWVLSVDASPDGAAITTGSSDRTVKLWDLN 273
           R+L S+S D  + ++D E    +T + GH  WV SV  SPDG  + + S D T+KLWDL 
Sbjct: 106 RILSSSSRDKTIKVWDVETGKCLTTLRGHTDWVNSVAFSPDGTFVASSSQDGTIKLWDLR 165

Query: 274 MRAAMQSMTNHTDQVWGVSFRPLGGRVVSVSDDKSISLYEYS 315
               + ++T HT +V  V+F P G +++S S D +I L++ S
Sbjct: 166 TGKCVATLTGHTGEVNSVAFSPDGEKLLSSSSDGTIKLWDLS 207

Length = 289

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score =  136 bits (343), Expect = 8e-37
 Identities = 104/312 (33%), Positives = 161/312 (51%), Gaps = 22/312 (7%)

Query: 6   LKSVENAHEESVWAVTWVPATETRPALLLTGSLDETVKLWRPDDMQLERTNTGHCLGVVS 65
           L      H ESV ++ + P  +    L    SLD T+KLW     +   T  GH   V S
Sbjct: 147 LIRTLEGHSESVTSLAFSPDGKL---LASGSSLDGTIKLWDLRTGKPLSTLAGHTDPVSS 203

Query: 66  VAAHPSG-IIAASASLDSFVRVFDVDTNASIATLEASPSEVWQMQFDPKGTTLAVAGGGS 124
           +A  P G ++ AS S D  +R++D+ T   + +  +  S+     F P G+ LA      
Sbjct: 204 LAFSPDGGLLIASGSSDGTIRLWDLSTGKLLRSTLSGHSDSVVSSFSPDGSLLASGSSDG 263

Query: 125 ASVKLWDTATW-NLIATLSIPRPEGLKPTDKSSSKKFVLSVAWSPDGRRIACGSMDGTIS 183
            +++LWD  +  +L+ TLS                  VLSVA+SPDG+ +A GS DGT+ 
Sbjct: 264 -TIRLWDLRSSSSLLRTLS-------------GHSSSVLSVAFSPDGKLLASGSSDGTVR 309

Query: 184 VFDVTRAKFLHHL--EGHFMPVRSLVYSPVDPRVLFSASDDTHVHMYDAEGKSLVTAMSG 241
           ++D+   K L  L  +GH  PV SL +SP    ++   SDD  + ++D      +  + G
Sbjct: 310 LWDLETGKLLSSLTLKGHEGPVSSLSFSPDGSLLVSGGSDDGTIRLWDLRTGKPLKTLEG 369

Query: 242 HASWVLSVDASPDGAAITTGSSDRTVKLWDLNMRAAMQSMTNHTDQVWGVSFRPLGGRVV 301
           H S VLSV  SPDG  +++GS+D TV+LWDL+  + ++++  HT +V  + F P G  + 
Sbjct: 370 H-SNVLSVSFSPDGRVVSSGSTDGTVRLWDLSTGSLLRNLDGHTSRVTSLDFSPDGKSLA 428

Query: 302 SVSDDKSISLYE 313
           S S D +I L++
Sbjct: 429 SGSSDNTIRLWD 440

Length = 466

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score =  134 bits (337), Expect = 6e-36
 Identities = 104/316 (32%), Positives = 167/316 (52%), Gaps = 22/316 (6%)

Query: 6   LKSVENAHEESVWAVTWVPATETRPALLLTGSLDETVKLWRP-DDMQLERTNTGHCLGVV 64
           +KS+E  H+ SV  +    + +    LL + SLD TVKLW      +L RT  GH   V 
Sbjct: 101 IKSLEGLHDSSVSKLAL-SSPDGNSILLASSSLDGTVKLWDLSTPGKLIRTLEGHSESVT 159

Query: 65  SVAAHPSG-IIAASASLDSFVRVFDVDTNASIATLEASPSEVWQMQFDPKGTTLAVAGGG 123
           S+A  P G ++A+ +SLD  ++++D+ T   ++TL      V  + F P G  L  +G  
Sbjct: 160 SLAFSPDGKLLASGSSLDGTIKLWDLRTGKPLSTLAGHTDPVSSLAFSPDGGLLIASGSS 219

Query: 124 SASVKLWDTATWNLIATLSIPRPEGLKPTDKSSSKKFVLSVAWSPDGRRIACGSMDGTIS 183
             +++LWD +T  L+ +               S     +  ++SPDG  +A GS DGTI 
Sbjct: 220 DGTIRLWDLSTGKLLRS-------------TLSGHSDSVVSSFSPDGSLLASGSSDGTIR 266

Query: 184 VFDV-TRAKFLHHLEGHFMPVRSLVYSPVDPRVLFSASDDTHVHMYDAEGKSLVTAMS-- 240
           ++D+ + +  L  L GH   V S+ +SP D ++L S S D  V ++D E   L+++++  
Sbjct: 267 LWDLRSSSSLLRTLSGHSSSVLSVAFSP-DGKLLASGSSDGTVRLWDLETGKLLSSLTLK 325

Query: 241 GHASWVLSVDASPDGAAI-TTGSSDRTVKLWDLNMRAAMQSMTNHTDQVWGVSFRPLGGR 299
           GH   V S+  SPDG+ + + GS D T++LWDL     ++++  H+  V  VSF P G  
Sbjct: 326 GHEGPVSSLSFSPDGSLLVSGGSDDGTIRLWDLRTGKPLKTLEGHS-NVLSVSFSPDGRV 384

Query: 300 VVSVSDDKSISLYEYS 315
           V S S D ++ L++ S
Sbjct: 385 VSSGSTDGTVRLWDLS 400

Length = 466

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score =  111 bits (277), Expect = 1e-27
 Identities = 92/268 (34%), Positives = 142/268 (52%), Gaps = 19/268 (7%)

Query: 8   SVENAHEESVWAVTWVPATETRPALLLTGSLDETVKLWRPDDMQLERTNTGHCLGVVSVA 67
           S    H + V ++ + P       L+ +GS D T++LW     +L R+        V  +
Sbjct: 192 STLAGHTDPVSSLAFSP---DGGLLIASGSSDGTIRLWDLSTGKLLRSTLSGHSDSVVSS 248

Query: 68  AHPSGIIAASASLDSFVRVFDVDTNAS-IATLEASPSEVWQMQFDPKGTTLAVAGGGSAS 126
             P G + AS S D  +R++D+ +++S + TL    S V  + F P G  LA +G    +
Sbjct: 249 FSPDGSLLASGSSDGTIRLWDLRSSSSLLRTLSGHSSSVLSVAFSPDGKLLA-SGSSDGT 307

Query: 127 VKLWDTATWNLIATLSIPRPEGLKPTDKSSSKKFVLSVAWSPDGRRIACG-SMDGTISVF 185
           V+LWD  T  L+++L++              +  V S+++SPDG  +  G S DGTI ++
Sbjct: 308 VRLWDLETGKLLSSLTL-----------KGHEGPVSSLSFSPDGSLLVSGGSDDGTIRLW 356

Query: 186 DVTRAKFLHHLEGHFMPVRSLVYSPVDPRVLFSASDDTHVHMYDAEGKSLVTAMSGHASW 245
           D+   K L  LEGH   V S+ +SP D RV+ S S D  V ++D    SL+  + GH S 
Sbjct: 357 DLRTGKPLKTLEGH-SNVLSVSFSP-DGRVVSSGSTDGTVRLWDLSTGSLLRNLDGHTSR 414

Query: 246 VLSVDASPDGAAITTGSSDRTVKLWDLN 273
           V S+D SPDG ++ +GSSD T++LWDL 
Sbjct: 415 VTSLDFSPDGKSLASGSSDNTIRLWDLK 442

Length = 466

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score =  110 bits (274), Expect = 4e-27
 Identities = 97/289 (33%), Positives = 151/289 (52%), Gaps = 26/289 (8%)

Query: 32  LLLTGSLDETVKLWRPDDMQLERTNTGHCLGVVSVAAHPSGIIAASASLDSFVRVFDVDT 91
           LLL    D  V L     + L     GH   + S+A  P G +  S S D  ++++D+D 
Sbjct: 41  LLLALLSDSLVSLPDLSSLLL----RGHEDSITSIAFSPDGELLLSGSSDGTIKLWDLDN 96

Query: 92  N-ASIATLEASP-SEVWQMQF-DPKGTTLAVAGGGS-ASVKLWDTAT-WNLIATLSIPRP 146
               I +LE    S V ++    P G ++ +A      +VKLWD +T   LI TL     
Sbjct: 97  GEKLIKSLEGLHDSSVSKLALSSPDGNSILLASSSLDGTVKLWDLSTPGKLIRTLEGH-- 154

Query: 147 EGLKPTDKSSSKKFVLSVAWSPDGRRIACGS-MDGTISVFDVTRAKFLHHLEGHFMPVRS 205
                       + V S+A+SPDG+ +A GS +DGTI ++D+   K L  L GH  PV S
Sbjct: 155 -----------SESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTGKPLSTLAGHTDPVSS 203

Query: 206 LVYSPVDPRVLFSASDDTHVHMYDAE-GKSLVTAMSGHASWVLSVDASPDGAAITTGSSD 264
           L +SP    ++ S S D  + ++D   GK L + +SGH+  V+S   SPDG+ + +GSSD
Sbjct: 204 LAFSPDGGLLIASGSSDGTIRLWDLSTGKLLRSTLSGHSDSVVSS-FSPDGSLLASGSSD 262

Query: 265 RTVKLWDL-NMRAAMQSMTNHTDQVWGVSFRPLGGRVVSVSDDKSISLY 312
            T++LWDL +  + +++++ H+  V  V+F P G  + S S D ++ L+
Sbjct: 263 GTIRLWDLRSSSSLLRTLSGHSSSVLSVAFSPDGKLLASGSSDGTVRLW 311

Length = 466

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score = 84.4 bits (207), Expect = 3e-18
 Identities = 75/253 (29%), Positives = 118/253 (46%), Gaps = 23/253 (9%)

Query: 69  HPSGIIAASASLDSFVRVFDVDTNASIATLEASPSEVWQMQFDPKGTTLAVAGGGSASVK 128
             SGI+  +   DS V + D+ +      L      +  + F P G  L  +G    ++K
Sbjct: 36  SESGILLLALLSDSLVSLPDLSSL----LLRGHEDSITSIAFSPDGELLL-SGSSDGTIK 90

Query: 129 LWDTATWNLIATLSIPRPEGLKPTDKSSSKKFVLSVAW-SPDGRRIA--CGSMDGTISVF 185
           LWD           +   E L  + +      V  +A  SPDG  I     S+DGT+ ++
Sbjct: 91  LWD-----------LDNGEKLIKSLEGLHDSSVSKLALSSPDGNSILLASSSLDGTVKLW 139

Query: 186 DV-TRAKFLHHLEGHFMPVRSLVYSPVDPRVLFSASDDTHVHMYDAEGKSLVTAMSGHAS 244
           D+ T  K +  LEGH   V SL +SP    +   +S D  + ++D      ++ ++GH  
Sbjct: 140 DLSTPGKLIRTLEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTGKPLSTLAGHTD 199

Query: 245 WVLSVDASPDG-AAITTGSSDRTVKLWDL-NMRAAMQSMTNHTDQVWGVSFRPLGGRVVS 302
            V S+  SPDG   I +GSSD T++LWDL   +    +++ H+D V   SF P G  + S
Sbjct: 200 PVSSLAFSPDGGLLIASGSSDGTIRLWDLSTGKLLRSTLSGHSDSVVS-SFSPDGSLLAS 258

Query: 303 VSDDKSISLYEYS 315
            S D +I L++  
Sbjct: 259 GSSDGTIRLWDLR 271

Length = 466

>gnl|CDD|177776 PLN00181, PLN00181, protein SPA1-RELATED; Provisional

 Score = 55.5 bits (133), Expect = 2e-08
 Identities = 44/167 (26%), Positives = 80/167 (47%), Gaps = 3/167 (1%)

Query: 151 PTDKSSSKKFVLSVAW-SPDGRRIACGSMDGTISVFDVTRAKFLHHLEGHFMPVRSLVYS 209
           P  + +S+  +  + W S    ++A  + +G + V+DV R++ +  ++ H   V S+ YS
Sbjct: 525 PVVELASRSKLSGICWNSYIKSQVASSNFEGVVQVWDVARSQLVTEMKEHEKRVWSIDYS 584

Query: 210 PVDPRVLFSASDDTHVHMYDAEGKSLVTAMSGHASWVLSVDASPDGAAITTGSSDRTVKL 269
             DP +L S SDD  V ++       +  +   A+       S  G ++  GS+D  V  
Sbjct: 585 SADPTLLASGSDDGSVKLWSINQGVSIGTIKTKANICCVQFPSESGRSLAFGSADHKVYY 644

Query: 270 WDL-NMRAAMQSMTNHTDQVWGVSFRPLGGRVVSVSDDKSISLYEYS 315
           +DL N +  + +M  H+  V  V F      +VS S D ++ L++ S
Sbjct: 645 YDLRNPKLPLCTMIGHSKTVSYVRFVD-SSTLVSSSTDNTLKLWDLS 690

Length = 793

>gnl|CDD|201208 pfam00400, WD40, WD domain, G-beta repeat

 Score = 44.7 bits (106), Expect = 8e-07
 Identities = 17/39 (43%), Positives = 23/39 (58%)

Query: 233 KSLVTAMSGHASWVLSVDASPDGAAITTGSSDRTVKLWD 271
             L+  + GH   V SV  SPDG  + +GS D TV++WD
Sbjct: 1   GKLLRTLKGHTGPVTSVAFSPDGNLLASGSDDGTVRVWD 39

Length = 39

>gnl|CDD|177776 PLN00181, PLN00181, protein SPA1-RELATED; Provisional

 Score = 48.2 bits (114), Expect = 4e-06
 Identities = 51/225 (22%), Positives = 88/225 (39%), Gaps = 25/225 (11%)

Query: 76  ASASLDSFVRVFDVDTNASIATLEASPSEVWQMQFDPKGTTLAVAGGGSASVKLWDTATW 135
           AS++ +  V+V+DV  +  +  ++     VW + +     TL  +G    SVKLW     
Sbjct: 549 ASSNFEGVVQVWDVARSQLVTEMKEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQG 608

Query: 136 NLIATLSIPRPEGLKPTDKSSSKKFVLSVAWSPD-GRRIACGSMDGTISVFDVTRAKF-L 193
             I T+               +K  +  V +  + GR +A GS D  +  +D+   K  L
Sbjct: 609 VSIGTI--------------KTKANICCVQFPSESGRSLAFGSADHKVYYYDLRNPKLPL 654

Query: 194 HHLEGHFMPVRSLVYSPVDPRVLFSASDDTHVHMYDAE------GKSLVTAMSGHASWVL 247
             + GH   V  + +  VD   L S+S D  + ++D         ++ + +  GH +   
Sbjct: 655 CTMIGHSKTVSYVRF--VDSSTLVSSSTDNTLKLWDLSMSISGINETPLHSFMGHTNVKN 712

Query: 248 SVDASPDGAAITTGSSDRTVKLWDLNM-RAAMQSMTNHTDQVWGV 291
            V  S     I TGS    V ++        +       D V G+
Sbjct: 713 FVGLSVSDGYIATGSETNEVFVYHKAFPMPVLSYKFKTIDPVSGL 757

Length = 793

>gnl|CDD|197651 smart00320, WD40, WD40 repeats

 Score = 42.3 bits (100), Expect = 6e-06
 Identities = 18/39 (46%), Positives = 23/39 (58%)

Query: 233 KSLVTAMSGHASWVLSVDASPDGAAITTGSSDRTVKLWD 271
             L+  + GH   V SV  SPDG  + +GS D T+KLWD
Sbjct: 2   GELLKTLKGHTGPVTSVAFSPDGKYLASGSDDGTIKLWD 40

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. Length = 40

>gnl|CDD|201208 pfam00400, WD40, WD domain, G-beta repeat

 Score = 41.2 bits (97), Expect = 1e-05
 Identities = 16/29 (55%), Positives = 20/29 (68%)

Query: 158 KKFVLSVAWSPDGRRIACGSMDGTISVFD 186
              V SVA+SPDG  +A GS DGT+ V+D
Sbjct: 11  TGPVTSVAFSPDGNLLASGSDDGTVRVWD 39

Length = 39

>gnl|CDD|197651 smart00320, WD40, WD40 repeats

 Score = 41.1 bits (97), Expect = 1e-05
 Identities = 16/29 (55%), Positives = 21/29 (72%)

Query: 158 KKFVLSVAWSPDGRRIACGSMDGTISVFD 186
              V SVA+SPDG+ +A GS DGTI ++D
Sbjct: 12  TGPVTSVAFSPDGKYLASGSDDGTIKLWD 40

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. Length = 40

>gnl|CDD|149648 pfam08662, eIF2A, Eukaryotic translation initiation factor eIF2A

 Score = 43.8 bits (104), Expect = 3e-05
 Identities = 30/117 (25%), Positives = 50/117 (42%), Gaps = 15/117 (12%)

Query: 164 VAWSPDGRRIAC--GSMDGTISVFDVTRAKFLHHLEGHFMPVRSLVYSPVDPRVLFSASD 221
            AWSP+G+  A   G M   I+ FD+ +   +H L     P  ++ +SP    VL +   
Sbjct: 65  FAWSPNGKEFAVIYGYMPAKITFFDL-KGNVIHSLGEQ--PRNTIFWSPFGRLVLLAGFG 121

Query: 222 DTH--VHMYDAEGKSLVTAMSGHASWVLSVDASPDGAAITTGSS------DRTVKLW 270
           +    +  +D + K  +   +  AS     + SPDG    T ++      D   K+W
Sbjct: 122 NLAGQIEFWDVKNKKKIA--TAEASNATDCEWSPDGRYFLTATTSPRLRVDNGFKIW 176

This is a family of eukaryotic translation initiation factors. Length = 194

>gnl|CDD|173611 PTZ00421, PTZ00421, coronin; Provisional

 Score = 44.5 bits (105), Expect = 4e-05
 Identities = 28/116 (24%), Positives = 54/116 (46%), Gaps = 8/116 (6%)

Query: 202 PVRSLVYSPVDPRVLFSASDDTHVHMYD--AEG-----KSLVTAMSGHASWVLSVDASPD 254
           P+  + ++P DP+ LF+AS+D  +  +    EG        +  + GH   V  V   P 
Sbjct: 77  PIIDVAFNPFDPQKLFTASEDGTIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPS 136

Query: 255 GAAI-TTGSSDRTVKLWDLNMRAAMQSMTNHTDQVWGVSFRPLGGRVVSVSDDKSI 309
              +  +  +D  V +WD+    A++ +  H+DQ+  + +   G  + + S DK +
Sbjct: 137 AMNVLASAGADMVVNVWDVERGKAVEVIKCHSDQITSLEWNLDGSLLCTTSKDKKL 192

Length = 493

>gnl|CDD|173611 PTZ00421, PTZ00421, coronin; Provisional

 Score = 44.1 bits (104), Expect = 7e-05
 Identities = 32/119 (26%), Positives = 59/119 (49%), Gaps = 8/119 (6%)

Query: 161 VLSVAWSP-DGRRIACGSMDGTISVFDVTRAKF-------LHHLEGHFMPVRSLVYSPVD 212
           ++ VA++P D +++   S DGTI  + +            + HL+GH   V  + + P  
Sbjct: 78  IIDVAFNPFDPQKLFTASEDGTIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSA 137

Query: 213 PRVLFSASDDTHVHMYDAEGKSLVTAMSGHASWVLSVDASPDGAAITTGSSDRTVKLWD 271
             VL SA  D  V+++D E    V  +  H+  + S++ + DG+ + T S D+ + + D
Sbjct: 138 MNVLASAGADMVVNVWDVERGKAVEVIKCHSDQITSLEWNLDGSLLCTTSKDKKLNIID 196

Length = 493

>gnl|CDD|177776 PLN00181, PLN00181, protein SPA1-RELATED; Provisional

 Score = 41.6 bits (97), Expect = 5e-04
 Identities = 40/175 (22%), Positives = 78/175 (44%), Gaps = 12/175 (6%)

Query: 149 LKPTDKSSSKKFVLSVAWSPDGRRIACGSMDGTISVFD----VTRAKFLHH----LEGHF 200
           LK  D  +S   V ++ +  DG   A   ++  I +F+    +   + +H+    L    
Sbjct: 474 LKQGDLLNSSNLVCAIGFDRDGEFFATAGVNKKIKIFECESIIKDGRDIHYPVVELASR- 532

Query: 201 MPVRSLVYSPVDPRVLFSASDDTHVHMYDAEGKSLVTAMSGHASWVLSVD-ASPDGAAIT 259
             +  + ++      + S++ +  V ++D     LVT M  H   V S+D +S D   + 
Sbjct: 533 SKLSGICWNSYIKSQVASSNFEGVVQVWDVARSQLVTEMKEHEKRVWSIDYSSADPTLLA 592

Query: 260 TGSSDRTVKLWDLNMRAAMQSMTNHTDQVWGVSFRPLGGRVVSV-SDDKSISLYE 313
           +GS D +VKLW +N   ++ ++    + +  V F    GR ++  S D  +  Y+
Sbjct: 593 SGSDDGSVKLWSINQGVSIGTIKTKAN-ICCVQFPSESGRSLAFGSADHKVYYYD 646

Length = 793

>gnl|CDD|201208 pfam00400, WD40, WD domain, G-beta repeat

 Score = 35.0 bits (81), Expect = 0.002
 Identities = 18/39 (46%), Positives = 24/39 (61%), Gaps = 1/39 (2%)

Query: 191 KFLHHLEGHFMPVRSLVYSPVDPRVLFSASDDTHVHMYD 229
           K L  L+GH  PV S+ +SP D  +L S SDD  V ++D
Sbjct: 2   KLLRTLKGHTGPVTSVAFSP-DGNLLASGSDDGTVRVWD 39

Length = 39

>gnl|CDD|197651 smart00320, WD40, WD40 repeats

 Score = 35.0 bits (81), Expect = 0.002
 Identities = 13/35 (37%), Positives = 21/35 (60%)

Query: 279 QSMTNHTDQVWGVSFRPLGGRVVSVSDDKSISLYE 313
           +++  HT  V  V+F P G  + S SDD +I L++
Sbjct: 6   KTLKGHTGPVTSVAFSPDGKYLASGSDDGTIKLWD 40

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. Length = 40

>gnl|CDD|201208 pfam00400, WD40, WD domain, G-beta repeat

 Score = 34.6 bits (80), Expect = 0.003
 Identities = 11/35 (31%), Positives = 21/35 (60%)

Query: 278 MQSMTNHTDQVWGVSFRPLGGRVVSVSDDKSISLY 312
           ++++  HT  V  V+F P G  + S SDD ++ ++
Sbjct: 4   LRTLKGHTGPVTSVAFSPDGNLLASGSDDGTVRVW 38

Length = 39

>gnl|CDD|201208 pfam00400, WD40, WD domain, G-beta repeat

 Score = 34.6 bits (80), Expect = 0.003
 Identities = 19/39 (48%), Positives = 22/39 (56%)

Query: 50 MQLERTNTGHCLGVVSVAAHPSGIIAASASLDSFVRVFD 88
           +L RT  GH   V SVA  P G + AS S D  VRV+D
Sbjct: 1  GKLLRTLKGHTGPVTSVAFSPDGNLLASGSDDGTVRVWD 39

Length = 39

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	315
KOG0272	459	consensus U4/U6 small nuclear ribonucleoprotein Pr	100.0
KOG0271	480	consensus Notchless-like WD40 repeat-containing pr	100.0
KOG0271	480	consensus Notchless-like WD40 repeat-containing pr	100.0
KOG0286	343	consensus G-protein beta subunit [General function	100.0
KOG0279	315	consensus G protein beta subunit-like protein [Sig	100.0
KOG0272	459	consensus U4/U6 small nuclear ribonucleoprotein Pr	100.0
KOG0265	338	consensus U5 snRNP-specific protein-like factor an	100.0
KOG0295	406	consensus WD40 repeat-containing protein [Function	100.0
KOG0315	311	consensus G-protein beta subunit-like protein (con	100.0
KOG0284	464	consensus Polyadenylation factor I complex, subuni	100.0
KOG0273	524	consensus Beta-transducin family (WD-40 repeat) pr	100.0
KOG0266	456	consensus WD40 repeat-containing protein [General	100.0
cd00200	289	WD40 WD40 domain, found in a number of eukaryotic	100.0
KOG0273	524	consensus Beta-transducin family (WD-40 repeat) pr	100.0
KOG0285	460	consensus Pleiotropic regulator 1 [RNA processing	100.0
KOG0282	503	consensus mRNA splicing factor [Function unknown]	100.0
KOG0319	775	consensus WD40-repeat-containing subunit of the 18	100.0
KOG0318	603	consensus WD40 repeat stress protein/actin interac	100.0
KOG0263	707	consensus Transcription initiation factor TFIID, s	100.0
KOG0279	315	consensus G protein beta subunit-like protein [Sig	100.0
KOG0296	399	consensus Angio-associated migratory cell protein	100.0
KOG0286	343	consensus G-protein beta subunit [General function	100.0
KOG0645	312	consensus WD40 repeat protein [General function pr	100.0
KOG0293	519	consensus WD40 repeat-containing protein [Function	100.0
PLN00181	793	protein SPA1-RELATED; Provisional	100.0
KOG0276	794	consensus Vesicle coat complex COPI, beta' subunit	100.0
KOG0291	893	consensus WD40-repeat-containing subunit of the 18	100.0
KOG0281	499	consensus Beta-TrCP (transducin repeats containing	100.0
KOG0284	464	consensus Polyadenylation factor I complex, subuni	100.0
KOG0263	707	consensus Transcription initiation factor TFIID, s	100.0
KOG0316	307	consensus Conserved WD40 repeat-containing protein	100.0
KOG0292	1202	consensus Vesicle coat complex COPI, alpha subunit	100.0
KOG0319	775	consensus WD40-repeat-containing subunit of the 18	100.0
KOG0313	423	consensus Microtubule binding protein YTM1 (contai	100.0
KOG0306	888	consensus WD40-repeat-containing subunit of the 18	100.0
KOG0643	327	consensus Translation initiation factor 3, subunit	100.0
KOG0291	893	consensus WD40-repeat-containing subunit of the 18	100.0
KOG0285	460	consensus Pleiotropic regulator 1 [RNA processing	100.0
KOG0315	311	consensus G-protein beta subunit-like protein (con	100.0
KOG0295	406	consensus WD40 repeat-containing protein [Function	100.0
KOG0278	334	consensus Serine/threonine kinase receptor-associa	100.0
KOG0277	311	consensus Peroxisomal targeting signal type 2 rece	100.0
KOG0288	459	consensus WD40 repeat protein TipD [General functi	100.0
KOG0275	508	consensus Conserved WD40 repeat-containing protein	100.0
KOG0268	433	consensus Sof1-like rRNA processing protein (conta	100.0
KOG0281	499	consensus Beta-TrCP (transducin repeats containing	100.0
KOG0318	603	consensus WD40 repeat stress protein/actin interac	100.0
KOG0277	311	consensus Peroxisomal targeting signal type 2 rece	100.0
KOG0276	794	consensus Vesicle coat complex COPI, beta' subunit	100.0
KOG0266	456	consensus WD40 repeat-containing protein [General	100.0
KOG0316	307	consensus Conserved WD40 repeat-containing protein	100.0
KOG1407	313	consensus WD40 repeat protein [Function unknown]	100.0
KOG0305	484	consensus Anaphase promoting complex, Cdc20, Cdh1,	100.0
KOG0274	537	consensus Cdc4 and related F-box and WD-40 protein	100.0
PLN00181	793	protein SPA1-RELATED; Provisional	100.0
cd00200	289	WD40 WD40 domain, found in a number of eukaryotic	100.0
KOG0647	347	consensus mRNA export protein (contains WD40 repea	100.0
KOG1446	311	consensus Histone H3 (Lys4) methyltransferase comp	100.0
KOG0313	423	consensus Microtubule binding protein YTM1 (contai	100.0
KOG0289	506	consensus mRNA splicing factor [General function p	100.0
KOG0310	487	consensus Conserved WD40 repeat-containing protein	100.0
KOG0772	641	consensus Uncharacterized conserved protein, conta	100.0
KOG0265	338	consensus U5 snRNP-specific protein-like factor an	100.0
KOG0292	1202	consensus Vesicle coat complex COPI, alpha subunit	100.0
KOG0282	503	consensus mRNA splicing factor [Function unknown]	100.0
PTZ00420	568	coronin; Provisional	100.0
KOG0645	312	consensus WD40 repeat protein [General function pr	100.0
KOG0283	712	consensus WD40 repeat-containing protein [Function	100.0
PTZ00421	493	coronin; Provisional	100.0
KOG0296	399	consensus Angio-associated migratory cell protein	100.0
KOG1036	323	consensus Mitotic spindle checkpoint protein BUB3,	100.0
KOG0640	430	consensus mRNA cleavage stimulating factor complex	100.0
KOG0283	712	consensus WD40 repeat-containing protein [Function	100.0
KOG0293	519	consensus WD40 repeat-containing protein [Function	100.0
KOG0301	745	consensus Phospholipase A2-activating protein (con	100.0
KOG1407	313	consensus WD40 repeat protein [Function unknown]	100.0
KOG0274	537	consensus Cdc4 and related F-box and WD-40 protein	100.0
KOG0308	735	consensus Conserved WD40 repeat-containing protein	100.0
KOG0973	942	consensus Histone transcription regulator HIRA, WD	100.0
KOG0306	888	consensus WD40-repeat-containing subunit of the 18	100.0
KOG0300	481	consensus WD40 repeat-containing protein [Function	100.0
KOG0641	350	consensus WD40 repeat protein [General function pr	100.0
KOG0294	362	consensus WD40 repeat-containing protein [Function	99.98
KOG0299	479	consensus U3 snoRNP-associated protein (contains W	99.98
PTZ00421	493	coronin; Provisional	99.98
KOG0310	487	consensus Conserved WD40 repeat-containing protein	99.98
KOG0264	422	consensus Nucleosome remodeling factor, subunit CA	99.97
TIGR03866	300	PQQ_ABC_repeats PQQ-dependent catabolism-associate	99.97
KOG0643	327	consensus Translation initiation factor 3, subunit	99.97
KOG0278	334	consensus Serine/threonine kinase receptor-associa	99.97
KOG0264	422	consensus Nucleosome remodeling factor, subunit CA	99.97
PTZ00420	568	coronin; Provisional	99.97
KOG1408	1080	consensus WD40 repeat protein [Function unknown]	99.97
KOG0973	942	consensus Histone transcription regulator HIRA, WD	99.97
KOG0294	362	consensus WD40 repeat-containing protein [Function	99.97
KOG0268	433	consensus Sof1-like rRNA processing protein (conta	99.97
KOG0308	735	consensus Conserved WD40 repeat-containing protein	99.97
KOG0640	430	consensus mRNA cleavage stimulating factor complex	99.97
KOG0641	350	consensus WD40 repeat protein [General function pr	99.97
KOG0288	459	consensus WD40 repeat protein TipD [General functi	99.97
KOG0305	484	consensus Anaphase promoting complex, Cdc20, Cdh1,	99.97
KOG0289	506	consensus mRNA splicing factor [General function p	99.97
KOG0275	508	consensus Conserved WD40 repeat-containing protein	99.96
KOG1273	405	consensus WD40 repeat protein [General function pr	99.96
KOG1332	299	consensus Vesicle coat complex COPII, subunit SEC1	99.96
KOG0300	481	consensus WD40 repeat-containing protein [Function	99.96
KOG1446	311	consensus Histone H3 (Lys4) methyltransferase comp	99.96
KOG2096	420	consensus WD40 repeat protein [General function pr	99.96
KOG0646	476	consensus WD40 repeat protein [General function pr	99.96
KOG1408	1080	consensus WD40 repeat protein [Function unknown]	99.96
KOG1539	910	consensus WD repeat protein [General function pred	99.96
KOG0269	839	consensus WD40 repeat-containing protein [Function	99.96
KOG1332	299	consensus Vesicle coat complex COPII, subunit SEC1	99.96
KOG1063	764	consensus RNA polymerase II elongator complex, sub	99.96
KOG2445	361	consensus Nuclear pore complex component (sc Seh1)	99.96
KOG0321	720	consensus WD40 repeat-containing protein L2DTL [Fu	99.96
KOG0267	825	consensus Microtubule severing protein katanin p80	99.96
KOG2055	514	consensus WD40 repeat protein [General function pr	99.96
KOG0772	641	consensus Uncharacterized conserved protein, conta	99.96
KOG2048	691	consensus WD40 repeat protein [General function pr	99.96
KOG2445	361	consensus Nuclear pore complex component (sc Seh1)	99.96
KOG4283	397	consensus Transcription-coupled repair protein CSA	99.96
KOG0267	825	consensus Microtubule severing protein katanin p80	99.96
KOG0639	705	consensus Transducin-like enhancer of split protei	99.95
KOG1539	910	consensus WD repeat protein [General function pred	99.95
KOG0301	745	consensus Phospholipase A2-activating protein (con	99.95
TIGR03866	300	PQQ_ABC_repeats PQQ-dependent catabolism-associate	99.95
KOG0299	479	consensus U3 snoRNP-associated protein (contains W	99.95
KOG0270	463	consensus WD40 repeat-containing protein [Function	99.95
KOG2106	626	consensus Uncharacterized conserved protein, conta	99.95
KOG1274	933	consensus WD40 repeat protein [General function pr	99.95
KOG1063	764	consensus RNA polymerase II elongator complex, sub	99.95
KOG4328	498	consensus WD40 protein [Function unknown]	99.95
KOG2106	626	consensus Uncharacterized conserved protein, conta	99.95
KOG1036	323	consensus Mitotic spindle checkpoint protein BUB3,	99.95
KOG1034	385	consensus Transcriptional repressor EED/ESC/FIE, r	99.95
KOG1274	933	consensus WD40 repeat protein [General function pr	99.95
KOG0646	476	consensus WD40 repeat protein [General function pr	99.95
KOG0647	347	consensus mRNA export protein (contains WD40 repea	99.94
KOG2096	420	consensus WD40 repeat protein [General function pr	99.94
KOG0307	1049	consensus Vesicle coat complex COPII, subunit SEC3	99.94
KOG0269	839	consensus WD40 repeat-containing protein [Function	99.94
KOG0307	1049	consensus Vesicle coat complex COPII, subunit SEC3	99.94
KOG0322	323	consensus G-protein beta subunit-like protein GNB1	99.94
KOG0650	733	consensus WD40 repeat nucleolar protein Bop1, invo	99.94
KOG0302	440	consensus Ribosome Assembly protein [General funct	99.93
KOG0650	733	consensus WD40 repeat nucleolar protein Bop1, invo	99.93
KOG0302	440	consensus Ribosome Assembly protein [General funct	99.93
KOG4283	397	consensus Transcription-coupled repair protein CSA	99.93
KOG2919	406	consensus Guanine nucleotide-binding protein [Gene	99.93
KOG4378	673	consensus Nuclear protein COP1 [Signal transductio	99.93
KOG1034	385	consensus Transcriptional repressor EED/ESC/FIE, r	99.93
KOG4328	498	consensus WD40 protein [Function unknown]	99.93
KOG4378	673	consensus Nuclear protein COP1 [Signal transductio	99.93
KOG1445	1012	consensus Tumor-specific antigen (contains WD repe	99.93
KOG1007	370	consensus WD repeat protein TSSC1, WD repeat super	99.92
KOG0321	720	consensus WD40 repeat-containing protein L2DTL [Fu	99.92
KOG0270	463	consensus WD40 repeat-containing protein [Function	99.92
KOG0644	1113	consensus Uncharacterized conserved protein, conta	99.92
KOG0639	705	consensus Transducin-like enhancer of split protei	99.91
COG2319	466	FOG: WD40 repeat [General function prediction only	99.91
KOG1538	1081	consensus Uncharacterized conserved protein WDR10,	99.91
KOG2048	691	consensus WD40 repeat protein [General function pr	99.91
KOG2055	514	consensus WD40 repeat protein [General function pr	99.9
KOG2919	406	consensus Guanine nucleotide-binding protein [Gene	99.89
KOG1587	555	consensus Cytoplasmic dynein intermediate chain [C	99.89
KOG1009	434	consensus Chromatin assembly complex 1 subunit B/C	99.89
PRK11028	330	6-phosphogluconolactonase; Provisional	99.89
KOG0642	577	consensus Cell-cycle nuclear protein, contains WD-	99.88
COG2319	466	FOG: WD40 repeat [General function prediction only	99.88
KOG1188	376	consensus WD40 repeat protein [General function pr	99.88
KOG1273	405	consensus WD40 repeat protein [General function pr	99.88
KOG0642	577	consensus Cell-cycle nuclear protein, contains WD-	99.87
KOG1963	792	consensus WD40 repeat protein [General function pr	99.86
KOG1007	370	consensus WD repeat protein TSSC1, WD repeat super	99.86
KOG1445	1012	consensus Tumor-specific antigen (contains WD repe	99.86
KOG0290	364	consensus Conserved WD40 repeat-containing protein	99.86
KOG1517	1387	consensus Guanine nucleotide binding protein MIP1	99.86
KOG0290	364	consensus Conserved WD40 repeat-containing protein	99.86
KOG1009	434	consensus Chromatin assembly complex 1 subunit B/C	99.85
KOG2110	391	consensus Uncharacterized conserved protein, conta	99.85
KOG0303	472	consensus Actin-binding protein Coronin, contains	99.85
KOG0649	325	consensus WD40 repeat protein [General function pr	99.85
KOG1334	559	consensus WD40 repeat protein [General function pr	99.84
KOG1524	737	consensus WD40 repeat-containing protein CHE-2 [Ge	99.84
KOG4227	609	consensus WD40 repeat protein [General function pr	99.84
PRK01742	429	tolB translocation protein TolB; Provisional	99.83
KOG1524	737	consensus WD40 repeat-containing protein CHE-2 [Ge	99.83
KOG1538	1081	consensus Uncharacterized conserved protein WDR10,	99.83
KOG0303	472	consensus Actin-binding protein Coronin, contains	99.82
KOG2110	391	consensus Uncharacterized conserved protein, conta	99.82
KOG0649	325	consensus WD40 repeat protein [General function pr	99.81
KOG1517	1387	consensus Guanine nucleotide binding protein MIP1	99.81
KOG1188	376	consensus WD40 repeat protein [General function pr	99.81
KOG1587	555	consensus Cytoplasmic dynein intermediate chain [C	99.81
KOG1240	1431	consensus Protein kinase containing WD40 repeats [	99.81
PRK11028	330	6-phosphogluconolactonase; Provisional	99.8
KOG1310	758	consensus WD40 repeat protein [General function pr	99.79
KOG0771	398	consensus Prolactin regulatory element-binding pro	99.79
PRK01742	429	tolB translocation protein TolB; Provisional	99.79
KOG2111	346	consensus Uncharacterized conserved protein, conta	99.79
PF02239	369	Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO	99.79
KOG0771	398	consensus Prolactin regulatory element-binding pro	99.78
KOG4227	609	consensus WD40 repeat protein [General function pr	99.77
KOG1963	792	consensus WD40 repeat protein [General function pr	99.77
KOG3881	412	consensus Uncharacterized conserved protein [Funct	99.76
KOG1334	559	consensus WD40 repeat protein [General function pr	99.75
KOG1272	545	consensus WD40-repeat-containing subunit of the 18	99.74
PRK03629	429	tolB translocation protein TolB; Provisional	99.74
PF10282	345	Lactonase: Lactonase, 7-bladed beta-propeller; Int	99.73
KOG1240	1431	consensus Protein kinase containing WD40 repeats [	99.73
KOG2139	445	consensus WD40 repeat protein [General function pr	99.72
KOG1310	758	consensus WD40 repeat protein [General function pr	99.71
KOG0322	323	consensus G-protein beta subunit-like protein GNB1	99.71
KOG2111	346	consensus Uncharacterized conserved protein, conta	99.71
KOG1523	361	consensus Actin-related protein Arp2/3 complex, su	99.71
KOG1272	545	consensus WD40-repeat-containing subunit of the 18	99.7
PRK04922	433	tolB translocation protein TolB; Provisional	99.7
KOG0644	1113	consensus Uncharacterized conserved protein, conta	99.7
PF08662	194	eIF2A: Eukaryotic translation initiation factor eI	99.69
PRK05137	435	tolB translocation protein TolB; Provisional	99.68
PRK02889	427	tolB translocation protein TolB; Provisional	99.68
KOG2321	703	consensus WD40 repeat protein [General function pr	99.67
KOG2394	636	consensus WD40 protein DMR-N9 [General function pr	99.67
KOG4497	447	consensus Uncharacterized conserved protein WDR8,	99.67
PRK05137	435	tolB translocation protein TolB; Provisional	99.67
KOG0974	967	consensus WD-repeat protein WDR6, WD repeat superf	99.67
PRK03629	429	tolB translocation protein TolB; Provisional	99.67
PRK04922	433	tolB translocation protein TolB; Provisional	99.66
KOG1523	361	consensus Actin-related protein Arp2/3 complex, su	99.66
KOG3881	412	consensus Uncharacterized conserved protein [Funct	99.65
KOG2394	636	consensus WD40 protein DMR-N9 [General function pr	99.65
PRK02889	427	tolB translocation protein TolB; Provisional	99.65
PF08662	194	eIF2A: Eukaryotic translation initiation factor eI	99.64
KOG2139	445	consensus WD40 repeat protein [General function pr	99.63
KOG4497	447	consensus Uncharacterized conserved protein WDR8,	99.61
PF10282	345	Lactonase: Lactonase, 7-bladed beta-propeller; Int	99.6
KOG1409	404	consensus Uncharacterized conserved protein, conta	99.6
PF02239	369	Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO	99.6
KOG1354	433	consensus Serine/threonine protein phosphatase 2A,	99.59
PRK00178	430	tolB translocation protein TolB; Provisional	99.56
PRK04792	448	tolB translocation protein TolB; Provisional	99.56
KOG4190	1034	consensus Uncharacterized conserved protein [Funct	99.56
TIGR02658	352	TTQ_MADH_Hv methylamine dehydrogenase heavy chain.	99.55
TIGR02800	417	propeller_TolB tol-pal system beta propeller repea	99.55
TIGR02800	417	propeller_TolB tol-pal system beta propeller repea	99.55
KOG0280	339	consensus Uncharacterized conserved protein [Amino	99.52
PRK00178	430	tolB translocation protein TolB; Provisional	99.51
KOG4547	541	consensus WD40 repeat-containing protein [General	99.49
PLN02919	1057	haloacid dehalogenase-like hydrolase family protei	99.48
KOG2321	703	consensus WD40 repeat protein [General function pr	99.48
KOG2315	566	consensus Predicted translation initiation factor	99.47
PRK04792	448	tolB translocation protein TolB; Provisional	99.46
KOG0280	339	consensus Uncharacterized conserved protein [Amino	99.45
KOG1354	433	consensus Serine/threonine protein phosphatase 2A,	99.45
COG2706	346	3-carboxymuconate cyclase [Carbohydrate transport	99.43
PLN02919	1057	haloacid dehalogenase-like hydrolase family protei	99.43
PRK01029	428	tolB translocation protein TolB; Provisional	99.43
PRK01029	428	tolB translocation protein TolB; Provisional	99.41
KOG1064	2439	consensus RAVE (regulator of V-ATPase assembly) co	99.41
KOG0974	967	consensus WD-repeat protein WDR6, WD repeat superf	99.41
KOG4547	541	consensus WD40 repeat-containing protein [General	99.39
TIGR03300	377	assembly_YfgL outer membrane assembly lipoprotein	99.38
KOG1409	404	consensus Uncharacterized conserved protein, conta	99.37
COG5170	460	CDC55 Serine/threonine protein phosphatase 2A, reg	99.32
KOG1064	2439	consensus RAVE (regulator of V-ATPase assembly) co	99.32
KOG2315	566	consensus Predicted translation initiation factor	99.32
TIGR02658	352	TTQ_MADH_Hv methylamine dehydrogenase heavy chain.	99.32
KOG2314	698	consensus Translation initiation factor 3, subunit	99.3
COG4946	668	Uncharacterized protein related to the periplasmic	99.3
TIGR03300	377	assembly_YfgL outer membrane assembly lipoprotein	99.27
COG2706	346	3-carboxymuconate cyclase [Carbohydrate transport	99.26
COG5354	561	Uncharacterized protein, contains Trp-Asp (WD) rep	99.23
KOG2041	1189	consensus WD40 repeat protein [General function pr	99.23
KOG4532	344	consensus WD40-like repeat containing protein [Gen	99.22
KOG2314	698	consensus Translation initiation factor 3, subunit	99.22
PF04762	928	IKI3: IKI3 family; InterPro: IPR006849 Members of	99.2
COG5354	561	Uncharacterized protein, contains Trp-Asp (WD) rep	99.2
KOG4190	1034	consensus Uncharacterized conserved protein [Funct	99.2
KOG0309	1081	consensus Conserved WD40 repeat-containing protein	99.2
KOG1912	1062	consensus WD40 repeat protein [General function pr	99.2
PF08450	246	SGL: SMP-30/Gluconolaconase/LRE-like region; Inter	99.19
PRK04043	419	tolB translocation protein TolB; Provisional	99.18
KOG2695	425	consensus WD40 repeat protein [General function pr	99.17
KOG0882	558	consensus Cyclophilin-related peptidyl-prolyl cis-	99.16
KOG2041	1189	consensus WD40 repeat protein [General function pr	99.16
PF15492	282	Nbas_N: Neuroblastoma-amplified sequence, N termin	99.14
KOG4714	319	consensus Nucleoporin [Nuclear structure]	99.14
PRK04043	419	tolB translocation protein TolB; Provisional	99.14
KOG1645	463	consensus RING-finger-containing E3 ubiquitin liga	99.13
PF04762	928	IKI3: IKI3 family; InterPro: IPR006849 Members of	99.12
KOG1912	1062	consensus WD40 repeat protein [General function pr	99.11
KOG4532	344	consensus WD40-like repeat containing protein [Gen	99.1
KOG3914	390	consensus WD repeat protein WDR4 [Function unknown	99.07
KOG3914	390	consensus WD repeat protein WDR4 [Function unknown	99.07
PF15492	282	Nbas_N: Neuroblastoma-amplified sequence, N termin	99.05
COG5170	460	CDC55 Serine/threonine protein phosphatase 2A, reg	99.04
PF08450	246	SGL: SMP-30/Gluconolaconase/LRE-like region; Inter	99.03
PF13360	238	PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A	99.02
KOG0309	1081	consensus Conserved WD40 repeat-containing protein	98.99
PF00400	39	WD40: WD domain, G-beta repeat; InterPro: IPR01978	98.98
PRK11138	394	outer membrane biogenesis protein BamB; Provisiona	98.96
PF07433	305	DUF1513: Protein of unknown function (DUF1513); In	98.93
PF13360	238	PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A	98.9
PF00400	39	WD40: WD domain, G-beta repeat; InterPro: IPR01978	98.88
KOG4714	319	consensus Nucleoporin [Nuclear structure]	98.87
KOG2695	425	consensus WD40 repeat protein [General function pr	98.86
PF07433	305	DUF1513: Protein of unknown function (DUF1513); In	98.83
COG4946	668	Uncharacterized protein related to the periplasmic	98.77
PRK11138	394	outer membrane biogenesis protein BamB; Provisiona	98.75
KOG1275	1118	consensus PAB-dependent poly(A) ribonuclease, subu	98.72
KOG1275	1118	consensus PAB-dependent poly(A) ribonuclease, subu	98.68
PF11768	545	DUF3312: Protein of unknown function (DUF3312); In	98.67
PRK02888	635	nitrous-oxide reductase; Validated	98.67
COG3391	381	Uncharacterized conserved protein [Function unknow	98.65
KOG1832	1516	consensus HIV-1 Vpr-binding protein [Cell cycle co	98.63
KOG2114	933	consensus Vacuolar assembly/sorting protein PEP5/V	98.63
KOG1645	463	consensus RING-finger-containing E3 ubiquitin liga	98.61
KOG1920	1265	consensus IkappaB kinase complex, IKAP component [	98.61
PF00930	353	DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-termin	98.57
KOG2066	846	consensus Vacuolar assembly/sorting protein VPS41	98.5
cd00216	488	PQQ_DH Dehydrogenases with pyrrolo-quinoline quino	98.49
KOG2114	933	consensus Vacuolar assembly/sorting protein PEP5/V	98.48
KOG1832	1516	consensus HIV-1 Vpr-binding protein [Cell cycle co	98.48
KOG4649	354	consensus PQQ (pyrrolo-quinoline quinone) repeat p	98.43
KOG0882	558	consensus Cyclophilin-related peptidyl-prolyl cis-	98.41
KOG3617	1416	consensus WD40 and TPR repeat-containing protein [	98.4
PRK02888	635	nitrous-oxide reductase; Validated	98.39
KOG4649	354	consensus PQQ (pyrrolo-quinoline quinone) repeat p	98.36
PF08596	395	Lgl_C: Lethal giant larvae(Lgl) like, C-terminal;	98.36
KOG2066	846	consensus Vacuolar assembly/sorting protein VPS41	98.36
KOG1008	783	consensus Uncharacterized conserved protein, conta	98.35
PF06977	248	SdiA-regulated: SdiA-regulated; InterPro: IPR00972	98.33
KOG1920	1265	consensus IkappaB kinase complex, IKAP component [	98.3
PF11768	545	DUF3312: Protein of unknown function (DUF3312); In	98.27
COG0823	425	TolB Periplasmic component of the Tol biopolymer t	98.24
KOG1008	783	consensus Uncharacterized conserved protein, conta	98.21
PF08553	794	VID27: VID27 cytoplasmic protein; InterPro: IPR013	98.2
PF06977	248	SdiA-regulated: SdiA-regulated; InterPro: IPR00972	98.18
COG3391	381	Uncharacterized conserved protein [Function unknow	98.18
PF04053	443	Coatomer_WDAD: Coatomer WD associated region ; Int	98.14
PF14583	386	Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C	98.11
PF03178	321	CPSF_A: CPSF A subunit region; InterPro: IPR004871	98.1
cd00216	488	PQQ_DH Dehydrogenases with pyrrolo-quinoline quino	98.09
PF04053	443	Coatomer_WDAD: Coatomer WD associated region ; Int	98.08
PF14783	111	BBS2_Mid: Ciliary BBSome complex subunit 2, middle	98.04
COG0823	425	TolB Periplasmic component of the Tol biopolymer t	97.93
PF08596	395	Lgl_C: Lethal giant larvae(Lgl) like, C-terminal;	97.91
KOG3621	726	consensus WD40 repeat-containing protein [General	97.83
PF06433	342	Me-amine-dh_H: Methylamine dehydrogenase heavy cha	97.82
smart00320	40	WD40 WD40 repeats. Note that these repeats are per	97.81
smart00320	40	WD40 WD40 repeats. Note that these repeats are per	97.81
KOG3621	726	consensus WD40 repeat-containing protein [General	97.74
COG3386	307	Gluconolactonase [Carbohydrate transport and metab	97.73
KOG2395	644	consensus Protein involved in vacuole import and d	97.72
PF08553	794	VID27: VID27 cytoplasmic protein; InterPro: IPR013	97.68
PF03178	321	CPSF_A: CPSF A subunit region; InterPro: IPR004871	97.67
PF14783	111	BBS2_Mid: Ciliary BBSome complex subunit 2, middle	97.65
KOG4499	310	consensus Ca2+-binding protein Regucalcin/SMP30 [I	97.65
KOG3617	1416	consensus WD40 and TPR repeat-containing protein [	97.63
PF00780	275	CNH: CNH domain; InterPro: IPR001180 Based on sequ	97.63
PHA02713	557	hypothetical protein; Provisional	97.62
PRK13616	591	lipoprotein LpqB; Provisional	97.62
PF00930	353	DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-termin	97.61
KOG1897	1096	consensus Damage-specific DNA binding complex, sub	97.52
KOG4640	665	consensus Anaphase-promoting complex (APC), subuni	97.47
TIGR03075	527	PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methan	97.43
PF04841	410	Vps16_N: Vps16, N-terminal region; InterPro: IPR00	97.39
PF06433	342	Me-amine-dh_H: Methylamine dehydrogenase heavy cha	97.38
PF14583	386	Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C	97.36
PHA02713	557	hypothetical protein; Provisional	97.36
TIGR03075	527	PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methan	97.33
PRK13616	591	lipoprotein LpqB; Provisional	97.31
COG3490	366	Uncharacterized protein conserved in bacteria [Fun	97.3
KOG4640	665	consensus Anaphase-promoting complex (APC), subuni	97.29
KOG2395	644	consensus Protein involved in vacuole import and d	97.29
KOG4441	571	consensus Proteins containing BTB/POZ and Kelch do	97.21
KOG2444	238	consensus WD40 repeat protein [General function pr	97.19
COG3823	262	Glutamine cyclotransferase [Posttranslational modi	97.18
KOG4441	571	consensus Proteins containing BTB/POZ and Kelch do	97.16
PF00780	275	CNH: CNH domain; InterPro: IPR001180 Based on sequ	97.12
KOG2444	238	consensus WD40 repeat protein [General function pr	97.08
PF12894	47	Apc4_WD40: Anaphase-promoting complex subunit 4 WD	96.97
PF02897	414	Peptidase_S9_N: Prolyl oligopeptidase, N-terminal	96.93
PF02897	414	Peptidase_S9_N: Prolyl oligopeptidase, N-terminal	96.93
COG3386	307	Gluconolactonase [Carbohydrate transport and metab	96.88
KOG2079	1206	consensus Vacuolar assembly/sorting protein VPS8 [	96.84
KOG2079	1206	consensus Vacuolar assembly/sorting protein VPS8 [	96.83
PHA03098	534	kelch-like protein; Provisional	96.54
PHA03098	534	kelch-like protein; Provisional	96.53
PF05096	264	Glu_cyclase_2: Glutamine cyclotransferase; InterPr	96.5
PF05096	264	Glu_cyclase_2: Glutamine cyclotransferase; InterPr	96.48
COG5167	776	VID27 Protein involved in vacuole import and degra	96.28
PF12894	47	Apc4_WD40: Anaphase-promoting complex subunit 4 WD	96.17
KOG4499	310	consensus Ca2+-binding protein Regucalcin/SMP30 [I	95.88
PF04841	410	Vps16_N: Vps16, N-terminal region; InterPro: IPR00	95.8
COG3204	316	Uncharacterized protein conserved in bacteria [Fun	95.78
TIGR02604	367	Piru_Ver_Nterm putative membrane-bound dehydrogena	95.76
PF10313	43	DUF2415: Uncharacterised protein domain (DUF2415);	95.66
PHA02790	480	Kelch-like protein; Provisional	95.65
PF15390	671	DUF4613: Domain of unknown function (DUF4613)	95.58
KOG3630	1405	consensus Nuclear pore complex, Nup214/CAN compone	95.51
PHA02790	480	Kelch-like protein; Provisional	95.45
PF10647	253	Gmad1: Lipoprotein LpqB beta-propeller domain; Int	95.43
COG3204	316	Uncharacterized protein conserved in bacteria [Fun	95.42
PF05694	461	SBP56: 56kDa selenium binding protein (SBP56); Int	95.28
PF05694	461	SBP56: 56kDa selenium binding protein (SBP56); Int	95.26
TIGR03118	336	PEPCTERM_chp_1 conserved hypothetical protein TIGR	95.17
COG5167	776	VID27 Protein involved in vacuole import and degra	94.97
PF14870	302	PSII_BNR: Photosynthesis system II assembly factor	94.93
PF02333	381	Phytase: Phytase; InterPro: IPR003431 Phytase (3.1	94.79
PF10168	717	Nup88: Nuclear pore component; InterPro: IPR019321	94.77
PF07995	331	GSDH: Glucose / Sorbosone dehydrogenase; InterPro:	94.76
COG3490	366	Uncharacterized protein conserved in bacteria [Fun	94.64
KOG3630	1405	consensus Nuclear pore complex, Nup214/CAN compone	94.61
PF12234	631	Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR0	94.48
COG3823	262	Glutamine cyclotransferase [Posttranslational modi	94.42
TIGR03074	764	PQQ_membr_DH membrane-bound PQQ-dependent dehydrog	94.37
PF10168	717	Nup88: Nuclear pore component; InterPro: IPR019321	94.05
PF10313	43	DUF2415: Uncharacterised protein domain (DUF2415);	94.02
PF14870	302	PSII_BNR: Photosynthesis system II assembly factor	94.02
PRK10115	686	protease 2; Provisional	93.84
PF07569	219	Hira: TUP1-like enhancer of split; InterPro: IPR01	93.74
PRK13684	334	Ycf48-like protein; Provisional	93.72
PF12234	631	Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR0	93.64
PF08728	717	CRT10: CRT10; InterPro: IPR014839 CRT10 is a trans	93.44
KOG4460	741	consensus Nuclear pore complex, Nup88/rNup84 compo	92.83
PF15390	671	DUF4613: Domain of unknown function (DUF4613)	92.6
PRK10115	686	protease 2; Provisional	92.38
KOG4460	741	consensus Nuclear pore complex, Nup88/rNup84 compo	92.36
KOG1916	1283	consensus Nuclear protein, contains WD40 repeats [	92.25
KOG2280	829	consensus Vacuolar assembly/sorting protein VPS16	92.02
TIGR03118	336	PEPCTERM_chp_1 conserved hypothetical protein TIGR	91.82
PF14655	415	RAB3GAP2_N: Rab3 GTPase-activating protein regulat	91.72
PF14655	415	RAB3GAP2_N: Rab3 GTPase-activating protein regulat	91.63
PF07676	39	PD40: WD40-like Beta Propeller Repeat; InterPro: I	91.52
TIGR03074	764	PQQ_membr_DH membrane-bound PQQ-dependent dehydrog	91.37
TIGR02604	367	Piru_Ver_Nterm putative membrane-bound dehydrogena	91.29
KOG2247	615	consensus WD40 repeat-containing protein [General	91.17
KOG1916	1283	consensus Nuclear protein, contains WD40 repeats [	90.88
PRK14131	376	N-acetylneuraminic acid mutarotase; Provisional	89.94
PF07569	219	Hira: TUP1-like enhancer of split; InterPro: IPR01	89.67
TIGR02276	42	beta_rpt_yvtn 40-residue YVTN family beta-propelle	89.51
PF07995	331	GSDH: Glucose / Sorbosone dehydrogenase; InterPro:	89.04
KOG1900	1311	consensus Nuclear pore complex, Nup155 component (	88.65
PF11715	547	Nup160: Nucleoporin Nup120/160; InterPro: IPR02171	88.47
KOG2280	829	consensus Vacuolar assembly/sorting protein VPS16	88.23
KOG1897	1096	consensus Damage-specific DNA binding complex, sub	88.14
PF13449	326	Phytase-like: Esterase-like activity of phytase	88.13
PF12768	281	Rax2: Cortical protein marker for cell polarity	88.07
TIGR02276	42	beta_rpt_yvtn 40-residue YVTN family beta-propelle	87.74
KOG2247	615	consensus WD40 repeat-containing protein [General	87.71
PF08728	717	CRT10: CRT10; InterPro: IPR014839 CRT10 is a trans	87.36
PF10647	253	Gmad1: Lipoprotein LpqB beta-propeller domain; Int	87.19
PF11715	547	Nup160: Nucleoporin Nup120/160; InterPro: IPR02171	86.83
TIGR03548	323	mutarot_permut cyclically-permuted mutatrotase fam	85.94
PF12657	173	TFIIIC_delta: Transcription factor IIIC subunit de	85.44
PF07676	39	PD40: WD40-like Beta Propeller Repeat; InterPro: I	83.8
PF08801	422	Nucleoporin_N: Nup133 N terminal like; InterPro: I	83.59
PF08801	422	Nucleoporin_N: Nup133 N terminal like; InterPro: I	83.48
TIGR03548	323	mutarot_permut cyclically-permuted mutatrotase fam	83.0
PF14781	136	BBS2_N: Ciliary BBSome complex subunit 2, N-termin	82.22
TIGR03547	346	muta_rot_YjhT mutatrotase, YjhT family. Members of	82.1
PF01436	28	NHL: NHL repeat; InterPro: IPR001258 The NHL repea	81.95
PF07250	243	Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterP	81.83
PF14761	215	HPS3_N: Hermansky-Pudlak syndrome 3	81.25
KOG2377	657	consensus Uncharacterized conserved protein [Funct	80.86
PRK14131	376	N-acetylneuraminic acid mutarotase; Provisional	80.57

>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]

Probab=100.00  E-value=7.3e-54  Score=340.39  Aligned_cols=291  Identities=26%  Similarity=0.413  Sum_probs=269.6

Q ss_pred             cchhhhhhccccceEEEEEeecCCCCCcEEEEeeCCCcEEEEcCCCCcceeeccccccceEEEEeCCC--CCEEEEeeCC
Q 021247            4 AGLKSVENAHEESVWAVTWVPATETRPALLLTGSLDETVKLWRPDDMQLERTNTGHCLGVVSVAAHPS--GIIAASASLD   81 (315)
Q Consensus         4 ~~~~~~~~~h~~~v~~v~~~~~~~~~~~~l~sgs~d~~v~~w~~~~~~~~~~~~~h~~~v~~~~~~~~--g~~l~s~~~d   81 (315)
                      +.+-...-+-+.+|..+.|+++++    .|+|||++|.+++|+..+......+.||+..+.++.|+|.  +.-++|++.|
T Consensus       165 ~~l~~SQ~gd~rPis~~~fS~ds~----~laT~swsG~~kvW~~~~~~~~~~l~gH~~~v~~~~fhP~~~~~~lat~s~D  240 (459)
T KOG0272|consen  165 LELVCSQVGDTRPISGCSFSRDSK----HLATGSWSGLVKVWSVPQCNLLQTLRGHTSRVGAAVFHPVDSDLNLATASAD  240 (459)
T ss_pred             hhhhhhhccCCCcceeeEeecCCC----eEEEeecCCceeEeecCCcceeEEEeccccceeeEEEccCCCccceeeeccC
Confidence            334444567889999999999886    6999999999999999888888999999999999999997  5689999999


Q ss_pred             CeEEEEECCCCceeEEeeCCcccEEEEEECCCCCeEEEEecCCCeEEEEecCCcceeeeecCCCCCCCCCCccCCCCcce
Q 021247           82 SFVRVFDVDTNASIATLEASPSEVWQMQFDPKGTTLAVAGGGSASVKLWDTATWNLIATLSIPRPEGLKPTDKSSSKKFV  161 (315)
Q Consensus        82 ~~i~~w~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i  161 (315)
                      |++++|++.+...+..+.+|...|..++|+|+|.++ .+++.|.+-++||++++..+.             ...+|...|
T Consensus       241 gtvklw~~~~e~~l~~l~gH~~RVs~VafHPsG~~L-~TasfD~tWRlWD~~tk~ElL-------------~QEGHs~~v  306 (459)
T KOG0272|consen  241 GTVKLWKLSQETPLQDLEGHLARVSRVAFHPSGKFL-GTASFDSTWRLWDLETKSELL-------------LQEGHSKGV  306 (459)
T ss_pred             CceeeeccCCCcchhhhhcchhhheeeeecCCCcee-eecccccchhhcccccchhhH-------------hhccccccc
Confidence            999999999999999999999999999999999965 688999999999999865442             234566779


Q ss_pred             EEEEECCCCCEEEEecCCCcEEEEEcccceeeeeecCCccceEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCeeEEEeec
Q 021247          162 LSVAWSPDGRRIACGSMDGTISVFDVTRAKFLHHLEGHFMPVRSLVYSPVDPRVLFSASDDTHVHMYDAEGKSLVTAMSG  241 (315)
Q Consensus       162 ~~~~~~~~~~~l~~~s~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~  241 (315)
                      .+++|+|||..+++|+.|..-++||+++++.+..+.+|..+|.++.|+| ++..+++|+.|++++|||++....+..+.+
T Consensus       307 ~~iaf~~DGSL~~tGGlD~~~RvWDlRtgr~im~L~gH~k~I~~V~fsP-NGy~lATgs~Dnt~kVWDLR~r~~ly~ipA  385 (459)
T KOG0272|consen  307 FSIAFQPDGSLAATGGLDSLGRVWDLRTGRCIMFLAGHIKEILSVAFSP-NGYHLATGSSDNTCKVWDLRMRSELYTIPA  385 (459)
T ss_pred             ceeEecCCCceeeccCccchhheeecccCcEEEEecccccceeeEeECC-CceEEeecCCCCcEEEeeecccccceeccc
Confidence            9999999999999999999999999999999999999999999999999 889999999999999999999999999999


Q ss_pred             ccccEEEEEEcC-CCCeEEEEeCCCcEEEEecCccceehcccccccceEEEEEeeCCCEEEEEeCCCcEEEee
Q 021247          242 HASWVLSVDASP-DGAAITTGSSDRTVKLWDLNMRAAMQSMTNHTDQVWGVSFRPLGGRVVSVSDDKSISLYE  313 (315)
Q Consensus       242 ~~~~i~~~~~~~-~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~i~i~~  313 (315)
                      |.+-|..+.|+| .|.+|+|++.|++++||...++.+++++.+|++.|.++.++|++..+++++.|++|++|.
T Consensus       386 H~nlVS~Vk~~p~~g~fL~TasyD~t~kiWs~~~~~~~ksLaGHe~kV~s~Dis~d~~~i~t~s~DRT~KLW~  458 (459)
T KOG0272|consen  386 HSNLVSQVKYSPQEGYFLVTASYDNTVKIWSTRTWSPLKSLAGHEGKVISLDISPDSQAIATSSFDRTIKLWR  458 (459)
T ss_pred             ccchhhheEecccCCeEEEEcccCcceeeecCCCcccchhhcCCccceEEEEeccCCceEEEeccCceeeecc
Confidence            999999999999 688999999999999999999999999999999999999999999999999999999995

>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=3.2e-53  Score=333.15  Aligned_cols=285  Identities=29%  Similarity=0.473  Sum_probs=254.8

Q ss_pred             hhhccccceEEEEEeecCCCCCcEEEEeeCCCcEEEEcCCCCc-ceeeccccccceEEEEeCC-----CCCEEEEeeCCC
Q 021247            9 VENAHEESVWAVTWVPATETRPALLLTGSLDETVKLWRPDDMQ-LERTNTGHCLGVVSVAAHP-----SGIIAASASLDS   82 (315)
Q Consensus         9 ~~~~h~~~v~~v~~~~~~~~~~~~l~sgs~d~~v~~w~~~~~~-~~~~~~~h~~~v~~~~~~~-----~g~~l~s~~~d~   82 (315)
                      +.++|...|.||+|+|++.    .||+|+.||+|++||+.+++ ..+.+.+|...|++++|.|     .+.++++++.||
T Consensus       152 t~KgH~~WVlcvawsPDgk----~iASG~~dg~I~lwdpktg~~~g~~l~gH~K~It~Lawep~hl~p~~r~las~skDg  227 (480)
T KOG0271|consen  152 TCKGHKNWVLCVAWSPDGK----KIASGSKDGSIRLWDPKTGQQIGRALRGHKKWITALAWEPLHLVPPCRRLASSSKDG  227 (480)
T ss_pred             eecCCccEEEEEEECCCcc----hhhccccCCeEEEecCCCCCcccccccCcccceeEEeecccccCCCccceecccCCC
Confidence            3579999999999999987    49999999999999998766 4567899999999999975     567999999999


Q ss_pred             eEEEEECCCCceeEEeeCCcccEEEEEECCCCCeEEEEecCCCeEEEEecCCcceeeeecCCCCCCCCCCccCCCCcceE
Q 021247           83 FVRVFDVDTNASIATLEASPSEVWQMQFDPKGTTLAVAGGGSASVKLWDTATWNLIATLSIPRPEGLKPTDKSSSKKFVL  162 (315)
Q Consensus        83 ~i~~w~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~  162 (315)
                      .++|||+..+.++.++.+|..+|.+++|--  ..++++|+.|++|++|+...+++...+.             +|..+|+
T Consensus       228 ~vrIWd~~~~~~~~~lsgHT~~VTCvrwGG--~gliySgS~DrtIkvw~a~dG~~~r~lk-------------GHahwvN  292 (480)
T KOG0271|consen  228 SVRIWDTKLGTCVRTLSGHTASVTCVRWGG--EGLIYSGSQDRTIKVWRALDGKLCRELK-------------GHAHWVN  292 (480)
T ss_pred             CEEEEEccCceEEEEeccCccceEEEEEcC--CceEEecCCCceEEEEEccchhHHHhhc-------------ccchhee
Confidence            999999999999999999999999999964  4478899999999999998877665443             2333444


Q ss_pred             EEEEC-----------C-------------------------CCCEEEEecCCCcEEEEEccc-ceeeeeecCCccceEE
Q 021247          163 SVAWS-----------P-------------------------DGRRIACGSMDGTISVFDVTR-AKFLHHLEGHFMPVRS  205 (315)
Q Consensus       163 ~~~~~-----------~-------------------------~~~~l~~~s~dg~i~i~d~~~-~~~~~~~~~~~~~v~~  205 (315)
                      .++++           |                         .++.+++|+.|.++++|+... .+++..+.+|...|+.
T Consensus       293 ~lalsTdy~LRtgaf~~t~~~~~~~se~~~~Al~rY~~~~~~~~erlVSgsDd~tlflW~p~~~kkpi~rmtgHq~lVn~  372 (480)
T KOG0271|consen  293 HLALSTDYVLRTGAFDHTGRKPKSFSEEQKKALERYEAVLKDSGERLVSGSDDFTLFLWNPFKSKKPITRMTGHQALVNH  372 (480)
T ss_pred             eeeccchhhhhccccccccccCCChHHHHHHHHHHHHHhhccCcceeEEecCCceEEEecccccccchhhhhchhhheee
Confidence            44433           2                         235699999999999999754 4578899999999999


Q ss_pred             EEEcCCCCcEEEEEeCCCeEEEEeCCCCeeEEEeecccccEEEEEEcCCCCeEEEEeCCCcEEEEecCccceehcccccc
Q 021247          206 LVYSPVDPRVLFSASDDTHVHMYDAEGKSLVTAMSGHASWVLSVDASPDGAAITTGSSDRTVKLWDLNMRAAMQSMTNHT  285 (315)
Q Consensus       206 ~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~  285 (315)
                      +.|+| +++++++++-|..|++||.++++.+..+++|.+.|..++|+.|.++|++|+.|.++++|++++++....+++|.
T Consensus       373 V~fSP-d~r~IASaSFDkSVkLW~g~tGk~lasfRGHv~~VYqvawsaDsRLlVS~SkDsTLKvw~V~tkKl~~DLpGh~  451 (480)
T KOG0271|consen  373 VSFSP-DGRYIASASFDKSVKLWDGRTGKFLASFRGHVAAVYQVAWSADSRLLVSGSKDSTLKVWDVRTKKLKQDLPGHA  451 (480)
T ss_pred             EEECC-CccEEEEeecccceeeeeCCCcchhhhhhhccceeEEEEeccCccEEEEcCCCceEEEEEeeeeeecccCCCCC
Confidence            99999 78999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cceEEEEEeeCCCEEEEEeCCCcEEEee
Q 021247          286 DQVWGVSFRPLGGRVVSVSDDKSISLYE  313 (315)
Q Consensus       286 ~~v~~~~~s~~~~~l~s~~~d~~i~i~~  313 (315)
                      ++|.++.|+|||.++++++.|+.++||.
T Consensus       452 DEVf~vDwspDG~rV~sggkdkv~~lw~  479 (480)
T KOG0271|consen  452 DEVFAVDWSPDGQRVASGGKDKVLRLWR  479 (480)
T ss_pred             ceEEEEEecCCCceeecCCCceEEEeec
Confidence            9999999999999999999999999995

>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=2.9e-52  Score=327.71  Aligned_cols=289  Identities=32%  Similarity=0.427  Sum_probs=259.8

Q ss_pred             hhhhccccceEEEEEeecCCCCCcEEEEeeCCCcEEEEcCCCCcceeeccccccceEEEEeCCCCCEEEEeeCCCeEEEE
Q 021247            8 SVENAHEESVWAVTWVPATETRPALLLTGSLDETVKLWRPDDMQLERTNTGHCLGVVSVAAHPSGIIAASASLDSFVRVF   87 (315)
Q Consensus         8 ~~~~~h~~~v~~v~~~~~~~~~~~~l~sgs~d~~v~~w~~~~~~~~~~~~~h~~~v~~~~~~~~g~~l~s~~~d~~i~~w   87 (315)
                      +...+|.++|.|++|+|.+.    .|+|||.|.++++||+++.......++|..-|.+++|+|||+.|++|+.||+|++|
T Consensus       109 sS~~GH~e~Vl~~~fsp~g~----~l~tGsGD~TvR~WD~~TeTp~~t~KgH~~WVlcvawsPDgk~iASG~~dg~I~lw  184 (480)
T KOG0271|consen  109 SSIAGHGEAVLSVQFSPTGS----RLVTGSGDTTVRLWDLDTETPLFTCKGHKNWVLCVAWSPDGKKIASGSKDGSIRLW  184 (480)
T ss_pred             cccCCCCCcEEEEEecCCCc----eEEecCCCceEEeeccCCCCcceeecCCccEEEEEEECCCcchhhccccCCeEEEe
Confidence            44679999999999999775    69999999999999999988889999999999999999999999999999999999


Q ss_pred             ECCCCcee-EEeeCCcccEEEEEECCC----CCeEEEEecCCCeEEEEecCCcceeeeecCCCCCCCCCCccCCCCcceE
Q 021247           88 DVDTNASI-ATLEASPSEVWQMQFDPK----GTTLAVAGGGSASVKLWDTATWNLIATLSIPRPEGLKPTDKSSSKKFVL  162 (315)
Q Consensus        88 ~~~~~~~~-~~~~~~~~~v~~~~~~~~----~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~  162 (315)
                      |.++++.+ ..+..|...|.+++|.|-    +...+++++.||.++|||+..++++..+             .+|...|+
T Consensus       185 dpktg~~~g~~l~gH~K~It~Lawep~hl~p~~r~las~skDg~vrIWd~~~~~~~~~l-------------sgHT~~VT  251 (480)
T KOG0271|consen  185 DPKTGQQIGRALRGHKKWITALAWEPLHLVPPCRRLASSSKDGSVRIWDTKLGTCVRTL-------------SGHTASVT  251 (480)
T ss_pred             cCCCCCcccccccCcccceeEEeecccccCCCccceecccCCCCEEEEEccCceEEEEe-------------ccCccceE
Confidence            99998764 678999999999999873    1235688999999999999887776655             35666799


Q ss_pred             EEEECCCCCEEEEecCCCcEEEEEcccceeeeeecCCccceEEEEEc-----------C---------------------
Q 021247          163 SVAWSPDGRRIACGSMDGTISVFDVTRAKFLHHLEGHFMPVRSLVYS-----------P---------------------  210 (315)
Q Consensus       163 ~~~~~~~~~~l~~~s~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~-----------~---------------------  210 (315)
                      |++|.-+| ++++|+.|++|++|+...+++...+++|...|+.++.+           |                     
T Consensus       252 CvrwGG~g-liySgS~DrtIkvw~a~dG~~~r~lkGHahwvN~lalsTdy~LRtgaf~~t~~~~~~~se~~~~Al~rY~~  330 (480)
T KOG0271|consen  252 CVRWGGEG-LIYSGSQDRTIKVWRALDGKLCRELKGHAHWVNHLALSTDYVLRTGAFDHTGRKPKSFSEEQKKALERYEA  330 (480)
T ss_pred             EEEEcCCc-eEEecCCCceEEEEEccchhHHHhhcccchheeeeeccchhhhhccccccccccCCChHHHHHHHHHHHHH
Confidence            99998654 89999999999999999999999999999989888776           2                     


Q ss_pred             ---CCCcEEEEEeCCCeEEEEeCCC-CeeEEEeecccccEEEEEEcCCCCeEEEEeCCCcEEEEecCccceehccccccc
Q 021247          211 ---VDPRVLFSASDDTHVHMYDAEG-KSLVTAMSGHASWVLSVDASPDGAAITTGSSDRTVKLWDLNMRAAMQSMTNHTD  286 (315)
Q Consensus       211 ---~~~~~l~s~~~d~~i~~wd~~~-~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~  286 (315)
                         ..+..+++|++|.++.+|+... .+.+..+.+|..-|+.+.|+||++++|+++-|..|++|+.++|+.+.++.+|-+
T Consensus       331 ~~~~~~erlVSgsDd~tlflW~p~~~kkpi~rmtgHq~lVn~V~fSPd~r~IASaSFDkSVkLW~g~tGk~lasfRGHv~  410 (480)
T KOG0271|consen  331 VLKDSGERLVSGSDDFTLFLWNPFKSKKPITRMTGHQALVNHVSFSPDGRYIASASFDKSVKLWDGRTGKFLASFRGHVA  410 (480)
T ss_pred             hhccCcceeEEecCCceEEEecccccccchhhhhchhhheeeEEECCCccEEEEeecccceeeeeCCCcchhhhhhhccc
Confidence               1234699999999999999764 457788999999999999999999999999999999999999999999999999


Q ss_pred             ceEEEEEeeCCCEEEEEeCCCcEEEeec
Q 021247          287 QVWGVSFRPLGGRVVSVSDDKSISLYEY  314 (315)
Q Consensus       287 ~v~~~~~s~~~~~l~s~~~d~~i~i~~~  314 (315)
                      +|..++||.|.+.|++++.|.++++|++
T Consensus       411 ~VYqvawsaDsRLlVS~SkDsTLKvw~V  438 (480)
T KOG0271|consen  411 AVYQVAWSADSRLLVSGSKDSTLKVWDV  438 (480)
T ss_pred             eeEEEEeccCccEEEEcCCCceEEEEEe
Confidence            9999999999999999999999999986

>KOG0286 consensus G-protein beta subunit [General function prediction only]

Probab=100.00  E-value=7.9e-47  Score=287.49  Aligned_cols=289  Identities=21%  Similarity=0.332  Sum_probs=258.7

Q ss_pred             chhhhhhccccceEEEEEeecCCCCCcEEEEeeCCCcEEEEcCCCCcceeeccccccceEEEEeCCCCCEEEEeeCCCeE
Q 021247            5 GLKSVENAHEESVWAVTWVPATETRPALLLTGSLDETVKLWRPDDMQLERTNTGHCLGVVSVAAHPSGIIAASASLDSFV   84 (315)
Q Consensus         5 ~~~~~~~~h~~~v~~v~~~~~~~~~~~~l~sgs~d~~v~~w~~~~~~~~~~~~~h~~~v~~~~~~~~g~~l~s~~~d~~i   84 (315)
                      +...++++|.++|+++.|+++.+    .|+++|.||.+.+||..+......++-...-|..++|+|.|+++++|+-|..+
T Consensus        46 ~~rr~LkGH~~Ki~~~~ws~Dsr----~ivSaSqDGklIvWDs~TtnK~haipl~s~WVMtCA~sPSg~~VAcGGLdN~C  121 (343)
T KOG0286|consen   46 RTRRTLKGHLNKIYAMDWSTDSR----RIVSASQDGKLIVWDSFTTNKVHAIPLPSSWVMTCAYSPSGNFVACGGLDNKC  121 (343)
T ss_pred             eeEEEecccccceeeeEecCCcC----eEEeeccCCeEEEEEcccccceeEEecCceeEEEEEECCCCCeEEecCcCcee
Confidence            45577999999999999999887    59999999999999987766556666666789999999999999999999999


Q ss_pred             EEEECCCC------ceeEEeeCCcccEEEEEECCCCCeEEEEecCCCeEEEEecCCcceeeeecCCCCCCCCCCccCCCC
Q 021247           85 RVFDVDTN------ASIATLEASPSEVWQMQFDPKGTTLAVAGGGSASVKLWDTATWNLIATLSIPRPEGLKPTDKSSSK  158 (315)
Q Consensus        85 ~~w~~~~~------~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~  158 (315)
                      -|+++.+.      +..+.+.+|.+.+.++.|-+++.  ++++++|.++.+||+++++.+..+.             +|.
T Consensus       122 siy~ls~~d~~g~~~v~r~l~gHtgylScC~f~dD~~--ilT~SGD~TCalWDie~g~~~~~f~-------------GH~  186 (343)
T KOG0286|consen  122 SIYPLSTRDAEGNVRVSRELAGHTGYLSCCRFLDDNH--ILTGSGDMTCALWDIETGQQTQVFH-------------GHT  186 (343)
T ss_pred             EEEecccccccccceeeeeecCccceeEEEEEcCCCc--eEecCCCceEEEEEcccceEEEEec-------------CCc
Confidence            99999855      23456888999999999988654  4688999999999999998887774             345


Q ss_pred             cceEEEEECC-CCCEEEEecCCCcEEEEEcccceeeeeecCCccceEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCeeEE
Q 021247          159 KFVLSVAWSP-DGRRIACGSMDGTISVFDVTRAKFLHHLEGHFMPVRSLVYSPVDPRVLFSASDDTHVHMYDAEGKSLVT  237 (315)
Q Consensus       159 ~~i~~~~~~~-~~~~l~~~s~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~  237 (315)
                      .-|.++.++| +++.|++|+-|+..++||++.+...+.+.+|+..|+++.|+| ++.-+++|++|++.++||++....+.
T Consensus       187 gDV~slsl~p~~~ntFvSg~cD~~aklWD~R~~~c~qtF~ghesDINsv~ffP-~G~afatGSDD~tcRlyDlRaD~~~a  265 (343)
T KOG0286|consen  187 GDVMSLSLSPSDGNTFVSGGCDKSAKLWDVRSGQCVQTFEGHESDINSVRFFP-SGDAFATGSDDATCRLYDLRADQELA  265 (343)
T ss_pred             ccEEEEecCCCCCCeEEecccccceeeeeccCcceeEeecccccccceEEEcc-CCCeeeecCCCceeEEEeecCCcEEe
Confidence            5599999999 899999999999999999999999999999999999999999 67889999999999999999877766


Q ss_pred             Eee--cccccEEEEEEcCCCCeEEEEeCCCcEEEEecCccceehcccccccceEEEEEeeCCCEEEEEeCCCcEEEee
Q 021247          238 AMS--GHASWVLSVDASPDGAAITTGSSDRTVKLWDLNMRAAMQSMTNHTDQVWGVSFRPLGGRVVSVSDDKSISLYE  313 (315)
Q Consensus       238 ~~~--~~~~~i~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~i~i~~  313 (315)
                      .+.  .-..+|++++||..|++|++|..|.++.+||.-.++....+.+|+..|.++..+|||..|++|+.|.++|||.
T Consensus       266 ~ys~~~~~~gitSv~FS~SGRlLfagy~d~~c~vWDtlk~e~vg~L~GHeNRvScl~~s~DG~av~TgSWDs~lriW~  343 (343)
T KOG0286|consen  266 VYSHDSIICGITSVAFSKSGRLLFAGYDDFTCNVWDTLKGERVGVLAGHENRVSCLGVSPDGMAVATGSWDSTLRIWA  343 (343)
T ss_pred             eeccCcccCCceeEEEcccccEEEeeecCCceeEeeccccceEEEeeccCCeeEEEEECCCCcEEEecchhHheeecC
Confidence            665  3356799999999999999999999999999999999999999999999999999999999999999999994

>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]

Probab=100.00  E-value=1.6e-45  Score=278.71  Aligned_cols=292  Identities=22%  Similarity=0.330  Sum_probs=250.1

Q ss_pred             cchhhhhhccccceEEEEEeecCCCCCcEEEEeeCCCcEEEEcCC-----CCcceeeccccccceEEEEeCCCCCEEEEe
Q 021247            4 AGLKSVENAHEESVWAVTWVPATETRPALLLTGSLDETVKLWRPD-----DMQLERTNTGHCLGVVSVAAHPSGIIAASA   78 (315)
Q Consensus         4 ~~~~~~~~~h~~~v~~v~~~~~~~~~~~~l~sgs~d~~v~~w~~~-----~~~~~~~~~~h~~~v~~~~~~~~g~~l~s~   78 (315)
                      +.+...+++|++.|.+++-.+..   +.++++++.|.++.+|++.     .+...+.+.||...|..+..+++|++.+++
T Consensus         5 l~l~~tl~gh~d~Vt~la~~~~~---~~~l~sasrDk~ii~W~L~~dd~~~G~~~r~~~GHsH~v~dv~~s~dg~~alS~   81 (315)
T KOG0279|consen    5 LVLRGTLEGHTDWVTALAIKIKN---SDILVSASRDKTIIVWKLTSDDIKYGVPVRRLTGHSHFVSDVVLSSDGNFALSA   81 (315)
T ss_pred             heeeeeecCCCceEEEEEeecCC---CceEEEcccceEEEEEEeccCccccCceeeeeeccceEecceEEccCCceEEec
Confidence            44566789999999999998864   3489999999999999864     344577889999999999999999999999


Q ss_pred             eCCCeEEEEECCCCceeEEeeCCcccEEEEEECCCCCeEEEEecCCCeEEEEecCCcceeeeecCCCCCCCCCCccCCCC
Q 021247           79 SLDSFVRVFDVDTNASIATLEASPSEVWQMQFDPKGTTLAVAGGGSASVKLWDTATWNLIATLSIPRPEGLKPTDKSSSK  158 (315)
Q Consensus        79 ~~d~~i~~w~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~  158 (315)
                      ++|+++|+||+.+++..+.+.+|...|.+++|+|++..+ ++|+.|.+|++|++... +..++  .+         ..++
T Consensus        82 swD~~lrlWDl~~g~~t~~f~GH~~dVlsva~s~dn~qi-vSGSrDkTiklwnt~g~-ck~t~--~~---------~~~~  148 (315)
T KOG0279|consen   82 SWDGTLRLWDLATGESTRRFVGHTKDVLSVAFSTDNRQI-VSGSRDKTIKLWNTLGV-CKYTI--HE---------DSHR  148 (315)
T ss_pred             cccceEEEEEecCCcEEEEEEecCCceEEEEecCCCcee-ecCCCcceeeeeeeccc-EEEEE--ec---------CCCc
Confidence            999999999999999999999999999999999998865 79999999999998653 22222  11         1236


Q ss_pred             cceEEEEECCC--CCEEEEecCCCcEEEEEcccceeeeeecCCccceEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCeeE
Q 021247          159 KFVLSVAWSPD--GRRIACGSMDGTISVFDVTRAKFLHHLEGHFMPVRSLVYSPVDPRVLFSASDDTHVHMYDAEGKSLV  236 (315)
Q Consensus       159 ~~i~~~~~~~~--~~~l~~~s~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~  236 (315)
                      .+|+|++|+|+  ..+|++++.|+++++||+++.+....+.+|+..++.+.++| ++.++++|+.||.+.+||++.++.+
T Consensus       149 ~WVscvrfsP~~~~p~Ivs~s~DktvKvWnl~~~~l~~~~~gh~~~v~t~~vSp-DGslcasGgkdg~~~LwdL~~~k~l  227 (315)
T KOG0279|consen  149 EWVSCVRFSPNESNPIIVSASWDKTVKVWNLRNCQLRTTFIGHSGYVNTVTVSP-DGSLCASGGKDGEAMLWDLNEGKNL  227 (315)
T ss_pred             CcEEEEEEcCCCCCcEEEEccCCceEEEEccCCcchhhccccccccEEEEEECC-CCCEEecCCCCceEEEEEccCCcee
Confidence            78999999997  67899999999999999999999999999999999999999 7889999999999999999998886


Q ss_pred             EEeecccccEEEEEEcCCCCeEEEEeCCCcEEEEecCccceehcccc----c-----ccceEEEEEeeCCCEEEEEeCCC
Q 021247          237 TAMSGHASWVLSVDASPDGAAITTGSSDRTVKLWDLNMRAAMQSMTN----H-----TDQVWGVSFRPLGGRVVSVSDDK  307 (315)
Q Consensus       237 ~~~~~~~~~i~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~----~-----~~~v~~~~~s~~~~~l~s~~~d~  307 (315)
                      +.+ +|...|.+++|+|+...|+. ..+..|+|||+.+++.+.++.-    .     .....+++||++|..|+++-.|+
T Consensus       228 ysl-~a~~~v~sl~fspnrywL~~-at~~sIkIwdl~~~~~v~~l~~d~~g~s~~~~~~~clslaws~dG~tLf~g~td~  305 (315)
T KOG0279|consen  228 YSL-EAFDIVNSLCFSPNRYWLCA-ATATSIKIWDLESKAVVEELKLDGIGPSSKAGDPICLSLAWSADGQTLFAGYTDN  305 (315)
T ss_pred             Eec-cCCCeEeeEEecCCceeEee-ccCCceEEEeccchhhhhhccccccccccccCCcEEEEEEEcCCCcEEEeeecCC
Confidence            655 47788999999998765554 4566699999999887766532    1     23467899999999999999999


Q ss_pred             cEEEeec
Q 021247          308 SISLYEY  314 (315)
Q Consensus       308 ~i~i~~~  314 (315)
                      .|++|.+
T Consensus       306 ~irv~qv  312 (315)
T KOG0279|consen  306 VIRVWQV  312 (315)
T ss_pred             cEEEEEe
Confidence            9999986

>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]

Probab=100.00  E-value=1.1e-47  Score=305.28  Aligned_cols=253  Identities=35%  Similarity=0.496  Sum_probs=234.8

Q ss_pred             ccchhhhhhccccceEEEEEeecCCCCCcEEEEeeCCCcEEEEcCCCCcceeeccccccceEEEEeCCCCCEEEEeeCCC
Q 021247            3 FAGLKSVENAHEESVWAVTWVPATETRPALLLTGSLDETVKLWRPDDMQLERTNTGHCLGVVSVAAHPSGIIAASASLDS   82 (315)
Q Consensus         3 ~~~~~~~~~~h~~~v~~v~~~~~~~~~~~~l~sgs~d~~v~~w~~~~~~~~~~~~~h~~~v~~~~~~~~g~~l~s~~~d~   82 (315)
                      .++...++.+|+..|.++.|.|...  ...++||+.||++++|+.++...+..+.+|...|..++|+|+|++|++++.|.
T Consensus       206 ~~~~~~~l~gH~~~v~~~~fhP~~~--~~~lat~s~Dgtvklw~~~~e~~l~~l~gH~~RVs~VafHPsG~~L~TasfD~  283 (459)
T KOG0272|consen  206 QCNLLQTLRGHTSRVGAAVFHPVDS--DLNLATASADGTVKLWKLSQETPLQDLEGHLARVSRVAFHPSGKFLGTASFDS  283 (459)
T ss_pred             CcceeEEEeccccceeeEEEccCCC--ccceeeeccCCceeeeccCCCcchhhhhcchhhheeeeecCCCceeeeccccc
Confidence            3455667889999999999999741  23599999999999999998888888999999999999999999999999999


Q ss_pred             eEEEEECCCCceeEEeeCCcccEEEEEECCCCCeEEEEecCCCeEEEEecCCcceeeeecCCCCCCCCCCccCCCCcceE
Q 021247           83 FVRVFDVDTNASIATLEASPSEVWQMQFDPKGTTLAVAGGGSASVKLWDTATWNLIATLSIPRPEGLKPTDKSSSKKFVL  162 (315)
Q Consensus        83 ~i~~w~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~  162 (315)
                      +-|+||++++..+...++|...|.+++|+|+|. ++++|+.|..-+|||+|++..+-.+.             +|...|.
T Consensus       284 tWRlWD~~tk~ElL~QEGHs~~v~~iaf~~DGS-L~~tGGlD~~~RvWDlRtgr~im~L~-------------gH~k~I~  349 (459)
T KOG0272|consen  284 TWRLWDLETKSELLLQEGHSKGVFSIAFQPDGS-LAATGGLDSLGRVWDLRTGRCIMFLA-------------GHIKEIL  349 (459)
T ss_pred             chhhcccccchhhHhhcccccccceeEecCCCc-eeeccCccchhheeecccCcEEEEec-------------cccccee
Confidence            999999999999888899999999999999998 56899999999999999998876553             3556699


Q ss_pred             EEEECCCCCEEEEecCCCcEEEEEcccceeeeeecCCccceEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCeeEEEeecc
Q 021247          163 SVAWSPDGRRIACGSMDGTISVFDVTRAKFLHHLEGHFMPVRSLVYSPVDPRVLFSASDDTHVHMYDAEGKSLVTAMSGH  242 (315)
Q Consensus       163 ~~~~~~~~~~l~~~s~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~  242 (315)
                      +++|+|+|..||+|+.|++++|||++..+.+..+.+|...|..++|+|..+++|++++.|+++++|..++..+++.+.+|
T Consensus       350 ~V~fsPNGy~lATgs~Dnt~kVWDLR~r~~ly~ipAH~nlVS~Vk~~p~~g~fL~TasyD~t~kiWs~~~~~~~ksLaGH  429 (459)
T KOG0272|consen  350 SVAFSPNGYHLATGSSDNTCKVWDLRMRSELYTIPAHSNLVSQVKYSPQEGYFLVTASYDNTVKIWSTRTWSPLKSLAGH  429 (459)
T ss_pred             eEeECCCceEEeecCCCCcEEEeeecccccceecccccchhhheEecccCCeEEEEcccCcceeeecCCCcccchhhcCC
Confidence            99999999999999999999999999999999999999999999999988999999999999999999999999999999


Q ss_pred             cccEEEEEEcCCCCeEEEEeCCCcEEEEe
Q 021247          243 ASWVLSVDASPDGAAITTGSSDRTVKLWD  271 (315)
Q Consensus       243 ~~~i~~~~~~~~~~~l~s~~~d~~i~iwd  271 (315)
                      .+.|.+++++|+++.++|++.|+++++|.
T Consensus       430 e~kV~s~Dis~d~~~i~t~s~DRT~KLW~  458 (459)
T KOG0272|consen  430 EGKVISLDISPDSQAIATSSFDRTIKLWR  458 (459)
T ss_pred             ccceEEEEeccCCceEEEeccCceeeecc
Confidence            99999999999999999999999999995

>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]

Probab=100.00  E-value=1.8e-44  Score=275.48  Aligned_cols=288  Identities=27%  Similarity=0.400  Sum_probs=253.5

Q ss_pred             hhhhccccceEEEEEeecCCCCCcEEEEeeCCCcEEEEcCC-CCcceeeccccccceEEEEeCCCCCEEEEeeCCCeEEE
Q 021247            8 SVENAHEESVWAVTWVPATETRPALLLTGSLDETVKLWRPD-DMQLERTNTGHCLGVVSVAAHPSGIIAASASLDSFVRV   86 (315)
Q Consensus         8 ~~~~~h~~~v~~v~~~~~~~~~~~~l~sgs~d~~v~~w~~~-~~~~~~~~~~h~~~v~~~~~~~~g~~l~s~~~d~~i~~   86 (315)
                      -.+.+|..+|+.+.|.|++.    +|+||+.|..|.+|+.. ..+-...+++|.++|..+.+.+++..+++++.|++++.
T Consensus        41 m~l~gh~geI~~~~F~P~gs----~~aSgG~Dr~I~LWnv~gdceN~~~lkgHsgAVM~l~~~~d~s~i~S~gtDk~v~~  116 (338)
T KOG0265|consen   41 MLLPGHKGEIYTIKFHPDGS----CFASGGSDRAIVLWNVYGDCENFWVLKGHSGAVMELHGMRDGSHILSCGTDKTVRG  116 (338)
T ss_pred             hhcCCCcceEEEEEECCCCC----eEeecCCcceEEEEeccccccceeeeccccceeEeeeeccCCCEEEEecCCceEEE
Confidence            34679999999999999664    79999999999999954 33445567799999999999999999999999999999


Q ss_pred             EECCCCceeEEeeCCcccEEEEEECCCCCeEEEEecCCCeEEEEecCCcceeeeecCCCCCCCCCCccCCCCcceEEEEE
Q 021247           87 FDVDTNASIATLEASPSEVWQMQFDPKGTTLAVAGGGSASVKLWDTATWNLIATLSIPRPEGLKPTDKSSSKKFVLSVAW  166 (315)
Q Consensus        87 w~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~  166 (315)
                      ||.++++++...+.|..-|..+.-..-|..++.+++.|+++++||+|+...++++.              .+..++++.|
T Consensus       117 wD~~tG~~~rk~k~h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~k~~~~t~~--------------~kyqltAv~f  182 (338)
T KOG0265|consen  117 WDAETGKRIRKHKGHTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRKKEAIKTFE--------------NKYQLTAVGF  182 (338)
T ss_pred             EecccceeeehhccccceeeecCccccCCeEEEecCCCceEEEEeecccchhhccc--------------cceeEEEEEe
Confidence            99999999999999999999988666678889999999999999999766554442              2345899999


Q ss_pred             CCCCCEEEEecCCCcEEEEEcccceeeeeecCCccceEEEEEcCCCCcEEEEEeCCCeEEEEeCCC----CeeEEEeecc
Q 021247          167 SPDGRRIACGSMDGTISVFDVTRAKFLHHLEGHFMPVRSLVYSPVDPRVLFSASDDTHVHMYDAEG----KSLVTAMSGH  242 (315)
Q Consensus       167 ~~~~~~l~~~s~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~----~~~~~~~~~~  242 (315)
                      ..++..+.+|+-|+.|++||++.+.....+.+|..+|+.+..+| ++.++++-+.|.++++||.+.    ..++..+.+|
T Consensus       183 ~d~s~qv~sggIdn~ikvWd~r~~d~~~~lsGh~DtIt~lsls~-~gs~llsnsMd~tvrvwd~rp~~p~~R~v~if~g~  261 (338)
T KOG0265|consen  183 KDTSDQVISGGIDNDIKVWDLRKNDGLYTLSGHADTITGLSLSR-YGSFLLSNSMDNTVRVWDVRPFAPSQRCVKIFQGH  261 (338)
T ss_pred             cccccceeeccccCceeeeccccCcceEEeecccCceeeEEecc-CCCccccccccceEEEEEecccCCCCceEEEeecc
Confidence            99999999999999999999999999999999999999999998 667899999999999999874    3345666554


Q ss_pred             --cc--cEEEEEEcCCCCeEEEEeCCCcEEEEecCccceehcccccccceEEEEEeeCCCEEEEEeCCCcEEEeec
Q 021247          243 --AS--WVLSVDASPDGAAITTGSSDRTVKLWDLNMRAAMQSMTNHTDQVWGVSFRPLGGRVVSVSDDKSISLYEY  314 (315)
Q Consensus       243 --~~--~i~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~i~i~~~  314 (315)
                        ..  -...++|+|++..+.+|+.|+.+++||...++.+..+++|.+.|+++.|+|....|.+++.|++|.+=++
T Consensus       262 ~hnfeknlL~cswsp~~~~i~ags~dr~vyvwd~~~r~~lyklpGh~gsvn~~~Fhp~e~iils~~sdk~i~lgei  337 (338)
T KOG0265|consen  262 IHNFEKNLLKCSWSPNGTKITAGSADRFVYVWDTTSRRILYKLPGHYGSVNEVDFHPTEPIILSCSSDKTIYLGEI  337 (338)
T ss_pred             hhhhhhhcceeeccCCCCccccccccceEEEeecccccEEEEcCCcceeEEEeeecCCCcEEEEeccCceeEeecc
Confidence              22  2456789999999999999999999999999999999999999999999999999999999999987544

>KOG0295 consensus WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=1.1e-44  Score=283.26  Aligned_cols=288  Identities=27%  Similarity=0.411  Sum_probs=265.2

Q ss_pred             hhhhccccceEEEEEeecCCCCCcEEEEeeCCCcEEEEcCCCCcceeeccccccceEEEEeCCCCCEEEEeeCCCeEEEE
Q 021247            8 SVENAHEESVWAVTWVPATETRPALLLTGSLDETVKLWRPDDMQLERTNTGHCLGVVSVAAHPSGIIAASASLDSFVRVF   87 (315)
Q Consensus         8 ~~~~~h~~~v~~v~~~~~~~~~~~~l~sgs~d~~v~~w~~~~~~~~~~~~~h~~~v~~~~~~~~g~~l~s~~~d~~i~~w   87 (315)
                      +-+.+|..+|+.+-|.|...    +.++++.|++|++||..++++++.+.||..++..++|+..|+++++++.|=.+++|
T Consensus       102 ~~l~g~r~~vt~v~~hp~~~----~v~~as~d~tikv~D~~tg~~e~~LrGHt~sv~di~~~a~Gk~l~tcSsDl~~~LW  177 (406)
T KOG0295|consen  102 QKLAGHRSSVTRVIFHPSEA----LVVSASEDATIKVFDTETGELERSLRGHTDSVFDISFDASGKYLATCSSDLSAKLW  177 (406)
T ss_pred             hhhhccccceeeeeeccCce----EEEEecCCceEEEEEccchhhhhhhhccccceeEEEEecCccEEEecCCccchhhe
Confidence            34568999999999988654    79999999999999999999999999999999999999999999999999999999


Q ss_pred             ECCC-CceeEEeeCCcccEEEEEECCCCCeEEEEecCCCeEEEEecCCcceeeeecCCCCCCCCCCccCCCCcceEEEEE
Q 021247           88 DVDT-NASIATLEASPSEVWQMQFDPKGTTLAVAGGGSASVKLWDTATWNLIATLSIPRPEGLKPTDKSSSKKFVLSVAW  166 (315)
Q Consensus        88 ~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~  166 (315)
                      |..+ .+++....+|...|.++.|-|.|.++ ++++.|.+|+.|++.++.++.++..             |..++..++.
T Consensus       178 d~~~~~~c~ks~~gh~h~vS~V~f~P~gd~i-lS~srD~tik~We~~tg~cv~t~~~-------------h~ewvr~v~v  243 (406)
T KOG0295|consen  178 DFDTFFRCIKSLIGHEHGVSSVFFLPLGDHI-LSCSRDNTIKAWECDTGYCVKTFPG-------------HSEWVRMVRV  243 (406)
T ss_pred             eHHHHHHHHHHhcCcccceeeEEEEecCCee-eecccccceeEEecccceeEEeccC-------------chHhEEEEEe
Confidence            9987 45677778888889999999998755 7899999999999999988887743             4458999999


Q ss_pred             CCCCCEEEEecCCCcEEEEEcccceeeeeecCCccceEEEEEcCC--------------CCcEEEEEeCCCeEEEEeCCC
Q 021247          167 SPDGRRIACGSMDGTISVFDVTRAKFLHHLEGHFMPVRSLVYSPV--------------DPRVLFSASDDTHVHMYDAEG  232 (315)
Q Consensus       167 ~~~~~~l~~~s~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~--------------~~~~l~s~~~d~~i~~wd~~~  232 (315)
                      +.||..+++++.|.++++|-+.+.++...++.|+.+|.+++|-|.              +++++++++.|++|++||+..
T Consensus       244 ~~DGti~As~s~dqtl~vW~~~t~~~k~~lR~hEh~vEci~wap~~~~~~i~~at~~~~~~~~l~s~SrDktIk~wdv~t  323 (406)
T KOG0295|consen  244 NQDGTIIASCSNDQTLRVWVVATKQCKAELREHEHPVECIAWAPESSYPSISEATGSTNGGQVLGSGSRDKTIKIWDVST  323 (406)
T ss_pred             cCCeeEEEecCCCceEEEEEeccchhhhhhhccccceEEEEecccccCcchhhccCCCCCccEEEeecccceEEEEeccC
Confidence            999999999999999999999999888899999999999999752              235899999999999999999


Q ss_pred             CeeEEEeecccccEEEEEEcCCCCeEEEEeCCCcEEEEecCccceehcccccccceEEEEEeeCCCEEEEEeCCCcEEEe
Q 021247          233 KSLVTAMSGHASWVLSVDASPDGAAITTGSSDRTVKLWDLNMRAAMQSMTNHTDQVWGVSFRPLGGRVVSVSDDKSISLY  312 (315)
Q Consensus       233 ~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~i~i~  312 (315)
                      +.++-++.+|..+|..++|+|.|++|+++..|+++++||++.+.++++++.|+.-++++.|+.+..++++|+-|.++++|
T Consensus       324 g~cL~tL~ghdnwVr~~af~p~Gkyi~ScaDDktlrvwdl~~~~cmk~~~ah~hfvt~lDfh~~~p~VvTGsVdqt~Kvw  403 (406)
T KOG0295|consen  324 GMCLFTLVGHDNWVRGVAFSPGGKYILSCADDKTLRVWDLKNLQCMKTLEAHEHFVTSLDFHKTAPYVVTGSVDQTVKVW  403 (406)
T ss_pred             CeEEEEEecccceeeeeEEcCCCeEEEEEecCCcEEEEEeccceeeeccCCCcceeEEEecCCCCceEEeccccceeeee
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             e
Q 021247          313 E  313 (315)
Q Consensus       313 ~  313 (315)
                      .
T Consensus       404 E  404 (406)
T KOG0295|consen  404 E  404 (406)
T ss_pred             e
Confidence            6

>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]

Probab=100.00  E-value=3e-43  Score=262.41  Aligned_cols=270  Identities=25%  Similarity=0.386  Sum_probs=233.8

Q ss_pred             CCcEEEEeeCCCcEEEEcCCCCcceeeccccccceEEEEeCCCCCEEEEeeCCCeEEEEECCCCc--eeEEeeCCcccEE
Q 021247           29 RPALLLTGSLDETVKLWRPDDMQLERTNTGHCLGVVSVAAHPSGIIAASASLDSFVRVFDVDTNA--SIATLEASPSEVW  106 (315)
Q Consensus        29 ~~~~l~sgs~d~~v~~w~~~~~~~~~~~~~h~~~v~~~~~~~~g~~l~s~~~d~~i~~w~~~~~~--~~~~~~~~~~~v~  106 (315)
                      .+.+|+|+|.|.+|++|...++.+.+.++-....|+.+.+.|++..|++++.- .||+||++++.  ++.+++.|...|.
T Consensus         9 ~~viLvsA~YDhTIRfWqa~tG~C~rTiqh~dsqVNrLeiTpdk~~LAaa~~q-hvRlyD~~S~np~Pv~t~e~h~kNVt   87 (311)
T KOG0315|consen    9 DPVILVSAGYDHTIRFWQALTGICSRTIQHPDSQVNRLEITPDKKDLAAAGNQ-HVRLYDLNSNNPNPVATFEGHTKNVT   87 (311)
T ss_pred             CceEEEeccCcceeeeeehhcCeEEEEEecCccceeeEEEcCCcchhhhccCC-eeEEEEccCCCCCceeEEeccCCceE
Confidence            45689999999999999999999999998778899999999999999988754 69999999875  5889999999999


Q ss_pred             EEEECCCCCeEEEEecCCCeEEEEecCCcceeeeecCCCCCCCCCCccCCCCcceEEEEECCCCCEEEEecCCCcEEEEE
Q 021247          107 QMQFDPKGTTLAVAGGGSASVKLWDTATWNLIATLSIPRPEGLKPTDKSSSKKFVLSVAWSPDGRRIACGSMDGTISVFD  186 (315)
Q Consensus       107 ~~~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~s~dg~i~i~d  186 (315)
                      .+.|..+|+- +++|++||+++|||+|.....+.+              .+..+|+++..+|+...|++|..+|.|++||
T Consensus        88 aVgF~~dgrW-MyTgseDgt~kIWdlR~~~~qR~~--------------~~~spVn~vvlhpnQteLis~dqsg~irvWD  152 (311)
T KOG0315|consen   88 AVGFQCDGRW-MYTGSEDGTVKIWDLRSLSCQRNY--------------QHNSPVNTVVLHPNQTELISGDQSGNIRVWD  152 (311)
T ss_pred             EEEEeecCeE-EEecCCCceEEEEeccCcccchhc--------------cCCCCcceEEecCCcceEEeecCCCcEEEEE
Confidence            9999999885 579999999999999974333222              3445699999999999999999999999999


Q ss_pred             cccceeeeeec-CCccceEEEEEcCCCCcEEEEEeCCCeEEEEeCCCC------eeEEEeecccccEEEEEEcCCCCeEE
Q 021247          187 VTRAKFLHHLE-GHFMPVRSLVYSPVDPRVLFSASDDTHVHMYDAEGK------SLVTAMSGHASWVLSVDASPDGAAIT  259 (315)
Q Consensus       187 ~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~------~~~~~~~~~~~~i~~~~~~~~~~~l~  259 (315)
                      +....+...+. ....+|.++...| ++.+++.+...|..++|++-..      ..+..++.|.+.|..+.+||++++|+
T Consensus       153 l~~~~c~~~liPe~~~~i~sl~v~~-dgsml~a~nnkG~cyvW~l~~~~~~s~l~P~~k~~ah~~~il~C~lSPd~k~la  231 (311)
T KOG0315|consen  153 LGENSCTHELIPEDDTSIQSLTVMP-DGSMLAAANNKGNCYVWRLLNHQTASELEPVHKFQAHNGHILRCLLSPDVKYLA  231 (311)
T ss_pred             ccCCccccccCCCCCcceeeEEEcC-CCcEEEEecCCccEEEEEccCCCccccceEhhheecccceEEEEEECCCCcEEE
Confidence            98776554443 2346789999998 6789999999999999998653      34456788999999999999999999


Q ss_pred             EEeCCCcEEEEecCcc-ceehcccccccceEEEEEeeCCCEEEEEeCCCcEEEeecC
Q 021247          260 TGSSDRTVKLWDLNMR-AAMQSMTNHTDQVWGVSFRPLGGRVVSVSDDKSISLYEYS  315 (315)
Q Consensus       260 s~~~d~~i~iwd~~~~-~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~i~i~~~~  315 (315)
                      +++.|.+++||+.+.. +...++.+|...+|.++||.+|.||++++.|+.+++|+++
T Consensus       232 t~ssdktv~iwn~~~~~kle~~l~gh~rWvWdc~FS~dg~YlvTassd~~~rlW~~~  288 (311)
T KOG0315|consen  232 TCSSDKTVKIWNTDDFFKLELVLTGHQRWVWDCAFSADGEYLVTASSDHTARLWDLS  288 (311)
T ss_pred             eecCCceEEEEecCCceeeEEEeecCCceEEeeeeccCccEEEecCCCCceeecccc
Confidence            9999999999999876 4456678999999999999999999999999999999974

>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]

Probab=100.00  E-value=2.5e-45  Score=290.77  Aligned_cols=282  Identities=22%  Similarity=0.402  Sum_probs=247.7

Q ss_pred             ccceEEEEEeecCCCCCcEEEEeeCCCcEEEEcCCCCcceeeccccccceEEEEeCCCCCEEEEeeCCCeEEEEECCCCc
Q 021247           14 EESVWAVTWVPATETRPALLLTGSLDETVKLWRPDDMQLERTNTGHCLGVVSVAAHPSGIIAASASLDSFVRVFDVDTNA   93 (315)
Q Consensus        14 ~~~v~~v~~~~~~~~~~~~l~sgs~d~~v~~w~~~~~~~~~~~~~h~~~v~~~~~~~~g~~l~s~~~d~~i~~w~~~~~~   93 (315)
                      ...|+.|.|.|++.    .|++|+..|.+.+|+.........+..|..+|.++.++++|.+++||+.+|.|++|+.+-+.
T Consensus        96 kc~V~~v~WtPeGR----RLltgs~SGEFtLWNg~~fnFEtilQaHDs~Vr~m~ws~~g~wmiSgD~gG~iKyWqpnmnn  171 (464)
T KOG0284|consen   96 KCPVNVVRWTPEGR----RLLTGSQSGEFTLWNGTSFNFETILQAHDSPVRTMKWSHNGTWMISGDKGGMIKYWQPNMNN  171 (464)
T ss_pred             ccceeeEEEcCCCc----eeEeecccccEEEecCceeeHHHHhhhhcccceeEEEccCCCEEEEcCCCceEEecccchhh
Confidence            45899999999987    49999999999999987666666778999999999999999999999999999999987654


Q ss_pred             eeEEeeCCcccEEEEEECCCCCeEEEEecCCCeEEEEecCCcceeeeecCCCCCCCCCCccCCCCcceEEEEECCCCCEE
Q 021247           94 SIATLEASPSEVWQMQFDPKGTTLAVAGGGSASVKLWDTATWNLIATLSIPRPEGLKPTDKSSSKKFVLSVAWSPDGRRI  173 (315)
Q Consensus        94 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l  173 (315)
                      ......+|...|.+++|+|+...+ +++++|++|+|||.+..+.-..+             .+|.--|.++.|+|...++
T Consensus       172 Vk~~~ahh~eaIRdlafSpnDskF-~t~SdDg~ikiWdf~~~kee~vL-------------~GHgwdVksvdWHP~kgLi  237 (464)
T KOG0284|consen  172 VKIIQAHHAEAIRDLAFSPNDSKF-LTCSDDGTIKIWDFRMPKEERVL-------------RGHGWDVKSVDWHPTKGLI  237 (464)
T ss_pred             hHHhhHhhhhhhheeccCCCCcee-EEecCCCeEEEEeccCCchhhee-------------ccCCCCcceeccCCcccee
Confidence            443444555899999999987755 78999999999999865543333             2344458999999999999


Q ss_pred             EEecCCCcEEEEEcccceeeeeecCCccceEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCeeEEEeecccccEEEEEEcC
Q 021247          174 ACGSMDGTISVFDVTRAKFLHHLEGHFMPVRSLVYSPVDPRVLFSASDDTHVHMYDAEGKSLVTAMSGHASWVLSVDASP  253 (315)
Q Consensus       174 ~~~s~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~i~~~~~~~  253 (315)
                      ++|+.|+.|++||.+++.++.++.+|+..|..+.|.| ++.+|++++.|..+++||++..+.+..+++|...++++.|+|
T Consensus       238 asgskDnlVKlWDprSg~cl~tlh~HKntVl~~~f~~-n~N~Llt~skD~~~kv~DiR~mkEl~~~r~Hkkdv~~~~WhP  316 (464)
T KOG0284|consen  238 ASGSKDNLVKLWDPRSGSCLATLHGHKNTVLAVKFNP-NGNWLLTGSKDQSCKVFDIRTMKELFTYRGHKKDVTSLTWHP  316 (464)
T ss_pred             EEccCCceeEeecCCCcchhhhhhhccceEEEEEEcC-CCCeeEEccCCceEEEEehhHhHHHHHhhcchhhheeecccc
Confidence            9999999999999999999999999999999999999 559999999999999999998888888899999999999999


Q ss_pred             -CCCeEEEEeCCCcEEEEecCccceehcc-cccccceEEEEEeeCCCEEEEEeCCCcEEEeec
Q 021247          254 -DGAAITTGSSDRTVKLWDLNMRAAMQSM-TNHTDQVWGVSFRPLGGRVVSVSDDKSISLYEY  314 (315)
Q Consensus       254 -~~~~l~s~~~d~~i~iwd~~~~~~~~~~-~~~~~~v~~~~~s~~~~~l~s~~~d~~i~i~~~  314 (315)
                       ...+|.+|+.||.|..|.+...+++..+ .+|...||+++|+|-|+.|++|+.|.++++|.-
T Consensus       317 ~~~~lftsgg~Dgsvvh~~v~~~~p~~~i~~AHd~~iwsl~~hPlGhil~tgsnd~t~rfw~r  379 (464)
T KOG0284|consen  317 LNESLFTSGGSDGSVVHWVVGLEEPLGEIPPAHDGEIWSLAYHPLGHILATGSNDRTVRFWTR  379 (464)
T ss_pred             ccccceeeccCCCceEEEeccccccccCCCcccccceeeeeccccceeEeecCCCcceeeecc
Confidence             5678999999999999999866666555 468899999999999999999999999999963

>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]

Probab=100.00  E-value=3.9e-41  Score=271.41  Aligned_cols=280  Identities=22%  Similarity=0.368  Sum_probs=250.5

Q ss_pred             ccceEEEEEeecCCCCCcEEEEeeCCCcEEEEcCCCCcceeeccccccceEEEEeCCCCCEEEEeeCCCeEEEEECCCCc
Q 021247           14 EESVWAVTWVPATETRPALLLTGSLDETVKLWRPDDMQLERTNTGHCLGVVSVAAHPSGIIAASASLDSFVRVFDVDTNA   93 (315)
Q Consensus        14 ~~~v~~v~~~~~~~~~~~~l~sgs~d~~v~~w~~~~~~~~~~~~~h~~~v~~~~~~~~g~~l~s~~~d~~i~~w~~~~~~   93 (315)
                      ...|++++|+.++.    +||+|+.||.+++|+. ++.+...+..|++||.++.|+..|.+|++++.|+++-+||..++.
T Consensus       235 nkdVT~L~Wn~~G~----~LatG~~~G~~riw~~-~G~l~~tl~~HkgPI~slKWnk~G~yilS~~vD~ttilwd~~~g~  309 (524)
T KOG0273|consen  235 NKDVTSLDWNNDGT----LLATGSEDGEARIWNK-DGNLISTLGQHKGPIFSLKWNKKGTYILSGGVDGTTILWDAHTGT  309 (524)
T ss_pred             cCCcceEEecCCCC----eEEEeecCcEEEEEec-CchhhhhhhccCCceEEEEEcCCCCEEEeccCCccEEEEeccCce
Confidence            35899999998776    7999999999999986 455667788899999999999999999999999999999999999


Q ss_pred             eeEEeeCCcccEEEEEECCCCCeEEEEecCCCeEEEEecCCcceeeeecCCCCCCCCCCccCCCCcceEEEEECCCCCEE
Q 021247           94 SIATLEASPSEVWQMQFDPKGTTLAVAGGGSASVKLWDTATWNLIATLSIPRPEGLKPTDKSSSKKFVLSVAWSPDGRRI  173 (315)
Q Consensus        94 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l  173 (315)
                      ..+.+..|..+-..+.|-.+.  -+++++.|+.|+|+-+....++.++             .+|...|.++.|+|.|.+|
T Consensus       310 ~~q~f~~~s~~~lDVdW~~~~--~F~ts~td~~i~V~kv~~~~P~~t~-------------~GH~g~V~alk~n~tg~LL  374 (524)
T KOG0273|consen  310 VKQQFEFHSAPALDVDWQSND--EFATSSTDGCIHVCKVGEDRPVKTF-------------IGHHGEVNALKWNPTGSLL  374 (524)
T ss_pred             EEEeeeeccCCccceEEecCc--eEeecCCCceEEEEEecCCCcceee-------------ecccCceEEEEECCCCceE
Confidence            999998888886778886543  3577889999999988655444443             3466679999999999999


Q ss_pred             EEecCCCcEEEEEcccceeeeeecCCccceEEEEEcCCCC--------cEEEEEeCCCeEEEEeCCCCeeEEEeeccccc
Q 021247          174 ACGSMDGTISVFDVTRAKFLHHLEGHFMPVRSLVYSPVDP--------RVLFSASDDTHVHMYDAEGKSLVTAMSGHASW  245 (315)
Q Consensus       174 ~~~s~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~--------~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~  245 (315)
                      ++++.|++++||..........+..|..+|..+.|+|.++        ..+++++.|+++++||...+.++..+..|..+
T Consensus       375 aS~SdD~TlkiWs~~~~~~~~~l~~Hskei~t~~wsp~g~v~~n~~~~~~l~sas~dstV~lwdv~~gv~i~~f~kH~~p  454 (524)
T KOG0273|consen  375 ASCSDDGTLKIWSMGQSNSVHDLQAHSKEIYTIKWSPTGPVTSNPNMNLMLASASFDSTVKLWDVESGVPIHTLMKHQEP  454 (524)
T ss_pred             EEecCCCeeEeeecCCCcchhhhhhhccceeeEeecCCCCccCCCcCCceEEEeecCCeEEEEEccCCceeEeeccCCCc
Confidence            9999999999999988888999999999999999998653        46999999999999999999999999999999


Q ss_pred             EEEEEEcCCCCeEEEEeCCCcEEEEecCccceehcccccccceEEEEEeeCCCEEEEEeCCCcEEEeec
Q 021247          246 VLSVDASPDGAAITTGSSDRTVKLWDLNMRAAMQSMTNHTDQVWGVSFRPLGGRVVSVSDDKSISLYEY  314 (315)
Q Consensus       246 i~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~i~i~~~  314 (315)
                      |.+++|+|+|+++|+|+.||.|.+|+.++++.++...+ .+.|..+.|+.+|.+|..+-.|+.+++-|+
T Consensus       455 VysvafS~~g~ylAsGs~dg~V~iws~~~~~l~~s~~~-~~~Ifel~Wn~~G~kl~~~~sd~~vcvldl  522 (524)
T KOG0273|consen  455 VYSVAFSPNGRYLASGSLDGCVHIWSTKTGKLVKSYQG-TGGIFELCWNAAGDKLGACASDGSVCVLDL  522 (524)
T ss_pred             eEEEEecCCCcEEEecCCCCeeEeccccchheeEeecC-CCeEEEEEEcCCCCEEEEEecCCCceEEEe
Confidence            99999999999999999999999999999999988765 457999999999999999999999999876

>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]

Probab=100.00  E-value=5.9e-41  Score=290.97  Aligned_cols=286  Identities=30%  Similarity=0.494  Sum_probs=255.2

Q ss_pred             hccccceEEEEEeecCCCCCcEEEEeeCCCcEEEEcCCCCc--ceeeccccccceEEEEeCCCCCEEEEeeCCCeEEEEE
Q 021247           11 NAHEESVWAVTWVPATETRPALLLTGSLDETVKLWRPDDMQ--LERTNTGHCLGVVSVAAHPSGIIAASASLDSFVRVFD   88 (315)
Q Consensus        11 ~~h~~~v~~v~~~~~~~~~~~~l~sgs~d~~v~~w~~~~~~--~~~~~~~h~~~v~~~~~~~~g~~l~s~~~d~~i~~w~   88 (315)
                      ..|...|.++.|+|.+.    .+++++.|+.+++|+....+  +.+.+.+|...|..++|+|+|.++++++.|++||+||
T Consensus       156 ~~~~~sv~~~~fs~~g~----~l~~~~~~~~i~~~~~~~~~~~~~~~l~~h~~~v~~~~fs~d~~~l~s~s~D~tiriwd  231 (456)
T KOG0266|consen  156 GHECPSVTCVDFSPDGR----ALAAASSDGLIRIWKLEGIKSNLLRELSGHTRGVSDVAFSPDGSYLLSGSDDKTLRIWD  231 (456)
T ss_pred             ccccCceEEEEEcCCCC----eEEEccCCCcEEEeecccccchhhccccccccceeeeEECCCCcEEEEecCCceEEEee
Confidence            45588999999999886    59999999999999987766  6677789999999999999999999999999999999


Q ss_pred             C-CCCceeEEeeCCcccEEEEEECCCCCeEEEEecCCCeEEEEecCCcceeeeecCCCCCCCCCCccCCCCcceEEEEEC
Q 021247           89 V-DTNASIATLEASPSEVWQMQFDPKGTTLAVAGGGSASVKLWDTATWNLIATLSIPRPEGLKPTDKSSSKKFVLSVAWS  167 (315)
Q Consensus        89 ~-~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~  167 (315)
                      + ..+..+.++.+|...|.+++|+|++ .++++|+.|++|++||++++++...+.             .|...|++++|+
T Consensus       232 ~~~~~~~~~~l~gH~~~v~~~~f~p~g-~~i~Sgs~D~tvriWd~~~~~~~~~l~-------------~hs~~is~~~f~  297 (456)
T KOG0266|consen  232 LKDDGRNLKTLKGHSTYVTSVAFSPDG-NLLVSGSDDGTVRIWDVRTGECVRKLK-------------GHSDGISGLAFS  297 (456)
T ss_pred             ccCCCeEEEEecCCCCceEEEEecCCC-CEEEEecCCCcEEEEeccCCeEEEeee-------------ccCCceEEEEEC
Confidence            9 4557889999999999999999999 577899999999999999988887774             355569999999


Q ss_pred             CCCCEEEEecCCCcEEEEEcccce--eeeeecCCccc--eEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCeeEEEeeccc
Q 021247          168 PDGRRIACGSMDGTISVFDVTRAK--FLHHLEGHFMP--VRSLVYSPVDPRVLFSASDDTHVHMYDAEGKSLVTAMSGHA  243 (315)
Q Consensus       168 ~~~~~l~~~s~dg~i~i~d~~~~~--~~~~~~~~~~~--v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~  243 (315)
                      +++++|++++.|+.|++||+.++.  +...+..+..+  ++.+.|+| ++.+++++..|+.+++||+.....+..+.+|.
T Consensus       298 ~d~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~fsp-~~~~ll~~~~d~~~~~w~l~~~~~~~~~~~~~  376 (456)
T KOG0266|consen  298 PDGNLLVSASYDGTIRVWDLETGSKLCLKLLSGAENSAPVTSVQFSP-NGKYLLSASLDRTLKLWDLRSGKSVGTYTGHS  376 (456)
T ss_pred             CCCCEEEEcCCCccEEEEECCCCceeeeecccCCCCCCceeEEEECC-CCcEEEEecCCCeEEEEEccCCcceeeecccC
Confidence            999999999999999999999998  45666666554  99999998 78899999999999999999999998888887


Q ss_pred             cc---EEEEEEcCCCCeEEEEeCCCcEEEEecCccceehccccc-ccceEEEEEeeCCCEEEEEe--CCCcEEEeecC
Q 021247          244 SW---VLSVDASPDGAAITTGSSDRTVKLWDLNMRAAMQSMTNH-TDQVWGVSFRPLGGRVVSVS--DDKSISLYEYS  315 (315)
Q Consensus       244 ~~---i~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~-~~~v~~~~~s~~~~~l~s~~--~d~~i~i~~~~  315 (315)
                      ..   +.+...++.++++++|+.|+.|++|++.++..+..+.+| ...+..+.++|..+++++.+  .|+.+++|.+.
T Consensus       377 ~~~~~~~~~~~~~~~~~i~sg~~d~~v~~~~~~s~~~~~~l~~h~~~~~~~~~~~~~~~~~~s~s~~~d~~~~~w~~~  454 (456)
T KOG0266|consen  377 NLVRCIFSPTLSTGGKLIYSGSEDGSVYVWDSSSGGILQRLEGHSKAAVSDLSSHPTENLIASSSFEGDGLIRLWKYD  454 (456)
T ss_pred             CcceeEecccccCCCCeEEEEeCCceEEEEeCCccchhhhhcCCCCCceeccccCCCcCeeeecCcCCCceEEEecCC
Confidence            64   444556778999999999999999999999999999999 88899999999999999988  79999999863

>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto

Probab=100.00  E-value=4e-40  Score=270.75  Aligned_cols=286  Identities=35%  Similarity=0.550  Sum_probs=253.2

Q ss_pred             hhhccccceEEEEEeecCCCCCcEEEEeeCCCcEEEEcCCCCcceeeccccccceEEEEeCCCCCEEEEeeCCCeEEEEE
Q 021247            9 VENAHEESVWAVTWVPATETRPALLLTGSLDETVKLWRPDDMQLERTNTGHCLGVVSVAAHPSGIIAASASLDSFVRVFD   88 (315)
Q Consensus         9 ~~~~h~~~v~~v~~~~~~~~~~~~l~sgs~d~~v~~w~~~~~~~~~~~~~h~~~v~~~~~~~~g~~l~s~~~d~~i~~w~   88 (315)
                      ...+|.++|++++|+|.++    ++++++.||.|++|+..+.+.......|...+..+.++|++.++++++.|+.|++|+
T Consensus         4 ~~~~h~~~i~~~~~~~~~~----~l~~~~~~g~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~~   79 (289)
T cd00200           4 TLKGHTGGVTCVAFSPDGK----LLATGSGDGTIKVWDLETGELLRTLKGHTGPVRDVAASADGTYLASGSSDKTIRLWD   79 (289)
T ss_pred             HhcccCCCEEEEEEcCCCC----EEEEeecCcEEEEEEeeCCCcEEEEecCCcceeEEEECCCCCEEEEEcCCCeEEEEE
Confidence            3458999999999999754    799999999999999988777777788999999999999999999999999999999


Q ss_pred             CCCCceeEEeeCCcccEEEEEECCCCCeEEEEecCCCeEEEEecCCcceeeeecCCCCCCCCCCccCCCCcceEEEEECC
Q 021247           89 VDTNASIATLEASPSEVWQMQFDPKGTTLAVAGGGSASVKLWDTATWNLIATLSIPRPEGLKPTDKSSSKKFVLSVAWSP  168 (315)
Q Consensus        89 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~  168 (315)
                      +.+++.+..+..+...+.++.|+|++. ++++++.++.+.+||+++.+....+.             .+...+.+++|+|
T Consensus        80 ~~~~~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~~~~~i~~~~~~~~~~~~~~~-------------~~~~~i~~~~~~~  145 (289)
T cd00200          80 LETGECVRTLTGHTSYVSSVAFSPDGR-ILSSSSRDKTIKVWDVETGKCLTTLR-------------GHTDWVNSVAFSP  145 (289)
T ss_pred             cCcccceEEEeccCCcEEEEEEcCCCC-EEEEecCCCeEEEEECCCcEEEEEec-------------cCCCcEEEEEEcC
Confidence            998888888888888999999999865 55666679999999998766655543             2334589999999


Q ss_pred             CCCEEEEecCCCcEEEEEcccceeeeeecCCccceEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCeeEEEeecccccEEE
Q 021247          169 DGRRIACGSMDGTISVFDVTRAKFLHHLEGHFMPVRSLVYSPVDPRVLFSASDDTHVHMYDAEGKSLVTAMSGHASWVLS  248 (315)
Q Consensus       169 ~~~~l~~~s~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~i~~  248 (315)
                      ++.++++++.++.+++||+++++....+..|...+.++.|+| +++.+++++.|+.+++||.+.++.+..+..|...+.+
T Consensus       146 ~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~  224 (289)
T cd00200         146 DGTFVASSSQDGTIKLWDLRTGKCVATLTGHTGEVNSVAFSP-DGEKLLSSSSDGTIKLWDLSTGKCLGTLRGHENGVNS  224 (289)
T ss_pred             cCCEEEEEcCCCcEEEEEccccccceeEecCccccceEEECC-CcCEEEEecCCCcEEEEECCCCceecchhhcCCceEE
Confidence            988999888899999999998888888888988999999998 5567888888999999999988888888788889999


Q ss_pred             EEEcCCCCeEEEEeCCCcEEEEecCccceehcccccccceEEEEEeeCCCEEEEEeCCCcEEEee
Q 021247          249 VDASPDGAAITTGSSDRTVKLWDLNMRAAMQSMTNHTDQVWGVSFRPLGGRVVSVSDDKSISLYE  313 (315)
Q Consensus       249 ~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~i~i~~  313 (315)
                      +.++|++.++++++.|+.|++|++..++....+..|...+.++.|+|++++|++++.|+.|++|+
T Consensus       225 ~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iw~  289 (289)
T cd00200         225 VAFSPDGYLLASGSEDGTIRVWDLRTGECVQTLSGHTNSVTSLAWSPDGKRLASGSADGTIRIWD  289 (289)
T ss_pred             EEEcCCCcEEEEEcCCCcEEEEEcCCceeEEEccccCCcEEEEEECCCCCEEEEecCCCeEEecC
Confidence            99999988888888899999999998888888888989999999999999999999999999996

>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]

Probab=100.00  E-value=1.9e-41  Score=273.28  Aligned_cols=285  Identities=27%  Similarity=0.463  Sum_probs=246.0

Q ss_pred             hhhccccceEEEEEeecCCCCCcEEEEeeCCCcEEEEcCCC--Cccee-----e-c--cc----cccceEEEEeCCCCCE
Q 021247            9 VENAHEESVWAVTWVPATETRPALLLTGSLDETVKLWRPDD--MQLER-----T-N--TG----HCLGVVSVAAHPSGII   74 (315)
Q Consensus         9 ~~~~h~~~v~~v~~~~~~~~~~~~l~sgs~d~~v~~w~~~~--~~~~~-----~-~--~~----h~~~v~~~~~~~~g~~   74 (315)
                      +++ |+.+|++.+|.|...   .++++|+.|-+.++|++..  .....     . +  .+    ....|++++|+.+|..
T Consensus       174 vl~-~~~~V~~~~WnP~~~---~llasg~~~s~ari~~l~e~~~~~~~q~~lrh~~~~~~~s~~~nkdVT~L~Wn~~G~~  249 (524)
T KOG0273|consen  174 VLR-HESEVFICAWNPLRD---GLLASGSGDSTARIWNLLENSNIGSTQLVLRHCIREGGKSVPSNKDVTSLDWNNDGTL  249 (524)
T ss_pred             ecc-CCCceEEEecCchhh---hhhhccCCccceeeeeehhhccccchhhhhhhhhhhhcccCCccCCcceEEecCCCCe
Confidence            344 999999999999654   3799999999999998753  11111     0 0  11    2357999999999999


Q ss_pred             EEEeeCCCeEEEEECCCCceeEEeeCCcccEEEEEECCCCCeEEEEecCCCeEEEEecCCcceeeeecCCCCCCCCCCcc
Q 021247           75 AASASLDSFVRVFDVDTNASIATLEASPSEVWQMQFDPKGTTLAVAGGGSASVKLWDTATWNLIATLSIPRPEGLKPTDK  154 (315)
Q Consensus        75 l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~  154 (315)
                      |++|+.||.+|+|+.. +..+.++..|.++|.++.|+..|+++ ++++.|+++.+||..++.....+.+...+       
T Consensus       250 LatG~~~G~~riw~~~-G~l~~tl~~HkgPI~slKWnk~G~yi-lS~~vD~ttilwd~~~g~~~q~f~~~s~~-------  320 (524)
T KOG0273|consen  250 LATGSEDGEARIWNKD-GNLISTLGQHKGPIFSLKWNKKGTYI-LSGGVDGTTILWDAHTGTVKQQFEFHSAP-------  320 (524)
T ss_pred             EEEeecCcEEEEEecC-chhhhhhhccCCceEEEEEcCCCCEE-EeccCCccEEEEeccCceEEEeeeeccCC-------
Confidence            9999999999999975 55677888999999999999999976 57889999999999888877766554332       


Q ss_pred             CCCCcceEEEEECCCCCEEEEecCCCcEEEEEcccceeeeeecCCccceEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCe
Q 021247          155 SSSKKFVLSVAWSPDGRRIACGSMDGTISVFDVTRAKFLHHLEGHFMPVRSLVYSPVDPRVLFSASDDTHVHMYDAEGKS  234 (315)
Q Consensus       155 ~~~~~~i~~~~~~~~~~~l~~~s~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~  234 (315)
                            -..+.|-. ...|++++.|+.|+++.+...++..++.+|.++|.++.|.| .+.+|+++++|+++++|.+....
T Consensus       321 ------~lDVdW~~-~~~F~ts~td~~i~V~kv~~~~P~~t~~GH~g~V~alk~n~-tg~LLaS~SdD~TlkiWs~~~~~  392 (524)
T KOG0273|consen  321 ------ALDVDWQS-NDEFATSSTDGCIHVCKVGEDRPVKTFIGHHGEVNALKWNP-TGSLLASCSDDGTLKIWSMGQSN  392 (524)
T ss_pred             ------ccceEEec-CceEeecCCCceEEEEEecCCCcceeeecccCceEEEEECC-CCceEEEecCCCeeEeeecCCCc
Confidence                  23456643 45789999999999999999999999999999999999998 57899999999999999999888


Q ss_pred             eEEEeecccccEEEEEEcCCC---------CeEEEEeCCCcEEEEecCccceehcccccccceEEEEEeeCCCEEEEEeC
Q 021247          235 LVTAMSGHASWVLSVDASPDG---------AAITTGSSDRTVKLWDLNMRAAMQSMTNHTDQVWGVSFRPLGGRVVSVSD  305 (315)
Q Consensus       235 ~~~~~~~~~~~i~~~~~~~~~---------~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~  305 (315)
                      ....+..|+..|..+.|+|.|         ..+++++.|++|++||+..+.+++++..|.++|.+|+|||+|+++|+|+.
T Consensus       393 ~~~~l~~Hskei~t~~wsp~g~v~~n~~~~~~l~sas~dstV~lwdv~~gv~i~~f~kH~~pVysvafS~~g~ylAsGs~  472 (524)
T KOG0273|consen  393 SVHDLQAHSKEIYTIKWSPTGPVTSNPNMNLMLASASFDSTVKLWDVESGVPIHTLMKHQEPVYSVAFSPNGRYLASGSL  472 (524)
T ss_pred             chhhhhhhccceeeEeecCCCCccCCCcCCceEEEeecCCeEEEEEccCCceeEeeccCCCceEEEEecCCCcEEEecCC
Confidence            888999999999999999964         48899999999999999999999999999999999999999999999999


Q ss_pred             CCcEEEeec
Q 021247          306 DKSISLYEY  314 (315)
Q Consensus       306 d~~i~i~~~  314 (315)
                      ||.|.||+.
T Consensus       473 dg~V~iws~  481 (524)
T KOG0273|consen  473 DGCVHIWST  481 (524)
T ss_pred             CCeeEeccc
Confidence            999999974

>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]

Probab=100.00  E-value=2.2e-41  Score=264.48  Aligned_cols=287  Identities=26%  Similarity=0.420  Sum_probs=256.5

Q ss_pred             hhhhhhccccceEEEEEeecCCCCCcEEEEeeCCCcEEEEcCCCCcceeeccccccceEEEEeCCCCCEEEEeeCCCeEE
Q 021247            6 LKSVENAHEESVWAVTWVPATETRPALLLTGSLDETVKLWRPDDMQLERTNTGHCLGVVSVAAHPSGIIAASASLDSFVR   85 (315)
Q Consensus         6 ~~~~~~~h~~~v~~v~~~~~~~~~~~~l~sgs~d~~v~~w~~~~~~~~~~~~~h~~~v~~~~~~~~g~~l~s~~~d~~i~   85 (315)
                      +..|..+|.+.|-||++-|..    ..|+|||.|++++|||++++++.-.+.||...|..+++++-..++.+++.|+.|+
T Consensus       143 l~rVi~gHlgWVr~vavdP~n----~wf~tgs~DrtikIwDlatg~LkltltGhi~~vr~vavS~rHpYlFs~gedk~VK  218 (460)
T KOG0285|consen  143 LYRVISGHLGWVRSVAVDPGN----EWFATGSADRTIKIWDLATGQLKLTLTGHIETVRGVAVSKRHPYLFSAGEDKQVK  218 (460)
T ss_pred             ehhhhhhccceEEEEeeCCCc----eeEEecCCCceeEEEEcccCeEEEeecchhheeeeeeecccCceEEEecCCCeeE
Confidence            345788999999999998853    3799999999999999999999999999999999999999999999999999999


Q ss_pred             EEECCCCceeEEeeCCcccEEEEEECCCCCeEEEEecCCCeEEEEecCCcceeeeecCCCCCCCCCCccCCCCcceEEEE
Q 021247           86 VFDVDTNASIATLEASPSEVWQMQFDPKGTTLAVAGGGSASVKLWDTATWNLIATLSIPRPEGLKPTDKSSSKKFVLSVA  165 (315)
Q Consensus        86 ~w~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~  165 (315)
                      -||++.++.++.+-+|-..|.+++.+|.-. ++++|+.|.++++||+|+...+..+.             +|...|..+.
T Consensus       219 CwDLe~nkvIR~YhGHlS~V~~L~lhPTld-vl~t~grDst~RvWDiRtr~~V~~l~-------------GH~~~V~~V~  284 (460)
T KOG0285|consen  219 CWDLEYNKVIRHYHGHLSGVYCLDLHPTLD-VLVTGGRDSTIRVWDIRTRASVHVLS-------------GHTNPVASVM  284 (460)
T ss_pred             EEechhhhhHHHhccccceeEEEeccccce-eEEecCCcceEEEeeecccceEEEec-------------CCCCcceeEE
Confidence            999999999999999999999999999865 66899999999999999877666653             4566688999


Q ss_pred             ECCCCCEEEEecCCCcEEEEEcccceeeeeecCCccceEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCeeEEEeeccccc
Q 021247          166 WSPDGRRIACGSMDGTISVFDVTRAKFLHHLEGHFMPVRSLVYSPVDPRVLFSASDDTHVHMYDAEGKSLVTAMSGHASW  245 (315)
Q Consensus       166 ~~~~~~~l~~~s~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~  245 (315)
                      +.|-...+++|+.|++|++||++.++....+..|+..+++++.+| ....+++++.|. |+-|++..+..+..+.+|..-
T Consensus       285 ~~~~dpqvit~S~D~tvrlWDl~agkt~~tlt~hkksvral~lhP-~e~~fASas~dn-ik~w~~p~g~f~~nlsgh~~i  362 (460)
T KOG0285|consen  285 CQPTDPQVITGSHDSTVRLWDLRAGKTMITLTHHKKSVRALCLHP-KENLFASASPDN-IKQWKLPEGEFLQNLSGHNAI  362 (460)
T ss_pred             eecCCCceEEecCCceEEEeeeccCceeEeeecccceeeEEecCC-chhhhhccCCcc-ceeccCCccchhhccccccce
Confidence            998888999999999999999999999999999999999999998 556778887774 899999999888889999999


Q ss_pred             EEEEEEcCCCCeEEEEeCCCcEEEEecCccceehcccc--------cccceEEEEEeeCCCEEEEEeCCCcEEEee
Q 021247          246 VLSVDASPDGAAITTGSSDRTVKLWDLNMRAAMQSMTN--------HTDQVWGVSFRPLGGRVVSVSDDKSISLYE  313 (315)
Q Consensus       246 i~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~--------~~~~v~~~~~s~~~~~l~s~~~d~~i~i~~  313 (315)
                      |+.++.+.|+ ++++|+.+|.+.+||.+++...+....        -+..|.+.+|...|.+|+++..|++|++|+
T Consensus       363 intl~~nsD~-v~~~G~dng~~~fwdwksg~nyQ~~~t~vqpGSl~sEagI~as~fDktg~rlit~eadKtIk~~k  437 (460)
T KOG0285|consen  363 INTLSVNSDG-VLVSGGDNGSIMFWDWKSGHNYQRGQTIVQPGSLESEAGIFASCFDKTGSRLITGEADKTIKMYK  437 (460)
T ss_pred             eeeeeeccCc-eEEEcCCceEEEEEecCcCcccccccccccCCccccccceeEEeecccCceEEeccCCcceEEEe
Confidence            9999998876 689999999999999998866554321        234688999999999999999999999997

>KOG0282 consensus mRNA splicing factor [Function unknown]

Probab=100.00  E-value=9.4e-43  Score=281.58  Aligned_cols=287  Identities=23%  Similarity=0.442  Sum_probs=245.7

Q ss_pred             hhhccccceEEEEEeecCCCCCcEEEEeeCCCcEEEEcCCC-CcceeeccccccceEEEEeCCCCCEEEEeeCCCeEEEE
Q 021247            9 VENAHEESVWAVTWVPATETRPALLLTGSLDETVKLWRPDD-MQLERTNTGHCLGVVSVAAHPSGIIAASASLDSFVRVF   87 (315)
Q Consensus         9 ~~~~h~~~v~~v~~~~~~~~~~~~l~sgs~d~~v~~w~~~~-~~~~~~~~~h~~~v~~~~~~~~g~~l~s~~~d~~i~~w   87 (315)
                      ...+|+..|+++.|.|..-.   +|++|+.|+.|+||+... +.+.+.+.+|..+|..++|+++|..++|++.|+++++|
T Consensus       209 ~~~gH~kgvsai~~fp~~~h---LlLS~gmD~~vklW~vy~~~~~lrtf~gH~k~Vrd~~~s~~g~~fLS~sfD~~lKlw  285 (503)
T KOG0282|consen  209 NLSGHTKGVSAIQWFPKKGH---LLLSGGMDGLVKLWNVYDDRRCLRTFKGHRKPVRDASFNNCGTSFLSASFDRFLKLW  285 (503)
T ss_pred             eccCCccccchhhhccceee---EEEecCCCceEEEEEEecCcceehhhhcchhhhhhhhccccCCeeeeeecceeeeee
Confidence            35799999999999995433   899999999999999765 78899999999999999999999999999999999999


Q ss_pred             ECCCCceeEEeeCCcccEEEEEECCCCCeEEEEecCCCeEEEEecCCcceeeeecCCCCCCCCCCccCCCCcceEEEEEC
Q 021247           88 DVDTNASIATLEASPSEVWQMQFDPKGTTLAVAGGGSASVKLWDTATWNLIATLSIPRPEGLKPTDKSSSKKFVLSVAWS  167 (315)
Q Consensus        88 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~  167 (315)
                      |+++|+++..+.. ...+.++.|+|++..++++|+.|+.|+.||+|+++.+..+.             .|...|..+.|-
T Consensus       286 DtETG~~~~~f~~-~~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~kvvqeYd-------------~hLg~i~~i~F~  351 (503)
T KOG0282|consen  286 DTETGQVLSRFHL-DKVPTCVKFHPDNQNIFLVGGSDKKIRQWDIRSGKVVQEYD-------------RHLGAILDITFV  351 (503)
T ss_pred             ccccceEEEEEec-CCCceeeecCCCCCcEEEEecCCCcEEEEeccchHHHHHHH-------------hhhhheeeeEEc
Confidence            9999999888764 35678999999997888999999999999999988776553             344558999999


Q ss_pred             CCCCEEEEecCCCcEEEEEcccceeeeeec-CCccceEEEEEcCCCCcEEEEEeCCCeEEEEeCCCC---eeEEEeecc-
Q 021247          168 PDGRRIACGSMDGTISVFDVTRAKFLHHLE-GHFMPVRSLVYSPVDPRVLFSASDDTHVHMYDAEGK---SLVTAMSGH-  242 (315)
Q Consensus       168 ~~~~~l~~~s~dg~i~i~d~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~---~~~~~~~~~-  242 (315)
                      ++|+++++.+.|+.+++|+.+.+-.+.... .+.-...++..+| ++.+++.=+.|+.|.+|.....   ...+.+.+| 
T Consensus       352 ~~g~rFissSDdks~riWe~~~~v~ik~i~~~~~hsmP~~~~~P-~~~~~~aQs~dN~i~ifs~~~~~r~nkkK~feGh~  430 (503)
T KOG0282|consen  352 DEGRRFISSSDDKSVRIWENRIPVPIKNIADPEMHTMPCLTLHP-NGKWFAAQSMDNYIAIFSTVPPFRLNKKKRFEGHS  430 (503)
T ss_pred             cCCceEeeeccCccEEEEEcCCCccchhhcchhhccCcceecCC-CCCeehhhccCceEEEEecccccccCHhhhhccee
Confidence            999999999999999999988776543322 2222445778888 6678999999999999986543   223445677 


Q ss_pred             -cccEEEEEEcCCCCeEEEEeCCCcEEEEecCccceehcccccccceEEEEEeeC-CCEEEEEeCCCcEEEee
Q 021247          243 -ASWVLSVDASPDGAAITTGSSDRTVKLWDLNMRAAMQSMTNHTDQVWGVSFRPL-GGRVVSVSDDKSISLYE  313 (315)
Q Consensus       243 -~~~i~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~-~~~l~s~~~d~~i~i~~  313 (315)
                       .+.-..+.|||||++|++|+.||.+.+||.++.+.+..+..|.+.+..+.|+|. ...||++|.||.|++|+
T Consensus       431 vaGys~~v~fSpDG~~l~SGdsdG~v~~wdwkt~kl~~~lkah~~~ci~v~wHP~e~Skvat~~w~G~Ikiwd  503 (503)
T KOG0282|consen  431 VAGYSCQVDFSPDGRTLCSGDSDGKVNFWDWKTTKLVSKLKAHDQPCIGVDWHPVEPSKVATCGWDGLIKIWD  503 (503)
T ss_pred             ccCceeeEEEcCCCCeEEeecCCccEEEeechhhhhhhccccCCcceEEEEecCCCcceeEecccCceeEecC
Confidence             456778999999999999999999999999999999999999999999999997 45799999999999996

>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=100.00  E-value=7.4e-41  Score=283.06  Aligned_cols=294  Identities=22%  Similarity=0.350  Sum_probs=257.4

Q ss_pred             hhccccceEEEEEeecCCCCCcEEEEeeCCCcEEEEcCCCCcceeeccccccceEEEEeCCCCCEEEEeeCCCeEEEEEC
Q 021247           10 ENAHEESVWAVTWVPATETRPALLLTGSLDETVKLWRPDDMQLERTNTGHCLGVVSVAAHPSGIIAASASLDSFVRVFDV   89 (315)
Q Consensus        10 ~~~h~~~v~~v~~~~~~~~~~~~l~sgs~d~~v~~w~~~~~~~~~~~~~h~~~v~~~~~~~~g~~l~s~~~d~~i~~w~~   89 (315)
                      .-|..++|..+.|.-..   ...++.++..+.+++|+..+..+. .+.||+..|.++....+|.+|+|++.|.++++|.+
T Consensus       319 ivG~ndEI~Dm~~lG~e---~~~laVATNs~~lr~y~~~~~~c~-ii~GH~e~vlSL~~~~~g~llat~sKD~svilWr~  394 (775)
T KOG0319|consen  319 IVGYNDEILDMKFLGPE---ESHLAVATNSPELRLYTLPTSYCQ-IIPGHTEAVLSLDVWSSGDLLATGSKDKSVILWRL  394 (775)
T ss_pred             hcCCchhheeeeecCCc---cceEEEEeCCCceEEEecCCCceE-EEeCchhheeeeeecccCcEEEEecCCceEEEEEe
Confidence            34667899999987533   247999999999999988877765 78899999999998888999999999999999998


Q ss_pred             CCCc----eeEEeeCCcccEEEEEECCCCCeEEEEecCCCeEEEEecCCcceeeeecCCCCCCC-CCCccCCCCcceEEE
Q 021247           90 DTNA----SIATLEASPSEVWQMQFDPKGTTLAVAGGGSASVKLWDTATWNLIATLSIPRPEGL-KPTDKSSSKKFVLSV  164 (315)
Q Consensus        90 ~~~~----~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~i~~~  164 (315)
                      +++.    ++....+|.+.|.+++++..+..++++++.|+++++|++...+....     +..+ .......|..-|+++
T Consensus       395 ~~~~~~~~~~a~~~gH~~svgava~~~~~asffvsvS~D~tlK~W~l~~s~~~~~-----~~~~~~~~t~~aHdKdIN~V  469 (775)
T KOG0319|consen  395 NNNCSKSLCVAQANGHTNSVGAVAGSKLGASFFVSVSQDCTLKLWDLPKSKETAF-----PIVLTCRYTERAHDKDINCV  469 (775)
T ss_pred             cCCcchhhhhhhhcccccccceeeecccCccEEEEecCCceEEEecCCCcccccc-----cceehhhHHHHhhcccccce
Confidence            6553    34455778899999999888888999999999999999976322211     0000 001123455669999


Q ss_pred             EECCCCCEEEEecCCCcEEEEEcccceeeeeecCCccceEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCeeEEEeecccc
Q 021247          165 AWSPDGRRIACGSMDGTISVFDVTRAKFLHHLEGHFMPVRSLVYSPVDPRVLFSASDDTHVHMYDAEGKSLVTAMSGHAS  244 (315)
Q Consensus       165 ~~~~~~~~l~~~s~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~  244 (315)
                      +++|+...+++||+|.+.++|+++.++....+.+|...+.++.|+| .++++++++.|.+|+||.+.+.++++++.||..
T Consensus       470 aia~ndkLiAT~SqDktaKiW~le~~~l~~vLsGH~RGvw~V~Fs~-~dq~laT~SgD~TvKIW~is~fSClkT~eGH~~  548 (775)
T KOG0319|consen  470 AIAPNDKLIATGSQDKTAKIWDLEQLRLLGVLSGHTRGVWCVSFSK-NDQLLATCSGDKTVKIWSISTFSCLKTFEGHTS  548 (775)
T ss_pred             EecCCCceEEecccccceeeecccCceEEEEeeCCccceEEEEecc-ccceeEeccCCceEEEEEeccceeeeeecCccc
Confidence            9999999999999999999999999999999999999999999998 678999999999999999999999999999999


Q ss_pred             cEEEEEEcCCCCeEEEEeCCCcEEEEecCccceehcccccccceEEEEEeeCCCEEEEEeCCCcEEEee
Q 021247          245 WVLSVDASPDGAAITTGSSDRTVKLWDLNMRAAMQSMTNHTDQVWGVSFRPLGGRVVSVSDDKSISLYE  313 (315)
Q Consensus       245 ~i~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~i~i~~  313 (315)
                      .|..+.|-.++..|++++.||-|++|++++.+++.++..|++.||+++-+|+..++++|+.||.|.+|.
T Consensus       549 aVlra~F~~~~~qliS~~adGliKlWnikt~eC~~tlD~H~DrvWaL~~~~~~~~~~tgg~Dg~i~~wk  617 (775)
T KOG0319|consen  549 AVLRASFIRNGKQLISAGADGLIKLWNIKTNECEMTLDAHNDRVWALSVSPLLDMFVTGGGDGRIIFWK  617 (775)
T ss_pred             eeEeeeeeeCCcEEEeccCCCcEEEEeccchhhhhhhhhccceeEEEeecCccceeEecCCCeEEEEee
Confidence            999999999999999999999999999999999999999999999999999999999999999999995

>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]

Probab=100.00  E-value=5.6e-39  Score=262.28  Aligned_cols=300  Identities=25%  Similarity=0.379  Sum_probs=250.5

Q ss_pred             hccccceEEEEEeecCCCCCcEEEEeeCCCcEEEEcCCCCcceeeccccccceEEEEeCCCCCEEEEeeCCCeEEEEECC
Q 021247           11 NAHEESVWAVTWVPATETRPALLLTGSLDETVKLWRPDDMQLERTNTGHCLGVVSVAAHPSGIIAASASLDSFVRVFDVD   90 (315)
Q Consensus        11 ~~h~~~v~~v~~~~~~~~~~~~l~sgs~d~~v~~w~~~~~~~~~~~~~h~~~v~~~~~~~~g~~l~s~~~d~~i~~w~~~   90 (315)
                      .+|...|+++.|-|..   +-.++|||.|++|-+|+-...++......|...|+++.++|||.++++++.||++.+||-.
T Consensus       144 ~GhSr~ins~~~KpsR---PfRi~T~sdDn~v~ffeGPPFKFk~s~r~HskFV~~VRysPDG~~Fat~gsDgki~iyDGk  220 (603)
T KOG0318|consen  144 TGHSRRINSVDFKPSR---PFRIATGSDDNTVAFFEGPPFKFKSSFREHSKFVNCVRYSPDGSRFATAGSDGKIYIYDGK  220 (603)
T ss_pred             eccceeEeeeeccCCC---ceEEEeccCCCeEEEeeCCCeeeeecccccccceeeEEECCCCCeEEEecCCccEEEEcCC
Confidence            5999999999999864   4579999999999999877777777888999999999999999999999999999999999


Q ss_pred             CCceeEEee---CCcccEEEEEECCCCCeEEEEecCCCeEEEEecCCcceeeeecCCCC---------------------
Q 021247           91 TNASIATLE---ASPSEVWQMQFDPKGTTLAVAGGGSASVKLWDTATWNLIATLSIPRP---------------------  146 (315)
Q Consensus        91 ~~~~~~~~~---~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~---------------------  146 (315)
                      +++.+..+.   .|.+.|..++|+|++..+ ++.+.|.++++||..+.+++.++.....                     
T Consensus       221 tge~vg~l~~~~aHkGsIfalsWsPDs~~~-~T~SaDkt~KIWdVs~~slv~t~~~~~~v~dqqvG~lWqkd~lItVSl~  299 (603)
T KOG0318|consen  221 TGEKVGELEDSDAHKGSIFALSWSPDSTQF-LTVSADKTIKIWDVSTNSLVSTWPMGSTVEDQQVGCLWQKDHLITVSLS  299 (603)
T ss_pred             CccEEEEecCCCCccccEEEEEECCCCceE-EEecCCceEEEEEeeccceEEEeecCCchhceEEEEEEeCCeEEEEEcC
Confidence            999988887   788999999999999976 5778999999999998887777654332                     


Q ss_pred             ---------CCCCCCccCCCCcceEEEEECCCCCEEEEecCCCcEEEEEcccceee-----------eeec---------
Q 021247          147 ---------EGLKPTDKSSSKKFVLSVAWSPDGRRIACGSMDGTISVFDVTRAKFL-----------HHLE---------  197 (315)
Q Consensus       147 ---------~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~s~dg~i~i~d~~~~~~~-----------~~~~---------  197 (315)
                               ....+....+|...|+++..+|++.+|++|+.||.|.-||..++..-           ..+.         
T Consensus       300 G~in~ln~~d~~~~~~i~GHnK~ITaLtv~~d~~~i~SgsyDG~I~~W~~~~g~~~~~~g~~h~nqI~~~~~~~~~~~~t  379 (603)
T KOG0318|consen  300 GTINYLNPSDPSVLKVISGHNKSITALTVSPDGKTIYSGSYDGHINSWDSGSGTSDRLAGKGHTNQIKGMAASESGELFT  379 (603)
T ss_pred             cEEEEecccCCChhheecccccceeEEEEcCCCCEEEeeccCceEEEEecCCccccccccccccceEEEEeecCCCcEEE
Confidence                     01122334678888999999999999999999999999997543211           0000         


Q ss_pred             ------------------CC-------------------------------------------ccceEEEEEcCCCCcEE
Q 021247          198 ------------------GH-------------------------------------------FMPVRSLVYSPVDPRVL  216 (315)
Q Consensus       198 ------------------~~-------------------------------------------~~~v~~~~~~~~~~~~l  216 (315)
                                        .+                                           .....+++++| ++..+
T Consensus       380 ~g~Dd~l~~~~~~~~~~t~~~~~~lg~QP~~lav~~d~~~avv~~~~~iv~l~~~~~~~~~~~~y~~s~vAv~~-~~~~v  458 (603)
T KOG0318|consen  380 IGWDDTLRVISLKDNGYTKSEVVKLGSQPKGLAVLSDGGTAVVACISDIVLLQDQTKVSSIPIGYESSAVAVSP-DGSEV  458 (603)
T ss_pred             EecCCeEEEEecccCcccccceeecCCCceeEEEcCCCCEEEEEecCcEEEEecCCcceeeccccccceEEEcC-CCCEE
Confidence                              00                                           01124567777 67789


Q ss_pred             EEEeCCCeEEEEeCCCCeeEE--EeecccccEEEEEEcCCCCeEEEEeCCCcEEEEecCccce-ehcccccccceEEEEE
Q 021247          217 FSASDDTHVHMYDAEGKSLVT--AMSGHASWVLSVDASPDGAAITTGSSDRTVKLWDLNMRAA-MQSMTNHTDQVWGVSF  293 (315)
Q Consensus       217 ~s~~~d~~i~~wd~~~~~~~~--~~~~~~~~i~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~-~~~~~~~~~~v~~~~~  293 (315)
                      +.|+.|+++++|.+.+..+..  ....|.++|++++++|++.+||++...+.|.+||+.+++. ...+.-|+..|.+++|
T Consensus       459 aVGG~Dgkvhvysl~g~~l~ee~~~~~h~a~iT~vaySpd~~yla~~Da~rkvv~yd~~s~~~~~~~w~FHtakI~~~aW  538 (603)
T KOG0318|consen  459 AVGGQDGKVHVYSLSGDELKEEAKLLEHRAAITDVAYSPDGAYLAAGDASRKVVLYDVASREVKTNRWAFHTAKINCVAW  538 (603)
T ss_pred             EEecccceEEEEEecCCcccceeeeecccCCceEEEECCCCcEEEEeccCCcEEEEEcccCceecceeeeeeeeEEEEEe
Confidence            999999999999998765433  4567999999999999999999999999999999998765 3445669999999999


Q ss_pred             eeCCCEEEEEeCCCcEEEeecC
Q 021247          294 RPLGGRVVSVSDDKSISLYEYS  315 (315)
Q Consensus       294 s~~~~~l~s~~~d~~i~i~~~~  315 (315)
                      +|+..+||+|+.|..|.||++.
T Consensus       539 sP~n~~vATGSlDt~Viiysv~  560 (603)
T KOG0318|consen  539 SPNNKLVATGSLDTNVIIYSVK  560 (603)
T ss_pred             CCCceEEEeccccceEEEEEcc
Confidence            9999999999999999999863

>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]

Probab=100.00  E-value=7.6e-41  Score=285.22  Aligned_cols=270  Identities=23%  Similarity=0.409  Sum_probs=233.5

Q ss_pred             cceEEEEEeecCCCCCcEEEEeeCCCcEEEEcCCCCcceeeccccccceEEEEeCCCCCEEEEeeCCCeEEEEECCCCce
Q 021247           15 ESVWAVTWVPATETRPALLLTGSLDETVKLWRPDDMQLERTNTGHCLGVVSVAAHPSGIIAASASLDSFVRVFDVDTNAS   94 (315)
Q Consensus        15 ~~v~~v~~~~~~~~~~~~l~sgs~d~~v~~w~~~~~~~~~~~~~h~~~v~~~~~~~~g~~l~s~~~d~~i~~w~~~~~~~   94 (315)
                      ..|+|..|+++..    +||.|-.|..|++|.+...++.+ +++. .         +...+=+.+.|-.+.+.|-.....
T Consensus       379 ~~v~ca~fSddss----mlA~Gf~dS~i~~~Sl~p~kl~~-lk~~-~---------~l~~~d~~sad~~~~~~D~~~~~~  443 (707)
T KOG0263|consen  379 QGVTCAEFSDDSS----MLACGFVDSSVRVWSLTPKKLKK-LKDA-S---------DLSNIDTESADVDVDMLDDDSSGT  443 (707)
T ss_pred             CcceeEeecCCcc----hhhccccccEEEEEecchhhhcc-ccch-h---------hhccccccccchhhhhccccCCce
Confidence            4688888888664    78888899999999876554422 2211 1         111111234444466777777767


Q ss_pred             eEEeeCCcccEEEEEECCCCCeEEEEecCCCeEEEEecCCcceeeeecCCCCCCCCCCccCCCCcceEEEEECCCCCEEE
Q 021247           95 IATLEASPSEVWQMQFDPKGTTLAVAGGGSASVKLWDTATWNLIATLSIPRPEGLKPTDKSSSKKFVLSVAWSPDGRRIA  174 (315)
Q Consensus        95 ~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~  174 (315)
                      ..++-+|.++|..++|+|+.++ +++++.|+++|+|.+.+...+..+.             +|..+|..+.|+|.|.+||
T Consensus       444 ~~~L~GH~GPVyg~sFsPd~rf-LlScSED~svRLWsl~t~s~~V~y~-------------GH~~PVwdV~F~P~GyYFa  509 (707)
T KOG0263|consen  444 SRTLYGHSGPVYGCSFSPDRRF-LLSCSEDSSVRLWSLDTWSCLVIYK-------------GHLAPVWDVQFAPRGYYFA  509 (707)
T ss_pred             eEEeecCCCceeeeeecccccc-eeeccCCcceeeeecccceeEEEec-------------CCCcceeeEEecCCceEEE
Confidence            7778899999999999999875 5789999999999999987776663             4566799999999999999


Q ss_pred             EecCCCcEEEEEcccceeeeeecCCccceEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCeeEEEeecccccEEEEEEcCC
Q 021247          175 CGSMDGTISVFDVTRAKFLHHLEGHFMPVRSLVYSPVDPRVLFSASDDTHVHMYDAEGKSLVTAMSGHASWVLSVDASPD  254 (315)
Q Consensus       175 ~~s~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~i~~~~~~~~  254 (315)
                      +++.|++.++|......++..+.+|...|.|+.|+| +..++++|+.|.++++||..++..++.+.||.++|.+++++|.
T Consensus       510 tas~D~tArLWs~d~~~PlRifaghlsDV~cv~FHP-Ns~Y~aTGSsD~tVRlWDv~~G~~VRiF~GH~~~V~al~~Sp~  588 (707)
T KOG0263|consen  510 TASHDQTARLWSTDHNKPLRIFAGHLSDVDCVSFHP-NSNYVATGSSDRTVRLWDVSTGNSVRIFTGHKGPVTALAFSPC  588 (707)
T ss_pred             ecCCCceeeeeecccCCchhhhcccccccceEEECC-cccccccCCCCceEEEEEcCCCcEEEEecCCCCceEEEEEcCC
Confidence            999999999999999999999999999999999999 7889999999999999999999999999999999999999999


Q ss_pred             CCeEEEEeCCCcEEEEecCccceehcccccccceEEEEEeeCCCEEEEEeCCCcEEEeec
Q 021247          255 GAAITTGSSDRTVKLWDLNMRAAMQSMTNHTDQVWGVSFRPLGGRVVSVSDDKSISLYEY  314 (315)
Q Consensus       255 ~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~i~i~~~  314 (315)
                      |++|++|+.||.|.+||+..++.+.++.+|++.|.++.||++|..||++|.|.+|++||+
T Consensus       589 Gr~LaSg~ed~~I~iWDl~~~~~v~~l~~Ht~ti~SlsFS~dg~vLasgg~DnsV~lWD~  648 (707)
T KOG0263|consen  589 GRYLASGDEDGLIKIWDLANGSLVKQLKGHTGTIYSLSFSRDGNVLASGGADNSVRLWDL  648 (707)
T ss_pred             CceEeecccCCcEEEEEcCCCcchhhhhcccCceeEEEEecCCCEEEecCCCCeEEEEEc
Confidence            999999999999999999999999999999999999999999999999999999999997

>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]

Probab=100.00  E-value=8.3e-40  Score=247.72  Aligned_cols=244  Identities=27%  Similarity=0.392  Sum_probs=208.8

Q ss_pred             hhccccceEEEEEeecCCCCCcEEEEeeCCCcEEEEcCCCCcceeeccccccceEEEEeCCCCCEEEEeeCCCeEEEEEC
Q 021247           10 ENAHEESVWAVTWVPATETRPALLLTGSLDETVKLWRPDDMQLERTNTGHCLGVVSVAAHPSGIIAASASLDSFVRVFDV   89 (315)
Q Consensus        10 ~~~h~~~v~~v~~~~~~~~~~~~l~sgs~d~~v~~w~~~~~~~~~~~~~h~~~v~~~~~~~~g~~l~s~~~d~~i~~w~~   89 (315)
                      +.||+-.|..+.-+++++    +.+++|+|+++++||..+++..+.+.||...|.+++|+++..++++|+.|++|++||.
T Consensus        59 ~~GHsH~v~dv~~s~dg~----~alS~swD~~lrlWDl~~g~~t~~f~GH~~dVlsva~s~dn~qivSGSrDkTiklwnt  134 (315)
T KOG0279|consen   59 LTGHSHFVSDVVLSSDGN----FALSASWDGTLRLWDLATGESTRRFVGHTKDVLSVAFSTDNRQIVSGSRDKTIKLWNT  134 (315)
T ss_pred             eeccceEecceEEccCCc----eEEeccccceEEEEEecCCcEEEEEEecCCceEEEEecCCCceeecCCCcceeeeeee
Confidence            568999999999999886    7999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCceeEEeeCC-cccEEEEEECCCC-CeEEEEecCCCeEEEEecCCcceeeeecCCCCCCCCCCccCCCCcceEEEEEC
Q 021247           90 DTNASIATLEAS-PSEVWQMQFDPKG-TTLAVAGGGSASVKLWDTATWNLIATLSIPRPEGLKPTDKSSSKKFVLSVAWS  167 (315)
Q Consensus        90 ~~~~~~~~~~~~-~~~v~~~~~~~~~-~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~  167 (315)
                      .........+.. .+-|.+++|+|+. +.++++++.|+++++||+++.+....+             .+|..+++.++++
T Consensus       135 ~g~ck~t~~~~~~~~WVscvrfsP~~~~p~Ivs~s~DktvKvWnl~~~~l~~~~-------------~gh~~~v~t~~vS  201 (315)
T KOG0279|consen  135 LGVCKYTIHEDSHREWVSCVRFSPNESNPIIVSASWDKTVKVWNLRNCQLRTTF-------------IGHSGYVNTVTVS  201 (315)
T ss_pred             cccEEEEEecCCCcCcEEEEEEcCCCCCcEEEEccCCceEEEEccCCcchhhcc-------------ccccccEEEEEEC
Confidence            876655554444 7789999999985 567789999999999999987655444             2466789999999


Q ss_pred             CCCCEEEEecCCCcEEEEEcccceeeeeecCCccceEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCeeEEEeec------
Q 021247          168 PDGRRIACGSMDGTISVFDVTRAKFLHHLEGHFMPVRSLVYSPVDPRVLFSASDDTHVHMYDAEGKSLVTAMSG------  241 (315)
Q Consensus       168 ~~~~~l~~~s~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~------  241 (315)
                      |||..+++|+.||.+.+||++.++.++.+. |..+|.+++|+| +. +.+.+.-+..|+|||+..+..+..+..      
T Consensus       202 pDGslcasGgkdg~~~LwdL~~~k~lysl~-a~~~v~sl~fsp-nr-ywL~~at~~sIkIwdl~~~~~v~~l~~d~~g~s  278 (315)
T KOG0279|consen  202 PDGSLCASGGKDGEAMLWDLNEGKNLYSLE-AFDIVNSLCFSP-NR-YWLCAATATSIKIWDLESKAVVEELKLDGIGPS  278 (315)
T ss_pred             CCCCEEecCCCCceEEEEEccCCceeEecc-CCCeEeeEEecC-Cc-eeEeeccCCceEEEeccchhhhhhccccccccc
Confidence            999999999999999999999998877665 778999999999 43 455555566699999998876655431      


Q ss_pred             ---ccccEEEEEEcCCCCeEEEEeCCCcEEEEecC
Q 021247          242 ---HASWVLSVDASPDGAAITTGSSDRTVKLWDLN  273 (315)
Q Consensus       242 ---~~~~i~~~~~~~~~~~l~s~~~d~~i~iwd~~  273 (315)
                         ......+++|+++|+.|+.|-.|+.|++|.+.
T Consensus       279 ~~~~~~~clslaws~dG~tLf~g~td~~irv~qv~  313 (315)
T KOG0279|consen  279 SKAGDPICLSLAWSADGQTLFAGYTDNVIRVWQVA  313 (315)
T ss_pred             cccCCcEEEEEEEcCCCcEEEeeecCCcEEEEEee
Confidence               13345788999999999999999999999875

>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]

Probab=100.00  E-value=2.3e-39  Score=253.64  Aligned_cols=285  Identities=24%  Similarity=0.338  Sum_probs=241.1

Q ss_pred             hccccceEEEEEeecCCCCCcEEEEeeCCCcEEEEcCCCCcceeeccccccceEEEEeCCCCCEEEEeeCCCeEEEEECC
Q 021247           11 NAHEESVWAVTWVPATETRPALLLTGSLDETVKLWRPDDMQLERTNTGHCLGVVSVAAHPSGIIAASASLDSFVRVFDVD   90 (315)
Q Consensus        11 ~~h~~~v~~v~~~~~~~~~~~~l~sgs~d~~v~~w~~~~~~~~~~~~~h~~~v~~~~~~~~g~~l~s~~~d~~i~~w~~~   90 (315)
                      ..|+++|++|+-.|..    .+++||+.|..-.+|+..++.....+.+|+..|+++.|+.+|.+|++|+-+|.|+||+..
T Consensus        61 ~~H~~svFavsl~P~~----~l~aTGGgDD~AflW~~~~ge~~~eltgHKDSVt~~~FshdgtlLATGdmsG~v~v~~~s  136 (399)
T KOG0296|consen   61 DKHTDSVFAVSLHPNN----NLVATGGGDDLAFLWDISTGEFAGELTGHKDSVTCCSFSHDGTLLATGDMSGKVLVFKVS  136 (399)
T ss_pred             hhcCCceEEEEeCCCC----ceEEecCCCceEEEEEccCCcceeEecCCCCceEEEEEccCceEEEecCCCccEEEEEcc
Confidence            5899999999999932    489999999999999999999888999999999999999999999999999999999999


Q ss_pred             CCceeEEeeCCcccEEEEEECCCCCeEEEEecCCCeEEEEecCCcceeeeecCCCCCCCCCCccCCCCcceEEEEECCCC
Q 021247           91 TNASIATLEASPSEVWQMQFDPKGTTLAVAGGGSASVKLWDTATWNLIATLSIPRPEGLKPTDKSSSKKFVLSVAWSPDG  170 (315)
Q Consensus        91 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~  170 (315)
                      ++.....+...-+.+.-+.|||.+. ++++|+.||.+.+|.+.+....+.+.             +|...+++=.|.|+|
T Consensus       137 tg~~~~~~~~e~~dieWl~WHp~a~-illAG~~DGsvWmw~ip~~~~~kv~~-------------Gh~~~ct~G~f~pdG  202 (399)
T KOG0296|consen  137 TGGEQWKLDQEVEDIEWLKWHPRAH-ILLAGSTDGSVWMWQIPSQALCKVMS-------------GHNSPCTCGEFIPDG  202 (399)
T ss_pred             cCceEEEeecccCceEEEEeccccc-EEEeecCCCcEEEEECCCcceeeEec-------------CCCCCcccccccCCC
Confidence            9998888876667788899999766 56789999999999998754444442             355568888999999


Q ss_pred             CEEEEecCCCcEEEEEcccceeeeeecC------C---------------------------------------------
Q 021247          171 RRIACGSMDGTISVFDVTRAKFLHHLEG------H---------------------------------------------  199 (315)
Q Consensus       171 ~~l~~~s~dg~i~i~d~~~~~~~~~~~~------~---------------------------------------------  199 (315)
                      +.++++..||+|++|++.+++++..+..      +                                             
T Consensus       203 Kr~~tgy~dgti~~Wn~ktg~p~~~~~~~e~~~~~~~~~~~~~~~~~~g~~e~~~~~~~~~sgKVv~~~n~~~~~l~~~~  282 (399)
T KOG0296|consen  203 KRILTGYDDGTIIVWNPKTGQPLHKITQAEGLELPCISLNLAGSTLTKGNSEGVACGVNNGSGKVVNCNNGTVPELKPSQ  282 (399)
T ss_pred             ceEEEEecCceEEEEecCCCceeEEecccccCcCCccccccccceeEeccCCccEEEEccccceEEEecCCCCccccccc
Confidence            9999999999999999998887665431      0                                             


Q ss_pred             ccceEEEEEcCC--CCcEEEEEeCCCeEEEEeCCCCeeEEEeecccccEEEEEEcCCCCeEEEEeCCCcEEEEecCccce
Q 021247          200 FMPVRSLVYSPV--DPRVLFSASDDTHVHMYDAEGKSLVTAMSGHASWVLSVDASPDGAAITTGSSDRTVKLWDLNMRAA  277 (315)
Q Consensus       200 ~~~v~~~~~~~~--~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~  277 (315)
                      ...+.++.+.|.  .-.+.+.|+.||+|.|||+...++.... .|...|+.+.|-+ ..+|++++.||.|+.||.+++..
T Consensus       283 e~~~esve~~~~ss~lpL~A~G~vdG~i~iyD~a~~~~R~~c-~he~~V~~l~w~~-t~~l~t~c~~g~v~~wDaRtG~l  360 (399)
T KOG0296|consen  283 EELDESVESIPSSSKLPLAACGSVDGTIAIYDLAASTLRHIC-EHEDGVTKLKWLN-TDYLLTACANGKVRQWDARTGQL  360 (399)
T ss_pred             hhhhhhhhhcccccccchhhcccccceEEEEecccchhheec-cCCCceEEEEEcC-cchheeeccCceEEeeeccccce
Confidence            001112222221  1236788899999999999877665544 4778899999998 67899999999999999999999


Q ss_pred             ehcccccccceEEEEEeeCCCEEEEEeCCCcEEEeecC
Q 021247          278 MQSMTNHTDQVWGVSFRPLGGRVVSVSDDKSISLYEYS  315 (315)
Q Consensus       278 ~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~i~i~~~~  315 (315)
                      +.++.+|...|.+.+++|++++++++|.|++.+||+..
T Consensus       361 ~~~y~GH~~~Il~f~ls~~~~~vvT~s~D~~a~VF~v~  398 (399)
T KOG0296|consen  361 KFTYTGHQMGILDFALSPQKRLVVTVSDDNTALVFEVP  398 (399)
T ss_pred             EEEEecCchheeEEEEcCCCcEEEEecCCCeEEEEecC
Confidence            99999999999999999999999999999999999863

>KOG0286 consensus G-protein beta subunit [General function prediction only]

Probab=100.00  E-value=3.8e-39  Score=245.68  Aligned_cols=254  Identities=22%  Similarity=0.301  Sum_probs=224.9

Q ss_pred             ceeeccccccceEEEEeCCCCCEEEEeeCCCeEEEEECCCCceeEEeeCCcccEEEEEECCCCCeEEEEecCCCeEEEEe
Q 021247           52 LERTNTGHCLGVVSVAAHPSGIIAASASLDSFVRVFDVDTNASIATLEASPSEVWQMQFDPKGTTLAVAGGGSASVKLWD  131 (315)
Q Consensus        52 ~~~~~~~h~~~v~~~~~~~~g~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~~d  131 (315)
                      ..+.++||.+.|.++.|+++.+.+++++.||.+.|||.-+...+..+......|..++|+|+++.+ ++|+-|+.+.||+
T Consensus        47 ~rr~LkGH~~Ki~~~~ws~Dsr~ivSaSqDGklIvWDs~TtnK~haipl~s~WVMtCA~sPSg~~V-AcGGLdN~Csiy~  125 (343)
T KOG0286|consen   47 TRRTLKGHLNKIYAMDWSTDSRRIVSASQDGKLIVWDSFTTNKVHAIPLPSSWVMTCAYSPSGNFV-ACGGLDNKCSIYP  125 (343)
T ss_pred             eEEEecccccceeeeEecCCcCeEEeeccCCeEEEEEcccccceeEEecCceeEEEEEECCCCCeE-EecCcCceeEEEe
Confidence            347789999999999999999999999999999999999988888888888899999999999854 6788999999999


Q ss_pred             cCCcceeeeecCCCCCCCCCCccCCCCcceEEEEECCCCCEEEEecCCCcEEEEEcccceeeeeecCCccceEEEEEcCC
Q 021247          132 TATWNLIATLSIPRPEGLKPTDKSSSKKFVLSVAWSPDGRRIACGSMDGTISVFDVTRAKFLHHLEGHFMPVRSLVYSPV  211 (315)
Q Consensus       132 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~s~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~  211 (315)
                      +.+.+.....       ....+..+|..++.++.|-+ ...|++++.|.+..+||+++++.+..+.+|.+.|.++.++|.
T Consensus       126 ls~~d~~g~~-------~v~r~l~gHtgylScC~f~d-D~~ilT~SGD~TCalWDie~g~~~~~f~GH~gDV~slsl~p~  197 (343)
T KOG0286|consen  126 LSTRDAEGNV-------RVSRELAGHTGYLSCCRFLD-DNHILTGSGDMTCALWDIETGQQTQVFHGHTGDVMSLSLSPS  197 (343)
T ss_pred             cccccccccc-------eeeeeecCccceeEEEEEcC-CCceEecCCCceEEEEEcccceEEEEecCCcccEEEEecCCC
Confidence            8743111111       01112356788899999987 567899999999999999999999999999999999999998


Q ss_pred             CCcEEEEEeCCCeEEEEeCCCCeeEEEeecccccEEEEEEcCCCCeEEEEeCCCcEEEEecCccceehccccc--ccceE
Q 021247          212 DPRVLFSASDDTHVHMYDAEGKSLVTAMSGHASWVLSVDASPDGAAITTGSSDRTVKLWDLNMRAAMQSMTNH--TDQVW  289 (315)
Q Consensus       212 ~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~--~~~v~  289 (315)
                      +++.+++|+-|++.++||++.+..++.+.+|...|+++.|.|+|.-+++|+.|++.|+||++....+..+...  ...|+
T Consensus       198 ~~ntFvSg~cD~~aklWD~R~~~c~qtF~ghesDINsv~ffP~G~afatGSDD~tcRlyDlRaD~~~a~ys~~~~~~git  277 (343)
T KOG0286|consen  198 DGNTFVSGGCDKSAKLWDVRSGQCVQTFEGHESDINSVRFFPSGDAFATGSDDATCRLYDLRADQELAVYSHDSIICGIT  277 (343)
T ss_pred             CCCeEEecccccceeeeeccCcceeEeecccccccceEEEccCCCeeeecCCCceeEEEeecCCcEEeeeccCcccCCce
Confidence            8999999999999999999999999999999999999999999999999999999999999987777776533  35799


Q ss_pred             EEEEeeCCCEEEEEeCCCcEEEeec
Q 021247          290 GVSFRPLGGRVVSVSDDKSISLYEY  314 (315)
Q Consensus       290 ~~~~s~~~~~l~s~~~d~~i~i~~~  314 (315)
                      +|+||..|++|++|..|.++.+||.
T Consensus       278 Sv~FS~SGRlLfagy~d~~c~vWDt  302 (343)
T KOG0286|consen  278 SVAFSKSGRLLFAGYDDFTCNVWDT  302 (343)
T ss_pred             eEEEcccccEEEeeecCCceeEeec
Confidence            9999999999999999999999984

>KOG0645 consensus WD40 repeat protein [General function prediction only]

Probab=100.00  E-value=1.5e-38  Score=240.05  Aligned_cols=293  Identities=25%  Similarity=0.379  Sum_probs=234.7

Q ss_pred             CcccchhhhhhccccceEEEEEeecCCCCCcEEEEeeCCCcEEEEcCCC---Ccceee-ccccccceEEEEeCCCCCEEE
Q 021247            1 MKFAGLKSVENAHEESVWAVTWVPATETRPALLLTGSLDETVKLWRPDD---MQLERT-NTGHCLGVVSVAAHPSGIIAA   76 (315)
Q Consensus         1 ~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~~~l~sgs~d~~v~~w~~~~---~~~~~~-~~~h~~~v~~~~~~~~g~~l~   76 (315)
                      |..+-....+.+|.+.||.++|.|..   ..+|||||.|..|++|+...   ..+... -.+|+..|.+++++|.|++|+
T Consensus         1 m~~l~~~~~~~gh~~r~W~~awhp~~---g~ilAscg~Dk~vriw~~~~~~s~~ck~vld~~hkrsVRsvAwsp~g~~La   77 (312)
T KOG0645|consen    1 MDRLILEQKLSGHKDRVWSVAWHPGK---GVILASCGTDKAVRIWSTSSGDSWTCKTVLDDGHKRSVRSVAWSPHGRYLA   77 (312)
T ss_pred             CccceeEEeecCCCCcEEEEEeccCC---ceEEEeecCCceEEEEecCCCCcEEEEEeccccchheeeeeeecCCCcEEE
Confidence            33444556678999999999999962   12799999999999998763   222222 257999999999999999999


Q ss_pred             EeeCCCeEEEEECCCC--ceeEEeeCCcccEEEEEECCCCCeEEEEecCCCeEEEEecCCcceeeeecCCCCCCCCCCcc
Q 021247           77 SASLDSFVRVFDVDTN--ASIATLEASPSEVWQMQFDPKGTTLAVAGGGSASVKLWDTATWNLIATLSIPRPEGLKPTDK  154 (315)
Q Consensus        77 s~~~d~~i~~w~~~~~--~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~  154 (315)
                      +|+.|.++-||.-..+  +++.++++|.++|.+++|+++|+++ ++++.|..|-+|.+...........          .
T Consensus        78 ~aSFD~t~~Iw~k~~~efecv~~lEGHEnEVK~Vaws~sG~~L-ATCSRDKSVWiWe~deddEfec~aV----------L  146 (312)
T KOG0645|consen   78 SASFDATVVIWKKEDGEFECVATLEGHENEVKCVAWSASGNYL-ATCSRDKSVWIWEIDEDDEFECIAV----------L  146 (312)
T ss_pred             EeeccceEEEeecCCCceeEEeeeeccccceeEEEEcCCCCEE-EEeeCCCeEEEEEecCCCcEEEEee----------e
Confidence            9999999999998755  5788999999999999999999865 7899999999999875443322211          1


Q ss_pred             CCCCcceEEEEECCCCCEEEEecCCCcEEEEEcc-cc--eeeeeecCCccceEEEEEcCCCCcEEEEEeCCCeEEEEeCC
Q 021247          155 SSSKKFVLSVAWSPDGRRIACGSMDGTISVFDVT-RA--KFLHHLEGHFMPVRSLVYSPVDPRVLFSASDDTHVHMYDAE  231 (315)
Q Consensus       155 ~~~~~~i~~~~~~~~~~~l~~~s~dg~i~i~d~~-~~--~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~  231 (315)
                      ..|..-|..+.|+|...+|++++.|++|++|+-. ..  .+.+.+.+|+..|.+++|+| .+..|+++++|++++||-..
T Consensus       147 ~~HtqDVK~V~WHPt~dlL~S~SYDnTIk~~~~~~dddW~c~~tl~g~~~TVW~~~F~~-~G~rl~s~sdD~tv~Iw~~~  225 (312)
T KOG0645|consen  147 QEHTQDVKHVIWHPTEDLLFSCSYDNTIKVYRDEDDDDWECVQTLDGHENTVWSLAFDN-IGSRLVSCSDDGTVSIWRLY  225 (312)
T ss_pred             ccccccccEEEEcCCcceeEEeccCCeEEEEeecCCCCeeEEEEecCccceEEEEEecC-CCceEEEecCCcceEeeeec
Confidence            1234447889999999999999999999999865 22  45788999999999999998 56789999999999999754


Q ss_pred             CCeeEEEeecccccEEEEEEcCCCCeEEEEeCCCcEEEEecCcc---c---e-ehcccccccceEEEEEeeC-CCEEEEE
Q 021247          232 GKSLVTAMSGHASWVLSVDASPDGAAITTGSSDRTVKLWDLNMR---A---A-MQSMTNHTDQVWGVSFRPL-GGRVVSV  303 (315)
Q Consensus       232 ~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~d~~i~iwd~~~~---~---~-~~~~~~~~~~v~~~~~s~~-~~~l~s~  303 (315)
                      ..    ....|+..+..+.|.  ...++|++.|+.|++|.-...   .   . .+.-..|+..|++|.|.|. .++|+++
T Consensus       226 ~~----~~~~~sr~~Y~v~W~--~~~IaS~ggD~~i~lf~~s~~~d~p~~~l~~~~~~aHe~dVNsV~w~p~~~~~L~s~  299 (312)
T KOG0645|consen  226 TD----LSGMHSRALYDVPWD--NGVIASGGGDDAIRLFKESDSPDEPSWNLLAKKEGAHEVDVNSVQWNPKVSNRLASG  299 (312)
T ss_pred             cC----cchhcccceEeeeec--ccceEeccCCCEEEEEEecCCCCCchHHHHHhhhcccccccceEEEcCCCCCceeec
Confidence            21    112467788899998  447999999999999976542   1   1 1223468889999999995 6789999


Q ss_pred             eCCCcEEEeec
Q 021247          304 SDDKSISLYEY  314 (315)
Q Consensus       304 ~~d~~i~i~~~  314 (315)
                      |+||.|++|.+
T Consensus       300 ~DDG~v~~W~l  310 (312)
T KOG0645|consen  300 GDDGIVNFWEL  310 (312)
T ss_pred             CCCceEEEEEe
Confidence            99999999986

>KOG0293 consensus WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=2.4e-40  Score=263.02  Aligned_cols=291  Identities=21%  Similarity=0.322  Sum_probs=243.4

Q ss_pred             chhhhhhccccceEEEEEeecCCCCCcEEEEeeCCCcEEEEcCCC---CcceeeccccccceEEEEeCCCCCEEEEeeCC
Q 021247            5 GLKSVENAHEESVWAVTWVPATETRPALLLTGSLDETVKLWRPDD---MQLERTNTGHCLGVVSVAAHPSGIIAASASLD   81 (315)
Q Consensus         5 ~~~~~~~~h~~~v~~v~~~~~~~~~~~~l~sgs~d~~v~~w~~~~---~~~~~~~~~h~~~v~~~~~~~~g~~l~s~~~d   81 (315)
                      +...++..|+++||-+.|+|.++    +|||||.|.+..+|....   .++.+++.+|..+|..+.|+||.+++++++.|
T Consensus       215 qt~qil~~htdEVWfl~FS~nGk----yLAsaSkD~Taiiw~v~~d~~~kl~~tlvgh~~~V~yi~wSPDdryLlaCg~~  290 (519)
T KOG0293|consen  215 QTWQILQDHTDEVWFLQFSHNGK----YLASASKDSTAIIWIVVYDVHFKLKKTLVGHSQPVSYIMWSPDDRYLLACGFD  290 (519)
T ss_pred             hhhhhHhhCCCcEEEEEEcCCCe----eEeeccCCceEEEEEEecCcceeeeeeeecccCceEEEEECCCCCeEEecCch
Confidence            45567889999999999999887    799999999999998643   34567788999999999999999999999999


Q ss_pred             CeEEEEECCCCceeEEeeCC-cccEEEEEECCCCCeEEEEecCCCeEEEEecCCcceeeeecCCCCCCCCCCccCCCCcc
Q 021247           82 SFVRVFDVDTNASIATLEAS-PSEVWQMQFDPKGTTLAVAGGGSASVKLWDTATWNLIATLSIPRPEGLKPTDKSSSKKF  160 (315)
Q Consensus        82 ~~i~~w~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  160 (315)
                      ..+++||+.++.+...+... ...+.+++|.|+|..+ ++|+.|+++..||+.. +....+..            .....
T Consensus       291 e~~~lwDv~tgd~~~~y~~~~~~S~~sc~W~pDg~~~-V~Gs~dr~i~~wdlDg-n~~~~W~g------------vr~~~  356 (519)
T KOG0293|consen  291 EVLSLWDVDTGDLRHLYPSGLGFSVSSCAWCPDGFRF-VTGSPDRTIIMWDLDG-NILGNWEG------------VRDPK  356 (519)
T ss_pred             HheeeccCCcchhhhhcccCcCCCcceeEEccCCcee-EecCCCCcEEEecCCc-chhhcccc------------cccce
Confidence            99999999999988776554 5678999999999875 6899999999999964 33322211            11123


Q ss_pred             eEEEEECCCCCEEEEecCCCcEEEEEcccceeeeeecCCccceEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCeeEEEee
Q 021247          161 VLSVAWSPDGRRIACGSMDGTISVFDVTRAKFLHHLEGHFMPVRSLVYSPVDPRVLFSASDDTHVHMYDAEGKSLVTAMS  240 (315)
Q Consensus       161 i~~~~~~~~~~~l~~~s~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~  240 (315)
                      |.+++..+||+++++...|..|++++.++........ ...+|+++..+. ++++++..-.+..+++||++...++..+.
T Consensus       357 v~dlait~Dgk~vl~v~~d~~i~l~~~e~~~dr~lis-e~~~its~~iS~-d~k~~LvnL~~qei~LWDl~e~~lv~kY~  434 (519)
T KOG0293|consen  357 VHDLAITYDGKYVLLVTVDKKIRLYNREARVDRGLIS-EEQPITSFSISK-DGKLALVNLQDQEIHLWDLEENKLVRKYF  434 (519)
T ss_pred             eEEEEEcCCCcEEEEEecccceeeechhhhhhhcccc-ccCceeEEEEcC-CCcEEEEEcccCeeEEeecchhhHHHHhh
Confidence            8899999999999999999999999987655443333 346899999997 77888888899999999999888888888


Q ss_pred             ccccc--EEEEEEcC-CCCeEEEEeCCCcEEEEecCccceehcccccccceEEEEEeeCCC-EEEEEeCCCcEEEeecC
Q 021247          241 GHASW--VLSVDASP-DGAAITTGSSDRTVKLWDLNMRAAMQSMTNHTDQVWGVSFRPLGG-RVVSVSDDKSISLYEYS  315 (315)
Q Consensus       241 ~~~~~--i~~~~~~~-~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~-~l~s~~~d~~i~i~~~~  315 (315)
                      ||...  |..-+|-. +..++++|+.|+.|+||+..+++++.++.+|...|++|+|+|... ++|++|+||+||||..+
T Consensus       435 Ghkq~~fiIrSCFgg~~~~fiaSGSED~kvyIWhr~sgkll~~LsGHs~~vNcVswNP~~p~m~ASasDDgtIRIWg~~  513 (519)
T KOG0293|consen  435 GHKQGHFIIRSCFGGGNDKFIASGSEDSKVYIWHRISGKLLAVLSGHSKTVNCVSWNPADPEMFASASDDGTIRIWGPS  513 (519)
T ss_pred             cccccceEEEeccCCCCcceEEecCCCceEEEEEccCCceeEeecCCcceeeEEecCCCCHHHhhccCCCCeEEEecCC
Confidence            88543  44445554 447999999999999999999999999999999999999999754 67999999999999753

>PLN00181 protein SPA1-RELATED; Provisional

Probab=100.00  E-value=1.8e-38  Score=294.40  Aligned_cols=283  Identities=20%  Similarity=0.323  Sum_probs=234.2

Q ss_pred             hccccceEEEEEeecCCCCCcEEEEeeCCCcEEEEcCCCC----c----ceeeccccccceEEEEeCC-CCCEEEEeeCC
Q 021247           11 NAHEESVWAVTWVPATETRPALLLTGSLDETVKLWRPDDM----Q----LERTNTGHCLGVVSVAAHP-SGIIAASASLD   81 (315)
Q Consensus        11 ~~h~~~v~~v~~~~~~~~~~~~l~sgs~d~~v~~w~~~~~----~----~~~~~~~h~~~v~~~~~~~-~g~~l~s~~~d   81 (315)
                      .+|...|++++|+|.+.    ++++|+.|+.|++|+....    .    ..... .+...+.+++|++ .+.++++++.|
T Consensus       480 ~~~~~~V~~i~fs~dg~----~latgg~D~~I~iwd~~~~~~~~~~~~~~~~~~-~~~~~v~~l~~~~~~~~~las~~~D  554 (793)
T PLN00181        480 LNSSNLVCAIGFDRDGE----FFATAGVNKKIKIFECESIIKDGRDIHYPVVEL-ASRSKLSGICWNSYIKSQVASSNFE  554 (793)
T ss_pred             cCCCCcEEEEEECCCCC----EEEEEeCCCEEEEEECCcccccccccccceEEe-cccCceeeEEeccCCCCEEEEEeCC
Confidence            35899999999999765    7999999999999986431    1    01112 2345788999987 47899999999


Q ss_pred             CeEEEEECCCCceeEEeeCCcccEEEEEECCCCCeEEEEecCCCeEEEEecCCcceeeeecCCCCCCCCCCccCCCCcce
Q 021247           82 SFVRVFDVDTNASIATLEASPSEVWQMQFDPKGTTLAVAGGGSASVKLWDTATWNLIATLSIPRPEGLKPTDKSSSKKFV  161 (315)
Q Consensus        82 ~~i~~w~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i  161 (315)
                      ++|++||+.+++.+..+..|...|++++|+|....++++|+.|++|++||+++++.+..+..              ...+
T Consensus       555 g~v~lWd~~~~~~~~~~~~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~~~~~~~~~--------------~~~v  620 (793)
T PLN00181        555 GVVQVWDVARSQLVTEMKEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQGVSIGTIKT--------------KANI  620 (793)
T ss_pred             CeEEEEECCCCeEEEEecCCCCCEEEEEEcCCCCCEEEEEcCCCEEEEEECCCCcEEEEEec--------------CCCe
Confidence            99999999999988899999999999999985545678899999999999998776655532              1237


Q ss_pred             EEEEEC-CCCCEEEEecCCCcEEEEEcccce-eeeeecCCccceEEEEEcCCCCcEEEEEeCCCeEEEEeCCC------C
Q 021247          162 LSVAWS-PDGRRIACGSMDGTISVFDVTRAK-FLHHLEGHFMPVRSLVYSPVDPRVLFSASDDTHVHMYDAEG------K  233 (315)
Q Consensus       162 ~~~~~~-~~~~~l~~~s~dg~i~i~d~~~~~-~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~------~  233 (315)
                      .++.|+ +++.+|++|+.||.|++||++..+ .+..+.+|...|.++.|.  ++..+++++.|+.|++||+..      .
T Consensus       621 ~~v~~~~~~g~~latgs~dg~I~iwD~~~~~~~~~~~~~h~~~V~~v~f~--~~~~lvs~s~D~~ikiWd~~~~~~~~~~  698 (793)
T PLN00181        621 CCVQFPSESGRSLAFGSADHKVYYYDLRNPKLPLCTMIGHSKTVSYVRFV--DSSTLVSSSTDNTLKLWDLSMSISGINE  698 (793)
T ss_pred             EEEEEeCCCCCEEEEEeCCCeEEEEECCCCCccceEecCCCCCEEEEEEe--CCCEEEEEECCCEEEEEeCCCCccccCC
Confidence            889995 578999999999999999998765 466778899999999997  466899999999999999874      2


Q ss_pred             eeEEEeecccccEEEEEEcCCCCeEEEEeCCCcEEEEecCccceeh-------------cccccccceEEEEEeeCCCEE
Q 021247          234 SLVTAMSGHASWVLSVDASPDGAAITTGSSDRTVKLWDLNMRAAMQ-------------SMTNHTDQVWGVSFRPLGGRV  300 (315)
Q Consensus       234 ~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~-------------~~~~~~~~v~~~~~s~~~~~l  300 (315)
                      ..+..+.+|...+..+.++|++.+|++|+.|+.|++|+.....+..             ....|...|.+++|+|++..|
T Consensus       699 ~~l~~~~gh~~~i~~v~~s~~~~~lasgs~D~~v~iw~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~V~~v~ws~~~~~l  778 (793)
T PLN00181        699 TPLHSFMGHTNVKNFVGLSVSDGYIATGSETNEVFVYHKAFPMPVLSYKFKTIDPVSGLEVDDASQFISSVCWRGQSSTL  778 (793)
T ss_pred             cceEEEcCCCCCeeEEEEcCCCCEEEEEeCCCEEEEEECCCCCceEEEecccCCcccccccCCCCcEEEEEEEcCCCCeE
Confidence            4667788999999999999999999999999999999976443221             112345679999999999999


Q ss_pred             EEEeCCCcEEEeec
Q 021247          301 VSVSDDKSISLYEY  314 (315)
Q Consensus       301 ~s~~~d~~i~i~~~  314 (315)
                      ++++.||+|+||++
T Consensus       779 va~~~dG~I~i~~~  792 (793)
T PLN00181        779 VAANSTGNIKILEM  792 (793)
T ss_pred             EEecCCCcEEEEec
Confidence            99999999999986

>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=1.2e-39  Score=271.24  Aligned_cols=290  Identities=22%  Similarity=0.348  Sum_probs=259.7

Q ss_pred             cchhhhhhccccceEEEEEeecCCCCCcEEEEeeCCCcEEEEcCCCCcceeeccccccceEEEEeCCCCCEEEEeeCCCe
Q 021247            4 AGLKSVENAHEESVWAVTWVPATETRPALLLTGSLDETVKLWRPDDMQLERTNTGHCLGVVSVAAHPSGIIAASASLDSF   83 (315)
Q Consensus         4 ~~~~~~~~~h~~~v~~v~~~~~~~~~~~~l~sgs~d~~v~~w~~~~~~~~~~~~~h~~~v~~~~~~~~g~~l~s~~~d~~   83 (315)
                      +.+..-...|++.|-+|.+.|..+    -++++-.+|.|.||+.++..+.+.+.-...||.+..|-+..+.+++|+.|..
T Consensus         3 l~~krk~~~rSdRVKsVd~HPteP----w~la~LynG~V~IWnyetqtmVksfeV~~~PvRa~kfiaRknWiv~GsDD~~   78 (794)
T KOG0276|consen    3 LDFKRKFQSRSDRVKSVDFHPTEP----WILAALYNGDVQIWNYETQTMVKSFEVSEVPVRAAKFIARKNWIVTGSDDMQ   78 (794)
T ss_pred             chhhhHhhccCCceeeeecCCCCc----eEEEeeecCeeEEEecccceeeeeeeecccchhhheeeeccceEEEecCCce
Confidence            344445567999999999999765    6888899999999999999999988878889999999999999999999999


Q ss_pred             EEEEECCCCceeEEeeCCcccEEEEEECCCCCeEEEEecCCCeEEEEecCCc-ceeeeecCCCCCCCCCCccCCCCcceE
Q 021247           84 VRVFDVDTNASIATLEASPSEVWQMQFDPKGTTLAVAGGGSASVKLWDTATW-NLIATLSIPRPEGLKPTDKSSSKKFVL  162 (315)
Q Consensus        84 i~~w~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~~d~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~  162 (315)
                      ||+++.++.+.+..++.|++-|.+++.||...++ +++++|-+|++||-... .+..+             ..+|..+|.
T Consensus        79 IrVfnynt~ekV~~FeAH~DyIR~iavHPt~P~v-LtsSDDm~iKlW~we~~wa~~qt-------------feGH~HyVM  144 (794)
T KOG0276|consen   79 IRVFNYNTGEKVKTFEAHSDYIRSIAVHPTLPYV-LTSSDDMTIKLWDWENEWACEQT-------------FEGHEHYVM  144 (794)
T ss_pred             EEEEecccceeeEEeeccccceeeeeecCCCCeE-EecCCccEEEEeeccCceeeeeE-------------EcCcceEEE
Confidence            9999999999999999999999999999998865 68899999999998642 22222             246788999


Q ss_pred             EEEECC-CCCEEEEecCCCcEEEEEcccceeeeeecCCccceEEEEEcCC-CCcEEEEEeCCCeEEEEeCCCCeeEEEee
Q 021247          163 SVAWSP-DGRRIACGSMDGTISVFDVTRAKFLHHLEGHFMPVRSLVYSPV-DPRVLFSASDDTHVHMYDAEGKSLVTAMS  240 (315)
Q Consensus       163 ~~~~~~-~~~~l~~~s~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~-~~~~l~s~~~d~~i~~wd~~~~~~~~~~~  240 (315)
                      .++|+| |.+.|++++.|++|++|.+....+..++.+|...|+++.+-+. +..+|++|++|..+++||.++.+++..+.
T Consensus       145 qv~fnPkD~ntFaS~sLDrTVKVWslgs~~~nfTl~gHekGVN~Vdyy~~gdkpylIsgaDD~tiKvWDyQtk~CV~TLe  224 (794)
T KOG0276|consen  145 QVAFNPKDPNTFASASLDRTVKVWSLGSPHPNFTLEGHEKGVNCVDYYTGGDKPYLISGADDLTIKVWDYQTKSCVQTLE  224 (794)
T ss_pred             EEEecCCCccceeeeeccccEEEEEcCCCCCceeeeccccCcceEEeccCCCcceEEecCCCceEEEeecchHHHHHHhh
Confidence            999999 6789999999999999999999999999999999999999774 34599999999999999999999999999


Q ss_pred             cccccEEEEEEcCCCCeEEEEeCCCcEEEEecCccceehcccccccceEEEEEeeCCCEEEEEeCCCcEEE
Q 021247          241 GHASWVLSVDASPDGAAITTGSSDRTVKLWDLNMRAAMQSMTNHTDQVWGVSFRPLGGRVVSVSDDKSISL  311 (315)
Q Consensus       241 ~~~~~i~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~i~i  311 (315)
                      +|...|..+.|+|.-.+++||+.||+||||+..+-+...++....+.+|+++-.+.++.++.|.++|.|.|
T Consensus       225 GHt~Nvs~v~fhp~lpiiisgsEDGTvriWhs~Ty~lE~tLn~gleRvW~I~~~k~~~~i~vG~Deg~i~v  295 (794)
T KOG0276|consen  225 GHTNNVSFVFFHPELPIIISGSEDGTVRIWNSKTYKLEKTLNYGLERVWCIAAHKGDGKIAVGFDEGSVTV  295 (794)
T ss_pred             cccccceEEEecCCCcEEEEecCCccEEEecCcceehhhhhhcCCceEEEEeecCCCCeEEEeccCCcEEE
Confidence            99999999999999999999999999999999998888888877889999999999899999998887754

>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=100.00  E-value=1.5e-38  Score=269.77  Aligned_cols=283  Identities=23%  Similarity=0.380  Sum_probs=242.9

Q ss_pred             ccceEEEEEeecCCCCCcEEEEeeC-CCcEEEEcCCCCcceeeccccccceEEEEeCCCCCEEEEeeCCCeEEEEECCCC
Q 021247           14 EESVWAVTWVPATETRPALLLTGSL-DETVKLWRPDDMQLERTNTGHCLGVVSVAAHPSGIIAASASLDSFVRVFDVDTN   92 (315)
Q Consensus        14 ~~~v~~v~~~~~~~~~~~~l~sgs~-d~~v~~w~~~~~~~~~~~~~h~~~v~~~~~~~~g~~l~s~~~d~~i~~w~~~~~   92 (315)
                      +.+|..++|...++    -|+-|+. =|.+-+|+.....-.....+|...+.+++++|||+++++|+.||.|+|||...+
T Consensus       307 ~~~I~t~~~N~tGD----WiA~g~~klgQLlVweWqsEsYVlKQQgH~~~i~~l~YSpDgq~iaTG~eDgKVKvWn~~Sg  382 (893)
T KOG0291|consen  307 DQKILTVSFNSTGD----WIAFGCSKLGQLLVWEWQSESYVLKQQGHSDRITSLAYSPDGQLIATGAEDGKVKVWNTQSG  382 (893)
T ss_pred             cceeeEEEecccCC----EEEEcCCccceEEEEEeeccceeeeccccccceeeEEECCCCcEEEeccCCCcEEEEeccCc
Confidence            35778888877664    4666654 589999998766666667899999999999999999999999999999999999


Q ss_pred             ceeEEeeCCcccEEEEEECCCCCeEEEEecCCCeEEEEecCCcceeeeecCCCCCCCCCCccCCCCcceEEEEECCCCCE
Q 021247           93 ASIATLEASPSEVWQMQFDPKGTTLAVAGGGSASVKLWDTATWNLIATLSIPRPEGLKPTDKSSSKKFVLSVAWSPDGRR  172 (315)
Q Consensus        93 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~  172 (315)
                      -|+.++..|...|..++|+..++. +++.+-||+|+.||+..++..+++..|.+.+            ..|++..|.|..
T Consensus       383 fC~vTFteHts~Vt~v~f~~~g~~-llssSLDGtVRAwDlkRYrNfRTft~P~p~Q------------fscvavD~sGel  449 (893)
T KOG0291|consen  383 FCFVTFTEHTSGVTAVQFTARGNV-LLSSSLDGTVRAWDLKRYRNFRTFTSPEPIQ------------FSCVAVDPSGEL  449 (893)
T ss_pred             eEEEEeccCCCceEEEEEEecCCE-EEEeecCCeEEeeeecccceeeeecCCCcee------------eeEEEEcCCCCE
Confidence            999999999999999999998875 5678899999999999998888887776532            679999999999


Q ss_pred             EEEecCCC-cEEEEEcccceeeeeecCCccceEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCeeEEEeecccccEEEEEE
Q 021247          173 IACGSMDG-TISVFDVTRAKFLHHLEGHFMPVRSLVYSPVDPRVLFSASDDTHVHMYDAEGKSLVTAMSGHASWVLSVDA  251 (315)
Q Consensus       173 l~~~s~dg-~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~i~~~~~  251 (315)
                      +.+|+.|. .|++|++.+|+.+..+.+|++||.++.|+| .+..|++++.|.+|++||+-........-.+...+..++|
T Consensus       450 V~AG~~d~F~IfvWS~qTGqllDiLsGHEgPVs~l~f~~-~~~~LaS~SWDkTVRiW~if~s~~~vEtl~i~sdvl~vsf  528 (893)
T KOG0291|consen  450 VCAGAQDSFEIFVWSVQTGQLLDILSGHEGPVSGLSFSP-DGSLLASGSWDKTVRIWDIFSSSGTVETLEIRSDVLAVSF  528 (893)
T ss_pred             EEeeccceEEEEEEEeecCeeeehhcCCCCcceeeEEcc-ccCeEEeccccceEEEEEeeccCceeeeEeeccceeEEEE
Confidence            99999988 599999999999999999999999999999 5679999999999999998665433333345677899999


Q ss_pred             cCCCCeEEEEeCCCcEEEEecCccceehccc--------------------ccccceEEEEEeeCCCEEEEEeCCCcEEE
Q 021247          252 SPDGAAITTGSSDRTVKLWDLNMRAAMQSMT--------------------NHTDQVWGVSFRPLGGRVVSVSDDKSISL  311 (315)
Q Consensus       252 ~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~--------------------~~~~~v~~~~~s~~~~~l~s~~~d~~i~i  311 (315)
                      +|+|+-|+++..||.|.+||.+.+..+..+.                    ......+.+.+|+||++|++||....|.|
T Consensus       529 rPdG~elaVaTldgqItf~d~~~~~q~~~IdgrkD~~~gR~~~D~~ta~~sa~~K~Ftti~ySaDG~~IlAgG~sn~iCi  608 (893)
T KOG0291|consen  529 RPDGKELAVATLDGQITFFDIKEAVQVGSIDGRKDLSGGRKETDRITAENSAKGKTFTTICYSADGKCILAGGESNSICI  608 (893)
T ss_pred             cCCCCeEEEEEecceEEEEEhhhceeeccccchhhccccccccceeehhhcccCCceEEEEEcCCCCEEEecCCcccEEE
Confidence            9999999999999999999987654442221                    12356889999999999999999999999


Q ss_pred             eec
Q 021247          312 YEY  314 (315)
Q Consensus       312 ~~~  314 (315)
                      |+.
T Consensus       609 Y~v  611 (893)
T KOG0291|consen  609 YDV  611 (893)
T ss_pred             EEC
Confidence            986

>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]

Probab=100.00  E-value=7.4e-41  Score=260.89  Aligned_cols=272  Identities=25%  Similarity=0.440  Sum_probs=234.1

Q ss_pred             cccceEEEEEeecCCCCCcEEEEeeCCCcEEEEcCCCCcceeeccccccceEEEEeCCCCCEEEEeeCCCeEEEEECCCC
Q 021247           13 HEESVWAVTWVPATETRPALLLTGSLDETVKLWRPDDMQLERTNTGHCLGVVSVAAHPSGIIAASASLDSFVRVFDVDTN   92 (315)
Q Consensus        13 h~~~v~~v~~~~~~~~~~~~l~sgs~d~~v~~w~~~~~~~~~~~~~h~~~v~~~~~~~~g~~l~s~~~d~~i~~w~~~~~   92 (315)
                      -.+.|+|+++-+.      .+++|..|++|++||.....+.+.+.||++.|.|+++..  ..+++|+.|.+|++||.+++
T Consensus       196 ~skgVYClQYDD~------kiVSGlrDnTikiWD~n~~~c~~~L~GHtGSVLCLqyd~--rviisGSSDsTvrvWDv~tg  267 (499)
T KOG0281|consen  196 NSKGVYCLQYDDE------KIVSGLRDNTIKIWDKNSLECLKILTGHTGSVLCLQYDE--RVIVSGSSDSTVRVWDVNTG  267 (499)
T ss_pred             cCCceEEEEecch------hhhcccccCceEEeccccHHHHHhhhcCCCcEEeeeccc--eEEEecCCCceEEEEeccCC
Confidence            3568999998542      489999999999999999999999999999999999854  59999999999999999999


Q ss_pred             ceeEEeeCCcccEEEEEECCCCCeEEEEecCCCeEEEEecCCcceeeeecCCCCCCCCCCccCCCCcceEEEEECCCCCE
Q 021247           93 ASIATLEASPSEVWQMQFDPKGTTLAVAGGGSASVKLWDTATWNLIATLSIPRPEGLKPTDKSSSKKFVLSVAWSPDGRR  172 (315)
Q Consensus        93 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~  172 (315)
                      +++.++.+|-+.|..+.|+..   ++++++.|.++.+||+.....+.-.          .-..+|...|+.+.|+  .++
T Consensus       268 e~l~tlihHceaVLhlrf~ng---~mvtcSkDrsiaVWdm~sps~it~r----------rVLvGHrAaVNvVdfd--~ky  332 (499)
T KOG0281|consen  268 EPLNTLIHHCEAVLHLRFSNG---YMVTCSKDRSIAVWDMASPTDITLR----------RVLVGHRAAVNVVDFD--DKY  332 (499)
T ss_pred             chhhHHhhhcceeEEEEEeCC---EEEEecCCceeEEEeccCchHHHHH----------HHHhhhhhheeeeccc--cce
Confidence            999999999999999999743   6789999999999998753211000          0113456668888876  469


Q ss_pred             EEEecCCCcEEEEEcccceeeeeecCCccceEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCeeEEEeecccccEEEEEEc
Q 021247          173 IACGSMDGTISVFDVTRAKFLHHLEGHFMPVRSLVYSPVDPRVLFSASDDTHVHMYDAEGKSLVTAMSGHASWVLSVDAS  252 (315)
Q Consensus       173 l~~~s~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~i~~~~~~  252 (315)
                      +++++.|.+|++|++.++.++..+.+|...|.++.+   .++++++|+.|.+|++||+..+.++..+++|..-|.++.|+
T Consensus       333 IVsASgDRTikvW~~st~efvRtl~gHkRGIAClQY---r~rlvVSGSSDntIRlwdi~~G~cLRvLeGHEeLvRciRFd  409 (499)
T KOG0281|consen  333 IVSASGDRTIKVWSTSTCEFVRTLNGHKRGIACLQY---RDRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRFD  409 (499)
T ss_pred             EEEecCCceEEEEeccceeeehhhhcccccceehhc---cCeEEEecCCCceEEEEeccccHHHHHHhchHHhhhheeec
Confidence            999999999999999999999999999999988875   57899999999999999999999999999999999999996


Q ss_pred             CCCCeEEEEeCCCcEEEEecCccc---------eehcccccccceEEEEEeeCCCEEEEEeCCCcEEEeec
Q 021247          253 PDGAAITTGSSDRTVKLWDLNMRA---------AMQSMTNHTDQVWGVSFRPLGGRVVSVSDDKSISLYEY  314 (315)
Q Consensus       253 ~~~~~l~s~~~d~~i~iwd~~~~~---------~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~i~i~~~  314 (315)
                        .+.+++|+.||+|++||+..+.         ++.++..|++.|..+.|..  ..+++.+-|.+|.||||
T Consensus       410 --~krIVSGaYDGkikvWdl~aaldpra~~~~~Cl~~lv~hsgRVFrLQFD~--fqIvsssHddtILiWdF  476 (499)
T KOG0281|consen  410 --NKRIVSGAYDGKIKVWDLQAALDPRAPASTLCLRTLVEHSGRVFRLQFDE--FQIISSSHDDTILIWDF  476 (499)
T ss_pred             --CceeeeccccceEEEEecccccCCcccccchHHHhhhhccceeEEEeecc--eEEEeccCCCeEEEEEc
Confidence              4579999999999999997653         2445567899999999965  48999999999999997

>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]

Probab=100.00  E-value=2.3e-40  Score=262.65  Aligned_cols=251  Identities=25%  Similarity=0.417  Sum_probs=223.7

Q ss_pred             cchhhhhhccccceEEEEEeecCCCCCcEEEEeeCCCcEEEEcCCCCcceeeccccc-cceEEEEeCCCCCEEEEeeCCC
Q 021247            4 AGLKSVENAHEESVWAVTWVPATETRPALLLTGSLDETVKLWRPDDMQLERTNTGHC-LGVVSVAAHPSGIIAASASLDS   82 (315)
Q Consensus         4 ~~~~~~~~~h~~~v~~v~~~~~~~~~~~~l~sgs~d~~v~~w~~~~~~~~~~~~~h~-~~v~~~~~~~~g~~l~s~~~d~   82 (315)
                      ..++.++.+|+.+|.++.|++.+.    .++||+.+|.||+|++.. ...+.+.+|. ..|++++|+|....+++++.|+
T Consensus       128 fnFEtilQaHDs~Vr~m~ws~~g~----wmiSgD~gG~iKyWqpnm-nnVk~~~ahh~eaIRdlafSpnDskF~t~SdDg  202 (464)
T KOG0284|consen  128 FNFETILQAHDSPVRTMKWSHNGT----WMISGDKGGMIKYWQPNM-NNVKIIQAHHAEAIRDLAFSPNDSKFLTCSDDG  202 (464)
T ss_pred             eeHHHHhhhhcccceeEEEccCCC----EEEEcCCCceEEecccch-hhhHHhhHhhhhhhheeccCCCCceeEEecCCC
Confidence            467889999999999999999876    699999999999999754 4445555554 8999999999999999999999


Q ss_pred             eEEEEECCCCceeEEeeCCcccEEEEEECCCCCeEEEEecCCCeEEEEecCCcceeeeecCCCCCCCCCCccCCCCcceE
Q 021247           83 FVRVFDVDTNASIATLEASPSEVWQMQFDPKGTTLAVAGGGSASVKLWDTATWNLIATLSIPRPEGLKPTDKSSSKKFVL  162 (315)
Q Consensus        83 ~i~~w~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~  162 (315)
                      +|+|||....+....+.+|.-.|.+++|+|... ++++++.|..|++||.++++++.++.             .|+..|.
T Consensus       203 ~ikiWdf~~~kee~vL~GHgwdVksvdWHP~kg-LiasgskDnlVKlWDprSg~cl~tlh-------------~HKntVl  268 (464)
T KOG0284|consen  203 TIKIWDFRMPKEERVLRGHGWDVKSVDWHPTKG-LIASGSKDNLVKLWDPRSGSCLATLH-------------GHKNTVL  268 (464)
T ss_pred             eEEEEeccCCchhheeccCCCCcceeccCCccc-eeEEccCCceeEeecCCCcchhhhhh-------------hccceEE
Confidence            999999998888778899999999999999876 56789999999999999998887663             4666799


Q ss_pred             EEEECCCCCEEEEecCCCcEEEEEcccceeeeeecCCccceEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCeeEEE-eec
Q 021247          163 SVAWSPDGRRIACGSMDGTISVFDVTRAKFLHHLEGHFMPVRSLVYSPVDPRVLFSASDDTHVHMYDAEGKSLVTA-MSG  241 (315)
Q Consensus       163 ~~~~~~~~~~l~~~s~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~-~~~  241 (315)
                      .+.|+|++++|+++|.|..++++|+++.+.+..+++|+..++++.|+|-...+|.+|+.||.|..|.....+.+.. -.+
T Consensus       269 ~~~f~~n~N~Llt~skD~~~kv~DiR~mkEl~~~r~Hkkdv~~~~WhP~~~~lftsgg~Dgsvvh~~v~~~~p~~~i~~A  348 (464)
T KOG0284|consen  269 AVKFNPNGNWLLTGSKDQSCKVFDIRTMKELFTYRGHKKDVTSLTWHPLNESLFTSGGSDGSVVHWVVGLEEPLGEIPPA  348 (464)
T ss_pred             EEEEcCCCCeeEEccCCceEEEEehhHhHHHHHhhcchhhheeeccccccccceeeccCCCceEEEeccccccccCCCcc
Confidence            9999999999999999999999999988889999999999999999999999999999999999999874444433 357


Q ss_pred             ccccEEEEEEcCCCCeEEEEeCCCcEEEEecC
Q 021247          242 HASWVLSVDASPDGAAITTGSSDRTVKLWDLN  273 (315)
Q Consensus       242 ~~~~i~~~~~~~~~~~l~s~~~d~~i~iwd~~  273 (315)
                      |...|++++|+|-|.+|++|+.|.++++|.-.
T Consensus       349 Hd~~iwsl~~hPlGhil~tgsnd~t~rfw~r~  380 (464)
T KOG0284|consen  349 HDGEIWSLAYHPLGHILATGSNDRTVRFWTRN  380 (464)
T ss_pred             cccceeeeeccccceeEeecCCCcceeeeccC
Confidence            99999999999999999999999999999653

>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]

Probab=100.00  E-value=2.4e-39  Score=276.09  Aligned_cols=250  Identities=28%  Similarity=0.435  Sum_probs=219.3

Q ss_pred             EEEeeCCCcEEEEcCCCCcceeeccccccceEEEEeCCCCCEEEEeeCCCeEEEEECCCCceeEEeeCCcccEEEEEECC
Q 021247           33 LLTGSLDETVKLWRPDDMQLERTNTGHCLGVVSVAAHPSGIIAASASLDSFVRVFDVDTNASIATLEASPSEVWQMQFDP  112 (315)
Q Consensus        33 l~sgs~d~~v~~w~~~~~~~~~~~~~h~~~v~~~~~~~~g~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~v~~~~~~~  112 (315)
                      +=+++.|-.+.+.|.+.....+.+.||.++|..+.|+|+.++|++++.|+++|+|.+.+..++..+++|..|||.++|+|
T Consensus       424 ~d~~sad~~~~~~D~~~~~~~~~L~GH~GPVyg~sFsPd~rfLlScSED~svRLWsl~t~s~~V~y~GH~~PVwdV~F~P  503 (707)
T KOG0263|consen  424 IDTESADVDVDMLDDDSSGTSRTLYGHSGPVYGCSFSPDRRFLLSCSEDSSVRLWSLDTWSCLVIYKGHLAPVWDVQFAP  503 (707)
T ss_pred             ccccccchhhhhccccCCceeEEeecCCCceeeeeecccccceeeccCCcceeeeecccceeEEEecCCCcceeeEEecC
Confidence            45666676778888777777788999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCeEEEEecCCCeEEEEecCCcceeeeecCCCCCCCCCCccCCCCcceEEEEECCCCCEEEEecCCCcEEEEEccccee
Q 021247          113 KGTTLAVAGGGSASVKLWDTATWNLIATLSIPRPEGLKPTDKSSSKKFVLSVAWSPDGRRIACGSMDGTISVFDVTRAKF  192 (315)
Q Consensus       113 ~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~s~dg~i~i~d~~~~~~  192 (315)
                      .|-+ +++++.|++.++|.....+..+.+..             |..-+.|+.|+|+.+++++||.|.++++||+.++..
T Consensus       504 ~GyY-Fatas~D~tArLWs~d~~~PlRifag-------------hlsDV~cv~FHPNs~Y~aTGSsD~tVRlWDv~~G~~  569 (707)
T KOG0263|consen  504 RGYY-FATASHDQTARLWSTDHNKPLRIFAG-------------HLSDVDCVSFHPNSNYVATGSSDRTVRLWDVSTGNS  569 (707)
T ss_pred             CceE-EEecCCCceeeeeecccCCchhhhcc-------------cccccceEEECCcccccccCCCCceEEEEEcCCCcE
Confidence            9765 57889999999999877555544432             333488999999999999999999999999999999


Q ss_pred             eeeecCCccceEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCeeEEEeecccccEEEEEEcCCCCeEEEEeCCCcEEEEec
Q 021247          193 LHHLEGHFMPVRSLVYSPVDPRVLFSASDDTHVHMYDAEGKSLVTAMSGHASWVLSVDASPDGAAITTGSSDRTVKLWDL  272 (315)
Q Consensus       193 ~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~d~~i~iwd~  272 (315)
                      +..+.+|..+|.+++|+| ++++|++|+.|+.|++||+.+++++..+.+|.+.|.++.|+.+|.+||+||.|++|++||+
T Consensus       570 VRiF~GH~~~V~al~~Sp-~Gr~LaSg~ed~~I~iWDl~~~~~v~~l~~Ht~ti~SlsFS~dg~vLasgg~DnsV~lWD~  648 (707)
T KOG0263|consen  570 VRIFTGHKGPVTALAFSP-CGRYLASGDEDGLIKIWDLANGSLVKQLKGHTGTIYSLSFSRDGNVLASGGADNSVRLWDL  648 (707)
T ss_pred             EEEecCCCCceEEEEEcC-CCceEeecccCCcEEEEEcCCCcchhhhhcccCceeEEEEecCCCEEEecCCCCeEEEEEc
Confidence            999999999999999999 8999999999999999999999999999999999999999999999999999999999998


Q ss_pred             Ccccee------------------------hcccccccceEEEEEeeCC
Q 021247          273 NMRAAM------------------------QSMTNHTDQVWGVSFRPLG  297 (315)
Q Consensus       273 ~~~~~~------------------------~~~~~~~~~v~~~~~s~~~  297 (315)
                      ......                        ..+.....+|.++.|...+
T Consensus       649 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~llgs~~tK~tpv~~l~FtrrN  697 (707)
T KOG0263|consen  649 TKVIELLNLGHISTSNSAITQENNASSLLLGSFYTKNTPVVGLHFTRRN  697 (707)
T ss_pred             hhhcccccccccccccccccccCCCCcceeeeeeecCceEEEEEEeccc
Confidence            643222                        1223334578888888765

>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=2.6e-38  Score=234.35  Aligned_cols=279  Identities=24%  Similarity=0.383  Sum_probs=240.1

Q ss_pred             hhhccccceEEEEEeecCCCCCcEEEEeeCCCcEEEEcCCCCcceeeccccccceEEEEeCCCCCEEEEeeCCCeEEEEE
Q 021247            9 VENAHEESVWAVTWVPATETRPALLLTGSLDETVKLWRPDDMQLERTNTGHCLGVVSVAAHPSGIIAASASLDSFVRVFD   88 (315)
Q Consensus         9 ~~~~h~~~v~~v~~~~~~~~~~~~l~sgs~d~~v~~w~~~~~~~~~~~~~h~~~v~~~~~~~~g~~l~s~~~d~~i~~w~   88 (315)
                      ++..|+++|.++.|.-+++    +.++++.|.+|++|++..+.++++..+|...|..++.+.++..+++++.|+.+.+||
T Consensus        12 ~l~~~qgaV~avryN~dGn----Y~ltcGsdrtvrLWNp~rg~liktYsghG~EVlD~~~s~Dnskf~s~GgDk~v~vwD   87 (307)
T KOG0316|consen   12 ILDCAQGAVRAVRYNVDGN----YCLTCGSDRTVRLWNPLRGALIKTYSGHGHEVLDAALSSDNSKFASCGGDKAVQVWD   87 (307)
T ss_pred             eecccccceEEEEEccCCC----EEEEcCCCceEEeecccccceeeeecCCCceeeeccccccccccccCCCCceEEEEE
Confidence            4578999999999998876    799999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCceeEEeeCCcccEEEEEECCCCCeEEEEecCCCeEEEEecCCcceeeeecCCCCCCCCCCc-cCCCCcceEEEEEC
Q 021247           89 VDTNASIATLEASPSEVWQMQFDPKGTTLAVAGGGSASVKLWDTATWNLIATLSIPRPEGLKPTD-KSSSKKFVLSVAWS  167 (315)
Q Consensus        89 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~~~~~~  167 (315)
                      +++++.++.+.+|...|+.++|+.+.. ++++|+.|..+++||.++...            +|.+ ....++.|.++..+
T Consensus        88 V~TGkv~Rr~rgH~aqVNtV~fNeesS-Vv~SgsfD~s~r~wDCRS~s~------------ePiQildea~D~V~Si~v~  154 (307)
T KOG0316|consen   88 VNTGKVDRRFRGHLAQVNTVRFNEESS-VVASGSFDSSVRLWDCRSRSF------------EPIQILDEAKDGVSSIDVA  154 (307)
T ss_pred             cccCeeeeecccccceeeEEEecCcce-EEEeccccceeEEEEcccCCC------------CccchhhhhcCceeEEEec
Confidence            999999999999999999999998765 678999999999999986321            1111 12234557777775


Q ss_pred             CCCCEEEEecCCCcEEEEEcccceeeeeecCCccceEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCeeEEEeecccccEE
Q 021247          168 PDGRRIACGSMDGTISVFDVTRAKFLHHLEGHFMPVRSLVYSPVDPRVLFSASDDTHVHMYDAEGKSLVTAMSGHASWVL  247 (315)
Q Consensus       168 ~~~~~l~~~s~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~i~  247 (315)
                        +..+++|+.||+++.||++.++......+|  ||+++.|++ +++..+.++.|+++++.|..++++++.+.+|...=.
T Consensus       155 --~heIvaGS~DGtvRtydiR~G~l~sDy~g~--pit~vs~s~-d~nc~La~~l~stlrLlDk~tGklL~sYkGhkn~ey  229 (307)
T KOG0316|consen  155 --EHEIVAGSVDGTVRTYDIRKGTLSSDYFGH--PITSVSFSK-DGNCSLASSLDSTLRLLDKETGKLLKSYKGHKNMEY  229 (307)
T ss_pred             --ccEEEeeccCCcEEEEEeecceeehhhcCC--cceeEEecC-CCCEEEEeeccceeeecccchhHHHHHhccccccee
Confidence              568999999999999999999887766665  899999998 778899999999999999999999999999976544


Q ss_pred             --EEEEcCCCCeEEEEeCCCcEEEEecCccceehcccccccc-eEEEEEeeCCCEEEEEeCCCcE
Q 021247          248 --SVDASPDGAAITTGSSDRTVKLWDLNMRAAMQSMTNHTDQ-VWGVSFRPLGGRVVSVSDDKSI  309 (315)
Q Consensus       248 --~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~-v~~~~~s~~~~~l~s~~~d~~i  309 (315)
                        ..+++.....+++|+.||.|.+||+.....+..+..+... +.+++++|....++++...+..
T Consensus       230 kldc~l~qsdthV~sgSEDG~Vy~wdLvd~~~~sk~~~~~~v~v~dl~~hp~~~~f~~A~~~~~~  294 (307)
T KOG0316|consen  230 KLDCCLNQSDTHVFSGSEDGKVYFWDLVDETQISKLSVVSTVIVTDLSCHPTMDDFITATGHGDL  294 (307)
T ss_pred             eeeeeecccceeEEeccCCceEEEEEeccceeeeeeccCCceeEEeeecccCccceeEecCCcee
Confidence              4456666789999999999999999988888778777776 8999999998888777665443

>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=2.5e-38  Score=272.71  Aligned_cols=284  Identities=21%  Similarity=0.368  Sum_probs=250.9

Q ss_pred             ccccceEEEEEeecCCCCCcEEEEeeCCCcEEEEcCCCCcceeeccccccceEEEEeCCCCCEEEEeeCCCeEEEEECCC
Q 021247           12 AHEESVWAVTWVPATETRPALLLTGSLDETVKLWRPDDMQLERTNTGHCLGVVSVAAHPSGIIAASASLDSFVRVFDVDT   91 (315)
Q Consensus        12 ~h~~~v~~v~~~~~~~~~~~~l~sgs~d~~v~~w~~~~~~~~~~~~~h~~~v~~~~~~~~g~~l~s~~~d~~i~~w~~~~   91 (315)
                      ..+..|-+++|.|..+    -++++-..|.|++||+..+.++..+.+|.++|..+.|||+..+++||+.|..|++|+..+
T Consensus         7 skSsRvKglsFHP~rP----wILtslHsG~IQlWDYRM~tli~rFdeHdGpVRgv~FH~~qplFVSGGDDykIkVWnYk~   82 (1202)
T KOG0292|consen    7 SKSSRVKGLSFHPKRP----WILTSLHSGVIQLWDYRMGTLIDRFDEHDGPVRGVDFHPTQPLFVSGGDDYKIKVWNYKT   82 (1202)
T ss_pred             cccccccceecCCCCC----EEEEeecCceeeeehhhhhhHHhhhhccCCccceeeecCCCCeEEecCCccEEEEEeccc
Confidence            4567899999999765    689999999999999999999999999999999999999999999999999999999999


Q ss_pred             CceeEEeeCCcccEEEEEECCCCCeEEEEecCCCeEEEEecCCcceeeeecCCCCCCCCCCccCCCCcceEEEEECCCCC
Q 021247           92 NASIATLEASPSEVWQMQFDPKGTTLAVAGGGSASVKLWDTATWNLIATLSIPRPEGLKPTDKSSSKKFVLSVAWSPDGR  171 (315)
Q Consensus        92 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~  171 (315)
                      .+++.++.+|.+-|..+.||+.-..+ +++++|.+|+||+..+.++++.++             +|..+|.|..|+|...
T Consensus        83 rrclftL~GHlDYVRt~~FHheyPWI-lSASDDQTIrIWNwqsr~~iavlt-------------GHnHYVMcAqFhptED  148 (1202)
T KOG0292|consen   83 RRCLFTLLGHLDYVRTVFFHHEYPWI-LSASDDQTIRIWNWQSRKCIAVLT-------------GHNHYVMCAQFHPTED  148 (1202)
T ss_pred             ceehhhhccccceeEEeeccCCCceE-EEccCCCeEEEEeccCCceEEEEe-------------cCceEEEeeccCCccc
Confidence            99999999999999999999987754 688999999999999999988774             5777899999999999


Q ss_pred             EEEEecCCCcEEEEEcccce-----------------------------eeeeecCCccceEEEEEcCCCCcEEEEEeCC
Q 021247          172 RIACGSMDGTISVFDVTRAK-----------------------------FLHHLEGHFMPVRSLVYSPVDPRVLFSASDD  222 (315)
Q Consensus       172 ~l~~~s~dg~i~i~d~~~~~-----------------------------~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d  222 (315)
                      .++++|.|.+|++||+...+                             ....+.+|...|+-++|+|.- .+++||++|
T Consensus       149 lIVSaSLDQTVRVWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHDRGVNwaAfhpTl-pliVSG~DD  227 (1202)
T KOG0292|consen  149 LIVSASLDQTVRVWDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHDRGVNWAAFHPTL-PLIVSGADD  227 (1202)
T ss_pred             eEEEecccceEEEEeecchhccCCCCCCchhhhhccccchhhcCCcCeeeeeeecccccccceEEecCCc-ceEEecCCc
Confidence            99999999999999974211                             113456899999999999954 499999999


Q ss_pred             CeEEEEeCCCCe--eEEEeecccccEEEEEEcCCCCeEEEEeCCCcEEEEecCccceehcccccccceEEEEEeeCCCEE
Q 021247          223 THVHMYDAEGKS--LVTAMSGHASWVLSVDASPDGAAITTGSSDRTVKLWDLNMRAAMQSMTNHTDQVWGVSFRPLGGRV  300 (315)
Q Consensus       223 ~~i~~wd~~~~~--~~~~~~~~~~~i~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l  300 (315)
                      +.|++|.+...+  .+....+|.+.|.++-|+|...+++|.|.|++|||||+..+..++++....+..|.++-+|..+ |
T Consensus       228 RqVKlWrmnetKaWEvDtcrgH~nnVssvlfhp~q~lIlSnsEDksirVwDm~kRt~v~tfrrendRFW~laahP~lN-L  306 (1202)
T KOG0292|consen  228 RQVKLWRMNETKAWEVDTCRGHYNNVSSVLFHPHQDLILSNSEDKSIRVWDMTKRTSVQTFRRENDRFWILAAHPELN-L  306 (1202)
T ss_pred             ceeeEEEeccccceeehhhhcccCCcceEEecCccceeEecCCCccEEEEecccccceeeeeccCCeEEEEEecCCcc-e
Confidence            999999987543  4567789999999999999999999999999999999999999999988889999999999987 5


Q ss_pred             EEEeCCCcEEEeecC
Q 021247          301 VSVSDDKSISLYEYS  315 (315)
Q Consensus       301 ~s~~~d~~i~i~~~~  315 (315)
                      ++++-|+-+.+|.++
T Consensus       307 fAAgHDsGm~VFkle  321 (1202)
T KOG0292|consen  307 FAAGHDSGMIVFKLE  321 (1202)
T ss_pred             eeeecCCceEEEEEc
Confidence            555666767787763

>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=100.00  E-value=9.2e-39  Score=270.43  Aligned_cols=301  Identities=26%  Similarity=0.404  Sum_probs=243.4

Q ss_pred             hhccccceEEEEEeecCCCCCcEEEEeeCCCcEEEEcCCCCcceeeccccccceEEEEeCCCCC--EEEEeeCCCeEEEE
Q 021247           10 ENAHEESVWAVTWVPATETRPALLLTGSLDETVKLWRPDDMQLERTNTGHCLGVVSVAAHPSGI--IAASASLDSFVRVF   87 (315)
Q Consensus        10 ~~~h~~~v~~v~~~~~~~~~~~~l~sgs~d~~v~~w~~~~~~~~~~~~~h~~~v~~~~~~~~g~--~l~s~~~d~~i~~w   87 (315)
                      ...|+.||..++|.|.+    .++++|+.|+.|++||+....+...++||.+.|.++.|+|+-+  +|++|+.|+++++|
T Consensus       101 Ka~He~Pvi~ma~~~~g----~LlAtggaD~~v~VWdi~~~~~th~fkG~gGvVssl~F~~~~~~~lL~sg~~D~~v~vw  176 (775)
T KOG0319|consen  101 KAIHEAPVITMAFDPTG----TLLATGGADGRVKVWDIKNGYCTHSFKGHGGVVSSLLFHPHWNRWLLASGATDGTVRVW  176 (775)
T ss_pred             hhccCCCeEEEEEcCCC----ceEEeccccceEEEEEeeCCEEEEEecCCCceEEEEEeCCccchhheeecCCCceEEEE
Confidence            34599999999999976    3899999999999999999999999999999999999999764  58899999999999


Q ss_pred             ECCCCc-eeEEeeCCcccEEEEEECCCCCeEEEEecCCCeEEEEecCCcceeeeecC----------CC-----------
Q 021247           88 DVDTNA-SIATLEASPSEVWQMQFDPKGTTLAVAGGGSASVKLWDTATWNLIATLSI----------PR-----------  145 (315)
Q Consensus        88 ~~~~~~-~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~----------~~-----------  145 (315)
                      |+++.. ++.+...|...|.++.+.+++..+ ++.+.|..+.+||+.+.+...+++.          +.           
T Consensus       177 nl~~~~tcl~~~~~H~S~vtsL~~~~d~~~~-ls~~RDkvi~vwd~~~~~~l~~lp~ye~~E~vv~l~~~~~~~~~~~~T  255 (775)
T KOG0319|consen  177 NLNDKRTCLHTMILHKSAVTSLAFSEDSLEL-LSVGRDKVIIVWDLVQYKKLKTLPLYESLESVVRLREELGGKGEYIIT  255 (775)
T ss_pred             EcccCchHHHHHHhhhhheeeeeeccCCceE-EEeccCcEEEEeehhhhhhhheechhhheeeEEEechhcCCcceEEEE
Confidence            999654 466778889999999999987654 5667888888888754322111110          00           


Q ss_pred             -----------------------CCC-------------------------------C-------------------CC-
Q 021247          146 -----------------------PEG-------------------------------L-------------------KP-  151 (315)
Q Consensus       146 -----------------------~~~-------------------------------~-------------------~~-  151 (315)
                                             +..                               .                   .+ 
T Consensus       256 aG~~g~~~~~d~es~~~~~~~~~~~~~e~~~~~~~~~~~~~l~vtaeQnl~l~d~~~l~i~k~ivG~ndEI~Dm~~lG~e  335 (775)
T KOG0319|consen  256 AGGSGVVQYWDSESGKCVYKQRQSDSEEIDHLLAIESMSQLLLVTAEQNLFLYDEDELTIVKQIVGYNDEILDMKFLGPE  335 (775)
T ss_pred             ecCCceEEEEecccchhhhhhccCCchhhhcceeccccCceEEEEccceEEEEEccccEEehhhcCCchhheeeeecCCc
Confidence                                   000                               0                   00 


Q ss_pred             -----------------------CccCCCCcceEEEEECCCCCEEEEecCCCcEEEEEcccce----eeeeecCCccceE
Q 021247          152 -----------------------TDKSSSKKFVLSVAWSPDGRRIACGSMDGTISVFDVTRAK----FLHHLEGHFMPVR  204 (315)
Q Consensus       152 -----------------------~~~~~~~~~i~~~~~~~~~~~l~~~s~dg~i~i~d~~~~~----~~~~~~~~~~~v~  204 (315)
                                             .-..+|...|.++....+|.+|++|+.|.++++|.+..+.    ++....+|+..|.
T Consensus       336 ~~~laVATNs~~lr~y~~~~~~c~ii~GH~e~vlSL~~~~~g~llat~sKD~svilWr~~~~~~~~~~~a~~~gH~~svg  415 (775)
T KOG0319|consen  336 ESHLAVATNSPELRLYTLPTSYCQIIPGHTEAVLSLDVWSSGDLLATGSKDKSVILWRLNNNCSKSLCVAQANGHTNSVG  415 (775)
T ss_pred             cceEEEEeCCCceEEEecCCCceEEEeCchhheeeeeecccCcEEEEecCCceEEEEEecCCcchhhhhhhhcccccccc
Confidence                                   0012345556677755667899999999999999884433    3455678999999


Q ss_pred             EEEEcCCCCcEEEEEeCCCeEEEEeCCCCe-----eEE----EeecccccEEEEEEcCCCCeEEEEeCCCcEEEEecCcc
Q 021247          205 SLVYSPVDPRVLFSASDDTHVHMYDAEGKS-----LVT----AMSGHASWVLSVDASPDGAAITTGSSDRTVKLWDLNMR  275 (315)
Q Consensus       205 ~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~-----~~~----~~~~~~~~i~~~~~~~~~~~l~s~~~d~~i~iwd~~~~  275 (315)
                      +++++.....+|++++.|+++++|++...+     .+.    ....|...|++++++|+..+++|||.|.+.+||++...
T Consensus       416 ava~~~~~asffvsvS~D~tlK~W~l~~s~~~~~~~~~~~~~t~~aHdKdIN~Vaia~ndkLiAT~SqDktaKiW~le~~  495 (775)
T KOG0319|consen  416 AVAGSKLGASFFVSVSQDCTLKLWDLPKSKETAFPIVLTCRYTERAHDKDINCVAIAPNDKLIATGSQDKTAKIWDLEQL  495 (775)
T ss_pred             eeeecccCccEEEEecCCceEEEecCCCcccccccceehhhHHHHhhcccccceEecCCCceEEecccccceeeecccCc
Confidence            999988788899999999999999987521     111    23468999999999999999999999999999999999


Q ss_pred             ceehcccccccceEEEEEeeCCCEEEEEeCCCcEEEeecC
Q 021247          276 AAMQSMTNHTDQVWGVSFRPLGGRVVSVSDDKSISLYEYS  315 (315)
Q Consensus       276 ~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~i~i~~~~  315 (315)
                      ..+.++.+|...||+|.|+|+.+.++++|.|++|+||.++
T Consensus       496 ~l~~vLsGH~RGvw~V~Fs~~dq~laT~SgD~TvKIW~is  535 (775)
T KOG0319|consen  496 RLLGVLSGHTRGVWCVSFSKNDQLLATCSGDKTVKIWSIS  535 (775)
T ss_pred             eEEEEeeCCccceEEEEeccccceeEeccCCceEEEEEec
Confidence            9999999999999999999999999999999999999874

>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]

Probab=100.00  E-value=3.2e-38  Score=248.38  Aligned_cols=291  Identities=28%  Similarity=0.409  Sum_probs=234.9

Q ss_pred             ccccceEEEEEeecCCCCCcEEEEeeCCCcEEEEcCCCCcceeeccccccceEEEEeCC---CCCEEEEeeCCCeEEEEE
Q 021247           12 AHEESVWAVTWVPATETRPALLLTGSLDETVKLWRPDDMQLERTNTGHCLGVVSVAAHP---SGIIAASASLDSFVRVFD   88 (315)
Q Consensus        12 ~h~~~v~~v~~~~~~~~~~~~l~sgs~d~~v~~w~~~~~~~~~~~~~h~~~v~~~~~~~---~g~~l~s~~~d~~i~~w~   88 (315)
                      -|++.|.+|.-.+      .-++||++||.+++|+. .++..+++.||.+++.++.+..   ....+++++.|.++++|.
T Consensus       103 ~hdDWVSsv~~~~------~~IltgsYDg~~riWd~-~Gk~~~~~~Ght~~ik~v~~v~~n~~~~~fvsas~Dqtl~Lw~  175 (423)
T KOG0313|consen  103 LHDDWVSSVKGAS------KWILTGSYDGTSRIWDL-KGKSIKTIVGHTGPIKSVAWVIKNSSSCLFVSASMDQTLRLWK  175 (423)
T ss_pred             cchhhhhhhcccC------ceEEEeecCCeeEEEec-CCceEEEEecCCcceeeeEEEecCCccceEEEecCCceEEEEE
Confidence            5778888876552      36999999999999986 5677888999999999877643   334699999999999999


Q ss_pred             CCCCcee----EEeeCCcccEEEEEECCCCCeEEEEecCCCeEEEEecCCc--ceeeeecCCC-------CC---CCCCC
Q 021247           89 VDTNASI----ATLEASPSEVWQMQFDPKGTTLAVAGGGSASVKLWDTATW--NLIATLSIPR-------PE---GLKPT  152 (315)
Q Consensus        89 ~~~~~~~----~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~~d~~~~--~~~~~~~~~~-------~~---~~~~~  152 (315)
                      .+.+...    ..-.+|...|.+++..+++..+ ++|+.|.+|++|+..+.  ..+......+       ++   ..+..
T Consensus       176 ~~~~~~~~~~~~~~~GHk~~V~sVsv~~sgtr~-~SgS~D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~P~v  254 (423)
T KOG0313|consen  176 WNVGENKVKALKVCRGHKRSVDSVSVDSSGTRF-CSGSWDTMLKIWSVETDEEDELESSSNRRRKKQKREKEGGTRTPLV  254 (423)
T ss_pred             ecCchhhhhHHhHhcccccceeEEEecCCCCeE-EeecccceeeecccCCCccccccccchhhhhhhhhhhcccccCceE
Confidence            9887543    2335899999999999998854 78999999999993221  1111111100       00   11112


Q ss_pred             ccCCCCcceEEEEECCCCCEEEEecCCCcEEEEEcccceeeeeecCCccceEEEEEcCCCCcEEEEEeCCCeEEEEeCCC
Q 021247          153 DKSSSKKFVLSVAWSPDGRRIACGSMDGTISVFDVTRAKFLHHLEGHFMPVRSLVYSPVDPRVLFSASDDTHVHMYDAEG  232 (315)
Q Consensus       153 ~~~~~~~~i~~~~~~~~~~~l~~~s~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~  232 (315)
                      ...+|...|..+.|++ ...+++++.|.+|+.||+.++.....+.+ ..+..++..+| ...+|++|+.|..|++||.+.
T Consensus       255 tl~GHt~~Vs~V~w~d-~~v~yS~SwDHTIk~WDletg~~~~~~~~-~ksl~~i~~~~-~~~Ll~~gssdr~irl~DPR~  331 (423)
T KOG0313|consen  255 TLEGHTEPVSSVVWSD-ATVIYSVSWDHTIKVWDLETGGLKSTLTT-NKSLNCISYSP-LSKLLASGSSDRHIRLWDPRT  331 (423)
T ss_pred             EecccccceeeEEEcC-CCceEeecccceEEEEEeecccceeeeec-CcceeEeeccc-ccceeeecCCCCceeecCCCC
Confidence            3457888899999998 67889999999999999999998877764 45789999998 678999999999999999985


Q ss_pred             C---eeEEEeecccccEEEEEEcCCC-CeEEEEeCCCcEEEEecCccc-eehcccccccceEEEEEeeCCCEEEEEeCCC
Q 021247          233 K---SLVTAMSGHASWVLSVDASPDG-AAITTGSSDRTVKLWDLNMRA-AMQSMTNHTDQVWGVSFRPLGGRVVSVSDDK  307 (315)
Q Consensus       233 ~---~~~~~~~~~~~~i~~~~~~~~~-~~l~s~~~d~~i~iwd~~~~~-~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~  307 (315)
                      +   -....+.+|.++|.++.|+|.. ..|++|+.|+++++||+++.+ ++..+.+|.+.|.++.|.. +..|++||.|.
T Consensus       332 ~~gs~v~~s~~gH~nwVssvkwsp~~~~~~~S~S~D~t~klWDvRS~k~plydI~~h~DKvl~vdW~~-~~~IvSGGaD~  410 (423)
T KOG0313|consen  332 GDGSVVSQSLIGHKNWVSSVKWSPTNEFQLVSGSYDNTVKLWDVRSTKAPLYDIAGHNDKVLSVDWNE-GGLIVSGGADN  410 (423)
T ss_pred             CCCceeEEeeecchhhhhheecCCCCceEEEEEecCCeEEEEEeccCCCcceeeccCCceEEEEeccC-CceEEeccCcc
Confidence            4   3456788999999999999964 578999999999999999866 8999999999999999986 56899999999


Q ss_pred             cEEEeec
Q 021247          308 SISLYEY  314 (315)
Q Consensus       308 ~i~i~~~  314 (315)
                      +|+||..
T Consensus       411 ~l~i~~~  417 (423)
T KOG0313|consen  411 KLRIFKG  417 (423)
T ss_pred             eEEEecc
Confidence            9999974

>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=100.00  E-value=6.2e-38  Score=265.93  Aligned_cols=293  Identities=27%  Similarity=0.420  Sum_probs=253.3

Q ss_pred             hhccccceEEEEEeecCCCCCcEEEEeeCCCcEEEEcCCCCcceeeccccccceEEEEeCCCCCEEEEeeCCCeEEEEEC
Q 021247           10 ENAHEESVWAVTWVPATETRPALLLTGSLDETVKLWRPDDMQLERTNTGHCLGVVSVAAHPSGIIAASASLDSFVRVFDV   89 (315)
Q Consensus        10 ~~~h~~~v~~v~~~~~~~~~~~~l~sgs~d~~v~~w~~~~~~~~~~~~~h~~~v~~~~~~~~g~~l~s~~~d~~i~~w~~   89 (315)
                      ..+|+.+|-+++++.+..    +++| +..+++++|+.++.++.+++..  +.+.+..|.|.+.+++.|...|.+.++|+
T Consensus       369 ~~GHR~dVRsl~vS~d~~----~~~S-ga~~SikiWn~~t~kciRTi~~--~y~l~~~Fvpgd~~Iv~G~k~Gel~vfdl  441 (888)
T KOG0306|consen  369 IGGHRSDVRSLCVSSDSI----LLAS-GAGESIKIWNRDTLKCIRTITC--GYILASKFVPGDRYIVLGTKNGELQVFDL  441 (888)
T ss_pred             eccchhheeEEEeecCce----eeee-cCCCcEEEEEccCcceeEEecc--ccEEEEEecCCCceEEEeccCCceEEEEe
Confidence            369999999999997653    3444 4568999999999999888764  37889999999999999999999999999


Q ss_pred             CCCceeEEeeCCcccEEEEEECCCCCeEEEEecCCCeEEEEecCCcceeeeecCCCCCCCCCC--ccCCCCcceEEEEEC
Q 021247           90 DTNASIATLEASPSEVWQMQFDPKGTTLAVAGGGSASVKLWDTATWNLIATLSIPRPEGLKPT--DKSSSKKFVLSVAWS  167 (315)
Q Consensus        90 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~i~~~~~~  167 (315)
                      .....+.+++.|.+.+|.++..|++..+ ++|+.|.+|++||..-.   ...+..+..-+...  ..-.-...|.|+.+|
T Consensus       442 aS~~l~Eti~AHdgaIWsi~~~pD~~g~-vT~saDktVkfWdf~l~---~~~~gt~~k~lsl~~~rtLel~ddvL~v~~S  517 (888)
T KOG0306|consen  442 ASASLVETIRAHDGAIWSISLSPDNKGF-VTGSADKTVKFWDFKLV---VSVPGTQKKVLSLKHTRTLELEDDVLCVSVS  517 (888)
T ss_pred             ehhhhhhhhhccccceeeeeecCCCCce-EEecCCcEEEEEeEEEE---eccCcccceeeeeccceEEeccccEEEEEEc
Confidence            9999999999999999999999999876 68899999999997421   11100000000000  001123458999999


Q ss_pred             CCCCEEEEecCCCcEEEEEcccceeeeeecCCccceEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCeeEEEeecccccEE
Q 021247          168 PDGRRIACGSMDGTISVFDVTRAKFLHHLEGHFMPVRSLVYSPVDPRVLFSASDDTHVHMYDAEGKSLVTAMSGHASWVL  247 (315)
Q Consensus       168 ~~~~~l~~~s~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~i~  247 (315)
                      |||++|+++-.|+++++|-+.+.+..-.+.||.-||.++..+| ++.++++|+.|..|++|-++-+.+-+.+-+|.+.|+
T Consensus       518 pdgk~LaVsLLdnTVkVyflDtlKFflsLYGHkLPV~smDIS~-DSklivTgSADKnVKiWGLdFGDCHKS~fAHdDSvm  596 (888)
T KOG0306|consen  518 PDGKLLAVSLLDNTVKVYFLDTLKFFLSLYGHKLPVLSMDISP-DSKLIVTGSADKNVKIWGLDFGDCHKSFFAHDDSVM  596 (888)
T ss_pred             CCCcEEEEEeccCeEEEEEecceeeeeeecccccceeEEeccC-CcCeEEeccCCCceEEeccccchhhhhhhcccCcee
Confidence            9999999999999999999999999999999999999999998 789999999999999999999989888999999999


Q ss_pred             EEEEcCCCCeEEEEeCCCcEEEEecCccceehcccccccceEEEEEeeCCCEEEEEeCCCcEEEeec
Q 021247          248 SVDASPDGAAITTGSSDRTVKLWDLNMRAAMQSMTNHTDQVWGVSFRPLGGRVVSVSDDKSISLYEY  314 (315)
Q Consensus       248 ~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~i~i~~~  314 (315)
                      ++.|-|....+.|+|.|+.|+-||....+.++.+.+|...||+++.+|+|.+++++|.|.+||+|.-
T Consensus       597 ~V~F~P~~~~FFt~gKD~kvKqWDg~kFe~iq~L~~H~~ev~cLav~~~G~~vvs~shD~sIRlwE~  663 (888)
T KOG0306|consen  597 SVQFLPKTHLFFTCGKDGKVKQWDGEKFEEIQKLDGHHSEVWCLAVSPNGSFVVSSSHDKSIRLWER  663 (888)
T ss_pred             EEEEcccceeEEEecCcceEEeechhhhhhheeeccchheeeeeEEcCCCCeEEeccCCceeEeeec
Confidence            9999999999999999999999999999999999999999999999999999999999999999974

>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]

Probab=100.00  E-value=1.7e-37  Score=233.92  Aligned_cols=286  Identities=20%  Similarity=0.302  Sum_probs=236.6

Q ss_pred             hhhccccceEEEEEeecCCCCCcEEEEeeCCCcEEEEcCCCCcceeeccccccceEEEEeCCCCCEEEEeeCCCeEEEEE
Q 021247            9 VENAHEESVWAVTWVPATETRPALLLTGSLDETVKLWRPDDMQLERTNTGHCLGVVSVAAHPSGIIAASASLDSFVRVFD   88 (315)
Q Consensus         9 ~~~~h~~~v~~v~~~~~~~~~~~~l~sgs~d~~v~~w~~~~~~~~~~~~~h~~~v~~~~~~~~g~~l~s~~~d~~i~~w~   88 (315)
                      .+.+|+.+++.+.+...+.    +|+|++.|.++.+|-..+++.+-...||++.|.++.++.+...+++|+.|.++++||
T Consensus         5 ~l~GHERplTqiKyN~eGD----LlFscaKD~~~~vw~s~nGerlGty~GHtGavW~~Did~~s~~liTGSAD~t~kLWD   80 (327)
T KOG0643|consen    5 LLQGHERPLTQIKYNREGD----LLFSCAKDSTPTVWYSLNGERLGTYDGHTGAVWCCDIDWDSKHLITGSADQTAKLWD   80 (327)
T ss_pred             ccccCccccceEEecCCCc----EEEEecCCCCceEEEecCCceeeeecCCCceEEEEEecCCcceeeeccccceeEEEE
Confidence            4578999999999987765    899999999999998888999999999999999999999999999999999999999


Q ss_pred             CCCCceeEEeeCCcccEEEEEECCCCCeEEEEec----CCCeEEEEecCCcc-------eeeeecCCCCCCCCCCccCCC
Q 021247           89 VDTNASIATLEASPSEVWQMQFDPKGTTLAVAGG----GSASVKLWDTATWN-------LIATLSIPRPEGLKPTDKSSS  157 (315)
Q Consensus        89 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~----~d~~i~~~d~~~~~-------~~~~~~~~~~~~~~~~~~~~~  157 (315)
                      +++++.+.+++. +.+|..+.|++.++.++++..    ..+.|.++|++...       +...+..             +
T Consensus        81 v~tGk~la~~k~-~~~Vk~~~F~~~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~t-------------~  146 (327)
T KOG0643|consen   81 VETGKQLATWKT-NSPVKRVDFSFGGNLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKIPT-------------P  146 (327)
T ss_pred             cCCCcEEEEeec-CCeeEEEeeccCCcEEEEEehhhcCcceEEEEEEccCChhhhcccCceEEecC-------------C
Confidence            999999988874 578999999999998776542    24679999988422       1222211             1


Q ss_pred             CcceEEEEECCCCCEEEEecCCCcEEEEEcccce-eeeeecCCccceEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCeeE
Q 021247          158 KKFVLSVAWSPDGRRIACGSMDGTISVFDVTRAK-FLHHLEGHFMPVRSLVYSPVDPRVLFSASDDTHVHMYDAEGKSLV  236 (315)
Q Consensus       158 ~~~i~~~~~~~~~~~l~~~s~dg~i~i~d~~~~~-~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~  236 (315)
                      ...++.+-|.|.+++|++|.+||.|.+||+++++ .+..-..|...|+.+.++| +..++++++.|.+-++||..+.+++
T Consensus       147 ~skit~a~Wg~l~~~ii~Ghe~G~is~~da~~g~~~v~s~~~h~~~Ind~q~s~-d~T~FiT~s~Dttakl~D~~tl~v~  225 (327)
T KOG0643|consen  147 DSKITSALWGPLGETIIAGHEDGSISIYDARTGKELVDSDEEHSSKINDLQFSR-DRTYFITGSKDTTAKLVDVRTLEVL  225 (327)
T ss_pred             ccceeeeeecccCCEEEEecCCCcEEEEEcccCceeeechhhhccccccccccC-CcceEEecccCccceeeeccceeeE
Confidence            2348899999999999999999999999999975 4556678999999999998 6789999999999999999999888


Q ss_pred             EEeecccccEEEEEEcCCCCeEEEEeCCCcE--------------EEEecCccceehcccccccceEEEEEeeCCCEEEE
Q 021247          237 TAMSGHASWVLSVDASPDGAAITTGSSDRTV--------------KLWDLNMRAAMQSMTNHTDQVWGVSFRPLGGRVVS  302 (315)
Q Consensus       237 ~~~~~~~~~i~~~~~~~~~~~l~s~~~d~~i--------------~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s  302 (315)
                      +.+.. ..++++.+++|....++.|+....-              |+|++-..+.+..+.+|-++|++|+|||+|+..++
T Consensus       226 Kty~t-e~PvN~aaisP~~d~VilgGGqeA~dVTTT~~r~GKFEArFyh~i~eEEigrvkGHFGPINsvAfhPdGksYsS  304 (327)
T KOG0643|consen  226 KTYTT-ERPVNTAAISPLLDHVILGGGQEAMDVTTTSTRAGKFEARFYHLIFEEEIGRVKGHFGPINSVAFHPDGKSYSS  304 (327)
T ss_pred             EEeee-cccccceecccccceEEecCCceeeeeeeecccccchhhhHHHHHHHHHhccccccccCcceeEECCCCccccc
Confidence            88764 4578999999976666555543322              22222223345557899999999999999999999


Q ss_pred             EeCCCcEEEeec
Q 021247          303 VSDDKSISLYEY  314 (315)
Q Consensus       303 ~~~d~~i~i~~~  314 (315)
                      ||.||.|||.-+
T Consensus       305 GGEDG~VR~h~F  316 (327)
T KOG0643|consen  305 GGEDGYVRLHHF  316 (327)
T ss_pred             CCCCceEEEEEe
Confidence            999999999754

>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=100.00  E-value=3.3e-36  Score=255.66  Aligned_cols=298  Identities=24%  Similarity=0.346  Sum_probs=250.1

Q ss_pred             hccccceEEEEEeecCCCCCcEEEEeeCCCcEEEEcCCCCcc--eeeccccccceEEEEeCCCCCEEEEeeCCCeEEEEE
Q 021247           11 NAHEESVWAVTWVPATETRPALLLTGSLDETVKLWRPDDMQL--ERTNTGHCLGVVSVAAHPSGIIAASASLDSFVRVFD   88 (315)
Q Consensus        11 ~~h~~~v~~v~~~~~~~~~~~~l~sgs~d~~v~~w~~~~~~~--~~~~~~h~~~v~~~~~~~~g~~l~s~~~d~~i~~w~   88 (315)
                      .+|-++|.++.|+.+.+    +|++||.|-++++|..+..+-  ...+.+|..+|..+.|..+..-+.+.+.||.+.+|.
T Consensus       142 ~g~fddi~si~Ws~DSr----~l~~gsrD~s~rl~~v~~~k~~~~~~l~gHkd~VvacfF~~~~~~l~tvskdG~l~~W~  217 (893)
T KOG0291|consen  142 LGHFDDITSIDWSDDSR----LLVTGSRDLSARLFGVDGNKNLFTYALNGHKDYVVACFFGANSLDLYTVSKDGALFVWT  217 (893)
T ss_pred             cCCccceeEEEeccCCc----eEEeccccceEEEEEeccccccceEeccCCCcceEEEEeccCcceEEEEecCceEEEEE
Confidence            58999999999999876    799999999999999876554  556789999999999999999999999999999998


Q ss_pred             CCCC-----------------------ce-----eE------EeeCCcccEEEEEECCCCCeEEEEecCCCeEEEEecCC
Q 021247           89 VDTN-----------------------AS-----IA------TLEASPSEVWQMQFDPKGTTLAVAGGGSASVKLWDTAT  134 (315)
Q Consensus        89 ~~~~-----------------------~~-----~~------~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~~d~~~  134 (315)
                      ....                       +.     +.      -+...+..+.+.+||+..+ ++++|=..|...+|++..
T Consensus       218 ~~~~P~~~~~~~kd~eg~~d~~~~~~~Eek~~~~~~~k~~k~~ln~~~~kvtaa~fH~~t~-~lvvgFssG~f~LyelP~  296 (893)
T KOG0291|consen  218 CDLRPPELDKAEKDEEGSDDEEMDEDGEEKTHKIFWYKTKKHYLNQNSSKVTAAAFHKGTN-LLVVGFSSGEFGLYELPD  296 (893)
T ss_pred             ecCCCcccccccccccccccccccccchhhhcceEEEEEEeeeecccccceeeeeccCCce-EEEEEecCCeeEEEecCC
Confidence            8711                       00     00      0111235688899998654 667888889999999988


Q ss_pred             cceeeeecCCCCC------------------------------CCCCCccCCCCcceEEEEECCCCCEEEEecCCCcEEE
Q 021247          135 WNLIATLSIPRPE------------------------------GLKPTDKSSSKKFVLSVAWSPDGRRIACGSMDGTISV  184 (315)
Q Consensus       135 ~~~~~~~~~~~~~------------------------------~~~~~~~~~~~~~i~~~~~~~~~~~l~~~s~dg~i~i  184 (315)
                      .++++.+.+....                              ......+.+|...+++++++|||+++++|+.||.|++
T Consensus       297 f~lih~LSis~~~I~t~~~N~tGDWiA~g~~klgQLlVweWqsEsYVlKQQgH~~~i~~l~YSpDgq~iaTG~eDgKVKv  376 (893)
T KOG0291|consen  297 FNLIHSLSISDQKILTVSFNSTGDWIAFGCSKLGQLLVWEWQSESYVLKQQGHSDRITSLAYSPDGQLIATGAEDGKVKV  376 (893)
T ss_pred             ceEEEEeecccceeeEEEecccCCEEEEcCCccceEEEEEeeccceeeeccccccceeeEEECCCCcEEEeccCCCcEEE
Confidence            8777766554221                              0112223456777999999999999999999999999


Q ss_pred             EEcccceeeeeecCCccceEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCeeEEEeec-ccccEEEEEEcCCCCeEEEEeC
Q 021247          185 FDVTRAKFLHHLEGHFMPVRSLVYSPVDPRVLFSASDDTHVHMYDAEGKSLVTAMSG-HASWVLSVDASPDGAAITTGSS  263 (315)
Q Consensus       185 ~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~-~~~~i~~~~~~~~~~~l~s~~~  263 (315)
                      ||...+-+..++..|+..|+.+.|+. .++.+++++.||+++.||++....-+.+.. ......+++.+|.|.++.+|+.
T Consensus       377 Wn~~SgfC~vTFteHts~Vt~v~f~~-~g~~llssSLDGtVRAwDlkRYrNfRTft~P~p~QfscvavD~sGelV~AG~~  455 (893)
T KOG0291|consen  377 WNTQSGFCFVTFTEHTSGVTAVQFTA-RGNVLLSSSLDGTVRAWDLKRYRNFRTFTSPEPIQFSCVAVDPSGELVCAGAQ  455 (893)
T ss_pred             EeccCceEEEEeccCCCceEEEEEEe-cCCEEEEeecCCeEEeeeecccceeeeecCCCceeeeEEEEcCCCCEEEeecc
Confidence            99999999999999999999999997 788999999999999999988766666543 3344678999999999999999


Q ss_pred             CCc-EEEEecCccceehcccccccceEEEEEeeCCCEEEEEeCCCcEEEeec
Q 021247          264 DRT-VKLWDLNMRAAMQSMTNHTDQVWGVSFRPLGGRVVSVSDDKSISLYEY  314 (315)
Q Consensus       264 d~~-i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~i~i~~~  314 (315)
                      |.. |.+|++.+|+.+..+.+|+++|.+++|+|.|..|+++|.|++||+|+.
T Consensus       456 d~F~IfvWS~qTGqllDiLsGHEgPVs~l~f~~~~~~LaS~SWDkTVRiW~i  507 (893)
T KOG0291|consen  456 DSFEIFVWSVQTGQLLDILSGHEGPVSGLSFSPDGSLLASGSWDKTVRIWDI  507 (893)
T ss_pred             ceEEEEEEEeecCeeeehhcCCCCcceeeEEccccCeEEeccccceEEEEEe
Confidence            975 999999999999999999999999999999999999999999999986

>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]

Probab=100.00  E-value=9.8e-38  Score=244.12  Aligned_cols=247  Identities=26%  Similarity=0.377  Sum_probs=227.1

Q ss_pred             cceeeccccccceEEEEeCCCCCEEEEeeCCCeEEEEECCCCceeEEeeCCcccEEEEEECCCCCeEEEEecCCCeEEEE
Q 021247           51 QLERTNTGHCLGVVSVAAHPSGIIAASASLDSFVRVFDVDTNASIATLEASPSEVWQMQFDPKGTTLAVAGGGSASVKLW  130 (315)
Q Consensus        51 ~~~~~~~~h~~~v~~~~~~~~g~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~~  130 (315)
                      ++.+.+.+|.+-|.++++.|.+..+++|+.|++|+|||+.+++...++.+|...|..+++++...++ ++++.|++|+.|
T Consensus       142 Kl~rVi~gHlgWVr~vavdP~n~wf~tgs~DrtikIwDlatg~LkltltGhi~~vr~vavS~rHpYl-Fs~gedk~VKCw  220 (460)
T KOG0285|consen  142 KLYRVISGHLGWVRSVAVDPGNEWFATGSADRTIKIWDLATGQLKLTLTGHIETVRGVAVSKRHPYL-FSAGEDKQVKCW  220 (460)
T ss_pred             eehhhhhhccceEEEEeeCCCceeEEecCCCceeEEEEcccCeEEEeecchhheeeeeeecccCceE-EEecCCCeeEEE
Confidence            3455678999999999999999999999999999999999999999999999999999999987765 678899999999


Q ss_pred             ecCCcceeeeecCCCCCCCCCCccCCCCcceEEEEECCCCCEEEEecCCCcEEEEEcccceeeeeecCCccceEEEEEcC
Q 021247          131 DTATWNLIATLSIPRPEGLKPTDKSSSKKFVLSVAWSPDGRRIACGSMDGTISVFDVTRAKFLHHLEGHFMPVRSLVYSP  210 (315)
Q Consensus       131 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~s~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~  210 (315)
                      |+...+.+..+             .+|-..|.+++.+|.-+.|++|+.|..+++||+++...+..+.+|..+|..+.+.|
T Consensus       221 DLe~nkvIR~Y-------------hGHlS~V~~L~lhPTldvl~t~grDst~RvWDiRtr~~V~~l~GH~~~V~~V~~~~  287 (460)
T KOG0285|consen  221 DLEYNKVIRHY-------------HGHLSGVYCLDLHPTLDVLVTGGRDSTIRVWDIRTRASVHVLSGHTNPVASVMCQP  287 (460)
T ss_pred             echhhhhHHHh-------------ccccceeEEEeccccceeEEecCCcceEEEeeecccceEEEecCCCCcceeEEeec
Confidence            99987776655             34556699999999999999999999999999999999999999999999999999


Q ss_pred             CCCcEEEEEeCCCeEEEEeCCCCeeEEEeecccccEEEEEEcCCCCeEEEEeCCCcEEEEecCccceehcccccccceEE
Q 021247          211 VDPRVLFSASDDTHVHMYDAEGKSLVTAMSGHASWVLSVDASPDGAAITTGSSDRTVKLWDLNMRAAMQSMTNHTDQVWG  290 (315)
Q Consensus       211 ~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~  290 (315)
                      .++ .+++|+.|++|++||+..++-+..+..|...+.+++.+|....+++++.|. |+-|++..+..++.+.+|+..+++
T Consensus       288 ~dp-qvit~S~D~tvrlWDl~agkt~~tlt~hkksvral~lhP~e~~fASas~dn-ik~w~~p~g~f~~nlsgh~~iint  365 (460)
T KOG0285|consen  288 TDP-QVITGSHDSTVRLWDLRAGKTMITLTHHKKSVRALCLHPKENLFASASPDN-IKQWKLPEGEFLQNLSGHNAIINT  365 (460)
T ss_pred             CCC-ceEEecCCceEEEeeeccCceeEeeecccceeeEEecCCchhhhhccCCcc-ceeccCCccchhhccccccceeee
Confidence            776 578999999999999999999999999999999999999999999999886 899999999999999999999999


Q ss_pred             EEEeeCCCEEEEEeCCCcEEEeec
Q 021247          291 VSFRPLGGRVVSVSDDKSISLYEY  314 (315)
Q Consensus       291 ~~~s~~~~~l~s~~~d~~i~i~~~  314 (315)
                      ++...|| .+++|++.|.|..||+
T Consensus       366 l~~nsD~-v~~~G~dng~~~fwdw  388 (460)
T KOG0285|consen  366 LSVNSDG-VLVSGGDNGSIMFWDW  388 (460)
T ss_pred             eeeccCc-eEEEcCCceEEEEEec
Confidence            9998875 8999999999999997

>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]

Probab=100.00  E-value=1.2e-36  Score=227.09  Aligned_cols=261  Identities=24%  Similarity=0.394  Sum_probs=219.9

Q ss_pred             ccceEEEEEeecCCCCCcEEEEeeCCCcEEEEcCCCCc--ceeeccccccceEEEEeCCCCCEEEEeeCCCeEEEEECCC
Q 021247           14 EESVWAVTWVPATETRPALLLTGSLDETVKLWRPDDMQ--LERTNTGHCLGVVSVAAHPSGIIAASASLDSFVRVFDVDT   91 (315)
Q Consensus        14 ~~~v~~v~~~~~~~~~~~~l~sgs~d~~v~~w~~~~~~--~~~~~~~h~~~v~~~~~~~~g~~l~s~~~d~~i~~w~~~~   91 (315)
                      +..|+.++-.|+..    +|++|+ .-.|++||....+  ....+.+|+.-|.++.|..+|+.+++|+.||++||||++.
T Consensus        40 dsqVNrLeiTpdk~----~LAaa~-~qhvRlyD~~S~np~Pv~t~e~h~kNVtaVgF~~dgrWMyTgseDgt~kIWdlR~  114 (311)
T KOG0315|consen   40 DSQVNRLEITPDKK----DLAAAG-NQHVRLYDLNSNNPNPVATFEGHTKNVTAVGFQCDGRWMYTGSEDGTVKIWDLRS  114 (311)
T ss_pred             ccceeeEEEcCCcc----hhhhcc-CCeeEEEEccCCCCCceeEEeccCCceEEEEEeecCeEEEecCCCceEEEEeccC
Confidence            34789999888765    355555 5789999987544  4667889999999999999999999999999999999999


Q ss_pred             CceeEEeeCCcccEEEEEECCCCCeEEEEecCCCeEEEEecCCcceeeeecCCCCCCCCCCccCCCCcceEEEEECCCCC
Q 021247           92 NASIATLEASPSEVWQMQFDPKGTTLAVAGGGSASVKLWDTATWNLIATLSIPRPEGLKPTDKSSSKKFVLSVAWSPDGR  171 (315)
Q Consensus        92 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~  171 (315)
                      ..+.+.++ +..+|.++..+|+...+ ++|..+|.|++||+........+ +|+.           ...|.++...|+|.
T Consensus       115 ~~~qR~~~-~~spVn~vvlhpnQteL-is~dqsg~irvWDl~~~~c~~~l-iPe~-----------~~~i~sl~v~~dgs  180 (311)
T KOG0315|consen  115 LSCQRNYQ-HNSPVNTVVLHPNQTEL-ISGDQSGNIRVWDLGENSCTHEL-IPED-----------DTSIQSLTVMPDGS  180 (311)
T ss_pred             cccchhcc-CCCCcceEEecCCcceE-EeecCCCcEEEEEccCCcccccc-CCCC-----------CcceeeEEEcCCCc
Confidence            66655555 56999999999987765 57889999999999864333322 1111           13489999999999


Q ss_pred             EEEEecCCCcEEEEEcccc------eeeeeecCCccceEEEEEcCCCCcEEEEEeCCCeEEEEeCCCC-eeEEEeecccc
Q 021247          172 RIACGSMDGTISVFDVTRA------KFLHHLEGHFMPVRSLVYSPVDPRVLFSASDDTHVHMYDAEGK-SLVTAMSGHAS  244 (315)
Q Consensus       172 ~l~~~s~dg~i~i~d~~~~------~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~-~~~~~~~~~~~  244 (315)
                      +++++...|..++|++.+.      .++.+++.|+.-+..+.++| +.++|++++.|.+++||+.++. +.-..+.+|..
T Consensus       181 ml~a~nnkG~cyvW~l~~~~~~s~l~P~~k~~ah~~~il~C~lSP-d~k~lat~ssdktv~iwn~~~~~kle~~l~gh~r  259 (311)
T KOG0315|consen  181 MLAAANNKGNCYVWRLLNHQTASELEPVHKFQAHNGHILRCLLSP-DVKYLATCSSDKTVKIWNTDDFFKLELVLTGHQR  259 (311)
T ss_pred             EEEEecCCccEEEEEccCCCccccceEhhheecccceEEEEEECC-CCcEEEeecCCceEEEEecCCceeeEEEeecCCc
Confidence            9999999999999998654      34567788999999999999 7889999999999999999887 55567789999


Q ss_pred             cEEEEEEcCCCCeEEEEeCCCcEEEEecCccceehcccccccceEEEEEe
Q 021247          245 WVLSVDASPDGAAITTGSSDRTVKLWDLNMRAAMQSMTNHTDQVWGVSFR  294 (315)
Q Consensus       245 ~i~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s  294 (315)
                      |+++.+||.++++|+||+.|+.+++|++..++.+.+..+|-....+++..
T Consensus       260 WvWdc~FS~dg~YlvTassd~~~rlW~~~~~k~v~qy~gh~K~~vc~~ln  309 (311)
T KOG0315|consen  260 WVWDCAFSADGEYLVTASSDHTARLWDLSAGKEVRQYQGHHKAAVCVALN  309 (311)
T ss_pred             eEEeeeeccCccEEEecCCCCceeecccccCceeeecCCcccccEEEEee
Confidence            99999999999999999999999999999999999999998887777754

>KOG0295 consensus WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=8.2e-38  Score=244.84  Aligned_cols=247  Identities=28%  Similarity=0.445  Sum_probs=223.2

Q ss_pred             eeccccccceEEEEeCCCCCEEEEeeCCCeEEEEECCCCceeEEeeCCcccEEEEEECCCCCeEEEEecCCCeEEEEecC
Q 021247           54 RTNTGHCLGVVSVAAHPSGIIAASASLDSFVRVFDVDTNASIATLEASPSEVWQMQFDPKGTTLAVAGGGSASVKLWDTA  133 (315)
Q Consensus        54 ~~~~~h~~~v~~~~~~~~g~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~~d~~  133 (315)
                      ..+.+|..+|..+-++|+-.++++++.|.+|++||..+++....+++|.+.+..++|+..|++ +++++.|-.+++||..
T Consensus       102 ~~l~g~r~~vt~v~~hp~~~~v~~as~d~tikv~D~~tg~~e~~LrGHt~sv~di~~~a~Gk~-l~tcSsDl~~~LWd~~  180 (406)
T KOG0295|consen  102 QKLAGHRSSVTRVIFHPSEALVVSASEDATIKVFDTETGELERSLRGHTDSVFDISFDASGKY-LATCSSDLSAKLWDFD  180 (406)
T ss_pred             hhhhccccceeeeeeccCceEEEEecCCceEEEEEccchhhhhhhhccccceeEEEEecCccE-EEecCCccchhheeHH
Confidence            345678899999999999999999999999999999999999999999999999999999975 5788999999999987


Q ss_pred             Cc-ceeeeecCCCCCCCCCCccCCCCcceEEEEECCCCCEEEEecCCCcEEEEEcccceeeeeecCCccceEEEEEcCCC
Q 021247          134 TW-NLIATLSIPRPEGLKPTDKSSSKKFVLSVAWSPDGRRIACGSMDGTISVFDVTRAKFLHHLEGHFMPVRSLVYSPVD  212 (315)
Q Consensus       134 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~s~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~  212 (315)
                      +. +++..             ..+|...|.+++|-|.|.++++++.|.+|+.|++.++-++..+.+|..-|+.+..+. +
T Consensus       181 ~~~~c~ks-------------~~gh~h~vS~V~f~P~gd~ilS~srD~tik~We~~tg~cv~t~~~h~ewvr~v~v~~-D  246 (406)
T KOG0295|consen  181 TFFRCIKS-------------LIGHEHGVSSVFFLPLGDHILSCSRDNTIKAWECDTGYCVKTFPGHSEWVRMVRVNQ-D  246 (406)
T ss_pred             HHHHHHHH-------------hcCcccceeeEEEEecCCeeeecccccceeEEecccceeEEeccCchHhEEEEEecC-C
Confidence            52 22211             124555689999999999999999999999999999999999999999999999886 7


Q ss_pred             CcEEEEEeCCCeEEEEeCCCCeeEEEeecccccEEEEEEcCC---------------CCeEEEEeCCCcEEEEecCccce
Q 021247          213 PRVLFSASDDTHVHMYDAEGKSLVTAMSGHASWVLSVDASPD---------------GAAITTGSSDRTVKLWDLNMRAA  277 (315)
Q Consensus       213 ~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~i~~~~~~~~---------------~~~l~s~~~d~~i~iwd~~~~~~  277 (315)
                      +.++++++.|.++++|-..+++.+..++.|.-+|-+++|-|.               ++++++++.|++|++||+.++.+
T Consensus       247 Gti~As~s~dqtl~vW~~~t~~~k~~lR~hEh~vEci~wap~~~~~~i~~at~~~~~~~~l~s~SrDktIk~wdv~tg~c  326 (406)
T KOG0295|consen  247 GTIIASCSNDQTLRVWVVATKQCKAELREHEHPVECIAWAPESSYPSISEATGSTNGGQVLGSGSRDKTIKIWDVSTGMC  326 (406)
T ss_pred             eeEEEecCCCceEEEEEeccchhhhhhhccccceEEEEecccccCcchhhccCCCCCccEEEeecccceEEEEeccCCeE
Confidence            889999999999999999999888889999999999998763               25999999999999999999999


Q ss_pred             ehcccccccceEEEEEeeCCCEEEEEeCCCcEEEeecC
Q 021247          278 MQSMTNHTDQVWGVSFRPLGGRVVSVSDDKSISLYEYS  315 (315)
Q Consensus       278 ~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~i~i~~~~  315 (315)
                      +-++.+|...|.+++|+|-|+||+++.+|+++++||+.
T Consensus       327 L~tL~ghdnwVr~~af~p~Gkyi~ScaDDktlrvwdl~  364 (406)
T KOG0295|consen  327 LFTLVGHDNWVRGVAFSPGGKYILSCADDKTLRVWDLK  364 (406)
T ss_pred             EEEEecccceeeeeEEcCCCeEEEEEecCCcEEEEEec
Confidence            99999999999999999999999999999999999974

>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]

Probab=100.00  E-value=3.5e-37  Score=230.27  Aligned_cols=295  Identities=24%  Similarity=0.283  Sum_probs=254.7

Q ss_pred             CcccchhhhhhccccceEEEEEeecCCCCCcEEEEeeCCCcEEEEcCCCCcceeeccccccceEEEEeCCCCCEEEEeeC
Q 021247            1 MKFAGLKSVENAHEESVWAVTWVPATETRPALLLTGSLDETVKLWRPDDMQLERTNTGHCLGVVSVAAHPSGIIAASASL   80 (315)
Q Consensus         1 ~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~~~l~sgs~d~~v~~w~~~~~~~~~~~~~h~~~v~~~~~~~~g~~l~s~~~   80 (315)
                      |+.+|...+-.+|+.+|-.++|+|-.+. .-+|++++.|+.-.+-+-+++.-+..+.||.++|.+...+.+....++++.
T Consensus         1 ~~~~~~pl~c~ghtrpvvdl~~s~itp~-g~flisa~kd~~pmlr~g~tgdwigtfeghkgavw~~~l~~na~~aasaaa   79 (334)
T KOG0278|consen    1 MAMRQTPLTCHGHTRPVVDLAFSPITPD-GYFLISASKDGKPMLRNGDTGDWIGTFEGHKGAVWSATLNKNATRAASAAA   79 (334)
T ss_pred             CCcccCceEEcCCCcceeEEeccCCCCC-ceEEEEeccCCCchhccCCCCCcEEeeeccCcceeeeecCchhhhhhhhcc
Confidence            6778888889999999999999997642 347899999999999998999888999999999999999999999999999


Q ss_pred             CCeEEEEECCCCceeEEeeCCcccEEEEEECCCCCeEEEEecCCCeEEEEecCCcceeeeecCCCCCCCCCCccCCCCcc
Q 021247           81 DSFVRVFDVDTNASIATLEASPSEVWQMQFDPKGTTLAVAGGGSASVKLWDTATWNLIATLSIPRPEGLKPTDKSSSKKF  160 (315)
Q Consensus        81 d~~i~~w~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  160 (315)
                      |=+-++||..++..+..++ |..-|..++|+.+.+++ ++|+.+.-+++||+...            ..+|.+...|...
T Consensus        80 dftakvw~a~tgdelhsf~-hkhivk~~af~~ds~~l-ltgg~ekllrvfdln~p------------~App~E~~ghtg~  145 (334)
T KOG0278|consen   80 DFTAKVWDAVTGDELHSFE-HKHIVKAVAFSQDSNYL-LTGGQEKLLRVFDLNRP------------KAPPKEISGHTGG  145 (334)
T ss_pred             cchhhhhhhhhhhhhhhhh-hhheeeeEEecccchhh-hccchHHHhhhhhccCC------------CCCchhhcCCCCc
Confidence            9999999999998887776 56678899999888765 68888999999998642            2334455677788


Q ss_pred             eEEEEECCCCCEEEEecCCCcEEEEEcccceeeeeecCCccceEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCeeEEEee
Q 021247          161 VLSVAWSPDGRRIACGSMDGTISVFDVTRAKFLHHLEGHFMPVRSLVYSPVDPRVLFSASDDTHVHMYDAEGKSLVTAMS  240 (315)
Q Consensus       161 i~~~~~~~~~~~l~~~s~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~  240 (315)
                      |+.+-|....+.+++++.|+.|++||.+++..++.+.- +.+|+++..++ +++ +++-...+.|++||.+...+++.+.
T Consensus       146 Ir~v~wc~eD~~iLSSadd~tVRLWD~rTgt~v~sL~~-~s~VtSlEvs~-dG~-ilTia~gssV~Fwdaksf~~lKs~k  222 (334)
T KOG0278|consen  146 IRTVLWCHEDKCILSSADDKTVRLWDHRTGTEVQSLEF-NSPVTSLEVSQ-DGR-ILTIAYGSSVKFWDAKSFGLLKSYK  222 (334)
T ss_pred             ceeEEEeccCceEEeeccCCceEEEEeccCcEEEEEec-CCCCcceeecc-CCC-EEEEecCceeEEeccccccceeecc
Confidence            99999999899999999999999999999999888763 45789999997 444 5566677789999999887776654


Q ss_pred             cccccEEEEEEcCCCCeEEEEeCCCcEEEEecCccceehcc-cccccceEEEEEeeCCCEEEEEeCCCcEEEeec
Q 021247          241 GHASWVLSVDASPDGAAITTGSSDRTVKLWDLNMRAAMQSM-TNHTDQVWGVSFRPLGGRVVSVSDDKSISLYEY  314 (315)
Q Consensus       241 ~~~~~i~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~-~~~~~~v~~~~~s~~~~~l~s~~~d~~i~i~~~  314 (315)
                      - ...|.+..++|+...++.|+.|..++.||..+++.+..+ .+|-++|.+|.|+|+|..-++||+||+||||+.
T Consensus       223 ~-P~nV~SASL~P~k~~fVaGged~~~~kfDy~TgeEi~~~nkgh~gpVhcVrFSPdGE~yAsGSEDGTirlWQt  296 (334)
T KOG0278|consen  223 M-PCNVESASLHPKKEFFVAGGEDFKVYKFDYNTGEEIGSYNKGHFGPVHCVRFSPDGELYASGSEDGTIRLWQT  296 (334)
T ss_pred             C-ccccccccccCCCceEEecCcceEEEEEeccCCceeeecccCCCCceEEEEECCCCceeeccCCCceEEEEEe
Confidence            2 445888899999999999999999999999999888775 789999999999999999999999999999985

>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=6.7e-36  Score=223.80  Aligned_cols=285  Identities=22%  Similarity=0.316  Sum_probs=232.8

Q ss_pred             ceEEEEEeecCCCCCcEEEEee-----CCCcEEEEcCCCCcceeec--cccccceEEEEeCCCC-CEEEEeeCCCeEEEE
Q 021247           16 SVWAVTWVPATETRPALLLTGS-----LDETVKLWRPDDMQLERTN--TGHCLGVVSVAAHPSG-IIAASASLDSFVRVF   87 (315)
Q Consensus        16 ~v~~v~~~~~~~~~~~~l~sgs-----~d~~v~~w~~~~~~~~~~~--~~h~~~v~~~~~~~~g-~~l~s~~~d~~i~~w   87 (315)
                      .=++|+|+|.-... ..+|++.     ..|.+.|.++...+-+...  ..-.+++..++|++.. +.+++++.||++++|
T Consensus        10 ~GysvqfSPf~~nr-LavAt~q~yGl~G~G~L~ile~~~~~gi~e~~s~d~~D~LfdV~Wse~~e~~~~~a~GDGSLrl~   88 (311)
T KOG0277|consen   10 HGYSVQFSPFVENR-LAVATAQHYGLAGNGRLFILEVTDPKGIQECQSYDTEDGLFDVAWSENHENQVIAASGDGSLRLF   88 (311)
T ss_pred             ccceeEecccccch-hheeehhhcccccCceEEEEecCCCCCeEEEEeeecccceeEeeecCCCcceEEEEecCceEEEe
Confidence            35789999986532 2233332     3678888887533322221  2245688999999865 688889999999999


Q ss_pred             ECCCC-ceeEEeeCCcccEEEEEECCCCCeEEEEecCCCeEEEEecCCcceeeeecCCCCCCCCCCccCCCCcceEEEEE
Q 021247           88 DVDTN-ASIATLEASPSEVWQMQFDPKGTTLAVAGGGSASVKLWDTATWNLIATLSIPRPEGLKPTDKSSSKKFVLSVAW  166 (315)
Q Consensus        88 ~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~  166 (315)
                      |+... .++..++.|..+|.++.|++..+..+++++.|++|++||....+.+.++.             +|...|...+|
T Consensus        89 d~~~~s~Pi~~~kEH~~EV~Svdwn~~~r~~~ltsSWD~TiKLW~~~r~~Sv~Tf~-------------gh~~~Iy~a~~  155 (311)
T KOG0277|consen   89 DLTMPSKPIHKFKEHKREVYSVDWNTVRRRIFLTSSWDGTIKLWDPNRPNSVQTFN-------------GHNSCIYQAAF  155 (311)
T ss_pred             ccCCCCcchhHHHhhhhheEEeccccccceeEEeeccCCceEeecCCCCcceEeec-------------CCccEEEEEec
Confidence            96543 46778889999999999999988888899999999999998777776653             45667999999


Q ss_pred             CC-CCCEEEEecCCCcEEEEEcccceeeeeecCCccceEEEEEcCCCCcEEEEEeCCCeEEEEeCCCC-eeEEEeecccc
Q 021247          167 SP-DGRRIACGSMDGTISVFDVTRAKFLHHLEGHFMPVRSLVYSPVDPRVLFSASDDTHVHMYDAEGK-SLVTAMSGHAS  244 (315)
Q Consensus       167 ~~-~~~~l~~~s~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~-~~~~~~~~~~~  244 (315)
                      +| ..+.|+++|.|+.+++||++..-....+..|..++.++.|+..+.+++++|+.|+.|+.||++.- ..+..+.+|.-
T Consensus       156 sp~~~nlfas~Sgd~~l~lwdvr~~gk~~~i~ah~~Eil~cdw~ky~~~vl~Tg~vd~~vr~wDir~~r~pl~eL~gh~~  235 (311)
T KOG0277|consen  156 SPHIPNLFASASGDGTLRLWDVRSPGKFMSIEAHNSEILCCDWSKYNHNVLATGGVDNLVRGWDIRNLRTPLFELNGHGL  235 (311)
T ss_pred             CCCCCCeEEEccCCceEEEEEecCCCceeEEEeccceeEeecccccCCcEEEecCCCceEEEEehhhccccceeecCCce
Confidence            99 57789999999999999997544344488899999999999999999999999999999999864 56778899999


Q ss_pred             cEEEEEEcCCC-CeEEEEeCCCcEEEEecCcc-ceehcccccccceEEEEEeeC-CCEEEEEeCCCcEEEeec
Q 021247          245 WVLSVDASPDG-AAITTGSSDRTVKLWDLNMR-AAMQSMTNHTDQVWGVSFRPL-GGRVVSVSDDKSISLYEY  314 (315)
Q Consensus       245 ~i~~~~~~~~~-~~l~s~~~d~~i~iwd~~~~-~~~~~~~~~~~~v~~~~~s~~-~~~l~s~~~d~~i~i~~~  314 (315)
                      .|..+.|||.. .+|++++.|=++||||.... ..+++...|++-+..+.||+. +.++|+++.|+.+.||+.
T Consensus       236 AVRkvk~Sph~~~lLaSasYDmT~riw~~~~~ds~~e~~~~HtEFv~g~Dws~~~~~~vAs~gWDe~l~Vw~p  308 (311)
T KOG0277|consen  236 AVRKVKFSPHHASLLASASYDMTVRIWDPERQDSAIETVDHHTEFVCGLDWSLFDPGQVASTGWDELLYVWNP  308 (311)
T ss_pred             EEEEEecCcchhhHhhhccccceEEecccccchhhhhhhhccceEEeccccccccCceeeecccccceeeecc
Confidence            99999999964 58899999999999999854 456777889999999999985 678999999999999983

>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]

Probab=100.00  E-value=1.5e-36  Score=241.42  Aligned_cols=283  Identities=25%  Similarity=0.316  Sum_probs=238.1

Q ss_pred             hhhhccccceEEEEEeecCCCCCcEEEEeeCCCcEEEEcCCCCc--ceeeccccccceEEEEeCCCCCEEEEeeCCCeEE
Q 021247            8 SVENAHEESVWAVTWVPATETRPALLLTGSLDETVKLWRPDDMQ--LERTNTGHCLGVVSVAAHPSGIIAASASLDSFVR   85 (315)
Q Consensus         8 ~~~~~h~~~v~~v~~~~~~~~~~~~l~sgs~d~~v~~w~~~~~~--~~~~~~~h~~~v~~~~~~~~g~~l~s~~~d~~i~   85 (315)
                      -++..|..+|..+.|.+...    .|++|+.|..|++|+....+  +...+.|..++++++.+.+++..+++++.|+.++
T Consensus       169 ~~ld~h~gev~~v~~l~~sd----tlatgg~Dr~Ik~W~v~~~k~~~~~tLaGs~g~it~~d~d~~~~~~iAas~d~~~r  244 (459)
T KOG0288|consen  169 FVLDAHEGEVHDVEFLRNSD----TLATGGSDRIIKLWNVLGEKSELISTLAGSLGNITSIDFDSDNKHVIAASNDKNLR  244 (459)
T ss_pred             hhhhccccccceeEEccCcc----hhhhcchhhhhhhhhcccchhhhhhhhhccCCCcceeeecCCCceEEeecCCCcee
Confidence            45789999999999998654    59999999999999976555  5566778888999999999999999999999999


Q ss_pred             EEECCCCceeEEeeCCcccEEEEEECCCCCeEEEEecCCCeEEEEecCCcceeeeecCCCCCCCCCCccCCCCcceEEEE
Q 021247           86 VFDVDTNASIATLEASPSEVWQMQFDPKGTTLAVAGGGSASVKLWDTATWNLIATLSIPRPEGLKPTDKSSSKKFVLSVA  165 (315)
Q Consensus        86 ~w~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~  165 (315)
                      +|++...+...++.+|.+.|.++.|.-.... +++|+.|.+|++||+....+..++...              ..+..++
T Consensus       245 ~Wnvd~~r~~~TLsGHtdkVt~ak~~~~~~~-vVsgs~DRtiK~WDl~k~~C~kt~l~~--------------S~cnDI~  309 (459)
T KOG0288|consen  245 LWNVDSLRLRHTLSGHTDKVTAAKFKLSHSR-VVSGSADRTIKLWDLQKAYCSKTVLPG--------------SQCNDIV  309 (459)
T ss_pred             eeeccchhhhhhhcccccceeeehhhccccc-eeeccccchhhhhhhhhhheecccccc--------------ccccceE
Confidence            9999999999999999999999999766554 789999999999999876655444211              1133444


Q ss_pred             ECCCCCEEEEecCCCcEEEEEcccceeeeeecCCccceEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCeeEEEeecc---
Q 021247          166 WSPDGRRIACGSMDGTISVFDVTRAKFLHHLEGHFMPVRSLVYSPVDPRVLFSASDDTHVHMYDAEGKSLVTAMSGH---  242 (315)
Q Consensus       166 ~~~~~~~l~~~s~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~---  242 (315)
                      .+  ...+++|..|+.|++||.+.......+..+. .|+++..++ ++..+++++.|..+.+.|+++......+...   
T Consensus       310 ~~--~~~~~SgH~DkkvRfwD~Rs~~~~~sv~~gg-~vtSl~ls~-~g~~lLsssRDdtl~viDlRt~eI~~~~sA~g~k  385 (459)
T KOG0288|consen  310 CS--ISDVISGHFDKKVRFWDIRSADKTRSVPLGG-RVTSLDLSM-DGLELLSSSRDDTLKVIDLRTKEIRQTFSAEGFK  385 (459)
T ss_pred             ec--ceeeeecccccceEEEeccCCceeeEeecCc-ceeeEeecc-CCeEEeeecCCCceeeeecccccEEEEeeccccc
Confidence            44  4578999999999999999999888888765 899999998 6677788899999999999998877766532   


Q ss_pred             -cccEEEEEEcCCCCeEEEEeCCCcEEEEecCccceehccccccc--ceEEEEEeeCCCEEEEEeCCCcEEEee
Q 021247          243 -ASWVLSVDASPDGAAITTGSSDRTVKLWDLNMRAAMQSMTNHTD--QVWGVSFRPLGGRVVSVSDDKSISLYE  313 (315)
Q Consensus       243 -~~~i~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~--~v~~~~~s~~~~~l~s~~~d~~i~i~~  313 (315)
                       ....+.+.|||++.|+++|+.||.|+||++.+++....+.....  .|++++|+|.|..+++++.++.+.+|.
T Consensus       386 ~asDwtrvvfSpd~~YvaAGS~dgsv~iW~v~tgKlE~~l~~s~s~~aI~s~~W~~sG~~Llsadk~~~v~lW~  459 (459)
T KOG0288|consen  386 CASDWTRVVFSPDGSYVAAGSADGSVYIWSVFTGKLEKVLSLSTSNAAITSLSWNPSGSGLLSADKQKAVTLWT  459 (459)
T ss_pred             cccccceeEECCCCceeeeccCCCcEEEEEccCceEEEEeccCCCCcceEEEEEcCCCchhhcccCCcceEecC
Confidence             22367899999999999999999999999999887666544332  699999999999999999999999994

>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]

Probab=100.00  E-value=1.2e-36  Score=235.60  Aligned_cols=286  Identities=18%  Similarity=0.312  Sum_probs=248.8

Q ss_pred             hhccccceEEEEEeecCCCCCcEEEEeeCCCcEEEEcCCCCcceeecc--------ccccceEEEEeCCCCCEEEEeeCC
Q 021247           10 ENAHEESVWAVTWVPATETRPALLLTGSLDETVKLWRPDDMQLERTNT--------GHCLGVVSVAAHPSGIIAASASLD   81 (315)
Q Consensus        10 ~~~h~~~v~~v~~~~~~~~~~~~l~sgs~d~~v~~w~~~~~~~~~~~~--------~h~~~v~~~~~~~~g~~l~s~~~d   81 (315)
                      ..+...-+-|..|+|+++    +|++||.||-|.+|++-++++.+.++        -+..+|.|++|+.|..++++|+.|
T Consensus       209 KFg~KSh~EcA~FSPDgq----yLvsgSvDGFiEVWny~~GKlrKDLkYQAqd~fMMmd~aVlci~FSRDsEMlAsGsqD  284 (508)
T KOG0275|consen  209 KFGQKSHVECARFSPDGQ----YLVSGSVDGFIEVWNYTTGKLRKDLKYQAQDNFMMMDDAVLCISFSRDSEMLASGSQD  284 (508)
T ss_pred             ecccccchhheeeCCCCc----eEeeccccceeeeehhccchhhhhhhhhhhcceeecccceEEEeecccHHHhhccCcC
Confidence            345556788999999987    79999999999999998887765432        356799999999999999999999


Q ss_pred             CeEEEEECCCCceeEEee-CCcccEEEEEECCCCCeEEEEecCCCeEEEEecCCcceeeeecCCCCCCCCCCccCCCCcc
Q 021247           82 SFVRVFDVDTNASIATLE-ASPSEVWQMQFDPKGTTLAVAGGGSASVKLWDTATWNLIATLSIPRPEGLKPTDKSSSKKF  160 (315)
Q Consensus        82 ~~i~~w~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  160 (315)
                      |.|++|.+.++.|++.++ .|...|.++.|+.++..+ ++++.|.++++..+.+++.+..+.             +|..+
T Consensus       285 GkIKvWri~tG~ClRrFdrAHtkGvt~l~FSrD~Sqi-LS~sfD~tvRiHGlKSGK~LKEfr-------------GHsSy  350 (508)
T KOG0275|consen  285 GKIKVWRIETGQCLRRFDRAHTKGVTCLSFSRDNSQI-LSASFDQTVRIHGLKSGKCLKEFR-------------GHSSY  350 (508)
T ss_pred             CcEEEEEEecchHHHHhhhhhccCeeEEEEccCcchh-hcccccceEEEeccccchhHHHhc-------------Ccccc
Confidence            999999999999999886 788899999999998876 578899999999999988876553             56778


Q ss_pred             eEEEEECCCCCEEEEecCCCcEEEEEcccceeeeeec--CCccceEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCeeEEE
Q 021247          161 VLSVAWSPDGRRIACGSMDGTISVFDVTRAKFLHHLE--GHFMPVRSLVYSPVDPRVLFSASDDTHVHMYDAEGKSLVTA  238 (315)
Q Consensus       161 i~~~~~~~~~~~l~~~s~dg~i~i~d~~~~~~~~~~~--~~~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~  238 (315)
                      |+...|.++|..+++++.||+|++|+..+.+++.+++  +...+|+.+...|.++..++.+...+++.+-++++.-....
T Consensus       351 vn~a~ft~dG~~iisaSsDgtvkvW~~KtteC~~Tfk~~~~d~~vnsv~~~PKnpeh~iVCNrsntv~imn~qGQvVrsf  430 (508)
T KOG0275|consen  351 VNEATFTDDGHHIISASSDGTVKVWHGKTTECLSTFKPLGTDYPVNSVILLPKNPEHFIVCNRSNTVYIMNMQGQVVRSF  430 (508)
T ss_pred             ccceEEcCCCCeEEEecCCccEEEecCcchhhhhhccCCCCcccceeEEEcCCCCceEEEEcCCCeEEEEeccceEEeee
Confidence            9999999999999999999999999999888877765  34568899999998999999999999999999886533332


Q ss_pred             eec--ccccEEEEEEcCCCCeEEEEeCCCcEEEEecCccceehcccccccceEEEEEeeCCCEEEEEeCCCcEEEee
Q 021247          239 MSG--HASWVLSVDASPDGAAITTGSSDRTVKLWDLNMRAAMQSMTNHTDQVWGVSFRPLGGRVVSVSDDKSISLYE  313 (315)
Q Consensus       239 ~~~--~~~~i~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~i~i~~  313 (315)
                      ..+  ..+...+...+|.|.++...+.|+.++.|...+++.-+++.-|+..+..++.+|..+.|++.+.||.+++|.
T Consensus       431 sSGkREgGdFi~~~lSpkGewiYcigED~vlYCF~~~sG~LE~tl~VhEkdvIGl~HHPHqNllAsYsEDgllKLWk  507 (508)
T KOG0275|consen  431 SSGKREGGDFINAILSPKGEWIYCIGEDGVLYCFSVLSGKLERTLPVHEKDVIGLTHHPHQNLLASYSEDGLLKLWK  507 (508)
T ss_pred             ccCCccCCceEEEEecCCCcEEEEEccCcEEEEEEeecCceeeeeecccccccccccCcccchhhhhcccchhhhcC
Confidence            222  245566778999999999999999999999999999999999999999999999999999999999999996

>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]

Probab=100.00  E-value=1.2e-36  Score=238.31  Aligned_cols=279  Identities=21%  Similarity=0.326  Sum_probs=227.0

Q ss_pred             hhccccceEEEEEeecCCCCCcEEEEeeCCCcEEEEcCCCCcceeeccccccceEEEEeCCCCCEEEEeeCCCeEEEEEC
Q 021247           10 ENAHEESVWAVTWVPATETRPALLLTGSLDETVKLWRPDDMQLERTNTGHCLGVVSVAAHPSGIIAASASLDSFVRVFDV   89 (315)
Q Consensus        10 ~~~h~~~v~~v~~~~~~~~~~~~l~sgs~d~~v~~w~~~~~~~~~~~~~h~~~v~~~~~~~~g~~l~s~~~d~~i~~w~~   89 (315)
                      +.+|.+.|.|++=.|..   ...++|||.||.|++||+.+..+.+.+..|.+.|..|+++.  ..+++++.|.+|+.|.+
T Consensus        62 L~gHrdGV~~lakhp~~---ls~~aSGs~DG~VkiWnlsqR~~~~~f~AH~G~V~Gi~v~~--~~~~tvgdDKtvK~wk~  136 (433)
T KOG0268|consen   62 LDGHRDGVSCLAKHPNK---LSTVASGSCDGEVKIWNLSQRECIRTFKAHEGLVRGICVTQ--TSFFTVGDDKTVKQWKI  136 (433)
T ss_pred             ccccccccchhhcCcch---hhhhhccccCceEEEEehhhhhhhheeecccCceeeEEecc--cceEEecCCcceeeeec
Confidence            57999999999977743   35799999999999999999999999999999999999987  67788999999999998


Q ss_pred             CCCceeEEeeCCcccEEEEEECCCCCeEEEEecCCCeEEEEecCCcceeeeecCCCCCCCCCCccCCCCcceEEEEECCC
Q 021247           90 DTNASIATLEASPSEVWQMQFDPKGTTLAVAGGGSASVKLWDTATWNLIATLSIPRPEGLKPTDKSSSKKFVLSVAWSPD  169 (315)
Q Consensus        90 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~  169 (315)
                      +.. ...++. ....+..+.-+..++ .++++|  ..|.|||....+++..+...             .+.|.++.|+|.
T Consensus       137 ~~~-p~~til-g~s~~~gIdh~~~~~-~FaTcG--e~i~IWD~~R~~Pv~smswG-------------~Dti~svkfNpv  198 (433)
T KOG0268|consen  137 DGP-PLHTIL-GKSVYLGIDHHRKNS-VFATCG--EQIDIWDEQRDNPVSSMSWG-------------ADSISSVKFNPV  198 (433)
T ss_pred             cCC-cceeee-ccccccccccccccc-cccccC--ceeeecccccCCccceeecC-------------CCceeEEecCCC
Confidence            763 444443 344566666555444 445554  47999999876666655432             234889999995


Q ss_pred             -CCEEEEecCCCcEEEEEcccceeeeeecCCccceEEEEEcCCCCcEEEEEeCCCeEEEEeCCCC-eeEEEeecccccEE
Q 021247          170 -GRRIACGSMDGTISVFDVTRAKFLHHLEGHFMPVRSLVYSPVDPRVLFSASDDTHVHMYDAEGK-SLVTAMSGHASWVL  247 (315)
Q Consensus       170 -~~~l~~~s~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~-~~~~~~~~~~~~i~  247 (315)
                       -..|++|..|+.|.+||++++.++.++.. ....+.|+|+| +...+++|..|..++.||++.. ..+....+|.+.+.
T Consensus       199 ETsILas~~sDrsIvLyD~R~~~Pl~KVi~-~mRTN~IswnP-eafnF~~a~ED~nlY~~DmR~l~~p~~v~~dhvsAV~  276 (433)
T KOG0268|consen  199 ETSILASCASDRSIVLYDLRQASPLKKVIL-TMRTNTICWNP-EAFNFVAANEDHNLYTYDMRNLSRPLNVHKDHVSAVM  276 (433)
T ss_pred             cchheeeeccCCceEEEecccCCccceeee-eccccceecCc-cccceeeccccccceehhhhhhcccchhhcccceeEE
Confidence             45677888999999999999998877653 23557899999 8888999999999999999864 45566789999999


Q ss_pred             EEEEcCCCCeEEEEeCCCcEEEEecCccceehccc-ccccceEEEEEeeCCCEEEEEeCCCcEEEee
Q 021247          248 SVDASPDGAAITTGSSDRTVKLWDLNMRAAMQSMT-NHTDQVWGVSFRPLGGRVVSVSDDKSISLYE  313 (315)
Q Consensus       248 ~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~-~~~~~v~~~~~s~~~~~l~s~~~d~~i~i~~  313 (315)
                      +++|||.|+-+++|+.|.+|+||..+.+..-..+- .-.+.|.+|.||.|.+++++||+|+.|+||.
T Consensus       277 dVdfsptG~EfvsgsyDksIRIf~~~~~~SRdiYhtkRMq~V~~Vk~S~Dskyi~SGSdd~nvRlWk  343 (433)
T KOG0268|consen  277 DVDFSPTGQEFVSGSYDKSIRIFPVNHGHSRDIYHTKRMQHVFCVKYSMDSKYIISGSDDGNVRLWK  343 (433)
T ss_pred             EeccCCCcchhccccccceEEEeecCCCcchhhhhHhhhheeeEEEEeccccEEEecCCCcceeeee
Confidence            99999999999999999999999998765443321 1235799999999999999999999999996

>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]

Probab=100.00  E-value=8.7e-37  Score=238.23  Aligned_cols=229  Identities=23%  Similarity=0.405  Sum_probs=202.0

Q ss_pred             cccceEEEEeCCCCCEEEEeeCCCeEEEEECCCCceeEEeeCCcccEEEEEECCCCCeEEEEecCCCeEEEEecCCccee
Q 021247           59 HCLGVVSVAAHPSGIIAASASLDSFVRVFDVDTNASIATLEASPSEVWQMQFDPKGTTLAVAGGGSASVKLWDTATWNLI  138 (315)
Q Consensus        59 h~~~v~~~~~~~~g~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~  138 (315)
                      ...+|.|+++  |...+++|..|.+|++||.++..+...+.+|.+.|.++.|+..   ++++|+.|.+|++||..+++++
T Consensus       196 ~skgVYClQY--DD~kiVSGlrDnTikiWD~n~~~c~~~L~GHtGSVLCLqyd~r---viisGSSDsTvrvWDv~tge~l  270 (499)
T KOG0281|consen  196 NSKGVYCLQY--DDEKIVSGLRDNTIKIWDKNSLECLKILTGHTGSVLCLQYDER---VIVSGSSDSTVRVWDVNTGEPL  270 (499)
T ss_pred             cCCceEEEEe--cchhhhcccccCceEEeccccHHHHHhhhcCCCcEEeeeccce---EEEecCCCceEEEEeccCCchh
Confidence            3457888886  4558899999999999999999999999999999999999743   8899999999999999998877


Q ss_pred             eeecCCCCCCCCCCccCCCCcceEEEEECCCCCEEEEecCCCcEEEEEccccee---eeeecCCccceEEEEEcCCCCcE
Q 021247          139 ATLSIPRPEGLKPTDKSSSKKFVLSVAWSPDGRRIACGSMDGTISVFDVTRAKF---LHHLEGHFMPVRSLVYSPVDPRV  215 (315)
Q Consensus       139 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~s~dg~i~i~d~~~~~~---~~~~~~~~~~v~~~~~~~~~~~~  215 (315)
                      .++.             .|...|..+.|+.  .++++++.|.++.+||+.....   ...+.+|...|+.+.|+   .++
T Consensus       271 ~tli-------------hHceaVLhlrf~n--g~mvtcSkDrsiaVWdm~sps~it~rrVLvGHrAaVNvVdfd---~ky  332 (499)
T KOG0281|consen  271 NTLI-------------HHCEAVLHLRFSN--GYMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFD---DKY  332 (499)
T ss_pred             hHHh-------------hhcceeEEEEEeC--CEEEEecCCceeEEEeccCchHHHHHHHHhhhhhheeeeccc---cce
Confidence            6653             3455588888874  6999999999999999975542   34567999999999986   459


Q ss_pred             EEEEeCCCeEEEEeCCCCeeEEEeecccccEEEEEEcCCCCeEEEEeCCCcEEEEecCccceehcccccccceEEEEEee
Q 021247          216 LFSASDDTHVHMYDAEGKSLVTAMSGHASWVLSVDASPDGAAITTGSSDRTVKLWDLNMRAAMQSMTNHTDQVWGVSFRP  295 (315)
Q Consensus       216 l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~  295 (315)
                      +++++.|.+|++|++.+.+.+..+.+|.-.|.++.+  .++++++|+.|.+|++||+..|..+..+++|++-|.++.|. 
T Consensus       333 IVsASgDRTikvW~~st~efvRtl~gHkRGIAClQY--r~rlvVSGSSDntIRlwdi~~G~cLRvLeGHEeLvRciRFd-  409 (499)
T KOG0281|consen  333 IVSASGDRTIKVWSTSTCEFVRTLNGHKRGIACLQY--RDRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRFD-  409 (499)
T ss_pred             EEEecCCceEEEEeccceeeehhhhcccccceehhc--cCeEEEecCCCceEEEEeccccHHHHHHhchHHhhhheeec-
Confidence            999999999999999999999999999999988765  57899999999999999999999999999999999999995 


Q ss_pred             CCCEEEEEeCCCcEEEeec
Q 021247          296 LGGRVVSVSDDKSISLYEY  314 (315)
Q Consensus       296 ~~~~l~s~~~d~~i~i~~~  314 (315)
                       .+.+++|+.||+|+|||+
T Consensus       410 -~krIVSGaYDGkikvWdl  427 (499)
T KOG0281|consen  410 -NKRIVSGAYDGKIKVWDL  427 (499)
T ss_pred             -CceeeeccccceEEEEec
Confidence             569999999999999997

>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]

Probab=100.00  E-value=1.1e-33  Score=231.41  Aligned_cols=288  Identities=19%  Similarity=0.312  Sum_probs=242.3

Q ss_pred             hhhhccccceEEEEEeecCCCCCcEEEEeeCCCcEEEEcCCCCc--ceeeccccccceEEEEeCCCCCEEEEeeC--CCe
Q 021247            8 SVENAHEESVWAVTWVPATETRPALLLTGSLDETVKLWRPDDMQ--LERTNTGHCLGVVSVAAHPSGIIAASASL--DSF   83 (315)
Q Consensus         8 ~~~~~h~~~v~~v~~~~~~~~~~~~l~sgs~d~~v~~w~~~~~~--~~~~~~~h~~~v~~~~~~~~g~~l~s~~~--d~~   83 (315)
                      .+...|.-.++-..++|.+.    ++++|...|+|+||+..+.+  +..+++.-.++|..|+|+++++.+++.+.  ++.
T Consensus        53 ~iYtEH~~~vtVAkySPsG~----yiASGD~sG~vRIWdtt~~~hiLKnef~v~aG~I~Di~Wd~ds~RI~avGEGrerf  128 (603)
T KOG0318|consen   53 DIYTEHAHQVTVAKYSPSGF----YIASGDVSGKVRIWDTTQKEHILKNEFQVLAGPIKDISWDFDSKRIAAVGEGRERF  128 (603)
T ss_pred             eeeccccceeEEEEeCCCce----EEeecCCcCcEEEEeccCcceeeeeeeeecccccccceeCCCCcEEEEEecCccce
Confidence            34578989999999999875    79999999999999975422  23345556789999999999998887653  445


Q ss_pred             EEEEECCCCceeEEeeCCcccEEEEEECCCCCeEEEEecCCCeEEEEecCCcceeeeecCCCCCCCCCCccCCCCcceEE
Q 021247           84 VRVFDVDTNASIATLEASPSEVWQMQFDPKGTTLAVAGGGSASVKLWDTATWNLIATLSIPRPEGLKPTDKSSSKKFVLS  163 (315)
Q Consensus        84 i~~w~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~  163 (315)
                      .+++-.+++..+-.+.+|...|++++|-|...+-+++|++|++|.+|+-...+...+.             ..|..+|.+
T Consensus       129 g~~F~~DSG~SvGei~GhSr~ins~~~KpsRPfRi~T~sdDn~v~ffeGPPFKFk~s~-------------r~HskFV~~  195 (603)
T KOG0318|consen  129 GHVFLWDSGNSVGEITGHSRRINSVDFKPSRPFRIATGSDDNTVAFFEGPPFKFKSSF-------------REHSKFVNC  195 (603)
T ss_pred             eEEEEecCCCccceeeccceeEeeeeccCCCceEEEeccCCCeEEEeeCCCeeeeecc-------------cccccceee
Confidence            5555556778888899999999999999999998999999999999986543333222             246668999


Q ss_pred             EEECCCCCEEEEecCCCcEEEEEcccceeeeeec---CCccceEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCeeEEEee
Q 021247          164 VAWSPDGRRIACGSMDGTISVFDVTRAKFLHHLE---GHFMPVRSLVYSPVDPRVLFSASDDTHVHMYDAEGKSLVTAMS  240 (315)
Q Consensus       164 ~~~~~~~~~l~~~s~dg~i~i~d~~~~~~~~~~~---~~~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~  240 (315)
                      +.|+|||..|++.+.||.+.+||=.+++.+..+.   +|.+.|.++.|+| ++..+++++.|.++++||....++++++.
T Consensus       196 VRysPDG~~Fat~gsDgki~iyDGktge~vg~l~~~~aHkGsIfalsWsP-Ds~~~~T~SaDkt~KIWdVs~~slv~t~~  274 (603)
T KOG0318|consen  196 VRYSPDGSRFATAGSDGKIYIYDGKTGEKVGELEDSDAHKGSIFALSWSP-DSTQFLTVSADKTIKIWDVSTNSLVSTWP  274 (603)
T ss_pred             EEECCCCCeEEEecCCccEEEEcCCCccEEEEecCCCCccccEEEEEECC-CCceEEEecCCceEEEEEeeccceEEEee
Confidence            9999999999999999999999999999888887   8999999999999 77899999999999999999998887765


Q ss_pred             ccc---ccEEEEEEcCCCCeEEEEeCCCcEEEEecCccceehcccccccceEEEEEeeCCCEEEEEeCCCcEEEeecC
Q 021247          241 GHA---SWVLSVDASPDGAAITTGSSDRTVKLWDLNMRAAMQSMTNHTDQVWGVSFRPLGGRVVSVSDDKSISLYEYS  315 (315)
Q Consensus       241 ~~~---~~i~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~i~i~~~~  315 (315)
                      -..   ..-..+.|.  ...|++-+.+|+|.+++......++++.+|...|++++.+|++.+|++++.||.|.=|+.+
T Consensus       275 ~~~~v~dqqvG~lWq--kd~lItVSl~G~in~ln~~d~~~~~~i~GHnK~ITaLtv~~d~~~i~SgsyDG~I~~W~~~  350 (603)
T KOG0318|consen  275 MGSTVEDQQVGCLWQ--KDHLITVSLSGTINYLNPSDPSVLKVISGHNKSITALTVSPDGKTIYSGSYDGHINSWDSG  350 (603)
T ss_pred             cCCchhceEEEEEEe--CCeEEEEEcCcEEEEecccCCChhheecccccceeEEEEcCCCCEEEeeccCceEEEEecC
Confidence            321   222344565  4578999999999999999989999999999999999999999999999999999999864

>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=1.4e-35  Score=222.08  Aligned_cols=244  Identities=23%  Similarity=0.399  Sum_probs=207.0

Q ss_pred             cccceEEEEEeecCCCCCcEEEEeeCCCcEEEEcCCC-CcceeeccccccceEEEEeCCC-CCEEEEeeCCCeEEEEECC
Q 021247           13 HEESVWAVTWVPATETRPALLLTGSLDETVKLWRPDD-MQLERTNTGHCLGVVSVAAHPS-GIIAASASLDSFVRVFDVD   90 (315)
Q Consensus        13 h~~~v~~v~~~~~~~~~~~~l~sgs~d~~v~~w~~~~-~~~~~~~~~h~~~v~~~~~~~~-g~~l~s~~~d~~i~~w~~~   90 (315)
                      -++.++.|+|++...   ..+++++.||++++||... .+.+..++.|...|.++.+++. +..++++++|++|++|+.+
T Consensus        59 ~~D~LfdV~Wse~~e---~~~~~a~GDGSLrl~d~~~~s~Pi~~~kEH~~EV~Svdwn~~~r~~~ltsSWD~TiKLW~~~  135 (311)
T KOG0277|consen   59 TEDGLFDVAWSENHE---NQVIAASGDGSLRLFDLTMPSKPIHKFKEHKREVYSVDWNTVRRRIFLTSSWDGTIKLWDPN  135 (311)
T ss_pred             cccceeEeeecCCCc---ceEEEEecCceEEEeccCCCCcchhHHHhhhhheEEeccccccceeEEeeccCCceEeecCC
Confidence            357899999998654   4799999999999999532 2345667899999999999974 5677888999999999999


Q ss_pred             CCceeEEeeCCcccEEEEEECCCCCeEEEEecCCCeEEEEecCCcceeeeecCCCCCCCCCCccCCCCcceEEEEECC-C
Q 021247           91 TNASIATLEASPSEVWQMQFDPKGTTLAVAGGGSASVKLWDTATWNLIATLSIPRPEGLKPTDKSSSKKFVLSVAWSP-D  169 (315)
Q Consensus        91 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~  169 (315)
                      ....++++.+|...|...+|+|....+++++++|+++++||++..-..-.+.             .|...|.++.|+. +
T Consensus       136 r~~Sv~Tf~gh~~~Iy~a~~sp~~~nlfas~Sgd~~l~lwdvr~~gk~~~i~-------------ah~~Eil~cdw~ky~  202 (311)
T KOG0277|consen  136 RPNSVQTFNGHNSCIYQAAFSPHIPNLFASASGDGTLRLWDVRSPGKFMSIE-------------AHNSEILCCDWSKYN  202 (311)
T ss_pred             CCcceEeecCCccEEEEEecCCCCCCeEEEccCCceEEEEEecCCCceeEEE-------------eccceeEeecccccC
Confidence            9999999999999999999999998899999999999999987532111122             2344599999998 5


Q ss_pred             CCEEEEecCCCcEEEEEcccce-eeeeecCCccceEEEEEcCCCCcEEEEEeCCCeEEEEeCC-CCeeEEEeecccccEE
Q 021247          170 GRRIACGSMDGTISVFDVTRAK-FLHHLEGHFMPVRSLVYSPVDPRVLFSASDDTHVHMYDAE-GKSLVTAMSGHASWVL  247 (315)
Q Consensus       170 ~~~l~~~s~dg~i~i~d~~~~~-~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~-~~~~~~~~~~~~~~i~  247 (315)
                      .+.|++|+.|+.|+.||++..+ ++..+.+|...|+.++|+|....+|++++-|=++++||.. ....+.....|...+.
T Consensus       203 ~~vl~Tg~vd~~vr~wDir~~r~pl~eL~gh~~AVRkvk~Sph~~~lLaSasYDmT~riw~~~~~ds~~e~~~~HtEFv~  282 (311)
T KOG0277|consen  203 HNVLATGGVDNLVRGWDIRNLRTPLFELNGHGLAVRKVKFSPHHASLLASASYDMTVRIWDPERQDSAIETVDHHTEFVC  282 (311)
T ss_pred             CcEEEecCCCceEEEEehhhccccceeecCCceEEEEEecCcchhhHhhhccccceEEecccccchhhhhhhhccceEEe
Confidence            6678999999999999998654 5778899999999999999888999999999999999987 4456666778899999


Q ss_pred             EEEEcC-CCCeEEEEeCCCcEEEEec
Q 021247          248 SVDASP-DGAAITTGSSDRTVKLWDL  272 (315)
Q Consensus       248 ~~~~~~-~~~~l~s~~~d~~i~iwd~  272 (315)
                      .++|++ ++.++|+.+.|+.++||+-
T Consensus       283 g~Dws~~~~~~vAs~gWDe~l~Vw~p  308 (311)
T KOG0277|consen  283 GLDWSLFDPGQVASTGWDELLYVWNP  308 (311)
T ss_pred             ccccccccCceeeecccccceeeecc
Confidence            999998 5678999999999999973

>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=5.1e-35  Score=243.79  Aligned_cols=246  Identities=24%  Similarity=0.353  Sum_probs=225.9

Q ss_pred             eeccccccceEEEEeCCCCCEEEEeeCCCeEEEEECCCCceeEEeeCCcccEEEEEECCCCCeEEEEecCCCeEEEEecC
Q 021247           54 RTNTGHCLGVVSVAAHPSGIIAASASLDSFVRVFDVDTNASIATLEASPSEVWQMQFDPKGTTLAVAGGGSASVKLWDTA  133 (315)
Q Consensus        54 ~~~~~h~~~v~~~~~~~~g~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~~d~~  133 (315)
                      +.+..+...|.++.+||....++++=..|.+.+||.++...++.++....||....|-+..+ -+++|++|.+|++|+..
T Consensus         7 rk~~~rSdRVKsVd~HPtePw~la~LynG~V~IWnyetqtmVksfeV~~~PvRa~kfiaRkn-Wiv~GsDD~~IrVfnyn   85 (794)
T KOG0276|consen    7 RKFQSRSDRVKSVDFHPTEPWILAALYNGDVQIWNYETQTMVKSFEVSEVPVRAAKFIARKN-WIVTGSDDMQIRVFNYN   85 (794)
T ss_pred             hHhhccCCceeeeecCCCCceEEEeeecCeeEEEecccceeeeeeeecccchhhheeeeccc-eEEEecCCceEEEEecc
Confidence            34455788999999999999999999999999999999999999998889999999988766 45789999999999999


Q ss_pred             CcceeeeecCCCCCCCCCCccCCCCcceEEEEECCCCCEEEEecCCCcEEEEEcccc-eeeeeecCCccceEEEEEcCCC
Q 021247          134 TWNLIATLSIPRPEGLKPTDKSSSKKFVLSVAWSPDGRRIACGSMDGTISVFDVTRA-KFLHHLEGHFMPVRSLVYSPVD  212 (315)
Q Consensus       134 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~s~dg~i~i~d~~~~-~~~~~~~~~~~~v~~~~~~~~~  212 (315)
                      +++.+..+.             .|.++|++++.+|...+++++|.|-.|++||-+.+ .+.+.+.+|.--|++++|.|.+
T Consensus        86 t~ekV~~Fe-------------AH~DyIR~iavHPt~P~vLtsSDDm~iKlW~we~~wa~~qtfeGH~HyVMqv~fnPkD  152 (794)
T KOG0276|consen   86 TGEKVKTFE-------------AHSDYIRSIAVHPTLPYVLTSSDDMTIKLWDWENEWACEQTFEGHEHYVMQVAFNPKD  152 (794)
T ss_pred             cceeeEEee-------------ccccceeeeeecCCCCeEEecCCccEEEEeeccCceeeeeEEcCcceEEEEEEecCCC
Confidence            988877663             57788999999999999999999999999998755 4567889999999999999999


Q ss_pred             CcEEEEEeCCCeEEEEeCCCCeeEEEeecccccEEEEEEcCCC--CeEEEEeCCCcEEEEecCccceehcccccccceEE
Q 021247          213 PRVLFSASDDTHVHMYDAEGKSLVTAMSGHASWVLSVDASPDG--AAITTGSSDRTVKLWDLNMRAAMQSMTNHTDQVWG  290 (315)
Q Consensus       213 ~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~i~~~~~~~~~--~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~  290 (315)
                      ...+++++.|++|++|.+.......++.+|...|+++++-+.|  .+|+||+.|.+|+|||..++.+++++.+|...|..
T Consensus       153 ~ntFaS~sLDrTVKVWslgs~~~nfTl~gHekGVN~Vdyy~~gdkpylIsgaDD~tiKvWDyQtk~CV~TLeGHt~Nvs~  232 (794)
T KOG0276|consen  153 PNTFASASLDRTVKVWSLGSPHPNFTLEGHEKGVNCVDYYTGGDKPYLISGADDLTIKVWDYQTKSCVQTLEGHTNNVSF  232 (794)
T ss_pred             ccceeeeeccccEEEEEcCCCCCceeeeccccCcceEEeccCCCcceEEecCCCceEEEeecchHHHHHHhhcccccceE
Confidence            9999999999999999999888888999999999999997754  69999999999999999999999999999999999


Q ss_pred             EEEeeCCCEEEEEeCCCcEEEee
Q 021247          291 VSFRPLGGRVVSVSDDKSISLYE  313 (315)
Q Consensus       291 ~~~s~~~~~l~s~~~d~~i~i~~  313 (315)
                      +.|+|.-..+++||.||++|||.
T Consensus       233 v~fhp~lpiiisgsEDGTvriWh  255 (794)
T KOG0276|consen  233 VFFHPELPIIISGSEDGTVRIWN  255 (794)
T ss_pred             EEecCCCcEEEEecCCccEEEec
Confidence            99999999999999999999996

>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]

Probab=100.00  E-value=2.5e-34  Score=249.69  Aligned_cols=242  Identities=31%  Similarity=0.530  Sum_probs=213.1

Q ss_pred             cccceEEEEeCCCCCEEEEeeCCCeEEEEECCCCc--eeEEeeCCcccEEEEEECCCCCeEEEEecCCCeEEEEec-CCc
Q 021247           59 HCLGVVSVAAHPSGIIAASASLDSFVRVFDVDTNA--SIATLEASPSEVWQMQFDPKGTTLAVAGGGSASVKLWDT-ATW  135 (315)
Q Consensus        59 h~~~v~~~~~~~~g~~l~s~~~d~~i~~w~~~~~~--~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~~d~-~~~  135 (315)
                      +...|.++.|+++|..+++++.|+.+++|+.....  ....+..|...|..++|+|++.+ +++++.|.+|++||+ ..+
T Consensus       158 ~~~sv~~~~fs~~g~~l~~~~~~~~i~~~~~~~~~~~~~~~l~~h~~~v~~~~fs~d~~~-l~s~s~D~tiriwd~~~~~  236 (456)
T KOG0266|consen  158 ECPSVTCVDFSPDGRALAAASSDGLIRIWKLEGIKSNLLRELSGHTRGVSDVAFSPDGSY-LLSGSDDKTLRIWDLKDDG  236 (456)
T ss_pred             ccCceEEEEEcCCCCeEEEccCCCcEEEeecccccchhhccccccccceeeeEECCCCcE-EEEecCCceEEEeeccCCC
Confidence            46789999999999999999999999999997776  56666788899999999999984 578999999999999 444


Q ss_pred             ceeeeecCCCCCCCCCCccCCCCcceEEEEECCCCCEEEEecCCCcEEEEEcccceeeeeecCCccceEEEEEcCCCCcE
Q 021247          136 NLIATLSIPRPEGLKPTDKSSSKKFVLSVAWSPDGRRIACGSMDGTISVFDVTRAKFLHHLEGHFMPVRSLVYSPVDPRV  215 (315)
Q Consensus       136 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~s~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~  215 (315)
                      +.+.++.             +|..+|++++|+|+++.+++|+.|++|++||++++++...+.+|...|.+++|++ ++++
T Consensus       237 ~~~~~l~-------------gH~~~v~~~~f~p~g~~i~Sgs~D~tvriWd~~~~~~~~~l~~hs~~is~~~f~~-d~~~  302 (456)
T KOG0266|consen  237 RNLKTLK-------------GHSTYVTSVAFSPDGNLLVSGSDDGTVRIWDVRTGECVRKLKGHSDGISGLAFSP-DGNL  302 (456)
T ss_pred             eEEEEec-------------CCCCceEEEEecCCCCEEEEecCCCcEEEEeccCCeEEEeeeccCCceEEEEECC-CCCE
Confidence            5555553             4666799999999999999999999999999999999999999999999999998 7789


Q ss_pred             EEEEeCCCeEEEEeCCCCe--eEEEeeccccc--EEEEEEcCCCCeEEEEeCCCcEEEEecCccceehcccccccc---e
Q 021247          216 LFSASDDTHVHMYDAEGKS--LVTAMSGHASW--VLSVDASPDGAAITTGSSDRTVKLWDLNMRAAMQSMTNHTDQ---V  288 (315)
Q Consensus       216 l~s~~~d~~i~~wd~~~~~--~~~~~~~~~~~--i~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~---v  288 (315)
                      |++++.|+.|++||..++.  ++..+.++...  ++.+.|+|++.++++++.|+.+++||+..+....++.+|...   +
T Consensus       303 l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~fsp~~~~ll~~~~d~~~~~w~l~~~~~~~~~~~~~~~~~~~  382 (456)
T KOG0266|consen  303 LVSASYDGTIRVWDLETGSKLCLKLLSGAENSAPVTSVQFSPNGKYLLSASLDRTLKLWDLRSGKSVGTYTGHSNLVRCI  382 (456)
T ss_pred             EEEcCCCccEEEEECCCCceeeeecccCCCCCCceeEEEECCCCcEEEEecCCCeEEEEEccCCcceeeecccCCcceeE
Confidence            9999999999999999988  45666666544  899999999999999999999999999999888888888764   4


Q ss_pred             EEEEEeeCCCEEEEEeCCCcEEEeecC
Q 021247          289 WGVSFRPLGGRVVSVSDDKSISLYEYS  315 (315)
Q Consensus       289 ~~~~~s~~~~~l~s~~~d~~i~i~~~~  315 (315)
                      .+..+++.+.++++++.|+.|++|++.
T Consensus       383 ~~~~~~~~~~~i~sg~~d~~v~~~~~~  409 (456)
T KOG0266|consen  383 FSPTLSTGGKLIYSGSEDGSVYVWDSS  409 (456)
T ss_pred             ecccccCCCCeEEEEeCCceEEEEeCC
Confidence            455667889999999999999999964

>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=1.2e-34  Score=214.83  Aligned_cols=243  Identities=21%  Similarity=0.272  Sum_probs=214.6

Q ss_pred             eeeccccccceEEEEeCCCCCEEEEeeCCCeEEEEECCCCceeEEeeCCcccEEEEEECCCCCeEEEEecCCCeEEEEec
Q 021247           53 ERTNTGHCLGVVSVAAHPSGIIAASASLDSFVRVFDVDTNASIATLEASPSEVWQMQFDPKGTTLAVAGGGSASVKLWDT  132 (315)
Q Consensus        53 ~~~~~~h~~~v~~~~~~~~g~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~~d~  132 (315)
                      .+.+.++.++|..+.++-+|++.++++.|++||+||...+.++.++.+|..+|..++.+.++..+ ++|++|..+.+||.
T Consensus        10 ~~~l~~~qgaV~avryN~dGnY~ltcGsdrtvrLWNp~rg~liktYsghG~EVlD~~~s~Dnskf-~s~GgDk~v~vwDV   88 (307)
T KOG0316|consen   10 LSILDCAQGAVRAVRYNVDGNYCLTCGSDRTVRLWNPLRGALIKTYSGHGHEVLDAALSSDNSKF-ASCGGDKAVQVWDV   88 (307)
T ss_pred             ceeecccccceEEEEEccCCCEEEEcCCCceEEeecccccceeeeecCCCceeeecccccccccc-ccCCCCceEEEEEc
Confidence            34567899999999999999999999999999999999999999999999999999988887765 68889999999999


Q ss_pred             CCcceeeeecCCCCCCCCCCccCCCCcceEEEEECCCCCEEEEecCCCcEEEEEcccc--eeeeeecCCccceEEEEEcC
Q 021247          133 ATWNLIATLSIPRPEGLKPTDKSSSKKFVLSVAWSPDGRRIACGSMDGTISVFDVTRA--KFLHHLEGHFMPVRSLVYSP  210 (315)
Q Consensus       133 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~s~dg~i~i~d~~~~--~~~~~~~~~~~~v~~~~~~~  210 (315)
                      .+++.+..+.             +|...|+.+.|+.+...+++|+.|..+++||-+..  ++++.+......|.++... 
T Consensus        89 ~TGkv~Rr~r-------------gH~aqVNtV~fNeesSVv~SgsfD~s~r~wDCRS~s~ePiQildea~D~V~Si~v~-  154 (307)
T KOG0316|consen   89 NTGKVDRRFR-------------GHLAQVNTVRFNEESSVVASGSFDSSVRLWDCRSRSFEPIQILDEAKDGVSSIDVA-  154 (307)
T ss_pred             ccCeeeeecc-------------cccceeeEEEecCcceEEEeccccceeEEEEcccCCCCccchhhhhcCceeEEEec-
Confidence            9999988774             34556999999999999999999999999998754  5677777777888888875 


Q ss_pred             CCCcEEEEEeCCCeEEEEeCCCCeeEEEeecccccEEEEEEcCCCCeEEEEeCCCcEEEEecCccceehcccccccceE-
Q 021247          211 VDPRVLFSASDDTHVHMYDAEGKSLVTAMSGHASWVLSVDASPDGAAITTGSSDRTVKLWDLNMRAAMQSMTNHTDQVW-  289 (315)
Q Consensus       211 ~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~-  289 (315)
                        ...+++|+.||+++.||++.+++...+.+|  +|+++.|+++++.++.++.|+++++.|-.+++.++.+.+|...-. 
T Consensus       155 --~heIvaGS~DGtvRtydiR~G~l~sDy~g~--pit~vs~s~d~nc~La~~l~stlrLlDk~tGklL~sYkGhkn~eyk  230 (307)
T KOG0316|consen  155 --EHEIVAGSVDGTVRTYDIRKGTLSSDYFGH--PITSVSFSKDGNCSLASSLDSTLRLLDKETGKLLKSYKGHKNMEYK  230 (307)
T ss_pred             --ccEEEeeccCCcEEEEEeecceeehhhcCC--cceeEEecCCCCEEEEeeccceeeecccchhHHHHHhcccccceee
Confidence              457999999999999999999887776655  699999999999999999999999999999999999999975433 


Q ss_pred             -EEEEeeCCCEEEEEeCCCcEEEeec
Q 021247          290 -GVSFRPLGGRVVSVSDDKSISLYEY  314 (315)
Q Consensus       290 -~~~~s~~~~~l~s~~~d~~i~i~~~  314 (315)
                       .+.++....++++|++||.+.+||+
T Consensus       231 ldc~l~qsdthV~sgSEDG~Vy~wdL  256 (307)
T KOG0316|consen  231 LDCCLNQSDTHVFSGSEDGKVYFWDL  256 (307)
T ss_pred             eeeeecccceeEEeccCCceEEEEEe
Confidence             4566666778999999999999996

>KOG1407 consensus WD40 repeat protein [Function unknown]

Probab=100.00  E-value=8.3e-34  Score=213.38  Aligned_cols=284  Identities=19%  Similarity=0.323  Sum_probs=243.0

Q ss_pred             hhhccccceEEEEEeecCCCCCcEEEEeeCCCcEEEEcCCCCcceee--ccccccceEEEEeCCC-CCEEEEeeCCCeEE
Q 021247            9 VENAHEESVWAVTWVPATETRPALLLTGSLDETVKLWRPDDMQLERT--NTGHCLGVVSVAAHPS-GIIAASASLDSFVR   85 (315)
Q Consensus         9 ~~~~h~~~v~~v~~~~~~~~~~~~l~sgs~d~~v~~w~~~~~~~~~~--~~~h~~~v~~~~~~~~-g~~l~s~~~d~~i~   85 (315)
                      -..+|...|-.|+|.-.+.    .|++|+.|+++++|+.+...+.+.  ..+|.+.|..++++|. ..++++++.|++|+
T Consensus        15 ~~~~~~~~v~Sv~wn~~g~----~lasgs~dktv~v~n~e~~r~~~~~~~~gh~~svdql~w~~~~~d~~atas~dk~ir   90 (313)
T KOG1407|consen   15 ELQGHVQKVHSVAWNCDGT----KLASGSFDKTVSVWNLERDRFRKELVYRGHTDSVDQLCWDPKHPDLFATASGDKTIR   90 (313)
T ss_pred             HhhhhhhcceEEEEcccCc----eeeecccCCceEEEEecchhhhhhhcccCCCcchhhheeCCCCCcceEEecCCceEE
Confidence            3468999999999998776    599999999999999876655443  4689999999999875 47999999999999


Q ss_pred             EEECCCCceeEEeeCCcccEEEEEECCCCCeEEEEecCCCeEEEEecCCcceeeeecCCCCCCCCCCccCCCCcceEEEE
Q 021247           86 VFDVDTNASIATLEASPSEVWQMQFDPKGTTLAVAGGGSASVKLWDTATWNLIATLSIPRPEGLKPTDKSSSKKFVLSVA  165 (315)
Q Consensus        86 ~w~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~  165 (315)
                      +||.+.+++...+....+.+ .+.|+|+|++++ .++.|..|...|.++.+.+....              .+..+..++
T Consensus        91 ~wd~r~~k~~~~i~~~~eni-~i~wsp~g~~~~-~~~kdD~it~id~r~~~~~~~~~--------------~~~e~ne~~  154 (313)
T KOG1407|consen   91 IWDIRSGKCTARIETKGENI-NITWSPDGEYIA-VGNKDDRITFIDARTYKIVNEEQ--------------FKFEVNEIS  154 (313)
T ss_pred             EEEeccCcEEEEeeccCcce-EEEEcCCCCEEE-EecCcccEEEEEecccceeehhc--------------ccceeeeee
Confidence            99999999988877655544 578999999875 56788899999998866654432              223477899


Q ss_pred             ECCCCCEEEEecCCCcEEEEEcccceeeeeecCCccceEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCeeEEEeeccccc
Q 021247          166 WSPDGRRIACGSMDGTISVFDVTRAKFLHHLEGHFMPVRSLVYSPVDPRVLFSASDDTHVHMYDAEGKSLVTAMSGHASW  245 (315)
Q Consensus       166 ~~~~~~~l~~~s~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~  245 (315)
                      |+.+++.|+.....|.|.|......+++..++.|.....+|.|+| +++++++|+.|-.+-+||++..-++..+..+.=+
T Consensus       155 w~~~nd~Fflt~GlG~v~ILsypsLkpv~si~AH~snCicI~f~p-~GryfA~GsADAlvSLWD~~ELiC~R~isRldwp  233 (313)
T KOG1407|consen  155 WNNSNDLFFLTNGLGCVEILSYPSLKPVQSIKAHPSNCICIEFDP-DGRYFATGSADALVSLWDVDELICERCISRLDWP  233 (313)
T ss_pred             ecCCCCEEEEecCCceEEEEeccccccccccccCCcceEEEEECC-CCceEeeccccceeeccChhHhhhheeeccccCc
Confidence            998888888888889999999988999999999999999999999 7889999999999999999887777777778888


Q ss_pred             EEEEEEcCCCCeEEEEeCCCcEEEEecCccceehcccccccceEEEEEeeCCCEEEEEeCC---------CcEEEeec
Q 021247          246 VLSVDASPDGAAITTGSSDRTVKLWDLNMRAAMQSMTNHTDQVWGVSFRPLGGRVVSVSDD---------KSISLYEY  314 (315)
Q Consensus       246 i~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d---------~~i~i~~~  314 (315)
                      |..+.|+.+|++||+|+.|..|-|=++.+|..+..++ ++++...|+|+|....||-+++|         |+++||-+
T Consensus       234 VRTlSFS~dg~~lASaSEDh~IDIA~vetGd~~~eI~-~~~~t~tVAWHPk~~LLAyA~ddk~~d~~reag~vKiFG~  310 (313)
T KOG1407|consen  234 VRTLSFSHDGRMLASASEDHFIDIAEVETGDRVWEIP-CEGPTFTVAWHPKRPLLAYACDDKDGDSNREAGTVKIFGL  310 (313)
T ss_pred             eEEEEeccCcceeeccCccceEEeEecccCCeEEEee-ccCCceeEEecCCCceeeEEecCCCCccccccceeEEecC
Confidence            9999999999999999999999999999999888774 67899999999999989877765         57888765

>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=3.7e-34  Score=240.03  Aligned_cols=267  Identities=19%  Similarity=0.314  Sum_probs=231.0

Q ss_pred             EEEEeeCCCcEEEEcCCCCcceeeccccccceEEEEeCCCCCEEEEeeCCCeEEEEECCCCceeEEeeC-CcccEEEEEE
Q 021247           32 LLLTGSLDETVKLWRPDDMQLERTNTGHCLGVVSVAAHPSGIIAASASLDSFVRVFDVDTNASIATLEA-SPSEVWQMQF  110 (315)
Q Consensus        32 ~l~sgs~d~~v~~w~~~~~~~~~~~~~h~~~v~~~~~~~~g~~l~s~~~d~~i~~w~~~~~~~~~~~~~-~~~~v~~~~~  110 (315)
                      +++. +.+..|++|+..+.+.......+...|+++.++++|.+|+.|..+|.|.|||....+.+..+.. |...|-+++|
T Consensus       190 ~laV-alg~~vylW~~~s~~v~~l~~~~~~~vtSv~ws~~G~~LavG~~~g~v~iwD~~~~k~~~~~~~~h~~rvg~laW  268 (484)
T KOG0305|consen  190 VLAV-ALGQSVYLWSASSGSVTELCSFGEELVTSVKWSPDGSHLAVGTSDGTVQIWDVKEQKKTRTLRGSHASRVGSLAW  268 (484)
T ss_pred             eEEE-EecceEEEEecCCCceEEeEecCCCceEEEEECCCCCEEEEeecCCeEEEEehhhccccccccCCcCceeEEEec
Confidence            3444 5567899999888876666555588999999999999999999999999999999988888888 8899999999


Q ss_pred             CCCCCeEEEEecCCCeEEEEecCCcceeeeecCCCCCCCCCCccCCCCcceEEEEECCCCCEEEEecCCCcEEEEEcccc
Q 021247          111 DPKGTTLAVAGGGSASVKLWDTATWNLIATLSIPRPEGLKPTDKSSSKKFVLSVAWSPDGRRIACGSMDGTISVFDVTRA  190 (315)
Q Consensus       111 ~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~s~dg~i~i~d~~~~  190 (315)
                      +.   .++.+|+.++.|..+|++..+....            ....|...|..+.|++++++||+|+.|+.+.|||....
T Consensus       269 ~~---~~lssGsr~~~I~~~dvR~~~~~~~------------~~~~H~qeVCgLkws~d~~~lASGgnDN~~~Iwd~~~~  333 (484)
T KOG0305|consen  269 NS---SVLSSGSRDGKILNHDVRISQHVVS------------TLQGHRQEVCGLKWSPDGNQLASGGNDNVVFIWDGLSP  333 (484)
T ss_pred             cC---ceEEEecCCCcEEEEEEecchhhhh------------hhhcccceeeeeEECCCCCeeccCCCccceEeccCCCc
Confidence            83   3678999999999999987554332            12356677999999999999999999999999999888


Q ss_pred             eeeeeecCCccceEEEEEcCCCCcEEEEEe--CCCeEEEEeCCCCeeEEEeecccccEEEEEEcCCCCeEEEE--eCCCc
Q 021247          191 KFLHHLEGHFMPVRSLVYSPVDPRVLFSAS--DDTHVHMYDAEGKSLVTAMSGHASWVLSVDASPDGAAITTG--SSDRT  266 (315)
Q Consensus       191 ~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~--~d~~i~~wd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~--~~d~~  266 (315)
                      .+...+..|...|.+++|+|..+.+|++|+  .|++|++||..++..+..+.. ...|..|.|++..+-|+++  -.++.
T Consensus       334 ~p~~~~~~H~aAVKA~awcP~q~~lLAsGGGs~D~~i~fwn~~~g~~i~~vdt-gsQVcsL~Wsk~~kEi~sthG~s~n~  412 (484)
T KOG0305|consen  334 EPKFTFTEHTAAVKALAWCPWQSGLLATGGGSADRCIKFWNTNTGARIDSVDT-GSQVCSLIWSKKYKELLSTHGYSENQ  412 (484)
T ss_pred             cccEEEeccceeeeEeeeCCCccCceEEcCCCcccEEEEEEcCCCcEeccccc-CCceeeEEEcCCCCEEEEecCCCCCc
Confidence            888999999999999999999999999886  599999999998887766553 4669999999987555443  44678


Q ss_pred             EEEEecCccceehcccccccceEEEEEeeCCCEEEEEeCCCcEEEeecC
Q 021247          267 VKLWDLNMRAAMQSMTNHTDQVWGVSFRPLGGRVVSVSDDKSISLYEYS  315 (315)
Q Consensus       267 i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~i~i~~~~  315 (315)
                      |.||+..+.+++..+.+|...|..+++||||..+++++.|.++++|++.
T Consensus       413 i~lw~~ps~~~~~~l~gH~~RVl~la~SPdg~~i~t~a~DETlrfw~~f  461 (484)
T KOG0305|consen  413 ITLWKYPSMKLVAELLGHTSRVLYLALSPDGETIVTGAADETLRFWNLF  461 (484)
T ss_pred             EEEEeccccceeeeecCCcceeEEEEECCCCCEEEEecccCcEEecccc
Confidence            9999999999999999999999999999999999999999999999863

>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]

Probab=100.00  E-value=3.6e-34  Score=248.40  Aligned_cols=273  Identities=29%  Similarity=0.407  Sum_probs=242.2

Q ss_pred             cccceEEEEEeecCCCCCcEEEEeeCCCcEEEEcCCCCcceee-ccccccceEEEEeCCCCCEEEEeeCCCeEEEEECCC
Q 021247           13 HEESVWAVTWVPATETRPALLLTGSLDETVKLWRPDDMQLERT-NTGHCLGVVSVAAHPSGIIAASASLDSFVRVFDVDT   91 (315)
Q Consensus        13 h~~~v~~v~~~~~~~~~~~~l~sgs~d~~v~~w~~~~~~~~~~-~~~h~~~v~~~~~~~~g~~l~s~~~d~~i~~w~~~~   91 (315)
                      |...+.+..|.+      ..+++++.|.+|++|+..+...... +.||.++|.++++...+.++++|+.|.++++||..+
T Consensus       207 ~~~~~~~~q~~~------~~~~~~s~~~tl~~~~~~~~~~i~~~l~GH~g~V~~l~~~~~~~~lvsgS~D~t~rvWd~~s  280 (537)
T KOG0274|consen  207 DDHVVLCLQLHD------GFFKSGSDDSTLHLWDLNNGYLILTRLVGHFGGVWGLAFPSGGDKLVSGSTDKTERVWDCST  280 (537)
T ss_pred             Ccchhhhheeec------CeEEecCCCceeEEeecccceEEEeeccCCCCCceeEEEecCCCEEEEEecCCcEEeEecCC
Confidence            566888888873      2599999999999999988887777 999999999999988789999999999999999999


Q ss_pred             CceeEEeeCCcccEEEEEECCCCCeEEEEecCCCeEEEEecCCcceeeeecCCCCCCCCCCccCCCCcceEEEEECCCCC
Q 021247           92 NASIATLEASPSEVWQMQFDPKGTTLAVAGGGSASVKLWDTATWNLIATLSIPRPEGLKPTDKSSSKKFVLSVAWSPDGR  171 (315)
Q Consensus        92 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~  171 (315)
                      +++...+.+|.+.+.++...+.   ..++|+.|.+|++|++.+++.+..+.             +|...|+++..+  +.
T Consensus       281 g~C~~~l~gh~stv~~~~~~~~---~~~sgs~D~tVkVW~v~n~~~l~l~~-------------~h~~~V~~v~~~--~~  342 (537)
T KOG0274|consen  281 GECTHSLQGHTSSVRCLTIDPF---LLVSGSRDNTVKVWDVTNGACLNLLR-------------GHTGPVNCVQLD--EP  342 (537)
T ss_pred             CcEEEEecCCCceEEEEEccCc---eEeeccCCceEEEEeccCcceEEEec-------------cccccEEEEEec--CC
Confidence            9999999999999999887653   56788999999999999888877663             255669999987  78


Q ss_pred             EEEEecCCCcEEEEEcccceeeeeecCCccceEEEEEcCCCCcEEEEEeCCCeEEEEeCCCC-eeEEEeecccccEEEEE
Q 021247          172 RIACGSMDGTISVFDVTRAKFLHHLEGHFMPVRSLVYSPVDPRVLFSASDDTHVHMYDAEGK-SLVTAMSGHASWVLSVD  250 (315)
Q Consensus       172 ~l~~~s~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~-~~~~~~~~~~~~i~~~~  250 (315)
                      ++++|+.|+.|++||+++++++..+.+|...|.++.+.+.  ..+++|+.|++|++||+++. +++..+.+|..-+..+.
T Consensus       343 ~lvsgs~d~~v~VW~~~~~~cl~sl~gH~~~V~sl~~~~~--~~~~Sgs~D~~IkvWdl~~~~~c~~tl~~h~~~v~~l~  420 (537)
T KOG0274|consen  343 LLVSGSYDGTVKVWDPRTGKCLKSLSGHTGRVYSLIVDSE--NRLLSGSLDTTIKVWDLRTKRKCIHTLQGHTSLVSSLL  420 (537)
T ss_pred             EEEEEecCceEEEEEhhhceeeeeecCCcceEEEEEecCc--ceEEeeeeccceEeecCCchhhhhhhhcCCcccccccc
Confidence            9999999999999999999999999999999999987652  78999999999999999999 89999999998886665


Q ss_pred             EcCCCCeEEEEeCCCcEEEEecCccceehcccc-cccceEEEEEeeCCCEEEEEeCCCcEEEeecC
Q 021247          251 ASPDGAAITTGSSDRTVKLWDLNMRAAMQSMTN-HTDQVWGVSFRPLGGRVVSVSDDKSISLYEYS  315 (315)
Q Consensus       251 ~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~-~~~~v~~~~~s~~~~~l~s~~~d~~i~i~~~~  315 (315)
                      +  .++.|++++.|++|++||...++.++++.+ |...|+.+.+.  ...+++++.|+++++||+.
T Consensus       421 ~--~~~~Lvs~~aD~~Ik~WD~~~~~~~~~~~~~~~~~v~~l~~~--~~~il~s~~~~~~~l~dl~  482 (537)
T KOG0274|consen  421 L--RDNFLVSSSADGTIKLWDAEEGECLRTLEGRHVGGVSALALG--KEEILCSSDDGSVKLWDLR  482 (537)
T ss_pred             c--ccceeEeccccccEEEeecccCceeeeeccCCcccEEEeecC--cceEEEEecCCeeEEEecc
Confidence            4  467899999999999999999999999888 66888888876  3589999999999999973

>PLN00181 protein SPA1-RELATED; Provisional

Probab=100.00  E-value=1.4e-33  Score=261.92  Aligned_cols=260  Identities=20%  Similarity=0.326  Sum_probs=215.1

Q ss_pred             CCcEEEEcCCCCcceee-----ccccccceEEEEeCCCCCEEEEeeCCCeEEEEECCCC----c----eeEEeeCCcccE
Q 021247           39 DETVKLWRPDDMQLERT-----NTGHCLGVVSVAAHPSGIIAASASLDSFVRVFDVDTN----A----SIATLEASPSEV  105 (315)
Q Consensus        39 d~~v~~w~~~~~~~~~~-----~~~h~~~v~~~~~~~~g~~l~s~~~d~~i~~w~~~~~----~----~~~~~~~~~~~v  105 (315)
                      +|-+++|+.........     +..|...|.+++|+|+|.++++|+.|++|++|++...    .    ....+. +...+
T Consensus       457 ~gl~~~~~~~~~~~~~~~~~~~~~~~~~~V~~i~fs~dg~~latgg~D~~I~iwd~~~~~~~~~~~~~~~~~~~-~~~~v  535 (793)
T PLN00181        457 EGLCKYLSFSKLRVKADLKQGDLLNSSNLVCAIGFDRDGEFFATAGVNKKIKIFECESIIKDGRDIHYPVVELA-SRSKL  535 (793)
T ss_pred             hhhhhhhcccceEEEEeeccccccCCCCcEEEEEECCCCCEEEEEeCCCEEEEEECCcccccccccccceEEec-ccCce
Confidence            67788888765544322     3458889999999999999999999999999997542    1    112222 34578


Q ss_pred             EEEEECCCCCeEEEEecCCCeEEEEecCCcceeeeecCCCCCCCCCCccCCCCcceEEEEECC-CCCEEEEecCCCcEEE
Q 021247          106 WQMQFDPKGTTLAVAGGGSASVKLWDTATWNLIATLSIPRPEGLKPTDKSSSKKFVLSVAWSP-DGRRIACGSMDGTISV  184 (315)
Q Consensus       106 ~~~~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~s~dg~i~i  184 (315)
                      .+++|+|.....+++++.|++|++||+.+++.+..+.             .|...|.+++|+| ++.+|++|+.|+.|++
T Consensus       536 ~~l~~~~~~~~~las~~~Dg~v~lWd~~~~~~~~~~~-------------~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~i  602 (793)
T PLN00181        536 SGICWNSYIKSQVASSNFEGVVQVWDVARSQLVTEMK-------------EHEKRVWSIDYSSADPTLLASGSDDGSVKL  602 (793)
T ss_pred             eeEEeccCCCCEEEEEeCCCeEEEEECCCCeEEEEec-------------CCCCCEEEEEEcCCCCCEEEEEcCCCEEEE
Confidence            8999998655567888999999999998877665542             3455699999997 7889999999999999


Q ss_pred             EEcccceeeeeecCCccceEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCe-eEEEeecccccEEEEEEcCCCCeEEEEeC
Q 021247          185 FDVTRAKFLHHLEGHFMPVRSLVYSPVDPRVLFSASDDTHVHMYDAEGKS-LVTAMSGHASWVLSVDASPDGAAITTGSS  263 (315)
Q Consensus       185 ~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~-~~~~~~~~~~~i~~~~~~~~~~~l~s~~~  263 (315)
                      ||++++..+..+..+ ..+.++.|++.++.++++|+.|+.|++||++... .+..+.+|...|.++.|. ++.+|++++.
T Consensus       603 Wd~~~~~~~~~~~~~-~~v~~v~~~~~~g~~latgs~dg~I~iwD~~~~~~~~~~~~~h~~~V~~v~f~-~~~~lvs~s~  680 (793)
T PLN00181        603 WSINQGVSIGTIKTK-ANICCVQFPSESGRSLAFGSADHKVYYYDLRNPKLPLCTMIGHSKTVSYVRFV-DSSTLVSSST  680 (793)
T ss_pred             EECCCCcEEEEEecC-CCeEEEEEeCCCCCEEEEEeCCCeEEEEECCCCCccceEecCCCCCEEEEEEe-CCCEEEEEEC
Confidence            999988888777654 5789999977788999999999999999998654 456678899999999997 6788999999


Q ss_pred             CCcEEEEecCcc------ceehcccccccceEEEEEeeCCCEEEEEeCCCcEEEeec
Q 021247          264 DRTVKLWDLNMR------AAMQSMTNHTDQVWGVSFRPLGGRVVSVSDDKSISLYEY  314 (315)
Q Consensus       264 d~~i~iwd~~~~------~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~i~i~~~  314 (315)
                      |++|++||+...      ..+.++.+|...++.++|+|++.+|++++.|++|+||+.
T Consensus       681 D~~ikiWd~~~~~~~~~~~~l~~~~gh~~~i~~v~~s~~~~~lasgs~D~~v~iw~~  737 (793)
T PLN00181        681 DNTLKLWDLSMSISGINETPLHSFMGHTNVKNFVGLSVSDGYIATGSETNEVFVYHK  737 (793)
T ss_pred             CCEEEEEeCCCCccccCCcceEEEcCCCCCeeEEEEcCCCCEEEEEeCCCEEEEEEC
Confidence            999999999742      456778899999999999999999999999999999984

>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto

Probab=100.00  E-value=4.5e-33  Score=228.76  Aligned_cols=246  Identities=35%  Similarity=0.545  Sum_probs=216.5

Q ss_pred             eeccccccceEEEEeCCCCCEEEEeeCCCeEEEEECCCCceeEEeeCCcccEEEEEECCCCCeEEEEecCCCeEEEEecC
Q 021247           54 RTNTGHCLGVVSVAAHPSGIIAASASLDSFVRVFDVDTNASIATLEASPSEVWQMQFDPKGTTLAVAGGGSASVKLWDTA  133 (315)
Q Consensus        54 ~~~~~h~~~v~~~~~~~~g~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~~d~~  133 (315)
                      +.+.+|..+|.++.++|++.++++++.|+.+++|++.+++....+..+...+..+.|+|+++.+ ++++.++.+++||+.
T Consensus         3 ~~~~~h~~~i~~~~~~~~~~~l~~~~~~g~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l-~~~~~~~~i~i~~~~   81 (289)
T cd00200           3 RTLKGHTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGELLRTLKGHTGPVRDVAASADGTYL-ASGSSDKTIRLWDLE   81 (289)
T ss_pred             hHhcccCCCEEEEEEcCCCCEEEEeecCcEEEEEEeeCCCcEEEEecCCcceeEEEECCCCCEE-EEEcCCCeEEEEEcC
Confidence            3456899999999999999999999999999999999888777888888889999999998654 567789999999998


Q ss_pred             CcceeeeecCCCCCCCCCCccCCCCcceEEEEECCCCCEEEEecCCCcEEEEEcccceeeeeecCCccceEEEEEcCCCC
Q 021247          134 TWNLIATLSIPRPEGLKPTDKSSSKKFVLSVAWSPDGRRIACGSMDGTISVFDVTRAKFLHHLEGHFMPVRSLVYSPVDP  213 (315)
Q Consensus       134 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~s~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~  213 (315)
                      ..+.+..+.             .+...+.++.|+++++++++++.++.+++||+++++....+..|...+.++.|+|. +
T Consensus        82 ~~~~~~~~~-------------~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-~  147 (289)
T cd00200          82 TGECVRTLT-------------GHTSYVSSVAFSPDGRILSSSSRDKTIKVWDVETGKCLTTLRGHTDWVNSVAFSPD-G  147 (289)
T ss_pred             cccceEEEe-------------ccCCcEEEEEEcCCCCEEEEecCCCeEEEEECCCcEEEEEeccCCCcEEEEEEcCc-C
Confidence            765554442             23345899999999888888888999999999988888888889999999999984 6


Q ss_pred             cEEEEEeCCCeEEEEeCCCCeeEEEeecccccEEEEEEcCCCCeEEEEeCCCcEEEEecCccceehcccccccceEEEEE
Q 021247          214 RVLFSASDDTHVHMYDAEGKSLVTAMSGHASWVLSVDASPDGAAITTGSSDRTVKLWDLNMRAAMQSMTNHTDQVWGVSF  293 (315)
Q Consensus       214 ~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~  293 (315)
                      .++++++.|+.+++||.+..+.+..+..|...+.++.|+|+++.+++++.|+.|++||++.++.+..+..|...+.++.|
T Consensus       148 ~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~  227 (289)
T cd00200         148 TFVASSSQDGTIKLWDLRTGKCVATLTGHTGEVNSVAFSPDGEKLLSSSSDGTIKLWDLSTGKCLGTLRGHENGVNSVAF  227 (289)
T ss_pred             CEEEEEcCCCcEEEEEccccccceeEecCccccceEEECCCcCEEEEecCCCcEEEEECCCCceecchhhcCCceEEEEE
Confidence            78888888999999999988888888889889999999999999999999999999999988888888788889999999


Q ss_pred             eeCCCEEEEEeCCCcEEEeec
Q 021247          294 RPLGGRVVSVSDDKSISLYEY  314 (315)
Q Consensus       294 s~~~~~l~s~~~d~~i~i~~~  314 (315)
                      +|++.++++++.|+.|++|++
T Consensus       228 ~~~~~~~~~~~~~~~i~i~~~  248 (289)
T cd00200         228 SPDGYLLASGSEDGTIRVWDL  248 (289)
T ss_pred             cCCCcEEEEEcCCCcEEEEEc
Confidence            999888888888999999986

>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]

Probab=100.00  E-value=8.7e-34  Score=217.37  Aligned_cols=277  Identities=21%  Similarity=0.285  Sum_probs=218.8

Q ss_pred             hhhccccceEEEEEeecCCCCCcEEEEeeCCCcEEEEcCCCC-c-ceeeccccccceEEEEeCCCCCEEEEeeCCCeEEE
Q 021247            9 VENAHEESVWAVTWVPATETRPALLLTGSLDETVKLWRPDDM-Q-LERTNTGHCLGVVSVAAHPSGIIAASASLDSFVRV   86 (315)
Q Consensus         9 ~~~~h~~~v~~v~~~~~~~~~~~~l~sgs~d~~v~~w~~~~~-~-~~~~~~~h~~~v~~~~~~~~g~~l~s~~~d~~i~~   86 (315)
                      |....++.|.+++|+|..   ..++++||+||+||+|+.+.. . ..+....|.++|.+++|+.+|..+++|+.|+.+++
T Consensus        22 v~~pP~DsIS~l~FSP~~---~~~~~A~SWD~tVR~wevq~~g~~~~ka~~~~~~PvL~v~WsddgskVf~g~~Dk~~k~   98 (347)
T KOG0647|consen   22 VPNPPEDSISALAFSPQA---DNLLAAGSWDGTVRIWEVQNSGQLVPKAQQSHDGPVLDVCWSDDGSKVFSGGCDKQAKL   98 (347)
T ss_pred             cCCCcccchheeEecccc---CceEEecccCCceEEEEEecCCcccchhhhccCCCeEEEEEccCCceEEeeccCCceEE
Confidence            455778999999999943   347889999999999998763 2 23455679999999999999999999999999999


Q ss_pred             EECCCCceeEEeeCCcccEEEEEECCCCC-eEEEEecCCCeEEEEecCCcceeeeecCCCCCCCCCCccCCCCcceEEEE
Q 021247           87 FDVDTNASIATLEASPSEVWQMQFDPKGT-TLAVAGGGSASVKLWDTATWNLIATLSIPRPEGLKPTDKSSSKKFVLSVA  165 (315)
Q Consensus        87 w~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~  165 (315)
                      ||+.+++. ..+..|..+|..+.|-+..+ .++++|++|.+|+.||+|..+++.++.+|+.              +.++.
T Consensus        99 wDL~S~Q~-~~v~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~pv~t~~LPeR--------------vYa~D  163 (347)
T KOG0647|consen   99 WDLASGQV-SQVAAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSNPVATLQLPER--------------VYAAD  163 (347)
T ss_pred             EEccCCCe-eeeeecccceeEEEEecCCCcceeEecccccceeecccCCCCeeeeeeccce--------------eeehh
Confidence            99999954 56778999999999976544 3678999999999999999999888877643              33333


Q ss_pred             ECCCCCEEEEecCCCcEEEEEcccceeeee--ecCCccceEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCee--EEEeec
Q 021247          166 WSPDGRRIACGSMDGTISVFDVTRAKFLHH--LEGHFMPVRSLVYSPVDPRVLFSASDDTHVHMYDAEGKSL--VTAMSG  241 (315)
Q Consensus       166 ~~~~~~~l~~~s~dg~i~i~d~~~~~~~~~--~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~--~~~~~~  241 (315)
                      .  ....++++..++.|.+|+|+.+.....  ...-+-.+++++..+ +....+.|+-+|.+-+..+..+..  --.+..
T Consensus       164 v--~~pm~vVata~r~i~vynL~n~~te~k~~~SpLk~Q~R~va~f~-d~~~~alGsiEGrv~iq~id~~~~~~nFtFkC  240 (347)
T KOG0647|consen  164 V--LYPMAVVATAERHIAVYNLENPPTEFKRIESPLKWQTRCVACFQ-DKDGFALGSIEGRVAIQYIDDPNPKDNFTFKC  240 (347)
T ss_pred             c--cCceeEEEecCCcEEEEEcCCCcchhhhhcCcccceeeEEEEEe-cCCceEeeeecceEEEEecCCCCccCceeEEE
Confidence            2  345788888999999999975543211  112234578888887 444568899999998887766422  222334


Q ss_pred             cc---------ccEEEEEEcCCCCeEEEEeCCCcEEEEecCccceehcccccccceEEEEEeeCCCEEE-EEeCC
Q 021247          242 HA---------SWVLSVDASPDGAAITTGSSDRTVKLWDLNMRAAMQSMTNHTDQVWGVSFRPLGGRVV-SVSDD  306 (315)
Q Consensus       242 ~~---------~~i~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~-s~~~d  306 (315)
                      |.         -.|++++|+|....|+|+|.||++.+||-+.+..+++.+.|..+|+++.|+.+|.++| +.|.|
T Consensus       241 HR~~~~~~~~VYaVNsi~FhP~hgtlvTaGsDGtf~FWDkdar~kLk~s~~~~qpItcc~fn~~G~ifaYA~gYD  315 (347)
T KOG0647|consen  241 HRSTNSVNDDVYAVNSIAFHPVHGTLVTAGSDGTFSFWDKDARTKLKTSETHPQPITCCSFNRNGSIFAYALGYD  315 (347)
T ss_pred             eccCCCCCCceEEecceEeecccceEEEecCCceEEEecchhhhhhhccCcCCCccceeEecCCCCEEEEEeecc
Confidence            42         2477899999888999999999999999999999999999999999999999999886 55544

>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=1.5e-32  Score=212.06  Aligned_cols=288  Identities=18%  Similarity=0.257  Sum_probs=235.1

Q ss_pred             ccchhhhhhccccceEEEEEeecCCCCCcEEEEeeCCCcEEEEcCCCCcceeeccccccceEEEEeCCCCCEEEEeeC--
Q 021247            3 FAGLKSVENAHEESVWAVTWVPATETRPALLLTGSLDETVKLWRPDDMQLERTNTGHCLGVVSVAAHPSGIIAASASL--   80 (315)
Q Consensus         3 ~~~~~~~~~~h~~~v~~v~~~~~~~~~~~~l~sgs~d~~v~~w~~~~~~~~~~~~~h~~~v~~~~~~~~g~~l~s~~~--   80 (315)
                      ++....+.+.-...|+++.|++.+.    .+++++.|.+++|||..+++..+.+..++-++..++|......++.++.  
T Consensus         3 s~~~ak~f~~~~~~i~sl~fs~~G~----~litss~dDsl~LYd~~~g~~~~ti~skkyG~~~~~Fth~~~~~i~sStk~   78 (311)
T KOG1446|consen    3 SFRPAKVFRETNGKINSLDFSDDGL----LLITSSEDDSLRLYDSLSGKQVKTINSKKYGVDLACFTHHSNTVIHSSTKE   78 (311)
T ss_pred             ccccccccccCCCceeEEEecCCCC----EEEEecCCCeEEEEEcCCCceeeEeecccccccEEEEecCCceEEEccCCC
Confidence            3444455555677999999999886    6888899999999999999999988888889999998776666666665  


Q ss_pred             CCeEEEEECCCCceeEEeeCCcccEEEEEECCCCCeEEEEecCCCeEEEEecCCcceeeeecCCCCCCCCCCccCCCCcc
Q 021247           81 DSFVRVFDVDTNASIATLEASPSEVWQMQFDPKGTTLAVAGGGSASVKLWDTATWNLIATLSIPRPEGLKPTDKSSSKKF  160 (315)
Q Consensus        81 d~~i~~w~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  160 (315)
                      |.+||..++.+++.++-+.+|...|..++.+|-+. .+++++.|.+|++||++..++...+.....              
T Consensus        79 d~tIryLsl~dNkylRYF~GH~~~V~sL~~sP~~d-~FlS~S~D~tvrLWDlR~~~cqg~l~~~~~--------------  143 (311)
T KOG1446|consen   79 DDTIRYLSLHDNKYLRYFPGHKKRVNSLSVSPKDD-TFLSSSLDKTVRLWDLRVKKCQGLLNLSGR--------------  143 (311)
T ss_pred             CCceEEEEeecCceEEEcCCCCceEEEEEecCCCC-eEEecccCCeEEeeEecCCCCceEEecCCC--------------
Confidence            89999999999999999999999999999999986 557899999999999997776655543322              


Q ss_pred             eEEEEECCCCCEEEEecCCCcEEEEEcccce--eeeeec---CCccceEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCee
Q 021247          161 VLSVAWSPDGRRIACGSMDGTISVFDVTRAK--FLHHLE---GHFMPVRSLVYSPVDPRVLFSASDDTHVHMYDAEGKSL  235 (315)
Q Consensus       161 i~~~~~~~~~~~l~~~s~dg~i~i~d~~~~~--~~~~~~---~~~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~  235 (315)
                       ..++|.|+|-.+|++.....|++||++.-.  +...+.   ..+.....+.|+| +++.++.+...+.+++.|.-.+.+
T Consensus       144 -pi~AfDp~GLifA~~~~~~~IkLyD~Rs~dkgPF~tf~i~~~~~~ew~~l~FS~-dGK~iLlsT~~s~~~~lDAf~G~~  221 (311)
T KOG1446|consen  144 -PIAAFDPEGLIFALANGSELIKLYDLRSFDKGPFTTFSITDNDEAEWTDLEFSP-DGKSILLSTNASFIYLLDAFDGTV  221 (311)
T ss_pred             -cceeECCCCcEEEEecCCCeEEEEEecccCCCCceeEccCCCCccceeeeEEcC-CCCEEEEEeCCCcEEEEEccCCcE
Confidence             268999999999999888899999997542  222222   3466789999998 778888888999999999998888


Q ss_pred             EEEeecccccE---EEEEEcCCCCeEEEEeCCCcEEEEecCccceehcccc-cccceEEEEEeeCCCEEEEEeCCCcEEE
Q 021247          236 VTAMSGHASWV---LSVDASPDGAAITTGSSDRTVKLWDLNMRAAMQSMTN-HTDQVWGVSFRPLGGRVVSVSDDKSISL  311 (315)
Q Consensus       236 ~~~~~~~~~~i---~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~-~~~~v~~~~~s~~~~~l~s~~~d~~i~i  311 (315)
                      +..+..+...-   ....|+|+++++++|+.||+|.+|+++++..+..+.+ +..++.++.|+|.-  ...++++..+-+
T Consensus       222 ~~tfs~~~~~~~~~~~a~ftPds~Fvl~gs~dg~i~vw~~~tg~~v~~~~~~~~~~~~~~~fnP~~--~mf~sa~s~l~f  299 (311)
T KOG1446|consen  222 KSTFSGYPNAGNLPLSATFTPDSKFVLSGSDDGTIHVWNLETGKKVAVLRGPNGGPVSCVRFNPRY--AMFVSASSNLVF  299 (311)
T ss_pred             eeeEeeccCCCCcceeEEECCCCcEEEEecCCCcEEEEEcCCCcEeeEecCCCCCCccccccCCce--eeeeecCceEEE
Confidence            88777654332   5678999999999999999999999999998888877 68899999999974  444455566766


Q ss_pred             ee
Q 021247          312 YE  313 (315)
Q Consensus       312 ~~  313 (315)
                      |=
T Consensus       300 w~  301 (311)
T KOG1446|consen  300 WL  301 (311)
T ss_pred             Ee
Confidence            64

>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]

Probab=100.00  E-value=7.3e-34  Score=223.89  Aligned_cols=247  Identities=27%  Similarity=0.418  Sum_probs=210.5

Q ss_pred             hhhccccceEEEEEeecCCCCCcEEEEeeCCCcEEEEcCCCCc----ceeeccccccceEEEEeCCCCCEEEEeeCCCeE
Q 021247            9 VENAHEESVWAVTWVPATETRPALLLTGSLDETVKLWRPDDMQ----LERTNTGHCLGVVSVAAHPSGIIAASASLDSFV   84 (315)
Q Consensus         9 ~~~~h~~~v~~v~~~~~~~~~~~~l~sgs~d~~v~~w~~~~~~----~~~~~~~h~~~v~~~~~~~~g~~l~s~~~d~~i   84 (315)
                      ...+|++++..++|.-... ....|++||.|.++++|..+...    ..+...||..+|.+++..++|.++++|+.|.+|
T Consensus       139 ~~~Ght~~ik~v~~v~~n~-~~~~fvsas~Dqtl~Lw~~~~~~~~~~~~~~~~GHk~~V~sVsv~~sgtr~~SgS~D~~l  217 (423)
T KOG0313|consen  139 TIVGHTGPIKSVAWVIKNS-SSCLFVSASMDQTLRLWKWNVGENKVKALKVCRGHKRSVDSVSVDSSGTRFCSGSWDTML  217 (423)
T ss_pred             EEecCCcceeeeEEEecCC-ccceEEEecCCceEEEEEecCchhhhhHHhHhcccccceeEEEecCCCCeEEeeccccee
Confidence            3569999999999986443 34479999999999999876543    234446999999999999999999999999999


Q ss_pred             EEEECCC-------------------------CceeEEeeCCcccEEEEEECCCCCeEEEEecCCCeEEEEecCCcceee
Q 021247           85 RVFDVDT-------------------------NASIATLEASPSEVWQMQFDPKGTTLAVAGGGSASVKLWDTATWNLIA  139 (315)
Q Consensus        85 ~~w~~~~-------------------------~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~  139 (315)
                      ++|+...                         ..++.++.+|..+|.++.|++.  ..+++++.|-+|+.||+.++..+.
T Consensus       218 kiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~P~vtl~GHt~~Vs~V~w~d~--~v~yS~SwDHTIk~WDletg~~~~  295 (423)
T KOG0313|consen  218 KIWSVETDEEDELESSSNRRRKKQKREKEGGTRTPLVTLEGHTEPVSSVVWSDA--TVIYSVSWDHTIKVWDLETGGLKS  295 (423)
T ss_pred             eecccCCCccccccccchhhhhhhhhhhcccccCceEEecccccceeeEEEcCC--CceEeecccceEEEEEeeccccee
Confidence            9999321                         1244567889999999999983  356899999999999999988776


Q ss_pred             eecCCCCCCCCCCccCCCCcceEEEEECCCCCEEEEecCCCcEEEEEcccce---eeeeecCCccceEEEEEcCCCCcEE
Q 021247          140 TLSIPRPEGLKPTDKSSSKKFVLSVAWSPDGRRIACGSMDGTISVFDVTRAK---FLHHLEGHFMPVRSLVYSPVDPRVL  216 (315)
Q Consensus       140 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~s~dg~i~i~d~~~~~---~~~~~~~~~~~v~~~~~~~~~~~~l  216 (315)
                      ++..+.              .+.++.++|..++|++|+.|..+++||.+++.   ..+.+.+|+.-|.++.|+|.+..+|
T Consensus       296 ~~~~~k--------------sl~~i~~~~~~~Ll~~gssdr~irl~DPR~~~gs~v~~s~~gH~nwVssvkwsp~~~~~~  361 (423)
T KOG0313|consen  296 TLTTNK--------------SLNCISYSPLSKLLASGSSDRHIRLWDPRTGDGSVVSQSLIGHKNWVSSVKWSPTNEFQL  361 (423)
T ss_pred             eeecCc--------------ceeEeecccccceeeecCCCCceeecCCCCCCCceeEEeeecchhhhhheecCCCCceEE
Confidence            654322              37899999999999999999999999998764   4577889999999999999999999


Q ss_pred             EEEeCCCeEEEEeCCCCe-eEEEeecccccEEEEEEcCCCCeEEEEeCCCcEEEEecC
Q 021247          217 FSASDDTHVHMYDAEGKS-LVTAMSGHASWVLSVDASPDGAAITTGSSDRTVKLWDLN  273 (315)
Q Consensus       217 ~s~~~d~~i~~wd~~~~~-~~~~~~~~~~~i~~~~~~~~~~~l~s~~~d~~i~iwd~~  273 (315)
                      ++++.|+++++||.+..+ .+..+.+|...|.++.|+. +..+++||.|.+|+|+.-.
T Consensus       362 ~S~S~D~t~klWDvRS~k~plydI~~h~DKvl~vdW~~-~~~IvSGGaD~~l~i~~~~  418 (423)
T KOG0313|consen  362 VSGSYDNTVKLWDVRSTKAPLYDIAGHNDKVLSVDWNE-GGLIVSGGADNKLRIFKGS  418 (423)
T ss_pred             EEEecCCeEEEEEeccCCCcceeeccCCceEEEEeccC-CceEEeccCcceEEEeccc
Confidence            999999999999999876 8899999999999999984 5689999999999998643

>KOG0289 consensus mRNA splicing factor [General function prediction only]

Probab=100.00  E-value=1.7e-33  Score=225.34  Aligned_cols=283  Identities=22%  Similarity=0.308  Sum_probs=245.3

Q ss_pred             cceEEEEEeecCCCCCcEEEEeeCCCcEEEEcCCCCcceeeccccccceEEEEeCCCCCEEEEeeCCCeEEEEECCCCce
Q 021247           15 ESVWAVTWVPATETRPALLLTGSLDETVKLWRPDDMQLERTNTGHCLGVVSVAAHPSGIIAASASLDSFVRVFDVDTNAS   94 (315)
Q Consensus        15 ~~v~~v~~~~~~~~~~~~l~sgs~d~~v~~w~~~~~~~~~~~~~h~~~v~~~~~~~~g~~l~s~~~d~~i~~w~~~~~~~   94 (315)
                      ..+.++.-.|..    +.++||+.|..+.++|....++...++||...|+.+.++|+...+++++.|..||+|......+
T Consensus       220 pgi~ald~~~s~----~~ilTGG~d~~av~~d~~s~q~l~~~~Gh~kki~~v~~~~~~~~v~~aSad~~i~vws~~~~s~  295 (506)
T KOG0289|consen  220 PGITALDIIPSS----SKILTGGEDKTAVLFDKPSNQILATLKGHTKKITSVKFHKDLDTVITASADEIIRVWSVPLSSE  295 (506)
T ss_pred             CCeeEEeecCCC----CcceecCCCCceEEEecchhhhhhhccCcceEEEEEEeccchhheeecCCcceEEeeccccccC
Confidence            356666655553    3699999999999999999999999999999999999999999999999999999999998888


Q ss_pred             eEEeeCCcccEEEEEECCCCCeEEEEecCCCeEEEEecCCcceeeeecCCCCCCCCCCccCCCCcceEEEEECCCCCEEE
Q 021247           95 IATLEASPSEVWQMQFDPKGTTLAVAGGGSASVKLWDTATWNLIATLSIPRPEGLKPTDKSSSKKFVLSVAWSPDGRRIA  174 (315)
Q Consensus        95 ~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~  174 (315)
                      ......|..+|..+..+|+|.|+ ++++.|++..+.|++++..+....-..           ..-.+++.+|+|||..|.
T Consensus       296 ~~~~~~h~~~V~~ls~h~tgeYl-lsAs~d~~w~Fsd~~~g~~lt~vs~~~-----------s~v~~ts~~fHpDgLifg  363 (506)
T KOG0289|consen  296 PTSSRPHEEPVTGLSLHPTGEYL-LSASNDGTWAFSDISSGSQLTVVSDET-----------SDVEYTSAAFHPDGLIFG  363 (506)
T ss_pred             ccccccccccceeeeeccCCcEE-EEecCCceEEEEEccCCcEEEEEeecc-----------ccceeEEeeEcCCceEEe
Confidence            88889999999999999999987 567899999999999988776553211           112378999999999999


Q ss_pred             EecCCCcEEEEEcccceeeeeecCCccceEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCeeEEEeec-ccccEEEEEEcC
Q 021247          175 CGSMDGTISVFDVTRAKFLHHLEGHFMPVRSLVYSPVDPRVLFSASDDTHVHMYDAEGKSLVTAMSG-HASWVLSVDASP  253 (315)
Q Consensus       175 ~~s~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~-~~~~i~~~~~~~  253 (315)
                      +|+.|+.+++||+........+.+|..+|..++|+. ++.+|+++.+|+.|++||++..+....+.- ....+.++.|++
T Consensus       364 tgt~d~~vkiwdlks~~~~a~Fpght~~vk~i~FsE-NGY~Lat~add~~V~lwDLRKl~n~kt~~l~~~~~v~s~~fD~  442 (506)
T KOG0289|consen  364 TGTPDGVVKIWDLKSQTNVAKFPGHTGPVKAISFSE-NGYWLATAADDGSVKLWDLRKLKNFKTIQLDEKKEVNSLSFDQ  442 (506)
T ss_pred             ccCCCceEEEEEcCCccccccCCCCCCceeEEEecc-CceEEEEEecCCeEEEEEehhhcccceeeccccccceeEEEcC
Confidence            999999999999998888899999999999999996 899999999999999999998766655543 234689999999


Q ss_pred             CCCeEEEEeCCCcEEEEecC--ccceehcccccccceEEEEEeeCCCEEEEEeCCCcEEEeec
Q 021247          254 DGAAITTGSSDRTVKLWDLN--MRAAMQSMTNHTDQVWGVSFRPLGGRVVSVSDDKSISLYEY  314 (315)
Q Consensus       254 ~~~~l~s~~~d~~i~iwd~~--~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~i~i~~~  314 (315)
                      .|.+|+.++.|=+|++++-.  .+..+.++..|.+..+.+.|.....+++++|.|..++|+.+
T Consensus       443 SGt~L~~~g~~l~Vy~~~k~~k~W~~~~~~~~~sg~st~v~Fg~~aq~l~s~smd~~l~~~a~  505 (506)
T KOG0289|consen  443 SGTYLGIAGSDLQVYICKKKTKSWTEIKELADHSGLSTGVRFGEHAQYLASTSMDAILRLYAL  505 (506)
T ss_pred             CCCeEEeecceeEEEEEecccccceeeehhhhcccccceeeecccceEEeeccchhheEEeec
Confidence            99999999888666666532  45677788889999999999999999999999999999875

>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=8.3e-34  Score=230.20  Aligned_cols=276  Identities=25%  Similarity=0.342  Sum_probs=231.9

Q ss_pred             cceEEEEEeecCCCCCcEEEEeeCCCcEEEEcCCCCcceeeccccccceEEEEeCCCCCEEEEeeCCCeEEEEECCCCce
Q 021247           15 ESVWAVTWVPATETRPALLLTGSLDETVKLWRPDDMQLERTNTGHCLGVVSVAAHPSGIIAASASLDSFVRVFDVDTNAS   94 (315)
Q Consensus        15 ~~v~~v~~~~~~~~~~~~l~sgs~d~~v~~w~~~~~~~~~~~~~h~~~v~~~~~~~~g~~l~s~~~d~~i~~w~~~~~~~   94 (315)
                      +.|..++|+|..+.  . ++++|. -.+.||+..+....+.+.--...+.++.|-.||.++++|+..|.|+++|.++...
T Consensus        27 ~~vssl~fsp~~P~--d-~aVt~S-~rvqly~~~~~~~~k~~srFk~~v~s~~fR~DG~LlaaGD~sG~V~vfD~k~r~i  102 (487)
T KOG0310|consen   27 NSVSSLCFSPKHPY--D-FAVTSS-VRVQLYSSVTRSVRKTFSRFKDVVYSVDFRSDGRLLAAGDESGHVKVFDMKSRVI  102 (487)
T ss_pred             CcceeEecCCCCCC--c-eEEecc-cEEEEEecchhhhhhhHHhhccceeEEEeecCCeEEEccCCcCcEEEeccccHHH
Confidence            68999999997764  2 444443 4789999888777776666778899999999999999999999999999666556


Q ss_pred             eEEeeCCcccEEEEEECCCCCeEEEEecCCCeEEEEecCCcceeeeecCCCCCCCCCCccCCCCcceEEEEECCC-CCEE
Q 021247           95 IATLEASPSEVWQMQFDPKGTTLAVAGGGSASVKLWDTATWNLIATLSIPRPEGLKPTDKSSSKKFVLSVAWSPD-GRRI  173 (315)
Q Consensus        95 ~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-~~~l  173 (315)
                      +..+..|..++..+.|+|+++.++++|++|+.+++||+.+......             ...|.++|++.+|+|. +..+
T Consensus       103 LR~~~ah~apv~~~~f~~~d~t~l~s~sDd~v~k~~d~s~a~v~~~-------------l~~htDYVR~g~~~~~~~hiv  169 (487)
T KOG0310|consen  103 LRQLYAHQAPVHVTKFSPQDNTMLVSGSDDKVVKYWDLSTAYVQAE-------------LSGHTDYVRCGDISPANDHIV  169 (487)
T ss_pred             HHHHhhccCceeEEEecccCCeEEEecCCCceEEEEEcCCcEEEEE-------------ecCCcceeEeeccccCCCeEE
Confidence            6788899999999999999999999999999999999988664222             2467889999999995 5588


Q ss_pred             EEecCCCcEEEEEcccc-eeeeeecCCccceEEEEEcCCCCcEEEEEeCCCeEEEEeCC-CCeeEEEeecccccEEEEEE
Q 021247          174 ACGSMDGTISVFDVTRA-KFLHHLEGHFMPVRSLVYSPVDPRVLFSASDDTHVHMYDAE-GKSLVTAMSGHASWVLSVDA  251 (315)
Q Consensus       174 ~~~s~dg~i~i~d~~~~-~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~-~~~~~~~~~~~~~~i~~~~~  251 (315)
                      ++|+.||.|++||++.. ..+..+ .|..+|..+.+-| .+.++++++.. .+++||+. +++.+..+..|...|+|+.+
T Consensus       170 vtGsYDg~vrl~DtR~~~~~v~el-nhg~pVe~vl~lp-sgs~iasAgGn-~vkVWDl~~G~qll~~~~~H~KtVTcL~l  246 (487)
T KOG0310|consen  170 VTGSYDGKVRLWDTRSLTSRVVEL-NHGCPVESVLALP-SGSLIASAGGN-SVKVWDLTTGGQLLTSMFNHNKTVTCLRL  246 (487)
T ss_pred             EecCCCceEEEEEeccCCceeEEe-cCCCceeeEEEcC-CCCEEEEcCCC-eEEEEEecCCceehhhhhcccceEEEEEe
Confidence            99999999999999876 334444 4788999999998 45677777654 79999988 56666666679999999999


Q ss_pred             cCCCCeEEEEeCCCcEEEEecCccceehcccccccceEEEEEeeCCCEEEEEeCCCcEEE
Q 021247          252 SPDGAAITTGSSDRTVKLWDLNMRAAMQSMTNHTDQVWGVSFRPLGGRVVSVSDDKSISL  311 (315)
Q Consensus       252 ~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~i~i  311 (315)
                      ..+++-|++|+-|+.|++||+...+.++.+. -.++|.+++.+|++..++.|..+|.+.+
T Consensus       247 ~s~~~rLlS~sLD~~VKVfd~t~~Kvv~s~~-~~~pvLsiavs~dd~t~viGmsnGlv~~  305 (487)
T KOG0310|consen  247 ASDSTRLLSGSLDRHVKVFDTTNYKVVHSWK-YPGPVLSIAVSPDDQTVVIGMSNGLVSI  305 (487)
T ss_pred             ecCCceEeecccccceEEEEccceEEEEeee-cccceeeEEecCCCceEEEecccceeee
Confidence            9999999999999999999988888887774 4579999999999999999999998754

>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]

Probab=100.00  E-value=9.7e-34  Score=231.35  Aligned_cols=291  Identities=21%  Similarity=0.257  Sum_probs=227.7

Q ss_pred             hhccccceEEEEEeecCCCCCcEEEEeeCCCcEEEEcCCCCcc----ee-eccccccceEEEEeCCCCCEEEEeeCCCeE
Q 021247           10 ENAHEESVWAVTWVPATETRPALLLTGSLDETVKLWRPDDMQL----ER-TNTGHCLGVVSVAAHPSGIIAASASLDSFV   84 (315)
Q Consensus        10 ~~~h~~~v~~v~~~~~~~~~~~~l~sgs~d~~v~~w~~~~~~~----~~-~~~~h~~~v~~~~~~~~g~~l~s~~~d~~i   84 (315)
                      +..|+..|.++++-|.+.    .|+|||.|.+|++||++.+..    .+ ..+.....|+++++++.|.+|++.+.....
T Consensus       163 l~hgtk~Vsal~~Dp~Ga----R~~sGs~Dy~v~~wDf~gMdas~~~fr~l~P~E~h~i~sl~ys~Tg~~iLvvsg~aqa  238 (641)
T KOG0772|consen  163 LKHGTKIVSALAVDPSGA----RFVSGSLDYTVKFWDFQGMDASMRSFRQLQPCETHQINSLQYSVTGDQILVVSGSAQA  238 (641)
T ss_pred             ccCCceEEEEeeecCCCc----eeeeccccceEEEEecccccccchhhhccCcccccccceeeecCCCCeEEEEecCcce
Confidence            568899999999999876    599999999999999875442    12 234455689999999999999999989999


Q ss_pred             EEEECCCCceeEEe------------eCCcccEEEEEECCCCCeEEEEecCCCeEEEEecCCcceeeeecCCCCCCCCCC
Q 021247           85 RVFDVDTNASIATL------------EASPSEVWQMQFDPKGTTLAVAGGGSASVKLWDTATWNLIATLSIPRPEGLKPT  152 (315)
Q Consensus        85 ~~w~~~~~~~~~~~------------~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~  152 (315)
                      +|+|-...+.....            ++|...+.+-+|+|..+..+++++.|+++++||+...+....+.-++..     
T Consensus       239 kl~DRdG~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~q~qVik~k~~-----  313 (641)
T KOG0772|consen  239 KLLDRDGFEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKSQLQVIKTKPA-----  313 (641)
T ss_pred             eEEccCCceeeeeeccchhhhhhhccCCceeeeeccccccCcccceEEecCCCcEEEEecCCchhheeEEeeccC-----
Confidence            99997655444333            4567788999999999988999999999999999865433222212221     


Q ss_pred             ccCCCCcceEEEEECCCCCEEEEecCCCcEEEEEccccee--e-eeecCCcc--ceEEEEEcCCCCcEEEEEeCCCeEEE
Q 021247          153 DKSSSKKFVLSVAWSPDGRRIACGSMDGTISVFDVTRAKF--L-HHLEGHFM--PVRSLVYSPVDPRVLFSASDDTHVHM  227 (315)
Q Consensus       153 ~~~~~~~~i~~~~~~~~~~~l~~~s~dg~i~i~d~~~~~~--~-~~~~~~~~--~v~~~~~~~~~~~~l~s~~~d~~i~~  227 (315)
                        .+.+-.+++|+|+++|++||+|..||.|.+||......  . ..-..|..  .|+++.|++ ++++|++-+.|.++++
T Consensus       314 --~g~Rv~~tsC~~nrdg~~iAagc~DGSIQ~W~~~~~~v~p~~~vk~AH~~g~~Itsi~FS~-dg~~LlSRg~D~tLKv  390 (641)
T KOG0772|consen  314 --GGKRVPVTSCAWNRDGKLIAAGCLDGSIQIWDKGSRTVRPVMKVKDAHLPGQDITSISFSY-DGNYLLSRGFDDTLKV  390 (641)
T ss_pred             --CCcccCceeeecCCCcchhhhcccCCceeeeecCCcccccceEeeeccCCCCceeEEEecc-ccchhhhccCCCceee
Confidence              22344588999999999999999999999999743322  1 12235665  899999998 7889999999999999


Q ss_pred             EeCCCCe-eEEEeecc--cccEEEEEEcCCCCeEEEEeC------CCcEEEEecCccceehcccccccceEEEEEeeCCC
Q 021247          228 YDAEGKS-LVTAMSGH--ASWVLSVDASPDGAAITTGSS------DRTVKLWDLNMRAAMQSMTNHTDQVWGVSFRPLGG  298 (315)
Q Consensus       228 wd~~~~~-~~~~~~~~--~~~i~~~~~~~~~~~l~s~~~------d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~  298 (315)
                      ||++..+ .+....+-  .-+-+.++|||+.+++++|..      .|.+.+||..+...+..+.-....|..+.|+|.-+
T Consensus       391 WDLrq~kkpL~~~tgL~t~~~~tdc~FSPd~kli~TGtS~~~~~~~g~L~f~d~~t~d~v~ki~i~~aSvv~~~WhpkLN  470 (641)
T KOG0772|consen  391 WDLRQFKKPLNVRTGLPTPFPGTDCCFSPDDKLILTGTSAPNGMTAGTLFFFDRMTLDTVYKIDISTASVVRCLWHPKLN  470 (641)
T ss_pred             eeccccccchhhhcCCCccCCCCccccCCCceEEEecccccCCCCCceEEEEeccceeeEEEecCCCceEEEEeecchhh
Confidence            9998643 33322221  223457899999999999864      56799999988888877776678899999999999


Q ss_pred             EEEEEeCCCcEEEe
Q 021247          299 RVVSVSDDKSISLY  312 (315)
Q Consensus       299 ~l~s~~~d~~i~i~  312 (315)
                      .|+.++.||++++|
T Consensus       471 Qi~~gsgdG~~~vy  484 (641)
T KOG0772|consen  471 QIFAGSGDGTAHVY  484 (641)
T ss_pred             heeeecCCCceEEE
Confidence            99999999999986

>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]

Probab=100.00  E-value=2.1e-33  Score=215.09  Aligned_cols=244  Identities=21%  Similarity=0.349  Sum_probs=205.8

Q ss_pred             eccccccceEEEEeCCCCCEEEEeeCCCeEEEEECCC-CceeEEeeCCcccEEEEEECCCCCeEEEEecCCCeEEEEecC
Q 021247           55 TNTGHCLGVVSVAAHPSGIIAASASLDSFVRVFDVDT-NASIATLEASPSEVWQMQFDPKGTTLAVAGGGSASVKLWDTA  133 (315)
Q Consensus        55 ~~~~h~~~v~~~~~~~~g~~l~s~~~d~~i~~w~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~~d~~  133 (315)
                      .+++|.+.|+.+.|+|+|..+++|+.|..|.+|++.. -+....+++|.++|..+.|.++++.+ ++++.|.+++.||.+
T Consensus        42 ~l~gh~geI~~~~F~P~gs~~aSgG~Dr~I~LWnv~gdceN~~~lkgHsgAVM~l~~~~d~s~i-~S~gtDk~v~~wD~~  120 (338)
T KOG0265|consen   42 LLPGHKGEIYTIKFHPDGSCFASGGSDRAIVLWNVYGDCENFWVLKGHSGAVMELHGMRDGSHI-LSCGTDKTVRGWDAE  120 (338)
T ss_pred             hcCCCcceEEEEEECCCCCeEeecCCcceEEEEeccccccceeeeccccceeEeeeeccCCCEE-EEecCCceEEEEecc
Confidence            4579999999999999999999999999999999654 34567888999999999999998865 678899999999999


Q ss_pred             CcceeeeecCCCCCCCCCCccCCCCcceEEEEECCCCC-EEEEecCCCcEEEEEcccceeeeeecCCccceEEEEEcCCC
Q 021247          134 TWNLIATLSIPRPEGLKPTDKSSSKKFVLSVAWSPDGR-RIACGSMDGTISVFDVTRAKFLHHLEGHFMPVRSLVYSPVD  212 (315)
Q Consensus       134 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~l~~~s~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~  212 (315)
                      +++.+.+...             |...++.+.-+.-|. ++.+++.|+++++||+++...++.+. ...+++++.|.. .
T Consensus       121 tG~~~rk~k~-------------h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~k~~~~t~~-~kyqltAv~f~d-~  185 (338)
T KOG0265|consen  121 TGKRIRKHKG-------------HTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRKKEAIKTFE-NKYQLTAVGFKD-T  185 (338)
T ss_pred             cceeeehhcc-------------ccceeeecCccccCCeEEEecCCCceEEEEeecccchhhccc-cceeEEEEEecc-c
Confidence            9888766543             445577776333344 45678999999999999777666553 346789999985 6


Q ss_pred             CcEEEEEeCCCeEEEEeCCCCeeEEEeecccccEEEEEEcCCCCeEEEEeCCCcEEEEecCccc----eehcccccc---
Q 021247          213 PRVLFSASDDTHVHMYDAEGKSLVTAMSGHASWVLSVDASPDGAAITTGSSDRTVKLWDLNMRA----AMQSMTNHT---  285 (315)
Q Consensus       213 ~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~----~~~~~~~~~---  285 (315)
                      +...++|+-|+.|++||++.......+.+|.+.|+.+..+|+|.++.+-+.|.++++||++...    .++.+.+|.   
T Consensus       186 s~qv~sggIdn~ikvWd~r~~d~~~~lsGh~DtIt~lsls~~gs~llsnsMd~tvrvwd~rp~~p~~R~v~if~g~~hnf  265 (338)
T KOG0265|consen  186 SDQVISGGIDNDIKVWDLRKNDGLYTLSGHADTITGLSLSRYGSFLLSNSMDNTVRVWDVRPFAPSQRCVKIFQGHIHNF  265 (338)
T ss_pred             ccceeeccccCceeeeccccCcceEEeecccCceeeEEeccCCCccccccccceEEEEEecccCCCCceEEEeecchhhh
Confidence            6788999999999999999999999999999999999999999999999999999999997543    345555543   


Q ss_pred             -cceEEEEEeeCCCEEEEEeCCCcEEEeec
Q 021247          286 -DQVWGVSFRPLGGRVVSVSDDKSISLYEY  314 (315)
Q Consensus       286 -~~v~~~~~s~~~~~l~s~~~d~~i~i~~~  314 (315)
                       .....++|||++.++-+++.|+.+++||.
T Consensus       266 eknlL~cswsp~~~~i~ags~dr~vyvwd~  295 (338)
T KOG0265|consen  266 EKNLLKCSWSPNGTKITAGSADRFVYVWDT  295 (338)
T ss_pred             hhhcceeeccCCCCccccccccceEEEeec
Confidence             34667899999999999999999999984

>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=6.2e-33  Score=239.62  Aligned_cols=256  Identities=21%  Similarity=0.310  Sum_probs=215.4

Q ss_pred             hccccceEEEEEeecCCCCCcEEEEeeCCCcEEEEcCCCCcceeeccccccceEEEEeCCCCCEEEEeeCCCeEEEEECC
Q 021247           11 NAHEESVWAVTWVPATETRPALLLTGSLDETVKLWRPDDMQLERTNTGHCLGVVSVAAHPSGIIAASASLDSFVRVFDVD   90 (315)
Q Consensus        11 ~~h~~~v~~v~~~~~~~~~~~~l~sgs~d~~v~~w~~~~~~~~~~~~~h~~~v~~~~~~~~g~~l~s~~~d~~i~~w~~~   90 (315)
                      ..|+++|-+|.|.|..+    +++||+.|..|++|++.+.++..++.||-+.|..+.||+.=..++|+|.|.+||+||..
T Consensus        48 deHdGpVRgv~FH~~qp----lFVSGGDDykIkVWnYk~rrclftL~GHlDYVRt~~FHheyPWIlSASDDQTIrIWNwq  123 (1202)
T KOG0292|consen   48 DEHDGPVRGVDFHPTQP----LFVSGGDDYKIKVWNYKTRRCLFTLLGHLDYVRTVFFHHEYPWILSASDDQTIRIWNWQ  123 (1202)
T ss_pred             hccCCccceeeecCCCC----eEEecCCccEEEEEecccceehhhhccccceeEEeeccCCCceEEEccCCCeEEEEecc
Confidence            47999999999999765    89999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCceeEEeeCCcccEEEEEECCCCCeEEEEecCCCeEEEEecCCcceeeeecC--C------CC-CCCC-------CCcc
Q 021247           91 TNASIATLEASPSEVWQMQFDPKGTTLAVAGGGSASVKLWDTATWNLIATLSI--P------RP-EGLK-------PTDK  154 (315)
Q Consensus        91 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~--~------~~-~~~~-------~~~~  154 (315)
                      +..++..+.+|..-|.+.+|+|... ++++++-|.+|++||+...+....-+.  +      .. ..+.       ..-.
T Consensus       124 sr~~iavltGHnHYVMcAqFhptED-lIVSaSLDQTVRVWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VL  202 (1202)
T KOG0292|consen  124 SRKCIAVLTGHNHYVMCAQFHPTED-LIVSASLDQTVRVWDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVL  202 (1202)
T ss_pred             CCceEEEEecCceEEEeeccCCccc-eEEEecccceEEEEeecchhccCCCCCCchhhhhccccchhhcCCcCeeeeeee
Confidence            9999999999999999999999866 568999999999999875332221111  0      00 0000       0112


Q ss_pred             CCCCcceEEEEECCCCCEEEEecCCCcEEEEEcccce--eeeeecCCccceEEEEEcCCCCcEEEEEeCCCeEEEEeCCC
Q 021247          155 SSSKKFVLSVAWSPDGRRIACGSMDGTISVFDVTRAK--FLHHLEGHFMPVRSLVYSPVDPRVLFSASDDTHVHMYDAEG  232 (315)
Q Consensus       155 ~~~~~~i~~~~~~~~~~~l~~~s~dg~i~i~d~~~~~--~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~  232 (315)
                      .+|...|+.++|+|.-..+++|+.|..|++|.+...+  .+.++++|...|.++.|+| ...+++|.+.|++|++||+..
T Consensus       203 EGHDRGVNwaAfhpTlpliVSG~DDRqVKlWrmnetKaWEvDtcrgH~nnVssvlfhp-~q~lIlSnsEDksirVwDm~k  281 (1202)
T KOG0292|consen  203 EGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNETKAWEVDTCRGHYNNVSSVLFHP-HQDLILSNSEDKSIRVWDMTK  281 (1202)
T ss_pred             cccccccceEEecCCcceEEecCCcceeeEEEeccccceeehhhhcccCCcceEEecC-ccceeEecCCCccEEEEeccc
Confidence            3567778999999999999999999999999986544  3567889999999999999 677999999999999999999


Q ss_pred             CeeEEEeecccccEEEEEEcCCCCeEEEEeCCCcEEEEecC
Q 021247          233 KSLVTAMSGHASWVLSVDASPDGAAITTGSSDRTVKLWDLN  273 (315)
Q Consensus       233 ~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~d~~i~iwd~~  273 (315)
                      ++.+..+.-..+..+.++.+|..+++++|. |+-+.+|.+.
T Consensus       282 Rt~v~tfrrendRFW~laahP~lNLfAAgH-DsGm~VFkle  321 (1202)
T KOG0292|consen  282 RTSVQTFRRENDRFWILAAHPELNLFAAGH-DSGMIVFKLE  321 (1202)
T ss_pred             ccceeeeeccCCeEEEEEecCCcceeeeec-CCceEEEEEc
Confidence            999998887788889999999988777655 4445566654

>KOG0282 consensus mRNA splicing factor [Function unknown]

Probab=100.00  E-value=1.1e-34  Score=234.91  Aligned_cols=248  Identities=19%  Similarity=0.369  Sum_probs=214.1

Q ss_pred             ceeeccccccceEEEEeCC-CCCEEEEeeCCCeEEEEECCC-CceeEEeeCCcccEEEEEECCCCCeEEEEecCCCeEEE
Q 021247           52 LERTNTGHCLGVVSVAAHP-SGIIAASASLDSFVRVFDVDT-NASIATLEASPSEVWQMQFDPKGTTLAVAGGGSASVKL  129 (315)
Q Consensus        52 ~~~~~~~h~~~v~~~~~~~-~g~~l~s~~~d~~i~~w~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~  129 (315)
                      +.....||+.+|.++.|.| .+.+|++++.|+.|+||++-. +.+++++.+|..+|..++|++.|..+ ++++-|+.+++
T Consensus       206 ~~~~~~gH~kgvsai~~fp~~~hLlLS~gmD~~vklW~vy~~~~~lrtf~gH~k~Vrd~~~s~~g~~f-LS~sfD~~lKl  284 (503)
T KOG0282|consen  206 LSHNLSGHTKGVSAIQWFPKKGHLLLSGGMDGLVKLWNVYDDRRCLRTFKGHRKPVRDASFNNCGTSF-LSASFDRFLKL  284 (503)
T ss_pred             heeeccCCccccchhhhccceeeEEEecCCCceEEEEEEecCcceehhhhcchhhhhhhhccccCCee-eeeecceeeee
Confidence            3456789999999999999 899999999999999999987 78899999999999999999999876 57889999999


Q ss_pred             EecCCcceeeeecCCCCCCCCCCccCCCCcceEEEEECCCC-CEEEEecCCCcEEEEEcccceeeeeecCCccceEEEEE
Q 021247          130 WDTATWNLIATLSIPRPEGLKPTDKSSSKKFVLSVAWSPDG-RRIACGSMDGTISVFDVTRAKFLHHLEGHFMPVRSLVY  208 (315)
Q Consensus       130 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~l~~~s~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~  208 (315)
                      ||+++++++..+.....              +.++.|+|++ +.|++|+.|+.|+.||+++++.++....|-+.|..+.|
T Consensus       285 wDtETG~~~~~f~~~~~--------------~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~kvvqeYd~hLg~i~~i~F  350 (503)
T KOG0282|consen  285 WDTETGQVLSRFHLDKV--------------PTCVKFHPDNQNIFLVGGSDKKIRQWDIRSGKVVQEYDRHLGAILDITF  350 (503)
T ss_pred             eccccceEEEEEecCCC--------------ceeeecCCCCCcEEEEecCCCcEEEEeccchHHHHHHHhhhhheeeeEE
Confidence            99999999988865433              6799999988 78999999999999999999999999999999999999


Q ss_pred             cCCCCcEEEEEeCCCeEEEEeCCCCeeEEEee-cccccEEEEEEcCCCCeEEEEeCCCcEEEEecCccc---eehccccc
Q 021247          209 SPVDPRVLFSASDDTHVHMYDAEGKSLVTAMS-GHASWVLSVDASPDGAAITTGSSDRTVKLWDLNMRA---AMQSMTNH  284 (315)
Q Consensus       209 ~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~-~~~~~i~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~---~~~~~~~~  284 (315)
                      .+ +++.+++.++|+.+++|+.+..-.++... .+.-...++..+|++.+++.-+.|+.|.+|.+...-   +.+.+.+|
T Consensus       351 ~~-~g~rFissSDdks~riWe~~~~v~ik~i~~~~~hsmP~~~~~P~~~~~~aQs~dN~i~ifs~~~~~r~nkkK~feGh  429 (503)
T KOG0282|consen  351 VD-EGRRFISSSDDKSVRIWENRIPVPIKNIADPEMHTMPCLTLHPNGKWFAAQSMDNYIAIFSTVPPFRLNKKKRFEGH  429 (503)
T ss_pred             cc-CCceEeeeccCccEEEEEcCCCccchhhcchhhccCcceecCCCCCeehhhccCceEEEEecccccccCHhhhhcce
Confidence            98 77899999999999999988765544332 223345678999999999999999999999875432   23456777


Q ss_pred             ccc--eEEEEEeeCCCEEEEEeCCCcEEEeecC
Q 021247          285 TDQ--VWGVSFRPLGGRVVSVSDDKSISLYEYS  315 (315)
Q Consensus       285 ~~~--v~~~~~s~~~~~l~s~~~d~~i~i~~~~  315 (315)
                      ..+  -..|.|||||.+|++|..||.+.+|||.
T Consensus       430 ~vaGys~~v~fSpDG~~l~SGdsdG~v~~wdwk  462 (503)
T KOG0282|consen  430 SVAGYSCQVDFSPDGRTLCSGDSDGKVNFWDWK  462 (503)
T ss_pred             eccCceeeEEEcCCCCeEEeecCCccEEEeech
Confidence            643  4578999999999999999999999983

>PTZ00420 coronin; Provisional

Probab=100.00  E-value=8.9e-32  Score=234.30  Aligned_cols=247  Identities=15%  Similarity=0.235  Sum_probs=192.4

Q ss_pred             EeeCCCcEEEEcCCCCcceeeccccccceEEEEeCCC-CCEEEEeeCCCeEEEEECCCCc--------eeEEeeCCcccE
Q 021247           35 TGSLDETVKLWRPDDMQLERTNTGHCLGVVSVAAHPS-GIIAASASLDSFVRVFDVDTNA--------SIATLEASPSEV  105 (315)
Q Consensus        35 sgs~d~~v~~w~~~~~~~~~~~~~h~~~v~~~~~~~~-g~~l~s~~~d~~i~~w~~~~~~--------~~~~~~~~~~~v  105 (315)
                      .|+.++.|++|+.........+.+|..+|.+++|+|+ +.+|++|+.|++|++||+.++.        .+..+..|...|
T Consensus        49 gGG~~gvI~L~~~~r~~~v~~L~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH~~~V  128 (568)
T PTZ00420         49 GGGLIGAIRLENQMRKPPVIKLKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGHKKKI  128 (568)
T ss_pred             CCCceeEEEeeecCCCceEEEEcCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccccccceEEeecCCCcE
Confidence            4667889999988766667778899999999999997 7899999999999999997642        234567888999


Q ss_pred             EEEEECCCCCeEEEEecCCCeEEEEecCCcceeeeecCCCCCCCCCCccCCCCcceEEEEECCCCCEEEEecCCCcEEEE
Q 021247          106 WQMQFDPKGTTLAVAGGGSASVKLWDTATWNLIATLSIPRPEGLKPTDKSSSKKFVLSVAWSPDGRRIACGSMDGTISVF  185 (315)
Q Consensus       106 ~~~~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~s~dg~i~i~  185 (315)
                      .+++|+|++..++++++.|++|++||+++++.+..+..              ...|.+++|+|+|.+|++++.|+.|++|
T Consensus       129 ~sVaf~P~g~~iLaSgS~DgtIrIWDl~tg~~~~~i~~--------------~~~V~SlswspdG~lLat~s~D~~IrIw  194 (568)
T PTZ00420        129 SIIDWNPMNYYIMCSSGFDSFVNIWDIENEKRAFQINM--------------PKKLSSLKWNIKGNLLSGTCVGKHMHII  194 (568)
T ss_pred             EEEEECCCCCeEEEEEeCCCeEEEEECCCCcEEEEEec--------------CCcEEEEEECCCCCEEEEEecCCEEEEE
Confidence            99999999988888889999999999998776554421              2348999999999999999999999999


Q ss_pred             EcccceeeeeecCCccceEEE-----EEcCCCCcEEEEEeCC----CeEEEEeCCC-CeeEEEe--ecccccEEEEEEcC
Q 021247          186 DVTRAKFLHHLEGHFMPVRSL-----VYSPVDPRVLFSASDD----THVHMYDAEG-KSLVTAM--SGHASWVLSVDASP  253 (315)
Q Consensus       186 d~~~~~~~~~~~~~~~~v~~~-----~~~~~~~~~l~s~~~d----~~i~~wd~~~-~~~~~~~--~~~~~~i~~~~~~~  253 (315)
                      |+++++.+..+.+|...+...     .|++ ++.++++++.|    +.|++||++. ...+...  ..+.+.+......+
T Consensus       195 D~Rsg~~i~tl~gH~g~~~s~~v~~~~fs~-d~~~IlTtG~d~~~~R~VkLWDlr~~~~pl~~~~ld~~~~~L~p~~D~~  273 (568)
T PTZ00420        195 DPRKQEIASSFHIHDGGKNTKNIWIDGLGG-DDNYILSTGFSKNNMREMKLWDLKNTTSALVTMSIDNASAPLIPHYDES  273 (568)
T ss_pred             ECCCCcEEEEEecccCCceeEEEEeeeEcC-CCCEEEEEEcCCCCccEEEEEECCCCCCceEEEEecCCccceEEeeeCC
Confidence            999999988898998765332     3445 55677777765    4799999985 4444433  23334343344455


Q ss_pred             CCCeEEEEeCCCcEEEEecCccce--ehcccccccceEEEEEeeCC
Q 021247          254 DGAAITTGSSDRTVKLWDLNMRAA--MQSMTNHTDQVWGVSFRPLG  297 (315)
Q Consensus       254 ~~~~l~s~~~d~~i~iwd~~~~~~--~~~~~~~~~~v~~~~~s~~~  297 (315)
                      ++.++++|+.|+.|++|++..+..  +..+. +..+..+++|.|..
T Consensus       274 tg~l~lsGkGD~tIr~~e~~~~~~~~l~~~~-s~~p~~g~~f~Pkr  318 (568)
T PTZ00420        274 TGLIYLIGKGDGNCRYYQHSLGSIRKVNEYK-SCSPFRSFGFLPKQ  318 (568)
T ss_pred             CCCEEEEEECCCeEEEEEccCCcEEeecccc-cCCCccceEEcccc
Confidence            688999999999999999976542  22222 45678899999963

>KOG0645 consensus WD40 repeat protein [General function prediction only]

Probab=100.00  E-value=1.4e-31  Score=202.46  Aligned_cols=241  Identities=27%  Similarity=0.452  Sum_probs=201.1

Q ss_pred             eeeccccccceEEEEeCCC-CCEEEEeeCCCeEEEEECCCCc---eeEEe-eCCcccEEEEEECCCCCeEEEEecCCCeE
Q 021247           53 ERTNTGHCLGVVSVAAHPS-GIIAASASLDSFVRVFDVDTNA---SIATL-EASPSEVWQMQFDPKGTTLAVAGGGSASV  127 (315)
Q Consensus        53 ~~~~~~h~~~v~~~~~~~~-g~~l~s~~~d~~i~~w~~~~~~---~~~~~-~~~~~~v~~~~~~~~~~~~~~~~~~d~~i  127 (315)
                      .+.+.+|.+.+..++++|- |.+|++++.|+.||+|+...+.   +...+ +.|...|..++|+|.|++ +++++.|.++
T Consensus         7 ~~~~~gh~~r~W~~awhp~~g~ilAscg~Dk~vriw~~~~~~s~~ck~vld~~hkrsVRsvAwsp~g~~-La~aSFD~t~   85 (312)
T KOG0645|consen    7 EQKLSGHKDRVWSVAWHPGKGVILASCGTDKAVRIWSTSSGDSWTCKTVLDDGHKRSVRSVAWSPHGRY-LASASFDATV   85 (312)
T ss_pred             EEeecCCCCcEEEEEeccCCceEEEeecCCceEEEEecCCCCcEEEEEeccccchheeeeeeecCCCcE-EEEeeccceE
Confidence            4567889999999999998 8999999999999999998533   33333 467889999999999995 5788999999


Q ss_pred             EEEecCCcc--eeeeecCCCCCCCCCCccCCCCcceEEEEECCCCCEEEEecCCCcEEEEEcccc---eeeeeecCCccc
Q 021247          128 KLWDTATWN--LIATLSIPRPEGLKPTDKSSSKKFVLSVAWSPDGRRIACGSMDGTISVFDVTRA---KFLHHLEGHFMP  202 (315)
Q Consensus       128 ~~~d~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~s~dg~i~i~d~~~~---~~~~~~~~~~~~  202 (315)
                      .||.-..++  ++.++.             +|...|.+++|+++|++||+++.|..|.+|.+...   .+...+..|...
T Consensus        86 ~Iw~k~~~efecv~~lE-------------GHEnEVK~Vaws~sG~~LATCSRDKSVWiWe~deddEfec~aVL~~HtqD  152 (312)
T KOG0645|consen   86 VIWKKEDGEFECVATLE-------------GHENEVKCVAWSASGNYLATCSRDKSVWIWEIDEDDEFECIAVLQEHTQD  152 (312)
T ss_pred             EEeecCCCceeEEeeee-------------ccccceeEEEEcCCCCEEEEeeCCCeEEEEEecCCCcEEEEeeecccccc
Confidence            999866443  333332             34556999999999999999999999999998643   346678899999


Q ss_pred             eEEEEEcCCCCcEEEEEeCCCeEEEEeCC---CCeeEEEeecccccEEEEEEcCCCCeEEEEeCCCcEEEEecCccceeh
Q 021247          203 VRSLVYSPVDPRVLFSASDDTHVHMYDAE---GKSLVTAMSGHASWVLSVDASPDGAAITTGSSDRTVKLWDLNMRAAMQ  279 (315)
Q Consensus       203 v~~~~~~~~~~~~l~s~~~d~~i~~wd~~---~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~  279 (315)
                      |..+.|+|. ..+|++++-|.+|++|+-.   .-.+++.+.+|...+++++|+|.|..|++++.|++|+||.+.+.  + 
T Consensus       153 VK~V~WHPt-~dlL~S~SYDnTIk~~~~~~dddW~c~~tl~g~~~TVW~~~F~~~G~rl~s~sdD~tv~Iw~~~~~--~-  228 (312)
T KOG0645|consen  153 VKHVIWHPT-EDLLFSCSYDNTIKVYRDEDDDDWECVQTLDGHENTVWSLAFDNIGSRLVSCSDDGTVSIWRLYTD--L-  228 (312)
T ss_pred             ccEEEEcCC-cceeEEeccCCeEEEEeecCCCCeeEEEEecCccceEEEEEecCCCceEEEecCCcceEeeeeccC--c-
Confidence            999999995 5699999999999999865   33678899999999999999999999999999999999986522  1 


Q ss_pred             cccccccceEEEEEeeCCCEEEEEeCCCcEEEeec
Q 021247          280 SMTNHTDQVWGVSFRPLGGRVVSVSDDKSISLYEY  314 (315)
Q Consensus       280 ~~~~~~~~v~~~~~s~~~~~l~s~~~d~~i~i~~~  314 (315)
                       -..|+.++..+.|.  ...|++++.|+.|+||.-
T Consensus       229 -~~~~sr~~Y~v~W~--~~~IaS~ggD~~i~lf~~  260 (312)
T KOG0645|consen  229 -SGMHSRALYDVPWD--NGVIASGGGDDAIRLFKE  260 (312)
T ss_pred             -chhcccceEeeeec--ccceEeccCCCEEEEEEe
Confidence             12477899999998  457999999999999964

>KOG0283 consensus WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=1.3e-32  Score=236.96  Aligned_cols=239  Identities=20%  Similarity=0.369  Sum_probs=196.0

Q ss_pred             ccccceEEEEeCCCCCEEEEeeCCCeEEEEECCC--------------------------------C-------------
Q 021247           58 GHCLGVVSVAAHPSGIIAASASLDSFVRVFDVDT--------------------------------N-------------   92 (315)
Q Consensus        58 ~h~~~v~~~~~~~~g~~l~s~~~d~~i~~w~~~~--------------------------------~-------------   92 (315)
                      .|.++|.++.|++||++||+||.|+.||||.+..                                .             
T Consensus       265 ah~gaIw~mKFS~DGKyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~s~~~~~~~  344 (712)
T KOG0283|consen  265 AHKGAIWAMKFSHDGKYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRTSSSRKGSQ  344 (712)
T ss_pred             ccCCcEEEEEeCCCCceeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCccccccccccccccccccccC
Confidence            7999999999999999999999999999998865                                0             


Q ss_pred             ---------------ceeEEeeCCcccEEEEEECCCCCeEEEEecCCCeEEEEecCCcceeeeecCCCCCCCCCCccCCC
Q 021247           93 ---------------ASIATLEASPSEVWQMQFDPKGTTLAVAGGGSASVKLWDTATWNLIATLSIPRPEGLKPTDKSSS  157 (315)
Q Consensus        93 ---------------~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~  157 (315)
                                     +++..+.+|.+.|..+.|+.+  +++++++.|.+|+||++...++++.+              .|
T Consensus       345 s~~~~~p~~~f~f~ekP~~ef~GHt~DILDlSWSKn--~fLLSSSMDKTVRLWh~~~~~CL~~F--------------~H  408 (712)
T KOG0283|consen  345 SPCVLLPLKAFVFSEKPFCEFKGHTADILDLSWSKN--NFLLSSSMDKTVRLWHPGRKECLKVF--------------SH  408 (712)
T ss_pred             CccccCCCccccccccchhhhhccchhheecccccC--CeeEeccccccEEeecCCCcceeeEE--------------ec
Confidence                           011223457778999999865  46778999999999999988888766              47


Q ss_pred             CcceEEEEECC-CCCEEEEecCCCcEEEEEcccceeeeeecCCccceEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCeeE
Q 021247          158 KKFVLSVAWSP-DGRRIACGSMDGTISVFDVTRAKFLHHLEGHFMPVRSLVYSPVDPRVLFSASDDTHVHMYDAEGKSLV  236 (315)
Q Consensus       158 ~~~i~~~~~~~-~~~~l~~~s~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~  236 (315)
                      .++|+|++|+| |.++|++|+.||.++||++...+...-.. -..-|++++|.| +++..+.|+-+|.+++|+..+.++.
T Consensus       409 ndfVTcVaFnPvDDryFiSGSLD~KvRiWsI~d~~Vv~W~D-l~~lITAvcy~P-dGk~avIGt~~G~C~fY~t~~lk~~  486 (712)
T KOG0283|consen  409 NDFVTCVAFNPVDDRYFISGSLDGKVRLWSISDKKVVDWND-LRDLITAVCYSP-DGKGAVIGTFNGYCRFYDTEGLKLV  486 (712)
T ss_pred             CCeeEEEEecccCCCcEeecccccceEEeecCcCeeEeehh-hhhhheeEEecc-CCceEEEEEeccEEEEEEccCCeEE
Confidence            88899999999 78899999999999999998766543333 336899999999 5889999999999999999887665


Q ss_pred             EEee--cc------cccEEEEEEcCCCC-eEEEEeCCCcEEEEecCccceehccccccc--ceEEEEEeeCCCEEEEEeC
Q 021247          237 TAMS--GH------ASWVLSVDASPDGA-AITTGSSDRTVKLWDLNMRAAMQSMTNHTD--QVWGVSFRPLGGRVVSVSD  305 (315)
Q Consensus       237 ~~~~--~~------~~~i~~~~~~~~~~-~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~--~v~~~~~s~~~~~l~s~~~  305 (315)
                      ....  .|      ...|+++.|.|... .|++.+.|..|||+|++...++..+.++..  .=....|+.||++|+++++
T Consensus       487 ~~~~I~~~~~Kk~~~~rITG~Q~~p~~~~~vLVTSnDSrIRI~d~~~~~lv~KfKG~~n~~SQ~~Asfs~Dgk~IVs~se  566 (712)
T KOG0283|consen  487 SDFHIRLHNKKKKQGKRITGLQFFPGDPDEVLVTSNDSRIRIYDGRDKDLVHKFKGFRNTSSQISASFSSDGKHIVSASE  566 (712)
T ss_pred             EeeeEeeccCccccCceeeeeEecCCCCCeEEEecCCCceEEEeccchhhhhhhcccccCCcceeeeEccCCCEEEEeec
Confidence            4332  11      23799999998543 467778999999999988888777765432  2346889999999999999


Q ss_pred             CCcEEEeec
Q 021247          306 DKSISLYEY  314 (315)
Q Consensus       306 d~~i~i~~~  314 (315)
                      |..|+||++
T Consensus       567 Ds~VYiW~~  575 (712)
T KOG0283|consen  567 DSWVYIWKN  575 (712)
T ss_pred             CceEEEEeC
Confidence            999999996

>PTZ00421 coronin; Provisional

Probab=100.00  E-value=1.6e-31  Score=231.52  Aligned_cols=267  Identities=14%  Similarity=0.212  Sum_probs=201.2

Q ss_pred             ccccceEEEEEeecCCCCCcEEEEeeCCCcEEEEcCCCC----------cce---eeccccccceEEEEeCC-CCCEEEE
Q 021247           12 AHEESVWAVTWVPATETRPALLLTGSLDETVKLWRPDDM----------QLE---RTNTGHCLGVVSVAAHP-SGIIAAS   77 (315)
Q Consensus        12 ~h~~~v~~v~~~~~~~~~~~~l~sgs~d~~v~~w~~~~~----------~~~---~~~~~h~~~v~~~~~~~-~g~~l~s   77 (315)
                      .|-..|.....+++..    .+++++.+.....|+....          +..   ..+.+|.++|.+++|+| ++.+|++
T Consensus        18 ~~~~~i~~~~~~~d~~----~~~~~n~~~~a~~w~~~gg~~v~~~~~~G~~~~~~~~l~GH~~~V~~v~fsP~d~~~LaS   93 (493)
T PTZ00421         18 RHFLNVTPSTALWDCS----NTIACNDRFIAVPWQQLGSTAVLKHTDYGKLASNPPILLGQEGPIIDVAFNPFDPQKLFT   93 (493)
T ss_pred             cceeccccccccCCCC----CcEeECCceEEEEEecCCceEEeeccccccCCCCCceEeCCCCCEEEEEEcCCCCCEEEE
Confidence            3445666565555432    3677777777777764322          111   13568999999999999 7899999


Q ss_pred             eeCCCeEEEEECCCC-------ceeEEeeCCcccEEEEEECCCCCeEEEEecCCCeEEEEecCCcceeeeecCCCCCCCC
Q 021247           78 ASLDSFVRVFDVDTN-------ASIATLEASPSEVWQMQFDPKGTTLAVAGGGSASVKLWDTATWNLIATLSIPRPEGLK  150 (315)
Q Consensus        78 ~~~d~~i~~w~~~~~-------~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~  150 (315)
                      ++.|++|++||+.++       ..+..+..|...|.+++|+|.+..++++++.|++|++||+++++.+..+.        
T Consensus        94 gS~DgtIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~DgtVrIWDl~tg~~~~~l~--------  165 (493)
T PTZ00421         94 ASEDGTIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMNVLASAGADMVVNVWDVERGKAVEVIK--------  165 (493)
T ss_pred             EeCCCEEEEEecCCCccccccCcceEEecCCCCcEEEEEeCcCCCCEEEEEeCCCEEEEEECCCCeEEEEEc--------
Confidence            999999999999765       24567888999999999999876677889999999999999877665542        


Q ss_pred             CCccCCCCcceEEEEECCCCCEEEEecCCCcEEEEEcccceeeeeecCCccc-eEEEEEcCCCCcEEEEEe----CCCeE
Q 021247          151 PTDKSSSKKFVLSVAWSPDGRRIACGSMDGTISVFDVTRAKFLHHLEGHFMP-VRSLVYSPVDPRVLFSAS----DDTHV  225 (315)
Q Consensus       151 ~~~~~~~~~~i~~~~~~~~~~~l~~~s~dg~i~i~d~~~~~~~~~~~~~~~~-v~~~~~~~~~~~~l~s~~----~d~~i  225 (315)
                           .|...|.+++|+|++++|++++.|+.|++||+++++.+..+.+|... +..+.|.+.+. .+++++    .|+.|
T Consensus       166 -----~h~~~V~sla~spdG~lLatgs~Dg~IrIwD~rsg~~v~tl~~H~~~~~~~~~w~~~~~-~ivt~G~s~s~Dr~V  239 (493)
T PTZ00421        166 -----CHSDQITSLEWNLDGSLLCTTSKDKKLNIIDPRDGTIVSSVEAHASAKSQRCLWAKRKD-LIITLGCSKSQQRQI  239 (493)
T ss_pred             -----CCCCceEEEEEECCCCEEEEecCCCEEEEEECCCCcEEEEEecCCCCcceEEEEcCCCC-eEEEEecCCCCCCeE
Confidence                 24456999999999999999999999999999999988888888754 34667887544 455443    47999


Q ss_pred             EEEeCCCCe-eEEEeec-ccccEEEEEEcCCCCeEEEEe-CCCcEEEEecCccceehcccc-cccceEEEEEeeC
Q 021247          226 HMYDAEGKS-LVTAMSG-HASWVLSVDASPDGAAITTGS-SDRTVKLWDLNMRAAMQSMTN-HTDQVWGVSFRPL  296 (315)
Q Consensus       226 ~~wd~~~~~-~~~~~~~-~~~~i~~~~~~~~~~~l~s~~-~d~~i~iwd~~~~~~~~~~~~-~~~~v~~~~~s~~  296 (315)
                      ++||++... .+..... +...+....|++++.+|++++ .|+.|++||+..++....... +.++..+++|.|.
T Consensus       240 klWDlr~~~~p~~~~~~d~~~~~~~~~~d~d~~~L~lggkgDg~Iriwdl~~~~~~~~~~~~s~~~~~g~~~~pk  314 (493)
T PTZ00421        240 MLWDTRKMASPYSTVDLDQSSALFIPFFDEDTNLLYIGSKGEGNIRCFELMNERLTFCSSYSSVEPHKGLCMMPK  314 (493)
T ss_pred             EEEeCCCCCCceeEeccCCCCceEEEEEcCCCCEEEEEEeCCCeEEEEEeeCCceEEEeeccCCCCCcceEeccc
Confidence            999998643 3333322 334566677899999998887 499999999998876654433 3456778888875

>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]

Probab=100.00  E-value=5.8e-32  Score=212.25  Aligned_cols=256  Identities=22%  Similarity=0.299  Sum_probs=213.9

Q ss_pred             hhccccceEEEEEeecCCCCCcEEEEeeCCCcEEEEcCCCCcceeeccccccceEEEEeCCCCCEEEEeeCCCeEEEEEC
Q 021247           10 ENAHEESVWAVTWVPATETRPALLLTGSLDETVKLWRPDDMQLERTNTGHCLGVVSVAAHPSGIIAASASLDSFVRVFDV   89 (315)
Q Consensus        10 ~~~h~~~v~~v~~~~~~~~~~~~l~sgs~d~~v~~w~~~~~~~~~~~~~h~~~v~~~~~~~~g~~l~s~~~d~~i~~w~~   89 (315)
                      +.+|.+.|+++.|+.++.    +||||..+|.|++|...++.....+.+....+.-+.|||.+.+|++|+.||.+.+|.+
T Consensus       102 ltgHKDSVt~~~Fshdgt----lLATGdmsG~v~v~~~stg~~~~~~~~e~~dieWl~WHp~a~illAG~~DGsvWmw~i  177 (399)
T KOG0296|consen  102 LTGHKDSVTCCSFSHDGT----LLATGDMSGKVLVFKVSTGGEQWKLDQEVEDIEWLKWHPRAHILLAGSTDGSVWMWQI  177 (399)
T ss_pred             ecCCCCceEEEEEccCce----EEEecCCCccEEEEEcccCceEEEeecccCceEEEEecccccEEEeecCCCcEEEEEC
Confidence            469999999999998875    8999999999999999998888877767778999999999999999999999999999


Q ss_pred             CCCceeEEeeCCcccEEEEEECCCCCeEEEEecCCCeEEEEecCCcceeeeecCCCCCCC--------------------
Q 021247           90 DTNASIATLEASPSEVWQMQFDPKGTTLAVAGGGSASVKLWDTATWNLIATLSIPRPEGL--------------------  149 (315)
Q Consensus        90 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~--------------------  149 (315)
                      .++...+.+.+|..++.+=.|.|+|+.+ +++..|++|++||..++.++..+........                    
T Consensus       178 p~~~~~kv~~Gh~~~ct~G~f~pdGKr~-~tgy~dgti~~Wn~ktg~p~~~~~~~e~~~~~~~~~~~~~~~~~~g~~e~~  256 (399)
T KOG0296|consen  178 PSQALCKVMSGHNSPCTCGEFIPDGKRI-LTGYDDGTIIVWNPKTGQPLHKITQAEGLELPCISLNLAGSTLTKGNSEGV  256 (399)
T ss_pred             CCcceeeEecCCCCCcccccccCCCceE-EEEecCceEEEEecCCCceeEEecccccCcCCccccccccceeEeccCCcc
Confidence            9987788889999999999999999876 5788899999999999988877762211000                    


Q ss_pred             ------------------CCCccCCCCcceEE---EEECCCCCEEEEecCCCcEEEEEcccceeeeeecCCccceEEEEE
Q 021247          150 ------------------KPTDKSSSKKFVLS---VAWSPDGRRIACGSMDGTISVFDVTRAKFLHHLEGHFMPVRSLVY  208 (315)
Q Consensus       150 ------------------~~~~~~~~~~~i~~---~~~~~~~~~l~~~s~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~  208 (315)
                                        .+..+..+...+.+   +.++..-.+.|+|+.||+|.|||+...++...+ .|..+|..+.|
T Consensus       257 ~~~~~~~sgKVv~~~n~~~~~l~~~~e~~~esve~~~~ss~lpL~A~G~vdG~i~iyD~a~~~~R~~c-~he~~V~~l~w  335 (399)
T KOG0296|consen  257 ACGVNNGSGKVVNCNNGTVPELKPSQEELDESVESIPSSSKLPLAACGSVDGTIAIYDLAASTLRHIC-EHEDGVTKLKW  335 (399)
T ss_pred             EEEEccccceEEEecCCCCccccccchhhhhhhhhcccccccchhhcccccceEEEEecccchhheec-cCCCceEEEEE
Confidence                              00001111222223   344445567899999999999999876655544 47788999999


Q ss_pred             cCCCCcEEEEEeCCCeEEEEeCCCCeeEEEeecccccEEEEEEcCCCCeEEEEeCCCcEEEEecC
Q 021247          209 SPVDPRVLFSASDDTHVHMYDAEGKSLVTAMSGHASWVLSVDASPDGAAITTGSSDRTVKLWDLN  273 (315)
Q Consensus       209 ~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~d~~i~iwd~~  273 (315)
                      -+  ..+|++++.+|.|+.||.++++++..+.+|...|.+++++|+.++++|++.|++.+||+..
T Consensus       336 ~~--t~~l~t~c~~g~v~~wDaRtG~l~~~y~GH~~~Il~f~ls~~~~~vvT~s~D~~a~VF~v~  398 (399)
T KOG0296|consen  336 LN--TDYLLTACANGKVRQWDARTGQLKFTYTGHQMGILDFALSPQKRLVVTVSDDNTALVFEVP  398 (399)
T ss_pred             cC--cchheeeccCceEEeeeccccceEEEEecCchheeEEEEcCCCcEEEEecCCCeEEEEecC
Confidence            87  5689999999999999999999999999999999999999999999999999999999864

>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]

Probab=100.00  E-value=1.6e-31  Score=205.52  Aligned_cols=272  Identities=19%  Similarity=0.281  Sum_probs=213.2

Q ss_pred             hhhccccceEEEEEeecCCCCCcEEEEeeCCCcEEEEcCCCCcceeeccccccceEEEEeCCCCCEEEEeeCCCeEEEEE
Q 021247            9 VENAHEESVWAVTWVPATETRPALLLTGSLDETVKLWRPDDMQLERTNTGHCLGVVSVAAHPSGIIAASASLDSFVRVFD   88 (315)
Q Consensus         9 ~~~~h~~~v~~v~~~~~~~~~~~~l~sgs~d~~v~~w~~~~~~~~~~~~~h~~~v~~~~~~~~g~~l~s~~~d~~i~~w~   88 (315)
                      +.....+.|..|.|+|...    .|+.+|+||++++|+.....+... -.|..++++++|.+ ...+++|+.||.|+.+|
T Consensus         8 l~npP~d~IS~v~f~~~~~----~LLvssWDgslrlYdv~~~~l~~~-~~~~~plL~c~F~d-~~~~~~G~~dg~vr~~D   81 (323)
T KOG1036|consen    8 LENPPEDGISSVKFSPSSS----DLLVSSWDGSLRLYDVPANSLKLK-FKHGAPLLDCAFAD-ESTIVTGGLDGQVRRYD   81 (323)
T ss_pred             cCCCChhceeeEEEcCcCC----cEEEEeccCcEEEEeccchhhhhh-eecCCceeeeeccC-CceEEEeccCceEEEEE
Confidence            3456688999999997655    488888999999999887754333 35889999999988 45778899999999999


Q ss_pred             CCCCceeEEeeCCcccEEEEEECCCCCeEEEEecCCCeEEEEecCCcceeeeecCCCCCCCCCCccCCCCcceEEEEECC
Q 021247           89 VDTNASIATLEASPSEVWQMQFDPKGTTLAVAGGGSASVKLWDTATWNLIATLSIPRPEGLKPTDKSSSKKFVLSVAWSP  168 (315)
Q Consensus        89 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~  168 (315)
                      ++++... .+..|..++.++.+.+..+. +++|++|++|++||.+.......+..              ...|.++..  
T Consensus        82 ln~~~~~-~igth~~~i~ci~~~~~~~~-vIsgsWD~~ik~wD~R~~~~~~~~d~--------------~kkVy~~~v--  143 (323)
T KOG1036|consen   82 LNTGNED-QIGTHDEGIRCIEYSYEVGC-VISGSWDKTIKFWDPRNKVVVGTFDQ--------------GKKVYCMDV--  143 (323)
T ss_pred             ecCCcce-eeccCCCceEEEEeeccCCe-EEEcccCccEEEEecccccccccccc--------------CceEEEEec--
Confidence            9987653 45668899999999976664 57899999999999986332222211              113666655  


Q ss_pred             CCCEEEEecCCCcEEEEEcccceeeeeec--CCccceEEEEEcCCCCcEEEEEeCCCeEEEEeCCCC----eeEEEeecc
Q 021247          169 DGRRIACGSMDGTISVFDVTRAKFLHHLE--GHFMPVRSLVYSPVDPRVLFSASDDTHVHMYDAEGK----SLVTAMSGH  242 (315)
Q Consensus       169 ~~~~l~~~s~dg~i~i~d~~~~~~~~~~~--~~~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~----~~~~~~~~~  242 (315)
                      .++.|++|+.+..+.+||+++.......+  .-+..++++++.| +..-++.++-||.+.+=.....    +....+..|
T Consensus       144 ~g~~LvVg~~~r~v~iyDLRn~~~~~q~reS~lkyqtR~v~~~p-n~eGy~~sSieGRVavE~~d~s~~~~skkyaFkCH  222 (323)
T KOG1036|consen  144 SGNRLVVGTSDRKVLIYDLRNLDEPFQRRESSLKYQTRCVALVP-NGEGYVVSSIEGRVAVEYFDDSEEAQSKKYAFKCH  222 (323)
T ss_pred             cCCEEEEeecCceEEEEEcccccchhhhccccceeEEEEEEEec-CCCceEEEeecceEEEEccCCchHHhhhceeEEee
Confidence            47899999999999999999876544322  2356789999999 6667888899999887544433    223334444


Q ss_pred             c---------ccEEEEEEcCCCCeEEEEeCCCcEEEEecCccceehcccccccceEEEEEeeCCCEEEEEeC
Q 021247          243 A---------SWVLSVDASPDGAAITTGSSDRTVKLWDLNMRAAMQSMTNHTDQVWGVSFRPLGGRVVSVSD  305 (315)
Q Consensus       243 ~---------~~i~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~  305 (315)
                      .         -+|++++|+|-...|+||+.||.|.+||+..++.+.++......|-+++|+.+|..||.++.
T Consensus       223 r~~~~~~~~~yPVNai~Fhp~~~tfaTgGsDG~V~~Wd~~~rKrl~q~~~~~~SI~slsfs~dG~~LAia~s  294 (323)
T KOG1036|consen  223 RLSEKDTEIIYPVNAIAFHPIHGTFATGGSDGIVNIWDLFNRKRLKQLAKYETSISSLSFSMDGSLLAIASS  294 (323)
T ss_pred             ecccCCceEEEEeceeEeccccceEEecCCCceEEEccCcchhhhhhccCCCCceEEEEeccCCCeEEEEec
Confidence            2         36899999999889999999999999999999999998887788999999999999998765

>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]

Probab=100.00  E-value=1.2e-32  Score=212.19  Aligned_cols=288  Identities=19%  Similarity=0.307  Sum_probs=229.9

Q ss_pred             hhccccceEEEEEeecCCCCCcEEEEeeCCCcEEEEcCCC------------------CcceeeccccccceEEEEeCCC
Q 021247           10 ENAHEESVWAVTWVPATETRPALLLTGSLDETVKLWRPDD------------------MQLERTNTGHCLGVVSVAAHPS   71 (315)
Q Consensus        10 ~~~h~~~v~~v~~~~~~~~~~~~l~sgs~d~~v~~w~~~~------------------~~~~~~~~~h~~~v~~~~~~~~   71 (315)
                      +..|..++-+-+|+|++.    +++|||.|-+|+|.|.+.                  ..+++.+..|.++|+.+.|+|.
T Consensus       108 lt~HK~~cR~aafs~DG~----lvATGsaD~SIKildvermlaks~~~em~~~~~qa~hPvIRTlYDH~devn~l~FHPr  183 (430)
T KOG0640|consen  108 LTSHKSPCRAAAFSPDGS----LVATGSADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYDHVDEVNDLDFHPR  183 (430)
T ss_pred             EeecccceeeeeeCCCCc----EEEccCCcceEEEeehhhhhhhcchhhhccCCcccCCceEeehhhccCcccceeecch
Confidence            467899999999999885    899999999999998641                  1235667789999999999999


Q ss_pred             CCEEEEeeCCCeEEEEECCCCceeEEe--eCCcccEEEEEECCCCCeEEEEecCCCeEEEEecCCcceeeeecCCCCCCC
Q 021247           72 GIIAASASLDSFVRVFDVDTNASIATL--EASPSEVWQMQFDPKGTTLAVAGGGSASVKLWDTATWNLIATLSIPRPEGL  149 (315)
Q Consensus        72 g~~l~s~~~d~~i~~w~~~~~~~~~~~--~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~  149 (315)
                      ..+|++++.|++|+++|+......+.+  .....+|.++.|+|.|.+++ .|.+-.++++||+.+.++....+       
T Consensus       184 e~ILiS~srD~tvKlFDfsK~saKrA~K~~qd~~~vrsiSfHPsGefll-vgTdHp~~rlYdv~T~Qcfvsan-------  255 (430)
T KOG0640|consen  184 ETILISGSRDNTVKLFDFSKTSAKRAFKVFQDTEPVRSISFHPSGEFLL-VGTDHPTLRLYDVNTYQCFVSAN-------  255 (430)
T ss_pred             hheEEeccCCCeEEEEecccHHHHHHHHHhhccceeeeEeecCCCceEE-EecCCCceeEEeccceeEeeecC-------
Confidence            999999999999999999765433222  22346799999999999764 57788899999999877665443       


Q ss_pred             CCCccCCCCcceEEEEECCCCCEEEEecCCCcEEEEEcccceeeeeec-CC-ccceEEEEEcCCCCcEEEEEeCCCeEEE
Q 021247          150 KPTDKSSSKKFVLSVAWSPDGRRIACGSMDGTISVFDVTRAKFLHHLE-GH-FMPVRSLVYSPVDPRVLFSASDDTHVHM  227 (315)
Q Consensus       150 ~~~~~~~~~~~i~~~~~~~~~~~l~~~s~dg~i~i~d~~~~~~~~~~~-~~-~~~v~~~~~~~~~~~~l~s~~~d~~i~~  227 (315)
                         ...+|...|+++.+++.++..++++.||.|++||--.++++..+. .| ...|.+..|.. +++++++++.|..+++
T Consensus       256 ---Pd~qht~ai~~V~Ys~t~~lYvTaSkDG~IklwDGVS~rCv~t~~~AH~gsevcSa~Ftk-n~kyiLsSG~DS~vkL  331 (430)
T KOG0640|consen  256 ---PDDQHTGAITQVRYSSTGSLYVTASKDGAIKLWDGVSNRCVRTIGNAHGGSEVCSAVFTK-NGKYILSSGKDSTVKL  331 (430)
T ss_pred             ---cccccccceeEEEecCCccEEEEeccCCcEEeeccccHHHHHHHHhhcCCceeeeEEEcc-CCeEEeecCCcceeee
Confidence               124577789999999999999999999999999988888887764 34 34688888886 8899999999999999


Q ss_pred             EeCCCCeeEEEeecc-----cccEEEEEEcCCCCeEEEEe-CCCcEEEEecCccceehc-ccccccceEEEEEeeCCCEE
Q 021247          228 YDAEGKSLVTAMSGH-----ASWVLSVDASPDGAAITTGS-SDRTVKLWDLNMRAAMQS-MTNHTDQVWGVSFRPLGGRV  300 (315)
Q Consensus       228 wd~~~~~~~~~~~~~-----~~~i~~~~~~~~~~~l~s~~-~d~~i~iwd~~~~~~~~~-~~~~~~~v~~~~~s~~~~~l  300 (315)
                      |++.++..+..+.+-     ..--+...|+....+++.-. ..+.+.-||.++...+.. -.+|++.+..+..||.+.-+
T Consensus       332 WEi~t~R~l~~YtGAg~tgrq~~rtqAvFNhtEdyVl~pDEas~slcsWdaRtadr~~l~slgHn~a~R~i~HSP~~p~F  411 (430)
T KOG0640|consen  332 WEISTGRMLKEYTGAGTTGRQKHRTQAVFNHTEDYVLFPDEASNSLCSWDARTADRVALLSLGHNGAVRWIVHSPVEPAF  411 (430)
T ss_pred             eeecCCceEEEEecCCcccchhhhhhhhhcCccceEEccccccCceeeccccchhhhhhcccCCCCCceEEEeCCCCCce
Confidence            999988887776542     11112334666666655433 245688899988655433 34899999999999999999


Q ss_pred             EEEeCCCcEEEee
Q 021247          301 VSVSDDKSISLYE  313 (315)
Q Consensus       301 ~s~~~d~~i~i~~  313 (315)
                      +++++|..+|.|-
T Consensus       412 mTcsdD~raRFWy  424 (430)
T KOG0640|consen  412 MTCSDDFRARFWY  424 (430)
T ss_pred             eeecccceeeeee
Confidence            9999999999995

>KOG0283 consensus WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=1.4e-32  Score=236.67  Aligned_cols=244  Identities=22%  Similarity=0.422  Sum_probs=201.6

Q ss_pred             hhccccceEEEEEeecCCCCCcEEEEeeCCCcEEEEcCCC----------------------------C---c-------
Q 021247           10 ENAHEESVWAVTWVPATETRPALLLTGSLDETVKLWRPDD----------------------------M---Q-------   51 (315)
Q Consensus        10 ~~~h~~~v~~v~~~~~~~~~~~~l~sgs~d~~v~~w~~~~----------------------------~---~-------   51 (315)
                      ..+|.+.||++.|+++++    |||+||.|+.|+||....                            .   +       
T Consensus       263 ~~ah~gaIw~mKFS~DGK----yLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~s~  338 (712)
T KOG0283|consen  263 SNAHKGAIWAMKFSHDGK----YLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRTSS  338 (712)
T ss_pred             ccccCCcEEEEEeCCCCc----eeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCccccccccccccccc
Confidence            459999999999999997    799999999999996432                            0   0       


Q ss_pred             ----------------------ceeeccccccceEEEEeCCCCCEEEEeeCCCeEEEEECCCCceeEEeeCCcccEEEEE
Q 021247           52 ----------------------LERTNTGHCLGVVSVAAHPSGIIAASASLDSFVRVFDVDTNASIATLEASPSEVWQMQ  109 (315)
Q Consensus        52 ----------------------~~~~~~~h~~~v~~~~~~~~g~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~v~~~~  109 (315)
                                            ....+.||.+.|+.|+|+.++ +|++++-|+++|||++....|+.++. |.+-|++++
T Consensus       339 ~~~~~~s~~~~~p~~~f~f~ekP~~ef~GHt~DILDlSWSKn~-fLLSSSMDKTVRLWh~~~~~CL~~F~-HndfVTcVa  416 (712)
T KOG0283|consen  339 SRKGSQSPCVLLPLKAFVFSEKPFCEFKGHTADILDLSWSKNN-FLLSSSMDKTVRLWHPGRKECLKVFS-HNDFVTCVA  416 (712)
T ss_pred             cccccCCccccCCCccccccccchhhhhccchhheecccccCC-eeEeccccccEEeecCCCcceeeEEe-cCCeeEEEE
Confidence                                  012236899999999999865 77899999999999999999988876 789999999


Q ss_pred             ECCCCCeEEEEecCCCeEEEEecCCcceeeeecCCCCCCCCCCccCCCCcceEEEEECCCCCEEEEecCCCcEEEEEccc
Q 021247          110 FDPKGTTLAVAGGGSASVKLWDTATWNLIATLSIPRPEGLKPTDKSSSKKFVLSVAWSPDGRRIACGSMDGTISVFDVTR  189 (315)
Q Consensus       110 ~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~s~dg~i~i~d~~~  189 (315)
                      |+|.+..++++|+-|+.|+||++...+.+.-..              .+..|++++|.|+|+..++|+.+|.+++|+.+.
T Consensus       417 FnPvDDryFiSGSLD~KvRiWsI~d~~Vv~W~D--------------l~~lITAvcy~PdGk~avIGt~~G~C~fY~t~~  482 (712)
T KOG0283|consen  417 FNPVDDRYFISGSLDGKVRLWSISDKKVVDWND--------------LRDLITAVCYSPDGKGAVIGTFNGYCRFYDTEG  482 (712)
T ss_pred             ecccCCCcEeecccccceEEeecCcCeeEeehh--------------hhhhheeEEeccCCceEEEEEeccEEEEEEccC
Confidence            999887788999999999999997655443222              234699999999999999999999999999988


Q ss_pred             ceeeeeec--CC------ccceEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCeeEEEeeccccc--EEEEEEcCCCCeEE
Q 021247          190 AKFLHHLE--GH------FMPVRSLVYSPVDPRVLFSASDDTHVHMYDAEGKSLVTAMSGHASW--VLSVDASPDGAAIT  259 (315)
Q Consensus       190 ~~~~~~~~--~~------~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~--i~~~~~~~~~~~l~  259 (315)
                      .+......  .|      ...|+.+.|.|.++..++..+.|..|+|||.+...++..+.++...  =....|+.+|++++
T Consensus       483 lk~~~~~~I~~~~~Kk~~~~rITG~Q~~p~~~~~vLVTSnDSrIRI~d~~~~~lv~KfKG~~n~~SQ~~Asfs~Dgk~IV  562 (712)
T KOG0283|consen  483 LKLVSDFHIRLHNKKKKQGKRITGLQFFPGDPDEVLVTSNDSRIRIYDGRDKDLVHKFKGFRNTSSQISASFSSDGKHIV  562 (712)
T ss_pred             CeEEEeeeEeeccCccccCceeeeeEecCCCCCeEEEecCCCceEEEeccchhhhhhhcccccCCcceeeeEccCCCEEE
Confidence            77654432  11      2279999999988888888999999999999888887777654322  23567888999999


Q ss_pred             EEeCCCcEEEEecC
Q 021247          260 TGSSDRTVKLWDLN  273 (315)
Q Consensus       260 s~~~d~~i~iwd~~  273 (315)
                      +++.|..|++|+..
T Consensus       563 s~seDs~VYiW~~~  576 (712)
T KOG0283|consen  563 SASEDSWVYIWKND  576 (712)
T ss_pred             EeecCceEEEEeCC
Confidence            99999999999973

>KOG0293 consensus WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=6.6e-33  Score=220.83  Aligned_cols=247  Identities=22%  Similarity=0.341  Sum_probs=204.5

Q ss_pred             hhhhhccccceEEEEEeecCCCCCcEEEEeeCCCcEEEEcCCCCcceeecc-ccccceEEEEeCCCCCEEEEeeCCCeEE
Q 021247            7 KSVENAHEESVWAVTWVPATETRPALLLTGSLDETVKLWRPDDMQLERTNT-GHCLGVVSVAAHPSGIIAASASLDSFVR   85 (315)
Q Consensus         7 ~~~~~~h~~~v~~v~~~~~~~~~~~~l~sgs~d~~v~~w~~~~~~~~~~~~-~h~~~v~~~~~~~~g~~l~s~~~d~~i~   85 (315)
                      ...+.+|..+|.-+.|+|+++    +|++++.|..+++||.+++.+....+ +|...+.+++|.|||..+++|+.|++|.
T Consensus       262 ~~tlvgh~~~V~yi~wSPDdr----yLlaCg~~e~~~lwDv~tgd~~~~y~~~~~~S~~sc~W~pDg~~~V~Gs~dr~i~  337 (519)
T KOG0293|consen  262 KKTLVGHSQPVSYIMWSPDDR----YLLACGFDEVLSLWDVDTGDLRHLYPSGLGFSVSSCAWCPDGFRFVTGSPDRTII  337 (519)
T ss_pred             eeeeecccCceEEEEECCCCC----eEEecCchHheeeccCCcchhhhhcccCcCCCcceeEEccCCceeEecCCCCcEE
Confidence            445679999999999999987    69999999999999999988766543 4568899999999999999999999999


Q ss_pred             EEECCCCceeEEeeC-CcccEEEEEECCCCCeEEEEecCCCeEEEEecCCcceeeeecCCCCCCCCCCccCCCCcceEEE
Q 021247           86 VFDVDTNASIATLEA-SPSEVWQMQFDPKGTTLAVAGGGSASVKLWDTATWNLIATLSIPRPEGLKPTDKSSSKKFVLSV  164 (315)
Q Consensus        86 ~w~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~  164 (315)
                      .||++.+.. ...++ ....|++++..++|+++++.+ .|..|++|+..+......+              .....|+++
T Consensus       338 ~wdlDgn~~-~~W~gvr~~~v~dlait~Dgk~vl~v~-~d~~i~l~~~e~~~dr~li--------------se~~~its~  401 (519)
T KOG0293|consen  338 MWDLDGNIL-GNWEGVRDPKVHDLAITYDGKYVLLVT-VDKKIRLYNREARVDRGLI--------------SEEQPITSF  401 (519)
T ss_pred             EecCCcchh-hcccccccceeEEEEEcCCCcEEEEEe-cccceeeechhhhhhhccc--------------cccCceeEE
Confidence            999976542 22222 235689999999999886654 7899999998653332222              223459999


Q ss_pred             EECCCCCEEEEecCCCcEEEEEcccceeeeeecCCccceE--EEEEcCCCCcEEEEEeCCCeEEEEeCCCCeeEEEeecc
Q 021247          165 AWSPDGRRIACGSMDGTISVFDVTRAKFLHHLEGHFMPVR--SLVYSPVDPRVLFSASDDTHVHMYDAEGKSLVTAMSGH  242 (315)
Q Consensus       165 ~~~~~~~~l~~~s~dg~i~i~d~~~~~~~~~~~~~~~~v~--~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~  242 (315)
                      +.+.+++++++.-.+..+++||++..+.+..+.||...-.  .-+|...+..++++|+.|++|+||+..+++++..+.||
T Consensus       402 ~iS~d~k~~LvnL~~qei~LWDl~e~~lv~kY~Ghkq~~fiIrSCFgg~~~~fiaSGSED~kvyIWhr~sgkll~~LsGH  481 (519)
T KOG0293|consen  402 SISKDGKLALVNLQDQEIHLWDLEENKLVRKYFGHKQGHFIIRSCFGGGNDKFIASGSEDSKVYIWHRISGKLLAVLSGH  481 (519)
T ss_pred             EEcCCCcEEEEEcccCeeEEeecchhhHHHHhhcccccceEEEeccCCCCcceEEecCCCceEEEEEccCCceeEeecCC
Confidence            9999999999999999999999998888888888865422  22455446679999999999999999999999999999


Q ss_pred             cccEEEEEEcCC-CCeEEEEeCCCcEEEEecC
Q 021247          243 ASWVLSVDASPD-GAAITTGSSDRTVKLWDLN  273 (315)
Q Consensus       243 ~~~i~~~~~~~~-~~~l~s~~~d~~i~iwd~~  273 (315)
                      ...+++++|+|. ..++|+|+.||+||||...
T Consensus       482 s~~vNcVswNP~~p~m~ASasDDgtIRIWg~~  513 (519)
T KOG0293|consen  482 SKTVNCVSWNPADPEMFASASDDGTIRIWGPS  513 (519)
T ss_pred             cceeeEEecCCCCHHHhhccCCCCeEEEecCC
Confidence            999999999995 5689999999999999765

>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]

Probab=100.00  E-value=9.5e-32  Score=226.68  Aligned_cols=283  Identities=22%  Similarity=0.356  Sum_probs=235.8

Q ss_pred             CcccchhhhhhccccceEEEEEeecCCCCCcEEEEeeCCCcEEEEcCCCCccee--eccccccceEE-EEeCC-CCCEEE
Q 021247            1 MKFAGLKSVENAHEESVWAVTWVPATETRPALLLTGSLDETVKLWRPDDMQLER--TNTGHCLGVVS-VAAHP-SGIIAA   76 (315)
Q Consensus         1 ~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~~~l~sgs~d~~v~~w~~~~~~~~~--~~~~h~~~v~~-~~~~~-~g~~l~   76 (315)
                      |..-++...+.+|..+|-.|+..+..     .++++|.||++++|+....+...  .+.+|.+-+.. +++-+ ++-.++
T Consensus         1 ~~~Y~ls~~l~gH~~DVr~v~~~~~~-----~i~s~sRd~t~~vw~~~~~~~l~~~~~~~~~g~i~~~i~y~e~~~~~l~   75 (745)
T KOG0301|consen    1 MPQYKLSHELEGHKSDVRAVAVTDGV-----CIISGSRDGTVKVWAKKGKQYLETHAFEGPKGFIANSICYAESDKGRLV   75 (745)
T ss_pred             CCcceeEEEeccCccchheeEecCCe-----EEeecCCCCceeeeeccCcccccceecccCcceeeccceeccccCcceE
Confidence            44556778899999999999977644     59999999999999875544333  35566666655 66654 555789


Q ss_pred             EeeCCCeEEEEECCCCceeEEeeCCcccEEEEEECCCCCeEEEEecCCCeEEEEecCCcceeeeecCCCCCCCCCCccCC
Q 021247           77 SASLDSFVRVFDVDTNASIATLEASPSEVWQMQFDPKGTTLAVAGGGSASVKLWDTATWNLIATLSIPRPEGLKPTDKSS  156 (315)
Q Consensus        77 s~~~d~~i~~w~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~  156 (315)
                      +|+.|.+|.+|.+....++.++++|...|.+++...++.  +++|++|.++++|-....  ...             ..+
T Consensus        76 ~g~~D~~i~v~~~~~~~P~~~LkgH~snVC~ls~~~~~~--~iSgSWD~TakvW~~~~l--~~~-------------l~g  138 (745)
T KOG0301|consen   76 VGGMDTTIIVFKLSQAEPLYTLKGHKSNVCSLSIGEDGT--LISGSWDSTAKVWRIGEL--VYS-------------LQG  138 (745)
T ss_pred             eecccceEEEEecCCCCchhhhhccccceeeeecCCcCc--eEecccccceEEecchhh--hcc-------------cCC
Confidence            999999999999999999999999999999998776655  689999999999976532  111             235


Q ss_pred             CCcceEEEEECCCCCEEEEecCCCcEEEEEcccceeeeeecCCccceEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCeeE
Q 021247          157 SKKFVLSVAWSPDGRRIACGSMDGTISVFDVTRAKFLHHLEGHFMPVRSLVYSPVDPRVLFSASDDTHVHMYDAEGKSLV  236 (315)
Q Consensus       157 ~~~~i~~~~~~~~~~~l~~~s~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~  236 (315)
                      |...|..++.-|++ .+++|+.|..|++|.-  ++.+..+.+|+..|+.+++-|  ...++|++.||.|++|++ .+..+
T Consensus       139 H~asVWAv~~l~e~-~~vTgsaDKtIklWk~--~~~l~tf~gHtD~VRgL~vl~--~~~flScsNDg~Ir~w~~-~ge~l  212 (745)
T KOG0301|consen  139 HTASVWAVASLPEN-TYVTGSADKTIKLWKG--GTLLKTFSGHTDCVRGLAVLD--DSHFLSCSNDGSIRLWDL-DGEVL  212 (745)
T ss_pred             cchheeeeeecCCC-cEEeccCcceeeeccC--CchhhhhccchhheeeeEEec--CCCeEeecCCceEEEEec-cCcee
Confidence            66778888888877 8899999999999984  778889999999999999986  346899999999999999 56688


Q ss_pred             EEeecccccEEEEEEcCCCCeEEEEeCCCcEEEEecCccceehcccccccceEEEEEeeCCCEEEEEeCCCcEEEeec
Q 021247          237 TAMSGHASWVLSVDASPDGAAITTGSSDRTVKLWDLNMRAAMQSMTNHTDQVWGVSFRPLGGRVVSVSDDKSISLYEY  314 (315)
Q Consensus       237 ~~~~~~~~~i~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~i~i~~~  314 (315)
                      ..+.+|...+.+++..++++.+++++.|++++||+..  ++.+.+......+|++.+-++| .|++||.||.||||..
T Consensus       213 ~~~~ghtn~vYsis~~~~~~~Ivs~gEDrtlriW~~~--e~~q~I~lPttsiWsa~~L~Ng-DIvvg~SDG~VrVfT~  287 (745)
T KOG0301|consen  213 LEMHGHTNFVYSISMALSDGLIVSTGEDRTLRIWKKD--ECVQVITLPTTSIWSAKVLLNG-DIVVGGSDGRVRVFTV  287 (745)
T ss_pred             eeeeccceEEEEEEecCCCCeEEEecCCceEEEeecC--ceEEEEecCccceEEEEEeeCC-CEEEeccCceEEEEEe
Confidence            8899999999999988888899999999999999886  6667776666799999999887 4999999999999974

>KOG1407 consensus WD40 repeat protein [Function unknown]

Probab=100.00  E-value=7.8e-32  Score=202.78  Aligned_cols=243  Identities=25%  Similarity=0.392  Sum_probs=208.6

Q ss_pred             eeccccccceEEEEeCCCCCEEEEeeCCCeEEEEECCCCceeE--EeeCCcccEEEEEECCCCCeEEEEecCCCeEEEEe
Q 021247           54 RTNTGHCLGVVSVAAHPSGIIAASASLDSFVRVFDVDTNASIA--TLEASPSEVWQMQFDPKGTTLAVAGGGSASVKLWD  131 (315)
Q Consensus        54 ~~~~~h~~~v~~~~~~~~g~~l~s~~~d~~i~~w~~~~~~~~~--~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~~d  131 (315)
                      +...+|...+.+++|+.+|..+++++.|+++++|+++......  ....|.+.|..++|+|..+.++++.+.|.+|++||
T Consensus        14 r~~~~~~~~v~Sv~wn~~g~~lasgs~dktv~v~n~e~~r~~~~~~~~gh~~svdql~w~~~~~d~~atas~dk~ir~wd   93 (313)
T KOG1407|consen   14 RELQGHVQKVHSVAWNCDGTKLASGSFDKTVSVWNLERDRFRKELVYRGHTDSVDQLCWDPKHPDLFATASGDKTIRIWD   93 (313)
T ss_pred             HHhhhhhhcceEEEEcccCceeeecccCCceEEEEecchhhhhhhcccCCCcchhhheeCCCCCcceEEecCCceEEEEE
Confidence            4567899999999999999999999999999999998875432  45678888999999999888889999999999999


Q ss_pred             cCCcceeeeecCCCCCCCCCCccCCCCcceEEEEECCCCCEEEEecCCCcEEEEEcccceeeeeecCCccceEEEEEcCC
Q 021247          132 TATWNLIATLSIPRPEGLKPTDKSSSKKFVLSVAWSPDGRRIACGSMDGTISVFDVTRAKFLHHLEGHFMPVRSLVYSPV  211 (315)
Q Consensus       132 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~s~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~  211 (315)
                      .+++++...+.....              -.-+.|+|+|++++++..|..|.+.|.++.+.....+ ....+..+.|+. 
T Consensus        94 ~r~~k~~~~i~~~~e--------------ni~i~wsp~g~~~~~~~kdD~it~id~r~~~~~~~~~-~~~e~ne~~w~~-  157 (313)
T KOG1407|consen   94 IRSGKCTARIETKGE--------------NINITWSPDGEYIAVGNKDDRITFIDARTYKIVNEEQ-FKFEVNEISWNN-  157 (313)
T ss_pred             eccCcEEEEeeccCc--------------ceEEEEcCCCCEEEEecCcccEEEEEecccceeehhc-ccceeeeeeecC-
Confidence            999998877643221              2368999999999999999999999998877665433 344677888885 


Q ss_pred             CCcEEEEEeCCCeEEEEeCCCCeeEEEeecccccEEEEEEcCCCCeEEEEeCCCcEEEEecCccceehcccccccceEEE
Q 021247          212 DPRVLFSASDDTHVHMYDAEGKSLVTAMSGHASWVLSVDASPDGAAITTGSSDRTVKLWDLNMRAAMQSMTNHTDQVWGV  291 (315)
Q Consensus       212 ~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~  291 (315)
                      ...+++.-...|+|.|-....-+.+..+..|...+.++.|+|+|+++|+|+.|..+.+||++.--+++.+..+.-+|..+
T Consensus       158 ~nd~Fflt~GlG~v~ILsypsLkpv~si~AH~snCicI~f~p~GryfA~GsADAlvSLWD~~ELiC~R~isRldwpVRTl  237 (313)
T KOG1407|consen  158 SNDLFFLTNGLGCVEILSYPSLKPVQSIKAHPSNCICIEFDPDGRYFATGSADALVSLWDVDELICERCISRLDWPVRTL  237 (313)
T ss_pred             CCCEEEEecCCceEEEEeccccccccccccCCcceEEEEECCCCceEeeccccceeeccChhHhhhheeeccccCceEEE
Confidence            44566666667899988877888888999999999999999999999999999999999999888888888898999999


Q ss_pred             EEeeCCCEEEEEeCCCcEEEe
Q 021247          292 SFRPLGGRVVSVSDDKSISLY  312 (315)
Q Consensus       292 ~~s~~~~~l~s~~~d~~i~i~  312 (315)
                      .||.+|++||++|+|..|-|=
T Consensus       238 SFS~dg~~lASaSEDh~IDIA  258 (313)
T KOG1407|consen  238 SFSHDGRMLASASEDHFIDIA  258 (313)
T ss_pred             EeccCcceeeccCccceEEeE
Confidence            999999999999999988663

>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]

Probab=100.00  E-value=2.3e-31  Score=230.90  Aligned_cols=256  Identities=29%  Similarity=0.471  Sum_probs=220.3

Q ss_pred             hhccccceEEEEEeecCCCCCcEEEEeeCCCcEEEEcCCCCcceeeccccccceEEEEeCCCCCEEEEeeCCCeEEEEEC
Q 021247           10 ENAHEESVWAVTWVPATETRPALLLTGSLDETVKLWRPDDMQLERTNTGHCLGVVSVAAHPSGIIAASASLDSFVRVFDV   89 (315)
Q Consensus        10 ~~~h~~~v~~v~~~~~~~~~~~~l~sgs~d~~v~~w~~~~~~~~~~~~~h~~~v~~~~~~~~g~~l~s~~~d~~i~~w~~   89 (315)
                      +.+|.+.|+++++..-+    .++++||.|.++++||..++++...+.+|...+.++...+  .++++|+.|.+|++|++
T Consensus       245 l~GH~g~V~~l~~~~~~----~~lvsgS~D~t~rvWd~~sg~C~~~l~gh~stv~~~~~~~--~~~~sgs~D~tVkVW~v  318 (537)
T KOG0274|consen  245 LVGHFGGVWGLAFPSGG----DKLVSGSTDKTERVWDCSTGECTHSLQGHTSSVRCLTIDP--FLLVSGSRDNTVKVWDV  318 (537)
T ss_pred             ccCCCCCceeEEEecCC----CEEEEEecCCcEEeEecCCCcEEEEecCCCceEEEEEccC--ceEeeccCCceEEEEec
Confidence            67999999999997523    3799999999999999999999999999999999988744  57888999999999999


Q ss_pred             CCCceeEEeeCCcccEEEEEECCCCCeEEEEecCCCeEEEEecCCcceeeeecCCCCCCCCCCccCCCCcceEEEEECCC
Q 021247           90 DTNASIATLEASPSEVWQMQFDPKGTTLAVAGGGSASVKLWDTATWNLIATLSIPRPEGLKPTDKSSSKKFVLSVAWSPD  169 (315)
Q Consensus        90 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~  169 (315)
                      +++.++.++.+|..+|.++..+  +. ++++|+.|++|++||.++++++.++.             +|..+|.++.+.+.
T Consensus       319 ~n~~~l~l~~~h~~~V~~v~~~--~~-~lvsgs~d~~v~VW~~~~~~cl~sl~-------------gH~~~V~sl~~~~~  382 (537)
T KOG0274|consen  319 TNGACLNLLRGHTGPVNCVQLD--EP-LLVSGSYDGTVKVWDPRTGKCLKSLS-------------GHTGRVYSLIVDSE  382 (537)
T ss_pred             cCcceEEEeccccccEEEEEec--CC-EEEEEecCceEEEEEhhhceeeeeec-------------CCcceEEEEEecCc
Confidence            9999999999899999999998  33 66889999999999999998887774             46677999988766


Q ss_pred             CCEEEEecCCCcEEEEEcccc-eeeeeecCCccceEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCeeEEEeec-ccccEE
Q 021247          170 GRRIACGSMDGTISVFDVTRA-KFLHHLEGHFMPVRSLVYSPVDPRVLFSASDDTHVHMYDAEGKSLVTAMSG-HASWVL  247 (315)
Q Consensus       170 ~~~l~~~s~dg~i~i~d~~~~-~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~-~~~~i~  247 (315)
                       ..+++|+.|+.|++||+++. +++..+.+|..-+..+.+   .+++|++++.|++|++||...++++..+.+ |...|.
T Consensus       383 -~~~~Sgs~D~~IkvWdl~~~~~c~~tl~~h~~~v~~l~~---~~~~Lvs~~aD~~Ik~WD~~~~~~~~~~~~~~~~~v~  458 (537)
T KOG0274|consen  383 -NRLLSGSLDTTIKVWDLRTKRKCIHTLQGHTSLVSSLLL---RDNFLVSSSADGTIKLWDAEEGECLRTLEGRHVGGVS  458 (537)
T ss_pred             -ceEEeeeeccceEeecCCchhhhhhhhcCCccccccccc---ccceeEeccccccEEEeecccCceeeeeccCCcccEE
Confidence             89999999999999999999 899999999988876665   357899999999999999999999999988 678888


Q ss_pred             EEEEcCCCCeEEEEeCCCcEEEEecCccceehccc-ccccceEEEEE
Q 021247          248 SVDASPDGAAITTGSSDRTVKLWDLNMRAAMQSMT-NHTDQVWGVSF  293 (315)
Q Consensus       248 ~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~-~~~~~v~~~~~  293 (315)
                      .+.+.  ...+++++.|+++++||++++.....+. ......+.+++
T Consensus       459 ~l~~~--~~~il~s~~~~~~~l~dl~~~~~~~~l~~~~~~~~~~~~~  503 (537)
T KOG0274|consen  459 ALALG--KEEILCSSDDGSVKLWDLRSGTLIRTLLSTDLGATWGVAP  503 (537)
T ss_pred             EeecC--cceEEEEecCCeeEEEecccCchhhhhhhccccccccccc
Confidence            88876  4578999999999999999988776652 22334444444

>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=5.7e-32  Score=226.55  Aligned_cols=277  Identities=23%  Similarity=0.306  Sum_probs=224.1

Q ss_pred             cEEEEeeCCCcEEEEcCCCCcc------eeeccccccceEEEEeCCCCCEEEEeeCCCeEEEEECCCC--ceeEEeeCCc
Q 021247           31 ALLLTGSLDETVKLWRPDDMQL------ERTNTGHCLGVVSVAAHPSGIIAASASLDSFVRVFDVDTN--ASIATLEASP  102 (315)
Q Consensus        31 ~~l~sgs~d~~v~~w~~~~~~~------~~~~~~h~~~v~~~~~~~~g~~l~s~~~d~~i~~w~~~~~--~~~~~~~~~~  102 (315)
                      .+|+|||.||.|++|+.....-      ...+..|.+-|+.+....+|+.++|++.|-+|++|+...+  .+..++..|.
T Consensus        38 ryLfTgGRDg~i~~W~~~~d~~~~s~~~~asme~HsDWVNDiiL~~~~~tlIS~SsDtTVK~W~~~~~~~~c~stir~H~  117 (735)
T KOG0308|consen   38 RYLFTGGRDGIIRLWSVTQDSNEPSTPYIASMEHHSDWVNDIILCGNGKTLISASSDTTVKVWNAHKDNTFCMSTIRTHK  117 (735)
T ss_pred             ceEEecCCCceEEEeccccccCCcccchhhhhhhhHhHHhhHHhhcCCCceEEecCCceEEEeecccCcchhHhhhhccc
Confidence            3899999999999998653221      2334568899999999999999999999999999999887  5778889999


Q ss_pred             ccEEEEEECCCCCeEEEEecCCCeEEEEecCCcc--eeeeecCCCCCCCCCCcc-CCCCcceEEEEECCCCCEEEEecCC
Q 021247          103 SEVWQMQFDPKGTTLAVAGGGSASVKLWDTATWN--LIATLSIPRPEGLKPTDK-SSSKKFVLSVAWSPDGRRIACGSMD  179 (315)
Q Consensus       103 ~~v~~~~~~~~~~~~~~~~~~d~~i~~~d~~~~~--~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~l~~~s~d  179 (315)
                      +.|.++++-...+.++++|+-|+.|.+||+.++.  ++.+++.     ...... .+++..|.+++-++.|..|++|+..
T Consensus       118 DYVkcla~~ak~~~lvaSgGLD~~IflWDin~~~~~l~~s~n~-----~t~~sl~sG~k~siYSLA~N~t~t~ivsGgte  192 (735)
T KOG0308|consen  118 DYVKCLAYIAKNNELVASGGLDRKIFLWDINTGTATLVASFNN-----VTVNSLGSGPKDSIYSLAMNQTGTIIVSGGTE  192 (735)
T ss_pred             chheeeeecccCceeEEecCCCccEEEEEccCcchhhhhhccc-----cccccCCCCCccceeeeecCCcceEEEecCcc
Confidence            9999999966667788999999999999998763  3332221     111111 2667789999999999999999999


Q ss_pred             CcEEEEEcccceeeeeecCCccceEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCeeEEEeecccccEEEEEEcCCCCeEE
Q 021247          180 GTISVFDVTRAKFLHHLEGHFMPVRSLVYSPVDPRVLFSASDDTHVHMYDAEGKSLVTAMSGHASWVLSVDASPDGAAIT  259 (315)
Q Consensus       180 g~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~  259 (315)
                      +.+++||.++++.+..+++|+..|+.+..++ ++..+++++.||+|++||+..+.++..+..|...++++..+|+-..+.
T Consensus       193 k~lr~wDprt~~kimkLrGHTdNVr~ll~~d-DGt~~ls~sSDgtIrlWdLgqQrCl~T~~vH~e~VWaL~~~~sf~~vY  271 (735)
T KOG0308|consen  193 KDLRLWDPRTCKKIMKLRGHTDNVRVLLVND-DGTRLLSASSDGTIRLWDLGQQRCLATYIVHKEGVWALQSSPSFTHVY  271 (735)
T ss_pred             cceEEeccccccceeeeeccccceEEEEEcC-CCCeEeecCCCceEEeeeccccceeeeEEeccCceEEEeeCCCcceEE
Confidence            9999999999999999999999999999997 788999999999999999999999999999999999999999999999


Q ss_pred             EEeCCCcEEEEecCccceehcccccccceEEEEEeeCCCEEEEEeCCCcEEEee
Q 021247          260 TGSSDRTVKLWDLNMRAAMQSMTNHTDQVWGVSFRPLGGRVVSVSDDKSISLYE  313 (315)
Q Consensus       260 s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~i~i~~  313 (315)
                      +|+.||.|..=|++.......+-....+|..+..+...+-+=.+..|+.|+-|.
T Consensus       272 sG~rd~~i~~Tdl~n~~~~tlick~daPv~~l~~~~~~~~~WvtTtds~I~rW~  325 (735)
T KOG0308|consen  272 SGGRDGNIYRTDLRNPAKSTLICKEDAPVLKLHLHEHDNSVWVTTTDSSIKRWK  325 (735)
T ss_pred             ecCCCCcEEecccCCchhheEeecCCCchhhhhhccccCCceeeeccccceecC
Confidence            999999999999987432222223334555555554333344555666666664

>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]

Probab=100.00  E-value=1.6e-30  Score=229.56  Aligned_cols=286  Identities=23%  Similarity=0.379  Sum_probs=231.9

Q ss_pred             hccccceEEEEEeecCCCCCcEEEEee--CCCcEEEEcCCC------------CcceeeccccccceEEEEeCCCCCEEE
Q 021247           11 NAHEESVWAVTWVPATETRPALLLTGS--LDETVKLWRPDD------------MQLERTNTGHCLGVVSVAAHPSGIIAA   76 (315)
Q Consensus        11 ~~h~~~v~~v~~~~~~~~~~~~l~sgs--~d~~v~~w~~~~------------~~~~~~~~~h~~~v~~~~~~~~g~~l~   76 (315)
                      .-++..|+.+.-+|++.    .++||+  .|+.+++|+.+.            .++.-+...|...|+|+.|+|+|.+||
T Consensus        10 ~H~~~~IfSIdv~pdg~----~~aTgGq~~d~~~~iW~~~~vl~~~~~~~~~l~k~l~~m~~h~~sv~CVR~S~dG~~lA   85 (942)
T KOG0973|consen   10 NHNEKSIFSIDVHPDGV----KFATGGQVLDGGIVIWSQDPVLDEKEEKNENLPKHLCTMDDHDGSVNCVRFSPDGSYLA   85 (942)
T ss_pred             ccCCeeEEEEEecCCce----eEecCCccccccceeeccccccchhhhhhcccchhheeeccccCceeEEEECCCCCeEe
Confidence            34456789999999886    599999  999999997531            112233457999999999999999999


Q ss_pred             EeeCCCeEEEEECCC-------C-----------ceeEEeeCCcccEEEEEECCCCCeEEEEecCCCeEEEEecCCccee
Q 021247           77 SASLDSFVRVFDVDT-------N-----------ASIATLEASPSEVWQMQFDPKGTTLAVAGGGSASVKLWDTATWNLI  138 (315)
Q Consensus        77 s~~~d~~i~~w~~~~-------~-----------~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~  138 (315)
                      +|+.|+.|.+|....       +           +++..+..|+..|..++|+|++. ++++++-|++|.+|+.++.+.+
T Consensus        86 sGSDD~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp~~~-~lvS~s~DnsViiwn~~tF~~~  164 (942)
T KOG0973|consen   86 SGSDDRLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSPDDS-LLVSVSLDNSVIIWNAKTFELL  164 (942)
T ss_pred             eccCcceEEEeeecccCCcccccccccccccceeeEEEEEecCCCccceeccCCCcc-EEEEecccceEEEEccccceee
Confidence            999999999999873       1           25567788999999999999877 5578999999999999998777


Q ss_pred             eeecCCCCCCCCCCccCCCCcceEEEEECCCCCEEEEecCCCcEEEEEcccceeeeeecCCcc------ceEEEEEcCCC
Q 021247          139 ATLSIPRPEGLKPTDKSSSKKFVLSVAWSPDGRRIACGSMDGTISVFDVTRAKFLHHLEGHFM------PVRSLVYSPVD  212 (315)
Q Consensus       139 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~s~dg~i~i~d~~~~~~~~~~~~~~~------~v~~~~~~~~~  212 (315)
                      ..+.             .|...|.++.|.|-|++||+-+.|++|++|++..-.....+..+..      -++-+.|+| +
T Consensus       165 ~vl~-------------~H~s~VKGvs~DP~Gky~ASqsdDrtikvwrt~dw~i~k~It~pf~~~~~~T~f~RlSWSP-D  230 (942)
T KOG0973|consen  165 KVLR-------------GHQSLVKGVSWDPIGKYFASQSDDRTLKVWRTSDWGIEKSITKPFEESPLTTFFLRLSWSP-D  230 (942)
T ss_pred             eeee-------------cccccccceEECCccCeeeeecCCceEEEEEcccceeeEeeccchhhCCCcceeeecccCC-C
Confidence            6664             4556689999999999999999999999999766555555444322      357789999 6


Q ss_pred             CcEEEEEeC----CCeEEEEeCCCCeeEEEeecccccEEEEEEcCC-----CC------------eEEEEeCCCcEEEEe
Q 021247          213 PRVLFSASD----DTHVHMYDAEGKSLVTAMSGHASWVLSVDASPD-----GA------------AITTGSSDRTVKLWD  271 (315)
Q Consensus       213 ~~~l~s~~~----d~~i~~wd~~~~~~~~~~~~~~~~i~~~~~~~~-----~~------------~l~s~~~d~~i~iwd  271 (315)
                      +++|++.-.    -..+.|.+-.+.+.-..+.+|.+++..+.|+|.     ..            .+|+|+.|++|.||.
T Consensus       231 G~~las~nA~n~~~~~~~IieR~tWk~~~~LvGH~~p~evvrFnP~lfe~~~~ng~~~~~~~~y~i~AvgSqDrSlSVW~  310 (942)
T KOG0973|consen  231 GHHLASPNAVNGGKSTIAIIERGTWKVDKDLVGHSAPVEVVRFNPKLFERNNKNGTSTQPNCYYCIAAVGSQDRSLSVWN  310 (942)
T ss_pred             cCeecchhhccCCcceeEEEecCCceeeeeeecCCCceEEEEeChHHhccccccCCccCCCcceEEEEEecCCccEEEEe
Confidence            778877643    346888888777777888999999999999982     12            689999999999999


Q ss_pred             cCccceehcccc-cccceEEEEEeeCCCEEEEEeCCCcEEEeecC
Q 021247          272 LNMRAAMQSMTN-HTDQVWGVSFRPLGGRVVSVSDDKSISLYEYS  315 (315)
Q Consensus       272 ~~~~~~~~~~~~-~~~~v~~~~~s~~~~~l~s~~~d~~i~i~~~~  315 (315)
                      ....+++..... -...|..++|+|||..|+.+|.||+|.++.|+
T Consensus       311 T~~~RPl~vi~~lf~~SI~DmsWspdG~~LfacS~DGtV~~i~Fe  355 (942)
T KOG0973|consen  311 TALPRPLFVIHNLFNKSIVDMSWSPDGFSLFACSLDGTVALIHFE  355 (942)
T ss_pred             cCCCCchhhhhhhhcCceeeeeEcCCCCeEEEEecCCeEEEEEcc
Confidence            987777654322 34689999999999999999999999999874

>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=100.00  E-value=5e-30  Score=218.20  Aligned_cols=279  Identities=24%  Similarity=0.356  Sum_probs=233.9

Q ss_pred             cceEEEEEeecCCCCCcEEEEeeCCCcEEEEcCCCCcc---------eeeccccccceEEEEeCCCCCEEEEeeCCCeEE
Q 021247           15 ESVWAVTWVPATETRPALLLTGSLDETVKLWRPDDMQL---------ERTNTGHCLGVVSVAAHPSGIIAASASLDSFVR   85 (315)
Q Consensus        15 ~~v~~v~~~~~~~~~~~~l~sgs~d~~v~~w~~~~~~~---------~~~~~~h~~~v~~~~~~~~g~~l~s~~~d~~i~   85 (315)
                      ..+-.+.|.|..... ..|+. -.++++..|.++...-         ...+.||...|.+++++.+...++||+. +.++
T Consensus       321 ~kiks~dv~~~~~~~-~~lv~-l~nNtv~~ysl~~s~~~~p~~~~~~~i~~~GHR~dVRsl~vS~d~~~~~Sga~-~Sik  397 (888)
T KOG0306|consen  321 AKIKSFDVTPSGGTE-NTLVL-LANNTVEWYSLENSGKTSPEADRTSNIEIGGHRSDVRSLCVSSDSILLASGAG-ESIK  397 (888)
T ss_pred             hheeEEEEEecCCcc-eeEEE-eecCceEEEEeccCCCCCccccccceeeeccchhheeEEEeecCceeeeecCC-CcEE
Confidence            378889999987654 33444 6678888887654111         1345799999999999999988888764 5699


Q ss_pred             EEECCCCceeEEeeCCcccEEEEEECCCCCeEEEEecCCCeEEEEecCCcceeeeecCCCCCCCCCCccCCCCcceEEEE
Q 021247           86 VFDVDTNASIATLEASPSEVWQMQFDPKGTTLAVAGGGSASVKLWDTATWNLIATLSIPRPEGLKPTDKSSSKKFVLSVA  165 (315)
Q Consensus        86 ~w~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~  165 (315)
                      +|+..+.++++++...  .+.+..|-|.++++ +.|...|.+.+||+.+...+.++.             .|...|.+++
T Consensus       398 iWn~~t~kciRTi~~~--y~l~~~Fvpgd~~I-v~G~k~Gel~vfdlaS~~l~Eti~-------------AHdgaIWsi~  461 (888)
T KOG0306|consen  398 IWNRDTLKCIRTITCG--YILASKFVPGDRYI-VLGTKNGELQVFDLASASLVETIR-------------AHDGAIWSIS  461 (888)
T ss_pred             EEEccCcceeEEeccc--cEEEEEecCCCceE-EEeccCCceEEEEeehhhhhhhhh-------------ccccceeeee
Confidence            9999999999998764  78888999988876 578899999999998876665442             4566799999


Q ss_pred             ECCCCCEEEEecCCCcEEEEEccc-----ceeeeeec-------CCccceEEEEEcCCCCcEEEEEeCCCeEEEEeCCCC
Q 021247          166 WSPDGRRIACGSMDGTISVFDVTR-----AKFLHHLE-------GHFMPVRSLVYSPVDPRVLFSASDDTHVHMYDAEGK  233 (315)
Q Consensus       166 ~~~~~~~l~~~s~dg~i~i~d~~~-----~~~~~~~~-------~~~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~  233 (315)
                      .+||+..+++|+.|.+|++||..-     +.....+.       .-...|.++.++| ++++|+.+-.|.++++|-+.+.
T Consensus       462 ~~pD~~g~vT~saDktVkfWdf~l~~~~~gt~~k~lsl~~~rtLel~ddvL~v~~Sp-dgk~LaVsLLdnTVkVyflDtl  540 (888)
T KOG0306|consen  462 LSPDNKGFVTGSADKTVKFWDFKLVVSVPGTQKKVLSLKHTRTLELEDDVLCVSVSP-DGKLLAVSLLDNTVKVYFLDTL  540 (888)
T ss_pred             ecCCCCceEEecCCcEEEEEeEEEEeccCcccceeeeeccceEEeccccEEEEEEcC-CCcEEEEEeccCeEEEEEecce
Confidence            999999999999999999999631     11111111       1245789999999 7889999999999999999998


Q ss_pred             eeEEEeecccccEEEEEEcCCCCeEEEEeCCCcEEEEecCccceehcccccccceEEEEEeeCCCEEEEEeCCCcEEEee
Q 021247          234 SLVTAMSGHASWVLSVDASPDGAAITTGSSDRTVKLWDLNMRAAMQSMTNHTDQVWGVSFRPLGGRVVSVSDDKSISLYE  313 (315)
Q Consensus       234 ~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~i~i~~  313 (315)
                      +....+-||.-+|.+++++|++.+++||+.|.+|++|-++-|.+.+.+-+|.+.|.+|.|-|..+.++++|-|+.|+-||
T Consensus       541 KFflsLYGHkLPV~smDIS~DSklivTgSADKnVKiWGLdFGDCHKS~fAHdDSvm~V~F~P~~~~FFt~gKD~kvKqWD  620 (888)
T KOG0306|consen  541 KFFLSLYGHKLPVLSMDISPDSKLIVTGSADKNVKIWGLDFGDCHKSFFAHDDSVMSVQFLPKTHLFFTCGKDGKVKQWD  620 (888)
T ss_pred             eeeeeecccccceeEEeccCCcCeEEeccCCCceEEeccccchhhhhhhcccCceeEEEEcccceeEEEecCcceEEeec
Confidence            88888899999999999999999999999999999999999999999999999999999999999999999999999997

>KOG0300 consensus WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=5e-31  Score=203.97  Aligned_cols=289  Identities=22%  Similarity=0.296  Sum_probs=234.8

Q ss_pred             cchhhhhhccccceEEEEEeecCCCCCcEEEEeeCCCcEEEEcCCCCcceeeccccccceEEEEeCCCCCEEEEeeCCCe
Q 021247            4 AGLKSVENAHEESVWAVTWVPATETRPALLLTGSLDETVKLWRPDDMQLERTNTGHCLGVVSVAAHPSGIIAASASLDSF   83 (315)
Q Consensus         4 ~~~~~~~~~h~~~v~~v~~~~~~~~~~~~l~sgs~d~~v~~w~~~~~~~~~~~~~h~~~v~~~~~~~~g~~l~s~~~d~~   83 (315)
                      +++...+.||.+.||.|+--..    .+++.++|.|.+.+||..+.+.++..+.||.+.|+++.|++++.++++++.|++
T Consensus       138 ~~lvre~~GHkDGiW~Vaa~~t----qpi~gtASADhTA~iWs~Esg~CL~~Y~GH~GSVNsikfh~s~~L~lTaSGD~t  213 (481)
T KOG0300|consen  138 FRLVRELEGHKDGIWHVAADST----QPICGTASADHTARIWSLESGACLATYTGHTGSVNSIKFHNSGLLLLTASGDET  213 (481)
T ss_pred             EeehhhhcccccceeeehhhcC----CcceeecccccceeEEeeccccceeeecccccceeeEEeccccceEEEccCCcc
Confidence            3445567899999999986432    238999999999999999999999999999999999999999999999999999


Q ss_pred             EEEEEC------CCC----------------------------------ceeEEeeCCcccEEEEEECCCCCeEEEEecC
Q 021247           84 VRVFDV------DTN----------------------------------ASIATLEASPSEVWQMQFDPKGTTLAVAGGG  123 (315)
Q Consensus        84 i~~w~~------~~~----------------------------------~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~  123 (315)
                      .++|..      ..+                                  .++..+.+|...|.+..|-..+..+ +++++
T Consensus       214 aHIW~~av~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~tiRvPl~~ltgH~~vV~a~dWL~gg~Q~-vTaSW  292 (481)
T KOG0300|consen  214 AHIWKAAVNWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHTIRVPLMRLTGHRAVVSACDWLAGGQQM-VTASW  292 (481)
T ss_pred             hHHHHHhhcCcCCCCCCCCCCCchhhhhcccccccccccccccCCceeeeeeeeeeccccceEehhhhcCccee-eeeec
Confidence            999972      110                                  0233455677778888888777754 78999


Q ss_pred             CCeEEEEecCCcceeeeecCCCCCCCCCCccCCCCcceEEEEECCCCCEEEEecCCCcEEEEEcccce-eeeeecCCccc
Q 021247          124 SASVKLWDTATWNLIATLSIPRPEGLKPTDKSSSKKFVLSVAWSPDGRRIACGSMDGTISVFDVTRAK-FLHHLEGHFMP  202 (315)
Q Consensus       124 d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~s~dg~i~i~d~~~~~-~~~~~~~~~~~  202 (315)
                      |.+..+||.++++.+..+..             |....+.++-+|..+++++.+.|.++++||.+..- .+..+.+|...
T Consensus       293 DRTAnlwDVEtge~v~~LtG-------------Hd~ELtHcstHptQrLVvTsSrDtTFRLWDFReaI~sV~VFQGHtdt  359 (481)
T KOG0300|consen  293 DRTANLWDVETGEVVNILTG-------------HDSELTHCSTHPTQRLVVTSSRDTTFRLWDFREAIQSVAVFQGHTDT  359 (481)
T ss_pred             cccceeeeeccCceeccccC-------------cchhccccccCCcceEEEEeccCceeEeccchhhcceeeeecccccc
Confidence            99999999999888876643             44446778889999999999999999999997442 35678899999


Q ss_pred             eEEEEEcCCCCcEEEEEeCCCeEEEEeCCCC-eeEEEeecccccEEEEEEcCCCCeEEEEeCCCcEEEEecCccceeh--
Q 021247          203 VRSLVYSPVDPRVLFSASDDTHVHMYDAEGK-SLVTAMSGHASWVLSVDASPDGAAITTGSSDRTVKLWDLNMRAAMQ--  279 (315)
Q Consensus       203 v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~-~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~--  279 (315)
                      |+++.|..  +..+++|++|.+|++||+++. ..+..+. -..+++.++++..+.+++.-..++.|++||++-.+ +.  
T Consensus       360 VTS~vF~~--dd~vVSgSDDrTvKvWdLrNMRsplATIR-tdS~~NRvavs~g~~iIAiPhDNRqvRlfDlnG~R-laRl  435 (481)
T KOG0300|consen  360 VTSVVFNT--DDRVVSGSDDRTVKVWDLRNMRSPLATIR-TDSPANRVAVSKGHPIIAIPHDNRQVRLFDLNGNR-LARL  435 (481)
T ss_pred             eeEEEEec--CCceeecCCCceEEEeeeccccCcceeee-cCCccceeEeecCCceEEeccCCceEEEEecCCCc-cccC
Confidence            99999985  447999999999999999864 4455554 35678899999888899999999999999998433 22  


Q ss_pred             ---cccccccceEEEEEeeC--CCEEEEEeCCCcEEEeec
Q 021247          280 ---SMTNHTDQVWGVSFRPL--GGRVVSVSDDKSISLYEY  314 (315)
Q Consensus       280 ---~~~~~~~~v~~~~~s~~--~~~l~s~~~d~~i~i~~~  314 (315)
                         .-.+|..-|.+++|...  -.-|+++|-|+.+.=|++
T Consensus       436 PrtsRqgHrRMV~c~AW~eehp~cnLftcGFDR~v~gW~i  475 (481)
T KOG0300|consen  436 PRTSRQGHRRMVTCCAWLEEHPACNLFTCGFDRMVAGWKI  475 (481)
T ss_pred             CcccccccceeeeeeeccccCcccccccccccceeeeeEe
Confidence               23578888999999854  246899999999988875

>KOG0641 consensus WD40 repeat protein [General function prediction only]

Probab=100.00  E-value=4.9e-29  Score=184.44  Aligned_cols=282  Identities=22%  Similarity=0.331  Sum_probs=221.3

Q ss_pred             ccceEEEEEeecCCCCCcEEEEeeCCCcEEEEcCCCC---------------cceeeccccccceEEEEeCCCCCEEEEe
Q 021247           14 EESVWAVTWVPATETRPALLLTGSLDETVKLWRPDDM---------------QLERTNTGHCLGVVSVAAHPSGIIAASA   78 (315)
Q Consensus        14 ~~~v~~v~~~~~~~~~~~~l~sgs~d~~v~~w~~~~~---------------~~~~~~~~h~~~v~~~~~~~~g~~l~s~   78 (315)
                      +..|-+|+|.|.+.    +-+.||...+.++-.+...               .+.+..+.|.+.|.|.+|+|+|.++++|
T Consensus        32 sqairav~fhp~g~----lyavgsnskt~ric~yp~l~~~r~~hea~~~pp~v~~kr~khhkgsiyc~~ws~~geliatg  107 (350)
T KOG0641|consen   32 SQAIRAVAFHPAGG----LYAVGSNSKTFRICAYPALIDLRHAHEAAKQPPSVLCKRNKHHKGSIYCTAWSPCGELIATG  107 (350)
T ss_pred             hhheeeEEecCCCc----eEEeccCCceEEEEccccccCcccccccccCCCeEEeeeccccCccEEEEEecCccCeEEec
Confidence            55788999999875    6888998899888753210               0123345688999999999999999999


Q ss_pred             eCCCeEEEEECCCCcee-----EEeeCCcccEEEEEECCC---CCeEEEE-ecCCCeEEEEecCCcceeeeecCCCCCCC
Q 021247           79 SLDSFVRVFDVDTNASI-----ATLEASPSEVWQMQFDPK---GTTLAVA-GGGSASVKLWDTATWNLIATLSIPRPEGL  149 (315)
Q Consensus        79 ~~d~~i~~w~~~~~~~~-----~~~~~~~~~v~~~~~~~~---~~~~~~~-~~~d~~i~~~d~~~~~~~~~~~~~~~~~~  149 (315)
                      ++|++|++...+...+.     ..+..|.+.|..++|-.+   +..++++ |.+|..|.+-|..+++...-         
T Consensus       108 sndk~ik~l~fn~dt~~~~g~dle~nmhdgtirdl~fld~~~s~~~il~s~gagdc~iy~tdc~~g~~~~a---------  178 (350)
T KOG0641|consen  108 SNDKTIKVLPFNADTCNATGHDLEFNMHDGTIRDLAFLDDPESGGAILASAGAGDCKIYITDCGRGQGFHA---------  178 (350)
T ss_pred             CCCceEEEEecccccccccCcceeeeecCCceeeeEEecCCCcCceEEEecCCCcceEEEeecCCCCccee---------
Confidence            99999999887765432     356678889999998532   3334443 44566666666655544333         


Q ss_pred             CCCccCCCCcceEEEEECCCCCEEEEecCCCcEEEEEcccceeeeeecC-------CccceEEEEEcCCCCcEEEEEeCC
Q 021247          150 KPTDKSSSKKFVLSVAWSPDGRRIACGSMDGTISVFDVTRAKFLHHLEG-------HFMPVRSLVYSPVDPRVLFSASDD  222 (315)
Q Consensus       150 ~~~~~~~~~~~i~~~~~~~~~~~l~~~s~dg~i~i~d~~~~~~~~~~~~-------~~~~v~~~~~~~~~~~~l~s~~~d  222 (315)
                          .++|...|..+ ++.+|-.+++|+.|.+|++||++-+..+..+..       ....|.+++..| .+++|++|-.|
T Consensus       179 ----~sghtghilal-yswn~~m~~sgsqdktirfwdlrv~~~v~~l~~~~~~~glessavaav~vdp-sgrll~sg~~d  252 (350)
T KOG0641|consen  179 ----LSGHTGHILAL-YSWNGAMFASGSQDKTIRFWDLRVNSCVNTLDNDFHDGGLESSAVAAVAVDP-SGRLLASGHAD  252 (350)
T ss_pred             ----ecCCcccEEEE-EEecCcEEEccCCCceEEEEeeeccceeeeccCcccCCCcccceeEEEEECC-CcceeeeccCC
Confidence                24556667654 345678999999999999999988777666532       235788999998 67899999999


Q ss_pred             CeEEEEeCCCCeeEEEeecccccEEEEEEcCCCCeEEEEeCCCcEEEEecCccce-----ehcccccccceEEEEEeeCC
Q 021247          223 THVHMYDAEGKSLVTAMSGHASWVLSVDASPDGAAITTGSSDRTVKLWDLNMRAA-----MQSMTNHTDQVWGVSFRPLG  297 (315)
Q Consensus       223 ~~i~~wd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~-----~~~~~~~~~~v~~~~~s~~~  297 (315)
                      ....+||++++..++.+-.|...|.++.|+|.-.++++++.|.+|++-|+.- ..     .-....|.+.+..+.|+|..
T Consensus       253 ssc~lydirg~r~iq~f~phsadir~vrfsp~a~yllt~syd~~ikltdlqg-dla~el~~~vv~ehkdk~i~~rwh~~d  331 (350)
T KOG0641|consen  253 SSCMLYDIRGGRMIQRFHPHSADIRCVRFSPGAHYLLTCSYDMKIKLTDLQG-DLAHELPIMVVAEHKDKAIQCRWHPQD  331 (350)
T ss_pred             CceEEEEeeCCceeeeeCCCccceeEEEeCCCceEEEEecccceEEEeeccc-chhhcCceEEEEeccCceEEEEecCcc
Confidence            9999999999999999999999999999999999999999999999999863 32     22345688899999999998


Q ss_pred             CEEEEEeCCCcEEEeecC
Q 021247          298 GRVVSVSDDKSISLYEYS  315 (315)
Q Consensus       298 ~~l~s~~~d~~i~i~~~~  315 (315)
                      --+++.+.|+++.+|.+.
T Consensus       332 ~sfisssadkt~tlwa~~  349 (350)
T KOG0641|consen  332 FSFISSSADKTATLWALN  349 (350)
T ss_pred             ceeeeccCcceEEEeccC
Confidence            889999999999999864

>KOG0294 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.98  E-value=5.2e-30  Score=197.80  Aligned_cols=240  Identities=21%  Similarity=0.377  Sum_probs=202.1

Q ss_pred             hccccceEEEEEeecCCCCCcEEEEeeCCCcEEEEcCCCCcceeeccccccceEEEEeCCCCC--EEEEeeCCCeEEEEE
Q 021247           11 NAHEESVWAVTWVPATETRPALLLTGSLDETVKLWRPDDMQLERTNTGHCLGVVSVAAHPSGI--IAASASLDSFVRVFD   88 (315)
Q Consensus        11 ~~h~~~v~~v~~~~~~~~~~~~l~sgs~d~~v~~w~~~~~~~~~~~~~h~~~v~~~~~~~~g~--~l~s~~~d~~i~~w~   88 (315)
                      .+|..++++|+-+-      .+++|||.|.+|+|||+........+-.|.+.|+++.|.+.-.  .|++|+.||.|-+|+
T Consensus        40 ~aH~~sitavAVs~------~~~aSGssDetI~IYDm~k~~qlg~ll~HagsitaL~F~~~~S~shLlS~sdDG~i~iw~  113 (362)
T KOG0294|consen   40 SAHAGSITALAVSG------PYVASGSSDETIHIYDMRKRKQLGILLSHAGSITALKFYPPLSKSHLLSGSDDGHIIIWR  113 (362)
T ss_pred             cccccceeEEEecc------eeEeccCCCCcEEEEeccchhhhcceeccccceEEEEecCCcchhheeeecCCCcEEEEE
Confidence            58999999999753      3799999999999999988877777778999999999998764  889999999999999


Q ss_pred             CCCCceeEEeeCCcccEEEEEECCCCCeEEEEecCCCeEEEEecCCcceeeeecCCCCCCCCCCccCCCCcceEEEEECC
Q 021247           89 VDTNASIATLEASPSEVWQMQFDPKGTTLAVAGGGSASVKLWDTATWNLIATLSIPRPEGLKPTDKSSSKKFVLSVAWSP  168 (315)
Q Consensus        89 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~  168 (315)
                      ...-.++.+++.|...|+.++.||+++ ++++-++|+.+++||+-+++.-..+++...              -+.+.|+|
T Consensus       114 ~~~W~~~~slK~H~~~Vt~lsiHPS~K-LALsVg~D~~lr~WNLV~Gr~a~v~~L~~~--------------at~v~w~~  178 (362)
T KOG0294|consen  114 VGSWELLKSLKAHKGQVTDLSIHPSGK-LALSVGGDQVLRTWNLVRGRVAFVLNLKNK--------------ATLVSWSP  178 (362)
T ss_pred             cCCeEEeeeecccccccceeEecCCCc-eEEEEcCCceeeeehhhcCccceeeccCCc--------------ceeeEEcC
Confidence            999999999999999999999999987 667788999999999988776555544322              23589999


Q ss_pred             CCCEEEEecCCCcEEEEEcccceeeeeecCCccceEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCeeEEEeecccccEEE
Q 021247          169 DGRRIACGSMDGTISVFDVTRAKFLHHLEGHFMPVRSLVYSPVDPRVLFSASDDTHVHMYDAEGKSLVTAMSGHASWVLS  248 (315)
Q Consensus       169 ~~~~l~~~s~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~i~~  248 (315)
                      .|.+|+.+..+ .|-+|.+........+... ..+.++.|.  ++..|++|++|+.|.+||.........+.+|...|-+
T Consensus       179 ~Gd~F~v~~~~-~i~i~q~d~A~v~~~i~~~-~r~l~~~~l--~~~~L~vG~d~~~i~~~D~ds~~~~~~~~AH~~RVK~  254 (362)
T KOG0294|consen  179 QGDHFVVSGRN-KIDIYQLDNASVFREIENP-KRILCATFL--DGSELLVGGDNEWISLKDTDSDTPLTEFLAHENRVKD  254 (362)
T ss_pred             CCCEEEEEecc-EEEEEecccHhHhhhhhcc-ccceeeeec--CCceEEEecCCceEEEeccCCCccceeeecchhheee
Confidence            99999888665 6889988776655444322 235566665  5779999999999999999988888899999999988


Q ss_pred             EE--EcCCCCeEEEEeCCCcEEEEecCcc
Q 021247          249 VD--ASPDGAAITTGSSDRTVKLWDLNMR  275 (315)
Q Consensus       249 ~~--~~~~~~~l~s~~~d~~i~iwd~~~~  275 (315)
                      +.  -+|++.+|+|++.||.|++||++..
T Consensus       255 i~~~~~~~~~~lvTaSSDG~I~vWd~~~~  283 (362)
T KOG0294|consen  255 IASYTNPEHEYLVTASSDGFIKVWDIDME  283 (362)
T ss_pred             eEEEecCCceEEEEeccCceEEEEEcccc
Confidence            87  3667889999999999999999865

>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.98  E-value=4e-30  Score=207.48  Aligned_cols=280  Identities=19%  Similarity=0.328  Sum_probs=225.4

Q ss_pred             hhhhhccccceEEEEEeecCCCCCcEEEEeeCCCcEEEEcCCCCcce-----------------eec-cccccceEEEEe
Q 021247            7 KSVENAHEESVWAVTWVPATETRPALLLTGSLDETVKLWRPDDMQLE-----------------RTN-TGHCLGVVSVAA   68 (315)
Q Consensus         7 ~~~~~~h~~~v~~v~~~~~~~~~~~~l~sgs~d~~v~~w~~~~~~~~-----------------~~~-~~h~~~v~~~~~   68 (315)
                      ..+...|.-+|.+|+.+|...    +.++++.|++|.=|+..+++..                 +.. .+|...+.++++
T Consensus       135 ~~~~~~H~~s~~~vals~d~~----~~fsask~g~i~kw~v~tgk~~~~i~~~~ev~k~~~~~~k~~r~~h~keil~~av  210 (479)
T KOG0299|consen  135 FRVIGKHQLSVTSVALSPDDK----RVFSASKDGTILKWDVLTGKKDRYIIERDEVLKSHGNPLKESRKGHVKEILTLAV  210 (479)
T ss_pred             ceeeccccCcceEEEeecccc----ceeecCCCcceeeeehhcCcccccccccchhhhhccCCCCcccccccceeEEEEE
Confidence            345678999999999999775    6999999999999986554311                 111 378889999999


Q ss_pred             CCCCCEEEEeeCCCeEEEEECCCCceeEEeeCCcccEEEEEECCCCCeEEEEecCCCeEEEEecCCcceeeeecCCCCCC
Q 021247           69 HPSGIIAASASLDSFVRVFDVDTNASIATLEASPSEVWQMQFDPKGTTLAVAGGGSASVKLWDTATWNLIATLSIPRPEG  148 (315)
Q Consensus        69 ~~~g~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~  148 (315)
                      ++||++|++|+.|..|.||+.++.+.+..+.+|.+.|.+++|-...+.+ ++++.|+.+++|++.....+.++       
T Consensus       211 S~Dgkylatgg~d~~v~Iw~~~t~ehv~~~~ghr~~V~~L~fr~gt~~l-ys~s~Drsvkvw~~~~~s~vetl-------  282 (479)
T KOG0299|consen  211 SSDGKYLATGGRDRHVQIWDCDTLEHVKVFKGHRGAVSSLAFRKGTSEL-YSASADRSVKVWSIDQLSYVETL-------  282 (479)
T ss_pred             cCCCcEEEecCCCceEEEecCcccchhhcccccccceeeeeeecCccce-eeeecCCceEEEehhHhHHHHHH-------
Confidence            9999999999999999999999999999999999999999998655544 67889999999999876555444       


Q ss_pred             CCCCccCCCCcceEEEEECCCCCEEEEecCCCcEEEEEcccceeeeeecCCccceEEEEEcCCCCcEEEEEeCCCeEEEE
Q 021247          149 LKPTDKSSSKKFVLSVAWSPDGRRIACGSMDGTISVFDVTRAKFLHHLEGHFMPVRSLVYSPVDPRVLFSASDDTHVHMY  228 (315)
Q Consensus       149 ~~~~~~~~~~~~i~~~~~~~~~~~l~~~s~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~~w  228 (315)
                            .+|++.|..+.-..-++.+-+|+.|+++++|++. ......+.++...+.+++|-  +...+++|+++|.|.+|
T Consensus       283 ------yGHqd~v~~IdaL~reR~vtVGgrDrT~rlwKi~-eesqlifrg~~~sidcv~~I--n~~HfvsGSdnG~IaLW  353 (479)
T KOG0299|consen  283 ------YGHQDGVLGIDALSRERCVTVGGRDRTVRLWKIP-EESQLIFRGGEGSIDCVAFI--NDEHFVSGSDNGSIALW  353 (479)
T ss_pred             ------hCCccceeeechhcccceEEeccccceeEEEecc-ccceeeeeCCCCCeeeEEEe--cccceeeccCCceEEEe
Confidence                  3566668888777777888888899999999993 34445667888899999996  45689999999999999


Q ss_pred             eCCCCeeEEEee------------cccccEEEEEEcCCCCeEEEEeCCCcEEEEecCcc----ceehcccccccceEEEE
Q 021247          229 DAEGKSLVTAMS------------GHASWVLSVDASPDGAAITTGSSDRTVKLWDLNMR----AAMQSMTNHTDQVWGVS  292 (315)
Q Consensus       229 d~~~~~~~~~~~------------~~~~~i~~~~~~~~~~~l~s~~~d~~i~iwd~~~~----~~~~~~~~~~~~v~~~~  292 (315)
                      ++...+++....            .++.||++++..|...++++|+.+|.|++|.+..+    .++..++ -.+.|++++
T Consensus       354 s~~KKkplf~~~~AHgv~~~~~~~~~~~Witsla~i~~sdL~asGS~~G~vrLW~i~~g~r~i~~l~~ls-~~GfVNsl~  432 (479)
T KOG0299|consen  354 SLLKKKPLFTSRLAHGVIPELDPVNGNFWITSLAVIPGSDLLASGSWSGCVRLWKIEDGLRAINLLYSLS-LVGFVNSLA  432 (479)
T ss_pred             eecccCceeEeeccccccCCccccccccceeeeEecccCceEEecCCCCceEEEEecCCccccceeeecc-cccEEEEEE
Confidence            988776554322            12349999999999999999999999999998765    2344443 457899999


Q ss_pred             EeeCCCEEE-EEeCCCc
Q 021247          293 FRPLGGRVV-SVSDDKS  308 (315)
Q Consensus       293 ~s~~~~~l~-s~~~d~~  308 (315)
                      |+++|+.++ ..|....
T Consensus       433 f~~sgk~ivagiGkEhR  449 (479)
T KOG0299|consen  433 FSNSGKRIVAGIGKEHR  449 (479)
T ss_pred             EccCCCEEEEecccccc
Confidence            999999654 4554443

>PTZ00421 coronin; Provisional

Probab=99.98  E-value=5.9e-29  Score=215.59  Aligned_cols=247  Identities=17%  Similarity=0.201  Sum_probs=187.1

Q ss_pred             cceEEEEeCCCCCEEEEeeCCCeEEEEECCCCcee-------------EEeeCCcccEEEEEECCCCCeEEEEecCCCeE
Q 021247           61 LGVVSVAAHPSGIIAASASLDSFVRVFDVDTNASI-------------ATLEASPSEVWQMQFDPKGTTLAVAGGGSASV  127 (315)
Q Consensus        61 ~~v~~~~~~~~g~~l~s~~~d~~i~~w~~~~~~~~-------------~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i  127 (315)
                      ..|......+++..+++++.+.....|+...+..+             ..+.+|.+.|.+++|+|.+..++++++.|++|
T Consensus        21 ~~i~~~~~~~d~~~~~~~n~~~~a~~w~~~gg~~v~~~~~~G~~~~~~~~l~GH~~~V~~v~fsP~d~~~LaSgS~DgtI  100 (493)
T PTZ00421         21 LNVTPSTALWDCSNTIACNDRFIAVPWQQLGSTAVLKHTDYGKLASNPPILLGQEGPIIDVAFNPFDPQKLFTASEDGTI  100 (493)
T ss_pred             eccccccccCCCCCcEeECCceEEEEEecCCceEEeeccccccCCCCCceEeCCCCCEEEEEEcCCCCCEEEEEeCCCEE
Confidence            34555556667666677777777777775544322             13567888999999999434466889999999


Q ss_pred             EEEecCCcceeeeecCCCCCCCCCCccCCCCcceEEEEECCCC-CEEEEecCCCcEEEEEcccceeeeeecCCccceEEE
Q 021247          128 KLWDTATWNLIATLSIPRPEGLKPTDKSSSKKFVLSVAWSPDG-RRIACGSMDGTISVFDVTRAKFLHHLEGHFMPVRSL  206 (315)
Q Consensus       128 ~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~l~~~s~dg~i~i~d~~~~~~~~~~~~~~~~v~~~  206 (315)
                      ++||+.........      .........|...|.+++|+|++ ++|++++.|+.|++||+++++....+.+|...|.++
T Consensus       101 kIWdi~~~~~~~~~------~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~DgtVrIWDl~tg~~~~~l~~h~~~V~sl  174 (493)
T PTZ00421        101 MGWGIPEEGLTQNI------SDPIVHLQGHTKKVGIVSFHPSAMNVLASAGADMVVNVWDVERGKAVEVIKCHSDQITSL  174 (493)
T ss_pred             EEEecCCCcccccc------CcceEEecCCCCcEEEEEeCcCCCCEEEEEeCCCEEEEEECCCCeEEEEEcCCCCceEEE
Confidence            99999754221100      00011223566779999999975 689999999999999999999888999999999999


Q ss_pred             EEcCCCCcEEEEEeCCCeEEEEeCCCCeeEEEeeccccc-EEEEEEcCCCCeEEEEe----CCCcEEEEecCccc-eehc
Q 021247          207 VYSPVDPRVLFSASDDTHVHMYDAEGKSLVTAMSGHASW-VLSVDASPDGAAITTGS----SDRTVKLWDLNMRA-AMQS  280 (315)
Q Consensus       207 ~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~-i~~~~~~~~~~~l~s~~----~d~~i~iwd~~~~~-~~~~  280 (315)
                      +|+| ++.+|++++.|+.|++||++.++.+..+.+|.+. ...+.|.+++..+++++    .|+.|++||++... ++..
T Consensus       175 a~sp-dG~lLatgs~Dg~IrIwD~rsg~~v~tl~~H~~~~~~~~~w~~~~~~ivt~G~s~s~Dr~VklWDlr~~~~p~~~  253 (493)
T PTZ00421        175 EWNL-DGSLLCTTSKDKKLNIIDPRDGTIVSSVEAHASAKSQRCLWAKRKDLIITLGCSKSQQRQIMLWDTRKMASPYST  253 (493)
T ss_pred             EEEC-CCCEEEEecCCCEEEEEECCCCcEEEEEecCCCCcceEEEEcCCCCeEEEEecCCCCCCeEEEEeCCCCCCceeE
Confidence            9998 6789999999999999999999888888888764 44677888877777654    47899999998643 3333


Q ss_pred             cccc-ccceEEEEEeeCCCEEEEEe-CCCcEEEeec
Q 021247          281 MTNH-TDQVWGVSFRPLGGRVVSVS-DDKSISLYEY  314 (315)
Q Consensus       281 ~~~~-~~~v~~~~~s~~~~~l~s~~-~d~~i~i~~~  314 (315)
                      ...+ ...+....|++++++|++++ .|++|++||+
T Consensus       254 ~~~d~~~~~~~~~~d~d~~~L~lggkgDg~Iriwdl  289 (493)
T PTZ00421        254 VDLDQSSALFIPFFDEDTNLLYIGSKGEGNIRCFEL  289 (493)
T ss_pred             eccCCCCceEEEEEcCCCCEEEEEEeCCCeEEEEEe
Confidence            3322 33566678999999998887 5999999997

>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.98  E-value=1.4e-29  Score=205.83  Aligned_cols=241  Identities=25%  Similarity=0.328  Sum_probs=206.9

Q ss_pred             hccccceEEEEEeecCCCCCcEEEEeeCCCcEEEEcCCCCcceeeccccccceEEEEeCCCC-CEEEEeeCCCeEEEEEC
Q 021247           11 NAHEESVWAVTWVPATETRPALLLTGSLDETVKLWRPDDMQLERTNTGHCLGVVSVAAHPSG-IIAASASLDSFVRVFDV   89 (315)
Q Consensus        11 ~~h~~~v~~v~~~~~~~~~~~~l~sgs~d~~v~~w~~~~~~~~~~~~~h~~~v~~~~~~~~g-~~l~s~~~d~~i~~w~~   89 (315)
                      ....+.|+++.|-.++.    +|++|...|.|++||..+...++.+.+|+.++..+.|+|++ .++++|+.|+.+++||+
T Consensus        65 srFk~~v~s~~fR~DG~----LlaaGD~sG~V~vfD~k~r~iLR~~~ah~apv~~~~f~~~d~t~l~s~sDd~v~k~~d~  140 (487)
T KOG0310|consen   65 SRFKDVVYSVDFRSDGR----LLAAGDESGHVKVFDMKSRVILRQLYAHQAPVHVTKFSPQDNTMLVSGSDDKVVKYWDL  140 (487)
T ss_pred             HhhccceeEEEeecCCe----EEEccCCcCcEEEeccccHHHHHHHhhccCceeEEEecccCCeEEEecCCCceEEEEEc
Confidence            35678999999998886    78999999999999977766788899999999999999966 67789999999999999


Q ss_pred             CCCceeEEeeCCcccEEEEEECCCCCeEEEEecCCCeEEEEecCCc-ceeeeecCCCCCCCCCCccCCCCcceEEEEECC
Q 021247           90 DTNASIATLEASPSEVWQMQFDPKGTTLAVAGGGSASVKLWDTATW-NLIATLSIPRPEGLKPTDKSSSKKFVLSVAWSP  168 (315)
Q Consensus        90 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~~d~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~  168 (315)
                      .+......+.+|.+.|.+.+++|....++++|+.||.|++||++.. ..+..++              |..+|..+.+-|
T Consensus       141 s~a~v~~~l~~htDYVR~g~~~~~~~hivvtGsYDg~vrl~DtR~~~~~v~eln--------------hg~pVe~vl~lp  206 (487)
T KOG0310|consen  141 STAYVQAELSGHTDYVRCGDISPANDHIVVTGSYDGKVRLWDTRSLTSRVVELN--------------HGCPVESVLALP  206 (487)
T ss_pred             CCcEEEEEecCCcceeEeeccccCCCeEEEecCCCceEEEEEeccCCceeEEec--------------CCCceeeEEEcC
Confidence            9988766889999999999999999989999999999999999976 4444432              445588999999


Q ss_pred             CCCEEEEecCCCcEEEEEccc-ceeeeeecCCccceEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCeeEEEeecccccEE
Q 021247          169 DGRRIACGSMDGTISVFDVTR-AKFLHHLEGHFMPVRSLVYSPVDPRVLFSASDDTHVHMYDAEGKSLVTAMSGHASWVL  247 (315)
Q Consensus       169 ~~~~l~~~s~dg~i~i~d~~~-~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~i~  247 (315)
                      .|..+++++. +.+++||+.+ ++.+..+..|...|+|+.+.. ++..|++++.|+++++||..+.+.+..+. -.++|.
T Consensus       207 sgs~iasAgG-n~vkVWDl~~G~qll~~~~~H~KtVTcL~l~s-~~~rLlS~sLD~~VKVfd~t~~Kvv~s~~-~~~pvL  283 (487)
T KOG0310|consen  207 SGSLIASAGG-NSVKVWDLTTGGQLLTSMFNHNKTVTCLRLAS-DSTRLLSGSLDRHVKVFDTTNYKVVHSWK-YPGPVL  283 (487)
T ss_pred             CCCEEEEcCC-CeEEEEEecCCceehhhhhcccceEEEEEeec-CCceEeecccccceEEEEccceEEEEeee-ccccee
Confidence            9999988754 5899999984 455666666999999999987 66899999999999999988877776654 578899


Q ss_pred             EEEEcCCCCeEEEEeCCCcEEEEec
Q 021247          248 SVDASPDGAAITTGSSDRTVKLWDL  272 (315)
Q Consensus       248 ~~~~~~~~~~l~s~~~d~~i~iwd~  272 (315)
                      +++++|+++.++.|-.||-+.+=+.
T Consensus       284 siavs~dd~t~viGmsnGlv~~rr~  308 (487)
T KOG0310|consen  284 SIAVSPDDQTVVIGMSNGLVSIRRR  308 (487)
T ss_pred             eEEecCCCceEEEecccceeeeehh
Confidence            9999999999999999998877643

>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]

Probab=99.97  E-value=3.1e-30  Score=207.91  Aligned_cols=249  Identities=20%  Similarity=0.283  Sum_probs=203.8

Q ss_pred             hccccceEEEEEeecCCCCCcEEEEeeCCCcEEEEcCCCCcc----------eeeccccccceEEEEeCCCC-CEEEEee
Q 021247           11 NAHEESVWAVTWVPATETRPALLLTGSLDETVKLWRPDDMQL----------ERTNTGHCLGVVSVAAHPSG-IIAASAS   79 (315)
Q Consensus        11 ~~h~~~v~~v~~~~~~~~~~~~l~sgs~d~~v~~w~~~~~~~----------~~~~~~h~~~v~~~~~~~~g-~~l~s~~   79 (315)
                      -.|.++|+.+..+|..+   .++++++..+.|.|||.....-          ...+.||...-..++|++.- -.+++++
T Consensus       121 i~h~gEVnRaRymPQnp---~iVAt~t~~~dv~Vfd~tk~~s~~~~~~~~~Pdl~L~gH~~eg~glsWn~~~~g~Lls~~  197 (422)
T KOG0264|consen  121 INHDGEVNRARYMPQNP---NIVATKTSSGDVYVFDYTKHPSKPKASGECRPDLRLKGHEKEGYGLSWNRQQEGTLLSGS  197 (422)
T ss_pred             ccCCccchhhhhCCCCC---cEEEecCCCCCEEEEEeccCCCcccccccCCCceEEEeecccccccccccccceeEeecc
Confidence            37999999999999654   4899999999999999754321          11467888878889998854 5888999


Q ss_pred             CCCeEEEEECCCCce-------eEEeeCCcccEEEEEECCCCCeEEEEecCCCeEEEEecCCcceeeeecCCCCCCCCCC
Q 021247           80 LDSFVRVFDVDTNAS-------IATLEASPSEVWQMQFDPKGTTLAVAGGGSASVKLWDTATWNLIATLSIPRPEGLKPT  152 (315)
Q Consensus        80 ~d~~i~~w~~~~~~~-------~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~  152 (315)
                      .|++|.+||+.....       ...+..|...|..++|+|....++.+.++|+.+.|||+|++..           ....
T Consensus       198 ~d~~i~lwdi~~~~~~~~~~~p~~~~~~h~~~VeDV~~h~~h~~lF~sv~dd~~L~iwD~R~~~~-----------~~~~  266 (422)
T KOG0264|consen  198 DDHTICLWDINAESKEDKVVDPKTIFSGHEDVVEDVAWHPLHEDLFGSVGDDGKLMIWDTRSNTS-----------KPSH  266 (422)
T ss_pred             CCCcEEEEeccccccCCccccceEEeecCCcceehhhccccchhhheeecCCCeEEEEEcCCCCC-----------CCcc
Confidence            999999999986532       3467889999999999999998999999999999999996210           0111


Q ss_pred             ccCCCCcceEEEEECCC-CCEEEEecCCCcEEEEEcccce-eeeeecCCccceEEEEEcCCCCcEEEEEeCCCeEEEEeC
Q 021247          153 DKSSSKKFVLSVAWSPD-GRRIACGSMDGTISVFDVTRAK-FLHHLEGHFMPVRSLVYSPVDPRVLFSASDDTHVHMYDA  230 (315)
Q Consensus       153 ~~~~~~~~i~~~~~~~~-~~~l~~~s~dg~i~i~d~~~~~-~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~  230 (315)
                      ....|...+.|++|+|- +..||+|+.|++|.+||+|+.+ .+..+.+|...|..+.|+|....+|++++.|+.+.+||+
T Consensus       267 ~~~ah~~~vn~~~fnp~~~~ilAT~S~D~tV~LwDlRnL~~~lh~~e~H~dev~~V~WSPh~etvLASSg~D~rl~vWDl  346 (422)
T KOG0264|consen  267 SVKAHSAEVNCVAFNPFNEFILATGSADKTVALWDLRNLNKPLHTFEGHEDEVFQVEWSPHNETVLASSGTDRRLNVWDL  346 (422)
T ss_pred             cccccCCceeEEEeCCCCCceEEeccCCCcEEEeechhcccCceeccCCCcceEEEEeCCCCCceeEecccCCcEEEEec
Confidence            22356677999999994 5677899999999999998654 578889999999999999999999999999999999997


Q ss_pred             CCC--------------eeEEEeecccccEEEEEEcCCCC-eEEEEeCCCcEEEEecC
Q 021247          231 EGK--------------SLVTAMSGHASWVLSVDASPDGA-AITTGSSDRTVKLWDLN  273 (315)
Q Consensus       231 ~~~--------------~~~~~~~~~~~~i~~~~~~~~~~-~l~s~~~d~~i~iwd~~  273 (315)
                      ..-              +++-...||...|..+.|+|... .++|.+.|+.+.||+..
T Consensus       347 s~ig~eq~~eda~dgppEllF~HgGH~~kV~DfsWnp~ePW~I~SvaeDN~LqIW~~s  404 (422)
T KOG0264|consen  347 SRIGEEQSPEDAEDGPPELLFIHGGHTAKVSDFSWNPNEPWTIASVAEDNILQIWQMA  404 (422)
T ss_pred             cccccccChhhhccCCcceeEEecCcccccccccCCCCCCeEEEEecCCceEEEeecc
Confidence            521              23445578999999999999765 57899999999999875

>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein

Probab=99.97  E-value=2.3e-28  Score=203.18  Aligned_cols=267  Identities=16%  Similarity=0.213  Sum_probs=201.2

Q ss_pred             cEEEEeeCCCcEEEEcCCCCcceeeccccccceEEEEeCCCCCEE-EEeeCCCeEEEEECCCCceeEEeeCCcccEEEEE
Q 021247           31 ALLLTGSLDETVKLWRPDDMQLERTNTGHCLGVVSVAAHPSGIIA-ASASLDSFVRVFDVDTNASIATLEASPSEVWQMQ  109 (315)
Q Consensus        31 ~~l~sgs~d~~v~~w~~~~~~~~~~~~~h~~~v~~~~~~~~g~~l-~s~~~d~~i~~w~~~~~~~~~~~~~~~~~v~~~~  109 (315)
                      .+++|++.|+.|++||..+.+....+..+. .+..+.++|+|..+ ++++.++.|++||..+++....+..+.. +..+.
T Consensus         2 ~~~~s~~~d~~v~~~d~~t~~~~~~~~~~~-~~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~-~~~~~   79 (300)
T TIGR03866         2 KAYVSNEKDNTISVIDTATLEVTRTFPVGQ-RPRGITLSKDGKLLYVCASDSDTIQVIDLATGEVIGTLPSGPD-PELFA   79 (300)
T ss_pred             cEEEEecCCCEEEEEECCCCceEEEEECCC-CCCceEECCCCCEEEEEECCCCeEEEEECCCCcEEEeccCCCC-ccEEE
Confidence            368999999999999998887777666543 46789999999866 5677899999999998877666654433 46788


Q ss_pred             ECCCCCeEEEEecCCCeEEEEecCCcceeeeecCCCCCCCCCCccCCCCcceEEEEECCCCCEEEEecCCC-cEEEEEcc
Q 021247          110 FDPKGTTLAVAGGGSASVKLWDTATWNLIATLSIPRPEGLKPTDKSSSKKFVLSVAWSPDGRRIACGSMDG-TISVFDVT  188 (315)
Q Consensus       110 ~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~s~dg-~i~i~d~~  188 (315)
                      ++|+++.+++++..++.+++||+++.+.+..+...              ..+.+++|+|+++++++++.++ .+.+||..
T Consensus        80 ~~~~g~~l~~~~~~~~~l~~~d~~~~~~~~~~~~~--------------~~~~~~~~~~dg~~l~~~~~~~~~~~~~d~~  145 (300)
T TIGR03866        80 LHPNGKILYIANEDDNLVTVIDIETRKVLAEIPVG--------------VEPEGMAVSPDGKIVVNTSETTNMAHFIDTK  145 (300)
T ss_pred             ECCCCCEEEEEcCCCCeEEEEECCCCeEEeEeeCC--------------CCcceEEECCCCCEEEEEecCCCeEEEEeCC
Confidence            99999988777778899999999887665544211              1246799999999999888765 57778998


Q ss_pred             cceeeeeecCCccceEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCeeEEEeeccc-------ccEEEEEEcCCCCeEEE-
Q 021247          189 RAKFLHHLEGHFMPVRSLVYSPVDPRVLFSASDDTHVHMYDAEGKSLVTAMSGHA-------SWVLSVDASPDGAAITT-  260 (315)
Q Consensus       189 ~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~-------~~i~~~~~~~~~~~l~s-  260 (315)
                      +++........ ..+..+.|+|++..+++++..++.|++||.++++.+..+..+.       .....++++|+++.++. 
T Consensus       146 ~~~~~~~~~~~-~~~~~~~~s~dg~~l~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~~~~~  224 (300)
T TIGR03866       146 TYEIVDNVLVD-QRPRFAEFTADGKELWVSSEIGGTVSVIDVATRKVIKKITFEIPGVHPEAVQPVGIKLTKDGKTAFVA  224 (300)
T ss_pred             CCeEEEEEEcC-CCccEEEECCCCCEEEEEcCCCCEEEEEEcCcceeeeeeeecccccccccCCccceEECCCCCEEEEE
Confidence            77765544322 2446789998544444566679999999999887766554221       12346889999987544 


Q ss_pred             EeCCCcEEEEecCccceehcccccccceEEEEEeeCCCEEEEE-eCCCcEEEeecC
Q 021247          261 GSSDRTVKLWDLNMRAAMQSMTNHTDQVWGVSFRPLGGRVVSV-SDDKSISLYEYS  315 (315)
Q Consensus       261 ~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~-~~d~~i~i~~~~  315 (315)
                      .+.++.|.+||+++++..... .+...+++++|+|+|++|+++ +.+++|++||..
T Consensus       225 ~~~~~~i~v~d~~~~~~~~~~-~~~~~~~~~~~~~~g~~l~~~~~~~~~i~v~d~~  279 (300)
T TIGR03866       225 LGPANRVAVVDAKTYEVLDYL-LVGQRVWQLAFTPDEKYLLTTNGVSNDVSVIDVA  279 (300)
T ss_pred             cCCCCeEEEEECCCCcEEEEE-EeCCCcceEEECCCCCEEEEEcCCCCeEEEEECC
Confidence            455778999999887766544 244578999999999999876 568999999963

Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.

>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]

Probab=99.97  E-value=1.6e-29  Score=191.06  Aligned_cols=233  Identities=23%  Similarity=0.305  Sum_probs=205.4

Q ss_pred             ccccccceEEEEeCCCCCEEEEeeCCCeEEEEECCCCceeEEeeCCcccEEEEEECCCCCeEEEEecCCCeEEEEecCCc
Q 021247           56 NTGHCLGVVSVAAHPSGIIAASASLDSFVRVFDVDTNASIATLEASPSEVWQMQFDPKGTTLAVAGGGSASVKLWDTATW  135 (315)
Q Consensus        56 ~~~h~~~v~~~~~~~~g~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~~d~~~~  135 (315)
                      +.||..+++.+.++.+|.+|.+++.|.+.-||-..+++.+-++++|.+.||++..+.+... +++|+.|.++++||..++
T Consensus         6 l~GHERplTqiKyN~eGDLlFscaKD~~~~vw~s~nGerlGty~GHtGavW~~Did~~s~~-liTGSAD~t~kLWDv~tG   84 (327)
T KOG0643|consen    6 LQGHERPLTQIKYNREGDLLFSCAKDSTPTVWYSLNGERLGTYDGHTGAVWCCDIDWDSKH-LITGSADQTAKLWDVETG   84 (327)
T ss_pred             cccCccccceEEecCCCcEEEEecCCCCceEEEecCCceeeeecCCCceEEEEEecCCcce-eeeccccceeEEEEcCCC
Confidence            5689999999999999999999999999999999999999999999999999999988775 579999999999999999


Q ss_pred             ceeeeecCCCCCCCCCCccCCCCcceEEEEECCCCCEEEEecC-----CCcEEEEEcc-------cceeeeeecCCccce
Q 021247          136 NLIATLSIPRPEGLKPTDKSSSKKFVLSVAWSPDGRRIACGSM-----DGTISVFDVT-------RAKFLHHLEGHFMPV  203 (315)
Q Consensus       136 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~s~-----dg~i~i~d~~-------~~~~~~~~~~~~~~v  203 (315)
                      +.+..+..+.+              |..+.|+++|++++.++.     .+.|.++|++       ...+...+..+...+
T Consensus        85 k~la~~k~~~~--------------Vk~~~F~~~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~t~~ski  150 (327)
T KOG0643|consen   85 KQLATWKTNSP--------------VKRVDFSFGGNLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKIPTPDSKI  150 (327)
T ss_pred             cEEEEeecCCe--------------eEEEeeccCCcEEEEEehhhcCcceEEEEEEccCChhhhcccCceEEecCCccce
Confidence            99998865433              889999999999887754     4579999997       344566777788899


Q ss_pred             EEEEEcCCCCcEEEEEeCCCeEEEEeCCCC-eeEEEeecccccEEEEEEcCCCCeEEEEeCCCcEEEEecCccceehccc
Q 021247          204 RSLVYSPVDPRVLFSASDDTHVHMYDAEGK-SLVTAMSGHASWVLSVDASPDGAAITTGSSDRTVKLWDLNMRAAMQSMT  282 (315)
Q Consensus       204 ~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~-~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~  282 (315)
                      +.+-|.| -++.|++|..||.|.+||.+++ +.+.....|...|+++.++|+..+++|++.|.+-++||..+-..++++.
T Consensus       151 t~a~Wg~-l~~~ii~Ghe~G~is~~da~~g~~~v~s~~~h~~~Ind~q~s~d~T~FiT~s~Dttakl~D~~tl~v~Kty~  229 (327)
T KOG0643|consen  151 TSALWGP-LGETIIAGHEDGSISIYDARTGKELVDSDEEHSSKINDLQFSRDRTYFITGSKDTTAKLVDVRTLEVLKTYT  229 (327)
T ss_pred             eeeeecc-cCCEEEEecCCCcEEEEEcccCceeeechhhhccccccccccCCcceEEecccCccceeeeccceeeEEEee
Confidence            9999998 5679999999999999999986 4555567899999999999999999999999999999999988888876


Q ss_pred             ccccceEEEEEeeCCCEEEEEeC
Q 021247          283 NHTDQVWGVSFRPLGGRVVSVSD  305 (315)
Q Consensus       283 ~~~~~v~~~~~s~~~~~l~s~~~  305 (315)
                      . ..+|++.+++|...+++.+|.
T Consensus       230 t-e~PvN~aaisP~~d~VilgGG  251 (327)
T KOG0643|consen  230 T-ERPVNTAAISPLLDHVILGGG  251 (327)
T ss_pred             e-cccccceecccccceEEecCC
Confidence            4 569999999998877776554

>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]

Probab=99.97  E-value=9.4e-31  Score=195.96  Aligned_cols=244  Identities=21%  Similarity=0.321  Sum_probs=205.7

Q ss_pred             hccccceEEEEEeecCCCCCcEEEEeeCCCcEEEEcCCCCcceeeccccccceEEEEeCCCCCEEEEeeCCCeEEEEECC
Q 021247           11 NAHEESVWAVTWVPATETRPALLLTGSLDETVKLWRPDDMQLERTNTGHCLGVVSVAAHPSGIIAASASLDSFVRVFDVD   90 (315)
Q Consensus        11 ~~h~~~v~~v~~~~~~~~~~~~l~sgs~d~~v~~w~~~~~~~~~~~~~h~~~v~~~~~~~~g~~l~s~~~d~~i~~w~~~   90 (315)
                      .+|...||........    ..-++++.|-+-++||.-++..+..+ .|..-|.+++|+.|.++|++|+.++.+|++|++
T Consensus        56 eghkgavw~~~l~~na----~~aasaaadftakvw~a~tgdelhsf-~hkhivk~~af~~ds~~lltgg~ekllrvfdln  130 (334)
T KOG0278|consen   56 EGHKGAVWSATLNKNA----TRAASAAADFTAKVWDAVTGDELHSF-EHKHIVKAVAFSQDSNYLLTGGQEKLLRVFDLN  130 (334)
T ss_pred             eccCcceeeeecCchh----hhhhhhcccchhhhhhhhhhhhhhhh-hhhheeeeEEecccchhhhccchHHHhhhhhcc
Confidence            5888999888764322    24688899999999998777665554 477789999999999999999999999999998


Q ss_pred             CCc-eeEEeeCCcccEEEEEECCCCCeEEEEecCCCeEEEEecCCcceeeeecCCCCCCCCCCccCCCCcceEEEEECCC
Q 021247           91 TNA-SIATLEASPSEVWQMQFDPKGTTLAVAGGGSASVKLWDTATWNLIATLSIPRPEGLKPTDKSSSKKFVLSVAWSPD  169 (315)
Q Consensus        91 ~~~-~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~  169 (315)
                      ..+ ....+..|++.|..+-|....+.++ +..+|++||+||.++++.+.++..+.+              ++++.++++
T Consensus       131 ~p~App~E~~ghtg~Ir~v~wc~eD~~iL-SSadd~tVRLWD~rTgt~v~sL~~~s~--------------VtSlEvs~d  195 (334)
T KOG0278|consen  131 RPKAPPKEISGHTGGIRTVLWCHEDKCIL-SSADDKTVRLWDHRTGTEVQSLEFNSP--------------VTSLEVSQD  195 (334)
T ss_pred             CCCCCchhhcCCCCcceeEEEeccCceEE-eeccCCceEEEEeccCcEEEEEecCCC--------------CcceeeccC
Confidence            765 4667889999999999998877765 558999999999999999998876543              789999999


Q ss_pred             CCEEEEecCCCcEEEEEcccceeeeeecCCccceEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCeeEEEe-ecccccEEE
Q 021247          170 GRRIACGSMDGTISVFDVTRAKFLHHLEGHFMPVRSLVYSPVDPRVLFSASDDTHVHMYDAEGKSLVTAM-SGHASWVLS  248 (315)
Q Consensus       170 ~~~l~~~s~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~-~~~~~~i~~  248 (315)
                      |++|..+ ..+.|++||..+...+..... ...|.+...+| +...+++|+.|..++.||..++..+..+ .+|.++|.+
T Consensus       196 G~ilTia-~gssV~Fwdaksf~~lKs~k~-P~nV~SASL~P-~k~~fVaGged~~~~kfDy~TgeEi~~~nkgh~gpVhc  272 (334)
T KOG0278|consen  196 GRILTIA-YGSSVKFWDAKSFGLLKSYKM-PCNVESASLHP-KKEFFVAGGEDFKVYKFDYNTGEEIGSYNKGHFGPVHC  272 (334)
T ss_pred             CCEEEEe-cCceeEEeccccccceeeccC-ccccccccccC-CCceEEecCcceEEEEEeccCCceeeecccCCCCceEE
Confidence            9887665 557899999988877766553 34677888898 5589999999999999999998877775 899999999


Q ss_pred             EEEcCCCCeEEEEeCCCcEEEEecCccce
Q 021247          249 VDASPDGAAITTGSSDRTVKLWDLNMRAA  277 (315)
Q Consensus       249 ~~~~~~~~~l~s~~~d~~i~iwd~~~~~~  277 (315)
                      +.|+|+|...++|+.||+|++|....++.
T Consensus       273 VrFSPdGE~yAsGSEDGTirlWQt~~~~~  301 (334)
T KOG0278|consen  273 VRFSPDGELYASGSEDGTIRLWQTTPGKT  301 (334)
T ss_pred             EEECCCCceeeccCCCceEEEEEecCCCc
Confidence            99999999999999999999999876543

>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]

Probab=99.97  E-value=7.3e-30  Score=205.74  Aligned_cols=252  Identities=22%  Similarity=0.333  Sum_probs=203.2

Q ss_pred             ccccceEEEEeCCCC-CEEEEeeCCCeEEEEECCCCce----------eEEeeCCcccEEEEEECCCCCeEEEEecCCCe
Q 021247           58 GHCLGVVSVAAHPSG-IIAASASLDSFVRVFDVDTNAS----------IATLEASPSEVWQMQFDPKGTTLAVAGGGSAS  126 (315)
Q Consensus        58 ~h~~~v~~~~~~~~g-~~l~s~~~d~~i~~w~~~~~~~----------~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~  126 (315)
                      .|.+.|+.+..-|+. .++++.+..+.+.|||..+...          -..+.+|..+-.+++|++.....+++++.|++
T Consensus       122 ~h~gEVnRaRymPQnp~iVAt~t~~~dv~Vfd~tk~~s~~~~~~~~~Pdl~L~gH~~eg~glsWn~~~~g~Lls~~~d~~  201 (422)
T KOG0264|consen  122 NHDGEVNRARYMPQNPNIVATKTSSGDVYVFDYTKHPSKPKASGECRPDLRLKGHEKEGYGLSWNRQQEGTLLSGSDDHT  201 (422)
T ss_pred             cCCccchhhhhCCCCCcEEEecCCCCCEEEEEeccCCCcccccccCCCceEEEeecccccccccccccceeEeeccCCCc
Confidence            467778888877876 5677788889999999875422          12567787778899999998888899999999


Q ss_pred             EEEEecCCcceeeeecCCCCCCCCCCccCCCCcceEEEEECCC-CCEEEEecCCCcEEEEEcc--cceeeeeecCCccce
Q 021247          127 VKLWDTATWNLIATLSIPRPEGLKPTDKSSSKKFVLSVAWSPD-GRRIACGSMDGTISVFDVT--RAKFLHHLEGHFMPV  203 (315)
Q Consensus       127 i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-~~~l~~~s~dg~i~i~d~~--~~~~~~~~~~~~~~v  203 (315)
                      |.+||+........      ..........|...|..++|++- ...|++++.|+.+.|||+|  +.+......+|..++
T Consensus       202 i~lwdi~~~~~~~~------~~~p~~~~~~h~~~VeDV~~h~~h~~lF~sv~dd~~L~iwD~R~~~~~~~~~~~ah~~~v  275 (422)
T KOG0264|consen  202 ICLWDINAESKEDK------VVDPKTIFSGHEDVVEDVAWHPLHEDLFGSVGDDGKLMIWDTRSNTSKPSHSVKAHSAEV  275 (422)
T ss_pred             EEEEeccccccCCc------cccceEEeecCCcceehhhccccchhhheeecCCCeEEEEEcCCCCCCCcccccccCCce
Confidence            99999975332100      01111223567788999999994 5678899999999999999  556667778999999


Q ss_pred             EEEEEcCCCCcEEEEEeCCCeEEEEeCCCC-eeEEEeecccccEEEEEEcCC-CCeEEEEeCCCcEEEEecCccce----
Q 021247          204 RSLVYSPVDPRVLFSASDDTHVHMYDAEGK-SLVTAMSGHASWVLSVDASPD-GAAITTGSSDRTVKLWDLNMRAA----  277 (315)
Q Consensus       204 ~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~-~~~~~~~~~~~~i~~~~~~~~-~~~l~s~~~d~~i~iwd~~~~~~----  277 (315)
                      .+++|+|.+..+|++|+.|++|.+||++.. ..+..+.+|...|.+|.|+|+ ..+|++++.|+.+.+||+..-..    
T Consensus       276 n~~~fnp~~~~ilAT~S~D~tV~LwDlRnL~~~lh~~e~H~dev~~V~WSPh~etvLASSg~D~rl~vWDls~ig~eq~~  355 (422)
T KOG0264|consen  276 NCVAFNPFNEFILATGSADKTVALWDLRNLNKPLHTFEGHEDEVFQVEWSPHNETVLASSGTDRRLNVWDLSRIGEEQSP  355 (422)
T ss_pred             eEEEeCCCCCceEEeccCCCcEEEeechhcccCceeccCCCcceEEEEeCCCCCceeEecccCCcEEEEeccccccccCh
Confidence            999999999999999999999999999864 466788999999999999996 45889999999999999975221    


Q ss_pred             ----------ehcccccccceEEEEEeeCCCE-EEEEeCCCcEEEeecC
Q 021247          278 ----------MQSMTNHTDQVWGVSFRPLGGR-VVSVSDDKSISLYEYS  315 (315)
Q Consensus       278 ----------~~~~~~~~~~v~~~~~s~~~~~-l~s~~~d~~i~i~~~~  315 (315)
                                +-...+|...|....|+|+-.+ |+|+++|+.++||++.
T Consensus       356 eda~dgppEllF~HgGH~~kV~DfsWnp~ePW~I~SvaeDN~LqIW~~s  404 (422)
T KOG0264|consen  356 EDAEDGPPELLFIHGGHTAKVSDFSWNPNEPWTIASVAEDNILQIWQMA  404 (422)
T ss_pred             hhhccCCcceeEEecCcccccccccCCCCCCeEEEEecCCceEEEeecc
Confidence                      2234578899999999999876 5799999999999863

>PTZ00420 coronin; Provisional

Probab=99.97  E-value=1.7e-28  Score=213.86  Aligned_cols=229  Identities=16%  Similarity=0.252  Sum_probs=177.8

Q ss_pred             eeCCCeEEEEECCCCceeEEeeCCcccEEEEEECCCCCeEEEEecCCCeEEEEecCCcce-eeeecCCCCCCCCCCccCC
Q 021247           78 ASLDSFVRVFDVDTNASIATLEASPSEVWQMQFDPKGTTLAVAGGGSASVKLWDTATWNL-IATLSIPRPEGLKPTDKSS  156 (315)
Q Consensus        78 ~~~d~~i~~w~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~~d~~~~~~-~~~~~~~~~~~~~~~~~~~  156 (315)
                      |+.++.+++|+......+..+..|..+|.+++|+|....++++|+.|++|++||+.+... ...+.      ........
T Consensus        50 GG~~gvI~L~~~~r~~~v~~L~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~------~p~~~L~g  123 (568)
T PTZ00420         50 GGLIGAIRLENQMRKPPVIKLKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIK------DPQCILKG  123 (568)
T ss_pred             CCceeEEEeeecCCCceEEEEcCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccccc------cceEEeec
Confidence            667889999998887788889999999999999998555778999999999999975321 11100      00011234


Q ss_pred             CCcceEEEEECCCCCEE-EEecCCCcEEEEEcccceeeeeecCCccceEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCee
Q 021247          157 SKKFVLSVAWSPDGRRI-ACGSMDGTISVFDVTRAKFLHHLEGHFMPVRSLVYSPVDPRVLFSASDDTHVHMYDAEGKSL  235 (315)
Q Consensus       157 ~~~~i~~~~~~~~~~~l-~~~s~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~  235 (315)
                      |...|.+++|+|++..+ ++++.|+.|++||+++++....+. |...|.+++|+| ++.+|++++.|+.|++||+++++.
T Consensus       124 H~~~V~sVaf~P~g~~iLaSgS~DgtIrIWDl~tg~~~~~i~-~~~~V~Slswsp-dG~lLat~s~D~~IrIwD~Rsg~~  201 (568)
T PTZ00420        124 HKKKISIIDWNPMNYYIMCSSGFDSFVNIWDIENEKRAFQIN-MPKKLSSLKWNI-KGNLLSGTCVGKHMHIIDPRKQEI  201 (568)
T ss_pred             CCCcEEEEEECCCCCeEEEEEeCCCeEEEEECCCCcEEEEEe-cCCcEEEEEECC-CCCEEEEEecCCEEEEEECCCCcE
Confidence            66779999999988764 688999999999999888776665 557899999998 677899999999999999999998


Q ss_pred             EEEeecccccEEE-----EEEcCCCCeEEEEeCCC----cEEEEecCc-cceehcccc--cccceEEEEEeeCCCEEEEE
Q 021247          236 VTAMSGHASWVLS-----VDASPDGAAITTGSSDR----TVKLWDLNM-RAAMQSMTN--HTDQVWGVSFRPLGGRVVSV  303 (315)
Q Consensus       236 ~~~~~~~~~~i~~-----~~~~~~~~~l~s~~~d~----~i~iwd~~~-~~~~~~~~~--~~~~v~~~~~s~~~~~l~s~  303 (315)
                      +..+.+|.+.+..     ..|++++.++++++.|+    .|+|||++. .+++..+..  +...+......++|.++++|
T Consensus       202 i~tl~gH~g~~~s~~v~~~~fs~d~~~IlTtG~d~~~~R~VkLWDlr~~~~pl~~~~ld~~~~~L~p~~D~~tg~l~lsG  281 (568)
T PTZ00420        202 ASSFHIHDGGKNTKNIWIDGLGGDDNYILSTGFSKNNMREMKLWDLKNTTSALVTMSIDNASAPLIPHYDESTGLIYLIG  281 (568)
T ss_pred             EEEEecccCCceeEEEEeeeEcCCCCEEEEEEcCCCCccEEEEEECCCCCCceEEEEecCCccceEEeeeCCCCCEEEEE
Confidence            8888899876533     23468888999988774    799999985 455554433  23344444445668889999


Q ss_pred             eCCCcEEEeec
Q 021247          304 SDDKSISLYEY  314 (315)
Q Consensus       304 ~~d~~i~i~~~  314 (315)
                      +.|++|++|++
T Consensus       282 kGD~tIr~~e~  292 (568)
T PTZ00420        282 KGDGNCRYYQH  292 (568)
T ss_pred             ECCCeEEEEEc
Confidence            99999999997

>KOG1408 consensus WD40 repeat protein [Function unknown]

Probab=99.97  E-value=2.9e-29  Score=212.77  Aligned_cols=296  Identities=20%  Similarity=0.300  Sum_probs=233.9

Q ss_pred             hhhhhccccceEEEEEeec-------CCCCCcEEEEeeCCCcEEEEcCCC---Ccce----------eec----------
Q 021247            7 KSVENAHEESVWAVTWVPA-------TETRPALLLTGSLDETVKLWRPDD---MQLE----------RTN----------   56 (315)
Q Consensus         7 ~~~~~~h~~~v~~v~~~~~-------~~~~~~~l~sgs~d~~v~~w~~~~---~~~~----------~~~----------   56 (315)
                      ...+.-|..-||.|.-.|.       ..-.+..|+|+|.|++|++|+.+.   ++..          +..          
T Consensus       362 ~~s~lyHS~ciW~Ve~~p~nv~~~~~aclp~~cF~TCSsD~TIRlW~l~~ctnn~vyrRNils~~l~ki~y~d~~~q~~~  441 (1080)
T KOG1408|consen  362 CSSMLYHSACIWDVENLPCNVHSPTAACLPRGCFTTCSSDGTIRLWDLAFCTNNQVYRRNILSANLSKIPYEDSTQQIMH  441 (1080)
T ss_pred             eeeeeeccceeeeeccccccccCcccccCCccceeEecCCCcEEEeecccccccceeecccchhhhhcCccccCchhhhh
Confidence            3445678889999987772       122345799999999999998753   1110          000          


Q ss_pred             --------------cccccceEEEEeCCCCCEEEEeeCCCeEEEEECCCCceeEEeeCCcccEEEEEECCC--CCeEEEE
Q 021247           57 --------------TGHCLGVVSVAAHPSGIIAASASLDSFVRVFDVDTNASIATLEASPSEVWQMQFDPK--GTTLAVA  120 (315)
Q Consensus        57 --------------~~h~~~v~~~~~~~~g~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~v~~~~~~~~--~~~~~~~  120 (315)
                                    -+...++.+++++|+|+.|++|..-|.+|++++...+....++.|..+|.++.|+.-  ++.++++
T Consensus       442 d~~~~~fdka~~s~~d~r~G~R~~~vSp~gqhLAsGDr~GnlrVy~Lq~l~~~~~~eAHesEilcLeyS~p~~~~kLLAS  521 (1080)
T KOG1408|consen  442 DASAGIFDKALVSTCDSRFGFRALAVSPDGQHLASGDRGGNLRVYDLQELEYTCFMEAHESEILCLEYSFPVLTNKLLAS  521 (1080)
T ss_pred             hccCCcccccchhhcCcccceEEEEECCCcceecccCccCceEEEEehhhhhhhheecccceeEEEeecCchhhhHhhhh
Confidence                          012347899999999999999999999999999998888899999999999999743  4567889


Q ss_pred             ecCCCeEEEEecCCcceeeeecCCCCCCCCCCccCCCCcceEEEEECCCC--CEEEEecCCCcEEEEEccc---ceee--
Q 021247          121 GGGSASVKLWDTATWNLIATLSIPRPEGLKPTDKSSSKKFVLSVAWSPDG--RRIACGSMDGTISVFDVTR---AKFL--  193 (315)
Q Consensus       121 ~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~--~~l~~~s~dg~i~i~d~~~---~~~~--  193 (315)
                      ++.|.-|.+||....-.+            ......|...|+++.|...|  ...++++.|..|.+-..+.   ++..  
T Consensus       522 asrdRlIHV~Dv~rny~l------------~qtld~HSssITsvKFa~~gln~~MiscGADksimFr~~qk~~~g~~f~r  589 (1080)
T KOG1408|consen  522 ASRDRLIHVYDVKRNYDL------------VQTLDGHSSSITSVKFACNGLNRKMISCGADKSIMFRVNQKASSGRLFPR  589 (1080)
T ss_pred             ccCCceEEEEecccccch------------hhhhcccccceeEEEEeecCCceEEEeccCchhhheehhccccCceeccc
Confidence            999999999998642111            11233566779999998876  5778888887765433221   2111  


Q ss_pred             eeecCCccceEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCeeEEEee---cccccEEEEEEcCCCCeEEEEeCCCcEEEE
Q 021247          194 HHLEGHFMPVRSLVYSPVDPRVLFSASDDTHVHMYDAEGKSLVTAMS---GHASWVLSVDASPDGAAITTGSSDRTVKLW  270 (315)
Q Consensus       194 ~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~---~~~~~i~~~~~~~~~~~l~s~~~d~~i~iw  270 (315)
                      .+.......+.+++..| ...++++++.|+.|+|||++.+++++.+.   +|.+....+..+|.|-++++.+.|.++.++
T Consensus       590 ~t~t~~ktTlYDm~Vdp-~~k~v~t~cQDrnirif~i~sgKq~k~FKgs~~~eG~lIKv~lDPSgiY~atScsdktl~~~  668 (1080)
T KOG1408|consen  590 HTQTLSKTTLYDMAVDP-TSKLVVTVCQDRNIRIFDIESGKQVKSFKGSRDHEGDLIKVILDPSGIYLATSCSDKTLCFV  668 (1080)
T ss_pred             cccccccceEEEeeeCC-CcceEEEEecccceEEEeccccceeeeecccccCCCceEEEEECCCccEEEEeecCCceEEE
Confidence            11111234678899988 67799999999999999999998888765   577888899999999999999999999999


Q ss_pred             ecCccceehcccccccceEEEEEeeCCCEEEEEeCCCcEEEeecC
Q 021247          271 DLNMRAAMQSMTNHTDQVWGVSFRPLGGRVVSVSDDKSISLYEYS  315 (315)
Q Consensus       271 d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~i~i~~~~  315 (315)
                      |+.+++++.++.+|++.|+.+.|.+|=++|++++.||.|-||.++
T Consensus       669 Df~sgEcvA~m~GHsE~VTG~kF~nDCkHlISvsgDgCIFvW~lp  713 (1080)
T KOG1408|consen  669 DFVSGECVAQMTGHSEAVTGVKFLNDCKHLISVSGDGCIFVWKLP  713 (1080)
T ss_pred             EeccchhhhhhcCcchheeeeeecccchhheeecCCceEEEEECc
Confidence            999999999999999999999999999999999999999999874

>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]

Probab=99.97  E-value=3.7e-29  Score=220.98  Aligned_cols=255  Identities=24%  Similarity=0.408  Sum_probs=209.6

Q ss_pred             hhhccccceEEEEEeecCCCCCcEEEEeeCCCcEEEEcCCC------------------CcceeeccccccceEEEEeCC
Q 021247            9 VENAHEESVWAVTWVPATETRPALLLTGSLDETVKLWRPDD------------------MQLERTNTGHCLGVVSVAAHP   70 (315)
Q Consensus         9 ~~~~h~~~v~~v~~~~~~~~~~~~l~sgs~d~~v~~w~~~~------------------~~~~~~~~~h~~~v~~~~~~~   70 (315)
                      .+..|+..|+||.|+|++.    +||+||.|+.|.+|....                  ++....+.+|...|..+.|+|
T Consensus        64 ~m~~h~~sv~CVR~S~dG~----~lAsGSDD~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp  139 (942)
T KOG0973|consen   64 TMDDHDGSVNCVRFSPDGS----YLASGSDDRLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSP  139 (942)
T ss_pred             eeccccCceeEEEECCCCC----eEeeccCcceEEEeeecccCCcccccccccccccceeeEEEEEecCCCccceeccCC
Confidence            3578999999999999987    799999999999998652                  123445678999999999999


Q ss_pred             CCCEEEEeeCCCeEEEEECCCCceeEEeeCCcccEEEEEECCCCCeEEEEecCCCeEEEEecCCcceeeeecCCCCCCCC
Q 021247           71 SGIIAASASLDSFVRVFDVDTNASIATLEASPSEVWQMQFDPKGTTLAVAGGGSASVKLWDTATWNLIATLSIPRPEGLK  150 (315)
Q Consensus        71 ~g~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~  150 (315)
                      ++.++++++.|++|.+||..+...+..++.|...|-.+.|+|-|+++ ++-++|++|++|++..+...+.++-|-.    
T Consensus       140 ~~~~lvS~s~DnsViiwn~~tF~~~~vl~~H~s~VKGvs~DP~Gky~-ASqsdDrtikvwrt~dw~i~k~It~pf~----  214 (942)
T KOG0973|consen  140 DDSLLVSVSLDNSVIIWNAKTFELLKVLRGHQSLVKGVSWDPIGKYF-ASQSDDRTLKVWRTSDWGIEKSITKPFE----  214 (942)
T ss_pred             CccEEEEecccceEEEEccccceeeeeeecccccccceEECCccCee-eeecCCceEEEEEcccceeeEeeccchh----
Confidence            99999999999999999999999999999999999999999999976 5678999999999887766666643321    


Q ss_pred             CCccCCCCcceEEEEECCCCCEEEEec--C--CCcEEEEEcccceeeeeecCCccceEEEEEcCC----CCc--------
Q 021247          151 PTDKSSSKKFVLSVAWSPDGRRIACGS--M--DGTISVFDVTRAKFLHHLEGHFMPVRSLVYSPV----DPR--------  214 (315)
Q Consensus       151 ~~~~~~~~~~i~~~~~~~~~~~l~~~s--~--dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~----~~~--------  214 (315)
                         ......+++.+.|+|||++|++..  +  -..+.|.+..+-+.-..+-+|..++.++.|+|.    ...        
T Consensus       215 ---~~~~~T~f~RlSWSPDG~~las~nA~n~~~~~~~IieR~tWk~~~~LvGH~~p~evvrFnP~lfe~~~~ng~~~~~~  291 (942)
T KOG0973|consen  215 ---ESPLTTFFLRLSWSPDGHHLASPNAVNGGKSTIAIIERGTWKVDKDLVGHSAPVEVVRFNPKLFERNNKNGTSTQPN  291 (942)
T ss_pred             ---hCCCcceeeecccCCCcCeecchhhccCCcceeEEEecCCceeeeeeecCCCceEEEEeChHHhccccccCCccCCC
Confidence               223345688999999999999863  2  235888887777777889999999999999971    111        


Q ss_pred             ----EEEEEeCCCeEEEEeCCCCeeEEEe-ecccccEEEEEEcCCCCeEEEEeCCCcEEEEecCcc
Q 021247          215 ----VLFSASDDTHVHMYDAEGKSLVTAM-SGHASWVLSVDASPDGAAITTGSSDRTVKLWDLNMR  275 (315)
Q Consensus       215 ----~l~s~~~d~~i~~wd~~~~~~~~~~-~~~~~~i~~~~~~~~~~~l~s~~~d~~i~iwd~~~~  275 (315)
                          .+++|+.|++|-||.....+.+... .-....|.+++|+|||..|+.++.||+|.++.+...
T Consensus       292 ~~y~i~AvgSqDrSlSVW~T~~~RPl~vi~~lf~~SI~DmsWspdG~~LfacS~DGtV~~i~Fee~  357 (942)
T KOG0973|consen  292 CYYCIAAVGSQDRSLSVWNTALPRPLFVIHNLFNKSIVDMSWSPDGFSLFACSLDGTVALIHFEEK  357 (942)
T ss_pred             cceEEEEEecCCccEEEEecCCCCchhhhhhhhcCceeeeeEcCCCCeEEEEecCCeEEEEEcchH
Confidence                6789999999999998654443222 223567999999999999999999999999998753

>KOG0294 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.97  E-value=3.4e-28  Score=187.84  Aligned_cols=242  Identities=17%  Similarity=0.335  Sum_probs=195.2

Q ss_pred             eeccccccceEEEEeCCCCCEEEEeeCCCeEEEEECCCCceeEEeeCCcccEEEEEECCCCC-eEEEEecCCCeEEEEec
Q 021247           54 RTNTGHCLGVVSVAAHPSGIIAASASLDSFVRVFDVDTNASIATLEASPSEVWQMQFDPKGT-TLAVAGGGSASVKLWDT  132 (315)
Q Consensus        54 ~~~~~h~~~v~~~~~~~~g~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~~~~~~~~d~~i~~~d~  132 (315)
                      ..+..|.++++++++  +|.++++|+.|.+|++||+.....+..+-.|.+.|+++.|.+.-. .-+++|++||.|.+|+.
T Consensus        37 F~~~aH~~sitavAV--s~~~~aSGssDetI~IYDm~k~~qlg~ll~HagsitaL~F~~~~S~shLlS~sdDG~i~iw~~  114 (362)
T KOG0294|consen   37 FAFSAHAGSITALAV--SGPYVASGSSDETIHIYDMRKRKQLGILLSHAGSITALKFYPPLSKSHLLSGSDDGHIIIWRV  114 (362)
T ss_pred             ccccccccceeEEEe--cceeEeccCCCCcEEEEeccchhhhcceeccccceEEEEecCCcchhheeeecCCCcEEEEEc
Confidence            345789999999998  678999999999999999999988888888999999999987642 23568999999999999


Q ss_pred             CCcceeeeecCCCCCCCCCCccCCCCcceEEEEECCCCCEEEEecCCCcEEEEEcccceeeeeecCCccceEEEEEcCCC
Q 021247          133 ATWNLIATLSIPRPEGLKPTDKSSSKKFVLSVAWSPDGRRIACGSMDGTISVFDVTRAKFLHHLEGHFMPVRSLVYSPVD  212 (315)
Q Consensus       133 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~s~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~  212 (315)
                      ..++++.++.             .|+..|+.++.+|.+++.++.+.|+.+++|++.+++.-..+.-.+ ....+.|+|. 
T Consensus       115 ~~W~~~~slK-------------~H~~~Vt~lsiHPS~KLALsVg~D~~lr~WNLV~Gr~a~v~~L~~-~at~v~w~~~-  179 (362)
T KOG0294|consen  115 GSWELLKSLK-------------AHKGQVTDLSIHPSGKLALSVGGDQVLRTWNLVRGRVAFVLNLKN-KATLVSWSPQ-  179 (362)
T ss_pred             CCeEEeeeec-------------ccccccceeEecCCCceEEEEcCCceeeeehhhcCccceeeccCC-cceeeEEcCC-
Confidence            9988877663             355569999999999999999999999999998888655444322 2244899984 


Q ss_pred             CcEEEEEeCCCeEEEEeCCCCeeEEEeecccccEEEEEEcCCCCeEEEEeCCCcEEEEecCccceehcccccccceEEEE
Q 021247          213 PRVLFSASDDTHVHMYDAEGKSLVTAMSGHASWVLSVDASPDGAAITTGSSDRTVKLWDLNMRAAMQSMTNHTDQVWGVS  292 (315)
Q Consensus       213 ~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~  292 (315)
                      +.+++.++.+ .|-+|.+....+...+... ..+.++.|. ++..|++|+.|+.|++||.+...++..+.+|...|-++.
T Consensus       180 Gd~F~v~~~~-~i~i~q~d~A~v~~~i~~~-~r~l~~~~l-~~~~L~vG~d~~~i~~~D~ds~~~~~~~~AH~~RVK~i~  256 (362)
T KOG0294|consen  180 GDHFVVSGRN-KIDIYQLDNASVFREIENP-KRILCATFL-DGSELLVGGDNEWISLKDTDSDTPLTEFLAHENRVKDIA  256 (362)
T ss_pred             CCEEEEEecc-EEEEEecccHhHhhhhhcc-ccceeeeec-CCceEEEecCCceEEEeccCCCccceeeecchhheeeeE
Confidence            5555555554 5889988776655544322 446666665 456899999999999999999888888999999999987


Q ss_pred             E--eeCCCEEEEEeCCCcEEEeecC
Q 021247          293 F--RPLGGRVVSVSDDKSISLYEYS  315 (315)
Q Consensus       293 ~--s~~~~~l~s~~~d~~i~i~~~~  315 (315)
                      +  .|.+.+|+++|.||.|++||.+
T Consensus       257 ~~~~~~~~~lvTaSSDG~I~vWd~~  281 (362)
T KOG0294|consen  257 SYTNPEHEYLVTASSDGFIKVWDID  281 (362)
T ss_pred             EEecCCceEEEEeccCceEEEEEcc
Confidence            4  3567899999999999999974

>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.97  E-value=3.5e-30  Score=202.23  Aligned_cols=239  Identities=22%  Similarity=0.317  Sum_probs=201.7

Q ss_pred             eccccccceEEEEeCCCC-CEEEEeeCCCeEEEEECCCCceeEEeeCCcccEEEEEECCCCCeEEEEecCCCeEEEEecC
Q 021247           55 TNTGHCLGVVSVAAHPSG-IIAASASLDSFVRVFDVDTNASIATLEASPSEVWQMQFDPKGTTLAVAGGGSASVKLWDTA  133 (315)
Q Consensus        55 ~~~~h~~~v~~~~~~~~g-~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~~d~~  133 (315)
                      .+.||.++|.+++-+|.- ..+++|+.||.|++||+....++.+++.|.+.|..++++.  . .+++++.|.+|+.|-+.
T Consensus        61 ~L~gHrdGV~~lakhp~~ls~~aSGs~DG~VkiWnlsqR~~~~~f~AH~G~V~Gi~v~~--~-~~~tvgdDKtvK~wk~~  137 (433)
T KOG0268|consen   61 SLDGHRDGVSCLAKHPNKLSTVASGSCDGEVKIWNLSQRECIRTFKAHEGLVRGICVTQ--T-SFFTVGDDKTVKQWKID  137 (433)
T ss_pred             hccccccccchhhcCcchhhhhhccccCceEEEEehhhhhhhheeecccCceeeEEecc--c-ceEEecCCcceeeeecc
Confidence            347999999999999987 7889999999999999999999999999999999999976  2 34678899999999875


Q ss_pred             CcceeeeecCCCCCCCCCCccCCCCcceEEEEECCCCCEEEEecCCCcEEEEEcccceeeeeecCCccceEEEEEcCCCC
Q 021247          134 TWNLIATLSIPRPEGLKPTDKSSSKKFVLSVAWSPDGRRIACGSMDGTISVFDVTRAKFLHHLEGHFMPVRSLVYSPVDP  213 (315)
Q Consensus       134 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~s~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~  213 (315)
                      . ....++              ..+..+..+.-+..+..+++|++  .|.|||.....++..+......|.++.|+|...
T Consensus       138 ~-~p~~ti--------------lg~s~~~gIdh~~~~~~FaTcGe--~i~IWD~~R~~Pv~smswG~Dti~svkfNpvET  200 (433)
T KOG0268|consen  138 G-PPLHTI--------------LGKSVYLGIDHHRKNSVFATCGE--QIDIWDEQRDNPVSSMSWGADSISSVKFNPVET  200 (433)
T ss_pred             C-Ccceee--------------eccccccccccccccccccccCc--eeeecccccCCccceeecCCCceeEEecCCCcc
Confidence            4 222222              22233556666666778888865  599999999999999998889999999999999


Q ss_pred             cEEEEEeCCCeEEEEeCCCCeeEEEeecccccEEEEEEcCCCCeEEEEeCCCcEEEEecCc-cceehcccccccceEEEE
Q 021247          214 RVLFSASDDTHVHMYDAEGKSLVTAMSGHASWVLSVDASPDGAAITTGSSDRTVKLWDLNM-RAAMQSMTNHTDQVWGVS  292 (315)
Q Consensus       214 ~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~d~~i~iwd~~~-~~~~~~~~~~~~~v~~~~  292 (315)
                      .+|++++.|+.|.+||++..+++....- ...-+.++|+|..-.+++|..|..++.+|++. .+++....+|..+|.+|.
T Consensus       201 sILas~~sDrsIvLyD~R~~~Pl~KVi~-~mRTN~IswnPeafnF~~a~ED~nlY~~DmR~l~~p~~v~~dhvsAV~dVd  279 (433)
T KOG0268|consen  201 SILASCASDRSIVLYDLRQASPLKKVIL-TMRTNTICWNPEAFNFVAANEDHNLYTYDMRNLSRPLNVHKDHVSAVMDVD  279 (433)
T ss_pred             hheeeeccCCceEEEecccCCccceeee-eccccceecCccccceeeccccccceehhhhhhcccchhhcccceeEEEec
Confidence            9999999999999999998877655432 22346789999888899999999999999976 467888889999999999


Q ss_pred             EeeCCCEEEEEeCCCcEEEeec
Q 021247          293 FRPLGGRVVSVSDDKSISLYEY  314 (315)
Q Consensus       293 ~s~~~~~l~s~~~d~~i~i~~~  314 (315)
                      |||.|.-+++||.|++|+||..
T Consensus       280 fsptG~EfvsgsyDksIRIf~~  301 (433)
T KOG0268|consen  280 FSPTGQEFVSGSYDKSIRIFPV  301 (433)
T ss_pred             cCCCcchhccccccceEEEeec
Confidence            9999999999999999999975

>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.97  E-value=1.2e-29  Score=212.66  Aligned_cols=243  Identities=21%  Similarity=0.371  Sum_probs=203.5

Q ss_pred             cccceE---EEEeCC-CCCEEEEeeCCCeEEEEECCCCc------eeEEeeCCcccEEEEEECCCCCeEEEEecCCCeEE
Q 021247           59 HCLGVV---SVAAHP-SGIIAASASLDSFVRVFDVDTNA------SIATLEASPSEVWQMQFDPKGTTLAVAGGGSASVK  128 (315)
Q Consensus        59 h~~~v~---~~~~~~-~g~~l~s~~~d~~i~~w~~~~~~------~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~  128 (315)
                      |..++.   .++.++ .+++|.+||.||.|++|++....      .+..++.|.+.|..+.....++. +++++.|-+|+
T Consensus        20 n~~~v~~~~~Lq~da~~~ryLfTgGRDg~i~~W~~~~d~~~~s~~~~asme~HsDWVNDiiL~~~~~t-lIS~SsDtTVK   98 (735)
T KOG0308|consen   20 NRNGVNITKALQLDAPNGRYLFTGGRDGIIRLWSVTQDSNEPSTPYIASMEHHSDWVNDIILCGNGKT-LISASSDTTVK   98 (735)
T ss_pred             ccccccchhhccccCCCCceEEecCCCceEEEeccccccCCcccchhhhhhhhHhHHhhHHhhcCCCc-eEEecCCceEE
Confidence            445555   555554 55679999999999999987543      35677888888988888877764 57889999999


Q ss_pred             EEecCCcceeeeecCCCCCCCCCCccCCCCcceEEEEE-CCCCCEEEEecCCCcEEEEEccccee----------eeeec
Q 021247          129 LWDTATWNLIATLSIPRPEGLKPTDKSSSKKFVLSVAW-SPDGRRIACGSMDGTISVFDVTRAKF----------LHHLE  197 (315)
Q Consensus       129 ~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~-~~~~~~l~~~s~dg~i~i~d~~~~~~----------~~~~~  197 (315)
                      +|+....+..+.           .....|+++|.|+++ .++...+|+|+.|+.|++||+.++..          ...+.
T Consensus        99 ~W~~~~~~~~c~-----------stir~H~DYVkcla~~ak~~~lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~~sl~  167 (735)
T KOG0308|consen   99 VWNAHKDNTFCM-----------STIRTHKDYVKCLAYIAKNNELVASGGLDRKIFLWDINTGTATLVASFNNVTVNSLG  167 (735)
T ss_pred             EeecccCcchhH-----------hhhhcccchheeeeecccCceeEEecCCCccEEEEEccCcchhhhhhccccccccCC
Confidence            999865431111           112357889999999 78888999999999999999986622          12233


Q ss_pred             -CCccceEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCeeEEEeecccccEEEEEEcCCCCeEEEEeCCCcEEEEecCccc
Q 021247          198 -GHFMPVRSLVYSPVDPRVLFSASDDTHVHMYDAEGKSLVTAMSGHASWVLSVDASPDGAAITTGSSDRTVKLWDLNMRA  276 (315)
Q Consensus       198 -~~~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~  276 (315)
                       ++..+|.+++..+ .+..+++|+..+-|++||.++.+.+-.+.+|..-|..+..+++|..+++++.||+|++||+...+
T Consensus       168 sG~k~siYSLA~N~-t~t~ivsGgtek~lr~wDprt~~kimkLrGHTdNVr~ll~~dDGt~~ls~sSDgtIrlWdLgqQr  246 (735)
T KOG0308|consen  168 SGPKDSIYSLAMNQ-TGTIIVSGGTEKDLRLWDPRTCKKIMKLRGHTDNVRVLLVNDDGTRLLSASSDGTIRLWDLGQQR  246 (735)
T ss_pred             CCCccceeeeecCC-cceEEEecCcccceEEeccccccceeeeeccccceEEEEEcCCCCeEeecCCCceEEeeeccccc
Confidence             7888999999887 56789999999999999999998888899999999999999999999999999999999999999


Q ss_pred             eehcccccccceEEEEEeeCCCEEEEEeCCCcEEEeec
Q 021247          277 AMQSMTNHTDQVWGVSFRPLGGRVVSVSDDKSISLYEY  314 (315)
Q Consensus       277 ~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~i~i~~~  314 (315)
                      ++.++..|.+.||++.-+|+-.++.+|+.||.|..-|+
T Consensus       247 Cl~T~~vH~e~VWaL~~~~sf~~vYsG~rd~~i~~Tdl  284 (735)
T KOG0308|consen  247 CLATYIVHKEGVWALQSSPSFTHVYSGGRDGNIYRTDL  284 (735)
T ss_pred             eeeeEEeccCceEEEeeCCCcceEEecCCCCcEEeccc
Confidence            99999999999999999999999999999999987664

>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]

Probab=99.97  E-value=2.4e-29  Score=194.01  Aligned_cols=248  Identities=23%  Similarity=0.356  Sum_probs=197.5

Q ss_pred             hhccccceEEEEEeecCCCCCcEEEEeeCCCcEEEEcCCCCcceeecc--ccccceEEEEeCCCCCEEEEeeCCCeEEEE
Q 021247           10 ENAHEESVWAVTWVPATETRPALLLTGSLDETVKLWRPDDMQLERTNT--GHCLGVVSVAAHPSGIIAASASLDSFVRVF   87 (315)
Q Consensus        10 ~~~h~~~v~~v~~~~~~~~~~~~l~sgs~d~~v~~w~~~~~~~~~~~~--~h~~~v~~~~~~~~g~~l~s~~~d~~i~~w   87 (315)
                      +..|.++|+++.|.|...    +|++|+.|++|+++|+......+.++  ....+|.+++|+|.|.+++.|....++|++
T Consensus       168 lYDH~devn~l~FHPre~----ILiS~srD~tvKlFDfsK~saKrA~K~~qd~~~vrsiSfHPsGefllvgTdHp~~rlY  243 (430)
T KOG0640|consen  168 LYDHVDEVNDLDFHPRET----ILISGSRDNTVKLFDFSKTSAKRAFKVFQDTEPVRSISFHPSGEFLLVGTDHPTLRLY  243 (430)
T ss_pred             hhhccCcccceeecchhh----eEEeccCCCeEEEEecccHHHHHHHHHhhccceeeeEeecCCCceEEEecCCCceeEE
Confidence            568999999999999764    79999999999999987654433222  245689999999999999999999999999


Q ss_pred             ECCCCceeEEe---eCCcccEEEEEECCCCCeEEEEecCCCeEEEEecCCcceeeeecCCCCCCCCCCccCCCCcceEEE
Q 021247           88 DVDTNASIATL---EASPSEVWQMQFDPKGTTLAVAGGGSASVKLWDTATWNLIATLSIPRPEGLKPTDKSSSKKFVLSV  164 (315)
Q Consensus        88 ~~~~~~~~~~~---~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~  164 (315)
                      |+++.++...-   +.|.+.|.++.+++.++ ++++++.||.|++||--+.+++.++.-           ......|.+.
T Consensus       244 dv~T~QcfvsanPd~qht~ai~~V~Ys~t~~-lYvTaSkDG~IklwDGVS~rCv~t~~~-----------AH~gsevcSa  311 (430)
T KOG0640|consen  244 DVNTYQCFVSANPDDQHTGAITQVRYSSTGS-LYVTASKDGAIKLWDGVSNRCVRTIGN-----------AHGGSEVCSA  311 (430)
T ss_pred             eccceeEeeecCcccccccceeEEEecCCcc-EEEEeccCCcEEeeccccHHHHHHHHh-----------hcCCceeeeE
Confidence            99999886543   45778999999999988 568999999999999888877766531           1223458999


Q ss_pred             EECCCCCEEEEecCCCcEEEEEcccceeeeeecCCc--c---ceEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCeeEEEe
Q 021247          165 AWSPDGRRIACGSMDGTISVFDVTRAKFLHHLEGHF--M---PVRSLVYSPVDPRVLFSASDDTHVHMYDAEGKSLVTAM  239 (315)
Q Consensus       165 ~~~~~~~~l~~~s~dg~i~i~d~~~~~~~~~~~~~~--~---~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~  239 (315)
                      .|..+|+++++.+.|..+++|.+.+++.+....+..  +   --+...|+..+...|+---..+.+.-||.++...+..+
T Consensus       312 ~Ftkn~kyiLsSG~DS~vkLWEi~t~R~l~~YtGAg~tgrq~~rtqAvFNhtEdyVl~pDEas~slcsWdaRtadr~~l~  391 (430)
T KOG0640|consen  312 VFTKNGKYILSSGKDSTVKLWEISTGRMLKEYTGAGTTGRQKHRTQAVFNHTEDYVLFPDEASNSLCSWDARTADRVALL  391 (430)
T ss_pred             EEccCCeEEeecCCcceeeeeeecCCceEEEEecCCcccchhhhhhhhhcCccceEEccccccCceeeccccchhhhhhc
Confidence            999999999999999999999999999988776531  1   11223354434433433334577899999887554433


Q ss_pred             -ecccccEEEEEEcCCCCeEEEEeCCCcEEEEecC
Q 021247          240 -SGHASWVLSVDASPDGAAITTGSSDRTVKLWDLN  273 (315)
Q Consensus       240 -~~~~~~i~~~~~~~~~~~l~s~~~d~~i~iwd~~  273 (315)
                       .+|++.+..+.-+|.+.-+++++.|.++|+|--+
T Consensus       392 slgHn~a~R~i~HSP~~p~FmTcsdD~raRFWyrr  426 (430)
T KOG0640|consen  392 SLGHNGAVRWIVHSPVEPAFMTCSDDFRARFWYRR  426 (430)
T ss_pred             ccCCCCCceEEEeCCCCCceeeecccceeeeeeec
Confidence             5899999999999999999999999999999643

>KOG0641 consensus WD40 repeat protein [General function prediction only]

Probab=99.97  E-value=3e-27  Score=174.97  Aligned_cols=250  Identities=22%  Similarity=0.387  Sum_probs=202.8

Q ss_pred             hccccceEEEEEeecCCCCCcEEEEeeCCCcEEEEcCCCCc--c---eeeccccccceEEEEeCC----CCCEEEEe-eC
Q 021247           11 NAHEESVWAVTWVPATETRPALLLTGSLDETVKLWRPDDMQ--L---ERTNTGHCLGVVSVAAHP----SGIIAASA-SL   80 (315)
Q Consensus        11 ~~h~~~v~~v~~~~~~~~~~~~l~sgs~d~~v~~w~~~~~~--~---~~~~~~h~~~v~~~~~~~----~g~~l~s~-~~   80 (315)
                      +-|...|+|++|+|.+.    ++++||.|.+|++..++...  .   ..++..|.+.|..++|-.    .|.+|+++ ..
T Consensus        86 khhkgsiyc~~ws~~ge----liatgsndk~ik~l~fn~dt~~~~g~dle~nmhdgtirdl~fld~~~s~~~il~s~gag  161 (350)
T KOG0641|consen   86 KHHKGSIYCTAWSPCGE----LIATGSNDKTIKVLPFNADTCNATGHDLEFNMHDGTIRDLAFLDDPESGGAILASAGAG  161 (350)
T ss_pred             cccCccEEEEEecCccC----eEEecCCCceEEEEecccccccccCcceeeeecCCceeeeEEecCCCcCceEEEecCCC
Confidence            45788999999999886    79999999999988654322  1   224566888999999843    34577765 45


Q ss_pred             CCeEEEEECCCCceeEEeeCCcccEEEEEECCCCCeEEEEecCCCeEEEEecCCcceeeeecCCCCCCCCCCccCCCCcc
Q 021247           81 DSFVRVFDVDTNASIATLEASPSEVWQMQFDPKGTTLAVAGGGSASVKLWDTATWNLIATLSIPRPEGLKPTDKSSSKKF  160 (315)
Q Consensus        81 d~~i~~w~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  160 (315)
                      |..|++=|...++.+..+.+|.+.|..+- +.++ .++++|+.|.+|++||++-...+.++......      .......
T Consensus       162 dc~iy~tdc~~g~~~~a~sghtghilaly-swn~-~m~~sgsqdktirfwdlrv~~~v~~l~~~~~~------~glessa  233 (350)
T KOG0641|consen  162 DCKIYITDCGRGQGFHALSGHTGHILALY-SWNG-AMFASGSQDKTIRFWDLRVNSCVNTLDNDFHD------GGLESSA  233 (350)
T ss_pred             cceEEEeecCCCCcceeecCCcccEEEEE-EecC-cEEEccCCCceEEEEeeeccceeeeccCcccC------CCcccce
Confidence            77788888889999999999999998763 2233 36789999999999999977666665432221      1123456


Q ss_pred             eEEEEECCCCCEEEEecCCCcEEEEEcccceeeeeecCCccceEEEEEcCCCCcEEEEEeCCCeEEEEeCCCC---e-eE
Q 021247          161 VLSVAWSPDGRRIACGSMDGTISVFDVTRAKFLHHLEGHFMPVRSLVYSPVDPRVLFSASDDTHVHMYDAEGK---S-LV  236 (315)
Q Consensus       161 i~~~~~~~~~~~l~~~s~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~---~-~~  236 (315)
                      |..++..|.|++|++|..|....+||++.++.++.+..|...|+++.|+| +..++++++-|.+|++=|+++.   + .+
T Consensus       234 vaav~vdpsgrll~sg~~dssc~lydirg~r~iq~f~phsadir~vrfsp-~a~yllt~syd~~ikltdlqgdla~el~~  312 (350)
T KOG0641|consen  234 VAAVAVDPSGRLLASGHADSSCMLYDIRGGRMIQRFHPHSADIRCVRFSP-GAHYLLTCSYDMKIKLTDLQGDLAHELPI  312 (350)
T ss_pred             eEEEEECCCcceeeeccCCCceEEEEeeCCceeeeeCCCccceeEEEeCC-CceEEEEecccceEEEeecccchhhcCce
Confidence            89999999999999999999999999999999999999999999999999 7889999999999999998753   1 22


Q ss_pred             EEeecccccEEEEEEcCCCCeEEEEeCCCcEEEEecC
Q 021247          237 TAMSGHASWVLSVDASPDGAAITTGSSDRTVKLWDLN  273 (315)
Q Consensus       237 ~~~~~~~~~i~~~~~~~~~~~l~s~~~d~~i~iwd~~  273 (315)
                      .....|...+..+.|+|..-.+++.+.|.++.+|-++
T Consensus       313 ~vv~ehkdk~i~~rwh~~d~sfisssadkt~tlwa~~  349 (350)
T KOG0641|consen  313 MVVAEHKDKAIQCRWHPQDFSFISSSADKTATLWALN  349 (350)
T ss_pred             EEEEeccCceEEEEecCccceeeeccCcceEEEeccC
Confidence            3345789999999999998889999999999999764

>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]

Probab=99.97  E-value=3.2e-29  Score=199.79  Aligned_cols=245  Identities=20%  Similarity=0.296  Sum_probs=205.7

Q ss_pred             cchhhhhhccccceEEEEEeecCCCCCcEEEEeeCCCcEEEEcCCCCcceeeccccccceEEEEeCCCCCEEEEeeCCCe
Q 021247            4 AGLKSVENAHEESVWAVTWVPATETRPALLLTGSLDETVKLWRPDDMQLERTNTGHCLGVVSVAAHPSGIIAASASLDSF   83 (315)
Q Consensus         4 ~~~~~~~~~h~~~v~~v~~~~~~~~~~~~l~sgs~d~~v~~w~~~~~~~~~~~~~h~~~v~~~~~~~~g~~l~s~~~d~~   83 (315)
                      +.+.+++.+-.++|+.+.|-++..    .+++++.|+.+++|+.+..++..++.||++.|+++.|......+++|+.|.+
T Consensus       209 ~~~~~tLaGs~g~it~~d~d~~~~----~~iAas~d~~~r~Wnvd~~r~~~TLsGHtdkVt~ak~~~~~~~vVsgs~DRt  284 (459)
T KOG0288|consen  209 SELISTLAGSLGNITSIDFDSDNK----HVIAASNDKNLRLWNVDSLRLRHTLSGHTDKVTAAKFKLSHSRVVSGSADRT  284 (459)
T ss_pred             hhhhhhhhccCCCcceeeecCCCc----eEEeecCCCceeeeeccchhhhhhhcccccceeeehhhccccceeeccccch
Confidence            456777888889999999988665    5899999999999999999999999999999999999888877999999999


Q ss_pred             EEEEECCCCceeEEeeCCcccEEEEEECCCCCeEEEEecCCCeEEEEecCCcceeeeecCCCCCCCCCCccCCCCcceEE
Q 021247           84 VRVFDVDTNASIATLEASPSEVWQMQFDPKGTTLAVAGGGSASVKLWDTATWNLIATLSIPRPEGLKPTDKSSSKKFVLS  163 (315)
Q Consensus        84 i~~w~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~  163 (315)
                      |++||+....|..++-. ...+..+..++   ..+++|..|+.|++||.++.......+..              ..|++
T Consensus       285 iK~WDl~k~~C~kt~l~-~S~cnDI~~~~---~~~~SgH~DkkvRfwD~Rs~~~~~sv~~g--------------g~vtS  346 (459)
T KOG0288|consen  285 IKLWDLQKAYCSKTVLP-GSQCNDIVCSI---SDVISGHFDKKVRFWDIRSADKTRSVPLG--------------GRVTS  346 (459)
T ss_pred             hhhhhhhhhheeccccc-cccccceEecc---eeeeecccccceEEEeccCCceeeEeecC--------------cceee
Confidence            99999999888776543 23455555543   25678999999999999988777665432              24899


Q ss_pred             EEECCCCCEEEEecCCCcEEEEEcccceeeeeecCC----ccceEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCeeEEEe
Q 021247          164 VAWSPDGRRIACGSMDGTISVFDVTRAKFLHHLEGH----FMPVRSLVYSPVDPRVLFSASDDTHVHMYDAEGKSLVTAM  239 (315)
Q Consensus       164 ~~~~~~~~~l~~~s~dg~i~i~d~~~~~~~~~~~~~----~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~  239 (315)
                      +..++++..+.+++.|..+.++|+++......+...    ....+.+.|+| ++.|+++|+.||.|+||+..++++...+
T Consensus       347 l~ls~~g~~lLsssRDdtl~viDlRt~eI~~~~sA~g~k~asDwtrvvfSp-d~~YvaAGS~dgsv~iW~v~tgKlE~~l  425 (459)
T KOG0288|consen  347 LDLSMDGLELLSSSRDDTLKVIDLRTKEIRQTFSAEGFKCASDWTRVVFSP-DGSYVAAGSADGSVYIWSVFTGKLEKVL  425 (459)
T ss_pred             EeeccCCeEEeeecCCCceeeeecccccEEEEeeccccccccccceeEECC-CCceeeeccCCCcEEEEEccCceEEEEe
Confidence            999999999999999999999999988877665432    12367788999 7889999999999999999999888777


Q ss_pred             ecccc--cEEEEEEcCCCCeEEEEeCCCcEEEEe
Q 021247          240 SGHAS--WVLSVDASPDGAAITTGSSDRTVKLWD  271 (315)
Q Consensus       240 ~~~~~--~i~~~~~~~~~~~l~s~~~d~~i~iwd  271 (315)
                      .....  .|++++|+|.|..|++++.++.+.+|.
T Consensus       426 ~~s~s~~aI~s~~W~~sG~~Llsadk~~~v~lW~  459 (459)
T KOG0288|consen  426 SLSTSNAAITSLSWNPSGSGLLSADKQKAVTLWT  459 (459)
T ss_pred             ccCCCCcceEEEEEcCCCchhhcccCCcceEecC
Confidence            54332  699999999999999999999999993

>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.97  E-value=3.3e-28  Score=204.43  Aligned_cols=242  Identities=28%  Similarity=0.461  Sum_probs=207.3

Q ss_pred             cccceEEEEEeecCCCCCcEEEEeeCCCcEEEEcCCCCcceeeccc-cccceEEEEeCCCCCEEEEeeCCCeEEEEECCC
Q 021247           13 HEESVWAVTWVPATETRPALLLTGSLDETVKLWRPDDMQLERTNTG-HCLGVVSVAAHPSGIIAASASLDSFVRVFDVDT   91 (315)
Q Consensus        13 h~~~v~~v~~~~~~~~~~~~l~sgs~d~~v~~w~~~~~~~~~~~~~-h~~~v~~~~~~~~g~~l~s~~~d~~i~~w~~~~   91 (315)
                      +++.|++|.|++++.    .|+.|-.+|.|+|||..+.+..+.+.+ |...|-+++|.  +..+.+|+.|+.|..+|++.
T Consensus       216 ~~~~vtSv~ws~~G~----~LavG~~~g~v~iwD~~~~k~~~~~~~~h~~rvg~laW~--~~~lssGsr~~~I~~~dvR~  289 (484)
T KOG0305|consen  216 GEELVTSVKWSPDGS----HLAVGTSDGTVQIWDVKEQKKTRTLRGSHASRVGSLAWN--SSVLSSGSRDGKILNHDVRI  289 (484)
T ss_pred             CCCceEEEEECCCCC----EEEEeecCCeEEEEehhhccccccccCCcCceeEEEecc--CceEEEecCCCcEEEEEEec
Confidence            378999999999886    699999999999999988887777777 99999999998  67889999999999999998


Q ss_pred             CceeEE-eeCCcccEEEEEECCCCCeEEEEecCCCeEEEEecCCcceeeeecCCCCCCCCCCccCCCCcceEEEEECC-C
Q 021247           92 NASIAT-LEASPSEVWQMQFDPKGTTLAVAGGGSASVKLWDTATWNLIATLSIPRPEGLKPTDKSSSKKFVLSVAWSP-D  169 (315)
Q Consensus        92 ~~~~~~-~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~  169 (315)
                      .+.... +.+|...|..++|++++.++ ++|+.|+.+.|||....+.+..+             ..|...|..++|+| .
T Consensus       290 ~~~~~~~~~~H~qeVCgLkws~d~~~l-ASGgnDN~~~Iwd~~~~~p~~~~-------------~~H~aAVKA~awcP~q  355 (484)
T KOG0305|consen  290 SQHVVSTLQGHRQEVCGLKWSPDGNQL-ASGGNDNVVFIWDGLSPEPKFTF-------------TEHTAAVKALAWCPWQ  355 (484)
T ss_pred             chhhhhhhhcccceeeeeEECCCCCee-ccCCCccceEeccCCCccccEEE-------------eccceeeeEeeeCCCc
Confidence            776544 78899999999999999865 78999999999999554444333             34667799999999 4


Q ss_pred             CCEEEEe--cCCCcEEEEEcccceeeeeecCCccceEEEEEcCCCCcEEEEEe-CCCeEEEEeCCCCeeEEEeecccccE
Q 021247          170 GRRIACG--SMDGTISVFDVTRAKFLHHLEGHFMPVRSLVYSPVDPRVLFSAS-DDTHVHMYDAEGKSLVTAMSGHASWV  246 (315)
Q Consensus       170 ~~~l~~~--s~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~-~d~~i~~wd~~~~~~~~~~~~~~~~i  246 (315)
                      ...||+|  +.|+.|++||..++..+..+.. ...|..+.|++...+++.+-+ .+..|.||+..+.+.+..+.+|...|
T Consensus       356 ~~lLAsGGGs~D~~i~fwn~~~g~~i~~vdt-gsQVcsL~Wsk~~kEi~sthG~s~n~i~lw~~ps~~~~~~l~gH~~RV  434 (484)
T KOG0305|consen  356 SGLLATGGGSADRCIKFWNTNTGARIDSVDT-GSQVCSLIWSKKYKELLSTHGYSENQITLWKYPSMKLVAELLGHTSRV  434 (484)
T ss_pred             cCceEEcCCCcccEEEEEEcCCCcEeccccc-CCceeeEEEcCCCCEEEEecCCCCCcEEEEeccccceeeeecCCccee
Confidence            6678875  5799999999999988877664 357999999996656655544 47789999999999999999999999


Q ss_pred             EEEEEcCCCCeEEEEeCCCcEEEEecCcc
Q 021247          247 LSVDASPDGAAITTGSSDRTVKLWDLNMR  275 (315)
Q Consensus       247 ~~~~~~~~~~~l~s~~~d~~i~iwd~~~~  275 (315)
                      ..++++|+|..+++|+.|.++++|++-..
T Consensus       435 l~la~SPdg~~i~t~a~DETlrfw~~f~~  463 (484)
T KOG0305|consen  435 LYLALSPDGETIVTGAADETLRFWNLFDE  463 (484)
T ss_pred             EEEEECCCCCEEEEecccCcEEeccccCC
Confidence            99999999999999999999999998754

>KOG0289 consensus mRNA splicing factor [General function prediction only]

Probab=99.97  E-value=8.3e-28  Score=192.94  Aligned_cols=249  Identities=19%  Similarity=0.299  Sum_probs=209.2

Q ss_pred             chhhhhhccccceEEEEEeecCCCCCcEEEEeeCCCcEEEEcCCCCcceeeccccccceEEEEeCCCCCEEEEeeCCCeE
Q 021247            5 GLKSVENAHEESVWAVTWVPATETRPALLLTGSLDETVKLWRPDDMQLERTNTGHCLGVVSVAAHPSGIIAASASLDSFV   84 (315)
Q Consensus         5 ~~~~~~~~h~~~v~~v~~~~~~~~~~~~l~sgs~d~~v~~w~~~~~~~~~~~~~h~~~v~~~~~~~~g~~l~s~~~d~~i   84 (315)
                      ++-.+..||+..|+.+.|.|...    .++++|.|..|++|.............|..+|+.+..+|.|.||++++.|++.
T Consensus       252 q~l~~~~Gh~kki~~v~~~~~~~----~v~~aSad~~i~vws~~~~s~~~~~~~h~~~V~~ls~h~tgeYllsAs~d~~w  327 (506)
T KOG0289|consen  252 QILATLKGHTKKITSVKFHKDLD----TVITASADEIIRVWSVPLSSEPTSSRPHEEPVTGLSLHPTGEYLLSASNDGTW  327 (506)
T ss_pred             hhhhhccCcceEEEEEEeccchh----heeecCCcceEEeeccccccCccccccccccceeeeeccCCcEEEEecCCceE
Confidence            34456789999999999999765    59999999999999987766666677899999999999999999999999999


Q ss_pred             EEEECCCCceeEEeeCC--cccEEEEEECCCCCeEEEEecCCCeEEEEecCCcceeeeecCCCCCCCCCCccCCCCcceE
Q 021247           85 RVFDVDTNASIATLEAS--PSEVWQMQFDPKGTTLAVAGGGSASVKLWDTATWNLIATLSIPRPEGLKPTDKSSSKKFVL  162 (315)
Q Consensus        85 ~~w~~~~~~~~~~~~~~--~~~v~~~~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~  162 (315)
                      -..|+.++..+......  .-.+.+.+|||+|. ++.+|..|+.+++||+.....+..+.             +|...|.
T Consensus       328 ~Fsd~~~g~~lt~vs~~~s~v~~ts~~fHpDgL-ifgtgt~d~~vkiwdlks~~~~a~Fp-------------ght~~vk  393 (506)
T KOG0289|consen  328 AFSDISSGSQLTVVSDETSDVEYTSAAFHPDGL-IFGTGTPDGVVKIWDLKSQTNVAKFP-------------GHTGPVK  393 (506)
T ss_pred             EEEEccCCcEEEEEeeccccceeEEeeEcCCce-EEeccCCCceEEEEEcCCccccccCC-------------CCCCcee
Confidence            99999999887766542  34588999999987 56789999999999998766555443             3566799


Q ss_pred             EEEECCCCCEEEEecCCCcEEEEEcccceeeeeecC-CccceEEEEEcCCCCcEEEEEeCCCeEEEEeCC--CCeeEEEe
Q 021247          163 SVAWSPDGRRIACGSMDGTISVFDVTRAKFLHHLEG-HFMPVRSLVYSPVDPRVLFSASDDTHVHMYDAE--GKSLVTAM  239 (315)
Q Consensus       163 ~~~~~~~~~~l~~~s~dg~i~i~d~~~~~~~~~~~~-~~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~--~~~~~~~~  239 (315)
                      .++|+.+|.+|+++..|+.|++||++..+...++.. ...++.++.|.+ .+.+|+.++.|-.|++++..  ..+.+..+
T Consensus       394 ~i~FsENGY~Lat~add~~V~lwDLRKl~n~kt~~l~~~~~v~s~~fD~-SGt~L~~~g~~l~Vy~~~k~~k~W~~~~~~  472 (506)
T KOG0289|consen  394 AISFSENGYWLATAADDGSVKLWDLRKLKNFKTIQLDEKKEVNSLSFDQ-SGTYLGIAGSDLQVYICKKKTKSWTEIKEL  472 (506)
T ss_pred             EEEeccCceEEEEEecCCeEEEEEehhhcccceeeccccccceeEEEcC-CCCeEEeecceeEEEEEecccccceeeehh
Confidence            999999999999999999999999998776665543 334789999987 56788888888888888854  44567777


Q ss_pred             ecccccEEEEEEcCCCCeEEEEeCCCcEEEEec
Q 021247          240 SGHASWVLSVDASPDGAAITTGSSDRTVKLWDL  272 (315)
Q Consensus       240 ~~~~~~i~~~~~~~~~~~l~s~~~d~~i~iwd~  272 (315)
                      ..|.+..+.+.|..+.+++++++.|..++++-+
T Consensus       473 ~~~sg~st~v~Fg~~aq~l~s~smd~~l~~~a~  505 (506)
T KOG0289|consen  473 ADHSGLSTGVRFGEHAQYLASTSMDAILRLYAL  505 (506)
T ss_pred             hhcccccceeeecccceEEeeccchhheEEeec
Confidence            888888999999999999999999999888754

>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]

Probab=99.96  E-value=7.3e-29  Score=192.60  Aligned_cols=242  Identities=19%  Similarity=0.305  Sum_probs=204.2

Q ss_pred             ccccceEEEEeCCCCCEEEEeeCCCeEEEEECCCCceeE--------EeeCCcccEEEEEECCCCCeEEEEecCCCeEEE
Q 021247           58 GHCLGVVSVAAHPSGIIAASASLDSFVRVFDVDTNASIA--------TLEASPSEVWQMQFDPKGTTLAVAGGGSASVKL  129 (315)
Q Consensus        58 ~h~~~v~~~~~~~~g~~l~s~~~d~~i~~w~~~~~~~~~--------~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~  129 (315)
                      +....+-|..|+|||+++++|+.||.|.+||..+++...        .+..+..+|.++.|+-+.. ++++|+.||.|++
T Consensus       211 g~KSh~EcA~FSPDgqyLvsgSvDGFiEVWny~~GKlrKDLkYQAqd~fMMmd~aVlci~FSRDsE-MlAsGsqDGkIKv  289 (508)
T KOG0275|consen  211 GQKSHVECARFSPDGQYLVSGSVDGFIEVWNYTTGKLRKDLKYQAQDNFMMMDDAVLCISFSRDSE-MLASGSQDGKIKV  289 (508)
T ss_pred             ccccchhheeeCCCCceEeeccccceeeeehhccchhhhhhhhhhhcceeecccceEEEeecccHH-HhhccCcCCcEEE
Confidence            445567889999999999999999999999999886443        3445678999999998866 5689999999999


Q ss_pred             EecCCcceeeeecCCCCCCCCCCccCCCCcceEEEEECCCCCEEEEecCCCcEEEEEcccceeeeeecCCccceEEEEEc
Q 021247          130 WDTATWNLIATLSIPRPEGLKPTDKSSSKKFVLSVAWSPDGRRIACGSMDGTISVFDVTRAKFLHHLEGHFMPVRSLVYS  209 (315)
Q Consensus       130 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~s~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~  209 (315)
                      |.++++.++..+.            ..|...|+++.|+.|+..+++++.|.++++.-+..++.+..+++|...|+...|.
T Consensus       290 Wri~tG~ClRrFd------------rAHtkGvt~l~FSrD~SqiLS~sfD~tvRiHGlKSGK~LKEfrGHsSyvn~a~ft  357 (508)
T KOG0275|consen  290 WRIETGQCLRRFD------------RAHTKGVTCLSFSRDNSQILSASFDQTVRIHGLKSGKCLKEFRGHSSYVNEATFT  357 (508)
T ss_pred             EEEecchHHHHhh------------hhhccCeeEEEEccCcchhhcccccceEEEeccccchhHHHhcCccccccceEEc
Confidence            9999998886663            2345559999999999999999999999999999999999999999999999999


Q ss_pred             CCCCcEEEEEeCCCeEEEEeCCCCeeEEEee--cccccEEEEEEcC-CCCeEEEEeCCCcEEEEecCccceehccc---c
Q 021247          210 PVDPRVLFSASDDTHVHMYDAEGKSLVTAMS--GHASWVLSVDASP-DGAAITTGSSDRTVKLWDLNMRAAMQSMT---N  283 (315)
Q Consensus       210 ~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~--~~~~~i~~~~~~~-~~~~l~s~~~d~~i~iwd~~~~~~~~~~~---~  283 (315)
                      + ++..+++++.||++++|+.++.+++..+.  +...+|+++..-| +...++++...++|.|-++. +..++.+.   .
T Consensus       358 ~-dG~~iisaSsDgtvkvW~~KtteC~~Tfk~~~~d~~vnsv~~~PKnpeh~iVCNrsntv~imn~q-GQvVrsfsSGkR  435 (508)
T KOG0275|consen  358 D-DGHHIISASSDGTVKVWHGKTTECLSTFKPLGTDYPVNSVILLPKNPEHFIVCNRSNTVYIMNMQ-GQVVRSFSSGKR  435 (508)
T ss_pred             C-CCCeEEEecCCccEEEecCcchhhhhhccCCCCcccceeEEEcCCCCceEEEEcCCCeEEEEecc-ceEEeeeccCCc
Confidence            7 78899999999999999999988877664  3455688888777 45678889999999999886 45555543   2


Q ss_pred             cccceEEEEEeeCCCEEEEEeCCCcEEEeec
Q 021247          284 HTDQVWGVSFRPLGGRVVSVSDDKSISLYEY  314 (315)
Q Consensus       284 ~~~~v~~~~~s~~~~~l~s~~~d~~i~i~~~  314 (315)
                      ..+...++.+||.|.++.+.+.|+.++.|.+
T Consensus       436 EgGdFi~~~lSpkGewiYcigED~vlYCF~~  466 (508)
T KOG0275|consen  436 EGGDFINAILSPKGEWIYCIGEDGVLYCFSV  466 (508)
T ss_pred             cCCceEEEEecCCCcEEEEEccCcEEEEEEe
Confidence            3456778999999999999999999998865

>KOG1273 consensus WD40 repeat protein [General function prediction only]

Probab=99.96  E-value=1.8e-27  Score=183.93  Aligned_cols=282  Identities=15%  Similarity=0.259  Sum_probs=215.7

Q ss_pred             eEEEEEeecCCCCCcEEEEeeCCCcEEEEcCCCCcceeeccccccceEEEEeCCCCCEEEEeeCCCeEEEEECCCCceeE
Q 021247           17 VWAVTWVPATETRPALLLTGSLDETVKLWRPDDMQLERTNTGHCLGVVSVAAHPSGIIAASASLDSFVRVFDVDTNASIA   96 (315)
Q Consensus        17 v~~v~~~~~~~~~~~~l~sgs~d~~v~~w~~~~~~~~~~~~~h~~~v~~~~~~~~g~~l~s~~~d~~i~~w~~~~~~~~~   96 (315)
                      -.|+.|++-+.    +||.|+.||.|.|||+.+....+.+.+|..+|.+++|+++|..|++++.|..|.+||+..+.++.
T Consensus        26 a~~~~Fs~~G~----~lAvGc~nG~vvI~D~~T~~iar~lsaH~~pi~sl~WS~dgr~LltsS~D~si~lwDl~~gs~l~  101 (405)
T KOG1273|consen   26 AECCQFSRWGD----YLAVGCANGRVVIYDFDTFRIARMLSAHVRPITSLCWSRDGRKLLTSSRDWSIKLWDLLKGSPLK  101 (405)
T ss_pred             cceEEeccCcc----eeeeeccCCcEEEEEccccchhhhhhccccceeEEEecCCCCEeeeecCCceeEEEeccCCCcee
Confidence            67889998765    79999999999999999999999999999999999999999999999999999999999999888


Q ss_pred             EeeCCcccEEEEEECCCCCeEEEEecCCCeEEEEecCCcceeeeecCCCCCCCCCCccCCCCcceEEEEECCCCCEEEEe
Q 021247           97 TLEASPSEVWQMQFDPKGTTLAVAGGGSASVKLWDTATWNLIATLSIPRPEGLKPTDKSSSKKFVLSVAWSPDGRRIACG  176 (315)
Q Consensus        97 ~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~  176 (315)
                      .+. .+.+|+.+.|+|.....+++.-.+-.-.+.+...  ..+++ ++....      ......-.+..|.+.|+++++|
T Consensus       102 rir-f~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~--~~h~~-Lp~d~d------~dln~sas~~~fdr~g~yIitG  171 (405)
T KOG1273|consen  102 RIR-FDSPVWGAQWHPRKRNKCVATIMEESPVVIDFSD--PKHSV-LPKDDD------GDLNSSASHGVFDRRGKYIITG  171 (405)
T ss_pred             EEE-ccCccceeeeccccCCeEEEEEecCCcEEEEecC--Cceee-ccCCCc------cccccccccccccCCCCEEEEe
Confidence            776 4689999999998766666655554444444433  11111 111100      0011112234688899999999


Q ss_pred             cCCCcEEEEEcccceeeeeecCCc-cceEEEEEcCCCCcEEEEEeCCCeEEEEeCCCC-------ee--EEEeecc--cc
Q 021247          177 SMDGTISVFDVTRAKFLHHLEGHF-MPVRSLVYSPVDPRVLFSASDDTHVHMYDAEGK-------SL--VTAMSGH--AS  244 (315)
Q Consensus       177 s~dg~i~i~d~~~~~~~~~~~~~~-~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~-------~~--~~~~~~~--~~  244 (315)
                      ...|.+.++|.++.+++..++-.. ..|..+.++. .++.|+.-+.|+.|+.|+++.-       ++  .+.++.-  ..
T Consensus       172 tsKGkllv~~a~t~e~vas~rits~~~IK~I~~s~-~g~~liiNtsDRvIR~ye~~di~~~~r~~e~e~~~K~qDvVNk~  250 (405)
T KOG1273|consen  172 TSKGKLLVYDAETLECVASFRITSVQAIKQIIVSR-KGRFLIINTSDRVIRTYEISDIDDEGRDGEVEPEHKLQDVVNKL  250 (405)
T ss_pred             cCcceEEEEecchheeeeeeeechheeeeEEEEec-cCcEEEEecCCceEEEEehhhhcccCccCCcChhHHHHHHHhhh
Confidence            999999999999998887776544 6788888885 7889999999999999997621       11  1111110  11


Q ss_pred             cEEEEEEcCCCCeEEEEeC-CCcEEEEecCccceehcccccc-cceEEEEEeeCCCEEEEEeCCCcEEEeec
Q 021247          245 WVLSVDASPDGAAITTGSS-DRTVKLWDLNMRAAMQSMTNHT-DQVWGVSFRPLGGRVVSVSDDKSISLYEY  314 (315)
Q Consensus       245 ~i~~~~~~~~~~~l~s~~~-d~~i~iwd~~~~~~~~~~~~~~-~~v~~~~~s~~~~~l~s~~~d~~i~i~~~  314 (315)
                      .=.++.|+.+|.+++.++. -..++||.-..|..++.+.+.. +....+.|+|-...+++. +.|.++||..
T Consensus       251 ~Wk~ccfs~dgeYv~a~s~~aHaLYIWE~~~GsLVKILhG~kgE~l~DV~whp~rp~i~si-~sg~v~iw~~  321 (405)
T KOG1273|consen  251 QWKKCCFSGDGEYVCAGSARAHALYIWEKSIGSLVKILHGTKGEELLDVNWHPVRPIIASI-ASGVVYIWAV  321 (405)
T ss_pred             hhhheeecCCccEEEeccccceeEEEEecCCcceeeeecCCchhheeecccccceeeeeec-cCCceEEEEe
Confidence            1235788999998876654 4569999999999988887766 567789999988888888 7899999964

>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.96  E-value=1.5e-28  Score=183.49  Aligned_cols=248  Identities=25%  Similarity=0.417  Sum_probs=196.1

Q ss_pred             ccccccceEEEEeCCCCCEEEEeeCCCeEEEEECCCCc---eeEEeeCCcccEEEEEE-CCCCCeEEEEecCCCeEEEEe
Q 021247           56 NTGHCLGVVSVAAHPSGIIAASASLDSFVRVFDVDTNA---SIATLEASPSEVWQMQF-DPKGTTLAVAGGGSASVKLWD  131 (315)
Q Consensus        56 ~~~h~~~v~~~~~~~~g~~l~s~~~d~~i~~w~~~~~~---~~~~~~~~~~~v~~~~~-~~~~~~~~~~~~~d~~i~~~d  131 (315)
                      -..|.+.|-.+.....|++|++++.|++|||+.++++.   .+.++.+|.+||+.++| +|.-..++++++.|+.|.||.
T Consensus         7 dt~H~D~IHda~lDyygkrlATcsSD~tVkIf~v~~n~~s~ll~~L~Gh~GPVwqv~wahPk~G~iLAScsYDgkVIiWk   86 (299)
T KOG1332|consen    7 DTQHEDMIHDAQLDYYGKRLATCSSDGTVKIFEVRNNGQSKLLAELTGHSGPVWKVAWAHPKFGTILASCSYDGKVIIWK   86 (299)
T ss_pred             hhhhhhhhhHhhhhhhcceeeeecCCccEEEEEEcCCCCceeeeEecCCCCCeeEEeecccccCcEeeEeecCceEEEEe
Confidence            35688888888888899999999999999999998764   46789999999999998 565555788999999999998


Q ss_pred             cCCcceeeeecCCCCCCCCCCccCCCCcceEEEEECCC--CCEEEEecCCCcEEEEEcccc-e--eeeeecCCccceEEE
Q 021247          132 TATWNLIATLSIPRPEGLKPTDKSSSKKFVLSVAWSPD--GRRIACGSMDGTISVFDVTRA-K--FLHHLEGHFMPVRSL  206 (315)
Q Consensus       132 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~--~~~l~~~s~dg~i~i~d~~~~-~--~~~~~~~~~~~v~~~  206 (315)
                      -.+++..+           ......|...+++++|.|.  |-.|++++.||.|.+.+.... .  .......|...|+++
T Consensus        87 e~~g~w~k-----------~~e~~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~w~t~ki~~aH~~GvnsV  155 (299)
T KOG1332|consen   87 EENGRWTK-----------AYEHAAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGGWTTSKIVFAHEIGVNSV  155 (299)
T ss_pred             cCCCchhh-----------hhhhhhhcccceeecccccccceEEEEeeCCCcEEEEEEcCCCCccchhhhhcccccccee
Confidence            76543221           1122346677999999996  557899999999999987644 1  223456788999999


Q ss_pred             EEcCC---C----------CcEEEEEeCCCeEEEEeCCCCe--eEEEeecccccEEEEEEcCCC----CeEEEEeCCCcE
Q 021247          207 VYSPV---D----------PRVLFSASDDTHVHMYDAEGKS--LVTAMSGHASWVLSVDASPDG----AAITTGSSDRTV  267 (315)
Q Consensus       207 ~~~~~---~----------~~~l~s~~~d~~i~~wd~~~~~--~~~~~~~~~~~i~~~~~~~~~----~~l~s~~~d~~i  267 (315)
                      .|.|.   +          .+.|++|+.|..++||+....+  .-..+.+|.+++..++|.|.-    .++++++.||+|
T Consensus       156 swapa~~~g~~~~~~~~~~~krlvSgGcDn~VkiW~~~~~~w~~e~~l~~H~dwVRDVAwaP~~gl~~s~iAS~SqDg~v  235 (299)
T KOG1332|consen  156 SWAPASAPGSLVDQGPAAKVKRLVSGGCDNLVKIWKFDSDSWKLERTLEGHKDWVRDVAWAPSVGLPKSTIASCSQDGTV  235 (299)
T ss_pred             eecCcCCCccccccCcccccceeeccCCccceeeeecCCcchhhhhhhhhcchhhhhhhhccccCCCceeeEEecCCCcE
Confidence            99884   1          1569999999999999987653  334588999999999999953    589999999999


Q ss_pred             EEEecCcc-ceeh--cccccccceEEEEEeeCCCEEEEEeCCCcEEEeec
Q 021247          268 KLWDLNMR-AAMQ--SMTNHTDQVWGVSFRPLGGRVVSVSDDKSISLYEY  314 (315)
Q Consensus       268 ~iwd~~~~-~~~~--~~~~~~~~v~~~~~s~~~~~l~s~~~d~~i~i~~~  314 (315)
                      .||-.+.. +..+  .+....+.++.+.||+.|+.|+.++.|..|.+|.-
T Consensus       236 iIwt~~~e~e~wk~tll~~f~~~~w~vSWS~sGn~LaVs~GdNkvtlwke  285 (299)
T KOG1332|consen  236 IIWTKDEEYEPWKKTLLEEFPDVVWRVSWSLSGNILAVSGGDNKVTLWKE  285 (299)
T ss_pred             EEEEecCccCcccccccccCCcceEEEEEeccccEEEEecCCcEEEEEEe
Confidence            99976521 1111  12223478999999999999999999999999963

>KOG0300 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.96  E-value=3e-28  Score=188.63  Aligned_cols=274  Identities=24%  Similarity=0.410  Sum_probs=218.8

Q ss_pred             EEEEeeCCCcEEEEcCCCCcceeeccccccceEEEEeCCCCCEEEEeeCCCeEEEEECCCCceeEEeeCCcccEEEEEEC
Q 021247           32 LLLTGSLDETVKLWRPDDMQLERTNTGHCLGVVSVAAHPSGIIAASASLDSFVRVFDVDTNASIATLEASPSEVWQMQFD  111 (315)
Q Consensus        32 ~l~sgs~d~~v~~w~~~~~~~~~~~~~h~~~v~~~~~~~~g~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~v~~~~~~  111 (315)
                      .+++.-.|++++      .++.+.+.||.++|..++....-.++.+++.|.+.++|.++++.|+.++.+|.+.|.+++|+
T Consensus       126 rivssFk~~t~~------~~lvre~~GHkDGiW~Vaa~~tqpi~gtASADhTA~iWs~Esg~CL~~Y~GH~GSVNsikfh  199 (481)
T KOG0300|consen  126 RIVSSFKDGTVK------FRLVRELEGHKDGIWHVAADSTQPICGTASADHTARIWSLESGACLATYTGHTGSVNSIKFH  199 (481)
T ss_pred             hheeeecCCcee------EeehhhhcccccceeeehhhcCCcceeecccccceeEEeeccccceeeecccccceeeEEec
Confidence            355555555543      34567788999999999988877899999999999999999999999999999999999999


Q ss_pred             CCCCeEEEEecCCCeEEEEecCCc-ceee-----eecC-------CC----------CCC----CCCCccCCCCcceEEE
Q 021247          112 PKGTTLAVAGGGSASVKLWDTATW-NLIA-----TLSI-------PR----------PEG----LKPTDKSSSKKFVLSV  164 (315)
Q Consensus       112 ~~~~~~~~~~~~d~~i~~~d~~~~-~~~~-----~~~~-------~~----------~~~----~~~~~~~~~~~~i~~~  164 (315)
                      +++. +++++++|++..||...-. +...     ....       ++          ..+    .+.....+|...|.++
T Consensus       200 ~s~~-L~lTaSGD~taHIW~~av~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~tiRvPl~~ltgH~~vV~a~  278 (481)
T KOG0300|consen  200 NSGL-LLLTASGDETAHIWKAAVNWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHTIRVPLMRLTGHRAVVSAC  278 (481)
T ss_pred             cccc-eEEEccCCcchHHHHHhhcCcCCCCCCCCCCCchhhhhcccccccccccccccCCceeeeeeeeeeccccceEeh
Confidence            9876 6678999999999973210 0000     0000       00          000    0011234567778888


Q ss_pred             EECCCCCEEEEecCCCcEEEEEcccceeeeeecCCccceEEEEEcCCCCcEEEEEeCCCeEEEEeCCCC-eeEEEeeccc
Q 021247          165 AWSPDGRRIACGSMDGTISVFDVTRAKFLHHLEGHFMPVRSLVYSPVDPRVLFSASDDTHVHMYDAEGK-SLVTAMSGHA  243 (315)
Q Consensus       165 ~~~~~~~~l~~~s~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~-~~~~~~~~~~  243 (315)
                      .|-..|+.+++++.|.+..+||++++..+..+.+|..+.+.+.-+| ..+++++++.|.+.++||.+.. ..+..+++|.
T Consensus       279 dWL~gg~Q~vTaSWDRTAnlwDVEtge~v~~LtGHd~ELtHcstHp-tQrLVvTsSrDtTFRLWDFReaI~sV~VFQGHt  357 (481)
T KOG0300|consen  279 DWLAGGQQMVTASWDRTANLWDVETGEVVNILTGHDSELTHCSTHP-TQRLVVTSSRDTTFRLWDFREAIQSVAVFQGHT  357 (481)
T ss_pred             hhhcCcceeeeeeccccceeeeeccCceeccccCcchhccccccCC-cceEEEEeccCceeEeccchhhcceeeeecccc
Confidence            9999999999999999999999999999999999999999888888 6789999999999999998843 4566789999


Q ss_pred             ccEEEEEEcCCCCeEEEEeCCCcEEEEecCc-cceehcccccccceEEEEEeeCCCEEEEEeCCCcEEEeecC
Q 021247          244 SWVLSVDASPDGAAITTGSSDRTVKLWDLNM-RAAMQSMTNHTDQVWGVSFRPLGGRVVSVSDDKSISLYEYS  315 (315)
Q Consensus       244 ~~i~~~~~~~~~~~l~s~~~d~~i~iwd~~~-~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~i~i~~~~  315 (315)
                      ..++++.|..+.+ +++|+.|.+|++||++. +.++.++.. ..+++.++.+..+..++.--+.+.|+|||++
T Consensus       358 dtVTS~vF~~dd~-vVSgSDDrTvKvWdLrNMRsplATIRt-dS~~NRvavs~g~~iIAiPhDNRqvRlfDln  428 (481)
T KOG0300|consen  358 DTVTSVVFNTDDR-VVSGSDDRTVKVWDLRNMRSPLATIRT-DSPANRVAVSKGHPIIAIPHDNRQVRLFDLN  428 (481)
T ss_pred             cceeEEEEecCCc-eeecCCCceEEEeeeccccCcceeeec-CCccceeEeecCCceEEeccCCceEEEEecC
Confidence            9999999997754 79999999999999976 456777654 3578889999877777777788999999975

>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]

Probab=99.96  E-value=2e-26  Score=178.26  Aligned_cols=245  Identities=17%  Similarity=0.223  Sum_probs=194.9

Q ss_pred             eeccccccceEEEEeCCCCCEEEEeeCCCeEEEEECCCCceeEEeeCCcccEEEEEECCCCCeEEEE-ecCCCeEEEEec
Q 021247           54 RTNTGHCLGVVSVAAHPSGIIAASASLDSFVRVFDVDTNASIATLEASPSEVWQMQFDPKGTTLAVA-GGGSASVKLWDT  132 (315)
Q Consensus        54 ~~~~~h~~~v~~~~~~~~g~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~-~~~d~~i~~~d~  132 (315)
                      +.+..-...|+++.|+++|..+++++.|.+++++|..++..+.++..+..-+..++|-...+.++.+ .-.|.+|+.-++
T Consensus         8 k~f~~~~~~i~sl~fs~~G~~litss~dDsl~LYd~~~g~~~~ti~skkyG~~~~~Fth~~~~~i~sStk~d~tIryLsl   87 (311)
T KOG1446|consen    8 KVFRETNGKINSLDFSDDGLLLITSSEDDSLRLYDSLSGKQVKTINSKKYGVDLACFTHHSNTVIHSSTKEDDTIRYLSL   87 (311)
T ss_pred             cccccCCCceeEEEecCCCCEEEEecCCCeEEEEEcCCCceeeEeecccccccEEEEecCCceEEEccCCCCCceEEEEe
Confidence            3344456689999999999999999999999999999999999988777777778876554544332 334889999999


Q ss_pred             CCcceeeeecCCCCCCCCCCccCCCCcceEEEEECCCCCEEEEecCCCcEEEEEcccceeeeeecCCccceEEEEEcCCC
Q 021247          133 ATWNLIATLSIPRPEGLKPTDKSSSKKFVLSVAWSPDGRRIACGSMDGTISVFDVTRAKFLHHLEGHFMPVRSLVYSPVD  212 (315)
Q Consensus       133 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~s~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~  212 (315)
                      .+.+.++-+.             +|+..|++++.+|-++.+++++.|++|++||++..++...+.....+  .++|.| .
T Consensus        88 ~dNkylRYF~-------------GH~~~V~sL~~sP~~d~FlS~S~D~tvrLWDlR~~~cqg~l~~~~~p--i~AfDp-~  151 (311)
T KOG1446|consen   88 HDNKYLRYFP-------------GHKKRVNSLSVSPKDDTFLSSSLDKTVRLWDLRVKKCQGLLNLSGRP--IAAFDP-E  151 (311)
T ss_pred             ecCceEEEcC-------------CCCceEEEEEecCCCCeEEecccCCeEEeeEecCCCCceEEecCCCc--ceeECC-C
Confidence            8877776663             56778999999999999999999999999999977665555443333  467888 5


Q ss_pred             CcEEEEEeCCCeEEEEeCCCC---ee-EEEee-cccccEEEEEEcCCCCeEEEEeCCCcEEEEecCccceehcccccccc
Q 021247          213 PRVLFSASDDTHVHMYDAEGK---SL-VTAMS-GHASWVLSVDASPDGAAITTGSSDRTVKLWDLNMRAAMQSMTNHTDQ  287 (315)
Q Consensus       213 ~~~l~s~~~d~~i~~wd~~~~---~~-~~~~~-~~~~~i~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~  287 (315)
                      +-+++.+.....|++||++..   .. .-.+. +.....+.+.|+|+|++++.+...+.+++.|.-.|....+++.+...
T Consensus       152 GLifA~~~~~~~IkLyD~Rs~dkgPF~tf~i~~~~~~ew~~l~FS~dGK~iLlsT~~s~~~~lDAf~G~~~~tfs~~~~~  231 (311)
T KOG1446|consen  152 GLIFALANGSELIKLYDLRSFDKGPFTTFSITDNDEAEWTDLEFSPDGKSILLSTNASFIYLLDAFDGTVKSTFSGYPNA  231 (311)
T ss_pred             CcEEEEecCCCeEEEEEecccCCCCceeEccCCCCccceeeeEEcCCCCEEEEEeCCCcEEEEEccCCcEeeeEeeccCC
Confidence            667777777779999998742   11 11122 33556789999999999999999999999999999988887776533


Q ss_pred             ---eEEEEEeeCCCEEEEEeCCCcEEEeec
Q 021247          288 ---VWGVSFRPLGGRVVSVSDDKSISLYEY  314 (315)
Q Consensus       288 ---v~~~~~s~~~~~l~s~~~d~~i~i~~~  314 (315)
                         .-+..|+|++++++++++||+|.+|+.
T Consensus       232 ~~~~~~a~ftPds~Fvl~gs~dg~i~vw~~  261 (311)
T KOG1446|consen  232 GNLPLSATFTPDSKFVLSGSDDGTIHVWNL  261 (311)
T ss_pred             CCcceeEEECCCCcEEEEecCCCcEEEEEc
Confidence               257899999999999999999999986

>KOG2096 consensus WD40 repeat protein [General function prediction only]

Probab=99.96  E-value=4.7e-27  Score=181.95  Aligned_cols=283  Identities=17%  Similarity=0.267  Sum_probs=202.8

Q ss_pred             hhhhccccceEEEEEeecCCCCCcEEEEeeCCCcEEEEcCCCCcce--eecc--ccccceEEEEeCCCCC-EEEEeeCCC
Q 021247            8 SVENAHEESVWAVTWVPATETRPALLLTGSLDETVKLWRPDDMQLE--RTNT--GHCLGVVSVAAHPSGI-IAASASLDS   82 (315)
Q Consensus         8 ~~~~~h~~~v~~v~~~~~~~~~~~~l~sgs~d~~v~~w~~~~~~~~--~~~~--~h~~~v~~~~~~~~g~-~l~s~~~d~   82 (315)
                      .++++|.++|++++|+.+++    .|+|++.|++|++|+.++....  +.+.  -.-+-.+.+.|.||.. .+++.-...
T Consensus        80 ~~LKgH~~~vt~~~FsSdGK----~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~nve~dhpT~V~FapDc~s~vv~~~~g~  155 (420)
T KOG2096|consen   80 SVLKGHKKEVTDVAFSSDGK----KLATISGDRSIRLWDVRDFENKEHRCIRQNVEYDHPTRVVFAPDCKSVVVSVKRGN  155 (420)
T ss_pred             hhhhccCCceeeeEEcCCCc----eeEEEeCCceEEEEecchhhhhhhhHhhccccCCCceEEEECCCcceEEEEEccCC
Confidence            56899999999999999887    5999999999999998754321  1111  0112467889999986 455666677


Q ss_pred             eEEEEECCCCce----e--EEe------eCCcccEEEEEECCCCCeEEEEecCCCeEEEEecCCcceeeeecCCCCCCCC
Q 021247           83 FVRVFDVDTNAS----I--ATL------EASPSEVWQMQFDPKGTTLAVAGGGSASVKLWDTATWNLIATLSIPRPEGLK  150 (315)
Q Consensus        83 ~i~~w~~~~~~~----~--~~~------~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~  150 (315)
                      ++++|.....+.    .  ...      +.|.-.+..+-.-..+ .++.+++.|..|.+|+++ ++.+..+.....    
T Consensus       156 ~l~vyk~~K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGiA~~~-k~imsas~dt~i~lw~lk-Gq~L~~idtnq~----  229 (420)
T KOG2096|consen  156 KLCVYKLVKKTDGSGSHHFVHIDNLEFERKHQVDIINIGIAGNA-KYIMSASLDTKICLWDLK-GQLLQSIDTNQS----  229 (420)
T ss_pred             EEEEEEeeecccCCCCcccccccccccchhcccceEEEeecCCc-eEEEEecCCCcEEEEecC-Cceeeeeccccc----
Confidence            899998654321    0  011      1122334444443333 456788999999999998 676666543221    


Q ss_pred             CCccCCCCcceEEEEECCCCCEEEEecCCCcEEEEEcc---cc-----eeeeeecCCccceEEEEEcCCCCcEEEEEeCC
Q 021247          151 PTDKSSSKKFVLSVAWSPDGRRIACGSMDGTISVFDVT---RA-----KFLHHLEGHFMPVRSLVYSPVDPRVLFSASDD  222 (315)
Q Consensus       151 ~~~~~~~~~~i~~~~~~~~~~~l~~~s~dg~i~i~d~~---~~-----~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d  222 (315)
                               .-...+.+|+|+++++++-...|++|.+-   .|     .....+++|...|..++|+| +...+++.+.|
T Consensus       230 ---------~n~~aavSP~GRFia~~gFTpDVkVwE~~f~kdG~fqev~rvf~LkGH~saV~~~aFsn-~S~r~vtvSkD  299 (420)
T KOG2096|consen  230 ---------SNYDAAVSPDGRFIAVSGFTPDVKVWEPIFTKDGTFQEVKRVFSLKGHQSAVLAAAFSN-SSTRAVTVSKD  299 (420)
T ss_pred             ---------cccceeeCCCCcEEEEecCCCCceEEEEEeccCcchhhhhhhheeccchhheeeeeeCC-CcceeEEEecC
Confidence                     13467899999999999988899999862   22     23456889999999999998 78899999999


Q ss_pred             CeEEEEeCCCC-------eeEEEe----ecccccEEEEEEcCCCCeEEEEeCCCcEEEEecCccceehccc-ccccceEE
Q 021247          223 THVHMYDAEGK-------SLVTAM----SGHASWVLSVDASPDGAAITTGSSDRTVKLWDLNMRAAMQSMT-NHTDQVWG  290 (315)
Q Consensus       223 ~~i~~wd~~~~-------~~~~~~----~~~~~~i~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~-~~~~~v~~  290 (315)
                      |++++||..-+       +.++..    ..-.+....++.+|+|+.|+.+ ....+.++..+.++...+++ .|++.|.+
T Consensus       300 G~wriwdtdVrY~~~qDpk~Lk~g~~pl~aag~~p~RL~lsP~g~~lA~s-~gs~l~~~~se~g~~~~~~e~~h~~~Is~  378 (420)
T KOG2096|consen  300 GKWRIWDTDVRYEAGQDPKILKEGSAPLHAAGSEPVRLELSPSGDSLAVS-FGSDLKVFASEDGKDYPELEDIHSTTISS  378 (420)
T ss_pred             CcEEEeeccceEecCCCchHhhcCCcchhhcCCCceEEEeCCCCcEEEee-cCCceEEEEcccCccchhHHHhhcCceee
Confidence            99999997532       111111    1112334489999999987754 45679999999888777664 48999999


Q ss_pred             EEEeeCCCEEEEEeCCCcEEEe
Q 021247          291 VSFRPLGGRVVSVSDDKSISLY  312 (315)
Q Consensus       291 ~~~s~~~~~l~s~~~d~~i~i~  312 (315)
                      ++|+++|++++++|+ +-++++
T Consensus       379 is~~~~g~~~atcGd-r~vrv~  399 (420)
T KOG2096|consen  379 ISYSSDGKYIATCGD-RYVRVI  399 (420)
T ss_pred             EEecCCCcEEeeecc-eeeeee
Confidence            999999999998875 555554

>KOG0646 consensus WD40 repeat protein [General function prediction only]

Probab=99.96  E-value=1.5e-27  Score=193.05  Aligned_cols=267  Identities=19%  Similarity=0.273  Sum_probs=206.1

Q ss_pred             EEEeeCCC-cEEEEcCCCCcceeecccc-ccceEEEEeCCCCCEEEEe-eCCCeEEEEECCCCceeEEeeCCcccEEEEE
Q 021247           33 LLTGSLDE-TVKLWRPDDMQLERTNTGH-CLGVVSVAAHPSGIIAASA-SLDSFVRVFDVDTNASIATLEASPSEVWQMQ  109 (315)
Q Consensus        33 l~sgs~d~-~v~~w~~~~~~~~~~~~~h-~~~v~~~~~~~~g~~l~s~-~~d~~i~~w~~~~~~~~~~~~~~~~~v~~~~  109 (315)
                      +.+++.|. ++.+||+.++....++++- ...-.++..- .+.+++++ .....+.+|.+...........-+++|.+++
T Consensus        10 ~sssS~d~~~~~~~dl~TGt~~~~ykg~~~a~~~sl~~l-~~~yllsaq~~rp~l~vw~i~k~~~~~q~~v~Pg~v~al~   88 (476)
T KOG0646|consen   10 CSSSSFDPINCIVWDLRTGTSLLQYKGSYLAQAASLTAL-NNEYLLSAQLKRPLLHVWEILKKDQVVQYIVLPGPVHALA   88 (476)
T ss_pred             EeccCCCCcceeEEecCCCceeEEecCcccccchhhhhh-chhheeeecccCccccccccCchhhhhhhcccccceeeee
Confidence            34445554 4899999988766665543 1111122111 12444444 4456799999987665554555678899999


Q ss_pred             ECCCCCeEEEEecCCCeEEEEecCCcceeeeecCCCCCCCCCCccCCCCcceEEEEECCCCCEEEEecCCCcEEEEEcc-
Q 021247          110 FDPKGTTLAVAGGGSASVKLWDTATWNLIATLSIPRPEGLKPTDKSSSKKFVLSVAWSPDGRRIACGSMDGTISVFDVT-  188 (315)
Q Consensus       110 ~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~s~dg~i~i~d~~-  188 (315)
                      -+|.|.++ ++|...+.+++|.+.+++++..+.             .|-..|+++.|+-||.+|++|++||.|.+|++. 
T Consensus        89 s~n~G~~l-~ag~i~g~lYlWelssG~LL~v~~-------------aHYQ~ITcL~fs~dgs~iiTgskDg~V~vW~l~~  154 (476)
T KOG0646|consen   89 SSNLGYFL-LAGTISGNLYLWELSSGILLNVLS-------------AHYQSITCLKFSDDGSHIITGSKDGAVLVWLLTD  154 (476)
T ss_pred             cCCCceEE-EeecccCcEEEEEeccccHHHHHH-------------hhccceeEEEEeCCCcEEEecCCCccEEEEEEEe
Confidence            99998755 566688999999999998876653             344459999999999999999999999999862 


Q ss_pred             --------cceeeeeecCCccceEEEEEcCC-CCcEEEEEeCCCeEEEEeCCCCeeEEEeecccccEEEEEEcCCCCeEE
Q 021247          189 --------RAKFLHHLEGHFMPVRSLVYSPV-DPRVLFSASDDTHVHMYDAEGKSLVTAMSGHASWVLSVDASPDGAAIT  259 (315)
Q Consensus       189 --------~~~~~~~~~~~~~~v~~~~~~~~-~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~  259 (315)
                              +-+++..+..|..+|+++...+- -..++++++.|.++++||+..+.++.... ....|.+++.+|-++.+.
T Consensus       155 lv~a~~~~~~~p~~~f~~HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g~LLlti~-fp~si~av~lDpae~~~y  233 (476)
T KOG0646|consen  155 LVSADNDHSVKPLHIFSDHTLSITDLQIGSGGTNARLYTASEDRTIKLWDLSLGVLLLTIT-FPSSIKAVALDPAERVVY  233 (476)
T ss_pred             ecccccCCCccceeeeccCcceeEEEEecCCCccceEEEecCCceEEEEEeccceeeEEEe-cCCcceeEEEcccccEEE
Confidence                    33567788899999999988763 23589999999999999999998876654 356789999999999999


Q ss_pred             EEeCCCcEEEEecCccc----------------eehccccccc--ceEEEEEeeCCCEEEEEeCCCcEEEeecC
Q 021247          260 TGSSDRTVKLWDLNMRA----------------AMQSMTNHTD--QVWGVSFRPLGGRVVSVSDDKSISLYEYS  315 (315)
Q Consensus       260 s~~~d~~i~iwd~~~~~----------------~~~~~~~~~~--~v~~~~~s~~~~~l~s~~~d~~i~i~~~~  315 (315)
                      .|+.+|.|.+.++....                ....+.+|++  +|++++++.||..|++|+.||+++|||..
T Consensus       234 iGt~~G~I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~~~Gh~~~~~ITcLais~DgtlLlSGd~dg~VcvWdi~  307 (476)
T KOG0646|consen  234 IGTEEGKIFQNLLFKLSGQSAGVNQKGRHEENTQINVLVGHENESAITCLAISTDGTLLLSGDEDGKVCVWDIY  307 (476)
T ss_pred             ecCCcceEEeeehhcCCcccccccccccccccceeeeeccccCCcceeEEEEecCccEEEeeCCCCCEEEEecc
Confidence            99999999988875322                2334567887  99999999999999999999999999963

>KOG1408 consensus WD40 repeat protein [Function unknown]

Probab=99.96  E-value=3.2e-27  Score=200.48  Aligned_cols=285  Identities=21%  Similarity=0.356  Sum_probs=209.8

Q ss_pred             cEEEEeeCCCcEEEEcCCCCcceeecc---------------ccc---------cceEEEEeCCCCCEEEEeeCCCeEEE
Q 021247           31 ALLLTGSLDETVKLWRPDDMQLERTNT---------------GHC---------LGVVSVAAHPSGIIAASASLDSFVRV   86 (315)
Q Consensus        31 ~~l~sgs~d~~v~~w~~~~~~~~~~~~---------------~h~---------~~v~~~~~~~~g~~l~s~~~d~~i~~   86 (315)
                      .+|+.|+.+|.|++|++++.....+++               .|.         ....++.|++....+.+.-.|..+++
T Consensus       271 r~I~cgCa~g~vrlFnp~tL~y~~Tlpr~halg~d~a~~~q~~~~~s~~~~a~fPD~IA~~Fdet~~klscVYndhSlYv  350 (1080)
T KOG1408|consen  271 RLIACGCAKGMVRLFNPETLDYAGTLPRSHALGSDTANLSQPEPKNSESSPAIFPDAIACQFDETTDKLSCVYNDHSLYV  350 (1080)
T ss_pred             ceEEEeeccceeeecCcchhhhccccccccccccchhhcccccccccccCcccCCceeEEEecCCCceEEEEEcCceEEE
Confidence            479999999999999987644322211               111         12457789999999999999999999


Q ss_pred             EECCCCcee---EEeeCCcccEEEEEECCC----------CCeEEEEecCCCeEEEEecCCcc--eeeeecC--------
Q 021247           87 FDVDTNASI---ATLEASPSEVWQMQFDPK----------GTTLAVAGGGSASVKLWDTATWN--LIATLSI--------  143 (315)
Q Consensus        87 w~~~~~~~~---~~~~~~~~~v~~~~~~~~----------~~~~~~~~~~d~~i~~~d~~~~~--~~~~~~~--------  143 (315)
                      ||+++-..+   ..+-.|...||.+.--|-          ...-+++++.|++|++||+....  .+...++        
T Consensus       351 WDvrD~~kvgk~~s~lyHS~ciW~Ve~~p~nv~~~~~aclp~~cF~TCSsD~TIRlW~l~~ctnn~vyrRNils~~l~ki  430 (1080)
T KOG1408|consen  351 WDVRDVNKVGKCSSMLYHSACIWDVENLPCNVHSPTAACLPRGCFTTCSSDGTIRLWDLAFCTNNQVYRRNILSANLSKI  430 (1080)
T ss_pred             EeccccccccceeeeeeccceeeeeccccccccCcccccCCccceeEecCCCcEEEeecccccccceeecccchhhhhcC
Confidence            999875433   233456677887765441          01235789999999999997521  1100000        


Q ss_pred             CCC---------CCCCC-----CccCCCCcceEEEEECCCCCEEEEecCCCcEEEEEcccceeeeeecCCccceEEEEEc
Q 021247          144 PRP---------EGLKP-----TDKSSSKKFVLSVAWSPDGRRIACGSMDGTISVFDVTRAKFLHHLEGHFMPVRSLVYS  209 (315)
Q Consensus       144 ~~~---------~~~~~-----~~~~~~~~~i~~~~~~~~~~~l~~~s~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~  209 (315)
                      +..         .....     ......+..+++++.+|+|++||+|-.-|.+++||+...+....+..|..+|.++.|+
T Consensus       431 ~y~d~~~q~~~d~~~~~fdka~~s~~d~r~G~R~~~vSp~gqhLAsGDr~GnlrVy~Lq~l~~~~~~eAHesEilcLeyS  510 (1080)
T KOG1408|consen  431 PYEDSTQQIMHDASAGIFDKALVSTCDSRFGFRALAVSPDGQHLASGDRGGNLRVYDLQELEYTCFMEAHESEILCLEYS  510 (1080)
T ss_pred             ccccCchhhhhhccCCcccccchhhcCcccceEEEEECCCcceecccCccCceEEEEehhhhhhhheecccceeEEEeec
Confidence            000         00000     0011234458999999999999999999999999999999999999999999999998


Q ss_pred             CC--CCcEEEEEeCCCeEEEEeCCCC-eeEEEeecccc------------------------------------------
Q 021247          210 PV--DPRVLFSASDDTHVHMYDAEGK-SLVTAMSGHAS------------------------------------------  244 (315)
Q Consensus       210 ~~--~~~~l~s~~~d~~i~~wd~~~~-~~~~~~~~~~~------------------------------------------  244 (315)
                      ..  ..++|++++.|+.|++||.... .++..+.+|..                                          
T Consensus       511 ~p~~~~kLLASasrdRlIHV~Dv~rny~l~qtld~HSssITsvKFa~~gln~~MiscGADksimFr~~qk~~~g~~f~r~  590 (1080)
T KOG1408|consen  511 FPVLTNKLLASASRDRLIHVYDVKRNYDLVQTLDGHSSSITSVKFACNGLNRKMISCGADKSIMFRVNQKASSGRLFPRH  590 (1080)
T ss_pred             CchhhhHhhhhccCCceEEEEecccccchhhhhcccccceeEEEEeecCCceEEEeccCchhhheehhccccCceecccc
Confidence            53  3468999999999999997532 22222333333                                          


Q ss_pred             -------cEEEEEEcCCCCeEEEEeCCCcEEEEecCccceehcccc---cccceEEEEEeeCCCEEEEEeCCCcEEEeec
Q 021247          245 -------WVLSVDASPDGAAITTGSSDRTVKLWDLNMRAAMQSMTN---HTDQVWGVSFRPLGGRVVSVSDDKSISLYEY  314 (315)
Q Consensus       245 -------~i~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~---~~~~v~~~~~s~~~~~l~s~~~d~~i~i~~~  314 (315)
                             .+.+++..|..+++++++.|+.|+||++.+++..+.+.+   |++....+.+.|.|.||++.+.|+++.+|||
T Consensus       591 t~t~~ktTlYDm~Vdp~~k~v~t~cQDrnirif~i~sgKq~k~FKgs~~~eG~lIKv~lDPSgiY~atScsdktl~~~Df  670 (1080)
T KOG1408|consen  591 TQTLSKTTLYDMAVDPTSKLVVTVCQDRNIRIFDIESGKQVKSFKGSRDHEGDLIKVILDPSGIYLATSCSDKTLCFVDF  670 (1080)
T ss_pred             ccccccceEEEeeeCCCcceEEEEecccceEEEeccccceeeeecccccCCCceEEEEECCCccEEEEeecCCceEEEEe
Confidence                   345667777778999999999999999999988877754   6677889999999999999999999999998


Q ss_pred             C
Q 021247          315 S  315 (315)
Q Consensus       315 ~  315 (315)
                      .
T Consensus       671 ~  671 (1080)
T KOG1408|consen  671 V  671 (1080)
T ss_pred             c
Confidence            4

>KOG1539 consensus WD repeat protein [General function prediction only]

Probab=99.96  E-value=1.2e-26  Score=199.82  Aligned_cols=293  Identities=18%  Similarity=0.260  Sum_probs=242.8

Q ss_pred             eEEEEEeecCCCCCcEEEEeeCCCcEEEEcCCCCcceeeccccccceEEEEeCCCCCEEEEeeCCCeEEEEECCCCceeE
Q 021247           17 VWAVTWVPATETRPALLLTGSLDETVKLWRPDDMQLERTNTGHCLGVVSVAAHPSGIIAASASLDSFVRVFDVDTNASIA   96 (315)
Q Consensus        17 v~~v~~~~~~~~~~~~l~sgs~d~~v~~w~~~~~~~~~~~~~h~~~v~~~~~~~~g~~l~s~~~d~~i~~w~~~~~~~~~   96 (315)
                      |+++. .|+.. . +-++.|+.+|.+++|+..++++..+++++...|+++--+|-=..++.|-.+|+|.++|++.++.+.
T Consensus       162 Ital~-HP~TY-L-NKIvvGs~~G~lql~Nvrt~K~v~~f~~~~s~IT~ieqsPaLDVVaiG~~~G~ViifNlK~dkil~  238 (910)
T KOG1539|consen  162 ITALL-HPSTY-L-NKIVVGSSQGRLQLWNVRTGKVVYTFQEFFSRITAIEQSPALDVVAIGLENGTVIIFNLKFDKILM  238 (910)
T ss_pred             eeeEe-cchhh-e-eeEEEeecCCcEEEEEeccCcEEEEecccccceeEeccCCcceEEEEeccCceEEEEEcccCcEEE
Confidence            66664 34442 2 358899999999999999999999999999999999999988899999999999999999999999


Q ss_pred             EeeCCcccEEEEEECCCCCeEEEEecCCCeEEEEecCCcceeeeec--------------------------------CC
Q 021247           97 TLEASPSEVWQMQFDPKGTTLAVAGGGSASVKLWDTATWNLIATLS--------------------------------IP  144 (315)
Q Consensus        97 ~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~--------------------------------~~  144 (315)
                      +++..-++|..++|..+|+.++++|...|.+.+||+...+.+....                                .+
T Consensus       239 sFk~d~g~VtslSFrtDG~p~las~~~~G~m~~wDLe~kkl~~v~~nah~~sv~~~~fl~~epVl~ta~~DnSlk~~vfD  318 (910)
T KOG1539|consen  239 SFKQDWGRVTSLSFRTDGNPLLASGRSNGDMAFWDLEKKKLINVTRNAHYGSVTGATFLPGEPVLVTAGADNSLKVWVFD  318 (910)
T ss_pred             EEEccccceeEEEeccCCCeeEEeccCCceEEEEEcCCCeeeeeeeccccCCcccceecCCCceEeeccCCCceeEEEee
Confidence            9998779999999999999999999999999999997543221110                                00


Q ss_pred             CCC----------------------------------------------------------------CC--------CC-
Q 021247          145 RPE----------------------------------------------------------------GL--------KP-  151 (315)
Q Consensus       145 ~~~----------------------------------------------------------------~~--------~~-  151 (315)
                      .+.                                                                +.        ++ 
T Consensus       319 ~~dg~pR~LR~R~GHs~Pp~~irfy~~~g~~ilsa~~Drt~r~fs~~~e~~~~~l~~~~~~~~~kk~~~~~~~~~k~p~i  398 (910)
T KOG1539|consen  319 SGDGVPRLLRSRGGHSAPPSCIRFYGSQGHFILSAKQDRTLRSFSVISESQSQELGQLHNKKRAKKVNVFSTEKLKLPPI  398 (910)
T ss_pred             CCCCcchheeeccCCCCCchheeeeccCcEEEEecccCcchhhhhhhHHHHhHhhcccccccccccccccchhhhcCCcc
Confidence            000                                                                00        00 


Q ss_pred             -------------------------------------------CccCCCCcceEEEEECCCCCEEEEecCCCcEEEEEcc
Q 021247          152 -------------------------------------------TDKSSSKKFVLSVAWSPDGRRIACGSMDGTISVFDVT  188 (315)
Q Consensus       152 -------------------------------------------~~~~~~~~~i~~~~~~~~~~~l~~~s~dg~i~i~d~~  188 (315)
                                                                 .........+++++.++.|++.+.|+..|.|-+|++.
T Consensus       399 ~~fa~~~~RE~~W~Nv~~~h~~~~~~~tW~~~n~~~G~~~L~~~~~~~~~~~~~av~vs~CGNF~~IG~S~G~Id~fNmQ  478 (910)
T KOG1539|consen  399 VEFAFENAREKEWDNVITAHKGKRSAYTWNFRNKTSGRHVLDPKRFKKDDINATAVCVSFCGNFVFIGYSKGTIDRFNMQ  478 (910)
T ss_pred             eeeecccchhhhhcceeEEecCcceEEEEeccCcccccEEecCccccccCcceEEEEEeccCceEEEeccCCeEEEEEcc
Confidence                                                       0000011235688999999999999999999999999


Q ss_pred             cceeeeee---cCCccceEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCeeEEEeecccccEEEEEEcCCCCeEEEEeCCC
Q 021247          189 RAKFLHHL---EGHFMPVRSLVYSPVDPRVLFSASDDTHVHMYDAEGKSLVTAMSGHASWVLSVDASPDGAAITTGSSDR  265 (315)
Q Consensus       189 ~~~~~~~~---~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~d~  265 (315)
                      .+.....+   ..|..+|+.++... -.+.+++++.+|.+++||.+...++..+.- ...+..+..+....+++.+..|-
T Consensus       479 SGi~r~sf~~~~ah~~~V~gla~D~-~n~~~vsa~~~Gilkfw~f~~k~l~~~l~l-~~~~~~iv~hr~s~l~a~~~ddf  556 (910)
T KOG1539|consen  479 SGIHRKSFGDSPAHKGEVTGLAVDG-TNRLLVSAGADGILKFWDFKKKVLKKSLRL-GSSITGIVYHRVSDLLAIALDDF  556 (910)
T ss_pred             cCeeecccccCccccCceeEEEecC-CCceEEEccCcceEEEEecCCcceeeeecc-CCCcceeeeeehhhhhhhhcCce
Confidence            99888777   48999999999875 456899999999999999998887776653 33466777777777899999999


Q ss_pred             cEEEEecCccceehcccccccceEEEEEeeCCCEEEEEeCCCcEEEeec
Q 021247          266 TVKLWDLNMRAAMQSMTNHTDQVWGVSFRPLGGRVVSVSDDKSISLYEY  314 (315)
Q Consensus       266 ~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~i~i~~~  314 (315)
                      .|+++|..+++..+.+.+|++.|++++|||||++|++++.|++||+||+
T Consensus       557 ~I~vvD~~t~kvvR~f~gh~nritd~~FS~DgrWlisasmD~tIr~wDl  605 (910)
T KOG1539|consen  557 SIRVVDVVTRKVVREFWGHGNRITDMTFSPDGRWLISASMDSTIRTWDL  605 (910)
T ss_pred             eEEEEEchhhhhhHHhhccccceeeeEeCCCCcEEEEeecCCcEEEEec
Confidence            9999999999999999999999999999999999999999999999997

>KOG0269 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.96  E-value=7.8e-29  Score=211.58  Aligned_cols=243  Identities=21%  Similarity=0.284  Sum_probs=197.8

Q ss_pred             ceEEEEEeecCCCCCcEEEEeeCCCcEEEEcCCC---CcceeeccccccceEEEEeCCCC-CEEEEeeCCCeEEEEECCC
Q 021247           16 SVWAVTWVPATETRPALLLTGSLDETVKLWRPDD---MQLERTNTGHCLGVVSVAAHPSG-IIAASASLDSFVRVFDVDT   91 (315)
Q Consensus        16 ~v~~v~~~~~~~~~~~~l~sgs~d~~v~~w~~~~---~~~~~~~~~h~~~v~~~~~~~~g-~~l~s~~~d~~i~~w~~~~   91 (315)
                      .+..|.|....   ..+|||++..|.|.+||+..   .++...+..|...+.++.|++.. .+|++|+.||+|+.||++.
T Consensus        89 S~~DVkW~~~~---~NlIAT~s~nG~i~vWdlnk~~rnk~l~~f~EH~Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR~  165 (839)
T KOG0269|consen   89 SAADVKWGQLY---SNLIATCSTNGVISVWDLNKSIRNKLLTVFNEHERSANKLDFHSTEPNILISGSQDGTVKCWDLRS  165 (839)
T ss_pred             ehhhcccccch---hhhheeecCCCcEEEEecCccccchhhhHhhhhccceeeeeeccCCccEEEecCCCceEEEEeeec
Confidence            45567787433   35899999999999999876   44555678899999999999876 7889999999999999999


Q ss_pred             CceeEEeeCCcccEEEEEECCCCCeEEEEecCCCeEEEEecCCcceeeeecCCCCCCCCCCccCCCCcceEEEEECCCCC
Q 021247           92 NASIATLEASPSEVWQMQFDPKGTTLAVAGGGSASVKLWDTATWNLIATLSIPRPEGLKPTDKSSSKKFVLSVAWSPDGR  171 (315)
Q Consensus        92 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~  171 (315)
                      .....++......|..|+|+|...+.++++.+.|.+++||+|....            ...+...|..+|.|+.|+|++.
T Consensus       166 ~~S~~t~~~nSESiRDV~fsp~~~~~F~s~~dsG~lqlWDlRqp~r------------~~~k~~AH~GpV~c~nwhPnr~  233 (839)
T KOG0269|consen  166 KKSKSTFRSNSESIRDVKFSPGYGNKFASIHDSGYLQLWDLRQPDR------------CEKKLTAHNGPVLCLNWHPNRE  233 (839)
T ss_pred             ccccccccccchhhhceeeccCCCceEEEecCCceEEEeeccCchh------------HHHHhhcccCceEEEeecCCCc
Confidence            9998888888889999999998888889999999999999985321            1123456788899999999999


Q ss_pred             EEEEecCCCcEEEEEcccceeeeeecC-CccceEEEEEcCCCCcEEEEEeC--CCeEEEEeCCCCee-EEEeecccccEE
Q 021247          172 RIACGSMDGTISVFDVTRAKFLHHLEG-HFMPVRSLVYSPVDPRVLFSASD--DTHVHMYDAEGKSL-VTAMSGHASWVL  247 (315)
Q Consensus       172 ~l~~~s~dg~i~i~d~~~~~~~~~~~~-~~~~v~~~~~~~~~~~~l~s~~~--d~~i~~wd~~~~~~-~~~~~~~~~~i~  247 (315)
                      +||+|+.|+.|+|||....+......- ...++..++|-|..+..|++++.  |..|+|||++..-+ ...+..|...++
T Consensus       234 ~lATGGRDK~vkiWd~t~~~~~~~~tInTiapv~rVkWRP~~~~hLAtcsmv~dtsV~VWDvrRPYIP~~t~~eH~~~vt  313 (839)
T KOG0269|consen  234 WLATGGRDKMVKIWDMTDSRAKPKHTINTIAPVGRVKWRPARSYHLATCSMVVDTSVHVWDVRRPYIPYATFLEHTDSVT  313 (839)
T ss_pred             eeeecCCCccEEEEeccCCCccceeEEeecceeeeeeeccCccchhhhhhccccceEEEEeeccccccceeeeccCcccc
Confidence            999999999999999976554322222 24688999999988888888864  78999999986544 456788999999


Q ss_pred             EEEEcC-CCCeEEEEeCCCcEEEEecC
Q 021247          248 SVDASP-DGAAITTGSSDRTVKLWDLN  273 (315)
Q Consensus       248 ~~~~~~-~~~~l~s~~~d~~i~iwd~~  273 (315)
                      .++|.. +...+.++++|++|..=.++
T Consensus       314 ~i~W~~~d~~~l~s~sKD~tv~qh~~k  340 (839)
T KOG0269|consen  314 GIAWDSGDRINLWSCSKDGTVLQHLFK  340 (839)
T ss_pred             ceeccCCCceeeEeecCccHHHHhhhh
Confidence            999976 45578999999988544433

>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.96  E-value=6.2e-28  Score=180.23  Aligned_cols=254  Identities=23%  Similarity=0.283  Sum_probs=198.3

Q ss_pred             hhhhhccccceEEEEEeecCCCCCcEEEEeeCCCcEEEEcCCCC---cceeeccccccceEEEEeCC--CCCEEEEeeCC
Q 021247            7 KSVENAHEESVWAVTWVPATETRPALLLTGSLDETVKLWRPDDM---QLERTNTGHCLGVVSVAAHP--SGIIAASASLD   81 (315)
Q Consensus         7 ~~~~~~h~~~v~~v~~~~~~~~~~~~l~sgs~d~~v~~w~~~~~---~~~~~~~~h~~~v~~~~~~~--~g~~l~s~~~d   81 (315)
                      +.+...|++-|..+..--.+.    .|+|+|.|++|+|+...+.   ++..++.||.+||..+.|-.  .|.+|++++.|
T Consensus         4 q~idt~H~D~IHda~lDyygk----rlATcsSD~tVkIf~v~~n~~s~ll~~L~Gh~GPVwqv~wahPk~G~iLAScsYD   79 (299)
T KOG1332|consen    4 QTIDTQHEDMIHDAQLDYYGK----RLATCSSDGTVKIFEVRNNGQSKLLAELTGHSGPVWKVAWAHPKFGTILASCSYD   79 (299)
T ss_pred             eehhhhhhhhhhHhhhhhhcc----eeeeecCCccEEEEEEcCCCCceeeeEecCCCCCeeEEeecccccCcEeeEeecC
Confidence            456788999988887544443    6999999999999987653   45667899999999999854  89999999999


Q ss_pred             CeEEEEECCCCce--eEEeeCCcccEEEEEECCCC-CeEEEEecCCCeEEEEecCCcceeeeecCCCCCCCCCCccCCCC
Q 021247           82 SFVRVFDVDTNAS--IATLEASPSEVWQMQFDPKG-TTLAVAGGGSASVKLWDTATWNLIATLSIPRPEGLKPTDKSSSK  158 (315)
Q Consensus        82 ~~i~~w~~~~~~~--~~~~~~~~~~v~~~~~~~~~-~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~  158 (315)
                      |.|.||.-++++-  ......|...|++++|-|.+ ..++++++.||.|.+.+.+....-          ........|.
T Consensus        80 gkVIiWke~~g~w~k~~e~~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~w----------~t~ki~~aH~  149 (299)
T KOG1332|consen   80 GKVIIWKEENGRWTKAYEHAAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGGW----------TTSKIVFAHE  149 (299)
T ss_pred             ceEEEEecCCCchhhhhhhhhhcccceeecccccccceEEEEeeCCCcEEEEEEcCCCCc----------cchhhhhccc
Confidence            9999999888743  23456688899999999976 456678889999999887653110          0011123455


Q ss_pred             cceEEEEECCC---C-----------CEEEEecCCCcEEEEEccccee--eeeecCCccceEEEEEcCCC---CcEEEEE
Q 021247          159 KFVLSVAWSPD---G-----------RRIACGSMDGTISVFDVTRAKF--LHHLEGHFMPVRSLVYSPVD---PRVLFSA  219 (315)
Q Consensus       159 ~~i~~~~~~~~---~-----------~~l~~~s~dg~i~i~d~~~~~~--~~~~~~~~~~v~~~~~~~~~---~~~l~s~  219 (315)
                      ..+++++|.|.   |           +.|++|+.|..|++|+...++.  ...+.+|..-|++++|.|..   ...++++
T Consensus       150 ~GvnsVswapa~~~g~~~~~~~~~~~krlvSgGcDn~VkiW~~~~~~w~~e~~l~~H~dwVRDVAwaP~~gl~~s~iAS~  229 (299)
T KOG1332|consen  150 IGVNSVSWAPASAPGSLVDQGPAAKVKRLVSGGCDNLVKIWKFDSDSWKLERTLEGHKDWVRDVAWAPSVGLPKSTIASC  229 (299)
T ss_pred             cccceeeecCcCCCccccccCcccccceeeccCCccceeeeecCCcchhhhhhhhhcchhhhhhhhccccCCCceeeEEe
Confidence            55889999885   4           6799999999999999877643  34588999999999999964   3579999


Q ss_pred             eCCCeEEEEeCCCC--e-eEEEeecccccEEEEEEcCCCCeEEEEeCCCcEEEEecCc
Q 021247          220 SDDTHVHMYDAEGK--S-LVTAMSGHASWVLSVDASPDGAAITTGSSDRTVKLWDLNM  274 (315)
Q Consensus       220 ~~d~~i~~wd~~~~--~-~~~~~~~~~~~i~~~~~~~~~~~l~s~~~d~~i~iwd~~~  274 (315)
                      +.||++.||.....  + ....+......++.+.||+.|.+|+.++.|+.|.+|.-+.
T Consensus       230 SqDg~viIwt~~~e~e~wk~tll~~f~~~~w~vSWS~sGn~LaVs~GdNkvtlwke~~  287 (299)
T KOG1332|consen  230 SQDGTVIIWTKDEEYEPWKKTLLEEFPDVVWRVSWSLSGNILAVSGGDNKVTLWKENV  287 (299)
T ss_pred             cCCCcEEEEEecCccCcccccccccCCcceEEEEEeccccEEEEecCCcEEEEEEeCC
Confidence            99999999986532  1 1222344567899999999999999999999999997654

>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]

Probab=99.96  E-value=5.5e-27  Score=198.14  Aligned_cols=294  Identities=21%  Similarity=0.338  Sum_probs=224.3

Q ss_pred             hhhhhhccccceEEEEEeecCCCCCcEEEEeeCCCcEEEEcCCCCc-------ceeeccccccceEEEEeCCCCCEEEEe
Q 021247            6 LKSVENAHEESVWAVTWVPATETRPALLLTGSLDETVKLWRPDDMQ-------LERTNTGHCLGVVSVAAHPSGIIAASA   78 (315)
Q Consensus         6 ~~~~~~~h~~~v~~v~~~~~~~~~~~~l~sgs~d~~v~~w~~~~~~-------~~~~~~~h~~~v~~~~~~~~g~~l~s~   78 (315)
                      ++.++-||++.|+++.|.|...    .|+++|.|.++.+|.++...       ......|...+.....|+|+++.+++-
T Consensus       259 ~eall~GHeDWV~sv~W~p~~~----~LLSASaDksmiiW~pd~~tGiWv~~vRlGe~gg~a~GF~g~lw~~n~~~ii~~  334 (764)
T KOG1063|consen  259 FEALLMGHEDWVYSVWWHPEGL----DLLSASADKSMIIWKPDENTGIWVDVVRLGEVGGSAGGFWGGLWSPNSNVIIAH  334 (764)
T ss_pred             hhhhhcCcccceEEEEEccchh----hheecccCcceEEEecCCccceEEEEEEeecccccccceeeEEEcCCCCEEEEe
Confidence            5577789999999999999874    59999999999999987541       112234566788999999999999999


Q ss_pred             eCCCeEEEEECCCC-c--eeEEeeCCcccEEEEEECCCCCeEEEEecCCCeEEEEecCCcceeeeecCCCCCCCCCCccC
Q 021247           79 SLDSFVRVFDVDTN-A--SIATLEASPSEVWQMQFDPKGTTLAVAGGGSASVKLWDTATWNLIATLSIPRPEGLKPTDKS  155 (315)
Q Consensus        79 ~~d~~i~~w~~~~~-~--~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~  155 (315)
                      +.-|..++|..++. .  ....+.+|.+.|.+++|+|.|.++ ++.+.|.+-|++-.-. +...--.+.+|+        
T Consensus       335 g~~Gg~hlWkt~d~~~w~~~~~iSGH~~~V~dv~W~psGefl-Lsvs~DQTTRlFa~wg-~q~~wHEiaRPQ--------  404 (764)
T KOG1063|consen  335 GRTGGFHLWKTKDKTFWTQEPVISGHVDGVKDVDWDPSGEFL-LSVSLDQTTRLFARWG-RQQEWHEIARPQ--------  404 (764)
T ss_pred             cccCcEEEEeccCccceeeccccccccccceeeeecCCCCEE-EEeccccceeeecccc-cccceeeecccc--------
Confidence            99999999993332 1  223457788999999999999966 5667899988876431 111100111111        


Q ss_pred             CCCcceEEEEECCCCCEEEEecCCCcEEEEEccc-------------------------------------------ce-
Q 021247          156 SSKKFVLSVAWSPDGRRIACGSMDGTISVFDVTR-------------------------------------------AK-  191 (315)
Q Consensus       156 ~~~~~i~~~~~~~~~~~l~~~s~dg~i~i~d~~~-------------------------------------------~~-  191 (315)
                      .|..-++|+++-+....|++|..+.-+++|+...                                           +. 
T Consensus       405 iHGyDl~c~~~vn~~~~FVSgAdEKVlRvF~aPk~fv~~l~~i~g~~~~~~~~~p~gA~VpaLGLSnKa~~~~e~~~G~~  484 (764)
T KOG1063|consen  405 IHGYDLTCLSFVNEDLQFVSGADEKVLRVFEAPKSFVKSLMAICGKCFKGSDELPDGANVPALGLSNKAFFPGETNTGGE  484 (764)
T ss_pred             cccccceeeehccCCceeeecccceeeeeecCcHHHHHHHHHHhCccccCchhcccccccccccccCCCCcccccccccc
Confidence            1223367777777666777887777788876311                                           00 


Q ss_pred             --------------------------------eeeeecCCccceEEEEEcCCCCcEEEEEeCCC-----eEEEEeCCCCe
Q 021247          192 --------------------------------FLHHLEGHFMPVRSLVYSPVDPRVLFSASDDT-----HVHMYDAEGKS  234 (315)
Q Consensus       192 --------------------------------~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~-----~i~~wd~~~~~  234 (315)
                                                      .++++.+|...|.+++.+| .+++++++....     -|++|+.....
T Consensus       485 ~~~~~et~~~~~p~~L~ePP~EdqLq~~tLwPEv~KLYGHGyEv~~l~~s~-~gnliASaCKS~~~ehAvI~lw~t~~W~  563 (764)
T KOG1063|consen  485 AAVCAETPLAAAPCELTEPPTEDQLQQNTLWPEVHKLYGHGYEVYALAISP-TGNLIASACKSSLKEHAVIRLWNTANWL  563 (764)
T ss_pred             cceeeecccccCchhccCCChHHHHHHhccchhhHHhccCceeEEEEEecC-CCCEEeehhhhCCccceEEEEEeccchh
Confidence                                            0113458888999999998 678999887643     48999999888


Q ss_pred             eEEEeecccccEEEEEEcCCCCeEEEEeCCCcEEEEecCccc----eehcccccccceEEEEEeeCCCEEEEEeCCCcEE
Q 021247          235 LVTAMSGHASWVLSVDASPDGAAITTGSSDRTVKLWDLNMRA----AMQSMTNHTDQVWGVSFRPLGGRVVSVSDDKSIS  310 (315)
Q Consensus       235 ~~~~~~~~~~~i~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~----~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~i~  310 (315)
                      .++.+.+|.-.|+.++|||++++|++.+.|+++.+|......    .......|+.-||++.|+|+.++++|+|.|++|+
T Consensus       564 ~~~~L~~HsLTVT~l~FSpdg~~LLsvsRDRt~sl~~~~~~~~~e~~fa~~k~HtRIIWdcsW~pde~~FaTaSRDK~Vk  643 (764)
T KOG1063|consen  564 QVQELEGHSLTVTRLAFSPDGRYLLSVSRDRTVSLYEVQEDIKDEFRFACLKAHTRIIWDCSWSPDEKYFATASRDKKVK  643 (764)
T ss_pred             hhheecccceEEEEEEECCCCcEEEEeecCceEEeeeeecccchhhhhccccccceEEEEcccCcccceeEEecCCceEE
Confidence            888899999999999999999999999999999999874322    1233568999999999999999999999999999


Q ss_pred             Eeec
Q 021247          311 LYEY  314 (315)
Q Consensus       311 i~~~  314 (315)
                      +|..
T Consensus       644 VW~~  647 (764)
T KOG1063|consen  644 VWEE  647 (764)
T ss_pred             EEec
Confidence            9975

>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.96  E-value=1.1e-26  Score=178.94  Aligned_cols=254  Identities=18%  Similarity=0.380  Sum_probs=187.0

Q ss_pred             ccccccceEEEEeCCCCCEEEEeeCCCeEEEEECCCCc----eeEEeeCCcccEEEEEEC-CCCCeEEEEecCCCeEEEE
Q 021247           56 NTGHCLGVVSVAAHPSGIIAASASLDSFVRVFDVDTNA----SIATLEASPSEVWQMQFD-PKGTTLAVAGGGSASVKLW  130 (315)
Q Consensus        56 ~~~h~~~v~~~~~~~~g~~l~s~~~d~~i~~w~~~~~~----~~~~~~~~~~~v~~~~~~-~~~~~~~~~~~~d~~i~~~  130 (315)
                      ..+|.+-|.++.|.+.|..+++++.|++++|||.+...    +....+.|.+.|+.+.|- |.-..++++++.|+++.||
T Consensus         9 ~s~h~DlihdVs~D~~GRRmAtCSsDq~vkI~d~~~~s~~W~~Ts~Wrah~~Si~rV~WAhPEfGqvvA~cS~Drtv~iW   88 (361)
T KOG2445|consen    9 DSGHKDLIHDVSFDFYGRRMATCSSDQTVKIWDSTSDSGTWSCTSSWRAHDGSIWRVVWAHPEFGQVVATCSYDRTVSIW   88 (361)
T ss_pred             ccCCcceeeeeeecccCceeeeccCCCcEEEEeccCCCCceEEeeeEEecCCcEEEEEecCccccceEEEEecCCceeee
Confidence            35788999999999999999999999999999976543    445678899999999995 5445678899999999999


Q ss_pred             ecCCcceeeeecCCCCCCCCCCccCCCCcceEEEEECCC--CCEEEEecCCCcEEEEEcccce------eeeeec-----
Q 021247          131 DTATWNLIATLSIPRPEGLKPTDKSSSKKFVLSVAWSPD--GRRIACGSMDGTISVFDVTRAK------FLHHLE-----  197 (315)
Q Consensus       131 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~--~~~l~~~s~dg~i~i~d~~~~~------~~~~~~-----  197 (315)
                      .-...+..    .+...-.+.......+..|+.+.|.|.  |-.+++++.||.++||+.....      ....+.     
T Consensus        89 EE~~~~~~----~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs~W~Lq~Ei~~~~~p  164 (361)
T KOG2445|consen   89 EEQEKSEE----AHGRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNLSQWTLQHEIQNVIDP  164 (361)
T ss_pred             eecccccc----cccceeEEEEEeecCCcceeEEEecchhcceEEEEeccCcEEEEEecCCccccccchhhhhhhhccCC
Confidence            75211000    000000000111223445899999994  7789999999999999864221      112222     


Q ss_pred             --CCccceEEEEEcCC--CCcEEEEEeCC-----CeEEEEeCCCC----eeEEEeecccccEEEEEEcCC-C---CeEEE
Q 021247          198 --GHFMPVRSLVYSPV--DPRVLFSASDD-----THVHMYDAEGK----SLVTAMSGHASWVLSVDASPD-G---AAITT  260 (315)
Q Consensus       198 --~~~~~v~~~~~~~~--~~~~l~s~~~d-----~~i~~wd~~~~----~~~~~~~~~~~~i~~~~~~~~-~---~~l~s  260 (315)
                        .+..+..|+.|+|.  ...+|+.|+++     +.++||.....    ..+..+.+|..+|++++|.|+ |   .+||+
T Consensus       165 p~~~~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva~L~d~~dpI~di~wAPn~Gr~y~~lAv  244 (361)
T KOG2445|consen  165 PGKNKQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRKWLKVAELPDHTDPIRDISWAPNIGRSYHLLAV  244 (361)
T ss_pred             cccccCcceEEeeccccccCceEEEEcccCCccccceEEEEecCCcceeeeehhcCCCCCcceeeeeccccCCceeeEEE
Confidence              35567789999874  34577777776     46778865422    234567799999999999996 2   48999


Q ss_pred             EeCCCcEEEEecCcc--------------------ceehcccccccceEEEEEeeCCCEEEEEeCCCcEEEeec
Q 021247          261 GSSDRTVKLWDLNMR--------------------AAMQSMTNHTDQVWGVSFRPLGGRVVSVSDDKSISLYEY  314 (315)
Q Consensus       261 ~~~d~~i~iwd~~~~--------------------~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~i~i~~~  314 (315)
                      ++.|| |+||.+...                    +.+..+.+|..+||.+.|.--|..|++.|+||.||+|+-
T Consensus       245 A~kDg-v~I~~v~~~~s~i~~ee~~~~~~~~~l~v~~vs~~~~H~~~VWrv~wNmtGtiLsStGdDG~VRLWka  317 (361)
T KOG2445|consen  245 ATKDG-VRIFKVKVARSAIEEEEVLAPDLMTDLPVEKVSELDDHNGEVWRVRWNMTGTILSSTGDDGCVRLWKA  317 (361)
T ss_pred             eecCc-EEEEEEeeccchhhhhcccCCCCccccceEEeeeccCCCCceEEEEEeeeeeEEeecCCCceeeehhh
Confidence            99999 999998631                    123346789999999999999999999999999999963

>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]

Probab=99.96  E-value=2.8e-27  Score=198.16  Aligned_cols=296  Identities=22%  Similarity=0.309  Sum_probs=211.6

Q ss_pred             EEEEEeecCCCCCcEEEEeeCCCcEEEEcCCCCcce------eeccccccceEEEEeCCCCCEEEEeeCCCeEEEEECCC
Q 021247           18 WAVTWVPATETRPALLLTGSLDETVKLWRPDDMQLE------RTNTGHCLGVVSVAAHPSGIIAASASLDSFVRVFDVDT   91 (315)
Q Consensus        18 ~~v~~~~~~~~~~~~l~sgs~d~~v~~w~~~~~~~~------~~~~~h~~~v~~~~~~~~g~~l~s~~~d~~i~~w~~~~   91 (315)
                      ++..|++..+ ..-+|+.+..||.|.++|....+..      +....|..+|..+.+-|....|++++.|.++|+||++.
T Consensus        53 f~~sFs~~~n-~eHiLavadE~G~i~l~dt~~~~fr~ee~~lk~~~aH~nAifDl~wapge~~lVsasGDsT~r~Wdvk~  131 (720)
T KOG0321|consen   53 FADSFSAAPN-KEHILAVADEDGGIILFDTKSIVFRLEERQLKKPLAHKNAIFDLKWAPGESLLVSASGDSTIRPWDVKT  131 (720)
T ss_pred             ccccccCCCC-ccceEEEecCCCceeeecchhhhcchhhhhhcccccccceeEeeccCCCceeEEEccCCceeeeeeecc
Confidence            4577877654 3568999999999999997544332      44567999999999999667899999999999999999


Q ss_pred             CceeEE--eeCCcccEEEEEECCCCCeEEEEecCCCeEEEEecCCcceee------eecCCCCC---CCCCCcc-----C
Q 021247           92 NASIAT--LEASPSEVWQMQFDPKGTTLAVAGGGSASVKLWDTATWNLIA------TLSIPRPE---GLKPTDK-----S  155 (315)
Q Consensus        92 ~~~~~~--~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~------~~~~~~~~---~~~~~~~-----~  155 (315)
                      ...+..  +.+|...|-+++|.|.+..++++|+.||.|.|||++-.....      .+......   ...+..+     .
T Consensus       132 s~l~G~~~~~GH~~SvkS~cf~~~n~~vF~tGgRDg~illWD~R~n~~d~~e~~~~~~~~~~n~~ptpskp~~kr~~k~k  211 (720)
T KOG0321|consen  132 SRLVGGRLNLGHTGSVKSECFMPTNPAVFCTGGRDGEILLWDCRCNGVDALEEFDNRIYGRHNTAPTPSKPLKKRIRKWK  211 (720)
T ss_pred             ceeecceeecccccccchhhhccCCCcceeeccCCCcEEEEEEeccchhhHHHHhhhhhccccCCCCCCchhhccccccc
Confidence            887765  788999999999999999999999999999999997533110      00000001   1111100     1


Q ss_pred             CCCcceEE---EEECCCCCEEEEecC-CCcEEEEEcccceeeeee--------cCC---ccceEEEEEcCCCCcEEEEEe
Q 021247          156 SSKKFVLS---VAWSPDGRRIACGSM-DGTISVFDVTRAKFLHHL--------EGH---FMPVRSLVYSPVDPRVLFSAS  220 (315)
Q Consensus       156 ~~~~~i~~---~~~~~~~~~l~~~s~-dg~i~i~d~~~~~~~~~~--------~~~---~~~v~~~~~~~~~~~~l~s~~  220 (315)
                      .+...|.+   +.+..|...||+++. |+.|++||+++.......        ..|   ...+.++.....+.++++++.
T Consensus       212 A~s~ti~ssvTvv~fkDe~tlaSaga~D~~iKVWDLRk~~~~~r~ep~~~~~~~t~skrs~G~~nL~lDssGt~L~AsCt  291 (720)
T KOG0321|consen  212 AASNTIFSSVTVVLFKDESTLASAGAADSTIKVWDLRKNYTAYRQEPRGSDKYPTHSKRSVGQVNLILDSSGTYLFASCT  291 (720)
T ss_pred             cccCceeeeeEEEEEeccceeeeccCCCcceEEEeecccccccccCCCcccCccCcccceeeeEEEEecCCCCeEEEEec
Confidence            11122333   555567888888776 999999999876543221        122   223455555554555555555


Q ss_pred             CCCeEEEEeCCCC--eeEEEeeccccc--EEEEEEcCCCCeEEEEeCCCcEEEEecCccc-eehcccccccceEEEEEee
Q 021247          221 DDTHVHMYDAEGK--SLVTAMSGHASW--VLSVDASPDGAAITTGSSDRTVKLWDLNMRA-AMQSMTNHTDQVWGVSFRP  295 (315)
Q Consensus       221 ~d~~i~~wd~~~~--~~~~~~~~~~~~--i~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~-~~~~~~~~~~~v~~~~~s~  295 (315)
                       |+.|++|++.+.  ..+..+.++...  -..-..+|++.++++|+.|...++|.+...+ ....+.+|...|+.|+|.|
T Consensus       292 -D~sIy~ynm~s~s~sP~~~~sg~~~~sf~vks~lSpd~~~l~SgSsd~~ayiw~vs~~e~~~~~l~Ght~eVt~V~w~p  370 (720)
T KOG0321|consen  292 -DNSIYFYNMRSLSISPVAEFSGKLNSSFYVKSELSPDDCSLLSGSSDEQAYIWVVSSPEAPPALLLGHTREVTTVRWLP  370 (720)
T ss_pred             -CCcEEEEeccccCcCchhhccCcccceeeeeeecCCCCceEeccCCCcceeeeeecCccCChhhhhCcceEEEEEeecc
Confidence             999999998754  233333333211  1233479999999999999999999998754 4566789999999999998


Q ss_pred             CC-CEEEEEeCCCcEEEeecC
Q 021247          296 LG-GRVVSVSDDKSISLYEYS  315 (315)
Q Consensus       296 ~~-~~l~s~~~d~~i~i~~~~  315 (315)
                      .. ..++++++|-+++||+++
T Consensus       371 S~~t~v~TcSdD~~~kiW~l~  391 (720)
T KOG0321|consen  371 SATTPVATCSDDFRVKIWRLS  391 (720)
T ss_pred             ccCCCceeeccCcceEEEecc
Confidence            63 458888999999999863

>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]

Probab=99.96  E-value=3e-29  Score=212.62  Aligned_cols=253  Identities=26%  Similarity=0.411  Sum_probs=220.9

Q ss_pred             EEEeeCCCcEEEEcCCCCcceeeccccccceEEEEeCCCCCEEEEeeCCCeEEEEECCCCceeEEeeCCcccEEEEEECC
Q 021247           33 LLTGSLDETVKLWRPDDMQLERTNTGHCLGVVSVAAHPSGIIAASASLDSFVRVFDVDTNASIATLEASPSEVWQMQFDP  112 (315)
Q Consensus        33 l~sgs~d~~v~~w~~~~~~~~~~~~~h~~~v~~~~~~~~g~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~v~~~~~~~  112 (315)
                      +..+..+-.+++|+.      +.+..|...+.++..-..+..+++|+.|..+-+|.+.....+..+..|..+|.++.|++
T Consensus         7 ~m~~~~~t~Lr~~~~------~~~~~hsaav~~lk~~~s~r~~~~Gg~~~k~~L~~i~kp~~i~S~~~hespIeSl~f~~   80 (825)
T KOG0267|consen    7 LMKTKRATKLRVWDT------REFVAHSAAVGCLKIRKSSRSLVTGGEDEKVNLWAIGKPNAITSLTGHESPIESLTFDT   80 (825)
T ss_pred             cceeeeeeccccccc------hhhhhhhhhhceeeeeccceeeccCCCceeeccccccCCchhheeeccCCcceeeecCc
Confidence            444455566777764      33456888889998878889999999999999999998888888999999999999999


Q ss_pred             CCCeEEEEecCCCeEEEEecCCcceeeeecCCCCCCCCCCccCCCCcceEEEEECCCCCEEEEecCCCcEEEEEccccee
Q 021247          113 KGTTLAVAGGGSASVKLWDTATWNLIATLSIPRPEGLKPTDKSSSKKFVLSVAWSPDGRRIACGSMDGTISVFDVTRAKF  192 (315)
Q Consensus       113 ~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~s~dg~i~i~d~~~~~~  192 (315)
                      ... ++++|..+|+|++||+..++.+.++.             .|...+.++.|+|-+.+++.|+.|+.+.+||.+..-+
T Consensus        81 ~E~-LlaagsasgtiK~wDleeAk~vrtLt-------------gh~~~~~sv~f~P~~~~~a~gStdtd~~iwD~Rk~Gc  146 (825)
T KOG0267|consen   81 SER-LLAAGSASGTIKVWDLEEAKIVRTLT-------------GHLLNITSVDFHPYGEFFASGSTDTDLKIWDIRKKGC  146 (825)
T ss_pred             chh-hhcccccCCceeeeehhhhhhhhhhh-------------ccccCcceeeeccceEEeccccccccceehhhhccCc
Confidence            866 56788899999999999887776654             3444578999999999999999999999999997778


Q ss_pred             eeeecCCccceEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCeeEEEeecccccEEEEEEcCCCCeEEEEeCCCcEEEEec
Q 021247          193 LHHLEGHFMPVRSLVYSPVDPRVLFSASDDTHVHMYDAEGKSLVTAMSGHASWVLSVDASPDGAAITTGSSDRTVKLWDL  272 (315)
Q Consensus       193 ~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~d~~i~iwd~  272 (315)
                      ...+.+|...+..+.|+| ++++++++++|..+++||...+++...+..|.+.+..+.|+|..-++++|+.|++|++||+
T Consensus       147 ~~~~~s~~~vv~~l~lsP-~Gr~v~~g~ed~tvki~d~~agk~~~ef~~~e~~v~sle~hp~e~Lla~Gs~d~tv~f~dl  225 (825)
T KOG0267|consen  147 SHTYKSHTRVVDVLRLSP-DGRWVASGGEDNTVKIWDLTAGKLSKEFKSHEGKVQSLEFHPLEVLLAPGSSDRTVRFWDL  225 (825)
T ss_pred             eeeecCCcceeEEEeecC-CCceeeccCCcceeeeecccccccccccccccccccccccCchhhhhccCCCCceeeeecc
Confidence            888888999999999999 7889999999999999999999999999999999999999999999999999999999999


Q ss_pred             CccceehcccccccceEEEEEeeCCCEEEEEeCC
Q 021247          273 NMRAAMQSMTNHTDQVWGVSFRPLGGRVVSVSDD  306 (315)
Q Consensus       273 ~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d  306 (315)
                      ++.+.+.........|.+++|+|++..+++|..+
T Consensus       226 etfe~I~s~~~~~~~v~~~~fn~~~~~~~~G~q~  259 (825)
T KOG0267|consen  226 ETFEVISSGKPETDGVRSLAFNPDGKIVLSGEQI  259 (825)
T ss_pred             ceeEEeeccCCccCCceeeeecCCceeeecCchh
Confidence            9888777766667889999999999888877654

>KOG2055 consensus WD40 repeat protein [General function prediction only]

Probab=99.96  E-value=8.7e-27  Score=188.45  Aligned_cols=281  Identities=16%  Similarity=0.267  Sum_probs=218.4

Q ss_pred             ccceEEEEEeecCCCCCcEEEEeeCCCcEEEEcCCCCc--ceeeccccccceEEEEeCCCCC-EEEEeeCCCeEEEEECC
Q 021247           14 EESVWAVTWVPATETRPALLLTGSLDETVKLWRPDDMQ--LERTNTGHCLGVVSVAAHPSGI-IAASASLDSFVRVFDVD   90 (315)
Q Consensus        14 ~~~v~~v~~~~~~~~~~~~l~sgs~d~~v~~w~~~~~~--~~~~~~~h~~~v~~~~~~~~g~-~l~s~~~d~~i~~w~~~   90 (315)
                      ...|++|.|.|..+    ++++|+.|++++||..+...  .+..+.-...+|.+..|.|+|. .+++++.....+.||+.
T Consensus       213 ~~~I~sv~FHp~~p----lllvaG~d~~lrifqvDGk~N~~lqS~~l~~fPi~~a~f~p~G~~~i~~s~rrky~ysyDle  288 (514)
T KOG2055|consen  213 HGGITSVQFHPTAP----LLLVAGLDGTLRIFQVDGKVNPKLQSIHLEKFPIQKAEFAPNGHSVIFTSGRRKYLYSYDLE  288 (514)
T ss_pred             cCCceEEEecCCCc----eEEEecCCCcEEEEEecCccChhheeeeeccCccceeeecCCCceEEEecccceEEEEeecc
Confidence            46899999999765    79999999999999876432  2233333456899999999998 88899999999999998


Q ss_pred             CCceeEE--eeCC-cccEEEEEECCCCCeEEEEecCCCeEEEEecCCcceeeeecCCCCCCCCCCccCCCCcceEEEEEC
Q 021247           91 TNASIAT--LEAS-PSEVWQMQFDPKGTTLAVAGGGSASVKLWDTATWNLIATLSIPRPEGLKPTDKSSSKKFVLSVAWS  167 (315)
Q Consensus        91 ~~~~~~~--~~~~-~~~v~~~~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~  167 (315)
                      +.+....  ..+. ...+.....+|++++++ ..+..|.|.+--..+++.+.++.++.              .+..++|+
T Consensus       289 ~ak~~k~~~~~g~e~~~~e~FeVShd~~fia-~~G~~G~I~lLhakT~eli~s~KieG--------------~v~~~~fs  353 (514)
T KOG2055|consen  289 TAKVTKLKPPYGVEEKSMERFEVSHDSNFIA-IAGNNGHIHLLHAKTKELITSFKIEG--------------VVSDFTFS  353 (514)
T ss_pred             ccccccccCCCCcccchhheeEecCCCCeEE-EcccCceEEeehhhhhhhhheeeecc--------------EEeeEEEe
Confidence            8764332  1112 23455667789988665 45688999999998888887776532              38899999


Q ss_pred             CCCCEEEEecCCCcEEEEEcccceeeeeecCCcc-ceEEEEEcCCCCcEEEEEeCCCeEEEEeCCC------CeeEEEee
Q 021247          168 PDGRRIACGSMDGTISVFDVTRAKFLHHLEGHFM-PVRSLVYSPVDPRVLFSASDDTHVHMYDAEG------KSLVTAMS  240 (315)
Q Consensus       168 ~~~~~l~~~s~dg~i~i~d~~~~~~~~~~~~~~~-~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~------~~~~~~~~  240 (315)
                      .+++.|++++.+|.|.+||+++..++..+..... .-++++.++ ++.+|++|+..|.|.|||.++      .+.+..+.
T Consensus       354 Sdsk~l~~~~~~GeV~v~nl~~~~~~~rf~D~G~v~gts~~~S~-ng~ylA~GS~~GiVNIYd~~s~~~s~~PkPik~~d  432 (514)
T KOG2055|consen  354 SDSKELLASGGTGEVYVWNLRQNSCLHRFVDDGSVHGTSLCISL-NGSYLATGSDSGIVNIYDGNSCFASTNPKPIKTVD  432 (514)
T ss_pred             cCCcEEEEEcCCceEEEEecCCcceEEEEeecCccceeeeeecC-CCceEEeccCcceEEEeccchhhccCCCCchhhhh
Confidence            9999999999999999999999888777653211 224566666 678999999999999999653      23445555


Q ss_pred             cccccEEEEEEcCCCCeEEEEeC--CCcEEEEecCccceehcccc---cccceEEEEEeeCCCEEEEEeCCCcEEEeec
Q 021247          241 GHASWVLSVDASPDGAAITTGSS--DRTVKLWDLNMRAAMQSMTN---HTDQVWGVSFRPLGGRVVSVSDDKSISLYEY  314 (315)
Q Consensus       241 ~~~~~i~~~~~~~~~~~l~s~~~--d~~i~iwd~~~~~~~~~~~~---~~~~v~~~~~s~~~~~l~s~~~d~~i~i~~~  314 (315)
                      .-...|+++.|+|+.++|+.++.  +..+|+-.+.+......++.   .-+.|++++|||.+.++|.|..+|.+.||.+
T Consensus       433 NLtt~Itsl~Fn~d~qiLAiaS~~~knalrLVHvPS~TVFsNfP~~n~~vg~vtc~aFSP~sG~lAvGNe~grv~l~kL  511 (514)
T KOG2055|consen  433 NLTTAITSLQFNHDAQILAIASRVKKNALRLVHVPSCTVFSNFPTSNTKVGHVTCMAFSPNSGYLAVGNEAGRVHLFKL  511 (514)
T ss_pred             hhheeeeeeeeCcchhhhhhhhhccccceEEEeccceeeeccCCCCCCcccceEEEEecCCCceEEeecCCCceeeEee
Confidence            55678999999999998877664  66799998887665544433   3357999999999999999999999999986

>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]

Probab=99.96  E-value=3e-27  Score=193.62  Aligned_cols=257  Identities=21%  Similarity=0.309  Sum_probs=190.6

Q ss_pred             eeccccccceEEEEeCCCCCEEEEeeCCCeEEEEECCCCc----eeEEeeC-CcccEEEEEECCCCCeEEEEecCCCeEE
Q 021247           54 RTNTGHCLGVVSVAAHPSGIIAASASLDSFVRVFDVDTNA----SIATLEA-SPSEVWQMQFDPKGTTLAVAGGGSASVK  128 (315)
Q Consensus        54 ~~~~~h~~~v~~~~~~~~g~~l~s~~~d~~i~~w~~~~~~----~~~~~~~-~~~~v~~~~~~~~~~~~~~~~~~d~~i~  128 (315)
                      .++++|+..|.++.+.|.|..+++|+.|.+|++||+..-.    ....+.. ....|.+++|++.+..+++. ++..+.+
T Consensus       161 i~l~hgtk~Vsal~~Dp~GaR~~sGs~Dy~v~~wDf~gMdas~~~fr~l~P~E~h~i~sl~ys~Tg~~iLvv-sg~aqak  239 (641)
T KOG0772|consen  161 IQLKHGTKIVSALAVDPSGARFVSGSLDYTVKFWDFQGMDASMRSFRQLQPCETHQINSLQYSVTGDQILVV-SGSAQAK  239 (641)
T ss_pred             EeccCCceEEEEeeecCCCceeeeccccceEEEEecccccccchhhhccCcccccccceeeecCCCCeEEEE-ecCccee
Confidence            3457888999999999999999999999999999997532    2222222 23468999999999877654 4568999


Q ss_pred             EEecCCcceeeeecCCCCCCCCCCccCCCCcceEEEEECCCC-CEEEEecCCCcEEEEEccccee-eeee-----cCCcc
Q 021247          129 LWDTATWNLIATLSIPRPEGLKPTDKSSSKKFVLSVAWSPDG-RRIACGSMDGTISVFDVTRAKF-LHHL-----EGHFM  201 (315)
Q Consensus       129 ~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~l~~~s~dg~i~i~d~~~~~~-~~~~-----~~~~~  201 (315)
                      |+|-...+.........- -.......+|...+++-+|+|.. +.|++++.||++++||+...+. ++.+     .+..-
T Consensus       240 l~DRdG~~~~e~~KGDQY-I~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~q~qVik~k~~~g~Rv  318 (641)
T KOG0772|consen  240 LLDRDGFEIVEFSKGDQY-IRDMYNTKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKSQLQVIKTKPAGGKRV  318 (641)
T ss_pred             EEccCCceeeeeeccchh-hhhhhccCCceeeeeccccccCcccceEEecCCCcEEEEecCCchhheeEEeeccCCCccc
Confidence            999876655544332210 01112245677789999999965 5789999999999999975442 2222     13345


Q ss_pred             ceEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCe---eEEEeecccc--cEEEEEEcCCCCeEEEEeCCCcEEEEecCcc-
Q 021247          202 PVRSLVYSPVDPRVLFSASDDTHVHMYDAEGKS---LVTAMSGHAS--WVLSVDASPDGAAITTGSSDRTVKLWDLNMR-  275 (315)
Q Consensus       202 ~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~---~~~~~~~~~~--~i~~~~~~~~~~~l~s~~~d~~i~iwd~~~~-  275 (315)
                      +++..+|+| ++.++++|..||.|.+|+..+..   ....-..|..  .|++|.||++|++|++=+.|+++++||++.. 
T Consensus       319 ~~tsC~~nr-dg~~iAagc~DGSIQ~W~~~~~~v~p~~~vk~AH~~g~~Itsi~FS~dg~~LlSRg~D~tLKvWDLrq~k  397 (641)
T KOG0772|consen  319 PVTSCAWNR-DGKLIAAGCLDGSIQIWDKGSRTVRPVMKVKDAHLPGQDITSISFSYDGNYLLSRGFDDTLKVWDLRQFK  397 (641)
T ss_pred             CceeeecCC-CcchhhhcccCCceeeeecCCcccccceEeeeccCCCCceeEEEeccccchhhhccCCCceeeeeccccc
Confidence            788999998 66789999999999999975432   2233456766  8999999999999999999999999999864 


Q ss_pred             ceehcccccc--cceEEEEEeeCCCEEEEEeC------CCcEEEee
Q 021247          276 AAMQSMTNHT--DQVWGVSFRPLGGRVVSVSD------DKSISLYE  313 (315)
Q Consensus       276 ~~~~~~~~~~--~~v~~~~~s~~~~~l~s~~~------d~~i~i~~  313 (315)
                      +++.+..+-.  -+-+.++|||+.+.|++|..      .|++.+||
T Consensus       398 kpL~~~tgL~t~~~~tdc~FSPd~kli~TGtS~~~~~~~g~L~f~d  443 (641)
T KOG0772|consen  398 KPLNVRTGLPTPFPGTDCCFSPDDKLILTGTSAPNGMTAGTLFFFD  443 (641)
T ss_pred             cchhhhcCCCccCCCCccccCCCceEEEecccccCCCCCceEEEEe
Confidence            4565544322  24568999999999888765      45666665

>KOG2048 consensus WD40 repeat protein [General function prediction only]

Probab=99.96  E-value=1.7e-25  Score=188.82  Aligned_cols=278  Identities=19%  Similarity=0.303  Sum_probs=227.8

Q ss_pred             ccceEEEEEeecCCCCCcEEEEeeCCCcEEEEcCCCCcc-eeeccccc-cceEEEEeCCCCCEEEEeeCCCeEEEEECCC
Q 021247           14 EESVWAVTWVPATETRPALLLTGSLDETVKLWRPDDMQL-ERTNTGHC-LGVVSVAAHPSGIIAASASLDSFVRVFDVDT   91 (315)
Q Consensus        14 ~~~v~~v~~~~~~~~~~~~l~sgs~d~~v~~w~~~~~~~-~~~~~~h~-~~v~~~~~~~~g~~l~s~~~d~~i~~w~~~~   91 (315)
                      ..+|.+++++..++    .||.+=.||.|.+|++...-+ ...+.++. ..|-+++|. +|..|.|.+.+|.|--||+.+
T Consensus        25 Ps~I~slA~s~kS~----~lAvsRt~g~IEiwN~~~~w~~~~vi~g~~drsIE~L~W~-e~~RLFS~g~sg~i~EwDl~~   99 (691)
T KOG2048|consen   25 PSEIVSLAYSHKSN----QLAVSRTDGNIEIWNLSNNWFLEPVIHGPEDRSIESLAWA-EGGRLFSSGLSGSITEWDLHT   99 (691)
T ss_pred             ccceEEEEEeccCC----ceeeeccCCcEEEEccCCCceeeEEEecCCCCceeeEEEc-cCCeEEeecCCceEEEEeccc
Confidence            35889999998775    389999999999999876543 44455554 578999998 566778899999999999999


Q ss_pred             CceeEEeeCCcccEEEEEECCCCCeEEEEecCCCeEEEEecCCcceeeeecCCCCCCCCCCccCCCCcceEEEEECCCCC
Q 021247           92 NASIATLEASPSEVWQMQFDPKGTTLAVAGGGSASVKLWDTATWNLIATLSIPRPEGLKPTDKSSSKKFVLSVAWSPDGR  171 (315)
Q Consensus        92 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~  171 (315)
                      .+....++...++||+++.+|.+..+ ..|++||.+..++...++......++++           +.++.++.|+|++.
T Consensus       100 lk~~~~~d~~gg~IWsiai~p~~~~l-~IgcddGvl~~~s~~p~~I~~~r~l~rq-----------~sRvLslsw~~~~~  167 (691)
T KOG2048|consen  100 LKQKYNIDSNGGAIWSIAINPENTIL-AIGCDDGVLYDFSIGPDKITYKRSLMRQ-----------KSRVLSLSWNPTGT  167 (691)
T ss_pred             CceeEEecCCCcceeEEEeCCccceE-EeecCCceEEEEecCCceEEEEeecccc-----------cceEEEEEecCCcc
Confidence            99999999899999999999998765 4567899888888877776665555443           35699999999999


Q ss_pred             EEEEecCCCcEEEEEcccceeeeee-------cC-CccceEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCeeEEEeeccc
Q 021247          172 RIACGSMDGTISVFDVTRAKFLHHL-------EG-HFMPVRSLVYSPVDPRVLFSASDDTHVHMYDAEGKSLVTAMSGHA  243 (315)
Q Consensus       172 ~l~~~s~dg~i~i~d~~~~~~~~~~-------~~-~~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~  243 (315)
                      .++.|+.||.|++||...+..+...       .. ....|+++.|-.  +..|++|..-|+|.+||...+++++....|.
T Consensus       168 ~i~~Gs~Dg~Iriwd~~~~~t~~~~~~~~d~l~k~~~~iVWSv~~Lr--d~tI~sgDS~G~V~FWd~~~gTLiqS~~~h~  245 (691)
T KOG2048|consen  168 KIAGGSIDGVIRIWDVKSGQTLHIITMQLDRLSKREPTIVWSVLFLR--DSTIASGDSAGTVTFWDSIFGTLIQSHSCHD  245 (691)
T ss_pred             EEEecccCceEEEEEcCCCceEEEeeecccccccCCceEEEEEEEee--cCcEEEecCCceEEEEcccCcchhhhhhhhh
Confidence            9999999999999999887765521       11 234578888874  4589999999999999999999999999999


Q ss_pred             ccEEEEEEcCCCCeEEEEeCCCcEEEEecCccce----ehcccccccceEEEEEeeCCCEEEEEeCCCcEEEe
Q 021247          244 SWVLSVDASPDGAAITTGSSDRTVKLWDLNMRAA----MQSMTNHTDQVWGVSFRPLGGRVVSVSDDKSISLY  312 (315)
Q Consensus       244 ~~i~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~----~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~i~i~  312 (315)
                      +.|.+++.++++..|+++|.|++|.-+.....+.    ......|...|.+++..++  .+++||.|.++.+-
T Consensus       246 adVl~Lav~~~~d~vfsaGvd~~ii~~~~~~~~~~wv~~~~r~~h~hdvrs~av~~~--~l~sgG~d~~l~i~  316 (691)
T KOG2048|consen  246 ADVLALAVADNEDRVFSAGVDPKIIQYSLTTNKSEWVINSRRDLHAHDVRSMAVIEN--ALISGGRDFTLAIC  316 (691)
T ss_pred             cceeEEEEcCCCCeEEEccCCCceEEEEecCCccceeeeccccCCcccceeeeeecc--eEEecceeeEEEEc
Confidence            9999999999999999999999998887765432    3334578888999999887  88999999988763

>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.96  E-value=6.4e-26  Score=174.80  Aligned_cols=264  Identities=20%  Similarity=0.324  Sum_probs=194.4

Q ss_pred             hhhhhhccccceEEEEEeecCCCCCcEEEEeeCCCcEEEEcCCC----CcceeeccccccceEEEEeC-C-CCCEEEEee
Q 021247            6 LKSVENAHEESVWAVTWVPATETRPALLLTGSLDETVKLWRPDD----MQLERTNTGHCLGVVSVAAH-P-SGIIAASAS   79 (315)
Q Consensus         6 ~~~~~~~h~~~v~~v~~~~~~~~~~~~l~sgs~d~~v~~w~~~~----~~~~~~~~~h~~~v~~~~~~-~-~g~~l~s~~   79 (315)
                      ..++..+|.+-|.+|.|-+-+.    .++|||.|++|+|||...    ..+...-+.|.+.|..+.|- | -|+.+++++
T Consensus         5 ~~pi~s~h~DlihdVs~D~~GR----RmAtCSsDq~vkI~d~~~~s~~W~~Ts~Wrah~~Si~rV~WAhPEfGqvvA~cS   80 (361)
T KOG2445|consen    5 MAPIDSGHKDLIHDVSFDFYGR----RMATCSSDQTVKIWDSTSDSGTWSCTSSWRAHDGSIWRVVWAHPEFGQVVATCS   80 (361)
T ss_pred             ccccccCCcceeeeeeecccCc----eeeeccCCCcEEEEeccCCCCceEEeeeEEecCCcEEEEEecCccccceEEEEe
Confidence            3567889999999999999887    499999999999999532    33455567899999999874 3 589999999


Q ss_pred             CCCeEEEEECCCC---------ceeEEeeCCcccEEEEEECCCCC-eEEEEecCCCeEEEEecCCcceeeeecCCCCCCC
Q 021247           80 LDSFVRVFDVDTN---------ASIATLEASPSEVWQMQFDPKGT-TLAVAGGGSASVKLWDTATWNLIATLSIPRPEGL  149 (315)
Q Consensus        80 ~d~~i~~w~~~~~---------~~~~~~~~~~~~v~~~~~~~~~~-~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~  149 (315)
                      .|+++.||.=...         ....++......|..++|.|... ..+++++.||++|||+.-.--.+..+++......
T Consensus        81 ~Drtv~iWEE~~~~~~~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs~W~Lq~Ei~~  160 (361)
T KOG2445|consen   81 YDRTVSIWEEQEKSEEAHGRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNLSQWTLQHEIQN  160 (361)
T ss_pred             cCCceeeeeecccccccccceeEEEEEeecCCcceeEEEecchhcceEEEEeccCcEEEEEecCCccccccchhhhhhhh
Confidence            9999999975211         12345666778899999999753 4567888999999998643211111111110000


Q ss_pred             CCCccCCCCcceEEEEECCC---CCEEEEecCC-----CcEEEEEcccc----eeeeeecCCccceEEEEEcCCCC---c
Q 021247          150 KPTDKSSSKKFVLSVAWSPD---GRRIACGSMD-----GTISVFDVTRA----KFLHHLEGHFMPVRSLVYSPVDP---R  214 (315)
Q Consensus       150 ~~~~~~~~~~~i~~~~~~~~---~~~l~~~s~d-----g~i~i~d~~~~----~~~~~~~~~~~~v~~~~~~~~~~---~  214 (315)
                      -+.....++....|+.|+|.   ..+|++|+.+     +.++||....+    ..+..+.+|..+|++++|.|.-+   +
T Consensus       161 ~~~pp~~~~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva~L~d~~dpI~di~wAPn~Gr~y~  240 (361)
T KOG2445|consen  161 VIDPPGKNKQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRKWLKVAELPDHTDPIRDISWAPNIGRSYH  240 (361)
T ss_pred             ccCCcccccCcceEEeeccccccCceEEEEcccCCccccceEEEEecCCcceeeeehhcCCCCCcceeeeeccccCCcee
Confidence            00011223445678999974   4578888776     46888865322    23556779999999999999644   4


Q ss_pred             EEEEEeCCCeEEEEeCCCC--------------------eeEEEeecccccEEEEEEcCCCCeEEEEeCCCcEEEEecCc
Q 021247          215 VLFSASDDTHVHMYDAEGK--------------------SLVTAMSGHASWVLSVDASPDGAAITTGSSDRTVKLWDLNM  274 (315)
Q Consensus       215 ~l~s~~~d~~i~~wd~~~~--------------------~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~d~~i~iwd~~~  274 (315)
                      +|++++.|| |+||.++..                    +.+..+.+|.+.++.+.|+-.|.+|++.|.||.||+|..+.
T Consensus       241 ~lAvA~kDg-v~I~~v~~~~s~i~~ee~~~~~~~~~l~v~~vs~~~~H~~~VWrv~wNmtGtiLsStGdDG~VRLWkany  319 (361)
T KOG2445|consen  241 LLAVATKDG-VRIFKVKVARSAIEEEEVLAPDLMTDLPVEKVSELDDHNGEVWRVRWNMTGTILSSTGDDGCVRLWKANY  319 (361)
T ss_pred             eEEEeecCc-EEEEEEeeccchhhhhcccCCCCccccceEEeeeccCCCCceEEEEEeeeeeEEeecCCCceeeehhhhh
Confidence            789999999 999997631                    23456778999999999999999999999999999997654

>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]

Probab=99.96  E-value=3.5e-27  Score=180.86  Aligned_cols=206  Identities=22%  Similarity=0.310  Sum_probs=169.4

Q ss_pred             cccccceEEEEeCC-CCCEEEEeeCCCeEEEEECCCCc------------eeE---EeeCCcccEEEEEECCCCCeEEEE
Q 021247           57 TGHCLGVVSVAAHP-SGIIAASASLDSFVRVFDVDTNA------------SIA---TLEASPSEVWQMQFDPKGTTLAVA  120 (315)
Q Consensus        57 ~~h~~~v~~~~~~~-~g~~l~s~~~d~~i~~w~~~~~~------------~~~---~~~~~~~~v~~~~~~~~~~~~~~~  120 (315)
                      ..|.++|+++++.+ .|+++++|+.||.|-+||++...            ++.   .-..|.-.|..+.|-|-.+-++.+
T Consensus        40 r~HgGsvNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky~iss~~WyP~DtGmFts  119 (397)
T KOG4283|consen   40 RPHGGSVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHKYAISSAIWYPIDTGMFTS  119 (397)
T ss_pred             ccCCCccceeeeccccceEEeecCCCccEEEEEeccccchhhccceeheeeeccccCCccceeeeeeeEEeeecCceeec
Confidence            45889999999987 57899999999999999998643            110   112355678999999988888899


Q ss_pred             ecCCCeEEEEecCCcceeeeecCCCCCCCCCCccCCCCcceEEEEECCC---CCEEEEecCCCcEEEEEcccceeeeeec
Q 021247          121 GGGSASVKLWDTATWNLIATLSIPRPEGLKPTDKSSSKKFVLSVAWSPD---GRRIACGSMDGTISVFDVTRAKFLHHLE  197 (315)
Q Consensus       121 ~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~---~~~l~~~s~dg~i~i~d~~~~~~~~~~~  197 (315)
                      ++-|.++++||..+.+....++.+..              |.+-+++|-   .-++|+|+.+-.|++.|+..+.....+.
T Consensus       120 sSFDhtlKVWDtnTlQ~a~~F~me~~--------------VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SGs~sH~Ls  185 (397)
T KOG4283|consen  120 SSFDHTLKVWDTNTLQEAVDFKMEGK--------------VYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASGSFSHTLS  185 (397)
T ss_pred             ccccceEEEeecccceeeEEeecCce--------------eehhhcChhhhcceEEEEecCCCcEEEEeccCCcceeeec
Confidence            99999999999999887777655432              556666662   2356788889999999999999999999


Q ss_pred             CCccceEEEEEcCCCCcEEEEEeCCCeEEEEeCCCC-ee--------------EEEeecccccEEEEEEcCCCCeEEEEe
Q 021247          198 GHFMPVRSLVYSPVDPRVLFSASDDTHVHMYDAEGK-SL--------------VTAMSGHASWVLSVDASPDGAAITTGS  262 (315)
Q Consensus       198 ~~~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~-~~--------------~~~~~~~~~~i~~~~~~~~~~~l~s~~  262 (315)
                      +|...|.++.|+|...-.|++|+.||.|++||++.. -+              ++.-..|.+.++.++|..++.++++.+
T Consensus       186 GHr~~vlaV~Wsp~~e~vLatgsaDg~irlWDiRrasgcf~~lD~hn~k~~p~~~~n~ah~gkvngla~tSd~~~l~~~g  265 (397)
T KOG4283|consen  186 GHRDGVLAVEWSPSSEWVLATGSADGAIRLWDIRRASGCFRVLDQHNTKRPPILKTNTAHYGKVNGLAWTSDARYLASCG  265 (397)
T ss_pred             cccCceEEEEeccCceeEEEecCCCceEEEEEeecccceeEEeecccCccCccccccccccceeeeeeecccchhhhhcc
Confidence            999999999999988889999999999999998743 11              112235889999999999999999999


Q ss_pred             CCCcEEEEecCccc
Q 021247          263 SDRTVKLWDLNMRA  276 (315)
Q Consensus       263 ~d~~i~iwd~~~~~  276 (315)
                      .|.++++|+...|+
T Consensus       266 td~r~r~wn~~~G~  279 (397)
T KOG4283|consen  266 TDDRIRVWNMESGR  279 (397)
T ss_pred             CccceEEeecccCc
Confidence            99999999987654

>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]

Probab=99.96  E-value=1.1e-28  Score=209.21  Aligned_cols=236  Identities=25%  Similarity=0.375  Sum_probs=208.1

Q ss_pred             hccccceEEEEEeecCCCCCcEEEEeeCCCcEEEEcCCCCcceeeccccccceEEEEeCCCCCEEEEeeCCCeEEEEECC
Q 021247           11 NAHEESVWAVTWVPATETRPALLLTGSLDETVKLWRPDDMQLERTNTGHCLGVVSVAAHPSGIIAASASLDSFVRVFDVD   90 (315)
Q Consensus        11 ~~h~~~v~~v~~~~~~~~~~~~l~sgs~d~~v~~w~~~~~~~~~~~~~h~~~v~~~~~~~~g~~l~s~~~d~~i~~w~~~   90 (315)
                      .+|...|.++.--...    -.+++|+.|..+-+|..........+.+|..+|.++.|+++..+|++|+.+|+|++||++
T Consensus        25 ~~hsaav~~lk~~~s~----r~~~~Gg~~~k~~L~~i~kp~~i~S~~~hespIeSl~f~~~E~LlaagsasgtiK~wDle  100 (825)
T KOG0267|consen   25 VAHSAAVGCLKIRKSS----RSLVTGGEDEKVNLWAIGKPNAITSLTGHESPIESLTFDTSERLLAAGSASGTIKVWDLE  100 (825)
T ss_pred             hhhhhhhceeeeeccc----eeeccCCCceeeccccccCCchhheeeccCCcceeeecCcchhhhcccccCCceeeeehh
Confidence            3688888888763222    369999999999999887766666789999999999999999999999999999999999


Q ss_pred             CCceeEEeeCCcccEEEEEECCCCCeEEEEecCCCeEEEEecCCcceeeeecCCCCCCCCCCccCCCCcceEEEEECCCC
Q 021247           91 TNASIATLEASPSEVWQMQFDPKGTTLAVAGGGSASVKLWDTATWNLIATLSIPRPEGLKPTDKSSSKKFVLSVAWSPDG  170 (315)
Q Consensus        91 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~  170 (315)
                      ....+.++.+|...+..+.|+|.+.++ ++|+.|..+++||++...+...+..             |...+..+.|+|+|
T Consensus       101 eAk~vrtLtgh~~~~~sv~f~P~~~~~-a~gStdtd~~iwD~Rk~Gc~~~~~s-------------~~~vv~~l~lsP~G  166 (825)
T KOG0267|consen  101 EAKIVRTLTGHLLNITSVDFHPYGEFF-ASGSTDTDLKIWDIRKKGCSHTYKS-------------HTRVVDVLRLSPDG  166 (825)
T ss_pred             hhhhhhhhhccccCcceeeeccceEEe-ccccccccceehhhhccCceeeecC-------------CcceeEEEeecCCC
Confidence            999999999999999999999998866 7889999999999997666665532             44458899999999


Q ss_pred             CEEEEecCCCcEEEEEcccceeeeeecCCccceEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCeeEEEeecccccEEEEE
Q 021247          171 RRIACGSMDGTISVFDVTRAKFLHHLEGHFMPVRSLVYSPVDPRVLFSASDDTHVHMYDAEGKSLVTAMSGHASWVLSVD  250 (315)
Q Consensus       171 ~~l~~~s~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~i~~~~  250 (315)
                      +++++|+.|..+++||+..++....+..|+..+..+.|+| ..-++.+|+.|+++++||+++.+.+.........|.++.
T Consensus       167 r~v~~g~ed~tvki~d~~agk~~~ef~~~e~~v~sle~hp-~e~Lla~Gs~d~tv~f~dletfe~I~s~~~~~~~v~~~~  245 (825)
T KOG0267|consen  167 RWVASGGEDNTVKIWDLTAGKLSKEFKSHEGKVQSLEFHP-LEVLLAPGSSDRTVRFWDLETFEVISSGKPETDGVRSLA  245 (825)
T ss_pred             ceeeccCCcceeeeecccccccccccccccccccccccCc-hhhhhccCCCCceeeeeccceeEEeeccCCccCCceeee
Confidence            9999999999999999999999999999999999999998 556889999999999999999888888877788999999


Q ss_pred             EcCCCCeEEEEeCCC
Q 021247          251 ASPDGAAITTGSSDR  265 (315)
Q Consensus       251 ~~~~~~~l~s~~~d~  265 (315)
                      |+|++..+++|....
T Consensus       246 fn~~~~~~~~G~q~s  260 (825)
T KOG0267|consen  246 FNPDGKIVLSGEQIS  260 (825)
T ss_pred             ecCCceeeecCchhh
Confidence            999999888877654

>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]

Probab=99.95  E-value=8.2e-27  Score=190.65  Aligned_cols=281  Identities=19%  Similarity=0.256  Sum_probs=226.0

Q ss_pred             hccccceEEEEEeecCCCCCcEEEEeeCCCcEEEEcCCCCc---ceeeccc--cccceEEEEeCCCCCEEEEeeCCCeEE
Q 021247           11 NAHEESVWAVTWVPATETRPALLLTGSLDETVKLWRPDDMQ---LERTNTG--HCLGVVSVAAHPSGIIAASASLDSFVR   85 (315)
Q Consensus        11 ~~h~~~v~~v~~~~~~~~~~~~l~sgs~d~~v~~w~~~~~~---~~~~~~~--h~~~v~~~~~~~~g~~l~s~~~d~~i~   85 (315)
                      .+|.+-|.+++-+....    .++||+. |.|++||.....   ....++.  -...+.++...|+|..|++|+.-.++-
T Consensus       416 L~HGEvVcAvtIS~~tr----hVyTgGk-gcVKVWdis~pg~k~PvsqLdcl~rdnyiRSckL~pdgrtLivGGeastls  490 (705)
T KOG0639|consen  416 LAHGEVVCAVTISNPTR----HVYTGGK-GCVKVWDISQPGNKSPVSQLDCLNRDNYIRSCKLLPDGRTLIVGGEASTLS  490 (705)
T ss_pred             hccCcEEEEEEecCCcc----eeEecCC-CeEEEeeccCCCCCCccccccccCcccceeeeEecCCCceEEeccccceee
Confidence            48988999999887665    4888875 789999975432   1222222  345789999999999999999999999


Q ss_pred             EEECCCCceeE--EeeCCcccEEEEEECCCCCeEEEEecCCCeEEEEecCCcceeeeecCCCCCCCCCCccCCCCcceEE
Q 021247           86 VFDVDTNASIA--TLEASPSEVWQMQFDPKGTTLAVAGGGSASVKLWDTATWNLIATLSIPRPEGLKPTDKSSSKKFVLS  163 (315)
Q Consensus        86 ~w~~~~~~~~~--~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~  163 (315)
                      |||+.......  .+......+..++.+|+.+ +++++..||.|.|||+.+...+..+.             +|.+...|
T Consensus       491 iWDLAapTprikaeltssapaCyALa~spDak-vcFsccsdGnI~vwDLhnq~~Vrqfq-------------GhtDGasc  556 (705)
T KOG0639|consen  491 IWDLAAPTPRIKAELTSSAPACYALAISPDAK-VCFSCCSDGNIAVWDLHNQTLVRQFQ-------------GHTDGASC  556 (705)
T ss_pred             eeeccCCCcchhhhcCCcchhhhhhhcCCccc-eeeeeccCCcEEEEEcccceeeeccc-------------CCCCCcee
Confidence            99998765432  2333335678899999977 56778899999999999876665553             45566899


Q ss_pred             EEECCCCCEEEEecCCCcEEEEEcccceeeeeecCCccceEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCeeEEEeeccc
Q 021247          164 VAWSPDGRRIACGSMDGTISVFDVTRAKFLHHLEGHFMPVRSLVYSPVDPRVLFSASDDTHVHMYDAEGKSLVTAMSGHA  243 (315)
Q Consensus       164 ~~~~~~~~~l~~~s~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~  243 (315)
                      |.++++|..|.+|+.|++|+.||+++++.+.... ....|.++..+| .+.+++.|-.++.+.+-.... ...+++..|.
T Consensus       557 Idis~dGtklWTGGlDntvRcWDlregrqlqqhd-F~SQIfSLg~cP-~~dWlavGMens~vevlh~sk-p~kyqlhlhe  633 (705)
T KOG0639|consen  557 IDISKDGTKLWTGGLDNTVRCWDLREGRQLQQHD-FSSQIFSLGYCP-TGDWLAVGMENSNVEVLHTSK-PEKYQLHLHE  633 (705)
T ss_pred             EEecCCCceeecCCCccceeehhhhhhhhhhhhh-hhhhheecccCC-CccceeeecccCcEEEEecCC-ccceeecccc
Confidence            9999999999999999999999999887654321 245788888898 567999999999888876543 3456677789


Q ss_pred             ccEEEEEEcCCCCeEEEEeCCCcEEEEecCccceehcccccccceEEEEEeeCCCEEEEEeCCCcEEEeec
Q 021247          244 SWVLSVDASPDGAAITTGSSDRTVKLWDLNMRAAMQSMTNHTDQVWGVSFRPLGGRVVSVSDDKSISLYEY  314 (315)
Q Consensus       244 ~~i~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~i~i~~~  314 (315)
                      ..|.++.|.+-|+++++.+.|+-+..|....+..+.+.. ....|.++.+|.|.++|++|+.|+.-.||.+
T Consensus       634 ScVLSlKFa~cGkwfvStGkDnlLnawrtPyGasiFqsk-E~SsVlsCDIS~ddkyIVTGSGdkkATVYeV  703 (705)
T KOG0639|consen  634 SCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQSK-ESSSVLSCDISFDDKYIVTGSGDKKATVYEV  703 (705)
T ss_pred             cEEEEEEecccCceeeecCchhhhhhccCccccceeecc-ccCcceeeeeccCceEEEecCCCcceEEEEE
Confidence            999999999999999999999999999999888776543 4568999999999999999999999998875

>KOG1539 consensus WD repeat protein [General function prediction only]

Probab=99.95  E-value=3.9e-26  Score=196.67  Aligned_cols=287  Identities=22%  Similarity=0.334  Sum_probs=229.6

Q ss_pred             hhhccccceEEEEEeecCCCCCcEEEEeeCCCcEEEEcCCCC----cceeeccccccceEEEEeC-CCCCEEEEeeCCCe
Q 021247            9 VENAHEESVWAVTWVPATETRPALLLTGSLDETVKLWRPDDM----QLERTNTGHCLGVVSVAAH-PSGIIAASASLDSF   83 (315)
Q Consensus         9 ~~~~h~~~v~~v~~~~~~~~~~~~l~sgs~d~~v~~w~~~~~----~~~~~~~~h~~~v~~~~~~-~~g~~l~s~~~d~~   83 (315)
                      +.++|...|....|.|..+    +++|++.|+.+++|-.+++    ..++...||..|..++.|. .+|..+.+++.|++
T Consensus       283 ~~nah~~sv~~~~fl~~ep----Vl~ta~~DnSlk~~vfD~~dg~pR~LR~R~GHs~Pp~~irfy~~~g~~ilsa~~Drt  358 (910)
T KOG1539|consen  283 TRNAHYGSVTGATFLPGEP----VLVTAGADNSLKVWVFDSGDGVPRLLRSRGGHSAPPSCIRFYGSQGHFILSAKQDRT  358 (910)
T ss_pred             eeccccCCcccceecCCCc----eEeeccCCCceeEEEeeCCCCcchheeeccCCCCCchheeeeccCcEEEEecccCcc
Confidence            3469999999999998654    7999999999999966532    4566778999999999997 67899999999998


Q ss_pred             EEEEECCCCc----------------------------eeEEe-------------------------------------
Q 021247           84 VRVFDVDTNA----------------------------SIATL-------------------------------------   98 (315)
Q Consensus        84 i~~w~~~~~~----------------------------~~~~~-------------------------------------   98 (315)
                      .+.+++....                            .+..+                                     
T Consensus       359 ~r~fs~~~e~~~~~l~~~~~~~~~kk~~~~~~~~~k~p~i~~fa~~~~RE~~W~Nv~~~h~~~~~~~tW~~~n~~~G~~~  438 (910)
T KOG1539|consen  359 LRSFSVISESQSQELGQLHNKKRAKKVNVFSTEKLKLPPIVEFAFENAREKEWDNVITAHKGKRSAYTWNFRNKTSGRHV  438 (910)
T ss_pred             hhhhhhhHHHHhHhhcccccccccccccccchhhhcCCcceeeecccchhhhhcceeEEecCcceEEEEeccCcccccEE
Confidence            8877652110                            00000                                     


Q ss_pred             -eC-----CcccEEEEEECCCCCeEEEEecCCCeEEEEecCCcceeeeecCCCCCCCCCCccCCCCcceEEEEECCCCCE
Q 021247           99 -EA-----SPSEVWQMQFDPKGTTLAVAGGGSASVKLWDTATWNLIATLSIPRPEGLKPTDKSSSKKFVLSVAWSPDGRR  172 (315)
Q Consensus        99 -~~-----~~~~v~~~~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~  172 (315)
                       +.     ....+.+++.++-|+ +++.|...|.|-+|++.++-...++.          ....|+..|++++...-++.
T Consensus       439 L~~~~~~~~~~~~~av~vs~CGN-F~~IG~S~G~Id~fNmQSGi~r~sf~----------~~~ah~~~V~gla~D~~n~~  507 (910)
T KOG1539|consen  439 LDPKRFKKDDINATAVCVSFCGN-FVFIGYSKGTIDRFNMQSGIHRKSFG----------DSPAHKGEVTGLAVDGTNRL  507 (910)
T ss_pred             ecCccccccCcceEEEEEeccCc-eEEEeccCCeEEEEEcccCeeecccc----------cCccccCceeEEEecCCCce
Confidence             00     113466777777777 45668889999999998765554442          12356777999999998999


Q ss_pred             EEEecCCCcEEEEEcccceeeeeecCCccceEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCeeEEEeecccccEEEEEEc
Q 021247          173 IACGSMDGTISVFDVTRAKFLHHLEGHFMPVRSLVYSPVDPRVLFSASDDTHVHMYDAEGKSLVTAMSGHASWVLSVDAS  252 (315)
Q Consensus       173 l~~~s~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~i~~~~~~  252 (315)
                      +++++.+|-+++||..+...+..+.-. .++..+..+. ...+++.+.+|-.|.++|..+.+.++.+.+|.+.|++++||
T Consensus       508 ~vsa~~~Gilkfw~f~~k~l~~~l~l~-~~~~~iv~hr-~s~l~a~~~ddf~I~vvD~~t~kvvR~f~gh~nritd~~FS  585 (910)
T KOG1539|consen  508 LVSAGADGILKFWDFKKKVLKKSLRLG-SSITGIVYHR-VSDLLAIALDDFSIRVVDVVTRKVVREFWGHGNRITDMTFS  585 (910)
T ss_pred             EEEccCcceEEEEecCCcceeeeeccC-CCcceeeeee-hhhhhhhhcCceeEEEEEchhhhhhHHhhccccceeeeEeC
Confidence            999999999999999887777666532 3556666665 45688888999999999999999999999999999999999


Q ss_pred             CCCCeEEEEeCCCcEEEEecCccceehcccccccceEEEEEeeCCCEEEEEeCC-CcEEEee
Q 021247          253 PDGAAITTGSSDRTVKLWDLNMRAAMQSMTNHTDQVWGVSFRPLGGRVVSVSDD-KSISLYE  313 (315)
Q Consensus       253 ~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d-~~i~i~~  313 (315)
                      |+|++|++++.|++||+||+.++..+..+.- ..+++++.|||+|.+||++-.| .-|.+|.
T Consensus       586 ~DgrWlisasmD~tIr~wDlpt~~lID~~~v-d~~~~sls~SPngD~LAT~Hvd~~gIylWs  646 (910)
T KOG1539|consen  586 PDGRWLISASMDSTIRTWDLPTGTLIDGLLV-DSPCTSLSFSPNGDFLATVHVDQNGIYLWS  646 (910)
T ss_pred             CCCcEEEEeecCCcEEEEeccCcceeeeEec-CCcceeeEECCCCCEEEEEEecCceEEEEE
Confidence            9999999999999999999999988876643 4688899999999999999998 7899984

>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]

Probab=99.95  E-value=1.1e-26  Score=196.36  Aligned_cols=243  Identities=23%  Similarity=0.374  Sum_probs=201.2

Q ss_pred             CCcceeeccccccceEEEEeCCCCCEEEEeeCCCeEEEEECCCCceeE--EeeCCcccEEE-EEECCCCCeEEEEecCCC
Q 021247           49 DMQLERTNTGHCLGVVSVAAHPSGIIAASASLDSFVRVFDVDTNASIA--TLEASPSEVWQ-MQFDPKGTTLAVAGGGSA  125 (315)
Q Consensus        49 ~~~~~~~~~~h~~~v~~~~~~~~g~~l~s~~~d~~i~~w~~~~~~~~~--~~~~~~~~v~~-~~~~~~~~~~~~~~~~d~  125 (315)
                      ..++...+.||...|..+.+.+.. .++++|.||++++|+...++-..  .+..+.+-+.. ++|-+..+-.++.|+.|.
T Consensus         3 ~Y~ls~~l~gH~~DVr~v~~~~~~-~i~s~sRd~t~~vw~~~~~~~l~~~~~~~~~g~i~~~i~y~e~~~~~l~~g~~D~   81 (745)
T KOG0301|consen    3 QYKLSHELEGHKSDVRAVAVTDGV-CIISGSRDGTVKVWAKKGKQYLETHAFEGPKGFIANSICYAESDKGRLVVGGMDT   81 (745)
T ss_pred             cceeEEEeccCccchheeEecCCe-EEeecCCCCceeeeeccCcccccceecccCcceeeccceeccccCcceEeecccc
Confidence            356677888999999888876544 78899999999999987766543  45556665555 777665554567899999


Q ss_pred             eEEEEecCCcceeeeecCCCCCCCCCCccCCCCcceEEEEECCCCCEEEEecCCCcEEEEEcccceeeeeecCCccceEE
Q 021247          126 SVKLWDTATWNLIATLSIPRPEGLKPTDKSSSKKFVLSVAWSPDGRRIACGSMDGTISVFDVTRAKFLHHLEGHFMPVRS  205 (315)
Q Consensus       126 ~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~s~dg~i~i~d~~~~~~~~~~~~~~~~v~~  205 (315)
                      ++.+|...+.+++..+             .+|+..|.++....++. +++||.|.++++|-.  ++....+.+|+.+|++
T Consensus        82 ~i~v~~~~~~~P~~~L-------------kgH~snVC~ls~~~~~~-~iSgSWD~TakvW~~--~~l~~~l~gH~asVWA  145 (745)
T KOG0301|consen   82 TIIVFKLSQAEPLYTL-------------KGHKSNVCSLSIGEDGT-LISGSWDSTAKVWRI--GELVYSLQGHTASVWA  145 (745)
T ss_pred             eEEEEecCCCCchhhh-------------hccccceeeeecCCcCc-eEecccccceEEecc--hhhhcccCCcchheee
Confidence            9999998776655444             35666688888777776 999999999999975  4555668999999999


Q ss_pred             EEEcCCCCcEEEEEeCCCeEEEEeCCCCeeEEEeecccccEEEEEEcCCCCeEEEEeCCCcEEEEecCccceehcccccc
Q 021247          206 LVYSPVDPRVLFSASDDTHVHMYDAEGKSLVTAMSGHASWVLSVDASPDGAAITTGSSDRTVKLWDLNMRAAMQSMTNHT  285 (315)
Q Consensus       206 ~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~  285 (315)
                      +++.|.+  .+++|+.|.+|++|..  ++.++.+.+|.+.|..+++-|++. +++++.||.|+.|++ .++.+.++.+|+
T Consensus       146 v~~l~e~--~~vTgsaDKtIklWk~--~~~l~tf~gHtD~VRgL~vl~~~~-flScsNDg~Ir~w~~-~ge~l~~~~ght  219 (745)
T KOG0301|consen  146 VASLPEN--TYVTGSADKTIKLWKG--GTLLKTFSGHTDCVRGLAVLDDSH-FLSCSNDGSIRLWDL-DGEVLLEMHGHT  219 (745)
T ss_pred             eeecCCC--cEEeccCcceeeeccC--CchhhhhccchhheeeeEEecCCC-eEeecCCceEEEEec-cCceeeeeeccc
Confidence            9999844  8999999999999965  678888999999999999988754 789999999999999 578888999999


Q ss_pred             cceEEEEEeeCCCEEEEEeCCCcEEEeec
Q 021247          286 DQVWGVSFRPLGGRVVSVSDDKSISLYEY  314 (315)
Q Consensus       286 ~~v~~~~~s~~~~~l~s~~~d~~i~i~~~  314 (315)
                      .-+.+++..+++..++++|+|++++||+-
T Consensus       220 n~vYsis~~~~~~~Ivs~gEDrtlriW~~  248 (745)
T KOG0301|consen  220 NFVYSISMALSDGLIVSTGEDRTLRIWKK  248 (745)
T ss_pred             eEEEEEEecCCCCeEEEecCCceEEEeec
Confidence            99999998888889999999999999984

>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein

Probab=99.95  E-value=6.8e-25  Score=182.32  Aligned_cols=260  Identities=18%  Similarity=0.253  Sum_probs=190.2

Q ss_pred             cceEEEEEeecCCCCCcEEEEeeCCCcEEEEcCCCCcceeeccccccceEEEEeCCCCCEEE-EeeCCCeEEEEECCCCc
Q 021247           15 ESVWAVTWVPATETRPALLLTGSLDETVKLWRPDDMQLERTNTGHCLGVVSVAAHPSGIIAA-SASLDSFVRVFDVDTNA   93 (315)
Q Consensus        15 ~~v~~v~~~~~~~~~~~~l~sgs~d~~v~~w~~~~~~~~~~~~~h~~~v~~~~~~~~g~~l~-s~~~d~~i~~w~~~~~~   93 (315)
                      ..+.+++|+|.+..   ++++++.++.|++|+..+.+....+..+.. +..+.++|+++.++ +++.|+.+++||+.+.+
T Consensus        31 ~~~~~l~~~~dg~~---l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~-~~~~~~~~~g~~l~~~~~~~~~l~~~d~~~~~  106 (300)
T TIGR03866        31 QRPRGITLSKDGKL---LYVCASDSDTIQVIDLATGEVIGTLPSGPD-PELFALHPNGKILYIANEDDNLVTVIDIETRK  106 (300)
T ss_pred             CCCCceEECCCCCE---EEEEECCCCeEEEEECCCCcEEEeccCCCC-ccEEEECCCCCEEEEEcCCCCeEEEEECCCCe
Confidence            34678999987642   456778899999999988777665554433 56788999998665 45668999999999887


Q ss_pred             eeEEeeCCcccEEEEEECCCCCeEEEEecCCCeEEEEecCCcceeeeecCCCCCCCCCCccCCCCcceEEEEECCCCCEE
Q 021247           94 SIATLEASPSEVWQMQFDPKGTTLAVAGGGSASVKLWDTATWNLIATLSIPRPEGLKPTDKSSSKKFVLSVAWSPDGRRI  173 (315)
Q Consensus        94 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l  173 (315)
                      .+..+... ..+..++|+|++..++++......+.+||.++.+........              ..+..++|+|++++|
T Consensus       107 ~~~~~~~~-~~~~~~~~~~dg~~l~~~~~~~~~~~~~d~~~~~~~~~~~~~--------------~~~~~~~~s~dg~~l  171 (300)
T TIGR03866       107 VLAEIPVG-VEPEGMAVSPDGKIVVNTSETTNMAHFIDTKTYEIVDNVLVD--------------QRPRFAEFTADGKEL  171 (300)
T ss_pred             EEeEeeCC-CCcceEEECCCCCEEEEEecCCCeEEEEeCCCCeEEEEEEcC--------------CCccEEEECCCCCEE
Confidence            77666532 346789999999877655444456788898876655433211              124578999999988


Q ss_pred             EE-ecCCCcEEEEEcccceeeeeecCCc-------cceEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCeeEEEeeccccc
Q 021247          174 AC-GSMDGTISVFDVTRAKFLHHLEGHF-------MPVRSLVYSPVDPRVLFSASDDTHVHMYDAEGKSLVTAMSGHASW  245 (315)
Q Consensus       174 ~~-~s~dg~i~i~d~~~~~~~~~~~~~~-------~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~  245 (315)
                      ++ +..++.|++||+.+++.+..+..+.       .....+.|+|++...+++.+.++.+.+||.++++.+.... +...
T Consensus       172 ~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~~~~~~~~~~~i~v~d~~~~~~~~~~~-~~~~  250 (300)
T TIGR03866       172 WVSSEIGGTVSVIDVATRKVIKKITFEIPGVHPEAVQPVGIKLTKDGKTAFVALGPANRVAVVDAKTYEVLDYLL-VGQR  250 (300)
T ss_pred             EEEcCCCCEEEEEEcCcceeeeeeeecccccccccCCccceEECCCCCEEEEEcCCCCeEEEEECCCCcEEEEEE-eCCC
Confidence            54 4568999999999887765543221       1234678998555445555667789999998877765543 3456


Q ss_pred             EEEEEEcCCCCeEEEE-eCCCcEEEEecCccceehcccccccceEEEEEee
Q 021247          246 VLSVDASPDGAAITTG-SSDRTVKLWDLNMRAAMQSMTNHTDQVWGVSFRP  295 (315)
Q Consensus       246 i~~~~~~~~~~~l~s~-~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~  295 (315)
                      +.+++|+|+++.|+++ +.++.|++||++.++.+.++... ...++++++|
T Consensus       251 ~~~~~~~~~g~~l~~~~~~~~~i~v~d~~~~~~~~~~~~~-~~~~~~~~~~  300 (300)
T TIGR03866       251 VWQLAFTPDEKYLLTTNGVSNDVSVIDVAALKVIKSIKVG-RLPWGVVVRP  300 (300)
T ss_pred             cceEEECCCCCEEEEEcCCCCeEEEEECCCCcEEEEEEcc-cccceeEeCC
Confidence            8899999999998876 56899999999999988888654 5668998876

Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.

>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.95  E-value=2.3e-26  Score=185.90  Aligned_cols=245  Identities=21%  Similarity=0.288  Sum_probs=202.4

Q ss_pred             eeccccccceEEEEeCCCCCEEEEeeCCCeEEEEECCCCceeE----E---e-----------eCCcccEEEEEECCCCC
Q 021247           54 RTNTGHCLGVVSVAAHPSGIIAASASLDSFVRVFDVDTNASIA----T---L-----------EASPSEVWQMQFDPKGT  115 (315)
Q Consensus        54 ~~~~~h~~~v~~~~~~~~g~~l~s~~~d~~i~~w~~~~~~~~~----~---~-----------~~~~~~v~~~~~~~~~~  115 (315)
                      .....|..++.++.++|+..+.++++.|++|.-|++.++....    .   +           +.|...+.+++.+++++
T Consensus       136 ~~~~~H~~s~~~vals~d~~~~fsask~g~i~kw~v~tgk~~~~i~~~~ev~k~~~~~~k~~r~~h~keil~~avS~Dgk  215 (479)
T KOG0299|consen  136 RVIGKHQLSVTSVALSPDDKRVFSASKDGTILKWDVLTGKKDRYIIERDEVLKSHGNPLKESRKGHVKEILTLAVSSDGK  215 (479)
T ss_pred             eeeccccCcceEEEeeccccceeecCCCcceeeeehhcCcccccccccchhhhhccCCCCcccccccceeEEEEEcCCCc
Confidence            4456799999999999999999999999999999998876331    1   0           25667899999999999


Q ss_pred             eEEEEecCCCeEEEEecCCcceeeeecCCCCCCCCCCccCCCCcceEEEEECCCCCEEEEecCCCcEEEEEcccceeeee
Q 021247          116 TLAVAGGGSASVKLWDTATWNLIATLSIPRPEGLKPTDKSSSKKFVLSVAWSPDGRRIACGSMDGTISVFDVTRAKFLHH  195 (315)
Q Consensus       116 ~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~s~dg~i~i~d~~~~~~~~~  195 (315)
                      ++ ++|+.|..|.|||.++.+.+..+             ..|...|.+++|-..-..+++++.|+.+++|++.....+.+
T Consensus       216 yl-atgg~d~~v~Iw~~~t~ehv~~~-------------~ghr~~V~~L~fr~gt~~lys~s~Drsvkvw~~~~~s~vet  281 (479)
T KOG0299|consen  216 YL-ATGGRDRHVQIWDCDTLEHVKVF-------------KGHRGAVSSLAFRKGTSELYSASADRSVKVWSIDQLSYVET  281 (479)
T ss_pred             EE-EecCCCceEEEecCcccchhhcc-------------cccccceeeeeeecCccceeeeecCCceEEEehhHhHHHHH
Confidence            76 67889999999999987776554             34666799999998888999999999999999999999999


Q ss_pred             ecCCccceEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCeeEEEeecccccEEEEEEcCCCCeEEEEeCCCcEEEEecCcc
Q 021247          196 LEGHFMPVRSLVYSPVDPRVLFSASDDTHVHMYDAEGKSLVTAMSGHASWVLSVDASPDGAAITTGSSDRTVKLWDLNMR  275 (315)
Q Consensus       196 ~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~d~~i~iwd~~~~  275 (315)
                      +.+|...|.++.-.. ..+.+-.|+.|+++++|++.... ...+.+|.+.+-+++|-.+ ..+++|+.||.|.+|++..+
T Consensus       282 lyGHqd~v~~IdaL~-reR~vtVGgrDrT~rlwKi~ees-qlifrg~~~sidcv~~In~-~HfvsGSdnG~IaLWs~~KK  358 (479)
T KOG0299|consen  282 LYGHQDGVLGIDALS-RERCVTVGGRDRTVRLWKIPEES-QLIFRGGEGSIDCVAFIND-EHFVSGSDNGSIALWSLLKK  358 (479)
T ss_pred             HhCCccceeeechhc-ccceEEeccccceeEEEeccccc-eeeeeCCCCCeeeEEEecc-cceeeccCCceEEEeeeccc
Confidence            999999999988764 44555566699999999995433 3345678888999998755 46899999999999999888


Q ss_pred             ceehccc-cc-----------ccceEEEEEeeCCCEEEEEeCCCcEEEeecC
Q 021247          276 AAMQSMT-NH-----------TDQVWGVSFRPLGGRVVSVSDDKSISLYEYS  315 (315)
Q Consensus       276 ~~~~~~~-~~-----------~~~v~~~~~s~~~~~l~s~~~d~~i~i~~~~  315 (315)
                      +++.+.. .|           .-+|++++..|...++++|+.+|.||||..+
T Consensus       359 kplf~~~~AHgv~~~~~~~~~~~Witsla~i~~sdL~asGS~~G~vrLW~i~  410 (479)
T KOG0299|consen  359 KPLFTSRLAHGVIPELDPVNGNFWITSLAVIPGSDLLASGSWSGCVRLWKIE  410 (479)
T ss_pred             CceeEeeccccccCCccccccccceeeeEecccCceEEecCCCCceEEEEec
Confidence            7765432 12           1278999999999999999999999999863

>KOG0270 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.95  E-value=1.3e-26  Score=186.53  Aligned_cols=248  Identities=21%  Similarity=0.339  Sum_probs=192.2

Q ss_pred             eEEEEEeec---CCCCCcEEEEeeCCCcEEEEcCCCCcc-------e--------e------eccccccceEEEEeCCC-
Q 021247           17 VWAVTWVPA---TETRPALLLTGSLDETVKLWRPDDMQL-------E--------R------TNTGHCLGVVSVAAHPS-   71 (315)
Q Consensus        17 v~~v~~~~~---~~~~~~~l~sgs~d~~v~~w~~~~~~~-------~--------~------~~~~h~~~v~~~~~~~~-   71 (315)
                      -.|++|...   .....+++|.|..|..|.|||++-...       .        +      ...+|+.+|.+++++.. 
T Consensus       176 PLC~ewld~~~~~~~~gNyvAiGtmdp~IeIWDLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n~~~  255 (463)
T KOG0270|consen  176 PLCIEWLDHGSKSGGAGNYVAIGTMDPEIEIWDLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWNRNF  255 (463)
T ss_pred             chhhhhhhcCCCCCCCcceEEEeccCceeEEeccccccccccceeechhhhhhhhhhcccccccccchHHHHHHHhcccc
Confidence            357777765   223346999999999999999753211       0        0      01369999999999865 


Q ss_pred             CCEEEEeeCCCeEEEEECCCCceeEEeeCCcccEEEEEECCCCCeEEEEecCCCeEEEEecCCcc-eeeeecCCCCCCCC
Q 021247           72 GIIAASASLDSFVRVFDVDTNASIATLEASPSEVWQMQFDPKGTTLAVAGGGSASVKLWDTATWN-LIATLSIPRPEGLK  150 (315)
Q Consensus        72 g~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~~d~~~~~-~~~~~~~~~~~~~~  150 (315)
                      .+.|+|||.|.+|++||+.++++..++..|..+|.++.|+|....++++|+.|+++.+.|.|... .-..+.        
T Consensus       256 ~nVLaSgsaD~TV~lWD~~~g~p~~s~~~~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~~~~s~~~wk--------  327 (463)
T KOG0270|consen  256 RNVLASGSADKTVKLWDVDTGKPKSSITHHGKKVQTLEWHPYEPSVLLSGSYDGTVALKDCRDPSNSGKEWK--------  327 (463)
T ss_pred             ceeEEecCCCceEEEEEcCCCCcceehhhcCCceeEEEecCCCceEEEeccccceEEeeeccCccccCceEE--------
Confidence            47999999999999999999999999999999999999999999999999999999999998411 111111        


Q ss_pred             CCccCCCCcceEEEEECCCC-CEEEEecCCCcEEEEEcccc-eeeeeecCCccceEEEEEcCCCCcEEEEEeCCCeEEEE
Q 021247          151 PTDKSSSKKFVLSVAWSPDG-RRIACGSMDGTISVFDVTRA-KFLHHLEGHFMPVRSLVYSPVDPRVLFSASDDTHVHMY  228 (315)
Q Consensus       151 ~~~~~~~~~~i~~~~~~~~~-~~l~~~s~dg~i~i~d~~~~-~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~~w  228 (315)
                            ....|-.++|.|.. ..+++++.||.++-+|+|.. +++..++.|..+|.++.+++..+.++++++.|+.+++|
T Consensus       328 ------~~g~VEkv~w~~~se~~f~~~tddG~v~~~D~R~~~~~vwt~~AHd~~ISgl~~n~~~p~~l~t~s~d~~Vklw  401 (463)
T KOG0270|consen  328 ------FDGEVEKVAWDPHSENSFFVSTDDGTVYYFDIRNPGKPVWTLKAHDDEISGLSVNIQTPGLLSTASTDKVVKLW  401 (463)
T ss_pred             ------eccceEEEEecCCCceeEEEecCCceEEeeecCCCCCceeEEEeccCCcceEEecCCCCcceeeccccceEEEE
Confidence                  12237889999864 47788999999999999865 88899999999999999999899999999999999999


Q ss_pred             eCCCCee--EEEeecccccEEEEEEcCCCC-eEEEEeCCCcEEEEecCcccee
Q 021247          229 DAEGKSL--VTAMSGHASWVLSVDASPDGA-AITTGSSDRTVKLWDLNMRAAM  278 (315)
Q Consensus       229 d~~~~~~--~~~~~~~~~~i~~~~~~~~~~-~l~s~~~d~~i~iwd~~~~~~~  278 (315)
                      +......  +....-..+...+.++.|+-. +++.|+..+.++|||+.+...+
T Consensus       402 ~~~~~~~~~v~~~~~~~~rl~c~~~~~~~a~~la~GG~k~~~~vwd~~~~~~V  454 (463)
T KOG0270|consen  402 KFDVDSPKSVKEHSFKLGRLHCFALDPDVAFTLAFGGEKAVLRVWDIFTNSPV  454 (463)
T ss_pred             eecCCCCcccccccccccceeecccCCCcceEEEecCccceEEEeecccChhH
Confidence            9764322  211111122345666777643 6788888889999999876544

>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]

Probab=99.95  E-value=1.4e-25  Score=183.40  Aligned_cols=275  Identities=20%  Similarity=0.324  Sum_probs=213.1

Q ss_pred             cceEEEEEeecCCCCCcEEEEeeCCCcEEEEcCCCCcceeeccccccceEEEEeCCCCCEEEEeeCCCeEEEEECCCCc-
Q 021247           15 ESVWAVTWVPATETRPALLLTGSLDETVKLWRPDDMQLERTNTGHCLGVVSVAAHPSGIIAASASLDSFVRVFDVDTNA-   93 (315)
Q Consensus        15 ~~v~~v~~~~~~~~~~~~l~sgs~d~~v~~w~~~~~~~~~~~~~h~~~v~~~~~~~~g~~l~s~~~d~~i~~w~~~~~~-   93 (315)
                      .-|.||+|.+.+.     ++||.++|.|.||+..+.+..++...|.++|.+++.-.+|.++- |+.|+.|-.||-+-.+ 
T Consensus       247 k~Vl~v~F~engd-----viTgDS~G~i~Iw~~~~~~~~k~~~aH~ggv~~L~~lr~GtllS-GgKDRki~~Wd~~y~k~  320 (626)
T KOG2106|consen  247 KFVLCVTFLENGD-----VITGDSGGNILIWSKGTNRISKQVHAHDGGVFSLCMLRDGTLLS-GGKDRKIILWDDNYRKL  320 (626)
T ss_pred             eEEEEEEEcCCCC-----EEeecCCceEEEEeCCCceEEeEeeecCCceEEEEEecCccEee-cCccceEEecccccccc
Confidence            5799999998776     89999999999999998888888779999999999999997765 9999999999832110 


Q ss_pred             ----------eeE-----------------------------EeeCCcccEEEEEECCCCCeEEEEecCCCeEEEEecCC
Q 021247           94 ----------SIA-----------------------------TLEASPSEVWQMQFDPKGTTLAVAGGGSASVKLWDTAT  134 (315)
Q Consensus        94 ----------~~~-----------------------------~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~~d~~~  134 (315)
                                .++                             ....|.+..|.++.+|+.+.+ ++++.|+.+++|+  .
T Consensus       321 r~~elPe~~G~iRtv~e~~~di~vGTtrN~iL~Gt~~~~f~~~v~gh~delwgla~hps~~q~-~T~gqdk~v~lW~--~  397 (626)
T KOG2106|consen  321 RETELPEQFGPIRTVAEGKGDILVGTTRNFILQGTLENGFTLTVQGHGDELWGLATHPSKNQL-LTCGQDKHVRLWN--D  397 (626)
T ss_pred             ccccCchhcCCeeEEecCCCcEEEeeccceEEEeeecCCceEEEEecccceeeEEcCCChhhe-eeccCcceEEEcc--C
Confidence                      000                             113456678999999997754 6888999999999  3


Q ss_pred             cceeeeecCCCCCCCCCCccCCCCcceEEEEECCCCCEEEEecCCCcEEEEEcccceeeeeecCCccceEEEEEcCCCCc
Q 021247          135 WNLIATLSIPRPEGLKPTDKSSSKKFVLSVAWSPDGRRIACGSMDGTISVFDVTRAKFLHHLEGHFMPVRSLVYSPVDPR  214 (315)
Q Consensus       135 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~s~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~  214 (315)
                      .++..+..+              .++..++.|+|.| .++.|+..|...+.|.++...+..-.. +.++..++|+| ++.
T Consensus       398 ~k~~wt~~~--------------~d~~~~~~fhpsg-~va~Gt~~G~w~V~d~e~~~lv~~~~d-~~~ls~v~ysp-~G~  460 (626)
T KOG2106|consen  398 HKLEWTKII--------------EDPAECADFHPSG-VVAVGTATGRWFVLDTETQDLVTIHTD-NEQLSVVRYSP-DGA  460 (626)
T ss_pred             CceeEEEEe--------------cCceeEeeccCcc-eEEEeeccceEEEEecccceeEEEEec-CCceEEEEEcC-CCC
Confidence            344443322              2236799999999 999999999999999998655544443 88999999999 678


Q ss_pred             EEEEEeCCCeEEEEeCCC-CeeEEEe-ecccccEEEEEEcCCCCeEEEEeCCCcEEEEecCccce---ehcc--------
Q 021247          215 VLFSASDDTHVHMYDAEG-KSLVTAM-SGHASWVLSVDASPDGAAITTGSSDRTVKLWDLNMRAA---MQSM--------  281 (315)
Q Consensus       215 ~l~s~~~d~~i~~wd~~~-~~~~~~~-~~~~~~i~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~---~~~~--------  281 (315)
                      +|+.|+.|+.|++|.... +...... ..+..+|+.++|++|+++|.+-+.|-.|..|.-...+.   .+.+        
T Consensus       461 ~lAvgs~d~~iyiy~Vs~~g~~y~r~~k~~gs~ithLDwS~Ds~~~~~~S~d~eiLyW~~~~~~~~ts~kDvkW~t~~c~  540 (626)
T KOG2106|consen  461 FLAVGSHDNHIYIYRVSANGRKYSRVGKCSGSPITHLDWSSDSQFLVSNSGDYEILYWKPSECKQITSVKDVKWATYTCT  540 (626)
T ss_pred             EEEEecCCCeEEEEEECCCCcEEEEeeeecCceeEEeeecCCCceEEeccCceEEEEEccccCcccceecceeeeeeEEE
Confidence            999999999999998753 2222222 33458899999999999999999999999994322111   1110        


Q ss_pred             -------cccccceEEEEEeeCCCEEEEEeCCCcEEEeecC
Q 021247          282 -------TNHTDQVWGVSFRPLGGRVVSVSDDKSISLYEYS  315 (315)
Q Consensus       282 -------~~~~~~v~~~~~s~~~~~l~s~~~d~~i~i~~~~  315 (315)
                             ..|...+..++-+.+...+|++.+.|+|+||.+.
T Consensus       541 lGF~v~g~s~~t~i~a~~rs~~~~~lA~gdd~g~v~lf~yP  581 (626)
T KOG2106|consen  541 LGFEVFGGSDGTDINAVARSHCEKLLASGDDFGKVHLFSYP  581 (626)
T ss_pred             EEEEEecccCCchHHHhhhhhhhhhhhccccCceEEEEccc
Confidence                   1244456677777778888999999999999873

>KOG1274 consensus WD40 repeat protein [General function prediction only]

Probab=99.95  E-value=1.3e-25  Score=195.28  Aligned_cols=242  Identities=19%  Similarity=0.267  Sum_probs=198.3

Q ss_pred             cccccceEEEEeCCCCCEEEEeeCCCeEEEEECCCC-ceeEEeeCCcccEEEEEECCCCCeEEEEecCCCeEEEEecCCc
Q 021247           57 TGHCLGVVSVAAHPSGIIAASASLDSFVRVFDVDTN-ASIATLEASPSEVWQMQFDPKGTTLAVAGGGSASVKLWDTATW  135 (315)
Q Consensus        57 ~~h~~~v~~~~~~~~g~~l~s~~~d~~i~~w~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~~d~~~~  135 (315)
                      .+|+.+.+.+++.|+|..+.+++.||.|++|+.... ....++..+...+.+++..  ++ .+++|+.+++|.+|....+
T Consensus        10 yaht~G~t~i~~d~~gefi~tcgsdg~ir~~~~~sd~e~P~ti~~~g~~v~~ia~~--s~-~f~~~s~~~tv~~y~fps~   86 (933)
T KOG1274|consen   10 YAHTGGLTLICYDPDGEFICTCGSDGDIRKWKTNSDEEEPETIDISGELVSSIACY--SN-HFLTGSEQNTVLRYKFPSG   86 (933)
T ss_pred             hhccCceEEEEEcCCCCEEEEecCCCceEEeecCCcccCCchhhccCceeEEEeec--cc-ceEEeeccceEEEeeCCCC
Confidence            579999999999999999999999999999998776 4455555466667776654  33 4568899999999987664


Q ss_pred             ceeeeecCCCCCCCCCCccCCCCcceEEEEECCCCCEEEEecCCCcEEEEEcccceeeeeecCCccceEEEEEcCCCCcE
Q 021247          136 NLIATLSIPRPEGLKPTDKSSSKKFVLSVAWSPDGRRIACGSMDGTISVFDVTRAKFLHHLEGHFMPVRSLVYSPVDPRV  215 (315)
Q Consensus       136 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~s~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~  215 (315)
                      +.-..+             ....-++++++++-+|++++.|+.|-.|++-++........+++|..+|.++.|+| ++.+
T Consensus        87 ~~~~iL-------------~Rftlp~r~~~v~g~g~~iaagsdD~~vK~~~~~D~s~~~~lrgh~apVl~l~~~p-~~~f  152 (933)
T KOG1274|consen   87 EEDTIL-------------ARFTLPIRDLAVSGSGKMIAAGSDDTAVKLLNLDDSSQEKVLRGHDAPVLQLSYDP-KGNF  152 (933)
T ss_pred             Ccccee-------------eeeeccceEEEEecCCcEEEeecCceeEEEEeccccchheeecccCCceeeeeEcC-CCCE
Confidence            432111             11123488999999999999999999999999998888899999999999999999 7889


Q ss_pred             EEEEeCCCeEEEEeCCCCeeEEEeec-------c-cccEEEEEEcCCCCeEEEEeCCCcEEEEecCccceehcccc--cc
Q 021247          216 LFSASDDTHVHMYDAEGKSLVTAMSG-------H-ASWVLSVDASPDGAAITTGSSDRTVKLWDLNMRAAMQSMTN--HT  285 (315)
Q Consensus       216 l~s~~~d~~i~~wd~~~~~~~~~~~~-------~-~~~i~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~--~~  285 (315)
                      |++.+-||.+++||++.+.+...+.+       . ...+..++|+|++..++..+.|+.|++|+.+.++....+..  +.
T Consensus       153 LAvss~dG~v~iw~~~~~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~~~d~~Vkvy~r~~we~~f~Lr~~~~s  232 (933)
T KOG1274|consen  153 LAVSSCDGKVQIWDLQDGILSKTLTGVDKDNEFILSRICTRLAWHPKGGTLAVPPVDNTVKVYSRKGWELQFKLRDKLSS  232 (933)
T ss_pred             EEEEecCceEEEEEcccchhhhhcccCCccccccccceeeeeeecCCCCeEEeeccCCeEEEEccCCceeheeecccccc
Confidence            99999999999999998876655432       1 34467789999988899999999999999998877655432  33


Q ss_pred             cceEEEEEeeCCCEEEEEeCCCcEEEeecC
Q 021247          286 DQVWGVSFRPLGGRVVSVSDDKSISLYEYS  315 (315)
Q Consensus       286 ~~v~~~~~s~~~~~l~s~~~d~~i~i~~~~  315 (315)
                      ..+..+.|+|+|.|||+++.||.|.|||+.
T Consensus       233 s~~~~~~wsPnG~YiAAs~~~g~I~vWnv~  262 (933)
T KOG1274|consen  233 SKFSDLQWSPNGKYIAASTLDGQILVWNVD  262 (933)
T ss_pred             cceEEEEEcCCCcEEeeeccCCcEEEEecc
Confidence            448899999999999999999999999974

>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]

Probab=99.95  E-value=1.1e-25  Score=190.33  Aligned_cols=294  Identities=24%  Similarity=0.338  Sum_probs=213.6

Q ss_pred             chhhhhhccccceEEEEEeecCCCCCcEEEEeeCCCcEEEEcCCCCcc--eeeccccccceEEEEeCCCCCEEEEeeCCC
Q 021247            5 GLKSVENAHEESVWAVTWVPATETRPALLLTGSLDETVKLWRPDDMQL--ERTNTGHCLGVVSVAAHPSGIIAASASLDS   82 (315)
Q Consensus         5 ~~~~~~~~h~~~v~~v~~~~~~~~~~~~l~sgs~d~~v~~w~~~~~~~--~~~~~~h~~~v~~~~~~~~g~~l~s~~~d~   82 (315)
                      +....+.+|..+|+|+.|.|... ..+.+++|+.|+.|.+|.+....+  ...+.+|...+.++.-  .-....+...|+
T Consensus        45 ~i~t~l~GH~a~VnC~~~l~~s~-~~a~~vsG~sD~~v~lW~l~~~~~~~i~~~~g~~~~~~cv~a--~~~~~~~~~ad~  121 (764)
T KOG1063|consen   45 LIVTTLDGHVARVNCVHWLPTSE-IVAEMVSGDSDGRVILWKLRDEYLIKIYTIQGHCKECVCVVA--RSSVMTCKAADG  121 (764)
T ss_pred             eeEEeccCCccceEEEEEccccc-ccceEEEccCCCcEEEEEEeehheEEEEeecCcceeEEEEEe--eeeEEEeeccCc
Confidence            44556789999999999999876 677999999999999999874433  3456667666665543  223333347899


Q ss_pred             eEEEEECCCCc--eeEEeeCCccc--EEEEEECC-CCCeEEEEecCCCeEEEEecCCcceeeeecCCCCCCCCCCccCCC
Q 021247           83 FVRVFDVDTNA--SIATLEASPSE--VWQMQFDP-KGTTLAVAGGGSASVKLWDTATWNLIATLSIPRPEGLKPTDKSSS  157 (315)
Q Consensus        83 ~i~~w~~~~~~--~~~~~~~~~~~--v~~~~~~~-~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~  157 (315)
                      ++++||.+..+  +...+......  ..+++..| .+..+++.|+.+..|.++.-...+.....           ...+|
T Consensus       122 ~v~vw~~~~~e~~~~~~~rf~~k~~ipLcL~~~~~~~~~lla~Ggs~~~v~~~s~~~d~f~~v~-----------el~GH  190 (764)
T KOG1063|consen  122 TVSVWDKQQDEVFLLAVLRFEIKEAIPLCLAALKNNKTFLLACGGSKFVVDLYSSSADSFARVA-----------ELEGH  190 (764)
T ss_pred             eEEEeecCCCceeeehheehhhhhHhhHHHhhhccCCcEEEEecCcceEEEEeccCCcceeEEE-----------Eeecc
Confidence            99999996554  22222222222  23445555 45566677777788888865533222222           23478


Q ss_pred             CcceEEEEECCCCC---EEEEecCCCcEEEEEcccce---------------------eeee----------ecCCccce
Q 021247          158 KKFVLSVAWSPDGR---RIACGSMDGTISVFDVTRAK---------------------FLHH----------LEGHFMPV  203 (315)
Q Consensus       158 ~~~i~~~~~~~~~~---~l~~~s~dg~i~i~d~~~~~---------------------~~~~----------~~~~~~~v  203 (315)
                      .++|.+++|...+.   +|+++|+|..|+||.+.-+.                     ....          +.+|..-|
T Consensus       191 ~DWIrsl~f~~~~~~~~~laS~SQD~yIRiW~i~~~~~~~~~~~e~~~t~~~~~~~f~~l~~i~~~is~eall~GHeDWV  270 (764)
T KOG1063|consen  191 TDWIRSLAFARLGGDDLLLASSSQDRYIRIWRIVLGDDEDSNEREDSLTTLSNLPVFMILEEIQYRISFEALLMGHEDWV  270 (764)
T ss_pred             chhhhhhhhhccCCCcEEEEecCCceEEEEEEEEecCCccccccccccccccCCceeeeeeeEEEEEehhhhhcCcccce
Confidence            89999999987443   77899999999999864222                     1111          23899999


Q ss_pred             EEEEEcCCCCcEEEEEeCCCeEEEEeCCCCe-------eEEEeecccccEEEEEEcCCCCeEEEEeCCCcEEEEecCcc-
Q 021247          204 RSLVYSPVDPRVLFSASDDTHVHMYDAEGKS-------LVTAMSGHASWVLSVDASPDGAAITTGSSDRTVKLWDLNMR-  275 (315)
Q Consensus       204 ~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~-------~~~~~~~~~~~i~~~~~~~~~~~l~s~~~d~~i~iwd~~~~-  275 (315)
                      .++.|+| ....|++++.|.++.+|.....+       .+..+.+..+...+..|+|++..+++-+.-|-.++|..... 
T Consensus       271 ~sv~W~p-~~~~LLSASaDksmiiW~pd~~tGiWv~~vRlGe~gg~a~GF~g~lw~~n~~~ii~~g~~Gg~hlWkt~d~~  349 (764)
T KOG1063|consen  271 YSVWWHP-EGLDLLSASADKSMIIWKPDENTGIWVDVVRLGEVGGSAGGFWGGLWSPNSNVIIAHGRTGGFHLWKTKDKT  349 (764)
T ss_pred             EEEEEcc-chhhheecccCcceEEEecCCccceEEEEEEeecccccccceeeEEEcCCCCEEEEecccCcEEEEeccCcc
Confidence            9999999 45689999999999999876541       12233344566889999999999999999999999983332 


Q ss_pred             --ceehcccccccceEEEEEeeCCCEEEEEeCCCcEEEee
Q 021247          276 --AAMQSMTNHTDQVWGVSFRPLGGRVVSVSDDKSISLYE  313 (315)
Q Consensus       276 --~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~i~i~~  313 (315)
                        .....+.+|.+.|..++|+|.|.+|+++|.|.+-|||-
T Consensus       350 ~w~~~~~iSGH~~~V~dv~W~psGeflLsvs~DQTTRlFa  389 (764)
T KOG1063|consen  350 FWTQEPVISGHVDGVKDVDWDPSGEFLLSVSLDQTTRLFA  389 (764)
T ss_pred             ceeeccccccccccceeeeecCCCCEEEEeccccceeeec
Confidence              33455789999999999999999999999999999984

>KOG4328 consensus WD40 protein [Function unknown]

Probab=99.95  E-value=4.9e-26  Score=183.92  Aligned_cols=289  Identities=19%  Similarity=0.266  Sum_probs=212.4

Q ss_pred             hhhhhccccceEEEEEeecCCCCCcEEEEeeCCCcEEEEcCCCCc----ceeeccccccceEEEEeCCCC-CEEEEeeCC
Q 021247            7 KSVENAHEESVWAVTWVPATETRPALLLTGSLDETVKLWRPDDMQ----LERTNTGHCLGVVSVAAHPSG-IIAASASLD   81 (315)
Q Consensus         7 ~~~~~~h~~~v~~v~~~~~~~~~~~~l~sgs~d~~v~~w~~~~~~----~~~~~~~h~~~v~~~~~~~~g-~~l~s~~~d   81 (315)
                      ..+++-|++.|++++|.|..+  ..++++|..-|.|-+||+.+.+    -...+..|..+|.++.|+|.. ..+++.+.|
T Consensus       179 ~~v~kv~~~Rit~l~fHPt~~--~~lva~GdK~G~VG~Wn~~~~~~d~d~v~~f~~hs~~Vs~l~F~P~n~s~i~ssSyD  256 (498)
T KOG4328|consen  179 LNVAKVTDRRITSLAFHPTEN--RKLVAVGDKGGQVGLWNFGTQEKDKDGVYLFTPHSGPVSGLKFSPANTSQIYSSSYD  256 (498)
T ss_pred             cceeEecccceEEEEecccCc--ceEEEEccCCCcEEEEecCCCCCccCceEEeccCCccccceEecCCChhheeeeccC
Confidence            446778999999999999875  3589999999999999985322    234466799999999999976 688899999


Q ss_pred             CeEEEEECCCCceeE--EeeCCcccEEEEEECCCCCeEEEEecCCCeEEEEecCCcce-eeeecCCCCCCCCCCccCCCC
Q 021247           82 SFVRVFDVDTNASIA--TLEASPSEVWQMQFDPKGTTLAVAGGGSASVKLWDTATWNL-IATLSIPRPEGLKPTDKSSSK  158 (315)
Q Consensus        82 ~~i~~w~~~~~~~~~--~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~~d~~~~~~-~~~~~~~~~~~~~~~~~~~~~  158 (315)
                      |+||+=|++.+....  ..+........++|+.....+++ ++.-|...+||+++.+. ...+.             .|+
T Consensus       257 GtiR~~D~~~~i~e~v~s~~~d~~~fs~~d~~~e~~~vl~-~~~~G~f~~iD~R~~~s~~~~~~-------------lh~  322 (498)
T KOG4328|consen  257 GTIRLQDFEGNISEEVLSLDTDNIWFSSLDFSAESRSVLF-GDNVGNFNVIDLRTDGSEYENLR-------------LHK  322 (498)
T ss_pred             ceeeeeeecchhhHHHhhcCccceeeeeccccCCCccEEE-eecccceEEEEeecCCccchhhh-------------hhh
Confidence            999999998865432  23223344567777776665544 55556999999987543 22222             244


Q ss_pred             cceEEEEECCCC-CEEEEecCCCcEEEEEcccceee----eeecCCccceEEEEEcCCCCcEEEEEeCCCeEEEEeCC--
Q 021247          159 KFVLSVAWSPDG-RRIACGSMDGTISVFDVTRAKFL----HHLEGHFMPVRSLVYSPVDPRVLFSASDDTHVHMYDAE--  231 (315)
Q Consensus       159 ~~i~~~~~~~~~-~~l~~~s~dg~i~i~d~~~~~~~----~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~--  231 (315)
                      ..|.+++++|.. .+|++++.|++.+|||++..+..    -....|..+|.+..|+|.++. |++-+.|..|+|||..  
T Consensus       323 kKI~sv~~NP~~p~~laT~s~D~T~kIWD~R~l~~K~sp~lst~~HrrsV~sAyFSPs~gt-l~TT~~D~~IRv~dss~~  401 (498)
T KOG4328|consen  323 KKITSVALNPVCPWFLATASLDQTAKIWDLRQLRGKASPFLSTLPHRRSVNSAYFSPSGGT-LLTTCQDNEIRVFDSSCI  401 (498)
T ss_pred             cccceeecCCCCchheeecccCcceeeeehhhhcCCCCcceecccccceeeeeEEcCCCCc-eEeeccCCceEEeecccc
Confidence            469999999965 46789999999999999855432    334568999999999998777 8899999999999984  


Q ss_pred             --CCeeEEEeeccc----cc--EEEEEEcCCCCeEEEEeCCCcEEEEecCccceehccccccc-ceEE-EEEeeCCCEE-
Q 021247          232 --GKSLVTAMSGHA----SW--VLSVDASPDGAAITTGSSDRTVKLWDLNMRAAMQSMTNHTD-QVWG-VSFRPLGGRV-  300 (315)
Q Consensus       232 --~~~~~~~~~~~~----~~--i~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~-~v~~-~~~s~~~~~l-  300 (315)
                        .-.....+ .|+    -+  +....|.|+..++++|-.-..|-|+|-+.++.+..+-.... .|.+ ..|+|-+..+ 
T Consensus       402 sa~~~p~~~I-~Hn~~t~RwlT~fKA~W~P~~~li~vg~~~r~IDv~~~~~~q~v~el~~P~~~tI~~vn~~HP~~~~~~  480 (498)
T KOG4328|consen  402 SAKDEPLGTI-PHNNRTGRWLTPFKAAWDPDYNLIVVGRYPRPIDVFDGNGGQMVCELHDPESSTIPSVNEFHPMRDTLA  480 (498)
T ss_pred             cccCCcccee-eccCcccccccchhheeCCCccEEEEeccCcceeEEcCCCCEEeeeccCccccccccceeeccccccee
Confidence              22222222 232    22  34567999999999999999999999988876655433222 3444 4899987745 


Q ss_pred             EEEeCCCcEEEee
Q 021247          301 VSVSDDKSISLYE  313 (315)
Q Consensus       301 ~s~~~d~~i~i~~  313 (315)
                      +.++..|.|.||.
T Consensus       481 aG~~s~Gki~vft  493 (498)
T KOG4328|consen  481 AGGNSSGKIYVFT  493 (498)
T ss_pred             ccCCccceEEEEe
Confidence            4555668998884

>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]

Probab=99.95  E-value=4.7e-24  Score=174.60  Aligned_cols=287  Identities=18%  Similarity=0.248  Sum_probs=220.4

Q ss_pred             ccceEEEEEeecCCCCCcEEEEeeCCCcEEEEcCCCCcceeec---cc-cccceEEEEeCCCCCEEEEeeCCCeEEEEEC
Q 021247           14 EESVWAVTWVPATETRPALLLTGSLDETVKLWRPDDMQLERTN---TG-HCLGVVSVAAHPSGIIAASASLDSFVRVFDV   89 (315)
Q Consensus        14 ~~~v~~v~~~~~~~~~~~~l~sgs~d~~v~~w~~~~~~~~~~~---~~-h~~~v~~~~~~~~g~~l~s~~~d~~i~~w~~   89 (315)
                      .+.|...+|.|..++   ++++.+ -+.+.+|+++...+.+..   .+ .+..|.|++|.++|.. ++|..+|.|.+|+.
T Consensus       200 ne~v~~a~FHPtd~n---liit~G-k~H~~Fw~~~~~~l~k~~~~fek~ekk~Vl~v~F~engdv-iTgDS~G~i~Iw~~  274 (626)
T KOG2106|consen  200 NEVVFLATFHPTDPN---LIITCG-KGHLYFWTLRGGSLVKRQGIFEKREKKFVLCVTFLENGDV-ITGDSGGNILIWSK  274 (626)
T ss_pred             cceEEEEEeccCCCc---EEEEeC-CceEEEEEccCCceEEEeeccccccceEEEEEEEcCCCCE-EeecCCceEEEEeC
Confidence            467889999997753   566655 478999999887765542   22 2367999999999865 67999999999999


Q ss_pred             CCCceeEEeeCCcccEEEEEECCCCCeEEEEecCCCeEEEEecCCcceeeeecCCCCCCCCCC-----------------
Q 021247           90 DTNASIATLEASPSEVWQMQFDPKGTTLAVAGGGSASVKLWDTATWNLIATLSIPRPEGLKPT-----------------  152 (315)
Q Consensus        90 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~-----------------  152 (315)
                      .+.+..+....|++.|.+++.-.+|..  ++|+.|+.|..|| ...+.++...+|...+....                 
T Consensus       275 ~~~~~~k~~~aH~ggv~~L~~lr~Gtl--lSGgKDRki~~Wd-~~y~k~r~~elPe~~G~iRtv~e~~~di~vGTtrN~i  351 (626)
T KOG2106|consen  275 GTNRISKQVHAHDGGVFSLCMLRDGTL--LSGGKDRKIILWD-DNYRKLRETELPEQFGPIRTVAEGKGDILVGTTRNFI  351 (626)
T ss_pred             CCceEEeEeeecCCceEEEEEecCccE--eecCccceEEecc-ccccccccccCchhcCCeeEEecCCCcEEEeeccceE
Confidence            888777666689999999999888763  4699999999999 44455555555443222110                 


Q ss_pred             -----------ccCCCCcceEEEEECCCCCEEEEecCCCcEEEEEcccceeeeeecCCccceEEEEEcCCCCcEEEEEeC
Q 021247          153 -----------DKSSSKKFVLSVAWSPDGRRIACGSMDGTISVFDVTRAKFLHHLEGHFMPVRSLVYSPVDPRVLFSASD  221 (315)
Q Consensus       153 -----------~~~~~~~~i~~~~~~~~~~~l~~~s~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~  221 (315)
                                 ....|.+....++.+|+.+++++++.|+.+++|+  ..++.-.. .-..+..++.|+|.+  .++.|..
T Consensus       352 L~Gt~~~~f~~~v~gh~delwgla~hps~~q~~T~gqdk~v~lW~--~~k~~wt~-~~~d~~~~~~fhpsg--~va~Gt~  426 (626)
T KOG2106|consen  352 LQGTLENGFTLTVQGHGDELWGLATHPSKNQLLTCGQDKHVRLWN--DHKLEWTK-IIEDPAECADFHPSG--VVAVGTA  426 (626)
T ss_pred             EEeeecCCceEEEEecccceeeEEcCCChhheeeccCcceEEEcc--CCceeEEE-EecCceeEeeccCcc--eEEEeec
Confidence                       0112334456789999999999999999999999  23322211 123688999999965  8999999


Q ss_pred             CCeEEEEeCCCCeeEEEeecccccEEEEEEcCCCCeEEEEeCCCcEEEEecCcc-ceehccc-ccccceEEEEEeeCCCE
Q 021247          222 DTHVHMYDAEGKSLVTAMSGHASWVLSVDASPDGAAITTGSSDRTVKLWDLNMR-AAMQSMT-NHTDQVWGVSFRPLGGR  299 (315)
Q Consensus       222 d~~i~~wd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~d~~i~iwd~~~~-~~~~~~~-~~~~~v~~~~~s~~~~~  299 (315)
                      .|...+.|.++...+..-.. +.++..+.++|+|.+||.|+.|+.|++|.+... ....... .+..+|+.+.||+|+++
T Consensus       427 ~G~w~V~d~e~~~lv~~~~d-~~~ls~v~ysp~G~~lAvgs~d~~iyiy~Vs~~g~~y~r~~k~~gs~ithLDwS~Ds~~  505 (626)
T KOG2106|consen  427 TGRWFVLDTETQDLVTIHTD-NEQLSVVRYSPDGAFLAVGSHDNHIYIYRVSANGRKYSRVGKCSGSPITHLDWSSDSQF  505 (626)
T ss_pred             cceEEEEecccceeEEEEec-CCceEEEEEcCCCCEEEEecCCCeEEEEEECCCCcEEEEeeeecCceeEEeeecCCCce
Confidence            99999999998766655555 888999999999999999999999999988653 3333332 23478999999999999


Q ss_pred             EEEEeCCCcEEEeec
Q 021247          300 VVSVSDDKSISLYEY  314 (315)
Q Consensus       300 l~s~~~d~~i~i~~~  314 (315)
                      |.+-+.|-.|..|+-
T Consensus       506 ~~~~S~d~eiLyW~~  520 (626)
T KOG2106|consen  506 LVSNSGDYEILYWKP  520 (626)
T ss_pred             EEeccCceEEEEEcc
Confidence            999999999999953

>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]

Probab=99.95  E-value=1.7e-25  Score=172.53  Aligned_cols=233  Identities=18%  Similarity=0.263  Sum_probs=184.1

Q ss_pred             hhhccccceEEEEEeecCCCCCcEEEEeeCCCcEEEEcCCCCcceeeccccccceEEEEeCCCCCEEEEeeCCCeEEEEE
Q 021247            9 VENAHEESVWAVTWVPATETRPALLLTGSLDETVKLWRPDDMQLERTNTGHCLGVVSVAAHPSGIIAASASLDSFVRVFD   88 (315)
Q Consensus         9 ~~~~h~~~v~~v~~~~~~~~~~~~l~sgs~d~~v~~w~~~~~~~~~~~~~h~~~v~~~~~~~~g~~l~s~~~d~~i~~w~   88 (315)
                      ..-.|..++.+++|.+..     -+++|+.||.|+.+|..+... ..+..|..++.++...+....+++|++|++|++||
T Consensus        49 ~~~~~~~plL~c~F~d~~-----~~~~G~~dg~vr~~Dln~~~~-~~igth~~~i~ci~~~~~~~~vIsgsWD~~ik~wD  122 (323)
T KOG1036|consen   49 LKFKHGAPLLDCAFADES-----TIVTGGLDGQVRRYDLNTGNE-DQIGTHDEGIRCIEYSYEVGCVISGSWDKTIKFWD  122 (323)
T ss_pred             hheecCCceeeeeccCCc-----eEEEeccCceEEEEEecCCcc-eeeccCCCceEEEEeeccCCeEEEcccCccEEEEe
Confidence            345789999999999854     389999999999999977654 44567999999999999888999999999999999


Q ss_pred             CCCCceeEEeeCCcccEEEEEECCCCCeEEEEecCCCeEEEEecCCcceeeeecCCCCCCCCCCccCCCCcceEEEEECC
Q 021247           89 VDTNASIATLEASPSEVWQMQFDPKGTTLAVAGGGSASVKLWDTATWNLIATLSIPRPEGLKPTDKSSSKKFVLSVAWSP  168 (315)
Q Consensus        89 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~  168 (315)
                      ........+++.. ..|.++...  ++. ++.|..+..+.+||+++.......           ..+..+..++++++.|
T Consensus       123 ~R~~~~~~~~d~~-kkVy~~~v~--g~~-LvVg~~~r~v~iyDLRn~~~~~q~-----------reS~lkyqtR~v~~~p  187 (323)
T KOG1036|consen  123 PRNKVVVGTFDQG-KKVYCMDVS--GNR-LVVGTSDRKVLIYDLRNLDEPFQR-----------RESSLKYQTRCVALVP  187 (323)
T ss_pred             ccccccccccccC-ceEEEEecc--CCE-EEEeecCceEEEEEcccccchhhh-----------ccccceeEEEEEEEec
Confidence            9876555555543 478888775  344 456778999999999975433211           1123456699999999


Q ss_pred             CCCEEEEecCCCcEEEEEcccc----eeeeeecCCc---------cceEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCee
Q 021247          169 DGRRIACGSMDGTISVFDVTRA----KFLHHLEGHF---------MPVRSLVYSPVDPRVLFSASDDTHVHMYDAEGKSL  235 (315)
Q Consensus       169 ~~~~l~~~s~dg~i~i~d~~~~----~~~~~~~~~~---------~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~  235 (315)
                      ++.-+++++-||+|.+=.+...    .....++.|.         .||++++|+|. -..|++|+.||.|.+||+..++.
T Consensus       188 n~eGy~~sSieGRVavE~~d~s~~~~skkyaFkCHr~~~~~~~~~yPVNai~Fhp~-~~tfaTgGsDG~V~~Wd~~~rKr  266 (323)
T KOG1036|consen  188 NGEGYVVSSIEGRVAVEYFDDSEEAQSKKYAFKCHRLSEKDTEIIYPVNAIAFHPI-HGTFATGGSDGIVNIWDLFNRKR  266 (323)
T ss_pred             CCCceEEEeecceEEEEccCCchHHhhhceeEEeeecccCCceEEEEeceeEeccc-cceEEecCCCceEEEccCcchhh
Confidence            9888999999999877544333    2223334442         38999999995 56899999999999999999988


Q ss_pred             EEEeecccccEEEEEEcCCCCeEEEEeC
Q 021247          236 VTAMSGHASWVLSVDASPDGAAITTGSS  263 (315)
Q Consensus       236 ~~~~~~~~~~i~~~~~~~~~~~l~s~~~  263 (315)
                      +.++..-...|.+++|+.+|..||.++.
T Consensus       267 l~q~~~~~~SI~slsfs~dG~~LAia~s  294 (323)
T KOG1036|consen  267 LKQLAKYETSISSLSFSMDGSLLAIASS  294 (323)
T ss_pred             hhhccCCCCceEEEEeccCCCeEEEEec
Confidence            8888777778999999999999999875

>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]

Probab=99.95  E-value=9.8e-26  Score=175.23  Aligned_cols=293  Identities=18%  Similarity=0.283  Sum_probs=219.5

Q ss_pred             hhhhccccceEEEEEeec-CCCCCcEEEEeeCCCcEEEEcCCCCc---ceee-cc-ccccceEEEEeCCC----CCEEEE
Q 021247            8 SVENAHEESVWAVTWVPA-TETRPALLLTGSLDETVKLWRPDDMQ---LERT-NT-GHCLGVVSVAAHPS----GIIAAS   77 (315)
Q Consensus         8 ~~~~~h~~~v~~v~~~~~-~~~~~~~l~sgs~d~~v~~w~~~~~~---~~~~-~~-~h~~~v~~~~~~~~----g~~l~s   77 (315)
                      .+...|..++++++|.+. ....+..+++.+. ..+.+|+.....   +.+. .. .|......+++..+    ..+++.
T Consensus        32 ~l~ed~~~~I~gv~fN~~~~~~e~~vfatvG~-~rvtiy~c~~d~~ir~lq~y~D~d~~Esfytcsw~yd~~~~~p~la~  110 (385)
T KOG1034|consen   32 HLKEDHNKPIFGVAFNSFLGCDEPQVFATVGG-NRVTIYECPGDGGIRLLQSYADEDHDESFYTCSWSYDSNTGNPFLAA  110 (385)
T ss_pred             ehhccCCCccceeeeehhcCCCCCceEEEeCC-cEEEEEEECCccceeeeeeccCCCCCcceEEEEEEecCCCCCeeEEe
Confidence            467899999999999964 3444556666664 567778754322   1221 12 25556666666542    358888


Q ss_pred             eeCCCeEEEEECCCCceeEEeeCCcccEEEEEECCCCCeEEEEecCCCeEEEEecCCcceeeeecCCCCCCCCCCccCCC
Q 021247           78 ASLDSFVRVFDVDTNASIATLEASPSEVWQMQFDPKGTTLAVAGGGSASVKLWDTATWNLIATLSIPRPEGLKPTDKSSS  157 (315)
Q Consensus        78 ~~~d~~i~~w~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~  157 (315)
                      ++.-|.||+.|+.++++...+.+|..+|..+.++|....++++++.|..|++|++++..++..+-.          ..+|
T Consensus       111 ~G~~GvIrVid~~~~~~~~~~~ghG~sINeik~~p~~~qlvls~SkD~svRlwnI~~~~Cv~VfGG----------~egH  180 (385)
T KOG1034|consen  111 GGYLGVIRVIDVVSGQCSKNYRGHGGSINEIKFHPDRPQLVLSASKDHSVRLWNIQTDVCVAVFGG----------VEGH  180 (385)
T ss_pred             ecceeEEEEEecchhhhccceeccCccchhhhcCCCCCcEEEEecCCceEEEEeccCCeEEEEecc----------cccc
Confidence            999999999999999999999999999999999999988999999999999999999988887732          2467


Q ss_pred             CcceEEEEECCCCCEEEEecCCCcEEEEEcccceeeee----------------------------ecCCccceEEEEEc
Q 021247          158 KKFVLSVAWSPDGRRIACGSMDGTISVFDVTRAKFLHH----------------------------LEGHFMPVRSLVYS  209 (315)
Q Consensus       158 ~~~i~~~~~~~~~~~l~~~s~dg~i~i~d~~~~~~~~~----------------------------~~~~~~~v~~~~~~  209 (315)
                      .+.|.++.|+++|.+|++++.|.++++|++...+....                            -..|...|.++.|.
T Consensus       181 rdeVLSvD~~~~gd~i~ScGmDhslk~W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~~~~fp~fst~diHrnyVDCvrw~  260 (385)
T KOG1034|consen  181 RDEVLSVDFSLDGDRIASCGMDHSLKLWRLNVKEFKNKLELSITYSPNKTTRPFPTPKTHFPDFSTTDIHRNYVDCVRWF  260 (385)
T ss_pred             cCcEEEEEEcCCCCeeeccCCcceEEEEecChhHHhhhhhhhcccCCCCccCcCCccccccccccccccccchHHHHHHH
Confidence            88899999999999999999999999999873322111                            11344455555554


Q ss_pred             CCCCcEEEEEeCCCeEEEEeC-CCC-------------eeEEEeeccc--ccEEEEEEcCCCCeEEEEeCCCcEEEEecC
Q 021247          210 PVDPRVLFSASDDTHVHMYDA-EGK-------------SLVTAMSGHA--SWVLSVDASPDGAAITTGSSDRTVKLWDLN  273 (315)
Q Consensus       210 ~~~~~~l~s~~~d~~i~~wd~-~~~-------------~~~~~~~~~~--~~i~~~~~~~~~~~l~s~~~d~~i~iwd~~  273 (315)
                         +.++++=+-++.|..|.. +-+             +.+..+.-..  .|....+++|-+++||.|...|.|.+||++
T Consensus       261 ---gd~ilSkscenaI~~w~pgkl~e~~~~vkp~es~~Ti~~~~~~~~c~iWfirf~~d~~~~~la~gnq~g~v~vwdL~  337 (385)
T KOG1034|consen  261 ---GDFILSKSCENAIVCWKPGKLEESIHNVKPPESATTILGEFDYPMCDIWFIRFAFDPWQKMLALGNQSGKVYVWDLD  337 (385)
T ss_pred             ---hhheeecccCceEEEEecchhhhhhhccCCCccceeeeeEeccCccceEEEEEeecHHHHHHhhccCCCcEEEEECC
Confidence               358889899999999986 211             1222232223  344456677888999999999999999998


Q ss_pred             ccceeh--cccc--cccceEEEEEeeCCCEEEEEeCCCcEEEeec
Q 021247          274 MRAAMQ--SMTN--HTDQVWGVSFRPLGGRVVSVSDDKSISLYEY  314 (315)
Q Consensus       274 ~~~~~~--~~~~--~~~~v~~~~~s~~~~~l~s~~~d~~i~i~~~  314 (315)
                      ..++..  ++..  -...|...+||.||..|+..++|++|.-||.
T Consensus       338 ~~ep~~~ttl~~s~~~~tVRQ~sfS~dgs~lv~vcdd~~Vwrwdr  382 (385)
T KOG1034|consen  338 NNEPPKCTTLTHSKSGSTVRQTSFSRDGSILVLVCDDGTVWRWDR  382 (385)
T ss_pred             CCCCccCceEEeccccceeeeeeecccCcEEEEEeCCCcEEEEEe
Confidence            876532  1211  1346889999999999999999999999985

>KOG1274 consensus WD40 repeat protein [General function prediction only]

Probab=99.95  E-value=1.5e-24  Score=188.82  Aligned_cols=273  Identities=18%  Similarity=0.262  Sum_probs=213.0

Q ss_pred             hccccceEEEEEeecCCCCCcEEEEeeCCCcEEEEcCCCC-cceeeccccccceEEEEeCCCCCEEEEeeCCCeEEEEEC
Q 021247           11 NAHEESVWAVTWVPATETRPALLLTGSLDETVKLWRPDDM-QLERTNTGHCLGVVSVAAHPSGIIAASASLDSFVRVFDV   89 (315)
Q Consensus        11 ~~h~~~v~~v~~~~~~~~~~~~l~sgs~d~~v~~w~~~~~-~~~~~~~~h~~~v~~~~~~~~g~~l~s~~~d~~i~~w~~   89 (315)
                      .+|+..-+.|+|-|+++    .|++++.||.|++|+.... +....+.-+...|.+++.  .+..|++++.+++|.++.+
T Consensus        10 yaht~G~t~i~~d~~ge----fi~tcgsdg~ir~~~~~sd~e~P~ti~~~g~~v~~ia~--~s~~f~~~s~~~tv~~y~f   83 (933)
T KOG1274|consen   10 YAHTGGLTLICYDPDGE----FICTCGSDGDIRKWKTNSDEEEPETIDISGELVSSIAC--YSNHFLTGSEQNTVLRYKF   83 (933)
T ss_pred             hhccCceEEEEEcCCCC----EEEEecCCCceEEeecCCcccCCchhhccCceeEEEee--cccceEEeeccceEEEeeC
Confidence            58999999999999886    7999999999999986544 333333336667777765  4459999999999999999


Q ss_pred             CCCceeEEeeCCcccEEEEEECCCCCeEEEEecCCCeEEEEecCCcceeeeecCCCCCCCCCCccCCCCcceEEEEECCC
Q 021247           90 DTNASIATLEASPSEVWQMQFDPKGTTLAVAGGGSASVKLWDTATWNLIATLSIPRPEGLKPTDKSSSKKFVLSVAWSPD  169 (315)
Q Consensus        90 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~  169 (315)
                      ..+..-..+....-++..++++.+|+.+ +.|++|-.|++-++........+             .+|+.+|.++.|+|+
T Consensus        84 ps~~~~~iL~Rftlp~r~~~v~g~g~~i-aagsdD~~vK~~~~~D~s~~~~l-------------rgh~apVl~l~~~p~  149 (933)
T KOG1274|consen   84 PSGEEDTILARFTLPIRDLAVSGSGKMI-AAGSDDTAVKLLNLDDSSQEKVL-------------RGHDAPVLQLSYDPK  149 (933)
T ss_pred             CCCCccceeeeeeccceEEEEecCCcEE-EeecCceeEEEEeccccchheee-------------cccCCceeeeeEcCC
Confidence            9887655555566788999999998865 56888999999988765444333             346677999999999


Q ss_pred             CCEEEEecCCCcEEEEEcccceeeeeecC-------C-ccceEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCeeEEEeec
Q 021247          170 GRRIACGSMDGTISVFDVTRAKFLHHLEG-------H-FMPVRSLVYSPVDPRVLFSASDDTHVHMYDAEGKSLVTAMSG  241 (315)
Q Consensus       170 ~~~l~~~s~dg~i~i~d~~~~~~~~~~~~-------~-~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~  241 (315)
                      +++||+.+.||.|++||+..+.....+.+       . ...+..++|+|.+ ..++....|+.|++|+..+.+....+..
T Consensus       150 ~~fLAvss~dG~v~iw~~~~~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~-g~la~~~~d~~Vkvy~r~~we~~f~Lr~  228 (933)
T KOG1274|consen  150 GNFLAVSSCDGKVQIWDLQDGILSKTLTGVDKDNEFILSRICTRLAWHPKG-GTLAVPPVDNTVKVYSRKGWELQFKLRD  228 (933)
T ss_pred             CCEEEEEecCceEEEEEcccchhhhhcccCCccccccccceeeeeeecCCC-CeEEeeccCCeEEEEccCCceeheeecc
Confidence            99999999999999999988776555432       1 3456778999954 4667777889999999998877666543


Q ss_pred             --ccccEEEEEEcCCCCeEEEEeCCCcEEEEecCccceehcccccccceEEEEEeeCCCEEEEEeCCCc
Q 021247          242 --HASWVLSVDASPDGAAITTGSSDRTVKLWDLNMRAAMQSMTNHTDQVWGVSFRPLGGRVVSVSDDKS  308 (315)
Q Consensus       242 --~~~~i~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~  308 (315)
                        +...+..+.|+|.|+|||+++.||.|.|||.++.+.    ......|.+++|.|+.+.+-....-|+
T Consensus       229 ~~~ss~~~~~~wsPnG~YiAAs~~~g~I~vWnv~t~~~----~~~~~~Vc~~aw~p~~n~it~~~~~g~  293 (933)
T KOG1274|consen  229 KLSSSKFSDLQWSPNGKYIAASTLDGQILVWNVDTHER----HEFKRAVCCEAWKPNANAITLITALGT  293 (933)
T ss_pred             cccccceEEEEEcCCCcEEeeeccCCcEEEEecccchh----ccccceeEEEecCCCCCeeEEEeeccc
Confidence              445589999999999999999999999999987221    223468999999999876654444443

>KOG0646 consensus WD40 repeat protein [General function prediction only]

Probab=99.95  E-value=1.7e-25  Score=181.16  Aligned_cols=238  Identities=18%  Similarity=0.295  Sum_probs=191.6

Q ss_pred             ccceEEEEEeecCCCCCcEEEEeeCCCcEEEEcCCCCcceeeccccccceEEEEeCCCCCEEEEeeCCCeEEEEECCC--
Q 021247           14 EESVWAVTWVPATETRPALLLTGSLDETVKLWRPDDMQLERTNTGHCLGVVSVAAHPSGIIAASASLDSFVRVFDVDT--   91 (315)
Q Consensus        14 ~~~v~~v~~~~~~~~~~~~l~sgs~d~~v~~w~~~~~~~~~~~~~h~~~v~~~~~~~~g~~l~s~~~d~~i~~w~~~~--   91 (315)
                      .++|.+++-+|.+.    +++.|.-.|.+++|.+.++.++..+.+|-..|+++.|+.||.++++||.||.|++|.+.+  
T Consensus        81 Pg~v~al~s~n~G~----~l~ag~i~g~lYlWelssG~LL~v~~aHYQ~ITcL~fs~dgs~iiTgskDg~V~vW~l~~lv  156 (476)
T KOG0646|consen   81 PGPVHALASSNLGY----FLLAGTISGNLYLWELSSGILLNVLSAHYQSITCLKFSDDGSHIITGSKDGAVLVWLLTDLV  156 (476)
T ss_pred             ccceeeeecCCCce----EEEeecccCcEEEEEeccccHHHHHHhhccceeEEEEeCCCcEEEecCCCccEEEEEEEeec
Confidence            45799998888764    566665999999999999999999999999999999999999999999999999998743  


Q ss_pred             -------CceeEEeeCCcccEEEEEECCCC-CeEEEEecCCCeEEEEecCCcceeeeecCCCCCCCCCCccCCCCcceEE
Q 021247           92 -------NASIATLEASPSEVWQMQFDPKG-TTLAVAGGGSASVKLWDTATWNLIATLSIPRPEGLKPTDKSSSKKFVLS  163 (315)
Q Consensus        92 -------~~~~~~~~~~~~~v~~~~~~~~~-~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~  163 (315)
                             -+.+..+..|.-+|.++...+.+ +..+++.+.|.++++||+..+.++.++..|..              +.+
T Consensus       157 ~a~~~~~~~p~~~f~~HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g~LLlti~fp~s--------------i~a  222 (476)
T KOG0646|consen  157 SADNDHSVKPLHIFSDHTLSITDLQIGSGGTNARLYTASEDRTIKLWDLSLGVLLLTITFPSS--------------IKA  222 (476)
T ss_pred             ccccCCCccceeeeccCcceeEEEEecCCCccceEEEecCCceEEEEEeccceeeEEEecCCc--------------cee
Confidence                   23556777888899999887763 34567889999999999999999988876654              889


Q ss_pred             EEECCCCCEEEEecCCCcEEEEEcccceeeeeecCCccceEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCeeEEEeeccc
Q 021247          164 VAWSPDGRRIACGSMDGTISVFDVTRAKFLHHLEGHFMPVRSLVYSPVDPRVLFSASDDTHVHMYDAEGKSLVTAMSGHA  243 (315)
Q Consensus       164 ~~~~~~~~~l~~~s~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~  243 (315)
                      ++.+|-++.+++|+.+|.|.+.++.....      ....+.                    .+.++. .+.....+.+|.
T Consensus       223 v~lDpae~~~yiGt~~G~I~~~~~~~~~~------~~~~v~--------------------~k~~~~-~~t~~~~~~Gh~  275 (476)
T KOG0646|consen  223 VALDPAERVVYIGTEEGKIFQNLLFKLSG------QSAGVN--------------------QKGRHE-ENTQINVLVGHE  275 (476)
T ss_pred             EEEcccccEEEecCCcceEEeeehhcCCc------cccccc--------------------cccccc-ccceeeeecccc
Confidence            99999999999999999999988743221      111111                    111111 122334556776


Q ss_pred             c--cEEEEEEcCCCCeEEEEeCCCcEEEEecCccceehcccccccceEEEEEeeC
Q 021247          244 S--WVLSVDASPDGAAITTGSSDRTVKLWDLNMRAAMQSMTNHTDQVWGVSFRPL  296 (315)
Q Consensus       244 ~--~i~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~  296 (315)
                      +  .|++++++-||.+|++|+.||+|+|||..++..++++..-.++|+.+.+.|-
T Consensus       276 ~~~~ITcLais~DgtlLlSGd~dg~VcvWdi~S~Q~iRtl~~~kgpVtnL~i~~~  330 (476)
T KOG0646|consen  276 NESAITCLAISTDGTLLLSGDEDGKVCVWDIYSKQCIRTLQTSKGPVTNLQINPL  330 (476)
T ss_pred             CCcceeEEEEecCccEEEeeCCCCCEEEEecchHHHHHHHhhhccccceeEeecc
Confidence            6  8999999999999999999999999999999999888766789999998664

>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.94  E-value=3.4e-25  Score=170.40  Aligned_cols=233  Identities=18%  Similarity=0.266  Sum_probs=185.7

Q ss_pred             hhhhccccceEEEEEeecCCCCCcEEEEeeCCCcEEEEcCCCCcceeeccccccceEEEEeCCCCC--EEEEeeCCCeEE
Q 021247            8 SVENAHEESVWAVTWVPATETRPALLLTGSLDETVKLWRPDDMQLERTNTGHCLGVVSVAAHPSGI--IAASASLDSFVR   85 (315)
Q Consensus         8 ~~~~~h~~~v~~v~~~~~~~~~~~~l~sgs~d~~v~~w~~~~~~~~~~~~~h~~~v~~~~~~~~g~--~l~s~~~d~~i~   85 (315)
                      ..+..|+.+|.+++|+.++.    .+++|+.|+.+++||+..++. .....|..+|..+.|-+...  .|++|++|++||
T Consensus        66 ka~~~~~~PvL~v~Wsddgs----kVf~g~~Dk~~k~wDL~S~Q~-~~v~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlK  140 (347)
T KOG0647|consen   66 KAQQSHDGPVLDVCWSDDGS----KVFSGGCDKQAKLWDLASGQV-SQVAAHDAPVKTCHWVPGMNYQCLVTGSWDKTLK  140 (347)
T ss_pred             hhhhccCCCeEEEEEccCCc----eEEeeccCCceEEEEccCCCe-eeeeecccceeEEEEecCCCcceeEeccccccee
Confidence            45678999999999999885    599999999999999998865 45567999999999987665  899999999999


Q ss_pred             EEECCCCceeEEeeCCcccEEEEEECCCCCeEEEEecCCCeEEEEecCCcceeeeecCCCCCCCCCCccCCCCcceEEEE
Q 021247           86 VFDVDTNASIATLEASPSEVWQMQFDPKGTTLAVAGGGSASVKLWDTATWNLIATLSIPRPEGLKPTDKSSSKKFVLSVA  165 (315)
Q Consensus        86 ~w~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~  165 (315)
                      .||.+....+.++.. ++.++++..-.   .+++.+..++.|.+|++++......           ...+..+-.++|++
T Consensus       141 fWD~R~~~pv~t~~L-PeRvYa~Dv~~---pm~vVata~r~i~vynL~n~~te~k-----------~~~SpLk~Q~R~va  205 (347)
T KOG0647|consen  141 FWDTRSSNPVATLQL-PERVYAADVLY---PMAVVATAERHIAVYNLENPPTEFK-----------RIESPLKWQTRCVA  205 (347)
T ss_pred             ecccCCCCeeeeeec-cceeeehhccC---ceeEEEecCCcEEEEEcCCCcchhh-----------hhcCcccceeeEEE
Confidence            999998888877764 56677665532   2667778899999999975322111           11122344589999


Q ss_pred             ECCCCCEEEEecCCCcEEEEEcccc--eeeeeecCCc---------cceEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCe
Q 021247          166 WSPDGRRIACGSMDGTISVFDVTRA--KFLHHLEGHF---------MPVRSLVYSPVDPRVLFSASDDTHVHMYDAEGKS  234 (315)
Q Consensus       166 ~~~~~~~l~~~s~dg~i~i~d~~~~--~~~~~~~~~~---------~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~  234 (315)
                      ..++....+.|+.+|++.+..+..+  +.-..++.|.         ..|++++|+| .-..|++++.||+..+||.+.+.
T Consensus       206 ~f~d~~~~alGsiEGrv~iq~id~~~~~~nFtFkCHR~~~~~~~~VYaVNsi~FhP-~hgtlvTaGsDGtf~FWDkdar~  284 (347)
T KOG0647|consen  206 CFQDKDGFALGSIEGRVAIQYIDDPNPKDNFTFKCHRSTNSVNDDVYAVNSIAFHP-VHGTLVTAGSDGTFSFWDKDART  284 (347)
T ss_pred             EEecCCceEeeeecceEEEEecCCCCccCceeEEEeccCCCCCCceEEecceEeec-ccceEEEecCCceEEEecchhhh
Confidence            9999888899999999999887654  2223334443         3678999999 45589999999999999999888


Q ss_pred             eEEEeecccccEEEEEEcCCCCeEEEE
Q 021247          235 LVTAMSGHASWVLSVDASPDGAAITTG  261 (315)
Q Consensus       235 ~~~~~~~~~~~i~~~~~~~~~~~l~s~  261 (315)
                      .++....|..+|++..|+.+|.+++-+
T Consensus       285 kLk~s~~~~qpItcc~fn~~G~ifaYA  311 (347)
T KOG0647|consen  285 KLKTSETHPQPITCCSFNRNGSIFAYA  311 (347)
T ss_pred             hhhccCcCCCccceeEecCCCCEEEEE
Confidence            888888999999999999999987654

>KOG2096 consensus WD40 repeat protein [General function prediction only]

Probab=99.94  E-value=2.3e-24  Score=167.20  Aligned_cols=267  Identities=17%  Similarity=0.239  Sum_probs=186.0

Q ss_pred             EEEcCCCCcce-----eeccccccceEEEEeCCCCCEEEEeeCCCeEEEEECCCCceeE--Ee--eCCcccEEEEEECCC
Q 021247           43 KLWRPDDMQLE-----RTNTGHCLGVVSVAAHPSGIIAASASLDSFVRVFDVDTNASIA--TL--EASPSEVWQMQFDPK  113 (315)
Q Consensus        43 ~~w~~~~~~~~-----~~~~~h~~~v~~~~~~~~g~~l~s~~~d~~i~~w~~~~~~~~~--~~--~~~~~~v~~~~~~~~  113 (315)
                      +-|+.......     ..+++|...|++++|+.+|++|++++.|++||+|++++-....  .+  ....+....+.|.|+
T Consensus        64 ~~~k~~q~~f~Hpl~~~~LKgH~~~vt~~~FsSdGK~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~nve~dhpT~V~FapD  143 (420)
T KOG2096|consen   64 DQWKAKQPTFVHPLNVSVLKGHKKEVTDVAFSSDGKKLATISGDRSIRLWDVRDFENKEHRCIRQNVEYDHPTRVVFAPD  143 (420)
T ss_pred             hhhcccCCCcccchhhhhhhccCCceeeeEEcCCCceeEEEeCCceEEEEecchhhhhhhhHhhccccCCCceEEEECCC
Confidence            44655444332     3468999999999999999999999999999999998643211  11  111235678899999


Q ss_pred             CCeEEEEecCCCeEEEEecCCcceeeeecCCCCCCCCCCccCCCCcceEEEEECCCCCEEEEecCCCcEEEEEcccceee
Q 021247          114 GTTLAVAGGGSASVKLWDTATWNLIATLSIPRPEGLKPTDKSSSKKFVLSVAWSPDGRRIACGSMDGTISVFDVTRAKFL  193 (315)
Q Consensus       114 ~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~s~dg~i~i~d~~~~~~~  193 (315)
                      -+.++++.....++++|-+...+. ..+..+.-..-.......|+-.+..+-....+.+|++++.|..|.+|++. |+.+
T Consensus       144 c~s~vv~~~~g~~l~vyk~~K~~d-G~~~~~~v~~D~~~f~~kh~v~~i~iGiA~~~k~imsas~dt~i~lw~lk-Gq~L  221 (420)
T KOG2096|consen  144 CKSVVVSVKRGNKLCVYKLVKKTD-GSGSHHFVHIDNLEFERKHQVDIINIGIAGNAKYIMSASLDTKICLWDLK-GQLL  221 (420)
T ss_pred             cceEEEEEccCCEEEEEEeeeccc-CCCCcccccccccccchhcccceEEEeecCCceEEEEecCCCcEEEEecC-Ccee
Confidence            988888887778999997643211 11111000000000011233446667777788999999999999999998 8888


Q ss_pred             eeecCCccceEEEEEcCCCCcEEEEEeCCCeEEEEeC---CCCe-----eEEEeecccccEEEEEEcCCCCeEEEEeCCC
Q 021247          194 HHLEGHFMPVRSLVYSPVDPRVLFSASDDTHVHMYDA---EGKS-----LVTAMSGHASWVLSVDASPDGAAITTGSSDR  265 (315)
Q Consensus       194 ~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~---~~~~-----~~~~~~~~~~~i~~~~~~~~~~~l~s~~~d~  265 (315)
                      ..+......-...+.+| +++++++++----+++|+.   +.++     .+-.+.+|...|..++|+|+.+.++|.+.||
T Consensus       222 ~~idtnq~~n~~aavSP-~GRFia~~gFTpDVkVwE~~f~kdG~fqev~rvf~LkGH~saV~~~aFsn~S~r~vtvSkDG  300 (420)
T KOG2096|consen  222 QSIDTNQSSNYDAAVSP-DGRFIAVSGFTPDVKVWEPIFTKDGTFQEVKRVFSLKGHQSAVLAAAFSNSSTRAVTVSKDG  300 (420)
T ss_pred             eeeccccccccceeeCC-CCcEEEEecCCCCceEEEEEeccCcchhhhhhhheeccchhheeeeeeCCCcceeEEEecCC
Confidence            88776666666778898 7889999998888999985   2332     3346789999999999999999999999999


Q ss_pred             cEEEEecCccce-------ehccc--cc--ccceEEEEEeeCCCEEEEEeCCCcEEEee
Q 021247          266 TVKLWDLNMRAA-------MQSMT--NH--TDQVWGVSFRPLGGRVVSVSDDKSISLYE  313 (315)
Q Consensus       266 ~i~iwd~~~~~~-------~~~~~--~~--~~~v~~~~~s~~~~~l~s~~~d~~i~i~~  313 (315)
                      ++++||.+-+-.       +++..  .|  ....-.++++|.|..|+ .+...++++|.
T Consensus       301 ~wriwdtdVrY~~~qDpk~Lk~g~~pl~aag~~p~RL~lsP~g~~lA-~s~gs~l~~~~  358 (420)
T KOG2096|consen  301 KWRIWDTDVRYEAGQDPKILKEGSAPLHAAGSEPVRLELSPSGDSLA-VSFGSDLKVFA  358 (420)
T ss_pred             cEEEeeccceEecCCCchHhhcCCcchhhcCCCceEEEeCCCCcEEE-eecCCceEEEE
Confidence            999999864321       22221  11  22333799999987554 44445566653

>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.94  E-value=4.2e-26  Score=202.78  Aligned_cols=251  Identities=22%  Similarity=0.387  Sum_probs=206.4

Q ss_pred             cceEEEEEeecCCCCCcEEEEeeCCCcEEEEcCCCC------cceeeccccccceEEEEeCCCC-CEEEEeeCCCeEEEE
Q 021247           15 ESVWAVTWVPATETRPALLLTGSLDETVKLWRPDDM------QLERTNTGHCLGVVSVAAHPSG-IIAASASLDSFVRVF   87 (315)
Q Consensus        15 ~~v~~v~~~~~~~~~~~~l~sgs~d~~v~~w~~~~~------~~~~~~~~h~~~v~~~~~~~~g-~~l~s~~~d~~i~~w   87 (315)
                      ...+.++|.+.+.....+|+.|..||.|.+|++...      .+......|+++|..+.|++.. +++++|+.||.|.||
T Consensus        65 ~rF~kL~W~~~g~~~~GlIaGG~edG~I~ly~p~~~~~~~~~~~la~~~~h~G~V~gLDfN~~q~nlLASGa~~geI~iW  144 (1049)
T KOG0307|consen   65 NRFNKLAWGSYGSHSHGLIAGGLEDGNIVLYDPASIIANASEEVLATKSKHTGPVLGLDFNPFQGNLLASGADDGEILIW  144 (1049)
T ss_pred             ccceeeeecccCCCccceeeccccCCceEEecchhhccCcchHHHhhhcccCCceeeeeccccCCceeeccCCCCcEEEe
Confidence            467899999988777788999999999999997642      2344567899999999999965 599999999999999


Q ss_pred             ECCCCceeEEe--eCCcccEEEEEECCCCCeEEEEecCCCeEEEEecCCcceeeeecCCCCCCCCCCccCCCCcceEEEE
Q 021247           88 DVDTNASIATL--EASPSEVWQMQFDPKGTTLAVAGGGSASVKLWDTATWNLIATLSIPRPEGLKPTDKSSSKKFVLSVA  165 (315)
Q Consensus        88 ~~~~~~~~~~~--~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~  165 (315)
                      |++..+...+.  ....+.|.+++|+-+-..++++++.++.+.|||+|..+.+-.+...           .....+..+.
T Consensus       145 Dlnn~~tP~~~~~~~~~~eI~~lsWNrkvqhILAS~s~sg~~~iWDlr~~~pii~ls~~-----------~~~~~~S~l~  213 (1049)
T KOG0307|consen  145 DLNKPETPFTPGSQAPPSEIKCLSWNRKVSHILASGSPSGRAVIWDLRKKKPIIKLSDT-----------PGRMHCSVLA  213 (1049)
T ss_pred             ccCCcCCCCCCCCCCCcccceEeccchhhhHHhhccCCCCCceeccccCCCcccccccC-----------CCccceeeee
Confidence            99986544333  2245789999999888889999999999999999986655443221           1224478999


Q ss_pred             ECCCC-CEEEEecCCC---cEEEEEcccc-eeeeeecCCccceEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCeeEEEee
Q 021247          166 WSPDG-RRIACGSMDG---TISVFDVTRA-KFLHHLEGHFMPVRSLVYSPVDPRVLFSASDDTHVHMYDAEGKSLVTAMS  240 (315)
Q Consensus       166 ~~~~~-~~l~~~s~dg---~i~i~d~~~~-~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~  240 (315)
                      |+|++ ..+++++.|.   .|.+||+|.. ..++.+++|...|.++.|++.++++|++++.|+.|.+|+.++++.+..+.
T Consensus       214 WhP~~aTql~~As~dd~~PviqlWDlR~assP~k~~~~H~~GilslsWc~~D~~lllSsgkD~~ii~wN~~tgEvl~~~p  293 (1049)
T KOG0307|consen  214 WHPDHATQLLVASGDDSAPVIQLWDLRFASSPLKILEGHQRGILSLSWCPQDPRLLLSSGKDNRIICWNPNTGEVLGELP  293 (1049)
T ss_pred             eCCCCceeeeeecCCCCCceeEeecccccCCchhhhcccccceeeeccCCCCchhhhcccCCCCeeEecCCCceEeeecC
Confidence            99975 3566665543   4999999754 45677789999999999999999999999999999999999999999998


Q ss_pred             cccccEEEEEEcCCCC-eEEEEeCCCcEEEEecCccc
Q 021247          241 GHASWVLSVDASPDGA-AITTGSSDRTVKLWDLNMRA  276 (315)
Q Consensus       241 ~~~~~i~~~~~~~~~~-~l~s~~~d~~i~iwd~~~~~  276 (315)
                      ....|+..+.|.|... .++.++-||.|.|+.+....
T Consensus       294 ~~~nW~fdv~w~pr~P~~~A~asfdgkI~I~sl~~~~  330 (1049)
T KOG0307|consen  294 AQGNWCFDVQWCPRNPSVMAAASFDGKISIYSLQGTD  330 (1049)
T ss_pred             CCCcceeeeeecCCCcchhhhheeccceeeeeeecCC
Confidence            8899999999999655 88999999999999987543

>KOG0269 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.94  E-value=2.9e-26  Score=195.99  Aligned_cols=234  Identities=20%  Similarity=0.310  Sum_probs=188.4

Q ss_pred             eEEEEeC-CCCCEEEEeeCCCeEEEEECCC---CceeEEeeCCcccEEEEEECCCCCeEEEEecCCCeEEEEecCCccee
Q 021247           63 VVSVAAH-PSGIIAASASLDSFVRVFDVDT---NASIATLEASPSEVWQMQFDPKGTTLAVAGGGSASVKLWDTATWNLI  138 (315)
Q Consensus        63 v~~~~~~-~~g~~l~s~~~d~~i~~w~~~~---~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~  138 (315)
                      +..+.|+ -+.++|++++..|.|-+||+..   ++.+..+..|...+.++.|++...+++++|+.||+|++||++..+..
T Consensus        90 ~~DVkW~~~~~NlIAT~s~nG~i~vWdlnk~~rnk~l~~f~EH~Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR~~~S~  169 (839)
T KOG0269|consen   90 AADVKWGQLYSNLIATCSTNGVISVWDLNKSIRNKLLTVFNEHERSANKLDFHSTEPNILISGSQDGTVKCWDLRSKKSK  169 (839)
T ss_pred             hhhcccccchhhhheeecCCCcEEEEecCccccchhhhHhhhhccceeeeeeccCCccEEEecCCCceEEEEeeeccccc
Confidence            3445555 2467999999999999999987   45556778899999999999999999999999999999999976655


Q ss_pred             eeecCCCCCCCCCCccCCCCcceEEEEECC-CCCEEEEecCCCcEEEEEcccce-eeeeecCCccceEEEEEcCCCCcEE
Q 021247          139 ATLSIPRPEGLKPTDKSSSKKFVLSVAWSP-DGRRIACGSMDGTISVFDVTRAK-FLHHLEGHFMPVRSLVYSPVDPRVL  216 (315)
Q Consensus       139 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~s~dg~i~i~d~~~~~-~~~~~~~~~~~v~~~~~~~~~~~~l  216 (315)
                      .++..             ....|+.+.|+| .++.|+++...|.+.+||++..+ +...+..|.++|.++.|+| +..+|
T Consensus       170 ~t~~~-------------nSESiRDV~fsp~~~~~F~s~~dsG~lqlWDlRqp~r~~~k~~AH~GpV~c~nwhP-nr~~l  235 (839)
T KOG0269|consen  170 STFRS-------------NSESIRDVKFSPGYGNKFASIHDSGYLQLWDLRQPDRCEKKLTAHNGPVLCLNWHP-NREWL  235 (839)
T ss_pred             ccccc-------------cchhhhceeeccCCCceEEEecCCceEEEeeccCchhHHHHhhcccCceEEEeecC-CCcee
Confidence            44422             234589999999 57899999999999999998654 4567789999999999999 88899


Q ss_pred             EEEeCCCeEEEEeCCCCeeEEEeec-ccccEEEEEEcCCCC-eEEEEeC--CCcEEEEecCcc-ceehcccccccceEEE
Q 021247          217 FSASDDTHVHMYDAEGKSLVTAMSG-HASWVLSVDASPDGA-AITTGSS--DRTVKLWDLNMR-AAMQSMTNHTDQVWGV  291 (315)
Q Consensus       217 ~s~~~d~~i~~wd~~~~~~~~~~~~-~~~~i~~~~~~~~~~-~l~s~~~--d~~i~iwd~~~~-~~~~~~~~~~~~v~~~  291 (315)
                      ++||.|++|+|||+.+........- ...++.++.|-|..+ .|++++.  |-.|+|||++.. -+..++..|.+.++.+
T Consensus       236 ATGGRDK~vkiWd~t~~~~~~~~tInTiapv~rVkWRP~~~~hLAtcsmv~dtsV~VWDvrRPYIP~~t~~eH~~~vt~i  315 (839)
T KOG0269|consen  236 ATGGRDKMVKIWDMTDSRAKPKHTINTIAPVGRVKWRPARSYHLATCSMVVDTSVHVWDVRRPYIPYATFLEHTDSVTGI  315 (839)
T ss_pred             eecCCCccEEEEeccCCCccceeEEeecceeeeeeeccCccchhhhhhccccceEEEEeeccccccceeeeccCccccce
Confidence            9999999999999986543332222 346788999999765 4666654  778999999754 3567888999999999


Q ss_pred             EEee-CCCEEEEEeCCCcEE
Q 021247          292 SFRP-LGGRVVSVSDDKSIS  310 (315)
Q Consensus       292 ~~s~-~~~~l~s~~~d~~i~  310 (315)
                      +|-. +-..+.+++-|++|.
T Consensus       316 ~W~~~d~~~l~s~sKD~tv~  335 (839)
T KOG0269|consen  316 AWDSGDRINLWSCSKDGTVL  335 (839)
T ss_pred             eccCCCceeeEeecCccHHH
Confidence            9975 344678999999864

>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.94  E-value=2e-26  Score=204.82  Aligned_cols=283  Identities=19%  Similarity=0.303  Sum_probs=218.0

Q ss_pred             EEEEEeecCCCCCcEEEEe----------eCCCcEEEEcCCCCcce---eeccc--cccceEEEEeCCCCCE----EEEe
Q 021247           18 WAVTWVPATETRPALLLTG----------SLDETVKLWRPDDMQLE---RTNTG--HCLGVVSVAAHPSGII----AASA   78 (315)
Q Consensus        18 ~~v~~~~~~~~~~~~l~sg----------s~d~~v~~w~~~~~~~~---~~~~~--h~~~v~~~~~~~~g~~----l~s~   78 (315)
                      -.++|+|++.   .++++|          |.+.++.||.++.....   +....  -....+.|.|.+.|..    |+.|
T Consensus        10 a~~awSp~~~---~~laagt~aq~~D~sfst~~slEifeld~~~~~~dlk~~~s~~s~~rF~kL~W~~~g~~~~GlIaGG   86 (1049)
T KOG0307|consen   10 ATFAWSPASP---PLLAAGTAAQQFDASFSTSASLEIFELDFSDESSDLKPVGSLQSSNRFNKLAWGSYGSHSHGLIAGG   86 (1049)
T ss_pred             ceEEecCCCc---hhhHHHhhhhccccccccccccceeeecccCccccccccccccccccceeeeecccCCCccceeecc
Confidence            3578999873   244444          34566777765432211   11111  1235678899887754    8899


Q ss_pred             eCCCeEEEEECCCC------ceeEEeeCCcccEEEEEECCCCCeEEEEecCCCeEEEEecCCcceeeeecCCCCCCCCCC
Q 021247           79 SLDSFVRVFDVDTN------ASIATLEASPSEVWQMQFDPKGTTLAVAGGGSASVKLWDTATWNLIATLSIPRPEGLKPT  152 (315)
Q Consensus        79 ~~d~~i~~w~~~~~------~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~  152 (315)
                      ..||.|-+||....      ..+.+...|.++|..+.|++....++++|+++|.|.|||+...+.-.+..          
T Consensus        87 ~edG~I~ly~p~~~~~~~~~~~la~~~~h~G~V~gLDfN~~q~nlLASGa~~geI~iWDlnn~~tP~~~~----------  156 (1049)
T KOG0307|consen   87 LEDGNIVLYDPASIIANASEEVLATKSKHTGPVLGLDFNPFQGNLLASGADDGEILIWDLNKPETPFTPG----------  156 (1049)
T ss_pred             ccCCceEEecchhhccCcchHHHhhhcccCCceeeeeccccCCceeeccCCCCcEEEeccCCcCCCCCCC----------
Confidence            99999999998762      23456678999999999999998899999999999999997532221110          


Q ss_pred             ccCCCCcceEEEEECCC-CCEEEEecCCCcEEEEEcccceeeeeecCCcc--ceEEEEEcCCCCcEEEEEeCCC---eEE
Q 021247          153 DKSSSKKFVLSVAWSPD-GRRIACGSMDGTISVFDVTRAKFLHHLEGHFM--PVRSLVYSPVDPRVLFSASDDT---HVH  226 (315)
Q Consensus       153 ~~~~~~~~i~~~~~~~~-~~~l~~~s~dg~i~i~d~~~~~~~~~~~~~~~--~v~~~~~~~~~~~~l~s~~~d~---~i~  226 (315)
                       .......|.+++|+.. .+.|++++.+|.+.|||++..+.+-.+..+..  .+..+.|+|++...++++++|.   .|.
T Consensus       157 -~~~~~~eI~~lsWNrkvqhILAS~s~sg~~~iWDlr~~~pii~ls~~~~~~~~S~l~WhP~~aTql~~As~dd~~Pviq  235 (1049)
T KOG0307|consen  157 -SQAPPSEIKCLSWNRKVSHILASGSPSGRAVIWDLRKKKPIIKLSDTPGRMHCSVLAWHPDHATQLLVASGDDSAPVIQ  235 (1049)
T ss_pred             -CCCCcccceEeccchhhhHHhhccCCCCCceeccccCCCcccccccCCCccceeeeeeCCCCceeeeeecCCCCCceeE
Confidence             1112345899999975 56788999999999999998887777765543  4678999998888888777654   589


Q ss_pred             EEeCCCC-eeEEEeecccccEEEEEEcCCC-CeEEEEeCCCcEEEEecCccceehcccccccceEEEEEeeCCC-EEEEE
Q 021247          227 MYDAEGK-SLVTAMSGHASWVLSVDASPDG-AAITTGSSDRTVKLWDLNMRAAMQSMTNHTDQVWGVSFRPLGG-RVVSV  303 (315)
Q Consensus       227 ~wd~~~~-~~~~~~~~~~~~i~~~~~~~~~-~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~-~l~s~  303 (315)
                      +||++.- ..++.+.+|...|.+++|.+.+ ++|+|++.|++|.+|+.++++.+..+....+.+..+.|.|... .+++.
T Consensus       236 lWDlR~assP~k~~~~H~~GilslsWc~~D~~lllSsgkD~~ii~wN~~tgEvl~~~p~~~nW~fdv~w~pr~P~~~A~a  315 (1049)
T KOG0307|consen  236 LWDLRFASSPLKILEGHQRGILSLSWCPQDPRLLLSSGKDNRIICWNPNTGEVLGELPAQGNWCFDVQWCPRNPSVMAAA  315 (1049)
T ss_pred             eecccccCCchhhhcccccceeeeccCCCCchhhhcccCCCCeeEecCCCceEeeecCCCCcceeeeeecCCCcchhhhh
Confidence            9998854 4566778999999999999965 8999999999999999999999999988888999999999876 67889


Q ss_pred             eCCCcEEEeec
Q 021247          304 SDDKSISLYEY  314 (315)
Q Consensus       304 ~~d~~i~i~~~  314 (315)
                      +-||.|.||.+
T Consensus       316 sfdgkI~I~sl  326 (1049)
T KOG0307|consen  316 SFDGKISIYSL  326 (1049)
T ss_pred             eeccceeeeee
Confidence            99999999975

>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]

Probab=99.94  E-value=2.2e-25  Score=168.47  Aligned_cols=294  Identities=17%  Similarity=0.186  Sum_probs=200.6

Q ss_pred             hhhccccceEEEEEeecCCCCCcEEEEeeCCCcEEEEcCCCCcceeecc-ccccceEEEEeCCCCCEEEEeeCCCeEEEE
Q 021247            9 VENAHEESVWAVTWVPATETRPALLLTGSLDETVKLWRPDDMQLERTNT-GHCLGVVSVAAHPSGIIAASASLDSFVRVF   87 (315)
Q Consensus         9 ~~~~h~~~v~~v~~~~~~~~~~~~l~sgs~d~~v~~w~~~~~~~~~~~~-~h~~~v~~~~~~~~g~~l~s~~~d~~i~~w   87 (315)
                      ++++|...|+++.|.-.+     .|.+|..-|.|++|.+.+....-.+. .+...|+.+..-|+ ..+.+-+.|..+-+|
T Consensus         9 vLRp~~~~v~s~~fqa~~-----rL~sg~~~G~V~~w~lqt~r~~~~~r~~g~~~it~lq~~p~-d~l~tqgRd~~L~lw   82 (323)
T KOG0322|consen    9 VLRPHSSSVTSVLFQANE-----RLMSGLSVGIVKMWVLQTERDLPLIRLFGRLFITNLQSIPN-DSLDTQGRDPLLILW   82 (323)
T ss_pred             Eeccccchheehhhccch-----hhhcccccceEEEEEeecCccchhhhhhccceeeceeecCC-cchhhcCCCceEEEE
Confidence            567999999999996543     59999999999999998776555555 46778999998887 567788999999999


Q ss_pred             ECCCCceeEEeeCCcccEEEEEECCCCCeEEEEecCCC-eEEEEecCCcceeeeecCCCCCC--CCCCccCCCCcceEEE
Q 021247           88 DVDTNASIATLEASPSEVWQMQFDPKGTTLAVAGGGSA-SVKLWDTATWNLIATLSIPRPEG--LKPTDKSSSKKFVLSV  164 (315)
Q Consensus        88 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~-~i~~~d~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~i~~~  164 (315)
                      ++.....+..   |.-.++.+-|.+..   +...+... +.-.|+.+..............+  ..+.........+.+.
T Consensus        83 ~ia~s~~i~i---~Si~~nslgFCrfS---l~~~~k~~eqll~yp~rgsde~h~~D~g~~tqv~i~dd~~~~Klgsvmc~  156 (323)
T KOG0322|consen   83 TIAYSAFISI---HSIVVNSLGFCRFS---LVKKPKNSEQLLEYPSRGSDETHKQDGGDTTQVQIADDSERSKLGSVMCQ  156 (323)
T ss_pred             EccCcceEEE---eeeeccccccccce---eccCCCcchhheecCCcccchhhhhccCccceeEccCchhccccCceeee
Confidence            9987554332   11223344443321   11111111 22233332211111000000000  0000011122335555


Q ss_pred             EECC-CCC--EEEEecCCCcEEEEEcccceee----------eeecCCccceEEEEEcCCCCcEEEEEeCCCeEEEEeCC
Q 021247          165 AWSP-DGR--RIACGSMDGTISVFDVTRAKFL----------HHLEGHFMPVRSLVYSPVDPRVLFSASDDTHVHMYDAE  231 (315)
Q Consensus       165 ~~~~-~~~--~l~~~s~dg~i~i~d~~~~~~~----------~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~  231 (315)
                      .+.. ++.  .+++|.++|.+.+||+.++..+          .....|..+|.++.+.+. ...=++|+.+.++..|.++
T Consensus       157 ~~~~~c~s~~lllaGyEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvlsldyas~-~~rGisgga~dkl~~~Sl~  235 (323)
T KOG0322|consen  157 DKDHACGSTFLLLAGYESGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQPVLSLDYASS-CDRGISGGADDKLVMYSLN  235 (323)
T ss_pred             eccccccceEEEEEeccCCeEEEEEccCCceeeccccccccccchhhccCcceeeeechh-hcCCcCCCccccceeeeec
Confidence            5433 343  4578999999999999887332          233468899999999863 2334677788888898876


Q ss_pred             CC----eeEEEeecccccEEEEEEcCCCCeEEEEeCCCcEEEEecCccceehcccccccceEEEEEeeCCCEEEEEeCCC
Q 021247          232 GK----SLVTAMSGHASWVLSVDASPDGAAITTGSSDRTVKLWDLNMRAAMQSMTNHTDQVWGVSFRPLGGRVVSVSDDK  307 (315)
Q Consensus       232 ~~----~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~  307 (315)
                      ..    +......-.+..+..+.+-||++++||+|.|++||||..++..++..+..|++.|++++|+|+-..+|++|.|+
T Consensus       236 ~s~gslq~~~e~~lknpGv~gvrIRpD~KIlATAGWD~RiRVyswrtl~pLAVLkyHsagvn~vAfspd~~lmAaaskD~  315 (323)
T KOG0322|consen  236 HSTGSLQIRKEITLKNPGVSGVRIRPDGKILATAGWDHRIRVYSWRTLNPLAVLKYHSAGVNAVAFSPDCELMAAASKDA  315 (323)
T ss_pred             cccCcccccceEEecCCCccceEEccCCcEEeecccCCcEEEEEeccCCchhhhhhhhcceeEEEeCCCCchhhhccCCc
Confidence            33    22223333455688899999999999999999999999999999999999999999999999989999999999


Q ss_pred             cEEEeecC
Q 021247          308 SISLYEYS  315 (315)
Q Consensus       308 ~i~i~~~~  315 (315)
                      +|.+|++.
T Consensus       316 rISLWkLY  323 (323)
T KOG0322|consen  316 RISLWKLY  323 (323)
T ss_pred             eEEeeecC
Confidence            99999974

>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]

Probab=99.94  E-value=9.2e-25  Score=182.08  Aligned_cols=255  Identities=20%  Similarity=0.306  Sum_probs=196.9

Q ss_pred             eccccccceEEEEeCCCCCEEEEeeCCCeEEEEECCCCceeEEeeCCcccEEEEEECCCCCeEEEEecCCCeEEEEecCC
Q 021247           55 TNTGHCLGVVSVAAHPSGIIAASASLDSFVRVFDVDTNASIATLEASPSEVWQMQFDPKGTTLAVAGGGSASVKLWDTAT  134 (315)
Q Consensus        55 ~~~~h~~~v~~~~~~~~g~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~~d~~~  134 (315)
                      .+.||++.|.+|+.+|.|.+|++|+.||++|+|.+.++.|+.++.. .+.|.+++|+|.+..-+++......+.+-+..-
T Consensus       395 vyrGHtg~Vr~iSvdp~G~wlasGsdDGtvriWEi~TgRcvr~~~~-d~~I~~vaw~P~~~~~vLAvA~~~~~~ivnp~~  473 (733)
T KOG0650|consen  395 VYRGHTGLVRSISVDPSGEWLASGSDDGTVRIWEIATGRCVRTVQF-DSEIRSVAWNPLSDLCVLAVAVGECVLIVNPIF  473 (733)
T ss_pred             eEeccCCeEEEEEecCCcceeeecCCCCcEEEEEeecceEEEEEee-cceeEEEEecCCCCceeEEEEecCceEEeCccc
Confidence            3579999999999999999999999999999999999999998764 458999999998764433333333455555432


Q ss_pred             cce---------eeeecCCCCCCCC---------------CCccCCCCcceEEEEECCCCCEEEEecC---CCcEEEEEc
Q 021247          135 WNL---------IATLSIPRPEGLK---------------PTDKSSSKKFVLSVAWSPDGRRIACGSM---DGTISVFDV  187 (315)
Q Consensus       135 ~~~---------~~~~~~~~~~~~~---------------~~~~~~~~~~i~~~~~~~~~~~l~~~s~---dg~i~i~d~  187 (315)
                      +..         +............               ......+...|+.+.|+..|.||++...   ...|.|+++
T Consensus       474 G~~~e~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHrkGDYlatV~~~~~~~~VliHQL  553 (733)
T KOG0650|consen  474 GDRLEVGPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHRKGDYLATVMPDSGNKSVLIHQL  553 (733)
T ss_pred             cchhhhcchhhhhhcCCCccCCcccceeechhhhhhhccceEEEEecCCccceeeeecCCceEEEeccCCCcceEEEEec
Confidence            211         1111000000000               0011234455889999999999988654   346999999


Q ss_pred             ccceeeeeecCCccceEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCeeEEEeecccccEEEEEEcCCCCeEEEEeCCCcE
Q 021247          188 TRAKFLHHLEGHFMPVRSLVYSPVDPRVLFSASDDTHVHMYDAEGKSLVTAMSGHASWVLSVDASPDGAAITTGSSDRTV  267 (315)
Q Consensus       188 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~d~~i  267 (315)
                      ...+...-++...+.|..+.|+|..+.++++ + -..|++||+..+.+++.+.....+|..++++|.|..|+.|+.|+.+
T Consensus       554 SK~~sQ~PF~kskG~vq~v~FHPs~p~lfVa-T-q~~vRiYdL~kqelvKkL~tg~kwiS~msihp~GDnli~gs~d~k~  631 (733)
T KOG0650|consen  554 SKRKSQSPFRKSKGLVQRVKFHPSKPYLFVA-T-QRSVRIYDLSKQELVKKLLTGSKWISSMSIHPNGDNLILGSYDKKM  631 (733)
T ss_pred             ccccccCchhhcCCceeEEEecCCCceEEEE-e-ccceEEEehhHHHHHHHHhcCCeeeeeeeecCCCCeEEEecCCCee
Confidence            8777666666667789999999976655444 3 3479999998888888877788899999999999999999999999


Q ss_pred             EEEecCcc-ceehcccccccceEEEEEeeCCCEEEEEeCCCcEEEe
Q 021247          268 KLWDLNMR-AAMQSMTNHTDQVWGVSFRPLGGRVVSVSDDKSISLY  312 (315)
Q Consensus       268 ~iwd~~~~-~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~i~i~  312 (315)
                      ..||+... ++.+++..|...+++|+|++.-..++++++||++.||
T Consensus       632 ~WfDldlsskPyk~lr~H~~avr~Va~H~ryPLfas~sdDgtv~Vf  677 (733)
T KOG0650|consen  632 CWFDLDLSSKPYKTLRLHEKAVRSVAFHKRYPLFASGSDDGTVIVF  677 (733)
T ss_pred             EEEEcccCcchhHHhhhhhhhhhhhhhccccceeeeecCCCcEEEE
Confidence            99999864 6788899999999999999999999999999999987

>KOG0302 consensus Ribosome Assembly protein [General function prediction only]

Probab=99.93  E-value=3e-24  Score=169.81  Aligned_cols=246  Identities=22%  Similarity=0.353  Sum_probs=184.9

Q ss_pred             ccccccceEEEEeCCCC--CEEEEeeCCCeEEEEECCC----------------CceeEEeeCCcccEEEEEECCCCCeE
Q 021247           56 NTGHCLGVVSVAAHPSG--IIAASASLDSFVRVFDVDT----------------NASIATLEASPSEVWQMQFDPKGTTL  117 (315)
Q Consensus        56 ~~~h~~~v~~~~~~~~g--~~l~s~~~d~~i~~w~~~~----------------~~~~~~~~~~~~~v~~~~~~~~~~~~  117 (315)
                      ..+|.+.++.+...+.|  .+.++=+..|.|+||++..                .+++.++..|...-+.++|+|-..-.
T Consensus       147 ~i~h~g~~NRvr~~~~~~~~~~aswse~G~V~Vw~l~~~l~~l~~~~~~~~~s~~~Pl~t~~ghk~EGy~LdWSp~~~g~  226 (440)
T KOG0302|consen  147 SIPHYGGINRVRVSRLGNEVLCASWSENGRVQVWDLAPHLNALSEPGLEVKDSEFRPLFTFNGHKGEGYGLDWSPIKTGR  226 (440)
T ss_pred             ccccccccceeeecccCCcceeeeecccCcEEEEEchhhhhhhcCccccccccccCceEEecccCccceeeecccccccc
Confidence            45678888888888766  4555667789999999853                13456777888889999999954444


Q ss_pred             EEEecCCCeEEEEecCCcceeeeecCCCCCCCCCCccCCCCcceEEEEECCC-CCEEEEecCCCcEEEEEccccee--ee
Q 021247          118 AVAGGGSASVKLWDTATWNLIATLSIPRPEGLKPTDKSSSKKFVLSVAWSPD-GRRIACGSMDGTISVFDVTRAKF--LH  194 (315)
Q Consensus       118 ~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-~~~l~~~s~dg~i~i~d~~~~~~--~~  194 (315)
                      +++|.--+.|++|...++.....    .      .....|...|-.++|+|. ...|++||.||+|+|||++.+..  .-
T Consensus       227 LlsGDc~~~I~lw~~~~g~W~vd----~------~Pf~gH~~SVEDLqWSptE~~vfaScS~DgsIrIWDiRs~~~~~~~  296 (440)
T KOG0302|consen  227 LLSGDCVKGIHLWEPSTGSWKVD----Q------RPFTGHTKSVEDLQWSPTEDGVFASCSCDGSIRIWDIRSGPKKAAV  296 (440)
T ss_pred             cccCccccceEeeeeccCceeec----C------ccccccccchhhhccCCccCceEEeeecCceEEEEEecCCCcccee
Confidence            56776678899998776543311    1      112347777999999995 56889999999999999987732  22


Q ss_pred             eecCCccceEEEEEcCCCCcEEEEEeCCCeEEEEeCCC---CeeEEEeecccccEEEEEEcCC-CCeEEEEeCCCcEEEE
Q 021247          195 HLEGHFMPVRSLVYSPVDPRVLFSASDDTHVHMYDAEG---KSLVTAMSGHASWVLSVDASPD-GAAITTGSSDRTVKLW  270 (315)
Q Consensus       195 ~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~---~~~~~~~~~~~~~i~~~~~~~~-~~~l~s~~~d~~i~iw  270 (315)
                      ..+.|...|+.|.|+...+ +|++|++||+++|||++.   ++.+..+.-|..+|+++.|+|. ...++++|.|..|.+|
T Consensus       297 ~~kAh~sDVNVISWnr~~~-lLasG~DdGt~~iwDLR~~~~~~pVA~fk~Hk~pItsieW~p~e~s~iaasg~D~QitiW  375 (440)
T KOG0302|consen  297 STKAHNSDVNVISWNRREP-LLASGGDDGTLSIWDLRQFKSGQPVATFKYHKAPITSIEWHPHEDSVIAASGEDNQITIW  375 (440)
T ss_pred             EeeccCCceeeEEccCCcc-eeeecCCCceEEEEEhhhccCCCcceeEEeccCCeeEEEeccccCceEEeccCCCcEEEE
Confidence            3378999999999998555 999999999999999874   5678889999999999999996 4578999999999999


Q ss_pred             ecCccce-----------ehc-----ccccc--cceEEEEEeeC-CCEEEEEeCCCcEEEe
Q 021247          271 DLNMRAA-----------MQS-----MTNHT--DQVWGVSFRPL-GGRVVSVSDDKSISLY  312 (315)
Q Consensus       271 d~~~~~~-----------~~~-----~~~~~--~~v~~~~~s~~-~~~l~s~~~d~~i~i~  312 (315)
                      |+....-           ++.     +--|.  ..+..+.|+++ ..+|++.+.||.-.+.
T Consensus       376 DlsvE~D~ee~~~~a~~~L~dlPpQLLFVHqGQke~KevhWH~QiPG~lvsTa~dGfnVfk  436 (440)
T KOG0302|consen  376 DLSVEADEEEIDQEAAEGLQDLPPQLLFVHQGQKEVKEVHWHRQIPGLLVSTAIDGFNVFK  436 (440)
T ss_pred             EeeccCChhhhccccccchhcCCceeEEEecchhHhhhheeccCCCCeEEEecccceeEEE
Confidence            9864221           111     11242  35677899987 3588999999854433

>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]

Probab=99.93  E-value=2e-24  Score=180.11  Aligned_cols=285  Identities=20%  Similarity=0.252  Sum_probs=216.3

Q ss_pred             hhhccccceEEEEEeecCCCCCcEEEEeeCCCcEEEEcCCCCcceeeccccccceEEEEeCCCCCE-EEEeeCCCeEEEE
Q 021247            9 VENAHEESVWAVTWVPATETRPALLLTGSLDETVKLWRPDDMQLERTNTGHCLGVVSVAAHPSGII-AASASLDSFVRVF   87 (315)
Q Consensus         9 ~~~~h~~~v~~v~~~~~~~~~~~~l~sgs~d~~v~~w~~~~~~~~~~~~~h~~~v~~~~~~~~g~~-l~s~~~d~~i~~w   87 (315)
                      +..+|++.|.+++-.|.+.    .|++||.||+|++|...++.+++... -...|.+++|+|.+.. +++++....+.+-
T Consensus       395 vyrGHtg~Vr~iSvdp~G~----wlasGsdDGtvriWEi~TgRcvr~~~-~d~~I~~vaw~P~~~~~vLAvA~~~~~~iv  469 (733)
T KOG0650|consen  395 VYRGHTGLVRSISVDPSGE----WLASGSDDGTVRIWEIATGRCVRTVQ-FDSEIRSVAWNPLSDLCVLAVAVGECVLIV  469 (733)
T ss_pred             eEeccCCeEEEEEecCCcc----eeeecCCCCcEEEEEeecceEEEEEe-ecceeEEEEecCCCCceeEEEEecCceEEe
Confidence            4689999999999999775    79999999999999999998887653 2347999999997752 2223333334444


Q ss_pred             ECCCCc-------------------------------------eeEEeeCCcccEEEEEECCCCCeEEEEecC--CCeEE
Q 021247           88 DVDTNA-------------------------------------SIATLEASPSEVWQMQFDPKGTTLAVAGGG--SASVK  128 (315)
Q Consensus        88 ~~~~~~-------------------------------------~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~--d~~i~  128 (315)
                      +..-+.                                     -+...-.+..+|..+.||-.|.+++.+...  ...|.
T Consensus       470 np~~G~~~e~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHrkGDYlatV~~~~~~~~Vl  549 (733)
T KOG0650|consen  470 NPIFGDRLEVGPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHRKGDYLATVMPDSGNKSVL  549 (733)
T ss_pred             CccccchhhhcchhhhhhcCCCccCCcccceeechhhhhhhccceEEEEecCCccceeeeecCCceEEEeccCCCcceEE
Confidence            432110                                     011223356789999999999998776553  35688


Q ss_pred             EEecCCcceeeeecCCCCCCCCCCccCCCCcceEEEEECCCCCEEEEecCCCcEEEEEcccceeeeeecCCccceEEEEE
Q 021247          129 LWDTATWNLIATLSIPRPEGLKPTDKSSSKKFVLSVAWSPDGRRIACGSMDGTISVFDVTRAKFLHHLEGHFMPVRSLVY  208 (315)
Q Consensus       129 ~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~s~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~  208 (315)
                      |+++...+...-+             ...+..+..+.|+|...+|++++. ..|++||+.....+..+......|..++.
T Consensus       550 iHQLSK~~sQ~PF-------------~kskG~vq~v~FHPs~p~lfVaTq-~~vRiYdL~kqelvKkL~tg~kwiS~msi  615 (733)
T KOG0650|consen  550 IHQLSKRKSQSPF-------------RKSKGLVQRVKFHPSKPYLFVATQ-RSVRIYDLSKQELVKKLLTGSKWISSMSI  615 (733)
T ss_pred             EEecccccccCch-------------hhcCCceeEEEecCCCceEEEEec-cceEEEehhHHHHHHHHhcCCeeeeeeee
Confidence            8887643221111             122345889999999999888876 47999999887777777766778899999


Q ss_pred             cCCCCcEEEEEeCCCeEEEEeCCCC-eeEEEeecccccEEEEEEcCCCCeEEEEeCCCcEEEEecCc---------ccee
Q 021247          209 SPVDPRVLFSASDDTHVHMYDAEGK-SLVTAMSGHASWVLSVDASPDGAAITTGSSDRTVKLWDLNM---------RAAM  278 (315)
Q Consensus       209 ~~~~~~~l~s~~~d~~i~~wd~~~~-~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~d~~i~iwd~~~---------~~~~  278 (315)
                      +| .+.-|+.++.|+.+..||+.-. +..+.+.-|...++++++++.-.++++|+.||++.||.-+-         --++
T Consensus       616 hp-~GDnli~gs~d~k~~WfDldlsskPyk~lr~H~~avr~Va~H~ryPLfas~sdDgtv~Vfhg~VY~Dl~qnpliVPl  694 (733)
T KOG0650|consen  616 HP-NGDNLILGSYDKKMCWFDLDLSSKPYKTLRLHEKAVRSVAFHKRYPLFASGSDDGTVIVFHGMVYNDLLQNPLIVPL  694 (733)
T ss_pred             cC-CCCeEEEecCCCeeEEEEcccCcchhHHhhhhhhhhhhhhhccccceeeeecCCCcEEEEeeeeehhhhcCCceEee
Confidence            98 5667888999999999998743 45667788999999999999999999999999999985431         1245


Q ss_pred             hcccccccc----eEEEEEeeCCCEEEEEeCCCcEEEee
Q 021247          279 QSMTNHTDQ----VWGVSFRPLGGRVVSVSDDKSISLYE  313 (315)
Q Consensus       279 ~~~~~~~~~----v~~~~~s~~~~~l~s~~~d~~i~i~~  313 (315)
                      +.+.+|...    |..+.|+|...+|+++|+||+|++|.
T Consensus       695 K~L~gH~~~~~~gVLd~~wHP~qpWLfsAGAd~tirlfT  733 (733)
T KOG0650|consen  695 KRLRGHEKTNDLGVLDTIWHPRQPWLFSAGADGTIRLFT  733 (733)
T ss_pred             eeccCceeecccceEeecccCCCceEEecCCCceEEeeC
Confidence            667888755    88999999999999999999999983

>KOG0302 consensus Ribosome Assembly protein [General function prediction only]

Probab=99.93  E-value=2.7e-24  Score=170.12  Aligned_cols=248  Identities=16%  Similarity=0.215  Sum_probs=189.2

Q ss_pred             hhhccccceEEEEEeecCCCCCcEEEEeeCCCcEEEEcCCC----------------CcceeeccccccceEEEEeCCCC
Q 021247            9 VENAHEESVWAVTWVPATETRPALLLTGSLDETVKLWRPDD----------------MQLERTNTGHCLGVVSVAAHPSG   72 (315)
Q Consensus         9 ~~~~h~~~v~~v~~~~~~~~~~~~l~sgs~d~~v~~w~~~~----------------~~~~~~~~~h~~~v~~~~~~~~g   72 (315)
                      .+-+|.+.|+.+.-.+.++  ..++++.+..|.|++|+...                ...+..+.+|...-..|+|+|-.
T Consensus       146 ~~i~h~g~~NRvr~~~~~~--~~~~aswse~G~V~Vw~l~~~l~~l~~~~~~~~~s~~~Pl~t~~ghk~EGy~LdWSp~~  223 (440)
T KOG0302|consen  146 KSIPHYGGINRVRVSRLGN--EVLCASWSENGRVQVWDLAPHLNALSEPGLEVKDSEFRPLFTFNGHKGEGYGLDWSPIK  223 (440)
T ss_pred             cccccccccceeeecccCC--cceeeeecccCcEEEEEchhhhhhhcCccccccccccCceEEecccCccceeeeccccc
Confidence            3457889999999888764  35788889999999998532                12234556888888999999943


Q ss_pred             -CEEEEeeCCCeEEEEECCCCcee---EEeeCCcccEEEEEECCCCCeEEEEecCCCeEEEEecCCcceeeeecCCCCCC
Q 021247           73 -IIAASASLDSFVRVFDVDTNASI---ATLEASPSEVWQMQFDPKGTTLAVAGGGSASVKLWDTATWNLIATLSIPRPEG  148 (315)
Q Consensus        73 -~~l~s~~~d~~i~~w~~~~~~~~---~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~  148 (315)
                       -.+++|..-+.|++|...++.-.   ..+..|...|..++|+|....++++|+.|++|+|||+|.+.....+.      
T Consensus       224 ~g~LlsGDc~~~I~lw~~~~g~W~vd~~Pf~gH~~SVEDLqWSptE~~vfaScS~DgsIrIWDiRs~~~~~~~~------  297 (440)
T KOG0302|consen  224 TGRLLSGDCVKGIHLWEPSTGSWKVDQRPFTGHTKSVEDLQWSPTEDGVFASCSCDGSIRIWDIRSGPKKAAVS------  297 (440)
T ss_pred             ccccccCccccceEeeeeccCceeecCccccccccchhhhccCCccCceEEeeecCceEEEEEecCCCccceeE------
Confidence             25788988899999999887532   24556889999999999999999999999999999999864322221      


Q ss_pred             CCCCccCCCCcceEEEEECCCCCEEEEecCCCcEEEEEccc---ceeeeeecCCccceEEEEEcCCCCcEEEEEeCCCeE
Q 021247          149 LKPTDKSSSKKFVLSVAWSPDGRRIACGSMDGTISVFDVTR---AKFLHHLEGHFMPVRSLVYSPVDPRVLFSASDDTHV  225 (315)
Q Consensus       149 ~~~~~~~~~~~~i~~~~~~~~~~~l~~~s~dg~i~i~d~~~---~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i  225 (315)
                           ...|..-|+.+.|+-.-.+||+|+.||.++|||+++   ++++..++-|..+|+++.|+|.+...+++++.|..|
T Consensus       298 -----~kAh~sDVNVISWnr~~~lLasG~DdGt~~iwDLR~~~~~~pVA~fk~Hk~pItsieW~p~e~s~iaasg~D~Qi  372 (440)
T KOG0302|consen  298 -----TKAHNSDVNVISWNRREPLLASGGDDGTLSIWDLRQFKSGQPVATFKYHKAPITSIEWHPHEDSVIAASGEDNQI  372 (440)
T ss_pred             -----eeccCCceeeEEccCCcceeeecCCCceEEEEEhhhccCCCcceeEEeccCCeeEEEeccccCceEEeccCCCcE
Confidence                 123444599999998877999999999999999975   456788899999999999999999999999999999


Q ss_pred             EEEeCCCCe--------e--------EEEeecc--cccEEEEEEcCC-CCeEEEEeCCCcEEEE
Q 021247          226 HMYDAEGKS--------L--------VTAMSGH--ASWVLSVDASPD-GAAITTGSSDRTVKLW  270 (315)
Q Consensus       226 ~~wd~~~~~--------~--------~~~~~~~--~~~i~~~~~~~~-~~~l~s~~~d~~i~iw  270 (315)
                      .+||+.-..        .        .+.+--|  ...+-.+.|+++ ..++++.+.|| +.||
T Consensus       373 tiWDlsvE~D~ee~~~~a~~~L~dlPpQLLFVHqGQke~KevhWH~QiPG~lvsTa~dG-fnVf  435 (440)
T KOG0302|consen  373 TIWDLSVEADEEEIDQEAAEGLQDLPPQLLFVHQGQKEVKEVHWHRQIPGLLVSTAIDG-FNVF  435 (440)
T ss_pred             EEEEeeccCChhhhccccccchhcCCceeEEEecchhHhhhheeccCCCCeEEEecccc-eeEE
Confidence            999974210        0        0111123  234566788875 34777777787 4454

>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]

Probab=99.93  E-value=1.7e-23  Score=160.81  Aligned_cols=258  Identities=20%  Similarity=0.298  Sum_probs=194.6

Q ss_pred             hccccceEEEEEeecCCCCCcEEEEeeCCCcEEEEcCCCCcceeeccccccceEEEEeCCC---CCEEEEeeCCCeEEEE
Q 021247           11 NAHEESVWAVTWVPATETRPALLLTGSLDETVKLWRPDDMQLERTNTGHCLGVVSVAAHPS---GIIAASASLDSFVRVF   87 (315)
Q Consensus        11 ~~h~~~v~~v~~~~~~~~~~~~l~sgs~d~~v~~w~~~~~~~~~~~~~h~~~v~~~~~~~~---g~~l~s~~~d~~i~~w   87 (315)
                      .+|.-.|..+.|-|...   .++.++|.|.++++||..+.+....++- .+.|.+-+.+|-   ..++++|..|-.||+-
T Consensus        98 ~~Hky~iss~~WyP~Dt---GmFtssSFDhtlKVWDtnTlQ~a~~F~m-e~~VYshamSp~a~sHcLiA~gtr~~~VrLC  173 (397)
T KOG4283|consen   98 NGHKYAISSAIWYPIDT---GMFTSSSFDHTLKVWDTNTLQEAVDFKM-EGKVYSHAMSPMAMSHCLIAAGTRDVQVRLC  173 (397)
T ss_pred             ccceeeeeeeEEeeecC---ceeecccccceEEEeecccceeeEEeec-CceeehhhcChhhhcceEEEEecCCCcEEEE
Confidence            56777999999999765   4899999999999999888765444432 234666666663   3588889999999999


Q ss_pred             ECCCCceeEEeeCCcccEEEEEECCCCCeEEEEecCCCeEEEEecCCc-ceeeeecCCCCCCCCC-CccCCCCcceEEEE
Q 021247           88 DVDTNASIATLEASPSEVWQMQFDPKGTTLAVAGGGSASVKLWDTATW-NLIATLSIPRPEGLKP-TDKSSSKKFVLSVA  165 (315)
Q Consensus        88 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~~d~~~~-~~~~~~~~~~~~~~~~-~~~~~~~~~i~~~~  165 (315)
                      |+..+..-.++.+|.+.|.++.|+|...+++++|+.||.|++||++.. -+...+..+...-.+. .....|...+.+++
T Consensus       174 Di~SGs~sH~LsGHr~~vlaV~Wsp~~e~vLatgsaDg~irlWDiRrasgcf~~lD~hn~k~~p~~~~n~ah~gkvngla  253 (397)
T KOG4283|consen  174 DIASGSFSHTLSGHRDGVLAVEWSPSSEWVLATGSADGAIRLWDIRRASGCFRVLDQHNTKRPPILKTNTAHYGKVNGLA  253 (397)
T ss_pred             eccCCcceeeeccccCceEEEEeccCceeEEEecCCCceEEEEEeecccceeEEeecccCccCccccccccccceeeeee
Confidence            999999999999999999999999999999999999999999999875 3344443322111111 12345667799999


Q ss_pred             ECCCCCEEEEecCCCcEEEEEcccceeeeeec---CCccceEEEEEc--CCCCcEEEEEeCCCeEEEEeCCCCeeEEEee
Q 021247          166 WSPDGRRIACGSMDGTISVFDVTRAKFLHHLE---GHFMPVRSLVYS--PVDPRVLFSASDDTHVHMYDAEGKSLVTAMS  240 (315)
Q Consensus       166 ~~~~~~~l~~~s~dg~i~i~d~~~~~~~~~~~---~~~~~v~~~~~~--~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~  240 (315)
                      |..++.++++++.|..+++|+...++....-.   .|+.. ..+++.  ..+...++--=.++.+.++.+-.++.+..+.
T Consensus       254 ~tSd~~~l~~~gtd~r~r~wn~~~G~ntl~~~g~~~~n~~-~~~~~~~~~~~s~vfv~~p~~~~lall~~~sgs~ir~l~  332 (397)
T KOG4283|consen  254 WTSDARYLASCGTDDRIRVWNMESGRNTLREFGPIIHNQT-TSFAVHIQSMDSDVFVLFPNDGSLALLNLLEGSFVRRLS  332 (397)
T ss_pred             ecccchhhhhccCccceEEeecccCccccccccccccccc-ccceEEEeecccceEEEEecCCeEEEEEccCceEEEeee
Confidence            99999999999999999999998765321111   01110 111111  1122233333345789999998999999999


Q ss_pred             cccccEEEEEEcCCCCeEEEEeCCCcEEEEecC
Q 021247          241 GHASWVLSVDASPDGAAITTGSSDRTVKLWDLN  273 (315)
Q Consensus       241 ~~~~~i~~~~~~~~~~~l~s~~~d~~i~iwd~~  273 (315)
                      .|...|.+..+.|+-+...+|..|+.|..|-..
T Consensus       333 ~h~k~i~c~~~~~~fq~~~tg~~d~ni~~w~p~  365 (397)
T KOG4283|consen  333 THLKRINCAAYRPDFEQCFTGDMNGNIYMWSPA  365 (397)
T ss_pred             cccceeeEEeecCchhhhhccccCCcccccccc
Confidence            998889999999998999999999999999764

>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]

Probab=99.93  E-value=1.8e-23  Score=162.51  Aligned_cols=277  Identities=23%  Similarity=0.323  Sum_probs=203.2

Q ss_pred             ceEEEEEeecCCCCCcEEEEeeCCCcEEEEcCCCCcc------------eeecc-ccccceEEEEe-------CCCCCEE
Q 021247           16 SVWAVTWVPATETRPALLLTGSLDETVKLWRPDDMQL------------ERTNT-GHCLGVVSVAA-------HPSGIIA   75 (315)
Q Consensus        16 ~v~~v~~~~~~~~~~~~l~sgs~d~~v~~w~~~~~~~------------~~~~~-~h~~~v~~~~~-------~~~g~~l   75 (315)
                      -..++.|+|++.    .|++-+.|..+.+|++.....            ...+. .....|...++       .|+..++
T Consensus        51 f~kgckWSPDGS----ciL~~sedn~l~~~nlP~dlys~~~~~~~~~~~~~~~r~~eg~tvydy~wYs~M~s~qP~t~l~  126 (406)
T KOG2919|consen   51 FLKGCKWSPDGS----CILSLSEDNCLNCWNLPFDLYSKKADGPLNFSKHLSYRYQEGETVYDYCWYSRMKSDQPSTNLF  126 (406)
T ss_pred             hhccceeCCCCc----eEEeecccCeeeEEecChhhcccCCCCccccccceeEEeccCCEEEEEEeeeccccCCCcccee
Confidence            345778999886    589999999999998531100            00000 11123444444       4778899


Q ss_pred             EEeeCCCeEEEEECCCCceeEEeeC--Ccc---cEEEEEECCCCCeEEEEecCCCeEEEEec-CCcceeeeecCCCCCCC
Q 021247           76 ASASLDSFVRVFDVDTNASIATLEA--SPS---EVWQMQFDPKGTTLAVAGGGSASVKLWDT-ATWNLIATLSIPRPEGL  149 (315)
Q Consensus        76 ~s~~~d~~i~~w~~~~~~~~~~~~~--~~~---~v~~~~~~~~~~~~~~~~~~d~~i~~~d~-~~~~~~~~~~~~~~~~~  149 (315)
                      ++.+.|.-|++||..+++....+..  |.+   .-.+++|+|+|.+++  ++....|+++|+ |.+.....+..      
T Consensus       127 a~ssr~~PIh~wdaftG~lraSy~~ydh~de~taAhsL~Fs~DGeqlf--aGykrcirvFdt~RpGr~c~vy~t------  198 (406)
T KOG2919|consen  127 AVSSRDQPIHLWDAFTGKLRASYRAYDHQDEYTAAHSLQFSPDGEQLF--AGYKRCIRVFDTSRPGRDCPVYTT------  198 (406)
T ss_pred             eeccccCceeeeeccccccccchhhhhhHHhhhhheeEEecCCCCeEe--ecccceEEEeeccCCCCCCcchhh------
Confidence            9999999999999999987766543  222   345899999999875  367899999998 44432211110      


Q ss_pred             CCCccCCCCcceEEEEECCC-CCEEEEecCCCcEEEEEcccceeeeeecCCccceEEEEEcCCCCcEEEEEeC-CCeEEE
Q 021247          150 KPTDKSSSKKFVLSVAWSPD-GRRIACGSMDGTISVFDVTRAKFLHHLEGHFMPVRSLVYSPVDPRVLFSASD-DTHVHM  227 (315)
Q Consensus       150 ~~~~~~~~~~~i~~~~~~~~-~~~l~~~s~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~-d~~i~~  227 (315)
                      ....+.+.+..|.+++|+|- ...+++|+...++-||.-...+++..+.+|.+.|+.+.|.+ +++.|++|.. |-+|..
T Consensus       199 ~~~~k~gq~giisc~a~sP~~~~~~a~gsY~q~~giy~~~~~~pl~llggh~gGvThL~~~e-dGn~lfsGaRk~dkIl~  277 (406)
T KOG2919|consen  199 VTKGKFGQKGIISCFAFSPMDSKTLAVGSYGQRVGIYNDDGRRPLQLLGGHGGGVTHLQWCE-DGNKLFSGARKDDKILC  277 (406)
T ss_pred             hhcccccccceeeeeeccCCCCcceeeecccceeeeEecCCCCceeeecccCCCeeeEEecc-CcCeecccccCCCeEEE
Confidence            00112334567899999994 55899999999999998878888889999999999999999 5567777765 789999


Q ss_pred             EeCCCC-eeEEEeecccc-cE--EEEEEcCCCCeEEEEeCCCcEEEEecCc-cceehcccccccceEEEEEeeCCCEEEE
Q 021247          228 YDAEGK-SLVTAMSGHAS-WV--LSVDASPDGAAITTGSSDRTVKLWDLNM-RAAMQSMTNHTDQVWGVSFRPLGGRVVS  302 (315)
Q Consensus       228 wd~~~~-~~~~~~~~~~~-~i--~~~~~~~~~~~l~s~~~d~~i~iwd~~~-~~~~~~~~~~~~~v~~~~~s~~~~~l~s  302 (315)
                      ||++.. ..+..+..|.+ .-  .-.+..|.+++|++|+.||.|++||++. +.....+..|.+.++.++++|--..+++
T Consensus       278 WDiR~~~~pv~~L~rhv~~TNQRI~FDld~~~~~LasG~tdG~V~vwdlk~~gn~~sv~~~~sd~vNgvslnP~mpilat  357 (406)
T KOG2919|consen  278 WDIRYSRDPVYALERHVGDTNQRILFDLDPKGEILASGDTDGSVRVWDLKDLGNEVSVTGNYSDTVNGVSLNPIMPILAT  357 (406)
T ss_pred             EeehhccchhhhhhhhccCccceEEEecCCCCceeeccCCCccEEEEecCCCCCcccccccccccccceecCcccceeee
Confidence            999853 44555555544 22  2356678999999999999999999987 6667778889999999999998777776


Q ss_pred             EeC
Q 021247          303 VSD  305 (315)
Q Consensus       303 ~~~  305 (315)
                      ++.
T Consensus       358 ssG  360 (406)
T KOG2919|consen  358 SSG  360 (406)
T ss_pred             ccC
Confidence            654

>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]

Probab=99.93  E-value=3.7e-24  Score=174.96  Aligned_cols=267  Identities=20%  Similarity=0.257  Sum_probs=201.0

Q ss_pred             EEEeeCCCcEEEEcCCCCcceeeccccc--cceEEEEeCCCCC-EEEEeeCCCeEEEEECCCCc--eeEEeeCCcccEEE
Q 021247           33 LLTGSLDETVKLWRPDDMQLERTNTGHC--LGVVSVAAHPSGI-IAASASLDSFVRVFDVDTNA--SIATLEASPSEVWQ  107 (315)
Q Consensus        33 l~sgs~d~~v~~w~~~~~~~~~~~~~h~--~~v~~~~~~~~g~-~l~s~~~d~~i~~w~~~~~~--~~~~~~~~~~~v~~  107 (315)
                      |..+|....+++||.........+..|+  .++.++.|+.... .+++.+.|..+++|......  ....-+...+.-.|
T Consensus         5 l~~aS~gd~~kl~D~s~~~~~~~~~~~t~~pg~~s~~w~~~n~lvvas~~gdk~~~~~~K~g~~~~Vp~~~k~~gd~~~C   84 (673)
T KOG4378|consen    5 LHVASTGDKTKLSDFSDLETKSEYVHQTAEPGDFSFNWQRRNFLVVASMAGDKVMRIKEKDGKTPEVPRVRKLTGDNAFC   84 (673)
T ss_pred             eeeeccCCceEEeecccccCccccccCCCCCcceeeeccccceEEEeecCCceeEEEecccCCCCccceeeccccchHHH
Confidence            4445556689999987655433333232  2588999988774 44566789999999865431  11111111122223


Q ss_pred             EEECCCCCeEEEEecCCCeEEEEecCCcceeeeecCCCCCCCCCCccCCCCcceEEEEECCCCCEEEEecCCCcEEEEEc
Q 021247          108 MQFDPKGTTLAVAGGGSASVKLWDTATWNLIATLSIPRPEGLKPTDKSSSKKFVLSVAWSPDGRRIACGSMDGTISVFDV  187 (315)
Q Consensus       108 ~~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~s~dg~i~i~d~  187 (315)
                      ++...... .+++|+..+.|+|||++..-....+             ..|+..|+++.++....+||+++..|.|.+..+
T Consensus        85 v~~~s~S~-y~~sgG~~~~Vkiwdl~~kl~hr~l-------------kdh~stvt~v~YN~~DeyiAsvs~gGdiiih~~  150 (673)
T KOG4378|consen   85 VACASQSL-YEISGGQSGCVKIWDLRAKLIHRFL-------------KDHQSTVTYVDYNNTDEYIASVSDGGDIIIHGT  150 (673)
T ss_pred             Hhhhhcce-eeeccCcCceeeehhhHHHHHhhhc-------------cCCcceeEEEEecCCcceeEEeccCCcEEEEec
Confidence            33333333 4578888999999999843222222             345677999999999999999999999999999


Q ss_pred             ccceeeeeecCC-ccceEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCeeE-EEeecccccEEEEEEcCC-CCeEEEEeCC
Q 021247          188 TRAKFLHHLEGH-FMPVRSLVYSPVDPRVLFSASDDTHVHMYDAEGKSLV-TAMSGHASWVLSVDASPD-GAAITTGSSD  264 (315)
Q Consensus       188 ~~~~~~~~~~~~-~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~-~~~~~~~~~i~~~~~~~~-~~~l~s~~~d  264 (315)
                      .++.....+... ...|+-+.|+|....+|.+++++|.+.+||.++...+ .....|..+...++|+|. ..+|++.|.|
T Consensus       151 ~t~~~tt~f~~~sgqsvRll~ys~skr~lL~~asd~G~VtlwDv~g~sp~~~~~~~HsAP~~gicfspsne~l~vsVG~D  230 (673)
T KOG4378|consen  151 KTKQKTTTFTIDSGQSVRLLRYSPSKRFLLSIASDKGAVTLWDVQGMSPIFHASEAHSAPCRGICFSPSNEALLVSVGYD  230 (673)
T ss_pred             ccCccccceecCCCCeEEEeecccccceeeEeeccCCeEEEEeccCCCcccchhhhccCCcCcceecCCccceEEEeccc
Confidence            888777666654 4567899999988888999999999999999887554 445689999999999995 5678999999


Q ss_pred             CcEEEEecCccceehcccccccceEEEEEeeCCCEEEEEeCCCcEEEeec
Q 021247          265 RTVKLWDLNMRAAMQSMTNHTDQVWGVSFRPLGGRVVSVSDDKSISLYEY  314 (315)
Q Consensus       265 ~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~i~i~~~  314 (315)
                      .+|.+||....+...++.. ..+...|+|+++|.+|++|...|.|..||+
T Consensus       231 kki~~yD~~s~~s~~~l~y-~~Plstvaf~~~G~~L~aG~s~G~~i~YD~  279 (673)
T KOG4378|consen  231 KKINIYDIRSQASTDRLTY-SHPLSTVAFSECGTYLCAGNSKGELIAYDM  279 (673)
T ss_pred             ceEEEeecccccccceeee-cCCcceeeecCCceEEEeecCCceEEEEec
Confidence            9999999998887777754 568999999999999999999999999986

>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]

Probab=99.93  E-value=5.1e-24  Score=165.75  Aligned_cols=259  Identities=21%  Similarity=0.335  Sum_probs=197.6

Q ss_pred             ccccceEEEEEeecCCCCCcEEEEeeCCCcEEEEcCCCCcceeeccccccceEEEEeCCCC-CEEEEeeCCCeEEEEECC
Q 021247           12 AHEESVWAVTWVPATETRPALLLTGSLDETVKLWRPDDMQLERTNTGHCLGVVSVAAHPSG-IIAASASLDSFVRVFDVD   90 (315)
Q Consensus        12 ~h~~~v~~v~~~~~~~~~~~~l~sgs~d~~v~~w~~~~~~~~~~~~~h~~~v~~~~~~~~g-~~l~s~~~d~~i~~w~~~   90 (315)
                      .|++..+.++|+-+.+..+.++|.|+.=|.|++.|+..+++.+.+.+|...|+.+.++|.. +++++++.|.+||+|+++
T Consensus        87 d~~Esfytcsw~yd~~~~~p~la~~G~~GvIrVid~~~~~~~~~~~ghG~sINeik~~p~~~qlvls~SkD~svRlwnI~  166 (385)
T KOG1034|consen   87 DHDESFYTCSWSYDSNTGNPFLAAGGYLGVIRVIDVVSGQCSKNYRGHGGSINEIKFHPDRPQLVLSASKDHSVRLWNIQ  166 (385)
T ss_pred             CCCcceEEEEEEecCCCCCeeEEeecceeEEEEEecchhhhccceeccCccchhhhcCCCCCcEEEEecCCceEEEEecc
Confidence            4899999999999888778899999999999999999999999999999999999999987 788999999999999999


Q ss_pred             CCceeEEe---eCCcccEEEEEECCCCCeEEEEecCCCeEEEEecCCcceeeeec-------------CCCCCCCCCC--
Q 021247           91 TNASIATL---EASPSEVWQMQFDPKGTTLAVAGGGSASVKLWDTATWNLIATLS-------------IPRPEGLKPT--  152 (315)
Q Consensus        91 ~~~~~~~~---~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~-------------~~~~~~~~~~--  152 (315)
                      +..++..+   ++|.+.|.++.|++++.++ ++++.|-++++|++...+....+.             +|.+....|.  
T Consensus       167 ~~~Cv~VfGG~egHrdeVLSvD~~~~gd~i-~ScGmDhslk~W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~~~~fp~fs  245 (385)
T KOG1034|consen  167 TDVCVAVFGGVEGHRDEVLSVDFSLDGDRI-ASCGMDHSLKLWRLNVKEFKNKLELSITYSPNKTTRPFPTPKTHFPDFS  245 (385)
T ss_pred             CCeEEEEecccccccCcEEEEEEcCCCCee-eccCCcceEEEEecChhHHhhhhhhhcccCCCCccCcCCcccccccccc
Confidence            99998876   5688999999999999854 788999999999998433221111             1111111111  


Q ss_pred             ccCCCCcceEEEEECCCCCEEEEecCCCcEEEEEccc-ce-------------eeeeecCCccceEEEEEcCC-CCcEEE
Q 021247          153 DKSSSKKFVLSVAWSPDGRRIACGSMDGTISVFDVTR-AK-------------FLHHLEGHFMPVRSLVYSPV-DPRVLF  217 (315)
Q Consensus       153 ~~~~~~~~i~~~~~~~~~~~l~~~s~dg~i~i~d~~~-~~-------------~~~~~~~~~~~v~~~~~~~~-~~~~l~  217 (315)
                      ...-|..+|-|+.|-  |+++++-+-++.|..|.... ++             .+..+.-....|+-+.|.-+ ..+.|+
T Consensus       246 t~diHrnyVDCvrw~--gd~ilSkscenaI~~w~pgkl~e~~~~vkp~es~~Ti~~~~~~~~c~iWfirf~~d~~~~~la  323 (385)
T KOG1034|consen  246 TTDIHRNYVDCVRWF--GDFILSKSCENAIVCWKPGKLEESIHNVKPPESATTILGEFDYPMCDIWFIRFAFDPWQKMLA  323 (385)
T ss_pred             ccccccchHHHHHHH--hhheeecccCceEEEEecchhhhhhhccCCCccceeeeeEeccCccceEEEEEeecHHHHHHh
Confidence            223456667677765  57899988899999998621 11             11222333445666655421 456899


Q ss_pred             EEeCCCeEEEEeCCCCeeEE--Eee--cccccEEEEEEcCCCCeEEEEeCCCcEEEEecC
Q 021247          218 SASDDTHVHMYDAEGKSLVT--AMS--GHASWVLSVDASPDGAAITTGSSDRTVKLWDLN  273 (315)
Q Consensus       218 s~~~d~~i~~wd~~~~~~~~--~~~--~~~~~i~~~~~~~~~~~l~s~~~d~~i~iwd~~  273 (315)
                      .|...|.+.+||++......  ++.  .....|...+|+.++.+|+..+.|++|.-||.-
T Consensus       324 ~gnq~g~v~vwdL~~~ep~~~ttl~~s~~~~tVRQ~sfS~dgs~lv~vcdd~~Vwrwdrv  383 (385)
T KOG1034|consen  324 LGNQSGKVYVWDLDNNEPPKCTTLTHSKSGSTVRQTSFSRDGSILVLVCDDGTVWRWDRV  383 (385)
T ss_pred             hccCCCcEEEEECCCCCCccCceEEeccccceeeeeeecccCcEEEEEeCCCcEEEEEee
Confidence            99999999999998654421  121  224568899999999999999999999988853

>KOG4328 consensus WD40 protein [Function unknown]

Probab=99.93  E-value=8.9e-24  Score=170.96  Aligned_cols=247  Identities=19%  Similarity=0.251  Sum_probs=192.8

Q ss_pred             ccccccceEEEEeCCCC--CEEEEeeCCCeEEEEECCCCc----eeEEeeCCcccEEEEEECCCCCeEEEEecCCCeEEE
Q 021247           56 NTGHCLGVVSVAAHPSG--IIAASASLDSFVRVFDVDTNA----SIATLEASPSEVWQMQFDPKGTTLAVAGGGSASVKL  129 (315)
Q Consensus        56 ~~~h~~~v~~~~~~~~g--~~l~s~~~d~~i~~w~~~~~~----~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~  129 (315)
                      ..-+...|++++|+|..  +++++|+.-|+|-+||+.+.+    .+..+..|..+|.++.|+|.+..-+++.+.||+|++
T Consensus       182 ~kv~~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d~d~v~~f~~hs~~Vs~l~F~P~n~s~i~ssSyDGtiR~  261 (498)
T KOG4328|consen  182 AKVTDRRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEKDKDGVYLFTPHSGPVSGLKFSPANTSQIYSSSYDGTIRL  261 (498)
T ss_pred             eEecccceEEEEecccCcceEEEEccCCCcEEEEecCCCCCccCceEEeccCCccccceEecCCChhheeeeccCceeee
Confidence            34577889999999976  488899999999999995322    344566788899999999988777788899999999


Q ss_pred             EecCCcceeeeecCCCCCCCCCCccCCCCcceEEEEECCCCCEEEEecCCCcEEEEEccccee-eeeecCCccceEEEEE
Q 021247          130 WDTATWNLIATLSIPRPEGLKPTDKSSSKKFVLSVAWSPDGRRIACGSMDGTISVFDVTRAKF-LHHLEGHFMPVRSLVY  208 (315)
Q Consensus       130 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~s~dg~i~i~d~~~~~~-~~~~~~~~~~v~~~~~  208 (315)
                      -|+.+......+...           ....++..+.|+.+...++.+..=|.+.+||+++... ...+..|...|+.+++
T Consensus       262 ~D~~~~i~e~v~s~~-----------~d~~~fs~~d~~~e~~~vl~~~~~G~f~~iD~R~~~s~~~~~~lh~kKI~sv~~  330 (498)
T KOG4328|consen  262 QDFEGNISEEVLSLD-----------TDNIWFSSLDFSAESRSVLFGDNVGNFNVIDLRTDGSEYENLRLHKKKITSVAL  330 (498)
T ss_pred             eeecchhhHHHhhcC-----------ccceeeeeccccCCCccEEEeecccceEEEEeecCCccchhhhhhhcccceeec
Confidence            999764332222211           1234577888988887777777667999999987654 6778889999999999


Q ss_pred             cCCCCcEEEEEeCCCeEEEEeCCCCe----eEEEeecccccEEEEEEcCCCCeEEEEeCCCcEEEEecC----ccceehc
Q 021247          209 SPVDPRVLFSASDDTHVHMYDAEGKS----LVTAMSGHASWVLSVDASPDGAAITTGSSDRTVKLWDLN----MRAAMQS  280 (315)
Q Consensus       209 ~~~~~~~l~s~~~d~~i~~wd~~~~~----~~~~~~~~~~~i~~~~~~~~~~~l~s~~~d~~i~iwd~~----~~~~~~~  280 (315)
                      +|..+.+|++++.|++.+|||++.-.    .......|.-.|.+..|||.+-.|+|.+.|..|+|||..    .-.++.+
T Consensus       331 NP~~p~~laT~s~D~T~kIWD~R~l~~K~sp~lst~~HrrsV~sAyFSPs~gtl~TT~~D~~IRv~dss~~sa~~~p~~~  410 (498)
T KOG4328|consen  331 NPVCPWFLATASLDQTAKIWDLRQLRGKASPFLSTLPHRRSVNSAYFSPSGGTLLTTCQDNEIRVFDSSCISAKDEPLGT  410 (498)
T ss_pred             CCCCchheeecccCcceeeeehhhhcCCCCcceecccccceeeeeEEcCCCCceEeeccCCceEEeecccccccCCccce
Confidence            99999999999999999999987421    223335688999999999988789999999999999984    2233333


Q ss_pred             ccccc----cc--eEEEEEeeCCCEEEEEeCCCcEEEeec
Q 021247          281 MTNHT----DQ--VWGVSFRPLGGRVVSVSDDKSISLYEY  314 (315)
Q Consensus       281 ~~~~~----~~--v~~~~~s~~~~~l~s~~~d~~i~i~~~  314 (315)
                      + .|.    ..  ....+|.|+-.+++.+-.-..|-|||-
T Consensus       411 I-~Hn~~t~RwlT~fKA~W~P~~~li~vg~~~r~IDv~~~  449 (498)
T KOG4328|consen  411 I-PHNNRTGRWLTPFKAAWDPDYNLIVVGRYPRPIDVFDG  449 (498)
T ss_pred             e-eccCcccccccchhheeCCCccEEEEeccCcceeEEcC
Confidence            3 232    22  346789999999999999999988873

>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]

Probab=99.93  E-value=7.2e-24  Score=173.30  Aligned_cols=263  Identities=19%  Similarity=0.303  Sum_probs=202.6

Q ss_pred             ceEEEEEeecCCCCCcEEEEeeCCCcEEEEcCCCC--cc--eeeccccccceEEEEeCCCCCEEEEeeCCCeEEEEECCC
Q 021247           16 SVWAVTWVPATETRPALLLTGSLDETVKLWRPDDM--QL--ERTNTGHCLGVVSVAAHPSGIIAASASLDSFVRVFDVDT   91 (315)
Q Consensus        16 ~v~~v~~~~~~~~~~~~l~sgs~d~~v~~w~~~~~--~~--~~~~~~h~~~v~~~~~~~~g~~l~s~~~d~~i~~w~~~~   91 (315)
                      .++.+.|.....   ...++-+.|..+++|.-...  +.  .....+.  .-.|+.......++++|+..+.|+|||++.
T Consensus        36 g~~s~~w~~~n~---lvvas~~gdk~~~~~~K~g~~~~Vp~~~k~~gd--~~~Cv~~~s~S~y~~sgG~~~~Vkiwdl~~  110 (673)
T KOG4378|consen   36 GDFSFNWQRRNF---LVVASMAGDKVMRIKEKDGKTPEVPRVRKLTGD--NAFCVACASQSLYEISGGQSGCVKIWDLRA  110 (673)
T ss_pred             cceeeeccccce---EEEeecCCceeEEEecccCCCCccceeeccccc--hHHHHhhhhcceeeeccCcCceeeehhhHH
Confidence            488888875321   23444456888999964322  12  2222333  223444444558999999999999999998


Q ss_pred             CceeEEeeCCcccEEEEEECCCCCeEEEEecCCCeEEEEecCCcceeeeecCCCCCCCCCCccCCCCcceEEEEECCCCC
Q 021247           92 NASIATLEASPSEVWQMQFDPKGTTLAVAGGGSASVKLWDTATWNLIATLSIPRPEGLKPTDKSSSKKFVLSVAWSPDGR  171 (315)
Q Consensus        92 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~  171 (315)
                      ..+.+.++.|...|.++.|+....++ ++++..|.|.+..+.++.....+..+.            ...++-+.|+|..+
T Consensus       111 kl~hr~lkdh~stvt~v~YN~~Deyi-Asvs~gGdiiih~~~t~~~tt~f~~~s------------gqsvRll~ys~skr  177 (673)
T KOG4378|consen  111 KLIHRFLKDHQSTVTYVDYNNTDEYI-ASVSDGGDIIIHGTKTKQKTTTFTIDS------------GQSVRLLRYSPSKR  177 (673)
T ss_pred             HHHhhhccCCcceeEEEEecCCccee-EEeccCCcEEEEecccCccccceecCC------------CCeEEEeecccccc
Confidence            87888899999999999999888876 567788999999987754443333221            23367899999776


Q ss_pred             E-EEEecCCCcEEEEEcccceeeee-ecCCccceEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCeeEEEeecccccEEEE
Q 021247          172 R-IACGSMDGTISVFDVTRAKFLHH-LEGHFMPVRSLVYSPVDPRVLFSASDDTHVHMYDAEGKSLVTAMSGHASWVLSV  249 (315)
Q Consensus       172 ~-l~~~s~dg~i~i~d~~~~~~~~~-~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~i~~~  249 (315)
                      . |.+++.+|.|.+||+....++.. ...|..|...|+|+|.+..+|++.+.|.+|.+||.........+.. ..+...+
T Consensus       178 ~lL~~asd~G~VtlwDv~g~sp~~~~~~~HsAP~~gicfspsne~l~vsVG~Dkki~~yD~~s~~s~~~l~y-~~Plstv  256 (673)
T KOG4378|consen  178 FLLSIASDKGAVTLWDVQGMSPIFHASEAHSAPCRGICFSPSNEALLVSVGYDKKINIYDIRSQASTDRLTY-SHPLSTV  256 (673)
T ss_pred             eeeEeeccCCeEEEEeccCCCcccchhhhccCCcCcceecCCccceEEEecccceEEEeecccccccceeee-cCCccee
Confidence            5 46789999999999977666554 4579999999999999999999999999999999987665554442 3457789


Q ss_pred             EEcCCCCeEEEEeCCCcEEEEecCcc-ceehcccccccceEEEEEeeCC
Q 021247          250 DASPDGAAITTGSSDRTVKLWDLNMR-AAMQSMTNHTDQVWGVSFRPLG  297 (315)
Q Consensus       250 ~~~~~~~~l~s~~~d~~i~iwd~~~~-~~~~~~~~~~~~v~~~~~s~~~  297 (315)
                      +|.++|.+|+.|...|.|..||++.. .++.++..|...|++++|-|..
T Consensus       257 af~~~G~~L~aG~s~G~~i~YD~R~~k~Pv~v~sah~~sVt~vafq~s~  305 (673)
T KOG4378|consen  257 AFSECGTYLCAGNSKGELIAYDMRSTKAPVAVRSAHDASVTRVAFQPSP  305 (673)
T ss_pred             eecCCceEEEeecCCceEEEEecccCCCCceEeeecccceeEEEeeecc
Confidence            99999999999999999999999864 5788888999999999999864

>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]

Probab=99.93  E-value=1.1e-23  Score=177.12  Aligned_cols=112  Identities=27%  Similarity=0.506  Sum_probs=100.2

Q ss_pred             eEEEEEcCCCCcEEEEEeCCCeEEEEeCCCC-------eeEEEeecccccEEEEEEcCC-CCeEEEEeCCCcEEEEecCc
Q 021247          203 VRSLVYSPVDPRVLFSASDDTHVHMYDAEGK-------SLVTAMSGHASWVLSVDASPD-GAAITTGSSDRTVKLWDLNM  274 (315)
Q Consensus       203 v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~-------~~~~~~~~~~~~i~~~~~~~~-~~~l~s~~~d~~i~iwd~~~  274 (315)
                      |+++.|.|.+++.|+.+++||.|++|.+..+       +.-..+..|...|.++.|+|- ...|++++.|-+|++||+..
T Consensus       630 vtDl~WdPFD~~rLAVa~ddg~i~lWr~~a~gl~e~~~tPe~~lt~h~eKI~slRfHPLAadvLa~asyd~Ti~lWDl~~  709 (1012)
T KOG1445|consen  630 VTDLHWDPFDDERLAVATDDGQINLWRLTANGLPENEMTPEKILTIHGEKITSLRFHPLAADVLAVASYDSTIELWDLAN  709 (1012)
T ss_pred             eeecccCCCChHHeeecccCceEEEEEeccCCCCcccCCcceeeecccceEEEEEecchhhhHhhhhhccceeeeeehhh
Confidence            6778888999999999999999999997632       234567889999999999993 46899999999999999999


Q ss_pred             cceehcccccccceEEEEEeeCCCEEEEEeCCCcEEEeec
Q 021247          275 RAAMQSMTNHTDQVWGVSFRPLGGRVVSVSDDKSISLYEY  314 (315)
Q Consensus       275 ~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~i~i~~~  314 (315)
                      ++....+.+|.++|.+++|||+|+.+++++.||+|++|..
T Consensus       710 ~~~~~~l~gHtdqIf~~AWSpdGr~~AtVcKDg~~rVy~P  749 (1012)
T KOG1445|consen  710 AKLYSRLVGHTDQIFGIAWSPDGRRIATVCKDGTLRVYEP  749 (1012)
T ss_pred             hhhhheeccCcCceeEEEECCCCcceeeeecCceEEEeCC
Confidence            9888889999999999999999999999999999999963

>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]

Probab=99.92  E-value=3.2e-23  Score=158.74  Aligned_cols=264  Identities=24%  Similarity=0.396  Sum_probs=193.9

Q ss_pred             CCcEEEEcCCCC--cc-eeeccccccceEEEEeCCCCC-EEEEeeCC-------CeEEEEECCCCc---------eeEEe
Q 021247           39 DETVKLWRPDDM--QL-ERTNTGHCLGVVSVAAHPSGI-IAASASLD-------SFVRVFDVDTNA---------SIATL   98 (315)
Q Consensus        39 d~~v~~w~~~~~--~~-~~~~~~h~~~v~~~~~~~~g~-~l~s~~~d-------~~i~~w~~~~~~---------~~~~~   98 (315)
                      |+.|.+.+++..  .+ .+.+..|.+.|..++-+|... +|+++-.+       ..+-+|++....         ++..+
T Consensus        39 dNqVhll~~d~e~s~l~skvf~h~agEvw~las~P~d~~ilaT~yn~~s~s~vl~~aaiw~ipe~~~~S~~~tlE~v~~L  118 (370)
T KOG1007|consen   39 DNQVHLLRLDSEGSELLSKVFFHHAGEVWDLASSPFDQRILATVYNDTSDSGVLTGAAIWQIPEPLGQSNSSTLECVASL  118 (370)
T ss_pred             cceeEEEEecCccchhhhhhhhcCCcceehhhcCCCCCceEEEEEeccCCCcceeeEEEEecccccCccccchhhHhhcC
Confidence            677777665432  22 334556778899999999764 55555432       236799986542         22223


Q ss_pred             e-CCcccEEEEEECCCCCeEEEEecCCCeEEEEecCCcce-eeeecCCCCCCCCCCccCCCCcceEEEEECC--CCCEEE
Q 021247           99 E-ASPSEVWQMQFDPKGTTLAVAGGGSASVKLWDTATWNL-IATLSIPRPEGLKPTDKSSSKKFVLSVAWSP--DGRRIA  174 (315)
Q Consensus        99 ~-~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~~d~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~--~~~~l~  174 (315)
                      + .+.+.+.++.|.|++..++  +-.|..|.+|++..... +..+..+..        ..+....++-+|+|  +++.++
T Consensus       119 dteavg~i~cvew~Pns~kla--sm~dn~i~l~~l~ess~~vaev~ss~s--------~e~~~~ftsg~WspHHdgnqv~  188 (370)
T KOG1007|consen  119 DTEAVGKINCVEWEPNSDKLA--SMDDNNIVLWSLDESSKIVAEVLSSES--------AEMRHSFTSGAWSPHHDGNQVA  188 (370)
T ss_pred             CHHHhCceeeEEEcCCCCeeE--EeccCceEEEEcccCcchheeeccccc--------ccccceecccccCCCCccceEE
Confidence            2 2345789999999887664  34589999999987655 333332221        12344577889999  577766


Q ss_pred             EecCCCcEEEEEcccceeeeeec-CCccceEEEEEcCCCCcEEEEEeCCCeEEEEeCCC-CeeEEEeecccccEEEEEEc
Q 021247          175 CGSMDGTISVFDVTRAKFLHHLE-GHFMPVRSLVYSPVDPRVLFSASDDTHVHMYDAEG-KSLVTAMSGHASWVLSVDAS  252 (315)
Q Consensus       175 ~~s~dg~i~i~d~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~-~~~~~~~~~~~~~i~~~~~~  252 (315)
                      +. .|+++..||+++......+. .|...|+.+.|+|....+|+++++|+.|++||.+. ...+..+.+|.-|++++.|+
T Consensus       189 tt-~d~tl~~~D~RT~~~~~sI~dAHgq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~tk~pv~el~~HsHWvW~VRfn  267 (370)
T KOG1007|consen  189 TT-SDSTLQFWDLRTMKKNNSIEDAHGQRVRDLDFNPNKQHILVTCGDDGYVRIWDTRKTKFPVQELPGHSHWVWAVRFN  267 (370)
T ss_pred             Ee-CCCcEEEEEccchhhhcchhhhhcceeeeccCCCCceEEEEEcCCCccEEEEeccCCCccccccCCCceEEEEEEec
Confidence            55 68899999999877665554 57778999999998888999999999999999985 45678889999999999999


Q ss_pred             C-CCCeEEEEeCCCcEEEEecCcc-----------------------------ceehcccccccceEEEEEeeCCCEE-E
Q 021247          253 P-DGAAITTGSSDRTVKLWDLNMR-----------------------------AAMQSMTNHTDQVWGVSFRPLGGRV-V  301 (315)
Q Consensus       253 ~-~~~~l~s~~~d~~i~iwd~~~~-----------------------------~~~~~~~~~~~~v~~~~~s~~~~~l-~  301 (315)
                      | ..+++++|+.|..|.+|...+-                             ..++++..|++.|.+++||....++ |
T Consensus       268 ~~hdqLiLs~~SDs~V~Lsca~svSSE~qi~~~~dese~e~~dseer~kpL~dg~l~tydehEDSVY~~aWSsadPWiFA  347 (370)
T KOG1007|consen  268 PEHDQLILSGGSDSAVNLSCASSVSSEQQIEFEDDESESEDEDSEERVKPLQDGQLETYDEHEDSVYALAWSSADPWIFA  347 (370)
T ss_pred             CccceEEEecCCCceeEEEeccccccccccccccccccCcchhhHHhcccccccccccccccccceEEEeeccCCCeeEE
Confidence            9 4678999999999999965310                             0123566799999999999877765 7


Q ss_pred             EEeCCCcEEEee
Q 021247          302 SVSDDKSISLYE  313 (315)
Q Consensus       302 s~~~d~~i~i~~  313 (315)
                      +.+.||++.|=.
T Consensus       348 SLSYDGRviIs~  359 (370)
T KOG1007|consen  348 SLSYDGRVIISS  359 (370)
T ss_pred             EeccCceEEeec
Confidence            999999998743

>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]

Probab=99.92  E-value=1.5e-23  Score=176.03  Aligned_cols=257  Identities=22%  Similarity=0.328  Sum_probs=179.6

Q ss_pred             hccccceEEEEEeecCCCCCcEEEEeeCCCcEEEEcCCCCcceee--ccccccceEEEEeCCCC-CEEEEeeCCCeEEEE
Q 021247           11 NAHEESVWAVTWVPATETRPALLLTGSLDETVKLWRPDDMQLERT--NTGHCLGVVSVAAHPSG-IIAASASLDSFVRVF   87 (315)
Q Consensus        11 ~~h~~~v~~v~~~~~~~~~~~~l~sgs~d~~v~~w~~~~~~~~~~--~~~h~~~v~~~~~~~~g-~~l~s~~~d~~i~~w   87 (315)
                      -+|...|+.+.|.| +.   ..|++++.|.++++||..+..+...  ..||...|.+++|.+.. ..+++|+.||.|.||
T Consensus        97 ~aH~nAifDl~wap-ge---~~lVsasGDsT~r~Wdvk~s~l~G~~~~~GH~~SvkS~cf~~~n~~vF~tGgRDg~illW  172 (720)
T KOG0321|consen   97 LAHKNAIFDLKWAP-GE---SLLVSASGDSTIRPWDVKTSRLVGGRLNLGHTGSVKSECFMPTNPAVFCTGGRDGEILLW  172 (720)
T ss_pred             ccccceeEeeccCC-Cc---eeEEEccCCceeeeeeeccceeecceeecccccccchhhhccCCCcceeeccCCCcEEEE
Confidence            38999999999999 33   4799999999999999998887665  78999999999999977 578899999999999


Q ss_pred             ECCCCce-------eE--------------------EeeCCcccEEE---EEECCCCCeEEEEecCCCeEEEEecCCcce
Q 021247           88 DVDTNAS-------IA--------------------TLEASPSEVWQ---MQFDPKGTTLAVAGGGSASVKLWDTATWNL  137 (315)
Q Consensus        88 ~~~~~~~-------~~--------------------~~~~~~~~v~~---~~~~~~~~~~~~~~~~d~~i~~~d~~~~~~  137 (315)
                      |++....       ..                    .-..+...+..   +-+..+...++.+|..|+.|+|||++....
T Consensus       173 D~R~n~~d~~e~~~~~~~~~~n~~ptpskp~~kr~~k~kA~s~ti~ssvTvv~fkDe~tlaSaga~D~~iKVWDLRk~~~  252 (720)
T KOG0321|consen  173 DCRCNGVDALEEFDNRIYGRHNTAPTPSKPLKKRIRKWKAASNTIFSSVTVVLFKDESTLASAGAADSTIKVWDLRKNYT  252 (720)
T ss_pred             EEeccchhhHHHHhhhhhccccCCCCCCchhhccccccccccCceeeeeEEEEEeccceeeeccCCCcceEEEeeccccc
Confidence            9865420       00                    00112222333   334445555555555699999999986443


Q ss_pred             eeeecCCCCCCCCCCccCCCCcceEEEEECCCCCEEEEecCCCcEEEEEcccce--eeeeecCCccceE--EEEEcCCCC
Q 021247          138 IATLSIPRPEGLKPTDKSSSKKFVLSVAWSPDGRRIACGSMDGTISVFDVTRAK--FLHHLEGHFMPVR--SLVYSPVDP  213 (315)
Q Consensus       138 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~s~dg~i~i~d~~~~~--~~~~~~~~~~~v~--~~~~~~~~~  213 (315)
                      ....... +....+.. ......+.++.....|.+|++...|+.|++|++.+..  .+..+.++...-.  .-..+| ++
T Consensus       253 ~~r~ep~-~~~~~~t~-skrs~G~~nL~lDssGt~L~AsCtD~sIy~ynm~s~s~sP~~~~sg~~~~sf~vks~lSp-d~  329 (720)
T KOG0321|consen  253 AYRQEPR-GSDKYPTH-SKRSVGQVNLILDSSGTYLFASCTDNSIYFYNMRSLSISPVAEFSGKLNSSFYVKSELSP-DD  329 (720)
T ss_pred             ccccCCC-cccCccCc-ccceeeeEEEEecCCCCeEEEEecCCcEEEEeccccCcCchhhccCcccceeeeeeecCC-CC
Confidence            2221110 00001111 1112347788888888988877779999999997543  2333333322111  112356 67


Q ss_pred             cEEEEEeCCCeEEEEeCCCCe-eEEEeecccccEEEEEEcCCC-CeEEEEeCCCcEEEEecCc
Q 021247          214 RVLFSASDDTHVHMYDAEGKS-LVTAMSGHASWVLSVDASPDG-AAITTGSSDRTVKLWDLNM  274 (315)
Q Consensus       214 ~~l~s~~~d~~i~~wd~~~~~-~~~~~~~~~~~i~~~~~~~~~-~~l~s~~~d~~i~iwd~~~  274 (315)
                      .++++|+.|...++|.+...+ ....+.+|.-.|++++|.|.. .-++|++.|.++++|++..
T Consensus       330 ~~l~SgSsd~~ayiw~vs~~e~~~~~l~Ght~eVt~V~w~pS~~t~v~TcSdD~~~kiW~l~~  392 (720)
T KOG0321|consen  330 CSLLSGSSDEQAYIWVVSSPEAPPALLLGHTREVTTVRWLPSATTPVATCSDDFRVKIWRLSN  392 (720)
T ss_pred             ceEeccCCCcceeeeeecCccCChhhhhCcceEEEEEeeccccCCCceeeccCcceEEEeccC
Confidence            899999999999999987654 344567899999999998843 3578889999999999853

>KOG0270 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.92  E-value=2.9e-23  Score=167.40  Aligned_cols=231  Identities=18%  Similarity=0.309  Sum_probs=177.5

Q ss_pred             CCCEEEEeeCCCeEEEEECCCCce---eEE------------------eeCCcccEEEEEECCCCCeEEEEecCCCeEEE
Q 021247           71 SGIIAASASLDSFVRVFDVDTNAS---IAT------------------LEASPSEVWQMQFDPKGTTLAVAGGGSASVKL  129 (315)
Q Consensus        71 ~g~~l~s~~~d~~i~~w~~~~~~~---~~~------------------~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~  129 (315)
                      -|+++|.|..|..|.|||+.--..   ..+                  -.+|.+.|..+.|+..-+.++++|+.|.+|++
T Consensus       191 ~gNyvAiGtmdp~IeIWDLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n~~~~nVLaSgsaD~TV~l  270 (463)
T KOG0270|consen  191 AGNYVAIGTMDPEIEIWDLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWNRNFRNVLASGSADKTVKL  270 (463)
T ss_pred             CcceEEEeccCceeEEeccccccccccceeechhhhhhhhhhcccccccccchHHHHHHHhccccceeEEecCCCceEEE
Confidence            468999999999999999863211   011                  12467778899999888889999999999999


Q ss_pred             EecCCcceeeeecCCCCCCCCCCccCCCCcceEEEEECCC-CCEEEEecCCCcEEEEEcccceeeeeecCCccceEEEEE
Q 021247          130 WDTATWNLIATLSIPRPEGLKPTDKSSSKKFVLSVAWSPD-GRRIACGSMDGTISVFDVTRAKFLHHLEGHFMPVRSLVY  208 (315)
Q Consensus       130 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-~~~l~~~s~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~  208 (315)
                      ||+.++++..++..             |...|.++.|+|. ...|++|+.|+++.+.|.+........=.-.+.|-.++|
T Consensus       271 WD~~~g~p~~s~~~-------------~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~~~~s~~~wk~~g~VEkv~w  337 (463)
T KOG0270|consen  271 WDVDTGKPKSSITH-------------HGKKVQTLEWHPYEPSVLLSGSYDGTVALKDCRDPSNSGKEWKFDGEVEKVAW  337 (463)
T ss_pred             EEcCCCCcceehhh-------------cCCceeEEEecCCCceEEEeccccceEEeeeccCccccCceEEeccceEEEEe
Confidence            99999888776642             3445999999994 678899999999999999842211111112357888999


Q ss_pred             cCCCCcEEEEEeCCCeEEEEeCCCC-eeEEEeecccccEEEEEEcCC-CCeEEEEeCCCcEEEEecCcccee--hccccc
Q 021247          209 SPVDPRVLFSASDDTHVHMYDAEGK-SLVTAMSGHASWVLSVDASPD-GAAITTGSSDRTVKLWDLNMRAAM--QSMTNH  284 (315)
Q Consensus       209 ~~~~~~~l~s~~~d~~i~~wd~~~~-~~~~~~~~~~~~i~~~~~~~~-~~~l~s~~~d~~i~iwd~~~~~~~--~~~~~~  284 (315)
                      .|.....++++.+||.++-+|++.. +.+-.+..|.+.|.++++++. ..+++|++.|+.|++|++..-.+.  +.-.-.
T Consensus       338 ~~~se~~f~~~tddG~v~~~D~R~~~~~vwt~~AHd~~ISgl~~n~~~p~~l~t~s~d~~Vklw~~~~~~~~~v~~~~~~  417 (463)
T KOG0270|consen  338 DPHSENSFFVSTDDGTVYYFDIRNPGKPVWTLKAHDDEISGLSVNIQTPGLLSTASTDKVVKLWKFDVDSPKSVKEHSFK  417 (463)
T ss_pred             cCCCceeEEEecCCceEEeeecCCCCCceeEEEeccCCcceEEecCCCCcceeeccccceEEEEeecCCCCccccccccc
Confidence            9988889999999999999999864 788889999999999999885 457899999999999998653332  211111


Q ss_pred             ccceEEEEEeeCCC-EEEEEeCCCcEEEeec
Q 021247          285 TDQVWGVSFRPLGG-RVVSVSDDKSISLYEY  314 (315)
Q Consensus       285 ~~~v~~~~~s~~~~-~l~s~~~d~~i~i~~~  314 (315)
                      -+...+.++.|+-. .++.||..+.++|||+
T Consensus       418 ~~rl~c~~~~~~~a~~la~GG~k~~~~vwd~  448 (463)
T KOG0270|consen  418 LGRLHCFALDPDVAFTLAFGGEKAVLRVWDI  448 (463)
T ss_pred             ccceeecccCCCcceEEEecCccceEEEeec
Confidence            23455667777644 5677888888999996

>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]

Probab=99.92  E-value=1e-24  Score=188.06  Aligned_cols=288  Identities=19%  Similarity=0.333  Sum_probs=227.5

Q ss_pred             cccchhhhhhccccceEEEEEeecCCCCCcEEEEeeCCCcEEEEcCCCCcceeeccccccceEEEEeCCCCCEEEEeeCC
Q 021247            2 KFAGLKSVENAHEESVWAVTWVPATETRPALLLTGSLDETVKLWRPDDMQLERTNTGHCLGVVSVAAHPSGIIAASASLD   81 (315)
Q Consensus         2 ~~~~~~~~~~~h~~~v~~v~~~~~~~~~~~~l~sgs~d~~v~~w~~~~~~~~~~~~~h~~~v~~~~~~~~g~~l~s~~~d   81 (315)
                      |.++...=+.+|...|+|+.|-..+.    ++++|+.|..|+||..++..+.....||...++.++.+....++++++.|
T Consensus       178 qkmk~ikrLlgH~naVyca~fDrtg~----~Iitgsdd~lvKiwS~et~~~lAs~rGhs~ditdlavs~~n~~iaaaS~D  253 (1113)
T KOG0644|consen  178 QKMKNIKRLLGHRNAVYCAIFDRTGR----YIITGSDDRLVKIWSMETARCLASCRGHSGDITDLAVSSNNTMIAAASND  253 (1113)
T ss_pred             HHHHHHHHHHhhhhheeeeeeccccc----eEeecCccceeeeeeccchhhhccCCCCccccchhccchhhhhhhhcccC
Confidence            34555556789999999999987776    69999999999999999988889999999999999999999999999999


Q ss_pred             CeEEEEECCCCceeEEeeCCcccEEEEEECCCCCeEEEEecCCCeEEEEecCCcceeeeecCCCCCCCCCCccCCCCcce
Q 021247           82 SFVRVFDVDTNASIATLEASPSEVWQMQFDPKGTTLAVAGGGSASVKLWDTATWNLIATLSIPRPEGLKPTDKSSSKKFV  161 (315)
Q Consensus        82 ~~i~~w~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i  161 (315)
                      ..|++|.+.++..+..+.+|.+.|.+++|+|-.     +.+.||++++||.+ ..  .....|++.      +...++.+
T Consensus       254 ~vIrvWrl~~~~pvsvLrghtgavtaiafsP~~-----sss~dgt~~~wd~r-~~--~~~y~prp~------~~~~~~~~  319 (1113)
T KOG0644|consen  254 KVIRVWRLPDGAPVSVLRGHTGAVTAIAFSPRA-----SSSDDGTCRIWDAR-LE--PRIYVPRPL------KFTEKDLV  319 (1113)
T ss_pred             ceEEEEecCCCchHHHHhccccceeeeccCccc-----cCCCCCceEecccc-cc--ccccCCCCC------Ccccccce
Confidence            999999999999999999999999999999963     56889999999987 11  112222221      12233557


Q ss_pred             EEEEECCCCCEEEEecCCCcEEEEEcccceeeeeecCCccceEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCeeEEEeec
Q 021247          162 LSVAWSPDGRRIACGSMDGTISVFDVTRAKFLHHLEGHFMPVRSLVYSPVDPRVLFSASDDTHVHMYDAEGKSLVTAMSG  241 (315)
Q Consensus       162 ~~~~~~~~~~~l~~~s~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~  241 (315)
                      .++-|...+..+++++.|+.-..|.......      +...+.-+.++.+-..+.+++-.+..+.+|++..+.+.+.+.+
T Consensus       320 ~s~~~~~~~~~f~Tgs~d~ea~n~e~~~l~~------~~~~lif~t~ssd~~~~~~~ar~~~~~~vwnl~~g~l~H~l~g  393 (1113)
T KOG0644|consen  320 DSILFENNGDRFLTGSRDGEARNHEFEQLAW------RSNLLIFVTRSSDLSSIVVTARNDHRLCVWNLYTGQLLHNLMG  393 (1113)
T ss_pred             eeeeccccccccccccCCcccccchhhHhhh------hccceEEEeccccccccceeeeeeeEeeeeecccchhhhhhcc
Confidence            7788888889999999999988887543221      1111111222222224566777788899999999999999999


Q ss_pred             ccccEEEEEEcC-CCCeEEEEeCCCcEEEEecCccceehcc-cccccceEEEEEeeCCCEEEEEeCCCcEEEeec
Q 021247          242 HASWVLSVDASP-DGAAITTGSSDRTVKLWDLNMRAAMQSM-TNHTDQVWGVSFRPLGGRVVSVSDDKSISLYEY  314 (315)
Q Consensus       242 ~~~~i~~~~~~~-~~~~l~s~~~d~~i~iwd~~~~~~~~~~-~~~~~~v~~~~~s~~~~~l~s~~~d~~i~i~~~  314 (315)
                      |...+..+.++| +.++..+++.||...|||+-.+.+.+.. .+|. .+...+||++|..++...+-|.+.|+..
T Consensus       394 hsd~~yvLd~Hpfn~ri~msag~dgst~iwdi~eg~pik~y~~gh~-kl~d~kFSqdgts~~lsd~hgql~i~g~  467 (1113)
T KOG0644|consen  394 HSDEVYVLDVHPFNPRIAMSAGYDGSTIIWDIWEGIPIKHYFIGHG-KLVDGKFSQDGTSIALSDDHGQLYILGT  467 (1113)
T ss_pred             cccceeeeeecCCCcHhhhhccCCCceEeeecccCCcceeeecccc-eeeccccCCCCceEecCCCCCceEEecc
Confidence            999999999999 4567789999999999999887665443 3454 5567899999999888888888888754

>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]

Probab=99.91  E-value=1.6e-23  Score=171.57  Aligned_cols=237  Identities=19%  Similarity=0.288  Sum_probs=195.5

Q ss_pred             ccceEEEEEeecCCCCCcEEEEeeCCCcEEEEcCCCCcc--eeeccccccceEEEEeCCCCCEEEEeeCCCeEEEEECCC
Q 021247           14 EESVWAVTWVPATETRPALLLTGSLDETVKLWRPDDMQL--ERTNTGHCLGVVSVAAHPSGIIAASASLDSFVRVFDVDT   91 (315)
Q Consensus        14 ~~~v~~v~~~~~~~~~~~~l~sgs~d~~v~~w~~~~~~~--~~~~~~h~~~v~~~~~~~~g~~l~s~~~d~~i~~w~~~~   91 (315)
                      ++.+-.+...|+++    .|++|+.-.++.|||+.....  ..++......+..++.+||.++.+++..||.|.|||+.+
T Consensus       465 dnyiRSckL~pdgr----tLivGGeastlsiWDLAapTprikaeltssapaCyALa~spDakvcFsccsdGnI~vwDLhn  540 (705)
T KOG0639|consen  465 DNYIRSCKLLPDGR----TLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDAKVCFSCCSDGNIAVWDLHN  540 (705)
T ss_pred             ccceeeeEecCCCc----eEEeccccceeeeeeccCCCcchhhhcCCcchhhhhhhcCCccceeeeeccCCcEEEEEccc
Confidence            34566777778776    499999999999999875433  223444445678899999999999999999999999999


Q ss_pred             CceeEEeeCCcccEEEEEECCCCCeEEEEecCCCeEEEEecCCcceeeeecCCCCCCCCCCccCCCCcceEEEEECCCCC
Q 021247           92 NASIATLEASPSEVWQMQFDPKGTTLAVAGGGSASVKLWDTATWNLIATLSIPRPEGLKPTDKSSSKKFVLSVAWSPDGR  171 (315)
Q Consensus        92 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~  171 (315)
                      ...+..+.+|.+.+.++.++++|..+ -+|+-|++|+.||++.+..+..              ......|.++.++|++.
T Consensus       541 q~~VrqfqGhtDGascIdis~dGtkl-WTGGlDntvRcWDlregrqlqq--------------hdF~SQIfSLg~cP~~d  605 (705)
T KOG0639|consen  541 QTLVRQFQGHTDGASCIDISKDGTKL-WTGGLDNTVRCWDLREGRQLQQ--------------HDFSSQIFSLGYCPTGD  605 (705)
T ss_pred             ceeeecccCCCCCceeEEecCCCcee-ecCCCccceeehhhhhhhhhhh--------------hhhhhhheecccCCCcc
Confidence            99999999999999999999999865 7899999999999997654422              23345588999999999


Q ss_pred             EEEEecCCCcEEEEEcccceeeeeecCCccceEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCeeEEEeecccccEEEEEE
Q 021247          172 RIACGSMDGTISVFDVTRAKFLHHLEGHFMPVRSLVYSPVDPRVLFSASDDTHVHMYDAEGKSLVTAMSGHASWVLSVDA  251 (315)
Q Consensus       172 ~l~~~s~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~i~~~~~  251 (315)
                      +|+.|.+++.+.+-... +.....+..|...|.+++|.+ .++++++.+.|..+..|.+--+..+.+.. ....|.++++
T Consensus       606 WlavGMens~vevlh~s-kp~kyqlhlheScVLSlKFa~-cGkwfvStGkDnlLnawrtPyGasiFqsk-E~SsVlsCDI  682 (705)
T KOG0639|consen  606 WLAVGMENSNVEVLHTS-KPEKYQLHLHESCVLSLKFAY-CGKWFVSTGKDNLLNAWRTPYGASIFQSK-ESSSVLSCDI  682 (705)
T ss_pred             ceeeecccCcEEEEecC-CccceeecccccEEEEEEecc-cCceeeecCchhhhhhccCccccceeecc-ccCcceeeee
Confidence            99999999988776653 333456677999999999998 78899999999999999987665554443 4677999999


Q ss_pred             cCCCCeEEEEeCCCcEEEEec
Q 021247          252 SPDGAAITTGSSDRTVKLWDL  272 (315)
Q Consensus       252 ~~~~~~l~s~~~d~~i~iwd~  272 (315)
                      +.+.++++||+.|....+|.+
T Consensus       683 S~ddkyIVTGSGdkkATVYeV  703 (705)
T KOG0639|consen  683 SFDDKYIVTGSGDKKATVYEV  703 (705)
T ss_pred             ccCceEEEecCCCcceEEEEE
Confidence            999999999999998888865

>COG2319 FOG: WD40 repeat [General function prediction only]

Probab=99.91  E-value=1.8e-20  Score=162.55  Aligned_cols=286  Identities=39%  Similarity=0.602  Sum_probs=222.6

Q ss_pred             hhhccccceEEEEEeecCCCCCcEEEEeeCCCcEEEEcCCCCc-ceeeccccc-cceEEEEe-CCCCC-EEEEeeC-CCe
Q 021247            9 VENAHEESVWAVTWVPATETRPALLLTGSLDETVKLWRPDDMQ-LERTNTGHC-LGVVSVAA-HPSGI-IAASASL-DSF   83 (315)
Q Consensus         9 ~~~~h~~~v~~v~~~~~~~~~~~~l~sgs~d~~v~~w~~~~~~-~~~~~~~h~-~~v~~~~~-~~~g~-~l~s~~~-d~~   83 (315)
                      ....|...+.++.+.+...    .++.++.|+.+.+|+..... ....+.++. ..+..+.. ++++. +++..+. |+.
T Consensus        60 ~~~~~~~~i~~~~~~~~~~----~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~  135 (466)
T COG2319          60 LLRGHEDSITSIAFSPDGE----LLLSGSSDGTIKLWDLDNGEKLIKSLEGLHDSSVSKLALSSPDGNSILLASSSLDGT  135 (466)
T ss_pred             eeeeccceEEEEEECCCCc----EEEEecCCCcEEEEEcCCCceeEEEEeccCCCceeeEEEECCCcceEEeccCCCCcc
Confidence            4568999999999988765    58888899999999987765 445555433 36666666 78887 5555444 999


Q ss_pred             EEEEECCC-CceeEEeeCCcccEEEEEECCCCCeEEEEecC-CCeEEEEecCCcceeeeecCCCCCCCCCCccCCCCcce
Q 021247           84 VRVFDVDT-NASIATLEASPSEVWQMQFDPKGTTLAVAGGG-SASVKLWDTATWNLIATLSIPRPEGLKPTDKSSSKKFV  161 (315)
Q Consensus        84 i~~w~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~-d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i  161 (315)
                      +++|+... ......+..|...+..++|+|++..+ +.++. ++.+++|+....+.+..+..             |...+
T Consensus       136 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~v  201 (466)
T COG2319         136 VKLWDLSTPGKLIRTLEGHSESVTSLAFSPDGKLL-ASGSSLDGTIKLWDLRTGKPLSTLAG-------------HTDPV  201 (466)
T ss_pred             EEEEEecCCCeEEEEEecCcccEEEEEECCCCCEE-EecCCCCCceEEEEcCCCceEEeecc-------------CCCce
Confidence            99999998 67778888899999999999999854 45554 99999999987555544432             45569


Q ss_pred             EEEEECCCCC-EEEEecCCCcEEEEEcccceeee-eecCCccceEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCee-EEE
Q 021247          162 LSVAWSPDGR-RIACGSMDGTISVFDVTRAKFLH-HLEGHFMPVRSLVYSPVDPRVLFSASDDTHVHMYDAEGKSL-VTA  238 (315)
Q Consensus       162 ~~~~~~~~~~-~l~~~s~dg~i~i~d~~~~~~~~-~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~-~~~  238 (315)
                      .+++|+|++. .+++++.|+.+++||...+.... .+..|.... ...|+|.+ .++++++.|+.+++|+.+.... ...
T Consensus       202 ~~~~~~~~~~~~~~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~-~~~~~~~~-~~~~~~~~d~~~~~~~~~~~~~~~~~  279 (466)
T COG2319         202 SSLAFSPDGGLLIASGSSDGTIRLWDLSTGKLLRSTLSGHSDSV-VSSFSPDG-SLLASGSSDGTIRLWDLRSSSSLLRT  279 (466)
T ss_pred             EEEEEcCCcceEEEEecCCCcEEEEECCCCcEEeeecCCCCcce-eEeECCCC-CEEEEecCCCcEEEeeecCCCcEEEE
Confidence            9999999998 55555999999999988777777 677887765 44788854 7888999999999999986543 444


Q ss_pred             eecccccEEEEEEcCCCCeEEEEeCCCcEEEEecCccceehccc--ccccceEEEEEeeCCCEEEEE-eCCCcEEEeec
Q 021247          239 MSGHASWVLSVDASPDGAAITTGSSDRTVKLWDLNMRAAMQSMT--NHTDQVWGVSFRPLGGRVVSV-SDDKSISLYEY  314 (315)
Q Consensus       239 ~~~~~~~i~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~--~~~~~v~~~~~s~~~~~l~s~-~~d~~i~i~~~  314 (315)
                      +..|...+.++.++|++..+++++.|+.+++|++..........  .|...+..+.|.+++..++.+ ..|+.+++|+.
T Consensus       280 ~~~~~~~v~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~  358 (466)
T COG2319         280 LSGHSSSVLSVAFSPDGKLLASGSSDGTVRLWDLETGKLLSSLTLKGHEGPVSSLSFSPDGSLLVSGGSDDGTIRLWDL  358 (466)
T ss_pred             EecCCccEEEEEECCCCCEEEEeeCCCcEEEEEcCCCceEEEeeecccCCceEEEEECCCCCEEEEeecCCCcEEeeec
Confidence            46788999999999988888889999999999988776655554  677778999994332456555 68899999875

>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]

Probab=99.91  E-value=4.6e-22  Score=168.33  Aligned_cols=273  Identities=21%  Similarity=0.318  Sum_probs=206.2

Q ss_pred             ceEEEEEeecCCCCCcEEEEeeCCCcEEEEcCCCCcceeeccccccceEEEEeCCCCCEEEEeeCCCeEEEEECCCCcee
Q 021247           16 SVWAVTWVPATETRPALLLTGSLDETVKLWRPDDMQLERTNTGHCLGVVSVAAHPSGIIAASASLDSFVRVFDVDTNASI   95 (315)
Q Consensus        16 ~v~~v~~~~~~~~~~~~l~sgs~d~~v~~w~~~~~~~~~~~~~h~~~v~~~~~~~~g~~l~s~~~d~~i~~w~~~~~~~~   95 (315)
                      .|+.++|-|++..   ++++  .+..+.+||+..+.+...+++|++.|.+++++.+|..++||+.|+.+.+|+..-... 
T Consensus        14 ci~d~afkPDGsq---L~lA--Ag~rlliyD~ndG~llqtLKgHKDtVycVAys~dGkrFASG~aDK~VI~W~~klEG~-   87 (1081)
T KOG1538|consen   14 CINDIAFKPDGTQ---LILA--AGSRLLVYDTSDGTLLQPLKGHKDTVYCVAYAKDGKRFASGSADKSVIIWTSKLEGI-   87 (1081)
T ss_pred             chheeEECCCCce---EEEe--cCCEEEEEeCCCcccccccccccceEEEEEEccCCceeccCCCceeEEEecccccce-
Confidence            8999999998864   3333  345899999999999999999999999999999999999999999999999654332 


Q ss_pred             EEeeCCcccEEEEEECCCCCeEEEEecCCCeEEEEecCCcceeeeecCCCCCCCCCCccCCCCcceEEEEECCCCCEEEE
Q 021247           96 ATLEASPSEVWQMQFDPKGTTLAVAGGGSASVKLWDTATWNLIATLSIPRPEGLKPTDKSSSKKFVLSVAWSPDGRRIAC  175 (315)
Q Consensus        96 ~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~  175 (315)
                      ..+ .|.+.|.++.|+|-...+ ++++ -....+|........               +.....++.+++|..||.+|+.
T Consensus        88 LkY-SH~D~IQCMsFNP~~h~L-asCs-LsdFglWS~~qK~V~---------------K~kss~R~~~CsWtnDGqylal  149 (1081)
T KOG1538|consen   88 LKY-SHNDAIQCMSFNPITHQL-ASCS-LSDFGLWSPEQKSVS---------------KHKSSSRIICCSWTNDGQYLAL  149 (1081)
T ss_pred             eee-ccCCeeeEeecCchHHHh-hhcc-hhhccccChhhhhHH---------------hhhhheeEEEeeecCCCcEEEE
Confidence            222 477899999999987655 4443 245667766542211               1223345889999999999999


Q ss_pred             ecCCCcEEEEEccccee--eeeecCCccceEEEEEcCCCC----cEEEEEeCCCeEEEEeCCCCeeEEEeecccccEEEE
Q 021247          176 GSMDGTISVFDVTRAKF--LHHLEGHFMPVRSLVYSPVDP----RVLFSASDDTHVHMYDAEGKSLVTAMSGHASWVLSV  249 (315)
Q Consensus       176 ~s~dg~i~i~d~~~~~~--~~~~~~~~~~v~~~~~~~~~~----~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~i~~~  249 (315)
                      |..+|+|.+-+-.....  +..-.+.+.+|.+++|+|..+    ..++......++.+|.+.+.. +..-..-.-...++
T Consensus       150 G~~nGTIsiRNk~gEek~~I~Rpgg~Nspiwsi~~~p~sg~G~~di~aV~DW~qTLSFy~LsG~~-Igk~r~L~FdP~Ci  228 (1081)
T KOG1538|consen  150 GMFNGTISIRNKNGEEKVKIERPGGSNSPIWSICWNPSSGEGRNDILAVADWGQTLSFYQLSGKQ-IGKDRALNFDPCCI  228 (1081)
T ss_pred             eccCceEEeecCCCCcceEEeCCCCCCCCceEEEecCCCCCCccceEEEEeccceeEEEEeccee-ecccccCCCCchhh
Confidence            99999999987533222  233345788999999998533    356677777777777765432 22222223345678


Q ss_pred             EEcCCCCeEEEEeCCCcEEEEecCccceehcccccccceEEEEEeeCCCEEEEEeCCCcEEEeec
Q 021247          250 DASPDGAAITTGSSDRTVKLWDLNMRAAMQSMTNHTDQVWGVSFRPLGGRVVSVSDDKSISLYEY  314 (315)
Q Consensus       250 ~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~i~i~~~  314 (315)
                      .+-|+|.+++.||.|+.+.+|--+ |-.+.++......||.|+..|++++++.|+.||+|-.|++
T Consensus       229 sYf~NGEy~LiGGsdk~L~~fTR~-GvrLGTvg~~D~WIWtV~~~PNsQ~v~~GCqDGTiACyNl  292 (1081)
T KOG1538|consen  229 SYFTNGEYILLGGSDKQLSLFTRD-GVRLGTVGEQDSWIWTVQAKPNSQYVVVGCQDGTIACYNL  292 (1081)
T ss_pred             eeccCCcEEEEccCCCceEEEeec-CeEEeeccccceeEEEEEEccCCceEEEEEccCeeehhhh
Confidence            889999999999999999999543 5556666555568999999999999999999999988764

>KOG2048 consensus WD40 repeat protein [General function prediction only]

Probab=99.91  E-value=4e-21  Score=162.59  Aligned_cols=238  Identities=22%  Similarity=0.291  Sum_probs=193.9

Q ss_pred             ccceEEEEeCCCCCEEEEeeCCCeEEEEECCCCceeE-EeeC-CcccEEEEEECCCCCeEEEEecCCCeEEEEecCCcce
Q 021247           60 CLGVVSVAAHPSGIIAASASLDSFVRVFDVDTNASIA-TLEA-SPSEVWQMQFDPKGTTLAVAGGGSASVKLWDTATWNL  137 (315)
Q Consensus        60 ~~~v~~~~~~~~g~~l~s~~~d~~i~~w~~~~~~~~~-~~~~-~~~~v~~~~~~~~~~~~~~~~~~d~~i~~~d~~~~~~  137 (315)
                      ..+|.+++++.+.+.||.+-.||.|.+|++..+-... .+.+ ....|..++|.+.++ + ++.+.+|.|.-||+.+.+.
T Consensus        25 Ps~I~slA~s~kS~~lAvsRt~g~IEiwN~~~~w~~~~vi~g~~drsIE~L~W~e~~R-L-FS~g~sg~i~EwDl~~lk~  102 (691)
T KOG2048|consen   25 PSEIVSLAYSHKSNQLAVSRTDGNIEIWNLSNNWFLEPVIHGPEDRSIESLAWAEGGR-L-FSSGLSGSITEWDLHTLKQ  102 (691)
T ss_pred             ccceEEEEEeccCCceeeeccCCcEEEEccCCCceeeEEEecCCCCceeeEEEccCCe-E-EeecCCceEEEEecccCce
Confidence            3579999999999999999999999999999875433 3333 345799999997665 3 5677899999999998877


Q ss_pred             eeeecCCCCCCCCCCccCCCCcceEEEEECCCCCEEEEecCCCcEEEEEcccceeeee--ecCCccceEEEEEcCCCCcE
Q 021247          138 IATLSIPRPEGLKPTDKSSSKKFVLSVAWSPDGRRIACGSMDGTISVFDVTRAKFLHH--LEGHFMPVRSLVYSPVDPRV  215 (315)
Q Consensus       138 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~s~dg~i~i~d~~~~~~~~~--~~~~~~~v~~~~~~~~~~~~  215 (315)
                      ...+..             ....|.+++.+|.+..++.|+.||.++.++...++....  +.-.++.+.+++|+| .+..
T Consensus       103 ~~~~d~-------------~gg~IWsiai~p~~~~l~IgcddGvl~~~s~~p~~I~~~r~l~rq~sRvLslsw~~-~~~~  168 (691)
T KOG2048|consen  103 KYNIDS-------------NGGAIWSIAINPENTILAIGCDDGVLYDFSIGPDKITYKRSLMRQKSRVLSLSWNP-TGTK  168 (691)
T ss_pred             eEEecC-------------CCcceeEEEeCCccceEEeecCCceEEEEecCCceEEEEeecccccceEEEEEecC-CccE
Confidence            765532             223489999999999999999999888888877765433  333457899999998 5667


Q ss_pred             EEEEeCCCeEEEEeCCCCeeEEEe-------e-cccccEEEEEEcCCCCeEEEEeCCCcEEEEecCccceehcccccccc
Q 021247          216 LFSASDDTHVHMYDAEGKSLVTAM-------S-GHASWVLSVDASPDGAAITTGSSDRTVKLWDLNMRAAMQSMTNHTDQ  287 (315)
Q Consensus       216 l~s~~~d~~i~~wd~~~~~~~~~~-------~-~~~~~i~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~  287 (315)
                      +++|+.||.|++||.+.+..+...       . ....-|+++.+-.++ .+++|..-|+|.+||...+...+.+..|...
T Consensus       169 i~~Gs~Dg~Iriwd~~~~~t~~~~~~~~d~l~k~~~~iVWSv~~Lrd~-tI~sgDS~G~V~FWd~~~gTLiqS~~~h~ad  247 (691)
T KOG2048|consen  169 IAGGSIDGVIRIWDVKSGQTLHIITMQLDRLSKREPTIVWSVLFLRDS-TIASGDSAGTVTFWDSIFGTLIQSHSCHDAD  247 (691)
T ss_pred             EEecccCceEEEEEcCCCceEEEeeecccccccCCceEEEEEEEeecC-cEEEecCCceEEEEcccCcchhhhhhhhhcc
Confidence            999999999999999987655521       1 133457888877554 6899999999999999999999999999999


Q ss_pred             eEEEEEeeCCCEEEEEeCCCcEEEeec
Q 021247          288 VWGVSFRPLGGRVVSVSDDKSISLYEY  314 (315)
Q Consensus       288 v~~~~~s~~~~~l~s~~~d~~i~i~~~  314 (315)
                      |.+++..+++.+|+++|.|+.|..|..
T Consensus       248 Vl~Lav~~~~d~vfsaGvd~~ii~~~~  274 (691)
T KOG2048|consen  248 VLALAVADNEDRVFSAGVDPKIIQYSL  274 (691)
T ss_pred             eeEEEEcCCCCeEEEccCCCceEEEEe
Confidence            999999999999999999999987753

>KOG2055 consensus WD40 repeat protein [General function prediction only]

Probab=99.90  E-value=9.3e-22  Score=159.55  Aligned_cols=240  Identities=20%  Similarity=0.293  Sum_probs=191.7

Q ss_pred             ccceEEEEeCCCCCEEEEeeCCCeEEEEECCCC--ceeEEeeCCcccEEEEEECCCCCeEEEEecCCCeEEEEecCCcce
Q 021247           60 CLGVVSVAAHPSGIIAASASLDSFVRVFDVDTN--ASIATLEASPSEVWQMQFDPKGTTLAVAGGGSASVKLWDTATWNL  137 (315)
Q Consensus        60 ~~~v~~~~~~~~g~~l~s~~~d~~i~~w~~~~~--~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~~d~~~~~~  137 (315)
                      ..+|++++|||...++++++.|+++++|.+...  ..++.+.....+|.+..|.|+|...+++++....+..||+.+.+.
T Consensus       213 ~~~I~sv~FHp~~plllvaG~d~~lrifqvDGk~N~~lqS~~l~~fPi~~a~f~p~G~~~i~~s~rrky~ysyDle~ak~  292 (514)
T KOG2055|consen  213 HGGITSVQFHPTAPLLLVAGLDGTLRIFQVDGKVNPKLQSIHLEKFPIQKAEFAPNGHSVIFTSGRRKYLYSYDLETAKV  292 (514)
T ss_pred             cCCceEEEecCCCceEEEecCCCcEEEEEecCccChhheeeeeccCccceeeecCCCceEEEecccceEEEEeecccccc
Confidence            468999999999999999999999999998754  346666667789999999999997778888899999999987665


Q ss_pred             eeeecCCCCCCCCCCccCCCCcceEEEEECCCCCEEEEecCCCcEEEEEcccceeeeeecCCccceEEEEEcCCCCcEEE
Q 021247          138 IATLSIPRPEGLKPTDKSSSKKFVLSVAWSPDGRRIACGSMDGTISVFDVTRAKFLHHLEGHFMPVRSLVYSPVDPRVLF  217 (315)
Q Consensus       138 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~s~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~  217 (315)
                      ...-   ++.+.       .+..+....+++++++|+..+..|.|.+.-..+++.+..++. .+.|..+.|+. +++.|+
T Consensus       293 ~k~~---~~~g~-------e~~~~e~FeVShd~~fia~~G~~G~I~lLhakT~eli~s~Ki-eG~v~~~~fsS-dsk~l~  360 (514)
T KOG2055|consen  293 TKLK---PPYGV-------EEKSMERFEVSHDSNFIAIAGNNGHIHLLHAKTKELITSFKI-EGVVSDFTFSS-DSKELL  360 (514)
T ss_pred             cccc---CCCCc-------ccchhheeEecCCCCeEEEcccCceEEeehhhhhhhhheeee-ccEEeeEEEec-CCcEEE
Confidence            4321   11111       123467788899999999999999999998888888877763 46889999996 678888


Q ss_pred             EEeCCCeEEEEeCCCCeeEEEeeccc-ccEEEEEEcCCCCeEEEEeCCCcEEEEecCc------cceehcccccccceEE
Q 021247          218 SASDDTHVHMYDAEGKSLVTAMSGHA-SWVLSVDASPDGAAITTGSSDRTVKLWDLNM------RAAMQSMTNHTDQVWG  290 (315)
Q Consensus       218 s~~~d~~i~~wd~~~~~~~~~~~~~~-~~i~~~~~~~~~~~l~s~~~d~~i~iwd~~~------~~~~~~~~~~~~~v~~  290 (315)
                      +++.+|.|.+||++...++....... -.=++++.++++++||+|+..|.|.|||.++      .+++.++.+-...|++
T Consensus       361 ~~~~~GeV~v~nl~~~~~~~rf~D~G~v~gts~~~S~ng~ylA~GS~~GiVNIYd~~s~~~s~~PkPik~~dNLtt~Its  440 (514)
T KOG2055|consen  361 ASGGTGEVYVWNLRQNSCLHRFVDDGSVHGTSLCISLNGSYLATGSDSGIVNIYDGNSCFASTNPKPIKTVDNLTTAITS  440 (514)
T ss_pred             EEcCCceEEEEecCCcceEEEEeecCccceeeeeecCCCceEEeccCcceEEEeccchhhccCCCCchhhhhhhheeeee
Confidence            88899999999999988877765322 2235778889999999999999999999764      3456666666778999


Q ss_pred             EEEeeCCCEEEEEeC--CCcEEE
Q 021247          291 VSFRPLGGRVVSVSD--DKSISL  311 (315)
Q Consensus       291 ~~~s~~~~~l~s~~~--d~~i~i  311 (315)
                      +.|+|++..||.+|.  +..+||
T Consensus       441 l~Fn~d~qiLAiaS~~~knalrL  463 (514)
T KOG2055|consen  441 LQFNHDAQILAIASRVKKNALRL  463 (514)
T ss_pred             eeeCcchhhhhhhhhccccceEE
Confidence            999999998876654  345554

>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]

Probab=99.89  E-value=4.2e-21  Score=149.40  Aligned_cols=243  Identities=20%  Similarity=0.341  Sum_probs=181.3

Q ss_pred             ceEEEEeCCCCCEEEEeeCCCeEEEEECCCCc------------eeEEee-CCcccEEEEEE-------CCCCCeEEEEe
Q 021247           62 GVVSVAAHPSGIIAASASLDSFVRVFDVDTNA------------SIATLE-ASPSEVWQMQF-------DPKGTTLAVAG  121 (315)
Q Consensus        62 ~v~~~~~~~~g~~l~s~~~d~~i~~w~~~~~~------------~~~~~~-~~~~~v~~~~~-------~~~~~~~~~~~  121 (315)
                      ....+.|+|||.-|++-+.|..+++|++....            ....+. .....|...+|       .|+.+ ++++.
T Consensus        51 f~kgckWSPDGSciL~~sedn~l~~~nlP~dlys~~~~~~~~~~~~~~~r~~eg~tvydy~wYs~M~s~qP~t~-l~a~s  129 (406)
T KOG2919|consen   51 FLKGCKWSPDGSCILSLSEDNCLNCWNLPFDLYSKKADGPLNFSKHLSYRYQEGETVYDYCWYSRMKSDQPSTN-LFAVS  129 (406)
T ss_pred             hhccceeCCCCceEEeecccCeeeEEecChhhcccCCCCccccccceeEEeccCCEEEEEEeeeccccCCCccc-eeeec
Confidence            34567899999999999999999999985321            011111 12334555555       35545 45667


Q ss_pred             cCCCeEEEEecCCcceeeeecCCCCCCCCCCccCCCCcceEEEEECCCCCEEEEecCCCcEEEEEc-ccceeeeee--c-
Q 021247          122 GGSASVKLWDTATWNLIATLSIPRPEGLKPTDKSSSKKFVLSVAWSPDGRRIACGSMDGTISVFDV-TRAKFLHHL--E-  197 (315)
Q Consensus       122 ~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~s~dg~i~i~d~-~~~~~~~~~--~-  197 (315)
                      +.+.-|++||.-+++..+.+..-...        ..-..-.+++|+|||.+|++|. .+.|++||+ ++++.....  . 
T Consensus       130 sr~~PIh~wdaftG~lraSy~~ydh~--------de~taAhsL~Fs~DGeqlfaGy-krcirvFdt~RpGr~c~vy~t~~  200 (406)
T KOG2919|consen  130 SRDQPIHLWDAFTGKLRASYRAYDHQ--------DEYTAAHSLQFSPDGEQLFAGY-KRCIRVFDTSRPGRDCPVYTTVT  200 (406)
T ss_pred             cccCceeeeeccccccccchhhhhhH--------HhhhhheeEEecCCCCeEeecc-cceEEEeeccCCCCCCcchhhhh
Confidence            88999999999999887766321100        0011135899999999999885 568999999 566532221  1 


Q ss_pred             ----CCccceEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCeeEEEeecccccEEEEEEcCCCCeEEEEeC-CCcEEEEec
Q 021247          198 ----GHFMPVRSLVYSPVDPRVLFSASDDTHVHMYDAEGKSLVTAMSGHASWVLSVDASPDGAAITTGSS-DRTVKLWDL  272 (315)
Q Consensus       198 ----~~~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~-d~~i~iwd~  272 (315)
                          +..+.+.+++|+|.+...++.++-..++-||.-..+.++..+.+|.+.|+.+.|.++|+.|.+|+. |-.|..||+
T Consensus       201 ~~k~gq~giisc~a~sP~~~~~~a~gsY~q~~giy~~~~~~pl~llggh~gGvThL~~~edGn~lfsGaRk~dkIl~WDi  280 (406)
T KOG2919|consen  201 KGKFGQKGIISCFAFSPMDSKTLAVGSYGQRVGIYNDDGRRPLQLLGGHGGGVTHLQWCEDGNKLFSGARKDDKILCWDI  280 (406)
T ss_pred             cccccccceeeeeeccCCCCcceeeecccceeeeEecCCCCceeeecccCCCeeeEEeccCcCeecccccCCCeEEEEee
Confidence                235678999999999999999999999999988888888889999999999999999999988876 678999999


Q ss_pred             Cc-cceehccccccc-ceEE--EEEeeCCCEEEEEeCCCcEEEeec
Q 021247          273 NM-RAAMQSMTNHTD-QVWG--VSFRPLGGRVVSVSDDKSISLYEY  314 (315)
Q Consensus       273 ~~-~~~~~~~~~~~~-~v~~--~~~s~~~~~l~s~~~d~~i~i~~~  314 (315)
                      +. +.++..+..|.+ .-..  ..+.|+++.|++|+.||.|++||+
T Consensus       281 R~~~~pv~~L~rhv~~TNQRI~FDld~~~~~LasG~tdG~V~vwdl  326 (406)
T KOG2919|consen  281 RYSRDPVYALERHVGDTNQRILFDLDPKGEILASGDTDGSVRVWDL  326 (406)
T ss_pred             hhccchhhhhhhhccCccceEEEecCCCCceeeccCCCccEEEEec
Confidence            86 456666666654 2222  455688999999999999999996

>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]

Probab=99.89  E-value=8e-21  Score=164.40  Aligned_cols=274  Identities=16%  Similarity=0.178  Sum_probs=196.2

Q ss_pred             CcEEEEcCCCCcceeeccccccceEEEEeCCC-CCEEEEeeCCCeEEEEECCCCce--eE----EeeCCcccEEEEEECC
Q 021247           40 ETVKLWRPDDMQLERTNTGHCLGVVSVAAHPS-GIIAASASLDSFVRVFDVDTNAS--IA----TLEASPSEVWQMQFDP  112 (315)
Q Consensus        40 ~~v~~w~~~~~~~~~~~~~h~~~v~~~~~~~~-g~~l~s~~~d~~i~~w~~~~~~~--~~----~~~~~~~~v~~~~~~~  112 (315)
                      +.+.+|+..+.........-..+|.++.|+|. ..+++.|..+|.|-+||+..+..  ..    ....|..+++.+.|..
T Consensus       222 ~~~~vW~~~~p~~Pe~~~~~~s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~s~ls~~~~sh~~~v~~vvW~~  301 (555)
T KOG1587|consen  222 GVLLVWSLKNPNTPELVLESPSEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTPPSGLSALEVSHSEPVTAVVWLQ  301 (555)
T ss_pred             ceEEEEecCCCCCceEEEecCCceeEEEeccCCcceEEeeccCceEEEEEccCCCCCCCcccccccccCCcCeEEEEEec
Confidence            47899998765222222234568999999985 47888999999999999987754  22    2245778899999865


Q ss_pred             CCCe-EEEEecCCCeEEEEecCCcceeeeecCCCCCCCCCCccCCCCcceEEEEECC-CCCEEEEecCCCcEEEEEcccc
Q 021247          113 KGTT-LAVAGGGSASVKLWDTATWNLIATLSIPRPEGLKPTDKSSSKKFVLSVAWSP-DGRRIACGSMDGTISVFDVTRA  190 (315)
Q Consensus       113 ~~~~-~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~s~dg~i~i~d~~~~  190 (315)
                      +... -+++++.||.|..|+++................ ..........++++.|.+ +-+.|+.|+.+|.|.--.....
T Consensus       302 ~~~~~~f~s~ssDG~i~~W~~~~l~~P~e~~~~~~~~~-~~~~~~~~~~~t~~~F~~~~p~~FiVGTe~G~v~~~~r~g~  380 (555)
T KOG1587|consen  302 NEHNTEFFSLSSDGSICSWDTDMLSLPVEGLLLESKKH-KGQQSSKAVGATSLKFEPTDPNHFIVGTEEGKVYKGCRKGY  380 (555)
T ss_pred             cCCCCceEEEecCCcEeeeeccccccchhhcccccccc-cccccccccceeeEeeccCCCceEEEEcCCcEEEEEeccCC
Confidence            4332 245677799999998875333111110000000 001112233478999988 4568899999999888443221


Q ss_pred             e--------eeeeecCCccceEEEEEcCCCCcEEEEEeCCCeEEEEeCC-CCeeEEEeecccccEEEEEEcCCC-CeEEE
Q 021247          191 K--------FLHHLEGHFMPVRSLVYSPVDPRVLFSASDDTHVHMYDAE-GKSLVTAMSGHASWVLSVDASPDG-AAITT  260 (315)
Q Consensus       191 ~--------~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~-~~~~~~~~~~~~~~i~~~~~~~~~-~~l~s  260 (315)
                      +        .......|.++|+++.++|.....+++++ |-++++|... ....+..+..+...+++++|||.. ..+++
T Consensus       381 ~~~~~~~~~~~~~~~~h~g~v~~v~~nPF~~k~fls~g-DW~vriWs~~~~~~Pl~~~~~~~~~v~~vaWSptrpavF~~  459 (555)
T KOG1587|consen  381 TPAPEVSYKGHSTFITHIGPVYAVSRNPFYPKNFLSVG-DWTVRIWSEDVIASPLLSLDSSPDYVTDVAWSPTRPAVFAT  459 (555)
T ss_pred             cccccccccccccccccCcceEeeecCCCccceeeeec-cceeEeccccCCCCcchhhhhccceeeeeEEcCcCceEEEE
Confidence            1        12345568899999999998888888888 8899999987 556666677778889999999964 57899


Q ss_pred             EeCCCcEEEEecCcc--ceehcccccccceEEEEEeeCCCEEEEEeCCCcEEEeecC
Q 021247          261 GSSDRTVKLWDLNMR--AAMQSMTNHTDQVWGVSFRPLGGRVVSVSDDKSISLYEYS  315 (315)
Q Consensus       261 ~~~d~~i~iwd~~~~--~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~i~i~~~~  315 (315)
                      +..||.+.+||+...  ++..+..-+....+.+.|+++|+.|+.|.+.|++.+|+++
T Consensus       460 ~d~~G~l~iWDLl~~~~~Pv~s~~~~~~~l~~~~~s~~g~~lavGd~~G~~~~~~l~  516 (555)
T KOG1587|consen  460 VDGDGNLDIWDLLQDDEEPVLSQKVCSPALTRVRWSPNGKLLAVGDANGTTHILKLS  516 (555)
T ss_pred             EcCCCceehhhhhccccCCcccccccccccceeecCCCCcEEEEecCCCcEEEEEcC
Confidence            999999999999753  4455555556677888999999999999999999999873

>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]

Probab=99.89  E-value=9.4e-21  Score=151.48  Aligned_cols=282  Identities=20%  Similarity=0.309  Sum_probs=197.6

Q ss_pred             ccceEEEEEeecCCCCCcEEEEeeCCCcEEEEcCCCCc-------c--eeeccccccceEEEEeCCCCCEEEEeeCCCeE
Q 021247           14 EESVWAVTWVPATETRPALLLTGSLDETVKLWRPDDMQ-------L--ERTNTGHCLGVVSVAAHPSGIIAASASLDSFV   84 (315)
Q Consensus        14 ~~~v~~v~~~~~~~~~~~~l~sgs~d~~v~~w~~~~~~-------~--~~~~~~h~~~v~~~~~~~~g~~l~s~~~d~~i   84 (315)
                      .++|+.+.|.+...   +.++||+.|..|++|......       .  ...+..|..+|+.+.|+|+|.+++||+.+|.+
T Consensus        13 ~~pv~s~dfq~n~~---~~laT~G~D~~iriW~v~r~~~~~~~~~V~y~s~Ls~H~~aVN~vRf~p~gelLASg~D~g~v   89 (434)
T KOG1009|consen   13 HEPVYSVDFQKNSL---NKLATAGGDKDIRIWKVNRSEPGGGDMKVEYLSSLSRHTRAVNVVRFSPDGELLASGGDGGEV   89 (434)
T ss_pred             CCceEEEEeccCcc---cceecccCccceeeeeeeecCCCCCceeEEEeecccCCcceeEEEEEcCCcCeeeecCCCceE
Confidence            36899999987554   379999999999999754221       1  22457899999999999999999999999999


Q ss_pred             EEEECC--------C-----C---ceeEEeeCCcccEEEEEECCCCCeEEEEecCCCeEEEEecCCcceeeeecCCCCCC
Q 021247           85 RVFDVD--------T-----N---ASIATLEASPSEVWQMQFDPKGTTLAVAGGGSASVKLWDTATWNLIATLSIPRPEG  148 (315)
Q Consensus        85 ~~w~~~--------~-----~---~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~  148 (315)
                      .+|...        +     .   .....+..|...+..++|.|++.+ +++++.|..+++||+..++.....       
T Consensus        90 ~lWk~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~d~~~-l~s~s~dns~~l~Dv~~G~l~~~~-------  161 (434)
T KOG1009|consen   90 FLWKQGDVRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSPDSNF-LVSGSVDNSVRLWDVHAGQLLAIL-------  161 (434)
T ss_pred             EEEEecCcCCccccchhhhCccceEEEEEecccccchhhhhccCCCce-eeeeeccceEEEEEeccceeEeec-------
Confidence            999876        2     1   123355678889999999999885 467889999999999998877655       


Q ss_pred             CCCCccCCCCcceEEEEECCCCCEEEEecCCCcEEEEEcccceeeeeec--------C-----------Cc----cceEE
Q 021247          149 LKPTDKSSSKKFVLSVAWSPDGRRIACGSMDGTISVFDVTRAKFLHHLE--------G-----------HF----MPVRS  205 (315)
Q Consensus       149 ~~~~~~~~~~~~i~~~~~~~~~~~l~~~s~dg~i~i~d~~~~~~~~~~~--------~-----------~~----~~v~~  205 (315)
                            ..|..++..++|.|.++++++-+.|...+.+++...+.+..+.        .           |.    .-.+.
T Consensus       162 ------~dh~~yvqgvawDpl~qyv~s~s~dr~~~~~~~~~~~~~~~~~~~~m~~~~~~~~e~~s~rLfhDeTlksFFrR  235 (434)
T KOG1009|consen  162 ------DDHEHYVQGVAWDPLNQYVASKSSDRHPEGFSAKLKQVIKRHGLDIMPAKAFNEREGKSTRLFHDETLKSFFRR  235 (434)
T ss_pred             ------cccccccceeecchhhhhhhhhccCcccceeeeeeeeeeeeeeeeEeeecccCCCCcceeeeeecCchhhhhhh
Confidence                  3466678899999999999998888877777664333222111        0           10    12345


Q ss_pred             EEEcCCCCcEEEEEeC----C-----CeEEEEeCCCC-eeEEEeecccccEEEEEEcC------------------CCCe
Q 021247          206 LVYSPVDPRVLFSASD----D-----THVHMYDAEGK-SLVTAMSGHASWVLSVDASP------------------DGAA  257 (315)
Q Consensus       206 ~~~~~~~~~~l~s~~~----d-----~~i~~wd~~~~-~~~~~~~~~~~~i~~~~~~~------------------~~~~  257 (315)
                      +.|+| ++.+|++...    .     +..++|+.+.. .....+.+-..+...+.++|                  -+..
T Consensus       236 lsfTP-dG~llvtPag~~~~g~~~~~n~tYvfsrk~l~rP~~~lp~~~k~~lavr~~pVy~elrp~~~~~~~~~lpyrlv  314 (434)
T KOG1009|consen  236 LSFTP-DGSLLVTPAGLFKVGGGVFRNTSYVFSRKDLKRPAARLPSPKKPALAVRFSPVYYELRPLSSEKFLFVLPYRLV  314 (434)
T ss_pred             cccCC-CCcEEEcccceeeeCCceeeceeEeeccccccCceeecCCCCcceEEEEeeeeEEEeccccccccccccccceE
Confidence            57777 5566665432    1     23455554321 12222333333333444433                  2234


Q ss_pred             EEEEeCCCcEEEEecCccceehccc-ccccceEEEEEeeCCCEEEEEeCCCcEEEeec
Q 021247          258 ITTGSSDRTVKLWDLNMRAAMQSMT-NHTDQVWGVSFRPLGGRVVSVSDDKSISLYEY  314 (315)
Q Consensus       258 l~s~~~d~~i~iwd~~~~~~~~~~~-~~~~~v~~~~~s~~~~~l~s~~~d~~i~i~~~  314 (315)
                      ++.++ ...|.+||..+-+++.... -|-..++.++|+++|..|+..|.||.+.+-.+
T Consensus       315 faiAt-~~svyvydtq~~~P~~~v~nihy~~iTDiaws~dg~~l~vSS~DGyCS~vtf  371 (434)
T KOG1009|consen  315 FAIAT-KNSVYVYDTQTLEPLAVVDNIHYSAITDIAWSDDGSVLLVSSTDGFCSLVTF  371 (434)
T ss_pred             EEEee-cceEEEeccccccceEEEeeeeeeeecceeecCCCcEEEEeccCCceEEEEE
Confidence            45555 5579999999887776553 48889999999999999999999998776443

>PRK11028 6-phosphogluconolactonase; Provisional

Probab=99.89  E-value=1.8e-19  Score=151.77  Aligned_cols=267  Identities=15%  Similarity=0.211  Sum_probs=174.2

Q ss_pred             EEEeeCCCcEEEEcCCC-Cc--ceeeccccccceEEEEeCCCCCEEEEe-eCCCeEEEEECCC-Cce--eEEeeCCcccE
Q 021247           33 LLTGSLDETVKLWRPDD-MQ--LERTNTGHCLGVVSVAAHPSGIIAASA-SLDSFVRVFDVDT-NAS--IATLEASPSEV  105 (315)
Q Consensus        33 l~sgs~d~~v~~w~~~~-~~--~~~~~~~h~~~v~~~~~~~~g~~l~s~-~~d~~i~~w~~~~-~~~--~~~~~~~~~~v  105 (315)
                      .++.+.|+.|++|+.++ .+  +.+.+. +......+.++|++++|+++ ..++.|.+|++.. +..  +.... .....
T Consensus         5 y~~~~~~~~I~~~~~~~~g~l~~~~~~~-~~~~~~~l~~spd~~~lyv~~~~~~~i~~~~~~~~g~l~~~~~~~-~~~~p   82 (330)
T PRK11028          5 YIASPESQQIHVWNLNHEGALTLLQVVD-VPGQVQPMVISPDKRHLYVGVRPEFRVLSYRIADDGALTFAAESP-LPGSP   82 (330)
T ss_pred             EEEcCCCCCEEEEEECCCCceeeeeEEe-cCCCCccEEECCCCCEEEEEECCCCcEEEEEECCCCceEEeeeec-CCCCc
Confidence            44457799999999863 33  223332 33557788999999987655 4578899999973 322  22222 22345


Q ss_pred             EEEEECCCCCeEEEEecCCCeEEEEecCCccee-eeecCCCCCCCCCCccCCCCcceEEEEECCCCCEEE-EecCCCcEE
Q 021247          106 WQMQFDPKGTTLAVAGGGSASVKLWDTATWNLI-ATLSIPRPEGLKPTDKSSSKKFVLSVAWSPDGRRIA-CGSMDGTIS  183 (315)
Q Consensus       106 ~~~~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~-~~s~dg~i~  183 (315)
                      ..+.++|+++.++++...++.|.+||+.....+ .....           .........++++|++++++ +...++.|.
T Consensus        83 ~~i~~~~~g~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~-----------~~~~~~~~~~~~~p~g~~l~v~~~~~~~v~  151 (330)
T PRK11028         83 THISTDHQGRFLFSASYNANCVSVSPLDKDGIPVAPIQI-----------IEGLEGCHSANIDPDNRTLWVPCLKEDRIR  151 (330)
T ss_pred             eEEEECCCCCEEEEEEcCCCeEEEEEECCCCCCCCceee-----------ccCCCcccEeEeCCCCCEEEEeeCCCCEEE
Confidence            689999999988888777899999998642211 11100           00112245788999999885 455679999


Q ss_pred             EEEcccceeee-------eecCCccceEEEEEcCCCCcEEEEEe-CCCeEEEEeCCC--Ce--eEEEeec------cccc
Q 021247          184 VFDVTRAKFLH-------HLEGHFMPVRSLVYSPVDPRVLFSAS-DDTHVHMYDAEG--KS--LVTAMSG------HASW  245 (315)
Q Consensus       184 i~d~~~~~~~~-------~~~~~~~~v~~~~~~~~~~~~l~s~~-~d~~i~~wd~~~--~~--~~~~~~~------~~~~  245 (315)
                      +||+.+...+.       .... ....+.+.|+| ++++++++. .++.|.+|+++.  ++  .+..+..      +..+
T Consensus       152 v~d~~~~g~l~~~~~~~~~~~~-g~~p~~~~~~p-dg~~lyv~~~~~~~v~v~~~~~~~~~~~~~~~~~~~p~~~~~~~~  229 (330)
T PRK11028        152 LFTLSDDGHLVAQEPAEVTTVE-GAGPRHMVFHP-NQQYAYCVNELNSSVDVWQLKDPHGEIECVQTLDMMPADFSDTRW  229 (330)
T ss_pred             EEEECCCCcccccCCCceecCC-CCCCceEEECC-CCCEEEEEecCCCEEEEEEEeCCCCCEEEEEEEecCCCcCCCCcc
Confidence            99997632221       1111 23457889998 455665554 489999999863  22  2333322      1223


Q ss_pred             EEEEEEcCCCCeEEEEeC-CCcEEEEecCccceehccccc---ccceEEEEEeeCCCEEEEEeC-CCcEEEeec
Q 021247          246 VLSVDASPDGAAITTGSS-DRTVKLWDLNMRAAMQSMTNH---TDQVWGVSFRPLGGRVVSVSD-DKSISLYEY  314 (315)
Q Consensus       246 i~~~~~~~~~~~l~s~~~-d~~i~iwd~~~~~~~~~~~~~---~~~v~~~~~s~~~~~l~s~~~-d~~i~i~~~  314 (315)
                      ...+.++|++++++++.. ++.|.+|+++.......+..+   ....+.+.++|+|++|+++.. +++|.+|++
T Consensus       230 ~~~i~~~pdg~~lyv~~~~~~~I~v~~i~~~~~~~~~~~~~~~~~~p~~~~~~~dg~~l~va~~~~~~v~v~~~  303 (330)
T PRK11028        230 AADIHITPDGRHLYACDRTASLISVFSVSEDGSVLSFEGHQPTETQPRGFNIDHSGKYLIAAGQKSHHISVYEI  303 (330)
T ss_pred             ceeEEECCCCCEEEEecCCCCeEEEEEEeCCCCeEEEeEEEeccccCCceEECCCCCEEEEEEccCCcEEEEEE
Confidence            446889999999888754 788999998653211111122   124568899999999987665 899999976

>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]

Probab=99.88  E-value=7e-22  Score=163.98  Aligned_cols=259  Identities=22%  Similarity=0.399  Sum_probs=186.6

Q ss_pred             hhhccccceEEEEEeecCCCCCcEEEEeeCCCcEEEEcCCC--------CcceeeccccccceEEEEeCCCCCEEEEeeC
Q 021247            9 VENAHEESVWAVTWVPATETRPALLLTGSLDETVKLWRPDD--------MQLERTNTGHCLGVVSVAAHPSGIIAASASL   80 (315)
Q Consensus         9 ~~~~h~~~v~~v~~~~~~~~~~~~l~sgs~d~~v~~w~~~~--------~~~~~~~~~h~~~v~~~~~~~~g~~l~s~~~   80 (315)
                      .++.|.+.|..++|.|...    .|++|+.||++++|+++.        .+....+.+|.++|.|+.+.+.+..+.+|+.
T Consensus       289 tl~s~~d~ir~l~~~~sep----~lit~sed~~lk~WnLqk~~~s~~~~~epi~tfraH~gPVl~v~v~~n~~~~ysgg~  364 (577)
T KOG0642|consen  289 TLRSHDDCIRALAFHPSEP----VLITASEDGTLKLWNLQKAKKSAEKDVEPILTFRAHEGPVLCVVVPSNGEHCYSGGI  364 (577)
T ss_pred             eeecchhhhhhhhcCCCCC----eEEEeccccchhhhhhcccCCccccceeeeEEEecccCceEEEEecCCceEEEeecc
Confidence            5678889999999988665    699999999999999832        1224467899999999999999999999999


Q ss_pred             CCeEEEEECCCCc----------eeEEeeCCcccEEEEEECCCCCeEEEEecCCCeEEEEecCCcceeeeecCCCCCCCC
Q 021247           81 DSFVRVFDVDTNA----------SIATLEASPSEVWQMQFDPKGTTLAVAGGGSASVKLWDTATWNLIATLSIPRPEGLK  150 (315)
Q Consensus        81 d~~i~~w~~~~~~----------~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~  150 (315)
                      ||+|+.|++..+.          ...++.+|.+.+|.+++++.... +++++.||++++|+...... .++..+...   
T Consensus       365 Dg~I~~w~~p~n~dp~ds~dp~vl~~~l~Ghtdavw~l~~s~~~~~-Llscs~DgTvr~w~~~~~~~-~~f~~~~e~---  439 (577)
T KOG0642|consen  365 DGTIRCWNLPPNQDPDDSYDPSVLSGTLLGHTDAVWLLALSSTKDR-LLSCSSDGTVRLWEPTEESP-CTFGEPKEH---  439 (577)
T ss_pred             CceeeeeccCCCCCcccccCcchhccceeccccceeeeeecccccc-eeeecCCceEEeeccCCcCc-cccCCcccc---
Confidence            9999999765321          22456789999999999987654 57889999999998765333 222222111   


Q ss_pred             CCccCCCCcceEEEEECCCC-CEEEEecCCCcEEEEEcccceeeeeecC-------CccceEEEEEcCCCCcEEEEEeCC
Q 021247          151 PTDKSSSKKFVLSVAWSPDG-RRIACGSMDGTISVFDVTRAKFLHHLEG-------HFMPVRSLVYSPVDPRVLFSASDD  222 (315)
Q Consensus       151 ~~~~~~~~~~i~~~~~~~~~-~~l~~~s~dg~i~i~d~~~~~~~~~~~~-------~~~~v~~~~~~~~~~~~l~s~~~d  222 (315)
                              .+..++.+-... ...++...-+.--+++.........+..       ....+.-+.++| +..+.+++..|
T Consensus       440 --------g~Plsvd~~ss~~a~~~~s~~~~~~~~~~~ev~s~~~~~~s~~~~~~~~~~~in~vVs~~-~~~~~~~~hed  510 (577)
T KOG0642|consen  440 --------GYPLSVDRTSSRPAHSLASFRFGYTSIDDMEVVSDLLIFESSASPGPRRYPQINKVVSHP-TADITFTAHED  510 (577)
T ss_pred             --------CCcceEeeccchhHhhhhhcccccccchhhhhhhheeeccccCCCcccccCccceEEecC-CCCeeEecccC
Confidence                    112333332211 1122222222233333333322222211       112355667777 45789999999


Q ss_pred             CeEEEEeCCCCeeEEEeecccccEEEEEEcCCCCeEEEEeCCCcEEEEecCccceehcccccc
Q 021247          223 THVHMYDAEGKSLVTAMSGHASWVLSVDASPDGAAITTGSSDRTVKLWDLNMRAAMQSMTNHT  285 (315)
Q Consensus       223 ~~i~~wd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~  285 (315)
                      ++|+++|...+.++..+..|...++++++.|+|.+|++++.|+.|++|.+...........|.
T Consensus       511 ~~Ir~~dn~~~~~l~s~~a~~~svtslai~~ng~~l~s~s~d~sv~l~kld~k~~~~es~~~r  573 (577)
T KOG0642|consen  511 RSIRFFDNKTGKILHSMVAHKDSVTSLAIDPNGPYLMSGSHDGSVRLWKLDVKTCVLESTAHR  573 (577)
T ss_pred             CceecccccccccchheeeccceecceeecCCCceEEeecCCceeehhhccchheeecccccc
Confidence            999999999999999999999999999999999999999999999999998776666655554

>COG2319 FOG: WD40 repeat [General function prediction only]

Probab=99.88  E-value=1.3e-18  Score=150.76  Aligned_cols=285  Identities=36%  Similarity=0.583  Sum_probs=220.8

Q ss_pred             hhhhccccceEEEEEeecCCCCCcEEEEeeC-CCcEEEEcCCCCcceeeccccccceEEEEeCCCCC-EEEEeeCCCeEE
Q 021247            8 SVENAHEESVWAVTWVPATETRPALLLTGSL-DETVKLWRPDDMQLERTNTGHCLGVVSVAAHPSGI-IAASASLDSFVR   85 (315)
Q Consensus         8 ~~~~~h~~~v~~v~~~~~~~~~~~~l~sgs~-d~~v~~w~~~~~~~~~~~~~h~~~v~~~~~~~~g~-~l~s~~~d~~i~   85 (315)
                      .....|...|.+++|+|...    .+++++. |+.+++|+.........+.+|...+.++.++|++. ++++++.|+.++
T Consensus       149 ~~~~~~~~~v~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~  224 (466)
T COG2319         149 RTLEGHSESVTSLAFSPDGK----LLASGSSLDGTIKLWDLRTGKPLSTLAGHTDPVSSLAFSPDGGLLIASGSSDGTIR  224 (466)
T ss_pred             EEEecCcccEEEEEECCCCC----EEEecCCCCCceEEEEcCCCceEEeeccCCCceEEEEEcCCcceEEEEecCCCcEE
Confidence            34568999999999999875    5777775 99999999987777777888999999999999997 666669999999


Q ss_pred             EEECCCCceeE-EeeCCcccEEEEEECCCCCeEEEEecCCCeEEEEecCCcce-eeeecCCCCCCCCCCccCCCCcceEE
Q 021247           86 VFDVDTNASIA-TLEASPSEVWQMQFDPKGTTLAVAGGGSASVKLWDTATWNL-IATLSIPRPEGLKPTDKSSSKKFVLS  163 (315)
Q Consensus        86 ~w~~~~~~~~~-~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~~d~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~i~~  163 (315)
                      +||...+..+. .+..+.... ...|+|++. ++++++.++.+++||.+.... +..+             ..+...+.+
T Consensus       225 ~wd~~~~~~~~~~~~~~~~~~-~~~~~~~~~-~~~~~~~d~~~~~~~~~~~~~~~~~~-------------~~~~~~v~~  289 (466)
T COG2319         225 LWDLSTGKLLRSTLSGHSDSV-VSSFSPDGS-LLASGSSDGTIRLWDLRSSSSLLRTL-------------SGHSSSVLS  289 (466)
T ss_pred             EEECCCCcEEeeecCCCCcce-eEeECCCCC-EEEEecCCCcEEEeeecCCCcEEEEE-------------ecCCccEEE
Confidence            99988777776 577776665 448999985 445888999999999986554 2222             123455889


Q ss_pred             EEECCCCCEEEEecCCCcEEEEEcccceeeeeec--CCccceEEEEEcCCCCcEEEEE-eCCCeEEEEeCCCCeeEEEee
Q 021247          164 VAWSPDGRRIACGSMDGTISVFDVTRAKFLHHLE--GHFMPVRSLVYSPVDPRVLFSA-SDDTHVHMYDAEGKSLVTAMS  240 (315)
Q Consensus       164 ~~~~~~~~~l~~~s~dg~i~i~d~~~~~~~~~~~--~~~~~v~~~~~~~~~~~~l~s~-~~d~~i~~wd~~~~~~~~~~~  240 (315)
                      +.|+|++..+++++.|+.+.+||..+........  .|...+..+.| +.+...++.+ ..|+.+.+|+...........
T Consensus       290 ~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~  368 (466)
T COG2319         290 VAFSPDGKLLASGSSDGTVRLWDLETGKLLSSLTLKGHEGPVSSLSF-SPDGSLLVSGGSDDGTIRLWDLRTGKPLKTLE  368 (466)
T ss_pred             EEECCCCCEEEEeeCCCcEEEEEcCCCceEEEeeecccCCceEEEEE-CCCCCEEEEeecCCCcEEeeecCCCceeEEec
Confidence            9999988888888888889999998877666555  77778899999 5342444444 678899999988766222222


Q ss_pred             cccccEEEEEEcCCCCeEEE-EeCCCcEEEEecCccceehcccccccceEEEEEeeCCCEEEEEeCCCcEEEeec
Q 021247          241 GHASWVLSVDASPDGAAITT-GSSDRTVKLWDLNMRAAMQSMTNHTDQVWGVSFRPLGGRVVSVSDDKSISLYEY  314 (315)
Q Consensus       241 ~~~~~i~~~~~~~~~~~l~s-~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~i~i~~~  314 (315)
                      ... .+..+.+.+ ...+.. +..++.+.+|+............+...+....+++++..+++++.++++++|+.
T Consensus       369 ~~~-~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  441 (466)
T COG2319         369 GHS-NVLSVSFSP-DGRVVSSGSTDGTVRLWDLSTGSLLRNLDGHTSRVTSLDFSPDGKSLASGSSDNTIRLWDL  441 (466)
T ss_pred             CCc-eEEEEEECC-CCCEEEEecCCCceEEEecccCeeeeeccCCCCcEEEEEECCCCcEEEEecCCCcEEEEec
Confidence            222 278888888 544444 688999999999987766555443368889999999999999999999999985

>KOG1188 consensus WD40 repeat protein [General function prediction only]

Probab=99.88  E-value=6.5e-21  Score=149.31  Aligned_cols=270  Identities=17%  Similarity=0.239  Sum_probs=191.0

Q ss_pred             cEEEEeeCCCcEEEEcCCCCcceeeccccccceEEEEeCC--CCCEEEEeeCCCeEEEEECCCCceeEEe--eCCc-ccE
Q 021247           31 ALLLTGSLDETVKLWRPDDMQLERTNTGHCLGVVSVAAHP--SGIIAASASLDSFVRVFDVDTNASIATL--EASP-SEV  105 (315)
Q Consensus        31 ~~l~sgs~d~~v~~w~~~~~~~~~~~~~h~~~v~~~~~~~--~g~~l~s~~~d~~i~~w~~~~~~~~~~~--~~~~-~~v  105 (315)
                      ..+|++-..|+|++||..+.+....++++...++.+.|..  ....+.+++.||+||+||++.......+  ..++ .+-
T Consensus        41 ~~vav~lSngsv~lyd~~tg~~l~~fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~~~~~~~~~f  120 (376)
T KOG1188|consen   41 TAVAVSLSNGSVRLYDKGTGQLLEEFKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESARISWTQQSGTPF  120 (376)
T ss_pred             eeEEEEecCCeEEEEeccchhhhheecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhhhheeccCCCCCcc
Confidence            4688899999999999999988888999888888888866  5678899999999999999987654433  3333 455


Q ss_pred             EEEEECCCCCeEEEEec----CCCeEEEEecCCcce-eeeecCCCCCCCCCCccCCCCcceEEEEECCC-CCEEEEecCC
Q 021247          106 WQMQFDPKGTTLAVAGG----GSASVKLWDTATWNL-IATLSIPRPEGLKPTDKSSSKKFVLSVAWSPD-GRRIACGSMD  179 (315)
Q Consensus       106 ~~~~~~~~~~~~~~~~~----~d~~i~~~d~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-~~~l~~~s~d  179 (315)
                      .+++.+..++ ++++|.    .+..+.+||.|..+. +..+            ...|.+-|++++|+|. -+.|++||.|
T Consensus       121 ~~ld~nck~~-ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~------------~eSH~DDVT~lrFHP~~pnlLlSGSvD  187 (376)
T KOG1188|consen  121 ICLDLNCKKN-IIACGTELTRSDASVVLWDVRSEQQLLRQL------------NESHNDDVTQLRFHPSDPNLLLSGSVD  187 (376)
T ss_pred             eEeeccCcCC-eEEeccccccCceEEEEEEeccccchhhhh------------hhhccCcceeEEecCCCCCeEEeeccc
Confidence            6666655555 444443    467899999987554 3222            1245666999999995 5688999999


Q ss_pred             CcEEEEEcccce---eeeeecCCccceEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCeeEEEeec------------ccc
Q 021247          180 GTISVFDVTRAK---FLHHLEGHFMPVRSLVYSPVDPRVLFSASDDTHVHMYDAEGKSLVTAMSG------------HAS  244 (315)
Q Consensus       180 g~i~i~d~~~~~---~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~------------~~~  244 (315)
                      |.|.+||+....   .+...-.|...|..+.|....=..+.+-+......+|+++.+.....+..            -..
T Consensus       188 GLvnlfD~~~d~EeDaL~~viN~~sSI~~igw~~~~ykrI~clTH~Etf~~~ele~~~~~~~~~~~~~~~~d~r~~~~~d  267 (376)
T KOG1188|consen  188 GLVNLFDTKKDNEEDALLHVINHGSSIHLIGWLSKKYKRIMCLTHMETFAIYELEDGSEETWLENPDVSADDLRKEDNCD  267 (376)
T ss_pred             ceEEeeecCCCcchhhHHHhhcccceeeeeeeecCCcceEEEEEccCceeEEEccCCChhhcccCccchhhhHHhhhhhh
Confidence            999999986442   23334456778999999864434688889999999999987653322211            112


Q ss_pred             cEEEEEEcCCCCeEEEEeC-CCcEEEEecCc---cce---ehcccc-cccceEEEEEeeCCCEEEEEeCCCcEEEee
Q 021247          245 WVLSVDASPDGAAITTGSS-DRTVKLWDLNM---RAA---MQSMTN-HTDQVWGVSFRPLGGRVVSVSDDKSISLYE  313 (315)
Q Consensus       245 ~i~~~~~~~~~~~l~s~~~-d~~i~iwd~~~---~~~---~~~~~~-~~~~v~~~~~s~~~~~l~s~~~d~~i~i~~  313 (315)
                      .+...-...+...++.++. -++..++-+..   +..   ...+.+ |.+-|.++.|.-.+..+.+||.||.+.+|.
T Consensus       268 Y~I~~~~~~~~~~~~l~g~~~n~~~~~~~~~~~s~~~~~~~a~l~g~~~eiVR~i~~~~~~~~l~TGGEDG~l~~Wk  344 (376)
T KOG1188|consen  268 YVINEHSPGDKDTCALAGTDSNKGTIFPLVDTSSGSLLTEPAILQGGHEEIVRDILFDVKNDVLYTGGEDGLLQAWK  344 (376)
T ss_pred             heeecccCCCcceEEEeccccCceeEEEeeecccccccCccccccCCcHHHHHHHhhhcccceeeccCCCceEEEEe
Confidence            2222222224556666655 56677775542   222   222334 666788888888888999999999999997

>KOG1273 consensus WD40 repeat protein [General function prediction only]

Probab=99.88  E-value=3.5e-20  Score=143.87  Aligned_cols=235  Identities=18%  Similarity=0.264  Sum_probs=175.3

Q ss_pred             eEEEEeCCCCCEEEEeeCCCeEEEEECCCCceeEEeeCCcccEEEEEECCCCCeEEEEecCCCeEEEEecCCcceeeeec
Q 021247           63 VVSVAAHPSGIIAASASLDSFVRVFDVDTNASIATLEASPSEVWQMQFDPKGTTLAVAGGGSASVKLWDTATWNLIATLS  142 (315)
Q Consensus        63 v~~~~~~~~g~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~  142 (315)
                      ..++.|++.|.+++.|..||.|-+||+.+...-+.+..|-.+|.+++|+++|+.+ ++++.|..|.+||+..+.++..+.
T Consensus        26 a~~~~Fs~~G~~lAvGc~nG~vvI~D~~T~~iar~lsaH~~pi~sl~WS~dgr~L-ltsS~D~si~lwDl~~gs~l~rir  104 (405)
T KOG1273|consen   26 AECCQFSRWGDYLAVGCANGRVVIYDFDTFRIARMLSAHVRPITSLCWSRDGRKL-LTSSRDWSIKLWDLLKGSPLKRIR  104 (405)
T ss_pred             cceEEeccCcceeeeeccCCcEEEEEccccchhhhhhccccceeEEEecCCCCEe-eeecCCceeEEEeccCCCceeEEE
Confidence            6899999999999999999999999999988778888999999999999999865 678899999999999998888776


Q ss_pred             CCCCCCCCCCccCCCCcceEEEEECCCC-CEEEEecCCCcEEEEEcccce--eeeee-cCCc-cceEEEEEcCCCCcEEE
Q 021247          143 IPRPEGLKPTDKSSSKKFVLSVAWSPDG-RRIACGSMDGTISVFDVTRAK--FLHHL-EGHF-MPVRSLVYSPVDPRVLF  217 (315)
Q Consensus       143 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~l~~~s~dg~i~i~d~~~~~--~~~~~-~~~~-~~v~~~~~~~~~~~~l~  217 (315)
                      ++.+              |..+.|+|.. +.+++.-.+..-.+.++...+  .+..- .+.. .......|.+ .+++++
T Consensus       105 f~sp--------------v~~~q~hp~k~n~~va~~~~~sp~vi~~s~~~h~~Lp~d~d~dln~sas~~~fdr-~g~yIi  169 (405)
T KOG1273|consen  105 FDSP--------------VWGAQWHPRKRNKCVATIMEESPVVIDFSDPKHSVLPKDDDGDLNSSASHGVFDR-RGKYII  169 (405)
T ss_pred             ccCc--------------cceeeeccccCCeEEEEEecCCcEEEEecCCceeeccCCCccccccccccccccC-CCCEEE
Confidence            6544              8889999954 344444444445555554322  11110 0111 1112234555 788999


Q ss_pred             EEeCCCeEEEEeCCCCeeEEEeeccc-ccEEEEEEcCCCCeEEEEeCCCcEEEEecCc----c---ce--ehc---cccc
Q 021247          218 SASDDTHVHMYDAEGKSLVTAMSGHA-SWVLSVDASPDGAAITTGSSDRTVKLWDLNM----R---AA--MQS---MTNH  284 (315)
Q Consensus       218 s~~~d~~i~~wd~~~~~~~~~~~~~~-~~i~~~~~~~~~~~l~s~~~d~~i~iwd~~~----~---~~--~~~---~~~~  284 (315)
                      +|...|.+.+||..+.+++..+.-.. ..|..+.++..|+.|+..+.|+.||.+++..    +   ++  .+.   +-+ 
T Consensus       170 tGtsKGkllv~~a~t~e~vas~rits~~~IK~I~~s~~g~~liiNtsDRvIR~ye~~di~~~~r~~e~e~~~K~qDvVN-  248 (405)
T KOG1273|consen  170 TGTSKGKLLVYDAETLECVASFRITSVQAIKQIIVSRKGRFLIINTSDRVIRTYEISDIDDEGRDGEVEPEHKLQDVVN-  248 (405)
T ss_pred             EecCcceEEEEecchheeeeeeeechheeeeEEEEeccCcEEEEecCCceEEEEehhhhcccCccCCcChhHHHHHHHh-
Confidence            99999999999999988887766544 6788999999999999999999999998762    1   11  111   111 


Q ss_pred             ccceEEEEEeeCCCEEEEEeCC-CcEEEeec
Q 021247          285 TDQVWGVSFRPLGGRVVSVSDD-KSISLYEY  314 (315)
Q Consensus       285 ~~~v~~~~~s~~~~~l~s~~~d-~~i~i~~~  314 (315)
                      .-+=.++.||.+|.|+++++.- ..++||.-
T Consensus       249 k~~Wk~ccfs~dgeYv~a~s~~aHaLYIWE~  279 (405)
T KOG1273|consen  249 KLQWKKCCFSGDGEYVCAGSARAHALYIWEK  279 (405)
T ss_pred             hhhhhheeecCCccEEEeccccceeEEEEec
Confidence            1223478999999999776653 68888863

>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]

Probab=99.87  E-value=2.9e-21  Score=160.33  Aligned_cols=254  Identities=20%  Similarity=0.234  Sum_probs=187.2

Q ss_pred             ccccccceEEEEeCCCCCEEEEeeCCCeEEEEECCCC--------ceeEEeeCCcccEEEEEECCCCCeEEEEecCCCeE
Q 021247           56 NTGHCLGVVSVAAHPSGIIAASASLDSFVRVFDVDTN--------ASIATLEASPSEVWQMQFDPKGTTLAVAGGGSASV  127 (315)
Q Consensus        56 ~~~h~~~v~~~~~~~~g~~l~s~~~d~~i~~w~~~~~--------~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i  127 (315)
                      +..|...++.+.|+|....+++++.|+++++|+++..        +.+.++..|.++|.++++.+.+..+ ++|+-||+|
T Consensus       290 l~s~~d~ir~l~~~~sep~lit~sed~~lk~WnLqk~~~s~~~~~epi~tfraH~gPVl~v~v~~n~~~~-ysgg~Dg~I  368 (577)
T KOG0642|consen  290 LRSHDDCIRALAFHPSEPVLITASEDGTLKLWNLQKAKKSAEKDVEPILTFRAHEGPVLCVVVPSNGEHC-YSGGIDGTI  368 (577)
T ss_pred             eecchhhhhhhhcCCCCCeEEEeccccchhhhhhcccCCccccceeeeEEEecccCceEEEEecCCceEE-EeeccCcee
Confidence            4568889999999999999999999999999999321        3567889999999999999888754 789999999


Q ss_pred             EEEecCCcceeeeecCCCCCCCCCCccCCCCcceEEEEECCCCCEEEEecCCCcEEEEEccccee--eeeecCCccceEE
Q 021247          128 KLWDTATWNLIATLSIPRPEGLKPTDKSSSKKFVLSVAWSPDGRRIACGSMDGTISVFDVTRAKF--LHHLEGHFMPVRS  205 (315)
Q Consensus       128 ~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~s~dg~i~i~d~~~~~~--~~~~~~~~~~v~~  205 (315)
                      +.|++.. +.-. +....+ ........+|.+.+..+++++....|++++.||+++.|+......  ...-+.|. ...+
T Consensus       369 ~~w~~p~-n~dp-~ds~dp-~vl~~~l~Ghtdavw~l~~s~~~~~Llscs~DgTvr~w~~~~~~~~~f~~~~e~g-~Pls  444 (577)
T KOG0642|consen  369 RCWNLPP-NQDP-DDSYDP-SVLSGTLLGHTDAVWLLALSSTKDRLLSCSSDGTVRLWEPTEESPCTFGEPKEHG-YPLS  444 (577)
T ss_pred             eeeccCC-CCCc-ccccCc-chhccceeccccceeeeeecccccceeeecCCceEEeeccCCcCccccCCccccC-Ccce
Confidence            9997642 1100 000000 000112245677788999999999999999999999999865554  11122222 3355


Q ss_pred             EEEcCCCCcEEEEEeCCCeEEEEeCCCCeeEEEeec-------ccccEEEEEEcCCCCeEEEEeCCCcEEEEecCcccee
Q 021247          206 LVYSPVDPRVLFSASDDTHVHMYDAEGKSLVTAMSG-------HASWVLSVDASPDGAAITTGSSDRTVKLWDLNMRAAM  278 (315)
Q Consensus       206 ~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~-------~~~~i~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~  278 (315)
                      +.+-.......++...-+.--+++++....+..+..       ....++.+..+|...+.+++..|+.|+++|..+++.+
T Consensus       445 vd~~ss~~a~~~~s~~~~~~~~~~~ev~s~~~~~~s~~~~~~~~~~~in~vVs~~~~~~~~~~hed~~Ir~~dn~~~~~l  524 (577)
T KOG0642|consen  445 VDRTSSRPAHSLASFRFGYTSIDDMEVVSDLLIFESSASPGPRRYPQINKVVSHPTADITFTAHEDRSIRFFDNKTGKIL  524 (577)
T ss_pred             EeeccchhHhhhhhcccccccchhhhhhhheeeccccCCCcccccCccceEEecCCCCeeEecccCCceecccccccccc
Confidence            666544444444444444444455443332222211       1244677889999999999999999999999999999


Q ss_pred             hcccccccceEEEEEeeCCCEEEEEeCCCcEEEeec
Q 021247          279 QSMTNHTDQVWGVSFRPLGGRVVSVSDDKSISLYEY  314 (315)
Q Consensus       279 ~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~i~i~~~  314 (315)
                      +.+..|...++++++.|+|.+|++++.|+.+++|.+
T Consensus       525 ~s~~a~~~svtslai~~ng~~l~s~s~d~sv~l~kl  560 (577)
T KOG0642|consen  525 HSMVAHKDSVTSLAIDPNGPYLMSGSHDGSVRLWKL  560 (577)
T ss_pred             hheeeccceecceeecCCCceEEeecCCceeehhhc
Confidence            999999999999999999999999999999999976

>KOG1963 consensus WD40 repeat protein [General function prediction only]

Probab=99.86  E-value=7.6e-19  Score=153.13  Aligned_cols=299  Identities=15%  Similarity=0.221  Sum_probs=213.5

Q ss_pred             hhhhhccccceEEEEEeecCCCCCcEEEEeeCCCcEEEEcCCC---Ccc-eeeccccccceEEEEeCCCCCEEEEeeCCC
Q 021247            7 KSVENAHEESVWAVTWVPATETRPALLLTGSLDETVKLWRPDD---MQL-ERTNTGHCLGVVSVAAHPSGIIAASASLDS   82 (315)
Q Consensus         7 ~~~~~~h~~~v~~v~~~~~~~~~~~~l~sgs~d~~v~~w~~~~---~~~-~~~~~~h~~~v~~~~~~~~g~~l~s~~~d~   82 (315)
                      .....-|+-.++|++++|.+.    ++++|..||.|.+|.-..   ... ...+.=|...|+++.|+++|.+|+||+..+
T Consensus       198 ~~~~~~Htf~~t~~~~spn~~----~~Aa~d~dGrI~vw~d~~~~~~~~t~t~lHWH~~~V~~L~fS~~G~~LlSGG~E~  273 (792)
T KOG1963|consen  198 RDITVHHTFNITCVALSPNER----YLAAGDSDGRILVWRDFGSSDDSETCTLLHWHHDEVNSLSFSSDGAYLLSGGREG  273 (792)
T ss_pred             chhhhhhcccceeEEeccccc----eEEEeccCCcEEEEeccccccccccceEEEecccccceeEEecCCceEeecccce
Confidence            344567888899999999775    799999999999996322   111 223445788999999999999999999999


Q ss_pred             eEEEEECCCCceeEEeeCCcccEEEEEECCCCCeEEEEecCCCeEEEEecCCcceeeeecCCCCCCCCCCccCCCCcceE
Q 021247           83 FVRVFDVDTNASIATLEASPSEVWQMQFDPKGTTLAVAGGGSASVKLWDTATWNLIATLSIPRPEGLKPTDKSSSKKFVL  162 (315)
Q Consensus        83 ~i~~w~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~  162 (315)
                      .+-+|.+.+++ .+.+..-..+|..+.++|++....+. ..|.+|.+....+.....++....+..  +..+.......+
T Consensus       274 VLv~Wq~~T~~-kqfLPRLgs~I~~i~vS~ds~~~sl~-~~DNqI~li~~~dl~~k~tIsgi~~~~--~~~k~~~~~l~t  349 (792)
T KOG1963|consen  274 VLVLWQLETGK-KQFLPRLGSPILHIVVSPDSDLYSLV-LEDNQIHLIKASDLEIKSTISGIKPPT--PSTKTRPQSLTT  349 (792)
T ss_pred             EEEEEeecCCC-cccccccCCeeEEEEEcCCCCeEEEE-ecCceEEEEeccchhhhhhccCccCCC--ccccccccccce
Confidence            99999999987 45555566889999999999876554 568999998887766655554333221  111334456678


Q ss_pred             EEEECCCCCEEEEecCCCcEEEEEcccceeeeeec-----------CCccceEEEEEcCCCCcEEEEEe--------C--
Q 021247          163 SVAWSPDGRRIACGSMDGTISVFDVTRAKFLHHLE-----------GHFMPVRSLVYSPVDPRVLFSAS--------D--  221 (315)
Q Consensus       163 ~~~~~~~~~~l~~~s~dg~i~i~d~~~~~~~~~~~-----------~~~~~v~~~~~~~~~~~~l~s~~--------~--  221 (315)
                      .++++|.-+.++-.+..|.|.+||+-+.+.+..+.           .+...++.++.+.. +.++++.-        .  
T Consensus       350 ~~~idpr~~~~vln~~~g~vQ~ydl~td~~i~~~~v~~~n~~~~~~n~~v~itav~~~~~-gs~maT~E~~~d~~~~~~~  428 (792)
T KOG1963|consen  350 GVSIDPRTNSLVLNGHPGHVQFYDLYTDSTIYKLQVCDENYSDGDVNIQVGITAVARSRF-GSWMATLEARIDKFNFFDG  428 (792)
T ss_pred             eEEEcCCCCceeecCCCceEEEEeccccceeeeEEEEeecccCCcceeEEeeeeehhhcc-ceEEEEeeeeehhhhccCc
Confidence            89999977778888899999999997766554432           12234566666653 66666653        2  


Q ss_pred             CCeEEEEeCCCC----eeEEE-eecccccEEEEEEcC-CCC-eEEEEeCCCcEEEEecCc----------cceehccccc
Q 021247          222 DTHVHMYDAEGK----SLVTA-MSGHASWVLSVDASP-DGA-AITTGSSDRTVKLWDLNM----------RAAMQSMTNH  284 (315)
Q Consensus       222 d~~i~~wd~~~~----~~~~~-~~~~~~~i~~~~~~~-~~~-~l~s~~~d~~i~iwd~~~----------~~~~~~~~~~  284 (315)
                      ...+++|-....    .+... ...|...+...++.+ ... .+++++.||.+++|-+..          +.+...-..|
T Consensus       429 e~~LKFW~~n~~~kt~~L~T~I~~PH~~~~vat~~~~~~rs~~~vta~~dg~~KiW~~~~~~n~~k~~s~W~c~~i~sy~  508 (792)
T KOG1963|consen  429 EVSLKFWQYNPNSKTFILNTKINNPHGNAFVATIFLNPTRSVRCVTASVDGDFKIWVFTDDSNIYKKSSNWTCKAIGSYH  508 (792)
T ss_pred             eEEEEEEEEcCCcceeEEEEEEecCCCceeEEEEEecCcccceeEEeccCCeEEEEEEecccccCcCccceEEeeeeccc
Confidence            235778864432    22222 346776665555544 333 789999999999998832          1122222347


Q ss_pred             ccceEEEEEeeCCCEEEEEeCCCcEEEeecC
Q 021247          285 TDQVWGVSFRPLGGRVVSVSDDKSISLYEYS  315 (315)
Q Consensus       285 ~~~v~~~~~s~~~~~l~s~~~d~~i~i~~~~  315 (315)
                      ..++++++|+.|| .++++|.|++|.|||+.
T Consensus       509 k~~i~a~~fs~dG-slla~s~~~~Itiwd~~  538 (792)
T KOG1963|consen  509 KTPITALCFSQDG-SLLAVSFDDTITIWDYD  538 (792)
T ss_pred             cCcccchhhcCCC-cEEEEecCCEEEEecCC
Confidence            7899999999999 58889999999999974

>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]

Probab=99.86  E-value=1.2e-19  Score=139.42  Aligned_cols=249  Identities=17%  Similarity=0.259  Sum_probs=185.0

Q ss_pred             hhhhccccceEEEEEeecCCCCCcEEEEeeCC-------CcEEEEcCCCCc---------ceeecc-ccccceEEEEeCC
Q 021247            8 SVENAHEESVWAVTWVPATETRPALLLTGSLD-------ETVKLWRPDDMQ---------LERTNT-GHCLGVVSVAAHP   70 (315)
Q Consensus         8 ~~~~~h~~~v~~v~~~~~~~~~~~~l~sgs~d-------~~v~~w~~~~~~---------~~~~~~-~h~~~v~~~~~~~   70 (315)
                      .+..-|.++||.++-+|....   +|+|+-.+       -.+-||.+....         +...++ .+.+.+.++-|.|
T Consensus        57 kvf~h~agEvw~las~P~d~~---ilaT~yn~~s~s~vl~~aaiw~ipe~~~~S~~~tlE~v~~Ldteavg~i~cvew~P  133 (370)
T KOG1007|consen   57 KVFFHHAGEVWDLASSPFDQR---ILATVYNDTSDSGVLTGAAIWQIPEPLGQSNSSTLECVASLDTEAVGKINCVEWEP  133 (370)
T ss_pred             hhhhcCCcceehhhcCCCCCc---eEEEEEeccCCCcceeeEEEEecccccCccccchhhHhhcCCHHHhCceeeEEEcC
Confidence            345678899999999998764   56655332       236789754221         122233 4556899999999


Q ss_pred             CCCEEEEeeCCCeEEEEECCCCce-eEEeeC-----CcccEEEEEECC--CCCeEEEEecCCCeEEEEecCCcceeeeec
Q 021247           71 SGIIAASASLDSFVRVFDVDTNAS-IATLEA-----SPSEVWQMQFDP--KGTTLAVAGGGSASVKLWDTATWNLIATLS  142 (315)
Q Consensus        71 ~g~~l~s~~~d~~i~~w~~~~~~~-~~~~~~-----~~~~v~~~~~~~--~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~  142 (315)
                      ++..+++.. |..|.+|++..... +..+..     +.....+-+|+|  +++.++  ...|+++..||+|+.+....+.
T Consensus       134 ns~klasm~-dn~i~l~~l~ess~~vaev~ss~s~e~~~~ftsg~WspHHdgnqv~--tt~d~tl~~~D~RT~~~~~sI~  210 (370)
T KOG1007|consen  134 NSDKLASMD-DNNIVLWSLDESSKIVAEVLSSESAEMRHSFTSGAWSPHHDGNQVA--TTSDSTLQFWDLRTMKKNNSIE  210 (370)
T ss_pred             CCCeeEEec-cCceEEEEcccCcchheeecccccccccceecccccCCCCccceEE--EeCCCcEEEEEccchhhhcchh
Confidence            999999887 88899999998766 333321     233456667888  455543  3568999999999877654442


Q ss_pred             CCCCCCCCCCccCCCCcceEEEEECCCCC-EEEEecCCCcEEEEEcccce-eeeeecCCccceEEEEEcCCCCcEEEEEe
Q 021247          143 IPRPEGLKPTDKSSSKKFVLSVAWSPDGR-RIACGSMDGTISVFDVTRAK-FLHHLEGHFMPVRSLVYSPVDPRVLFSAS  220 (315)
Q Consensus       143 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~l~~~s~dg~i~i~d~~~~~-~~~~~~~~~~~v~~~~~~~~~~~~l~s~~  220 (315)
                                  ..|...++.+.|+|+-+ +|++|+.||.|++||.+..+ ++..+.+|.--|+++.|+|...+++++++
T Consensus       211 ------------dAHgq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~tk~pv~el~~HsHWvW~VRfn~~hdqLiLs~~  278 (370)
T KOG1007|consen  211 ------------DAHGQRVRDLDFNPNKQHILVTCGDDGYVRIWDTRKTKFPVQELPGHSHWVWAVRFNPEHDQLILSGG  278 (370)
T ss_pred             ------------hhhcceeeeccCCCCceEEEEEcCCCccEEEEeccCCCccccccCCCceEEEEEEecCccceEEEecC
Confidence                        23555699999999865 67889999999999998554 57889999999999999999999999999


Q ss_pred             CCCeEEEEeCCCC-----------------------------eeEEEeecccccEEEEEEcCCCC-eEEEEeCCCcEEEE
Q 021247          221 DDTHVHMYDAEGK-----------------------------SLVTAMSGHASWVLSVDASPDGA-AITTGSSDRTVKLW  270 (315)
Q Consensus       221 ~d~~i~~wd~~~~-----------------------------~~~~~~~~~~~~i~~~~~~~~~~-~l~s~~~d~~i~iw  270 (315)
                      .|..+.+|....-                             -++..+..|...|.+++|+.-.. ++|+=+.||++-|=
T Consensus       279 SDs~V~Lsca~svSSE~qi~~~~dese~e~~dseer~kpL~dg~l~tydehEDSVY~~aWSsadPWiFASLSYDGRviIs  358 (370)
T KOG1007|consen  279 SDSAVNLSCASSVSSEQQIEFEDDESESEDEDSEERVKPLQDGQLETYDEHEDSVYALAWSSADPWIFASLSYDGRVIIS  358 (370)
T ss_pred             CCceeEEEeccccccccccccccccccCcchhhHHhcccccccccccccccccceEEEeeccCCCeeEEEeccCceEEee
Confidence            9999999964210                             12235667999999999998655 56888999999876


Q ss_pred             ecCc
Q 021247          271 DLNM  274 (315)
Q Consensus       271 d~~~  274 (315)
                      .+..
T Consensus       359 ~V~r  362 (370)
T KOG1007|consen  359 SVPR  362 (370)
T ss_pred             cCCh
Confidence            6653

>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]

Probab=99.86  E-value=1.9e-19  Score=151.89  Aligned_cols=153  Identities=25%  Similarity=0.406  Sum_probs=125.8

Q ss_pred             eEEEEECC-CCCEEEEecCCCcEEEEEcccc-------eeeeeecCCccceEEEEEcCCCCcEEEEEeCCCeEEEEeCCC
Q 021247          161 VLSVAWSP-DGRRIACGSMDGTISVFDVTRA-------KFLHHLEGHFMPVRSLVYSPVDPRVLFSASDDTHVHMYDAEG  232 (315)
Q Consensus       161 i~~~~~~~-~~~~l~~~s~dg~i~i~d~~~~-------~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~  232 (315)
                      |+.+.|+| |...|++++.||.|++|.+..+       .....+..|...|.++.|+|.-..+|++++.|-+|++||++.
T Consensus       630 vtDl~WdPFD~~rLAVa~ddg~i~lWr~~a~gl~e~~~tPe~~lt~h~eKI~slRfHPLAadvLa~asyd~Ti~lWDl~~  709 (1012)
T KOG1445|consen  630 VTDLHWDPFDDERLAVATDDGQINLWRLTANGLPENEMTPEKILTIHGEKITSLRFHPLAADVLAVASYDSTIELWDLAN  709 (1012)
T ss_pred             eeecccCCCChHHeeecccCceEEEEEeccCCCCcccCCcceeeecccceEEEEEecchhhhHhhhhhccceeeeeehhh
Confidence            56789998 7789999999999999998543       234567889999999999998888999999999999999999


Q ss_pred             CeeEEEeecccccEEEEEEcCCCCeEEEEeCCCcEEEEecCccce-ehcccccc-cceEEEEEeeCCCEEEEEeCCC---
Q 021247          233 KSLVTAMSGHASWVLSVDASPDGAAITTGSSDRTVKLWDLNMRAA-MQSMTNHT-DQVWGVSFRPLGGRVVSVSDDK---  307 (315)
Q Consensus       233 ~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~-~~~~~~~~-~~v~~~~~s~~~~~l~s~~~d~---  307 (315)
                      .+....+.+|.+.|.+++|+|+|+.+++.++||+|++++-++++. +..-.+.. ..--.+.|--+|++++..|-|+   
T Consensus       710 ~~~~~~l~gHtdqIf~~AWSpdGr~~AtVcKDg~~rVy~Prs~e~pv~Eg~gpvgtRgARi~wacdgr~viv~Gfdk~Se  789 (1012)
T KOG1445|consen  710 AKLYSRLVGHTDQIFGIAWSPDGRRIATVCKDGTLRVYEPRSREQPVYEGKGPVGTRGARILWACDGRIVIVVGFDKSSE  789 (1012)
T ss_pred             hhhhheeccCcCceeEEEECCCCcceeeeecCceEEEeCCCCCCCccccCCCCccCcceeEEEEecCcEEEEecccccch
Confidence            999999999999999999999999999999999999999887643 33322211 1223467888999998887764   


Q ss_pred             -cEEEee
Q 021247          308 -SISLYE  313 (315)
Q Consensus       308 -~i~i~~  313 (315)
                       .|.+|+
T Consensus       790 RQv~~Y~  796 (1012)
T KOG1445|consen  790 RQVQMYD  796 (1012)
T ss_pred             hhhhhhh
Confidence             455554

>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]

Probab=99.86  E-value=1.2e-19  Score=139.37  Aligned_cols=238  Identities=21%  Similarity=0.365  Sum_probs=176.8

Q ss_pred             ccccceEEEEEeecCCC-CCcEEEEeeCCCcEEEEcCCC--Cccee-------eccccccceEEEEeCC-CCCEEEEeeC
Q 021247           12 AHEESVWAVTWVPATET-RPALLLTGSLDETVKLWRPDD--MQLER-------TNTGHCLGVVSVAAHP-SGIIAASASL   80 (315)
Q Consensus        12 ~h~~~v~~v~~~~~~~~-~~~~l~sgs~d~~v~~w~~~~--~~~~~-------~~~~h~~~v~~~~~~~-~g~~l~s~~~   80 (315)
                      .|.=+++.+.|.|+... .+.+|||.+  ..+++|....  .+..-       ....+..++++..|+. +-+++.+.+-
T Consensus        94 d~~YP~tK~~wiPd~~g~~pdlLATs~--D~LRlWri~~ee~~~~~~~~L~~~kns~~~aPlTSFDWne~dp~~igtSSi  171 (364)
T KOG0290|consen   94 DHPYPVTKLMWIPDSKGVYPDLLATSS--DFLRLWRIGDEESRVELQSVLNNNKNSEFCAPLTSFDWNEVDPNLIGTSSI  171 (364)
T ss_pred             CCCCCccceEecCCccccCcchhhccc--CeEEEEeccCcCCceehhhhhccCcccccCCcccccccccCCcceeEeecc
Confidence            57789999999998752 345666544  5899998652  22111       1234667899999986 4578999999


Q ss_pred             CCeEEEEECCCCce---eEEeeCCcccEEEEEECCCCCeEEEEecCCCeEEEEecCCcceeeeecCCCCCCCCCCccCCC
Q 021247           81 DSFVRVFDVDTNAS---IATLEASPSEVWQMQFDPKGTTLAVAGGGSASVKLWDTATWNLIATLSIPRPEGLKPTDKSSS  157 (315)
Q Consensus        81 d~~i~~w~~~~~~~---~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~  157 (315)
                      |-++-+||++++..   ...+..|..+|..++|...+..++++.+.||.+|++|+|..+--..+. ..+         ..
T Consensus       172 DTTCTiWdie~~~~~~vkTQLIAHDKEV~DIaf~~~s~~~FASvgaDGSvRmFDLR~leHSTIIY-E~p---------~~  241 (364)
T KOG0290|consen  172 DTTCTIWDIETGVSGTVKTQLIAHDKEVYDIAFLKGSRDVFASVGADGSVRMFDLRSLEHSTIIY-EDP---------SP  241 (364)
T ss_pred             cCeEEEEEEeeccccceeeEEEecCcceeEEEeccCccceEEEecCCCcEEEEEecccccceEEe-cCC---------CC
Confidence            99999999998743   456778999999999999888899999999999999999755332221 111         11


Q ss_pred             CcceEEEEECCC-CCEEEEecCC-CcEEEEEccc-ceeeeeecCCccceEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCe
Q 021247          158 KKFVLSVAWSPD-GRRIACGSMD-GTISVFDVTR-AKFLHHLEGHFMPVRSLVYSPVDPRVLFSASDDTHVHMYDAEGKS  234 (315)
Q Consensus       158 ~~~i~~~~~~~~-~~~l~~~s~d-g~i~i~d~~~-~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~  234 (315)
                      ......++|+++ -+++|+-..| ..|.+.|++. ...+..+++|...|+.++|.|..+..|.++++|..+.+||+....
T Consensus       242 ~~pLlRLswnkqDpnymATf~~dS~~V~iLDiR~P~tpva~L~~H~a~VNgIaWaPhS~~hictaGDD~qaliWDl~q~~  321 (364)
T KOG0290|consen  242 STPLLRLSWNKQDPNYMATFAMDSNKVVILDIRVPCTPVARLRNHQASVNGIAWAPHSSSHICTAGDDCQALIWDLQQMP  321 (364)
T ss_pred             CCcceeeccCcCCchHHhhhhcCCceEEEEEecCCCcceehhhcCcccccceEecCCCCceeeecCCcceEEEEeccccc
Confidence            334678899885 4566765554 4699999974 456888999999999999999888999999999999999986431


Q ss_pred             e------EEEeecccccEEEEEEcC-CCCeEEEEe
Q 021247          235 L------VTAMSGHASWVLSVDASP-DGAAITTGS  262 (315)
Q Consensus       235 ~------~~~~~~~~~~i~~~~~~~-~~~~l~s~~  262 (315)
                      .      +..+. -.+.|+.+.|++ .+..++.+.
T Consensus       322 ~~~~~dPilay~-a~~EVNqi~Ws~~~~Dwiai~~  355 (364)
T KOG0290|consen  322 RENGEDPILAYT-AGGEVNQIQWSSSQPDWIAICF  355 (364)
T ss_pred             ccCCCCchhhhh-ccceeeeeeecccCCCEEEEEe
Confidence            1      11122 345689999997 455666554

>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]

Probab=99.86  E-value=1.9e-19  Score=159.57  Aligned_cols=280  Identities=17%  Similarity=0.265  Sum_probs=196.1

Q ss_pred             ceEEEEEeecCCCCCcEEEEeeCCCcEEEEcCCCCcceeeccccc---cceEEEEeCC--CCCEEEEeeCCCeEEEEECC
Q 021247           16 SVWAVTWVPATETRPALLLTGSLDETVKLWRPDDMQLERTNTGHC---LGVVSVAAHP--SGIIAASASLDSFVRVFDVD   90 (315)
Q Consensus        16 ~v~~v~~~~~~~~~~~~l~sgs~d~~v~~w~~~~~~~~~~~~~h~---~~v~~~~~~~--~g~~l~s~~~d~~i~~w~~~   90 (315)
                      .-..+.|.|..+    .++++.....|++||.+..+....+..+.   ..|..+.+-.  |..++++|+.||.||||+--
T Consensus      1066 ~pk~~~~hpf~p----~i~~ad~r~~i~vwd~e~~~~l~~F~n~~~~~t~Vs~l~liNe~D~aLlLtas~dGvIRIwk~y 1141 (1387)
T KOG1517|consen 1066 PPKTLKFHPFEP----QIAAADDRERIRVWDWEKGRLLNGFDNGAFPDTRVSDLELINEQDDALLLTASSDGVIRIWKDY 1141 (1387)
T ss_pred             CCceeeecCCCc----eeEEcCCcceEEEEecccCceeccccCCCCCCCccceeeeecccchhheeeeccCceEEEeccc
Confidence            455677888765    47777767789999998777655554332   3466666533  45789999999999999743


Q ss_pred             CC-----ceeEEee-------CCcccEEEEEECCCCCeEEEEecCCCeEEEEecCCcceeeeecCCCCCCCCCCccCCCC
Q 021247           91 TN-----ASIATLE-------ASPSEVWQMQFDPKGTTLAVAGGGSASVKLWDTATWNLIATLSIPRPEGLKPTDKSSSK  158 (315)
Q Consensus        91 ~~-----~~~~~~~-------~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~  158 (315)
                      ..     +.+....       ...+.-.-+.|.....+++++ |+-..|+|||......+..+....            .
T Consensus      1142 ~~~~~~~eLVTaw~~Ls~~~~~~r~~~~v~dWqQ~~G~Ll~t-Gd~r~IRIWDa~~E~~~~diP~~s------------~ 1208 (1387)
T KOG1517|consen 1142 ADKWKKPELVTAWSSLSDQLPGARGTGLVVDWQQQSGHLLVT-GDVRSIRIWDAHKEQVVADIPYGS------------S 1208 (1387)
T ss_pred             ccccCCceeEEeeccccccCccCCCCCeeeehhhhCCeEEec-CCeeEEEEEecccceeEeecccCC------------C
Confidence            22     1222111       111222556787776766655 457899999998766665554321            1


Q ss_pred             cceEEEEECC-CCCEEEEecCCCcEEEEEcccce---eeeeecCCccc--eEEEEEcCCCCcEEEEEeCCCeEEEEeCCC
Q 021247          159 KFVLSVAWSP-DGRRIACGSMDGTISVFDVTRAK---FLHHLEGHFMP--VRSLVYSPVDPRVLFSASDDTHVHMYDAEG  232 (315)
Q Consensus       159 ~~i~~~~~~~-~~~~l~~~s~dg~i~i~d~~~~~---~~~~~~~~~~~--v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~  232 (315)
                      ..++++.-+. .|+.+++|..||.|++||.+...   .+...+.|+..  |..+.+.+.+-.-|++|+.||.|++||++.
T Consensus      1209 t~vTaLS~~~~~gn~i~AGfaDGsvRvyD~R~a~~ds~v~~~R~h~~~~~Iv~~slq~~G~~elvSgs~~G~I~~~DlR~ 1288 (1387)
T KOG1517|consen 1209 TLVTALSADLVHGNIIAAGFADGSVRVYDRRMAPPDSLVCVYREHNDVEPIVHLSLQRQGLGELVSGSQDGDIQLLDLRM 1288 (1387)
T ss_pred             ccceeecccccCCceEEEeecCCceEEeecccCCccccceeecccCCcccceeEEeecCCCcceeeeccCCeEEEEeccc
Confidence            2255554443 47999999999999999987543   35566778776  888888875555799999999999999987


Q ss_pred             CeeEE--Eeeccc--c-cEEEEEEcCCCCeEEEEeCCCcEEEEecCccceehccccc-------ccceEEEEEeeCCCEE
Q 021247          233 KSLVT--AMSGHA--S-WVLSVDASPDGAAITTGSSDRTVKLWDLNMRAAMQSMTNH-------TDQVWGVSFRPLGGRV  300 (315)
Q Consensus       233 ~~~~~--~~~~~~--~-~i~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~-------~~~v~~~~~s~~~~~l  300 (315)
                      .....  ....|-  + ..+++..+++..++|+|+. +.|+||++.. +.+..+..+       .+.+.+++|||-.-.+
T Consensus      1289 ~~~e~~~~iv~~~~yGs~lTal~VH~hapiiAsGs~-q~ikIy~~~G-~~l~~~k~n~~F~~q~~gs~scL~FHP~~~ll 1366 (1387)
T KOG1517|consen 1289 SSKETFLTIVAHWEYGSALTALTVHEHAPIIASGSA-QLIKIYSLSG-EQLNIIKYNPGFMGQRIGSVSCLAFHPHRLLL 1366 (1387)
T ss_pred             CcccccceeeeccccCccceeeeeccCCCeeeecCc-ceEEEEecCh-hhhcccccCcccccCcCCCcceeeecchhHhh
Confidence            42222  222332  3 4889999999999999998 9999999863 333333221       2467899999988788


Q ss_pred             EEEeCCCcEEEeec
Q 021247          301 VSVSDDKSISLYEY  314 (315)
Q Consensus       301 ~s~~~d~~i~i~~~  314 (315)
                      |+|+.|.+|.||.-
T Consensus      1367 AaG~~Ds~V~iYs~ 1380 (1387)
T KOG1517|consen 1367 AAGSADSTVSIYSC 1380 (1387)
T ss_pred             hhccCCceEEEeec
Confidence            99999999999963

>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]

Probab=99.86  E-value=4e-19  Score=136.58  Aligned_cols=282  Identities=18%  Similarity=0.273  Sum_probs=199.3

Q ss_pred             ceEEEEEeecCCCCCcEEEEeeC----CCcEEEEcCC--CCcceee-ccccccceEEEEeCCCCC-----EEEEeeCCCe
Q 021247           16 SVWAVTWVPATETRPALLLTGSL----DETVKLWRPD--DMQLERT-NTGHCLGVVSVAAHPSGI-----IAASASLDSF   83 (315)
Q Consensus        16 ~v~~v~~~~~~~~~~~~l~sgs~----d~~v~~w~~~--~~~~~~~-~~~h~~~v~~~~~~~~g~-----~l~s~~~d~~   83 (315)
                      ..+++.|+-. +...-.|+.||.    .+.|.+-.++  .++.... .-.|.-+++.+.|.|+..     +|++.  +-.
T Consensus        46 ~lya~~Ws~~-~~~~~rla~gS~~Ee~~Nkvqiv~ld~~s~e~~~~a~fd~~YP~tK~~wiPd~~g~~pdlLATs--~D~  122 (364)
T KOG0290|consen   46 PLYAMNWSVR-PDKKFRLAVGSFIEEYNNKVQIVQLDEDSGELVEDANFDHPYPVTKLMWIPDSKGVYPDLLATS--SDF  122 (364)
T ss_pred             ceeeeccccC-CCcceeEEEeeeccccCCeeEEEEEccCCCceeccCCCCCCCCccceEecCCccccCcchhhcc--cCe
Confidence            6788999854 334457898885    3556666443  3332221 235888999999998753     55544  347


Q ss_pred             EEEEECCCCceeE---------EeeCCcccEEEEEECCCCCeEEEEecCCCeEEEEecCCcceeeeecCCCCCCCCCCcc
Q 021247           84 VRVFDVDTNASIA---------TLEASPSEVWQMQFDPKGTTLAVAGGGSASVKLWDTATWNLIATLSIPRPEGLKPTDK  154 (315)
Q Consensus        84 i~~w~~~~~~~~~---------~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~  154 (315)
                      +|+|.+.......         ....+..++.+..|+.-...++.+++-|-++.+||+.++..          +...++.
T Consensus       123 LRlWri~~ee~~~~~~~~L~~~kns~~~aPlTSFDWne~dp~~igtSSiDTTCTiWdie~~~~----------~~vkTQL  192 (364)
T KOG0290|consen  123 LRLWRIGDEESRVELQSVLNNNKNSEFCAPLTSFDWNEVDPNLIGTSSIDTTCTIWDIETGVS----------GTVKTQL  192 (364)
T ss_pred             EEEEeccCcCCceehhhhhccCcccccCCcccccccccCCcceeEeecccCeEEEEEEeeccc----------cceeeEE
Confidence            9999998532111         11234568889999987777888889999999999987521          0011123


Q ss_pred             CCCCcceEEEEECCCCC-EEEEecCCCcEEEEEcccceeeeeec---CCccceEEEEEcCCCCcEEEEEeCC-CeEEEEe
Q 021247          155 SSSKKFVLSVAWSPDGR-RIACGSMDGTISVFDVTRAKFLHHLE---GHFMPVRSLVYSPVDPRVLFSASDD-THVHMYD  229 (315)
Q Consensus       155 ~~~~~~i~~~~~~~~~~-~l~~~s~dg~i~i~d~~~~~~~~~~~---~~~~~v~~~~~~~~~~~~l~s~~~d-~~i~~wd  229 (315)
                      ..|...|..++|...+. .||+.+.||.+++||++....-..+.   ....+..-++|++.+++++++-..| ..|.+-|
T Consensus       193 IAHDKEV~DIaf~~~s~~~FASvgaDGSvRmFDLR~leHSTIIYE~p~~~~pLlRLswnkqDpnymATf~~dS~~V~iLD  272 (364)
T KOG0290|consen  193 IAHDKEVYDIAFLKGSRDVFASVGADGSVRMFDLRSLEHSTIIYEDPSPSTPLLRLSWNKQDPNYMATFAMDSNKVVILD  272 (364)
T ss_pred             EecCcceeEEEeccCccceEEEecCCCcEEEEEecccccceEEecCCCCCCcceeeccCcCCchHHhhhhcCCceEEEEE
Confidence            35666799999998654 67899999999999998765443332   2234677889999999999887765 5689999


Q ss_pred             CCC-CeeEEEeecccccEEEEEEcCC-CCeEEEEeCCCcEEEEecCccce------ehcccccccceEEEEEeeCCCEEE
Q 021247          230 AEG-KSLVTAMSGHASWVLSVDASPD-GAAITTGSSDRTVKLWDLNMRAA------MQSMTNHTDQVWGVSFRPLGGRVV  301 (315)
Q Consensus       230 ~~~-~~~~~~~~~~~~~i~~~~~~~~-~~~l~s~~~d~~i~iwd~~~~~~------~~~~~~~~~~v~~~~~s~~~~~l~  301 (315)
                      ++. ...+..+++|.+.|++++|.|. ...+.|+|.|..+.+||+.+...      +..+. -++.|+.+.|++...--+
T Consensus       273 iR~P~tpva~L~~H~a~VNgIaWaPhS~~hictaGDD~qaliWDl~q~~~~~~~dPilay~-a~~EVNqi~Ws~~~~Dwi  351 (364)
T KOG0290|consen  273 IRVPCTPVARLRNHQASVNGIAWAPHSSSHICTAGDDCQALIWDLQQMPRENGEDPILAYT-AGGEVNQIQWSSSQPDWI  351 (364)
T ss_pred             ecCCCcceehhhcCcccccceEecCCCCceeeecCCcceEEEEecccccccCCCCchhhhh-ccceeeeeeecccCCCEE
Confidence            884 5678889999999999999996 46899999999999999976322      22222 356899999997655444


Q ss_pred             EEeCCCcEEE
Q 021247          302 SVSDDKSISL  311 (315)
Q Consensus       302 s~~~d~~i~i  311 (315)
                      +.+..+++.|
T Consensus       352 ai~~~kklei  361 (364)
T KOG0290|consen  352 AICFGKKLEI  361 (364)
T ss_pred             EEEecCeeeE
Confidence            4444555544

>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]

Probab=99.85  E-value=1.6e-19  Score=144.50  Aligned_cols=266  Identities=22%  Similarity=0.317  Sum_probs=185.5

Q ss_pred             hhhhhhccccceEEEEEeecCCCCCcEEEEeeCCCcEEEEcCC--------C--------CcceeeccccccceEEEEeC
Q 021247            6 LKSVENAHEESVWAVTWVPATETRPALLLTGSLDETVKLWRPD--------D--------MQLERTNTGHCLGVVSVAAH   69 (315)
Q Consensus         6 ~~~~~~~h~~~v~~v~~~~~~~~~~~~l~sgs~d~~v~~w~~~--------~--------~~~~~~~~~h~~~v~~~~~~   69 (315)
                      ..+++..|+..|++|.|+|.++    +|+||+.+|.|.+|...        +        ....+...+|...+..++|+
T Consensus        57 y~s~Ls~H~~aVN~vRf~p~ge----lLASg~D~g~v~lWk~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws  132 (434)
T KOG1009|consen   57 YLSSLSRHTRAVNVVRFSPDGE----LLASGGDGGEVFLWKQGDVRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWS  132 (434)
T ss_pred             EeecccCCcceeEEEEEcCCcC----eeeecCCCceEEEEEecCcCCccccchhhhCccceEEEEEecccccchhhhhcc
Confidence            4567889999999999999886    79999999999999754        2        12334567899999999999


Q ss_pred             CCCCEEEEeeCCCeEEEEECCCCceeEEeeCCcccEEEEEECCCCCeEEEEecCCCeEEEEecCCcceeeeec---CC--
Q 021247           70 PSGIIAASASLDSFVRVFDVDTNASIATLEASPSEVWQMQFDPKGTTLAVAGGGSASVKLWDTATWNLIATLS---IP--  144 (315)
Q Consensus        70 ~~g~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~---~~--  144 (315)
                      |++..+++++-|..+++||+..++....+..|...+..++|+|-+.+++ +-+.|...+.+.+...+.+....   .+  
T Consensus       133 ~d~~~l~s~s~dns~~l~Dv~~G~l~~~~~dh~~yvqgvawDpl~qyv~-s~s~dr~~~~~~~~~~~~~~~~~~~~m~~~  211 (434)
T KOG1009|consen  133 PDSNFLVSGSVDNSVRLWDVHAGQLLAILDDHEHYVQGVAWDPLNQYVA-SKSSDRHPEGFSAKLKQVIKRHGLDIMPAK  211 (434)
T ss_pred             CCCceeeeeeccceEEEEEeccceeEeeccccccccceeecchhhhhhh-hhccCcccceeeeeeeeeeeeeeeeEeeec
Confidence            9999999999999999999999999999999999999999999988764 44566666666665433332221   00  


Q ss_pred             ---CCCCC--CCCccCCCCcceEEEEECCCCCEEEEecC----CCc-----EEEEEcc-cceeeeeecCCccceEEEEEc
Q 021247          145 ---RPEGL--KPTDKSSSKKFVLSVAWSPDGRRIACGSM----DGT-----ISVFDVT-RAKFLHHLEGHFMPVRSLVYS  209 (315)
Q Consensus       145 ---~~~~~--~~~~~~~~~~~i~~~~~~~~~~~l~~~s~----dg~-----i~i~d~~-~~~~~~~~~~~~~~v~~~~~~  209 (315)
                         +.++.  +......-+.+.+.++|+|+|..|++...    ++.     .++|+-. ..++...+..-..++..+.|+
T Consensus       212 ~~~~~e~~s~rLfhDeTlksFFrRlsfTPdG~llvtPag~~~~g~~~~~n~tYvfsrk~l~rP~~~lp~~~k~~lavr~~  291 (434)
T KOG1009|consen  212 AFNEREGKSTRLFHDETLKSFFRRLSFTPDGSLLVTPAGLFKVGGGVFRNTSYVFSRKDLKRPAARLPSPKKPALAVRFS  291 (434)
T ss_pred             ccCCCCcceeeeeecCchhhhhhhcccCCCCcEEEcccceeeeCCceeeceeEeeccccccCceeecCCCCcceEEEEee
Confidence               00110  00111123456778999999998887531    222     3444432 112333333333344444444


Q ss_pred             CC---------C-------CcEEEEEeCCCeEEEEeCCCCeeEEEe-ecccccEEEEEEcCCCCeEEEEeCCCcEEEEec
Q 021247          210 PV---------D-------PRVLFSASDDTHVHMYDAEGKSLVTAM-SGHASWVLSVDASPDGAAITTGSSDRTVKLWDL  272 (315)
Q Consensus       210 ~~---------~-------~~~l~s~~~d~~i~~wd~~~~~~~~~~-~~~~~~i~~~~~~~~~~~l~s~~~d~~i~iwd~  272 (315)
                      |.         .       -++.++......+++||.+.-..+... .-|-..|++++|+++|..|+..+.||...+-.+
T Consensus       292 pVy~elrp~~~~~~~~~lpyrlvfaiAt~~svyvydtq~~~P~~~v~nihy~~iTDiaws~dg~~l~vSS~DGyCS~vtf  371 (434)
T KOG1009|consen  292 PVYYELRPLSSEKFLFVLPYRLVFAIATKNSVYVYDTQTLEPLAVVDNIHYSAITDIAWSDDGSVLLVSSTDGFCSLVTF  371 (434)
T ss_pred             eeEEEeccccccccccccccceEEEEeecceEEEeccccccceEEEeeeeeeeecceeecCCCcEEEEeccCCceEEEEE
Confidence            31         0       122333344557999999886655543 458889999999999999999999999888776


Q ss_pred             Cccc
Q 021247          273 NMRA  276 (315)
Q Consensus       273 ~~~~  276 (315)
                      ..++
T Consensus       372 e~~e  375 (434)
T KOG1009|consen  372 EPWE  375 (434)
T ss_pred             cchh
Confidence            6543

>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=99.85  E-value=2.2e-18  Score=136.58  Aligned_cols=234  Identities=15%  Similarity=0.279  Sum_probs=172.1

Q ss_pred             ceEEEEeCCCCCEEEEeeCCCeEEEEECCCCceeEEeeCCcccEEEEEECCCCCeEEEEecCC-CeEEEEecCCcceeee
Q 021247           62 GVVSVAAHPSGIIAASASLDSFVRVFDVDTNASIATLEASPSEVWQMQFDPKGTTLAVAGGGS-ASVKLWDTATWNLIAT  140 (315)
Q Consensus        62 ~v~~~~~~~~g~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d-~~i~~~d~~~~~~~~~  140 (315)
                      .+..+.|+.+...|..|+.|| .++++................|.-+=|+.  ..+++.+-.+ +.+++++.+....++.
T Consensus         7 ti~~~~~Nqd~~~lsvGs~~G-yk~~~~~~~~k~~~~~~~~~~IvEmLFSS--SLvaiV~~~qpr~Lkv~~~Kk~~~ICe   83 (391)
T KOG2110|consen    7 TINFIGFNQDSTLLSVGSKDG-YKIFSCSPFEKCFSKDTEGVSIVEMLFSS--SLVAIVSIKQPRKLKVVHFKKKTTICE   83 (391)
T ss_pred             ceeeeeeccceeEEEccCCCc-eeEEecCchHHhhcccCCCeEEEEeeccc--ceeEEEecCCCceEEEEEcccCceEEE
Confidence            455666888888888888888 67888776544222222223344444543  3444444333 4699999998888888


Q ss_pred             ecCCCCCCCCCCccCCCCcceEEEEECCCCCEEEEecCCCcEEEEEcccceeeeeecCC---ccceEEEEEcCCCCcEEE
Q 021247          141 LSIPRPEGLKPTDKSSSKKFVLSVAWSPDGRRIACGSMDGTISVFDVTRAKFLHHLEGH---FMPVRSLVYSPVDPRVLF  217 (315)
Q Consensus       141 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~s~dg~i~i~d~~~~~~~~~~~~~---~~~v~~~~~~~~~~~~l~  217 (315)
                      +..+.+              |.++.++.  +.|+++-++ .|+|||+...+.+.++..-   ...+.++.+++.+..+..
T Consensus        84 ~~fpt~--------------IL~VrmNr--~RLvV~Lee-~IyIydI~~MklLhTI~t~~~n~~gl~AlS~n~~n~ylAy  146 (391)
T KOG2110|consen   84 IFFPTS--------------ILAVRMNR--KRLVVCLEE-SIYIYDIKDMKLLHTIETTPPNPKGLCALSPNNANCYLAY  146 (391)
T ss_pred             EecCCc--------------eEEEEEcc--ceEEEEEcc-cEEEEecccceeehhhhccCCCccceEeeccCCCCceEEe
Confidence            876554              78888875  466666554 4999999999988877643   223444444432223333


Q ss_pred             EEe-CCCeEEEEeCCCCeeEEEeecccccEEEEEEcCCCCeEEEEeCCCc-EEEEecCccceehcccccc--cceEEEEE
Q 021247          218 SAS-DDTHVHMYDAEGKSLVTAMSGHASWVLSVDASPDGAAITTGSSDRT-VKLWDLNMRAAMQSMTNHT--DQVWGVSF  293 (315)
Q Consensus       218 s~~-~d~~i~~wd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~d~~-i~iwd~~~~~~~~~~~~~~--~~v~~~~~  293 (315)
                      -++ ..|.|.+||..+-+.+..+..|.+.+.+++|+++|.+|||++..|+ ||||.+..|..+.++..-.  ..|.+++|
T Consensus       147 p~s~t~GdV~l~d~~nl~~v~~I~aH~~~lAalafs~~G~llATASeKGTVIRVf~v~~G~kl~eFRRG~~~~~IySL~F  226 (391)
T KOG2110|consen  147 PGSTTSGDVVLFDTINLQPVNTINAHKGPLAALAFSPDGTLLATASEKGTVIRVFSVPEGQKLYEFRRGTYPVSIYSLSF  226 (391)
T ss_pred             cCCCCCceEEEEEcccceeeeEEEecCCceeEEEECCCCCEEEEeccCceEEEEEEcCCccEeeeeeCCceeeEEEEEEE
Confidence            333 4688999999999899999999999999999999999999999998 7999999998888775433  36789999


Q ss_pred             eeCCCEEEEEeCCCcEEEeecC
Q 021247          294 RPLGGRVVSVSDDKSISLYEYS  315 (315)
Q Consensus       294 s~~~~~l~s~~~d~~i~i~~~~  315 (315)
                      +|++.+|++.|+.++|.||+++
T Consensus       227 s~ds~~L~~sS~TeTVHiFKL~  248 (391)
T KOG2110|consen  227 SPDSQFLAASSNTETVHIFKLE  248 (391)
T ss_pred             CCCCCeEEEecCCCeEEEEEec
Confidence            9999999999999999999874

>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]

Probab=99.85  E-value=5.3e-19  Score=141.16  Aligned_cols=244  Identities=18%  Similarity=0.311  Sum_probs=175.9

Q ss_pred             ceEEEEEeecCCCCCc----EEEEeeCCCcEEEEcCC-CCcce---eeccccccceEEEEeCCCC-CEEEEeeCCCeEEE
Q 021247           16 SVWAVTWVPATETRPA----LLLTGSLDETVKLWRPD-DMQLE---RTNTGHCLGVVSVAAHPSG-IIAASASLDSFVRV   86 (315)
Q Consensus        16 ~v~~v~~~~~~~~~~~----~l~sgs~d~~v~~w~~~-~~~~~---~~~~~h~~~v~~~~~~~~g-~~l~s~~~d~~i~~   86 (315)
                      .|+.++|-..-...+.    ++.=++..|...+.-.. ++++-   -...||+++|..+.|+|-+ ..++|||.|.+|.|
T Consensus        29 rVs~~tWDS~fcavNPkfiAvi~easgGgaf~ViPl~k~Gr~d~~~P~v~GHt~~vLDi~w~PfnD~vIASgSeD~~v~v  108 (472)
T KOG0303|consen   29 RVSRVTWDSSFCAVNPKFVAVIIEASGGGAFLVIPLVKTGRMDASYPLVCGHTAPVLDIDWCPFNDCVIASGSEDTKVMV  108 (472)
T ss_pred             eeeeeeccccccccCCceEEEEEecCCCcceeecccccccccCCCCCCccCccccccccccCccCCceeecCCCCceEEE
Confidence            5667777543222222    22223344444444322 22222   2346899999999999965 68899999999999


Q ss_pred             EECCCCc-------eeEEeeCCcccEEEEEECCCCCeEEEEecCCCeEEEEecCCcceeeeecCCCCCCCCCCccCCCCc
Q 021247           87 FDVDTNA-------SIATLEASPSEVWQMQFDPKGTTLAVAGGGSASVKLWDTATWNLIATLSIPRPEGLKPTDKSSSKK  159 (315)
Q Consensus        87 w~~~~~~-------~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~  159 (315)
                      |++..+.       .+..+.+|...|-.++|||....++++++.|.+|.+|++.+++.+-++.              |.+
T Consensus       109 W~IPe~~l~~~ltepvv~L~gH~rrVg~V~wHPtA~NVLlsag~Dn~v~iWnv~tgeali~l~--------------hpd  174 (472)
T KOG0303|consen  109 WQIPENGLTRDLTEPVVELYGHQRRVGLVQWHPTAPNVLLSAGSDNTVSIWNVGTGEALITLD--------------HPD  174 (472)
T ss_pred             EECCCcccccCcccceEEEeecceeEEEEeecccchhhHhhccCCceEEEEeccCCceeeecC--------------CCC
Confidence            9987653       4567888999999999999998899999999999999999988765542              556


Q ss_pred             ceEEEEECCCCCEEEEecCCCcEEEEEcccceeeeeecCCcc--ceEEEEEcCCCCcEEEEEe---CCCeEEEEeCCCCe
Q 021247          160 FVLSVAWSPDGRRIACGSMDGTISVFDVTRAKFLHHLEGHFM--PVRSLVYSPVDPRVLFSAS---DDTHVHMYDAEGKS  234 (315)
Q Consensus       160 ~i~~~~~~~~~~~l~~~s~dg~i~i~d~~~~~~~~~~~~~~~--~v~~~~~~~~~~~~l~s~~---~d~~i~~wd~~~~~  234 (315)
                      .|.++.|+.+|.+|++.+.|..|++||.++++.+..-.+|.+  +.+.+ |.. ++.++-+|.   .++.+-+||...-+
T Consensus       175 ~i~S~sfn~dGs~l~TtckDKkvRv~dpr~~~~v~e~~~heG~k~~Rai-fl~-~g~i~tTGfsr~seRq~aLwdp~nl~  252 (472)
T KOG0303|consen  175 MVYSMSFNRDGSLLCTTCKDKKVRVIDPRRGTVVSEGVAHEGAKPARAI-FLA-SGKIFTTGFSRMSERQIALWDPNNLE  252 (472)
T ss_pred             eEEEEEeccCCceeeeecccceeEEEcCCCCcEeeecccccCCCcceeE-Eec-cCceeeeccccccccceeccCccccc
Confidence            799999999999999999999999999999998877777754  34444 433 444554443   47889999976543


Q ss_pred             e---EEEeecccccEEEEEEcCCCCeE-EEEeCCCcEEEEecCccc
Q 021247          235 L---VTAMSGHASWVLSVDASPDGAAI-TTGSSDRTVKLWDLNMRA  276 (315)
Q Consensus       235 ~---~~~~~~~~~~i~~~~~~~~~~~l-~s~~~d~~i~iwd~~~~~  276 (315)
                      .   ...+.. ++.|.=--++|+..++ +.|-.|+.||.|.+....
T Consensus       253 eP~~~~elDt-SnGvl~PFyD~dt~ivYl~GKGD~~IRYyEit~d~  297 (472)
T KOG0303|consen  253 EPIALQELDT-SNGVLLPFYDPDTSIVYLCGKGDSSIRYFEITNEP  297 (472)
T ss_pred             CcceeEEecc-CCceEEeeecCCCCEEEEEecCCcceEEEEecCCC
Confidence            2   223332 3445444578887766 556679999999987654

>KOG0649 consensus WD40 repeat protein [General function prediction only]

Probab=99.85  E-value=1.7e-18  Score=130.06  Aligned_cols=238  Identities=17%  Similarity=0.253  Sum_probs=175.9

Q ss_pred             cceEEEEeCCCCCEEEEeeCCCeEEEEECCCC----------ceeEEeeCCcccEEEEEECCCCCeEEEEecCCCeEEEE
Q 021247           61 LGVVSVAAHPSGIIAASASLDSFVRVFDVDTN----------ASIATLEASPSEVWQMQFDPKGTTLAVAGGGSASVKLW  130 (315)
Q Consensus        61 ~~v~~~~~~~~g~~l~s~~~d~~i~~w~~~~~----------~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~~  130 (315)
                      ..|.+-+++|.++++++|..+|+|-+..++..          ..+.....|..+++.++|+.+   ++++| +||.|+-|
T Consensus        11 ~tvf~qa~sp~~~~l~agn~~G~iav~sl~sl~s~sa~~~gk~~iv~eqahdgpiy~~~f~d~---~Lls~-gdG~V~gw   86 (325)
T KOG0649|consen   11 NTVFAQAISPSKQYLFAGNLFGDIAVLSLKSLDSGSAEPPGKLKIVPEQAHDGPIYYLAFHDD---FLLSG-GDGLVYGW   86 (325)
T ss_pred             HHHHHHhhCCcceEEEEecCCCeEEEEEehhhhccccCCCCCcceeeccccCCCeeeeeeehh---heeec-cCceEEEe
Confidence            34666788999999999999999999998642          133455788999999999843   44555 45999999


Q ss_pred             ecCCcce------eeeecCCCCCCCCCCccCCCCcceEEEEECCCCCEEEEecCCCcEEEEEcccceeeeeecCCccceE
Q 021247          131 DTATWNL------IATLSIPRPEGLKPTDKSSSKKFVLSVAWSPDGRRIACGSMDGTISVFDVTRAKFLHHLEGHFMPVR  204 (315)
Q Consensus       131 d~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~s~dg~i~i~d~~~~~~~~~~~~~~~~v~  204 (315)
                      .-+....      +.....|...+      ...-..|+.|-+.|..+-++.++.|+.++.||+++++....+++|+..+.
T Consensus        87 ~W~E~~es~~~K~lwe~~~P~~~~------~~evPeINam~ldP~enSi~~AgGD~~~y~~dlE~G~i~r~~rGHtDYvH  160 (325)
T KOG0649|consen   87 EWNEEEESLATKRLWEVKIPMQVD------AVEVPEINAMWLDPSENSILFAGGDGVIYQVDLEDGRIQREYRGHTDYVH  160 (325)
T ss_pred             eehhhhhhccchhhhhhcCccccC------cccCCccceeEeccCCCcEEEecCCeEEEEEEecCCEEEEEEcCCcceee
Confidence            7654322      11111111111      11223488999998776666666999999999999999999999999999


Q ss_pred             EEEEcCCCCcEEEEEeCCCeEEEEeCCCCeeEEEee---------cc-cccEEEEEEcCCCCeEEEEeCCCcEEEEecCc
Q 021247          205 SLVYSPVDPRVLFSASDDTHVHMYDAEGKSLVTAMS---------GH-ASWVLSVDASPDGAAITTGSSDRTVKLWDLNM  274 (315)
Q Consensus       205 ~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~---------~~-~~~i~~~~~~~~~~~l~s~~~d~~i~iwd~~~  274 (315)
                      ++.--... ..+++|+.||++++||.++++.++.+.         .| ..||.+++.+.+  +|+. +..-.+.+|.+++
T Consensus       161 ~vv~R~~~-~qilsG~EDGtvRvWd~kt~k~v~~ie~yk~~~~lRp~~g~wigala~~ed--WlvC-GgGp~lslwhLrs  236 (325)
T KOG0649|consen  161 SVVGRNAN-GQILSGAEDGTVRVWDTKTQKHVSMIEPYKNPNLLRPDWGKWIGALAVNED--WLVC-GGGPKLSLWHLRS  236 (325)
T ss_pred             eeeecccC-cceeecCCCccEEEEeccccceeEEeccccChhhcCcccCceeEEEeccCc--eEEe-cCCCceeEEeccC
Confidence            99874433 468899999999999999988776553         22 356888877654  6664 4566799999999


Q ss_pred             cceehcccccccceEEEEEeeCCCEEEEEeCCCcEEEeecC
Q 021247          275 RAAMQSMTNHTDQVWGVSFRPLGGRVVSVSDDKSISLYEYS  315 (315)
Q Consensus       275 ~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~i~i~~~~  315 (315)
                      .++..+++- ...+..+.|-.+  .++++|....+.-|.++
T Consensus       237 se~t~vfpi-pa~v~~v~F~~d--~vl~~G~g~~v~~~~l~  274 (325)
T KOG0649|consen  237 SESTCVFPI-PARVHLVDFVDD--CVLIGGEGNHVQSYTLN  274 (325)
T ss_pred             CCceEEEec-ccceeEeeeecc--eEEEeccccceeeeeec
Confidence            888877653 357778888765  78889888888877763

>KOG1334 consensus WD40 repeat protein [General function prediction only]

Probab=99.84  E-value=8.8e-20  Score=149.23  Aligned_cols=300  Identities=20%  Similarity=0.250  Sum_probs=224.8

Q ss_pred             ccchhhhhhccccceEEEEEeecCCCCCcEEEEeeCCCcEEEEcCCCCcc-eeeccccccceEEEEeCCC--CCEEEEee
Q 021247            3 FAGLKSVENAHEESVWAVTWVPATETRPALLLTGSLDETVKLWRPDDMQL-ERTNTGHCLGVVSVAAHPS--GIIAASAS   79 (315)
Q Consensus         3 ~~~~~~~~~~h~~~v~~v~~~~~~~~~~~~l~sgs~d~~v~~w~~~~~~~-~~~~~~h~~~v~~~~~~~~--g~~l~s~~   79 (315)
                      .++++.-+..|.+.|+.|.|...+.    .|+|||.|..|.+||....+. .....||..-|....|-|.  ..-+++.+
T Consensus       131 r~~l~~kL~~H~GcVntV~FN~~Gd----~l~SgSDD~~vv~WdW~~~~~~l~f~SGH~~NvfQaKFiP~s~d~ti~~~s  206 (559)
T KOG1334|consen  131 RLRLQKKLNKHKGCVNTVHFNQRGD----VLASGSDDLQVVVWDWVSGSPKLSFESGHCNNVFQAKFIPFSGDRTIVTSS  206 (559)
T ss_pred             HhhhhhcccCCCCccceeeecccCc----eeeccCccceEEeehhhccCcccccccccccchhhhhccCCCCCcCceecc
Confidence            3456667889999999999988775    699999999999999865543 3445789998888888774  36788899


Q ss_pred             CCCeEEEEECCCCcee---EEeeCCcccEEEEEECCCCCeEEEEecCCCeEEEEecCCcceeeeecCCCCCCCCCCccCC
Q 021247           80 LDSFVRVFDVDTNASI---ATLEASPSEVWQMQFDPKGTTLAVAGGGSASVKLWDTATWNLIATLSIPRPEGLKPTDKSS  156 (315)
Q Consensus        80 ~d~~i~~w~~~~~~~~---~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~  156 (315)
                      .||.+|+=.+.....+   ..+..|.++|..++..|...+-+.+++.|+.+.-+|++....-..+...+..       ..
T Consensus       207 ~dgqvr~s~i~~t~~~e~t~rl~~h~g~vhklav~p~sp~~f~S~geD~~v~~~Dlr~~~pa~~~~cr~~~-------~~  279 (559)
T KOG1334|consen  207 RDGQVRVSEILETGYVENTKRLAPHEGPVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQDVPAEKFVCREAD-------EK  279 (559)
T ss_pred             ccCceeeeeeccccceecceecccccCccceeeecCCCCCcccccccccceeeeeeccCCccceeeeeccC-------Cc
Confidence            9999998877654332   3456688999999999999888899999999999999876544333211110       01


Q ss_pred             CCcceEEEEECCCC-CEEEEecCCCcEEEEEccccee------eeeecCC------ccceEEEEEcCCCCcEEEEEeCCC
Q 021247          157 SKKFVLSVAWSPDG-RRIACGSMDGTISVFDVTRAKF------LHHLEGH------FMPVRSLVYSPVDPRVLFSASDDT  223 (315)
Q Consensus       157 ~~~~i~~~~~~~~~-~~l~~~s~dg~i~i~d~~~~~~------~~~~~~~------~~~v~~~~~~~~~~~~l~s~~~d~  223 (315)
                      ..-....++.+|.. +++++|+.|..+++||.+.-..      +.++..|      .-.|+++.|+..++. |+++-.|-
T Consensus       280 ~~v~L~~Ia~~P~nt~~faVgG~dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~v~ITgl~Ysh~~sE-lLaSYnDe  358 (559)
T KOG1334|consen  280 ERVGLYTIAVDPRNTNEFAVGGSDQFARVYDQRRIDKEENNGVLDKFCPHHLVEDDPVNITGLVYSHDGSE-LLASYNDE  358 (559)
T ss_pred             cceeeeeEecCCCCccccccCChhhhhhhhcccchhhccccchhhhcCCccccccCcccceeEEecCCccc-eeeeeccc
Confidence            11235788889854 4889999999999999764322      2222222      235789999974554 55555666


Q ss_pred             eEEEEeCC--CC----------eeEEE-eecccc--cEEEEE-EcCCCCeEEEEeCCCcEEEEecCccceehcccccccc
Q 021247          224 HVHMYDAE--GK----------SLVTA-MSGHAS--WVLSVD-ASPDGAAITTGSSDRTVKLWDLNMRAAMQSMTNHTDQ  287 (315)
Q Consensus       224 ~i~~wd~~--~~----------~~~~~-~~~~~~--~i~~~~-~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~  287 (315)
                      .|+++...  .+          ..+.. +.+|..  .|-.+- |-|...++++|+.-|.|.||+-.+++.+.-+.+...-
T Consensus       359 ~IYLF~~~~~~G~~p~~~s~~~~~~k~vYKGHrN~~TVKgVNFfGPrsEyVvSGSDCGhIFiW~K~t~eii~~MegDr~V  438 (559)
T KOG1334|consen  359 DIYLFNKSMGDGSEPDPSSPREQYVKRVYKGHRNSRTVKGVNFFGPRSEYVVSGSDCGHIFIWDKKTGEIIRFMEGDRHV  438 (559)
T ss_pred             ceEEeccccccCCCCCCCcchhhccchhhcccccccccceeeeccCccceEEecCccceEEEEecchhHHHHHhhcccce
Confidence            78888532  12          22223 677743  355555 5788899999999999999999999999989887779


Q ss_pred             eEEEEEeeCCCEEEEEeCCCcEEEeec
Q 021247          288 VWGVSFRPLGGRVVSVSDDKSISLYEY  314 (315)
Q Consensus       288 v~~~~~s~~~~~l~s~~~d~~i~i~~~  314 (315)
                      |+++.=+|--..||+.|.|..|+||..
T Consensus       439 VNCLEpHP~~PvLAsSGid~DVKIWTP  465 (559)
T KOG1334|consen  439 VNCLEPHPHLPVLASSGIDHDVKIWTP  465 (559)
T ss_pred             EeccCCCCCCchhhccCCccceeeecC
Confidence            999999999999999999999999964

>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]

Probab=99.84  E-value=1.4e-19  Score=149.88  Aligned_cols=209  Identities=19%  Similarity=0.267  Sum_probs=162.2

Q ss_pred             CCcEEEEeeCCCcEEEEcCCCCcceeeccccccceEEEEeCCCCCEEEEeeCCCeEEEEECCCCceeEEeeCCcccEEEE
Q 021247           29 RPALLLTGSLDETVKLWRPDDMQLERTNTGHCLGVVSVAAHPSGIIAASASLDSFVRVFDVDTNASIATLEASPSEVWQM  108 (315)
Q Consensus        29 ~~~~l~sgs~d~~v~~w~~~~~~~~~~~~~h~~~v~~~~~~~~g~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~v~~~  108 (315)
                      ....|+.++.||.+.+.+- ..+..+....|.+++.+-.|+|+|.-|++++.||.|++|.- ++....++.....+|.++
T Consensus        74 ~~d~~~i~s~DGkf~il~k-~~rVE~sv~AH~~A~~~gRW~~dGtgLlt~GEDG~iKiWSr-sGMLRStl~Q~~~~v~c~  151 (737)
T KOG1524|consen   74 GSDTLLICSNDGRFVILNK-SARVERSISAHAAAISSGRWSPDGAGLLTAGEDGVIKIWSR-SGMLRSTVVQNEESIRCA  151 (737)
T ss_pred             CcceEEEEcCCceEEEecc-cchhhhhhhhhhhhhhhcccCCCCceeeeecCCceEEEEec-cchHHHHHhhcCceeEEE
Confidence            3457899999999999863 56677888999999999999999999999999999999994 555555666677889999


Q ss_pred             EECCCCCeEEEEecCCCeEEEEecCCcceeeeecCCCCCCCCCCccCCCCcceEEEEECCCCCEEEEecCCCcEEEEEcc
Q 021247          109 QFDPKGTTLAVAGGGSASVKLWDTATWNLIATLSIPRPEGLKPTDKSSSKKFVLSVAWSPDGRRIACGSMDGTISVFDVT  188 (315)
Q Consensus       109 ~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~s~dg~i~i~d~~  188 (315)
                      +|.|+.+.++++.++.  +.+=-+.             .+.++..-..|...|.++.|++.++.+++|++|-..++||- 
T Consensus       152 ~W~p~S~~vl~c~g~h--~~IKpL~-------------~n~k~i~WkAHDGiiL~~~W~~~s~lI~sgGED~kfKvWD~-  215 (737)
T KOG1524|consen  152 RWAPNSNSIVFCQGGH--ISIKPLA-------------ANSKIIRWRAHDGLVLSLSWSTQSNIIASGGEDFRFKIWDA-  215 (737)
T ss_pred             EECCCCCceEEecCCe--EEEeecc-------------cccceeEEeccCcEEEEeecCccccceeecCCceeEEeecc-
Confidence            9999998887765533  3222211             12233334567778999999999999999999999999996 


Q ss_pred             cceeeeeecCCccceEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCeeEEEeecccccEEEEEEcCCCCeEEEEeCCCcEE
Q 021247          189 RAKFLHHLEGHFMPVRSLVYSPVDPRVLFSASDDTHVHMYDAEGKSLVTAMSGHASWVLSVDASPDGAAITTGSSDRTVK  268 (315)
Q Consensus       189 ~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~d~~i~  268 (315)
                      .|+.+..-..|..+|++++|.|+  ..++.++.. +++           .-....+.|..++||+||..++.|+..|.+.
T Consensus       216 ~G~~Lf~S~~~ey~ITSva~npd--~~~~v~S~n-t~R-----------~~~p~~GSifnlsWS~DGTQ~a~gt~~G~v~  281 (737)
T KOG1524|consen  216 QGANLFTSAAEEYAITSVAFNPE--KDYLLWSYN-TAR-----------FSSPRVGSIFNLSWSADGTQATCGTSTGQLI  281 (737)
T ss_pred             cCcccccCChhccceeeeeeccc--cceeeeeee-eee-----------ecCCCccceEEEEEcCCCceeeccccCceEE
Confidence            46667777789999999999994  444444432 333           1123467799999999999999999999765


Q ss_pred             E
Q 021247          269 L  269 (315)
Q Consensus       269 i  269 (315)
                      +
T Consensus       282 ~  282 (737)
T KOG1524|consen  282 V  282 (737)
T ss_pred             E
Confidence            4

>KOG4227 consensus WD40 repeat protein [General function prediction only]

Probab=99.84  E-value=1.9e-18  Score=138.14  Aligned_cols=286  Identities=19%  Similarity=0.233  Sum_probs=200.4

Q ss_pred             hhccccceEEEEEeecCCCCCcEEEEeeCCCcEEEEcCCCC------cceeec-cccccceEEEEeCCCCCEEEEeeCCC
Q 021247           10 ENAHEESVWAVTWVPATETRPALLLTGSLDETVKLWRPDDM------QLERTN-TGHCLGVVSVAAHPSGIIAASASLDS   82 (315)
Q Consensus        10 ~~~h~~~v~~v~~~~~~~~~~~~l~sgs~d~~v~~w~~~~~------~~~~~~-~~h~~~v~~~~~~~~g~~l~s~~~d~   82 (315)
                      +.+|.+.|+++.|+..+.    .|++|+.|..+++|+++..      +.+... ..|..-|.++.|...+..+.+|+.++
T Consensus        52 ~~~H~GCiNAlqFS~N~~----~L~SGGDD~~~~~W~~de~~~~k~~KPI~~~~~~H~SNIF~L~F~~~N~~~~SG~~~~  127 (609)
T KOG4227|consen   52 VREHTGCINALQFSHNDR----FLASGGDDMHGRVWNVDELMVRKTPKPIGVMEHPHRSNIFSLEFDLENRFLYSGERWG  127 (609)
T ss_pred             hhhhccccceeeeccCCe----EEeecCCcceeeeechHHHHhhcCCCCceeccCccccceEEEEEccCCeeEecCCCcc
Confidence            579999999999998644    7999999999999987532      222222 23557899999999999999999999


Q ss_pred             eEEEEECCCCceeEEeeCC--cccEEEEEECCCCCeEEEEecCCCeEEEEecCCcc-eeeeecCCCCCCCCCCccCCCCc
Q 021247           83 FVRVFDVDTNASIATLEAS--PSEVWQMQFDPKGTTLAVAGGGSASVKLWDTATWN-LIATLSIPRPEGLKPTDKSSSKK  159 (315)
Q Consensus        83 ~i~~w~~~~~~~~~~~~~~--~~~v~~~~~~~~~~~~~~~~~~d~~i~~~d~~~~~-~~~~~~~~~~~~~~~~~~~~~~~  159 (315)
                      +|.+-|+++.+.+..+...  .+.|+.+..+|..+.+ ++.+.++.|.+||.+... .+..+. +          .....
T Consensus       128 ~VI~HDiEt~qsi~V~~~~~~~~~VY~m~~~P~DN~~-~~~t~~~~V~~~D~Rd~~~~~~~~~-~----------AN~~~  195 (609)
T KOG4227|consen  128 TVIKHDIETKQSIYVANENNNRGDVYHMDQHPTDNTL-IVVTRAKLVSFIDNRDRQNPISLVL-P----------ANSGK  195 (609)
T ss_pred             eeEeeecccceeeeeecccCcccceeecccCCCCceE-EEEecCceEEEEeccCCCCCCceee-e----------cCCCc
Confidence            9999999998887665432  2489999999997754 566789999999998633 111110 0          00112


Q ss_pred             ceEEEEECCCC-CEEEEecCCCcEEEEEccccee-eee------ecCCccceEEEEEcCCCCcEEEEEeCCCeEEEEeCC
Q 021247          160 FVLSVAWSPDG-RRIACGSMDGTISVFDVTRAKF-LHH------LEGHFMPVRSLVYSPVDPRVLFSASDDTHVHMYDAE  231 (315)
Q Consensus       160 ~i~~~~~~~~~-~~l~~~s~dg~i~i~d~~~~~~-~~~------~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~  231 (315)
                      ...++-|+|.. .+|++.+..+.+-+||.+.... +..      +......-..+.|+|. +..+++--....-.+||.-
T Consensus       196 ~F~t~~F~P~~P~Li~~~~~~~G~~~~D~R~~~~~~~~~~~~~~L~~~~~~~M~~~~~~~-G~Q~msiRR~~~P~~~D~~  274 (609)
T KOG4227|consen  196 NFYTAEFHPETPALILVNSETGGPNVFDRRMQARPVYQRSMFKGLPQENTEWMGSLWSPS-GNQFMSIRRGKCPLYFDFI  274 (609)
T ss_pred             cceeeeecCCCceeEEeccccCCCCceeeccccchHHhhhccccCcccchhhhheeeCCC-CCeehhhhccCCCEEeeee
Confidence            25678899964 4677888889999999875432 111      1111223367789984 5556555555555667765


Q ss_pred             CCeeEEEeeccc--c-----cEEEEEEcCCCCeEEEEeCCCcEEEEecCcc----c-------------------eehcc
Q 021247          232 GKSLVTAMSGHA--S-----WVLSVDASPDGAAITTGSSDRTVKLWDLNMR----A-------------------AMQSM  281 (315)
Q Consensus       232 ~~~~~~~~~~~~--~-----~i~~~~~~~~~~~l~s~~~d~~i~iwd~~~~----~-------------------~~~~~  281 (315)
                      ...+...-..|+  +     .+.+++|-.+ ..+++|+.+-.|++|.+...    .                   .+..+
T Consensus       275 S~R~~V~k~D~N~~GY~N~~T~KS~~F~~D-~~v~tGSD~~~i~~WklP~~~ds~G~~~IG~~~~~~~~~~~i~~~~~VL  353 (609)
T KOG4227|consen  275 SQRCFVLKSDHNPNGYCNIKTIKSMTFIDD-YTVATGSDHWGIHIWKLPRANDSYGFTQIGHDEEEMPSEIFIEKELTVL  353 (609)
T ss_pred             cccceeEeccCCCCcceeeeeeeeeeeecc-eeeeccCcccceEEEecCCCccccCccccCcchhhCchhheecceeEEE
Confidence            533322222222  2     2445666644 45899999999999987421    1                   12345


Q ss_pred             cccccceEEEEEeeCCCEEEEEeCCCcEEEee
Q 021247          282 TNHTDQVWGVSFRPLGGRVVSVSDDKSISLYE  313 (315)
Q Consensus       282 ~~~~~~v~~~~~s~~~~~l~s~~~d~~i~i~~  313 (315)
                      .+|..-++.|.|+|...+|++.|-++.++||.
T Consensus       354 rGHRSv~NQVRF~~H~~~l~SSGVE~~~KlWS  385 (609)
T KOG4227|consen  354 RGHRSVPNQVRFSQHNNLLVSSGVENSFKLWS  385 (609)
T ss_pred             ecccccccceeecCCcceEeccchhhheeccc
Confidence            78888899999999999999999999999996

>PRK01742 tolB translocation protein TolB; Provisional

Probab=99.83  E-value=1.6e-18  Score=150.41  Aligned_cols=235  Identities=21%  Similarity=0.186  Sum_probs=159.6

Q ss_pred             CCcEEEEcCCCCcceeeccccccceEEEEeCCCCCEEEEeeCC---CeEEEEECCCCceeEEeeCCcccEEEEEECCCCC
Q 021247           39 DETVKLWRPDDMQLERTNTGHCLGVVSVAAHPSGIIAASASLD---SFVRVFDVDTNASIATLEASPSEVWQMQFDPKGT  115 (315)
Q Consensus        39 d~~v~~w~~~~~~~~~~~~~h~~~v~~~~~~~~g~~l~s~~~d---~~i~~w~~~~~~~~~~~~~~~~~v~~~~~~~~~~  115 (315)
                      +..|.+||.+... .+.+..|...+.+..|+|+|+.++.++.+   ..|++||+.+++... +..........+|+|+|+
T Consensus       183 ~~~i~i~d~dg~~-~~~lt~~~~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~~-l~~~~g~~~~~~wSPDG~  260 (429)
T PRK01742        183 PYEVRVADYDGFN-QFIVNRSSQPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARKV-VASFRGHNGAPAFSPDGS  260 (429)
T ss_pred             eEEEEEECCCCCC-ceEeccCCCccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCceEE-EecCCCccCceeECCCCC
Confidence            4689999986554 34556677789999999999999877654   469999998875422 222223344689999999


Q ss_pred             eEEEEecCCCeEEEE--ecCCcceeeeecCCCCCCCCCCccCCCCcceEEEEECCCCCEEEEec-CCCcEEEEEcccc-e
Q 021247          116 TLAVAGGGSASVKLW--DTATWNLIATLSIPRPEGLKPTDKSSSKKFVLSVAWSPDGRRIACGS-MDGTISVFDVTRA-K  191 (315)
Q Consensus       116 ~~~~~~~~d~~i~~~--d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~s-~dg~i~i~d~~~~-~  191 (315)
                      .++++...++.+.+|  |+.+++.. .+.             .+...+....|+|+|+.|+..+ .++...+|++... .
T Consensus       261 ~La~~~~~~g~~~Iy~~d~~~~~~~-~lt-------------~~~~~~~~~~wSpDG~~i~f~s~~~g~~~I~~~~~~~~  326 (429)
T PRK01742        261 RLAFASSKDGVLNIYVMGANGGTPS-QLT-------------SGAGNNTEPSWSPDGQSILFTSDRSGSPQVYRMSASGG  326 (429)
T ss_pred             EEEEEEecCCcEEEEEEECCCCCeE-eec-------------cCCCCcCCEEECCCCCEEEEEECCCCCceEEEEECCCC
Confidence            888776667765555  55544322 111             1122356789999999877554 5677888876432 1


Q ss_pred             eeeeecCCccceEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCeeEEEeecccccEEEEEEcCCCCeEEEEeCCCcEEEEe
Q 021247          192 FLHHLEGHFMPVRSLVYSPVDPRVLFSASDDTHVHMYDAEGKSLVTAMSGHASWVLSVDASPDGAAITTGSSDRTVKLWD  271 (315)
Q Consensus       192 ~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~d~~i~iwd  271 (315)
                      ....+ .+..  ....|+| +++.++..+.++ +.+||+.++........+  ....+.|+|+|++|+.++.++.+.+|+
T Consensus       327 ~~~~l-~~~~--~~~~~Sp-DG~~ia~~~~~~-i~~~Dl~~g~~~~lt~~~--~~~~~~~sPdG~~i~~~s~~g~~~~l~  399 (429)
T PRK01742        327 GASLV-GGRG--YSAQISA-DGKTLVMINGDN-VVKQDLTSGSTEVLSSTF--LDESPSISPNGIMIIYSSTQGLGKVLQ  399 (429)
T ss_pred             CeEEe-cCCC--CCccCCC-CCCEEEEEcCCC-EEEEECCCCCeEEecCCC--CCCCceECCCCCEEEEEEcCCCceEEE
Confidence            12222 3332  3567898 555666666655 556998877544322222  234678999999999999999998887


Q ss_pred             cC--ccceehcccccccceEEEEEeeC
Q 021247          272 LN--MRAAMQSMTNHTDQVWGVSFRPL  296 (315)
Q Consensus       272 ~~--~~~~~~~~~~~~~~v~~~~~s~~  296 (315)
                      +.  .++....+..|.+.+...+|||-
T Consensus       400 ~~~~~G~~~~~l~~~~g~~~~p~wsp~  426 (429)
T PRK01742        400 LVSADGRFKARLPGSDGQVKFPAWSPY  426 (429)
T ss_pred             EEECCCCceEEccCCCCCCCCcccCCC
Confidence            63  46667777788888899999985

>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]

Probab=99.83  E-value=1.5e-18  Score=143.84  Aligned_cols=263  Identities=16%  Similarity=0.246  Sum_probs=184.8

Q ss_pred             hccccceEEEEEeecCCCCCcEEEEeeCCCcEEEEcCCCCcceeecccccc-ceEEEE-------eCCCCCEEEEeeCCC
Q 021247           11 NAHEESVWAVTWVPATETRPALLLTGSLDETVKLWRPDDMQLERTNTGHCL-GVVSVA-------AHPSGIIAASASLDS   82 (315)
Q Consensus        11 ~~h~~~v~~v~~~~~~~~~~~~l~sgs~d~~v~~w~~~~~~~~~~~~~h~~-~v~~~~-------~~~~g~~l~s~~~d~   82 (315)
                      +.|.+.|-||.|+....     ++..+.|..+.+|.-..........-... -.+.+.       -......++.++.||
T Consensus        11 ~r~~e~vc~v~w~~~ee-----i~~~~dDh~~~~~~~~~~~s~~~~~~p~df~pt~~h~~~rs~~~g~~~d~~~i~s~DG   85 (737)
T KOG1524|consen   11 NRNSEKVCCVDWSSNEE-----IYFVSDDHQIFKWSDVSRDSVEVAKLPDDFVPTDMHLGGRSSGGGKGSDTLLICSNDG   85 (737)
T ss_pred             cccceeEEeecccccce-----EEEeccCceEEEeecccchhhhhhhCCcccCCccccccccccCCCCCcceEEEEcCCc
Confidence            47888899999987543     56667777776665322221111110000 011111       112335778889999


Q ss_pred             eEEEEECCCCceeEEeeCCcccEEEEEECCCCCeEEEEecCCCeEEEEecCCcceeeeecCCCCCCCCCCccCCCCcceE
Q 021247           83 FVRVFDVDTNASIATLEASPSEVWQMQFDPKGTTLAVAGGGSASVKLWDTATWNLIATLSIPRPEGLKPTDKSSSKKFVL  162 (315)
Q Consensus        83 ~i~~w~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~  162 (315)
                      .+.+.+- .++....+..|.+.+.+-+|+|+|.-+ ++.+.||.|++|.-..+ +..++             .+....|.
T Consensus        86 kf~il~k-~~rVE~sv~AH~~A~~~gRW~~dGtgL-lt~GEDG~iKiWSrsGM-LRStl-------------~Q~~~~v~  149 (737)
T KOG1524|consen   86 RFVILNK-SARVERSISAHAAAISSGRWSPDGAGL-LTAGEDGVIKIWSRSGM-LRSTV-------------VQNEESIR  149 (737)
T ss_pred             eEEEecc-cchhhhhhhhhhhhhhhcccCCCCcee-eeecCCceEEEEeccch-HHHHH-------------hhcCceeE
Confidence            9998774 455566788899999999999999876 56789999999975421 11111             12334599


Q ss_pred             EEEECCCCCEEEEecCCCcEEEEEcccceeeeeecCCccceEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCeeEEEeecc
Q 021247          163 SVAWSPDGRRIACGSMDGTISVFDVTRAKFLHHLEGHFMPVRSLVYSPVDPRVLFSASDDTHVHMYDAEGKSLVTAMSGH  242 (315)
Q Consensus       163 ~~~~~~~~~~l~~~s~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~  242 (315)
                      |++|.|+++.++-+ ..+.+.|=.+..+..+-..+.|.+-|.++.|+| ...++++|+.|-..++||..+.. +.....|
T Consensus       150 c~~W~p~S~~vl~c-~g~h~~IKpL~~n~k~i~WkAHDGiiL~~~W~~-~s~lI~sgGED~kfKvWD~~G~~-Lf~S~~~  226 (737)
T KOG1524|consen  150 CARWAPNSNSIVFC-QGGHISIKPLAANSKIIRWRAHDGLVLSLSWST-QSNIIASGGEDFRFKIWDAQGAN-LFTSAAE  226 (737)
T ss_pred             EEEECCCCCceEEe-cCCeEEEeecccccceeEEeccCcEEEEeecCc-cccceeecCCceeEEeecccCcc-cccCChh
Confidence            99999998776655 345777777777777778899999999999998 56799999999999999987653 4455678


Q ss_pred             cccEEEEEEcCCCCeEEEEeCCCcEEEEecCccceehcccccccceEEEEEeeCCCEEEEEeCCCcEE
Q 021247          243 ASWVLSVDASPDGAAITTGSSDRTVKLWDLNMRAAMQSMTNHTDQVWGVSFRPLGGRVVSVSDDKSIS  310 (315)
Q Consensus       243 ~~~i~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~i~  310 (315)
                      .-+|++++|+|+ ..++.++.+ +.|         +.  ....+.|..++|||||..++.|...|.+.
T Consensus       227 ey~ITSva~npd-~~~~v~S~n-t~R---------~~--~p~~GSifnlsWS~DGTQ~a~gt~~G~v~  281 (737)
T KOG1524|consen  227 EYAITSVAFNPE-KDYLLWSYN-TAR---------FS--SPRVGSIFNLSWSADGTQATCGTSTGQLI  281 (737)
T ss_pred             ccceeeeeeccc-cceeeeeee-eee---------ec--CCCccceEEEEEcCCCceeeccccCceEE
Confidence            889999999999 555655532 222         11  12347899999999999999998888664

>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]

Probab=99.83  E-value=7.3e-19  Score=149.22  Aligned_cols=245  Identities=17%  Similarity=0.315  Sum_probs=183.9

Q ss_pred             chhhhhhccccceEEEEEeecCCCCCcEEEEeeCCCcEEEEcCCCCcceeeccccccceEEEEeCCCCCEEEEeeCCCeE
Q 021247            5 GLKSVENAHEESVWAVTWVPATETRPALLLTGSLDETVKLWRPDDMQLERTNTGHCLGVVSVAAHPSGIIAASASLDSFV   84 (315)
Q Consensus         5 ~~~~~~~~h~~~v~~v~~~~~~~~~~~~l~sgs~d~~v~~w~~~~~~~~~~~~~h~~~v~~~~~~~~g~~l~s~~~d~~i   84 (315)
                      ++-..+++|.+.|+||+|+.+++    .++||+.|..|.+|++.-....  ...|.+.|.|+.|+|-.+.+++++-.. .
T Consensus        44 ~llqtLKgHKDtVycVAys~dGk----rFASG~aDK~VI~W~~klEG~L--kYSH~D~IQCMsFNP~~h~LasCsLsd-F  116 (1081)
T KOG1538|consen   44 TLLQPLKGHKDTVYCVAYAKDGK----RFASGSADKSVIIWTSKLEGIL--KYSHNDAIQCMSFNPITHQLASCSLSD-F  116 (1081)
T ss_pred             ccccccccccceEEEEEEccCCc----eeccCCCceeEEEeccccccee--eeccCCeeeEeecCchHHHhhhcchhh-c
Confidence            34456789999999999999887    6999999999999976533332  246999999999999999999987653 5


Q ss_pred             EEEECCCCceeEEeeCCcccEEEEEECCCCCeEEEEecCCCeEEEEecCCcceeeeecCCCCCCCCCCccCCCCcceEEE
Q 021247           85 RVFDVDTNASIATLEASPSEVWQMQFDPKGTTLAVAGGGSASVKLWDTATWNLIATLSIPRPEGLKPTDKSSSKKFVLSV  164 (315)
Q Consensus        85 ~~w~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~  164 (315)
                      -+|......... .+ ....+.+++|..+|.++ +-|..+|+|.+-+.. ++..  ..+.++.        +...+|.++
T Consensus       117 glWS~~qK~V~K-~k-ss~R~~~CsWtnDGqyl-alG~~nGTIsiRNk~-gEek--~~I~Rpg--------g~Nspiwsi  182 (1081)
T KOG1538|consen  117 GLWSPEQKSVSK-HK-SSSRIICCSWTNDGQYL-ALGMFNGTISIRNKN-GEEK--VKIERPG--------GSNSPIWSI  182 (1081)
T ss_pred             cccChhhhhHHh-hh-hheeEEEeeecCCCcEE-EEeccCceEEeecCC-CCcc--eEEeCCC--------CCCCCceEE
Confidence            678766543321 11 23568899999999876 457889999887432 2222  2222322        234569999


Q ss_pred             EECCCC-----CEEEEecCCCcEEEEEcccceeeeeecCCccceEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCeeEEEe
Q 021247          165 AWSPDG-----RRIACGSMDGTISVFDVTRAKFLHHLEGHFMPVRSLVYSPVDPRVLFSASDDTHVHMYDAEGKSLVTAM  239 (315)
Q Consensus       165 ~~~~~~-----~~l~~~s~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~  239 (315)
                      +|+|..     ..+++.....++.+|.+. |+.+.+-+.-.....++.+.| ++.+++.|+.|+.+++|..+ +-.+.++
T Consensus       183 ~~~p~sg~G~~di~aV~DW~qTLSFy~Ls-G~~Igk~r~L~FdP~CisYf~-NGEy~LiGGsdk~L~~fTR~-GvrLGTv  259 (1081)
T KOG1538|consen  183 CWNPSSGEGRNDILAVADWGQTLSFYQLS-GKQIGKDRALNFDPCCISYFT-NGEYILLGGSDKQLSLFTRD-GVRLGTV  259 (1081)
T ss_pred             EecCCCCCCccceEEEEeccceeEEEEec-ceeecccccCCCCchhheecc-CCcEEEEccCCCceEEEeec-CeEEeec
Confidence            999953     467777777788888874 555554444444567888887 78899999999999999644 4456666


Q ss_pred             ecccccEEEEEEcCCCCeEEEEeCCCcEEEEecC
Q 021247          240 SGHASWVLSVDASPDGAAITTGSSDRTVKLWDLN  273 (315)
Q Consensus       240 ~~~~~~i~~~~~~~~~~~l~s~~~d~~i~iwd~~  273 (315)
                      .....||+.+...|++++++.|+.||+|-.|++.
T Consensus       260 g~~D~WIWtV~~~PNsQ~v~~GCqDGTiACyNl~  293 (1081)
T KOG1538|consen  260 GEQDSWIWTVQAKPNSQYVVVGCQDGTIACYNLI  293 (1081)
T ss_pred             cccceeEEEEEEccCCceEEEEEccCeeehhhhH
Confidence            6678899999999999999999999999999874

>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]

Probab=99.82  E-value=1.3e-18  Score=138.93  Aligned_cols=209  Identities=22%  Similarity=0.361  Sum_probs=157.6

Q ss_pred             hhhhccccceEEEEEeecCCCCCcEEEEeeCCCcEEEEcCCCCcc-------eeeccccccceEEEEeCCCC-CEEEEee
Q 021247            8 SVENAHEESVWAVTWVPATETRPALLLTGSLDETVKLWRPDDMQL-------ERTNTGHCLGVVSVAAHPSG-IIAASAS   79 (315)
Q Consensus         8 ~~~~~h~~~v~~v~~~~~~~~~~~~l~sgs~d~~v~~w~~~~~~~-------~~~~~~h~~~v~~~~~~~~g-~~l~s~~   79 (315)
                      +...||+.+|..++|.|....   .|||||.|.+|.+|......+       ...+.||...|..+.|||.- +.|++++
T Consensus        75 P~v~GHt~~vLDi~w~PfnD~---vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L~gH~rrVg~V~wHPtA~NVLlsag  151 (472)
T KOG0303|consen   75 PLVCGHTAPVLDIDWCPFNDC---VIASGSEDTKVMVWQIPENGLTRDLTEPVVELYGHQRRVGLVQWHPTAPNVLLSAG  151 (472)
T ss_pred             CCccCccccccccccCccCCc---eeecCCCCceEEEEECCCcccccCcccceEEEeecceeEEEEeecccchhhHhhcc
Confidence            446799999999999997653   799999999999998643322       45678999999999999976 6889999


Q ss_pred             CCCeEEEEECCCCceeEEeeCCcccEEEEEECCCCCeEEEEecCCCeEEEEecCCcceeeeecCCCCCCCCCCccCCCCc
Q 021247           80 LDSFVRVFDVDTNASIATLEASPSEVWQMQFDPKGTTLAVAGGGSASVKLWDTATWNLIATLSIPRPEGLKPTDKSSSKK  159 (315)
Q Consensus        80 ~d~~i~~w~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~  159 (315)
                      .|.+|.+||+.++....+++ |++-|++++|+-+|+.+ ++...|..|+|||.++++.+..-..+.  +.+         
T Consensus       152 ~Dn~v~iWnv~tgeali~l~-hpd~i~S~sfn~dGs~l-~TtckDKkvRv~dpr~~~~v~e~~~he--G~k---------  218 (472)
T KOG0303|consen  152 SDNTVSIWNVGTGEALITLD-HPDMVYSMSFNRDGSLL-CTTCKDKKVRVIDPRRGTVVSEGVAHE--GAK---------  218 (472)
T ss_pred             CCceEEEEeccCCceeeecC-CCCeEEEEEeccCCcee-eeecccceeEEEcCCCCcEeeeccccc--CCC---------
Confidence            99999999999999888888 99999999999999865 677899999999999988876542211  111         


Q ss_pred             ceEEEEECCCCCEEEEec---CCCcEEEEEcccce---eeeeecCCccceEEEEEcCCCCcEEEEEeCCCeEEEEeCCCC
Q 021247          160 FVLSVAWSPDGRRIACGS---MDGTISVFDVTRAK---FLHHLEGHFMPVRSLVYSPVDPRVLFSASDDTHVHMYDAEGK  233 (315)
Q Consensus       160 ~i~~~~~~~~~~~l~~~s---~dg~i~i~d~~~~~---~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~  233 (315)
                       -....|-.+|..+-+|.   .+..+-+||.....   ..+.+... ..|.--.|.|+..-+.++|-.|+.|+-|.....
T Consensus       219 -~~Raifl~~g~i~tTGfsr~seRq~aLwdp~nl~eP~~~~elDtS-nGvl~PFyD~dt~ivYl~GKGD~~IRYyEit~d  296 (472)
T KOG0303|consen  219 -PARAIFLASGKIFTTGFSRMSERQIALWDPNNLEEPIALQELDTS-NGVLLPFYDPDTSIVYLCGKGDSSIRYFEITNE  296 (472)
T ss_pred             -cceeEEeccCceeeeccccccccceeccCcccccCcceeEEeccC-CceEEeeecCCCCEEEEEecCCcceEEEEecCC
Confidence             22345666777555553   57789999875433   23344333 334444566644445566778999999998754


Q ss_pred             e
Q 021247          234 S  234 (315)
Q Consensus       234 ~  234 (315)
                      .
T Consensus       297 ~  297 (472)
T KOG0303|consen  297 P  297 (472)
T ss_pred             C
Confidence            3

>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=99.82  E-value=4.3e-16  Score=123.78  Aligned_cols=239  Identities=18%  Similarity=0.277  Sum_probs=170.2

Q ss_pred             cceEEEEEeecCCCCCcEEEEeeCCCcEEEEcCCCCcceeeccccccceEEEEeCCCCCEEEEeeCCCeEEEEECCCCce
Q 021247           15 ESVWAVTWVPATETRPALLLTGSLDETVKLWRPDDMQLERTNTGHCLGVVSVAAHPSGIIAASASLDSFVRVFDVDTNAS   94 (315)
Q Consensus        15 ~~v~~v~~~~~~~~~~~~l~sgs~d~~v~~w~~~~~~~~~~~~~h~~~v~~~~~~~~g~~l~s~~~d~~i~~w~~~~~~~   94 (315)
                      ..++...|..+.    ..|..|+.||. ++|+.+..............|..+-|+.+=--+++...-+.+++.+.+....
T Consensus         6 ~ti~~~~~Nqd~----~~lsvGs~~Gy-k~~~~~~~~k~~~~~~~~~~IvEmLFSSSLvaiV~~~qpr~Lkv~~~Kk~~~   80 (391)
T KOG2110|consen    6 PTINFIGFNQDS----TLLSVGSKDGY-KIFSCSPFEKCFSKDTEGVSIVEMLFSSSLVAIVSIKQPRKLKVVHFKKKTT   80 (391)
T ss_pred             cceeeeeeccce----eEEEccCCCce-eEEecCchHHhhcccCCCeEEEEeecccceeEEEecCCCceEEEEEcccCce
Confidence            455556665433    35777777764 5666544332222222233455666655433333333335599999988877


Q ss_pred             eEEeeCCcccEEEEEECCCCCeEEEEecCCCeEEEEecCCcceeeeecCCCCCCCCCCccCCCCcceEEEEECCCCCEEE
Q 021247           95 IATLEASPSEVWQMQFDPKGTTLAVAGGGSASVKLWDTATWNLIATLSIPRPEGLKPTDKSSSKKFVLSVAWSPDGRRIA  174 (315)
Q Consensus        95 ~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~  174 (315)
                      +..+. .+.+|.++.++-+  .+++ +-. ..|.|||+++++.+.++...++          +...+..+..++.+.+++
T Consensus        81 ICe~~-fpt~IL~VrmNr~--RLvV-~Le-e~IyIydI~~MklLhTI~t~~~----------n~~gl~AlS~n~~n~ylA  145 (391)
T KOG2110|consen   81 ICEIF-FPTSILAVRMNRK--RLVV-CLE-ESIYIYDIKDMKLLHTIETTPP----------NPKGLCALSPNNANCYLA  145 (391)
T ss_pred             EEEEe-cCCceEEEEEccc--eEEE-EEc-ccEEEEecccceeehhhhccCC----------CccceEeeccCCCCceEE
Confidence            77665 4678999999865  3333 333 3599999999999988754322          112244555555666887


Q ss_pred             E--ecCCCcEEEEEcccceeeeeecCCccceEEEEEcCCCCcEEEEEeCCCe-EEEEeCCCCeeEEEeecc--cccEEEE
Q 021247          175 C--GSMDGTISVFDVTRAKFLHHLEGHFMPVRSLVYSPVDPRVLFSASDDTH-VHMYDAEGKSLVTAMSGH--ASWVLSV  249 (315)
Q Consensus       175 ~--~s~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~-i~~wd~~~~~~~~~~~~~--~~~i~~~  249 (315)
                      -  ....|.|.+||+.+.+....+..|.+++.+++|++ ++.+|+++++.|+ |+||....++.+.+++-.  ...|.++
T Consensus       146 yp~s~t~GdV~l~d~~nl~~v~~I~aH~~~lAalafs~-~G~llATASeKGTVIRVf~v~~G~kl~eFRRG~~~~~IySL  224 (391)
T KOG2110|consen  146 YPGSTTSGDVVLFDTINLQPVNTINAHKGPLAALAFSP-DGTLLATASEKGTVIRVFSVPEGQKLYEFRRGTYPVSIYSL  224 (391)
T ss_pred             ecCCCCCceEEEEEcccceeeeEEEecCCceeEEEECC-CCCEEEEeccCceEEEEEEcCCccEeeeeeCCceeeEEEEE
Confidence            4  34678999999999999999999999999999998 7889999999988 699999999888877633  4558899


Q ss_pred             EEcCCCCeEEEEeCCCcEEEEecCc
Q 021247          250 DASPDGAAITTGSSDRTVKLWDLNM  274 (315)
Q Consensus       250 ~~~~~~~~l~s~~~d~~i~iwd~~~  274 (315)
                      +|+|++++|++.+..++|.+|.+..
T Consensus       225 ~Fs~ds~~L~~sS~TeTVHiFKL~~  249 (391)
T KOG2110|consen  225 SFSPDSQFLAASSNTETVHIFKLEK  249 (391)
T ss_pred             EECCCCCeEEEecCCCeEEEEEecc
Confidence            9999999999999999999998853

>KOG0649 consensus WD40 repeat protein [General function prediction only]

Probab=99.81  E-value=8.3e-17  Score=121.07  Aligned_cols=270  Identities=16%  Similarity=0.221  Sum_probs=186.0

Q ss_pred             cceEEEEEeecCCCCCcEEEEeeCCCcEEEEcCCC---------Cc-ceeeccccccceEEEEeCCCCCEEEEeeCCCeE
Q 021247           15 ESVWAVTWVPATETRPALLLTGSLDETVKLWRPDD---------MQ-LERTNTGHCLGVVSVAAHPSGIIAASASLDSFV   84 (315)
Q Consensus        15 ~~v~~v~~~~~~~~~~~~l~sgs~d~~v~~w~~~~---------~~-~~~~~~~h~~~v~~~~~~~~g~~l~s~~~d~~i   84 (315)
                      ..|++-+|+|...    +|+.|+.+|.|-+..+..         ++ ......+|.+++..+.|+.  ..|++++ ||.|
T Consensus        11 ~tvf~qa~sp~~~----~l~agn~~G~iav~sl~sl~s~sa~~~gk~~iv~eqahdgpiy~~~f~d--~~Lls~g-dG~V   83 (325)
T KOG0649|consen   11 NTVFAQAISPSKQ----YLFAGNLFGDIAVLSLKSLDSGSAEPPGKLKIVPEQAHDGPIYYLAFHD--DFLLSGG-DGLV   83 (325)
T ss_pred             HHHHHHhhCCcce----EEEEecCCCeEEEEEehhhhccccCCCCCcceeeccccCCCeeeeeeeh--hheeecc-CceE
Confidence            5788889999765    799999999999997532         11 1223368999999999983  3566665 6999


Q ss_pred             EEEECCCCce------eEE--eeC-----CcccEEEEEECCCCCeEEEEecCCCeEEEEecCCcceeeeecCCCCCCCCC
Q 021247           85 RVFDVDTNAS------IAT--LEA-----SPSEVWQMQFDPKGTTLAVAGGGSASVKLWDTATWNLIATLSIPRPEGLKP  151 (315)
Q Consensus        85 ~~w~~~~~~~------~~~--~~~-----~~~~v~~~~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~  151 (315)
                      +-|..+....      ...  ...     .-.+|+++-..|+.+.++++| +|+.+..||+++++....+.         
T Consensus        84 ~gw~W~E~~es~~~K~lwe~~~P~~~~~~evPeINam~ldP~enSi~~Ag-GD~~~y~~dlE~G~i~r~~r---------  153 (325)
T KOG0649|consen   84 YGWEWNEEEESLATKRLWEVKIPMQVDAVEVPEINAMWLDPSENSILFAG-GDGVIYQVDLEDGRIQREYR---------  153 (325)
T ss_pred             EEeeehhhhhhccchhhhhhcCccccCcccCCccceeEeccCCCcEEEec-CCeEEEEEEecCCEEEEEEc---------
Confidence            9998654321      000  111     124688999999988777665 89999999999998877663         


Q ss_pred             CccCCCCcceEEEEECCCCCEEEEecCCCcEEEEEcccceeeeeecCC---------c-cceEEEEEcCCCCcEEEEEeC
Q 021247          152 TDKSSSKKFVLSVAWSPDGRRIACGSMDGTISVFDVTRAKFLHHLEGH---------F-MPVRSLVYSPVDPRVLFSASD  221 (315)
Q Consensus       152 ~~~~~~~~~i~~~~~~~~~~~l~~~s~dg~i~i~d~~~~~~~~~~~~~---------~-~~v~~~~~~~~~~~~l~s~~~  221 (315)
                          +|.+++.+++--.....+++|++||++++||+++++.+..+...         . .-|.+++-+   ...+++| .
T Consensus       154 ----GHtDYvH~vv~R~~~~qilsG~EDGtvRvWd~kt~k~v~~ie~yk~~~~lRp~~g~wigala~~---edWlvCG-g  225 (325)
T KOG0649|consen  154 ----GHTDYVHSVVGRNANGQILSGAEDGTVRVWDTKTQKHVSMIEPYKNPNLLRPDWGKWIGALAVN---EDWLVCG-G  225 (325)
T ss_pred             ----CCcceeeeeeecccCcceeecCCCccEEEEeccccceeEEeccccChhhcCcccCceeEEEecc---CceEEec-C
Confidence                57778989888666678999999999999999999887665422         1 124455433   3355444 4


Q ss_pred             CCeEEEEeCCCCeeEEEeecccccEEEEEEcCCCCeEEEEeCCCcEEEEecCccceehcccccccceEEEEEeeCCCEE-
Q 021247          222 DTHVHMYDAEGKSLVTAMSGHASWVLSVDASPDGAAITTGSSDRTVKLWDLNMRAAMQSMTNHTDQVWGVSFRPLGGRV-  300 (315)
Q Consensus       222 d~~i~~wd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l-  300 (315)
                      ...+.+|+++..+....+. -...+..+.|..+  .+++++..+.|.-|.++ +..-...+.......+..++..--++ 
T Consensus       226 Gp~lslwhLrsse~t~vfp-ipa~v~~v~F~~d--~vl~~G~g~~v~~~~l~-Gvl~a~ip~~s~~c~s~s~~~~p~k~~  301 (325)
T KOG0649|consen  226 GPKLSLWHLRSSESTCVFP-IPARVHLVDFVDD--CVLIGGEGNHVQSYTLN-GVLQANIPVESTACYSASWQTSPIKFI  301 (325)
T ss_pred             CCceeEEeccCCCceEEEe-cccceeEeeeecc--eEEEeccccceeeeeec-cEEEEeccCCccceeeecccCCceEEE
Confidence            5679999999876655443 2344666777644  67888888899999886 33333344444556666666544444 


Q ss_pred             EEEeCCCcEEEee
Q 021247          301 VSVSDDKSISLYE  313 (315)
Q Consensus       301 ~s~~~d~~i~i~~  313 (315)
                      -.+|....+.|+.
T Consensus       302 s~ag~s~~~~i~~  314 (325)
T KOG0649|consen  302 SIAGFSNKLHILK  314 (325)
T ss_pred             Eecccceeeeeee
Confidence            4566667776653

>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]

Probab=99.81  E-value=6.8e-18  Score=149.91  Aligned_cols=247  Identities=18%  Similarity=0.297  Sum_probs=180.3

Q ss_pred             ceEEEEeCCCCCEEEEeeCCCeEEEEECCCCceeEEeeCCc---ccEEEEEE-CCCCCeEEEEecCCCeEEEEecCCc--
Q 021247           62 GVVSVAAHPSGIIAASASLDSFVRVFDVDTNASIATLEASP---SEVWQMQF-DPKGTTLAVAGGGSASVKLWDTATW--  135 (315)
Q Consensus        62 ~v~~~~~~~~g~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~---~~v~~~~~-~~~~~~~~~~~~~d~~i~~~d~~~~--  135 (315)
                      +...+.++|-...++++.....|++||.+.++.+..+..+.   ..|..+.+ +.+...++++++.||.|+||+--..  
T Consensus      1066 ~pk~~~~hpf~p~i~~ad~r~~i~vwd~e~~~~l~~F~n~~~~~t~Vs~l~liNe~D~aLlLtas~dGvIRIwk~y~~~~ 1145 (1387)
T KOG1517|consen 1066 PPKTLKFHPFEPQIAAADDRERIRVWDWEKGRLLNGFDNGAFPDTRVSDLELINEQDDALLLTASSDGVIRIWKDYADKW 1145 (1387)
T ss_pred             CCceeeecCCCceeEEcCCcceEEEEecccCceeccccCCCCCCCccceeeeecccchhheeeeccCceEEEeccccccc
Confidence            35677889988899998878889999999999887776543   45777775 4445567788999999999975321  


Q ss_pred             ---ceeeeecCCCCCCCCCCccCCCCcceEEEEECCCCCEEEEecCCCcEEEEEcccceeeeeec-CCccceEEEEEcCC
Q 021247          136 ---NLIATLSIPRPEGLKPTDKSSSKKFVLSVAWSPDGRRIACGSMDGTISVFDVTRAKFLHHLE-GHFMPVRSLVYSPV  211 (315)
Q Consensus       136 ---~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~s~dg~i~i~d~~~~~~~~~~~-~~~~~v~~~~~~~~  211 (315)
                         +++.-+..  -.+..+    .....-.-+.|..+..+|++++.-..|+|||.+..+....+. +....++++.-.-.
T Consensus      1146 ~~~eLVTaw~~--Ls~~~~----~~r~~~~v~dWqQ~~G~Ll~tGd~r~IRIWDa~~E~~~~diP~~s~t~vTaLS~~~~ 1219 (1387)
T KOG1517|consen 1146 KKPELVTAWSS--LSDQLP----GARGTGLVVDWQQQSGHLLVTGDVRSIRIWDAHKEQVVADIPYGSSTLVTALSADLV 1219 (1387)
T ss_pred             CCceeEEeecc--ccccCc----cCCCCCeeeehhhhCCeEEecCCeeEEEEEecccceeEeecccCCCccceeeccccc
Confidence               11211110  001111    111111456788877778777778899999999888777664 34456777665555


Q ss_pred             CCcEEEEEeCCCeEEEEeCCCC---eeEEEeeccccc--EEEEEEcCCCC-eEEEEeCCCcEEEEecCccce--ehcccc
Q 021247          212 DPRVLFSASDDTHVHMYDAEGK---SLVTAMSGHASW--VLSVDASPDGA-AITTGSSDRTVKLWDLNMRAA--MQSMTN  283 (315)
Q Consensus       212 ~~~~l~s~~~d~~i~~wd~~~~---~~~~~~~~~~~~--i~~~~~~~~~~-~l~s~~~d~~i~iwd~~~~~~--~~~~~~  283 (315)
                      ++.++++|..||.+++||.+..   ..+.....|+.+  |..+.+.+.|- .|++|+.||.|++||++....  ..++..
T Consensus      1220 ~gn~i~AGfaDGsvRvyD~R~a~~ds~v~~~R~h~~~~~Iv~~slq~~G~~elvSgs~~G~I~~~DlR~~~~e~~~~iv~ 1299 (1387)
T KOG1517|consen 1220 HGNIIAAGFADGSVRVYDRRMAPPDSLVCVYREHNDVEPIVHLSLQRQGLGELVSGSQDGDIQLLDLRMSSKETFLTIVA 1299 (1387)
T ss_pred             CCceEEEeecCCceEEeecccCCccccceeecccCCcccceeEEeecCCCcceeeeccCCeEEEEecccCcccccceeee
Confidence            6789999999999999998743   456677888887  99999999764 499999999999999987422  223333


Q ss_pred             cc--c-ceEEEEEeeCCCEEEEEeCCCcEEEeecC
Q 021247          284 HT--D-QVWGVSFRPLGGRVVSVSDDKSISLYEYS  315 (315)
Q Consensus       284 ~~--~-~v~~~~~s~~~~~l~s~~~d~~i~i~~~~  315 (315)
                      |.  + .++++..|+....+|+|+. +.|+||+.+
T Consensus      1300 ~~~yGs~lTal~VH~hapiiAsGs~-q~ikIy~~~ 1333 (1387)
T KOG1517|consen 1300 HWEYGSALTALTVHEHAPIIASGSA-QLIKIYSLS 1333 (1387)
T ss_pred             ccccCccceeeeeccCCCeeeecCc-ceEEEEecC
Confidence            33  3 5899999999999999999 999999864

>KOG1188 consensus WD40 repeat protein [General function prediction only]

Probab=99.81  E-value=1.9e-18  Score=135.64  Aligned_cols=196  Identities=20%  Similarity=0.307  Sum_probs=153.4

Q ss_pred             CEEEEeeCCCeEEEEECCCCceeEEeeCCcccEEEEEECCC-CCeEEEEecCCCeEEEEecCCcceeeeecCCCCCCCCC
Q 021247           73 IIAASASLDSFVRVFDVDTNASIATLEASPSEVWQMQFDPK-GTTLAVAGGGSASVKLWDTATWNLIATLSIPRPEGLKP  151 (315)
Q Consensus        73 ~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~  151 (315)
                      ..++++-..|.||++|..+++.+..++.++..+..++|... +...+.+++.||+|++||+|.......+......    
T Consensus        41 ~~vav~lSngsv~lyd~~tg~~l~~fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~~~~~~----  116 (376)
T KOG1188|consen   41 TAVAVSLSNGSVRLYDKGTGQLLEEFKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESARISWTQQS----  116 (376)
T ss_pred             eeEEEEecCCeEEEEeccchhhhheecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhhhheeccCCC----
Confidence            56777778899999999999999999999999999998764 5567789999999999999986655444322111    


Q ss_pred             CccCCCCcceEEEEECCCCCEEEEecC----CCcEEEEEccccee-eeee-cCCccceEEEEEcCCCCcEEEEEeCCCeE
Q 021247          152 TDKSSSKKFVLSVAWSPDGRRIACGSM----DGTISVFDVTRAKF-LHHL-EGHFMPVRSLVYSPVDPRVLFSASDDTHV  225 (315)
Q Consensus       152 ~~~~~~~~~i~~~~~~~~~~~l~~~s~----dg~i~i~d~~~~~~-~~~~-~~~~~~v~~~~~~~~~~~~l~s~~~d~~i  225 (315)
                            ..+..+++.+..++.+++|++    +..+.+||++..+. +..+ ..|...|+++.|+|.++.+|++|+.||.+
T Consensus       117 ------~~~f~~ld~nck~~ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~eSH~DDVT~lrFHP~~pnlLlSGSvDGLv  190 (376)
T KOG1188|consen  117 ------GTPFICLDLNCKKNIIACGTELTRSDASVVLWDVRSEQQLLRQLNESHNDDVTQLRFHPSDPNLLLSGSVDGLV  190 (376)
T ss_pred             ------CCcceEeeccCcCCeEEeccccccCceEEEEEEeccccchhhhhhhhccCcceeEEecCCCCCeEEeecccceE
Confidence                  123667887777888888863    66799999987765 4433 46999999999999999999999999999


Q ss_pred             EEEeCCCCee---EEEeecccccEEEEEEcCCC-CeEEEEeCCCcEEEEecCcccee
Q 021247          226 HMYDAEGKSL---VTAMSGHASWVLSVDASPDG-AAITTGSSDRTVKLWDLNMRAAM  278 (315)
Q Consensus       226 ~~wd~~~~~~---~~~~~~~~~~i~~~~~~~~~-~~l~s~~~d~~i~iwd~~~~~~~  278 (315)
                      .+||++....   +...-.|...|..+.|..++ +.+.+-+..++..+|+++.+...
T Consensus       191 nlfD~~~d~EeDaL~~viN~~sSI~~igw~~~~ykrI~clTH~Etf~~~ele~~~~~  247 (376)
T KOG1188|consen  191 NLFDTKKDNEEDALLHVINHGSSIHLIGWLSKKYKRIMCLTHMETFAIYELEDGSEE  247 (376)
T ss_pred             EeeecCCCcchhhHHHhhcccceeeeeeeecCCcceEEEEEccCceeEEEccCCChh
Confidence            9999876421   22223466779999998876 34677788899999999877643

>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]

Probab=99.81  E-value=1.2e-17  Score=144.76  Aligned_cols=226  Identities=20%  Similarity=0.279  Sum_probs=167.5

Q ss_pred             CeEEEEECCCCceeEEeeCCcccEEEEEECCCCCeEEEEecCCCeEEEEecCCcceeeeecCCCCCCCCCCccCCCCcce
Q 021247           82 SFVRVFDVDTNASIATLEASPSEVWQMQFDPKGTTLAVAGGGSASVKLWDTATWNLIATLSIPRPEGLKPTDKSSSKKFV  161 (315)
Q Consensus        82 ~~i~~w~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i  161 (315)
                      +.+.+|++.........-....+|.++.|+|....++++|..+|+|.+||++........       ........|...+
T Consensus       222 ~~~~vW~~~~p~~Pe~~~~~~s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~s-------~ls~~~~sh~~~v  294 (555)
T KOG1587|consen  222 GVLLVWSLKNPNTPELVLESPSEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTPPS-------GLSALEVSHSEPV  294 (555)
T ss_pred             ceEEEEecCCCCCceEEEecCCceeEEEeccCCcceEEeeccCceEEEEEccCCCCCCCc-------ccccccccCCcCe
Confidence            479999998874444444467789999999999999999999999999999875432100       0011234567778


Q ss_pred             EEEEECCC--CCEEEEecCCCcEEEEEccccee-e-----eeec------CCccceEEEEEcCCCCcEEEEEeCCCeEEE
Q 021247          162 LSVAWSPD--GRRIACGSMDGTISVFDVTRAKF-L-----HHLE------GHFMPVRSLVYSPVDPRVLFSASDDTHVHM  227 (315)
Q Consensus       162 ~~~~~~~~--~~~l~~~s~dg~i~i~d~~~~~~-~-----~~~~------~~~~~v~~~~~~~~~~~~l~s~~~d~~i~~  227 (315)
                      ..+.|-.+  +.-|++++.||.|..|+++.... .     ....      .....+++++|.+.++..++.|+++|.|..
T Consensus       295 ~~vvW~~~~~~~~f~s~ssDG~i~~W~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~~FiVGTe~G~v~~  374 (555)
T KOG1587|consen  295 TAVVWLQNEHNTEFFSLSSDGSICSWDTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDPNHFIVGTEEGKVYK  374 (555)
T ss_pred             EEEEEeccCCCCceEEEecCCcEeeeeccccccchhhcccccccccccccccccceeeEeeccCCCceEEEEcCCcEEEE
Confidence            89999764  34599999999999998753322 1     1111      122367899999999999999999999987


Q ss_pred             EeCCCC--------eeEEEeecccccEEEEEEcCCCCeEEEEeCCCcEEEEecC-ccceehcccccccceEEEEEeeCCC
Q 021247          228 YDAEGK--------SLVTAMSGHASWVLSVDASPDGAAITTGSSDRTVKLWDLN-MRAAMQSMTNHTDQVWGVSFRPLGG  298 (315)
Q Consensus       228 wd~~~~--------~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~d~~i~iwd~~-~~~~~~~~~~~~~~v~~~~~s~~~~  298 (315)
                      -..++.        +....+..|.++|..+.++|=+..++..+.|.+|+||... ...++..+..+.+.+++++|||--.
T Consensus       375 ~~r~g~~~~~~~~~~~~~~~~~h~g~v~~v~~nPF~~k~fls~gDW~vriWs~~~~~~Pl~~~~~~~~~v~~vaWSptrp  454 (555)
T KOG1587|consen  375 GCRKGYTPAPEVSYKGHSTFITHIGPVYAVSRNPFYPKNFLSVGDWTVRIWSEDVIASPLLSLDSSPDYVTDVAWSPTRP  454 (555)
T ss_pred             EeccCCcccccccccccccccccCcceEeeecCCCccceeeeeccceeEeccccCCCCcchhhhhccceeeeeEEcCcCc
Confidence            443322        1233556789999999999966555444449999999987 5667777777788899999999865


Q ss_pred             E-EEEEeCCCcEEEeec
Q 021247          299 R-VVSVSDDKSISLYEY  314 (315)
Q Consensus       299 ~-l~s~~~d~~i~i~~~  314 (315)
                      . ++++..||.|.|||+
T Consensus       455 avF~~~d~~G~l~iWDL  471 (555)
T KOG1587|consen  455 AVFATVDGDGNLDIWDL  471 (555)
T ss_pred             eEEEEEcCCCceehhhh
Confidence            4 567778999999997

>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]

Probab=99.81  E-value=2.7e-17  Score=148.17  Aligned_cols=289  Identities=21%  Similarity=0.243  Sum_probs=193.1

Q ss_pred             hccccceEEEEEeecCCCCCcEEEEeeCCCcEEEEcCCCCcc-------eeeccccccceEEEEeCCCCCEEEEeeCCCe
Q 021247           11 NAHEESVWAVTWVPATETRPALLLTGSLDETVKLWRPDDMQL-------ERTNTGHCLGVVSVAAHPSGIIAASASLDSF   83 (315)
Q Consensus        11 ~~h~~~v~~v~~~~~~~~~~~~l~sgs~d~~v~~w~~~~~~~-------~~~~~~h~~~v~~~~~~~~g~~l~s~~~d~~   83 (315)
                      .-|...|..++-++.+.   .+|+|||.||+|++|+.....-       .....-....+..+...+.|..+|.++.||.
T Consensus      1045 ~Ehs~~v~k~a~s~~~~---s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~~~~~~~~Av~t~DG~ 1121 (1431)
T KOG1240|consen 1045 HEHSSAVIKLAVSSEHT---SLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVTMCGNGDQFAVSTKDGS 1121 (1431)
T ss_pred             hhccccccceeecCCCC---ceEEEecCCceEEEeeehhhhcCcceeeeeEEEeccCCceEEEEeccCCCeEEEEcCCCe
Confidence            45778888888877542   4899999999999998643211       1111113456778888889999999999999


Q ss_pred             EEEEECCCCc-------eeEEeeC-CcccEEEE-EECCC-CCeEEEEecCCCeEEEEecCCcceeeeecCCCCCCCCCCc
Q 021247           84 VRVFDVDTNA-------SIATLEA-SPSEVWQM-QFDPK-GTTLAVAGGGSASVKLWDTATWNLIATLSIPRPEGLKPTD  153 (315)
Q Consensus        84 i~~w~~~~~~-------~~~~~~~-~~~~v~~~-~~~~~-~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~  153 (315)
                      |++.+++-..       ....... ..+.+..| ++... ....++.+...+.|..||++.......+..+..       
T Consensus      1122 v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~~w~lk~~~~------- 1194 (1431)
T KOG1240|consen 1122 VRVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHDAWRLKNQLR------- 1194 (1431)
T ss_pred             EEEEEccccccccceeeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecchhhhhHHhhhcCcc-------
Confidence            9999987621       1111111 22333333 23222 223556667788999999987655554433222       


Q ss_pred             cCCCCcceEEEEECCCCCEEEEecCCCcEEEEEcccceeeeeec-CCccceEEEEEcCCCC--cEEEEEe--CCCeEEEE
Q 021247          154 KSSSKKFVLSVAWSPDGRRIACGSMDGTISVFDVTRAKFLHHLE-GHFMPVRSLVYSPVDP--RVLFSAS--DDTHVHMY  228 (315)
Q Consensus       154 ~~~~~~~i~~~~~~~~~~~l~~~s~dg~i~i~d~~~~~~~~~~~-~~~~~v~~~~~~~~~~--~~l~s~~--~d~~i~~w  228 (315)
                          .+.|++++.+|.+++++.|+..|.+.+||++-+.++.... .+..+++.+..+|..+  ...++++  ..+.|-+|
T Consensus      1195 ----hG~vTSi~idp~~~WlviGts~G~l~lWDLRF~~~i~sw~~P~~~~i~~v~~~~~~~~~S~~vs~~~~~~nevs~w 1270 (1431)
T KOG1240|consen 1195 ----HGLVTSIVIDPWCNWLVIGTSRGQLVLWDLRFRVPILSWEHPARAPIRHVWLCPTYPQESVSVSAGSSSNNEVSTW 1270 (1431)
T ss_pred             ----ccceeEEEecCCceEEEEecCCceEEEEEeecCceeecccCcccCCcceEEeeccCCCCceEEEecccCCCceeee
Confidence                3459999999999999999999999999999887777664 3456788887777655  5555555  46789999


Q ss_pred             eCCCCeeEEEeecc-------------------cccEEEEEEcCCCCeEEEEeCCCcEEEEecCcccee-----------
Q 021247          229 DAEGKSLVTAMSGH-------------------ASWVLSVDASPDGAAITTGSSDRTVKLWDLNMRAAM-----------  278 (315)
Q Consensus       229 d~~~~~~~~~~~~~-------------------~~~i~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~-----------  278 (315)
                      ++.++.....+..-                   .-......+...+..+.+|+.|..||.||...-+..           
T Consensus      1271 n~~~g~~~~vl~~s~~~p~ls~~~Ps~~~~kp~~~~~~~~~~~~~~~~~ltggsd~kIR~wD~~~p~~ss~~~~~~s~~~ 1350 (1431)
T KOG1240|consen 1271 NMETGLRQTVLWASDGAPILSYALPSNDARKPDSLAGISCGVCEKNGFLLTGGSDMKIRKWDPTRPEISSYAVPGPSTSY 1350 (1431)
T ss_pred             ecccCcceEEEEcCCCCcchhhhcccccCCCCCcccceeeecccCCceeeecCCccceeeccCCCcccccccccCccccc
Confidence            99877443332211                   001111223334568899999999999996421110           


Q ss_pred             ------------------hc---------------------------ccccccceEEEEEeeC-CCEEEEEeCCCcEEEe
Q 021247          279 ------------------QS---------------------------MTNHTDQVWGVSFRPL-GGRVVSVSDDKSISLY  312 (315)
Q Consensus       279 ------------------~~---------------------------~~~~~~~v~~~~~s~~-~~~l~s~~~d~~i~i~  312 (315)
                                        ..                           -..|.++|+++++-.. ..+|++++.||.|+||
T Consensus      1351 ~~~~~s~~~~~i~~~~~i~e~i~~~~tv~~t~~~~~~~~~~~~~~~ps~~H~d~Itdma~~~~~q~llvs~s~dG~IkiW 1430 (1431)
T KOG1240|consen 1351 STNSESYDLSTIPGSQFIDEFIIYQQTVGLTEALRENQKLRPGPSDPSTYHHDPITDMATLKSEQPLLVSSSRDGVIKIW 1430 (1431)
T ss_pred             cccchhccccccCCCccchhhhhhhhhcCchhhcccccccccCCCCCcccccchhhhhhhhccCccEEEEecCCCeeeec
Confidence                              00                           0235667887776544 3578999999999999


Q ss_pred             e
Q 021247          313 E  313 (315)
Q Consensus       313 ~  313 (315)
                      +
T Consensus      1431 k 1431 (1431)
T KOG1240|consen 1431 K 1431 (1431)
T ss_pred             C
Confidence            5

>PRK11028 6-phosphogluconolactonase; Provisional

Probab=99.80  E-value=3e-16  Score=132.16  Aligned_cols=244  Identities=14%  Similarity=0.189  Sum_probs=156.1

Q ss_pred             cceEEEEEeecCCCCCcEEEEe-eCCCcEEEEcCC-CCcce--eeccccccceEEEEeCCCCCEEEEee-CCCeEEEEEC
Q 021247           15 ESVWAVTWVPATETRPALLLTG-SLDETVKLWRPD-DMQLE--RTNTGHCLGVVSVAAHPSGIIAASAS-LDSFVRVFDV   89 (315)
Q Consensus        15 ~~v~~v~~~~~~~~~~~~l~sg-s~d~~v~~w~~~-~~~~~--~~~~~h~~~v~~~~~~~~g~~l~s~~-~d~~i~~w~~   89 (315)
                      .....++++|+.+    +|+++ ..++.|.+|+.+ +.++.  .... .......+.++|+|+++++++ .++.|.+|++
T Consensus        35 ~~~~~l~~spd~~----~lyv~~~~~~~i~~~~~~~~g~l~~~~~~~-~~~~p~~i~~~~~g~~l~v~~~~~~~v~v~~~  109 (330)
T PRK11028         35 GQVQPMVISPDKR----HLYVGVRPEFRVLSYRIADDGALTFAAESP-LPGSPTHISTDHQGRFLFSASYNANCVSVSPL  109 (330)
T ss_pred             CCCccEEECCCCC----EEEEEECCCCcEEEEEECCCCceEEeeeec-CCCCceEEEECCCCCEEEEEEcCCCeEEEEEE
Confidence            4566778888664    45555 458899999876 23321  1111 223467899999999887765 4889999999


Q ss_pred             CCCc----eeEEeeCCcccEEEEEECCCCCeEEEEecCCCeEEEEecCCcceeeeecCCCCCCCCCCccCCCCcceEEEE
Q 021247           90 DTNA----SIATLEASPSEVWQMQFDPKGTTLAVAGGGSASVKLWDTATWNLIATLSIPRPEGLKPTDKSSSKKFVLSVA  165 (315)
Q Consensus        90 ~~~~----~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~  165 (315)
                      ++..    .+..+. +......++++|+++.++++...++.|.+||+.+...+.... ......      ........++
T Consensus       110 ~~~g~~~~~~~~~~-~~~~~~~~~~~p~g~~l~v~~~~~~~v~v~d~~~~g~l~~~~-~~~~~~------~~g~~p~~~~  181 (330)
T PRK11028        110 DKDGIPVAPIQIIE-GLEGCHSANIDPDNRTLWVPCLKEDRIRLFTLSDDGHLVAQE-PAEVTT------VEGAGPRHMV  181 (330)
T ss_pred             CCCCCCCCceeecc-CCCcccEeEeCCCCCEEEEeeCCCCEEEEEEECCCCcccccC-CCceec------CCCCCCceEE
Confidence            7432    222222 223456788999999998888889999999997632221000 000000      0011246789


Q ss_pred             ECCCCCEEEEecC-CCcEEEEEccc--c--eeeeeecCC------ccceEEEEEcCCCCcEEEEE-eCCCeEEEEeCCCC
Q 021247          166 WSPDGRRIACGSM-DGTISVFDVTR--A--KFLHHLEGH------FMPVRSLVYSPVDPRVLFSA-SDDTHVHMYDAEGK  233 (315)
Q Consensus       166 ~~~~~~~l~~~s~-dg~i~i~d~~~--~--~~~~~~~~~------~~~v~~~~~~~~~~~~l~s~-~~d~~i~~wd~~~~  233 (315)
                      |+|+|+++++... ++.|.+||+..  +  +.+..+..+      ......+.++| ++++++++ ..++.|.+|++...
T Consensus       182 ~~pdg~~lyv~~~~~~~v~v~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~i~~~p-dg~~lyv~~~~~~~I~v~~i~~~  260 (330)
T PRK11028        182 FHPNQQYAYCVNELNSSVDVWQLKDPHGEIECVQTLDMMPADFSDTRWAADIHITP-DGRHLYACDRTASLISVFSVSED  260 (330)
T ss_pred             ECCCCCEEEEEecCCCEEEEEEEeCCCCCEEEEEEEecCCCcCCCCccceeEEECC-CCCEEEEecCCCCeEEEEEEeCC
Confidence            9999999977765 89999999963  2  223333221      11223588998 45566555 45789999998543


Q ss_pred             e----eEEEeecccccEEEEEEcCCCCeEEEEeC-CCcEEEEecC
Q 021247          234 S----LVTAMSGHASWVLSVDASPDGAAITTGSS-DRTVKLWDLN  273 (315)
Q Consensus       234 ~----~~~~~~~~~~~i~~~~~~~~~~~l~s~~~-d~~i~iwd~~  273 (315)
                      .    .+..... ......+.++|+|++|+++.. +++|.+|+++
T Consensus       261 ~~~~~~~~~~~~-~~~p~~~~~~~dg~~l~va~~~~~~v~v~~~~  304 (330)
T PRK11028        261 GSVLSFEGHQPT-ETQPRGFNIDHSGKYLIAAGQKSHHISVYEID  304 (330)
T ss_pred             CCeEEEeEEEec-cccCCceEECCCCCEEEEEEccCCcEEEEEEc
Confidence            2    2222221 124567899999999887765 8999999875

>KOG1310 consensus WD40 repeat protein [General function prediction only]

Probab=99.79  E-value=3.1e-18  Score=142.29  Aligned_cols=246  Identities=20%  Similarity=0.282  Sum_probs=164.1

Q ss_pred             cchhhhhhccccceEEEEEeecCCCCCcEEEEeeCCCcEEEEcCCCCcceee-ccccccceEEEEeCCC--CCEEEEeeC
Q 021247            4 AGLKSVENAHEESVWAVTWVPATETRPALLLTGSLDETVKLWRPDDMQLERT-NTGHCLGVVSVAAHPS--GIIAASASL   80 (315)
Q Consensus         4 ~~~~~~~~~h~~~v~~v~~~~~~~~~~~~l~sgs~d~~v~~w~~~~~~~~~~-~~~h~~~v~~~~~~~~--g~~l~s~~~   80 (315)
                      .+++..+.||++-|+|++|...+.    +|++||.|-.+.+||+...++... -.||..-|.++.|-|.  ..++++|+.
T Consensus        40 L~lE~eL~GH~GCVN~LeWn~dG~----lL~SGSDD~r~ivWd~~~~KllhsI~TgHtaNIFsvKFvP~tnnriv~sgAg  115 (758)
T KOG1310|consen   40 LDLEAELTGHTGCVNCLEWNADGE----LLASGSDDTRLIVWDPFEYKLLHSISTGHTANIFSVKFVPYTNNRIVLSGAG  115 (758)
T ss_pred             cchhhhhccccceecceeecCCCC----EEeecCCcceEEeecchhcceeeeeecccccceeEEeeeccCCCeEEEeccC
Confidence            456778899999999999998775    899999999999999987776655 4689999999999884  468899999


Q ss_pred             CCeEEEEECCCC----------ceeEEeeCCcccEEEEEECCCCCeEEEEecCCCeEEEEecCCcceeeeecCCCCCCCC
Q 021247           81 DSFVRVFDVDTN----------ASIATLEASPSEVWQMQFDPKGTTLAVAGGGSASVKLWDTATWNLIATLSIPRPEGLK  150 (315)
Q Consensus        81 d~~i~~w~~~~~----------~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~  150 (315)
                      |..|+++|+...          .....+..|...|..++..|.+...+.+++.||+++.||++.....   +  ..++..
T Consensus       116 Dk~i~lfdl~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~PhtfwsasEDGtirQyDiREph~c---~--p~~~~~  190 (758)
T KOG1310|consen  116 DKLIKLFDLDSSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNGPHTFWSASEDGTIRQYDIREPHVC---N--PDEDCP  190 (758)
T ss_pred             cceEEEEecccccccccccCccchhhhhhhhhhhhhheecCCCCCceEEEecCCcceeeecccCCccC---C--cccccc
Confidence            999999999852          2233455677888889999999888899999999999999852110   0  000000


Q ss_pred             CCccCCC--CcceEEEEECCC-CCEEEEecCCCcEEEEEccccee-eeeecCCcc----ceEEEE-EcCCCCcEEEEEeC
Q 021247          151 PTDKSSS--KKFVLSVAWSPD-GRRIACGSMDGTISVFDVTRAKF-LHHLEGHFM----PVRSLV-YSPVDPRVLFSASD  221 (315)
Q Consensus       151 ~~~~~~~--~~~i~~~~~~~~-~~~l~~~s~dg~i~i~d~~~~~~-~~~~~~~~~----~v~~~~-~~~~~~~~l~s~~~  221 (315)
                      .....-+  .-...++..+|. ..+|++|+.|...++||.+.... ...-..++.    +.+++. |+| +.  +  ...
T Consensus       191 ~~l~ny~~~lielk~ltisp~rp~~laVGgsdpfarLYD~Rr~lks~~s~~~~~~~pp~~~~cv~yf~p-~h--l--kn~  265 (758)
T KOG1310|consen  191 SILVNYNPQLIELKCLTISPSRPYYLAVGGSDPFARLYDRRRVLKSFRSDGTMNTCPPKDCRCVRYFSP-GH--L--KNS  265 (758)
T ss_pred             HHHHHhchhhheeeeeeecCCCCceEEecCCCchhhhhhhhhhccCCCCCccccCCCCcccchhheecC-cc--c--cCc
Confidence            0000001  112468899995 56889999999999999643221 111011111    111111 222 10  0  001


Q ss_pred             CCeEEEEeCCCCeeEEEeecccccEEEEEEcCCCCeEEEEeCCCcEEEEecCccce
Q 021247          222 DTHVHMYDAEGKSLVTAMSGHASWVLSVDASPDGAAITTGSSDRTVKLWDLNMRAA  277 (315)
Q Consensus       222 d~~i~~wd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~  277 (315)
                      ++          .....    .-.++-+.|+|+|.-|+..=....|+++|++.++.
T Consensus       266 ~g----------n~~~~----~~~~t~vtfnpNGtElLvs~~gEhVYlfdvn~~~~  307 (758)
T KOG1310|consen  266 QG----------NLDRY----ITCCTYVTFNPNGTELLVSWGGEHVYLFDVNEDKS  307 (758)
T ss_pred             cc----------ccccc----eeeeEEEEECCCCcEEEEeeCCeEEEEEeecCCCC
Confidence            11          01111    11256788999998766666666799999987654

>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.79  E-value=8e-18  Score=135.60  Aligned_cols=199  Identities=28%  Similarity=0.351  Sum_probs=146.3

Q ss_pred             EEEEEeecCCCCCcEEEEeeCCCcEEEEcCCCCcceeeccccccceEEEEeCCCCCEEEEeeCCCeEEEEECCCCceeEE
Q 021247           18 WAVTWVPATETRPALLLTGSLDETVKLWRPDDMQLERTNTGHCLGVVSVAAHPSGIIAASASLDSFVRVFDVDTNASIAT   97 (315)
Q Consensus        18 ~~v~~~~~~~~~~~~l~sgs~d~~v~~w~~~~~~~~~~~~~h~~~v~~~~~~~~g~~l~s~~~d~~i~~w~~~~~~~~~~   97 (315)
                      -+|+|.+++.    .+++|+.||++|+|+............|...|.++.|+|||+.|++.+.| ..+||+++++..+..
T Consensus       148 k~vaf~~~gs----~latgg~dg~lRv~~~Ps~~t~l~e~~~~~eV~DL~FS~dgk~lasig~d-~~~VW~~~~g~~~a~  222 (398)
T KOG0771|consen  148 KVVAFNGDGS----KLATGGTDGTLRVWEWPSMLTILEEIAHHAEVKDLDFSPDGKFLASIGAD-SARVWSVNTGAALAR  222 (398)
T ss_pred             eEEEEcCCCC----EeeeccccceEEEEecCcchhhhhhHhhcCccccceeCCCCcEEEEecCC-ceEEEEeccCchhhh
Confidence            5788887654    69999999999999966666666677899999999999999999999999 899999999976665


Q ss_pred             eeC--CcccEEEEEECCCC---CeEEEEe-cCCCeEEEEecCCcceeeeecCCCCCCCCCCccCCCCcceEEEEECCCCC
Q 021247           98 LEA--SPSEVWQMQFDPKG---TTLAVAG-GGSASVKLWDTATWNLIATLSIPRPEGLKPTDKSSSKKFVLSVAWSPDGR  171 (315)
Q Consensus        98 ~~~--~~~~v~~~~~~~~~---~~~~~~~-~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~  171 (315)
                      ...  .+.....++|..++   ...+++. ..-+.|+.||+..++.-..+...        ........|++++.+++|+
T Consensus       223 ~t~~~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~--------~~~~~~~siSsl~VS~dGk  294 (398)
T KOG0771|consen  223 KTPFSKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLR--------KKIKRFKSISSLAVSDDGK  294 (398)
T ss_pred             cCCcccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccccccchh--------hhhhccCcceeEEEcCCCc
Confidence            542  22334566676554   3333332 33456777776543321111110        0011122489999999999


Q ss_pred             EEEEecCCCcEEEEEcccceeeeee-cCCccceEEEEEcCCCCcEEEEEeCCCeEEEEeC
Q 021247          172 RIACGSMDGTISVFDVTRAKFLHHL-EGHFMPVRSLVYSPVDPRVLFSASDDTHVHMYDA  230 (315)
Q Consensus       172 ~l~~~s~dg~i~i~d~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~  230 (315)
                      +++.|+.||.|-+++..+.+.++.. +.|...|+.+.|+| +.+++++-+.|..+.+..+
T Consensus       295 f~AlGT~dGsVai~~~~~lq~~~~vk~aH~~~VT~ltF~P-dsr~~~svSs~~~~~v~~l  353 (398)
T KOG0771|consen  295 FLALGTMDGSVAIYDAKSLQRLQYVKEAHLGFVTGLTFSP-DSRYLASVSSDNEAAVTKL  353 (398)
T ss_pred             EEEEeccCCcEEEEEeceeeeeEeehhhheeeeeeEEEcC-CcCcccccccCCceeEEEE
Confidence            9999999999999999888777665 46899999999999 6778888887777666543

>PRK01742 tolB translocation protein TolB; Provisional

Probab=99.79  E-value=2.5e-17  Score=143.00  Aligned_cols=211  Identities=20%  Similarity=0.206  Sum_probs=143.3

Q ss_pred             CCeEEEEECCCCceeEEeeCCcccEEEEEECCCCCeEEEEecC--CCeEEEEecCCcceeeeecCCCCCCCCCCccCCCC
Q 021247           81 DSFVRVFDVDTNASIATLEASPSEVWQMQFDPKGTTLAVAGGG--SASVKLWDTATWNLIATLSIPRPEGLKPTDKSSSK  158 (315)
Q Consensus        81 d~~i~~w~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~--d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~  158 (315)
                      +..|++||..... ...+..+...+...+|+|+|+.++++...  +.+|.+||+.+++.......+              
T Consensus       183 ~~~i~i~d~dg~~-~~~lt~~~~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~~l~~~~--------------  247 (429)
T PRK01742        183 PYEVRVADYDGFN-QFIVNRSSQPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARKVVASFR--------------  247 (429)
T ss_pred             eEEEEEECCCCCC-ceEeccCCCccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCceEEEecCC--------------
Confidence            4689999986554 45555667789999999999988766533  347999999876533221111              


Q ss_pred             cceEEEEECCCCCEEEEec-CCCcEEE--EEcccceeeeeecCCccceEEEEEcCCCCcEEEEEeCCCeEEEEeCC--CC
Q 021247          159 KFVLSVAWSPDGRRIACGS-MDGTISV--FDVTRAKFLHHLEGHFMPVRSLVYSPVDPRVLFSASDDTHVHMYDAE--GK  233 (315)
Q Consensus       159 ~~i~~~~~~~~~~~l~~~s-~dg~i~i--~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~--~~  233 (315)
                      ......+|+|||+.|+.++ .+|.+.+  ||+.++. ...+..+...+....|+|++..+++++..++...+|++.  ++
T Consensus       248 g~~~~~~wSPDG~~La~~~~~~g~~~Iy~~d~~~~~-~~~lt~~~~~~~~~~wSpDG~~i~f~s~~~g~~~I~~~~~~~~  326 (429)
T PRK01742        248 GHNGAPAFSPDGSRLAFASSKDGVLNIYVMGANGGT-PSQLTSGAGNNTEPSWSPDGQSILFTSDRSGSPQVYRMSASGG  326 (429)
T ss_pred             CccCceeECCCCCEEEEEEecCCcEEEEEEECCCCC-eEeeccCCCCcCCEEECCCCCEEEEEECCCCCceEEEEECCCC
Confidence            1133679999999887754 6776555  5665554 344556666778899999655455565567777887754  33


Q ss_pred             eeEEEeecccccEEEEEEcCCCCeEEEEeCCCcEEEEecCccceehcccccccceEEEEEeeCCCEEEEEeCCCcEEEee
Q 021247          234 SLVTAMSGHASWVLSVDASPDGAAITTGSSDRTVKLWDLNMRAAMQSMTNHTDQVWGVSFRPLGGRVVSVSDDKSISLYE  313 (315)
Q Consensus       234 ~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~i~i~~  313 (315)
                      .. ..+ .+..  ....|+|+|+.|+..+.++ +.+||+.+++.......+  ...++.|+|+|++|+.++.++.+.+|.
T Consensus       327 ~~-~~l-~~~~--~~~~~SpDG~~ia~~~~~~-i~~~Dl~~g~~~~lt~~~--~~~~~~~sPdG~~i~~~s~~g~~~~l~  399 (429)
T PRK01742        327 GA-SLV-GGRG--YSAQISADGKTLVMINGDN-VVKQDLTSGSTEVLSSTF--LDESPSISPNGIMIIYSSTQGLGKVLQ  399 (429)
T ss_pred             Ce-EEe-cCCC--CCccCCCCCCEEEEEcCCC-EEEEECCCCCeEEecCCC--CCCCceECCCCCEEEEEEcCCCceEEE
Confidence            22 222 3333  4578999999998887765 556999877543222222  235678999999999999999888876


Q ss_pred             c
Q 021247          314 Y  314 (315)
Q Consensus       314 ~  314 (315)
                      +
T Consensus       400 ~  400 (429)
T PRK01742        400 L  400 (429)
T ss_pred             E
Confidence            4

>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=99.79  E-value=2.8e-16  Score=122.49  Aligned_cols=235  Identities=20%  Similarity=0.287  Sum_probs=160.0

Q ss_pred             ceEEEEeCCCCCEEEEeeCCCeEEEEECCCCceeEEeeCCcccEEEEEECCCCCeEEEEecCC------CeEEEEecCCc
Q 021247           62 GVVSVAAHPSGIIAASASLDSFVRVFDVDTNASIATLEASPSEVWQMQFDPKGTTLAVAGGGS------ASVKLWDTATW  135 (315)
Q Consensus        62 ~v~~~~~~~~g~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d------~~i~~~d~~~~  135 (315)
                      ...+++|+-|..=++.|..+ -.|+++.+.-+.....+.....+.-+..--..+++++.||..      ..+.|||-...
T Consensus         7 ~~lsvs~NQD~ScFava~~~-Gfriyn~~P~ke~~~r~~~~~G~~~veMLfR~N~laLVGGg~~pky~pNkviIWDD~k~   85 (346)
T KOG2111|consen    7 KTLSVSFNQDHSCFAVATDT-GFRIYNCDPFKESASRQFIDGGFKIVEMLFRSNYLALVGGGSRPKYPPNKVIIWDDLKE   85 (346)
T ss_pred             ceeEEEEccCCceEEEEecC-ceEEEecCchhhhhhhccccCchhhhhHhhhhceEEEecCCCCCCCCCceEEEEecccC
Confidence            44568888877666666554 499999987544322222222121122222345666777665      57999996655


Q ss_pred             ceeeeecCCCCCCCCCCccCCCCcceEEEEECCCCCEEEEecCCCcEEEEEcc-cceeeeeecCCccceEEEEEcCC-CC
Q 021247          136 NLIATLSIPRPEGLKPTDKSSSKKFVLSVAWSPDGRRIACGSMDGTISVFDVT-RAKFLHHLEGHFMPVRSLVYSPV-DP  213 (315)
Q Consensus       136 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~s~dg~i~i~d~~-~~~~~~~~~~~~~~v~~~~~~~~-~~  213 (315)
                      +++.++...              ..|..+.+.++  .+++. .++.|++|... ..+.+..+.....|=--++..|. +.
T Consensus        86 ~~i~el~f~--------------~~I~~V~l~r~--riVvv-l~~~I~VytF~~n~k~l~~~et~~NPkGlC~~~~~~~k  148 (346)
T KOG2111|consen   86 RCIIELSFN--------------SEIKAVKLRRD--RIVVV-LENKIYVYTFPDNPKLLHVIETRSNPKGLCSLCPTSNK  148 (346)
T ss_pred             cEEEEEEec--------------cceeeEEEcCC--eEEEE-ecCeEEEEEcCCChhheeeeecccCCCceEeecCCCCc
Confidence            555555432              23888888764  45444 56789999876 44444444332222223334443 33


Q ss_pred             cEEEE-EeCCCeEEEEeCCCCee--EEEeecccccEEEEEEcCCCCeEEEEeCCCc-EEEEecCccceehccccc--ccc
Q 021247          214 RVLFS-ASDDTHVHMYDAEGKSL--VTAMSGHASWVLSVDASPDGAAITTGSSDRT-VKLWDLNMRAAMQSMTNH--TDQ  287 (315)
Q Consensus       214 ~~l~s-~~~d~~i~~wd~~~~~~--~~~~~~~~~~i~~~~~~~~~~~l~s~~~d~~-i~iwd~~~~~~~~~~~~~--~~~  287 (315)
                      .+|+. |-.-|.|.+-|+...+.  ...+..|...|.+++++-+|..+||++..|+ |||||..+++++.++..-  ...
T Consensus       149 ~~LafPg~k~GqvQi~dL~~~~~~~p~~I~AH~s~Iacv~Ln~~Gt~vATaStkGTLIRIFdt~~g~~l~E~RRG~d~A~  228 (346)
T KOG2111|consen  149 SLLAFPGFKTGQVQIVDLASTKPNAPSIINAHDSDIACVALNLQGTLVATASTKGTLIRIFDTEDGTLLQELRRGVDRAD  228 (346)
T ss_pred             eEEEcCCCccceEEEEEhhhcCcCCceEEEcccCceeEEEEcCCccEEEEeccCcEEEEEEEcCCCcEeeeeecCCchhe
Confidence            34443 33468999999875443  4677899999999999999999999999999 899999999998877542  357


Q ss_pred             eEEEEEeeCCCEEEEEeCCCcEEEeec
Q 021247          288 VWGVSFRPLGGRVVSVSDDKSISLYEY  314 (315)
Q Consensus       288 v~~~~~s~~~~~l~s~~~d~~i~i~~~  314 (315)
                      |.+++|||+..+|+..|+.||+.||.+
T Consensus       229 iy~iaFSp~~s~LavsSdKgTlHiF~l  255 (346)
T KOG2111|consen  229 IYCIAFSPNSSWLAVSSDKGTLHIFSL  255 (346)
T ss_pred             EEEEEeCCCccEEEEEcCCCeEEEEEe
Confidence            999999999999999999999999975

>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A

Probab=99.79  E-value=2.6e-15  Score=126.63  Aligned_cols=274  Identities=19%  Similarity=0.204  Sum_probs=177.5

Q ss_pred             EEEEeeCCCcEEEEcCCCCcceeeccccccceEEEEeCCCCCEEEEeeCCCeEEEEECCCCceeEEeeCCcccEEEEEEC
Q 021247           32 LLLTGSLDETVKLWRPDDMQLERTNTGHCLGVVSVAAHPSGIIAASASLDSFVRVFDVDTNASIATLEASPSEVWQMQFD  111 (315)
Q Consensus        32 ~l~sgs~d~~v~~w~~~~~~~~~~~~~h~~~v~~~~~~~~g~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~v~~~~~~  111 (315)
                      ++++-..++.|.+.|.++.+....+......-..+.++|+|+++..++.|+.|.++|+.+.+.+.+++.... ...++++
T Consensus         8 ~~V~~~~~~~v~viD~~t~~~~~~i~~~~~~h~~~~~s~Dgr~~yv~~rdg~vsviD~~~~~~v~~i~~G~~-~~~i~~s   86 (369)
T PF02239_consen    8 FYVVERGSGSVAVIDGATNKVVARIPTGGAPHAGLKFSPDGRYLYVANRDGTVSVIDLATGKVVATIKVGGN-PRGIAVS   86 (369)
T ss_dssp             EEEEEGGGTEEEEEETTT-SEEEEEE-STTEEEEEE-TT-SSEEEEEETTSEEEEEETTSSSEEEEEE-SSE-EEEEEE-
T ss_pred             EEEEecCCCEEEEEECCCCeEEEEEcCCCCceeEEEecCCCCEEEEEcCCCeEEEEECCcccEEEEEecCCC-cceEEEc
Confidence            345666789999999999888887765444445678999999999999999999999999999998887654 5679999


Q ss_pred             CCCCeEEEEecCCCeEEEEecCCcceeeeecCCCCCCCCCCccCCCCcceEEEEECCCCCEEEEe-cCCCcEEEEEcccc
Q 021247          112 PKGTTLAVAGGGSASVKLWDTATWNLIATLSIPRPEGLKPTDKSSSKKFVLSVAWSPDGRRIACG-SMDGTISVFDVTRA  190 (315)
Q Consensus       112 ~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-s~dg~i~i~d~~~~  190 (315)
                      ++|+++++++...+++.++|.++.+.+..+........      ....++..+.-+|....++.. -..+.|.+.|....
T Consensus        87 ~DG~~~~v~n~~~~~v~v~D~~tle~v~~I~~~~~~~~------~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVdy~d~  160 (369)
T PF02239_consen   87 PDGKYVYVANYEPGTVSVIDAETLEPVKTIPTGGMPVD------GPESRVAAIVASPGRPEFVVNLKDTGEIWVVDYSDP  160 (369)
T ss_dssp             -TTTEEEEEEEETTEEEEEETTT--EEEEEE--EE-TT------TS---EEEEEE-SSSSEEEEEETTTTEEEEEETTTS
T ss_pred             CCCCEEEEEecCCCceeEeccccccceeeccccccccc------ccCCCceeEEecCCCCEEEEEEccCCeEEEEEeccc
Confidence            99999998888899999999999999888754322110      023346778778887755554 45588988887655


Q ss_pred             eee--eeecCCccceEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCeeEEEee----------------------------
Q 021247          191 KFL--HHLEGHFMPVRSLVYSPVDPRVLFSASDDTHVHMYDAEGKSLVTAMS----------------------------  240 (315)
Q Consensus       191 ~~~--~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~----------------------------  240 (315)
                      +.+  ..+. .........|.|++..++++...+..|-++|.++++++..+.                            
T Consensus       161 ~~~~~~~i~-~g~~~~D~~~dpdgry~~va~~~sn~i~viD~~~~k~v~~i~~g~~p~~~~~~~~php~~g~vw~~~~~~  239 (369)
T PF02239_consen  161 KNLKVTTIK-VGRFPHDGGFDPDGRYFLVAANGSNKIAVIDTKTGKLVALIDTGKKPHPGPGANFPHPGFGPVWATSGLG  239 (369)
T ss_dssp             SCEEEEEEE---TTEEEEEE-TTSSEEEEEEGGGTEEEEEETTTTEEEEEEE-SSSBEETTEEEEEETTTEEEEEEEBSS
T ss_pred             cccceeeec-ccccccccccCcccceeeecccccceeEEEeeccceEEEEeeccccccccccccccCCCcceEEeecccc
Confidence            432  2222 233456788998544445555667788888887665443211                            


Q ss_pred             ---------------------------cccccEEEEEEcCCCCeEEEE----eCCCcEEEEecCccceehcccccc-cce
Q 021247          241 ---------------------------GHASWVLSVDASPDGAAITTG----SSDRTVKLWDLNMRAAMQSMTNHT-DQV  288 (315)
Q Consensus       241 ---------------------------~~~~~i~~~~~~~~~~~l~s~----~~d~~i~iwd~~~~~~~~~~~~~~-~~v  288 (315)
                                                 ...+. .-+..+|+++++.+.    ...++|.++|.++.+...++.... ..+
T Consensus       240 ~~~~~~ig~~~v~v~d~~~wkvv~~I~~~G~g-lFi~thP~s~~vwvd~~~~~~~~~v~viD~~tl~~~~~i~~~~~~~~  318 (369)
T PF02239_consen  240 YFAIPLIGTDPVSVHDDYAWKVVKTIPTQGGG-LFIKTHPDSRYVWVDTFLNPDADTVQVIDKKTLKVVKTITPGPGKRV  318 (369)
T ss_dssp             SSEEEEEE--TTT-STTTBTSEEEEEE-SSSS---EE--TT-SEEEEE-TT-SSHT-EEEEECCGTEEEE-HHHHHT--E
T ss_pred             ceecccccCCccccchhhcCeEEEEEECCCCc-ceeecCCCCccEEeeccCCCCCceEEEEECcCcceeEEEeccCCCcE
Confidence                                       00111 235668999999887    445889999999987776664322 358


Q ss_pred             EEEEEeeCCCEE-EEEeCCC-cEEEeec
Q 021247          289 WGVSFRPLGGRV-VSVSDDK-SISLYEY  314 (315)
Q Consensus       289 ~~~~~s~~~~~l-~s~~~d~-~i~i~~~  314 (315)
                      ..+.|+++|+++ +|.-+++ .|.|||-
T Consensus       319 ~h~ef~~dG~~v~vS~~~~~~~i~v~D~  346 (369)
T PF02239_consen  319 VHMEFNPDGKEVWVSVWDGNGAIVVYDA  346 (369)
T ss_dssp             EEEEE-TTSSEEEEEEE--TTEEEEEET
T ss_pred             eccEECCCCCEEEEEEecCCCEEEEEEC
Confidence            899999999987 4544444 7999984

...

>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.78  E-value=9.9e-18  Score=135.05  Aligned_cols=200  Identities=23%  Similarity=0.290  Sum_probs=142.0

Q ss_pred             EEEEeCCCCCEEEEeeCCCeEEEEECCCCceeEEeeCCcccEEEEEECCCCCeEEEEecCCCeEEEEecCCcceeeeecC
Q 021247           64 VSVAAHPSGIIAASASLDSFVRVFDVDTNASIATLEASPSEVWQMQFDPKGTTLAVAGGGSASVKLWDTATWNLIATLSI  143 (315)
Q Consensus        64 ~~~~~~~~g~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~  143 (315)
                      ..++|+++|..+++++.||++|+|+......+.....|..+|.++.|+|+++.++ +-+.| ..+||+.+++..+.....
T Consensus       148 k~vaf~~~gs~latgg~dg~lRv~~~Ps~~t~l~e~~~~~eV~DL~FS~dgk~la-sig~d-~~~VW~~~~g~~~a~~t~  225 (398)
T KOG0771|consen  148 KVVAFNGDGSKLATGGTDGTLRVWEWPSMLTILEEIAHHAEVKDLDFSPDGKFLA-SIGAD-SARVWSVNTGAALARKTP  225 (398)
T ss_pred             eEEEEcCCCCEeeeccccceEEEEecCcchhhhhhHhhcCccccceeCCCCcEEE-EecCC-ceEEEEeccCchhhhcCC
Confidence            5789999999999999999999999877777777777889999999999998664 55566 999999998755543321


Q ss_pred             CCCCCCCCCccCCCCcceEEEEECCCC---CEE-E-EecCCCcEEEEEcccceeeeeecCCccceEEEEEcCCCCcEEEE
Q 021247          144 PRPEGLKPTDKSSSKKFVLSVAWSPDG---RRI-A-CGSMDGTISVFDVTRAKFLHHLEGHFMPVRSLVYSPVDPRVLFS  218 (315)
Q Consensus       144 ~~~~~~~~~~~~~~~~~i~~~~~~~~~---~~l-~-~~s~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s  218 (315)
                                 ......+..|.|+.++   .++ + .-...+.|+.||+                               
T Consensus       226 -----------~~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~-------------------------------  263 (398)
T KOG0771|consen  226 -----------FSKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDI-------------------------------  263 (398)
T ss_pred             -----------cccchhhhhceecccCCCceEEEEEecCCCCceeEEEe-------------------------------
Confidence                       1112235566776654   111 1 1122223333332                               


Q ss_pred             EeCCCeEEEEeCCCCeeEEEeecccccEEEEEEcCCCCeEEEEeCCCcEEEEecCccceehcc-cccccceEEEEEeeCC
Q 021247          219 ASDDTHVHMYDAEGKSLVTAMSGHASWVLSVDASPDGAAITTGSSDRTVKLWDLNMRAAMQSM-TNHTDQVWGVSFRPLG  297 (315)
Q Consensus       219 ~~~d~~i~~wd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~-~~~~~~v~~~~~s~~~  297 (315)
                             .+|+....-...+.......|.+++++++|++++.|+.||.|.|++..+.+.++-. ..|...|+++.|+|+.
T Consensus       264 -------~~w~~~~~l~~~~~~~~~~siSsl~VS~dGkf~AlGT~dGsVai~~~~~lq~~~~vk~aH~~~VT~ltF~Pds  336 (398)
T KOG0771|consen  264 -------SLWSGSNFLRLRKKIKRFKSISSLAVSDDGKFLALGTMDGSVAIYDAKSLQRLQYVKEAHLGFVTGLTFSPDS  336 (398)
T ss_pred             -------eeeccccccchhhhhhccCcceeEEEcCCCcEEEEeccCCcEEEEEeceeeeeEeehhhheeeeeeEEEcCCc
Confidence                   22222100000111122345899999999999999999999999999876655443 4689999999999999


Q ss_pred             CEEEEEeCCCcEEEeec
Q 021247          298 GRVVSVSDDKSISLYEY  314 (315)
Q Consensus       298 ~~l~s~~~d~~i~i~~~  314 (315)
                      +++++.+.|.++.|..+
T Consensus       337 r~~~svSs~~~~~v~~l  353 (398)
T KOG0771|consen  337 RYLASVSSDNEAAVTKL  353 (398)
T ss_pred             CcccccccCCceeEEEE
Confidence            99999999999988765

>KOG4227 consensus WD40 repeat protein [General function prediction only]

Probab=99.77  E-value=5.9e-17  Score=129.72  Aligned_cols=247  Identities=15%  Similarity=0.170  Sum_probs=180.4

Q ss_pred             eeccccccceEEEEeCCCCCEEEEeeCCCeEEEEECCCC------ceeEEeeC-CcccEEEEEECCCCCeEEEEecCCCe
Q 021247           54 RTNTGHCLGVVSVAAHPSGIIAASASLDSFVRVFDVDTN------ASIATLEA-SPSEVWQMQFDPKGTTLAVAGGGSAS  126 (315)
Q Consensus        54 ~~~~~h~~~v~~~~~~~~g~~l~s~~~d~~i~~w~~~~~------~~~~~~~~-~~~~v~~~~~~~~~~~~~~~~~~d~~  126 (315)
                      +-+.+|.+.|+++.|+.++++|++|+.|..+++|+++..      +++..... |...|.+++|+.. +.++++|+.+++
T Consensus        50 KD~~~H~GCiNAlqFS~N~~~L~SGGDD~~~~~W~~de~~~~k~~KPI~~~~~~H~SNIF~L~F~~~-N~~~~SG~~~~~  128 (609)
T KOG4227|consen   50 KDVREHTGCINALQFSHNDRFLASGGDDMHGRVWNVDELMVRKTPKPIGVMEHPHRSNIFSLEFDLE-NRFLYSGERWGT  128 (609)
T ss_pred             hhhhhhccccceeeeccCCeEEeecCCcceeeeechHHHHhhcCCCCceeccCccccceEEEEEccC-CeeEecCCCcce
Confidence            345689999999999999999999999999999998642      34444333 3478999999865 456789999999


Q ss_pred             EEEEecCCcceeeeecCCCCCCCCCCccCCCCcceEEEEECCCCCEEEEecCCCcEEEEEcccce-eeeee--cCCccce
Q 021247          127 VKLWDTATWNLIATLSIPRPEGLKPTDKSSSKKFVLSVAWSPDGRRIACGSMDGTISVFDVTRAK-FLHHL--EGHFMPV  203 (315)
Q Consensus       127 i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~s~dg~i~i~d~~~~~-~~~~~--~~~~~~v  203 (315)
                      |.+.|+.+.+.+..+.-.           .....|..+..+|..+.|++.+.++.|.+||.+... ...-+  -......
T Consensus       129 VI~HDiEt~qsi~V~~~~-----------~~~~~VY~m~~~P~DN~~~~~t~~~~V~~~D~Rd~~~~~~~~~~AN~~~~F  197 (609)
T KOG4227|consen  129 VIKHDIETKQSIYVANEN-----------NNRGDVYHMDQHPTDNTLIVVTRAKLVSFIDNRDRQNPISLVLPANSGKNF  197 (609)
T ss_pred             eEeeecccceeeeeeccc-----------CcccceeecccCCCCceEEEEecCceEEEEeccCCCCCCceeeecCCCccc
Confidence            999999987766555321           123348889999999999999999999999987544 22221  1223456


Q ss_pred             EEEEEcCCCCcEEEEEeCCCeEEEEeCCCCe-eEEE------eecccccEEEEEEcCCCCeEEEEeCCCcEEEEecCccc
Q 021247          204 RSLVYSPVDPRVLFSASDDTHVHMYDAEGKS-LVTA------MSGHASWVLSVDASPDGAAITTGSSDRTVKLWDLNMRA  276 (315)
Q Consensus       204 ~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~-~~~~------~~~~~~~i~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~  276 (315)
                      ..+.|+|..+.+|++.+.-+-+-+||.+... .+.+      +......-+++.|+|+|..|++--....=.+||+-+.+
T Consensus       198 ~t~~F~P~~P~Li~~~~~~~G~~~~D~R~~~~~~~~~~~~~~L~~~~~~~M~~~~~~~G~Q~msiRR~~~P~~~D~~S~R  277 (609)
T KOG4227|consen  198 YTAEFHPETPALILVNSETGGPNVFDRRMQARPVYQRSMFKGLPQENTEWMGSLWSPSGNQFMSIRRGKCPLYFDFISQR  277 (609)
T ss_pred             eeeeecCCCceeEEeccccCCCCceeeccccchHHhhhccccCcccchhhhheeeCCCCCeehhhhccCCCEEeeeeccc
Confidence            7888999999999999999999999987532 1211      11112223567899999988877666666678886633


Q ss_pred             e-ehcccccc-------cceEEEEEeeCCCEEEEEeCCCcEEEeec
Q 021247          277 A-MQSMTNHT-------DQVWGVSFRPLGGRVVSVSDDKSISLYEY  314 (315)
Q Consensus       277 ~-~~~~~~~~-------~~v~~~~~s~~~~~l~s~~~d~~i~i~~~  314 (315)
                      + +..+ .|.       ..+.++.|-.+- .+++|+++=.|.+|.+
T Consensus       278 ~~V~k~-D~N~~GY~N~~T~KS~~F~~D~-~v~tGSD~~~i~~Wkl  321 (609)
T KOG4227|consen  278 CFVLKS-DHNPNGYCNIKTIKSMTFIDDY-TVATGSDHWGIHIWKL  321 (609)
T ss_pred             ceeEec-cCCCCcceeeeeeeeeeeecce-eeeccCcccceEEEec
Confidence            3 3222 232       246677887664 4999999999999986

>KOG1963 consensus WD40 repeat protein [General function prediction only]

Probab=99.77  E-value=8.4e-16  Score=134.42  Aligned_cols=276  Identities=18%  Similarity=0.200  Sum_probs=185.8

Q ss_pred             EEEeeCCCcEEEEcCCCCcceeeccccccceEEEEeCCCC---CEEEEeeCCCeEEEEECCCCceeEEeeCCcccEEEEE
Q 021247           33 LLTGSLDETVKLWRPDDMQLERTNTGHCLGVVSVAAHPSG---IIAASASLDSFVRVFDVDTNASIATLEASPSEVWQMQ  109 (315)
Q Consensus        33 l~sgs~d~~v~~w~~~~~~~~~~~~~h~~~v~~~~~~~~g---~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~v~~~~  109 (315)
                      .+-+..+..|++|...++++...+.+|..++.++.+.|..   .++.+.+.||+|++||...+..++++..+ .++..+.
T Consensus        30 ~l~~~~~~~V~VyS~~Tg~~i~~l~~~~a~l~s~~~~~~~~~~~~~~~~sl~G~I~vwd~~~~~Llkt~~~~-~~v~~~~  108 (792)
T KOG1963|consen   30 FLFLCTGNFVKVYSTATGECITSLEDHTAPLTSVIVLPSSENANYLIVCSLDGTIRVWDWSDGELLKTFDNN-LPVHALV  108 (792)
T ss_pred             EEEEeeCCEEEEEecchHhhhhhcccccCccceeeecCCCccceEEEEEecCccEEEecCCCcEEEEEEecC-CceeEEE
Confidence            4445667899999999999999999999999999987754   46779999999999999999888887654 3344444


Q ss_pred             ECCCC---CeEEEEecCCCeE-EEEecCCcceeeeecCCCCCCCCCCccCCCCcceEEEEECCCCCEEEEecCCCcEEEE
Q 021247          110 FDPKG---TTLAVAGGGSASV-KLWDTATWNLIATLSIPRPEGLKPTDKSSSKKFVLSVAWSPDGRRIACGSMDGTISVF  185 (315)
Q Consensus       110 ~~~~~---~~~~~~~~~d~~i-~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~s~dg~i~i~  185 (315)
                      +.|.-   ...+..+..+..+ ........+....+.+......+......+.. -.++.+++.|+..+...+ ..+.+|
T Consensus       109 ~~~~~a~~s~~~~~s~~~~~~~~~~s~~~~~q~~~~~~~t~~~~~~d~~~~~~~-~~~I~~~~~ge~~~i~~~-~~~~~~  186 (792)
T KOG1963|consen  109 YKPAQADISANVYVSVEDYSILTTFSKKLSKQSSRFVLATFDSAKGDFLKEHQE-PKSIVDNNSGEFKGIVHM-CKIHIY  186 (792)
T ss_pred             echhHhCccceeEeecccceeeeecccccccceeeeEeeeccccchhhhhhhcC-CccEEEcCCceEEEEEEe-eeEEEE
Confidence            43311   1122222222111 11111111111111111110000000011111 356788888877766654 467788


Q ss_pred             Ecccceee----eeecCCccceEEEEEcCCCCcEEEEEeCCCeEEEEeCCCC----eeEEEeecccccEEEEEEcCCCCe
Q 021247          186 DVTRAKFL----HHLEGHFMPVRSLVYSPVDPRVLFSASDDTHVHMYDAEGK----SLVTAMSGHASWVLSVDASPDGAA  257 (315)
Q Consensus       186 d~~~~~~~----~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~----~~~~~~~~~~~~i~~~~~~~~~~~  257 (315)
                      ........    ..-..|...+++.+++| ++++++++..||.|.+|.--+.    .....+.=|...|++++|+++|.+
T Consensus       187 ~v~~~~~~~~~~~~~~~Htf~~t~~~~sp-n~~~~Aa~d~dGrI~vw~d~~~~~~~~t~t~lHWH~~~V~~L~fS~~G~~  265 (792)
T KOG1963|consen  187 FVPKHTKHTSSRDITVHHTFNITCVALSP-NERYLAAGDSDGRILVWRDFGSSDDSETCTLLHWHHDEVNSLSFSSDGAY  265 (792)
T ss_pred             EecccceeeccchhhhhhcccceeEEecc-ccceEEEeccCCcEEEEeccccccccccceEEEecccccceeEEecCCce
Confidence            77654311    11134777789999999 7889999999999999974431    112233447889999999999999


Q ss_pred             EEEEeCCCcEEEEecCccceehcccccccceEEEEEeeCCCEEEEEeCCCcEEEee
Q 021247          258 ITTGSSDRTVKLWDLNMRAAMQSMTNHTDQVWGVSFRPLGGRVVSVSDDKSISLYE  313 (315)
Q Consensus       258 l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~i~i~~  313 (315)
                      |++||..+.+.+|.+.+++ .+-++.-..+|..+.+|||+.+.+...+|..|.+-.
T Consensus       266 LlSGG~E~VLv~Wq~~T~~-kqfLPRLgs~I~~i~vS~ds~~~sl~~~DNqI~li~  320 (792)
T KOG1963|consen  266 LLSGGREGVLVLWQLETGK-KQFLPRLGSPILHIVVSPDSDLYSLVLEDNQIHLIK  320 (792)
T ss_pred             EeecccceEEEEEeecCCC-cccccccCCeeEEEEEcCCCCeEEEEecCceEEEEe
Confidence            9999999999999999876 333455668999999999999999999999998754

>KOG3881 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.76  E-value=6.3e-16  Score=123.65  Aligned_cols=273  Identities=12%  Similarity=0.212  Sum_probs=193.6

Q ss_pred             cccceEEEEEeecCCCCCcEEEEeeCCCcEEEEcCCCCcceeec------cccccceEEEEeCCCCCEEEEeeCCCeEEE
Q 021247           13 HEESVWAVTWVPATETRPALLLTGSLDETVKLWRPDDMQLERTN------TGHCLGVVSVAAHPSGIIAASASLDSFVRV   86 (315)
Q Consensus        13 h~~~v~~v~~~~~~~~~~~~l~sgs~d~~v~~w~~~~~~~~~~~------~~h~~~v~~~~~~~~g~~l~s~~~d~~i~~   86 (315)
                      -.+.|..++|..+++.  .++...+.|..+..+......+....      ..-..+|..+.. .+| .|+++-.+|.+++
T Consensus        54 ~~~ris~l~~~~d~~t--evl~~r~~~~~~~~~~~~E~~~~s~~~~~~~~~l~~~~I~gl~~-~dg-~Litc~~sG~l~~  129 (412)
T KOG3881|consen   54 ELDRISSLLFGVDGET--EVLNARSADDDLPKFVIEEFEISSSLDDAKTVSLGTKSIKGLKL-ADG-TLITCVSSGNLQV  129 (412)
T ss_pred             hhhhhhhheeecCCce--eEeeccccCcccccccccCCccccccccccccccccccccchhh-cCC-EEEEEecCCcEEE
Confidence            3557888888865542  35555557777776665554443322      222334444433 234 5566677899999


Q ss_pred             EECCCCc----eeEEeeCCcccEEEEEECCCCCeEEEEecCC--CeEEEEecCCcceeeeecCCCCCCCCCCccCCCCcc
Q 021247           87 FDVDTNA----SIATLEASPSEVWQMQFDPKGTTLAVAGGGS--ASVKLWDTATWNLIATLSIPRPEGLKPTDKSSSKKF  160 (315)
Q Consensus        87 w~~~~~~----~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d--~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  160 (315)
                      |..+.+.    ....+..+ ..+..|.-+|...+++++|+..  ..+.+||+.+.+.+..-...+...+.    -.-.-+
T Consensus       130 ~~~k~~d~hss~l~~la~g-~g~~~~r~~~~~p~Iva~GGke~~n~lkiwdle~~~qiw~aKNvpnD~L~----LrVPvW  204 (412)
T KOG3881|consen  130 RHDKSGDLHSSKLIKLATG-PGLYDVRQTDTDPYIVATGGKENINELKIWDLEQSKQIWSAKNVPNDRLG----LRVPVW  204 (412)
T ss_pred             EeccCCccccccceeeecC-CceeeeccCCCCCceEecCchhcccceeeeecccceeeeeccCCCCcccc----ceeeee
Confidence            9988543    22233322 4567777788888898889988  88999999987666544322211110    011345


Q ss_pred             eEEEEECCC--CCEEEEecCCCcEEEEEcccce-eeeeecCCccceEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCeeEE
Q 021247          161 VLSVAWSPD--GRRIACGSMDGTISVFDVTRAK-FLHHLEGHFMPVRSLVYSPVDPRVLFSASDDTHVHMYDAEGKSLVT  237 (315)
Q Consensus       161 i~~~~~~~~--~~~l~~~s~dg~i~i~d~~~~~-~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~  237 (315)
                      ++.+.|-+.  .+.|++++.-+.+++||.+.++ ++..+.-.+.++.++...| .+..+++|..-+.+..||.+++.+..
T Consensus       205 ~tdi~Fl~g~~~~~fat~T~~hqvR~YDt~~qRRPV~~fd~~E~~is~~~l~p-~gn~Iy~gn~~g~l~~FD~r~~kl~g  283 (412)
T KOG3881|consen  205 ITDIRFLEGSPNYKFATITRYHQVRLYDTRHQRRPVAQFDFLENPISSTGLTP-SGNFIYTGNTKGQLAKFDLRGGKLLG  283 (412)
T ss_pred             eccceecCCCCCceEEEEecceeEEEecCcccCcceeEeccccCcceeeeecC-CCcEEEEecccchhheecccCceeec
Confidence            788999886  7899999999999999998654 5566666677899999998 67889999999999999999988776


Q ss_pred             E-eecccccEEEEEEcCCCCeEEEEeCCCcEEEEecCccceehcccccccceEEEEEeeC
Q 021247          238 A-MSGHASWVLSVDASPDGAAITTGSSDRTVKLWDLNMRAAMQSMTNHTDQVWGVSFRPL  296 (315)
Q Consensus       238 ~-~~~~~~~i~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~  296 (315)
                      . +.+..+.|.++..+|.+++++++|-|+.|||+|+.++++++.. .-...++.+.+.++
T Consensus       284 ~~~kg~tGsirsih~hp~~~~las~GLDRyvRIhD~ktrkll~kv-YvKs~lt~il~~~~  342 (412)
T KOG3881|consen  284 CGLKGITGSIRSIHCHPTHPVLASCGLDRYVRIHDIKTRKLLHKV-YVKSRLTFILLRDD  342 (412)
T ss_pred             cccCCccCCcceEEEcCCCceEEeeccceeEEEeecccchhhhhh-hhhccccEEEecCC
Confidence            5 7888999999999999999999999999999999997665542 22345566666554

>KOG1334 consensus WD40 repeat protein [General function prediction only]

Probab=99.75  E-value=1.7e-17  Score=136.08  Aligned_cols=255  Identities=18%  Similarity=0.287  Sum_probs=194.0

Q ss_pred             hhhccccceEEEEEeecCCCCCcEEEEeeCCCcEEEEcCCC-Ccc--eeeccccccceEEEEeCCCC-CEEEEeeCCCeE
Q 021247            9 VENAHEESVWAVTWVPATETRPALLLTGSLDETVKLWRPDD-MQL--ERTNTGHCLGVVSVAAHPSG-IIAASASLDSFV   84 (315)
Q Consensus         9 ~~~~h~~~v~~v~~~~~~~~~~~~l~sgs~d~~v~~w~~~~-~~~--~~~~~~h~~~v~~~~~~~~g-~~l~s~~~d~~i   84 (315)
                      +..+|...|+.-.|.|....  ..+++.+.||.|++=.... ..+  .+.+..|.++|..++..|+. ..|.+++.|+.+
T Consensus       180 f~SGH~~NvfQaKFiP~s~d--~ti~~~s~dgqvr~s~i~~t~~~e~t~rl~~h~g~vhklav~p~sp~~f~S~geD~~v  257 (559)
T KOG1334|consen  180 FESGHCNNVFQAKFIPFSGD--RTIVTSSRDGQVRVSEILETGYVENTKRLAPHEGPVHKLAVEPDSPKPFLSCGEDAVV  257 (559)
T ss_pred             cccccccchhhhhccCCCCC--cCceeccccCceeeeeeccccceecceecccccCccceeeecCCCCCcccccccccce
Confidence            34699999999999997643  3689999999998776432 222  34566799999999999876 678899999999


Q ss_pred             EEEECCCCceeE---EeeCCcc---cEEEEEECCCCCeEEEEecCCCeEEEEecCCccee------eeecCCCCCCCCCC
Q 021247           85 RVFDVDTNASIA---TLEASPS---EVWQMQFDPKGTTLAVAGGGSASVKLWDTATWNLI------ATLSIPRPEGLKPT  152 (315)
Q Consensus        85 ~~w~~~~~~~~~---~~~~~~~---~v~~~~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~------~~~~~~~~~~~~~~  152 (315)
                      .-+|+..+....   +-+.+..   ....++.+|...+.+++++.|..+++||.+....-      .++..+       .
T Consensus       258 ~~~Dlr~~~pa~~~~cr~~~~~~~v~L~~Ia~~P~nt~~faVgG~dqf~RvYD~R~~~~e~~n~~~~~f~p~-------h  330 (559)
T KOG1334|consen  258 FHIDLRQDVPAEKFVCREADEKERVGLYTIAVDPRNTNEFAVGGSDQFARVYDQRRIDKEENNGVLDKFCPH-------H  330 (559)
T ss_pred             eeeeeccCCccceeeeeccCCccceeeeeEecCCCCccccccCChhhhhhhhcccchhhccccchhhhcCCc-------c
Confidence            999998765432   2233333   46788899999888889999999999998763321      111110       0


Q ss_pred             ccCCCCcceEEEEECCCCCEEEEecCCCcEEEEEcccc------------eeeee-ecCCcc--ceEEEEEcCCCCcEEE
Q 021247          153 DKSSSKKFVLSVAWSPDGRRIACGSMDGTISVFDVTRA------------KFLHH-LEGHFM--PVRSLVYSPVDPRVLF  217 (315)
Q Consensus       153 ~~~~~~~~i~~~~~~~~~~~l~~~s~dg~i~i~d~~~~------------~~~~~-~~~~~~--~v~~~~~~~~~~~~l~  217 (315)
                      ......-.|++++|+.++.-|+++..|-.|+++.-..+            ..... +++|..  .|..+.|.-....+++
T Consensus       331 l~~d~~v~ITgl~Ysh~~sElLaSYnDe~IYLF~~~~~~G~~p~~~s~~~~~~k~vYKGHrN~~TVKgVNFfGPrsEyVv  410 (559)
T KOG1334|consen  331 LVEDDPVNITGLVYSHDGSELLASYNDEDIYLFNKSMGDGSEPDPSSPREQYVKRVYKGHRNSRTVKGVNFFGPRSEYVV  410 (559)
T ss_pred             ccccCcccceeEEecCCccceeeeecccceEEeccccccCCCCCCCcchhhccchhhcccccccccceeeeccCccceEE
Confidence            11122334899999998888888889999999954322            12222 567743  4777777655788999


Q ss_pred             EEeCCCeEEEEeCCCCeeEEEeecccccEEEEEEcCCCCeEEEEeCCCcEEEEec
Q 021247          218 SASDDTHVHMYDAEGKSLVTAMSGHASWVLSVDASPDGAAITTGSSDRTVKLWDL  272 (315)
Q Consensus       218 s~~~d~~i~~wd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~d~~i~iwd~  272 (315)
                      +|++-|+|.+|+.++++++..+.+...-|+||.-+|.-.+||+.|-|..|+||--
T Consensus       411 SGSDCGhIFiW~K~t~eii~~MegDr~VVNCLEpHP~~PvLAsSGid~DVKIWTP  465 (559)
T KOG1334|consen  411 SGSDCGHIFIWDKKTGEIIRFMEGDRHVVNCLEPHPHLPVLASSGIDHDVKIWTP  465 (559)
T ss_pred             ecCccceEEEEecchhHHHHHhhcccceEeccCCCCCCchhhccCCccceeeecC
Confidence            9999999999999999999888877678999999999999999999999999965

>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=99.74  E-value=8.5e-18  Score=137.00  Aligned_cols=231  Identities=16%  Similarity=0.219  Sum_probs=184.5

Q ss_pred             cceEEEEeCCCCCEEEEeeCCCeEEEEECCCCceeEEeeCCcccEEEEEECCCCCeEEEEecCCCeEEEEecCCcceeee
Q 021247           61 LGVVSVAAHPSGIIAASASLDSFVRVFDVDTNASIATLEASPSEVWQMQFDPKGTTLAVAGGGSASVKLWDTATWNLIAT  140 (315)
Q Consensus        61 ~~v~~~~~~~~g~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~  140 (315)
                      .+...+.++.+|..++.++..|.+-.+|..+......+.. ...|.++.|-.+..++++  .....+.+||-.. ..+.-
T Consensus       130 FGPY~~~ytrnGrhlllgGrKGHlAa~Dw~t~~L~~Ei~v-~Etv~Dv~~LHneq~~AV--AQK~y~yvYD~~G-tElHC  205 (545)
T KOG1272|consen  130 FGPYHLDYTRNGRHLLLGGRKGHLAAFDWVTKKLHFEINV-METVRDVTFLHNEQFFAV--AQKKYVYVYDNNG-TELHC  205 (545)
T ss_pred             cCCeeeeecCCccEEEecCCccceeeeecccceeeeeeeh-hhhhhhhhhhcchHHHHh--hhhceEEEecCCC-cEEee
Confidence            3567888999999999999999999999999877666543 345778888766665543  3567899999653 22222


Q ss_pred             ecCCCCCCCCCCccCCCCcceEEEEECCCCCEEEEecCCCcEEEEEcccceeeeeecCCccceEEEEEcCCCCcEEEEEe
Q 021247          141 LSIPRPEGLKPTDKSSSKKFVLSVAWSPDGRRIACGSMDGTISVFDVTRAKFLHHLEGHFMPVRSLVYSPVDPRVLFSAS  220 (315)
Q Consensus       141 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~s~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~  220 (315)
                      +.              ....+..+.|-|-.-+|++++..|.++.-|+.+|+.+..+....+.+..+.-+|.+ ..+-.|.
T Consensus       206 lk--------------~~~~v~rLeFLPyHfLL~~~~~~G~L~Y~DVS~GklVa~~~t~~G~~~vm~qNP~N-aVih~Gh  270 (545)
T KOG1272|consen  206 LK--------------RHIRVARLEFLPYHFLLVAASEAGFLKYQDVSTGKLVASIRTGAGRTDVMKQNPYN-AVIHLGH  270 (545)
T ss_pred             hh--------------hcCchhhhcccchhheeeecccCCceEEEeechhhhhHHHHccCCccchhhcCCcc-ceEEEcC
Confidence            21              11236788899988889999999999999999999999888888888888888854 4788899


Q ss_pred             CCCeEEEEeCCCCeeEEEeecccccEEEEEEcCCCCeEEEEeCCCcEEEEecCccceehcccccccceEEEEEeeCCCEE
Q 021247          221 DDTHVHMYDAEGKSLVTAMSGHASWVLSVDASPDGAAITTGSSDRTVKLWDLNMRAAMQSMTNHTDQVWGVSFRPLGGRV  300 (315)
Q Consensus       221 ~d~~i~~wd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l  300 (315)
                      ..|+|.+|.....+.+..+..|.++|.++++.++|++++|.|.|+.++|||++....++++.. .-+...+++|-.|  +
T Consensus       271 snGtVSlWSP~skePLvKiLcH~g~V~siAv~~~G~YMaTtG~Dr~~kIWDlR~~~ql~t~~t-p~~a~~ls~Sqkg--l  347 (545)
T KOG1272|consen  271 SNGTVSLWSPNSKEPLVKILCHRGPVSSIAVDRGGRYMATTGLDRKVKIWDLRNFYQLHTYRT-PHPASNLSLSQKG--L  347 (545)
T ss_pred             CCceEEecCCCCcchHHHHHhcCCCcceEEECCCCcEEeecccccceeEeeeccccccceeec-CCCcccccccccc--c
Confidence            999999999999988888899999999999999999999999999999999998776665543 2456678888654  5


Q ss_pred             EEEeCCCcEEEee
Q 021247          301 VSVSDDKSISLYE  313 (315)
Q Consensus       301 ~s~~~d~~i~i~~  313 (315)
                      +++|...-+.||.
T Consensus       348 LA~~~G~~v~iw~  360 (545)
T KOG1272|consen  348 LALSYGDHVQIWK  360 (545)
T ss_pred             eeeecCCeeeeeh
Confidence            5666666777774

>PRK03629 tolB translocation protein TolB; Provisional

Probab=99.74  E-value=5.1e-15  Score=128.42  Aligned_cols=236  Identities=15%  Similarity=0.135  Sum_probs=153.8

Q ss_pred             cEEEEcCCCCcceeeccccccceEEEEeCCCCCEEEEee---CCCeEEEEECCCCceeEEeeCCcccEEEEEECCCCCeE
Q 021247           41 TVKLWRPDDMQLERTNTGHCLGVVSVAAHPSGIIAASAS---LDSFVRVFDVDTNASIATLEASPSEVWQMQFDPKGTTL  117 (315)
Q Consensus        41 ~v~~w~~~~~~~~~~~~~h~~~v~~~~~~~~g~~l~s~~---~d~~i~~w~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~  117 (315)
                      .|.++|.+.... +.+..+...+.+..|+|+|+.|+..+   .+..+++|++.+++... +......+...+|+|+|+.+
T Consensus       180 ~l~~~d~dg~~~-~~lt~~~~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~~-l~~~~~~~~~~~~SPDG~~L  257 (429)
T PRK03629        180 ELRVSDYDGYNQ-FVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQ-VASFPRHNGAPAFSPDGSKL  257 (429)
T ss_pred             eEEEEcCCCCCC-EEeecCCCceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCeEE-ccCCCCCcCCeEECCCCCEE
Confidence            688888765543 33334556789999999999887543   24579999998875433 22233345568999999988


Q ss_pred             EEEecCCC--eEEEEecCCcceeeeecCCCCCCCCCCccCCCCcceEEEEECCCCCEEEEecCC-C--cEEEEEccccee
Q 021247          118 AVAGGGSA--SVKLWDTATWNLIATLSIPRPEGLKPTDKSSSKKFVLSVAWSPDGRRIACGSMD-G--TISVFDVTRAKF  192 (315)
Q Consensus       118 ~~~~~~d~--~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~s~d-g--~i~i~d~~~~~~  192 (315)
                      +++...++  .|.+||+.+++......              ....+....|+|+|+.|+..+.+ +  .|+.+|+.+++.
T Consensus       258 a~~~~~~g~~~I~~~d~~tg~~~~lt~--------------~~~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~~~g~~  323 (429)
T PRK03629        258 AFALSKTGSLNLYVMDLASGQIRQVTD--------------GRSNNTEPTWFPDSQNLAYTSDQAGRPQVYKVNINGGAP  323 (429)
T ss_pred             EEEEcCCCCcEEEEEECCCCCEEEccC--------------CCCCcCceEECCCCCEEEEEeCCCCCceEEEEECCCCCe
Confidence            87655444  58889998765432211              11125678999999988776654 3  455557765543


Q ss_pred             eeeecCCccceEEEEEcCCCCcEEEEEeCC--CeEEEEeCCCCeeEEEeecccccEEEEEEcCCCCeEEEEeCCCc---E
Q 021247          193 LHHLEGHFMPVRSLVYSPVDPRVLFSASDD--THVHMYDAEGKSLVTAMSGHASWVLSVDASPDGAAITTGSSDRT---V  267 (315)
Q Consensus       193 ~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d--~~i~~wd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~d~~---i  267 (315)
                       ..+..+........|+|++..+++++..+  ..|.+||+.++.... +... .......|+|||+.|+.++.++.   +
T Consensus       324 -~~lt~~~~~~~~~~~SpDG~~Ia~~~~~~g~~~I~~~dl~~g~~~~-Lt~~-~~~~~p~~SpDG~~i~~~s~~~~~~~l  400 (429)
T PRK03629        324 -QRITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQV-LTDT-FLDETPSIAPNGTMVIYSSSQGMGSVL  400 (429)
T ss_pred             -EEeecCCCCccCEEECCCCCEEEEEEccCCCceEEEEECCCCCeEE-eCCC-CCCCCceECCCCCEEEEEEcCCCceEE
Confidence             23333333455688999544444444333  458889988775432 2221 12345789999999988888765   6


Q ss_pred             EEEecCccceehcccccccceEEEEEeeC
Q 021247          268 KLWDLNMRAAMQSMTNHTDQVWGVSFRPL  296 (315)
Q Consensus       268 ~iwd~~~~~~~~~~~~~~~~v~~~~~s~~  296 (315)
                      .+++++ ++....+..|.+.+...+|+|-
T Consensus       401 ~~~~~~-G~~~~~l~~~~~~~~~p~Wsp~  428 (429)
T PRK03629        401 NLVSTD-GRFKARLPATDGQVKFPAWSPY  428 (429)
T ss_pred             EEEECC-CCCeEECccCCCCcCCcccCCC
Confidence            667774 4445556677788888899873

>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3

Probab=99.73  E-value=9.7e-14  Score=117.18  Aligned_cols=282  Identities=19%  Similarity=0.275  Sum_probs=178.3

Q ss_pred             EEEeeCC----CcEEEEcC--CCCcceeec-cccccceEEEEeCCCCCEEEEeeC----CCeEEEEECCCC--c--eeEE
Q 021247           33 LLTGSLD----ETVKLWRP--DDMQLERTN-TGHCLGVVSVAAHPSGIIAASASL----DSFVRVFDVDTN--A--SIAT   97 (315)
Q Consensus        33 l~sgs~d----~~v~~w~~--~~~~~~~~~-~~h~~~v~~~~~~~~g~~l~s~~~----d~~i~~w~~~~~--~--~~~~   97 (315)
                      ++.|+.+    +.|..|++  ++.++.... ..-......+.++|++.+|.++..    ++.|..|.+...  .  .+..
T Consensus         2 ~~vgsy~~~~~~gI~~~~~d~~~g~l~~~~~~~~~~~Ps~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~~   81 (345)
T PF10282_consen    2 LYVGSYTNGKGGGIYVFRFDEETGTLTLVQTVAEGENPSWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLNS   81 (345)
T ss_dssp             EEEEECCSSSSTEEEEEEEETTTTEEEEEEEEEESSSECCEEE-TTSSEEEEEETTSSTTTEEEEEEEETTTTEEEEEEE
T ss_pred             EEEEcCCCCCCCcEEEEEEcCCCCCceEeeeecCCCCCceEEEEeCCCEEEEEEccccCCCCEEEEEECCCcceeEEeee
Confidence            5667766    68888877  344443221 112334567889999999988866    578999988775  2  2333


Q ss_pred             eeCCcccEEEEEECCCCCeEEEEecCCCeEEEEecCC-cceeeeecCCCCCCCCCCccCCCCcceEEEEECCCCCEEEEe
Q 021247           98 LEASPSEVWQMQFDPKGTTLAVAGGGSASVKLWDTAT-WNLIATLSIPRPEGLKPTDKSSSKKFVLSVAWSPDGRRIACG  176 (315)
Q Consensus        98 ~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~~d~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~  176 (315)
                      ..........++++|++++++++.-.++.+.++++.. +.+..........+..+....+......++.++|+++++++.
T Consensus        82 ~~~~g~~p~~i~~~~~g~~l~vany~~g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v~  161 (345)
T PF10282_consen   82 VPSGGSSPCHIAVDPDGRFLYVANYGGGSVSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYVP  161 (345)
T ss_dssp             EEESSSCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEEE
T ss_pred             eccCCCCcEEEEEecCCCEEEEEEccCCeEEEEEccCCcccceeeeecccCCCCCcccccccccceeEEECCCCCEEEEE
Confidence            3333445567899999999998888899999999976 333222111100011111112233447789999999988765


Q ss_pred             c-CCCcEEEEEcccce--ee--eeec-CCccceEEEEEcCCCCcEEEEEeCCCeEEEEeCC--CCee--EEEeec-----
Q 021247          177 S-MDGTISVFDVTRAK--FL--HHLE-GHFMPVRSLVYSPVDPRVLFSASDDTHVHMYDAE--GKSL--VTAMSG-----  241 (315)
Q Consensus       177 s-~dg~i~i~d~~~~~--~~--~~~~-~~~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~--~~~~--~~~~~~-----  241 (315)
                      . ....|.+|++....  ..  ..+. ......+.+.|+|++..+++..-.++.|.+|+..  .+.+  +.....     
T Consensus       162 dlG~D~v~~~~~~~~~~~l~~~~~~~~~~G~GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~~~~~~~  241 (345)
T PF10282_consen  162 DLGADRVYVYDIDDDTGKLTPVDSIKVPPGSGPRHLAFSPDGKYAYVVNELSNTVSVFDYDPSDGSLTEIQTISTLPEGF  241 (345)
T ss_dssp             ETTTTEEEEEEE-TTS-TEEEEEEEECSTTSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESCETTS
T ss_pred             ecCCCEEEEEEEeCCCceEEEeeccccccCCCCcEEEEcCCcCEEEEecCCCCcEEEEeecccCCceeEEEEeeeccccc
Confidence            3 34479999986544  21  2222 2334568999999666666777778999999877  4322  222221     


Q ss_pred             -ccccEEEEEEcCCCCeEEEEe-CCCcEEEEecCc--cc--eehcccccccceEEEEEeeCCCEEEEEe-CCCcEEEeec
Q 021247          242 -HASWVLSVDASPDGAAITTGS-SDRTVKLWDLNM--RA--AMQSMTNHTDQVWGVSFRPLGGRVVSVS-DDKSISLYEY  314 (315)
Q Consensus       242 -~~~~i~~~~~~~~~~~l~s~~-~d~~i~iwd~~~--~~--~~~~~~~~~~~v~~~~~s~~~~~l~s~~-~d~~i~i~~~  314 (315)
                       .......+.++|+|++|.++. ..+.|.+|+++.  ++  .+..+.......+.++++|+|++|+.+. .+++|.+|++
T Consensus       242 ~~~~~~~~i~ispdg~~lyvsnr~~~sI~vf~~d~~~g~l~~~~~~~~~G~~Pr~~~~s~~g~~l~Va~~~s~~v~vf~~  321 (345)
T PF10282_consen  242 TGENAPAEIAISPDGRFLYVSNRGSNSISVFDLDPATGTLTLVQTVPTGGKFPRHFAFSPDGRYLYVANQDSNTVSVFDI  321 (345)
T ss_dssp             CSSSSEEEEEE-TTSSEEEEEECTTTEEEEEEECTTTTTEEEEEEEEESSSSEEEEEE-TTSSEEEEEETTTTEEEEEEE
T ss_pred             cccCCceeEEEecCCCEEEEEeccCCEEEEEEEecCCCceEEEEEEeCCCCCccEEEEeCCCCEEEEEecCCCeEEEEEE
Confidence             122578899999999876554 567799999942  22  2333333345689999999999998666 5689999976

1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.

>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]

Probab=99.73  E-value=2.7e-15  Score=135.53  Aligned_cols=263  Identities=16%  Similarity=0.148  Sum_probs=177.0

Q ss_pred             EcCCCCcceeeccccccceEEEEeCCCC-CEEEEeeCCCeEEEEECCCC-------ceeEEeeCCcccEEEEEECCCCCe
Q 021247           45 WRPDDMQLERTNTGHCLGVVSVAAHPSG-IIAASASLDSFVRVFDVDTN-------ASIATLEASPSEVWQMQFDPKGTT  116 (315)
Q Consensus        45 w~~~~~~~~~~~~~h~~~v~~~~~~~~g-~~l~s~~~d~~i~~w~~~~~-------~~~~~~~~~~~~v~~~~~~~~~~~  116 (315)
                      |++ .+.+...+..|...+..++.++.. .++++||.||+||+||+..-       ++..++......+..+...+.+..
T Consensus      1034 W~p-~G~lVAhL~Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~~~~~~~ 1112 (1431)
T KOG1240|consen 1034 WNP-RGILVAHLHEHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVTMCGNGDQ 1112 (1431)
T ss_pred             CCc-cceEeehhhhccccccceeecCCCCceEEEecCCceEEEeeehhhhcCcceeeeeEEEeccCCceEEEEeccCCCe
Confidence            544 344566677888899998887655 99999999999999998642       233455555678888999888888


Q ss_pred             EEEEecCCCeEEEEecCCcceeeeecCCCCCCCCCCccCCCCcceEEEEECCC-C-CEEEEecCCCcEEEEEcccceeee
Q 021247          117 LAVAGGGSASVKLWDTATWNLIATLSIPRPEGLKPTDKSSSKKFVLSVAWSPD-G-RRIACGSMDGTISVFDVTRAKFLH  194 (315)
Q Consensus       117 ~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-~-~~l~~~s~dg~i~i~d~~~~~~~~  194 (315)
                      ++++ +.||.|.+.++...+..+....   ....+..+. ....+..-++... + ..++.++..+.|..||++......
T Consensus      1113 ~Av~-t~DG~v~~~~id~~~~~~~~~~---~~ri~n~~~-~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~~w 1187 (1431)
T KOG1240|consen 1113 FAVS-TKDGSVRVLRIDHYNVSKRVAT---QVRIPNLKK-DGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHDAW 1187 (1431)
T ss_pred             EEEE-cCCCeEEEEEccccccccceee---eeecccccC-CCceEEeecccccccceeEEEEEeccceEEecchhhhhHH
Confidence            7654 8999999999876322111100   000111111 1112333344332 3 377888999999999997655433


Q ss_pred             ee--cCCccceEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCeeEEEee-cccccEEEEEEcCCC---CeEEEE-e-CCCc
Q 021247          195 HL--EGHFMPVRSLVYSPVDPRVLFSASDDTHVHMYDAEGKSLVTAMS-GHASWVLSVDASPDG---AAITTG-S-SDRT  266 (315)
Q Consensus       195 ~~--~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~-~~~~~i~~~~~~~~~---~~l~s~-~-~d~~  266 (315)
                      .+  ....+.|++++.+| .+.+++.|+..|.+.+||++-+.++.... ++..+|+.+..+|-.   ...+++ . ..+.
T Consensus      1188 ~lk~~~~hG~vTSi~idp-~~~WlviGts~G~l~lWDLRF~~~i~sw~~P~~~~i~~v~~~~~~~~~S~~vs~~~~~~ne 1266 (1431)
T KOG1240|consen 1188 RLKNQLRHGLVTSIVIDP-WCNWLVIGTSRGQLVLWDLRFRVPILSWEHPARAPIRHVWLCPTYPQESVSVSAGSSSNNE 1266 (1431)
T ss_pred             hhhcCccccceeEEEecC-CceEEEEecCCceEEEEEeecCceeecccCcccCCcceEEeeccCCCCceEEEecccCCCc
Confidence            32  33457899999998 67799999999999999999877666543 445788888887742   344444 3 5788


Q ss_pred             EEEEecCccceehcccc-------------------cccceEEEEEeeCCCEEEEEeCCCcEEEeec
Q 021247          267 VKLWDLNMRAAMQSMTN-------------------HTDQVWGVSFRPLGGRVVSVSDDKSISLYEY  314 (315)
Q Consensus       267 i~iwd~~~~~~~~~~~~-------------------~~~~v~~~~~s~~~~~l~s~~~d~~i~i~~~  314 (315)
                      |.+|++..+....++-.                   +.-....+.+...+..+.+++.|..||.||.
T Consensus      1267 vs~wn~~~g~~~~vl~~s~~~p~ls~~~Ps~~~~kp~~~~~~~~~~~~~~~~~ltggsd~kIR~wD~ 1333 (1431)
T KOG1240|consen 1267 VSTWNMETGLRQTVLWASDGAPILSYALPSNDARKPDSLAGISCGVCEKNGFLLTGGSDMKIRKWDP 1333 (1431)
T ss_pred             eeeeecccCcceEEEEcCCCCcchhhhcccccCCCCCcccceeeecccCCceeeecCCccceeeccC
Confidence            99999987643322211                   1112223344444668899999999999996

>KOG2139 consensus WD40 repeat protein [General function prediction only]

Probab=99.72  E-value=3e-14  Score=113.19  Aligned_cols=283  Identities=17%  Similarity=0.232  Sum_probs=181.9

Q ss_pred             ccceEEEEEeecCCCCCcEEEEeeCCCcEEEEcCCCCcceeeccccccceEEEEeCCCCCEEEEeeCCCeEEEEECCCCc
Q 021247           14 EESVWAVTWVPATETRPALLLTGSLDETVKLWRPDDMQLERTNTGHCLGVVSVAAHPSGIIAASASLDSFVRVFDVDTNA   93 (315)
Q Consensus        14 ~~~v~~v~~~~~~~~~~~~l~sgs~d~~v~~w~~~~~~~~~~~~~h~~~v~~~~~~~~g~~l~s~~~d~~i~~w~~~~~~   93 (315)
                      +-.+-.++|.+-..    .++++..|.+|++|+-......+...-....|.+++|-|.+..-++.+..+.|-+|......
T Consensus        98 ~~dlr~~aWhqH~~----~fava~nddvVriy~ksst~pt~Lks~sQrnvtclawRPlsaselavgCr~gIciW~~s~tl  173 (445)
T KOG2139|consen   98 EIDLRGVAWHQHII----AFAVATNDDVVRIYDKSSTCPTKLKSVSQRNVTCLAWRPLSASELAVGCRAGICIWSDSRTL  173 (445)
T ss_pred             hcceeeEeechhhh----hhhhhccCcEEEEeccCCCCCceecchhhcceeEEEeccCCcceeeeeecceeEEEEcCccc
Confidence            44678899988433    48999999999999865432222222334579999999977555555556669999875432


Q ss_pred             ee------------EEee-CCcccEEEEEECCCCCeEEEEecCCCeEEEEecCCcceeeeecCCCCCCCCCCccCCCCcc
Q 021247           94 SI------------ATLE-ASPSEVWQMQFDPKGTTLAVAGGGSASVKLWDTATWNLIATLSIPRPEGLKPTDKSSSKKF  160 (315)
Q Consensus        94 ~~------------~~~~-~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  160 (315)
                      ..            +.++ ....+|.+++|+++|..++-+.-++..|.+||..++..+.....             ....
T Consensus       174 n~~r~~~~~s~~~~qvl~~pgh~pVtsmqwn~dgt~l~tAS~gsssi~iWdpdtg~~~pL~~~-------------glgg  240 (445)
T KOG2139|consen  174 NANRNIRMMSTHHLQVLQDPGHNPVTSMQWNEDGTILVTASFGSSSIMIWDPDTGQKIPLIPK-------------GLGG  240 (445)
T ss_pred             ccccccccccccchhheeCCCCceeeEEEEcCCCCEEeecccCcceEEEEcCCCCCccccccc-------------CCCc
Confidence            11            1111 12268999999999998776667789999999987654432210             1123


Q ss_pred             eEEEEECCCCCEEEEecCCCcEEEEEcccceeeeeecCCccceEEEEEcCCCCcEEEEEeCCCeEEEEe--CCCCe----
Q 021247          161 VLSVAWSPDGRRIACGSMDGTISVFDVTRAKFLHHLEGHFMPVRSLVYSPVDPRVLFSASDDTHVHMYD--AEGKS----  234 (315)
Q Consensus       161 i~~~~~~~~~~~l~~~s~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd--~~~~~----  234 (315)
                      ++-+.|+|||.+|++++-|+..++|+..+...........+.|....|+|.+..+|++.+..-.++--.  -+...    
T Consensus       241 ~slLkwSPdgd~lfaAt~davfrlw~e~q~wt~erw~lgsgrvqtacWspcGsfLLf~~sgsp~lysl~f~~~~~~~~~~  320 (445)
T KOG2139|consen  241 FSLLKWSPDGDVLFAATCDAVFRLWQENQSWTKERWILGSGRVQTACWSPCGSFLLFACSGSPRLYSLTFDGEDSVFLRP  320 (445)
T ss_pred             eeeEEEcCCCCEEEEecccceeeeehhcccceecceeccCCceeeeeecCCCCEEEEEEcCCceEEEEeecCCCccccCc
Confidence            778999999999999999999999976544444444444558899999997777788887776655332  21111    


Q ss_pred             -------eEEEee------c---ccccEEEEEEcCCCCeEEEEeCCCc--------EEEEecCccceehcc----ccccc
Q 021247          235 -------LVTAMS------G---HASWVLSVDASPDGAAITTGSSDRT--------VKLWDLNMRAAMQSM----TNHTD  286 (315)
Q Consensus       235 -------~~~~~~------~---~~~~i~~~~~~~~~~~l~s~~~d~~--------i~iwd~~~~~~~~~~----~~~~~  286 (315)
                             ++..+.      +   -.+.+.+++|+|.|.+|++.-+.+.        |.+||.+.-..+.-.    .+ .+
T Consensus       321 ~~~k~~lliaDL~e~ti~ag~~l~cgeaq~lawDpsGeyLav~fKg~~~v~~~k~~i~~fdtr~sp~vels~cg~i~-ge  399 (445)
T KOG2139|consen  321 QSIKRVLLIADLQEVTICAGQRLCCGEAQCLAWDPSGEYLAVIFKGQSFVLLCKLHISRFDTRKSPPVELSYCGMIG-GE  399 (445)
T ss_pred             ccceeeeeeccchhhhhhcCcccccCccceeeECCCCCEEEEEEcCCchhhhhhhhhhhhcccccCceEEEeccccc-CC
Confidence                   111111      1   1467889999999999988765543        566776543322211    11 11


Q ss_pred             ceEEEEEeeC---CCEEEEEeCCCcEEEeec
Q 021247          287 QVWGVSFRPL---GGRVVSVSDDKSISLYEY  314 (315)
Q Consensus       287 ~v~~~~~s~~---~~~l~s~~~d~~i~i~~~  314 (315)
                      ...-+.|+|-   |..|..+=..|.|.-|++
T Consensus       400 ~P~~IsF~pl~n~g~lLsiaWsTGriq~ypl  430 (445)
T KOG2139|consen  400 YPAYISFGPLKNEGRLLSIAWSTGRIQRYPL  430 (445)
T ss_pred             CCceEEeeecccCCcEEEEEeccCceEeeee
Confidence            2334566653   444444445577776654

>KOG1310 consensus WD40 repeat protein [General function prediction only]

Probab=99.71  E-value=2.3e-16  Score=131.36  Aligned_cols=177  Identities=22%  Similarity=0.298  Sum_probs=132.7

Q ss_pred             ceeeccccccceEEEEeCCCCCEEEEeeCCCeEEEEECCCCceeEEe-eCCcccEEEEEECCCC-CeEEEEecCCCeEEE
Q 021247           52 LERTNTGHCLGVVSVAAHPSGIIAASASLDSFVRVFDVDTNASIATL-EASPSEVWQMQFDPKG-TTLAVAGGGSASVKL  129 (315)
Q Consensus        52 ~~~~~~~h~~~v~~~~~~~~g~~l~s~~~d~~i~~w~~~~~~~~~~~-~~~~~~v~~~~~~~~~-~~~~~~~~~d~~i~~  129 (315)
                      +...+.||++.|+++.|+.+|.+|++|+.|-.+.|||....+.+..+ .+|...|.++.|-|.. +.++++|.+|..|++
T Consensus        42 lE~eL~GH~GCVN~LeWn~dG~lL~SGSDD~r~ivWd~~~~KllhsI~TgHtaNIFsvKFvP~tnnriv~sgAgDk~i~l  121 (758)
T KOG1310|consen   42 LEAELTGHTGCVNCLEWNADGELLASGSDDTRLIVWDPFEYKLLHSISTGHTANIFSVKFVPYTNNRIVLSGAGDKLIKL  121 (758)
T ss_pred             hhhhhccccceecceeecCCCCEEeecCCcceEEeecchhcceeeeeecccccceeEEeeeccCCCeEEEeccCcceEEE
Confidence            45567899999999999999999999999999999999877666554 4678899999999864 567889999999999


Q ss_pred             EecCCcceeeeecCCCCCCCCCCccCCCCcceEEEEECCCC-CEEEEecCCCcEEEEEcccceee----------eeecC
Q 021247          130 WDTATWNLIATLSIPRPEGLKPTDKSSSKKFVLSVAWSPDG-RRIACGSMDGTISVFDVTRAKFL----------HHLEG  198 (315)
Q Consensus       130 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~l~~~s~dg~i~i~d~~~~~~~----------~~~~~  198 (315)
                      +|+...+.-..-   ...........-|...|..++..|++ +.|.++++||.++-+|++.....          ..+..
T Consensus       122 fdl~~~~~~~~d---~~~~~~~~~~~cht~rVKria~~p~~PhtfwsasEDGtirQyDiREph~c~p~~~~~~~l~ny~~  198 (758)
T KOG1310|consen  122 FDLDSSKEGGMD---HGMEETTRCWSCHTDRVKRIATAPNGPHTFWSASEDGTIRQYDIREPHVCNPDEDCPSILVNYNP  198 (758)
T ss_pred             Eecccccccccc---cCccchhhhhhhhhhhhhheecCCCCCceEEEecCCcceeeecccCCccCCccccccHHHHHhch
Confidence            999753321110   00000001112345567788888988 78899999999999999753211          01111


Q ss_pred             CccceEEEEEcCCCCcEEEEEeCCCeEEEEeCC
Q 021247          199 HFMPVRSLVYSPVDPRVLFSASDDTHVHMYDAE  231 (315)
Q Consensus       199 ~~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~  231 (315)
                      .--...++..+|.++.+|+.|+.|-..++||.+
T Consensus       199 ~lielk~ltisp~rp~~laVGgsdpfarLYD~R  231 (758)
T KOG1310|consen  199 QLIELKCLTISPSRPYYLAVGGSDPFARLYDRR  231 (758)
T ss_pred             hhheeeeeeecCCCCceEEecCCCchhhhhhhh
Confidence            223567899999999999999999999999964

>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]

Probab=99.71  E-value=4.5e-16  Score=118.41  Aligned_cols=248  Identities=20%  Similarity=0.231  Sum_probs=163.4

Q ss_pred             ccccceEEEEEeecCCCCCcEEEEeeCCCcEEEEcCCCCcceeeccccccceEEEEeCCC-----C----CEEEEe--eC
Q 021247           12 AHEESVWAVTWVPATETRPALLLTGSLDETVKLWRPDDMQLERTNTGHCLGVVSVAAHPS-----G----IIAASA--SL   80 (315)
Q Consensus        12 ~h~~~v~~v~~~~~~~~~~~~l~sgs~d~~v~~w~~~~~~~~~~~~~h~~~v~~~~~~~~-----g----~~l~s~--~~   80 (315)
                      .|+..|+.+.-.|..     -|.+-+.|..+.+|+......   ...|.-.++++-|.+.     +    ..++.-  +.
T Consensus        54 ~g~~~it~lq~~p~d-----~l~tqgRd~~L~lw~ia~s~~---i~i~Si~~nslgFCrfSl~~~~k~~eqll~yp~rgs  125 (323)
T KOG0322|consen   54 FGRLFITNLQSIPND-----SLDTQGRDPLLILWTIAYSAF---ISIHSIVVNSLGFCRFSLVKKPKNSEQLLEYPSRGS  125 (323)
T ss_pred             hccceeeceeecCCc-----chhhcCCCceEEEEEccCcce---EEEeeeeccccccccceeccCCCcchhheecCCccc
Confidence            678888888877753     389999999999999875433   2234445555555432     1    111111  11


Q ss_pred             CCeEEEEECCCCceeEEee----CCcccEEEEEECC--CCCeEEEEecCCCeEEEEecCCcceeeeecCCCCCCCCCCcc
Q 021247           81 DSFVRVFDVDTNASIATLE----ASPSEVWQMQFDP--KGTTLAVAGGGSASVKLWDTATWNLIATLSIPRPEGLKPTDK  154 (315)
Q Consensus        81 d~~i~~w~~~~~~~~~~~~----~~~~~v~~~~~~~--~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~  154 (315)
                      |. +++-|.-....+...+    ...+.+.+..+..  ....++++|-.+|.+.+||+.++..+-.+....+.   ....
T Consensus       126 de-~h~~D~g~~tqv~i~dd~~~~Klgsvmc~~~~~~c~s~~lllaGyEsghvv~wd~S~~~~~~~~~~~~kv---~~~~  201 (323)
T KOG0322|consen  126 DE-THKQDGGDTTQVQIADDSERSKLGSVMCQDKDHACGSTFLLLAGYESGHVVIWDLSTGDKIIQLPQSSKV---ESPN  201 (323)
T ss_pred             ch-hhhhccCccceeEccCchhccccCceeeeeccccccceEEEEEeccCCeEEEEEccCCceeecccccccc---ccch
Confidence            11 1111111111111111    1223455555322  23456778888999999999886443322111110   0112


Q ss_pred             CCCCcceEEEEECCCCCEEEEecCCCcEEEEEcccc--e--eeeeecCCccceEEEEEcCCCCcEEEEEeCCCeEEEEeC
Q 021247          155 SSSKKFVLSVAWSPDGRRIACGSMDGTISVFDVTRA--K--FLHHLEGHFMPVRSLVYSPVDPRVLFSASDDTHVHMYDA  230 (315)
Q Consensus       155 ~~~~~~i~~~~~~~~~~~l~~~s~dg~i~i~d~~~~--~--~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~  230 (315)
                      ..|+.++.++.+.+.-..=++|+.+-.+..|.+...  .  ........+..+..+.+-| +++++++++.|+.|++|..
T Consensus       202 ash~qpvlsldyas~~~rGisgga~dkl~~~Sl~~s~gslq~~~e~~lknpGv~gvrIRp-D~KIlATAGWD~RiRVysw  280 (323)
T KOG0322|consen  202 ASHKQPVLSLDYASSCDRGISGGADDKLVMYSLNHSTGSLQIRKEITLKNPGVSGVRIRP-DGKILATAGWDHRIRVYSW  280 (323)
T ss_pred             hhccCcceeeeechhhcCCcCCCccccceeeeeccccCcccccceEEecCCCccceEEcc-CCcEEeecccCCcEEEEEe
Confidence            346677999999987667778888888999987532  1  1222233345667778887 7889999999999999999


Q ss_pred             CCCeeEEEeecccccEEEEEEcCCCCeEEEEeCCCcEEEEec
Q 021247          231 EGKSLVTAMSGHASWVLSVDASPDGAAITTGSSDRTVKLWDL  272 (315)
Q Consensus       231 ~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~d~~i~iwd~  272 (315)
                      ++...+..+.-|.+.|++++|+|+..++|+++.|++|.+|++
T Consensus       281 rtl~pLAVLkyHsagvn~vAfspd~~lmAaaskD~rISLWkL  322 (323)
T KOG0322|consen  281 RTLNPLAVLKYHSAGVNAVAFSPDCELMAAASKDARISLWKL  322 (323)
T ss_pred             ccCCchhhhhhhhcceeEEEeCCCCchhhhccCCceEEeeec
Confidence            999999999999999999999999999999999999999986

>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=99.71  E-value=2.7e-13  Score=106.06  Aligned_cols=275  Identities=14%  Similarity=0.213  Sum_probs=176.7

Q ss_pred             ceEEEEEeecCCCCCcEEEEeeCCCcEEEEcCCCCcceeeccccccc--eEEEEeCCCCCEEEEeeCC------CeEEEE
Q 021247           16 SVWAVTWVPATETRPALLLTGSLDETVKLWRPDDMQLERTNTGHCLG--VVSVAAHPSGIIAASASLD------SFVRVF   87 (315)
Q Consensus        16 ~v~~v~~~~~~~~~~~~l~sgs~d~~v~~w~~~~~~~~~~~~~h~~~--v~~~~~~~~g~~l~s~~~d------~~i~~w   87 (315)
                      +...++|..+..     .++.+.|.-.++|+.+..+.......+..+  +..+-| ..+-+.+.||.+      ..+-||
T Consensus         7 ~~lsvs~NQD~S-----cFava~~~Gfriyn~~P~ke~~~r~~~~~G~~~veMLf-R~N~laLVGGg~~pky~pNkviIW   80 (346)
T KOG2111|consen    7 KTLSVSFNQDHS-----CFAVATDTGFRIYNCDPFKESASRQFIDGGFKIVEMLF-RSNYLALVGGGSRPKYPPNKVIIW   80 (346)
T ss_pred             ceeEEEEccCCc-----eEEEEecCceEEEecCchhhhhhhccccCchhhhhHhh-hhceEEEecCCCCCCCCCceEEEE
Confidence            444588876553     566677777899987654432222222222  111111 122222334333      469999


Q ss_pred             ECCCCceeEEeeCCcccEEEEEECCCCCeEEEEecCCCeEEEEecC-CcceeeeecCCC-CCCCCCCccCCCCcceEEEE
Q 021247           88 DVDTNASIATLEASPSEVWQMQFDPKGTTLAVAGGGSASVKLWDTA-TWNLIATLSIPR-PEGLKPTDKSSSKKFVLSVA  165 (315)
Q Consensus        88 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~~d~~-~~~~~~~~~~~~-~~~~~~~~~~~~~~~i~~~~  165 (315)
                      |=....++.++. ...+|.++.+.++  .+++.  -.+.|.||... +-+.+..+.... |.+            ..+++
T Consensus        81 DD~k~~~i~el~-f~~~I~~V~l~r~--riVvv--l~~~I~VytF~~n~k~l~~~et~~NPkG------------lC~~~  143 (346)
T KOG2111|consen   81 DDLKERCIIELS-FNSEIKAVKLRRD--RIVVV--LENKIYVYTFPDNPKLLHVIETRSNPKG------------LCSLC  143 (346)
T ss_pred             ecccCcEEEEEE-eccceeeEEEcCC--eEEEE--ecCeEEEEEcCCChhheeeeecccCCCc------------eEeec
Confidence            966667777665 3568999999865  34332  46799999876 334443332211 211            22222


Q ss_pred             ECCCCCEEEE-ecCCCcEEEEEccccee--eeeecCCccceEEEEEcCCCCcEEEEEeCCCe-EEEEeCCCCeeEEEeec
Q 021247          166 WSPDGRRIAC-GSMDGTISVFDVTRAKF--LHHLEGHFMPVRSLVYSPVDPRVLFSASDDTH-VHMYDAEGKSLVTAMSG  241 (315)
Q Consensus       166 ~~~~~~~l~~-~s~dg~i~i~d~~~~~~--~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~-i~~wd~~~~~~~~~~~~  241 (315)
                      -..+...||. |-.-|.|.+-|+...+.  ...+..|...|.+++.+- ++.++++++..|+ |+|||..+++.+.+++-
T Consensus       144 ~~~~k~~LafPg~k~GqvQi~dL~~~~~~~p~~I~AH~s~Iacv~Ln~-~Gt~vATaStkGTLIRIFdt~~g~~l~E~RR  222 (346)
T KOG2111|consen  144 PTSNKSLLAFPGFKTGQVQIVDLASTKPNAPSIINAHDSDIACVALNL-QGTLVATASTKGTLIRIFDTEDGTLLQELRR  222 (346)
T ss_pred             CCCCceEEEcCCCccceEEEEEhhhcCcCCceEEEcccCceeEEEEcC-CccEEEEeccCcEEEEEEEcCCCcEeeeeec
Confidence            2223334443 55779999999976655  467789999999999986 7789999999988 69999999999888763


Q ss_pred             --ccccEEEEEEcCCCCeEEEEeCCCcEEEEecCccceehc-----------cc-------------ccccceEEEEEee
Q 021247          242 --HASWVLSVDASPDGAAITTGSSDRTVKLWDLNMRAAMQS-----------MT-------------NHTDQVWGVSFRP  295 (315)
Q Consensus       242 --~~~~i~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~-----------~~-------------~~~~~v~~~~~s~  295 (315)
                        ....|.+++|||+..+|++++..|++.||.++.......           +.             -..+..--++|-.
T Consensus       223 G~d~A~iy~iaFSp~~s~LavsSdKgTlHiF~l~~~~~~~~~~SSl~~~~~~lpky~~S~wS~~~f~l~~~~~~~~~fg~  302 (346)
T KOG2111|consen  223 GVDRADIYCIAFSPNSSWLAVSSDKGTLHIFSLRDTENTEDESSSLSFKRLVLPKYFSSEWSFAKFQLPQGTQCIIAFGS  302 (346)
T ss_pred             CCchheEEEEEeCCCccEEEEEcCCCeEEEEEeecCCCCccccccccccccccchhcccceeEEEEEccCCCcEEEEecC
Confidence              345699999999999999999999999998864221111           11             1122333456666


Q ss_pred             CCCEEEEEeCCCcEEEeec
Q 021247          296 LGGRVVSVSDDKSISLYEY  314 (315)
Q Consensus       296 ~~~~l~s~~~d~~i~i~~~  314 (315)
                      +.+.++..+.||+.+-+.+
T Consensus       303 ~~nsvi~i~~Dgsy~k~~f  321 (346)
T KOG2111|consen  303 ETNTVIAICADGSYYKFKF  321 (346)
T ss_pred             CCCeEEEEEeCCcEEEEEe
Confidence            6567888888888765554

>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]

Probab=99.71  E-value=5.9e-15  Score=115.29  Aligned_cols=232  Identities=21%  Similarity=0.234  Sum_probs=171.1

Q ss_pred             cceEEEEeCCCCCEEEEeeCCCeEEEEECCCCc---eeEEeeCCcccEEEEEECCCCCeEEEEecCCCeEEEEec-CCcc
Q 021247           61 LGVVSVAAHPSGIIAASASLDSFVRVFDVDTNA---SIATLEASPSEVWQMQFDPKGTTLAVAGGGSASVKLWDT-ATWN  136 (315)
Q Consensus        61 ~~v~~~~~~~~g~~l~s~~~d~~i~~w~~~~~~---~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~~d~-~~~~  136 (315)
                      .+|++.+|++++..++.+-....|.|+.....+   ...++..|...|..++|.|..+.+ ++|+.|..-++|.. ..++
T Consensus        11 ~pitchAwn~drt~iAv~~~~~evhiy~~~~~~~w~~~htls~Hd~~vtgvdWap~snrI-vtcs~drnayVw~~~~~~~   89 (361)
T KOG1523|consen   11 EPITCHAWNSDRTQIAVSPNNHEVHIYSMLGADLWEPAHTLSEHDKIVTGVDWAPKSNRI-VTCSHDRNAYVWTQPSGGT   89 (361)
T ss_pred             CceeeeeecCCCceEEeccCCceEEEEEecCCCCceeceehhhhCcceeEEeecCCCCce-eEccCCCCccccccCCCCe
Confidence            589999999999999999999999999987765   456788899999999999998866 78999999999987 3333


Q ss_pred             eeeeecCCCCCCCCCCccCCCCcceEEEEECCCCCEEEEecCCCcEEEEEcccceee--e--eecCCccceEEEEEcCCC
Q 021247          137 LIATLSIPRPEGLKPTDKSSSKKFVLSVAWSPDGRRIACGSMDGTISVFDVTRAKFL--H--HLEGHFMPVRSLVYSPVD  212 (315)
Q Consensus       137 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~s~dg~i~i~d~~~~~~~--~--~~~~~~~~v~~~~~~~~~  212 (315)
                      ...++.+           ..++...+++.|+|.++.|++|+....|.+|=++...-.  .  .-+.+...|.+++|+| +
T Consensus        90 WkptlvL-----------lRiNrAAt~V~WsP~enkFAVgSgar~isVcy~E~ENdWWVsKhikkPirStv~sldWhp-n  157 (361)
T KOG1523|consen   90 WKPTLVL-----------LRINRAATCVKWSPKENKFAVGSGARLISVCYYEQENDWWVSKHIKKPIRSTVTSLDWHP-N  157 (361)
T ss_pred             eccceeE-----------EEeccceeeEeecCcCceEEeccCccEEEEEEEecccceehhhhhCCccccceeeeeccC-C
Confidence            3322221           122344789999999999999999999998877544321  1  1123567789999999 5


Q ss_pred             CcEEEEEeCCCeEEEEeCC-----C-------------CeeEEEeecccccEEEEEEcCCCCeEEEEeCCCcEEEEecCc
Q 021247          213 PRVLFSASDDTHVHMYDAE-----G-------------KSLVTAMSGHASWVLSVDASPDGAAITTGSSDRTVKLWDLNM  274 (315)
Q Consensus       213 ~~~l~s~~~d~~i~~wd~~-----~-------------~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~d~~i~iwd~~~  274 (315)
                      .-+|++|+.|++.++|..-     .             ++++.++....+++..+.|+|+|..|+=.+.|..|.+=|...
T Consensus       158 nVLlaaGs~D~k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~~~~ggwvh~v~fs~sG~~lawv~Hds~v~~~da~~  237 (361)
T KOG1523|consen  158 NVLLAAGSTDGKCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEASSSGGWVHGVLFSPSGNRLAWVGHDSTVSFVDAAG  237 (361)
T ss_pred             cceecccccCcceeEEEEeeeccccCCCCCCCccCCcHHHHHHhhccCCCceeeeEeCCCCCEeeEecCCCceEEeecCC
Confidence            6688899999999998631     1             233444545678999999999999999999999999998765


Q ss_pred             cc-eehcccccccceEEEEEeeCCCEEEEEeCC
Q 021247          275 RA-AMQSMTNHTDQVWGVSFRPLGGRVVSVSDD  306 (315)
Q Consensus       275 ~~-~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d  306 (315)
                      .. .........-+..++.|-.. +.++.++.|
T Consensus       238 p~~~v~~~~~~~lP~ls~~~ise-~~vv~ag~~  269 (361)
T KOG1523|consen  238 PSERVQSVATAQLPLLSVSWISE-NSVVAAGYD  269 (361)
T ss_pred             CchhccchhhccCCceeeEeecC-CceeecCCC
Confidence            43 23333222255666666543 234444444

>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=99.70  E-value=3.6e-17  Score=133.41  Aligned_cols=191  Identities=21%  Similarity=0.328  Sum_probs=162.5

Q ss_pred             EEEEEECCCCCeEEEEecCCCeEEEEecCCcceeeeecCCCCCCCCCCccCCCCcceEEEEECCCCCEEEEecCCCcEEE
Q 021247          105 VWQMQFDPKGTTLAVAGGGSASVKLWDTATWNLIATLSIPRPEGLKPTDKSSSKKFVLSVAWSPDGRRIACGSMDGTISV  184 (315)
Q Consensus       105 v~~~~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~s~dg~i~i  184 (315)
                      -..+.+..+|.+++ .|+.-|.+..+|..++++...+...+.              |..+.|-.+.++||++ ....+++
T Consensus       132 PY~~~ytrnGrhll-lgGrKGHlAa~Dw~t~~L~~Ei~v~Et--------------v~Dv~~LHneq~~AVA-QK~y~yv  195 (545)
T KOG1272|consen  132 PYHLDYTRNGRHLL-LGGRKGHLAAFDWVTKKLHFEINVMET--------------VRDVTFLHNEQFFAVA-QKKYVYV  195 (545)
T ss_pred             CeeeeecCCccEEE-ecCCccceeeeecccceeeeeeehhhh--------------hhhhhhhcchHHHHhh-hhceEEE
Confidence            35678888898875 467889999999999998887765432              6677787666666665 6678999


Q ss_pred             EEcccceeeeeecCCccceEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCeeEEEeecccccEEEEEEcCCCCeEEEEeCC
Q 021247          185 FDVTRAKFLHHLEGHFMPVRSLVYSPVDPRVLFSASDDTHVHMYDAEGKSLVTAMSGHASWVLSVDASPDGAAITTGSSD  264 (315)
Q Consensus       185 ~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~d  264 (315)
                      ||- .|..+..++.| ..|..+.|-| ...+|++++..|.++--|...++++..+....+.+..+.-+|-+..+-+|..+
T Consensus       196 YD~-~GtElHClk~~-~~v~rLeFLP-yHfLL~~~~~~G~L~Y~DVS~GklVa~~~t~~G~~~vm~qNP~NaVih~Ghsn  272 (545)
T KOG1272|consen  196 YDN-NGTELHCLKRH-IRVARLEFLP-YHFLLVAASEAGFLKYQDVSTGKLVASIRTGAGRTDVMKQNPYNAVIHLGHSN  272 (545)
T ss_pred             ecC-CCcEEeehhhc-Cchhhhcccc-hhheeeecccCCceEEEeechhhhhHHHHccCCccchhhcCCccceEEEcCCC
Confidence            994 45666666544 4778899998 45688899999999999999999998888788888889999999999999999


Q ss_pred             CcEEEEecCccceehcccccccceEEEEEeeCCCEEEEEeCCCcEEEeec
Q 021247          265 RTVKLWDLNMRAAMQSMTNHTDQVWGVSFRPLGGRVVSVSDDKSISLYEY  314 (315)
Q Consensus       265 ~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~i~i~~~  314 (315)
                      |+|.+|.-++.+++..+..|.++|.++++.++|+|++|.|.|..++|||+
T Consensus       273 GtVSlWSP~skePLvKiLcH~g~V~siAv~~~G~YMaTtG~Dr~~kIWDl  322 (545)
T KOG1272|consen  273 GTVSLWSPNSKEPLVKILCHRGPVSSIAVDRGGRYMATTGLDRKVKIWDL  322 (545)
T ss_pred             ceEEecCCCCcchHHHHHhcCCCcceEEECCCCcEEeecccccceeEeee
Confidence            99999999999999888999999999999999999999999999999996

>PRK04922 tolB translocation protein TolB; Provisional

Probab=99.70  E-value=1.2e-14  Score=126.48  Aligned_cols=236  Identities=17%  Similarity=0.171  Sum_probs=151.2

Q ss_pred             CcEEEEcCCCCcceeeccccccceEEEEeCCCCCEEEEeeCC---CeEEEEECCCCceeEEeeCCcccEEEEEECCCCCe
Q 021247           40 ETVKLWRPDDMQLERTNTGHCLGVVSVAAHPSGIIAASASLD---SFVRVFDVDTNASIATLEASPSEVWQMQFDPKGTT  116 (315)
Q Consensus        40 ~~v~~w~~~~~~~~~~~~~h~~~v~~~~~~~~g~~l~s~~~d---~~i~~w~~~~~~~~~~~~~~~~~v~~~~~~~~~~~  116 (315)
                      ..|.+||.+... .+.+..+...+.+..|+|+|+.++..+.+   ..|++||+.+++... +..........+|+|+|+.
T Consensus       184 ~~l~i~D~~g~~-~~~lt~~~~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~~~-l~~~~g~~~~~~~SpDG~~  261 (433)
T PRK04922        184 YALQVADSDGYN-PQTILRSAEPILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQREL-VASFRGINGAPSFSPDGRR  261 (433)
T ss_pred             EEEEEECCCCCC-ceEeecCCCccccccCCCCCCEEEEEecCCCCcEEEEEECCCCCEEE-eccCCCCccCceECCCCCE
Confidence            358889876443 34444566788999999999988877643   469999998876533 2233444557899999998


Q ss_pred             EEEEecCCC--eEEEEecCCcceeeeecCCCCCCCCCCccCCCCcceEEEEECCCCCEEEEecC-CCc--EEEEEcccce
Q 021247          117 LAVAGGGSA--SVKLWDTATWNLIATLSIPRPEGLKPTDKSSSKKFVLSVAWSPDGRRIACGSM-DGT--ISVFDVTRAK  191 (315)
Q Consensus       117 ~~~~~~~d~--~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~s~-dg~--i~i~d~~~~~  191 (315)
                      ++++.+.++  .|.+||+.+++... +.             .+.......+|+|+|++|+..+. +|.  |+++|+.+++
T Consensus       262 l~~~~s~~g~~~Iy~~d~~~g~~~~-lt-------------~~~~~~~~~~~spDG~~l~f~sd~~g~~~iy~~dl~~g~  327 (433)
T PRK04922        262 LALTLSRDGNPEIYVMDLGSRQLTR-LT-------------NHFGIDTEPTWAPDGKSIYFTSDRGGRPQIYRVAASGGS  327 (433)
T ss_pred             EEEEEeCCCCceEEEEECCCCCeEE-Cc-------------cCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCC
Confidence            877655544  69999998765432 11             01112346799999998887653 444  7777776655


Q ss_pred             eeeeecCCccceEEEEEcCCCCcEEEEEeCC--CeEEEEeCCCCeeEEEeecccccEEEEEEcCCCCeEEEEeCC---Cc
Q 021247          192 FLHHLEGHFMPVRSLVYSPVDPRVLFSASDD--THVHMYDAEGKSLVTAMSGHASWVLSVDASPDGAAITTGSSD---RT  266 (315)
Q Consensus       192 ~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d--~~i~~wd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~d---~~  266 (315)
                      ... +..+........|+|++..++++...+  ..|.+||+.+++.. .+. +........|+|+|+.++..+.+   +.
T Consensus       328 ~~~-lt~~g~~~~~~~~SpDG~~Ia~~~~~~~~~~I~v~d~~~g~~~-~Lt-~~~~~~~p~~spdG~~i~~~s~~~g~~~  404 (433)
T PRK04922        328 AER-LTFQGNYNARASVSPDGKKIAMVHGSGGQYRIAVMDLSTGSVR-TLT-PGSLDESPSFAPNGSMVLYATREGGRGV  404 (433)
T ss_pred             eEE-eecCCCCccCEEECCCCCEEEEEECCCCceeEEEEECCCCCeE-ECC-CCCCCCCceECCCCCEEEEEEecCCceE
Confidence            322 222222344679999544444443333  36999999877654 332 22234567899999987666553   35


Q ss_pred             EEEEecCccceehcccccccceEEEEEee
Q 021247          267 VKLWDLNMRAAMQSMTNHTDQVWGVSFRP  295 (315)
Q Consensus       267 i~iwd~~~~~~~~~~~~~~~~v~~~~~s~  295 (315)
                      +.++++.. .....+..+.+.+...+|+|
T Consensus       405 L~~~~~~g-~~~~~l~~~~g~~~~p~wsp  432 (433)
T PRK04922        405 LAAVSTDG-RVRQRLVSADGEVREPAWSP  432 (433)
T ss_pred             EEEEECCC-CceEEcccCCCCCCCCccCC
Confidence            77778754 33444444556677778876

>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]

Probab=99.70  E-value=3.8e-17  Score=141.94  Aligned_cols=238  Identities=18%  Similarity=0.302  Sum_probs=180.3

Q ss_pred             ceeeccccccceEEEEeCCCCCEEEEeeCCCeEEEEECCCCceeEEeeCCcccEEEEEECCCCCeEEEEecCCCeEEEEe
Q 021247           52 LERTNTGHCLGVVSVAAHPSGIIAASASLDSFVRVFDVDTNASIATLEASPSEVWQMQFDPKGTTLAVAGGGSASVKLWD  131 (315)
Q Consensus        52 ~~~~~~~h~~~v~~~~~~~~g~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~~d  131 (315)
                      ..+.+.+|..+|.|..|...|.++++|+.|..++||..++..+.....+|.+.+..++.+-. +.++++++.|..|++|.
T Consensus       182 ~ikrLlgH~naVyca~fDrtg~~Iitgsdd~lvKiwS~et~~~lAs~rGhs~ditdlavs~~-n~~iaaaS~D~vIrvWr  260 (1113)
T KOG0644|consen  182 NIKRLLGHRNAVYCAIFDRTGRYIITGSDDRLVKIWSMETARCLASCRGHSGDITDLAVSSN-NTMIAAASNDKVIRVWR  260 (1113)
T ss_pred             HHHHHHhhhhheeeeeeccccceEeecCccceeeeeeccchhhhccCCCCccccchhccchh-hhhhhhcccCceEEEEe
Confidence            34556789999999999999999999999999999999999999999999999999998755 44567888999999999


Q ss_pred             cCCcceeeeecCCCCCCCCCCccCCCCcceEEEEECCCCCEEEEecCCCcEEEEEcccceeeee---ec-CCccceEEEE
Q 021247          132 TATWNLIATLSIPRPEGLKPTDKSSSKKFVLSVAWSPDGRRIACGSMDGTISVFDVTRAKFLHH---LE-GHFMPVRSLV  207 (315)
Q Consensus       132 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~s~dg~i~i~d~~~~~~~~~---~~-~~~~~v~~~~  207 (315)
                      +..+.++..+             .+|...|++++|+|--    +.+.||++++||.+-.-.+..   .. .....+.++.
T Consensus       261 l~~~~pvsvL-------------rghtgavtaiafsP~~----sss~dgt~~~wd~r~~~~~y~prp~~~~~~~~~~s~~  323 (1113)
T KOG0644|consen  261 LPDGAPVSVL-------------RGHTGAVTAIAFSPRA----SSSDDGTCRIWDARLEPRIYVPRPLKFTEKDLVDSIL  323 (1113)
T ss_pred             cCCCchHHHH-------------hccccceeeeccCccc----cCCCCCceEeccccccccccCCCCCCcccccceeeee
Confidence            9877666544             3466679999999943    778999999999861111111   00 1123445555


Q ss_pred             EcCCCCcEEEEEeCCCeEEEEeCCCCeeEEEeecccccEEEEEEc-CCCCeEEEEeCCCcEEEEecCccceehccccccc
Q 021247          208 YSPVDPRVLFSASDDTHVHMYDAEGKSLVTAMSGHASWVLSVDAS-PDGAAITTGSSDRTVKLWDLNMRAAMQSMTNHTD  286 (315)
Q Consensus       208 ~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~i~~~~~~-~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~  286 (315)
                      |.. ....+++++.|+.-..|......      .+.....-+..+ .-..+.+++-.+..+.+|++..+..++.+.+|.+
T Consensus       324 ~~~-~~~~f~Tgs~d~ea~n~e~~~l~------~~~~~lif~t~ssd~~~~~~~ar~~~~~~vwnl~~g~l~H~l~ghsd  396 (1113)
T KOG0644|consen  324 FEN-NGDRFLTGSRDGEARNHEFEQLA------WRSNLLIFVTRSSDLSSIVVTARNDHRLCVWNLYTGQLLHNLMGHSD  396 (1113)
T ss_pred             ccc-cccccccccCCcccccchhhHhh------hhccceEEEeccccccccceeeeeeeEeeeeecccchhhhhhccccc
Confidence            554 55678899999887777653211      111111111111 1125677788888899999999999999999999


Q ss_pred             ceEEEEEeeCCCEE-EEEeCCCcEEEeec
Q 021247          287 QVWGVSFRPLGGRV-VSVSDDKSISLYEY  314 (315)
Q Consensus       287 ~v~~~~~s~~~~~l-~s~~~d~~i~i~~~  314 (315)
                      .+..+.++|.+..+ .+++.||.+.|||.
T Consensus       397 ~~yvLd~Hpfn~ri~msag~dgst~iwdi  425 (1113)
T KOG0644|consen  397 EVYVLDVHPFNPRIAMSAGYDGSTIIWDI  425 (1113)
T ss_pred             ceeeeeecCCCcHhhhhccCCCceEeeec
Confidence            99999999998877 59999999999985

>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins

Probab=99.69  E-value=4.9e-15  Score=113.99  Aligned_cols=149  Identities=16%  Similarity=0.358  Sum_probs=106.2

Q ss_pred             EEEEECCCCCEEEEecC----------CCcEEEEEcc-cceeeeeecC-CccceEEEEEcCCCCcEEEE-EeCCCeEEEE
Q 021247          162 LSVAWSPDGRRIACGSM----------DGTISVFDVT-RAKFLHHLEG-HFMPVRSLVYSPVDPRVLFS-ASDDTHVHMY  228 (315)
Q Consensus       162 ~~~~~~~~~~~l~~~s~----------dg~i~i~d~~-~~~~~~~~~~-~~~~v~~~~~~~~~~~~l~s-~~~d~~i~~w  228 (315)
                      ..+.|+|+|++|++-..          -+...+|-++ .+.....+.. ...+|.+++|+|.+.++++. |..+..+.+|
T Consensus         9 ~~~~W~~~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~~~~~~i~l~~~~~I~~~~WsP~g~~favi~g~~~~~v~ly   88 (194)
T PF08662_consen    9 AKLHWQPSGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKNIPVESIELKKEGPIHDVAWSPNGNEFAVIYGSMPAKVTLY   88 (194)
T ss_pred             EEEEecccCCEEEEEEEEeeccCcceEEeeEEEEEEecCCCccceeeccCCCceEEEEECcCCCEEEEEEccCCcccEEE
Confidence            36889999987765332          1234555542 2233444433 34579999999966555443 4467899999


Q ss_pred             eCCCCeeEEEeecccccEEEEEEcCCCCeEEEEeCC---CcEEEEecCccceehcccccccceEEEEEeeCCCEEEEEeC
Q 021247          229 DAEGKSLVTAMSGHASWVLSVDASPDGAAITTGSSD---RTVKLWDLNMRAAMQSMTNHTDQVWGVSFRPLGGRVVSVSD  305 (315)
Q Consensus       229 d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~d---~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~  305 (315)
                      |.+ .+.+..+.  ...++.+.|+|+|++|++++.+   |.|.+||.+..+.+.+.. | ..++.++|||+|++|+++..
T Consensus        89 d~~-~~~i~~~~--~~~~n~i~wsP~G~~l~~~g~~n~~G~l~~wd~~~~~~i~~~~-~-~~~t~~~WsPdGr~~~ta~t  163 (194)
T PF08662_consen   89 DVK-GKKIFSFG--TQPRNTISWSPDGRFLVLAGFGNLNGDLEFWDVRKKKKISTFE-H-SDATDVEWSPDGRYLATATT  163 (194)
T ss_pred             cCc-ccEeEeec--CCCceEEEECCCCCEEEEEEccCCCcEEEEEECCCCEEeeccc-c-CcEEEEEEcCCCCEEEEEEe
Confidence            997 33444443  4567889999999999998754   569999999888777654 3 35789999999999987764


Q ss_pred             ------CCcEEEeecC
Q 021247          306 ------DKSISLYEYS  315 (315)
Q Consensus       306 ------d~~i~i~~~~  315 (315)
                            |..++||++.
T Consensus       164 ~~r~~~dng~~Iw~~~  179 (194)
T PF08662_consen  164 SPRLRVDNGFKIWSFQ  179 (194)
T ss_pred             ccceeccccEEEEEec
Confidence                  7899999873

>PRK05137 tolB translocation protein TolB; Provisional

Probab=99.68  E-value=9.7e-14  Score=121.06  Aligned_cols=236  Identities=17%  Similarity=0.193  Sum_probs=151.6

Q ss_pred             CcEEEEcCCCCcceeeccccccceEEEEeCCCCCEEEEeeC---CCeEEEEECCCCceeEEeeCCcccEEEEEECCCCCe
Q 021247           40 ETVKLWRPDDMQLERTNTGHCLGVVSVAAHPSGIIAASASL---DSFVRVFDVDTNASIATLEASPSEVWQMQFDPKGTT  116 (315)
Q Consensus        40 ~~v~~w~~~~~~~~~~~~~h~~~v~~~~~~~~g~~l~s~~~---d~~i~~w~~~~~~~~~~~~~~~~~v~~~~~~~~~~~  116 (315)
                      ..|.++|.+.... +.+..|...+.+..|+|+|+.|+..+.   +..|++||+.+++.. .+......+...+|+|+|+.
T Consensus       182 ~~l~~~d~dg~~~-~~lt~~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~~-~l~~~~g~~~~~~~SPDG~~  259 (435)
T PRK05137        182 KRLAIMDQDGANV-RYLTDGSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQRE-LVGNFPGMTFAPRFSPDGRK  259 (435)
T ss_pred             eEEEEECCCCCCc-EEEecCCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcEE-EeecCCCcccCcEECCCCCE
Confidence            3678888755433 445567778999999999998887653   468999999887653 34445566778899999998


Q ss_pred             EEEEecCCCe--EEEEecCCcceeeeecCCCCCCCCCCccCCCCcceEEEEECCCCCEEEEecC-CC--cEEEEEcccce
Q 021247          117 LAVAGGGSAS--VKLWDTATWNLIATLSIPRPEGLKPTDKSSSKKFVLSVAWSPDGRRIACGSM-DG--TISVFDVTRAK  191 (315)
Q Consensus       117 ~~~~~~~d~~--i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~s~-dg--~i~i~d~~~~~  191 (315)
                      ++++...++.  |.+||+.+++... +.             .+........|+|||+.|+..+. +|  .|+++|+..+.
T Consensus       260 la~~~~~~g~~~Iy~~d~~~~~~~~-Lt-------------~~~~~~~~~~~spDG~~i~f~s~~~g~~~Iy~~d~~g~~  325 (435)
T PRK05137        260 VVMSLSQGGNTDIYTMDLRSGTTTR-LT-------------DSPAIDTSPSYSPDGSQIVFESDRSGSPQLYVMNADGSN  325 (435)
T ss_pred             EEEEEecCCCceEEEEECCCCceEE-cc-------------CCCCccCceeEcCCCCEEEEEECCCCCCeEEEEECCCCC
Confidence            8777665554  7777887654432 11             01122456899999998876653 33  58888887654


Q ss_pred             eeeeecCCccceEEEEEcCCCCcEEEEEeCC--CeEEEEeCCCCeeEEEeecccccEEEEEEcCCCCeEEEEeCC-----
Q 021247          192 FLHHLEGHFMPVRSLVYSPVDPRVLFSASDD--THVHMYDAEGKSLVTAMSGHASWVLSVDASPDGAAITTGSSD-----  264 (315)
Q Consensus       192 ~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d--~~i~~wd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~d-----  264 (315)
                      .. .+..+...+....|+|++..++++....  ..|.+||..++... .+.. ...+....|+|+|+.|+..+.+     
T Consensus       326 ~~-~lt~~~~~~~~~~~SpdG~~ia~~~~~~~~~~i~~~d~~~~~~~-~lt~-~~~~~~p~~spDG~~i~~~~~~~~~~~  402 (435)
T PRK05137        326 PR-RISFGGGRYSTPVWSPRGDLIAFTKQGGGQFSIGVMKPDGSGER-ILTS-GFLVEGPTWAPNGRVIMFFRQTPGSGG  402 (435)
T ss_pred             eE-EeecCCCcccCeEECCCCCEEEEEEcCCCceEEEEEECCCCceE-eccC-CCCCCCCeECCCCCEEEEEEccCCCCC
Confidence            33 3333334456678999554444443322  46888998665432 2221 2235678999999987665443     


Q ss_pred             -CcEEEEecCccceehcccccccceEEEEEeeC
Q 021247          265 -RTVKLWDLNMRAAMQSMTNHTDQVWGVSFRPL  296 (315)
Q Consensus       265 -~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~  296 (315)
                       ..+.+.|+..+.. ..+.. ...+...+|+|.
T Consensus       403 ~~~L~~~dl~g~~~-~~l~~-~~~~~~p~Wsp~  433 (435)
T PRK05137        403 APKLYTVDLTGRNE-REVPT-PGDASDPAWSPL  433 (435)
T ss_pred             cceEEEEECCCCce-EEccC-CCCccCcccCCC
Confidence             2577778765443 23332 334566677763

>PRK02889 tolB translocation protein TolB; Provisional

Probab=99.68  E-value=4.1e-14  Score=122.89  Aligned_cols=236  Identities=18%  Similarity=0.174  Sum_probs=145.2

Q ss_pred             CcEEEEcCCCCcceeeccccccceEEEEeCCCCCEEEEeeCC---CeEEEEECCCCceeEEeeCCcccEEEEEECCCCCe
Q 021247           40 ETVKLWRPDDMQLERTNTGHCLGVVSVAAHPSGIIAASASLD---SFVRVFDVDTNASIATLEASPSEVWQMQFDPKGTT  116 (315)
Q Consensus        40 ~~v~~w~~~~~~~~~~~~~h~~~v~~~~~~~~g~~l~s~~~d---~~i~~w~~~~~~~~~~~~~~~~~v~~~~~~~~~~~  116 (315)
                      ..|.++|.+.. ..+.+..+...+.+..|+|+|+.++..+.+   ..|++||+.+++... +......+...+|+|+++.
T Consensus       176 ~~L~~~D~dG~-~~~~l~~~~~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~~-l~~~~g~~~~~~~SPDG~~  253 (427)
T PRK02889        176 YQLQISDADGQ-NAQSALSSPEPIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGRRRV-VANFKGSNSAPAWSPDGRT  253 (427)
T ss_pred             cEEEEECCCCC-CceEeccCCCCcccceEcCCCCEEEEEEccCCCcEEEEEECCCCCEEE-eecCCCCccceEECCCCCE
Confidence            45666776433 333444566788999999999988866543   459999998886543 3333445668899999998


Q ss_pred             EEEEecCCCeEEEEe--cCCcceeeeecCCCCCCCCCCccCCCCcceEEEEECCCCCEEEEecC-CCcEEEEE--cccce
Q 021247          117 LAVAGGGSASVKLWD--TATWNLIATLSIPRPEGLKPTDKSSSKKFVLSVAWSPDGRRIACGSM-DGTISVFD--VTRAK  191 (315)
Q Consensus       117 ~~~~~~~d~~i~~~d--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~s~-dg~i~i~d--~~~~~  191 (315)
                      ++++...++...+|.  +..++ ...+.             .+........|+|||+.|+..+. ++...+|.  +.++.
T Consensus       254 la~~~~~~g~~~Iy~~d~~~~~-~~~lt-------------~~~~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~~g~  319 (427)
T PRK02889        254 LAVALSRDGNSQIYTVNADGSG-LRRLT-------------QSSGIDTEPFFSPDGRSIYFTSDRGGAPQIYRMPASGGA  319 (427)
T ss_pred             EEEEEccCCCceEEEEECCCCC-cEECC-------------CCCCCCcCeEEcCCCCEEEEEecCCCCcEEEEEECCCCc
Confidence            887777777766665  43322 11111             11122456789999998876553 45555554  44443


Q ss_pred             eeeeecCCccceEEEEEcCCCCcEEEEEeCCC---eEEEEeCCCCeeEEEeecccccEEEEEEcCCCCeEEEEeCCC-c-
Q 021247          192 FLHHLEGHFMPVRSLVYSPVDPRVLFSASDDT---HVHMYDAEGKSLVTAMSGHASWVLSVDASPDGAAITTGSSDR-T-  266 (315)
Q Consensus       192 ~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~---~i~~wd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~d~-~-  266 (315)
                      .. .+..+........|+| +++.++..+.++   .|.+||+.++.... +... .......|+|+|+.|+.++.++ . 
T Consensus       320 ~~-~lt~~g~~~~~~~~Sp-DG~~Ia~~s~~~g~~~I~v~d~~~g~~~~-lt~~-~~~~~p~~spdg~~l~~~~~~~g~~  395 (427)
T PRK02889        320 AQ-RVTFTGSYNTSPRISP-DGKLLAYISRVGGAFKLYVQDLATGQVTA-LTDT-TRDESPSFAPNGRYILYATQQGGRS  395 (427)
T ss_pred             eE-EEecCCCCcCceEECC-CCCEEEEEEccCCcEEEEEEECCCCCeEE-ccCC-CCccCceECCCCCEEEEEEecCCCE
Confidence            22 2221222234578999 455665554433   69999998775443 2222 2345789999999887766544 2 


Q ss_pred             -EEEEecCccceehcccccccceEEEEEeeC
Q 021247          267 -VKLWDLNMRAAMQSMTNHTDQVWGVSFRPL  296 (315)
Q Consensus       267 -i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~  296 (315)
                       +.+.++. ++....+..+.+.+...+|+|-
T Consensus       396 ~l~~~~~~-g~~~~~l~~~~g~~~~p~wsp~  425 (427)
T PRK02889        396 VLAAVSSD-GRIKQRLSVQGGDVREPSWGPF  425 (427)
T ss_pred             EEEEEECC-CCceEEeecCCCCCCCCccCCC
Confidence             4444553 4444445555567777788874

>KOG2321 consensus WD40 repeat protein [General function prediction only]

Probab=99.67  E-value=4e-14  Score=118.79  Aligned_cols=279  Identities=15%  Similarity=0.178  Sum_probs=191.1

Q ss_pred             hccccceEEEEEeecCCCCCcEEEEeeCCCcEEEEcCCCCcceeeccccccceEEEEeCCCCCEEEEeeCCCeEEEEECC
Q 021247           11 NAHEESVWAVTWVPATETRPALLLTGSLDETVKLWRPDDMQLERTNTGHCLGVVSVAAHPSGIIAASASLDSFVRVFDVD   90 (315)
Q Consensus        11 ~~h~~~v~~v~~~~~~~~~~~~l~sgs~d~~v~~w~~~~~~~~~~~~~h~~~v~~~~~~~~g~~l~s~~~d~~i~~w~~~   90 (315)
                      ..|....+.+.-+|++..   +++||-.--.|++||+.+..+.....-....|.-.-.+.|=..++---.|++|.+-.. 
T Consensus        48 fe~p~ast~ik~s~DGqY---~lAtG~YKP~ikvydlanLSLKFERhlDae~V~feiLsDD~SK~v~L~~DR~IefHak-  123 (703)
T KOG2321|consen   48 FEMPTASTRIKVSPDGQY---LLATGTYKPQIKVYDLANLSLKFERHLDAEVVDFEILSDDYSKSVFLQNDRTIEFHAK-  123 (703)
T ss_pred             cCCccccceeEecCCCcE---EEEecccCCceEEEEcccceeeeeecccccceeEEEeccchhhheEeecCceeeehhh-
Confidence            378889999999999876   7899999999999999876543222112234555555555555555566777754221 


Q ss_pred             CCceeEEeeCCcccEEEEEECCCCCeEEEEecCCCeEEEEecCCcceeeeecCCCCCCCCCCccCCCCcceEEEEECCCC
Q 021247           91 TNASIATLEASPSEVWQMQFDPKGTTLAVAGGGSASVKLWDTATWNLIATLSIPRPEGLKPTDKSSSKKFVLSVAWSPDG  170 (315)
Q Consensus        91 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~  170 (315)
                      .|.-.. +. -+.....++++.-.-.++++|+ ...|.-.++..+..+..+....             ..++++..++..
T Consensus       124 ~G~hy~-~R-IP~~GRDm~y~~~scDly~~gs-g~evYRlNLEqGrfL~P~~~~~-------------~~lN~v~in~~h  187 (703)
T KOG2321|consen  124 YGRHYR-TR-IPKFGRDMKYHKPSCDLYLVGS-GSEVYRLNLEQGRFLNPFETDS-------------GELNVVSINEEH  187 (703)
T ss_pred             cCeeee-ee-cCcCCccccccCCCccEEEeec-CcceEEEEcccccccccccccc-------------ccceeeeecCcc
Confidence            121111 11 1233445666644444544443 4567777787777665553322             238899999999


Q ss_pred             CEEEEecCCCcEEEEEcccceeeeeec------CCc-----cceEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCeeEEE-
Q 021247          171 RRIACGSMDGTISVFDVTRAKFLHHLE------GHF-----MPVRSLVYSPVDPRVLFSASDDTHVHMYDAEGKSLVTA-  238 (315)
Q Consensus       171 ~~l~~~s~dg~i~i~d~~~~~~~~~~~------~~~-----~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~-  238 (315)
                      .+|++|+.+|.|-.||.+.......+.      .|.     ..|++++|+. ++-.++.|..+|.+.+||++..+.+.. 
T Consensus       188 gLla~Gt~~g~VEfwDpR~ksrv~~l~~~~~v~s~pg~~~~~svTal~F~d-~gL~~aVGts~G~v~iyDLRa~~pl~~k  266 (703)
T KOG2321|consen  188 GLLACGTEDGVVEFWDPRDKSRVGTLDAASSVNSHPGGDAAPSVTALKFRD-DGLHVAVGTSTGSVLIYDLRASKPLLVK  266 (703)
T ss_pred             ceEEecccCceEEEecchhhhhheeeecccccCCCccccccCcceEEEecC-CceeEEeeccCCcEEEEEcccCCceeec
Confidence            999999999999999998765544432      222     2489999985 577899999999999999998765432 


Q ss_pred             eecccccEEEEEEcCC--CCeEEEEeCCCcEEEEecCccceehcccccccceEEEEEeeCCCEEEEEeCCCcEEEe
Q 021247          239 MSGHASWVLSVDASPD--GAAITTGSSDRTVKLWDLNMRAAMQSMTNHTDQVWGVSFRPLGGRVVSVSDDKSISLY  312 (315)
Q Consensus       239 ~~~~~~~i~~~~~~~~--~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~i~i~  312 (315)
                      -.+-.-+|..+.|.+.  +..|+| .....++|||-.+++....+..- ..++.+++-|++.+++++-++..+..|
T Consensus       267 dh~~e~pi~~l~~~~~~~q~~v~S-~Dk~~~kiWd~~~Gk~~asiEpt-~~lND~C~~p~sGm~f~Ane~~~m~~y  340 (703)
T KOG2321|consen  267 DHGYELPIKKLDWQDTDQQNKVVS-MDKRILKIWDECTGKPMASIEPT-SDLNDFCFVPGSGMFFTANESSKMHTY  340 (703)
T ss_pred             ccCCccceeeecccccCCCceEEe-cchHHhhhcccccCCceeecccc-CCcCceeeecCCceEEEecCCCcceeE
Confidence            2233567889999775  334444 34567999999999988776543 458899999999999999888776654

>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]

Probab=99.67  E-value=1.4e-15  Score=126.41  Aligned_cols=200  Identities=22%  Similarity=0.272  Sum_probs=141.7

Q ss_pred             EeCCCCCEEEEeeCCCeEEEEECCCCceeEEe----eCCcccEEEEEECCCCCeEEEEecCCCeEEEEecCCcceeeeec
Q 021247           67 AAHPSGIIAASASLDSFVRVFDVDTNASIATL----EASPSEVWQMQFDPKGTTLAVAGGGSASVKLWDTATWNLIATLS  142 (315)
Q Consensus        67 ~~~~~g~~l~s~~~d~~i~~w~~~~~~~~~~~----~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~  142 (315)
                      .-.+.+.-++.+-.-|.+.+.|....+....+    ......|.++.|-|.+..++++.-.+|.+.+||..-   .....
T Consensus       180 ~a~~~g~dllIGf~tGqvq~idp~~~~~sklfne~r~i~ktsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~---~~~~t  256 (636)
T KOG2394|consen  180 TATPKGLDLLIGFTTGQVQLIDPINFEVSKLFNEERLINKSSVTCIKWVPGSDSLFLVAHASGNLYLYDKEI---VCGAT  256 (636)
T ss_pred             ccCCCCcceEEeeccCceEEecchhhHHHHhhhhcccccccceEEEEEEeCCCceEEEEEecCceEEeeccc---cccCC
Confidence            33567777777888888988887652211111    112367999999998877777888899999998621   00000


Q ss_pred             CCCCCCCCCCccCCCCcceEEEEECCCCCEEEEecCCCcEEEEEcccceeeeeecCCccceEEEEEcCCCCcEEEEEeCC
Q 021247          143 IPRPEGLKPTDKSSSKKFVLSVAWSPDGRRIACGSMDGTISVFDVTRAKFLHHLEGHFMPVRSLVYSPVDPRVLFSASDD  222 (315)
Q Consensus       143 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~s~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d  222 (315)
                        .+                +-...+++..|......+.      .+..++..+.-....|..++|+| ++++|++.+.|
T Consensus       257 --~p----------------~~~~~k~~~~f~i~t~ksk------~~rNPv~~w~~~~g~in~f~FS~-DG~~LA~VSqD  311 (636)
T KOG2394|consen  257 --AP----------------SYQALKDGDQFAILTSKSK------KTRNPVARWHIGEGSINEFAFSP-DGKYLATVSQD  311 (636)
T ss_pred             --CC----------------cccccCCCCeeEEeeeecc------ccCCccceeEeccccccceeEcC-CCceEEEEecC
Confidence              00                1111234444433221110      01122223333345889999999 88999999999


Q ss_pred             CeEEEEeCCCCeeEEEeecccccEEEEEEcCCCCeEEEEeCCCcEEEEecCccceehcccccccceEEEEEe
Q 021247          223 THVHMYDAEGKSLVTAMSGHASWVLSVDASPDGAAITTGSSDRTVKLWDLNMRAAMQSMTNHTDQVWGVSFR  294 (315)
Q Consensus       223 ~~i~~wd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s  294 (315)
                      |.++|||..+.+++..+..--+...+++|+|||+++++|+.|--|.||.+..++.+..-.+|..+|..|+|.
T Consensus       312 GfLRvF~fdt~eLlg~mkSYFGGLLCvcWSPDGKyIvtGGEDDLVtVwSf~erRVVARGqGHkSWVs~VaFD  383 (636)
T KOG2394|consen  312 GFLRIFDFDTQELLGVMKSYFGGLLCVCWSPDGKYIVTGGEDDLVTVWSFEERRVVARGQGHKSWVSVVAFD  383 (636)
T ss_pred             ceEEEeeccHHHHHHHHHhhccceEEEEEcCCccEEEecCCcceEEEEEeccceEEEeccccccceeeEeec
Confidence            999999998888777666656779999999999999999999999999999999998888999999999998

>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]

Probab=99.67  E-value=1.5e-13  Score=108.07  Aligned_cols=273  Identities=16%  Similarity=0.230  Sum_probs=181.9

Q ss_pred             cceEEEEEeecCCCCCcEEEEeeCCCcEEEEcCCCCcceeeccccccceEEEEeCCCC-CEEEEeeCCCeEEEEECCCCc
Q 021247           15 ESVWAVTWVPATETRPALLLTGSLDETVKLWRPDDMQLERTNTGHCLGVVSVAAHPSG-IIAASASLDSFVRVFDVDTNA   93 (315)
Q Consensus        15 ~~v~~v~~~~~~~~~~~~l~sgs~d~~v~~w~~~~~~~~~~~~~h~~~v~~~~~~~~g-~~l~s~~~d~~i~~w~~~~~~   93 (315)
                      +.|--+.|.-+..   -+|.....|+.|.+|+....+-.-.+..-..++.+++++|+| .+|.+...|-.|-+|.+.+.+
T Consensus        49 dki~yieW~ads~---~ilC~~yk~~~vqvwsl~Qpew~ckIdeg~agls~~~WSPdgrhiL~tseF~lriTVWSL~t~~  125 (447)
T KOG4497|consen   49 DKIVYIEWKADSC---HILCVAYKDPKVQVWSLVQPEWYCKIDEGQAGLSSISWSPDGRHILLTSEFDLRITVWSLNTQK  125 (447)
T ss_pred             HHhhheeeeccce---eeeeeeeccceEEEEEeecceeEEEeccCCCcceeeeECCCcceEeeeecceeEEEEEEeccce
Confidence            4666778875443   256666789999999987766555566667889999999999 677788899999999998866


Q ss_pred             eeEEeeCCcccEEEEEECCCCCeEEEEecC-----------------------------------CCeEEEEecCCccee
Q 021247           94 SIATLEASPSEVWQMQFDPKGTTLAVAGGG-----------------------------------SASVKLWDTATWNLI  138 (315)
Q Consensus        94 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~-----------------------------------d~~i~~~d~~~~~~~  138 (315)
                      .. .+...+..+..++|+|+|++.++..-.                                   +..+.+||..-.-.+
T Consensus       126 ~~-~~~~pK~~~kg~~f~~dg~f~ai~sRrDCkdyv~i~~c~~W~ll~~f~~dT~DltgieWsPdg~~laVwd~~Leykv  204 (447)
T KOG4497|consen  126 GY-LLPHPKTNVKGYAFHPDGQFCAILSRRDCKDYVQISSCKAWILLKEFKLDTIDLTGIEWSPDGNWLAVWDNVLEYKV  204 (447)
T ss_pred             eE-EecccccCceeEEECCCCceeeeeecccHHHHHHHHhhHHHHHHHhcCCCcccccCceECCCCcEEEEecchhhhee
Confidence            53 334444556888999999865543211                                   122333332110000


Q ss_pred             eeecCCCCCCCCCCccCCCCcceEEEEECCCCCEEEEecCCCcEEEEEcccceeee------------------------
Q 021247          139 ATLSIPRPEGLKPTDKSSSKKFVLSVAWSPDGRRIACGSMDGTISVFDVTRAKFLH------------------------  194 (315)
Q Consensus       139 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~s~dg~i~i~d~~~~~~~~------------------------  194 (315)
                        +.            ....-.+..+.|+|.++.|+.|+.|+.+++-+--+-+...                        
T Consensus       205 --~a------------Ye~~lG~k~v~wsP~~qflavGsyD~~lrvlnh~tWk~f~eflhl~s~~dp~~~~~~ke~~~~~  270 (447)
T KOG4497|consen  205 --YA------------YERGLGLKFVEWSPCNQFLAVGSYDQMLRVLNHFTWKPFGEFLHLCSYHDPTLHLLEKETFSIV  270 (447)
T ss_pred             --ee------------eeeccceeEEEeccccceEEeeccchhhhhhceeeeeehhhhccchhccCchhhhhhhhhcchh
Confidence              00            0011236789999999999999999998875421111000                        


Q ss_pred             ------------------------------------eec------CCccceEEEEEcCCCCcEEEEEeC--CCeEEEEeC
Q 021247          195 ------------------------------------HLE------GHFMPVRSLVYSPVDPRVLFSASD--DTHVHMYDA  230 (315)
Q Consensus       195 ------------------------------------~~~------~~~~~v~~~~~~~~~~~~l~s~~~--d~~i~~wd~  230 (315)
                                                          .++      .....+..++|++ +..++++-.+  -+.+.+||+
T Consensus       271 ql~~~cLsf~p~~~~a~~~~~se~~YE~~~~pv~~~~lkp~tD~pnPk~g~g~lafs~-Ds~y~aTrnd~~PnalW~Wdl  349 (447)
T KOG4497|consen  271 QLLHHCLSFTPTDLEAHIWEESETIYEQQMTPVKVHKLKPPTDFPNPKCGAGKLAFSC-DSTYAATRNDKYPNALWLWDL  349 (447)
T ss_pred             hhcccccccCCCccccCccccchhhhhhhhcceeeecccCCCCCCCcccccceeeecC-CceEEeeecCCCCceEEEEec
Confidence                                                000      0112345678887 5666665544  257999999


Q ss_pred             CCCeeEEEeecccccEEEEEEcCCCCeEEEEeCCCcEEEEecCccceehcccccccceEEEEEeeCCCEEEEEeCCCc
Q 021247          231 EGKSLVTAMSGHASWVLSVDASPDGAAITTGSSDRTVKLWDLNMRAAMQSMTNHTDQVWGVSFRPLGGRVVSVSDDKS  308 (315)
Q Consensus       231 ~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~  308 (315)
                      +..++-..+. ...+|....|+|...-|+.+....++++|-..- ...-..+...=.|..+.|.-+|..++-.+.|..
T Consensus       350 q~l~l~avLi-Qk~piraf~WdP~~prL~vctg~srLY~W~psg-~~~V~vP~~GF~i~~l~W~~~g~~i~l~~kDaf  425 (447)
T KOG4497|consen  350 QNLKLHAVLI-QKHPIRAFEWDPGRPRLVVCTGKSRLYFWAPSG-PRVVGVPKKGFNIQKLQWLQPGEFIVLCGKDAF  425 (447)
T ss_pred             hhhhhhhhhh-hccceeEEEeCCCCceEEEEcCCceEEEEcCCC-ceEEecCCCCceeeeEEecCCCcEEEEEcCCce
Confidence            8766544332 355799999999888888887778899997764 333334455567899999999999998888864

>PRK05137 tolB translocation protein TolB; Provisional

Probab=99.67  E-value=1.8e-13  Score=119.34  Aligned_cols=206  Identities=19%  Similarity=0.216  Sum_probs=135.8

Q ss_pred             CeEEEEECCCCceeEEeeCCcccEEEEEECCCCCeEEEEec--CCCeEEEEecCCcceeeeecCCCCCCCCCCccCCCCc
Q 021247           82 SFVRVFDVDTNASIATLEASPSEVWQMQFDPKGTTLAVAGG--GSASVKLWDTATWNLIATLSIPRPEGLKPTDKSSSKK  159 (315)
Q Consensus        82 ~~i~~w~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~--~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~  159 (315)
                      ..|.++|.... ....+..+...+...+|+|+|+.++++..  .+..|.+||+.+++......              ...
T Consensus       182 ~~l~~~d~dg~-~~~~lt~~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~~~l~~--------------~~g  246 (435)
T PRK05137        182 KRLAIMDQDGA-NVRYLTDGSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQRELVGN--------------FPG  246 (435)
T ss_pred             eEEEEECCCCC-CcEEEecCCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcEEEeec--------------CCC
Confidence            47888888544 44555566778999999999998876643  35689999998765432111              112


Q ss_pred             ceEEEEECCCCCEEE-EecCCCc--EEEEEcccceeeeeecCCccceEEEEEcCCCCcEEEEEeCCC--eEEEEeCCCCe
Q 021247          160 FVLSVAWSPDGRRIA-CGSMDGT--ISVFDVTRAKFLHHLEGHFMPVRSLVYSPVDPRVLFSASDDT--HVHMYDAEGKS  234 (315)
Q Consensus       160 ~i~~~~~~~~~~~l~-~~s~dg~--i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~--~i~~wd~~~~~  234 (315)
                      .+...+|+|+|+.|+ +.+.++.  |++||+.++.. ..+..+........|+|++..++++...++  .|+++|..++.
T Consensus       247 ~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~~~-~~Lt~~~~~~~~~~~spDG~~i~f~s~~~g~~~Iy~~d~~g~~  325 (435)
T PRK05137        247 MTFAPRFSPDGRKVVMSLSQGGNTDIYTMDLRSGTT-TRLTDSPAIDTSPSYSPDGSQIVFESDRSGSPQLYVMNADGSN  325 (435)
T ss_pred             cccCcEECCCCCEEEEEEecCCCceEEEEECCCCce-EEccCCCCccCceeEcCCCCEEEEEECCCCCCeEEEEECCCCC
Confidence            355789999999875 4555554  77889877654 345555555677899995444444443333  68888887665


Q ss_pred             eEEEeecccccEEEEEEcCCCCeEEEEeCC---CcEEEEecCccceehcccccccceEEEEEeeCCCEEEEEeCC
Q 021247          235 LVTAMSGHASWVLSVDASPDGAAITTGSSD---RTVKLWDLNMRAAMQSMTNHTDQVWGVSFRPLGGRVVSVSDD  306 (315)
Q Consensus       235 ~~~~~~~~~~~i~~~~~~~~~~~l~s~~~d---~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d  306 (315)
                      .. .+..+...+....|+|+|+.|+..+.+   ..|.+||+..+.. ..+. ....+....|+|||+.|+..+.+
T Consensus       326 ~~-~lt~~~~~~~~~~~SpdG~~ia~~~~~~~~~~i~~~d~~~~~~-~~lt-~~~~~~~p~~spDG~~i~~~~~~  397 (435)
T PRK05137        326 PR-RISFGGGRYSTPVWSPRGDLIAFTKQGGGQFSIGVMKPDGSGE-RILT-SGFLVEGPTWAPNGRVIMFFRQT  397 (435)
T ss_pred             eE-EeecCCCcccCeEECCCCCEEEEEEcCCCceEEEEEECCCCce-Eecc-CCCCCCCCeECCCCCEEEEEEcc
Confidence            43 333334456678899999988776543   3578888765432 2222 12345678999999998765543

>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]

Probab=99.67  E-value=7.8e-15  Score=130.63  Aligned_cols=193  Identities=20%  Similarity=0.274  Sum_probs=147.2

Q ss_pred             EEECCCCCeEEEEecCCCeEEEEecCCcceeeeecCCCCCCCCCCccCCCCcceEEEEECCCCCEEEEecCCCcEEEEEc
Q 021247          108 MQFDPKGTTLAVAGGGSASVKLWDTATWNLIATLSIPRPEGLKPTDKSSSKKFVLSVAWSPDGRRIACGSMDGTISVFDV  187 (315)
Q Consensus       108 ~~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~s~dg~i~i~d~  187 (315)
                      ..+......++ ....++.+-+||.........+..+....         -....-+..+++.-++++|+.-+.|.+|+.
T Consensus        93 ~~l~~e~k~i~-l~~~~ns~~i~d~~~~~~~~~i~~~er~~---------l~~~~~~g~s~~~~~i~~gsv~~~iivW~~  162 (967)
T KOG0974|consen   93 AKLFEENKKIA-LVTSRNSLLIRDSKNSSVLSKIQSDERCT---------LYSSLIIGDSAEELYIASGSVFGEIIVWKP  162 (967)
T ss_pred             cchhhhcceEE-EEEcCceEEEEecccCceehhcCCCceEE---------EEeEEEEeccCcEEEEEeccccccEEEEec
Confidence            33333444443 44567889999987655443332111100         001223344566668999999999999998


Q ss_pred             ccceeeeeecCCccceEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCeeEE-EeecccccEEEEEEcCCCCeEEEEeCCCc
Q 021247          188 TRAKFLHHLEGHFMPVRSLVYSPVDPRVLFSASDDTHVHMYDAEGKSLVT-AMSGHASWVLSVDASPDGAAITTGSSDRT  266 (315)
Q Consensus       188 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~-~~~~~~~~i~~~~~~~~~~~l~s~~~d~~  266 (315)
                      ........+.+|.+.|.++.++. +++++++.++|+++++|++.+.+... ..-+|+..++.+.+.|+  .++|++.|.+
T Consensus       163 ~~dn~p~~l~GHeG~iF~i~~s~-dg~~i~s~SdDRsiRlW~i~s~~~~~~~~fgHsaRvw~~~~~~n--~i~t~gedct  239 (967)
T KOG0974|consen  163 HEDNKPIRLKGHEGSIFSIVTSL-DGRYIASVSDDRSIRLWPIDSREVLGCTGFGHSARVWACCFLPN--RIITVGEDCT  239 (967)
T ss_pred             cccCCcceecccCCceEEEEEcc-CCcEEEEEecCcceeeeecccccccCcccccccceeEEEEeccc--eeEEeccceE
Confidence            73333335889999999999996 78999999999999999999887765 66789999999999998  8999999999


Q ss_pred             EEEEecCccceehcccccc-cceEEEEEeeCCCEEEEEeCCCcEEEeec
Q 021247          267 VKLWDLNMRAAMQSMTNHT-DQVWGVSFRPLGGRVVSVSDDKSISLYEY  314 (315)
Q Consensus       267 i~iwd~~~~~~~~~~~~~~-~~v~~~~~s~~~~~l~s~~~d~~i~i~~~  314 (315)
                      .++|+.+ +..+.++..|. +.+|.++.+++...++|++.|+.+++|++
T Consensus       240 crvW~~~-~~~l~~y~~h~g~~iw~~~~~~~~~~~vT~g~Ds~lk~~~l  287 (967)
T KOG0974|consen  240 CRVWGVN-GTQLEVYDEHSGKGIWKIAVPIGVIIKVTGGNDSTLKLWDL  287 (967)
T ss_pred             EEEEecc-cceehhhhhhhhcceeEEEEcCCceEEEeeccCcchhhhhh
Confidence            9999776 45566777776 57999999999989999999999999986

>PRK03629 tolB translocation protein TolB; Provisional

Probab=99.67  E-value=2.5e-13  Score=117.86  Aligned_cols=213  Identities=20%  Similarity=0.219  Sum_probs=137.3

Q ss_pred             CeEEEEECCCCceeEEeeCCcccEEEEEECCCCCeEEEEec--CCCeEEEEecCCcceeeeecCCCCCCCCCCccCCCCc
Q 021247           82 SFVRVFDVDTNASIATLEASPSEVWQMQFDPKGTTLAVAGG--GSASVKLWDTATWNLIATLSIPRPEGLKPTDKSSSKK  159 (315)
Q Consensus        82 ~~i~~w~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~--~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~  159 (315)
                      ..|.++|...... ..+..+...+...+|+|+|+.++++..  .+..+.+||+.+++.......              ..
T Consensus       179 ~~l~~~d~dg~~~-~~lt~~~~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~~l~~~--------------~~  243 (429)
T PRK03629        179 YELRVSDYDGYNQ-FVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQVASF--------------PR  243 (429)
T ss_pred             eeEEEEcCCCCCC-EEeecCCCceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCeEEccCC--------------CC
Confidence            3688999875543 334445668899999999998876542  345799999887653322211              11


Q ss_pred             ceEEEEECCCCCEEEEe-cCCC--cEEEEEcccceeeeeecCCccceEEEEEcCCCCcEEEEEeCCC--eEEEEeCCCCe
Q 021247          160 FVLSVAWSPDGRRIACG-SMDG--TISVFDVTRAKFLHHLEGHFMPVRSLVYSPVDPRVLFSASDDT--HVHMYDAEGKS  234 (315)
Q Consensus       160 ~i~~~~~~~~~~~l~~~-s~dg--~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~--~i~~wd~~~~~  234 (315)
                      ......|+|||+.|+.. +.+|  .|++||+.+++... +..+...+....|+|++..++++...++  .|+++|..++.
T Consensus       244 ~~~~~~~SPDG~~La~~~~~~g~~~I~~~d~~tg~~~~-lt~~~~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~~~g~  322 (429)
T PRK03629        244 HNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQIRQ-VTDGRSNNTEPTWFPDSQNLAYTSDQAGRPQVYKVNINGGA  322 (429)
T ss_pred             CcCCeEECCCCCEEEEEEcCCCCcEEEEEECCCCCEEE-ccCCCCCcCceEECCCCCEEEEEeCCCCCceEEEEECCCCC
Confidence            13457899999988754 4444  59999998776543 3334446678899995443444444444  45555776654


Q ss_pred             eEEEeecccccEEEEEEcCCCCeEEEEeCC---CcEEEEecCccceehcccccccceEEEEEeeCCCEEEEEeCCCc---
Q 021247          235 LVTAMSGHASWVLSVDASPDGAAITTGSSD---RTVKLWDLNMRAAMQSMTNHTDQVWGVSFRPLGGRVVSVSDDKS---  308 (315)
Q Consensus       235 ~~~~~~~~~~~i~~~~~~~~~~~l~s~~~d---~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~---  308 (315)
                      .. .+..+........|+|+|+.++..+.+   ..|.+||+..++.. .+... ....+..|+|||++|+..+.++.   
T Consensus       323 ~~-~lt~~~~~~~~~~~SpDG~~Ia~~~~~~g~~~I~~~dl~~g~~~-~Lt~~-~~~~~p~~SpDG~~i~~~s~~~~~~~  399 (429)
T PRK03629        323 PQ-RITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQ-VLTDT-FLDETPSIAPNGTMVIYSSSQGMGSV  399 (429)
T ss_pred             eE-EeecCCCCccCEEECCCCCEEEEEEccCCCceEEEEECCCCCeE-EeCCC-CCCCCceECCCCCEEEEEEcCCCceE
Confidence            33 333334445678899999988776543   35888998876533 22221 12346789999999998888765   


Q ss_pred             EEEee
Q 021247          309 ISLYE  313 (315)
Q Consensus       309 i~i~~  313 (315)
                      +.+++
T Consensus       400 l~~~~  404 (429)
T PRK03629        400 LNLVS  404 (429)
T ss_pred             EEEEE
Confidence            44544

>PRK04922 tolB translocation protein TolB; Provisional

Probab=99.66  E-value=8.2e-14  Score=121.37  Aligned_cols=213  Identities=22%  Similarity=0.276  Sum_probs=136.9

Q ss_pred             CeEEEEECCCCceeEEeeCCcccEEEEEECCCCCeEEEEecC--CCeEEEEecCCcceeeeecCCCCCCCCCCccCCCCc
Q 021247           82 SFVRVFDVDTNASIATLEASPSEVWQMQFDPKGTTLAVAGGG--SASVKLWDTATWNLIATLSIPRPEGLKPTDKSSSKK  159 (315)
Q Consensus        82 ~~i~~w~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~--d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~  159 (315)
                      ..|.+||.... ....+..+...+...+|+|+++.++++...  ..+|.+||+.+++.......              ..
T Consensus       184 ~~l~i~D~~g~-~~~~lt~~~~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~~~l~~~--------------~g  248 (433)
T PRK04922        184 YALQVADSDGY-NPQTILRSAEPILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQRELVASF--------------RG  248 (433)
T ss_pred             EEEEEECCCCC-CceEeecCCCccccccCCCCCCEEEEEecCCCCcEEEEEECCCCCEEEeccC--------------CC
Confidence            46899998644 344455566778899999999988776533  35799999977654322111              11


Q ss_pred             ceEEEEECCCCCEEE-EecCCC--cEEEEEcccceeeeeecCCccceEEEEEcCCCCcEEEEEeCCCe--EEEEeCCCCe
Q 021247          160 FVLSVAWSPDGRRIA-CGSMDG--TISVFDVTRAKFLHHLEGHFMPVRSLVYSPVDPRVLFSASDDTH--VHMYDAEGKS  234 (315)
Q Consensus       160 ~i~~~~~~~~~~~l~-~~s~dg--~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~--i~~wd~~~~~  234 (315)
                      ......|+|+|+.++ +.+.+|  .|++||+.+++. ..+..+........|+|++..++++...++.  |+++|..+++
T Consensus       249 ~~~~~~~SpDG~~l~~~~s~~g~~~Iy~~d~~~g~~-~~lt~~~~~~~~~~~spDG~~l~f~sd~~g~~~iy~~dl~~g~  327 (433)
T PRK04922        249 INGAPSFSPDGRRLALTLSRDGNPEIYVMDLGSRQL-TRLTNHFGIDTEPTWAPDGKSIYFTSDRGGRPQIYRVAASGGS  327 (433)
T ss_pred             CccCceECCCCCEEEEEEeCCCCceEEEEECCCCCe-EECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCC
Confidence            234679999999775 445555  599999987764 3344454455678999954444444444444  7777776654


Q ss_pred             eEEEeecccccEEEEEEcCCCCeEEEEeCCC---cEEEEecCccceehcccccccceEEEEEeeCCCEEEEEeCC-C--c
Q 021247          235 LVTAMSGHASWVLSVDASPDGAAITTGSSDR---TVKLWDLNMRAAMQSMTNHTDQVWGVSFRPLGGRVVSVSDD-K--S  308 (315)
Q Consensus       235 ~~~~~~~~~~~i~~~~~~~~~~~l~s~~~d~---~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d-~--~  308 (315)
                      ... +..+.......+|+|+|+.++..+.++   .|.+||+..++.. .+. +........|+|||++|+..+.+ +  .
T Consensus       328 ~~~-lt~~g~~~~~~~~SpDG~~Ia~~~~~~~~~~I~v~d~~~g~~~-~Lt-~~~~~~~p~~spdG~~i~~~s~~~g~~~  404 (433)
T PRK04922        328 AER-LTFQGNYNARASVSPDGKKIAMVHGSGGQYRIAVMDLSTGSVR-TLT-PGSLDESPSFAPNGSMVLYATREGGRGV  404 (433)
T ss_pred             eEE-eecCCCCccCEEECCCCCEEEEEECCCCceeEEEEECCCCCeE-ECC-CCCCCCCceECCCCCEEEEEEecCCceE
Confidence            332 222333445689999999887665443   5899999876544 332 22234567899999998766654 3  3


Q ss_pred             EEEee
Q 021247          309 ISLYE  313 (315)
Q Consensus       309 i~i~~  313 (315)
                      |.+++
T Consensus       405 L~~~~  409 (433)
T PRK04922        405 LAAVS  409 (433)
T ss_pred             EEEEE
Confidence            44444

>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]

Probab=99.66  E-value=2.4e-14  Score=111.92  Aligned_cols=204  Identities=20%  Similarity=0.266  Sum_probs=151.3

Q ss_pred             eeCCcccEEEEEECCCCCeEEEEecCCCeEEEEecCCcceeeeecCCCCCCCCCCccCCCCcceEEEEECCCCCEEEEec
Q 021247           98 LEASPSEVWQMQFDPKGTTLAVAGGGSASVKLWDTATWNLIATLSIPRPEGLKPTDKSSSKKFVLSVAWSPDGRRIACGS  177 (315)
Q Consensus        98 ~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~s  177 (315)
                      +.....+|.+.+|+++...+++ +-....|.||.....+.-...          .....|...|++++|+|..+.|++|+
T Consensus         6 ~~~~~~pitchAwn~drt~iAv-~~~~~evhiy~~~~~~~w~~~----------htls~Hd~~vtgvdWap~snrIvtcs   74 (361)
T KOG1523|consen    6 FHRLLEPITCHAWNSDRTQIAV-SPNNHEVHIYSMLGADLWEPA----------HTLSEHDKIVTGVDWAPKSNRIVTCS   74 (361)
T ss_pred             eeeccCceeeeeecCCCceEEe-ccCCceEEEEEecCCCCceec----------eehhhhCcceeEEeecCCCCceeEcc
Confidence            3334678999999999887755 456778999987654321111          12234566799999999999999999


Q ss_pred             CCCcEEEEEc-ccceee--eeecCCccceEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCee--EE--EeecccccEEEEE
Q 021247          178 MDGTISVFDV-TRAKFL--HHLEGHFMPVRSLVYSPVDPRVLFSASDDTHVHMYDAEGKSL--VT--AMSGHASWVLSVD  250 (315)
Q Consensus       178 ~dg~i~i~d~-~~~~~~--~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~--~~--~~~~~~~~i~~~~  250 (315)
                      .|..-++|.. ..++..  ..+.-++...+++.|+| ..+.+++|+.-+.|-+|=.+...-  +.  .-..+...|++++
T Consensus        75 ~drnayVw~~~~~~~WkptlvLlRiNrAAt~V~WsP-~enkFAVgSgar~isVcy~E~ENdWWVsKhikkPirStv~sld  153 (361)
T KOG1523|consen   75 HDRNAYVWTQPSGGTWKPTLVLLRINRAATCVKWSP-KENKFAVGSGARLISVCYYEQENDWWVSKHIKKPIRSTVTSLD  153 (361)
T ss_pred             CCCCccccccCCCCeeccceeEEEeccceeeEeecC-cCceEEeccCccEEEEEEEecccceehhhhhCCccccceeeee
Confidence            9999999998 444433  33445788999999999 677899999999988876554321  11  1123566789999


Q ss_pred             EcCCCCeEEEEeCCCcEEEEecCc------------------cceehcccccccceEEEEEeeCCCEEEEEeCCCcEEEe
Q 021247          251 ASPDGAAITTGSSDRTVKLWDLNM------------------RAAMQSMTNHTDQVWGVSFRPLGGRVVSVSDDKSISLY  312 (315)
Q Consensus       251 ~~~~~~~l~s~~~d~~i~iwd~~~------------------~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~i~i~  312 (315)
                      |+|++-+|++|+.|++.|+|..--                  +....++....+.+..+.|+|+|..|+=.+-|.++.+=
T Consensus       154 WhpnnVLlaaGs~D~k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~~~~ggwvh~v~fs~sG~~lawv~Hds~v~~~  233 (361)
T KOG1523|consen  154 WHPNNVLLAAGSTDGKCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEASSSGGWVHGVLFSPSGNRLAWVGHDSTVSFV  233 (361)
T ss_pred             ccCCcceecccccCcceeEEEEeeeccccCCCCCCCccCCcHHHHHHhhccCCCceeeeEeCCCCCEeeEecCCCceEEe
Confidence            999999999999999999996421                  11122233345789999999999999999999998775


Q ss_pred             e
Q 021247          313 E  313 (315)
Q Consensus       313 ~  313 (315)
                      |
T Consensus       234 d  234 (361)
T KOG1523|consen  234 D  234 (361)
T ss_pred             e
Confidence            4

>KOG3881 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.65  E-value=5.9e-14  Score=112.52  Aligned_cols=236  Identities=13%  Similarity=0.182  Sum_probs=166.8

Q ss_pred             cceEEEEeCCCC--CEEEEeeCCCeEEEEECCCCceeEE------eeCCcccEEEEEECCCCCeEEEEecCCCeEEEEec
Q 021247           61 LGVVSVAAHPSG--IIAASASLDSFVRVFDVDTNASIAT------LEASPSEVWQMQFDPKGTTLAVAGGGSASVKLWDT  132 (315)
Q Consensus        61 ~~v~~~~~~~~g--~~l~s~~~d~~i~~w~~~~~~~~~~------~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~~d~  132 (315)
                      ..+.++.|..++  ..+...+.|..+....+........      ......+|..++.. ++  .+++|-.+|.+.+|..
T Consensus        56 ~ris~l~~~~d~~tevl~~r~~~~~~~~~~~~E~~~~s~~~~~~~~~l~~~~I~gl~~~-dg--~Litc~~sG~l~~~~~  132 (412)
T KOG3881|consen   56 DRISSLLFGVDGETEVLNARSADDDLPKFVIEEFEISSSLDDAKTVSLGTKSIKGLKLA-DG--TLITCVSSGNLQVRHD  132 (412)
T ss_pred             hhhhhheeecCCceeEeeccccCcccccccccCCccccccccccccccccccccchhhc-CC--EEEEEecCCcEEEEec
Confidence            456666665444  4566565676777766665543322      22334455555543 22  4567788999999988


Q ss_pred             CCcc-----eeeeecCCCCCCCCCCccCCCCcceEEEEECCCCC-EEEEecCC--CcEEEEEcccceeeeeecC------
Q 021247          133 ATWN-----LIATLSIPRPEGLKPTDKSSSKKFVLSVAWSPDGR-RIACGSMD--GTISVFDVTRAKFLHHLEG------  198 (315)
Q Consensus       133 ~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~l~~~s~d--g~i~i~d~~~~~~~~~~~~------  198 (315)
                      ..+.     ++.....               ..+..+.-.+... .+++|+..  ..+.+||+++.+.+-.-+.      
T Consensus       133 k~~d~hss~l~~la~g---------------~g~~~~r~~~~~p~Iva~GGke~~n~lkiwdle~~~qiw~aKNvpnD~L  197 (412)
T KOG3881|consen  133 KSGDLHSSKLIKLATG---------------PGLYDVRQTDTDPYIVATGGKENINELKIWDLEQSKQIWSAKNVPNDRL  197 (412)
T ss_pred             cCCccccccceeeecC---------------CceeeeccCCCCCceEecCchhcccceeeeecccceeeeeccCCCCccc
Confidence            7432     1111110               1133444455444 45669988  8899999987754432221      


Q ss_pred             -Cccc--eEEEEEcCC-CCcEEEEEeCCCeEEEEeCCCC-eeEEEeecccccEEEEEEcCCCCeEEEEeCCCcEEEEecC
Q 021247          199 -HFMP--VRSLVYSPV-DPRVLFSASDDTHVHMYDAEGK-SLVTAMSGHASWVLSVDASPDGAAITTGSSDRTVKLWDLN  273 (315)
Q Consensus       199 -~~~~--v~~~~~~~~-~~~~l~s~~~d~~i~~wd~~~~-~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~d~~i~iwd~~  273 (315)
                       -.-|  ++++.|-|. ..+.|++++.-+.+++||.+.+ .++..+.-...+++++...|.+..+++|..-+.+..||++
T Consensus       198 ~LrVPvW~tdi~Fl~g~~~~~fat~T~~hqvR~YDt~~qRRPV~~fd~~E~~is~~~l~p~gn~Iy~gn~~g~l~~FD~r  277 (412)
T KOG3881|consen  198 GLRVPVWITDIRFLEGSPNYKFATITRYHQVRLYDTRHQRRPVAQFDFLENPISSTGLTPSGNFIYTGNTKGQLAKFDLR  277 (412)
T ss_pred             cceeeeeeccceecCCCCCceEEEEecceeEEEecCcccCcceeEeccccCcceeeeecCCCcEEEEecccchhheeccc
Confidence             1113  457778762 2678999999999999999854 5666666667889999999999999999999999999999


Q ss_pred             ccceehc-ccccccceEEEEEeeCCCEEEEEeCCCcEEEeec
Q 021247          274 MRAAMQS-MTNHTDQVWGVSFRPLGGRVVSVSDDKSISLYEY  314 (315)
Q Consensus       274 ~~~~~~~-~~~~~~~v~~~~~s~~~~~l~s~~~d~~i~i~~~  314 (315)
                      .++.+.. +.+..+.+.++..+|.+.+|+++|.|+.+||||.
T Consensus       278 ~~kl~g~~~kg~tGsirsih~hp~~~~las~GLDRyvRIhD~  319 (412)
T KOG3881|consen  278 GGKLLGCGLKGITGSIRSIHCHPTHPVLASCGLDRYVRIHDI  319 (412)
T ss_pred             CceeeccccCCccCCcceEEEcCCCceEEeeccceeEEEeec
Confidence            9887766 7888899999999999999999999999999996

>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]

Probab=99.65  E-value=9.7e-15  Score=121.46  Aligned_cols=191  Identities=23%  Similarity=0.336  Sum_probs=135.7

Q ss_pred             EEEeeCCCcEEEEcCCCCcceeecc----ccccceEEEEeCCCC-CEEEEeeCCCeEEEEECCCCceeEEeeCCcccEEE
Q 021247           33 LLTGSLDETVKLWRPDDMQLERTNT----GHCLGVVSVAAHPSG-IIAASASLDSFVRVFDVDTNASIATLEASPSEVWQ  107 (315)
Q Consensus        33 l~sgs~d~~v~~w~~~~~~~~~~~~----~h~~~v~~~~~~~~g-~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~v~~  107 (315)
                      ++.|-..|.|++.++...+..+.+.    -.+..|+++.|-|.+ .+++.+-.+|.++++|.+-...      ...+.  
T Consensus       188 llIGf~tGqvq~idp~~~~~sklfne~r~i~ktsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~~~~------~t~p~--  259 (636)
T KOG2394|consen  188 LLIGFTTGQVQLIDPINFEVSKLFNEERLINKSSVTCIKWVPGSDSLFLVAHASGNLYLYDKEIVCG------ATAPS--  259 (636)
T ss_pred             eEEeeccCceEEecchhhHHHHhhhhcccccccceEEEEEEeCCCceEEEEEecCceEEeecccccc------CCCCc--
Confidence            6778888999999876644433222    123579999998754 5677788899999998732110      00111  


Q ss_pred             EEECCCCCeEEEEecCCCeEEEEecCCcceeeeecCCCCCCCCCCccCCCCcceEEEEECCCCCEEEEecCCCcEEEEEc
Q 021247          108 MQFDPKGTTLAVAGGGSASVKLWDTATWNLIATLSIPRPEGLKPTDKSSSKKFVLSVAWSPDGRRIACGSMDGTISVFDV  187 (315)
Q Consensus       108 ~~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~s~dg~i~i~d~  187 (315)
                      ....+++..+.+--+..       ..+.+.+..+.+             .+..|...+|+|||++||+.+.||.++|||.
T Consensus       260 ~~~~k~~~~f~i~t~ks-------k~~rNPv~~w~~-------------~~g~in~f~FS~DG~~LA~VSqDGfLRvF~f  319 (636)
T KOG2394|consen  260 YQALKDGDQFAILTSKS-------KKTRNPVARWHI-------------GEGSINEFAFSPDGKYLATVSQDGFLRIFDF  319 (636)
T ss_pred             ccccCCCCeeEEeeeec-------cccCCccceeEe-------------ccccccceeEcCCCceEEEEecCceEEEeec
Confidence            11122333222211100       001122222211             1224889999999999999999999999999


Q ss_pred             ccceeeeeecCCccceEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCeeEEEeecccccEEEEEEc
Q 021247          188 TRAKFLHHLEGHFMPVRSLVYSPVDPRVLFSASDDTHVHMYDAEGKSLVTAMSGHASWVLSVDAS  252 (315)
Q Consensus       188 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~i~~~~~~  252 (315)
                      .+.+++..++...+...|+.|+| |++++++|+.|--|.||....++++..-.+|..||..++|+
T Consensus       320 dt~eLlg~mkSYFGGLLCvcWSP-DGKyIvtGGEDDLVtVwSf~erRVVARGqGHkSWVs~VaFD  383 (636)
T KOG2394|consen  320 DTQELLGVMKSYFGGLLCVCWSP-DGKYIVTGGEDDLVTVWSFEERRVVARGQGHKSWVSVVAFD  383 (636)
T ss_pred             cHHHHHHHHHhhccceEEEEEcC-CccEEEecCCcceEEEEEeccceEEEeccccccceeeEeec
Confidence            98888877777788899999999 78999999999999999999999999999999999999998

>PRK02889 tolB translocation protein TolB; Provisional

Probab=99.65  E-value=7.8e-14  Score=121.13  Aligned_cols=207  Identities=23%  Similarity=0.280  Sum_probs=130.9

Q ss_pred             CeEEEEECCCCceeEEeeCCcccEEEEEECCCCCeEEEEecCC--CeEEEEecCCcceeeeecCCCCCCCCCCccCCCCc
Q 021247           82 SFVRVFDVDTNASIATLEASPSEVWQMQFDPKGTTLAVAGGGS--ASVKLWDTATWNLIATLSIPRPEGLKPTDKSSSKK  159 (315)
Q Consensus        82 ~~i~~w~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d--~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~  159 (315)
                      ..|.++|.. +.....+..+...+...+|+|+++.++++...+  ..|.+||+.+++.......              ..
T Consensus       176 ~~L~~~D~d-G~~~~~l~~~~~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~~l~~~--------------~g  240 (427)
T PRK02889        176 YQLQISDAD-GQNAQSALSSPEPIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGRRRVVANF--------------KG  240 (427)
T ss_pred             cEEEEECCC-CCCceEeccCCCCcccceEcCCCCEEEEEEccCCCcEEEEEECCCCCEEEeecC--------------CC
Confidence            457777764 333344445667788999999999887765433  4699999987654322111              11


Q ss_pred             ceEEEEECCCCCEEE-EecCCCcEEEE--EcccceeeeeecCCccceEEEEEcCCCCcEEEEEeCCCeEEEEe--CCCCe
Q 021247          160 FVLSVAWSPDGRRIA-CGSMDGTISVF--DVTRAKFLHHLEGHFMPVRSLVYSPVDPRVLFSASDDTHVHMYD--AEGKS  234 (315)
Q Consensus       160 ~i~~~~~~~~~~~l~-~~s~dg~i~i~--d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd--~~~~~  234 (315)
                      .+...+|+|||+.|+ +.+.++...+|  |+..+. ...+..+........|+|++..+++++..++...+|.  ..++.
T Consensus       241 ~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~~-~~~lt~~~~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~~g~  319 (427)
T PRK02889        241 SNSAPAWSPDGRTLAVALSRDGNSQIYTVNADGSG-LRRLTQSSGIDTEPFFSPDGRSIYFTSDRGGAPQIYRMPASGGA  319 (427)
T ss_pred             CccceEECCCCCEEEEEEccCCCceEEEEECCCCC-cEECCCCCCCCcCeEEcCCCCEEEEEecCCCCcEEEEEECCCCc
Confidence            245789999999886 45677765555  444443 3445445445567789995444444544455555554  44443


Q ss_pred             eEEEeecccccEEEEEEcCCCCeEEEEeCCC---cEEEEecCccceehcccccccceEEEEEeeCCCEEEEEeCCC
Q 021247          235 LVTAMSGHASWVLSVDASPDGAAITTGSSDR---TVKLWDLNMRAAMQSMTNHTDQVWGVSFRPLGGRVVSVSDDK  307 (315)
Q Consensus       235 ~~~~~~~~~~~i~~~~~~~~~~~l~s~~~d~---~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~  307 (315)
                      .. .+..+........|+|+|++++..+.++   .|.+||+..++... +... .......|+|||+.|+..+.++
T Consensus       320 ~~-~lt~~g~~~~~~~~SpDG~~Ia~~s~~~g~~~I~v~d~~~g~~~~-lt~~-~~~~~p~~spdg~~l~~~~~~~  392 (427)
T PRK02889        320 AQ-RVTFTGSYNTSPRISPDGKLLAYISRVGGAFKLYVQDLATGQVTA-LTDT-TRDESPSFAPNGRYILYATQQG  392 (427)
T ss_pred             eE-EEecCCCCcCceEECCCCCEEEEEEccCCcEEEEEEECCCCCeEE-ccCC-CCccCceECCCCCEEEEEEecC
Confidence            32 2222223344678999999988776554   59999998765432 2222 2345779999999998777654

>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins

Probab=99.64  E-value=8.2e-14  Score=107.20  Aligned_cols=156  Identities=24%  Similarity=0.450  Sum_probs=106.7

Q ss_pred             EEEEECCCCCeEEEEecC---------CCeEEEEecCCc-ceeeeecCCCCCCCCCCccCCCCcceEEEEECCCCCEEEE
Q 021247          106 WQMQFDPKGTTLAVAGGG---------SASVKLWDTATW-NLIATLSIPRPEGLKPTDKSSSKKFVLSVAWSPDGRRIAC  175 (315)
Q Consensus       106 ~~~~~~~~~~~~~~~~~~---------d~~i~~~d~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~  175 (315)
                      ..+.|+|+|.++++....         -+...+|.++.. .....+.+            .....|..++|+|+|+.|++
T Consensus         9 ~~~~W~~~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~~~~~~i~l------------~~~~~I~~~~WsP~g~~fav   76 (194)
T PF08662_consen    9 AKLHWQPSGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKNIPVESIEL------------KKEGPIHDVAWSPNGNEFAV   76 (194)
T ss_pred             EEEEecccCCEEEEEEEEeeccCcceEEeeEEEEEEecCCCccceeec------------cCCCceEEEEECcCCCEEEE
Confidence            367799999888765541         123444443221 11111111            12234999999999998765


Q ss_pred             --ecCCCcEEEEEcccceeeeeecCCccceEEEEEcCCCCcEEEEEeC---CCeEEEEeCCCCeeEEEeecccccEEEEE
Q 021247          176 --GSMDGTISVFDVTRAKFLHHLEGHFMPVRSLVYSPVDPRVLFSASD---DTHVHMYDAEGKSLVTAMSGHASWVLSVD  250 (315)
Q Consensus       176 --~s~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~---d~~i~~wd~~~~~~~~~~~~~~~~i~~~~  250 (315)
                        |..++.|.+||++ ++.+..+.  ...+..+.|+| ++++++.++.   .|.|.+||.+..+.+.... | ..+..++
T Consensus        77 i~g~~~~~v~lyd~~-~~~i~~~~--~~~~n~i~wsP-~G~~l~~~g~~n~~G~l~~wd~~~~~~i~~~~-~-~~~t~~~  150 (194)
T PF08662_consen   77 IYGSMPAKVTLYDVK-GKKIFSFG--TQPRNTISWSP-DGRFLVLAGFGNLNGDLEFWDVRKKKKISTFE-H-SDATDVE  150 (194)
T ss_pred             EEccCCcccEEEcCc-ccEeEeec--CCCceEEEECC-CCCEEEEEEccCCCcEEEEEECCCCEEeeccc-c-CcEEEEE
Confidence              4467799999996 55555553  45778999999 5667777653   4679999999887776654 2 3478999


Q ss_pred             EcCCCCeEEEEeC------CCcEEEEecCccceehc
Q 021247          251 ASPDGAAITTGSS------DRTVKLWDLNMRAAMQS  280 (315)
Q Consensus       251 ~~~~~~~l~s~~~------d~~i~iwd~~~~~~~~~  280 (315)
                      |+|+|++|+++..      |+.++||+.. |+.+..
T Consensus       151 WsPdGr~~~ta~t~~r~~~dng~~Iw~~~-G~~l~~  185 (194)
T PF08662_consen  151 WSPDGRYLATATTSPRLRVDNGFKIWSFQ-GRLLYK  185 (194)
T ss_pred             EcCCCCEEEEEEeccceeccccEEEEEec-CeEeEe
Confidence            9999999999875      7788999986 554433

>KOG2139 consensus WD40 repeat protein [General function prediction only]

Probab=99.63  E-value=3.6e-13  Score=107.20  Aligned_cols=242  Identities=17%  Similarity=0.228  Sum_probs=154.0

Q ss_pred             ceEEEEeCCCCCEEEEeeCCCeEEEEECCCCceeEEeeC-CcccEEEEEECCCCCeEEEEecCCCeEEEEecCC-cceee
Q 021247           62 GVVSVAAHPSGIIAASASLDSFVRVFDVDTNASIATLEA-SPSEVWQMQFDPKGTTLAVAGGGSASVKLWDTAT-WNLIA  139 (315)
Q Consensus        62 ~v~~~~~~~~g~~l~s~~~d~~i~~w~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~~~~~d~~i~~~d~~~-~~~~~  139 (315)
                      .+..++|++.-.-++.+..|-.||+++-.. .+...++. ....|.+++|-|.+...++.|. .+-|.+|.... .+.-.
T Consensus       100 dlr~~aWhqH~~~fava~nddvVriy~kss-t~pt~Lks~sQrnvtclawRPlsaselavgC-r~gIciW~~s~tln~~r  177 (445)
T KOG2139|consen  100 DLRGVAWHQHIIAFAVATNDDVVRIYDKSS-TCPTKLKSVSQRNVTCLAWRPLSASELAVGC-RAGICIWSDSRTLNANR  177 (445)
T ss_pred             ceeeEeechhhhhhhhhccCcEEEEeccCC-CCCceecchhhcceeEEEeccCCcceeeeee-cceeEEEEcCccccccc
Confidence            466788888666778899999999999877 44444433 3457999999998765544443 46789997643 11111


Q ss_pred             eecCCCCCCCCCCccCCCCcceEEEEECCCCCEEEEec-CCCcEEEEEcccceeeeeecCCccceEEEEEcCCCCcEEEE
Q 021247          140 TLSIPRPEGLKPTDKSSSKKFVLSVAWSPDGRRIACGS-MDGTISVFDVTRAKFLHHLEGHFMPVRSLVYSPVDPRVLFS  218 (315)
Q Consensus       140 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~s-~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s  218 (315)
                      .+... ........+.....+|++|.|++||..+++++ .|..|.+||+.++..+.-....-+.+.-++|+| ++.+|++
T Consensus       178 ~~~~~-s~~~~qvl~~pgh~pVtsmqwn~dgt~l~tAS~gsssi~iWdpdtg~~~pL~~~glgg~slLkwSP-dgd~lfa  255 (445)
T KOG2139|consen  178 NIRMM-STHHLQVLQDPGHNPVTSMQWNEDGTILVTASFGSSSIMIWDPDTGQKIPLIPKGLGGFSLLKWSP-DGDVLFA  255 (445)
T ss_pred             ccccc-cccchhheeCCCCceeeEEEEcCCCCEEeecccCcceEEEEcCCCCCcccccccCCCceeeEEEcC-CCCEEEE
Confidence            10000 00001111222336799999999999998876 567899999998876544433456778899999 6678999


Q ss_pred             EeCCCeEEEEeCCCCeeEEEeecccccEEEEEEcCCCCeEE-EEeCCCcEEEEecCccc--ee-----------hcc---
Q 021247          219 ASDDTHVHMYDAEGKSLVTAMSGHASWVLSVDASPDGAAIT-TGSSDRTVKLWDLNMRA--AM-----------QSM---  281 (315)
Q Consensus       219 ~~~d~~i~~wd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~-s~~~d~~i~iwd~~~~~--~~-----------~~~---  281 (315)
                      +.-|+..++|......-.....-..+.|..-.|+|.|+.|+ +.+..-.++--.+....  ..           ..+   
T Consensus       256 At~davfrlw~e~q~wt~erw~lgsgrvqtacWspcGsfLLf~~sgsp~lysl~f~~~~~~~~~~~~~k~~lliaDL~e~  335 (445)
T KOG2139|consen  256 ATCDAVFRLWQENQSWTKERWILGSGRVQTACWSPCGSFLLFACSGSPRLYSLTFDGEDSVFLRPQSIKRVLLIADLQEV  335 (445)
T ss_pred             ecccceeeeehhcccceecceeccCCceeeeeecCCCCEEEEEEcCCceEEEEeecCCCccccCcccceeeeeeccchhh
Confidence            99999999995433222222222345888999999998654 44443333322221110  00           000   


Q ss_pred             ---cc---cccceEEEEEeeCCCEEEEEeCCC
Q 021247          282 ---TN---HTDQVWGVSFRPLGGRVVSVSDDK  307 (315)
Q Consensus       282 ---~~---~~~~v~~~~~s~~~~~l~s~~~d~  307 (315)
                         .+   ..+++.+++|.|.|.+||..-..+
T Consensus       336 ti~ag~~l~cgeaq~lawDpsGeyLav~fKg~  367 (445)
T KOG2139|consen  336 TICAGQRLCCGEAQCLAWDPSGEYLAVIFKGQ  367 (445)
T ss_pred             hhhcCcccccCccceeeECCCCCEEEEEEcCC
Confidence               11   135788999999999998765443

>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]

Probab=99.61  E-value=1.2e-13  Score=108.53  Aligned_cols=222  Identities=16%  Similarity=0.199  Sum_probs=150.0

Q ss_pred             EEEeecCCCCCcEEEEeeCCCcEEEEcCCCCcceeeccccccceEEEEeCCCCCEEE-EeeCCCeEEEEECCCCceeEEe
Q 021247           20 VTWVPATETRPALLLTGSLDETVKLWRPDDMQLERTNTGHCLGVVSVAAHPSGIIAA-SASLDSFVRVFDVDTNASIATL   98 (315)
Q Consensus        20 v~~~~~~~~~~~~l~sgs~d~~v~~w~~~~~~~~~~~~~h~~~v~~~~~~~~g~~l~-s~~~d~~i~~w~~~~~~~~~~~   98 (315)
                      ..|+|.++    ++|+.+.- .+.+-|.++.++...+.. -..|..+-+..+..+++ .+..|+.|.+|++...+--..+
T Consensus        14 c~fSp~g~----yiAs~~~y-rlviRd~~tlq~~qlf~c-ldki~yieW~ads~~ilC~~yk~~~vqvwsl~Qpew~ckI   87 (447)
T KOG4497|consen   14 CSFSPCGN----YIASLSRY-RLVIRDSETLQLHQLFLC-LDKIVYIEWKADSCHILCVAYKDPKVQVWSLVQPEWYCKI   87 (447)
T ss_pred             eeECCCCC----eeeeeeee-EEEEeccchhhHHHHHHH-HHHhhheeeeccceeeeeeeeccceEEEEEeecceeEEEe
Confidence            46888876    68887754 777788777765443321 23566677777765554 5678889999999988888888


Q ss_pred             eCCcccEEEEEECCCCCeEEEEecCCCeEEEEecCCcceeeeecCCCCCCCCCCccCCCCcceEEEEECCCCCEEEEecC
Q 021247           99 EASPSEVWQMQFDPKGTTLAVAGGGSASVKLWDTATWNLIATLSIPRPEGLKPTDKSSSKKFVLSVAWSPDGRRIACGSM  178 (315)
Q Consensus        99 ~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~s~  178 (315)
                      +.....+..++|+|+|+.++.+..-+..|.+|.+.+.+... +  +.+           +.-+..++|+|+|++.+..+.
T Consensus        88 deg~agls~~~WSPdgrhiL~tseF~lriTVWSL~t~~~~~-~--~~p-----------K~~~kg~~f~~dg~f~ai~sR  153 (447)
T KOG4497|consen   88 DEGQAGLSSISWSPDGRHILLTSEFDLRITVWSLNTQKGYL-L--PHP-----------KTNVKGYAFHPDGQFCAILSR  153 (447)
T ss_pred             ccCCCcceeeeECCCcceEeeeecceeEEEEEEeccceeEE-e--ccc-----------ccCceeEEECCCCceeeeeec
Confidence            88889999999999999999998899999999998744332 1  111           122578999999998887754


Q ss_pred             CCcEEEEEcc---cceeeeeecCCccceEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCeeEEEeecccccEEEEEEcCCC
Q 021247          179 DGTISVFDVT---RAKFLHHLEGHFMPVRSLVYSPVDPRVLFSASDDTHVHMYDAEGKSLVTAMSGHASWVLSVDASPDG  255 (315)
Q Consensus       179 dg~i~i~d~~---~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~i~~~~~~~~~  255 (315)
                      ---.-.+++.   .-..+..+...+...+.+.|+|+ +.         .+.+||.--...+..+. -.-.+..++|+|-+
T Consensus       154 rDCkdyv~i~~c~~W~ll~~f~~dT~DltgieWsPd-g~---------~laVwd~~Leykv~aYe-~~lG~k~v~wsP~~  222 (447)
T KOG4497|consen  154 RDCKDYVQISSCKAWILLKEFKLDTIDLTGIEWSPD-GN---------WLAVWDNVLEYKVYAYE-RGLGLKFVEWSPCN  222 (447)
T ss_pred             ccHHHHHHHHhhHHHHHHHhcCCCcccccCceECCC-Cc---------EEEEecchhhheeeeee-eccceeEEEecccc
Confidence            3211111111   11122333444455678899994 33         45567643221111111 12457789999999


Q ss_pred             CeEEEEeCCCcEEEEec
Q 021247          256 AAITTGSSDRTVKLWDL  272 (315)
Q Consensus       256 ~~l~s~~~d~~i~iwd~  272 (315)
                      ++|+.|+.|+.+|+-+-
T Consensus       223 qflavGsyD~~lrvlnh  239 (447)
T KOG4497|consen  223 QFLAVGSYDQMLRVLNH  239 (447)
T ss_pred             ceEEeeccchhhhhhce
Confidence            99999999999988653

>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3

Probab=99.60  E-value=6e-11  Score=100.29  Aligned_cols=260  Identities=19%  Similarity=0.246  Sum_probs=162.7

Q ss_pred             EEEEEeecCCCCCcEEEEeeC----CCcEEEEcCCCC--ccee--eccccccceEEEEeCCCCCEEEEee-CCCeEEEEE
Q 021247           18 WAVTWVPATETRPALLLTGSL----DETVKLWRPDDM--QLER--TNTGHCLGVVSVAAHPSGIIAASAS-LDSFVRVFD   88 (315)
Q Consensus        18 ~~v~~~~~~~~~~~~l~sgs~----d~~v~~w~~~~~--~~~~--~~~~h~~~v~~~~~~~~g~~l~s~~-~d~~i~~w~   88 (315)
                      .-++++|..    .+|++...    ++.|..|..+..  ++..  ...........++++|++.+++++. .++.+.+++
T Consensus        40 s~l~~~~~~----~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~~~~~~g~~p~~i~~~~~g~~l~vany~~g~v~v~~  115 (345)
T PF10282_consen   40 SWLAVSPDG----RRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLNSVPSGGSSPCHIAVDPDGRFLYVANYGGGSVSVFP  115 (345)
T ss_dssp             CCEEE-TTS----SEEEEEETTSSTTTEEEEEEEETTTTEEEEEEEEEESSSCEEEEEECTTSSEEEEEETTTTEEEEEE
T ss_pred             ceEEEEeCC----CEEEEEEccccCCCCEEEEEECCCcceeEEeeeeccCCCCcEEEEEecCCCEEEEEEccCCeEEEEE
Confidence            345555544    36777765    568888876543  3322  2222234567899999999888775 589999999


Q ss_pred             CCCCceeEE----ee----------CCcccEEEEEECCCCCeEEEEecCCCeEEEEecCCcc--ee--eeecCCCCCCCC
Q 021247           89 VDTNASIAT----LE----------ASPSEVWQMQFDPKGTTLAVAGGGSASVKLWDTATWN--LI--ATLSIPRPEGLK  150 (315)
Q Consensus        89 ~~~~~~~~~----~~----------~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~~d~~~~~--~~--~~~~~~~~~~~~  150 (315)
                      +.....+..    +.          ......-.+.++|++++++++..+...|.+|++....  +.  ..+..+..    
T Consensus       116 l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v~dlG~D~v~~~~~~~~~~~l~~~~~~~~~~G----  191 (345)
T PF10282_consen  116 LDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYVPDLGADRVYVYDIDDDTGKLTPVDSIKVPPG----  191 (345)
T ss_dssp             ECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEEEETTTTEEEEEEE-TTS-TEEEEEEEECSTT----
T ss_pred             ccCCcccceeeeecccCCCCCcccccccccceeEEECCCCCEEEEEecCCCEEEEEEEeCCCceEEEeeccccccC----
Confidence            987432221    21          1224567899999999998888778899999987644  32  22222221    


Q ss_pred             CCccCCCCcceEEEEECCCCCEEEE-ecCCCcEEEEEcc--ccee--eeeecC------CccceEEEEEcCCCCcEEEEE
Q 021247          151 PTDKSSSKKFVLSVAWSPDGRRIAC-GSMDGTISVFDVT--RAKF--LHHLEG------HFMPVRSLVYSPVDPRVLFSA  219 (315)
Q Consensus       151 ~~~~~~~~~~i~~~~~~~~~~~l~~-~s~dg~i~i~d~~--~~~~--~~~~~~------~~~~v~~~~~~~~~~~~l~s~  219 (315)
                              ...+.++|+|+++++.+ .-.++.|.++++.  .+..  ++.+..      .......+.++|++..++++.
T Consensus       192 --------~GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~ispdg~~lyvsn  263 (345)
T PF10282_consen  192 --------SGPRHLAFSPDGKYAYVVNELSNTVSVFDYDPSDGSLTEIQTISTLPEGFTGENAPAEIAISPDGRFLYVSN  263 (345)
T ss_dssp             --------SSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESCETTSCSSSSEEEEEE-TTSSEEEEEE
T ss_pred             --------CCCcEEEEcCCcCEEEEecCCCCcEEEEeecccCCceeEEEEeeeccccccccCCceeEEEecCCCEEEEEe
Confidence                    22678999999998754 5568889999987  4332  222221      112567899999655555666


Q ss_pred             eCCCeEEEEeCC--CCe--eEEEeecccccEEEEEEcCCCCeEEEEe-CCCcEEEEecC--ccceehccc-ccccceEEE
Q 021247          220 SDDTHVHMYDAE--GKS--LVTAMSGHASWVLSVDASPDGAAITTGS-SDRTVKLWDLN--MRAAMQSMT-NHTDQVWGV  291 (315)
Q Consensus       220 ~~d~~i~~wd~~--~~~--~~~~~~~~~~~i~~~~~~~~~~~l~s~~-~d~~i~iwd~~--~~~~~~~~~-~~~~~v~~~  291 (315)
                      .....|.+|++.  +++  .+............++++|+|++|+++. .++.|.+|+++  ++....... ..-....+|
T Consensus       264 r~~~sI~vf~~d~~~g~l~~~~~~~~~G~~Pr~~~~s~~g~~l~Va~~~s~~v~vf~~d~~tG~l~~~~~~~~~~~p~ci  343 (345)
T PF10282_consen  264 RGSNSISVFDLDPATGTLTLVQTVPTGGKFPRHFAFSPDGRYLYVANQDSNTVSVFDIDPDTGKLTPVGSSVPIPSPVCI  343 (345)
T ss_dssp             CTTTEEEEEEECTTTTTEEEEEEEEESSSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEEESSSEEEE
T ss_pred             ccCCEEEEEEEecCCCceEEEEEEeCCCCCccEEEEeCCCCEEEEEecCCCeEEEEEEeCCCCcEEEecccccCCCCEEE
Confidence            678899999983  233  3334444445689999999999988776 55689999774  444332221 122445566


Q ss_pred             EE
Q 021247          292 SF  293 (315)
Q Consensus       292 ~~  293 (315)
                      .|
T Consensus       344 ~f  345 (345)
T PF10282_consen  344 VF  345 (345)
T ss_dssp             EE
T ss_pred             eC
Confidence            55

1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.

>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]

Probab=99.60  E-value=4.6e-13  Score=105.90  Aligned_cols=247  Identities=18%  Similarity=0.278  Sum_probs=170.8

Q ss_pred             hhhhhhccccceEEEEEeecCCCCCcEEEEeeCCCcEEEEcCCCCcceeeccccc--cceEEEEeCCCCCEEEEeeCCCe
Q 021247            6 LKSVENAHEESVWAVTWVPATETRPALLLTGSLDETVKLWRPDDMQLERTNTGHC--LGVVSVAAHPSGIIAASASLDSF   83 (315)
Q Consensus         6 ~~~~~~~h~~~v~~v~~~~~~~~~~~~l~sgs~d~~v~~w~~~~~~~~~~~~~h~--~~v~~~~~~~~g~~l~s~~~d~~   83 (315)
                      +.+..+||.+.|++..-.|..+    -+++.+.|.++++|--.+.........|.  .++.++.+.+....|+.+-..|+
T Consensus        16 ll~~~eG~~d~vn~~~l~~~e~----gv~~~s~drtvrv~lkrds~q~wpsI~~~mP~~~~~~~y~~e~~~L~vg~~ngt   91 (404)
T KOG1409|consen   16 LLSKIEGSQDDVNAAILIPKEE----GVISVSEDRTVRVWLKRDSGQYWPSIYHYMPSPCSAMEYVSESRRLYVGQDNGT   91 (404)
T ss_pred             hhhhhcCchhhhhhheeccCCC----CeEEccccceeeeEEeccccccCchhhhhCCCCceEeeeeccceEEEEEEecce
Confidence            3445689999999999888766    39999999999999533222212212233  46888999999999999999999


Q ss_pred             EEEEECCCC----ceeEEeeCCcccEEEEEECCCCCeEEEEecCCCeEEEEecCCcceeeeecCCCCCCCCCCccCCCCc
Q 021247           84 VRVFDVDTN----ASIATLEASPSEVWQMQFDPKGTTLAVAGGGSASVKLWDTATWNLIATLSIPRPEGLKPTDKSSSKK  159 (315)
Q Consensus        84 i~~w~~~~~----~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~  159 (315)
                      +.-+.+...    ..++....|...+..+-|+.....+ ++.+.|..+.---.+.++.+..+....+.            
T Consensus        92 vtefs~sedfnkm~~~r~~~~h~~~v~~~if~~~~e~V-~s~~~dk~~~~hc~e~~~~lg~Y~~~~~~------------  158 (404)
T KOG1409|consen   92 VTEFALSEDFNKMTFLKDYLAHQARVSAIVFSLTHEWV-LSTGKDKQFAWHCTESGNRLGGYNFETPA------------  158 (404)
T ss_pred             EEEEEhhhhhhhcchhhhhhhhhcceeeEEecCCceeE-EEeccccceEEEeeccCCcccceEeeccC------------
Confidence            887766432    2334455677888888887665544 55666655543333333333222211110            


Q ss_pred             ceEEEEECCCCCEEEEecCCCcEEEEEc--ccceeeeeecCCccceEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCe-eE
Q 021247          160 FVLSVAWSPDGRRIACGSMDGTISVFDV--TRAKFLHHLEGHFMPVRSLVYSPVDPRVLFSASDDTHVHMYDAEGKS-LV  236 (315)
Q Consensus       160 ~i~~~~~~~~~~~l~~~s~dg~i~i~d~--~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~-~~  236 (315)
                        +.+.+.-  .+...|-..|.|-+-.+  .....+..+.+|..++.+.+|.| .+++|++|..|..+.+||+-.++ ..
T Consensus       159 --t~~~~d~--~~~fvGd~~gqvt~lr~~~~~~~~i~~~~~h~~~~~~l~Wd~-~~~~LfSg~~d~~vi~wdigg~~g~~  233 (404)
T KOG1409|consen  159 --SALQFDA--LYAFVGDHSGQITMLKLEQNGCQLITTFNGHTGEVTCLKWDP-GQRLLFSGASDHSVIMWDIGGRKGTA  233 (404)
T ss_pred             --CCCceee--EEEEecccccceEEEEEeecCCceEEEEcCcccceEEEEEcC-CCcEEEeccccCceEEEeccCCccee
Confidence              0011110  13445555566555444  34456788999999999999998 67899999999999999987654 34


Q ss_pred             EEeecccccEEEEEEcCCCCeEEEEeCCCcEEEEecCc
Q 021247          237 TAMSGHASWVLSVDASPDGAAITTGSSDRTVKLWDLNM  274 (315)
Q Consensus       237 ~~~~~~~~~i~~~~~~~~~~~l~s~~~d~~i~iwd~~~  274 (315)
                      ..+.+|...+..+..-+.-+.+.+++.||.|.+|+.+.
T Consensus       234 ~el~gh~~kV~~l~~~~~t~~l~S~~edg~i~~w~mn~  271 (404)
T KOG1409|consen  234 YELQGHNDKVQALSYAQHTRQLISCGEDGGIVVWNMNV  271 (404)
T ss_pred             eeeccchhhhhhhhhhhhheeeeeccCCCeEEEEeccc
Confidence            56788999998888877778899999999999999864

>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A

Probab=99.60  E-value=5.4e-13  Score=112.70  Aligned_cols=255  Identities=19%  Similarity=0.207  Sum_probs=150.3

Q ss_pred             EEEEeecCCCCCcEEEEeeCCCcEEEEcCCCCcceeeccccccceEEEEeCCCCCEEEEe-eCCCeEEEEECCCCceeEE
Q 021247           19 AVTWVPATETRPALLLTGSLDETVKLWRPDDMQLERTNTGHCLGVVSVAAHPSGIIAASA-SLDSFVRVFDVDTNASIAT   97 (315)
Q Consensus        19 ~v~~~~~~~~~~~~l~sgs~d~~v~~w~~~~~~~~~~~~~h~~~v~~~~~~~~g~~l~s~-~~d~~i~~w~~~~~~~~~~   97 (315)
                      .+.|+|+++    ++++++.||.|.++|+.+.+..+.++. ......++++++|++++++ ...+.+.++|.++.+.+..
T Consensus        41 ~~~~s~Dgr----~~yv~~rdg~vsviD~~~~~~v~~i~~-G~~~~~i~~s~DG~~~~v~n~~~~~v~v~D~~tle~v~~  115 (369)
T PF02239_consen   41 GLKFSPDGR----YLYVANRDGTVSVIDLATGKVVATIKV-GGNPRGIAVSPDGKYVYVANYEPGTVSVIDAETLEPVKT  115 (369)
T ss_dssp             EEE-TT-SS----EEEEEETTSEEEEEETTSSSEEEEEE--SSEEEEEEE--TTTEEEEEEEETTEEEEEETTT--EEEE
T ss_pred             EEEecCCCC----EEEEEcCCCeEEEEECCcccEEEEEec-CCCcceEEEcCCCCEEEEEecCCCceeEeccccccceee
Confidence            356777665    688889999999999999998877653 3356789999999988765 5689999999988766554


Q ss_pred             eeCC------------------c-----------cc----------------------EEEEEECCCCCeEEEEecCCCe
Q 021247           98 LEAS------------------P-----------SE----------------------VWQMQFDPKGTTLAVAGGGSAS  126 (315)
Q Consensus        98 ~~~~------------------~-----------~~----------------------v~~~~~~~~~~~~~~~~~~d~~  126 (315)
                      +...                  .           +.                      .....|+|++++++++......
T Consensus       116 I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVdy~d~~~~~~~~i~~g~~~~D~~~dpdgry~~va~~~sn~  195 (369)
T PF02239_consen  116 IPTGGMPVDGPESRVAAIVASPGRPEFVVNLKDTGEIWVVDYSDPKNLKVTTIKVGRFPHDGGFDPDGRYFLVAANGSNK  195 (369)
T ss_dssp             EE--EE-TTTS---EEEEEE-SSSSEEEEEETTTTEEEEEETTTSSCEEEEEEE--TTEEEEEE-TTSSEEEEEEGGGTE
T ss_pred             cccccccccccCCCceeEEecCCCCEEEEEEccCCeEEEEEeccccccceeeecccccccccccCcccceeeecccccce
Confidence            3211                  0           11                      1223456667777666666677


Q ss_pred             EEEEecCCcceeeeecCCCCCCCCCCccCCCCcceEEEEECC--CCCEEEEecCCCcEEEEEcccceeeeeecCCccceE
Q 021247          127 VKLWDTATWNLIATLSIPRPEGLKPTDKSSSKKFVLSVAWSP--DGRRIACGSMDGTISVFDVTRAKFLHHLEGHFMPVR  204 (315)
Q Consensus       127 i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~--~~~~l~~~s~dg~i~i~d~~~~~~~~~~~~~~~~v~  204 (315)
                      |.++|..+++.+..+...+.....+.....|..  ....|..  .+...++.-....+.+||....+.+..+.....+ .
T Consensus       196 i~viD~~~~k~v~~i~~g~~p~~~~~~~~php~--~g~vw~~~~~~~~~~~~ig~~~v~v~d~~~wkvv~~I~~~G~g-l  272 (369)
T PF02239_consen  196 IAVIDTKTGKLVALIDTGKKPHPGPGANFPHPG--FGPVWATSGLGYFAIPLIGTDPVSVHDDYAWKVVKTIPTQGGG-L  272 (369)
T ss_dssp             EEEEETTTTEEEEEEE-SSSBEETTEEEEEETT--TEEEEEEEBSSSSEEEEEE--TTT-STTTBTSEEEEEE-SSSS--
T ss_pred             eEEEeeccceEEEEeeccccccccccccccCCC--cceEEeeccccceecccccCCccccchhhcCeEEEEEECCCCc-c
Confidence            888888777766655332111000000001110  1112221  2233322222335667888888888888876556 6


Q ss_pred             EEEEcCCCCcEEEEE----eCCCeEEEEeCCCCeeEEEeeccc-ccEEEEEEcCCCCeEEEEeCC--CcEEEEecCccce
Q 021247          205 SLVYSPVDPRVLFSA----SDDTHVHMYDAEGKSLVTAMSGHA-SWVLSVDASPDGAAITTGSSD--RTVKLWDLNMRAA  277 (315)
Q Consensus       205 ~~~~~~~~~~~l~s~----~~d~~i~~wd~~~~~~~~~~~~~~-~~i~~~~~~~~~~~l~s~~~d--~~i~iwd~~~~~~  277 (315)
                      -++-+|+ ++++...    .....|.++|.++.+.+..+.... ..+..+.|+++|+.+..+..+  +.|.++|..+.+.
T Consensus       273 Fi~thP~-s~~vwvd~~~~~~~~~v~viD~~tl~~~~~i~~~~~~~~~h~ef~~dG~~v~vS~~~~~~~i~v~D~~Tl~~  351 (369)
T PF02239_consen  273 FIKTHPD-SRYVWVDTFLNPDADTVQVIDKKTLKVVKTITPGPGKRVVHMEFNPDGKEVWVSVWDGNGAIVVYDAKTLKE  351 (369)
T ss_dssp             -EE--TT--SEEEEE-TT-SSHT-EEEEECCGTEEEE-HHHHHT--EEEEEE-TTSSEEEEEEE--TTEEEEEETTTTEE
T ss_pred             eeecCCC-CccEEeeccCCCCCceEEEEECcCcceeEEEeccCCCcEeccEECCCCCEEEEEEecCCCEEEEEECCCcEE
Confidence            7778984 5555555    456899999999987777665332 358899999999966544443  3699999999888


Q ss_pred             ehccc
Q 021247          278 MQSMT  282 (315)
Q Consensus       278 ~~~~~  282 (315)
                      +++++
T Consensus       352 ~~~i~  356 (369)
T PF02239_consen  352 KKRIP  356 (369)
T ss_dssp             EEEEE
T ss_pred             EEEEE
Confidence            87765

...

>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]

Probab=99.59  E-value=2.4e-13  Score=107.53  Aligned_cols=271  Identities=17%  Similarity=0.214  Sum_probs=175.7

Q ss_pred             cccceEEEEEeecCCCCCcEEEEeeCCCcEEEEcCCCCc-----ceeeccccc------------cceEEEEeCCCC--C
Q 021247           13 HEESVWAVTWVPATETRPALLLTGSLDETVKLWRPDDMQ-----LERTNTGHC------------LGVVSVAAHPSG--I   73 (315)
Q Consensus        13 h~~~v~~v~~~~~~~~~~~~l~sgs~d~~v~~w~~~~~~-----~~~~~~~h~------------~~v~~~~~~~~g--~   73 (315)
                      -.+-+.+|.|...+.    +|+||..+|.|.++.-+...     ....+..|.            ..|+.+.|.+++  .
T Consensus        24 eadiis~vef~~~Ge----~LatGdkgGRVv~f~r~~~~~~ey~~~t~fqshepEFDYLkSleieEKinkIrw~~~~n~a   99 (433)
T KOG1354|consen   24 EADIISAVEFDHYGE----RLATGDKGGRVVLFEREKLYKGEYNFQTEFQSHEPEFDYLKSLEIEEKINKIRWLDDGNLA   99 (433)
T ss_pred             hhcceeeEEeecccc----eEeecCCCCeEEEeecccccccceeeeeeeeccCcccchhhhhhhhhhhhhceecCCCCcc
Confidence            356789999998886    69999999999999643211     112222232            357788888766  4


Q ss_pred             EEEEeeCCCeEEEEECCCCceeE-E----eeCCcccEEEEEECCCCCeEEEEecCCCeEEEEecCCcceeeeecCCCCCC
Q 021247           74 IAASASLDSFVRVFDVDTNASIA-T----LEASPSEVWQMQFDPKGTTLAVAGGGSASVKLWDTATWNLIATLSIPRPEG  148 (315)
Q Consensus        74 ~l~s~~~d~~i~~w~~~~~~~~~-~----~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~  148 (315)
                      .++....|++|++|.+....... .    -+..+..+..++                   +=-+..........      
T Consensus       100 ~FLlstNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr-------------------~p~~~~~~~~vea~------  154 (433)
T KOG1354|consen  100 EFLLSTNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLR-------------------LPVEGRHDLEVEAS------  154 (433)
T ss_pred             EEEEecCCcceeeeeeeccccccccccccccCCCCccceee-------------------ceeeccccceeeee------
Confidence            66677889999999986543211 0    001111122211                   11111100000000      


Q ss_pred             CCCCccCCCCcceEEEEECCCCCEEEEecCCCcEEEEEccccee---eeeecCCc-----cceEEEEEcCCCCcEEEEEe
Q 021247          149 LKPTDKSSSKKFVLSVAWSPDGRRIACGSMDGTISVFDVTRAKF---LHHLEGHF-----MPVRSLVYSPVDPRVLFSAS  220 (315)
Q Consensus       149 ~~~~~~~~~~~~i~~~~~~~~~~~l~~~s~dg~i~i~d~~~~~~---~~~~~~~~-----~~v~~~~~~~~~~~~l~s~~  220 (315)
                      ....-...|...|+++.++.|.+.++++ .|=+|.+|.++--..   +..++.++     ..|++..|+|....+++=++
T Consensus       155 prRv~aNaHtyhiNSIS~NsD~Et~lSA-DdLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSS  233 (433)
T KOG1354|consen  155 PRRVYANAHTYHINSISVNSDKETFLSA-DDLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSS  233 (433)
T ss_pred             eeeeccccceeEeeeeeecCccceEeec-cceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHccEEEEec
Confidence            0111234567789999999999988876 677899999863221   23334443     35788999999899999999


Q ss_pred             CCCeEEEEeCCCCeeE-------EE---------eecccccEEEEEEcCCCCeEEEEeCCCcEEEEecCc-cceehcccc
Q 021247          221 DDTHVHMYDAEGKSLV-------TA---------MSGHASWVLSVDASPDGAAITTGSSDRTVKLWDLNM-RAAMQSMTN  283 (315)
Q Consensus       221 ~d~~i~~wd~~~~~~~-------~~---------~~~~~~~i~~~~~~~~~~~l~s~~~d~~i~iwd~~~-~~~~~~~~~  283 (315)
                      ..|+|++.|++...+-       ..         +.+--..|.++.|+++|+++++=.. -+|++||++. .+++.+++-
T Consensus       234 SKGtIrLcDmR~~aLCd~hsKlfEepedp~~rsffseiIsSISDvKFs~sGryilsRDy-ltvk~wD~nme~~pv~t~~v  312 (433)
T KOG1354|consen  234 SKGTIRLCDMRQSALCDAHSKLFEEPEDPSSRSFFSEIISSISDVKFSHSGRYILSRDY-LTVKLWDLNMEAKPVETYPV  312 (433)
T ss_pred             CCCcEEEeechhhhhhcchhhhhccccCCcchhhHHHHhhhhhceEEccCCcEEEEecc-ceeEEEeccccCCcceEEee
Confidence            9999999999843211       00         1111345778999999999986443 5799999964 455655544


Q ss_pred             cc------------cce---EEEEEeeCCCEEEEEeCCCcEEEeec
Q 021247          284 HT------------DQV---WGVSFRPLGGRVVSVSDDKSISLYEY  314 (315)
Q Consensus       284 ~~------------~~v---~~~~~s~~~~~l~s~~~d~~i~i~~~  314 (315)
                      |.            +.|   ..++|+-++.++++|+....+++|+.
T Consensus       313 h~~lr~kLc~lYEnD~IfdKFec~~sg~~~~v~TGsy~n~frvf~~  358 (433)
T KOG1354|consen  313 HEYLRSKLCSLYENDAIFDKFECSWSGNDSYVMTGSYNNVFRVFNL  358 (433)
T ss_pred             hHhHHHHHHHHhhccchhheeEEEEcCCcceEecccccceEEEecC
Confidence            42            333   35899999999999999999999973

>PRK00178 tolB translocation protein TolB; Provisional

Probab=99.56  E-value=5.6e-12  Score=110.14  Aligned_cols=236  Identities=17%  Similarity=0.131  Sum_probs=144.5

Q ss_pred             cEEEEcCCCCcceeeccccccceEEEEeCCCCCEEEEeeCC---CeEEEEECCCCceeEEeeCCcccEEEEEECCCCCeE
Q 021247           41 TVKLWRPDDMQLERTNTGHCLGVVSVAAHPSGIIAASASLD---SFVRVFDVDTNASIATLEASPSEVWQMQFDPKGTTL  117 (315)
Q Consensus        41 ~v~~w~~~~~~~~~~~~~h~~~v~~~~~~~~g~~l~s~~~d---~~i~~w~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~  117 (315)
                      .|.++|.+.... +.+..+...+....|+|+|+.|+..+.+   ..|.+|++.+++... +......+....|+|+|+.+
T Consensus       180 ~l~~~d~~g~~~-~~l~~~~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~~-l~~~~g~~~~~~~SpDG~~l  257 (430)
T PRK00178        180 TLQRSDYDGARA-VTLLQSREPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRREQ-ITNFEGLNGAPAWSPDGSKL  257 (430)
T ss_pred             EEEEECCCCCCc-eEEecCCCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEEE-ccCCCCCcCCeEECCCCCEE
Confidence            467777765443 4444566778999999999988766543   369999998876533 22233445568899999988


Q ss_pred             EEEecCCC--eEEEEecCCcceeeeecCCCCCCCCCCccCCCCcceEEEEECCCCCEEEEecC-CC--cEEEEEccccee
Q 021247          118 AVAGGGSA--SVKLWDTATWNLIATLSIPRPEGLKPTDKSSSKKFVLSVAWSPDGRRIACGSM-DG--TISVFDVTRAKF  192 (315)
Q Consensus       118 ~~~~~~d~--~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~s~-dg--~i~i~d~~~~~~  192 (315)
                      +++...++  .|.+||+.+++... +..             +........|+|+|+.++..+. ++  .|+++|+.+++.
T Consensus       258 a~~~~~~g~~~Iy~~d~~~~~~~~-lt~-------------~~~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~g~~  323 (430)
T PRK00178        258 AFVLSKDGNPEIYVMDLASRQLSR-VTN-------------HPAIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVNGGRA  323 (430)
T ss_pred             EEEEccCCCceEEEEECCCCCeEE-ccc-------------CCCCcCCeEECCCCCEEEEEECCCCCceEEEEECCCCCE
Confidence            77665544  68888988765432 110             1112345789999998876553 33  577788876654


Q ss_pred             eeeecCCccceEEEEEcCCCCcEEEEEeCCC--eEEEEeCCCCeeEEEeecccccEEEEEEcCCCCeEEEEeCC-C--cE
Q 021247          193 LHHLEGHFMPVRSLVYSPVDPRVLFSASDDT--HVHMYDAEGKSLVTAMSGHASWVLSVDASPDGAAITTGSSD-R--TV  267 (315)
Q Consensus       193 ~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~--~i~~wd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~d-~--~i  267 (315)
                      .. +...........|+|++..++++...++  .|.++|+.++........  .......|+|+|+.++..+.+ +  .+
T Consensus       324 ~~-lt~~~~~~~~~~~Spdg~~i~~~~~~~~~~~l~~~dl~tg~~~~lt~~--~~~~~p~~spdg~~i~~~~~~~g~~~l  400 (430)
T PRK00178        324 ER-VTFVGNYNARPRLSADGKTLVMVHRQDGNFHVAAQDLQRGSVRILTDT--SLDESPSVAPNGTMLIYATRQQGRGVL  400 (430)
T ss_pred             EE-eecCCCCccceEECCCCCEEEEEEccCCceEEEEEECCCCCEEEccCC--CCCCCceECCCCCEEEEEEecCCceEE
Confidence            32 2211122335679985544444443343  588899887654322221  122345899999988665543 3  46


Q ss_pred             EEEecCccceehcccccccceEEEEEeeC
Q 021247          268 KLWDLNMRAAMQSMTNHTDQVWGVSFRPL  296 (315)
Q Consensus       268 ~iwd~~~~~~~~~~~~~~~~v~~~~~s~~  296 (315)
                      .+.+++. .....+..+.+.+...+|+|.
T Consensus       401 ~~~~~~g-~~~~~l~~~~g~~~~p~ws~~  428 (430)
T PRK00178        401 MLVSING-RVRLPLPTAQGEVREPSWSPY  428 (430)
T ss_pred             EEEECCC-CceEECcCCCCCcCCCccCCC
Confidence            6667753 333334444456677778774

>PRK04792 tolB translocation protein TolB; Provisional

Probab=99.56  E-value=6.4e-12  Score=109.66  Aligned_cols=236  Identities=16%  Similarity=0.177  Sum_probs=142.1

Q ss_pred             cEEEEcCCCCcceeeccccccceEEEEeCCCCCEEEEeeCC---CeEEEEECCCCceeEEeeCCcccEEEEEECCCCCeE
Q 021247           41 TVKLWRPDDMQLERTNTGHCLGVVSVAAHPSGIIAASASLD---SFVRVFDVDTNASIATLEASPSEVWQMQFDPKGTTL  117 (315)
Q Consensus        41 ~v~~w~~~~~~~~~~~~~h~~~v~~~~~~~~g~~l~s~~~d---~~i~~w~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~  117 (315)
                      .+.++|.+.... +.+..+...+.+..|+|+|+.++-.+.+   ..|++||+.+++... +...........|+|+++.+
T Consensus       199 ~l~i~d~dG~~~-~~l~~~~~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~~-lt~~~g~~~~~~wSPDG~~L  276 (448)
T PRK04792        199 QLMIADYDGYNE-QMLLRSPEPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVREK-VTSFPGINGAPRFSPDGKKL  276 (448)
T ss_pred             EEEEEeCCCCCc-eEeecCCCcccCceECCCCCEEEEEEecCCCcEEEEEECCCCCeEE-ecCCCCCcCCeeECCCCCEE
Confidence            566667654433 3334455678889999999988765433   358899998876432 22223334467899999988


Q ss_pred             EEEecCCCe--EEEEecCCcceeeeecCCCCCCCCCCccCCCCcceEEEEECCCCCEEEEecC-CC--cEEEEEccccee
Q 021247          118 AVAGGGSAS--VKLWDTATWNLIATLSIPRPEGLKPTDKSSSKKFVLSVAWSPDGRRIACGSM-DG--TISVFDVTRAKF  192 (315)
Q Consensus       118 ~~~~~~d~~--i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~s~-dg--~i~i~d~~~~~~  192 (315)
                      +++...++.  |.++|+.+++... +..             +.......+|+|+|+.++..+. ++  .|+++|+.+++.
T Consensus       277 a~~~~~~g~~~Iy~~dl~tg~~~~-lt~-------------~~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g~~  342 (448)
T PRK04792        277 ALVLSKDGQPEIYVVDIATKALTR-ITR-------------HRAIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLASGKV  342 (448)
T ss_pred             EEEEeCCCCeEEEEEECCCCCeEE-Ccc-------------CCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCE
Confidence            877666664  7777887654322 111             1112456789999998876543 33  477778876654


Q ss_pred             eeeecCCccceEEEEEcCCCCcEEEEEeCCC--eEEEEeCCCCeeEEEeecccccEEEEEEcCCCCeEEEEeC-CCc--E
Q 021247          193 LHHLEGHFMPVRSLVYSPVDPRVLFSASDDT--HVHMYDAEGKSLVTAMSGHASWVLSVDASPDGAAITTGSS-DRT--V  267 (315)
Q Consensus       193 ~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~--~i~~wd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~-d~~--i  267 (315)
                      .. +...........|+|++..++++...++  .|.++|+.++.... +... .......|+|+|+.|+..+. ++.  +
T Consensus       343 ~~-Lt~~g~~~~~~~~SpDG~~l~~~~~~~g~~~I~~~dl~~g~~~~-lt~~-~~d~~ps~spdG~~I~~~~~~~g~~~l  419 (448)
T PRK04792        343 SR-LTFEGEQNLGGSITPDGRSMIMVNRTNGKFNIARQDLETGAMQV-LTST-RLDESPSVAPNGTMVIYSTTYQGKQVL  419 (448)
T ss_pred             EE-EecCCCCCcCeeECCCCCEEEEEEecCCceEEEEEECCCCCeEE-ccCC-CCCCCceECCCCCEEEEEEecCCceEE
Confidence            32 2211122334689996554445444444  46667877765432 2221 12224579999997765544 343  6


Q ss_pred             EEEecCccceehcccccccceEEEEEeeC
Q 021247          268 KLWDLNMRAAMQSMTNHTDQVWGVSFRPL  296 (315)
Q Consensus       268 ~iwd~~~~~~~~~~~~~~~~v~~~~~s~~  296 (315)
                      .+++.+ ++....+..+.+.+...+|+|-
T Consensus       420 ~~~~~~-G~~~~~l~~~~g~~~~p~Wsp~  447 (448)
T PRK04792        420 AAVSID-GRFKARLPAGQGEVKSPAWSPF  447 (448)
T ss_pred             EEEECC-CCceEECcCCCCCcCCCccCCC
Confidence            666764 4444445555566777788873

>KOG4190 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.56  E-value=3.4e-14  Score=119.05  Aligned_cols=283  Identities=15%  Similarity=0.192  Sum_probs=188.6

Q ss_pred             hccccceEEEEEeecCCCCCcEEEEeeCCCcEEEEcCCC-------CcceeeccccccceEEEEeCCCCCEEEEeeCCCe
Q 021247           11 NAHEESVWAVTWVPATETRPALLLTGSLDETVKLWRPDD-------MQLERTNTGHCLGVVSVAAHPSGIIAASASLDSF   83 (315)
Q Consensus        11 ~~h~~~v~~v~~~~~~~~~~~~l~sgs~d~~v~~w~~~~-------~~~~~~~~~h~~~v~~~~~~~~g~~l~s~~~d~~   83 (315)
                      .+|++.|-+++-....+    -++++|.|.+|++|....       .-+..+...|+.+|.++-|-.+-.++++  .|+.
T Consensus       732 ~GH~~~iRai~AidNEN----SFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL~~lr~i~S--cD~g  805 (1034)
T KOG4190|consen  732 TGHQEKIRAIAAIDNEN----SFISASKDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFLADLRSIAS--CDGG  805 (1034)
T ss_pred             cCcHHHhHHHHhccccc----ceeeccCCceEEEEEeccccCccccceeeeEhhhccCcccceeeeeccceeee--ccCc
Confidence            58888888877555433    599999999999997532       2245667889999999999988888765  5899


Q ss_pred             EEEEECCCCceeEEeeCC--cccEEEEEECCC--CCeEEEEecCCCeEEEEecCCcceeeeecCCCCCCCCCCccCCCCc
Q 021247           84 VRVFDVDTNASIATLEAS--PSEVWQMQFDPK--GTTLAVAGGGSASVKLWDTATWNLIATLSIPRPEGLKPTDKSSSKK  159 (315)
Q Consensus        84 i~~w~~~~~~~~~~~~~~--~~~v~~~~~~~~--~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~  159 (315)
                      |++||.--+..+......  .+.+..+..-|+  ...+++.++...+|+++|.+..+....+..-...        ....
T Consensus       806 iHlWDPFigr~Laq~~dapk~~a~~~ikcl~nv~~~iliAgcsaeSTVKl~DaRsce~~~E~kVcna~--------~Pna  877 (1034)
T KOG4190|consen  806 IHLWDPFIGRLLAQMEDAPKEGAGGNIKCLENVDRHILIAGCSAESTVKLFDARSCEWTCELKVCNAP--------GPNA  877 (1034)
T ss_pred             ceeecccccchhHhhhcCcccCCCceeEecccCcchheeeeccchhhheeeecccccceeeEEeccCC--------CCch
Confidence            999998777655432211  122222222232  3334444477899999999998877766543221        2234


Q ss_pred             ceEEEEECCCCCEEEEecCCCcEEEEEcccceeeeeecCCccceEEEEEcCCCCcEEEEEeCCCeEEE-EeCCCCeeEEE
Q 021247          160 FVLSVAWSPDGRRIACGSMDGTISVFDVTRAKFLHHLEGHFMPVRSLVYSPVDPRVLFSASDDTHVHM-YDAEGKSLVTA  238 (315)
Q Consensus       160 ~i~~~~~~~~~~~l~~~s~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~~-wd~~~~~~~~~  238 (315)
                      .+++++..+.|++++++-.+|.|.+.|.++++.+..++..+.....++ .| .++.|+....|.++.+ |....+....+
T Consensus       878 ~~R~iaVa~~GN~lAa~LSnGci~~LDaR~G~vINswrpmecdllqla-ap-sdq~L~~saldHslaVnWhaldgimh~q  955 (1034)
T KOG4190|consen  878 LTRAIAVADKGNKLAAALSNGCIAILDARNGKVINSWRPMECDLLQLA-AP-SDQALAQSALDHSLAVNWHALDGIMHLQ  955 (1034)
T ss_pred             heeEEEeccCcchhhHHhcCCcEEEEecCCCceeccCCcccchhhhhc-Cc-hhHHHHhhcccceeEeeehhcCCeeeec
Confidence            588999999999999999999999999999999887765443333332 23 4557777788888888 87665543333


Q ss_pred             eecccccEEEEEEcCCCCeEEEEeCCCcEEEEecC-ccceehc---c--cccccceEEEEEeeCCCEEEEEeCCCcEEE
Q 021247          239 MSGHASWVLSVDASPDGAAITTGSSDRTVKLWDLN-MRAAMQS---M--TNHTDQVWGVSFRPLGGRVVSVSDDKSISL  311 (315)
Q Consensus       239 ~~~~~~~i~~~~~~~~~~~l~s~~~d~~i~iwd~~-~~~~~~~---~--~~~~~~v~~~~~s~~~~~l~s~~~d~~i~i  311 (315)
                      ......+.  --...-|..|+++.....+.+|--. ......+   +  ..-.+..++++--|-+.-++.|...|.|.+
T Consensus       956 ~kpppepa--hflqsvgpSLV~a~~Gn~lgVYad~a~~ha~stitKiR~d~f~G~lTala~LPLN~afLaGne~G~IaL 1032 (1034)
T KOG4190|consen  956 DKPPPEPA--HFLQSVGPSLVTAQNGNILGVYADSAELHAESTITKIRPDEFPGTLTALAPLPLNCAFLAGNEHGAIAL 1032 (1034)
T ss_pred             cCCCCcch--hhhhccCceeEEeccCcEEEEEecchhhhhhhhhccccccccCCccceeeeccccchhhccCCCCceee
Confidence            32211111  1112235568888877788888421 1111111   1  112356788888888888899999999876

>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain

Probab=99.55  E-value=2.1e-10  Score=95.08  Aligned_cols=255  Identities=16%  Similarity=0.170  Sum_probs=161.0

Q ss_pred             CcEEEEcCCCCcceeeccccccceEEEEeCCCCCEEEEeeC----------CCeEEEEECCCCceeEEeeCCcc------
Q 021247           40 ETVKLWRPDDMQLERTNTGHCLGVVSVAAHPSGIIAASASL----------DSFVRVFDVDTNASIATLEASPS------  103 (315)
Q Consensus        40 ~~v~~w~~~~~~~~~~~~~h~~~v~~~~~~~~g~~l~s~~~----------d~~i~~w~~~~~~~~~~~~~~~~------  103 (315)
                      ++|.+.|.++.+....++.-..+- .+ ++|+|+.+..+..          +..|.+||..+.+.+..+...+.      
T Consensus        27 ~~v~ViD~~~~~v~g~i~~G~~P~-~~-~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i~~p~~p~~~~~  104 (352)
T TIGR02658        27 TQVYTIDGEAGRVLGMTDGGFLPN-PV-VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIADIELPEGPRFLVG  104 (352)
T ss_pred             ceEEEEECCCCEEEEEEEccCCCc-ee-ECCCCCEEEEEeccccccccCCCCCEEEEEECccCcEEeEEccCCCchhhcc
Confidence            899999999988877665322222 24 9999987765544          78999999999999887765333      


Q ss_pred             -cEEEEEECCCCCeEEEEecC-CCeEEEEecCCcceeeeecCCCCCCCCCCccCCCCcceEEEEECCCCCEEEE-ecCCC
Q 021247          104 -EVWQMQFDPKGTTLAVAGGG-SASVKLWDTATWNLIATLSIPRPEGLKPTDKSSSKKFVLSVAWSPDGRRIAC-GSMDG  180 (315)
Q Consensus       104 -~v~~~~~~~~~~~~~~~~~~-d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~-~s~dg  180 (315)
                       ....++++|+|+.++++.-. +..|-+.|+.+.+.+..+..+......+..   .   -..+..+.||..+.. -..+|
T Consensus       105 ~~~~~~~ls~dgk~l~V~n~~p~~~V~VvD~~~~kvv~ei~vp~~~~vy~t~---e---~~~~~~~~Dg~~~~v~~d~~g  178 (352)
T TIGR02658       105 TYPWMTSLTPDNKTLLFYQFSPSPAVGVVDLEGKAFVRMMDVPDCYHIFPTA---N---DTFFMHCRDGSLAKVGYGTKG  178 (352)
T ss_pred             CccceEEECCCCCEEEEecCCCCCEEEEEECCCCcEEEEEeCCCCcEEEEec---C---CccEEEeecCceEEEEecCCC
Confidence             23477899999988877645 899999999999999888664321110000   0   001122233333321 12222


Q ss_pred             cEEEEEcccceeeeeecC-----CccceEEEEEcCCCCcEEEEEeCCCeEEEEeCCCC-----eeEEEeec-------cc
Q 021247          181 TISVFDVTRAKFLHHLEG-----HFMPVRSLVYSPVDPRVLFSASDDTHVHMYDAEGK-----SLVTAMSG-------HA  243 (315)
Q Consensus       181 ~i~i~d~~~~~~~~~~~~-----~~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~-----~~~~~~~~-------~~  243 (315)
                      ....=   + .  ..+..     ...+    .|.+.++.++..... |.|.+.|+.+.     .....+..       ..
T Consensus       179 ~~~~~---~-~--~vf~~~~~~v~~rP----~~~~~dg~~~~vs~e-G~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP  247 (352)
T TIGR02658       179 NPKIK---P-T--EVFHPEDEYLINHP----AYSNKSGRLVWPTYT-GKIFQIDLSSGDAKFLPAIEAFTEAEKADGWRP  247 (352)
T ss_pred             ceEEe---e-e--eeecCCccccccCC----ceEcCCCcEEEEecC-CeEEEEecCCCcceecceeeeccccccccccCC
Confidence            21100   0 0  00111     0112    344535566655555 99999995432     22222111       23


Q ss_pred             ccEEEEEEcCCCCeEEEEe----------CCCcEEEEecCccceehcccccccceEEEEEeeCCC-EEEEEe-CCCcEEE
Q 021247          244 SWVLSVDASPDGAAITTGS----------SDRTVKLWDLNMRAAMQSMTNHTDQVWGVSFRPLGG-RVVSVS-DDKSISL  311 (315)
Q Consensus       244 ~~i~~~~~~~~~~~l~s~~----------~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~-~l~s~~-~d~~i~i  311 (315)
                      +.+.-++++|+++.+....          ..+.|.++|..+++.+..+.. ...+++++++||++ +|+... .++.|.+
T Consensus       248 ~g~q~ia~~~dg~~lyV~~~~~~~~thk~~~~~V~ViD~~t~kvi~~i~v-G~~~~~iavS~Dgkp~lyvtn~~s~~VsV  326 (352)
T TIGR02658       248 GGWQQVAYHRARDRIYLLADQRAKWTHKTASRFLFVVDAKTGKRLRKIEL-GHEIDSINVSQDAKPLLYALSTGDKTLYI  326 (352)
T ss_pred             CcceeEEEcCCCCEEEEEecCCccccccCCCCEEEEEECCCCeEEEEEeC-CCceeeEEECCCCCeEEEEeCCCCCcEEE
Confidence            3344589999988777642          124799999999988887654 45889999999999 777555 6788999


Q ss_pred             eec
Q 021247          312 YEY  314 (315)
Q Consensus       312 ~~~  314 (315)
                      +|.
T Consensus       327 iD~  329 (352)
T TIGR02658       327 FDA  329 (352)
T ss_pred             EEC
Confidence            985

This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.

>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB

Probab=99.55  E-value=8e-12  Score=108.89  Aligned_cols=207  Identities=23%  Similarity=0.252  Sum_probs=135.0

Q ss_pred             CeEEEEECCCCceeEEeeCCcccEEEEEECCCCCeEEEEecCC--CeEEEEecCCcceeeeecCCCCCCCCCCccCCCCc
Q 021247           82 SFVRVFDVDTNASIATLEASPSEVWQMQFDPKGTTLAVAGGGS--ASVKLWDTATWNLIATLSIPRPEGLKPTDKSSSKK  159 (315)
Q Consensus        82 ~~i~~w~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d--~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~  159 (315)
                      ..|.++|..... ...+..+...+...+|+|+++.++++...+  ..|.+||+.+++.......              ..
T Consensus       170 ~~l~~~d~~g~~-~~~l~~~~~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~~~~~~~--------------~~  234 (417)
T TIGR02800       170 YELQVADYDGAN-PQTITRSREPILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQREKVASF--------------PG  234 (417)
T ss_pred             ceEEEEcCCCCC-CEEeecCCCceecccCCCCCCEEEEEEcCCCCcEEEEEECCCCCEEEeecC--------------CC
Confidence            358888875443 344444556788899999999887765433  5799999987654322211              11


Q ss_pred             ceEEEEECCCCCEEEE-ecCCC--cEEEEEcccceeeeeecCCccceEEEEEcCCCCcEEEEEeCCC--eEEEEeCCCCe
Q 021247          160 FVLSVAWSPDGRRIAC-GSMDG--TISVFDVTRAKFLHHLEGHFMPVRSLVYSPVDPRVLFSASDDT--HVHMYDAEGKS  234 (315)
Q Consensus       160 ~i~~~~~~~~~~~l~~-~s~dg--~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~--~i~~wd~~~~~  234 (315)
                      .+..++|+|+|+.|+. .+.++  .|++||+.++.. ..+..+........|+|++..+++++..++  .|+++|..+++
T Consensus       235 ~~~~~~~spDg~~l~~~~~~~~~~~i~~~d~~~~~~-~~l~~~~~~~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~~~~~  313 (417)
T TIGR02800       235 MNGAPAFSPDGSKLAVSLSKDGNPDIYVMDLDGKQL-TRLTNGPGIDTEPSWSPDGKSIAFTSDRGGSPQIYMMDADGGE  313 (417)
T ss_pred             CccceEECCCCCEEEEEECCCCCccEEEEECCCCCE-EECCCCCCCCCCEEECCCCCEEEEEECCCCCceEEEEECCCCC
Confidence            2456889999987764 44444  589999887654 333344444456789984444444444333  58888887665


Q ss_pred             eEEEeecccccEEEEEEcCCCCeEEEEeCCC---cEEEEecCccceehcccccccceEEEEEeeCCCEEEEEeCCC
Q 021247          235 LVTAMSGHASWVLSVDASPDGAAITTGSSDR---TVKLWDLNMRAAMQSMTNHTDQVWGVSFRPLGGRVVSVSDDK  307 (315)
Q Consensus       235 ~~~~~~~~~~~i~~~~~~~~~~~l~s~~~d~---~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~  307 (315)
                      .. .+..+...+....|+|++++++.++.++   .|.+||+..+... .+... .......|+|+|++|+..+.++
T Consensus       314 ~~-~l~~~~~~~~~~~~spdg~~i~~~~~~~~~~~i~~~d~~~~~~~-~l~~~-~~~~~p~~spdg~~l~~~~~~~  386 (417)
T TIGR02800       314 VR-RLTFRGGYNASPSWSPDGDLIAFVHREGGGFNIAVMDLDGGGER-VLTDT-GLDESPSFAPNGRMILYATTRG  386 (417)
T ss_pred             EE-EeecCCCCccCeEECCCCCEEEEEEccCCceEEEEEeCCCCCeE-EccCC-CCCCCceECCCCCEEEEEEeCC
Confidence            43 3444455677889999999988888776   7888998875432 22222 2234568999999998777764

The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.

>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB

Probab=99.55  E-value=6.8e-12  Score=109.33  Aligned_cols=214  Identities=20%  Similarity=0.199  Sum_probs=136.7

Q ss_pred             CcEEEEcCCCCcceeeccccccceEEEEeCCCCCEEEEeeCC---CeEEEEECCCCceeEEeeCCcccEEEEEECCCCCe
Q 021247           40 ETVKLWRPDDMQLERTNTGHCLGVVSVAAHPSGIIAASASLD---SFVRVFDVDTNASIATLEASPSEVWQMQFDPKGTT  116 (315)
Q Consensus        40 ~~v~~w~~~~~~~~~~~~~h~~~v~~~~~~~~g~~l~s~~~d---~~i~~w~~~~~~~~~~~~~~~~~v~~~~~~~~~~~  116 (315)
                      ..|.++|.+.... +.+..+...+.+..|+|+|++++.+..+   ..|++||+.+++... +......+...+|+|+++.
T Consensus       170 ~~l~~~d~~g~~~-~~l~~~~~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~~~-~~~~~~~~~~~~~spDg~~  247 (417)
T TIGR02800       170 YELQVADYDGANP-QTITRSREPILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQREK-VASFPGMNGAPAFSPDGSK  247 (417)
T ss_pred             ceEEEEcCCCCCC-EEeecCCCceecccCCCCCCEEEEEEcCCCCcEEEEEECCCCCEEE-eecCCCCccceEECCCCCE
Confidence            3577777654433 3344455678889999999998876544   479999998875533 2334455667899999998


Q ss_pred             EEEEecCCC--eEEEEecCCcceeeeecCCCCCCCCCCccCCCCcceEEEEECCCCCEEEEecC-CC--cEEEEEcccce
Q 021247          117 LAVAGGGSA--SVKLWDTATWNLIATLSIPRPEGLKPTDKSSSKKFVLSVAWSPDGRRIACGSM-DG--TISVFDVTRAK  191 (315)
Q Consensus       117 ~~~~~~~d~--~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~s~-dg--~i~i~d~~~~~  191 (315)
                      ++++...++  .|.+||+.+++......              +........|+|+|++|+..+. ++  .|+++|+.+++
T Consensus       248 l~~~~~~~~~~~i~~~d~~~~~~~~l~~--------------~~~~~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~~~~~  313 (417)
T TIGR02800       248 LAVSLSKDGNPDIYVMDLDGKQLTRLTN--------------GPGIDTEPSWSPDGKSIAFTSDRGGSPQIYMMDADGGE  313 (417)
T ss_pred             EEEEECCCCCccEEEEECCCCCEEECCC--------------CCCCCCCEEECCCCCEEEEEECCCCCceEEEEECCCCC
Confidence            877665544  58888987654322111              1111335689999998876554 33  58888887665


Q ss_pred             eeeeecCCccceEEEEEcCCCCcEEEEEeCCC---eEEEEeCCCCeeEEEeecccccEEEEEEcCCCCeEEEEeCCC---
Q 021247          192 FLHHLEGHFMPVRSLVYSPVDPRVLFSASDDT---HVHMYDAEGKSLVTAMSGHASWVLSVDASPDGAAITTGSSDR---  265 (315)
Q Consensus       192 ~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~---~i~~wd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~d~---  265 (315)
                      .. .+..+........|+|+ +++++..+.++   .|.+||+.++... .+... .......|+|+++.|+..+.++   
T Consensus       314 ~~-~l~~~~~~~~~~~~spd-g~~i~~~~~~~~~~~i~~~d~~~~~~~-~l~~~-~~~~~p~~spdg~~l~~~~~~~~~~  389 (417)
T TIGR02800       314 VR-RLTFRGGYNASPSWSPD-GDLIAFVHREGGGFNIAVMDLDGGGER-VLTDT-GLDESPSFAPNGRMILYATTRGGRG  389 (417)
T ss_pred             EE-EeecCCCCccCeEECCC-CCEEEEEEccCCceEEEEEeCCCCCeE-EccCC-CCCCCceECCCCCEEEEEEeCCCcE
Confidence            33 33334445667889984 55666655554   7889998775432 22221 2234568999999887776654   


Q ss_pred             cEEEEecC
Q 021247          266 TVKLWDLN  273 (315)
Q Consensus       266 ~i~iwd~~  273 (315)
                      .+++.+..
T Consensus       390 ~l~~~~~~  397 (417)
T TIGR02800       390 VLGLVSTD  397 (417)
T ss_pred             EEEEEECC
Confidence            34444443

The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.

>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]

Probab=99.52  E-value=4e-12  Score=98.63  Aligned_cols=254  Identities=20%  Similarity=0.245  Sum_probs=166.8

Q ss_pred             cchhhhhhccccceEEEEEeecCCCCCcEEEEeeCCCcEEEEcCCCCcceee---cccccc---ceEEEEeCCCCCEEEE
Q 021247            4 AGLKSVENAHEESVWAVTWVPATETRPALLLTGSLDETVKLWRPDDMQLERT---NTGHCL---GVVSVAAHPSGIIAAS   77 (315)
Q Consensus         4 ~~~~~~~~~h~~~v~~v~~~~~~~~~~~~l~sgs~d~~v~~w~~~~~~~~~~---~~~h~~---~v~~~~~~~~g~~l~s   77 (315)
                      .++..+....+..++.+.|.-........++-+-.+|.|.++..+.......   +..-..   ...++.|++.+..+++
T Consensus        59 ~~l~~~q~~dts~~~dm~w~~~~~~g~~~l~~a~a~G~i~~~r~~~~~ss~~L~~ls~~ki~~~~~lslD~~~~~~~i~v  138 (339)
T KOG0280|consen   59 SPLDTLQCTDTSTEFDMLWRIRETDGDFNLLDAHARGQIQLYRNDEDESSVHLRGLSSKKISVVEALSLDISTSGTKIFV  138 (339)
T ss_pred             CccceeeeecccccceeeeeeccCCccceeeeccccceEEEEeeccceeeeeecccchhhhhheeeeEEEeeccCceEEE
Confidence            3344445555677888899865443334678888899999997543322111   111111   3467889999999999


Q ss_pred             eeCCCeEEEEECCCCc--eeEEeeCCcccEEEEEECCCCCeEEEEecCCCeEEEEecCC-cceeeeecCCCCCCCCCCcc
Q 021247           78 ASLDSFVRVFDVDTNA--SIATLEASPSEVWQMQFDPKGTTLAVAGGGSASVKLWDTAT-WNLIATLSIPRPEGLKPTDK  154 (315)
Q Consensus        78 ~~~d~~i~~w~~~~~~--~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~~d~~~-~~~~~~~~~~~~~~~~~~~~  154 (315)
                      .-.+|.+.+-+.....  .+++.+.|.-+.|...|+-..+.++.+|++|+.+..||+|. ++.+..            ..
T Consensus       139 s~s~G~~~~v~~t~~~le~vq~wk~He~E~Wta~f~~~~pnlvytGgDD~~l~~~D~R~p~~~i~~------------n~  206 (339)
T KOG0280|consen  139 SDSRGSISGVYETEMVLEKVQTWKVHEFEAWTAKFSDKEPNLVYTGGDDGSLSCWDIRIPKTFIWH------------NS  206 (339)
T ss_pred             EcCCCcEEEEecceeeeeecccccccceeeeeeecccCCCceEEecCCCceEEEEEecCCcceeee------------cc
Confidence            9999999866654433  34477889999999999988888999999999999999983 222221            11


Q ss_pred             CCCCcceEEEEECC-CCCEEEEecCCCcEEEEEcc-cceeeeeecCCccceEEEEEcCCCCcEEEEEeCCCeEEEEeCCC
Q 021247          155 SSSKKFVLSVAWSP-DGRRIACGSMDGTISVFDVT-RAKFLHHLEGHFMPVRSLVYSPVDPRVLFSASDDTHVHMYDAEG  232 (315)
Q Consensus       155 ~~~~~~i~~~~~~~-~~~~l~~~s~dg~i~i~d~~-~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~  232 (315)
                      ..|...|.++.-+| ...++++|+.|-.|++||.+ -++++..-. -.+.|+-+..+|.....++.+..-+-.++-+.+.
T Consensus       207 kvH~~GV~SI~ss~~~~~~I~TGsYDe~i~~~DtRnm~kPl~~~~-v~GGVWRi~~~p~~~~~lL~~CMh~G~ki~~~~~  285 (339)
T KOG0280|consen  207 KVHTSGVVSIYSSPPKPTYIATGSYDECIRVLDTRNMGKPLFKAK-VGGGVWRIKHHPEIFHRLLAACMHNGAKILDSSD  285 (339)
T ss_pred             eeeecceEEEecCCCCCceEEEeccccceeeeehhcccCccccCc-cccceEEEEecchhhhHHHHHHHhcCceEEEecc
Confidence            22444577887776 47799999999999999998 445544322 2367899999996554444444433355555443


Q ss_pred             C--e---eEEEeecccccEEEEEEcCCCCeEEEEe-CCCcEE-EE
Q 021247          233 K--S---LVTAMSGHASWVLSVDASPDGAAITTGS-SDRTVK-LW  270 (315)
Q Consensus       233 ~--~---~~~~~~~~~~~i~~~~~~~~~~~l~s~~-~d~~i~-iw  270 (315)
                      .  +   .......|.+-+..-+|+.....|+|++ .|+.++ +|
T Consensus       286 ~~~e~~~~~~s~~~hdSl~YG~DWd~~~~~lATCsFYDk~~~~~W  330 (339)
T KOG0280|consen  286 KVLEFQIVLPSDKIHDSLCYGGDWDSKDSFLATCSFYDKKIRQLW  330 (339)
T ss_pred             cccchheeeeccccccceeeccccccccceeeeeeccccceeeee
Confidence            2  2   2333456666666667755545677754 344433 44

>PRK00178 tolB translocation protein TolB; Provisional

Probab=99.51  E-value=2.6e-11  Score=105.99  Aligned_cols=211  Identities=18%  Similarity=0.185  Sum_probs=131.7

Q ss_pred             eEEEEECCCCceeEEeeCCcccEEEEEECCCCCeEEEEecCC--CeEEEEecCCcceeeeecCCCCCCCCCCccCCCCcc
Q 021247           83 FVRVFDVDTNASIATLEASPSEVWQMQFDPKGTTLAVAGGGS--ASVKLWDTATWNLIATLSIPRPEGLKPTDKSSSKKF  160 (315)
Q Consensus        83 ~i~~w~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d--~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  160 (315)
                      .|.++|.+... ...+..+...+...+|+|+|+.++++...+  ..|.+||+.+++.......              ...
T Consensus       180 ~l~~~d~~g~~-~~~l~~~~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~~l~~~--------------~g~  244 (430)
T PRK00178        180 TLQRSDYDGAR-AVTLLQSREPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRREQITNF--------------EGL  244 (430)
T ss_pred             EEEEECCCCCC-ceEEecCCCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEEEccCC--------------CCC
Confidence            47777876544 344445566788999999999887765443  4688999987654321111              112


Q ss_pred             eEEEEECCCCCEEE-EecCCC--cEEEEEcccceeeeeecCCccceEEEEEcCCCCcEEEEEeCCC--eEEEEeCCCCee
Q 021247          161 VLSVAWSPDGRRIA-CGSMDG--TISVFDVTRAKFLHHLEGHFMPVRSLVYSPVDPRVLFSASDDT--HVHMYDAEGKSL  235 (315)
Q Consensus       161 i~~~~~~~~~~~l~-~~s~dg--~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~--~i~~wd~~~~~~  235 (315)
                      .....|+|+|+.|+ +...++  .|+++|+.+++.. .+..+........|+|++..++++...++  .|+++|+.+++.
T Consensus       245 ~~~~~~SpDG~~la~~~~~~g~~~Iy~~d~~~~~~~-~lt~~~~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~g~~  323 (430)
T PRK00178        245 NGAPAWSPDGSKLAFVLSKDGNPEIYVMDLASRQLS-RVTNHPAIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVNGGRA  323 (430)
T ss_pred             cCCeEECCCCCEEEEEEccCCCceEEEEECCCCCeE-EcccCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECCCCCE
Confidence            34688999999886 444444  5888899876543 34444445566789996555555554443  577788776654


Q ss_pred             EEEeecccccEEEEEEcCCCCeEEEEeCC-C--cEEEEecCccceehcccccccceEEEEEeeCCCEEEEEeCC-CcEEE
Q 021247          236 VTAMSGHASWVLSVDASPDGAAITTGSSD-R--TVKLWDLNMRAAMQSMTNHTDQVWGVSFRPLGGRVVSVSDD-KSISL  311 (315)
Q Consensus       236 ~~~~~~~~~~i~~~~~~~~~~~l~s~~~d-~--~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d-~~i~i  311 (315)
                      .. +...........|+|+|+.++..+.+ +  .|.++|+.+++... +.. ........|+|+|+.++..+.+ +.-+|
T Consensus       324 ~~-lt~~~~~~~~~~~Spdg~~i~~~~~~~~~~~l~~~dl~tg~~~~-lt~-~~~~~~p~~spdg~~i~~~~~~~g~~~l  400 (430)
T PRK00178        324 ER-VTFVGNYNARPRLSADGKTLVMVHRQDGNFHVAAQDLQRGSVRI-LTD-TSLDESPSVAPNGTMLIYATRQQGRGVL  400 (430)
T ss_pred             EE-eecCCCCccceEECCCCCEEEEEEccCCceEEEEEECCCCCEEE-ccC-CCCCCCceECCCCCEEEEEEecCCceEE
Confidence            32 22112233456899999988766543 3  47888988765322 221 1122245899999998765544 44333


Q ss_pred             e
Q 021247          312 Y  312 (315)
Q Consensus       312 ~  312 (315)
                      |
T Consensus       401 ~  401 (430)
T PRK00178        401 M  401 (430)
T ss_pred             E
Confidence            3

>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]

Probab=99.49  E-value=1.4e-11  Score=104.08  Aligned_cols=191  Identities=22%  Similarity=0.353  Sum_probs=144.6

Q ss_pred             EEEEecCCCeEEEEecCCcceeeeecCCCCCCCCCCccCCCCcceEEEEEC--------------CCCCEEEEecCCCcE
Q 021247          117 LAVAGGGSASVKLWDTATWNLIATLSIPRPEGLKPTDKSSSKKFVLSVAWS--------------PDGRRIACGSMDGTI  182 (315)
Q Consensus       117 ~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--------------~~~~~l~~~s~dg~i  182 (315)
                      +++....||.+++||....+....+.....-..    ......+...+..+              .+-..++-|...|.|
T Consensus         7 ~~A~~~~~g~l~iw~t~~~~~~~e~~p~~~~s~----t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~t~~lvlgt~~g~v   82 (541)
T KOG4547|consen    7 YFALSTGDGRLRIWDTAKNQLQQEFAPIASLSG----TCTYTKWGLSADYSPMKWLSLEKAKKASLDTSMLVLGTPQGSV   82 (541)
T ss_pred             eEeecCCCCeEEEEEccCceeeeeeccchhccC----cceeEEEEEEeccchHHHHhHHHHhhccCCceEEEeecCCccE
Confidence            445567899999999998776655532111000    00000011111111              123467789999999


Q ss_pred             EEEEcccceeeeeec--CCccceEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCeeEEEeecccccEEEEEEcCCCCeEEE
Q 021247          183 SVFDVTRAKFLHHLE--GHFMPVRSLVYSPVDPRVLFSASDDTHVHMYDAEGKSLVTAMSGHASWVLSVDASPDGAAITT  260 (315)
Q Consensus       183 ~i~d~~~~~~~~~~~--~~~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s  260 (315)
                      .+|++..++....+.  .|-+.|.++.++. +-..|.+++.|.++..|+.+..............+.+++++||+.++++
T Consensus        83 ~~ys~~~g~it~~~st~~h~~~v~~~~~~~-~~~ciyS~~ad~~v~~~~~~~~~~~~~~~~~~~~~~sl~is~D~~~l~~  161 (541)
T KOG4547|consen   83 LLYSVAGGEITAKLSTDKHYGNVNEILDAQ-RLGCIYSVGADLKVVYILEKEKVIIRIWKEQKPLVSSLCISPDGKILLT  161 (541)
T ss_pred             EEEEecCCeEEEEEecCCCCCcceeeeccc-ccCceEecCCceeEEEEecccceeeeeeccCCCccceEEEcCCCCEEEe
Confidence            999999998877776  5888899998875 6778999999999999999999888888888888999999999999998


Q ss_pred             EeCCCcEEEEecCccceehcccccccceEEEEEeeC-----CCEEE-EEeCCCcEEEeec
Q 021247          261 GSSDRTVKLWDLNMRAAMQSMTNHTDQVWGVSFRPL-----GGRVV-SVSDDKSISLYEY  314 (315)
Q Consensus       261 ~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~-----~~~l~-s~~~d~~i~i~~~  314 (315)
                      |+  +.|++||+++++.+.++++|..+|..+.|-.+     |.+++ +...+.-|.+|..
T Consensus       162 as--~~ik~~~~~~kevv~~ftgh~s~v~t~~f~~~~~g~~G~~vLssa~~~r~i~~w~v  219 (541)
T KOG4547|consen  162 AS--RQIKVLDIETKEVVITFTGHGSPVRTLSFTTLIDGIIGKYVLSSAAAERGITVWVV  219 (541)
T ss_pred             cc--ceEEEEEccCceEEEEecCCCcceEEEEEEEeccccccceeeeccccccceeEEEE
Confidence            87  57999999999999999999999999999988     67765 4555666666653

>PLN02919 haloacid dehalogenase-like hydrolase family protein

Probab=99.48  E-value=1.9e-10  Score=109.44  Aligned_cols=248  Identities=15%  Similarity=0.141  Sum_probs=162.0

Q ss_pred             EEEeCC-CCCEEEEeeCCCeEEEEECCCCceeEEeeC-C-------------cccEEEEEECCCCCeEEEEecCCCeEEE
Q 021247           65 SVAAHP-SGIIAASASLDSFVRVFDVDTNASIATLEA-S-------------PSEVWQMQFDPKGTTLAVAGGGSASVKL  129 (315)
Q Consensus        65 ~~~~~~-~g~~l~s~~~d~~i~~w~~~~~~~~~~~~~-~-------------~~~v~~~~~~~~~~~~~~~~~~d~~i~~  129 (315)
                      .+.+++ +|.++++-..++.|+++|.... .+..+.. .             -.....++++++++.++++-..+..|++
T Consensus       572 gvavd~~~g~lyVaDs~n~rI~v~d~~G~-~i~~ig~~g~~G~~dG~~~~a~f~~P~GIavd~~gn~LYVaDt~n~~Ir~  650 (1057)
T PLN02919        572 KLAIDLLNNRLFISDSNHNRIVVTDLDGN-FIVQIGSTGEEGLRDGSFEDATFNRPQGLAYNAKKNLLYVADTENHALRE  650 (1057)
T ss_pred             eEEEECCCCeEEEEECCCCeEEEEeCCCC-EEEEEccCCCcCCCCCchhccccCCCcEEEEeCCCCEEEEEeCCCceEEE
Confidence            567776 4668888888899999998644 3333322 1             1134688899988877777667789999


Q ss_pred             EecCCcceeeeecCCCCCCCCCCcc----CCCCcceEEEEECC-CCCEEEEecCCCcEEEEEcccceeeeee--------
Q 021247          130 WDTATWNLIATLSIPRPEGLKPTDK----SSSKKFVLSVAWSP-DGRRIACGSMDGTISVFDVTRAKFLHHL--------  196 (315)
Q Consensus       130 ~d~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~i~~~~~~~-~~~~l~~~s~dg~i~i~d~~~~~~~~~~--------  196 (315)
                      +|..++. +.++......+......    ...-.....++++| ++..+++.+.++.|++||..++......        
T Consensus       651 id~~~~~-V~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~~~~I~v~d~~~g~v~~~~G~G~~~~~  729 (1057)
T PLN02919        651 IDFVNET-VRTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAGQHQIWEYNISDGVTRVFSGDGYERNL  729 (1057)
T ss_pred             EecCCCE-EEEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECCCCeEEEEECCCCeEEEEecCCccccC
Confidence            9987643 33332111000000000    00011245799999 5666677888899999998766532110        


Q ss_pred             cC------CccceEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCeeEEEee-------------c--------ccccEEEE
Q 021247          197 EG------HFMPVRSLVYSPVDPRVLFSASDDTHVHMYDAEGKSLVTAMS-------------G--------HASWVLSV  249 (315)
Q Consensus       197 ~~------~~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~-------------~--------~~~~i~~~  249 (315)
                      .+      .......++++|++..++++-+.++.|++||++++.......             .        .-.....+
T Consensus       730 ~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~Gv  809 (1057)
T PLN02919        730 NGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHPLGV  809 (1057)
T ss_pred             CCCccccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCcEEEEEecccccCcccccccCCCCchhhhhccCCcee
Confidence            01      112346789998666677888888999999987654221100             0        01134688


Q ss_pred             EEcCCCCeEEEEeCCCcEEEEecCccceehcc-------------cccccceEEEEEeeCCCEEEEEeCCCcEEEeec
Q 021247          250 DASPDGAAITTGSSDRTVKLWDLNMRAAMQSM-------------TNHTDQVWGVSFRPLGGRVVSVSDDKSISLYEY  314 (315)
Q Consensus       250 ~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~-------------~~~~~~v~~~~~s~~~~~l~s~~~d~~i~i~~~  314 (315)
                      +++++|.++++-..+++|++||..++......             ...-....+++++++|+.+++-+.+++|++||.
T Consensus       810 avd~dG~LYVADs~N~rIrviD~~tg~v~tiaG~G~~G~~dG~~~~a~l~~P~GIavd~dG~lyVaDt~Nn~Irvid~  887 (1057)
T PLN02919        810 LCAKDGQIYVADSYNHKIKKLDPATKRVTTLAGTGKAGFKDGKALKAQLSEPAGLALGENGRLFVADTNNSLIRYLDL  887 (1057)
T ss_pred             eEeCCCcEEEEECCCCEEEEEECCCCeEEEEeccCCcCCCCCcccccccCCceEEEEeCCCCEEEEECCCCEEEEEEC
Confidence            99999999899999999999999865543211             112235778999999998889899999999986

>KOG2321 consensus WD40 repeat protein [General function prediction only]

Probab=99.48  E-value=3.1e-12  Score=107.67  Aligned_cols=205  Identities=15%  Similarity=0.235  Sum_probs=152.6

Q ss_pred             EEEEeCC-CCCEEEEeeCCCeEEEEECCCCceeEEeeCCcccEEEEEECCCCCeEEEEecCCCeEEEEecCCcceeeeec
Q 021247           64 VSVAAHP-SGIIAASASLDSFVRVFDVDTNASIATLEASPSEVWQMQFDPKGTTLAVAGGGSASVKLWDTATWNLIATLS  142 (315)
Q Consensus        64 ~~~~~~~-~g~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~  142 (315)
                      ..++.+. ...+++ ++....|+-++++.|.-+..+....+.++.+..++-.. ++++|+.+|.|-.||.+....+.++.
T Consensus       137 RDm~y~~~scDly~-~gsg~evYRlNLEqGrfL~P~~~~~~~lN~v~in~~hg-Lla~Gt~~g~VEfwDpR~ksrv~~l~  214 (703)
T KOG2321|consen  137 RDMKYHKPSCDLYL-VGSGSEVYRLNLEQGRFLNPFETDSGELNVVSINEEHG-LLACGTEDGVVEFWDPRDKSRVGTLD  214 (703)
T ss_pred             ccccccCCCccEEE-eecCcceEEEEccccccccccccccccceeeeecCccc-eEEecccCceEEEecchhhhhheeee
Confidence            4455553 344444 44445688889999998888888888999999998765 56778889999999999877776665


Q ss_pred             CCCCCCCCCCccCCCCcceEEEEECCCCCEEEEecCCCcEEEEEcccceeeee-ecCCccceEEEEEcCCCCcEEEEEeC
Q 021247          143 IPRPEGLKPTDKSSSKKFVLSVAWSPDGRRIACGSMDGTISVFDVTRAKFLHH-LEGHFMPVRSLVYSPVDPRVLFSASD  221 (315)
Q Consensus       143 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~s~dg~i~i~d~~~~~~~~~-~~~~~~~v~~~~~~~~~~~~l~s~~~  221 (315)
                      .....+..|.  ......|+++.|+.+|-.+++|+.+|.+.|||++..+++.. -.+...+|..+.|.+.+.+--+...+
T Consensus       215 ~~~~v~s~pg--~~~~~svTal~F~d~gL~~aVGts~G~v~iyDLRa~~pl~~kdh~~e~pi~~l~~~~~~~q~~v~S~D  292 (703)
T KOG2321|consen  215 AASSVNSHPG--GDAAPSVTALKFRDDGLHVAVGTSTGSVLIYDLRASKPLLVKDHGYELPIKKLDWQDTDQQNKVVSMD  292 (703)
T ss_pred             cccccCCCcc--ccccCcceEEEecCCceeEEeeccCCcEEEEEcccCCceeecccCCccceeeecccccCCCceEEecc
Confidence            4433211111  11223489999999999999999999999999998876543 23346689999998765554455556


Q ss_pred             CCeEEEEeCCCCeeEEEeecccccEEEEEEcCCCCeEEEEeCCCcEEEEecC
Q 021247          222 DTHVHMYDAEGKSLVTAMSGHASWVLSVDASPDGAAITTGSSDRTVKLWDLN  273 (315)
Q Consensus       222 d~~i~~wd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~d~~i~iwd~~  273 (315)
                      ...++|||-..++....+..-. .++.+++-|++.++++|-.+..+..|=+.
T Consensus       293 k~~~kiWd~~~Gk~~asiEpt~-~lND~C~~p~sGm~f~Ane~~~m~~yyiP  343 (703)
T KOG2321|consen  293 KRILKIWDECTGKPMASIEPTS-DLNDFCFVPGSGMFFTANESSKMHTYYIP  343 (703)
T ss_pred             hHHhhhcccccCCceeeccccC-CcCceeeecCCceEEEecCCCcceeEEcc
Confidence            6789999999888877666433 48899999999999999988888776554

>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]

Probab=99.47  E-value=1.6e-10  Score=97.26  Aligned_cols=286  Identities=16%  Similarity=0.257  Sum_probs=178.8

Q ss_pred             cceEEEEEeecCCCCCcEEEEeeCCCcEEEEcCCCCcceeeccccccceEEEEeCCCCCEEEE-----eeCC-----CeE
Q 021247           15 ESVWAVTWVPATETRPALLLTGSLDETVKLWRPDDMQLERTNTGHCLGVVSVAAHPSGIIAAS-----ASLD-----SFV   84 (315)
Q Consensus        15 ~~v~~v~~~~~~~~~~~~l~sgs~d~~v~~w~~~~~~~~~~~~~h~~~v~~~~~~~~g~~l~s-----~~~d-----~~i   84 (315)
                      .+++..++++.+.     ++.-+.+..++|++..+.+........  .+..+.|+|.|.+|.+     ...+     -.+
T Consensus        35 ~~~~v~~~S~~G~-----lfA~~~~~~v~i~~~~~~~~~lt~~~~--~~~~L~fSP~g~yL~T~e~~~i~~~~~~~~pn~  107 (566)
T KOG2315|consen   35 RPCNVFAYSNNGR-----LFAYSDNQVVKVFEIATLKVVLCVELK--KTYDLLFSPKGNYLLTWEPWAIYGPKNASNPNV  107 (566)
T ss_pred             CcceeEEEcCCCc-----EEEEEcCCeEEEEEccCCcEEEEeccc--eeeeeeecccccccccccccccccCCCCCCCce
Confidence            3456666776554     777888899999987766433332222  6789999999998864     2222     337


Q ss_pred             EEEECCCCceeEEeeCCcccEEEEEECCCCCeEEEEecCCCeEEEEecCCcceee---------eecCC-----------
Q 021247           85 RVFDVDTNASIATLEASPSEVWQMQFDPKGTTLAVAGGGSASVKLWDTATWNLIA---------TLSIP-----------  144 (315)
Q Consensus        85 ~~w~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~---------~~~~~-----------  144 (315)
                      ++|+++++.....+......-|..+|+++...  ++--..+.+.+|++...+.+.         .+.+.           
T Consensus       108 ~v~~vet~~~~s~~q~k~Q~~W~~qfs~dEsl--~arlv~nev~f~~~~~f~~~~~kl~~~~i~~f~lSpgp~~~~vAvy  185 (566)
T KOG2315|consen  108 LVYNVETGVQRSQIQKKMQNGWVPQFSIDESL--AARLVSNEVQFYDLGSFKTIQHKLSVSGITMLSLSPGPEPPFVAVY  185 (566)
T ss_pred             eeeeeccceehhheehhhhcCcccccccchhh--hhhhhcceEEEEecCCccceeeeeeccceeeEEecCCCCCceEEEE
Confidence            79999985544444443333478889888653  223345678888876533221         11110           


Q ss_pred             --CCCCCC--------C----CccCCCCcc----eEEEEECCCCCEE-E-Eec-C---------CCcEEEEEcccceeee
Q 021247          145 --RPEGLK--------P----TDKSSSKKF----VLSVAWSPDGRRI-A-CGS-M---------DGTISVFDVTRAKFLH  194 (315)
Q Consensus       145 --~~~~~~--------~----~~~~~~~~~----i~~~~~~~~~~~l-~-~~s-~---------dg~i~i~d~~~~~~~~  194 (315)
                        ...+.+        +    ......+.+    -..+.|++-|.-| + +.+ -         +..+++.++......-
T Consensus       186 vPe~kGaPa~vri~~~~~~~~~~~~a~ksFFkadkvqm~WN~~gt~LLvLastdVDktn~SYYGEq~Lyll~t~g~s~~V  265 (566)
T KOG2315|consen  186 VPEKKGAPASVRIYKYPEEGQHQPVANKSFFKADKVQMKWNKLGTALLVLASTDVDKTNASYYGEQTLYLLATQGESVSV  265 (566)
T ss_pred             ccCCCCCCcEEEEeccccccccchhhhccccccceeEEEeccCCceEEEEEEEeecCCCccccccceEEEEEecCceEEE
Confidence              000000        0    000000111    1257788766532 2 221 1         3357888776444333


Q ss_pred             eecCCccceEEEEEcCCCCcEEEEE-eCCCeEEEEeCCCCeeEEEeecccccEEEEEEcCCCCeEEEEeCC---CcEEEE
Q 021247          195 HLEGHFMPVRSLVYSPVDPRVLFSA-SDDTHVHMYDAEGKSLVTAMSGHASWVLSVDASPDGAAITTGSSD---RTVKLW  270 (315)
Q Consensus       195 ~~~~~~~~v~~~~~~~~~~~~l~s~-~~d~~i~~wd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~d---~~i~iw  270 (315)
                      .+. ..++|.++.|+|....+.+.- -.--++.+||++..-+ ..+  ..++=+.+-|+|.|++++.+|-+   |.|-||
T Consensus       266 ~L~-k~GPVhdv~W~~s~~EF~VvyGfMPAkvtifnlr~~~v-~df--~egpRN~~~fnp~g~ii~lAGFGNL~G~mEvw  341 (566)
T KOG2315|consen  266 PLL-KEGPVHDVTWSPSGREFAVVYGFMPAKVTIFNLRGKPV-FDF--PEGPRNTAFFNPHGNIILLAGFGNLPGDMEVW  341 (566)
T ss_pred             ecC-CCCCceEEEECCCCCEEEEEEecccceEEEEcCCCCEe-EeC--CCCCccceEECCCCCEEEEeecCCCCCceEEE
Confidence            333 368999999999665554443 4567899999886533 222  23455678899999999888775   689999


Q ss_pred             ecCccceehcccccccceEEEEEeeCCCEEEEEeC------CCcEEEeecC
Q 021247          271 DLNMRAAMQSMTNHTDQVWGVSFRPLGGRVVSVSD------DKSISLYEYS  315 (315)
Q Consensus       271 d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~------d~~i~i~~~~  315 (315)
                      |+..++.+..+..  ...+-+.|+|||.+++++..      |..++||+|+
T Consensus       342 Dv~n~K~i~~~~a--~~tt~~eW~PdGe~flTATTaPRlrvdNg~Kiwhyt  390 (566)
T KOG2315|consen  342 DVPNRKLIAKFKA--ANTTVFEWSPDGEYFLTATTAPRLRVDNGIKIWHYT  390 (566)
T ss_pred             eccchhhcccccc--CCceEEEEcCCCcEEEEEeccccEEecCCeEEEEec
Confidence            9999887776643  33455899999999987654      7899999874

>PRK04792 tolB translocation protein TolB; Provisional

Probab=99.46  E-value=1.2e-10  Score=101.73  Aligned_cols=207  Identities=19%  Similarity=0.205  Sum_probs=126.3

Q ss_pred             eEEEEECCCCceeEEeeCCcccEEEEEECCCCCeEEEEecCC--CeEEEEecCCcceeeeecCCCCCCCCCCccCCCCcc
Q 021247           83 FVRVFDVDTNASIATLEASPSEVWQMQFDPKGTTLAVAGGGS--ASVKLWDTATWNLIATLSIPRPEGLKPTDKSSSKKF  160 (315)
Q Consensus        83 ~i~~w~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d--~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  160 (315)
                      .+.++|...... ..+......+....|+|+|+.++++...+  ..|.+||+.+++.......              ...
T Consensus       199 ~l~i~d~dG~~~-~~l~~~~~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~~lt~~--------------~g~  263 (448)
T PRK04792        199 QLMIADYDGYNE-QMLLRSPEPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVREKVTSF--------------PGI  263 (448)
T ss_pred             EEEEEeCCCCCc-eEeecCCCcccCceECCCCCEEEEEEecCCCcEEEEEECCCCCeEEecCC--------------CCC
Confidence            567777655433 34444566788899999999887765444  3688889877654321111              111


Q ss_pred             eEEEEECCCCCEEEE-ecCCCc--EEEEEcccceeeeeecCCccceEEEEEcCCCCcEEEEEeCCC--eEEEEeCCCCee
Q 021247          161 VLSVAWSPDGRRIAC-GSMDGT--ISVFDVTRAKFLHHLEGHFMPVRSLVYSPVDPRVLFSASDDT--HVHMYDAEGKSL  235 (315)
Q Consensus       161 i~~~~~~~~~~~l~~-~s~dg~--i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~--~i~~wd~~~~~~  235 (315)
                      ....+|+|+|+.|+. ...++.  |+++|+.+++. ..+..+........|+|++..+++++..++  .|+++|..+++.
T Consensus       264 ~~~~~wSPDG~~La~~~~~~g~~~Iy~~dl~tg~~-~~lt~~~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g~~  342 (448)
T PRK04792        264 NGAPRFSPDGKKLALVLSKDGQPEIYVVDIATKAL-TRITRHRAIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLASGKV  342 (448)
T ss_pred             cCCeeECCCCCEEEEEEeCCCCeEEEEEECCCCCe-EECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCE
Confidence            235789999998864 455664  88888877654 334444445567889996555555554444  577778776654


Q ss_pred             EEEeecccccEEEEEEcCCCCeEEEEeC-CCc--EEEEecCccceehcccccccceEEEEEeeCCCEEEEEeC-CCc
Q 021247          236 VTAMSGHASWVLSVDASPDGAAITTGSS-DRT--VKLWDLNMRAAMQSMTNHTDQVWGVSFRPLGGRVVSVSD-DKS  308 (315)
Q Consensus       236 ~~~~~~~~~~i~~~~~~~~~~~l~s~~~-d~~--i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~-d~~  308 (315)
                      .. +..+........|+|+|++++..+. ++.  |.++|+..++.. .+... .......|+|+|++|+..+. ++.
T Consensus       343 ~~-Lt~~g~~~~~~~~SpDG~~l~~~~~~~g~~~I~~~dl~~g~~~-~lt~~-~~d~~ps~spdG~~I~~~~~~~g~  416 (448)
T PRK04792        343 SR-LTFEGEQNLGGSITPDGRSMIMVNRTNGKFNIARQDLETGAMQ-VLTST-RLDESPSVAPNGTMVIYSTTYQGK  416 (448)
T ss_pred             EE-EecCCCCCcCeeECCCCCEEEEEEecCCceEEEEEECCCCCeE-EccCC-CCCCCceECCCCCEEEEEEecCCc
Confidence            33 2222223345689999998766554 443  455677666432 22221 11224479999998865444 444

>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]

Probab=99.45  E-value=5.8e-11  Score=92.28  Aligned_cols=172  Identities=21%  Similarity=0.273  Sum_probs=123.0

Q ss_pred             EEEEecCCCeEEEEecCCcceeeeecCCCCCCCCCCccCCCCcceEEEEECCCCCEEEEecCCCcEEEEEccccee--ee
Q 021247          117 LAVAGGGSASVKLWDTATWNLIATLSIPRPEGLKPTDKSSSKKFVLSVAWSPDGRRIACGSMDGTISVFDVTRAKF--LH  194 (315)
Q Consensus       117 ~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~s~dg~i~i~d~~~~~~--~~  194 (315)
                      .++-....|.|.+|..........+..-..       +......-.++.|++.+..++++-.+|.+.+-+......  .+
T Consensus        87 ~l~~a~a~G~i~~~r~~~~~ss~~L~~ls~-------~ki~~~~~lslD~~~~~~~i~vs~s~G~~~~v~~t~~~le~vq  159 (339)
T KOG0280|consen   87 NLLDAHARGQIQLYRNDEDESSVHLRGLSS-------KKISVVEALSLDISTSGTKIFVSDSRGSISGVYETEMVLEKVQ  159 (339)
T ss_pred             eeeeccccceEEEEeeccceeeeeecccch-------hhhhheeeeEEEeeccCceEEEEcCCCcEEEEecceeeeeecc
Confidence            344456678888886543222222211000       000111245788999999999999999988665443333  34


Q ss_pred             eecCCccceEEEEEcCCCCcEEEEEeCCCeEEEEeCC-CCeeEEE-eecccccEEEEEEcC-CCCeEEEEeCCCcEEEEe
Q 021247          195 HLEGHFMPVRSLVYSPVDPRVLFSASDDTHVHMYDAE-GKSLVTA-MSGHASWVLSVDASP-DGAAITTGSSDRTVKLWD  271 (315)
Q Consensus       195 ~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~-~~~~~~~-~~~~~~~i~~~~~~~-~~~~l~s~~~d~~i~iwd  271 (315)
                      .++.|..+.+...|+..+++++.+|++|+.+..||++ .++.+-. ..-|...|.++.-+| .+.+++||+.|..|++||
T Consensus       160 ~wk~He~E~Wta~f~~~~pnlvytGgDD~~l~~~D~R~p~~~i~~n~kvH~~GV~SI~ss~~~~~~I~TGsYDe~i~~~D  239 (339)
T KOG0280|consen  160 TWKVHEFEAWTAKFSDKEPNLVYTGGDDGSLSCWDIRIPKTFIWHNSKVHTSGVVSIYSSPPKPTYIATGSYDECIRVLD  239 (339)
T ss_pred             cccccceeeeeeecccCCCceEEecCCCceEEEEEecCCcceeeecceeeecceEEEecCCCCCceEEEeccccceeeee
Confidence            7889999999999998899999999999999999998 3333322 456888899998877 477999999999999999


Q ss_pred             cC-ccceehcccccccceEEEEEeeC
Q 021247          272 LN-MRAAMQSMTNHTDQVWGVSFRPL  296 (315)
Q Consensus       272 ~~-~~~~~~~~~~~~~~v~~~~~s~~  296 (315)
                      .+ .++++..-+ -.+.||.+.++|-
T Consensus       240 tRnm~kPl~~~~-v~GGVWRi~~~p~  264 (339)
T KOG0280|consen  240 TRNMGKPLFKAK-VGGGVWRIKHHPE  264 (339)
T ss_pred             hhcccCccccCc-cccceEEEEecch
Confidence            98 566665533 3478999999885

>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]

Probab=99.45  E-value=1.1e-11  Score=98.30  Aligned_cols=280  Identities=15%  Similarity=0.260  Sum_probs=170.2

Q ss_pred             ccceEEEEEeecCCCCCcEEEEeeCCCcEEEEcCCCCccee-----------------------------------e-cc
Q 021247           14 EESVWAVTWVPATETRPALLLTGSLDETVKLWRPDDMQLER-----------------------------------T-NT   57 (315)
Q Consensus        14 ~~~v~~v~~~~~~~~~~~~l~sgs~d~~v~~w~~~~~~~~~-----------------------------------~-~~   57 (315)
                      +++|+.+.|.+.++  .+.++....|.+|++|........+                                   . ..
T Consensus        84 eEKinkIrw~~~~n--~a~FLlstNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aN  161 (433)
T KOG1354|consen   84 EEKINKIRWLDDGN--LAEFLLSTNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYAN  161 (433)
T ss_pred             hhhhhhceecCCCC--ccEEEEecCCcceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccc
Confidence            46899999998775  3567777889999999754321111                                   0 13


Q ss_pred             ccccceEEEEeCCCCCEEEEeeCCCeEEEEECCC-CceeEEeeCCc-------ccEEEEEECCCCCeEEEEecCCCeEEE
Q 021247           58 GHCLGVVSVAAHPSGIIAASASLDSFVRVFDVDT-NASIATLEASP-------SEVWQMQFDPKGTTLAVAGGGSASVKL  129 (315)
Q Consensus        58 ~h~~~v~~~~~~~~g~~l~s~~~d~~i~~w~~~~-~~~~~~~~~~~-------~~v~~~~~~~~~~~~~~~~~~d~~i~~  129 (315)
                      +|.--|++++++.|+..++++. |=.|.+|+++- .++...++..+       .-|.+..|+|....+++-.+..|+|++
T Consensus       162 aHtyhiNSIS~NsD~Et~lSAD-dLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSSSKGtIrL  240 (433)
T KOG1354|consen  162 AHTYHINSISVNSDKETFLSAD-DLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSSSKGTIRL  240 (433)
T ss_pred             cceeEeeeeeecCccceEeecc-ceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHccEEEEecCCCcEEE
Confidence            5777899999999999999875 66799999874 44555554433       237788899988777777888999999


Q ss_pred             EecCCcceeee-ec-CCCCCCCCCCccC---CCCcceEEEEECCCCCEEEEecCCCcEEEEEc-ccceeeeeecCCcc--
Q 021247          130 WDTATWNLIAT-LS-IPRPEGLKPTDKS---SSKKFVLSVAWSPDGRRIACGSMDGTISVFDV-TRAKFLHHLEGHFM--  201 (315)
Q Consensus       130 ~d~~~~~~~~~-~~-~~~~~~~~~~~~~---~~~~~i~~~~~~~~~~~l~~~s~dg~i~i~d~-~~~~~~~~~~~~~~--  201 (315)
                      -|+|...+.-. .. ...++.  |....   .--..|..+.|+++|+++++-.. -+|++||+ ...+++.....|..  
T Consensus       241 cDmR~~aLCd~hsKlfEeped--p~~rsffseiIsSISDvKFs~sGryilsRDy-ltvk~wD~nme~~pv~t~~vh~~lr  317 (433)
T KOG1354|consen  241 CDMRQSALCDAHSKLFEEPED--PSSRSFFSEIISSISDVKFSHSGRYILSRDY-LTVKLWDLNMEAKPVETYPVHEYLR  317 (433)
T ss_pred             eechhhhhhcchhhhhccccC--CcchhhHHHHhhhhhceEEccCCcEEEEecc-ceeEEEeccccCCcceEEeehHhHH
Confidence            99985332100 00 011111  11111   11233778999999999997644 48999999 44555555544421  


Q ss_pred             ----------ce---EEEEEcCCCCcEEEEEeCCCeEEEEeCCCCeeE-EEeecc--cccEEEEEEcCCCCeEEEEeCCC
Q 021247          202 ----------PV---RSLVYSPVDPRVLFSASDDTHVHMYDAEGKSLV-TAMSGH--ASWVLSVDASPDGAAITTGSSDR  265 (315)
Q Consensus       202 ----------~v---~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~-~~~~~~--~~~i~~~~~~~~~~~l~s~~~d~  265 (315)
                                .|   ..+.|+. ++.++++|+-....++|+...+... ..+..-  ......+   ...+.+.+++...
T Consensus       318 ~kLc~lYEnD~IfdKFec~~sg-~~~~v~TGsy~n~frvf~~~~gsk~d~tl~asr~~~~~~~~---~k~~~V~~~g~r~  393 (433)
T KOG1354|consen  318 SKLCSLYENDAIFDKFECSWSG-NDSYVMTGSYNNVFRVFNLARGSKEDFTLEASRKNMKPRKV---LKLRLVSSSGKRK  393 (433)
T ss_pred             HHHHHHhhccchhheeEEEEcC-CcceEecccccceEEEecCCCCcceeecccccccCCccccc---ccceeeecCCCcc
Confidence                      22   3467775 5678999999999999996654322 111111  1111111   1223455555554


Q ss_pred             cEEEEecCccceehcccccccceEEEEEeeCCCEEEEEeCCCcEEEe
Q 021247          266 TVKLWDLNMRAAMQSMTNHTDQVWGVSFRPLGGRVVSVSDDKSISLY  312 (315)
Q Consensus       266 ~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~i~i~  312 (315)
                      ...+|--.       + .....+...+|+|.-+.+|.+.. ..+.||
T Consensus       394 ~~~~~vd~-------l-df~kkilh~aWhp~en~ia~aat-nnlyif  431 (433)
T KOG1354|consen  394 RDEISVDA-------L-DFRKKILHTAWHPKENSIAVAAT-NNLYIF  431 (433)
T ss_pred             ccccccch-------h-hhhhHHHhhccCCccceeeeeec-CceEEe
Confidence            43332110       1 11223445679998776655443 455554

>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]

Probab=99.43  E-value=4.8e-09  Score=84.27  Aligned_cols=281  Identities=14%  Similarity=0.232  Sum_probs=174.6

Q ss_pred             EEEeeC----CCcEEEEcCCCC--cce-eeccccccceEEEEeCCCCCEEEEeeC---CCeEEEEECCC--Cce--eEEe
Q 021247           33 LLTGSL----DETVKLWRPDDM--QLE-RTNTGHCLGVVSVAAHPSGIIAASASL---DSFVRVFDVDT--NAS--IATL   98 (315)
Q Consensus        33 l~sgs~----d~~v~~w~~~~~--~~~-~~~~~h~~~v~~~~~~~~g~~l~s~~~---d~~i~~w~~~~--~~~--~~~~   98 (315)
                      ++.|+.    +.-|+.|++++.  ++. .+...+...++-|.++|+++.|.++-.   +|.|-.+.++.  +..  +...
T Consensus         5 ~YiGtyT~~~s~gI~v~~ld~~~g~l~~~~~v~~~~nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~~   84 (346)
T COG2706           5 VYIGTYTKRESQGIYVFNLDTKTGELSLLQLVAELGNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDDGRLTFLNRQ   84 (346)
T ss_pred             EEEeeecccCCCceEEEEEeCcccccchhhhccccCCCceEEECCCCCEEEEEEecCCcCcEEEEEEcCCCCeEEEeecc
Confidence            455554    467999988732  221 122345567889999999988777644   47777777765  332  2222


Q ss_pred             eCCcccEEEEEECCCCCeEEEEecCCCeEEEEecCC-cceeeeecCCCCCCCCCCccCCCCcceEEEEECCCCCEEEEec
Q 021247           99 EASPSEVWQMQFDPKGTTLAVAGGGSASVKLWDTAT-WNLIATLSIPRPEGLKPTDKSSSKKFVLSVAWSPDGRRIACGS  177 (315)
Q Consensus        99 ~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~~d~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~s  177 (315)
                      .....+...+++++++++++++.-..+.|.++-++. +.+......-...+..+. ..+....+....+.|++++|++..
T Consensus        85 ~~~g~~p~yvsvd~~g~~vf~AnY~~g~v~v~p~~~dG~l~~~v~~~~h~g~~p~-~rQ~~~h~H~a~~tP~~~~l~v~D  163 (346)
T COG2706          85 TLPGSPPCYVSVDEDGRFVFVANYHSGSVSVYPLQADGSLQPVVQVVKHTGSGPH-ERQESPHVHSANFTPDGRYLVVPD  163 (346)
T ss_pred             ccCCCCCeEEEECCCCCEEEEEEccCceEEEEEcccCCccccceeeeecCCCCCC-ccccCCccceeeeCCCCCEEEEee
Confidence            222334478899999998888777789999998865 322211111111111111 112223366788999999998775


Q ss_pred             CC-CcEEEEEcccceeeeeec---CCccceEEEEEcCCCCcEEEEEeCCCeEEEEeCCCC--e--eEEEee------ccc
Q 021247          178 MD-GTISVFDVTRAKFLHHLE---GHFMPVRSLVYSPVDPRVLFSASDDTHVHMYDAEGK--S--LVTAMS------GHA  243 (315)
Q Consensus       178 ~d-g~i~i~d~~~~~~~~~~~---~~~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~--~--~~~~~~------~~~  243 (315)
                      .. -+|.+|++..++....-.   ......+-|.|+|.+.-..+..=.+++|.+|.....  +  .++.+.      ...
T Consensus       164 LG~Dri~~y~~~dg~L~~~~~~~v~~G~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ~i~tlP~dF~g~  243 (346)
T COG2706         164 LGTDRIFLYDLDDGKLTPADPAEVKPGAGPRHIVFHPNGKYAYLVNELNSTVDVLEYNPAVGKFEELQTIDTLPEDFTGT  243 (346)
T ss_pred             cCCceEEEEEcccCccccccccccCCCCCcceEEEcCCCcEEEEEeccCCEEEEEEEcCCCceEEEeeeeccCccccCCC
Confidence            32 279999998665432111   223456899999954433445556899999987652  2  122111      124


Q ss_pred             ccEEEEEEcCCCCeEEEEeC-CCcEEEEecCc--cc--eehcccccccceEEEEEeeCCCEEEEEeCC-CcEEEeec
Q 021247          244 SWVLSVDASPDGAAITTGSS-DRTVKLWDLNM--RA--AMQSMTNHTDQVWGVSFRPLGGRVVSVSDD-KSISLYEY  314 (315)
Q Consensus       244 ~~i~~~~~~~~~~~l~s~~~-d~~i~iwd~~~--~~--~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d-~~i~i~~~  314 (315)
                      .+..+|.++|+|++|.++.. ...|.+|.+..  ++  .+.....+........|+|.|++|+++.++ .+|.+|..
T Consensus       244 ~~~aaIhis~dGrFLYasNRg~dsI~~f~V~~~~g~L~~~~~~~teg~~PR~F~i~~~g~~Liaa~q~sd~i~vf~~  320 (346)
T COG2706         244 NWAAAIHISPDGRFLYASNRGHDSIAVFSVDPDGGKLELVGITPTEGQFPRDFNINPSGRFLIAANQKSDNITVFER  320 (346)
T ss_pred             CceeEEEECCCCCEEEEecCCCCeEEEEEEcCCCCEEEEEEEeccCCcCCccceeCCCCCEEEEEccCCCcEEEEEE
Confidence            56778999999999876643 23577787653  22  222333445557889999999999888776 57888764

>PLN02919 haloacid dehalogenase-like hydrolase family protein

Probab=99.43  E-value=1.1e-09  Score=104.30  Aligned_cols=252  Identities=14%  Similarity=0.155  Sum_probs=160.2

Q ss_pred             EEEEeecCCCCCcEEEEeeCCCcEEEEcCCCCcceeeccc--------------cccceEEEEeCCCCCEE-EEeeCCCe
Q 021247           19 AVTWVPATETRPALLLTGSLDETVKLWRPDDMQLERTNTG--------------HCLGVVSVAAHPSGIIA-ASASLDSF   83 (315)
Q Consensus        19 ~v~~~~~~~~~~~~l~sgs~d~~v~~w~~~~~~~~~~~~~--------------h~~~v~~~~~~~~g~~l-~s~~~d~~   83 (315)
                      .+++.+...   .++++-+.++.|++++.+.. ....+.+              +-.....+++++++..| ++-...+.
T Consensus       572 gvavd~~~g---~lyVaDs~n~rI~v~d~~G~-~i~~ig~~g~~G~~dG~~~~a~f~~P~GIavd~~gn~LYVaDt~n~~  647 (1057)
T PLN02919        572 KLAIDLLNN---RLFISDSNHNRIVVTDLDGN-FIVQIGSTGEEGLRDGSFEDATFNRPQGLAYNAKKNLLYVADTENHA  647 (1057)
T ss_pred             eEEEECCCC---eEEEEECCCCeEEEEeCCCC-EEEEEccCCCcCCCCCchhccccCCCcEEEEeCCCCEEEEEeCCCce
Confidence            566655322   26777778889999987543 3222221              11235778898887754 44445678


Q ss_pred             EEEEECCCCceeEEeeCC-----------------cccEEEEEECCCCCeEEEEecCCCeEEEEecCCcceeeeecCCCC
Q 021247           84 VRVFDVDTNASIATLEAS-----------------PSEVWQMQFDPKGTTLAVAGGGSASVKLWDTATWNLIATLSIPRP  146 (315)
Q Consensus        84 i~~w~~~~~~~~~~~~~~-----------------~~~v~~~~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~  146 (315)
                      |+++|+.++. +.++...                 -...+.++++|++..++++...+++|++||..++... .+.....
T Consensus       648 Ir~id~~~~~-V~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~~~~I~v~d~~~g~v~-~~~G~G~  725 (1057)
T PLN02919        648 LREIDFVNET-VRTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAGQHQIWEYNISDGVTR-VFSGDGY  725 (1057)
T ss_pred             EEEEecCCCE-EEEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECCCCeEEEEECCCCeEE-EEecCCc
Confidence            9999987754 3333110                 1234678999977778888888999999998765432 2211100


Q ss_pred             C-CC-CCCccCCCCcceEEEEECCCCCEE-EEecCCCcEEEEEcccceeeeeecC---------------------Cccc
Q 021247          147 E-GL-KPTDKSSSKKFVLSVAWSPDGRRI-ACGSMDGTISVFDVTRAKFLHHLEG---------------------HFMP  202 (315)
Q Consensus       147 ~-~~-~~~~~~~~~~~i~~~~~~~~~~~l-~~~s~dg~i~i~d~~~~~~~~~~~~---------------------~~~~  202 (315)
                      . .. ........-.....++++|+++.| ++-+.++.|++||+.++.......+                     ....
T Consensus       726 ~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~  805 (1057)
T PLN02919        726 ERNLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQH  805 (1057)
T ss_pred             cccCCCCccccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCcEEEEEecccccCcccccccCCCCchhhhhccC
Confidence            0 00 000000111235689999998844 5667789999999976543211000                     0112


Q ss_pred             eEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCeeEEEee-------------cccccEEEEEEcCCCCeEEEEeCCCcEEE
Q 021247          203 VRSLVYSPVDPRVLFSASDDTHVHMYDAEGKSLVTAMS-------------GHASWVLSVDASPDGAAITTGSSDRTVKL  269 (315)
Q Consensus       203 v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~-------------~~~~~i~~~~~~~~~~~l~s~~~d~~i~i  269 (315)
                      ...+++++ ++.++++-..++.|++||..++.......             ++-.....++++++|+++++-+.+++|++
T Consensus       806 P~Gvavd~-dG~LYVADs~N~rIrviD~~tg~v~tiaG~G~~G~~dG~~~~a~l~~P~GIavd~dG~lyVaDt~Nn~Irv  884 (1057)
T PLN02919        806 PLGVLCAK-DGQIYVADSYNHKIKKLDPATKRVTTLAGTGKAGFKDGKALKAQLSEPAGLALGENGRLFVADTNNSLIRY  884 (1057)
T ss_pred             CceeeEeC-CCcEEEEECCCCEEEEEECCCCeEEEEeccCCcCCCCCcccccccCCceEEEEeCCCCEEEEECCCCEEEE
Confidence            35788887 56788888899999999998775543221             11235678999999999999999999999


Q ss_pred             EecCccce
Q 021247          270 WDLNMRAA  277 (315)
Q Consensus       270 wd~~~~~~  277 (315)
                      ||+++++.
T Consensus       885 id~~~~~~  892 (1057)
T PLN02919        885 LDLNKGEA  892 (1057)
T ss_pred             EECCCCcc
Confidence            99987653

>PRK01029 tolB translocation protein TolB; Provisional

Probab=99.43  E-value=1.5e-10  Score=100.35  Aligned_cols=217  Identities=17%  Similarity=0.115  Sum_probs=126.2

Q ss_pred             CeEEEEECCCCceeEEeeCCcccEEEEEECCCCCe--EEEEecCC--CeEEEEecCCcceeeeecCCCCCCCCCCccCCC
Q 021247           82 SFVRVFDVDTNASIATLEASPSEVWQMQFDPKGTT--LAVAGGGS--ASVKLWDTATWNLIATLSIPRPEGLKPTDKSSS  157 (315)
Q Consensus        82 ~~i~~w~~~~~~~~~~~~~~~~~v~~~~~~~~~~~--~~~~~~~d--~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~  157 (315)
                      +.|.+.|...+.. ..+.........-+|+|+|+.  +++....+  .+|.+.++.+++.......+             
T Consensus       165 ~~l~~~d~dG~~~-~~lt~~~~~~~sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~~~~lt~~~-------------  230 (428)
T PRK01029        165 GELWSVDYDGQNL-RPLTQEHSLSITPTWMHIGSGFPYLYVSYKLGVPKIFLGSLENPAGKKILALQ-------------  230 (428)
T ss_pred             ceEEEEcCCCCCc-eEcccCCCCcccceEccCCCceEEEEEEccCCCceEEEEECCCCCceEeecCC-------------
Confidence            3577777665443 333334445667789999875  33343333  46888888766543322111             


Q ss_pred             CcceEEEEECCCCCEEEEecC-CC--c--EEEEEcccc---eeeeeecCCccceEEEEEcCCCCcEEEEEeCCCe--EEE
Q 021247          158 KKFVLSVAWSPDGRRIACGSM-DG--T--ISVFDVTRA---KFLHHLEGHFMPVRSLVYSPVDPRVLFSASDDTH--VHM  227 (315)
Q Consensus       158 ~~~i~~~~~~~~~~~l~~~s~-dg--~--i~i~d~~~~---~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~--i~~  227 (315)
                       ......+|+|||+.|+..+. +|  .  +..|++..+   +................|+|++..++++...++.  |.+
T Consensus       231 -g~~~~p~wSPDG~~Laf~s~~~g~~di~~~~~~~~~g~~g~~~~lt~~~~~~~~~p~wSPDG~~Laf~s~~~g~~~ly~  309 (428)
T PRK01029        231 -GNQLMPTFSPRKKLLAFISDRYGNPDLFIQSFSLETGAIGKPRRLLNEAFGTQGNPSFSPDGTRLVFVSNKDGRPRIYI  309 (428)
T ss_pred             -CCccceEECCCCCEEEEEECCCCCcceeEEEeecccCCCCcceEeecCCCCCcCCeEECCCCCEEEEEECCCCCceEEE
Confidence             11335789999998876442 23  2  344676542   2222222222334567999955545555555665  444


Q ss_pred             EeCCC-CeeEEEeecccccEEEEEEcCCCCeEEEEeCC---CcEEEEecCccceehcccccccceEEEEEeeCCCEEEEE
Q 021247          228 YDAEG-KSLVTAMSGHASWVLSVDASPDGAAITTGSSD---RTVKLWDLNMRAAMQSMTNHTDQVWGVSFRPLGGRVVSV  303 (315)
Q Consensus       228 wd~~~-~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~d---~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~  303 (315)
                      ++... +.....+..+...+....|+|+|+.|+..+.+   ..|.+||+..++... +......+....|+|||++|+..
T Consensus       310 ~~~~~~g~~~~~lt~~~~~~~~p~wSPDG~~Laf~~~~~g~~~I~v~dl~~g~~~~-Lt~~~~~~~~p~wSpDG~~L~f~  388 (428)
T PRK01029        310 MQIDPEGQSPRLLTKKYRNSSCPAWSPDGKKIAFCSVIKGVRQICVYDLATGRDYQ-LTTSPENKESPSWAIDSLHLVYS  388 (428)
T ss_pred             EECcccccceEEeccCCCCccceeECCCCCEEEEEEcCCCCcEEEEEECCCCCeEE-ccCCCCCccceEECCCCCEEEEE
Confidence            44432 22234444444566788999999988765543   368999998776543 32223356778999999988754


Q ss_pred             eC-C--CcEEEeec
Q 021247          304 SD-D--KSISLYEY  314 (315)
Q Consensus       304 ~~-d--~~i~i~~~  314 (315)
                      +. +  ..|.++++
T Consensus       389 ~~~~g~~~L~~vdl  402 (428)
T PRK01029        389 AGNSNESELYLISL  402 (428)
T ss_pred             ECCCCCceEEEEEC
Confidence            33 3  35655554

>PRK01029 tolB translocation protein TolB; Provisional

Probab=99.41  E-value=5.1e-10  Score=97.06  Aligned_cols=241  Identities=13%  Similarity=0.063  Sum_probs=138.9

Q ss_pred             cEEEEcCCCCcceeeccccccceEEEEeCCCCCE--E-EEeeCC--CeEEEEECCCCceeEEeeCCcccEEEEEECCCCC
Q 021247           41 TVKLWRPDDMQLERTNTGHCLGVVSVAAHPSGII--A-ASASLD--SFVRVFDVDTNASIATLEASPSEVWQMQFDPKGT  115 (315)
Q Consensus        41 ~v~~w~~~~~~~~~~~~~h~~~v~~~~~~~~g~~--l-~s~~~d--~~i~~w~~~~~~~~~~~~~~~~~v~~~~~~~~~~  115 (315)
                      .|.+.|.+..... .+........+-.|+|+|..  + .....+  ..|++.++.+++... +...++.....+|+|+|+
T Consensus       166 ~l~~~d~dG~~~~-~lt~~~~~~~sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~~~~-lt~~~g~~~~p~wSPDG~  243 (428)
T PRK01029        166 ELWSVDYDGQNLR-PLTQEHSLSITPTWMHIGSGFPYLYVSYKLGVPKIFLGSLENPAGKK-ILALQGNQLMPTFSPRKK  243 (428)
T ss_pred             eEEEEcCCCCCce-EcccCCCCcccceEccCCCceEEEEEEccCCCceEEEEECCCCCceE-eecCCCCccceEECCCCC
Confidence            4556666544332 23333345567789999974  2 233333  458888888775433 222344455689999999


Q ss_pred             eEEEEecCCC----eEEEEecCCcc--eeeeecCCCCCCCCCCccCCCCcceEEEEECCCCCEEEEec-CCCc--EEEEE
Q 021247          116 TLAVAGGGSA----SVKLWDTATWN--LIATLSIPRPEGLKPTDKSSSKKFVLSVAWSPDGRRIACGS-MDGT--ISVFD  186 (315)
Q Consensus       116 ~~~~~~~~d~----~i~~~d~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~s-~dg~--i~i~d  186 (315)
                      .++++...++    .+..|++..+.  ....+.            ..........+|+|||+.|+..+ .+|.  |++++
T Consensus       244 ~Laf~s~~~g~~di~~~~~~~~~g~~g~~~~lt------------~~~~~~~~~p~wSPDG~~Laf~s~~~g~~~ly~~~  311 (428)
T PRK01029        244 LLAFISDRYGNPDLFIQSFSLETGAIGKPRRLL------------NEAFGTQGNPSFSPDGTRLVFVSNKDGRPRIYIMQ  311 (428)
T ss_pred             EEEEEECCCCCcceeEEEeecccCCCCcceEee------------cCCCCCcCCeEECCCCCEEEEEECCCCCceEEEEE
Confidence            8887764433    34446655321  111110            00111234679999999887654 4564  44445


Q ss_pred             ccc-ceeeeeecCCccceEEEEEcCCCCcEEEEEeCC--CeEEEEeCCCCeeEEEeecccccEEEEEEcCCCCeEEEEeC
Q 021247          187 VTR-AKFLHHLEGHFMPVRSLVYSPVDPRVLFSASDD--THVHMYDAEGKSLVTAMSGHASWVLSVDASPDGAAITTGSS  263 (315)
Q Consensus       187 ~~~-~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d--~~i~~wd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~  263 (315)
                      +.. +.....+..+...+....|+|++..++++...+  ..|.+||..+++.... ......+....|+|+|+.|+..+.
T Consensus       312 ~~~~g~~~~~lt~~~~~~~~p~wSPDG~~Laf~~~~~g~~~I~v~dl~~g~~~~L-t~~~~~~~~p~wSpDG~~L~f~~~  390 (428)
T PRK01029        312 IDPEGQSPRLLTKKYRNSSCPAWSPDGKKIAFCSVIKGVRQICVYDLATGRDYQL-TTSPENKESPSWAIDSLHLVYSAG  390 (428)
T ss_pred             CcccccceEEeccCCCCccceeECCCCCEEEEEEcCCCCcEEEEEECCCCCeEEc-cCCCCCccceEECCCCCEEEEEEC
Confidence            432 222334444445667889999554444444433  4699999988765433 322334667899999987764332


Q ss_pred             ---CCcEEEEecCccceehcccccccceEEEEEeeCC
Q 021247          264 ---DRTVKLWDLNMRAAMQSMTNHTDQVWGVSFRPLG  297 (315)
Q Consensus       264 ---d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~  297 (315)
                         ...|.++|+..++..... ...+.+...+|+|..
T Consensus       391 ~~g~~~L~~vdl~~g~~~~Lt-~~~g~~~~p~Ws~~~  426 (428)
T PRK01029        391 NSNESELYLISLITKKTRKIV-IGSGEKRFPSWGAFP  426 (428)
T ss_pred             CCCCceEEEEECCCCCEEEee-cCCCcccCceecCCC
Confidence               346888898776543332 233455667888753

>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]

Probab=99.41  E-value=3.4e-12  Score=119.92  Aligned_cols=214  Identities=15%  Similarity=0.222  Sum_probs=161.2

Q ss_pred             CCCEEEEeeCCCeEEEEECCCCceeEEeeCCcccEEEEEECCCCCeEEEEecCCCeEEEEecCCcceeeeecCCCCCCCC
Q 021247           71 SGIIAASASLDSFVRVFDVDTNASIATLEASPSEVWQMQFDPKGTTLAVAGGGSASVKLWDTATWNLIATLSIPRPEGLK  150 (315)
Q Consensus        71 ~g~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~  150 (315)
                      .++.+.....++..--|..+.+..  .++.+-..|.++.-||...+ +++|+.||.+++|.-..+..+..+..       
T Consensus      2179 ~s~~~~~~n~~~~~~tq~~~~~~~--~~k~~v~~v~r~~sHp~~~~-Yltgs~dgsv~~~~w~~~~~v~~~rt------- 2248 (2439)
T KOG1064|consen 2179 FSNRFTPSNLPWLGSTQTSRGASV--MIKHPVENVRRMTSHPSDPY-YLTGSQDGSVRMFEWGHGQQVVCFRT------- 2248 (2439)
T ss_pred             ccccCCcccCCccccceeccccee--EeecccCceeeecCCCCCce-EEecCCCceEEEEeccCCCeEEEeec-------
Confidence            344455455555554455443322  23445566788888888775 57899999999999877666655432       


Q ss_pred             CCccCCCCcceEEEEECCCCCEEEEecCCCcEEEEEcccceeeeeecCCccceEEEEEcCCCCcEEEEEe---CCCeEEE
Q 021247          151 PTDKSSSKKFVLSVAWSPDGRRIACGSMDGTISVFDVTRAKFLHHLEGHFMPVRSLVYSPVDPRVLFSAS---DDTHVHM  227 (315)
Q Consensus       151 ~~~~~~~~~~i~~~~~~~~~~~l~~~s~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~---~d~~i~~  227 (315)
                           .....++.+.|+.+|+.+..+-.||.+.+|... .+.....+.|+....++.|-.   ..+++++   +++.+.+
T Consensus      2249 -----~g~s~vtr~~f~~qGnk~~i~d~dg~l~l~q~~-pk~~~s~qchnk~~~Df~Fi~---s~~~tag~s~d~~n~~l 2319 (2439)
T KOG1064|consen 2249 -----AGNSRVTRSRFNHQGNKFGIVDGDGDLSLWQAS-PKPYTSWQCHNKALSDFRFIG---SLLATAGRSSDNRNVCL 2319 (2439)
T ss_pred             -----cCcchhhhhhhcccCCceeeeccCCceeecccC-CcceeccccCCccccceeeee---hhhhccccCCCCCcccc
Confidence                 122457889999999999999999999999986 566677778888888888863   4566654   5788999


Q ss_pred             EeCCC---CeeEEEeecccccEEEEEEcCCCCeEEEEeCCCcEEEEecCccceehcccccccceEEEEEeeCCCEEEEEe
Q 021247          228 YDAEG---KSLVTAMSGHASWVLSVDASPDGAAITTGSSDRTVKLWDLNMRAAMQSMTNHTDQVWGVSFRPLGGRVVSVS  304 (315)
Q Consensus       228 wd~~~---~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~  304 (315)
                      ||..-   ..++.  ..|.+..+++++-|..++|++||.+|.|++||++.+...++++.         +. -..++++++
T Consensus      2320 wDtl~~~~~s~v~--~~H~~gaT~l~~~P~~qllisggr~G~v~l~D~rqrql~h~~~~---------~~-~~~~f~~~s 2387 (2439)
T KOG1064|consen 2320 WDTLLPPMNSLVH--TCHDGGATVLAYAPKHQLLISGGRKGEVCLFDIRQRQLRHTFQA---------LD-TREYFVTGS 2387 (2439)
T ss_pred             hhcccCcccceee--eecCCCceEEEEcCcceEEEecCCcCcEEEeehHHHHHHHHhhh---------hh-hhheeeccC
Confidence            99642   23443  78999999999999999999999999999999999887777654         33 356899999


Q ss_pred             CCCcEEEeecC
Q 021247          305 DDKSISLYEYS  315 (315)
Q Consensus       305 ~d~~i~i~~~~  315 (315)
                      ..|.|+||.++
T Consensus      2388 s~g~ikIw~~s 2398 (2439)
T KOG1064|consen 2388 SEGNIKIWRLS 2398 (2439)
T ss_pred             cccceEEEEcc
Confidence            99999999874

>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]

Probab=99.41  E-value=2e-11  Score=109.39  Aligned_cols=186  Identities=18%  Similarity=0.264  Sum_probs=142.2

Q ss_pred             CCCEEEEeeCCCeEEEEECCCCceeEEeeCCccc----EEEEEECCCCCeEEEEecCCCeEEEEecCCcceeeeecCCCC
Q 021247           71 SGIIAASASLDSFVRVFDVDTNASIATLEASPSE----VWQMQFDPKGTTLAVAGGGSASVKLWDTATWNLIATLSIPRP  146 (315)
Q Consensus        71 ~g~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~----v~~~~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~  146 (315)
                      ....++.+..+..+-+||...+.....+......    ...+.++++ +..+++|+.-++|.+|+...            
T Consensus        98 e~k~i~l~~~~ns~~i~d~~~~~~~~~i~~~er~~l~~~~~~g~s~~-~~~i~~gsv~~~iivW~~~~------------  164 (967)
T KOG0974|consen   98 ENKKIALVTSRNSLLIRDSKNSSVLSKIQSDERCTLYSSLIIGDSAE-ELYIASGSVFGEIIVWKPHE------------  164 (967)
T ss_pred             hcceEEEEEcCceEEEEecccCceehhcCCCceEEEEeEEEEeccCc-EEEEEeccccccEEEEeccc------------
Confidence            4557777788888999998877655444332211    112223333 33456778889999998752            


Q ss_pred             CCCCCCccCCCCcceEEEEECCCCCEEEEecCCCcEEEEEcccceeee-eecCCccceEEEEEcCCCCcEEEEEeCCCeE
Q 021247          147 EGLKPTDKSSSKKFVLSVAWSPDGRRIACGSMDGTISVFDVTRAKFLH-HLEGHFMPVRSLVYSPVDPRVLFSASDDTHV  225 (315)
Q Consensus       147 ~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~s~dg~i~i~d~~~~~~~~-~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i  225 (315)
                       ..++....+|...|-.+.|+.+|+++++.|+|.++++|++.+.+... ..-+|...+..+.|+|.   .+++++.|.+.
T Consensus       165 -dn~p~~l~GHeG~iF~i~~s~dg~~i~s~SdDRsiRlW~i~s~~~~~~~~fgHsaRvw~~~~~~n---~i~t~gedctc  240 (967)
T KOG0974|consen  165 -DNKPIRLKGHEGSIFSIVTSLDGRYIASVSDDRSIRLWPIDSREVLGCTGFGHSARVWACCFLPN---RIITVGEDCTC  240 (967)
T ss_pred             -cCCcceecccCCceEEEEEccCCcEEEEEecCcceeeeecccccccCcccccccceeEEEEeccc---eeEEeccceEE
Confidence             11222456788889999999999999999999999999999887765 66789999999999984   89999999999


Q ss_pred             EEEeCCCCeeEEEeeccc-ccEEEEEEcCCCCeEEEEeCCCcEEEEecCc
Q 021247          226 HMYDAEGKSLVTAMSGHA-SWVLSVDASPDGAAITTGSSDRTVKLWDLNM  274 (315)
Q Consensus       226 ~~wd~~~~~~~~~~~~~~-~~i~~~~~~~~~~~l~s~~~d~~i~iwd~~~  274 (315)
                      ++|+.... .+..+.+|. ..|+.++..++....+|++.|+.+++|++..
T Consensus       241 rvW~~~~~-~l~~y~~h~g~~iw~~~~~~~~~~~vT~g~Ds~lk~~~l~~  289 (967)
T KOG0974|consen  241 RVWGVNGT-QLEVYDEHSGKGIWKIAVPIGVIIKVTGGNDSTLKLWDLNG  289 (967)
T ss_pred             EEEecccc-eehhhhhhhhcceeEEEEcCCceEEEeeccCcchhhhhhhc
Confidence            99976544 334667774 4599999999999999999999999999854

>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]

Probab=99.39  E-value=5.3e-10  Score=94.72  Aligned_cols=191  Identities=20%  Similarity=0.228  Sum_probs=148.2

Q ss_pred             CCCCEEEEeeCCCeEEEEECCCCceeEEeeCC---cccEEEEEE------CC-------------CCCeEEEEecCCCeE
Q 021247           70 PSGIIAASASLDSFVRVFDVDTNASIATLEAS---PSEVWQMQF------DP-------------KGTTLAVAGGGSASV  127 (315)
Q Consensus        70 ~~g~~l~s~~~d~~i~~w~~~~~~~~~~~~~~---~~~v~~~~~------~~-------------~~~~~~~~~~~d~~i  127 (315)
                      |...+++....||.+|+|+...++..+.+...   .+...+..|      +|             .+...++-|...|.|
T Consensus         3 ~~~~~~A~~~~~g~l~iw~t~~~~~~~e~~p~~~~s~t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~t~~lvlgt~~g~v   82 (541)
T KOG4547|consen    3 PALDYFALSTGDGRLRIWDTAKNQLQQEFAPIASLSGTCTYTKWGLSADYSPMKWLSLEKAKKASLDTSMLVLGTPQGSV   82 (541)
T ss_pred             chhheEeecCCCCeEEEEEccCceeeeeeccchhccCcceeEEEEEEeccchHHHHhHHHHhhccCCceEEEeecCCccE
Confidence            45678999999999999999988766555321   122222222      23             133455667778999


Q ss_pred             EEEecCCcceeeeecCCCCCCCCCCccCCCCcceEEEEECCCCCEEEEecCCCcEEEEEcccceeeeeecCCccceEEEE
Q 021247          128 KLWDTATWNLIATLSIPRPEGLKPTDKSSSKKFVLSVAWSPDGRRIACGSMDGTISVFDVTRAKFLHHLEGHFMPVRSLV  207 (315)
Q Consensus       128 ~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~s~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~  207 (315)
                      .+|+...++....+...           .|...+.++.++.+-..|.+++.|..+..|+....+.++........+.++.
T Consensus        83 ~~ys~~~g~it~~~st~-----------~h~~~v~~~~~~~~~~ciyS~~ad~~v~~~~~~~~~~~~~~~~~~~~~~sl~  151 (541)
T KOG4547|consen   83 LLYSVAGGEITAKLSTD-----------KHYGNVNEILDAQRLGCIYSVGADLKVVYILEKEKVIIRIWKEQKPLVSSLC  151 (541)
T ss_pred             EEEEecCCeEEEEEecC-----------CCCCcceeeecccccCceEecCCceeEEEEecccceeeeeeccCCCccceEE
Confidence            99999988877766432           2344588899999889999999999999999999999999998888899999


Q ss_pred             EcCCCCcEEEEEeCCCeEEEEeCCCCeeEEEeecccccEEEEEEcCC-----CCeE-EEEeCCCcEEEEecCc
Q 021247          208 YSPVDPRVLFSASDDTHVHMYDAEGKSLVTAMSGHASWVLSVDASPD-----GAAI-TTGSSDRTVKLWDLNM  274 (315)
Q Consensus       208 ~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~i~~~~~~~~-----~~~l-~s~~~d~~i~iwd~~~  274 (315)
                      .+|+ +..+++++  +.|++||+++++.+..+.+|.++|..+.|--.     |.++ .+...+.-+.+|-+..
T Consensus       152 is~D-~~~l~~as--~~ik~~~~~~kevv~~ftgh~s~v~t~~f~~~~~g~~G~~vLssa~~~r~i~~w~v~~  221 (541)
T KOG4547|consen  152 ISPD-GKILLTAS--RQIKVLDIETKEVVITFTGHGSPVRTLSFTTLIDGIIGKYVLSSAAAERGITVWVVEK  221 (541)
T ss_pred             EcCC-CCEEEecc--ceEEEEEccCceEEEEecCCCcceEEEEEEEeccccccceeeeccccccceeEEEEEc
Confidence            9994 77777766  58999999999999999999999999998776     5554 5556666788887654

>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL

Probab=99.38  E-value=2.5e-09  Score=91.89  Aligned_cols=265  Identities=12%  Similarity=0.093  Sum_probs=155.0

Q ss_pred             cEEEEeeCCCcEEEEcCCCCcceeeccccccceEEEEeCCCCCEEEEeeCCCeEEEEECCCCceeEEeeCCcccEE----
Q 021247           31 ALLLTGSLDETVKLWRPDDMQLERTNTGHCLGVVSVAAHPSGIIAASASLDSFVRVFDVDTNASIATLEASPSEVW----  106 (315)
Q Consensus        31 ~~l~sgs~d~~v~~w~~~~~~~~~~~~~h~~~v~~~~~~~~g~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~v~----  106 (315)
                      ..++.++.|+.+..+|.++++........ ..+.+.... .+..++.+..++.++.||.++++.+...........    
T Consensus       106 ~~v~v~~~~g~l~ald~~tG~~~W~~~~~-~~~~~~p~v-~~~~v~v~~~~g~l~a~d~~tG~~~W~~~~~~~~~~~~~~  183 (377)
T TIGR03300       106 GLVFVGTEKGEVIALDAEDGKELWRAKLS-SEVLSPPLV-ANGLVVVRTNDGRLTALDAATGERLWTYSRVTPALTLRGS  183 (377)
T ss_pred             CEEEEEcCCCEEEEEECCCCcEeeeeccC-ceeecCCEE-ECCEEEEECCCCeEEEEEcCCCceeeEEccCCCceeecCC
Confidence            35667777888888887777665443211 111111111 234556677789999999999887766544322111    


Q ss_pred             -EEEECCCCCeEEEEecCCCeEEEEecCCcceeeeecCCCCCCCCCCccCCCCcceEEEEECCCCCEEEEecCCCcEEEE
Q 021247          107 -QMQFDPKGTTLAVAGGGSASVKLWDTATWNLIATLSIPRPEGLKPTDKSSSKKFVLSVAWSPDGRRIACGSMDGTISVF  185 (315)
Q Consensus       107 -~~~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~s~dg~i~i~  185 (315)
                       .....  +. .++.+..++.+..+|.++++.+.......+.+........  .......+  .+..++.++.+|.++.+
T Consensus       184 ~sp~~~--~~-~v~~~~~~g~v~ald~~tG~~~W~~~~~~~~g~~~~~~~~--~~~~~p~~--~~~~vy~~~~~g~l~a~  256 (377)
T TIGR03300       184 ASPVIA--DG-GVLVGFAGGKLVALDLQTGQPLWEQRVALPKGRTELERLV--DVDGDPVV--DGGQVYAVSYQGRVAAL  256 (377)
T ss_pred             CCCEEE--CC-EEEEECCCCEEEEEEccCCCEeeeeccccCCCCCchhhhh--ccCCccEE--ECCEEEEEEcCCEEEEE
Confidence             00111  12 3456677899999999998877655432211100000000  00001111  24577778889999999


Q ss_pred             EcccceeeeeecCCccceEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCeeEEEeecccc-cEEEEEEcCCCCeEEEEeCC
Q 021247          186 DVTRAKFLHHLEGHFMPVRSLVYSPVDPRVLFSASDDTHVHMYDAEGKSLVTAMSGHAS-WVLSVDASPDGAAITTGSSD  264 (315)
Q Consensus       186 d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~-~i~~~~~~~~~~~l~s~~~d  264 (315)
                      |+.+++.+-.....  .......   .+..++.++.++.+..+|..+++.+-....... .......  .+..+++++.+
T Consensus       257 d~~tG~~~W~~~~~--~~~~p~~---~~~~vyv~~~~G~l~~~d~~tG~~~W~~~~~~~~~~ssp~i--~g~~l~~~~~~  329 (377)
T TIGR03300       257 DLRSGRVLWKRDAS--SYQGPAV---DDNRLYVTDADGVVVALDRRSGSELWKNDELKYRQLTAPAV--VGGYLVVGDFE  329 (377)
T ss_pred             ECCCCcEEEeeccC--CccCceE---eCCEEEEECCCCeEEEEECCCCcEEEccccccCCccccCEE--ECCEEEEEeCC
Confidence            99988765444311  1111111   234677778899999999988866533321111 1111112  35688899999


Q ss_pred             CcEEEEecCccceehcccccccceEEEEEeeCCCEEEEEeCCCcEEEe
Q 021247          265 RTVKLWDLNMRAAMQSMTNHTDQVWGVSFRPLGGRVVSVSDDKSISLY  312 (315)
Q Consensus       265 ~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~i~i~  312 (315)
                      |.|+++|..+++.+..+..+...+++--... ++.|+.++.||.|..|
T Consensus       330 G~l~~~d~~tG~~~~~~~~~~~~~~~sp~~~-~~~l~v~~~dG~l~~~  376 (377)
T TIGR03300       330 GYLHWLSREDGSFVARLKTDGSGIASPPVVV-GDGLLVQTRDGDLYAF  376 (377)
T ss_pred             CEEEEEECCCCCEEEEEEcCCCccccCCEEE-CCEEEEEeCCceEEEe
Confidence            9999999999988777665554433322222 3569999999999776

Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.

>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]

Probab=99.37  E-value=6.8e-11  Score=93.83  Aligned_cols=251  Identities=18%  Similarity=0.237  Sum_probs=171.4

Q ss_pred             cceeeccccccceEEEEeCCCCCEEEEeeCCCeEEEEECCCCcee-E-EeeCCcccEEEEEECCCCCeEEEEecCCCeEE
Q 021247           51 QLERTNTGHCLGVVSVAAHPSGIIAASASLDSFVRVFDVDTNASI-A-TLEASPSEVWQMQFDPKGTTLAVAGGGSASVK  128 (315)
Q Consensus        51 ~~~~~~~~h~~~v~~~~~~~~g~~l~s~~~d~~i~~w~~~~~~~~-~-~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~  128 (315)
                      .+.+.+.||.+.++....-|-..-+.+++.|.++|+|-..+.... . ..-..+.++.++.+++... .++.|-.+|++.
T Consensus        15 ~ll~~~eG~~d~vn~~~l~~~e~gv~~~s~drtvrv~lkrds~q~wpsI~~~mP~~~~~~~y~~e~~-~L~vg~~ngtvt   93 (404)
T KOG1409|consen   15 ELLSKIEGSQDDVNAAILIPKEEGVISVSEDRTVRVWLKRDSGQYWPSIYHYMPSPCSAMEYVSESR-RLYVGQDNGTVT   93 (404)
T ss_pred             hhhhhhcCchhhhhhheeccCCCCeEEccccceeeeEEeccccccCchhhhhCCCCceEeeeeccce-EEEEEEecceEE
Confidence            355667899999998888888888999999999999976553221 1 2223467788999988765 456788888888


Q ss_pred             EEecCCcceeeeecCCCCCCCCCCccCCCCcceEEEEECCCCCEEEEecCCCcEEEEEcccceeeeeecCCccceEEEEE
Q 021247          129 LWDTATWNLIATLSIPRPEGLKPTDKSSSKKFVLSVAWSPDGRRIACGSMDGTISVFDVTRAKFLHHLEGHFMPVRSLVY  208 (315)
Q Consensus       129 ~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~s~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~  208 (315)
                      -+.+...  ..+..       .+.....|..++..+.|+....++++.+.|..+..--.+.+..+....-.. +-.+..+
T Consensus        94 efs~sed--fnkm~-------~~r~~~~h~~~v~~~if~~~~e~V~s~~~dk~~~~hc~e~~~~lg~Y~~~~-~~t~~~~  163 (404)
T KOG1409|consen   94 EFALSED--FNKMT-------FLKDYLAHQARVSAIVFSLTHEWVLSTGKDKQFAWHCTESGNRLGGYNFET-PASALQF  163 (404)
T ss_pred             EEEhhhh--hhhcc-------hhhhhhhhhcceeeEEecCCceeEEEeccccceEEEeeccCCcccceEeec-cCCCCce
Confidence            7765421  00010       111123456678889999888899999988776554444443322211000 0001111


Q ss_pred             cCCCCcEEEEEeCCCeEEEEe--CCCCeeEEEeecccccEEEEEEcCCCCeEEEEeCCCcEEEEecCccce-ehcccccc
Q 021247          209 SPVDPRVLFSASDDTHVHMYD--AEGKSLVTAMSGHASWVLSVDASPDGAAITTGSSDRTVKLWDLNMRAA-MQSMTNHT  285 (315)
Q Consensus       209 ~~~~~~~l~s~~~d~~i~~wd--~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~-~~~~~~~~  285 (315)
                      .   -.+...|...+.+.+-.  ...-.++..+.+|.+.+.++.|.|..+.|.+|..|..|.+||+--++. .....+|.
T Consensus       164 d---~~~~fvGd~~gqvt~lr~~~~~~~~i~~~~~h~~~~~~l~Wd~~~~~LfSg~~d~~vi~wdigg~~g~~~el~gh~  240 (404)
T KOG1409|consen  164 D---ALYAFVGDHSGQITMLKLEQNGCQLITTFNGHTGEVTCLKWDPGQRLLFSGASDHSVIMWDIGGRKGTAYELQGHN  240 (404)
T ss_pred             e---eEEEEecccccceEEEEEeecCCceEEEEcCcccceEEEEEcCCCcEEEeccccCceEEEeccCCcceeeeeccch
Confidence            0   01333444445544332  334456778889999999999999999999999999999999975443 34567898


Q ss_pred             cceEEEEEeeCCCEEEEEeCCCcEEEeecC
Q 021247          286 DQVWGVSFRPLGGRVVSVSDDKSISLYEYS  315 (315)
Q Consensus       286 ~~v~~~~~s~~~~~l~s~~~d~~i~i~~~~  315 (315)
                      +.|..+..-+--+.+++++.||.|.+|+++
T Consensus       241 ~kV~~l~~~~~t~~l~S~~edg~i~~w~mn  270 (404)
T KOG1409|consen  241 DKVQALSYAQHTRQLISCGEDGGIVVWNMN  270 (404)
T ss_pred             hhhhhhhhhhhheeeeeccCCCeEEEEecc
Confidence            999988888778889999999999999974

>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]

Probab=99.32  E-value=1.6e-10  Score=90.79  Aligned_cols=253  Identities=18%  Similarity=0.293  Sum_probs=166.1

Q ss_pred             cccceEEEEeCCCCCEEEEeeCCCeEEEEECCCCc-e----eEEeeCCc------------ccEEEEEECC-CCCeEEEE
Q 021247           59 HCLGVVSVAAHPSGIIAASASLDSFVRVFDVDTNA-S----IATLEASP------------SEVWQMQFDP-KGTTLAVA  120 (315)
Q Consensus        59 h~~~v~~~~~~~~g~~l~s~~~d~~i~~w~~~~~~-~----~~~~~~~~------------~~v~~~~~~~-~~~~~~~~  120 (315)
                      ...-|+++-|...|.++++|...|.|-++.-+... |    +..++.|.            ..|..+.|.. .+..-++.
T Consensus        25 ead~ItaVefd~tg~YlatGDkgGRVvlfer~~s~~ceykf~teFQshe~EFDYLkSleieEKin~I~w~~~t~r~hFLl  104 (460)
T COG5170          25 EADKITAVEFDETGLYLATGDKGGRVVLFEREKSYGCEYKFFTEFQSHELEFDYLKSLEIEEKINAIEWFDDTGRNHFLL  104 (460)
T ss_pred             ccceeeEEEeccccceEeecCCCceEEEeecccccccchhhhhhhcccccchhhhhhccHHHHhhheeeecCCCcceEEE
Confidence            34568899999999999999999999998755432 1    11233332            2466677653 34333344


Q ss_pred             ecCCCeEEEEecCCccee--e------eecCCCCCCC--------------------CCC--ccCCCCcceEEEEECCCC
Q 021247          121 GGGSASVKLWDTATWNLI--A------TLSIPRPEGL--------------------KPT--DKSSSKKFVLSVAWSPDG  170 (315)
Q Consensus       121 ~~~d~~i~~~d~~~~~~~--~------~~~~~~~~~~--------------------~~~--~~~~~~~~i~~~~~~~~~  170 (315)
                      .+.|.+|++|-+...+..  .      .+..+.....                    .|.  -...|...|.++.++.|.
T Consensus       105 stNdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~p~rvyaNaH~yhiNSiS~NsD~  184 (460)
T COG5170         105 STNDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAKPCRVYANAHPYHINSISFNSDK  184 (460)
T ss_pred             ecCCceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccccccceEEEeccceeccccceeEeeeeeecCch
Confidence            567999999998654221  1      1111111000                    000  113456678899999988


Q ss_pred             CEEEEecCCCcEEEEEcccce---eeeeecCCc-----cceEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCeeE------
Q 021247          171 RRIACGSMDGTISVFDVTRAK---FLHHLEGHF-----MPVRSLVYSPVDPRVLFSASDDTHVHMYDAEGKSLV------  236 (315)
Q Consensus       171 ~~l~~~s~dg~i~i~d~~~~~---~~~~~~~~~-----~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~------  236 (315)
                      +.++++ .|-+|.+|.+.-..   .+..++.|+     ..|++..|+|....++.=++..|.|++-|++...+-      
T Consensus       185 et~lSa-DdLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~cn~fmYSsSkG~Ikl~DlRq~alcdn~~kl  263 (460)
T COG5170         185 ETLLSA-DDLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSSSKGEIKLNDLRQSALCDNSKKL  263 (460)
T ss_pred             heeeec-cceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHcceEEEecCCCcEEehhhhhhhhccCchhh
Confidence            877765 67789999886332   133444554     357888999988888888889999999998743211      


Q ss_pred             --EE--------eecccccEEEEEEcCCCCeEEEEeCCCcEEEEecCcc-ceehccccc------------ccceE---E
Q 021247          237 --TA--------MSGHASWVLSVDASPDGAAITTGSSDRTVKLWDLNMR-AAMQSMTNH------------TDQVW---G  290 (315)
Q Consensus       237 --~~--------~~~~~~~i~~~~~~~~~~~l~s~~~d~~i~iwd~~~~-~~~~~~~~~------------~~~v~---~  290 (315)
                        .+        +.+-...|..+.|+++|+++++-+. -+|++||.+.. .++.+++-|            .+.|.   .
T Consensus       264 fe~~~D~v~~~ff~eivsSISD~kFs~ngryIlsRdy-ltvkiwDvnm~k~pikTi~~h~~l~~~l~d~YEnDaifdkFe  342 (460)
T COG5170         264 FELTIDGVDVDFFEEIVSSISDFKFSDNGRYILSRDY-LTVKIWDVNMAKNPIKTIPMHCDLMDELNDVYENDAIFDKFE  342 (460)
T ss_pred             hhhccCcccchhHHHHhhhhcceEEcCCCcEEEEecc-ceEEEEecccccCCceeechHHHHHHHHHhhhhccceeeeEE
Confidence              01        1122356788999999999886554 47999999864 456665444            23443   5


Q ss_pred             EEEeeCCCEEEEEeCCCcEEEee
Q 021247          291 VSFRPLGGRVVSVSDDKSISLYE  313 (315)
Q Consensus       291 ~~~s~~~~~l~s~~~d~~i~i~~  313 (315)
                      +.||.+.+.+++|+.....-||-
T Consensus       343 isfSgd~~~v~sgsy~NNfgiyp  365 (460)
T COG5170         343 ISFSGDDKHVLSGSYSNNFGIYP  365 (460)
T ss_pred             EEecCCcccccccccccceeeec
Confidence            78999989999999887766653

>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]

Probab=99.32  E-value=1.3e-11  Score=116.03  Aligned_cols=196  Identities=17%  Similarity=0.255  Sum_probs=141.0

Q ss_pred             cccceEEEEEeecCCCCCcEEEEeeCCCcEEEEcCCCCcceeec--cccccceEEEEeCCCCCEEEEeeCCCeEEEEECC
Q 021247           13 HEESVWAVTWVPATETRPALLLTGSLDETVKLWRPDDMQLERTN--TGHCLGVVSVAAHPSGIIAASASLDSFVRVFDVD   90 (315)
Q Consensus        13 h~~~v~~v~~~~~~~~~~~~l~sgs~d~~v~~w~~~~~~~~~~~--~~h~~~v~~~~~~~~g~~l~s~~~d~~i~~w~~~   90 (315)
                      |-+.|-++.-.|...    +-+||+.||.|++|.....+.....  .|. ..|+.+.|+.+|+.+..+..||.+-+|...
T Consensus      2207 ~v~~v~r~~sHp~~~----~Yltgs~dgsv~~~~w~~~~~v~~~rt~g~-s~vtr~~f~~qGnk~~i~d~dg~l~l~q~~ 2281 (2439)
T KOG1064|consen 2207 PVENVRRMTSHPSDP----YYLTGSQDGSVRMFEWGHGQQVVCFRTAGN-SRVTRSRFNHQGNKFGIVDGDGDLSLWQAS 2281 (2439)
T ss_pred             ccCceeeecCCCCCc----eEEecCCCceEEEEeccCCCeEEEeeccCc-chhhhhhhcccCCceeeeccCCceeecccC
Confidence            345666666555443    6899999999999987655433322  234 778999999999999999999999999987


Q ss_pred             CCceeEEeeCCcccEEEEEECCCCCeEEEEe--cCCCeEEEEecCCcceeeeecCCCCCCCCCCccCCCCcceEEEEECC
Q 021247           91 TNASIATLEASPSEVWQMQFDPKGTTLAVAG--GGSASVKLWDTATWNLIATLSIPRPEGLKPTDKSSSKKFVLSVAWSP  168 (315)
Q Consensus        91 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~--~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~  168 (315)
                       .+.....+.|.......+|-.+  .++-+|  .+++.+.+||..-....           .... ..|....+++++.|
T Consensus      2282 -pk~~~s~qchnk~~~Df~Fi~s--~~~tag~s~d~~n~~lwDtl~~~~~-----------s~v~-~~H~~gaT~l~~~P 2346 (2439)
T KOG1064|consen 2282 -PKPYTSWQCHNKALSDFRFIGS--LLATAGRSSDNRNVCLWDTLLPPMN-----------SLVH-TCHDGGATVLAYAP 2346 (2439)
T ss_pred             -CcceeccccCCccccceeeeeh--hhhccccCCCCCcccchhcccCccc-----------ceee-eecCCCceEEEEcC
Confidence             4556666777776667666542  222222  35688999996421100           0001 23455689999999


Q ss_pred             CCCEEEEecCCCcEEEEEcccceeeeeecCCccceEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCeeEEEe
Q 021247          169 DGRRIACGSMDGTISVFDVTRAKFLHHLEGHFMPVRSLVYSPVDPRVLFSASDDTHVHMYDAEGKSLVTAM  239 (315)
Q Consensus       169 ~~~~l~~~s~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~  239 (315)
                      ....|++|+.+|.|++||++..+.++.+..         +.  ...++++++..|.|+||++....+++.+
T Consensus      2347 ~~qllisggr~G~v~l~D~rqrql~h~~~~---------~~--~~~~f~~~ss~g~ikIw~~s~~~ll~~~ 2406 (2439)
T KOG1064|consen 2347 KHQLLISGGRKGEVCLFDIRQRQLRHTFQA---------LD--TREYFVTGSSEGNIKIWRLSEFGLLHTF 2406 (2439)
T ss_pred             cceEEEecCCcCcEEEeehHHHHHHHHhhh---------hh--hhheeeccCcccceEEEEccccchhhcC
Confidence            999999999999999999988776655543         22  4568999999999999999876555443

>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]

Probab=99.32  E-value=1e-09  Score=92.58  Aligned_cols=251  Identities=18%  Similarity=0.355  Sum_probs=157.2

Q ss_pred             EEEEEeecCCCCCcEEEEeeCCCcEEEEcCCCCcceeeccccccceEEEEeCCCC--CEEE-----EeeCCCeEEEEECC
Q 021247           18 WAVTWVPATETRPALLLTGSLDETVKLWRPDDMQLERTNTGHCLGVVSVAAHPSG--IIAA-----SASLDSFVRVFDVD   90 (315)
Q Consensus        18 ~~v~~~~~~~~~~~~l~sgs~d~~v~~w~~~~~~~~~~~~~h~~~v~~~~~~~~g--~~l~-----s~~~d~~i~~w~~~   90 (315)
                      |+.+|+++..     ++.=-..+.|.+|+....+... .+-|...+..+.++|.+  ..++     ..|.-+.+|+|...
T Consensus       129 W~~qfs~dEs-----l~arlv~nev~f~~~~~f~~~~-~kl~~~~i~~f~lSpgp~~~~vAvyvPe~kGaPa~vri~~~~  202 (566)
T KOG2315|consen  129 WVPQFSIDES-----LAARLVSNEVQFYDLGSFKTIQ-HKLSVSGITMLSLSPGPEPPFVAVYVPEKKGAPASVRIYKYP  202 (566)
T ss_pred             cccccccchh-----hhhhhhcceEEEEecCCcccee-eeeeccceeeEEecCCCCCceEEEEccCCCCCCcEEEEeccc
Confidence            6788877653     3333345789999876633211 12255677778887763  3333     24666789999886


Q ss_pred             CCce---eEEeeCCcccEEEEEECCCCCeEEEEec-----------CCCeEEEEecCCcceeeeecCCCCCCCCCCccCC
Q 021247           91 TNAS---IATLEASPSEVWQMQFDPKGTTLAVAGG-----------GSASVKLWDTATWNLIATLSIPRPEGLKPTDKSS  156 (315)
Q Consensus        91 ~~~~---~~~~~~~~~~v~~~~~~~~~~~~~~~~~-----------~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~  156 (315)
                      ....   +..-......-..+.|++.|+-+++..+           +..++.++++......  +.++            
T Consensus       203 ~~~~~~~~a~ksFFkadkvqm~WN~~gt~LLvLastdVDktn~SYYGEq~Lyll~t~g~s~~--V~L~------------  268 (566)
T KOG2315|consen  203 EEGQHQPVANKSFFKADKVQMKWNKLGTALLVLASTDVDKTNASYYGEQTLYLLATQGESVS--VPLL------------  268 (566)
T ss_pred             cccccchhhhccccccceeEEEeccCCceEEEEEEEeecCCCccccccceEEEEEecCceEE--EecC------------
Confidence            3221   1111111222346778888776554332           2246777776522222  2211            


Q ss_pred             CCcceEEEEECCCCCEEEE--ecCCCcEEEEEcccceeeeeecCCccceEEEEEcCCCCcEEEEEeC---CCeEEEEeCC
Q 021247          157 SKKFVLSVAWSPDGRRIAC--GSMDGTISVFDVTRAKFLHHLEGHFMPVRSLVYSPVDPRVLFSASD---DTHVHMYDAE  231 (315)
Q Consensus       157 ~~~~i~~~~~~~~~~~l~~--~s~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~---d~~i~~wd~~  231 (315)
                      ...+|.++.|+|+++.|++  |.+-..+-+||++ +..+..+.  +++=+++-|+| .+++++.+|-   -|.+-+||..
T Consensus       269 k~GPVhdv~W~~s~~EF~VvyGfMPAkvtifnlr-~~~v~df~--egpRN~~~fnp-~g~ii~lAGFGNL~G~mEvwDv~  344 (566)
T KOG2315|consen  269 KEGPVHDVTWSPSGREFAVVYGFMPAKVTIFNLR-GKPVFDFP--EGPRNTAFFNP-HGNIILLAGFGNLPGDMEVWDVP  344 (566)
T ss_pred             CCCCceEEEECCCCCEEEEEEecccceEEEEcCC-CCEeEeCC--CCCccceEECC-CCCEEEEeecCCCCCceEEEecc
Confidence            2345999999999988765  5678899999985 44444443  45667888999 4556555543   4789999999


Q ss_pred             CCeeEEEeecccccEEEEEEcCCCCeEEEEeC------CCcEEEEecCccceehcccccccceEEEEEeeC
Q 021247          232 GKSLVTAMSGHASWVLSVDASPDGAAITTGSS------DRTVKLWDLNMRAAMQSMTNHTDQVWGVSFRPL  296 (315)
Q Consensus       232 ~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~------d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~  296 (315)
                      +.+++.....-  ..+-++|+|+|++++|+..      |+.++||+.. |+.++...-.+ ..+.+.|-|.
T Consensus       345 n~K~i~~~~a~--~tt~~eW~PdGe~flTATTaPRlrvdNg~Kiwhyt-G~~l~~~~f~s-EL~qv~W~P~  411 (566)
T KOG2315|consen  345 NRKLIAKFKAA--NTTVFEWSPDGEYFLTATTAPRLRVDNGIKIWHYT-GSLLHEKMFKS-ELLQVEWRPF  411 (566)
T ss_pred             chhhccccccC--CceEEEEcCCCcEEEEEeccccEEecCCeEEEEec-CceeehhhhhH-hHhheeeeec
Confidence            88777666532  3455799999999999877      6789999986 44443321111 5777777764

>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain

Probab=99.32  E-value=1.5e-08  Score=84.15  Aligned_cols=229  Identities=14%  Similarity=0.085  Sum_probs=138.8

Q ss_pred             CCCcEEEEcCCCCcceeecccc-------ccceEEEEeCCCCCEEEEee--CCCeEEEEECCCCceeEEeeCCcccEEEE
Q 021247           38 LDETVKLWRPDDMQLERTNTGH-------CLGVVSVAAHPSGIIAASAS--LDSFVRVFDVDTNASIATLEASPSEVWQM  108 (315)
Q Consensus        38 ~d~~v~~w~~~~~~~~~~~~~h-------~~~v~~~~~~~~g~~l~s~~--~d~~i~~w~~~~~~~~~~~~~~~~~v~~~  108 (315)
                      .+..|.+||..+.+....++--       ......+.++|+|++++...  .+..+-+.|+.+++.+..+.... .....
T Consensus        75 ~~d~V~v~D~~t~~~~~~i~~p~~p~~~~~~~~~~~~ls~dgk~l~V~n~~p~~~V~VvD~~~~kvv~ei~vp~-~~~vy  153 (352)
T TIGR02658        75 RTDYVEVIDPQTHLPIADIELPEGPRFLVGTYPWMTSLTPDNKTLLFYQFSPSPAVGVVDLEGKAFVRMMDVPD-CYHIF  153 (352)
T ss_pred             CCCEEEEEECccCcEEeEEccCCCchhhccCccceEEECCCCCEEEEecCCCCCEEEEEECCCCcEEEEEeCCC-CcEEE
Confidence            5889999999999887765421       12234788999999877554  37899999999999888776532 22222


Q ss_pred             EECCCCCeEEEEecCCCeEEEEecCC-cce-eeeecCCCCCCCCCCccCCCCcceEEEEECC-CCCEEEEecCCCcEEEE
Q 021247          109 QFDPKGTTLAVAGGGSASVKLWDTAT-WNL-IATLSIPRPEGLKPTDKSSSKKFVLSVAWSP-DGRRIACGSMDGTISVF  185 (315)
Q Consensus       109 ~~~~~~~~~~~~~~~d~~i~~~d~~~-~~~-~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~s~dg~i~i~  185 (315)
                      ..++... ++.  ..|+......+.. ++. ..+..+-... ..+    ....+    .|.+ +|+++....+ |.|.+.
T Consensus       154 ~t~e~~~-~~~--~~Dg~~~~v~~d~~g~~~~~~~~vf~~~-~~~----v~~rP----~~~~~dg~~~~vs~e-G~V~~i  220 (352)
T TIGR02658       154 PTANDTF-FMH--CRDGSLAKVGYGTKGNPKIKPTEVFHPE-DEY----LINHP----AYSNKSGRLVWPTYT-GKIFQI  220 (352)
T ss_pred             EecCCcc-EEE--eecCceEEEEecCCCceEEeeeeeecCC-ccc----cccCC----ceEcCCCcEEEEecC-CeEEEE
Confidence            2322222 211  1233333322221 111 1111000000 000    00111    3344 7888877766 999999


Q ss_pred             Ecccc-----eeeeeecC-------CccceEEEEEcCCCCcEEEEEe---------CCCeEEEEeCCCCeeEEEeecccc
Q 021247          186 DVTRA-----KFLHHLEG-------HFMPVRSLVYSPVDPRVLFSAS---------DDTHVHMYDAEGKSLVTAMSGHAS  244 (315)
Q Consensus       186 d~~~~-----~~~~~~~~-------~~~~v~~~~~~~~~~~~l~s~~---------~d~~i~~wd~~~~~~~~~~~~~~~  244 (315)
                      |+...     ..+..+..       ......-++++|++.++++...         ..+.|.++|.++++.+..+.- ..
T Consensus       221 d~~~~~~~~~~~~~~~~~~~~~~~wrP~g~q~ia~~~dg~~lyV~~~~~~~~thk~~~~~V~ViD~~t~kvi~~i~v-G~  299 (352)
T TIGR02658       221 DLSSGDAKFLPAIEAFTEAEKADGWRPGGWQQVAYHRARDRIYLLADQRAKWTHKTASRFLFVVDAKTGKRLRKIEL-GH  299 (352)
T ss_pred             ecCCCcceecceeeeccccccccccCCCcceeEEEcCCCCEEEEEecCCccccccCCCCEEEEEECCCCeEEEEEeC-CC
Confidence            96432     22222211       1122334899986666555331         125899999999998887763 34


Q ss_pred             cEEEEEEcCCCC-eEEEEe-CCCcEEEEecCccceehcc
Q 021247          245 WVLSVDASPDGA-AITTGS-SDRTVKLWDLNMRAAMQSM  281 (315)
Q Consensus       245 ~i~~~~~~~~~~-~l~s~~-~d~~i~iwd~~~~~~~~~~  281 (315)
                      .+..++++|+++ +|++.. .++.|.++|..+++.++++
T Consensus       300 ~~~~iavS~Dgkp~lyvtn~~s~~VsViD~~t~k~i~~i  338 (352)
T TIGR02658       300 EIDSINVSQDAKPLLYALSTGDKTLYIFDAETGKELSSV  338 (352)
T ss_pred             ceeeEEECCCCCeEEEEeCCCCCcEEEEECcCCeEEeee
Confidence            688999999999 776555 6788999999999888776

This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.

>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]

Probab=99.30  E-value=6.9e-09  Score=87.62  Aligned_cols=273  Identities=16%  Similarity=0.252  Sum_probs=168.6

Q ss_pred             EEEEEeecCCCCCcEEEEeeCCCcEEEEcCCCCcceeeccccccceEEEEeCCCCCEEEEeeC-----------CCeEEE
Q 021247           18 WAVTWVPATETRPALLLTGSLDETVKLWRPDDMQLERTNTGHCLGVVSVAAHPSGIIAASASL-----------DSFVRV   86 (315)
Q Consensus        18 ~~v~~~~~~~~~~~~l~sgs~d~~v~~w~~~~~~~~~~~~~h~~~v~~~~~~~~g~~l~s~~~-----------d~~i~~   86 (315)
                      +=|.|+|-+.    +|+|=-.- -|.+|--......+.+. | -.|.-+.|||..++|++=+.           -..+.|
T Consensus       214 tyv~wSP~GT----YL~t~Hk~-GI~lWGG~~f~r~~RF~-H-p~Vq~idfSP~EkYLVT~s~~p~~~~~~d~e~~~l~I  286 (698)
T KOG2314|consen  214 TYVRWSPKGT----YLVTFHKQ-GIALWGGESFDRIQRFY-H-PGVQFIDFSPNEKYLVTYSPEPIIVEEDDNEGQQLII  286 (698)
T ss_pred             eeEEecCCce----EEEEEecc-ceeeecCccHHHHHhcc-C-CCceeeecCCccceEEEecCCccccCcccCCCceEEE
Confidence            4578999775    67775554 46789766555444443 3 36889999999999998543           256999


Q ss_pred             EECCCCceeEEeeC--CcccEE-EEEECCCCCeEEEEecCCCeEEEEecCCcceeeeecCCCCCCCCCCccCCCCcceEE
Q 021247           87 FDVDTNASIATLEA--SPSEVW-QMQFDPKGTTLAVAGGGSASVKLWDTATWNLIATLSIPRPEGLKPTDKSSSKKFVLS  163 (315)
Q Consensus        87 w~~~~~~~~~~~~~--~~~~v~-~~~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~  163 (315)
                      ||+.+|.....+..  .+..+| -..|+.++++++--  .-..|.||+.....++..-.+             .-..|..
T Consensus       287 WDI~tG~lkrsF~~~~~~~~~WP~frWS~DdKy~Arm--~~~sisIyEtpsf~lld~Ksl-------------ki~gIr~  351 (698)
T KOG2314|consen  287 WDIATGLLKRSFPVIKSPYLKWPIFRWSHDDKYFARM--TGNSISIYETPSFMLLDKKSL-------------KISGIRD  351 (698)
T ss_pred             EEccccchhcceeccCCCccccceEEeccCCceeEEe--ccceEEEEecCceeeeccccc-------------CCccccC
Confidence            99999987776655  333344 56799998876533  337899998876443322111             1123778


Q ss_pred             EEECCCCCEEEEecC-----CCcEEEEEcccceeeeeecCCccceEEEEEcCCCCcEEEEE----------eCCCeEEEE
Q 021247          164 VAWSPDGRRIACGSM-----DGTISVFDVTRAKFLHHLEGHFMPVRSLVYSPVDPRVLFSA----------SDDTHVHMY  228 (315)
Q Consensus       164 ~~~~~~~~~l~~~s~-----dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~----------~~d~~i~~w  228 (315)
                      ..|+|.++.||-=+.     -.++-+..+.+.+.+.....++-.=..+-|-. .+.+|..-          +.-..+-|+
T Consensus       352 FswsP~~~llAYwtpe~~~~parvtL~evPs~~~iRt~nlfnVsDckLhWQk-~gdyLcvkvdR~tK~~~~g~f~n~eIf  430 (698)
T KOG2314|consen  352 FSWSPTSNLLAYWTPETNNIPARVTLMEVPSKREIRTKNLFNVSDCKLHWQK-SGDYLCVKVDRHTKSKVKGQFSNLEIF  430 (698)
T ss_pred             cccCCCcceEEEEcccccCCcceEEEEecCccceeeeccceeeeccEEEecc-CCcEEEEEEEeeccccccceEeeEEEE
Confidence            899998887775332     12466666666665554443322222344444 23333221          111234556


Q ss_pred             eCCCCeeEEEeecccccEEEEEEcCCCCeEEEEeCC---CcEEEEecCc-c---ceehcccccccceEEEEEeeCCCEEE
Q 021247          229 DAEGKSLVTAMSGHASWVLSVDASPDGAAITTGSSD---RTVKLWDLNM-R---AAMQSMTNHTDQVWGVSFRPLGGRVV  301 (315)
Q Consensus       229 d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~d---~~i~iwd~~~-~---~~~~~~~~~~~~v~~~~~s~~~~~l~  301 (315)
                      .++...+......-...|...+|-|.|..+++-+.+   .++++|.+++ .   +.+..+.  ....+.+-|+|.|+.++
T Consensus       431 rireKdIpve~velke~vi~FaWEP~gdkF~vi~g~~~k~tvsfY~~e~~~~~~~lVk~~d--k~~~N~vfwsPkG~fvv  508 (698)
T KOG2314|consen  431 RIREKDIPVEVVELKESVIAFAWEPHGDKFAVISGNTVKNTVSFYAVETNIKKPSLVKELD--KKFANTVFWSPKGRFVV  508 (698)
T ss_pred             EeeccCCCceeeecchheeeeeeccCCCeEEEEEccccccceeEEEeecCCCchhhhhhhc--ccccceEEEcCCCcEEE
Confidence            655544333333345678899999999876655443   4688887763 1   2233333  35677899999999987


Q ss_pred             EE---eCCCcEEEeecC
Q 021247          302 SV---SDDKSISLYEYS  315 (315)
Q Consensus       302 s~---~~d~~i~i~~~~  315 (315)
                      .+   |.-|.+..+|.+
T Consensus       509 va~l~s~~g~l~F~D~~  525 (698)
T KOG2314|consen  509 VAALVSRRGDLEFYDTD  525 (698)
T ss_pred             EEEecccccceEEEecc
Confidence            54   446788888753

>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]

Probab=99.30  E-value=3.8e-08  Score=81.88  Aligned_cols=180  Identities=16%  Similarity=0.182  Sum_probs=123.4

Q ss_pred             eCCCcEEEEcCCCCcceeeccc------cccc--e---EEE-EeC-CCCCEEEEeeCCCeEEEEECCCCceeEEeeCCcc
Q 021247           37 SLDETVKLWRPDDMQLERTNTG------HCLG--V---VSV-AAH-PSGIIAASASLDSFVRVFDVDTNASIATLEASPS  103 (315)
Q Consensus        37 s~d~~v~~w~~~~~~~~~~~~~------h~~~--v---~~~-~~~-~~g~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~  103 (315)
                      +..|.|.+||+++..+.+.-.+      ...+  +   .-+ .|+ .+|.+++..| .|...+.+...+..++.  .+..
T Consensus       284 q~~GdIylydP~td~lekldI~lpl~rk~k~~k~~~pskyledfa~~~Gd~ia~VS-RGkaFi~~~~~~~~iqv--~~~~  360 (668)
T COG4946         284 QNAGDIYLYDPETDSLEKLDIGLPLDRKKKQPKFVNPSKYLEDFAVVNGDYIALVS-RGKAFIMRPWDGYSIQV--GKKG  360 (668)
T ss_pred             ecCCcEEEeCCCcCcceeeecCCccccccccccccCHHHhhhhhccCCCcEEEEEe-cCcEEEECCCCCeeEEc--CCCC
Confidence            5568899999988776553221      0001  1   011 122 2678888877 46677777766655543  2344


Q ss_pred             cEEEEEECCCCCeEEEEecCCC-eEEEEecCCcceeeeecCCCCCCCCCCccCCCCcceEEEEECCCCCEEEEecCCCcE
Q 021247          104 EVWQMQFDPKGTTLAVAGGGSA-SVKLWDTATWNLIATLSIPRPEGLKPTDKSSSKKFVLSVAWSPDGRRIACGSMDGTI  182 (315)
Q Consensus       104 ~v~~~~~~~~~~~~~~~~~~d~-~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~s~dg~i  182 (315)
                      .|....+..+++.+ +.|..|| .+.+||.++++.....              ..-..|..+..+++|+.++++.....+
T Consensus       361 ~VrY~r~~~~~e~~-vigt~dgD~l~iyd~~~~e~kr~e--------------~~lg~I~av~vs~dGK~~vvaNdr~el  425 (668)
T COG4946         361 GVRYRRIQVDPEGD-VIGTNDGDKLGIYDKDGGEVKRIE--------------KDLGNIEAVKVSPDGKKVVVANDRFEL  425 (668)
T ss_pred             ceEEEEEccCCcce-EEeccCCceEEEEecCCceEEEee--------------CCccceEEEEEcCCCcEEEEEcCceEE
Confidence            57766776666644 4567777 8999999886543221              112348899999999999999888999


Q ss_pred             EEEEcccceeeeeecCCccceEEEEEcCCCCcEEEEEeCCC----eEEEEeCCCCee
Q 021247          183 SVFDVTRAKFLHHLEGHFMPVRSLVYSPVDPRVLFSASDDT----HVHMYDAEGKSL  235 (315)
Q Consensus       183 ~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~----~i~~wd~~~~~~  235 (315)
                      .+.|+.++.....-+....-|+.+.|+| ++++++=+--+|    .|++||+.+++.
T Consensus       426 ~vididngnv~~idkS~~~lItdf~~~~-nsr~iAYafP~gy~tq~Iklydm~~~Ki  481 (668)
T COG4946         426 WVIDIDNGNVRLIDKSEYGLITDFDWHP-NSRWIAYAFPEGYYTQSIKLYDMDGGKI  481 (668)
T ss_pred             EEEEecCCCeeEecccccceeEEEEEcC-CceeEEEecCcceeeeeEEEEecCCCeE
Confidence            9999999887665556667899999998 778887665554    689999876543

>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL

Probab=99.27  E-value=1.8e-08  Score=86.57  Aligned_cols=263  Identities=14%  Similarity=0.057  Sum_probs=156.1

Q ss_pred             cEEEEeeCCCcEEEEcCCCCcceeeccccccceEEEEeCCCCCEEEEeeCCCeEEEEECCCCceeEEeeCCcccEEEEEE
Q 021247           31 ALLLTGSLDETVKLWRPDDMQLERTNTGHCLGVVSVAAHPSGIIAASASLDSFVRVFDVDTNASIATLEASPSEVWQMQF  110 (315)
Q Consensus        31 ~~l~sgs~d~~v~~w~~~~~~~~~~~~~h~~~v~~~~~~~~g~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~v~~~~~  110 (315)
                      ..++.++.+|.|.-+|..+++......-.........  .++..++.++.++.+..+|..+++.+...............
T Consensus        66 ~~v~v~~~~g~v~a~d~~tG~~~W~~~~~~~~~~~p~--v~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~~~p~v  143 (377)
T TIGR03300        66 GKVYAADADGTVVALDAETGKRLWRVDLDERLSGGVG--ADGGLVFVGTEKGEVIALDAEDGKELWRAKLSSEVLSPPLV  143 (377)
T ss_pred             CEEEEECCCCeEEEEEccCCcEeeeecCCCCcccceE--EcCCEEEEEcCCCEEEEEECCCCcEeeeeccCceeecCCEE
Confidence            3688889999999999888877654322211111111  24567777888999999999999887665433221111111


Q ss_pred             CCCCCeEEEEecCCCeEEEEecCCcceeeeecCCCCCCCCCCccCCCCcceEEEEECCCCCEEEEecCCCcEEEEEcccc
Q 021247          111 DPKGTTLAVAGGGSASVKLWDTATWNLIATLSIPRPEGLKPTDKSSSKKFVLSVAWSPDGRRIACGSMDGTISVFDVTRA  190 (315)
Q Consensus       111 ~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~s~dg~i~i~d~~~~  190 (315)
                        .+..+ +.+..++.+..+|.++++.+.......+..    ......    +...  .+..++.+..++.+..+|++++
T Consensus       144 --~~~~v-~v~~~~g~l~a~d~~tG~~~W~~~~~~~~~----~~~~~~----sp~~--~~~~v~~~~~~g~v~ald~~tG  210 (377)
T TIGR03300       144 --ANGLV-VVRTNDGRLTALDAATGERLWTYSRVTPAL----TLRGSA----SPVI--ADGGVLVGFAGGKLVALDLQTG  210 (377)
T ss_pred             --ECCEE-EEECCCCeEEEEEcCCCceeeEEccCCCce----eecCCC----CCEE--ECCEEEEECCCCEEEEEEccCC
Confidence              13334 445678999999999998887765432110    000000    1111  1246778888899999999888


Q ss_pred             eeeeeecCCcc----c---eEEEEEcC-CCCcEEEEEeCCCeEEEEeCCCCeeEEEeecccccEEEEEEcCCCCeEEEEe
Q 021247          191 KFLHHLEGHFM----P---VRSLVYSP-VDPRVLFSASDDTHVHMYDAEGKSLVTAMSGHASWVLSVDASPDGAAITTGS  262 (315)
Q Consensus       191 ~~~~~~~~~~~----~---v~~~~~~~-~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~  262 (315)
                      +.+-.......    .   ...+.-+| ..+..++.++.++.+..||.++++.+-.... .. .....  ..+..++.++
T Consensus       211 ~~~W~~~~~~~~g~~~~~~~~~~~~~p~~~~~~vy~~~~~g~l~a~d~~tG~~~W~~~~-~~-~~~p~--~~~~~vyv~~  286 (377)
T TIGR03300       211 QPLWEQRVALPKGRTELERLVDVDGDPVVDGGQVYAVSYQGRVAALDLRSGRVLWKRDA-SS-YQGPA--VDDNRLYVTD  286 (377)
T ss_pred             CEeeeeccccCCCCCchhhhhccCCccEEECCEEEEEEcCCEEEEEECCCCcEEEeecc-CC-ccCce--EeCCEEEEEC
Confidence            76533221000    0   00000011 0234677788899999999988866543331 11 11122  2355777888


Q ss_pred             CCCcEEEEecCccceehccccc-ccceEEEEEeeCCCEEEEEeCCCcEEEeec
Q 021247          263 SDRTVKLWDLNMRAAMQSMTNH-TDQVWGVSFRPLGGRVVSVSDDKSISLYEY  314 (315)
Q Consensus       263 ~d~~i~iwd~~~~~~~~~~~~~-~~~v~~~~~s~~~~~l~s~~~d~~i~i~~~  314 (315)
                      .||.+..+|..+++.+-..... .....+...  .+.+|+.++.+|.|.++|.
T Consensus       287 ~~G~l~~~d~~tG~~~W~~~~~~~~~~ssp~i--~g~~l~~~~~~G~l~~~d~  337 (377)
T TIGR03300       287 ADGVVVALDRRSGSELWKNDELKYRQLTAPAV--VGGYLVVGDFEGYLHWLSR  337 (377)
T ss_pred             CCCeEEEEECCCCcEEEccccccCCccccCEE--ECCEEEEEeCCCEEEEEEC
Confidence            9999999999888754332111 111122122  4678999999999999874

Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.

>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]

Probab=99.26  E-value=2.2e-07  Score=74.91  Aligned_cols=267  Identities=16%  Similarity=0.216  Sum_probs=167.7

Q ss_pred             ccccceEEEEEeecCCCCCcEEEEeeCC---CcEEEEcCCC--Ccceee--ccccccceEEEEeCCCCCEEEEeeC-CCe
Q 021247           12 AHEESVWAVTWVPATETRPALLLTGSLD---ETVKLWRPDD--MQLERT--NTGHCLGVVSVAAHPSGIIAASASL-DSF   83 (315)
Q Consensus        12 ~h~~~v~~v~~~~~~~~~~~~l~sgs~d---~~v~~w~~~~--~~~~~~--~~~h~~~v~~~~~~~~g~~l~s~~~-d~~   83 (315)
                      .+...++=++|.|..+    .|+++..+   |.|..|..+.  +.+...  ......+.+.++++++|++++++.. -|.
T Consensus        37 ~~~~nptyl~~~~~~~----~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~~~~~g~~p~yvsvd~~g~~vf~AnY~~g~  112 (346)
T COG2706          37 AELGNPTYLAVNPDQR----HLYVVNEPGEEGGVAAYRIDPDDGRLTFLNRQTLPGSPPCYVSVDEDGRFVFVANYHSGS  112 (346)
T ss_pred             cccCCCceEEECCCCC----EEEEEEecCCcCcEEEEEEcCCCCeEEEeeccccCCCCCeEEEECCCCCEEEEEEccCce
Confidence            5566777788888664    57777654   6676666553  444322  2222335589999999998887754 478


Q ss_pred             EEEEECCCCcee----EEeeCCcc----------cEEEEEECCCCCeEEEEecCCCeEEEEecCCcceeeeecCCCCCCC
Q 021247           84 VRVFDVDTNASI----ATLEASPS----------EVWQMQFDPKGTTLAVAGGGSASVKLWDTATWNLIATLSIPRPEGL  149 (315)
Q Consensus        84 i~~w~~~~~~~~----~~~~~~~~----------~v~~~~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~  149 (315)
                      |.++-++....+    ..+. |.+          .+-...+.|+++++++..-+.-.|.+|++..+++.......-    
T Consensus       113 v~v~p~~~dG~l~~~v~~~~-h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~DLG~Dri~~y~~~dg~L~~~~~~~v----  187 (346)
T COG2706         113 VSVYPLQADGSLQPVVQVVK-HTGSGPHERQESPHVHSANFTPDGRYLVVPDLGTDRIFLYDLDDGKLTPADPAEV----  187 (346)
T ss_pred             EEEEEcccCCccccceeeee-cCCCCCCccccCCccceeeeCCCCCEEEEeecCCceEEEEEcccCcccccccccc----
Confidence            999998663222    2222 222          267788999999988877777789999998665432221111    


Q ss_pred             CCCccCCCCcceEEEEECCCCCEEEEe-cCCCcEEEEEcccc--ee--eeeec------CCccceEEEEEcCCCCcEEEE
Q 021247          150 KPTDKSSSKKFVLSVAWSPDGRRIACG-SMDGTISVFDVTRA--KF--LHHLE------GHFMPVRSLVYSPVDPRVLFS  218 (315)
Q Consensus       150 ~~~~~~~~~~~i~~~~~~~~~~~l~~~-s~dg~i~i~d~~~~--~~--~~~~~------~~~~~v~~~~~~~~~~~~l~s  218 (315)
                            ......+.|.|+|++++..+. -.+++|.+|.....  +.  ++.+.      .......+|..+| ++++|.+
T Consensus       188 ------~~G~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ~i~tlP~dF~g~~~~aaIhis~-dGrFLYa  260 (346)
T COG2706         188 ------KPGAGPRHIVFHPNGKYAYLVNELNSTVDVLEYNPAVGKFEELQTIDTLPEDFTGTNWAAAIHISP-DGRFLYA  260 (346)
T ss_pred             ------CCCCCcceEEEcCCCcEEEEEeccCCEEEEEEEcCCCceEEEeeeeccCccccCCCCceeEEEECC-CCCEEEE
Confidence                  111225689999999988654 46889999988653  22  22211      1233456788888 6677766


Q ss_pred             EeC-CCeEEEEeCC--CCe--eEEEeecccccEEEEEEcCCCCeEEEEeCCC-cEEEEecC--ccceehccc-ccccceE
Q 021247          219 ASD-DTHVHMYDAE--GKS--LVTAMSGHASWVLSVDASPDGAAITTGSSDR-TVKLWDLN--MRAAMQSMT-NHTDQVW  289 (315)
Q Consensus       219 ~~~-d~~i~~wd~~--~~~--~~~~~~~~~~~i~~~~~~~~~~~l~s~~~d~-~i~iwd~~--~~~~~~~~~-~~~~~v~  289 (315)
                      +.. ...|.+|.+.  ++.  .+.....+......+.++|.+++|+++..++ .|.+|..+  +++...... .......
T Consensus       261 sNRg~dsI~~f~V~~~~g~L~~~~~~~teg~~PR~F~i~~~g~~Liaa~q~sd~i~vf~~d~~TG~L~~~~~~~~~p~Pv  340 (346)
T COG2706         261 SNRGHDSIAVFSVDPDGGKLELVGITPTEGQFPRDFNINPSGRFLIAANQKSDNITVFERDKETGRLTLLGRYAVVPEPV  340 (346)
T ss_pred             ecCCCCeEEEEEEcCCCCEEEEEEEeccCCcCCccceeCCCCCEEEEEccCCCcEEEEEEcCCCceEEecccccCCCCcE
Confidence            643 3468888754  332  2233334555678899999999998887765 48888765  344332222 2233445


Q ss_pred             EEEEe
Q 021247          290 GVSFR  294 (315)
Q Consensus       290 ~~~~s  294 (315)
                      +|.|.
T Consensus       341 cv~f~  345 (346)
T COG2706         341 CVKFL  345 (346)
T ss_pred             EEEEc
Confidence            66664

>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]

Probab=99.23  E-value=2.2e-08  Score=83.81  Aligned_cols=277  Identities=16%  Similarity=0.183  Sum_probs=175.4

Q ss_pred             cceEEEEEeecCCCCCcEEEEeeCCCc---------------EEEEcCCCCcceeeccccccc--eE-EEEeCCCCCEEE
Q 021247           15 ESVWAVTWVPATETRPALLLTGSLDET---------------VKLWRPDDMQLERTNTGHCLG--VV-SVAAHPSGIIAA   76 (315)
Q Consensus        15 ~~v~~v~~~~~~~~~~~~l~sgs~d~~---------------v~~w~~~~~~~~~~~~~h~~~--v~-~~~~~~~g~~l~   76 (315)
                      ..|.-+.|+|.++    +|.+.+..+.               +.+||...+.+...+.+...+  .. -+.|+.+..+++
T Consensus        72 ~~V~~~~fSP~~k----YL~tw~~~pi~~pe~e~sp~~~~n~~~vwd~~sg~iv~sf~~~~q~~~~Wp~~k~s~~D~y~A  147 (561)
T COG5354          72 PDVKYLDFSPNEK----YLVTWSREPIIEPEIEISPFTSKNNVFVWDIASGMIVFSFNGISQPYLGWPVLKFSIDDKYVA  147 (561)
T ss_pred             CCceecccCcccc----eeeeeccCCccChhhccCCccccCceeEEeccCceeEeeccccCCcccccceeeeeecchhhh
Confidence            5677888888765    7888877554               889998888777766554443  33 667887777766


Q ss_pred             EeeCCCeEEEEECCCCceeEEe-eCCcccEEEEEECCCCCe--EEE----EecCCCeEEEEecCCcceeeeecCCCCCCC
Q 021247           77 SASLDSFVRVFDVDTNASIATL-EASPSEVWQMQFDPKGTT--LAV----AGGGSASVKLWDTATWNLIATLSIPRPEGL  149 (315)
Q Consensus        77 s~~~d~~i~~w~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~--~~~----~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~  149 (315)
                      =.. ...+++.++..+.....+ ......+....|+|.++.  +++    ..+..+++++|.+.....+.+-++-+-   
T Consensus       148 Rvv-~~sl~i~e~t~n~~~~p~~~lr~~gi~dFsisP~~n~~~la~~tPEk~~kpa~~~i~sIp~~s~l~tk~lfk~---  223 (561)
T COG5354         148 RVV-GSSLYIHEITDNIEEHPFKNLRPVGILDFSISPEGNHDELAYWTPEKLNKPAMVRILSIPKNSVLVTKNLFKV---  223 (561)
T ss_pred             hhc-cCeEEEEecCCccccCchhhccccceeeEEecCCCCCceEEEEccccCCCCcEEEEEEccCCCeeeeeeeEee---
Confidence            442 235888887322211111 111345677778886432  222    135567888888765544433322111   


Q ss_pred             CCCccCCCCcceEEEEECCCCCEEEEec-----------CCCcEEEEEcccceeeeeecCCccceEEEEEcCCCCcE-EE
Q 021247          150 KPTDKSSSKKFVLSVAWSPDGRRIACGS-----------MDGTISVFDVTRAKFLHHLEGHFMPVRSLVYSPVDPRV-LF  217 (315)
Q Consensus       150 ~~~~~~~~~~~i~~~~~~~~~~~l~~~s-----------~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~-l~  217 (315)
                                .-..+.|++.|++|++--           .+..+++++++........ .-.++|..+.|.|...++ ++
T Consensus       224 ----------~~~qLkW~~~g~~ll~l~~t~~ksnKsyfgesnLyl~~~~e~~i~V~~-~~~~pVhdf~W~p~S~~F~vi  292 (561)
T COG5354         224 ----------SGVQLKWQVLGKYLLVLVMTHTKSNKSYFGESNLYLLRITERSIPVEK-DLKDPVHDFTWEPLSSRFAVI  292 (561)
T ss_pred             ----------cccEEEEecCCceEEEEEEEeeecccceeccceEEEEeecccccceec-cccccceeeeecccCCceeEE
Confidence                      113678888888765421           1245788888643332222 457899999999965544 34


Q ss_pred             EEeCCCeEEEEeCCCCeeEEEeecccccEEEEEEcCCCCeEEEEeCC---CcEEEEecCccceeh-cccccccceEEEEE
Q 021247          218 SASDDTHVHMYDAEGKSLVTAMSGHASWVLSVDASPDGAAITTGSSD---RTVKLWDLNMRAAMQ-SMTNHTDQVWGVSF  293 (315)
Q Consensus       218 s~~~d~~i~~wd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~d---~~i~iwd~~~~~~~~-~~~~~~~~v~~~~~  293 (315)
                      +|-.+..+.++|+++. +.....  ...=+.+.|+|.+++++.++-|   |.|.+||...+.... .+.+  ....-+.|
T Consensus       293 ~g~~pa~~s~~~lr~N-l~~~~P--e~~rNT~~fsp~~r~il~agF~nl~gni~i~~~~~rf~~~~~~~~--~n~s~~~w  367 (561)
T COG5354         293 SGYMPASVSVFDLRGN-LRFYFP--EQKRNTIFFSPHERYILFAGFDNLQGNIEIFDPAGRFKVAGAFNG--LNTSYCDW  367 (561)
T ss_pred             ecccccceeecccccc-eEEecC--CcccccccccCcccEEEEecCCccccceEEeccCCceEEEEEeec--CCceEeec
Confidence            5567889999999876 333322  2223456799999999987776   579999987654443 3333  34455789


Q ss_pred             eeCCCEEEEEe------CCCcEEEeecC
Q 021247          294 RPLGGRVVSVS------DDKSISLYEYS  315 (315)
Q Consensus       294 s~~~~~l~s~~------~d~~i~i~~~~  315 (315)
                      +|++.++.+.-      .|..|+||++.
T Consensus       368 spd~qF~~~~~ts~k~~~Dn~i~l~~v~  395 (561)
T COG5354         368 SPDGQFYDTDTTSEKLRVDNSIKLWDVY  395 (561)
T ss_pred             cCCceEEEecCCCcccccCcceEEEEec
Confidence            99999876533      37789999974

>KOG2041 consensus WD40 repeat protein [General function prediction only]

Probab=99.23  E-value=4.2e-09  Score=91.59  Aligned_cols=276  Identities=14%  Similarity=0.190  Sum_probs=181.5

Q ss_pred             ccceEEEEEeecCCCCCcEEEEeeCCCcEEEEcCCCC---------------cceeeccccccceEEEEeCCCCCEEEEe
Q 021247           14 EESVWAVTWVPATETRPALLLTGSLDETVKLWRPDDM---------------QLERTNTGHCLGVVSVAAHPSGIIAASA   78 (315)
Q Consensus        14 ~~~v~~v~~~~~~~~~~~~l~sgs~d~~v~~w~~~~~---------------~~~~~~~~h~~~v~~~~~~~~g~~l~s~   78 (315)
                      .-...|++|.-.    ..+++.|+.||.+++....+.               .+.+.+.||...|.-+.|+...+.|.+.
T Consensus        14 nvkL~c~~WNke----~gyIAcgG~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeGH~~sV~vvTWNe~~QKLTtS   89 (1189)
T KOG2041|consen   14 NVKLHCAEWNKE----SGYIACGGADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEGHNASVMVVTWNENNQKLTTS   89 (1189)
T ss_pred             CceEEEEEEccc----CCeEEeccccceeEEEEccccCCcccccccccccccchhhhhccCcceEEEEEecccccccccc
Confidence            356789999754    458999999999999975431               1234567999999999999999999999


Q ss_pred             eCCCeEEEEECCCCceeE--EeeCCcccEEEEEECCCCCeEEEEecCCCeEEEEecCCcceeeeecCCCCCCCCCCccCC
Q 021247           79 SLDSFVRVFDVDTNASIA--TLEASPSEVWQMQFDPKGTTLAVAGGGSASVKLWDTATWNLIATLSIPRPEGLKPTDKSS  156 (315)
Q Consensus        79 ~~d~~i~~w~~~~~~~~~--~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~  156 (315)
                      ..+|.|.+|-+-.++-..  ......+-|.+++|+.+|..+.++ -.||.|.+=.+.. +.+..-.+             
T Consensus        90 Dt~GlIiVWmlykgsW~EEMiNnRnKSvV~SmsWn~dG~kIcIv-YeDGavIVGsvdG-NRIwgKeL-------------  154 (1189)
T KOG2041|consen   90 DTSGLIIVWMLYKGSWCEEMINNRNKSVVVSMSWNLDGTKICIV-YEDGAVIVGSVDG-NRIWGKEL-------------  154 (1189)
T ss_pred             CCCceEEEEeeecccHHHHHhhCcCccEEEEEEEcCCCcEEEEE-EccCCEEEEeecc-ceecchhc-------------
Confidence            999999999998775322  122234568899999999887654 4667665544332 22211100             


Q ss_pred             CCcceEEEEECCCCCEEEEecCCCcEEEEEcccce-------eeeee----cCCccceEEEEEc-------CCCCcEEEE
Q 021247          157 SKKFVLSVAWSPDGRRIACGSMDGTISVFDVTRAK-------FLHHL----EGHFMPVRSLVYS-------PVDPRVLFS  218 (315)
Q Consensus       157 ~~~~i~~~~~~~~~~~l~~~s~dg~i~i~d~~~~~-------~~~~~----~~~~~~v~~~~~~-------~~~~~~l~s  218 (315)
                      .......+.|++|.+.++.+-.+|.+.+||...+-       +....    ......+..+.|.       |.+...|+.
T Consensus       155 kg~~l~hv~ws~D~~~~Lf~~ange~hlydnqgnF~~Kl~~~c~Vn~tg~~s~~~~kia~i~w~~g~~~~v~pdrP~lav  234 (1189)
T KOG2041|consen  155 KGQLLAHVLWSEDLEQALFKKANGETHLYDNQGNFERKLEKDCEVNGTGIFSNFPTKIAEIEWNTGPYQPVPPDRPRLAV  234 (1189)
T ss_pred             chheccceeecccHHHHHhhhcCCcEEEecccccHHHhhhhceEEeeeeeecCCCccccceeeccCccccCCCCCCEEEE
Confidence            01124578999999999888899999999964321       00011    1111123344443       335568889


Q ss_pred             EeCCCeEEEEeCCCCeeEEEeecccccEEEEEEcCCCCeEEEEeCCC---------cEEEEecCccceehcccccccceE
Q 021247          219 ASDDTHVHMYDAEGKSLVTAMSGHASWVLSVDASPDGAAITTGSSDR---------TVKLWDLNMRAAMQSMTNHTDQVW  289 (315)
Q Consensus       219 ~~~d~~i~~wd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~d~---------~i~iwd~~~~~~~~~~~~~~~~v~  289 (315)
                      +-..|.+.+-...+......+. -.-.|....|+++|..|+.+|.+.         .|.++. ..|+.+.++......|+
T Consensus       235 cy~nGr~QiMR~eND~~Pvv~d-tgm~~vgakWnh~G~vLAvcG~~~da~~~~d~n~v~Fys-p~G~i~gtlkvpg~~It  312 (1189)
T KOG2041|consen  235 CYANGRMQIMRSENDPEPVVVD-TGMKIVGAKWNHNGAVLAVCGNDSDADEPTDSNKVHFYS-PYGHIVGTLKVPGSCIT  312 (1189)
T ss_pred             EEcCceehhhhhcCCCCCeEEe-cccEeecceecCCCcEEEEccCcccccCccccceEEEec-cchhheEEEecCCceee
Confidence            9999988776544322221111 125678899999999999998753         344443 33566667766677899


Q ss_pred             EEEEeeCCCEEEEEeCCCcEEE
Q 021247          290 GVSFRPLGGRVVSVSDDKSISL  311 (315)
Q Consensus       290 ~~~~s~~~~~l~s~~~d~~i~i  311 (315)
                      +++|-..|-+++- ..|+.|.+
T Consensus       313 ~lsWEg~gLriA~-Avdsfiyf  333 (1189)
T KOG2041|consen  313 GLSWEGTGLRIAI-AVDSFIYF  333 (1189)
T ss_pred             eeEEcCCceEEEE-EecceEEE
Confidence            9999876655543 34455543

>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]

Probab=99.22  E-value=7.8e-09  Score=79.75  Aligned_cols=244  Identities=13%  Similarity=0.079  Sum_probs=148.4

Q ss_pred             EEEEEeecCCC-CCcEEEEeeCCCcEEEEcCCCCc-ceeeccccccceEEEEeCCC-CCEEEEeeCCCeEEEEECCCCce
Q 021247           18 WAVTWVPATET-RPALLLTGSLDETVKLWRPDDMQ-LERTNTGHCLGVVSVAAHPS-GIIAASASLDSFVRVFDVDTNAS   94 (315)
Q Consensus        18 ~~v~~~~~~~~-~~~~l~sgs~d~~v~~w~~~~~~-~~~~~~~h~~~v~~~~~~~~-g~~l~s~~~d~~i~~w~~~~~~~   94 (315)
                      .++.|-|..-. -..+|+.|+.-|...+|.+.+.+ ..+....|...|.-+.-..+ ...+..++.|.++++.++..+..
T Consensus        71 ~g~~F~p~s~~~kc~~la~gG~~g~fd~~~~~tn~~h~~~cd~snn~v~~~~r~cd~~~~~~i~sndht~k~~~~~~~s~  150 (344)
T KOG4532|consen   71 TGMTFTPGSFINKCVTLADGGASGQFDLFACNTNDGHLYQCDVSNNDVTLVKRYCDLKFPLNIASNDHTGKTMVVSGDSN  150 (344)
T ss_pred             ecccccchHhhccccEEEeccccceeeeecccCcccceeeecccccchhhhhhhcccccceeeccCCcceeEEEEecCcc
Confidence            34556664321 12479999999999999987544 33444445544433221111 23455678899999988876543


Q ss_pred             eEEeeCCcccEEEEEECCCCCeEEEEecCCCeEEEEecCCcc-eeeeecCCCCCCCCCCccCCCCcceEEEEECCCCCEE
Q 021247           95 IATLEASPSEVWQMQFDPKGTTLAVAGGGSASVKLWDTATWN-LIATLSIPRPEGLKPTDKSSSKKFVLSVAWSPDGRRI  173 (315)
Q Consensus        95 ~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~~d~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l  173 (315)
                      ...+-...-.+..+.++++++.. ++-++...|..|.+.... .+..+..      .+     ..+.--+..|+.....+
T Consensus       151 ~~~~h~~~~~~ns~~~snd~~~~-~~Vgds~~Vf~y~id~~sey~~~~~~------a~-----t~D~gF~~S~s~~~~~F  218 (344)
T KOG4532|consen  151 KFAVHNQNLTQNSLHYSNDPSWG-SSVGDSRRVFRYAIDDESEYIENIYE------AP-----TSDHGFYNSFSENDLQF  218 (344)
T ss_pred             cceeeccccceeeeEEcCCCceE-EEecCCCcceEEEeCCccceeeeeEe------cc-----cCCCceeeeeccCcceE
Confidence            22221111237788999998865 445667888888876522 1211111      00     11123467889989999


Q ss_pred             EEecCCCcEEEEEcccceee-----eeecCCccceEEEEEcCCCCc-EEEEEeCCCeEEEEeCCCCeeEEEee-------
Q 021247          174 ACGSMDGTISVFDVTRAKFL-----HHLEGHFMPVRSLVYSPVDPR-VLFSASDDTHVHMYDAEGKSLVTAMS-------  240 (315)
Q Consensus       174 ~~~s~dg~i~i~d~~~~~~~-----~~~~~~~~~v~~~~~~~~~~~-~l~s~~~d~~i~~wd~~~~~~~~~~~-------  240 (315)
                      |++++||.+.|||++.....     ..-..|++.++.+.|+|.+.- +|+-.-.-+.+++-|+++....+.+.       
T Consensus       219 Av~~Qdg~~~I~DVR~~~tpm~~~sstrp~hnGa~R~c~Fsl~g~lDLLf~sEhfs~~hv~D~R~~~~~q~I~i~~d~~~  298 (344)
T KOG4532|consen  219 AVVFQDGTCAIYDVRNMATPMAEISSTRPHHNGAFRVCRFSLYGLLDLLFISEHFSRVHVVDTRNYVNHQVIVIPDDVER  298 (344)
T ss_pred             EEEecCCcEEEEEecccccchhhhcccCCCCCCceEEEEecCCCcceEEEEecCcceEEEEEcccCceeeEEecCccccc
Confidence            99999999999999754322     122358999999999985443 44444456789999998875443332       


Q ss_pred             ccc-ccEEEEEEcCCCCeEEEEeCCCcEEEEecCc
Q 021247          241 GHA-SWVLSVDASPDGAAITTGSSDRTVKLWDLNM  274 (315)
Q Consensus       241 ~~~-~~i~~~~~~~~~~~l~s~~~d~~i~iwd~~~  274 (315)
                      .|. ..|..-.|+.++..+.+...+ .+.-|++.+
T Consensus       299 ~~~tq~ifgt~f~~~n~s~~v~~e~-~~ae~ni~s  332 (344)
T KOG4532|consen  299 KHNTQHIFGTNFNNENESNDVKNEL-QGAEYNILS  332 (344)
T ss_pred             cccccccccccccCCCcccccccch-hhheeeccc
Confidence            222 226666666666555444433 244555544

>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]

Probab=99.22  E-value=1.4e-08  Score=85.88  Aligned_cols=278  Identities=15%  Similarity=0.215  Sum_probs=163.3

Q ss_pred             ceEEEEEeecCCCCCcEEEEeeCC-----------CcEEEEcCCCCcceeecccc--ccce-EEEEeCCCCCEEEEeeCC
Q 021247           16 SVWAVTWVPATETRPALLLTGSLD-----------ETVKLWRPDDMQLERTNTGH--CLGV-VSVAAHPSGIIAASASLD   81 (315)
Q Consensus        16 ~v~~v~~~~~~~~~~~~l~sgs~d-----------~~v~~w~~~~~~~~~~~~~h--~~~v-~~~~~~~~g~~l~s~~~d   81 (315)
                      .|-=+.|+|..    .+|+|-|..           ..+.|||..++.+.+.++..  ...+ .-..||.+++++|....|
T Consensus       251 ~Vq~idfSP~E----kYLVT~s~~p~~~~~~d~e~~~l~IWDI~tG~lkrsF~~~~~~~~~WP~frWS~DdKy~Arm~~~  326 (698)
T KOG2314|consen  251 GVQFIDFSPNE----KYLVTYSPEPIIVEEDDNEGQQLIIWDIATGLLKRSFPVIKSPYLKWPIFRWSHDDKYFARMTGN  326 (698)
T ss_pred             CceeeecCCcc----ceEEEecCCccccCcccCCCceEEEEEccccchhcceeccCCCccccceEEeccCCceeEEeccc
Confidence            45556666654    478887752           46899999998877766542  2222 234789999999987765


Q ss_pred             CeEEEEECCCCceeEEeeCCcccEEEEEECCCCCeEEEEecCC----CeEEEEecCCcceeeeecCCCCCCCCCCccCCC
Q 021247           82 SFVRVFDVDTNASIATLEASPSEVWQMQFDPKGTTLAVAGGGS----ASVKLWDTATWNLIATLSIPRPEGLKPTDKSSS  157 (315)
Q Consensus        82 ~~i~~w~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d----~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~  157 (315)
                       +|.|++..+-..+..-......|....|+|.++.+++-.-..    ..+.+..+.++..+.+.++..-           
T Consensus       327 -sisIyEtpsf~lld~Kslki~gIr~FswsP~~~llAYwtpe~~~~parvtL~evPs~~~iRt~nlfnV-----------  394 (698)
T KOG2314|consen  327 -SISIYETPSFMLLDKKSLKISGIRDFSWSPTSNLLAYWTPETNNIPARVTLMEVPSKREIRTKNLFNV-----------  394 (698)
T ss_pred             -eEEEEecCceeeecccccCCccccCcccCCCcceEEEEcccccCCcceEEEEecCccceeeeccceee-----------
Confidence             588988766433322222335577778999877554422211    2233333333333322221110           


Q ss_pred             CcceEEEEECCCCCEEEEecC-------CC---cEEEEEcccceeeeeecCCccceEEEEEcCCCCcEEEEEeCC--CeE
Q 021247          158 KKFVLSVAWSPDGRRIACGSM-------DG---TISVFDVTRAKFLHHLEGHFMPVRSLVYSPVDPRVLFSASDD--THV  225 (315)
Q Consensus       158 ~~~i~~~~~~~~~~~l~~~s~-------dg---~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d--~~i  225 (315)
                        .=..+-|-.+|.+|+.--.       .|   .+-|+.++.....-....-...|..++|.|.+.++.+-.+.+  .++
T Consensus       395 --sDckLhWQk~gdyLcvkvdR~tK~~~~g~f~n~eIfrireKdIpve~velke~vi~FaWEP~gdkF~vi~g~~~k~tv  472 (698)
T KOG2314|consen  395 --SDCKLHWQKSGDYLCVKVDRHTKSKVKGQFSNLEIFRIREKDIPVEVVELKESVIAFAWEPHGDKFAVISGNTVKNTV  472 (698)
T ss_pred             --eccEEEeccCCcEEEEEEEeeccccccceEeeEEEEEeeccCCCceeeecchheeeeeeccCCCeEEEEEccccccce
Confidence              0123556667777765321       11   244444443332212222345788999999766655544443  567


Q ss_pred             EEEeCCC----CeeEEEeecccccEEEEEEcCCCCeEEEEe---CCCcEEEEecCccceehc-ccccccceEEEEEeeCC
Q 021247          226 HMYDAEG----KSLVTAMSGHASWVLSVDASPDGAAITTGS---SDRTVKLWDLNMRAAMQS-MTNHTDQVWGVSFRPLG  297 (315)
Q Consensus       226 ~~wd~~~----~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~---~d~~i~iwd~~~~~~~~~-~~~~~~~v~~~~~s~~~  297 (315)
                      .+|..+.    .+++..+..  ...+.+-|+|.|++++.+.   ..|.+.++|........+ ...|. ..+.+.|.|.|
T Consensus       473 sfY~~e~~~~~~~lVk~~dk--~~~N~vfwsPkG~fvvva~l~s~~g~l~F~D~~~a~~k~~~~~eh~-~at~veWDPtG  549 (698)
T KOG2314|consen  473 SFYAVETNIKKPSLVKELDK--KFANTVFWSPKGRFVVVAALVSRRGDLEFYDTDYADLKDTASPEHF-AATEVEWDPTG  549 (698)
T ss_pred             eEEEeecCCCchhhhhhhcc--cccceEEEcCCCcEEEEEEecccccceEEEecchhhhhhccCcccc-ccccceECCCC
Confidence            8887663    123333332  3467899999999887764   468899999875332222 22343 45678999999


Q ss_pred             CEEEEEeC------CCcEEEeec
Q 021247          298 GRVVSVSD------DKSISLYEY  314 (315)
Q Consensus       298 ~~l~s~~~------d~~i~i~~~  314 (315)
                      +|+++++.      |.-.+||++
T Consensus       550 RYvvT~ss~wrhk~d~GYri~tf  572 (698)
T KOG2314|consen  550 RYVVTSSSSWRHKVDNGYRIFTF  572 (698)
T ss_pred             CEEEEeeehhhhccccceEEEEe
Confidence            99998876      445566654

>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation []

Probab=99.20  E-value=1.2e-07  Score=89.25  Aligned_cols=270  Identities=19%  Similarity=0.284  Sum_probs=164.1

Q ss_pred             ccccceEEEEEeecCCCCCcEEEEeeCCCcEEEEcC------------CCCc---c--------eeeccc----------
Q 021247           12 AHEESVWAVTWVPATETRPALLLTGSLDETVKLWRP------------DDMQ---L--------ERTNTG----------   58 (315)
Q Consensus        12 ~h~~~v~~v~~~~~~~~~~~~l~sgs~d~~v~~w~~------------~~~~---~--------~~~~~~----------   58 (315)
                      .-+..|.+++|+|+..    +|+....++++.+-.-            +...   .        ..++.|          
T Consensus       118 ~vd~GI~a~~WSPD~E----lla~vT~~~~l~~mt~~fd~i~E~~l~~~~~~~~~~VsVGWGkKeTQF~Gs~gK~aa~~~  193 (928)
T PF04762_consen  118 SVDSGILAASWSPDEE----LLALVTGEGNLLLMTRDFDPISEVPLDSDDFGESKHVSVGWGKKETQFHGSAGKAAARQL  193 (928)
T ss_pred             EEcCcEEEEEECCCcC----EEEEEeCCCEEEEEeccceEEEEeecCccccCCCceeeeccCcccCccCcchhhhhhhhc
Confidence            4467899999999886    5777777777765531            0000   0        001100          


Q ss_pred             --------------cccceEEEEeCCCCCEEEEeeC------CCeEEEEECCCCceeEEeeCCcccEEEEEECCCCCeEE
Q 021247           59 --------------HCLGVVSVAAHPSGIIAASASL------DSFVRVFDVDTNASIATLEASPSEVWQMQFDPKGTTLA  118 (315)
Q Consensus        59 --------------h~~~v~~~~~~~~g~~l~s~~~------d~~i~~w~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~  118 (315)
                                    +...-..++|-.||.++|..+.      -+.+|||+-+ |....+-+.-.+--..++|.|+|+.++
T Consensus       194 ~~p~~~~~d~~~~s~dd~~~~ISWRGDG~yFAVss~~~~~~~~R~iRVy~Re-G~L~stSE~v~gLe~~l~WrPsG~lIA  272 (928)
T PF04762_consen  194 RDPTVPKVDEGKLSWDDGRVRISWRGDGEYFAVSSVEPETGSRRVIRVYSRE-GELQSTSEPVDGLEGALSWRPSGNLIA  272 (928)
T ss_pred             cCCCCCccccCccccCCCceEEEECCCCcEEEEEEEEcCCCceeEEEEECCC-ceEEeccccCCCccCCccCCCCCCEEE
Confidence                          2224467889999999987654      3679999965 444333333333344789999999665


Q ss_pred             EEec--CCCeEEEEecCCcceeeeecCCCCCCCCCCccCCCCcceEEEEECCCCCEEEEecCCCcEEEEEcccceeeeee
Q 021247          119 VAGG--GSASVKLWDTATWNLIATLSIPRPEGLKPTDKSSSKKFVLSVAWSPDGRRIACGSMDGTISVFDVTRAKFLHHL  196 (315)
Q Consensus       119 ~~~~--~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~s~dg~i~i~d~~~~~~~~~~  196 (315)
                      .+--  ....|.+|.-. |-....+.++..         .....|..+.|++++..||.-..|. |.+|-..+-....+.
T Consensus       273 ~~q~~~~~~~VvFfErN-GLrhgeF~l~~~---------~~~~~v~~l~Wn~ds~iLAv~~~~~-vqLWt~~NYHWYLKq  341 (928)
T PF04762_consen  273 SSQRLPDRHDVVFFERN-GLRHGEFTLRFD---------PEEEKVIELAWNSDSEILAVWLEDR-VQLWTRSNYHWYLKQ  341 (928)
T ss_pred             EEEEcCCCcEEEEEecC-CcEeeeEecCCC---------CCCceeeEEEECCCCCEEEEEecCC-ceEEEeeCCEEEEEE
Confidence            4332  12345555532 222333333321         1233478999999999999876554 999988766544332


Q ss_pred             cC---CccceEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCeeEEEeecccccEEEEEEc----CCC-CeEEEEeCCCcEE
Q 021247          197 EG---HFMPVRSLVYSPVDPRVLFSASDDTHVHMYDAEGKSLVTAMSGHASWVLSVDAS----PDG-AAITTGSSDRTVK  268 (315)
Q Consensus       197 ~~---~~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~i~~~~~~----~~~-~~l~s~~~d~~i~  268 (315)
                      .-   ....+..+.|+|.++..|.....++.+..++..               +.+..+    |+. ..+++. ...+++
T Consensus       342 ei~~~~~~~~~~~~Wdpe~p~~L~v~t~~g~~~~~~~~---------------~~v~~s~~~~~~D~g~vaVI-DG~~ll  405 (928)
T PF04762_consen  342 EIRFSSSESVNFVKWDPEKPLRLHVLTSNGQYEIYDFA---------------WDVSRSPGSSPNDNGTVAVI-DGNKLL  405 (928)
T ss_pred             EEEccCCCCCCceEECCCCCCEEEEEecCCcEEEEEEE---------------EEEEecCCCCccCceEEEEE-eCCeEE
Confidence            21   223345599999888888888776776665532               112222    111 122222 223466


Q ss_pred             EEecCccce---e--hcccccccceEEEEEeeCCCEEEEEeCCCcEEEeec
Q 021247          269 LWDLNMRAA---M--QSMTNHTDQVWGVSFRPLGGRVVSVSDDKSISLYEY  314 (315)
Q Consensus       269 iwd~~~~~~---~--~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~i~i~~~  314 (315)
                      +-.++..-.   +  ..+. -..+|.+++|++++..+++...||+|.+|.+
T Consensus       406 lTpf~~a~VPPPMs~~~l~-~~~~v~~vaf~~~~~~~avl~~d~~l~~~~~  455 (928)
T PF04762_consen  406 LTPFRRAVVPPPMSSYELE-LPSPVNDVAFSPSNSRFAVLTSDGSLSIYEW  455 (928)
T ss_pred             EecccccCCCchHhceEEc-CCCCcEEEEEeCCCCeEEEEECCCCEEEEEe
Confidence            666654321   1  1222 2368999999999989999999999999985

>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]

Probab=99.20  E-value=1.6e-08  Score=84.55  Aligned_cols=276  Identities=13%  Similarity=0.126  Sum_probs=171.9

Q ss_pred             cccceEEEEEeecCCCCCcEEEEeeCCCcEEEEcCCCCcceeeccccccceEEEEeCCCCCEEEEeeCCC----------
Q 021247           13 HEESVWAVTWVPATETRPALLLTGSLDETVKLWRPDDMQLERTNTGHCLGVVSVAAHPSGIIAASASLDS----------   82 (315)
Q Consensus        13 h~~~v~~v~~~~~~~~~~~~l~sgs~d~~v~~w~~~~~~~~~~~~~h~~~v~~~~~~~~g~~l~s~~~d~----------   82 (315)
                      -.-++..+.|+|.+.    +|++ ..-..|.+|..........+.  ...|..+.|+|.+++|.+=+...          
T Consensus        31 ~~~p~~~~~~SP~G~----~l~~-~~~~~V~~~~g~~~~~l~~~~--~~~V~~~~fSP~~kYL~tw~~~pi~~pe~e~sp  103 (561)
T COG5354          31 ENWPVAYVSESPLGT----YLFS-EHAAGVECWGGPSKAKLVRFR--HPDVKYLDFSPNEKYLVTWSREPIIEPEIEISP  103 (561)
T ss_pred             cCcchhheeecCcch----heeh-hhccceEEccccchhheeeee--cCCceecccCcccceeeeeccCCccChhhccCC
Confidence            345788888998775    3444 444568889765544333332  34688999999999998754333          


Q ss_pred             -----eEEEEECCCCceeEEeeCCccc--EE-EEEECCCCCeEEEEecCCCeEEEEecCCcceeeeecCCCCCCCCCCcc
Q 021247           83 -----FVRVFDVDTNASIATLEASPSE--VW-QMQFDPKGTTLAVAGGGSASVKLWDTATWNLIATLSIPRPEGLKPTDK  154 (315)
Q Consensus        83 -----~i~~w~~~~~~~~~~~~~~~~~--v~-~~~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~  154 (315)
                           .+.+||+.++..+..+.....+  .| -+.|+-+.++.+-.  ....+.++++ +.+...    ...       +
T Consensus       104 ~~~~n~~~vwd~~sg~iv~sf~~~~q~~~~Wp~~k~s~~D~y~ARv--v~~sl~i~e~-t~n~~~----~p~-------~  169 (561)
T COG5354         104 FTSKNNVFVWDIASGMIVFSFNGISQPYLGWPVLKFSIDDKYVARV--VGSSLYIHEI-TDNIEE----HPF-------K  169 (561)
T ss_pred             ccccCceeEEeccCceeEeeccccCCcccccceeeeeecchhhhhh--ccCeEEEEec-CCcccc----Cch-------h
Confidence                 4999999999988887766665  66 77888877754322  3357888886 332210    000       0


Q ss_pred             CCCCcceEEEEECCCCC--EEEE-----ecCCCcEEEEEcccceeeeeecCCccceEEEEEcCCCCcEEEEEe-------
Q 021247          155 SSSKKFVLSVAWSPDGR--RIAC-----GSMDGTISVFDVTRAKFLHHLEGHFMPVRSLVYSPVDPRVLFSAS-------  220 (315)
Q Consensus       155 ~~~~~~i~~~~~~~~~~--~l~~-----~s~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~-------  220 (315)
                      ......|....|+|.++  .|+.     ....+++++|.+..++.+..-.--+-.-..+.|.+.+..+++-.-       
T Consensus       170 ~lr~~gi~dFsisP~~n~~~la~~tPEk~~kpa~~~i~sIp~~s~l~tk~lfk~~~~qLkW~~~g~~ll~l~~t~~ksnK  249 (561)
T COG5354         170 NLRPVGILDFSISPEGNHDELAYWTPEKLNKPAMVRILSIPKNSVLVTKNLFKVSGVQLKWQVLGKYLLVLVMTHTKSNK  249 (561)
T ss_pred             hccccceeeEEecCCCCCceEEEEccccCCCCcEEEEEEccCCCeeeeeeeEeecccEEEEecCCceEEEEEEEeeeccc
Confidence            01123478888998643  4443     346778999998766554332211122245778775554443221       


Q ss_pred             ---CCCeEEEEeCCCCeeEEEeecccccEEEEEEcCCCCeEEEE--eCCCcEEEEecCccceehcccccccceEEEEEee
Q 021247          221 ---DDTHVHMYDAEGKSLVTAMSGHASWVLSVDASPDGAAITTG--SSDRTVKLWDLNMRAAMQSMTNHTDQVWGVSFRP  295 (315)
Q Consensus       221 ---~d~~i~~wd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~--~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~  295 (315)
                         .+..+++++++...+.... .-.++|.+..|.|.++-+++.  -.+-.+.++|++.. ....+  ..+.=+.+.|||
T Consensus       250 syfgesnLyl~~~~e~~i~V~~-~~~~pVhdf~W~p~S~~F~vi~g~~pa~~s~~~lr~N-l~~~~--Pe~~rNT~~fsp  325 (561)
T COG5354         250 SYFGESNLYLLRITERSIPVEK-DLKDPVHDFTWEPLSSRFAVISGYMPASVSVFDLRGN-LRFYF--PEQKRNTIFFSP  325 (561)
T ss_pred             ceeccceEEEEeecccccceec-cccccceeeeecccCCceeEEecccccceeecccccc-eEEec--CCcccccccccC
Confidence               1345788888765544433 457889999999988766544  46788999998754 22222  222333456788


Q ss_pred             CCCEEEEEeCC---CcEEEee
Q 021247          296 LGGRVVSVSDD---KSISLYE  313 (315)
Q Consensus       296 ~~~~l~s~~~d---~~i~i~~  313 (315)
                      .+++++.+|-|   |.|-+|+
T Consensus       326 ~~r~il~agF~nl~gni~i~~  346 (561)
T COG5354         326 HERYILFAGFDNLQGNIEIFD  346 (561)
T ss_pred             cccEEEEecCCccccceEEec
Confidence            88877776655   5666665

>KOG4190 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.20  E-value=9.6e-11  Score=98.74  Aligned_cols=212  Identities=17%  Similarity=0.250  Sum_probs=150.4

Q ss_pred             ccccccceEEEEeCCCCCEEEEeeCCCeEEEEECCCC-------ceeEEeeCCcccEEEEEECCCCCeEEEEecCCCeEE
Q 021247           56 NTGHCLGVVSVAAHPSGIIAASASLDSFVRVFDVDTN-------ASIATLEASPSEVWQMQFDPKGTTLAVAGGGSASVK  128 (315)
Q Consensus        56 ~~~h~~~v~~~~~~~~g~~l~s~~~d~~i~~w~~~~~-------~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~  128 (315)
                      +.||...|..++.-.+.+.+++++.|+++++|.++..       .+..++..|..+|..+-|-.+-+++ +  +-|+.|.
T Consensus       731 f~GH~~~iRai~AidNENSFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL~~lr~i-~--ScD~giH  807 (1034)
T KOG4190|consen  731 FTGHQEKIRAIAAIDNENSFISASKDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFLADLRSI-A--SCDGGIH  807 (1034)
T ss_pred             ccCcHHHhHHHHhcccccceeeccCCceEEEEEeccccCccccceeeeEhhhccCcccceeeeecccee-e--eccCcce
Confidence            4689888988887778889999999999999998753       3566788899999999998776654 2  4589999


Q ss_pred             EEecCCcceeeeecCCCCCCCCCCccCCCCcceEEEEECCCCCEEEEe-cCCCcEEEEEcccceeeeeec-----CCccc
Q 021247          129 LWDTATWNLIATLSIPRPEGLKPTDKSSSKKFVLSVAWSPDGRRIACG-SMDGTISVFDVTRAKFLHHLE-----GHFMP  202 (315)
Q Consensus       129 ~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-s~dg~i~i~d~~~~~~~~~~~-----~~~~~  202 (315)
                      +||---+.++....-...        .+....|.++. +-+...+.+| +...+|+++|.+.+.....++     +.+..
T Consensus       808 lWDPFigr~Laq~~dapk--------~~a~~~ikcl~-nv~~~iliAgcsaeSTVKl~DaRsce~~~E~kVcna~~Pna~  878 (1034)
T KOG4190|consen  808 LWDPFIGRLLAQMEDAPK--------EGAGGNIKCLE-NVDRHILIAGCSAESTVKLFDARSCEWTCELKVCNAPGPNAL  878 (1034)
T ss_pred             eecccccchhHhhhcCcc--------cCCCceeEecc-cCcchheeeeccchhhheeeecccccceeeEEeccCCCCchh
Confidence            999765555432211111        11111132222 2244555544 788999999999887766654     33456


Q ss_pred             eEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCeeEEEeecccccEEEEEEcCCCCeEEEEeCCCcEEE-EecCccceehcc
Q 021247          203 VRSLVYSPVDPRVLFSASDDTHVHMYDAEGKSLVTAMSGHASWVLSVDASPDGAAITTGSSDRTVKL-WDLNMRAAMQSM  281 (315)
Q Consensus       203 v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~d~~i~i-wd~~~~~~~~~~  281 (315)
                      +++++..| .++.++.+-..|.|.+.|.++++.+...+........++ .|..+.|+....|.++.+ |..-.+....+.
T Consensus       879 ~R~iaVa~-~GN~lAa~LSnGci~~LDaR~G~vINswrpmecdllqla-apsdq~L~~saldHslaVnWhaldgimh~q~  956 (1034)
T KOG4190|consen  879 TRAIAVAD-KGNKLAAALSNGCIAILDARNGKVINSWRPMECDLLQLA-APSDQALAQSALDHSLAVNWHALDGIMHLQD  956 (1034)
T ss_pred             eeEEEecc-CcchhhHHhcCCcEEEEecCCCceeccCCcccchhhhhc-CchhHHHHhhcccceeEeeehhcCCeeeecc
Confidence            88999887 677899999999999999999988776655444444444 355677888888999988 977666554443

>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.20  E-value=2.7e-10  Score=98.99  Aligned_cols=282  Identities=18%  Similarity=0.236  Sum_probs=175.9

Q ss_pred             ccceEEEEEeecCCCCCcEEEEeeCCCcEEEEcCCCC-cceeeccccc--cceEEEEeCCCC---CEEEEeeCCCeEEEE
Q 021247           14 EESVWAVTWVPATETRPALLLTGSLDETVKLWRPDDM-QLERTNTGHC--LGVVSVAAHPSG---IIAASASLDSFVRVF   87 (315)
Q Consensus        14 ~~~v~~v~~~~~~~~~~~~l~sgs~d~~v~~w~~~~~-~~~~~~~~h~--~~v~~~~~~~~g---~~l~s~~~d~~i~~w   87 (315)
                      ...+.++.-+|.+..    ++.++.-|-. +.|.+.. ...+.+ -|.  -.|-..+|+|..   ..+++.+.. .-.+|
T Consensus        24 ~~~~~a~si~p~grd----i~lAsr~gl~-i~dld~p~~ppr~l-~h~tpw~vad~qws~h~a~~~wiVsts~q-kaiiw   96 (1081)
T KOG0309|consen   24 DGGFNAVSINPSGRD----IVLASRQGLY-IIDLDDPFTPPRWL-HHITPWQVADVQWSPHPAKPYWIVSTSNQ-KAIIW   96 (1081)
T ss_pred             cCcccceeeccccch----hhhhhhcCeE-EEeccCCCCCceee-eccCcchhcceecccCCCCceeEEecCcc-hhhhh
Confidence            457778888888765    6777765543 3344322 111111 121  134455565543   344444443 45588


Q ss_pred             ECCCCc--eeE-EeeCCcccEEEEEECCCCCeEEEEecCCCeEEEEecCCccee-eeecCCCCCCCCCCccCCCCcceEE
Q 021247           88 DVDTNA--SIA-TLEASPSEVWQMQFDPKGTTLAVAGGGSASVKLWDTATWNLI-ATLSIPRPEGLKPTDKSSSKKFVLS  163 (315)
Q Consensus        88 ~~~~~~--~~~-~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~i~~  163 (315)
                      ++....  .+. .+-+|...+..+.|+|+...++++++.|..+..||+++-... ..+             ......-..
T Consensus        97 nlA~ss~~aIef~lhghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~~p~ys~-------------~~w~s~asq  163 (1081)
T KOG0309|consen   97 NLAKSSSNAIEFVLHGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSPHRPFYST-------------SSWRSAASQ  163 (1081)
T ss_pred             hhhcCCccceEEEEecCccceeccccCCCCCcceeeccccccceeeeccCCCcceeee-------------ecccccCce
Confidence            876432  333 345677889999999999999999999999999999863211 111             111112346


Q ss_pred             EEECCCCCEEEEecCCCcEEEEEcccc-eeeeeecCCccceEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCe-eEEEeec
Q 021247          164 VAWSPDGRRIACGSMDGTISVFDVTRA-KFLHHLEGHFMPVRSLVYSPVDPRVLFSASDDTHVHMYDAEGKS-LVTAMSG  241 (315)
Q Consensus       164 ~~~~~~~~~l~~~s~dg~i~i~d~~~~-~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~-~~~~~~~  241 (315)
                      +.|+-....+.+.+..+.|++||++.+ .++..+++|...|+.+.|....-..+.+++.|++++.||..... .-.....
T Consensus       164 Vkwnyk~p~vlasshg~~i~vwd~r~gs~pl~s~K~~vs~vn~~~fnr~~~s~~~s~~~d~tvkfw~y~kSt~e~~~~vt  243 (1081)
T KOG0309|consen  164 VKWNYKDPNVLASSHGNDIFVWDLRKGSTPLCSLKGHVSSVNSIDFNRFKYSEIMSSSNDGTVKFWDYSKSTTESKRTVT  243 (1081)
T ss_pred             eeecccCcchhhhccCCceEEEeccCCCcceEEecccceeeehHHHhhhhhhhhcccCCCCceeeecccccccccceecc
Confidence            788765555566667778999999865 56788889999999999987655678999999999999976432 2222223


Q ss_pred             ccccEEEEEEcCCCC--eEEEEeCCCcEEE---------EecCc-cceehcccccccceEEEEEeeCC----------CE
Q 021247          242 HASWVLSVDASPDGA--AITTGSSDRTVKL---------WDLNM-RAAMQSMTNHTDQVWGVSFRPLG----------GR  299 (315)
Q Consensus       242 ~~~~i~~~~~~~~~~--~l~s~~~d~~i~i---------wd~~~-~~~~~~~~~~~~~v~~~~~s~~~----------~~  299 (315)
                      ...+|+.-.+-|-|.  ++.---.+..|.+         |+... -.+++++.+|.+.|...-|-..+          -.
T Consensus       244 t~~piw~~r~~Pfg~g~~~mp~~G~n~v~~~~c~n~d~e~n~~~~~~pVh~F~GH~D~V~eFlWR~r~e~~~d~d~rdfQ  323 (1081)
T KOG0309|consen  244 TNFPIWRGRYLPFGEGYCIMPMVGGNMVPQLRCENSDLEWNVFDLNTPVHTFVGHDDVVLEFLWRKRKECDGDYDSRDFQ  323 (1081)
T ss_pred             ccCcceeccccccCceeEeccccCCeeeeeccccchhhhhccccCCcceeeecCcchHHHHHhhhhcccccCCCCcccee
Confidence            345566556666332  2211111123333         33332 24678889998877654443322          25


Q ss_pred             EEEEeCCCcEEEeecC
Q 021247          300 VVSVSDDKSISLYEYS  315 (315)
Q Consensus       300 l~s~~~d~~i~i~~~~  315 (315)
                      |++=+.|.++|+|-++
T Consensus       324 LVTWSkD~~lrlWpI~  339 (1081)
T KOG0309|consen  324 LVTWSKDQTLRLWPID  339 (1081)
T ss_pred             EEEeecCCceEeeecc
Confidence            8999999999999753

>KOG1912 consensus WD40 repeat protein [General function prediction only]

Probab=99.20  E-value=5.3e-08  Score=85.60  Aligned_cols=226  Identities=16%  Similarity=0.132  Sum_probs=144.9

Q ss_pred             cchhhhhhccccceEEEEEeecCC--------CCCcEEEEeeCCCcEEEEcCCCCcceeeccccccceEEEEeCC---CC
Q 021247            4 AGLKSVENAHEESVWAVTWVPATE--------TRPALLLTGSLDETVKLWRPDDMQLERTNTGHCLGVVSVAAHP---SG   72 (315)
Q Consensus         4 ~~~~~~~~~h~~~v~~v~~~~~~~--------~~~~~l~sgs~d~~v~~w~~~~~~~~~~~~~h~~~v~~~~~~~---~g   72 (315)
                      .|..++..-|...|+.|.|.|...        ....+|+++.-.|.|.+||.........+..|..++..++|-+   +.
T Consensus        45 ~q~iqsie~h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~GrIil~d~~~~s~~~~l~~~~~~~qdl~W~~~rd~S  124 (1062)
T KOG1912|consen   45 LQLIQSIELHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADISGRIILVDFVLASVINWLSHSNDSVQDLCWVPARDDS  124 (1062)
T ss_pred             hhhhhccccCccceeEEEeccCCCchhccCccccceeEEeccccCcEEEEEehhhhhhhhhcCCCcchhheeeeeccCcc
Confidence            456677789999999999998631        1335788888889999999887776667777888999888854   33


Q ss_pred             -CEEEEeeCCCeEEEEECCCCceeEEeeCCcccEEEEEECCCC-CeEEEEecCCCeEEEEecC-Ccc---eeeeecCCCC
Q 021247           73 -IIAASASLDSFVRVFDVDTNASIATLEASPSEVWQMQFDPKG-TTLAVAGGGSASVKLWDTA-TWN---LIATLSIPRP  146 (315)
Q Consensus        73 -~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~~~~~~~~d~~i~~~d~~-~~~---~~~~~~~~~~  146 (315)
                       ..|++-..-.++-+||..+|+.+...........+..++|-. +.+.+.+ ..|.+.+-+.- ..+   ..+.+.+..+
T Consensus       125 rd~LlaIh~ss~lvLwntdtG~k~Wk~~ys~~iLs~f~~DPfd~rh~~~l~-s~g~vl~~~~l~~sep~~pgk~~qI~sd  203 (1062)
T KOG1912|consen  125 RDVLLAIHGSSTLVLWNTDTGEKFWKYDYSHEILSCFRVDPFDSRHFCVLG-SKGFVLSCKDLGLSEPDVPGKEFQITSD  203 (1062)
T ss_pred             hheeEEecCCcEEEEEEccCCceeeccccCCcceeeeeeCCCCcceEEEEc-cCceEEEEeccCCCCCCCCceeEEEecC
Confidence             566666777899999999999999888887888889999865 3444444 34555444332 111   1111111111


Q ss_pred             --C----------CCCCCccCCCCcc---eEEEEECCCCCEEEEecCCCcEEEEEcccceeeeeecCCccceEEEEEcCC
Q 021247          147 --E----------GLKPTDKSSSKKF---VLSVAWSPDGRRIACGSMDGTISVFDVTRAKFLHHLEGHFMPVRSLVYSPV  211 (315)
Q Consensus       147 --~----------~~~~~~~~~~~~~---i~~~~~~~~~~~l~~~s~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~  211 (315)
                        .          +...........+   ...++|+|.-+.++-......+.++|++-...+....-..+.+.-+.+-|.
T Consensus       204 ~Sdl~~lere~at~ns~ts~~~sa~fity~a~faf~p~~rn~lfi~~prellv~dle~~~~l~vvpier~~akfv~vlP~  283 (1062)
T KOG1912|consen  204 HSDLAHLERETATGNSTTSTPASAYFITYCAQFAFSPHWRNILFITFPRELLVFDLEYECCLAVVPIERGGAKFVDVLPD  283 (1062)
T ss_pred             ccchhhhhhhhhccccccCCCcchhHHHHHHhhhcChhhhceEEEEeccceEEEcchhhceeEEEEeccCCcceeEeccC
Confidence              0          0000000001111   224677886555555556778999999877666655444444555566664


Q ss_pred             C-CcEEEEEeCCCeEEEEeC
Q 021247          212 D-PRVLFSASDDTHVHMYDA  230 (315)
Q Consensus       212 ~-~~~l~s~~~d~~i~~wd~  230 (315)
                      . ...|++.-.||.+.+|-.
T Consensus       284 ~~rd~LfclH~nG~ltirvr  303 (1062)
T KOG1912|consen  284 PRRDALFCLHSNGRLTIRVR  303 (1062)
T ss_pred             CCcceEEEEecCCeEEEEEe
Confidence            2 335677777888777754

>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species

Probab=99.19  E-value=3.1e-07  Score=74.08  Aligned_cols=222  Identities=16%  Similarity=0.185  Sum_probs=143.9

Q ss_pred             EEEeCC-CCCEEEEeeCCCeEEEEECCCCceeEEeeCCcccEEEEEEC-CCCCeEEEEecCCCeEEEEecCCcceeeeec
Q 021247           65 SVAAHP-SGIIAASASLDSFVRVFDVDTNASIATLEASPSEVWQMQFD-PKGTTLAVAGGGSASVKLWDTATWNLIATLS  142 (315)
Q Consensus        65 ~~~~~~-~g~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~v~~~~~~-~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~  142 (315)
                      ...|.+ ++.++++--..+.|+.|+..++.... +....  ...+.+. ++ ..++++. . +.+.++|..+++......
T Consensus         4 gp~~d~~~g~l~~~D~~~~~i~~~~~~~~~~~~-~~~~~--~~G~~~~~~~-g~l~v~~-~-~~~~~~d~~~g~~~~~~~   77 (246)
T PF08450_consen    4 GPVWDPRDGRLYWVDIPGGRIYRVDPDTGEVEV-IDLPG--PNGMAFDRPD-GRLYVAD-S-GGIAVVDPDTGKVTVLAD   77 (246)
T ss_dssp             EEEEETTTTEEEEEETTTTEEEEEETTTTEEEE-EESSS--EEEEEEECTT-SEEEEEE-T-TCEEEEETTTTEEEEEEE
T ss_pred             ceEEECCCCEEEEEEcCCCEEEEEECCCCeEEE-EecCC--CceEEEEccC-CEEEEEE-c-CceEEEecCCCcEEEEee
Confidence            456776 77788887788999999998875533 33222  5677777 55 4454543 3 455666988775544443


Q ss_pred             CCCCCCCCCCccCCCCcceEEEEECCCCCEEEEecCC--------CcEEEEEcccceeeeeecCCccceEEEEEcCCCCc
Q 021247          143 IPRPEGLKPTDKSSSKKFVLSVAWSPDGRRIACGSMD--------GTISVFDVTRAKFLHHLEGHFMPVRSLVYSPVDPR  214 (315)
Q Consensus       143 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~s~d--------g~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~  214 (315)
                      .+..        .......+.+++.|+|+..++....        |.+..++.. ++..... ......+.++|+|++..
T Consensus        78 ~~~~--------~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~~~~-~~~~~pNGi~~s~dg~~  147 (246)
T PF08450_consen   78 LPDG--------GVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPD-GKVTVVA-DGLGFPNGIAFSPDGKT  147 (246)
T ss_dssp             EETT--------CSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETT-SEEEEEE-EEESSEEEEEEETTSSE
T ss_pred             ccCC--------CcccCCCceEEEcCCCCEEEEecCCCccccccccceEEECCC-CeEEEEe-cCcccccceEECCcchh
Confidence            2111        0123347899999999976765433        567778876 4433222 23445689999996555


Q ss_pred             EEEEEeCCCeEEEEeCCC--Cee-----EEEeecccccEEEEEEcCCCCeEEEEeCCCcEEEEecCccceehcccccccc
Q 021247          215 VLFSASDDTHVHMYDAEG--KSL-----VTAMSGHASWVLSVDASPDGAAITTGSSDRTVKLWDLNMRAAMQSMTNHTDQ  287 (315)
Q Consensus       215 ~l~s~~~d~~i~~wd~~~--~~~-----~~~~~~~~~~i~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~  287 (315)
                      ++++-+..+.|..|+...  ..+     ...+....+..-.++++.+|++.++.-..+.|.+++.+ ++.+..+......
T Consensus       148 lyv~ds~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~l~va~~~~~~I~~~~p~-G~~~~~i~~p~~~  226 (246)
T PF08450_consen  148 LYVADSFNGRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGNLWVADWGGGRIVVFDPD-GKLLREIELPVPR  226 (246)
T ss_dssp             EEEEETTTTEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS-EEEEEETTTEEEEEETT-SCEEEEEE-SSSS
T ss_pred             eeecccccceeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCCCEEEEEcCCCEEEEECCC-ccEEEEEcCCCCC
Confidence            667888889999999752  211     11222223347789999999988888889999999988 7777776665568


Q ss_pred             eEEEEEe-eCCCEEEEE
Q 021247          288 VWGVSFR-PLGGRVVSV  303 (315)
Q Consensus       288 v~~~~~s-~~~~~l~s~  303 (315)
                      +++++|. |+.+.|+..
T Consensus       227 ~t~~~fgg~~~~~L~vT  243 (246)
T PF08450_consen  227 PTNCAFGGPDGKTLYVT  243 (246)
T ss_dssp             EEEEEEESTTSSEEEEE
T ss_pred             EEEEEEECCCCCEEEEE
Confidence            9999994 666666543

These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....

>PRK04043 tolB translocation protein TolB; Provisional

Probab=99.18  E-value=5.1e-08  Score=84.25  Aligned_cols=208  Identities=13%  Similarity=0.042  Sum_probs=122.7

Q ss_pred             eEEEEECCCCceeEEeeCCcccEEEEEECCCCCe-EEEEecC--CCeEEEEecCCcceeeeecCCCCCCCCCCccCCCCc
Q 021247           83 FVRVFDVDTNASIATLEASPSEVWQMQFDPKGTT-LAVAGGG--SASVKLWDTATWNLIATLSIPRPEGLKPTDKSSSKK  159 (315)
Q Consensus        83 ~i~~w~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-~~~~~~~--d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~  159 (315)
                      .|.+=|..... .+.+... .....-.|+|+++. ++++...  ...|.++|+.+++.......              ..
T Consensus       170 ~l~~~d~dg~~-~~~~~~~-~~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~lt~~--------------~g  233 (419)
T PRK04043        170 NIVLADYTLTY-QKVIVKG-GLNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKKEKIASS--------------QG  233 (419)
T ss_pred             eEEEECCCCCc-eeEEccC-CCeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCcEEEEecC--------------CC
Confidence            44444443332 2323223 36778899999985 5544332  46799999987655433221              11


Q ss_pred             ceEEEEECCCCCEEEE-ecC--CCcEEEEEcccceeeeeecCCccceEEEEEcCCCCcEEEEEeCCC--eEEEEeCCCCe
Q 021247          160 FVLSVAWSPDGRRIAC-GSM--DGTISVFDVTRAKFLHHLEGHFMPVRSLVYSPVDPRVLFSASDDT--HVHMYDAEGKS  234 (315)
Q Consensus       160 ~i~~~~~~~~~~~l~~-~s~--dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~--~i~~wd~~~~~  234 (315)
                      ......|+|||+.++. .+.  +..|+++|+.++.. ..+..+........|+|++.+++++....+  .|.+.|+.+++
T Consensus       234 ~~~~~~~SPDG~~la~~~~~~g~~~Iy~~dl~~g~~-~~LT~~~~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~  312 (419)
T PRK04043        234 MLVVSDVSKDGSKLLLTMAPKGQPDIYLYDTNTKTL-TQITNYPGIDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSGS  312 (419)
T ss_pred             cEEeeEECCCCCEEEEEEccCCCcEEEEEECCCCcE-EEcccCCCccCccEECCCCCEEEEEECCCCCceEEEEECCCCC
Confidence            2446779999987754 333  34688889877653 334333322345579996666666665444  57778887765


Q ss_pred             eEEEeecccccEEEEEEcCCCCeEEEEeCC---------CcEEEEecCccceehcccccccceEEEEEeeCCCEEEEEeC
Q 021247          235 LVTAMSGHASWVLSVDASPDGAAITTGSSD---------RTVKLWDLNMRAAMQSMTNHTDQVWGVSFRPLGGRVVSVSD  305 (315)
Q Consensus       235 ~~~~~~~~~~~i~~~~~~~~~~~l~s~~~d---------~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~  305 (315)
                      ....... ...  ...|+|+|+.++-.+..         ..|.+.|+..+... .+... .......|+|||+.|+....
T Consensus       313 ~~rlt~~-g~~--~~~~SPDG~~Ia~~~~~~~~~~~~~~~~I~v~d~~~g~~~-~LT~~-~~~~~p~~SPDG~~I~f~~~  387 (419)
T PRK04043        313 VEQVVFH-GKN--NSSVSTYKNYIVYSSRETNNEFGKNTFNLYLISTNSDYIR-RLTAN-GVNQFPRFSSDGGSIMFIKY  387 (419)
T ss_pred             eEeCccC-CCc--CceECCCCCEEEEEEcCCCcccCCCCcEEEEEECCCCCeE-ECCCC-CCcCCeEECCCCCEEEEEEc
Confidence            5332221 111  24899999987666543         25777788776542 23322 22335789999998865554


Q ss_pred             C-CcEEEe
Q 021247          306 D-KSISLY  312 (315)
Q Consensus       306 d-~~i~i~  312 (315)
                      + +.-.|+
T Consensus       388 ~~~~~~L~  395 (419)
T PRK04043        388 LGNQSALG  395 (419)
T ss_pred             cCCcEEEE
Confidence            3 333343

>KOG2695 consensus WD40 repeat protein [General function prediction only]

Probab=99.17  E-value=1.1e-10  Score=92.74  Aligned_cols=162  Identities=18%  Similarity=0.207  Sum_probs=117.6

Q ss_pred             EEecCCCeEEEEecCCcceeeeecCCCCCCCCCCccCCCCcceEEEEECCCCCEEEEecCCCcEEEEEcccc----eeee
Q 021247          119 VAGGGSASVKLWDTATWNLIATLSIPRPEGLKPTDKSSSKKFVLSVAWSPDGRRIACGSMDGTISVFDVTRA----KFLH  194 (315)
Q Consensus       119 ~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~s~dg~i~i~d~~~~----~~~~  194 (315)
                      ++.+.+.++.+-|+.++-..               ....+.-|.++.|...++.+..|..+|.|..+|++..    ....
T Consensus       228 fs~G~sqqv~L~nvetg~~q---------------sf~sksDVfAlQf~~s~nLv~~GcRngeI~~iDLR~rnqG~~~~a  292 (425)
T KOG2695|consen  228 FSVGLSQQVLLTNVETGHQQ---------------SFQSKSDVFALQFAGSDNLVFNGCRNGEIFVIDLRCRNQGNGWCA  292 (425)
T ss_pred             ecccccceeEEEEeeccccc---------------ccccchhHHHHHhcccCCeeEecccCCcEEEEEeeecccCCCcce
Confidence            45567788888888764221               1112233667788888899999999999999999865    2222


Q ss_pred             eecCCccceEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCee---EEEeecccccEEE--EEEcCCCCeEEEEeCCCcEEE
Q 021247          195 HLEGHFMPVRSLVYSPVDPRVLFSASDDTHVHMYDAEGKSL---VTAMSGHASWVLS--VDASPDGAAITTGSSDRTVKL  269 (315)
Q Consensus       195 ~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~---~~~~~~~~~~i~~--~~~~~~~~~l~s~~~d~~i~i  269 (315)
                      ..--|...|+++..-...++.|++.+.+|+|++||.+--+.   +.++.+|...-.-  +-..+....++++|.|...||
T Consensus       293 ~rlyh~Ssvtslq~Lq~s~q~LmaS~M~gkikLyD~R~~K~~~~V~qYeGHvN~~a~l~~~v~~eeg~I~s~GdDcytRi  372 (425)
T KOG2695|consen  293 QRLYHDSSVTSLQILQFSQQKLMASDMTGKIKLYDLRATKCKKSVMQYEGHVNLSAYLPAHVKEEEGSIFSVGDDCYTRI  372 (425)
T ss_pred             EEEEcCcchhhhhhhccccceEeeccCcCceeEeeehhhhcccceeeeecccccccccccccccccceEEEccCeeEEEE
Confidence            22337778888887766778999999999999999886555   7788888543322  335666778899999999999


Q ss_pred             EecCccceehccccc----ccceEEEEEee
Q 021247          270 WDLNMRAAMQSMTNH----TDQVWGVSFRP  295 (315)
Q Consensus       270 wd~~~~~~~~~~~~~----~~~v~~~~~s~  295 (315)
                      |.++.+..+.+++-.    +..+++++|.-
T Consensus       373 Wsl~~ghLl~tipf~~s~~e~d~~sv~~~s  402 (425)
T KOG2695|consen  373 WSLDSGHLLCTIPFPYSASEVDIPSVAFDS  402 (425)
T ss_pred             EecccCceeeccCCCCccccccccceehhc
Confidence            999999887776432    23566777753

>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=99.16  E-value=1.7e-09  Score=89.08  Aligned_cols=248  Identities=18%  Similarity=0.162  Sum_probs=167.7

Q ss_pred             hccccceEEEEEeecCCCCCcEEEEeeCCCcEEEEcCCC---CcceeeccccccceEEEEeCCCCCEEEEeeC-CCeEEE
Q 021247           11 NAHEESVWAVTWVPATETRPALLLTGSLDETVKLWRPDD---MQLERTNTGHCLGVVSVAAHPSGIIAASASL-DSFVRV   86 (315)
Q Consensus        11 ~~h~~~v~~v~~~~~~~~~~~~l~sgs~d~~v~~w~~~~---~~~~~~~~~h~~~v~~~~~~~~g~~l~s~~~-d~~i~~   86 (315)
                      ..|.+.|+.|.-.-+     .++.++|.||.++.|....   -+..+.+..|-..+.+++.+.+|.++.|++. |..+|+
T Consensus         6 ymhrd~i~hv~~tka-----~fiiqASlDGh~KFWkKs~isGvEfVKhFraHL~~I~sl~~S~dg~L~~Sv~d~Dhs~Kv   80 (558)
T KOG0882|consen    6 YMHRDVITHVFPTKA-----KFIIQASLDGHKKFWKKSRISGVEFVKHFRAHLGVILSLAVSYDGWLFRSVEDPDHSVKV   80 (558)
T ss_pred             hcccceeeeEeeehh-----heEEeeecchhhhhcCCCCccceeehhhhHHHHHHHHhhhccccceeEeeccCcccceeE
Confidence            469999999865432     2799999999999997643   2344556778889999999999999999777 999999


Q ss_pred             EECCCCceeEEeeC--CcccEEEEEECCCC--CeEEEEecCCCeEEEEecCCcceeeeecCCCCCCCCCCccCCCCcceE
Q 021247           87 FDVDTNASIATLEA--SPSEVWQMQFDPKG--TTLAVAGGGSASVKLWDTATWNLIATLSIPRPEGLKPTDKSSSKKFVL  162 (315)
Q Consensus        87 w~~~~~~~~~~~~~--~~~~v~~~~~~~~~--~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~  162 (315)
                      +|+++-..+.-++.  -++.+.. ..+|..  ..++++.-.++.+.++|-+...+.           ....+..|..+|.
T Consensus        81 fDvEn~DminmiKL~~lPg~a~w-v~skGd~~s~IAVs~~~sg~i~VvD~~~d~~q-----------~~~fkklH~sPV~  148 (558)
T KOG0882|consen   81 FDVENFDMINMIKLVDLPGFAEW-VTSKGDKISLIAVSLFKSGKIFVVDGFGDFCQ-----------DGYFKKLHFSPVK  148 (558)
T ss_pred             EEeeccchhhhcccccCCCceEE-ecCCCCeeeeEEeecccCCCcEEECCcCCcCc-----------cceecccccCceE
Confidence            99987655433322  2222221 122221  145555566788999997643211           1112334566799


Q ss_pred             EEEECCCCCEEEEecCCCcEEEEEccc------ceeeeee---------cCCccceEEEEEcCCCCcEEEEEeCCCeEEE
Q 021247          163 SVAWSPDGRRIACGSMDGTISVFDVTR------AKFLHHL---------EGHFMPVRSLVYSPVDPRVLFSASDDTHVHM  227 (315)
Q Consensus       163 ~~~~~~~~~~l~~~s~dg~i~i~d~~~------~~~~~~~---------~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~~  227 (315)
                      .+.++|-+..+++.-..|.|..|....      .+....+         ........++.|+| .+..+.+-+.|..|++
T Consensus       149 ~i~y~qa~Ds~vSiD~~gmVEyWs~e~~~qfPr~~l~~~~K~eTdLy~f~K~Kt~pts~Efsp-~g~qistl~~DrkVR~  227 (558)
T KOG0882|consen  149 KIRYNQAGDSAVSIDISGMVEYWSAEGPFQFPRTNLNFELKHETDLYGFPKAKTEPTSFEFSP-DGAQISTLNPDRKVRG  227 (558)
T ss_pred             EEEeeccccceeeccccceeEeecCCCcccCccccccccccccchhhcccccccCccceEEcc-ccCcccccCcccEEEE
Confidence            999999999999999999999998762      1111111         12334567899999 5567777779999999


Q ss_pred             EeCCCCeeEEEee--------------------------------cccc-cEEEEEEcCCCCeEEEEeCCCcEEEEecCc
Q 021247          228 YDAEGKSLVTAMS--------------------------------GHAS-WVLSVDASPDGAAITTGSSDRTVKLWDLNM  274 (315)
Q Consensus       228 wd~~~~~~~~~~~--------------------------------~~~~-~i~~~~~~~~~~~l~s~~~d~~i~iwd~~~  274 (315)
                      ++.+++.+++.+.                                .|.. .-+.+.|+..+.+|+-|+-=| |++.++.+
T Consensus       228 F~~KtGklvqeiDE~~t~~~~q~ks~y~l~~VelgRRmaverelek~~~~~~~~~~fdes~~flly~t~~g-ikvin~~t  306 (558)
T KOG0882|consen  228 FVFKTGKLVQEIDEVLTDAQYQPKSPYGLMHVELGRRMAVERELEKHGSTVGTNAVFDESGNFLLYGTILG-IKVINLDT  306 (558)
T ss_pred             EEeccchhhhhhhccchhhhhccccccccceeehhhhhhHHhhHhhhcCcccceeEEcCCCCEEEeeccee-EEEEEeec
Confidence            9988875543221                                1211 223566888888888777655 67777765


Q ss_pred             cce
Q 021247          275 RAA  277 (315)
Q Consensus       275 ~~~  277 (315)
                      ...
T Consensus       307 n~v  309 (558)
T KOG0882|consen  307 NTV  309 (558)
T ss_pred             CeE
Confidence            443

>KOG2041 consensus WD40 repeat protein [General function prediction only]

Probab=99.16  E-value=2.2e-09  Score=93.34  Aligned_cols=231  Identities=16%  Similarity=0.269  Sum_probs=160.6

Q ss_pred             ccceEEEEeCCCCCEEEEeeCCCeEEEEECCCCc---------------eeEEeeCCcccEEEEEECCCCCeEEEEecCC
Q 021247           60 CLGVVSVAAHPSGIIAASASLDSFVRVFDVDTNA---------------SIATLEASPSEVWQMQFDPKGTTLAVAGGGS  124 (315)
Q Consensus        60 ~~~v~~~~~~~~g~~l~s~~~d~~i~~w~~~~~~---------------~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d  124 (315)
                      .....++.|+....++++|+.||.+++..+.+..               .-+++++|...|..+.|+.+...+ .+...+
T Consensus        14 nvkL~c~~WNke~gyIAcgG~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeGH~~sV~vvTWNe~~QKL-TtSDt~   92 (1189)
T KOG2041|consen   14 NVKLHCAEWNKESGYIACGGADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEGHNASVMVVTWNENNQKL-TTSDTS   92 (1189)
T ss_pred             CceEEEEEEcccCCeEEeccccceeEEEEccccCCcccccccccccccchhhhhccCcceEEEEEeccccccc-cccCCC
Confidence            3457889999999999999999999999886532               124678899999999999876654 567788


Q ss_pred             CeEEEEecCCcceeeeecCCCCCCCCCCccCCCCcceEEEEECCCCCEEEEecCCCcEEEEEcccceeee-eecCCccce
Q 021247          125 ASVKLWDTATWNLIATLSIPRPEGLKPTDKSSSKKFVLSVAWSPDGRRIACGSMDGTISVFDVTRAKFLH-HLEGHFMPV  203 (315)
Q Consensus       125 ~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~s~dg~i~i~d~~~~~~~~-~~~~~~~~v  203 (315)
                      |-|.+|-+-.+........           ...+..|.+++|+.+|..++....||.|.+=.+..++... .+++.  -.
T Consensus        93 GlIiVWmlykgsW~EEMiN-----------nRnKSvV~SmsWn~dG~kIcIvYeDGavIVGsvdGNRIwgKeLkg~--~l  159 (1189)
T KOG2041|consen   93 GLIIVWMLYKGSWCEEMIN-----------NRNKSVVVSMSWNLDGTKICIVYEDGAVIVGSVDGNRIWGKELKGQ--LL  159 (1189)
T ss_pred             ceEEEEeeecccHHHHHhh-----------CcCccEEEEEEEcCCCcEEEEEEccCCEEEEeeccceecchhcchh--ec
Confidence            9999998866554433221           2235568999999999999999999999988887666543 23322  12


Q ss_pred             EEEEEcCCCCcEEEEEeCCCeEEEEeCCCCe-------e-EE---EeecccccEEEEEEc--------CCCCeEEEEeCC
Q 021247          204 RSLVYSPVDPRVLFSASDDTHVHMYDAEGKS-------L-VT---AMSGHASWVLSVDAS--------PDGAAITTGSSD  264 (315)
Q Consensus       204 ~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~-------~-~~---~~~~~~~~i~~~~~~--------~~~~~l~s~~~d  264 (315)
                      ..+.|++ +.+.++.+-..|.+++||.++.-       . +.   .+......|..+.|.        |+...|+.+-.+
T Consensus       160 ~hv~ws~-D~~~~Lf~~ange~hlydnqgnF~~Kl~~~c~Vn~tg~~s~~~~kia~i~w~~g~~~~v~pdrP~lavcy~n  238 (1189)
T KOG2041|consen  160 AHVLWSE-DLEQALFKKANGETHLYDNQGNFERKLEKDCEVNGTGIFSNFPTKIAEIEWNTGPYQPVPPDRPRLAVCYAN  238 (1189)
T ss_pred             cceeecc-cHHHHHhhhcCCcEEEecccccHHHhhhhceEEeeeeeecCCCccccceeeccCccccCCCCCCEEEEEEcC
Confidence            3677888 56677777788999999987531       1 11   111122335555553        466688888888


Q ss_pred             CcEEEEecCc-cceehcccccccceEEEEEeeCCCEEEEEeCCC
Q 021247          265 RTVKLWDLNM-RAAMQSMTNHTDQVWGVSFRPLGGRVVSVSDDK  307 (315)
Q Consensus       265 ~~i~iwd~~~-~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~  307 (315)
                      |.+.|-.-.. ..+.-.  .-.-.+..+.|+++|..|+.+|.|.
T Consensus       239 Gr~QiMR~eND~~Pvv~--dtgm~~vgakWnh~G~vLAvcG~~~  280 (1189)
T KOG2041|consen  239 GRMQIMRSENDPEPVVV--DTGMKIVGAKWNHNGAVLAVCGNDS  280 (1189)
T ss_pred             ceehhhhhcCCCCCeEE--ecccEeecceecCCCcEEEEccCcc
Confidence            8876653222 222211  1124677889999999999888753

>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal

Probab=99.14  E-value=5.5e-08  Score=76.03  Aligned_cols=154  Identities=19%  Similarity=0.293  Sum_probs=99.9

Q ss_pred             eEEEEECCCCCEEEEecCCCcEEEEEcccceeeeeecC-------CccceEEEEEcCCC-----CcEEEEEeCCCeEEEE
Q 021247          161 VLSVAWSPDGRRIACGSMDGTISVFDVTRAKFLHHLEG-------HFMPVRSLVYSPVD-----PRVLFSASDDTHVHMY  228 (315)
Q Consensus       161 i~~~~~~~~~~~l~~~s~dg~i~i~d~~~~~~~~~~~~-------~~~~v~~~~~~~~~-----~~~l~s~~~d~~i~~w  228 (315)
                      =+.++|+||+..||.+...|.|++||+...... .+..       -...|..+.|.+..     ...|+.-.-+|.++-|
T Consensus        46 WRkl~WSpD~tlLa~a~S~G~i~vfdl~g~~lf-~I~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~Sy  124 (282)
T PF15492_consen   46 WRKLAWSPDCTLLAYAESTGTIRVFDLMGSELF-VIPPAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRSY  124 (282)
T ss_pred             heEEEECCCCcEEEEEcCCCeEEEEecccceeE-EcCcccccCCccccceeeeEeeccccccccceeEEEEeccceeeeE
Confidence            467999999999999999999999999754332 2221       12456667675432     2345666666666655


Q ss_pred             eCC-----CCeeEEE--ee-cccccEEEEEEcCCCCeEEEEeCC-C----------cEEEEecCccce------------
Q 021247          229 DAE-----GKSLVTA--MS-GHASWVLSVDASPDGAAITTGSSD-R----------TVKLWDLNMRAA------------  277 (315)
Q Consensus       229 d~~-----~~~~~~~--~~-~~~~~i~~~~~~~~~~~l~s~~~d-~----------~i~iwd~~~~~~------------  277 (315)
                      -+.     +.+....  +. .+...|.++.++|..++|+.||.. .          =+..|.+-.+.+            
T Consensus       125 ~vs~gt~q~y~e~hsfsf~~~yp~Gi~~~vy~p~h~LLlVgG~~~~~~~~s~a~~~GLtaWRiL~~~Pyyk~v~~~~~~~  204 (282)
T PF15492_consen  125 LVSVGTNQGYQENHSFSFSSHYPHGINSAVYHPKHRLLLVGGCEQNQDGMSKASSCGLTAWRILSDSPYYKQVTSSEDDI  204 (282)
T ss_pred             EEEcccCCcceeeEEEEecccCCCceeEEEEcCCCCEEEEeccCCCCCccccccccCceEEEEcCCCCcEEEccccCccc
Confidence            532     1122222  12 236689999999998877766542 1          145665422111            


Q ss_pred             ---------ehcc--------cccccceEEEEEeeCCCEEEEEeCCCcEEEeecC
Q 021247          278 ---------MQSM--------TNHTDQVWGVSFRPLGGRVVSVSDDKSISLYEYS  315 (315)
Q Consensus       278 ---------~~~~--------~~~~~~v~~~~~s~~~~~l~s~~~d~~i~i~~~~  315 (315)
                               ++..        ....+.|..+.+||||..||+...+|+|.||++.
T Consensus       205 ~~~~~~~~~~~~~~~~~fs~~~~~~d~i~kmSlSPdg~~La~ih~sG~lsLW~iP  259 (282)
T PF15492_consen  205 TASSKRRGLLRIPSFKFFSRQGQEQDGIFKMSLSPDGSLLACIHFSGSLSLWEIP  259 (282)
T ss_pred             cccccccceeeccceeeeeccccCCCceEEEEECCCCCEEEEEEcCCeEEEEecC
Confidence                     0000        0123568899999999999999999999999873

>KOG4714 consensus Nucleoporin [Nuclear structure]

Probab=99.14  E-value=2.7e-09  Score=81.86  Aligned_cols=202  Identities=17%  Similarity=0.238  Sum_probs=113.8

Q ss_pred             eEEEEEeecCCCCCcEEEEeeCCCcEEEEcCCCCc------------ceeeccccccceEEEEeCCCCCEEEEeeCCCeE
Q 021247           17 VWAVTWVPATETRPALLLTGSLDETVKLWRPDDMQ------------LERTNTGHCLGVVSVAAHPSGIIAASASLDSFV   84 (315)
Q Consensus        17 v~~v~~~~~~~~~~~~l~sgs~d~~v~~w~~~~~~------------~~~~~~~h~~~v~~~~~~~~g~~l~s~~~d~~i   84 (315)
                      +..+.++...     .|+++..++.+.....-...            ..+.+..|..+-.+-+.+-.++.++++..||.+
T Consensus        39 ~~~~~~v~~~-----~lf~~e~~~~~ss~g~~r~~~~~~~~rt~~i~~~~~~a~~sep~p~~~~s~~~t~V~~~~~dg~~  113 (319)
T KOG4714|consen   39 LSKVSLSAEY-----ILFTGETSSQIISLGKGRGRCISLWERDDGIDPFKVLAKNSEIDPNDACTMTDNRVCIGYADGSL  113 (319)
T ss_pred             EEEeechhhh-----eeecccchhheeeeccceEEEechhhcccCcCceeeeeccCCCCCcccccccCCceEecCCCceE
Confidence            6666666533     47777777766655432111            112222333332223334456788999999999


Q ss_pred             EEEECCCCceeE-EeeCCcccEEEEEECCCCCeEEEEecCCCeEEEEecCCcceeeeecCCCCCCCCCCccCCCCcceEE
Q 021247           85 RVFDVDTNASIA-TLEASPSEVWQMQFDPKGTTLAVAGGGSASVKLWDTATWNLIATLSIPRPEGLKPTDKSSSKKFVLS  163 (315)
Q Consensus        85 ~~w~~~~~~~~~-~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~  163 (315)
                      -+.+.+....+. .+......--+.++...++.+ . .++-|.++..|-.-   ...+  .+...+.+.  ......+.+
T Consensus       114 ~v~s~~~~~~~~~~i~~~~~~~as~~~~~~~~~i-~-s~~~g~~n~~d~~~---a~~~--~p~~t~~~~--~~~~~~v~~  184 (319)
T KOG4714|consen  114 AVFSTDKDLALMSRIPSIHSGSASRKICRHGNSI-L-SGGCGNWNAQDNFY---ANTL--DPIKTLIPS--KKALDAVTA  184 (319)
T ss_pred             EEEechHHHhhhhhcccccccccccceeecccEE-e-cCCcceEeecccee---eecc--ccccccccc--ccccccchh
Confidence            999876522111 110000000111122233322 2 22333333322111   0000  011111111  111223888


Q ss_pred             EEECCC-CCEEEEecCCCcEEEEEcccceee-eeecCCccceEEEEEcCCCCcEEEEEeCCCeEEEEeCCC
Q 021247          164 VAWSPD-GRRIACGSMDGTISVFDVTRAKFL-HHLEGHFMPVRSLVYSPVDPRVLFSASDDTHVHMYDAEG  232 (315)
Q Consensus       164 ~~~~~~-~~~l~~~s~dg~i~i~d~~~~~~~-~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~  232 (315)
                      ++-+|. .+.+++|+.||.+-+||.+..... ..+..|+.+++.+-|+|.++..|++++.||.+..||..+
T Consensus       185 l~~hp~qq~~v~cgt~dg~~~l~d~rn~~~p~S~l~ahk~~i~eV~FHpk~p~~Lft~sedGslw~wdas~  255 (319)
T KOG4714|consen  185 LCSHPAQQHLVCCGTDDGIVGLWDARNVAMPVSLLKAHKAEIWEVHFHPKNPEHLFTCSEDGSLWHWDAST  255 (319)
T ss_pred             hhCCcccccEEEEecCCCeEEEEEcccccchHHHHHHhhhhhhheeccCCCchheeEecCCCcEEEEcCCC
Confidence            888885 556788999999999999876433 345789999999999999999999999999999999765

>PRK04043 tolB translocation protein TolB; Provisional

Probab=99.14  E-value=1.6e-07  Score=81.13  Aligned_cols=193  Identities=13%  Similarity=0.070  Sum_probs=117.6

Q ss_pred             ceEEEEeCCCCCE-EEEeeC---CCeEEEEECCCCceeEEeeCCcccEEEEEECCCCCeEEEEecC--CCeEEEEecCCc
Q 021247           62 GVVSVAAHPSGII-AASASL---DSFVRVFDVDTNASIATLEASPSEVWQMQFDPKGTTLAVAGGG--SASVKLWDTATW  135 (315)
Q Consensus        62 ~v~~~~~~~~g~~-l~s~~~---d~~i~~w~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~--d~~i~~~d~~~~  135 (315)
                      ....-.|+|+|+. ++-.+.   +..|+++|+.+++...... .++......|+|+|+.++++...  +..|.++|+.++
T Consensus       189 ~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~lt~-~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~dl~~g  267 (419)
T PRK04043        189 LNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKKEKIAS-SQGMLVVSDVSKDGSKLLLTMAPKGQPDIYLYDTNTK  267 (419)
T ss_pred             CeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCcEEEEec-CCCcEEeeEECCCCCEEEEEEccCCCcEEEEEECCCC
Confidence            6778899999984 553333   3569999998876544333 44556677899999988776544  357888888766


Q ss_pred             ceeeeecCCCCCCCCCCccCCCCcceEEEEECCCCCEEEEecC-CC--cEEEEEcccceeeeeecCCccceEEEEEcCCC
Q 021247          136 NLIATLSIPRPEGLKPTDKSSSKKFVLSVAWSPDGRRIACGSM-DG--TISVFDVTRAKFLHHLEGHFMPVRSLVYSPVD  212 (315)
Q Consensus       136 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~s~-dg--~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~  212 (315)
                      +.......+              .......|+|||+.|+-.+. .+  .|+++|+.+++.........   ....|+|++
T Consensus       268 ~~~~LT~~~--------------~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~~~rlt~~g~---~~~~~SPDG  330 (419)
T PRK04043        268 TLTQITNYP--------------GIDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSGSVEQVVFHGK---NNSSVSTYK  330 (419)
T ss_pred             cEEEcccCC--------------CccCccEECCCCCEEEEEECCCCCceEEEEECCCCCeEeCccCCC---cCceECCCC
Confidence            533211110              01224579999998765543 23  58888887766533222111   124899965


Q ss_pred             CcEEEEEeCC--------CeEEEEeCCCCeeEEEeecccccEEEEEEcCCCCeEEEEeCC-Cc--EEEEecCc
Q 021247          213 PRVLFSASDD--------THVHMYDAEGKSLVTAMSGHASWVLSVDASPDGAAITTGSSD-RT--VKLWDLNM  274 (315)
Q Consensus       213 ~~~l~s~~~d--------~~i~~wd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~d-~~--i~iwd~~~  274 (315)
                      ..++++....        ..|.+.|+.++... .+... .......|+|+|+.++-...+ +.  +.+.+++.
T Consensus       331 ~~Ia~~~~~~~~~~~~~~~~I~v~d~~~g~~~-~LT~~-~~~~~p~~SPDG~~I~f~~~~~~~~~L~~~~l~g  401 (419)
T PRK04043        331 NYIVYSSRETNNEFGKNTFNLYLISTNSDYIR-RLTAN-GVNQFPRFSSDGGSIMFIKYLGNQSALGIIRLNY  401 (419)
T ss_pred             CEEEEEEcCCCcccCCCCcEEEEEECCCCCeE-ECCCC-CCcCCeEECCCCCEEEEEEccCCcEEEEEEecCC
Confidence            5555555433        36888898877543 33322 122357899999976554433 33  44555543

>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=99.13  E-value=8.4e-09  Score=83.84  Aligned_cols=258  Identities=16%  Similarity=0.167  Sum_probs=147.1

Q ss_pred             EEEEcCCCCcceeeccccccceEEEEeCCCCC-EEEEeeCCCeEEEEECCCCceeEEeeCCcccEEEEEECCCCCeEEEE
Q 021247           42 VKLWRPDDMQLERTNTGHCLGVVSVAAHPSGI-IAASASLDSFVRVFDVDTNASIATLEASPSEVWQMQFDPKGTTLAVA  120 (315)
Q Consensus        42 v~~w~~~~~~~~~~~~~h~~~v~~~~~~~~g~-~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~  120 (315)
                      |++.+..+.+....+++|...|..++|+|... ++..++.+.+|++.|+++...+..+..+ ..+|+++|+-+...++++
T Consensus       175 v~~l~~~~fkssq~lp~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~vssy~a~-~~~wSC~wDlde~h~IYa  253 (463)
T KOG1645|consen  175 VQKLESHDFKSSQILPGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVVSSYIAY-NQIWSCCWDLDERHVIYA  253 (463)
T ss_pred             eEEeccCCcchhhcccccchhhhhhccCccccceeeeeccCceEEEEecccceeeeheecc-CCceeeeeccCCcceeEE
Confidence            56666555555556778889999999999887 7889999999999999999888888766 889999999988888899


Q ss_pred             ecCCCeEEEEecCCcceee-eecCCCCCCCCCCccCCCCcceEEEEE------CCCCCEEEEecCCCcEEEEEcc--cce
Q 021247          121 GGGSASVKLWDTATWNLIA-TLSIPRPEGLKPTDKSSSKKFVLSVAW------SPDGRRIACGSMDGTISVFDVT--RAK  191 (315)
Q Consensus       121 ~~~d~~i~~~d~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~i~~~~~------~~~~~~l~~~s~dg~i~i~d~~--~~~  191 (315)
                      |..+|.|.+||++.-+-.. .+.-           .....+|..++.      .+.|..|+..+.+  +..|...  .+.
T Consensus       254 Gl~nG~VlvyD~R~~~~~~~e~~a-----------~~t~~pv~~i~~~~~n~~f~~gglLv~~lt~--l~f~ei~~s~~~  320 (463)
T KOG1645|consen  254 GLQNGMVLVYDMRQPEGPLMELVA-----------NVTINPVHKIAPVQPNKIFTSGGLLVFALTV--LQFYEIVFSAEC  320 (463)
T ss_pred             eccCceEEEEEccCCCchHhhhhh-----------hhccCcceeecccCccccccccceEEeeehh--hhhhhhhccccC
Confidence            9999999999998632110 0000           000111222222      2234444444333  3334332  111


Q ss_pred             eeeeecC-CccceEEEEEcCCCCcEEEEEeCCC------eEEEE-eCCCCeeEE-Eeecc-cccE------EEEEEcCCC
Q 021247          192 FLHHLEG-HFMPVRSLVYSPVDPRVLFSASDDT------HVHMY-DAEGKSLVT-AMSGH-ASWV------LSVDASPDG  255 (315)
Q Consensus       192 ~~~~~~~-~~~~v~~~~~~~~~~~~l~s~~~d~------~i~~w-d~~~~~~~~-~~~~~-~~~i------~~~~~~~~~  255 (315)
                      ....+.. -.+...++..++....+|++.-.+.      .+..+ |...+..+. .-..+ .++-      ..+.-.++.
T Consensus       321 ~p~vlele~pG~cismqy~~~snh~l~tyRs~pn~p~~r~il~~~d~~dG~pVc~~r~~~~Gs~~~kl~t~~ai~~~~~n  400 (463)
T KOG1645|consen  321 LPCVLELEPPGICISMQYHGVSNHLLLTYRSNPNFPQSRFILGRIDFRDGFPVCGKRRTYFGSKQTKLSTTQAIRAVEDN  400 (463)
T ss_pred             CCcccccCCCcceeeeeecCccceEEEEecCCCCCccceeeeeeeccccCceeeeecccccCCcccccccccceeccccc
Confidence            1111111 1223444555543334444443321      11110 111111111 11111 0000      011112333


Q ss_pred             C-eEEEEeCCCcEEEEecCccceehcccccccceEEEEEe-eCCCEEEEEeCCCcEEEeec
Q 021247          256 A-AITTGSSDRTVKLWDLNMRAAMQSMTNHTDQVWGVSFR-PLGGRVVSVSDDKSISLYEY  314 (315)
Q Consensus       256 ~-~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s-~~~~~l~s~~~d~~i~i~~~  314 (315)
                      . ++..++..+.+.+||..+.+.+++++-. .+|..+... -+|+-++..=.|..++||..
T Consensus       401 n~iv~~gd~tn~lil~D~~s~evvQ~l~~~-epv~Dicp~~~n~~syLa~LTd~~v~Iyk~  460 (463)
T KOG1645|consen  401 NYIVVVGDSTNELILQDPHSFEVVQTLALS-EPVLDICPNDTNGSSYLALLTDDRVHIYKN  460 (463)
T ss_pred             cEEEEecCCcceeEEeccchhheeeecccC-cceeecceeecCCcchhhheecceEEEEec
Confidence            4 4456667778999999999999888654 677666433 34554555556677888875

>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation []

Probab=99.12  E-value=5e-07  Score=85.12  Aligned_cols=292  Identities=16%  Similarity=0.219  Sum_probs=174.9

Q ss_pred             cceEEEEEeecCCCCCcEEEEeeCCC--cEEEEcCCCCc---ceeecc-----ccccceEEEEeCCCCCEEEEeeCCCeE
Q 021247           15 ESVWAVTWVPATETRPALLLTGSLDE--TVKLWRPDDMQ---LERTNT-----GHCLGVVSVAAHPSGIIAASASLDSFV   84 (315)
Q Consensus        15 ~~v~~v~~~~~~~~~~~~l~sgs~d~--~v~~w~~~~~~---~~~~~~-----~h~~~v~~~~~~~~g~~l~s~~~d~~i   84 (315)
                      ..+...+|.+..+.  .++++++...  .|.+-......   ..-...     .....|.++.+-++...++.+..+|.|
T Consensus        22 ~~~~~~~~d~~sd~--i~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~~~~~~~~~~ivs~~yl~d~~~l~~~~~~Gdi   99 (928)
T PF04762_consen   22 LPITATAFDSDSDS--IYFVLGPNEIDYVIELDRFSQDGSVEVLASWDAPLPDDPNDKIVSFQYLADSESLCIALASGDI   99 (928)
T ss_pred             cccceEEEecCCCe--EEEEECCCCcceEEEEEeeccCCceeEEEeccccCCcCCCCcEEEEEeccCCCcEEEEECCceE
Confidence            45677777665432  2445544443  34443322211   111111     234679999999999999999999999


Q ss_pred             EEE----ECCCCceeEEeeCCcccEEEEEECCCCCeEEEEecCCCeEEEEecCCcceeeeecCCCCC-------------
Q 021247           85 RVF----DVDTNASIATLEASPSEVWQMQFDPKGTTLAVAGGGSASVKLWDTATWNLIATLSIPRPE-------------  147 (315)
Q Consensus        85 ~~w----~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~-------------  147 (315)
                      -+.    +.... .+.....-...|.+++|+|++..++++. +++++.+.. ++.+.+....+....             
T Consensus       100 ~~~~~~~~~~~~-~~E~VG~vd~GI~a~~WSPD~Ella~vT-~~~~l~~mt-~~fd~i~E~~l~~~~~~~~~~VsVGWGk  176 (928)
T PF04762_consen  100 ILVREDPDPDED-EIEIVGSVDSGILAASWSPDEELLALVT-GEGNLLLMT-RDFDPISEVPLDSDDFGESKHVSVGWGK  176 (928)
T ss_pred             EEEEccCCCCCc-eeEEEEEEcCcEEEEEECCCcCEEEEEe-CCCEEEEEe-ccceEEEEeecCccccCCCceeeeccCc
Confidence            998    44332 2333444456799999999998776654 456666653 344444433322110             


Q ss_pred             ---------CC-------CCCcc------CCCCcceEEEEECCCCCEEEEecC---C---CcEEEEEcccceeeeeecCC
Q 021247          148 ---------GL-------KPTDK------SSSKKFVLSVAWSPDGRRIACGSM---D---GTISVFDVTRAKFLHHLEGH  199 (315)
Q Consensus       148 ---------~~-------~~~~~------~~~~~~i~~~~~~~~~~~l~~~s~---d---g~i~i~d~~~~~~~~~~~~~  199 (315)
                               +.       .+...      ....+.-..++|-.||.+||+.+.   .   ..+++|+.+ |.....-..-
T Consensus       177 KeTQF~Gs~gK~aa~~~~~p~~~~~d~~~~s~dd~~~~ISWRGDG~yFAVss~~~~~~~~R~iRVy~Re-G~L~stSE~v  255 (928)
T PF04762_consen  177 KETQFHGSAGKAAARQLRDPTVPKVDEGKLSWDDGRVRISWRGDGEYFAVSSVEPETGSRRVIRVYSRE-GELQSTSEPV  255 (928)
T ss_pred             ccCccCcchhhhhhhhccCCCCCccccCccccCCCceEEEECCCCcEEEEEEEEcCCCceeEEEEECCC-ceEEeccccC
Confidence                     00       00000      002223468999999999998874   3   469999965 5443332222


Q ss_pred             ccceEEEEEcCCCCcEEEEEeC---CCeEEEEeCCCC---eeEEEeecccccEEEEEEcCCCCeEEEEeCCCcEEEEecC
Q 021247          200 FMPVRSLVYSPVDPRVLFSASD---DTHVHMYDAEGK---SLVTAMSGHASWVLSVDASPDGAAITTGSSDRTVKLWDLN  273 (315)
Q Consensus       200 ~~~v~~~~~~~~~~~~l~s~~~---d~~i~~wd~~~~---~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~d~~i~iwd~~  273 (315)
                      .+--..++|.| .+.++++...   ...|.+|+..+.   +...........|..+.|++++.+||.--.|. |.+|-..
T Consensus       256 ~gLe~~l~WrP-sG~lIA~~q~~~~~~~VvFfErNGLrhgeF~l~~~~~~~~v~~l~Wn~ds~iLAv~~~~~-vqLWt~~  333 (928)
T PF04762_consen  256 DGLEGALSWRP-SGNLIASSQRLPDRHDVVFFERNGLRHGEFTLRFDPEEEKVIELAWNSDSEILAVWLEDR-VQLWTRS  333 (928)
T ss_pred             CCccCCccCCC-CCCEEEEEEEcCCCcEEEEEecCCcEeeeEecCCCCCCceeeEEEECCCCCEEEEEecCC-ceEEEee
Confidence            22234678999 5677877764   456778875542   22222223456789999999999999877665 9999876


Q ss_pred             ccc--eehcccc-cccceEEEEEeeCC-CEEEEEeCCCcEEEeec
Q 021247          274 MRA--AMQSMTN-HTDQVWGVSFRPLG-GRVVSVSDDKSISLYEY  314 (315)
Q Consensus       274 ~~~--~~~~~~~-~~~~v~~~~~s~~~-~~l~s~~~d~~i~i~~~  314 (315)
                      ...  ..+.+.. ....+..+.|+|.. ..|......|.+..++|
T Consensus       334 NYHWYLKqei~~~~~~~~~~~~Wdpe~p~~L~v~t~~g~~~~~~~  378 (928)
T PF04762_consen  334 NYHWYLKQEIRFSSSESVNFVKWDPEKPLRLHVLTSNGQYEIYDF  378 (928)
T ss_pred             CCEEEEEEEEEccCCCCCCceEECCCCCCEEEEEecCCcEEEEEE
Confidence            533  2222221 12334458999864 35666666688877765

>KOG1912 consensus WD40 repeat protein [General function prediction only]

Probab=99.11  E-value=1.2e-08  Score=89.61  Aligned_cols=241  Identities=20%  Similarity=0.211  Sum_probs=165.1

Q ss_pred             ccceEEEEEeecCCCCCcEEEEeeCCCcEEEEcCCCCcceeeccccccceEEEEeCCC------------CCEEEEeeCC
Q 021247           14 EESVWAVTWVPATETRPALLLTGSLDETVKLWRPDDMQLERTNTGHCLGVVSVAAHPS------------GIIAASASLD   81 (315)
Q Consensus        14 ~~~v~~v~~~~~~~~~~~~l~sgs~d~~v~~w~~~~~~~~~~~~~h~~~v~~~~~~~~------------g~~l~s~~~d   81 (315)
                      ...-.++.|+|.+     +|+=|| ...|.+-|..+.+....+.-|...|+++.|.|-            ..+++++.-.
T Consensus        15 ~sN~~A~Dw~~~G-----LiAygs-hslV~VVDs~s~q~iqsie~h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~   88 (1062)
T KOG1912|consen   15 RSNRNAADWSPSG-----LIAYGS-HSLVSVVDSRSLQLIQSIELHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADIS   88 (1062)
T ss_pred             cccccccccCccc-----eEEEec-CceEEEEehhhhhhhhccccCccceeEEEeccCCCchhccCccccceeEEecccc
Confidence            3357788898865     455544 567888888888888888889999999998652            2367888889


Q ss_pred             CeEEEEECCCCceeEEeeCCcccEEEEEECC---CCCeEEEEecCCCeEEEEecCCcceeeeecCCCCCCCCCCccCCCC
Q 021247           82 SFVRVFDVDTNASIATLEASPSEVWQMQFDP---KGTTLAVAGGGSASVKLWDTATWNLIATLSIPRPEGLKPTDKSSSK  158 (315)
Q Consensus        82 ~~i~~w~~~~~~~~~~~~~~~~~v~~~~~~~---~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~  158 (315)
                      |.|.+||......+..+..+.+++..++|-|   +.+.++++-....++.+|+..+++...++....             
T Consensus        89 GrIil~d~~~~s~~~~l~~~~~~~qdl~W~~~rd~Srd~LlaIh~ss~lvLwntdtG~k~Wk~~ys~-------------  155 (1062)
T KOG1912|consen   89 GRIILVDFVLASVINWLSHSNDSVQDLCWVPARDDSRDVLLAIHGSSTLVLWNTDTGEKFWKYDYSH-------------  155 (1062)
T ss_pred             CcEEEEEehhhhhhhhhcCCCcchhheeeeeccCcchheeEEecCCcEEEEEEccCCceeeccccCC-------------
Confidence            9999999999988888888999999999865   334666777778899999999998887664321             


Q ss_pred             cceEEEEECC-CCCEEEEecCCCcEEEEEcc-------cceeeeeecCCcc-----------------c--------eEE
Q 021247          159 KFVLSVAWSP-DGRRIACGSMDGTISVFDVT-------RAKFLHHLEGHFM-----------------P--------VRS  205 (315)
Q Consensus       159 ~~i~~~~~~~-~~~~l~~~s~dg~i~i~d~~-------~~~~~~~~~~~~~-----------------~--------v~~  205 (315)
                      ....|+.+.| +.+.+..-+..|.+.+.+..       .++..+.-..|..                 +        ...
T Consensus       156 ~iLs~f~~DPfd~rh~~~l~s~g~vl~~~~l~~sep~~pgk~~qI~sd~Sdl~~lere~at~ns~ts~~~sa~fity~a~  235 (1062)
T KOG1912|consen  156 EILSCFRVDPFDSRHFCVLGSKGFVLSCKDLGLSEPDVPGKEFQITSDHSDLAHLERETATGNSTTSTPASAYFITYCAQ  235 (1062)
T ss_pred             cceeeeeeCCCCcceEEEEccCceEEEEeccCCCCCCCCceeEEEecCccchhhhhhhhhccccccCCCcchhHHHHHHh
Confidence            1245677777 66666666666777666542       1222222222211                 0        113


Q ss_pred             EEEcCCCCcEEEEEeCCCeEEEEeCCCCeeEEEeecccccEEEEEEcC--CCCeEEEEeCCCcEEEEecCc
Q 021247          206 LVYSPVDPRVLFSASDDTHVHMYDAEGKSLVTAMSGHASWVLSVDASP--DGAAITTGSSDRTVKLWDLNM  274 (315)
Q Consensus       206 ~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~i~~~~~~~--~~~~l~s~~~d~~i~iwd~~~  274 (315)
                      ++|+|.-.+.+ -..-.+.+.++|++-...+....-..+.+.-+.+-|  +...|.....||.+.+|-.+.
T Consensus       236 faf~p~~rn~l-fi~~prellv~dle~~~~l~vvpier~~akfv~vlP~~~rd~LfclH~nG~ltirvrk~  305 (1062)
T KOG1912|consen  236 FAFSPHWRNIL-FITFPRELLVFDLEYECCLAVVPIERGGAKFVDVLPDPRRDALFCLHSNGRLTIRVRKE  305 (1062)
T ss_pred             hhcChhhhceE-EEEeccceEEEcchhhceeEEEEeccCCcceeEeccCCCcceEEEEecCCeEEEEEeec
Confidence            46677544333 334456689999987777666544444333445555  456899999999999997653

>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]

Probab=99.10  E-value=6.2e-08  Score=74.90  Aligned_cols=221  Identities=10%  Similarity=0.014  Sum_probs=135.6

Q ss_pred             CCCEEEEeeCCCeEEEEECCCCcee-EEeeCCcccEEEEEECCCCCeEEEEecCCCeEEEEecCCcceeeeecCCCCCCC
Q 021247           71 SGIIAASASLDSFVRVFDVDTNASI-ATLEASPSEVWQMQFDPKGTTLAVAGGGSASVKLWDTATWNLIATLSIPRPEGL  149 (315)
Q Consensus        71 ~g~~l~s~~~d~~i~~w~~~~~~~~-~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~  149 (315)
                      ...+|+.|+..|...+|...+.+.. ...+.+...|.-+.-..+...-+..++.|.++++.++...........      
T Consensus        83 kc~~la~gG~~g~fd~~~~~tn~~h~~~cd~snn~v~~~~r~cd~~~~~~i~sndht~k~~~~~~~s~~~~~h~------  156 (344)
T KOG4532|consen   83 KCVTLADGGASGQFDLFACNTNDGHLYQCDVSNNDVTLVKRYCDLKFPLNIASNDHTGKTMVVSGDSNKFAVHN------  156 (344)
T ss_pred             cccEEEeccccceeeeecccCcccceeeecccccchhhhhhhcccccceeeccCCcceeEEEEecCcccceeec------
Confidence            4458899999999999999876542 233333332221111111111123356777777777653211111100      


Q ss_pred             CCCccCCCCcceEEEEECCCCCEEEEecCCCcEEEEEcccc-eeeee--ecCCccceEEEEEcCCCCcEEEEEeCCCeEE
Q 021247          150 KPTDKSSSKKFVLSVAWSPDGRRIACGSMDGTISVFDVTRA-KFLHH--LEGHFMPVRSLVYSPVDPRVLFSASDDTHVH  226 (315)
Q Consensus       150 ~~~~~~~~~~~i~~~~~~~~~~~l~~~s~dg~i~i~d~~~~-~~~~~--~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~  226 (315)
                            + .-...++.++++++++++.+....|..|.+... ..+..  ....+..-.+..|+. ....++++..||++.
T Consensus       157 ------~-~~~~ns~~~snd~~~~~~Vgds~~Vf~y~id~~sey~~~~~~a~t~D~gF~~S~s~-~~~~FAv~~Qdg~~~  228 (344)
T KOG4532|consen  157 ------Q-NLTQNSLHYSNDPSWGSSVGDSRRVFRYAIDDESEYIENIYEAPTSDHGFYNSFSE-NDLQFAVVFQDGTCA  228 (344)
T ss_pred             ------c-ccceeeeEEcCCCceEEEecCCCcceEEEeCCccceeeeeEecccCCCceeeeecc-CcceEEEEecCCcEE
Confidence                  0 011678999999999999999999999988533 22222  122233345667876 567899999999999


Q ss_pred             EEeCCCC-eeEE----EeecccccEEEEEEcCCCC--eEEEEeCCCcEEEEecCccceehccc-------ccc-cceEEE
Q 021247          227 MYDAEGK-SLVT----AMSGHASWVLSVDASPDGA--AITTGSSDRTVKLWDLNMRAAMQSMT-------NHT-DQVWGV  291 (315)
Q Consensus       227 ~wd~~~~-~~~~----~~~~~~~~i~~~~~~~~~~--~l~s~~~d~~i~iwd~~~~~~~~~~~-------~~~-~~v~~~  291 (315)
                      |||.+.. .++.    .-..|.+.+..+.|++.|.  +|.-.-.=+.+.+-|++..+..+.+.       .|. ..+...
T Consensus       229 I~DVR~~~tpm~~~sstrp~hnGa~R~c~Fsl~g~lDLLf~sEhfs~~hv~D~R~~~~~q~I~i~~d~~~~~~tq~ifgt  308 (344)
T KOG4532|consen  229 IYDVRNMATPMAEISSTRPHHNGAFRVCRFSLYGLLDLLFISEHFSRVHVVDTRNYVNHQVIVIPDDVERKHNTQHIFGT  308 (344)
T ss_pred             EEEecccccchhhhcccCCCCCCceEEEEecCCCcceEEEEecCcceEEEEEcccCceeeEEecCccccccccccccccc
Confidence            9998753 2222    2245899999999998654  44444445678999998866544321       222 337777


Q ss_pred             EEeeCCCEEEEEeC
Q 021247          292 SFRPLGGRVVSVSD  305 (315)
Q Consensus       292 ~~s~~~~~l~s~~~  305 (315)
                      .|+.++..+....+
T Consensus       309 ~f~~~n~s~~v~~e  322 (344)
T KOG4532|consen  309 NFNNENESNDVKNE  322 (344)
T ss_pred             cccCCCcccccccc
Confidence            77777666554444

>KOG3914 consensus WD repeat protein WDR4 [Function unknown]

Probab=99.07  E-value=3.2e-09  Score=86.11  Aligned_cols=149  Identities=23%  Similarity=0.253  Sum_probs=101.7

Q ss_pred             EEEECCCCCEEEEecCCCcEEEEEccccee----eeeecCCccceEEEEEcCCCCcEE--EEEeCCCeEEEEeCCCCeeE
Q 021247          163 SVAWSPDGRRIACGSMDGTISVFDVTRAKF----LHHLEGHFMPVRSLVYSPVDPRVL--FSASDDTHVHMYDAEGKSLV  236 (315)
Q Consensus       163 ~~~~~~~~~~l~~~s~dg~i~i~d~~~~~~----~~~~~~~~~~v~~~~~~~~~~~~l--~s~~~d~~i~~wd~~~~~~~  236 (315)
                      ....++.++++|++..+....+++......    +....... ..+++.|-..+...+  -.+++...+.+|....+ ..
T Consensus        67 ~~~~s~~~~llAv~~~~K~~~~f~~~~~~~~~kl~~~~~v~~-~~~ai~~~~~~~sv~v~dkagD~~~~di~s~~~~-~~  144 (390)
T KOG3914|consen   67 LVLTSDSGRLVAVATSSKQRAVFDYRENPKGAKLLDVSCVPK-RPTAISFIREDTSVLVADKAGDVYSFDILSADSG-RC  144 (390)
T ss_pred             ccccCCCceEEEEEeCCCceEEEEEecCCCcceeeeEeeccc-CcceeeeeeccceEEEEeecCCceeeeeeccccc-Cc
Confidence            345567788888888777777777654332    22111111 112333333222222  23345555666665543 22


Q ss_pred             EEeecccccEEEEEEcCCCCeEEEEeCCCcEEEEecCccceehcc-cccccceEEEEEeeCCCEEEEEeCCCcEEEeec
Q 021247          237 TAMSGHASWVLSVDASPDGAAITTGSSDRTVKLWDLNMRAAMQSM-TNHTDQVWGVSFRPLGGRVVSVSDDKSISLYEY  314 (315)
Q Consensus       237 ~~~~~~~~~i~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~-~~~~~~v~~~~~s~~~~~l~s~~~d~~i~i~~~  314 (315)
                      ..+.+|...+++++++||+++++++..|..||+-....-..++.+ -+|++-|..++.-++. .|+++|.|+++++|||
T Consensus       145 ~~~lGhvSml~dVavS~D~~~IitaDRDEkIRvs~ypa~f~IesfclGH~eFVS~isl~~~~-~LlS~sGD~tlr~Wd~  222 (390)
T KOG3914|consen  145 EPILGHVSMLLDVAVSPDDQFIITADRDEKIRVSRYPATFVIESFCLGHKEFVSTISLTDNY-LLLSGSGDKTLRLWDI  222 (390)
T ss_pred             chhhhhhhhhheeeecCCCCEEEEecCCceEEEEecCcccchhhhccccHhheeeeeeccCc-eeeecCCCCcEEEEec
Confidence            345689999999999999999999999999999888765555554 4699999999998864 5899999999999997

>KOG3914 consensus WD repeat protein WDR4 [Function unknown]

Probab=99.07  E-value=5e-09  Score=85.03  Aligned_cols=116  Identities=15%  Similarity=0.349  Sum_probs=82.8

Q ss_pred             EEEECCCCCEEEEe---cCCCcEEEEEcccceeeeeecCCccceEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCeeEE-E
Q 021247          163 SVAWSPDGRRIACG---SMDGTISVFDVTRAKFLHHLEGHFMPVRSLVYSPVDPRVLFSASDDTHVHMYDAEGKSLVT-A  238 (315)
Q Consensus       163 ~~~~~~~~~~l~~~---s~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~-~  238 (315)
                      .+.+-.+......+   +....+.+|....++ ...+.+|-.-+.+++++| ++++++++..|.+|++=....-..+. .
T Consensus       112 ai~~~~~~~sv~v~dkagD~~~~di~s~~~~~-~~~~lGhvSml~dVavS~-D~~~IitaDRDEkIRvs~ypa~f~Iesf  189 (390)
T KOG3914|consen  112 AISFIREDTSVLVADKAGDVYSFDILSADSGR-CEPILGHVSMLLDVAVSP-DDQFIITADRDEKIRVSRYPATFVIESF  189 (390)
T ss_pred             eeeeeeccceEEEEeecCCceeeeeecccccC-cchhhhhhhhhheeeecC-CCCEEEEecCCceEEEEecCcccchhhh
Confidence            34444444443333   334445555554433 334557888999999999 67899999999999986655433333 3


Q ss_pred             eecccccEEEEEEcCCCCeEEEEeCCCcEEEEecCccceehcc
Q 021247          239 MSGHASWVLSVDASPDGAAITTGSSDRTVKLWDLNMRAAMQSM  281 (315)
Q Consensus       239 ~~~~~~~i~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~  281 (315)
                      .-||...|..+++-++ +.|++||.|+++++||+.+++.++++
T Consensus       190 clGH~eFVS~isl~~~-~~LlS~sGD~tlr~Wd~~sgk~L~t~  231 (390)
T KOG3914|consen  190 CLGHKEFVSTISLTDN-YLLLSGSGDKTLRLWDITSGKLLDTC  231 (390)
T ss_pred             ccccHhheeeeeeccC-ceeeecCCCCcEEEEecccCCccccc
Confidence            4689999999998865 45899999999999999999887664

>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal

Probab=99.05  E-value=1.5e-06  Score=68.22  Aligned_cols=200  Identities=13%  Similarity=0.129  Sum_probs=105.5

Q ss_pred             ceEEEEeCCCCCEEEEeeCCCeEEEEECCCCceeEEeeC------CcccEEEEEECCCC-----CeEEEEecCCCeEEEE
Q 021247           62 GVVSVAAHPSGIIAASASLDSFVRVFDVDTNASIATLEA------SPSEVWQMQFDPKG-----TTLAVAGGGSASVKLW  130 (315)
Q Consensus        62 ~v~~~~~~~~g~~l~s~~~d~~i~~w~~~~~~~~~~~~~------~~~~v~~~~~~~~~-----~~~~~~~~~d~~i~~~  130 (315)
                      .-+.++|+||+.+||.+...|+|+++|+........-..      -..+|-.+.|-+..     .+.++.-...|.++=|
T Consensus        45 QWRkl~WSpD~tlLa~a~S~G~i~vfdl~g~~lf~I~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~Sy  124 (282)
T PF15492_consen   45 QWRKLAWSPDCTLLAYAESTGTIRVFDLMGSELFVIPPAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRSY  124 (282)
T ss_pred             hheEEEECCCCcEEEEEcCCCeEEEEecccceeEEcCcccccCCccccceeeeEeeccccccccceeEEEEeccceeeeE
Confidence            457899999999999999999999999986543321111      12345566554322     1122233445555555


Q ss_pred             ecCC-----cceeeeecCCCCCCCCCCccCCCCcceEEEEECCCCCEEEEecCCCcEEEEEcccceeeeeecCCccceEE
Q 021247          131 DTAT-----WNLIATLSIPRPEGLKPTDKSSSKKFVLSVAWSPDGRRIACGSMDGTISVFDVTRAKFLHHLEGHFMPVRS  205 (315)
Q Consensus       131 d~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~s~dg~i~i~d~~~~~~~~~~~~~~~~v~~  205 (315)
                      -+..     .+....+.+.          ......|.++.++|..+.|++|+....      ..+.    -+.....+++
T Consensus       125 ~vs~gt~q~y~e~hsfsf~----------~~yp~Gi~~~vy~p~h~LLlVgG~~~~------~~~~----s~a~~~GLta  184 (282)
T PF15492_consen  125 LVSVGTNQGYQENHSFSFS----------SHYPHGINSAVYHPKHRLLLVGGCEQN------QDGM----SKASSCGLTA  184 (282)
T ss_pred             EEEcccCCcceeeEEEEec----------ccCCCceeEEEEcCCCCEEEEeccCCC------CCcc----ccccccCceE
Confidence            4321     1122222111          112335899999999888877653221      0000    0000111111


Q ss_pred             EEEcCCCCcEE-EEEeCCCe------EEEEeCCCCeeEEEeecccccEEEEEEcCCCCeEEEEeCCCcEEEEecCcccee
Q 021247          206 LVYSPVDPRVL-FSASDDTH------VHMYDAEGKSLVTAMSGHASWVLSVDASPDGAAITTGSSDRTVKLWDLNMRAAM  278 (315)
Q Consensus       206 ~~~~~~~~~~l-~s~~~d~~------i~~wd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~  278 (315)
                      -..-...+.+. ++...|..      ..+|.+-+.............|..+.+||+|+.||+...+|.|.+|++.+-+..
T Consensus       185 WRiL~~~Pyyk~v~~~~~~~~~~~~~~~~~~~~~~~~fs~~~~~~d~i~kmSlSPdg~~La~ih~sG~lsLW~iPsL~~~  264 (282)
T PF15492_consen  185 WRILSDSPYYKQVTSSEDDITASSKRRGLLRIPSFKFFSRQGQEQDGIFKMSLSPDGSLLACIHFSGSLSLWEIPSLRLQ  264 (282)
T ss_pred             EEEcCCCCcEEEccccCccccccccccceeeccceeeeeccccCCCceEEEEECCCCCEEEEEEcCCeEEEEecCcchhh
Confidence            11111112111 11111211      112222221111111234677999999999999999999999999999875544


Q ss_pred             hcc
Q 021247          279 QSM  281 (315)
Q Consensus       279 ~~~  281 (315)
                      ...
T Consensus       265 ~~W  267 (282)
T PF15492_consen  265 RSW  267 (282)
T ss_pred             ccc
Confidence            433

>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]

Probab=99.04  E-value=1.2e-08  Score=80.42  Aligned_cols=247  Identities=15%  Similarity=0.268  Sum_probs=153.1

Q ss_pred             cccceEEEEEeecCCCCCcEEEEeeCCCcEEEEcCCCC-----cceeecccccc------------ceEEEEeCCCC--C
Q 021247           13 HEESVWAVTWVPATETRPALLLTGSLDETVKLWRPDDM-----QLERTNTGHCL------------GVVSVAAHPSG--I   73 (315)
Q Consensus        13 h~~~v~~v~~~~~~~~~~~~l~sgs~d~~v~~w~~~~~-----~~~~~~~~h~~------------~v~~~~~~~~g--~   73 (315)
                      ..+.|++|.|-..+.    ++++|...|.|.+|.-...     +....+.+|..            .|..+.|..++  .
T Consensus        25 ead~ItaVefd~tg~----YlatGDkgGRVvlfer~~s~~ceykf~teFQshe~EFDYLkSleieEKin~I~w~~~t~r~  100 (460)
T COG5170          25 EADKITAVEFDETGL----YLATGDKGGRVVLFEREKSYGCEYKFFTEFQSHELEFDYLKSLEIEEKINAIEWFDDTGRN  100 (460)
T ss_pred             ccceeeEEEeccccc----eEeecCCCceEEEeecccccccchhhhhhhcccccchhhhhhccHHHHhhheeeecCCCcc
Confidence            346899999977654    7999999999999964432     22223445542            45666665433  3


Q ss_pred             EEEEeeCCCeEEEEECCCCc-------------------ee------------------E-----Ee-eCCcccEEEEEE
Q 021247           74 IAASASLDSFVRVFDVDTNA-------------------SI------------------A-----TL-EASPSEVWQMQF  110 (315)
Q Consensus        74 ~l~s~~~d~~i~~w~~~~~~-------------------~~------------------~-----~~-~~~~~~v~~~~~  110 (315)
                      .++..+.|++|++|.+....                   .+                  .     .+ ..|+..+.++++
T Consensus       101 hFLlstNdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~p~rvyaNaH~yhiNSiS~  180 (460)
T COG5170         101 HFLLSTNDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAKPCRVYANAHPYHINSISF  180 (460)
T ss_pred             eEEEecCCceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccccccceEEEeccceeccccceeEeeeeee
Confidence            55567789999999875320                   00                  0     00 234556788888


Q ss_pred             CCCCCeEEEEecCCCeEEEEecCCcceeeeecCCCCCCCCCCccCCCCcceEEEEECCC-CCEEEEecCCCcEEEEEccc
Q 021247          111 DPKGTTLAVAGGGSASVKLWDTATWNLIATLSIPRPEGLKPTDKSSSKKFVLSVAWSPD-GRRIACGSMDGTISVFDVTR  189 (315)
Q Consensus       111 ~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-~~~l~~~s~dg~i~i~d~~~  189 (315)
                      +.+...+ + ..+|-.|.+|++.--.....+.     ..+|.....-...|++..|+|. .+.+.-.+..|.|++-|+++
T Consensus       181 NsD~et~-l-SaDdLrINLWnl~i~D~sFnIV-----DiKP~nmeeLteVItSaeFhp~~cn~fmYSsSkG~Ikl~DlRq  253 (460)
T COG5170         181 NSDKETL-L-SADDLRINLWNLEIIDGSFNIV-----DIKPHNMEELTEVITSAEFHPEMCNVFMYSSSKGEIKLNDLRQ  253 (460)
T ss_pred             cCchhee-e-eccceeeeeccccccCCceEEE-----eccCccHHHHHHHHhhcccCHhHcceEEEecCCCcEEehhhhh
Confidence            8776644 3 3578899999876322111110     1111111111234788899996 45677788899999999985


Q ss_pred             ceeee----------------eecCCccceEEEEEcCCCCcEEEEEeCCCeEEEEeCCCC-eeEEEeecc----------
Q 021247          190 AKFLH----------------HLEGHFMPVRSLVYSPVDPRVLFSASDDTHVHMYDAEGK-SLVTAMSGH----------  242 (315)
Q Consensus       190 ~~~~~----------------~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~-~~~~~~~~~----------  242 (315)
                      .....                .+..-...|..+.|++ +++++++- +-.++++||.+.. .++.++.-|          
T Consensus       254 ~alcdn~~klfe~~~D~v~~~ff~eivsSISD~kFs~-ngryIlsR-dyltvkiwDvnm~k~pikTi~~h~~l~~~l~d~  331 (460)
T COG5170         254 SALCDNSKKLFELTIDGVDVDFFEEIVSSISDFKFSD-NGRYILSR-DYLTVKIWDVNMAKNPIKTIPMHCDLMDELNDV  331 (460)
T ss_pred             hhhccCchhhhhhccCcccchhHHHHhhhhcceEEcC-CCcEEEEe-ccceEEEEecccccCCceeechHHHHHHHHHhh
Confidence            43210                0112234678899997 56666553 3468999998643 344443322          


Q ss_pred             --cccE---EEEEEcCCCCeEEEEeCCCcEEEEec
Q 021247          243 --ASWV---LSVDASPDGAAITTGSSDRTVKLWDL  272 (315)
Q Consensus       243 --~~~i---~~~~~~~~~~~l~s~~~d~~i~iwd~  272 (315)
                        +..|   ..+.|+.+...+++|+..+..-++-.
T Consensus       332 YEnDaifdkFeisfSgd~~~v~sgsy~NNfgiyp~  366 (460)
T COG5170         332 YENDAIFDKFEISFSGDDKHVLSGSYSNNFGIYPT  366 (460)
T ss_pred             hhccceeeeEEEEecCCcccccccccccceeeecc
Confidence              2333   35778888889999998887777753

>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species

Probab=99.03  E-value=4.9e-06  Score=67.09  Aligned_cols=214  Identities=20%  Similarity=0.273  Sum_probs=132.5

Q ss_pred             EEEEeecCCCCCcEEEEeeCCCcEEEEcCCCCcceeeccccccceEEEEeC-CCCCEEEEeeCCCeEEEEECCCCceeEE
Q 021247           19 AVTWVPATETRPALLLTGSLDETVKLWRPDDMQLERTNTGHCLGVVSVAAH-PSGIIAASASLDSFVRVFDVDTNASIAT   97 (315)
Q Consensus        19 ~v~~~~~~~~~~~~l~sgs~d~~v~~w~~~~~~~~~~~~~h~~~v~~~~~~-~~g~~l~s~~~d~~i~~w~~~~~~~~~~   97 (315)
                      ++.|.+...   .++++--..+.|..|++.+.........   ....+.+. ++|.++++. .++ +.++|..+++....
T Consensus         4 gp~~d~~~g---~l~~~D~~~~~i~~~~~~~~~~~~~~~~---~~~G~~~~~~~g~l~v~~-~~~-~~~~d~~~g~~~~~   75 (246)
T PF08450_consen    4 GPVWDPRDG---RLYWVDIPGGRIYRVDPDTGEVEVIDLP---GPNGMAFDRPDGRLYVAD-SGG-IAVVDPDTGKVTVL   75 (246)
T ss_dssp             EEEEETTTT---EEEEEETTTTEEEEEETTTTEEEEEESS---SEEEEEEECTTSEEEEEE-TTC-EEEEETTTTEEEEE
T ss_pred             ceEEECCCC---EEEEEEcCCCEEEEEECCCCeEEEEecC---CCceEEEEccCCEEEEEE-cCc-eEEEecCCCcEEEE
Confidence            466776432   3667766789999999887655332111   25666676 676666554 444 56669888755433


Q ss_pred             eeC-----CcccEEEEEECCCCCeEEEEecCC--------CeEEEEecCCcceeeeecCCCCCCCCCCccCCCCcceEEE
Q 021247           98 LEA-----SPSEVWQMQFDPKGTTLAVAGGGS--------ASVKLWDTATWNLIATLSIPRPEGLKPTDKSSSKKFVLSV  164 (315)
Q Consensus        98 ~~~-----~~~~v~~~~~~~~~~~~~~~~~~d--------~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~  164 (315)
                      ...     .....+.++++|+|+ +.++....        +.+..++.. ++......              .-...+.+
T Consensus        76 ~~~~~~~~~~~~~ND~~vd~~G~-ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~~~~~--------------~~~~pNGi  139 (246)
T PF08450_consen   76 ADLPDGGVPFNRPNDVAVDPDGN-LYVTDSGGGGASGIDPGSVYRIDPD-GKVTVVAD--------------GLGFPNGI  139 (246)
T ss_dssp             EEEETTCSCTEEEEEEEE-TTS--EEEEEECCBCTTCGGSEEEEEEETT-SEEEEEEE--------------EESSEEEE
T ss_pred             eeccCCCcccCCCceEEEcCCCC-EEEEecCCCccccccccceEEECCC-CeEEEEec--------------Ccccccce
Confidence            332     335678999999998 44443322        446666665 23221111              11225799


Q ss_pred             EECCCCCEEE-EecCCCcEEEEEcccce-------eeeeecCCccceEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCeeE
Q 021247          165 AWSPDGRRIA-CGSMDGTISVFDVTRAK-------FLHHLEGHFMPVRSLVYSPVDPRVLFSASDDTHVHMYDAEGKSLV  236 (315)
Q Consensus       165 ~~~~~~~~l~-~~s~dg~i~i~d~~~~~-------~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~  236 (315)
                      +|+|+++.|+ +-+..+.|..+++....       ....+.........+++.. ++++.++....+.|.+++.+ ++++
T Consensus       140 ~~s~dg~~lyv~ds~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~-~G~l~va~~~~~~I~~~~p~-G~~~  217 (246)
T PF08450_consen  140 AFSPDGKTLYVADSFNGRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDS-DGNLWVADWGGGRIVVFDPD-GKLL  217 (246)
T ss_dssp             EEETTSSEEEEEETTTTEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBT-TS-EEEEEETTTEEEEEETT-SCEE
T ss_pred             EECCcchheeecccccceeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcC-CCCEEEEEcCCCEEEEECCC-ccEE
Confidence            9999998775 66788899999985221       1222222223467888887 67788888889999999998 6666


Q ss_pred             EEeecccccEEEEEEc-CCCCeE
Q 021247          237 TAMSGHASWVLSVDAS-PDGAAI  258 (315)
Q Consensus       237 ~~~~~~~~~i~~~~~~-~~~~~l  258 (315)
                      ..+.-....+++++|. ++...|
T Consensus       218 ~~i~~p~~~~t~~~fgg~~~~~L  240 (246)
T PF08450_consen  218 REIELPVPRPTNCAFGGPDGKTL  240 (246)
T ss_dssp             EEEE-SSSSEEEEEEESTTSSEE
T ss_pred             EEEcCCCCCEEEEEEECCCCCEE
Confidence            6665444578999994 554444

These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....

>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A

Probab=99.02  E-value=5e-07  Score=72.42  Aligned_cols=219  Identities=21%  Similarity=0.193  Sum_probs=131.7

Q ss_pred             CCcEEEEcCCCCcceeeccc-c-ccceEEEEeCCCCCEEEEeeCCCeEEEEECCCCceeEEeeCCcccEEEEEECCCCCe
Q 021247           39 DETVKLWRPDDMQLERTNTG-H-CLGVVSVAAHPSGIIAASASLDSFVRVFDVDTNASIATLEASPSEVWQMQFDPKGTT  116 (315)
Q Consensus        39 d~~v~~w~~~~~~~~~~~~~-h-~~~v~~~~~~~~g~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~v~~~~~~~~~~~  116 (315)
                      +|+|..||..+++......- . ....... ..+++..+++++.++.+..||..+++.+....... ++...-. ..+..
T Consensus         2 ~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~-~~~~~~~v~~~~~~~~l~~~d~~tG~~~W~~~~~~-~~~~~~~-~~~~~   78 (238)
T PF13360_consen    2 DGTLSALDPRTGKELWSYDLGPGIGGPVAT-AVPDGGRVYVASGDGNLYALDAKTGKVLWRFDLPG-PISGAPV-VDGGR   78 (238)
T ss_dssp             TSEEEEEETTTTEEEEEEECSSSCSSEEET-EEEETTEEEEEETTSEEEEEETTTSEEEEEEECSS-CGGSGEE-EETTE
T ss_pred             CCEEEEEECCCCCEEEEEECCCCCCCccce-EEEeCCEEEEEcCCCEEEEEECCCCCEEEEeeccc-cccceee-ecccc
Confidence            67888899888777655432 1 1111211 22345566667899999999999999887766422 1111011 12333


Q ss_pred             EEEEecCCCeEEEEecCCcceeeee-cCCCCCCCCCCccCCCCcceEEEEECCCCCEEEEecCCCcEEEEEcccceeeee
Q 021247          117 LAVAGGGSASVKLWDTATWNLIATL-SIPRPEGLKPTDKSSSKKFVLSVAWSPDGRRIACGSMDGTISVFDVTRAKFLHH  195 (315)
Q Consensus       117 ~~~~~~~d~~i~~~d~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~s~dg~i~i~d~~~~~~~~~  195 (315)
                      +++ +..++.+..+|..+++.+... ....+. ..         ....+.....++.++++..++.+..+|+.+++.+-.
T Consensus        79 v~v-~~~~~~l~~~d~~tG~~~W~~~~~~~~~-~~---------~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tG~~~w~  147 (238)
T PF13360_consen   79 VYV-GTSDGSLYALDAKTGKVLWSIYLTSSPP-AG---------VRSSSSPAVDGDRLYVGTSSGKLVALDPKTGKLLWK  147 (238)
T ss_dssp             EEE-EETTSEEEEEETTTSCEEEEEEE-SSCT-CS---------TB--SEEEEETTEEEEEETCSEEEEEETTTTEEEEE
T ss_pred             ccc-ccceeeeEecccCCcceeeeeccccccc-cc---------cccccCceEecCEEEEEeccCcEEEEecCCCcEEEE
Confidence            443 346779999999999998874 322111 00         011111222377888888899999999999998766


Q ss_pred             ecCCccc----------e-EEEEEcCCCCcEEEEEeCCCe-EEEEeCCCCeeEEEeecccccEEEEEEcCCCCeEEEEeC
Q 021247          196 LEGHFMP----------V-RSLVYSPVDPRVLFSASDDTH-VHMYDAEGKSLVTAMSGHASWVLSVDASPDGAAITTGSS  263 (315)
Q Consensus       196 ~~~~~~~----------v-~~~~~~~~~~~~l~s~~~d~~-i~~wd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~  263 (315)
                      .......          + ..+.+.  ++ .++.+..++. +.+ |.++++.+-...  ...+..+ ..+.+..|+.++.
T Consensus       148 ~~~~~~~~~~~~~~~~~~~~~~~~~--~~-~v~~~~~~g~~~~~-d~~tg~~~w~~~--~~~~~~~-~~~~~~~l~~~~~  220 (238)
T PF13360_consen  148 YPVGEPRGSSPISSFSDINGSPVIS--DG-RVYVSSGDGRVVAV-DLATGEKLWSKP--ISGIYSL-PSVDGGTLYVTSS  220 (238)
T ss_dssp             EESSTT-SS--EEEETTEEEEEECC--TT-EEEEECCTSSEEEE-ETTTTEEEEEEC--SS-ECEC-EECCCTEEEEEET
T ss_pred             eecCCCCCCcceeeecccccceEEE--CC-EEEEEcCCCeEEEE-ECCCCCEEEEec--CCCccCC-ceeeCCEEEEEeC
Confidence            6543322          1 122222  34 5556666664 555 999887552222  2223221 3456777887889


Q ss_pred             CCcEEEEecCcccee
Q 021247          264 DRTVKLWDLNMRAAM  278 (315)
Q Consensus       264 d~~i~iwd~~~~~~~  278 (315)
                      ++.|..||+++++..
T Consensus       221 ~~~l~~~d~~tG~~~  235 (238)
T PF13360_consen  221 DGRLYALDLKTGKVV  235 (238)
T ss_dssp             TTEEEEEETTTTEEE
T ss_pred             CCEEEEEECCCCCEE
Confidence            999999999998753

...

>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=98.99  E-value=2.3e-09  Score=93.41  Aligned_cols=199  Identities=20%  Similarity=0.326  Sum_probs=133.0

Q ss_pred             ccEEEEEECCCCCeEEEEecCCCeEEEEecCC-cceeeeecCCCCCCCCCCccCCCCcceEEEEECCCC--CEEEEecCC
Q 021247          103 SEVWQMQFDPKGTTLAVAGGGSASVKLWDTAT-WNLIATLSIPRPEGLKPTDKSSSKKFVLSVAWSPDG--RRIACGSMD  179 (315)
Q Consensus       103 ~~v~~~~~~~~~~~~~~~~~~d~~i~~~d~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~--~~l~~~s~d  179 (315)
                      ..+..+..+|.|..++.+. . .-+.+.|+.. ++...-+            .....-.+-...|+|..  .+-++....
T Consensus        25 ~~~~a~si~p~grdi~lAs-r-~gl~i~dld~p~~ppr~l------------~h~tpw~vad~qws~h~a~~~wiVsts~   90 (1081)
T KOG0309|consen   25 GGFNAVSINPSGRDIVLAS-R-QGLYIIDLDDPFTPPRWL------------HHITPWQVADVQWSPHPAKPYWIVSTSN   90 (1081)
T ss_pred             Ccccceeeccccchhhhhh-h-cCeEEEeccCCCCCceee------------eccCcchhcceecccCCCCceeEEecCc
Confidence            3466778889888775542 2 2345555542 1110000            00001124456777643  244444455


Q ss_pred             CcEEEEEcc--cc-eeeeeecCCccceEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCe-eEEEeecccccEEEEEEcCCC
Q 021247          180 GTISVFDVT--RA-KFLHHLEGHFMPVRSLVYSPVDPRVLFSASDDTHVHMYDAEGKS-LVTAMSGHASWVLSVDASPDG  255 (315)
Q Consensus       180 g~i~i~d~~--~~-~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~-~~~~~~~~~~~i~~~~~~~~~  255 (315)
                      ..-.+|++.  .. .....+.+|...|+.+.|+|..+..+++++.|..++.||++... .+.....-......+.|+...
T Consensus        91 qkaiiwnlA~ss~~aIef~lhghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~~p~ys~~~w~s~asqVkwnyk~  170 (1081)
T KOG0309|consen   91 QKAIIWNLAKSSSNAIEFVLHGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSPHRPFYSTSSWRSAASQVKWNYKD  170 (1081)
T ss_pred             chhhhhhhhcCCccceEEEEecCccceeccccCCCCCcceeeccccccceeeeccCCCcceeeeecccccCceeeecccC
Confidence            667788874  22 23344668999999999999999999999999999999998643 233322223335578888755


Q ss_pred             CeEEEEeCCCcEEEEecCcc-ceehcccccccceEEEEEeeC-CCEEEEEeCCCcEEEeecC
Q 021247          256 AAITTGSSDRTVKLWDLNMR-AAMQSMTNHTDQVWGVSFRPL-GGRVVSVSDDKSISLYEYS  315 (315)
Q Consensus       256 ~~l~s~~~d~~i~iwd~~~~-~~~~~~~~~~~~v~~~~~s~~-~~~l~s~~~d~~i~i~~~~  315 (315)
                      ..+.+.+..+.|++||++.+ .++..+.+|...|.++.|... -..+.+.+.|++|+.|+++
T Consensus       171 p~vlasshg~~i~vwd~r~gs~pl~s~K~~vs~vn~~~fnr~~~s~~~s~~~d~tvkfw~y~  232 (1081)
T KOG0309|consen  171 PNVLASSHGNDIFVWDLRKGSTPLCSLKGHVSSVNSIDFNRFKYSEIMSSSNDGTVKFWDYS  232 (1081)
T ss_pred             cchhhhccCCceEEEeccCCCcceEEecccceeeehHHHhhhhhhhhcccCCCCceeeeccc
Confidence            55555677778999999876 567788888888999988764 3468899999999999985

>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide

Probab=98.98  E-value=1.5e-09  Score=60.26  Aligned_cols=39  Identities=18%  Similarity=0.425  Sum_probs=36.3

Q ss_pred             cceehcccccccceEEEEEeeCCCEEEEEeCCCcEEEee
Q 021247          275 RAAMQSMTNHTDQVWGVSFRPLGGRVVSVSDDKSISLYE  313 (315)
Q Consensus       275 ~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~i~i~~  313 (315)
                      ++++.++.+|.+.|++++|+|++.+|++++.|++|+|||
T Consensus         1 g~~~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd   39 (39)
T PF00400_consen    1 GKCVRTFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD   39 (39)
T ss_dssp             EEEEEEEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred             CeEEEEEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence            356778899999999999999999999999999999997

WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....

>PRK11138 outer membrane biogenesis protein BamB; Provisional

Probab=98.96  E-value=4.7e-06  Score=72.10  Aligned_cols=265  Identities=12%  Similarity=0.108  Sum_probs=153.9

Q ss_pred             EEEEeeCCCcEEEEcCCCCcceeeccccccceEEEEeCCCCCEEEEeeCCCeEEEEECCCCceeEEeeCCcccEE-EEEE
Q 021247           32 LLLTGSLDETVKLWRPDDMQLERTNTGHCLGVVSVAAHPSGIIAASASLDSFVRVFDVDTNASIATLEASPSEVW-QMQF  110 (315)
Q Consensus        32 ~l~sgs~d~~v~~w~~~~~~~~~~~~~h~~~v~~~~~~~~g~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~v~-~~~~  110 (315)
                      .++.++.+|.+.-+|.++++......... .+.+-..- .+..++.+..++.+..+|.++++.+........... ...-
T Consensus       122 ~v~v~~~~g~l~ald~~tG~~~W~~~~~~-~~~ssP~v-~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~  199 (394)
T PRK11138        122 KVYIGSEKGQVYALNAEDGEVAWQTKVAG-EALSRPVV-SDGLVLVHTSNGMLQALNESDGAVKWTVNLDVPSLTLRGES  199 (394)
T ss_pred             EEEEEcCCCEEEEEECCCCCCcccccCCC-ceecCCEE-ECCEEEEECCCCEEEEEEccCCCEeeeecCCCCcccccCCC
Confidence            57778889999999998888766543221 12111111 134555677789999999999988776653211100 0000


Q ss_pred             CC--CCCeEEEEecCCCeEEEEecCCcceeeeecCCCCCCCCCCccCCCCcceEEEEECC--CCCEEEEecCCCcEEEEE
Q 021247          111 DP--KGTTLAVAGGGSASVKLWDTATWNLIATLSIPRPEGLKPTDKSSSKKFVLSVAWSP--DGRRIACGSMDGTISVFD  186 (315)
Q Consensus       111 ~~--~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~--~~~~l~~~s~dg~i~i~d  186 (315)
                      +|  .+..+ +.+..++.+..+|..+++.+.......+.+....      .....+.-+|  .+..++.++.+|.+..+|
T Consensus       200 sP~v~~~~v-~~~~~~g~v~a~d~~~G~~~W~~~~~~~~~~~~~------~~~~~~~~sP~v~~~~vy~~~~~g~l~ald  272 (394)
T PRK11138        200 APATAFGGA-IVGGDNGRVSAVLMEQGQLIWQQRISQPTGATEI------DRLVDVDTTPVVVGGVVYALAYNGNLVALD  272 (394)
T ss_pred             CCEEECCEE-EEEcCCCEEEEEEccCChhhheeccccCCCccch------hcccccCCCcEEECCEEEEEEcCCeEEEEE
Confidence            11  11223 4466789999999998887766543222110000      0000111112  245677777889999999


Q ss_pred             cccceeeeeecCCccceEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCeeEEEeeccc-ccEEEEEEcCCCCeEEEEeCCC
Q 021247          187 VTRAKFLHHLEGHFMPVRSLVYSPVDPRVLFSASDDTHVHMYDAEGKSLVTAMSGHA-SWVLSVDASPDGAAITTGSSDR  265 (315)
Q Consensus       187 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~-~~i~~~~~~~~~~~l~s~~~d~  265 (315)
                      +.+++.+-.....  ....+..   .+..++.++.++.+..+|.++++.+=....-. ....+..+  .+..|+.++.||
T Consensus       273 ~~tG~~~W~~~~~--~~~~~~~---~~~~vy~~~~~g~l~ald~~tG~~~W~~~~~~~~~~~sp~v--~~g~l~v~~~~G  345 (394)
T PRK11138        273 LRSGQIVWKREYG--SVNDFAV---DGGRIYLVDQNDRVYALDTRGGVELWSQSDLLHRLLTAPVL--YNGYLVVGDSEG  345 (394)
T ss_pred             CCCCCEEEeecCC--CccCcEE---ECCEEEEEcCCCeEEEEECCCCcEEEcccccCCCcccCCEE--ECCEEEEEeCCC
Confidence            9988765332211  1111111   23466777889999999998876542211101 11111112  245678899999


Q ss_pred             cEEEEecCccceehcccccccceEE-EEEeeCCCEEEEEeCCCcEEEeec
Q 021247          266 TVKLWDLNMRAAMQSMTNHTDQVWG-VSFRPLGGRVVSVSDDKSISLYEY  314 (315)
Q Consensus       266 ~i~iwd~~~~~~~~~~~~~~~~v~~-~~~s~~~~~l~s~~~d~~i~i~~~  314 (315)
                      .+.+.|..+++.+.........+.+ -.+  .++.|+.++.||.+..++.
T Consensus       346 ~l~~ld~~tG~~~~~~~~~~~~~~s~P~~--~~~~l~v~t~~G~l~~~~~  393 (394)
T PRK11138        346 YLHWINREDGRFVAQQKVDSSGFLSEPVV--ADDKLLIQARDGTVYAITR  393 (394)
T ss_pred             EEEEEECCCCCEEEEEEcCCCcceeCCEE--ECCEEEEEeCCceEEEEeC
Confidence            9999999998876554333223332 122  2558999999999988865

>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function

Probab=98.93  E-value=1.2e-05  Score=64.98  Aligned_cols=226  Identities=23%  Similarity=0.340  Sum_probs=138.9

Q ss_pred             EEEeCCCC-CEEEEeeCCC-eEEEEECCCCceeEEeeCCcccEE--EEEECCCCCeEEEEe----cCCCeEEEEecC-Cc
Q 021247           65 SVAAHPSG-IIAASASLDS-FVRVFDVDTNASIATLEASPSEVW--QMQFDPKGTTLAVAG----GGSASVKLWDTA-TW  135 (315)
Q Consensus        65 ~~~~~~~g-~~l~s~~~d~-~i~~w~~~~~~~~~~~~~~~~~v~--~~~~~~~~~~~~~~~----~~d~~i~~~d~~-~~  135 (315)
                      .++.+|.. ..++.+-.-| ...+||..+++....+...++.-.  --.|+|+|+.++.+-    ...|.|.|||.+ +.
T Consensus         9 ~~a~~p~~~~avafaRRPG~~~~v~D~~~g~~~~~~~a~~gRHFyGHg~fs~dG~~LytTEnd~~~g~G~IgVyd~~~~~   88 (305)
T PF07433_consen    9 GVAAHPTRPEAVAFARRPGTFALVFDCRTGQLLQRLWAPPGRHFYGHGVFSPDGRLLYTTENDYETGRGVIGVYDAARGY   88 (305)
T ss_pred             ceeeCCCCCeEEEEEeCCCcEEEEEEcCCCceeeEEcCCCCCEEecCEEEcCCCCEEEEeccccCCCcEEEEEEECcCCc
Confidence            45677744 4444454444 477899999988776654433221  346899999877652    345889999998 55


Q ss_pred             ceeeeecCCCCCCCCCCccCCCCcceEEEEECCCCCEEEEec------------------CCCcEEEEEcccceeeeee-
Q 021247          136 NLIATLSIPRPEGLKPTDKSSSKKFVLSVAWSPDGRRIACGS------------------MDGTISVFDVTRAKFLHHL-  196 (315)
Q Consensus       136 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~s------------------~dg~i~i~d~~~~~~~~~~-  196 (315)
                      +.+..+...   +..          ...+.+.|||+.|+++-                  ++..+.+.|..+++.+... 
T Consensus        89 ~ri~E~~s~---GIG----------PHel~l~pDG~tLvVANGGI~Thpd~GR~kLNl~tM~psL~~ld~~sG~ll~q~~  155 (305)
T PF07433_consen   89 RRIGEFPSH---GIG----------PHELLLMPDGETLVVANGGIETHPDSGRAKLNLDTMQPSLVYLDARSGALLEQVE  155 (305)
T ss_pred             EEEeEecCC---CcC----------hhhEEEcCCCCEEEEEcCCCccCcccCceecChhhcCCceEEEecCCCceeeeee
Confidence            555555321   111          22466788886665542                  2334566677888877763 


Q ss_pred             ---cCCccceEEEEEcCCCCcEEEEEeCCC-------eEEEEeCCCCeeEEE-----eecccccEEEEEEcCCCCeE-EE
Q 021247          197 ---EGHFMPVRSLVYSPVDPRVLFSASDDT-------HVHMYDAEGKSLVTA-----MSGHASWVLSVDASPDGAAI-TT  260 (315)
Q Consensus       197 ---~~~~~~v~~~~~~~~~~~~l~s~~~d~-------~i~~wd~~~~~~~~~-----~~~~~~~i~~~~~~~~~~~l-~s  260 (315)
                         ..|..+++-+++.+ ++..++..-..+       -+-+++....-....     ...-.++|-+|++++++..+ +|
T Consensus       156 Lp~~~~~lSiRHLa~~~-~G~V~~a~Q~qg~~~~~~PLva~~~~g~~~~~~~~p~~~~~~l~~Y~gSIa~~~~g~~ia~t  234 (305)
T PF07433_consen  156 LPPDLHQLSIRHLAVDG-DGTVAFAMQYQGDPGDAPPLVALHRRGGALRLLPAPEEQWRRLNGYIGSIAADRDGRLIAVT  234 (305)
T ss_pred             cCccccccceeeEEecC-CCcEEEEEecCCCCCccCCeEEEEcCCCcceeccCChHHHHhhCCceEEEEEeCCCCEEEEE
Confidence               34778999999987 455555444333       133333322111111     11235788999999998766 66


Q ss_pred             EeCCCcEEEEecCccceehcccccccceEEEEEeeCCCEEEEEeCCC
Q 021247          261 GSSDRTVKLWDLNMRAAMQSMTNHTDQVWGVSFRPLGGRVVSVSDDK  307 (315)
Q Consensus       261 ~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~  307 (315)
                      +=..+.+.+||..+++.+....-  ..+-.++-.+++ ++++.+...
T Consensus       235 sPrGg~~~~~d~~tg~~~~~~~l--~D~cGva~~~~~-f~~ssG~G~  278 (305)
T PF07433_consen  235 SPRGGRVAVWDAATGRLLGSVPL--PDACGVAPTDDG-FLVSSGQGQ  278 (305)
T ss_pred             CCCCCEEEEEECCCCCEeecccc--CceeeeeecCCc-eEEeCCCcc
Confidence            66788899999999988876543  233455555554 556655544

>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A

Probab=98.90  E-value=3.8e-06  Score=67.35  Aligned_cols=210  Identities=18%  Similarity=0.227  Sum_probs=130.2

Q ss_pred             CCeEEEEECCCCceeEEeeCCc--ccEEEEEECCCCCeEEEEecCCCeEEEEecCCcceeeeecCCCCCCCCCCccCCCC
Q 021247           81 DSFVRVFDVDTNASIATLEASP--SEVWQMQFDPKGTTLAVAGGGSASVKLWDTATWNLIATLSIPRPEGLKPTDKSSSK  158 (315)
Q Consensus        81 d~~i~~w~~~~~~~~~~~~~~~--~~v~~~~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~  158 (315)
                      +++|..||..+++.+......+  ........ +.+..++ ++..++.+..||..+++.+.....+.+...         
T Consensus         2 ~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~-~~~~~v~-~~~~~~~l~~~d~~tG~~~W~~~~~~~~~~---------   70 (238)
T PF13360_consen    2 DGTLSALDPRTGKELWSYDLGPGIGGPVATAV-PDGGRVY-VASGDGNLYALDAKTGKVLWRFDLPGPISG---------   70 (238)
T ss_dssp             TSEEEEEETTTTEEEEEEECSSSCSSEEETEE-EETTEEE-EEETTSEEEEEETTTSEEEEEEECSSCGGS---------
T ss_pred             CCEEEEEECCCCCEEEEEECCCCCCCccceEE-EeCCEEE-EEcCCCEEEEEECCCCCEEEEeeccccccc---------
Confidence            6889999999999888775422  22221122 2344454 446899999999999999988876332110         


Q ss_pred             cceEEEEECCCCCEEEEecCCCcEEEEEcccceeeeee-cCCc-----cceEEEEEcCCCCcEEEEEeCCCeEEEEeCCC
Q 021247          159 KFVLSVAWSPDGRRIACGSMDGTISVFDVTRAKFLHHL-EGHF-----MPVRSLVYSPVDPRVLFSASDDTHVHMYDAEG  232 (315)
Q Consensus       159 ~~i~~~~~~~~~~~l~~~s~dg~i~i~d~~~~~~~~~~-~~~~-----~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~  232 (315)
                      .     . ...+..+++++.++.++.+|..+++.+-.. ....     .......+   .+..++.+..++.|..+|.++
T Consensus        71 ~-----~-~~~~~~v~v~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~g~l~~~d~~t  141 (238)
T PF13360_consen   71 A-----P-VVDGGRVYVGTSDGSLYALDAKTGKVLWSIYLTSSPPAGVRSSSSPAV---DGDRLYVGTSSGKLVALDPKT  141 (238)
T ss_dssp             G-----E-EEETTEEEEEETTSEEEEEETTTSCEEEEEEE-SSCTCSTB--SEEEE---ETTEEEEEETCSEEEEEETTT
T ss_pred             e-----e-eecccccccccceeeeEecccCCcceeeeeccccccccccccccCceE---ecCEEEEEeccCcEEEEecCC
Confidence            0     1 123456666668889999999999877653 2221     11112222   245778888899999999999


Q ss_pred             CeeEEEeeccccc----------EEEEEEcCCCCeEEEEeCCCcEEEEecCccceehcccccccceEEEEEeeCCCEEEE
Q 021247          233 KSLVTAMSGHASW----------VLSVDASPDGAAITTGSSDRTVKLWDLNMRAAMQSMTNHTDQVWGVSFRPLGGRVVS  302 (315)
Q Consensus       233 ~~~~~~~~~~~~~----------i~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s  302 (315)
                      ++++-........          +..-....++ .+..++.++.+.-+|+.+++.+-...  ...+.. ...+.+..|+.
T Consensus       142 G~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~~g~~~~~d~~tg~~~w~~~--~~~~~~-~~~~~~~~l~~  217 (238)
T PF13360_consen  142 GKLLWKYPVGEPRGSSPISSFSDINGSPVISDG-RVYVSSGDGRVVAVDLATGEKLWSKP--ISGIYS-LPSVDGGTLYV  217 (238)
T ss_dssp             TEEEEEEESSTT-SS--EEEETTEEEEEECCTT-EEEEECCTSSEEEEETTTTEEEEEEC--SS-ECE-CEECCCTEEEE
T ss_pred             CcEEEEeecCCCCCCcceeeecccccceEEECC-EEEEEcCCCeEEEEECCCCCEEEEec--CCCccC-CceeeCCEEEE
Confidence            9887665443211          1122222244 66667777754334999887542222  222222 24567788888


Q ss_pred             EeCCCcEEEeec
Q 021247          303 VSDDKSISLYEY  314 (315)
Q Consensus       303 ~~~d~~i~i~~~  314 (315)
                      ++.++.|..||.
T Consensus       218 ~~~~~~l~~~d~  229 (238)
T PF13360_consen  218 TSSDGRLYALDL  229 (238)
T ss_dssp             EETTTEEEEEET
T ss_pred             EeCCCEEEEEEC
Confidence            889999999986

...

>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide

Probab=98.88  E-value=1.2e-08  Score=56.53  Aligned_cols=38  Identities=42%  Similarity=0.746  Sum_probs=35.8

Q ss_pred             eeEEEeecccccEEEEEEcCCCCeEEEEeCCCcEEEEe
Q 021247          234 SLVTAMSGHASWVLSVDASPDGAAITTGSSDRTVKLWD  271 (315)
Q Consensus       234 ~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~d~~i~iwd  271 (315)
                      +++..+.+|...|++++|+|++.+|++++.|+.|++||
T Consensus         2 ~~~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd   39 (39)
T PF00400_consen    2 KCVRTFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD   39 (39)
T ss_dssp             EEEEEEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred             eEEEEEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence            56778899999999999999999999999999999997

WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....

>KOG4714 consensus Nucleoporin [Nuclear structure]

Probab=98.87  E-value=5e-08  Score=75.06  Aligned_cols=146  Identities=16%  Similarity=0.178  Sum_probs=94.4

Q ss_pred             EEEEeeCCCcEEEEcCCCCc-ceeeccccccceEEEEeCCCCCEEEEeeC-----CCeEEEEECCCCceeEEeeCCcccE
Q 021247           32 LLLTGSLDETVKLWRPDDMQ-LERTNTGHCLGVVSVAAHPSGIIAASASL-----DSFVRVFDVDTNASIATLEASPSEV  105 (315)
Q Consensus        32 ~l~sgs~d~~v~~w~~~~~~-~~~~~~~h~~~v~~~~~~~~g~~l~s~~~-----d~~i~~w~~~~~~~~~~~~~~~~~v  105 (315)
                      -++++..||.+.+.+.+... +-.....-..+-.+.+....+..+.++..     -+..+.|+++..+.+..-......|
T Consensus       103 ~V~~~~~dg~~~v~s~~~~~~~~~~i~~~~~~~as~~~~~~~~~i~s~~~g~~n~~d~~~a~~~~p~~t~~~~~~~~~~v  182 (319)
T KOG4714|consen  103 RVCIGYADGSLAVFSTDKDLALMSRIPSIHSGSASRKICRHGNSILSGGCGNWNAQDNFYANTLDPIKTLIPSKKALDAV  182 (319)
T ss_pred             ceEecCCCceEEEEechHHHhhhhhcccccccccccceeecccEEecCCcceEeeccceeeecccccccccccccccccc
Confidence            48999999999999876511 11111211222223333344555554321     1234556655443332222333458


Q ss_pred             EEEEECCCCCeEEEEecCCCeEEEEecCCcceeeeecCCCCCCCCCCccCCCCcceEEEEECC-CCCEEEEecCCCcEEE
Q 021247          106 WQMQFDPKGTTLAVAGGGSASVKLWDTATWNLIATLSIPRPEGLKPTDKSSSKKFVLSVAWSP-DGRRIACGSMDGTISV  184 (315)
Q Consensus       106 ~~~~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~s~dg~i~i  184 (315)
                      .+++-+|..+.++++|++||.+.+||.++......            ....|+..+..+-|+| ++..|+++++||.+..
T Consensus       183 ~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~~~p~S------------~l~ahk~~i~eV~FHpk~p~~Lft~sedGslw~  250 (319)
T KOG4714|consen  183 TALCSHPAQQHLVCCGTDDGIVGLWDARNVAMPVS------------LLKAHKAEIWEVHFHPKNPEHLFTCSEDGSLWH  250 (319)
T ss_pred             hhhhCCcccccEEEEecCCCeEEEEEcccccchHH------------HHHHhhhhhhheeccCCCchheeEecCCCcEEE
Confidence            89999999999999999999999999986422111            1234667788999999 5789999999999999


Q ss_pred             EEccc
Q 021247          185 FDVTR  189 (315)
Q Consensus       185 ~d~~~  189 (315)
                      ||..+
T Consensus       251 wdas~  255 (319)
T KOG4714|consen  251 WDAST  255 (319)
T ss_pred             EcCCC
Confidence            99754

>KOG2695 consensus WD40 repeat protein [General function prediction only]

Probab=98.86  E-value=1.2e-08  Score=81.41  Aligned_cols=152  Identities=20%  Similarity=0.281  Sum_probs=107.4

Q ss_pred             EEeeCCCeEEEEECCCCceeEEeeCCcccEEEEEECCCCCeEEEEecCCCeEEEEecCCcceeeeecCCCCCCCCCCccC
Q 021247           76 ASASLDSFVRVFDVDTNASIATLEASPSEVWQMQFDPKGTTLAVAGGGSASVKLWDTATWNLIATLSIPRPEGLKPTDKS  155 (315)
Q Consensus        76 ~s~~~d~~i~~w~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~  155 (315)
                      ++.+.+-.+-+-|++++-. +.+. ....|.+++|.-.++ +++.|..+|.|..+|+|..+.         ....+....
T Consensus       228 fs~G~sqqv~L~nvetg~~-qsf~-sksDVfAlQf~~s~n-Lv~~GcRngeI~~iDLR~rnq---------G~~~~a~rl  295 (425)
T KOG2695|consen  228 FSVGLSQQVLLTNVETGHQ-QSFQ-SKSDVFALQFAGSDN-LVFNGCRNGEIFVIDLRCRNQ---------GNGWCAQRL  295 (425)
T ss_pred             ecccccceeEEEEeecccc-cccc-cchhHHHHHhcccCC-eeEecccCCcEEEEEeeeccc---------CCCcceEEE
Confidence            5566777788888877632 2222 566788888987766 557888999999999986421         111122222


Q ss_pred             CCCcceEEEEECC-CCCEEEEecCCCcEEEEEccccee---eeeecCCccceEEEEE--cCCCCcEEEEEeCCCeEEEEe
Q 021247          156 SSKKFVLSVAWSP-DGRRIACGSMDGTISVFDVTRAKF---LHHLEGHFMPVRSLVY--SPVDPRVLFSASDDTHVHMYD  229 (315)
Q Consensus       156 ~~~~~i~~~~~~~-~~~~l~~~s~dg~i~i~d~~~~~~---~~~~~~~~~~v~~~~~--~~~~~~~l~s~~~d~~i~~wd  229 (315)
                      -|...|+++..-. ++.+|++.+.+|.|++||++--+.   +....+|...-.-+-+  .+ ....++++++|...++|.
T Consensus       296 yh~Ssvtslq~Lq~s~q~LmaS~M~gkikLyD~R~~K~~~~V~qYeGHvN~~a~l~~~v~~-eeg~I~s~GdDcytRiWs  374 (425)
T KOG2695|consen  296 YHDSSVTSLQILQFSQQKLMASDMTGKIKLYDLRATKCKKSVMQYEGHVNLSAYLPAHVKE-EEGSIFSVGDDCYTRIWS  374 (425)
T ss_pred             EcCcchhhhhhhccccceEeeccCcCceeEeeehhhhcccceeeeeccccccccccccccc-ccceEEEccCeeEEEEEe
Confidence            3444577776655 678999999999999999986666   7778888654433333  33 445788899999999999


Q ss_pred             CCCCeeEEEee
Q 021247          230 AEGKSLVTAMS  240 (315)
Q Consensus       230 ~~~~~~~~~~~  240 (315)
                      ++.+.++..+.
T Consensus       375 l~~ghLl~tip  385 (425)
T KOG2695|consen  375 LDSGHLLCTIP  385 (425)
T ss_pred             cccCceeeccC
Confidence            99998877654

>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function

Probab=98.83  E-value=2.4e-05  Score=63.24  Aligned_cols=223  Identities=17%  Similarity=0.190  Sum_probs=134.7

Q ss_pred             EEEEeecCCCCCcEEEEeeCCCc-EEEEcCCCCcceee--------ccccccceEEEEeCCCCCEEEEeeC-----CCeE
Q 021247           19 AVTWVPATETRPALLLTGSLDET-VKLWRPDDMQLERT--------NTGHCLGVVSVAAHPSGIIAASASL-----DSFV   84 (315)
Q Consensus        19 ~v~~~~~~~~~~~~l~sgs~d~~-v~~w~~~~~~~~~~--------~~~h~~~v~~~~~~~~g~~l~s~~~-----d~~i   84 (315)
                      +++..|...   ..++.+-.-|+ ..+||+.+.+....        +.||      -.|+++|.+|.+.-.     .|.|
T Consensus         9 ~~a~~p~~~---~avafaRRPG~~~~v~D~~~g~~~~~~~a~~gRHFyGH------g~fs~dG~~LytTEnd~~~g~G~I   79 (305)
T PF07433_consen    9 GVAAHPTRP---EAVAFARRPGTFALVFDCRTGQLLQRLWAPPGRHFYGH------GVFSPDGRLLYTTENDYETGRGVI   79 (305)
T ss_pred             ceeeCCCCC---eEEEEEeCCCcEEEEEEcCCCceeeEEcCCCCCEEecC------EEEcCCCCEEEEeccccCCCcEEE
Confidence            445555332   24555555553 56778777665433        3444      358999999988644     4789


Q ss_pred             EEEECC-CCceeEEeeCCcccEEEEEECCCCCeEEEEecC-----------------CCeEEEEecCCcceeeeecCCCC
Q 021247           85 RVFDVD-TNASIATLEASPSEVWQMQFDPKGTTLAVAGGG-----------------SASVKLWDTATWNLIATLSIPRP  146 (315)
Q Consensus        85 ~~w~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~-----------------d~~i~~~d~~~~~~~~~~~~~~~  146 (315)
                      -|||.. +.+.+..+..+.-.--.+.+.|+++.++++-++                 +-.+.+.|..+++++....++. 
T Consensus        80 gVyd~~~~~~ri~E~~s~GIGPHel~l~pDG~tLvVANGGI~Thpd~GR~kLNl~tM~psL~~ld~~sG~ll~q~~Lp~-  158 (305)
T PF07433_consen   80 GVYDAARGYRRIGEFPSHGIGPHELLLMPDGETLVVANGGIETHPDSGRAKLNLDTMQPSLVYLDARSGALLEQVELPP-  158 (305)
T ss_pred             EEEECcCCcEEEeEecCCCcChhhEEEcCCCCEEEEEcCCCccCcccCceecChhhcCCceEEEecCCCceeeeeecCc-
Confidence            999998 445566665544333456688999777665432                 1233444555555555443322 


Q ss_pred             CCCCCCccCCCCcceEEEEECCCCCEEEEecCCCc-------EEEEEcccceeeeee-------cCCccceEEEEEcCCC
Q 021247          147 EGLKPTDKSSSKKFVLSVAWSPDGRRIACGSMDGT-------ISVFDVTRAKFLHHL-------EGHFMPVRSLVYSPVD  212 (315)
Q Consensus       147 ~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~s~dg~-------i~i~d~~~~~~~~~~-------~~~~~~v~~~~~~~~~  212 (315)
                              ..++..|+.+++.++|..++..-..|.       +-+++..  +.+..+       ..-...+-+|++++.+
T Consensus       159 --------~~~~lSiRHLa~~~~G~V~~a~Q~qg~~~~~~PLva~~~~g--~~~~~~~~p~~~~~~l~~Y~gSIa~~~~g  228 (305)
T PF07433_consen  159 --------DLHQLSIRHLAVDGDGTVAFAMQYQGDPGDAPPLVALHRRG--GALRLLPAPEEQWRRLNGYIGSIAADRDG  228 (305)
T ss_pred             --------cccccceeeEEecCCCcEEEEEecCCCCCccCCeEEEEcCC--CcceeccCChHHHHhhCCceEEEEEeCCC
Confidence                    123445899999999877766544332       4444432  222211       1223567899999855


Q ss_pred             CcEEEEEeCCCeEEEEeCCCCeeEEEeecccccEEEEEEcCCCCeEEEEeCC
Q 021247          213 PRVLFSASDDTHVHMYDAEGKSLVTAMSGHASWVLSVDASPDGAAITTGSSD  264 (315)
Q Consensus       213 ~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~d  264 (315)
                      ..+++|+=..+.+.+||..++.++....-  ..+..++..+++ +++|.+..
T Consensus       229 ~~ia~tsPrGg~~~~~d~~tg~~~~~~~l--~D~cGva~~~~~-f~~ssG~G  277 (305)
T PF07433_consen  229 RLIAVTSPRGGRVAVWDAATGRLLGSVPL--PDACGVAPTDDG-FLVSSGQG  277 (305)
T ss_pred             CEEEEECCCCCEEEEEECCCCCEeecccc--CceeeeeecCCc-eEEeCCCc
Confidence            55667777889999999999988765432  224456666665 55655543

>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]

Probab=98.77  E-value=6.1e-06  Score=69.15  Aligned_cols=193  Identities=19%  Similarity=0.248  Sum_probs=125.3

Q ss_pred             CCCCeEEEEecCCCeEEEEecCCcceeeeecCCCCCCCCCCc-cC-CCCcceEEEEECC-CCCEEEEecCCCcEEEEEcc
Q 021247          112 PKGTTLAVAGGGSASVKLWDTATWNLIATLSIPRPEGLKPTD-KS-SSKKFVLSVAWSP-DGRRIACGSMDGTISVFDVT  188 (315)
Q Consensus       112 ~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~-~~-~~~~~i~~~~~~~-~~~~l~~~s~dg~i~i~d~~  188 (315)
                      .+|+.+++.  ..|.|.+||-.+.++ .++.+..+-..++.+ +. ....+...  |++ +|++++..|. |...+.+..
T Consensus       276 sDGkrIvFq--~~GdIylydP~td~l-ekldI~lpl~rk~k~~k~~~pskyled--fa~~~Gd~ia~VSR-GkaFi~~~~  349 (668)
T COG4946         276 SDGKRIVFQ--NAGDIYLYDPETDSL-EKLDIGLPLDRKKKQPKFVNPSKYLED--FAVVNGDYIALVSR-GKAFIMRPW  349 (668)
T ss_pred             CCCcEEEEe--cCCcEEEeCCCcCcc-eeeecCCccccccccccccCHHHhhhh--hccCCCcEEEEEec-CcEEEECCC
Confidence            356666665  346799999876443 333332111101100 00 00011111  232 5777777654 567777654


Q ss_pred             cceeeeeecCCccceEEEEEcCCCCcEEEEEeCCC-eEEEEeCCCCeeEEEeecccccEEEEEEcCCCCeEEEEeCCCcE
Q 021247          189 RAKFLHHLEGHFMPVRSLVYSPVDPRVLFSASDDT-HVHMYDAEGKSLVTAMSGHASWVLSVDASPDGAAITTGSSDRTV  267 (315)
Q Consensus       189 ~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~-~i~~wd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~d~~i  267 (315)
                      .+-.++  .+|...|+-..+.. ++.-++-|..|| .+-+||..+++. +.+...-+.|.++..+|+|+.++.+.....+
T Consensus       350 ~~~~iq--v~~~~~VrY~r~~~-~~e~~vigt~dgD~l~iyd~~~~e~-kr~e~~lg~I~av~vs~dGK~~vvaNdr~el  425 (668)
T COG4946         350 DGYSIQ--VGKKGGVRYRRIQV-DPEGDVIGTNDGDKLGIYDKDGGEV-KRIEKDLGNIEAVKVSPDGKKVVVANDRFEL  425 (668)
T ss_pred             CCeeEE--cCCCCceEEEEEcc-CCcceEEeccCCceEEEEecCCceE-EEeeCCccceEEEEEcCCCcEEEEEcCceEE
Confidence            443332  34556677777765 455788888888 899999988754 4455667789999999999999999888889


Q ss_pred             EEEecCccceehcccccccceEEEEEeeCCCEEEEEeCCC----cEEEeec
Q 021247          268 KLWDLNMRAAMQSMTNHTDQVWGVSFRPLGGRVVSVSDDK----SISLYEY  314 (315)
Q Consensus       268 ~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~----~i~i~~~  314 (315)
                      .+.|+.++.....-....+-|+..+|||+++++|-+=-+|    .|+|||.
T Consensus       426 ~vididngnv~~idkS~~~lItdf~~~~nsr~iAYafP~gy~tq~Iklydm  476 (668)
T COG4946         426 WVIDIDNGNVRLIDKSEYGLITDFDWHPNSRWIAYAFPEGYYTQSIKLYDM  476 (668)
T ss_pred             EEEEecCCCeeEecccccceeEEEEEcCCceeEEEecCcceeeeeEEEEec
Confidence            9999998865433334457899999999999998765554    6788775

>PRK11138 outer membrane biogenesis protein BamB; Provisional

Probab=98.75  E-value=1.4e-05  Score=69.20  Aligned_cols=265  Identities=10%  Similarity=0.016  Sum_probs=147.6

Q ss_pred             cEEEEeeCCCcEEEEcCCCCcceeeccccc-cceE------EEEeCC--CCCEEEEeeCCCeEEEEECCCCceeEEeeCC
Q 021247           31 ALLLTGSLDETVKLWRPDDMQLERTNTGHC-LGVV------SVAAHP--SGIIAASASLDSFVRVFDVDTNASIATLEAS  101 (315)
Q Consensus        31 ~~l~sgs~d~~v~~w~~~~~~~~~~~~~h~-~~v~------~~~~~~--~g~~l~s~~~d~~i~~w~~~~~~~~~~~~~~  101 (315)
                      ..++.++.+|.+.-+|.++++......-.. ....      .+.-.|  .+..++.++.++.++.+|.++++.+...+..
T Consensus        70 ~~vy~~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~v~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~  149 (394)
T PRK11138         70 NKVYAADRAGLVKALDADTGKEIWSVDLSEKDGWFSKNKSALLSGGVTVAGGKVYIGSEKGQVYALNAEDGEVAWQTKVA  149 (394)
T ss_pred             CEEEEECCCCeEEEEECCCCcEeeEEcCCCcccccccccccccccccEEECCEEEEEcCCCEEEEEECCCCCCcccccCC
Confidence            467888888999999988877655432111 0000      001111  3445666778999999999999887766543


Q ss_pred             cccEEEEEECCCCCeEEEEecCCCeEEEEecCCcceeeeecCCCCCCCCCCccCCCCcceEEEEECCCCCEEEEecCCCc
Q 021247          102 PSEVWQMQFDPKGTTLAVAGGGSASVKLWDTATWNLIATLSIPRPEGLKPTDKSSSKKFVLSVAWSPDGRRIACGSMDGT  181 (315)
Q Consensus       102 ~~~v~~~~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~s~dg~  181 (315)
                      ......-...  +..+ +.+..++.+..+|..+++.+.......+..    .......++    .  .+..++.++.+|.
T Consensus       150 ~~~~ssP~v~--~~~v-~v~~~~g~l~ald~~tG~~~W~~~~~~~~~----~~~~~~sP~----v--~~~~v~~~~~~g~  216 (394)
T PRK11138        150 GEALSRPVVS--DGLV-LVHTSNGMLQALNESDGAVKWTVNLDVPSL----TLRGESAPA----T--AFGGAIVGGDNGR  216 (394)
T ss_pred             CceecCCEEE--CCEE-EEECCCCEEEEEEccCCCEeeeecCCCCcc----cccCCCCCE----E--ECCEEEEEcCCCE
Confidence            2211111111  2333 446678999999999999988775432110    000001111    1  1235666778889


Q ss_pred             EEEEEcccceeeeeecCCcc----c---eEEEEEcCC-CCcEEEEEeCCCeEEEEeCCCCeeEEEeecccccEEEEEEcC
Q 021247          182 ISVFDVTRAKFLHHLEGHFM----P---VRSLVYSPV-DPRVLFSASDDTHVHMYDAEGKSLVTAMSGHASWVLSVDASP  253 (315)
Q Consensus       182 i~i~d~~~~~~~~~~~~~~~----~---v~~~~~~~~-~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~i~~~~~~~  253 (315)
                      +..+|..+++.+-.......    .   ...+.-+|. .+..++.++.++.+..+|.++++.+=...  ......+..  
T Consensus       217 v~a~d~~~G~~~W~~~~~~~~~~~~~~~~~~~~~sP~v~~~~vy~~~~~g~l~ald~~tG~~~W~~~--~~~~~~~~~--  292 (394)
T PRK11138        217 VSAVLMEQGQLIWQQRISQPTGATEIDRLVDVDTTPVVVGGVVYALAYNGNLVALDLRSGQIVWKRE--YGSVNDFAV--  292 (394)
T ss_pred             EEEEEccCChhhheeccccCCCccchhcccccCCCcEEECCEEEEEEcCCeEEEEECCCCCEEEeec--CCCccCcEE--
Confidence            99999888775433221000    0   001111221 23356667788999999998876542221  111111222  


Q ss_pred             CCCeEEEEeCCCcEEEEecCccceehcccc-cccceEEEEEeeCCCEEEEEeCCCcEEEeec
Q 021247          254 DGAAITTGSSDRTVKLWDLNMRAAMQSMTN-HTDQVWGVSFRPLGGRVVSVSDDKSISLYEY  314 (315)
Q Consensus       254 ~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~-~~~~v~~~~~s~~~~~l~s~~~d~~i~i~~~  314 (315)
                      .+..++.++.+|.+..+|..+++.+=.... ......+...  .+.+|+.++.||.+...|.
T Consensus       293 ~~~~vy~~~~~g~l~ald~~tG~~~W~~~~~~~~~~~sp~v--~~g~l~v~~~~G~l~~ld~  352 (394)
T PRK11138        293 DGGRIYLVDQNDRVYALDTRGGVELWSQSDLLHRLLTAPVL--YNGYLVVGDSEGYLHWINR  352 (394)
T ss_pred             ECCEEEEEcCCCeEEEEECCCCcEEEcccccCCCcccCCEE--ECCEEEEEeCCCEEEEEEC
Confidence            345677788899999999988764321111 0111111122  2567888888888877664

>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]

Probab=98.72  E-value=3.4e-07  Score=82.05  Aligned_cols=178  Identities=13%  Similarity=0.171  Sum_probs=127.9

Q ss_pred             EEEEecCCCeEEEEecCCcceeeeecCCCCCCCCCCccCCCCcceEEEEECCCCCEEEEecCCCcEEEEEcccceeeeee
Q 021247          117 LAVAGGGSASVKLWDTATWNLIATLSIPRPEGLKPTDKSSSKKFVLSVAWSPDGRRIACGSMDGTISVFDVTRAKFLHHL  196 (315)
Q Consensus       117 ~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~s~dg~i~i~d~~~~~~~~~~  196 (315)
                      .++.|+-...+..+|+++.+.........+             .+.-|+  .+++.+.+|...|.|.+-|+.+.+.+.++
T Consensus       149 ~~i~Gg~Q~~li~~Dl~~~~e~r~~~v~a~-------------~v~imR--~Nnr~lf~G~t~G~V~LrD~~s~~~iht~  213 (1118)
T KOG1275|consen  149 TLIMGGLQEKLIHIDLNTEKETRTTNVSAS-------------GVTIMR--YNNRNLFCGDTRGTVFLRDPNSFETIHTF  213 (1118)
T ss_pred             ceeecchhhheeeeecccceeeeeeeccCC-------------ceEEEE--ecCcEEEeecccceEEeecCCcCceeeee
Confidence            344566666788889988776665544322             133344  35789999999999999999999999999


Q ss_pred             cCCccceEEEEEcCCCCcEEEEEeC---------CCeEEEEeCCCCeeEEEeecccccEEEEEEcCC-CCeEEEEeCCCc
Q 021247          197 EGHFMPVRSLVYSPVDPRVLFSASD---------DTHVHMYDAEGKSLVTAMSGHASWVLSVDASPD-GAAITTGSSDRT  266 (315)
Q Consensus       197 ~~~~~~v~~~~~~~~~~~~l~s~~~---------d~~i~~wd~~~~~~~~~~~~~~~~i~~~~~~~~-~~~l~s~~~d~~  266 (315)
                      ..|.+.+.++..   .+++|+++|-         |..|+|||++..+.+..+.-+.++ .=+.|.|. ...+++++..|.
T Consensus       214 ~aHs~siSDfDv---~GNlLitCG~S~R~~~l~~D~FvkVYDLRmmral~PI~~~~~P-~flrf~Psl~t~~~V~S~sGq  289 (1118)
T KOG1275|consen  214 DAHSGSISDFDV---QGNLLITCGYSMRRYNLAMDPFVKVYDLRMMRALSPIQFPYGP-QFLRFHPSLTTRLAVTSQSGQ  289 (1118)
T ss_pred             eccccceeeeec---cCCeEEEeecccccccccccchhhhhhhhhhhccCCcccccCc-hhhhhcccccceEEEEecccc
Confidence            999999988775   4678888873         667999999876655444333332 23556774 346788888899


Q ss_pred             EEEEecCcc-c---eehcccccccceEEEEEeeCCCEEEEEeCCCcEEEee
Q 021247          267 VKLWDLNMR-A---AMQSMTNHTDQVWGVSFRPLGGRVVSVSDDKSISLYE  313 (315)
Q Consensus       267 i~iwd~~~~-~---~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~i~i~~  313 (315)
                      ..+-|.... .   ....+...+..+.+..+|++|..++.+..+|.|.+|-
T Consensus       290 ~q~vd~~~lsNP~~~~~~v~p~~s~i~~fDiSsn~~alafgd~~g~v~~wa  340 (1118)
T KOG1275|consen  290 FQFVDTATLSNPPAGVKMVNPNGSGISAFDISSNGDALAFGDHEGHVNLWA  340 (1118)
T ss_pred             eeeccccccCCCccceeEEccCCCcceeEEecCCCceEEEecccCcEeeec
Confidence            988883321 1   1222222334589999999999999999999999995

>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]

Probab=98.68  E-value=1.3e-06  Score=78.50  Aligned_cols=181  Identities=19%  Similarity=0.266  Sum_probs=131.9

Q ss_pred             CCEEEEeeCCCeEEEEECCCCceeEEeeCCcccEEEEEECCCCCeEEEEecCCCeEEEEecCCcceeeeecCCCCCCCCC
Q 021247           72 GIIAASASLDSFVRVFDVDTNASIATLEASPSEVWQMQFDPKGTTLAVAGGGSASVKLWDTATWNLIATLSIPRPEGLKP  151 (315)
Q Consensus        72 g~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~  151 (315)
                      +..++-|+-...+-.+|+++.+..+........+.-++.+   +.++++|...|+|.+-|.++.+.++++.-        
T Consensus       147 ~~~~i~Gg~Q~~li~~Dl~~~~e~r~~~v~a~~v~imR~N---nr~lf~G~t~G~V~LrD~~s~~~iht~~a--------  215 (1118)
T KOG1275|consen  147 PSTLIMGGLQEKLIHIDLNTEKETRTTNVSASGVTIMRYN---NRNLFCGDTRGTVFLRDPNSFETIHTFDA--------  215 (1118)
T ss_pred             CcceeecchhhheeeeecccceeeeeeeccCCceEEEEec---CcEEEeecccceEEeecCCcCceeeeeec--------
Confidence            3455666666677788998887776665555557777764   23567888899999999999888877743        


Q ss_pred             CccCCCCcceEEEEECCCCCEEEEecC---------CCcEEEEEcccceeeeeecCCccceEEEEEcCCCCcEEEEEeCC
Q 021247          152 TDKSSSKKFVLSVAWSPDGRRIACGSM---------DGTISVFDVTRAKFLHHLEGHFMPVRSLVYSPVDPRVLFSASDD  222 (315)
Q Consensus       152 ~~~~~~~~~i~~~~~~~~~~~l~~~s~---------dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d  222 (315)
                           |...|.  +|+-.|+.|++++.         |.-|++||++..+.+.-+.-+-++ .-+.|+|.-...++.++..
T Consensus       216 -----Hs~siS--DfDv~GNlLitCG~S~R~~~l~~D~FvkVYDLRmmral~PI~~~~~P-~flrf~Psl~t~~~V~S~s  287 (1118)
T KOG1275|consen  216 -----HSGSIS--DFDVQGNLLITCGYSMRRYNLAMDPFVKVYDLRMMRALSPIQFPYGP-QFLRFHPSLTTRLAVTSQS  287 (1118)
T ss_pred             -----ccccee--eeeccCCeEEEeecccccccccccchhhhhhhhhhhccCCcccccCc-hhhhhcccccceEEEEecc
Confidence                 333354  44556888888764         556899999988877665544444 5567888877889999999


Q ss_pred             CeEEEEeCCC---Ce-eEEEeecccccEEEEEEcCCCCeEEEEeCCCcEEEEe
Q 021247          223 THVHMYDAEG---KS-LVTAMSGHASWVLSVDASPDGAAITTGSSDRTVKLWD  271 (315)
Q Consensus       223 ~~i~~wd~~~---~~-~~~~~~~~~~~i~~~~~~~~~~~l~s~~~d~~i~iwd  271 (315)
                      |...+-|..+   .. -+.........+..++++++++.++-|..+|.|.+|-
T Consensus       288 Gq~q~vd~~~lsNP~~~~~~v~p~~s~i~~fDiSsn~~alafgd~~g~v~~wa  340 (1118)
T KOG1275|consen  288 GQFQFVDTATLSNPPAGVKMVNPNGSGISAFDISSNGDALAFGDHEGHVNLWA  340 (1118)
T ss_pred             cceeeccccccCCCccceeEEccCCCcceeEEecCCCceEEEecccCcEeeec
Confidence            9999988432   21 1222233345599999999999999999999999996

>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats

Probab=98.67  E-value=2.1e-05  Score=67.88  Aligned_cols=109  Identities=16%  Similarity=0.233  Sum_probs=78.7

Q ss_pred             EEEEEcCCCCcEEEEE----eCCCe----EEEEeCCCCeeEE---EeecccccEEEEEEcCCCCeEEEEeCCCcEEEEec
Q 021247          204 RSLVYSPVDPRVLFSA----SDDTH----VHMYDAEGKSLVT---AMSGHASWVLSVDASPDGAAITTGSSDRTVKLWDL  272 (315)
Q Consensus       204 ~~~~~~~~~~~~l~s~----~~d~~----i~~wd~~~~~~~~---~~~~~~~~i~~~~~~~~~~~l~s~~~d~~i~iwd~  272 (315)
                      .++.|+..+++.+.+.    +.+|.    -.+|+....++..   ........+.+++++|+...|+.|+.||.|.+||.
T Consensus       209 l~~~Fs~~~~~qi~tVE~s~s~~g~~~~d~ciYE~~r~klqrvsvtsipL~s~v~~ca~sp~E~kLvlGC~DgSiiLyD~  288 (545)
T PF11768_consen  209 LDVEFSLNQPYQIHTVEQSISVKGEPSADSCIYECSRNKLQRVSVTSIPLPSQVICCARSPSEDKLVLGCEDGSIILYDT  288 (545)
T ss_pred             EEEEccCCCCcEEEEEEEecCCCCCceeEEEEEEeecCceeEEEEEEEecCCcceEEecCcccceEEEEecCCeEEEEEc
Confidence            5677776666666544    23443    2356655433221   12245678999999999999999999999999999


Q ss_pred             CccceehcccccccceEEEEEeeCCCEEEEEeCCCcEEEeec
Q 021247          273 NMRAAMQSMTNHTDQVWGVSFRPLGGRVVSVSDDKSISLYEY  314 (315)
Q Consensus       273 ~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~i~i~~~  314 (315)
                      ..+-..  .....-.++.++|||+|..++.+++.|.+++||.
T Consensus       289 ~~~~t~--~~ka~~~P~~iaWHp~gai~~V~s~qGelQ~FD~  328 (545)
T PF11768_consen  289 TRGVTL--LAKAEFIPTLIAWHPDGAIFVVGSEQGELQCFDM  328 (545)
T ss_pred             CCCeee--eeeecccceEEEEcCCCcEEEEEcCCceEEEEEe
Confidence            765322  2233345778999999999999999999999996

>PRK02888 nitrous-oxide reductase; Validated

Probab=98.67  E-value=1.9e-05  Score=69.79  Aligned_cols=181  Identities=13%  Similarity=0.083  Sum_probs=108.5

Q ss_pred             CCCCCeEEEEecCCCeEEEEecCCcceeeeecCCCCCCCCCCccCCCCcceEEEEECCCCCEEEEecCCC----cEEEEE
Q 021247          111 DPKGTTLAVAGGGSASVKLWDTATWNLIATLSIPRPEGLKPTDKSSSKKFVLSVAWSPDGRRIACGSMDG----TISVFD  186 (315)
Q Consensus       111 ~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~s~dg----~i~i~d  186 (315)
                      .|+|+.+....-..+.+.+.|..+.+....+..+..              ...+.++++|+++++.+.+.    .+...+
T Consensus       201 pnDGk~l~~~~ey~~~vSvID~etmeV~~qV~Vdgn--------------pd~v~~spdGk~afvTsyNsE~G~tl~em~  266 (635)
T PRK02888        201 PNDGKDLDDPKKYRSLFTAVDAETMEVAWQVMVDGN--------------LDNVDTDYDGKYAFSTCYNSEEGVTLAEMM  266 (635)
T ss_pred             CCCCCEeecccceeEEEEEEECccceEEEEEEeCCC--------------cccceECCCCCEEEEeccCcccCcceeeec
Confidence            445554444444456777888887777666654322              24578899999988775322    233333


Q ss_pred             cccceeeeeecCCccceEEEEEcCCCCcEEEEEeCCCeEEEEeCCC-----CeeEEEeecccccEEEEEEcCCCCeEEE-
Q 021247          187 VTRAKFLHHLEGHFMPVRSLVYSPVDPRVLFSASDDTHVHMYDAEG-----KSLVTAMSGHASWVLSVDASPDGAAITT-  260 (315)
Q Consensus       187 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~-----~~~~~~~~~~~~~i~~~~~~~~~~~l~s-  260 (315)
                      .........+....  +  ..+.+ ++++...  .+++|.+.|.++     ...+..+. -......++++|||+++++ 
T Consensus       267 a~e~d~~vvfni~~--i--ea~vk-dGK~~~V--~gn~V~VID~~t~~~~~~~v~~yIP-VGKsPHGV~vSPDGkylyVa  338 (635)
T PRK02888        267 AAERDWVVVFNIAR--I--EEAVK-AGKFKTI--GGSKVPVVDGRKAANAGSALTRYVP-VPKNPHGVNTSPDGKYFIAN  338 (635)
T ss_pred             cccCceEEEEchHH--H--HHhhh-CCCEEEE--CCCEEEEEECCccccCCcceEEEEE-CCCCccceEECCCCCEEEEe
Confidence            22111111111000  0  01122 3434333  367899999887     34444433 3445778999999997755 


Q ss_pred             EeCCCcEEEEecCccce------------ehcccccccceEEEEEeeCCCEEEEEeCCCcEEEeec
Q 021247          261 GSSDRTVKLWDLNMRAA------------MQSMTNHTDQVWGVSFRPLGGRVVSVSDDKSISLYEY  314 (315)
Q Consensus       261 ~~~d~~i~iwd~~~~~~------------~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~i~i~~~  314 (315)
                      +..+.+|.|.|+.+.+.            ..+..- .......+|.++|+...|.-.|..|-.|++
T Consensus       339 nklS~tVSVIDv~k~k~~~~~~~~~~~~vvaevev-GlGPLHTaFDg~G~aytslf~dsqv~kwn~  403 (635)
T PRK02888        339 GKLSPTVTVIDVRKLDDLFDGKIKPRDAVVAEPEL-GLGPLHTAFDGRGNAYTTLFLDSQIVKWNI  403 (635)
T ss_pred             CCCCCcEEEEEChhhhhhhhccCCccceEEEeecc-CCCcceEEECCCCCEEEeEeecceeEEEeh
Confidence            45588999999987542            122211 223446899999998889999999999986

>COG3391 Uncharacterized conserved protein [Function unknown]

Probab=98.65  E-value=0.00019  Score=61.63  Aligned_cols=256  Identities=21%  Similarity=0.293  Sum_probs=161.5

Q ss_pred             EEEEcCCCCcceeeccccccceEEEEeCCCCCEE-EEeeCCCeEEEEECCCCceeEEeeCCcccEEEEEECCCCCeEEEE
Q 021247           42 VKLWRPDDMQLERTNTGHCLGVVSVAAHPSGIIA-ASASLDSFVRVFDVDTNASIATLEASPSEVWQMQFDPKGTTLAVA  120 (315)
Q Consensus        42 v~~w~~~~~~~~~~~~~h~~~v~~~~~~~~g~~l-~s~~~d~~i~~w~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~  120 (315)
                      +.+++..+........-+. ....+...+++..+ ++-.....+...+................-..+..++.++.+++.
T Consensus        13 ~~v~~~~~~~~~~~~~~~~-~~~~v~~~~~g~~~~v~~~~~~~~~~~~~~~n~~~~~~~~g~~~p~~i~v~~~~~~vyv~   91 (381)
T COG3391          13 VSVINTGTNKVTAAISLGR-GPGGVAVNPDGTQVYVANSGSNDVSVIDATSNTVTQSLSVGGVYPAGVAVNPAGNKVYVT   91 (381)
T ss_pred             eEEEeecccEEEEEeecCC-CCceeEEcCccCEEEEEeecCceeeecccccceeeeeccCCCccccceeeCCCCCeEEEe
Confidence            4555544443333222111 44566677777433 333333355555554222112122111334467788888888888


Q ss_pred             ecCCCeEEEEecCCcceeeeecCCCCCCCCCCccCCCCcceEEEEECCCCCEEEEecC---CCcEEEEEcccceeeeeec
Q 021247          121 GGGSASVKLWDTATWNLIATLSIPRPEGLKPTDKSSSKKFVLSVAWSPDGRRIACGSM---DGTISVFDVTRAKFLHHLE  197 (315)
Q Consensus       121 ~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~s~---dg~i~i~d~~~~~~~~~~~  197 (315)
                      ...+..|.+.|..+.+.........              ....++++++++.+.++..   ++.+.+.|..+++......
T Consensus        92 ~~~~~~v~vid~~~~~~~~~~~vG~--------------~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~~~~~~~~  157 (381)
T COG3391          92 TGDSNTVSVIDTATNTVLGSIPVGL--------------GPVGLAVDPDGKYVYVANAGNGNNTVSVIDAATNKVTATIP  157 (381)
T ss_pred             cCCCCeEEEEcCcccceeeEeeecc--------------CCceEEECCCCCEEEEEecccCCceEEEEeCCCCeEEEEEe
Confidence            8778999999987766666554322              1357999999987765443   7899999999888877765


Q ss_pred             CCccceEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCeeEE-E---eecccccEEEEEEcCCCCeEEEEeCC---CcEEEE
Q 021247          198 GHFMPVRSLVYSPVDPRVLFSASDDTHVHMYDAEGKSLVT-A---MSGHASWVLSVDASPDGAAITTGSSD---RTVKLW  270 (315)
Q Consensus       198 ~~~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~-~---~~~~~~~i~~~~~~~~~~~l~s~~~d---~~i~iw  270 (315)
                      ....+ ..+++.|.+...+++-..++.|.+.|.+...... .   ...-......+.++|++..+......   +.+...
T Consensus       158 vG~~P-~~~a~~p~g~~vyv~~~~~~~v~vi~~~~~~v~~~~~~~~~~~~~~P~~i~v~~~g~~~yV~~~~~~~~~v~~i  236 (381)
T COG3391         158 VGNTP-TGVAVDPDGNKVYVTNSDDNTVSVIDTSGNSVVRGSVGSLVGVGTGPAGIAVDPDGNRVYVANDGSGSNNVLKI  236 (381)
T ss_pred             cCCCc-ceEEECCCCCeEEEEecCCCeEEEEeCCCcceeccccccccccCCCCceEEECCCCCEEEEEeccCCCceEEEE
Confidence            54445 8889999766677777789999999987765553 1   11112334578899999866555444   589899


Q ss_pred             ecCccceehc-ccccccceEEEEEeeCCCEEEEE-eCCCcEEEee
Q 021247          271 DLNMRAAMQS-MTNHTDQVWGVSFRPLGGRVVSV-SDDKSISLYE  313 (315)
Q Consensus       271 d~~~~~~~~~-~~~~~~~v~~~~~s~~~~~l~s~-~~d~~i~i~~  313 (315)
                      |...+..... ..........+..+|+|..+... +..+.+.+-|
T Consensus       237 d~~~~~v~~~~~~~~~~~~~~v~~~p~g~~~yv~~~~~~~V~vid  281 (381)
T COG3391         237 DTATGNVTATDLPVGSGAPRGVAVDPAGKAAYVANSQGGTVSVID  281 (381)
T ss_pred             eCCCceEEEeccccccCCCCceeECCCCCEEEEEecCCCeEEEEe
Confidence            9888766554 22211145678999999988655 4446666654

>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]

Probab=98.63  E-value=3.5e-08  Score=88.04  Aligned_cols=216  Identities=17%  Similarity=0.220  Sum_probs=147.5

Q ss_pred             eeccccccceEEEEeCCCCCEEEEeeCCCeEEEEECCCCceeEEeeCCcccEEEEEECCCCCeEEEEecCCC-eEEEEec
Q 021247           54 RTNTGHCLGVVSVAAHPSGIIAASASLDSFVRVFDVDTNASIATLEASPSEVWQMQFDPKGTTLAVAGGGSA-SVKLWDT  132 (315)
Q Consensus        54 ~~~~~h~~~v~~~~~~~~g~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~-~i~~~d~  132 (315)
                      +.+..|....++++|+...+.|+.|+..|.|+++++.+|........|..++.-+.-+.+|...+.+++... -..+|++
T Consensus      1095 ~~frd~~~~fTc~afs~~~~hL~vG~~~Geik~~nv~sG~~e~s~ncH~SavT~vePs~dgs~~Ltsss~S~PlsaLW~~ 1174 (1516)
T KOG1832|consen 1095 RSFRDETALFTCIAFSGGTNHLAVGSHAGEIKIFNVSSGSMEESVNCHQSAVTLVEPSVDGSTQLTSSSSSSPLSALWDA 1174 (1516)
T ss_pred             hhhhccccceeeEEeecCCceEEeeeccceEEEEEccCccccccccccccccccccccCCcceeeeeccccCchHHHhcc
Confidence            445668889999999999999999999999999999999998889999999999988888887766655554 5678887


Q ss_pred             CC-cceeeeecCCCCCCCCCCccCCCCcceEEEEECCCCCEEEEecCCCcEEEEEcccceeeeeec----CCccceEEEE
Q 021247          133 AT-WNLIATLSIPRPEGLKPTDKSSSKKFVLSVAWSPDGRRIACGSMDGTISVFDVTRAKFLHHLE----GHFMPVRSLV  207 (315)
Q Consensus       133 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~s~dg~i~i~d~~~~~~~~~~~----~~~~~v~~~~  207 (315)
                      .. +...+++.                 .-.++.|+.....-+.|+..-...+||+.++..+.++.    +....-+...
T Consensus      1175 ~s~~~~~Hsf~-----------------ed~~vkFsn~~q~r~~gt~~d~a~~YDvqT~~~l~tylt~~~~~~y~~n~a~ 1237 (1516)
T KOG1832|consen 1175 SSTGGPRHSFD-----------------EDKAVKFSNSLQFRALGTEADDALLYDVQTCSPLQTYLTDTVTSSYSNNLAH 1237 (1516)
T ss_pred             ccccCcccccc-----------------ccceeehhhhHHHHHhcccccceEEEecccCcHHHHhcCcchhhhhhccccc
Confidence            53 11111111                 12366777654444556666678999999987765532    2223336778


Q ss_pred             EcCCCCcEEEEEeCCCeEEEEeCCCCeeEEEeecccccEEEEEEcCCCCeEEEEeCCCcEEEEecCccceehcccccccc
Q 021247          208 YSPVDPRVLFSASDDTHVHMYDAEGKSLVTAMSGHASWVLSVDASPDGAAITTGSSDRTVKLWDLNMRAAMQSMTNHTDQ  287 (315)
Q Consensus       208 ~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~  287 (315)
                      |+|.+ .+++   .||  .+||.+..+.++.+...+..+. =.|+|+|.-++..+     .|||+++.+.++..+.-. +
T Consensus      1238 FsP~D-~LIl---ndG--vLWDvR~~~aIh~FD~ft~~~~-G~FHP~g~eVIINS-----EIwD~RTF~lLh~VP~Ld-q 1304 (1516)
T KOG1832|consen 1238 FSPCD-TLIL---NDG--VLWDVRIPEAIHRFDQFTDYGG-GGFHPSGNEVIINS-----EIWDMRTFKLLHSVPSLD-Q 1304 (1516)
T ss_pred             cCCCc-ceEe---eCc--eeeeeccHHHHhhhhhheeccc-ccccCCCceEEeec-----hhhhhHHHHHHhcCcccc-c
Confidence            88854 3333   233  4799887766655544332222 24899998877665     489999988887764321 2


Q ss_pred             eEEEEEeeCCCEE
Q 021247          288 VWGVSFRPLGGRV  300 (315)
Q Consensus       288 v~~~~~s~~~~~l  300 (315)
                       ..|.|+..|..+
T Consensus      1305 -c~VtFNstG~Vm 1316 (1516)
T KOG1832|consen 1305 -CAVTFNSTGDVM 1316 (1516)
T ss_pred             -eEEEeccCccch
Confidence             245666655543

>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.63  E-value=2.7e-05  Score=69.96  Aligned_cols=205  Identities=16%  Similarity=0.233  Sum_probs=125.1

Q ss_pred             EeCCCCCEEEEeeCCCeEEEEECCCCce-eEEeeCCccc-EEEEEECCCCCeEEEEecCC-C----eEEEEecCCcc---
Q 021247           67 AAHPSGIIAASASLDSFVRVFDVDTNAS-IATLEASPSE-VWQMQFDPKGTTLAVAGGGS-A----SVKLWDTATWN---  136 (315)
Q Consensus        67 ~~~~~g~~l~s~~~d~~i~~w~~~~~~~-~~~~~~~~~~-v~~~~~~~~~~~~~~~~~~d-~----~i~~~d~~~~~---  136 (315)
                      ++++.+..++-|+.+|.|.+.+  .... +..+..++.. |..+ +.-++..++++-+.| +    .+++||+...+   
T Consensus        30 c~~s~~~~vvigt~~G~V~~Ln--~s~~~~~~fqa~~~siv~~L-~~~~~~~~L~sv~Ed~~~np~llkiw~lek~~~n~  106 (933)
T KOG2114|consen   30 CCSSSTGSVVIGTADGRVVILN--SSFQLIRGFQAYEQSIVQFL-YILNKQNFLFSVGEDEQGNPVLLKIWDLEKVDKNN  106 (933)
T ss_pred             EEcCCCceEEEeeccccEEEec--ccceeeehheecchhhhhHh-hcccCceEEEEEeecCCCCceEEEEecccccCCCC
Confidence            4567888999999999876655  3332 3555555544 3333 333343344444333 3    69999987531   


Q ss_pred             -e--e---eeecCCCCCCCCCCccCCCCcceEEEEECCCCCEEEEecCCCcEEEEE--cccceee--eeecCCccceEEE
Q 021247          137 -L--I---ATLSIPRPEGLKPTDKSSSKKFVLSVAWSPDGRRIACGSMDGTISVFD--VTRAKFL--HHLEGHFMPVRSL  206 (315)
Q Consensus       137 -~--~---~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~s~dg~i~i~d--~~~~~~~--~~~~~~~~~v~~~  206 (315)
                       +  +   ..++...+         ....++.+++.+.+-+.+|+|-.+|.|..+.  +...+..  .-......+|+.+
T Consensus       107 sP~c~~~~ri~~~~np---------~~~~p~s~l~Vs~~l~~Iv~Gf~nG~V~~~~GDi~RDrgsr~~~~~~~~~pITgL  177 (933)
T KOG2114|consen  107 SPQCLYEHRIFTIKNP---------TNPSPASSLAVSEDLKTIVCGFTNGLVICYKGDILRDRGSRQDYSHRGKEPITGL  177 (933)
T ss_pred             CcceeeeeeeeccCCC---------CCCCcceEEEEEccccEEEEEecCcEEEEEcCcchhccccceeeeccCCCCceee
Confidence             1  1   01111111         1344578999999989999999999999984  3222211  1222346799999


Q ss_pred             EEcCCCCcEEEEEeCCCeEEEEeCCCCe-eEEEeecccccEEEEEEcCCCCeEEEEeCCCcEEEEecCccceehccc-cc
Q 021247          207 VYSPVDPRVLFSASDDTHVHMYDAEGKS-LVTAMSGHASWVLSVDASPDGAAITTGSSDRTVKLWDLNMRAAMQSMT-NH  284 (315)
Q Consensus       207 ~~~~~~~~~l~s~~~d~~i~~wd~~~~~-~~~~~~~~~~~i~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~-~~  284 (315)
                      ++..++...++.+. -..|.+|.+.++. ....+..|....++..+++....++.++ ...+.+|+...+.+--++. +|
T Consensus       178 ~~~~d~~s~lFv~T-t~~V~~y~l~gr~p~~~~ld~~G~~lnCss~~~~t~qfIca~-~e~l~fY~sd~~~~cfaf~~g~  255 (933)
T KOG2114|consen  178 ALRSDGKSVLFVAT-TEQVMLYSLSGRTPSLKVLDNNGISLNCSSFSDGTYQFICAG-SEFLYFYDSDGRGPCFAFEVGE  255 (933)
T ss_pred             EEecCCceeEEEEe-cceeEEEEecCCCcceeeeccCCccceeeecCCCCccEEEec-CceEEEEcCCCcceeeeecCCC
Confidence            99864444344443 3468999988666 3444677788888888887655344444 4569999987655444454 55


Q ss_pred             c
Q 021247          285 T  285 (315)
Q Consensus       285 ~  285 (315)
                      .
T Consensus       256 k  256 (933)
T KOG2114|consen  256 K  256 (933)
T ss_pred             e
Confidence            4

>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=98.61  E-value=3.6e-06  Score=68.97  Aligned_cols=81  Identities=14%  Similarity=0.139  Sum_probs=68.8

Q ss_pred             hhhccccceEEEEEeecCCCCCcEEEEeeCCCcEEEEcCCCCcceeeccccccceEEEEeCCCC-CEEEEeeCCCeEEEE
Q 021247            9 VENAHEESVWAVTWVPATETRPALLLTGSLDETVKLWRPDDMQLERTNTGHCLGVVSVAAHPSG-IIAASASLDSFVRVF   87 (315)
Q Consensus         9 ~~~~h~~~v~~v~~~~~~~~~~~~l~sgs~d~~v~~w~~~~~~~~~~~~~h~~~v~~~~~~~~g-~~l~s~~~d~~i~~w   87 (315)
                      ++.+|..-|-.++|+|..+   .++..++.+.+|++.|.++.........+ .++.+++|.-+. +.+.+|-..|.|.++
T Consensus       188 ~lp~~g~~IrdlafSp~~~---GLl~~asl~nkiki~dlet~~~vssy~a~-~~~wSC~wDlde~h~IYaGl~nG~Vlvy  263 (463)
T KOG1645|consen  188 ILPGEGSFIRDLAFSPFNE---GLLGLASLGNKIKIMDLETSCVVSSYIAY-NQIWSCCWDLDERHVIYAGLQNGMVLVY  263 (463)
T ss_pred             cccccchhhhhhccCcccc---ceeeeeccCceEEEEecccceeeeheecc-CCceeeeeccCCcceeEEeccCceEEEE
Confidence            4568888999999999754   58999999999999999988777777666 789999998655 788899999999999


Q ss_pred             ECCCCc
Q 021247           88 DVDTNA   93 (315)
Q Consensus        88 ~~~~~~   93 (315)
                      |.+..+
T Consensus       264 D~R~~~  269 (463)
T KOG1645|consen  264 DMRQPE  269 (463)
T ss_pred             EccCCC
Confidence            998653

>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]

Probab=98.61  E-value=2.7e-05  Score=72.47  Aligned_cols=209  Identities=16%  Similarity=0.214  Sum_probs=126.5

Q ss_pred             cceEEEEeCCCCCEEEEeeCCCeEEEEECCCCceeEEeeCCcccEEEEEECCCCCeEEEEecCCCeEEEEecCCcceeee
Q 021247           61 LGVVSVAAHPSGIIAASASLDSFVRVFDVDTNASIATLEASPSEVWQMQFDPKGTTLAVAGGGSASVKLWDTATWNLIAT  140 (315)
Q Consensus        61 ~~v~~~~~~~~g~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~  140 (315)
                      +.|.++.|..+...++.+..+|.|.+-|..+... .....-.+.|.+++|+|++..+++.. ..+++.+-+ .+..++..
T Consensus        69 ~~i~s~~fl~d~~~i~v~~~~G~iilvd~et~~~-eivg~vd~GI~aaswS~Dee~l~liT-~~~tll~mT-~~f~~i~E  145 (1265)
T KOG1920|consen   69 DEIVSVQFLADTNSICVITALGDIILVDPETLEL-EIVGNVDNGISAASWSPDEELLALIT-GRQTLLFMT-KDFEPIAE  145 (1265)
T ss_pred             cceEEEEEecccceEEEEecCCcEEEEcccccce-eeeeeccCceEEEeecCCCcEEEEEe-CCcEEEEEe-ccccchhc
Confidence            5799999999998888899999999988776543 33334456799999999998766543 344544422 22222211


Q ss_pred             ecCC---------------C-------CCC----CCCCcc------CCCCcceEEEEECCCCCEEEEec----CC-CcEE
Q 021247          141 LSIP---------------R-------PEG----LKPTDK------SSSKKFVLSVAWSPDGRRIACGS----MD-GTIS  183 (315)
Q Consensus       141 ~~~~---------------~-------~~~----~~~~~~------~~~~~~i~~~~~~~~~~~l~~~s----~d-g~i~  183 (315)
                      ..+.               +       ..+    ..+...      ....+.-+.+.|--||+++++..    .+ ..|+
T Consensus       146 ~~L~~d~~~~sk~v~VGwGrkeTqfrgs~gr~~~~~~~~~ek~~~~~~~~~~~~~IsWRgDg~~fAVs~~~~~~~~Rkir  225 (1265)
T KOG1920|consen  146 KPLDADDERKSKFVNVGWGRKETQFRGSEGRQAARQKIEKEKALEQIEQDDHKTSISWRGDGEYFAVSFVESETGTRKIR  225 (1265)
T ss_pred             cccccccccccccceecccccceeeecchhhhcccccccccccccchhhccCCceEEEccCCcEEEEEEEeccCCceeEE
Confidence            1110               0       000    000000      00112234699999999998842    23 6899


Q ss_pred             EEEcccceeeeeecCCccceEEEEEcCCCCcEEEEEe---CCCeEEEEeCCCC---eeEEEeecccccEEEEEEcCCCCe
Q 021247          184 VFDVTRAKFLHHLEGHFMPVRSLVYSPVDPRVLFSAS---DDTHVHMYDAEGK---SLVTAMSGHASWVLSVDASPDGAA  257 (315)
Q Consensus       184 i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~---~d~~i~~wd~~~~---~~~~~~~~~~~~i~~~~~~~~~~~  257 (315)
                      +||.+ +..-..-..-.+.-.+++|-| .+.++++-.   .|+.|.+|...+-   +...........+..++|+.++.+
T Consensus       226 V~drE-g~Lns~se~~~~l~~~LsWkP-sgs~iA~iq~~~sd~~IvffErNGL~hg~f~l~~p~de~~ve~L~Wns~sdi  303 (1265)
T KOG1920|consen  226 VYDRE-GALNSTSEPVEGLQHSLSWKP-SGSLIAAIQCKTSDSDIVFFERNGLRHGEFVLPFPLDEKEVEELAWNSNSDI  303 (1265)
T ss_pred             Eeccc-chhhcccCcccccccceeecC-CCCeEeeeeecCCCCcEEEEecCCccccccccCCcccccchheeeecCCCCc
Confidence            99976 332211111222335788998 455666543   4667999986542   222222333344899999999998


Q ss_pred             EEE---EeCCCcEEEEecCc
Q 021247          258 ITT---GSSDRTVKLWDLNM  274 (315)
Q Consensus       258 l~s---~~~d~~i~iwd~~~  274 (315)
                      |++   ......|++|-+..
T Consensus       304 LAv~~~~~e~~~v~lwt~~N  323 (1265)
T KOG1920|consen  304 LAVVTSNLENSLVQLWTTGN  323 (1265)
T ss_pred             eeeeecccccceEEEEEecC
Confidence            877   55556699998764

>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=98.57  E-value=3e-05  Score=66.05  Aligned_cols=262  Identities=16%  Similarity=0.187  Sum_probs=143.4

Q ss_pred             CCcEEEEcCCCCcceeeccccccceEEEEeCCCCCEEEEeeCCCeEEEEECCCCceeEE-eeCC----------------
Q 021247           39 DETVKLWRPDDMQLERTNTGHCLGVVSVAAHPSGIIAASASLDSFVRVFDVDTNASIAT-LEAS----------------  101 (315)
Q Consensus        39 d~~v~~w~~~~~~~~~~~~~h~~~v~~~~~~~~g~~l~s~~~d~~i~~w~~~~~~~~~~-~~~~----------------  101 (315)
                      .+.+.+||..+.+....... ...+....++|+|+.++-.. ++.|.+++..++...+. ..+.                
T Consensus        22 ~~~y~i~d~~~~~~~~l~~~-~~~~~~~~~sP~g~~~~~v~-~~nly~~~~~~~~~~~lT~dg~~~i~nG~~dwvyeEEv   99 (353)
T PF00930_consen   22 KGDYYIYDIETGEITPLTPP-PPKLQDAKWSPDGKYIAFVR-DNNLYLRDLATGQETQLTTDGEPGIYNGVPDWVYEEEV   99 (353)
T ss_dssp             EEEEEEEETTTTEEEESS-E-ETTBSEEEE-SSSTEEEEEE-TTEEEEESSTTSEEEESES--TTTEEESB--HHHHHHT
T ss_pred             ceeEEEEecCCCceEECcCC-ccccccceeecCCCeeEEEe-cCceEEEECCCCCeEEeccccceeEEcCccceeccccc
Confidence            45678889888665444333 56788899999999988775 67899999877754432 1110                


Q ss_pred             cccEEEEEECCCCCeEEEEecCCCeEEEEecCC---c-c---eeeeecCCCCCCCCC-----------------C---cc
Q 021247          102 PSEVWQMQFDPKGTTLAVAGGGSASVKLWDTAT---W-N---LIATLSIPRPEGLKP-----------------T---DK  154 (315)
Q Consensus       102 ~~~v~~~~~~~~~~~~~~~~~~d~~i~~~d~~~---~-~---~~~~~~~~~~~~~~~-----------------~---~~  154 (315)
                      -+.-..+-|+|+++++++..-++..|+.+.+..   . .   .+..+..|.+....+                 .   ..
T Consensus       100 ~~~~~~~~WSpd~~~la~~~~d~~~v~~~~~~~~~~~~~~yp~~~~~~YPk~G~~np~v~l~v~~~~~~~~~~~~~~~~~  179 (353)
T PF00930_consen  100 FDRRSAVWWSPDSKYLAFLRFDEREVPEYPLPDYSPPDSQYPEVESIRYPKAGDPNPRVSLFVVDLASGKTTELDPPNSL  179 (353)
T ss_dssp             SSSSBSEEE-TTSSEEEEEEEE-TTS-EEEEEEESSSTESS-EEEEEE--BTTS---EEEEEEEESSSTCCCEE---HHH
T ss_pred             cccccceEECCCCCEEEEEEECCcCCceEEeeccCCccccCCcccccccCCCCCcCCceEEEEEECCCCcEEEeeecccc
Confidence            112346779999999988776666665554321   1 1   223333222211100                 0   00


Q ss_pred             CCCCcceEEEEECCCCCEEEEecCC-----CcEEEEEcccceeeeeecC----CccceEEEEEc-CCCCcEEEEEeCCCe
Q 021247          155 SSSKKFVLSVAWSPDGRRIACGSMD-----GTISVFDVTRAKFLHHLEG----HFMPVRSLVYS-PVDPRVLFSASDDTH  224 (315)
Q Consensus       155 ~~~~~~i~~~~~~~~~~~l~~~s~d-----g~i~i~d~~~~~~~~~~~~----~~~~v~~~~~~-~~~~~~l~s~~~d~~  224 (315)
                      ......+..+.|.++++.|+....+     ..+.++|..+++.......    --.......|. +.+..++.....+|.
T Consensus       180 ~~~~~yl~~v~W~~d~~~l~~~~~nR~q~~~~l~~~d~~tg~~~~~~~e~~~~Wv~~~~~~~~~~~~~~~~l~~s~~~G~  259 (353)
T PF00930_consen  180 NPQDYYLTRVGWSPDGKRLWVQWLNRDQNRLDLVLCDASTGETRVVLEETSDGWVDVYDPPHFLGPDGNEFLWISERDGY  259 (353)
T ss_dssp             HTSSEEEEEEEEEETTEEEEEEEEETTSTEEEEEEEEECTTTCEEEEEEESSSSSSSSSEEEE-TTTSSEEEEEEETTSS
T ss_pred             CCCccCcccceecCCCcEEEEEEcccCCCEEEEEEEECCCCceeEEEEecCCcceeeecccccccCCCCEEEEEEEcCCC
Confidence            1234557889999998855443322     2477778876544222211    11122244454 656667766667775


Q ss_pred             --EEEEeCCCCeeEEEeecccccEEE-EEEcCCCCeE-EEEeCCC----cEEEEecCccceehcccccccceEEEEEeeC
Q 021247          225 --VHMYDAEGKSLVTAMSGHASWVLS-VDASPDGAAI-TTGSSDR----TVKLWDLNMRAAMQSMTNHTDQVWGVSFRPL  296 (315)
Q Consensus       225 --i~~wd~~~~~~~~~~~~~~~~i~~-~~~~~~~~~l-~s~~~d~----~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~  296 (315)
                        |.+++..++... .+....-.|.. +.++++++.| .++..+.    .+..-+++.+..++.++.....-..+.|||+
T Consensus       260 ~hly~~~~~~~~~~-~lT~G~~~V~~i~~~d~~~~~iyf~a~~~~p~~r~lY~v~~~~~~~~~~LT~~~~~~~~~~~Spd  338 (353)
T PF00930_consen  260 RHLYLYDLDGGKPR-QLTSGDWEVTSILGWDEDNNRIYFTANGDNPGERHLYRVSLDSGGEPKCLTCEDGDHYSASFSPD  338 (353)
T ss_dssp             EEEEEEETTSSEEE-ESS-SSS-EEEEEEEECTSSEEEEEESSGGTTSBEEEEEETTETTEEEESSTTSSTTEEEEE-TT
T ss_pred             cEEEEEccccccee-ccccCceeecccceEcCCCCEEEEEecCCCCCceEEEEEEeCCCCCeEeccCCCCCceEEEECCC
Confidence              555666666533 55544455644 5678876644 5665532    4555566622334444433322268999999


Q ss_pred             CCEEEEE
Q 021247          297 GGRVVSV  303 (315)
Q Consensus       297 ~~~l~s~  303 (315)
                      |++++-.
T Consensus       339 g~y~v~~  345 (353)
T PF00930_consen  339 GKYYVDT  345 (353)
T ss_dssp             SSEEEEE
T ss_pred             CCEEEEE
Confidence            9988643

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....

>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.50  E-value=4.4e-05  Score=68.09  Aligned_cols=181  Identities=17%  Similarity=0.184  Sum_probs=121.1

Q ss_pred             ceEEEEeCCCCCEEEEeeCCCeEEEEECCCCceeEEeeCCcccEEEEEECCCCCeEEEEecCCCeEEEEecCCcceeeee
Q 021247           62 GVVSVAAHPSGIIAASASLDSFVRVFDVDTNASIATLEASPSEVWQMQFDPKGTTLAVAGGGSASVKLWDTATWNLIATL  141 (315)
Q Consensus        62 ~v~~~~~~~~g~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~  141 (315)
                      .+.++.++  +..++-|.-+|.+++.+.....  .+...|...      +..|.++ ++|+.||.|.+-.+-+.+...++
T Consensus        41 ~is~~av~--~~~~~~GtH~g~v~~~~~~~~~--~~~~~~s~~------~~~Gey~-asCS~DGkv~I~sl~~~~~~~~~  109 (846)
T KOG2066|consen   41 AISCCAVH--DKFFALGTHRGAVYLTTCQGNP--KTNFDHSSS------ILEGEYV-ASCSDDGKVVIGSLFTDDEITQY  109 (846)
T ss_pred             HHHHHHhh--cceeeeccccceEEEEecCCcc--ccccccccc------ccCCceE-EEecCCCcEEEeeccCCccceeE
Confidence            44444443  4578888899999999876553  222223222      4567765 78999999999988776666555


Q ss_pred             cCCCCCCCCCCccCCCCcceEEEEECCC-----CCEEEEecCCCcEEEEEccccee--eeeecCCccceEEEEEcCCCCc
Q 021247          142 SIPRPEGLKPTDKSSSKKFVLSVAWSPD-----GRRIACGSMDGTISVFDVTRAKF--LHHLEGHFMPVRSLVYSPVDPR  214 (315)
Q Consensus       142 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~-----~~~l~~~s~dg~i~i~d~~~~~~--~~~~~~~~~~v~~~~~~~~~~~  214 (315)
                      .+.+              ++.+++++|+     .+.+++|+..| +.++.-.-...  ...+....++|.++.|.   +.
T Consensus       110 df~r--------------piksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgnk~~v~l~~~eG~I~~i~W~---g~  171 (846)
T KOG2066|consen  110 DFKR--------------PIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWLGNKDSVVLSEGEGPIHSIKWR---GN  171 (846)
T ss_pred             ecCC--------------cceeEEeccchhhhhhhheeecCcce-EEEehhhhhcCccceeeecCccceEEEEec---Cc
Confidence            4433              3789999997     57899999988 87776432211  11344557899999996   45


Q ss_pred             EEEEEeCCCeEEEEeCCCCeeEEEeeccc------ccEEEEEEcCCCCeEEEEeCCCcEEEEecCc
Q 021247          215 VLFSASDDTHVHMYDAEGKSLVTAMSGHA------SWVLSVDASPDGAAITTGSSDRTVKLWDLNM  274 (315)
Q Consensus       215 ~l~s~~~d~~i~~wd~~~~~~~~~~~~~~------~~i~~~~~~~~~~~l~s~~~d~~i~iwd~~~  274 (315)
                      +++=+.++| +++||...++.+..+....      .....+.|.++.+ |+. |..-+|+|..++.
T Consensus       172 lIAWand~G-v~vyd~~~~~~l~~i~~p~~~~R~e~fpphl~W~~~~~-LVI-GW~d~v~i~~I~~  234 (846)
T KOG2066|consen  172 LIAWANDDG-VKVYDTPTRQRLTNIPPPSQSVRPELFPPHLHWQDEDR-LVI-GWGDSVKICSIKK  234 (846)
T ss_pred             EEEEecCCC-cEEEeccccceeeccCCCCCCCCcccCCCceEecCCCe-EEE-ecCCeEEEEEEec
Confidence            777777776 9999998876665443211      1234577877654 444 4555789988873

>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases

Probab=98.49  E-value=0.00068  Score=60.38  Aligned_cols=276  Identities=13%  Similarity=0.131  Sum_probs=147.8

Q ss_pred             cEEEEeeCCCcEEEEcCCCCcceeecccccc------ceEE--EEeCCCCCEEEEeeCCCeEEEEECCCCceeEEeeCCc
Q 021247           31 ALLLTGSLDETVKLWRPDDMQLERTNTGHCL------GVVS--VAAHPSGIIAASASLDSFVRVFDVDTNASIATLEASP  102 (315)
Q Consensus        31 ~~l~sgs~d~~v~~w~~~~~~~~~~~~~h~~------~v~~--~~~~~~g~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~  102 (315)
                      ..++.++.++.|.-.|..+++..........      .+..  +... ++..++.++.++.|+-+|.++++.+.......
T Consensus        62 g~vy~~~~~g~l~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~g~~~~-~~~~V~v~~~~g~v~AlD~~TG~~~W~~~~~~  140 (488)
T cd00216          62 GDMYFTTSHSALFALDAATGKVLWRYDPKLPADRGCCDVVNRGVAYW-DPRKVFFGTFDGRLVALDAETGKQVWKFGNND  140 (488)
T ss_pred             CEEEEeCCCCcEEEEECCCChhhceeCCCCCccccccccccCCcEEc-cCCeEEEecCCCeEEEEECCCCCEeeeecCCC
Confidence            3567888899999999888776554322111      1110  1111 22566677889999999999999887765433


Q ss_pred             cc-----EE-EEEECCCCCeEEEEe--------cCCCeEEEEecCCcceeeeecCCCCCCCCCCcc-CC------CCcce
Q 021247          103 SE-----VW-QMQFDPKGTTLAVAG--------GGSASVKLWDTATWNLIATLSIPRPEGLKPTDK-SS------SKKFV  161 (315)
Q Consensus       103 ~~-----v~-~~~~~~~~~~~~~~~--------~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~-~~------~~~~i  161 (315)
                      ..     +. ...+.  +..+++..        +.++.+..+|..+++.+..+....+........ ..      ....+
T Consensus       141 ~~~~~~~i~ssP~v~--~~~v~vg~~~~~~~~~~~~g~v~alD~~TG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~g~~v  218 (488)
T cd00216         141 QVPPGYTMTGAPTIV--KKLVIIGSSGAEFFACGVRGALRAYDVETGKLLWRFYTTEPDPNAFPTWGPDRQMWGPGGGTS  218 (488)
T ss_pred             CcCcceEecCCCEEE--CCEEEEeccccccccCCCCcEEEEEECCCCceeeEeeccCCCcCCCCCCCCCcceecCCCCCc
Confidence            21     11 11111  12233322        236789999999999988876532211100000 00      00001


Q ss_pred             -EEEEECCCCCEEEEecCCC------------------cEEEEEcccceeeeeec--CCcc----ceEEEEEc---CCCC
Q 021247          162 -LSVAWSPDGRRIACGSMDG------------------TISVFDVTRAKFLHHLE--GHFM----PVRSLVYS---PVDP  213 (315)
Q Consensus       162 -~~~~~~~~~~~l~~~s~dg------------------~i~i~d~~~~~~~~~~~--~~~~----~v~~~~~~---~~~~  213 (315)
                       ...++.+.+..++.++.++                  .+.-+|+.+++..=...  .|..    ......+.   +.++
T Consensus       219 w~~pa~d~~~g~V~vg~~~g~~~~~~~~~~~~~~~~~~~l~Ald~~tG~~~W~~~~~~~~~~~~~~~s~p~~~~~~~~~g  298 (488)
T cd00216         219 WASPTYDPKTNLVYVGTGNGSPWNWGGRRTPGDNLYTDSIVALDADTGKVKWFYQTTPHDLWDYDGPNQPSLADIKPKDG  298 (488)
T ss_pred             cCCeeEeCCCCEEEEECCCCCCCccCCccCCCCCCceeeEEEEcCCCCCEEEEeeCCCCCCcccccCCCCeEEeccccCC
Confidence             1344555567777776655                  79999999888754432  1110    00000111   1122


Q ss_pred             ---cEEEEEeCCCeEEEEeCCCCeeEEEeecccccEEEEEEcCCCCeEEEE------------------eCCCcEEEEec
Q 021247          214 ---RVLFSASDDTHVHMYDAEGKSLVTAMSGHASWVLSVDASPDGAAITTG------------------SSDRTVKLWDL  272 (315)
Q Consensus       214 ---~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~------------------~~d~~i~iwd~  272 (315)
                         ..++.++.+|.+...|.++++.+=.....   ...+..+| + .+..+                  ..+|.+.-.|+
T Consensus       299 ~~~~~V~~g~~~G~l~ald~~tG~~~W~~~~~---~~~~~~~~-~-~vyv~~~~~~~~~~~~~~~~~~~~~~G~l~AlD~  373 (488)
T cd00216         299 KPVPAIVHAPKNGFFYVLDRTTGKLISARPEV---EQPMAYDP-G-LVYLGAFHIPLGLPPQKKKRCKKPGKGGLAALDP  373 (488)
T ss_pred             CeeEEEEEECCCceEEEEECCCCcEeeEeEee---ccccccCC-c-eEEEccccccccCcccccCCCCCCCceEEEEEeC
Confidence               25778888999999999988765432210   01123333 2 22221                  23567777777


Q ss_pred             Cccceehccccc--c------cceEEEEEeeCCCEEEEEeCCCcEEEeec
Q 021247          273 NMRAAMQSMTNH--T------DQVWGVSFRPLGGRVVSVSDDKSISLYEY  314 (315)
Q Consensus       273 ~~~~~~~~~~~~--~------~~v~~~~~s~~~~~l~s~~~d~~i~i~~~  314 (315)
                      .+++.+=+....  .      .+...-.....+..|+.++.||.++-+|-
T Consensus       374 ~tG~~~W~~~~~~~~~~~~~g~~~~~~~~~~~g~~v~~g~~dG~l~ald~  423 (488)
T cd00216         374 KTGKVVWEKREGTIRDSWNIGFPHWGGSLATAGNLVFAGAADGYFRAFDA  423 (488)
T ss_pred             CCCcEeeEeeCCccccccccCCcccCcceEecCCeEEEECCCCeEEEEEC
Confidence            776543211111  0      11111111224568888889999887764

The alignment model contains an 8-bladed beta-propeller.

>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.48  E-value=3.4e-05  Score=69.27  Aligned_cols=199  Identities=15%  Similarity=0.212  Sum_probs=124.0

Q ss_pred             cEEEEeeCCCcEEEEcCCCCcceeeccccccc-eEEEEeCCCCCEEEEeeCCCe-----EEEEECCCC------cee---
Q 021247           31 ALLLTGSLDETVKLWRPDDMQLERTNTGHCLG-VVSVAAHPSGIIAASASLDSF-----VRVFDVDTN------ASI---   95 (315)
Q Consensus        31 ~~l~sgs~d~~v~~w~~~~~~~~~~~~~h~~~-v~~~~~~~~g~~l~s~~~d~~-----i~~w~~~~~------~~~---   95 (315)
                      ..++.|+.||.|.+.+. ..++.+.+..+... |..+.....-.+|++.+.|+.     +++|+++.-      .+.   
T Consensus        36 ~~vvigt~~G~V~~Ln~-s~~~~~~fqa~~~siv~~L~~~~~~~~L~sv~Ed~~~np~llkiw~lek~~~n~sP~c~~~~  114 (933)
T KOG2114|consen   36 GSVVIGTADGRVVILNS-SFQLIRGFQAYEQSIVQFLYILNKQNFLFSVGEDEQGNPVLLKIWDLEKVDKNNSPQCLYEH  114 (933)
T ss_pred             ceEEEeeccccEEEecc-cceeeehheecchhhhhHhhcccCceEEEEEeecCCCCceEEEEecccccCCCCCcceeeee
Confidence            36999999999999864 33343455555555 666666666678888877754     999998753      222   


Q ss_pred             EEee----CCcccEEEEEECCCCCeEEEEecCCCeEEEEecCCcceeeeecCCCCCCCCCCccCCCCcceEEEEECCCCC
Q 021247           96 ATLE----ASPSEVWQMQFDPKGTTLAVAGGGSASVKLWDTATWNLIATLSIPRPEGLKPTDKSSSKKFVLSVAWSPDGR  171 (315)
Q Consensus        96 ~~~~----~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~  171 (315)
                      ..+.    ..+.++..++.+.+-+ .++.|-.+|.|.++.-.-   .+.      .+.+..-....+.+|+++++..++.
T Consensus       115 ri~~~~np~~~~p~s~l~Vs~~l~-~Iv~Gf~nG~V~~~~GDi---~RD------rgsr~~~~~~~~~pITgL~~~~d~~  184 (933)
T KOG2114|consen  115 RIFTIKNPTNPSPASSLAVSEDLK-TIVCGFTNGLVICYKGDI---LRD------RGSRQDYSHRGKEPITGLALRSDGK  184 (933)
T ss_pred             eeeccCCCCCCCcceEEEEEcccc-EEEEEecCcEEEEEcCcc---hhc------cccceeeeccCCCCceeeEEecCCc
Confidence            1111    1245677888887644 557788899998885321   110      0111111223456799999999887


Q ss_pred             E-EEEecCCCcEEEEEccccee-eeeecCCccceEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCeeEEEee-ccc
Q 021247          172 R-IACGSMDGTISVFDVTRAKF-LHHLEGHFMPVRSLVYSPVDPRVLFSASDDTHVHMYDAEGKSLVTAMS-GHA  243 (315)
Q Consensus       172 ~-l~~~s~dg~i~i~d~~~~~~-~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~-~~~  243 (315)
                      . +++.+ -..|.+|.+....+ ...+..|..+.+|..+++..++ ++.++ +..+.+|+..+...--.+. +|.
T Consensus       185 s~lFv~T-t~~V~~y~l~gr~p~~~~ld~~G~~lnCss~~~~t~q-fIca~-~e~l~fY~sd~~~~cfaf~~g~k  256 (933)
T KOG2114|consen  185 SVLFVAT-TEQVMLYSLSGRTPSLKVLDNNGISLNCSSFSDGTYQ-FICAG-SEFLYFYDSDGRGPCFAFEVGEK  256 (933)
T ss_pred             eeEEEEe-cceeEEEEecCCCcceeeeccCCccceeeecCCCCcc-EEEec-CceEEEEcCCCcceeeeecCCCe
Confidence            6 33333 34789999873332 3446677788999999874433 44443 3469999987654433333 443

>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]

Probab=98.48  E-value=1.3e-07  Score=84.55  Aligned_cols=224  Identities=16%  Similarity=0.199  Sum_probs=143.5

Q ss_pred             cchhhhh--hccccceEEEEEeecCCCCCcEEEEeeCCCcEEEEcCCCCcceeeccccccceEEEEeCCCCCEEEEee-C
Q 021247            4 AGLKSVE--NAHEESVWAVTWVPATETRPALLLTGSLDETVKLWRPDDMQLERTNTGHCLGVVSVAAHPSGIIAASAS-L   80 (315)
Q Consensus         4 ~~~~~~~--~~h~~~v~~v~~~~~~~~~~~~l~sgs~d~~v~~w~~~~~~~~~~~~~h~~~v~~~~~~~~g~~l~s~~-~   80 (315)
                      ++|+++.  +.|+..-+|++|+-..+    .|+.|+..|.|++++...+.......+|..+|+-+..+.+|.+.++.+ +
T Consensus      1089 SRFr~w~~frd~~~~fTc~afs~~~~----hL~vG~~~Geik~~nv~sG~~e~s~ncH~SavT~vePs~dgs~~Ltsss~ 1164 (1516)
T KOG1832|consen 1089 SRFRSWRSFRDETALFTCIAFSGGTN----HLAVGSHAGEIKIFNVSSGSMEESVNCHQSAVTLVEPSVDGSTQLTSSSS 1164 (1516)
T ss_pred             hhcccchhhhccccceeeEEeecCCc----eEEeeeccceEEEEEccCccccccccccccccccccccCCcceeeeeccc
Confidence            3444443  57788999999997665    599999999999999999999999999999999999999997666443 3


Q ss_pred             CC-eEEEEECCCC-ceeEEeeCCcccEEEEEECCCCCeEEEEecCCCeEEEEecCCcceeeeecCCCCCCCCCCccCCCC
Q 021247           81 DS-FVRVFDVDTN-ASIATLEASPSEVWQMQFDPKGTTLAVAGGGSASVKLWDTATWNLIATLSIPRPEGLKPTDKSSSK  158 (315)
Q Consensus        81 d~-~i~~w~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~  158 (315)
                      .. -..+|+.... ....++    ..-.++.|+.... ..+.|.......+||+.++..+.++-.+.-         ...
T Consensus      1165 S~PlsaLW~~~s~~~~~Hsf----~ed~~vkFsn~~q-~r~~gt~~d~a~~YDvqT~~~l~tylt~~~---------~~~ 1230 (1516)
T KOG1832|consen 1165 SSPLSALWDASSTGGPRHSF----DEDKAVKFSNSLQ-FRALGTEADDALLYDVQTCSPLQTYLTDTV---------TSS 1230 (1516)
T ss_pred             cCchHHHhccccccCccccc----cccceeehhhhHH-HHHhcccccceEEEecccCcHHHHhcCcch---------hhh
Confidence            33 4678998652 223333    2344667776533 223344446788999998877655422111         111


Q ss_pred             cceEEEEECCCCCEEEEecCCCcEEEEEcccceeeeeecCCccceEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCeeEEE
Q 021247          159 KFVLSVAWSPDGRRIACGSMDGTISVFDVTRAKFLHHLEGHFMPVRSLVYSPVDPRVLFSASDDTHVHMYDAEGKSLVTA  238 (315)
Q Consensus       159 ~~i~~~~~~~~~~~l~~~s~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~  238 (315)
                      ..-+...|+|+..+++   +||  .+||++..+.+..+..-+.. ..-.|+|.+.+.++-      --|||+++..+++.
T Consensus      1231 y~~n~a~FsP~D~LIl---ndG--vLWDvR~~~aIh~FD~ft~~-~~G~FHP~g~eVIIN------SEIwD~RTF~lLh~ 1298 (1516)
T KOG1832|consen 1231 YSNNLAHFSPCDTLIL---NDG--VLWDVRIPEAIHRFDQFTDY-GGGGFHPSGNEVIIN------SEIWDMRTFKLLHS 1298 (1516)
T ss_pred             hhccccccCCCcceEe---eCc--eeeeeccHHHHhhhhhheec-ccccccCCCceEEee------chhhhhHHHHHHhc
Confidence            1125778999888877   555  46999877655544322211 123578855444432      24899998776644


Q ss_pred             eecccccEEEEEEcCCCCeEE
Q 021247          239 MSGHASWVLSVDASPDGAAIT  259 (315)
Q Consensus       239 ~~~~~~~i~~~~~~~~~~~l~  259 (315)
                      ...-.  =..+.|+..|..+.
T Consensus      1299 VP~Ld--qc~VtFNstG~VmY 1317 (1516)
T KOG1832|consen 1299 VPSLD--QCAVTFNSTGDVMY 1317 (1516)
T ss_pred             Ccccc--ceEEEeccCccchh
Confidence            32211  12456766665443

>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]

Probab=98.43  E-value=0.00042  Score=54.10  Aligned_cols=68  Identities=12%  Similarity=-0.001  Sum_probs=46.9

Q ss_pred             cEEEEeeCCCcEEEEcCCCCcceeeccccccce-EEEEeCCCCCEEEEeeCCCeEEEEECCCCceeEEee
Q 021247           31 ALLLTGSLDETVKLWRPDDMQLERTNTGHCLGV-VSVAAHPSGIIAASASLDSFVRVFDVDTNASIATLE   99 (315)
Q Consensus        31 ~~l~sgs~d~~v~~w~~~~~~~~~~~~~h~~~v-~~~~~~~~g~~l~s~~~d~~i~~w~~~~~~~~~~~~   99 (315)
                      ..++.|+..|.+++.+..++.....+..- +.| ......+++.++.+++.|++.+..|..+..++...+
T Consensus        64 dfVV~GCy~g~lYfl~~~tGs~~w~f~~~-~~vk~~a~~d~~~glIycgshd~~~yalD~~~~~cVyksk  132 (354)
T KOG4649|consen   64 DFVVLGCYSGGLYFLCVKTGSQIWNFVIL-ETVKVRAQCDFDGGLIYCGSHDGNFYALDPKTYGCVYKSK  132 (354)
T ss_pred             CEEEEEEccCcEEEEEecchhheeeeeeh-hhhccceEEcCCCceEEEecCCCcEEEecccccceEEecc
Confidence            35777888888888887776544333211 111 223456789999999999999999998877765543

>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=98.41  E-value=2.9e-06  Score=70.49  Aligned_cols=189  Identities=15%  Similarity=0.165  Sum_probs=126.7

Q ss_pred             CeEEEEecCCCeEEEEecCCcceeeeecCCCCCCCCCCccCCCCcceEEEEECCCCCEEEEecC-CCcEEEEEcccceee
Q 021247          115 TTLAVAGGGSASVKLWDTATWNLIATLSIPRPEGLKPTDKSSSKKFVLSVAWSPDGRRIACGSM-DGTISVFDVTRAKFL  193 (315)
Q Consensus       115 ~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~s~-dg~i~i~d~~~~~~~  193 (315)
                      ..++.+++.||.++.|--..-.-+.-          ......|...|.+++.+-++..+.+... |..++++|++.-..+
T Consensus        20 a~fiiqASlDGh~KFWkKs~isGvEf----------VKhFraHL~~I~sl~~S~dg~L~~Sv~d~Dhs~KvfDvEn~Dmi   89 (558)
T KOG0882|consen   20 AKFIIQASLDGHKKFWKKSRISGVEF----------VKHFRAHLGVILSLAVSYDGWLFRSVEDPDHSVKVFDVENFDMI   89 (558)
T ss_pred             hheEEeeecchhhhhcCCCCccceee----------hhhhHHHHHHHHhhhccccceeEeeccCcccceeEEEeeccchh
Confidence            34667889999999996432111100          0111234455778888889988888777 999999999766554


Q ss_pred             eeecCCccceEEEEE--cCCCC--cEEEEEeCCCeEEEEeCCCCe--eEEEeecccccEEEEEEcCCCCeEEEEeCCCcE
Q 021247          194 HHLEGHFMPVRSLVY--SPVDP--RVLFSASDDTHVHMYDAEGKS--LVTAMSGHASWVLSVDASPDGAAITTGSSDRTV  267 (315)
Q Consensus       194 ~~~~~~~~~v~~~~~--~~~~~--~~l~s~~~d~~i~~wd~~~~~--~~~~~~~~~~~i~~~~~~~~~~~l~s~~~d~~i  267 (315)
                      .-++...- ...+.|  +|.+.  .+.++.-.++.+.++|.....  ....-.-|..+|..+.+++-+..+++....|.|
T Consensus        90 nmiKL~~l-Pg~a~wv~skGd~~s~IAVs~~~sg~i~VvD~~~d~~q~~~fkklH~sPV~~i~y~qa~Ds~vSiD~~gmV  168 (558)
T KOG0882|consen   90 NMIKLVDL-PGFAEWVTSKGDKISLIAVSLFKSGKIFVVDGFGDFCQDGYFKKLHFSPVKKIRYNQAGDSAVSIDISGMV  168 (558)
T ss_pred             hhcccccC-CCceEEecCCCCeeeeEEeecccCCCcEEECCcCCcCccceecccccCceEEEEeeccccceeecccccee
Confidence            33332111 122223  33222  233444568999999987543  333445689999999999999999999999999


Q ss_pred             EEEecCc------cce---------ehcccccccceEEEEEeeCCCEEEEEeCCCcEEEeec
Q 021247          268 KLWDLNM------RAA---------MQSMTNHTDQVWGVSFRPLGGRVVSVSDDKSISLYEY  314 (315)
Q Consensus       268 ~iwd~~~------~~~---------~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~i~i~~~  314 (315)
                      ..|....      .+.         +..+........++.|+|+|..+.+.+.|.+|++|.+
T Consensus       169 EyWs~e~~~qfPr~~l~~~~K~eTdLy~f~K~Kt~pts~Efsp~g~qistl~~DrkVR~F~~  230 (558)
T KOG0882|consen  169 EYWSAEGPFQFPRTNLNFELKHETDLYGFPKAKTEPTSFEFSPDGAQISTLNPDRKVRGFVF  230 (558)
T ss_pred             EeecCCCcccCccccccccccccchhhcccccccCccceEEccccCcccccCcccEEEEEEe
Confidence            9998762      111         1112223346779999999999999999999999975

>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]

Probab=98.40  E-value=2.1e-05  Score=70.68  Aligned_cols=112  Identities=21%  Similarity=0.366  Sum_probs=83.9

Q ss_pred             cceEEE-EEeecCCCCCcEEEEeeC----CCcEEEEcCCCCcceeeccccccceEEEEeCCCCCEEEEeeCCCeEEEEEC
Q 021247           15 ESVWAV-TWVPATETRPALLLTGSL----DETVKLWRPDDMQLERTNTGHCLGVVSVAAHPSGIIAASASLDSFVRVFDV   89 (315)
Q Consensus        15 ~~v~~v-~~~~~~~~~~~~l~sgs~----d~~v~~w~~~~~~~~~~~~~h~~~v~~~~~~~~g~~l~s~~~d~~i~~w~~   89 (315)
                      +.|..+ +|.|..+    +++.++.    .|+|.||- ++++..+... ..-.+.+++|||....|+.|-.-|.+.+|..
T Consensus        15 davsti~SWHPseP----lfAVA~fS~er~GSVtIfa-dtGEPqr~Vt-~P~hatSLCWHpe~~vLa~gwe~g~~~v~~~   88 (1416)
T KOG3617|consen   15 DAVSTISSWHPSEP----LFAVASFSPERGGSVTIFA-DTGEPQRDVT-YPVHATSLCWHPEEFVLAQGWEMGVSDVQKT   88 (1416)
T ss_pred             cccccccccCCCCc----eeEEEEecCCCCceEEEEe-cCCCCCcccc-cceehhhhccChHHHHHhhccccceeEEEec
Confidence            344444 4888765    6777764    58899984 3444322111 1123567999999999999999999999999


Q ss_pred             CCCceeEEeeCCcccEEEEEECCCCCeEEEEecCCCeEEEEecC
Q 021247           90 DTNASIATLEASPSEVWQMQFDPKGTTLAVAGGGSASVKLWDTA  133 (315)
Q Consensus        90 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~~d~~  133 (315)
                      .+.+.-.....|+.++..+.|+|+|+.+ +++..-|.+.+|...
T Consensus        89 ~~~e~htv~~th~a~i~~l~wS~~G~~l-~t~d~~g~v~lwr~d  131 (1416)
T KOG3617|consen   89 NTTETHTVVETHPAPIQGLDWSHDGTVL-MTLDNPGSVHLWRYD  131 (1416)
T ss_pred             CCceeeeeccCCCCCceeEEecCCCCeE-EEcCCCceeEEEEee
Confidence            8877767778899999999999999855 678888999999765

>PRK02888 nitrous-oxide reductase; Validated

Probab=98.39  E-value=0.0001  Score=65.33  Aligned_cols=187  Identities=13%  Similarity=0.067  Sum_probs=113.7

Q ss_pred             EEeCCCCCEEE-EeeCCCeEEEEECCCCceeEEeeCCcccEEEEEECCCCCeEEEEec---CCCeEEEEecCCcceeeee
Q 021247           66 VAAHPSGIIAA-SASLDSFVRVFDVDTNASIATLEASPSEVWQMQFDPKGTTLAVAGG---GSASVKLWDTATWNLIATL  141 (315)
Q Consensus        66 ~~~~~~g~~l~-s~~~d~~i~~w~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~---~d~~i~~~d~~~~~~~~~~  141 (315)
                      +-+.|+|..+. ..-..+.+.+.|..+.+...++.... ....++++|+++++++++.   ...++...+.........+
T Consensus       198 ~PlpnDGk~l~~~~ey~~~vSvID~etmeV~~qV~Vdg-npd~v~~spdGk~afvTsyNsE~G~tl~em~a~e~d~~vvf  276 (635)
T PRK02888        198 IPLPNDGKDLDDPKKYRSLFTAVDAETMEVAWQVMVDG-NLDNVDTDYDGKYAFSTCYNSEEGVTLAEMMAAERDWVVVF  276 (635)
T ss_pred             cccCCCCCEeecccceeEEEEEEECccceEEEEEEeCC-CcccceECCCCCEEEEeccCcccCcceeeeccccCceEEEE
Confidence            33456675443 23334567777877766655554433 3356688899988777652   1223333333222222222


Q ss_pred             cCCCCCCCCCCccCCCCcceEEEEECCCCCEEEEecCCCcEEEEEccc-----ceeeeeecCCccceEEEEEcCCCCcEE
Q 021247          142 SIPRPEGLKPTDKSSSKKFVLSVAWSPDGRRIACGSMDGTISVFDVTR-----AKFLHHLEGHFMPVRSLVYSPVDPRVL  216 (315)
Q Consensus       142 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~s~dg~i~i~d~~~-----~~~~~~~~~~~~~v~~~~~~~~~~~~l  216 (315)
                      ....                 ...+.++|++...  .++.|.+.|.++     ...+..+... .....+.++|++..++
T Consensus       277 ni~~-----------------iea~vkdGK~~~V--~gn~V~VID~~t~~~~~~~v~~yIPVG-KsPHGV~vSPDGkyly  336 (635)
T PRK02888        277 NIAR-----------------IEEAVKAGKFKTI--GGSKVPVVDGRKAANAGSALTRYVPVP-KNPHGVNTSPDGKYFI  336 (635)
T ss_pred             chHH-----------------HHHhhhCCCEEEE--CCCEEEEEECCccccCCcceEEEEECC-CCccceEECCCCCEEE
Confidence            1110                 0123356776655  357899999987     3444444333 3457889999766667


Q ss_pred             EEEeCCCeEEEEeCCCCe------------eEEEeecccccEEEEEEcCCCCeEEEEeCCCcEEEEecCc
Q 021247          217 FSASDDTHVHMYDAEGKS------------LVTAMSGHASWVLSVDASPDGAAITTGSSDRTVKLWDLNM  274 (315)
Q Consensus       217 ~s~~~d~~i~~wd~~~~~------------~~~~~~~~~~~i~~~~~~~~~~~l~s~~~d~~i~iwd~~~  274 (315)
                      +++..+.++.++|.+..+            ++.+..- .......+|+++|....|---|..|-.|++..
T Consensus       337 VanklS~tVSVIDv~k~k~~~~~~~~~~~~vvaevev-GlGPLHTaFDg~G~aytslf~dsqv~kwn~~~  405 (635)
T PRK02888        337 ANGKLSPTVTVIDVRKLDDLFDGKIKPRDAVVAEPEL-GLGPLHTAFDGRGNAYTTLFLDSQIVKWNIEA  405 (635)
T ss_pred             EeCCCCCcEEEEEChhhhhhhhccCCccceEEEeecc-CCCcceEEECCCCCEEEeEeecceeEEEehHH
Confidence            777789999999987643            2333322 23345688999998888888899999999875

>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]

Probab=98.36  E-value=0.00063  Score=53.15  Aligned_cols=109  Identities=17%  Similarity=0.138  Sum_probs=74.7

Q ss_pred             CcEEEEeeCCCcEEEEcCCCCcceeecc-ccccceEEEEeCCCCCEEEEeeCCCeEEEEECCCCceeEEeeCCcccEEEE
Q 021247           30 PALLLTGSLDETVKLWRPDDMQLERTNT-GHCLGVVSVAAHPSGIIAASASLDSFVRVFDVDTNASIATLEASPSEVWQM  108 (315)
Q Consensus        30 ~~~l~sgs~d~~v~~w~~~~~~~~~~~~-~h~~~v~~~~~~~~g~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~v~~~  108 (315)
                      ..+++.||..+.++--|+..+++..+.. +-.-....+-   -|.+++.|...|.+++.+.+++.....+..-..--...
T Consensus        23 kT~v~igSHs~~~~avd~~sG~~~We~ilg~RiE~sa~v---vgdfVV~GCy~g~lYfl~~~tGs~~w~f~~~~~vk~~a   99 (354)
T KOG4649|consen   23 KTLVVIGSHSGIVIAVDPQSGNLIWEAILGVRIECSAIV---VGDFVVLGCYSGGLYFLCVKTGSQIWNFVILETVKVRA   99 (354)
T ss_pred             ceEEEEecCCceEEEecCCCCcEEeehhhCceeeeeeEE---ECCEEEEEEccCcEEEEEecchhheeeeeehhhhccce
Confidence            4589999999999999998887765421 1111111111   46778999999999999999997665554322211233


Q ss_pred             EECCCCCeEEEEecCCCeEEEEecCCcceeeeec
Q 021247          109 QFDPKGTTLAVAGGGSASVKLWDTATWNLIATLS  142 (315)
Q Consensus       109 ~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~  142 (315)
                      ...+++. ++..|+.|+.....|.++...+.+..
T Consensus       100 ~~d~~~g-lIycgshd~~~yalD~~~~~cVyksk  132 (354)
T KOG4649|consen  100 QCDFDGG-LIYCGSHDGNFYALDPKTYGCVYKSK  132 (354)
T ss_pred             EEcCCCc-eEEEecCCCcEEEecccccceEEecc
Confidence            4556666 45678999999999999877766543

>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals

Probab=98.36  E-value=0.00025  Score=60.72  Aligned_cols=271  Identities=15%  Similarity=0.146  Sum_probs=132.0

Q ss_pred             ceEEEEEeecCCCCCcEEEEeeCCCcEEEEcCCCCcceeeccccccceEEEEeCCCCCEEEEeeCCCeEEEEECCC----
Q 021247           16 SVWAVTWVPATETRPALLLTGSLDETVKLWRPDDMQLERTNTGHCLGVVSVAAHPSGIIAASASLDSFVRVFDVDT----   91 (315)
Q Consensus        16 ~v~~v~~~~~~~~~~~~l~sgs~d~~v~~w~~~~~~~~~~~~~h~~~v~~~~~~~~g~~l~s~~~d~~i~~w~~~~----   91 (315)
                      .|+.+.|.+..-    -|+.|-..|.|.+|.....+....  ....+-....+.+-+      ..++.-.+-|+..    
T Consensus         3 ~v~~vs~a~~t~----Elav~~~~GeVv~~k~~~n~~~~~--~~~~~~~~~~~~~~~------~~~~~~~l~di~~r~~~   70 (395)
T PF08596_consen    3 SVTHVSFAPETL----ELAVGLESGEVVLFKFGKNQNYGN--REQPPDLDYNFRRFS------LNNSPGKLTDISDRAPP   70 (395)
T ss_dssp             -EEEEEEETTTT----EEEEEETTS-EEEEEEEE--------------------S--------GGGSS-SEEE-GGG--T
T ss_pred             eEEEEEecCCCc----eEEEEccCCcEEEEEcccCCCCCc--cCCCcccCccccccc------ccCCCcceEEehhhCCc
Confidence            588999998765    499999999999997654332210  000011111111100      0000111112211    


Q ss_pred             ----C-ceeEEeeCCcccEEEEEECCCCCeEEEEecCCCeEEEEecCCcceeeeecCCCCCCCCCCccCCCCcceEEEEE
Q 021247           92 ----N-ASIATLEASPSEVWQMQFDPKGTTLAVAGGGSASVKLWDTATWNLIATLSIPRPEGLKPTDKSSSKKFVLSVAW  166 (315)
Q Consensus        92 ----~-~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~  166 (315)
                          + .+...+....++|.+++.+.-|  +++.|..+|.+.|.|+|....+..-.+...     .........++++.|
T Consensus        71 ~~~~gf~P~~l~~~~~g~vtal~~S~iG--Fvaigy~~G~l~viD~RGPavI~~~~i~~~-----~~~~~~~~~vt~ieF  143 (395)
T PF08596_consen   71 SLKEGFLPLTLLDAKQGPVTALKNSDIG--FVAIGYESGSLVVIDLRGPAVIYNENIRES-----FLSKSSSSYVTSIEF  143 (395)
T ss_dssp             T-SEEEEEEEEE---S-SEEEEEE-BTS--EEEEEETTSEEEEEETTTTEEEEEEEGGG-------T-SS----EEEEEE
T ss_pred             ccccccCchhheeccCCcEeEEecCCCc--EEEEEecCCcEEEEECCCCeEEeecccccc-----ccccccccCeeEEEE
Confidence                1 1233445557889999987544  567788999999999998877776544330     001123345777777


Q ss_pred             C-----CCC---CEEEEecCCCcEEEEEccc---ceee----eeecCCccceEEEE-EcCCC------------------
Q 021247          167 S-----PDG---RRIACGSMDGTISVFDVTR---AKFL----HHLEGHFMPVRSLV-YSPVD------------------  212 (315)
Q Consensus       167 ~-----~~~---~~l~~~s~dg~i~i~d~~~---~~~~----~~~~~~~~~v~~~~-~~~~~------------------  212 (315)
                      .     .|+   -.+++|+..|.+.+|.+..   ++..    .....+..++..+. |....                  
T Consensus       144 ~vm~~~~D~ySSi~L~vGTn~G~v~~fkIlp~~~g~f~v~~~~~~~~~~~~i~~I~~i~~~~G~~a~At~~~~~~l~~g~  223 (395)
T PF08596_consen  144 SVMTLGGDGYSSICLLVGTNSGNVLTFKILPSSNGRFSVQFAGATTNHDSPILSIIPINADTGESALATISAMQGLSKGI  223 (395)
T ss_dssp             EEEE-TTSSSEEEEEEEEETTSEEEEEEEEE-GGG-EEEEEEEEE--SS----EEEEEETTT--B-B-BHHHHHGGGGT-
T ss_pred             EEEecCCCcccceEEEEEeCCCCEEEEEEecCCCCceEEEEeeccccCCCceEEEEEEECCCCCcccCchhHhhccccCC
Confidence            5     233   3688999999999998742   2222    22223445555444 32110                  


Q ss_pred             -CcEEEEEeCCCeEEEEeCCCCeeEEEeecccccEEEEEE-----cCCCCeEEEEeCCCcEEEEecCccceehccccc--
Q 021247          213 -PRVLFSASDDTHVHMYDAEGKSLVTAMSGHASWVLSVDA-----SPDGAAITTGSSDRTVKLWDLNMRAAMQSMTNH--  284 (315)
Q Consensus       213 -~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~i~~~~~-----~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~--  284 (315)
                       -..++....+..++++..-..+..............+.+     ...+..|+.-..+|.|+++.+..-+.+..+.-.  
T Consensus       224 ~i~g~vVvvSe~~irv~~~~~~k~~~K~~~~~~~~~~~~vv~~~~~~~~~~Lv~l~~~G~i~i~SLP~Lkei~~~~l~~~  303 (395)
T PF08596_consen  224 SIPGYVVVVSESDIRVFKPPKSKGAHKSFDDPFLCSSASVVPTISRNGGYCLVCLFNNGSIRIYSLPSLKEIKSVSLPPP  303 (395)
T ss_dssp             ---EEEEEE-SSEEEEE-TT---EEEEE-SS-EEEEEEEEEEEE-EEEEEEEEEEETTSEEEEEETTT--EEEEEE-SS-
T ss_pred             CcCcEEEEEcccceEEEeCCCCcccceeeccccccceEEEEeecccCCceEEEEEECCCcEEEEECCCchHhhcccCCCc
Confidence             012344445667999988766555444332222333344     234567888899999999999876665544332  


Q ss_pred             --ccceEEEEEeeCCCEEEEEeC
Q 021247          285 --TDQVWGVSFRPLGGRVVSVSD  305 (315)
Q Consensus       285 --~~~v~~~~~s~~~~~l~s~~~  305 (315)
                        ...+....++++|..++-.|.
T Consensus       304 ~d~~~~~~ssis~~Gdi~~~~gp  326 (395)
T PF08596_consen  304 LDSRRLSSSSISRNGDIFYWTGP  326 (395)
T ss_dssp             --HHHHTT-EE-TTS-EEEE-SS
T ss_pred             cccccccccEECCCCCEEEEeCc
Confidence              123445677888875554433

The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.

>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.36  E-value=9.1e-05  Score=66.19  Aligned_cols=173  Identities=20%  Similarity=0.205  Sum_probs=112.7

Q ss_pred             EEEEeeCCCcEEEEcCCCCcceeeccccccceEEEEeCCCCCEEEEeeCCCeEEEEECCCCceeEEeeCCcccEEEEEEC
Q 021247           32 LLLTGSLDETVKLWRPDDMQLERTNTGHCLGVVSVAAHPSGIIAASASLDSFVRVFDVDTNASIATLEASPSEVWQMQFD  111 (315)
Q Consensus        32 ~l~sgs~d~~v~~w~~~~~~~~~~~~~h~~~v~~~~~~~~g~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~v~~~~~~  111 (315)
                      .|+-|..+|.|++.+.+...  +....|...      ..+|.++++++.||++.+-.+-+.+....+. ...++.+++++
T Consensus        51 ~~~~GtH~g~v~~~~~~~~~--~~~~~~s~~------~~~Gey~asCS~DGkv~I~sl~~~~~~~~~d-f~rpiksial~  121 (846)
T KOG2066|consen   51 FFALGTHRGAVYLTTCQGNP--KTNFDHSSS------ILEGEYVASCSDDGKVVIGSLFTDDEITQYD-FKRPIKSIALH  121 (846)
T ss_pred             eeeeccccceEEEEecCCcc--ccccccccc------ccCCceEEEecCCCcEEEeeccCCccceeEe-cCCcceeEEec
Confidence            68999999999999865332  333334332      6689999999999999999998887776665 34678899999


Q ss_pred             CC----CCeEEEEecCCCeEEEEecCCcceeeeecCCCCCCCCCCccCCCCcceEEEEECCCCCEEEEecCCCcEEEEEc
Q 021247          112 PK----GTTLAVAGGGSASVKLWDTATWNLIATLSIPRPEGLKPTDKSSSKKFVLSVAWSPDGRRIACGSMDGTISVFDV  187 (315)
Q Consensus       112 ~~----~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~s~dg~i~i~d~  187 (315)
                      |+    ...-+++||..| +.++.-+-..-....           ......++|.++.|.  |+++|=++.+ .|++||+
T Consensus       122 Pd~~~~~sk~fv~GG~ag-lvL~er~wlgnk~~v-----------~l~~~eG~I~~i~W~--g~lIAWand~-Gv~vyd~  186 (846)
T KOG2066|consen  122 PDFSRQQSKQFVSGGMAG-LVLSERNWLGNKDSV-----------VLSEGEGPIHSIKWR--GNLIAWANDD-GVKVYDT  186 (846)
T ss_pred             cchhhhhhhheeecCcce-EEEehhhhhcCccce-----------eeecCccceEEEEec--CcEEEEecCC-CcEEEec
Confidence            97    223456777777 777654321111111           112334569999996  5676666544 5999999


Q ss_pred             ccceeeeeecCCccceE------EEEEcCCCCcEEEEEeCCCeEEEEeCC
Q 021247          188 TRAKFLHHLEGHFMPVR------SLVYSPVDPRVLFSASDDTHVHMYDAE  231 (315)
Q Consensus       188 ~~~~~~~~~~~~~~~v~------~~~~~~~~~~~l~s~~~d~~i~~wd~~  231 (315)
                      .+.+.+..+......++      .+.|.+  ...|+-|- ..+|++..++
T Consensus       187 ~~~~~l~~i~~p~~~~R~e~fpphl~W~~--~~~LVIGW-~d~v~i~~I~  233 (846)
T KOG2066|consen  187 PTRQRLTNIPPPSQSVRPELFPPHLHWQD--EDRLVIGW-GDSVKICSIK  233 (846)
T ss_pred             cccceeeccCCCCCCCCcccCCCceEecC--CCeEEEec-CCeEEEEEEe
Confidence            98887776654333333      345554  23444443 3467777665

>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=98.35  E-value=1.9e-07  Score=80.64  Aligned_cols=200  Identities=20%  Similarity=0.225  Sum_probs=129.0

Q ss_pred             ccceEEEEEeecCCCCCcEEEEeeCCCcEEEEcCCCCcce--eeccccccceEEEEeCCC-CCEEEEe----eCCCeEEE
Q 021247           14 EESVWAVTWVPATETRPALLLTGSLDETVKLWRPDDMQLE--RTNTGHCLGVVSVAAHPS-GIIAASA----SLDSFVRV   86 (315)
Q Consensus        14 ~~~v~~v~~~~~~~~~~~~l~sgs~d~~v~~w~~~~~~~~--~~~~~h~~~v~~~~~~~~-g~~l~s~----~~d~~i~~   86 (315)
                      +..+-|++|.-..+  ..+++.|..+|.|.+-........  ...++|..++++++|++- ...||+|    -.|..+.+
T Consensus        56 tqy~kcva~~y~~d--~cIlavG~atG~I~l~s~r~~hdSs~E~tp~~ar~Ct~lAwneLDtn~LAagldkhrnds~~~I  133 (783)
T KOG1008|consen   56 TQYVKCVASFYGND--RCILAVGSATGNISLLSVRHPHDSSAEVTPGYARPCTSLAWNELDTNHLAAGLDKHRNDSSLKI  133 (783)
T ss_pred             CCCceeehhhcCCc--hhhhhhccccCceEEeecCCcccccceecccccccccccccccccHHHHHhhhhhhcccCCccc
Confidence            45778888775433  458999999999999876543322  335678889999999885 3555554    34567999


Q ss_pred             EECCCCc--eeEE--eeC-CcccEEEEEECCCCCeEEEEecCCCeEEEEecCCcceeeeecCCCCCCCCCCccCCCCcce
Q 021247           87 FDVDTNA--SIAT--LEA-SPSEVWQMQFDPKGTTLAVAGGGSASVKLWDTATWNLIATLSIPRPEGLKPTDKSSSKKFV  161 (315)
Q Consensus        87 w~~~~~~--~~~~--~~~-~~~~v~~~~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i  161 (315)
                      ||+.+.-  +...  +.. ......+++|..+ ..++.+|.....+.++|+|.......              .-....+
T Consensus       134 wdi~s~ltvPke~~~fs~~~l~gqns~cwlrd-~klvlaGm~sr~~~ifdlRqs~~~~~--------------svnTk~v  198 (783)
T KOG1008|consen  134 WDINSLLTVPKESPLFSSSTLDGQNSVCWLRD-TKLVLAGMTSRSVHIFDLRQSLDSVS--------------SVNTKYV  198 (783)
T ss_pred             eecccccCCCccccccccccccCccccccccC-cchhhcccccchhhhhhhhhhhhhhh--------------hhhhhhc
Confidence            9998762  1111  111 2233446777744 44667787788999999984221100              0112235


Q ss_pred             EEEEECC-CCCEEEEecCCCcEEEEEc-ccce-eeeeecCCc----cceEEEEEcCCCCcEEEEEeCC-CeEEEEeCC
Q 021247          162 LSVAWSP-DGRRIACGSMDGTISVFDV-TRAK-FLHHLEGHF----MPVRSLVYSPVDPRVLFSASDD-THVHMYDAE  231 (315)
Q Consensus       162 ~~~~~~~-~~~~l~~~s~dg~i~i~d~-~~~~-~~~~~~~~~----~~v~~~~~~~~~~~~l~s~~~d-~~i~~wd~~  231 (315)
                      ..+.+.| .++++++.. ||.|-+||. +.-+ ++..+...+    ..+..++|.|....++++...| ++|++||+.
T Consensus       199 qG~tVdp~~~nY~cs~~-dg~iAiwD~~rnienpl~~i~~~~N~~~~~l~~~aycPtrtglla~l~RdS~tIrlydi~  275 (783)
T KOG1008|consen  199 QGITVDPFSPNYFCSNS-DGDIAIWDTYRNIENPLQIILRNENKKPKQLFALAYCPTRTGLLAVLSRDSITIRLYDIC  275 (783)
T ss_pred             ccceecCCCCCceeccc-cCceeeccchhhhccHHHHHhhCCCCcccceeeEEeccCCcchhhhhccCcceEEEeccc
Confidence            6777888 677777665 999999993 3221 122221111    2378999999877778777765 789999975

>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []

Probab=98.33  E-value=0.00086  Score=53.48  Aligned_cols=199  Identities=14%  Similarity=0.211  Sum_probs=111.0

Q ss_pred             eeCCcccEEEEEECCCCCeEEEEecCCCeEEEEecCCcceeeeecCCCCCCCCCCccCCCCcceEEEEECCCCCEEEEec
Q 021247           98 LEASPSEVWQMQFDPKGTTLAVAGGGSASVKLWDTATWNLIATLSIPRPEGLKPTDKSSSKKFVLSVAWSPDGRRIACGS  177 (315)
Q Consensus        98 ~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~s  177 (315)
                      +..-...+..++|+|+.+.+++.....+.|.-++. .++.+..+.+....+            .-.+++..++.++++.-
T Consensus        17 l~g~~~e~SGLTy~pd~~tLfaV~d~~~~i~els~-~G~vlr~i~l~g~~D------------~EgI~y~g~~~~vl~~E   83 (248)
T PF06977_consen   17 LPGILDELSGLTYNPDTGTLFAVQDEPGEIYELSL-DGKVLRRIPLDGFGD------------YEGITYLGNGRYVLSEE   83 (248)
T ss_dssp             -TT--S-EEEEEEETTTTEEEEEETTTTEEEEEET-T--EEEEEE-SS-SS------------EEEEEE-STTEEEEEET
T ss_pred             CCCccCCccccEEcCCCCeEEEEECCCCEEEEEcC-CCCEEEEEeCCCCCC------------ceeEEEECCCEEEEEEc
Confidence            33445569999999998888888888999988887 478887776543211            55788877777777665


Q ss_pred             CCCcEEEEEcccce------eeeeec-----CCccceEEEEEcCCCCcEEEEEeCCCeEEEEeCCC---CeeE--EEee-
Q 021247          178 MDGTISVFDVTRAK------FLHHLE-----GHFMPVRSLVYSPVDPRVLFSASDDTHVHMYDAEG---KSLV--TAMS-  240 (315)
Q Consensus       178 ~dg~i~i~d~~~~~------~~~~~~-----~~~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~---~~~~--~~~~-  240 (315)
                      .++.+.++++....      ....+.     .++..+-.++|.|.+.++++ +-...-..+|..+.   ...+  .... 
T Consensus        84 r~~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v-~kE~~P~~l~~~~~~~~~~~~~~~~~~~  162 (248)
T PF06977_consen   84 RDQRLYIFTIDDDTTSLDRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFV-AKERKPKRLYEVNGFPGGFDLFVSDDQD  162 (248)
T ss_dssp             TTTEEEEEEE----TT--EEEEEEEE---S---SS--EEEEEETTTTEEEE-EEESSSEEEEEEESTT-SS--EEEE-HH
T ss_pred             CCCcEEEEEEeccccccchhhceEEecccccCCCcceEEEEEcCCCCEEEE-EeCCCChhhEEEccccCccceeeccccc
Confidence            68899999883211      111121     24556789999996555554 44443344554432   1111  1111 


Q ss_pred             -----cccccEEEEEEcCC-CCeEEEEeCCCcEEEEecCccceehccccc---------ccceEEEEEeeCCCEEEEEeC
Q 021247          241 -----GHASWVLSVDASPD-GAAITTGSSDRTVKLWDLNMRAAMQSMTNH---------TDQVWGVSFRPLGGRVVSVSD  305 (315)
Q Consensus       241 -----~~~~~i~~~~~~~~-~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~---------~~~v~~~~~s~~~~~l~s~~~  305 (315)
                           .....+.++.++|. +++++.......|..+|. .++.+..+.-.         -.+.-+++|.++|+ |..+++
T Consensus       163 ~~~~~~~~~d~S~l~~~p~t~~lliLS~es~~l~~~d~-~G~~~~~~~L~~g~~gl~~~~~QpEGIa~d~~G~-LYIvsE  240 (248)
T PF06977_consen  163 LDDDKLFVRDLSGLSYDPRTGHLLILSDESRLLLELDR-QGRVVSSLSLDRGFHGLSKDIPQPEGIAFDPDGN-LYIVSE  240 (248)
T ss_dssp             HH-HT--SS---EEEEETTTTEEEEEETTTTEEEEE-T-T--EEEEEE-STTGGG-SS---SEEEEEE-TT---EEEEET
T ss_pred             cccccceeccccceEEcCCCCeEEEEECCCCeEEEECC-CCCEEEEEEeCCcccCcccccCCccEEEECCCCC-EEEEcC
Confidence                 12344678889985 567777888888888884 45544433211         14678999999984 666667


Q ss_pred             CCcEEEe
Q 021247          306 DKSISLY  312 (315)
Q Consensus       306 d~~i~i~  312 (315)
                      -....+|
T Consensus       241 pNlfy~f  247 (248)
T PF06977_consen  241 PNLFYRF  247 (248)
T ss_dssp             TTEEEEE
T ss_pred             CceEEEe
Confidence            6665554

Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.

>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]

Probab=98.30  E-value=0.00015  Score=67.69  Aligned_cols=197  Identities=15%  Similarity=0.176  Sum_probs=120.7

Q ss_pred             cccEEEEEECCCCCeEEEEecCCCeEEEEecCCcceeeeecCCCCCCCCCCccCCCCcceEEEEECCCCCEEEEecCCCc
Q 021247          102 PSEVWQMQFDPKGTTLAVAGGGSASVKLWDTATWNLIATLSIPRPEGLKPTDKSSSKKFVLSVAWSPDGRRIACGSMDGT  181 (315)
Q Consensus       102 ~~~v~~~~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~s~dg~  181 (315)
                      .+.|.++.|..+.+.+++ +...|.|.+-|..+......-.              -...|.+++|+||++.++..+..+.
T Consensus        68 d~~i~s~~fl~d~~~i~v-~~~~G~iilvd~et~~~eivg~--------------vd~GI~aaswS~Dee~l~liT~~~t  132 (1265)
T KOG1920|consen   68 DDEIVSVQFLADTNSICV-ITALGDIILVDPETLELEIVGN--------------VDNGISAASWSPDEELLALITGRQT  132 (1265)
T ss_pred             CcceEEEEEecccceEEE-EecCCcEEEEcccccceeeeee--------------ccCceEEEeecCCCcEEEEEeCCcE
Confidence            357888888888776654 4567788887776543221111              1233899999999999998888777


Q ss_pred             EEEEEc----ccc-------------------eeeeeecCCcc---------------------ceEEEEEcCCCCcEEE
Q 021247          182 ISVFDV----TRA-------------------KFLHHLEGHFM---------------------PVRSLVYSPVDPRVLF  217 (315)
Q Consensus       182 i~i~d~----~~~-------------------~~~~~~~~~~~---------------------~v~~~~~~~~~~~~l~  217 (315)
                      +.+.+-    -..                   +.-..+++..+                     .=.++.|-- ++++++
T Consensus       133 ll~mT~~f~~i~E~~L~~d~~~~sk~v~VGwGrkeTqfrgs~gr~~~~~~~~~ek~~~~~~~~~~~~~IsWRg-Dg~~fA  211 (1265)
T KOG1920|consen  133 LLFMTKDFEPIAEKPLDADDERKSKFVNVGWGRKETQFRGSEGRQAARQKIEKEKALEQIEQDDHKTSISWRG-DGEYFA  211 (1265)
T ss_pred             EEEEeccccchhccccccccccccccceecccccceeeecchhhhcccccccccccccchhhccCCceEEEcc-CCcEEE
Confidence            766532    111                   11111221100                     012477875 566766


Q ss_pred             EEe----CC-CeEEEEeCCCCeeEEEeecccccEEEEEEcCCCCeEEEEe---CCCcEEEEecC---ccceehccccccc
Q 021247          218 SAS----DD-THVHMYDAEGKSLVTAMSGHASWVLSVDASPDGAAITTGS---SDRTVKLWDLN---MRAAMQSMTNHTD  286 (315)
Q Consensus       218 s~~----~d-~~i~~wd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~---~d~~i~iwd~~---~~~~~~~~~~~~~  286 (315)
                      ...    .+ ++|++||.+ +.+-..-....+-=.+++|-|.|..+++-.   .|+.|.+|.-+   .++.....+....
T Consensus       212 Vs~~~~~~~~RkirV~drE-g~Lns~se~~~~l~~~LsWkPsgs~iA~iq~~~sd~~IvffErNGL~hg~f~l~~p~de~  290 (1265)
T KOG1920|consen  212 VSFVESETGTRKIRVYDRE-GALNSTSEPVEGLQHSLSWKPSGSLIAAIQCKTSDSDIVFFERNGLRHGEFVLPFPLDEK  290 (1265)
T ss_pred             EEEEeccCCceeEEEeccc-chhhcccCcccccccceeecCCCCeEeeeeecCCCCcEEEEecCCccccccccCCccccc
Confidence            532    23 899999987 322222222222234689999999888753   45679999754   2333333444445


Q ss_pred             ceEEEEEeeCCCEEEE---EeCCCcEEEeecC
Q 021247          287 QVWGVSFRPLGGRVVS---VSDDKSISLYEYS  315 (315)
Q Consensus       287 ~v~~~~~s~~~~~l~s---~~~d~~i~i~~~~  315 (315)
                      ++..++|+.++..|+.   ......|++|-++
T Consensus       291 ~ve~L~Wns~sdiLAv~~~~~e~~~v~lwt~~  322 (1265)
T KOG1920|consen  291 EVEELAWNSNSDILAVVTSNLENSLVQLWTTG  322 (1265)
T ss_pred             chheeeecCCCCceeeeecccccceEEEEEec
Confidence            5899999999988876   4444459999753

>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats

Probab=98.27  E-value=0.00013  Score=63.23  Aligned_cols=71  Identities=24%  Similarity=0.394  Sum_probs=58.7

Q ss_pred             cceEEEEECCCCCEEEEecCCCcEEEEEcccceeeeeecCCccceEEEEEcCCCCcEEEEEeCCCeEEEEeCCC
Q 021247          159 KFVLSVAWSPDGRRIACGSMDGTISVFDVTRAKFLHHLEGHFMPVRSLVYSPVDPRVLFSASDDTHVHMYDAEG  232 (315)
Q Consensus       159 ~~i~~~~~~~~~~~l~~~s~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~  232 (315)
                      ..+.+++++|+...|+.|..||+|.+||..++...  .......+..++|+| ++.+++.|+..|.+.+||+.-
T Consensus       260 s~v~~ca~sp~E~kLvlGC~DgSiiLyD~~~~~t~--~~ka~~~P~~iaWHp-~gai~~V~s~qGelQ~FD~AL  330 (545)
T PF11768_consen  260 SQVICCARSPSEDKLVLGCEDGSIILYDTTRGVTL--LAKAEFIPTLIAWHP-DGAIFVVGSEQGELQCFDMAL  330 (545)
T ss_pred             CcceEEecCcccceEEEEecCCeEEEEEcCCCeee--eeeecccceEEEEcC-CCcEEEEEcCCceEEEEEeec
Confidence            34889999999999999999999999998665332  223345678999999 677999999999999999753

>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]

Probab=98.24  E-value=0.00015  Score=62.69  Aligned_cols=169  Identities=25%  Similarity=0.317  Sum_probs=98.0

Q ss_pred             CceeEEeeCCcccEEEEEECCCCCeEEEEe---cCCCeEEEEecCCcceeeeecCCCCCCCCCCccCCCCcceEEEEECC
Q 021247           92 NASIATLEASPSEVWQMQFDPKGTTLAVAG---GGSASVKLWDTATWNLIATLSIPRPEGLKPTDKSSSKKFVLSVAWSP  168 (315)
Q Consensus        92 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~---~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~  168 (315)
                      +.....+......+..-+|+|++..++...   .....+.++|+.+++.....+.+..              -..-+|+|
T Consensus       182 g~~~~~l~~~~~~~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~~~~g~--------------~~~P~fsp  247 (425)
T COG0823         182 GYNQQKLTDSGSLILTPAWSPDGKKLAYVSFELGGCPRIYYLDLNTGKRPVILNFNGN--------------NGAPAFSP  247 (425)
T ss_pred             CcceeEecccCcceeccccCcCCCceEEEEEecCCCceEEEEeccCCccceeeccCCc--------------cCCccCCC
Confidence            333444444445566678888887655432   2114588888887665444432211              22457899


Q ss_pred             CCCEEEE-ecCCCc--EEEEEcccceeeeeecCCccceEEEEEcCCCCcEEEEEeCCCe--EEEEeCCCCeeEEEeeccc
Q 021247          169 DGRRIAC-GSMDGT--ISVFDVTRAKFLHHLEGHFMPVRSLVYSPVDPRVLFSASDDTH--VHMYDAEGKSLVTAMSGHA  243 (315)
Q Consensus       169 ~~~~l~~-~s~dg~--i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~--i~~wd~~~~~~~~~~~~~~  243 (315)
                      ||+.|+- ...||.  |+++|+....... +......-..-.|+|++..+.++.+..|.  |.+++.++.... .+....
T Consensus       248 DG~~l~f~~~rdg~~~iy~~dl~~~~~~~-Lt~~~gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~~~-riT~~~  325 (425)
T COG0823         248 DGSKLAFSSSRDGSPDIYLMDLDGKNLPR-LTNGFGINTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQVT-RLTFSG  325 (425)
T ss_pred             CCCEEEEEECCCCCccEEEEcCCCCccee-cccCCccccCccCCCCCCEEEEEeCCCCCcceEEECCCCCcee-EeeccC
Confidence            9998764 455664  7777887666332 43322222355788966666666666665  666676666542 222222


Q ss_pred             ccEEEEEEcCCCCeEEEEeC-CCc--EEEEecCccc
Q 021247          244 SWVLSVDASPDGAAITTGSS-DRT--VKLWDLNMRA  276 (315)
Q Consensus       244 ~~i~~~~~~~~~~~l~s~~~-d~~--i~iwd~~~~~  276 (315)
                      ..-..-.++|+|++++..+. +|.  |.+.++..+.
T Consensus       326 ~~~~~p~~SpdG~~i~~~~~~~g~~~i~~~~~~~~~  361 (425)
T COG0823         326 GGNSNPVWSPDGDKIVFESSSGGQWDIDKNDLASGG  361 (425)
T ss_pred             CCCcCccCCCCCCEEEEEeccCCceeeEEeccCCCC
Confidence            22225678999998876664 344  5566665544

>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=98.21  E-value=7e-07  Score=77.25  Aligned_cols=186  Identities=17%  Similarity=0.321  Sum_probs=116.1

Q ss_pred             CeEEEEecCCCeEEEEecCCcceeeeecCCCCCCCCCCccCCCCcceEEEEECC-CCCEEEEec----CCCcEEEEEccc
Q 021247          115 TTLAVAGGGSASVKLWDTATWNLIATLSIPRPEGLKPTDKSSSKKFVLSVAWSP-DGRRIACGS----MDGTISVFDVTR  189 (315)
Q Consensus       115 ~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~s----~dg~i~i~d~~~  189 (315)
                      ..++..|..+|.|.+-..+....-           .......+..+.++++|++ |.+.||+|-    .|..+.|||+.+
T Consensus        70 ~cIlavG~atG~I~l~s~r~~hdS-----------s~E~tp~~ar~Ct~lAwneLDtn~LAagldkhrnds~~~Iwdi~s  138 (783)
T KOG1008|consen   70 RCILAVGSATGNISLLSVRHPHDS-----------SAEVTPGYARPCTSLAWNELDTNHLAAGLDKHRNDSSLKIWDINS  138 (783)
T ss_pred             hhhhhhccccCceEEeecCCcccc-----------cceecccccccccccccccccHHHHHhhhhhhcccCCccceeccc
Confidence            356677888888887766542211           0111122345578999998 567788874    356799999976


Q ss_pred             c--eeee--eecC-CccceEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCeeEEEeecccccEEEEEEcC-CCCeEEEEeC
Q 021247          190 A--KFLH--HLEG-HFMPVRSLVYSPVDPRVLFSASDDTHVHMYDAEGKSLVTAMSGHASWVLSVDASP-DGAAITTGSS  263 (315)
Q Consensus       190 ~--~~~~--~~~~-~~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~s~~~  263 (315)
                      +  .+..  .+.+ ......++.|. .+.+++++|...+.++++|++...... ..-....+..+.++| .+.++++-. 
T Consensus       139 ~ltvPke~~~fs~~~l~gqns~cwl-rd~klvlaGm~sr~~~ifdlRqs~~~~-~svnTk~vqG~tVdp~~~nY~cs~~-  215 (783)
T KOG1008|consen  139 LLTVPKESPLFSSSTLDGQNSVCWL-RDTKLVLAGMTSRSVHIFDLRQSLDSV-SSVNTKYVQGITVDPFSPNYFCSNS-  215 (783)
T ss_pred             ccCCCccccccccccccCccccccc-cCcchhhcccccchhhhhhhhhhhhhh-hhhhhhhcccceecCCCCCceeccc-
Confidence            5  2211  1222 22344577777 467788899999999999987432111 011133456677888 677877665 


Q ss_pred             CCcEEEEec-Cc-cceehcccccc----cceEEEEEeeCC-CEEEEEeCC-CcEEEeec
Q 021247          264 DRTVKLWDL-NM-RAAMQSMTNHT----DQVWGVSFRPLG-GRVVSVSDD-KSISLYEY  314 (315)
Q Consensus       264 d~~i~iwd~-~~-~~~~~~~~~~~----~~v~~~~~s~~~-~~l~s~~~d-~~i~i~~~  314 (315)
                      |+.|.+||. +. ..++..+....    +++..++|.|-. ..+++...| ++|+++++
T Consensus       216 dg~iAiwD~~rnienpl~~i~~~~N~~~~~l~~~aycPtrtglla~l~RdS~tIrlydi  274 (783)
T KOG1008|consen  216 DGDIAIWDTYRNIENPLQIILRNENKKPKQLFALAYCPTRTGLLAVLSRDSITIRLYDI  274 (783)
T ss_pred             cCceeeccchhhhccHHHHHhhCCCCcccceeeEEeccCCcchhhhhccCcceEEEecc
Confidence            999999993 32 23344433222    348899999963 345555554 88998875

>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins

Probab=98.20  E-value=8.4e-05  Score=68.15  Aligned_cols=139  Identities=17%  Similarity=0.202  Sum_probs=95.1

Q ss_pred             CCCEEEEe-cCCCcEEEEEcccceeeeeecCCccc-eEEEEE----cCCCCcEEEEEeCCCeEEEEeCCCC--eeEEE-e
Q 021247          169 DGRRIACG-SMDGTISVFDVTRAKFLHHLEGHFMP-VRSLVY----SPVDPRVLFSASDDTHVHMYDAEGK--SLVTA-M  239 (315)
Q Consensus       169 ~~~~l~~~-s~dg~i~i~d~~~~~~~~~~~~~~~~-v~~~~~----~~~~~~~l~s~~~d~~i~~wd~~~~--~~~~~-~  239 (315)
                      +.++|+.. .....++-.|+++|+.+..+..+... |..++=    ....+...+.|-.+..+..||++-.  +++.. .
T Consensus       492 d~~mil~~~~~~~~ly~mDLe~GKVV~eW~~~~~~~v~~~~p~~K~aqlt~e~tflGls~n~lfriDpR~~~~k~v~~~~  571 (794)
T PF08553_consen  492 DRNMILLDPNNPNKLYKMDLERGKVVEEWKVHDDIPVVDIAPDSKFAQLTNEQTFLGLSDNSLFRIDPRLSGNKLVDSQS  571 (794)
T ss_pred             ccceEeecCCCCCceEEEecCCCcEEEEeecCCCcceeEecccccccccCCCceEEEECCCceEEeccCCCCCceeeccc
Confidence            34444433 45678999999999999999877654 555431    1112345677888889999998743  23311 1


Q ss_pred             e--cccccEEEEEEcCCCCeEEEEeCCCcEEEEecCccceehcccccccceEEEEEeeCCCEEEEEeCCCc
Q 021247          240 S--GHASWVLSVDASPDGAAITTGSSDRTVKLWDLNMRAAMQSMTNHTDQVWGVSFRPLGGRVVSVSDDKS  308 (315)
Q Consensus       240 ~--~~~~~i~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~  308 (315)
                      .  .......+++-+.+| +||+|+.+|.||+||--..+....+++-.++|.+|..+.||++|++.+..--
T Consensus       572 k~Y~~~~~Fs~~aTt~~G-~iavgs~~G~IRLyd~~g~~AKT~lp~lG~pI~~iDvt~DGkwilaTc~tyL  641 (794)
T PF08553_consen  572 KQYSSKNNFSCFATTEDG-YIAVGSNKGDIRLYDRLGKRAKTALPGLGDPIIGIDVTADGKWILATCKTYL  641 (794)
T ss_pred             cccccCCCceEEEecCCc-eEEEEeCCCcEEeecccchhhhhcCCCCCCCeeEEEecCCCcEEEEeecceE
Confidence            0  123456777777776 5899999999999994332223335666789999999999999988876443

Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].

>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []

Probab=98.18  E-value=0.002  Score=51.43  Aligned_cols=205  Identities=12%  Similarity=0.149  Sum_probs=111.9

Q ss_pred             eeccccccceEEEEeCCCCC-EEEEeeCCCeEEEEECCCCceeEEeeCC-cccEEEEEECCCCCeEEEEecCCCeEEEEe
Q 021247           54 RTNTGHCLGVVSVAAHPSGI-IAASASLDSFVRVFDVDTNASIATLEAS-PSEVWQMQFDPKGTTLAVAGGGSASVKLWD  131 (315)
Q Consensus        54 ~~~~~h~~~v~~~~~~~~g~-~l~s~~~d~~i~~w~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~~~~~~~~d~~i~~~d  131 (315)
                      +.+++-...+..|.++|+.. +++.....+.|...+. +++.+..+... ......+++..++. ++++...++.+.+++
T Consensus        15 ~~l~g~~~e~SGLTy~pd~~tLfaV~d~~~~i~els~-~G~vlr~i~l~g~~D~EgI~y~g~~~-~vl~~Er~~~L~~~~   92 (248)
T PF06977_consen   15 KPLPGILDELSGLTYNPDTGTLFAVQDEPGEIYELSL-DGKVLRRIPLDGFGDYEGITYLGNGR-YVLSEERDQRLYIFT   92 (248)
T ss_dssp             EE-TT--S-EEEEEEETTTTEEEEEETTTTEEEEEET-T--EEEEEE-SS-SSEEEEEE-STTE-EEEEETTTTEEEEEE
T ss_pred             eECCCccCCccccEEcCCCCeEEEEECCCCEEEEEcC-CCCEEEEEeCCCCCCceeEEEECCCE-EEEEEcCCCcEEEEE
Confidence            34556556699999999754 6666677788888886 46666666443 35577888876654 445556688898888


Q ss_pred             cCCcc-e-----eeeecCCCCCCCCCCccCCCCcceEEEEECCCCCEEEEecCCCcEEEEEccc---ceee--ee-----
Q 021247          132 TATWN-L-----IATLSIPRPEGLKPTDKSSSKKFVLSVAWSPDGRRIACGSMDGTISVFDVTR---AKFL--HH-----  195 (315)
Q Consensus       132 ~~~~~-~-----~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~s~dg~i~i~d~~~---~~~~--~~-----  195 (315)
                      +.... .     ...+.+...        ...+..+-.++|+|.++.|+.+-+..-..+|.+..   ...+  ..     
T Consensus        93 ~~~~~~~~~~~~~~~~~l~~~--------~~~N~G~EGla~D~~~~~L~v~kE~~P~~l~~~~~~~~~~~~~~~~~~~~~  164 (248)
T PF06977_consen   93 IDDDTTSLDRADVQKISLGFP--------NKGNKGFEGLAYDPKTNRLFVAKERKPKRLYEVNGFPGGFDLFVSDDQDLD  164 (248)
T ss_dssp             E----TT--EEEEEEEE---S-----------SS--EEEEEETTTTEEEEEEESSSEEEEEEESTT-SS--EEEE-HHHH
T ss_pred             EeccccccchhhceEEecccc--------cCCCcceEEEEEcCCCCEEEEEeCCCChhhEEEccccCccceeeccccccc
Confidence            74321 1     112221111        11233478999999888777776665566665543   1111  11     


Q ss_pred             -ecCCccceEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCeeEEEee--c-c------cccEEEEEEcCCCCeEEEEeCCC
Q 021247          196 -LEGHFMPVRSLVYSPVDPRVLFSASDDTHVHMYDAEGKSLVTAMS--G-H------ASWVLSVDASPDGAAITTGSSDR  265 (315)
Q Consensus       196 -~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~--~-~------~~~i~~~~~~~~~~~l~s~~~d~  265 (315)
                       .......+.++.++|..+++++.+.....|..+|.++ +.+..+.  . .      -...-.++++++|.+.++ +.-+
T Consensus       165 ~~~~~~~d~S~l~~~p~t~~lliLS~es~~l~~~d~~G-~~~~~~~L~~g~~gl~~~~~QpEGIa~d~~G~LYIv-sEpN  242 (248)
T PF06977_consen  165 DDKLFVRDLSGLSYDPRTGHLLILSDESRLLLELDRQG-RVVSSLSLDRGFHGLSKDIPQPEGIAFDPDGNLYIV-SEPN  242 (248)
T ss_dssp             -HT--SS---EEEEETTTTEEEEEETTTTEEEEE-TT---EEEEEE-STTGGG-SS---SEEEEEE-TT--EEEE-ETTT
T ss_pred             cccceeccccceEEcCCCCeEEEEECCCCeEEEECCCC-CEEEEEEeCCcccCcccccCCccEEEECCCCCEEEE-cCCc
Confidence             1123345678999998888999999999999999554 4444332  1 1      124678999999875554 4444


Q ss_pred             cEEEE
Q 021247          266 TVKLW  270 (315)
Q Consensus       266 ~i~iw  270 (315)
                      ..++|
T Consensus       243 lfy~f  247 (248)
T PF06977_consen  243 LFYRF  247 (248)
T ss_dssp             EEEEE
T ss_pred             eEEEe
Confidence            44443

Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.

>COG3391 Uncharacterized conserved protein [Function unknown]

Probab=98.18  E-value=0.0034  Score=54.03  Aligned_cols=218  Identities=23%  Similarity=0.300  Sum_probs=147.8

Q ss_pred             eEEEEeCCCCC-EEEEeeCCCeEEEEECCCCceeEEeeCCcccEEEEEECCCCCeEEEEec--CCCeEEEEecCCcceee
Q 021247           63 VVSVAAHPSGI-IAASASLDSFVRVFDVDTNASIATLEASPSEVWQMQFDPKGTTLAVAGG--GSASVKLWDTATWNLIA  139 (315)
Q Consensus        63 v~~~~~~~~g~-~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~--~d~~i~~~d~~~~~~~~  139 (315)
                      ...+.+++.+. .++....+..|.+.|..+........... ....++++|+++.++++-.  .++++.+.|..+.+...
T Consensus        76 p~~i~v~~~~~~vyv~~~~~~~v~vid~~~~~~~~~~~vG~-~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~~~~~  154 (381)
T COG3391          76 PAGVAVNPAGNKVYVTTGDSNTVSVIDTATNTVLGSIPVGL-GPVGLAVDPDGKYVYVANAGNGNNTVSVIDAATNKVTA  154 (381)
T ss_pred             ccceeeCCCCCeEEEecCCCCeEEEEcCcccceeeEeeecc-CCceEEECCCCCEEEEEecccCCceEEEEeCCCCeEEE
Confidence            45667778776 55566667899999988777666655443 4557899999988888776  47899999998888776


Q ss_pred             eecCCCCCCCCCCccCCCCcceEEEEECCCCCEEEEe-cCCCcEEEEEcccceeee-e---ecCCccceEEEEEcCCCCc
Q 021247          140 TLSIPRPEGLKPTDKSSSKKFVLSVAWSPDGRRIACG-SMDGTISVFDVTRAKFLH-H---LEGHFMPVRSLVYSPVDPR  214 (315)
Q Consensus       140 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-s~dg~i~i~d~~~~~~~~-~---~~~~~~~v~~~~~~~~~~~  214 (315)
                      ......             . -..+++.|+|+.++.. ..++.+.+.|........ .   ...-......+.+.|++.+
T Consensus       155 ~~~vG~-------------~-P~~~a~~p~g~~vyv~~~~~~~v~vi~~~~~~v~~~~~~~~~~~~~~P~~i~v~~~g~~  220 (381)
T COG3391         155 TIPVGN-------------T-PTGVAVDPDGNKVYVTNSDDNTVSVIDTSGNSVVRGSVGSLVGVGTGPAGIAVDPDGNR  220 (381)
T ss_pred             EEecCC-------------C-cceEEECCCCCeEEEEecCCCeEEEEeCCCcceeccccccccccCCCCceEEECCCCCE
Confidence            643211             1 1579999999966554 578899999977665543 1   0111223467788886655


Q ss_pred             EEEEEeCC--CeEEEEeCCCCeeEEE--eecccccEEEEEEcCCCCeEEEEeC-CCcEEEEecCccceehcccccc---c
Q 021247          215 VLFSASDD--THVHMYDAEGKSLVTA--MSGHASWVLSVDASPDGAAITTGSS-DRTVKLWDLNMRAAMQSMTNHT---D  286 (315)
Q Consensus       215 ~l~s~~~d--~~i~~wd~~~~~~~~~--~~~~~~~i~~~~~~~~~~~l~s~~~-d~~i~iwd~~~~~~~~~~~~~~---~  286 (315)
                      ..++...+  +.+...|...+.....  ..+.. ....+..+|+|..+.+... .+.+.+.|..............   .
T Consensus       221 ~yV~~~~~~~~~v~~id~~~~~v~~~~~~~~~~-~~~~v~~~p~g~~~yv~~~~~~~V~vid~~~~~v~~~~~~~~~~~~  299 (381)
T COG3391         221 VYVANDGSGSNNVLKIDTATGNVTATDLPVGSG-APRGVAVDPAGKAAYVANSQGGTVSVIDGATDRVVKTGPTGNEALG  299 (381)
T ss_pred             EEEEeccCCCceEEEEeCCCceEEEeccccccC-CCCceeECCCCCEEEEEecCCCeEEEEeCCCCceeeeecccccccc
Confidence            55555544  6899999988776654  22222 5667899999998877744 4889999988766555433222   2


Q ss_pred             ceEEEEEeeC
Q 021247          287 QVWGVSFRPL  296 (315)
Q Consensus       287 ~v~~~~~s~~  296 (315)
                      .+..+++.+.
T Consensus       300 ~~~~~~~~~~  309 (381)
T COG3391         300 EPVSIAISPL  309 (381)
T ss_pred             cceeccceee
Confidence            3455555554

>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=98.14  E-value=0.00017  Score=62.67  Aligned_cols=139  Identities=19%  Similarity=0.238  Sum_probs=78.1

Q ss_pred             ceEEEEECCCCCEEEEecCCCcEEEEEcccceeeeeecCCccceEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCeeEEEe
Q 021247          160 FVLSVAWSPDGRRIACGSMDGTISVFDVTRAKFLHHLEGHFMPVRSLVYSPVDPRVLFSASDDTHVHMYDAEGKSLVTAM  239 (315)
Q Consensus       160 ~i~~~~~~~~~~~l~~~s~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~  239 (315)
                      ++..+.++|+|+.++++ .||...++.....+...     .+.-..+.|.+ .+ .++.-...+.|.++.--..+....+
T Consensus        34 ~p~~ls~npngr~v~V~-g~geY~iyt~~~~r~k~-----~G~g~~~vw~~-~n-~yAv~~~~~~I~I~kn~~~~~~k~i  105 (443)
T PF04053_consen   34 YPQSLSHNPNGRFVLVC-GDGEYEIYTALAWRNKA-----FGSGLSFVWSS-RN-RYAVLESSSTIKIYKNFKNEVVKSI  105 (443)
T ss_dssp             --SEEEE-TTSSEEEEE-ETTEEEEEETTTTEEEE-----EEE-SEEEE-T-SS-EEEEE-TTS-EEEEETTEE-TT---
T ss_pred             CCeeEEECCCCCEEEEE-cCCEEEEEEccCCcccc-----cCceeEEEEec-Cc-cEEEEECCCeEEEEEcCccccceEE
Confidence            46789999999998884 67788888743333222     12345677887 33 4556656888998743222221112


Q ss_pred             ecccccEEEEEEcCCCCeEEEEeCCCcEEEEecCccceehcccccccceEEEEEeeCCCEEEEEeCCCcEEEeec
Q 021247          240 SGHASWVLSVDASPDGAAITTGSSDRTVKLWDLNMRAAMQSMTNHTDQVWGVSFRPLGGRVVSVSDDKSISLYEY  314 (315)
Q Consensus       240 ~~~~~~i~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~i~i~~~  314 (315)
                      ... ..+..+-.   |.+|...+.+ .|.+||..+++.+..+..  .+|..|.|+++|.+++-.+.+ ++.|+++
T Consensus       106 ~~~-~~~~~If~---G~LL~~~~~~-~i~~yDw~~~~~i~~i~v--~~vk~V~Ws~~g~~val~t~~-~i~il~~  172 (443)
T PF04053_consen  106 KLP-FSVEKIFG---GNLLGVKSSD-FICFYDWETGKLIRRIDV--SAVKYVIWSDDGELVALVTKD-SIYILKY  172 (443)
T ss_dssp             --S-S-EEEEE----SSSEEEEETT-EEEEE-TTT--EEEEESS---E-EEEEE-TTSSEEEEE-S--SEEEEEE
T ss_pred             cCC-cccceEEc---CcEEEEECCC-CEEEEEhhHcceeeEEec--CCCcEEEEECCCCEEEEEeCC-eEEEEEe
Confidence            111 11222221   7777776655 899999999998888764  248999999999999888755 6666654

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.

>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A

Probab=98.11  E-value=0.004  Score=52.38  Aligned_cols=268  Identities=15%  Similarity=0.128  Sum_probs=116.7

Q ss_pred             CcEEEEeeCCCcEEEE--cCCCCcceeeccccccceEEEEeCCCCCEEEEeeCCCeEEEEECCCCceeEEeeCCcccEEE
Q 021247           30 PALLLTGSLDETVKLW--RPDDMQLERTNTGHCLGVVSVAAHPSGIIAASASLDSFVRVFDVDTNASIATLEASPSEVWQ  107 (315)
Q Consensus        30 ~~~l~sgs~d~~v~~w--~~~~~~~~~~~~~h~~~v~~~~~~~~g~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~v~~  107 (315)
                      +.+|+++..||.-.+|  |+++.+..+.-.+..........+++...++=......++..|+.+.+....+.....-+-.
T Consensus        48 ~kllF~s~~dg~~nly~lDL~t~~i~QLTdg~g~~~~g~~~s~~~~~~~Yv~~~~~l~~vdL~T~e~~~vy~~p~~~~g~  127 (386)
T PF14583_consen   48 RKLLFASDFDGNRNLYLLDLATGEITQLTDGPGDNTFGGFLSPDDRALYYVKNGRSLRRVDLDTLEERVVYEVPDDWKGY  127 (386)
T ss_dssp             -EEEEEE-TTSS-EEEEEETTT-EEEE---SS-B-TTT-EE-TTSSEEEEEETTTEEEEEETTT--EEEEEE--TTEEEE
T ss_pred             CEEEEEeccCCCcceEEEEcccCEEEECccCCCCCccceEEecCCCeEEEEECCCeEEEEECCcCcEEEEEECCcccccc
Confidence            3578888888865555  66676665544432222223455677776654545568888899988766555555444433


Q ss_pred             EEEC--CCCCeEEEEec--C-------------------CCeEEEEecCCcceeeeecCCCCCCCCCCccCCCCcceEEE
Q 021247          108 MQFD--PKGTTLAVAGG--G-------------------SASVKLWDTATWNLIATLSIPRPEGLKPTDKSSSKKFVLSV  164 (315)
Q Consensus       108 ~~~~--~~~~~~~~~~~--~-------------------d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~  164 (315)
                      ..|.  .++..++-.-.  .                   ...|.-.|+.+++..              .......++..+
T Consensus       128 gt~v~n~d~t~~~g~e~~~~d~~~l~~~~~f~e~~~a~p~~~i~~idl~tG~~~--------------~v~~~~~wlgH~  193 (386)
T PF14583_consen  128 GTWVANSDCTKLVGIEISREDWKPLTKWKGFREFYEARPHCRIFTIDLKTGERK--------------VVFEDTDWLGHV  193 (386)
T ss_dssp             EEEEE-TTSSEEEEEEEEGGG-----SHHHHHHHHHC---EEEEEEETTT--EE--------------EEEEESS-EEEE
T ss_pred             cceeeCCCccEEEEEEEeehhccCccccHHHHHHHhhCCCceEEEEECCCCcee--------------EEEecCccccCc
Confidence            4442  33333211100  0                   011112222222111              111234567788


Q ss_pred             EECCCCC-EEEEecCCC----cEEEEEccc-ceeeeeecCC--ccceEEEEEcCCCCcEEEEE----eCCCeEEEEeCCC
Q 021247          165 AWSPDGR-RIACGSMDG----TISVFDVTR-AKFLHHLEGH--FMPVRSLVYSPVDPRVLFSA----SDDTHVHMYDAEG  232 (315)
Q Consensus       165 ~~~~~~~-~l~~~s~dg----~i~i~d~~~-~~~~~~~~~~--~~~v~~~~~~~~~~~~l~s~----~~d~~i~~wd~~~  232 (315)
                      .|+|... .|+-|.+..    .-+||-+.+ +.....+..+  ...+.---|.|++..+..-+    +.+..|.-+|..+
T Consensus       194 ~fsP~dp~li~fCHEGpw~~Vd~RiW~i~~dg~~~~~v~~~~~~e~~gHEfw~~DG~~i~y~~~~~~~~~~~i~~~d~~t  273 (386)
T PF14583_consen  194 QFSPTDPTLIMFCHEGPWDLVDQRIWTINTDGSNVKKVHRRMEGESVGHEFWVPDGSTIWYDSYTPGGQDFWIAGYDPDT  273 (386)
T ss_dssp             EEETTEEEEEEEEE-S-TTTSS-SEEEEETTS---EESS---TTEEEEEEEE-TTSS-EEEEEEETTT--EEEEEE-TTT
T ss_pred             ccCCCCCCEEEEeccCCcceeceEEEEEEcCCCcceeeecCCCCcccccccccCCCCEEEEEeecCCCCceEEEeeCCCC
Confidence            8999544 445554321    124554421 2222222222  23344456787655544433    2345677788877


Q ss_pred             CeeEEEeecccccEEEEEEcCCCCeEEEEeCCC----------------cEEEEecCcccee---------hcccccccc
Q 021247          233 KSLVTAMSGHASWVLSVDASPDGAAITTGSSDR----------------TVKLWDLNMRAAM---------QSMTNHTDQ  287 (315)
Q Consensus       233 ~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~d~----------------~i~iwd~~~~~~~---------~~~~~~~~~  287 (315)
                      +.....+.  ..+...+-.+++|++++-=+.|.                -|+++++..++..         ..+.++...
T Consensus       274 ~~~~~~~~--~p~~~H~~ss~Dg~L~vGDG~d~p~~v~~~~~~~~~~~p~i~~~~~~~~~~~~l~~h~~sw~v~~~~~q~  351 (386)
T PF14583_consen  274 GERRRLME--MPWCSHFMSSPDGKLFVGDGGDAPVDVADAGGYKIENDPWIYLFDVEAGRFRKLARHDTSWKVLDGDRQV  351 (386)
T ss_dssp             --EEEEEE--E-SEEEEEE-TTSSEEEEEE-------------------EEEEEETTTTEEEEEEE-------BTTBSST
T ss_pred             CCceEEEe--CCceeeeEEcCCCCEEEecCCCCCccccccccceecCCcEEEEeccccCceeeeeeccCcceeecCCCcc
Confidence            64432222  23455677788998776555542                4566777654432         112222211


Q ss_pred             -eEEEEEeeCCCEEE-EEeCCCcEEEee
Q 021247          288 -VWGVSFRPLGGRVV-SVSDDKSISLYE  313 (315)
Q Consensus       288 -v~~~~~s~~~~~l~-s~~~d~~i~i~~  313 (315)
                       =-...|+|||++|+ +...+|...||-
T Consensus       352 ~hPhp~FSPDgk~VlF~Sd~~G~~~vY~  379 (386)
T PF14583_consen  352 THPHPSFSPDGKWVLFRSDMEGPPAVYL  379 (386)
T ss_dssp             T----EE-TTSSEEEEEE-TTSS-EEEE
T ss_pred             CCCCCccCCCCCEEEEECCCCCCccEEE
Confidence             13578999999986 455567777763

>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit

Probab=98.10  E-value=0.00047  Score=57.95  Aligned_cols=174  Identities=17%  Similarity=0.257  Sum_probs=105.8

Q ss_pred             eEEEEecCCcceeeeecCCCCCCCCCCccCCCCcceEEEEECCC----CCEEEEecC---------C-CcEEEEEcccc-
Q 021247          126 SVKLWDTATWNLIATLSIPRPEGLKPTDKSSSKKFVLSVAWSPD----GRRIACGSM---------D-GTISVFDVTRA-  190 (315)
Q Consensus       126 ~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~----~~~l~~~s~---------d-g~i~i~d~~~~-  190 (315)
                      .|++.|..+++.+..+.++..+.         ...+..+.+..+    ..+|++|+.         . |.|.++++... 
T Consensus         3 ~i~l~d~~~~~~~~~~~l~~~E~---------~~s~~~~~l~~~~~~~~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~   73 (321)
T PF03178_consen    3 SIRLVDPTTFEVLDSFELEPNEH---------VTSLCSVKLKGDSTGKKEYIVVGTAFNYGEDPEPSSGRILVFEISESP   73 (321)
T ss_dssp             EEEEEETTTSSEEEEEEEETTEE---------EEEEEEEEETTS---SSEEEEEEEEE--TTSSS-S-EEEEEEEECSS-
T ss_pred             EEEEEeCCCCeEEEEEECCCCce---------EEEEEEEEEcCccccccCEEEEEecccccccccccCcEEEEEEEEccc
Confidence            57888888877777766543321         011223334332    457777652         2 88999999873 


Q ss_pred             ---eeeeee--cCCccceEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCe-eEEEeec-ccccEEEEEEcCCCCeEEEEeC
Q 021247          191 ---KFLHHL--EGHFMPVRSLVYSPVDPRVLFSASDDTHVHMYDAEGKS-LVTAMSG-HASWVLSVDASPDGAAITTGSS  263 (315)
Q Consensus       191 ---~~~~~~--~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~-~~~~~~~-~~~~i~~~~~~~~~~~l~s~~~  263 (315)
                         ..+..+  ....++|.++.-.  +++++++.  .+.|.+|++...+ ++..-.- ....+.++...  +.+++.|..
T Consensus        74 ~~~~~l~~i~~~~~~g~V~ai~~~--~~~lv~~~--g~~l~v~~l~~~~~l~~~~~~~~~~~i~sl~~~--~~~I~vgD~  147 (321)
T PF03178_consen   74 ENNFKLKLIHSTEVKGPVTAICSF--NGRLVVAV--GNKLYVYDLDNSKTLLKKAFYDSPFYITSLSVF--KNYILVGDA  147 (321)
T ss_dssp             ----EEEEEEEEEESS-EEEEEEE--TTEEEEEE--TTEEEEEEEETTSSEEEEEEE-BSSSEEEEEEE--TTEEEEEES
T ss_pred             ccceEEEEEEEEeecCcceEhhhh--CCEEEEee--cCEEEEEEccCcccchhhheecceEEEEEEecc--ccEEEEEEc
Confidence               122211  2346788888755  45533333  4789999987766 4433221 23356666554  558999999


Q ss_pred             CCcEEEEecCc-cceehcccc--cccceEEEEEeeCCCEEEEEeCCCcEEEeec
Q 021247          264 DRTVKLWDLNM-RAAMQSMTN--HTDQVWGVSFRPLGGRVVSVSDDKSISLYEY  314 (315)
Q Consensus       264 d~~i~iwd~~~-~~~~~~~~~--~~~~v~~~~~s~~~~~l~s~~~d~~i~i~~~  314 (315)
                      -..+.++..+. ...+..+..  ....++++.|-+++..++.+..+|.+.++.+
T Consensus       148 ~~sv~~~~~~~~~~~l~~va~d~~~~~v~~~~~l~d~~~~i~~D~~gnl~~l~~  201 (321)
T PF03178_consen  148 MKSVSLLRYDEENNKLILVARDYQPRWVTAAEFLVDEDTIIVGDKDGNLFVLRY  201 (321)
T ss_dssp             SSSEEEEEEETTTE-EEEEEEESS-BEEEEEEEE-SSSEEEEEETTSEEEEEEE
T ss_pred             ccCEEEEEEEccCCEEEEEEecCCCccEEEEEEecCCcEEEEEcCCCeEEEEEE
Confidence            88898885543 222322222  2346888888877778999999999999876

CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....

>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases

Probab=98.09  E-value=0.0068  Score=54.10  Aligned_cols=239  Identities=15%  Similarity=0.202  Sum_probs=131.3

Q ss_pred             cEEEEeeCCCcEEEEcCCCCcceeecccccc--ceEEEEeCC---CCCEEEEee---------CCCeEEEEECCCCceeE
Q 021247           31 ALLLTGSLDETVKLWRPDDMQLERTNTGHCL--GVVSVAAHP---SGIIAASAS---------LDSFVRVFDVDTNASIA   96 (315)
Q Consensus        31 ~~l~sgs~d~~v~~w~~~~~~~~~~~~~h~~--~v~~~~~~~---~g~~l~s~~---------~d~~i~~w~~~~~~~~~   96 (315)
                      ..++.++.|+.|.-+|.++++..........  .-..+.-+|   ++. ++.++         .++.+..+|..+++.+.
T Consensus       111 ~~V~v~~~~g~v~AlD~~TG~~~W~~~~~~~~~~~~~i~ssP~v~~~~-v~vg~~~~~~~~~~~~g~v~alD~~TG~~~W  189 (488)
T cd00216         111 RKVFFGTFDGRLVALDAETGKQVWKFGNNDQVPPGYTMTGAPTIVKKL-VIIGSSGAEFFACGVRGALRAYDVETGKLLW  189 (488)
T ss_pred             CeEEEecCCCeEEEEECCCCCEeeeecCCCCcCcceEecCCCEEECCE-EEEeccccccccCCCCcEEEEEECCCCceee
Confidence            4688888999999999988887655432111  000111111   233 33332         46889999999998877


Q ss_pred             EeeCCcc--------------------cEE-EEEECCCCCeEEEEecCCC------------------eEEEEecCCcce
Q 021247           97 TLEASPS--------------------EVW-QMQFDPKGTTLAVAGGGSA------------------SVKLWDTATWNL  137 (315)
Q Consensus        97 ~~~~~~~--------------------~v~-~~~~~~~~~~~~~~~~~d~------------------~i~~~d~~~~~~  137 (315)
                      .++....                    .++ ...+++.+..+++ +..++                  .+.-.|..+++.
T Consensus       190 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~vw~~pa~d~~~g~V~v-g~~~g~~~~~~~~~~~~~~~~~~~l~Ald~~tG~~  268 (488)
T cd00216         190 RFYTTEPDPNAFPTWGPDRQMWGPGGGTSWASPTYDPKTNLVYV-GTGNGSPWNWGGRRTPGDNLYTDSIVALDADTGKV  268 (488)
T ss_pred             EeeccCCCcCCCCCCCCCcceecCCCCCccCCeeEeCCCCEEEE-ECCCCCCCccCCccCCCCCCceeeEEEEcCCCCCE
Confidence            6644211                    111 2334444454444 44443                  789999999999


Q ss_pred             eeeecCCCCCCCCCCccCCCCc-ceEEEEECCCCC---EEEEecCCCcEEEEEcccceeeeeecCCccceEEEEEcCCCC
Q 021247          138 IATLSIPRPEGLKPTDKSSSKK-FVLSVAWSPDGR---RIACGSMDGTISVFDVTRAKFLHHLEGHFMPVRSLVYSPVDP  213 (315)
Q Consensus       138 ~~~~~~~~~~~~~~~~~~~~~~-~i~~~~~~~~~~---~l~~~s~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~  213 (315)
                      +..+.........   ...... .+..+. .-++.   .+++++.+|.+...|.++++.+-.....   ...+...|  +
T Consensus       269 ~W~~~~~~~~~~~---~~~~s~p~~~~~~-~~~g~~~~~V~~g~~~G~l~ald~~tG~~~W~~~~~---~~~~~~~~--~  339 (488)
T cd00216         269 KWFYQTTPHDLWD---YDGPNQPSLADIK-PKDGKPVPAIVHAPKNGFFYVLDRTTGKLISARPEV---EQPMAYDP--G  339 (488)
T ss_pred             EEEeeCCCCCCcc---cccCCCCeEEecc-ccCCCeeEEEEEECCCceEEEEECCCCcEeeEeEee---ccccccCC--c
Confidence            8877543221000   000000 011111 11233   5778889999999999999876543211   01122222  2


Q ss_pred             cEEEE-----------------EeCCCeEEEEeCCCCeeEEEeecc--c------ccE--EEEEEcCCCCeEEEEeCCCc
Q 021247          214 RVLFS-----------------ASDDTHVHMYDAEGKSLVTAMSGH--A------SWV--LSVDASPDGAAITTGSSDRT  266 (315)
Q Consensus       214 ~~l~s-----------------~~~d~~i~~wd~~~~~~~~~~~~~--~------~~i--~~~~~~~~~~~l~s~~~d~~  266 (315)
                      .+++.                 ...++.+.-.|.++++.+=.....  .      ...  ..+..  .+..|+.++.||.
T Consensus       340 ~vyv~~~~~~~~~~~~~~~~~~~~~~G~l~AlD~~tG~~~W~~~~~~~~~~~~~g~~~~~~~~~~--~g~~v~~g~~dG~  417 (488)
T cd00216         340 LVYLGAFHIPLGLPPQKKKRCKKPGKGGLAALDPKTGKVVWEKREGTIRDSWNIGFPHWGGSLAT--AGNLVFAGAADGY  417 (488)
T ss_pred             eEEEccccccccCcccccCCCCCCCceEEEEEeCCCCcEeeEeeCCccccccccCCcccCcceEe--cCCeEEEECCCCe
Confidence            22221                 123567888888777654222211  0      111  11122  4567888899999


Q ss_pred             EEEEecCccceehccc
Q 021247          267 VKLWDLNMRAAMQSMT  282 (315)
Q Consensus       267 i~iwd~~~~~~~~~~~  282 (315)
                      ++.+|.++++.+-+.+
T Consensus       418 l~ald~~tG~~lW~~~  433 (488)
T cd00216         418 FRAFDATTGKELWKFR  433 (488)
T ss_pred             EEEEECCCCceeeEEE
Confidence            9999999998765543

The alignment model contains an 8-bladed beta-propeller.

>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=98.08  E-value=0.0059  Score=53.26  Aligned_cols=220  Identities=13%  Similarity=0.172  Sum_probs=108.9

Q ss_pred             cccceEEEEeCCCCCEEEEeeCCCeEEEEECCCCceeEEeeCCcccEEEEEECCCCCeEEEEecCCCeEEEEecCCccee
Q 021247           59 HCLGVVSVAAHPSGIIAASASLDSFVRVFDVDTNASIATLEASPSEVWQMQFDPKGTTLAVAGGGSASVKLWDTATWNLI  138 (315)
Q Consensus        59 h~~~v~~~~~~~~g~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~  138 (315)
                      ....+..++.+|+|+.++.+ .||...++..........     +.-....|.+.+. ++ .-....+|.++.--..+..
T Consensus        31 ~~~~p~~ls~npngr~v~V~-g~geY~iyt~~~~r~k~~-----G~g~~~vw~~~n~-yA-v~~~~~~I~I~kn~~~~~~  102 (443)
T PF04053_consen   31 CEIYPQSLSHNPNGRFVLVC-GDGEYEIYTALAWRNKAF-----GSGLSFVWSSRNR-YA-VLESSSTIKIYKNFKNEVV  102 (443)
T ss_dssp             -SS--SEEEE-TTSSEEEEE-ETTEEEEEETTTTEEEEE-----EE-SEEEE-TSSE-EE-EE-TTS-EEEEETTEE-TT
T ss_pred             CCcCCeeEEECCCCCEEEEE-cCCEEEEEEccCCccccc-----CceeEEEEecCcc-EE-EEECCCeEEEEEcCccccc
Confidence            33457899999999988874 477777777444433222     2234567777544 43 3344778888632222211


Q ss_pred             eeecCCCCCCCCCCccCCCCcceEEEEECCCCCEEEEecCCCcEEEEEcccceeeeeecCCccceEEEEEcCCCCcEEEE
Q 021247          139 ATLSIPRPEGLKPTDKSSSKKFVLSVAWSPDGRRIACGSMDGTISVFDVTRAKFLHHLEGHFMPVRSLVYSPVDPRVLFS  218 (315)
Q Consensus       139 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~s~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s  218 (315)
                      ..+..+.              .+..+-.   |..|+..+.+ .|.+||..+++.+..+...  +|..+.|+++ +.+++-
T Consensus       103 k~i~~~~--------------~~~~If~---G~LL~~~~~~-~i~~yDw~~~~~i~~i~v~--~vk~V~Ws~~-g~~val  161 (443)
T PF04053_consen  103 KSIKLPF--------------SVEKIFG---GNLLGVKSSD-FICFYDWETGKLIRRIDVS--AVKYVIWSDD-GELVAL  161 (443)
T ss_dssp             -----SS---------------EEEEE----SSSEEEEETT-EEEEE-TTT--EEEEESS---E-EEEEE-TT-SSEEEE
T ss_pred             eEEcCCc--------------ccceEEc---CcEEEEECCC-CEEEEEhhHcceeeEEecC--CCcEEEEECC-CCEEEE
Confidence            1221110              1222322   7777776554 8999999999999888743  4899999984 555555


Q ss_pred             EeCCCeEEEEeCCCC-----------eeEEEeecccccEEEEEEcCCCCeEEEEeCCCcEEEEecCccceehcccccccc
Q 021247          219 ASDDTHVHMYDAEGK-----------SLVTAMSGHASWVLSVDASPDGAAITTGSSDRTVKLWDLNMRAAMQSMTNHTDQ  287 (315)
Q Consensus       219 ~~~d~~i~~wd~~~~-----------~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~  287 (315)
                      .+.+ .+.+++.+..           ........-...|.+..|..+  .++-.... .++.+---....+..+   ..+
T Consensus       162 ~t~~-~i~il~~~~~~~~~~~~~g~e~~f~~~~E~~~~IkSg~W~~d--~fiYtT~~-~lkYl~~Ge~~~i~~l---d~~  234 (443)
T PF04053_consen  162 VTKD-SIYILKYNLEAVAAIPEEGVEDAFELIHEISERIKSGCWVED--CFIYTTSN-HLKYLVNGETGIIAHL---DKP  234 (443)
T ss_dssp             E-S--SEEEEEE-HHHHHHBTTTB-GGGEEEEEEE-S--SEEEEETT--EEEEE-TT-EEEEEETTEEEEEEE----SS-
T ss_pred             EeCC-eEEEEEecchhcccccccCchhceEEEEEecceeEEEEEEcC--EEEEEcCC-eEEEEEcCCcceEEEc---CCc
Confidence            5544 4555442211           012222222455777788766  33333333 6766321111223333   346


Q ss_pred             eEEEEEeeCCCEEEEEeCCCcEEEeec
Q 021247          288 VWGVSFRPLGGRVVSVSDDKSISLYEY  314 (315)
Q Consensus       288 v~~~~~s~~~~~l~s~~~d~~i~i~~~  314 (315)
                      +.=+.+.|+.+.|.....|+.|..+.+
T Consensus       235 ~yllgy~~~~~~ly~~Dr~~~v~~~~l  261 (443)
T PF04053_consen  235 LYLLGYLPKENRLYLIDRDGNVISYEL  261 (443)
T ss_dssp             -EEEEEETTTTEEEEE-TT--EEEEE-
T ss_pred             eEEEEEEccCCEEEEEECCCCEEEEEE
Confidence            777888887789999999999888765

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.

>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region

Probab=98.04  E-value=0.00074  Score=45.91  Aligned_cols=107  Identities=19%  Similarity=0.159  Sum_probs=69.1

Q ss_pred             ceEEEEEeecCCCCCcEEEEeeCCCcEEEEcCCCCcceeeccccccceEEEEeCCCCCEEEEeeCCCeEEEEECCCCcee
Q 021247           16 SVWAVTWVPATETRPALLLTGSLDETVKLWRPDDMQLERTNTGHCLGVVSVAAHPSGIIAASASLDSFVRVFDVDTNASI   95 (315)
Q Consensus        16 ~v~~v~~~~~~~~~~~~l~sgs~d~~v~~w~~~~~~~~~~~~~h~~~v~~~~~~~~g~~l~s~~~d~~i~~w~~~~~~~~   95 (315)
                      .|+++++++.......-|+.||.|..|++|+-+  ++..+.. ....|.++..... ..++-+-.+|+|-+++-.  ..+
T Consensus         1 ~V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~~--e~~~Ei~-e~~~v~~L~~~~~-~~F~Y~l~NGTVGvY~~~--~Rl   74 (111)
T PF14783_consen    1 NVTALCLFDFDGDGENELLVGSDDFEIRVFKGD--EIVAEIT-ETDKVTSLCSLGG-GRFAYALANGTVGVYDRS--QRL   74 (111)
T ss_pred             CeeEEEEEecCCCCcceEEEecCCcEEEEEeCC--cEEEEEe-cccceEEEEEcCC-CEEEEEecCCEEEEEeCc--cee
Confidence            488999998776666789999999999999754  3444443 3456777776665 567778889998888753  333


Q ss_pred             EEeeCCcccEEEEEEC--CCCCeEEEEecCCCeEE
Q 021247           96 ATLEASPSEVWQMQFD--PKGTTLAVAGGGSASVK  128 (315)
Q Consensus        96 ~~~~~~~~~v~~~~~~--~~~~~~~~~~~~d~~i~  128 (315)
                      ..++....++.-..++  -+|..-+++|-.+|.|-
T Consensus        75 WRiKSK~~~~~~~~~D~~gdG~~eLI~GwsnGkve  109 (111)
T PF14783_consen   75 WRIKSKNQVTSMAFYDINGDGVPELIVGWSNGKVE  109 (111)
T ss_pred             eeeccCCCeEEEEEEcCCCCCceEEEEEecCCeEE
Confidence            4444333333222333  33444556676676653

>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]

Probab=97.93  E-value=0.002  Score=55.88  Aligned_cols=184  Identities=22%  Similarity=0.266  Sum_probs=101.0

Q ss_pred             cceEEEEeCCCCCEEEEe---eCC-CeEEEEECCCCceeEEeeCCcccEEEEEECCCCCeEEEEecCCCe--EEEEecCC
Q 021247           61 LGVVSVAAHPSGIIAASA---SLD-SFVRVFDVDTNASIATLEASPSEVWQMQFDPKGTTLAVAGGGSAS--VKLWDTAT  134 (315)
Q Consensus        61 ~~v~~~~~~~~g~~l~s~---~~d-~~i~~w~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~--i~~~d~~~  134 (315)
                      ..+..-.|+|++..++-.   ... ..+.++++++++...... ....-..-+|+|+|+.++++...|+.  |.++|+..
T Consensus       193 ~~~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~~-~~g~~~~P~fspDG~~l~f~~~rdg~~~iy~~dl~~  271 (425)
T COG0823         193 SLILTPAWSPDGKKLAYVSFELGGCPRIYYLDLNTGKRPVILN-FNGNNGAPAFSPDGSKLAFSSSRDGSPDIYLMDLDG  271 (425)
T ss_pred             cceeccccCcCCCceEEEEEecCCCceEEEEeccCCccceeec-cCCccCCccCCCCCCEEEEEECCCCCccEEEEcCCC
Confidence            345566788888765422   222 468999999887654443 23334456799999999998887775  66667776


Q ss_pred             cceeeeecCCCCCCCCCCccCCCCcceEEEEECCCCCEEEEec-CCCc--EEEEEcccceeeeeecCCccceEEEEEcCC
Q 021247          135 WNLIATLSIPRPEGLKPTDKSSSKKFVLSVAWSPDGRRIACGS-MDGT--ISVFDVTRAKFLHHLEGHFMPVRSLVYSPV  211 (315)
Q Consensus       135 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~s-~dg~--i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~  211 (315)
                      .+... ++  ...+           .-..=.|+|+|++++-.+ ..|.  |.++|++.... ..+......-..-.|+|+
T Consensus       272 ~~~~~-Lt--~~~g-----------i~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~~-~riT~~~~~~~~p~~Spd  336 (425)
T COG0823         272 KNLPR-LT--NGFG-----------INTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQV-TRLTFSGGGNSNPVWSPD  336 (425)
T ss_pred             Cccee-cc--cCCc-----------cccCccCCCCCCEEEEEeCCCCCcceEEECCCCCce-eEeeccCCCCcCccCCCC
Confidence            55222 21  1110           112346899999886554 4444  77777765544 222211111125568885


Q ss_pred             CCcEEEEEeCCCe--EEEEeCCCCeeEEEeecccccEEEEEEcCCCCeEEEE
Q 021247          212 DPRVLFSASDDTH--VHMYDAEGKSLVTAMSGHASWVLSVDASPDGAAITTG  261 (315)
Q Consensus       212 ~~~~l~s~~~d~~--i~~wd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~  261 (315)
                      +..+++....+|.  |.+.|+.++.-...+. +......-.+.|+++.+...
T Consensus       337 G~~i~~~~~~~g~~~i~~~~~~~~~~~~~lt-~~~~~e~ps~~~ng~~i~~~  387 (425)
T COG0823         337 GDKIVFESSSGGQWDIDKNDLASGGKIRILT-STYLNESPSWAPNGRMIMFS  387 (425)
T ss_pred             CCEEEEEeccCCceeeEEeccCCCCcEEEcc-ccccCCCCCcCCCCceEEEe
Confidence            5544444433444  5566665443222222 12222234556666655433

>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals

Probab=97.91  E-value=0.0043  Score=53.31  Aligned_cols=235  Identities=19%  Similarity=0.172  Sum_probs=117.9

Q ss_pred             ceEEEEeCCCCCEEEEeeCCCeEEEEECCCCceeEEeeCCcccEEEEEECCCCCeEEEEecCCCeEEEEecCC---ccee
Q 021247           62 GVVSVAAHPSGIIAASASLDSFVRVFDVDTNASIATLEASPSEVWQMQFDPKGTTLAVAGGGSASVKLWDTAT---WNLI  138 (315)
Q Consensus        62 ~v~~~~~~~~g~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~~d~~~---~~~~  138 (315)
                      .|..+++.++...++.+-..|.|-||....++....  ....+-....+.+-       ...+..-.+-|+..   ..+.
T Consensus         3 ~v~~vs~a~~t~Elav~~~~GeVv~~k~~~n~~~~~--~~~~~~~~~~~~~~-------~~~~~~~~l~di~~r~~~~~~   73 (395)
T PF08596_consen    3 SVTHVSFAPETLELAVGLESGEVVLFKFGKNQNYGN--REQPPDLDYNFRRF-------SLNNSPGKLTDISDRAPPSLK   73 (395)
T ss_dssp             -EEEEEEETTTTEEEEEETTS-EEEEEEEE--------------------S---------GGGSS-SEEE-GGG--TT-S
T ss_pred             eEEEEEecCCCceEEEEccCCcEEEEEcccCCCCCc--cCCCcccCcccccc-------cccCCCcceEEehhhCCcccc
Confidence            578899999988999999999999988765433220  00001111111110       01111122223321   0000


Q ss_pred             eeecCCCCCCCCCC-ccCCCCcceEEEEECCCCCEEEEecCCCcEEEEEcccceeeeee--cC------CccceEEEEEc
Q 021247          139 ATLSIPRPEGLKPT-DKSSSKKFVLSVAWSPDGRRIACGSMDGTISVFDVTRAKFLHHL--EG------HFMPVRSLVYS  209 (315)
Q Consensus       139 ~~~~~~~~~~~~~~-~~~~~~~~i~~~~~~~~~~~l~~~s~dg~i~i~d~~~~~~~~~~--~~------~~~~v~~~~~~  209 (315)
                              +++.|. .....+..|++++.+ +=.+++.|+++|.+.+.|+|....+..-  ..      ....++++.|.
T Consensus        74 --------~gf~P~~l~~~~~g~vtal~~S-~iGFvaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ieF~  144 (395)
T PF08596_consen   74 --------EGFLPLTLLDAKQGPVTALKNS-DIGFVAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSIEFS  144 (395)
T ss_dssp             --------EEEEEEEEE---S-SEEEEEE--BTSEEEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS----EEEEEEE
T ss_pred             --------cccCchhheeccCCcEeEEecC-CCcEEEEEecCCcEEEEECCCCeEEeeccccccccccccccCeeEEEEE
Confidence                    000000 011124568999987 4558999999999999999888776542  22      23356777775


Q ss_pred             C----CCC---cEEEEEeCCCeEEEEeCCC---Cee----EEEeecccccEEEEE-EcCC-C------------------
Q 021247          210 P----VDP---RVLFSASDDTHVHMYDAEG---KSL----VTAMSGHASWVLSVD-ASPD-G------------------  255 (315)
Q Consensus       210 ~----~~~---~~l~s~~~d~~i~~wd~~~---~~~----~~~~~~~~~~i~~~~-~~~~-~------------------  255 (315)
                      .    .++   -+++.|...|.+.+|.+..   +..    ......+.+.|..+. ++.+ |                  
T Consensus       145 vm~~~~D~ySSi~L~vGTn~G~v~~fkIlp~~~g~f~v~~~~~~~~~~~~i~~I~~i~~~~G~~a~At~~~~~~l~~g~~  224 (395)
T PF08596_consen  145 VMTLGGDGYSSICLLVGTNSGNVLTFKILPSSNGRFSVQFAGATTNHDSPILSIIPINADTGESALATISAMQGLSKGIS  224 (395)
T ss_dssp             EEE-TTSSSEEEEEEEEETTSEEEEEEEEE-GGG-EEEEEEEEE--SS----EEEEEETTT--B-B-BHHHHHGGGGT--
T ss_pred             EEecCCCcccceEEEEEeCCCCEEEEEEecCCCCceEEEEeeccccCCCceEEEEEEECCCCCcccCchhHhhccccCCC
Confidence            2    122   3688999999999997541   211    111224556665554 3221 1                  


Q ss_pred             -CeEEEEeCCCcEEEEecCccceehcccccccceEEEEE-----eeCCCEEEEEeCCCcEEEeec
Q 021247          256 -AAITTGSSDRTVKLWDLNMRAAMQSMTNHTDQVWGVSF-----RPLGGRVVSVSDDKSISLYEY  314 (315)
Q Consensus       256 -~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~-----s~~~~~l~s~~~d~~i~i~~~  314 (315)
                       .-++....+..||++...+.+..+......-...++.+     ...+..|++...+|.|++|.+
T Consensus       225 i~g~vVvvSe~~irv~~~~~~k~~~K~~~~~~~~~~~~vv~~~~~~~~~~Lv~l~~~G~i~i~SL  289 (395)
T PF08596_consen  225 IPGYVVVVSESDIRVFKPPKSKGAHKSFDDPFLCSSASVVPTISRNGGYCLVCLFNNGSIRIYSL  289 (395)
T ss_dssp             --EEEEEE-SSEEEEE-TT---EEEEE-SS-EEEEEEEEEEEE-EEEEEEEEEEETTSEEEEEET
T ss_pred             cCcEEEEEcccceEEEeCCCCcccceeeccccccceEEEEeecccCCceEEEEEECCCcEEEEEC
Confidence             12444556778999998876554433222223344445     335678999999999999986

The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.

>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]

Probab=97.83  E-value=0.0006  Score=60.33  Aligned_cols=151  Identities=15%  Similarity=0.118  Sum_probs=97.3

Q ss_pred             cccceEEEEeCCCCCEEEEeeCCCeEEEEECCCCceeE-EeeCCcccEEEEEECCCCCeEEEEecCCCeEEEEecCCcce
Q 021247           59 HCLGVVSVAAHPSGIIAASASLDSFVRVFDVDTNASIA-TLEASPSEVWQMQFDPKGTTLAVAGGGSASVKLWDTATWNL  137 (315)
Q Consensus        59 h~~~v~~~~~~~~g~~l~s~~~d~~i~~w~~~~~~~~~-~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~~d~~~~~~  137 (315)
                      +..-+.--+++..+.+++-|+.-|.+++++-..+.... ........+.....++.. +++++|+..|.|.++-+.....
T Consensus        32 ~~~~v~lTc~dst~~~l~~GsS~G~lyl~~R~~~~~~~~~~~~~~~~~~~~~vs~~e-~lvAagt~~g~V~v~ql~~~~p  110 (726)
T KOG3621|consen   32 FPARVKLTCVDATEEYLAMGSSAGSVYLYNRHTGEMRKLKNEGATGITCVRSVSSVE-YLVAAGTASGRVSVFQLNKELP  110 (726)
T ss_pred             CcceEEEEEeecCCceEEEecccceEEEEecCchhhhcccccCccceEEEEEecchh-HhhhhhcCCceEEeehhhccCC
Confidence            33445555677788999999999999999987765432 333344556666777764 4667788889999887654211


Q ss_pred             eeeecCCCCCCCCCCccCCCCcceEEEEECCCCCEEEEecCCCcEEEEEcccce----eeeeecCCccceEEEEEcCCCC
Q 021247          138 IATLSIPRPEGLKPTDKSSSKKFVLSVAWSPDGRRIACGSMDGTISVFDVTRAK----FLHHLEGHFMPVRSLVYSPVDP  213 (315)
Q Consensus       138 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~s~dg~i~i~d~~~~~----~~~~~~~~~~~v~~~~~~~~~~  213 (315)
                      .       ...........|+..|++++|++++..+++|...|.|.+-.+....    ..+.+.....+|..+...  +.
T Consensus       111 ~-------~~~~~t~~d~~~~~rVTal~Ws~~~~k~ysGD~~Gkv~~~~L~s~~~~~~~~q~il~~ds~IVQlD~~--q~  181 (726)
T KOG3621|consen  111 R-------DLDYVTPCDKSHKCRVTALEWSKNGMKLYSGDSQGKVVLTELDSRQAFLSKSQEILSEDSEIVQLDYL--QS  181 (726)
T ss_pred             C-------cceeeccccccCCceEEEEEecccccEEeecCCCceEEEEEechhhhhccccceeeccCcceEEeecc--cc
Confidence            1       1000111123367889999999999999999999999988876521    112222334566666654  34


Q ss_pred             cEEEEE
Q 021247          214 RVLFSA  219 (315)
Q Consensus       214 ~~l~s~  219 (315)
                      .+|++.
T Consensus       182 ~LLVSt  187 (726)
T KOG3621|consen  182 YLLVST  187 (726)
T ss_pred             eehHhh
Confidence            444443

>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1

Probab=97.82  E-value=0.013  Score=48.50  Aligned_cols=254  Identities=17%  Similarity=0.176  Sum_probs=141.6

Q ss_pred             CcEEEEcCCCCcceeeccccccceEEEEeCCCCCEEEEee----------CCCeEEEEECCCCceeEEeeCCcc------
Q 021247           40 ETVKLWRPDDMQLERTNTGHCLGVVSVAAHPSGIIAASAS----------LDSFVRVFDVDTNASIATLEASPS------  103 (315)
Q Consensus        40 ~~v~~w~~~~~~~~~~~~~h~~~v~~~~~~~~g~~l~s~~----------~d~~i~~w~~~~~~~~~~~~~~~~------  103 (315)
                      +.+.++|.++.+++-.++.-  -.-.+..+|+|+.+.+++          ..-.|.+||..+......+.....      
T Consensus        17 ~rv~viD~d~~k~lGmi~~g--~~~~~~~spdgk~~y~a~T~~sR~~rG~RtDvv~~~D~~TL~~~~EI~iP~k~R~~~~   94 (342)
T PF06433_consen   17 SRVYVIDADSGKLLGMIDTG--FLGNVALSPDGKTIYVAETFYSRGTRGERTDVVEIWDTQTLSPTGEIEIPPKPRAQVV   94 (342)
T ss_dssp             EEEEEEETTTTEEEEEEEEE--SSEEEEE-TTSSEEEEEEEEEEETTEEEEEEEEEEEETTTTEEEEEEEETTS-B--BS
T ss_pred             ceEEEEECCCCcEEEEeecc--cCCceeECCCCCEEEEEEEEEeccccccceeEEEEEecCcCcccceEecCCcchheec
Confidence            47889998888876665432  222355789998877642          233589999999877665543332      


Q ss_pred             -cEEEEEECCCCCeEEEEec-CCCeEEEEecCCcceeeeecCCCCCCCCCCccCCCCcceEEEEECCC-CCEEEEecCCC
Q 021247          104 -EVWQMQFDPKGTTLAVAGG-GSASVKLWDTATWNLIATLSIPRPEGLKPTDKSSSKKFVLSVAWSPD-GRRIACGSMDG  180 (315)
Q Consensus       104 -~v~~~~~~~~~~~~~~~~~-~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-~~~l~~~s~dg  180 (315)
                       .....+++++++.+++.-- =...|.|.|+...+.+..+..|..                 .-..|. .+.|.+-+.||
T Consensus        95 ~~~~~~~ls~dgk~~~V~N~TPa~SVtVVDl~~~kvv~ei~~PGC-----------------~~iyP~~~~~F~~lC~DG  157 (342)
T PF06433_consen   95 PYKNMFALSADGKFLYVQNFTPATSVTVVDLAAKKVVGEIDTPGC-----------------WLIYPSGNRGFSMLCGDG  157 (342)
T ss_dssp             --GGGEEE-TTSSEEEEEEESSSEEEEEEETTTTEEEEEEEGTSE-----------------EEEEEEETTEEEEEETTS
T ss_pred             ccccceEEccCCcEEEEEccCCCCeEEEEECCCCceeeeecCCCE-----------------EEEEecCCCceEEEecCC
Confidence             1223456777776655432 234678888888887777655432                 112232 24566777889


Q ss_pred             cEEEEEcc-cceeeeee----cCCccceE-EEEEcCCCCcEEEEEeCCCeEEEEeCCCCee--EEEeec------cccc-
Q 021247          181 TISVFDVT-RAKFLHHL----EGHFMPVR-SLVYSPVDPRVLFSASDDTHVHMYDAEGKSL--VTAMSG------HASW-  245 (315)
Q Consensus       181 ~i~i~d~~-~~~~~~~~----~~~~~~v~-~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~--~~~~~~------~~~~-  245 (315)
                      ++....+. .++.....    .....++. .-.+.. .+..++--+-+|.|+--|+.....  .....-      ..+| 
T Consensus       158 sl~~v~Ld~~Gk~~~~~t~~F~~~~dp~f~~~~~~~-~~~~~~F~Sy~G~v~~~dlsg~~~~~~~~~~~~t~~e~~~~Wr  236 (342)
T PF06433_consen  158 SLLTVTLDADGKEAQKSTKVFDPDDDPLFEHPAYSR-DGGRLYFVSYEGNVYSADLSGDSAKFGKPWSLLTDAEKADGWR  236 (342)
T ss_dssp             CEEEEEETSTSSEEEEEEEESSTTTS-B-S--EEET-TTTEEEEEBTTSEEEEEEETTSSEEEEEEEESS-HHHHHTTEE
T ss_pred             ceEEEEECCCCCEeEeeccccCCCCcccccccceEC-CCCeEEEEecCCEEEEEeccCCcccccCcccccCccccccCcC
Confidence            88888875 44443221    11111111 112222 222344456677777777665432  111110      0111 


Q ss_pred             ---EEEEEEcCCCCeEEE---EeCC-----C--cEEEEecCccceehcccccccceEEEEEeeCCC-EEEEEe-CCCcEE
Q 021247          246 ---VLSVDASPDGAAITT---GSSD-----R--TVKLWDLNMRAAMQSMTNHTDQVWGVSFRPLGG-RVVSVS-DDKSIS  310 (315)
Q Consensus       246 ---i~~~~~~~~~~~l~s---~~~d-----~--~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~-~l~s~~-~d~~i~  310 (315)
                         -.-+++++....|.+   .+.+     +  .|-++|+.+++.+..+.. ..++.++..+.+.+ +|++.+ .++.+.
T Consensus       237 PGG~Q~~A~~~~~~rlyvLMh~g~~gsHKdpgteVWv~D~~t~krv~Ri~l-~~~~~Si~Vsqd~~P~L~~~~~~~~~l~  315 (342)
T PF06433_consen  237 PGGWQLIAYHAASGRLYVLMHQGGEGSHKDPGTEVWVYDLKTHKRVARIPL-EHPIDSIAVSQDDKPLLYALSAGDGTLD  315 (342)
T ss_dssp             E-SSS-EEEETTTTEEEEEEEE--TT-TTS-EEEEEEEETTTTEEEEEEEE-EEEESEEEEESSSS-EEEEEETTTTEEE
T ss_pred             CcceeeeeeccccCeEEEEecCCCCCCccCCceEEEEEECCCCeEEEEEeC-CCccceEEEccCCCcEEEEEcCCCCeEE
Confidence               123566654433322   1122     2  466778888888888764 24677899998765 666654 578999


Q ss_pred             Eeec
Q 021247          311 LYEY  314 (315)
Q Consensus       311 i~~~  314 (315)
                      +||.
T Consensus       316 v~D~  319 (342)
T PF06433_consen  316 VYDA  319 (342)
T ss_dssp             EEET
T ss_pred             EEeC
Confidence            9984

4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....

>smart00320 WD40 WD40 repeats

Probab=97.81  E-value=4.3e-05  Score=41.11  Aligned_cols=37  Identities=35%  Similarity=0.598  Sum_probs=31.9

Q ss_pred             eehcccccccceEEEEEeeCCCEEEEEeCCCcEEEee
Q 021247          277 AMQSMTNHTDQVWGVSFRPLGGRVVSVSDDKSISLYE  313 (315)
Q Consensus       277 ~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~i~i~~  313 (315)
                      ....+..|...++++.|++++..+++++.|+.+++|+
T Consensus         4 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~   40 (40)
T smart00320        4 LLKTLKGHTGPVTSVAFSPDGKYLASASDDGTIKLWD   40 (40)
T ss_pred             EEEEEEecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence            3444557788999999999999999999999999996

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.

>smart00320 WD40 WD40 repeats

Probab=97.81  E-value=9.8e-05  Score=39.59  Aligned_cols=37  Identities=46%  Similarity=0.767  Sum_probs=32.2

Q ss_pred             eEEEeecccccEEEEEEcCCCCeEEEEeCCCcEEEEe
Q 021247          235 LVTAMSGHASWVLSVDASPDGAAITTGSSDRTVKLWD  271 (315)
Q Consensus       235 ~~~~~~~~~~~i~~~~~~~~~~~l~s~~~d~~i~iwd  271 (315)
                      ....+..|...|.++.+++.+..+++++.|+.+++|+
T Consensus         4 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~   40 (40)
T smart00320        4 LLKTLKGHTGPVTSVAFSPDGKYLASASDDGTIKLWD   40 (40)
T ss_pred             EEEEEEecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence            4455567888999999999999999999999999996

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.

>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]

Probab=97.74  E-value=0.00028  Score=62.31  Aligned_cols=103  Identities=16%  Similarity=0.172  Sum_probs=78.5

Q ss_pred             CCcEEEEEeCCCeEEEEeCCCCeeEEEee-cccccEEEEEEcCCCCeEEEEeCCCcEEEEecCccceehc------cccc
Q 021247          212 DPRVLFSASDDTHVHMYDAEGKSLVTAMS-GHASWVLSVDASPDGAAITTGSSDRTVKLWDLNMRAAMQS------MTNH  284 (315)
Q Consensus       212 ~~~~l~s~~~d~~i~~wd~~~~~~~~~~~-~~~~~i~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~------~~~~  284 (315)
                      ...+++.|+.-|.+++|+...+.....-. +..+.+..+.++++..++|.|+..|.|.++.++.+.+-..      -..|
T Consensus        44 t~~~l~~GsS~G~lyl~~R~~~~~~~~~~~~~~~~~~~~~vs~~e~lvAagt~~g~V~v~ql~~~~p~~~~~~t~~d~~~  123 (726)
T KOG3621|consen   44 TEEYLAMGSSAGSVYLYNRHTGEMRKLKNEGATGITCVRSVSSVEYLVAAGTASGRVSVFQLNKELPRDLDYVTPCDKSH  123 (726)
T ss_pred             CCceEEEecccceEEEEecCchhhhcccccCccceEEEEEecchhHhhhhhcCCceEEeehhhccCCCcceeeccccccC
Confidence            56789999999999999976654433322 2334455677899999999999999999999876432111      1236


Q ss_pred             ccceEEEEEeeCCCEEEEEeCCCcEEEeec
Q 021247          285 TDQVWGVSFRPLGGRVVSVSDDKSISLYEY  314 (315)
Q Consensus       285 ~~~v~~~~~s~~~~~l~s~~~d~~i~i~~~  314 (315)
                      ...|+++.|++|+..|++|...|+|.+-.+
T Consensus       124 ~~rVTal~Ws~~~~k~ysGD~~Gkv~~~~L  153 (726)
T KOG3621|consen  124 KCRVTALEWSKNGMKLYSGDSQGKVVLTEL  153 (726)
T ss_pred             CceEEEEEecccccEEeecCCCceEEEEEe
Confidence            788999999999999999999999977554

>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]

Probab=97.73  E-value=0.019  Score=47.59  Aligned_cols=224  Identities=16%  Similarity=0.137  Sum_probs=127.5

Q ss_pred             eCCCCC-EEEEeeCCCeEEEEECCCCceeEEeeCCcccEEEEEECCCCCeEEEEecCCCeEEEEecCCcceeeeecCCCC
Q 021247           68 AHPSGI-IAASASLDSFVRVFDVDTNASIATLEASPSEVWQMQFDPKGTTLAVAGGGSASVKLWDTATWNLIATLSIPRP  146 (315)
Q Consensus        68 ~~~~g~-~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~  146 (315)
                      |.++.. ++.+--..+.|+-|+..++... .+............+..+. ++ ++  +..+.+++..++..+..+.....
T Consensus        32 w~~~~~~L~w~DI~~~~i~r~~~~~g~~~-~~~~p~~~~~~~~~d~~g~-Lv-~~--~~g~~~~~~~~~~~~t~~~~~~~  106 (307)
T COG3386          32 WDPDRGALLWVDILGGRIHRLDPETGKKR-VFPSPGGFSSGALIDAGGR-LI-AC--EHGVRLLDPDTGGKITLLAEPED  106 (307)
T ss_pred             CcCCCCEEEEEeCCCCeEEEecCCcCceE-EEECCCCcccceeecCCCe-EE-EE--ccccEEEeccCCceeEEeccccC
Confidence            444444 5556666778888888765432 2222222223333444433 33 32  23455566554444222211111


Q ss_pred             CCCCCCccCCCCcceEEEEECCCCCEEEEecC-----------CCcEEEEEcccceeeeeecCCccceEEEEEcCCCCcE
Q 021247          147 EGLKPTDKSSSKKFVLSVAWSPDGRRIACGSM-----------DGTISVFDVTRAKFLHHLEGHFMPVRSLVYSPVDPRV  215 (315)
Q Consensus       147 ~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~s~-----------dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~  215 (315)
                       +       ......+.+...|+|.+-+....           -|.++.+|. .+.....+..+-...+.++|+|++..+
T Consensus       107 -~-------~~~~r~ND~~v~pdG~~wfgt~~~~~~~~~~~~~~G~lyr~~p-~g~~~~l~~~~~~~~NGla~SpDg~tl  177 (307)
T COG3386         107 -G-------LPLNRPNDGVVDPDGRIWFGDMGYFDLGKSEERPTGSLYRVDP-DGGVVRLLDDDLTIPNGLAFSPDGKTL  177 (307)
T ss_pred             -C-------CCcCCCCceeEcCCCCEEEeCCCccccCccccCCcceEEEEcC-CCCEEEeecCcEEecCceEECCCCCEE
Confidence             1       11123456777888876554322           133555554 355555555555666899999977667


Q ss_pred             EEEEeCCCeEEEEeCCC--C----e-eEEEeecccccEEEEEEcCCCCeEEEEeCCC-cEEEEecCccceehcccccccc
Q 021247          216 LFSASDDTHVHMYDAEG--K----S-LVTAMSGHASWVLSVDASPDGAAITTGSSDR-TVKLWDLNMRAAMQSMTNHTDQ  287 (315)
Q Consensus       216 l~s~~~d~~i~~wd~~~--~----~-~~~~~~~~~~~i~~~~~~~~~~~l~s~~~d~-~i~iwd~~~~~~~~~~~~~~~~  287 (315)
                      +++=+..+.|+.|+...  +    . .........+..-.++.+.+|.+.+++..+| .|.+|+.+ ++++..+.-....
T Consensus       178 y~aDT~~~~i~r~~~d~~~g~~~~~~~~~~~~~~~G~PDG~~vDadG~lw~~a~~~g~~v~~~~pd-G~l~~~i~lP~~~  256 (307)
T COG3386         178 YVADTPANRIHRYDLDPATGPIGGRRGFVDFDEEPGLPDGMAVDADGNLWVAAVWGGGRVVRFNPD-GKLLGEIKLPVKR  256 (307)
T ss_pred             EEEeCCCCeEEEEecCcccCccCCcceEEEccCCCCCCCceEEeCCCCEEEecccCCceEEEECCC-CcEEEEEECCCCC
Confidence            77777778999887652  1    1 1112222345556677888888775555554 89999998 8888777766567


Q ss_pred             eEEEEEe-eCCCEEEEEeCC
Q 021247          288 VWGVSFR-PLGGRVVSVSDD  306 (315)
Q Consensus       288 v~~~~~s-~~~~~l~s~~~d  306 (315)
                      +++++|- |+.+.|+..+..
T Consensus       257 ~t~~~FgG~~~~~L~iTs~~  276 (307)
T COG3386         257 PTNPAFGGPDLNTLYITSAR  276 (307)
T ss_pred             CccceEeCCCcCEEEEEecC
Confidence            7888876 445666544443

>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.72  E-value=0.0009  Score=57.46  Aligned_cols=140  Identities=15%  Similarity=0.166  Sum_probs=95.4

Q ss_pred             CCCCCEE-EEecCCCcEEEEEcccceeeeeecCCccceEEEEEcCCC------CcEEEEEeCCCeEEEEeCCCCe--eEE
Q 021247          167 SPDGRRI-ACGSMDGTISVFDVTRAKFLHHLEGHFMPVRSLVYSPVD------PRVLFSASDDTHVHMYDAEGKS--LVT  237 (315)
Q Consensus       167 ~~~~~~l-~~~s~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~------~~~l~s~~~d~~i~~wd~~~~~--~~~  237 (315)
                      ..+.+++ ..+..-..++-.|++.|+.+..+.-+.. |.-+.+.|+.      +..-+.|-+|..|.-||++-..  .+.
T Consensus       342 ~~dsnlil~~~~~~~~l~klDIE~GKIVeEWk~~~d-i~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~kl~  420 (644)
T KOG2395|consen  342 RADSNLILMDGGEQDKLYKLDIERGKIVEEWKFEDD-INMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKNKLA  420 (644)
T ss_pred             ccccceEeeCCCCcCcceeeecccceeeeEeeccCC-cceeeccCCcchhcccccccEEeecCCceEEecccccCcceee
Confidence            3445544 4566667899999999999999887765 5666666642      1223456678889999987322  222


Q ss_pred             Eeecc----cccEEEEEEcCCCCeEEEEeCCCcEEEEecCccceehcccccccceEEEEEeeCCCEEEEEeCCCc
Q 021247          238 AMSGH----ASWVLSVDASPDGAAITTGSSDRTVKLWDLNMRAAMQSMTNHTDQVWGVSFRPLGGRVVSVSDDKS  308 (315)
Q Consensus       238 ~~~~~----~~~i~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~  308 (315)
                      ..++|    .....|.+-..+| ++++|+.+|.||+||--.......+++-.++|..|..+.+|++|++.+..-.
T Consensus       421 ~~q~kqy~~k~nFsc~aTT~sG-~IvvgS~~GdIRLYdri~~~AKTAlPgLG~~I~hVdvtadGKwil~Tc~tyL  494 (644)
T KOG2395|consen  421 VVQSKQYSTKNNFSCFATTESG-YIVVGSLKGDIRLYDRIGRRAKTALPGLGDAIKHVDVTADGKWILATCKTYL  494 (644)
T ss_pred             eeeccccccccccceeeecCCc-eEEEeecCCcEEeehhhhhhhhhcccccCCceeeEEeeccCcEEEEecccEE
Confidence            22222    1224455555555 6899999999999997433333446778899999999999999988776443

>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins

Probab=97.68  E-value=0.0025  Score=58.88  Aligned_cols=142  Identities=15%  Similarity=0.183  Sum_probs=92.7

Q ss_pred             eEEEEecCCCeEEEEecCCcceeeeecCCCCCCCCCCccCCCCcceEEEEEC----C-CCCEEEEecCCCcEEEEEcccc
Q 021247          116 TLAVAGGGSASVKLWDTATWNLIATLSIPRPEGLKPTDKSSSKKFVLSVAWS----P-DGRRIACGSMDGTISVFDVTRA  190 (315)
Q Consensus       116 ~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~----~-~~~~l~~~s~dg~i~i~d~~~~  190 (315)
                      .++........|+-.|+..++.+..+.......            |..++=.    + .....+.|-.++.+..||+|-.
T Consensus       495 mil~~~~~~~~ly~mDLe~GKVV~eW~~~~~~~------------v~~~~p~~K~aqlt~e~tflGls~n~lfriDpR~~  562 (794)
T PF08553_consen  495 MILLDPNNPNKLYKMDLERGKVVEEWKVHDDIP------------VVDIAPDSKFAQLTNEQTFLGLSDNSLFRIDPRLS  562 (794)
T ss_pred             eEeecCCCCCceEEEecCCCcEEEEeecCCCcc------------eeEecccccccccCCCceEEEECCCceEEeccCCC
Confidence            344443456789999999999998886643211            2222211    0 1335566778889999999743


Q ss_pred             --eeeee---ecCCccceEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCeeEEEeecccccEEEEEEcCCCCeEEEEeCCC
Q 021247          191 --KFLHH---LEGHFMPVRSLVYSPVDPRVLFSASDDTHVHMYDAEGKSLVTAMSGHASWVLSVDASPDGAAITTGSSDR  265 (315)
Q Consensus       191 --~~~~~---~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~d~  265 (315)
                        +.+..   .........+++-.  +..+++.|+.+|.|++||.-+......+.+-..+|.+|+.+.||+++++.+ +.
T Consensus       563 ~~k~v~~~~k~Y~~~~~Fs~~aTt--~~G~iavgs~~G~IRLyd~~g~~AKT~lp~lG~pI~~iDvt~DGkwilaTc-~t  639 (794)
T PF08553_consen  563 GNKLVDSQSKQYSSKNNFSCFATT--EDGYIAVGSNKGDIRLYDRLGKRAKTALPGLGDPIIGIDVTADGKWILATC-KT  639 (794)
T ss_pred             CCceeeccccccccCCCceEEEec--CCceEEEEeCCCcEEeecccchhhhhcCCCCCCCeeEEEecCCCcEEEEee-cc
Confidence              22211   11223345566544  456899999999999999654444444556678999999999999987655 45


Q ss_pred             cEEEEec
Q 021247          266 TVKLWDL  272 (315)
Q Consensus       266 ~i~iwd~  272 (315)
                      .+.+++.
T Consensus       640 yLlLi~t  646 (794)
T PF08553_consen  640 YLLLIDT  646 (794)
T ss_pred             eEEEEEE
Confidence            6777764

Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].

>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit

Probab=97.67  E-value=0.026  Score=47.51  Aligned_cols=212  Identities=17%  Similarity=0.247  Sum_probs=115.2

Q ss_pred             eEEEEECCCCceeEEeeCCcc-cEE---EEEECCCC---CeEEEEecC----------CCeEEEEecCCc----ceeeee
Q 021247           83 FVRVFDVDTNASIATLEASPS-EVW---QMQFDPKG---TTLAVAGGG----------SASVKLWDTATW----NLIATL  141 (315)
Q Consensus        83 ~i~~w~~~~~~~~~~~~~~~~-~v~---~~~~~~~~---~~~~~~~~~----------d~~i~~~d~~~~----~~~~~~  141 (315)
                      .|++.|..+.+.+..+...+. .+.   .+.+..+.   ..+++.|..          .|.|.++++...    ..+..+
T Consensus         3 ~i~l~d~~~~~~~~~~~l~~~E~~~s~~~~~l~~~~~~~~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l~~i   82 (321)
T PF03178_consen    3 SIRLVDPTTFEVLDSFELEPNEHVTSLCSVKLKGDSTGKKEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKLKLI   82 (321)
T ss_dssp             EEEEEETTTSSEEEEEEEETTEEEEEEEEEEETTS---SSEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EEEEE
T ss_pred             EEEEEeCCCCeEEEEEECCCCceEEEEEEEEEcCccccccCEEEEEecccccccccccCcEEEEEEEEcccccceEEEEE
Confidence            578888877776665544332 233   33344321   333343321          288999998773    111111


Q ss_pred             cCCCCCCCCCCccCCCCcceEEEEECCCCCEEEEecCCCcEEEEEcccce-eeeeecC-CccceEEEEEcCCCCcEEEEE
Q 021247          142 SIPRPEGLKPTDKSSSKKFVLSVAWSPDGRRIACGSMDGTISVFDVTRAK-FLHHLEG-HFMPVRSLVYSPVDPRVLFSA  219 (315)
Q Consensus       142 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~s~dg~i~i~d~~~~~-~~~~~~~-~~~~v~~~~~~~~~~~~l~s~  219 (315)
                      .           ....+..|.+++-. +++ |+++. ++.|.+|++...+ ....... ....+.++...   +.+++.|
T Consensus        83 ~-----------~~~~~g~V~ai~~~-~~~-lv~~~-g~~l~v~~l~~~~~l~~~~~~~~~~~i~sl~~~---~~~I~vg  145 (321)
T PF03178_consen   83 H-----------STEVKGPVTAICSF-NGR-LVVAV-GNKLYVYDLDNSKTLLKKAFYDSPFYITSLSVF---KNYILVG  145 (321)
T ss_dssp             E-----------EEEESS-EEEEEEE-TTE-EEEEE-TTEEEEEEEETTSSEEEEEEE-BSSSEEEEEEE---TTEEEEE
T ss_pred             E-----------EEeecCcceEhhhh-CCE-EEEee-cCEEEEEEccCcccchhhheecceEEEEEEecc---ccEEEEE
Confidence            0           01123347777665 344 44443 4789999997766 4332221 22356666654   3478888


Q ss_pred             eCCCeEEEE--eCCCCeeEEEe-ecccccEEEEEEcCCCCeEEEEeCCCcEEEEecCc-------cc-eehcc-c-cccc
Q 021247          220 SDDTHVHMY--DAEGKSLVTAM-SGHASWVLSVDASPDGAAITTGSSDRTVKLWDLNM-------RA-AMQSM-T-NHTD  286 (315)
Q Consensus       220 ~~d~~i~~w--d~~~~~~~~~~-~~~~~~i~~~~~~~~~~~l~s~~~d~~i~iwd~~~-------~~-~~~~~-~-~~~~  286 (315)
                      .....+.++  +.+..++...- .....+++++.+-+++..++.+..+|.+.++..+.       +. .+... . ...+
T Consensus       146 D~~~sv~~~~~~~~~~~l~~va~d~~~~~v~~~~~l~d~~~~i~~D~~gnl~~l~~~~~~~~~~~~~~~L~~~~~f~lg~  225 (321)
T PF03178_consen  146 DAMKSVSLLRYDEENNKLILVARDYQPRWVTAAEFLVDEDTIIVGDKDGNLFVLRYNPEIPNSRDGDPKLERISSFHLGD  225 (321)
T ss_dssp             ESSSSEEEEEEETTTE-EEEEEEESS-BEEEEEEEE-SSSEEEEEETTSEEEEEEE-SS-SSTTTTTTBEEEEEEEE-SS
T ss_pred             EcccCEEEEEEEccCCEEEEEEecCCCccEEEEEEecCCcEEEEEcCCCeEEEEEECCCCcccccccccceeEEEEECCC
Confidence            877777765  55333332221 23356688888886667999999999999998763       11 22211 1 1235


Q ss_pred             ceEEE---EEee--CC------CEEEEEeCCCcEEE
Q 021247          287 QVWGV---SFRP--LG------GRVVSVSDDKSISL  311 (315)
Q Consensus       287 ~v~~~---~~s~--~~------~~l~s~~~d~~i~i  311 (315)
                      .|+++   .+.|  .+      ..++.++.+|.|-.
T Consensus       226 ~v~~~~~~~l~~~~~~~~~~~~~~i~~~T~~G~Ig~  261 (321)
T PF03178_consen  226 IVNSFRRGSLIPRSGSSESPNRPQILYGTVDGSIGV  261 (321)
T ss_dssp             -EEEEEE--SS--SSSS-TTEEEEEEEEETTS-EEE
T ss_pred             ccceEEEEEeeecCCCCcccccceEEEEecCCEEEE
Confidence            67776   5555  22      24888889998873

CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....

>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region

Probab=97.65  E-value=0.0078  Score=41.03  Aligned_cols=98  Identities=17%  Similarity=0.286  Sum_probs=61.4

Q ss_pred             EECCCCCeEEEEecCCCeEEEEecCCcceeeeecCCCCCCCCCCccCCCCcceEEEEECCCCCEEEEecCCCcEEEEEcc
Q 021247          109 QFDPKGTTLAVAGGGSASVKLWDTATWNLIATLSIPRPEGLKPTDKSSSKKFVLSVAWSPDGRRIACGSMDGTISVFDVT  188 (315)
Q Consensus       109 ~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~s~dg~i~i~d~~  188 (315)
                      .|..+|..-+++|+.|..|++|+-.  +.+..+..              ...+++++-... ..|+.+..+|+|-+|+-.
T Consensus         9 d~d~dg~~eLlvGs~D~~IRvf~~~--e~~~Ei~e--------------~~~v~~L~~~~~-~~F~Y~l~NGTVGvY~~~   71 (111)
T PF14783_consen    9 DFDGDGENELLVGSDDFEIRVFKGD--EIVAEITE--------------TDKVTSLCSLGG-GRFAYALANGTVGVYDRS   71 (111)
T ss_pred             ecCCCCcceEEEecCCcEEEEEeCC--cEEEEEec--------------ccceEEEEEcCC-CEEEEEecCCEEEEEeCc
Confidence            3455566667889999999999864  34444422              223667776655 678999999999999864


Q ss_pred             cceeeeeecCCccceEEEEEcCC---CCcEEEEEeCCCeEE
Q 021247          189 RAKFLHHLEGHFMPVRSLVYSPV---DPRVLFSASDDTHVH  226 (315)
Q Consensus       189 ~~~~~~~~~~~~~~v~~~~~~~~---~~~~l~s~~~d~~i~  226 (315)
                      ......+ ..  ..+.++.+...   +-.-|++|-.+|.|-
T Consensus        72 ~RlWRiK-SK--~~~~~~~~~D~~gdG~~eLI~GwsnGkve  109 (111)
T PF14783_consen   72 QRLWRIK-SK--NQVTSMAFYDINGDGVPELIVGWSNGKVE  109 (111)
T ss_pred             ceeeeec-cC--CCeEEEEEEcCCCCCceEEEEEecCCeEE
Confidence            3332222 11  23455554432   234678888887763

>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=97.65  E-value=0.017  Score=44.82  Aligned_cols=202  Identities=17%  Similarity=0.212  Sum_probs=108.8

Q ss_pred             CCeEEEEECCCCceeE-EeeCCcccEEEEEECCCC--CeEEEEecCCCeEEEEecC--CcceeeeecCCCCCCCCCCccC
Q 021247           81 DSFVRVFDVDTNASIA-TLEASPSEVWQMQFDPKG--TTLAVAGGGSASVKLWDTA--TWNLIATLSIPRPEGLKPTDKS  155 (315)
Q Consensus        81 d~~i~~w~~~~~~~~~-~~~~~~~~v~~~~~~~~~--~~~~~~~~~d~~i~~~d~~--~~~~~~~~~~~~~~~~~~~~~~  155 (315)
                      .+.|.-||...++..+ +++..+  ..++.+--.+  ..+++.++..-.|.-||..  ..+...++.--.+        .
T Consensus        36 ag~v~r~D~~qn~v~ra~ie~p~--~ag~ilpv~~~~q~~~v~~G~kf~i~nwd~~~~~a~v~~t~~ev~~--------d  105 (310)
T KOG4499|consen   36 AGEVHRYDIEQNKVYRAKIEGPP--SAGFILPVEGGPQEFAVGCGSKFVIVNWDGVSESAKVYRTLFEVQP--------D  105 (310)
T ss_pred             cCceehhhhhhhheEEEEEecCc--ceeEEEEecCCCceEEEeecceEEEEEcccccceeeeeeeccccCc--------h
Confidence            4456668887765433 333322  2222222111  2344445544455668743  2223332210000        0


Q ss_pred             CCCcceEEEEECCCCCEEEEecC-C---------CcEEEEEcccceeeeeecCCccceEEEEEcCCCCcEEEEEeCCCeE
Q 021247          156 SSKKFVLSVAWSPDGRRIACGSM-D---------GTISVFDVTRAKFLHHLEGHFMPVRSLVYSPVDPRVLFSASDDTHV  225 (315)
Q Consensus       156 ~~~~~i~~~~~~~~~~~l~~~s~-d---------g~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i  225 (315)
                      ..+.+.+.-..+|+|++++ |.+ |         |.++.|-+..  .+..+...-...+.++|+.+...+.+.-+.+-.|
T Consensus       106 ~kknR~NDgkvdP~Gryy~-GtMad~~~~le~~~g~Ly~~~~~h--~v~~i~~~v~IsNgl~Wd~d~K~fY~iDsln~~V  182 (310)
T KOG4499|consen  106 RKKNRLNDGKVDPDGRYYG-GTMADFGDDLEPIGGELYSWLAGH--QVELIWNCVGISNGLAWDSDAKKFYYIDSLNYEV  182 (310)
T ss_pred             HHhcccccCccCCCCceee-eeeccccccccccccEEEEeccCC--CceeeehhccCCccccccccCcEEEEEccCceEE
Confidence            1122345566789998843 432 1         2233332211  1111111222345778886555566677778888


Q ss_pred             EEEe--CCCCe-----eEEEeec----ccccEEEEEEcCCCCeEEEEeCCCcEEEEecCccceehcccccccceEEEEEe
Q 021247          226 HMYD--AEGKS-----LVTAMSG----HASWVLSVDASPDGAAITTGSSDRTVKLWDLNMRAAMQSMTNHTDQVWGVSFR  294 (315)
Q Consensus       226 ~~wd--~~~~~-----~~~~~~~----~~~~i~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s  294 (315)
                      .-||  ..++.     .+..+..    .....-.++++.+|.+.++.-..++|...|..+++.+.++.-...++++++|-
T Consensus       183 ~a~dyd~~tG~~snr~~i~dlrk~~~~e~~~PDGm~ID~eG~L~Va~~ng~~V~~~dp~tGK~L~eiklPt~qitsccFg  262 (310)
T KOG4499|consen  183 DAYDYDCPTGDLSNRKVIFDLRKSQPFESLEPDGMTIDTEGNLYVATFNGGTVQKVDPTTGKILLEIKLPTPQITSCCFG  262 (310)
T ss_pred             eeeecCCCcccccCcceeEEeccCCCcCCCCCCcceEccCCcEEEEEecCcEEEEECCCCCcEEEEEEcCCCceEEEEec
Confidence            7777  44432     2222221    11112234556678888888888999999999999999988888999999997


Q ss_pred             e
Q 021247          295 P  295 (315)
Q Consensus       295 ~  295 (315)
                      -
T Consensus       263 G  263 (310)
T KOG4499|consen  263 G  263 (310)
T ss_pred             C
Confidence            4

>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]

Probab=97.63  E-value=0.00011  Score=66.23  Aligned_cols=109  Identities=15%  Similarity=0.251  Sum_probs=81.0

Q ss_pred             EEEEEcCCCCcEEEEEe----CCCeEEEEeCCCCeeEEEeecccccEEEEEEcCCCCeEEEEeCCCcEEEEecCccceeh
Q 021247          204 RSLVYSPVDPRVLFSAS----DDTHVHMYDAEGKSLVTAMSGHASWVLSVDASPDGAAITTGSSDRTVKLWDLNMRAAMQ  279 (315)
Q Consensus       204 ~~~~~~~~~~~~l~s~~----~d~~i~~wd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~  279 (315)
                      +-..|+|..+ +++.++    ..|.+.||--.+.....  ..-.-.+++++|+|..-.|+.|-.-|.+.+|..+..+...
T Consensus        19 ti~SWHPseP-lfAVA~fS~er~GSVtIfadtGEPqr~--Vt~P~hatSLCWHpe~~vLa~gwe~g~~~v~~~~~~e~ht   95 (1416)
T KOG3617|consen   19 TISSWHPSEP-LFAVASFSPERGGSVTIFADTGEPQRD--VTYPVHATSLCWHPEEFVLAQGWEMGVSDVQKTNTTETHT   95 (1416)
T ss_pred             cccccCCCCc-eeEEEEecCCCCceEEEEecCCCCCcc--cccceehhhhccChHHHHHhhccccceeEEEecCCceeee
Confidence            3456788665 444333    45788888543321111  0011225679999998899999999999999998877776


Q ss_pred             cccccccceEEEEEeeCCCEEEEEeCCCcEEEeecC
Q 021247          280 SMTNHTDQVWGVSFRPLGGRVVSVSDDKSISLYEYS  315 (315)
Q Consensus       280 ~~~~~~~~v~~~~~s~~~~~l~s~~~d~~i~i~~~~  315 (315)
                      ....|..++..+.|||+|+.++++..-|.+.+|-++
T Consensus        96 v~~th~a~i~~l~wS~~G~~l~t~d~~g~v~lwr~d  131 (1416)
T KOG3617|consen   96 VVETHPAPIQGLDWSHDGTVLMTLDNPGSVHLWRYD  131 (1416)
T ss_pred             eccCCCCCceeEEecCCCCeEEEcCCCceeEEEEee
Confidence            667899999999999999999999999999999763

>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase

Probab=97.63  E-value=0.026  Score=46.32  Aligned_cols=225  Identities=17%  Similarity=0.190  Sum_probs=119.4

Q ss_pred             cEEEEeeCCCcEEEEcCCC-CcceeeccccccceEEEEeCCCCCEEEEeeCCCeEEEEECCCCceeEEe-----------
Q 021247           31 ALLLTGSLDETVKLWRPDD-MQLERTNTGHCLGVVSVAAHPSGIIAASASLDSFVRVFDVDTNASIATL-----------   98 (315)
Q Consensus        31 ~~l~sgs~d~~v~~w~~~~-~~~~~~~~~h~~~v~~~~~~~~g~~l~s~~~d~~i~~w~~~~~~~~~~~-----------   98 (315)
                      ..|+.|..+| +.+++... .+..+..  +...|..+..-++-+.++.-+ |+.++++++..-......           
T Consensus         8 ~~L~vGt~~G-l~~~~~~~~~~~~~i~--~~~~I~ql~vl~~~~~llvLs-d~~l~~~~L~~l~~~~~~~~~~~~~~~~~   83 (275)
T PF00780_consen    8 DRLLVGTEDG-LYVYDLSDPSKPTRIL--KLSSITQLSVLPELNLLLVLS-DGQLYVYDLDSLEPVSTSAPLAFPKSRSL   83 (275)
T ss_pred             CEEEEEECCC-EEEEEecCCccceeEe--ecceEEEEEEecccCEEEEEc-CCccEEEEchhhccccccccccccccccc
Confidence            4688888888 88888732 2222222  233489999888777666554 599999998765433210           


Q ss_pred             ---eCCcccEEEEE--ECCCCCeEEEEecCCCeEEEEecCCc-----ceeeeecCCCCCCCCCCccCCCCcceEEEEECC
Q 021247           99 ---EASPSEVWQMQ--FDPKGTTLAVAGGGSASVKLWDTATW-----NLIATLSIPRPEGLKPTDKSSSKKFVLSVAWSP  168 (315)
Q Consensus        99 ---~~~~~~v~~~~--~~~~~~~~~~~~~~d~~i~~~d~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~  168 (315)
                         ......+...+  -.+.+...++. .....|.+|.....     +....+.++              ..+..++|. 
T Consensus        84 ~~~~~~~~~v~~f~~~~~~~~~~~L~v-a~kk~i~i~~~~~~~~~f~~~~ke~~lp--------------~~~~~i~~~-  147 (275)
T PF00780_consen   84 PTKLPETKGVSFFAVNGGHEGSRRLCV-AVKKKILIYEWNDPRNSFSKLLKEISLP--------------DPPSSIAFL-  147 (275)
T ss_pred             cccccccCCeeEEeeccccccceEEEE-EECCEEEEEEEECCcccccceeEEEEcC--------------CCcEEEEEe-
Confidence               01112233333  11223223332 33457777766432     334444433              236788888 


Q ss_pred             CCCEEEEecCCCcEEEEEcccceeeeeecCC------------ccceEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCeeE
Q 021247          169 DGRRIACGSMDGTISVFDVTRAKFLHHLEGH------------FMPVRSLVYSPVDPRVLFSASDDTHVHMYDAEGKSLV  236 (315)
Q Consensus       169 ~~~~l~~~s~dg~i~i~d~~~~~~~~~~~~~------------~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~  236 (315)
                       ++.++.|..+ ...+.|+.++....-+...            ..++..+...  ++.+|++-  |..-...|..+....
T Consensus       148 -~~~i~v~~~~-~f~~idl~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~--~~e~Ll~~--~~~g~fv~~~G~~~r  221 (275)
T PF00780_consen  148 -GNKICVGTSK-GFYLIDLNTGSPSELLDPSDSSSSFKSRNSSSKPLGIFQLS--DNEFLLCY--DNIGVFVNKNGEPSR  221 (275)
T ss_pred             -CCEEEEEeCC-ceEEEecCCCCceEEeCccCCcchhhhcccCCCceEEEEeC--CceEEEEe--cceEEEEcCCCCcCc
Confidence             5577777644 5888998866543322111            1233333332  23444432  223333343332211


Q ss_pred             EEeecccccEEEEEEcCCCCeEEEEeCCCcEEEEecCccceehccccc
Q 021247          237 TAMSGHASWVLSVDASPDGAAITTGSSDRTVKLWDLNMRAAMQSMTNH  284 (315)
Q Consensus       237 ~~~~~~~~~i~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~  284 (315)
                      ...-.=...+.++++.  ..+|+..+. +.|.||++.+++.++++...
T Consensus       222 ~~~i~W~~~p~~~~~~--~pyli~~~~-~~iEV~~~~~~~lvQ~i~~~  266 (275)
T PF00780_consen  222 KSTIQWSSAPQSVAYS--SPYLIAFSS-NSIEVRSLETGELVQTIPLP  266 (275)
T ss_pred             ccEEEcCCchhEEEEE--CCEEEEECC-CEEEEEECcCCcEEEEEECC
Confidence            1111112234455553  346766655 55999999999888887653

These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity

>PHA02713 hypothetical protein; Provisional

Probab=97.62  E-value=0.017  Score=52.43  Aligned_cols=184  Identities=10%  Similarity=0.100  Sum_probs=91.6

Q ss_pred             CCCEEEEeeCC------CeEEEEECCCCceeEEeeCCcc---cEEEEEECCCCCeEEEEecCCC-----eEEEEecCCcc
Q 021247           71 SGIIAASASLD------SFVRVFDVDTNASIATLEASPS---EVWQMQFDPKGTTLAVAGGGSA-----SVKLWDTATWN  136 (315)
Q Consensus        71 ~g~~l~s~~~d------~~i~~w~~~~~~~~~~~~~~~~---~v~~~~~~~~~~~~~~~~~~d~-----~i~~~d~~~~~  136 (315)
                      ++.+++.||.+      ..+..+|..++.-.. +..-+.   ....+..   +..+++.||.++     .+..||..+.+
T Consensus       303 ~~~IYviGG~~~~~~~~~~v~~Yd~~~n~W~~-~~~m~~~R~~~~~~~~---~g~IYviGG~~~~~~~~sve~Ydp~~~~  378 (557)
T PHA02713        303 DNEIIIAGGYNFNNPSLNKVYKINIENKIHVE-LPPMIKNRCRFSLAVI---DDTIYAIGGQNGTNVERTIECYTMGDDK  378 (557)
T ss_pred             CCEEEEEcCCCCCCCccceEEEEECCCCeEee-CCCCcchhhceeEEEE---CCEEEEECCcCCCCCCceEEEEECCCCe
Confidence            56777777754      346677877664321 111111   1112222   234666676543     47788887654


Q ss_pred             eeeeecCCCCCCCCCCccCCCCcceEEEEECCCCCEEEEecCC-----------------------CcEEEEEcccceee
Q 021247          137 LIATLSIPRPEGLKPTDKSSSKKFVLSVAWSPDGRRIACGSMD-----------------------GTISVFDVTRAKFL  193 (315)
Q Consensus       137 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~s~d-----------------------g~i~i~d~~~~~~~  193 (315)
                      ....-..+.+       ...    ...+++  +|+..+.|+.+                       ..+..||+.+.+..
T Consensus       379 W~~~~~mp~~-------r~~----~~~~~~--~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~~~~~ve~YDP~td~W~  445 (557)
T PHA02713        379 WKMLPDMPIA-------LSS----YGMCVL--DQYIYIIGGRTEHIDYTSVHHMNSIDMEEDTHSSNKVIRYDTVNNIWE  445 (557)
T ss_pred             EEECCCCCcc-------ccc----ccEEEE--CCEEEEEeCCCcccccccccccccccccccccccceEEEECCCCCeEe
Confidence            4322111111       011    111222  56666777654                       24778998877654


Q ss_pred             ee--ecCCccceEEEEEcCCCCcEEEEEeCC------CeEEEEeCCC-C--eeEEEeecccccEEEEEEcCCCCeEEEEe
Q 021247          194 HH--LEGHFMPVRSLVYSPVDPRVLFSASDD------THVHMYDAEG-K--SLVTAMSGHASWVLSVDASPDGAAITTGS  262 (315)
Q Consensus       194 ~~--~~~~~~~v~~~~~~~~~~~~l~s~~~d------~~i~~wd~~~-~--~~~~~~~~~~~~i~~~~~~~~~~~l~s~~  262 (315)
                      ..  +....... +++.  .++++.+.|+.+      ..+..||..+ .  +.+..+.........+.+  ++++.++||
T Consensus       446 ~v~~m~~~r~~~-~~~~--~~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~~m~~~r~~~~~~~~--~~~iyv~Gg  520 (557)
T PHA02713        446 TLPNFWTGTIRP-GVVS--HKDDIYVVCDIKDEKNVKTCIFRYNTNTYNGWELITTTESRLSALHTILH--DNTIMMLHC  520 (557)
T ss_pred             ecCCCCcccccC-cEEE--ECCEEEEEeCCCCCCccceeEEEecCCCCCCeeEccccCcccccceeEEE--CCEEEEEee
Confidence            22  21111111 1222  245677777654      2467899876 3  223333222111212222  678889999


Q ss_pred             CCC--cEEEEecCccc
Q 021247          263 SDR--TVKLWDLNMRA  276 (315)
Q Consensus       263 ~d~--~i~iwd~~~~~  276 (315)
                      .|+  .+..||..+.+
T Consensus       521 ~~~~~~~e~yd~~~~~  536 (557)
T PHA02713        521 YESYMLQDTFNVYTYE  536 (557)
T ss_pred             ecceeehhhcCccccc
Confidence            888  66677776543

>PRK13616 lipoprotein LpqB; Provisional

Probab=97.62  E-value=0.043  Score=49.92  Aligned_cols=214  Identities=14%  Similarity=0.114  Sum_probs=105.3

Q ss_pred             CCcEEEEcCCCCcceeeccccccceEEEEeCCCCCEEEEee------CCC--eEEEEECCCCceeEEeeCCcccEEEEEE
Q 021247           39 DETVKLWRPDDMQLERTNTGHCLGVVSVAAHPSGIIAASAS------LDS--FVRVFDVDTNASIATLEASPSEVWQMQF  110 (315)
Q Consensus        39 d~~v~~w~~~~~~~~~~~~~h~~~v~~~~~~~~g~~l~s~~------~d~--~i~~w~~~~~~~~~~~~~~~~~v~~~~~  110 (315)
                      ||.+...+...-....-..+....+.+.+++|+|..++...      .|.  .|.+++... .. ..+... .....-.|
T Consensus       328 ~G~l~~~~~~~~~pv~g~~g~~~~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~gg-~~-~~lt~g-~~~t~PsW  404 (591)
T PRK13616        328 DGSLVSVDGQGVTPVPGAFGQMGNITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPLGG-VA-VQVLEG-HSLTRPSW  404 (591)
T ss_pred             CCeEEEecCCCeeeCCCccccccCcccceECCCCCEEEEEEeecCCCCCcceEEEEEeCCC-cc-eeeecC-CCCCCceE
Confidence            77776654322111111112333577889999999887554      244  454545422 22 222222 23667789


Q ss_pred             CCCCCeEEEEecCCCeEEEEecCCcceeeeecCCCCCCCCCCccCCCCcceEEEEECCCCCEEEEecCCCcEEE---EEc
Q 021247          111 DPKGTTLAVAGGGSASVKLWDTATWNLIATLSIPRPEGLKPTDKSSSKKFVLSVAWSPDGRRIACGSMDGTISV---FDV  187 (315)
Q Consensus       111 ~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~s~dg~i~i---~d~  187 (315)
                      +|+|..+.+....+..+++.+......+..+.....+   ...  .....|..+.|+|||..++... ++.|++   -..
T Consensus       405 spDG~~lw~v~dg~~~~~v~~~~~~gql~~~~vd~ge---~~~--~~~g~Issl~wSpDG~RiA~i~-~g~v~Va~Vvr~  478 (591)
T PRK13616        405 SLDADAVWVVVDGNTVVRVIRDPATGQLARTPVDASA---VAS--RVPGPISELQLSRDGVRAAMII-GGKVYLAVVEQT  478 (591)
T ss_pred             CCCCCceEEEecCcceEEEeccCCCceEEEEeccCch---hhh--ccCCCcCeEEECCCCCEEEEEE-CCEEEEEEEEeC
Confidence            9998766555433233444433222222222221111   000  1233489999999999887655 467777   332


Q ss_pred             ccce-ee---eeecC-CccceEEEEEcCCCCcEEEEEeCCC--eEEEEeCCCCeeEEEeec--ccccEEEEEEcCCCCeE
Q 021247          188 TRAK-FL---HHLEG-HFMPVRSLVYSPVDPRVLFSASDDT--HVHMYDAEGKSLVTAMSG--HASWVLSVDASPDGAAI  258 (315)
Q Consensus       188 ~~~~-~~---~~~~~-~~~~v~~~~~~~~~~~~l~s~~~d~--~i~~wd~~~~~~~~~~~~--~~~~i~~~~~~~~~~~l  258 (315)
                      ..+. .+   ..+.. -...+.++.|.+ ++.++ .+..++  .+...++.+.... .+..  ....+..++-++.  .+
T Consensus       479 ~~G~~~l~~~~~l~~~l~~~~~~l~W~~-~~~L~-V~~~~~~~~v~~v~vDG~~~~-~~~~~n~~~~v~~vaa~~~--~i  553 (591)
T PRK13616        479 EDGQYALTNPREVGPGLGDTAVSLDWRT-GDSLV-VGRSDPEHPVWYVNLDGSNSD-ALPSRNLSAPVVAVAASPS--TV  553 (591)
T ss_pred             CCCceeecccEEeecccCCccccceEec-CCEEE-EEecCCCCceEEEecCCcccc-ccCCCCccCceEEEecCCc--eE
Confidence            3333 11   11222 222357889987 44444 444433  3444444433221 1122  2455667776653  34


Q ss_pred             EEEeCCCc
Q 021247          259 TTGSSDRT  266 (315)
Q Consensus       259 ~s~~~d~~  266 (315)
                      +....++.
T Consensus       554 yv~~~~g~  561 (591)
T PRK13616        554 YVTDARAV  561 (591)
T ss_pred             EEEcCCce
Confidence            44555653

>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=97.61  E-value=0.035  Score=47.39  Aligned_cols=233  Identities=18%  Similarity=0.175  Sum_probs=115.5

Q ss_pred             ccceEEEEEeecCCCCCcEEEEeeCCCcEEEEcCCCCcceee-ccc-------c---------ccceEEEEeCCCCCEEE
Q 021247           14 EESVWAVTWVPATETRPALLLTGSLDETVKLWRPDDMQLERT-NTG-------H---------CLGVVSVAAHPSGIIAA   76 (315)
Q Consensus        14 ~~~v~~v~~~~~~~~~~~~l~sgs~d~~v~~w~~~~~~~~~~-~~~-------h---------~~~v~~~~~~~~g~~l~   76 (315)
                      ...+....|+|.++     .++--.++.|.+++..+.+..+. ..|       -         -..-..+.|+|+|++|+
T Consensus        42 ~~~~~~~~~sP~g~-----~~~~v~~~nly~~~~~~~~~~~lT~dg~~~i~nG~~dwvyeEEv~~~~~~~~WSpd~~~la  116 (353)
T PF00930_consen   42 PPKLQDAKWSPDGK-----YIAFVRDNNLYLRDLATGQETQLTTDGEPGIYNGVPDWVYEEEVFDRRSAVWWSPDSKYLA  116 (353)
T ss_dssp             ETTBSEEEE-SSST-----EEEEEETTEEEEESSTTSEEEESES--TTTEEESB--HHHHHHTSSSSBSEEE-TTSSEEE
T ss_pred             ccccccceeecCCC-----eeEEEecCceEEEECCCCCeEEeccccceeEEcCccceeccccccccccceEECCCCCEEE
Confidence            45778889999876     23334578899998765543221 112       0         01124678999999887


Q ss_pred             EeeCC-CeEE-----------------------------------EEECCCCceeE-E-e---eCCcccEEEEEECCCCC
Q 021247           77 SASLD-SFVR-----------------------------------VFDVDTNASIA-T-L---EASPSEVWQMQFDPKGT  115 (315)
Q Consensus        77 s~~~d-~~i~-----------------------------------~w~~~~~~~~~-~-~---~~~~~~v~~~~~~~~~~  115 (315)
                      ....| ..++                                   ++++.+++... . .   .....-+..+.|.+++.
T Consensus       117 ~~~~d~~~v~~~~~~~~~~~~~~yp~~~~~~YPk~G~~np~v~l~v~~~~~~~~~~~~~~~~~~~~~~yl~~v~W~~d~~  196 (353)
T PF00930_consen  117 FLRFDEREVPEYPLPDYSPPDSQYPEVESIRYPKAGDPNPRVSLFVVDLASGKTTELDPPNSLNPQDYYLTRVGWSPDGK  196 (353)
T ss_dssp             EEEEE-TTS-EEEEEEESSSTESS-EEEEEE--BTTS---EEEEEEEESSSTCCCEE---HHHHTSSEEEEEEEEEETTE
T ss_pred             EEEECCcCCceEEeeccCCccccCCcccccccCCCCCcCCceEEEEEECCCCcEEEeeeccccCCCccCcccceecCCCc
Confidence            65443 2222                                   23332222110 0 0   01122356667777766


Q ss_pred             eEEE-EecCC---CeEEEEecCCcceeeeecCCCCCCCCCCccCCCCcceEEEEEC-CCCC-EEEEecCCCc--EEEEEc
Q 021247          116 TLAV-AGGGS---ASVKLWDTATWNLIATLSIPRPEGLKPTDKSSSKKFVLSVAWS-PDGR-RIACGSMDGT--ISVFDV  187 (315)
Q Consensus       116 ~~~~-~~~~d---~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~~-~l~~~s~dg~--i~i~d~  187 (315)
                      .+++ ....+   ..+.+.|..+++..........         .--.......+. +++. +|.....+|.  |.+++.
T Consensus       197 ~l~~~~~nR~q~~~~l~~~d~~tg~~~~~~~e~~~---------~Wv~~~~~~~~~~~~~~~~l~~s~~~G~~hly~~~~  267 (353)
T PF00930_consen  197 RLWVQWLNRDQNRLDLVLCDASTGETRVVLEETSD---------GWVDVYDPPHFLGPDGNEFLWISERDGYRHLYLYDL  267 (353)
T ss_dssp             EEEEEEEETTSTEEEEEEEEECTTTCEEEEEEESS---------SSSSSSSEEEE-TTTSSEEEEEEETTSSEEEEEEET
T ss_pred             EEEEEEcccCCCEEEEEEEECCCCceeEEEEecCC---------cceeeecccccccCCCCEEEEEEEcCCCcEEEEEcc
Confidence            3333 22222   2344455554433222211000         000111234443 5555 4445557775  556666


Q ss_pred             ccceeeeeecCCccceEE-EEEcCCCCcEEEEEeCC----CeEEEEeCC-CCeeEEEeecccccEEEEEEcCCCCeEEEE
Q 021247          188 TRAKFLHHLEGHFMPVRS-LVYSPVDPRVLFSASDD----THVHMYDAE-GKSLVTAMSGHASWVLSVDASPDGAAITTG  261 (315)
Q Consensus       188 ~~~~~~~~~~~~~~~v~~-~~~~~~~~~~l~s~~~d----~~i~~wd~~-~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~  261 (315)
                      ..+. ...+......|.. +.+.+.+..+++++..+    .+|..-+++ ++.. ..+......-..+.|||++++++-.
T Consensus       268 ~~~~-~~~lT~G~~~V~~i~~~d~~~~~iyf~a~~~~p~~r~lY~v~~~~~~~~-~~LT~~~~~~~~~~~Spdg~y~v~~  345 (353)
T PF00930_consen  268 DGGK-PRQLTSGDWEVTSILGWDEDNNRIYFTANGDNPGERHLYRVSLDSGGEP-KCLTCEDGDHYSASFSPDGKYYVDT  345 (353)
T ss_dssp             TSSE-EEESS-SSS-EEEEEEEECTSSEEEEEESSGGTTSBEEEEEETTETTEE-EESSTTSSTTEEEEE-TTSSEEEEE
T ss_pred             cccc-eeccccCceeecccceEcCCCCEEEEEecCCCCCceEEEEEEeCCCCCe-EeccCCCCCceEEEECCCCCEEEEE
Confidence            6555 3355555566644 66777667777777763    366666777 4443 3444333322689999999987654


Q ss_pred             e
Q 021247          262 S  262 (315)
Q Consensus       262 ~  262 (315)
                      +
T Consensus       346 ~  346 (353)
T PF00930_consen  346 Y  346 (353)
T ss_dssp             E
T ss_pred             E
Confidence            3

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....

>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]

Probab=97.52  E-value=0.081  Score=49.41  Aligned_cols=295  Identities=12%  Similarity=0.124  Sum_probs=155.4

Q ss_pred             ccceEEEEEeecCCCC--CcEEEEeeCCCcEEEEcCC-CCc-ceee-ccc--cccceEEEEeCCCCCEEEEeeCCCeEEE
Q 021247           14 EESVWAVTWVPATETR--PALLLTGSLDETVKLWRPD-DMQ-LERT-NTG--HCLGVVSVAAHPSGIIAASASLDSFVRV   86 (315)
Q Consensus        14 ~~~v~~v~~~~~~~~~--~~~l~sgs~d~~v~~w~~~-~~~-~~~~-~~~--h~~~v~~~~~~~~g~~l~s~~~d~~i~~   86 (315)
                      +.+|.|+.++|.+..+  ..+++.|.++..+.+.-.. +.. .... +.+  -...|.-..+-.++.+|.++..||.+.-
T Consensus       530 e~evaCLDisp~~d~~~~s~~~aVG~Ws~~~~~l~~~pd~~~~~~~~l~~~~iPRSIl~~~~e~d~~yLlvalgdG~l~~  609 (1096)
T KOG1897|consen  530 EYEVACLDISPLGDAPNKSRLLAVGLWSDISMILTFLPDLILITHEQLSGEIIPRSILLTTFEGDIHYLLVALGDGALLY  609 (1096)
T ss_pred             cceeEEEecccCCCCCCcceEEEEEeecceEEEEEECCCcceeeeeccCCCccchheeeEEeeccceEEEEEcCCceEEE
Confidence            4589999999875432  2489999988876555322 111 1111 111  1234666677778899999999999886


Q ss_pred             EECCC--Ccee--EEeeCCcccEEEEEECCCCCeEEEEecCCCeEEEEecCCccee------------eeecCC------
Q 021247           87 FDVDT--NASI--ATLEASPSEVWQMQFDPKGTTLAVAGGGSASVKLWDTATWNLI------------ATLSIP------  144 (315)
Q Consensus        87 w~~~~--~~~~--~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~------------~~~~~~------  144 (315)
                      +.+..  +..-  +.......|+.--.|+..+..-+++++ |.-..+|..+. +++            +.+..+      
T Consensus       610 fv~d~~tg~lsd~Kk~~lGt~P~~Lr~f~sk~~t~vfa~s-drP~viY~~n~-kLv~spls~kev~~~c~f~s~a~~d~l  687 (1096)
T KOG1897|consen  610 FVLDINTGQLSDRKKVTLGTQPISLRTFSSKSRTAVFALS-DRPTVIYSSNG-KLVYSPLSLKEVNHMCPFNSDAYPDSL  687 (1096)
T ss_pred             EEEEcccceEccccccccCCCCcEEEEEeeCCceEEEEeC-CCCEEEEecCC-cEEEeccchHHhhhhcccccccCCceE
Confidence            65543  3211  111122233333334333332222222 22222222111 100            000000      


Q ss_pred             --------------CCCCCCCCccCCCCcceEEEEECCCCCEEEEecC-----------CC---cEEEEEcccceeeeee
Q 021247          145 --------------RPEGLKPTDKSSSKKFVLSVAWSPDGRRIACGSM-----------DG---TISVFDVTRAKFLHHL  196 (315)
Q Consensus       145 --------------~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~s~-----------dg---~i~i~d~~~~~~~~~~  196 (315)
                                    +-+...+. .-.-....+.+++.+....+++.+.           ..   .++++|-.+.+.+...
T Consensus       688 ~~~~~~~l~i~tid~iqkl~ir-tvpl~~~prrI~~q~~sl~~~v~s~r~e~~~~~~~ee~~~s~l~vlD~nTf~vl~~h  766 (1096)
T KOG1897|consen  688 ASANGGALTIGTIDEIQKLHIR-TVPLGESPRRICYQESSLTFGVLSNRIESSAEYYGEEYEVSFLRVLDQNTFEVLSSH  766 (1096)
T ss_pred             EEecCCceEEEEecchhhccee-eecCCCChhheEecccceEEEEEecccccchhhcCCcceEEEEEEecCCceeEEeec
Confidence                          00000000 0011122345666654444433322           11   2566666555544332


Q ss_pred             cC----CccceEEEEEcCCCCcEEEEEeC----------CCeEEEEeCCCCeeEEEeecc--cccEEEEEEcCCCCeEEE
Q 021247          197 EG----HFMPVRSLVYSPVDPRVLFSASD----------DTHVHMYDAEGKSLVTAMSGH--ASWVLSVDASPDGAAITT  260 (315)
Q Consensus       197 ~~----~~~~v~~~~~~~~~~~~l~s~~~----------d~~i~~wd~~~~~~~~~~~~~--~~~i~~~~~~~~~~~l~s  260 (315)
                      +-    .-..+.+..|..+...+++.|..          .|.|.+|.......+.....+  .+.+.++.. -+|+++| 
T Consensus       767 ef~~~E~~~Si~s~~~~~d~~t~~vVGT~~v~Pde~ep~~GRIivfe~~e~~~L~~v~e~~v~Gav~aL~~-fngkllA-  844 (1096)
T KOG1897|consen  767 EFERNETALSIISCKFTDDPNTYYVVGTGLVYPDENEPVNGRIIVFEFEELNSLELVAETVVKGAVYALVE-FNGKLLA-  844 (1096)
T ss_pred             cccccceeeeeeeeeecCCCceEEEEEEEeeccCCCCcccceEEEEEEecCCceeeeeeeeeccceeehhh-hCCeEEE-
Confidence            21    11245566687654566666652          467777776553222222222  344554432 2566665 


Q ss_pred             EeCCCcEEEEecCccceehcccccccceEEEEEeeCCCEEEEEeCCCcEEEeec
Q 021247          261 GSSDRTVKLWDLNMRAAMQSMTNHTDQVWGVSFRPLGGRVVSVSDDKSISLYEY  314 (315)
Q Consensus       261 ~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~i~i~~~  314 (315)
                       +-+..|++|++..++.++.-.++..++..+.+.-.|..++.|..=+.|.+-.|
T Consensus       845 -~In~~vrLye~t~~~eLr~e~~~~~~~~aL~l~v~gdeI~VgDlm~Sitll~y  897 (1096)
T KOG1897|consen  845 -GINQSVRLYEWTTERELRIECNISNPIIALDLQVKGDEIAVGDLMRSITLLQY  897 (1096)
T ss_pred             -ecCcEEEEEEccccceehhhhcccCCeEEEEEEecCcEEEEeeccceEEEEEE
Confidence             55678999999988788877788889999999999999999988787776554

>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=97.47  E-value=0.00075  Score=59.02  Aligned_cols=94  Identities=18%  Similarity=0.240  Sum_probs=74.5

Q ss_pred             ccceEEEEEeecCCCCCcEEEEeeCCCcEEEEcCCCCcceeeccccccceE-EEEeCCCCCEEEEeeCCCeEEEEECCCC
Q 021247           14 EESVWAVTWVPATETRPALLLTGSLDETVKLWRPDDMQLERTNTGHCLGVV-SVAAHPSGIIAASASLDSFVRVFDVDTN   92 (315)
Q Consensus        14 ~~~v~~v~~~~~~~~~~~~l~sgs~d~~v~~w~~~~~~~~~~~~~h~~~v~-~~~~~~~g~~l~s~~~d~~i~~w~~~~~   92 (315)
                      .-.+.-+.|.|.-.    ++|.+-.+|.|-+.... .+....++-|...++ +++|.|||+.++.|-.||+|++-|++++
T Consensus        20 ~~~i~~~ewnP~~d----LiA~~t~~gelli~R~n-~qRlwtip~p~~~v~~sL~W~~DGkllaVg~kdG~I~L~Dve~~   94 (665)
T KOG4640|consen   20 PINIKRIEWNPKMD----LIATRTEKGELLIHRLN-WQRLWTIPIPGENVTASLCWRPDGKLLAVGFKDGTIRLHDVEKG   94 (665)
T ss_pred             ccceEEEEEcCccc----hhheeccCCcEEEEEec-cceeEeccCCCCccceeeeecCCCCEEEEEecCCeEEEEEccCC
Confidence            34788899999654    79999999999988876 666777776777777 9999999999999999999999999998


Q ss_pred             ceeEEe-eCCcccEEEEEECC
Q 021247           93 ASIATL-EASPSEVWQMQFDP  112 (315)
Q Consensus        93 ~~~~~~-~~~~~~v~~~~~~~  112 (315)
                      ..+... .....+|..+-|.+
T Consensus        95 ~~l~~~~~s~e~~is~~~w~~  115 (665)
T KOG4640|consen   95 GRLVSFLFSVETDISKGIWDR  115 (665)
T ss_pred             Cceeccccccccchheeeccc
Confidence            776542 22234566666654

>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family

Probab=97.43  E-value=0.086  Score=47.53  Aligned_cols=204  Identities=13%  Similarity=0.064  Sum_probs=113.2

Q ss_pred             cEEEEeeCCCcEEEEcCCCCcceeeccccc-cceE---EEEeC-----CCCCEEEEeeCCCeEEEEECCCCceeEEeeCC
Q 021247           31 ALLLTGSLDETVKLWRPDDMQLERTNTGHC-LGVV---SVAAH-----PSGIIAASASLDSFVRVFDVDTNASIATLEAS  101 (315)
Q Consensus        31 ~~l~sgs~d~~v~~w~~~~~~~~~~~~~h~-~~v~---~~~~~-----~~g~~l~s~~~d~~i~~w~~~~~~~~~~~~~~  101 (315)
                      ..++.++.++.|.-.|..+++......... ..+.   +....     -.+..++.++.|+.+.-.|..+++.+......
T Consensus        70 g~vyv~s~~g~v~AlDa~TGk~lW~~~~~~~~~~~~~~~~~~~~rg~av~~~~v~v~t~dg~l~ALDa~TGk~~W~~~~~  149 (527)
T TIGR03075        70 GVMYVTTSYSRVYALDAKTGKELWKYDPKLPDDVIPVMCCDVVNRGVALYDGKVFFGTLDARLVALDAKTGKVVWSKKNG  149 (527)
T ss_pred             CEEEEECCCCcEEEEECCCCceeeEecCCCCcccccccccccccccceEECCEEEEEcCCCEEEEEECCCCCEEeecccc
Confidence            467888888999999988887765432110 0111   11000     12345666788999999999999887655421


Q ss_pred             ccc-EEEEEECC--CCCeEEEEec-----CCCeEEEEecCCcceeeeecCCCCCCC-----------CCC---c-----c
Q 021247          102 PSE-VWQMQFDP--KGTTLAVAGG-----GSASVKLWDTATWNLIATLSIPRPEGL-----------KPT---D-----K  154 (315)
Q Consensus       102 ~~~-v~~~~~~~--~~~~~~~~~~-----~d~~i~~~d~~~~~~~~~~~~~~~~~~-----------~~~---~-----~  154 (315)
                      ... -..+.-.|  .+..+++..+     .++.|..+|.++++.+..+....+...           ++.   .     .
T Consensus       150 ~~~~~~~~tssP~v~~g~Vivg~~~~~~~~~G~v~AlD~~TG~~lW~~~~~p~~~~~~~~~~~~~~~~~~~~tw~~~~~~  229 (527)
T TIGR03075       150 DYKAGYTITAAPLVVKGKVITGISGGEFGVRGYVTAYDAKTGKLVWRRYTVPGDMGYLDKADKPVGGEPGAKTWPGDAWK  229 (527)
T ss_pred             cccccccccCCcEEECCEEEEeecccccCCCcEEEEEECCCCceeEeccCcCCCcccccccccccccccccCCCCCCccc
Confidence            100 00011111  1223443322     268999999999999887654322100           000   0     0


Q ss_pred             -CCCCcceEEEEECCCCCEEEEecCC-----C-----------cEEEEEcccceeeeeecC--Cc-------cceEEEEE
Q 021247          155 -SSSKKFVLSVAWSPDGRRIACGSMD-----G-----------TISVFDVTRAKFLHHLEG--HF-------MPVRSLVY  208 (315)
Q Consensus       155 -~~~~~~i~~~~~~~~~~~l~~~s~d-----g-----------~i~i~d~~~~~~~~~~~~--~~-------~~v~~~~~  208 (315)
                       .....+ ..+++.++.+++..+..+     +           .|.-.|+++++..=.++.  |.       ....-+..
T Consensus       230 ~gg~~~W-~~~s~D~~~~lvy~~tGnp~p~~~~~r~gdnl~~~s~vAld~~TG~~~W~~Q~~~~D~wD~d~~~~p~l~d~  308 (527)
T TIGR03075       230 TGGGATW-GTGSYDPETNLIYFGTGNPSPWNSHLRPGDNLYTSSIVARDPDTGKIKWHYQTTPHDEWDYDGVNEMILFDL  308 (527)
T ss_pred             cCCCCcc-CceeEcCCCCeEEEeCCCCCCCCCCCCCCCCccceeEEEEccccCCEEEeeeCCCCCCccccCCCCcEEEEe
Confidence             000111 245777776666665422     2           577778888887544332  21       11112222


Q ss_pred             cCCCC---cEEEEEeCCCeEEEEeCCCCeeE
Q 021247          209 SPVDP---RVLFSASDDTHVHMYDAEGKSLV  236 (315)
Q Consensus       209 ~~~~~---~~l~s~~~d~~i~~wd~~~~~~~  236 (315)
                      . .++   ..++.+..+|.+++.|.++++++
T Consensus       309 ~-~~G~~~~~v~~~~K~G~~~vlDr~tG~~i  338 (527)
T TIGR03075       309 K-KDGKPRKLLAHADRNGFFYVLDRTNGKLL  338 (527)
T ss_pred             c-cCCcEEEEEEEeCCCceEEEEECCCCcee
Confidence            1 233   37889999999999999888765

This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.

>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex

Probab=97.39  E-value=0.078  Score=46.18  Aligned_cols=197  Identities=9%  Similarity=0.155  Sum_probs=94.1

Q ss_pred             eEEEEECCCCceeEEeeCCcccEEEEEECCCCCeEEEEecCCCeEEEEecCCcceeeeecCCCCCCCCCCccCCCCcceE
Q 021247           83 FVRVFDVDTNASIATLEASPSEVWQMQFDPKGTTLAVAGGGSASVKLWDTATWNLIATLSIPRPEGLKPTDKSSSKKFVL  162 (315)
Q Consensus        83 ~i~~w~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~  162 (315)
                      .|++++.. |..+..+....+.+..+.|..+...+++  ..||.+++||... +.  .+.++....    ........+.
T Consensus        62 ~I~iys~s-G~ll~~i~w~~~~iv~~~wt~~e~LvvV--~~dG~v~vy~~~G-~~--~fsl~~~i~----~~~v~e~~i~  131 (410)
T PF04841_consen   62 SIQIYSSS-GKLLSSIPWDSGRIVGMGWTDDEELVVV--QSDGTVRVYDLFG-EF--QFSLGEEIE----EEKVLECRIF  131 (410)
T ss_pred             EEEEECCC-CCEeEEEEECCCCEEEEEECCCCeEEEE--EcCCEEEEEeCCC-ce--eechhhhcc----ccCccccccc
Confidence            47787764 4455555555578999999887655444  4799999999863 22  232221100    0000001111


Q ss_pred             EEEECCCCCEEEEecCCCcEEEEEcccce-eee---eecCCc-----c-ceEE-EEEcCCCCcEEEEEeCCCeEEEEeCC
Q 021247          163 SVAWSPDGRRIACGSMDGTISVFDVTRAK-FLH---HLEGHF-----M-PVRS-LVYSPVDPRVLFSASDDTHVHMYDAE  231 (315)
Q Consensus       163 ~~~~~~~~~~l~~~s~dg~i~i~d~~~~~-~~~---~~~~~~-----~-~v~~-~~~~~~~~~~l~s~~~d~~i~~wd~~  231 (315)
                      ...+..+|  ++.-+.++.+++..-.... ...   .+....     . .... ..++. +....+....++.+.+.+..
T Consensus       132 ~~~~~~~G--ivvLt~~~~~~~v~n~~~~~~~~~~~~~p~~~~~~~~~~~~~~i~~l~~-~~~~~i~~~~g~~i~~i~~~  208 (410)
T PF04841_consen  132 AIWFYKNG--IVVLTGNNRFYVVNNIDEPVKLRRLPEIPGLWTKFHWWPSWTVIPLLSS-DRVVEILLANGETIYIIDEN  208 (410)
T ss_pred             ccccCCCC--EEEECCCCeEEEEeCccccchhhccccCCCcccccccccccccceEeec-CcceEEEEecCCEEEEEEcc
Confidence            12222233  3333344455444321111 101   111000     0 0000 11222 22233333344444433322


Q ss_pred             CCeeEEEeecccccEEEEEEcCCCCeEEEEeCCCcEEEEecCccceehccccc-ccceEEEEEeeC
Q 021247          232 GKSLVTAMSGHASWVLSVDASPDGAAITTGSSDRTVKLWDLNMRAAMQSMTNH-TDQVWGVSFRPL  296 (315)
Q Consensus       232 ~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~-~~~v~~~~~s~~  296 (315)
                      ....   +. ..+++..+++||+++++|.-..+|.+.+...+-.+.+..+... ......+.|.-+
T Consensus       209 ~~~~---i~-~~~~i~~iavSpng~~iAl~t~~g~l~v~ssDf~~~~~e~~~~~~~~p~~~~WCG~  270 (410)
T PF04841_consen  209 SFKQ---ID-SDGPIIKIAVSPNGKFIALFTDSGNLWVVSSDFSEKLCEFDTDSKSPPKQMAWCGN  270 (410)
T ss_pred             cccc---cc-CCCCeEEEEECCCCCEEEEEECCCCEEEEECcccceeEEeecCcCCCCcEEEEECC
Confidence            2111   11 2357999999999999999999999988876554444333222 223445555443

Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm

>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1

Probab=97.38  E-value=0.061  Score=44.66  Aligned_cols=232  Identities=15%  Similarity=0.169  Sum_probs=120.8

Q ss_pred             CCcEEEEcCCCCcceee--ccc-ccc----ceEEEEeCCCCCEEEE--eeCCCeEEEEECCCCceeEEeeCCcccEEEEE
Q 021247           39 DETVKLWRPDDMQLERT--NTG-HCL----GVVSVAAHPSGIIAAS--ASLDSFVRVFDVDTNASIATLEASPSEVWQMQ  109 (315)
Q Consensus        39 d~~v~~w~~~~~~~~~~--~~~-h~~----~v~~~~~~~~g~~l~s--~~~d~~i~~w~~~~~~~~~~~~~~~~~v~~~~  109 (315)
                      +..|.+||..+......  ++. |..    ....+.++.+|++++.  .+--..|-|-|+...+.+..+....  ++.+-
T Consensus        66 tDvv~~~D~~TL~~~~EI~iP~k~R~~~~~~~~~~~ls~dgk~~~V~N~TPa~SVtVVDl~~~kvv~ei~~PG--C~~iy  143 (342)
T PF06433_consen   66 TDVVEIWDTQTLSPTGEIEIPPKPRAQVVPYKNMFALSADGKFLYVQNFTPATSVTVVDLAAKKVVGEIDTPG--CWLIY  143 (342)
T ss_dssp             EEEEEEEETTTTEEEEEEEETTS-B--BS--GGGEEE-TTSSEEEEEEESSSEEEEEEETTTTEEEEEEEGTS--EEEEE
T ss_pred             eeEEEEEecCcCcccceEecCCcchheecccccceEEccCCcEEEEEccCCCCeEEEEECCCCceeeeecCCC--EEEEE
Confidence            55689999888765543  232 121    1123456677765543  3444557777777766666555321  22222


Q ss_pred             ECCCCCeEEEEecCCCeEEEEecC-CcceeeeecCCCCCCCCCCccCCCCcceEEEEECCCCCEEEEecCCCcEEEEEcc
Q 021247          110 FDPKGTTLAVAGGGSASVKLWDTA-TWNLIATLSIPRPEGLKPTDKSSSKKFVLSVAWSPDGRRIACGSMDGTISVFDVT  188 (315)
Q Consensus       110 ~~~~~~~~~~~~~~d~~i~~~d~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~s~dg~i~i~d~~  188 (315)
                        |.++.-+.+-+.||.+.-..+. .++...+-.  ..  +.+    .....+..-++...+..++--+.+|.|+--|+.
T Consensus       144 --P~~~~~F~~lC~DGsl~~v~Ld~~Gk~~~~~t--~~--F~~----~~dp~f~~~~~~~~~~~~~F~Sy~G~v~~~dls  213 (342)
T PF06433_consen  144 --PSGNRGFSMLCGDGSLLTVTLDADGKEAQKST--KV--FDP----DDDPLFEHPAYSRDGGRLYFVSYEGNVYSADLS  213 (342)
T ss_dssp             --EEETTEEEEEETTSCEEEEEETSTSSEEEEEE--EE--SST----TTS-B-S--EEETTTTEEEEEBTTSEEEEEEET
T ss_pred             --ecCCCceEEEecCCceEEEEECCCCCEeEeec--cc--cCC----CCcccccccceECCCCeEEEEecCCEEEEEecc
Confidence              2222123344568888877776 344432110  00  000    001112223334444455556778888888875


Q ss_pred             ccee--eeeecCC----------ccceEEEEEcCCCCcEEEEEe--CCC-------eEEEEeCCCCeeEEEeecccccEE
Q 021247          189 RAKF--LHHLEGH----------FMPVRSLVYSPVDPRVLFSAS--DDT-------HVHMYDAEGKSLVTAMSGHASWVL  247 (315)
Q Consensus       189 ~~~~--~~~~~~~----------~~~v~~~~~~~~~~~~l~s~~--~d~-------~i~~wd~~~~~~~~~~~~~~~~i~  247 (315)
                      ....  ...+..-          .+.-.-+++++..+++++.--  .++       .|.+||+++++.+.++.- ...+.
T Consensus       214 g~~~~~~~~~~~~t~~e~~~~WrPGG~Q~~A~~~~~~rlyvLMh~g~~gsHKdpgteVWv~D~~t~krv~Ri~l-~~~~~  292 (342)
T PF06433_consen  214 GDSAKFGKPWSLLTDAEKADGWRPGGWQLIAYHAASGRLYVLMHQGGEGSHKDPGTEVWVYDLKTHKRVARIPL-EHPID  292 (342)
T ss_dssp             TSSEEEEEEEESS-HHHHHTTEEE-SSS-EEEETTTTEEEEEEEE--TT-TTS-EEEEEEEETTTTEEEEEEEE-EEEES
T ss_pred             CCcccccCcccccCccccccCcCCcceeeeeeccccCeEEEEecCCCCCCccCCceEEEEEECCCCeEEEEEeC-CCccc
Confidence            4432  2222110          011234567664554444321  122       488899999999888763 23466


Q ss_pred             EEEEcCCCC-eEEE-EeCCCcEEEEecCccceehcccc
Q 021247          248 SVDASPDGA-AITT-GSSDRTVKLWDLNMRAAMQSMTN  283 (315)
Q Consensus       248 ~~~~~~~~~-~l~s-~~~d~~i~iwd~~~~~~~~~~~~  283 (315)
                      ++.++.+.+ +|.+ ...++.+.+||..+++.++.+..
T Consensus       293 Si~Vsqd~~P~L~~~~~~~~~l~v~D~~tGk~~~~~~~  330 (342)
T PF06433_consen  293 SIAVSQDDKPLLYALSAGDGTLDVYDAATGKLVRSIEQ  330 (342)
T ss_dssp             EEEEESSSS-EEEEEETTTTEEEEEETTT--EEEEE--
T ss_pred             eEEEccCCCcEEEEEcCCCCeEEEEeCcCCcEEeehhc
Confidence            888888765 5544 45688999999999998887754

4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....

>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A

Probab=97.36  E-value=0.072  Score=45.08  Aligned_cols=222  Identities=15%  Similarity=0.158  Sum_probs=102.2

Q ss_pred             EeCCCCCEEE-EeeCC--CeEEEEECCCCceeEEeeCCcccEEEEEECCCCCeEEEEecCCCeEEEEecCCcceeeeecC
Q 021247           67 AAHPSGIIAA-SASLD--SFVRVFDVDTNASIATLEASPSEVWQMQFDPKGTTLAVAGGGSASVKLWDTATWNLIATLSI  143 (315)
Q Consensus        67 ~~~~~g~~l~-s~~~d--~~i~~w~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~  143 (315)
                      +|.++|+.|+ ++..|  ..+++.|+.+++..+.-+..........++|+++.++..- ....++-.|+++.+....+..
T Consensus        42 ~ft~dG~kllF~s~~dg~~nly~lDL~t~~i~QLTdg~g~~~~g~~~s~~~~~~~Yv~-~~~~l~~vdL~T~e~~~vy~~  120 (386)
T PF14583_consen   42 CFTDDGRKLLFASDFDGNRNLYLLDLATGEITQLTDGPGDNTFGGFLSPDDRALYYVK-NGRSLRRVDLDTLEERVVYEV  120 (386)
T ss_dssp             -B-TTS-EEEEEE-TTSS-EEEEEETTT-EEEE---SS-B-TTT-EE-TTSSEEEEEE-TTTEEEEEETTT--EEEEEE-
T ss_pred             CcCCCCCEEEEEeccCCCcceEEEEcccCEEEECccCCCCCccceEEecCCCeEEEEE-CCCeEEEEECCcCcEEEEEEC
Confidence            5678886555 44444  4577778888876655443323233455678877765543 345888889998877666655


Q ss_pred             CCCCCCCCCccCCCCcceEEEEE--CCCCCEEEEec----------------------CCCcEEEEEcccceeeeeecCC
Q 021247          144 PRPEGLKPTDKSSSKKFVLSVAW--SPDGRRIACGS----------------------MDGTISVFDVTRAKFLHHLEGH  199 (315)
Q Consensus       144 ~~~~~~~~~~~~~~~~~i~~~~~--~~~~~~l~~~s----------------------~dg~i~i~d~~~~~~~~~~~~~  199 (315)
                      +..             +.-...|  +.++..++-.-                      ....|...|+.+++....+. .
T Consensus       121 p~~-------------~~g~gt~v~n~d~t~~~g~e~~~~d~~~l~~~~~f~e~~~a~p~~~i~~idl~tG~~~~v~~-~  186 (386)
T PF14583_consen  121 PDD-------------WKGYGTWVANSDCTKLVGIEISREDWKPLTKWKGFREFYEARPHCRIFTIDLKTGERKVVFE-D  186 (386)
T ss_dssp             -TT-------------EEEEEEEEE-TTSSEEEEEEEEGGG-----SHHHHHHHHHC---EEEEEEETTT--EEEEEE-E
T ss_pred             Ccc-------------cccccceeeCCCccEEEEEEEeehhccCccccHHHHHHHhhCCCceEEEEECCCCceeEEEe-c
Confidence            432             2222333  33444433211                      12345556777666433332 3


Q ss_pred             ccceEEEEEcCCCCcEEEEEeC------CCeEEEEeCCCCeeEEEeecc--cccEEEEEEcCCCCeEEEE-----eCCCc
Q 021247          200 FMPVRSLVYSPVDPRVLFSASD------DTHVHMYDAEGKSLVTAMSGH--ASWVLSVDASPDGAAITTG-----SSDRT  266 (315)
Q Consensus       200 ~~~v~~~~~~~~~~~~l~s~~~------d~~i~~wd~~~~~~~~~~~~~--~~~i~~~~~~~~~~~l~s~-----~~d~~  266 (315)
                      ..-+.-+.|+|.++.+|+-|-.      |..|.+-+..+... ..+..+  ...+..=-|.|+|..+.--     +.+..
T Consensus       187 ~~wlgH~~fsP~dp~li~fCHEGpw~~Vd~RiW~i~~dg~~~-~~v~~~~~~e~~gHEfw~~DG~~i~y~~~~~~~~~~~  265 (386)
T PF14583_consen  187 TDWLGHVQFSPTDPTLIMFCHEGPWDLVDQRIWTINTDGSNV-KKVHRRMEGESVGHEFWVPDGSTIWYDSYTPGGQDFW  265 (386)
T ss_dssp             SS-EEEEEEETTEEEEEEEEE-S-TTTSS-SEEEEETTS----EESS---TTEEEEEEEE-TTSS-EEEEEEETTT--EE
T ss_pred             CccccCcccCCCCCCEEEEeccCCcceeceEEEEEEcCCCcc-eeeecCCCCcccccccccCCCCEEEEEeecCCCCceE
Confidence            3456778899988888777643      22444445443322 222222  2233344588888755321     22445


Q ss_pred             EEEEecCccceehcccccccceEEEEEeeCCCEEEEEeCC
Q 021247          267 VKLWDLNMRAAMQSMTNHTDQVWGVSFRPLGGRVVSVSDD  306 (315)
Q Consensus       267 i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d  306 (315)
                      |.-+|+.+++.....  ........--++||.+++.=|.|
T Consensus       266 i~~~d~~t~~~~~~~--~~p~~~H~~ss~Dg~L~vGDG~d  303 (386)
T PF14583_consen  266 IAGYDPDTGERRRLM--EMPWCSHFMSSPDGKLFVGDGGD  303 (386)
T ss_dssp             EEEE-TTT--EEEEE--EE-SEEEEEE-TTSSEEEEEE--
T ss_pred             EEeeCCCCCCceEEE--eCCceeeeEEcCCCCEEEecCCC
Confidence            666677766443222  22345566777889887754444

>PHA02713 hypothetical protein; Provisional

Probab=97.36  E-value=0.045  Score=49.71  Aligned_cols=139  Identities=10%  Similarity=0.080  Sum_probs=72.5

Q ss_pred             CCCEEEEecCCC-----cEEEEEcccceeee--eecCCccceEEEEEcCCCCcEEEEEeCC-------------------
Q 021247          169 DGRRIACGSMDG-----TISVFDVTRAKFLH--HLEGHFMPVRSLVYSPVDPRVLFSASDD-------------------  222 (315)
Q Consensus       169 ~~~~l~~~s~dg-----~i~i~d~~~~~~~~--~~~~~~~~v~~~~~~~~~~~~l~s~~~d-------------------  222 (315)
                      +|+..+.|+.++     .+..||..+.+...  .+.........+.   .++.+.+.||.+                   
T Consensus       351 ~g~IYviGG~~~~~~~~sve~Ydp~~~~W~~~~~mp~~r~~~~~~~---~~g~IYviGG~~~~~~~~~~~~~~~~~~~~~  427 (557)
T PHA02713        351 DDTIYAIGGQNGTNVERTIECYTMGDDKWKMLPDMPIALSSYGMCV---LDQYIYIIGGRTEHIDYTSVHHMNSIDMEED  427 (557)
T ss_pred             CCEEEEECCcCCCCCCceEEEEECCCCeEEECCCCCcccccccEEE---ECCEEEEEeCCCccccccccccccccccccc
Confidence            566777777654     48889988776533  2211111111122   256677777754                   


Q ss_pred             ----CeEEEEeCCCCee--EEEeecccccEEEEEEcCCCCeEEEEeCCC------cEEEEecCc---cceehcccccccc
Q 021247          223 ----THVHMYDAEGKSL--VTAMSGHASWVLSVDASPDGAAITTGSSDR------TVKLWDLNM---RAAMQSMTNHTDQ  287 (315)
Q Consensus       223 ----~~i~~wd~~~~~~--~~~~~~~~~~i~~~~~~~~~~~l~s~~~d~------~i~iwd~~~---~~~~~~~~~~~~~  287 (315)
                          ..+..||.++.+-  +..+...  ....-...-++++.+.||.++      .|..||..+   +..+..++.....
T Consensus       428 ~~~~~~ve~YDP~td~W~~v~~m~~~--r~~~~~~~~~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~~m~~~r~~  505 (557)
T PHA02713        428 THSSNKVIRYDTVNNIWETLPNFWTG--TIRPGVVSHKDDIYVVCDIKDEKNVKTCIFRYNTNTYNGWELITTTESRLSA  505 (557)
T ss_pred             ccccceEEEECCCCCeEeecCCCCcc--cccCcEEEECCEEEEEeCCCCCCccceeEEEecCCCCCCeeEccccCccccc
Confidence                2467788765432  2222111  111111222566777777542      366788765   3444445443333


Q ss_pred             eEEEEEeeCCCEEEEEeCCC--cEEEeec
Q 021247          288 VWGVSFRPLGGRVVSVSDDK--SISLYEY  314 (315)
Q Consensus       288 v~~~~~s~~~~~l~s~~~d~--~i~i~~~  314 (315)
                      ...+++  +|+..+.||.|+  ++..||.
T Consensus       506 ~~~~~~--~~~iyv~Gg~~~~~~~e~yd~  532 (557)
T PHA02713        506 LHTILH--DNTIMMLHCYESYMLQDTFNV  532 (557)
T ss_pred             ceeEEE--CCEEEEEeeecceeehhhcCc
Confidence            333333  566668888888  5655553

>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family

Probab=97.33  E-value=0.11  Score=46.75  Aligned_cols=158  Identities=16%  Similarity=0.239  Sum_probs=90.4

Q ss_pred             EEEEeeCCCcEEEEcCCCCcceeeccc--ccc--ceEEEEeCCCCCEEEEee-----CCCeEEEEECCCCceeEEeeCCc
Q 021247           32 LLLTGSLDETVKLWRPDDMQLERTNTG--HCL--GVVSVAAHPSGIIAASAS-----LDSFVRVFDVDTNASIATLEASP  102 (315)
Q Consensus        32 ~l~sgs~d~~v~~w~~~~~~~~~~~~~--h~~--~v~~~~~~~~g~~l~s~~-----~d~~i~~w~~~~~~~~~~~~~~~  102 (315)
                      .++.++.|+.+.-.|..+++.......  +..  .+.+--.-.++.+++..+     .+|.|+.+|.++++.+..+...+
T Consensus       122 ~v~v~t~dg~l~ALDa~TGk~~W~~~~~~~~~~~~~tssP~v~~g~Vivg~~~~~~~~~G~v~AlD~~TG~~lW~~~~~p  201 (527)
T TIGR03075       122 KVFFGTLDARLVALDAKTGKVVWSKKNGDYKAGYTITAAPLVVKGKVITGISGGEFGVRGYVTAYDAKTGKLVWRRYTVP  201 (527)
T ss_pred             EEEEEcCCCEEEEEECCCCCEEeecccccccccccccCCcEEECCEEEEeecccccCCCcEEEEEECCCCceeEeccCcC
Confidence            577788899999999888887654321  111  111111111444444322     36899999999988765542211


Q ss_pred             -------------------------------ccEE-EEEECCCCCeEEEEecC----CC-----------eEEEEecCCc
Q 021247          103 -------------------------------SEVW-QMQFDPKGTTLAVAGGG----SA-----------SVKLWDTATW  135 (315)
Q Consensus       103 -------------------------------~~v~-~~~~~~~~~~~~~~~~~----d~-----------~i~~~d~~~~  135 (315)
                                                     ..+| .++++|....+++..+.    ++           .|.-.|++++
T Consensus       202 ~~~~~~~~~~~~~~~~~~~~tw~~~~~~~gg~~~W~~~s~D~~~~lvy~~tGnp~p~~~~~r~gdnl~~~s~vAld~~TG  281 (527)
T TIGR03075       202 GDMGYLDKADKPVGGEPGAKTWPGDAWKTGGGATWGTGSYDPETNLIYFGTGNPSPWNSHLRPGDNLYTSSIVARDPDTG  281 (527)
T ss_pred             CCcccccccccccccccccCCCCCCccccCCCCccCceeEcCCCCeEEEeCCCCCCCCCCCCCCCCccceeEEEEccccC
Confidence                                           1233 34677766655543322    12           5666788888


Q ss_pred             ceeeeecCCCCCCCCCCccCCCCcceEEEEECCCCC---EEEEecCCCcEEEEEcccceee
Q 021247          136 NLIATLSIPRPEGLKPTDKSSSKKFVLSVAWSPDGR---RIACGSMDGTISVFDVTRAKFL  193 (315)
Q Consensus       136 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~---~l~~~s~dg~i~i~d~~~~~~~  193 (315)
                      +....+.......-    .........-+.+..+|+   .++.+.++|.+++.|.++++.+
T Consensus       282 ~~~W~~Q~~~~D~w----D~d~~~~p~l~d~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~i  338 (527)
T TIGR03075       282 KIKWHYQTTPHDEW----DYDGVNEMILFDLKKDGKPRKLLAHADRNGFFYVLDRTNGKLL  338 (527)
T ss_pred             CEEEeeeCCCCCCc----cccCCCCcEEEEeccCCcEEEEEEEeCCCceEEEEECCCCcee
Confidence            88777644222110    000001111223334665   6778999999999999998875

This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.

>PRK13616 lipoprotein LpqB; Provisional

Probab=97.31  E-value=0.086  Score=48.06  Aligned_cols=183  Identities=14%  Similarity=0.141  Sum_probs=97.9

Q ss_pred             cEEEEEECCCCCeEEEEec-----CC--CeEEEEecCCcceeeeecCCCCCCCCCCccCCCCcceEEEEECCCCCEEEEe
Q 021247          104 EVWQMQFDPKGTTLAVAGG-----GS--ASVKLWDTATWNLIATLSIPRPEGLKPTDKSSSKKFVLSVAWSPDGRRIACG  176 (315)
Q Consensus       104 ~v~~~~~~~~~~~~~~~~~-----~d--~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~  176 (315)
                      .+...+++|+++.+++...     .|  ..|.+++... .. ..+.             ... ....-.|+|+|+.++..
T Consensus       351 ~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~gg-~~-~~lt-------------~g~-~~t~PsWspDG~~lw~v  414 (591)
T PRK13616        351 NITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPLGG-VA-VQVL-------------EGH-SLTRPSWSLDADAVWVV  414 (591)
T ss_pred             CcccceECCCCCEEEEEEeecCCCCCcceEEEEEeCCC-cc-eeee-------------cCC-CCCCceECCCCCceEEE
Confidence            5678889999998877652     23  3455555321 11 1110             001 14566789998877655


Q ss_pred             cCC------------CcEEEEEcccceeeeeecCCccceEEEEEcCCCCcEEEEEeCCCeEEE---EeCCCCe-eE---E
Q 021247          177 SMD------------GTISVFDVTRAKFLHHLEGHFMPVRSLVYSPVDPRVLFSASDDTHVHM---YDAEGKS-LV---T  237 (315)
Q Consensus       177 s~d------------g~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~~---wd~~~~~-~~---~  237 (315)
                      ...            +.+.+.++..+....   .....|..+.|+|++.++++..  ++.|++   -....+. .+   .
T Consensus       415 ~dg~~~~~v~~~~~~gql~~~~vd~ge~~~---~~~g~Issl~wSpDG~RiA~i~--~g~v~Va~Vvr~~~G~~~l~~~~  489 (591)
T PRK13616        415 VDGNTVVRVIRDPATGQLARTPVDASAVAS---RVPGPISELQLSRDGVRAAMII--GGKVYLAVVEQTEDGQYALTNPR  489 (591)
T ss_pred             ecCcceEEEeccCCCceEEEEeccCchhhh---ccCCCcCeEEECCCCCEEEEEE--CCEEEEEEEEeCCCCceeecccE
Confidence            422            233333443333222   2245799999999665555544  467766   3433443 11   1


Q ss_pred             Eeec-ccccEEEEEEcCCCCeEEEEeCCCcEEEEecCccceeh-cccc--cccceEEEEEeeCCCEEEEEeCCCcEE
Q 021247          238 AMSG-HASWVLSVDASPDGAAITTGSSDRTVKLWDLNMRAAMQ-SMTN--HTDQVWGVSFRPLGGRVVSVSDDKSIS  310 (315)
Q Consensus       238 ~~~~-~~~~i~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~-~~~~--~~~~v~~~~~s~~~~~l~s~~~d~~i~  310 (315)
                      .+.. -...+.++.|.+++.++ ++..++...+|.+....... .+..  ...++.+|+=++.  .|+....++.++
T Consensus       490 ~l~~~l~~~~~~l~W~~~~~L~-V~~~~~~~~v~~v~vDG~~~~~~~~~n~~~~v~~vaa~~~--~iyv~~~~g~~~  563 (591)
T PRK13616        490 EVGPGLGDTAVSLDWRTGDSLV-VGRSDPEHPVWYVNLDGSNSDALPSRNLSAPVVAVAASPS--TVYVTDARAVLQ  563 (591)
T ss_pred             EeecccCCccccceEecCCEEE-EEecCCCCceEEEecCCccccccCCCCccCceEEEecCCc--eEEEEcCCceEE
Confidence            1222 22335789999998854 55555555566554322211 1122  3467777777763  466656666444

>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=97.30  E-value=0.061  Score=43.11  Aligned_cols=232  Identities=19%  Similarity=0.222  Sum_probs=124.0

Q ss_pred             EEEEEeecCCCCCcEEEEeeCCCc-EEEEcCCCCcceee--------ccccccceEEEEeCCCCCEEEEeeCC-----Ce
Q 021247           18 WAVTWVPATETRPALLLTGSLDET-VKLWRPDDMQLERT--------NTGHCLGVVSVAAHPSGIIAASASLD-----SF   83 (315)
Q Consensus        18 ~~v~~~~~~~~~~~~l~sgs~d~~-v~~w~~~~~~~~~~--------~~~h~~~v~~~~~~~~g~~l~s~~~d-----~~   83 (315)
                      ..++++|..+.   -++-+-.=|+ ..++|+++.+....        +.||.      .|||+|.+|.+.-.|     |.
T Consensus        71 Hgi~~~p~~~r---avafARrPGtf~~vfD~~~~~~pv~~~s~~~RHfyGHG------vfs~dG~~LYATEndfd~~rGV  141 (366)
T COG3490          71 HGIAFHPALPR---AVAFARRPGTFAMVFDPNGAQEPVTLVSQEGRHFYGHG------VFSPDGRLLYATENDFDPNRGV  141 (366)
T ss_pred             CCeecCCCCcc---eEEEEecCCceEEEECCCCCcCcEEEecccCceeeccc------ccCCCCcEEEeecCCCCCCCce
Confidence            35666665432   2444444443 46677766554332        33442      489999999876444     77


Q ss_pred             EEEEECCCCc-eeEEeeCCcccEEEEEECCCCCeEEEEecC------C-----------CeEEEEecCCcceeeeecCCC
Q 021247           84 VRVFDVDTNA-SIATLEASPSEVWQMQFDPKGTTLAVAGGG------S-----------ASVKLWDTATWNLIATLSIPR  145 (315)
Q Consensus        84 i~~w~~~~~~-~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~------d-----------~~i~~~d~~~~~~~~~~~~~~  145 (315)
                      |-+||...+- .+-.+..+.--.-.+.+.++|..++++.++      .           -.+.+.|..+++++.+..++.
T Consensus       142 iGvYd~r~~fqrvgE~~t~GiGpHev~lm~DGrtlvvanGGIethpdfgR~~lNldsMePSlvlld~atG~liekh~Lp~  221 (366)
T COG3490         142 IGVYDAREGFQRVGEFSTHGIGPHEVTLMADGRTLVVANGGIETHPDFGRTELNLDSMEPSLVLLDAATGNLIEKHTLPA  221 (366)
T ss_pred             EEEEecccccceecccccCCcCcceeEEecCCcEEEEeCCceecccccCccccchhhcCccEEEEeccccchhhhccCch
Confidence            8899987542 333444443334467788999987766541      1           123334444444444433331


Q ss_pred             CCCCCCCccCCCCcceEEEEECCCCCEEEEecCCCcE-----EEEEcccceeeeeecC-------CccceEEEEEcCCCC
Q 021247          146 PEGLKPTDKSSSKKFVLSVAWSPDGRRIACGSMDGTI-----SVFDVTRAKFLHHLEG-------HFMPVRSLVYSPVDP  213 (315)
Q Consensus       146 ~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~s~dg~i-----~i~d~~~~~~~~~~~~-------~~~~v~~~~~~~~~~  213 (315)
                      .         .+.-.|+.++..++|...+.+-..|.-     .+=-...++.++.+..       -...|-+++.+..++
T Consensus       222 ~---------l~~lSiRHld~g~dgtvwfgcQy~G~~~d~ppLvg~~~~g~~l~~~~~pee~~~~~anYigsiA~n~~~g  292 (366)
T COG3490         222 S---------LRQLSIRHLDIGRDGTVWFGCQYRGPRNDLPPLVGHFRKGEPLEFLDLPEEQTAAFANYIGSIAANRRDG  292 (366)
T ss_pred             h---------hhhcceeeeeeCCCCcEEEEEEeeCCCccCCcceeeccCCCcCcccCCCHHHHHHHHhhhhheeecccCC
Confidence            1         122347788888888766655433311     0000112222222211       122456677765555


Q ss_pred             cEEEEEeCCCeEEEEeCCCCeeEEEeecccccEEEEEEcCCCCeEEEEeCCCcEEEEe
Q 021247          214 RVLFSASDDTHVHMYDAEGKSLVTAMSGHASWVLSVDASPDGAAITTGSSDRTVKLWD  271 (315)
Q Consensus       214 ~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~d~~i~iwd  271 (315)
                      -..+++=..+...+||.+++.++....-  .....+.....  =++..+.+|.+.++.
T Consensus       293 lV~lTSP~GN~~vi~da~tG~vv~~a~l--~daaGva~~~~--gf~vssg~G~~~~~s  346 (366)
T COG3490         293 LVALTSPRGNRAVIWDAATGAVVSEAAL--PDAAGVAAAKG--GFAVSSGQGRIIFYS  346 (366)
T ss_pred             eEEEecCCCCeEEEEEcCCCcEEecccc--cccccceeccC--ceEEecCCceEEecc
Confidence            5555666667788999999987754321  11222333322  355556678887764

>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=97.29  E-value=0.001  Score=58.23  Aligned_cols=71  Identities=17%  Similarity=0.206  Sum_probs=62.1

Q ss_pred             ccEEEEEEcCCCCeEEEEeCCCcEEEEecCccceehcccccccceE-EEEEeeCCCEEEEEeCCCcEEEeecC
Q 021247          244 SWVLSVDASPDGAAITTGSSDRTVKLWDLNMRAAMQSMTNHTDQVW-GVSFRPLGGRVVSVSDDKSISLYEYS  315 (315)
Q Consensus       244 ~~i~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~-~~~~s~~~~~l~s~~~d~~i~i~~~~  315 (315)
                      ..|.-+.|+|.-.++|.+..+|.|-+..++ ...+-+++.|...++ +++|.|||+.||.|=.||+|+|-|.+
T Consensus        21 ~~i~~~ewnP~~dLiA~~t~~gelli~R~n-~qRlwtip~p~~~v~~sL~W~~DGkllaVg~kdG~I~L~Dve   92 (665)
T KOG4640|consen   21 INIKRIEWNPKMDLIATRTEKGELLIHRLN-WQRLWTIPIPGENVTASLCWRPDGKLLAVGFKDGTIRLHDVE   92 (665)
T ss_pred             cceEEEEEcCccchhheeccCCcEEEEEec-cceeEeccCCCCccceeeeecCCCCEEEEEecCCeEEEEEcc
Confidence            446778999999999999999999999998 666667777777777 99999999999999999999998863

>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.29  E-value=0.0056  Score=52.85  Aligned_cols=144  Identities=17%  Similarity=0.224  Sum_probs=94.0

Q ss_pred             CCCCeEEEEecCCCeEEEEecCCcceeeeecCCCCCCCCCCccCCCCcceEEEEECCCC-------CEEEEecCCCcEEE
Q 021247          112 PKGTTLAVAGGGSASVKLWDTATWNLIATLSIPRPEGLKPTDKSSSKKFVLSVAWSPDG-------RRIACGSMDGTISV  184 (315)
Q Consensus       112 ~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-------~~l~~~s~dg~i~i  184 (315)
                      .+.+.++..+.....++-.|+..++.+..+.....              |.-+.+.|+.       ..-+.|-.+..|.-
T Consensus       343 ~dsnlil~~~~~~~~l~klDIE~GKIVeEWk~~~d--------------i~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfr  408 (644)
T KOG2395|consen  343 ADSNLILMDGGEQDKLYKLDIERGKIVEEWKFEDD--------------INMVDITPDFKFAQLTSEQTLVGLSDNSVFR  408 (644)
T ss_pred             cccceEeeCCCCcCcceeeecccceeeeEeeccCC--------------cceeeccCCcchhcccccccEEeecCCceEE
Confidence            34455666666667788889999999888765433              3333444432       12344556888999


Q ss_pred             EEcccc-e-eeeeecCCc----cceEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCeeEEEeecccccEEEEEEcCCCCeE
Q 021247          185 FDVTRA-K-FLHHLEGHF----MPVRSLVYSPVDPRVLFSASDDTHVHMYDAEGKSLVTAMSGHASWVLSVDASPDGAAI  258 (315)
Q Consensus       185 ~d~~~~-~-~~~~~~~~~----~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l  258 (315)
                      ||++-. . .+.-...|.    ....|++  ..+..+++.|+.+|.|++||.-.......+.+-..+|..+..+.+|.++
T Consensus       409 iDpRv~~~~kl~~~q~kqy~~k~nFsc~a--TT~sG~IvvgS~~GdIRLYdri~~~AKTAlPgLG~~I~hVdvtadGKwi  486 (644)
T KOG2395|consen  409 IDPRVQGKNKLAVVQSKQYSTKNNFSCFA--TTESGYIVVGSLKGDIRLYDRIGRRAKTALPGLGDAIKHVDVTADGKWI  486 (644)
T ss_pred             ecccccCcceeeeeeccccccccccceee--ecCCceEEEeecCCcEEeehhhhhhhhhcccccCCceeeEEeeccCcEE
Confidence            998622 2 122222222    1223333  2356689999999999999975555555667778899999999999987


Q ss_pred             EEEeCCCcEEEEec
Q 021247          259 TTGSSDRTVKLWDL  272 (315)
Q Consensus       259 ~s~~~d~~i~iwd~  272 (315)
                      +.. .+..+.+-++
T Consensus       487 l~T-c~tyLlLi~t  499 (644)
T KOG2395|consen  487 LAT-CKTYLLLIDT  499 (644)
T ss_pred             EEe-cccEEEEEEE
Confidence            654 4566666665

>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]

Probab=97.21  E-value=0.057  Score=49.10  Aligned_cols=217  Identities=17%  Similarity=0.178  Sum_probs=106.1

Q ss_pred             CcEEEEeeCCC------cEEEEcCCCCcceeeccc-cccceEEEEeCCCCCEEEEeeCC------CeEEEEECCCCceeE
Q 021247           30 PALLLTGSLDE------TVKLWRPDDMQLERTNTG-HCLGVVSVAAHPSGIIAASASLD------SFVRVFDVDTNASIA   96 (315)
Q Consensus        30 ~~~l~sgs~d~------~v~~w~~~~~~~~~~~~~-h~~~v~~~~~~~~g~~l~s~~~d------~~i~~w~~~~~~~~~   96 (315)
                      ..+++.||.++      .++.||+.+.+-.....- ....-.++.+ -.|.+.++||.|      .++..+|...++-..
T Consensus       285 ~~l~~vGG~~~~~~~~~~ve~yd~~~~~w~~~a~m~~~r~~~~~~~-~~~~lYv~GG~~~~~~~l~~ve~YD~~~~~W~~  363 (571)
T KOG4441|consen  285 GKLVAVGGYNRQGQSLRSVECYDPKTNEWSSLAPMPSPRCRVGVAV-LNGKLYVVGGYDSGSDRLSSVERYDPRTNQWTP  363 (571)
T ss_pred             CeEEEECCCCCCCcccceeEEecCCcCcEeecCCCCcccccccEEE-ECCEEEEEccccCCCcccceEEEecCCCCceec
Confidence            45788888774      578888765532111110 1111222222 245788889888      346677777665322


Q ss_pred             EeeCCcccEEEEEECCCCCeEEEEecCCCe-----EEEEecCCcceeeeecCCCCCCCCCCccCCCCcceEEEEECCCCC
Q 021247           97 TLEASPSEVWQMQFDPKGTTLAVAGGGSAS-----VKLWDTATWNLIATLSIPRPEGLKPTDKSSSKKFVLSVAWSPDGR  171 (315)
Q Consensus        97 ~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~-----i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~  171 (315)
                      . ..-..+-.......-+..+++.||.||.     +-.||..+.+.-..-..+.           .......+.  -+|.
T Consensus       364 ~-a~M~~~R~~~~v~~l~g~iYavGG~dg~~~l~svE~YDp~~~~W~~va~m~~-----------~r~~~gv~~--~~g~  429 (571)
T KOG4441|consen  364 V-APMNTKRSDFGVAVLDGKLYAVGGFDGEKSLNSVECYDPVTNKWTPVAPMLT-----------RRSGHGVAV--LGGK  429 (571)
T ss_pred             c-CCccCccccceeEEECCEEEEEeccccccccccEEEecCCCCcccccCCCCc-----------ceeeeEEEE--ECCE
Confidence            1 1111111111111123457777887754     5566665533321111100           011111122  2567


Q ss_pred             EEEEecCCC------cEEEEEcccceeeee--ecCCccceEEEEEcCCCCcEEEEEeCCC-----eEEEEeCCCCeeE--
Q 021247          172 RIACGSMDG------TISVFDVTRAKFLHH--LEGHFMPVRSLVYSPVDPRVLFSASDDT-----HVHMYDAEGKSLV--  236 (315)
Q Consensus       172 ~l~~~s~dg------~i~i~d~~~~~~~~~--~~~~~~~v~~~~~~~~~~~~l~s~~~d~-----~i~~wd~~~~~~~--  236 (315)
                      ..++|+.++      ++..||..+++....  +....... .++.  .++.+++.||.|+     ++..||.++.+-.  
T Consensus       430 iYi~GG~~~~~~~l~sve~YDP~t~~W~~~~~M~~~R~~~-g~a~--~~~~iYvvGG~~~~~~~~~VE~ydp~~~~W~~v  506 (571)
T KOG4441|consen  430 LYIIGGGDGSSNCLNSVECYDPETNTWTLIAPMNTRRSGF-GVAV--LNGKIYVVGGFDGTSALSSVERYDPETNQWTMV  506 (571)
T ss_pred             EEEEcCcCCCccccceEEEEcCCCCceeecCCcccccccc-eEEE--ECCEEEEECCccCCCccceEEEEcCCCCceeEc
Confidence            777887544      478899888765432  22111111 1222  2567888888775     3667887765322  


Q ss_pred             EEeecccccEEEEEEcCCCCeEEEEeCCCc
Q 021247          237 TAMSGHASWVLSVDASPDGAAITTGSSDRT  266 (315)
Q Consensus       237 ~~~~~~~~~i~~~~~~~~~~~l~s~~~d~~  266 (315)
                      ..+......+ .++ .-++++.++|+.|+.
T Consensus       507 ~~m~~~rs~~-g~~-~~~~~ly~vGG~~~~  534 (571)
T KOG4441|consen  507 APMTSPRSAV-GVV-VLGGKLYAVGGFDGN  534 (571)
T ss_pred             ccCccccccc-cEE-EECCEEEEEecccCc
Confidence            2222111111 111 125667788887764

>KOG2444 consensus WD40 repeat protein [General function prediction only]

Probab=97.19  E-value=0.0017  Score=49.80  Aligned_cols=106  Identities=12%  Similarity=0.164  Sum_probs=69.7

Q ss_pred             CCCEEEEecCCCcEEEEEcccceeeee-ecCCccceEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCeeEEEeeccc-ccE
Q 021247          169 DGRRIACGSMDGTISVFDVTRAKFLHH-LEGHFMPVRSLVYSPVDPRVLFSASDDTHVHMYDAEGKSLVTAMSGHA-SWV  246 (315)
Q Consensus       169 ~~~~l~~~s~dg~i~i~d~~~~~~~~~-~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~-~~i  246 (315)
                      -+..+++|+.+|.|.+|.....-.... ......+|.++.-.-..+.+..++..|+.|+.|+.+..+.+.....|. ..+
T Consensus        69 ~~~~~~vG~~dg~v~~~n~n~~g~~~d~~~s~~e~i~~~Ip~~~~~~~~c~~~~dg~ir~~n~~p~k~~g~~g~h~~~~~  148 (238)
T KOG2444|consen   69 ASAKLMVGTSDGAVYVFNWNLEGAHSDRVCSGEESIDLGIPNGRDSSLGCVGAQDGRIRACNIKPNKVLGYVGQHNFESG  148 (238)
T ss_pred             cCceEEeecccceEEEecCCccchHHHhhhcccccceeccccccccceeEEeccCCceeeeccccCceeeeeccccCCCc
Confidence            356899999999999998752211111 111122333222121234478899999999999999888877777777 555


Q ss_pred             EEEEEcCCCCeEEEE--eCCCcEEEEecCc
Q 021247          247 LSVDASPDGAAITTG--SSDRTVKLWDLNM  274 (315)
Q Consensus       247 ~~~~~~~~~~~l~s~--~~d~~i~iwd~~~  274 (315)
                      ..+..+..++.++.+  +.|..++.|++..
T Consensus       149 e~~ivv~sd~~i~~a~~S~d~~~k~W~ve~  178 (238)
T KOG2444|consen  149 EELIVVGSDEFLKIADTSHDRVLKKWNVEK  178 (238)
T ss_pred             ceeEEecCCceEEeeccccchhhhhcchhh
Confidence            556666666777777  7777888887753

>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]

Probab=97.18  E-value=0.047  Score=41.66  Aligned_cols=173  Identities=17%  Similarity=0.194  Sum_probs=94.4

Q ss_pred             CCCEEEEeeCC--CeEEEEECCCCceeEEeeCCcccEEEEEECCCCCeEEEEecCCCeEEEEecCCcceeeeecCCCCCC
Q 021247           71 SGIIAASASLD--SFVRVFDVDTNASIATLEASPSEVWQMQFDPKGTTLAVAGGGSASVKLWDTATWNLIATLSIPRPEG  148 (315)
Q Consensus        71 ~g~~l~s~~~d--~~i~~w~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~  148 (315)
                      +|.++.+.+.-  ..||+||+.+++.+......+..+..=-...-+..+..-.-.++.-..||.++.+.+..+..+..  
T Consensus        55 ~g~i~esTG~yg~S~ir~~~L~~gq~~~s~~l~~~~~FgEGit~~gd~~y~LTw~egvaf~~d~~t~~~lg~~~y~Ge--  132 (262)
T COG3823          55 DGHILESTGLYGFSKIRVSDLTTGQEIFSEKLAPDTVFGEGITKLGDYFYQLTWKEGVAFKYDADTLEELGRFSYEGE--  132 (262)
T ss_pred             CCEEEEeccccccceeEEEeccCceEEEEeecCCccccccceeeccceEEEEEeccceeEEEChHHhhhhcccccCCc--
Confidence            45666666543  46999999999877654433222221111122334444445677888899988877766644322  


Q ss_pred             CCCCccCCCCcceEEEEECCCCCEEEEecCCCcEEEEEcccceeeeeecC--Cccce---EEEEEcCCCCcEEEEEeCCC
Q 021247          149 LKPTDKSSSKKFVLSVAWSPDGRRIACGSMDGTISVFDVTRAKFLHHLEG--HFMPV---RSLVYSPVDPRVLFSASDDT  223 (315)
Q Consensus       149 ~~~~~~~~~~~~i~~~~~~~~~~~l~~~s~dg~i~i~d~~~~~~~~~~~~--~~~~v---~~~~~~~~~~~~l~s~~~d~  223 (315)
                                  -..++  .++..|+.+.....+..-|..+.....++.-  ...+|   +.+.|-  ++.+++-.-...
T Consensus       133 ------------GWgLt--~d~~~LimsdGsatL~frdP~tfa~~~~v~VT~~g~pv~~LNELE~V--dG~lyANVw~t~  196 (262)
T COG3823         133 ------------GWGLT--SDDKNLIMSDGSATLQFRDPKTFAELDTVQVTDDGVPVSKLNELEWV--DGELYANVWQTT  196 (262)
T ss_pred             ------------ceeee--cCCcceEeeCCceEEEecCHHHhhhcceEEEEECCeecccccceeee--ccEEEEeeeeec
Confidence                        11222  3555566665556677777765443332211  11122   233333  455555555555


Q ss_pred             eEEEEeCCCCeeEEEee------------cccccEEEEEEcCCC-CeEEEE
Q 021247          224 HVHMYDAEGKSLVTAMS------------GHASWVLSVDASPDG-AAITTG  261 (315)
Q Consensus       224 ~i~~wd~~~~~~~~~~~------------~~~~~i~~~~~~~~~-~~l~s~  261 (315)
                      .|...|.++++++..+.            .|..-.+.+++.|++ ++++||
T Consensus       197 ~I~rI~p~sGrV~~widlS~L~~~~~~~~~~~nvlNGIA~~~~~~r~~iTG  247 (262)
T COG3823         197 RIARIDPDSGRVVAWIDLSGLLKELNLDKSNDNVLNGIAHDPQQDRFLITG  247 (262)
T ss_pred             ceEEEcCCCCcEEEEEEccCCchhcCccccccccccceeecCcCCeEEEec
Confidence            56666666666554332            234456778888876 555655

>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]

Probab=97.16  E-value=0.069  Score=48.54  Aligned_cols=220  Identities=21%  Similarity=0.212  Sum_probs=111.4

Q ss_pred             CCCCCEEEEeeCCC------eEEEEECCCCceeEEeeC-CcccEEEEEECCCCCeEEEEecCC------CeEEEEecCCc
Q 021247           69 HPSGIIAASASLDS------FVRVFDVDTNASIATLEA-SPSEVWQMQFDPKGTTLAVAGGGS------ASVKLWDTATW  135 (315)
Q Consensus        69 ~~~g~~l~s~~~d~------~i~~w~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~~~~~d------~~i~~~d~~~~  135 (315)
                      +..+.+++.||.++      .+..+|..++.-...... .+..-.+++..  ++.++++||.+      ..+..||.+..
T Consensus       282 ~~~~~l~~vGG~~~~~~~~~~ve~yd~~~~~w~~~a~m~~~r~~~~~~~~--~~~lYv~GG~~~~~~~l~~ve~YD~~~~  359 (571)
T KOG4441|consen  282 SVSGKLVAVGGYNRQGQSLRSVECYDPKTNEWSSLAPMPSPRCRVGVAVL--NGKLYVVGGYDSGSDRLSSVERYDPRTN  359 (571)
T ss_pred             CCCCeEEEECCCCCCCcccceeEEecCCcCcEeecCCCCcccccccEEEE--CCEEEEEccccCCCcccceEEEecCCCC
Confidence            33456777777773      577888877643322111 11122233333  23677888887      35777888776


Q ss_pred             ceeeeecCCCCCCCCCCccCCCCcceEEEEECCCCCEEEEecCCCc-----EEEEEcccceeeeeecCCccceEEEEEcC
Q 021247          136 NLIATLSIPRPEGLKPTDKSSSKKFVLSVAWSPDGRRIACGSMDGT-----ISVFDVTRAKFLHHLEGHFMPVRSLVYSP  210 (315)
Q Consensus       136 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~s~dg~-----i~i~d~~~~~~~~~~~~~~~~v~~~~~~~  210 (315)
                      +....-....+           .... +++. -+|...++|+.||.     +-.||..+.+.-..-... ..........
T Consensus       360 ~W~~~a~M~~~-----------R~~~-~v~~-l~g~iYavGG~dg~~~l~svE~YDp~~~~W~~va~m~-~~r~~~gv~~  425 (571)
T KOG4441|consen  360 QWTPVAPMNTK-----------RSDF-GVAV-LDGKLYAVGGFDGEKSLNSVECYDPVTNKWTPVAPML-TRRSGHGVAV  425 (571)
T ss_pred             ceeccCCccCc-----------cccc-eeEE-ECCEEEEEeccccccccccEEEecCCCCcccccCCCC-cceeeeEEEE
Confidence            54431111100           0001 1111 25677788888874     777888776643221111 1222222223


Q ss_pred             CCCcEEEEEeCCC------eEEEEeCCCCee--EEEeecccccEEEEEEcCCCCeEEEEeCCCc-----EEEEecCcc--
Q 021247          211 VDPRVLFSASDDT------HVHMYDAEGKSL--VTAMSGHASWVLSVDASPDGAAITTGSSDRT-----VKLWDLNMR--  275 (315)
Q Consensus       211 ~~~~~l~s~~~d~------~i~~wd~~~~~~--~~~~~~~~~~i~~~~~~~~~~~l~s~~~d~~-----i~iwd~~~~--  275 (315)
                      .++.+.+.||.++      .+..||..+.+-  +..+..-.... .++ .-++.+.+.||.|+.     |..+|..+.  
T Consensus       426 ~~g~iYi~GG~~~~~~~l~sve~YDP~t~~W~~~~~M~~~R~~~-g~a-~~~~~iYvvGG~~~~~~~~~VE~ydp~~~~W  503 (571)
T KOG4441|consen  426 LGGKLYIIGGGDGSSNCLNSVECYDPETNTWTLIAPMNTRRSGF-GVA-VLNGKIYVVGGFDGTSALSSVERYDPETNQW  503 (571)
T ss_pred             ECCEEEEEcCcCCCccccceEEEEcCCCCceeecCCcccccccc-eEE-EECCEEEEECCccCCCccceEEEEcCCCCce
Confidence            3677888888554      467888776532  22222111111 122 235677888888763     667776543  


Q ss_pred             ceehcccccccceEEEEEeeCCCEEEEEeCCCc
Q 021247          276 AAMQSMTNHTDQVWGVSFRPLGGRVVSVSDDKS  308 (315)
Q Consensus       276 ~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~  308 (315)
                      ..+..+......+..+..  ++...+.||.||.
T Consensus       504 ~~v~~m~~~rs~~g~~~~--~~~ly~vGG~~~~  534 (571)
T KOG4441|consen  504 TMVAPMTSPRSAVGVVVL--GGKLYAVGGFDGN  534 (571)
T ss_pred             eEcccCccccccccEEEE--CCEEEEEecccCc
Confidence            233323322222222222  3445577777763

>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase

Probab=97.12  E-value=0.11  Score=42.57  Aligned_cols=229  Identities=15%  Similarity=0.158  Sum_probs=116.6

Q ss_pred             CCCCCEEEEeeCCCeEEEEECCCC-ceeEEeeCCcccEEEEEECCCCCeEEEEecCCCeEEEEecCCcceeeeec-CCCC
Q 021247           69 HPSGIIAASASLDSFVRVFDVDTN-ASIATLEASPSEVWQMQFDPKGTTLAVAGGGSASVKLWDTATWNLIATLS-IPRP  146 (315)
Q Consensus        69 ~~~g~~l~s~~~d~~i~~w~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~-~~~~  146 (315)
                      ...++.|+.|..+| +.+++.... .......  ..+|..+...|.-+.+++-  .|+++.++++.......... ...+
T Consensus         4 ~~~~~~L~vGt~~G-l~~~~~~~~~~~~~i~~--~~~I~ql~vl~~~~~llvL--sd~~l~~~~L~~l~~~~~~~~~~~~   78 (275)
T PF00780_consen    4 DSWGDRLLVGTEDG-LYVYDLSDPSKPTRILK--LSSITQLSVLPELNLLLVL--SDGQLYVYDLDSLEPVSTSAPLAFP   78 (275)
T ss_pred             ccCCCEEEEEECCC-EEEEEecCCccceeEee--cceEEEEEEecccCEEEEE--cCCccEEEEchhhcccccccccccc
Confidence            34677888888888 999998332 2222222  2238888888876665554  35999999987644332110 0000


Q ss_pred             CCCCCCccCCCCcceEEEE--ECCCCCEEEEecCCCcEEEEEcccc-----eeeeeecCCccceEEEEEcCCCCcEEEEE
Q 021247          147 EGLKPTDKSSSKKFVLSVA--WSPDGRRIACGSMDGTISVFDVTRA-----KFLHHLEGHFMPVRSLVYSPVDPRVLFSA  219 (315)
Q Consensus       147 ~~~~~~~~~~~~~~i~~~~--~~~~~~~l~~~s~dg~i~i~d~~~~-----~~~~~~~~~~~~v~~~~~~~~~~~~l~s~  219 (315)
                      ..............+...+  -...+...++......|.+|.....     +....+.. ...+..+.|.+   ..++.|
T Consensus        79 ~~~~~~~~~~~~~~v~~f~~~~~~~~~~~L~va~kk~i~i~~~~~~~~~f~~~~ke~~l-p~~~~~i~~~~---~~i~v~  154 (275)
T PF00780_consen   79 KSRSLPTKLPETKGVSFFAVNGGHEGSRRLCVAVKKKILIYEWNDPRNSFSKLLKEISL-PDPPSSIAFLG---NKICVG  154 (275)
T ss_pred             ccccccccccccCCeeEEeeccccccceEEEEEECCEEEEEEEECCcccccceeEEEEc-CCCcEEEEEeC---CEEEEE
Confidence            0000000001111233333  1223444444445558888877542     33444443 35678888873   355555


Q ss_pred             eCCCeEEEEeCCCCeeEEEee--c----------ccccEEEEEEcCCCCeEEEEeCCCcEEEEecCccceeh-ccccccc
Q 021247          220 SDDTHVHMYDAEGKSLVTAMS--G----------HASWVLSVDASPDGAAITTGSSDRTVKLWDLNMRAAMQ-SMTNHTD  286 (315)
Q Consensus       220 ~~d~~i~~wd~~~~~~~~~~~--~----------~~~~i~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~-~~~~~~~  286 (315)
                      ..++ ..+.|+.++.......  .          ...++..+.. +++.+|+.-  |..-.+.|.. |++.+ ..-.-..
T Consensus       155 ~~~~-f~~idl~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~e~Ll~~--~~~g~fv~~~-G~~~r~~~i~W~~  229 (275)
T PF00780_consen  155 TSKG-FYLIDLNTGSPSELLDPSDSSSSFKSRNSSSKPLGIFQL-SDNEFLLCY--DNIGVFVNKN-GEPSRKSTIQWSS  229 (275)
T ss_pred             eCCc-eEEEecCCCCceEEeCccCCcchhhhcccCCCceEEEEe-CCceEEEEe--cceEEEEcCC-CCcCcccEEEcCC
Confidence            5444 6677877554332221  1          1122333333 345666542  3333333443 43332 1112234


Q ss_pred             ceEEEEEeeCCCEEEEEeCCCcEEEeec
Q 021247          287 QVWGVSFRPLGGRVVSVSDDKSISLYEY  314 (315)
Q Consensus       287 ~v~~~~~s~~~~~l~s~~~d~~i~i~~~  314 (315)
                      .+.++++..  .+|+..+.++ |.||++
T Consensus       230 ~p~~~~~~~--pyli~~~~~~-iEV~~~  254 (275)
T PF00780_consen  230 APQSVAYSS--PYLIAFSSNS-IEVRSL  254 (275)
T ss_pred             chhEEEEEC--CEEEEECCCE-EEEEEC
Confidence            556666643  4888877755 998875

These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity

>KOG2444 consensus WD40 repeat protein [General function prediction only]

Probab=97.08  E-value=0.0013  Score=50.55  Aligned_cols=140  Identities=11%  Similarity=0.065  Sum_probs=80.5

Q ss_pred             EEEEecCCCcEEEEEcccceeeeeecCCccceEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCeeEEEe-ecccccEEE-E
Q 021247          172 RIACGSMDGTISVFDVTRAKFLHHLEGHFMPVRSLVYSPVDPRVLFSASDDTHVHMYDAEGKSLVTAM-SGHASWVLS-V  249 (315)
Q Consensus       172 ~l~~~s~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~-~~~~~~i~~-~  249 (315)
                      .+..-+.+|.+.-++++..+....-..   .+.+..--+....-++.|+.+|.|.+|.....-..... ......|-+ +
T Consensus        32 ~l~~~sa~~~v~~~~~~k~k~s~rse~---~~~e~~~v~~~~~~~~vG~~dg~v~~~n~n~~g~~~d~~~s~~e~i~~~I  108 (238)
T KOG2444|consen   32 LLRATSADGLVRERKVRKHKESCRSER---FIDEGQRVVTASAKLMVGTSDGAVYVFNWNLEGAHSDRVCSGEESIDLGI  108 (238)
T ss_pred             hhccccCCcccccchhhhhhhhhhhhh---hhhcceeecccCceEEeecccceEEEecCCccchHHHhhhcccccceecc
Confidence            345556777777777654332111100   01111111224457889999999999987522111111 111112222 2


Q ss_pred             EEcCCCCeEEEEeCCCcEEEEecCccceehcccccc-cceEEEEEeeCCCEEEEE--eCCCcEEEeec
Q 021247          250 DASPDGAAITTGSSDRTVKLWDLNMRAAMQSMTNHT-DQVWGVSFRPLGGRVVSV--SDDKSISLYEY  314 (315)
Q Consensus       250 ~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~-~~v~~~~~s~~~~~l~s~--~~d~~i~i~~~  314 (315)
                      ..-.++.+..+++.||.||.|++.-.+.+.....|+ .++.....+..++.|+..  |.|..++.|++
T Consensus       109 p~~~~~~~~c~~~~dg~ir~~n~~p~k~~g~~g~h~~~~~e~~ivv~sd~~i~~a~~S~d~~~k~W~v  176 (238)
T KOG2444|consen  109 PNGRDSSLGCVGAQDGRIRACNIKPNKVLGYVGQHNFESGEELIVVGSDEFLKIADTSHDRVLKKWNV  176 (238)
T ss_pred             ccccccceeEEeccCCceeeeccccCceeeeeccccCCCcceeEEecCCceEEeeccccchhhhhcch
Confidence            222245588999999999999998877777666676 555555555566666666  77777777765

>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain

Probab=96.97  E-value=0.0041  Score=35.37  Aligned_cols=30  Identities=30%  Similarity=0.563  Sum_probs=27.4

Q ss_pred             cceEEEEECCCCCEEEEecCCCcEEEEEcc
Q 021247          159 KFVLSVAWSPDGRRIACGSMDGTISVFDVT  188 (315)
Q Consensus       159 ~~i~~~~~~~~~~~l~~~s~dg~i~i~d~~  188 (315)
                      ..|..++|+|..++||.++.+|.|.+|.+.
T Consensus        12 ~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl~   41 (47)
T PF12894_consen   12 SRVSCMSWCPTMDLIALGTEDGEVLVYRLN   41 (47)
T ss_pred             CcEEEEEECCCCCEEEEEECCCeEEEEECC
Confidence            348899999999999999999999999983

>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=96.93  E-value=0.24  Score=43.32  Aligned_cols=250  Identities=15%  Similarity=0.090  Sum_probs=122.7

Q ss_pred             hhhccc-cceEEEEEeecCCCCCcEEEEeeCCCc----EEEEcCCCCcceeeccccccceEEEEeCCCCCEEEEeeCCC-
Q 021247            9 VENAHE-ESVWAVTWVPATETRPALLLTGSLDET----VKLWRPDDMQLERTNTGHCLGVVSVAAHPSGIIAASASLDS-   82 (315)
Q Consensus         9 ~~~~h~-~~v~~v~~~~~~~~~~~~l~sgs~d~~----v~~w~~~~~~~~~~~~~h~~~v~~~~~~~~g~~l~s~~~d~-   82 (315)
                      .+.++. -.+....++|+++   -++++-+..|.    ++++|.++++.....-.. .....+.|.+++..++-...+. 
T Consensus       117 l~~~~~~~~~~~~~~Spdg~---~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~i~~-~~~~~~~W~~d~~~~~y~~~~~~  192 (414)
T PF02897_consen  117 LAKDGGYVSLGGFSVSPDGK---RLAYSLSDGGSEWYTLRVFDLETGKFLPDGIEN-PKFSSVSWSDDGKGFFYTRFDED  192 (414)
T ss_dssp             GSTTSS-EEEEEEEETTTSS---EEEEEEEETTSSEEEEEEEETTTTEEEEEEEEE-EESEEEEECTTSSEEEEEECSTT
T ss_pred             hhccCceEEeeeeeECCCCC---EEEEEecCCCCceEEEEEEECCCCcCcCCcccc-cccceEEEeCCCCEEEEEEeCcc
Confidence            334442 2333455666554   24555455554    899999888654432111 1122389999988766554333 


Q ss_pred             ----------eEEEEECCCCcee--EEeeCCccc--EEEEEECCCCCeEEEEecCC---CeEEEEecCCc----ceeeee
Q 021247           83 ----------FVRVFDVDTNASI--ATLEASPSE--VWQMQFDPKGTTLAVAGGGS---ASVKLWDTATW----NLIATL  141 (315)
Q Consensus        83 ----------~i~~w~~~~~~~~--~~~~~~~~~--v~~~~~~~~~~~~~~~~~~d---~~i~~~d~~~~----~~~~~~  141 (315)
                                .|+.|.+.+...-  ..+......  ...+..+++++++++.....   ..+.+.|+...    .....+
T Consensus       193 ~~~~~~~~~~~v~~~~~gt~~~~d~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~~~~~~~~~~~l  272 (414)
T PF02897_consen  193 QRTSDSGYPRQVYRHKLGTPQSEDELVFEEPDEPFWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLDDGGSPDAKPKLL  272 (414)
T ss_dssp             TSS-CCGCCEEEEEEETTS-GGG-EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECCCTTTSS-SEEEE
T ss_pred             cccccCCCCcEEEEEECCCChHhCeeEEeecCCCcEEEEEEecCcccEEEEEEEccccCCeEEEEeccccCCCcCCcEEE
Confidence                      3788888776542  444443333  56788899999887654433   45777777653    111111


Q ss_pred             cCCCCCCCCCCccCCCCcceEEEEECCCCCEEEEe---cCCCcEEEEEccccee---eeeecCCcc--ceEEEEEcCCCC
Q 021247          142 SIPRPEGLKPTDKSSSKKFVLSVAWSPDGRRIACG---SMDGTISVFDVTRAKF---LHHLEGHFM--PVRSLVYSPVDP  213 (315)
Q Consensus       142 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~---s~dg~i~i~d~~~~~~---~~~~~~~~~--~v~~~~~~~~~~  213 (315)
                      ..+.            ......+... .+.+++..   ..++.|...++.....   ...+..+..  .+..+..  .+.
T Consensus       273 ~~~~------------~~~~~~v~~~-~~~~yi~Tn~~a~~~~l~~~~l~~~~~~~~~~~l~~~~~~~~l~~~~~--~~~  337 (414)
T PF02897_consen  273 SPRE------------DGVEYYVDHH-GDRLYILTNDDAPNGRLVAVDLADPSPAEWWTVLIPEDEDVSLEDVSL--FKD  337 (414)
T ss_dssp             EESS------------SS-EEEEEEE-TTEEEEEE-TT-TT-EEEEEETTSTSGGGEEEEEE--SSSEEEEEEEE--ETT
T ss_pred             eCCC------------CceEEEEEcc-CCEEEEeeCCCCCCcEEEEecccccccccceeEEcCCCCceeEEEEEE--ECC
Confidence            1110            0111222222 33333322   2345677777765542   224444444  3444443  355


Q ss_pred             cEEEEEeCCC--eEEEEeCC-CCeeEEEeecccccEEEEEEcCCCCeE-EEE-eCC--CcEEEEecCccce
Q 021247          214 RVLFSASDDT--HVHMYDAE-GKSLVTAMSGHASWVLSVDASPDGAAI-TTG-SSD--RTVKLWDLNMRAA  277 (315)
Q Consensus       214 ~~l~s~~~d~--~i~~wd~~-~~~~~~~~~~~~~~i~~~~~~~~~~~l-~s~-~~d--~~i~iwd~~~~~~  277 (315)
                      .+++..-.++  .|.+++.. +.........-.+.|..+...+++..+ ++- +--  +++..+|+.+++.
T Consensus       338 ~Lvl~~~~~~~~~l~v~~~~~~~~~~~~~~p~~g~v~~~~~~~~~~~~~~~~ss~~~P~~~y~~d~~t~~~  408 (414)
T PF02897_consen  338 YLVLSYRENGSSRLRVYDLDDGKESREIPLPEAGSVSGVSGDFDSDELRFSYSSFTTPPTVYRYDLATGEL  408 (414)
T ss_dssp             EEEEEEEETTEEEEEEEETT-TEEEEEEESSSSSEEEEEES-TT-SEEEEEEEETTEEEEEEEEETTTTCE
T ss_pred             EEEEEEEECCccEEEEEECCCCcEEeeecCCcceEEeccCCCCCCCEEEEEEeCCCCCCEEEEEECCCCCE
Confidence            6666666665  47888988 443333222233445555545544322 222 221  3466666666543

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....

>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=96.93  E-value=0.25  Score=43.28  Aligned_cols=226  Identities=17%  Similarity=0.133  Sum_probs=115.3

Q ss_pred             ceEEEEeCCCCCEEE-EeeCC----CeEEEEECCCCceeEEe-eCCcccEEEEEECCCCCeEEEEecCC----------C
Q 021247           62 GVVSVAAHPSGIIAA-SASLD----SFVRVFDVDTNASIATL-EASPSEVWQMQFDPKGTTLAVAGGGS----------A  125 (315)
Q Consensus        62 ~v~~~~~~~~g~~l~-s~~~d----~~i~~w~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~~~~~~d----------~  125 (315)
                      .+....++|+|++++ +.+..    ..+++.|+.+++.+... ... . -..+.|.++++.++.+...+          .
T Consensus       125 ~~~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~i~~~-~-~~~~~W~~d~~~~~y~~~~~~~~~~~~~~~~  202 (414)
T PF02897_consen  125 SLGGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPDGIENP-K-FSSVSWSDDGKGFFYTRFDEDQRTSDSGYPR  202 (414)
T ss_dssp             EEEEEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEEEEEEEE-E-SEEEEECTTSSEEEEEECSTTTSS-CCGCCE
T ss_pred             EeeeeeECCCCCEEEEEecCCCCceEEEEEEECCCCcCcCCccccc-c-cceEEEeCCCCEEEEEEeCcccccccCCCCc
Confidence            444678999999877 33333    34999999999765432 221 1 12389999988877765333          2


Q ss_pred             eEEEEecCCcceeeeecCCCCCCCCCCccCCCCcceEEEEECCCCCEEEEec---CC-CcEEEEEcccc----eeeeeec
Q 021247          126 SVKLWDTATWNLIATLSIPRPEGLKPTDKSSSKKFVLSVAWSPDGRRIACGS---MD-GTISVFDVTRA----KFLHHLE  197 (315)
Q Consensus       126 ~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~s---~d-g~i~i~d~~~~----~~~~~~~  197 (315)
                      .|..|.+.+......+-...+         ........+..++++++|+..+   .+ ..+++.|+..+    .....+.
T Consensus       203 ~v~~~~~gt~~~~d~lvfe~~---------~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~~~~~~~~~~~l~  273 (414)
T PF02897_consen  203 QVYRHKLGTPQSEDELVFEEP---------DEPFWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLDDGGSPDAKPKLLS  273 (414)
T ss_dssp             EEEEEETTS-GGG-EEEEC-T---------TCTTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECCCTTTSS-SEEEEE
T ss_pred             EEEEEECCCChHhCeeEEeec---------CCCcEEEEEEecCcccEEEEEEEccccCCeEEEEeccccCCCcCCcEEEe
Confidence            467777765432211111111         0111256788899999876532   23 46888888764    2233333


Q ss_pred             CCccceEEEEEcCCCCcEEEEEeC---CCeEEEEeCCCCee---EEEeecccc--cEEEEEEcCCCCeEEEEeCCC--cE
Q 021247          198 GHFMPVRSLVYSPVDPRVLFSASD---DTHVHMYDAEGKSL---VTAMSGHAS--WVLSVDASPDGAAITTGSSDR--TV  267 (315)
Q Consensus       198 ~~~~~v~~~~~~~~~~~~l~s~~~---d~~i~~wd~~~~~~---~~~~~~~~~--~i~~~~~~~~~~~l~s~~~d~--~i  267 (315)
                      .....+....-+. ++.+++....   .+.|...++.....   ...+..+..  .+..+.... +.+++.--.++  .|
T Consensus       274 ~~~~~~~~~v~~~-~~~~yi~Tn~~a~~~~l~~~~l~~~~~~~~~~~l~~~~~~~~l~~~~~~~-~~Lvl~~~~~~~~~l  351 (414)
T PF02897_consen  274 PREDGVEYYVDHH-GDRLYILTNDDAPNGRLVAVDLADPSPAEWWTVLIPEDEDVSLEDVSLFK-DYLVLSYRENGSSRL  351 (414)
T ss_dssp             ESSSS-EEEEEEE-TTEEEEEE-TT-TT-EEEEEETTSTSGGGEEEEEE--SSSEEEEEEEEET-TEEEEEEEETTEEEE
T ss_pred             CCCCceEEEEEcc-CCEEEEeeCCCCCCcEEEEecccccccccceeEEcCCCCceeEEEEEEEC-CEEEEEEEECCccEE
Confidence            2333332222222 4444444432   45677777765432   224444444  455555432 33455555555  47


Q ss_pred             EEEecC-ccceehcccccccceEEEEEeeCCCEE
Q 021247          268 KLWDLN-MRAAMQSMTNHTDQVWGVSFRPLGGRV  300 (315)
Q Consensus       268 ~iwd~~-~~~~~~~~~~~~~~v~~~~~s~~~~~l  300 (315)
                      +++++. ..........-.+.|..+...+++..+
T Consensus       352 ~v~~~~~~~~~~~~~~p~~g~v~~~~~~~~~~~~  385 (414)
T PF02897_consen  352 RVYDLDDGKESREIPLPEAGSVSGVSGDFDSDEL  385 (414)
T ss_dssp             EEEETT-TEEEEEEESSSSSEEEEEES-TT-SEE
T ss_pred             EEEECCCCcEEeeecCCcceEEeccCCCCCCCEE
Confidence            888988 433322211122345555555555544

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....

>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]

Probab=96.88  E-value=0.11  Score=43.22  Aligned_cols=153  Identities=16%  Similarity=0.147  Sum_probs=88.4

Q ss_pred             ceEEEEeCCCCCEEEEeeC---------CCeEEEEECC-CCceeEEeeCCcccEEEEEECCCCCeEEEEecCCCeEEEEe
Q 021247           62 GVVSVAAHPSGIIAASASL---------DSFVRVFDVD-TNASIATLEASPSEVWQMQFDPKGTTLAVAGGGSASVKLWD  131 (315)
Q Consensus        62 ~v~~~~~~~~g~~l~s~~~---------d~~i~~w~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~~d  131 (315)
                      ..+.+.+.|+|.+.++...         ...=.||.+. .+..+..+..+-..-+.++|+|+++.++++=+..+.|.-|+
T Consensus       112 r~ND~~v~pdG~~wfgt~~~~~~~~~~~~~~G~lyr~~p~g~~~~l~~~~~~~~NGla~SpDg~tly~aDT~~~~i~r~~  191 (307)
T COG3386         112 RPNDGVVDPDGRIWFGDMGYFDLGKSEERPTGSLYRVDPDGGVVRLLDDDLTIPNGLAFSPDGKTLYVADTPANRIHRYD  191 (307)
T ss_pred             CCCceeEcCCCCEEEeCCCccccCccccCCcceEEEEcCCCCEEEeecCcEEecCceEECCCCCEEEEEeCCCCeEEEEe
Confidence            3456777888877664433         1112345554 44455544444455678999999998888777778888887


Q ss_pred             cCCcceeeeecCCCCCCCCCCccCCCCcceEEEEECCCCCEEEEecCCC-cEEEEEcccceeeeeecCCccceEEEEEcC
Q 021247          132 TATWNLIATLSIPRPEGLKPTDKSSSKKFVLSVAWSPDGRRIACGSMDG-TISVFDVTRAKFLHHLEGHFMPVRSLVYSP  210 (315)
Q Consensus       132 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~s~dg-~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~  210 (315)
                      +....    ......  .............-.++...+|++-+++..+| .|..|+.. ++.+..+......+.+++|--
T Consensus       192 ~d~~~----g~~~~~--~~~~~~~~~~G~PDG~~vDadG~lw~~a~~~g~~v~~~~pd-G~l~~~i~lP~~~~t~~~FgG  264 (307)
T COG3386         192 LDPAT----GPIGGR--RGFVDFDEEPGLPDGMAVDADGNLWVAAVWGGGRVVRFNPD-GKLLGEIKLPVKRPTNPAFGG  264 (307)
T ss_pred             cCccc----CccCCc--ceEEEccCCCCCCCceEEeCCCCEEEecccCCceEEEECCC-CcEEEEEECCCCCCccceEeC
Confidence            75300    000000  00000011122344678888888775554444 89999988 888877776655666777753


Q ss_pred             CC-CcEEEEEeC
Q 021247          211 VD-PRVLFSASD  221 (315)
Q Consensus       211 ~~-~~~l~s~~~  221 (315)
                      .+ ..+++++..
T Consensus       265 ~~~~~L~iTs~~  276 (307)
T COG3386         265 PDLNTLYITSAR  276 (307)
T ss_pred             CCcCEEEEEecC
Confidence            22 334444443

>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]

Probab=96.84  E-value=0.007  Score=56.53  Aligned_cols=101  Identities=23%  Similarity=0.355  Sum_probs=74.8

Q ss_pred             CCCEEEEecCCCcEEEEEccccee-eeeecCCccceEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCeeEEEeecccccEE
Q 021247          169 DGRRIACGSMDGTISVFDVTRAKF-LHHLEGHFMPVRSLVYSPVDPRVLFSASDDTHVHMYDAEGKSLVTAMSGHASWVL  247 (315)
Q Consensus       169 ~~~~l~~~s~dg~i~i~d~~~~~~-~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~i~  247 (315)
                      .+..++.|+..|.+...|+.++-. ...-..-..+|.+++|+. ++++++.|-.+|.|.+||+..+++.+.+..|..+..
T Consensus        98 ~~~~ivi~Ts~ghvl~~d~~~nL~~~~~ne~v~~~Vtsvafn~-dg~~l~~G~~~G~V~v~D~~~~k~l~~i~e~~ap~t  176 (1206)
T KOG2079|consen   98 VVVPIVIGTSHGHVLLSDMTGNLGPLHQNERVQGPVTSVAFNQ-DGSLLLAGLGDGHVTVWDMHRAKILKVITEHGAPVT  176 (1206)
T ss_pred             eeeeEEEEcCchhhhhhhhhcccchhhcCCccCCcceeeEecC-CCceeccccCCCcEEEEEccCCcceeeeeecCCccc
Confidence            456788999999999999865421 111222357999999986 788999999999999999999888887776654443


Q ss_pred             ---EEEEcCCCCeEEEEeCCCcEEEEec
Q 021247          248 ---SVDASPDGAAITTGSSDRTVKLWDL  272 (315)
Q Consensus       248 ---~~~~~~~~~~l~s~~~d~~i~iwd~  272 (315)
                         .+.+..++..+.++...|.  +|.+
T Consensus       177 ~vi~v~~t~~nS~llt~D~~Gs--f~~l  202 (1206)
T KOG2079|consen  177 GVIFVGRTSQNSKLLTSDTGGS--FWKL  202 (1206)
T ss_pred             eEEEEEEeCCCcEEEEccCCCc--eEEE
Confidence               3445556668888888886  5654

>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]

Probab=96.83  E-value=0.0041  Score=58.02  Aligned_cols=99  Identities=21%  Similarity=0.341  Sum_probs=73.1

Q ss_pred             CcEEEEEeCCCeEEEEeCCCC-eeEEEeecccccEEEEEEcCCCCeEEEEeCCCcEEEEecCccceehcccccccceEEE
Q 021247          213 PRVLFSASDDTHVHMYDAEGK-SLVTAMSGHASWVLSVDASPDGAAITTGSSDRTVKLWDLNMRAAMQSMTNHTDQVWGV  291 (315)
Q Consensus       213 ~~~l~s~~~d~~i~~wd~~~~-~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~  291 (315)
                      .-.++.|++.|++...|..+. .....-..-.+++.+++|+.+|+.++.|-.+|.|.+||...++.++.+..|..+.+++
T Consensus        99 ~~~ivi~Ts~ghvl~~d~~~nL~~~~~ne~v~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~~k~l~~i~e~~ap~t~v  178 (1206)
T KOG2079|consen   99 VVPIVIGTSHGHVLLSDMTGNLGPLHQNERVQGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHRAKILKVITEHGAPVTGV  178 (1206)
T ss_pred             eeeEEEEcCchhhhhhhhhcccchhhcCCccCCcceeeEecCCCceeccccCCCcEEEEEccCCcceeeeeecCCccceE
Confidence            345788888899988887653 1111112235789999999999999999999999999999999888888777766655


Q ss_pred             EEe---eCCCEEEEEeCCCcEEEee
Q 021247          292 SFR---PLGGRVVSVSDDKSISLYE  313 (315)
Q Consensus       292 ~~s---~~~~~l~s~~~d~~i~i~~  313 (315)
                      -++   .++..++++...|.  +|+
T Consensus       179 i~v~~t~~nS~llt~D~~Gs--f~~  201 (1206)
T KOG2079|consen  179 IFVGRTSQNSKLLTSDTGGS--FWK  201 (1206)
T ss_pred             EEEEEeCCCcEEEEccCCCc--eEE
Confidence            443   34556777777776  454

>PHA03098 kelch-like protein; Provisional

Probab=96.54  E-value=0.37  Score=43.81  Aligned_cols=184  Identities=13%  Similarity=0.148  Sum_probs=84.7

Q ss_pred             CCCCEEEEeeCCC------eEEEEECCCCceeEEeeCC-c-ccEEEEEECCCCCeEEEEecCC-----CeEEEEecCCcc
Q 021247           70 PSGIIAASASLDS------FVRVFDVDTNASIATLEAS-P-SEVWQMQFDPKGTTLAVAGGGS-----ASVKLWDTATWN  136 (315)
Q Consensus        70 ~~g~~l~s~~~d~------~i~~w~~~~~~~~~~~~~~-~-~~v~~~~~~~~~~~~~~~~~~d-----~~i~~~d~~~~~  136 (315)
                      .++.+++.||.++      .+..+|..+++-...-... + .....+.+   +..+++.||.+     ..+..||..+.+
T Consensus       293 ~~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~R~~~~~~~~---~~~lyv~GG~~~~~~~~~v~~yd~~~~~  369 (534)
T PHA03098        293 LNNVIYFIGGMNKNNLSVNSVVSYDTKTKSWNKVPELIYPRKNPGVTVF---NNRIYVIGGIYNSISLNTVESWKPGESK  369 (534)
T ss_pred             ECCEEEEECCCcCCCCeeccEEEEeCCCCeeeECCCCCcccccceEEEE---CCEEEEEeCCCCCEecceEEEEcCCCCc
Confidence            3455666666543      4677787765542211111 0 11112222   23455666654     346677876654


Q ss_pred             eeeeecCCCCCCCCCCccCCCCcceEEEEECCCCCEEEEecCC------CcEEEEEcccceeeeee--cCCccceEEEEE
Q 021247          137 LIATLSIPRPEGLKPTDKSSSKKFVLSVAWSPDGRRIACGSMD------GTISVFDVTRAKFLHHL--EGHFMPVRSLVY  208 (315)
Q Consensus       137 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~s~d------g~i~i~d~~~~~~~~~~--~~~~~~v~~~~~  208 (315)
                      ....-..+.+       ...+     +++. -+++..+.|+.+      ..+..||+.+++....-  ...... .++..
T Consensus       370 W~~~~~lp~~-------r~~~-----~~~~-~~~~iYv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~-~~~~~  435 (534)
T PHA03098        370 WREEPPLIFP-------RYNP-----CVVN-VNNLIYVIGGISKNDELLKTVECFSLNTNKWSKGSPLPISHYG-GCAIY  435 (534)
T ss_pred             eeeCCCcCcC-------Cccc-----eEEE-ECCEEEEECCcCCCCcccceEEEEeCCCCeeeecCCCCccccC-ceEEE
Confidence            4321111110       1111     1121 245666666632      35888998876653321  111111 11222


Q ss_pred             cCCCCcEEEEEeCC--------CeEEEEeCCCCeeEE--EeecccccEEEEEEcCCCCeEEEEeCC-----CcEEEEecC
Q 021247          209 SPVDPRVLFSASDD--------THVHMYDAEGKSLVT--AMSGHASWVLSVDASPDGAAITTGSSD-----RTVKLWDLN  273 (315)
Q Consensus       209 ~~~~~~~l~s~~~d--------~~i~~wd~~~~~~~~--~~~~~~~~i~~~~~~~~~~~l~s~~~d-----~~i~iwd~~  273 (315)
                      .  ++.+++.||.+        ..+.+||..+.+-..  .+.........+.  .++++++.||.+     ..|.++|..
T Consensus       436 ~--~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~v~~yd~~  511 (534)
T PHA03098        436 H--DGKIYVIGGISYIDNIKVYNIVESYNPVTNKWTELSSLNFPRINASLCI--FNNKIYVVGGDKYEYYINEIEVYDDK  511 (534)
T ss_pred             E--CCEEEEECCccCCCCCcccceEEEecCCCCceeeCCCCCcccccceEEE--ECCEEEEEcCCcCCcccceeEEEeCC
Confidence            2  45666766642        237888887653221  1111011111122  256677777654     457778776


Q ss_pred             c
Q 021247          274 M  274 (315)
Q Consensus       274 ~  274 (315)
                      +
T Consensus       512 ~  512 (534)
T PHA03098        512 T  512 (534)
T ss_pred             C
Confidence            5

>PHA03098 kelch-like protein; Provisional

Probab=96.53  E-value=0.28  Score=44.51  Aligned_cols=139  Identities=12%  Similarity=0.063  Sum_probs=66.5

Q ss_pred             CCCEEEEecCC-----CcEEEEEcccceeeee--ecCCccceEEEEEcCCCCcEEEEEeCC------CeEEEEeCCCCee
Q 021247          169 DGRRIACGSMD-----GTISVFDVTRAKFLHH--LEGHFMPVRSLVYSPVDPRVLFSASDD------THVHMYDAEGKSL  235 (315)
Q Consensus       169 ~~~~l~~~s~d-----g~i~i~d~~~~~~~~~--~~~~~~~v~~~~~~~~~~~~l~s~~~d------~~i~~wd~~~~~~  235 (315)
                      +++.++.|+.+     ..+..||+.+++....  +...... .++..  .++++++.||.+      ..+..||..+.+-
T Consensus       342 ~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~lp~~r~~-~~~~~--~~~~iYv~GG~~~~~~~~~~v~~yd~~t~~W  418 (534)
T PHA03098        342 NNRIYVIGGIYNSISLNTVESWKPGESKWREEPPLIFPRYN-PCVVN--VNNLIYVIGGISKNDELLKTVECFSLNTNKW  418 (534)
T ss_pred             CCEEEEEeCCCCCEecceEEEEcCCCCceeeCCCcCcCCcc-ceEEE--ECCEEEEECCcCCCCcccceEEEEeCCCCee
Confidence            46667777755     2477888877654321  1111111 11121  245677777632      3578888875432


Q ss_pred             EE--EeecccccEEEEEEcCCCCeEEEEeCCC--------cEEEEecCccc--eehcccccccceEEEEEeeCCCEEEEE
Q 021247          236 VT--AMSGHASWVLSVDASPDGAAITTGSSDR--------TVKLWDLNMRA--AMQSMTNHTDQVWGVSFRPLGGRVVSV  303 (315)
Q Consensus       236 ~~--~~~~~~~~i~~~~~~~~~~~l~s~~~d~--------~i~iwd~~~~~--~~~~~~~~~~~v~~~~~s~~~~~l~s~  303 (315)
                      ..  .+....... + +...++.+.+.||.+.        .+.+||..+.+  .+..+.........+.  .+++.++.|
T Consensus       419 ~~~~~~p~~r~~~-~-~~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~r~~~~~~~--~~~~iyv~G  494 (534)
T PHA03098        419 SKGSPLPISHYGG-C-AIYHDGKIYVIGGISYIDNIKVYNIVESYNPVTNKWTELSSLNFPRINASLCI--FNNKIYVVG  494 (534)
T ss_pred             eecCCCCccccCc-e-EEEECCEEEEECCccCCCCCcccceEEEecCCCCceeeCCCCCcccccceEEE--ECCEEEEEc
Confidence            11  111000001 1 1223556667776532        37788876532  2222221111112222  256666667


Q ss_pred             eCC-----CcEEEeec
Q 021247          304 SDD-----KSISLYEY  314 (315)
Q Consensus       304 ~~d-----~~i~i~~~  314 (315)
                      |.+     ..|.+||.
T Consensus       495 G~~~~~~~~~v~~yd~  510 (534)
T PHA03098        495 GDKYEYYINEIEVYDD  510 (534)
T ss_pred             CCcCCcccceeEEEeC
Confidence            654     36777764

>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2

Probab=96.50  E-value=0.33  Score=38.99  Aligned_cols=181  Identities=14%  Similarity=0.143  Sum_probs=112.9

Q ss_pred             ceEEEEeCCCCCEEEEeeCCC--eEEEEECCCCceeEEeeCCcc-cEEEEEECCCCCeEEEEecCCCeEEEEecCCccee
Q 021247           62 GVVSVAAHPSGIIAASASLDS--FVRVFDVDTNASIATLEASPS-EVWQMQFDPKGTTLAVAGGGSASVKLWDTATWNLI  138 (315)
Q Consensus        62 ~v~~~~~~~~g~~l~s~~~d~--~i~~w~~~~~~~~~~~~~~~~-~v~~~~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~  138 (315)
                      ....+.+..+|.++-+.+.-|  .|+.+|+.+++.......... --..+...  +..+..-.-.++...+||..+.+.+
T Consensus        46 FTQGL~~~~~g~LyESTG~yG~S~l~~~d~~tg~~~~~~~l~~~~FgEGit~~--~d~l~qLTWk~~~~f~yd~~tl~~~  123 (264)
T PF05096_consen   46 FTQGLEFLDDGTLYESTGLYGQSSLRKVDLETGKVLQSVPLPPRYFGEGITIL--GDKLYQLTWKEGTGFVYDPNTLKKI  123 (264)
T ss_dssp             EEEEEEEEETTEEEEEECSTTEEEEEEEETTTSSEEEEEE-TTT--EEEEEEE--TTEEEEEESSSSEEEEEETTTTEEE
T ss_pred             cCccEEecCCCEEEEeCCCCCcEEEEEEECCCCcEEEEEECCccccceeEEEE--CCEEEEEEecCCeEEEEccccceEE
Confidence            355677777888888887776  699999999987665543321 12233333  2234444567889999999999888


Q ss_pred             eeecCCCCCCCCCCccCCCCcceEEEEECCCCCEEEEecCCCcEEEEEcccceeeeeecC--Ccc---ceEEEEEcCCCC
Q 021247          139 ATLSIPRPEGLKPTDKSSSKKFVLSVAWSPDGRRIACGSMDGTISVFDVTRAKFLHHLEG--HFM---PVRSLVYSPVDP  213 (315)
Q Consensus       139 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~s~dg~i~i~d~~~~~~~~~~~~--~~~---~v~~~~~~~~~~  213 (315)
                      .++..+..              -..++  .+++.|+.+.....++++|..+.+....+.-  ...   .++.+.+-  ++
T Consensus       124 ~~~~y~~E--------------GWGLt--~dg~~Li~SDGS~~L~~~dP~~f~~~~~i~V~~~g~pv~~LNELE~i--~G  185 (264)
T PF05096_consen  124 GTFPYPGE--------------GWGLT--SDGKRLIMSDGSSRLYFLDPETFKEVRTIQVTDNGRPVSNLNELEYI--NG  185 (264)
T ss_dssp             EEEE-SSS----------------EEE--ECSSCEEEE-SSSEEEEE-TTT-SEEEEEE-EETTEE---EEEEEEE--TT
T ss_pred             EEEecCCc--------------ceEEE--cCCCEEEEECCccceEEECCcccceEEEEEEEECCEECCCcEeEEEE--cC
Confidence            88866421              13455  4567777666677899999887766555432  222   33455554  56


Q ss_pred             cEEEEEeCCCeEEEEeCCCCeeEEEeec------------c---cccEEEEEEcCCCCeEEEEe
Q 021247          214 RVLFSASDDTHVHMYDAEGKSLVTAMSG------------H---ASWVLSVDASPDGAAITTGS  262 (315)
Q Consensus       214 ~~l~s~~~d~~i~~wd~~~~~~~~~~~~------------~---~~~i~~~~~~~~~~~l~s~~  262 (315)
                      .+.+-.-....|...|..++.++..+.-            +   ..-.+.++++|....|...|
T Consensus       186 ~IyANVW~td~I~~Idp~tG~V~~~iDls~L~~~~~~~~~~~~~~dVLNGIAyd~~~~~l~vTG  249 (264)
T PF05096_consen  186 KIYANVWQTDRIVRIDPETGKVVGWIDLSGLRPEVGRDKSRQPDDDVLNGIAYDPETDRLFVTG  249 (264)
T ss_dssp             EEEEEETTSSEEEEEETTT-BEEEEEE-HHHHHHHTSTTST--TTS-EEEEEEETTTTEEEEEE
T ss_pred             EEEEEeCCCCeEEEEeCCCCeEEEEEEhhHhhhcccccccccccCCeeEeEeEeCCCCEEEEEe
Confidence            6666666677888899999988775531            1   24478999998765544444

3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.

>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2

Probab=96.48  E-value=0.34  Score=38.95  Aligned_cols=176  Identities=14%  Similarity=0.157  Sum_probs=107.2

Q ss_pred             EEEEeeCCC--cEEEEcCCCCcceeeccc-cccceEEEEeCCCCCEEEEeeCCCeEEEEECCCCceeEEeeCCcccEEEE
Q 021247           32 LLLTGSLDE--TVKLWRPDDMQLERTNTG-HCLGVVSVAAHPSGIIAASASLDSFVRVFDVDTNASIATLEASPSEVWQM  108 (315)
Q Consensus        32 ~l~sgs~d~--~v~~w~~~~~~~~~~~~~-h~~~v~~~~~~~~g~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~v~~~  108 (315)
                      ++-+.+.-|  .|+.+|+.+++..+...- ...---.+... .+.+..-.-.++...+||.++.+.+.++.. +.+-|.+
T Consensus        58 LyESTG~yG~S~l~~~d~~tg~~~~~~~l~~~~FgEGit~~-~d~l~qLTWk~~~~f~yd~~tl~~~~~~~y-~~EGWGL  135 (264)
T PF05096_consen   58 LYESTGLYGQSSLRKVDLETGKVLQSVPLPPRYFGEGITIL-GDKLYQLTWKEGTGFVYDPNTLKKIGTFPY-PGEGWGL  135 (264)
T ss_dssp             EEEEECSTTEEEEEEEETTTSSEEEEEE-TTT--EEEEEEE-TTEEEEEESSSSEEEEEETTTTEEEEEEE--SSS--EE
T ss_pred             EEEeCCCCCcEEEEEEECCCCcEEEEEECCccccceeEEEE-CCEEEEEEecCCeEEEEccccceEEEEEec-CCcceEE
Confidence            556666555  688899988876543211 11111122222 234444567788999999999888887764 4678888


Q ss_pred             EECCCCCeEEEEecCCCeEEEEecCCcceeeeecCCCCCCCCCCccCCCCcceEEEEECCCCCEEEEecCCCcEEEEEcc
Q 021247          109 QFDPKGTTLAVAGGGSASVKLWDTATWNLIATLSIPRPEGLKPTDKSSSKKFVLSVAWSPDGRRIACGSMDGTISVFDVT  188 (315)
Q Consensus       109 ~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~s~dg~i~i~d~~  188 (315)
                      +.  ++..++. +.+...+..+|..+.+....+.+....        ..-..++.+.|- +|...|-.-....|...|..
T Consensus       136 t~--dg~~Li~-SDGS~~L~~~dP~~f~~~~~i~V~~~g--------~pv~~LNELE~i-~G~IyANVW~td~I~~Idp~  203 (264)
T PF05096_consen  136 TS--DGKRLIM-SDGSSRLYFLDPETFKEVRTIQVTDNG--------RPVSNLNELEYI-NGKIYANVWQTDRIVRIDPE  203 (264)
T ss_dssp             EE--CSSCEEE-E-SSSEEEEE-TTT-SEEEEEE-EETT--------EE---EEEEEEE-TTEEEEEETTSSEEEEEETT
T ss_pred             Ec--CCCEEEE-ECCccceEEECCcccceEEEEEEEECC--------EECCCcEeEEEE-cCEEEEEeCCCCeEEEEeCC
Confidence            85  3455554 455679999999888877776553211        112236667775 57666767777788899999


Q ss_pred             cceeeeeec-----------C-C---ccceEEEEEcCCCCcEEEEEeC
Q 021247          189 RAKFLHHLE-----------G-H---FMPVRSLVYSPVDPRVLFSASD  221 (315)
Q Consensus       189 ~~~~~~~~~-----------~-~---~~~v~~~~~~~~~~~~l~s~~~  221 (315)
                      +|+....+.           . +   ....+.|++.|..++++++|=.
T Consensus       204 tG~V~~~iDls~L~~~~~~~~~~~~~~dVLNGIAyd~~~~~l~vTGK~  251 (264)
T PF05096_consen  204 TGKVVGWIDLSGLRPEVGRDKSRQPDDDVLNGIAYDPETDRLFVTGKL  251 (264)
T ss_dssp             T-BEEEEEE-HHHHHHHTSTTST--TTS-EEEEEEETTTTEEEEEETT
T ss_pred             CCeEEEEEEhhHhhhcccccccccccCCeeEeEeEeCCCCEEEEEeCC
Confidence            988765441           0 1   2456899999988888888743

3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.

>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]

Probab=96.28  E-value=0.18  Score=43.90  Aligned_cols=138  Identities=14%  Similarity=0.161  Sum_probs=87.1

Q ss_pred             ECCCCCEEE-EecCCCcEEEEEcccceeeeeecCCccceEEEEEcCCC------CcEEEEEeCCCeEEEEeCCCCeeEEE
Q 021247          166 WSPDGRRIA-CGSMDGTISVFDVTRAKFLHHLEGHFMPVRSLVYSPVD------PRVLFSASDDTHVHMYDAEGKSLVTA  238 (315)
Q Consensus       166 ~~~~~~~l~-~~s~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~------~~~l~s~~~d~~i~~wd~~~~~~~~~  238 (315)
                      ...+..+++ .|.....++-.|++.|+.+..+..|...  -+.|.|..      +..-+.|-.+..|.-.|.+-.-..-.
T Consensus       475 h~~dssli~~dg~~~~kLykmDIErGkvveeW~~~ddv--vVqy~p~~kf~qmt~eqtlvGlS~~svFrIDPR~~gNKi~  552 (776)
T COG5167         475 HDNDSSLIYLDGGERDKLYKMDIERGKVVEEWDLKDDV--VVQYNPYFKFQQMTDEQTLVGLSDYSVFRIDPRARGNKIK  552 (776)
T ss_pred             ecCCcceEEecCCCcccceeeecccceeeeEeecCCcc--eeecCCchhHHhcCccceEEeecccceEEecccccCCcee
Confidence            344555554 5667778999999999999998877654  45566632      12234455566666667653211111


Q ss_pred             eecccccEEEEEEcC----CCCeEEEEeCCCcEEEEecCccceehcccccccceEEEEEeeCCCEEEEEeC
Q 021247          239 MSGHASWVLSVDASP----DGAAITTGSSDRTVKLWDLNMRAAMQSMTNHTDQVWGVSFRPLGGRVVSVSD  305 (315)
Q Consensus       239 ~~~~~~~i~~~~~~~----~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~  305 (315)
                      ........+.-.|+.    ...++|.|+..|.|++||.-..+....+++-.+.|..+..+.+|.+|++.+.
T Consensus       553 v~esKdY~tKn~Fss~~tTesGyIa~as~kGDirLyDRig~rAKtalP~lG~aIk~idvta~Gk~ilaTCk  623 (776)
T COG5167         553 VVESKDYKTKNKFSSGMTTESGYIAAASRKGDIRLYDRIGKRAKTALPGLGDAIKHIDVTANGKHILATCK  623 (776)
T ss_pred             eeeehhccccccccccccccCceEEEecCCCceeeehhhcchhhhcCcccccceeeeEeecCCcEEEEeec
Confidence            111122222223333    3458999999999999986433333345677789999999999999887765

>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain

Probab=96.17  E-value=0.025  Score=32.15  Aligned_cols=31  Identities=29%  Similarity=0.361  Sum_probs=28.1

Q ss_pred             cccEEEEEEcCCCCeEEEEeCCCcEEEEecC
Q 021247          243 ASWVLSVDASPDGAAITTGSSDRTVKLWDLN  273 (315)
Q Consensus       243 ~~~i~~~~~~~~~~~l~s~~~d~~i~iwd~~  273 (315)
                      ...|..++|+|...++|.+..+|.|.++.++
T Consensus        11 ~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl~   41 (47)
T PF12894_consen   11 PSRVSCMSWCPTMDLIALGTEDGEVLVYRLN   41 (47)
T ss_pred             CCcEEEEEECCCCCEEEEEECCCeEEEEECC
Confidence            4558899999999999999999999999984

>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=95.88  E-value=0.63  Score=36.45  Aligned_cols=141  Identities=11%  Similarity=0.089  Sum_probs=86.4

Q ss_pred             cceEEEEeCCCCCEEEEeeCC---------CeEEEEECCCCceeEEeeCCcccEEEEEECCCCCeEEEEecCCCeEEEEe
Q 021247           61 LGVVSVAAHPSGIIAASASLD---------SFVRVFDVDTNASIATLEASPSEVWQMQFDPKGTTLAVAGGGSASVKLWD  131 (315)
Q Consensus        61 ~~v~~~~~~~~g~~l~s~~~d---------~~i~~w~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~~d  131 (315)
                      ...+.-..+|+|++++-.=.|         |.++.|-..-  .+..+...-.--..++|+.+.+.+.+.-+.+-+|.-||
T Consensus       109 nR~NDgkvdP~Gryy~GtMad~~~~le~~~g~Ly~~~~~h--~v~~i~~~v~IsNgl~Wd~d~K~fY~iDsln~~V~a~d  186 (310)
T KOG4499|consen  109 NRLNDGKVDPDGRYYGGTMADFGDDLEPIGGELYSWLAGH--QVELIWNCVGISNGLAWDSDAKKFYYIDSLNYEVDAYD  186 (310)
T ss_pred             cccccCccCCCCceeeeeeccccccccccccEEEEeccCC--CceeeehhccCCccccccccCcEEEEEccCceEEeeee
Confidence            345566788999886522111         2344443321  11222222223356788877777777777777887777


Q ss_pred             --cCCccee---eeecCCCCCCCCCCccCCCCcceEEEEECCCCCEEEEecCCCcEEEEEcccceeeeeecCCccceEEE
Q 021247          132 --TATWNLI---ATLSIPRPEGLKPTDKSSSKKFVLSVAWSPDGRRIACGSMDGTISVFDVTRAKFLHHLEGHFMPVRSL  206 (315)
Q Consensus       132 --~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~s~dg~i~i~d~~~~~~~~~~~~~~~~v~~~  206 (315)
                        ..++...   ..+.+.......       ....-.++...+|++.+++-+.++|...|+.+++.+..+.-....|+++
T Consensus       187 yd~~tG~~snr~~i~dlrk~~~~e-------~~~PDGm~ID~eG~L~Va~~ng~~V~~~dp~tGK~L~eiklPt~qitsc  259 (310)
T KOG4499|consen  187 YDCPTGDLSNRKVIFDLRKSQPFE-------SLEPDGMTIDTEGNLYVATFNGGTVQKVDPTTGKILLEIKLPTPQITSC  259 (310)
T ss_pred             cCCCcccccCcceeEEeccCCCcC-------CCCCCcceEccCCcEEEEEecCcEEEEECCCCCcEEEEEEcCCCceEEE
Confidence              5554332   112222111110       0112356667789999999999999999999999999988888889999


Q ss_pred             EEcC
Q 021247          207 VYSP  210 (315)
Q Consensus       207 ~~~~  210 (315)
                      +|.-
T Consensus       260 cFgG  263 (310)
T KOG4499|consen  260 CFGG  263 (310)
T ss_pred             EecC
Confidence            9964

>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex

Probab=95.80  E-value=1.2  Score=38.96  Aligned_cols=200  Identities=13%  Similarity=0.102  Sum_probs=94.6

Q ss_pred             cEEEEcCCCCcceeeccccccceEEEEeCCCCCEEEEeeCCCeEEEEECCCCceeEEeeC----CcccEEEE-----EEC
Q 021247           41 TVKLWRPDDMQLERTNTGHCLGVVSVAAHPSGIIAASASLDSFVRVFDVDTNASIATLEA----SPSEVWQM-----QFD  111 (315)
Q Consensus        41 ~v~~w~~~~~~~~~~~~~h~~~v~~~~~~~~g~~l~s~~~d~~i~~w~~~~~~~~~~~~~----~~~~v~~~-----~~~  111 (315)
                      .|++|+.....+....-.+ +.+..+.|+.+. .|+....||.++++|+....   .+..    ....|...     .+.
T Consensus        62 ~I~iys~sG~ll~~i~w~~-~~iv~~~wt~~e-~LvvV~~dG~v~vy~~~G~~---~fsl~~~i~~~~v~e~~i~~~~~~  136 (410)
T PF04841_consen   62 SIQIYSSSGKLLSSIPWDS-GRIVGMGWTDDE-ELVVVQSDGTVRVYDLFGEF---QFSLGEEIEEEKVLECRIFAIWFY  136 (410)
T ss_pred             EEEEECCCCCEeEEEEECC-CCEEEEEECCCC-eEEEEEcCCEEEEEeCCCce---eechhhhccccCcccccccccccC
Confidence            4777776544433322122 688999998865 45567789999999986443   1111    11112111     222


Q ss_pred             CCCCeEEEEecCCCeEEEEecCCcceeeeecCCCCCCCCCCccCCCCcceEEEEECCCCCEEEEecCCCcEEEEEcccce
Q 021247          112 PKGTTLAVAGGGSASVKLWDTATWNLIATLSIPRPEGLKPTDKSSSKKFVLSVAWSPDGRRIACGSMDGTISVFDVTRAK  191 (315)
Q Consensus       112 ~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~s~dg~i~i~d~~~~~  191 (315)
                      .+| .++++  .++.+.+..-........ ..+........ ............++.+....+....++.+.+.+-...+
T Consensus       137 ~~G-ivvLt--~~~~~~~v~n~~~~~~~~-~~~~~p~~~~~-~~~~~~~~~i~~l~~~~~~~i~~~~g~~i~~i~~~~~~  211 (410)
T PF04841_consen  137 KNG-IVVLT--GNNRFYVVNNIDEPVKLR-RLPEIPGLWTK-FHWWPSWTVIPLLSSDRVVEILLANGETIYIIDENSFK  211 (410)
T ss_pred             CCC-EEEEC--CCCeEEEEeCccccchhh-ccccCCCcccc-cccccccccceEeecCcceEEEEecCCEEEEEEccccc
Confidence            222 22232  334443332221110100 00000000000 00000000012334444444444455566644432211


Q ss_pred             eeeeecCCccceEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCeeEEEeecc-cccEEEEEEcCCC
Q 021247          192 FLHHLEGHFMPVRSLVYSPVDPRVLFSASDDTHVHMYDAEGKSLVTAMSGH-ASWVLSVDASPDG  255 (315)
Q Consensus       192 ~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~-~~~i~~~~~~~~~  255 (315)
                      .   +. ..+++..++.|| ++++++.-..+|.+.+....-.+....+... ...+..+.|..+.
T Consensus       212 ~---i~-~~~~i~~iavSp-ng~~iAl~t~~g~l~v~ssDf~~~~~e~~~~~~~~p~~~~WCG~d  271 (410)
T PF04841_consen  212 Q---ID-SDGPIIKIAVSP-NGKFIALFTDSGNLWVVSSDFSEKLCEFDTDSKSPPKQMAWCGND  271 (410)
T ss_pred             c---cc-CCCCeEEEEECC-CCCEEEEEECCCCEEEEECcccceeEEeecCcCCCCcEEEEECCC
Confidence            1   11 235799999999 6678888888899988876544444444322 2344566665543

Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm

>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=95.78  E-value=0.84  Score=37.07  Aligned_cols=145  Identities=12%  Similarity=0.233  Sum_probs=88.9

Q ss_pred             eEEEEECCCCCEEEEecCCCcEEEEEcccceeeeeecCC-ccceEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCeeE---
Q 021247          161 VLSVAWSPDGRRIACGSMDGTISVFDVTRAKFLHHLEGH-FMPVRSLVYSPVDPRVLFSASDDTHVHMYDAEGKSLV---  236 (315)
Q Consensus       161 i~~~~~~~~~~~l~~~s~dg~i~i~d~~~~~~~~~~~~~-~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~---  236 (315)
                      +.++.|+|+.+.|++..+...-.++=-..|+.+..+.-. ....-.+.+.. ++++.++-=.++.+.++.......+   
T Consensus        88 vS~LTynp~~rtLFav~n~p~~iVElt~~GdlirtiPL~g~~DpE~Ieyig-~n~fvi~dER~~~l~~~~vd~~t~~~~~  166 (316)
T COG3204          88 VSSLTYNPDTRTLFAVTNKPAAIVELTKEGDLIRTIPLTGFSDPETIEYIG-GNQFVIVDERDRALYLFTVDADTTVISA  166 (316)
T ss_pred             ccceeeCCCcceEEEecCCCceEEEEecCCceEEEecccccCChhHeEEec-CCEEEEEehhcceEEEEEEcCCccEEec
Confidence            889999999999888777776666644567776665321 11123344443 4555556566777877765433111   


Q ss_pred             ----EEe--ecc-cccEEEEEEcCCCCeEEEEeCCCcEEEEecCccce---ehcccccc-------cceEEEEEeeCCCE
Q 021247          237 ----TAM--SGH-ASWVLSVDASPDGAAITTGSSDRTVKLWDLNMRAA---MQSMTNHT-------DQVWGVSFRPLGGR  299 (315)
Q Consensus       237 ----~~~--~~~-~~~i~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~---~~~~~~~~-------~~v~~~~~s~~~~~  299 (315)
                          -.+  ..+ +...-.++|+|..+.|..+-.-.-+.||.......   .+....++       ..+.++.|.+..+.
T Consensus       167 ~~~~i~L~~~~k~N~GfEGlA~d~~~~~l~~aKEr~P~~I~~~~~~~~~l~~~~~~~~~~~~~~f~~DvSgl~~~~~~~~  246 (316)
T COG3204         167 KVQKIPLGTTNKKNKGFEGLAWDPVDHRLFVAKERNPIGIFEVTQSPSSLSVHASLDPTADRDLFVLDVSGLEFNAITNS  246 (316)
T ss_pred             cceEEeccccCCCCcCceeeecCCCCceEEEEEccCCcEEEEEecCCcccccccccCcccccceEeeccccceecCCCCc
Confidence                111  122 56678899999988888888888888887764331   11112222       24667788876555


Q ss_pred             EEEEeCC
Q 021247          300 VVSVSDD  306 (315)
Q Consensus       300 l~s~~~d  306 (315)
                      |+..|++
T Consensus       247 LLVLS~E  253 (316)
T COG3204         247 LLVLSDE  253 (316)
T ss_pred             EEEEecC
Confidence            5554443

>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain

Probab=95.76  E-value=0.7  Score=39.76  Aligned_cols=140  Identities=16%  Similarity=0.249  Sum_probs=75.7

Q ss_pred             eEEEEECCCCCEEEEec-----------CCC-cEEEEEccc--cee--eeeecCCccceEEEEEcCCCCcEEEEEeCCCe
Q 021247          161 VLSVAWSPDGRRIACGS-----------MDG-TISVFDVTR--AKF--LHHLEGHFMPVRSLVYSPVDPRVLFSASDDTH  224 (315)
Q Consensus       161 i~~~~~~~~~~~l~~~s-----------~dg-~i~i~d~~~--~~~--~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~  224 (315)
                      ...|+|.++|+.+++-.           ..+ .|.+++-..  ++.  ...+.........+++.+ ++ ++++ ... .
T Consensus        16 P~~ia~d~~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa~~l~~p~Gi~~~~-~G-lyV~-~~~-~   91 (367)
T TIGR02604        16 PIAVCFDERGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVFAEELSMVTGLAVAV-GG-VYVA-TPP-D   91 (367)
T ss_pred             CceeeECCCCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEeecCCCCccceeEec-CC-EEEe-CCC-e
Confidence            46899999999877753           223 677776432  222  122222233457788876 44 5554 333 3


Q ss_pred             EEEE-eCCC-------Ce-eEEEeec----ccccEEEEEEcCCCCeEEEEeCC-------------------CcEEEEec
Q 021247          225 VHMY-DAEG-------KS-LVTAMSG----HASWVLSVDASPDGAAITTGSSD-------------------RTVKLWDL  272 (315)
Q Consensus       225 i~~w-d~~~-------~~-~~~~~~~----~~~~i~~~~~~~~~~~l~s~~~d-------------------~~i~iwd~  272 (315)
                      |..| |...       .+ ++..+..    +......+.+.|+|.+.++-+..                   +.|.-++.
T Consensus        92 i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG~LYv~~G~~~~~~~~~~~~~~~~~~~~~g~i~r~~p  171 (367)
T TIGR02604        92 ILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDGWLYFNHGNTLASKVTRPGTSDESRQGLGGGLFRYNP  171 (367)
T ss_pred             EEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCCCEEEecccCCCceeccCCCccCcccccCceEEEEec
Confidence            5444 4432       11 2222222    12346789999999876655521                   33444444


Q ss_pred             CccceehcccccccceEEEEEeeCCCEEEEEeC
Q 021247          273 NMRAAMQSMTNHTDQVWGVSFRPLGGRVVSVSD  305 (315)
Q Consensus       273 ~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~  305 (315)
                      ..++ ++.+..--...+.++|+|+|..+++-..
T Consensus       172 dg~~-~e~~a~G~rnp~Gl~~d~~G~l~~tdn~  203 (367)
T TIGR02604       172 DGGK-LRVVAHGFQNPYGHSVDSWGDVFFCDND  203 (367)
T ss_pred             CCCe-EEEEecCcCCCccceECCCCCEEEEccC
Confidence            4332 2233222345678999999987766443

All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.

>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins

Probab=95.66  E-value=0.083  Score=29.15  Aligned_cols=32  Identities=28%  Similarity=0.342  Sum_probs=26.7

Q ss_pred             cceEEEEEcCCCC--cEEEEEeCCCeEEEEeCCC
Q 021247          201 MPVRSLVYSPVDP--RVLFSASDDTHVHMYDAEG  232 (315)
Q Consensus       201 ~~v~~~~~~~~~~--~~l~s~~~d~~i~~wd~~~  232 (315)
                      +.+++++|+|...  .+|+-+-.-+.+.++|+++
T Consensus         1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~   34 (43)
T PF10313_consen    1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRS   34 (43)
T ss_pred             CCeEEEEeCCCCCcccEEEEEccCCeEEEEEccc
Confidence            3689999998655  6888888889999999985

It contains a characteristic DLL sequence motif.

>PHA02790 Kelch-like protein; Provisional

Probab=95.65  E-value=1.5  Score=39.20  Aligned_cols=177  Identities=7%  Similarity=0.016  Sum_probs=83.0

Q ss_pred             CeEEEEecCC-----CeEEEEecCCcceeeeecCCCCCCCCCCccCCCCcceEEEEECCCCCEEEEecCC--CcEEEEEc
Q 021247          115 TTLAVAGGGS-----ASVKLWDTATWNLIATLSIPRPEGLKPTDKSSSKKFVLSVAWSPDGRRIACGSMD--GTISVFDV  187 (315)
Q Consensus       115 ~~~~~~~~~d-----~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~s~d--g~i~i~d~  187 (315)
                      +.+++.||.+     .++..||.++.+....-..+.+           ......+.  -++...+.|+.+  ..+..||.
T Consensus       272 ~~lyviGG~~~~~~~~~v~~Ydp~~~~W~~~~~m~~~-----------r~~~~~v~--~~~~iYviGG~~~~~sve~ydp  338 (480)
T PHA02790        272 EVVYLIGGWMNNEIHNNAIAVNYISNNWIPIPPMNSP-----------RLYASGVP--ANNKLYVVGGLPNPTSVERWFH  338 (480)
T ss_pred             CEEEEEcCCCCCCcCCeEEEEECCCCEEEECCCCCch-----------hhcceEEE--ECCEEEEECCcCCCCceEEEEC
Confidence            4566666643     3566788776544332211111           00111222  356666777753  35888888


Q ss_pred             ccceeeee--ecCCccceEEEEEcCCCCcEEEEEeCCC---eEEEEeCCCCeeEE--EeecccccEEEEEEcCCCCeEEE
Q 021247          188 TRAKFLHH--LEGHFMPVRSLVYSPVDPRVLFSASDDT---HVHMYDAEGKSLVT--AMSGHASWVLSVDASPDGAAITT  260 (315)
Q Consensus       188 ~~~~~~~~--~~~~~~~v~~~~~~~~~~~~l~s~~~d~---~i~~wd~~~~~~~~--~~~~~~~~i~~~~~~~~~~~l~s  260 (315)
                      .+++....  +....... ++..  .++++.+.||.++   .+..||.++.+-..  .+....... ++ ..-++++.+.
T Consensus       339 ~~n~W~~~~~l~~~r~~~-~~~~--~~g~IYviGG~~~~~~~ve~ydp~~~~W~~~~~m~~~r~~~-~~-~~~~~~IYv~  413 (480)
T PHA02790        339 GDAAWVNMPSLLKPRCNP-AVAS--INNVIYVIGGHSETDTTTEYLLPNHDQWQFGPSTYYPHYKS-CA-LVFGRRLFLV  413 (480)
T ss_pred             CCCeEEECCCCCCCCccc-EEEE--ECCEEEEecCcCCCCccEEEEeCCCCEEEeCCCCCCccccc-eE-EEECCEEEEE
Confidence            76654322  21111111 1111  2567777777543   46678876543221  111000111 11 2235666666


Q ss_pred             EeCCCcEEEEecCcc--ceehcccccccceEEEEEeeCCCEEEEEeCC-----CcEEEeec
Q 021247          261 GSSDRTVKLWDLNMR--AAMQSMTNHTDQVWGVSFRPLGGRVVSVSDD-----KSISLYEY  314 (315)
Q Consensus       261 ~~~d~~i~iwd~~~~--~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d-----~~i~i~~~  314 (315)
                      |+   .+.+||..+.  ..+..+.........+.  .+|+..+.||.+     .++..||.
T Consensus       414 GG---~~e~ydp~~~~W~~~~~m~~~r~~~~~~v--~~~~IYviGG~~~~~~~~~ve~Yd~  469 (480)
T PHA02790        414 GR---NAEFYCESSNTWTLIDDPIYPRDNPELII--VDNKLLLIGGFYRGSYIDTIEVYNN  469 (480)
T ss_pred             CC---ceEEecCCCCcEeEcCCCCCCccccEEEE--ECCEEEEECCcCCCcccceEEEEEC
Confidence            64   4677877543  23333322222222222  355566777754     35667764

>PF15390 DUF4613: Domain of unknown function (DUF4613)

Probab=95.58  E-value=0.33  Score=43.16  Aligned_cols=121  Identities=20%  Similarity=0.282  Sum_probs=76.0

Q ss_pred             ccceEEEEEeecCCCCCcEEEEeeCCCcEEEEcCC-----CCcceeeccccc---cc--eEEEEeCCCCCEEEEeeCCCe
Q 021247           14 EESVWAVTWVPATETRPALLLTGSLDETVKLWRPD-----DMQLERTNTGHC---LG--VVSVAAHPSGIIAASASLDSF   83 (315)
Q Consensus        14 ~~~v~~v~~~~~~~~~~~~l~sgs~d~~v~~w~~~-----~~~~~~~~~~h~---~~--v~~~~~~~~g~~l~s~~~d~~   83 (315)
                      =+.|.++.|.|.......-+++-..-..|.+|...     ..+.......+-   .+  ...+-|||...+|+.-..+..
T Consensus        56 FEhV~GlsW~P~~~~~~paLLAVQHkkhVtVWqL~~s~~e~~K~l~sQtcEi~e~~pvLpQGCVWHPk~~iL~VLT~~dv  135 (671)
T PF15390_consen   56 FEHVHGLSWAPPCTADTPALLAVQHKKHVTVWQLCPSTTERNKLLMSQTCEIREPFPVLPQGCVWHPKKAILTVLTARDV  135 (671)
T ss_pred             cceeeeeeecCcccCCCCceEEEeccceEEEEEeccCccccccceeeeeeeccCCcccCCCcccccCCCceEEEEecCce
Confidence            35799999999765444345555677899999753     222222111111   11  234668998877765554444


Q ss_pred             EEEEECCCCceeEEee-CCcccEEEEEECCCCCeEEEEecCCCeEEEEecCC
Q 021247           84 VRVFDVDTNASIATLE-ASPSEVWQMQFDPKGTTLAVAGGGSASVKLWDTAT  134 (315)
Q Consensus        84 i~~w~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~~d~~~  134 (315)
                      --+.++.........+ ...+.|.+.+|.++|+.++++-+..-.-++||-..
T Consensus       136 SV~~sV~~d~srVkaDi~~~G~IhCACWT~DG~RLVVAvGSsLHSyiWd~~q  187 (671)
T PF15390_consen  136 SVLPSVHCDSSRVKADIKTSGLIHCACWTKDGQRLVVAVGSSLHSYIWDSAQ  187 (671)
T ss_pred             eEeeeeeeCCceEEEeccCCceEEEEEecCcCCEEEEEeCCeEEEEEecCch
Confidence            4455555443322221 34567999999999999988877777889998754

>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=95.51  E-value=0.11  Score=49.40  Aligned_cols=144  Identities=13%  Similarity=0.075  Sum_probs=88.5

Q ss_pred             eEEEEECCCCCEEEE--ecCCCcEEEEEcccceeee-----eecCC------ccceEEEEEcCCCCcEEEEEeCCCeEEE
Q 021247          161 VLSVAWSPDGRRIAC--GSMDGTISVFDVTRAKFLH-----HLEGH------FMPVRSLVYSPVDPRVLFSASDDTHVHM  227 (315)
Q Consensus       161 i~~~~~~~~~~~l~~--~s~dg~i~i~d~~~~~~~~-----~~~~~------~~~v~~~~~~~~~~~~l~s~~~d~~i~~  227 (315)
                      +..+...+|+...++  .+++-.|..||+++...-.     -+..|      -.-..++.|.|.-+...+....|+.|++
T Consensus       103 i~~~v~~~D~t~s~v~~tsng~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp~n~av~l~dlsl~V  182 (1405)
T KOG3630|consen  103 IVIFVCFHDATDSVVVSTSNGEAVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVPLNSAVDLSDLSLRV  182 (1405)
T ss_pred             ceEEEeccCCceEEEEEecCCceEEEEehHhhhhhhhhhccccccccchhccccccccccccCCccchhhhhccccchhh
Confidence            556666777665544  3344478999986432211     11111      1123567788866666777788998888


Q ss_pred             EeCCCCeeEEEeecccccEEEEEEcCCCCeEEEEeCCCcEEEEecCcc--ceehccccc-ccceEEEEEeeCCCEEEEEe
Q 021247          228 YDAEGKSLVTAMSGHASWVLSVDASPDGAAITTGSSDRTVKLWDLNMR--AAMQSMTNH-TDQVWGVSFRPLGGRVVSVS  304 (315)
Q Consensus       228 wd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~d~~i~iwd~~~~--~~~~~~~~~-~~~v~~~~~s~~~~~l~s~~  304 (315)
                      .-+........--.-....++++|+|.|..++.|-.+|++.-|.....  ..+..-... ...|.+|.|-....+++..+
T Consensus       183 ~~~~~~~~~v~s~p~t~~~Tav~WSprGKQl~iG~nnGt~vQy~P~leik~~ip~Pp~~e~yrvl~v~Wl~t~eflvvy~  262 (1405)
T KOG3630|consen  183 KSTKQLAQNVTSFPVTNSQTAVLWSPRGKQLFIGRNNGTEVQYEPSLEIKSEIPEPPVEENYRVLSVTWLSTQEFLVVYG  262 (1405)
T ss_pred             hhhhhhhhhhcccCcccceeeEEeccccceeeEecCCCeEEEeecccceeecccCCCcCCCcceeEEEEecceeEEEEec
Confidence            765533222111223455789999999999999999999988865422  222222221 25788998887666666543

>PHA02790 Kelch-like protein; Provisional

Probab=95.45  E-value=1.8  Score=38.75  Aligned_cols=179  Identities=11%  Similarity=0.060  Sum_probs=81.3

Q ss_pred             CCCEEEEeeCCC-----eEEEEECCCCceeEEeeCCc--ccEEEEEECCCCCeEEEEecCC--CeEEEEecCCcceeeee
Q 021247           71 SGIIAASASLDS-----FVRVFDVDTNASIATLEASP--SEVWQMQFDPKGTTLAVAGGGS--ASVKLWDTATWNLIATL  141 (315)
Q Consensus        71 ~g~~l~s~~~d~-----~i~~w~~~~~~~~~~~~~~~--~~v~~~~~~~~~~~~~~~~~~d--~~i~~~d~~~~~~~~~~  141 (315)
                      ++.+++.||.++     ++..||..++.....-....  .....+..   ++.+++.||.+  ..+..||..+.+....-
T Consensus       271 ~~~lyviGG~~~~~~~~~v~~Ydp~~~~W~~~~~m~~~r~~~~~v~~---~~~iYviGG~~~~~sve~ydp~~n~W~~~~  347 (480)
T PHA02790        271 GEVVYLIGGWMNNEIHNNAIAVNYISNNWIPIPPMNSPRLYASGVPA---NNKLYVVGGLPNPTSVERWFHGDAAWVNMP  347 (480)
T ss_pred             CCEEEEEcCCCCCCcCCeEEEEECCCCEEEECCCCCchhhcceEEEE---CCEEEEECCcCCCCceEEEECCCCeEEECC
Confidence            456667777543     46677777654322111111  11112222   34566666643  35777887654333211


Q ss_pred             cCCCCCCCCCCccCCCCcceEEEEECCCCCEEEEecCCC---cEEEEEcccceeeee--ecCCccceEEEEEcCCCCcEE
Q 021247          142 SIPRPEGLKPTDKSSSKKFVLSVAWSPDGRRIACGSMDG---TISVFDVTRAKFLHH--LEGHFMPVRSLVYSPVDPRVL  216 (315)
Q Consensus       142 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~s~dg---~i~i~d~~~~~~~~~--~~~~~~~v~~~~~~~~~~~~l  216 (315)
                      .++.+           ......+.  -+|+..+.|+.++   .+..||.++.+....  +.........+.   .++.+.
T Consensus       348 ~l~~~-----------r~~~~~~~--~~g~IYviGG~~~~~~~ve~ydp~~~~W~~~~~m~~~r~~~~~~~---~~~~IY  411 (480)
T PHA02790        348 SLLKP-----------RCNPAVAS--INNVIYVIGGHSETDTTTEYLLPNHDQWQFGPSTYYPHYKSCALV---FGRRLF  411 (480)
T ss_pred             CCCCC-----------CcccEEEE--ECCEEEEecCcCCCCccEEEEeCCCCEEEeCCCCCCccccceEEE---ECCEEE
Confidence            11110           00111222  2566667776543   477899887765432  111111111112   245566


Q ss_pred             EEEeCCCeEEEEeCCCCee--EEEeecccccEEEEEEcCCCCeEEEEeCC-----CcEEEEecC
Q 021247          217 FSASDDTHVHMYDAEGKSL--VTAMSGHASWVLSVDASPDGAAITTGSSD-----RTVKLWDLN  273 (315)
Q Consensus       217 ~s~~~d~~i~~wd~~~~~~--~~~~~~~~~~i~~~~~~~~~~~l~s~~~d-----~~i~iwd~~  273 (315)
                      +.|+   ...+||.++.+-  +..+....... +++ .-++++.+.||.+     ..|..||..
T Consensus       412 v~GG---~~e~ydp~~~~W~~~~~m~~~r~~~-~~~-v~~~~IYviGG~~~~~~~~~ve~Yd~~  470 (480)
T PHA02790        412 LVGR---NAEFYCESSNTWTLIDDPIYPRDNP-ELI-IVDNKLLLIGGFYRGSYIDTIEVYNNR  470 (480)
T ss_pred             EECC---ceEEecCCCCcEeEcCCCCCCcccc-EEE-EECCEEEEECCcCCCcccceEEEEECC
Confidence            6664   466788765432  22221111111 122 2256677777754     234555544

>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation

Probab=95.43  E-value=0.81  Score=37.03  Aligned_cols=107  Identities=18%  Similarity=0.180  Sum_probs=62.7

Q ss_pred             ceEEEEEcCCCCcEEEEE--eCCCeEEEEeCCCCeeEEEeecccccEEEEEEcCCCCeEEEEeCCCcEEEEe-cCccce-
Q 021247          202 PVRSLVYSPVDPRVLFSA--SDDTHVHMYDAEGKSLVTAMSGHASWVLSVDASPDGAAITTGSSDRTVKLWD-LNMRAA-  277 (315)
Q Consensus       202 ~v~~~~~~~~~~~~l~s~--~~d~~i~~wd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~d~~i~iwd-~~~~~~-  277 (315)
                      .+.+.++++++..+.+..  .....++++........ .+.+  ..+..-.|++++...+....+...+++. ...+.. 
T Consensus        25 ~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~~~~~~~~-~~~g--~~l~~PS~d~~g~~W~v~~~~~~~~~~~~~~~g~~~  101 (253)
T PF10647_consen   25 DVTSPAVSPDGSRVAAVSEGDGGRSLYVGPAGGPVRP-VLTG--GSLTRPSWDPDGWVWTVDDGSGGVRVVRDSASGTGE  101 (253)
T ss_pred             cccceEECCCCCeEEEEEEcCCCCEEEEEcCCCccee-eccC--CccccccccCCCCEEEEEcCCCceEEEEecCCCcce
Confidence            567888998655554444  23445666654432221 1122  2567778999987776666677777774 222221 


Q ss_pred             -ehc-ccccccceEEEEEeeCCCEEEEEe---CCCcEEE
Q 021247          278 -MQS-MTNHTDQVWGVSFRPLGGRVVSVS---DDKSISL  311 (315)
Q Consensus       278 -~~~-~~~~~~~v~~~~~s~~~~~l~s~~---~d~~i~i  311 (315)
                       ... ...-...|.++.+||||.+++...   .++.|.|
T Consensus       102 ~~~v~~~~~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~v  140 (253)
T PF10647_consen  102 PVEVDWPGLRGRITALRVSPDGTRVAVVVEDGGGGRVYV  140 (253)
T ss_pred             eEEecccccCCceEEEEECCCCcEEEEEEecCCCCeEEE
Confidence             111 111112899999999999987655   3455544

It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.

>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=95.42  E-value=1.2  Score=36.30  Aligned_cols=171  Identities=15%  Similarity=0.209  Sum_probs=105.5

Q ss_pred             ccccccceEEEEeCCCCCEEEEeeCCCeEEEEECCCCceeEEeeCCc-ccEEEEEECCCCCeEEEEecCCCeEEEEecCC
Q 021247           56 NTGHCLGVVSVAAHPSGIIAASASLDSFVRVFDVDTNASIATLEASP-SEVWQMQFDPKGTTLAVAGGGSASVKLWDTAT  134 (315)
Q Consensus        56 ~~~h~~~v~~~~~~~~g~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~-~~v~~~~~~~~~~~~~~~~~~d~~i~~~d~~~  134 (315)
                      +.|-...+.++.++|+.+.|.+......--|+=-..|+.+.++.... .....+.|.-. +.++++--.++++.++-+..
T Consensus        81 i~g~~~nvS~LTynp~~rtLFav~n~p~~iVElt~~GdlirtiPL~g~~DpE~Ieyig~-n~fvi~dER~~~l~~~~vd~  159 (316)
T COG3204          81 ILGETANVSSLTYNPDTRTLFAVTNKPAAIVELTKEGDLIRTIPLTGFSDPETIEYIGG-NQFVIVDERDRALYLFTVDA  159 (316)
T ss_pred             cccccccccceeeCCCcceEEEecCCCceEEEEecCCceEEEecccccCChhHeEEecC-CEEEEEehhcceEEEEEEcC
Confidence            34555569999999999999988888887787777788777654321 11223444433 34556666677777776554


Q ss_pred             cceeeee---cCCCCCCCCCCccCCCCcceEEEEECCCCCEEEEecCCCcEEEEEccccee---eeeecCC-------cc
Q 021247          135 WNLIATL---SIPRPEGLKPTDKSSSKKFVLSVAWSPDGRRIACGSMDGTISVFDVTRAKF---LHHLEGH-------FM  201 (315)
Q Consensus       135 ~~~~~~~---~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~s~dg~i~i~d~~~~~~---~~~~~~~-------~~  201 (315)
                      .......   .++...      ....+.....++|.|..+.|...-+..-+.||.......   ......+       -.
T Consensus       160 ~t~~~~~~~~~i~L~~------~~k~N~GfEGlA~d~~~~~l~~aKEr~P~~I~~~~~~~~~l~~~~~~~~~~~~~~f~~  233 (316)
T COG3204         160 DTTVISAKVQKIPLGT------TNKKNKGFEGLAWDPVDHRLFVAKERNPIGIFEVTQSPSSLSVHASLDPTADRDLFVL  233 (316)
T ss_pred             CccEEeccceEEeccc------cCCCCcCceeeecCCCCceEEEEEccCCcEEEEEecCCcccccccccCcccccceEee
Confidence            3221111   111110      001133467999999999888887777777776543221   1111111       12


Q ss_pred             ceEEEEEcCCCCcEEEEEeCCCeEEEEeCCCC
Q 021247          202 PVRSLVYSPVDPRVLFSASDDTHVHMYDAEGK  233 (315)
Q Consensus       202 ~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~  233 (315)
                      .+.++.|.+..+.+|+-+..++.+...|..+.
T Consensus       234 DvSgl~~~~~~~~LLVLS~ESr~l~Evd~~G~  265 (316)
T COG3204         234 DVSGLEFNAITNSLLVLSDESRRLLEVDLSGE  265 (316)
T ss_pred             ccccceecCCCCcEEEEecCCceEEEEecCCC
Confidence            35567788877788888888888888887765

>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea

Probab=95.28  E-value=1.8  Score=37.54  Aligned_cols=222  Identities=12%  Similarity=0.116  Sum_probs=97.5

Q ss_pred             CCCEEEEee-CCCeEEEEECCCC----ceeEEeeC---Cc----ccEEEEEECCCCCeEEEEec------CCCeEEEEec
Q 021247           71 SGIIAASAS-LDSFVRVFDVDTN----ASIATLEA---SP----SEVWQMQFDPKGTTLAVAGG------GSASVKLWDT  132 (315)
Q Consensus        71 ~g~~l~s~~-~d~~i~~w~~~~~----~~~~~~~~---~~----~~v~~~~~~~~~~~~~~~~~------~d~~i~~~d~  132 (315)
                      +.++|+..+ ..+.|++.|+.+.    +..++++.   ..    ..--.+..-|+|+.+ +++-      .-|-+.++|-
T Consensus        86 ~Rr~Li~PgL~SsrIyviD~~~dPr~P~l~KvIe~~ev~~k~g~s~PHT~Hclp~G~im-IS~lGd~~G~g~Ggf~llD~  164 (461)
T PF05694_consen   86 ERRYLILPGLRSSRIYVIDTKTDPRKPRLHKVIEPEEVFEKTGLSRPHTVHCLPDGRIM-ISALGDADGNGPGGFVLLDG  164 (461)
T ss_dssp             -S-EEEEEBTTT--EEEEE--S-TTS-EEEEEE-HHHHHHHH-EEEEEEEEE-SS--EE-EEEEEETTS-S--EEEEE-T
T ss_pred             cCCcEEeeeeccCcEEEEECCCCCCCCceEeeeCHHHHHhhcCCCCCceeeecCCccEE-EEeccCCCCCCCCcEEEEcC
Confidence            345666655 6688999999853    23334432   10    111223334666644 4432      2356888888


Q ss_pred             CCcceeeeecCCCCCCCCCCccCCCCcceEEEEECCCCCEEEEec--------------------CCCcEEEEEccccee
Q 021247          133 ATWNLIATLSIPRPEGLKPTDKSSSKKFVLSVAWSPDGRRIACGS--------------------MDGTISVFDVTRAKF  192 (315)
Q Consensus       133 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~s--------------------~dg~i~i~d~~~~~~  192 (315)
                      .+.+....+..++...          .+-..+-|.|..+.++++.                    ...++.+||+.+.+.
T Consensus       165 ~tf~v~g~We~~~~~~----------~~gYDfw~qpr~nvMiSSeWg~P~~~~~Gf~~~d~~~~~yG~~l~vWD~~~r~~  234 (461)
T PF05694_consen  165 ETFEVKGRWEKDRGPQ----------PFGYDFWYQPRHNVMISSEWGAPSMFEKGFNPEDLEAGKYGHSLHVWDWSTRKL  234 (461)
T ss_dssp             TT--EEEE--SB-TT----------------EEEETTTTEEEE-B---HHHHTT---TTTHHHH-S--EEEEEETTTTEE
T ss_pred             ccccccceeccCCCCC----------CCCCCeEEcCCCCEEEEeccCChhhcccCCChhHhhcccccCeEEEEECCCCcE
Confidence            8877777665432211          1123444455444444432                    356799999999999


Q ss_pred             eeeecCCc--cceEEEEEcC--CCCcEEEEEeCCCeEEEEeC-CCCe----eEEEeecc-----------------cccE
Q 021247          193 LHHLEGHF--MPVRSLVYSP--VDPRVLFSASDDTHVHMYDA-EGKS----LVTAMSGH-----------------ASWV  246 (315)
Q Consensus       193 ~~~~~~~~--~~v~~~~~~~--~~~~~l~s~~~d~~i~~wd~-~~~~----~~~~~~~~-----------------~~~i  246 (315)
                      ++.+.-..  ..+..+.|..  ....-++.+....+|..|-. +.++    .+..+...                 ..-|
T Consensus       235 ~Q~idLg~~g~~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~W~a~kVi~ip~~~v~~~~lp~ml~~~~~~P~Li  314 (461)
T PF05694_consen  235 LQTIDLGEEGQMPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGEWAAEKVIDIPAKKVEGWILPEMLKPFGAVPPLI  314 (461)
T ss_dssp             EEEEES-TTEEEEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTEEEEEEEEEE--EE--SS---GGGGGG-EE----
T ss_pred             eeEEecCCCCCceEEEEecCCCCccceEEEEeccceEEEEEEcCCCCeeeeEEEECCCcccCcccccccccccccCCCce
Confidence            88876432  2345667753  33334555555666665543 3332    11111110                 2457


Q ss_pred             EEEEEcCCCCeE-EEEeCCCcEEEEecCcc-c--eehcc--------------cc--cccceEEEEEeeCCCEEEEE
Q 021247          247 LSVDASPDGAAI-TTGSSDRTVKLWDLNMR-A--AMQSM--------------TN--HTDQVWGVSFRPLGGRVVSV  303 (315)
Q Consensus       247 ~~~~~~~~~~~l-~s~~~d~~i~iwd~~~~-~--~~~~~--------------~~--~~~~v~~~~~s~~~~~l~s~  303 (315)
                      +++.+|.|.++| +++-.+|.||.||+..- .  ...++              .+  -.+...-+..|.||++|...
T Consensus       315 tDI~iSlDDrfLYvs~W~~GdvrqYDISDP~~Pkl~gqv~lGG~~~~~~~~~v~g~~l~GgPqMvqlS~DGkRlYvT  391 (461)
T PF05694_consen  315 TDILISLDDRFLYVSNWLHGDVRQYDISDPFNPKLVGQVFLGGSIRKGDHPVVKGKRLRGGPQMVQLSLDGKRLYVT  391 (461)
T ss_dssp             --EEE-TTS-EEEEEETTTTEEEEEE-SSTTS-EEEEEEE-BTTTT-B--TTS------S----EEE-TTSSEEEEE
T ss_pred             EeEEEccCCCEEEEEcccCCcEEEEecCCCCCCcEEeEEEECcEeccCCCccccccccCCCCCeEEEccCCeEEEEE
Confidence            899999999987 55556899999999642 1  11111              00  01234557888899888543

The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.

>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea

Probab=95.26  E-value=1.4  Score=38.08  Aligned_cols=109  Identities=17%  Similarity=0.257  Sum_probs=53.9

Q ss_pred             CCeEEEEECCCCceeEEeeCCcc--cEEEEEE--CCCCCeEEEEecCCCeEEEEec-CCcce--eeeecCCCCC--C-CC
Q 021247           81 DSFVRVFDVDTNASIATLEASPS--EVWQMQF--DPKGTTLAVAGGGSASVKLWDT-ATWNL--IATLSIPRPE--G-LK  150 (315)
Q Consensus        81 d~~i~~w~~~~~~~~~~~~~~~~--~v~~~~~--~~~~~~~~~~~~~d~~i~~~d~-~~~~~--~~~~~~~~~~--~-~~  150 (315)
                      -.++++||+.+.+.++++.....  ....++|  +|...+=++.+.-..+|..|-- ..++.  ...+.++..+  + ..
T Consensus       221 G~~l~vWD~~~r~~~Q~idLg~~g~~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~W~a~kVi~ip~~~v~~~~l  300 (461)
T PF05694_consen  221 GHSLHVWDWSTRKLLQTIDLGEEGQMPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGEWAAEKVIDIPAKKVEGWIL  300 (461)
T ss_dssp             --EEEEEETTTTEEEEEEES-TTEEEEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTEEEEEEEEEE--EE--SS--
T ss_pred             cCeEEEEECCCCcEeeEEecCCCCCceEEEEecCCCCccceEEEEeccceEEEEEEcCCCCeeeeEEEECCCcccCcccc
Confidence            45699999999999999987653  3455665  4555554555444555555432 33332  2223332211  0 00


Q ss_pred             CCcc---CCCCcceEEEEECCCCCEEE-EecCCCcEEEEEccc
Q 021247          151 PTDK---SSSKKFVLSVAWSPDGRRIA-CGSMDGTISVFDVTR  189 (315)
Q Consensus       151 ~~~~---~~~~~~i~~~~~~~~~~~l~-~~s~dg~i~i~d~~~  189 (315)
                      +...   ..-...|+.+..|.|.++|. ++-..|.++.||+..
T Consensus       301 p~ml~~~~~~P~LitDI~iSlDDrfLYvs~W~~GdvrqYDISD  343 (461)
T PF05694_consen  301 PEMLKPFGAVPPLITDILISLDDRFLYVSNWLHGDVRQYDISD  343 (461)
T ss_dssp             -GGGGGG-EE------EEE-TTS-EEEEEETTTTEEEEEE-SS
T ss_pred             cccccccccCCCceEeEEEccCCCEEEEEcccCCcEEEEecCC
Confidence            0000   00123478999999999885 566899999999863

The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.

>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118

Probab=95.17  E-value=1.5  Score=36.01  Aligned_cols=233  Identities=14%  Similarity=0.185  Sum_probs=125.8

Q ss_pred             ceEEEEEeecCCCCCcEEEEeeCCCcEEEEcCC-------CCcceeeccc-----cccceEEEEeCCCC-----------
Q 021247           16 SVWAVTWVPATETRPALLLTGSLDETVKLWRPD-------DMQLERTNTG-----HCLGVVSVAAHPSG-----------   72 (315)
Q Consensus        16 ~v~~v~~~~~~~~~~~~l~sgs~d~~v~~w~~~-------~~~~~~~~~~-----h~~~v~~~~~~~~g-----------   72 (315)
                      .-|+++++|.+.    +-++....+...+|+.+       ...+...++.     .....+-+.|+...           
T Consensus        24 N~WGia~~p~~~----~WVadngT~~~TlYdg~~~~~~g~~~~L~vtiP~~~~~~~~~~PTGiVfN~~~~F~vt~~g~~~   99 (336)
T TIGR03118        24 NAWGLSYRPGGP----FWVANTGTGTATLYVGNPDTQPLVQDPLVVVIPAPPPLAAEGTPTGQVFNGSDTFVVSGEGITG   99 (336)
T ss_pred             ccceeEecCCCC----EEEecCCcceEEeecCCcccccCCccceEEEecCCCCCCCCCCccEEEEeCCCceEEcCCCccc
Confidence            568999999664    56777778899999875       1122223331     11234555554321           


Q ss_pred             -CEEEEeeCCCeEEEEECCCCce-----eEEeeCC-cccEE-EEEEC--CCCCeEEEEecCCCeEEEEecCCccee--ee
Q 021247           73 -IIAASASLDSFVRVFDVDTNAS-----IATLEAS-PSEVW-QMQFD--PKGTTLAVAGGGSASVKLWDTATWNLI--AT  140 (315)
Q Consensus        73 -~~l~s~~~d~~i~~w~~~~~~~-----~~~~~~~-~~~v~-~~~~~--~~~~~~~~~~~~d~~i~~~d~~~~~~~--~~  140 (315)
                       ..++-+++||+|.-|...-+..     +..++.. ...|+ .+++-  ..+..++++-=..++|.++|..-.+..  ..
T Consensus       100 ~a~Fif~tEdGTisaW~p~v~~t~~~~~~~~~d~s~~gavYkGLAi~~~~~~~~LYaadF~~g~IDVFd~~f~~~~~~g~  179 (336)
T TIGR03118       100 PSRFLFVTEDGTLSGWAPALGTTRMTRAEIVVDASQQGNVYKGLAVGPTGGGDYLYAANFRQGRIDVFKGSFRPPPLPGS  179 (336)
T ss_pred             ceeEEEEeCCceEEeecCcCCcccccccEEEEccCCCcceeeeeEEeecCCCceEEEeccCCCceEEecCccccccCCCC
Confidence             2356789999999999643322     2223322 23332 44443  335666665556789999986422110  00


Q ss_pred             ecCC-CCCCCCCCc--cCCCCcceEEEEECCCCCEEEEecCCCcEEEEEcccceeeeeec--CCccceEEEEEcC-----
Q 021247          141 LSIP-RPEGLKPTD--KSSSKKFVLSVAWSPDGRRIACGSMDGTISVFDVTRAKFLHHLE--GHFMPVRSLVYSP-----  210 (315)
Q Consensus       141 ~~~~-~~~~~~~~~--~~~~~~~i~~~~~~~~~~~l~~~s~dg~i~i~d~~~~~~~~~~~--~~~~~v~~~~~~~-----  210 (315)
                      +.-+ -+.+..|..  .....-+|+-..-.++.+.=+.|..-|.|-+||+. ++.++.+.  +.-...+.++..|     
T Consensus       180 F~DP~iPagyAPFnIqnig~~lyVtYA~qd~~~~d~v~G~G~G~VdvFd~~-G~l~~r~as~g~LNaPWG~a~APa~FG~  258 (336)
T TIGR03118       180 FIDPALPAGYAPFNVQNLGGTLYVTYAQQDADRNDEVAGAGLGYVNVFTLN-GQLLRRVASSGRLNAPWGLAIAPESFGS  258 (336)
T ss_pred             ccCCCCCCCCCCcceEEECCeEEEEEEecCCcccccccCCCcceEEEEcCC-CcEEEEeccCCcccCCceeeeChhhhCC
Confidence            1000 011111100  01111223222334444444555566789999974 55555542  2334456666544     


Q ss_pred             CCCcEEEEEeCCCeEEEEeCCCCeeEEEeeccc------ccEEEEEEcC
Q 021247          211 VDPRVLFSASDDTHVHMYDAEGKSLVTAMSGHA------SWVLSVDASP  253 (315)
Q Consensus       211 ~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~------~~i~~~~~~~  253 (315)
                      ..+.+|+---.||+|..||..++..+..+....      ...+.|.|-.
T Consensus       259 ~sg~lLVGNFGDG~InaFD~~sG~~~g~L~~~~G~pi~i~GLWgL~fGn  307 (336)
T TIGR03118       259 LSGALLVGNFGDGTINAYDPQSGAQLGQLLDPDNHPVKVDGLWSLTFGN  307 (336)
T ss_pred             CCCCeEEeecCCceeEEecCCCCceeeeecCCCCCeEEecCeEEeeeCC
Confidence            235677777789999999998887776665432      2345566644

This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.

>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]

Probab=94.97  E-value=0.71  Score=40.44  Aligned_cols=146  Identities=18%  Similarity=0.229  Sum_probs=86.8

Q ss_pred             CCCCCeEEEEecCCCeEEEEecCCcceeeeecCCCCCCCCCCccCCCCcceEEEEECCCC-------CEEEEecCCCcEE
Q 021247          111 DPKGTTLAVAGGGSASVKLWDTATWNLIATLSIPRPEGLKPTDKSSSKKFVLSVAWSPDG-------RRIACGSMDGTIS  183 (315)
Q Consensus       111 ~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-------~~l~~~s~dg~i~  183 (315)
                      +.+.+.++..|+....+.-.|+..++.+..+.....              + -+.|.|..       ..-++|-.+..|.
T Consensus       476 ~~dssli~~dg~~~~kLykmDIErGkvveeW~~~dd--------------v-vVqy~p~~kf~qmt~eqtlvGlS~~svF  540 (776)
T COG5167         476 DNDSSLIYLDGGERDKLYKMDIERGKVVEEWDLKDD--------------V-VVQYNPYFKFQQMTDEQTLVGLSDYSVF  540 (776)
T ss_pred             cCCcceEEecCCCcccceeeecccceeeeEeecCCc--------------c-eeecCCchhHHhcCccceEEeecccceE
Confidence            334455666666667788888888888877755332              1 34444432       1233444556666


Q ss_pred             EEEccc-ceeeeeecCCccceEEEEEcC---CCCcEEEEEeCCCeEEEEeCCCCeeEEEeecccccEEEEEEcCCCCeEE
Q 021247          184 VFDVTR-AKFLHHLEGHFMPVRSLVYSP---VDPRVLFSASDDTHVHMYDAEGKSLVTAMSGHASWVLSVDASPDGAAIT  259 (315)
Q Consensus       184 i~d~~~-~~~~~~~~~~~~~v~~~~~~~---~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~  259 (315)
                      -.|.+- +..+.... ...-.+.-.|+.   ....+++.++..|-|++||.-+......+.+-...|..+..+.+|.+++
T Consensus       541 rIDPR~~gNKi~v~e-sKdY~tKn~Fss~~tTesGyIa~as~kGDirLyDRig~rAKtalP~lG~aIk~idvta~Gk~il  619 (776)
T COG5167         541 RIDPRARGNKIKVVE-SKDYKTKNKFSSGMTTESGYIAAASRKGDIRLYDRIGKRAKTALPGLGDAIKHIDVTANGKHIL  619 (776)
T ss_pred             EecccccCCceeeee-ehhccccccccccccccCceEEEecCCCceeeehhhcchhhhcCcccccceeeeEeecCCcEEE
Confidence            667642 21111110 111111112221   2456899999999999999765555555666677899999999999877


Q ss_pred             EEeCCCcEEEEecC
Q 021247          260 TGSSDRTVKLWDLN  273 (315)
Q Consensus       260 s~~~d~~i~iwd~~  273 (315)
                      +.|. ..+.+-|++
T Consensus       620 aTCk-~yllL~d~~  632 (776)
T COG5167         620 ATCK-NYLLLTDVP  632 (776)
T ss_pred             Eeec-ceEEEEecc
Confidence            6654 456666653

>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A

Probab=94.93  E-value=1.8  Score=35.89  Aligned_cols=148  Identities=16%  Similarity=0.219  Sum_probs=80.9

Q ss_pred             ceEEEEECCCCCEEEEecCCCcEEEEEcccceeeeeecCCccceEEEEEcCCCCcEEEEEeCCCeEEEEe-CCCCeeEEE
Q 021247          160 FVLSVAWSPDGRRIACGSMDGTISVFDVTRAKFLHHLEGHFMPVRSLVYSPVDPRVLFSASDDTHVHMYD-AEGKSLVTA  238 (315)
Q Consensus       160 ~i~~~~~~~~~~~l~~~s~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd-~~~~~~~~~  238 (315)
                      .+..+.-+++|+++++++....+.-||.........-+.....+..|.|.|+ +.+.+ ....+.|+.=+ ....+....
T Consensus       146 s~~~~~r~~dG~~vavs~~G~~~~s~~~G~~~w~~~~r~~~~riq~~gf~~~-~~lw~-~~~Gg~~~~s~~~~~~~~w~~  223 (302)
T PF14870_consen  146 SINDITRSSDGRYVAVSSRGNFYSSWDPGQTTWQPHNRNSSRRIQSMGFSPD-GNLWM-LARGGQIQFSDDPDDGETWSE  223 (302)
T ss_dssp             -EEEEEE-TTS-EEEEETTSSEEEEE-TT-SS-EEEE--SSS-EEEEEE-TT-S-EEE-EETTTEEEEEE-TTEEEEE--
T ss_pred             eeEeEEECCCCcEEEEECcccEEEEecCCCccceEEccCccceehhceecCC-CCEEE-EeCCcEEEEccCCCCcccccc
Confidence            4778888999999999977777778886544344444445678999999984 54444 44778777766 222211111


Q ss_pred             -ee---cccccEEEEEEcCCCCeEEEEeCCCcEEEEecCccceehcc---cccccceEEEEEeeCCCEEEEEeCCCcEEE
Q 021247          239 -MS---GHASWVLSVDASPDGAAITTGSSDRTVKLWDLNMRAAMQSM---TNHTDQVWGVSFRPLGGRVVSVSDDKSISL  311 (315)
Q Consensus       239 -~~---~~~~~i~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~---~~~~~~v~~~~~s~~~~~l~s~~~d~~i~i  311 (315)
                       ..   ...-.+.++++.++++..++|+. |.+ +...+.++..+..   ..-...+..+.|.+. ..-+..+.+|.|.-
T Consensus       224 ~~~~~~~~~~~~ld~a~~~~~~~wa~gg~-G~l-~~S~DgGktW~~~~~~~~~~~n~~~i~f~~~-~~gf~lG~~G~ll~  300 (302)
T PF14870_consen  224 PIIPIKTNGYGILDLAYRPPNEIWAVGGS-GTL-LVSTDGGKTWQKDRVGENVPSNLYRIVFVNP-DKGFVLGQDGVLLR  300 (302)
T ss_dssp             -B-TTSS--S-EEEEEESSSS-EEEEEST-T-E-EEESSTTSS-EE-GGGTTSSS---EEEEEET-TEEEEE-STTEEEE
T ss_pred             ccCCcccCceeeEEEEecCCCCEEEEeCC-ccE-EEeCCCCccceECccccCCCCceEEEEEcCC-CceEEECCCcEEEE
Confidence             11   12233789999998887776654 443 3344445444332   223356888999865 56788888898876


Q ss_pred             e
Q 021247          312 Y  312 (315)
Q Consensus       312 ~  312 (315)
                      |
T Consensus       301 ~  301 (302)
T PF14870_consen  301 Y  301 (302)
T ss_dssp             E
T ss_pred             e
Confidence            5

>PF02333 Phytase: Phytase; InterPro: IPR003431 Phytase (3

Probab=94.79  E-value=2.3  Score=36.37  Aligned_cols=194  Identities=19%  Similarity=0.306  Sum_probs=107.8

Q ss_pred             EeecCCCCCcEEEEeeCCCcEEEEcCCCCcceeeccccccceEEEEeC----CCCCE--EEEee-CC---CeEEEEECCC
Q 021247           22 WVPATETRPALLLTGSLDETVKLWRPDDMQLERTNTGHCLGVVSVAAH----PSGII--AASAS-LD---SFVRVFDVDT   91 (315)
Q Consensus        22 ~~~~~~~~~~~l~sgs~d~~v~~w~~~~~~~~~~~~~h~~~v~~~~~~----~~g~~--l~s~~-~d---~~i~~w~~~~   91 (315)
                      |.+......++++.....+-+.+||++..++...-.+   .++.+..-    -.|..  |+.++ .+   .+|++|.+..
T Consensus        60 Wvnp~dp~kSlIigTdK~~GL~VYdL~Gk~lq~~~~G---r~NNVDvrygf~l~g~~vDlavas~R~~g~n~l~~f~id~  136 (381)
T PF02333_consen   60 WVNPADPAKSLIIGTDKKGGLYVYDLDGKELQSLPVG---RPNNVDVRYGFPLNGKTVDLAVASDRSDGRNSLRLFRIDP  136 (381)
T ss_dssp             E--SS-GGG-EEEEEETTTEEEEEETTS-EEEEE-SS----EEEEEEEEEEEETTEEEEEEEEEE-CCCT-EEEEEEEET
T ss_pred             ecCCCCcccceEEEEeCCCCEEEEcCCCcEEEeecCC---CcceeeeecceecCCceEEEEEEecCcCCCCeEEEEEecC
Confidence            5554444567899999999999999976555433223   22333221    13332  33333 22   4699998764


Q ss_pred             C-ceeEEeeC-------CcccEEEEEE--CC-CCCeEEEEecCCCeEEEEecCC---c----ceeeeecCCCCCCCCCCc
Q 021247           92 N-ASIATLEA-------SPSEVWQMQF--DP-KGTTLAVAGGGSASVKLWDTAT---W----NLIATLSIPRPEGLKPTD  153 (315)
Q Consensus        92 ~-~~~~~~~~-------~~~~v~~~~~--~~-~~~~~~~~~~~d~~i~~~d~~~---~----~~~~~~~~~~~~~~~~~~  153 (315)
                      . ..+..+..       ....+..+++  +| ++...++....+|.+..|.+..   +    ++++.+.++.        
T Consensus       137 ~~g~L~~v~~~~~p~~~~~~e~yGlcly~~~~~g~~ya~v~~k~G~~~Qy~L~~~~~g~v~~~lVR~f~~~s--------  208 (381)
T PF02333_consen  137 DTGELTDVTDPAAPIATDLSEPYGLCLYRSPSTGALYAFVNGKDGRVEQYELTDDGDGKVSATLVREFKVGS--------  208 (381)
T ss_dssp             TTTEEEE-CBTTC-EE-SSSSEEEEEEEE-TTT--EEEEEEETTSEEEEEEEEE-TTSSEEEEEEEEEE-SS--------
T ss_pred             CCCcceEcCCCCcccccccccceeeEEeecCCCCcEEEEEecCCceEEEEEEEeCCCCcEeeEEEEEecCCC--------
Confidence            2 23333321       1234666664  44 4566677778889888887642   2    2344444322        


Q ss_pred             cCCCCcceEEEEECCCCCEEEEecCCCcEEEEEcccc-----eeeeeecC--CccceEEEEEc--CCC-CcEEEEEeCCC
Q 021247          154 KSSSKKFVLSVAWSPDGRRIACGSMDGTISVFDVTRA-----KFLHHLEG--HFMPVRSLVYS--PVD-PRVLFSASDDT  223 (315)
Q Consensus       154 ~~~~~~~i~~~~~~~~~~~l~~~s~dg~i~i~d~~~~-----~~~~~~~~--~~~~v~~~~~~--~~~-~~~l~s~~~d~  223 (315)
                            .+..|+.......|..+-++--|.-|+.+..     +.+....+  ....|-.+++-  +.+ +.+++|.-.++
T Consensus       209 ------Q~EGCVVDDe~g~LYvgEE~~GIW~y~Aep~~~~~~~~v~~~~g~~l~aDvEGlaly~~~~g~gYLivSsQG~~  282 (381)
T PF02333_consen  209 ------QPEGCVVDDETGRLYVGEEDVGIWRYDAEPEGGNDRTLVASADGDGLVADVEGLALYYGSDGKGYLIVSSQGDN  282 (381)
T ss_dssp             -------EEEEEEETTTTEEEEEETTTEEEEEESSCCC-S--EEEEEBSSSSB-S-EEEEEEEE-CCC-EEEEEEEGGGT
T ss_pred             ------cceEEEEecccCCEEEecCccEEEEEecCCCCCCcceeeecccccccccCccceEEEecCCCCeEEEEEcCCCC
Confidence                  3778899888889999999988888887522     22322222  23456666653  222 34556666788


Q ss_pred             eEEEEeCCC
Q 021247          224 HVHMYDAEG  232 (315)
Q Consensus       224 ~i~~wd~~~  232 (315)
                      +..+|+.+.
T Consensus       283 sf~Vy~r~~  291 (381)
T PF02333_consen  283 SFAVYDREG  291 (381)
T ss_dssp             EEEEEESST
T ss_pred             eEEEEecCC
Confidence            999999875

1.3.8 from EC) (phytate 3-phosphatase) is a secreted enzyme which hydrolyses phytate to release inorganic phosphate. This family appears to represent a novel enzyme that shows phytase activity () and has been shown to consist of a single structural unit with a six-bladed propeller folding architecture ().; GO: 0016158 3-phytase activity; PDB: 3AMS_A 3AMR_A 1QLG_A 2POO_A 1H6L_A 1CVM_A 1POO_A.

>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs

Probab=94.77  E-value=1.1  Score=41.99  Aligned_cols=71  Identities=20%  Similarity=0.377  Sum_probs=50.6

Q ss_pred             ccEEEEEEcCCCCeEEEEeCCCcEEEEecCcc----------ce-e--hcc--------cccccceEEEEEeeC---CCE
Q 021247          244 SWVLSVDASPDGAAITTGSSDRTVKLWDLNMR----------AA-M--QSM--------TNHTDQVWGVSFRPL---GGR  299 (315)
Q Consensus       244 ~~i~~~~~~~~~~~l~s~~~d~~i~iwd~~~~----------~~-~--~~~--------~~~~~~v~~~~~s~~---~~~  299 (315)
                      ..|..+.++|+|++|+..|..| |.|-.+..+          +. .  +++        ..+...|..+.|+|.   +.+
T Consensus        85 f~v~~i~~n~~g~~lal~G~~~-v~V~~LP~r~g~~~~~~~g~~~i~Crt~~v~~~~~~~~~~~~i~qv~WhP~s~~~~~  163 (717)
T PF10168_consen   85 FEVHQISLNPTGSLLALVGPRG-VVVLELPRRWGKNGEFEDGKKEINCRTVPVDERFFTSNSSLEIKQVRWHPWSESDSH  163 (717)
T ss_pred             eeEEEEEECCCCCEEEEEcCCc-EEEEEeccccCccccccCCCcceeEEEEEechhhccCCCCceEEEEEEcCCCCCCCe
Confidence            3578899999999998888766 445444321          10 0  000        133457889999997   589


Q ss_pred             EEEEeCCCcEEEeecC
Q 021247          300 VVSVSDDKSISLYEYS  315 (315)
Q Consensus       300 l~s~~~d~~i~i~~~~  315 (315)
                      |+.-..|+++|+||+.
T Consensus       164 l~vLtsdn~lR~y~~~  179 (717)
T PF10168_consen  164 LVVLTSDNTLRLYDIS  179 (717)
T ss_pred             EEEEecCCEEEEEecC
Confidence            9999999999999973

It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].

>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases

Probab=94.76  E-value=2.2  Score=36.07  Aligned_cols=237  Identities=18%  Similarity=0.164  Sum_probs=112.9

Q ss_pred             eEEEEeCCCCCEEEEeeCCCeEEEEECCCCce---eEEe----eCCcccEEEEEECCC---CCeEEEEecC------C--
Q 021247           63 VVSVAAHPSGIIAASASLDSFVRVFDVDTNAS---IATL----EASPSEVWQMQFDPK---GTTLAVAGGG------S--  124 (315)
Q Consensus        63 v~~~~~~~~g~~l~s~~~d~~i~~w~~~~~~~---~~~~----~~~~~~v~~~~~~~~---~~~~~~~~~~------d--  124 (315)
                      ..+|++.|+|.++++ ...|.|++++ ..+..   +..+    .........++++|+   +..++++...      .  
T Consensus         4 P~~~a~~pdG~l~v~-e~~G~i~~~~-~~g~~~~~v~~~~~v~~~~~~gllgia~~p~f~~n~~lYv~~t~~~~~~~~~~   81 (331)
T PF07995_consen    4 PRSMAFLPDGRLLVA-ERSGRIWVVD-KDGSLKTPVADLPEVFADGERGLLGIAFHPDFASNGYLYVYYTNADEDGGDND   81 (331)
T ss_dssp             EEEEEEETTSCEEEE-ETTTEEEEEE-TTTEECEEEEE-TTTBTSTTBSEEEEEE-TTCCCC-EEEEEEEEE-TSSSSEE
T ss_pred             ceEEEEeCCCcEEEE-eCCceEEEEe-CCCcCcceecccccccccccCCcccceeccccCCCCEEEEEEEcccCCCCCcc
Confidence            578999999988775 5599999999 33332   2222    122345789999994   3444444331      1  


Q ss_pred             CeEEEEecCCc--ce--eeeecCCCCCCCCCCccCCCCcceEEEEECCCCCEEEEecCCC-------------cEEEEEc
Q 021247          125 ASVKLWDTATW--NL--IATLSIPRPEGLKPTDKSSSKKFVLSVAWSPDGRRIACGSMDG-------------TISVFDV  187 (315)
Q Consensus       125 ~~i~~~d~~~~--~~--~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~s~dg-------------~i~i~d~  187 (315)
                      ..|.-|.....  ..  ...+....+.      .......-..|.|.|+|.+.++.+..+             .|.-.+.
T Consensus        82 ~~v~r~~~~~~~~~~~~~~~l~~~~p~------~~~~~H~g~~l~fgpDG~LYvs~G~~~~~~~~~~~~~~~G~ilri~~  155 (331)
T PF07995_consen   82 NRVVRFTLSDGDGDLSSEEVLVTGLPD------TSSGNHNGGGLAFGPDGKLYVSVGDGGNDDNAQDPNSLRGKILRIDP  155 (331)
T ss_dssp             EEEEEEEEETTSCEEEEEEEEEEEEES-------CSSSS-EEEEEE-TTSEEEEEEB-TTTGGGGCSTTSSTTEEEEEET
T ss_pred             eeeEEEeccCCccccccceEEEEEeCC------CCCCCCCCccccCCCCCcEEEEeCCCCCcccccccccccceEEEecc
Confidence            12222322221  00  0111000000      001223356799999997666543322             2322332


Q ss_pred             cccee-------------eeee-cCCccceEEEEEcCCCCcEEEEE-eCCC--eEEEEeCC--------C------C---
Q 021247          188 TRAKF-------------LHHL-EGHFMPVRSLVYSPVDPRVLFSA-SDDT--HVHMYDAE--------G------K---  233 (315)
Q Consensus       188 ~~~~~-------------~~~~-~~~~~~v~~~~~~~~~~~~l~s~-~~d~--~i~~wd~~--------~------~---  233 (315)
                      . ++.             ...+ .++. ....++|+|..+.++++- +.+.  .|.+...-        .      +   
T Consensus       156 d-G~~p~dnP~~~~~~~~~~i~A~GlR-N~~~~~~d~~tg~l~~~d~G~~~~dein~i~~G~nYGWP~~~~~~~~~~~~~  233 (331)
T PF07995_consen  156 D-GSIPADNPFVGDDGADSEIYAYGLR-NPFGLAFDPNTGRLWAADNGPDGWDEINRIEPGGNYGWPYCEGGPKYSGPPI  233 (331)
T ss_dssp             T-SSB-TTSTTTTSTTSTTTEEEE--S-EEEEEEEETTTTEEEEEEE-SSSSEEEEEE-TT-B--TTTBSSSCSTTSS-E
T ss_pred             c-CcCCCCCccccCCCceEEEEEeCCC-ccccEEEECCCCcEEEEccCCCCCcEEEEeccCCcCCCCCCcCCCCCCCCcc
Confidence            1 110             0000 1122 235788988545554432 2222  23322110        0      0   


Q ss_pred             ----------eeEEEeecccccEEEEEEcC-------CCCeEEEEeCCCcEEEEecCcccee---hc-ccccccceEEEE
Q 021247          234 ----------SLVTAMSGHASWVLSVDASP-------DGAAITTGSSDRTVKLWDLNMRAAM---QS-MTNHTDQVWGVS  292 (315)
Q Consensus       234 ----------~~~~~~~~~~~~i~~~~~~~-------~~~~l~s~~~d~~i~iwd~~~~~~~---~~-~~~~~~~v~~~~  292 (315)
                                ..+..+. +...+..+.|-.       .+.++++.-..+.|....++....+   .. +......+..++
T Consensus       234 ~~~~~~~~~~~P~~~~~-~~~ap~G~~~y~g~~fp~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~r~~~v~  312 (331)
T PF07995_consen  234 GDAPSCPGFVPPVFAYP-PHSAPTGIIFYRGSAFPEYRGDLFVADYGGGRIWRLDLDEDGSVTEEEEFLGGFGGRPRDVA  312 (331)
T ss_dssp             CTGSS-TTS---SEEET-TT--EEEEEEE-SSSSGGGTTEEEEEETTTTEEEEEEEETTEEEEEEEEECTTSSS-EEEEE
T ss_pred             ccccCCCCcCccceeec-CccccCceEEECCccCccccCcEEEecCCCCEEEEEeeecCCCccceEEccccCCCCceEEE
Confidence                      0111222 234566666653       3456666666677887777643221   11 223344789999


Q ss_pred             EeeCCCEEEEEeCCCcEE
Q 021247          293 FRPLGGRVVSVSDDKSIS  310 (315)
Q Consensus       293 ~s~~~~~l~s~~~d~~i~  310 (315)
                      +.|||...++...+|+|.
T Consensus       313 ~~pDG~Lyv~~d~~G~iy  330 (331)
T PF07995_consen  313 QGPDGALYVSDDSDGKIY  330 (331)
T ss_dssp             EETTSEEEEEE-TTTTEE
T ss_pred             EcCCCeEEEEECCCCeEe
Confidence            999999888888889884

The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....

>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=94.64  E-value=2  Score=34.89  Aligned_cols=102  Identities=20%  Similarity=0.243  Sum_probs=60.4

Q ss_pred             EEEEECCCCCeEEEEecCCC-eEEEEecCCcceeeeecCCCCCCCCCCccCCCCcceEEEEECCCCCEEEEecC-----C
Q 021247          106 WQMQFDPKGTTLAVAGGGSA-SVKLWDTATWNLIATLSIPRPEGLKPTDKSSSKKFVLSVAWSPDGRRIACGSM-----D  179 (315)
Q Consensus       106 ~~~~~~~~~~~~~~~~~~d~-~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~s~-----d  179 (315)
                      -.+.++|.-..-++.+-.-| ...++|....+...++...+           ...+.-.=+|+|||.+|.+.-+     .
T Consensus        71 Hgi~~~p~~~ravafARrPGtf~~vfD~~~~~~pv~~~s~~-----------~RHfyGHGvfs~dG~~LYATEndfd~~r  139 (366)
T COG3490          71 HGIAFHPALPRAVAFARRPGTFAMVFDPNGAQEPVTLVSQE-----------GRHFYGHGVFSPDGRLLYATENDFDPNR  139 (366)
T ss_pred             CCeecCCCCcceEEEEecCCceEEEECCCCCcCcEEEeccc-----------CceeecccccCCCCcEEEeecCCCCCCC
Confidence            35677776544333333333 35667777665554443221           1222334578999999987643     3


Q ss_pred             CcEEEEEcccc-eeeeeecCCccceEEEEEcCCCCcEEEEE
Q 021247          180 GTISVFDVTRA-KFLHHLEGHFMPVRSLVYSPVDPRVLFSA  219 (315)
Q Consensus       180 g~i~i~d~~~~-~~~~~~~~~~~~v~~~~~~~~~~~~l~s~  219 (315)
                      |.|-+||.+.+ +.+..+..|......+.+.+ +++.++.+
T Consensus       140 GViGvYd~r~~fqrvgE~~t~GiGpHev~lm~-DGrtlvva  179 (366)
T COG3490         140 GVIGVYDAREGFQRVGEFSTHGIGPHEVTLMA-DGRTLVVA  179 (366)
T ss_pred             ceEEEEecccccceecccccCCcCcceeEEec-CCcEEEEe
Confidence            67999998633 34556667766667777877 45555443

>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=94.61  E-value=0.92  Score=43.63  Aligned_cols=136  Identities=15%  Similarity=0.128  Sum_probs=80.4

Q ss_pred             ceEEEEeCCCCCEEE--EeeCCCeEEEEECCCCceeE-----------EeeCCcccEEEEEECCCCCeEEEEecCCCeEE
Q 021247           62 GVVSVAAHPSGIIAA--SASLDSFVRVFDVDTNASIA-----------TLEASPSEVWQMQFDPKGTTLAVAGGGSASVK  128 (315)
Q Consensus        62 ~v~~~~~~~~g~~l~--s~~~d~~i~~w~~~~~~~~~-----------~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~  128 (315)
                      ++..+...+|+...+  ..+.+..|..+|+++-....           +.........++.|+|.-....+.+..|+.|+
T Consensus       102 pi~~~v~~~D~t~s~v~~tsng~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp~n~av~l~dlsl~  181 (1405)
T KOG3630|consen  102 PIVIFVCFHDATDSVVVSTSNGEAVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVPLNSAVDLSDLSLR  181 (1405)
T ss_pred             cceEEEeccCCceEEEEEecCCceEEEEehHhhhhhhhhhccccccccchhccccccccccccCCccchhhhhccccchh
Confidence            444555566765444  44555689999987643211           11112234567889887655556667788777


Q ss_pred             EEecCCcceeeeecCCCCCCCCCCccCCCCcceEEEEECCCCCEEEEecCCCcEEEEEcccc--eeeeeecC-CccceEE
Q 021247          129 LWDTATWNLIATLSIPRPEGLKPTDKSSSKKFVLSVAWSPDGRRIACGSMDGTISVFDVTRA--KFLHHLEG-HFMPVRS  205 (315)
Q Consensus       129 ~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~s~dg~i~i~d~~~~--~~~~~~~~-~~~~v~~  205 (315)
                      +.-+......             ........-.++++|+|.|+.++.|-..|++.-|-..-.  +.+..... ....|.+
T Consensus       182 V~~~~~~~~~-------------v~s~p~t~~~Tav~WSprGKQl~iG~nnGt~vQy~P~leik~~ip~Pp~~e~yrvl~  248 (1405)
T KOG3630|consen  182 VKSTKQLAQN-------------VTSFPVTNSQTAVLWSPRGKQLFIGRNNGTEVQYEPSLEIKSEIPEPPVEENYRVLS  248 (1405)
T ss_pred             hhhhhhhhhh-------------hcccCcccceeeEEeccccceeeEecCCCeEEEeecccceeecccCCCcCCCcceeE
Confidence            7655321110             000111223789999999999999999999998875422  11111111 1356888


Q ss_pred             EEEcC
Q 021247          206 LVYSP  210 (315)
Q Consensus       206 ~~~~~  210 (315)
                      +.|-.
T Consensus       249 v~Wl~  253 (1405)
T KOG3630|consen  249 VTWLS  253 (1405)
T ss_pred             EEEec
Confidence            88864

>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length

Probab=94.48  E-value=2.1  Score=39.24  Aligned_cols=98  Identities=17%  Similarity=0.261  Sum_probs=63.9

Q ss_pred             cEEEEEeCCCeEEEEeCCCCeeEEEee-cccccEEEEEEc--CCCCeEEEEeCCCcEEEEecC---------ccceehc-
Q 021247          214 RVLFSASDDTHVHMYDAEGKSLVTAMS-GHASWVLSVDAS--PDGAAITTGSSDRTVKLWDLN---------MRAAMQS-  280 (315)
Q Consensus       214 ~~l~s~~~d~~i~~wd~~~~~~~~~~~-~~~~~i~~~~~~--~~~~~l~s~~~d~~i~iwd~~---------~~~~~~~-  280 (315)
                      +..+.-+....+.|||.+.+.+...-. ...+.|.+++|.  |+++.+++.|-.+.|.++--.         +...++. 
T Consensus        42 k~a~V~~~~~~LtIWD~~~~~lE~~~~f~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~Q~R~dy~~~~p~w~~i~~i  121 (631)
T PF12234_consen   42 KIAVVDSSRSELTIWDTRSGVLEYEESFSEDDPIRDLDWTSTPDGQSILAVGFPHHVLLYTQLRYDYTNKGPSWAPIRKI  121 (631)
T ss_pred             cEEEEECCCCEEEEEEcCCcEEEEeeeecCCCceeeceeeecCCCCEEEEEEcCcEEEEEEccchhhhcCCcccceeEEE
Confidence            344444455679999999876443322 446789999975  578899999999999998431         1122222 


Q ss_pred             -ccccc-cceEEEEEeeCCCEEEEEeCCCcEEEee
Q 021247          281 -MTNHT-DQVWGVSFRPLGGRVVSVSDDKSISLYE  313 (315)
Q Consensus       281 -~~~~~-~~v~~~~~s~~~~~l~s~~~d~~i~i~~  313 (315)
                       +..|+ .+|.+..|.++|..+++.|.  .+.||+
T Consensus       122 ~i~~~T~h~Igds~Wl~~G~LvV~sGN--qlfv~d  154 (631)
T PF12234_consen  122 DISSHTPHPIGDSIWLKDGTLVVGSGN--QLFVFD  154 (631)
T ss_pred             EeecCCCCCccceeEecCCeEEEEeCC--EEEEEC
Confidence             12333 57889999999977665543  344443

This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.

>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]

Probab=94.42  E-value=1.8  Score=33.43  Aligned_cols=170  Identities=12%  Similarity=0.087  Sum_probs=87.3

Q ss_pred             eEEEEecC--CCeEEEEecCCcceeeeecCCCCCCCCCCccCCCCcceEEEEECCCCCEE-EEecCCCcEEEEEccccee
Q 021247          116 TLAVAGGG--SASVKLWDTATWNLIATLSIPRPEGLKPTDKSSSKKFVLSVAWSPDGRRI-ACGSMDGTISVFDVTRAKF  192 (315)
Q Consensus       116 ~~~~~~~~--d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l-~~~s~dg~i~i~d~~~~~~  192 (315)
                      .++.+.+.  ...|++||+.+++.+.+.+++.+.-+ -..       ++     .-++.+ .-.-.+|.-..+|..+.+.
T Consensus        57 ~i~esTG~yg~S~ir~~~L~~gq~~~s~~l~~~~~F-gEG-------it-----~~gd~~y~LTw~egvaf~~d~~t~~~  123 (262)
T COG3823          57 HILESTGLYGFSKIRVSDLTTGQEIFSEKLAPDTVF-GEG-------IT-----KLGDYFYQLTWKEGVAFKYDADTLEE  123 (262)
T ss_pred             EEEEeccccccceeEEEeccCceEEEEeecCCcccc-ccc-------ee-----eccceEEEEEeccceeEEEChHHhhh
Confidence            44444443  45799999999998887776521100 000       11     112333 2334678888999887776


Q ss_pred             eeeecCCccceEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCeeEEE----eecc-cccEEEEEEcCCCCeEEEEeCCCcE
Q 021247          193 LHHLEGHFMPVRSLVYSPVDPRVLFSASDDTHVHMYDAEGKSLVTA----MSGH-ASWVLSVDASPDGAAITTGSSDRTV  267 (315)
Q Consensus       193 ~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~----~~~~-~~~i~~~~~~~~~~~l~s~~~d~~i  267 (315)
                      +..+. .++.-+.+..   ++..|+.+....++..-|.++......    ..+. ...++.+.|- +|.+.|-.-.+..|
T Consensus       124 lg~~~-y~GeGWgLt~---d~~~LimsdGsatL~frdP~tfa~~~~v~VT~~g~pv~~LNELE~V-dG~lyANVw~t~~I  198 (262)
T COG3823         124 LGRFS-YEGEGWGLTS---DDKNLIMSDGSATLQFRDPKTFAELDTVQVTDDGVPVSKLNELEWV-DGELYANVWQTTRI  198 (262)
T ss_pred             hcccc-cCCcceeeec---CCcceEeeCCceEEEecCHHHhhhcceEEEEECCeecccccceeee-ccEEEEeeeeecce
Confidence            65443 1223344432   233355555555677667654332222    1211 1223334443 34444444444444


Q ss_pred             EEEecCccceehcc------------cccccceEEEEEeeCCCEEEEE
Q 021247          268 KLWDLNMRAAMQSM------------TNHTDQVWGVSFRPLGGRVVSV  303 (315)
Q Consensus       268 ~iwd~~~~~~~~~~------------~~~~~~v~~~~~s~~~~~l~s~  303 (315)
                      ...+.++++.+..+            ..|.+-.+.+++.|++.++...
T Consensus       199 ~rI~p~sGrV~~widlS~L~~~~~~~~~~~nvlNGIA~~~~~~r~~iT  246 (262)
T COG3823         199 ARIDPDSGRVVAWIDLSGLLKELNLDKSNDNVLNGIAHDPQQDRFLIT  246 (262)
T ss_pred             EEEcCCCCcEEEEEEccCCchhcCccccccccccceeecCcCCeEEEe
Confidence            44455555443322            2344567889999998665443

>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family

Probab=94.37  E-value=4.8  Score=38.22  Aligned_cols=206  Identities=13%  Similarity=0.094  Sum_probs=112.7

Q ss_pred             CcEEEEeeCCCcEEEEcCCCCcceeecccccc--------ceEEEEeC----------------CCCCEEEEeeCCCeEE
Q 021247           30 PALLLTGSLDETVKLWRPDDMQLERTNTGHCL--------GVVSVAAH----------------PSGIIAASASLDSFVR   85 (315)
Q Consensus        30 ~~~l~sgs~d~~v~~w~~~~~~~~~~~~~h~~--------~v~~~~~~----------------~~g~~l~s~~~d~~i~   85 (315)
                      ...++.++.++.|.-.|.++++....+.-...        ....+.+.                .++..++.++.|+.+.
T Consensus       194 gg~lYv~t~~~~V~ALDa~TGk~lW~~d~~~~~~~~~~~~~cRGvay~~~p~~~~~~~~~~~p~~~~~rV~~~T~Dg~Li  273 (764)
T TIGR03074       194 GDTLYLCTPHNKVIALDAATGKEKWKFDPKLKTEAGRQHQTCRGVSYYDAPAAAAGPAAPAAPADCARRIILPTSDARLI  273 (764)
T ss_pred             CCEEEEECCCCeEEEEECCCCcEEEEEcCCCCcccccccccccceEEecCCcccccccccccccccCCEEEEecCCCeEE
Confidence            35788888889998899888776654321110        01111111                1334777788899999


Q ss_pred             EEECCCCceeEEeeCCcccEE-------------EEEECC--CCCeEEEEec---------CCCeEEEEecCCcceeeee
Q 021247           86 VFDVDTNASIATLEASPSEVW-------------QMQFDP--KGTTLAVAGG---------GSASVKLWDTATWNLIATL  141 (315)
Q Consensus        86 ~w~~~~~~~~~~~~~~~~~v~-------------~~~~~~--~~~~~~~~~~---------~d~~i~~~d~~~~~~~~~~  141 (315)
                      -.|.++++....+... ..+.             ...-.|  .+..+++.+.         -+|.|+-+|.++++++..+
T Consensus       274 ALDA~TGk~~W~fg~~-G~vdl~~~~g~~~~g~~~~ts~P~V~~g~VIvG~~v~d~~~~~~~~G~I~A~Da~TGkl~W~~  352 (764)
T TIGR03074       274 ALDADTGKLCEDFGNN-GTVDLTAGMGTTPPGYYYPTSPPLVAGTTVVIGGRVADNYSTDEPSGVIRAFDVNTGALVWAW  352 (764)
T ss_pred             EEECCCCCEEEEecCC-CceeeecccCcCCCcccccccCCEEECCEEEEEecccccccccCCCcEEEEEECCCCcEeeEE
Confidence            9999999887665321 1110             001111  1223333221         1588999999999999887


Q ss_pred             cCCCCCCCCCCcc------CCCCcceEEEEECCCCCEEEEec------------------CCCcEEEEEcccceeeeeec
Q 021247          142 SIPRPEGLKPTDK------SSSKKFVLSVAWSPDGRRIACGS------------------MDGTISVFDVTRAKFLHHLE  197 (315)
Q Consensus       142 ~~~~~~~~~~~~~------~~~~~~i~~~~~~~~~~~l~~~s------------------~dg~i~i~d~~~~~~~~~~~  197 (315)
                      ....+....+...      .....+ ..++++++...++.+.                  ..+.|.-.|+++++..=.++
T Consensus       353 ~~g~p~~~~~~~~g~~~~~gg~n~W-~~~s~D~~~glvy~ptGn~~pd~~g~~r~~~~n~y~~slvALD~~TGk~~W~~Q  431 (764)
T TIGR03074       353 DPGNPDPTAPPAPGETYTRNTPNSW-SVASYDEKLGLVYLPMGNQTPDQWGGDRTPADEKYSSSLVALDATTGKERWVFQ  431 (764)
T ss_pred             ecCCCCcccCCCCCCEeccCCCCcc-CceEEcCCCCeEEEeCCCccccccCCccccCcccccceEEEEeCCCCceEEEec
Confidence            6432221111000      000000 2345555544443322                  23456677888887654443


Q ss_pred             C-Ccc--------ceEEEEEcCCCC---cEEEEEeCCCeEEEEeCCCCeeEE
Q 021247          198 G-HFM--------PVRSLVYSPVDP---RVLFSASDDTHVHMYDAEGKSLVT  237 (315)
Q Consensus       198 ~-~~~--------~v~~~~~~~~~~---~~l~s~~~d~~i~~wd~~~~~~~~  237 (315)
                      . |..        ...-+.+...++   ..++.++.+|.+++.|.++++.+-
T Consensus       432 ~~~hD~WD~D~~~~p~L~d~~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~l~  483 (764)
T TIGR03074       432 TVHHDLWDMDVPAQPSLVDLPDADGTTVPALVAPTKQGQIYVLDRRTGEPIV  483 (764)
T ss_pred             ccCCccccccccCCceEEeeecCCCcEeeEEEEECCCCEEEEEECCCCCEEe
Confidence            2 211        111122221133   378899999999999998876654

This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.

>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs

Probab=94.05  E-value=2  Score=40.31  Aligned_cols=28  Identities=21%  Similarity=0.387  Sum_probs=20.8

Q ss_pred             cceEEEEeCCCCCEEEEeeCCCeEEEEEC
Q 021247           61 LGVVSVAAHPSGIIAASASLDSFVRVFDV   89 (315)
Q Consensus        61 ~~v~~~~~~~~g~~l~s~~~d~~i~~w~~   89 (315)
                      ..|..+.++|+|.+++-.|..+ |-|-.+
T Consensus        85 f~v~~i~~n~~g~~lal~G~~~-v~V~~L  112 (717)
T PF10168_consen   85 FEVHQISLNPTGSLLALVGPRG-VVVLEL  112 (717)
T ss_pred             eeEEEEEECCCCCEEEEEcCCc-EEEEEe
Confidence            3578889999999999888766 444444

It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].

>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins

Probab=94.02  E-value=0.28  Score=27.11  Aligned_cols=31  Identities=23%  Similarity=0.260  Sum_probs=25.2

Q ss_pred             cEEEEEECCCCC--eEEEEecCCCeEEEEecCC
Q 021247          104 EVWQMQFDPKGT--TLAVAGGGSASVKLWDTAT  134 (315)
Q Consensus       104 ~v~~~~~~~~~~--~~~~~~~~d~~i~~~d~~~  134 (315)
                      .+.+++|+|...  .+++-....+.|.++|+++
T Consensus         2 AvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~   34 (43)
T PF10313_consen    2 AVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRS   34 (43)
T ss_pred             CeEEEEeCCCCCcccEEEEEccCCeEEEEEccc
Confidence            578899998655  6777777889999999984

It contains a characteristic DLL sequence motif.

>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A

Probab=94.02  E-value=3.1  Score=34.60  Aligned_cols=156  Identities=18%  Similarity=0.189  Sum_probs=77.2

Q ss_pred             cccceEEEEeCCCCCEEEEeeCCCeEEEEECCCCceeEEeeCCcccEEEEEECCCCCeEEEEecCCCeEEEEecCCccee
Q 021247           59 HCLGVVSVAAHPSGIIAASASLDSFVRVFDVDTNASIATLEASPSEVWQMQFDPKGTTLAVAGGGSASVKLWDTATWNLI  138 (315)
Q Consensus        59 h~~~v~~~~~~~~g~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~  138 (315)
                      -...+..+..+++|.+++.++.-....-|+.-...-..........+..|.|.|++...+++  ..+.|+.=+...  ..
T Consensus       143 ~~gs~~~~~r~~dG~~vavs~~G~~~~s~~~G~~~w~~~~r~~~~riq~~gf~~~~~lw~~~--~Gg~~~~s~~~~--~~  218 (302)
T PF14870_consen  143 TSGSINDITRSSDGRYVAVSSRGNFYSSWDPGQTTWQPHNRNSSRRIQSMGFSPDGNLWMLA--RGGQIQFSDDPD--DG  218 (302)
T ss_dssp             ----EEEEEE-TTS-EEEEETTSSEEEEE-TT-SS-EEEE--SSS-EEEEEE-TTS-EEEEE--TTTEEEEEE-TT--EE
T ss_pred             CcceeEeEEECCCCcEEEEECcccEEEEecCCCccceEEccCccceehhceecCCCCEEEEe--CCcEEEEccCCC--Cc
Confidence            34668888889999988877655556677754332333334456789999999998765543  667888776211  11


Q ss_pred             eeecCCCCCCCCCCccCCCCcceEEEEECCCCCEEEEecCCCcEEEEEcccceeeeeecC---CccceEEEEEcCCCCcE
Q 021247          139 ATLSIPRPEGLKPTDKSSSKKFVLSVAWSPDGRRIACGSMDGTISVFDVTRAKFLHHLEG---HFMPVRSLVYSPVDPRV  215 (315)
Q Consensus       139 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~s~dg~i~i~d~~~~~~~~~~~~---~~~~v~~~~~~~~~~~~  215 (315)
                      ..+..+..    +  .......+..++|.+++...++|+.. . .+.....++..+....   -......+.|.+  +..
T Consensus       219 ~~w~~~~~----~--~~~~~~~~ld~a~~~~~~~wa~gg~G-~-l~~S~DgGktW~~~~~~~~~~~n~~~i~f~~--~~~  288 (302)
T PF14870_consen  219 ETWSEPII----P--IKTNGYGILDLAYRPPNEIWAVGGSG-T-LLVSTDGGKTWQKDRVGENVPSNLYRIVFVN--PDK  288 (302)
T ss_dssp             EEE---B-----T--TSS--S-EEEEEESSSS-EEEEESTT---EEEESSTTSS-EE-GGGTTSSS---EEEEEE--TTE
T ss_pred             cccccccC----C--cccCceeeEEEEecCCCCEEEEeCCc-c-EEEeCCCCccceECccccCCCCceEEEEEcC--CCc
Confidence            11111000    0  01112237899999988777777554 3 2334445554444332   223467777764  235


Q ss_pred             EEEEeCCCeEEEE
Q 021247          216 LFSASDDTHVHMY  228 (315)
Q Consensus       216 l~s~~~d~~i~~w  228 (315)
                      -+.-+.+|.|.-|
T Consensus       289 gf~lG~~G~ll~~  301 (302)
T PF14870_consen  289 GFVLGQDGVLLRY  301 (302)
T ss_dssp             EEEE-STTEEEEE
T ss_pred             eEEECCCcEEEEe
Confidence            5566677877655

>PRK10115 protease 2; Provisional

Probab=93.84  E-value=6  Score=37.30  Aligned_cols=194  Identities=13%  Similarity=0.068  Sum_probs=92.7

Q ss_pred             cEEEEEECCCCCeEEEEecCC----CeEEEEecCCcceeeeecCCCCCCCCCCccCCCCcceEEEEECCCCCEEEEecCC
Q 021247          104 EVWQMQFDPKGTTLAVAGGGS----ASVKLWDTATWNLIATLSIPRPEGLKPTDKSSSKKFVLSVAWSPDGRRIACGSMD  179 (315)
Q Consensus       104 ~v~~~~~~~~~~~~~~~~~~d----~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~s~d  179 (315)
                      .+..+.++|+++.++++...+    -+|++.|+.+++.+...       .      ...  -..++|.+|++.|+....+
T Consensus       128 ~l~~~~~Spdg~~la~~~d~~G~E~~~l~v~d~~tg~~l~~~-------i------~~~--~~~~~w~~D~~~~~y~~~~  192 (686)
T PRK10115        128 TLGGMAITPDNTIMALAEDFLSRRQYGIRFRNLETGNWYPEL-------L------DNV--EPSFVWANDSWTFYYVRKH  192 (686)
T ss_pred             EEeEEEECCCCCEEEEEecCCCcEEEEEEEEECCCCCCCCcc-------c------cCc--ceEEEEeeCCCEEEEEEec
Confidence            355678999999887765443    35778888765422110       0      000  1358999999877655432


Q ss_pred             ------CcEEEEEcccce--eeeeecCCccceEEEEEcCCCCcEEE-EEe--CCCeEEEEeCC--CCeeEEEeecccccE
Q 021247          180 ------GTISVFDVTRAK--FLHHLEGHFMPVRSLVYSPVDPRVLF-SAS--DDTHVHMYDAE--GKSLVTAMSGHASWV  246 (315)
Q Consensus       180 ------g~i~i~d~~~~~--~~~~~~~~~~~v~~~~~~~~~~~~l~-s~~--~d~~i~~wd~~--~~~~~~~~~~~~~~i  246 (315)
                            ..|+.+++.++.  -...+........-..+.+.++++++ ...  .++.+.+++..  .+.....+.......
T Consensus       193 ~~~~~~~~v~~h~lgt~~~~d~lv~~e~~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~  272 (686)
T PRK10115        193 PVTLLPYQVWRHTIGTPASQDELVYEEKDDTFYVSLHKTTSKHYVVIHLASATTSEVLLLDAELADAEPFVFLPRRKDHE  272 (686)
T ss_pred             CCCCCCCEEEEEECCCChhHCeEEEeeCCCCEEEEEEEcCCCCEEEEEEECCccccEEEEECcCCCCCceEEEECCCCCE
Confidence                  357778887762  22222222222222223332444433 332  24578888842  222221121111222


Q ss_pred             EEEEEcCCCCeEEEEeC-CCcEEEE--ecCccceehccccc-c-cceEEEEEeeCCCEEEEEeCCCcEEEeec
Q 021247          247 LSVDASPDGAAITTGSS-DRTVKLW--DLNMRAAMQSMTNH-T-DQVWGVSFRPLGGRVVSVSDDKSISLYEY  314 (315)
Q Consensus       247 ~~~~~~~~~~~l~s~~~-d~~i~iw--d~~~~~~~~~~~~~-~-~~v~~~~~s~~~~~l~s~~~d~~i~i~~~  314 (315)
                      ..+. +..+.+.+.... ...-++.  ++........+..+ . ..+..+.+.. +..+++...++.-+++-+
T Consensus       273 ~~~~-~~~~~ly~~tn~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~-~~l~~~~~~~g~~~l~~~  343 (686)
T PRK10115        273 YSLD-HYQHRFYLRSNRHGKNFGLYRTRVRDEQQWEELIPPRENIMLEGFTLFT-DWLVVEERQRGLTSLRQI  343 (686)
T ss_pred             EEEE-eCCCEEEEEEcCCCCCceEEEecCCCcccCeEEECCCCCCEEEEEEEEC-CEEEEEEEeCCEEEEEEE
Confidence            2222 222333222222 2233333  44321222333334 2 2577777763 344566777776666543

>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin

Probab=93.74  E-value=0.68  Score=36.50  Aligned_cols=63  Identities=16%  Similarity=0.255  Sum_probs=47.3

Q ss_pred             EcCCCCeEEEEeCCCcEEEEecCccceehc-------cc-------ccccceEEEEEeeCCCEEEEEeCCCcEEEeec
Q 021247          251 ASPDGAAITTGSSDRTVKLWDLNMRAAMQS-------MT-------NHTDQVWGVSFRPLGGRVVSVSDDKSISLYEY  314 (315)
Q Consensus       251 ~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~-------~~-------~~~~~v~~~~~s~~~~~l~s~~~d~~i~i~~~  314 (315)
                      +..++.+|++-+.+|.+++||+..++.+..       +.       .....|..+.++.+|.-|++.++ |....|+.
T Consensus        18 l~~~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~lsn-g~~y~y~~   94 (219)
T PF07569_consen   18 LECNGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVTLSN-GDSYSYSP   94 (219)
T ss_pred             EEeCCCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCCEEEEEeC-CCEEEecc
Confidence            345678899999999999999988765322       22       24567899999998887777765 67777764

These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus

>PRK13684 Ycf48-like protein; Provisional

Probab=93.72  E-value=3.8  Score=34.72  Aligned_cols=107  Identities=13%  Similarity=0.139  Sum_probs=60.1

Q ss_pred             ccceEEEEEcCCCCcEEEEEeCCCeEEE-EeCCCCeeEEEeecccccEEEEEEcCCCCeEEEEeCCCcEEEEecCcccee
Q 021247          200 FMPVRSLVYSPVDPRVLFSASDDTHVHM-YDAEGKSLVTAMSGHASWVLSVDASPDGAAITTGSSDRTVKLWDLNMRAAM  278 (315)
Q Consensus       200 ~~~v~~~~~~~~~~~~l~s~~~d~~i~~-wd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~  278 (315)
                      ...+..+.+.| ++.+ +..+..|.+.. +|....+-......-...++++.+.++++.++.+ ..|.+++=..+.+..+
T Consensus       172 ~g~~~~i~~~~-~g~~-v~~g~~G~i~~s~~~gg~tW~~~~~~~~~~l~~i~~~~~g~~~~vg-~~G~~~~~s~d~G~sW  248 (334)
T PRK13684        172 AGVVRNLRRSP-DGKY-VAVSSRGNFYSTWEPGQTAWTPHQRNSSRRLQSMGFQPDGNLWMLA-RGGQIRFNDPDDLESW  248 (334)
T ss_pred             cceEEEEEECC-CCeE-EEEeCCceEEEEcCCCCCeEEEeeCCCcccceeeeEcCCCCEEEEe-cCCEEEEccCCCCCcc
Confidence            44678888887 4444 44555555443 3322222222222334568889999998876654 5676653234444444


Q ss_pred             hccccc----ccceEEEEEeeCCCEEEEEeCCCcEE
Q 021247          279 QSMTNH----TDQVWGVSFRPLGGRVVSVSDDKSIS  310 (315)
Q Consensus       279 ~~~~~~----~~~v~~~~~s~~~~~l~s~~~d~~i~  310 (315)
                      +....+    ...+.++.+.|++. +..++.+|.+.
T Consensus       249 ~~~~~~~~~~~~~l~~v~~~~~~~-~~~~G~~G~v~  283 (334)
T PRK13684        249 SKPIIPEITNGYGYLDLAYRTPGE-IWAGGGNGTLL  283 (334)
T ss_pred             ccccCCccccccceeeEEEcCCCC-EEEEcCCCeEE
Confidence            432221    23577889999776 55555666554

>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length

Probab=93.64  E-value=2.2  Score=39.06  Aligned_cols=104  Identities=14%  Similarity=0.176  Sum_probs=67.4

Q ss_pred             CCCCCEEEEecCCCcEEEEEcccceeeeeec-CCccceEEEEEcCC-CCcEEEEEeCCCeEEEEeCCC---------Cee
Q 021247          167 SPDGRRIACGSMDGTISVFDVTRAKFLHHLE-GHFMPVRSLVYSPV-DPRVLFSASDDTHVHMYDAEG---------KSL  235 (315)
Q Consensus       167 ~~~~~~l~~~s~dg~i~i~d~~~~~~~~~~~-~~~~~v~~~~~~~~-~~~~l~s~~~d~~i~~wd~~~---------~~~  235 (315)
                      +.-++..++.+....+.|||.+.+.....-. ....+|.++.|... +++.+++.|-.++|.+|-...         ...
T Consensus        38 ss~~k~a~V~~~~~~LtIWD~~~~~lE~~~~f~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~Q~R~dy~~~~p~w~~  117 (631)
T PF12234_consen   38 SSIKKIAVVDSSRSELTIWDTRSGVLEYEESFSEDDPIRDLDWTSTPDGQSILAVGFPHHVLLYTQLRYDYTNKGPSWAP  117 (631)
T ss_pred             cccCcEEEEECCCCEEEEEEcCCcEEEEeeeecCCCceeeceeeecCCCCEEEEEEcCcEEEEEEccchhhhcCCcccce
Confidence            3334444455555679999998777443322 44678999999643 677888889999999986421         112


Q ss_pred             EEE--eeccc-ccEEEEEEcCCCCeEEEEeCCCcEEEEec
Q 021247          236 VTA--MSGHA-SWVLSVDASPDGAAITTGSSDRTVKLWDL  272 (315)
Q Consensus       236 ~~~--~~~~~-~~i~~~~~~~~~~~l~s~~~d~~i~iwd~  272 (315)
                      +..  +..+. .+|.+..|-++|.+++.+  ++.+.|+|-
T Consensus       118 i~~i~i~~~T~h~Igds~Wl~~G~LvV~s--GNqlfv~dk  155 (631)
T PF12234_consen  118 IRKIDISSHTPHPIGDSIWLKDGTLVVGS--GNQLFVFDK  155 (631)
T ss_pred             eEEEEeecCCCCCccceeEecCCeEEEEe--CCEEEEECC
Confidence            222  23333 568889999999765543  456778764

This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.

>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []

Probab=93.44  E-value=1.4  Score=40.88  Aligned_cols=103  Identities=17%  Similarity=0.166  Sum_probs=69.9

Q ss_pred             CCcEEEEEeCCCeEEEEeCCC-------C----ee-E-------EEeecccccEEEEEEc--CCCCeEEEEeCCCcEEEE
Q 021247          212 DPRVLFSASDDTHVHMYDAEG-------K----SL-V-------TAMSGHASWVLSVDAS--PDGAAITTGSSDRTVKLW  270 (315)
Q Consensus       212 ~~~~l~s~~~d~~i~~wd~~~-------~----~~-~-------~~~~~~~~~i~~~~~~--~~~~~l~s~~~d~~i~iw  270 (315)
                      +...|+.+.+||.|.+|..+.       .    .. .       .....-...+++++++  ...+++|+++....|.||
T Consensus       113 ~~EVLl~c~DdG~V~~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~v~~SaWGLdIh~~~~~rlIAVSsNs~~VTVF  192 (717)
T PF08728_consen  113 GEEVLLLCTDDGDVLAYYTETIIEAIERFSEDNDSGFSRLKIKPFFHLRVGASAWGLDIHDYKKSRLIAVSSNSQEVTVF  192 (717)
T ss_pred             CeeEEEEEecCCeEEEEEHHHHHHHHHhhccccccccccccCCCCeEeecCCceeEEEEEecCcceEEEEecCCceEEEE
Confidence            557899999999999996521       0    00 0       0011123467899998  777888998888889988


Q ss_pred             ecCcc--c-eehcccccccceEEEEEeeCC-----C-EEEEEeCCCcEEEeec
Q 021247          271 DLNMR--A-AMQSMTNHTDQVWGVSFRPLG-----G-RVVSVSDDKSISLYEY  314 (315)
Q Consensus       271 d~~~~--~-~~~~~~~~~~~v~~~~~s~~~-----~-~l~s~~~d~~i~i~~~  314 (315)
                      -+...  + .......|...|-+|+|-++.     . +|++++-.|++.+|++
T Consensus       193 af~l~~~r~~~~~s~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I  245 (717)
T PF08728_consen  193 AFALVDERFYHVPSHQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKI  245 (717)
T ss_pred             EEeccccccccccccccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEE
Confidence            65431  1 111111355678899998763     2 7889999999999886

RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].

>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=92.83  E-value=1.3  Score=38.91  Aligned_cols=71  Identities=17%  Similarity=0.204  Sum_probs=47.4

Q ss_pred             cEEEEEEcCCCCeEEEEeCCCcEEEE-----ecC----cccee---hcc--------cccccceEEEEEeeCC---CEEE
Q 021247          245 WVLSVDASPDGAAITTGSSDRTVKLW-----DLN----MRAAM---QSM--------TNHTDQVWGVSFRPLG---GRVV  301 (315)
Q Consensus       245 ~i~~~~~~~~~~~l~s~~~d~~i~iw-----d~~----~~~~~---~~~--------~~~~~~v~~~~~s~~~---~~l~  301 (315)
                      .|..+..++.|..++-+|.+|.+.+.     .-+    .++..   +++        ....-.+..++|+|+.   ..|.
T Consensus       105 eV~~vl~s~~GS~VaL~G~~Gi~vMeLp~rwG~~s~~eDgk~~v~CRt~~i~~~~ftss~~ltl~Qa~WHP~S~~D~hL~  184 (741)
T KOG4460|consen  105 EVYQVLLSPTGSHVALIGIKGLMVMELPKRWGKNSEFEDGKSTVNCRTTPVAERFFTSSTSLTLKQAAWHPSSILDPHLV  184 (741)
T ss_pred             EEEEEEecCCCceEEEecCCeeEEEEchhhcCccceecCCCceEEEEeecccceeeccCCceeeeeccccCCccCCceEE
Confidence            46678889999999999999965443     211    12111   000        0111245678999985   6789


Q ss_pred             EEeCCCcEEEeecC
Q 021247          302 SVSDDKSISLYEYS  315 (315)
Q Consensus       302 s~~~d~~i~i~~~~  315 (315)
                      ....|..||||+.+
T Consensus       185 iL~sdnviRiy~lS  198 (741)
T KOG4460|consen  185 LLTSDNVIRIYSLS  198 (741)
T ss_pred             EEecCcEEEEEecC
Confidence            99999999999975

>PF15390 DUF4613: Domain of unknown function (DUF4613)

Probab=92.60  E-value=7.6  Score=35.03  Aligned_cols=119  Identities=13%  Similarity=0.255  Sum_probs=72.7

Q ss_pred             ccEEEEEECCCC----CeEEEEecCCCeEEEEecCC-----cceeee--ecCCCCCCCCCCccCCCCcceEEEEECCCCC
Q 021247          103 SEVWQMQFDPKG----TTLAVAGGGSASVKLWDTAT-----WNLIAT--LSIPRPEGLKPTDKSSSKKFVLSVAWSPDGR  171 (315)
Q Consensus       103 ~~v~~~~~~~~~----~~~~~~~~~d~~i~~~d~~~-----~~~~~~--~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~  171 (315)
                      ..|..+.|.|-+    ..+ ++-.....|.+|-+..     .+++..  ..+.++...          .-.++.|+|...
T Consensus        57 EhV~GlsW~P~~~~~~paL-LAVQHkkhVtVWqL~~s~~e~~K~l~sQtcEi~e~~pv----------LpQGCVWHPk~~  125 (671)
T PF15390_consen   57 EHVHGLSWAPPCTADTPAL-LAVQHKKHVTVWQLCPSTTERNKLLMSQTCEIREPFPV----------LPQGCVWHPKKA  125 (671)
T ss_pred             ceeeeeeecCcccCCCCce-EEEeccceEEEEEeccCccccccceeeeeeeccCCccc----------CCCcccccCCCc
Confidence            458899998853    223 3345677899998752     222221  222111111          124789999988


Q ss_pred             EEEEecCCCcEEEEEcc--cceeeeeecCCccceEEEEEcCCCCcEEEEEeCCCeEEEEeCCCC
Q 021247          172 RIACGSMDGTISVFDVT--RAKFLHHLEGHFMPVRSLVYSPVDPRVLFSASDDTHVHMYDAEGK  233 (315)
Q Consensus       172 ~l~~~s~dg~i~i~d~~--~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~  233 (315)
                      .|++-+....=.+++++  ..+....+. ..+-|.+..|.+++.+++++.+..-+-++||-..+
T Consensus       126 iL~VLT~~dvSV~~sV~~d~srVkaDi~-~~G~IhCACWT~DG~RLVVAvGSsLHSyiWd~~qK  188 (671)
T PF15390_consen  126 ILTVLTARDVSVLPSVHCDSSRVKADIK-TSGLIHCACWTKDGQRLVVAVGSSLHSYIWDSAQK  188 (671)
T ss_pred             eEEEEecCceeEeeeeeeCCceEEEecc-CCceEEEEEecCcCCEEEEEeCCeEEEEEecCchh
Confidence            88766554444556654  233344443 45678999999977677777777777889996543

>PRK10115 protease 2; Provisional

Probab=92.38  E-value=10  Score=35.85  Aligned_cols=195  Identities=11%  Similarity=0.012  Sum_probs=97.4

Q ss_pred             cceEEEEeCCCCCEEEEe-eC----CCeEEEEECCCCceeE-EeeCCcccEEEEEECCCCCeEEEEecCC-----CeEEE
Q 021247           61 LGVVSVAAHPSGIIAASA-SL----DSFVRVFDVDTNASIA-TLEASPSEVWQMQFDPKGTTLAVAGGGS-----ASVKL  129 (315)
Q Consensus        61 ~~v~~~~~~~~g~~l~s~-~~----d~~i~~w~~~~~~~~~-~~~~~~~~v~~~~~~~~~~~~~~~~~~d-----~~i~~  129 (315)
                      -.+..+.++|+|++|+-+ +.    .-.|++-|+.++..+. .+...   -..++|.+++..++++...+     ..|..
T Consensus       127 ~~l~~~~~Spdg~~la~~~d~~G~E~~~l~v~d~~tg~~l~~~i~~~---~~~~~w~~D~~~~~y~~~~~~~~~~~~v~~  203 (686)
T PRK10115        127 YTLGGMAITPDNTIMALAEDFLSRRQYGIRFRNLETGNWYPELLDNV---EPSFVWANDSWTFYYVRKHPVTLLPYQVWR  203 (686)
T ss_pred             EEEeEEEECCCCCEEEEEecCCCcEEEEEEEEECCCCCCCCccccCc---ceEEEEeeCCCEEEEEEecCCCCCCCEEEE
Confidence            346677889999977643 22    2348888998775322 22221   14589999988777765432     35677


Q ss_pred             EecCCc--ceeeeecCCCCCCCCCCccCCCCcceEEEEECCCCCEEEEec---CCCcEEEEEcc--cceeeeeecCCccc
Q 021247          130 WDTATW--NLIATLSIPRPEGLKPTDKSSSKKFVLSVAWSPDGRRIACGS---MDGTISVFDVT--RAKFLHHLEGHFMP  202 (315)
Q Consensus       130 ~d~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~s---~dg~i~i~d~~--~~~~~~~~~~~~~~  202 (315)
                      +++.+.  +....+.  ..          ..........+.++++++..+   .++.+.+++..  .+.....+......
T Consensus       204 h~lgt~~~~d~lv~~--e~----------~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~  271 (686)
T PRK10115        204 HTIGTPASQDELVYE--EK----------DDTFYVSLHKTTSKHYVVIHLASATTSEVLLLDAELADAEPFVFLPRRKDH  271 (686)
T ss_pred             EECCCChhHCeEEEe--eC----------CCCEEEEEEEcCCCCEEEEEEECCccccEEEEECcCCCCCceEEEECCCCC
Confidence            777665  2111111  10          001112333444777665433   34578888842  23322222111112


Q ss_pred             eEEEEEcCCCCcEEEEEeC---CCeEEEEeCCCCeeEEEeecc-c-ccEEEEEEcCCCCeEEEEeCCCcEEEEecC
Q 021247          203 VRSLVYSPVDPRVLFSASD---DTHVHMYDAEGKSLVTAMSGH-A-SWVLSVDASPDGAAITTGSSDRTVKLWDLN  273 (315)
Q Consensus       203 v~~~~~~~~~~~~l~s~~~---d~~i~~wd~~~~~~~~~~~~~-~-~~i~~~~~~~~~~~l~s~~~d~~i~iwd~~  273 (315)
                      ...+. +. +..+++....   ...|...++........+..+ . ..|..+.+. .+.++++...++.-+++-++
T Consensus       272 ~~~~~-~~-~~~ly~~tn~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~i~~~~~~-~~~l~~~~~~~g~~~l~~~~  344 (686)
T PRK10115        272 EYSLD-HY-QHRFYLRSNRHGKNFGLYRTRVRDEQQWEELIPPRENIMLEGFTLF-TDWLVVEERQRGLTSLRQIN  344 (686)
T ss_pred             EEEEE-eC-CCEEEEEEcCCCCCceEEEecCCCcccCeEEECCCCCCEEEEEEEE-CCEEEEEEEeCCEEEEEEEc
Confidence            22222 22 3333333322   223444444421112233333 2 357777777 44567777778876665443

>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=92.36  E-value=6.9  Score=34.75  Aligned_cols=26  Identities=27%  Similarity=0.326  Sum_probs=20.5

Q ss_pred             eEEEEECCCCCEEEEecCCCcEEEEE
Q 021247          161 VLSVAWSPDGRRIACGSMDGTISVFD  186 (315)
Q Consensus       161 i~~~~~~~~~~~l~~~s~dg~i~i~d  186 (315)
                      |..+..++.|..++-.+.+|-+.++=
T Consensus       106 V~~vl~s~~GS~VaL~G~~Gi~vMeL  131 (741)
T KOG4460|consen  106 VYQVLLSPTGSHVALIGIKGLMVMEL  131 (741)
T ss_pred             EEEEEecCCCceEEEecCCeeEEEEc
Confidence            66788899999998888888766653

>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]

Probab=92.25  E-value=0.34  Score=45.25  Aligned_cols=121  Identities=16%  Similarity=0.267  Sum_probs=71.2

Q ss_pred             cceEEEEEeecCCCCCcEEEEeeCCCcEEEEcCCCCcceeeccccccceEEE-----------EeCCCCCEEEEeeCCCe
Q 021247           15 ESVWAVTWVPATETRPALLLTGSLDETVKLWRPDDMQLERTNTGHCLGVVSV-----------AAHPSGIIAASASLDSF   83 (315)
Q Consensus        15 ~~v~~v~~~~~~~~~~~~l~sgs~d~~v~~w~~~~~~~~~~~~~h~~~v~~~-----------~~~~~g~~l~s~~~d~~   83 (315)
                      .++--|.|.|.-.. ..++..+-.+++|++.+.+... ...+.+|...+..+           ..+|||..++.+..||.
T Consensus       181 s~~~~V~wcp~~~~-~~~ic~~~~~~~i~lL~~~ra~-~~l~rsHs~~~~d~a~~~~g~~~l~~lSpDGtv~a~a~~dG~  258 (1283)
T KOG1916|consen  181 SDPQLVSWCPIAVN-KVYICYGLKGGEIRLLNINRAL-RSLFRSHSQRVTDMAFFAEGVLKLASLSPDGTVFAWAISDGS  258 (1283)
T ss_pred             CCcceeeecccccc-cceeeeccCCCceeEeeechHH-HHHHHhcCCCcccHHHHhhchhhheeeCCCCcEEEEeecCCc
Confidence            34566778886543 3567777788999888765432 24444565544433           36899999999999999


Q ss_pred             EEEEECCC-C----ceeEEeeCCc-cc-EEEEEECCCCC--------eEEEEe-cCCCeEEEEecCCccee
Q 021247           84 VRVFDVDT-N----ASIATLEASP-SE-VWQMQFDPKGT--------TLAVAG-GGSASVKLWDTATWNLI  138 (315)
Q Consensus        84 i~~w~~~~-~----~~~~~~~~~~-~~-v~~~~~~~~~~--------~~~~~~-~~d~~i~~~d~~~~~~~  138 (315)
                      ++.|.+-- +    .+....+.|. .+ +..+ ++.+..        .+.+++ ..+..+++|....++++
T Consensus       259 v~f~Qiyi~g~~~~rclhewkphd~~p~vC~l-c~~~~~~~v~i~~w~~~Itttd~nre~k~w~~a~w~Cl  328 (1283)
T KOG1916|consen  259 VGFYQIYITGKIVHRCLHEWKPHDKHPRVCWL-CHKQEILVVSIGKWVLRITTTDVNREEKFWAEAPWQCL  328 (1283)
T ss_pred             cceeeeeeeccccHhhhhccCCCCCCCceeee-eccccccCCccceeEEEEecccCCcceeEeeccchhhh
Confidence            99888642 1    2222333333 12 2222 332211        123333 33567899988776665

>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]

Probab=92.02  E-value=10  Score=35.22  Aligned_cols=184  Identities=14%  Similarity=0.257  Sum_probs=86.4

Q ss_pred             CCCeEEEEECCCCceeEEeeCCcccEEEEEECCCCCeEEEEecCCCeEEEEecCCcceeeeecCCCCCCCCCCccCCCCc
Q 021247           80 LDSFVRVFDVDTNASIATLEASPSEVWQMQFDPKGTTLAVAGGGSASVKLWDTATWNLIATLSIPRPEGLKPTDKSSSKK  159 (315)
Q Consensus        80 ~d~~i~~w~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~  159 (315)
                      .-..|+|++.. |+.+..+.....++..+.|+.+...+++  ..+|++.+|++-. +.+.....    +.+     ....
T Consensus        62 a~~~I~If~~s-G~lL~~~~w~~~~lI~mgWs~~eeLI~v--~k~g~v~Vy~~~g-e~ie~~sv----g~e-----~~~~  128 (829)
T KOG2280|consen   62 ARPYIRIFNIS-GQLLGRILWKHGELIGMGWSDDEELICV--QKDGTVHVYGLLG-EFIESNSV----GFE-----SQMS  128 (829)
T ss_pred             cceeEEEEecc-ccchHHHHhcCCCeeeecccCCceEEEE--eccceEEEeecch-hhhccccc----ccc-----cccC
Confidence            34568888864 4444444444447889999987665443  5899999999853 22211100    000     0111


Q ss_pred             ceEEEEECCCCCEEEEecCCCcEEEEE-cccceeeeeec---CCccceEEEEEcCC--CCcEEEEEeCCCeEEEEeCCC-
Q 021247          160 FVLSVAWSPDGRRIACGSMDGTISVFD-VTRAKFLHHLE---GHFMPVRSLVYSPV--DPRVLFSASDDTHVHMYDAEG-  232 (315)
Q Consensus       160 ~i~~~~~~~~~~~l~~~s~dg~i~i~d-~~~~~~~~~~~---~~~~~v~~~~~~~~--~~~~l~s~~~d~~i~~wd~~~-  232 (315)
                      .|..+.+..+|  +++-..+|.+.+-. .... .+.++.   .-..+-.+-...++  ....++-...--..+++-... 
T Consensus       129 ~I~ec~~f~~G--Vavlt~~g~v~~i~~~~~~-~~~~~~diP~~~~~~~~Wt~~~~~~~~~~ll~v~~~v~~~~~q~~~~  205 (829)
T KOG2280|consen  129 DIVECRFFHNG--VAVLTVSGQVILINGVEEP-KLRKMPDIPYNELPKSCWTVFQPHRQSTILLDVDVAVGLHICQVEES  205 (829)
T ss_pred             ceeEEEEecCc--eEEEecCCcEEEEcCCCcc-hhhhCCCCCCccCCCcceeEecCCCcceeEEeechhhhhcccceecc
Confidence            24455554444  33333455554433 2211 111111   11111111111111  111111111000011111111 


Q ss_pred             -CeeEEEeecccccEEEEEEcCCCCeEEEEeCCCcEEEEecCccceehc
Q 021247          233 -KSLVTAMSGHASWVLSVDASPDGAAITTGSSDRTVKLWDLNMRAAMQS  280 (315)
Q Consensus       233 -~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~  280 (315)
                       .+.. .+......+..+.+||+.++|+-=...|.|.+-+.+..+.+-+
T Consensus       206 ~~q~~-~~~~~~~~~~ki~VS~n~~~laLyt~~G~i~~vs~D~~~~lce  253 (829)
T KOG2280|consen  206 RVQLH-ALSWPNSSVVKISVSPNRRFLALYTETGKIWVVSIDLSQILCE  253 (829)
T ss_pred             ccccc-ccCCCCceEEEEEEcCCcceEEEEecCCcEEEEecchhhhhhc
Confidence             1111 1111234577889999999999999999998887766554433

>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118

Probab=91.82  E-value=6.4  Score=32.45  Aligned_cols=221  Identities=14%  Similarity=0.187  Sum_probs=123.4

Q ss_pred             EEEEeCCCCCEEEEeeCCCeEEEEECCC------C-ceeEEeeC-----CcccEEEEEECCCCCe-----------EEEE
Q 021247           64 VSVAAHPSGIIAASASLDSFVRVFDVDT------N-ASIATLEA-----SPSEVWQMQFDPKGTT-----------LAVA  120 (315)
Q Consensus        64 ~~~~~~~~g~~l~s~~~d~~i~~w~~~~------~-~~~~~~~~-----~~~~v~~~~~~~~~~~-----------~~~~  120 (315)
                      .-|+++|.+.+-++...-+...+||.+.      . ..+.++..     .+.....+.|+.....           .++.
T Consensus        26 WGia~~p~~~~WVadngT~~~TlYdg~~~~~~g~~~~L~vtiP~~~~~~~~~~PTGiVfN~~~~F~vt~~g~~~~a~Fif  105 (336)
T TIGR03118        26 WGLSYRPGGPFWVANTGTGTATLYVGNPDTQPLVQDPLVVVIPAPPPLAAEGTPTGQVFNGSDTFVVSGEGITGPSRFLF  105 (336)
T ss_pred             ceeEecCCCCEEEecCCcceEEeecCCcccccCCccceEEEecCCCCCCCCCCccEEEEeCCCceEEcCCCcccceeEEE
Confidence            5688999988878777778899999871      1 22233332     1234566777644321           1244


Q ss_pred             ecCCCeEEEEecCCcce---eeeecCCCCCCCCCCccCCCCcceEEEEECC--CCCEEE-EecCCCcEEEEEcccceee-
Q 021247          121 GGGSASVKLWDTATWNL---IATLSIPRPEGLKPTDKSSSKKFVLSVAWSP--DGRRIA-CGSMDGTISVFDVTRAKFL-  193 (315)
Q Consensus       121 ~~~d~~i~~~d~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~--~~~~l~-~~s~dg~i~i~d~~~~~~~-  193 (315)
                      +++||+|.-|.-.-...   ...+..+..         ........+++..  .+.+|. +--..++|.+||-.-.+.. 
T Consensus       106 ~tEdGTisaW~p~v~~t~~~~~~~~~d~s---------~~gavYkGLAi~~~~~~~~LYaadF~~g~IDVFd~~f~~~~~  176 (336)
T TIGR03118       106 VTEDGTLSGWAPALGTTRMTRAEIVVDAS---------QQGNVYKGLAVGPTGGGDYLYAANFRQGRIDVFKGSFRPPPL  176 (336)
T ss_pred             EeCCceEEeecCcCCcccccccEEEEccC---------CCcceeeeeEEeecCCCceEEEeccCCCceEEecCccccccC
Confidence            56888998887432211   011111111         0112234566554  345554 4456889999985322211 


Q ss_pred             -eeecCC-----cc-----------ceEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCeeEEEe--ecccccEEEEEEcC-
Q 021247          194 -HHLEGH-----FM-----------PVRSLVYSPVDPRVLFSASDDTHVHMYDAEGKSLVTAM--SGHASWVLSVDASP-  253 (315)
Q Consensus       194 -~~~~~~-----~~-----------~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~--~~~~~~i~~~~~~~-  253 (315)
                       ..+...     -.           -|+-..-.+ +.+.=+.+-.-|.|-+||.... +++++  .+.-...+.++..| 
T Consensus       177 ~g~F~DP~iPagyAPFnIqnig~~lyVtYA~qd~-~~~d~v~G~G~G~VdvFd~~G~-l~~r~as~g~LNaPWG~a~APa  254 (336)
T TIGR03118       177 PGSFIDPALPAGYAPFNVQNLGGTLYVTYAQQDA-DRNDEVAGAGLGYVNVFTLNGQ-LLRRVASSGRLNAPWGLAIAPE  254 (336)
T ss_pred             CCCccCCCCCCCCCCcceEEECCeEEEEEEecCC-cccccccCCCcceEEEEcCCCc-EEEEeccCCcccCCceeeeChh
Confidence             001000     00           011111111 1122234444578999998765 44433  34455667788766 


Q ss_pred             -----CCCeEEEEeCCCcEEEEecCccceehcccccc------cceEEEEEee
Q 021247          254 -----DGAAITTGSSDRTVKLWDLNMRAAMQSMTNHT------DQVWGVSFRP  295 (315)
Q Consensus       254 -----~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~------~~v~~~~~s~  295 (315)
                           .+.+|+---.||+|..||..+++.+..+....      +.+|+++|-.
T Consensus       255 ~FG~~sg~lLVGNFGDG~InaFD~~sG~~~g~L~~~~G~pi~i~GLWgL~fGn  307 (336)
T TIGR03118       255 SFGSLSGALLVGNFGDGTINAYDPQSGAQLGQLLDPDNHPVKVDGLWSLTFGN  307 (336)
T ss_pred             hhCCCCCCeEEeecCCceeEEecCCCCceeeeecCCCCCeEEecCeEEeeeCC
Confidence                 46788877789999999999888776665433      4588888876

This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.

>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus

Probab=91.72  E-value=3.4  Score=35.96  Aligned_cols=83  Identities=14%  Similarity=0.148  Sum_probs=54.7

Q ss_pred             cceEEEEeCCCCCEEEEeeCCCeEEEEECCCCceeEEeeCCccc-EEEEE-ECCC----------------CCeEEEEec
Q 021247           61 LGVVSVAAHPSGIIAASASLDSFVRVFDVDTNASIATLEASPSE-VWQMQ-FDPK----------------GTTLAVAGG  122 (315)
Q Consensus        61 ~~v~~~~~~~~g~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~-v~~~~-~~~~----------------~~~~~~~~~  122 (315)
                      ..+.++..+|++.+.++...=|.|.++|+.++..+...++-.+. +--+. ..+.                ..++++-..
T Consensus       308 R~~~~i~~sP~~~laA~tDslGRV~LiD~~~~~vvrmWKGYRdAqc~wi~~~~~~~~~~~~~~~~~~~~~~~l~LvIyap  387 (415)
T PF14655_consen  308 REGESICLSPSGRLAAVTDSLGRVLLIDVARGIVVRMWKGYRDAQCGWIEVPEEGDRDRSNSNSPKSSSRFALFLVIYAP  387 (415)
T ss_pred             ceEEEEEECCCCCEEEEEcCCCcEEEEECCCChhhhhhccCccceEEEEEeecccccccccccccCCCCcceEEEEEEec
Confidence            45788999999999998888899999999988766555443221 10000 0000                123455566


Q ss_pred             CCCeEEEEecCCcceeeeecC
Q 021247          123 GSASVKLWDTATWNLIATLSI  143 (315)
Q Consensus       123 ~d~~i~~~d~~~~~~~~~~~~  143 (315)
                      .-|.|-||.++++..+..+..
T Consensus       388 rRg~lEvW~~~~g~Rv~a~~v  408 (415)
T PF14655_consen  388 RRGILEVWSMRQGPRVAAFNV  408 (415)
T ss_pred             cCCeEEEEecCCCCEEEEEEe
Confidence            788999999988766655543

>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus

Probab=91.63  E-value=3  Score=36.30  Aligned_cols=42  Identities=26%  Similarity=0.301  Sum_probs=33.9

Q ss_pred             cceEEEEECCCCCEEEEecCCCcEEEEEcccceeeeeecCCc
Q 021247          159 KFVLSVAWSPDGRRIACGSMDGTISVFDVTRAKFLHHLEGHF  200 (315)
Q Consensus       159 ~~i~~~~~~~~~~~l~~~s~dg~i~i~d~~~~~~~~~~~~~~  200 (315)
                      ..+.+++.+|.+++.++.-.-|+|.++|+.++..+.-+++..
T Consensus       308 R~~~~i~~sP~~~laA~tDslGRV~LiD~~~~~vvrmWKGYR  349 (415)
T PF14655_consen  308 REGESICLSPSGRLAAVTDSLGRVLLIDVARGIVVRMWKGYR  349 (415)
T ss_pred             ceEEEEEECCCCCEEEEEcCCCcEEEEECCCChhhhhhccCc
Confidence            447789999999888887777899999999887776666543

>PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide

Probab=91.52  E-value=0.61  Score=25.04  Aligned_cols=30  Identities=20%  Similarity=0.276  Sum_probs=19.7

Q ss_pred             ccccceEEEEEeeCCCEEEEEe-CC--CcEEEe
Q 021247          283 NHTDQVWGVSFRPLGGRVVSVS-DD--KSISLY  312 (315)
Q Consensus       283 ~~~~~v~~~~~s~~~~~l~s~~-~d--~~i~i~  312 (315)
                      .....-....|||||++|+-++ .+  |.-.||
T Consensus         6 ~~~~~~~~p~~SpDGk~i~f~s~~~~~g~~diy   38 (39)
T PF07676_consen    6 NSPGDDGSPAWSPDGKYIYFTSNRNDRGSFDIY   38 (39)
T ss_dssp             -SSSSEEEEEE-TTSSEEEEEEECT--SSEEEE
T ss_pred             cCCccccCEEEecCCCEEEEEecCCCCCCcCEE
Confidence            3344567789999999987544 44  677766

WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A ....

>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family

Probab=91.37  E-value=14  Score=35.33  Aligned_cols=70  Identities=11%  Similarity=0.062  Sum_probs=45.7

Q ss_pred             CCEEEEeeCCCeEEEEECCCCceeEEeeCCccc--------EEEEEECC----------------CCCeEEEEecCCCeE
Q 021247           72 GIIAASASLDSFVRVFDVDTNASIATLEASPSE--------VWQMQFDP----------------KGTTLAVAGGGSASV  127 (315)
Q Consensus        72 g~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~--------v~~~~~~~----------------~~~~~~~~~~~d~~i  127 (315)
                      +..+..++.++.|.-.|..+++.+..++.....        +..+.+-.                .+..+ +.+..|+.+
T Consensus       194 gg~lYv~t~~~~V~ALDa~TGk~lW~~d~~~~~~~~~~~~~cRGvay~~~p~~~~~~~~~~~p~~~~~rV-~~~T~Dg~L  272 (764)
T TIGR03074       194 GDTLYLCTPHNKVIALDAATGKEKWKFDPKLKTEAGRQHQTCRGVSYYDAPAAAAGPAAPAAPADCARRI-ILPTSDARL  272 (764)
T ss_pred             CCEEEEECCCCeEEEEECCCCcEEEEEcCCCCcccccccccccceEEecCCcccccccccccccccCCEE-EEecCCCeE
Confidence            445556677888999999999888776543211        11222211                12234 456779999


Q ss_pred             EEEecCCcceeeeec
Q 021247          128 KLWDTATWNLIATLS  142 (315)
Q Consensus       128 ~~~d~~~~~~~~~~~  142 (315)
                      .-.|.++++.+..+.
T Consensus       273 iALDA~TGk~~W~fg  287 (764)
T TIGR03074       273 IALDADTGKLCEDFG  287 (764)
T ss_pred             EEEECCCCCEEEEec
Confidence            999999999887663

This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.

>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain

Probab=91.29  E-value=8.9  Score=33.03  Aligned_cols=100  Identities=18%  Similarity=0.268  Sum_probs=53.4

Q ss_pred             eEEEEECCCCCEEEEecCCCcEEEEEccc-------ce-eeeeecC----CccceEEEEEcCCCCcEEEEEeCC------
Q 021247          161 VLSVAWSPDGRRIACGSMDGTISVFDVTR-------AK-FLHHLEG----HFMPVRSLVYSPVDPRVLFSASDD------  222 (315)
Q Consensus       161 i~~~~~~~~~~~l~~~s~dg~i~i~d~~~-------~~-~~~~~~~----~~~~v~~~~~~~~~~~~l~s~~~d------  222 (315)
                      ...+++.+++ .++ +......++.|...       .+ .+..+..    +......+.|.| ++.+.++-+..      
T Consensus        74 p~Gi~~~~~G-lyV-~~~~~i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gp-DG~LYv~~G~~~~~~~~  150 (367)
T TIGR02604        74 VTGLAVAVGG-VYV-ATPPDILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGP-DGWLYFNHGNTLASKVT  150 (367)
T ss_pred             ccceeEecCC-EEE-eCCCeEEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECC-CCCEEEecccCCCceec
Confidence            4688888888 444 44443333434421       11 1222222    123467888988 55666554421      


Q ss_pred             -------------CeEEEEeCCCCeeEEEeecccccEEEEEEcCCCCeEEEEeCC
Q 021247          223 -------------THVHMYDAEGKSLVTAMSGHASWVLSVDASPDGAAITTGSSD  264 (315)
Q Consensus       223 -------------~~i~~wd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~d  264 (315)
                                   +.|..++..+++......+ ......++|+|+|+++++-..+
T Consensus       151 ~~~~~~~~~~~~~g~i~r~~pdg~~~e~~a~G-~rnp~Gl~~d~~G~l~~tdn~~  204 (367)
T TIGR02604       151 RPGTSDESRQGLGGGLFRYNPDGGKLRVVAHG-FQNPYGHSVDSWGDVFFCDNDD  204 (367)
T ss_pred             cCCCccCcccccCceEEEEecCCCeEEEEecC-cCCCccceECCCCCEEEEccCC
Confidence                         4566666665543222223 2335689999999887764433

All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.

>KOG2247 consensus WD40 repeat-containing protein [General function prediction only]

Probab=91.17  E-value=0.025  Score=48.60  Aligned_cols=140  Identities=11%  Similarity=0.176  Sum_probs=94.7

Q ss_pred             EEEECCCCCEEEEecCCCcEEEEEcccceeeeeecCCccceEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCeeEE-Eee-
Q 021247          163 SVAWSPDGRRIACGSMDGTISVFDVTRAKFLHHLEGHFMPVRSLVYSPVDPRVLFSASDDTHVHMYDAEGKSLVT-AMS-  240 (315)
Q Consensus       163 ~~~~~~~~~~l~~~s~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~-~~~-  240 (315)
                      ...|-|++..++.+..+..+..||-....... .. ..+....++|...++..++.+-..+.+.+||..+..-.. ... 
T Consensus        39 ~~~w~~e~~nlavaca~tiv~~YD~agq~~le-~n-~tg~aldm~wDkegdvlavlAek~~piylwd~n~eytqqLE~gg  116 (615)
T KOG2247|consen   39 IHRWRPEGHNLAVACANTIVIYYDKAGQVILE-LN-PTGKALDMAWDKEGDVLAVLAEKTGPIYLWDVNSEYTQQLESGG  116 (615)
T ss_pred             eeeEecCCCceehhhhhhHHHhhhhhcceecc-cC-CchhHhhhhhccccchhhhhhhcCCCeeechhhhhhHHHHhccC
Confidence            56777887778888888889999954332222 11 223445677777666677777788899999987542111 111 


Q ss_pred             cccccEEEEEEcCCCCeEEEEeCCCcEEEEecCccceehcccccccceEEEEEeeCCCEEEEEeCCC
Q 021247          241 GHASWVLSVDASPDGAAITTGSSDRTVKLWDLNMRAAMQSMTNHTDQVWGVSFRPLGGRVVSVSDDK  307 (315)
Q Consensus       241 ~~~~~i~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~  307 (315)
                      .|....  +.|++....++.+-..|.+.|++....+..-.+-.|...++..++.+-+ +++.++.|.
T Consensus       117 ~~s~sl--l~wsKg~~el~ig~~~gn~viynhgtsR~iiv~Gkh~RRgtq~av~lEd-~vil~dcd~  180 (615)
T KOG2247|consen  117 TSSKSL--LAWSKGTPELVIGNNAGNIVIYNHGTSRRIIVMGKHQRRGTQIAVTLED-YVILCDCDN  180 (615)
T ss_pred             cchHHH--HhhccCCccccccccccceEEEeccchhhhhhhcccccceeEEEecccc-eeeecCcHH
Confidence            122222  5688888888888889999999988766666554588899999999865 455555544

>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]

Probab=90.88  E-value=0.27  Score=45.86  Aligned_cols=134  Identities=16%  Similarity=0.163  Sum_probs=77.3

Q ss_pred             CCCcEEEEEccccee-eeeecCCccceEEEEEcCCCCcEEEEEeCCCeEEEEeCC--CCeeEEEe-----ecccccEEEE
Q 021247          178 MDGTISVFDVTRAKF-LHHLEGHFMPVRSLVYSPVDPRVLFSASDDTHVHMYDAE--GKSLVTAM-----SGHASWVLSV  249 (315)
Q Consensus       178 ~dg~i~i~d~~~~~~-~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~--~~~~~~~~-----~~~~~~i~~~  249 (315)
                      ..+.+++-+..+... ..-.++..+.+..+.|-..+...+.  -.-|.+.+||..  .+++...+     ..-...+.-+
T Consensus       109 ~~~~vrvaN~~~sm~~~~l~kgf~G~v~dl~fah~~~pk~~--~~vg~lfVy~vd~l~G~iq~~l~v~~~~p~gs~~~~V  186 (1283)
T KOG1916|consen  109 MENGVRVANQEPSMRHNELAKGFPGGVGDLQFAHTKCPKGR--RLVGELFVYDVDVLQGEIQPQLEVTPITPYGSDPQLV  186 (1283)
T ss_pred             hhhhhhhccCcchhHHHHHHhcCCCCcccccccccCChHHH--HHhhhhheeehHhhccccccceEEeecCcCCCCccee
Confidence            445666666543321 1223445566677777543333332  334678889864  23322222     2222333444


Q ss_pred             EEcC---CCCeEEEEeCCCcEEEEecCccceehcccccccceEEE-----------EEeeCCCEEEEEeCCCcEEEeec
Q 021247          250 DASP---DGAAITTGSSDRTVKLWDLNMRAAMQSMTNHTDQVWGV-----------SFRPLGGRVVSVSDDKSISLYEY  314 (315)
Q Consensus       250 ~~~~---~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~-----------~~s~~~~~l~s~~~d~~i~i~~~  314 (315)
                      .|.|   +..++..+-.++.|++...+.... ..+..|+..+..+           .+||||..++..+.||.++.|..
T Consensus       187 ~wcp~~~~~~~ic~~~~~~~i~lL~~~ra~~-~l~rsHs~~~~d~a~~~~g~~~l~~lSpDGtv~a~a~~dG~v~f~Qi  264 (1283)
T KOG1916|consen  187 SWCPIAVNKVYICYGLKGGEIRLLNINRALR-SLFRSHSQRVTDMAFFAEGVLKLASLSPDGTVFAWAISDGSVGFYQI  264 (1283)
T ss_pred             eecccccccceeeeccCCCceeEeeechHHH-HHHHhcCCCcccHHHHhhchhhheeeCCCCcEEEEeecCCccceeee
Confidence            5544   556777777888888877654322 3334465544432           48999999999999999999875

>PRK14131 N-acetylneuraminic acid mutarotase; Provisional

Probab=89.94  E-value=12  Score=32.34  Aligned_cols=13  Identities=8%  Similarity=0.307  Sum_probs=10.0

Q ss_pred             cEEEEEcccceee
Q 021247          181 TISVFDVTRAKFL  193 (315)
Q Consensus       181 ~i~i~d~~~~~~~  193 (315)
                      .+.+||..+++..
T Consensus       190 ~v~~YD~~t~~W~  202 (376)
T PRK14131        190 EVLSYDPSTNQWK  202 (376)
T ss_pred             eEEEEECCCCeee
Confidence            5888998877654

>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin

Probab=89.67  E-value=3.4  Score=32.58  Aligned_cols=63  Identities=11%  Similarity=0.157  Sum_probs=47.4

Q ss_pred             CCcEEEEEeCCCeEEEEeCCCCeeEEEe-------e-------cccccEEEEEEcCCCCeEEEEeCCCcEEEEecCcc
Q 021247          212 DPRVLFSASDDTHVHMYDAEGKSLVTAM-------S-------GHASWVLSVDASPDGAAITTGSSDRTVKLWDLNMR  275 (315)
Q Consensus       212 ~~~~l~s~~~d~~i~~wd~~~~~~~~~~-------~-------~~~~~i~~~~~~~~~~~l~s~~~d~~i~iwd~~~~  275 (315)
                      .+.++++-+.+|.+++||++.++.+...       .       .....|..+.++.+|.-+++-+ +|..+.|+.+.+
T Consensus        21 ~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~ls-ng~~y~y~~~L~   97 (219)
T PF07569_consen   21 NGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVTLS-NGDSYSYSPDLG   97 (219)
T ss_pred             CCCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCCEEEEEe-CCCEEEeccccc
Confidence            4668999999999999999887654321       1       2456688899998888777654 578899987654

These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus

>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat

Probab=89.51  E-value=2.1  Score=23.09  Aligned_cols=32  Identities=47%  Similarity=0.664  Sum_probs=25.3

Q ss_pred             CCCCeEEEEecCCCeEEEEecCCcceeeeecC
Q 021247          112 PKGTTLAVAGGGSASVKLWDTATWNLIATLSI  143 (315)
Q Consensus       112 ~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~  143 (315)
                      |+++.++++...+++|.++|..+++.+..+..
T Consensus         1 pd~~~lyv~~~~~~~v~~id~~~~~~~~~i~v   32 (42)
T TIGR02276         1 PDGTKLYVTNSGSNTVSVIDTATNKVIATIPV   32 (42)
T ss_pred             CCCCEEEEEeCCCCEEEEEECCCCeEEEEEEC
Confidence            56777888887889999999988777766644

This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).

>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases

Probab=89.04  E-value=13  Score=31.49  Aligned_cols=244  Identities=14%  Similarity=0.190  Sum_probs=112.9

Q ss_pred             ceEEEEEeecCCCCCcEEEEeeCCCcEEEEcCCCCc--ceee----ccccccceEEEEeCCC----CCEEEEeeCC----
Q 021247           16 SVWAVTWVPATETRPALLLTGSLDETVKLWRPDDMQ--LERT----NTGHCLGVVSVAAHPS----GIIAASASLD----   81 (315)
Q Consensus        16 ~v~~v~~~~~~~~~~~~l~sgs~d~~v~~w~~~~~~--~~~~----~~~h~~~v~~~~~~~~----g~~l~s~~~d----   81 (315)
                      ..++++|.|++.     ++.+-..|.|++++.+...  ....    ......+...++++|+    +.+.++.+..    
T Consensus         3 ~P~~~a~~pdG~-----l~v~e~~G~i~~~~~~g~~~~~v~~~~~v~~~~~~gllgia~~p~f~~n~~lYv~~t~~~~~~   77 (331)
T PF07995_consen    3 NPRSMAFLPDGR-----LLVAERSGRIWVVDKDGSLKTPVADLPEVFADGERGLLGIAFHPDFASNGYLYVYYTNADEDG   77 (331)
T ss_dssp             SEEEEEEETTSC-----EEEEETTTEEEEEETTTEECEEEEE-TTTBTSTTBSEEEEEE-TTCCCC-EEEEEEEEE-TSS
T ss_pred             CceEEEEeCCCc-----EEEEeCCceEEEEeCCCcCcceecccccccccccCCcccceeccccCCCCEEEEEEEcccCCC
Confidence            568999999864     5556779999999843322  1111    1234457899999994    5444444421    


Q ss_pred             ----CeEEEEECCCC--c-----ee-EEeeC---CcccEEEEEECCCCCeEEEEecCCCe---EEEEecCCcceeeeecC
Q 021247           82 ----SFVRVFDVDTN--A-----SI-ATLEA---SPSEVWQMQFDPKGTTLAVAGGGSAS---VKLWDTATWNLIATLSI  143 (315)
Q Consensus        82 ----~~i~~w~~~~~--~-----~~-~~~~~---~~~~v~~~~~~~~~~~~~~~~~~d~~---i~~~d~~~~~~~~~~~~  143 (315)
                          ..|.-|....+  .     .+ .....   .......+.|.|++.. +++.++.+.   ..--+...++.+. +..
T Consensus        78 ~~~~~~v~r~~~~~~~~~~~~~~~l~~~~p~~~~~~H~g~~l~fgpDG~L-Yvs~G~~~~~~~~~~~~~~~G~ilr-i~~  155 (331)
T PF07995_consen   78 GDNDNRVVRFTLSDGDGDLSSEEVLVTGLPDTSSGNHNGGGLAFGPDGKL-YVSVGDGGNDDNAQDPNSLRGKILR-IDP  155 (331)
T ss_dssp             SSEEEEEEEEEEETTSCEEEEEEEEEEEEES-CSSSS-EEEEEE-TTSEE-EEEEB-TTTGGGGCSTTSSTTEEEE-EET
T ss_pred             CCcceeeEEEeccCCccccccceEEEEEeCCCCCCCCCCccccCCCCCcE-EEEeCCCCCcccccccccccceEEE-ecc
Confidence                23444444433  1     11 11121   1234567999999854 444433322   0000000122211 111


Q ss_pred             CCC--CCCCCCc---------cCCCCcceEEEEECCC-CCEEEE-ecCCCcEEEEEcccce-------------------
Q 021247          144 PRP--EGLKPTD---------KSSSKKFVLSVAWSPD-GRRIAC-GSMDGTISVFDVTRAK-------------------  191 (315)
Q Consensus       144 ~~~--~~~~~~~---------~~~~~~~i~~~~~~~~-~~~l~~-~s~dg~i~i~d~~~~~-------------------  191 (315)
                      ...  ...+...         ..+.+ -...++|+|. |+++++ -+.++.=.+--+..+.                   
T Consensus       156 dG~~p~dnP~~~~~~~~~~i~A~GlR-N~~~~~~d~~tg~l~~~d~G~~~~dein~i~~G~nYGWP~~~~~~~~~~~~~~  234 (331)
T PF07995_consen  156 DGSIPADNPFVGDDGADSEIYAYGLR-NPFGLAFDPNTGRLWAADNGPDGWDEINRIEPGGNYGWPYCEGGPKYSGPPIG  234 (331)
T ss_dssp             TSSB-TTSTTTTSTTSTTTEEEE--S-EEEEEEEETTTTEEEEEEE-SSSSEEEEEE-TT-B--TTTBSSSCSTTSS-EC
T ss_pred             cCcCCCCCccccCCCceEEEEEeCCC-ccccEEEECCCCcEEEEccCCCCCcEEEEeccCCcCCCCCCcCCCCCCCCccc
Confidence            100  0000000         01111 1357999998 665543 2333322222121111                   


Q ss_pred             ----------eeeeecCCccceEEEEEcC------CCCcEEEEEeCCCeEEEEeCCCC-eeEE--E-eecccccEEEEEE
Q 021247          192 ----------FLHHLEGHFMPVRSLVYSP------VDPRVLFSASDDTHVHMYDAEGK-SLVT--A-MSGHASWVLSVDA  251 (315)
Q Consensus       192 ----------~~~~~~~~~~~v~~~~~~~------~~~~~l~s~~~d~~i~~wd~~~~-~~~~--~-~~~~~~~i~~~~~  251 (315)
                                +...+..| ..+..+.|-+      ..+.++++.-..+.|....++.. ....  . +......+..+++
T Consensus       235 ~~~~~~~~~~P~~~~~~~-~ap~G~~~y~g~~fp~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~r~~~v~~  313 (331)
T PF07995_consen  235 DAPSCPGFVPPVFAYPPH-SAPTGIIFYRGSAFPEYRGDLFVADYGGGRIWRLDLDEDGSVTEEEEFLGGFGGRPRDVAQ  313 (331)
T ss_dssp             TGSS-TTS---SEEETTT---EEEEEEE-SSSSGGGTTEEEEEETTTTEEEEEEEETTEEEEEEEEECTTSSS-EEEEEE
T ss_pred             cccCCCCcCccceeecCc-cccCceEEECCccCccccCcEEEecCCCCEEEEEeeecCCCccceEEccccCCCCceEEEE
Confidence                      11112222 3455566542      13445666555677777776533 2221  1 1233447899999


Q ss_pred             cCCCCeEEEEeCCCcEE
Q 021247          252 SPDGAAITTGSSDRTVK  268 (315)
Q Consensus       252 ~~~~~~l~s~~~d~~i~  268 (315)
                      .|||.+.++-..+|.|.
T Consensus       314 ~pDG~Lyv~~d~~G~iy  330 (331)
T PF07995_consen  314 GPDGALYVSDDSDGKIY  330 (331)
T ss_dssp             ETTSEEEEEE-TTTTEE
T ss_pred             cCCCeEEEEECCCCeEe
Confidence            99999888888888874

The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....

>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=88.65  E-value=13  Score=36.99  Aligned_cols=135  Identities=13%  Similarity=0.218  Sum_probs=78.4

Q ss_pred             CCCcEEEEEcccceeeeeecCCccceEEEEEcCCCC-------cEEEEEeCCCeEEEEeC----CCCee---E--EEeec
Q 021247          178 MDGTISVFDVTRAKFLHHLEGHFMPVRSLVYSPVDP-------RVLFSASDDTHVHMYDA----EGKSL---V--TAMSG  241 (315)
Q Consensus       178 ~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~-------~~l~s~~~d~~i~~wd~----~~~~~---~--~~~~~  241 (315)
                      .|+.+.+|+.+++.....+.+-...|..+......+       ++++.-+.--.|.++-.    .+...   .  ..+..
T Consensus        97 iDn~L~lWny~~~~e~~~~d~~shtIl~V~LvkPkpgvFv~~IqhlLvvaT~~ei~ilgV~~~~~~~~~~~f~~~~~i~~  176 (1311)
T KOG1900|consen   97 IDNNLFLWNYESDNELAEYDGLSHTILKVGLVKPKPGVFVPEIQHLLVVATPVEIVILGVSFDEFTGELSIFNTSFKISV  176 (1311)
T ss_pred             eCCeEEEEEcCCCCccccccchhhhheeeeeecCCCCcchhhhheeEEecccceEEEEEEEeccccCcccccccceeeec
Confidence            678999999988766666655555555554432122       22222222223444322    11111   0  11223


Q ss_pred             ccccEEEEEEcCCCCeEEEEeCCCcEEEEecCc----c---c-e----------------ehccc-ccccceEEEEEeeC
Q 021247          242 HASWVLSVDASPDGAAITTGSSDRTVKLWDLNM----R---A-A----------------MQSMT-NHTDQVWGVSFRPL  296 (315)
Q Consensus       242 ~~~~i~~~~~~~~~~~l~s~~~d~~i~iwd~~~----~---~-~----------------~~~~~-~~~~~v~~~~~s~~  296 (315)
                      ....|+++....+|+++.+|- ||  .+|.+..    +   + +                +..+. .+.++|..++....
T Consensus       177 dg~~V~~I~~t~nGRIF~~G~-dg--~lyEl~Yq~~~gWf~~rc~Kiclt~s~ls~lvPs~~~~~~~~~dpI~qi~ID~S  253 (1311)
T KOG1900|consen  177 DGVSVNCITYTENGRIFFAGR-DG--NLYELVYQAEDGWFGSRCRKICLTKSVLSSLVPSLLSVPGSSKDPIRQITIDNS  253 (1311)
T ss_pred             CCceEEEEEeccCCcEEEeec-CC--CEEEEEEeccCchhhcccccccCchhHHHHhhhhhhcCCCCCCCcceeeEeccc
Confidence            355678888788899877654 55  4454421    0   0 0                01123 45678999998877


Q ss_pred             CCEEEEEeCCCcEEEeecC
Q 021247          297 GGRVVSVSDDKSISLYEYS  315 (315)
Q Consensus       297 ~~~l~s~~~d~~i~i~~~~  315 (315)
                      -+.+.+-+..++|++|+++
T Consensus       254 R~IlY~lsek~~v~~Y~i~  272 (1311)
T KOG1900|consen  254 RNILYVLSEKGTVSAYDIG  272 (1311)
T ss_pred             cceeeeeccCceEEEEEcc
Confidence            7788999999999999974

>PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates

Probab=88.47  E-value=3.2  Score=37.88  Aligned_cols=39  Identities=21%  Similarity=0.315  Sum_probs=29.3

Q ss_pred             ceEEEEeCC----CCCEEEEeeCCCeEEEEECCCCceeEEeeC
Q 021247           62 GVVSVAAHP----SGIIAASASLDSFVRVFDVDTNASIATLEA  100 (315)
Q Consensus        62 ~v~~~~~~~----~g~~l~s~~~d~~i~~w~~~~~~~~~~~~~  100 (315)
                      .+..+.++.    +..++++.+.|+++|+||+.+++++.+...
T Consensus       216 ~~~~~~~~~~~~~~~~~l~tl~~D~~LRiW~l~t~~~~~~~~~  258 (547)
T PF11715_consen  216 VAASLAVSSSEINDDTFLFTLSRDHTLRIWSLETGQCLATIDL  258 (547)
T ss_dssp             -EEEEEE-----ETTTEEEEEETTSEEEEEETTTTCEEEEEET
T ss_pred             ccceEEEecceeCCCCEEEEEeCCCeEEEEECCCCeEEEEecc
Confidence            355566665    667899999999999999999999766543

The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A.

>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]

Probab=88.23  E-value=22  Score=33.19  Aligned_cols=179  Identities=16%  Similarity=0.218  Sum_probs=88.8

Q ss_pred             ccccceEEEEEeecCCCCCcEEEEeeCCCcEEEEcCCCCcceeec---cccccceEEEEeCCCCCEEEEeeCCCeEEEEE
Q 021247           12 AHEESVWAVTWVPATETRPALLLTGSLDETVKLWRPDDMQLERTN---TGHCLGVVSVAAHPSGIIAASASLDSFVRVFD   88 (315)
Q Consensus        12 ~h~~~v~~v~~~~~~~~~~~~l~sgs~d~~v~~w~~~~~~~~~~~---~~h~~~v~~~~~~~~g~~l~s~~~d~~i~~w~   88 (315)
                      .|. ++-.+.|+....     |+.-..||++.+|+.-........   ......|..+.+..+|-.+++.+  |.+.+-+
T Consensus        82 ~~~-~lI~mgWs~~ee-----LI~v~k~g~v~Vy~~~ge~ie~~svg~e~~~~~I~ec~~f~~GVavlt~~--g~v~~i~  153 (829)
T KOG2280|consen   82 KHG-ELIGMGWSDDEE-----LICVQKDGTVHVYGLLGEFIESNSVGFESQMSDIVECRFFHNGVAVLTVS--GQVILIN  153 (829)
T ss_pred             cCC-CeeeecccCCce-----EEEEeccceEEEeecchhhhcccccccccccCceeEEEEecCceEEEecC--CcEEEEc
Confidence            444 777899987664     788899999999987432221111   11223466666666776666553  4555444


Q ss_pred             CCCCceeEEeeCCc-----ccEEEEEECCCCCeEEEEecCCCeEEEEecCCcceeeeecCCCCCCCCCCccCCCCcceEE
Q 021247           89 VDTNASIATLEASP-----SEVWQMQFDPKGTTLAVAGGGSASVKLWDTATWNLIATLSIPRPEGLKPTDKSSSKKFVLS  163 (315)
Q Consensus        89 ~~~~~~~~~~~~~~-----~~v~~~~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~  163 (315)
                      -.....+.....-+     ...|.+--.+....+++.-  +-.       -+..+.........   ..........+..
T Consensus       154 ~~~~~~~~~~~diP~~~~~~~~Wt~~~~~~~~~~ll~v--~~~-------v~~~~~q~~~~~~q---~~~~~~~~~~~~k  221 (829)
T KOG2280|consen  154 GVEEPKLRKMPDIPYNELPKSCWTVFQPHRQSTILLDV--DVA-------VGLHICQVEESRVQ---LHALSWPNSSVVK  221 (829)
T ss_pred             CCCcchhhhCCCCCCccCCCcceeEecCCCcceeEEee--chh-------hhhcccceeccccc---ccccCCCCceEEE
Confidence            33322222322211     1233322221112221110  000       00000000000000   0000111234778


Q ss_pred             EEECCCCCEEEEecCCCcEEEEEcccceeeeeecC-CccceEEEEEcC
Q 021247          164 VAWSPDGRRIACGSMDGTISVFDVTRAKFLHHLEG-HFMPVRSLVYSP  210 (315)
Q Consensus       164 ~~~~~~~~~l~~~s~dg~i~i~d~~~~~~~~~~~~-~~~~v~~~~~~~  210 (315)
                      +..+|+.++|+--+..|.|.+-+....+....+.. ...+...+.|..
T Consensus       222 i~VS~n~~~laLyt~~G~i~~vs~D~~~~lce~~~~~~~~p~qm~Wcg  269 (829)
T KOG2280|consen  222 ISVSPNRRFLALYTETGKIWVVSIDLSQILCEFNCTDHDPPKQMAWCG  269 (829)
T ss_pred             EEEcCCcceEEEEecCCcEEEEecchhhhhhccCCCCCCchHhceeec
Confidence            99999999999999999999988776665555441 122223556653

>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]

Probab=88.14  E-value=26  Score=33.86  Aligned_cols=110  Identities=10%  Similarity=0.056  Sum_probs=62.2

Q ss_pred             EECCCCCEEEEecCCCcEEEEEcccceeeeee-cCCccceEEEEEcCC--CCc---EEEEEeCCCeEEE--EeCCCCeeE
Q 021247          165 AWSPDGRRIACGSMDGTISVFDVTRAKFLHHL-EGHFMPVRSLVYSPV--DPR---VLFSASDDTHVHM--YDAEGKSLV  236 (315)
Q Consensus       165 ~~~~~~~~l~~~s~dg~i~i~d~~~~~~~~~~-~~~~~~v~~~~~~~~--~~~---~l~s~~~d~~i~~--wd~~~~~~~  236 (315)
                      ..+.+...++.++.++.+...++..+.....- +.....|.|+.++|.  ++.   +++.|..+..+.+  +........
T Consensus       494 ~~~~n~sqVvvA~~~~~l~y~~i~~~~l~e~~~~~~e~evaCLDisp~~d~~~~s~~~aVG~Ws~~~~~l~~~pd~~~~~  573 (1096)
T KOG1897|consen  494 VVSANASQVVVAGGGLALFYLEIEDGGLREVSHKEFEYEVACLDISPLGDAPNKSRLLAVGLWSDISMILTFLPDLILIT  573 (1096)
T ss_pred             EEeecceEEEEecCccEEEEEEeeccceeeeeeheecceeEEEecccCCCCCCcceEEEEEeecceEEEEEECCCcceee
Confidence            33344456777777777877777655522111 123467899999975  333   7777776655433  322222222


Q ss_pred             EEeeccc---ccEEEEEEcCCCCeEEEEeCCCcEEEEecCc
Q 021247          237 TAMSGHA---SWVLSVDASPDGAAITTGSSDRTVKLWDLNM  274 (315)
Q Consensus       237 ~~~~~~~---~~i~~~~~~~~~~~l~s~~~d~~i~iwd~~~  274 (315)
                      ....+-.   -.|.-..+-.+..+|.++..||.+..|.++.
T Consensus       574 ~~~l~~~~iPRSIl~~~~e~d~~yLlvalgdG~l~~fv~d~  614 (1096)
T KOG1897|consen  574 HEQLSGEIIPRSILLTTFEGDIHYLLVALGDGALLYFVLDI  614 (1096)
T ss_pred             eeccCCCccchheeeEEeeccceEEEEEcCCceEEEEEEEc
Confidence            2211111   1233344444578999999999988776543

>PF13449 Phytase-like: Esterase-like activity of phytase

Probab=88.13  E-value=15  Score=31.06  Aligned_cols=115  Identities=16%  Similarity=0.230  Sum_probs=65.4

Q ss_pred             cceEEEEeCCCCCEEEEeeCCCe------EEEEECCCC----ceeE-----EeeCCcc--------cEEEEEECCCCCeE
Q 021247           61 LGVVSVAAHPSGIIAASASLDSF------VRVFDVDTN----ASIA-----TLEASPS--------EVWQMQFDPKGTTL  117 (315)
Q Consensus        61 ~~v~~~~~~~~g~~l~s~~~d~~------i~~w~~~~~----~~~~-----~~~~~~~--------~v~~~~~~~~~~~~  117 (315)
                      ++...|.+.+++..+++.+.++.      +...++...    ..+.     .+....+        ...++++.+++. +
T Consensus        20 GGlSgl~~~~~~~~~~avSD~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~G~~~~~~~~D~Egi~~~~~g~-~   98 (326)
T PF13449_consen   20 GGLSGLDYDPDDGRFYAVSDRGPNKGPPRFYTFRIDYDQGGIGGVTILDMIPLRDPDGQPFPKNGLDPEGIAVPPDGS-F   98 (326)
T ss_pred             CcEeeEEEeCCCCEEEEEECCCCCCCCCcEEEEEeeccCCCccceEeccceeccCCCCCcCCcCCCChhHeEEecCCC-E
Confidence            45677778766666677777777      555555431    1111     1111111        344677755555 5


Q ss_pred             EEEecCC------CeEEEEecCCcceeeeecCCCCCCCCCC--ccCCCCcceEEEEECCCCCEEEEec
Q 021247          118 AVAGGGS------ASVKLWDTATWNLIATLSIPRPEGLKPT--DKSSSKKFVLSVAWSPDGRRIACGS  177 (315)
Q Consensus       118 ~~~~~~d------~~i~~~d~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~i~~~~~~~~~~~l~~~s  177 (315)
                      +++.-.+      ..|..++.. ++....+.+|........  .....+.-+-+|+++|+|+.|++..
T Consensus        99 ~is~E~~~~~~~~p~I~~~~~~-G~~~~~~~vP~~~~~~~~~~~~~~~N~G~E~la~~~dG~~l~~~~  165 (326)
T PF13449_consen   99 WISSEGGRTGGIPPRIRRFDLD-GRVIRRFPVPAAFLPDANGTSGRRNNRGFEGLAVSPDGRTLFAAM  165 (326)
T ss_pred             EEEeCCccCCCCCCEEEEECCC-CcccceEccccccccccCccccccCCCCeEEEEECCCCCEEEEEE
Confidence            5666666      788888876 677666655432211110  1223344588999999999666654

>PF12768 Rax2: Cortical protein marker for cell polarity

Probab=88.07  E-value=14  Score=30.51  Aligned_cols=99  Identities=12%  Similarity=0.212  Sum_probs=60.3

Q ss_pred             CcEEEEEcccceeeeeecCCccceEEEEEcCCCCcEEEEEe------CCCeEEEEeCCCCeeEEEee----cccccEEEE
Q 021247          180 GTISVFDVTRAKFLHHLEGHFMPVRSLVYSPVDPRVLFSAS------DDTHVHMYDAEGKSLVTAMS----GHASWVLSV  249 (315)
Q Consensus       180 g~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~------~d~~i~~wd~~~~~~~~~~~----~~~~~i~~~  249 (315)
                      ..|.+||..+.+...--.+-.+.|+++.|.. +.+++++|.      ....+..||.++.+-...-.    .-.+++..+
T Consensus        16 ~~lC~yd~~~~qW~~~g~~i~G~V~~l~~~~-~~~Llv~G~ft~~~~~~~~la~yd~~~~~w~~~~~~~s~~ipgpv~a~   94 (281)
T PF12768_consen   16 PGLCLYDTDNSQWSSPGNGISGTVTDLQWAS-NNQLLVGGNFTLNGTNSSNLATYDFKNQTWSSLGGGSSNSIPGPVTAL   94 (281)
T ss_pred             CEEEEEECCCCEeecCCCCceEEEEEEEEec-CCEEEEEEeeEECCCCceeEEEEecCCCeeeecCCcccccCCCcEEEE
Confidence            3588999887776655555567899999984 566777664      34568889988764322211    124667777


Q ss_pred             EEcC-CC-CeEEEEe-CC--CcEEEEecCccceeh
Q 021247          250 DASP-DG-AAITTGS-SD--RTVKLWDLNMRAAMQ  279 (315)
Q Consensus       250 ~~~~-~~-~~l~s~~-~d--~~i~iwd~~~~~~~~  279 (315)
                      .+.. ++ ++.+.|. .+  ..|..||-..+..+.
T Consensus        95 ~~~~~d~~~~~~aG~~~~g~~~l~~~dGs~W~~i~  129 (281)
T PF12768_consen   95 TFISNDGSNFWVAGRSANGSTFLMKYDGSSWSSIG  129 (281)
T ss_pred             EeeccCCceEEEeceecCCCceEEEEcCCceEecc
Confidence            6633 33 3444443 23  346777765544443

>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat

Probab=87.74  E-value=3  Score=22.51  Aligned_cols=31  Identities=10%  Similarity=0.228  Sum_probs=22.0

Q ss_pred             CCCcEEEEEeCCCeEEEEeCCCCeeEEEeec
Q 021247          211 VDPRVLFSASDDTHVHMYDAEGKSLVTAMSG  241 (315)
Q Consensus       211 ~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~  241 (315)
                      ++..++++...++.|.++|..+...+..+..
T Consensus         2 d~~~lyv~~~~~~~v~~id~~~~~~~~~i~v   32 (42)
T TIGR02276         2 DGTKLYVTNSGSNTVSVIDTATNKVIATIPV   32 (42)
T ss_pred             CCCEEEEEeCCCCEEEEEECCCCeEEEEEEC
Confidence            3445566666788999999988777666543

This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).

>KOG2247 consensus WD40 repeat-containing protein [General function prediction only]

Probab=87.71  E-value=0.071  Score=45.98  Aligned_cols=147  Identities=20%  Similarity=0.281  Sum_probs=96.3

Q ss_pred             ceEEEEeCCCCCEEEEeeCCCeEEEEECCCCceeEEeeCCcccEEEEEECCCCCeEEEEecCCCeEEEEecCCcceeeee
Q 021247           62 GVVSVAAHPSGIIAASASLDSFVRVFDVDTNASIATLEASPSEVWQMQFDPKGTTLAVAGGGSASVKLWDTATWNLIATL  141 (315)
Q Consensus        62 ~v~~~~~~~~g~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~  141 (315)
                      ......+.+.+.-++.++.+..+..+|-... ..... ..+.....++|+.++..+++.+...+.+.+||+.+..... +
T Consensus        36 ~pi~~~w~~e~~nlavaca~tiv~~YD~agq-~~le~-n~tg~aldm~wDkegdvlavlAek~~piylwd~n~eytqq-L  112 (615)
T KOG2247|consen   36 GPIIHRWRPEGHNLAVACANTIVIYYDKAGQ-VILEL-NPTGKALDMAWDKEGDVLAVLAEKTGPIYLWDVNSEYTQQ-L  112 (615)
T ss_pred             ccceeeEecCCCceehhhhhhHHHhhhhhcc-eeccc-CCchhHhhhhhccccchhhhhhhcCCCeeechhhhhhHHH-H
Confidence            4445566677666777777888888885432 22222 1234566788888887777777888999999987532110 0


Q ss_pred             cCCCCCCCCCCccCCCCcceEEEEECCCCCEEEEecCCCcEEEEEcccceeeeeecCCccceEEEEEcCCCCcEEEEEeC
Q 021247          142 SIPRPEGLKPTDKSSSKKFVLSVAWSPDGRRIACGSMDGTISVFDVTRAKFLHHLEGHFMPVRSLVYSPVDPRVLFSASD  221 (315)
Q Consensus       142 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~s~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~  221 (315)
                      .            ......-.=+.|++....++.+...|.+.+++..+.+.+-.+..|...+.++++.+.+  +.+.++.
T Consensus       113 E------------~gg~~s~sll~wsKg~~el~ig~~~gn~viynhgtsR~iiv~Gkh~RRgtq~av~lEd--~vil~dc  178 (615)
T KOG2247|consen  113 E------------SGGTSSKSLLAWSKGTPELVIGNNAGNIVIYNHGTSRRIIVMGKHQRRGTQIAVTLED--YVILCDC  178 (615)
T ss_pred             h------------ccCcchHHHHhhccCCccccccccccceEEEeccchhhhhhhcccccceeEEEecccc--eeeecCc
Confidence            0            0000001126788888888888899999999988887776666688899999998733  4455555


Q ss_pred             CCeE
Q 021247          222 DTHV  225 (315)
Q Consensus       222 d~~i  225 (315)
                      |..+
T Consensus       179 d~~L  182 (615)
T KOG2247|consen  179 DNTL  182 (615)
T ss_pred             HHHH
Confidence            5443

>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []

Probab=87.36  E-value=26  Score=32.95  Aligned_cols=113  Identities=11%  Similarity=0.083  Sum_probs=67.2

Q ss_pred             ceEEEEECC--CCCEEEEecCCCcEEEEEccc-------c----e---------eeeeecCCccceEEEEEcCC-CCcEE
Q 021247          160 FVLSVAWSP--DGRRIACGSMDGTISVFDVTR-------A----K---------FLHHLEGHFMPVRSLVYSPV-DPRVL  216 (315)
Q Consensus       160 ~i~~~~~~~--~~~~l~~~s~dg~i~i~d~~~-------~----~---------~~~~~~~~~~~v~~~~~~~~-~~~~l  216 (315)
                      .|+-|....  ....|+++..||.|.+|.+++       .    +         +...+. -....+.++++.. ..+++
T Consensus       102 tIN~i~v~~lg~~EVLl~c~DdG~V~~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~-v~~SaWGLdIh~~~~~rlI  180 (717)
T PF08728_consen  102 TINFIKVGDLGGEEVLLLCTDDGDVLAYYTETIIEAIERFSEDNDSGFSRLKIKPFFHLR-VGASAWGLDIHDYKKSRLI  180 (717)
T ss_pred             eeeEEEecccCCeeEEEEEecCCeEEEEEHHHHHHHHHhhccccccccccccCCCCeEee-cCCceeEEEEEecCcceEE
Confidence            355555544  446788999999999996521       1    0         001111 2236788888722 45566


Q ss_pred             EEEeCCCeEEEEeCCC--Ce-eEEEeecccccEEEEEEcCCC-----C-eEEEEeCCCcEEEEecC
Q 021247          217 FSASDDTHVHMYDAEG--KS-LVTAMSGHASWVLSVDASPDG-----A-AITTGSSDRTVKLWDLN  273 (315)
Q Consensus       217 ~s~~~d~~i~~wd~~~--~~-~~~~~~~~~~~i~~~~~~~~~-----~-~l~s~~~d~~i~iwd~~  273 (315)
                      +.++....|.||-...  .+ .......|..-|.+|+|-++.     . .|++++-.|.+-+|++.
T Consensus       181 AVSsNs~~VTVFaf~l~~~r~~~~~s~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I~  246 (717)
T PF08728_consen  181 AVSSNSQEVTVFAFALVDERFYHVPSHQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKIK  246 (717)
T ss_pred             EEecCCceEEEEEEeccccccccccccccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEEE
Confidence            6666666777664321  11 111111244557788886643     2 78889999999998883

RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].

>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation

Probab=87.19  E-value=14  Score=29.84  Aligned_cols=144  Identities=21%  Similarity=0.235  Sum_probs=79.4

Q ss_pred             ceEEEEeCCCCCEEEEee---CCCeEEEEECCCCceeEEeeCCcccEEEEEECCCCCeEEEEecCCCeEEEE-ecCCcce
Q 021247           62 GVVSVAAHPSGIIAASAS---LDSFVRVFDVDTNASIATLEASPSEVWQMQFDPKGTTLAVAGGGSASVKLW-DTATWNL  137 (315)
Q Consensus        62 ~v~~~~~~~~g~~l~s~~---~d~~i~~w~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~~-d~~~~~~  137 (315)
                      .+.+.+++++|..++...   ....++++...  ....... ....+..-.|++++....+ ...+...+++ +...++.
T Consensus        25 ~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~~~--~~~~~~~-~g~~l~~PS~d~~g~~W~v-~~~~~~~~~~~~~~~g~~  100 (253)
T PF10647_consen   25 DVTSPAVSPDGSRVAAVSEGDGGRSLYVGPAG--GPVRPVL-TGGSLTRPSWDPDGWVWTV-DDGSGGVRVVRDSASGTG  100 (253)
T ss_pred             cccceEECCCCCeEEEEEEcCCCCEEEEEcCC--Ccceeec-cCCccccccccCCCCEEEE-EcCCCceEEEEecCCCcc
Confidence            678899999998877655   33445555443  3222221 2235666778888665443 3444555555 2222221


Q ss_pred             e-eeecCCCCCCCCCCccCCCCcceEEEEECCCCCEEEEec---CCCcEEEEEcc---cc--ee----eeeecCCccceE
Q 021247          138 I-ATLSIPRPEGLKPTDKSSSKKFVLSVAWSPDGRRIACGS---MDGTISVFDVT---RA--KF----LHHLEGHFMPVR  204 (315)
Q Consensus       138 ~-~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~s---~dg~i~i~d~~---~~--~~----~~~~~~~~~~v~  204 (315)
                      . ..+..+.           ....|..+.++|||..++.-.   .++.|.+--+.   .+  ..    ..........+.
T Consensus       101 ~~~~v~~~~-----------~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~~~g~~~~l~~~~~~~~~~~~~v~  169 (253)
T PF10647_consen  101 EPVEVDWPG-----------LRGRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRDGDGVPRRLTGPRRVAPPLLSDVT  169 (253)
T ss_pred             eeEEecccc-----------cCCceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeCCCCCcceeccceEecccccCcce
Confidence            1 1111100           011599999999999887654   35677776553   22  11    111223345788


Q ss_pred             EEEEcCCCCcEEEEEeC
Q 021247          205 SLVYSPVDPRVLFSASD  221 (315)
Q Consensus       205 ~~~~~~~~~~~l~s~~~  221 (315)
                      ++.|.+ +..+++.+..
T Consensus       170 ~v~W~~-~~~L~V~~~~  185 (253)
T PF10647_consen  170 DVAWSD-DSTLVVLGRS  185 (253)
T ss_pred             eeeecC-CCEEEEEeCC
Confidence            999997 4555555443

It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.

>PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates

Probab=86.83  E-value=3.2  Score=37.95  Aligned_cols=35  Identities=26%  Similarity=0.406  Sum_probs=26.3

Q ss_pred             cEEEEEEcC----CCCeEEEEeCCCcEEEEecCccceeh
Q 021247          245 WVLSVDASP----DGAAITTGSSDRTVKLWDLNMRAAMQ  279 (315)
Q Consensus       245 ~i~~~~~~~----~~~~l~s~~~d~~i~iwd~~~~~~~~  279 (315)
                      ....+++++    +..+|++-+.|+++|+||+.++..+.
T Consensus       216 ~~~~~~~~~~~~~~~~~l~tl~~D~~LRiW~l~t~~~~~  254 (547)
T PF11715_consen  216 VAASLAVSSSEINDDTFLFTLSRDHTLRIWSLETGQCLA  254 (547)
T ss_dssp             -EEEEEE-----ETTTEEEEEETTSEEEEEETTTTCEEE
T ss_pred             ccceEEEecceeCCCCEEEEEeCCCeEEEEECCCCeEEE
Confidence            345566666    66799999999999999999988744

The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A.

>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein

Probab=85.94  E-value=20  Score=30.19  Aligned_cols=25  Identities=4%  Similarity=0.058  Sum_probs=16.4

Q ss_pred             CCCEEEEecCCC----cEEEEEcccceee
Q 021247          169 DGRRIACGSMDG----TISVFDVTRAKFL  193 (315)
Q Consensus       169 ~~~~l~~~s~dg----~i~i~d~~~~~~~  193 (315)
                      +++..+.|+.++    .+..||+.+.+..
T Consensus       171 ~~~iYv~GG~~~~~~~~~~~yd~~~~~W~  199 (323)
T TIGR03548       171 QNELYVFGGGSNIAYTDGYKYSPKKNQWQ  199 (323)
T ss_pred             CCEEEEEcCCCCccccceEEEecCCCeeE
Confidence            456667776553    3568898877653

Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.

>PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast [])

Probab=85.44  E-value=7.9  Score=29.22  Aligned_cols=30  Identities=27%  Similarity=0.334  Sum_probs=24.9

Q ss_pred             ccEEEEEEcCCC------CeEEEEeCCCcEEEEecC
Q 021247          244 SWVLSVDASPDG------AAITTGSSDRTVKLWDLN  273 (315)
Q Consensus       244 ~~i~~~~~~~~~------~~l~s~~~d~~i~iwd~~  273 (315)
                      ..+.+++|||.|      -+|++-..++.|.||.-.
T Consensus        86 ~~vv~~aWSP~Gl~~~~rClLavLTs~~~l~l~~~~  121 (173)
T PF12657_consen   86 SQVVSAAWSPSGLGPNGRCLLAVLTSNGRLSLYGPP  121 (173)
T ss_pred             ccEEEEEECCCCCCCCCceEEEEEcCCCeEEEEecC
Confidence            368899999954      378999999999999755

The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 [].

>PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide

Probab=83.80  E-value=4.8  Score=21.37  Aligned_cols=29  Identities=14%  Similarity=0.353  Sum_probs=20.6

Q ss_pred             cccEEEEEECCCCCeEEEEecCC--CeEEEE
Q 021247          102 PSEVWQMQFDPKGTTLAVAGGGS--ASVKLW  130 (315)
Q Consensus       102 ~~~v~~~~~~~~~~~~~~~~~~d--~~i~~~  130 (315)
                      ...-....|+|+|+.+++++..+  |.-.||
T Consensus         8 ~~~~~~p~~SpDGk~i~f~s~~~~~g~~diy   38 (39)
T PF07676_consen    8 PGDDGSPAWSPDGKYIYFTSNRNDRGSFDIY   38 (39)
T ss_dssp             SSSEEEEEE-TTSSEEEEEEECT--SSEEEE
T ss_pred             CccccCEEEecCCCEEEEEecCCCCCCcCEE
Confidence            34566778999999998887766  555554

WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A ....

>PF08801 Nucleoporin_N: Nup133 N terminal like; InterPro: IPR014908 Nucleoporins are the main components of the nuclear pore complex (NPC) in eukaryotic cells, and mediate bidirectional nucleocytoplasmic transport, especially of mRNA and proteins

Probab=83.59  E-value=28  Score=30.66  Aligned_cols=30  Identities=30%  Similarity=0.439  Sum_probs=24.9

Q ss_pred             ceEEEEECCCCCEEEEecCCCcEEEEEccc
Q 021247          160 FVLSVAWSPDGRRIACGSMDGTISVFDVTR  189 (315)
Q Consensus       160 ~i~~~~~~~~~~~l~~~s~dg~i~i~d~~~  189 (315)
                      .|..++..+..+.+++-+.+|.|.+|++..
T Consensus       191 ~I~~v~~d~~r~~ly~l~~~~~Iq~w~l~~  220 (422)
T PF08801_consen  191 KIVQVAVDPSRRLLYTLTSDGSIQVWDLGP  220 (422)
T ss_dssp             -EEEEEEETTTTEEEEEESSE-EEEEEE-S
T ss_pred             ceeeEEecCCcCEEEEEeCCCcEEEEEEeC
Confidence            388999999889999999999999999964

RNA undergoing nuclear export first encounters the basket of the nuclear pore and many nucleoporins are accessible on the basket side of the pore [, ]. This entry represents the N-terminal of Nucleoprotein which forms a seven-bladed beta propeller structure []. ; PDB: 1XKS_A.

>PF08801 Nucleoporin_N: Nup133 N terminal like; InterPro: IPR014908 Nucleoporins are the main components of the nuclear pore complex (NPC) in eukaryotic cells, and mediate bidirectional nucleocytoplasmic transport, especially of mRNA and proteins

Probab=83.48  E-value=31  Score=30.38  Aligned_cols=31  Identities=26%  Similarity=0.498  Sum_probs=25.0

Q ss_pred             ccEEEEEEcCCCCeEEEEeCCCcEEEEecCc
Q 021247          244 SWVLSVDASPDGAAITTGSSDRTVKLWDLNM  274 (315)
Q Consensus       244 ~~i~~~~~~~~~~~l~s~~~d~~i~iwd~~~  274 (315)
                      ..|.++...+..+.+++-..++.|.+|++..
T Consensus       190 ~~I~~v~~d~~r~~ly~l~~~~~Iq~w~l~~  220 (422)
T PF08801_consen  190 PKIVQVAVDPSRRLLYTLTSDGSIQVWDLGP  220 (422)
T ss_dssp             --EEEEEEETTTTEEEEEESSE-EEEEEE-S
T ss_pred             hceeeEEecCCcCEEEEEeCCCcEEEEEEeC
Confidence            3488899999889999999999999999963

RNA undergoing nuclear export first encounters the basket of the nuclear pore and many nucleoporins are accessible on the basket side of the pore [, ]. This entry represents the N-terminal of Nucleoprotein which forms a seven-bladed beta propeller structure []. ; PDB: 1XKS_A.

>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein

Probab=83.00  E-value=27  Score=29.37  Aligned_cols=64  Identities=11%  Similarity=0.159  Sum_probs=33.4

Q ss_pred             CCCEEEEecC-----CCcEEEEEcccceeeee--ecCCccceEEEEEcCCCCcEEEEEeCCC----eEEEEeCCCCe
Q 021247          169 DGRRIACGSM-----DGTISVFDVTRAKFLHH--LEGHFMPVRSLVYSPVDPRVLFSASDDT----HVHMYDAEGKS  234 (315)
Q Consensus       169 ~~~~l~~~s~-----dg~i~i~d~~~~~~~~~--~~~~~~~v~~~~~~~~~~~~l~s~~~d~----~i~~wd~~~~~  234 (315)
                      +++..+.|+.     ...+..||+.+.+....  +......-..+..  .++++++.|+.++    .+.+||.++.+
T Consensus       123 ~~~iYv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~~r~~~~~~~--~~~~iYv~GG~~~~~~~~~~~yd~~~~~  197 (323)
T TIGR03548       123 DGTLYVGGGNRNGKPSNKSYLFNLETQEWFELPDFPGEPRVQPVCVK--LQNELYVFGGGSNIAYTDGYKYSPKKNQ  197 (323)
T ss_pred             CCEEEEEeCcCCCccCceEEEEcCCCCCeeECCCCCCCCCCcceEEE--ECCEEEEEcCCCCccccceEEEecCCCe
Confidence            4556666653     23588899887665332  2111111111111  2456777777653    25678877643

Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.

>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal

Probab=82.22  E-value=16  Score=26.17  Aligned_cols=107  Identities=13%  Similarity=0.134  Sum_probs=60.0

Q ss_pred             EECCCCCEEEEecCCCcEEEEEccccee--------eeeecCCccceEEEEEcC---CCC-cEEEEEeCCCeEEEEeCCC
Q 021247          165 AWSPDGRRIACGSMDGTISVFDVTRAKF--------LHHLEGHFMPVRSLVYSP---VDP-RVLFSASDDTHVHMYDAEG  232 (315)
Q Consensus       165 ~~~~~~~~l~~~s~dg~i~i~d~~~~~~--------~~~~~~~~~~v~~~~~~~---~~~-~~l~s~~~d~~i~~wd~~~  232 (315)
                      .|......|++++..|.|.+++......        +..+ .-...|++++-.+   .+. ..|+.| ...+|..||...
T Consensus         5 kfDG~~pcL~~aT~~gKV~IH~ph~~~~~~~~~~~~i~~L-Nin~~italaaG~l~~~~~~D~LliG-t~t~llaYDV~~   82 (136)
T PF14781_consen    5 KFDGVHPCLACATTGGKVFIHNPHERGQRTGRQDSDISFL-NINQEITALAAGRLKPDDGRDCLLIG-TQTSLLAYDVEN   82 (136)
T ss_pred             EeCCCceeEEEEecCCEEEEECCCccccccccccCceeEE-ECCCceEEEEEEecCCCCCcCEEEEe-ccceEEEEEccc
Confidence            4445556888888999999998764321        1122 2334566665433   333 345444 455799999876


Q ss_pred             CeeEEEeecccccEEEEEEcC---CCCeEEEEeCCCcEEEEecCc
Q 021247          233 KSLVTAMSGHASWVLSVDASP---DGAAITTGSSDRTVKLWDLNM  274 (315)
Q Consensus       233 ~~~~~~~~~~~~~i~~~~~~~---~~~~l~s~~~d~~i~iwd~~~  274 (315)
                      ..-+.. +.-...++++.+-.   ...-++..+.+..|.-||..-
T Consensus        83 N~d~Fy-ke~~DGvn~i~~g~~~~~~~~l~ivGGncsi~Gfd~~G  126 (136)
T PF14781_consen   83 NSDLFY-KEVPDGVNAIVIGKLGDIPSPLVIVGGNCSIQGFDYEG  126 (136)
T ss_pred             Cchhhh-hhCccceeEEEEEecCCCCCcEEEECceEEEEEeCCCC
Confidence            543321 12234566665532   223345555577777777653

>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family

Probab=82.10  E-value=31  Score=29.36  Aligned_cols=14  Identities=7%  Similarity=0.271  Sum_probs=10.2

Q ss_pred             CcEEEEEcccceee
Q 021247          180 GTISVFDVTRAKFL  193 (315)
Q Consensus       180 g~i~i~d~~~~~~~  193 (315)
                      ..+..||..+++..
T Consensus       168 ~~v~~YDp~t~~W~  181 (346)
T TIGR03547       168 KNVLSYDPSTNQWR  181 (346)
T ss_pred             ceEEEEECCCCcee
Confidence            46888998877654

Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein.

>PF01436 NHL: NHL repeat; InterPro: IPR001258 The NHL repeat, named after NCL-1, HT2A and Lin-41, is found largely in a large number of eukaryotic and prokaryotic proteins

Probab=81.95  E-value=4.6  Score=19.81  Aligned_cols=25  Identities=20%  Similarity=0.355  Sum_probs=17.1

Q ss_pred             EEEEEEcCCCCeEEEEeCCCcEEEE
Q 021247          246 VLSVDASPDGAAITTGSSDRTVKLW  270 (315)
Q Consensus       246 i~~~~~~~~~~~l~s~~~d~~i~iw  270 (315)
                      ..+++++++|+++++=..+.+|.+|
T Consensus         4 P~gvav~~~g~i~VaD~~n~rV~vf   28 (28)
T PF01436_consen    4 PHGVAVDSDGNIYVADSGNHRVQVF   28 (28)
T ss_dssp             EEEEEEETTSEEEEEECCCTEEEEE
T ss_pred             CcEEEEeCCCCEEEEECCCCEEEEC
Confidence            4567777777777776666666654

For example, the repeat is found in a variety of enzymes of the copper type II, ascorbate-dependent monooxygenase family which catalyse the C terminus alpha-amidation of biological peptides []. In many it occurs in tandem arrays, for example in the ringfinger beta-box, coiled-coil (RBCC) eukaryotic growth regulators []. The 'Brain Tumor' protein (Brat) is one such growth regulator that contains a 6-bladed NHL-repeat beta-propeller [, ]. The NHL repeats are also found in serine/threonine protein kinase (STPK) in diverse range of pathogenic bacteria. These STPK are transmembrane receptors with a intracellular N-terminal kinase domain and extracellular C-terminal sensor domain. In the STPK, PknD, from Mycobacterium tuberculosis, the sensor domain forms a rigid, six-bladed b-propeller composed of NHL repeats with a flexible tether to the transmembrane domain.; GO: 0005515 protein binding; PDB: 3FVZ_A 3FW0_A 1RWL_A 1RWI_A 1Q7F_A.

>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes

Probab=81.83  E-value=25  Score=28.23  Aligned_cols=148  Identities=16%  Similarity=0.150  Sum_probs=69.8

Q ss_pred             EEEcCCCCcceeeccccccceEEEEeCCCCCEEEEeeCC---CeEEEEECCC--Ccee-EEe---eCCcccEEEEEECCC
Q 021247           43 KLWRPDDMQLERTNTGHCLGVVSVAAHPSGIIAASASLD---SFVRVFDVDT--NASI-ATL---EASPSEVWQMQFDPK  113 (315)
Q Consensus        43 ~~w~~~~~~~~~~~~~h~~~v~~~~~~~~g~~l~s~~~d---~~i~~w~~~~--~~~~-~~~---~~~~~~v~~~~~~~~  113 (315)
                      .+||+.+.+..........-+..-.+-++|.++.+|+.-   ..+|+++.-.  ..+- ...   -.....--.+..-|+
T Consensus        49 ~~yD~~tn~~rpl~v~td~FCSgg~~L~dG~ll~tGG~~~G~~~ir~~~p~~~~~~~~w~e~~~~m~~~RWYpT~~~L~D  128 (243)
T PF07250_consen   49 VEYDPNTNTFRPLTVQTDTFCSGGAFLPDGRLLQTGGDNDGNKAIRIFTPCTSDGTCDWTESPNDMQSGRWYPTATTLPD  128 (243)
T ss_pred             EEEecCCCcEEeccCCCCCcccCcCCCCCCCEEEeCCCCccccceEEEecCCCCCCCCceECcccccCCCccccceECCC
Confidence            467777665433221111222233466899999888652   3477777544  0111 000   001111123344578


Q ss_pred             CCeEEEEecCCCeEEEEecCCc-ceeeeecCCCCCCCCCCccCCCCcceEEEEECCCCCEEEEecCCCcEEEEEccccee
Q 021247          114 GTTLAVAGGGSASVKLWDTATW-NLIATLSIPRPEGLKPTDKSSSKKFVLSVAWSPDGRRIACGSMDGTISVFDVTRAKF  192 (315)
Q Consensus       114 ~~~~~~~~~~d~~i~~~d~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~s~dg~i~i~d~~~~~~  192 (315)
                      |+.+++.|....+..+|.-+.. .....+.....     ..........--+-..|+|+.|+.+..+.  .+||..+++.
T Consensus       129 G~vlIvGG~~~~t~E~~P~~~~~~~~~~~~~l~~-----~~~~~~~nlYP~~~llPdG~lFi~an~~s--~i~d~~~n~v  201 (243)
T PF07250_consen  129 GRVLIVGGSNNPTYEFWPPKGPGPGPVTLPFLSQ-----TSDTLPNNLYPFVHLLPDGNLFIFANRGS--IIYDYKTNTV  201 (243)
T ss_pred             CCEEEEeCcCCCcccccCCccCCCCceeeecchh-----hhccCccccCceEEEcCCCCEEEEEcCCc--EEEeCCCCeE
Confidence            8876665555444445543211 00000000000     00011111223466679999998887654  4568877766


Q ss_pred             eeeec
Q 021247          193 LHHLE  197 (315)
Q Consensus       193 ~~~~~  197 (315)
                      +..+.
T Consensus       202 ~~~lP  206 (243)
T PF07250_consen  202 VRTLP  206 (243)
T ss_pred             EeeCC
Confidence            55543

Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium [].

>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3

Probab=81.25  E-value=5.8  Score=30.89  Aligned_cols=49  Identities=16%  Similarity=0.331  Sum_probs=35.6

Q ss_pred             eEEEEeCCCcEEEEecCc--cceehcccccccceEEEEEeeCCCEEEEEeCC
Q 021247          257 AITTGSSDRTVKLWDLNM--RAAMQSMTNHTDQVWGVSFRPLGGRVVSVSDD  306 (315)
Q Consensus       257 ~l~s~~~d~~i~iwd~~~--~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d  306 (315)
                      .|..+...+.|.+|++..  .+++.++..- +.|..+.++..|.+|+|.=.+
T Consensus        30 ~Lfva~~g~~Vev~~l~~~~~~~~~~F~Tv-~~V~~l~y~~~GDYlvTlE~k   80 (215)
T PF14761_consen   30 ALFVAASGCKVEVYDLEQEECPLLCTFSTV-GRVLQLVYSEAGDYLVTLEEK   80 (215)
T ss_pred             eEEEEcCCCEEEEEEcccCCCceeEEEcch-hheeEEEeccccceEEEEEee
Confidence            444446677899999983  3445555543 789999999999999986443

>KOG2377 consensus Uncharacterized conserved protein [Function unknown]

Probab=80.86  E-value=39  Score=29.79  Aligned_cols=55  Identities=11%  Similarity=0.152  Sum_probs=39.8

Q ss_pred             CCCcceEEEEECCCCCEEEEecCCCcEEEEEccccee----eeeecCCccceEEEEEcC
Q 021247          156 SSKKFVLSVAWSPDGRRIACGSMDGTISVFDVTRAKF----LHHLEGHFMPVRSLVYSP  210 (315)
Q Consensus       156 ~~~~~i~~~~~~~~~~~l~~~s~dg~i~i~d~~~~~~----~~~~~~~~~~v~~~~~~~  210 (315)
                      ..++.|.++.|++|.+.+|+--.+.+|.+++....+.    ..+.+..+..|..+.|+.
T Consensus        64 ~d~G~I~SIkFSlDnkilAVQR~~~~v~f~nf~~d~~~l~~~~~ck~k~~~IlGF~W~~  122 (657)
T KOG2377|consen   64 DDKGEIKSIKFSLDNKILAVQRTSKTVDFCNFIPDNSQLEYTQECKTKNANILGFCWTS  122 (657)
T ss_pred             cCCCceeEEEeccCcceEEEEecCceEEEEecCCCchhhHHHHHhccCcceeEEEEEec
Confidence            3455799999999999999999999999998732222    122333445688888875

>PRK14131 N-acetylneuraminic acid mutarotase; Provisional

Probab=80.57  E-value=37  Score=29.35  Aligned_cols=13  Identities=23%  Similarity=0.161  Sum_probs=8.8

Q ss_pred             eEEEEecCCccee
Q 021247          126 SVKLWDTATWNLI  138 (315)
Q Consensus       126 ~i~~~d~~~~~~~  138 (315)
                      .+.+||..+.+..
T Consensus       190 ~v~~YD~~t~~W~  202 (376)
T PRK14131        190 EVLSYDPSTNQWK  202 (376)
T ss_pred             eEEEEECCCCeee
Confidence            5788887765543

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	315
3ow8_A	321	Crystal Structure Of The Wd Repeat-Containing Prote		2e-57
2ymu_A	577	Structure Of A Highly Repetitive Propeller Structur		1e-39
2ymu_A	577	Structure Of A Highly Repetitive Propeller Structur		2e-28
2ymu_A	577	Structure Of A Highly Repetitive Propeller Structur		2e-18
3n0e_A	315	Crystal Structure Of Wdr5 Mutant (W330y) Length = 3		5e-24
3n0e_A	315	Crystal Structure Of Wdr5 Mutant (W330y) Length = 3		9e-13
3n0d_A	315	Crystal Structure Of Wdr5 Mutant (W330f) Length = 3		2e-23
3n0d_A	315	Crystal Structure Of Wdr5 Mutant (W330f) Length = 3		1e-12
2h9l_A	329	Wdr5delta23 Length = 329		3e-23
2h9l_A	329	Wdr5delta23 Length = 329		7e-13
3smr_A	312	Crystal Structure Of Human Wd Repeat Domain 5 With		3e-23
3smr_A	312	Crystal Structure Of Human Wd Repeat Domain 5 With		6e-13
2h68_A	312	Histone H3 Recognition And Presentation By The Wdr5		3e-23
2h9m_A	313	Wdr5 In Complex With Unmodified H3k4 Peptide Length		3e-23
2h9m_A	313	Wdr5 In Complex With Unmodified H3k4 Peptide Length		6e-13
3emh_A	318	Structural Basis Of Wdr5-Mll Interaction Length = 3		3e-23
3emh_A	318	Structural Basis Of Wdr5-Mll Interaction Length = 3		6e-13
2gnq_A	336	Structure Of Wdr5 Length = 336		3e-23
3psl_A	318	Fine-Tuning The Stimulation Of Mll1 Methyltransfera		3e-23
2h13_A	317	Crystal Structure Of Wdr5HISTONE H3 COMPLEX Length		3e-23
4a7j_A	318	Symmetric Dimethylation Of H3 Arginine 2 Is A Novel		3e-23
2g99_A	308	Structural Basis For The Specific Recognition Of Me		4e-23
2g99_A	308	Structural Basis For The Specific Recognition Of Me		7e-13
2g9a_A	311	Structural Basis For The Specific Recognition Of Me		4e-23
2g9a_A	311	Structural Basis For The Specific Recognition Of Me		3e-16
2xl2_A	334	Wdr5 In Complex With An Rbbp5 Peptide Recruited To		4e-23
3mxx_A	315	Crystal Structure Of Wdr5 Mutant (S62a) Length = 31		5e-23
3mxx_A	315	Crystal Structure Of Wdr5 Mutant (S62a) Length = 31		6e-13
2co0_A	315	Wdr5 And Unmodified Histone H3 Complex At 2.25 Angs		7e-23
2cnx_A	315	Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.		1e-22
2ovp_B	445	Structure Of The Skp1-Fbw7 Complex Length = 445		3e-18
1p22_A	435	Structure Of A Beta-Trcp1-Skp1-Beta-Catenin Complex		5e-18
1p22_A	435	Structure Of A Beta-Trcp1-Skp1-Beta-Catenin Complex		1e-06
3iza_B	1263	Structure Of An Apoptosome-Procaspase-9 Card Comple		2e-17
3iza_B	1263	Structure Of An Apoptosome-Procaspase-9 Card Comple		5e-11
3iza_B	1263	Structure Of An Apoptosome-Procaspase-9 Card Comple		2e-10
1vyh_C	410	Paf-Ah Holoenzyme: Lis1ALFA2 Length = 410		2e-17
1vyh_C	410	Paf-Ah Holoenzyme: Lis1ALFA2 Length = 410		2e-12
1erj_A	393	Crystal Structure Of The C-Terminal Wd40 Domain Of		4e-17
3fm0_A	345	Crystal Structure Of Wd40 Protein Ciao1 Length = 34		5e-15
3zey_7	318	High-resolution Cryo-electron Microscopy Structure		2e-14
3zey_7	318	High-resolution Cryo-electron Microscopy Structure		9e-13
1gg2_B	340	G Protein Heterotrimer Mutant Gi_alpha_1(G203a) Bet		1e-13
2bcj_B	340	Crystal Structure Of G Protein-coupled Receptor Kin		1e-13
3sn6_B	351	Crystal Structure Of The Beta2 Adrenergic Receptor-		1e-13
1got_B	340	Heterotrimeric Complex Of A Gt-AlphaGI-Alpha Chimer		2e-13
1a0r_B	340	Heterotrimeric Complex Of PhosducinTRANSDUCIN BETA-		2e-13
2pbi_B	354	The Multifunctional Nature Of Gbeta5RGS9 REVEALED F		4e-13
2yno_A	310	Yeast Betaprime Cop 1-304h6 Length = 310		7e-13
2ynn_A	304	Yeast Betaprime Cop 1-304 With Ktktn Motif Length =		7e-13
2ynp_A	604	Yeast Betaprime Cop 1-604 With Ktktn Motif Length =		2e-12
3mkq_A	814	Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subco		2e-12
3iz6_a	380	Localization Of The Small Subunit Ribosomal Protein		2e-12
3iz6_a	380	Localization Of The Small Subunit Ribosomal Protein		6e-11
1gxr_A	337	Wd40 Region Of Human Groucho/tle1 Length = 337		2e-11
2zkq_a	317	Structure Of A Mammalian Ribosomal 40s Subunit With		3e-11
2zkq_a	317	Structure Of A Mammalian Ribosomal 40s Subunit With		1e-09
2zkq_a	317	Structure Of A Mammalian Ribosomal 40s Subunit With		2e-08
4aow_A	340	Crystal Structure Of The Human Rack1 Protein At A R		3e-11
4aow_A	340	Crystal Structure Of The Human Rack1 Protein At A R		1e-09
4aow_A	340	Crystal Structure Of The Human Rack1 Protein At A R		3e-08
3dm0_A	694	Maltose Binding Protein Fusion With Rack1 From A. T		1e-10
3dm0_A	694	Maltose Binding Protein Fusion With Rack1 From A. T		3e-10
3sfz_A	1249	Crystal Structure Of Full-Length Murine Apaf-1 Leng		7e-10
3sfz_A	1249	Crystal Structure Of Full-Length Murine Apaf-1 Leng		2e-09
4ggc_A	318	Structural Analysis Of Human Cdc20 Supports Multi-S		7e-10
4ggc_A	318	Structural Analysis Of Human Cdc20 Supports Multi-S		4e-07
3shf_A	1256	Crystal Structure Of The R265s Mutant Of Full-Lengt		7e-10
3shf_A	1256	Crystal Structure Of The R265s Mutant Of Full-Lengt		2e-09
4gga_A	420	Structural Analysis Of Human Cdc20 Supports Multi-S		1e-09
4gga_A	420	Structural Analysis Of Human Cdc20 Supports Multi-S		7e-07
4ggd_A	431	Structural Analysis Of Human Cdc20 Supports Multisi		1e-09
4ggd_A	431	Structural Analysis Of Human Cdc20 Supports Multisi		8e-07
4aez_A	401	Crystal Structure Of Mitotic Checkpoint Complex Len		2e-09
3jpx_A	402	Eed: A Novel Histone Trimethyllysine Binder Within		2e-09
2qxv_A	361	Structural Basis Of Ezh2 Recognition By Eed Length		2e-09
3iiy_A	365	Crystal Structure Of Eed In Complex With A Trimethy		2e-09
3iiw_A	365	Crystal Structure Of Eed In Complex With A Trimethy		2e-09
3jzn_A	366	Structure Of Eed In Apo Form Length = 366		2e-09
1nex_B	464	Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Comp		3e-09
1nex_B	464	Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Comp		5e-08
3mks_B	464	Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH		3e-09
3mks_B	464	Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH		1e-07
1nr0_A	611	Two Seven-Bladed Beta-Propeller Domains Revealed By		2e-08
2hes_X	330	Cytosolic Iron-sulphur Assembly Protein- 1 Length =		2e-08
3rfh_A	319	Crystal Structure Of The Yeast Rack1 Dimer In Space		4e-08
3rfh_A	319	Crystal Structure Of The Yeast Rack1 Dimer In Space		1e-06
3jyv_R	313	Structure Of The 40s Rrna And Proteins And PE TRNA		5e-08
3jyv_R	313	Structure Of The 40s Rrna And Proteins And PE TRNA		1e-06
3rfg_A	319	Crystal Structure Of The Yeast Rack1 Dimer In Space		5e-08
3rfg_A	319	Crystal Structure Of The Yeast Rack1 Dimer In Space		1e-06
3izb_a	319	Localization Of The Small Subunit Ribosomal Protein		5e-08
3izb_a	319	Localization Of The Small Subunit Ribosomal Protein		1e-06
3frx_A	319	Crystal Structure Of The Yeast Orthologue Of Rack1,		9e-08
3frx_A	319	Crystal Structure Of The Yeast Orthologue Of Rack1,		6e-07
1trj_A	314	Homology Model Of Yeast Rack1 Protein Fitted Into 1		1e-07
1trj_A	314	Homology Model Of Yeast Rack1 Protein Fitted Into 1		1e-06
1l0q_A	391	Tandem Yvtn Beta-Propeller And Pkd Domains From An		2e-06
4g56_B	357	Crystal Structure Of Full Length Prmt5/mep50 Comple		2e-06
2xzm_R	343	Crystal Structure Of The Eukaryotic 40s Ribosomal S		4e-06
3i2n_A	357	Crystal Structure Of Wd40 Repeats Protein Wdr92 Len		6e-06
2xyi_A	430	Crystal Structure Of Nurf55 In Complex With A H4 Pe		8e-06
2yba_A	422	Crystal Structure Of Nurf55 In Complex With Histone		8e-06
2yba_A	422	Crystal Structure Of Nurf55 In Complex With Histone		1e-05
3c99_A	432	Structural Basis Of Histone H4 Recognition By P55 L		8e-06
3odt_A	313	Crystal Structure Of Wd40 Beta Propeller Domain Of		2e-05
3odt_A	313	Crystal Structure Of Wd40 Beta Propeller Domain Of		3e-04
3zwl_B	369	Structure Of Eukaryotic Translation Initiation Fact		6e-05
2aq5_A	402	Crystal Structure Of Murine Coronin-1 Length = 402		7e-05
3gfc_A	425	Crystal Structure Of Histone-Binding Protein Rbbp4		8e-05
2b4e_A	402	Crystal Structure Of Murine Coronin-1: Monoclinic F		9e-05
2pm9_B	297	Crystal Structure Of Yeast Sec1331 VERTEX ELEMENT O		1e-04
3f3p_A	351	Crystal Structure Of The Nucleoporin Pair Nup85-Seh		2e-04
2pm6_B	297	Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF		2e-04
2pm7_B	297	Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF		2e-04
3ewe_A	349	Crystal Structure Of The Nup85SEH1 COMPLEX Length =		2e-04
3f3f_A	351	Crystal Structure Of The Nucleoporin Pair Nup85-Seh		2e-04
3cfs_B	414	Structural Basis Of The Interaction Of Rbap46RBAP48		3e-04
3cfs_B	414	Structural Basis Of The Interaction Of Rbap46RBAP48		7e-04
3cfv_B	414	Structural Basis Of The Interaction Of Rbap46RBAP48		3e-04
3cfv_B	414	Structural Basis Of The Interaction Of Rbap46RBAP48		5e-04
3jrp_A	379	Sec13 With Nup145c (Aa109-179) Insertion Blade Leng		3e-04
1r5m_A	425	Crystal Structure Of The C-Terminal Wd40 Domain Of		6e-04

>pdb|3OW8|A Chain A, Crystal Structure Of The Wd Repeat-Containing Protein 61 Length = 321

Iteration: 1
 Score =  218 bits (556), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 121/314 (38%), Positives = 190/314 (60%), Gaps = 17/314 (5%)
Query: 2   KFAGLKSVENAHEESVWAVTWVPATETRPALLLTGSLDETVKLW--RPDDMQLERTNTGH 59
           ++  L   E AH++++W+V W    +     ++TGSLD+ VK+W  R + + L+ +  GH
Sbjct: 20  QYGILFKQEQAHDDAIWSVAWGTNKKENSETVVTGSLDDLVKVWKWRDERLDLQWSLEGH 79
Query: 60  CLGVVSVAAHPSGIIAASASLDSFVRVFDVDTNASIATLEASPSEVWQMQFDPKGTTLAV 119
            LGVVSV    +  IAAS+SLD+ +R++D++    I +++A P + W + F P    LA 
Sbjct: 80  QLGVVSVDISHTLPIAASSSLDAHIRLWDLENGKQIKSIDAGPVDAWTLAFSPDSQYLAT 139
Query: 120 AGGGSASVKLWDTATWNLIATLSIPRPEGLKPTDKSSSKKFVLSVAWSPDGRRIACGSMD 179
              G+   K+      N+    S     G K     +  KF+LS+A+SPDG+ +A G++D
Sbjct: 140 ---GTHVGKV------NIFGVES-----GKKEYSLDTRGKFILSIAYSPDGKYLASGAID 185
Query: 180 GTISVFDVTRAKFLHHLEGHFMPVRSLVYSPVDPRVLFSASDDTHVHMYDAEGKSLVTAM 239
           G I++FD+   K LH LEGH MP+RSL +SP D ++L +ASDD ++ +YD +  +L   +
Sbjct: 186 GIINIFDIATGKLLHTLEGHAMPIRSLTFSP-DSQLLVTASDDGYIKIYDVQHANLAGTL 244
Query: 240 SGHASWVLSVDASPDGAAITTGSSDRTVKLWDLNMRAAMQSMTNHTDQVWGVSFRPLGGR 299
           SGHASWVL+V   PD     + SSD++VK+WD+  R  + +  +H DQVWGV +   G +
Sbjct: 245 SGHASWVLNVAFCPDDTHFVSSSSDKSVKVWDVGTRTCVHTFFDHQDQVWGVKYNGNGSK 304
Query: 300 VVSVSDDKSISLYE 313
           +VSV DD+ I +Y+
Sbjct: 305 IVSVGDDQEIHIYD 318

>pdb|2YMU|A Chain A, Structure Of A Highly Repetitive Propeller Structure Length = 577

Iteration: 1
 Score =  159 bits (403), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 115/304 (37%), Positives = 166/304 (54%), Gaps = 25/304 (8%)
Query: 12  AHEESVWAVTWVPATETRPALLLTGSLDETVKLWRPDDMQLERTNTGHCLGVVSVAAHPS 71
            H  SVW V + P  +T    + + S D+TVKLW  +  QL +T TGH   V  VA  P 
Sbjct: 55  GHSSSVWGVAFSPDGQT----IASASDDKTVKLWNRNG-QLLQTLTGHSSSVRGVAFSPD 109
Query: 72  GIIAASASLDSFVRVFDVDTNASIATLEASPSEVWQMQFDPKGTTLAVAGGGSASVKLWD 131
           G   ASAS D  V++++ +    + TL    S VW + F P G T+A A     +VKLW+
Sbjct: 110 GQTIASASDDKTVKLWNRNGQL-LQTLTGHSSSVWGVAFSPDGQTIASASD-DKTVKLWN 167
Query: 132 TATWNLIATLSIPRPEGLKPTDKSSSKKFVLSVAWSPDGRRIACGSMDGTISVFDVTRAK 191
                L+ TL          T  SSS   V  VA+SPDG+ IA  S D T+ +++    +
Sbjct: 168 RNG-QLLQTL----------TGHSSS---VWGVAFSPDGQTIASASDDKTVKLWN-RNGQ 212
Query: 192 FLHHLEGHFMPVRSLVYSPVDPRVLFSASDDTHVHMYDAEGKSLVTAMSGHASWVLSVDA 251
            L  L GH   VR + +SP D + + SASDD  V +++  G+ L+  ++GH+S V  V  
Sbjct: 213 LLQTLTGHSSSVRGVAFSP-DGQTIASASDDKTVKLWNRNGQ-LLQTLTGHSSSVNGVAF 270
Query: 252 SPDGAAITTGSSDRTVKLWDLNMRAAMQSMTNHTDQVWGVSFRPLGGRVVSVSDDKSISL 311
            PDG  I + S D+TVKLW+ N +  +Q++T H+  VWGV+F P G  + S SDDK++ L
Sbjct: 271 RPDGQTIASASDDKTVKLWNRNGQL-LQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKL 329
Query: 312 YEYS 315
           +  +
Sbjct: 330 WNRN 333

>pdb|2YMU|A Chain A, Structure Of A Highly Repetitive Propeller Structure Length = 577

Iteration: 1
 Score =  122 bits (307), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 85/218 (38%), Positives = 123/218 (56%), Gaps = 19/218 (8%)
Query: 98  LEASPSEVWQMQFDPKGTTLAVAGGGSASVKLWDTATWNLIATLSIPRPEGLKPTDKSSS 157
           LEA  S V  + F P G T+A A     +VKLW+     L+ TL          T  SSS
Sbjct: 12  LEAHSSSVRGVAFSPDGQTIASASD-DKTVKLWNRNG-QLLQTL----------TGHSSS 59
Query: 158 KKFVLSVAWSPDGRRIACGSMDGTISVFDVTRAKFLHHLEGHFMPVRSLVYSPVDPRVLF 217
              V  VA+SPDG+ IA  S D T+ +++    + L  L GH   VR + +SP D + + 
Sbjct: 60  ---VWGVAFSPDGQTIASASDDKTVKLWN-RNGQLLQTLTGHSSSVRGVAFSP-DGQTIA 114
Query: 218 SASDDTHVHMYDAEGKSLVTAMSGHASWVLSVDASPDGAAITTGSSDRTVKLWDLNMRAA 277
           SASDD  V +++  G+ L+  ++GH+S V  V  SPDG  I + S D+TVKLW+ N +  
Sbjct: 115 SASDDKTVKLWNRNGQ-LLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQL- 172
Query: 278 MQSMTNHTDQVWGVSFRPLGGRVVSVSDDKSISLYEYS 315
           +Q++T H+  VWGV+F P G  + S SDDK++ L+  +
Sbjct: 173 LQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRN 210

>pdb|2YMU|A Chain A, Structure Of A Highly Repetitive Propeller Structure Length = 577

Iteration: 1
 Score = 90.1 bits (222), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 50/125 (40%), Positives = 77/125 (61%), Gaps = 3/125 (2%)
Query: 191 KFLHHLEGHFMPVRSLVYSPVDPRVLFSASDDTHVHMYDAEGKSLVTAMSGHASWVLSVD 250
           K  + LE H   VR + +SP D + + SASDD  V +++  G+ L+  ++GH+S V  V 
Sbjct: 7   KERNRLEAHSSSVRGVAFSP-DGQTIASASDDKTVKLWNRNGQ-LLQTLTGHSSSVWGVA 64
Query: 251 ASPDGAAITTGSSDRTVKLWDLNMRAAMQSMTNHTDQVWGVSFRPLGGRVVSVSDDKSIS 310
            SPDG  I + S D+TVKLW+ N +  +Q++T H+  V GV+F P G  + S SDDK++ 
Sbjct: 65  FSPDGQTIASASDDKTVKLWNRNGQ-LLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVK 123
Query: 311 LYEYS 315
           L+  +
Sbjct: 124 LWNRN 128

>pdb|3N0E|A Chain A, Crystal Structure Of Wdr5 Mutant (W330y) Length = 315

Iteration: 1
 Score =  108 bits (269), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 88/314 (28%), Positives = 149/314 (47%), Gaps = 25/314 (7%)
Query: 6   LKSVENAHEESVWAVTWVPATETRPALLLTGSLDETVKLWRPDDMQLERTNTGHCLGVVS 65
           LK     H ++V +V + P  E     L + S D+ +K+W   D + E+T +GH LG+  
Sbjct: 18  LKFTLAGHTKAVSSVKFSPNGE----WLASSSADKLIKIWGAYDGKFEKTISGHKLGISD 73
Query: 66  VAAHPSGIIAASASLDSFVRVFDVDTNASIATLEASPSEVWQMQFDPKGTTLAVAGGGSA 125
           VA      +  SAS D  ++++DV +   + TL+   + V+   F+P+ + L V+G    
Sbjct: 74  VAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQ-SNLIVSGSFDE 132
Query: 126 SVKLWDTATWNLIATLSIPRPEGLKPTDKSSSKKFVLSVAWSPDGRRIACGSMDGTISVF 185
           SV++WD  T   + TL    P    P         V +V ++ DG  I   S DG   ++
Sbjct: 133 SVRIWDVKTGKCLKTL----PAHSDP---------VSAVHFNRDGSLIVSSSYDGLCRIW 179
Query: 186 DVTRAKFLHHLEGHFMPVRSLVYSPVDPRVLFSASDDTHVHMYD-AEGKSLVTAMSGHAS 244
           D    + L  L     P  S V    + + + +A+ D  + ++D ++GK L T  +GH +
Sbjct: 180 DTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKT-YTGHKN 238
Query: 245 WVLSVDAS---PDGAAITTGSSDRTVKLWDLNMRAAMQSMTNHTDQVWGVSFRPLGGRVV 301
               + A+     G  I +GS D  V +W+L  +  +Q +  HTD V   +  P    + 
Sbjct: 239 EKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIA 298
Query: 302 S--VSDDKSISLYE 313
           S  + +DK+I LY+
Sbjct: 299 SAALENDKTIKLYK 312

>pdb|3N0E|A Chain A, Crystal Structure Of Wdr5 Mutant (W330y) Length = 315

Iteration: 1
 Score = 70.9 bits (172), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 46/200 (23%), Positives = 87/200 (43%), Gaps = 44/200 (22%)
Query: 159 KFVLSVAWSPDGRRIACGSMDGTISVFDVTRAKFLHHLEGHFMPVRSLVYSPVDPRVLFS 218
           K V SV +SP+G  +A  S D  I ++     KF   + GH + +  + +S  D  +L S
Sbjct: 27  KAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSS-DSNLLVS 85
Query: 219 ASDDTHVHMYDAEGKSLVTAMSGHASWVLSVDASPDGAAITTGSSDRTVKLWDLNMRAAM 278
           ASDD  + ++D      +  + GH+++V   + +P    I +GS D +V++WD+     +
Sbjct: 86  ASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCL 145
Query: 279 QSMTNHTD-----------------------QVWG--------------------VSFRP 295
           +++  H+D                       ++W                     V F P
Sbjct: 146 KTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSP 205
Query: 296 LGGRVVSVSDDKSISLYEYS 315
            G  +++ + D ++ L++YS
Sbjct: 206 NGKYILAATLDNTLKLWDYS 225

>pdb|3N0D|A Chain A, Crystal Structure Of Wdr5 Mutant (W330f) Length = 315

Iteration: 1
 Score =  106 bits (264), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 87/314 (27%), Positives = 149/314 (47%), Gaps = 25/314 (7%)
Query: 6   LKSVENAHEESVWAVTWVPATETRPALLLTGSLDETVKLWRPDDMQLERTNTGHCLGVVS 65
           LK     H ++V +V + P  E     L + S D+ +K+W   D + E+T +GH LG+  
Sbjct: 18  LKFTLAGHTKAVSSVKFSPNGE----WLASSSADKLIKIWGAYDGKFEKTISGHKLGISD 73
Query: 66  VAAHPSGIIAASASLDSFVRVFDVDTNASIATLEASPSEVWQMQFDPKGTTLAVAGGGSA 125
           VA      +  SAS D  ++++DV +   + TL+   + V+   F+P+ + L V+G    
Sbjct: 74  VAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQ-SNLIVSGSFDE 132
Query: 126 SVKLWDTATWNLIATLSIPRPEGLKPTDKSSSKKFVLSVAWSPDGRRIACGSMDGTISVF 185
           SV++WD  T   + TL    P    P         V +V ++ DG  I   S DG   ++
Sbjct: 133 SVRIWDVKTGKCLKTL----PAHSDP---------VSAVHFNRDGSLIVSSSYDGLCRIW 179
Query: 186 DVTRAKFLHHLEGHFMPVRSLVYSPVDPRVLFSASDDTHVHMYD-AEGKSLVTAMSGHAS 244
           D    + L  L     P  S V    + + + +A+ D  + ++D ++GK L T  +GH +
Sbjct: 180 DTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKT-YTGHKN 238
Query: 245 WVLSVDAS---PDGAAITTGSSDRTVKLWDLNMRAAMQSMTNHTDQVWGVSFRPLGGRVV 301
               + A+     G  I +GS D  V +W+L  +  +Q +  HTD V   +  P    + 
Sbjct: 239 EKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIA 298
Query: 302 S--VSDDKSISLYE 313
           S  + +DK+I L++
Sbjct: 299 SAALENDKTIKLFK 312

>pdb|3N0D|A Chain A, Crystal Structure Of Wdr5 Mutant (W330f) Length = 315

Iteration: 1
 Score = 70.9 bits (172), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 46/200 (23%), Positives = 87/200 (43%), Gaps = 44/200 (22%)
Query: 159 KFVLSVAWSPDGRRIACGSMDGTISVFDVTRAKFLHHLEGHFMPVRSLVYSPVDPRVLFS 218
           K V SV +SP+G  +A  S D  I ++     KF   + GH + +  + +S  D  +L S
Sbjct: 27  KAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSS-DSNLLVS 85
Query: 219 ASDDTHVHMYDAEGKSLVTAMSGHASWVLSVDASPDGAAITTGSSDRTVKLWDLNMRAAM 278
           ASDD  + ++D      +  + GH+++V   + +P    I +GS D +V++WD+     +
Sbjct: 86  ASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCL 145
Query: 279 QSMTNHTD-----------------------QVWG--------------------VSFRP 295
           +++  H+D                       ++W                     V F P
Sbjct: 146 KTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSP 205
Query: 296 LGGRVVSVSDDKSISLYEYS 315
            G  +++ + D ++ L++YS
Sbjct: 206 NGKYILAATLDNTLKLWDYS 225

>pdb|2H9L|A Chain A, Wdr5delta23 Length = 329

Iteration: 1
 Score =  105 bits (262), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 87/314 (27%), Positives = 149/314 (47%), Gaps = 25/314 (7%)
Query: 6   LKSVENAHEESVWAVTWVPATETRPALLLTGSLDETVKLWRPDDMQLERTNTGHCLGVVS 65
           LK     H ++V +V + P  E     L + S D+ +K+W   D + E+T +GH LG+  
Sbjct: 32  LKFTLAGHTKAVSSVKFSPNGE----WLASSSADKLIKIWGAYDGKFEKTISGHKLGISD 87
Query: 66  VAAHPSGIIAASASLDSFVRVFDVDTNASIATLEASPSEVWQMQFDPKGTTLAVAGGGSA 125
           VA      +  SAS D  ++++DV +   + TL+   + V+   F+P+ + L V+G    
Sbjct: 88  VAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQ-SNLIVSGSFDE 146
Query: 126 SVKLWDTATWNLIATLSIPRPEGLKPTDKSSSKKFVLSVAWSPDGRRIACGSMDGTISVF 185
           SV++WD  T   + TL    P    P         V +V ++ DG  I   S DG   ++
Sbjct: 147 SVRIWDVKTGKCLKTL----PAHSDP---------VSAVHFNRDGSLIVSSSYDGLCRIW 193
Query: 186 DVTRAKFLHHLEGHFMPVRSLVYSPVDPRVLFSASDDTHVHMYD-AEGKSLVTAMSGHAS 244
           D    + L  L     P  S V    + + + +A+ D  + ++D ++GK L T  +GH +
Sbjct: 194 DTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKT-YTGHKN 252
Query: 245 WVLSVDAS---PDGAAITTGSSDRTVKLWDLNMRAAMQSMTNHTDQVWGVSFRPLGGRVV 301
               + A+     G  I +GS D  V +W+L  +  +Q +  HTD V   +  P    + 
Sbjct: 253 EKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIA 312
Query: 302 S--VSDDKSISLYE 313
           S  + +DK+I L++
Sbjct: 313 SAALENDKTIKLWK 326

>pdb|2H9L|A Chain A, Wdr5delta23 Length = 329

Iteration: 1
 Score = 71.2 bits (173), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 46/200 (23%), Positives = 87/200 (43%), Gaps = 44/200 (22%)
Query: 159 KFVLSVAWSPDGRRIACGSMDGTISVFDVTRAKFLHHLEGHFMPVRSLVYSPVDPRVLFS 218
           K V SV +SP+G  +A  S D  I ++     KF   + GH + +  + +S  D  +L S
Sbjct: 41  KAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSS-DSNLLVS 99
Query: 219 ASDDTHVHMYDAEGKSLVTAMSGHASWVLSVDASPDGAAITTGSSDRTVKLWDLNMRAAM 278
           ASDD  + ++D      +  + GH+++V   + +P    I +GS D +V++WD+     +
Sbjct: 100 ASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCL 159
Query: 279 QSMTNHTD-----------------------QVWG--------------------VSFRP 295
           +++  H+D                       ++W                     V F P
Sbjct: 160 KTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSP 219
Query: 296 LGGRVVSVSDDKSISLYEYS 315
            G  +++ + D ++ L++YS
Sbjct: 220 NGKYILAATLDNTLKLWDYS 239

>pdb|3SMR|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With Compound Length = 312

Iteration: 1
 Score =  105 bits (262), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 87/314 (27%), Positives = 149/314 (47%), Gaps = 25/314 (7%)
Query: 6   LKSVENAHEESVWAVTWVPATETRPALLLTGSLDETVKLWRPDDMQLERTNTGHCLGVVS 65
           LK     H ++V +V + P  E     L + S D+ +K+W   D + E+T +GH LG+  
Sbjct: 15  LKFTLAGHTKAVSSVKFSPNGE----WLASSSADKLIKIWGAYDGKFEKTISGHKLGISD 70
Query: 66  VAAHPSGIIAASASLDSFVRVFDVDTNASIATLEASPSEVWQMQFDPKGTTLAVAGGGSA 125
           VA      +  SAS D  ++++DV +   + TL+   + V+   F+P+ + L V+G    
Sbjct: 71  VAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQ-SNLIVSGSFDE 129
Query: 126 SVKLWDTATWNLIATLSIPRPEGLKPTDKSSSKKFVLSVAWSPDGRRIACGSMDGTISVF 185
           SV++WD  T   + TL    P    P         V +V ++ DG  I   S DG   ++
Sbjct: 130 SVRIWDVKTGKCLKTL----PAHSDP---------VSAVHFNRDGSLIVSSSYDGLCRIW 176
Query: 186 DVTRAKFLHHLEGHFMPVRSLVYSPVDPRVLFSASDDTHVHMYD-AEGKSLVTAMSGHAS 244
           D    + L  L     P  S V    + + + +A+ D  + ++D ++GK L T  +GH +
Sbjct: 177 DTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKT-YTGHKN 235
Query: 245 WVLSVDAS---PDGAAITTGSSDRTVKLWDLNMRAAMQSMTNHTDQVWGVSFRPLGGRVV 301
               + A+     G  I +GS D  V +W+L  +  +Q +  HTD V   +  P    + 
Sbjct: 236 EKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIA 295
Query: 302 S--VSDDKSISLYE 313
           S  + +DK+I L++
Sbjct: 296 SAALENDKTIKLWK 309

>pdb|3SMR|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With Compound Length = 312

Iteration: 1
 Score = 71.6 bits (174), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 46/200 (23%), Positives = 87/200 (43%), Gaps = 44/200 (22%)
Query: 159 KFVLSVAWSPDGRRIACGSMDGTISVFDVTRAKFLHHLEGHFMPVRSLVYSPVDPRVLFS 218
           K V SV +SP+G  +A  S D  I ++     KF   + GH + +  + +S  D  +L S
Sbjct: 24  KAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSS-DSNLLVS 82
Query: 219 ASDDTHVHMYDAEGKSLVTAMSGHASWVLSVDASPDGAAITTGSSDRTVKLWDLNMRAAM 278
           ASDD  + ++D      +  + GH+++V   + +P    I +GS D +V++WD+     +
Sbjct: 83  ASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCL 142
Query: 279 QSMTNHTD-----------------------QVWG--------------------VSFRP 295
           +++  H+D                       ++W                     V F P
Sbjct: 143 KTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSP 202
Query: 296 LGGRVVSVSDDKSISLYEYS 315
            G  +++ + D ++ L++YS
Sbjct: 203 NGKYILAATLDNTLKLWDYS 222

>pdb|2H68|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module Of The Mll1 Complex Length = 312

Iteration: 1
 Score =  105 bits (262), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 87/314 (27%), Positives = 149/314 (47%), Gaps = 25/314 (7%)
Query: 6   LKSVENAHEESVWAVTWVPATETRPALLLTGSLDETVKLWRPDDMQLERTNTGHCLGVVS 65
           LK     H ++V +V + P  E     L + S D+ +K+W   D + E+T +GH LG+  
Sbjct: 15  LKFTLAGHTKAVSSVKFSPNGE----WLASSSADKLIKIWGAYDGKFEKTISGHKLGISD 70
Query: 66  VAAHPSGIIAASASLDSFVRVFDVDTNASIATLEASPSEVWQMQFDPKGTTLAVAGGGSA 125
           VA      +  SAS D  ++++DV +   + TL+   + V+   F+P+ + L V+G    
Sbjct: 71  VAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQ-SNLIVSGSFDE 129
Query: 126 SVKLWDTATWNLIATLSIPRPEGLKPTDKSSSKKFVLSVAWSPDGRRIACGSMDGTISVF 185
           SV++WD  T   + TL    P    P         V +V ++ DG  I   S DG   ++
Sbjct: 130 SVRIWDVKTGKCLKTL----PAHSDP---------VSAVHFNRDGSLIVSSSYDGLCRIW 176
Query: 186 DVTRAKFLHHLEGHFMPVRSLVYSPVDPRVLFSASDDTHVHMYD-AEGKSLVTAMSGHAS 244
           D    + L  L     P  S V    + + + +A+ D  + ++D ++GK L T  +GH +
Sbjct: 177 DTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKT-YTGHKN 235
Query: 245 WVLSVDAS---PDGAAITTGSSDRTVKLWDLNMRAAMQSMTNHTDQVWGVSFRPLGGRVV 301
               + A+     G  I +GS D  V +W+L  +  +Q +  HTD V   +  P    + 
Sbjct: 236 EKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIA 295
Query: 302 S--VSDDKSISLYE 313
           S  + +DK+I L++
Sbjct: 296 SAALENDKTIKLWK 309

>pdb|2H9M|A Chain A, Wdr5 In Complex With Unmodified H3k4 Peptide Length = 313

Iteration: 1
 Score =  105 bits (262), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 87/314 (27%), Positives = 149/314 (47%), Gaps = 25/314 (7%)
Query: 6   LKSVENAHEESVWAVTWVPATETRPALLLTGSLDETVKLWRPDDMQLERTNTGHCLGVVS 65
           LK     H ++V +V + P  E     L + S D+ +K+W   D + E+T +GH LG+  
Sbjct: 16  LKFTLAGHTKAVSSVKFSPNGE----WLASSSADKLIKIWGAYDGKFEKTISGHKLGISD 71
Query: 66  VAAHPSGIIAASASLDSFVRVFDVDTNASIATLEASPSEVWQMQFDPKGTTLAVAGGGSA 125
           VA      +  SAS D  ++++DV +   + TL+   + V+   F+P+ + L V+G    
Sbjct: 72  VAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQ-SNLIVSGSFDE 130
Query: 126 SVKLWDTATWNLIATLSIPRPEGLKPTDKSSSKKFVLSVAWSPDGRRIACGSMDGTISVF 185
           SV++WD  T   + TL    P    P         V +V ++ DG  I   S DG   ++
Sbjct: 131 SVRIWDVKTGKCLKTL----PAHSDP---------VSAVHFNRDGSLIVSSSYDGLCRIW 177
Query: 186 DVTRAKFLHHLEGHFMPVRSLVYSPVDPRVLFSASDDTHVHMYD-AEGKSLVTAMSGHAS 244
           D    + L  L     P  S V    + + + +A+ D  + ++D ++GK L T  +GH +
Sbjct: 178 DTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKT-YTGHKN 236
Query: 245 WVLSVDAS---PDGAAITTGSSDRTVKLWDLNMRAAMQSMTNHTDQVWGVSFRPLGGRVV 301
               + A+     G  I +GS D  V +W+L  +  +Q +  HTD V   +  P    + 
Sbjct: 237 EKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIA 296
Query: 302 S--VSDDKSISLYE 313
           S  + +DK+I L++
Sbjct: 297 SAALENDKTIKLWK 310

>pdb|2H9M|A Chain A, Wdr5 In Complex With Unmodified H3k4 Peptide Length = 313

Iteration: 1
 Score = 71.2 bits (173), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 46/200 (23%), Positives = 87/200 (43%), Gaps = 44/200 (22%)
Query: 159 KFVLSVAWSPDGRRIACGSMDGTISVFDVTRAKFLHHLEGHFMPVRSLVYSPVDPRVLFS 218
           K V SV +SP+G  +A  S D  I ++     KF   + GH + +  + +S  D  +L S
Sbjct: 25  KAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSS-DSNLLVS 83
Query: 219 ASDDTHVHMYDAEGKSLVTAMSGHASWVLSVDASPDGAAITTGSSDRTVKLWDLNMRAAM 278
           ASDD  + ++D      +  + GH+++V   + +P    I +GS D +V++WD+     +
Sbjct: 84  ASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCL 143
Query: 279 QSMTNHTD-----------------------QVWG--------------------VSFRP 295
           +++  H+D                       ++W                     V F P
Sbjct: 144 KTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSP 203
Query: 296 LGGRVVSVSDDKSISLYEYS 315
            G  +++ + D ++ L++YS
Sbjct: 204 NGKYILAATLDNTLKLWDYS 223

>pdb|3EMH|A Chain A, Structural Basis Of Wdr5-Mll Interaction Length = 318

Iteration: 1
 Score =  105 bits (262), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 87/314 (27%), Positives = 149/314 (47%), Gaps = 25/314 (7%)
Query: 6   LKSVENAHEESVWAVTWVPATETRPALLLTGSLDETVKLWRPDDMQLERTNTGHCLGVVS 65
           LK     H ++V +V + P  E     L + S D+ +K+W   D + E+T +GH LG+  
Sbjct: 21  LKFTLAGHTKAVSSVKFSPNGE----WLASSSADKLIKIWGAYDGKFEKTISGHKLGISD 76
Query: 66  VAAHPSGIIAASASLDSFVRVFDVDTNASIATLEASPSEVWQMQFDPKGTTLAVAGGGSA 125
           VA      +  SAS D  ++++DV +   + TL+   + V+   F+P+ + L V+G    
Sbjct: 77  VAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQ-SNLIVSGSFDE 135
Query: 126 SVKLWDTATWNLIATLSIPRPEGLKPTDKSSSKKFVLSVAWSPDGRRIACGSMDGTISVF 185
           SV++WD  T   + TL    P    P         V +V ++ DG  I   S DG   ++
Sbjct: 136 SVRIWDVKTGKCLKTL----PAHSDP---------VSAVHFNRDGSLIVSSSYDGLCRIW 182
Query: 186 DVTRAKFLHHLEGHFMPVRSLVYSPVDPRVLFSASDDTHVHMYD-AEGKSLVTAMSGHAS 244
           D    + L  L     P  S V    + + + +A+ D  + ++D ++GK L T  +GH +
Sbjct: 183 DTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKT-YTGHKN 241
Query: 245 WVLSVDAS---PDGAAITTGSSDRTVKLWDLNMRAAMQSMTNHTDQVWGVSFRPLGGRVV 301
               + A+     G  I +GS D  V +W+L  +  +Q +  HTD V   +  P    + 
Sbjct: 242 EKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIA 301
Query: 302 S--VSDDKSISLYE 313
           S  + +DK+I L++
Sbjct: 302 SAALENDKTIKLWK 315

>pdb|3EMH|A Chain A, Structural Basis Of Wdr5-Mll Interaction Length = 318

Iteration: 1
 Score = 71.2 bits (173), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 46/200 (23%), Positives = 87/200 (43%), Gaps = 44/200 (22%)
Query: 159 KFVLSVAWSPDGRRIACGSMDGTISVFDVTRAKFLHHLEGHFMPVRSLVYSPVDPRVLFS 218
           K V SV +SP+G  +A  S D  I ++     KF   + GH + +  + +S  D  +L S
Sbjct: 30  KAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSS-DSNLLVS 88
Query: 219 ASDDTHVHMYDAEGKSLVTAMSGHASWVLSVDASPDGAAITTGSSDRTVKLWDLNMRAAM 278
           ASDD  + ++D      +  + GH+++V   + +P    I +GS D +V++WD+     +
Sbjct: 89  ASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCL 148
Query: 279 QSMTNHTD-----------------------QVWG--------------------VSFRP 295
           +++  H+D                       ++W                     V F P
Sbjct: 149 KTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSP 208
Query: 296 LGGRVVSVSDDKSISLYEYS 315
            G  +++ + D ++ L++YS
Sbjct: 209 NGKYILAATLDNTLKLWDYS 228

>pdb|2GNQ|A Chain A, Structure Of Wdr5 Length = 336

Iteration: 1
 Score =  105 bits (262), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 87/314 (27%), Positives = 149/314 (47%), Gaps = 25/314 (7%)
Query: 6   LKSVENAHEESVWAVTWVPATETRPALLLTGSLDETVKLWRPDDMQLERTNTGHCLGVVS 65
           LK     H ++V +V + P  E     L + S D+ +K+W   D + E+T +GH LG+  
Sbjct: 39  LKFTLAGHTKAVSSVKFSPNGE----WLASSSADKLIKIWGAYDGKFEKTISGHKLGISD 94
Query: 66  VAAHPSGIIAASASLDSFVRVFDVDTNASIATLEASPSEVWQMQFDPKGTTLAVAGGGSA 125
           VA      +  SAS D  ++++DV +   + TL+   + V+   F+P+ + L V+G    
Sbjct: 95  VAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQ-SNLIVSGSFDE 153
Query: 126 SVKLWDTATWNLIATLSIPRPEGLKPTDKSSSKKFVLSVAWSPDGRRIACGSMDGTISVF 185
           SV++WD  T   + TL    P    P         V +V ++ DG  I   S DG   ++
Sbjct: 154 SVRIWDVKTGKCLKTL----PAHSDP---------VSAVHFNRDGSLIVSSSYDGLCRIW 200
Query: 186 DVTRAKFLHHLEGHFMPVRSLVYSPVDPRVLFSASDDTHVHMYD-AEGKSLVTAMSGHAS 244
           D    + L  L     P  S V    + + + +A+ D  + ++D ++GK L T  +GH +
Sbjct: 201 DTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKT-YTGHKN 259
Query: 245 WVLSVDAS---PDGAAITTGSSDRTVKLWDLNMRAAMQSMTNHTDQVWGVSFRPLGGRVV 301
               + A+     G  I +GS D  V +W+L  +  +Q +  HTD V   +  P    + 
Sbjct: 260 EKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIA 319
Query: 302 S--VSDDKSISLYE 313
           S  + +DK+I L++
Sbjct: 320 SAALENDKTIKLWK 333

>pdb|3PSL|A Chain A, Fine-Tuning The Stimulation Of Mll1 Methyltransferase Activity By A Histone H3 Based Peptide Mimetic Length = 318

Iteration: 1
 Score =  105 bits (262), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 87/314 (27%), Positives = 149/314 (47%), Gaps = 25/314 (7%)
Query: 6   LKSVENAHEESVWAVTWVPATETRPALLLTGSLDETVKLWRPDDMQLERTNTGHCLGVVS 65
           LK     H ++V +V + P  E     L + S D+ +K+W   D + E+T +GH LG+  
Sbjct: 21  LKFTLAGHTKAVSSVKFSPNGE----WLASSSADKLIKIWGAYDGKFEKTISGHKLGISD 76
Query: 66  VAAHPSGIIAASASLDSFVRVFDVDTNASIATLEASPSEVWQMQFDPKGTTLAVAGGGSA 125
           VA      +  SAS D  ++++DV +   + TL+   + V+   F+P+ + L V+G    
Sbjct: 77  VAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQ-SNLIVSGSFDE 135
Query: 126 SVKLWDTATWNLIATLSIPRPEGLKPTDKSSSKKFVLSVAWSPDGRRIACGSMDGTISVF 185
           SV++WD  T   + TL    P    P         V +V ++ DG  I   S DG   ++
Sbjct: 136 SVRIWDVKTGKCLKTL----PAHSDP---------VSAVHFNRDGSLIVSSSYDGLCRIW 182
Query: 186 DVTRAKFLHHLEGHFMPVRSLVYSPVDPRVLFSASDDTHVHMYD-AEGKSLVTAMSGHAS 244
           D    + L  L     P  S V    + + + +A+ D  + ++D ++GK L T  +GH +
Sbjct: 183 DTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKT-YTGHKN 241
Query: 245 WVLSVDAS---PDGAAITTGSSDRTVKLWDLNMRAAMQSMTNHTDQVWGVSFRPLGGRVV 301
               + A+     G  I +GS D  V +W+L  +  +Q +  HTD V   +  P    + 
Sbjct: 242 EKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIA 301
Query: 302 S--VSDDKSISLYE 313
           S  + +DK+I L++
Sbjct: 302 SAALENDKTIKLWK 315

>pdb|2H13|A Chain A, Crystal Structure Of Wdr5HISTONE H3 COMPLEX Length = 317

Iteration: 1
 Score =  105 bits (262), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 87/314 (27%), Positives = 149/314 (47%), Gaps = 25/314 (7%)
Query: 6   LKSVENAHEESVWAVTWVPATETRPALLLTGSLDETVKLWRPDDMQLERTNTGHCLGVVS 65
           LK     H ++V +V + P  E     L + S D+ +K+W   D + E+T +GH LG+  
Sbjct: 20  LKFTLAGHTKAVSSVKFSPNGE----WLASSSADKLIKIWGAYDGKFEKTISGHKLGISD 75
Query: 66  VAAHPSGIIAASASLDSFVRVFDVDTNASIATLEASPSEVWQMQFDPKGTTLAVAGGGSA 125
           VA      +  SAS D  ++++DV +   + TL+   + V+   F+P+ + L V+G    
Sbjct: 76  VAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQ-SNLIVSGSFDE 134
Query: 126 SVKLWDTATWNLIATLSIPRPEGLKPTDKSSSKKFVLSVAWSPDGRRIACGSMDGTISVF 185
           SV++WD  T   + TL    P    P         V +V ++ DG  I   S DG   ++
Sbjct: 135 SVRIWDVKTGKCLKTL----PAHSDP---------VSAVHFNRDGSLIVSSSYDGLCRIW 181
Query: 186 DVTRAKFLHHLEGHFMPVRSLVYSPVDPRVLFSASDDTHVHMYD-AEGKSLVTAMSGHAS 244
           D    + L  L     P  S V    + + + +A+ D  + ++D ++GK L T  +GH +
Sbjct: 182 DTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKT-YTGHKN 240
Query: 245 WVLSVDAS---PDGAAITTGSSDRTVKLWDLNMRAAMQSMTNHTDQVWGVSFRPLGGRVV 301
               + A+     G  I +GS D  V +W+L  +  +Q +  HTD V   +  P    + 
Sbjct: 241 EKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIA 300
Query: 302 S--VSDDKSISLYE 313
           S  + +DK+I L++
Sbjct: 301 SAALENDKTIKLWK 314

>pdb|4A7J|A Chain A, Symmetric Dimethylation Of H3 Arginine 2 Is A Novel Histone Mark That Supports Euchromatin Maintenance Length = 318

Iteration: 1
 Score =  105 bits (262), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 87/314 (27%), Positives = 149/314 (47%), Gaps = 25/314 (7%)
Query: 6   LKSVENAHEESVWAVTWVPATETRPALLLTGSLDETVKLWRPDDMQLERTNTGHCLGVVS 65
           LK     H ++V +V + P  E     L + S D+ +K+W   D + E+T +GH LG+  
Sbjct: 21  LKFTLAGHTKAVSSVKFSPNGE----WLASSSADKLIKIWGAYDGKFEKTISGHKLGISD 76
Query: 66  VAAHPSGIIAASASLDSFVRVFDVDTNASIATLEASPSEVWQMQFDPKGTTLAVAGGGSA 125
           VA      +  SAS D  ++++DV +   + TL+   + V+   F+P+ + L V+G    
Sbjct: 77  VAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQ-SNLIVSGSFDE 135
Query: 126 SVKLWDTATWNLIATLSIPRPEGLKPTDKSSSKKFVLSVAWSPDGRRIACGSMDGTISVF 185
           SV++WD  T   + TL    P    P         V +V ++ DG  I   S DG   ++
Sbjct: 136 SVRIWDVKTGKCLKTL----PAHSDP---------VSAVHFNRDGSLIVSSSYDGLCRIW 182
Query: 186 DVTRAKFLHHLEGHFMPVRSLVYSPVDPRVLFSASDDTHVHMYD-AEGKSLVTAMSGHAS 244
           D    + L  L     P  S V    + + + +A+ D  + ++D ++GK L T  +GH +
Sbjct: 183 DTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKT-YTGHKN 241
Query: 245 WVLSVDAS---PDGAAITTGSSDRTVKLWDLNMRAAMQSMTNHTDQVWGVSFRPLGGRVV 301
               + A+     G  I +GS D  V +W+L  +  +Q +  HTD V   +  P    + 
Sbjct: 242 EKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIA 301
Query: 302 S--VSDDKSISLYE 313
           S  + +DK+I L++
Sbjct: 302 SAALENDKTIKLWK 315

>pdb|2G99|A Chain A, Structural Basis For The Specific Recognition Of Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5 Length = 308

Iteration: 1
 Score =  105 bits (262), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 87/314 (27%), Positives = 149/314 (47%), Gaps = 25/314 (7%)
Query: 6   LKSVENAHEESVWAVTWVPATETRPALLLTGSLDETVKLWRPDDMQLERTNTGHCLGVVS 65
           LK     H ++V +V + P  E     L + S D+ +K+W   D + E+T +GH LG+  
Sbjct: 11  LKFTLAGHTKAVSSVKFSPNGE----WLASSSADKLIKIWGAYDGKFEKTISGHKLGISD 66
Query: 66  VAAHPSGIIAASASLDSFVRVFDVDTNASIATLEASPSEVWQMQFDPKGTTLAVAGGGSA 125
           VA      +  SAS D  ++++DV +   + TL+   + V+   F+P+ + L V+G    
Sbjct: 67  VAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQ-SNLIVSGSFDE 125
Query: 126 SVKLWDTATWNLIATLSIPRPEGLKPTDKSSSKKFVLSVAWSPDGRRIACGSMDGTISVF 185
           SV++WD  T   + TL    P    P         V +V ++ DG  I   S DG   ++
Sbjct: 126 SVRIWDVKTGKCLKTL----PAHSDP---------VSAVHFNRDGSLIVSSSYDGLCRIW 172
Query: 186 DVTRAKFLHHLEGHFMPVRSLVYSPVDPRVLFSASDDTHVHMYD-AEGKSLVTAMSGHAS 244
           D    + L  L     P  S V    + + + +A+ D  + ++D ++GK L T  +GH +
Sbjct: 173 DTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKT-YTGHKN 231
Query: 245 WVLSVDAS---PDGAAITTGSSDRTVKLWDLNMRAAMQSMTNHTDQVWGVSFRPLGGRVV 301
               + A+     G  I +GS D  V +W+L  +  +Q +  HTD V   +  P    + 
Sbjct: 232 EKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIA 291
Query: 302 S--VSDDKSISLYE 313
           S  + +DK+I L++
Sbjct: 292 SAALENDKTIKLWK 305

>pdb|2G99|A Chain A, Structural Basis For The Specific Recognition Of Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5 Length = 308

Iteration: 1
 Score = 71.2 bits (173), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 46/200 (23%), Positives = 87/200 (43%), Gaps = 44/200 (22%)
Query: 159 KFVLSVAWSPDGRRIACGSMDGTISVFDVTRAKFLHHLEGHFMPVRSLVYSPVDPRVLFS 218
           K V SV +SP+G  +A  S D  I ++     KF   + GH + +  + +S  D  +L S
Sbjct: 20  KAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSS-DSNLLVS 78
Query: 219 ASDDTHVHMYDAEGKSLVTAMSGHASWVLSVDASPDGAAITTGSSDRTVKLWDLNMRAAM 278
           ASDD  + ++D      +  + GH+++V   + +P    I +GS D +V++WD+     +
Sbjct: 79  ASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCL 138
Query: 279 QSMTNHTD-----------------------QVWG--------------------VSFRP 295
           +++  H+D                       ++W                     V F P
Sbjct: 139 KTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSP 198
Query: 296 LGGRVVSVSDDKSISLYEYS 315
            G  +++ + D ++ L++YS
Sbjct: 199 NGKYILAATLDNTLKLWDYS 218

>pdb|2G9A|A Chain A, Structural Basis For The Specific Recognition Of Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5 Length = 311

Iteration: 1
 Score =  105 bits (262), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 87/314 (27%), Positives = 149/314 (47%), Gaps = 25/314 (7%)
Query: 6   LKSVENAHEESVWAVTWVPATETRPALLLTGSLDETVKLWRPDDMQLERTNTGHCLGVVS 65
           LK     H ++V +V + P  E     L + S D+ +K+W   D + E+T +GH LG+  
Sbjct: 14  LKFTLAGHTKAVSSVKFSPNGE----WLASSSADKLIKIWGAYDGKFEKTISGHKLGISD 69
Query: 66  VAAHPSGIIAASASLDSFVRVFDVDTNASIATLEASPSEVWQMQFDPKGTTLAVAGGGSA 125
           VA      +  SAS D  ++++DV +   + TL+   + V+   F+P+ + L V+G    
Sbjct: 70  VAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQ-SNLIVSGSFDE 128
Query: 126 SVKLWDTATWNLIATLSIPRPEGLKPTDKSSSKKFVLSVAWSPDGRRIACGSMDGTISVF 185
           SV++WD  T   + TL    P    P         V +V ++ DG  I   S DG   ++
Sbjct: 129 SVRIWDVKTGKCLKTL----PAHSDP---------VSAVHFNRDGSLIVSSSYDGLCRIW 175
Query: 186 DVTRAKFLHHLEGHFMPVRSLVYSPVDPRVLFSASDDTHVHMYD-AEGKSLVTAMSGHAS 244
           D    + L  L     P  S V    + + + +A+ D  + ++D ++GK L T  +GH +
Sbjct: 176 DTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKT-YTGHKN 234
Query: 245 WVLSVDAS---PDGAAITTGSSDRTVKLWDLNMRAAMQSMTNHTDQVWGVSFRPLGGRVV 301
               + A+     G  I +GS D  V +W+L  +  +Q +  HTD V   +  P    + 
Sbjct: 235 EKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIA 294
Query: 302 S--VSDDKSISLYE 313
           S  + +DK+I L++
Sbjct: 295 SAALENDKTIKLWK 308

>pdb|2G9A|A Chain A, Structural Basis For The Specific Recognition Of Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5 Length = 311

Iteration: 1
 Score = 82.4 bits (202), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 49/169 (28%), Positives = 83/169 (49%), Gaps = 9/169 (5%)
Query: 146 PEGLKPTDKSSSKKFVL--------SVAWSPDGRRIACGSMDGTISVFDVTRAKFLHHLE 197
           P G  P   + + KF L        SV +SP+G  +A  S D  I ++     KF   + 
Sbjct: 2   PLGSTPVKPNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTIS 61
Query: 198 GHFMPVRSLVYSPVDPRVLFSASDDTHVHMYDAEGKSLVTAMSGHASWVLSVDASPDGAA 257
           GH + +  + +S  D  +L SASDD  + ++D      +  + GH+++V   + +P    
Sbjct: 62  GHKLGISDVAWSS-DSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNL 120
Query: 258 ITTGSSDRTVKLWDLNMRAAMQSMTNHTDQVWGVSFRPLGGRVVSVSDD 306
           I +GS D +V++WD+     ++++  H+D V  V F   G  +VS S D
Sbjct: 121 IVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYD 169

>pdb|2XL2|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel Site Length = 334

Iteration: 1
 Score =  105 bits (261), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 87/315 (27%), Positives = 149/315 (47%), Gaps = 25/315 (7%)
Query: 5   GLKSVENAHEESVWAVTWVPATETRPALLLTGSLDETVKLWRPDDMQLERTNTGHCLGVV 64
            LK     H ++V +V + P  E     L + S D+ +K+W   D + E+T +GH LG+ 
Sbjct: 36  ALKFTLAGHTKAVSSVKFSPNGE----WLASSSADKLIKIWGAYDGKFEKTISGHKLGIS 91
Query: 65  SVAAHPSGIIAASASLDSFVRVFDVDTNASIATLEASPSEVWQMQFDPKGTTLAVAGGGS 124
            VA      +  SAS D  ++++DV +   + TL+   + V+   F+P+ + L V+G   
Sbjct: 92  DVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQ-SNLIVSGSFD 150
Query: 125 ASVKLWDTATWNLIATLSIPRPEGLKPTDKSSSKKFVLSVAWSPDGRRIACGSMDGTISV 184
            SV++WD  T   + TL    P    P         V +V ++ DG  I   S DG   +
Sbjct: 151 ESVRIWDVKTGKCLKTL----PAHSDP---------VSAVHFNRDGSLIVSSSYDGLCRI 197
Query: 185 FDVTRAKFLHHLEGHFMPVRSLVYSPVDPRVLFSASDDTHVHMYD-AEGKSLVTAMSGHA 243
           +D    + L  L     P  S V    + + + +A+ D  + ++D ++GK L T  +GH 
Sbjct: 198 WDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKT-YTGHK 256
Query: 244 SWVLSVDAS---PDGAAITTGSSDRTVKLWDLNMRAAMQSMTNHTDQVWGVSFRPLGGRV 300
           +    + A+     G  I +GS D  V +W+L  +  +Q +  HTD V   +  P    +
Sbjct: 257 NEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENII 316
Query: 301 VS--VSDDKSISLYE 313
            S  + +DK+I L++
Sbjct: 317 ASAALENDKTIKLWK 331

>pdb|3MXX|A Chain A, Crystal Structure Of Wdr5 Mutant (S62a) Length = 315

Iteration: 1
 Score =  105 bits (261), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 87/314 (27%), Positives = 148/314 (47%), Gaps = 25/314 (7%)
Query: 6   LKSVENAHEESVWAVTWVPATETRPALLLTGSLDETVKLWRPDDMQLERTNTGHCLGVVS 65
           LK     H ++V +V + P  E     L   S D+ +K+W   D + E+T +GH LG+  
Sbjct: 18  LKFTLAGHTKAVSSVKFSPNGE----WLAASSADKLIKIWGAYDGKFEKTISGHKLGISD 73
Query: 66  VAAHPSGIIAASASLDSFVRVFDVDTNASIATLEASPSEVWQMQFDPKGTTLAVAGGGSA 125
           VA      +  SAS D  ++++DV +   + TL+   + V+   F+P+ + L V+G    
Sbjct: 74  VAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQ-SNLIVSGSFDE 132
Query: 126 SVKLWDTATWNLIATLSIPRPEGLKPTDKSSSKKFVLSVAWSPDGRRIACGSMDGTISVF 185
           SV++WD  T   + TL    P    P         V +V ++ DG  I   S DG   ++
Sbjct: 133 SVRIWDVKTGKCLKTL----PAHSDP---------VSAVHFNRDGSLIVSSSYDGLCRIW 179
Query: 186 DVTRAKFLHHLEGHFMPVRSLVYSPVDPRVLFSASDDTHVHMYD-AEGKSLVTAMSGHAS 244
           D    + L  L     P  S V    + + + +A+ D  + ++D ++GK L T  +GH +
Sbjct: 180 DTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKT-YTGHKN 238
Query: 245 WVLSVDAS---PDGAAITTGSSDRTVKLWDLNMRAAMQSMTNHTDQVWGVSFRPLGGRVV 301
               + A+     G  I +GS D  V +W+L  +  +Q +  HTD V   +  P    + 
Sbjct: 239 EKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIA 298
Query: 302 S--VSDDKSISLYE 313
           S  + +DK+I L++
Sbjct: 299 SAALENDKTIKLWK 312

>pdb|3MXX|A Chain A, Crystal Structure Of Wdr5 Mutant (S62a) Length = 315

Iteration: 1
 Score = 71.2 bits (173), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 46/200 (23%), Positives = 87/200 (43%), Gaps = 44/200 (22%)
Query: 159 KFVLSVAWSPDGRRIACGSMDGTISVFDVTRAKFLHHLEGHFMPVRSLVYSPVDPRVLFS 218
           K V SV +SP+G  +A  S D  I ++     KF   + GH + +  + +S  D  +L S
Sbjct: 27  KAVSSVKFSPNGEWLAASSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSS-DSNLLVS 85
Query: 219 ASDDTHVHMYDAEGKSLVTAMSGHASWVLSVDASPDGAAITTGSSDRTVKLWDLNMRAAM 278
           ASDD  + ++D      +  + GH+++V   + +P    I +GS D +V++WD+     +
Sbjct: 86  ASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCL 145
Query: 279 QSMTNHTD-----------------------QVWG--------------------VSFRP 295
           +++  H+D                       ++W                     V F P
Sbjct: 146 KTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSP 205
Query: 296 LGGRVVSVSDDKSISLYEYS 315
            G  +++ + D ++ L++YS
Sbjct: 206 NGKYILAATLDNTLKLWDYS 225

>pdb|2CO0|A Chain A, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom Length = 315

Iteration: 1
 Score =  104 bits (259), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 85/308 (27%), Positives = 147/308 (47%), Gaps = 25/308 (8%)
Query: 12  AHEESVWAVTWVPATETRPALLLTGSLDETVKLWRPDDMQLERTNTGHCLGVVSVAAHPS 71
            H ++V +V + P  E     L + S D+ +K+W   D + E+T +GH LG+  VA    
Sbjct: 24  GHTKAVSSVKFSPNGE----WLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSD 79
Query: 72  GIIAASASLDSFVRVFDVDTNASIATLEASPSEVWQMQFDPKGTTLAVAGGGSASVKLWD 131
             +  SAS D  ++++DV +   + TL+   + V+   F+P+ + L V+G    SV++WD
Sbjct: 80  SNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQ-SNLIVSGSFDESVRIWD 138
Query: 132 TATWNLIATLSIPRPEGLKPTDKSSSKKFVLSVAWSPDGRRIACGSMDGTISVFDVTRAK 191
             T   + TL    P    P         V +V ++ DG  I   S DG   ++D    +
Sbjct: 139 VKTGMCLKTL----PAHSDP---------VSAVHFNRDGSLIVSSSYDGLCRIWDTASGQ 185
Query: 192 FLHHLEGHFMPVRSLVYSPVDPRVLFSASDDTHVHMYD-AEGKSLVTAMSGHASWVLSVD 250
            L  L     P  S V    + + + +A+ D  + ++D ++GK L T  +GH +    + 
Sbjct: 186 CLKTLIDDDNPPVSFVKFSPNGKYILAATLDNDLKLWDYSKGKCLKT-YTGHKNEKYCIF 244
Query: 251 AS---PDGAAITTGSSDRTVKLWDLNMRAAMQSMTNHTDQVWGVSFRPLGGRVVS--VSD 305
           A+     G  I +GS D  V +W+L  +  +Q +  HTD V   +  P    + S  + +
Sbjct: 245 ANFSVTGGKWIVSGSEDNMVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALEN 304
Query: 306 DKSISLYE 313
           DK+I L++
Sbjct: 305 DKTIKLWK 312

>pdb|2CNX|A Chain A, Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.1 Angstrom Length = 315

Iteration: 1
 Score =  103 bits (258), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 85/308 (27%), Positives = 147/308 (47%), Gaps = 25/308 (8%)
Query: 12  AHEESVWAVTWVPATETRPALLLTGSLDETVKLWRPDDMQLERTNTGHCLGVVSVAAHPS 71
            H ++V +V + P  E     L + S D+ +K+W   D + E+T +GH LG+  VA    
Sbjct: 24  GHTKAVSSVKFSPNGE----WLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSD 79
Query: 72  GIIAASASLDSFVRVFDVDTNASIATLEASPSEVWQMQFDPKGTTLAVAGGGSASVKLWD 131
             +  SAS D  ++++DV +   + TL+   + V+   F+P+ + L V+G    SV++WD
Sbjct: 80  SNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQ-SNLIVSGSFDESVRIWD 138
Query: 132 TATWNLIATLSIPRPEGLKPTDKSSSKKFVLSVAWSPDGRRIACGSMDGTISVFDVTRAK 191
             T   + TL    P    P         V +V ++ DG  I   S DG   ++D    +
Sbjct: 139 VKTGMCLKTL----PAHSDP---------VSAVHFNRDGSLIVSSSYDGLCRIWDTASGQ 185
Query: 192 FLHHLEGHFMPVRSLVYSPVDPRVLFSASDDTHVHMYD-AEGKSLVTAMSGHASWVLSVD 250
            L  L     P  S V    + + + +A+ D  + ++D ++GK L T  +GH +    + 
Sbjct: 186 CLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKT-YTGHKNEKYCIF 244
Query: 251 AS---PDGAAITTGSSDRTVKLWDLNMRAAMQSMTNHTDQVWGVSFRPLGGRVVS--VSD 305
           A+     G  I +GS D  V +W+L  +  +Q +  HTD V   +  P    + S  + +
Sbjct: 245 ANFSVTGGKWIVSGSEDNMVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALEN 304
Query: 306 DKSISLYE 313
           DK+I L++
Sbjct: 305 DKTIKLWK 312

>pdb|2OVP|B Chain B, Structure Of The Skp1-Fbw7 Complex Length = 445

Iteration: 1
 Score = 89.4 bits (220), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 77/284 (27%), Positives = 130/284 (45%), Gaps = 30/284 (10%)
Query: 33  LLTGSLDETVKLWRPDDMQLERTNTGHCLGVVSVAAHPSGIIAASASLDSFVRVFDVDTN 92
           +++GS D T+K+W     +  RT  GH  GV S     + II  S S D  ++V++ +T 
Sbjct: 132 IVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQMRDNIII--SGSTDRTLKVWNAETG 189
Query: 93  ASIATLEASPSEVWQMQFDPKGTTLAVAGGGSASVKLWDTATWNLIATLSIPRPEGLKPT 152
             I TL    S V  M    K     V+G   A++++WD  T   +  L           
Sbjct: 190 ECIHTLYGHTSTVRCMHLHEK---RVVSGSRDATLRVWDIETGQCLHVL----------- 235
Query: 153 DKSSSKKFVLSVAWSPDGRRIACGSMDGTISVFDVTRAKFLHHLEGHFMPVRSLVYSPVD 212
                   V  V +  DGRR+  G+ D  + V+D      LH L+GH   V SL +  + 
Sbjct: 236 --MGHVAAVRCVQY--DGRRVVSGAYDFMVKVWDPETETCLHTLQGHTNRVYSLQFDGIH 291
Query: 213 PRVLFSASDDTHVHMYDAEGKSLVTAMSGHASWVLSVDASPDGAAITTGSSDRTVKLWDL 272
              + S S DT + ++D E  + +  ++GH S    ++   +   + +G++D TVK+WD+
Sbjct: 292 ---VVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGMELKDN--ILVSGNADSTVKIWDI 346
Query: 273 NMRAAMQSM---TNHTDQVWGVSFRPLGGRVVSVSDDKSISLYE 313
                +Q++     H   V  + F      V++ SDD ++ L++
Sbjct: 347 KTGQCLQTLQGPNKHQSAVTCLQFNK--NFVITSSDDGTVKLWD 388

>pdb|1P22|A Chain A, Structure Of A Beta-Trcp1-Skp1-Beta-Catenin Complex: Destruction Motif Binding And Lysine Specificity On The Scfbeta-Trcp1 Ubiquitin Ligase Length = 435

Iteration: 1
 Score = 88.2 bits (217), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 75/295 (25%), Positives = 135/295 (45%), Gaps = 41/295 (13%)
Query: 33  LLTGSLDETVKLWRPDDMQLERTNTGHCLGVVSVAAHPSGIIAASASLDSFVRVFDVDTN 92
           +++G  D T+K+W  + ++ +R  TGH   V+ +      II  S+  DS VRV+DV+T 
Sbjct: 146 IVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQYDERVIITGSS--DSTVRVWDVNTG 203
Query: 93  ASIATLEASPSEVWQMQFDPKGTTLAVAGGGSASVKLWDTATWNLIATLSIPRPEGLKPT 152
             + TL      V  ++F+     + V      S+ +WD A+                PT
Sbjct: 204 EMLNTLIHHCEAVLHLRFN---NGMMVTCSKDRSIAVWDMAS----------------PT 244
Query: 153 DKSSSKKFVLSVAWSP----DGRRIACGSMDGTISVFDVTRAKFLHHLEGHFMPVRSLVY 208
           D +  +  V   A       D + I   S D TI V++ +  +F+  L GH   +  L Y
Sbjct: 245 DITLRRVLVGHRAAVNVVDFDDKYIVSASGDRTIKVWNTSTCEFVRTLNGHKRGIACLQY 304
Query: 209 SPVDPRVLFSASDDTHVHMYDAEGKSLVTAMSGHASWVLSVDASPDGAAITTGSSDRTVK 268
                R++ S S D  + ++D E  + +  + GH   V  +    D   I +G+ D  +K
Sbjct: 305 R---DRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCI--RFDNKRIVSGAYDGKIK 359
Query: 269 LWD----LNMRA-----AMQSMTNHTDQVWGVSFRPLGGRVVSVSDDKSISLYEY 314
           +WD    L+ RA      ++++  H+ +V+ + F     ++VS S D +I ++++
Sbjct: 360 VWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQFDEF--QIVSSSHDDTILIWDF 412

>pdb|1P22|A Chain A, Structure Of A Beta-Trcp1-Skp1-Beta-Catenin Complex: Destruction Motif Binding And Lysine Specificity On The Scfbeta-Trcp1 Ubiquitin Ligase Length = 435

Iteration: 1
 Score = 50.4 bits (119), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 29/102 (28%), Positives = 53/102 (51%), Gaps = 4/102 (3%)
Query: 212 DPRVLFSASDDTHVHMYDAEGKSLVTAMSGHASWVLSVDASPDGAAITTGSSDRTVKLWD 271
           D + + S   D  + ++D         ++GH   VL +    D   I TGSSD TV++WD
Sbjct: 142 DDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQY--DERVIITGSSDSTVRVWD 199
Query: 272 LNMRAAMQSMTNHTDQVWGVSFRPLGGRVVSVSDDKSISLYE 313
           +N    + ++ +H + V  + F    G +V+ S D+SI++++
Sbjct: 200 VNTGEMLNTLIHHCEAVLHLRFN--NGMMVTCSKDRSIAVWD 239

>pdb|1VYH|C Chain C, Paf-Ah Holoenzyme: Lis1ALFA2 Length = 410

Iteration: 1
 Score = 86.3 bits (212), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 71/278 (25%), Positives = 120/278 (43%), Gaps = 35/278 (12%)
Query: 57  TGHCLGVVSVAAHPSGIIAASASLDSFVRVFDVDTNASIATLEASPSEVWQMQFDPKGTT 116
           +GH   V  V  HP   +  SAS D+ ++V+D +T     TL+     V  + FD  G  
Sbjct: 105 SGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKL 164
Query: 117 LAVAGGGSASVKLWDTATWNLIATLSIPRPEGLKPTDKSSSKKFVLSVAWSPDGRRIACG 176
           LA +     ++KLWD   +  I T+                   V SV+  P+G  I   
Sbjct: 165 LA-SCSADMTIKLWDFQGFECIRTMH-------------GHDHNVSSVSIMPNGDHIVSA 210
Query: 177 SMDGTISVFDVTRAKFLHHLEGHFMPVRSLVYSPVDPRVLFSASDDTHVHMYDAEGKSLV 236
           S D TI +++V     +    GH   VR +V    D  ++ S S+D  V ++    K   
Sbjct: 211 SRDKTIKMWEVQTGYCVKTFTGHREWVR-MVRPNQDGTLIASCSNDQTVRVWVVATKECK 269
Query: 237 TAMSGHASWVLSVDASPD--------------------GAAITTGSSDRTVKLWDLNMRA 276
             +  H   V  +  +P+                    G  + +GS D+T+K+WD++   
Sbjct: 270 AELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGM 329
Query: 277 AMQSMTNHTDQVWGVSFRPLGGRVVSVSDDKSISLYEY 314
            + ++  H + V GV F   G  ++S +DDK++ +++Y
Sbjct: 330 CLMTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDY 367

>pdb|1VYH|C Chain C, Paf-Ah Holoenzyme: Lis1ALFA2 Length = 410

Iteration: 1
 Score = 70.1 bits (170), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 39/118 (33%), Positives = 60/118 (50%), Gaps = 1/118 (0%)
Query: 196 LEGHFMPVRSLVYSPVDPRVLFSASDDTHVHMYDAEGKSLVTAMSGHASWVLSVDASPDG 255
           L GH  PV  +++ PV   V+ SAS+D  + ++D E       + GH   V  +     G
Sbjct: 104 LSGHRSPVTRVIFHPVFS-VMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSG 162
Query: 256 AAITTGSSDRTVKLWDLNMRAAMQSMTNHTDQVWGVSFRPLGGRVVSVSDDKSISLYE 313
             + + S+D T+KLWD      +++M  H   V  VS  P G  +VS S DK+I ++E
Sbjct: 163 KLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWE 220

>pdb|1ERJ|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1 Length = 393

Iteration: 1
 Score = 85.1 bits (209), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 72/231 (31%), Positives = 110/231 (47%), Gaps = 31/231 (13%)
Query: 103 SEVWQMQFDPKGTTLAVAGGGSASVKLWDTATWNLIATLS-----IPRPEGLKPTDKSSS 157
           S V  ++F   G  LA   G + + +++  +  +L+A LS        PE L  +   SS
Sbjct: 65  SVVCCVKFSNDGEYLAT--GCNKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSS 122
Query: 158 KKFVLSVAWSPDGRRIACGSMDGTISVFDVTRAKFLHHLEGHFMPVRSLVYSPVDPRVLF 217
             ++ SV +SPDG+ +A G+ D  I ++D+   K +  L+GH   + SL Y P   + L 
Sbjct: 123 DLYIRSVCFSPDGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDK-LV 181
Query: 218 SASDDTHVHMYDAEGKSLVTAMSGHASWVLSVD-------ASP-DGAAITTGSSDRTVKL 269
           S S D  V ++D          +G  S  LS++        SP DG  I  GS DR V++
Sbjct: 182 SGSGDRTVRIWDLR--------TGQCSLTLSIEDGVTTVAVSPGDGKYIAAGSLDRAVRV 233
Query: 270 WD-------LNMRAAMQSMTNHTDQVWGVSFRPLGGRVVSVSDDKSISLYE 313
           WD         + +  +S T H D V+ V F   G  VVS S D+S+ L+ 
Sbjct: 234 WDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWN 284

>pdb|3FM0|A Chain A, Crystal Structure Of Wd40 Protein Ciao1 Length = 345

Iteration: 1
 Score = 78.6 bits (192), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 62/219 (28%), Positives = 106/219 (48%), Gaps = 23/219 (10%)
Query: 103 SEVWQMQFDPKGTTLAVAGGGSASVKLWDTA--TWNLIATLSIPRPEGLKPTDKSSSKKF 160
           S  W + ++P GT LA + GG   +++W T   +W   + LS    EG + T        
Sbjct: 17  SRCWFLAWNPAGTLLA-SCGGDRRIRIWGTEGDSWICKSVLS----EGHQRT-------- 63
Query: 161 VLSVAWSPDGRRIACGSMDGTISVFDVTRAKF--LHHLEGHFMPVRSLVYSPVDPRVLFS 218
           V  VAWSP G  +A  S D T  ++   +  F  +  LEGH   V+S+ ++P    +L +
Sbjct: 64  VRKVAWSPCGNYLASASFDATTCIWKKNQDDFECVTTLEGHENEVKSVAWAP-SGNLLAT 122
Query: 219 ASDDTHVHMYDAEGK---SLVTAMSGHASWVLSVDASPDGAAITTGSSDRTVKLW--DLN 273
            S D  V +++ + +     V+ ++ H   V  V   P    + + S D TVKL+  + +
Sbjct: 123 CSRDKSVWVWEVDEEDEYECVSVLNSHTQDVKHVVWHPSQELLASASYDDTVKLYREEED 182
Query: 274 MRAAMQSMTNHTDQVWGVSFRPLGGRVVSVSDDKSISLY 312
                 ++  H   VW ++F P G R+ S SDD+++ ++
Sbjct: 183 DWVCCATLEGHESTVWSLAFDPSGQRLASCSDDRTVRIW 221

>pdb|3ZEY|7 Chain 7, High-resolution Cryo-electron Microscopy Structure Of The Trypanosoma Brucei Ribosome Length = 318

Iteration: 1
 Score = 76.6 bits (187), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 65/253 (25%), Positives = 114/253 (45%), Gaps = 27/253 (10%)
Query: 34  LTGSLDETVKLWRPDDMQLERTNTGHCLGVVSVAAHPSGIIAASASLDSFVRVFDVDTNA 93
           ++ S D +++LW   + Q +    GH   V+SVA  P      S   D+ +RV++V    
Sbjct: 83  VSASWDHSLRLWNLQNGQCQYKFLGHTKDVLSVAFSPDNRQIVSGGRDNALRVWNVKGEC 142
Query: 94  SIATLEASPSEVW--QMQFDPK-GTTLAVAGGGSASVKLWDTATWNLIATLSIPRPEGLK 150
            + TL       W   ++F P     + V+GG    VK+WD AT  L+            
Sbjct: 143 -MHTLSRGAHTDWVSCVRFSPSLDAPVIVSGGWDNLVKVWDLATGRLV------------ 189
Query: 151 PTDKSSSKKFVLSVAWSPDGRRIACGSMDGTISVFDVTRAKFLHHLEGHFMPVRSLVYSP 210
            TD      +V SV  SPDG   A    DG   ++D+T+ + L  +     P+  + +SP
Sbjct: 190 -TDLKGHTNYVTSVTVSPDGSLCASSDKDGVARLWDLTKGEALSEMAAG-APINQICFSP 247
Query: 211 VDPRVLFSASDDTHVHMYDAEGKSLVTAMS----GHASWV---LSVDASPDGAAITTGSS 263
              R    A+ +  + ++D E K ++  ++    G    V   +S+  S DG+ + +G +
Sbjct: 248 --NRYWMCAATEKGIRIFDLENKDIIVELAPEHQGSKKIVPECVSIAWSADGSTLYSGYT 305
Query: 264 DRTVKLWDLNMRA 276
           D  +++W ++  A
Sbjct: 306 DNVIRVWGVSENA 318

>pdb|3ZEY|7 Chain 7, High-resolution Cryo-electron Microscopy Structure Of The Trypanosoma Brucei Ribosome Length = 318

Iteration: 1
 Score = 41.2 bits (95), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 43/161 (26%), Positives = 68/161 (42%), Gaps = 17/161 (10%)
Query: 138 IATLSIPR-PEGLKPTDKSSSKKFVLSVAWSPDGRRIACGSMDGTISVFDVTRAKFLHHL 196
           + +L+ P+ PE       +S  K +LS   +PD     C     +  + D         L
Sbjct: 16  VTSLACPQTPETATKVVSTSRDKTLLSWGPNPDRHSSEC-----SYGLPD-------RRL 63
Query: 197 EGHFMPVRSLVYSPVDPRVLFSASDDTHVHMYDAEGKSLVTAMSGHASWVLSVDASPDGA 256
           EGH   V  +  S  +     SAS D  + +++ +         GH   VLSV  SPD  
Sbjct: 64  EGHSAFVSDVALSN-NGNFAVSASWDHSLRLWNLQNGQCQYKFLGHTKDVLSVAFSPDNR 122
Query: 257 AITTGSSDRTVKLWDLNMRAAMQSMTN--HTDQVWGVSFRP 295
            I +G  D  +++W++     M +++   HTD V  V F P
Sbjct: 123 QIVSGGRDNALRVWNVKGE-CMHTLSRGAHTDWVSCVRFSP 162

>pdb|1GG2|B Chain B, G Protein Heterotrimer Mutant Gi_alpha_1(G203a) Beta_1 Gamma_2 With Gdp Bound Length = 340

Iteration: 1
 Score = 73.9 bits (180), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 54/221 (24%), Positives = 103/221 (46%), Gaps = 20/221 (9%)
Query: 97  TLEASPSEVWQMQFDPKGTTLAVAGGGSASVKLWDTATWNLIATLSIPRPEGLKPTDKSS 156
           TL    ++++ M +    + L V+      + +WD+ T N +  + +          +SS
Sbjct: 50  TLRGHLAKIYAMHWGTD-SRLLVSASQDGKLIIWDSYTTNKVHAIPL----------RSS 98
Query: 157 SKKFVLSVAWSPDGRRIACGSMDGTISVFDV-TR---AKFLHHLEGHFMPVRSLVYSPVD 212
              +V++ A++P G  +ACG +D   S++++ TR    +    L GH   +    +  +D
Sbjct: 99  ---WVMTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRF--LD 153
Query: 213 PRVLFSASDDTHVHMYDAEGKSLVTAMSGHASWVLSVDASPDGAAITTGSSDRTVKLWDL 272
              + ++S DT   ++D E     T  +GH   V+S+  +PD     +G+ D + KLWD+
Sbjct: 154 DNQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDV 213
Query: 273 NMRAAMQSMTNHTDQVWGVSFRPLGGRVVSVSDDKSISLYE 313
                 Q+ T H   +  + F P G    + SDD +  L++
Sbjct: 214 REGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFD 254

>pdb|2BCJ|B Chain B, Crystal Structure Of G Protein-coupled Receptor Kinase 2 In Complex With Galpha-q And Gbetagamma Subunits Length = 340

Iteration: 1
 Score = 73.9 bits (180), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 54/221 (24%), Positives = 103/221 (46%), Gaps = 20/221 (9%)
Query: 97  TLEASPSEVWQMQFDPKGTTLAVAGGGSASVKLWDTATWNLIATLSIPRPEGLKPTDKSS 156
           TL    ++++ M +    + L V+      + +WD+ T N +  + +          +SS
Sbjct: 50  TLRGHLAKIYAMHWGTD-SRLLVSASQDGKLIIWDSYTTNKVHAIPL----------RSS 98
Query: 157 SKKFVLSVAWSPDGRRIACGSMDGTISVFDV-TR---AKFLHHLEGHFMPVRSLVYSPVD 212
              +V++ A++P G  +ACG +D   S++++ TR    +    L GH   +    +  +D
Sbjct: 99  ---WVMTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRF--LD 153
Query: 213 PRVLFSASDDTHVHMYDAEGKSLVTAMSGHASWVLSVDASPDGAAITTGSSDRTVKLWDL 272
              + ++S DT   ++D E     T  +GH   V+S+  +PD     +G+ D + KLWD+
Sbjct: 154 DNQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDV 213
Query: 273 NMRAAMQSMTNHTDQVWGVSFRPLGGRVVSVSDDKSISLYE 313
                 Q+ T H   +  + F P G    + SDD +  L++
Sbjct: 214 REGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFD 254

>pdb|3SN6|B Chain B, Crystal Structure Of The Beta2 Adrenergic Receptor-Gs Protein Complex Length = 351

Iteration: 1
 Score = 73.6 bits (179), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 54/221 (24%), Positives = 103/221 (46%), Gaps = 20/221 (9%)
Query: 97  TLEASPSEVWQMQFDPKGTTLAVAGGGSASVKLWDTATWNLIATLSIPRPEGLKPTDKSS 156
           TL    ++++ M +    + L V+      + +WD+ T N +  + +          +SS
Sbjct: 61  TLRGHLAKIYAMHWGTD-SRLLVSASQDGKLIIWDSYTTNKVHAIPL----------RSS 109
Query: 157 SKKFVLSVAWSPDGRRIACGSMDGTISVFDV-TR---AKFLHHLEGHFMPVRSLVYSPVD 212
              +V++ A++P G  +ACG +D   S++++ TR    +    L GH   +    +  +D
Sbjct: 110 ---WVMTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRF--LD 164
Query: 213 PRVLFSASDDTHVHMYDAEGKSLVTAMSGHASWVLSVDASPDGAAITTGSSDRTVKLWDL 272
              + ++S DT   ++D E     T  +GH   V+S+  +PD     +G+ D + KLWD+
Sbjct: 165 DNQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDV 224
Query: 273 NMRAAMQSMTNHTDQVWGVSFRPLGGRVVSVSDDKSISLYE 313
                 Q+ T H   +  + F P G    + SDD +  L++
Sbjct: 225 REGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFD 265

>pdb|1GOT|B Chain B, Heterotrimeric Complex Of A Gt-AlphaGI-Alpha Chimera And The Gt-Beta-Gamma Subunits Length = 340

Iteration: 1
 Score = 72.8 bits (177), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 53/221 (23%), Positives = 103/221 (46%), Gaps = 20/221 (9%)
Query: 97  TLEASPSEVWQMQFDPKGTTLAVAGGGSASVKLWDTATWNLIATLSIPRPEGLKPTDKSS 156
           TL    ++++ M +    + L ++      + +WD+ T N +  + +          +SS
Sbjct: 50  TLRGHLAKIYAMHWGTD-SRLLLSASQDGKLIIWDSYTTNKVHAIPL----------RSS 98
Query: 157 SKKFVLSVAWSPDGRRIACGSMDGTISVFDV-TR---AKFLHHLEGHFMPVRSLVYSPVD 212
              +V++ A++P G  +ACG +D   S++++ TR    +    L GH   +    +  +D
Sbjct: 99  ---WVMTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRF--LD 153
Query: 213 PRVLFSASDDTHVHMYDAEGKSLVTAMSGHASWVLSVDASPDGAAITTGSSDRTVKLWDL 272
              + ++S DT   ++D E     T  +GH   V+S+  +PD     +G+ D + KLWD+
Sbjct: 154 DNQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDV 213
Query: 273 NMRAAMQSMTNHTDQVWGVSFRPLGGRVVSVSDDKSISLYE 313
                 Q+ T H   +  + F P G    + SDD +  L++
Sbjct: 214 REGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFD 254

>pdb|1A0R|B Chain B, Heterotrimeric Complex Of PhosducinTRANSDUCIN BETA-Gamma Length = 340

Iteration: 1
 Score = 72.8 bits (177), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 53/221 (23%), Positives = 103/221 (46%), Gaps = 20/221 (9%)
Query: 97  TLEASPSEVWQMQFDPKGTTLAVAGGGSASVKLWDTATWNLIATLSIPRPEGLKPTDKSS 156
           TL    ++++ M +    + L ++      + +WD+ T N +  + +          +SS
Sbjct: 50  TLRGHLAKIYAMHWGTD-SRLLLSASQDGKLIIWDSYTTNKVHAIPL----------RSS 98
Query: 157 SKKFVLSVAWSPDGRRIACGSMDGTISVFDV-TR---AKFLHHLEGHFMPVRSLVYSPVD 212
              +V++ A++P G  +ACG +D   S++++ TR    +    L GH   +    +  +D
Sbjct: 99  ---WVMTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRF--LD 153
Query: 213 PRVLFSASDDTHVHMYDAEGKSLVTAMSGHASWVLSVDASPDGAAITTGSSDRTVKLWDL 272
              + ++S DT   ++D E     T  +GH   V+S+  +PD     +G+ D + KLWD+
Sbjct: 154 DNQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDV 213
Query: 273 NMRAAMQSMTNHTDQVWGVSFRPLGGRVVSVSDDKSISLYE 313
                 Q+ T H   +  + F P G    + SDD +  L++
Sbjct: 214 REGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFD 254

>pdb|2PBI|B Chain B, The Multifunctional Nature Of Gbeta5RGS9 REVEALED FROM ITS CRYSTAL Structure Length = 354

Iteration: 1
 Score = 72.0 bits (175), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 57/225 (25%), Positives = 100/225 (44%), Gaps = 23/225 (10%)
Query: 97  TLEASPSEVWQMQFDPKGTTLAVAGGGSASVKLWDTATWNLIATLSIPRPEGLKPTDKSS 156
           TL+   ++V  M +  K     V+      V +WD+ T N    +++P            
Sbjct: 59  TLKGHGNKVLCMDW-CKDKRRIVSSSQDGKVIVWDSFTTNKEHAVTMPCT---------- 107
Query: 157 SKKFVLSVAWSPDGRRIACGSMDGTISVFDVTRAKFLH------HLEGHFMPVRSLVYSP 210
              +V++ A++P G  IACG +D   SV+ +T  K  +       +  H   + +  ++ 
Sbjct: 108 ---WVMACAYAPSGCAIACGGLDNKCSVYPLTFDKNENMAAKKKSVAMHTNYLSACSFTN 164
Query: 211 VDPRVLFSASDDTHVHMYDAEGKSLVTAMSGHASWVLSVDASPD--GAAITTGSSDRTVK 268
            D ++L +AS D    ++D E   L+ +  GH + VL +D +P   G    +G  D+   
Sbjct: 165 SDMQIL-TASGDGTCALWDVESGQLLQSFHGHGADVLCLDLAPSETGNTFVSGGCDKKAM 223
Query: 269 LWDLNMRAAMQSMTNHTDQVWGVSFRPLGGRVVSVSDDKSISLYE 313
           +WD+     +Q+   H   V  V + P G    S SDD +  LY+
Sbjct: 224 VWDMRSGQCVQAFETHESDVNSVRYYPSGDAFASGSDDATCRLYD 268

>pdb|2YNO|A Chain A, Yeast Betaprime Cop 1-304h6 Length = 310

Iteration: 1
 Score = 55.8 bits (133), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 54/270 (20%), Positives = 111/270 (41%), Gaps = 18/270 (6%)
Query: 50  MQLERTNTGHCLGVVSVAAHPSGIIAASASLDSFVRVFDVDTNASIATLEASPSEVWQMQ 109
           + +++T +     V  +  HP+     +      V +++ +T   + +++ + + V   +
Sbjct: 3   LDIKKTFSNRSDRVKGIDFHPTEPWVLTTLYSGRVELWNYETQVEVRSIQVTETPVRAGK 62
Query: 110 FDPKGTTLAVAGGGSASVKLWDTATWNLIATLSIPRPEGLKPTDKSSSKKFVLSVAWSPD 169
           F  +   + V G     +++++  T             G K  D  +   ++ S+A  P 
Sbjct: 63  FIARKNWIIV-GSDDFRIRVFNYNT-------------GEKVVDFEAHPDYIRSIAVHPT 108
Query: 170 GRRIACGSMDGTISVFDVTRAKFLHH-LEGHFMPVRSLVYSPVDPRVLFSASDDTHVHMY 228
              +  GS D T+ +++      L    EGH   V  + ++P DP    S   D  V ++
Sbjct: 109 KPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVW 168
Query: 229 D-AEGKSLVTAMSGHASWVLSVDASP--DGAAITTGSSDRTVKLWDLNMRAAMQSMTNHT 285
              +     T  +G    V  VD  P  D   + T S D T+K+WD   ++ + ++  H 
Sbjct: 169 SLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHM 228
Query: 286 DQVWGVSFRPLGGRVVSVSDDKSISLYEYS 315
             V    F P    ++S S+D ++ ++  S
Sbjct: 229 SNVSFAVFHPTLPIIISGSEDGTLKIWNSS 258

>pdb|2YNN|A Chain A, Yeast Betaprime Cop 1-304 With Ktktn Motif Length = 304

Iteration: 1
 Score = 55.8 bits (133), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 54/270 (20%), Positives = 111/270 (41%), Gaps = 18/270 (6%)
Query: 50  MQLERTNTGHCLGVVSVAAHPSGIIAASASLDSFVRVFDVDTNASIATLEASPSEVWQMQ 109
           + +++T +     V  +  HP+     +      V +++ +T   + +++ + + V   +
Sbjct: 3   LDIKKTFSNRSDRVKGIDFHPTEPWVLTTLYSGRVELWNYETQVEVRSIQVTETPVRAGK 62
Query: 110 FDPKGTTLAVAGGGSASVKLWDTATWNLIATLSIPRPEGLKPTDKSSSKKFVLSVAWSPD 169
           F  +   + V G     +++++  T             G K  D  +   ++ S+A  P 
Sbjct: 63  FIARKNWIIV-GSDDFRIRVFNYNT-------------GEKVVDFEAHPDYIRSIAVHPT 108
Query: 170 GRRIACGSMDGTISVFDVTRAKFLHH-LEGHFMPVRSLVYSPVDPRVLFSASDDTHVHMY 228
              +  GS D T+ +++      L    EGH   V  + ++P DP    S   D  V ++
Sbjct: 109 KPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVW 168
Query: 229 D-AEGKSLVTAMSGHASWVLSVDASP--DGAAITTGSSDRTVKLWDLNMRAAMQSMTNHT 285
              +     T  +G    V  VD  P  D   + T S D T+K+WD   ++ + ++  H 
Sbjct: 169 SLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHM 228
Query: 286 DQVWGVSFRPLGGRVVSVSDDKSISLYEYS 315
             V    F P    ++S S+D ++ ++  S
Sbjct: 229 SNVSFAVFHPTLPIIISGSEDGTLKIWNSS 258

>pdb|2YNP|A Chain A, Yeast Betaprime Cop 1-604 With Ktktn Motif Length = 604

Iteration: 1
 Score = 53.9 bits (128), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 54/270 (20%), Positives = 111/270 (41%), Gaps = 18/270 (6%)
Query: 50  MQLERTNTGHCLGVVSVAAHPSGIIAASASLDSFVRVFDVDTNASIATLEASPSEVWQMQ 109
           + +++T +     V  +  HP+     +      V +++ +T   + +++ + + V   +
Sbjct: 3   LDIKKTFSNRSDRVKGIDFHPTEPWVLTTLYSGRVELWNYETQVEVRSIQVTETPVRAGK 62
Query: 110 FDPKGTTLAVAGGGSASVKLWDTATWNLIATLSIPRPEGLKPTDKSSSKKFVLSVAWSPD 169
           F  +   + V G     +++++  T             G K  D  +   ++ S+A  P 
Sbjct: 63  FIARKNWIIV-GSDDFRIRVFNYNT-------------GEKVVDFEAHPDYIRSIAVHPT 108
Query: 170 GRRIACGSMDGTISVFDVTRAKFLHH-LEGHFMPVRSLVYSPVDPRVLFSASDDTHVHMY 228
              +  GS D T+ +++      L    EGH   V  + ++P DP    S   D  V ++
Sbjct: 109 KPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVW 168
Query: 229 D-AEGKSLVTAMSGHASWVLSVDASP--DGAAITTGSSDRTVKLWDLNMRAAMQSMTNHT 285
              +     T  +G    V  VD  P  D   + T S D T+K+WD   ++ + ++  H 
Sbjct: 169 SLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHM 228
Query: 286 DQVWGVSFRPLGGRVVSVSDDKSISLYEYS 315
             V    F P    ++S S+D ++ ++  S
Sbjct: 229 SNVSFAVFHPTLPIIISGSEDGTLKIWNSS 258

>pdb|3MKQ|A Chain A, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex Of The Copi Vesicular Coat Length = 814

Iteration: 1
 Score = 53.5 bits (127), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 54/270 (20%), Positives = 111/270 (41%), Gaps = 18/270 (6%)
Query: 50  MQLERTNTGHCLGVVSVAAHPSGIIAASASLDSFVRVFDVDTNASIATLEASPSEVWQMQ 109
           + +++T +     V  +  HP+     +      V +++ +T   + +++ + + V   +
Sbjct: 3   LDIKKTFSNRSDRVKGIDFHPTEPWVLTTLYSGRVEIWNYETQVEVRSIQVTETPVRAGK 62
Query: 110 FDPKGTTLAVAGGGSASVKLWDTATWNLIATLSIPRPEGLKPTDKSSSKKFVLSVAWSPD 169
           F  +   + V G     +++++  T             G K  D  +   ++ S+A  P 
Sbjct: 63  FIARKNWIIV-GSDDFRIRVFNYNT-------------GEKVVDFEAHPDYIRSIAVHPT 108
Query: 170 GRRIACGSMDGTISVFDVTRAKFLHH-LEGHFMPVRSLVYSPVDPRVLFSASDDTHVHMY 228
              +  GS D T+ +++      L    EGH   V  + ++P DP    S   D  V ++
Sbjct: 109 KPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVW 168
Query: 229 D-AEGKSLVTAMSGHASWVLSVDASP--DGAAITTGSSDRTVKLWDLNMRAAMQSMTNHT 285
              +     T  +G    V  VD  P  D   + T S D T+K+WD   ++ + ++  H 
Sbjct: 169 SLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHM 228
Query: 286 DQVWGVSFRPLGGRVVSVSDDKSISLYEYS 315
             V    F P    ++S S+D ++ ++  S
Sbjct: 229 SNVSFAVFHPTLPIIISGSEDGTLKIWNSS 258

>pdb|3IZ6|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into A 5.5 A Cryo-Em Map Of Triticum Aestivum Translating 80s Ribosome Length = 380

Iteration: 1
 Score = 69.3 bits (168), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 70/312 (22%), Positives = 116/312 (37%), Gaps = 57/312 (18%)
Query: 12  AHEESVWAVTWVPATETRPALLLTGSLDETVKLWRPDDMQLERTNTGHCLGVVSVAAHPS 71
            H   V+++ W P        +++ S D  + +W     Q       HC  V+  A  P+
Sbjct: 64  GHSGKVYSLDWTPEKN----WIVSASQDGRLIVWNALTSQKTHAIKLHCPWVMECAFAPN 119
Query: 72  GIIAASASLDSFVRVF------DVDTNASIA-TLEASPSEVWQMQFDPKGTTLAVAGGGS 124
           G   A   LDS   +F      D D N  ++  L          Q+ P   T  + G G 
Sbjct: 120 GQSVACGGLDSACSIFNLSSQADRDGNMPVSRVLTGHKGYASSCQYVPDQETRLITGSGD 179
Query: 125 ASVKLWDTATWNLIATLSIPRPEG-------------------------------LKPTD 153
            +  LWD  T   I+      P G                               L+ T 
Sbjct: 180 QTCVLWDVTTGQRISIFGSEFPSGHTADVLSLSINSLNANMFISGSCDTTVRLWDLRITS 239
Query: 154 KS-----SSKKFVLSVAWSPDGRRIACGSMDGTISVFDVTRAKFLH------HLEGHFMP 202
           ++       +  + SV + PDG+R   GS DGT  +FD+     L           + +P
Sbjct: 240 RAVRTYHGHEGDINSVKFFPDGQRFGTGSDDGTCRLFDMRTGHQLQVYNREPDRNDNELP 299
Query: 203 VRSLVYSPVDPRVLFSASDDTHVHMYDAEGKSLV----TAMSGHASWVLSVDASPDGAAI 258
           + + V   +  R+LF+   +   +++D     +V    T  + H   +  +  S DG+A+
Sbjct: 300 IVTSVAFSISGRLLFAGYSNGDCYVWDTLLAEMVLNLGTLQNSHEGRISCLGLSSDGSAL 359
Query: 259 TTGSSDRTVKLW 270
            TGS D+ +K+W
Sbjct: 360 CTGSWDKNLKIW 371

>pdb|3IZ6|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into A 5.5 A Cryo-Em Map Of Triticum Aestivum Translating 80s Ribosome Length = 380

Iteration: 1
 Score = 64.7 bits (156), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 47/167 (28%), Positives = 78/167 (46%), Gaps = 14/167 (8%)
Query: 161 VLSVAWSPDGRRIACGSMDGTISVFDVT-------RAKFLHHLEGHFMPVRSLVYSPVDP 213
           V+  A++P+G+ +ACG +D   S+F+++              L GH     S  Y P   
Sbjct: 111 VMECAFAPNGQSVACGGLDSACSIFNLSSQADRDGNMPVSRVLTGHKGYASSCQYVPDQE 170
Query: 214 RVLFSASDDTHVHMYDAEGKSLVTAM-----SGHASWVLSVD-ASPDGAAITTGSSDRTV 267
             L + S D    ++D      ++       SGH + VLS+   S +     +GS D TV
Sbjct: 171 TRLITGSGDQTCVLWDVTTGQRISIFGSEFPSGHTADVLSLSINSLNANMFISGSCDTTV 230
Query: 268 KLWDLNMRA-AMQSMTNHTDQVWGVSFRPLGGRVVSVSDDKSISLYE 313
           +LWDL + + A+++   H   +  V F P G R  + SDD +  L++
Sbjct: 231 RLWDLRITSRAVRTYHGHEGDINSVKFFPDGQRFGTGSDDGTCRLFD 277

>pdb|1GXR|A Chain A, Wd40 Region Of Human Groucho/tle1 Length = 337

Iteration: 1
 Score = 66.6 bits (161), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 51/187 (27%), Positives = 78/187 (41%), Gaps = 18/187 (9%)
Query: 116 TLAVAGGGSASVKLWDTATWNLIATLSIPRPEGLKPT---DKSSSKKFVLSVAWSPDGRR 172
           T  V  GG   VK+WD           I  P    P    D  +   ++ S    PDG  
Sbjct: 63  TRHVYTGGKGCVKVWD-----------ISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCT 111
Query: 173 IACGSMDGTISVFDVT--RAKFLHHLEGHFMPVRSLVYSPVDPRVLFSASDDTHVHMYDA 230
           +  G    T+S++D+     +    L        +L  SP D +V FS   D ++ ++D 
Sbjct: 112 LIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISP-DSKVCFSCCSDGNIAVWDL 170
Query: 231 EGKSLVTAMSGHASWVLSVDASPDGAAITTGSSDRTVKLWDLNMRAAMQSMTNHTDQVWG 290
             ++LV    GH      +D S DG  + TG  D TV+ WDL     +Q   + T Q++ 
Sbjct: 171 HNQTLVRQFQGHTDGASCIDISNDGTKLWTGGLDNTVRSWDLREGRQLQQH-DFTSQIFS 229
Query: 291 VSFRPLG 297
           + + P G
Sbjct: 230 LGYCPTG 236

>pdb|2ZKQ|AA Chain a, Structure Of A Mammalian Ribosomal 40s Subunit Within An 80s Complex Obtained By Docking Homology Models Of The Rna And Proteins Into An 8.7 A Cryo-Em Map Length = 317

Iteration: 1
 Score = 65.9 bits (159), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 64/252 (25%), Positives = 107/252 (42%), Gaps = 27/252 (10%)
Query: 34  LTGSLDETVKLWRPDDMQLERTNTGHCLGVVSVAAHPSGIIAASASLDSFVRVFDVDTNA 93
           L+GS D T++LW        R   GH   V+SVA         S S D  +++++     
Sbjct: 79  LSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWNTLGVC 138
Query: 94  SIATLEASPSE-VWQMQFDPKGTT-LAVAGGGSASVKLWDTATWNLIATLSIPRPEGLKP 151
                + S SE V  ++F P  +  + V+ G    VK+W+ A   L              
Sbjct: 139 KYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCKL-------------K 185
Query: 152 TDKSSSKKFVLSVAWSPDGRRIACGSMDGTISVFDVTRAKFLHHLEGHFMPVRSLVYSPV 211
           T+      ++ +V  SPDG   A G  DG   ++D+   K L+ L+G  + + +L +SP 
Sbjct: 186 TNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGKHLYTLDGGDI-INALCFSP- 243
Query: 212 DPRVLFSASDDTHVHMYDAEGKSLV---------TAMSGHASWVLSVDASPDGAAITTGS 262
             R    A+    + ++D EGK +V         T+         S+  S DG  +  G 
Sbjct: 244 -NRYWLCAATGPSIKIWDLEGKIIVDELKQEVISTSSKAEPPQCTSLAWSADGQTLFAGY 302
Query: 263 SDRTVKLWDLNM 274
           +D  V++W + +
Sbjct: 303 TDNLVRVWQVTI 314

>pdb|2ZKQ|AA Chain a, Structure Of A Mammalian Ribosomal 40s Subunit Within An 80s Complex Obtained By Docking Homology Models Of The Rna And Proteins Into An 8.7 A Cryo-Em Map Length = 317

Iteration: 1
 Score = 60.5 bits (145), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 47/159 (29%), Positives = 71/159 (44%), Gaps = 15/159 (9%)
Query: 117 LAVAGGGSASVKLWDTATWNLIATLSIPRPEGLKPTDKSSSKKFVLSVAWSPDGRRIACG 176
            A++G    +++LWD  T             G          K VLSVA+S D R+I  G
Sbjct: 77  FALSGSWDGTLRLWDLTT-------------GTTTRRFVGHTKDVLSVAFSSDNRQIVSG 123
Query: 177 SMDGTISVFD-VTRAKFLHHLEGHFMPVRSLVYSPVDPR-VLFSASDDTHVHMYDAEGKS 234
           S D TI +++ +   K+    E H   V  + +SP     ++ S   D  V +++     
Sbjct: 124 SRDKTIKLWNTLGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCK 183
Query: 235 LVTAMSGHASWVLSVDASPDGAAITTGSSDRTVKLWDLN 273
           L T   GH  ++ +V  SPDG+   +G  D    LWDLN
Sbjct: 184 LKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLN 222

>pdb|2ZKQ|AA Chain a, Structure Of A Mammalian Ribosomal 40s Subunit Within An 80s Complex Obtained By Docking Homology Models Of The Rna And Proteins Into An 8.7 A Cryo-Em Map Length = 317

Iteration: 1
 Score = 56.2 bits (134), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 45/159 (28%), Positives = 70/159 (44%), Gaps = 4/159 (2%)
Query: 160 FVLSVAWSPDGRRIACGSMDGTISVFDVTRAKFLHHLEGHFMPVRSLVYSPVDPRVLFSA 219
           FV  V  S DG+    GS DGT+ ++D+T         GH   V S+ +S  D R + S 
Sbjct: 65  FVSDVVISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSS-DNRQIVSG 123
Query: 220 SDDTHVHMYDAEGKSLVTAM-SGHASWVLSVDASPDGA--AITTGSSDRTVKLWDLNMRA 276
           S D  + +++  G    T     H+ WV  V  SP+ +   I +   D+ VK+W+L    
Sbjct: 124 SRDKTIKLWNTLGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCK 183
Query: 277 AMQSMTNHTDQVWGVSFRPLGGRVVSVSDDKSISLYEYS 315
              +   HT  +  V+  P G    S   D    L++ +
Sbjct: 184 LKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLN 222

>pdb|4AOW|A Chain A, Crystal Structure Of The Human Rack1 Protein At A Resolution Of 2.45 Angstrom Length = 340

Iteration: 1
 Score = 65.5 bits (158), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 64/252 (25%), Positives = 107/252 (42%), Gaps = 27/252 (10%)
Query: 34  LTGSLDETVKLWRPDDMQLERTNTGHCLGVVSVAAHPSGIIAASASLDSFVRVFDVDTNA 93
           L+GS D T++LW        R   GH   V+SVA         S S D  +++++     
Sbjct: 102 LSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWNTLGVC 161
Query: 94  SIATLEASPSE-VWQMQFDPKGTT-LAVAGGGSASVKLWDTATWNLIATLSIPRPEGLKP 151
                + S SE V  ++F P  +  + V+ G    VK+W+ A   L              
Sbjct: 162 KYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCKL-------------K 208
Query: 152 TDKSSSKKFVLSVAWSPDGRRIACGSMDGTISVFDVTRAKFLHHLEGHFMPVRSLVYSPV 211
           T+      ++ +V  SPDG   A G  DG   ++D+   K L+ L+G  + + +L +SP 
Sbjct: 209 TNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGKHLYTLDGGDI-INALCFSP- 266
Query: 212 DPRVLFSASDDTHVHMYDAEGKSLV---------TAMSGHASWVLSVDASPDGAAITTGS 262
             R    A+    + ++D EGK +V         T+         S+  S DG  +  G 
Sbjct: 267 -NRYWLCAATGPSIKIWDLEGKIIVDELKQEVISTSSKAEPPQCTSLAWSADGQTLFAGY 325
Query: 263 SDRTVKLWDLNM 274
           +D  V++W + +
Sbjct: 326 TDNLVRVWQVTI 337

>pdb|4AOW|A Chain A, Crystal Structure Of The Human Rack1 Protein At A Resolution Of 2.45 Angstrom Length = 340

Iteration: 1
 Score = 60.5 bits (145), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 47/159 (29%), Positives = 71/159 (44%), Gaps = 15/159 (9%)
Query: 117 LAVAGGGSASVKLWDTATWNLIATLSIPRPEGLKPTDKSSSKKFVLSVAWSPDGRRIACG 176
            A++G    +++LWD  T             G          K VLSVA+S D R+I  G
Sbjct: 100 FALSGSWDGTLRLWDLTT-------------GTTTRRFVGHTKDVLSVAFSSDNRQIVSG 146
Query: 177 SMDGTISVFD-VTRAKFLHHLEGHFMPVRSLVYSPVDPR-VLFSASDDTHVHMYDAEGKS 234
           S D TI +++ +   K+    E H   V  + +SP     ++ S   D  V +++     
Sbjct: 147 SRDKTIKLWNTLGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCK 206
Query: 235 LVTAMSGHASWVLSVDASPDGAAITTGSSDRTVKLWDLN 273
           L T   GH  ++ +V  SPDG+   +G  D    LWDLN
Sbjct: 207 LKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLN 245

>pdb|4AOW|A Chain A, Crystal Structure Of The Human Rack1 Protein At A Resolution Of 2.45 Angstrom Length = 340

Iteration: 1
 Score = 55.8 bits (133), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 45/159 (28%), Positives = 70/159 (44%), Gaps = 4/159 (2%)
Query: 160 FVLSVAWSPDGRRIACGSMDGTISVFDVTRAKFLHHLEGHFMPVRSLVYSPVDPRVLFSA 219
           FV  V  S DG+    GS DGT+ ++D+T         GH   V S+ +S  D R + S 
Sbjct: 88  FVSDVVISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSS-DNRQIVSG 146
Query: 220 SDDTHVHMYDAEGKSLVTAM-SGHASWVLSVDASPDGA--AITTGSSDRTVKLWDLNMRA 276
           S D  + +++  G    T     H+ WV  V  SP+ +   I +   D+ VK+W+L    
Sbjct: 147 SRDKTIKLWNTLGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCK 206
Query: 277 AMQSMTNHTDQVWGVSFRPLGGRVVSVSDDKSISLYEYS 315
              +   HT  +  V+  P G    S   D    L++ +
Sbjct: 207 LKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLN 245

>pdb|3DM0|A Chain A, Maltose Binding Protein Fusion With Rack1 From A. Thaliana Length = 694

Iteration: 1
 Score = 63.9 bits (154), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 51/178 (28%), Positives = 83/178 (46%), Gaps = 13/178 (7%)
Query: 22  WVPATETRPALL----LTGSLDETVKLWRPDDMQLERTNTGHCLGVVSVAAHPSGIIAAS 77
           WV      P  L    ++ S D+TVK+W   + +L  T  GH   V +VA  P G + AS
Sbjct: 519 WVSCVRFSPNTLQPTIVSASWDKTVKVWNLSNCKLRSTLAGHTGYVSTVAVSPDGSLCAS 578
Query: 78  ASLDSFVRVFDVDTNASIATLEASPSEVWQMQFDPKGTTLAVAGGGSASVKLWDTATWNL 137
              D  V ++D+     + +LEA+ S +  + F P    L  A      +K+WD  + ++
Sbjct: 579 GGKDGVVLLWDLAEGKKLYSLEAN-SVIHALCFSPNRYWLCAA--TEHGIKIWDLESKSI 635
Query: 138 IATLSIPRPEGLKPTDKS---SSKKFVL---SVAWSPDGRRIACGSMDGTISVFDVTR 189
           +  L +      +  D S   ++K+ V+   S+ WS DG  +  G  DG I V+ + R
Sbjct: 636 VEDLKVDLKAEAEKADNSGPAATKRKVIYCTSLNWSADGSTLFSGYTDGVIRVWGIGR 693

>pdb|3DM0|A Chain A, Maltose Binding Protein Fusion With Rack1 From A. Thaliana Length = 694

Iteration: 1
 Score = 62.8 bits (151), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 48/159 (30%), Positives = 74/159 (46%), Gaps = 6/159 (3%)
Query: 160 FVLSVAWSPDGRRIACGSMDGTISVFDVTRAKFLHHLEGHFMPVRSLVYSPVDPRVLFSA 219
           FV  V  S DG+    GS DG + ++D+          GH   V S+ +S +D R + SA
Sbjct: 432 FVEDVVLSSDGQFALSGSWDGELRLWDLAAGVSTRRFVGHTKDVLSVAFS-LDNRQIVSA 490
Query: 220 SDDTHVHMYDAEGKSLVT---AMSGHASWVLSVDASPD--GAAITTGSSDRTVKLWDLNM 274
           S D  + +++  G+   T      GH  WV  V  SP+     I + S D+TVK+W+L+ 
Sbjct: 491 SRDRTIKLWNTLGECKYTISEGGEGHRDWVSCVRFSPNTLQPTIVSASWDKTVKVWNLSN 550
Query: 275 RAAMQSMTNHTDQVWGVSFRPLGGRVVSVSDDKSISLYE 313
                ++  HT  V  V+  P G    S   D  + L++
Sbjct: 551 CKLRSTLAGHTGYVSTVAVSPDGSLCASGGKDGVVLLWD 589

>pdb|3SFZ|A Chain A, Crystal Structure Of Full-Length Murine Apaf-1 Length = 1249

Iteration: 1
 Score = 45.8 bits (107), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 65/329 (19%), Positives = 118/329 (35%), Gaps = 57/329 (17%)
Query: 32   LLLTGSLDETVKLWRPDDMQLERTNTGHCLGVVSVAAHPSGIIAASASLDSFVRVFDVDT 91
            LL TGS D  +KLW  +  +   T  GH   V      P   + AS S D  +R++DV +
Sbjct: 715  LLATGSNDFFLKLWDLNQKECRNTMFGHTNSVNHCRFSPDDELLASCSADGTLRLWDVRS 774
Query: 92   NASIATL---------EASPSEV--------WQMQFDP----------------KGTTLA 118
                 ++         E  P +V        W    D                  G    
Sbjct: 775  ANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAAKNKVLLFDIHTSGLLAE 834
Query: 119  VAGGGSASVKLWDTATWNLIATLSIPR--------PEGLKPTDKSSSKKFVLSVAWSPDG 170
            +  G  ++++  D + ++ +A +++ +           LK  D      +V  V +SPDG
Sbjct: 835  IHTGHHSTIQYCDFSPYDHLAVIALSQYCVELWNIDSRLKVADCRGHLSWVHGVMFSPDG 894
Query: 171  RRIACGSMDGTISVFDVTRAKFLHHLEGHFMPVRSLVYSPVDPRVLFSASDDTHVHMYDA 230
                  S D TI V++  +           +   S +    +  V+F  ++   + + + 
Sbjct: 895  SSFLTASDDQTIRVWETKK-----------VCKNSAIVLKQEIDVVFQENETMVLAVDNI 943
Query: 231  EGKSLVTAMSGHASWVLSVDA-----SPDGAAITTGSSDRTVKLWDLNMRAAMQSMTNHT 285
             G  L+   +G   ++          SP    +  G  D  +K+ +L       S   H 
Sbjct: 944  RGLQLIAGKTGQIDYLPEAQVSCCCLSPHLEYVAFGDEDGAIKIIELPNNRVFSSGVGHK 1003
Query: 286  DQVWGVSFRPLGGRVVSVSDDKSISLYEY 314
              V  + F   G  ++S S+D  I ++ +
Sbjct: 1004 KAVRHIQFTADGKTLISSSEDSVIQVWNW 1032

>pdb|3SFZ|A Chain A, Crystal Structure Of Full-Length Murine Apaf-1 Length = 1249

Iteration: 1
 Score = 60.1 bits (144), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 44/155 (28%), Positives = 69/155 (44%), Gaps = 3/155 (1%)
Query: 161 VLSVAWSPDGRRIACGSMDGTISVFDVTRAKFLHHLEGHFMPVRSLVYSPVDPRVLFSAS 220
           V    +S DG+RIA    D T+ VF     + L  ++ H   V    +S  D   + + S
Sbjct: 618 VYHACFSQDGQRIASCGADKTLQVFKAETGEKLLDIKAHEDEVLCCAFSS-DDSYIATCS 676
Query: 221 DDTHVHMYDAEGKSLVTAMSGHASWV--LSVDASPDGAAITTGSSDRTVKLWDLNMRAAM 278
            D  V ++D+    LV     H+  V         +   + TGS+D  +KLWDLN +   
Sbjct: 677 ADKKVKIWDSATGKLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKECR 736
Query: 279 QSMTNHTDQVWGVSFRPLGGRVVSVSDDKSISLYE 313
            +M  HT+ V    F P    + S S D ++ L++
Sbjct: 737 NTMFGHTNSVNHCRFSPDDELLASCSADGTLRLWD 771

>pdb|4GGC|A Chain A, Structural Analysis Of Human Cdc20 Supports Multi-Site Degron Recognition By ApcC Length = 318

Iteration: 1
 Score = 61.2 bits (147), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 69/264 (26%), Positives = 112/264 (42%), Gaps = 28/264 (10%)
Query: 15  ESVWAVTWVPATETRPALLLTGSLDETVKLWRPDDMQLERTNTGHCLGVVSVAAHPSGII 74
           E + +V W+         L  G+    V+LW     +  R  T H   V S++   +  I
Sbjct: 68  EYISSVAWIKEGN----YLAVGTSSAEVQLWDVQQQKRLRNMTSHSARVGSLSW--NSYI 121
Query: 75  AASASLDSFVRVFDVDT-NASIATLEASPSEVWQMQFDPKGTTLAVAGGGSASVKLWDTA 133
            +S S    +   DV      +ATL     EV  +++ P G  LA +GG    V +W +A
Sbjct: 122 LSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLA-SGGNDNLVNVWPSA 180
Query: 134 TWNLIATLSIPRPEGLKPTDK-SSSKKFVLSVAWSPDGRRI---ACGSMDGTISVFDVTR 189
                     P   G  P    +  +  V +VAW P    +     G+ D  I +++V  
Sbjct: 181 ----------PGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCS 230
Query: 190 AKFLHHLEGHFMPVRSLVYSPVDPRVLFS---ASDDTHVHMYDAEGKSLVTAMSGHASWV 246
              L  ++ H   V S+++SP    ++     A +   +  Y    K  V  + GH S V
Sbjct: 231 GACLSAVDAHSQ-VCSILWSPHYKELISGHGFAQNQLVIWKYPTMAK--VAELKGHTSRV 287
Query: 247 LSVDASPDGAAITTGSSDRTVKLW 270
           LS+  SPDGA + + ++D T++LW
Sbjct: 288 LSLTMSPDGATVASAAADETLRLW 311

>pdb|4GGC|A Chain A, Structural Analysis Of Human Cdc20 Supports Multi-Site Degron Recognition By ApcC Length = 318

Iteration: 1
 Score = 52.0 bits (123), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 53/237 (22%), Positives = 97/237 (40%), Gaps = 38/237 (16%)
Query: 113 KGTTLAVAGGGSASVKLWD------------------TATWNLIATLSIPRPEGLKPTD- 153
           +G  LAV G  SA V+LWD                  + +WN     S  R   +   D 
Sbjct: 78  EGNYLAV-GTSSAEVQLWDVQQQKRLRNMTSHSARVGSLSWNSYILSSGSRSGHIHHHDV 136
Query: 154 ---------KSSSKKFVLSVAWSPDGRRIACGSMDGTISVFDVTRAKF----LHHLEGHF 200
                     S   + V  + W+PDGR +A G  D  ++V+     +     L     H 
Sbjct: 137 RVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQ 196
Query: 201 MPVRSLVYSPVDPRVLFSA--SDDTHVHMYDAEGKSLVTAMSGHASWVLSVDASPDGAAI 258
             V+++ + P    VL +   + D H+ +++    + ++A+  H+  V S+  SP    +
Sbjct: 197 GAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAHSQ-VCSILWSPHYKEL 255
Query: 259 TTGS--SDRTVKLWDLNMRAAMQSMTNHTDQVWGVSFRPLGGRVVSVSDDKSISLYE 313
            +G   +   + +W     A +  +  HT +V  ++  P G  V S + D+++ L+ 
Sbjct: 256 ISGHGFAQNQLVIWKYPTMAKVAELKGHTSRVLSLTMSPDGATVASAAADETLRLWR 312

>pdb|3SHF|A Chain A, Crystal Structure Of The R265s Mutant Of Full-Length Murine Apaf-1 Length = 1256

Iteration: 1
 Score = 45.4 bits (106), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 65/329 (19%), Positives = 118/329 (35%), Gaps = 57/329 (17%)
Query: 32   LLLTGSLDETVKLWRPDDMQLERTNTGHCLGVVSVAAHPSGIIAASASLDSFVRVFDVDT 91
            LL TGS D  +KLW  +  +   T  GH   V      P   + AS S D  +R++DV +
Sbjct: 722  LLATGSNDFFLKLWDLNQKECRNTMFGHTNSVNHCRFSPDDELLASCSADGTLRLWDVRS 781
Query: 92   NASIATL---------EASPSEV--------WQMQFDP----------------KGTTLA 118
                 ++         E  P +V        W    D                  G    
Sbjct: 782  ANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAAKNKVLLFDIHTSGLLAE 841
Query: 119  VAGGGSASVKLWDTATWNLIATLSIPR--------PEGLKPTDKSSSKKFVLSVAWSPDG 170
            +  G  ++++  D + ++ +A +++ +           LK  D      +V  V +SPDG
Sbjct: 842  IHTGHHSTIQYCDFSPYDHLAVIALSQYCVELWNIDSRLKVADCRGHLSWVHGVMFSPDG 901
Query: 171  RRIACGSMDGTISVFDVTRAKFLHHLEGHFMPVRSLVYSPVDPRVLFSASDDTHVHMYDA 230
                  S D TI V++  +           +   S +    +  V+F  ++   + + + 
Sbjct: 902  SSFLTASDDQTIRVWETKK-----------VCKNSAIVLKQEIDVVFQENETMVLAVDNI 950
Query: 231  EGKSLVTAMSGHASWVLSVDA-----SPDGAAITTGSSDRTVKLWDLNMRAAMQSMTNHT 285
             G  L+   +G   ++          SP    +  G  D  +K+ +L       S   H 
Sbjct: 951  RGLQLIAGKTGQIDYLPEAQVSCCCLSPHLEYVAFGDEDGAIKIIELPNNRVFSSGVGHK 1010
Query: 286  DQVWGVSFRPLGGRVVSVSDDKSISLYEY 314
              V  + F   G  ++S S+D  I ++ +
Sbjct: 1011 KAVRHIQFTADGKTLISSSEDSVIQVWNW 1039

>pdb|3SHF|A Chain A, Crystal Structure Of The R265s Mutant Of Full-Length Murine Apaf-1 Length = 1256

Iteration: 1
 Score = 60.1 bits (144), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 44/155 (28%), Positives = 69/155 (44%), Gaps = 3/155 (1%)
Query: 161 VLSVAWSPDGRRIACGSMDGTISVFDVTRAKFLHHLEGHFMPVRSLVYSPVDPRVLFSAS 220
           V    +S DG+RIA    D T+ VF     + L  ++ H   V    +S  D   + + S
Sbjct: 625 VYHACFSQDGQRIASCGADKTLQVFKAETGEKLLDIKAHEDEVLCCAFSS-DDSYIATCS 683
Query: 221 DDTHVHMYDAEGKSLVTAMSGHASWV--LSVDASPDGAAITTGSSDRTVKLWDLNMRAAM 278
            D  V ++D+    LV     H+  V         +   + TGS+D  +KLWDLN +   
Sbjct: 684 ADKKVKIWDSATGKLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKECR 743
Query: 279 QSMTNHTDQVWGVSFRPLGGRVVSVSDDKSISLYE 313
            +M  HT+ V    F P    + S S D ++ L++
Sbjct: 744 NTMFGHTNSVNHCRFSPDDELLASCSADGTLRLWD 778

>pdb|4GGA|A Chain A, Structural Analysis Of Human Cdc20 Supports Multi-Site Degron Recognition By ApcC Length = 420

Iteration: 1
 Score = 60.8 bits (146), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 69/264 (26%), Positives = 112/264 (42%), Gaps = 28/264 (10%)
Query: 15  ESVWAVTWVPATETRPALLLTGSLDETVKLWRPDDMQLERTNTGHCLGVVSVAAHPSGII 74
           E + +V W+         L  G+    V+LW     +  R  T H   V S++   +  I
Sbjct: 148 EYISSVAWIKEGN----YLAVGTSSAEVQLWDVQQQKRLRNMTSHSARVGSLSW--NSYI 201
Query: 75  AASASLDSFVRVFDVDT-NASIATLEASPSEVWQMQFDPKGTTLAVAGGGSASVKLWDTA 133
            +S S    +   DV      +ATL     EV  +++ P G  LA +GG    V +W +A
Sbjct: 202 LSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLA-SGGNDNLVNVWPSA 260
Query: 134 TWNLIATLSIPRPEGLKPTDK-SSSKKFVLSVAWSPDGRRIAC---GSMDGTISVFDVTR 189
                     P   G  P    +  +  V +VAW P    +     G+ D  I +++V  
Sbjct: 261 ----------PGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCS 310
Query: 190 AKFLHHLEGHFMPVRSLVYSPVDPRVLFS---ASDDTHVHMYDAEGKSLVTAMSGHASWV 246
              L  ++ H   V S+++SP    ++     A +   +  Y    K  V  + GH S V
Sbjct: 311 GACLSAVDAHSQ-VCSILWSPHYKELISGHGFAQNQLVIWKYPTMAK--VAELKGHTSRV 367
Query: 247 LSVDASPDGAAITTGSSDRTVKLW 270
           LS+  SPDGA + + ++D T++LW
Sbjct: 368 LSLTMSPDGATVASAAADETLRLW 391

>pdb|4GGA|A Chain A, Structural Analysis Of Human Cdc20 Supports Multi-Site Degron Recognition By ApcC Length = 420

Iteration: 1
 Score = 51.2 bits (121), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 37/167 (22%), Positives = 76/167 (45%), Gaps = 9/167 (5%)
Query: 155 SSSKKFVLSVAWSPDGRRIACGSMDGTISVFDVTRAKF----LHHLEGHFMPVRSLVYSP 210
           S   + V  + W+PDGR +A G  D  ++V+     +     L     H   V+++ + P
Sbjct: 227 SGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCP 286
Query: 211 VDPRVLFSA--SDDTHVHMYDAEGKSLVTAMSGHASWVLSVDASPDGAAITTGS--SDRT 266
               VL +   + D H+ +++    + ++A+  H+  V S+  SP    + +G   +   
Sbjct: 287 WQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAHSQ-VCSILWSPHYKELISGHGFAQNQ 345
Query: 267 VKLWDLNMRAAMQSMTNHTDQVWGVSFRPLGGRVVSVSDDKSISLYE 313
           + +W     A +  +  HT +V  ++  P G  V S + D+++ L+ 
Sbjct: 346 LVIWKYPTMAKVAELKGHTSRVLSLTMSPDGATVASAAADETLRLWR 392

>pdb|4GGD|A Chain A, Structural Analysis Of Human Cdc20 Supports Multisite Degron Recognition By ApcC. Length = 431

Iteration: 1
 Score = 60.5 bits (145), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 69/264 (26%), Positives = 112/264 (42%), Gaps = 28/264 (10%)
Query: 15  ESVWAVTWVPATETRPALLLTGSLDETVKLWRPDDMQLERTNTGHCLGVVSVAAHPSGII 74
           E + +V W+         L  G+    V+LW     +  R  T H   V S++   +  I
Sbjct: 159 EYISSVAWIKEGN----YLAVGTSSAEVQLWDVQQQKRLRNMTSHSARVGSLSW--NSYI 212
Query: 75  AASASLDSFVRVFDVDT-NASIATLEASPSEVWQMQFDPKGTTLAVAGGGSASVKLWDTA 133
            +S S    +   DV      +ATL     EV  +++ P G  LA +GG    V +W +A
Sbjct: 213 LSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLA-SGGNDNLVNVWPSA 271
Query: 134 TWNLIATLSIPRPEGLKPTDK-SSSKKFVLSVAWSPDGRRI---ACGSMDGTISVFDVTR 189
                     P   G  P    +  +  V +VAW P    +     G+ D  I +++V  
Sbjct: 272 ----------PGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCS 321
Query: 190 AKFLHHLEGHFMPVRSLVYSPVDPRVLFS---ASDDTHVHMYDAEGKSLVTAMSGHASWV 246
              L  ++ H   V S+++SP    ++     A +   +  Y    K  V  + GH S V
Sbjct: 322 GACLSAVDAHSQ-VCSILWSPHYKELISGHGFAQNQLVIWKYPTMAK--VAELKGHTSRV 378
Query: 247 LSVDASPDGAAITTGSSDRTVKLW 270
           LS+  SPDGA + + ++D T++LW
Sbjct: 379 LSLTMSPDGATVASAAADETLRLW 402

>pdb|4GGD|A Chain A, Structural Analysis Of Human Cdc20 Supports Multisite Degron Recognition By ApcC. Length = 431

Iteration: 1
 Score = 51.2 bits (121), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 37/167 (22%), Positives = 76/167 (45%), Gaps = 9/167 (5%)
Query: 155 SSSKKFVLSVAWSPDGRRIACGSMDGTISVFDVTRAKF----LHHLEGHFMPVRSLVYSP 210
           S   + V  + W+PDGR +A G  D  ++V+     +     L     H   V+++ + P
Sbjct: 238 SGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCP 297
Query: 211 VDPRVLFSA--SDDTHVHMYDAEGKSLVTAMSGHASWVLSVDASPDGAAITTGS--SDRT 266
               VL +   + D H+ +++    + ++A+  H+  V S+  SP    + +G   +   
Sbjct: 298 WQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAHSQ-VCSILWSPHYKELISGHGFAQNQ 356
Query: 267 VKLWDLNMRAAMQSMTNHTDQVWGVSFRPLGGRVVSVSDDKSISLYE 313
           + +W     A +  +  HT +V  ++  P G  V S + D+++ L+ 
Sbjct: 357 LVIWKYPTMAKVAELKGHTSRVLSLTMSPDGATVASAAADETLRLWR 403

>pdb|4AEZ|A Chain A, Crystal Structure Of Mitotic Checkpoint Complex Length = 401

Iteration: 1
 Score = 60.1 bits (144), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 43/148 (29%), Positives = 69/148 (46%), Gaps = 7/148 (4%)
Query: 149 LKPTDKSSSKKFVLSVAWSPDGRRIACGSMDGTISVFDVTRAKFLHHLEGHFMPVRSLVY 208
           L  TD+S+   +V SV WS DG  ++ G  +G + ++DV     L  + GH   V  L +
Sbjct: 128 LAETDEST---YVASVKWSHDGSFLSVGLGNGLVDIYDVESQTKLRTMAGHQARVGCLSW 184
Query: 209 SPVDPRVLFSASDDTHVHMYDAE-GKSLVTAMSGHASWVLSVDASPDGAAITTGSSDRTV 267
              +  VL S S    +H +D       +  + GH+S V  +    DG  + +G +D  V
Sbjct: 185 ---NRHVLSSGSRSGAIHHHDVRIANHQIGTLQGHSSEVCGLAWRSDGLQLASGGNDNVV 241
Query: 268 KLWDLNMRAAMQSMTNHTDQVWGVSFRP 295
           ++WD        + TNH   V  V++ P
Sbjct: 242 QIWDARSSIPKFTKTNHNAAVKAVAWCP 269

>pdb|3JPX|A Chain A, Eed: A Novel Histone Trimethyllysine Binder Within The Eed-Ezh2 Polycomb Complex Length = 402

Iteration: 1
 Score = 59.7 bits (143), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 50/208 (24%), Positives = 85/208 (40%), Gaps = 18/208 (8%)
Query: 108 MQFD---PKGTTLAVAGGGSASVKLWDTATWNLIATLSIPRPEGLKPTDKSSSKKFVLSV 164
           +QF+    +G  L  A  GS  V L++  +   I  L           D  + + F  + 
Sbjct: 60  VQFNWHSKEGDPLVFATVGSNRVTLYECHSQGEIRLLQ-------SYVDADADENF-YTC 111
Query: 165 AWSPDGRR----IACGSMDGTISVFDVTRAKFLHHLEGHFMPVRSLVYSPVDPRVLFSAS 220
           AW+ D       +A     G I + +    + + H  GH   +  L + P DP +L S S
Sbjct: 112 AWTYDSNTSHPLLAVAGSRGIIRIINPITMQCIKHYVGHGNAINELKFHPRDPNLLLSVS 171
Query: 221 DDTHVHMYDAEGKSLVT---AMSGHASWVLSVDASPDGAAITTGSSDRTVKLWDLNMRAA 277
            D  + +++ +  +LV     + GH   VLS D    G  I +   D ++KLW +N +  
Sbjct: 172 KDHALRLWNIQTDTLVAIFGGVEGHRDEVLSADYDLLGEKIMSCGMDHSLKLWRINSKRM 231
Query: 278 MQSMTNHTDQVWGVSFRPLGGRVVSVSD 305
           M ++    D     + RP   + +   D
Sbjct: 232 MNAIKESYDYNPNKTNRPFISQKIHFPD 259

>pdb|2QXV|A Chain A, Structural Basis Of Ezh2 Recognition By Eed Length = 361

Iteration: 1
 Score = 59.7 bits (143), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 50/208 (24%), Positives = 85/208 (40%), Gaps = 18/208 (8%)
Query: 108 MQFD---PKGTTLAVAGGGSASVKLWDTATWNLIATLSIPRPEGLKPTDKSSSKKFVLSV 164
           +QF+    +G  L  A  GS  V L++  +   I  L           D  + + F  + 
Sbjct: 19  VQFNWHSKEGDPLVFATVGSNRVTLYECHSQGEIRLLQ-------SYVDADADENF-YTC 70
Query: 165 AWSPDGRR----IACGSMDGTISVFDVTRAKFLHHLEGHFMPVRSLVYSPVDPRVLFSAS 220
           AW+ D       +A     G I + +    + + H  GH   +  L + P DP +L S S
Sbjct: 71  AWTYDSNTSHPLLAVAGSRGIIRIINPITMQCIKHYVGHGNAINELKFHPRDPNLLLSVS 130
Query: 221 DDTHVHMYDAEGKSLVT---AMSGHASWVLSVDASPDGAAITTGSSDRTVKLWDLNMRAA 277
            D  + +++ +  +LV     + GH   VLS D    G  I +   D ++KLW +N +  
Sbjct: 131 KDHALRLWNIQTDTLVAIFGGVEGHRDEVLSADYDLLGEKIMSCGMDHSLKLWRINSKRM 190
Query: 278 MQSMTNHTDQVWGVSFRPLGGRVVSVSD 305
           M ++    D     + RP   + +   D
Sbjct: 191 MNAIKESYDYNPNKTNRPFISQKIHFPD 218

>pdb|3IIY|A Chain A, Crystal Structure Of Eed In Complex With A Trimethylated Histone H1k26 Peptide Length = 365

Iteration: 1
 Score = 59.7 bits (143), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 50/208 (24%), Positives = 85/208 (40%), Gaps = 18/208 (8%)
Query: 108 MQFD---PKGTTLAVAGGGSASVKLWDTATWNLIATLSIPRPEGLKPTDKSSSKKFVLSV 164
           +QF+    +G  L  A  GS  V L++  +   I  L           D  + + F  + 
Sbjct: 23  VQFNWHSKEGDPLVFATVGSNRVTLYECHSQGEIRLLQ-------SYVDADADENF-YTC 74
Query: 165 AWSPDGRR----IACGSMDGTISVFDVTRAKFLHHLEGHFMPVRSLVYSPVDPRVLFSAS 220
           AW+ D       +A     G I + +    + + H  GH   +  L + P DP +L S S
Sbjct: 75  AWTYDSNTSHPLLAVAGSRGIIRIINPITMQCIKHYVGHGNAINELKFHPRDPNLLLSVS 134
Query: 221 DDTHVHMYDAEGKSLVT---AMSGHASWVLSVDASPDGAAITTGSSDRTVKLWDLNMRAA 277
            D  + +++ +  +LV     + GH   VLS D    G  I +   D ++KLW +N +  
Sbjct: 135 KDHALRLWNIQTDTLVAIFGGVEGHRDEVLSADYDLLGEKIMSCGMDHSLKLWRINSKRM 194
Query: 278 MQSMTNHTDQVWGVSFRPLGGRVVSVSD 305
           M ++    D     + RP   + +   D
Sbjct: 195 MNAIKESYDYNPNKTNRPFISQKIHFPD 222

>pdb|3IIW|A Chain A, Crystal Structure Of Eed In Complex With A Trimethylated Histone H3k27 Peptide Length = 365

Iteration: 1
 Score = 59.7 bits (143), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 50/208 (24%), Positives = 85/208 (40%), Gaps = 18/208 (8%)
Query: 108 MQFD---PKGTTLAVAGGGSASVKLWDTATWNLIATLSIPRPEGLKPTDKSSSKKFVLSV 164
           +QF+    +G  L  A  GS  V L++  +   I  L           D  + + F  + 
Sbjct: 23  VQFNWHSKEGDPLVFATVGSNRVTLYECHSQGEIRLLQ-------SYVDADADENF-YTC 74
Query: 165 AWSPDGRR----IACGSMDGTISVFDVTRAKFLHHLEGHFMPVRSLVYSPVDPRVLFSAS 220
           AW+ D       +A     G I + +    + + H  GH   +  L + P DP +L S S
Sbjct: 75  AWTYDSNTSHPLLAVAGSRGIIRIINPITMQCIKHYVGHGNAINELKFHPRDPNLLLSVS 134
Query: 221 DDTHVHMYDAEGKSLVT---AMSGHASWVLSVDASPDGAAITTGSSDRTVKLWDLNMRAA 277
            D  + +++ +  +LV     + GH   VLS D    G  I +   D ++KLW +N +  
Sbjct: 135 KDHALRLWNIQTDTLVAIFGGVEGHRDEVLSADYDLLGEKIMSCGMDHSLKLWRINSKRM 194
Query: 278 MQSMTNHTDQVWGVSFRPLGGRVVSVSD 305
           M ++    D     + RP   + +   D
Sbjct: 195 MNAIKESYDYNPNKTNRPFISQKIHFPD 222

>pdb|3JZN|A Chain A, Structure Of Eed In Apo Form Length = 366

Iteration: 1
 Score = 59.3 bits (142), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 50/208 (24%), Positives = 85/208 (40%), Gaps = 18/208 (8%)
Query: 108 MQFD---PKGTTLAVAGGGSASVKLWDTATWNLIATLSIPRPEGLKPTDKSSSKKFVLSV 164
           +QF+    +G  L  A  GS  V L++  +   I  L           D  + + F  + 
Sbjct: 24  VQFNWHSKEGDPLVFATVGSNRVTLYECHSQGEIRLLQ-------SYVDADADENF-YTC 75
Query: 165 AWSPDGRR----IACGSMDGTISVFDVTRAKFLHHLEGHFMPVRSLVYSPVDPRVLFSAS 220
           AW+ D       +A     G I + +    + + H  GH   +  L + P DP +L S S
Sbjct: 76  AWTYDSNTSHPLLAVAGSRGIIRIINPITMQCIKHYVGHGNAINELKFHPRDPNLLLSVS 135
Query: 221 DDTHVHMYDAEGKSLVT---AMSGHASWVLSVDASPDGAAITTGSSDRTVKLWDLNMRAA 277
            D  + +++ +  +LV     + GH   VLS D    G  I +   D ++KLW +N +  
Sbjct: 136 KDHALRLWNIQTDTLVAIFGGVEGHRDEVLSADYDLLGEKIMSCGMDHSLKLWRINSKRM 195
Query: 278 MQSMTNHTDQVWGVSFRPLGGRVVSVSD 305
           M ++    D     + RP   + +   D
Sbjct: 196 MNAIKESYDYNPNKTNRPFISQKIHFPD 223

>pdb|1NEX|B Chain B, Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Complex Length = 464

Iteration: 1
 Score = 59.3 bits (142), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 67/282 (23%), Positives = 116/282 (41%), Gaps = 20/282 (7%)
Query: 2   KFAGLKSVENAHEESVWAVTWVPATETRPALLLTGSLDETVKLWRPDDMQLERTNTGHCL 61
           KF   ++    H  SV     +   +     ++TG+ D+ ++++   + +     +GH  
Sbjct: 109 KFVPQRTTLRGHXTSV-----ITCLQFEDNYVITGADDKXIRVYDSINKKFLLQLSGHDG 163
Query: 62  GVVSVAAHPSGIIAASASLDSFVRVFDVDTNASIATLEASPSEVWQMQF-DPKGTTLAVA 120
           GV ++     GI+  S S D  VRV+D+         E   S V  +   + K     V 
Sbjct: 164 GVWALKYAHGGILV-SGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVT 222
Query: 121 GGGSASVKLWDTATWNLIAT--------LSIPRPEGLKPTDKSSSKKFVLSV-AWSPDGR 171
           G    ++ +W     + +          L    PE   P      +    SV   S  G 
Sbjct: 223 GSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEE-NPYFVGVLRGHXASVRTVSGHGN 281
Query: 172 RIACGSMDGTISVFDVTRAKFLHHLEGHFMPVRSLVYSPVDPRVLFSASDDTHVHMYDAE 231
            +  GS D T+ V+DV + K L+ L GH   + S +Y     R + SAS DT + ++D E
Sbjct: 282 IVVSGSYDNTLIVWDVAQXKCLYILSGHTDRIYSTIYDHERKRCI-SASXDTTIRIWDLE 340
Query: 232 GKSLVTAMSGHASWVLSVDASPDGAAITTGSSDRTVKLWDLN 273
              L   + GH + V  +  S     + + ++D +++ WD N
Sbjct: 341 NGELXYTLQGHTALVGLLRLSD--KFLVSAAADGSIRGWDAN 380

>pdb|1NEX|B Chain B, Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Complex Length = 464

Iteration: 1
 Score = 55.1 bits (131), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 45/192 (23%), Positives = 83/192 (43%), Gaps = 35/192 (18%)
Query: 155 SSSKKFVLSVA------WS---PDGRRIACGSMDGTISVFDVTRAKFLHHLEGHFMPVRS 205
           S +KKF+L ++      W+     G  +  GS D T+ V+D+ +    H  EGH   VR 
Sbjct: 149 SINKKFLLQLSGHDGGVWALKYAHGGILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRC 208
Query: 206 L-VYSPVDPRVLFSASDDTHVHMYD-----------------------AEGKSLVTAMSG 241
           L +    + + + + S D  +H++                         E    V  + G
Sbjct: 209 LDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRG 268
Query: 242 HASWVLSVDASPDGAAITTGSSDRTVKLWDLNMRAAMQSMTNHTDQVWGVSFRPLGGRVV 301
           H + V +V  S  G  + +GS D T+ +WD+     +  ++ HTD+++   +     R +
Sbjct: 269 HXASVRTV--SGHGNIVVSGSYDNTLIVWDVAQXKCLYILSGHTDRIYSTIYDHERKRCI 326
Query: 302 SVSDDKSISLYE 313
           S S D +I +++
Sbjct: 327 SASXDTTIRIWD 338

>pdb|3MKS|B Chain B, Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH AN ALLOSTERIC Inhibitor Scf-I2 Length = 464

Iteration: 1
 Score = 59.3 bits (142), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 67/282 (23%), Positives = 118/282 (41%), Gaps = 20/282 (7%)
Query: 2   KFAGLKSVENAHEESVWAVTWVPATETRPALLLTGSLDETVKLWRPDDMQLERTNTGHCL 61
           KF   ++    H  SV     +   +     ++TG+ D+ ++++   + +     +GH  
Sbjct: 109 KFVPQRTTLRGHMTSV-----ITCLQFEDNYVITGADDKMIRVYDSINKKFLLQLSGHDG 163
Query: 62  GVVSVAAHPSGIIAASASLDSFVRVFDVDTNASIATLEASPSEVWQMQF-DPKGTTLAVA 120
           GV ++     GI+  S S D  VRV+D+         E   S V  +   + K     V 
Sbjct: 164 GVWALKYAHGGILV-SGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVT 222
Query: 121 GGGSASVKLWDTATWNLIAT--------LSIPRPEGLKPTDKSSSKKFVLSV-AWSPDGR 171
           G    ++ +W     + +          L    PE   P      +  + SV   S  G 
Sbjct: 223 GSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEE-NPYFVGVLRGHMASVRTVSGHGN 281
Query: 172 RIACGSMDGTISVFDVTRAKFLHHLEGHFMPVRSLVYSPVDPRVLFSASDDTHVHMYDAE 231
            +  GS D T+ V+DV + K L+ L GH   + S +Y     R + SAS DT + ++D E
Sbjct: 282 IVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCI-SASMDTTIRIWDLE 340
Query: 232 GKSLVTAMSGHASWVLSVDASPDGAAITTGSSDRTVKLWDLN 273
              L+  + GH + V  +  S     + + ++D +++ WD N
Sbjct: 341 NGELMYTLQGHTALVGLLRLSD--KFLVSAAADGSIRGWDAN 380

>pdb|3MKS|B Chain B, Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH AN ALLOSTERIC Inhibitor Scf-I2 Length = 464

Iteration: 1
 Score = 53.9 bits (128), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 45/192 (23%), Positives = 83/192 (43%), Gaps = 35/192 (18%)
Query: 155 SSSKKFVLSVA------WS---PDGRRIACGSMDGTISVFDVTRAKFLHHLEGHFMPVRS 205
           S +KKF+L ++      W+     G  +  GS D T+ V+D+ +    H  EGH   VR 
Sbjct: 149 SINKKFLLQLSGHDGGVWALKYAHGGILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRC 208
Query: 206 L-VYSPVDPRVLFSASDDTHVHMYD-----------------------AEGKSLVTAMSG 241
           L +    + + + + S D  +H++                         E    V  + G
Sbjct: 209 LDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRG 268
Query: 242 HASWVLSVDASPDGAAITTGSSDRTVKLWDLNMRAAMQSMTNHTDQVWGVSFRPLGGRVV 301
           H + V +V  S  G  + +GS D T+ +WD+     +  ++ HTD+++   +     R +
Sbjct: 269 HMASVRTV--SGHGNIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCI 326
Query: 302 SVSDDKSISLYE 313
           S S D +I +++
Sbjct: 327 SASMDTTIRIWD 338

>pdb|1NR0|A Chain A, Two Seven-Bladed Beta-Propeller Domains Revealed By The Structure Of A C. Elegans Homologue Of Yeast Actin Interacting Protein 1 (Aip1). Length = 611

Iteration: 1
 Score = 57.0 bits (136), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 53/213 (24%), Positives = 92/213 (43%), Gaps = 25/213 (11%)
Query: 112 PKGTTLAVAGGGSASVKLWDTATWNLIATLSIPRPEGLKPTDKSSSKKFVLSVAWSPDGR 171
           P G   A +G    +V++WDT     I   +IP   G            V  ++W  + +
Sbjct: 69  PSGYYCA-SGDVHGNVRIWDTTQTTHILKTTIPVFSGP-----------VKDISWDSESK 116
Query: 172 RIACGSMD----GTISVFDVTRAKFLHHLEGHFMPVRSLVYSPVDPRVLFSASDDTHVHM 227
           RIA         G + +FD   +    +L G    + S+ + P  P  + S SDD  V +
Sbjct: 117 RIAAVGEGRERFGHVFLFDTGTSN--GNLTGQARAMNSVDFKPSRPFRIISGSDDNTVAI 174
Query: 228 YDAEGKSLVTAMSGHASWVLSVDASPDGAAITTGSSDRTVKLW---DLNMRAAMQ--SMT 282
           ++       +    H  +V SV  +PDG+   +   D T+ L+   D       +  S+ 
Sbjct: 175 FEGPPFKFKSTFGEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLK 234
Query: 283 N--HTDQVWGVSFRPLGGRVVSVSDDKSISLYE 313
           N  H+  V+G+++ P G ++ S S DK+I ++ 
Sbjct: 235 NVAHSGSVFGLTWSPDGTKIASASADKTIKIWN 267

>pdb|2HES|X Chain X, Cytosolic Iron-sulphur Assembly Protein- 1 Length = 330

Iteration: 1
 Score = 56.6 bits (135), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 51/177 (28%), Positives = 84/177 (47%), Gaps = 16/177 (9%)
Query: 153 DKSSSKKFVLSVAWSPDGRRIACGSMDGTISVF------DVT-RAKFLHHLEGHFMPVRS 205
           D+++ KK + SVAW P    +A GS D T+S++      D T     L  +EGH   V+ 
Sbjct: 53  DETAHKKAIRSVAWRPHTSLLAAGSFDSTVSIWAKEESADRTFEMDLLAIIEGHENEVKG 112
Query: 206 LVYSPVDPRVLFSASDDTHVHMYD----AEGKSLVTAMSGHASWVLSVDASPDGAAITTG 261
           + +S  D   L + S D  V +++     E    ++ +  H+  V  V   P  A + + 
Sbjct: 113 VAWSN-DGYYLATCSRDKSVWIWETDESGEEYECISVLQEHSQDVKHVIWHPSEALLASS 171
Query: 262 SSDRTVKLW-DLNMRAAMQSMTN-HTDQVWGVSFRPLGG--RVVSVSDDKSISLYEY 314
           S D TV++W D +      ++ N H   VW   F    G  R+ S SDD ++ +++Y
Sbjct: 172 SYDDTVRIWKDYDDDWECVAVLNGHEGTVWSSDFDKTEGVFRLCSGSDDSTVRVWKY 228

>pdb|3RFH|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group P21 Length = 319

Iteration: 1
 Score = 53.5 bits (127), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 63/251 (25%), Positives = 106/251 (42%), Gaps = 20/251 (7%)
Query: 20  VTWVPATETRPALLLTGSLDETVKLWR--PDDMQLE---RTNTGHCLGVVSVAAHPSGII 74
           VT +  +  +P LLL+ S D+T+  W+   DD +     R+  GH   V        G  
Sbjct: 20  VTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTADGAY 79
Query: 75  AASASLDSFVRVFDVDTNASIATLEASPSEVWQMQFDPKGTTLAVAGGGSASVKLWDTAT 134
           A SAS D  +R++DV T  +        S+V  +  D K + + ++G    ++K+W T  
Sbjct: 80  ALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMI-ISGSRDKTIKVW-TIK 137
Query: 135 WNLIATLSIPRPEGLKPTDKSSSKKFVLSVAWSPDGRRIACGSMDGTISVFDVTRAKFLH 194
              +ATL       L   D  S  + V +     D   I     D  +  +++ + +   
Sbjct: 138 GQCLATL-------LGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEA 190
Query: 195 HLEGHFMPVRSLVYSPVDPRVLFSASDDTHVHMYDAEGKSLVTAMSGHASWVLSVDASPD 254
              GH   + +L  SP D  ++ SA  D  + +++   K  +  +S     V S+  SP+
Sbjct: 191 DFIGHNSNINTLTASP-DGTLIASAGKDGEIMLWNLAAKKAMYTLSAQDE-VFSLAFSPN 248
Query: 255 ----GAAITTG 261
                AA  TG
Sbjct: 249 RYWLAAATATG 259

>pdb|3RFH|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group P21 Length = 319

Iteration: 1
 Score = 50.8 bits (120), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 39/155 (25%), Positives = 64/155 (41%), Gaps = 12/155 (7%)
Query: 167 SPDGRRIACGSMDGTISVFDVTRAKFLHHLEGHFMPVRSLVYSPVDPR--VLFSASDDTH 224
           + DG      S D T+ ++DV   +      GH   V S+    +D +  ++ S S D  
Sbjct: 74  TADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSV---DIDKKASMIISGSRDKT 130
Query: 225 VHMYDAEGKSLVTAMSGHASWVLSVDASP------DGAAITTGSSDRTVKLWDLNMRAAM 278
           + ++  +G+ L T + GH  WV  V   P      D   I +  +D+ VK W+LN     
Sbjct: 131 IKVWTIKGQCLATLL-GHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIE 189
Query: 279 QSMTNHTDQVWGVSFRPLGGRVVSVSDDKSISLYE 313
                H   +  ++  P G  + S   D  I L+ 
Sbjct: 190 ADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWN 224

>pdb|3JYV|R Chain R, Structure Of The 40s Rrna And Proteins And PE TRNA FOR EUKARYOTIC Ribosome Based On Cryo-Em Map Of Thermomyces Lanuginosus Ribosome At 8.9a Resolution Length = 313

Iteration: 1
 Score = 53.5 bits (127), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 63/251 (25%), Positives = 106/251 (42%), Gaps = 20/251 (7%)
Query: 20  VTWVPATETRPALLLTGSLDETVKLWR--PDDMQLE---RTNTGHCLGVVSVAAHPSGII 74
           VT +  +  +P LLL+ S D+T+  W+   DD +     R+  GH   V        G  
Sbjct: 14  VTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTADGAY 73
Query: 75  AASASLDSFVRVFDVDTNASIATLEASPSEVWQMQFDPKGTTLAVAGGGSASVKLWDTAT 134
           A SAS D  +R++DV T  +        S+V  +  D K + + ++G    ++K+W T  
Sbjct: 74  ALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMI-ISGSRDKTIKVW-TIK 131
Query: 135 WNLIATLSIPRPEGLKPTDKSSSKKFVLSVAWSPDGRRIACGSMDGTISVFDVTRAKFLH 194
              +ATL       L   D  S  + V +     D   I     D  +  +++ + +   
Sbjct: 132 GQCLATL-------LGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEA 184
Query: 195 HLEGHFMPVRSLVYSPVDPRVLFSASDDTHVHMYDAEGKSLVTAMSGHASWVLSVDASPD 254
              GH   + +L  SP D  ++ SA  D  + +++   K  +  +S     V S+  SP+
Sbjct: 185 DFIGHNSNINTLTASP-DGTLIASAGKDGEIMLWNLAAKKAMYTLSAQDE-VFSLAFSPN 242
Query: 255 ----GAAITTG 261
                AA  TG
Sbjct: 243 RYWLAAATATG 253

>pdb|3JYV|R Chain R, Structure Of The 40s Rrna And Proteins And PE TRNA FOR EUKARYOTIC Ribosome Based On Cryo-Em Map Of Thermomyces Lanuginosus Ribosome At 8.9a Resolution Length = 313

Iteration: 1
 Score = 50.8 bits (120), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 39/155 (25%), Positives = 64/155 (41%), Gaps = 12/155 (7%)
Query: 167 SPDGRRIACGSMDGTISVFDVTRAKFLHHLEGHFMPVRSLVYSPVDPR--VLFSASDDTH 224
           + DG      S D T+ ++DV   +      GH   V S+    +D +  ++ S S D  
Sbjct: 68  TADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSV---DIDKKASMIISGSRDKT 124
Query: 225 VHMYDAEGKSLVTAMSGHASWVLSVDASP------DGAAITTGSSDRTVKLWDLNMRAAM 278
           + ++  +G+ L T + GH  WV  V   P      D   I +  +D+ VK W+LN     
Sbjct: 125 IKVWTIKGQCLATLL-GHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIE 183
Query: 279 QSMTNHTDQVWGVSFRPLGGRVVSVSDDKSISLYE 313
                H   +  ++  P G  + S   D  I L+ 
Sbjct: 184 ADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWN 218

>pdb|3RFG|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group P63 Length = 319

Iteration: 1
 Score = 53.5 bits (127), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 63/251 (25%), Positives = 106/251 (42%), Gaps = 20/251 (7%)
Query: 20  VTWVPATETRPALLLTGSLDETVKLWR--PDDMQLE---RTNTGHCLGVVSVAAHPSGII 74
           VT +  +  +P LLL+ S D+T+  W+   DD +     R+  GH   V        G  
Sbjct: 20  VTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTADGAY 79
Query: 75  AASASLDSFVRVFDVDTNASIATLEASPSEVWQMQFDPKGTTLAVAGGGSASVKLWDTAT 134
           A SAS D  +R++DV T  +        S+V  +  D K + + ++G    ++K+W T  
Sbjct: 80  ALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMI-ISGSRDKTIKVW-TIK 137
Query: 135 WNLIATLSIPRPEGLKPTDKSSSKKFVLSVAWSPDGRRIACGSMDGTISVFDVTRAKFLH 194
              +ATL       L   D  S  + V +     D   I     D  +  +++ + +   
Sbjct: 138 GQCLATL-------LGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEA 190
Query: 195 HLEGHFMPVRSLVYSPVDPRVLFSASDDTHVHMYDAEGKSLVTAMSGHASWVLSVDASPD 254
              GH   + +L  SP D  ++ SA  D  + +++   K  +  +S     V S+  SP+
Sbjct: 191 DFIGHNSNINTLTASP-DGTLIASAGKDGEIMLWNLAAKKAMYTLSAQDE-VFSLAFSPN 248
Query: 255 ----GAAITTG 261
                AA  TG
Sbjct: 249 RYWLAAATATG 259

>pdb|3RFG|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group P63 Length = 319

Iteration: 1
 Score = 50.8 bits (120), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 39/155 (25%), Positives = 64/155 (41%), Gaps = 12/155 (7%)
Query: 167 SPDGRRIACGSMDGTISVFDVTRAKFLHHLEGHFMPVRSLVYSPVDPR--VLFSASDDTH 224
           + DG      S D T+ ++DV   +      GH   V S+    +D +  ++ S S D  
Sbjct: 74  TADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSV---DIDKKASMIISGSRDKT 130
Query: 225 VHMYDAEGKSLVTAMSGHASWVLSVDASP------DGAAITTGSSDRTVKLWDLNMRAAM 278
           + ++  +G+ L T + GH  WV  V   P      D   I +  +D+ VK W+LN     
Sbjct: 131 IKVWTIKGQCLATLL-GHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIE 189
Query: 279 QSMTNHTDQVWGVSFRPLGGRVVSVSDDKSISLYE 313
                H   +  ++  P G  + S   D  I L+ 
Sbjct: 190 ADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWN 224

>pdb|3IZB|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into A 6.1 A Cryo-Em Map Of Saccharomyces Cerevisiae Translating 80s Ribosome Length = 319

Iteration: 1
 Score = 53.5 bits (127), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 63/251 (25%), Positives = 106/251 (42%), Gaps = 20/251 (7%)
Query: 20  VTWVPATETRPALLLTGSLDETVKLWR--PDDMQLE---RTNTGHCLGVVSVAAHPSGII 74
           VT +  +  +P LLL+ S D+T+  W+   DD +     R+  GH   V        G  
Sbjct: 20  VTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTADGAY 79
Query: 75  AASASLDSFVRVFDVDTNASIATLEASPSEVWQMQFDPKGTTLAVAGGGSASVKLWDTAT 134
           A SAS D  +R++DV T  +        S+V  +  D K + + ++G    ++K+W T  
Sbjct: 80  ALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMI-ISGSRDKTIKVW-TIK 137
Query: 135 WNLIATLSIPRPEGLKPTDKSSSKKFVLSVAWSPDGRRIACGSMDGTISVFDVTRAKFLH 194
              +ATL       L   D  S  + V +     D   I     D  +  +++ + +   
Sbjct: 138 GQCLATL-------LGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEA 190
Query: 195 HLEGHFMPVRSLVYSPVDPRVLFSASDDTHVHMYDAEGKSLVTAMSGHASWVLSVDASPD 254
              GH   + +L  SP D  ++ SA  D  + +++   K  +  +S     V S+  SP+
Sbjct: 191 DFIGHNSNINTLTASP-DGTLIASAGKDGEIMLWNLAAKKAMYTLSAQDE-VFSLAFSPN 248
Query: 255 ----GAAITTG 261
                AA  TG
Sbjct: 249 RYWLAAATATG 259

>pdb|3IZB|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into A 6.1 A Cryo-Em Map Of Saccharomyces Cerevisiae Translating 80s Ribosome Length = 319

Iteration: 1
 Score = 50.4 bits (119), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 39/155 (25%), Positives = 64/155 (41%), Gaps = 12/155 (7%)
Query: 167 SPDGRRIACGSMDGTISVFDVTRAKFLHHLEGHFMPVRSLVYSPVDPR--VLFSASDDTH 224
           + DG      S D T+ ++DV   +      GH   V S+    +D +  ++ S S D  
Sbjct: 74  TADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSV---DIDKKASMIISGSRDKT 130
Query: 225 VHMYDAEGKSLVTAMSGHASWVLSVDASP------DGAAITTGSSDRTVKLWDLNMRAAM 278
           + ++  +G+ L T + GH  WV  V   P      D   I +  +D+ VK W+LN     
Sbjct: 131 IKVWTIKGQCLATLL-GHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIE 189
Query: 279 QSMTNHTDQVWGVSFRPLGGRVVSVSDDKSISLYE 313
                H   +  ++  P G  + S   D  I L+ 
Sbjct: 190 ADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWN 224

>pdb|3FRX|A Chain A, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1. Length = 319

Iteration: 1
 Score = 53.1 bits (126), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 63/251 (25%), Positives = 105/251 (41%), Gaps = 20/251 (7%)
Query: 20  VTWVPATETRPALLLTGSLDETVKLWR--PDDMQLE---RTNTGHCLGVVSVAAHPSGII 74
           VT +  +  +P LLL+ S D+T+  W+   DD +     R+  GH   V        G  
Sbjct: 20  VTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTADGAY 79
Query: 75  AASASLDSFVRVFDVDTNASIATLEASPSEVWQMQFDPKGTTLAVAGGGSASVKLWDTAT 134
           A SAS D  +R++DV T  +        S+V  +  D K + + ++G    ++K+W T  
Sbjct: 80  ALSASWDKTLRLWDVATGETYQRFVGHKSDVXSVDIDKKASXI-ISGSRDKTIKVW-TIK 137
Query: 135 WNLIATLSIPRPEGLKPTDKSSSKKFVLSVAWSPDGRRIACGSMDGTISVFDVTRAKFLH 194
              +ATL       L   D  S  + V +     D   I     D  +  +++ + +   
Sbjct: 138 GQCLATL-------LGHNDWVSQVRVVPNEKADDDSVTIISAGNDKXVKAWNLNQFQIEA 190
Query: 195 HLEGHFMPVRSLVYSPVDPRVLFSASDDTHVHMYDAEGKSLVTAMSGHASWVLSVDASPD 254
              GH   + +L  SP D  ++ SA  D  + +++   K     +S     V S+  SP+
Sbjct: 191 DFIGHNSNINTLTASP-DGTLIASAGKDGEIXLWNLAAKKAXYTLSAQDE-VFSLAFSPN 248
Query: 255 ----GAAITTG 261
                AA  TG
Sbjct: 249 RYWLAAATATG 259

>pdb|3FRX|A Chain A, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1. Length = 319

Iteration: 1
 Score = 51.2 bits (121), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 39/155 (25%), Positives = 63/155 (40%), Gaps = 12/155 (7%)
Query: 167 SPDGRRIACGSMDGTISVFDVTRAKFLHHLEGHFMPVRSLVYSPVDPRV--LFSASDDTH 224
           + DG      S D T+ ++DV   +      GH   V S+    +D +   + S S D  
Sbjct: 74  TADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVXSV---DIDKKASXIISGSRDKT 130
Query: 225 VHMYDAEGKSLVTAMSGHASWVLSVDASP------DGAAITTGSSDRTVKLWDLNMRAAM 278
           + ++  +G+ L T + GH  WV  V   P      D   I +  +D+ VK W+LN     
Sbjct: 131 IKVWTIKGQCLATLL-GHNDWVSQVRVVPNEKADDDSVTIISAGNDKXVKAWNLNQFQIE 189
Query: 279 QSMTNHTDQVWGVSFRPLGGRVVSVSDDKSISLYE 313
                H   +  ++  P G  + S   D  I L+ 
Sbjct: 190 ADFIGHNSNINTLTASPDGTLIASAGKDGEIXLWN 224

>pdb|1TRJ|A Chain A, Homology Model Of Yeast Rack1 Protein Fitted Into 11.7a Cryo-em Map Of Yeast 80s Ribosome Length = 314

Iteration: 1
 Score = 53.5 bits (127), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 63/251 (25%), Positives = 106/251 (42%), Gaps = 20/251 (7%)
Query: 20  VTWVPATETRPALLLTGSLDETVKLWR--PDDMQLE---RTNTGHCLGVVSVAAHPSGII 74
           VT +  +  +P LLL+ S D+T+  W+   DD +     R+  GH   V        G  
Sbjct: 20  VTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTADGAY 79
Query: 75  AASASLDSFVRVFDVDTNASIATLEASPSEVWQMQFDPKGTTLAVAGGGSASVKLWDTAT 134
           A SAS D  +R++DV T  +        S+V  +  D K + + ++G    ++K+W T  
Sbjct: 80  ALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMI-ISGSRDKTIKVW-TIK 137
Query: 135 WNLIATLSIPRPEGLKPTDKSSSKKFVLSVAWSPDGRRIACGSMDGTISVFDVTRAKFLH 194
              +ATL       L   D  S  + V +     D   I     D  +  +++ + +   
Sbjct: 138 GQCLATL-------LGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEA 190
Query: 195 HLEGHFMPVRSLVYSPVDPRVLFSASDDTHVHMYDAEGKSLVTAMSGHASWVLSVDASPD 254
              GH   + +L  SP D  ++ SA  D  + +++   K  +  +S     V S+  SP+
Sbjct: 191 DFIGHNSNINTLTASP-DGTLIASAGKDGEIMLWNLAAKKAMYTLSAQDE-VFSLAFSPN 248
Query: 255 ----GAAITTG 261
                AA  TG
Sbjct: 249 RYWLAAATATG 259

>pdb|1TRJ|A Chain A, Homology Model Of Yeast Rack1 Protein Fitted Into 11.7a Cryo-em Map Of Yeast 80s Ribosome Length = 314

Iteration: 1
 Score = 50.8 bits (120), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 39/155 (25%), Positives = 64/155 (41%), Gaps = 12/155 (7%)
Query: 167 SPDGRRIACGSMDGTISVFDVTRAKFLHHLEGHFMPVRSLVYSPVDPR--VLFSASDDTH 224
           + DG      S D T+ ++DV   +      GH   V S+    +D +  ++ S S D  
Sbjct: 74  TADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSV---DIDKKASMIISGSRDKT 130
Query: 225 VHMYDAEGKSLVTAMSGHASWVLSVDASP------DGAAITTGSSDRTVKLWDLNMRAAM 278
           + ++  +G+ L T + GH  WV  V   P      D   I +  +D+ VK W+LN     
Sbjct: 131 IKVWTIKGQCLATLL-GHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIE 189
Query: 279 QSMTNHTDQVWGVSFRPLGGRVVSVSDDKSISLYE 313
                H   +  ++  P G  + S   D  I L+ 
Sbjct: 190 ADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWN 224

>pdb|1L0Q|A Chain A, Tandem Yvtn Beta-Propeller And Pkd Domains From An Archaeal Surface Layer Protein Length = 391

Iteration: 1
 Score = 50.1 bits (118), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 56/215 (26%), Positives = 89/215 (41%), Gaps = 25/215 (11%)
Query: 84  VRVFDVDTNASIATLEASPSEVWQMQFDPKGTTLAVAGGGSASVKLWDTATWNLIATLSI 143
           + V DV +N   AT+    +    +   P GT + VA   S  V + DTAT N+IAT+  
Sbjct: 14  ISVIDVTSNKVTATIPVGSNPXGAV-ISPDGTKVYVANAHSNDVSIIDTATNNVIATV-- 70
Query: 144 PRPEGLKPTDKSSSKKFVLSVAWSPDGRRI-ACGSMDGTISVFDVTRAKFLHHLEGHFMP 202
             P G  P            VA SPDG+++        T+SV D T       ++    P
Sbjct: 71  --PAGSSP----------QGVAVSPDGKQVYVTNXASSTLSVIDTTSNTVAGTVKTGKSP 118
Query: 203 VRSLVYSPVDPRVLFSASDDTHVHMYDAEGKSLVTAMSGHASWVLSVDASPDGAAITTGS 262
           +  L  SP   ++  + + D  V + +   K+++          +SV  SP G A+T   
Sbjct: 119 L-GLALSPDGKKLYVTNNGDKTVSVINTVTKAVINT--------VSVGRSPKGIAVTPDG 169
Query: 263 SDRTVKLWDLNMRAAMQSMTNHTDQVWGVSFRPLG 297
           +   V  +D    + + ++TN       V   P G
Sbjct: 170 TKVYVANFDSXSISVIDTVTNSVIDTVKVEAAPSG 204

>pdb|4G56|B Chain B, Crystal Structure Of Full Length Prmt5/mep50 Complexes From Xenopus Laevis Length = 357

Iteration: 1
 Score = 49.3 bits (116), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 54/207 (26%), Positives = 83/207 (40%), Gaps = 14/207 (6%)
Query: 63  VVSVAAHPSGIIAASASLDSFVRVFDVDTNASIATLEASPSEVWQMQFDPKGTTLAVAGG 122
           V +++    G  A S   D  V+V+D+   A + +  A  SEV  +   P   T+ ++ G
Sbjct: 142 VKTLSVFSDGTQAVSGGKDFSVKVWDLSQKAVLKSYNAHSSEVNCVAACPGKDTIFLSCG 201
Query: 123 GSASVKLWDTATWNLIATLSIPRPEGLKPTDKSSSKKFVLSVAWSPDG-RRIACGSMDGT 181
               + LWDT            +P+     D  +S     SV W P+     ACG   G 
Sbjct: 202 EDGRILLWDTR-----------KPKPATRIDFCASDTIPTSVTWHPEKDDTFACGDETGN 250
Query: 182 ISVFDVTRAKFLHHLEGHFMPVRSLVYSPVDPRVLFSASDDTHVHMYDAEGKSLVTAMSG 241
           +S+ ++           H   +  L YS      L S S+D  V + DA+   +   +S 
Sbjct: 251 VSLVNIKNPDSAQTSAVHSQNITGLAYSYHSSPFLASISEDCTVAVLDADFSEVFRDLS- 309
Query: 242 HASWVLSVDASP-DGAAITTGSSDRTV 267
           H  +V  V  SP D +  TT   D  V
Sbjct: 310 HRDFVTGVAWSPLDHSKFTTVGWDHKV 336

>pdb|2XZM|R Chain R, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit In Complex With Initiation Factor 1. This File Contains The 40s Subunit And Initiation Factor For Molecule 1 Length = 343

Iteration: 1
 Score = 48.9 bits (115), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 36/129 (27%), Positives = 58/129 (44%), Gaps = 12/129 (9%)
Query: 196 LEGHFMPVRSLV-----YSPVDPRVLFSASDDTHV---HMYDAEGKSLV----TAMSGHA 243
           LEGH   V S+V         D  VL S S D  V    +Y+ E          A++GH 
Sbjct: 17  LEGHSDWVTSIVAGFSQKENEDSPVLISGSRDKTVMIWKLYEEEQNGYFGIPHKALTGHN 76
Query: 244 SWVLSVDASPDGAAITTGSSDRTVKLWDLNMRAAMQSMTNHTDQVWGVSFRPLGGRVVSV 303
            +V  +  S +     + S D+T++LWDL      +    H  +V+ V+F P   +++S 
Sbjct: 77  HFVSDLALSQENCFAISSSWDKTLRLWDLRTGTTYKRFVGHQSEVYSVAFSPDNRQILSA 136
Query: 304 SDDKSISLY 312
             ++ I L+
Sbjct: 137 GAEREIKLW 145

>pdb|3I2N|A Chain A, Crystal Structure Of Wd40 Repeats Protein Wdr92 Length = 357

Iteration: 1
 Score = 48.1 bits (113), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 52/206 (25%), Positives = 89/206 (43%), Gaps = 26/206 (12%)
Query: 4   AGLKSVENAHEESVWAVTWVPATETRPALLLTGSLDETVKLWRPDDMQLE-RTNTGHCLG 62
           A ++ V+  ++   W V +  A      ++  G  +  +KL+   +M L   TN  +  G
Sbjct: 154 ANMEPVQGENKRDCWTVAFGNAYNQEERVVCAGYDNGDIKLFDLRNMALRWETNIKN--G 211
Query: 63  VVSVAAHPSGI---IAASASLDSFVRVFDVDTN------ASIATLEASPSEVWQMQFDPK 113
           V S+      I      + SL+    VFD+ T       AS++  +A  S VWQ++  P+
Sbjct: 212 VCSLEFDRKDISMNKLVATSLEGKFHVFDMRTQHPTKGFASVSE-KAHKSTVWQVRHLPQ 270
Query: 114 GTTLAVAGGGSASVKLWDTATWNLIATLSIPRPEGLKP---------TDKSSSKKFVLSV 164
              L +  GG+  + LW    +      S    EG++           + + S + + S+
Sbjct: 271 NRELFLTAGGAGGLHLW---KYEYPIQRSKKDSEGIEMGVAGSVSLLQNVTLSTQPISSL 327
Query: 165 AWSPDGRRIA-CGSMDGTISVFDVTR 189
            WSPD R +  C S D T+ V  VT+
Sbjct: 328 DWSPDKRGLCVCSSFDQTVRVLIVTK 353

>pdb|2XYI|A Chain A, Crystal Structure Of Nurf55 In Complex With A H4 Peptide Length = 430

Iteration: 1
 Score = 47.8 bits (112), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 48/216 (22%), Positives = 91/216 (42%), Gaps = 20/216 (9%)
Query: 104 EVWQMQFDPKGTTLAVAGGGSASVKLWDTATWNLIATLSIPRPEGLKPTDKS--SSKKFV 161
           EV + ++ P+   +      S+ V ++D          S P P G    D      +K  
Sbjct: 130 EVNRARYMPQNACVIATKTPSSDVLVFD-----YTKHPSKPEPSGECQPDLRLRGHQKEG 184
Query: 162 LSVAWSPD-GRRIACGSMDGTISVFDVTRAKFLHH-------LEGHFMPVRSLVYSPVDP 213
             ++W+P+    +   S D TI ++D+      H          GH   V  + +  +  
Sbjct: 185 YGLSWNPNLNGYLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHE 244
Query: 214 RVLFSASDDTHVHMYDAEGKSLVT---AMSGHASWVLSVDASPDGAAI-TTGSSDRTVKL 269
            +  S +DD  + ++D    +       +  H + V  +  +P    I  TGS+D+TV L
Sbjct: 245 SLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVAL 304
Query: 270 WDL-NMRAAMQSMTNHTDQVWGVSFRPLGGRVVSVS 304
           WDL N++  + S  +H D+++ V + P    +++ S
Sbjct: 305 WDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASS 340

>pdb|2YBA|A Chain A, Crystal Structure Of Nurf55 In Complex With Histone H3 Length = 422

Iteration: 1
 Score = 47.8 bits (112), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 56/240 (23%), Positives = 94/240 (39%), Gaps = 45/240 (18%)
Query: 12  AHEESVWAVTWVPATETRPALLLTGSLDETVKLWR----PDDMQL---ERTNTGHCLGVV 64
            H++  + ++W P        LL+ S D T+ LW     P + ++   +   TGH   V 
Sbjct: 183 GHQKEGYGLSWNPNLN---GYLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVE 239
Query: 65  SVAAHP-SGIIAASASLDSFVRVFDVDTNASIA---TLEASPSEVWQMQFDPKGTTLAVA 120
            VA H     +  S + D  + ++D   N +     T++A  +EV  + F+P    +   
Sbjct: 240 DVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILAT 299
Query: 121 GGGSASVKLWDTATWNLIATLSIPRPEGLKPTDKSSSKKFVLSVAWSPDGRRI-ACGSMD 179
           G    +V LWD             R   LK     S K  +  V WSP    I A    D
Sbjct: 300 GSADKTVALWDL------------RNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTD 347
Query: 180 GTISVFDVTRAK----------------FLHHLEGHFMPVRSLVYSPVDPRVLFSASDDT 223
             + V+D+++                  F+H   GH   +    ++P +P ++ S S+D 
Sbjct: 348 RRLHVWDLSKIGEEQSTEDAEDGPPELLFIH--GGHTAKISDFSWNPNEPWIICSVSEDN 405

>pdb|2YBA|A Chain A, Crystal Structure Of Nurf55 In Complex With Histone H3 Length = 422

Iteration: 1
 Score = 47.4 bits (111), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 50/228 (21%), Positives = 98/228 (42%), Gaps = 21/228 (9%)
Query: 104 EVWQMQFDPKGTTLAVAGGGSASVKLWDTATWNLIATLSIPRPEGLKPTDKS--SSKKFV 161
           EV + ++ P+   +      S+ V ++D          S P P G    D      +K  
Sbjct: 134 EVNRARYMPQNACVIATKTPSSDVLVFD-----YTKHPSKPEPSGECQPDLRLRGHQKEG 188
Query: 162 LSVAWSPD-GRRIACGSMDGTISVFDVTRAKFLHH-------LEGHFMPVRSLVYSPVDP 213
             ++W+P+    +   S D TI ++D+      H          GH   V  + +  +  
Sbjct: 189 YGLSWNPNLNGYLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHE 248
Query: 214 RVLFSASDDTHVHMYDAEGKSLVT---AMSGHASWVLSVDASPDGAAI-TTGSSDRTVKL 269
            +  S +DD  + ++D    +       +  H + V  +  +P    I  TGS+D+TV L
Sbjct: 249 SLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVAL 308
Query: 270 WDL-NMRAAMQSMTNHTDQVWGVSFRPLGGRVVSVSD-DKSISLYEYS 315
           WDL N++  + S  +H D+++ V + P    +++ S  D+ + +++ S
Sbjct: 309 WDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLS 356

>pdb|3C99|A Chain A, Structural Basis Of Histone H4 Recognition By P55 Length = 432

Iteration: 1
 Score = 47.8 bits (112), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 50/228 (21%), Positives = 98/228 (42%), Gaps = 21/228 (9%)
Query: 104 EVWQMQFDPKGTTLAVAGGGSASVKLWDTATWNLIATLSIPRPEGLKPTDKS--SSKKFV 161
           EV + ++ P+   +      S+ V ++D          S P P G    D      +K  
Sbjct: 132 EVNRARYMPQNACVIATKTPSSDVLVFD-----YTKHPSKPEPSGECQPDLRLRGHQKEG 186
Query: 162 LSVAWSPD-GRRIACGSMDGTISVFDVTRAKFLHH-------LEGHFMPVRSLVYSPVDP 213
             ++W+P+    +   S D TI ++D+      H          GH   V  + +  +  
Sbjct: 187 YGLSWNPNLNGYLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHE 246
Query: 214 RVLFSASDDTHVHMYDAEGKSLVT---AMSGHASWVLSVDASPDGAAI-TTGSSDRTVKL 269
            +  S +DD  + ++D    +       +  H + V  +  +P    I  TGS+D+TV L
Sbjct: 247 SLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVAL 306
Query: 270 WDL-NMRAAMQSMTNHTDQVWGVSFRPLGGRVVSVSD-DKSISLYEYS 315
           WDL N++  + S  +H D+++ V + P    +++ S  D+ + +++ S
Sbjct: 307 WDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLS 354

>pdb|3ODT|A Chain A, Crystal Structure Of Wd40 Beta Propeller Domain Of Doa1 Length = 313

Iteration: 1
 Score = 46.6 bits (109), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 38/134 (28%), Positives = 62/134 (46%), Gaps = 7/134 (5%)
Query: 11  NAHEESVWAVTWVPATETRPALLLTGSLDETVKLWRPDDMQLERTNTGHCLGVVSVAAHP 70
            AH  SVW    V  +E +    LT S D+T+KLW+ D  ++ +T +G    VV   A  
Sbjct: 139 QAHNASVWDAKVVSFSENK---FLTASADKTIKLWQND--KVIKTFSGIHNDVVRHLAVV 193
Query: 71  SGIIAASASLDSFVRVFDVDTNASIATLEASPSEVWQMQFDPKGTTLAVAGGGSASVKLW 130
                 S S D  +++ D  T   + T E   S V+ ++  P G    V+ G   +V++W
Sbjct: 194 DDGHFISCSNDGLIKLVDXHTGDVLRTYEGHESFVYCIKLLPNGDI--VSCGEDRTVRIW 251
Query: 131 DTATWNLIATLSIP 144
                +L   +++P
Sbjct: 252 SKENGSLKQVITLP 265

>pdb|3ODT|A Chain A, Crystal Structure Of Wd40 Beta Propeller Domain Of Doa1 Length = 313

Iteration: 1
 Score = 42.7 bits (99), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 30/108 (27%), Positives = 48/108 (44%), Gaps = 3/108 (2%)
Query: 199 HFMPVRSLVYSPVDPRVLFSASDDTHVHMYDAEGKSLVTAMSGHASWVLSVDASPDGAAI 258
           H   VR L  + VD     S S+D  + + D     ++    GH S+V  +   P+G  +
Sbjct: 183 HNDVVRHL--AVVDDGHFISCSNDGLIKLVDXHTGDVLRTYEGHESFVYCIKLLPNGDIV 240
Query: 259 TTGSSDRTVKLWDLNMRAAMQSMTNHTDQVWGVSFRPLGGRVVSVSDD 306
           + G  DRTV++W     +  Q +T     +W V     G  +V  SD+
Sbjct: 241 SCGE-DRTVRIWSKENGSLKQVITLPAISIWSVDCXSNGDIIVGSSDN 287

>pdb|3ZWL|B Chain B, Structure Of Eukaryotic Translation Initiation Factor Eif3i Complex With Eif3b C-Terminus (655-700) Length = 369

Iteration: 1
 Score = 44.7 bits (104), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 36/124 (29%), Positives = 61/124 (49%), Gaps = 9/124 (7%)
Query: 196 LEGHFMPVRSLVYSPVDPRVLFSASDDTHVHM-YDAEGKSLVTAMSGHASWVLSVDASPD 254
           L GH  P+  + Y+  +  +LFS S D+   + Y   G+ L T + GH   + S+D    
Sbjct: 28  LTGHERPLTQVKYNK-EGDLLFSCSKDSSASVWYSLNGERLGT-LDGHTGTIWSIDVDCF 85
Query: 255 GAAITTGSSDRTVKLWDLNMRAAMQSMTNHTDQVWGVSFRPLGGRVVSVSDD-----KSI 309
                TGS+D ++KLWD++    + +  +    V  V F P G   +++ D+      SI
Sbjct: 86  TKYCVTGSADYSIKLWDVSNGQCVATWKSPV-PVKRVEFSPCGNYFLAILDNVMKNPGSI 144
Query: 310 SLYE 313
           ++YE
Sbjct: 145 NIYE 148

>pdb|2AQ5|A Chain A, Crystal Structure Of Murine Coronin-1 Length = 402

Iteration: 1
 Score = 44.7 bits (104), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 37/119 (31%), Positives = 55/119 (46%), Gaps = 10/119 (8%)
Query: 161 VLSVAWSP-DGRRIACGSMDGTISVFDVTRAKFLHHL-------EGHFMPVRSLVYSPVD 212
           VL +AW P +   IA GS D T+ V+++     +  L       EGH   V  + + P  
Sbjct: 84  VLDIAWXPHNDNVIASGSEDCTVMVWEIPDGGLVLPLREPVITLEGHTKRVGIVAWHPTA 143
Query: 213 PRVLFSASDDTHVHMYDAEGKSLVTAMSG--HASWVLSVDASPDGAAITTGSSDRTVKL 269
             VL SA  D  + ++D    + V  +    H   + SVD S DGA I T   D+ V++
Sbjct: 144 QNVLLSAGXDNVILVWDVGTGAAVLTLGPDVHPDTIYSVDWSRDGALICTSCRDKRVRV 202

>pdb|3GFC|A Chain A, Crystal Structure Of Histone-Binding Protein Rbbp4 Length = 425

Iteration: 1
 Score = 44.7 bits (104), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 51/230 (22%), Positives = 103/230 (44%), Gaps = 25/230 (10%)
Query: 104 EVWQMQFDPKGTTLAVAGGGSASVKLWDTATWNLIATLSIPRPEGLKPTDKS--SSKKFV 161
           EV + ++ P+   +      S+ V ++D          S P P G    D      +K  
Sbjct: 126 EVNRARYMPQNPCIIATKTPSSDVLVFD-----YTKHPSKPDPSGECNPDLRLRGHQKEG 180
Query: 162 LSVAWSPD-GRRIACGSMDGTISVFDVT---------RAKFLHHLEGHFMPVRSLVYSPV 211
             ++W+P+    +   S D TI ++D++          AK +    GH   V  + +  +
Sbjct: 181 YGLSWNPNLSGHLLSASDDHTICLWDISAVPKEGKVVDAKTI--FTGHTAVVEDVSWHLL 238
Query: 212 DPRVLFSASDDTHVHMYDAEGKSLVT---AMSGHASWVLSVDASPDGAAI-TTGSSDRTV 267
              +  S +DD  + ++D    +      ++  H + V  +  +P    I  TGS+D+TV
Sbjct: 239 HESLFGSVADDQKLMIWDTRSNNTSKPSHSVDAHTAEVNCLSFNPYSEFILATGSADKTV 298
Query: 268 KLWDL-NMRAAMQSMTNHTDQVWGVSFRPLGGRVVSVSD-DKSISLYEYS 315
            LWDL N++  + S  +H D+++ V + P    +++ S  D+ +++++ S
Sbjct: 299 ALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLNVWDLS 348

>pdb|2B4E|A Chain A, Crystal Structure Of Murine Coronin-1: Monoclinic Form Length = 402

Iteration: 1
 Score = 44.3 bits (103), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 37/119 (31%), Positives = 55/119 (46%), Gaps = 10/119 (8%)
Query: 161 VLSVAWSP-DGRRIACGSMDGTISVFDVTRAKFLHHL-------EGHFMPVRSLVYSPVD 212
           VL +AW P +   IA GS D T+ V+++     +  L       EGH   V  + + P  
Sbjct: 84  VLDIAWCPHNDNVIASGSEDCTVMVWEIPDGGLVLPLREPVITLEGHTKRVGIVAWHPTA 143
Query: 213 PRVLFSASDDTHVHMYDAEGKSLVTAMSG--HASWVLSVDASPDGAAITTGSSDRTVKL 269
             VL SA  D  + ++D    + V  +    H   + SVD S DGA I T   D+ V++
Sbjct: 144 QNVLLSAGCDNVILVWDVGTGAAVLTLGPDVHPDTIYSVDWSRDGALICTSCRDKRVRV 202

>pdb|2PM9|B Chain B, Crystal Structure Of Yeast Sec1331 VERTEX ELEMENT OF THE Copii Vesicular Coat Length = 297

Iteration: 1
 Score = 43.5 bits (101), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 64/274 (23%), Positives = 117/274 (42%), Gaps = 52/274 (18%)
Query: 76  ASASLDSFVRVFDVD--TNASIATLEASPSEVWQMQF-DPKGTTLAVAGGGSASVKLW-- 130
           A+ S D  +++F+V+  T+  I TL      VW++ +  PK  T+  +      V +W  
Sbjct: 25  ATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVMIWKE 84
Query: 131 DTATWNLIATLSIPRPEGLKPTDKSSSKKFVLSVAWSPD--GRRIACGSMDGTISVFDV- 187
           +   W+ IA  ++           S+S   V SV W+P   G  +   S DG +SV +  
Sbjct: 85  ENGRWSQIAVHAV----------HSAS---VNSVQWAPHEYGPMLLVASSDGKVSVVEFK 131
Query: 188 ---TRAKFLHHLEGHFMPVRSLVYSPV------------DPRVLFSASDDTHVHMY---- 228
              T +  +  ++ H + V S  ++P             + R   +   D  V ++    
Sbjct: 132 ENGTTSPII--IDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNS 189
Query: 229 DAEGKSLVTAMSGHASWVLSVDASPD---GAAITTGSSDRTVKLWDLN-----MRAAMQS 280
           DA+   L + + GH+ WV  V  SP     + + + S DRT  +W  +      +  +  
Sbjct: 190 DAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYMASVSQDRTCIIWTQDNEQGPWKKTLLK 249
Query: 281 MTNHTDQVWGVSFRPLGGRVVSVS-DDKSISLYE 313
                D +W  S+  L G V+++S  D  ++L++
Sbjct: 250 EEKFPDVLWRASW-SLSGNVLALSGGDNKVTLWK 282

>pdb|3F3P|A Chain A, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1, Space Group P21212 Length = 351

Iteration: 1
 Score = 43.1 bits (100), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 73/317 (23%), Positives = 133/317 (41%), Gaps = 48/317 (15%)
Query: 35  TGSLDETVKLWRPD----DMQLERTNTGHCLGVVSV--AAHPSGIIAASASLDSFVRVFD 88
           T S D+ +K+++ D    + +L  +   H   +V++  A+   G I ASAS D  V++++
Sbjct: 28  TCSSDQHIKVFKLDKDTSNWELSDSWRAHDSSIVAIDWASPEYGRIIASASYDKTVKLWE 87
Query: 89  VDTNAS---------IATLEASPSEVWQMQFDPKGTTLAVAG-GGSASVKLWDT------ 132
            D +           + TL  S   ++ ++F P    L +A  G    ++L+D       
Sbjct: 88  EDPDQEECSGRRWNKLCTLNDSKGSLYSVKFAPAHLGLKLACLGNDGILRLYDALEPSDL 147
Query: 133 ATWNLIA---TLSIPRPEGLKPTDKSSSKKFVLSVAWSPDG---RRIACGSMDGTISVFD 186
            +W L +    LSIP    L+         F LS  W P      ++A  +++  I ++ 
Sbjct: 148 RSWTLTSEXKVLSIPPANHLQ-------SDFCLS--WCPSRFSPEKLAVSALEQAI-IYQ 197
Query: 187 VTRAKFLH---HLEGHFMPVRSLVYSPVDPR---VLFSASDDTHVHMYDAEGKSLVTAMS 240
             +   LH    L GH   +RS+ ++P   R   ++ +   D  + ++    K    A  
Sbjct: 198 RGKDGKLHVAAKLPGHKSLIRSISWAPSIGRWYQLIATGCKDGRIRIFKITEKLSPLASE 257
Query: 241 GHASWVLSVDASPDGAAITTGSSD-RTVKLWDLNMRAAMQSMTNHTD---QVWGVSFRPL 296
              +     D S D      G SD  T +  +L     ++ ++ H D   +VW VS+   
Sbjct: 258 ESLTNSNXFDNSADVDXDAQGRSDSNTEEKAELQSNLQVELLSEHDDHNGEVWSVSWNLT 317
Query: 297 GGRVVSVSDDKSISLYE 313
           G  + S  DD  + L++
Sbjct: 318 GTILSSAGDDGKVRLWK 334

>pdb|2PM6|B Chain B, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE Copii Vesicular Coat, Native Version Length = 297

Iteration: 1
 Score = 43.1 bits (100), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 64/274 (23%), Positives = 117/274 (42%), Gaps = 52/274 (18%)
Query: 76  ASASLDSFVRVFDVD--TNASIATLEASPSEVWQMQF-DPKGTTLAVAGGGSASVKLW-- 130
           A+ S D  +++F+V+  T+  I TL      VW++ +  PK  T+  +      V +W  
Sbjct: 25  ATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLIWKE 84
Query: 131 DTATWNLIATLSIPRPEGLKPTDKSSSKKFVLSVAWSPD--GRRIACGSMDGTISVFDV- 187
           +   W+ IA  ++           S+S   V SV W+P   G  +   S DG +SV +  
Sbjct: 85  ENGRWSQIAVHAV----------HSAS---VNSVQWAPHEYGPLLLVASSDGKVSVVEFK 131
Query: 188 ---TRAKFLHHLEGHFMPVRSLVYSPV------------DPRVLFSASDDTHVHMY---- 228
              T +  +  ++ H + V S  ++P             + R   +   D  V ++    
Sbjct: 132 ENGTTSPII--IDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNS 189
Query: 229 DAEGKSLVTAMSGHASWVLSVDASPD---GAAITTGSSDRTVKLWDLN-----MRAAMQS 280
           DA+   L + + GH+ WV  V  SP     + + + S DRT  +W  +      +  +  
Sbjct: 190 DAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDNEQGPWKKTLLK 249
Query: 281 MTNHTDQVWGVSFRPLGGRVVSVS-DDKSISLYE 313
                D +W  S+  L G V+++S  D  ++L++
Sbjct: 250 EEKFPDVLWRASW-SLSGNVLALSGGDNKVTLWK 282

>pdb|2PM7|B Chain B, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE Copii Vesicular Coat, Selenomethionine Version Length = 297

Iteration: 1
 Score = 43.1 bits (100), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 65/278 (23%), Positives = 117/278 (42%), Gaps = 52/278 (18%)
Query: 72  GIIAASASLDSFVRVFDVD--TNASIATLEASPSEVWQMQF-DPKGTTLAVAGGGSASVK 128
           G   A+ S D  +++F+V+  T+  I TL      VW++ +  PK  T+  +      V 
Sbjct: 21  GKRXATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVX 80
Query: 129 LW--DTATWNLIATLSIPRPEGLKPTDKSSSKKFVLSVAWSPD--GRRIACGSMDGTISV 184
           +W  +   W+ IA  ++           S+S   V SV W+P   G  +   S DG +SV
Sbjct: 81  IWKEENGRWSQIAVHAV----------HSAS---VNSVQWAPHEYGPXLLVASSDGKVSV 127
Query: 185 FDV----TRAKFLHHLEGHFMPVRSLVYSPV------------DPRVLFSASDDTHVHMY 228
            +     T +  +  ++ H + V S  ++P             + R   +   D  V ++
Sbjct: 128 VEFKENGTTSPII--IDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIW 185
Query: 229 ----DAEGKSLVTAMSGHASWVLSVDASPD---GAAITTGSSDRTVKLWDLN-----MRA 276
               DA+   L + + GH+ WV  V  SP     +   + S DRT  +W  +      + 
Sbjct: 186 KYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYXASVSQDRTCIIWTQDNEQGPWKK 245
Query: 277 AMQSMTNHTDQVWGVSFRPLGGRVVSVS-DDKSISLYE 313
            +       D +W  S+  L G V+++S  D  ++L++
Sbjct: 246 TLLKEEKFPDVLWRASW-SLSGNVLALSGGDNKVTLWK 282

>pdb|3EWE|A Chain A, Crystal Structure Of The Nup85SEH1 COMPLEX Length = 349

Iteration: 1
 Score = 43.1 bits (100), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 74/319 (23%), Positives = 137/319 (42%), Gaps = 52/319 (16%)
Query: 35  TGSLDETVKLWRPD----DMQLERTNTGHCLGVVSV--AAHPSGIIAASASLDSFVRVFD 88
           T S D+ +K+++ D    + +L  +   H   +V++  A+   G I ASAS D  V++++
Sbjct: 26  TCSSDQHIKVFKLDKDTSNWELSDSWRAHDSSIVAIDWASPEYGRIIASASYDKTVKLWE 85
Query: 89  VDTNAS---------IATLEASPSEVWQMQFDPKGTTLAVAG-GGSASVKLWDT------ 132
            D +           + TL  S   ++ ++F P    L +A  G    ++L+D       
Sbjct: 86  EDPDQEECSGRRWNKLCTLNDSKGSLYSVKFAPAHLGLKLACLGNDGILRLYDALEPSDL 145
Query: 133 ATWNL---IATLSIPRPEGLKPTDKSSSKKFVLSVAWSPDG---RRIACGSMDGTISVFD 186
            +W L   +  LSIP    L+         F LS  W P      ++A  +++  I ++ 
Sbjct: 146 RSWTLTSEMKVLSIPPANHLQ-------SDFCLS--WCPSRFSPEKLAVSALEQAI-IYQ 195
Query: 187 VTRAKFLH---HLEGHFMPVRSLVYSPVDPR---VLFSASDDTHVHMYDAEGKSLVTAMS 240
             +   LH    L GH   +RS+ ++P   R   ++ +   D  + ++    K  ++ ++
Sbjct: 196 RGKDGKLHVAAKLPGHKSLIRSISWAPSIGRWYQLIATGCKDGRIRIFKITEK--LSPLA 253
Query: 241 GHASWVLS--VDASPDGAAITTGSSD-RTVKLWDLNMRAAMQSMTNHTD---QVWGVSFR 294
              S   S   D S D      G SD  T +  +L     ++ ++ H D   +VW VS+ 
Sbjct: 254 SEESLTNSNMFDNSADVDMDAQGRSDSNTEEKAELQSNLQVELLSEHDDHNGEVWSVSWN 313
Query: 295 PLGGRVVSVSDDKSISLYE 313
             G  + S  DD  + L++
Sbjct: 314 LTGTILSSAGDDGKVRLWK 332

>pdb|3F3F|A Chain A, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1, Space Group P21 Length = 351

Iteration: 1
 Score = 43.1 bits (100), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 74/319 (23%), Positives = 137/319 (42%), Gaps = 52/319 (16%)
Query: 35  TGSLDETVKLWRPD----DMQLERTNTGHCLGVVSV--AAHPSGIIAASASLDSFVRVFD 88
           T S D+ +K+++ D    + +L  +   H   +V++  A+   G I ASAS D  V++++
Sbjct: 28  TCSSDQHIKVFKLDKDTSNWELSDSWRAHDSSIVAIDWASPEYGRIIASASYDKTVKLWE 87
Query: 89  VDTNAS---------IATLEASPSEVWQMQFDPKGTTLAVAG-GGSASVKLWDT------ 132
            D +           + TL  S   ++ ++F P    L +A  G    ++L+D       
Sbjct: 88  EDPDQEECSGRRWNKLCTLNDSKGSLYSVKFAPAHLGLKLACLGNDGILRLYDALEPSDL 147
Query: 133 ATWNL---IATLSIPRPEGLKPTDKSSSKKFVLSVAWSPDG---RRIACGSMDGTISVFD 186
            +W L   +  LSIP    L+         F LS  W P      ++A  +++  I ++ 
Sbjct: 148 RSWTLTSEMKVLSIPPANHLQ-------SDFCLS--WCPSRFSPEKLAVSALEQAI-IYQ 197
Query: 187 VTRAKFLH---HLEGHFMPVRSLVYSPVDPR---VLFSASDDTHVHMYDAEGKSLVTAMS 240
             +   LH    L GH   +RS+ ++P   R   ++ +   D  + ++    K  ++ ++
Sbjct: 198 RGKDGKLHVAAKLPGHKSLIRSISWAPSIGRWYQLIATGCKDGRIRIFKITEK--LSPLA 255
Query: 241 GHASWVLS--VDASPDGAAITTGSSD-RTVKLWDLNMRAAMQSMTNHTD---QVWGVSFR 294
              S   S   D S D      G SD  T +  +L     ++ ++ H D   +VW VS+ 
Sbjct: 256 SEESLTNSNMFDNSADVDMDAQGRSDSNTEEKAELQSNLQVELLSEHDDHNGEVWSVSWN 315
Query: 295 PLGGRVVSVSDDKSISLYE 313
             G  + S  DD  + L++
Sbjct: 316 LTGTILSSAGDDGKVRLWK 334

>pdb|3CFS|B Chain B, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH Histone H4 Length = 414

Iteration: 1
 Score = 42.7 bits (99), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 56/240 (23%), Positives = 94/240 (39%), Gaps = 45/240 (18%)
Query: 12  AHEESVWAVTWVPATETRPALLLTGSLDETVKLWR----PDDMQL---ERTNTGHCLGVV 64
            H++  + ++W          LL+ S D TV LW     P + ++   +   TGH   V 
Sbjct: 177 GHQKEGYGLSW---NSNLSGHLLSASDDHTVCLWDINAGPKEGKIVDAKAIFTGHSAVVE 233
Query: 65  SVAAHP-SGIIAASASLDSFVRVFDVDTNASIA---TLEASPSEVWQMQFDPKGTTLAVA 120
            VA H     +  S + D  + ++D  +N +      ++A  +EV  + F+P    +   
Sbjct: 234 DVAWHLLHESLFGSVADDQKLMIWDTRSNTTSKPSHLVDAHTAEVNCLSFNPYSEFILAT 293
Query: 121 GGGSASVKLWDTATWNLIATLSIPRPEGLKPTDKSSSKKFVLSVAWSPDGRRI-ACGSMD 179
           G    +V LWD             R   LK     S K  +  V WSP    I A    D
Sbjct: 294 GSADKTVALWDL------------RNLKLKLHTFESHKDEIFQVHWSPHNETILASSGTD 341
Query: 180 GTISVFDVTRAK----------------FLHHLEGHFMPVRSLVYSPVDPRVLFSASDDT 223
             ++V+D+++                  F+H   GH   +    ++P +P V+ S S+D 
Sbjct: 342 RRLNVWDLSKIGEEQSAEDAEDGPPELLFIH--GGHTAKISDFSWNPNEPWVICSVSEDN 399

>pdb|3CFS|B Chain B, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH Histone H4 Length = 414

Iteration: 1
 Score = 41.2 bits (95), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 29/124 (23%), Positives = 62/124 (50%), Gaps = 6/124 (4%)
Query: 198 GHFMPVRSLVYSPVDPRVLFSASDDTHVHMYDAEGKSLVTA---MSGHASWVLSVDASPD 254
           GH   V  + +  +   +  S +DD  + ++D    +       +  H + V  +  +P 
Sbjct: 227 GHSAVVEDVAWHLLHESLFGSVADDQKLMIWDTRSNTTSKPSHLVDAHTAEVNCLSFNPY 286
Query: 255 GAAI-TTGSSDRTVKLWDL-NMRAAMQSMTNHTDQVWGVSFRPLGGRVVSVSD-DKSISL 311
              I  TGS+D+TV LWDL N++  + +  +H D+++ V + P    +++ S  D+ +++
Sbjct: 287 SEFILATGSADKTVALWDLRNLKLKLHTFESHKDEIFQVHWSPHNETILASSGTDRRLNV 346
Query: 312 YEYS 315
           ++ S
Sbjct: 347 WDLS 350

>pdb|3CFV|B Chain B, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH Histone H4 Length = 414

Iteration: 1
 Score = 42.7 bits (99), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 56/240 (23%), Positives = 94/240 (39%), Gaps = 45/240 (18%)
Query: 12  AHEESVWAVTWVPATETRPALLLTGSLDETVKLWR----PDDMQL---ERTNTGHCLGVV 64
            H++  + ++W          LL+ S D TV LW     P + ++   +   TGH   V 
Sbjct: 177 GHQKEGYGLSW---NSNLSGHLLSASDDHTVCLWDINAGPKEGKIVDAKAIFTGHSAVVE 233
Query: 65  SVAAHP-SGIIAASASLDSFVRVFDVDTNASIA---TLEASPSEVWQMQFDPKGTTLAVA 120
            VA H     +  S + D  + ++D  +N +      ++A  +EV  + F+P    +   
Sbjct: 234 DVAWHLLHESLFGSVADDQKLXIWDTRSNTTSKPSHLVDAHTAEVNCLSFNPYSEFILAT 293
Query: 121 GGGSASVKLWDTATWNLIATLSIPRPEGLKPTDKSSSKKFVLSVAWSPDGRRI-ACGSMD 179
           G    +V LWD             R   LK     S K  +  V WSP    I A    D
Sbjct: 294 GSADKTVALWDL------------RNLKLKLHTFESHKDEIFQVHWSPHNETILASSGTD 341
Query: 180 GTISVFDVTRAK----------------FLHHLEGHFMPVRSLVYSPVDPRVLFSASDDT 223
             ++V+D+++                  F+H   GH   +    ++P +P V+ S S+D 
Sbjct: 342 RRLNVWDLSKIGEEQSAEDAEDGPPELLFIH--GGHTAKISDFSWNPNEPWVICSVSEDN 399

>pdb|3CFV|B Chain B, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH Histone H4 Length = 414

Iteration: 1
 Score = 41.6 bits (96), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 29/124 (23%), Positives = 62/124 (50%), Gaps = 6/124 (4%)
Query: 198 GHFMPVRSLVYSPVDPRVLFSASDDTHVHMYDAEGKSLVTA---MSGHASWVLSVDASPD 254
           GH   V  + +  +   +  S +DD  + ++D    +       +  H + V  +  +P 
Sbjct: 227 GHSAVVEDVAWHLLHESLFGSVADDQKLXIWDTRSNTTSKPSHLVDAHTAEVNCLSFNPY 286
Query: 255 GAAI-TTGSSDRTVKLWDL-NMRAAMQSMTNHTDQVWGVSFRPLGGRVVSVSD-DKSISL 311
              I  TGS+D+TV LWDL N++  + +  +H D+++ V + P    +++ S  D+ +++
Sbjct: 287 SEFILATGSADKTVALWDLRNLKLKLHTFESHKDEIFQVHWSPHNETILASSGTDRRLNV 346
Query: 312 YEYS 315
           ++ S
Sbjct: 347 WDLS 350

>pdb|3JRP|A Chain A, Sec13 With Nup145c (Aa109-179) Insertion Blade Length = 379

Iteration: 1
 Score = 42.4 bits (98), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 64/274 (23%), Positives = 117/274 (42%), Gaps = 52/274 (18%)
Query: 76  ASASLDSFVRVFDVD--TNASIATLEASPSEVWQMQF-DPKGTTLAVAGGGSASVKLW-- 130
           A+ S D  +++F+V+  T+  I TL      VW++ +  PK  T+  +      V +W  
Sbjct: 27  ATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLIWKE 86
Query: 131 DTATWNLIATLSIPRPEGLKPTDKSSSKKFVLSVAWSPD--GRRIACGSMDGTISVFDV- 187
           +   W+ IA  ++           S+S   V SV W+P   G  +   S DG +SV +  
Sbjct: 87  ENGRWSQIAVHAV----------HSAS---VNSVQWAPHEYGPLLLVASSDGKVSVVEFK 133
Query: 188 ---TRAKFLHHLEGHFMPVRSLVYSPV------------DPRVLFSASDDTHVHMY---- 228
              T +  +  ++ H + V S  ++P             + R   +   D  V ++    
Sbjct: 134 ENGTTSPII--IDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNS 191
Query: 229 DAEGKSLVTAMSGHASWVLSVDASPD---GAAITTGSSDRTVKLWDLN-----MRAAMQS 280
           DA+   L + + GH+ WV  V  SP     + + + S DRT  +W  +      +  +  
Sbjct: 192 DAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDNEQGPWKKTLLK 251
Query: 281 MTNHTDQVWGVSFRPLGGRVVSVS-DDKSISLYE 313
                D +W  S+  L G V+++S  D  ++L++
Sbjct: 252 EEKFPDVLWRASW-SLSGNVLALSGGDNKVTLWK 284

>pdb|1R5M|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Sif2 Length = 425

Iteration: 1
 Score = 41.6 bits (96), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 40/155 (25%), Positives = 65/155 (41%), Gaps = 12/155 (7%)
Query: 132 TATWNLIATLSIPRPEGLKPTDKSS--------SKKFVLSVAWSPDGRRIACGSMDGTIS 183
           T  WN+I+   +   E LK T  SS             + V W  D + +  G   G I 
Sbjct: 173 TILWNVISGTVMQHFE-LKETGGSSINAENHSGDGSLGVDVEWVDDDKFVIPGPK-GAIF 230
Query: 184 VFDVTRAKFLHHLEGHFMPVRSLVYSPVDPRVLFSASDDTHVHMYDAEGKSLVTAMSGHA 243
           V+ +T       L GH  P+  L ++  + ++L SASDD  + ++     +      GH+
Sbjct: 231 VYQITEKTPTGKLIGHHGPISVLEFNDTN-KLLLSASDDGTLRIWHGGNGNSQNCFYGHS 289
Query: 244 SWVLSVDASPDGAAITTGSSDRTVKLWDLNMRAAM 278
             ++S     D   I+  S D +V+LW L     +
Sbjct: 290 QSIVSASWVGDDKVISC-SMDGSVRLWSLKQNTLL 323

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	315
3ow8_A	321	WD repeat-containing protein 61; structural genomi	100.0
1vyh_C	410	Platelet-activating factor acetylhydrolase IB alph	100.0
1got_B	340	GT-beta; complex (GTP-binding/transducer), G prote	100.0
2ynn_A	304	Coatomer subunit beta'; protein transport, peptide	100.0
2pbi_B	354	Guanine nucleotide-binding protein subunit beta 5;	100.0
3iz6_a	380	40S ribosomal protein RACK1 (RACK1); eukaryotic ri	100.0
3frx_A	319	Guanine nucleotide-binding protein subunit beta- l	100.0
4gqb_B	344	Methylosome protein 50; TIM barrel, beta-propeller	100.0
3fm0_A	345	Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r	100.0
4ery_A	312	WD repeat-containing protein 5; WD40, WIN motif, b	100.0
2hes_X	330	YDR267CP; beta-propeller, WD40 repeat, biosyntheti	100.0
1erj_A	393	Transcriptional repressor TUP1; beta-propeller, tr	100.0
4g56_B	357	MGC81050 protein; protein arginine methyltransfera	100.0
2xzm_R	343	RACK1; ribosome, translation; 3.93A {Tetrahymena t	100.0
1nr0_A	611	Actin interacting protein 1; beta propeller, WD40	100.0
4aow_A	340	Guanine nucleotide-binding protein subunit beta-2;	100.0
3zwl_B	369	Eukaryotic translation initiation factor 3 subuni;	100.0
1nr0_A	611	Actin interacting protein 1; beta propeller, WD40	100.0
1sq9_A	397	Antiviral protein SKI8; WD repeat, beta-transducin	100.0
3dm0_A	694	Maltose-binding periplasmic protein fused with RAC	100.0
2ynn_A	304	Coatomer subunit beta'; protein transport, peptide	100.0
2ymu_A	577	WD-40 repeat protein; unknown function, two domain	100.0
3k26_A	366	Polycomb protein EED; WD40, structural genomics, N	100.0
4gqb_B	344	Methylosome protein 50; TIM barrel, beta-propeller	100.0
1r5m_A	425	SIR4-interacting protein SIF2; transcription corep	100.0
1vyh_C	410	Platelet-activating factor acetylhydrolase IB alph	100.0
2ymu_A	577	WD-40 repeat protein; unknown function, two domain	100.0
2pm9_A	416	Protein WEB1, protein transport protein SEC31; bet	100.0
1gxr_A	337	ESG1, transducin-like enhancer protein 1; transcri	100.0
3i2n_A	357	WD repeat-containing protein 92; WD40 repeats, str	100.0
3ei3_B	383	DNA damage-binding protein 2; UV-damage, DDB, nucl	100.0
1k8k_C	372	P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-	100.0
2pm9_A	416	Protein WEB1, protein transport protein SEC31; bet	100.0
3ow8_A	321	WD repeat-containing protein 61; structural genomi	100.0
4g56_B	357	MGC81050 protein; protein arginine methyltransfera	100.0
3odt_A	313	Protein DOA1; ubiquitin, nuclear protein; HET: MSE	100.0
4h5i_A	365	Guanine nucleotide-exchange factor SEC12; copii ve	100.0
4gga_A	420	P55CDC, cell division cycle protein 20 homolog; ce	100.0
4aez_A	401	CDC20, WD repeat-containing protein SLP1; cell cyc	100.0
3gre_A	437	Serine/threonine-protein kinase VPS15; seven-blade	100.0
3dwl_C	377	Actin-related protein 2/3 complex subunit 1; prope	100.0
1got_B	340	GT-beta; complex (GTP-binding/transducer), G prote	100.0
2j04_B	524	YDR362CP, TAU91; beta propeller, type 2 promoters,	100.0
4e54_B	435	DNA damage-binding protein 2; beta barrel, double	100.0
2pm7_B	297	Protein transport protein SEC13, protein transport	100.0
3iz6_a	380	40S ribosomal protein RACK1 (RACK1); eukaryotic ri	100.0
4ggc_A	318	P55CDC, cell division cycle protein 20 homolog; ce	100.0
3vl1_A	420	26S proteasome regulatory subunit RPN14; beta-prop	100.0
3sfz_A	1249	APAF-1, apoptotic peptidase activating factor 1; a	100.0
3vl1_A	420	26S proteasome regulatory subunit RPN14; beta-prop	100.0
2pm7_B	297	Protein transport protein SEC13, protein transport	100.0
2pbi_B	354	Guanine nucleotide-binding protein subunit beta 5;	100.0
1pgu_A	615	Actin interacting protein 1; WD repeat, seven-blad	100.0
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	100.0
3f3f_A	351	Nucleoporin SEH1; structural protein, protein comp	100.0
3v7d_B	464	Cell division control protein 4; WD 40 domain, pho	100.0
1yfq_A	342	Cell cycle arrest protein BUB3; WD repeat WD40 rep	100.0
1p22_A	435	F-BOX/WD-repeat protein 1A; ubiquitination, degrad	100.0
3fm0_A	345	Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r	100.0
4a11_B	408	DNA excision repair protein ERCC-8; DNA binding pr	100.0
1gxr_A	337	ESG1, transducin-like enhancer protein 1; transcri	100.0
3frx_A	319	Guanine nucleotide-binding protein subunit beta- l	100.0
3bg1_A	316	Protein SEC13 homolog; NPC, transport, WD repeat,	100.0
3bg1_A	316	Protein SEC13 homolog; NPC, transport, WD repeat,	100.0
2hes_X	330	YDR267CP; beta-propeller, WD40 repeat, biosyntheti	100.0
3dw8_B	447	Serine/threonine-protein phosphatase 2A 55 kDa RE	100.0
4ery_A	312	WD repeat-containing protein 5; WD40, WIN motif, b	100.0
2ovr_B	445	FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40	100.0
2ovr_B	445	FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40	100.0
1erj_A	393	Transcriptional repressor TUP1; beta-propeller, tr	100.0
3mmy_A	368	MRNA export factor; mRNA export, nuclear protein;	100.0
2oaj_A	902	Protein SNI1; WD40 repeat, beta propeller, endocyt	100.0
2xzm_R	343	RACK1; ribosome, translation; 3.93A {Tetrahymena t	100.0
2oaj_A	902	Protein SNI1; WD40 repeat, beta propeller, endocyt	100.0
1pgu_A	615	Actin interacting protein 1; WD repeat, seven-blad	100.0
3v7d_B	464	Cell division control protein 4; WD 40 domain, pho	100.0
2aq5_A	402	Coronin-1A; WD40 repeat, 7-bladed beta-propeller,	100.0
3jrp_A	379	Fusion protein of protein transport protein SEC13	100.0
3sfz_A	1249	APAF-1, apoptotic peptidase activating factor 1; a	100.0
3jrp_A	379	Fusion protein of protein transport protein SEC13	100.0
1k8k_C	372	P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-	100.0
3ei3_B	383	DNA damage-binding protein 2; UV-damage, DDB, nucl	100.0
4aow_A	340	Guanine nucleotide-binding protein subunit beta-2;	100.0
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	100.0
3dwl_C	377	Actin-related protein 2/3 complex subunit 1; prope	100.0
3bws_A	433	Protein LP49; two-domain, immunoglobulin-like, 7-b	100.0
3vu4_A	355	KMHSV2; beta-propeller fold, protein transport; 2.	100.0
3k26_A	366	Polycomb protein EED; WD40, structural genomics, N	100.0
1sq9_A	397	Antiviral protein SKI8; WD repeat, beta-transducin	100.0
3dm0_A	694	Maltose-binding periplasmic protein fused with RAC	100.0
3dw8_B	447	Serine/threonine-protein phosphatase 2A 55 kDa RE	100.0
2xyi_A	430	Probable histone-binding protein CAF1; transcripti	100.0
3i2n_A	357	WD repeat-containing protein 92; WD40 repeats, str	100.0
1r5m_A	425	SIR4-interacting protein SIF2; transcription corep	100.0
1l0q_A	391	Surface layer protein; SLP, S-layer, 7-bladed beta	100.0
3zwl_B	369	Eukaryotic translation initiation factor 3 subuni;	100.0
2vdu_B	450	TRNA (guanine-N(7)-)-methyltransferase- associated	100.0
3gre_A	437	Serine/threonine-protein kinase VPS15; seven-blade	100.0
3odt_A	313	Protein DOA1; ubiquitin, nuclear protein; HET: MSE	100.0
2xyi_A	430	Probable histone-binding protein CAF1; transcripti	100.0
4gga_A	420	P55CDC, cell division cycle protein 20 homolog; ce	100.0
4a11_B	408	DNA excision repair protein ERCC-8; DNA binding pr	100.0
3jro_A	753	Fusion protein of protein transport protein SEC13	100.0
2j04_A	588	TAU60, YPL007P, hypothetical protein YPL007C; beta	100.0
4aez_A	401	CDC20, WD repeat-containing protein SLP1; cell cyc	100.0
4e54_B	435	DNA damage-binding protein 2; beta barrel, double	100.0
3lrv_A	343	PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu	100.0
3jro_A	753	Fusion protein of protein transport protein SEC13	100.0
2j04_B	524	YDR362CP, TAU91; beta propeller, type 2 promoters,	100.0
1yfq_A	342	Cell cycle arrest protein BUB3; WD repeat WD40 rep	100.0
4h5i_A	365	Guanine nucleotide-exchange factor SEC12; copii ve	100.0
3vu4_A	355	KMHSV2; beta-propeller fold, protein transport; 2.	100.0
4gq1_A	393	NUP37; propeller, transport protein; 2.40A {Schizo	100.0
2w18_A	356	PALB2, fancn, partner and localizer of BRCA2; fanc	100.0
2j04_A	588	TAU60, YPL007P, hypothetical protein YPL007C; beta	100.0
2aq5_A	402	Coronin-1A; WD40 repeat, 7-bladed beta-propeller,	100.0
2vdu_B	450	TRNA (guanine-N(7)-)-methyltransferase- associated	100.0
1p22_A	435	F-BOX/WD-repeat protein 1A; ubiquitination, degrad	100.0
4ggc_A	318	P55CDC, cell division cycle protein 20 homolog; ce	100.0
3lrv_A	343	PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu	100.0
3mmy_A	368	MRNA export factor; mRNA export, nuclear protein;	100.0
1l0q_A	391	Surface layer protein; SLP, S-layer, 7-bladed beta	100.0
3f3f_A	351	Nucleoporin SEH1; structural protein, protein comp	100.0
1nir_A	543	Nitrite reductase; hemoprotein, denitrification, d	100.0
2w18_A	356	PALB2, fancn, partner and localizer of BRCA2; fanc	99.98
2hqs_A	415	Protein TOLB; TOLB, PAL, TOL, transport protein-li	99.98
3bws_A	433	Protein LP49; two-domain, immunoglobulin-like, 7-b	99.97
1nir_A	543	Nitrite reductase; hemoprotein, denitrification, d	99.97
4gq1_A	393	NUP37; propeller, transport protein; 2.40A {Schizo	99.97
3u4y_A	331	Uncharacterized protein; structural genomics, PSI-	99.97
1ri6_A	343	Putative isomerase YBHE; 7-bladed propeller, enzym	99.97
2hqs_A	415	Protein TOLB; TOLB, PAL, TOL, transport protein-li	99.97
2ecf_A	741	Dipeptidyl peptidase IV; prolyl oligopeptidase fam	99.96
3vgz_A	353	Uncharacterized protein YNCE; beta-propeller, prot	99.96
2ojh_A	297	Uncharacterized protein ATU1656/AGR_C_3050; TOLB,	99.96
1pby_B	337	Quinohemoprotein amine dehydrogenase 40 kDa subuni	99.96
3o4h_A	582	Acylamino-acid-releasing enzyme; alpha/beta hydrol	99.96
1xfd_A	723	DIP, dipeptidyl aminopeptidase-like protein 6, dip	99.96
3hfq_A	347	Uncharacterized protein LP_2219; Q88V64_lacpl, NES	99.95
2z3z_A	706	Dipeptidyl aminopeptidase IV; peptidase family S9,	99.94
1k32_A	1045	Tricorn protease; protein degradation, substrate g	99.94
1ri6_A	343	Putative isomerase YBHE; 7-bladed propeller, enzym	99.94
1k32_A	1045	Tricorn protease; protein degradation, substrate g	99.94
2ecf_A	741	Dipeptidyl peptidase IV; prolyl oligopeptidase fam	99.94
3scy_A	361	Hypothetical bacterial 6-phosphogluconolactonase;	99.94
3vgz_A	353	Uncharacterized protein YNCE; beta-propeller, prot	99.94
2z3z_A	706	Dipeptidyl aminopeptidase IV; peptidase family S9,	99.93
1jmx_B	349	Amine dehydrogenase; oxidoreductase; HET: TRQ HEC;	99.93
3u4y_A	331	Uncharacterized protein; structural genomics, PSI-	99.93
2ojh_A	297	Uncharacterized protein ATU1656/AGR_C_3050; TOLB,	99.93
1z68_A	719	Fibroblast activation protein, alpha subunit; sepr	99.93
1xfd_A	723	DIP, dipeptidyl aminopeptidase-like protein 6, dip	99.93
2oit_A	434	Nucleoporin 214KDA; NH2 terminal domain of NUP214/	99.92
3hfq_A	347	Uncharacterized protein LP_2219; Q88V64_lacpl, NES	99.92
3o4h_A	582	Acylamino-acid-releasing enzyme; alpha/beta hydrol	99.92
1pby_B	337	Quinohemoprotein amine dehydrogenase 40 kDa subuni	99.91
3pe7_A	388	Oligogalacturonate lyase; seven-bladed beta-propel	99.91
2oit_A	434	Nucleoporin 214KDA; NH2 terminal domain of NUP214/	99.91
1jof_A	365	Carboxy-CIS,CIS-muconate cyclase; beta-propeller,	99.91
3scy_A	361	Hypothetical bacterial 6-phosphogluconolactonase;	99.9
3fvz_A	329	Peptidyl-glycine alpha-amidating monooxygenase; be	99.88
1q7f_A	286	NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL	99.88
1z68_A	719	Fibroblast activation protein, alpha subunit; sepr	99.88
3c5m_A	396	Oligogalacturonate lyase; blade-shaped beta-propel	99.87
2oiz_A	361	Aromatic amine dehydrogenase, large subunit; oxido	99.87
3fvz_A	329	Peptidyl-glycine alpha-amidating monooxygenase; be	99.87
4a5s_A	740	Dipeptidyl peptidase 4 soluble form; hydrolase, ty	99.87
3azo_A	662	Aminopeptidase; POP family, hydrolase; 2.00A {Stre	99.87
1jof_A	365	Carboxy-CIS,CIS-muconate cyclase; beta-propeller,	99.86
1q7f_A	286	NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL	99.85
2dg1_A	333	DRP35, lactonase; beta propeller, hydrolase; 1.72A	99.85
2gop_A	347	Trilobed protease; beta propeller, open velcro, hy	99.84
1jmx_B	349	Amine dehydrogenase; oxidoreductase; HET: TRQ HEC;	99.84
3azo_A	662	Aminopeptidase; POP family, hydrolase; 2.00A {Stre	99.82
3dsm_A	328	Uncharacterized protein bacuni_02894; seven_blated	99.82
3pe7_A	388	Oligogalacturonate lyase; seven-bladed beta-propel	99.82
4a5s_A	740	Dipeptidyl peptidase 4 soluble form; hydrolase, ty	99.82
2z2n_A	299	Virginiamycin B lyase; seven-bladed beta-propeller	99.81
1rwi_B	270	Serine/threonine-protein kinase PKND; beta propell	99.81
2oiz_A	361	Aromatic amine dehydrogenase, large subunit; oxido	99.81
3e5z_A	296	Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco	99.81
1qks_A	567	Cytochrome CD1 nitrite reductase; enzyme, oxidored	99.8
1rwi_B	270	Serine/threonine-protein kinase PKND; beta propell	99.8
2xdw_A	710	Prolyl endopeptidase; alpha/beta-hydrolase, amnesi	99.79
3no2_A	276	Uncharacterized protein; six-bladed beta-propeller	99.78
3c5m_A	396	Oligogalacturonate lyase; blade-shaped beta-propel	99.78
3e5z_A	296	Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco	99.77
3no2_A	276	Uncharacterized protein; six-bladed beta-propeller	99.76
2qc5_A	300	Streptogramin B lactonase; beta propeller, lyase;	99.76
3dsm_A	328	Uncharacterized protein bacuni_02894; seven_blated	99.75
2xdw_A	710	Prolyl endopeptidase; alpha/beta-hydrolase, amnesi	99.75
1pjx_A	314	Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries	99.75
2dg1_A	333	DRP35, lactonase; beta propeller, hydrolase; 1.72A	99.74
2gop_A	347	Trilobed protease; beta propeller, open velcro, hy	99.74
2bkl_A	695	Prolyl endopeptidase; mechanistic study, celiac sp	99.73
3hrp_A	409	Uncharacterized protein; NP_812590.1, structural g	99.72
2mad_H	373	Methylamine dehydrogenase (heavy subunit); oxidore	99.72
2bkl_A	695	Prolyl endopeptidase; mechanistic study, celiac sp	99.72
3sjl_D	386	Methylamine dehydrogenase heavy chain; MAUG, C-hem	99.72
2z2n_A	299	Virginiamycin B lyase; seven-bladed beta-propeller	99.71
1qks_A	567	Cytochrome CD1 nitrite reductase; enzyme, oxidored	99.68
1yr2_A	741	Prolyl oligopeptidase; prolyl endopeptidase, mecha	99.68
1pjx_A	314	Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries	99.67
3g4e_A	297	Regucalcin; six bladed beta-propeller, gluconolcat	99.67
2qc5_A	300	Streptogramin B lactonase; beta propeller, lyase;	99.66
3c75_H	426	MADH, methylamine dehydrogenase heavy chain; coppe	99.61
3hrp_A	409	Uncharacterized protein; NP_812590.1, structural g	99.61
1yr2_A	741	Prolyl oligopeptidase; prolyl endopeptidase, mecha	99.61
3g4e_A	297	Regucalcin; six bladed beta-propeller, gluconolcat	99.61
2mad_H	373	Methylamine dehydrogenase (heavy subunit); oxidore	99.6
2ghs_A	326	AGR_C_1268P; regucalcin, structural genomics, join	99.58
1xip_A	388	Nucleoporin NUP159; beta-propeller, transport prot	99.56
2ghs_A	326	AGR_C_1268P; regucalcin, structural genomics, join	99.56
3dr2_A	305	Exported gluconolactonase; gluconolactonase SMP-30	99.54
3iuj_A	693	Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas	99.54
1xip_A	388	Nucleoporin NUP159; beta-propeller, transport prot	99.51
2qe8_A	343	Uncharacterized protein; structural genomics, join	99.5
3iuj_A	693	Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas	99.5
2qe8_A	343	Uncharacterized protein; structural genomics, join	99.5
3sjl_D	386	Methylamine dehydrogenase heavy chain; MAUG, C-hem	99.49
1mda_H	368	Methylamine dehydrogenase (heavy subunit); electro	99.49
3c75_H	426	MADH, methylamine dehydrogenase heavy chain; coppe	99.48
1kb0_A	677	Quinohemoprotein alcohol dehydrogenase; beta-prope	99.45
1npe_A	267	Nidogen, entactin; glycoprotein, basement membrane	99.44
1yiq_A	689	Quinohemoprotein alcohol dehydrogenase; electron t	99.42
1kb0_A	677	Quinohemoprotein alcohol dehydrogenase; beta-prope	99.39
2hz6_A	369	Endoplasmic reticulum to nucleus signalling 1 isof	99.39
3dr2_A	305	Exported gluconolactonase; gluconolactonase SMP-30	99.39
2ece_A	462	462AA long hypothetical selenium-binding protein;	99.37
3q7m_A	376	Lipoprotein YFGL, BAMB; beta-propeller, BAM comple	99.36
1yiq_A	689	Quinohemoprotein alcohol dehydrogenase; electron t	99.36
1mda_H	368	Methylamine dehydrogenase (heavy subunit); electro	99.34
3q7m_A	376	Lipoprotein YFGL, BAMB; beta-propeller, BAM comple	99.32
2hz6_A	369	Endoplasmic reticulum to nucleus signalling 1 isof	99.3
2iwa_A	266	Glutamine cyclotransferase; pyroglutamate, acyltra	99.29
1fwx_A	595	Nitrous oxide reductase; beta-propeller domain, cu	99.29
3hxj_A	330	Pyrrolo-quinoline quinone; all beta protein. incom	99.26
2iwa_A	266	Glutamine cyclotransferase; pyroglutamate, acyltra	99.25
1npe_A	267	Nidogen, entactin; glycoprotein, basement membrane	99.25
3hxj_A	330	Pyrrolo-quinoline quinone; all beta protein. incom	99.25
2ece_A	462	462AA long hypothetical selenium-binding protein;	99.23
3nol_A	262	Glutamine cyclotransferase; beta-propeller, glutam	99.21
2p4o_A	306	Hypothetical protein; putative lactonase, structur	99.18
3v64_C	349	Agrin; beta propeller, laminin-G, signaling, prote	99.17
3v65_B	386	Low-density lipoprotein receptor-related protein;	99.16
3nol_A	262	Glutamine cyclotransferase; beta-propeller, glutam	99.14
1kv9_A	668	Type II quinohemoprotein alcohol dehydrogenase; el	99.14
3nok_A	268	Glutaminyl cyclase; beta-propeller, cyclotransfera	99.13
3v64_C	349	Agrin; beta propeller, laminin-G, signaling, prote	99.1
3mbr_X	243	Glutamine cyclotransferase; beta-propeller; 1.44A	99.1
2fp8_A	322	Strictosidine synthase; six bladed beta propeller	99.09
3mbr_X	243	Glutamine cyclotransferase; beta-propeller; 1.44A	99.08
4a2l_A	795	BT_4663, two-component system sensor histidine kin	99.06
1kv9_A	668	Type II quinohemoprotein alcohol dehydrogenase; el	99.06
3nok_A	268	Glutaminyl cyclase; beta-propeller, cyclotransfera	99.04
3v65_B	386	Low-density lipoprotein receptor-related protein;	99.04
1ijq_A	316	LDL receptor, low-density lipoprotein receptor; be	99.03
1fwx_A	595	Nitrous oxide reductase; beta-propeller domain, cu	99.03
4a2l_A	795	BT_4663, two-component system sensor histidine kin	99.02
1k3i_A	656	Galactose oxidase precursor; blade beta propeller,	99.01
3p5b_L	400	Low density lipoprotein receptor variant; B-propel	99.0
2ad6_A	571	Methanol dehydrogenase subunit 1; PQQ configuratio	98.98
2ad6_A	571	Methanol dehydrogenase subunit 1; PQQ configuratio	98.98
3sov_A	318	LRP-6, low-density lipoprotein receptor-related pr	98.94
1w6s_A	599	Methanol dehydrogenase subunit 1; anisotropic, ele	98.92
1ijq_A	316	LDL receptor, low-density lipoprotein receptor; be	98.9
2fp8_A	322	Strictosidine synthase; six bladed beta propeller	98.9
1flg_A	582	Protein (quinoprotein ethanol dehydrogenase); supe	98.87
3sov_A	318	LRP-6, low-density lipoprotein receptor-related pr	98.86
3tc9_A	430	Hypothetical hydrolase; 6-bladed beta-propeller, i	98.83
1flg_A	582	Protein (quinoprotein ethanol dehydrogenase); supe	98.82
3qqz_A	255	Putative uncharacterized protein YJIK; MCSG, PSI-2	98.82
3m0c_C	791	LDL receptor, low-density lipoprotein receptor; pr	98.82
3p5b_L	400	Low density lipoprotein receptor variant; B-propel	98.81
1w6s_A	599	Methanol dehydrogenase subunit 1; anisotropic, ele	98.8
3v9f_A	781	Two-component system sensor histidine kinase/RESP	98.79
3tc9_A	430	Hypothetical hydrolase; 6-bladed beta-propeller, i	98.73
3v9f_A	781	Two-component system sensor histidine kinase/RESP	98.73
1k3i_A	656	Galactose oxidase precursor; blade beta propeller,	98.68
4hw6_A	433	Hypothetical protein, IPT/TIG domain protein; puta	98.68
3qqz_A	255	Putative uncharacterized protein YJIK; MCSG, PSI-2	98.64
4hw6_A	433	Hypothetical protein, IPT/TIG domain protein; puta	98.63
4a0p_A	628	LRP6, LRP-6, low-density lipoprotein receptor-rela	98.63
1n7d_A	699	LDL receptor, low-density lipoprotein receptor; fa	98.63
3m0c_C	791	LDL receptor, low-density lipoprotein receptor; pr	98.6
2p4o_A	306	Hypothetical protein; putative lactonase, structur	98.6
2xe4_A	751	Oligopeptidase B; hydrolase-inhibitor complex, hyd	98.56
3s94_A	619	LRP-6, low-density lipoprotein receptor-related pr	98.55
4a0p_A	628	LRP6, LRP-6, low-density lipoprotein receptor-rela	98.55
3kya_A	496	Putative phosphatase; structural genomics, joint c	98.52
3amr_A	355	3-phytase; beta-propeller, phytate, MYO-inositol h	98.5
2xe4_A	751	Oligopeptidase B; hydrolase-inhibitor complex, hyd	98.49
3s94_A	619	LRP-6, low-density lipoprotein receptor-related pr	98.46
1n7d_A	699	LDL receptor, low-density lipoprotein receptor; fa	98.37
3kya_A	496	Putative phosphatase; structural genomics, joint c	98.36
2xbg_A	327	YCF48-like protein; photosynthesis, photosystem II	98.34
2p9w_A	334	MAL S 1 allergenic protein; beta propeller; 1.35A	98.3
3amr_A	355	3-phytase; beta-propeller, phytate, MYO-inositol h	98.1
2ism_A	352	Putative oxidoreductase; BL41XU spring-8, bladed b	98.07
2p9w_A	334	MAL S 1 allergenic protein; beta propeller; 1.35A	98.06
3ei3_A	1158	DNA damage-binding protein 1; UV-damage, DDB, nucl	97.97
2vpj_A	301	Kelch-like protein 12; adaptor protein, WNT signal	97.79
3ii7_A	306	Kelch-like protein 7; protein-binding, kelch-repea	97.77
2vpj_A	301	Kelch-like protein 12; adaptor protein, WNT signal	97.75
2xbg_A	327	YCF48-like protein; photosynthesis, photosystem II	97.69
2xn4_A	302	Kelch-like protein 2; structural protein, cytoskel	97.64
4asc_A	315	Kelch repeat and BTB domain-containing protein 5;	97.57
2xn4_A	302	Kelch-like protein 2; structural protein, cytoskel	97.53
3ii7_A	306	Kelch-like protein 7; protein-binding, kelch-repea	97.53
2xzh_A	365	Clathrin heavy chain 1; endocytosis, endocytosis i	97.49
3a9g_A	354	Putative uncharacterized protein; PQQ dependent de	97.49
3sre_A	355	PON1, serum paraoxonase; directed evolution, 6-bla	97.45
2ism_A	352	Putative oxidoreductase; BL41XU spring-8, bladed b	97.44
4asc_A	315	Kelch repeat and BTB domain-containing protein 5;	97.37
2g8s_A	353	Glucose/sorbosone dehydrogenases; bladed beta-prop	97.34
1zgk_A	308	Kelch-like ECH-associated protein 1; beta-propelle	97.27
1zgk_A	308	Kelch-like ECH-associated protein 1; beta-propelle	97.21
2woz_A	318	Kelch repeat and BTB domain-containing protein 10;	97.18
3ei3_A	1158	DNA damage-binding protein 1; UV-damage, DDB, nucl	97.17
3sre_A	355	PON1, serum paraoxonase; directed evolution, 6-bla	97.15
1bpo_A	494	Protein (clathrin); clathrin endocytosis beta-prop	97.13
2woz_A	318	Kelch repeat and BTB domain-containing protein 10;	96.79
3pbp_A	452	Nucleoporin NUP82; beta-propeller, mRNA export, mR	96.78
1cru_A	454	Protein (soluble quinoprotein glucose dehydrogena;	96.7
1xi4_A	1630	Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle	96.63
2uvk_A	357	YJHT; unknown function, hypothetical protein, sial	96.61
3pbp_A	452	Nucleoporin NUP82; beta-propeller, mRNA export, mR	96.54
3s25_A	302	Hypothetical 7-bladed beta-propeller-like protein;	96.49
2be1_A	339	Serine/threonine-protein kinase/endoribonuclease;	96.24
3a9g_A	354	Putative uncharacterized protein; PQQ dependent de	96.19
3das_A	347	Putative oxidoreductase; aldose sugar dehydrogenas	96.05
2uvk_A	357	YJHT; unknown function, hypothetical protein, sial	96.05
2zwa_A	695	Leucine carboxyl methyltransferase 2; HET: SAH CIT	95.61
2zwa_A	695	Leucine carboxyl methyltransferase 2; HET: SAH CIT	95.53
1tl2_A	236	L10, protein (tachylectin-2); animal lectin, horse	95.3
2g8s_A	353	Glucose/sorbosone dehydrogenases; bladed beta-prop	95.24
1tl2_A	236	L10, protein (tachylectin-2); animal lectin, horse	95.21
3ott_A	758	Two-component system sensor histidine kinase; beta	94.77
2be1_A	339	Serine/threonine-protein kinase/endoribonuclease;	93.4
3qhy_B	282	Beta-lactamase inhibitory protein II; enyzme-inhib	92.8
3sbq_A	638	Nitrous-oxide reductase; beta-propeller, cupredoxi	92.62
2xzh_A	365	Clathrin heavy chain 1; endocytosis, endocytosis i	92.35
1cru_A	454	Protein (soluble quinoprotein glucose dehydrogena;	92.35
3sbq_A	638	Nitrous-oxide reductase; beta-propeller, cupredoxi	91.44
3das_A	347	Putative oxidoreductase; aldose sugar dehydrogenas	90.97
1xi4_A	1630	Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle	89.82
1bpo_A	494	Protein (clathrin); clathrin endocytosis beta-prop	88.94
3qhy_B	282	Beta-lactamase inhibitory protein II; enyzme-inhib	87.94
3b7f_A	394	Glycosyl hydrolase, BNR repeat; 7-bladed beta-prop	87.49
3s25_A	302	Hypothetical 7-bladed beta-propeller-like protein;	87.23
2wg3_C	463	Hedgehog-interacting protein; lipoprotein, develop	86.64
4gq2_M	950	Nucleoporin NUP120; beta propeller alpha helical,	85.77
3q6k_A	381	43.2 kDa salivary protein; beta propeller, binding	84.47
3ott_A	758	Two-component system sensor histidine kinase; beta	83.67

>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}

Probab=100.00  E-value=1.2e-54  Score=363.26  Aligned_cols=292  Identities=40%  Similarity=0.768  Sum_probs=262.1

Q ss_pred             hhhccccceEEEEEeecCCCCCcEEEEeeCCCcEEEEcCCCCcc--eeeccccccceEEEEeCCCCCEEEEeeCCCeEEE
Q 021247            9 VENAHEESVWAVTWVPATETRPALLLTGSLDETVKLWRPDDMQL--ERTNTGHCLGVVSVAAHPSGIIAASASLDSFVRV   86 (315)
Q Consensus         9 ~~~~h~~~v~~v~~~~~~~~~~~~l~sgs~d~~v~~w~~~~~~~--~~~~~~h~~~v~~~~~~~~g~~l~s~~~d~~i~~   86 (315)
                      ...+|++.|++|+|+|.......+|+|||.|++|++|+....+.  ...+.+|..+|.++.+++++.++++++.|++|++
T Consensus        27 ~~~~H~~~V~~v~~~~~~~~~~~~l~tgs~D~~v~vW~~~~~~~~~~~~l~gh~~~v~~~~~~~~~~~l~s~s~D~~i~l  106 (321)
T 3ow8_A           27 QEQAHDDAIWSVAWGTNKKENSETVVTGSLDDLVKVWKWRDERLDLQWSLEGHQLGVVSVDISHTLPIAASSSLDAHIRL  106 (321)
T ss_dssp             ETTSSSSCEEEEEEC-------CEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECSSSSEEEEEETTSEEEE
T ss_pred             ecccCCCcEEEEEEecCCCCCCCEEEEEcCCCCEEEEECCCCCeeeeeeeccCCCCEEEEEECCCCCEEEEEeCCCcEEE
Confidence            35699999999999986543446899999999999999865543  4457899999999999999999999999999999


Q ss_pred             EECCCCceeEEeeCCcccEEEEEECCCCCeEEEEecCCCeEEEEecCCcceeeeecCCCCCCCCCCccCCCCcceEEEEE
Q 021247           87 FDVDTNASIATLEASPSEVWQMQFDPKGTTLAVAGGGSASVKLWDTATWNLIATLSIPRPEGLKPTDKSSSKKFVLSVAW  166 (315)
Q Consensus        87 w~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~  166 (315)
                      ||+.+++.+..+..+...+..++|+|+++.+ ++++.++.|++||+++++....+..             +...+.+++|
T Consensus       107 Wd~~~~~~~~~~~~~~~~~~~~~~spdg~~l-~~g~~dg~v~i~~~~~~~~~~~~~~-------------~~~~v~~~~~  172 (321)
T 3ow8_A          107 WDLENGKQIKSIDAGPVDAWTLAFSPDSQYL-ATGTHVGKVNIFGVESGKKEYSLDT-------------RGKFILSIAY  172 (321)
T ss_dssp             EETTTTEEEEEEECCTTCCCCEEECTTSSEE-EEECTTSEEEEEETTTCSEEEEEEC-------------SSSCEEEEEE
T ss_pred             EECCCCCEEEEEeCCCccEEEEEECCCCCEE-EEEcCCCcEEEEEcCCCceeEEecC-------------CCceEEEEEE
Confidence            9999999999998888899999999999865 6788999999999998776655532             2345899999


Q ss_pred             CCCCCEEEEecCCCcEEEEEcccceeeeeecCCccceEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCeeEEEeecccccE
Q 021247          167 SPDGRRIACGSMDGTISVFDVTRAKFLHHLEGHFMPVRSLVYSPVDPRVLFSASDDTHVHMYDAEGKSLVTAMSGHASWV  246 (315)
Q Consensus       167 ~~~~~~l~~~s~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~i  246 (315)
                      +|++++|++|+.|+.|++||+++++.+..+.+|..+|.+++|+| ++++|++++.|+.|++||++.+..+..+.+|...|
T Consensus       173 spdg~~lasg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~sp-d~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v  251 (321)
T 3ow8_A          173 SPDGKYLASGAIDGIINIFDIATGKLLHTLEGHAMPIRSLTFSP-DSQLLVTASDDGYIKIYDVQHANLAGTLSGHASWV  251 (321)
T ss_dssp             CTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCCCEEEECT-TSCEEEEECTTSCEEEEETTTCCEEEEECCCSSCE
T ss_pred             CCCCCEEEEEcCCCeEEEEECCCCcEEEEEcccCCceeEEEEcC-CCCEEEEEcCCCeEEEEECCCcceeEEEcCCCCce
Confidence            99999999999999999999999999999999999999999999 67899999999999999999999999999999999


Q ss_pred             EEEEEcCCCCeEEEEeCCCcEEEEecCccceehcccccccceEEEEEeeCCCEEEEEeCCCcEEEeecC
Q 021247          247 LSVDASPDGAAITTGSSDRTVKLWDLNMRAAMQSMTNHTDQVWGVSFRPLGGRVVSVSDDKSISLYEYS  315 (315)
Q Consensus       247 ~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~i~i~~~~  315 (315)
                      .+++|+|++++|++++.|++|++||+++++.+.++.+|.+.|++++|+|++++|++++.|++|+|||..
T Consensus       252 ~~~~~sp~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~h~~~v~~v~~s~~g~~l~s~~~d~~i~vwd~p  320 (321)
T 3ow8_A          252 LNVAFCPDDTHFVSSSSDKSVKVWDVGTRTCVHTFFDHQDQVWGVKYNGNGSKIVSVGDDQEIHIYDCP  320 (321)
T ss_dssp             EEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTCCEEEEECC
T ss_pred             EEEEECCCCCEEEEEeCCCcEEEEeCCCCEEEEEEcCCCCcEEEEEECCCCCEEEEEeCCCeEEEEeCC
Confidence            999999999999999999999999999999999999999999999999999999999999999999963

>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1

Probab=100.00  E-value=1.5e-53  Score=368.52  Aligned_cols=288  Identities=25%  Similarity=0.417  Sum_probs=267.8

Q ss_pred             hhhccccceEEEEEeecCCCCCcEEEEeeCCCcEEEEcCCCCcceeeccccccceEEEEeCCCCCEEEEeeCCCeEEEEE
Q 021247            9 VENAHEESVWAVTWVPATETRPALLLTGSLDETVKLWRPDDMQLERTNTGHCLGVVSVAAHPSGIIAASASLDSFVRVFD   88 (315)
Q Consensus         9 ~~~~h~~~v~~v~~~~~~~~~~~~l~sgs~d~~v~~w~~~~~~~~~~~~~h~~~v~~~~~~~~g~~l~s~~~d~~i~~w~   88 (315)
                      .+.+|.++|++++|+|...    +|++|+.||+|++||..+.+..+.+.+|...|.+++|+|+|.++++|+.|++|++||
T Consensus       103 ~l~gh~~~V~~~~~~p~~~----~l~s~s~Dg~i~vwd~~~~~~~~~l~~h~~~V~~v~~~~~~~~l~sgs~D~~i~iwd  178 (410)
T 1vyh_C          103 ALSGHRSPVTRVIFHPVFS----VMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLLASCSADMTIKLWD  178 (410)
T ss_dssp             EEECCSSCEEEEEECSSSS----EEEEEESSSCEEEEETTTCCCCEEECCCSSCEEEEEECTTSSEEEEEETTSCCCEEE
T ss_pred             eecccCCcEEEEEEcCCCC----EEEEEeCCCeEEEEECCCCcEEEEEeccCCcEEEEEEcCCCCEEEEEeCCCeEEEEe
Confidence            3568999999999999765    799999999999999999998899999999999999999999999999999999999


Q ss_pred             CCCCceeEEeeCCcccEEEEEECCCCCeEEEEecCCCeEEEEecCCcceeeeecCCCCCCCCCCccCCCCcceEEEEECC
Q 021247           89 VDTNASIATLEASPSEVWQMQFDPKGTTLAVAGGGSASVKLWDTATWNLIATLSIPRPEGLKPTDKSSSKKFVLSVAWSP  168 (315)
Q Consensus        89 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~  168 (315)
                      +.+++++..+..|...|.+++|+|++..+ ++++.|++|++||+++++.+..+.             .|...|.++.++|
T Consensus       179 ~~~~~~~~~~~~h~~~V~~v~~~p~~~~l-~s~s~D~~i~~wd~~~~~~~~~~~-------------~h~~~v~~~~~~~  244 (410)
T 1vyh_C          179 FQGFECIRTMHGHDHNVSSVSIMPNGDHI-VSASRDKTIKMWEVQTGYCVKTFT-------------GHREWVRMVRPNQ  244 (410)
T ss_dssp             TTSSCEEECCCCCSSCEEEEEECSSSSEE-EEEETTSEEEEEETTTCCEEEEEE-------------CCSSCEEEEEECT
T ss_pred             CCCCceeEEEcCCCCCEEEEEEeCCCCEE-EEEeCCCeEEEEECCCCcEEEEEe-------------CCCccEEEEEECC
Confidence            99999999999999999999999998855 688899999999999888776663             2445699999999


Q ss_pred             CCCEEEEecCCCcEEEEEcccceeeeeecCCccceEEEEEcCCC-------------------CcEEEEEeCCCeEEEEe
Q 021247          169 DGRRIACGSMDGTISVFDVTRAKFLHHLEGHFMPVRSLVYSPVD-------------------PRVLFSASDDTHVHMYD  229 (315)
Q Consensus       169 ~~~~l~~~s~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~-------------------~~~l~s~~~d~~i~~wd  229 (315)
                      ++++|++|+.|+.|++||+.+++....+.+|...|.++.|+|..                   +.++++|+.|+.|++||
T Consensus       245 ~g~~l~s~s~D~~v~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~sgs~D~~i~iwd  324 (410)
T 1vyh_C          245 DGTLIASCSNDQTVRVWVVATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWD  324 (410)
T ss_dssp             TSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEEEEE
T ss_pred             CCCEEEEEcCCCeEEEEECCCCceeeEecCCCceEEEEEEcCcccccchhhhccccccccCCCCCEEEEEeCCCeEEEEE
Confidence            99999999999999999999999999999999999999999842                   56899999999999999


Q ss_pred             CCCCeeEEEeecccccEEEEEEcCCCCeEEEEeCCCcEEEEecCccceehcccccccceEEEEEeeCCCEEEEEeCCCcE
Q 021247          230 AEGKSLVTAMSGHASWVLSVDASPDGAAITTGSSDRTVKLWDLNMRAAMQSMTNHTDQVWGVSFRPLGGRVVSVSDDKSI  309 (315)
Q Consensus       230 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~i  309 (315)
                      ++.+..+..+.+|..+|.+++|+|++++|++|+.|++|++||+..++.+.++.+|...|++++|+|++.+|++++.|++|
T Consensus       325 ~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~D~~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~sgs~D~~i  404 (410)
T 1vyh_C          325 VSTGMCLMTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLNAHEHFVTSLDFHKTAPYVVTGSVDQTV  404 (410)
T ss_dssp             TTTTEEEEEEECCSSCEEEEEECSSSSCEEEEETTTEEEEECCTTSCCCEEEECCSSCEEEEEECSSSSCEEEEETTSEE
T ss_pred             CCCCceEEEEECCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCceEEEEcCCCCcEEEEEEcCCCCEEEEEeCCCcE
Confidence            99999999999999999999999999999999999999999999999899999999999999999999999999999999


Q ss_pred             EEeec
Q 021247          310 SLYEY  314 (315)
Q Consensus       310 ~i~~~  314 (315)
                      +||+.
T Consensus       405 ~vW~~  409 (410)
T 1vyh_C          405 KVWEC  409 (410)
T ss_dssp             EEEC-
T ss_pred             EEEeC
Confidence            99986

>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*

Probab=100.00  E-value=2.4e-51  Score=346.20  Aligned_cols=286  Identities=20%  Similarity=0.324  Sum_probs=257.8

Q ss_pred             hhhhccccceEEEEEeecCCCCCcEEEEeeCCCcEEEEcCCCCcceeeccccccceEEEEeCCCCCEEEEeeCCCeEEEE
Q 021247            8 SVENAHEESVWAVTWVPATETRPALLLTGSLDETVKLWRPDDMQLERTNTGHCLGVVSVAAHPSGIIAASASLDSFVRVF   87 (315)
Q Consensus         8 ~~~~~h~~~v~~v~~~~~~~~~~~~l~sgs~d~~v~~w~~~~~~~~~~~~~h~~~v~~~~~~~~g~~l~s~~~d~~i~~w   87 (315)
                      ..+.+|.+.|++++|+|++.    +|++|+.||+|++||..+.+....+..|...|.+++|+|+|.++++++.|+.|++|
T Consensus        49 ~~l~gH~~~v~~~~~s~d~~----~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~v~iw  124 (340)
T 1got_B           49 RTLRGHLAKIYAMHWGTDSR----LLLSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIY  124 (340)
T ss_dssp             EEECCCSSCEEEEEECTTSS----EEEEEETTTEEEEEETTTCCEEEEEECSSSCEEEEEECTTSSEEEEEETTCEEEEE
T ss_pred             eeecCCCCceEEEEECCCCC----EEEEEeCCCcEEEEECCCCCcceEeecCCccEEEEEECCCCCEEEEEeCCCeEEEE
Confidence            44679999999999999765    79999999999999998888888888999999999999999999999999999999


Q ss_pred             ECCCCc----eeEEeeCCcccEEEEEECCCCCeEEEEecCCCeEEEEecCCcceeeeecCCCCCCCCCCccCCCCcceEE
Q 021247           88 DVDTNA----SIATLEASPSEVWQMQFDPKGTTLAVAGGGSASVKLWDTATWNLIATLSIPRPEGLKPTDKSSSKKFVLS  163 (315)
Q Consensus        88 ~~~~~~----~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~  163 (315)
                      ++.+..    ....+..|...|.++.|+|++.  +++++.|++|++||+++++.+..+.             .|...|.+
T Consensus       125 ~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~--l~s~s~d~~i~~wd~~~~~~~~~~~-------------~h~~~v~~  189 (340)
T 1got_B          125 NLKTREGNVRVSRELAGHTGYLSCCRFLDDNQ--IVTSSGDTTCALWDIETGQQTTTFT-------------GHTGDVMS  189 (340)
T ss_dssp             ETTTCSBSCEEEEEEECCSSCEEEEEEEETTE--EEEEETTSCEEEEETTTTEEEEEEC-------------CCSSCEEE
T ss_pred             ECccCCCcceeEEEecCCCccEEEEEECCCCc--EEEEECCCcEEEEECCCCcEEEEEc-------------CCCCceEE
Confidence            998753    4556778999999999998764  5678899999999999888776653             24456999


Q ss_pred             EEECCCCCEEEEecCCCcEEEEEcccceeeeeecCCccceEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCeeEEEee--c
Q 021247          164 VAWSPDGRRIACGSMDGTISVFDVTRAKFLHHLEGHFMPVRSLVYSPVDPRVLFSASDDTHVHMYDAEGKSLVTAMS--G  241 (315)
Q Consensus       164 ~~~~~~~~~l~~~s~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~--~  241 (315)
                      ++|+|++++|++|+.|+.|++||+++++....+.+|...|.+++|+| ++.+|++++.|+.|++||++..+.+..+.  .
T Consensus       190 ~~~~~~~~~l~sg~~d~~v~~wd~~~~~~~~~~~~h~~~v~~v~~~p-~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~~  268 (340)
T 1got_B          190 LSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFP-NGNAFATGSDDATCRLFDLRADQELMTYSHDN  268 (340)
T ss_dssp             EEECTTSSEEEEEETTSCEEEEETTTCSEEEEECCCSSCEEEEEECT-TSSEEEEEETTSCEEEEETTTTEEEEEECCTT
T ss_pred             EEECCCCCEEEEEeCCCcEEEEECCCCeeEEEEcCCcCCEEEEEEcC-CCCEEEEEcCCCcEEEEECCCCcEEEEEccCC
Confidence            99999999999999999999999999999999999999999999999 67899999999999999999887766554  2


Q ss_pred             ccccEEEEEEcCCCCeEEEEeCCCcEEEEecCccceehcccccccceEEEEEeeCCCEEEEEeCCCcEEEee
Q 021247          242 HASWVLSVDASPDGAAITTGSSDRTVKLWDLNMRAAMQSMTNHTDQVWGVSFRPLGGRVVSVSDDKSISLYE  313 (315)
Q Consensus       242 ~~~~i~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~i~i~~  313 (315)
                      +...|.+++|+|++++|++|+.|+.|++||+..++.+..+.+|...|++++|+|+|.+|++++.|++|+|||
T Consensus       269 ~~~~v~~~~~s~~g~~l~~g~~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~s~D~~i~iWd  340 (340)
T 1got_B          269 IICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN  340 (340)
T ss_dssp             CCSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEEC
T ss_pred             cccceEEEEECCCCCEEEEECCCCeEEEEEcccCcEeeEeecCCCcEEEEEEcCCCCEEEEEcCCccEEecC
Confidence            345799999999999999999999999999999888889999999999999999999999999999999997

>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A

Probab=100.00  E-value=1.6e-50  Score=335.96  Aligned_cols=293  Identities=23%  Similarity=0.350  Sum_probs=257.6

Q ss_pred             ccchhhhhhccccceEEEEEeecCCCCCcEEEEeeCCCcEEEEcCCCCcceeeccccccceEEEEeCCCCCEEEEeeCCC
Q 021247            3 FAGLKSVENAHEESVWAVTWVPATETRPALLLTGSLDETVKLWRPDDMQLERTNTGHCLGVVSVAAHPSGIIAASASLDS   82 (315)
Q Consensus         3 ~~~~~~~~~~h~~~v~~v~~~~~~~~~~~~l~sgs~d~~v~~w~~~~~~~~~~~~~h~~~v~~~~~~~~g~~l~s~~~d~   82 (315)
                      +..+.....+|.+.|++++|+|.++    +|++|+.||+|++||..+.+..+.+.+|..+|.++.|+|+++++++++.|+
T Consensus         2 ~l~~~~~~~~h~~~V~~~~fsp~~~----~l~s~~~dg~v~lWd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~d~   77 (304)
T 2ynn_A            2 KLDIKKTFSNRSDRVKGIDFHPTEP----WVLTTLYSGRVELWNYETQVEVRSIQVTETPVRAGKFIARKNWIIVGSDDF   77 (304)
T ss_dssp             CCCCEEEEEEECSCEEEEEECSSSS----EEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEEEGGGTEEEEEETTS
T ss_pred             cceeEEeecCCCCceEEEEECCCCC----EEEEEcCCCcEEEEECCCCceeEEeeccCCcEEEEEEeCCCCEEEEECCCC
Confidence            3456667889999999999999875    799999999999999999888888889999999999999999999999999


Q ss_pred             eEEEEECCCCceeEEeeCCcccEEEEEECCCCCeEEEEecCCCeEEEEecCCccee-eeecCCCCCCCCCCccCCCCcce
Q 021247           83 FVRVFDVDTNASIATLEASPSEVWQMQFDPKGTTLAVAGGGSASVKLWDTATWNLI-ATLSIPRPEGLKPTDKSSSKKFV  161 (315)
Q Consensus        83 ~i~~w~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~i  161 (315)
                      +|++||+.+++.+..+..|...|.+++|+|+++. +++|+.|++|++||+++.... ..+             ..|...|
T Consensus        78 ~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~-l~sgs~D~~v~lWd~~~~~~~~~~~-------------~~h~~~v  143 (304)
T 2ynn_A           78 RIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPY-VLSGSDDLTVKLWNWENNWALEQTF-------------EGHEHFV  143 (304)
T ss_dssp             EEEEEETTTCCEEEEEECCSSCEEEEEECSSSSE-EEEEETTSCEEEEEGGGTTEEEEEE-------------CCCCSCE
T ss_pred             EEEEEECCCCcEEEEEeCCCCcEEEEEEcCCCCE-EEEECCCCeEEEEECCCCcchhhhh-------------cccCCcE
Confidence            9999999999999999999999999999999885 468899999999999875333 222             2355669


Q ss_pred             EEEEECC-CCCEEEEecCCCcEEEEEcccceeeeeec-CCccceEEEEEcCC-CCcEEEEEeCCCeEEEEeCCCCeeEEE
Q 021247          162 LSVAWSP-DGRRIACGSMDGTISVFDVTRAKFLHHLE-GHFMPVRSLVYSPV-DPRVLFSASDDTHVHMYDAEGKSLVTA  238 (315)
Q Consensus       162 ~~~~~~~-~~~~l~~~s~dg~i~i~d~~~~~~~~~~~-~~~~~v~~~~~~~~-~~~~l~s~~~d~~i~~wd~~~~~~~~~  238 (315)
                      .+++|+| ++..|++|+.|+.|++||+++......+. +|...+..+.|+|. ++.+|++++.|+.|++||+++++.+..
T Consensus       144 ~~v~~~p~~~~~l~sgs~D~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~D~~i~iWd~~~~~~~~~  223 (304)
T 2ynn_A          144 MCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVAT  223 (304)
T ss_dssp             EEEEECTTCTTEEEEEETTSEEEEEETTCSSCSEEEECCCTTCEEEEEECCSTTCCEEEEEETTSEEEEEETTTTEEEEE
T ss_pred             EEEEECCCCCCEEEEEeCCCeEEEEECCCCCccceeccCCcCcEEEEEEEEcCCCCEEEEEcCCCeEEEEeCCCCcccee
Confidence            9999999 67899999999999999998776655543 56678999999874 567999999999999999999999999


Q ss_pred             eecccccEEEEEEcCCCCeEEEEeCCCcEEEEecCccceehcccccccceEEEEEeeCCC--EEEEEeCCCcEEEeec
Q 021247          239 MSGHASWVLSVDASPDGAAITTGSSDRTVKLWDLNMRAAMQSMTNHTDQVWGVSFRPLGG--RVVSVSDDKSISLYEY  314 (315)
Q Consensus       239 ~~~~~~~i~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~--~l~s~~~d~~i~i~~~  314 (315)
                      +.+|...|.+++|+|++++|++|+.||+|++||+++++..+++..|.+.+++++|+|++.  +++++++|| +.+|++
T Consensus       224 ~~~h~~~v~~~~~~p~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~asg~~~g-~~~~~~  300 (304)
T 2ynn_A          224 LEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKVEKTLNVGLERSWCIATHPTGRKNYIASGFDNG-FTVLSL  300 (304)
T ss_dssp             EECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCCEEEEECCSSSSEEEEEECTTCGGGCEEEEETTE-EEEEEC
T ss_pred             eCCCCCCEEEEEECCCCCEEEEEcCCCeEEEEECCCCceeeeccCCCccEEEEEECCCCCceEEEEecCCc-eEEEEe
Confidence            999999999999999999999999999999999999999999999999999999999886  466666555 556654

>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}

Probab=100.00  E-value=7.8e-50  Score=338.65  Aligned_cols=287  Identities=23%  Similarity=0.348  Sum_probs=255.7

Q ss_pred             hhhhccccceEEEEEeecCCCCCcEEEEeeCCCcEEEEcCCCCcceeeccccccceEEEEeCCCCCEEEEeeCCCeEEEE
Q 021247            8 SVENAHEESVWAVTWVPATETRPALLLTGSLDETVKLWRPDDMQLERTNTGHCLGVVSVAAHPSGIIAASASLDSFVRVF   87 (315)
Q Consensus         8 ~~~~~h~~~v~~v~~~~~~~~~~~~l~sgs~d~~v~~w~~~~~~~~~~~~~h~~~v~~~~~~~~g~~l~s~~~d~~i~~w   87 (315)
                      ..+.+|.+.|++++|+|++.    +|+|||.||+|++||..+.+....+..|...|.+++|+|+|.++++++.|+.+++|
T Consensus        58 ~~l~gH~~~V~~~~~s~d~~----~l~s~s~Dg~v~vWd~~~~~~~~~~~~~~~~v~~~~~sp~g~~lasg~~d~~i~v~  133 (354)
T 2pbi_B           58 RTLKGHGNKVLCMDWCKDKR----RIVSSSQDGKVIVWDSFTTNKEHAVTMPCTWVMACAYAPSGCAIACGGLDNKCSVY  133 (354)
T ss_dssp             EEEECCSSCEEEEEECTTSS----EEEEEETTSEEEEEETTTCCEEEEEECSSSCCCEEEECTTSSEEEEESTTSEEEEE
T ss_pred             EEecCCCCeEEEEEECCCCC----EEEEEeCCCeEEEEECCCCCcceEEecCCCCEEEEEECCCCCEEEEeeCCCCEEEE
Confidence            34679999999999999764    79999999999999998888777788888999999999999999999999999999


Q ss_pred             ECCCC------ceeEEeeCCcccEEEEEECCCCCeEEEEecCCCeEEEEecCCcceeeeecCCCCCCCCCCccCCCCcce
Q 021247           88 DVDTN------ASIATLEASPSEVWQMQFDPKGTTLAVAGGGSASVKLWDTATWNLIATLSIPRPEGLKPTDKSSSKKFV  161 (315)
Q Consensus        88 ~~~~~------~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i  161 (315)
                      ++...      .....+..|...|..++|+|++..+ ++++.|++|++||+++++.+..+..             |...|
T Consensus       134 ~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l-~t~s~D~~v~lwd~~~~~~~~~~~~-------------h~~~v  199 (354)
T 2pbi_B          134 PLTFDKNENMAAKKKSVAMHTNYLSACSFTNSDMQI-LTASGDGTCALWDVESGQLLQSFHG-------------HGADV  199 (354)
T ss_dssp             ECCCCTTCCSGGGCEEEEECSSCEEEEEECSSSSEE-EEEETTSEEEEEETTTCCEEEEEEC-------------CSSCE
T ss_pred             EEeccccccccccceeeeccCCcEEEEEEeCCCCEE-EEEeCCCcEEEEeCCCCeEEEEEcC-------------CCCCe
Confidence            98653      2345667789999999999998865 6788999999999999887776642             34458


Q ss_pred             EEEEECC--CCCEEEEecCCCcEEEEEcccceeeeeecCCccceEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCeeEEEe
Q 021247          162 LSVAWSP--DGRRIACGSMDGTISVFDVTRAKFLHHLEGHFMPVRSLVYSPVDPRVLFSASDDTHVHMYDAEGKSLVTAM  239 (315)
Q Consensus       162 ~~~~~~~--~~~~l~~~s~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~  239 (315)
                      .+++|+|  ++++|++|+.|+.|++||+++++.+..+.+|...|.+++|+| ++.+|++++.|++|++||++....+..+
T Consensus       200 ~~~~~~~~~~g~~l~sgs~Dg~v~~wd~~~~~~~~~~~~h~~~v~~v~~~p-~~~~l~s~s~D~~v~lwd~~~~~~~~~~  278 (354)
T 2pbi_B          200 LCLDLAPSETGNTFVSGGCDKKAMVWDMRSGQCVQAFETHESDVNSVRYYP-SGDAFASGSDDATCRLYDLRADREVAIY  278 (354)
T ss_dssp             EEEEECCCSSCCEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECT-TSSEEEEEETTSCEEEEETTTTEEEEEE
T ss_pred             EEEEEEeCCCCCEEEEEeCCCeEEEEECCCCcEEEEecCCCCCeEEEEEeC-CCCEEEEEeCCCeEEEEECCCCcEEEEE
Confidence            8999987  578999999999999999999999999999999999999999 6679999999999999999988776655


Q ss_pred             ecc--cccEEEEEEcCCCCeEEEEeCCCcEEEEecCccceehcccccccceEEEEEeeCCCEEEEEeCCCcEEEee
Q 021247          240 SGH--ASWVLSVDASPDGAAITTGSSDRTVKLWDLNMRAAMQSMTNHTDQVWGVSFRPLGGRVVSVSDDKSISLYE  313 (315)
Q Consensus       240 ~~~--~~~i~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~i~i~~  313 (315)
                      ..+  ...+.+++|+|++++|++|+.|++|++||+..++.+..+.+|...|++++|+|+|++|++++.|++|+||+
T Consensus       279 ~~~~~~~~~~~~~~s~~g~~l~~g~~d~~i~vwd~~~~~~~~~l~~h~~~v~~l~~spdg~~l~sgs~D~~v~vW~  354 (354)
T 2pbi_B          279 SKESIIFGASSVDFSLSGRLLFAGYNDYTINVWDVLKGSRVSILFGHENRVSTLRVSPDGTAFCSGSWDHTLRVWA  354 (354)
T ss_dssp             CCTTCCSCEEEEEECTTSSEEEEEETTSCEEEEETTTCSEEEEECCCSSCEEEEEECTTSSCEEEEETTSEEEEEC
T ss_pred             cCCCcccceeEEEEeCCCCEEEEEECCCcEEEEECCCCceEEEEECCCCcEEEEEECCCCCEEEEEcCCCCEEecC
Confidence            533  35789999999999999999999999999999988888999999999999999999999999999999996

>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}

Probab=100.00  E-value=1.8e-51  Score=352.08  Aligned_cols=295  Identities=22%  Similarity=0.366  Sum_probs=257.0

Q ss_pred             hhhhccccceEEEEEeecCCCCCcEEEEeeCCCcEEEEcCCCCcceeeccccccceEEEEeCCCCCEEEEeeCCCeEEEE
Q 021247            8 SVENAHEESVWAVTWVPATETRPALLLTGSLDETVKLWRPDDMQLERTNTGHCLGVVSVAAHPSGIIAASASLDSFVRVF   87 (315)
Q Consensus         8 ~~~~~h~~~v~~v~~~~~~~~~~~~l~sgs~d~~v~~w~~~~~~~~~~~~~h~~~v~~~~~~~~g~~l~s~~~d~~i~~w   87 (315)
                      ..+.+|+++|++++|+|.++    +|+|||.|++|++||..+.+....+.+|...|.+++|+|+|.++++++.|+.+++|
T Consensus        60 ~~l~gH~~~V~~~~~sp~~~----~l~s~s~D~~v~iWd~~~~~~~~~~~~h~~~v~~~~~s~~g~~las~~~d~~v~iw  135 (380)
T 3iz6_a           60 RTLQGHSGKVYSLDWTPEKN----WIVSASQDGRLIVWNALTSQKTHAIKLHCPWVMECAFAPNGQSVACGGLDSACSIF  135 (380)
T ss_dssp             EEECCCSSCEEEEEECTTSS----CEEEEETTSEEEEEETTTTEEEEEEECCCTTCCCCEECTTSSEEEECCSSSCCEEE
T ss_pred             ecccccccEEEEEEEcCCCC----EEEEEeCCCeEEEEECCCCccceEEecCCCCEEEEEECCCCCEEEEeeCCCcEEEE
Confidence            34679999999999999765    69999999999999999888888889999999999999999999999999999999


Q ss_pred             ECCCCc-------eeEEeeCCcccEEEEEECCCCCeEEEEecCCCeEEEEecCCcceeeeecCCCCCCCCCCccCCCCcc
Q 021247           88 DVDTNA-------SIATLEASPSEVWQMQFDPKGTTLAVAGGGSASVKLWDTATWNLIATLSIPRPEGLKPTDKSSSKKF  160 (315)
Q Consensus        88 ~~~~~~-------~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  160 (315)
                      ++.+..       ....+..|...+..+.|.|++...+++|+.|++|++||+++++.+..+....+        ..|...
T Consensus       136 ~~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~~~~--------~~h~~~  207 (380)
T 3iz6_a          136 NLSSQADRDGNMPVSRVLTGHKGYASSCQYVPDQETRLITGSGDQTCVLWDVTTGQRISIFGSEFP--------SGHTAD  207 (380)
T ss_dssp             ECCCCSSCCCSSTTCCBCCCCSSCCCCCBCCSSSSSCEEEECTTSCEEEECTTTCCEEEEECCCSS--------SSCCSC
T ss_pred             ECCCCccccCCccceeeccCCCcceEEEEEecCCCCEEEEECCCCcEEEEEcCCCcEEEEeecccC--------CCCccC
Confidence            997532       23456778889999999998766678999999999999999887766532211        245667


Q ss_pred             eEEEEECC-CCCEEEEecCCCcEEEEEcc-cceeeeeecCCccceEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCeeEEE
Q 021247          161 VLSVAWSP-DGRRIACGSMDGTISVFDVT-RAKFLHHLEGHFMPVRSLVYSPVDPRVLFSASDDTHVHMYDAEGKSLVTA  238 (315)
Q Consensus       161 i~~~~~~~-~~~~l~~~s~dg~i~i~d~~-~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~  238 (315)
                      +.+++|++ ++++|++|+.|+.|++||++ ..+.+..+.+|...|.+++|+| ++++|++++.|++|++||++++..+..
T Consensus       208 v~~~~~~~~~~~~l~sgs~D~~v~~wd~~~~~~~~~~~~~h~~~v~~v~~~p-~~~~l~s~s~D~~i~lwd~~~~~~~~~  286 (380)
T 3iz6_a          208 VLSLSINSLNANMFISGSCDTTVRLWDLRITSRAVRTYHGHEGDINSVKFFP-DGQRFGTGSDDGTCRLFDMRTGHQLQV  286 (380)
T ss_dssp             EEEEEECSSSCCEEEEEETTSCEEEEETTTTCCCCEEECCCSSCCCEEEECT-TSSEEEEECSSSCEEEEETTTTEEEEE
T ss_pred             eEEEEeecCCCCEEEEEECCCeEEEEECCCCCcceEEECCcCCCeEEEEEec-CCCeEEEEcCCCeEEEEECCCCcEEEE
Confidence            99999987 78899999999999999997 4567788899999999999999 678999999999999999999888776


Q ss_pred             eeccc-------ccEEEEEEcCCCCeEEEEeCCCcEEEEecCccceehcc----cccccceEEEEEeeCCCEEEEEeCCC
Q 021247          239 MSGHA-------SWVLSVDASPDGAAITTGSSDRTVKLWDLNMRAAMQSM----TNHTDQVWGVSFRPLGGRVVSVSDDK  307 (315)
Q Consensus       239 ~~~~~-------~~i~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~----~~~~~~v~~~~~s~~~~~l~s~~~d~  307 (315)
                      +..+.       ..+.+++|+|++++|++|+.||.|++||+..++....+    .+|.+.|++++|+|+|.+|++++.|+
T Consensus       287 ~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~D~  366 (380)
T 3iz6_a          287 YNREPDRNDNELPIVTSVAFSISGRLLFAGYSNGDCYVWDTLLAEMVLNLGTLQNSHEGRISCLGLSSDGSALCTGSWDK  366 (380)
T ss_dssp             ECCCCSSSCCSSCSCSEEEECSSSSEEEEECTTSCEEEEETTTCCEEEEECCSCSSCCCCCCEEEECSSSSEEEEECTTS
T ss_pred             ecccccccccccCceEEEEECCCCCEEEEEECCCCEEEEECCCCceEEEEecccCCCCCceEEEEECCCCCEEEEeeCCC
Confidence            65432       34889999999999999999999999999887766554    67999999999999999999999999


Q ss_pred             cEEEeecC
Q 021247          308 SISLYEYS  315 (315)
Q Consensus       308 ~i~i~~~~  315 (315)
                      +|+||+++
T Consensus       367 ~i~iW~~~  374 (380)
T 3iz6_a          367 NLKIWAFS  374 (380)
T ss_dssp             CEEEEECC
T ss_pred             CEEEEecC
Confidence            99999974

>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*

Probab=100.00  E-value=7.4e-49  Score=328.09  Aligned_cols=290  Identities=20%  Similarity=0.319  Sum_probs=249.3

Q ss_pred             cchhhhhhccccceEEEEEeecCCCCCcEEEEeeCCCcEEEEcCCCC-----cceeeccccccceEEEEeCCCCCEEEEe
Q 021247            4 AGLKSVENAHEESVWAVTWVPATETRPALLLTGSLDETVKLWRPDDM-----QLERTNTGHCLGVVSVAAHPSGIIAASA   78 (315)
Q Consensus         4 ~~~~~~~~~h~~~v~~v~~~~~~~~~~~~l~sgs~d~~v~~w~~~~~-----~~~~~~~~h~~~v~~~~~~~~g~~l~s~   78 (315)
                      ..+...+.+|++.|++++|+|...   .+|+|||.|++|++|+....     ...+.+.+|...|.+++|+|+|.+++++
T Consensus         7 ~~l~~~l~gH~~~V~~l~~~~~~~---~~l~s~s~D~~v~~W~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~   83 (319)
T 3frx_A            7 LVLRGTLEGHNGWVTSLATSAGQP---NLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTADGAYALSA   83 (319)
T ss_dssp             EEEEEEECCCSSCEEEEEECSSCT---TEEEEEETTSEEEEEEEEEETTEEEEEEEEEECCSSCEEEEEECTTSSEEEEE
T ss_pred             EEEEEEEccccceEEEEEccCCCc---cEEEEecCCccEEEecCCCCCccccccceEEeCCcccEEEEEECCCCCEEEEE
Confidence            445566789999999999998653   38999999999999987532     2345678999999999999999999999


Q ss_pred             eCCCeEEEEECCCCceeEEeeCCcccEEEEEECCCCCeEEEEecCCCeEEEEecCCcceeeeecCCCCCCCCCCccCCCC
Q 021247           79 SLDSFVRVFDVDTNASIATLEASPSEVWQMQFDPKGTTLAVAGGGSASVKLWDTATWNLIATLSIPRPEGLKPTDKSSSK  158 (315)
Q Consensus        79 ~~d~~i~~w~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~  158 (315)
                      +.|++|++||+.+++.+..+..|...|.+++|+|++.. +++++.|++|++||++. +.+..+             ..|.
T Consensus        84 s~D~~v~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~-l~s~s~D~~i~vwd~~~-~~~~~~-------------~~h~  148 (319)
T 3frx_A           84 SWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASM-IISGSRDKTIKVWTIKG-QCLATL-------------LGHN  148 (319)
T ss_dssp             ETTSEEEEEETTTTEEEEEEECCSSCEEEEEECTTSCE-EEEEETTSCEEEEETTS-CEEEEE-------------CCCS
T ss_pred             eCCCEEEEEECCCCCeeEEEccCCCcEEEEEEcCCCCE-EEEEeCCCeEEEEECCC-CeEEEE-------------eccC
Confidence            99999999999999999999999999999999999875 57889999999999964 333333             2345


Q ss_pred             cceEEEEECCC------CCEEEEecCCCcEEEEEcccceeeeeecCCccceEEEEEcCCCCcEEEEEeCCCeEEEEeCCC
Q 021247          159 KFVLSVAWSPD------GRRIACGSMDGTISVFDVTRAKFLHHLEGHFMPVRSLVYSPVDPRVLFSASDDTHVHMYDAEG  232 (315)
Q Consensus       159 ~~i~~~~~~~~------~~~l~~~s~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~  232 (315)
                      ..+.+++|.|.      +..|++++.|+.|++||+++.+....+.+|..+|.+++|+| ++++|++++.|+.|++||++.
T Consensus       149 ~~v~~~~~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~sp-~g~~l~s~~~dg~i~iwd~~~  227 (319)
T 3frx_A          149 DWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASP-DGTLIASAGKDGEIMLWNLAA  227 (319)
T ss_dssp             SCEEEEEECCC------CCEEEEEETTSCEEEEETTTTEEEEEECCCCSCEEEEEECT-TSSEEEEEETTCEEEEEETTT
T ss_pred             CcEEEEEEccCCCCCCCccEEEEEeCCCEEEEEECCcchhheeecCCCCcEEEEEEcC-CCCEEEEEeCCCeEEEEECCC
Confidence            56899999985      44899999999999999999999899999999999999999 678999999999999999999


Q ss_pred             CeeEEEeecccccEEEEEEcCCCCeEEEEeCCCcEEEEecCccceehcc--------cccccceEEEEEeeCCCEEEEEe
Q 021247          233 KSLVTAMSGHASWVLSVDASPDGAAITTGSSDRTVKLWDLNMRAAMQSM--------TNHTDQVWGVSFRPLGGRVVSVS  304 (315)
Q Consensus       233 ~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~--------~~~~~~v~~~~~s~~~~~l~s~~  304 (315)
                      ++.+..+..+ ..|.+++|+|++.+|++++.+ .+++|+++....+..+        ..|...+.+++|+|+|++|++++
T Consensus       228 ~~~~~~~~~~-~~v~~~~~sp~~~~la~~~~~-~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~sg~  305 (319)
T 3frx_A          228 KKAMYTLSAQ-DEVFSLAFSPNRYWLAAATAT-GIKVFSLDPQYLVDDLRPEFAGYSKAAEPHAVSLAWSADGQTLFAGY  305 (319)
T ss_dssp             TEEEEEEECC-SCEEEEEECSSSSEEEEEETT-EEEEEEETTEEEEEEECCCCTTCCGGGCCCEEEEEECTTSSEEEEEE
T ss_pred             CcEEEEecCC-CcEEEEEEcCCCCEEEEEcCC-CcEEEEeCcCeeeeccCccccccccCcCcceeEEEECCCCCEEEEee
Confidence            9888877754 679999999999999888755 5999999876554433        23566799999999999999999


Q ss_pred             CCCcEEEeec
Q 021247          305 DDKSISLYEY  314 (315)
Q Consensus       305 ~d~~i~i~~~  314 (315)
                      .|++|+|||+
T Consensus       306 ~Dg~i~vWd~  315 (319)
T 3frx_A          306 TDNVIRVWQV  315 (319)
T ss_dssp             TTSCEEEEEE
T ss_pred             cCceEEEEEE
Confidence            9999999996

>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}

Probab=100.00  E-value=9.9e-49  Score=330.05  Aligned_cols=284  Identities=19%  Similarity=0.216  Sum_probs=235.4

Q ss_pred             hccccceEEEEEeecCCCCCcEEEEeeCCCcEEEEcCCCC-----------cceeeccccccceEEEEeCCCCCEEEEee
Q 021247           11 NAHEESVWAVTWVPATETRPALLLTGSLDETVKLWRPDDM-----------QLERTNTGHCLGVVSVAAHPSGIIAASAS   79 (315)
Q Consensus        11 ~~h~~~v~~v~~~~~~~~~~~~l~sgs~d~~v~~w~~~~~-----------~~~~~~~~h~~~v~~~~~~~~g~~l~s~~   79 (315)
                      ..|...|.+++|+|++.    +|++++ |+++++|+....           ........|..+|.+++|+|++ .+++++
T Consensus        27 ~~~~~~v~~~~fs~dG~----~l~~~s-d~~~r~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~-~l~~~s  100 (344)
T 4gqb_B           27 ACMERQLEAARYRSDGA----LLLGAS-SLSGRCWAGSLWLFKDPCAAPNEGFCSAGVQTEAGVADLTWVGER-GILVAS  100 (344)
T ss_dssp             SSCCSEEEEEEECTTSC----EEEEEE-CCSSSCCCEEEEEESSGGGTTCGGGCSEEEEESSCEEEEEEETTT-EEEEEE
T ss_pred             ccccCCEEEEEECCCCC----EEEEEe-CCceEEeeceeeeeccccccCCcceeeeeeccCCCEEEEEEeCCC-eEEEEE
Confidence            36788899999999885    566666 778888863210           0111122356789999999986 677899


Q ss_pred             CCCeEEEEECCCCceeEE----eeCCcccEEEEEECCCCCeEEEEecCCCeEEEEecCCcceeeeecCCCCCCCCCCccC
Q 021247           80 LDSFVRVFDVDTNASIAT----LEASPSEVWQMQFDPKGTTLAVAGGGSASVKLWDTATWNLIATLSIPRPEGLKPTDKS  155 (315)
Q Consensus        80 ~d~~i~~w~~~~~~~~~~----~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~  155 (315)
                      .||+|++||+.+++.+..    ...|.+.|.+++|+|+++.+ ++|+.|++|++||+++++.+..+.             
T Consensus       101 ~dg~v~lWd~~~~~~~~~~~~~~~~H~~~V~~v~~spdg~~l-~sgs~d~~i~iwd~~~~~~~~~~~-------------  166 (344)
T 4gqb_B          101 DSGAVELWELDENETLIVSKFCKYEHDDIVSTVSVLSSGTQA-VSGSKDICIKVWDLAQQVVLSSYR-------------  166 (344)
T ss_dssp             TTSEEEEEEECTTSSCEEEEEEEECCSSCEEEEEECTTSSEE-EEEETTSCEEEEETTTTEEEEEEC-------------
T ss_pred             CCCEEEEEeccCCCceeEeeccccCCCCCEEEEEECCCCCEE-EEEeCCCeEEEEECCCCcEEEEEc-------------
Confidence            999999999998875543    34788999999999998865 688999999999999988877663             


Q ss_pred             CCCcceEEEEECCCCC-EEEEecCCCcEEEEEcccceeeeeec--CCccceEEEEEcCCCCcEEEEEeCCCeEEEEeCCC
Q 021247          156 SSKKFVLSVAWSPDGR-RIACGSMDGTISVFDVTRAKFLHHLE--GHFMPVRSLVYSPVDPRVLFSASDDTHVHMYDAEG  232 (315)
Q Consensus       156 ~~~~~i~~~~~~~~~~-~l~~~s~dg~i~i~d~~~~~~~~~~~--~~~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~  232 (315)
                      .|...|.+++|+|++. +|++++.|+.|++||+++++....+.  .+...+.+++|+|.+++++++|+.|+.|++||+++
T Consensus       167 ~h~~~V~~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~sg~~dg~v~~wd~~~  246 (344)
T 4gqb_B          167 AHAAQVTCVAASPHKDSVFLSCSEDNRILLWDTRCPKPASQIGCSAPGYLPTSLAWHPQQSEVFVFGDENGTVSLVDTKS  246 (344)
T ss_dssp             CCSSCEEEEEECSSCTTEEEEEETTSCEEEEETTSSSCEEECC----CCCEEEEEECSSCTTEEEEEETTSEEEEEESCC
T ss_pred             CcCCceEEEEecCCCCCceeeeccccccccccccccceeeeeecceeeccceeeeecCCCCcceEEeccCCcEEEEECCC
Confidence            3556699999999875 78899999999999999988877664  45567899999998889999999999999999999


Q ss_pred             CeeEEEeecccccEEEEEEcCCC-CeEEEEeCCCcEEEEecCccceehcccccccceEEEEEeeCCCE-EEEEeCCCcEE
Q 021247          233 KSLVTAMSGHASWVLSVDASPDG-AAITTGSSDRTVKLWDLNMRAAMQSMTNHTDQVWGVSFRPLGGR-VVSVSDDKSIS  310 (315)
Q Consensus       233 ~~~~~~~~~~~~~i~~~~~~~~~-~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~-l~s~~~d~~i~  310 (315)
                      ++.+..+.+|...|++++|+|++ ++|++|+.|++|++||+++++.+ .+.+|.+.|++++|+|+++. |+++|.|++|+
T Consensus       247 ~~~~~~~~~h~~~v~~v~fsp~g~~~lasgs~D~~i~vwd~~~~~~~-~~~~H~~~V~~v~~sp~~~~llas~s~D~~v~  325 (344)
T 4gqb_B          247 TSCVLSSAVHSQCVTGLVFSPHSVPFLASLSEDCSLAVLDSSLSELF-RSQAHRDFVRDATWSPLNHSLLTTVGWDHQVV  325 (344)
T ss_dssp             --CCEEEECCSSCEEEEEECSSSSCCEEEEETTSCEEEECTTCCEEE-EECCCSSCEEEEEECSSSTTEEEEEETTSCEE
T ss_pred             CcEEEEEcCCCCCEEEEEEccCCCeEEEEEeCCCeEEEEECCCCcEE-EEcCCCCCEEEEEEeCCCCeEEEEEcCCCeEE
Confidence            99999999999999999999997 57999999999999999988765 46789999999999999875 67999999999


Q ss_pred             EeecC
Q 021247          311 LYEYS  315 (315)
Q Consensus       311 i~~~~  315 (315)
                      +|++.
T Consensus       326 ~w~v~  330 (344)
T 4gqb_B          326 HHVVP  330 (344)
T ss_dssp             EEECC
T ss_pred             EEECC
Confidence            99873

>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}

Probab=100.00  E-value=1.7e-48  Score=329.35  Aligned_cols=291  Identities=25%  Similarity=0.403  Sum_probs=241.4

Q ss_pred             hhhcccc-ceEEEEEeecCCCCCcEEEEeeCCCcEEEEcCCCCcce---eeccccccceEEEEeCCCCCEEEEeeCCCeE
Q 021247            9 VENAHEE-SVWAVTWVPATETRPALLLTGSLDETVKLWRPDDMQLE---RTNTGHCLGVVSVAAHPSGIIAASASLDSFV   84 (315)
Q Consensus         9 ~~~~h~~-~v~~v~~~~~~~~~~~~l~sgs~d~~v~~w~~~~~~~~---~~~~~h~~~v~~~~~~~~g~~l~s~~~d~~i   84 (315)
                      .+.+|.+ .|++++|+|++.    +|++|+.|++|++|+..+....   ....+|...|.+++|+|+|.+|++++.|+++
T Consensus        10 ~~~~h~~~~v~~l~~sp~g~----~las~~~D~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~s~D~~v   85 (345)
T 3fm0_A           10 RVPAHPDSRCWFLAWNPAGT----LLASCGGDRRIRIWGTEGDSWICKSVLSEGHQRTVRKVAWSPCGNYLASASFDATT   85 (345)
T ss_dssp             EECCSTTSCEEEEEECTTSS----CEEEEETTSCEEEEEEETTEEEEEEEECSSCSSCEEEEEECTTSSEEEEEETTSCE
T ss_pred             eecCCCCCcEEEEEECCCCC----EEEEEcCCCeEEEEEcCCCcceeeeeeccccCCcEEEEEECCCCCEEEEEECCCcE
Confidence            4568988 999999999875    6999999999999998765432   2236899999999999999999999999999


Q ss_pred             EEEECCCCc--eeEEeeCCcccEEEEEECCCCCeEEEEecCCCeEEEEecCCcceeeeecCCCCCCCCCCccCCCCcceE
Q 021247           85 RVFDVDTNA--SIATLEASPSEVWQMQFDPKGTTLAVAGGGSASVKLWDTATWNLIATLSIPRPEGLKPTDKSSSKKFVL  162 (315)
Q Consensus        85 ~~w~~~~~~--~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~  162 (315)
                      ++|++..+.  ++..+..|..+|.+++|+|+++. +++++.|++|++||++..+.......          ...|...|.
T Consensus        86 ~iw~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~-l~s~s~D~~v~iwd~~~~~~~~~~~~----------~~~h~~~v~  154 (345)
T 3fm0_A           86 CIWKKNQDDFECVTTLEGHENEVKSVAWAPSGNL-LATCSRDKSVWVWEVDEEDEYECVSV----------LNSHTQDVK  154 (345)
T ss_dssp             EEEEECCC-EEEEEEECCCSSCEEEEEECTTSSE-EEEEETTSCEEEEEECTTSCEEEEEE----------ECCCCSCEE
T ss_pred             EEEEccCCCeEEEEEccCCCCCceEEEEeCCCCE-EEEEECCCeEEEEECCCCCCeEEEEE----------ecCcCCCeE
Confidence            999998764  56788899999999999999885 46888999999999976543221110          123455699


Q ss_pred             EEEECCCCCEEEEecCCCcEEEEEcccce--eeeeecCCccceEEEEEcCCCCcEEEEEeCCCeEEEEeCCCC-------
Q 021247          163 SVAWSPDGRRIACGSMDGTISVFDVTRAK--FLHHLEGHFMPVRSLVYSPVDPRVLFSASDDTHVHMYDAEGK-------  233 (315)
Q Consensus       163 ~~~~~~~~~~l~~~s~dg~i~i~d~~~~~--~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~-------  233 (315)
                      +++|+|++++|++++.|+.|++||+++++  ....+.+|...|.+++|+| ++++|++++.|++|++||....       
T Consensus       155 ~~~~~p~~~~l~s~s~d~~i~~w~~~~~~~~~~~~~~~h~~~v~~l~~sp-~g~~l~s~s~D~~v~iW~~~~~~~~~~~~  233 (345)
T 3fm0_A          155 HVVWHPSQELLASASYDDTVKLYREEEDDWVCCATLEGHESTVWSLAFDP-SGQRLASCSDDRTVRIWRQYLPGNEQGVA  233 (345)
T ss_dssp             EEEECSSSSCEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECT-TSSEEEEEETTSCEEEEEEECTTCTTCCC
T ss_pred             EEEECCCCCEEEEEeCCCcEEEEEecCCCEEEEEEecCCCCceEEEEECC-CCCEEEEEeCCCeEEEeccccCCCCccce
Confidence            99999999999999999999999998775  3467889999999999999 6789999999999999995211       


Q ss_pred             --------eeEEEeec-ccccEEEEEEcCCCCeEEEEeCCCcEEEEecCccce---------ehcccccccceEEEEEee
Q 021247          234 --------SLVTAMSG-HASWVLSVDASPDGAAITTGSSDRTVKLWDLNMRAA---------MQSMTNHTDQVWGVSFRP  295 (315)
Q Consensus       234 --------~~~~~~~~-~~~~i~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~---------~~~~~~~~~~v~~~~~s~  295 (315)
                              ..+..+.+ |...|.+++|+|++..|++++.|+.|++|+.+....         .+...+|.+.|++++|+|
T Consensus       234 ~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p  313 (345)
T 3fm0_A          234 CSGSDPSWKCICTLSGFHSRTIYDIAWCQLTGALATACGDDAIRVFQEDPNSDPQQPTFSLTAHLHQAHSQDVNCVAWNP  313 (345)
T ss_dssp             CC---CEEEEEEEECSSCSSCEEEEEECTTTCCEEEEETTSCEEEEEECTTSCTTSCCEEEEEEETTSSSSCEEEEEECS
T ss_pred             eeccCCccceeEEecCCCCCcEEEEEEecCCCEEEEEeCCCeEEEEEeCCCCCcceeeEEEEeeecccccCcEeEeEEeC
Confidence                    22334444 888999999999999999999999999999875421         122357899999999999


Q ss_pred             CC-CEEEEEeCCCcEEEeecC
Q 021247          296 LG-GRVVSVSDDKSISLYEYS  315 (315)
Q Consensus       296 ~~-~~l~s~~~d~~i~i~~~~  315 (315)
                      ++ .+|++++.||+|+||+..
T Consensus       314 ~~~~~laS~s~Dg~v~~W~~~  334 (345)
T 3fm0_A          314 KEPGLLASCSDDGEVAFWKYQ  334 (345)
T ss_dssp             SSTTEEEEEETTSCEEEEEEC
T ss_pred             CCceEEEEcCCCCcEEEEEec
Confidence            98 489999999999999963

>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...

Probab=100.00  E-value=1e-47  Score=320.20  Aligned_cols=290  Identities=27%  Similarity=0.451  Sum_probs=256.7

Q ss_pred             hhhhhccccceEEEEEeecCCCCCcEEEEeeCCCcEEEEcCCCCcceeeccccccceEEEEeCCCCCEEEEeeCCCeEEE
Q 021247            7 KSVENAHEESVWAVTWVPATETRPALLLTGSLDETVKLWRPDDMQLERTNTGHCLGVVSVAAHPSGIIAASASLDSFVRV   86 (315)
Q Consensus         7 ~~~~~~h~~~v~~v~~~~~~~~~~~~l~sgs~d~~v~~w~~~~~~~~~~~~~h~~~v~~~~~~~~g~~l~s~~~d~~i~~   86 (315)
                      ...+.+|.+.|++++|+|.++    +|++|+.||.|++|+..+.+....+.+|..+|.+++|+|++.+|++++.|+.|++
T Consensus        16 ~~~~~gh~~~v~~~~~s~~~~----~l~s~~~dg~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~v   91 (312)
T 4ery_A           16 KFTLAGHTKAVSSVKFSPNGE----WLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKI   91 (312)
T ss_dssp             EEEECCCSSCEEEEEECTTSS----EEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEE
T ss_pred             EEEEcccCCcEEEEEECCCCC----EEEEeeCCCeEEEEeCCCcccchhhccCCCceEEEEEcCCCCEEEEECCCCEEEE
Confidence            334579999999999999765    7999999999999999888888888999999999999999999999999999999


Q ss_pred             EECCCCceeEEeeCCcccEEEEEECCCCCeEEEEecCCCeEEEEecCCcceeeeecCCCCCCCCCCccCCCCcceEEEEE
Q 021247           87 FDVDTNASIATLEASPSEVWQMQFDPKGTTLAVAGGGSASVKLWDTATWNLIATLSIPRPEGLKPTDKSSSKKFVLSVAW  166 (315)
Q Consensus        87 w~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~  166 (315)
                      ||+.+++.+..+..|...|.+++|+|+++.+ ++++.|++|++||+++++.+..+..             +...|.+++|
T Consensus        92 wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l-~s~~~d~~i~iwd~~~~~~~~~~~~-------------~~~~v~~~~~  157 (312)
T 4ery_A           92 WDVSSGKCLKTLKGHSNYVFCCNFNPQSNLI-VSGSFDESVRIWDVKTGKCLKTLPA-------------HSDPVSAVHF  157 (312)
T ss_dssp             EETTTCCEEEEEECCSSCEEEEEECSSSSEE-EEEETTSCEEEEETTTCCEEEEECC-------------CSSCEEEEEE
T ss_pred             EECCCCcEEEEEcCCCCCEEEEEEcCCCCEE-EEEeCCCcEEEEECCCCEEEEEecC-------------CCCcEEEEEE
Confidence            9999999999999999999999999998854 6788999999999998877765532             3445999999


Q ss_pred             CCCCCEEEEecCCCcEEEEEcccceeeeeec-CCccceEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCeeEEEeeccccc
Q 021247          167 SPDGRRIACGSMDGTISVFDVTRAKFLHHLE-GHFMPVRSLVYSPVDPRVLFSASDDTHVHMYDAEGKSLVTAMSGHASW  245 (315)
Q Consensus       167 ~~~~~~l~~~s~dg~i~i~d~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~  245 (315)
                      +|++++|++++.|+.|++||+++++.+..+. .+..++..++|+| +++++++++.|+.|++||++.++.+..+.+|...
T Consensus       158 ~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~  236 (312)
T 4ery_A          158 NRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSP-NGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNE  236 (312)
T ss_dssp             CTTSSEEEEEETTSCEEEEETTTCCEEEEECCSSCCCEEEEEECT-TSSEEEEEETTTEEEEEETTTTEEEEEECSSCCS
T ss_pred             cCCCCEEEEEeCCCcEEEEECCCCceeeEEeccCCCceEEEEECC-CCCEEEEEcCCCeEEEEECCCCcEEEEEEecCCc
Confidence            9999999999999999999999888776654 4667899999998 6789999999999999999999988888887654


Q ss_pred             EE--EEEE-cCCCCeEEEEeCCCcEEEEecCccceehcccccccceEEEEEeeCCCEEEEEe--CCCcEEEeecC
Q 021247          246 VL--SVDA-SPDGAAITTGSSDRTVKLWDLNMRAAMQSMTNHTDQVWGVSFRPLGGRVVSVS--DDKSISLYEYS  315 (315)
Q Consensus       246 i~--~~~~-~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~--~d~~i~i~~~~  315 (315)
                      +.  ...+ .+++.+|++|+.||.|++||+..++.+..+.+|.+.|.+++|+|+++.|++++  .|++|++|+.+
T Consensus       237 ~~~~~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~~~~~d~~i~~W~~d  311 (312)
T 4ery_A          237 KYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLWKSD  311 (312)
T ss_dssp             SSCCCEEEECSSSCEEEECCTTSCEEEEETTTCCEEEEECCCSSCEEEEEECSSSSEEEEEECTTTCCEEEEECC
T ss_pred             eEEEEEEEEeCCCcEEEEECCCCEEEEEECCCchhhhhhhccCCcEEEEeecCcCCceEEEEccCCccEEEecCC
Confidence            32  2233 46788999999999999999999999999999999999999999999999987  69999999864

>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}

Probab=100.00  E-value=2.6e-48  Score=326.34  Aligned_cols=294  Identities=22%  Similarity=0.271  Sum_probs=233.7

Q ss_pred             CcccchhhhhhccccceEEEEEeecCCCCCcEEEEeeCCCcEEEEcCCCC--cceeec-cc-cccceEEEEeCCCCCEEE
Q 021247            1 MKFAGLKSVENAHEESVWAVTWVPATETRPALLLTGSLDETVKLWRPDDM--QLERTN-TG-HCLGVVSVAAHPSGIIAA   76 (315)
Q Consensus         1 ~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~~~l~sgs~d~~v~~w~~~~~--~~~~~~-~~-h~~~v~~~~~~~~g~~l~   76 (315)
                      |....+...+.+|+++|++++|+|.      +|++|+.|++|++|+....  +....+ .+ |..+|.+++|+|++.+|+
T Consensus         1 ~~~~~~~~~~~~h~~~v~~~~~s~~------~las~~~D~~i~lw~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~la   74 (330)
T 2hes_X            1 MASINLIKSLKLYKEKIWSFDFSQG------ILATGSTDRKIKLVSVKYDDFTLIDVLDETAHKKAIRSVAWRPHTSLLA   74 (330)
T ss_dssp             --CCEEEEEEECCSSCEEEEEEETT------EEEEEESSSCEEEEECSSSCCEEEEEECTTCCCSCEEEEEECTTSSEEE
T ss_pred             CcccccceeeccCCCceeeeccCCC------EEEEEcCCCEEEEEEecCCCeEEEEEEecCCccCCEEEEEECCCCCEEE
Confidence            4455566677899999999999873      7999999999999998764  333334 34 999999999999999999


Q ss_pred             EeeCCCeEEEEECCC-------CceeEEeeCCcccEEEEEECCCCCeEEEEecCCCeEEEEecCCc----ceeeeecCCC
Q 021247           77 SASLDSFVRVFDVDT-------NASIATLEASPSEVWQMQFDPKGTTLAVAGGGSASVKLWDTATW----NLIATLSIPR  145 (315)
Q Consensus        77 s~~~d~~i~~w~~~~-------~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~~d~~~~----~~~~~~~~~~  145 (315)
                      +++.|++|++||+..       ...+..+..|...|.+++|+|+++++ ++++.|++|++||++..    +.+..+    
T Consensus        75 s~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp~g~~l-as~s~D~~v~iwd~~~~~~~~~~~~~~----  149 (330)
T 2hes_X           75 AGSFDSTVSIWAKEESADRTFEMDLLAIIEGHENEVKGVAWSNDGYYL-ATCSRDKSVWIWETDESGEEYECISVL----  149 (330)
T ss_dssp             EEETTSCEEEEEC-------CCCEEEEEEC----CEEEEEECTTSCEE-EEEETTSCEEEEECCTTCCCCEEEEEE----
T ss_pred             EEeCCCcEEEEEcccCcCccccceeEEEEcCCCCcEEEEEECCCCCEE-EEEeCCCEEEEEeccCCCCCeEEEEEe----
Confidence            999999999999853       24566788899999999999998854 68889999999999532    222222    


Q ss_pred             CCCCCCCccCCCCcceEEEEECCCCCEEEEecCCCcEEEEEcccc--eeeeeecCCccceEEEEEcCCC-CcEEEEEeCC
Q 021247          146 PEGLKPTDKSSSKKFVLSVAWSPDGRRIACGSMDGTISVFDVTRA--KFLHHLEGHFMPVRSLVYSPVD-PRVLFSASDD  222 (315)
Q Consensus       146 ~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~s~dg~i~i~d~~~~--~~~~~~~~~~~~v~~~~~~~~~-~~~l~s~~~d  222 (315)
                               ..|...|.+++|+|++++|++++.|+.|++||+.++  +.+..+.+|...|.+++|+|.+ +.+|++++.|
T Consensus       150 ---------~~h~~~v~~v~~~p~~~~l~s~s~D~~i~iW~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~D  220 (330)
T 2hes_X          150 ---------QEHSQDVKHVIWHPSEALLASSSYDDTVRIWKDYDDDWECVAVLNGHEGTVWSSDFDKTEGVFRLCSGSDD  220 (330)
T ss_dssp             ---------CCCSSCEEEEEECSSSSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCSSSSCEEEEEETT
T ss_pred             ---------ccCCCceEEEEECCCCCEEEEEcCCCeEEEEECCCCCeeEEEEccCCCCcEEEEEecCCCCeeEEEEEeCC
Confidence                     235566999999999999999999999999998766  5677889999999999999953 5689999999


Q ss_pred             CeEEEEeCCCC--------eeEEEeec-ccccEEEEEEcCCCCeEEEEeCCCcEEEEecCccc--ee-hccccccc-ceE
Q 021247          223 THVHMYDAEGK--------SLVTAMSG-HASWVLSVDASPDGAAITTGSSDRTVKLWDLNMRA--AM-QSMTNHTD-QVW  289 (315)
Q Consensus       223 ~~i~~wd~~~~--------~~~~~~~~-~~~~i~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~--~~-~~~~~~~~-~v~  289 (315)
                      ++|++||++..        .....+.+ |...|.+++|++++ +|++++.||.|++|+...++  .. ....+|.. .|+
T Consensus       221 ~~v~iw~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~~-~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~h~~~~v~  299 (330)
T 2hes_X          221 STVRVWKYMGDDEDDQQEWVCEAILPDVHKRQVYNVAWGFNG-LIASVGADGVLAVYEEVDGEWKVFAKRALCHGVYEIN  299 (330)
T ss_dssp             SCEEEEEEEEECTTSCEEEEEEEECCSCCSSCEEEEEECTTS-CEEEEETTSCEEEEEEETTEEEEEEEESCTTTTSCEE
T ss_pred             CeEEEEEecCCCccccceeEEeeecccccccceEEEEEcCCC-EEEEEeCCCEEEEEEcCCCceEEEeccccccccceEE
Confidence            99999998643        23344444 89999999999765 79999999999999987653  23 22356776 899


Q ss_pred             EEEEee--CCCEEEEEeCCCcEEEeecC
Q 021247          290 GVSFRP--LGGRVVSVSDDKSISLYEYS  315 (315)
Q Consensus       290 ~~~~s~--~~~~l~s~~~d~~i~i~~~~  315 (315)
                      +++|+|  ++++|++++.||+|+||++.
T Consensus       300 ~v~~~~~~~~~~las~s~Dg~v~~W~~~  327 (330)
T 2hes_X          300 VVKWLELNGKTILATGGDDGIVNFWSLE  327 (330)
T ss_dssp             EEEEC-----CCEEEEETTSEEEEEEC-
T ss_pred             EEEEecCCCceEEEEecCCCcEEEEEec
Confidence            999999  68899999999999999963

>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1

Probab=100.00  E-value=6.2e-48  Score=331.61  Aligned_cols=282  Identities=28%  Similarity=0.468  Sum_probs=246.4

Q ss_pred             ccccceEEEEEeecCCCCCcEEEEeeCCCcEEEEcCCCCcceeeccccc------------------cceEEEEeCCCCC
Q 021247           12 AHEESVWAVTWVPATETRPALLLTGSLDETVKLWRPDDMQLERTNTGHC------------------LGVVSVAAHPSGI   73 (315)
Q Consensus        12 ~h~~~v~~v~~~~~~~~~~~~l~sgs~d~~v~~w~~~~~~~~~~~~~h~------------------~~v~~~~~~~~g~   73 (315)
                      .|...|++++|+|+++    +|++|+ |+.+++|+..+++....+..|.                  ..|.+++|+|+|.
T Consensus        62 ~h~~~V~~v~fspdg~----~la~g~-~~~v~i~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~  136 (393)
T 1erj_A           62 DHTSVVCCVKFSNDGE----YLATGC-NKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGK  136 (393)
T ss_dssp             ECSSCCCEEEECTTSS----EEEEEC-BSCEEEEETTTCCEEEEECC-----------------CCCCBEEEEEECTTSS
T ss_pred             CCCCEEEEEEECCCCC----EEEEEc-CCcEEEEEecCCCEEEEecCccccccccccccccccCCCceeEEEEEECCCCC
Confidence            6999999999999875    688766 7899999998877766554443                  2489999999999


Q ss_pred             EEEEeeCCCeEEEEECCCCceeEEeeCCcccEEEEEECCCCCeEEEEecCCCeEEEEecCCcceeeeecCCCCCCCCCCc
Q 021247           74 IAASASLDSFVRVFDVDTNASIATLEASPSEVWQMQFDPKGTTLAVAGGGSASVKLWDTATWNLIATLSIPRPEGLKPTD  153 (315)
Q Consensus        74 ~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~  153 (315)
                      +|++++.|++|++||+.+++.+..+..|...|.+++|+|++..+ ++++.|++|++||+++++....+..          
T Consensus       137 ~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l-~s~s~d~~v~iwd~~~~~~~~~~~~----------  205 (393)
T 1erj_A          137 FLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKL-VSGSGDRTVRIWDLRTGQCSLTLSI----------  205 (393)
T ss_dssp             EEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEE-EEEETTSEEEEEETTTTEEEEEEEC----------
T ss_pred             EEEEEcCCCeEEEEECCCCcEEEEEccCCCCEEEEEEcCCCCEE-EEecCCCcEEEEECCCCeeEEEEEc----------
Confidence            99999999999999999999999999999999999999998865 6788999999999998877665532          


Q ss_pred             cCCCCcceEEEEECC-CCCEEEEecCCCcEEEEEcccceeeeee-------cCCccceEEEEEcCCCCcEEEEEeCCCeE
Q 021247          154 KSSSKKFVLSVAWSP-DGRRIACGSMDGTISVFDVTRAKFLHHL-------EGHFMPVRSLVYSPVDPRVLFSASDDTHV  225 (315)
Q Consensus       154 ~~~~~~~i~~~~~~~-~~~~l~~~s~dg~i~i~d~~~~~~~~~~-------~~~~~~v~~~~~~~~~~~~l~s~~~d~~i  225 (315)
                          ...+.+++|+| ++++|++|+.|+.|++||+++++.+..+       .+|...|.+++|+| ++++|++++.|+.|
T Consensus       206 ----~~~v~~~~~~~~~~~~l~~~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~-~g~~l~s~s~d~~v  280 (393)
T 1erj_A          206 ----EDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTR-DGQSVVSGSLDRSV  280 (393)
T ss_dssp             ----SSCEEEEEECSTTCCEEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECT-TSSEEEEEETTSEE
T ss_pred             ----CCCcEEEEEECCCCCEEEEEcCCCcEEEEECCCCcEEEeecccccCCCCCCCCEEEEEECC-CCCEEEEEeCCCEE
Confidence                22388999999 8999999999999999999988877665       57899999999998 67899999999999


Q ss_pred             EEEeCCCC------------eeEEEeecccccEEEEEEcCCCCeEEEEeCCCcEEEEecCccceehcccccccceEEEEE
Q 021247          226 HMYDAEGK------------SLVTAMSGHASWVLSVDASPDGAAITTGSSDRTVKLWDLNMRAAMQSMTNHTDQVWGVSF  293 (315)
Q Consensus       226 ~~wd~~~~------------~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~  293 (315)
                      ++||++..            .....+.+|...|.+++++|++++|++|+.|+.|++||+.+++.+..+.+|...|.+++|
T Consensus       281 ~~wd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sgs~D~~v~iwd~~~~~~~~~l~~h~~~v~~v~~  360 (393)
T 1erj_A          281 KLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQGHRNSVISVAV  360 (393)
T ss_dssp             EEEEC---------------CEEEEEECCSSCEEEEEECGGGCEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEE
T ss_pred             EEEECCCCCCcccccCCCCCcceEEEecccCcEEEEEECCCCCEEEEEeCCCeEEEEECCCCeEEEEECCCCCCEEEEEe
Confidence            99998753            234567789999999999999999999999999999999999999999999999999999


Q ss_pred             ee------CCCEEEEEeCCCcEEEeec
Q 021247          294 RP------LGGRVVSVSDDKSISLYEY  314 (315)
Q Consensus       294 s~------~~~~l~s~~~d~~i~i~~~  314 (315)
                      +|      ++++|++++.||+|+||++
T Consensus       361 ~~~~~~~p~~~~l~sgs~Dg~i~iW~~  387 (393)
T 1erj_A          361 ANGSSLGPEYNVFATGSGDCKARIWKY  387 (393)
T ss_dssp             CSSCTTCTTCEEEEEEETTSEEEEEEE
T ss_pred             cCCcCcCCCCCEEEEECCCCcEEECcc
Confidence            86      6789999999999999996

>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}

Probab=100.00  E-value=9.8e-49  Score=332.20  Aligned_cols=285  Identities=19%  Similarity=0.211  Sum_probs=237.0

Q ss_pred             hccccceEEEEEeecCCCCCcEEEEeeC------CCcEEEEcCCCCcc----eeeccccccceEEEEeCCCCCEEEEeeC
Q 021247           11 NAHEESVWAVTWVPATETRPALLLTGSL------DETVKLWRPDDMQL----ERTNTGHCLGVVSVAAHPSGIIAASASL   80 (315)
Q Consensus        11 ~~h~~~v~~v~~~~~~~~~~~~l~sgs~------d~~v~~w~~~~~~~----~~~~~~h~~~v~~~~~~~~g~~l~s~~~   80 (315)
                      .+|+..|++|+|+|++.    +|++||.      |+.|++|+..+...    .....+|..+|.+++|+|++.++ +++.
T Consensus        39 ~~H~~~V~~v~fSpDG~----~las~s~d~~~~wd~~v~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~s~d~~~l-~~s~  113 (357)
T 4g56_B           39 ACMEVQIGAVRYRRDGA----LLLAASSLSSRTWGGSIWVFKDPEGAPNESLCTAGVQTEAGVTDVAWVSEKGIL-VASD  113 (357)
T ss_dssp             -CCCSEEEEEEECSSSC----EEEEEECSSSSSCCEEEEEESSCC---CGGGCSEEEECSSCEEEEEEETTTEEE-EEET
T ss_pred             ccccCCEEEEEECCCCC----EEEEEcCCCCccccCeEEEEECCCCCcceeEecccCCCCCCEEEEEEcCCCCEE-EEEC
Confidence            47999999999999886    7999997      78899998765432    22335688899999999998655 5788


Q ss_pred             CCeEEEEECCCCceeE----EeeCCcccEEEEEECCCCCeEEEEecCCCeEEEEecCCcceeeeecCCCCCCCCCCccCC
Q 021247           81 DSFVRVFDVDTNASIA----TLEASPSEVWQMQFDPKGTTLAVAGGGSASVKLWDTATWNLIATLSIPRPEGLKPTDKSS  156 (315)
Q Consensus        81 d~~i~~w~~~~~~~~~----~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~  156 (315)
                      |++|++||+.+++...    ....|...|.+++|+|+++.+ ++++.|++|++||+++++.+..+.             .
T Consensus       114 dg~v~lWd~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l-~sgs~dg~v~iwd~~~~~~~~~~~-------------~  179 (357)
T 4g56_B          114 SGAVELWEILEKESLLVNKFAKYEHDDIVKTLSVFSDGTQA-VSGGKDFSVKVWDLSQKAVLKSYN-------------A  179 (357)
T ss_dssp             TSCEEEC--------CCCCEEECCCSSCEEEEEECSSSSEE-EEEETTSCEEEEETTTTEEEEEEC-------------C
T ss_pred             CCEEEEeeccccceeEEEeeccCCCCCCEEEEEECCCCCEE-EEEeCCCeEEEEECCCCcEEEEEc-------------C
Confidence            9999999998876432    334678899999999998865 678899999999999988777663             2


Q ss_pred             CCcceEEEEECCCCC-EEEEecCCCcEEEEEcccceeeeee--cCCccceEEEEEcCCCCcEEEEEeCCCeEEEEeCCCC
Q 021247          157 SKKFVLSVAWSPDGR-RIACGSMDGTISVFDVTRAKFLHHL--EGHFMPVRSLVYSPVDPRVLFSASDDTHVHMYDAEGK  233 (315)
Q Consensus       157 ~~~~i~~~~~~~~~~-~l~~~s~dg~i~i~d~~~~~~~~~~--~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~  233 (315)
                      |...|.+++|+|++. ++++++.|+.|++||+++++....+  ..|...+.+++|+|.++.+|++|+.|+.|++||++.+
T Consensus       180 h~~~v~~v~~s~~~~~~~~s~~~dg~v~~wd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~~la~g~~d~~i~~wd~~~~  259 (357)
T 4g56_B          180 HSSEVNCVAACPGKDTIFLSCGEDGRILLWDTRKPKPATRIDFCASDTIPTSVTWHPEKDDTFACGDETGNVSLVNIKNP  259 (357)
T ss_dssp             CSSCEEEEEECTTCSSCEEEEETTSCEEECCTTSSSCBCBCCCTTCCSCEEEEEECTTSTTEEEEEESSSCEEEEESSCG
T ss_pred             CCCCEEEEEEccCCCceeeeeccCCceEEEECCCCceeeeeeeccccccccchhhhhcccceEEEeecccceeEEECCCC
Confidence            445699999999875 7889999999999999988776554  3567789999999988889999999999999999999


Q ss_pred             eeEEEeecccccEEEEEEcCCC-CeEEEEeCCCcEEEEecCccceehcccccccceEEEEEee-CCCEEEEEeCCCcEEE
Q 021247          234 SLVTAMSGHASWVLSVDASPDG-AAITTGSSDRTVKLWDLNMRAAMQSMTNHTDQVWGVSFRP-LGGRVVSVSDDKSISL  311 (315)
Q Consensus       234 ~~~~~~~~~~~~i~~~~~~~~~-~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~s~~~d~~i~i  311 (315)
                      +.+..+.+|...|++++|+|++ ++|++|+.|++|+|||+++++.+..+ +|.+.|++++|+| ++.+|+++|.||+|++
T Consensus       260 ~~~~~~~~~~~~v~~l~~sp~~~~~lasgs~D~~i~iwd~~~~~~~~~~-~H~~~V~~vafsP~d~~~l~s~s~Dg~v~i  338 (357)
T 4g56_B          260 DSAQTSAVHSQNITGLAYSYHSSPFLASISEDCTVAVLDADFSEVFRDL-SHRDFVTGVAWSPLDHSKFTTVGWDHKVLH  338 (357)
T ss_dssp             GGCEEECCCSSCEEEEEECSSSSCCEEEEETTSCEEEECTTSCEEEEEC-CCSSCEEEEEECSSSTTEEEEEETTSCEEE
T ss_pred             cEeEEEeccceeEEEEEEcCCCCCEEEEEeCCCEEEEEECCCCcEeEEC-CCCCCEEEEEEeCCCCCEEEEEcCCCeEEE
Confidence            9999999999999999999987 58999999999999999998877654 7999999999999 7899999999999999


Q ss_pred             eecC
Q 021247          312 YEYS  315 (315)
Q Consensus       312 ~~~~  315 (315)
                      |++.
T Consensus       339 W~~~  342 (357)
T 4g56_B          339 HHLP  342 (357)
T ss_dssp             EECC
T ss_pred             EECC
Confidence            9973

>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R

Probab=100.00  E-value=1.2e-47  Score=323.94  Aligned_cols=292  Identities=20%  Similarity=0.328  Sum_probs=238.6

Q ss_pred             hhhhhccccceEEEEEeecCC--CCCcEEEEeeCCCcEEEEcCCCCc-------ceeeccccccceEEEEeCCCCCEEEE
Q 021247            7 KSVENAHEESVWAVTWVPATE--TRPALLLTGSLDETVKLWRPDDMQ-------LERTNTGHCLGVVSVAAHPSGIIAAS   77 (315)
Q Consensus         7 ~~~~~~h~~~v~~v~~~~~~~--~~~~~l~sgs~d~~v~~w~~~~~~-------~~~~~~~h~~~v~~~~~~~~g~~l~s   77 (315)
                      ..++.+|++.|++++|.+...  ....+|+||+.|++|++|+....+       ....+.+|...|.+++|+|++.++++
T Consensus        14 ~~~l~gH~~~V~~~~~~~s~~~~~d~~~l~sgs~D~~v~iWd~~~~~~~~~~~~~~~~l~~h~~~V~~~~~~~~~~~l~s   93 (343)
T 2xzm_R           14 RGILEGHSDWVTSIVAGFSQKENEDSPVLISGSRDKTVMIWKLYEEEQNGYFGIPHKALTGHNHFVSDLALSQENCFAIS   93 (343)
T ss_dssp             EEEEECCSSCEEEEEECCCSSTTCCCCEEEEEETTSCEEEEEECSSCCSSBSEEEEEEECCCSSCEEEEEECSSTTEEEE
T ss_pred             eeeeccchhhhhheeeEEEeecCCCCCEEEEEcCCCEEEEEECCcCCcccccccccchhccCCCceEEEEECCCCCEEEE
Confidence            345789999999999933211  123489999999999999976432       34557899999999999999999999


Q ss_pred             eeCCCeEEEEECCCCceeEEeeCCcccEEEEEECCCCCeEEEEecCCCeEEEEecCCcceeeeecCCCCCCCCCCccCCC
Q 021247           78 ASLDSFVRVFDVDTNASIATLEASPSEVWQMQFDPKGTTLAVAGGGSASVKLWDTATWNLIATLSIPRPEGLKPTDKSSS  157 (315)
Q Consensus        78 ~~~d~~i~~w~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~  157 (315)
                      ++.|++|++||+.+++.+..+..|...|.+++|+|+++.+ ++++.|++|++||+.... .....          ....+
T Consensus        94 ~s~D~~v~lwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~l-~s~~~d~~i~~wd~~~~~-~~~~~----------~~~~~  161 (343)
T 2xzm_R           94 SSWDKTLRLWDLRTGTTYKRFVGHQSEVYSVAFSPDNRQI-LSAGAEREIKLWNILGEC-KFSSA----------EKENH  161 (343)
T ss_dssp             EETTSEEEEEETTSSCEEEEEECCCSCEEEEEECSSTTEE-EEEETTSCEEEEESSSCE-EEECC----------TTTSC
T ss_pred             EcCCCcEEEEECCCCcEEEEEcCCCCcEEEEEECCCCCEE-EEEcCCCEEEEEeccCCc-eeeee----------cccCC
Confidence            9999999999999999999999999999999999999865 678899999999997422 21111          11235


Q ss_pred             CcceEEEEECCCC----------CEEEEecCCCcEEEEEcccceeeeeecCCccceEEEEEcCCCCcEEEEEeCCCeEEE
Q 021247          158 KKFVLSVAWSPDG----------RRIACGSMDGTISVFDVTRAKFLHHLEGHFMPVRSLVYSPVDPRVLFSASDDTHVHM  227 (315)
Q Consensus       158 ~~~i~~~~~~~~~----------~~l~~~s~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~~  227 (315)
                      ...|.+++|+|++          .+|++++.|+.|++||. ..+....+.+|...|.+++|+| ++++|++++.|+.|++
T Consensus       162 ~~~v~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~-~~~~~~~~~~h~~~v~~~~~s~-~g~~l~sgs~dg~v~i  239 (343)
T 2xzm_R          162 SDWVSCVRYSPIMKSANKVQPFAPYFASVGWDGRLKVWNT-NFQIRYTFKAHESNVNHLSISP-NGKYIATGGKDKKLLI  239 (343)
T ss_dssp             SSCEEEEEECCCCCSCSCCCSSCCEEEEEETTSEEEEEET-TTEEEEEEECCSSCEEEEEECT-TSSEEEEEETTCEEEE
T ss_pred             CceeeeeeeccccccccccCCCCCEEEEEcCCCEEEEEcC-CCceeEEEcCccccceEEEECC-CCCEEEEEcCCCeEEE
Confidence            5679999999987          78999999999999994 5566777889999999999999 6789999999999999


Q ss_pred             EeCCC-CeeEEEeecccccEEEEEEcCCCCeEEEEeCCCcEEEEecCccceeh--cc-----------cccccceEEEEE
Q 021247          228 YDAEG-KSLVTAMSGHASWVLSVDASPDGAAITTGSSDRTVKLWDLNMRAAMQ--SM-----------TNHTDQVWGVSF  293 (315)
Q Consensus       228 wd~~~-~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~--~~-----------~~~~~~v~~~~~  293 (315)
                      ||+.. ......+ .+...|.+++|+|+++++++ +.|+.|++|++.+++...  .+           .+|...+++++|
T Consensus       240 wd~~~~~~~~~~~-~~~~~v~~v~~sp~~~~la~-~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~  317 (343)
T 2xzm_R          240 WDILNLTYPQREF-DAGSTINQIAFNPKLQWVAV-GTDQGVKIFNLMTQSKAPVCTIEAEPITKAEGQKGKNPQCTSLAW  317 (343)
T ss_dssp             EESSCCSSCSEEE-ECSSCEEEEEECSSSCEEEE-EESSCEEEEESSSCCSCSEEECCCCSGGGBTTBCCSCCCEEEEEE
T ss_pred             EECCCCcccceee-cCCCcEEEEEECCCCCEEEE-ECCCCEEEEEeCCCCCCceEEeecCcchhhhhhcCCCCceEEEEE
Confidence            99843 3333333 34566999999999987764 568889999998765433  22           267788999999


Q ss_pred             eeCCCEEEEEeCCCcEEEeec
Q 021247          294 RPLGGRVVSVSDDKSISLYEY  314 (315)
Q Consensus       294 s~~~~~l~s~~~d~~i~i~~~  314 (315)
                      +|+|++|++++.||+|++|++
T Consensus       318 sp~g~~l~sg~~Dg~v~~w~~  338 (343)
T 2xzm_R          318 NALGKKLFAGFTDGVIRTFSF  338 (343)
T ss_dssp             CSSSCCEEEEETTSEEEEEEE
T ss_pred             CCCCCeEEEecCCceEEEEEE
Confidence            999999999999999999986

>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A

Probab=100.00  E-value=8.1e-48  Score=348.66  Aligned_cols=301  Identities=21%  Similarity=0.305  Sum_probs=250.7

Q ss_pred             hhhccccceEEEEEeecCCCCCcEEEEeeCCCcEEEEcCCCCcceeeccccccceEEEEeCCCCCEEEEeeCCCeEEEEE
Q 021247            9 VENAHEESVWAVTWVPATETRPALLLTGSLDETVKLWRPDDMQLERTNTGHCLGVVSVAAHPSGIIAASASLDSFVRVFD   88 (315)
Q Consensus         9 ~~~~h~~~v~~v~~~~~~~~~~~~l~sgs~d~~v~~w~~~~~~~~~~~~~h~~~v~~~~~~~~g~~l~s~~~d~~i~~w~   88 (315)
                      .+.+|.+.|++++|+|...   ..|++|+.|++|++|+..+.++...+.+|...|.+++|+|+|.+|++++.|++|++||
T Consensus       142 ~l~gh~~~v~~v~f~p~~~---~~l~s~s~D~~v~lwd~~~~~~~~~l~~H~~~V~~v~fspdg~~las~s~D~~i~lwd  218 (611)
T 1nr0_A          142 NLTGQARAMNSVDFKPSRP---FRIISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNPDGSLFASTGGDGTIVLYN  218 (611)
T ss_dssp             CCCCCSSCEEEEEECSSSS---CEEEEEETTSCEEEEETTTBEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEE
T ss_pred             eecCCCCCceEEEECCCCC---eEEEEEeCCCeEEEEECCCCeEeeeeccccCceEEEEECCCCCEEEEEECCCcEEEEE
Confidence            3568999999999999754   2699999999999999888888888899999999999999999999999999999999


Q ss_pred             CCCCceeEEee-------CCcccEEEEEECCCCCeEEEEecCCCeEEEEecCCcceeeeecCCCCCC-------------
Q 021247           89 VDTNASIATLE-------ASPSEVWQMQFDPKGTTLAVAGGGSASVKLWDTATWNLIATLSIPRPEG-------------  148 (315)
Q Consensus        89 ~~~~~~~~~~~-------~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~-------------  148 (315)
                      +.+++.+..+.       .|...|.+++|+|+++.+ ++++.|++|++||+++++.+..+.......             
T Consensus       219 ~~~g~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l-~s~s~D~~v~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  297 (611)
T 1nr0_A          219 GVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKI-ASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQAL  297 (611)
T ss_dssp             TTTCCEEEECBCTTSSSCSSSSCEEEEEECTTSSEE-EEEETTSEEEEEETTTTEEEEEEECCSSGGGCEEEEEECSSCE
T ss_pred             CCCCcEeeeeccccccccccCCCEEEEEECCCCCEE-EEEeCCCeEEEEeCCCCceeeeecCCCCccceeEEEEEcCCEE
Confidence            99998888774       688999999999998865 688899999999999888776654321100             


Q ss_pred             -----------------CCCCccCCCCcceEEEEECCCCCEEEEecCCCcEEEEEcccceeeeee-c-------------
Q 021247          149 -----------------LKPTDKSSSKKFVLSVAWSPDGRRIACGSMDGTISVFDVTRAKFLHHL-E-------------  197 (315)
Q Consensus       149 -----------------~~~~~~~~~~~~i~~~~~~~~~~~l~~~s~dg~i~i~d~~~~~~~~~~-~-------------  197 (315)
                                       ........|...|.+++|+|++++|++++.|+.|++||+.+++....+ .             
T Consensus       298 ~s~s~d~~i~~~~~~~~~~~~~~~gh~~~v~~l~~spdg~~l~s~s~D~~v~~Wd~~~~~~~~~~~~~h~~~v~~~~~s~  377 (611)
T 1nr0_A          298 VSISANGFINFVNPELGSIDQVRYGHNKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIKTTS  377 (611)
T ss_dssp             EEEETTCCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEECSSCSCSSCEEEEEECT
T ss_pred             EEEeCCCcEEEEeCCCCCcceEEcCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCceeeecccCCcceEEEEEECC
Confidence                             000112357778999999999999999999999999998765432211 0             


Q ss_pred             --------------------------------------------------------------------CCccceEEEEEc
Q 021247          198 --------------------------------------------------------------------GHFMPVRSLVYS  209 (315)
Q Consensus       198 --------------------------------------------------------------------~~~~~v~~~~~~  209 (315)
                                                                                          .|...+.+++|+
T Consensus       378 ~~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~va~s  457 (611)
T 1nr0_A          378 KGDLFTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAACYKHIAIYSHGKLTEVPISYNSSCVALS  457 (611)
T ss_dssp             TSCEEEEETTTEEEEECSSSSSSCTTSCCEEECSSCEEEEEECTTSSCEEEEESSEEEEEETTEEEEEECSSCEEEEEEC
T ss_pred             CCcEEEEEcCCceEEeecCCccccccceeeeecCCCCcEEEEeCCCcEEEEEeCceEEEEeCCceeeeecCCCceEEEEe
Confidence                                                                                022346788899


Q ss_pred             CCCCcEEEEEeCCCeEEEEeCCCCee--EEEeecccccEEEEEEcCCCCeEEEEeCCCcEEEEecCc-cceehc--cccc
Q 021247          210 PVDPRVLFSASDDTHVHMYDAEGKSL--VTAMSGHASWVLSVDASPDGAAITTGSSDRTVKLWDLNM-RAAMQS--MTNH  284 (315)
Q Consensus       210 ~~~~~~l~s~~~d~~i~~wd~~~~~~--~~~~~~~~~~i~~~~~~~~~~~l~s~~~d~~i~iwd~~~-~~~~~~--~~~~  284 (315)
                      | ++++|++|+.|+.|++||+.++..  +.. .+|...|++++|+|++++|++++.|++|++|++.. ++....  ...|
T Consensus       458 p-dg~~lasgs~D~~v~lwd~~~~~~~~~~~-~~h~~~v~~v~fspdg~~las~s~d~~v~~w~~~~~~~~~~~~~~~~H  535 (611)
T 1nr0_A          458 N-DKQFVAVGGQDSKVHVYKLSGASVSEVKT-IVHPAEITSVAFSNNGAFLVATDQSRKVIPYSVANNFELAHTNSWTFH  535 (611)
T ss_dssp             T-TSCEEEEEETTSEEEEEEEETTEEEEEEE-EECSSCEEEEEECTTSSEEEEEETTSCEEEEEGGGTTEESCCCCCCCC
T ss_pred             C-CCCEEEEeCCCCeEEEEEccCCceeeeec-cCCCCceEEEEECCCCCEEEEEcCCCCEEEEEcCCCCceeeeeeeeec
Confidence            8 678999999999999999987643  233 67999999999999999999999999999999987 555443  3459


Q ss_pred             ccceEEEEEeeCCCEEEEEeCCCcEEEeecC
Q 021247          285 TDQVWGVSFRPLGGRVVSVSDDKSISLYEYS  315 (315)
Q Consensus       285 ~~~v~~~~~s~~~~~l~s~~~d~~i~i~~~~  315 (315)
                      ...|++++|+|+|++|++++.|++|+||++.
T Consensus       536 ~~~V~~v~fspdg~~lasgs~D~~v~lW~~~  566 (611)
T 1nr0_A          536 TAKVACVSWSPDNVRLATGSLDNSVIVWNMN  566 (611)
T ss_dssp             SSCEEEEEECTTSSEEEEEETTSCEEEEETT
T ss_pred             ccceeEEEECCCCCEEEEEECCCcEEEEECC
Confidence            9999999999999999999999999999973

>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a

Probab=100.00  E-value=2.3e-45  Score=309.01  Aligned_cols=292  Identities=20%  Similarity=0.335  Sum_probs=247.9

Q ss_pred             cchhhhhhccccceEEEEEeecCCCCCcEEEEeeCCCcEEEEcCCCCc-----ceeeccccccceEEEEeCCCCCEEEEe
Q 021247            4 AGLKSVENAHEESVWAVTWVPATETRPALLLTGSLDETVKLWRPDDMQ-----LERTNTGHCLGVVSVAAHPSGIIAASA   78 (315)
Q Consensus         4 ~~~~~~~~~h~~~v~~v~~~~~~~~~~~~l~sgs~d~~v~~w~~~~~~-----~~~~~~~h~~~v~~~~~~~~g~~l~s~   78 (315)
                      +.+...+++|++.|++|+|+|...   .+|+|||.|++|++||+...+     ..+.+.+|...|.++.|+|+|.+++++
T Consensus        28 ~~l~~tL~GH~~~V~~v~~sp~~~---~~l~S~s~D~~i~vWd~~~~~~~~~~~~~~l~~h~~~V~~~~~s~dg~~l~s~  104 (340)
T 4aow_A           28 MTLRGTLKGHNGWVTQIATTPQFP---DMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVVISSDGQFALSG  104 (340)
T ss_dssp             EEEEEEECCCSSCEEEEEECTTCT---TEEEEEETTSCEEEEEECCSSSCSEEEEEEECCCSSCEEEEEECTTSSEEEEE
T ss_pred             eEEEEEECCccCCEEEEEEeCCCC---CEEEEEcCCCeEEEEECCCCCcccceeeEEEeCCCCCEEEEEECCCCCEEEEE
Confidence            345566889999999999999643   389999999999999976543     345578899999999999999999999


Q ss_pred             eCCCeEEEEECCCCceeEEeeCCcccEEEEEECCCCCeEEEEecCCCeEEEEecCCcceeeeecCCCCCCCCCCccCCCC
Q 021247           79 SLDSFVRVFDVDTNASIATLEASPSEVWQMQFDPKGTTLAVAGGGSASVKLWDTATWNLIATLSIPRPEGLKPTDKSSSK  158 (315)
Q Consensus        79 ~~d~~i~~w~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~  158 (315)
                      +.|+.|++|+............+...+..+.++|.+..+ ++++.|+.+++||..........            ...+.
T Consensus       105 ~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~s~s~d~~~~~~d~~~~~~~~~~------------~~~~~  171 (340)
T 4aow_A          105 SWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQI-VSGSRDKTIKLWNTLGVCKYTVQ------------DESHS  171 (340)
T ss_dssp             ETTSEEEEEETTTTEEEEEEECCSSCEEEEEECTTSSCE-EEEETTSCEEEECTTSCEEEEEC------------SSSCS
T ss_pred             cccccceEEeecccceeeeecCCCCceeEEEEeecCccc-eeecCCCeEEEEEeCCCceEEEE------------ecccc
Confidence            999999999999998888888888889999999988865 67889999999998764332211            12345


Q ss_pred             cceEEEEECCCC--CEEEEecCCCcEEEEEcccceeeeeecCCccceEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCeeE
Q 021247          159 KFVLSVAWSPDG--RRIACGSMDGTISVFDVTRAKFLHHLEGHFMPVRSLVYSPVDPRVLFSASDDTHVHMYDAEGKSLV  236 (315)
Q Consensus       159 ~~i~~~~~~~~~--~~l~~~s~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~  236 (315)
                      ..+..++|++++  ..+++++.|+.|++||+++++....+.+|..+|.+++|+| ++++|++++.|+.|++||++..+.+
T Consensus       172 ~~v~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~~~~~~~~h~~~v~~~~~s~-~~~~l~s~s~Dg~i~iwd~~~~~~~  250 (340)
T 4aow_A          172 EWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCKLKTNHIGHTGYLNTVTVSP-DGSLCASGGKDGQAMLWDLNEGKHL  250 (340)
T ss_dssp             SCEEEEEECSCSSSCEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECT-TSSEEEEEETTCEEEEEETTTTEEE
T ss_pred             CcccceEEccCCCCcEEEEEcCCCEEEEEECCCCceeeEecCCCCcEEEEEECC-CCCEEEEEeCCCeEEEEEeccCcee
Confidence            568899998864  4678999999999999999999999999999999999998 6789999999999999999999888


Q ss_pred             EEeecccccEEEEEEcCCCCeEEEEeCCCcEEEEecCccceehcc---------cccccceEEEEEeeCCCEEEEEeCCC
Q 021247          237 TAMSGHASWVLSVDASPDGAAITTGSSDRTVKLWDLNMRAAMQSM---------TNHTDQVWGVSFRPLGGRVVSVSDDK  307 (315)
Q Consensus       237 ~~~~~~~~~i~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~---------~~~~~~v~~~~~s~~~~~l~s~~~d~  307 (315)
                      ..+..+ ..+..+.++|++. +++++.|+.|++||++.+..+..+         ..|...|++++|+|+|++|++++.||
T Consensus       251 ~~~~~~-~~v~~~~~~~~~~-~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~Dg  328 (340)
T 4aow_A          251 YTLDGG-DIINALCFSPNRY-WLCAATGPSIKIWDLEGKIIVDELKQEVISTSSKAEPPQCTSLAWSADGQTLFAGYTDN  328 (340)
T ss_dssp             EEEECS-SCEEEEEECSSSS-EEEEEETTEEEEEETTTTEEEEEECCC-------CCCCCEEEEEECTTSSEEEEEETTS
T ss_pred             eeecCC-ceEEeeecCCCCc-eeeccCCCEEEEEECCCCeEEEeccccceeeeccCCCCCEEEEEECCCCCEEEEEeCCC
Confidence            777654 5799999999876 556677999999999876554332         46788999999999999999999999


Q ss_pred             cEEEeec
Q 021247          308 SISLYEY  314 (315)
Q Consensus       308 ~i~i~~~  314 (315)
                      +|+|||+
T Consensus       329 ~v~iW~~  335 (340)
T 4aow_A          329 LVRVWQV  335 (340)
T ss_dssp             CEEEEEE
T ss_pred             EEEEEeC
Confidence            9999996

>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.2e-45  Score=313.80  Aligned_cols=298  Identities=19%  Similarity=0.291  Sum_probs=258.6

Q ss_pred             hhccccceEEEEEeecCCCCCcEEEEeeCCCcEEEEcCCCCcceeeccccccceEEEEeCCCCCEEEEeeCCCeEEEEEC
Q 021247           10 ENAHEESVWAVTWVPATETRPALLLTGSLDETVKLWRPDDMQLERTNTGHCLGVVSVAAHPSGIIAASASLDSFVRVFDV   89 (315)
Q Consensus        10 ~~~h~~~v~~v~~~~~~~~~~~~l~sgs~d~~v~~w~~~~~~~~~~~~~h~~~v~~~~~~~~g~~l~s~~~d~~i~~w~~   89 (315)
                      +.+|++.|++++|+|.++    +|++|+.||.|++|+..+.+....+.+|...|.+++|+|++.++++++.|+.|++||+
T Consensus        28 l~~h~~~v~~~~~s~~~~----~l~~~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~  103 (369)
T 3zwl_B           28 LTGHERPLTQVKYNKEGD----LLFSCSKDSSASVWYSLNGERLGTLDGHTGTIWSIDVDCFTKYCVTGSADYSIKLWDV  103 (369)
T ss_dssp             EECCSSCEEEEEECTTSC----EEEEEESSSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTTEEEEEET
T ss_pred             EEEeeceEEEEEEcCCCC----EEEEEeCCCEEEEEeCCCchhhhhhhhcCCcEEEEEEcCCCCEEEEEeCCCeEEEEEC
Confidence            579999999999999765    7999999999999999999888889999999999999999999999999999999999


Q ss_pred             CCCceeEEeeCCcccEEEEEECCCCCeEEEEecCC-----CeEEEEecCCcceeeeecCCCCCCCCCCccCCCCcceEEE
Q 021247           90 DTNASIATLEASPSEVWQMQFDPKGTTLAVAGGGS-----ASVKLWDTATWNLIATLSIPRPEGLKPTDKSSSKKFVLSV  164 (315)
Q Consensus        90 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d-----~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~  164 (315)
                      .+++.+..+. +...+.+++|+|+++.++ +++.+     +.|.+||++..+....+...................+.++
T Consensus       104 ~~~~~~~~~~-~~~~v~~~~~~~~~~~l~-~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  181 (369)
T 3zwl_B          104 SNGQCVATWK-SPVPVKRVEFSPCGNYFL-AILDNVMKNPGSINIYEIERDSATHELTKVSEEPIHKIITHEGLDAATVA  181 (369)
T ss_dssp             TTCCEEEEEE-CSSCEEEEEECTTSSEEE-EEECCBTTBCCEEEEEEEEECTTTCCEEEECSSCSEEEECCTTCCCEEEE
T ss_pred             CCCcEEEEee-cCCCeEEEEEccCCCEEE-EecCCccCCCCEEEEEEecCCccceeecccccceeeeccCCcCccceeEE
Confidence            9999888887 778999999999998765 55666     9999999986544322221111111000111112269999


Q ss_pred             EECCCCCEEEEecCCCcEEEEEccc-ceeeeeecCCccceEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCeeEEEeeccc
Q 021247          165 AWSPDGRRIACGSMDGTISVFDVTR-AKFLHHLEGHFMPVRSLVYSPVDPRVLFSASDDTHVHMYDAEGKSLVTAMSGHA  243 (315)
Q Consensus       165 ~~~~~~~~l~~~s~dg~i~i~d~~~-~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~  243 (315)
                      +|+|++++|++++.||.|++||+++ .+....+..|...|.+++|+| ++.+|++++.|+.|++||++.++.+..+. +.
T Consensus       182 ~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~i~v~d~~~~~~~~~~~-~~  259 (369)
T 3zwl_B          182 GWSTKGKYIIAGHKDGKISKYDVSNNYEYVDSIDLHEKSISDMQFSP-DLTYFITSSRDTNSFLVDVSTLQVLKKYE-TD  259 (369)
T ss_dssp             EECGGGCEEEEEETTSEEEEEETTTTTEEEEEEECCSSCEEEEEECT-TSSEEEEEETTSEEEEEETTTCCEEEEEE-CS
T ss_pred             EEcCCCCEEEEEcCCCEEEEEECCCCcEeEEEEecCCCceeEEEECC-CCCEEEEecCCceEEEEECCCCceeeeec-CC
Confidence            9999999999999999999999998 788888899999999999999 67899999999999999999988877776 67


Q ss_pred             ccEEEEEEcCCCCeEEEEeCCC--------------cEEEEecCccceehcccccccceEEEEEeeCCCEEEEEeCCCcE
Q 021247          244 SWVLSVDASPDGAAITTGSSDR--------------TVKLWDLNMRAAMQSMTNHTDQVWGVSFRPLGGRVVSVSDDKSI  309 (315)
Q Consensus       244 ~~i~~~~~~~~~~~l~s~~~d~--------------~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~i  309 (315)
                      ..+..+.|+|+++++++++.++              .+++||+..++.+..+.+|...|++++|+|++++|++++.||+|
T Consensus       260 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~v  339 (369)
T 3zwl_B          260 CPLNTAVITPLKEFIILGGGQEAKDVTTTSANEGKFEARFYHKIFEEEIGRVQGHFGPLNTVAISPQGTSYASGGEDGFI  339 (369)
T ss_dssp             SCEEEEEECSSSSEEEEEECCC-------------CEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSEEEEEETTSEE
T ss_pred             CCceeEEecCCCceEEEeecCCCceEEEEecCCCcceeEEEecCCCcchhheecccCcEEEEEECCCCCEEEEEcCCCeE
Confidence            8899999999999999999998              89999999999999999999999999999999999999999999


Q ss_pred             EEeecC
Q 021247          310 SLYEYS  315 (315)
Q Consensus       310 ~i~~~~  315 (315)
                      +||++.
T Consensus       340 ~iw~~~  345 (369)
T 3zwl_B          340 RLHHFE  345 (369)
T ss_dssp             EEEEEC
T ss_pred             EEEECc
Confidence            999974

>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A

Probab=100.00  E-value=7.4e-46  Score=335.84  Aligned_cols=287  Identities=20%  Similarity=0.324  Sum_probs=247.7

Q ss_pred             hhhhhccccceEEEEEeecCCCCCcEEEEeeCCCcEEEEcCCCCc--ceeeccccccceEEEEeCCCCCEEEEeeCC---
Q 021247            7 KSVENAHEESVWAVTWVPATETRPALLLTGSLDETVKLWRPDDMQ--LERTNTGHCLGVVSVAAHPSGIIAASASLD---   81 (315)
Q Consensus         7 ~~~~~~h~~~v~~v~~~~~~~~~~~~l~sgs~d~~v~~w~~~~~~--~~~~~~~h~~~v~~~~~~~~g~~l~s~~~d---   81 (315)
                      ..++.+|++.|++++|+|++.    +|++|+.|++|++||..+.+  +...+.+|..+|.+++|+|+|.++++++.+   
T Consensus        52 ~~~~~~h~~~v~~~~~spdg~----~lasg~~d~~v~lWd~~~~~~~~~~~~~~~~~~v~~v~fs~dg~~l~~~~~~~~~  127 (611)
T 1nr0_A           52 TEIYTEHSHQTTVAKTSPSGY----YCASGDVHGNVRIWDTTQTTHILKTTIPVFSGPVKDISWDSESKRIAAVGEGRER  127 (611)
T ss_dssp             CEEECCCSSCEEEEEECTTSS----EEEEEETTSEEEEEESSSTTCCEEEEEECSSSCEEEEEECTTSCEEEEEECCSSC
T ss_pred             CeEecCCCCceEEEEECCCCc----EEEEEeCCCCEEEeECCCCcceeeEeecccCCceEEEEECCCCCEEEEEECCCCc
Confidence            345679999999999999875    79999999999999986433  345677899999999999999999988865   


Q ss_pred             -CeEEEEECCCCceeEEeeCCcccEEEEEECCCCCeEEEEecCCCeEEEEecCCcceeeeecCCCCCCCCCCccCCCCcc
Q 021247           82 -SFVRVFDVDTNASIATLEASPSEVWQMQFDPKGTTLAVAGGGSASVKLWDTATWNLIATLSIPRPEGLKPTDKSSSKKF  160 (315)
Q Consensus        82 -~~i~~w~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  160 (315)
                       +.|++||  .+.....+..|...|.+++|+|++...+++++.|++|++||..+.+....+.             .|...
T Consensus       128 ~~~v~~wd--~~~~~~~l~gh~~~v~~v~f~p~~~~~l~s~s~D~~v~lwd~~~~~~~~~l~-------------~H~~~  192 (611)
T 1nr0_A          128 FGHVFLFD--TGTSNGNLTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKFKSTFG-------------EHTKF  192 (611)
T ss_dssp             SEEEEETT--TCCBCBCCCCCSSCEEEEEECSSSSCEEEEEETTSCEEEEETTTBEEEEEEC-------------CCSSC
T ss_pred             eeEEEEee--CCCCcceecCCCCCceEEEECCCCCeEEEEEeCCCeEEEEECCCCeEeeeec-------------cccCc
Confidence             3688887  4556667888999999999999988777899999999999998877665552             35567


Q ss_pred             eEEEEECCCCCEEEEecCCCcEEEEEcccceeeeeec-------CCccceEEEEEcCCCCcEEEEEeCCCeEEEEeCCCC
Q 021247          161 VLSVAWSPDGRRIACGSMDGTISVFDVTRAKFLHHLE-------GHFMPVRSLVYSPVDPRVLFSASDDTHVHMYDAEGK  233 (315)
Q Consensus       161 i~~~~~~~~~~~l~~~s~dg~i~i~d~~~~~~~~~~~-------~~~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~  233 (315)
                      |.+++|+|++++|++++.|+.|++||+.+++....+.       +|...|.+++|+| ++++|++++.|++|++||++++
T Consensus       193 V~~v~fspdg~~las~s~D~~i~lwd~~~g~~~~~~~~~~~~~~~h~~~V~~v~~sp-dg~~l~s~s~D~~v~lWd~~~~  271 (611)
T 1nr0_A          193 VHSVRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSP-DGTKIASASADKTIKIWNVATL  271 (611)
T ss_dssp             EEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEECBCTTSSSCSSSSCEEEEEECT-TSSEEEEEETTSEEEEEETTTT
T ss_pred             eEEEEECCCCCEEEEEECCCcEEEEECCCCcEeeeeccccccccccCCCEEEEEECC-CCCEEEEEeCCCeEEEEeCCCC
Confidence            9999999999999999999999999999888877763       7999999999999 6789999999999999999876


Q ss_pred             eeEE-------------------------------------------EeecccccEEEEEEcCCCCeEEEEeCCCcEEEE
Q 021247          234 SLVT-------------------------------------------AMSGHASWVLSVDASPDGAAITTGSSDRTVKLW  270 (315)
Q Consensus       234 ~~~~-------------------------------------------~~~~~~~~i~~~~~~~~~~~l~s~~~d~~i~iw  270 (315)
                      +.+.                                           .+.+|...|.+++|+|++++|++++.|++|++|
T Consensus       272 ~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~i~~~~~~~~~~~~~~~gh~~~v~~l~~spdg~~l~s~s~D~~v~~W  351 (611)
T 1nr0_A          272 KVEKTIPVGTRIEDQQLGIIWTKQALVSISANGFINFVNPELGSIDQVRYGHNKAITALSSSADGKTLFSADAEGHINSW  351 (611)
T ss_dssp             EEEEEEECCSSGGGCEEEEEECSSCEEEEETTCCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEE
T ss_pred             ceeeeecCCCCccceeEEEEEcCCEEEEEeCCCcEEEEeCCCCCcceEEcCCCCCEEEEEEeCCCCEEEEEeCCCcEEEE
Confidence            5433                                           334788999999999999999999999999999


Q ss_pred             ecCccceehcc-cccccceEEEEEeeCCCEEEEEeCCCcEEEeec
Q 021247          271 DLNMRAAMQSM-TNHTDQVWGVSFRPLGGRVVSVSDDKSISLYEY  314 (315)
Q Consensus       271 d~~~~~~~~~~-~~~~~~v~~~~~s~~~~~l~s~~~d~~i~i~~~  314 (315)
                      |+.+++....+ .+|...|.+++|++++ .+++++.|+++++|+.
T Consensus       352 d~~~~~~~~~~~~~h~~~v~~~~~s~~~-~l~s~s~d~~v~~w~~  395 (611)
T 1nr0_A          352 DISTGISNRVFPDVHATMITGIKTTSKG-DLFTVSWDDHLKVVPA  395 (611)
T ss_dssp             ETTTCCEEECSSCSCSSCEEEEEECTTS-CEEEEETTTEEEEECS
T ss_pred             ECCCCceeeecccCCcceEEEEEECCCC-cEEEEEcCCceEEeec
Confidence            99988766554 5789999999999765 7999999999999985

>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X

Probab=100.00  E-value=3.8e-46  Score=320.54  Aligned_cols=298  Identities=19%  Similarity=0.337  Sum_probs=257.3

Q ss_pred             ccchhhhhhccccceEEEEEeecCCCCCcEEEEeeCCCcEEEEcCCCCc------ceeeccccccceEEEEeCCC----C
Q 021247            3 FAGLKSVENAHEESVWAVTWVPATETRPALLLTGSLDETVKLWRPDDMQ------LERTNTGHCLGVVSVAAHPS----G   72 (315)
Q Consensus         3 ~~~~~~~~~~h~~~v~~v~~~~~~~~~~~~l~sgs~d~~v~~w~~~~~~------~~~~~~~h~~~v~~~~~~~~----g   72 (315)
                      +.....++.+|.+.|++++|+|      .+|++|+.||.|++|+..+.+      ....+.+|..+|.++.|+|+    |
T Consensus         5 ~~~~~~~~~~h~~~i~~~~~~~------~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~g   78 (397)
T 1sq9_A            5 FIATANAGKAHDADIFSVSACN------SFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQAIERDA   78 (397)
T ss_dssp             EEEEEEESSCSSSCEEEEEECS------SEEEEEETTSEEEEEESBCCTTCCGGGGEEEEECCTTCEEEEEEEEEEETTT
T ss_pred             hhhhhhhhhhhhcCeEEEEecC------CeEEEEcCCCEEEEEECCCcccccCCCcceEEecCCCcEEEEEEecccccCC
Confidence            3455667789999999999987      279999999999999998776      66777899999999999999    9


Q ss_pred             ---CEEEEeeCCCeEEEEECCCCce-----eEEeeCC-----cccEEEEEEC----CCCCeEEEEecCCCeEEEEecCC-
Q 021247           73 ---IIAASASLDSFVRVFDVDTNAS-----IATLEAS-----PSEVWQMQFD----PKGTTLAVAGGGSASVKLWDTAT-  134 (315)
Q Consensus        73 ---~~l~s~~~d~~i~~w~~~~~~~-----~~~~~~~-----~~~v~~~~~~----~~~~~~~~~~~~d~~i~~~d~~~-  134 (315)
                         .+|++++.|+.|++|++.+++.     +..+..+     ...|.+++|+    |+++.++++++.|+.|++||+++ 
T Consensus        79 ~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~  158 (397)
T 1sq9_A           79 FELCLVATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPF  158 (397)
T ss_dssp             EEEEEEEEEETTSCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEESS
T ss_pred             ccccEEEEEcCCCCEEEEEccCCcccccccceeecccccccCCCcEEEEEEeeccCCCCceEEEEEeCCCcEEEEeCCcc
Confidence               9999999999999999998886     7788877     5899999999    98886357788999999999987 


Q ss_pred             -----cceee-----eecCCCCCCCCCCccCCCCcceEEEEECCCCCEEEEecCCCcEEEEEcccceeeeeecC---C--
Q 021247          135 -----WNLIA-----TLSIPRPEGLKPTDKSSSKKFVLSVAWSPDGRRIACGSMDGTISVFDVTRAKFLHHLEG---H--  199 (315)
Q Consensus       135 -----~~~~~-----~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~s~dg~i~i~d~~~~~~~~~~~~---~--  199 (315)
                           .+.+.     .+...      ......+...|.+++|+|++ +|++++.|+.|++||+++++.+..+..   |  
T Consensus       159 ~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~i~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~h~~  231 (397)
T 1sq9_A          159 ADESNSLTLNWSPTLELQGT------VESPMTPSQFATSVDISERG-LIATGFNNGTVQISELSTLRPLYNFESQHSMIN  231 (397)
T ss_dssp             SSHHHHTTTCCCCEEEEEEE------ECCSSSSCCCCCEEEECTTS-EEEEECTTSEEEEEETTTTEEEEEEECCC---C
T ss_pred             ccccccceeeccCcceeeee------eccccCCCCCceEEEECCCc-eEEEEeCCCcEEEEECCCCceeEEEeccccccc
Confidence                 54433     22100      00002345568999999999 999999999999999999999988888   8  


Q ss_pred             -ccceEEEEEcCCCCcEEEEEeCC---CeEEEEeCCCCeeEEEeec-------------ccccEEEEEEcCCCCeEEEEe
Q 021247          200 -FMPVRSLVYSPVDPRVLFSASDD---THVHMYDAEGKSLVTAMSG-------------HASWVLSVDASPDGAAITTGS  262 (315)
Q Consensus       200 -~~~v~~~~~~~~~~~~l~s~~~d---~~i~~wd~~~~~~~~~~~~-------------~~~~i~~~~~~~~~~~l~s~~  262 (315)
                       ..+|.+++|+| ++.+|++++.|   +.|++||++.++.+..+..             |...|.+++|+|++++|++++
T Consensus       232 ~~~~i~~i~~~~-~~~~l~~~~~d~~~g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~  310 (397)
T 1sq9_A          232 NSNSIRSVKFSP-QGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAG  310 (397)
T ss_dssp             CCCCEEEEEECS-STTEEEEEEEETTEEEEEEEETTTCCEEEEECBC--------CCBSBSSCEEEEEECSSSSEEEEEE
T ss_pred             cCCccceEEECC-CCCEEEEEecCCCCceEEEEECCCCcccceeccCcccccccccccccCCcEEEEEECCCCCEEEEEe
Confidence             99999999999 67899999999   9999999999988888888             999999999999999999999


Q ss_pred             CCCcEEEEecCccceehccc------cc---------------ccceEEEEEeeCC----------CEEEEEeCCCcEEE
Q 021247          263 SDRTVKLWDLNMRAAMQSMT------NH---------------TDQVWGVSFRPLG----------GRVVSVSDDKSISL  311 (315)
Q Consensus       263 ~d~~i~iwd~~~~~~~~~~~------~~---------------~~~v~~~~~s~~~----------~~l~s~~~d~~i~i  311 (315)
                      .|+.|++||++.++.+..+.      .|               ...|++++|+|++          ++|++++.||.|+|
T Consensus       311 ~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~l~s~~~dg~i~i  390 (397)
T 1sq9_A          311 WDGKLRFWDVKTKERITTLNMHCDDIEIEEDILAVDEHGDSLAEPGVFDVKFLKKGWRSGMGADLNESLCCVCLDRSIRW  390 (397)
T ss_dssp             TTSEEEEEETTTTEEEEEEECCGGGCSSGGGCCCBCTTSCBCSSCCEEEEEEECTTTSBSTTCTTSCEEEEEETTTEEEE
T ss_pred             CCCeEEEEEcCCCceeEEEecccCcccchhhhhccccccccccCCceeEEEeccccccccccccccceEEEecCCCcEEE
Confidence            99999999999998888887      77               8999999999998          79999999999999


Q ss_pred             eec
Q 021247          312 YEY  314 (315)
Q Consensus       312 ~~~  314 (315)
                      |++
T Consensus       391 w~~  393 (397)
T 1sq9_A          391 FRE  393 (397)
T ss_dssp             EEE
T ss_pred             EEc
Confidence            996

>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}

Probab=100.00  E-value=1.2e-45  Score=339.22  Aligned_cols=291  Identities=21%  Similarity=0.332  Sum_probs=246.3

Q ss_pred             hhhhccccceEEEEEeecCCCCCcEEEEeeCCCcEEEEcCCCCc-----ceeeccccccceEEEEeCCCCCEEEEeeCCC
Q 021247            8 SVENAHEESVWAVTWVPATETRPALLLTGSLDETVKLWRPDDMQ-----LERTNTGHCLGVVSVAAHPSGIIAASASLDS   82 (315)
Q Consensus         8 ~~~~~h~~~v~~v~~~~~~~~~~~~l~sgs~d~~v~~w~~~~~~-----~~~~~~~h~~~v~~~~~~~~g~~l~s~~~d~   82 (315)
                      ..+++|++.|++|+|+|...   .+|+|||.|++|++|+.....     ..+.+.+|...|.+++|+|+|.+|++++.|+
T Consensus       376 ~~l~~H~~~V~~v~~~~~~~---~~l~s~s~D~~i~~W~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~g~~l~sgs~Dg  452 (694)
T 3dm0_A          376 GTMRAHTDMVTAIATPIDNA---DIIVSASRDKSIILWKLTKDDKAYGVAQRRLTGHSHFVEDVVLSSDGQFALSGSWDG  452 (694)
T ss_dssp             EEEECCSSCEEEEECCTTCC---SEEEEEETTSEEEEEECCCSTTCSCEEEEEEECCSSCEEEEEECTTSSEEEEEETTS
T ss_pred             hhcccCCceeEEEEecCCCC---CEEEEEeCCCcEEEEEccCCCcccccccceecCCCCcEEEEEECCCCCEEEEEeCCC
Confidence            35679999999999998643   389999999999999986532     3456789999999999999999999999999


Q ss_pred             eEEEEECCCCceeEEeeCCcccEEEEEECCCCCeEEEEecCCCeEEEEecCCcceeeeecCCCCCCCCCCccCCCCcceE
Q 021247           83 FVRVFDVDTNASIATLEASPSEVWQMQFDPKGTTLAVAGGGSASVKLWDTATWNLIATLSIPRPEGLKPTDKSSSKKFVL  162 (315)
Q Consensus        83 ~i~~w~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~  162 (315)
                      +|++||+.++.....+..|...|.+++|+|+++.+ ++++.|++|++||........ +..         ....|...|.
T Consensus       453 ~v~vwd~~~~~~~~~~~~h~~~v~~~~~s~~~~~l-~s~s~D~~i~iwd~~~~~~~~-~~~---------~~~~h~~~v~  521 (694)
T 3dm0_A          453 ELRLWDLAAGVSTRRFVGHTKDVLSVAFSLDNRQI-VSASRDRTIKLWNTLGECKYT-ISE---------GGEGHRDWVS  521 (694)
T ss_dssp             EEEEEETTTTEEEEEEECCSSCEEEEEECTTSSCE-EEEETTSCEEEECTTSCEEEE-ECS---------STTSCSSCEE
T ss_pred             cEEEEECCCCcceeEEeCCCCCEEEEEEeCCCCEE-EEEeCCCEEEEEECCCCccee-ecc---------CCCCCCCcEE
Confidence            99999999999999999999999999999998865 688899999999986532221 110         1124667799


Q ss_pred             EEEECCCC--CEEEEecCCCcEEEEEcccceeeeeecCCccceEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCeeEEEee
Q 021247          163 SVAWSPDG--RRIACGSMDGTISVFDVTRAKFLHHLEGHFMPVRSLVYSPVDPRVLFSASDDTHVHMYDAEGKSLVTAMS  240 (315)
Q Consensus       163 ~~~~~~~~--~~l~~~s~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~  240 (315)
                      +++|+|++  ..|++++.|+.|++||+++++....+.+|...|.+++|+| ++++|++++.|+.|++||+++++.+..+.
T Consensus       522 ~~~~~~~~~~~~l~s~s~d~~v~vwd~~~~~~~~~~~~h~~~v~~v~~sp-dg~~l~sg~~Dg~i~iwd~~~~~~~~~~~  600 (694)
T 3dm0_A          522 CVRFSPNTLQPTIVSASWDKTVKVWNLSNCKLRSTLAGHTGYVSTVAVSP-DGSLCASGGKDGVVLLWDLAEGKKLYSLE  600 (694)
T ss_dssp             EEEECSCSSSCEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECT-TSSEEEEEETTSBCEEEETTTTEEEECCB
T ss_pred             EEEEeCCCCcceEEEEeCCCeEEEEECCCCcEEEEEcCCCCCEEEEEEeC-CCCEEEEEeCCCeEEEEECCCCceEEEec
Confidence            99999986  5799999999999999999999999999999999999999 67899999999999999999988877665


Q ss_pred             cccccEEEEEEcCCCCeEEEEeCCCcEEEEecCccceehccccc-------------------ccceEEEEEeeCCCEEE
Q 021247          241 GHASWVLSVDASPDGAAITTGSSDRTVKLWDLNMRAAMQSMTNH-------------------TDQVWGVSFRPLGGRVV  301 (315)
Q Consensus       241 ~~~~~i~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~-------------------~~~v~~~~~s~~~~~l~  301 (315)
                      . ...|.+++|+|++.+|++++ |+.|++||++++..+..+..+                   .-.+++++|||+|++|+
T Consensus       601 ~-~~~v~~~~~sp~~~~l~~~~-~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~spdg~~l~  678 (694)
T 3dm0_A          601 A-NSVIHALCFSPNRYWLCAAT-EHGIKIWDLESKSIVEDLKVDLKAEAEKADNSGPAATKRKVIYCTSLNWSADGSTLF  678 (694)
T ss_dssp             C-SSCEEEEEECSSSSEEEEEE-TTEEEEEETTTTEEEEEECCCCC----------------CCCCEEEEEECTTSSEEE
T ss_pred             C-CCcEEEEEEcCCCcEEEEEc-CCCEEEEECCCCCChhhhccccccccccccccccccCCceeEEeeeEEEcCCCCEEE
Confidence            4 46799999999998777665 666999999987766544322                   11378999999999999


Q ss_pred             EEeCCCcEEEeecC
Q 021247          302 SVSDDKSISLYEYS  315 (315)
Q Consensus       302 s~~~d~~i~i~~~~  315 (315)
                      +++.||+|+||++.
T Consensus       679 sgs~Dg~i~iW~i~  692 (694)
T 3dm0_A          679 SGYTDGVIRVWGIG  692 (694)
T ss_dssp             EEETTSEEEEEEC-
T ss_pred             EEcCCCeEEEEecc
Confidence            99999999999974

>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A

Probab=100.00  E-value=2.6e-45  Score=304.61  Aligned_cols=250  Identities=19%  Similarity=0.327  Sum_probs=225.3

Q ss_pred             cceeeccccccceEEEEeCCCCCEEEEeeCCCeEEEEECCCCceeEEeeCCcccEEEEEECCCCCeEEEEecCCCeEEEE
Q 021247           51 QLERTNTGHCLGVVSVAAHPSGIIAASASLDSFVRVFDVDTNASIATLEASPSEVWQMQFDPKGTTLAVAGGGSASVKLW  130 (315)
Q Consensus        51 ~~~~~~~~h~~~v~~~~~~~~g~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~~  130 (315)
                      ++.+.+.+|...|.+++|+|+|.++++++.|++|++||+.++..+..+..+..+|.+++|+|+++.+ ++|+.|++|++|
T Consensus         4 ~~~~~~~~h~~~V~~~~fsp~~~~l~s~~~dg~v~lWd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l-~s~s~d~~i~vw   82 (304)
T 2ynn_A            4 DIKKTFSNRSDRVKGIDFHPTEPWVLTTLYSGRVELWNYETQVEVRSIQVTETPVRAGKFIARKNWI-IVGSDDFRIRVF   82 (304)
T ss_dssp             CCEEEEEEECSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEEEGGGTEE-EEEETTSEEEEE
T ss_pred             eeEEeecCCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCceeEEeeccCCcEEEEEEeCCCCEE-EEECCCCEEEEE
Confidence            4566788999999999999999999999999999999999999999999999999999999998855 678899999999


Q ss_pred             ecCCcceeeeecCCCCCCCCCCccCCCCcceEEEEECCCCCEEEEecCCCcEEEEEcccc-eeeeeecCCccceEEEEEc
Q 021247          131 DTATWNLIATLSIPRPEGLKPTDKSSSKKFVLSVAWSPDGRRIACGSMDGTISVFDVTRA-KFLHHLEGHFMPVRSLVYS  209 (315)
Q Consensus       131 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~s~dg~i~i~d~~~~-~~~~~~~~~~~~v~~~~~~  209 (315)
                      |+.+++.+..+.             .|...|.+++|+|++++|++|+.|+.|++||++++ .....+.+|...|.+++|+
T Consensus        83 d~~~~~~~~~~~-------------~h~~~v~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~~h~~~v~~v~~~  149 (304)
T 2ynn_A           83 NYNTGEKVVDFE-------------AHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFN  149 (304)
T ss_dssp             ETTTCCEEEEEE-------------CCSSCEEEEEECSSSSEEEEEETTSCEEEEEGGGTTEEEEEECCCCSCEEEEEEC
T ss_pred             ECCCCcEEEEEe-------------CCCCcEEEEEEcCCCCEEEEECCCCeEEEEECCCCcchhhhhcccCCcEEEEEEC
Confidence            999888776663             34556999999999999999999999999999877 5566788999999999999


Q ss_pred             CCCCcEEEEEeCCCeEEEEeCCCCeeEEEe-ecccccEEEEEEcC--CCCeEEEEeCCCcEEEEecCccceehccccccc
Q 021247          210 PVDPRVLFSASDDTHVHMYDAEGKSLVTAM-SGHASWVLSVDASP--DGAAITTGSSDRTVKLWDLNMRAAMQSMTNHTD  286 (315)
Q Consensus       210 ~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~-~~~~~~i~~~~~~~--~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~  286 (315)
                      |.++.+|++|+.|+.|++||++.......+ .+|...+..+.++|  ++.+|++|+.|++|++||+++++.+.++.+|..
T Consensus       150 p~~~~~l~sgs~D~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~D~~i~iWd~~~~~~~~~~~~h~~  229 (304)
T 2ynn_A          150 PKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMS  229 (304)
T ss_dssp             TTCTTEEEEEETTSEEEEEETTCSSCSEEEECCCTTCEEEEEECCSTTCCEEEEEETTSEEEEEETTTTEEEEEEECCSS
T ss_pred             CCCCCEEEEEeCCCeEEEEECCCCCccceeccCCcCcEEEEEEEEcCCCCEEEEEcCCCeEEEEeCCCCccceeeCCCCC
Confidence            988889999999999999999876554444 45667899999887  678999999999999999999999999999999


Q ss_pred             ceEEEEEeeCCCEEEEEeCCCcEEEeec
Q 021247          287 QVWGVSFRPLGGRVVSVSDDKSISLYEY  314 (315)
Q Consensus       287 ~v~~~~~s~~~~~l~s~~~d~~i~i~~~  314 (315)
                      .|.+++|+|++.+|++++.||+|+|||.
T Consensus       230 ~v~~~~~~p~~~~l~s~s~Dg~i~iWd~  257 (304)
T 2ynn_A          230 NVSFAVFHPTLPIIISGSEDGTLKIWNS  257 (304)
T ss_dssp             CEEEEEECSSSSEEEEEETTSCEEEEET
T ss_pred             CEEEEEECCCCCEEEEEcCCCeEEEEEC
Confidence            9999999999999999999999999996

>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}

Probab=100.00  E-value=3e-45  Score=329.75  Aligned_cols=280  Identities=36%  Similarity=0.612  Sum_probs=248.5

Q ss_pred             hhhccccceEEEEEeecCCCCCcEEEEeeCCCcEEEEcCCCCcceeeccccccceEEEEeCCCCCEEEEeeCCCeEEEEE
Q 021247            9 VENAHEESVWAVTWVPATETRPALLLTGSLDETVKLWRPDDMQLERTNTGHCLGVVSVAAHPSGIIAASASLDSFVRVFD   88 (315)
Q Consensus         9 ~~~~h~~~v~~v~~~~~~~~~~~~l~sgs~d~~v~~w~~~~~~~~~~~~~h~~~v~~~~~~~~g~~l~s~~~d~~i~~w~   88 (315)
                      .+.+|..+|++++|+|++.    .|++++.|++|++|+..... ...+.+|...+.+++++|+|.++++++.|+.+++|+
T Consensus       298 ~~~~h~~~v~~~~~~~~~~----~l~t~~~d~~i~~w~~~~~~-~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~v~~~~  372 (577)
T 2ymu_A          298 TLTGHSSSVWGVAFSPDGQ----TIASASDDKTVKLWNRNGQH-LQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWN  372 (577)
T ss_dssp             EECCCSSCEEEEEECTTSS----EEEEEETTSCEEEEETTSCE-EEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEE
T ss_pred             EEecCCCCeEEEEECCCCC----EEEEEeCCCeEEEEeCCCCe-eEEEeCCCCCEEEEEECCCCCEEEEEeCCCEEEEEc
Confidence            4568999999999999765    79999999999999976543 456678999999999999999999999999999999


Q ss_pred             CCCCceeEEeeCCcccEEEEEECCCCCeEEEEecCCCeEEEEecCCcceeeeecCCCCCCCCCCccCCCCcceEEEEECC
Q 021247           89 VDTNASIATLEASPSEVWQMQFDPKGTTLAVAGGGSASVKLWDTATWNLIATLSIPRPEGLKPTDKSSSKKFVLSVAWSP  168 (315)
Q Consensus        89 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~  168 (315)
                      . +++.+..+..|..+|.+++|+|+++.+ ++++.|+.|++||.. ++.+..+.             .|...|.+++|+|
T Consensus       373 ~-~~~~~~~~~~~~~~v~~~~~s~dg~~l-~~~~~d~~v~~~~~~-~~~~~~~~-------------~~~~~v~~~~~s~  436 (577)
T 2ymu_A          373 R-NGQLLQTLTGHSSSVRGVAFSPDGQTI-ASASDDKTVKLWNRN-GQLLQTLT-------------GHSSSVWGVAFSP  436 (577)
T ss_dssp             T-TCCEEEEEECCSSCEEEEEECTTSSCE-EEEETTSEEEEECTT-CCEEEEEE-------------CCSSCEEEEEECT
T ss_pred             C-CCCEEEEecCCCCCeEEEEECCCCCEE-EEEeCCCEEEEEeCC-CCEEEEec-------------CCCCCeEEEEECC
Confidence            5 567778888899999999999999865 577899999999963 45554442             2445699999999


Q ss_pred             CCCEEEEecCCCcEEEEEcccceeeeeecCCccceEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCeeEEEeecccccEEE
Q 021247          169 DGRRIACGSMDGTISVFDVTRAKFLHHLEGHFMPVRSLVYSPVDPRVLFSASDDTHVHMYDAEGKSLVTAMSGHASWVLS  248 (315)
Q Consensus       169 ~~~~l~~~s~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~i~~  248 (315)
                      ++++|++++.|+.|++||+ +++.+..+.+|..+|.+++|+| ++++|++++.|+.|++||. +++.+..+.+|...|++
T Consensus       437 d~~~l~~~~~d~~v~~w~~-~~~~~~~~~~~~~~v~~~~~sp-d~~~las~~~d~~i~iw~~-~~~~~~~~~~h~~~v~~  513 (577)
T 2ymu_A          437 DDQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVRGVAFSP-DGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVRG  513 (577)
T ss_dssp             TSSEEEEEETTSEEEEEET-TSCEEEEEECCSSCEEEEEECT-TSCEEEEEETTSEEEEEET-TSCEEEEEECCSSCEEE
T ss_pred             CCCEEEEEcCCCEEEEEEC-CCCEEEEEcCCCCCEEEEEEcC-CCCEEEEEeCCCEEEEEcC-CCCEEEEEeCCCCCEEE
Confidence            9999999999999999996 5677788899999999999999 6789999999999999995 56677888999999999


Q ss_pred             EEEcCCCCeEEEEeCCCcEEEEecCccceehcccccccceEEEEEeeCCCEEEEEeCCCcEEEee
Q 021247          249 VDASPDGAAITTGSSDRTVKLWDLNMRAAMQSMTNHTDQVWGVSFRPLGGRVVSVSDDKSISLYE  313 (315)
Q Consensus       249 ~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~i~i~~  313 (315)
                      ++|+|++++|++++.|+.|++||. .++.+.++.+|.+.|++++|+|||++|++++.|++|++||
T Consensus       514 l~~s~dg~~l~s~~~dg~v~lwd~-~~~~~~~~~~h~~~v~~~~fs~dg~~l~s~~~D~~i~~Wd  577 (577)
T 2ymu_A          514 VAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVWGVAFSPDGQTIASASSDKTVKLWN  577 (577)
T ss_dssp             EEECTTSSCEEEEETTSEEEEECT-TSCEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEEC
T ss_pred             EEEcCCCCEEEEEECcCEEEEEeC-CCCEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCEEEEeC
Confidence            999999999999999999999996 4678888999999999999999999999999999999997

>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A

Probab=100.00  E-value=2.5e-46  Score=317.72  Aligned_cols=295  Identities=16%  Similarity=0.237  Sum_probs=249.2

Q ss_pred             hhhhhhccccceEEEEEeecCCCCCcEEEEeeCCCcEEEEcCCCCcceeeccc-----cccceEEEEeCCC----CCEEE
Q 021247            6 LKSVENAHEESVWAVTWVPATETRPALLLTGSLDETVKLWRPDDMQLERTNTG-----HCLGVVSVAAHPS----GIIAA   76 (315)
Q Consensus         6 ~~~~~~~h~~~v~~v~~~~~~~~~~~~l~sgs~d~~v~~w~~~~~~~~~~~~~-----h~~~v~~~~~~~~----g~~l~   76 (315)
                      ...+..+|+++|++++|+|........+++++.++.|++|+..+.+....+..     |...|.+++|+|+    |.+++
T Consensus        10 ~~~~~~~h~~~v~~i~~~p~~~~~~~~~~~~~~~~~v~vw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~   89 (366)
T 3k26_A           10 VNSLKEDHNQPLFGVQFNWHSKEGDPLVFATVGSNRVTLYECHSQGEIRLLQSYVDADADENFYTCAWTYDSNTSHPLLA   89 (366)
T ss_dssp             EEEEECTTCSCEEEEEECTTCCTTSCEEEEEEETTEEEEEEECGGGCEEEEEEEECSCTTCCEEEEEEEECTTTCCEEEE
T ss_pred             EEEeecCCCCceEEEEEecccCCCCceEEEECCCCEEEEEEcCCCcEEEeeeeccccCCCCcEEEEEeccCCCCCCCEEE
Confidence            34566799999999999996433345678888888999999987766555443     5578999999998    67999


Q ss_pred             EeeCCCeEEEEECCCCceeEEeeCCcccEEEEEECC-CCCeEEEEecCCCeEEEEecCCcceeeeecCCCCCCCCCCccC
Q 021247           77 SASLDSFVRVFDVDTNASIATLEASPSEVWQMQFDP-KGTTLAVAGGGSASVKLWDTATWNLIATLSIPRPEGLKPTDKS  155 (315)
Q Consensus        77 s~~~d~~i~~w~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~  155 (315)
                      +++.|+.|++||+.+++.+..+..|...|.+++|+| ++. ++++++.|+.|++||+++++.+..+..          ..
T Consensus        90 ~~~~dg~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~----------~~  158 (366)
T 3k26_A           90 VAGSRGIIRIINPITMQCIKHYVGHGNAINELKFHPRDPN-LLLSVSKDHALRLWNIQTDTLVAIFGG----------VE  158 (366)
T ss_dssp             EEETTCEEEEECTTTCCEEEEEESCCSCEEEEEECSSCTT-EEEEEETTSCEEEEETTTTEEEEEECS----------TT
T ss_pred             EecCCCEEEEEEchhceEeeeecCCCCcEEEEEECCCCCC-EEEEEeCCCeEEEEEeecCeEEEEecc----------cc
Confidence            999999999999999999999999999999999999 555 567888999999999998877766521          12


Q ss_pred             CCCcceEEEEECCCCCEEEEecCCCcEEEEEcccceeeeeec----------------------------CCccceEEEE
Q 021247          156 SSKKFVLSVAWSPDGRRIACGSMDGTISVFDVTRAKFLHHLE----------------------------GHFMPVRSLV  207 (315)
Q Consensus       156 ~~~~~i~~~~~~~~~~~l~~~s~dg~i~i~d~~~~~~~~~~~----------------------------~~~~~v~~~~  207 (315)
                      .+...|.+++|+|++++|++++.||.|++||+++++....+.                            .|...|.++.
T Consensus       159 ~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~  238 (366)
T 3k26_A          159 GHRDEVLSADYDLLGEKIMSCGMDHSLKLWRINSKRMMNAIKESYDYNPNKTNRPFISQKIHFPDFSTRDIHRNYVDCVR  238 (366)
T ss_dssp             SCSSCEEEEEECTTSSEEEEEETTSCEEEEESCSHHHHHHHHHHHTCCGGGCSSCCCCEEECCCSEEECSSCSSCCCEEE
T ss_pred             cccCceeEEEECCCCCEEEEecCCCCEEEEECCCCccccccceeEEecCCCCcccccceeeccCccccccCCcceEEEEE
Confidence            345569999999999999999999999999998776543333                            3889999999


Q ss_pred             EcCCCCcEEEEEeCCCeEEEEeCCCCe--------------eEEEeecccccEEEEEEcCC--CCeEEEEeCCCcEEEEe
Q 021247          208 YSPVDPRVLFSASDDTHVHMYDAEGKS--------------LVTAMSGHASWVLSVDASPD--GAAITTGSSDRTVKLWD  271 (315)
Q Consensus       208 ~~~~~~~~l~s~~~d~~i~~wd~~~~~--------------~~~~~~~~~~~i~~~~~~~~--~~~l~s~~~d~~i~iwd  271 (315)
                      |+   +.++++++.|+.|++||++...              .+..+..|...|.+++|+|+  +++|++|+.||.|++||
T Consensus       239 ~~---~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~dg~i~vwd  315 (366)
T 3k26_A          239 WL---GDLILSKSCENAIVCWKPGKMEDDIDKIKPSESNVTILGRFDYSQCDIWYMRFSMDFWQKMLALGNQVGKLYVWD  315 (366)
T ss_dssp             EE---TTEEEEECSSSEEEEEEESSTTCCGGGCCTTCCCEEEEEEEECSSCCSSCCCCEECTTSSEEEEECTTSCEEEEE
T ss_pred             Ec---CCEEEEEecCCEEEEEeCCCccccccccccCCcchheeccccccCCcEEEEEEcCCCCCcEEEEEecCCcEEEEE
Confidence            98   4599999999999999987653              36777889999999999999  99999999999999999


Q ss_pred             cCccceeh----ccccc--ccceEEEEEeeCCCEEEEEeCCCcEEEeec
Q 021247          272 LNMRAAMQ----SMTNH--TDQVWGVSFRPLGGRVVSVSDDKSISLYEY  314 (315)
Q Consensus       272 ~~~~~~~~----~~~~~--~~~v~~~~~s~~~~~l~s~~~d~~i~i~~~  314 (315)
                      ++.++...    .+..|  ...|++++|+|++++|++++.||.|+|||+
T Consensus       316 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~  364 (366)
T 3k26_A          316 LEVEDPHKAKCTTLTHHKCGAAIRQTSFSRDSSILIAVCDDASIWRWDR  364 (366)
T ss_dssp             CCSSSGGGCEEEEECCTTCCSCEEEEEECTTSSEEEEEETTSEEEEEEC
T ss_pred             CCCCCCccccceEEcccccCCceEEEEeCCCCCeEEEEeCCCEEEEEEe
Confidence            99876443    56666  689999999999999999999999999997

>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}

Probab=100.00  E-value=2.6e-45  Score=309.20  Aligned_cols=249  Identities=23%  Similarity=0.292  Sum_probs=215.3

Q ss_pred             hccccceEEEEEeecCCCCCcEEEEeeCCCcEEEEcCCCCcceee----ccccccceEEEEeCCCCCEEEEeeCCCeEEE
Q 021247           11 NAHEESVWAVTWVPATETRPALLLTGSLDETVKLWRPDDMQLERT----NTGHCLGVVSVAAHPSGIIAASASLDSFVRV   86 (315)
Q Consensus        11 ~~h~~~v~~v~~~~~~~~~~~~l~sgs~d~~v~~w~~~~~~~~~~----~~~h~~~v~~~~~~~~g~~l~s~~~d~~i~~   86 (315)
                      ..|+..|++++|+|+.     .|++|+.||+|++||.++.+....    ..+|...|.+++|+|+|++|++++.|++|++
T Consensus        79 ~~~~~~v~~~~~s~d~-----~l~~~s~dg~v~lWd~~~~~~~~~~~~~~~~H~~~V~~v~~spdg~~l~sgs~d~~i~i  153 (344)
T 4gqb_B           79 VQTEAGVADLTWVGER-----GILVASDSGAVELWELDENETLIVSKFCKYEHDDIVSTVSVLSSGTQAVSGSKDICIKV  153 (344)
T ss_dssp             EEESSCEEEEEEETTT-----EEEEEETTSEEEEEEECTTSSCEEEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEE
T ss_pred             eccCCCEEEEEEeCCC-----eEEEEECCCEEEEEeccCCCceeEeeccccCCCCCEEEEEECCCCCEEEEEeCCCeEEE
Confidence            3466789999999864     589999999999999987765432    4589999999999999999999999999999


Q ss_pred             EECCCCceeEEeeCCcccEEEEEECCCCCeEEEEecCCCeEEEEecCCcceeeeecCCCCCCCCCCccCCCCcceEEEEE
Q 021247           87 FDVDTNASIATLEASPSEVWQMQFDPKGTTLAVAGGGSASVKLWDTATWNLIATLSIPRPEGLKPTDKSSSKKFVLSVAW  166 (315)
Q Consensus        87 w~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~  166 (315)
                      ||+.+++.+..+..|...|.+++|+|++..++++++.|++|++||+++++....+...           .+...+.+++|
T Consensus       154 wd~~~~~~~~~~~~h~~~V~~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~-----------~~~~~~~~~~~  222 (344)
T 4gqb_B          154 WDLAQQVVLSSYRAHAAQVTCVAASPHKDSVFLSCSEDNRILLWDTRCPKPASQIGCS-----------APGYLPTSLAW  222 (344)
T ss_dssp             EETTTTEEEEEECCCSSCEEEEEECSSCTTEEEEEETTSCEEEEETTSSSCEEECC---------------CCCEEEEEE
T ss_pred             EECCCCcEEEEEcCcCCceEEEEecCCCCCceeeeccccccccccccccceeeeeecc-----------eeeccceeeee
Confidence            9999999999999999999999999999878889999999999999988777655322           12334889999


Q ss_pred             CCC-CCEEEEecCCCcEEEEEcccceeeeeecCCccceEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCeeEEEeeccccc
Q 021247          167 SPD-GRRIACGSMDGTISVFDVTRAKFLHHLEGHFMPVRSLVYSPVDPRVLFSASDDTHVHMYDAEGKSLVTAMSGHASW  245 (315)
Q Consensus       167 ~~~-~~~l~~~s~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~  245 (315)
                      +|+ +++|++|+.||.|++||+++++.+..+.+|...|++++|+|++.++|++++.|++|++||.+.+++. .+.+|.+.
T Consensus       223 ~p~~~~~l~sg~~dg~v~~wd~~~~~~~~~~~~h~~~v~~v~fsp~g~~~lasgs~D~~i~vwd~~~~~~~-~~~~H~~~  301 (344)
T 4gqb_B          223 HPQQSEVFVFGDENGTVSLVDTKSTSCVLSSAVHSQCVTGLVFSPHSVPFLASLSEDCSLAVLDSSLSELF-RSQAHRDF  301 (344)
T ss_dssp             CSSCTTEEEEEETTSEEEEEESCC--CCEEEECCSSCEEEEEECSSSSCCEEEEETTSCEEEECTTCCEEE-EECCCSSC
T ss_pred             cCCCCcceEEeccCCcEEEEECCCCcEEEEEcCCCCCEEEEEEccCCCeEEEEEeCCCeEEEEECCCCcEE-EEcCCCCC
Confidence            995 5678999999999999999999999999999999999999976688999999999999999988765 56889999


Q ss_pred             EEEEEEcCCCC-eEEEEeCCCcEEEEecCccc
Q 021247          246 VLSVDASPDGA-AITTGSSDRTVKLWDLNMRA  276 (315)
Q Consensus       246 i~~~~~~~~~~-~l~s~~~d~~i~iwd~~~~~  276 (315)
                      |++++|+|+++ +|++++.|++|++|++.+..
T Consensus       302 V~~v~~sp~~~~llas~s~D~~v~~w~v~~~~  333 (344)
T 4gqb_B          302 VRDATWSPLNHSLLTTVGWDHQVVHHVVPTEP  333 (344)
T ss_dssp             EEEEEECSSSTTEEEEEETTSCEEEEECCC--
T ss_pred             EEEEEEeCCCCeEEEEEcCCCeEEEEECCCCC
Confidence            99999999886 57799999999999998643

>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}

Probab=100.00  E-value=2.3e-44  Score=311.55  Aligned_cols=297  Identities=15%  Similarity=0.216  Sum_probs=253.2

Q ss_pred             ccccceEEEEEeecCCCCCcEEEEeeCCCcEEEEcC----CCCc------ceeeccc----------cccceEEEEeCCC
Q 021247           12 AHEESVWAVTWVPATETRPALLLTGSLDETVKLWRP----DDMQ------LERTNTG----------HCLGVVSVAAHPS   71 (315)
Q Consensus        12 ~h~~~v~~v~~~~~~~~~~~~l~sgs~d~~v~~w~~----~~~~------~~~~~~~----------h~~~v~~~~~~~~   71 (315)
                      .|.++|++++|+|.+.   .+|++|+.||.|++|+.    .+.+      ....+..          |...|.+++|+|+
T Consensus        43 ~~~~~v~~~~~s~~~~---~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~  119 (425)
T 1r5m_A           43 VKLDNIVSSTWNPLDE---SILAYGEKNSVARLARIVETDQEGKKYWKLTIIAELRHPFALSASSGKTTNQVTCLAWSHD  119 (425)
T ss_dssp             EECSCCSEEEECSSCT---TEEEEEETBTEEEEEEEEEC------CEEEEEEEEEECCCCCC------CBCEEEEEECTT
T ss_pred             eccCceEEEEECCCCC---cEEEEecCCceEEEEEEecccCCccccccccccccccccccccccccCCCCceEEEEEcCC
Confidence            4569999999999764   37999999999999999    7666      2222222          6779999999999


Q ss_pred             CCEEEEeeCCCeEEEEECCCCceeEEeeCCcccEEEEEECCCCCeEEEEecCCCeEEEEecCCcceeeeecCCCCCC---
Q 021247           72 GIIAASASLDSFVRVFDVDTNASIATLEASPSEVWQMQFDPKGTTLAVAGGGSASVKLWDTATWNLIATLSIPRPEG---  148 (315)
Q Consensus        72 g~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~---  148 (315)
                      +.+|++++.|+.|++|| .++..+..+..|...|.+++|+|+++.+ ++++.|+.|++||+.+++.+..+..+....   
T Consensus       120 ~~~l~~~~~dg~i~i~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~l-~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~  197 (425)
T 1r5m_A          120 GNSIVTGVENGELRLWN-KTGALLNVLNFHRAPIVSVKWNKDGTHI-ISMDVENVTILWNVISGTVMQHFELKETGGSSI  197 (425)
T ss_dssp             SSEEEEEETTSCEEEEE-TTSCEEEEECCCCSCEEEEEECTTSSEE-EEEETTCCEEEEETTTTEEEEEECCC-------
T ss_pred             CCEEEEEeCCCeEEEEe-CCCCeeeeccCCCccEEEEEECCCCCEE-EEEecCCeEEEEECCCCcEEEEeeccccCccce
Confidence            99999999999999999 6677888888899999999999998865 567889999999999888776654432210   


Q ss_pred             ----------------------------------------CCCCccCCCCcceEEEEECCCCCEEEEecCCCcEEEEEcc
Q 021247          149 ----------------------------------------LKPTDKSSSKKFVLSVAWSPDGRRIACGSMDGTISVFDVT  188 (315)
Q Consensus       149 ----------------------------------------~~~~~~~~~~~~i~~~~~~~~~~~l~~~s~dg~i~i~d~~  188 (315)
                                                              ........+...|.+++|+|++++|++++.|+.|++||++
T Consensus       198 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~  277 (425)
T 1r5m_A          198 NAENHSGDGSLGVDVEWVDDDKFVIPGPKGAIFVYQITEKTPTGKLIGHHGPISVLEFNDTNKLLLSASDDGTLRIWHGG  277 (425)
T ss_dssp             --------CCCBSCCEEEETTEEEEECGGGCEEEEETTCSSCSEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEECSS
T ss_pred             eeccccCCcceeeEEEEcCCCEEEEEcCCCeEEEEEcCCCceeeeeccCCCceEEEEECCCCCEEEEEcCCCEEEEEECC
Confidence                                                    0011122456779999999999999999999999999999


Q ss_pred             cceeeeeecCCccceEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCeeEEEeecccccEEEEEEcCCCCeEEEEeCCCcEE
Q 021247          189 RAKFLHHLEGHFMPVRSLVYSPVDPRVLFSASDDTHVHMYDAEGKSLVTAMSGHASWVLSVDASPDGAAITTGSSDRTVK  268 (315)
Q Consensus       189 ~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~d~~i~  268 (315)
                      +++....+..|...+.++.|+|. + ++++++.|+.|++||++.++.+..+..|...|.+++|+|++++|++++.||.|+
T Consensus       278 ~~~~~~~~~~~~~~i~~~~~~~~-~-~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~  355 (425)
T 1r5m_A          278 NGNSQNCFYGHSQSIVSASWVGD-D-KVISCSMDGSVRLWSLKQNTLLALSIVDGVPIFAGRISQDGQKYAVAFMDGQVN  355 (425)
T ss_dssp             SBSCSEEECCCSSCEEEEEEETT-T-EEEEEETTSEEEEEETTTTEEEEEEECTTCCEEEEEECTTSSEEEEEETTSCEE
T ss_pred             CCccceEecCCCccEEEEEECCC-C-EEEEEeCCCcEEEEECCCCcEeEecccCCccEEEEEEcCCCCEEEEEECCCeEE
Confidence            99988889999999999999994 4 999999999999999999999999999999999999999999999999999999


Q ss_pred             EEecCccc--------------------eehccccccc--ceEEEEEeeCCCEEEEEeCCCcEEEeecC
Q 021247          269 LWDLNMRA--------------------AMQSMTNHTD--QVWGVSFRPLGGRVVSVSDDKSISLYEYS  315 (315)
Q Consensus       269 iwd~~~~~--------------------~~~~~~~~~~--~v~~~~~s~~~~~l~s~~~d~~i~i~~~~  315 (315)
                      +||++.++                    .+..+..|..  .|++++|+|++++|++++.||.|+||++.
T Consensus       356 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~  424 (425)
T 1r5m_A          356 VYDLKKLNSKSRSLYGNRDGILNPLPIPLYASYQSSQDNDYIFDLSWNCAGNKISVAYSLQEGSVVAIP  424 (425)
T ss_dssp             EEECHHHHC--------------CEECCEEEEECCTTCCCCEEEEEECTTSSEEEEEESSSCCEEEECC
T ss_pred             EEECCCCccceeeeecccccccCcccchhhhhhcCcccCCceEEEEccCCCceEEEEecCceEEEEeec
Confidence            99999887                    7888888876  99999999999999999999999999974

>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1

Probab=100.00  E-value=2.7e-44  Score=310.59  Aligned_cols=246  Identities=28%  Similarity=0.439  Sum_probs=228.4

Q ss_pred             eeccccccceEEEEeCCCCCEEEEeeCCCeEEEEECCCCceeEEeeCCcccEEEEEECCCCCeEEEEecCCCeEEEEecC
Q 021247           54 RTNTGHCLGVVSVAAHPSGIIAASASLDSFVRVFDVDTNASIATLEASPSEVWQMQFDPKGTTLAVAGGGSASVKLWDTA  133 (315)
Q Consensus        54 ~~~~~h~~~v~~~~~~~~g~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~~d~~  133 (315)
                      ..+.+|..+|+++.|+|++.++++|+.|++|++||+.+++....+..|...|.+++|+|+++. +++|+.|++|++||+.
T Consensus       102 ~~l~gh~~~V~~~~~~p~~~~l~s~s~Dg~i~vwd~~~~~~~~~l~~h~~~V~~v~~~~~~~~-l~sgs~D~~i~iwd~~  180 (410)
T 1vyh_C          102 YALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKL-LASCSADMTIKLWDFQ  180 (410)
T ss_dssp             CEEECCSSCEEEEEECSSSSEEEEEESSSCEEEEETTTCCCCEEECCCSSCEEEEEECTTSSE-EEEEETTSCCCEEETT
T ss_pred             EeecccCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEEeccCCcEEEEEEcCCCCE-EEEEeCCCeEEEEeCC
Confidence            446789999999999999999999999999999999999999999999999999999999884 5788999999999998


Q ss_pred             CcceeeeecCCCCCCCCCCccCCCCcceEEEEECCCCCEEEEecCCCcEEEEEcccceeeeeecCCccceEEEEEcCCCC
Q 021247          134 TWNLIATLSIPRPEGLKPTDKSSSKKFVLSVAWSPDGRRIACGSMDGTISVFDVTRAKFLHHLEGHFMPVRSLVYSPVDP  213 (315)
Q Consensus       134 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~s~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~  213 (315)
                      +.+.+..+.             .|...|.+++|+|++++|++|+.|+.|++||+++++.+..+.+|...|.++.|+| ++
T Consensus       181 ~~~~~~~~~-------------~h~~~V~~v~~~p~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~-~g  246 (410)
T 1vyh_C          181 GFECIRTMH-------------GHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQ-DG  246 (410)
T ss_dssp             SSCEEECCC-------------CCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECT-TS
T ss_pred             CCceeEEEc-------------CCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEeCCCccEEEEEECC-CC
Confidence            877665542             3455699999999999999999999999999999999999999999999999998 67


Q ss_pred             cEEEEEeCCCeEEEEeCCCCeeEEEeecccccEEEEEEcCC--------------------CCeEEEEeCCCcEEEEecC
Q 021247          214 RVLFSASDDTHVHMYDAEGKSLVTAMSGHASWVLSVDASPD--------------------GAAITTGSSDRTVKLWDLN  273 (315)
Q Consensus       214 ~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~i~~~~~~~~--------------------~~~l~s~~~d~~i~iwd~~  273 (315)
                      .++++++.|+.|++||++.+.....+.+|...|.+++|+|+                    +.+|++|+.|++|++||++
T Consensus       247 ~~l~s~s~D~~v~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~sgs~D~~i~iwd~~  326 (410)
T 1vyh_C          247 TLIASCSNDQTVRVWVVATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVS  326 (410)
T ss_dssp             SEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEEEEETT
T ss_pred             CEEEEEcCCCeEEEEECCCCceeeEecCCCceEEEEEEcCcccccchhhhccccccccCCCCCEEEEEeCCCeEEEEECC
Confidence            89999999999999999999888899999999999999996                    6789999999999999999


Q ss_pred             ccceehcccccccceEEEEEeeCCCEEEEEeCCCcEEEeec
Q 021247          274 MRAAMQSMTNHTDQVWGVSFRPLGGRVVSVSDDKSISLYEY  314 (315)
Q Consensus       274 ~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~i~i~~~  314 (315)
                      ++..+.++.+|...|++++|+|+|++|++++.|++|+|||+
T Consensus       327 ~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~D~~i~vwd~  367 (410)
T 1vyh_C          327 TGMCLMTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDY  367 (410)
T ss_dssp             TTEEEEEEECCSSCEEEEEECSSSSCEEEEETTTEEEEECC
T ss_pred             CCceEEEEECCCCcEEEEEEcCCCCEEEEEeCCCeEEEEEC
Confidence            99999999999999999999999999999999999999996

>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}

Probab=100.00  E-value=9.3e-44  Score=320.07  Aligned_cols=295  Identities=36%  Similarity=0.569  Sum_probs=250.8

Q ss_pred             hhccccceEEEEEeecCCCCCcEEEEeeCCCcEEEEcCCCCcceeeccccccceEEEEeCCCCCEEEEeeCCCeEEEEEC
Q 021247           10 ENAHEESVWAVTWVPATETRPALLLTGSLDETVKLWRPDDMQLERTNTGHCLGVVSVAAHPSGIIAASASLDSFVRVFDV   89 (315)
Q Consensus        10 ~~~h~~~v~~v~~~~~~~~~~~~l~sgs~d~~v~~w~~~~~~~~~~~~~h~~~v~~~~~~~~g~~l~s~~~d~~i~~w~~   89 (315)
                      +.+|++.|++++|+|++.    +|++|+.|++|++||. +.++.+.+.+|..+|.+++|+|+|++|++++.|++|++||.
T Consensus        12 L~GH~~~V~~~a~spdg~----~las~~~d~~v~iWd~-~~~~~~~l~gh~~~V~~l~fspdg~~las~~~d~~i~vWd~   86 (577)
T 2ymu_A           12 LEAHSSSVRGVAFSPDGQ----TIASASDDKTVKLWNR-NGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNR   86 (577)
T ss_dssp             ECCCSSCEEEEEECTTSS----CEEEEETTSEEEEECT-TSCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEET
T ss_pred             ECCCCCcEEEEEECCCCC----EEEEEeCCCEEEEEEC-CCCEEEEEeCCCCCEEEEEECCCCCEEEEEeCCCEEEEEEC
Confidence            679999999999999876    6999999999999995 66778888999999999999999999999999999999996


Q ss_pred             CCCceeEEeeCCcccEEEEEECCCCCeEEEEecCCCeEEEEecCCcceeeeecC----------CCC-------------
Q 021247           90 DTNASIATLEASPSEVWQMQFDPKGTTLAVAGGGSASVKLWDTATWNLIATLSI----------PRP-------------  146 (315)
Q Consensus        90 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~----------~~~-------------  146 (315)
                       +++.+..+..|..+|.+++|+|+++.+ ++++.|+.+++|+............          +..             
T Consensus        87 -~~~~~~~~~~~~~~v~~~~~s~d~~~l-~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~  164 (577)
T 2ymu_A           87 -NGQLLQTLTGHSSSVRGVAFSPDGQTI-ASASDDKTVKLWNRNGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVK  164 (577)
T ss_dssp             -TSCEEEEECCCSSCEEEEEECTTSSEE-EEEETTSCEEEEETTCCEEEEECCCSSCEEEEEECTTSSCEEEEETTSEEE
T ss_pred             -CCCEEEEEECCCCCEEEEEECCCCCEE-EEEcCCCceeecccccceeeeccCCCCceeeeeeecCCccceeccccccee
Confidence             567788899999999999999998865 6788999999999764322111100          000             


Q ss_pred             ----CCCCCCccCCCCcceEEEEECCCCCEEEEecCCCcEEEEEcccceeeeeecCCccceEEEEEcCCCCcEEEEEeCC
Q 021247          147 ----EGLKPTDKSSSKKFVLSVAWSPDGRRIACGSMDGTISVFDVTRAKFLHHLEGHFMPVRSLVYSPVDPRVLFSASDD  222 (315)
Q Consensus       147 ----~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~s~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d  222 (315)
                          ..........+...+..+.++|++++|++++.|+.|++||. +++.+..+.+|...|.+++|+| ++++|++++.|
T Consensus       165 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~~w~~-~~~~~~~~~~~~~~v~~~~~s~-dg~~l~~~~~d  242 (577)
T 2ymu_A          165 LWNRNGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVRGVAFSP-DGQTIASASDD  242 (577)
T ss_dssp             EECTTSCEEEEEECCSSCEEEEEECTTSSCEEEEETTSEEEEECT-TSCEEEEEECCSSCEEEEEECT-TSSCEEEEETT
T ss_pred             ccccceeeeeeccCCCcceeeeeecCCCCEEEEEcCCCEEEEEeC-CCcEEEEEecCCCCEEEEEECC-CCCEEEEEeCC
Confidence                00000111234566889999999999999999999999996 5677788889999999999998 67789999999


Q ss_pred             CeEEEEeCCCCeeEEEeecccccEEEEEEcCCCCeEEEEeCCCcEEEEecCccceehcccccccceEEEEEeeCCCEEEE
Q 021247          223 THVHMYDAEGKSLVTAMSGHASWVLSVDASPDGAAITTGSSDRTVKLWDLNMRAAMQSMTNHTDQVWGVSFRPLGGRVVS  302 (315)
Q Consensus       223 ~~i~~wd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s  302 (315)
                      +.|++||.. ++.+..+.+|...|.+++|+|+++.+++++.|+.|++|+.. ++.+..+.+|...|++++|+|++.+|++
T Consensus       243 ~~i~~w~~~-~~~~~~~~~~~~~v~~v~~~~d~~~l~~~~~d~~i~~w~~~-~~~~~~~~~h~~~v~~~~~~~~~~~l~t  320 (577)
T 2ymu_A          243 KTVKLWNRN-GQLLQTLTGHSSSVNGVAFRPDGQTIASASDDKTVKLWNRN-GQLLQTLTGHSSSVWGVAFSPDGQTIAS  320 (577)
T ss_dssp             SCEEEECTT-SCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETT-SCEEEEECCCSSCEEEEEECTTSSEEEE
T ss_pred             CEEEEEeCC-CCEEEEEecCCCCEEEEEEcCCCCEEEEEeCCCEEEEEeCC-CcEEEEEecCCCCeEEEEECCCCCEEEE
Confidence            999999965 45677788999999999999999999999999999999975 5667778899999999999999999999


Q ss_pred             EeCCCcEEEeecC
Q 021247          303 VSDDKSISLYEYS  315 (315)
Q Consensus       303 ~~~d~~i~i~~~~  315 (315)
                      ++.|++|++|+.+
T Consensus       321 ~~~d~~i~~w~~~  333 (577)
T 2ymu_A          321 ASDDKTVKLWNRN  333 (577)
T ss_dssp             EETTSCEEEEETT
T ss_pred             EeCCCeEEEEeCC
Confidence            9999999999863

>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.3e-45  Score=319.04  Aligned_cols=294  Identities=17%  Similarity=0.281  Sum_probs=251.5

Q ss_pred             hccccceEEEEEeecCCCCCcEEEEeeCCCcEEEEcCCC----CcceeeccccccceEEEEeCCC-CCEEEEeeCCCeEE
Q 021247           11 NAHEESVWAVTWVPATETRPALLLTGSLDETVKLWRPDD----MQLERTNTGHCLGVVSVAAHPS-GIIAASASLDSFVR   85 (315)
Q Consensus        11 ~~h~~~v~~v~~~~~~~~~~~~l~sgs~d~~v~~w~~~~----~~~~~~~~~h~~~v~~~~~~~~-g~~l~s~~~d~~i~   85 (315)
                      ..|...|++++|+|.+.    +|++|+.||.|++|+...    .+....+.+|...|.+++|+|+ +.++++++.|+.|+
T Consensus        64 ~~~~~~v~~~~~s~~~~----~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~  139 (416)
T 2pm9_A           64 LQVDSKFNDLDWSHNNK----IIAGALDNGSLELYSTNEANNAINSMARFSNHSSSVKTVKFNAKQDNVLASGGNNGEIF  139 (416)
T ss_dssp             CCCSSCEEEEEECSSSS----CEEEEESSSCEEEECCSSTTSCCCEEEECCCSSSCCCEEEECSSSTTBEEEECSSSCEE
T ss_pred             EecCCceEEEEECCCCC----eEEEEccCCeEEEeecccccccccchhhccCCccceEEEEEcCCCCCEEEEEcCCCeEE
Confidence            36899999999999765    699999999999999876    3466778899999999999998 89999999999999


Q ss_pred             EEECCCCc------eeEE---eeCCcccEEEEEECCCCCeEEEEecCCCeEEEEecCCcceeeeecCCCCCCCCCCccCC
Q 021247           86 VFDVDTNA------SIAT---LEASPSEVWQMQFDPKGTTLAVAGGGSASVKLWDTATWNLIATLSIPRPEGLKPTDKSS  156 (315)
Q Consensus        86 ~w~~~~~~------~~~~---~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~  156 (315)
                      +||+.+++      ....   ...|...|.+++|+|++..++++++.|+.|++||+++.+.+..+..+...       ..
T Consensus       140 iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~-------~~  212 (416)
T 2pm9_A          140 IWDMNKCTESPSNYTPLTPGQSMSSVDEVISLAWNQSLAHVFASAGSSNFASIWDLKAKKEVIHLSYTSPN-------SG  212 (416)
T ss_dssp             BCBTTTTSSCTTTCCCBCCCCSCCSSCCCCEEEECSSCTTEEEEESSSSCEEEEETTTTEEEEEECCCCCS-------SC
T ss_pred             EEECCCCccccccccccccccccCCCCCeeEEEeCCCCCcEEEEEcCCCCEEEEECCCCCcceEEeccccc-------cc
Confidence            99999876      3222   35677899999999996567788899999999999998887776543211       12


Q ss_pred             CCcceEEEEECCCC-CEEEEecCCC---cEEEEEcccc-eeeeeec-CCccceEEEEEcCCCCcEEEEEeCCCeEEEEeC
Q 021247          157 SKKFVLSVAWSPDG-RRIACGSMDG---TISVFDVTRA-KFLHHLE-GHFMPVRSLVYSPVDPRVLFSASDDTHVHMYDA  230 (315)
Q Consensus       157 ~~~~i~~~~~~~~~-~~l~~~s~dg---~i~i~d~~~~-~~~~~~~-~~~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~  230 (315)
                      +...+.+++|+|++ .+|++++.|+   .|++||++++ +....+. +|...|.+++|+|.++.+|++++.|+.|++||+
T Consensus       213 ~~~~v~~~~~~~~~~~~l~~~~~d~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~s~~~dg~v~~wd~  292 (416)
T 2pm9_A          213 IKQQLSVVEWHPKNSTRVATATGSDNDPSILIWDLRNANTPLQTLNQGHQKGILSLDWCHQDEHLLLSSGRDNTVLLWNP  292 (416)
T ss_dssp             CCCCEEEEEECSSCTTEEEEEECCSSSCCCCEEETTSTTSCSBCCCSCCSSCEEEEEECSSCSSCEEEEESSSEEEEECS
T ss_pred             cCCceEEEEECCCCCCEEEEEECCCCCceEEEEeCCCCCCCcEEeecCccCceeEEEeCCCCCCeEEEEeCCCCEEEeeC
Confidence            34569999999997 6889999998   9999999986 5667777 899999999999977889999999999999999


Q ss_pred             CCCeeEEEeecccccEEEEEEcCCC-CeEEEEeCCCcEEEEecCccceehcccc--------------------------
Q 021247          231 EGKSLVTAMSGHASWVLSVDASPDG-AAITTGSSDRTVKLWDLNMRAAMQSMTN--------------------------  283 (315)
Q Consensus       231 ~~~~~~~~~~~~~~~i~~~~~~~~~-~~l~s~~~d~~i~iwd~~~~~~~~~~~~--------------------------  283 (315)
                      ++++.+..+.+|...|.+++|+|++ .+|++++.|+.|++|++...........                          
T Consensus       293 ~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  372 (416)
T 2pm9_A          293 ESAEQLSQFPARGNWCFKTKFAPEAPDLFACASFDNKIEVQTLQNLTNTLDEQETETKQQESETDFWNNVSREESKEKPS  372 (416)
T ss_dssp             SSCCEEEEEECSSSCCCCEEECTTCTTEEEECCSSSEEEEEESCCCCCSSCC----------------------CCSCCC
T ss_pred             CCCccceeecCCCCceEEEEECCCCCCEEEEEecCCcEEEEEccCCCCCcccccccccccCCcccccccccccccccccc
Confidence            9999999999999999999999998 8999999999999999987654322211                          


Q ss_pred             ---------cccceEEEEEeeCCCEEEEEeCCCcEEEeecC
Q 021247          284 ---------HTDQVWGVSFRPLGGRVVSVSDDKSISLYEYS  315 (315)
Q Consensus       284 ---------~~~~v~~~~~s~~~~~l~s~~~d~~i~i~~~~  315 (315)
                               |..++.+++|+|+|++|++++.|++|+||++.
T Consensus       373 ~~~~~~~~~~~~~~~~~~~s~dg~~la~~~~d~~v~~w~~~  413 (416)
T 2pm9_A          373 VFHLQAPTWYGEPSPAAHWAFGGKLVQITPDGKGVSITNPK  413 (416)
T ss_dssp             SSCCCCCSTTCCCSCCCEEETTTEEECBCTTSSCBCCBCCC
T ss_pred             cccccCCccccCCccceEEeeCCeEEEEeCCCCeEEEEEec
Confidence                     56778899999999999999999999999974

>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A

Probab=100.00  E-value=5.6e-43  Score=293.84  Aligned_cols=281  Identities=19%  Similarity=0.261  Sum_probs=244.0

Q ss_pred             hccccceEEEEEeecCCCCCcEEEEeeCCCcEEEEcCCCCcceeec-----cccccceEEEEeCCCCCEEEEeeCCCeEE
Q 021247           11 NAHEESVWAVTWVPATETRPALLLTGSLDETVKLWRPDDMQLERTN-----TGHCLGVVSVAAHPSGIIAASASLDSFVR   85 (315)
Q Consensus        11 ~~h~~~v~~v~~~~~~~~~~~~l~sgs~d~~v~~w~~~~~~~~~~~-----~~h~~~v~~~~~~~~g~~l~s~~~d~~i~   85 (315)
                      .+|.+.|++++|+|.+.    ++++++ ||.|++|+..+.+.....     .+|...|.++.|+|++.++++++.|+.|+
T Consensus        48 ~~h~~~v~~~~~~~~~~----~l~~~~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~  122 (337)
T 1gxr_A           48 LNHGEVVCAVTISNPTR----HVYTGG-KGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLS  122 (337)
T ss_dssp             ECCSSCCCEEEECSSSS----EEEEEC-BSEEEEEETTSTTCCSCSEEEECSCTTSBEEEEEECTTSSEEEEEESSSEEE
T ss_pred             ccCCCceEEEEEecCCc----EEEEcC-CCeEEEEECCCCCceeeeecccccCCCCcEEEEEEcCCCCEEEEEcCCCcEE
Confidence            47999999999999765    688888 999999998765533222     27889999999999999999999999999


Q ss_pred             EEECCCCc--eeEEeeCCcccEEEEEECCCCCeEEEEecCCCeEEEEecCCcceeeeecCCCCCCCCCCccCCCCcceEE
Q 021247           86 VFDVDTNA--SIATLEASPSEVWQMQFDPKGTTLAVAGGGSASVKLWDTATWNLIATLSIPRPEGLKPTDKSSSKKFVLS  163 (315)
Q Consensus        86 ~w~~~~~~--~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~  163 (315)
                      +||+.+++  ....+..+...+.+++|+|+++.+ ++++.|+.|++||+++++.+..+..             +...+.+
T Consensus       123 ~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l-~~~~~dg~v~~~d~~~~~~~~~~~~-------------~~~~i~~  188 (337)
T 1gxr_A          123 IWDLAAPTPRIKAELTSSAPACYALAISPDSKVC-FSCCSDGNIAVWDLHNQTLVRQFQG-------------HTDGASC  188 (337)
T ss_dssp             EEECCCC--EEEEEEECSSSCEEEEEECTTSSEE-EEEETTSCEEEEETTTTEEEEEECC-------------CSSCEEE
T ss_pred             EEECCCCCcceeeecccCCCceEEEEECCCCCEE-EEEeCCCcEEEEeCCCCceeeeeec-------------ccCceEE
Confidence            99999887  556677888899999999998865 5678899999999998877766532             3445999


Q ss_pred             EEECCCCCEEEEecCCCcEEEEEcccceeeeeecCCccceEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCeeEEEeeccc
Q 021247          164 VAWSPDGRRIACGSMDGTISVFDVTRAKFLHHLEGHFMPVRSLVYSPVDPRVLFSASDDTHVHMYDAEGKSLVTAMSGHA  243 (315)
Q Consensus       164 ~~~~~~~~~l~~~s~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~  243 (315)
                      ++|+|++++|++++.|+.|++||+++++.+..+. +...+.++.|+| +++++++++.|+.|++||.+..+.. .+..|.
T Consensus       189 ~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~-~~~~v~~~~~s~-~~~~l~~~~~~~~i~~~~~~~~~~~-~~~~~~  265 (337)
T 1gxr_A          189 IDISNDGTKLWTGGLDNTVRSWDLREGRQLQQHD-FTSQIFSLGYCP-TGEWLAVGMESSNVEVLHVNKPDKY-QLHLHE  265 (337)
T ss_dssp             EEECTTSSEEEEEETTSEEEEEETTTTEEEEEEE-CSSCEEEEEECT-TSSEEEEEETTSCEEEEETTSSCEE-EECCCS
T ss_pred             EEECCCCCEEEEEecCCcEEEEECCCCceEeeec-CCCceEEEEECC-CCCEEEEEcCCCcEEEEECCCCCeE-EEcCCc
Confidence            9999999999999999999999999988777664 667899999998 6779999999999999999887654 567899


Q ss_pred             ccEEEEEEcCCCCeEEEEeCCCcEEEEecCccceehcccccccceEEEEEeeCCCEEEEEeCCCcEEEeec
Q 021247          244 SWVLSVDASPDGAAITTGSSDRTVKLWDLNMRAAMQSMTNHTDQVWGVSFRPLGGRVVSVSDDKSISLYEY  314 (315)
Q Consensus       244 ~~i~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~i~i~~~  314 (315)
                      ..|.+++|+|++++|++++.||.|++||+..++.+.. ..|...+.+++|+|++++|++++.||.|++|++
T Consensus       266 ~~v~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~~~-~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~  335 (337)
T 1gxr_A          266 SCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQ-SKESSSVLSCDISVDDKYIVTGSGDKKATVYEV  335 (337)
T ss_dssp             SCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEE-EECSSCEEEEEECTTSCEEEEEETTSCEEEEEE
T ss_pred             cceeEEEECCCCCEEEEecCCCcEEEEECCCCeEEEE-ecCCCcEEEEEECCCCCEEEEecCCCeEEEEEE
Confidence            9999999999999999999999999999998877644 457889999999999999999999999999996

>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}

Probab=100.00  E-value=1.1e-44  Score=306.83  Aligned_cols=293  Identities=15%  Similarity=0.272  Sum_probs=241.5

Q ss_pred             hhhccccceEEEEEeecCCCCCcEEEEeeC---CCcEEEEcCCCCcceee-ccccccceEEEEeCCC---CCEEEEeeCC
Q 021247            9 VENAHEESVWAVTWVPATETRPALLLTGSL---DETVKLWRPDDMQLERT-NTGHCLGVVSVAAHPS---GIIAASASLD   81 (315)
Q Consensus         9 ~~~~h~~~v~~v~~~~~~~~~~~~l~sgs~---d~~v~~w~~~~~~~~~~-~~~h~~~v~~~~~~~~---g~~l~s~~~d   81 (315)
                      +..+|.+.|++++|+|.+.   .++++|+.   |+.|++|+..+.+.... ..+|..+|.+++|+|+   |.++++++.|
T Consensus        13 ~~~~h~~~v~~~~~~p~~~---~l~~~~s~~~~d~~v~iw~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~d   89 (357)
T 3i2n_A           13 IQKGFNYTVFDCKWVPCSA---KFVTMGNFARGTGVIQLYEIQHGDLKLLREIEKAKPIKCGTFGATSLQQRYLATGDFG   89 (357)
T ss_dssp             EEEECSSCEEEEEECTTSS---EEEEEEC--CCCEEEEEEEECSSSEEEEEEEEESSCEEEEECTTCCTTTCCEEEEETT
T ss_pred             hccCCCCceEEEEEcCCCc---eEEEecCccCCCcEEEEEeCCCCcccceeeecccCcEEEEEEcCCCCCCceEEEecCC
Confidence            4468999999999999764   36777776   99999999988775443 3478999999999998   7999999999


Q ss_pred             CeEEEEECCCCc-eeEEeeCCcccEEEEEE------CCCCCeEEEEecCCCeEEEEecCCcc-eeeeecCCCCCCCCCCc
Q 021247           82 SFVRVFDVDTNA-SIATLEASPSEVWQMQF------DPKGTTLAVAGGGSASVKLWDTATWN-LIATLSIPRPEGLKPTD  153 (315)
Q Consensus        82 ~~i~~w~~~~~~-~~~~~~~~~~~v~~~~~------~~~~~~~~~~~~~d~~i~~~d~~~~~-~~~~~~~~~~~~~~~~~  153 (315)
                      +.|++||+.+++ .+..+..|...|.+++|      +|+++. +++++.|+.|++||+++.+ .+..+.....       
T Consensus        90 g~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~s~~~~~-l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~-------  161 (357)
T 3i2n_A           90 GNLHIWNLEAPEMPVYSVKGHKEIINAIDGIGGLGIGEGAPE-IVTGSRDGTVKVWDPRQKDDPVANMEPVQG-------  161 (357)
T ss_dssp             SCEEEECTTSCSSCSEEECCCSSCEEEEEEESGGGCC-CCCE-EEEEETTSCEEEECTTSCSSCSEEECCCTT-------
T ss_pred             CeEEEEeCCCCCccEEEEEecccceEEEeeccccccCCCccE-EEEEeCCCeEEEEeCCCCCCcceeccccCC-------
Confidence            999999999988 78888999999999965      677775 4678899999999998865 4444432211       


Q ss_pred             cCCCCcceEEEE----ECCCCCEEEEecCCCcEEEEEcccceeeeeecCCccceEEEEEcCC--CCcEEEEEeCCCeEEE
Q 021247          154 KSSSKKFVLSVA----WSPDGRRIACGSMDGTISVFDVTRAKFLHHLEGHFMPVRSLVYSPV--DPRVLFSASDDTHVHM  227 (315)
Q Consensus       154 ~~~~~~~i~~~~----~~~~~~~l~~~s~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~--~~~~l~s~~~d~~i~~  227 (315)
                        .....+.+++    |+|++++|++++.|+.|++||+++++.... ..|...+.++.|+|.  ++.++++++.|+.|++
T Consensus       162 --~~~~~v~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~i  238 (357)
T 3i2n_A          162 --ENKRDCWTVAFGNAYNQEERVVCAGYDNGDIKLFDLRNMALRWE-TNIKNGVCSLEFDRKDISMNKLVATSLEGKFHV  238 (357)
T ss_dssp             --SCCCCEEEEEEECCCC-CCCEEEEEETTSEEEEEETTTTEEEEE-EECSSCEEEEEESCSSSSCCEEEEEESTTEEEE
T ss_pred             --CCCCceEEEEEEeccCCCCCEEEEEccCCeEEEEECccCceeee-cCCCCceEEEEcCCCCCCCCEEEEECCCCeEEE
Confidence              1123577887    788999999999999999999998886443 567889999999984  5678999999999999


Q ss_pred             EeCCCCeeEEE-----eecccccEEEEEEcCCCC-eEEEEeCCCcEEEEecCcc-------------------ceehccc
Q 021247          228 YDAEGKSLVTA-----MSGHASWVLSVDASPDGA-AITTGSSDRTVKLWDLNMR-------------------AAMQSMT  282 (315)
Q Consensus       228 wd~~~~~~~~~-----~~~~~~~i~~~~~~~~~~-~l~s~~~d~~i~iwd~~~~-------------------~~~~~~~  282 (315)
                      ||++.+.....     +.+|...|.+++|+|+++ +|++++.||.|++||++..                   +.+..+.
T Consensus       239 ~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~  318 (357)
T 3i2n_A          239 FDMRTQHPTKGFASVSEKAHKSTVWQVRHLPQNRELFLTAGGAGGLHLWKYEYPIQRSKKDSEGIEMGVAGSVSLLQNVT  318 (357)
T ss_dssp             EEEEEEETTTEEEEEEEECCSSCEEEEEEETTEEEEEEEEETTSEEEEEEEECCSCC--CCTTSCCCCCCCEEEEEEEEE
T ss_pred             EeCcCCCcccceeeeccCCCcCCEEEEEECCCCCcEEEEEeCCCcEEEeecCCCcccccccCCCCccccccccceeeccc
Confidence            99876654333     348999999999999998 8999999999999999753                   3456677


Q ss_pred             ccccceEEEEEeeCCCEEE-EEeCCCcEEEeecC
Q 021247          283 NHTDQVWGVSFRPLGGRVV-SVSDDKSISLYEYS  315 (315)
Q Consensus       283 ~~~~~v~~~~~s~~~~~l~-s~~~d~~i~i~~~~  315 (315)
                      +|...|++++|+|++++|+ +++.|+.|+||++.
T Consensus       319 ~~~~~v~~~~~s~~~~~l~~s~~~d~~i~iw~~~  352 (357)
T 3i2n_A          319 LSTQPISSLDWSPDKRGLCVCSSFDQTVRVLIVT  352 (357)
T ss_dssp             CCSSCEEEEEECSSSTTEEEEEETTSEEEEEEEC
T ss_pred             cCCCCeeEEEEcCCCCeEEEEecCCCcEEEEECC
Confidence            8999999999999999998 89999999999974

>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*

Probab=100.00  E-value=8e-44  Score=304.91  Aligned_cols=284  Identities=15%  Similarity=0.219  Sum_probs=235.1

Q ss_pred             hhhccccceEEEEEeecCCCCCcEEEEeeCCCcEEEEcCCCCcceeecc--ccccceEEEEeCC-CCCEEEEeeCCCeEE
Q 021247            9 VENAHEESVWAVTWVPATETRPALLLTGSLDETVKLWRPDDMQLERTNT--GHCLGVVSVAAHP-SGIIAASASLDSFVR   85 (315)
Q Consensus         9 ~~~~h~~~v~~v~~~~~~~~~~~~l~sgs~d~~v~~w~~~~~~~~~~~~--~h~~~v~~~~~~~-~g~~l~s~~~d~~i~   85 (315)
                      .+.+|.+.|++++|+|.+.   .+|++|+.||.|++|+..+.+....+.  +|...|.+++|+| ++.++++++.|+.|+
T Consensus        68 ~~~~h~~~v~~~~~~~~~~---~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~  144 (383)
T 3ei3_B           68 TASPFDRRVTSLEWHPTHP---TTVAVGSKGGDIILWDYDVQNKTSFIQGMGPGDAITGMKFNQFNTNQLFVSSIRGATT  144 (383)
T ss_dssp             EECCCSSCEEEEEECSSCT---TEEEEEEBTSCEEEEETTSTTCEEEECCCSTTCBEEEEEEETTEEEEEEEEETTTEEE
T ss_pred             eccCCCCCEEEEEECCCCC---CEEEEEcCCCeEEEEeCCCcccceeeecCCcCCceeEEEeCCCCCCEEEEEeCCCEEE
Confidence            4568999999999999762   389999999999999998777665543  6999999999999 789999999999999


Q ss_pred             EEECCCCceeEEeeCC---cccEEEEEECCCCCeEEEEecCCCeEEEEecCCcceeeeecCCCCCCCCCCccCCCCcceE
Q 021247           86 VFDVDTNASIATLEAS---PSEVWQMQFDPKGTTLAVAGGGSASVKLWDTATWNLIATLSIPRPEGLKPTDKSSSKKFVL  162 (315)
Q Consensus        86 ~w~~~~~~~~~~~~~~---~~~v~~~~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~  162 (315)
                      +||+.+ ..+..+..+   ...+.+++|+|+++.+ ++++.|+.|++||++ ++.+..+.             .|...|.
T Consensus       145 iwd~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~l-~~~~~d~~i~i~d~~-~~~~~~~~-------------~h~~~v~  208 (383)
T 3ei3_B          145 LRDFSG-SVIQVFAKTDSWDYWYCCVDVSVSRQML-ATGDSTGRLLLLGLD-GHEIFKEK-------------LHKAKVT  208 (383)
T ss_dssp             EEETTS-CEEEEEECCCCSSCCEEEEEEETTTTEE-EEEETTSEEEEEETT-SCEEEEEE-------------CSSSCEE
T ss_pred             EEECCC-CceEEEeccCCCCCCeEEEEECCCCCEE-EEECCCCCEEEEECC-CCEEEEec-------------cCCCcEE
Confidence            999986 444555433   3779999999998855 678899999999994 45554443             2445699


Q ss_pred             EEEECCCCC-EEEEecCCCcEEEEEccc----ceeeeeecCCccceEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCeeEE
Q 021247          163 SVAWSPDGR-RIACGSMDGTISVFDVTR----AKFLHHLEGHFMPVRSLVYSPVDPRVLFSASDDTHVHMYDAEGKSLVT  237 (315)
Q Consensus       163 ~~~~~~~~~-~l~~~s~dg~i~i~d~~~----~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~  237 (315)
                      +++|+|+++ +|++++.|+.|++||+++    +..+..+ .|...|.+++|+|.++.+|++++.|+.|++||++.++.+.
T Consensus       209 ~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~-~~~~~v~~~~~s~~~~~~l~~~~~d~~i~iwd~~~~~~~~  287 (383)
T 3ei3_B          209 HAEFNPRCDWLMATSSVDATVKLWDLRNIKDKNSYIAEM-PHEKPVNAAYFNPTDSTKLLTTDQRNEIRVYSSYDWSKPD  287 (383)
T ss_dssp             EEEECSSCTTEEEEEETTSEEEEEEGGGCCSTTCEEEEE-ECSSCEEEEEECTTTSCEEEEEESSSEEEEEETTBTTSCS
T ss_pred             EEEECCCCCCEEEEEeCCCEEEEEeCCCCCcccceEEEe-cCCCceEEEEEcCCCCCEEEEEcCCCcEEEEECCCCcccc
Confidence            999999998 899999999999999987    5555555 6899999999998567899999999999999998776655


Q ss_pred             Eeeccc-----------------ccEEEEEEcCCCCeEEEEeCCCcEEEEecCccceehcccc--cccceEEEEEeeCCC
Q 021247          238 AMSGHA-----------------SWVLSVDASPDGAAITTGSSDRTVKLWDLNMRAAMQSMTN--HTDQVWGVSFRPLGG  298 (315)
Q Consensus       238 ~~~~~~-----------------~~i~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~--~~~~v~~~~~s~~~~  298 (315)
                      .+.+|.                 ..+..++++|++++  +++.|+.|++||+.+++.+.++.+  |...+..++|+|++.
T Consensus       288 ~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~s~dg~~--s~s~d~~i~iwd~~~~~~~~~l~~~~~~~~~~~~~~s~~g~  365 (383)
T 3ei3_B          288 QIIIHPHRQFQHLTPIKATWHPMYDLIVAGRYPDDQL--LLNDKRTIDIYDANSGGLVHQLRDPNAAGIISLNKFSPTGD  365 (383)
T ss_dssp             EEEECCBCCCTTSCCCCCEECSSSSEEEEECBCCTTT--CTTCCCCEEEEETTTCCEEEEECBTTBCSCCCEEEECTTSS
T ss_pred             ccccccccccccccceEEeccCCCCceEEEecCCccc--ccCCCCeEEEEecCCCceeeeecCCCCCceEEEEEEecCcc
Confidence            554432                 33455777777776  888999999999999998888876  456777789999999


Q ss_pred             EEEEEeCCCcEEEeecC
Q 021247          299 RVVSVSDDKSISLYEYS  315 (315)
Q Consensus       299 ~l~s~~~d~~i~i~~~~  315 (315)
                      +|++++ |++|+|||+.
T Consensus       366 ~l~s~s-d~~i~iw~~~  381 (383)
T 3ei3_B          366 VLASGM-GFNILIWNRE  381 (383)
T ss_dssp             EEEEEE-TTEEEEEECC
T ss_pred             EEEEec-CCcEEEEecC
Confidence            999997 9999999974

>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C

Probab=100.00  E-value=6.7e-44  Score=303.72  Aligned_cols=289  Identities=16%  Similarity=0.181  Sum_probs=245.0

Q ss_pred             hhccccceEEEEEeecCCCCCcEEEEeeCCCcEEEEcCCCCc--ceeeccccccceEEEEeCCCCCEEEEeeCCCeEEEE
Q 021247           10 ENAHEESVWAVTWVPATETRPALLLTGSLDETVKLWRPDDMQ--LERTNTGHCLGVVSVAAHPSGIIAASASLDSFVRVF   87 (315)
Q Consensus        10 ~~~h~~~v~~v~~~~~~~~~~~~l~sgs~d~~v~~w~~~~~~--~~~~~~~h~~~v~~~~~~~~g~~l~s~~~d~~i~~w   87 (315)
                      ...|+++|++++|+|+++    +|++|+.|+.|++|+..+.+  ....+.+|...|.+++|+|++.++++++.|+.|++|
T Consensus         4 ~~~~~~~i~~~~~s~~~~----~l~~~~~d~~v~i~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~i~vw   79 (372)
T 1k8k_C            4 HSFLVEPISCHAWNKDRT----QIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVW   79 (372)
T ss_dssp             EESCSSCCCEEEECTTSS----EEEEECSSSEEEEEEEETTEEEEEEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEE
T ss_pred             ecccCCCeEEEEECCCCC----EEEEEeCCCEEEEEeCCCCcEEeeeeecCCCCcccEEEEeCCCCEEEEEcCCCeEEEE
Confidence            346999999999999765    79999999999999998776  677788999999999999999999999999999999


Q ss_pred             ECCCCceeEE--eeCCcccEEEEEECCCCCeEEEEecCCCeEEEEecCCcceeeeecCCCCCCCCCCccCCCCcceEEEE
Q 021247           88 DVDTNASIAT--LEASPSEVWQMQFDPKGTTLAVAGGGSASVKLWDTATWNLIATLSIPRPEGLKPTDKSSSKKFVLSVA  165 (315)
Q Consensus        88 ~~~~~~~~~~--~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~  165 (315)
                      |+.+++....  +..+...+.+++|+|+++.+ ++++.|+.|++||++..+.......         ....+...|.+++
T Consensus        80 d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l-~~~~~d~~v~i~d~~~~~~~~~~~~---------~~~~~~~~i~~~~  149 (372)
T 1k8k_C           80 TLKGRTWKPTLVILRINRAARCVRWAPNEKKF-AVGSGSRVISICYFEQENDWWVCKH---------IKKPIRSTVLSLD  149 (372)
T ss_dssp             EEETTEEEEEEECCCCSSCEEEEEECTTSSEE-EEEETTSSEEEEEEETTTTEEEEEE---------ECTTCCSCEEEEE
T ss_pred             ECCCCeeeeeEEeecCCCceeEEEECCCCCEE-EEEeCCCEEEEEEecCCCcceeeee---------eecccCCCeeEEE
Confidence            9988875443  35678899999999998865 6678899999999987653211110         0123455699999


Q ss_pred             ECCCCCEEEEecCCCcEEEEEc------------------ccceeeeeecCCccceEEEEEcCCCCcEEEEEeCCCeEEE
Q 021247          166 WSPDGRRIACGSMDGTISVFDV------------------TRAKFLHHLEGHFMPVRSLVYSPVDPRVLFSASDDTHVHM  227 (315)
Q Consensus       166 ~~~~~~~l~~~s~dg~i~i~d~------------------~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~~  227 (315)
                      |+|++++|++++.|+.|++||+                  ..++.+..+..|...+.++.|+| ++.+|++++.|+.|++
T Consensus       150 ~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~i~i  228 (372)
T 1k8k_C          150 WHPNSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSA-NGSRVAWVSHDSTVCL  228 (372)
T ss_dssp             ECTTSSEEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECS-SSSEEEEEETTTEEEE
T ss_pred             EcCCCCEEEEEcCCCCEEEEEcccccccccccccccccccchhhheEecCCCCCeEEEEEECC-CCCEEEEEeCCCEEEE
Confidence            9999999999999999999995                  35677888889999999999998 6679999999999999


Q ss_pred             EeCCCCeeEEEeecccccEEEEEEcCCCCeEEEEeCCCcEEEEecCc--cce----------------------e-----
Q 021247          228 YDAEGKSLVTAMSGHASWVLSVDASPDGAAITTGSSDRTVKLWDLNM--RAA----------------------M-----  278 (315)
Q Consensus       228 wd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~d~~i~iwd~~~--~~~----------------------~-----  278 (315)
                      ||++.++.+..+..|...|.+++|+|+++++++| .|+.|++|+++.  +..                      +     
T Consensus       229 ~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  307 (372)
T 1k8k_C          229 ADADKKMAVATLASETLPLLAVTFITESSLVAAG-HDCFPVLFTYDSAAGKLSFGGRLDVPKQSSQRGLTARERFQNLDK  307 (372)
T ss_dssp             EEGGGTTEEEEEECSSCCEEEEEEEETTEEEEEE-TTSSCEEEEEETTTTEEEECCCCCCC--------CHHHHHHHCCC
T ss_pred             EECCCCceeEEEccCCCCeEEEEEecCCCEEEEE-eCCeEEEEEccCcCceEEEeeccCccccchhhhcchhhhhhhccc
Confidence            9999998999999999999999999999988877 999999999977  310                      0     


Q ss_pred             -----------hcc-cccccceEEEEEe-eCC---CEEEEEeCCCcEEEeec
Q 021247          279 -----------QSM-TNHTDQVWGVSFR-PLG---GRVVSVSDDKSISLYEY  314 (315)
Q Consensus       279 -----------~~~-~~~~~~v~~~~~s-~~~---~~l~s~~~d~~i~i~~~  314 (315)
                                 ..+ .+|...|++++|+ ++|   .+|++++.||+|+||++
T Consensus       308 ~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~g~~~~~l~s~~~Dg~i~~W~~  359 (372)
T 1k8k_C          308 KASSEGSAAAGAGLDSLHKNSVSQISVLSGGKAKCSQFCTTGMDGGMSIWDV  359 (372)
T ss_dssp             CC---------CCCSSSSSSCEEEEEEEESTTTSCSEEEEEETTSEEEEEEH
T ss_pred             ccccccCccccccccccccCCcceeEEecCCCcceeeEEEecCCCceEEEEe
Confidence                       222 4899999999966 566   89999999999999996

>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}

Probab=100.00  E-value=9.2e-45  Score=313.65  Aligned_cols=297  Identities=19%  Similarity=0.288  Sum_probs=250.9

Q ss_pred             ccccceEEEEEeecCCCCCcEEEEe----------eCCCcEEEEcCCCCcce--eeccccccceEEEEeCCCCCEEEEee
Q 021247           12 AHEESVWAVTWVPATETRPALLLTG----------SLDETVKLWRPDDMQLE--RTNTGHCLGVVSVAAHPSGIIAASAS   79 (315)
Q Consensus        12 ~h~~~v~~v~~~~~~~~~~~~l~sg----------s~d~~v~~w~~~~~~~~--~~~~~h~~~v~~~~~~~~g~~l~s~~   79 (315)
                      .+...|++++|+|++.   .+|++|          +.|+.|++|+..+.+..  .....|...|.+++|+|++.+|++++
T Consensus        10 ~~~~~v~~~~~sp~g~---~~l~~g~~~g~~~~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~   86 (416)
T 2pm9_A           10 AEFSRTATFAWSHDKI---PLLVSGTVSGTVDANFSTDSSLELWSLLAADSEKPIASLQVDSKFNDLDWSHNNKIIAGAL   86 (416)
T ss_dssp             CEEEESCBCCBCSSSS---CEEEEBCBSSCCCSSCCCCCCCEEEESSSGGGCSCSCCCCCSSCEEEEEECSSSSCEEEEE
T ss_pred             hhhhhcceEeeCCCCC---CEEEEEecCcccccccCCCCeEEEEEccCCCCCcEEEEEecCCceEEEEECCCCCeEEEEc
Confidence            5667899999999764   379999          89999999999876532  22235888999999999999999999


Q ss_pred             CCCeEEEEECCC----CceeEEeeCCcccEEEEEECCCCCeEEEEecCCCeEEEEecCCcceeeeecCCCCCCCCCCccC
Q 021247           80 LDSFVRVFDVDT----NASIATLEASPSEVWQMQFDPKGTTLAVAGGGSASVKLWDTATWNLIATLSIPRPEGLKPTDKS  155 (315)
Q Consensus        80 ~d~~i~~w~~~~----~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~  155 (315)
                      .|+.|++||+..    ...+..+..|...|.+++|+|++..++++++.|++|++||+++.+......    .........
T Consensus        87 ~dg~v~vw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~----~~~~~~~~~  162 (416)
T 2pm9_A           87 DNGSLELYSTNEANNAINSMARFSNHSSSVKTVKFNAKQDNVLASGGNNGEIFIWDMNKCTESPSNY----TPLTPGQSM  162 (416)
T ss_dssp             SSSCEEEECCSSTTSCCCEEEECCCSSSCCCEEEECSSSTTBEEEECSSSCEEBCBTTTTSSCTTTC----CCBCCCCSC
T ss_pred             cCCeEEEeecccccccccchhhccCCccceEEEEEcCCCCCEEEEEcCCCeEEEEECCCCccccccc----ccccccccc
Confidence            999999999987    347778888999999999999844456788999999999998754110000    000011123


Q ss_pred             CCCcceEEEEECCC-CCEEEEecCCCcEEEEEcccceeeeeecCC------ccceEEEEEcCCCCcEEEEEeCCC---eE
Q 021247          156 SSKKFVLSVAWSPD-GRRIACGSMDGTISVFDVTRAKFLHHLEGH------FMPVRSLVYSPVDPRVLFSASDDT---HV  225 (315)
Q Consensus       156 ~~~~~i~~~~~~~~-~~~l~~~s~dg~i~i~d~~~~~~~~~~~~~------~~~v~~~~~~~~~~~~l~s~~~d~---~i  225 (315)
                      .+...|.+++|+|+ +.+|++++.|+.|++||+++++.+..+..+      ...+.+++|+|.+..++++++.|+   .|
T Consensus       163 ~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~~~~i  242 (416)
T 2pm9_A          163 SSVDEVISLAWNQSLAHVFASAGSSNFASIWDLKAKKEVIHLSYTSPNSGIKQQLSVVEWHPKNSTRVATATGSDNDPSI  242 (416)
T ss_dssp             CSSCCCCEEEECSSCTTEEEEESSSSCEEEEETTTTEEEEEECCCCCSSCCCCCEEEEEECSSCTTEEEEEECCSSSCCC
T ss_pred             CCCCCeeEEEeCCCCCcEEEEEcCCCCEEEEECCCCCcceEEeccccccccCCceEEEEECCCCCCEEEEEECCCCCceE
Confidence            45667999999998 789999999999999999999988888766      789999999997778999999998   99


Q ss_pred             EEEeCCCC-eeEEEee-cccccEEEEEEcC-CCCeEEEEeCCCcEEEEecCccceehcccccccceEEEEEeeCC-CEEE
Q 021247          226 HMYDAEGK-SLVTAMS-GHASWVLSVDASP-DGAAITTGSSDRTVKLWDLNMRAAMQSMTNHTDQVWGVSFRPLG-GRVV  301 (315)
Q Consensus       226 ~~wd~~~~-~~~~~~~-~~~~~i~~~~~~~-~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~-~~l~  301 (315)
                      ++||++.. ..+..+. +|...|.+++|+| ++++|++++.|+.|++||+++++.+.++..|...|++++|+|++ .+|+
T Consensus       243 ~~~d~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~s~~~dg~v~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~  322 (416)
T 2pm9_A          243 LIWDLRNANTPLQTLNQGHQKGILSLDWCHQDEHLLLSSGRDNTVLLWNPESAEQLSQFPARGNWCFKTKFAPEAPDLFA  322 (416)
T ss_dssp             CEEETTSTTSCSBCCCSCCSSCEEEEEECSSCSSCEEEEESSSEEEEECSSSCCEEEEEECSSSCCCCEEECTTCTTEEE
T ss_pred             EEEeCCCCCCCcEEeecCccCceeEEEeCCCCCCeEEEEeCCCCEEEeeCCCCccceeecCCCCceEEEEECCCCCCEEE
Confidence            99999875 5666677 8999999999999 89999999999999999999999999999999999999999999 8999


Q ss_pred             EEeCCCcEEEeecC
Q 021247          302 SVSDDKSISLYEYS  315 (315)
Q Consensus       302 s~~~d~~i~i~~~~  315 (315)
                      +++.|++|+||++.
T Consensus       323 s~~~d~~i~iw~~~  336 (416)
T 2pm9_A          323 CASFDNKIEVQTLQ  336 (416)
T ss_dssp             ECCSSSEEEEEESC
T ss_pred             EEecCCcEEEEEcc
Confidence            99999999999973

>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}

Probab=100.00  E-value=2.1e-43  Score=295.11  Aligned_cols=246  Identities=22%  Similarity=0.364  Sum_probs=226.9

Q ss_pred             hhhccccceEEEEEeecCCCCCcEEEEeeCCCcEEEEcCCCCcceeeccccccceEEEEeCCCCCEEEEeeCCCeEEEEE
Q 021247            9 VENAHEESVWAVTWVPATETRPALLLTGSLDETVKLWRPDDMQLERTNTGHCLGVVSVAAHPSGIIAASASLDSFVRVFD   88 (315)
Q Consensus         9 ~~~~h~~~v~~v~~~~~~~~~~~~l~sgs~d~~v~~w~~~~~~~~~~~~~h~~~v~~~~~~~~g~~l~s~~~d~~i~~w~   88 (315)
                      .+.+|...|.+++|+|...    ++++|+.|++|++||..+.+..+.+..|...+.+++|+|++.++++++.|+.|++|+
T Consensus        75 ~l~gh~~~v~~~~~~~~~~----~l~s~s~D~~i~lWd~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~g~~dg~v~i~~  150 (321)
T 3ow8_A           75 SLEGHQLGVVSVDISHTLP----IAASSSLDAHIRLWDLENGKQIKSIDAGPVDAWTLAFSPDSQYLATGTHVGKVNIFG  150 (321)
T ss_dssp             EECCCSSCEEEEEECSSSS----EEEEEETTSEEEEEETTTTEEEEEEECCTTCCCCEEECTTSSEEEEECTTSEEEEEE
T ss_pred             eeccCCCCEEEEEECCCCC----EEEEEeCCCcEEEEECCCCCEEEEEeCCCccEEEEEECCCCCEEEEEcCCCcEEEEE
Confidence            4679999999999998764    799999999999999999888888888888999999999999999999999999999


Q ss_pred             CCCCceeEEeeCCcccEEEEEECCCCCeEEEEecCCCeEEEEecCCcceeeeecCCCCCCCCCCccCCCCcceEEEEECC
Q 021247           89 VDTNASIATLEASPSEVWQMQFDPKGTTLAVAGGGSASVKLWDTATWNLIATLSIPRPEGLKPTDKSSSKKFVLSVAWSP  168 (315)
Q Consensus        89 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~  168 (315)
                      +++++....+..+...+.+++|+|+++++ ++++.|+.|++||+++++.+..+.             .|...|.+++|+|
T Consensus       151 ~~~~~~~~~~~~~~~~v~~~~~spdg~~l-asg~~dg~i~iwd~~~~~~~~~~~-------------~h~~~v~~l~~sp  216 (321)
T 3ow8_A          151 VESGKKEYSLDTRGKFILSIAYSPDGKYL-ASGAIDGIINIFDIATGKLLHTLE-------------GHAMPIRSLTFSP  216 (321)
T ss_dssp             TTTCSEEEEEECSSSCEEEEEECTTSSEE-EEEETTSCEEEEETTTTEEEEEEC-------------CCSSCCCEEEECT
T ss_pred             cCCCceeEEecCCCceEEEEEECCCCCEE-EEEcCCCeEEEEECCCCcEEEEEc-------------ccCCceeEEEEcC
Confidence            99999988888888999999999999865 678899999999999988776663             2344589999999


Q ss_pred             CCCEEEEecCCCcEEEEEcccceeeeeecCCccceEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCeeEEEeecccccEEE
Q 021247          169 DGRRIACGSMDGTISVFDVTRAKFLHHLEGHFMPVRSLVYSPVDPRVLFSASDDTHVHMYDAEGKSLVTAMSGHASWVLS  248 (315)
Q Consensus       169 ~~~~l~~~s~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~i~~  248 (315)
                      ++++|++|+.|+.|++||+++++....+.+|...|.+++|+| ++.+|++++.|+.|++||+++++.+..+.+|...|.+
T Consensus       217 d~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~sp-~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~h~~~v~~  295 (321)
T 3ow8_A          217 DSQLLVTASDDGYIKIYDVQHANLAGTLSGHASWVLNVAFCP-DDTHFVSSSSDKSVKVWDVGTRTCVHTFFDHQDQVWG  295 (321)
T ss_dssp             TSCEEEEECTTSCEEEEETTTCCEEEEECCCSSCEEEEEECT-TSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEE
T ss_pred             CCCEEEEEcCCCeEEEEECCCcceeEEEcCCCCceEEEEECC-CCCEEEEEeCCCcEEEEeCCCCEEEEEEcCCCCcEEE
Confidence            999999999999999999999999999999999999999999 6779999999999999999999999999999999999


Q ss_pred             EEEcCCCCeEEEEeCCCcEEEEecC
Q 021247          249 VDASPDGAAITTGSSDRTVKLWDLN  273 (315)
Q Consensus       249 ~~~~~~~~~l~s~~~d~~i~iwd~~  273 (315)
                      ++|+|++++|++++.|++|++||..
T Consensus       296 v~~s~~g~~l~s~~~d~~i~vwd~p  320 (321)
T 3ow8_A          296 VKYNGNGSKIVSVGDDQEIHIYDCP  320 (321)
T ss_dssp             EEECTTSSEEEEEETTCCEEEEECC
T ss_pred             EEECCCCCEEEEEeCCCeEEEEeCC
Confidence            9999999999999999999999964

>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}

Probab=100.00  E-value=7.7e-44  Score=302.11  Aligned_cols=249  Identities=25%  Similarity=0.326  Sum_probs=211.6

Q ss_pred             hccccceEEEEEeecCCCCCcEEEEeeCCCcEEEEcCCCCccee----eccccccceEEEEeCCCCCEEEEeeCCCeEEE
Q 021247           11 NAHEESVWAVTWVPATETRPALLLTGSLDETVKLWRPDDMQLER----TNTGHCLGVVSVAAHPSGIIAASASLDSFVRV   86 (315)
Q Consensus        11 ~~h~~~v~~v~~~~~~~~~~~~l~sgs~d~~v~~w~~~~~~~~~----~~~~h~~~v~~~~~~~~g~~l~s~~~d~~i~~   86 (315)
                      ..|...|++++|+|+.     .+++++.||+|++||..+.+...    ...+|...|.+++|+|+|.+|++++.|++|++
T Consensus        91 ~~~~~~V~~~~~s~d~-----~~l~~s~dg~v~lWd~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~sgs~dg~v~i  165 (357)
T 4g56_B           91 VQTEAGVTDVAWVSEK-----GILVASDSGAVELWEILEKESLLVNKFAKYEHDDIVKTLSVFSDGTQAVSGGKDFSVKV  165 (357)
T ss_dssp             EECSSCEEEEEEETTT-----EEEEEETTSCEEEC--------CCCCEEECCCSSCEEEEEECSSSSEEEEEETTSCEEE
T ss_pred             CCCCCCEEEEEEcCCC-----CEEEEECCCEEEEeeccccceeEEEeeccCCCCCCEEEEEECCCCCEEEEEeCCCeEEE
Confidence            4789999999999965     37889999999999987665332    34579999999999999999999999999999


Q ss_pred             EECCCCceeEEeeCCcccEEEEEECCCCCeEEEEecCCCeEEEEecCCcceeeeecCCCCCCCCCCccCCCCcceEEEEE
Q 021247           87 FDVDTNASIATLEASPSEVWQMQFDPKGTTLAVAGGGSASVKLWDTATWNLIATLSIPRPEGLKPTDKSSSKKFVLSVAW  166 (315)
Q Consensus        87 w~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~  166 (315)
                      ||+++++.+..+..|...|.+++|+|++..++++++.|++|++||+++++....+..           ..+...+.+++|
T Consensus       166 wd~~~~~~~~~~~~h~~~v~~v~~s~~~~~~~~s~~~dg~v~~wd~~~~~~~~~~~~-----------~~~~~~v~~v~~  234 (357)
T 4g56_B          166 WDLSQKAVLKSYNAHSSEVNCVAACPGKDTIFLSCGEDGRILLWDTRKPKPATRIDF-----------CASDTIPTSVTW  234 (357)
T ss_dssp             EETTTTEEEEEECCCSSCEEEEEECTTCSSCEEEEETTSCEEECCTTSSSCBCBCCC-----------TTCCSCEEEEEE
T ss_pred             EECCCCcEEEEEcCCCCCEEEEEEccCCCceeeeeccCCceEEEECCCCceeeeeee-----------ccccccccchhh
Confidence            999999999999999999999999999877778899999999999988765543322           123445899999


Q ss_pred             CCC-CCEEEEecCCCcEEEEEcccceeeeeecCCccceEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCeeEEEeeccccc
Q 021247          167 SPD-GRRIACGSMDGTISVFDVTRAKFLHHLEGHFMPVRSLVYSPVDPRVLFSASDDTHVHMYDAEGKSLVTAMSGHASW  245 (315)
Q Consensus       167 ~~~-~~~l~~~s~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~  245 (315)
                      +|+ +.+|++|+.|+.|++||+++++.+..+.+|...|++++|+|++.++|++++.|++|++||.++++++.. .+|.+.
T Consensus       235 sp~~~~~la~g~~d~~i~~wd~~~~~~~~~~~~~~~~v~~l~~sp~~~~~lasgs~D~~i~iwd~~~~~~~~~-~~H~~~  313 (357)
T 4g56_B          235 HPEKDDTFACGDETGNVSLVNIKNPDSAQTSAVHSQNITGLAYSYHSSPFLASISEDCTVAVLDADFSEVFRD-LSHRDF  313 (357)
T ss_dssp             CTTSTTEEEEEESSSCEEEEESSCGGGCEEECCCSSCEEEEEECSSSSCCEEEEETTSCEEEECTTSCEEEEE-CCCSSC
T ss_pred             hhcccceEEEeecccceeEEECCCCcEeEEEeccceeEEEEEEcCCCCCEEEEEeCCCEEEEEECCCCcEeEE-CCCCCC
Confidence            997 467889999999999999999999999999999999999997778999999999999999998877655 479999


Q ss_pred             EEEEEEcC-CCCeEEEEeCCCcEEEEecCccc
Q 021247          246 VLSVDASP-DGAAITTGSSDRTVKLWDLNMRA  276 (315)
Q Consensus       246 i~~~~~~~-~~~~l~s~~~d~~i~iwd~~~~~  276 (315)
                      |++++|+| ++.+|+|++.|++|++|++....
T Consensus       314 V~~vafsP~d~~~l~s~s~Dg~v~iW~~~~~~  345 (357)
T 4g56_B          314 VTGVAWSPLDHSKFTTVGWDHKVLHHHLPSEG  345 (357)
T ss_dssp             EEEEEECSSSTTEEEEEETTSCEEEEECC---
T ss_pred             EEEEEEeCCCCCEEEEEcCCCeEEEEECCCCC
Confidence            99999999 78999999999999999997643

>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}

Probab=100.00  E-value=7.3e-43  Score=290.26  Aligned_cols=282  Identities=21%  Similarity=0.319  Sum_probs=244.5

Q ss_pred             chhhhhhccccceEEEEEeecCCCCCcEEEEeeCCCcEEEEcCCCCcceeeccccccceEEEEeCCCCCEEEEeeCCCeE
Q 021247            5 GLKSVENAHEESVWAVTWVPATETRPALLLTGSLDETVKLWRPDDMQLERTNTGHCLGVVSVAAHPSGIIAASASLDSFV   84 (315)
Q Consensus         5 ~~~~~~~~h~~~v~~v~~~~~~~~~~~~l~sgs~d~~v~~w~~~~~~~~~~~~~h~~~v~~~~~~~~g~~l~s~~~d~~i   84 (315)
                      ++...+.+|.+.|++++| |.+.    +|++|+.||.|++|+..+.+....+..|...|.+++|+|++.++++++.|+.+
T Consensus         9 ~~~~~l~~h~~~v~~~~~-~~~~----~l~s~~~dg~v~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i   83 (313)
T 3odt_A            9 QLSATLKGHDQDVRDVVA-VDDS----KVASVSRDGTVRLWSKDDQWLGTVVYTGQGFLNSVCYDSEKELLLFGGKDTMI   83 (313)
T ss_dssp             EEEEEECCCSSCEEEEEE-EETT----EEEEEETTSEEEEEEESSSEEEEEEEECSSCEEEEEEETTTTEEEEEETTSCE
T ss_pred             HHHHHhhCCCCCcEEEEe-cCCC----EEEEEEcCCcEEEEECCCCEEEEEeecCCccEEEEEECCCCCEEEEecCCCeE
Confidence            344567899999999999 7654    69999999999999998888888888899999999999999999999999999


Q ss_pred             EEEECCCC---ceeEEeeCCcccEEEEEECCCCCeEEEEecCCCeEEEEecCCcceeeeecCCCCCCCCCCccCCCCcce
Q 021247           85 RVFDVDTN---ASIATLEASPSEVWQMQFDPKGTTLAVAGGGSASVKLWDTATWNLIATLSIPRPEGLKPTDKSSSKKFV  161 (315)
Q Consensus        85 ~~w~~~~~---~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i  161 (315)
                      ++|++...   +.+..+..|...|.+++|+  ++ ++++++.|+.|++||  ..+....+.             .+...+
T Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--~~-~l~~~~~d~~i~~~d--~~~~~~~~~-------------~~~~~v  145 (313)
T 3odt_A           84 NGVPLFATSGEDPLYTLIGHQGNVCSLSFQ--DG-VVISGSWDKTAKVWK--EGSLVYNLQ-------------AHNASV  145 (313)
T ss_dssp             EEEETTCCTTSCC-CEECCCSSCEEEEEEE--TT-EEEEEETTSEEEEEE--TTEEEEEEE-------------CCSSCE
T ss_pred             EEEEeeecCCCCcccchhhcccCEEEEEec--CC-EEEEEeCCCCEEEEc--CCcEEEecc-------------cCCCce
Confidence            99998765   4566778889999999994  34 567888999999999  334444442             234458


Q ss_pred             EEEEECC-CCCEEEEecCCCcEEEEEcccceeeeeecC-CccceEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCeeEEEe
Q 021247          162 LSVAWSP-DGRRIACGSMDGTISVFDVTRAKFLHHLEG-HFMPVRSLVYSPVDPRVLFSASDDTHVHMYDAEGKSLVTAM  239 (315)
Q Consensus       162 ~~~~~~~-~~~~l~~~s~dg~i~i~d~~~~~~~~~~~~-~~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~  239 (315)
                      .+++|.| +++++++++.|+.|++||  ..+....+.. |...+.+++|+| ++. +++++.|+.|++||.+.++.+..+
T Consensus       146 ~~~~~~~~~~~~l~~~~~d~~i~i~d--~~~~~~~~~~~~~~~i~~~~~~~-~~~-~~~~~~dg~i~i~d~~~~~~~~~~  221 (313)
T 3odt_A          146 WDAKVVSFSENKFLTASADKTIKLWQ--NDKVIKTFSGIHNDVVRHLAVVD-DGH-FISCSNDGLIKLVDMHTGDVLRTY  221 (313)
T ss_dssp             EEEEEEETTTTEEEEEETTSCEEEEE--TTEEEEEECSSCSSCEEEEEEEE-TTE-EEEEETTSEEEEEETTTCCEEEEE
T ss_pred             eEEEEccCCCCEEEEEECCCCEEEEe--cCceEEEEeccCcccEEEEEEcC-CCe-EEEccCCCeEEEEECCchhhhhhh
Confidence            8999988 899999999999999999  4455666666 889999999998 444 999999999999999999999999


Q ss_pred             ecccccEEEEEEcCCCCeEEEEeCCCcEEEEecCccceehcccccccceEEEEEeeCCCEEEEEeCCCcEEEeecC
Q 021247          240 SGHASWVLSVDASPDGAAITTGSSDRTVKLWDLNMRAAMQSMTNHTDQVWGVSFRPLGGRVVSVSDDKSISLYEYS  315 (315)
Q Consensus       240 ~~~~~~i~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~i~i~~~~  315 (315)
                      .+|...|.+++|+|++ .|++++.|+.|++||+++++....+..|...|++++|+|++. +++++.||.|++|++.
T Consensus       222 ~~~~~~i~~~~~~~~~-~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~dg~i~iw~~~  295 (313)
T 3odt_A          222 EGHESFVYCIKLLPNG-DIVSCGEDRTVRIWSKENGSLKQVITLPAISIWSVDCMSNGD-IIVGSSDNLVRIFSQE  295 (313)
T ss_dssp             ECCSSCEEEEEECTTS-CEEEEETTSEEEEECTTTCCEEEEEECSSSCEEEEEECTTSC-EEEEETTSCEEEEESC
T ss_pred             hcCCceEEEEEEecCC-CEEEEecCCEEEEEECCCCceeEEEeccCceEEEEEEccCCC-EEEEeCCCcEEEEeCC
Confidence            9999999999999999 589999999999999999999999999999999999999997 7789999999999973

>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A

Probab=100.00  E-value=1.9e-43  Score=300.49  Aligned_cols=279  Identities=15%  Similarity=0.160  Sum_probs=217.7

Q ss_pred             ccceEEEEEeecCCCCCcEEEEeeCCC-------cEEEEcCCCCcce----------eeccccccceEEEEeCCCCCEEE
Q 021247           14 EESVWAVTWVPATETRPALLLTGSLDE-------TVKLWRPDDMQLE----------RTNTGHCLGVVSVAAHPSGIIAA   76 (315)
Q Consensus        14 ~~~v~~v~~~~~~~~~~~~l~sgs~d~-------~v~~w~~~~~~~~----------~~~~~h~~~v~~~~~~~~g~~l~   76 (315)
                      .-+|++++|+|++.    +|++||.|.       .|++|+.+.....          ..+.+|...+.+++++  +..++
T Consensus        14 g~PV~sv~fs~dg~----~l~sGGg~~~~sGi~N~i~~w~~~~~~~~~~~~~~~~~~~~l~~~~~~v~s~~~~--~~~~~   87 (365)
T 4h5i_A           14 GYPAYGAKFLNNDT----LLVAGGGGEGNNGIPNKLTVLRVDPTKDTEKEQFHILSEFALEDNDDSPTAIDAS--KGIIL   87 (365)
T ss_dssp             SSCEEEEEEEETTE----EEEEEECCSSSSSCCEEEEEEEECTTSSSHHHHEEEEEEEECCTTSCCCCEEEEE--TTEEE
T ss_pred             CCCEEEEEEeCCCc----EEEEECCCccccCCCCEEEEEEEcCCCcceeeeeeeeeEEEccCCCCceEEEEeC--CCEEE
Confidence            44899999999875    789987644       5999987644321          1345677788887764  34444


Q ss_pred             E-----------eeCCCeEEEEECCCCcee-E---Eee-----CCcccEEEEEECCCCCeEEE-EecCCCeEEEEecCCc
Q 021247           77 S-----------ASLDSFVRVFDVDTNASI-A---TLE-----ASPSEVWQMQFDPKGTTLAV-AGGGSASVKLWDTATW  135 (315)
Q Consensus        77 s-----------~~~d~~i~~w~~~~~~~~-~---~~~-----~~~~~v~~~~~~~~~~~~~~-~~~~d~~i~~~d~~~~  135 (315)
                      +           ++.|+.+|+|++...... .   ...     .+...+..++|+|+|+++++ +++.|++|++||++++
T Consensus        88 ~g~~~~~~~l~s~~~d~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~fSpDg~~la~as~~~d~~i~iwd~~~~  167 (365)
T 4h5i_A           88 VGCNENSTKITQGKGNKHLRKFKYDKVNDQLEFLTSVDFDASTNADDYTKLVYISREGTVAAIASSKVPAIMRIIDPSDL  167 (365)
T ss_dssp             EECCCCHHHHHHTSCCCCEEEEEEETTTTEEEEEEEECSSCCCCTTCCEEEEEECTTSSCEEEEESCSSCEEEEEETTTT
T ss_pred             EEECCCccEEEEecCCCcEEEEEecCCCceEEEeeeeceeecCCcccCEEEEEEcCCCCEEEEEECCCCCEEEEeECCCC
Confidence            4           456888999998765422 1   111     12345889999999998764 4557899999999998


Q ss_pred             ceeeeecCCCCCCCCCCccCCCCcceEEEEECCCCCEEEEecCCCcEEEEEcccceeee--eecCCccceEEEEEcCCCC
Q 021247          136 NLIATLSIPRPEGLKPTDKSSSKKFVLSVAWSPDGRRIACGSMDGTISVFDVTRAKFLH--HLEGHFMPVRSLVYSPVDP  213 (315)
Q Consensus       136 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~s~dg~i~i~d~~~~~~~~--~~~~~~~~v~~~~~~~~~~  213 (315)
                      +.+..+.              +...|.+++|+|+|++|++++.+ .+.+|+..+++...  ....|...+++++|+| ++
T Consensus       168 ~~~~~~~--------------~~~~V~~v~fspdg~~l~s~s~~-~~~~~~~~~~~~~~~~~~~~~~~~v~~v~fsp-dg  231 (365)
T 4h5i_A          168 TEKFEIE--------------TRGEVKDLHFSTDGKVVAYITGS-SLEVISTVTGSCIARKTDFDKNWSLSKINFIA-DD  231 (365)
T ss_dssp             EEEEEEE--------------CSSCCCEEEECTTSSEEEEECSS-CEEEEETTTCCEEEEECCCCTTEEEEEEEEEE-TT
T ss_pred             cEEEEeC--------------CCCceEEEEEccCCceEEeccce-eEEEEEeccCcceeeeecCCCCCCEEEEEEcC-CC
Confidence            8776653              22348899999999999999855 56666666665443  3456888999999999 67


Q ss_pred             cEEEEEeCCC----eEEEEeCCCCee----EEEeecccccEEEEEEcCCCCeEEEEeCCCcEEEEecCccceehc-cccc
Q 021247          214 RVLFSASDDT----HVHMYDAEGKSL----VTAMSGHASWVLSVDASPDGAAITTGSSDRTVKLWDLNMRAAMQS-MTNH  284 (315)
Q Consensus       214 ~~l~s~~~d~----~i~~wd~~~~~~----~~~~~~~~~~i~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~-~~~~  284 (315)
                      .++++++.|+    .+++|+......    ...+.+|...|++++|+|+|++||+|+.|++|+|||+++++++.+ +.+|
T Consensus       232 ~~l~~~s~d~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~Spdg~~lasgs~D~~V~iwd~~~~~~~~~~~~gH  311 (365)
T 4h5i_A          232 TVLIAASLKKGKGIVLTKISIKSGNTSVLRSKQVTNRFKGITSMDVDMKGELAVLASNDNSIALVKLKDLSMSKIFKQAH  311 (365)
T ss_dssp             EEEEEEEESSSCCEEEEEEEEETTEEEEEEEEEEESSCSCEEEEEECTTSCEEEEEETTSCEEEEETTTTEEEEEETTSS
T ss_pred             CEEEEEecCCcceeEEeecccccceecceeeeeecCCCCCeEeEEECCCCCceEEEcCCCEEEEEECCCCcEEEEecCcc
Confidence            7888888776    688899765532    345678999999999999999999999999999999999998877 4789


Q ss_pred             ccceEEEEEeeCCCEEEEEeCCCcEEEeec
Q 021247          285 TDQVWGVSFRPLGGRVVSVSDDKSISLYEY  314 (315)
Q Consensus       285 ~~~v~~~~~s~~~~~l~s~~~d~~i~i~~~  314 (315)
                      ...|++|+|||||++||++|.|++||||++
T Consensus       312 ~~~V~~v~fSpdg~~laS~S~D~tvrvw~i  341 (365)
T 4h5i_A          312 SFAITEVTISPDSTYVASVSAANTIHIIKL  341 (365)
T ss_dssp             SSCEEEEEECTTSCEEEEEETTSEEEEEEC
T ss_pred             cCCEEEEEECCCCCEEEEEeCCCeEEEEEc
Confidence            999999999999999999999999999997

>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A

Probab=100.00  E-value=4.4e-42  Score=297.73  Aligned_cols=276  Identities=22%  Similarity=0.380  Sum_probs=237.2

Q ss_pred             ceEEEEEeecCCCCCcEEEEeeCCCcEEEEcCCCCcceeec--cccccceEEEEeCCCCCEEEEeeCCCeEEEEECCCCc
Q 021247           16 SVWAVTWVPATETRPALLLTGSLDETVKLWRPDDMQLERTN--TGHCLGVVSVAAHPSGIIAASASLDSFVRVFDVDTNA   93 (315)
Q Consensus        16 ~v~~v~~~~~~~~~~~~l~sgs~d~~v~~w~~~~~~~~~~~--~~h~~~v~~~~~~~~g~~l~s~~~d~~i~~w~~~~~~   93 (315)
                      .++.|+|++.     ++|++| .|++|++||..++++.+.+  .+|...|++++|+|+|.+|++|+.|++|++||+.+++
T Consensus       107 y~~~l~wS~~-----n~lAvg-ld~tV~lWd~~tg~~~~~~~~~~~~~~V~sv~fspdg~~lasgs~Dg~v~iWd~~~~~  180 (420)
T 4gga_A          107 YLNLVDWSSG-----NVLAVA-LDNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQK  180 (420)
T ss_dssp             TCBCEEECTT-----SEEEEE-ETTEEEEEETTTCCEEEEEECCSTTCCEEEEEECTTSSEEEEEETTSCEEEEETTTTE
T ss_pred             cceeEEECCC-----CEEEEE-eCCEEEEEECCCCCEEEEEEecCCCCcEEEEEECCCCCEEEEEECCCeEEEEEcCCCc
Confidence            4677999852     256655 5999999999998876654  4678889999999999999999999999999999999


Q ss_pred             eeEEeeCCcccEEEEEECCCCCeEEEEecCCCeEEEEecCCccee-eeecCCCCCCCCCCccCCCCcceEEEEECCCCCE
Q 021247           94 SIATLEASPSEVWQMQFDPKGTTLAVAGGGSASVKLWDTATWNLI-ATLSIPRPEGLKPTDKSSSKKFVLSVAWSPDGRR  172 (315)
Q Consensus        94 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~  172 (315)
                      .+..+..|...+.++++++.   ++++|+.|+.+++||.+..... ..+             ..|...+..+.++|++++
T Consensus       181 ~~~~~~~h~~~v~~~s~~~~---~l~sgs~d~~i~~~d~~~~~~~~~~~-------------~~h~~~~~~~~~~~~g~~  244 (420)
T 4gga_A          181 RLRNMTSHSARVGSLSWNSY---ILSSGSRSGHIHHHDVRVAEHHVATL-------------SGHSQEVCGLRWAPDGRH  244 (420)
T ss_dssp             EEEEECCCSSCEEEEEEETT---EEEEEETTSEEEEEETTSSSCEEEEE-------------ECCSSCEEEEEECTTSSE
T ss_pred             EEEEEeCCCCceEEEeeCCC---EEEEEeCCCceeEeeecccceeeEEe-------------cccccceeeeeecCCCCe
Confidence            99999999999999988653   6788999999999998764332 222             234556899999999999


Q ss_pred             EEEecCCCcEEEEEcccce----eeeeecCCccceEEEEEcCCCCcEEEEE--eCCCeEEEEeCCCCeeEEEeecccccE
Q 021247          173 IACGSMDGTISVFDVTRAK----FLHHLEGHFMPVRSLVYSPVDPRVLFSA--SDDTHVHMYDAEGKSLVTAMSGHASWV  246 (315)
Q Consensus       173 l~~~s~dg~i~i~d~~~~~----~~~~~~~~~~~v~~~~~~~~~~~~l~s~--~~d~~i~~wd~~~~~~~~~~~~~~~~i  246 (315)
                      +++++.|+.+++||..+++    .+.....|...|.+++|+|.+..+++++  +.|++|++||+.++.....+..| ..+
T Consensus       245 l~s~~~D~~v~i~~~~~~~~~~~~~~~~~~~~~~V~~~~~~p~~~~~la~~~gs~D~~I~iwd~~t~~~~~~~~~~-~~v  323 (420)
T 4gga_A          245 LASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAH-SQV  323 (420)
T ss_dssp             EEEEETTSCEEEEESSCCSSCSCCSEEECCCSSCEEEEEECTTCTTEEEEEECTTTCEEEEEETTTTEEEEEEECS-SCE
T ss_pred             eeeeeccccceEEeeccccccceeeeeecccCCceeeeeeCCCcccEEEEEeecCCCEEEEEeCCccccceeeccc-cce
Confidence            9999999999999997664    3456678899999999999888888764  47999999999999888877755 468


Q ss_pred             EEEEEcCCCCeEEEEe--CCCcEEEEecCccceehcccccccceEEEEEeeCCCEEEEEeCCCcEEEeec
Q 021247          247 LSVDASPDGAAITTGS--SDRTVKLWDLNMRAAMQSMTNHTDQVWGVSFRPLGGRVVSVSDDKSISLYEY  314 (315)
Q Consensus       247 ~~~~~~~~~~~l~s~~--~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~i~i~~~  314 (315)
                      .++.|+|+++.+++++  .|+.|++||+.+++++.++.+|.+.|++++|+|+|++|+|+|.|++|+|||+
T Consensus       324 ~~~~~~~~~~~lv~~sg~~d~~I~iwd~~~~~~v~~l~gH~~~V~~l~~spdg~~l~S~s~D~tvriWdv  393 (420)
T 4gga_A          324 CSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAELKGHTSRVLSLTMSPDGATVASAAADETLRLWRC  393 (420)
T ss_dssp             EEEEEETTTTEEEEEECTTTCCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSCEEEEETTTEEEEECC
T ss_pred             eeeeecCCCCeEEEEEecCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEecCCeEEEEEC
Confidence            8899999999887765  7999999999999999999999999999999999999999999999999986

>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}

Probab=100.00  E-value=3e-42  Score=296.99  Aligned_cols=281  Identities=18%  Similarity=0.315  Sum_probs=241.0

Q ss_pred             ccccc--eEEEEEeecCCCCCcEEEEeeCCCcEEEEcCCCCcceeeccc-cccceEEEEeCCCCCEEEEeeCCCeEEEEE
Q 021247           12 AHEES--VWAVTWVPATETRPALLLTGSLDETVKLWRPDDMQLERTNTG-HCLGVVSVAAHPSGIIAASASLDSFVRVFD   88 (315)
Q Consensus        12 ~h~~~--v~~v~~~~~~~~~~~~l~sgs~d~~v~~w~~~~~~~~~~~~~-h~~~v~~~~~~~~g~~l~s~~~d~~i~~w~   88 (315)
                      +|.+.  +.++.|++  .    .+++++.|+.|++|+..+.+....... |...|.+++|+|++.+|++++.||.|++||
T Consensus        89 ~~~~~~~~~~~~~s~--~----~l~~~~~d~~v~lw~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd  162 (401)
T 4aez_A           89 GIIDDYYLNLLDWSN--L----NVVAVALERNVYVWNADSGSVSALAETDESTYVASVKWSHDGSFLSVGLGNGLVDIYD  162 (401)
T ss_dssp             TCCCCTTCBCEEECT--T----SEEEEEETTEEEEEETTTCCEEEEEECCTTCCEEEEEECTTSSEEEEEETTSCEEEEE
T ss_pred             CCcCCceEEEEeecC--C----CEEEEECCCeEEEeeCCCCcEeEeeecCCCCCEEEEEECCCCCEEEEECCCCeEEEEE
Confidence            55554  44466654  2    388899999999999988887666554 888999999999999999999999999999


Q ss_pred             CCCCceeEEeeCCcccEEEEEECCCCCeEEEEecCCCeEEEEecCC-cceeeeecCCCCCCCCCCccCCCCcceEEEEEC
Q 021247           89 VDTNASIATLEASPSEVWQMQFDPKGTTLAVAGGGSASVKLWDTAT-WNLIATLSIPRPEGLKPTDKSSSKKFVLSVAWS  167 (315)
Q Consensus        89 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~~d~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~  167 (315)
                      +.+++.+..+..|...|.+++|++  . ++++++.|+.|++||++. ...+..+.             .|...|.+++|+
T Consensus       163 ~~~~~~~~~~~~~~~~v~~~~~~~--~-~l~~~~~dg~i~i~d~~~~~~~~~~~~-------------~~~~~v~~~~~~  226 (401)
T 4aez_A          163 VESQTKLRTMAGHQARVGCLSWNR--H-VLSSGSRSGAIHHHDVRIANHQIGTLQ-------------GHSSEVCGLAWR  226 (401)
T ss_dssp             TTTCCEEEEECCCSSCEEEEEEET--T-EEEEEETTSEEEEEETTSSSCEEEEEE-------------CCSSCEEEEEEC
T ss_pred             CcCCeEEEEecCCCCceEEEEECC--C-EEEEEcCCCCEEEEecccCcceeeEEc-------------CCCCCeeEEEEc
Confidence            999999999999999999999964  3 667889999999999984 33333332             345569999999


Q ss_pred             CCCCEEEEecCCCcEEEEEcccceeeeeecCCccceEEEEEcCCCCcEEEEEe--CCCeEEEEeCCCCeeEEEeeccccc
Q 021247          168 PDGRRIACGSMDGTISVFDVTRAKFLHHLEGHFMPVRSLVYSPVDPRVLFSAS--DDTHVHMYDAEGKSLVTAMSGHASW  245 (315)
Q Consensus       168 ~~~~~l~~~s~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~--~d~~i~~wd~~~~~~~~~~~~~~~~  245 (315)
                      |++++|++|+.|+.|++||+++++....+..|...|.+++|+|.+..++++++  .|+.|++||+++++.+..+. +...
T Consensus       227 ~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~ll~~~~gs~d~~i~i~d~~~~~~~~~~~-~~~~  305 (401)
T 4aez_A          227 SDGLQLASGGNDNVVQIWDARSSIPKFTKTNHNAAVKAVAWCPWQSNLLATGGGTMDKQIHFWNAATGARVNTVD-AGSQ  305 (401)
T ss_dssp             TTSSEEEEEETTSCEEEEETTCSSEEEEECCCSSCCCEEEECTTSTTEEEEECCTTTCEEEEEETTTCCEEEEEE-CSSC
T ss_pred             CCCCEEEEEeCCCeEEEccCCCCCccEEecCCcceEEEEEECCCCCCEEEEecCCCCCEEEEEECCCCCEEEEEe-CCCc
Confidence            99999999999999999999999988889999999999999998788888876  79999999999988877775 5678


Q ss_pred             EEEEEEcCCCCeEEEE--eCCCcEEEEecCcccee--hcccccccceEEEEEeeCCCEEEEEeCCCcEEEeecC
Q 021247          246 VLSVDASPDGAAITTG--SSDRTVKLWDLNMRAAM--QSMTNHTDQVWGVSFRPLGGRVVSVSDDKSISLYEYS  315 (315)
Q Consensus       246 i~~~~~~~~~~~l~s~--~~d~~i~iwd~~~~~~~--~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~i~i~~~~  315 (315)
                      |.+++|+|+++.++++  +.||.|++||+..+...  ..+.+|...|.+++|+|+|.+|++++.||+|++|++.
T Consensus       306 v~~~~~s~~~~~l~~~~g~~dg~i~v~~~~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~~~dg~i~iw~~~  379 (401)
T 4aez_A          306 VTSLIWSPHSKEIMSTHGFPDNNLSIWSYSSSGLTKQVDIPAHDTRVLYSALSPDGRILSTAASDENLKFWRVY  379 (401)
T ss_dssp             EEEEEECSSSSEEEEEECTTTCEEEEEEEETTEEEEEEEEECCSSCCCEEEECTTSSEEEEECTTSEEEEEECC
T ss_pred             EEEEEECCCCCeEEEEeecCCCcEEEEecCCccceeEEEecCCCCCEEEEEECCCCCEEEEEeCCCcEEEEECC
Confidence            9999999999999984  48999999999885443  3467899999999999999999999999999999973

>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}

Probab=100.00  E-value=9.4e-43  Score=303.36  Aligned_cols=286  Identities=15%  Similarity=0.235  Sum_probs=233.5

Q ss_pred             hccccceEEEEEee-cCCCCCcEEEEeeCCCcEEEEcCCC---Ccce--eeccccccceEEEEeCCCCCEEEEeeCCCeE
Q 021247           11 NAHEESVWAVTWVP-ATETRPALLLTGSLDETVKLWRPDD---MQLE--RTNTGHCLGVVSVAAHPSGIIAASASLDSFV   84 (315)
Q Consensus        11 ~~h~~~v~~v~~~~-~~~~~~~~l~sgs~d~~v~~w~~~~---~~~~--~~~~~h~~~v~~~~~~~~g~~l~s~~~d~~i   84 (315)
                      .+|++.|++++|+| .+.    +|++|+.||+|++|+..+   ....  ....+|..+|.+++|+|++.+|++++.|++|
T Consensus        60 ~~h~~~V~~~~~s~~~~~----~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~i  135 (437)
T 3gre_A           60 ENEPNSITSSAVSPGETP----YLITGSDQGVIKIWNLKEIIVGEVYSSSLTYDCSSTVTQITMIPNFDAFAVSSKDGQI  135 (437)
T ss_dssp             TTTTSCEEEEEEECSSSC----EEEEEETTSEEEEEEHHHHHTTCCCSCSEEEECSSCEEEEEECTTSSEEEEEETTSEE
T ss_pred             cCCCCceEEEEECCCCCC----EEEEecCCceEEEeECcccccCcccceeeeccCCCCEEEEEEeCCCCEEEEEeCCCEE
Confidence            78999999999999 654    799999999999999755   3211  1122589999999999999999999999999


Q ss_pred             EEEECC---CCceeEEeeC------------CcccEEEEE--ECCCCCeEEEEecCCCeEEEEecCCcceeeeecCCCCC
Q 021247           85 RVFDVD---TNASIATLEA------------SPSEVWQMQ--FDPKGTTLAVAGGGSASVKLWDTATWNLIATLSIPRPE  147 (315)
Q Consensus        85 ~~w~~~---~~~~~~~~~~------------~~~~v~~~~--~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~  147 (315)
                      ++||+.   .++.......            +...+.++.  ++|++. ++++++.|+.|++||+++++.+..+..+   
T Consensus       136 ~vwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~~~~~d~~i~iwd~~~~~~~~~~~~~---  211 (437)
T 3gre_A          136 IVLKVNHYQQESEVKFLNCECIRKINLKNFGKNEYAVRMRAFVNEEKS-LLVALTNLSRVIIFDIRTLERLQIIENS---  211 (437)
T ss_dssp             EEEEEEEEEETTEEEEEEEEEEEEEEGGGGSSCCCEEEEEEEECSSCE-EEEEEETTSEEEEEETTTCCEEEEEECC---
T ss_pred             EEEEeccccCCceeeccccceeEEEEccCcccccCceEEEEEEcCCCC-EEEEEeCCCeEEEEeCCCCeeeEEEccC---
Confidence            999995   4544433322            233455555  445555 5578889999999999998887776432   


Q ss_pred             CCCCCccCCCCcceEEEEECCCCCEEEEecCCCcEEEEEcccceeeeeec-CCccceEEEEEcCC---CCcEEEEEeCCC
Q 021247          148 GLKPTDKSSSKKFVLSVAWSPDGRRIACGSMDGTISVFDVTRAKFLHHLE-GHFMPVRSLVYSPV---DPRVLFSASDDT  223 (315)
Q Consensus       148 ~~~~~~~~~~~~~i~~~~~~~~~~~l~~~s~dg~i~i~d~~~~~~~~~~~-~~~~~v~~~~~~~~---~~~~l~s~~~d~  223 (315)
                              .|...|.+++|+|++++|++|+.||.|++||+++++.+..+. .|..+|.++.|+|.   ++.++++++.|+
T Consensus       212 --------~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~s~~~~~l~s~~~dg  283 (437)
T 3gre_A          212 --------PRHGAVSSICIDEECCVLILGTTRGIIDIWDIRFNVLIRSWSFGDHAPITHVEVCQFYGKNSVIVVGGSSKT  283 (437)
T ss_dssp             --------GGGCCEEEEEECTTSCEEEEEETTSCEEEEETTTTEEEEEEBCTTCEEEEEEEECTTTCTTEEEEEEESTTE
T ss_pred             --------CCCCceEEEEECCCCCEEEEEcCCCeEEEEEcCCccEEEEEecCCCCceEEEEeccccCCCccEEEEEcCCC
Confidence                    134469999999999999999999999999999999888876 78889999988763   567999999999


Q ss_pred             eEEEEeCCCCeeEEEeec--------------------------ccccEEEEEEcCCCCeEEEEeCCCcEEEEecCccce
Q 021247          224 HVHMYDAEGKSLVTAMSG--------------------------HASWVLSVDASPDGAAITTGSSDRTVKLWDLNMRAA  277 (315)
Q Consensus       224 ~i~~wd~~~~~~~~~~~~--------------------------~~~~i~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~  277 (315)
                      .|++||+++++.+..+.+                          |...|.+++|+ ++++|++|+.|+.|++||+..++.
T Consensus       284 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~~-~~~~l~s~~~d~~i~~wd~~~~~~  362 (437)
T 3gre_A          284 FLTIWNFVKGHCQYAFINSDEQPSMEHFLPIEKGLEELNFCGIRSLNALSTISVS-NDKILLTDEATSSIVMFSLNELSS  362 (437)
T ss_dssp             EEEEEETTTTEEEEEEESSSSCCCGGGGSCBCSSGGGCCCCCCCSGGGGCCEEEE-TTEEEEEEGGGTEEEEEETTCGGG
T ss_pred             cEEEEEcCCCcEEEEEEcCCCCCccceecccccccccceecccccCCceEEEEEC-CceEEEecCCCCeEEEEECCCccc
Confidence            999999998887766653                          55568888998 678999999999999999998876


Q ss_pred             ehcccc-------------------------------------cccceEEEEEeeC--CCEEEEEeCCCcEEEee
Q 021247          278 MQSMTN-------------------------------------HTDQVWGVSFRPL--GGRVVSVSDDKSISLYE  313 (315)
Q Consensus       278 ~~~~~~-------------------------------------~~~~v~~~~~s~~--~~~l~s~~~d~~i~i~~  313 (315)
                      ...+.+                                     |.+.|++++|+++  +.+|++++.||.|+||+
T Consensus       363 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~i~~~~~~~~~~l~s~~~dG~I~iw~  437 (437)
T 3gre_A          363 SKAVISPSRFSDVFIPTQVTANLTMLLRKMKRTSTHSVDDSLYHHDIINSISTCEVDETPLLVACDNSGLIGIFQ  437 (437)
T ss_dssp             CEEEECC--CCCEEEEEEEETTEEEEEEECC-------------CCCEEEEEEEESSSSEEEEEEETTSCEEEEC
T ss_pred             ceEEecccccCceEEEEEeecceEEEEEecccccccccCcccccccceeeEeeeccCCceEEEEEcCCceEEEeC
Confidence            655544                                     8899999999998  77999999999999995

>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}

Probab=100.00  E-value=3.2e-44  Score=306.58  Aligned_cols=285  Identities=16%  Similarity=0.153  Sum_probs=227.2

Q ss_pred             hhccccceEEEEEeecCCCCCcEEEEeeCCCcEEEEcCCCC--cceeeccccccceEEEEeCCCCCEEEEeeCCCeEEEE
Q 021247           10 ENAHEESVWAVTWVPATETRPALLLTGSLDETVKLWRPDDM--QLERTNTGHCLGVVSVAAHPSGIIAASASLDSFVRVF   87 (315)
Q Consensus        10 ~~~h~~~v~~v~~~~~~~~~~~~l~sgs~d~~v~~w~~~~~--~~~~~~~~h~~~v~~~~~~~~g~~l~s~~~d~~i~~w   87 (315)
                      ...|.++|++++|+|+++    +|++|+.|+.|++|+..+.  +....+.+|..+|.+++|+|++.+|++++.|++|++|
T Consensus         7 ~~~~~~~v~~~~~s~~g~----~l~~~~~d~~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~d~~v~vw   82 (377)
T 3dwl_C            7 LHILPKPSYEHAFNSQRT----EFVTTTATNQVELYEQDGNGWKHARTFSDHDKIVTCVDWAPKSNRIVTCSQDRNAYVY   82 (377)
T ss_dssp             EEECSSCCSCCEECSSSS----EEECCCSSSCBCEEEEETTEEEECCCBCCCSSCEEEEEECTTTCCEEEEETTSSEEEC
T ss_pred             EecCCCcEEEEEECCCCC----EEEEecCCCEEEEEEccCCceEEEEEEecCCceEEEEEEeCCCCEEEEEeCCCeEEEE
Confidence            345778999999999765    7999999999999999877  6777788999999999999999999999999999999


Q ss_pred             ECCCCc---eeEEeeCCcccEEEEEECCCCCeEEEEecCCCeEEEEecCCcce---eeeecCCCCCCCCCCccCCCCcce
Q 021247           88 DVDTNA---SIATLEASPSEVWQMQFDPKGTTLAVAGGGSASVKLWDTATWNL---IATLSIPRPEGLKPTDKSSSKKFV  161 (315)
Q Consensus        88 ~~~~~~---~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~~d~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~i  161 (315)
                      |+.++.   ....+..|...|.+++|+|+++.+ ++++.|+.|++||+++.+.   ...+.            ..|...|
T Consensus        83 d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l-~~~~~d~~i~iwd~~~~~~~~~~~~~~------------~~h~~~v  149 (377)
T 3dwl_C           83 EKRPDGTWKQTLVLLRLNRAATFVRWSPNEDKF-AVGSGARVISVCYFEQENDWWVSKHLK------------RPLRSTI  149 (377)
T ss_dssp             ------CCCCEEECCCCSSCEEEEECCTTSSCC-EEEESSSCEEECCC-----CCCCEEEC------------SSCCSCE
T ss_pred             EcCCCCceeeeeEecccCCceEEEEECCCCCEE-EEEecCCeEEEEEECCcccceeeeEee------------cccCCCe
Confidence            999877   566777889999999999998865 5778899999999987652   22221            1155679


Q ss_pred             EEEEECCCCCEEEEecCCCcEEEEEcc------------------cceeeeeecCCccceEEEEEcCCCCcEEEEEeCCC
Q 021247          162 LSVAWSPDGRRIACGSMDGTISVFDVT------------------RAKFLHHLEGHFMPVRSLVYSPVDPRVLFSASDDT  223 (315)
Q Consensus       162 ~~~~~~~~~~~l~~~s~dg~i~i~d~~------------------~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~  223 (315)
                      .+++|+|++++|++++.|+.|++||+.                  .++.+..+ +|...|.+++|+| ++++|++++.|+
T Consensus       150 ~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~sp-~~~~l~~~~~d~  227 (377)
T 3dwl_C          150 LSLDWHPNNVLLAAGCADRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEY-PSGGWVHAVGFSP-SGNALAYAGHDS  227 (377)
T ss_dssp             EEEEECTTSSEEEEEESSSCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECC-CCSSSEEEEEECT-TSSCEEEEETTT
T ss_pred             EEEEEcCCCCEEEEEeCCCEEEEEEEEecccCCCccccccccccchhhhhhcc-cCCceEEEEEECC-CCCEEEEEeCCC
Confidence            999999999999999999999999985                  34556666 8999999999999 677999999999


Q ss_pred             eEEEEeCCCCee----EEEeecccccEEEEEEcCCCCeEEEEeCCCcEEEEecCccc-----------------------
Q 021247          224 HVHMYDAEGKSL----VTAMSGHASWVLSVDASPDGAAITTGSSDRTVKLWDLNMRA-----------------------  276 (315)
Q Consensus       224 ~i~~wd~~~~~~----~~~~~~~~~~i~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~-----------------------  276 (315)
                      .|++||+++++.    +..+.+|...|.+++|+|++++|++|+.|+.+ +|+.....                       
T Consensus       228 ~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  306 (377)
T 3dwl_C          228 SVTIAYPSAPEQPPRALITVKLSQLPLRSLLWANESAIVAAGYNYSPI-LLQGNESGWAHTRDLDAGTSKTSFTHTGNTG  306 (377)
T ss_dssp             EEC-CEECSTTSCEEECCCEECSSSCEEEEEEEETTEEEEEESSSSEE-EECCCC---CCSBCCCSCCCCCCBSSSSSBC
T ss_pred             cEEEEECCCCCCcceeeEeecCCCCceEEEEEcCCCCEEEEEcCCcEE-EEEeCCCceEEEeeecccccccccccccccc
Confidence            999999988776    67788999999999999999999988766655 66654111                       


Q ss_pred             ----------------eeh-------------cccccccceEEEEEeeCC-C---EEEEEeCCCcEEEeec
Q 021247          277 ----------------AMQ-------------SMTNHTDQVWGVSFRPLG-G---RVVSVSDDKSISLYEY  314 (315)
Q Consensus       277 ----------------~~~-------------~~~~~~~~v~~~~~s~~~-~---~l~s~~~d~~i~i~~~  314 (315)
                                      ...             ....|...|+++.+.+.. .   .|+|+|.||+|+|||+
T Consensus       307 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~H~~~i~~~~~~~~~~~~~~~~~s~g~Dg~i~iWdl  377 (377)
T 3dwl_C          307 EGREEEGPVSFTALRSTFRNMDLKGSSQSISSLPTVHQNMIATLRPYAGTPGNITAFTSSGTDGRVVLWTL  377 (377)
T ss_dssp             CCCCC-------------------------CCCSSSCSSCEEEEEEEEEETTEEEEEEEEETTSEEEEECC
T ss_pred             cccccccccccccccccccchhhccccccccccCccccceeEEEeccCCCCCceEEEEeecCCCcEEEecC
Confidence                            000             011288999999976653 3   5999999999999985

>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*

Probab=100.00  E-value=9.5e-42  Score=287.54  Aligned_cols=252  Identities=21%  Similarity=0.311  Sum_probs=220.7

Q ss_pred             cceeeccccccceEEEEeCCCCCEEEEeeCCCeEEEEECCCCceeEEeeCCcccEEEEEECCCCCeEEEEecCCCeEEEE
Q 021247           51 QLERTNTGHCLGVVSVAAHPSGIIAASASLDSFVRVFDVDTNASIATLEASPSEVWQMQFDPKGTTLAVAGGGSASVKLW  130 (315)
Q Consensus        51 ~~~~~~~~h~~~v~~~~~~~~g~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~~  130 (315)
                      +..+.+.+|..+|.+++|+|++.++++++.|++|++||+.++..+..+..+...|.+++|+|+++.+ ++++.|+.+++|
T Consensus        46 ~~~~~l~gH~~~v~~~~~s~d~~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l-~s~~~d~~v~iw  124 (340)
T 1got_B           46 RTRRTLRGHLAKIYAMHWGTDSRLLLSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYV-ACGGLDNICSIY  124 (340)
T ss_dssp             CEEEEECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTCCEEEEEECSSSCEEEEEECTTSSEE-EEEETTCEEEEE
T ss_pred             hhheeecCCCCceEEEEECCCCCEEEEEeCCCcEEEEECCCCCcceEeecCCccEEEEEECCCCCEE-EEEeCCCeEEEE
Confidence            3456678999999999999999999999999999999999999999999999999999999998855 678899999999


Q ss_pred             ecCCcceeeeecCCCCCCCCCCccCCCCcceEEEEECCCCCEEEEecCCCcEEEEEcccceeeeeecCCccceEEEEEcC
Q 021247          131 DTATWNLIATLSIPRPEGLKPTDKSSSKKFVLSVAWSPDGRRIACGSMDGTISVFDVTRAKFLHHLEGHFMPVRSLVYSP  210 (315)
Q Consensus       131 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~s~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~  210 (315)
                      |+.+.+.....         ......|...|.++.|++++. +++++.|+.|++||+++++.+..+.+|...|.+++|+|
T Consensus       125 ~~~~~~~~~~~---------~~~~~~h~~~v~~~~~~~~~~-l~s~s~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~  194 (340)
T 1got_B          125 NLKTREGNVRV---------SRELAGHTGYLSCCRFLDDNQ-IVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAP  194 (340)
T ss_dssp             ETTTCSBSCEE---------EEEEECCSSCEEEEEEEETTE-EEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECT
T ss_pred             ECccCCCccee---------EEEecCCCccEEEEEECCCCc-EEEEECCCcEEEEECCCCcEEEEEcCCCCceEEEEECC
Confidence            98764311000         001124556799999998765 88999999999999999999999999999999999999


Q ss_pred             CCCcEEEEEeCCCeEEEEeCCCCeeEEEeecccccEEEEEEcCCCCeEEEEeCCCcEEEEecCccceehcccc--cccce
Q 021247          211 VDPRVLFSASDDTHVHMYDAEGKSLVTAMSGHASWVLSVDASPDGAAITTGSSDRTVKLWDLNMRAAMQSMTN--HTDQV  288 (315)
Q Consensus       211 ~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~--~~~~v  288 (315)
                       +++++++++.|+.|++||++.+..+..+.+|...|.+++|+|++++|++|+.|++|++||++.++.+..+..  +...|
T Consensus       195 -~~~~l~sg~~d~~v~~wd~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~~~~~~v  273 (340)
T 1got_B          195 -DTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGI  273 (340)
T ss_dssp             -TSSEEEEEETTSCEEEEETTTCSEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCTTCCSCE
T ss_pred             -CCCEEEEEeCCCcEEEEECCCCeeEEEEcCCcCCEEEEEEcCCCCEEEEEcCCCcEEEEECCCCcEEEEEccCCcccce
Confidence             678999999999999999999999999999999999999999999999999999999999998776655532  33579


Q ss_pred             EEEEEeeCCCEEEEEeCCCcEEEeec
Q 021247          289 WGVSFRPLGGRVVSVSDDKSISLYEY  314 (315)
Q Consensus       289 ~~~~~s~~~~~l~s~~~d~~i~i~~~  314 (315)
                      ++++|+|+|++|++++.|++|+|||.
T Consensus       274 ~~~~~s~~g~~l~~g~~d~~i~vwd~  299 (340)
T 1got_B          274 TSVSFSKSGRLLLAGYDDFNCNVWDA  299 (340)
T ss_dssp             EEEEECTTSSEEEEEETTSEEEEEET
T ss_pred             EEEEECCCCCEEEEECCCCeEEEEEc
Confidence            99999999999999999999999996

>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.9e-43  Score=312.22  Aligned_cols=288  Identities=14%  Similarity=0.135  Sum_probs=223.0

Q ss_pred             ccccceEEEEEeecCCCCC-----cEE-------------------EEeeCCCcEEEEcCCCCcce----eeccccccce
Q 021247           12 AHEESVWAVTWVPATETRP-----ALL-------------------LTGSLDETVKLWRPDDMQLE----RTNTGHCLGV   63 (315)
Q Consensus        12 ~h~~~v~~v~~~~~~~~~~-----~~l-------------------~sgs~d~~v~~w~~~~~~~~----~~~~~h~~~v   63 (315)
                      .+...|++|+|+|......     .+|                   ++|+.|++|+||+.++.++.    ..+.+|...|
T Consensus       131 ~~~~~V~sv~w~p~~~~~~~~~~~~~LAv~~~~~~~~~~~~~~~~laS~s~D~tI~iWd~~~~~~~~~~~~~l~~~~~~V  210 (524)
T 2j04_B          131 NVGGLVTDIAWLNIEENTDIGKDIQYLAVAVSQYMDEPLNEHLEMFDKEKHSSCIQIFKMNTSTLHCVKVQTIVHSFGEV  210 (524)
T ss_dssp             ECCC--CCCSCEEECCCCSSCSSEEEEEEEEEC------------------CEEEEEEEEETTTCCEEEEEEEEECCCSE
T ss_pred             ECCCceeEEEecccCCCCccCcCCeEEEEEEecccCCccchhhhhhccCCCCceEEEEEccCCCCCceEEEEEEecCCcE
Confidence            3577999999999862211     344                   44668899999998766542    2345678899


Q ss_pred             EEEEeCCC------CCEEEEeeCCCeEEEEECCCCce-----------eEEeeCCcccEEEEEECCCCCeEEEEecCCCe
Q 021247           64 VSVAAHPS------GIIAASASLDSFVRVFDVDTNAS-----------IATLEASPSEVWQMQFDPKGTTLAVAGGGSAS  126 (315)
Q Consensus        64 ~~~~~~~~------g~~l~s~~~d~~i~~w~~~~~~~-----------~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~  126 (315)
                      .+++|+|+      +.+|++++.|++|++||+..+..           ...+..|...|.+++|+|.+  .+++|+.|++
T Consensus       211 ~~v~wsp~~~~~~~~~~LAs~s~DgtvrlWd~~~~~~~~~~~~~~~~p~~~l~~h~~~v~sv~~s~~~--~lasgs~Dgt  288 (524)
T 2j04_B          211 WDLKWHEGCHAPHLVGCLSFVSQEGTINFLEIIDNATDVHVFKMCEKPSLTLSLADSLITTFDFLSPT--TVVCGFKNGF  288 (524)
T ss_dssp             EEEEECSSCCCSSSSCEEEEEETTSCEEEEECCCCSSSSSEEECCCSCSEEECCTTTCEEEEEESSSS--EEEEEETTSE
T ss_pred             EEEEECCCCCCCCCCceEEEEecCCeEEEEEcCCCccccccceeecCceEEEEcCCCCEEEEEecCCC--eEEEEeCCCE
Confidence            99999996      57999999999999999987642           23567788999999999864  4688999999


Q ss_pred             EEEEecCCccee-eeecCCCCCCCCCCccCCCCcceEEE--EECCCC-CEEEEecCCCcEEEEEcccceeeeeecCCcc-
Q 021247          127 VKLWDTATWNLI-ATLSIPRPEGLKPTDKSSSKKFVLSV--AWSPDG-RRIACGSMDGTISVFDVTRAKFLHHLEGHFM-  201 (315)
Q Consensus       127 i~~~d~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~i~~~--~~~~~~-~~l~~~s~dg~i~i~d~~~~~~~~~~~~~~~-  201 (315)
                      |++||+++++.. ..+             ..|...|.++  +|+|++ ++|++|+.|++|++||+++++....+.+|.. 
T Consensus       289 V~lWD~~~~~~~~~~~-------------~~H~~~V~sv~~~~s~~g~~~laS~S~D~tvklWD~~~~~~~~~~~~~~~~  355 (524)
T 2j04_B          289 VAEFDLTDPEVPSFYD-------------QVHDSYILSVSTAYSDFEDTVVSTVAVDGYFYIFNPKDIATTKTTVSRFRG  355 (524)
T ss_dssp             EEEEETTBCSSCSEEE-------------ECSSSCEEEEEEECCTTSCCEEEEEETTSEEEEECGGGHHHHCEEEEECSC
T ss_pred             EEEEECCCCCCceEEe-------------ecccccEEEEEEEcCCCCCeEEEEeccCCeEEEEECCCCCccccccccccc
Confidence            999999864221 111             2456679998  578887 8999999999999999998877666666653 


Q ss_pred             -ceEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCeeEEEeecccccEEEEEEcCCCCeEEEEeCCCcEEEEecCcc-----
Q 021247          202 -PVRSLVYSPVDPRVLFSASDDTHVHMYDAEGKSLVTAMSGHASWVLSVDASPDGAAITTGSSDRTVKLWDLNMR-----  275 (315)
Q Consensus       202 -~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~d~~i~iwd~~~~-----  275 (315)
                       .|.+++|+| +++.+++++.|++|++||++.+..+..+.+|.+.|++++|+|++++|++|+.|++|++||+..+     
T Consensus       356 ~~v~~v~fsp-~~~~l~s~~~d~tv~lwd~~~~~~~~~l~gH~~~V~sva~Sp~g~~l~Sgs~Dgtv~lwd~~~~~~~~~  434 (524)
T 2j04_B          356 SNLVPVVYCP-QIYSYIYSDGASSLRAVPSRAAFAVHPLVSRETTITAIGVSRLHPMVLAGSADGSLIITNAARRLLHGI  434 (524)
T ss_dssp             CSCCCEEEET-TTTEEEEECSSSEEEEEETTCTTCCEEEEECSSCEEEEECCSSCCBCEEEETTTEEECCBSCSSTTTCC
T ss_pred             CcccceEeCC-CcCeEEEeCCCCcEEEEECcccccceeeecCCCceEEEEeCCCCCeEEEEECCCEEEEEechHhhcccc
Confidence             478899999 5667999999999999999988887788899999999999999999999999999999985321     


Q ss_pred             ---------------------------------------ceehcccccccceEEEEEeeCCC---EEEEEeCCCcEEEee
Q 021247          276 ---------------------------------------AAMQSMTNHTDQVWGVSFRPLGG---RVVSVSDDKSISLYE  313 (315)
Q Consensus       276 ---------------------------------------~~~~~~~~~~~~v~~~~~s~~~~---~l~s~~~d~~i~i~~  313 (315)
                                                             ..+.++.+|...|++|+|+|++.   .+|+++.||+|+||+
T Consensus       435 ~~~~~~~~~~~v~~v~~sp~g~~~~~~~~~~~~~~~~~g~~~~~l~gh~~~V~~Vafsp~~~~~~~lAsg~~~g~vrlw~  514 (524)
T 2j04_B          435 KNSSATQKSLRLWKWDYSIKDDKYRIDSSYEVYPLTVNDVSKAKIDAHGINITCTKWNETSAGGKCYAFSNSAGLLTLEY  514 (524)
T ss_dssp             ------CCCCEEEECBCCSSSCEEEECCCCCCCC-------------CCCSCCCEEECCSTTTTTEEEEECTTSEEEEEE
T ss_pred             ccCccceeeeEEEEeccCCCCCeEEccCCceecccccCCcceeeecCCCceEEEEECCCCCCccHHHHhhccCceEEEEE
Confidence                                                   01122345778899999999964   899999999999999


Q ss_pred             cC
Q 021247          314 YS  315 (315)
Q Consensus       314 ~~  315 (315)
                      +.
T Consensus       515 l~  516 (524)
T 2j04_B          515 LS  516 (524)
T ss_dssp             CS
T ss_pred             cc
Confidence            73

>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*

Probab=100.00  E-value=5e-43  Score=305.00  Aligned_cols=286  Identities=17%  Similarity=0.229  Sum_probs=225.8

Q ss_pred             hhccccceEEEEEeecCCCCCcEEEEeeCCCcEEEEcCCCCcc--eeeccccccceEEEEeCC-CCCEEEEeeCCCeEEE
Q 021247           10 ENAHEESVWAVTWVPATETRPALLLTGSLDETVKLWRPDDMQL--ERTNTGHCLGVVSVAAHP-SGIIAASASLDSFVRV   86 (315)
Q Consensus        10 ~~~h~~~v~~v~~~~~~~~~~~~l~sgs~d~~v~~w~~~~~~~--~~~~~~h~~~v~~~~~~~-~g~~l~s~~~d~~i~~   86 (315)
                      ..+|+..|++|+|+|...   .+||+|+.||.|++||..+.+.  .....+|..+|.+++|+| ++.+|++++.|++|++
T Consensus       115 ~~~~~~~V~~l~~~P~~~---~~lasGs~dg~i~lWd~~~~~~~~~~~~~gH~~~V~~l~f~p~~~~~l~s~s~D~~v~i  191 (435)
T 4e54_B          115 AAPFDRRATSLAWHPTHP---STVAVGSKGGDIMLWNFGIKDKPTFIKGIGAGGSITGLKFNPLNTNQFYASSMEGTTRL  191 (435)
T ss_dssp             EEECSSCEEEEEECSSCT---TCEEEEETTSCEEEECSSCCSCCEEECCCSSSCCCCEEEECSSCTTEEEEECSSSCEEE
T ss_pred             CCCCCCCEEEEEEeCCCC---CEEEEEeCCCEEEEEECCCCCceeEEEccCCCCCEEEEEEeCCCCCEEEEEeCCCEEEE
Confidence            457889999999999654   3799999999999999876553  334568999999999998 6899999999999999


Q ss_pred             EECCCCceeEEeeCC--cccEEEEEECCCCCeEEEEecCCCeEEEEecCCcceeeeecCCCCCCCCCCccCCCCcceEEE
Q 021247           87 FDVDTNASIATLEAS--PSEVWQMQFDPKGTTLAVAGGGSASVKLWDTATWNLIATLSIPRPEGLKPTDKSSSKKFVLSV  164 (315)
Q Consensus        87 w~~~~~~~~~~~~~~--~~~v~~~~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~  164 (315)
                      ||++++........+  ...+.+++|+|++..+ ++|+.|+.|++||++.. .+..             ...|...|.++
T Consensus       192 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~g~~dg~i~~wd~~~~-~~~~-------------~~~h~~~v~~v  256 (435)
T 4e54_B          192 QDFKGNILRVFASSDTINIWFCSLDVSASSRMV-VTGDNVGNVILLNMDGK-ELWN-------------LRMHKKKVTHV  256 (435)
T ss_dssp             EETTSCEEEEEECCSSCSCCCCCEEEETTTTEE-EEECSSSBEEEEESSSC-BCCC-------------SBCCSSCEEEE
T ss_pred             eeccCCceeEEeccCCCCccEEEEEECCCCCEE-EEEeCCCcEeeeccCcc-eeEE-------------EecccceEEee
Confidence            999876543333322  3457789999998854 67889999999998642 2221             23456679999


Q ss_pred             EECCCCC-EEEEecCCCcEEEEEcccceeeee---ecCCccceEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCeeEEEee
Q 021247          165 AWSPDGR-RIACGSMDGTISVFDVTRAKFLHH---LEGHFMPVRSLVYSPVDPRVLFSASDDTHVHMYDAEGKSLVTAMS  240 (315)
Q Consensus       165 ~~~~~~~-~l~~~s~dg~i~i~d~~~~~~~~~---~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~  240 (315)
                      +|+|++. +|++|+.|+.|++||+++.+....   ..+|..+|++++|+| ++.+|++++.|+.|++||...+.....+.
T Consensus       257 ~~~p~~~~~~~s~s~d~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~sp-dg~~l~s~~~D~~i~iwd~~~~~~~~~~~  335 (435)
T 4e54_B          257 ALNPCCDWFLATASVDQTVKIWDLRQVRGKASFLYSLPHRHPVNAACFSP-DGARLLTTDQKSEIRVYSASQWDCPLGLI  335 (435)
T ss_dssp             EECTTCSSEEEEEETTSBCCEEETTTCCSSSCCSBCCBCSSCEEECCBCT-TSSEEEEEESSSCEEEEESSSSSSEEEEC
T ss_pred             eecCCCceEEEEecCcceeeEEecccccccceEEEeeeccccccceeECC-CCCeeEEEcCCCEEEEEECCCCccceEEe
Confidence            9999876 678899999999999987664433   357899999999999 67899999999999999999887776665


Q ss_pred             cccc------cEEEEEEcCCCCeEEEEe------------CCCcEEEEecCccceehcc-cccccceEEE-EEeeCCCEE
Q 021247          241 GHAS------WVLSVDASPDGAAITTGS------------SDRTVKLWDLNMRAAMQSM-TNHTDQVWGV-SFRPLGGRV  300 (315)
Q Consensus       241 ~~~~------~i~~~~~~~~~~~l~s~~------------~d~~i~iwd~~~~~~~~~~-~~~~~~v~~~-~~s~~~~~l  300 (315)
                      .|..      .+....|+|++.++++++            .++.|++||..+++.+.++ .+|...|.++ +|+|+|.+|
T Consensus       336 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~i~iwd~~~g~~~~~l~~~~~~~v~s~~~fspdg~~l  415 (435)
T 4e54_B          336 PHPHRHFQHLTPIKAAWHPRYNLIVVGRYPDPNFKSCTPYELRTIDVFDGNSGKMMCQLYDPESSGISSLNEFNPMGDTL  415 (435)
T ss_dssp             CCCCCCCSSSCCCBCEECSSSSCEEEECCCCTTSCCSSTTCCCCEEEECSSSCCEEEEECCSSCCCCCCEEEECTTSSCE
T ss_pred             cccccccccceeEEEEEcCCCCEEEEEEcCCCCeEEEEecCCCEEEEEECCCCcEEEEEeCCCCCcEEEEEEECCCCCEE
Confidence            5532      233456777776666654            3467999999998887665 4677888887 699999999


Q ss_pred             EEEeCCCcEEEeecC
Q 021247          301 VSVSDDKSISLYEYS  315 (315)
Q Consensus       301 ~s~~~d~~i~i~~~~  315 (315)
                      ++++ |++|+||++.
T Consensus       416 asg~-d~~i~iW~~~  429 (435)
T 4e54_B          416 ASAM-GYHILIWSQQ  429 (435)
T ss_dssp             EEEC-SSEEEECCCC
T ss_pred             EEEc-CCcEEEEECC
Confidence            8876 7899999863

>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A

Probab=100.00  E-value=9.8e-42  Score=282.12  Aligned_cols=248  Identities=21%  Similarity=0.381  Sum_probs=207.2

Q ss_pred             eccccccceEEEEeCCCCCEEEEeeCCCeEEEEECCCC--ceeEEeeCCcccEEEEEECCC--CCeEEEEecCCCeEEEE
Q 021247           55 TNTGHCLGVVSVAAHPSGIIAASASLDSFVRVFDVDTN--ASIATLEASPSEVWQMQFDPK--GTTLAVAGGGSASVKLW  130 (315)
Q Consensus        55 ~~~~h~~~v~~~~~~~~g~~l~s~~~d~~i~~w~~~~~--~~~~~~~~~~~~v~~~~~~~~--~~~~~~~~~~d~~i~~~  130 (315)
                      .+.+|...|.+++|+|+|++|++++.|++|++||+...  +.+.++..|..+|++++|+|.  ++ ++++++.|++|++|
T Consensus         4 ~~~~h~~~V~~~~~s~~g~~las~s~D~~v~iw~~~~~~~~~~~~l~gH~~~V~~v~~s~~~~g~-~l~s~s~D~~v~iW   82 (297)
T 2pm7_B            4 IANAHNEMIHDAVMDYYGKRMATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGT-ILASCSYDGKVMIW   82 (297)
T ss_dssp             ECCSCSSCEEEEEECTTSSEEEEEETTSCEEEEEBCSSCBCCCEEECCCSSCEEEEEECCGGGCS-EEEEEETTTEEEEE
T ss_pred             eccCCcCceEEEEECCCCCEEEEEeCCCEEEEEecCCCCcEEEEEEccccCCeEEEEecCCCcCC-EEEEEcCCCEEEEE
Confidence            45689999999999999999999999999999999753  567888999999999999864  44 56889999999999


Q ss_pred             ecCCcceeeeecCCCCCCCCCCccCCCCcceEEEEECCC--CCEEEEecCCCcEEEEEccccee--eeeecCCccceEEE
Q 021247          131 DTATWNLIATLSIPRPEGLKPTDKSSSKKFVLSVAWSPD--GRRIACGSMDGTISVFDVTRAKF--LHHLEGHFMPVRSL  206 (315)
Q Consensus       131 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~--~~~l~~~s~dg~i~i~d~~~~~~--~~~~~~~~~~v~~~  206 (315)
                      |+++++.....           ....|...|.+++|+|+  +.+|++++.|+.|++||++++..  ...+.+|...|.++
T Consensus        83 d~~~~~~~~~~-----------~~~~h~~~v~~v~~~p~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~~~~~h~~~v~~~  151 (297)
T 2pm7_B           83 KEENGRWSQIA-----------VHAVHSASVNSVQWAPHEYGPMLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSA  151 (297)
T ss_dssp             EBSSSCBCCCE-----------EECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEEBCSSSCBCCEEEECCSSCEEEE
T ss_pred             EcCCCceEEEE-----------EeecCCCceeEEEeCcCCCCcEEEEEECCCcEEEEEecCCCceeeeeeecccCccceE
Confidence            99865321111           11234566999999997  88999999999999999986532  35567899999999


Q ss_pred             EEcCCC------------CcEEEEEeCCCeEEEEeCCCCe----eEEEeecccccEEEEEEcCCC---CeEEEEeCCCcE
Q 021247          207 VYSPVD------------PRVLFSASDDTHVHMYDAEGKS----LVTAMSGHASWVLSVDASPDG---AAITTGSSDRTV  267 (315)
Q Consensus       207 ~~~~~~------------~~~l~s~~~d~~i~~wd~~~~~----~~~~~~~~~~~i~~~~~~~~~---~~l~s~~~d~~i  267 (315)
                      +|+|..            +++|++|+.|+.|++||.+.+.    +...+.+|...|.+++|+|++   .+|++++.|++|
T Consensus       152 ~~~p~~~~~~~~~~~~~~~~~l~sgs~D~~v~lwd~~~~~~~~~~~~~l~~H~~~V~~v~~sp~~~~~~~las~s~D~~v  231 (297)
T 2pm7_B          152 SWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYMASVSQDRTC  231 (297)
T ss_dssp             EECCCC------------CCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEETTSCE
T ss_pred             eecCCcccccccCCCCCCcceEEEEcCCCcEEEEEEcCCCceEEEEEEecCCCCceEEEEECCCCCCceEEEEEECCCcE
Confidence            999852            4689999999999999987654    556788999999999999984   799999999999


Q ss_pred             EEEecCccc---eehcc--cccccceEEEEEeeCCCEEEEEeCCCcEEEeec
Q 021247          268 KLWDLNMRA---AMQSM--TNHTDQVWGVSFRPLGGRVVSVSDDKSISLYEY  314 (315)
Q Consensus       268 ~iwd~~~~~---~~~~~--~~~~~~v~~~~~s~~~~~l~s~~~d~~i~i~~~  314 (315)
                      ++||++...   ....+  ..|...|++++|+|+|++|++++.|++|+||+.
T Consensus       232 ~iWd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~las~~~D~~v~lw~~  283 (297)
T 2pm7_B          232 IIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKE  283 (297)
T ss_dssp             EEEEESSTTSCCEEEESSSSCCSSCEEEEEECSSSCCEEEEETTSCEEEEEE
T ss_pred             EEEEeCCCCCccceeeeecccCCCcEEEEEECCCCCEEEEEcCCCcEEEEEE
Confidence            999997642   11122  467889999999999999999999999999985

>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}

Probab=100.00  E-value=6.2e-43  Score=299.17  Aligned_cols=268  Identities=24%  Similarity=0.309  Sum_probs=229.4

Q ss_pred             CcEEEEcCCCCcceeeccccccceEEEEeCCCCCEEEEeeCCCeEEEEECCCCceeEEeeCCcccEEEEEECCCCCeEEE
Q 021247           40 ETVKLWRPDDMQLERTNTGHCLGVVSVAAHPSGIIAASASLDSFVRVFDVDTNASIATLEASPSEVWQMQFDPKGTTLAV  119 (315)
Q Consensus        40 ~~v~~w~~~~~~~~~~~~~h~~~v~~~~~~~~g~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~  119 (315)
                      ..+..|++.+..+.+.+.+|...|.+++|+|++.+|++|+.|++|++||+.+++....+..|...|.+++|+|+++.+ +
T Consensus        46 ~~~~~~~~~~~~~~~~l~gH~~~V~~~~~sp~~~~l~s~s~D~~v~iWd~~~~~~~~~~~~h~~~v~~~~~s~~g~~l-a  124 (380)
T 3iz6_a           46 RTAVSFNPTDLVCCRTLQGHSGKVYSLDWTPEKNWIVSASQDGRLIVWNALTSQKTHAIKLHCPWVMECAFAPNGQSV-A  124 (380)
T ss_dssp             GGCCCCCCCCCEEEEEECCCSSCEEEEEECTTSSCEEEEETTSEEEEEETTTTEEEEEEECCCTTCCCCEECTTSSEE-E
T ss_pred             ccccccccceeEEeecccccccEEEEEEEcCCCCEEEEEeCCCeEEEEECCCCccceEEecCCCCEEEEEECCCCCEE-E
Confidence            445568877777888899999999999999999999999999999999999999999999999999999999998865 6


Q ss_pred             EecCCCeEEEEecCCcceeeeecCCCCCCCCCCccCCCCcceEEEEECCC-CCEEEEecCCCcEEEEEcccceeeeee--
Q 021247          120 AGGGSASVKLWDTATWNLIATLSIPRPEGLKPTDKSSSKKFVLSVAWSPD-GRRIACGSMDGTISVFDVTRAKFLHHL--  196 (315)
Q Consensus       120 ~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-~~~l~~~s~dg~i~i~d~~~~~~~~~~--  196 (315)
                      +|+.|+.+++||+.+.....      ...........|...+.++.|.|+ +..|++|+.|+.|++||+++++.+..+  
T Consensus       125 s~~~d~~v~iw~~~~~~~~~------~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~  198 (380)
T 3iz6_a          125 CGGLDSACSIFNLSSQADRD------GNMPVSRVLTGHKGYASSCQYVPDQETRLITGSGDQTCVLWDVTTGQRISIFGS  198 (380)
T ss_dssp             ECCSSSCCEEEECCCCSSCC------CSSTTCCBCCCCSSCCCCCBCCSSSSSCEEEECTTSCEEEECTTTCCEEEEECC
T ss_pred             EeeCCCcEEEEECCCCcccc------CCccceeeccCCCcceEEEEEecCCCCEEEEECCCCcEEEEEcCCCcEEEEeec
Confidence            88999999999986532110      000011123456777889999996 457999999999999999999887766  


Q ss_pred             ---cCCccceEEEEEcCCCCcEEEEEeCCCeEEEEeCC-CCeeEEEeecccccEEEEEEcCCCCeEEEEeCCCcEEEEec
Q 021247          197 ---EGHFMPVRSLVYSPVDPRVLFSASDDTHVHMYDAE-GKSLVTAMSGHASWVLSVDASPDGAAITTGSSDRTVKLWDL  272 (315)
Q Consensus       197 ---~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~-~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~d~~i~iwd~  272 (315)
                         .+|...|.++.|+|.++.++++|+.|+.|++||++ ....+..+.+|...|.+++|+|++++|++|+.|++|++||+
T Consensus       199 ~~~~~h~~~v~~~~~~~~~~~~l~sgs~D~~v~~wd~~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~i~lwd~  278 (380)
T 3iz6_a          199 EFPSGHTADVLSLSINSLNANMFISGSCDTTVRLWDLRITSRAVRTYHGHEGDINSVKFFPDGQRFGTGSDDGTCRLFDM  278 (380)
T ss_dssp             CSSSSCCSCEEEEEECSSSCCEEEEEETTSCEEEEETTTTCCCCEEECCCSSCCCEEEECTTSSEEEEECSSSCEEEEET
T ss_pred             ccCCCCccCeEEEEeecCCCCEEEEEECCCeEEEEECCCCCcceEEECCcCCCeEEEEEecCCCeEEEEcCCCeEEEEEC
Confidence               67899999999998788999999999999999997 45677788999999999999999999999999999999999


Q ss_pred             Cccceehcccccc-------cceEEEEEeeCCCEEEEEeCCCcEEEeec
Q 021247          273 NMRAAMQSMTNHT-------DQVWGVSFRPLGGRVVSVSDDKSISLYEY  314 (315)
Q Consensus       273 ~~~~~~~~~~~~~-------~~v~~~~~s~~~~~l~s~~~d~~i~i~~~  314 (315)
                      ++++.+..+..+.       ..|++++|+|+|++|++++.||.|+|||.
T Consensus       279 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~vwd~  327 (380)
T 3iz6_a          279 RTGHQLQVYNREPDRNDNELPIVTSVAFSISGRLLFAGYSNGDCYVWDT  327 (380)
T ss_dssp             TTTEEEEEECCCCSSSCCSSCSCSEEEECSSSSEEEEECTTSCEEEEET
T ss_pred             CCCcEEEEecccccccccccCceEEEEECCCCCEEEEEECCCCEEEEEC
Confidence            9988776654432       34889999999999999999999999995

>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}

Probab=100.00  E-value=6.2e-41  Score=279.38  Aligned_cols=276  Identities=21%  Similarity=0.356  Sum_probs=231.3

Q ss_pred             eEEEEEeecCCCCCcEEEEeeCCCcEEEEcCCCCcceeec--cccccceEEEEeCCCCCEEEEeeCCCeEEEEECCCCce
Q 021247           17 VWAVTWVPATETRPALLLTGSLDETVKLWRPDDMQLERTN--TGHCLGVVSVAAHPSGIIAASASLDSFVRVFDVDTNAS   94 (315)
Q Consensus        17 v~~v~~~~~~~~~~~~l~sgs~d~~v~~w~~~~~~~~~~~--~~h~~~v~~~~~~~~g~~l~s~~~d~~i~~w~~~~~~~   94 (315)
                      .++|+|+|.     .+|++ +.|++|++||.+++++.+.+  .+|...|.+++|+|+|+++++|+.|++|++|++++++.
T Consensus        28 ~~~l~WS~~-----~~lAv-g~D~tV~iWd~~tg~~~~~~~~~~~~~~V~~v~~~~~~~~l~sgs~Dg~v~iw~~~~~~~  101 (318)
T 4ggc_A           28 LNLVDWSSG-----NVLAV-ALDNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKR  101 (318)
T ss_dssp             CBCEEECTT-----SEEEE-EETTEEEEEETTTCCEEEEEECCSTTCCEEEEEECTTSSEEEEEETTSEEEEEETTTTEE
T ss_pred             ceEEEECCC-----CEEEE-EeCCEEEEEECCCCCEEEEEEecCCCCeEEEEEECCCCCEEEEEECCCcEEEeecCCcee
Confidence            578999863     25655 46999999999998877654  46788899999999999999999999999999999999


Q ss_pred             eEEeeCCcccEEEEEECCCCCeEEEEecCCCeEEEEecCCcceeeeecCCCCCCCCCCccCCCCcceEEEEECCCCCEEE
Q 021247           95 IATLEASPSEVWQMQFDPKGTTLAVAGGGSASVKLWDTATWNLIATLSIPRPEGLKPTDKSSSKKFVLSVAWSPDGRRIA  174 (315)
Q Consensus        95 ~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~  174 (315)
                      +..+..|...+..+.+.+  . ++++++.++.+++|+..........            ...|...+..+.+++++++|+
T Consensus       102 ~~~~~~h~~~~~~~~~~~--~-~l~s~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~l~  166 (318)
T 4ggc_A          102 LRNMTSHSARVGSLSWNS--Y-ILSSGSRSGHIHHHDVRVAEHHVAT------------LSGHSQEVCGLRWAPDGRHLA  166 (318)
T ss_dssp             EEEEECCSSCEEEEEEET--T-EEEEEETTSEEEEEETTSSSCEEEE------------EECCSSCEEEEEECTTSSEEE
T ss_pred             EEEecCccceEEEeecCC--C-EEEEEecCCceEeeecCCCceeEEE------------EcCccCceEEEEEcCCCCEEE
Confidence            999999998888777654  3 6678899999999998764332211            123455688999999999999


Q ss_pred             EecCCCcEEEEEccccee----eeeecCCccceEEEEEcCCCCcEEE--EEeCCCeEEEEeCCCCeeEEEeecccccEEE
Q 021247          175 CGSMDGTISVFDVTRAKF----LHHLEGHFMPVRSLVYSPVDPRVLF--SASDDTHVHMYDAEGKSLVTAMSGHASWVLS  248 (315)
Q Consensus       175 ~~s~dg~i~i~d~~~~~~----~~~~~~~~~~v~~~~~~~~~~~~l~--s~~~d~~i~~wd~~~~~~~~~~~~~~~~i~~  248 (315)
                      +++.|+.|++||+++++.    ......+...|..+.++|.++..+.  +++.++.|++||.+........ .+...+..
T Consensus       167 s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~i~lwd~~~~~~~~~~-~~~~~v~~  245 (318)
T 4ggc_A          167 SGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAV-DAHSQVCS  245 (318)
T ss_dssp             EEETTSCEEEEESSCBTTBSCCSEEECCCCSCEEEEEECTTSTTEEEEEECTTTCEEEEEETTTCCEEEEE-ECSSCEEE
T ss_pred             EEecCcceeEEECCCCcccccceeeecccCCceEEEEecCCCCcEEEEEecCCCCEEEEEecccccccccc-cceeeeee
Confidence            999999999999987653    3445667889999999997777654  5667899999999887665544 46677899


Q ss_pred             EEEcCCCCeEEEEe--CCCcEEEEecCccceehcccccccceEEEEEeeCCCEEEEEeCCCcEEEeec
Q 021247          249 VDASPDGAAITTGS--SDRTVKLWDLNMRAAMQSMTNHTDQVWGVSFRPLGGRVVSVSDDKSISLYEY  314 (315)
Q Consensus       249 ~~~~~~~~~l~s~~--~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~i~i~~~  314 (315)
                      +.++|++..+++++  .|+.|++||+++++.+.++.+|.+.|++++|+|+|++|+++|.||+|+|||+
T Consensus       246 ~~~~~~~~~~~~~sg~~d~~i~iwd~~~~~~~~~l~gH~~~V~~l~~spdg~~l~S~s~D~~v~iWd~  313 (318)
T 4ggc_A          246 ILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAELKGHTSRVLSLTMSPDGATVASAAADETLRLWRC  313 (318)
T ss_dssp             EEEETTTTEEEEEECTTTCCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSCEEEEETTTEEEEECC
T ss_pred             eeecccccceEEEEEcCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEecCCeEEEEEC
Confidence            99999998877654  7999999999999999999999999999999999999999999999999996

>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A

Probab=100.00  E-value=6.7e-41  Score=290.01  Aligned_cols=299  Identities=15%  Similarity=0.176  Sum_probs=242.8

Q ss_pred             hhccccceEEEEEeecCCCCCcEEEEeeCCCcEEEEcCCCCcceeeccccccceEEEEeCCCCCEEEEeeCCCeEEEEEC
Q 021247           10 ENAHEESVWAVTWVPATETRPALLLTGSLDETVKLWRPDDMQLERTNTGHCLGVVSVAAHPSGIIAASASLDSFVRVFDV   89 (315)
Q Consensus        10 ~~~h~~~v~~v~~~~~~~~~~~~l~sgs~d~~v~~w~~~~~~~~~~~~~h~~~v~~~~~~~~g~~l~s~~~d~~i~~w~~   89 (315)
                      ...| ..+....|+|.+.    +|++|+.||.|++|+..+.+....+.+|...|.+++|+|++.+|++++.|++|++||+
T Consensus        94 ~~~~-~~~~~~~~~~~~~----~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~  168 (420)
T 3vl1_A           94 LKRA-DYTAVDTAKLQMR----RFILGTTEGDIKVLDSNFNLQREIDQAHVSEITKLKFFPSGEALISSSQDMQLKIWSV  168 (420)
T ss_dssp             SCSC-CEEEEEEECSSSC----EEEEEETTSCEEEECTTSCEEEEETTSSSSCEEEEEECTTSSEEEEEETTSEEEEEET
T ss_pred             EecC-CceEEEEEecCCC----EEEEEECCCCEEEEeCCCcceeeecccccCccEEEEECCCCCEEEEEeCCCeEEEEeC
Confidence            3444 3344445666554    7999999999999999988888888899999999999999999999999999999999


Q ss_pred             CCCceeEEeeCCcccEEEEEECCCCCeEEEEecCCCeEEEEecCCcceeeeecCCCCCCCC-----------CCccCCCC
Q 021247           90 DTNASIATLEASPSEVWQMQFDPKGTTLAVAGGGSASVKLWDTATWNLIATLSIPRPEGLK-----------PTDKSSSK  158 (315)
Q Consensus        90 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~  158 (315)
                      .+++.+..+..|...|.+++|+|+++.+ ++++.|++|++||+++++.+..+..+......           ......+.
T Consensus       169 ~~~~~~~~~~~h~~~v~~~~~~~~~~~l-~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~  247 (420)
T 3vl1_A          169 KDGSNPRTLIGHRATVTDIAIIDRGRNV-LSASLDGTIRLWECGTGTTIHTFNRKENPHDGVNSIALFVGTDRQLHEIST  247 (420)
T ss_dssp             TTCCCCEEEECCSSCEEEEEEETTTTEE-EEEETTSCEEEEETTTTEEEEEECBTTBTTCCEEEEEEEECCCSSCGGGCC
T ss_pred             CCCcCceEEcCCCCcEEEEEEcCCCCEE-EEEcCCCcEEEeECCCCceeEEeecCCCCCCCccEEEEecCCcceeeeccc
Confidence            9999999999999999999999998865 57889999999999998888777543211000           00011123


Q ss_pred             cceEEEEECCCCCEEEEecCCCcEEEEEcccceeeeeec-CCccceEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCe-eE
Q 021247          159 KFVLSVAWSPDGRRIACGSMDGTISVFDVTRAKFLHHLE-GHFMPVRSLVYSPVDPRVLFSASDDTHVHMYDAEGKS-LV  236 (315)
Q Consensus       159 ~~i~~~~~~~~~~~l~~~s~dg~i~i~d~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~-~~  236 (315)
                      ..+.+++|+|++++|++|+.||.|++||+++++....+. .|...|.+++|+|.+..++++++.|+.|++||++.+. .+
T Consensus       248 ~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~  327 (420)
T 3vl1_A          248 SKKNNLEFGTYGKYVIAGHVSGVITVHNVFSKEQTIQLPSKFTCSCNSLTVDGNNANYIYAGYENGMLAQWDLRSPECPV  327 (420)
T ss_dssp             CCCCTTCSSCTTEEEEEEETTSCEEEEETTTCCEEEEECCTTSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTSCS
T ss_pred             CcccceEEcCCCCEEEEEcCCCeEEEEECCCCceeEEcccccCCCceeEEEeCCCCCEEEEEeCCCeEEEEEcCCCcCch
Confidence            446677889999999999999999999999888766664 5788999999999655599999999999999998764 35


Q ss_pred             EEeec-ccccEEEEEEcCCCCeEEEEeCCCcEEEEecCccce---------ehcccccccceEEEEEeeCCC---EEEEE
Q 021247          237 TAMSG-HASWVLSVDASPDGAAITTGSSDRTVKLWDLNMRAA---------MQSMTNHTDQVWGVSFRPLGG---RVVSV  303 (315)
Q Consensus       237 ~~~~~-~~~~i~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~---------~~~~~~~~~~v~~~~~s~~~~---~l~s~  303 (315)
                      ..+.. |...|.++.+ +++++|++++.|+.|++|++.....         ...+..|...+.+++|+|++.   .|+++
T Consensus       328 ~~~~~~~~~~v~~~~~-~~~~~l~s~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~g~l~a~  406 (420)
T 3vl1_A          328 GEFLINEGTPINNVYF-AAGALFVSSGFDTSIKLDIISDPESERPAIEFETPTFLVSNDDAVSQFCYVSDDESNGEVLEV  406 (420)
T ss_dssp             EEEEESTTSCEEEEEE-ETTEEEEEETTTEEEEEEEECCTTCCSCEECTTSCEEECCSSCCCCEEEEECCSSSSCEEEEE
T ss_pred             hhhhccCCCCceEEEe-CCCCEEEEecCCccEEEEeccCCCCCccceeccCccEEccCCcceEEEEEccCCCCcceEEEE
Confidence            66665 6677887755 5778999999999999999876321         122456778999999999999   89999


Q ss_pred             eCCCcEEEeecC
Q 021247          304 SDDKSISLYEYS  315 (315)
Q Consensus       304 ~~d~~i~i~~~~  315 (315)
                      +.+|.+.+|+++
T Consensus       407 g~~g~~~~~~~~  418 (420)
T 3vl1_A          407 GKNNFCALYNLS  418 (420)
T ss_dssp             ETTTEEEEEESC
T ss_pred             cCCceEEEEecc
Confidence            999999999874

>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*

Probab=100.00  E-value=2.3e-41  Score=329.18  Aligned_cols=288  Identities=24%  Similarity=0.371  Sum_probs=253.5

Q ss_pred             hhhccccceEEEEEeecCCCCCcEEEEeeCCCcEEEEcCCCCcceeeccccccceEEEEeCCCCCEEEEeeCCCeEEEEE
Q 021247            9 VENAHEESVWAVTWVPATETRPALLLTGSLDETVKLWRPDDMQLERTNTGHCLGVVSVAAHPSGIIAASASLDSFVRVFD   88 (315)
Q Consensus         9 ~~~~h~~~v~~v~~~~~~~~~~~~l~sgs~d~~v~~w~~~~~~~~~~~~~h~~~v~~~~~~~~g~~l~s~~~d~~i~~w~   88 (315)
                      +..+|.+.|++++|+|++.    ++++|+.||+|++|+..+.+....+.+|...|.+++|+|+|.++++++.|++|++||
T Consensus       610 ~~~~h~~~v~~~~~s~~~~----~l~s~~~d~~i~vw~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd  685 (1249)
T 3sfz_A          610 VVRPHTDAVYHACFSQDGQ----RIASCGADKTLQVFKAETGEKLLDIKAHEDEVLCCAFSSDDSYIATCSADKKVKIWD  685 (1249)
T ss_dssp             EECCCSSCEEEEEECTTSS----EEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEE
T ss_pred             EEecccccEEEEEECCCCC----EEEEEeCCCeEEEEECCCCCEEEEeccCCCCEEEEEEecCCCEEEEEeCCCeEEEEE
Confidence            3468999999999999775    799999999999999999988888999999999999999999999999999999999


Q ss_pred             CCCCceeEEeeCCcccEEEEEECCCC-CeEEEEecCCCeEEEEecCCcceeeeecCCCCCCCCCCccCCCCcceEEEEEC
Q 021247           89 VDTNASIATLEASPSEVWQMQFDPKG-TTLAVAGGGSASVKLWDTATWNLIATLSIPRPEGLKPTDKSSSKKFVLSVAWS  167 (315)
Q Consensus        89 ~~~~~~~~~~~~~~~~v~~~~~~~~~-~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~  167 (315)
                      +.+++.+..+..|...|.+++|+|++ ..++++++.|+.|++||+++++.+..+.             .|...|.+++|+
T Consensus       686 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~~~~~-------------~h~~~v~~~~~s  752 (1249)
T 3sfz_A          686 SATGKLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKECRNTMF-------------GHTNSVNHCRFS  752 (1249)
T ss_dssp             TTTCCEEEEEECCSSCEEEEEECSSSSCCEEEEEETTSCEEEEETTSSSEEEEEC-------------CCSSCEEEEEEC
T ss_pred             CCCCceEEEEcCCCCcEEEEEEecCCCceEEEEEeCCCeEEEEECCCcchhheec-------------CCCCCEEEEEEe
Confidence            99999999999999999999999964 3467788999999999999888776653             345569999999


Q ss_pred             CCCCEEEEecCCCcEEEEEcccceeeeee---------------------------------------------------
Q 021247          168 PDGRRIACGSMDGTISVFDVTRAKFLHHL---------------------------------------------------  196 (315)
Q Consensus       168 ~~~~~l~~~s~dg~i~i~d~~~~~~~~~~---------------------------------------------------  196 (315)
                      |++++|++++.||.|++||+.+++....+                                                   
T Consensus       753 p~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~~~v~~~d~~~~~~~  832 (1249)
T 3sfz_A          753 PDDELLASCSADGTLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAAKNKVLLFDIHTSGLL  832 (1249)
T ss_dssp             SSTTEEEEEESSSEEEEEEGGGTEEEEEEECCCCC--------CCCCCBCCCCBCTTSSEEEEEETTEEEEEETTTCCEE
T ss_pred             cCCCEEEEEECCCeEEEEeCCCCcccceecccccccccCCccccccceEEEEEECCCCCEEEEEcCCcEEEEEecCCCce
Confidence            99999999999999999999776543222                                                   


Q ss_pred             ----cCCccceEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCeeEEEeecccccEEEEEEcCCCCeEEEEeCCCcEEEEec
Q 021247          197 ----EGHFMPVRSLVYSPVDPRVLFSASDDTHVHMYDAEGKSLVTAMSGHASWVLSVDASPDGAAITTGSSDRTVKLWDL  272 (315)
Q Consensus       197 ----~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~d~~i~iwd~  272 (315)
                          .+|...+.+++|+| ++.++++++.|+.|++||..++..+..+.+|...|.+++|+|+++.|++++.|+.|++|++
T Consensus       833 ~~~~~~~~~~v~~~~~sp-~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~h~~~v~~v~~spdg~~l~s~s~dg~v~vw~~  911 (1249)
T 3sfz_A          833 AEIHTGHHSTIQYCDFSP-YDHLAVIALSQYCVELWNIDSRLKVADCRGHLSWVHGVMFSPDGSSFLTASDDQTIRVWET  911 (1249)
T ss_dssp             EEEECSSSSCCCEEEECS-STTEEEEECSSSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEH
T ss_pred             eEEcCCCCCceEEEEEcC-CCCEEEEEeCCCeEEEEEcCCCceeeecCCCccceEEEEECCCCCEEEEEeCCCeEEEEEc
Confidence                15677889999998 6789999999999999999999999999999999999999999999999999999999985


Q ss_pred             Cc------------------------------------------------------------------------------
Q 021247          273 NM------------------------------------------------------------------------------  274 (315)
Q Consensus       273 ~~------------------------------------------------------------------------------  274 (315)
                      ..                                                                              
T Consensus       912 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~~g~~~g~i~i~d~~  991 (1249)
T 3sfz_A          912 KKVCKNSAIVLKQEIDVVFQENETMVLAVDNIRGLQLIAGKTGQIDYLPEAQVSCCCLSPHLEYVAFGDEDGAIKIIELP  991 (1249)
T ss_dssp             HHHHSCCSSSEEEEEEEEEETTEEEEEEEESSSSEEEEEESSCCEEEECCSCEEEEEECTTSSEEEEEETTSCCEEEETT
T ss_pred             cccceeeeecccceeeEEEcCCCcEEEEecCCcceEEEecCcceEEEcccCcEEEEEEcCCCCEEEEEcCCCCEEEEEcC
Confidence            42                                                                              


Q ss_pred             -cceehcccccccceEEEEEeeCCCEEEEEeCCCcEEEeec
Q 021247          275 -RAAMQSMTNHTDQVWGVSFRPLGGRVVSVSDDKSISLYEY  314 (315)
Q Consensus       275 -~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~i~i~~~  314 (315)
                       ++....+.+|...|++++|+|+|++|++++.||+|++|++
T Consensus       992 ~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~dg~i~vwd~ 1032 (1249)
T 3sfz_A          992 NNRVFSSGVGHKKAVRHIQFTADGKTLISSSEDSVIQVWNW 1032 (1249)
T ss_dssp             TTSCEEECCCCSSCCCCEEECSSSSCEEEECSSSBEEEEET
T ss_pred             CCceeeecccCCCceEEEEECCCCCEEEEEcCCCEEEEEEC
Confidence             1222334568889999999999999999999999999996

>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A

Probab=100.00  E-value=4.3e-42  Score=297.48  Aligned_cols=280  Identities=18%  Similarity=0.162  Sum_probs=235.2

Q ss_pred             cceEEEEEeecCCCCCcEEEEeeCCCcEEEEcCCCCcceeeccccccceEEEEeCCCCCEEEEeeCCCeEEEEECCCCce
Q 021247           15 ESVWAVTWVPATETRPALLLTGSLDETVKLWRPDDMQLERTNTGHCLGVVSVAAHPSGIIAASASLDSFVRVFDVDTNAS   94 (315)
Q Consensus        15 ~~v~~v~~~~~~~~~~~~l~sgs~d~~v~~w~~~~~~~~~~~~~h~~~v~~~~~~~~g~~l~s~~~d~~i~~w~~~~~~~   94 (315)
                      +.+++++|+|.+.    +|++|+.|+.|++|+..+.+....+..| ..+....+++++.+|++++.|+.|++||+.+++.
T Consensus        57 ~~~~~~~~s~~g~----~l~~~~~d~~v~i~d~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~  131 (420)
T 3vl1_A           57 DAGKGNTFEKVGS----HLYKARLDGHDFLFNTIIRDGSKMLKRA-DYTAVDTAKLQMRRFILGTTEGDIKVLDSNFNLQ  131 (420)
T ss_dssp             BCCTTCEEEEEET----TEEEEEETTEEEEEECCSEETTTTSCSC-CEEEEEEECSSSCEEEEEETTSCEEEECTTSCEE
T ss_pred             ccccceeeeecCC----eEEEEEcCCcEEEEEecccceeeEEecC-CceEEEEEecCCCEEEEEECCCCEEEEeCCCcce
Confidence            3455889999876    5999999999999999877766666666 4445557899999999999999999999999888


Q ss_pred             eEEeeCCcccEEEEEECCCCCeEEEEecCCCeEEEEecCCcceeeeecCCCCCCCCCCccCCCCcceEEEEECCCCCEEE
Q 021247           95 IATLEASPSEVWQMQFDPKGTTLAVAGGGSASVKLWDTATWNLIATLSIPRPEGLKPTDKSSSKKFVLSVAWSPDGRRIA  174 (315)
Q Consensus        95 ~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~  174 (315)
                      ...+..|...|.+++|+|+++. +++++.|++|++||+++++.+..+.             .|...|.+++|+|++++|+
T Consensus       132 ~~~~~~h~~~v~~~~~~~~~~~-l~s~s~d~~i~iwd~~~~~~~~~~~-------------~h~~~v~~~~~~~~~~~l~  197 (420)
T 3vl1_A          132 REIDQAHVSEITKLKFFPSGEA-LISSSQDMQLKIWSVKDGSNPRTLI-------------GHRATVTDIAIIDRGRNVL  197 (420)
T ss_dssp             EEETTSSSSCEEEEEECTTSSE-EEEEETTSEEEEEETTTCCCCEEEE-------------CCSSCEEEEEEETTTTEEE
T ss_pred             eeecccccCccEEEEECCCCCE-EEEEeCCCeEEEEeCCCCcCceEEc-------------CCCCcEEEEEEcCCCCEEE
Confidence            8888889999999999999885 4678899999999999877665553             3455699999999999999


Q ss_pred             EecCCCcEEEEEcccceeeeeecC---CccceEEEEE---------------------cCCCCcEEEEEeCCCeEEEEeC
Q 021247          175 CGSMDGTISVFDVTRAKFLHHLEG---HFMPVRSLVY---------------------SPVDPRVLFSASDDTHVHMYDA  230 (315)
Q Consensus       175 ~~s~dg~i~i~d~~~~~~~~~~~~---~~~~v~~~~~---------------------~~~~~~~l~s~~~d~~i~~wd~  230 (315)
                      +++.|+.|++||+++++.+..+..   +...+.++.|                     +| +++++++++.|+.|++||+
T Consensus       198 s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~~dg~i~i~d~  276 (420)
T 3vl1_A          198 SASLDGTIRLWECGTGTTIHTFNRKENPHDGVNSIALFVGTDRQLHEISTSKKNNLEFGT-YGKYVIAGHVSGVITVHNV  276 (420)
T ss_dssp             EEETTSCEEEEETTTTEEEEEECBTTBTTCCEEEEEEEECCCSSCGGGCCCCCCTTCSSC-TTEEEEEEETTSCEEEEET
T ss_pred             EEcCCCcEEEeECCCCceeEEeecCCCCCCCccEEEEecCCcceeeecccCcccceEEcC-CCCEEEEEcCCCeEEEEEC
Confidence            999999999999999988887764   4445555555                     55 6779999999999999999


Q ss_pred             CCCeeEEEe-ecccccEEEEEEcCCCC-eEEEEeCCCcEEEEecCccce-ehcccc-cccceEEEEEeeCCCEEEEEeCC
Q 021247          231 EGKSLVTAM-SGHASWVLSVDASPDGA-AITTGSSDRTVKLWDLNMRAA-MQSMTN-HTDQVWGVSFRPLGGRVVSVSDD  306 (315)
Q Consensus       231 ~~~~~~~~~-~~~~~~i~~~~~~~~~~-~l~s~~~d~~i~iwd~~~~~~-~~~~~~-~~~~v~~~~~s~~~~~l~s~~~d  306 (315)
                      +.++.+..+ ..|...|.+++|+|+++ +|++|+.||.|++||++.++. +..+.. |...+.++. .+++++|++++.|
T Consensus       277 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~-~~~~~~l~s~~~d  355 (420)
T 3vl1_A          277 FSKEQTIQLPSKFTCSCNSLTVDGNNANYIYAGYENGMLAQWDLRSPECPVGEFLINEGTPINNVY-FAAGALFVSSGFD  355 (420)
T ss_dssp             TTCCEEEEECCTTSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTSCSEEEEESTTSCEEEEE-EETTEEEEEETTT
T ss_pred             CCCceeEEcccccCCCceeEEEeCCCCCEEEEEeCCCeEEEEEcCCCcCchhhhhccCCCCceEEE-eCCCCEEEEecCC
Confidence            988766655 45888999999999998 999999999999999998654 666665 666787774 5678899999999


Q ss_pred             CcEEEeecC
Q 021247          307 KSISLYEYS  315 (315)
Q Consensus       307 ~~i~i~~~~  315 (315)
                      ++|+||++.
T Consensus       356 ~~v~iw~~~  364 (420)
T 3vl1_A          356 TSIKLDIIS  364 (420)
T ss_dssp             EEEEEEEEC
T ss_pred             ccEEEEecc
Confidence            999999963

>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A

Probab=100.00  E-value=1.9e-41  Score=280.42  Aligned_cols=250  Identities=22%  Similarity=0.301  Sum_probs=208.1

Q ss_pred             hhhccccceEEEEEeecCCCCCcEEEEeeCCCcEEEEcCCC--CcceeeccccccceEEEEeCCC--CCEEEEeeCCCeE
Q 021247            9 VENAHEESVWAVTWVPATETRPALLLTGSLDETVKLWRPDD--MQLERTNTGHCLGVVSVAAHPS--GIIAASASLDSFV   84 (315)
Q Consensus         9 ~~~~h~~~v~~v~~~~~~~~~~~~l~sgs~d~~v~~w~~~~--~~~~~~~~~h~~~v~~~~~~~~--g~~l~s~~~d~~i   84 (315)
                      ++.+|++.|++++|+|+++    +|++|+.|++|++|+...  .+....+.+|..+|.+++|++.  |.+|++++.|++|
T Consensus         4 ~~~~h~~~V~~~~~s~~g~----~las~s~D~~v~iw~~~~~~~~~~~~l~gH~~~V~~v~~s~~~~g~~l~s~s~D~~v   79 (297)
T 2pm7_B            4 IANAHNEMIHDAVMDYYGK----RMATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKV   79 (297)
T ss_dssp             ECCSCSSCEEEEEECTTSS----EEEEEETTSCEEEEEBCSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTTEE
T ss_pred             eccCCcCceEEEEECCCCC----EEEEEeCCCEEEEEecCCCCcEEEEEEccccCCeEEEEecCCCcCCEEEEEcCCCEE
Confidence            4578999999999999875    799999999999999864  3566778899999999999864  8999999999999


Q ss_pred             EEEECCCCc--eeEEeeCCcccEEEEEECCC--CCeEEEEecCCCeEEEEecCCcceeeeecCCCCCCCCCCccCCCCcc
Q 021247           85 RVFDVDTNA--SIATLEASPSEVWQMQFDPK--GTTLAVAGGGSASVKLWDTATWNLIATLSIPRPEGLKPTDKSSSKKF  160 (315)
Q Consensus        85 ~~w~~~~~~--~~~~~~~~~~~v~~~~~~~~--~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  160 (315)
                      ++||+.++.  .+..+..|...|.+++|+|+  +. ++++++.|++|++||++.......           .....|...
T Consensus        80 ~iWd~~~~~~~~~~~~~~h~~~v~~v~~~p~~~g~-~l~s~s~d~~v~~wd~~~~~~~~~-----------~~~~~h~~~  147 (297)
T 2pm7_B           80 MIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGP-MLLVASSDGKVSVVEFKENGTTSP-----------IIIDAHAIG  147 (297)
T ss_dssp             EEEEBSSSCBCCCEEECCCSSCEEEEEECCGGGCS-EEEEEETTSEEEEEEBCSSSCBCC-----------EEEECCSSC
T ss_pred             EEEEcCCCceEEEEEeecCCCceeEEEeCcCCCCc-EEEEEECCCcEEEEEecCCCceee-----------eeeecccCc
Confidence            999998874  45667778899999999997  55 557889999999999976432110           111235556


Q ss_pred             eEEEEECCC-------------CCEEEEecCCCcEEEEEcccce----eeeeecCCccceEEEEEcCCC--CcEEEEEeC
Q 021247          161 VLSVAWSPD-------------GRRIACGSMDGTISVFDVTRAK----FLHHLEGHFMPVRSLVYSPVD--PRVLFSASD  221 (315)
Q Consensus       161 i~~~~~~~~-------------~~~l~~~s~dg~i~i~d~~~~~----~~~~~~~~~~~v~~~~~~~~~--~~~l~s~~~  221 (315)
                      |.+++|+|+             +++|++|+.|+.|++||+++++    ....+.+|...|++++|+|..  +.+|++++.
T Consensus       148 v~~~~~~p~~~~~~~~~~~~~~~~~l~sgs~D~~v~lwd~~~~~~~~~~~~~l~~H~~~V~~v~~sp~~~~~~~las~s~  227 (297)
T 2pm7_B          148 VNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYMASVSQ  227 (297)
T ss_dssp             EEEEEECCCC------------CCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEET
T ss_pred             cceEeecCCcccccccCCCCCCcceEEEEcCCCcEEEEEEcCCCceEEEEEEecCCCCceEEEEECCCCCCceEEEEEEC
Confidence            999999996             5799999999999999998655    556788999999999999964  589999999


Q ss_pred             CCeEEEEeCCCCe---eEEEe--ecccccEEEEEEcCCCCeEEEEeCCCcEEEEecCc
Q 021247          222 DTHVHMYDAEGKS---LVTAM--SGHASWVLSVDASPDGAAITTGSSDRTVKLWDLNM  274 (315)
Q Consensus       222 d~~i~~wd~~~~~---~~~~~--~~~~~~i~~~~~~~~~~~l~s~~~d~~i~iwd~~~  274 (315)
                      |++|++||.+...   ....+  ..|...|.+++|+|++++|++++.|++|++|+...
T Consensus       228 D~~v~iWd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~las~~~D~~v~lw~~~~  285 (297)
T 2pm7_B          228 DRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKENL  285 (297)
T ss_dssp             TSCEEEEEESSTTSCCEEEESSSSCCSSCEEEEEECSSSCCEEEEETTSCEEEEEECT
T ss_pred             CCcEEEEEeCCCCCccceeeeecccCCCcEEEEEECCCCCEEEEEcCCCcEEEEEECC
Confidence            9999999987532   12223  46788999999999999999999999999999763

>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}

Probab=100.00  E-value=7.4e-41  Score=283.53  Aligned_cols=256  Identities=22%  Similarity=0.267  Sum_probs=222.3

Q ss_pred             cceeeccccccceEEEEeCCCCCEEEEeeCCCeEEEEECCCCceeEEeeCCcccEEEEEECCCCCeEEEEecCCCeEEEE
Q 021247           51 QLERTNTGHCLGVVSVAAHPSGIIAASASLDSFVRVFDVDTNASIATLEASPSEVWQMQFDPKGTTLAVAGGGSASVKLW  130 (315)
Q Consensus        51 ~~~~~~~~h~~~v~~~~~~~~g~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~~  130 (315)
                      +..+.+.+|...|.+++|+|++.+|++++.|++|++||..++.....+..+...|.+++|+|++..+ ++++.|+.+++|
T Consensus        55 ~~~~~l~gH~~~V~~~~~s~d~~~l~s~s~Dg~v~vWd~~~~~~~~~~~~~~~~v~~~~~sp~g~~l-asg~~d~~i~v~  133 (354)
T 2pbi_B           55 KTRRTLKGHGNKVLCMDWCKDKRRIVSSSQDGKVIVWDSFTTNKEHAVTMPCTWVMACAYAPSGCAI-ACGGLDNKCSVY  133 (354)
T ss_dssp             CEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSSSCCCEEEECTTSSEE-EEESTTSEEEEE
T ss_pred             EEEEEecCCCCeEEEEEECCCCCEEEEEeCCCeEEEEECCCCCcceEEecCCCCEEEEEECCCCCEE-EEeeCCCCEEEE
Confidence            4456778999999999999999999999999999999999998888888888899999999999865 678999999999


Q ss_pred             ecCCcceeeeecCCCCCCCCCCccCCCCcceEEEEECCCCCEEEEecCCCcEEEEEcccceeeeeecCCccceEEEEEcC
Q 021247          131 DTATWNLIATLSIPRPEGLKPTDKSSSKKFVLSVAWSPDGRRIACGSMDGTISVFDVTRAKFLHHLEGHFMPVRSLVYSP  210 (315)
Q Consensus       131 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~s~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~  210 (315)
                      ++...+.....       ........|...|.+++|+|++..|++++.|+.|++||+++++.+..+.+|...|.++.|+|
T Consensus       134 ~~~~~~~~~~~-------~~~~~~~~h~~~v~~~~~~~~~~~l~t~s~D~~v~lwd~~~~~~~~~~~~h~~~v~~~~~~~  206 (354)
T 2pbi_B          134 PLTFDKNENMA-------AKKKSVAMHTNYLSACSFTNSDMQILTASGDGTCALWDVESGQLLQSFHGHGADVLCLDLAP  206 (354)
T ss_dssp             ECCCCTTCCSG-------GGCEEEEECSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECC
T ss_pred             EEecccccccc-------ccceeeeccCCcEEEEEEeCCCCEEEEEeCCCcEEEEeCCCCeEEEEEcCCCCCeEEEEEEe
Confidence            98643210000       00011224666799999999999999999999999999999999999999999999999998


Q ss_pred             C-CCcEEEEEeCCCeEEEEeCCCCeeEEEeecccccEEEEEEcCCCCeEEEEeCCCcEEEEecCccceehccccc--ccc
Q 021247          211 V-DPRVLFSASDDTHVHMYDAEGKSLVTAMSGHASWVLSVDASPDGAAITTGSSDRTVKLWDLNMRAAMQSMTNH--TDQ  287 (315)
Q Consensus       211 ~-~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~--~~~  287 (315)
                      . ++.+|++|+.|+.|++||+++++.+..+.+|...|.+++|+|++.+|++|+.|++|++||++..+.+..+..+  ...
T Consensus       207 ~~~g~~l~sgs~Dg~v~~wd~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~v~lwd~~~~~~~~~~~~~~~~~~  286 (354)
T 2pbi_B          207 SETGNTFVSGGCDKKAMVWDMRSGQCVQAFETHESDVNSVRYYPSGDAFASGSDDATCRLYDLRADREVAIYSKESIIFG  286 (354)
T ss_dssp             CSSCCEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCTTCCSC
T ss_pred             CCCCCEEEEEeCCCeEEEEECCCCcEEEEecCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEcCCCcccc
Confidence            5 4579999999999999999999999999999999999999999999999999999999999987665554433  347


Q ss_pred             eEEEEEeeCCCEEEEEeCCCcEEEeec
Q 021247          288 VWGVSFRPLGGRVVSVSDDKSISLYEY  314 (315)
Q Consensus       288 v~~~~~s~~~~~l~s~~~d~~i~i~~~  314 (315)
                      +.+++|+|+|.+|++++.|++|+|||+
T Consensus       287 ~~~~~~s~~g~~l~~g~~d~~i~vwd~  313 (354)
T 2pbi_B          287 ASSVDFSLSGRLLFAGYNDYTINVWDV  313 (354)
T ss_dssp             EEEEEECTTSSEEEEEETTSCEEEEET
T ss_pred             eeEEEEeCCCCEEEEEECCCcEEEEEC
Confidence            899999999999999999999999996

>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A

Probab=100.00  E-value=8.3e-41  Score=302.67  Aligned_cols=299  Identities=15%  Similarity=0.232  Sum_probs=245.8

Q ss_pred             hhccccceEEEEEeecCCCCCcEEEEeeCCCcEEEEcCCCCcceeecccccc---ceEEEEeCCC-CCEEEEeeCCCeEE
Q 021247           10 ENAHEESVWAVTWVPATETRPALLLTGSLDETVKLWRPDDMQLERTNTGHCL---GVVSVAAHPS-GIIAASASLDSFVR   85 (315)
Q Consensus        10 ~~~h~~~v~~v~~~~~~~~~~~~l~sgs~d~~v~~w~~~~~~~~~~~~~h~~---~v~~~~~~~~-g~~l~s~~~d~~i~   85 (315)
                      ..+|...|++++|+|.++   .++++|+.|+.|++|+..+.+....+.+|..   .|.+++|+|+ +.++++++.|+.|+
T Consensus       156 ~~~~~~~v~~~~~~~~~~---~~l~~~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~  232 (615)
T 1pgu_A          156 VSGHSQRINACHLKQSRP---MRSMTVGDDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKIS  232 (615)
T ss_dssp             CCSCSSCEEEEEECSSSS---CEEEEEETTTEEEEEETTTBEEEEEECSSSCTTCCEEEEEECSTTCCEEEEEETTCCEE
T ss_pred             eecCCccEEEEEECCCCC---cEEEEEeCCCcEEEEeCCCcceeeeecccCCCCceEEEEEECCCCCCEEEEEeCCCeEE
Confidence            468999999999999764   2799999999999999998888888889999   9999999999 99999999999999


Q ss_pred             EEECCCCceeEEe-e---CCcccEEEEEECCCCCeEEEEecCCCeEEEEecCCcceeeeecCCCCC--------------
Q 021247           86 VFDVDTNASIATL-E---ASPSEVWQMQFDPKGTTLAVAGGGSASVKLWDTATWNLIATLSIPRPE--------------  147 (315)
Q Consensus        86 ~w~~~~~~~~~~~-~---~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~--------------  147 (315)
                      +||+.+++.+..+ .   .|...|.+++|+ ++.. +++++.|+.|++||+++++.+..+..+...              
T Consensus       233 vwd~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~-l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  310 (615)
T 1pgu_A          233 CFDGKSGEFLKYIEDDQEPVQGGIFALSWL-DSQK-FATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVATGNG  310 (615)
T ss_dssp             EEETTTCCEEEECCBTTBCCCSCEEEEEES-SSSE-EEEEETTSEEEEEETTTTEEEEEEECCTTCGGGCEEEEEEEETT
T ss_pred             EEECCCCCEeEEecccccccCCceEEEEEc-CCCE-EEEEcCCCcEEEEECCCCcEEEEEcCCCCcccCceeEEEeCCCC
Confidence            9999999998888 5   788999999999 7665 567888999999999987766555433100              


Q ss_pred             ------------------CCCCCcc---------------------------------CCCCcceEEEEE----------
Q 021247          148 ------------------GLKPTDK---------------------------------SSSKKFVLSVAW----------  166 (315)
Q Consensus       148 ------------------~~~~~~~---------------------------------~~~~~~i~~~~~----------  166 (315)
                                        .......                                 ..+...|.+++|          
T Consensus       311 ~l~~~~~~g~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~l~~~~~dg~i~~w~~~~~~~~~~~~v~~~~~~~~~~l~~~~  390 (615)
T 1pgu_A          311 RIISLSLDGTLNFYELGHDEVLKTISGHNKGITALTVNPLISGSYDGRIMEWSSSSMHQDHSNLIVSLDNSKAQEYSSIS  390 (615)
T ss_dssp             EEEEEETTSCEEEEETTEEEEEEEECCCSSCEEEEETTTTEEEETTSCEEETTTTEEECCCCSCEEEEECCSTTCCEEEE
T ss_pred             eEEEEECCCCEEEEECCCCcEEEEEeCCCCCEEEEEecCcEEECCCCeEEEEEchhhcCcccCceEEEEECCCcEEEEEe
Confidence                              0000000                                 011122222222          


Q ss_pred             ------------------------CCC--------------------------------------CCEEEEecC-CCcEE
Q 021247          167 ------------------------SPD--------------------------------------GRRIACGSM-DGTIS  183 (315)
Q Consensus       167 ------------------------~~~--------------------------------------~~~l~~~s~-dg~i~  183 (315)
                                              +|+                                      +++|++++. |+.|+
T Consensus       391 ~d~~i~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~d~~i~  470 (615)
T 1pgu_A          391 WDDTLKVNGITKHEFGSQPKVASANNDGFTAVLTNDDDLLILQSFTGDIIKSVRLNSPGSAVSLSQNYVAVGLEEGNTIQ  470 (615)
T ss_dssp             TTTEEEETTEEEEECSSCEEEEEECSSSEEEEEETTSEEEEEETTTCCEEEEEECSSCEEEEEECSSEEEEEETTTSCEE
T ss_pred             CCCCEEEEEcccCcccCCceEEEEcCCCCEEEEeCCCceEEEeccCCceeeecccCCCceEEEEcCCEEEEeecCCCeEE
Confidence                                    111                                      455666666 77777


Q ss_pred             EEEcccceee-eeecCCccceEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCeeEEEeec-ccccEEEEEEcC--------
Q 021247          184 VFDVTRAKFL-HHLEGHFMPVRSLVYSPVDPRVLFSASDDTHVHMYDAEGKSLVTAMSG-HASWVLSVDASP--------  253 (315)
Q Consensus       184 i~d~~~~~~~-~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~-~~~~i~~~~~~~--------  253 (315)
                      +||+.+++.. ..+..|...|.+++|+| ++++|++++.|+.|++||++.++.+..+.+ |...|++++|+|        
T Consensus       471 ~~~~~~~~~~~~~~~~~~~~v~~~~~s~-~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~~  549 (615)
T 1pgu_A          471 VFKLSDLEVSFDLKTPLRAKPSYISISP-SETYIAAGDVMGKILLYDLQSREVKTSRWAFRTSKINAISWKPAEKGANEE  549 (615)
T ss_dssp             EEETTEEEEEEECSSCCSSCEEEEEECT-TSSEEEEEETTSCEEEEETTTTEEEECCSCCCSSCEEEEEECCCC------
T ss_pred             EEECCCccccccccCCccCceEEEEECC-CCCEEEEcCCCCeEEEeeCCCCcceeEeecCCCCceeEEEEcCcccccccc
Confidence            7777666554 56677899999999998 678999999999999999999998888887 999999999999        


Q ss_pred             --CCCeEEEEeCCCcEEEEecCcc-ceehcccccccceEEEEEeeCCCEEEEEeCCCcEEEeecC
Q 021247          254 --DGAAITTGSSDRTVKLWDLNMR-AAMQSMTNHTDQVWGVSFRPLGGRVVSVSDDKSISLYEYS  315 (315)
Q Consensus       254 --~~~~l~s~~~d~~i~iwd~~~~-~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~i~i~~~~  315 (315)
                        ++++|++++.|+.|++||+..+ +.+..+.+|...|++++|+|++. |++++.||+|++|++.
T Consensus       550 ~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~h~~~v~~l~~s~~~~-l~s~~~d~~v~iw~~~  613 (615)
T 1pgu_A          550 EIEEDLVATGSLDTNIFIYSVKRPMKIIKALNAHKDGVNNLLWETPST-LVSSGADACIKRWNVV  613 (615)
T ss_dssp             CCSCCEEEEEETTSCEEEEESSCTTCCEEETTSSTTCEEEEEEEETTE-EEEEETTSCEEEEEEC
T ss_pred             ccCCCEEEEEcCCCcEEEEECCCCceechhhhcCccceEEEEEcCCCC-eEEecCCceEEEEeee
Confidence              9999999999999999999987 67888899999999999999999 9999999999999974

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=100.00  E-value=2.7e-41  Score=315.58  Aligned_cols=293  Identities=23%  Similarity=0.351  Sum_probs=258.7

Q ss_pred             cchhhhhhccccceEEEEEeecCCCCCcEEEEeeCCCcEEEEcCCCCcceeeccccccceEEEEeCCCCCEEEEeeCCCe
Q 021247            4 AGLKSVENAHEESVWAVTWVPATETRPALLLTGSLDETVKLWRPDDMQLERTNTGHCLGVVSVAAHPSGIIAASASLDSF   83 (315)
Q Consensus         4 ~~~~~~~~~h~~~v~~v~~~~~~~~~~~~l~sgs~d~~v~~w~~~~~~~~~~~~~h~~~v~~~~~~~~g~~l~s~~~d~~   83 (315)
                      +.+.....+|.+.|++++|+|+++    +|++|+.||.|++|+..+++....+.+|..+|.++.|+|++.+|++++.|+.
T Consensus         3 l~~~~~~~~h~~~v~~i~~sp~~~----~la~~~~~g~v~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~   78 (814)
T 3mkq_A            3 LDIKKTFSNRSDRVKGIDFHPTEP----WVLTTLYSGRVEIWNYETQVEVRSIQVTETPVRAGKFIARKNWIIVGSDDFR   78 (814)
T ss_dssp             CCCEEEEEEECSCEEEEEECSSSS----EEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEEEGGGTEEEEEETTSE
T ss_pred             cccceeeecCCCceEEEEECCCCC----EEEEEeCCCEEEEEECCCCceEEEEecCCCcEEEEEEeCCCCEEEEEeCCCe
Confidence            445566789999999999999775    7999999999999999998888888899999999999999999999999999


Q ss_pred             EEEEECCCCceeEEeeCCcccEEEEEECCCCCeEEEEecCCCeEEEEecCCc-ceeeeecCCCCCCCCCCccCCCCcceE
Q 021247           84 VRVFDVDTNASIATLEASPSEVWQMQFDPKGTTLAVAGGGSASVKLWDTATW-NLIATLSIPRPEGLKPTDKSSSKKFVL  162 (315)
Q Consensus        84 i~~w~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~~d~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~  162 (315)
                      |++||+.+++.+..+..|...|.+++|+|+++.+ ++++.|+.|++||+.+. .....+.             .+...|.
T Consensus        79 i~vw~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l-~~~~~dg~i~vw~~~~~~~~~~~~~-------------~~~~~v~  144 (814)
T 3mkq_A           79 IRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYV-LSGSDDLTVKLWNWENNWALEQTFE-------------GHEHFVM  144 (814)
T ss_dssp             EEEEETTTCCEEEEEECCSSCEEEEEECSSSSEE-EEEETTSEEEEEEGGGTSEEEEEEE-------------CCSSCEE
T ss_pred             EEEEECCCCcEEEEEecCCCCEEEEEEeCCCCEE-EEEcCCCEEEEEECCCCceEEEEEc-------------CCCCcEE
Confidence            9999999999999999999999999999999865 57889999999999875 3333332             2445699


Q ss_pred             EEEECC-CCCEEEEecCCCcEEEEEcccceeeeeecCCc-cceEEEEEcCC-CCcEEEEEeCCCeEEEEeCCCCeeEEEe
Q 021247          163 SVAWSP-DGRRIACGSMDGTISVFDVTRAKFLHHLEGHF-MPVRSLVYSPV-DPRVLFSASDDTHVHMYDAEGKSLVTAM  239 (315)
Q Consensus       163 ~~~~~~-~~~~l~~~s~dg~i~i~d~~~~~~~~~~~~~~-~~v~~~~~~~~-~~~~l~s~~~d~~i~~wd~~~~~~~~~~  239 (315)
                      +++|+| +++.|++++.||.|++||+.+++....+..+. ..+..+.|+|. ++.++++++.|+.|++||.+.++.+..+
T Consensus       145 ~~~~~p~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~  224 (814)
T 3mkq_A          145 CVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATL  224 (814)
T ss_dssp             EEEEETTEEEEEEEEETTSEEEEEETTCSSCSEEEECCCTTCCCEEEECCSTTCCEEEEECTTSEEEEEETTTTEEEEEE
T ss_pred             EEEEEcCCCCEEEEEeCCCeEEEEECCCCcceeEEecCCCCCEEEEEEEECCCCCEEEEEeCCCEEEEEECCCCcEEEEE
Confidence            999999 88899999999999999998887766666554 88999999983 5679999999999999999999999999


Q ss_pred             ecccccEEEEEEcCCCCeEEEEeCCCcEEEEecCccceehcccccccceEEEEEeeCCCE-EEEEeCCCcEEEeec
Q 021247          240 SGHASWVLSVDASPDGAAITTGSSDRTVKLWDLNMRAAMQSMTNHTDQVWGVSFRPLGGR-VVSVSDDKSISLYEY  314 (315)
Q Consensus       240 ~~~~~~i~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~-l~s~~~d~~i~i~~~  314 (315)
                      .+|...|.+++|+|+++++++++.||.|++||+.+++....+..|...+++++|+|++.. +++++.|+.+.+|++
T Consensus       225 ~~~~~~v~~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~  300 (814)
T 3mkq_A          225 EGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKVEKTLNVGLERSWCIATHPTGRKNYIASGFDNGFTVLSL  300 (814)
T ss_dssp             ECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCSEEEEECCSSSSEEEEEECTTCGGGEEEEEETTEEEEEEC
T ss_pred             cCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEeecCCCcEEEEEEccCCCceEEEEEeCCCEEEEEc
Confidence            999999999999999999999999999999999999988888889999999999999874 355666777888875

>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A

Probab=100.00  E-value=8e-42  Score=287.55  Aligned_cols=305  Identities=19%  Similarity=0.302  Sum_probs=224.3

Q ss_pred             hhhhhhccccceEEEEEeecCCCCCcEEEEeeCCCcEEEEcCCCC----cceeeccccccceEEEEeCC--CCCEEEEee
Q 021247            6 LKSVENAHEESVWAVTWVPATETRPALLLTGSLDETVKLWRPDDM----QLERTNTGHCLGVVSVAAHP--SGIIAASAS   79 (315)
Q Consensus         6 ~~~~~~~h~~~v~~v~~~~~~~~~~~~l~sgs~d~~v~~w~~~~~----~~~~~~~~h~~~v~~~~~~~--~g~~l~s~~   79 (315)
                      ++.++.+|.+.|++++|+|.++    +|++|+.||.|++|+..+.    +....+.+|..+|.+++|+|  ++.+|++++
T Consensus         3 ~~~~~~gH~~~v~~~~~~~~~~----~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~d~~~l~s~~   78 (351)
T 3f3f_A            3 MQPFDSGHDDLVHDVVYDFYGR----HVATCSSDQHIKVFKLDKDTSNWELSDSWRAHDSSIVAIDWASPEYGRIIASAS   78 (351)
T ss_dssp             CCCEECCCSSCEEEEEECSSSS----EEEEEETTSEEEEEEECSSSCCEEEEEEEECCSSCEEEEEECCGGGCSEEEEEE
T ss_pred             ccccCcccccceeEEEEcCCCC----EEEEeeCCCeEEEEECCCCCCcceecceeccCCCcEEEEEEcCCCCCCEEEEEc
Confidence            3466789999999999999765    7999999999999998765    34556678999999999999  699999999


Q ss_pred             CCCeEEEEECCCC---------ceeEEeeCCcccEEEEEECCC--CCeEEEEecCCCeEEEEecCCcceeeeecCCCCCC
Q 021247           80 LDSFVRVFDVDTN---------ASIATLEASPSEVWQMQFDPK--GTTLAVAGGGSASVKLWDTATWNLIATLSIPRPEG  148 (315)
Q Consensus        80 ~d~~i~~w~~~~~---------~~~~~~~~~~~~v~~~~~~~~--~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~  148 (315)
                      .|+.|++||+.++         +.+..+..|...|.+++|+|+  +.. +++++.|+.|++||+++.+.+..+.......
T Consensus        79 ~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~-l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~  157 (351)
T 3f3f_A           79 YDKTVKLWEEDPDQEECSGRRWNKLCTLNDSKGSLYSVKFAPAHLGLK-LACLGNDGILRLYDALEPSDLRSWTLTSEMK  157 (351)
T ss_dssp             TTSCEEEEEECTTSCTTSSCSEEEEEEECCCSSCEEEEEECCGGGCSE-EEEEETTCEEEEEECSSTTCTTCCEEEEEEE
T ss_pred             CCCeEEEEecCCCcccccccCcceeeeecccCCceeEEEEcCCCCCcE-EEEecCCCcEEEecCCChHHhcccccccccc
Confidence            9999999999887         456778889999999999998  765 4678899999999998876554433211111


Q ss_pred             CCCCccCCCCcceEEEEECCC---CCEEEEecCCCcEEEEEccccee--eeeecCCccceEEEEEcCCCC---cEEEEEe
Q 021247          149 LKPTDKSSSKKFVLSVAWSPD---GRRIACGSMDGTISVFDVTRAKF--LHHLEGHFMPVRSLVYSPVDP---RVLFSAS  220 (315)
Q Consensus       149 ~~~~~~~~~~~~i~~~~~~~~---~~~l~~~s~dg~i~i~d~~~~~~--~~~~~~~~~~v~~~~~~~~~~---~~l~s~~  220 (315)
                      ........+...+.+++|+|+   +..|++++.++.+.+|+...++.  ...+.+|...|.+++|+|.++   .+|++++
T Consensus       158 ~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~p~~~~~~~~l~s~~  237 (351)
T 3f3f_A          158 VLSIPPANHLQSDFCLSWCPSRFSPEKLAVSALEQAIIYQRGKDGKLHVAAKLPGHKSLIRSISWAPSIGRWYQLIATGC  237 (351)
T ss_dssp             SCSCCCSSCSCCCEEEEECCCSSSCCEEEEEETTEEEEEEECTTSCEEEEEECCCCCSCEEEEEECCCSSCSSEEEEEEE
T ss_pred             ccccccCCcccceeEEEeccCCCCCcEEEEecCCCcEEEEccCCCceeeeeecCCCCcceeEEEECCCCCCcceEEEEEc
Confidence            111112245566899999997   89999999999998888876654  667788999999999999543   7999999


Q ss_pred             CCCeEEEEeCCCCeeEEEeecccccEEEEEEcCCCCeEEE----EeCCCcEEEEecCccceehcccccccceEEEEEeeC
Q 021247          221 DDTHVHMYDAEGKSLVTAMSGHASWVLSVDASPDGAAITT----GSSDRTVKLWDLNMRAAMQSMTNHTDQVWGVSFRPL  296 (315)
Q Consensus       221 ~d~~i~~wd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s----~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~  296 (315)
                      .|+.|++||++.+........+.........++....+..    +.....+.+|+....+.+..+.+|...|++++|+|+
T Consensus       238 ~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~  317 (351)
T 3f3f_A          238 KDGRIRIFKITEKLSPLASEESLTNSNMFDNSADVDMDAQGRSDSNTEEKAELQSNLQVELLSEHDDHNGEVWSVSWNLT  317 (351)
T ss_dssp             TTSCEEEEEEEECC---------------------------------------CCSEEEEEEEEECTTSSCEEEEEECSS
T ss_pred             CCCeEEEEeCCCCcCccccCCcccceeccCCCcccccccccccccccceeeeecccccccEEEEEecccccEEEEEEcCC
Confidence            9999999998765443333322222333333333333333    334555677777777788888899999999999999


Q ss_pred             CCEEEEEeCCCcEEEeecC
Q 021247          297 GGRVVSVSDDKSISLYEYS  315 (315)
Q Consensus       297 ~~~l~s~~~d~~i~i~~~~  315 (315)
                      +++|++++.||.|+||++.
T Consensus       318 ~~~l~s~~~dg~v~iw~~~  336 (351)
T 3f3f_A          318 GTILSSAGDDGKVRLWKAT  336 (351)
T ss_dssp             SCCEEEEETTSCEEEEEEC
T ss_pred             CCEEEEecCCCcEEEEecC
Confidence            9999999999999999974

>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*

Probab=100.00  E-value=1.1e-40  Score=292.51  Aligned_cols=293  Identities=23%  Similarity=0.304  Sum_probs=242.8

Q ss_pred             hhhccccce-EEEEEeecCCCCCcEEEEeeCCCcEEEEcCCCCcceeeccccccceEEEEeCCCCCEEEEeeCCCeEEEE
Q 021247            9 VENAHEESV-WAVTWVPATETRPALLLTGSLDETVKLWRPDDMQLERTNTGHCLGVVSVAAHPSGIIAASASLDSFVRVF   87 (315)
Q Consensus         9 ~~~~h~~~v-~~v~~~~~~~~~~~~l~sgs~d~~v~~w~~~~~~~~~~~~~h~~~v~~~~~~~~g~~l~s~~~d~~i~~w   87 (315)
                      .+.+|.+.| .++.+.  +    .+|++|+.||+|++||..+.+....+.+|..+|.+++++|++ ++++++.|++|++|
T Consensus       116 ~l~~h~~~v~~~~~~~--~----~~l~sgs~dg~i~vwd~~~~~~~~~~~~h~~~V~~l~~~~~~-~l~s~s~dg~i~vw  188 (464)
T 3v7d_B          116 TLRGHMTSVITCLQFE--D----NYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAHGG-ILVSGSTDRTVRVW  188 (464)
T ss_dssp             EEECCSSSCEEEEEEE--T----TEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECSTT-EEEEEETTSCEEEE
T ss_pred             EEcCCCCCcEEEEEEC--C----CEEEEEcCCCcEEEEECCCCcEEEEEeCCCcCEEEEEEcCCC-EEEEEeCCCCEEEE
Confidence            457898885 666663  2    379999999999999999999888999999999999999988 99999999999999


Q ss_pred             ECCCCceeEEeeCCcccEEEEEECCC-CCeEEEEecCCCeEEEEecCCcceeeeecCCCC----------CCCCCCccCC
Q 021247           88 DVDTNASIATLEASPSEVWQMQFDPK-GTTLAVAGGGSASVKLWDTATWNLIATLSIPRP----------EGLKPTDKSS  156 (315)
Q Consensus        88 ~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~----------~~~~~~~~~~  156 (315)
                      |+++++.+..+..|...|.+++|+|. +..++++++.|++|++||+++.+..........          ..........
T Consensus       189 d~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  268 (464)
T 3v7d_B          189 DIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRG  268 (464)
T ss_dssp             ETTTTEEEEEECCCSSCEEEEEEEESSSCEEEEEEETTSCEEEEECCCCCCC------CCSSEEESCGGGCTTEEEEECC
T ss_pred             ECCCCcEEEEECCCCCccEEEEEecCCCCCEEEEEcCCCcEEEeeCCCCcccccccccCCcceEeeccCCCeEEEEEccC
Confidence            99999999999999999999999853 234667889999999999987654322111100          0000011223


Q ss_pred             CCcceEEEEECCCCCEEEEecCCCcEEEEEcccceeeeeecCCccceEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCeeE
Q 021247          157 SKKFVLSVAWSPDGRRIACGSMDGTISVFDVTRAKFLHHLEGHFMPVRSLVYSPVDPRVLFSASDDTHVHMYDAEGKSLV  236 (315)
Q Consensus       157 ~~~~i~~~~~~~~~~~l~~~s~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~  236 (315)
                      +...+.++  +++++++++++.|+.|++||+++++.+..+.+|...|.++.|+| ++.++++++.|+.|++||+++++.+
T Consensus       269 ~~~~v~~~--~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~sg~~dg~i~vwd~~~~~~~  345 (464)
T 3v7d_B          269 HMASVRTV--SGHGNIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDH-ERKRCISASMDTTIRIWDLENGELM  345 (464)
T ss_dssp             CSSCEEEE--EEETTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEET-TTTEEEEEETTSCEEEEETTTTEEE
T ss_pred             ccceEEEE--cCCCCEEEEEeCCCeEEEEECCCCcEEEEecCCCCCEEEEEEcC-CCCEEEEEeCCCcEEEEECCCCcEE
Confidence            44445554  67889999999999999999999999999999999999999998 6779999999999999999999999


Q ss_pred             EEeecccccEEEEEEcCCCCeEEEEeCCCcEEEEecCccceehcccccccceEEEEEeeCCCEEEEEeCCCcEEEeecC
Q 021247          237 TAMSGHASWVLSVDASPDGAAITTGSSDRTVKLWDLNMRAAMQSMTNHTDQVWGVSFRPLGGRVVSVSDDKSISLYEYS  315 (315)
Q Consensus       237 ~~~~~~~~~i~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~i~i~~~~  315 (315)
                      ..+.+|...|.++.++  +.+|++++.||.|++||++........ .|...+..++|+|++.+|++++ |+.|+|||+.
T Consensus       346 ~~~~~h~~~v~~~~~~--~~~l~s~s~dg~v~vwd~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~~-dg~i~iwd~~  420 (464)
T 3v7d_B          346 YTLQGHTALVGLLRLS--DKFLVSAAADGSIRGWDANDYSRKFSY-HHTNLSAITTFYVSDNILVSGS-ENQFNIYNLR  420 (464)
T ss_dssp             EEECCCSSCEEEEEEC--SSEEEEEETTSEEEEEETTTCCEEEEE-ECTTCCCEEEEEECSSEEEEEE-TTEEEEEETT
T ss_pred             EEEeCCCCcEEEEEEc--CCEEEEEeCCCcEEEEECCCCceeeee-cCCCCccEEEEEeCCCEEEEec-CCeEEEEECC
Confidence            9999999999999997  479999999999999999987655443 3566778899999999999988 8999999963

>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A

Probab=100.00  E-value=2.8e-41  Score=284.36  Aligned_cols=276  Identities=14%  Similarity=0.126  Sum_probs=235.0

Q ss_pred             hhhhccccceEEEEEeecCCCCCcEEEEeeCCCcEEEEcCCCCc---ceeeccccccceEEEEeCCCCC-EEEEeeCCCe
Q 021247            8 SVENAHEESVWAVTWVPATETRPALLLTGSLDETVKLWRPDDMQ---LERTNTGHCLGVVSVAAHPSGI-IAASASLDSF   83 (315)
Q Consensus         8 ~~~~~h~~~v~~v~~~~~~~~~~~~l~sgs~d~~v~~w~~~~~~---~~~~~~~h~~~v~~~~~~~~g~-~l~s~~~d~~   83 (315)
                      .+..+|.+.|++++|+|.+.    +|++|+.|+.|++|+..+.+   ......+|...|.+++|+|++. ++++++.|+.
T Consensus         5 ~~~~~h~~~v~~~~~s~~~~----~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~   80 (342)
T 1yfq_A            5 QIEQAPKDYISDIKIIPSKS----LLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQIYVGTVQGE   80 (342)
T ss_dssp             ECSSCCSSCEEEEEEEGGGT----EEEEEETTSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEESSSEEEEEEETTSC
T ss_pred             ecccCCCCcEEEEEEcCCCC----EEEEEcCCCeEEEEEeCCCCccccceeeeecCCceEEEEECCCCCcEEEEEcCCCe
Confidence            34559999999999999765    79999999999999987665   2344558999999999999999 9999999999


Q ss_pred             EEEEEC-CCCceeEEeeC--CcccEEEEEECCCCCeEEEEecCCCeEEEEecCC---------cceeeeecCCCCCCCCC
Q 021247           84 VRVFDV-DTNASIATLEA--SPSEVWQMQFDPKGTTLAVAGGGSASVKLWDTAT---------WNLIATLSIPRPEGLKP  151 (315)
Q Consensus        84 i~~w~~-~~~~~~~~~~~--~~~~v~~~~~~~~~~~~~~~~~~d~~i~~~d~~~---------~~~~~~~~~~~~~~~~~  151 (315)
                      |++||+ .+++. ..+..  |...|.+++|+| ++. +++++.|+.|++||+++         .+.+..+          
T Consensus        81 i~~wd~~~~~~~-~~~~~~~~~~~v~~l~~~~-~~~-l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~----------  147 (342)
T 1yfq_A           81 ILKVDLIGSPSF-QALTNNEANLGICRICKYG-DDK-LIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNT----------  147 (342)
T ss_dssp             EEEECSSSSSSE-EECBSCCCCSCEEEEEEET-TTE-EEEEETTSEEEEECHHHHTTBCEEEEESCSSSS----------
T ss_pred             EEEEEeccCCce-EeccccCCCCceEEEEeCC-CCE-EEEEcCCCeEEEEcccccccccccccCCeeeEE----------
Confidence            999999 77654 66777  889999999999 664 56788999999999876         3332221          


Q ss_pred             CccCCCCcceEEEEECCCCCEEEEecCCCcEEEEEccc-ce--eeeeecCCccceEEEEEcCCCCcEEEEEeCCCeEEEE
Q 021247          152 TDKSSSKKFVLSVAWSPDGRRIACGSMDGTISVFDVTR-AK--FLHHLEGHFMPVRSLVYSPVDPRVLFSASDDTHVHMY  228 (315)
Q Consensus       152 ~~~~~~~~~i~~~~~~~~~~~l~~~s~dg~i~i~d~~~-~~--~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~~w  228 (315)
                          .+...+.+++|+|++  +++++.|+.|++||+++ +.  .......|...+.++.|+|.+++++++++.|+.|++|
T Consensus       148 ----~~~~~v~~~~~~~~~--l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~i~  221 (342)
T 1yfq_A          148 ----KVKNKIFTMDTNSSR--LIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVE  221 (342)
T ss_dssp             ----SSCCCEEEEEECSSE--EEEEESTTEEEEEESSCCTTCCCEEEECSCSSCEEEEEECSGGGCEEEEEETTSEEEEE
T ss_pred             ----eeCCceEEEEecCCc--EEEEeCCCeEEEEECCccccccceeeecCCCCceeEEEECCCCCCEEEEEecCCcEEEE
Confidence                244569999999887  99999999999999987 44  3334556788999999998335789999999999999


Q ss_pred             eCCCC------eeEEEeecccc---------cEEEEEEcCCCCeEEEEeCCCcEEEEecCccceehccccc-ccceEEEE
Q 021247          229 DAEGK------SLVTAMSGHAS---------WVLSVDASPDGAAITTGSSDRTVKLWDLNMRAAMQSMTNH-TDQVWGVS  292 (315)
Q Consensus       229 d~~~~------~~~~~~~~~~~---------~i~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~-~~~v~~~~  292 (315)
                      +.+..      +....+..|..         .|.+++|+|++++|++++.||.|++||+.+++.+..+..| ...|++++
T Consensus       222 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~~~  301 (342)
T 1yfq_A          222 FFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNFAKFNEDSVVKIA  301 (342)
T ss_dssp             ECCTTCCSTTCTTCEEEECCCCCTTCCSSCCCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEECCCCSSSEEEEEE
T ss_pred             EEcCCCcccccccceeeecccccccccccceeEEEEEEcCCCCEEEEecCCceEEEEcCccHhHhhhhhcccCCCceEec
Confidence            98876      66777777755         9999999999999999999999999999999999889888 99999999


Q ss_pred             EeeCCCEEEEEeCCCc
Q 021247          293 FRPLGGRVVSVSDDKS  308 (315)
Q Consensus       293 ~s~~~~~l~s~~~d~~  308 (315)
                        |++.+|++++.||+
T Consensus       302 --~~~~~l~s~s~Dg~  315 (342)
T 1yfq_A          302 --CSDNILCLATSDDT  315 (342)
T ss_dssp             --ECSSEEEEEEECTH
T ss_pred             --CCCCeEEEEecCCc
Confidence              99999999999998

>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1

Probab=100.00  E-value=7.4e-41  Score=291.35  Aligned_cols=274  Identities=26%  Similarity=0.445  Sum_probs=240.7

Q ss_pred             ccccceEEEEEeecCCCCCcEEEEeeCCCcEEEEcCCCCcceeeccccccceEEEEeCCCCCEEEEeeCCCeEEEEECCC
Q 021247           12 AHEESVWAVTWVPATETRPALLLTGSLDETVKLWRPDDMQLERTNTGHCLGVVSVAAHPSGIIAASASLDSFVRVFDVDT   91 (315)
Q Consensus        12 ~h~~~v~~v~~~~~~~~~~~~l~sgs~d~~v~~w~~~~~~~~~~~~~h~~~v~~~~~~~~g~~l~s~~~d~~i~~w~~~~   91 (315)
                      .|...|++++|.  +    .++++|+.||.|++||..+.+....+.+|..+|.++++  ++.++++|+.||+|++||+.+
T Consensus       131 ~~~~~v~~~~~d--~----~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~--~~~~l~sg~~dg~i~vwd~~~  202 (435)
T 1p22_A          131 ETSKGVYCLQYD--D----QKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQY--DERVIITGSSDSTVRVWDVNT  202 (435)
T ss_dssp             SSCCCEEEEECC--S----SEEEEEESSSCEEEEESSSCCEEEEECCCSSCEEEEEC--CSSEEEEEETTSCEEEEESSS
T ss_pred             CCCCcEEEEEEC--C----CEEEEEeCCCeEEEEeCCCCeEEEEEcCCCCcEEEEEE--CCCEEEEEcCCCeEEEEECCC
Confidence            567789999882  2    37999999999999999999888889999999999998  788999999999999999999


Q ss_pred             CceeEEeeCCcccEEEEEECCCCCeEEEEecCCCeEEEEecCCcceeeeecCCCCCCCCCCccCCCCcceEEEEECCCCC
Q 021247           92 NASIATLEASPSEVWQMQFDPKGTTLAVAGGGSASVKLWDTATWNLIATLSIPRPEGLKPTDKSSSKKFVLSVAWSPDGR  171 (315)
Q Consensus        92 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~  171 (315)
                      ++.+..+..|...|.+++|+++   .+++++.|+.|++||+++.+......          ....|...|.+++|  +++
T Consensus       203 ~~~~~~~~~h~~~v~~l~~~~~---~l~s~s~dg~i~vwd~~~~~~~~~~~----------~~~~~~~~v~~~~~--~~~  267 (435)
T 1p22_A          203 GEMLNTLIHHCEAVLHLRFNNG---MMVTCSKDRSIAVWDMASPTDITLRR----------VLVGHRAAVNVVDF--DDK  267 (435)
T ss_dssp             CCEEEEECCCCSCEEEEECCTT---EEEEEETTSCEEEEECSSSSCCEEEE----------EECCCSSCEEEEEE--ETT
T ss_pred             CcEEEEEcCCCCcEEEEEEcCC---EEEEeeCCCcEEEEeCCCCCCceeee----------EecCCCCcEEEEEe--CCC
Confidence            9999999999999999999753   56788999999999998765442111          11234556889998  788


Q ss_pred             EEEEecCCCcEEEEEcccceeeeeecCCccceEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCeeEEEeecccccEEEEEE
Q 021247          172 RIACGSMDGTISVFDVTRAKFLHHLEGHFMPVRSLVYSPVDPRVLFSASDDTHVHMYDAEGKSLVTAMSGHASWVLSVDA  251 (315)
Q Consensus       172 ~l~~~s~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~i~~~~~  251 (315)
                      +|++|+.||.|++||+++++.+..+.+|...+.++.|.   +.++++|+.|+.|++||+++++.+..+.+|...|.++++
T Consensus       268 ~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~---~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~  344 (435)
T 1p22_A          268 YIVSASGDRTIKVWNTSTCEFVRTLNGHKRGIACLQYR---DRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRF  344 (435)
T ss_dssp             EEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEEE---TTEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEC
T ss_pred             EEEEEeCCCeEEEEECCcCcEEEEEcCCCCcEEEEEeC---CCEEEEEeCCCeEEEEECCCCCEEEEEeCCcCcEEEEEe
Confidence            99999999999999999999999999999999999985   469999999999999999999999999999999999998


Q ss_pred             cCCCCeEEEEeCCCcEEEEecCccc---------eehcccccccceEEEEEeeCCCEEEEEeCCCcEEEeecC
Q 021247          252 SPDGAAITTGSSDRTVKLWDLNMRA---------AMQSMTNHTDQVWGVSFRPLGGRVVSVSDDKSISLYEYS  315 (315)
Q Consensus       252 ~~~~~~l~s~~~d~~i~iwd~~~~~---------~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~i~i~~~~  315 (315)
                        ++.+|++|+.||.|++||+..+.         .+..+.+|...|++++|  ++.+|++++.||+|+|||+.
T Consensus       345 --~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~l~s~s~Dg~i~iwd~~  413 (435)
T 1p22_A          345 --DNKRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQF--DEFQIVSSSHDDTILIWDFL  413 (435)
T ss_dssp             --CSSEEEEEETTSCEEEEEHHHHTSTTSCTTTTEEEEECCCSSCCCCEEE--CSSCEEECCSSSEEEEEC--
T ss_pred             --cCCEEEEEeCCCcEEEEECCCCCCccccccchheeeccCCCCCeEEEEe--CCCEEEEEeCCCEEEEEECC
Confidence              67899999999999999998766         67778899999999999  67899999999999999973

>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}

Probab=100.00  E-value=8.5e-41  Score=282.26  Aligned_cols=249  Identities=25%  Similarity=0.434  Sum_probs=209.5

Q ss_pred             cceeecccccc-ceEEEEeCCCCCEEEEeeCCCeEEEEECCCCceeE---EeeCCcccEEEEEECCCCCeEEEEecCCCe
Q 021247           51 QLERTNTGHCL-GVVSVAAHPSGIIAASASLDSFVRVFDVDTNASIA---TLEASPSEVWQMQFDPKGTTLAVAGGGSAS  126 (315)
Q Consensus        51 ~~~~~~~~h~~-~v~~~~~~~~g~~l~s~~~d~~i~~w~~~~~~~~~---~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~  126 (315)
                      ++...+.+|.. .|.+++|+|+|.+|++++.|++|++||+.++....   ....|...|.+++|+|+++++ ++++.|++
T Consensus         6 ~~~~~~~~h~~~~v~~l~~sp~g~~las~~~D~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l-~s~s~D~~   84 (345)
T 3fm0_A            6 VLLGRVPAHPDSRCWFLAWNPAGTLLASCGGDRRIRIWGTEGDSWICKSVLSEGHQRTVRKVAWSPCGNYL-ASASFDAT   84 (345)
T ss_dssp             EEEEEECCSTTSCEEEEEECTTSSCEEEEETTSCEEEEEEETTEEEEEEEECSSCSSCEEEEEECTTSSEE-EEEETTSC
T ss_pred             EEeeeecCCCCCcEEEEEECCCCCEEEEEcCCCeEEEEEcCCCcceeeeeeccccCCcEEEEEECCCCCEE-EEEECCCc
Confidence            34566778987 89999999999999999999999999998876432   235788999999999998855 67889999


Q ss_pred             EEEEecCCcce--eeeecCCCCCCCCCCccCCCCcceEEEEECCCCCEEEEecCCCcEEEEEcccc---eeeeeecCCcc
Q 021247          127 VKLWDTATWNL--IATLSIPRPEGLKPTDKSSSKKFVLSVAWSPDGRRIACGSMDGTISVFDVTRA---KFLHHLEGHFM  201 (315)
Q Consensus       127 i~~~d~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~s~dg~i~i~d~~~~---~~~~~~~~~~~  201 (315)
                      +++||....+.  +..+             ..|...|.+++|+|++++|++|+.|+.|++||+.++   ..+..+.+|..
T Consensus        85 v~iw~~~~~~~~~~~~~-------------~~h~~~v~~v~~sp~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~h~~  151 (345)
T 3fm0_A           85 TCIWKKNQDDFECVTTL-------------EGHENEVKSVAWAPSGNLLATCSRDKSVWVWEVDEEDEYECVSVLNSHTQ  151 (345)
T ss_dssp             EEEEEECCC-EEEEEEE-------------CCCSSCEEEEEECTTSSEEEEEETTSCEEEEEECTTSCEEEEEEECCCCS
T ss_pred             EEEEEccCCCeEEEEEc-------------cCCCCCceEEEEeCCCCEEEEEECCCeEEEEECCCCCCeEEEEEecCcCC
Confidence            99999876543  2222             235567999999999999999999999999999765   34566788999


Q ss_pred             ceEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCe--eEEEeecccccEEEEEEcCCCCeEEEEeCCCcEEEEecCcc----
Q 021247          202 PVRSLVYSPVDPRVLFSASDDTHVHMYDAEGKS--LVTAMSGHASWVLSVDASPDGAAITTGSSDRTVKLWDLNMR----  275 (315)
Q Consensus       202 ~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~--~~~~~~~~~~~i~~~~~~~~~~~l~s~~~d~~i~iwd~~~~----  275 (315)
                      .|.+++|+| ++.+|++++.|+.|++||.+.+.  ....+.+|...|.+++|+|++++|++|+.|++|++|+....    
T Consensus       152 ~v~~~~~~p-~~~~l~s~s~d~~i~~w~~~~~~~~~~~~~~~h~~~v~~l~~sp~g~~l~s~s~D~~v~iW~~~~~~~~~  230 (345)
T 3fm0_A          152 DVKHVVWHP-SQELLASASYDDTVKLYREEEDDWVCCATLEGHESTVWSLAFDPSGQRLASCSDDRTVRIWRQYLPGNEQ  230 (345)
T ss_dssp             CEEEEEECS-SSSCEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEEECTTCTT
T ss_pred             CeEEEEECC-CCCEEEEEeCCCcEEEEEecCCCEEEEEEecCCCCceEEEEECCCCCEEEEEeCCCeEEEeccccCCCCc
Confidence            999999999 67799999999999999988764  34677899999999999999999999999999999996322    


Q ss_pred             -----------ceehcccc-cccceEEEEEeeCCCEEEEEeCCCcEEEeec
Q 021247          276 -----------AAMQSMTN-HTDQVWGVSFRPLGGRVVSVSDDKSISLYEY  314 (315)
Q Consensus       276 -----------~~~~~~~~-~~~~v~~~~~s~~~~~l~s~~~d~~i~i~~~  314 (315)
                                 +.+.++.+ |...|++++|+|++..|++++.|+.|++|+.
T Consensus       231 ~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~i~vw~~  281 (345)
T 3fm0_A          231 GVACSGSDPSWKCICTLSGFHSRTIYDIAWCQLTGALATACGDDAIRVFQE  281 (345)
T ss_dssp             CCCCC---CEEEEEEEECSSCSSCEEEEEECTTTCCEEEEETTSCEEEEEE
T ss_pred             cceeeccCCccceeEEecCCCCCcEEEEEEecCCCEEEEEeCCCeEEEEEe
Confidence                       12223333 7889999999999999999999999999985

>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}

Probab=100.00  E-value=1.4e-40  Score=286.41  Aligned_cols=290  Identities=20%  Similarity=0.256  Sum_probs=236.1

Q ss_pred             hhhhhccccceEEEEEee-cCCCCCcEEEEeeCCCcEEEEcCCCCcceeec-------------cccccceEEEEeCC-C
Q 021247            7 KSVENAHEESVWAVTWVP-ATETRPALLLTGSLDETVKLWRPDDMQLERTN-------------TGHCLGVVSVAAHP-S   71 (315)
Q Consensus         7 ~~~~~~h~~~v~~v~~~~-~~~~~~~~l~sgs~d~~v~~w~~~~~~~~~~~-------------~~h~~~v~~~~~~~-~   71 (315)
                      ..+..+|.+.|++++|+| .++    +|++|+.||.|++|+..+.+.....             .+|...|.+++|+| +
T Consensus        36 ~~~~~~h~~~v~~~~~s~~~~~----~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~  111 (408)
T 4a11_B           36 RDVERIHGGGINTLDIEPVEGR----YMLSGGSDGVIVLYDLENSSRQSYYTCKAVCSIGRDHPDVHRYSVETVQWYPHD  111 (408)
T ss_dssp             EEECCCCSSCEEEEEECTTTCC----EEEEEETTSCEEEEECCCCSSSSCEEECEEEEECTTCTTCCSSCEEEEEECTTC
T ss_pred             eeeeeccCCcEEEEEEecCCCC----EEEEEcCCCeEEEEECCCCcccceEeccccccccccccccCCCcEEEEEEccCC
Confidence            345678999999999999 654    7999999999999999876654433             35999999999999 7


Q ss_pred             CCEEEEeeCCCeEEEEECCCCceeEEeeCCcccEEEEEECCCCC--eEEEEecCCCeEEEEecCCcceeeeecCCCCCCC
Q 021247           72 GIIAASASLDSFVRVFDVDTNASIATLEASPSEVWQMQFDPKGT--TLAVAGGGSASVKLWDTATWNLIATLSIPRPEGL  149 (315)
Q Consensus        72 g~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~v~~~~~~~~~~--~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~  149 (315)
                      +.++++++.|+.|++||+.+++....+. +...+..+.++|.+.  .++++++.++.|++||+++++.+..+.       
T Consensus       112 ~~~l~s~~~d~~i~iwd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~-------  183 (408)
T 4a11_B          112 TGMFTSSSFDKTLKVWDTNTLQTADVFN-FEETVYSHHMSPVSTKHCLVAVGTRGPKVQLCDLKSGSCSHILQ-------  183 (408)
T ss_dssp             TTCEEEEETTSEEEEEETTTTEEEEEEE-CSSCEEEEEECSSCSSCCEEEEEESSSSEEEEESSSSCCCEEEC-------
T ss_pred             CcEEEEEeCCCeEEEeeCCCCccceecc-CCCceeeeEeecCCCCCcEEEEEcCCCeEEEEeCCCcceeeeec-------
Confidence            7899999999999999999998887776 567889999998643  256788899999999999877665553       


Q ss_pred             CCCccCCCCcceEEEEECCCCC-EEEEecCCCcEEEEEcccce-eeeee---------------cCCccceEEEEEcCCC
Q 021247          150 KPTDKSSSKKFVLSVAWSPDGR-RIACGSMDGTISVFDVTRAK-FLHHL---------------EGHFMPVRSLVYSPVD  212 (315)
Q Consensus       150 ~~~~~~~~~~~i~~~~~~~~~~-~l~~~s~dg~i~i~d~~~~~-~~~~~---------------~~~~~~v~~~~~~~~~  212 (315)
                            .+...|.+++|+|+++ .|++++.||.|++||++++. ....+               ..|...|.+++|+| +
T Consensus       184 ------~~~~~v~~~~~~~~~~~ll~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~  256 (408)
T 4a11_B          184 ------GHRQEILAVSWSPRYDYILATASADSRVKLWDVRRASGCLITLDQHNGKKSQAVESANTAHNGKVNGLCFTS-D  256 (408)
T ss_dssp             ------CCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTCSSCCSEECCTTTTCSCCCTTTSSCSCSSCEEEEEECT-T
T ss_pred             ------CCCCcEEEEEECCCCCcEEEEEcCCCcEEEEECCCCCcccccccccccccceeeccccccccCceeEEEEcC-C
Confidence                  2445699999999998 48899999999999997664 23332               56888999999999 6


Q ss_pred             CcEEEEEeCCCeEEEEeCCCCeeEEEeecc-----cccEEEEEEcCCCCeEEEEeCCCcEEEEecCccceehcccccccc
Q 021247          213 PRVLFSASDDTHVHMYDAEGKSLVTAMSGH-----ASWVLSVDASPDGAAITTGSSDRTVKLWDLNMRAAMQSMTNHTDQ  287 (315)
Q Consensus       213 ~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~-----~~~i~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~  287 (315)
                      ++++++++.|+.|++||++.++.......+     ...+........+..+++++.|+.|++||+.+++.+..+.+|...
T Consensus       257 ~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~  336 (408)
T 4a11_B          257 GLHLLTVGTDNRMRLWNSSNGENTLVNYGKVCNNSKKGLKFTVSCGCSSEFVFVPYGSTIAVYTVYSGEQITMLKGHYKT  336 (408)
T ss_dssp             SSEEEEEETTSCEEEEETTTCCBCCCCCCCCCCCCSSCCCCEECCSSSSCEEEEEETTEEEEEETTTCCEEEEECCCSSC
T ss_pred             CCEEEEecCCCeEEEEECCCCccceeccccccccccccceeEEecCCCceEEEEecCCEEEEEECcCCcceeeeccCCCe
Confidence            789999999999999999877654333221     111111222233456777788999999999999999999999999


Q ss_pred             eEEEEEeeCCCEEEEEeCCCcEEEeecC
Q 021247          288 VWGVSFRPLGGRVVSVSDDKSISLYEYS  315 (315)
Q Consensus       288 v~~~~~s~~~~~l~s~~~d~~i~i~~~~  315 (315)
                      |++++|+|++++|++++.||.|++|++.
T Consensus       337 v~~~~~s~~~~~l~s~~~dg~i~iw~~~  364 (408)
T 4a11_B          337 VDCCVFQSNFQELYSGSRDCNILAWVPS  364 (408)
T ss_dssp             EEEEEEETTTTEEEEEETTSCEEEEEEC
T ss_pred             EEEEEEcCCCCEEEEECCCCeEEEEeCC
Confidence            9999999999999999999999999974

>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A

Probab=100.00  E-value=1.3e-40  Score=279.43  Aligned_cols=284  Identities=17%  Similarity=0.251  Sum_probs=238.7

Q ss_pred             ccccceEEEEEeecCCCCCcEEEEeeCCCcEEEEcCCCCcceeeccccccceEEEEeCCCCCEEEEeeCCCeEEEEECCC
Q 021247           12 AHEESVWAVTWVPATETRPALLLTGSLDETVKLWRPDDMQLERTNTGHCLGVVSVAAHPSGIIAASASLDSFVRVFDVDT   91 (315)
Q Consensus        12 ~h~~~v~~v~~~~~~~~~~~~l~sgs~d~~v~~w~~~~~~~~~~~~~h~~~v~~~~~~~~g~~l~s~~~d~~i~~w~~~~   91 (315)
                      .|.++|.+++|+|++.    +++++..++.+..|............+|..+|.+++|+|++.++++++ |+.|++||+.+
T Consensus         7 ~~~~~v~~~~~s~dg~----~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~-dg~i~iw~~~~   81 (337)
T 1gxr_A            7 MGSKPAYSFHVTADGQ----MQPVPFPPDALIGPGIPRHARQINTLNHGEVVCAVTISNPTRHVYTGG-KGCVKVWDISH   81 (337)
T ss_dssp             EEEEECCEEEECSSSC----EEECCCCTTSSSSTTCCSEEEEEEEECCSSCCCEEEECSSSSEEEEEC-BSEEEEEETTS
T ss_pred             ccCCceeEEEECCCCC----EEEeecCCCcEeccccCCccccceeccCCCceEEEEEecCCcEEEEcC-CCeEEEEECCC
Confidence            4678999999999886    577777777777776544433334457999999999999999999998 99999999987


Q ss_pred             Cce---eEEee--CCcccEEEEEECCCCCeEEEEecCCCeEEEEecCCcceeeeecCCCCCCCCCCccCCCCcceEEEEE
Q 021247           92 NAS---IATLE--ASPSEVWQMQFDPKGTTLAVAGGGSASVKLWDTATWNLIATLSIPRPEGLKPTDKSSSKKFVLSVAW  166 (315)
Q Consensus        92 ~~~---~~~~~--~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~  166 (315)
                      +..   +..+.  .+...+.+++|+|+++.+ ++++.|+.|++||+++.+.......           ..+...+.+++|
T Consensus        82 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l-~~~~~d~~i~~~d~~~~~~~~~~~~-----------~~~~~~i~~~~~  149 (337)
T 1gxr_A           82 PGNKSPVSQLDCLNRDNYIRSCKLLPDGCTL-IVGGEASTLSIWDLAAPTPRIKAEL-----------TSSAPACYALAI  149 (337)
T ss_dssp             TTCCSCSEEEECSCTTSBEEEEEECTTSSEE-EEEESSSEEEEEECCCC--EEEEEE-----------ECSSSCEEEEEE
T ss_pred             CCceeeeecccccCCCCcEEEEEEcCCCCEE-EEEcCCCcEEEEECCCCCcceeeec-----------ccCCCceEEEEE
Confidence            653   33333  678899999999998865 5678899999999987663222211           123445899999


Q ss_pred             CCCCCEEEEecCCCcEEEEEcccceeeeeecCCccceEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCeeEEEeecccccE
Q 021247          167 SPDGRRIACGSMDGTISVFDVTRAKFLHHLEGHFMPVRSLVYSPVDPRVLFSASDDTHVHMYDAEGKSLVTAMSGHASWV  246 (315)
Q Consensus       167 ~~~~~~l~~~s~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~i  246 (315)
                      +|++++|++++.|+.|++||+++++....+..|...+.++.|+| +++++++++.|+.|++||++.++.+..+. +...+
T Consensus       150 ~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~dg~i~~~d~~~~~~~~~~~-~~~~v  227 (337)
T 1gxr_A          150 SPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISN-DGTKLWTGGLDNTVRSWDLREGRQLQQHD-FTSQI  227 (337)
T ss_dssp             CTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECT-TSSEEEEEETTSEEEEEETTTTEEEEEEE-CSSCE
T ss_pred             CCCCCEEEEEeCCCcEEEEeCCCCceeeeeecccCceEEEEECC-CCCEEEEEecCCcEEEEECCCCceEeeec-CCCce
Confidence            99999999999999999999999999999999999999999999 67899999999999999999888776654 67889


Q ss_pred             EEEEEcCCCCeEEEEeCCCcEEEEecCccceehcccccccceEEEEEeeCCCEEEEEeCCCcEEEeecC
Q 021247          247 LSVDASPDGAAITTGSSDRTVKLWDLNMRAAMQSMTNHTDQVWGVSFRPLGGRVVSVSDDKSISLYEYS  315 (315)
Q Consensus       247 ~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~i~i~~~~  315 (315)
                      .+++|+|+++++++++.|+.|++||++..+.. .+..|...+.+++|+|++++|++++.||.|++|++.
T Consensus       228 ~~~~~s~~~~~l~~~~~~~~i~~~~~~~~~~~-~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~~~~  295 (337)
T 1gxr_A          228 FSLGYCPTGEWLAVGMESSNVEVLHVNKPDKY-QLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTP  295 (337)
T ss_dssp             EEEEECTTSSEEEEEETTSCEEEEETTSSCEE-EECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETT
T ss_pred             EEEEECCCCCEEEEEcCCCcEEEEECCCCCeE-EEcCCccceeEEEECCCCCEEEEecCCCcEEEEECC
Confidence            99999999999999999999999999987654 466888999999999999999999999999999963

>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*

Probab=100.00  E-value=2.7e-40  Score=276.19  Aligned_cols=247  Identities=24%  Similarity=0.363  Sum_probs=216.0

Q ss_pred             ceeeccccccceEEEEeCCCC-CEEEEeeCCCeEEEEECCCC-----ceeEEeeCCcccEEEEEECCCCCeEEEEecCCC
Q 021247           52 LERTNTGHCLGVVSVAAHPSG-IIAASASLDSFVRVFDVDTN-----ASIATLEASPSEVWQMQFDPKGTTLAVAGGGSA  125 (315)
Q Consensus        52 ~~~~~~~h~~~v~~~~~~~~g-~~l~s~~~d~~i~~w~~~~~-----~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~  125 (315)
                      +...+.+|..+|.+++++|++ .+|++++.|++|++|++...     ..+..+..|...|.+++|+|+++++ ++++.|+
T Consensus         9 l~~~l~gH~~~V~~l~~~~~~~~~l~s~s~D~~v~~W~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l-~s~s~D~   87 (319)
T 3frx_A            9 LRGTLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTADGAYA-LSASWDK   87 (319)
T ss_dssp             EEEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEEEEEETTEEEEEEEEEECCSSCEEEEEECTTSSEE-EEEETTS
T ss_pred             EEEEEccccceEEEEEccCCCccEEEEecCCccEEEecCCCCCccccccceEEeCCcccEEEEEECCCCCEE-EEEeCCC
Confidence            445678999999999999965 89999999999999998642     3456788999999999999998855 6888999


Q ss_pred             eEEEEecCCcceeeeecCCCCCCCCCCccCCCCcceEEEEECCCCCEEEEecCCCcEEEEEcccceeeeeecCCccceEE
Q 021247          126 SVKLWDTATWNLIATLSIPRPEGLKPTDKSSSKKFVLSVAWSPDGRRIACGSMDGTISVFDVTRAKFLHHLEGHFMPVRS  205 (315)
Q Consensus       126 ~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~s~dg~i~i~d~~~~~~~~~~~~~~~~v~~  205 (315)
                      +|++||+++++.+..+.             .|...|.+++|+|++.+|++|+.|+.|++||++ ++.+..+.+|...|.+
T Consensus        88 ~v~~wd~~~~~~~~~~~-------------~h~~~v~~~~~~~~~~~l~s~s~D~~i~vwd~~-~~~~~~~~~h~~~v~~  153 (319)
T 3frx_A           88 TLRLWDVATGETYQRFV-------------GHKSDVMSVDIDKKASMIISGSRDKTIKVWTIK-GQCLATLLGHNDWVSQ  153 (319)
T ss_dssp             EEEEEETTTTEEEEEEE-------------CCSSCEEEEEECTTSCEEEEEETTSCEEEEETT-SCEEEEECCCSSCEEE
T ss_pred             EEEEEECCCCCeeEEEc-------------cCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECC-CCeEEEEeccCCcEEE
Confidence            99999999988776653             345569999999999999999999999999996 4567788899999999


Q ss_pred             EEEcCC-----CCcEEEEEeCCCeEEEEeCCCCeeEEEeecccccEEEEEEcCCCCeEEEEeCCCcEEEEecCccceehc
Q 021247          206 LVYSPV-----DPRVLFSASDDTHVHMYDAEGKSLVTAMSGHASWVLSVDASPDGAAITTGSSDRTVKLWDLNMRAAMQS  280 (315)
Q Consensus       206 ~~~~~~-----~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~  280 (315)
                      +.|.|.     ++..+++++.|+.|++||++..+....+.+|...|.+++|+|++++|++|+.|++|++||+..++.+.+
T Consensus       154 ~~~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~~~dg~i~iwd~~~~~~~~~  233 (319)
T 3frx_A          154 VRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYT  233 (319)
T ss_dssp             EEECCC------CCEEEEEETTSCEEEEETTTTEEEEEECCCCSCEEEEEECTTSSEEEEEETTCEEEEEETTTTEEEEE
T ss_pred             EEEccCCCCCCCccEEEEEeCCCEEEEEECCcchhheeecCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEE
Confidence            999984     344899999999999999999988888999999999999999999999999999999999999888887


Q ss_pred             ccccccceEEEEEeeCCCEEEEEeCCCcEEEeecC
Q 021247          281 MTNHTDQVWGVSFRPLGGRVVSVSDDKSISLYEYS  315 (315)
Q Consensus       281 ~~~~~~~v~~~~~s~~~~~l~s~~~d~~i~i~~~~  315 (315)
                      +..+ ..|.+++|+|++.+|++++.+ .+++|++.
T Consensus       234 ~~~~-~~v~~~~~sp~~~~la~~~~~-~i~v~~~~  266 (319)
T 3frx_A          234 LSAQ-DEVFSLAFSPNRYWLAAATAT-GIKVFSLD  266 (319)
T ss_dssp             EECC-SCEEEEEECSSSSEEEEEETT-EEEEEEET
T ss_pred             ecCC-CcEEEEEEcCCCCEEEEEcCC-CcEEEEeC
Confidence            7654 689999999999988887755 59999863

>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A

Probab=100.00  E-value=6.7e-42  Score=285.57  Aligned_cols=248  Identities=23%  Similarity=0.373  Sum_probs=202.6

Q ss_pred             eccccccceEEEEeCCCCCEEEEeeCCCeEEEEECCCCc--eeEEeeCCcccEEEEEECCC--CCeEEEEecCCCeEEEE
Q 021247           55 TNTGHCLGVVSVAAHPSGIIAASASLDSFVRVFDVDTNA--SIATLEASPSEVWQMQFDPK--GTTLAVAGGGSASVKLW  130 (315)
Q Consensus        55 ~~~~h~~~v~~~~~~~~g~~l~s~~~d~~i~~w~~~~~~--~~~~~~~~~~~v~~~~~~~~--~~~~~~~~~~d~~i~~~  130 (315)
                      .+.+|..+|.+++|+|+|++|++++.|++|++||+.++.  .+..+..|..+|++++|+|.  ++ ++++++.|++|++|
T Consensus         8 ~~~~H~~~V~~v~~s~~g~~lasgs~D~~v~lwd~~~~~~~~~~~l~gH~~~V~~v~~~~~~~~~-~l~s~s~D~~v~iW   86 (316)
T 3bg1_A            8 VDTSHEDMIHDAQMDYYGTRLATCSSDRSVKIFDVRNGGQILIADLRGHEGPVWQVAWAHPMYGN-ILASCSYDRKVIIW   86 (316)
T ss_dssp             ------CCEEEEEECGGGCEEEEEETTTEEEEEEEETTEEEEEEEEECCSSCEEEEEECCGGGSS-CEEEEETTSCEEEE
T ss_pred             ecccccCeEEEeeEcCCCCEEEEEeCCCeEEEEEecCCCcEEEEEEcCCCccEEEEEeCCCCCCC-EEEEEECCCEEEEE
Confidence            356899999999999999999999999999999998775  45678899999999999753  45 56788999999999


Q ss_pred             ecCCcceeeeecCCCCCCCCCCccCCCCcceEEEEECCC--CCEEEEecCCCcEEEEEcccce---eeeeecCCccceEE
Q 021247          131 DTATWNLIATLSIPRPEGLKPTDKSSSKKFVLSVAWSPD--GRRIACGSMDGTISVFDVTRAK---FLHHLEGHFMPVRS  205 (315)
Q Consensus       131 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~--~~~l~~~s~dg~i~i~d~~~~~---~~~~~~~~~~~v~~  205 (315)
                      |+++++......           ...|...|.+++|+|+  +.+|++|+.|+.|++||++.+.   ....+.+|...+.+
T Consensus        87 d~~~~~~~~~~~-----------~~~h~~~V~~v~~~p~~~g~~lasgs~D~~i~lwd~~~~~~~~~~~~~~~h~~~v~~  155 (316)
T 3bg1_A           87 REENGTWEKSHE-----------HAGHDSSVNSVCWAPHDYGLILACGSSDGAISLLTYTGEGQWEVKKINNAHTIGCNA  155 (316)
T ss_dssp             CCSSSCCCEEEE-----------ECCCSSCCCEEEECCTTTCSCEEEECSSSCEEEEEECSSSCEEECCBTTSSSSCBCC
T ss_pred             ECCCCcceEEEE-----------ccCCCCceEEEEECCCCCCcEEEEEcCCCCEEEEecCCCCCcceeeeeccccCCcce
Confidence            998754221111           1234556999999997  7899999999999999998653   23456788899999


Q ss_pred             EEEcCCC----------------CcEEEEEeCCCeEEEEeCCCC---eeEEEeecccccEEEEEEcCCC----CeEEEEe
Q 021247          206 LVYSPVD----------------PRVLFSASDDTHVHMYDAEGK---SLVTAMSGHASWVLSVDASPDG----AAITTGS  262 (315)
Q Consensus       206 ~~~~~~~----------------~~~l~s~~~d~~i~~wd~~~~---~~~~~~~~~~~~i~~~~~~~~~----~~l~s~~  262 (315)
                      +.|+|..                +++|++++.|+.|++||.+..   ..+..+.+|..+|.+++|+|++    ++|++++
T Consensus       156 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~l~~h~~~V~~v~~sp~~~~~~~~las~s  235 (316)
T 3bg1_A          156 VSWAPAVVPGSLIDHPSGQKPNYIKRFASGGCDNLIKLWKEEEDGQWKEEQKLEAHSDWVRDVAWAPSIGLPTSTIASCS  235 (316)
T ss_dssp             CEECCCCCC------CCSCCCCCCCBEECCBTTSBCCEEEECTTSCEEEEECCBCCSSCEEEEECCCCSSCSCCEEEEEE
T ss_pred             EEEccccCCccccccccccCccccceEEEecCCCeEEEEEeCCCCccceeeecccCCCceEEEEecCCCCCCCceEEEEc
Confidence            9999852                368999999999999998754   4566788999999999999986    7899999


Q ss_pred             CCCcEEEEecCccc----eehcccccccceEEEEEeeCCCEEEEEeCCCcEEEeec
Q 021247          263 SDRTVKLWDLNMRA----AMQSMTNHTDQVWGVSFRPLGGRVVSVSDDKSISLYEY  314 (315)
Q Consensus       263 ~d~~i~iwd~~~~~----~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~i~i~~~  314 (315)
                      .|++|++|++....    ....+..|.+.|++++|+|++++|++++.|++|+||+.
T Consensus       236 ~D~~v~iw~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~g~~las~~~D~~v~lw~~  291 (316)
T 3bg1_A          236 QDGRVFIWTCDDASSNTWSPKLLHKFNDVVWHVSWSITANILAVSGGDNKVTLWKE  291 (316)
T ss_dssp             TTCEEEEEECSSTTCCCCBCCEEEECSSCEEEEEECTTTCCEEEEESSSCEEEEEE
T ss_pred             CCCeEEEEEccCccccchhhhhhhcCCCcEEEEEEcCCCCEEEEEcCCCeEEEEEE
Confidence            99999999987621    22345678899999999999999999999999999985

>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A

Probab=100.00  E-value=2e-41  Score=282.72  Aligned_cols=254  Identities=21%  Similarity=0.233  Sum_probs=202.2

Q ss_pred             hhhhhhccccceEEEEEeecCCCCCcEEEEeeCCCcEEEEcCCCCc--ceeeccccccceEEEEeCC--CCCEEEEeeCC
Q 021247            6 LKSVENAHEESVWAVTWVPATETRPALLLTGSLDETVKLWRPDDMQ--LERTNTGHCLGVVSVAAHP--SGIIAASASLD   81 (315)
Q Consensus         6 ~~~~~~~h~~~v~~v~~~~~~~~~~~~l~sgs~d~~v~~w~~~~~~--~~~~~~~h~~~v~~~~~~~--~g~~l~s~~~d   81 (315)
                      +..++.+|++.|++++|+|.++    +|++|+.|++|++||..+.+  ....+.+|..+|.+++|++  ++.+|++++.|
T Consensus         5 ~~~~~~~H~~~V~~v~~s~~g~----~lasgs~D~~v~lwd~~~~~~~~~~~l~gH~~~V~~v~~~~~~~~~~l~s~s~D   80 (316)
T 3bg1_A            5 INTVDTSHEDMIHDAQMDYYGT----RLATCSSDRSVKIFDVRNGGQILIADLRGHEGPVWQVAWAHPMYGNILASCSYD   80 (316)
T ss_dssp             ---------CCEEEEEECGGGC----EEEEEETTTEEEEEEEETTEEEEEEEEECCSSCEEEEEECCGGGSSCEEEEETT
T ss_pred             eeeecccccCeEEEeeEcCCCC----EEEEEeCCCeEEEEEecCCCcEEEEEEcCCCccEEEEEeCCCCCCCEEEEEECC
Confidence            5667789999999999999875    79999999999999987653  3556789999999999986  48999999999


Q ss_pred             CeEEEEECCCCc--eeEEeeCCcccEEEEEECCCC-CeEEEEecCCCeEEEEecCCcceeeeecCCCCCCCCCCccCCCC
Q 021247           82 SFVRVFDVDTNA--SIATLEASPSEVWQMQFDPKG-TTLAVAGGGSASVKLWDTATWNLIATLSIPRPEGLKPTDKSSSK  158 (315)
Q Consensus        82 ~~i~~w~~~~~~--~~~~~~~~~~~v~~~~~~~~~-~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~  158 (315)
                      ++|++||++++.  ....+..|...|.+++|+|++ ..++++++.|++|++||++.........          ....|.
T Consensus        81 ~~v~iWd~~~~~~~~~~~~~~h~~~V~~v~~~p~~~g~~lasgs~D~~i~lwd~~~~~~~~~~~----------~~~~h~  150 (316)
T 3bg1_A           81 RKVIIWREENGTWEKSHEHAGHDSSVNSVCWAPHDYGLILACGSSDGAISLLTYTGEGQWEVKK----------INNAHT  150 (316)
T ss_dssp             SCEEEECCSSSCCCEEEEECCCSSCCCEEEECCTTTCSCEEEECSSSCEEEEEECSSSCEEECC----------BTTSSS
T ss_pred             CEEEEEECCCCcceEEEEccCCCCceEEEEECCCCCCcEEEEEcCCCCEEEEecCCCCCcceee----------eecccc
Confidence            999999998864  556677889999999999983 3356789999999999997643211110          112345


Q ss_pred             cceEEEEECCC-----------------CCEEEEecCCCcEEEEEcccc---eeeeeecCCccceEEEEEcCCC---CcE
Q 021247          159 KFVLSVAWSPD-----------------GRRIACGSMDGTISVFDVTRA---KFLHHLEGHFMPVRSLVYSPVD---PRV  215 (315)
Q Consensus       159 ~~i~~~~~~~~-----------------~~~l~~~s~dg~i~i~d~~~~---~~~~~~~~~~~~v~~~~~~~~~---~~~  215 (315)
                      ..+.+++|+|+                 +++|++|+.|+.|++||++..   +....+.+|...|++++|+|.+   ..+
T Consensus       151 ~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~l~~h~~~V~~v~~sp~~~~~~~~  230 (316)
T 3bg1_A          151 IGCNAVSWAPAVVPGSLIDHPSGQKPNYIKRFASGGCDNLIKLWKEEEDGQWKEEQKLEAHSDWVRDVAWAPSIGLPTST  230 (316)
T ss_dssp             SCBCCCEECCCCCC------CCSCCCCCCCBEECCBTTSBCCEEEECTTSCEEEEECCBCCSSCEEEEECCCCSSCSCCE
T ss_pred             CCcceEEEccccCCccccccccccCccccceEEEecCCCeEEEEEeCCCCccceeeecccCCCceEEEEecCCCCCCCce
Confidence            56888999987                 478999999999999999754   4567788999999999999964   378


Q ss_pred             EEEEeCCCeEEEEeCCCC----eeEEEeecccccEEEEEEcCCCCeEEEEeCCCcEEEEecC
Q 021247          216 LFSASDDTHVHMYDAEGK----SLVTAMSGHASWVLSVDASPDGAAITTGSSDRTVKLWDLN  273 (315)
Q Consensus       216 l~s~~~d~~i~~wd~~~~----~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~d~~i~iwd~~  273 (315)
                      |++++.|++|++||.+..    .....+..|...|.+++|+|++++|++++.|++|++|+..
T Consensus       231 las~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~g~~las~~~D~~v~lw~~~  292 (316)
T 3bg1_A          231 IASCSQDGRVFIWTCDDASSNTWSPKLLHKFNDVVWHVSWSITANILAVSGGDNKVTLWKES  292 (316)
T ss_dssp             EEEEETTCEEEEEECSSTTCCCCBCCEEEECSSCEEEEEECTTTCCEEEEESSSCEEEEEEC
T ss_pred             EEEEcCCCeEEEEEccCccccchhhhhhhcCCCcEEEEEEcCCCCEEEEEcCCCeEEEEEEC
Confidence            999999999999998752    1223456788999999999999999999999999999976

>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}

Probab=100.00  E-value=2.6e-40  Score=277.63  Aligned_cols=247  Identities=23%  Similarity=0.355  Sum_probs=202.9

Q ss_pred             CcceeeccccccceEEEEeCCCCCEEEEeeCCCeEEEEECCCC--ceeEEe-eC-CcccEEEEEECCCCCeEEEEecCCC
Q 021247           50 MQLERTNTGHCLGVVSVAAHPSGIIAASASLDSFVRVFDVDTN--ASIATL-EA-SPSEVWQMQFDPKGTTLAVAGGGSA  125 (315)
Q Consensus        50 ~~~~~~~~~h~~~v~~~~~~~~g~~l~s~~~d~~i~~w~~~~~--~~~~~~-~~-~~~~v~~~~~~~~~~~~~~~~~~d~  125 (315)
                      .++.+.+.+|..+|.+++++|+  +|++++.|++|++||+..+  .....+ .. |...|.+++|+|+++. +++++.|+
T Consensus         4 ~~~~~~~~~h~~~v~~~~~s~~--~las~~~D~~i~lw~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~-las~s~D~   80 (330)
T 2hes_X            4 INLIKSLKLYKEKIWSFDFSQG--ILATGSTDRKIKLVSVKYDDFTLIDVLDETAHKKAIRSVAWRPHTSL-LAAGSFDS   80 (330)
T ss_dssp             CEEEEEEECCSSCEEEEEEETT--EEEEEESSSCEEEEECSSSCCEEEEEECTTCCCSCEEEEEECTTSSE-EEEEETTS
T ss_pred             cccceeeccCCCceeeeccCCC--EEEEEcCCCEEEEEEecCCCeEEEEEEecCCccCCEEEEEECCCCCE-EEEEeCCC
Confidence            3456677899999999999987  9999999999999999875  344445 34 8889999999999875 56888999


Q ss_pred             eEEEEecCCcc-------eeeeecCCCCCCCCCCccCCCCcceEEEEECCCCCEEEEecCCCcEEEEEccc----ceeee
Q 021247          126 SVKLWDTATWN-------LIATLSIPRPEGLKPTDKSSSKKFVLSVAWSPDGRRIACGSMDGTISVFDVTR----AKFLH  194 (315)
Q Consensus       126 ~i~~~d~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~s~dg~i~i~d~~~----~~~~~  194 (315)
                      +|++||.....       .+..             ...|...|.+++|+|++++|++|+.|+.|++||++.    .+.+.
T Consensus        81 ~v~iw~~~~~~~~~~~~~~~~~-------------~~~h~~~V~~v~~sp~g~~las~s~D~~v~iwd~~~~~~~~~~~~  147 (330)
T 2hes_X           81 TVSIWAKEESADRTFEMDLLAI-------------IEGHENEVKGVAWSNDGYYLATCSRDKSVWIWETDESGEEYECIS  147 (330)
T ss_dssp             CEEEEEC-------CCCEEEEE-------------EC----CEEEEEECTTSCEEEEEETTSCEEEEECCTTCCCCEEEE
T ss_pred             cEEEEEcccCcCccccceeEEE-------------EcCCCCcEEEEEECCCCCEEEEEeCCCEEEEEeccCCCCCeEEEE
Confidence            99999985321       1111             134566799999999999999999999999999943    24567


Q ss_pred             eecCCccceEEEEEcCCCCcEEEEEeCCCeEEEEeCCCC--eeEEEeecccccEEEEEEcCC--CCeEEEEeCCCcEEEE
Q 021247          195 HLEGHFMPVRSLVYSPVDPRVLFSASDDTHVHMYDAEGK--SLVTAMSGHASWVLSVDASPD--GAAITTGSSDRTVKLW  270 (315)
Q Consensus       195 ~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~--~~~~~~~~~~~~i~~~~~~~~--~~~l~s~~~d~~i~iw  270 (315)
                      .+.+|...|.++.|+| ++.+|++++.|++|++||...+  +.+..+.+|...|.+++|+|+  +..|++|+.|++|++|
T Consensus       148 ~~~~h~~~v~~v~~~p-~~~~l~s~s~D~~i~iW~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~D~~v~iw  226 (330)
T 2hes_X          148 VLQEHSQDVKHVIWHP-SEALLASSSYDDTVRIWKDYDDDWECVAVLNGHEGTVWSSDFDKTEGVFRLCSGSDDSTVRVW  226 (330)
T ss_dssp             EECCCSSCEEEEEECS-SSSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCSSSSCEEEEEETTSCEEEE
T ss_pred             EeccCCCceEEEEECC-CCCEEEEEcCCCeEEEEECCCCCeeEEEEccCCCCcEEEEEecCCCCeeEEEEEeCCCeEEEE
Confidence            7889999999999999 6789999999999999998765  567788899999999999998  6789999999999999


Q ss_pred             ecCcc--------ceehcccc-cccceEEEEEeeCCCEEEEEeCCCcEEEeec
Q 021247          271 DLNMR--------AAMQSMTN-HTDQVWGVSFRPLGGRVVSVSDDKSISLYEY  314 (315)
Q Consensus       271 d~~~~--------~~~~~~~~-~~~~v~~~~~s~~~~~l~s~~~d~~i~i~~~  314 (315)
                      |++.+        .....+.. |...|++++|++++ +|++++.||+|+||+.
T Consensus       227 ~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~~-~l~s~~~dg~v~iw~~  278 (330)
T 2hes_X          227 KYMGDDEDDQQEWVCEAILPDVHKRQVYNVAWGFNG-LIASVGADGVLAVYEE  278 (330)
T ss_dssp             EEEEECTTSCEEEEEEEECCSCCSSCEEEEEECTTS-CEEEEETTSCEEEEEE
T ss_pred             EecCCCccccceeEEeeecccccccceEEEEEcCCC-EEEEEeCCCEEEEEEc
Confidence            99764        23344444 88999999999765 8999999999999985

>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}

Probab=100.00  E-value=6.3e-41  Score=292.37  Aligned_cols=286  Identities=13%  Similarity=0.237  Sum_probs=229.1

Q ss_pred             ccccceEEEEEeecCCCCCcEEEEeeCCCcEEEEcCCCCc-----------ceeeccccc------------cceEEEEe
Q 021247           12 AHEESVWAVTWVPATETRPALLLTGSLDETVKLWRPDDMQ-----------LERTNTGHC------------LGVVSVAA   68 (315)
Q Consensus        12 ~h~~~v~~v~~~~~~~~~~~~l~sgs~d~~v~~w~~~~~~-----------~~~~~~~h~------------~~v~~~~~   68 (315)
                      .|.+.|++++|+|.+.    +|++|+.||.|++|+..+.+           +...+.+|.            .+|.+++|
T Consensus        26 ~~~~~V~~v~~s~~g~----~la~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~l~~  101 (447)
T 3dw8_B           26 AEADIISTVEFNHSGE----LLATGDKGGRVVIFQQEQENKIQSHSRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRW  101 (447)
T ss_dssp             CGGGSEEEEEECSSSS----EEEEEETTSEEEEEEECC-----CCCCCCEEEEEEEECCCCEEEGGGTEEECCCCCEEEE
T ss_pred             cccCcEEEEEECCCCC----EEEEEcCCCeEEEEEecCCCCCCcccccceeEecccccccccccccccccccCceEEEEE
Confidence            5789999999999765    79999999999999987655           356677898            88999999


Q ss_pred             CCCC--CEEEEeeCCCeEEEEECCCCcee---------------------------------------EE-eeCCcccEE
Q 021247           69 HPSG--IIAASASLDSFVRVFDVDTNASI---------------------------------------AT-LEASPSEVW  106 (315)
Q Consensus        69 ~~~g--~~l~s~~~d~~i~~w~~~~~~~~---------------------------------------~~-~~~~~~~v~  106 (315)
                      +|++  .++++++.|++|++||+.++...                                       .. ...|...|.
T Consensus       102 ~~~~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~  181 (447)
T 3dw8_B          102 LPQKNAAQFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFANAHTYHIN  181 (447)
T ss_dssp             CCCCSSSEEEEEECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEECSCCSSCCC
T ss_pred             cCCCCcceEEEeCCCCeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceEEeccCCCcceE
Confidence            9998  79999999999999998764331                                       12 356888999


Q ss_pred             EEEECCCCCeEEEEecCCCeEEEEecCC-cceeeeecCCCCCCCCCCccCCCCcceEEEEECCCC-CEEEEecCCCcEEE
Q 021247          107 QMQFDPKGTTLAVAGGGSASVKLWDTAT-WNLIATLSIPRPEGLKPTDKSSSKKFVLSVAWSPDG-RRIACGSMDGTISV  184 (315)
Q Consensus       107 ~~~~~~~~~~~~~~~~~d~~i~~~d~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~l~~~s~dg~i~i  184 (315)
                      +++|+|+++.+ ++| .|+.|++||+++ .+.+..+...      +.....|...|.+++|+|++ ++|++|+.||.|++
T Consensus       182 ~~~~~~~~~~l-~s~-~d~~i~iwd~~~~~~~~~~~~~~------~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~i  253 (447)
T 3dw8_B          182 SISINSDYETY-LSA-DDLRINLWHLEITDRSFNIVDIK------PANMEELTEVITAAEFHPNSCNTFVYSSSKGTIRL  253 (447)
T ss_dssp             EEEECTTSSEE-EEE-CSSEEEEEETTEEEEEEEEEECC------CSSGGGCCCCEEEEEECSSCTTEEEEEETTSCEEE
T ss_pred             EEEEcCCCCEE-EEe-CCCeEEEEECCCCCceeeeeecc------cccccccCcceEEEEECCCCCcEEEEEeCCCeEEE
Confidence            99999998865 456 799999999984 3344333221      11233466779999999998 89999999999999


Q ss_pred             EEccccee----eeeecCCcc------------ceEEEEEcCCCCcEEEEEeCCCeEEEEeCCC-CeeEEEeeccccc--
Q 021247          185 FDVTRAKF----LHHLEGHFM------------PVRSLVYSPVDPRVLFSASDDTHVHMYDAEG-KSLVTAMSGHASW--  245 (315)
Q Consensus       185 ~d~~~~~~----~~~~~~~~~------------~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~-~~~~~~~~~~~~~--  245 (315)
                      ||+++++.    ...+..|..            .|.+++|+| ++++|++++. +.|++||++. ++.+..+.+|...  
T Consensus       254 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~-~g~~l~~~~~-~~v~iwd~~~~~~~~~~~~~~~~~~~  331 (447)
T 3dw8_B          254 CDMRASALCDRHSKLFEEPEDPSNRSFFSEIISSISDVKFSH-SGRYMMTRDY-LSVKVWDLNMENRPVETYQVHEYLRS  331 (447)
T ss_dssp             EETTTCSSSCTTCEEECCC-----CCHHHHHTTCEEEEEECT-TSSEEEEEES-SEEEEEETTCCSSCSCCEESCGGGTT
T ss_pred             EECcCCccccceeeEeccCCCccccccccccCceEEEEEECC-CCCEEEEeeC-CeEEEEeCCCCccccceeeccccccc
Confidence            99998876    677777775            899999999 6788999998 9999999986 7777777777532  


Q ss_pred             -------------EEEEEEcCCCCeEEEEeCCCcEEEEecCccceehccc------------------------------
Q 021247          246 -------------VLSVDASPDGAAITTGSSDRTVKLWDLNMRAAMQSMT------------------------------  282 (315)
Q Consensus       246 -------------i~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~------------------------------  282 (315)
                                   +..++|+|++++|++|+.||.|++||+.+++.+. +.                              
T Consensus       332 ~l~~~~~~~~i~~~~~~~~s~~~~~l~s~s~dg~v~iwd~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  410 (447)
T 3dw8_B          332 KLCSLYENDCIFDKFECCWNGSDSVVMTGSYNNFFRMFDRNTKRDIT-LEASRENNKPRTVLKPRKVCASGKRKKDEISV  410 (447)
T ss_dssp             THHHHHHTSGGGCCCCEEECTTSSEEEEECSTTEEEEEETTTCCEEE-EECCSTTCCTTCBCCCCCEECSSCCCTTCEEG
T ss_pred             cccccccccccccceEEEECCCCCEEEEeccCCEEEEEEcCCCccee-eeecccccccccccCCccccccCCcccccccc
Confidence                         3348999999999999999999999998776532 11                              


Q ss_pred             ---ccccceEEEEEeeCCCEEEEEeCCCcEEEee
Q 021247          283 ---NHTDQVWGVSFRPLGGRVVSVSDDKSISLYE  313 (315)
Q Consensus       283 ---~~~~~v~~~~~s~~~~~l~s~~~d~~i~i~~  313 (315)
                         .+...|..++|+|++++||+++.++ +.+|.
T Consensus       411 ~~~~~~~~i~~~~~~p~~~~la~~~~~~-~~~~~  443 (447)
T 3dw8_B          411 DSLDFNKKILHTAWHPKENIIAVATTNN-LYIFQ  443 (447)
T ss_dssp             GGCCTTSCCCEEEECSSSSEEEEECSSC-EEEEE
T ss_pred             cccccCCceeEEEECCCCCEEEEEecce-eeeec
Confidence               2345788999999999999888876 77775

>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...

Probab=100.00  E-value=1.6e-39  Score=270.65  Aligned_cols=251  Identities=24%  Similarity=0.404  Sum_probs=220.3

Q ss_pred             CcceeeccccccceEEEEeCCCCCEEEEeeCCCeEEEEECCCCceeEEeeCCcccEEEEEECCCCCeEEEEecCCCeEEE
Q 021247           50 MQLERTNTGHCLGVVSVAAHPSGIIAASASLDSFVRVFDVDTNASIATLEASPSEVWQMQFDPKGTTLAVAGGGSASVKL  129 (315)
Q Consensus        50 ~~~~~~~~~h~~~v~~~~~~~~g~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~  129 (315)
                      ..+...+.+|..+|.+++|+|+|.++++++.|+.|++|++.+++....+..|...|.+++|+|+++.+ ++++.|+.|++
T Consensus        13 ~~~~~~~~gh~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l-~s~~~d~~i~v   91 (312)
T 4ery_A           13 YALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLL-VSASDDKTLKI   91 (312)
T ss_dssp             CEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEE-EEEETTSEEEE
T ss_pred             ceeEEEEcccCCcEEEEEECCCCCEEEEeeCCCeEEEEeCCCcccchhhccCCCceEEEEEcCCCCEE-EEECCCCEEEE
Confidence            34455678999999999999999999999999999999999999988999999999999999998854 67889999999


Q ss_pred             EecCCcceeeeecCCCCCCCCCCccCCCCcceEEEEECCCCCEEEEecCCCcEEEEEcccceeeeeecCCccceEEEEEc
Q 021247          130 WDTATWNLIATLSIPRPEGLKPTDKSSSKKFVLSVAWSPDGRRIACGSMDGTISVFDVTRAKFLHHLEGHFMPVRSLVYS  209 (315)
Q Consensus       130 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~s~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~  209 (315)
                      ||+++++.+..+..             |...|.+++|+|++++|++|+.|+.|++||+++++.+..+..|..+|.++.|+
T Consensus        92 wd~~~~~~~~~~~~-------------~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~  158 (312)
T 4ery_A           92 WDVSSGKCLKTLKG-------------HSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFN  158 (312)
T ss_dssp             EETTTCCEEEEEEC-------------CSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEEC
T ss_pred             EECCCCcEEEEEcC-------------CCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCEEEEEecCCCCcEEEEEEc
Confidence            99998877766532             34569999999999999999999999999999999999999999999999999


Q ss_pred             CCCCcEEEEEeCCCeEEEEeCCCCeeEEEe-ecccccEEEEEEcCCCCeEEEEeCCCcEEEEecCccceehcccccccce
Q 021247          210 PVDPRVLFSASDDTHVHMYDAEGKSLVTAM-SGHASWVLSVDASPDGAAITTGSSDRTVKLWDLNMRAAMQSMTNHTDQV  288 (315)
Q Consensus       210 ~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~-~~~~~~i~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v  288 (315)
                      | ++.++++++.|+.|++||++.++.+..+ ..+...+..++|+|++++|++++.|+.|++||++.++.+..+.+|....
T Consensus       159 ~-~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~  237 (312)
T 4ery_A          159 R-DGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEK  237 (312)
T ss_dssp             T-TSSEEEEEETTSCEEEEETTTCCEEEEECCSSCCCEEEEEECTTSSEEEEEETTTEEEEEETTTTEEEEEECSSCCSS
T ss_pred             C-CCCEEEEEeCCCcEEEEECCCCceeeEEeccCCCceEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEEecCCce
Confidence            8 6779999999999999999988776665 4566789999999999999999999999999999998888887776543


Q ss_pred             E--EEEE-eeCCCEEEEEeCCCcEEEeecC
Q 021247          289 W--GVSF-RPLGGRVVSVSDDKSISLYEYS  315 (315)
Q Consensus       289 ~--~~~~-s~~~~~l~s~~~d~~i~i~~~~  315 (315)
                      .  ...+ .+++.+|++++.||.|++||+.
T Consensus       238 ~~~~~~~~~~~~~~l~sg~~dg~i~vwd~~  267 (312)
T 4ery_A          238 YCIFANFSVTGGKWIVSGSEDNLVYIWNLQ  267 (312)
T ss_dssp             SCCCEEEECSSSCEEEECCTTSCEEEEETT
T ss_pred             EEEEEEEEeCCCcEEEEECCCCEEEEEECC
Confidence            2  2234 4678899999999999999963

>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*

Probab=100.00  E-value=1.9e-39  Score=283.20  Aligned_cols=276  Identities=26%  Similarity=0.411  Sum_probs=244.0

Q ss_pred             hhhccccceEEEEEeecCCCCCcEEEEeeCCCcEEEEcCCCCcceeeccccccceEEEEeCCCCCEEEEeeCCCeEEEEE
Q 021247            9 VENAHEESVWAVTWVPATETRPALLLTGSLDETVKLWRPDDMQLERTNTGHCLGVVSVAAHPSGIIAASASLDSFVRVFD   88 (315)
Q Consensus         9 ~~~~h~~~v~~v~~~~~~~~~~~~l~sgs~d~~v~~w~~~~~~~~~~~~~h~~~v~~~~~~~~g~~l~s~~~d~~i~~w~   88 (315)
                      ...+|...|++++|.+      .++++|+.||+|++|+..+.+....+.+|...|.++.++  +..+++++.|++|++||
T Consensus       154 ~~~~h~~~v~~~~~~~------~~l~s~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~--~~~l~s~s~dg~i~~wd  225 (445)
T 2ovr_B          154 TLVGHTGGVWSSQMRD------NIIISGSTDRTLKVWNAETGECIHTLYGHTSTVRCMHLH--EKRVVSGSRDATLRVWD  225 (445)
T ss_dssp             ECCCCSSCEEEEEEET------TEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEE--TTEEEEEETTSEEEEEE
T ss_pred             EEcCCCCCEEEEEecC------CEEEEEeCCCeEEEEECCcCcEEEEECCCCCcEEEEEec--CCEEEEEeCCCEEEEEE
Confidence            4568999999999973      379999999999999999988888889999999999995  56899999999999999


Q ss_pred             CCCCceeEEeeCCcccEEEEEECCCCCeEEEEecCCCeEEEEecCCcceeeeecCCCCCCCCCCccCCCCcceEEEEECC
Q 021247           89 VDTNASIATLEASPSEVWQMQFDPKGTTLAVAGGGSASVKLWDTATWNLIATLSIPRPEGLKPTDKSSSKKFVLSVAWSP  168 (315)
Q Consensus        89 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~  168 (315)
                      +.+++.+..+..|...+.++++  +++ .+++++.|+.|++||+++++.+..+..             +...|.+++|  
T Consensus       226 ~~~~~~~~~~~~~~~~v~~~~~--~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~-------------~~~~v~~~~~--  287 (445)
T 2ovr_B          226 IETGQCLHVLMGHVAAVRCVQY--DGR-RVVSGAYDFMVKVWDPETETCLHTLQG-------------HTNRVYSLQF--  287 (445)
T ss_dssp             SSSCCEEEEEECCSSCEEEEEE--CSS-CEEEEETTSCEEEEEGGGTEEEEEECC-------------CSSCEEEEEE--
T ss_pred             CCCCcEEEEEcCCcccEEEEEE--CCC-EEEEEcCCCEEEEEECCCCcEeEEecC-------------CCCceEEEEE--
Confidence            9999999999999999999999  344 456788999999999998877766632             3345889998  


Q ss_pred             CCCEEEEecCCCcEEEEEcccceeeeeecCCccceEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCeeEEEeec---cccc
Q 021247          169 DGRRIACGSMDGTISVFDVTRAKFLHHLEGHFMPVRSLVYSPVDPRVLFSASDDTHVHMYDAEGKSLVTAMSG---HASW  245 (315)
Q Consensus       169 ~~~~l~~~s~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~---~~~~  245 (315)
                      +++++++++.|+.|++||+++++.+..+.+|...+.++.+.   +.++++++.|+.|++||+++++.+..+..   |...
T Consensus       288 ~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~---~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~  364 (445)
T 2ovr_B          288 DGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGMELK---DNILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSA  364 (445)
T ss_dssp             CSSEEEEEETTSCEEEEETTTCCEEEEECCCCSCEEEEEEE---TTEEEEEETTSCEEEEETTTCCEEEEECSTTSCSSC
T ss_pred             CCCEEEEEeCCCeEEEEECCCCCEEEEEcCCcccEEEEEEe---CCEEEEEeCCCeEEEEECCCCcEEEEEccCCCCCCC
Confidence            78899999999999999999999999999999999998875   45899999999999999999888888876   8889


Q ss_pred             EEEEEEcCCCCeEEEEeCCCcEEEEecCccceehcc-----cccccceEEEEEeeCCCEEEEEeCCCc----EEEeecC
Q 021247          246 VLSVDASPDGAAITTGSSDRTVKLWDLNMRAAMQSM-----TNHTDQVWGVSFRPLGGRVVSVSDDKS----ISLYEYS  315 (315)
Q Consensus       246 i~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~-----~~~~~~v~~~~~s~~~~~l~s~~~d~~----i~i~~~~  315 (315)
                      |.+++++  +++|++|+.||.|++||+.+++.+..+     ..|.+.|++++|+|++..+++++.||+    |.|||++
T Consensus       365 v~~~~~~--~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~la~~~~dg~~~~~l~v~df~  441 (445)
T 2ovr_B          365 VTCLQFN--KNFVITSSDDGTVKLWDLKTGEFIRNLVTLESGGSGGVVWRIRASNTKLVCAVGSRNGTEETKLLVLDFD  441 (445)
T ss_dssp             EEEEEEC--SSEEEEEETTSEEEEEETTTCCEEEEEEECTTGGGTCEEEEEEECSSEEEEEEECSSSSSCCEEEEEECC
T ss_pred             EEEEEEC--CCEEEEEeCCCeEEEEECCCCceeeeeeccccCCCCceEEEEEecCCEEEEEEcccCCCCccEEEEEECC
Confidence            9999996  579999999999999999998887766     467889999999999999999999998    9999985

>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*

Probab=100.00  E-value=3.6e-39  Score=281.46  Aligned_cols=276  Identities=29%  Similarity=0.453  Sum_probs=242.5

Q ss_pred             hhhhhccccce-EEEEEeecCCCCCcEEEEeeCCCcEEEEcCCCCcceeeccccccceEEEEeCCCCCEEEEeeCCCeEE
Q 021247            7 KSVENAHEESV-WAVTWVPATETRPALLLTGSLDETVKLWRPDDMQLERTNTGHCLGVVSVAAHPSGIIAASASLDSFVR   85 (315)
Q Consensus         7 ~~~~~~h~~~v-~~v~~~~~~~~~~~~l~sgs~d~~v~~w~~~~~~~~~~~~~h~~~v~~~~~~~~g~~l~s~~~d~~i~   85 (315)
                      ..++.+|.+.| .++.+  .++    +|++|+.||+|++|+..+.+....+.+|..+|.++.++  +.++++++.|++|+
T Consensus       111 ~~~l~~h~~~v~~~~~~--~g~----~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~--~~~l~s~~~dg~i~  182 (445)
T 2ovr_B          111 PKVLKGHDDHVITCLQF--CGN----RIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQMR--DNIIISGSTDRTLK  182 (445)
T ss_dssp             CEEEECSTTSCEEEEEE--ETT----EEEEEETTSCEEEEETTTCCEEEECCCCSSCEEEEEEE--TTEEEEEETTSCEE
T ss_pred             eEEecccCCCcEEEEEE--cCC----EEEEEECCCcEEEEECCCCcEEEEEcCCCCCEEEEEec--CCEEEEEeCCCeEE
Confidence            34567899875 55554  333    79999999999999999999989999999999999997  66999999999999


Q ss_pred             EEECCCCceeEEeeCCcccEEEEEECCCCCeEEEEecCCCeEEEEecCCcceeeeecCCCCCCCCCCccCCCCcceEEEE
Q 021247           86 VFDVDTNASIATLEASPSEVWQMQFDPKGTTLAVAGGGSASVKLWDTATWNLIATLSIPRPEGLKPTDKSSSKKFVLSVA  165 (315)
Q Consensus        86 ~w~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~  165 (315)
                      +||+.+++.+..+..|...|.++.+++  + .+++++.|++|++||+++++.+..+..             +...+.+++
T Consensus       183 vwd~~~~~~~~~~~~h~~~v~~~~~~~--~-~l~s~s~dg~i~~wd~~~~~~~~~~~~-------------~~~~v~~~~  246 (445)
T 2ovr_B          183 VWNAETGECIHTLYGHTSTVRCMHLHE--K-RVVSGSRDATLRVWDIETGQCLHVLMG-------------HVAAVRCVQ  246 (445)
T ss_dssp             EEETTTTEEEEEECCCSSCEEEEEEET--T-EEEEEETTSEEEEEESSSCCEEEEEEC-------------CSSCEEEEE
T ss_pred             EEECCcCcEEEEECCCCCcEEEEEecC--C-EEEEEeCCCEEEEEECCCCcEEEEEcC-------------CcccEEEEE
Confidence            999999999999999999999999964  3 467889999999999998887766542             344588898


Q ss_pred             ECCCCCEEEEecCCCcEEEEEcccceeeeeecCCccceEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCeeEEEeeccccc
Q 021247          166 WSPDGRRIACGSMDGTISVFDVTRAKFLHHLEGHFMPVRSLVYSPVDPRVLFSASDDTHVHMYDAEGKSLVTAMSGHASW  245 (315)
Q Consensus       166 ~~~~~~~l~~~s~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~  245 (315)
                      +  +++++++|+.||.|++||+++++.+..+.+|...|.++.|   ++.++++++.|+.|++||+++++.+..+.+|...
T Consensus       247 ~--~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~---~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~  321 (445)
T 2ovr_B          247 Y--DGRRVVSGAYDFMVKVWDPETETCLHTLQGHTNRVYSLQF---DGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSL  321 (445)
T ss_dssp             E--CSSCEEEEETTSCEEEEEGGGTEEEEEECCCSSCEEEEEE---CSSEEEEEETTSCEEEEETTTCCEEEEECCCCSC
T ss_pred             E--CCCEEEEEcCCCEEEEEECCCCcEeEEecCCCCceEEEEE---CCCEEEEEeCCCeEEEEECCCCCEEEEEcCCccc
Confidence            8  6889999999999999999999999999999999999998   4678999999999999999999999999999999


Q ss_pred             EEEEEEcCCCCeEEEEeCCCcEEEEecCccceehcccc---cccceEEEEEeeCCCEEEEEeCCCcEEEeecC
Q 021247          246 VLSVDASPDGAAITTGSSDRTVKLWDLNMRAAMQSMTN---HTDQVWGVSFRPLGGRVVSVSDDKSISLYEYS  315 (315)
Q Consensus       246 i~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~---~~~~v~~~~~s~~~~~l~s~~~d~~i~i~~~~  315 (315)
                      +.++.++  +.++++|+.||.|++||+++++.+..+..   |...|++++|+  +++|++++.||+|+|||+.
T Consensus       322 v~~~~~~--~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~v~iwd~~  390 (445)
T 2ovr_B          322 TSGMELK--DNILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFN--KNFVITSSDDGTVKLWDLK  390 (445)
T ss_dssp             EEEEEEE--TTEEEEEETTSCEEEEETTTCCEEEEECSTTSCSSCEEEEEEC--SSEEEEEETTSEEEEEETT
T ss_pred             EEEEEEe--CCEEEEEeCCCeEEEEECCCCcEEEEEccCCCCCCCEEEEEEC--CCEEEEEeCCCeEEEEECC
Confidence            9888775  56999999999999999999888877765   78899999996  5799999999999999963

>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1

Probab=100.00  E-value=1.1e-39  Score=280.26  Aligned_cols=251  Identities=24%  Similarity=0.381  Sum_probs=213.8

Q ss_pred             cccceEEEEEeecCCCCCcEEEEeeCCCcEEEEcCCCCcceeeccccccceEEEEeCCCCCEEEEeeCCCeEEEEECCCC
Q 021247           13 HEESVWAVTWVPATETRPALLLTGSLDETVKLWRPDDMQLERTNTGHCLGVVSVAAHPSGIIAASASLDSFVRVFDVDTN   92 (315)
Q Consensus        13 h~~~v~~v~~~~~~~~~~~~l~sgs~d~~v~~w~~~~~~~~~~~~~h~~~v~~~~~~~~g~~l~s~~~d~~i~~w~~~~~   92 (315)
                      +...|.+++|+|+++    +|++|+.|+.|++||..+.+....+.+|...|.+++|+|++.+|++++.|++|++||+.++
T Consensus       122 ~~~~v~~v~~s~dg~----~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~v~iwd~~~~  197 (393)
T 1erj_A          122 SDLYIRSVCFSPDGK----FLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTG  197 (393)
T ss_dssp             CCCBEEEEEECTTSS----EEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTT
T ss_pred             CceeEEEEEECCCCC----EEEEEcCCCeEEEEECCCCcEEEEEccCCCCEEEEEEcCCCCEEEEecCCCcEEEEECCCC
Confidence            344699999999775    7999999999999999998888889999999999999999999999999999999999999


Q ss_pred             ceeEEeeCCcccEEEEEECCCCCeEEEEecCCCeEEEEecCCcceeeeecCCCCCCCCCCccCCCCcceEEEEECCCCCE
Q 021247           93 ASIATLEASPSEVWQMQFDPKGTTLAVAGGGSASVKLWDTATWNLIATLSIPRPEGLKPTDKSSSKKFVLSVAWSPDGRR  172 (315)
Q Consensus        93 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~  172 (315)
                      ++...+. +...+..++++|....++++++.|++|++||+++++.+..+.....      ....|...|.+++|+|++++
T Consensus       198 ~~~~~~~-~~~~v~~~~~~~~~~~~l~~~s~d~~v~iwd~~~~~~~~~~~~~~~------~~~~h~~~v~~v~~~~~g~~  270 (393)
T 1erj_A          198 QCSLTLS-IEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENE------SGTGHKDSVYSVVFTRDGQS  270 (393)
T ss_dssp             EEEEEEE-CSSCEEEEEECSTTCCEEEEEETTSCEEEEETTTCCEEEEEC------------CCCSSCEEEEEECTTSSE
T ss_pred             eeEEEEE-cCCCcEEEEEECCCCCEEEEEcCCCcEEEEECCCCcEEEeeccccc------CCCCCCCCEEEEEECCCCCE
Confidence            8877766 4567899999994444567889999999999998877766532211      11346677999999999999


Q ss_pred             EEEecCCCcEEEEEcccc------------eeeeeecCCccceEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCeeEEEee
Q 021247          173 IACGSMDGTISVFDVTRA------------KFLHHLEGHFMPVRSLVYSPVDPRVLFSASDDTHVHMYDAEGKSLVTAMS  240 (315)
Q Consensus       173 l~~~s~dg~i~i~d~~~~------------~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~  240 (315)
                      |++|+.|+.|++||+++.            .....+.+|...|.+++|+| ++.+|++++.|+.|++||.++++.+..+.
T Consensus       271 l~s~s~d~~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~-~~~~l~sgs~D~~v~iwd~~~~~~~~~l~  349 (393)
T 1erj_A          271 VVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQ-NDEYILSGSKDRGVLFWDKKSGNPLLMLQ  349 (393)
T ss_dssp             EEEEETTSEEEEEEC---------------CEEEEEECCSSCEEEEEECG-GGCEEEEEETTSEEEEEETTTCCEEEEEE
T ss_pred             EEEEeCCCEEEEEECCCCCCcccccCCCCCcceEEEecccCcEEEEEECC-CCCEEEEEeCCCeEEEEECCCCeEEEEEC
Confidence            999999999999999753            23456678999999999998 66799999999999999999999999999


Q ss_pred             cccccEEEEEEcC------CCCeEEEEeCCCcEEEEecCcc
Q 021247          241 GHASWVLSVDASP------DGAAITTGSSDRTVKLWDLNMR  275 (315)
Q Consensus       241 ~~~~~i~~~~~~~------~~~~l~s~~~d~~i~iwd~~~~  275 (315)
                      +|...|.++++++      ++.+|++|+.|++|++|++...
T Consensus       350 ~h~~~v~~v~~~~~~~~~p~~~~l~sgs~Dg~i~iW~~~~~  390 (393)
T 1erj_A          350 GHRNSVISVAVANGSSLGPEYNVFATGSGDCKARIWKYKKI  390 (393)
T ss_dssp             CCSSCEEEEEECSSCTTCTTCEEEEEEETTSEEEEEEEEEC
T ss_pred             CCCCCEEEEEecCCcCcCCCCCEEEEECCCCcEEECccccc
Confidence            9999999999886      6789999999999999998643

>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}

Probab=100.00  E-value=9.9e-40  Score=277.16  Aligned_cols=287  Identities=17%  Similarity=0.215  Sum_probs=231.3

Q ss_pred             hhhhccccceEEEEEeecCCCCCcEEEEeeCCCcEEEEcCCC-Ccce-eeccccccceEEEEeCCCCCEEEEeeCCCeEE
Q 021247            8 SVENAHEESVWAVTWVPATETRPALLLTGSLDETVKLWRPDD-MQLE-RTNTGHCLGVVSVAAHPSGIIAASASLDSFVR   85 (315)
Q Consensus         8 ~~~~~h~~~v~~v~~~~~~~~~~~~l~sgs~d~~v~~w~~~~-~~~~-~~~~~h~~~v~~~~~~~~g~~l~s~~~d~~i~   85 (315)
                      .+..+|.+.|++++|+|... ...+|++|+.||.|++|+..+ .... ..+.+|..+|.+++|+|++.+|++++.|+.|+
T Consensus        33 ~~~~~h~~~v~~~~~~~~~~-~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~v~  111 (368)
T 3mmy_A           33 EVTSSPDDSIGCLSFSPPTL-PGNFLIAGSWANDVRCWEVQDSGQTIPKAQQMHTGPVLDVCWSDDGSKVFTASCDKTAK  111 (368)
T ss_dssp             ECSSCCSSCEEEEEECCTTS-SSEEEEEEETTSEEEEEEECTTSCEEEEEEEECSSCEEEEEECTTSSEEEEEETTSEEE
T ss_pred             EeccCCCCceEEEEEcCCCC-CceEEEEECCCCcEEEEEcCCCCceeEEEeccccCCEEEEEECcCCCEEEEEcCCCcEE
Confidence            34679999999999999741 013799999999999999886 4333 66788999999999999999999999999999


Q ss_pred             EEECCCCceeEEeeCCcccEEEEEE--CCCCCeEEEEecCCCeEEEEecCCcceeeeecCCCCCCCCCCccCCCCcceEE
Q 021247           86 VFDVDTNASIATLEASPSEVWQMQF--DPKGTTLAVAGGGSASVKLWDTATWNLIATLSIPRPEGLKPTDKSSSKKFVLS  163 (315)
Q Consensus        86 ~w~~~~~~~~~~~~~~~~~v~~~~~--~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~  163 (315)
                      +||+.+++.+. ...|...|.+++|  +|++.. +++++.|+.|++||+++++.+..+..+.              .+.+
T Consensus       112 iwd~~~~~~~~-~~~~~~~v~~~~~~~~~~~~~-l~~~~~dg~i~vwd~~~~~~~~~~~~~~--------------~~~~  175 (368)
T 3mmy_A          112 MWDLSSNQAIQ-IAQHDAPVKTIHWIKAPNYSC-VMTGSWDKTLKFWDTRSSNPMMVLQLPE--------------RCYC  175 (368)
T ss_dssp             EEETTTTEEEE-EEECSSCEEEEEEEECSSCEE-EEEEETTSEEEEECSSCSSCSEEEECSS--------------CEEE
T ss_pred             EEEcCCCCcee-eccccCceEEEEEEeCCCCCE-EEEccCCCcEEEEECCCCcEEEEEecCC--------------CceE
Confidence            99999988766 4558889999999  787764 5678899999999999887776664322              2555


Q ss_pred             EEECCCCCEEEEecCCCcEEEEEcccceeeeee--cCCccceEEEEEcCC---CCcEEEEEeCCCeEEEEeCCCC---ee
Q 021247          164 VAWSPDGRRIACGSMDGTISVFDVTRAKFLHHL--EGHFMPVRSLVYSPV---DPRVLFSASDDTHVHMYDAEGK---SL  235 (315)
Q Consensus       164 ~~~~~~~~~l~~~s~dg~i~i~d~~~~~~~~~~--~~~~~~v~~~~~~~~---~~~~l~s~~~d~~i~~wd~~~~---~~  235 (315)
                      +.+.  ...+++++.++.+++||++........  ..+...+..+.+.+.   .+..+++++.|+.|++||.+..   ..
T Consensus       176 ~~~~--~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~~~~~~  253 (368)
T 3mmy_A          176 ADVI--YPMAVVATAERGLIVYQLENQPSEFRRIESPLKHQHRCVAIFKDKQNKPTGFALGSIEGRVAIHYINPPNPAKD  253 (368)
T ss_dssp             EEEE--TTEEEEEEGGGCEEEEECSSSCEEEEECCCSCSSCEEEEEEEECTTSCEEEEEEEETTSEEEEEESSCSCHHHH
T ss_pred             EEec--CCeeEEEeCCCcEEEEEeccccchhhhccccccCCCceEEEcccCCCCCCeEEEecCCCcEEEEecCCCCcccc
Confidence            5555  457888889999999999765433222  123334455555432   2234999999999999999876   45


Q ss_pred             EEEeecccc------------cEEEEEEcCCCCeEEEEeCCCcEEEEecCccceehcccccccceEEEEEeeCCCEEEEE
Q 021247          236 VTAMSGHAS------------WVLSVDASPDGAAITTGSSDRTVKLWDLNMRAAMQSMTNHTDQVWGVSFRPLGGRVVSV  303 (315)
Q Consensus       236 ~~~~~~~~~------------~i~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~  303 (315)
                      +..+.+|..            .|.+++|+|++++|++++.||.|++||+++++.+..+..|...|++++|+|+|.+|+++
T Consensus       254 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~  333 (368)
T 3mmy_A          254 NFTFKCHRSNGTNTSAPQDIYAVNGIAFHPVHGTLATVGSDGRFSFWDKDARTKLKTSEQLDQPISACCFNHNGNIFAYA  333 (368)
T ss_dssp             SEEEECSEEC----CCCEEECCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEECCCCSSCEEEEEECTTSSCEEEE
T ss_pred             ceeeeeeecccccccccccccceEEEEEecCCCEEEEEccCCeEEEEECCCCcEEEEecCCCCCceEEEECCCCCeEEEE
Confidence            566677765            79999999999999999999999999999999999999999999999999999999999


Q ss_pred             eCCCcEEEee
Q 021247          304 SDDKSISLYE  313 (315)
Q Consensus       304 ~~d~~i~i~~  313 (315)
                      +.|+..+.|+
T Consensus       334 s~d~~~~~~~  343 (368)
T 3mmy_A          334 SSYDWSKGHE  343 (368)
T ss_dssp             ECCCSTTCGG
T ss_pred             eccccccccc
Confidence            9998655554

>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}

Probab=100.00  E-value=4.4e-40  Score=308.78  Aligned_cols=296  Identities=13%  Similarity=0.125  Sum_probs=221.4

Q ss_pred             ccccceEEEEEeecCCCCCcEEEEeeCCCcEEEEcCCCCcceeeccccccceEEEEeCCCCCEEEEeeCCCeEEEEECCC
Q 021247           12 AHEESVWAVTWVPATETRPALLLTGSLDETVKLWRPDDMQLERTNTGHCLGVVSVAAHPSGIIAASASLDSFVRVFDVDT   91 (315)
Q Consensus        12 ~h~~~v~~v~~~~~~~~~~~~l~sgs~d~~v~~w~~~~~~~~~~~~~h~~~v~~~~~~~~g~~l~s~~~d~~i~~w~~~~   91 (315)
                      .|...|++++|+| +.    +|++++.|++|++||..+.+....+. |...|.+++|+|++.++++|+.||+|++||+.+
T Consensus        56 ~~~~~V~~l~fsp-g~----~L~S~s~D~~v~lWd~~~~~~~~~~~-~~~~V~~v~~sp~g~~l~sgs~dg~V~lwd~~~  129 (902)
T 2oaj_A           56 EDRSAIKEMRFVK-GI----YLVVINAKDTVYVLSLYSQKVLTTVF-VPGKITSIDTDASLDWMLIGLQNGSMIVYDIDR  129 (902)
T ss_dssp             SSCCCEEEEEEET-TT----EEEEEETTCEEEEEETTTCSEEEEEE-CSSCEEEEECCTTCSEEEEEETTSCEEEEETTT
T ss_pred             CCCCCEEEEEEcC-CC----EEEEEECcCeEEEEECCCCcEEEEEc-CCCCEEEEEECCCCCEEEEEcCCCcEEEEECCC
Confidence            5788999999999 43    79999999999999998887776664 667899999999999999999999999999998


Q ss_pred             Ccee-----------EEeeCCcccEEEEEECCCCCeEEEEecCCCeEEEEecCCcceeeeecCCCCCCCCC-----CccC
Q 021247           92 NASI-----------ATLEASPSEVWQMQFDPKGTTLAVAGGGSASVKLWDTATWNLIATLSIPRPEGLKP-----TDKS  155 (315)
Q Consensus        92 ~~~~-----------~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~-----~~~~  155 (315)
                      +...           .....|..+|.+++|+|++...+++|+.|++| +||+++.+.+..+..+.+.+...     ....
T Consensus       130 ~~~~~~~i~~~~~~~~~~~~h~~~V~sl~~sp~~~~~l~~g~~dg~v-lWd~~~~~~~~~~~~~~~~g~~~~~~~~~~~~  208 (902)
T 2oaj_A          130 DQLSSFKLDNLQKSSFFPAARLSPIVSIQWNPRDIGTVLISYEYVTL-TYSLVENEIKQSFIYELPPFAPGGDFSEKTNE  208 (902)
T ss_dssp             TEEEEEEECCHHHHHTCSSSCCCCCCEEEEETTEEEEEEEECSSCEE-EEETTTTEEEEEECCCBCTTCCCSTTCCCTTS
T ss_pred             CccccceeccccccccccccCCCCeEEEEEccCCCCEEEEEeCCCcE-EEECCCCceEEEEecccCCcCCCccccccccc
Confidence            7653           12245778999999999866667789999999 99999988877765431111000     0112


Q ss_pred             CCCcceEEEEECCCCCEEEEecCCCcEEEEEcccceeeee--e---cC-------------CccceEEEEEcC----CCC
Q 021247          156 SSKKFVLSVAWSPDGRRIACGSMDGTISVFDVTRAKFLHH--L---EG-------------HFMPVRSLVYSP----VDP  213 (315)
Q Consensus       156 ~~~~~i~~~~~~~~~~~l~~~s~dg~i~i~d~~~~~~~~~--~---~~-------------~~~~v~~~~~~~----~~~  213 (315)
                      .|...|.+++|+|+|++|++++.|+.|++||+++++.+..  +   ..             |..+|.+++|++    +++
T Consensus       209 ~h~~~V~~v~fspdg~~lasgs~Dg~i~lWd~~~g~~~~~r~l~~~~~~~~~~~~~~~~~~~~~~V~~v~w~~~~~pd~~  288 (902)
T 2oaj_A          209 KRTPKVIQSLYHPNSLHIITIHEDNSLVFWDANSGHMIMARTVFETEINVPQPDYIRDSSTNAAKISKVYWMCENNPEYT  288 (902)
T ss_dssp             CBCCCEEEEEECTTSSEEEEEETTCCEEEEETTTCCEEEEECSSCSCTTSCCTTCCCCCSSCCCEEEEEEEEECSSTTEE
T ss_pred             ccCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCcEEEEEeecccccCCCCCcCCCCCccccCCeeEEEEEecCCCCCC
Confidence            3456799999999999999999999999999988876543  2   11             344788999954    223


Q ss_pred             cEEEEEeCC-----CeEEEEe-----------------------------------------------------------
Q 021247          214 RVLFSASDD-----THVHMYD-----------------------------------------------------------  229 (315)
Q Consensus       214 ~~l~s~~~d-----~~i~~wd-----------------------------------------------------------  229 (315)
                      .++++|+.|     ..+.+|+                                                           
T Consensus       289 ~ll~sg~~~~~~~~~~v~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~sp~~~g~~d~~~l~  368 (902)
T 2oaj_A          289 SLLISHKSISRGDNQSLTMIDLGYTPRYSITSYEGMKNYYANPKQMKIFPLPTNVPIVNILPIPRQSPYFAGCHNPGLIL  368 (902)
T ss_dssp             EEEEEEECSTTSSCCCEEEEEEEECCCGGGCCHHHHHHHHHSCSEEEEECCSSSSCEEEEEECCSSCSHHHHTBSCSEEE
T ss_pred             EEEEeCCCCCCCCCceEEEEecCCCCCccccchhhhhhhhcCccceEEEecCCCCceEEEEECCCCCCCcCCCCCceeEE
Confidence            556666443     1444444                                                           


Q ss_pred             ------------CCCCeeEEE-----------------------------------------eecccccEEEEEEcCCCC
Q 021247          230 ------------AEGKSLVTA-----------------------------------------MSGHASWVLSVDASPDGA  256 (315)
Q Consensus       230 ------------~~~~~~~~~-----------------------------------------~~~~~~~i~~~~~~~~~~  256 (315)
                                  +..+.....                                         +.+|...+..++|+|+++
T Consensus       369 ~~s~dg~l~~~~~~~g~~~~~~~~~~~~l~~~~~~v~~~~~s~~~~~~w~~~~~~~~~~~~~l~G~~~~v~sv~~spdg~  448 (902)
T 2oaj_A          369 LILGNGEIETMLYPSGIFTDKASLFPQNLSWLRPLATTSMAASVPNKLWLGALSAAQNKDYLLKGGVRTKRQKLPAEYGT  448 (902)
T ss_dssp             EEETTSCEEEEETTTCCEECCGGGSCGGGTTBTTBEEEEEEEEEEHHHHHHHHHTTBCCCCSCCCSBCCCCCCCCCSEEE
T ss_pred             EEcCCCcEEEEECCCCCcccccccCCCcccccCCCeeEEEEEEcCHHHHHHHHhcccCCCCcccCCcCCCCcccccccCc
Confidence                        322211100                                         111222233345578899


Q ss_pred             eEEEEeCCCcEEEEecCccceeh--cc---------cccccceEEEEEeeCCCEEEEEeCCCcEEEeec
Q 021247          257 AITTGSSDRTVKLWDLNMRAAMQ--SM---------TNHTDQVWGVSFRPLGGRVVSVSDDKSISLYEY  314 (315)
Q Consensus       257 ~l~s~~~d~~i~iwd~~~~~~~~--~~---------~~~~~~v~~~~~s~~~~~l~s~~~d~~i~i~~~  314 (315)
                      +|+||+.|++|++||+..+....  .+         .+|...|++|+|+|+|++||+++.||+|+||++
T Consensus       449 ~laSgs~DgtVrlWd~~~g~~~~~~~~~~~l~~~~~~~h~~~V~svafspdg~~LAsgs~DgtV~lwd~  517 (902)
T 2oaj_A          449 AFITGHSNGSVRIYDASHGDIQDNASFEVNLSRTLNKAKELAVDKISFAAETLELAVSIETGDVVLFKY  517 (902)
T ss_dssp             EEEEEETTSEEEEEESSCCTTTTTBCEEEEHHHHTTCSSSCCEEEEEEETTTTEEEEEETTSCEEEEEE
T ss_pred             EEEEecCCCcEEEEECCCccccCCceEEeechhhcCCCCCCceeEEEecCCCCeEEEEecCcEEEEEEe
Confidence            99999999999999998764211  11         178889999999999999999999999999997

>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R

Probab=100.00  E-value=7.3e-39  Score=270.23  Aligned_cols=246  Identities=21%  Similarity=0.307  Sum_probs=204.5

Q ss_pred             ceeeccccccceEEEEe-----CC-CCCEEEEeeCCCeEEEEECCCC-------ceeEEeeCCcccEEEEEECCCCCeEE
Q 021247           52 LERTNTGHCLGVVSVAA-----HP-SGIIAASASLDSFVRVFDVDTN-------ASIATLEASPSEVWQMQFDPKGTTLA  118 (315)
Q Consensus        52 ~~~~~~~h~~~v~~~~~-----~~-~g~~l~s~~~d~~i~~w~~~~~-------~~~~~~~~~~~~v~~~~~~~~~~~~~  118 (315)
                      +...+.+|...|.++.|     ++ ++.+|++|+.|++|++||+...       .....+..|...|.+++|+|++.. +
T Consensus        13 ~~~~l~gH~~~V~~~~~~~s~~~~~d~~~l~sgs~D~~v~iWd~~~~~~~~~~~~~~~~l~~h~~~V~~~~~~~~~~~-l   91 (343)
T 2xzm_R           13 KRGILEGHSDWVTSIVAGFSQKENEDSPVLISGSRDKTVMIWKLYEEEQNGYFGIPHKALTGHNHFVSDLALSQENCF-A   91 (343)
T ss_dssp             EEEEEECCSSCEEEEEECCCSSTTCCCCEEEEEETTSCEEEEEECSSCCSSBSEEEEEEECCCSSCEEEEEECSSTTE-E
T ss_pred             eeeeeccchhhhhheeeEEEeecCCCCCEEEEEcCCCEEEEEECCcCCcccccccccchhccCCCceEEEEECCCCCE-E
Confidence            34567899999999999     66 8999999999999999999753       345677889999999999999875 5


Q ss_pred             EEecCCCeEEEEecCCcceeeeecCCCCCCCCCCccCCCCcceEEEEECCCCCEEEEecCCCcEEEEEcccceeeee--e
Q 021247          119 VAGGGSASVKLWDTATWNLIATLSIPRPEGLKPTDKSSSKKFVLSVAWSPDGRRIACGSMDGTISVFDVTRAKFLHH--L  196 (315)
Q Consensus       119 ~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~s~dg~i~i~d~~~~~~~~~--~  196 (315)
                      ++++.|++|++||+++++.+..+.             .|...|.+++|+|++++|++++.|+.|++||+........  .
T Consensus        92 ~s~s~D~~v~lwd~~~~~~~~~~~-------------~h~~~v~~v~~sp~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~  158 (343)
T 2xzm_R           92 ISSSWDKTLRLWDLRTGTTYKRFV-------------GHQSEVYSVAFSPDNRQILSAGAEREIKLWNILGECKFSSAEK  158 (343)
T ss_dssp             EEEETTSEEEEEETTSSCEEEEEE-------------CCCSCEEEEEECSSTTEEEEEETTSCEEEEESSSCEEEECCTT
T ss_pred             EEEcCCCcEEEEECCCCcEEEEEc-------------CCCCcEEEEEECCCCCEEEEEcCCCEEEEEeccCCceeeeecc
Confidence            688999999999999888776653             3455699999999999999999999999999974433222  2


Q ss_pred             cCCccceEEEEEcCCC---------CcEEEEEeCCCeEEEEeCCCCeeEEEeecccccEEEEEEcCCCCeEEEEeCCCcE
Q 021247          197 EGHFMPVRSLVYSPVD---------PRVLFSASDDTHVHMYDAEGKSLVTAMSGHASWVLSVDASPDGAAITTGSSDRTV  267 (315)
Q Consensus       197 ~~~~~~v~~~~~~~~~---------~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~d~~i  267 (315)
                      ..|...|.++.|+|..         ..++++++.|+.|++||. .......+.+|...|.+++|+|++++|++|+.|+.|
T Consensus       159 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~-~~~~~~~~~~h~~~v~~~~~s~~g~~l~sgs~dg~v  237 (343)
T 2xzm_R          159 ENHSDWVSCVRYSPIMKSANKVQPFAPYFASVGWDGRLKVWNT-NFQIRYTFKAHESNVNHLSISPNGKYIATGGKDKKL  237 (343)
T ss_dssp             TSCSSCEEEEEECCCCCSCSCCCSSCCEEEEEETTSEEEEEET-TTEEEEEEECCSSCEEEEEECTTSSEEEEEETTCEE
T ss_pred             cCCCceeeeeeeccccccccccCCCCCEEEEEcCCCEEEEEcC-CCceeEEEcCccccceEEEECCCCCEEEEEcCCCeE
Confidence            3688899999999854         268999999999999994 455667788999999999999999999999999999


Q ss_pred             EEEecCccc-eehcccccccceEEEEEeeCCCEEEEEeCCCcEEEeec
Q 021247          268 KLWDLNMRA-AMQSMTNHTDQVWGVSFRPLGGRVVSVSDDKSISLYEY  314 (315)
Q Consensus       268 ~iwd~~~~~-~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~i~i~~~  314 (315)
                      ++||+.... ....+ .+...|++++|+|++.+++ ++.|+.|+||++
T Consensus       238 ~iwd~~~~~~~~~~~-~~~~~v~~v~~sp~~~~la-~~~d~~v~iw~~  283 (343)
T 2xzm_R          238 LIWDILNLTYPQREF-DAGSTINQIAFNPKLQWVA-VGTDQGVKIFNL  283 (343)
T ss_dssp             EEEESSCCSSCSEEE-ECSSCEEEEEECSSSCEEE-EEESSCEEEEES
T ss_pred             EEEECCCCcccceee-cCCCcEEEEEECCCCCEEE-EECCCCEEEEEe
Confidence            999995433 33333 3456799999999987665 567888999986

>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}

Probab=100.00  E-value=4.4e-40  Score=308.73  Aligned_cols=299  Identities=14%  Similarity=0.192  Sum_probs=224.7

Q ss_pred             hhccccceEEEEEeecCCCCCcEEEEeeCCCcEEEEcCCCCcceeecccc------------------ccceEEEEeCCC
Q 021247           10 ENAHEESVWAVTWVPATETRPALLLTGSLDETVKLWRPDDMQLERTNTGH------------------CLGVVSVAAHPS   71 (315)
Q Consensus        10 ~~~h~~~v~~v~~~~~~~~~~~~l~sgs~d~~v~~w~~~~~~~~~~~~~h------------------~~~v~~~~~~~~   71 (315)
                      ..+|...|++++|+|...   ..+++|+.||.| +||..+.+..+.+.+|                  ...|.+++|+|+
T Consensus       147 ~~~h~~~V~sl~~sp~~~---~~l~~g~~dg~v-lWd~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~h~~~V~~v~fspd  222 (902)
T 2oaj_A          147 PAARLSPIVSIQWNPRDI---GTVLISYEYVTL-TYSLVENEIKQSFIYELPPFAPGGDFSEKTNEKRTPKVIQSLYHPN  222 (902)
T ss_dssp             SSSCCCCCCEEEEETTEE---EEEEEECSSCEE-EEETTTTEEEEEECCCBCTTCCCSTTCCCTTSCBCCCEEEEEECTT
T ss_pred             cccCCCCeEEEEEccCCC---CEEEEEeCCCcE-EEECCCCceEEEEecccCCcCCCcccccccccccCCCeEEEEEcCC
Confidence            468999999999999542   379999999999 9999887766655544                  578999999999


Q ss_pred             CCEEEEeeCCCeEEEEECCCCceeEE--ee---C-------------CcccEEEEEEC----CCCCeEEEEecCC-----
Q 021247           72 GIIAASASLDSFVRVFDVDTNASIAT--LE---A-------------SPSEVWQMQFD----PKGTTLAVAGGGS-----  124 (315)
Q Consensus        72 g~~l~s~~~d~~i~~w~~~~~~~~~~--~~---~-------------~~~~v~~~~~~----~~~~~~~~~~~~d-----  124 (315)
                      |.+|++++.|++|++||+.+++++..  +.   .             +..+|..++|+    |++..++++|+.+     
T Consensus       223 g~~lasgs~Dg~i~lWd~~~g~~~~~r~l~~~~~~~~~~~~~~~~~~~~~~V~~v~w~~~~~pd~~~ll~sg~~~~~~~~  302 (902)
T 2oaj_A          223 SLHIITIHEDNSLVFWDANSGHMIMARTVFETEINVPQPDYIRDSSTNAAKISKVYWMCENNPEYTSLLISHKSISRGDN  302 (902)
T ss_dssp             SSEEEEEETTCCEEEEETTTCCEEEEECSSCSCTTSCCTTCCCCCSSCCCEEEEEEEEECSSTTEEEEEEEEECSTTSSC
T ss_pred             CCEEEEEECCCeEEEEECCCCcEEEEEeecccccCCCCCcCCCCCccccCCeeEEEEEecCCCCCCEEEEeCCCCCCCCC
Confidence            99999999999999999999887653  21   1             23479999995    4444666777554     


Q ss_pred             CeEEEEecCC------------------cceeeeecC------------C---------C-------------------C
Q 021247          125 ASVKLWDTAT------------------WNLIATLSI------------P---------R-------------------P  146 (315)
Q Consensus       125 ~~i~~~d~~~------------------~~~~~~~~~------------~---------~-------------------~  146 (315)
                      ..+.+|++..                  .+....+..            +         .                   +
T Consensus       303 ~~v~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~sp~~~g~~d~~~l~~~s~dg~l~~~~~~  382 (902)
T 2oaj_A          303 QSLTMIDLGYTPRYSITSYEGMKNYYANPKQMKIFPLPTNVPIVNILPIPRQSPYFAGCHNPGLILLILGNGEIETMLYP  382 (902)
T ss_dssp             CCEEEEEEEECCCGGGCCHHHHHHHHHSCSEEEEECCSSSSCEEEEEECCSSCSHHHHTBSCSEEEEEETTSCEEEEETT
T ss_pred             ceEEEEecCCCCCccccchhhhhhhhcCccceEEEecCCCCceEEEEECCCCCCCcCCCCCceeEEEEcCCCcEEEEECC
Confidence            3677877310                  000000000            0         0                   0


Q ss_pred             CCC--CC-----C----------------------------------ccCCCCcceEEEEECCCCCEEEEecCCCcEEEE
Q 021247          147 EGL--KP-----T----------------------------------DKSSSKKFVLSVAWSPDGRRIACGSMDGTISVF  185 (315)
Q Consensus       147 ~~~--~~-----~----------------------------------~~~~~~~~i~~~~~~~~~~~l~~~s~dg~i~i~  185 (315)
                      .+.  ..     .                                  ...++...+..++|+|++++|++|+.|++|++|
T Consensus       383 ~g~~~~~~~~~~~~l~~~~~~v~~~~~s~~~~~~w~~~~~~~~~~~~~l~G~~~~v~sv~~spdg~~laSgs~DgtVrlW  462 (902)
T 2oaj_A          383 SGIFTDKASLFPQNLSWLRPLATTSMAASVPNKLWLGALSAAQNKDYLLKGGVRTKRQKLPAEYGTAFITGHSNGSVRIY  462 (902)
T ss_dssp             TCCEECCGGGSCGGGTTBTTBEEEEEEEEEEHHHHHHHHHTTBCCCCSCCCSBCCCCCCCCCSEEEEEEEEETTSEEEEE
T ss_pred             CCCcccccccCCCcccccCCCeeEEEEEEcCHHHHHHHHhcccCCCCcccCCcCCCCcccccccCcEEEEecCCCcEEEE
Confidence            000  00     0                                  001122233445667899999999999999999


Q ss_pred             Ecccceeee----e--ec-----CCccceEEEEEcCCCCcEEEEEeCCCeEEEEeCCCC---------------------
Q 021247          186 DVTRAKFLH----H--LE-----GHFMPVRSLVYSPVDPRVLFSASDDTHVHMYDAEGK---------------------  233 (315)
Q Consensus       186 d~~~~~~~~----~--~~-----~~~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~---------------------  233 (315)
                      |+.++....    .  +.     +|...|.+++|+| ++++|++|+.|++|++||..++                     
T Consensus       463 d~~~g~~~~~~~~~~~l~~~~~~~h~~~V~svafsp-dg~~LAsgs~DgtV~lwd~~~~~~~~~~~~~~~~~~~~~~~~~  541 (902)
T 2oaj_A          463 DASHGDIQDNASFEVNLSRTLNKAKELAVDKISFAA-ETLELAVSIETGDVVLFKYEVNQFYSVENRPESGDLEMNFRRF  541 (902)
T ss_dssp             ESSCCTTTTTBCEEEEHHHHTTCSSSCCEEEEEEET-TTTEEEEEETTSCEEEEEEEECCC---------------CCSC
T ss_pred             ECCCccccCCceEEeechhhcCCCCCCceeEEEecC-CCCeEEEEecCcEEEEEEecCccccCccccCCCcccceeeeec
Confidence            998764211    1  11     7888999999999 6789999999999999998654                     


Q ss_pred             ------------------------eeEEEeecccccEEEEEEcCCCCeEEEEeCCCcEEEEecCcccee-----hccc-c
Q 021247          234 ------------------------SLVTAMSGHASWVLSVDASPDGAAITTGSSDRTVKLWDLNMRAAM-----QSMT-N  283 (315)
Q Consensus       234 ------------------------~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~-----~~~~-~  283 (315)
                                              +++..+.+|.+.|++++|+|+| +||+|+.|++|++||++....+     ..+. +
T Consensus       542 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~h~~~V~svafSpdG-~lAsgs~D~tv~lwd~~~~~~~~~~~~~~~~~g  620 (902)
T 2oaj_A          542 SLNNTNGVLVDVRDRAPTGVRQGFMPSTAVHANKGKTSAINNSNIG-FVGIAYAAGSLMLIDRRGPAIIYMENIREISGA  620 (902)
T ss_dssp             CGGGSSCSEEECGGGCCTTCSEEEEEEEEECCCSCSEEEEEECBTS-EEEEEETTSEEEEEETTTTEEEEEEEGGGTCSS
T ss_pred             cccCCccccccccccCCCCCCCccceeEEEEcCCCcEEEEEecCCc-EEEEEeCCCcEEEEECCCCeEEEEeehhHhccc
Confidence                                    2356677899999999999999 9999999999999999876543     3454 8


Q ss_pred             cccceEEEEEe-----eCC---CEEEEEeCCCcEEEeec
Q 021247          284 HTDQVWGVSFR-----PLG---GRVVSVSDDKSISLYEY  314 (315)
Q Consensus       284 ~~~~v~~~~~s-----~~~---~~l~s~~~d~~i~i~~~  314 (315)
                      |.+.|++++|+     |||   .+|++++.|++|++||+
T Consensus       621 h~~~V~sv~Fs~~~~~~Dg~~~~~l~sgs~D~tv~~wd~  659 (902)
T 2oaj_A          621 QSACVTCIEFVIMEYGDDGYSSILMVCGTDMGEVITYKI  659 (902)
T ss_dssp             CCCCEEEEEEEEEECTTSSSEEEEEEEEETTSEEEEEEE
T ss_pred             cccceEEEEEEEEecCCCCCcceEEEEEecCCcEEEEEE
Confidence            99999999999     885   79999999999999996

>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A

Probab=100.00  E-value=7.8e-39  Score=289.74  Aligned_cols=282  Identities=18%  Similarity=0.260  Sum_probs=247.1

Q ss_pred             hhccccceEEEEEeecCCCCCcEEEEeeCCCcEEEEcCCCC----cceeeccccccc-eEEEEeCC--CCCEEEEeeCCC
Q 021247           10 ENAHEESVWAVTWVPATETRPALLLTGSLDETVKLWRPDDM----QLERTNTGHCLG-VVSVAAHP--SGIIAASASLDS   82 (315)
Q Consensus        10 ~~~h~~~v~~v~~~~~~~~~~~~l~sgs~d~~v~~w~~~~~----~~~~~~~~h~~~-v~~~~~~~--~g~~l~s~~~d~   82 (315)
                      ...|...|++++|+|+++    +|++++ |+.|++|+.++.    +....+.+|... |.+++|+|  ++.+|++++.|+
T Consensus        14 ~~~~~~~v~~~~~spdg~----~l~~~~-~~~v~v~~~~~~~~~~~~~~~~~~h~~~~v~~~~~sp~~~~~~l~s~~~dg   88 (615)
T 1pgu_A           14 PSTQRNFTTHLSYDPTTN----AIAYPC-GKSAFVRCLDDGDSKVPPVVQFTGHGSSVVTTVKFSPIKGSQYLCSGDESG   88 (615)
T ss_dssp             CCCCTTCCCCCEEETTTT----EEEEEE-TTEEEEEECCSSCCSSCSEEEECTTTTSCEEEEEECSSTTCCEEEEEETTS
T ss_pred             CCCccCceeEEEECCCCC----EEEEec-CCeEEEEECCCCCCccccceEEecCCCceEEEEEECcCCCCCEEEEecCCC
Confidence            458999999999999876    678877 899999999888    788888999999 99999999  999999999999


Q ss_pred             eEEEEECCCC--------ceeEEeeCCcccEEEEEECCCCCeEEEEecCC----CeEEEEecCCcceeeeecCCCCCCCC
Q 021247           83 FVRVFDVDTN--------ASIATLEASPSEVWQMQFDPKGTTLAVAGGGS----ASVKLWDTATWNLIATLSIPRPEGLK  150 (315)
Q Consensus        83 ~i~~w~~~~~--------~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d----~~i~~~d~~~~~~~~~~~~~~~~~~~  150 (315)
                      .|++||+.++        .....+..+..+|.+++|+|+++.++++ +.+    +.|.+||.  ++.+..+.        
T Consensus        89 ~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~-~~~~~~~~~v~~~d~--~~~~~~~~--------  157 (615)
T 1pgu_A           89 KVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCVV-GEGRDNFGVFISWDS--GNSLGEVS--------  157 (615)
T ss_dssp             EEEEEEEEEEGGGTEEEEEEEEEEECCSSCEEEEEECTTSSEEEEE-ECCSSCSEEEEETTT--CCEEEECC--------
T ss_pred             EEEEEeCCCCcccccccccccchhhcccccEEEEEEeCCCCEEEEe-ccCCCCccEEEEEEC--CCcceeee--------
Confidence            9999999754        5566778889999999999999977554 444    68999983  34444332        


Q ss_pred             CCccCCCCcceEEEEECCCCC-EEEEecCCCcEEEEEcccceeeeeecCCcc---ceEEEEEcCCCCcEEEEEeCCCeEE
Q 021247          151 PTDKSSSKKFVLSVAWSPDGR-RIACGSMDGTISVFDVTRAKFLHHLEGHFM---PVRSLVYSPVDPRVLFSASDDTHVH  226 (315)
Q Consensus       151 ~~~~~~~~~~i~~~~~~~~~~-~l~~~s~dg~i~i~d~~~~~~~~~~~~~~~---~v~~~~~~~~~~~~l~s~~~d~~i~  226 (315)
                           .|...|.+++|+|+++ .+++++.|+.|++||+.+++.+..+.+|..   .|.+++|+|.+++++++++.|+.|+
T Consensus       158 -----~~~~~v~~~~~~~~~~~~l~~~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~  232 (615)
T 1pgu_A          158 -----GHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKIS  232 (615)
T ss_dssp             -----SCSSCEEEEEECSSSSCEEEEEETTTEEEEEETTTBEEEEEECSSSCTTCCEEEEEECSTTCCEEEEEETTCCEE
T ss_pred             -----cCCccEEEEEECCCCCcEEEEEeCCCcEEEEeCCCcceeeeecccCCCCceEEEEEECCCCCCEEEEEeCCCeEE
Confidence                 3455699999999998 799999999999999999999999999999   9999999995388999999999999


Q ss_pred             EEeCCCCeeEEEe-e---cccccEEEEEEcCCCCeEEEEeCCCcEEEEecCccceehccccc----ccceEEEEEeeCCC
Q 021247          227 MYDAEGKSLVTAM-S---GHASWVLSVDASPDGAAITTGSSDRTVKLWDLNMRAAMQSMTNH----TDQVWGVSFRPLGG  298 (315)
Q Consensus       227 ~wd~~~~~~~~~~-~---~~~~~i~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~----~~~v~~~~~s~~~~  298 (315)
                      +||++.++.+..+ .   .|...|.+++|+ ++++|++++.|+.|++||+++++.+..+..+    ...+.++.|+ ++.
T Consensus       233 vwd~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~  310 (615)
T 1pgu_A          233 CFDGKSGEFLKYIEDDQEPVQGGIFALSWL-DSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVAT-GNG  310 (615)
T ss_dssp             EEETTTCCEEEECCBTTBCCCSCEEEEEES-SSSEEEEEETTSEEEEEETTTTEEEEEEECCTTCGGGCEEEEEEE-ETT
T ss_pred             EEECCCCCEeEEecccccccCCceEEEEEc-CCCEEEEEcCCCcEEEEECCCCcEEEEEcCCCCcccCceeEEEeC-CCC
Confidence            9999999888888 6   899999999999 9999999999999999999988887777665    4678888886 889


Q ss_pred             EEEEEeCCCcEEEeec
Q 021247          299 RVVSVSDDKSISLYEY  314 (315)
Q Consensus       299 ~l~s~~~d~~i~i~~~  314 (315)
                      ++++++.|+.|++||+
T Consensus       311 ~l~~~~~~g~i~~~d~  326 (615)
T 1pgu_A          311 RIISLSLDGTLNFYEL  326 (615)
T ss_dssp             EEEEEETTSCEEEEET
T ss_pred             eEEEEECCCCEEEEEC
Confidence            9999999999999996

>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*

Probab=100.00  E-value=2.2e-38  Score=277.83  Aligned_cols=277  Identities=22%  Similarity=0.359  Sum_probs=233.6

Q ss_pred             hhhccccceEEEEEeecCCCCCcEEEEeeCCCcEEEEcCCCCcceeeccccccceEEEEeC--CCCCEEEEeeCCCeEEE
Q 021247            9 VENAHEESVWAVTWVPATETRPALLLTGSLDETVKLWRPDDMQLERTNTGHCLGVVSVAAH--PSGIIAASASLDSFVRV   86 (315)
Q Consensus         9 ~~~~h~~~v~~v~~~~~~~~~~~~l~sgs~d~~v~~w~~~~~~~~~~~~~h~~~v~~~~~~--~~g~~l~s~~~d~~i~~   86 (315)
                      ...+|...|++++|+|..     ++++|+.||+|++||..+.+....+.+|..+|.+++++  +++.++++++.|++|++
T Consensus       157 ~~~~h~~~V~~l~~~~~~-----~l~s~s~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~l~s~s~d~~i~v  231 (464)
T 3v7d_B          157 QLSGHDGGVWALKYAHGG-----ILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHV  231 (464)
T ss_dssp             EECCCSSCEEEEEECSTT-----EEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEEESSSCEEEEEEETTSCEEE
T ss_pred             EEeCCCcCEEEEEEcCCC-----EEEEEeCCCCEEEEECCCCcEEEEECCCCCccEEEEEecCCCCCEEEEEcCCCcEEE
Confidence            356899999999998754     79999999999999999988888889999999999988  67899999999999999


Q ss_pred             EECCCCce-----------------------eEEeeCCcccEEEEEECCCCCeEEEEecCCCeEEEEecCCcceeeeecC
Q 021247           87 FDVDTNAS-----------------------IATLEASPSEVWQMQFDPKGTTLAVAGGGSASVKLWDTATWNLIATLSI  143 (315)
Q Consensus        87 w~~~~~~~-----------------------~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~  143 (315)
                      ||+.+...                       +..+..|...+.++.  ++++ ++++++.|+.|++||+++++.+..+. 
T Consensus       232 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~--~~~~-~l~~~~~d~~i~vwd~~~~~~~~~~~-  307 (464)
T 3v7d_B          232 WKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTVS--GHGN-IVVSGSYDNTLIVWDVAQMKCLYILS-  307 (464)
T ss_dssp             EECCCCCCC------CCSSEEESCGGGCTTEEEEECCCSSCEEEEE--EETT-EEEEEETTSCEEEEETTTTEEEEEEC-
T ss_pred             eeCCCCcccccccccCCcceEeeccCCCeEEEEEccCccceEEEEc--CCCC-EEEEEeCCCeEEEEECCCCcEEEEec-
Confidence            99987653                       345666777777764  4555 45678899999999999888776663 


Q ss_pred             CCCCCCCCCccCCCCcceEEEEECCCCCEEEEecCCCcEEEEEcccceeeeeecCCccceEEEEEcCCCCcEEEEEeCCC
Q 021247          144 PRPEGLKPTDKSSSKKFVLSVAWSPDGRRIACGSMDGTISVFDVTRAKFLHHLEGHFMPVRSLVYSPVDPRVLFSASDDT  223 (315)
Q Consensus       144 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~s~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~  223 (315)
                                  .|...|.+++|+|+++++++|+.||.|++||+++++.+..+.+|...|.++.|++   .++++++.|+
T Consensus       308 ------------~~~~~v~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~---~~l~s~s~dg  372 (464)
T 3v7d_B          308 ------------GHTDRIYSTIYDHERKRCISASMDTTIRIWDLENGELMYTLQGHTALVGLLRLSD---KFLVSAAADG  372 (464)
T ss_dssp             ------------CCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECS---SEEEEEETTS
T ss_pred             ------------CCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEEeCCCCcEEEEEEcC---CEEEEEeCCC
Confidence                        2345599999999999999999999999999999999999999999999999973   6899999999


Q ss_pred             eEEEEeCCCCeeEEEeecccccEEEEEEcCCCCeEEEEeCCCcEEEEecCccceehc-ccccccceEEEEEeeCCCEEEE
Q 021247          224 HVHMYDAEGKSLVTAMSGHASWVLSVDASPDGAAITTGSSDRTVKLWDLNMRAAMQS-MTNHTDQVWGVSFRPLGGRVVS  302 (315)
Q Consensus       224 ~i~~wd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~-~~~~~~~v~~~~~s~~~~~l~s  302 (315)
                      .|++||+++....... .|...+..++++|+++++++|+ |+.|++||+++++.+.. +..|...|++++|+ ....+++
T Consensus       373 ~v~vwd~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~~-dg~i~iwd~~~g~~~~~~~~~~~~~v~~v~~~-~~~l~~~  449 (464)
T 3v7d_B          373 SIRGWDANDYSRKFSY-HHTNLSAITTFYVSDNILVSGS-ENQFNIYNLRSGKLVHANILKDADQIWSVNFK-GKTLVAA  449 (464)
T ss_dssp             EEEEEETTTCCEEEEE-ECTTCCCEEEEEECSSEEEEEE-TTEEEEEETTTCCEEESCTTTTCSEEEEEEEE-TTEEEEE
T ss_pred             cEEEEECCCCceeeee-cCCCCccEEEEEeCCCEEEEec-CCeEEEEECCCCcEEehhhccCCCcEEEEEec-CCEEEEE
Confidence            9999999987655444 3566677889999999999988 99999999999988875 66788999999997 3344556


Q ss_pred             EeCCCcEEEe
Q 021247          303 VSDDKSISLY  312 (315)
Q Consensus       303 ~~~d~~i~i~  312 (315)
                      ++.||.+.+|
T Consensus       450 ~~~~g~~~i~  459 (464)
T 3v7d_B          450 VEKDGQSFLE  459 (464)
T ss_dssp             EEETTEEEEE
T ss_pred             EEeCCeEEEE
Confidence            6777755544

>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A

Probab=100.00  E-value=9.4e-40  Score=281.53  Aligned_cols=280  Identities=19%  Similarity=0.272  Sum_probs=229.7

Q ss_pred             EEEEEeecCCCCCcEEEEeeCCCcEEEEcCCCC----cceeeccccccceEEEEeCC-CCCEEEEeeCCCeEEEEECCCC
Q 021247           18 WAVTWVPATETRPALLLTGSLDETVKLWRPDDM----QLERTNTGHCLGVVSVAAHP-SGIIAASASLDSFVRVFDVDTN   92 (315)
Q Consensus        18 ~~v~~~~~~~~~~~~l~sgs~d~~v~~w~~~~~----~~~~~~~~h~~~v~~~~~~~-~g~~l~s~~~d~~i~~w~~~~~   92 (315)
                      ..++++|..   ..++++|+.||.|++|+....    .....+.+|..+|.+++|+| ++.+|++++.|++|++||+.++
T Consensus        38 ~~~~~~~~~---~~~~~~~~~~g~i~v~~~~~~~~~~~~~~~~~~h~~~V~~~~~~p~~~~~l~s~s~dg~v~vw~~~~~  114 (402)
T 2aq5_A           38 GFCAVNPKF---MALICEASGGGAFLVLPLGKTGRVDKNVPLVCGHTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPDG  114 (402)
T ss_dssp             CSEEECSSE---EEEEBCCSSSCCEEEEETTCCEECCTTCCCBCCCSSCEEEEEECTTCTTEEEEEETTSEEEEEECCTT
T ss_pred             CcEEECCCe---EEEEEEEcCCCEEEEEECccCCCCCCCCceEecCCCCEEEEEeCCCCCCEEEEEeCCCeEEEEEccCC
Confidence            345565533   246667899999999998653    23445678999999999999 8999999999999999999987


Q ss_pred             -------ceeEEeeCCcccEEEEEECCCCCeEEEEecCCCeEEEEecCCcceeeeecCCCCCCCCCCccCCCCcceEEEE
Q 021247           93 -------ASIATLEASPSEVWQMQFDPKGTTLAVAGGGSASVKLWDTATWNLIATLSIPRPEGLKPTDKSSSKKFVLSVA  165 (315)
Q Consensus        93 -------~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~  165 (315)
                             ..+..+..|...|.+++|+|++..++++++.|+.|++||+++++.+..+..           ..|...|.+++
T Consensus       115 ~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~-----------~~~~~~v~~~~  183 (402)
T 2aq5_A          115 GLVLPLREPVITLEGHTKRVGIVAWHPTAQNVLLSAGCDNVILVWDVGTGAAVLTLGP-----------DVHPDTIYSVD  183 (402)
T ss_dssp             CCSSCBCSCSEEEECCSSCEEEEEECSSBTTEEEEEETTSCEEEEETTTTEEEEEECT-----------TTCCSCEEEEE
T ss_pred             CCccccCCceEEecCCCCeEEEEEECcCCCCEEEEEcCCCEEEEEECCCCCccEEEec-----------CCCCCceEEEE
Confidence                   567788899999999999999866778899999999999998877766521           12445699999


Q ss_pred             ECCCCCEEEEecCCCcEEEEEcccceeeeee-cCCccc-eEEEEEcCCCCcEEEEE---eCCCeEEEEeCCCCee-EEE-
Q 021247          166 WSPDGRRIACGSMDGTISVFDVTRAKFLHHL-EGHFMP-VRSLVYSPVDPRVLFSA---SDDTHVHMYDAEGKSL-VTA-  238 (315)
Q Consensus       166 ~~~~~~~l~~~s~dg~i~i~d~~~~~~~~~~-~~~~~~-v~~~~~~~~~~~~l~s~---~~d~~i~~wd~~~~~~-~~~-  238 (315)
                      |+|++++|++++.|+.|++||+++++.+..+ ..|... +..+.|+| ++++++++   +.|+.|++||.+.... +.. 
T Consensus       184 ~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~g~~~~~d~~i~iwd~~~~~~~~~~~  262 (402)
T 2aq5_A          184 WSRDGALICTSCRDKRVRVIEPRKGTVVAEKDRPHEGTRPVHAVFVS-EGKILTTGFSRMSERQVALWDTKHLEEPLSLQ  262 (402)
T ss_dssp             ECTTSSCEEEEETTSEEEEEETTTTEEEEEEECSSCSSSCCEEEECS-TTEEEEEEECTTCCEEEEEEETTBCSSCSEEE
T ss_pred             ECCCCCEEEEEecCCcEEEEeCCCCceeeeeccCCCCCcceEEEEcC-CCcEEEEeccCCCCceEEEEcCccccCCceEE
Confidence            9999999999999999999999999988888 678765 89999998 67788888   7899999999987543 222 


Q ss_pred             eecccccEEEEEEcCCCCeEEE-EeCCCcEEEEecCccce-ehcccc--cccceEEEEEeeCCCEEEEEeCCCcEEEeec
Q 021247          239 MSGHASWVLSVDASPDGAAITT-GSSDRTVKLWDLNMRAA-MQSMTN--HTDQVWGVSFRPLGGRVVSVSDDKSISLYEY  314 (315)
Q Consensus       239 ~~~~~~~i~~~~~~~~~~~l~s-~~~d~~i~iwd~~~~~~-~~~~~~--~~~~v~~~~~s~~~~~l~s~~~d~~i~i~~~  314 (315)
                      ...|...+.+++|+|++++|++ |+.|+.|++||+..++. +..+..  |...+.+++|+|++.++++  .++.+++|++
T Consensus       263 ~~~~~~~v~~~~~s~~~~~l~~~g~~dg~i~i~d~~~~~~~~~~l~~~~~~~~v~~~~~sp~~~~~~s--~~~~~~~~~l  340 (402)
T 2aq5_A          263 ELDTSSGVLLPFFDPDTNIVYLCGKGDSSIRYFEITSEAPFLHYLSMFSSKESQRGMGYMPKRGLEVN--KCEIARFYKL  340 (402)
T ss_dssp             ECCCCSSCEEEEEETTTTEEEEEETTCSCEEEEEECSSTTCEEEEEEECCSSCCSEEEECCGGGSCGG--GTEEEEEEEE
T ss_pred             eccCCCceeEEEEcCCCCEEEEEEcCCCeEEEEEecCCCcceEeecccccCCcccceEEeccccccee--cceeEEEEEc
Confidence            2357778999999999998864 55799999999998764 444444  4589999999999987764  5679999986

>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.2e-38  Score=271.58  Aligned_cols=251  Identities=22%  Similarity=0.382  Sum_probs=211.6

Q ss_pred             ceeeccccccceEEEEeCCCCCEEEEeeCCCeEEEEECC--CCceeEEeeCCcccEEEEEECCC--CCeEEEEecCCCeE
Q 021247           52 LERTNTGHCLGVVSVAAHPSGIIAASASLDSFVRVFDVD--TNASIATLEASPSEVWQMQFDPK--GTTLAVAGGGSASV  127 (315)
Q Consensus        52 ~~~~~~~h~~~v~~~~~~~~g~~l~s~~~d~~i~~w~~~--~~~~~~~~~~~~~~v~~~~~~~~--~~~~~~~~~~d~~i  127 (315)
                      +...+.+|..+|.+++|+|++.+|++++.|+.|++||+.  +...+..+..|..+|.+++|+|+  ++ ++++++.|+.|
T Consensus         3 ~~~~~~~h~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~-~l~s~~~dg~v   81 (379)
T 3jrp_A            3 MVVIANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGT-ILASCSYDGKV   81 (379)
T ss_dssp             --CCEEECCCCEEEEEECSSSSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCS-EEEEEETTSCE
T ss_pred             ccEEecCCcccEEEEEEcCCCCEEEEEECCCcEEEEecCCCcceeeeEecCCCCcEEEEEeCCCCCCC-EEEEeccCCEE
Confidence            445677899999999999999999999999999999998  44566778889999999999876  55 55788899999


Q ss_pred             EEEecCCcceeeeecCCCCCCCCCCccCCCCcceEEEEECCC--CCEEEEecCCCcEEEEEcccce--eeeeecCCccce
Q 021247          128 KLWDTATWNLIATLSIPRPEGLKPTDKSSSKKFVLSVAWSPD--GRRIACGSMDGTISVFDVTRAK--FLHHLEGHFMPV  203 (315)
Q Consensus       128 ~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~--~~~l~~~s~dg~i~i~d~~~~~--~~~~~~~~~~~v  203 (315)
                      ++||+.+++.......           ..+...|.+++|+|+  +++|++++.|+.|++||++...  ....+..|...|
T Consensus        82 ~iwd~~~~~~~~~~~~-----------~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~v  150 (379)
T 3jrp_A           82 LIWKEENGRWSQIAVH-----------AVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGV  150 (379)
T ss_dssp             EEEEEETTEEEEEEEE-----------CCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCTTSCCCEEEEECCTTCE
T ss_pred             EEEEcCCCceeEeeee-----------cCCCcceEEEEeCCCCCCCEEEEecCCCcEEEEecCCCCceeeEEecCCCCce
Confidence            9999988763222211           124456999999999  9999999999999999998763  344567899999


Q ss_pred             EEEEEcCC------------CCcEEEEEeCCCeEEEEeCCCCe----eEEEeecccccEEEEEEcCC---CCeEEEEeCC
Q 021247          204 RSLVYSPV------------DPRVLFSASDDTHVHMYDAEGKS----LVTAMSGHASWVLSVDASPD---GAAITTGSSD  264 (315)
Q Consensus       204 ~~~~~~~~------------~~~~l~s~~~d~~i~~wd~~~~~----~~~~~~~~~~~i~~~~~~~~---~~~l~s~~~d  264 (315)
                      .++.|+|.            ++.++++++.|+.|++||++...    ....+.+|...|.+++|+|+   +.+|++++.|
T Consensus       151 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~d  230 (379)
T 3jrp_A          151 NSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQD  230 (379)
T ss_dssp             EEEEECCCC----------CTTCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEETT
T ss_pred             EEEEEcCccccccccccCCCCCCEEEEEeCCCeEEEEEecCCCcceeeEEEEecccCcEeEEEECCCCCCCCeEEEEeCC
Confidence            99999995            57899999999999999987543    45567789999999999999   8999999999


Q ss_pred             CcEEEEecCccc-----eehcccccccceEEEEEeeCCCEEEEEeCCCcEEEeec
Q 021247          265 RTVKLWDLNMRA-----AMQSMTNHTDQVWGVSFRPLGGRVVSVSDDKSISLYEY  314 (315)
Q Consensus       265 ~~i~iwd~~~~~-----~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~i~i~~~  314 (315)
                      |.|++||++.+.     .+.....|...|++++|+|+|++|++++.||.|+||++
T Consensus       231 g~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iw~~  285 (379)
T 3jrp_A          231 RTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKE  285 (379)
T ss_dssp             SCEEEEEESSTTSCCEEEESSSSCCSSCEEEEEECSSSCCEEEEESSSSEEEEEE
T ss_pred             CEEEEEeCCCCCccceeeeeccccCCCcEEEEEEcCCCCEEEEecCCCcEEEEeC
Confidence            999999998753     23334458889999999999999999999999999996

>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*

Probab=100.00  E-value=7.8e-38  Score=304.37  Aligned_cols=297  Identities=19%  Similarity=0.321  Sum_probs=253.3

Q ss_pred             hhccccceEEEEEeecCCCCCcEEEEeeCCCcEEEEcCCCCcceeeccccccceEEEEeCC--CCCEEEEeeCCCeEEEE
Q 021247           10 ENAHEESVWAVTWVPATETRPALLLTGSLDETVKLWRPDDMQLERTNTGHCLGVVSVAAHP--SGIIAASASLDSFVRVF   87 (315)
Q Consensus        10 ~~~h~~~v~~v~~~~~~~~~~~~l~sgs~d~~v~~w~~~~~~~~~~~~~h~~~v~~~~~~~--~g~~l~s~~~d~~i~~w   87 (315)
                      ..+|.+.|++++|+|++.    +|++|+.|+.|++||..+++....+.+|...|.++.|+|  ++.++++++.|+.|++|
T Consensus       653 ~~~h~~~v~~~~~s~~~~----~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~sg~~d~~v~vw  728 (1249)
T 3sfz_A          653 IKAHEDEVLCCAFSSDDS----YIATCSADKKVKIWDSATGKLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLW  728 (1249)
T ss_dssp             ECCCSSCEEEEEECTTSS----EEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSSSCCEEEEEETTSCEEEE
T ss_pred             eccCCCCEEEEEEecCCC----EEEEEeCCCeEEEEECCCCceEEEEcCCCCcEEEEEEecCCCceEEEEEeCCCeEEEE
Confidence            468999999999999765    799999999999999999998889999999999999999  55689999999999999


Q ss_pred             ECCCCceeEEeeCCcccEEEEEECCCCCeEEEEecCCCeEEEEecCCcceeeeecCCCCCCC-----------------C
Q 021247           88 DVDTNASIATLEASPSEVWQMQFDPKGTTLAVAGGGSASVKLWDTATWNLIATLSIPRPEGL-----------------K  150 (315)
Q Consensus        88 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~-----------------~  150 (315)
                      |+.++.++..+..|...|.+++|+|+++.+ ++++.|++|++||+++++....+........                 .
T Consensus       729 d~~~~~~~~~~~~h~~~v~~~~~sp~~~~l-~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s  807 (1249)
T 3sfz_A          729 DLNQKECRNTMFGHTNSVNHCRFSPDDELL-ASCSADGTLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWS  807 (1249)
T ss_dssp             ETTSSSEEEEECCCSSCEEEEEECSSTTEE-EEEESSSEEEEEEGGGTEEEEEEECCCCC--------CCCCCBCCCCBC
T ss_pred             ECCCcchhheecCCCCCEEEEEEecCCCEE-EEEECCCeEEEEeCCCCcccceecccccccccCCccccccceEEEEEEC
Confidence            999999999999999999999999998854 6788999999999998776655533210000                 0


Q ss_pred             -------------------------CCccCCCCcceEEEEECCCCCEEEEecCCCcEEEEEcccceeeeeecCCccceEE
Q 021247          151 -------------------------PTDKSSSKKFVLSVAWSPDGRRIACGSMDGTISVFDVTRAKFLHHLEGHFMPVRS  205 (315)
Q Consensus       151 -------------------------~~~~~~~~~~i~~~~~~~~~~~l~~~s~dg~i~i~d~~~~~~~~~~~~~~~~v~~  205 (315)
                                               ......+...+.+++|+|+++++++++.|+.|++||+.++.....+.+|...|.+
T Consensus       808 ~dg~~l~~~~~~~v~~~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~h~~~v~~  887 (1249)
T 3sfz_A          808 ADGDKIIVAAKNKVLLFDIHTSGLLAEIHTGHHSTIQYCDFSPYDHLAVIALSQYCVELWNIDSRLKVADCRGHLSWVHG  887 (1249)
T ss_dssp             TTSSEEEEEETTEEEEEETTTCCEEEEEECSSSSCCCEEEECSSTTEEEEECSSSCEEEEETTTTEEEEEECCCSSCEEE
T ss_pred             CCCCEEEEEcCCcEEEEEecCCCceeEEcCCCCCceEEEEEcCCCCEEEEEeCCCeEEEEEcCCCceeeecCCCccceEE
Confidence                                     0001145567889999999999999999999999999999999999999999999


Q ss_pred             EEEcCCCCcEEEEEeCCCeEEEEeCC------------------------------------------------------
Q 021247          206 LVYSPVDPRVLFSASDDTHVHMYDAE------------------------------------------------------  231 (315)
Q Consensus       206 ~~~~~~~~~~l~s~~~d~~i~~wd~~------------------------------------------------------  231 (315)
                      +.|+| ++.++++++.|+.|++||..                                                      
T Consensus       888 v~~sp-dg~~l~s~s~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~  966 (1249)
T 3sfz_A          888 VMFSP-DGSSFLTASDDQTIRVWETKKVCKNSAIVLKQEIDVVFQENETMVLAVDNIRGLQLIAGKTGQIDYLPEAQVSC  966 (1249)
T ss_dssp             EEECT-TSSEEEEEETTSCEEEEEHHHHHSCCSSSEEEEEEEEEETTEEEEEEEESSSSEEEEEESSCCEEEECCSCEEE
T ss_pred             EEECC-CCCEEEEEeCCCeEEEEEccccceeeeecccceeeEEEcCCCcEEEEecCCcceEEEecCcceEEEcccCcEEE
Confidence            99998 67789999999999999842                                                      


Q ss_pred             -------------------------CCeeEEEeecccccEEEEEEcCCCCeEEEEeCCCcEEEEecCccceehccccccc
Q 021247          232 -------------------------GKSLVTAMSGHASWVLSVDASPDGAAITTGSSDRTVKLWDLNMRAAMQSMTNHTD  286 (315)
Q Consensus       232 -------------------------~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~  286 (315)
                                               .+.....+.+|...|.+++|+|++++|++++.|+.|++||+.+++... ...|..
T Consensus       967 ~~~sp~g~~l~~g~~~g~i~i~d~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~dg~i~vwd~~~~~~~~-~~~~~~ 1045 (1249)
T 3sfz_A          967 CCLSPHLEYVAFGDEDGAIKIIELPNNRVFSSGVGHKKAVRHIQFTADGKTLISSSEDSVIQVWNWQTGDYVF-LQAHQE 1045 (1249)
T ss_dssp             EEECTTSSEEEEEETTSCCEEEETTTTSCEEECCCCSSCCCCEEECSSSSCEEEECSSSBEEEEETTTTEEEC-CBCCSS
T ss_pred             EEEcCCCCEEEEEcCCCCEEEEEcCCCceeeecccCCCceEEEEECCCCCEEEEEcCCCEEEEEECCCCceEE-EecCCC
Confidence                                     122233445688899999999999999999999999999999887664 457889


Q ss_pred             ceEEEEEeeCCCEEEEEeCCCcEEEeec
Q 021247          287 QVWGVSFRPLGGRVVSVSDDKSISLYEY  314 (315)
Q Consensus       287 ~v~~~~~s~~~~~l~s~~~d~~i~i~~~  314 (315)
                      .+.++.|+|++ .+++++.|++|++||+
T Consensus      1046 ~v~~~~~~~~~-~l~~~~~dg~v~vwd~ 1072 (1249)
T 3sfz_A         1046 TVKDFRLLQDS-RLLSWSFDGTVKVWNV 1072 (1249)
T ss_dssp             CEEEEEECSSS-EEEEEESSSEEEEEET
T ss_pred             cEEEEEEcCCC-cEEEEECCCcEEEEEC
Confidence            99999999965 6899999999999996

>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1e-38  Score=272.06  Aligned_cols=252  Identities=23%  Similarity=0.297  Sum_probs=212.1

Q ss_pred             hhhhhccccceEEEEEeecCCCCCcEEEEeeCCCcEEEEcCC--CCcceeeccccccceEEEEeCCC--CCEEEEeeCCC
Q 021247            7 KSVENAHEESVWAVTWVPATETRPALLLTGSLDETVKLWRPD--DMQLERTNTGHCLGVVSVAAHPS--GIIAASASLDS   82 (315)
Q Consensus         7 ~~~~~~h~~~v~~v~~~~~~~~~~~~l~sgs~d~~v~~w~~~--~~~~~~~~~~h~~~v~~~~~~~~--g~~l~s~~~d~   82 (315)
                      ..++.+|.+.|++++|+|++.    +|++|+.||.|++|+..  +.+....+.+|..+|.+++|+++  +.+|++++.|+
T Consensus         4 ~~~~~~h~~~v~~~~~s~~~~----~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg   79 (379)
T 3jrp_A            4 VVIANAHNELIHDAVLDYYGK----RLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDG   79 (379)
T ss_dssp             -CCEEECCCCEEEEEECSSSS----EEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTS
T ss_pred             cEEecCCcccEEEEEEcCCCC----EEEEEECCCcEEEEecCCCcceeeeEecCCCCcEEEEEeCCCCCCCEEEEeccCC
Confidence            346689999999999999765    79999999999999987  45566678899999999999987  99999999999


Q ss_pred             eEEEEECCCCc--eeEEeeCCcccEEEEEECCC--CCeEEEEecCCCeEEEEecCCcceeeeecCCCCCCCCCCccCCCC
Q 021247           83 FVRVFDVDTNA--SIATLEASPSEVWQMQFDPK--GTTLAVAGGGSASVKLWDTATWNLIATLSIPRPEGLKPTDKSSSK  158 (315)
Q Consensus        83 ~i~~w~~~~~~--~~~~~~~~~~~v~~~~~~~~--~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~  158 (315)
                      .|++||+.+++  .+..+..|...|.+++|+|+  +.. +++++.|+.|++||++..+......           ...+.
T Consensus        80 ~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~-l~~~~~d~~i~v~d~~~~~~~~~~~-----------~~~~~  147 (379)
T 3jrp_A           80 KVLIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPL-LLVASSDGKVSVVEFKENGTTSPII-----------IDAHA  147 (379)
T ss_dssp             CEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSE-EEEEETTSEEEEEECCTTSCCCEEE-----------EECCT
T ss_pred             EEEEEEcCCCceeEeeeecCCCcceEEEEeCCCCCCCE-EEEecCCCcEEEEecCCCCceeeEE-----------ecCCC
Confidence            99999999987  66777788899999999998  664 5678899999999998754332221           12345


Q ss_pred             cceEEEEECC-------------CCCEEEEecCCCcEEEEEcccce----eeeeecCCccceEEEEEcCCC--CcEEEEE
Q 021247          159 KFVLSVAWSP-------------DGRRIACGSMDGTISVFDVTRAK----FLHHLEGHFMPVRSLVYSPVD--PRVLFSA  219 (315)
Q Consensus       159 ~~i~~~~~~~-------------~~~~l~~~s~dg~i~i~d~~~~~----~~~~~~~~~~~v~~~~~~~~~--~~~l~s~  219 (315)
                      ..|.+++|+|             ++++|++++.|+.|++||++++.    ....+.+|...|.+++|+|.+  +.+|+++
T Consensus       148 ~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~  227 (379)
T 3jrp_A          148 IGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASV  227 (379)
T ss_dssp             TCEEEEEECCCC----------CTTCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEE
T ss_pred             CceEEEEEcCccccccccccCCCCCCEEEEEeCCCeEEEEEecCCCcceeeEEEEecccCcEeEEEECCCCCCCCeEEEE
Confidence            5699999999             69999999999999999997653    456778899999999999954  7899999


Q ss_pred             eCCCeEEEEeCCCCe---eEE--EeecccccEEEEEEcCCCCeEEEEeCCCcEEEEecCc
Q 021247          220 SDDTHVHMYDAEGKS---LVT--AMSGHASWVLSVDASPDGAAITTGSSDRTVKLWDLNM  274 (315)
Q Consensus       220 ~~d~~i~~wd~~~~~---~~~--~~~~~~~~i~~~~~~~~~~~l~s~~~d~~i~iwd~~~  274 (315)
                      +.|+.|++||++.+.   ...  ....|...|.+++|+|++++|++++.||.|++|+++.
T Consensus       228 ~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iw~~~~  287 (379)
T 3jrp_A          228 SQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKENL  287 (379)
T ss_dssp             ETTSCEEEEEESSTTSCCEEEESSSSCCSSCEEEEEECSSSCCEEEEESSSSEEEEEEEE
T ss_pred             eCCCEEEEEeCCCCCccceeeeeccccCCCcEEEEEEcCCCCEEEEecCCCcEEEEeCCC
Confidence            999999999988753   122  2234888999999999999999999999999999873

>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C

Probab=100.00  E-value=2e-37  Score=263.63  Aligned_cols=244  Identities=21%  Similarity=0.248  Sum_probs=213.8

Q ss_pred             cccccceEEEEeCCCCCEEEEeeCCCeEEEEECCCCc--eeEEeeCCcccEEEEEECCCCCeEEEEecCCCeEEEEecCC
Q 021247           57 TGHCLGVVSVAAHPSGIIAASASLDSFVRVFDVDTNA--SIATLEASPSEVWQMQFDPKGTTLAVAGGGSASVKLWDTAT  134 (315)
Q Consensus        57 ~~h~~~v~~~~~~~~g~~l~s~~~d~~i~~w~~~~~~--~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~~d~~~  134 (315)
                      ..|..+|.+++|+|++.++++++.|+.|++||+.+++  .+..+..|...|.+++|+|+++.+ ++++.|+.|++||+.+
T Consensus         5 ~~~~~~i~~~~~s~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l-~~~~~dg~i~vwd~~~   83 (372)
T 1k8k_C            5 SFLVEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRI-VTCGTDRNAYVWTLKG   83 (372)
T ss_dssp             ESCSSCCCEEEECTTSSEEEEECSSSEEEEEEEETTEEEEEEEEECCSSCEEEEEEETTTTEE-EEEETTSCEEEEEEET
T ss_pred             cccCCCeEEEEECCCCCEEEEEeCCCEEEEEeCCCCcEEeeeeecCCCCcccEEEEeCCCCEE-EEEcCCCeEEEEECCC
Confidence            3488899999999999999999999999999999887  778888899999999999998865 6778999999999987


Q ss_pred             cceeeeecCCCCCCCCCCccCCCCcceEEEEECCCCCEEEEecCCCcEEEEEccccee----eeeecCCccceEEEEEcC
Q 021247          135 WNLIATLSIPRPEGLKPTDKSSSKKFVLSVAWSPDGRRIACGSMDGTISVFDVTRAKF----LHHLEGHFMPVRSLVYSP  210 (315)
Q Consensus       135 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~s~dg~i~i~d~~~~~~----~~~~~~~~~~v~~~~~~~  210 (315)
                      .+.......           ..+...|.+++|+|++++|++++.|+.|++||+..+..    ......|...|.++.|+|
T Consensus        84 ~~~~~~~~~-----------~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~  152 (372)
T 1k8k_C           84 RTWKPTLVI-----------LRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHP  152 (372)
T ss_dssp             TEEEEEEEC-----------CCCSSCEEEEEECTTSSEEEEEETTSSEEEEEEETTTTEEEEEEECTTCCSCEEEEEECT
T ss_pred             CeeeeeEEe-----------ecCCCceeEEEECCCCCEEEEEeCCCEEEEEEecCCCcceeeeeeecccCCCeeEEEEcC
Confidence            765544322           12345699999999999999999999999999987652    233356889999999999


Q ss_pred             CCCcEEEEEeCCCeEEEEeCC------------------CCeeEEEeecccccEEEEEEcCCCCeEEEEeCCCcEEEEec
Q 021247          211 VDPRVLFSASDDTHVHMYDAE------------------GKSLVTAMSGHASWVLSVDASPDGAAITTGSSDRTVKLWDL  272 (315)
Q Consensus       211 ~~~~~l~s~~~d~~i~~wd~~------------------~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~d~~i~iwd~  272 (315)
                       +++++++++.|+.|++||++                  .++.+..+.+|...|.+++|+|++++|++++.|+.|++||+
T Consensus       153 -~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~  231 (372)
T 1k8k_C          153 -NSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHDSTVCLADA  231 (372)
T ss_dssp             -TSSEEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSSSEEEEEETTTEEEEEEG
T ss_pred             -CCCEEEEEcCCCCEEEEEcccccccccccccccccccchhhheEecCCCCCeEEEEEECCCCCEEEEEeCCCEEEEEEC
Confidence             67899999999999999953                  56777888899999999999999999999999999999999


Q ss_pred             CccceehcccccccceEEEEEeeCCCEEEEEeCCCcEEEeec
Q 021247          273 NMRAAMQSMTNHTDQVWGVSFRPLGGRVVSVSDDKSISLYEY  314 (315)
Q Consensus       273 ~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~i~i~~~  314 (315)
                      +.++.+..+..|...+.+++|+|++.+|+++ .|+.|++|++
T Consensus       232 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~d~~i~i~~~  272 (372)
T 1k8k_C          232 DKKMAVATLASETLPLLAVTFITESSLVAAG-HDCFPVLFTY  272 (372)
T ss_dssp             GGTTEEEEEECSSCCEEEEEEEETTEEEEEE-TTSSCEEEEE
T ss_pred             CCCceeEEEccCCCCeEEEEEecCCCEEEEE-eCCeEEEEEc
Confidence            9999999999999999999999999877766 9999999986

>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*

Probab=100.00  E-value=9.7e-38  Score=267.14  Aligned_cols=250  Identities=17%  Similarity=0.211  Sum_probs=208.7

Q ss_pred             CcceeeccccccceEEEEeCCCC-CEEEEeeCCCeEEEEECCCCceeEEee--CCcccEEEEEECCCCCeEEEEecCCCe
Q 021247           50 MQLERTNTGHCLGVVSVAAHPSG-IIAASASLDSFVRVFDVDTNASIATLE--ASPSEVWQMQFDPKGTTLAVAGGGSAS  126 (315)
Q Consensus        50 ~~~~~~~~~h~~~v~~~~~~~~g-~~l~s~~~d~~i~~w~~~~~~~~~~~~--~~~~~v~~~~~~~~~~~~~~~~~~d~~  126 (315)
                      .++.+.+.+|...|.+++|+|++ .++++++.|+.|++||+.+++....+.  .|...|.+++|+|++..++++++.|+.
T Consensus        63 ~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~  142 (383)
T 3ei3_B           63 YKLHRTASPFDRRVTSLEWHPTHPTTVAVGSKGGDIILWDYDVQNKTSFIQGMGPGDAITGMKFNQFNTNQLFVSSIRGA  142 (383)
T ss_dssp             CEEEEEECCCSSCEEEEEECSSCTTEEEEEEBTSCEEEEETTSTTCEEEECCCSTTCBEEEEEEETTEEEEEEEEETTTE
T ss_pred             cceEEeccCCCCCEEEEEECCCCCCEEEEEcCCCeEEEEeCCCcccceeeecCCcCCceeEEEeCCCCCCEEEEEeCCCE
Confidence            34455667899999999999999 999999999999999999888776665  588999999999955556788899999


Q ss_pred             EEEEecCCcceeeeecCCCCCCCCCCccCCCCcceEEEEECCCCCEEEEecCCCcEEEEEcccceeeeeecCCccceEEE
Q 021247          127 VKLWDTATWNLIATLSIPRPEGLKPTDKSSSKKFVLSVAWSPDGRRIACGSMDGTISVFDVTRAKFLHHLEGHFMPVRSL  206 (315)
Q Consensus       127 i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~s~dg~i~i~d~~~~~~~~~~~~~~~~v~~~  206 (315)
                      |++||++. +.+..+...          ..+...|.+++|+|++++|++++.|+.|++||+ +++.+..+..|...|.++
T Consensus       143 i~iwd~~~-~~~~~~~~~----------~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~-~~~~~~~~~~h~~~v~~~  210 (383)
T 3ei3_B          143 TTLRDFSG-SVIQVFAKT----------DSWDYWYCCVDVSVSRQMLATGDSTGRLLLLGL-DGHEIFKEKLHKAKVTHA  210 (383)
T ss_dssp             EEEEETTS-CEEEEEECC----------CCSSCCEEEEEEETTTTEEEEEETTSEEEEEET-TSCEEEEEECSSSCEEEE
T ss_pred             EEEEECCC-CceEEEecc----------CCCCCCeEEEEECCCCCEEEEECCCCCEEEEEC-CCCEEEEeccCCCcEEEE
Confidence            99999986 333333221          123456999999999999999999999999999 577788888999999999


Q ss_pred             EEcCCCCcEEEEEeCCCeEEEEeCCC----CeeEEEeecccccEEEEEEcC-CCCeEEEEeCCCcEEEEecCccceehcc
Q 021247          207 VYSPVDPRVLFSASDDTHVHMYDAEG----KSLVTAMSGHASWVLSVDASP-DGAAITTGSSDRTVKLWDLNMRAAMQSM  281 (315)
Q Consensus       207 ~~~~~~~~~l~s~~~d~~i~~wd~~~----~~~~~~~~~~~~~i~~~~~~~-~~~~l~s~~~d~~i~iwd~~~~~~~~~~  281 (315)
                      +|+|.+..++++++.|+.|++||++.    +..+..+ +|...|.+++|+| ++++|++++.|+.|++||+++++....+
T Consensus       211 ~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~-~~~~~v~~~~~s~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~  289 (383)
T 3ei3_B          211 EFNPRCDWLMATSSVDATVKLWDLRNIKDKNSYIAEM-PHEKPVNAAYFNPTDSTKLLTTDQRNEIRVYSSYDWSKPDQI  289 (383)
T ss_dssp             EECSSCTTEEEEEETTSEEEEEEGGGCCSTTCEEEEE-ECSSCEEEEEECTTTSCEEEEEESSSEEEEEETTBTTSCSEE
T ss_pred             EECCCCCCEEEEEeCCCEEEEEeCCCCCcccceEEEe-cCCCceEEEEEcCCCCCEEEEEcCCCcEEEEECCCCcccccc
Confidence            99996555999999999999999986    5555555 6999999999999 9999999999999999999988776665


Q ss_pred             cccc-----------------cceEEEEEeeCCCEEEEEeCCCcEEEeec
Q 021247          282 TNHT-----------------DQVWGVSFRPLGGRVVSVSDDKSISLYEY  314 (315)
Q Consensus       282 ~~~~-----------------~~v~~~~~s~~~~~l~s~~~d~~i~i~~~  314 (315)
                      ..|.                 ..+..++|+|++++  +++.|++|+|||+
T Consensus       290 ~~~~~~~~~~~~~~~~~~~p~~~~~~~~~s~dg~~--s~s~d~~i~iwd~  337 (383)
T 3ei3_B          290 IIHPHRQFQHLTPIKATWHPMYDLIVAGRYPDDQL--LLNDKRTIDIYDA  337 (383)
T ss_dssp             EECCBCCCTTSCCCCCEECSSSSEEEEECBCCTTT--CTTCCCCEEEEET
T ss_pred             ccccccccccccceEEeccCCCCceEEEecCCccc--ccCCCCeEEEEec
Confidence            5442                 34445777777766  8889999999996

>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a

Probab=100.00  E-value=6.9e-37  Score=257.22  Aligned_cols=250  Identities=26%  Similarity=0.355  Sum_probs=213.2

Q ss_pred             CCcceeeccccccceEEEEeCCC-CCEEEEeeCCCeEEEEECCCCc-----eeEEeeCCcccEEEEEECCCCCeEEEEec
Q 021247           49 DMQLERTNTGHCLGVVSVAAHPS-GIIAASASLDSFVRVFDVDTNA-----SIATLEASPSEVWQMQFDPKGTTLAVAGG  122 (315)
Q Consensus        49 ~~~~~~~~~~h~~~v~~~~~~~~-g~~l~s~~~d~~i~~w~~~~~~-----~~~~~~~~~~~v~~~~~~~~~~~~~~~~~  122 (315)
                      +.++..++.||.++|++++|+|+ +.+|+||+.|++|++||+.+.+     +...+..|...|.+++|+|+++++ ++++
T Consensus        27 ~~~l~~tL~GH~~~V~~v~~sp~~~~~l~S~s~D~~i~vWd~~~~~~~~~~~~~~l~~h~~~V~~~~~s~dg~~l-~s~~  105 (340)
T 4aow_A           27 QMTLRGTLKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVVISSDGQFA-LSGS  105 (340)
T ss_dssp             EEEEEEEECCCSSCEEEEEECTTCTTEEEEEETTSCEEEEEECCSSSCSEEEEEEECCCSSCEEEEEECTTSSEE-EEEE
T ss_pred             ceEEEEEECCccCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCCCcccceeeEEEeCCCCCEEEEEECCCCCEE-EEEc
Confidence            34455678999999999999997 6899999999999999997654     456778899999999999998865 6788


Q ss_pred             CCCeEEEEecCCcceeeeecCCCCCCCCCCccCCCCcceEEEEECCCCCEEEEecCCCcEEEEEccccee-eeeecCCcc
Q 021247          123 GSASVKLWDTATWNLIATLSIPRPEGLKPTDKSSSKKFVLSVAWSPDGRRIACGSMDGTISVFDVTRAKF-LHHLEGHFM  201 (315)
Q Consensus       123 ~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~s~dg~i~i~d~~~~~~-~~~~~~~~~  201 (315)
                      .|+.|++|+............             +...+..+.+++++++|++++.|+.+++||+..... .....+|..
T Consensus       106 ~d~~i~~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~l~s~s~d~~~~~~d~~~~~~~~~~~~~~~~  172 (340)
T 4aow_A          106 WDGTLRLWDLTTGTTTRRFVG-------------HTKDVLSVAFSSDNRQIVSGSRDKTIKLWNTLGVCKYTVQDESHSE  172 (340)
T ss_dssp             TTSEEEEEETTTTEEEEEEEC-------------CSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCEEEEECSSSCSS
T ss_pred             ccccceEEeecccceeeeecC-------------CCCceeEEEEeecCccceeecCCCeEEEEEeCCCceEEEEeccccC
Confidence            999999999987665544432             223477889999999999999999999999876544 345567899


Q ss_pred             ceEEEEEcCCC-CcEEEEEeCCCeEEEEeCCCCeeEEEeecccccEEEEEEcCCCCeEEEEeCCCcEEEEecCccceehc
Q 021247          202 PVRSLVYSPVD-PRVLFSASDDTHVHMYDAEGKSLVTAMSGHASWVLSVDASPDGAAITTGSSDRTVKLWDLNMRAAMQS  280 (315)
Q Consensus       202 ~v~~~~~~~~~-~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~  280 (315)
                      .+..+.|++.. ..++++++.|+.|++||.+.++.+..+.+|...|.+++|+|++++|++|+.|+.|++||++..+.+..
T Consensus       173 ~v~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~Dg~i~iwd~~~~~~~~~  252 (340)
T 4aow_A          173 WVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCKLKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGKHLYT  252 (340)
T ss_dssp             CEEEEEECSCSSSCEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTCEEEEEETTTTEEEEE
T ss_pred             cccceEEccCCCCcEEEEEcCCCEEEEEECCCCceeeEecCCCCcEEEEEECCCCCEEEEEeCCCeEEEEEeccCceeee
Confidence            99999998854 35778999999999999999999999999999999999999999999999999999999999888877


Q ss_pred             ccccccceEEEEEeeCCCEEEEEeCCCcEEEeec
Q 021247          281 MTNHTDQVWGVSFRPLGGRVVSVSDDKSISLYEY  314 (315)
Q Consensus       281 ~~~~~~~v~~~~~s~~~~~l~s~~~d~~i~i~~~  314 (315)
                      +..+ ..+.++.|+|++ ++++++.|+.|+|||+
T Consensus       253 ~~~~-~~v~~~~~~~~~-~~~~~~~d~~i~iwd~  284 (340)
T 4aow_A          253 LDGG-DIINALCFSPNR-YWLCAATGPSIKIWDL  284 (340)
T ss_dssp             EECS-SCEEEEEECSSS-SEEEEEETTEEEEEET
T ss_pred             ecCC-ceEEeeecCCCC-ceeeccCCCEEEEEEC
Confidence            7654 689999999986 4667778999999986

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=100.00  E-value=3.1e-37  Score=288.15  Aligned_cols=288  Identities=20%  Similarity=0.251  Sum_probs=243.0

Q ss_pred             hhhccccceEEEEEeecCCCCCcEEEEeeCCCcEEEEcCCCCcceeeccccccceEEEEeCCCCCEEEEeeCCCeEEEEE
Q 021247            9 VENAHEESVWAVTWVPATETRPALLLTGSLDETVKLWRPDDMQLERTNTGHCLGVVSVAAHPSGIIAASASLDSFVRVFD   88 (315)
Q Consensus         9 ~~~~h~~~v~~v~~~~~~~~~~~~l~sgs~d~~v~~w~~~~~~~~~~~~~h~~~v~~~~~~~~g~~l~s~~~d~~i~~w~   88 (315)
                      ...+|..+|.+++|+|.++    +|++|+.||.|++|+..+++....+.+|...|.+++|+|++.++++++.|+.|++||
T Consensus        50 ~~~~~~~~v~~~~~s~~~~----~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~  125 (814)
T 3mkq_A           50 SIQVTETPVRAGKFIARKN----WIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWN  125 (814)
T ss_dssp             EEECCSSCEEEEEEEGGGT----EEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSSSEEEEEETTSEEEEEE
T ss_pred             EEecCCCcEEEEEEeCCCC----EEEEEeCCCeEEEEECCCCcEEEEEecCCCCEEEEEEeCCCCEEEEEcCCCEEEEEE
Confidence            3457999999999999875    799999999999999999888888889999999999999999999999999999999


Q ss_pred             CCCC-ceeEEeeCCcccEEEEEECCCCCeEEEEecCCCeEEEEecCCcceeeeecCCCCCCCCCCccCCCCcceEEEEEC
Q 021247           89 VDTN-ASIATLEASPSEVWQMQFDPKGTTLAVAGGGSASVKLWDTATWNLIATLSIPRPEGLKPTDKSSSKKFVLSVAWS  167 (315)
Q Consensus        89 ~~~~-~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~  167 (315)
                      +.++ .....+..|...|.+++|+|.+...+++++.|++|++||+++.+....+...            +...+.+++|+
T Consensus       126 ~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~------------~~~~v~~~~~~  193 (814)
T 3mkq_A          126 WENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTG------------QERGVNYVDYY  193 (814)
T ss_dssp             GGGTSEEEEEEECCSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCSSCSEEEECC------------CTTCCCEEEEC
T ss_pred             CCCCceEEEEEcCCCCcEEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcceeEEecC------------CCCCEEEEEEE
Confidence            9987 5667788899999999999944446678889999999999876655444321            22348899999


Q ss_pred             C--CCCEEEEecCCCcEEEEEcccceeeeeecCCccceEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCeeEEEeeccccc
Q 021247          168 P--DGRRIACGSMDGTISVFDVTRAKFLHHLEGHFMPVRSLVYSPVDPRVLFSASDDTHVHMYDAEGKSLVTAMSGHASW  245 (315)
Q Consensus       168 ~--~~~~l~~~s~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~  245 (315)
                      |  ++.+|++++.||.|++||+.+++.+..+.+|...|.++.|+| ++.++++++.|+.|++||..+++.+..+..|...
T Consensus       194 ~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~~  272 (814)
T 3mkq_A          194 PLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHP-TLPIIISGSEDGTLKIWNSSTYKVEKTLNVGLER  272 (814)
T ss_dssp             CSTTCCEEEEECTTSEEEEEETTTTEEEEEEECCSSCEEEEEECS-SSSEEEEEETTSCEEEEETTTCSEEEEECCSSSS
T ss_pred             ECCCCCEEEEEeCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcC-CCCEEEEEeCCCeEEEEECCCCcEEEEeecCCCc
Confidence            9  999999999999999999999999999999999999999999 6679999999999999999999999999999999


Q ss_pred             EEEEEEcCCCCe-EEEEeCCCcEEEEecCccceehc-------------------------------------------c
Q 021247          246 VLSVDASPDGAA-ITTGSSDRTVKLWDLNMRAAMQS-------------------------------------------M  281 (315)
Q Consensus       246 i~~~~~~~~~~~-l~s~~~d~~i~iwd~~~~~~~~~-------------------------------------------~  281 (315)
                      +.+++|+|++.. +++++.++.+.+|++........                                           .
T Consensus       273 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  352 (814)
T 3mkq_A          273 SWCIATHPTGRKNYIASGFDNGFTVLSLGNDEPTLSLDPVGKLVWSGGKNAAASDIFTAVIRGNEEVEQDEPLSLQTKEL  352 (814)
T ss_dssp             EEEEEECTTCGGGEEEEEETTEEEEEECSCCSCCEEECSSSEEEEECCTTSCTTCEEEEECCSCCCCCSSSCBCCCCEEE
T ss_pred             EEEEEEccCCCceEEEEEeCCCEEEEEcCCCCceeEECCCCCEEEECcccccceeeeeeecccccccccCccceeeeecC
Confidence            999999999863 34455577788888754221110                                           1


Q ss_pred             cccccceEEEEEeeCCCEEEEEeCCCcEEEeec
Q 021247          282 TNHTDQVWGVSFRPLGGRVVSVSDDKSISLYEY  314 (315)
Q Consensus       282 ~~~~~~v~~~~~s~~~~~l~s~~~d~~i~i~~~  314 (315)
                      ..+...+.+++|+|+|++|++++ |+.+.||++
T Consensus       353 ~~~~~~~~~~~~spdg~~la~~~-~~~~~i~~~  384 (814)
T 3mkq_A          353 GSVDVFPQSLAHSPNGRFVTVVG-DGEYVIYTA  384 (814)
T ss_dssp             CCCSSCCSEEEECTTSSEEEEEE-TTEEEEEET
T ss_pred             CCCccCCceeEECCCCCEEEEec-CCEEEEEEC
Confidence            22334578899999999888888 899999985

>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}

Probab=100.00  E-value=7.6e-39  Score=273.32  Aligned_cols=241  Identities=17%  Similarity=0.179  Sum_probs=198.3

Q ss_pred             cccceEEEEeCCCCCEEEEeeCCCeEEEEECCCC--ceeEEeeCCcccEEEEEECCCCCeEEEEecCCCeEEEEecCCcc
Q 021247           59 HCLGVVSVAAHPSGIIAASASLDSFVRVFDVDTN--ASIATLEASPSEVWQMQFDPKGTTLAVAGGGSASVKLWDTATWN  136 (315)
Q Consensus        59 h~~~v~~~~~~~~g~~l~s~~~d~~i~~w~~~~~--~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~~d~~~~~  136 (315)
                      +..+|.+++|+|+|.+|++++.|+.|++||+.++  +.+..+..|...|.+++|+|+++.+ ++++.|++|++||+.+.+
T Consensus        10 ~~~~v~~~~~s~~g~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l-~s~s~d~~v~vwd~~~~~   88 (377)
T 3dwl_C           10 LPKPSYEHAFNSQRTEFVTTTATNQVELYEQDGNGWKHARTFSDHDKIVTCVDWAPKSNRI-VTCSQDRNAYVYEKRPDG   88 (377)
T ss_dssp             CSSCCSCCEECSSSSEEECCCSSSCBCEEEEETTEEEECCCBCCCSSCEEEEEECTTTCCE-EEEETTSSEEEC------
T ss_pred             CCCcEEEEEECCCCCEEEEecCCCEEEEEEccCCceEEEEEEecCCceEEEEEEeCCCCEE-EEEeCCCeEEEEEcCCCC
Confidence            5568999999999999999999999999999988  6777888899999999999998755 678899999999998765


Q ss_pred             -eeeeecCCCCCCCCCCccCCCCcceEEEEECCCCCEEEEecCCCcEEEEEcccce---eeeeecC-CccceEEEEEcCC
Q 021247          137 -LIATLSIPRPEGLKPTDKSSSKKFVLSVAWSPDGRRIACGSMDGTISVFDVTRAK---FLHHLEG-HFMPVRSLVYSPV  211 (315)
Q Consensus       137 -~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~s~dg~i~i~d~~~~~---~~~~~~~-~~~~v~~~~~~~~  211 (315)
                       .....           ....|...|.+++|+|++++|++++.|+.|++||+++++   ....+.. |...|.+++|+| 
T Consensus        89 ~~~~~~-----------~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~~v~~~~~~~-  156 (377)
T 3dwl_C           89 TWKQTL-----------VLLRLNRAATFVRWSPNEDKFAVGSGARVISVCYFEQENDWWVSKHLKRPLRSTILSLDWHP-  156 (377)
T ss_dssp             CCCCEE-----------ECCCCSSCEEEEECCTTSSCCEEEESSSCEEECCC-----CCCCEEECSSCCSCEEEEEECT-
T ss_pred             ceeeee-----------EecccCCceEEEEECCCCCEEEEEecCCeEEEEEECCcccceeeeEeecccCCCeEEEEEcC-
Confidence             11111           112355669999999999999999999999999998876   3667777 999999999999 


Q ss_pred             CCcEEEEEeCCCeEEEEeCC------------------CCeeEEEeecccccEEEEEEcCCCCeEEEEeCCCcEEEEecC
Q 021247          212 DPRVLFSASDDTHVHMYDAE------------------GKSLVTAMSGHASWVLSVDASPDGAAITTGSSDRTVKLWDLN  273 (315)
Q Consensus       212 ~~~~l~s~~~d~~i~~wd~~------------------~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~d~~i~iwd~~  273 (315)
                      ++++|++++.|+.|++||++                  .++++..+ +|...|.+++|+|++++|++++.|+.|++||++
T Consensus       157 ~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~sp~~~~l~~~~~d~~i~iwd~~  235 (377)
T 3dwl_C          157 NNVLLAAGCADRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEY-PSGGWVHAVGFSPSGNALAYAGHDSSVTIAYPS  235 (377)
T ss_dssp             TSSEEEEEESSSCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECC-CCSSSEEEEEECTTSSCEEEEETTTEEC-CEEC
T ss_pred             CCCEEEEEeCCCEEEEEEEEecccCCCccccccccccchhhhhhcc-cCCceEEEEEECCCCCEEEEEeCCCcEEEEECC
Confidence            67899999999999999985                  23455555 899999999999999999999999999999999


Q ss_pred             ccce----ehcccccccceEEEEEeeCCCEEEEEeCCCcEEEeec
Q 021247          274 MRAA----MQSMTNHTDQVWGVSFRPLGGRVVSVSDDKSISLYEY  314 (315)
Q Consensus       274 ~~~~----~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~i~i~~~  314 (315)
                      .++.    +..+.+|...|++++|+|++++|+++++|+.+ +|+.
T Consensus       236 ~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~-~~~~  279 (377)
T 3dwl_C          236 APEQPPRALITVKLSQLPLRSLLWANESAIVAAGYNYSPI-LLQG  279 (377)
T ss_dssp             STTSCEEECCCEECSSSCEEEEEEEETTEEEEEESSSSEE-EECC
T ss_pred             CCCCcceeeEeecCCCCceEEEEEcCCCCEEEEEcCCcEE-EEEe
Confidence            8877    78889999999999999999988888776666 6653

>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}

Probab=100.00  E-value=1.3e-36  Score=264.18  Aligned_cols=280  Identities=17%  Similarity=0.156  Sum_probs=237.6

Q ss_pred             cceEEEEEeecCCCCCcEEEEeeCCCcEEEEcCCCCccee-----eccccccceEEEEeCCCCCEEEEeeCCCeEEEEEC
Q 021247           15 ESVWAVTWVPATETRPALLLTGSLDETVKLWRPDDMQLER-----TNTGHCLGVVSVAAHPSGIIAASASLDSFVRVFDV   89 (315)
Q Consensus        15 ~~v~~v~~~~~~~~~~~~l~sgs~d~~v~~w~~~~~~~~~-----~~~~h~~~v~~~~~~~~g~~l~s~~~d~~i~~w~~   89 (315)
                      ..+.+++|+|..    .++++++.|+.|++||..+.+..+     ...+|...+.++.+++++.++++++.|+.|++||+
T Consensus       123 ~~~~~~~~s~~~----~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~v~~~d~  198 (433)
T 3bws_A          123 FQPKSVRFIDNT----RLAIPLLEDEGMDVLDINSGQTVRLSPPEKYKKKLGFVETISIPEHNELWVSQMQANAVHVFDL  198 (433)
T ss_dssp             SCBCCCEESSSS----EEEEEBTTSSSEEEEETTTCCEEEECCCHHHHTTCCEEEEEEEGGGTEEEEEEGGGTEEEEEET
T ss_pred             CCceEEEEeCCC----eEEEEeCCCCeEEEEECCCCeEeeecCcccccccCCceeEEEEcCCCEEEEEECCCCEEEEEEC
Confidence            456688998832    378888889999999998887766     34578889999999999999999999999999999


Q ss_pred             CCCceeEEeeCCcccEEEEEECCCCCeEEEEecCCCeEEEEecCCcceeeeecCCCCCCCCCCccCCCCcceEEEEECCC
Q 021247           90 DTNASIATLEASPSEVWQMQFDPKGTTLAVAGGGSASVKLWDTATWNLIATLSIPRPEGLKPTDKSSSKKFVLSVAWSPD  169 (315)
Q Consensus        90 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~  169 (315)
                      .+++.+..+..+...+..++|+|+++.+++++..++.|++||+++++.+..+..              ...+.+++|+|+
T Consensus       199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~~~~~~~~--------------~~~~~~~~~~~~  264 (433)
T 3bws_A          199 KTLAYKATVDLTGKWSKILLYDPIRDLVYCSNWISEDISVIDRKTKLEIRKTDK--------------IGLPRGLLLSKD  264 (433)
T ss_dssp             TTCCEEEEEECSSSSEEEEEEETTTTEEEEEETTTTEEEEEETTTTEEEEECCC--------------CSEEEEEEECTT
T ss_pred             CCceEEEEEcCCCCCeeEEEEcCCCCEEEEEecCCCcEEEEECCCCcEEEEecC--------------CCCceEEEEcCC
Confidence            999988888888889999999999998888888899999999998877655432              123789999999


Q ss_pred             CCEEEEec--------CCCcEEEEEcccceeeeeecCCccceEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCeeEEEeec
Q 021247          170 GRRIACGS--------MDGTISVFDVTRAKFLHHLEGHFMPVRSLVYSPVDPRVLFSASDDTHVHMYDAEGKSLVTAMSG  241 (315)
Q Consensus       170 ~~~l~~~s--------~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~  241 (315)
                      ++++++++        .|+.|++||+.+++....+ .|...+..++|+|++..++++++.|+.|++||.++++.+..+. 
T Consensus       265 g~~l~~~~~~~~~~~~~dg~i~~~d~~~~~~~~~~-~~~~~~~~~~~~~~g~~l~~~~~~~~~v~v~d~~~~~~~~~~~-  342 (433)
T 3bws_A          265 GKELYIAQFSASNQESGGGRLGIYSMDKEKLIDTI-GPPGNKRHIVSGNTENKIYVSDMCCSKIEVYDLKEKKVQKSIP-  342 (433)
T ss_dssp             SSEEEEEEEESCTTCSCCEEEEEEETTTTEEEEEE-EEEECEEEEEECSSTTEEEEEETTTTEEEEEETTTTEEEEEEE-
T ss_pred             CCEEEEEECCCCccccCCCeEEEEECCCCcEEeec-cCCCCcceEEECCCCCEEEEEecCCCEEEEEECCCCcEEEEec-
Confidence            99998887        5889999999988776655 3455788999999666677888999999999999888777665 


Q ss_pred             ccccEEEEEEcCCCCeEEEEeC---------------CCcEEEEecCccceehcccccccceEEEEEeeCCCEEEEEeC-
Q 021247          242 HASWVLSVDASPDGAAITTGSS---------------DRTVKLWDLNMRAAMQSMTNHTDQVWGVSFRPLGGRVVSVSD-  305 (315)
Q Consensus       242 ~~~~i~~~~~~~~~~~l~s~~~---------------d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~-  305 (315)
                      +...+.+++|+|+++++++++.               ||.|++||+.+++.+..+.. ...+.+++|+|+|++|++++. 
T Consensus       343 ~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~g~~dg~v~~~d~~~~~~~~~~~~-~~~~~~~~~s~dg~~l~~~~~~  421 (433)
T 3bws_A          343 VFDKPNTIALSPDGKYLYVSCRGPNHPTEGYLKKGLVLGKVYVIDTTTDTVKEFWEA-GNQPTGLDVSPDNRYLVISDFL  421 (433)
T ss_dssp             CSSSEEEEEECTTSSEEEEEECCCCCTTTCTTSCCSSCCEEEEEETTTTEEEEEEEC-SSSEEEEEECTTSCEEEEEETT
T ss_pred             CCCCCCeEEEcCCCCEEEEEecCCCccccccccccccceEEEEEECCCCcEEEEecC-CCCCceEEEcCCCCEEEEEECC
Confidence            6677999999999998888877               57999999999888777765 457899999999999988775 


Q ss_pred             CCcEEEeecC
Q 021247          306 DKSISLYEYS  315 (315)
Q Consensus       306 d~~i~i~~~~  315 (315)
                      |++|++|+++
T Consensus       422 d~~i~v~~~~  431 (433)
T 3bws_A          422 DHQIRVYRRD  431 (433)
T ss_dssp             TTEEEEEEET
T ss_pred             CCeEEEEEec
Confidence            9999999974

>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A

Probab=100.00  E-value=8.2e-37  Score=258.81  Aligned_cols=275  Identities=12%  Similarity=0.143  Sum_probs=211.2

Q ss_pred             hhhccccceEEEEEeecCCCCCcEEEEeeCCCcEEEEcCCCCcceeeccccccceEEEEeCCCCCEE-EEeeCCCeEEEE
Q 021247            9 VENAHEESVWAVTWVPATETRPALLLTGSLDETVKLWRPDDMQLERTNTGHCLGVVSVAAHPSGIIA-ASASLDSFVRVF   87 (315)
Q Consensus         9 ~~~~h~~~v~~v~~~~~~~~~~~~l~sgs~d~~v~~w~~~~~~~~~~~~~h~~~v~~~~~~~~g~~l-~s~~~d~~i~~w   87 (315)
                      ...+|.+.|++++|+|++.    +|++|+.|+ +++|+.++.+.....  +..++..+.+.+++..+ ++++.|++|++|
T Consensus        14 ~~~~h~~~V~~v~fs~dg~----~la~g~~~~-~~iw~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~d~~v~iW   86 (355)
T 3vu4_A           14 PENHVSNPVTDYEFNQDQS----CLILSTLKS-FEIYNVHPVAHIMSQ--EMRHLSKVRMLHRTNYVAFVTGVKEVVHIW   86 (355)
T ss_dssp             -----CCCCCEEEECTTSS----EEEEECSSE-EEEEEETTEEEEEEE--ECSCCCEEEECTTSSEEEEECSSTTEEEEE
T ss_pred             ccccCCCceEEEEECCCCC----EEEEEcCCE-EEEEecCCcceeeee--ecCCeEEEEEcCCCCEEEEEECCccEEEEE
Confidence            3478999999999999875    688777664 789998765544332  22357778888888776 578888999999


Q ss_pred             ECCCCceeEEeeCCcccEEEEEECCCCCeEEEEecCCCeEEEEecCCc-ceeeeecCCCCCCCCCCccCCCCcceEEEEE
Q 021247           88 DVDTNASIATLEASPSEVWQMQFDPKGTTLAVAGGGSASVKLWDTATW-NLIATLSIPRPEGLKPTDKSSSKKFVLSVAW  166 (315)
Q Consensus        88 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~~d~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~  166 (315)
                      |..+++.+..+. +..+|.+++++++.  ++++  .++.|++||+.+. +.+..+..                ....+++
T Consensus        87 d~~~~~~~~~~~-~~~~v~~v~~~~~~--~~~~--~~~~i~i~d~~~~~~~~~~~~~----------------~~~~~~~  145 (355)
T 3vu4_A           87 DDVKKQDVSRIK-VDAPVKDLFLSREF--IVVS--YGDVISVFKFGNPWKRITDDIR----------------FGGVCEF  145 (355)
T ss_dssp             ETTTTEEEEEEE-CSSCEEEEEECSSE--EEEE--ETTEEEEEESSTTCCBSSCCEE----------------EEEEEEE
T ss_pred             ECCCCcEEEEEE-CCCceEEEEEcCCE--EEEE--EcCEEEEEECCCCceeeEEecc----------------CCceEEE
Confidence            999999888887 55689999998763  3332  4789999999875 43332211                2345566


Q ss_pred             CCCCCEEEE--ecCCCcEEEEEcccce----------------eeeeecCCccceEEEEEcCCCCcEEEEEeCCCe-EEE
Q 021247          167 SPDGRRIAC--GSMDGTISVFDVTRAK----------------FLHHLEGHFMPVRSLVYSPVDPRVLFSASDDTH-VHM  227 (315)
Q Consensus       167 ~~~~~~l~~--~s~dg~i~i~d~~~~~----------------~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~-i~~  227 (315)
                      ++  .+++.  |+.||.|++||+.+++                .+..+.+|..+|.+++|+| ++++|++++.|++ |++
T Consensus       146 s~--~~la~~sg~~~g~v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~~~h~~~v~~~~~s~-~g~~l~s~s~d~~~v~i  222 (355)
T 3vu4_A          146 SN--GLLVYSNEFNLGQIHITKLQSSGSATTQDQGVQQKAILGKGVLIKAHTNPIKMVRLNR-KSDMVATCSQDGTIIRV  222 (355)
T ss_dssp             ET--TEEEEEESSCTTCEEEEECCC------------------CCEEECCCSSCEEEEEECT-TSSEEEEEETTCSEEEE
T ss_pred             Ec--cEEEEeCCCcCcEEEEEECCCCCccccccccccccccCcccEEEEccCCceEEEEECC-CCCEEEEEeCCCCEEEE
Confidence            66  55555  6899999999998765                2677889999999999999 7789999999998 999


Q ss_pred             EeCCCCeeEEEee-c-ccccEEEEEEcCCCCeEEEEeCCCcEEEEecCccceeh--ccc---------------------
Q 021247          228 YDAEGKSLVTAMS-G-HASWVLSVDASPDGAAITTGSSDRTVKLWDLNMRAAMQ--SMT---------------------  282 (315)
Q Consensus       228 wd~~~~~~~~~~~-~-~~~~i~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~--~~~---------------------  282 (315)
                      ||.++++.+..+. + |...|.+++|+|++++|++++.|++|++||++.....+  .+.                     
T Consensus       223 wd~~~~~~~~~~~~g~h~~~v~~~~~s~~~~~l~s~s~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  302 (355)
T 3vu4_A          223 FKTEDGVLVREFRRGLDRADVVDMKWSTDGSKLAVVSDKWTLHVFEIFNDQDNKRHALKGWINMKYFQSEWSLCNFKLSV  302 (355)
T ss_dssp             EETTTCCEEEEEECTTCCSCEEEEEECTTSCEEEEEETTCEEEEEESSCCSCCCSEETTTTEECCCCCCSSCSEEEECCC
T ss_pred             EECCCCcEEEEEEcCCCCCcEEEEEECCCCCEEEEEECCCEEEEEEccCCCCcccccccceeeccccccccceeEEEecc
Confidence            9999999988887 5 99999999999999999999999999999997543111  110                     


Q ss_pred             ccccceEEEEEeeCCCEEEEEeCCCcEEEeec
Q 021247          283 NHTDQVWGVSFRPLGGRVVSVSDDKSISLYEY  314 (315)
Q Consensus       283 ~~~~~v~~~~~s~~~~~l~s~~~d~~i~i~~~  314 (315)
                      .+......++|+|++++|++++.||.+++|++
T Consensus       303 ~~~~~~~~~a~~~d~~~l~~~~~dg~~~~~~~  334 (355)
T 3vu4_A          303 DKHVRGCKIAWISESSLVVVWPHTRMIETFKV  334 (355)
T ss_dssp             CTTCCCCEEEESSSSEEEEEETTTTEEEEEEE
T ss_pred             CCCCCceEEEEeCCCCEEEEEeCCCeEEEEEE
Confidence            11122356899999999999999999999986

>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A

Probab=100.00  E-value=1.6e-37  Score=263.48  Aligned_cols=258  Identities=18%  Similarity=0.302  Sum_probs=214.1

Q ss_pred             cccceEEEEEeecCCCCCcEEEEeeCCCcEEEEcCCCCcceeeccccccceEEEEeCC-CCCEEEEeeCCCeEEEEECCC
Q 021247           13 HEESVWAVTWVPATETRPALLLTGSLDETVKLWRPDDMQLERTNTGHCLGVVSVAAHP-SGIIAASASLDSFVRVFDVDT   91 (315)
Q Consensus        13 h~~~v~~v~~~~~~~~~~~~l~sgs~d~~v~~w~~~~~~~~~~~~~h~~~v~~~~~~~-~g~~l~s~~~d~~i~~w~~~~   91 (315)
                      |...|++++|+|.......+|++|+.||.|++|+..+.+....+.+|..+|.+++|+| ++.++++++.|+.|++||+.+
T Consensus        68 ~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~s~~~dg~i~iwd~~~  147 (366)
T 3k26_A           68 ADENFYTCAWTYDSNTSHPLLAVAGSRGIIRIINPITMQCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQT  147 (366)
T ss_dssp             TTCCEEEEEEEECTTTCCEEEEEEETTCEEEEECTTTCCEEEEEESCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTT
T ss_pred             CCCcEEEEEeccCCCCCCCEEEEecCCCEEEEEEchhceEeeeecCCCCcEEEEEECCCCCCEEEEEeCCCeEEEEEeec
Confidence            6788999999998653345899999999999999998888888889999999999999 899999999999999999999


Q ss_pred             CceeEEe---eCCcccEEEEEECCCCCeEEEEecCCCeEEEEecCCcceeeeecCC----CC-CC----------CCCCc
Q 021247           92 NASIATL---EASPSEVWQMQFDPKGTTLAVAGGGSASVKLWDTATWNLIATLSIP----RP-EG----------LKPTD  153 (315)
Q Consensus        92 ~~~~~~~---~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~----~~-~~----------~~~~~  153 (315)
                      ++.+..+   ..+...|.+++|+|+++.+ ++++.|+.|++||+++.+....+...    .. ..          .....
T Consensus       148 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l-~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  226 (366)
T 3k26_A          148 DTLVAIFGGVEGHRDEVLSADYDLLGEKI-MSCGMDHSLKLWRINSKRMMNAIKESYDYNPNKTNRPFISQKIHFPDFST  226 (366)
T ss_dssp             TEEEEEECSTTSCSSCEEEEEECTTSSEE-EEEETTSCEEEEESCSHHHHHHHHHHHTCCGGGCSSCCCCEEECCCSEEE
T ss_pred             CeEEEEecccccccCceeEEEECCCCCEE-EEecCCCCEEEEECCCCccccccceeEEecCCCCcccccceeeccCcccc
Confidence            9888887   6788999999999998865 67788999999999876654332210    00 00          00001


Q ss_pred             cCCCCcceEEEEECCCCCEEEEecCCCcEEEEEcccce--------------eeeeecCCccceEEEEEcCCC-CcEEEE
Q 021247          154 KSSSKKFVLSVAWSPDGRRIACGSMDGTISVFDVTRAK--------------FLHHLEGHFMPVRSLVYSPVD-PRVLFS  218 (315)
Q Consensus       154 ~~~~~~~i~~~~~~~~~~~l~~~s~dg~i~i~d~~~~~--------------~~~~~~~~~~~v~~~~~~~~~-~~~l~s  218 (315)
                      ...+...|.+++|+  +++|++++.|+.|++||+.+.+              .+..+..|...|.+++|+|+. +++|++
T Consensus       227 ~~~~~~~v~~~~~~--~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~  304 (366)
T 3k26_A          227 RDIHRNYVDCVRWL--GDLILSKSCENAIVCWKPGKMEDDIDKIKPSESNVTILGRFDYSQCDIWYMRFSMDFWQKMLAL  304 (366)
T ss_dssp             CSSCSSCCCEEEEE--TTEEEEECSSSEEEEEEESSTTCCGGGCCTTCCCEEEEEEEECSSCCSSCCCCEECTTSSEEEE
T ss_pred             ccCCcceEEEEEEc--CCEEEEEecCCEEEEEeCCCccccccccccCCcchheeccccccCCcEEEEEEcCCCCCcEEEE
Confidence            12366779999998  7799999999999999997663              366778898999999999841 789999


Q ss_pred             EeCCCeEEEEeCCCCe----eEEEeecc--cccEEEEEEcCCCCeEEEEeCCCcEEEEecC
Q 021247          219 ASDDTHVHMYDAEGKS----LVTAMSGH--ASWVLSVDASPDGAAITTGSSDRTVKLWDLN  273 (315)
Q Consensus       219 ~~~d~~i~~wd~~~~~----~~~~~~~~--~~~i~~~~~~~~~~~l~s~~~d~~i~iwd~~  273 (315)
                      ++.|+.|++||++.++    ....+..|  ...|.+++|+|++++|++++.||.|++||+.
T Consensus       305 ~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~  365 (366)
T 3k26_A          305 GNQVGKLYVWDLEVEDPHKAKCTTLTHHKCGAAIRQTSFSRDSSILIAVCDDASIWRWDRL  365 (366)
T ss_dssp             ECTTSCEEEEECCSSSGGGCEEEEECCTTCCSCEEEEEECTTSSEEEEEETTSEEEEEEC-
T ss_pred             EecCCcEEEEECCCCCCccccceEEcccccCCceEEEEeCCCCCeEEEEeCCCEEEEEEec
Confidence            9999999999998764    44466777  7899999999999999999999999999985

>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X

Probab=100.00  E-value=2.7e-37  Score=265.35  Aligned_cols=253  Identities=15%  Similarity=0.160  Sum_probs=216.3

Q ss_pred             hhhccccceEEEEEeec----CCCCCcEEEEeeCCCcEEEEcCCCCcc-----eeecccc-----ccceEEEEeC----C
Q 021247            9 VENAHEESVWAVTWVPA----TETRPALLLTGSLDETVKLWRPDDMQL-----ERTNTGH-----CLGVVSVAAH----P   70 (315)
Q Consensus         9 ~~~~h~~~v~~v~~~~~----~~~~~~~l~sgs~d~~v~~w~~~~~~~-----~~~~~~h-----~~~v~~~~~~----~   70 (315)
                      ...+|...|++++|+|.    +. ...+|++|+.||.|++|+..+.+.     ...+.+|     ...|.++.|+    |
T Consensus        57 ~~~~h~~~v~~~~~~~~~~~~g~-~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~  135 (397)
T 1sq9_A           57 SHFVHKSGLHHVDVLQAIERDAF-ELCLVATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDR  135 (397)
T ss_dssp             EEECCTTCEEEEEEEEEEETTTE-EEEEEEEEETTSCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC--
T ss_pred             EEecCCCcEEEEEEecccccCCc-cccEEEEEcCCCCEEEEEccCCcccccccceeecccccccCCCcEEEEEEeeccCC
Confidence            34689999999999997    40 002799999999999999887775     6777778     5899999999    9


Q ss_pred             CCCE-EEEeeCCCeEEEEECCC------CceeE-----Ee-------eCCcccEEEEEECCCCCeEEEEecCCCeEEEEe
Q 021247           71 SGII-AASASLDSFVRVFDVDT------NASIA-----TL-------EASPSEVWQMQFDPKGTTLAVAGGGSASVKLWD  131 (315)
Q Consensus        71 ~g~~-l~s~~~d~~i~~w~~~~------~~~~~-----~~-------~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~~d  131 (315)
                      ++.+ +++++.|+.|++||+.+      +..+.     .+       ..+...+.+++|+|++  ++++++.|+.|++||
T Consensus       136 ~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~--~l~~~~~dg~i~i~d  213 (397)
T 1sq9_A          136 LLSHRLVATDVKGTTYIWKFHPFADESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISERG--LIATGFNNGTVQISE  213 (397)
T ss_dssp             --CEEEEEEETTSCEEEEEEESSSSHHHHTTTCCCCEEEEEEEECCSSSSCCCCCEEEECTTS--EEEEECTTSEEEEEE
T ss_pred             CCceEEEEEeCCCcEEEEeCCccccccccceeeccCcceeeeeeccccCCCCCceEEEECCCc--eEEEEeCCCcEEEEE
Confidence            9999 99999999999999988      55554     55       3477889999999998  567888999999999


Q ss_pred             cCCcceeeeecCCCCCCCCCCccCCC---CcceEEEEECCCCCEEEEecCC---CcEEEEEcccceeeeeecC-------
Q 021247          132 TATWNLIATLSIPRPEGLKPTDKSSS---KKFVLSVAWSPDGRRIACGSMD---GTISVFDVTRAKFLHHLEG-------  198 (315)
Q Consensus       132 ~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~i~~~~~~~~~~~l~~~s~d---g~i~i~d~~~~~~~~~~~~-------  198 (315)
                      +++.+.+..+...          ..|   ...|.+++|+|++++|++++.|   +.|++||+++++.+..+..       
T Consensus       214 ~~~~~~~~~~~~~----------~~h~~~~~~i~~i~~~~~~~~l~~~~~d~~~g~i~i~d~~~~~~~~~~~~~~~~~~~  283 (397)
T 1sq9_A          214 LSTLRPLYNFESQ----------HSMINNSNSIRSVKFSPQGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQA  283 (397)
T ss_dssp             TTTTEEEEEEECC----------C---CCCCCEEEEEECSSTTEEEEEEEETTEEEEEEEETTTCCEEEEECBC------
T ss_pred             CCCCceeEEEecc----------ccccccCCccceEEECCCCCEEEEEecCCCCceEEEEECCCCcccceeccCcccccc
Confidence            9988877766430          012   4459999999999999999999   9999999999999988888       


Q ss_pred             ------CccceEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCeeEEEee------cc---------------cccEEEEEE
Q 021247          199 ------HFMPVRSLVYSPVDPRVLFSASDDTHVHMYDAEGKSLVTAMS------GH---------------ASWVLSVDA  251 (315)
Q Consensus       199 ------~~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~------~~---------------~~~i~~~~~  251 (315)
                            |...|.++.|+| ++++|++++.|+.|++||++.++.+..+.      +|               ...|.+++|
T Consensus       284 ~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~~~~~  362 (397)
T 1sq9_A          284 SLGEFAHSSWVMSLSFND-SGETLCSAGWDGKLRFWDVKTKERITTLNMHCDDIEIEEDILAVDEHGDSLAEPGVFDVKF  362 (397)
T ss_dssp             --CCBSBSSCEEEEEECS-SSSEEEEEETTSEEEEEETTTTEEEEEEECCGGGCSSGGGCCCBCTTSCBCSSCCEEEEEE
T ss_pred             cccccccCCcEEEEEECC-CCCEEEEEeCCCeEEEEEcCCCceeEEEecccCcccchhhhhccccccccccCCceeEEEe
Confidence                  999999999998 67799999999999999999999998888      78               899999999


Q ss_pred             cCCC----------CeEEEEeCCCcEEEEecCcc
Q 021247          252 SPDG----------AAITTGSSDRTVKLWDLNMR  275 (315)
Q Consensus       252 ~~~~----------~~l~s~~~d~~i~iwd~~~~  275 (315)
                      +|++          ++|++++.||.|++|+++++
T Consensus       363 ~~~g~~~~~~~~~~~~l~s~~~dg~i~iw~~~~g  396 (397)
T 1sq9_A          363 LKKGWRSGMGADLNESLCCVCLDRSIRWFREAGG  396 (397)
T ss_dssp             ECTTTSBSTTCTTSCEEEEEETTTEEEEEEEEC-
T ss_pred             ccccccccccccccceEEEecCCCcEEEEEcCCC
Confidence            9998          79999999999999999765

>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}

Probab=100.00  E-value=1.8e-36  Score=278.39  Aligned_cols=245  Identities=26%  Similarity=0.351  Sum_probs=210.7

Q ss_pred             eeccccccceEEEEeCCCC-CEEEEeeCCCeEEEEECCCC-----ceeEEeeCCcccEEEEEECCCCCeEEEEecCCCeE
Q 021247           54 RTNTGHCLGVVSVAAHPSG-IIAASASLDSFVRVFDVDTN-----ASIATLEASPSEVWQMQFDPKGTTLAVAGGGSASV  127 (315)
Q Consensus        54 ~~~~~h~~~v~~~~~~~~g-~~l~s~~~d~~i~~w~~~~~-----~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i  127 (315)
                      ..+.+|...|++++++|++ .+|++|+.|++|++|++.+.     .....+..|...|.+++|+|+++. +++|+.|++|
T Consensus       376 ~~l~~H~~~V~~v~~~~~~~~~l~s~s~D~~i~~W~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~g~~-l~sgs~Dg~v  454 (694)
T 3dm0_A          376 GTMRAHTDMVTAIATPIDNADIIVSASRDKSIILWKLTKDDKAYGVAQRRLTGHSHFVEDVVLSSDGQF-ALSGSWDGEL  454 (694)
T ss_dssp             EEEECCSSCEEEEECCTTCCSEEEEEETTSEEEEEECCCSTTCSCEEEEEEECCSSCEEEEEECTTSSE-EEEEETTSEE
T ss_pred             hhcccCCceeEEEEecCCCCCEEEEEeCCCcEEEEEccCCCcccccccceecCCCCcEEEEEECCCCCE-EEEEeCCCcE
Confidence            3467899999999999875 79999999999999999764     345678889999999999999885 4688999999


Q ss_pred             EEEecCCcceeeeecCCCCCCCCCCccCCCCcceEEEEECCCCCEEEEecCCCcEEEEEcccceeeee---ecCCccceE
Q 021247          128 KLWDTATWNLIATLSIPRPEGLKPTDKSSSKKFVLSVAWSPDGRRIACGSMDGTISVFDVTRAKFLHH---LEGHFMPVR  204 (315)
Q Consensus       128 ~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~s~dg~i~i~d~~~~~~~~~---~~~~~~~v~  204 (315)
                      ++||+.+++....+.             .|...|.+++|+|++++|++|+.|+.|++||+........   ..+|...|.
T Consensus       455 ~vwd~~~~~~~~~~~-------------~h~~~v~~~~~s~~~~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~h~~~v~  521 (694)
T 3dm0_A          455 RLWDLAAGVSTRRFV-------------GHTKDVLSVAFSLDNRQIVSASRDRTIKLWNTLGECKYTISEGGEGHRDWVS  521 (694)
T ss_dssp             EEEETTTTEEEEEEE-------------CCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCEEEEECSSTTSCSSCEE
T ss_pred             EEEECCCCcceeEEe-------------CCCCCEEEEEEeCCCCEEEEEeCCCEEEEEECCCCcceeeccCCCCCCCcEE
Confidence            999999887766553             3455699999999999999999999999999865543332   246888999


Q ss_pred             EEEEcCCC-CcEEEEEeCCCeEEEEeCCCCeeEEEeecccccEEEEEEcCCCCeEEEEeCCCcEEEEecCccceehcccc
Q 021247          205 SLVYSPVD-PRVLFSASDDTHVHMYDAEGKSLVTAMSGHASWVLSVDASPDGAAITTGSSDRTVKLWDLNMRAAMQSMTN  283 (315)
Q Consensus       205 ~~~~~~~~-~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~  283 (315)
                      ++.|+|.. ...+++++.|+.|++||++..++...+.+|.+.|.+++|+|++++|++|+.|++|++||+.+++.+..+..
T Consensus       522 ~~~~~~~~~~~~l~s~s~d~~v~vwd~~~~~~~~~~~~h~~~v~~v~~spdg~~l~sg~~Dg~i~iwd~~~~~~~~~~~~  601 (694)
T 3dm0_A          522 CVRFSPNTLQPTIVSASWDKTVKVWNLSNCKLRSTLAGHTGYVSTVAVSPDGSLCASGGKDGVVLLWDLAEGKKLYSLEA  601 (694)
T ss_dssp             EEEECSCSSSCEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSBCEEEETTTTEEEECCBC
T ss_pred             EEEEeCCCCcceEEEEeCCCeEEEEECCCCcEEEEEcCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCceEEEecC
Confidence            99999954 35899999999999999999999999999999999999999999999999999999999999888877654


Q ss_pred             cccceEEEEEeeCCCEEEEEeCCCcEEEeec
Q 021247          284 HTDQVWGVSFRPLGGRVVSVSDDKSISLYEY  314 (315)
Q Consensus       284 ~~~~v~~~~~s~~~~~l~s~~~d~~i~i~~~  314 (315)
                       ...+.+++|+|++.+|+++ .|+.|+|||+
T Consensus       602 -~~~v~~~~~sp~~~~l~~~-~~~~i~iwd~  630 (694)
T 3dm0_A          602 -NSVIHALCFSPNRYWLCAA-TEHGIKIWDL  630 (694)
T ss_dssp             -SSCEEEEEECSSSSEEEEE-ETTEEEEEET
T ss_pred             -CCcEEEEEEcCCCcEEEEE-cCCCEEEEEC
Confidence             4689999999998766665 4567999996

>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}

Probab=100.00  E-value=3.8e-37  Score=268.46  Aligned_cols=256  Identities=14%  Similarity=0.225  Sum_probs=204.7

Q ss_pred             ccccceEEEEeCCCCCEEEEeeCCCeEEEEECCCCc-----------eeEEeeCCc------------ccEEEEEECCCC
Q 021247           58 GHCLGVVSVAAHPSGIIAASASLDSFVRVFDVDTNA-----------SIATLEASP------------SEVWQMQFDPKG  114 (315)
Q Consensus        58 ~h~~~v~~~~~~~~g~~l~s~~~d~~i~~w~~~~~~-----------~~~~~~~~~------------~~v~~~~~~~~~  114 (315)
                      .|...|.+++|+|+|.+|++|+.||.|++|++.++.           ....+..|.            ..|.+++|+|++
T Consensus        26 ~~~~~V~~v~~s~~g~~la~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~l~~~~~~  105 (447)
T 3dw8_B           26 AEADIISTVEFNHSGELLATGDKGGRVVIFQQEQENKIQSHSRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLPQK  105 (447)
T ss_dssp             CGGGSEEEEEECSSSSEEEEEETTSEEEEEEECC-----CCCCCCEEEEEEEECCCCEEEGGGTEEECCCCCEEEECCCC
T ss_pred             cccCcEEEEEECCCCCEEEEEcCCCeEEEEEecCCCCCCcccccceeEecccccccccccccccccccCceEEEEEcCCC
Confidence            467899999999999999999999999999999876           466778887            789999999997


Q ss_pred             C-eEEEEecCCCeEEEEecCCcceeeee-cCCCCCC----------CCC----------------CccCCCCcceEEEEE
Q 021247          115 T-TLAVAGGGSASVKLWDTATWNLIATL-SIPRPEG----------LKP----------------TDKSSSKKFVLSVAW  166 (315)
Q Consensus       115 ~-~~~~~~~~d~~i~~~d~~~~~~~~~~-~~~~~~~----------~~~----------------~~~~~~~~~i~~~~~  166 (315)
                      + ..+++++.|++|++||+...+..... ......+          ...                .....|...|.+++|
T Consensus       106 ~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~  185 (447)
T 3dw8_B          106 NAAQFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFANAHTYHINSISI  185 (447)
T ss_dssp             SSSEEEEEECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEECSCCSSCCCEEEE
T ss_pred             CcceEEEeCCCCeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceEEeccCCCcceEEEEE
Confidence            3 34567789999999999765432110 0000000          000                002356778999999


Q ss_pred             CCCCCEEEEecCCCcEEEEEccc-ceeee-------eecCCccceEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCee---
Q 021247          167 SPDGRRIACGSMDGTISVFDVTR-AKFLH-------HLEGHFMPVRSLVYSPVDPRVLFSASDDTHVHMYDAEGKSL---  235 (315)
Q Consensus       167 ~~~~~~l~~~s~dg~i~i~d~~~-~~~~~-------~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~---  235 (315)
                      +|++++|++| .|+.|++||+++ ++...       .+.+|...|.+++|+|.++.+|++++.|+.|++||++.+..   
T Consensus       186 ~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~  264 (447)
T 3dw8_B          186 NSDYETYLSA-DDLRINLWHLEITDRSFNIVDIKPANMEELTEVITAAEFHPNSCNTFVYSSSKGTIRLCDMRASALCDR  264 (447)
T ss_dssp             CTTSSEEEEE-CSSEEEEEETTEEEEEEEEEECCCSSGGGCCCCEEEEEECSSCTTEEEEEETTSCEEEEETTTCSSSCT
T ss_pred             cCCCCEEEEe-CCCeEEEEECCCCCceeeeeecccccccccCcceEEEEECCCCCcEEEEEeCCCeEEEEECcCCccccc
Confidence            9999999999 799999999984 44443       35689999999999996558999999999999999998776   


Q ss_pred             -EEEeecccc------------cEEEEEEcCCCCeEEEEeCCCcEEEEecCc-cceehcccccccc--------------
Q 021247          236 -VTAMSGHAS------------WVLSVDASPDGAAITTGSSDRTVKLWDLNM-RAAMQSMTNHTDQ--------------  287 (315)
Q Consensus       236 -~~~~~~~~~------------~i~~~~~~~~~~~l~s~~~d~~i~iwd~~~-~~~~~~~~~~~~~--------------  287 (315)
                       +..+..|..            .|.+++|+|++++|++++. +.|++||++. ++.+..+..|...              
T Consensus       265 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~-~~v~iwd~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~  343 (447)
T 3dw8_B          265 HSKLFEEPEDPSNRSFFSEIISSISDVKFSHSGRYMMTRDY-LSVKVWDLNMENRPVETYQVHEYLRSKLCSLYENDCIF  343 (447)
T ss_dssp             TCEEECCC-----CCHHHHHTTCEEEEEECTTSSEEEEEES-SEEEEEETTCCSSCSCCEESCGGGTTTHHHHHHTSGGG
T ss_pred             eeeEeccCCCccccccccccCceEEEEEECCCCCEEEEeeC-CeEEEEeCCCCccccceeeccccccccccccccccccc
Confidence             677777765            8999999999999999999 9999999997 7888888877532              


Q ss_pred             -eEEEEEeeCCCEEEEEeCCCcEEEeecC
Q 021247          288 -VWGVSFRPLGGRVVSVSDDKSISLYEYS  315 (315)
Q Consensus       288 -v~~~~~s~~~~~l~s~~~d~~i~i~~~~  315 (315)
                       +..++|+|++.+|++++.||.|+|||+.
T Consensus       344 ~~~~~~~s~~~~~l~s~s~dg~v~iwd~~  372 (447)
T 3dw8_B          344 DKFECCWNGSDSVVMTGSYNNFFRMFDRN  372 (447)
T ss_dssp             CCCCEEECTTSSEEEEECSTTEEEEEETT
T ss_pred             cceEEEECCCCCEEEEeccCCEEEEEEcC
Confidence             3349999999999999999999999963

>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B

Probab=100.00  E-value=4.6e-37  Score=266.99  Aligned_cols=293  Identities=18%  Similarity=0.292  Sum_probs=234.2

Q ss_pred             ceEEEEEeecCCC------CCcEEEEeeCC----CcEEEEcCC--------------------------CCcc-eeeccc
Q 021247           16 SVWAVTWVPATET------RPALLLTGSLD----ETVKLWRPD--------------------------DMQL-ERTNTG   58 (315)
Q Consensus        16 ~v~~v~~~~~~~~------~~~~l~sgs~d----~~v~~w~~~--------------------------~~~~-~~~~~~   58 (315)
                      +..++.|.|....      ....++.|...    +.|.+.+..                          +.++ .....+
T Consensus        47 p~l~~~~~p~~~~~~~~~~~~~~~~~GT~t~~~~n~i~i~~~~lp~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~  126 (430)
T 2xyi_A           47 PSLTAQWLPDVTKQDGKDYSVHRLILGTHTSDEQNHLLIASVQLPSEDAQFDGSHYDNEKGEFGGFGSVCGKIEIEIKIN  126 (430)
T ss_dssp             CCSCEEECSCCEECTTCSCEEEEEEEECCCSSSCEEEEEEEEEEC--------------------------CEEEEEEEE
T ss_pred             CceEEEECcccccccCCCcceEEEEEEEcCCCCCCEEEEEEEECCCCccccccccccccccccccccCCCCceEEEEEEc
Confidence            6788999986421      11457777642    456666421                          1112 123457


Q ss_pred             cccceEEEEeCCC-CCEEEEeeCCCeEEEEECCC----------CceeEEeeCCcccEEEEEECCCCCeEEEEecCCCeE
Q 021247           59 HCLGVVSVAAHPS-GIIAASASLDSFVRVFDVDT----------NASIATLEASPSEVWQMQFDPKGTTLAVAGGGSASV  127 (315)
Q Consensus        59 h~~~v~~~~~~~~-g~~l~s~~~d~~i~~w~~~~----------~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i  127 (315)
                      |...|++++++|+ +.++++++.||.|++|++.+          ......+..|...+.+++|+|++..++++|+.|+.|
T Consensus       127 h~~~v~~l~~~p~~~~~lat~~~dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i  206 (430)
T 2xyi_A          127 HEGEVNRARYMPQNACVIATKTPSSDVLVFDYTKHPSKPEPSGECQPDLRLRGHQKEGYGLSWNPNLNGYLLSASDDHTI  206 (430)
T ss_dssp             ESSCCSEEEEETTEEEEEEEECSSSCEEEEEGGGSCSSCCTTCCCCCSEEEECCSSCCCCEEECTTSTTEEEEECTTSCE
T ss_pred             CCCcEEEEEECCCCCcEEEEECCCCcEEEEECCCcccccCccccCCCcEEecCCCCCeEEEEeCCCCCCeEEEEeCCCeE
Confidence            8899999999997 68999999999999999986          566778888999999999999988567889999999


Q ss_pred             EEEecCCcceee-eecCCCCCCCCCCccCCCCcceEEEEECC-CCCEEEEecCCCcEEEEEcccc---eeeeeecCCccc
Q 021247          128 KLWDTATWNLIA-TLSIPRPEGLKPTDKSSSKKFVLSVAWSP-DGRRIACGSMDGTISVFDVTRA---KFLHHLEGHFMP  202 (315)
Q Consensus       128 ~~~d~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~s~dg~i~i~d~~~~---~~~~~~~~~~~~  202 (315)
                      ++||+....... .+..       ......|...|.+++|+| ++..|++++.|+.|++||++++   +....+..|...
T Consensus       207 ~vwd~~~~~~~~~~~~~-------~~~~~~h~~~v~~v~~~p~~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~  279 (430)
T 2xyi_A          207 CLWDINATPKEHRVIDA-------KNIFTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAE  279 (430)
T ss_dssp             EEEETTSCCBGGGEEEC-------SEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCSCSSSCSEEEECCSSC
T ss_pred             EEEeCCCCCCCCceecc-------ceeecCCCCCEeeeEEeCCCCCEEEEEeCCCeEEEEECCCCCCCcceeEeecCCCC
Confidence            999998632210 0000       001124556799999999 6788999999999999999876   466777789999


Q ss_pred             eEEEEEcCCCCcEEEEEeCCCeEEEEeCCC-CeeEEEeecccccEEEEEEcCCCC-eEEEEeCCCcEEEEecCc------
Q 021247          203 VRSLVYSPVDPRVLFSASDDTHVHMYDAEG-KSLVTAMSGHASWVLSVDASPDGA-AITTGSSDRTVKLWDLNM------  274 (315)
Q Consensus       203 v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~-~~~~~~~~~~~~~i~~~~~~~~~~-~l~s~~~d~~i~iwd~~~------  274 (315)
                      |++++|+|.+..++++|+.|+.|++||++. ...+..+..|...|.+++|+|+++ +|++++.|+.|++||+..      
T Consensus       280 v~~i~~~p~~~~~l~tg~~dg~v~vwd~~~~~~~~~~~~~h~~~v~~i~~sp~~~~~l~s~~~d~~i~iwd~~~~~~~~~  359 (430)
T 2xyi_A          280 VNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQS  359 (430)
T ss_dssp             EEEEEECSSCTTEEEEEETTSEEEEEETTCTTSCSEEEECCSSCEEEEEECSSCTTEEEEEETTSCCEEEEGGGTTCCCC
T ss_pred             eEEEEeCCCCCCEEEEEeCCCeEEEEeCCCCCCCeEEeecCCCCEEEEEECCCCCCEEEEEeCCCcEEEEeCCCCccccC
Confidence            999999997777899999999999999987 566778888999999999999985 699999999999999986      


Q ss_pred             --------cceehcccccccceEEEEEeeCCC-EEEEEeCCCcEEEeecC
Q 021247          275 --------RAAMQSMTNHTDQVWGVSFRPLGG-RVVSVSDDKSISLYEYS  315 (315)
Q Consensus       275 --------~~~~~~~~~~~~~v~~~~~s~~~~-~l~s~~~d~~i~i~~~~  315 (315)
                              ...+..+.+|...|++++|+|++. +|++++.|+.|+||++.
T Consensus       360 ~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s~dg~i~iw~~~  409 (430)
T 2xyi_A          360 TEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWIICSVSEDNIMQVWQMA  409 (430)
T ss_dssp             HHHHHHCCTTEEEECCCCSSCEEEEEECSSSTTEEEEEETTSEEEEEEEC
T ss_pred             ccccccCCcceEEEcCCCCCCceEEEECCCCCCEEEEEECCCCEEEeEcc
Confidence                    244556678889999999999999 89999999999999974

>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}

Probab=100.00  E-value=5e-37  Score=259.69  Aligned_cols=250  Identities=18%  Similarity=0.273  Sum_probs=207.4

Q ss_pred             hccccceEEEEEeecCCCCCcEEEEeeCCCcEEEEcCCCCc-ceeeccccccceEEEE------eCCCCCEEEEeeCCCe
Q 021247           11 NAHEESVWAVTWVPATETRPALLLTGSLDETVKLWRPDDMQ-LERTNTGHCLGVVSVA------AHPSGIIAASASLDSF   83 (315)
Q Consensus        11 ~~h~~~v~~v~~~~~~~~~~~~l~sgs~d~~v~~w~~~~~~-~~~~~~~h~~~v~~~~------~~~~g~~l~s~~~d~~   83 (315)
                      .+|...|++++|+|... ...+|++|+.||.|++|+..+.+ ....+.+|...|.++.      ++|++.++++++.|+.
T Consensus        62 ~~~~~~v~~~~~~~~~~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~s~~~~~l~~~~~d~~  140 (357)
T 3i2n_A           62 IEKAKPIKCGTFGATSL-QQRYLATGDFGGNLHIWNLEAPEMPVYSVKGHKEIINAIDGIGGLGIGEGAPEIVTGSRDGT  140 (357)
T ss_dssp             EEESSCEEEEECTTCCT-TTCCEEEEETTSCEEEECTTSCSSCSEEECCCSSCEEEEEEESGGGCC-CCCEEEEEETTSC
T ss_pred             ecccCcEEEEEEcCCCC-CCceEEEecCCCeEEEEeCCCCCccEEEEEecccceEEEeeccccccCCCccEEEEEeCCCe
Confidence            37999999999999731 02379999999999999998877 7777889999999994      5789999999999999


Q ss_pred             EEEEECCCCc-eeEEeeCCcc----cEEEEE----ECCCCCeEEEEecCCCeEEEEecCCcceeeeecCCCCCCCCCCcc
Q 021247           84 VRVFDVDTNA-SIATLEASPS----EVWQMQ----FDPKGTTLAVAGGGSASVKLWDTATWNLIATLSIPRPEGLKPTDK  154 (315)
Q Consensus        84 i~~w~~~~~~-~~~~~~~~~~----~v~~~~----~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~  154 (315)
                      |++||+.++. .+..+..+..    .+++++    |+|+++.+ ++++.|+.|++||+++.+......            
T Consensus       141 i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l-~~~~~d~~i~i~d~~~~~~~~~~~------------  207 (357)
T 3i2n_A          141 VKVWDPRQKDDPVANMEPVQGENKRDCWTVAFGNAYNQEERVV-CAGYDNGDIKLFDLRNMALRWETN------------  207 (357)
T ss_dssp             EEEECTTSCSSCSEEECCCTTSCCCCEEEEEEECCCC-CCCEE-EEEETTSEEEEEETTTTEEEEEEE------------
T ss_pred             EEEEeCCCCCCcceeccccCCCCCCceEEEEEEeccCCCCCEE-EEEccCCeEEEEECccCceeeecC------------
Confidence            9999999887 6677755444    788888    67887754 677889999999999877644322            


Q ss_pred             CCCCcceEEEEECC---CCCEEEEecCCCcEEEEEcccceeeeeec-----CCccceEEEEEcCCCCcEEEEEeCCCeEE
Q 021247          155 SSSKKFVLSVAWSP---DGRRIACGSMDGTISVFDVTRAKFLHHLE-----GHFMPVRSLVYSPVDPRVLFSASDDTHVH  226 (315)
Q Consensus       155 ~~~~~~i~~~~~~~---~~~~l~~~s~dg~i~i~d~~~~~~~~~~~-----~~~~~v~~~~~~~~~~~~l~s~~~d~~i~  226 (315)
                        +...|.+++|+|   ++++|++++.||.|++||+++++....+.     +|...|.+++|+|.+..++++++.|+.|+
T Consensus       208 --~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~  285 (357)
T 3i2n_A          208 --IKNGVCSLEFDRKDISMNKLVATSLEGKFHVFDMRTQHPTKGFASVSEKAHKSTVWQVRHLPQNRELFLTAGGAGGLH  285 (357)
T ss_dssp             --CSSCEEEEEESCSSSSCCEEEEEESTTEEEEEEEEEEETTTEEEEEEEECCSSCEEEEEEETTEEEEEEEEETTSEEE
T ss_pred             --CCCceEEEEcCCCCCCCCEEEEECCCCeEEEEeCcCCCcccceeeeccCCCcCCEEEEEECCCCCcEEEEEeCCCcEE
Confidence              234599999999   89999999999999999998877655444     89999999999995545899999999999


Q ss_pred             EEeCCCC-------------------eeEEEeecccccEEEEEEcCCCCeEE-EEeCCCcEEEEecCccc
Q 021247          227 MYDAEGK-------------------SLVTAMSGHASWVLSVDASPDGAAIT-TGSSDRTVKLWDLNMRA  276 (315)
Q Consensus       227 ~wd~~~~-------------------~~~~~~~~~~~~i~~~~~~~~~~~l~-s~~~d~~i~iwd~~~~~  276 (315)
                      +||++..                   +.+..+.+|...|.+++|+|++++|+ +++.|+.|++||+....
T Consensus       286 iwd~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~s~~~d~~i~iw~~~~~~  355 (357)
T 3i2n_A          286 LWKYEYPIQRSKKDSEGIEMGVAGSVSLLQNVTLSTQPISSLDWSPDKRGLCVCSSFDQTVRVLIVTKLN  355 (357)
T ss_dssp             EEEEECCSCC--CCTTSCCCCCCCEEEEEEEEECCSSCEEEEEECSSSTTEEEEEETTSEEEEEEECC--
T ss_pred             EeecCCCcccccccCCCCccccccccceeeccccCCCCeeEEEEcCCCCeEEEEecCCCcEEEEECCCcc
Confidence            9998643                   35667788999999999999999998 89999999999998654

>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}

Probab=100.00  E-value=2.7e-36  Score=260.82  Aligned_cols=257  Identities=20%  Similarity=0.318  Sum_probs=208.2

Q ss_pred             cEEEEcCCCCcceeeccccccceEEEEeCCCCC-EEEEeeCCCeEEEEEC----CCCc------eeEEeeC---------
Q 021247           41 TVKLWRPDDMQLERTNTGHCLGVVSVAAHPSGI-IAASASLDSFVRVFDV----DTNA------SIATLEA---------  100 (315)
Q Consensus        41 ~v~~w~~~~~~~~~~~~~h~~~v~~~~~~~~g~-~l~s~~~d~~i~~w~~----~~~~------~~~~~~~---------  100 (315)
                      .+.+|+.+..........|..+|.+++|+|+|. +|++++.|+.|++|++    .+++      ....+..         
T Consensus        26 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  105 (425)
T 1r5m_A           26 IDSSDDLDGFVKILKEIVKLDNIVSSTWNPLDESILAYGEKNSVARLARIVETDQEGKKYWKLTIIAELRHPFALSASSG  105 (425)
T ss_dssp             --------CCCEECEEEEECSCCSEEEECSSCTTEEEEEETBTEEEEEEEEEC------CEEEEEEEEEECCCCCC----
T ss_pred             ccccccchhhhhheeeeeccCceEEEEECCCCCcEEEEecCCceEEEEEEecccCCcccccccccccccccccccccccc
Confidence            345677654443333445668999999999999 9999999999999999    8877      4444544         


Q ss_pred             -CcccEEEEEECCCCCeEEEEecCCCeEEEEecCCcceeeeecCCCCCCCCCCccCCCCcceEEEEECCCCCEEEEecCC
Q 021247          101 -SPSEVWQMQFDPKGTTLAVAGGGSASVKLWDTATWNLIATLSIPRPEGLKPTDKSSSKKFVLSVAWSPDGRRIACGSMD  179 (315)
Q Consensus       101 -~~~~v~~~~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~s~d  179 (315)
                       |...|.+++|+|+++.+ ++++.|+.|++|| .+++.+..+.             .|...|.+++|+|++++|++++.|
T Consensus       106 ~~~~~v~~~~~s~~~~~l-~~~~~dg~i~i~~-~~~~~~~~~~-------------~~~~~v~~~~~~~~~~~l~~~~~d  170 (425)
T 1r5m_A          106 KTTNQVTCLAWSHDGNSI-VTGVENGELRLWN-KTGALLNVLN-------------FHRAPIVSVKWNKDGTHIISMDVE  170 (425)
T ss_dssp             --CBCEEEEEECTTSSEE-EEEETTSCEEEEE-TTSCEEEEEC-------------CCCSCEEEEEECTTSSEEEEEETT
T ss_pred             CCCCceEEEEEcCCCCEE-EEEeCCCeEEEEe-CCCCeeeecc-------------CCCccEEEEEECCCCCEEEEEecC
Confidence             56799999999998865 5778899999999 4455555442             244568999999999999999999


Q ss_pred             CcEEEEEcccceeee--------------------------------------------------------eecCCccce
Q 021247          180 GTISVFDVTRAKFLH--------------------------------------------------------HLEGHFMPV  203 (315)
Q Consensus       180 g~i~i~d~~~~~~~~--------------------------------------------------------~~~~~~~~v  203 (315)
                      +.|++||+.+++.+.                                                        .+..|..+|
T Consensus       171 ~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~i  250 (425)
T 1r5m_A          171 NVTILWNVISGTVMQHFELKETGGSSINAENHSGDGSLGVDVEWVDDDKFVIPGPKGAIFVYQITEKTPTGKLIGHHGPI  250 (425)
T ss_dssp             CCEEEEETTTTEEEEEECCC---------------CCCBSCCEEEETTEEEEECGGGCEEEEETTCSSCSEEECCCSSCE
T ss_pred             CeEEEEECCCCcEEEEeeccccCccceeeccccCCcceeeEEEEcCCCEEEEEcCCCeEEEEEcCCCceeeeeccCCCce
Confidence            999999987665432                                                        234577789


Q ss_pred             EEEEEcCCCCcEEEEEeCCCeEEEEeCCCCeeEEEeecccccEEEEEEcCCCCeEEEEeCCCcEEEEecCccceehcccc
Q 021247          204 RSLVYSPVDPRVLFSASDDTHVHMYDAEGKSLVTAMSGHASWVLSVDASPDGAAITTGSSDRTVKLWDLNMRAAMQSMTN  283 (315)
Q Consensus       204 ~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~  283 (315)
                      .+++|+| ++++|++++.|+.|++||++.++.+..+..|...|.+++|+|++ .+++++.|+.|++||++.++.+..+..
T Consensus       251 ~~~~~~~-~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~d~~i~i~d~~~~~~~~~~~~  328 (425)
T 1r5m_A          251 SVLEFND-TNKLLLSASDDGTLRIWHGGNGNSQNCFYGHSQSIVSASWVGDD-KVISCSMDGSVRLWSLKQNTLLALSIV  328 (425)
T ss_dssp             EEEEEET-TTTEEEEEETTSCEEEECSSSBSCSEEECCCSSCEEEEEEETTT-EEEEEETTSEEEEEETTTTEEEEEEEC
T ss_pred             EEEEECC-CCCEEEEEcCCCEEEEEECCCCccceEecCCCccEEEEEECCCC-EEEEEeCCCcEEEEECCCCcEeEeccc
Confidence            9999998 56799999999999999999988888888999999999999999 999999999999999999998888888


Q ss_pred             cccceEEEEEeeCCCEEEEEeCCCcEEEeec
Q 021247          284 HTDQVWGVSFRPLGGRVVSVSDDKSISLYEY  314 (315)
Q Consensus       284 ~~~~v~~~~~s~~~~~l~s~~~d~~i~i~~~  314 (315)
                      |...+.+++|+|++++|++++.||.|+||++
T Consensus       329 ~~~~i~~~~~s~~~~~l~~~~~dg~i~i~~~  359 (425)
T 1r5m_A          329 DGVPIFAGRISQDGQKYAVAFMDGQVNVYDL  359 (425)
T ss_dssp             TTCCEEEEEECTTSSEEEEEETTSCEEEEEC
T ss_pred             CCccEEEEEEcCCCCEEEEEECCCeEEEEEC
Confidence            9999999999999999999999999999996

>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3

Probab=100.00  E-value=2.2e-35  Score=253.05  Aligned_cols=265  Identities=18%  Similarity=0.251  Sum_probs=225.6

Q ss_pred             cEEEEeeCCCcEEEEcCCCCcceeeccccccceEEEEeCCCCCEE-EEeeCCCeEEEEECCCCceeEEeeCCcccEEEEE
Q 021247           31 ALLLTGSLDETVKLWRPDDMQLERTNTGHCLGVVSVAAHPSGIIA-ASASLDSFVRVFDVDTNASIATLEASPSEVWQMQ  109 (315)
Q Consensus        31 ~~l~sgs~d~~v~~w~~~~~~~~~~~~~h~~~v~~~~~~~~g~~l-~s~~~d~~i~~w~~~~~~~~~~~~~~~~~v~~~~  109 (315)
                      -++++++.|+.|++||..+.++...+..|. .+.+++++|+|.++ ++++.|+.|++||+.+++.+..+..+. .+..++
T Consensus         3 ~l~vs~~~d~~v~v~d~~~~~~~~~~~~~~-~~~~~~~s~dg~~l~~~~~~d~~i~v~d~~~~~~~~~~~~~~-~v~~~~   80 (391)
T 1l0q_A            3 FAYIANSESDNISVIDVTSNKVTATIPVGS-NPMGAVISPDGTKVYVANAHSNDVSIIDTATNNVIATVPAGS-SPQGVA   80 (391)
T ss_dssp             EEEEEETTTTEEEEEETTTTEEEEEEECSS-SEEEEEECTTSSEEEEEEGGGTEEEEEETTTTEEEEEEECSS-SEEEEE
T ss_pred             EEEEEcCCCCEEEEEECCCCeEEEEeecCC-CcceEEECCCCCEEEEECCCCCeEEEEECCCCeEEEEEECCC-CccceE
Confidence            368999999999999999888877777664 48999999999876 677799999999999999888877655 899999


Q ss_pred             ECCCCCeEEEEecCCCeEEEEecCCcceeeeecCCCCCCCCCCccCCCCcceEEEEECCCCCEE-EEecCCCcEEEEEcc
Q 021247          110 FDPKGTTLAVAGGGSASVKLWDTATWNLIATLSIPRPEGLKPTDKSSSKKFVLSVAWSPDGRRI-ACGSMDGTISVFDVT  188 (315)
Q Consensus       110 ~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l-~~~s~dg~i~i~d~~  188 (315)
                      |+|+++.+++++..++.|++||+.+++.+..+...              ..+.+++|+|+++.+ ++++.++.|++||+.
T Consensus        81 ~spdg~~l~~~~~~~~~v~v~d~~~~~~~~~~~~~--------------~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~  146 (391)
T 1l0q_A           81 VSPDGKQVYVTNMASSTLSVIDTTSNTVAGTVKTG--------------KSPLGLALSPDGKKLYVTNNGDKTVSVINTV  146 (391)
T ss_dssp             ECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECS--------------SSEEEEEECTTSSEEEEEETTTTEEEEEETT
T ss_pred             ECCCCCEEEEEECCCCEEEEEECCCCeEEEEEeCC--------------CCcceEEECCCCCEEEEEeCCCCEEEEEECC
Confidence            99999988888888899999999988777665421              237899999999977 688889999999999


Q ss_pred             cceeeeeecCCccceEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCeeEEEeecccccEEEEEEcCCCCeEEEEe---CCC
Q 021247          189 RAKFLHHLEGHFMPVRSLVYSPVDPRVLFSASDDTHVHMYDAEGKSLVTAMSGHASWVLSVDASPDGAAITTGS---SDR  265 (315)
Q Consensus       189 ~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~---~d~  265 (315)
                      +++....+..+. .+..+.|+|++..++++++.++.|++||+++++.+..+. +...+.+++|+|++++|++++   .++
T Consensus       147 ~~~~~~~~~~~~-~~~~~~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~-~~~~~~~~~~~~~g~~l~~~~~~~~~~  224 (391)
T 1l0q_A          147 TKAVINTVSVGR-SPKGIAVTPDGTKVYVANFDSMSISVIDTVTNSVIDTVK-VEAAPSGIAVNPEGTKAYVTNVDKYFN  224 (391)
T ss_dssp             TTEEEEEEECCS-SEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEE-CSSEEEEEEECTTSSEEEEEEECSSCC
T ss_pred             CCcEEEEEecCC-CcceEEECCCCCEEEEEeCCCCEEEEEECCCCeEEEEEe-cCCCccceEECCCCCEEEEEecCcCCC
Confidence            998888777664 568999999655555788899999999999988776665 456789999999999988888   789


Q ss_pred             cEEEEecCccceehcccccccceEEEEEeeCCCEE-EEEeCCCcEEEeec
Q 021247          266 TVKLWDLNMRAAMQSMTNHTDQVWGVSFRPLGGRV-VSVSDDKSISLYEY  314 (315)
Q Consensus       266 ~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l-~s~~~d~~i~i~~~  314 (315)
                      .|++||++.++.+..+..|. .+.+++|+|+|++| ++++.|++|++||+
T Consensus       225 ~v~~~d~~~~~~~~~~~~~~-~~~~~~~s~dg~~l~~s~~~d~~v~v~d~  273 (391)
T 1l0q_A          225 TVSMIDTGTNKITARIPVGP-DPAGIAVTPDGKKVYVALSFXNTVSVIDT  273 (391)
T ss_dssp             EEEEEETTTTEEEEEEECCS-SEEEEEECTTSSEEEEEETTTTEEEEEET
T ss_pred             cEEEEECCCCeEEEEEecCC-CccEEEEccCCCEEEEEcCCCCEEEEEEC
Confidence            99999999988887777664 57899999999988 67788999999996

>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}

Probab=100.00  E-value=9.2e-36  Score=252.80  Aligned_cols=244  Identities=20%  Similarity=0.268  Sum_probs=216.5

Q ss_pred             eeccccccceEEEEeCCCCCEEEEeeCCCeEEEEECCCCceeEEeeCCcccEEEEEECCCCCeEEEEecCCCeEEEEecC
Q 021247           54 RTNTGHCLGVVSVAAHPSGIIAASASLDSFVRVFDVDTNASIATLEASPSEVWQMQFDPKGTTLAVAGGGSASVKLWDTA  133 (315)
Q Consensus        54 ~~~~~h~~~v~~~~~~~~g~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~~d~~  133 (315)
                      ..+.+|..+|.+++|+|+|.+|++++.|+.|++||+.+++.+..+..|...|.+++|+|+++.+ ++++.|+.|++||+.
T Consensus        26 ~~l~~h~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l-~s~~~dg~i~iwd~~  104 (369)
T 3zwl_B           26 IKLTGHERPLTQVKYNKEGDLLFSCSKDSSASVWYSLNGERLGTLDGHTGTIWSIDVDCFTKYC-VTGSADYSIKLWDVS  104 (369)
T ss_dssp             EEEECCSSCEEEEEECTTSCEEEEEESSSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEE-EEEETTTEEEEEETT
T ss_pred             EEEEEeeceEEEEEEcCCCCEEEEEeCCCEEEEEeCCCchhhhhhhhcCCcEEEEEEcCCCCEE-EEEeCCCeEEEEECC
Confidence            3467899999999999999999999999999999999999999999999999999999998865 677889999999999


Q ss_pred             CcceeeeecCCCCCCCCCCccCCCCcceEEEEECCCCCEEEEecCC-----CcEEEEEcccce-----------eeeeec
Q 021247          134 TWNLIATLSIPRPEGLKPTDKSSSKKFVLSVAWSPDGRRIACGSMD-----GTISVFDVTRAK-----------FLHHLE  197 (315)
Q Consensus       134 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~s~d-----g~i~i~d~~~~~-----------~~~~~~  197 (315)
                      +++.+..+..              ...+.+++|+|++++|++++.+     +.|++||+....           ....+.
T Consensus       105 ~~~~~~~~~~--------------~~~v~~~~~~~~~~~l~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~  170 (369)
T 3zwl_B          105 NGQCVATWKS--------------PVPVKRVEFSPCGNYFLAILDNVMKNPGSINIYEIERDSATHELTKVSEEPIHKII  170 (369)
T ss_dssp             TCCEEEEEEC--------------SSCEEEEEECTTSSEEEEEECCBTTBCCEEEEEEEEECTTTCCEEEECSSCSEEEE
T ss_pred             CCcEEEEeec--------------CCCeEEEEEccCCCEEEEecCCccCCCCEEEEEEecCCccceeecccccceeeecc
Confidence            8887776642              2348999999999999999998     999999987553           233444


Q ss_pred             CCcc--ceEEEEEcCCCCcEEEEEeCCCeEEEEeCCC-CeeEEEeecccccEEEEEEcCCCCeEEEEeCCCcEEEEecCc
Q 021247          198 GHFM--PVRSLVYSPVDPRVLFSASDDTHVHMYDAEG-KSLVTAMSGHASWVLSVDASPDGAAITTGSSDRTVKLWDLNM  274 (315)
Q Consensus       198 ~~~~--~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~-~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~d~~i~iwd~~~  274 (315)
                      .|..  .+.+++|+| +++++++++.|+.|++||++. ...+..+..|...|.+++|+|++++|++++.|+.|++||+++
T Consensus       171 ~~~~~~~~~~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~  249 (369)
T 3zwl_B          171 THEGLDAATVAGWST-KGKYIIAGHKDGKISKYDVSNNYEYVDSIDLHEKSISDMQFSPDLTYFITSSRDTNSFLVDVST  249 (369)
T ss_dssp             CCTTCCCEEEEEECG-GGCEEEEEETTSEEEEEETTTTTEEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTT
T ss_pred             CCcCccceeEEEEcC-CCCEEEEEcCCCEEEEEECCCCcEeEEEEecCCCceeEEEECCCCCEEEEecCCceEEEEECCC
Confidence            5555  899999998 677999999999999999998 788888899999999999999999999999999999999999


Q ss_pred             cceehcccccccceEEEEEeeCCCEEEEEeCCC--------------cEEEeec
Q 021247          275 RAAMQSMTNHTDQVWGVSFRPLGGRVVSVSDDK--------------SISLYEY  314 (315)
Q Consensus       275 ~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~--------------~i~i~~~  314 (315)
                      ++.+..+. +...+.+++|+|++.++++++.++              .+++||.
T Consensus       250 ~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~d~  302 (369)
T 3zwl_B          250 LQVLKKYE-TDCPLNTAVITPLKEFIILGGGQEAKDVTTTSANEGKFEARFYHK  302 (369)
T ss_dssp             CCEEEEEE-CSSCEEEEEECSSSSEEEEEECCC-------------CEEEEEET
T ss_pred             Cceeeeec-CCCCceeEEecCCCceEEEeecCCCceEEEEecCCCcceeEEEec
Confidence            88887775 678899999999999999999998              7899885

>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}

Probab=100.00  E-value=4.7e-36  Score=262.19  Aligned_cols=282  Identities=13%  Similarity=0.082  Sum_probs=224.7

Q ss_pred             ccceEEEEEeecCCCCCcEEEEeeCCCcEEEEcCCCCc---ceeecc---------------------------------
Q 021247           14 EESVWAVTWVPATETRPALLLTGSLDETVKLWRPDDMQ---LERTNT---------------------------------   57 (315)
Q Consensus        14 ~~~v~~v~~~~~~~~~~~~l~sgs~d~~v~~w~~~~~~---~~~~~~---------------------------------   57 (315)
                      ..++.+++|+|++.    +|+ ++.++.|++|+..+++   ......                                 
T Consensus         4 ~~p~~~v~~s~dg~----~l~-~~~~~~i~v~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   78 (450)
T 2vdu_B            4 IHPLQNLLTSRDGS----LVF-AIIKNCILSFKYQSPNHWEFAGKWSDDFDKIQESRNTTAKEQQGQSSENENENKKLKS   78 (450)
T ss_dssp             ECCCCEEEECSSSS----EEE-EEETTEEEEEEEETTTEEEEEEEEECCC------------------------------
T ss_pred             cccEEEEEecCCCC----EEE-EEeCCeEEEEECCCCCcceeeeecCCccccccccccccchhhcccccccccccccccc
Confidence            35889999999875    444 4568899999987766   322221                                 


Q ss_pred             ---------------------ccccceEEEEeCCCCCEE-EEeeCCCeEEEEECC--CCceeEEee--CCcccEEEEEEC
Q 021247           58 ---------------------GHCLGVVSVAAHPSGIIA-ASASLDSFVRVFDVD--TNASIATLE--ASPSEVWQMQFD  111 (315)
Q Consensus        58 ---------------------~h~~~v~~~~~~~~g~~l-~s~~~d~~i~~w~~~--~~~~~~~~~--~~~~~v~~~~~~  111 (315)
                                           +|...|.+++|+|+|.+| ++++.|+.|++||+.  ++..+..+.  .+...|.+++|+
T Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~s  158 (450)
T 2vdu_B           79 NKGDSIKRTAAKVPSPGLGAPPIYSYIRNLRLTSDESRLIACADSDKSLLVFDVDKTSKNVLKLRKRFCFSKRPNAISIA  158 (450)
T ss_dssp             ---------------------CCCCCEEEEEECTTSSEEEEEEGGGTEEEEEEECSSSSSCEEEEEEEECSSCEEEEEEC
T ss_pred             CcCccccccCccccCCCCCCCccCCceEEEEEcCCCCEEEEEECCCCeEEEEECcCCCCceeeeeecccCCCCceEEEEc
Confidence                                 344479999999999986 899999999999999  777777765  456889999999


Q ss_pred             CCCCeEEEEecCCCeEEEEecCCcceeeeecCCCCCCCCCCccCCCCcceEEEEECCC---CCEEEEecCCCcEEEEEcc
Q 021247          112 PKGTTLAVAGGGSASVKLWDTATWNLIATLSIPRPEGLKPTDKSSSKKFVLSVAWSPD---GRRIACGSMDGTISVFDVT  188 (315)
Q Consensus       112 ~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~---~~~l~~~s~dg~i~i~d~~  188 (315)
                      |+++.+ ++++.++.+++|++.+.+....         .......|...|.+++|+|+   +++|++++.|+.|++||+.
T Consensus       159 p~~~~l-~~~~~~g~v~~~~~~~~~~~~~---------~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~d~~i~vwd~~  228 (450)
T 2vdu_B          159 EDDTTV-IIADKFGDVYSIDINSIPEEKF---------TQEPILGHVSMLTDVHLIKDSDGHQFIITSDRDEHIKISHYP  228 (450)
T ss_dssp             TTSSEE-EEEETTSEEEEEETTSCCCSSC---------CCCCSEECSSCEEEEEEEECTTSCEEEEEEETTSCEEEEEES
T ss_pred             CCCCEE-EEEeCCCcEEEEecCCcccccc---------cceeeecccCceEEEEEcCCCCCCcEEEEEcCCCcEEEEECC
Confidence            998865 5677899999999976543210         00012245567999999999   9999999999999999999


Q ss_pred             cceeeee-ecCCccceEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCeeEEEeec-------------------------c
Q 021247          189 RAKFLHH-LEGHFMPVRSLVYSPVDPRVLFSASDDTHVHMYDAEGKSLVTAMSG-------------------------H  242 (315)
Q Consensus       189 ~~~~~~~-~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~-------------------------~  242 (315)
                      +++.+.. +.+|...|.+++|+  ++++|++++.|+.|++||+++++.+..+..                         .
T Consensus       229 ~~~~~~~~~~~h~~~v~~~~~s--d~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  306 (450)
T 2vdu_B          229 QCFIVDKWLFGHKHFVSSICCG--KDYLLLSAGGDDKIFAWDWKTGKNLSTFDYNSLIKPYLNDQHLAPPRFQNENNDII  306 (450)
T ss_dssp             CTTCEEEECCCCSSCEEEEEEC--STTEEEEEESSSEEEEEETTTCCEEEEEECHHHHGGGCCTTSBC----------CB
T ss_pred             CCceeeeeecCCCCceEEEEEC--CCCEEEEEeCCCeEEEEECCCCcEeeeecchhhhhhhhhhcccccccccccccccc
Confidence            8887776 56899999999999  778999999999999999999887776652                         2


Q ss_pred             cccEEEEEEcCCCCeEEEEe-CCCcEEEEec--Ccc---ceehcccccccceEEEEEeeCCCEEEEEeC-------CCcE
Q 021247          243 ASWVLSVDASPDGAAITTGS-SDRTVKLWDL--NMR---AAMQSMTNHTDQVWGVSFRPLGGRVVSVSD-------DKSI  309 (315)
Q Consensus       243 ~~~i~~~~~~~~~~~l~s~~-~d~~i~iwd~--~~~---~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~-------d~~i  309 (315)
                      ...|.+++++|++++|++++ .|+.|++|++  ..+   ..+..+..| ..+++++|+|++ .+++.+.       +..|
T Consensus       307 ~~~v~~i~~~~~~~~l~~~~~~d~~i~iw~~~~~~~~~l~~~~~~~~~-~~v~~~~~~~~~-~~v~~~~~~~~~~~~~~i  384 (450)
T 2vdu_B          307 EFAVSKIIKSKNLPFVAFFVEATKCIIILEMSEKQKGDLALKQIITFP-YNVISLSAHNDE-FQVTLDNKESSGVQKNFA  384 (450)
T ss_dssp             CCCEEEEEECSSSSEEEEEETTCSEEEEEEECSSSTTCEEEEEEEECS-SCEEEEEEETTE-EEEEECCTTCCSSCCCSE
T ss_pred             eEEEEEEEEeCCCCEEEEEECCCCeEEEEEeccCCCCceeeccEeccC-CceEEEEecCCc-EEEEEecccCCCCCCcce
Confidence            35689999999999999998 8999999999  554   556667777 789999999954 5555433       5568


Q ss_pred             EEeec
Q 021247          310 SLYEY  314 (315)
Q Consensus       310 ~i~~~  314 (315)
                      +||.+
T Consensus       385 ~v~~~  389 (450)
T 2vdu_B          385 KFIEY  389 (450)
T ss_dssp             EEEEE
T ss_pred             EEEEE
Confidence            99875

>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}

Probab=100.00  E-value=2.8e-37  Score=268.76  Aligned_cols=266  Identities=13%  Similarity=0.171  Sum_probs=211.2

Q ss_pred             EEcCCCCcceeec-cccccceEEEEeCC-CCCEEEEeeCCCeEEEEECCC---Cc---eeEEeeCCcccEEEEEECCCCC
Q 021247           44 LWRPDDMQLERTN-TGHCLGVVSVAAHP-SGIIAASASLDSFVRVFDVDT---NA---SIATLEASPSEVWQMQFDPKGT  115 (315)
Q Consensus        44 ~w~~~~~~~~~~~-~~h~~~v~~~~~~~-~g~~l~s~~~d~~i~~w~~~~---~~---~~~~~~~~~~~v~~~~~~~~~~  115 (315)
                      .|++. +++...+ .+|..+|.+++|+| ++.+|++|+.|++|++||+.+   +.   ....+ .|..+|.+++|+|+++
T Consensus        47 ~w~~~-g~~~~~~~~~h~~~V~~~~~s~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~-~h~~~v~~~~~~~~~~  124 (437)
T 3gre_A           47 MGNLR-GKLIATLMENEPNSITSSAVSPGETPYLITGSDQGVIKIWNLKEIIVGEVYSSSLTY-DCSSTVTQITMIPNFD  124 (437)
T ss_dssp             GGGCC-CCEEEEECTTTTSCEEEEEEECSSSCEEEEEETTSEEEEEEHHHHHTTCCCSCSEEE-ECSSCEEEEEECTTSS
T ss_pred             ccccc-ceEEeeeccCCCCceEEEEECCCCCCEEEEecCCceEEEeECcccccCcccceeeec-cCCCCEEEEEEeCCCC
Confidence            48854 4555666 88999999999999 999999999999999999876   33   23333 3788999999999887


Q ss_pred             eEEEEecCCCeEEEEecC---CcceeeeecCCCCCCCCCCccCCCCcceEEEE--ECCCCCEEEEecCCCcEEEEEcccc
Q 021247          116 TLAVAGGGSASVKLWDTA---TWNLIATLSIPRPEGLKPTDKSSSKKFVLSVA--WSPDGRRIACGSMDGTISVFDVTRA  190 (315)
Q Consensus       116 ~~~~~~~~d~~i~~~d~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~--~~~~~~~l~~~s~dg~i~i~d~~~~  190 (315)
                      .+ ++++.|++|++||+.   .++.............. .....+...+.++.  +++++++|++++.|+.|++||++++
T Consensus       125 ~l-~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~i~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~  202 (437)
T 3gre_A          125 AF-AVSSKDGQIIVLKVNHYQQESEVKFLNCECIRKIN-LKNFGKNEYAVRMRAFVNEEKSLLVALTNLSRVIIFDIRTL  202 (437)
T ss_dssp             EE-EEEETTSEEEEEEEEEEEETTEEEEEEEEEEEEEE-GGGGSSCCCEEEEEEEECSSCEEEEEEETTSEEEEEETTTC
T ss_pred             EE-EEEeCCCEEEEEEeccccCCceeeccccceeEEEE-ccCcccccCceEEEEEEcCCCCEEEEEeCCCeEEEEeCCCC
Confidence            54 678899999999995   44433322111000000 00000334466776  6688999999999999999999999


Q ss_pred             eeeeeecC--CccceEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCeeEEEee-cccccEEEEEEc----CCCCeEEEEeC
Q 021247          191 KFLHHLEG--HFMPVRSLVYSPVDPRVLFSASDDTHVHMYDAEGKSLVTAMS-GHASWVLSVDAS----PDGAAITTGSS  263 (315)
Q Consensus       191 ~~~~~~~~--~~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~-~~~~~i~~~~~~----~~~~~l~s~~~  263 (315)
                      +.+..+..  |...|.+++|+| ++.+|++++.|+.|++||++.++.+..+. .|...|.+++++    |++.+|++|+.
T Consensus       203 ~~~~~~~~~~h~~~v~~~~~s~-~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~s~~~~~l~s~~~  281 (437)
T 3gre_A          203 ERLQIIENSPRHGAVSSICIDE-ECCVLILGTTRGIIDIWDIRFNVLIRSWSFGDHAPITHVEVCQFYGKNSVIVVGGSS  281 (437)
T ss_dssp             CEEEEEECCGGGCCEEEEEECT-TSCEEEEEETTSCEEEEETTTTEEEEEEBCTTCEEEEEEEECTTTCTTEEEEEEEST
T ss_pred             eeeEEEccCCCCCceEEEEECC-CCCEEEEEcCCCeEEEEEcCCccEEEEEecCCCCceEEEEeccccCCCccEEEEEcC
Confidence            99988887  889999999998 57899999999999999999998888776 788899999665    46779999999


Q ss_pred             CCcEEEEecCccceehcccc--------------------------cccceEEEEEeeCCCEEEEEeCCCcEEEeecC
Q 021247          264 DRTVKLWDLNMRAAMQSMTN--------------------------HTDQVWGVSFRPLGGRVVSVSDDKSISLYEYS  315 (315)
Q Consensus       264 d~~i~iwd~~~~~~~~~~~~--------------------------~~~~v~~~~~s~~~~~l~s~~~d~~i~i~~~~  315 (315)
                      |+.|++||+++++.+..+.+                          |...|++++|+ ++++|++++.|++|++||+.
T Consensus       282 dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~~-~~~~l~s~~~d~~i~~wd~~  358 (437)
T 3gre_A          282 KTFLTIWNFVKGHCQYAFINSDEQPSMEHFLPIEKGLEELNFCGIRSLNALSTISVS-NDKILLTDEATSSIVMFSLN  358 (437)
T ss_dssp             TEEEEEEETTTTEEEEEEESSSSCCCGGGGSCBCSSGGGCCCCCCCSGGGGCCEEEE-TTEEEEEEGGGTEEEEEETT
T ss_pred             CCcEEEEEcCCCcEEEEEEcCCCCCccceecccccccccceecccccCCceEEEEEC-CceEEEecCCCCeEEEEECC
Confidence            99999999998776554432                          56678899999 77899999999999999963

>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}

Probab=100.00  E-value=8.3e-36  Score=247.68  Aligned_cols=245  Identities=20%  Similarity=0.272  Sum_probs=212.8

Q ss_pred             CcceeeccccccceEEEEeCCCCCEEEEeeCCCeEEEEECCCCceeEEeeCCcccEEEEEECCCCCeEEEEecCCCeEEE
Q 021247           50 MQLERTNTGHCLGVVSVAAHPSGIIAASASLDSFVRVFDVDTNASIATLEASPSEVWQMQFDPKGTTLAVAGGGSASVKL  129 (315)
Q Consensus        50 ~~~~~~~~~h~~~v~~~~~~~~g~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~  129 (315)
                      .++.+.+.+|..+|.++++ +++.++++++.||.|++||+.++.....+..+...|.+++|+|+++.+ ++++.|+.+++
T Consensus         8 ~~~~~~l~~h~~~v~~~~~-~~~~~l~s~~~dg~v~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l-~~~~~dg~i~~   85 (313)
T 3odt_A            8 YQLSATLKGHDQDVRDVVA-VDDSKVASVSRDGTVRLWSKDDQWLGTVVYTGQGFLNSVCYDSEKELL-LFGGKDTMING   85 (313)
T ss_dssp             CEEEEEECCCSSCEEEEEE-EETTEEEEEETTSEEEEEEESSSEEEEEEEECSSCEEEEEEETTTTEE-EEEETTSCEEE
T ss_pred             HHHHHHhhCCCCCcEEEEe-cCCCEEEEEEcCCcEEEEECCCCEEEEEeecCCccEEEEEECCCCCEE-EEecCCCeEEE
Confidence            3566778899999999999 999999999999999999999988888888899999999999998855 67789999999


Q ss_pred             EecCCcceeeeecCCCCCCCCCCccCCCCcceEEEEECCCCCEEEEecCCCcEEEEEcccceeeeeecCCccceEEEEEc
Q 021247          130 WDTATWNLIATLSIPRPEGLKPTDKSSSKKFVLSVAWSPDGRRIACGSMDGTISVFDVTRAKFLHHLEGHFMPVRSLVYS  209 (315)
Q Consensus       130 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~s~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~  209 (315)
                      |++.......          .......+...|.+++|  ++++|++++.|+.|++||  .++....+..|..++.++.|.
T Consensus        86 ~~~~~~~~~~----------~~~~~~~~~~~i~~~~~--~~~~l~~~~~d~~i~~~d--~~~~~~~~~~~~~~v~~~~~~  151 (313)
T 3odt_A           86 VPLFATSGED----------PLYTLIGHQGNVCSLSF--QDGVVISGSWDKTAKVWK--EGSLVYNLQAHNASVWDAKVV  151 (313)
T ss_dssp             EETTCCTTSC----------C-CEECCCSSCEEEEEE--ETTEEEEEETTSEEEEEE--TTEEEEEEECCSSCEEEEEEE
T ss_pred             EEeeecCCCC----------cccchhhcccCEEEEEe--cCCEEEEEeCCCCEEEEc--CCcEEEecccCCCceeEEEEc
Confidence            9986532110          01112345567899999  577999999999999999  667778888999999999999


Q ss_pred             CCCCcEEEEEeCCCeEEEEeCCCCeeEEEeec-ccccEEEEEEcCCCCeEEEEeCCCcEEEEecCccceehcccccccce
Q 021247          210 PVDPRVLFSASDDTHVHMYDAEGKSLVTAMSG-HASWVLSVDASPDGAAITTGSSDRTVKLWDLNMRAAMQSMTNHTDQV  288 (315)
Q Consensus       210 ~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~-~~~~i~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v  288 (315)
                      |.++.++++++.|+.|++||  ..+....+.. |...+.+++++|++. +++++.|+.|++||++.++.+..+..|...|
T Consensus       152 ~~~~~~l~~~~~d~~i~i~d--~~~~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i  228 (313)
T 3odt_A          152 SFSENKFLTASADKTIKLWQ--NDKVIKTFSGIHNDVVRHLAVVDDGH-FISCSNDGLIKLVDMHTGDVLRTYEGHESFV  228 (313)
T ss_dssp             ETTTTEEEEEETTSCEEEEE--TTEEEEEECSSCSSCEEEEEEEETTE-EEEEETTSEEEEEETTTCCEEEEEECCSSCE
T ss_pred             cCCCCEEEEEECCCCEEEEe--cCceEEEEeccCcccEEEEEEcCCCe-EEEccCCCeEEEEECCchhhhhhhhcCCceE
Confidence            87788999999999999999  3445556665 899999999999988 9999999999999999999999999999999


Q ss_pred             EEEEEeeCCCEEEEEeCCCcEEEeec
Q 021247          289 WGVSFRPLGGRVVSVSDDKSISLYEY  314 (315)
Q Consensus       289 ~~~~~s~~~~~l~s~~~d~~i~i~~~  314 (315)
                      ++++|+|++ +|++++.||.|++||+
T Consensus       229 ~~~~~~~~~-~l~~~~~dg~v~iwd~  253 (313)
T 3odt_A          229 YCIKLLPNG-DIVSCGEDRTVRIWSK  253 (313)
T ss_dssp             EEEEECTTS-CEEEEETTSEEEEECT
T ss_pred             EEEEEecCC-CEEEEecCCEEEEEEC
Confidence            999999999 6999999999999996

>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B

Probab=100.00  E-value=9.4e-37  Score=265.05  Aligned_cols=250  Identities=20%  Similarity=0.291  Sum_probs=212.8

Q ss_pred             hhccccceEEEEEeecCCCCCcEEEEeeCCCcEEEEcCCC----------CcceeeccccccceEEEEeCCCCC-EEEEe
Q 021247           10 ENAHEESVWAVTWVPATETRPALLLTGSLDETVKLWRPDD----------MQLERTNTGHCLGVVSVAAHPSGI-IAASA   78 (315)
Q Consensus        10 ~~~h~~~v~~v~~~~~~~~~~~~l~sgs~d~~v~~w~~~~----------~~~~~~~~~h~~~v~~~~~~~~g~-~l~s~   78 (315)
                      ...|.+.|++++|+|..   ..+|++|+.||.|++|+...          .+....+.+|...+.+++|+|++. +|+++
T Consensus       124 ~~~h~~~v~~l~~~p~~---~~~lat~~~dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~  200 (430)
T 2xyi_A          124 KINHEGEVNRARYMPQN---ACVIATKTPSSDVLVFDYTKHPSKPEPSGECQPDLRLRGHQKEGYGLSWNPNLNGYLLSA  200 (430)
T ss_dssp             EEEESSCCSEEEEETTE---EEEEEEECSSSCEEEEEGGGSCSSCCTTCCCCCSEEEECCSSCCCCEEECTTSTTEEEEE
T ss_pred             EEcCCCcEEEEEECCCC---CcEEEEECCCCcEEEEECCCcccccCccccCCCcEEecCCCCCeEEEEeCCCCCCeEEEE
Confidence            35899999999999953   23899999999999999865          455566788999999999999998 99999


Q ss_pred             eCCCeEEEEECCCCce-------eEEeeCCcccEEEEEECCCCCeEEEEecCCCeEEEEecCCcc---eeeeecCCCCCC
Q 021247           79 SLDSFVRVFDVDTNAS-------IATLEASPSEVWQMQFDPKGTTLAVAGGGSASVKLWDTATWN---LIATLSIPRPEG  148 (315)
Q Consensus        79 ~~d~~i~~w~~~~~~~-------~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~~d~~~~~---~~~~~~~~~~~~  148 (315)
                      +.||.|++|++..+..       ...+..|...|.+++|+|.+..++++++.|+.|++||+++.+   .+..+       
T Consensus       201 ~~dg~i~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~-------  273 (430)
T 2xyi_A          201 SDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTV-------  273 (430)
T ss_dssp             CTTSCEEEEETTSCCBGGGEEECSEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCSCSSSCSEEE-------
T ss_pred             eCCCeEEEEeCCCCCCCCceeccceeecCCCCCEeeeEEeCCCCCEEEEEeCCCeEEEEECCCCCCCcceeEe-------
Confidence            9999999999987432       355667888999999999766677889999999999998752   22222       


Q ss_pred             CCCCccCCCCcceEEEEECCCCC-EEEEecCCCcEEEEEccc-ceeeeeecCCccceEEEEEcCCCCcEEEEEeCCCeEE
Q 021247          149 LKPTDKSSSKKFVLSVAWSPDGR-RIACGSMDGTISVFDVTR-AKFLHHLEGHFMPVRSLVYSPVDPRVLFSASDDTHVH  226 (315)
Q Consensus       149 ~~~~~~~~~~~~i~~~~~~~~~~-~l~~~s~dg~i~i~d~~~-~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~  226 (315)
                            ..+...|++++|+|++. .|++|+.||.|++||+++ ...+..+..|...|.++.|+|.+..+|++++.|+.|+
T Consensus       274 ------~~~~~~v~~i~~~p~~~~~l~tg~~dg~v~vwd~~~~~~~~~~~~~h~~~v~~i~~sp~~~~~l~s~~~d~~i~  347 (430)
T 2xyi_A          274 ------DAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLH  347 (430)
T ss_dssp             ------ECCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTSCSEEEECCSSCEEEEEECSSCTTEEEEEETTSCCE
T ss_pred             ------ecCCCCeEEEEeCCCCCCEEEEEeCCCeEEEEeCCCCCCCeEEeecCCCCEEEEEECCCCCCEEEEEeCCCcEE
Confidence                  13455699999999887 688999999999999987 5567888889999999999997778899999999999


Q ss_pred             EEeCCC--------------CeeEEEeecccccEEEEEEcCCCC-eEEEEeCCCcEEEEecCcc
Q 021247          227 MYDAEG--------------KSLVTAMSGHASWVLSVDASPDGA-AITTGSSDRTVKLWDLNMR  275 (315)
Q Consensus       227 ~wd~~~--------------~~~~~~~~~~~~~i~~~~~~~~~~-~l~s~~~d~~i~iwd~~~~  275 (315)
                      +||+..              ..++....+|...|.+++|+|+++ +|++++.||.|++|++...
T Consensus       348 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s~dg~i~iw~~~~~  411 (430)
T 2xyi_A          348 VWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWIICSVSEDNIMQVWQMAEN  411 (430)
T ss_dssp             EEEGGGTTCCCCHHHHHHCCTTEEEECCCCSSCEEEEEECSSSTTEEEEEETTSEEEEEEECHH
T ss_pred             EEeCCCCccccCccccccCCcceEEEcCCCCCCceEEEECCCCCCEEEEEECCCCEEEeEcccc
Confidence            999875              256677788999999999999998 8999999999999999754

>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A

Probab=100.00  E-value=1.4e-35  Score=256.97  Aligned_cols=262  Identities=24%  Similarity=0.381  Sum_probs=209.7

Q ss_pred             hccccceEEEEEeecCCCCCcEEEEeeCCCcEEEEcCCCCcceeeccccccceEEEEeCCCCCEEEEeeCCCeEEEEECC
Q 021247           11 NAHEESVWAVTWVPATETRPALLLTGSLDETVKLWRPDDMQLERTNTGHCLGVVSVAAHPSGIIAASASLDSFVRVFDVD   90 (315)
Q Consensus        11 ~~h~~~v~~v~~~~~~~~~~~~l~sgs~d~~v~~w~~~~~~~~~~~~~h~~~v~~~~~~~~g~~l~s~~~d~~i~~w~~~   90 (315)
                      .+|.+.|++|+|+|+++    +|++|+.||+|++|+..+.+..+...+|...+.++++  ++.++++++.|+.+++||..
T Consensus       144 ~~~~~~V~sv~fspdg~----~lasgs~Dg~v~iWd~~~~~~~~~~~~h~~~v~~~s~--~~~~l~sgs~d~~i~~~d~~  217 (420)
T 4gga_A          144 EQPGEYISSVAWIKEGN----YLAVGTSSAEVQLWDVQQQKRLRNMTSHSARVGSLSW--NSYILSSGSRSGHIHHHDVR  217 (420)
T ss_dssp             CSTTCCEEEEEECTTSS----EEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEE--ETTEEEEEETTSEEEEEETT
T ss_pred             cCCCCcEEEEEECCCCC----EEEEEECCCeEEEEEcCCCcEEEEEeCCCCceEEEee--CCCEEEEEeCCCceeEeeec
Confidence            47888999999999775    7999999999999999999999999999999998887  46799999999999999988


Q ss_pred             CCc-eeEEeeCCcccEEEEEECCCCCeEEEEecCCCeEEEEecCCcceeeeecCCCCCCCCCCccCCCCcceEEEEECCC
Q 021247           91 TNA-SIATLEASPSEVWQMQFDPKGTTLAVAGGGSASVKLWDTATWNLIATLSIPRPEGLKPTDKSSSKKFVLSVAWSPD  169 (315)
Q Consensus        91 ~~~-~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~  169 (315)
                      ... .+..+..|...+..+.++|++..+ ++++.|+.+++||...++....         .......+...|.+++|+|.
T Consensus       218 ~~~~~~~~~~~h~~~~~~~~~~~~g~~l-~s~~~D~~v~i~~~~~~~~~~~---------~~~~~~~~~~~V~~~~~~p~  287 (420)
T 4gga_A          218 VAEHHVATLSGHSQEVCGLRWAPDGRHL-ASGGNDNLVNVWPSAPGEGGWV---------PLQTFTQHQGAVKAVAWCPW  287 (420)
T ss_dssp             SSSCEEEEEECCSSCEEEEEECTTSSEE-EEEETTSCEEEEESSCCSSCSC---------CSEEECCCSSCEEEEEECTT
T ss_pred             ccceeeEEecccccceeeeeecCCCCee-eeeeccccceEEeeccccccce---------eeeeecccCCceeeeeeCCC
Confidence            754 467788899999999999998865 6788999999999976542211         01112345567999999997


Q ss_pred             CC-EEEE--ecCCCcEEEEEcccceeeeeecCCccceEEEEEcCCCCcEEEEE-eCCCeEEEEeCCCCeeEEEeeccccc
Q 021247          170 GR-RIAC--GSMDGTISVFDVTRAKFLHHLEGHFMPVRSLVYSPVDPRVLFSA-SDDTHVHMYDAEGKSLVTAMSGHASW  245 (315)
Q Consensus       170 ~~-~l~~--~s~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~-~~d~~i~~wd~~~~~~~~~~~~~~~~  245 (315)
                      +. .+++  |+.|+.|++||+.+++....+..| ..+.++.|+|.+..+++++ +.|+.|++||..+++.+..+.+|.+.
T Consensus       288 ~~~~la~~~gs~D~~I~iwd~~t~~~~~~~~~~-~~v~~~~~~~~~~~lv~~sg~~d~~I~iwd~~~~~~v~~l~gH~~~  366 (420)
T 4gga_A          288 QSNVLATGGGTSDRHIRIWNVCSGACLSAVDAH-SQVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAELKGHTSR  366 (420)
T ss_dssp             CTTEEEEEECTTTCEEEEEETTTTEEEEEEECS-SCEEEEEEETTTTEEEEEECTTTCCEEEEETTTCCEEEEECCCSSC
T ss_pred             cccEEEEEeecCCCEEEEEeCCccccceeeccc-cceeeeeecCCCCeEEEEEecCCCEEEEEECCCCcEEEEEcCCCCC
Confidence            55 4443  568999999999999988887765 4678889998555444333 37999999999999999999999999


Q ss_pred             EEEEEEcCCCCeEEEEeCCCcEEEEecCccceehcccccccceE
Q 021247          246 VLSVDASPDGAAITTGSSDRTVKLWDLNMRAAMQSMTNHTDQVW  289 (315)
Q Consensus       246 i~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~  289 (315)
                      |++++|+|+|++|+||+.|++|++||+....+.+....+...+.
T Consensus       367 V~~l~~spdg~~l~S~s~D~tvriWdv~~~~~~~~~~~~~~~~~  410 (420)
T 4gga_A          367 VLSLTMSPDGATVASAAADETLRLWRCFELDPARRREREKASAA  410 (420)
T ss_dssp             EEEEEECTTSSCEEEEETTTEEEEECCSCSSCC-----------
T ss_pred             EEEEEEcCCCCEEEEEecCCeEEEEECCCCCccchhhhccCCcc
Confidence            99999999999999999999999999987666655555544433

>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}

Probab=100.00  E-value=9.7e-36  Score=256.13  Aligned_cols=297  Identities=16%  Similarity=0.226  Sum_probs=209.1

Q ss_pred             hccccceEEEEEeecCCCCCcEEEEeeCCCcEEEEcCCCCcceeeccccccceEEEEeCCC---CCEEEEeeCCCeEEEE
Q 021247           11 NAHEESVWAVTWVPATETRPALLLTGSLDETVKLWRPDDMQLERTNTGHCLGVVSVAAHPS---GIIAASASLDSFVRVF   87 (315)
Q Consensus        11 ~~h~~~v~~v~~~~~~~~~~~~l~sgs~d~~v~~w~~~~~~~~~~~~~h~~~v~~~~~~~~---g~~l~s~~~d~~i~~w   87 (315)
                      .+|...|++++|+|...   .+|++++.||.|++|+..+.+....+. +...+.++.+++.   +.++++++.|+.|++|
T Consensus        96 ~~~~~~v~~~~~~~~~~---~~l~s~~~d~~i~iwd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~  171 (408)
T 4a11_B           96 DVHRYSVETVQWYPHDT---GMFTSSSFDKTLKVWDTNTLQTADVFN-FEETVYSHHMSPVSTKHCLVAVGTRGPKVQLC  171 (408)
T ss_dssp             TCCSSCEEEEEECTTCT---TCEEEEETTSEEEEEETTTTEEEEEEE-CSSCEEEEEECSSCSSCCEEEEEESSSSEEEE
T ss_pred             ccCCCcEEEEEEccCCC---cEEEEEeCCCeEEEeeCCCCccceecc-CCCceeeeEeecCCCCCcEEEEEcCCCeEEEE
Confidence            36999999999999433   279999999999999998877666554 6678899999884   4599999999999999


Q ss_pred             ECCCCceeEEeeCCcccEEEEEECCCCCeEEEEecCCCeEEEEecCCcc-eeeeecCCCCCC--CCCCccCCCCcceEEE
Q 021247           88 DVDTNASIATLEASPSEVWQMQFDPKGTTLAVAGGGSASVKLWDTATWN-LIATLSIPRPEG--LKPTDKSSSKKFVLSV  164 (315)
Q Consensus        88 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~~d~~~~~-~~~~~~~~~~~~--~~~~~~~~~~~~i~~~  164 (315)
                      |+.++..+..+..|...|.+++|+|++..++++++.|+.|++||++..+ .+..+.......  ........+...|.++
T Consensus       172 d~~~~~~~~~~~~~~~~v~~~~~~~~~~~ll~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~  251 (408)
T 4a11_B          172 DLKSGSCSHILQGHRQEILAVSWSPRYDYILATASADSRVKLWDVRRASGCLITLDQHNGKKSQAVESANTAHNGKVNGL  251 (408)
T ss_dssp             ESSSSCCCEEECCCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTCSSCCSEECCTTTTCSCCCTTTSSCSCSSCEEEE
T ss_pred             eCCCcceeeeecCCCCcEEEEEECCCCCcEEEEEcCCCcEEEEECCCCCcccccccccccccceeeccccccccCceeEE
Confidence            9999998999999999999999999999877889999999999998765 233332111110  1111224566789999


Q ss_pred             EECCCCCEEEEecCCCcEEEEEcccceeeeeecCCc----cceEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCeeEEEee
Q 021247          165 AWSPDGRRIACGSMDGTISVFDVTRAKFLHHLEGHF----MPVRSLVYSPVDPRVLFSASDDTHVHMYDAEGKSLVTAMS  240 (315)
Q Consensus       165 ~~~~~~~~l~~~s~dg~i~i~d~~~~~~~~~~~~~~----~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~  240 (315)
                      +|+|++++|++++.|+.|++||+.+++.......+.    .....+.+.......++.++.++.|++||..+++.+..+.
T Consensus       252 ~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~  331 (408)
T 4a11_B          252 CFTSDGLHLLTVGTDNRMRLWNSSNGENTLVNYGKVCNNSKKGLKFTVSCGCSSEFVFVPYGSTIAVYTVYSGEQITMLK  331 (408)
T ss_dssp             EECTTSSEEEEEETTSCEEEEETTTCCBCCCCCCCCCCCCSSCCCCEECCSSSSCEEEEEETTEEEEEETTTCCEEEEEC
T ss_pred             EEcCCCCEEEEecCCCeEEEEECCCCccceeccccccccccccceeEEecCCCceEEEEecCCEEEEEECcCCcceeeec
Confidence            999999999999999999999998877654433221    1111222333345567788889999999999999999999


Q ss_pred             cccccEEEEEEcCCCCeEEEEeCCCcEEEEecCccceehcccccccceEEEEEeeC-CCEEEEEeCCCcEEEeec
Q 021247          241 GHASWVLSVDASPDGAAITTGSSDRTVKLWDLNMRAAMQSMTNHTDQVWGVSFRPL-GGRVVSVSDDKSISLYEY  314 (315)
Q Consensus       241 ~~~~~i~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~-~~~l~s~~~d~~i~i~~~  314 (315)
                      +|...|.+++|+|++++|++++.||.|++||++.++.+.....+..   ...+.|. ...+.+.+.|+.+++|+.
T Consensus       332 ~~~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~W~~  403 (408)
T 4a11_B          332 GHYKTVDCCVFQSNFQELYSGSRDCNILAWVPSLYEPVPDDDETTT---KSQLNPAFEDAWSSSDEEGGTSAWSH  403 (408)
T ss_dssp             CCSSCEEEEEEETTTTEEEEEETTSCEEEEEECC-----------------------------------------
T ss_pred             cCCCeEEEEEEcCCCCEEEEECCCCeEEEEeCCCCCccCCCCceEe---ccccccccceeecccCccCceeecCC
Confidence            9999999999999999999999999999999998877665443321   2233433 334567888999999975

>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}

Probab=100.00  E-value=7.8e-37  Score=282.72  Aligned_cols=250  Identities=22%  Similarity=0.381  Sum_probs=210.0

Q ss_pred             eeccccccceEEEEeCCCCCEEEEeeCCCeEEEEECC--CCceeEEeeCCcccEEEEEECCC--CCeEEEEecCCCeEEE
Q 021247           54 RTNTGHCLGVVSVAAHPSGIIAASASLDSFVRVFDVD--TNASIATLEASPSEVWQMQFDPK--GTTLAVAGGGSASVKL  129 (315)
Q Consensus        54 ~~~~~h~~~v~~~~~~~~g~~l~s~~~d~~i~~w~~~--~~~~~~~~~~~~~~v~~~~~~~~--~~~~~~~~~~d~~i~~  129 (315)
                      ..+.+|..+|++++|+|+|.++++++.||+|++||+.  +...+..+..|..+|.+++|+|+  ++ ++++++.|++|++
T Consensus         3 ~~l~gH~~~V~~l~~s~dg~~latg~~dg~I~vwd~~~~~~~~~~~l~~h~~~V~~l~~s~~~~~~-~l~s~s~Dg~I~v   81 (753)
T 3jro_A            3 VIANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGT-ILASCSYDGKVLI   81 (753)
T ss_dssp             -----CCCCEEEECCCSSSCCEEEEETTTEEEEEEEETTEEEEEEEECCCSSCEEEEEECCTTSCS-EEEEEETTSCEEE
T ss_pred             eecccCcceeEEEEECCCCCeEEEEECCCcEEEEecCCCCCccceeccCCcCceEEEEecCCCCCC-EEEEEeCCCeEEE
Confidence            3467899999999999999999999999999999998  44567788889999999999987  55 5578889999999


Q ss_pred             EecCCcceeeeecCCCCCCCCCCccCCCCcceEEEEECCC--CCEEEEecCCCcEEEEEcccce--eeeeecCCccceEE
Q 021247          130 WDTATWNLIATLSIPRPEGLKPTDKSSSKKFVLSVAWSPD--GRRIACGSMDGTISVFDVTRAK--FLHHLEGHFMPVRS  205 (315)
Q Consensus       130 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~--~~~l~~~s~dg~i~i~d~~~~~--~~~~~~~~~~~v~~  205 (315)
                      ||+.+++.......           ..|...|.+++|+|+  ++.+++|+.||.|++||++++.  ....+.+|...|.+
T Consensus        82 wd~~~~~~~~~~~~-----------~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~vwdl~~~~~~~~~~~~~~~~~v~~  150 (753)
T 3jro_A           82 WKEENGRWSQIAVH-----------AVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNS  150 (753)
T ss_dssp             EEEETTEEEEEEEE-----------CCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCSSSCCCCEEEECCSSCEEE
T ss_pred             EECCCCcccccccc-----------cCCCCCeEEEEECCCCCCCEEEEEeCCCcEEEEEeecCCCcceeEeecCCCceEE
Confidence            99988652222111           234556999999999  9999999999999999998763  34556789999999


Q ss_pred             EEEcCC------------CCcEEEEEeCCCeEEEEeCCCC----eeEEEeecccccEEEEEEcCC---CCeEEEEeCCCc
Q 021247          206 LVYSPV------------DPRVLFSASDDTHVHMYDAEGK----SLVTAMSGHASWVLSVDASPD---GAAITTGSSDRT  266 (315)
Q Consensus       206 ~~~~~~------------~~~~l~s~~~d~~i~~wd~~~~----~~~~~~~~~~~~i~~~~~~~~---~~~l~s~~~d~~  266 (315)
                      +.|+|.            ++.++++++.|+.|++||++.+    .....+.+|...|.+++|+|+   +.+|++++.||.
T Consensus       151 l~~~p~~~~~~~~~~~~~d~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~~~l~s~s~Dg~  230 (753)
T 3jro_A          151 ASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRT  230 (753)
T ss_dssp             EEECCCC---------CGGGCCEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEESSSC
T ss_pred             EEecCcccccccccccCCCCCEEEEEECCCeEEEEeccCCcccceeeeeecCCCCcEEEEEeccCCCCCCEEEEEecCCE
Confidence            999995            5789999999999999998765    556677899999999999999   899999999999


Q ss_pred             EEEEecCccc-----eehcccccccceEEEEEeeCCCEEEEEeCCCcEEEeecC
Q 021247          267 VKLWDLNMRA-----AMQSMTNHTDQVWGVSFRPLGGRVVSVSDDKSISLYEYS  315 (315)
Q Consensus       267 i~iwd~~~~~-----~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~i~i~~~~  315 (315)
                      |++||++.+.     .......|...|++++|+|+|.+|++++.||.|++|++.
T Consensus       231 I~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~Dg~I~vwd~~  284 (753)
T 3jro_A          231 CIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKEN  284 (753)
T ss_dssp             EEEEEESSSSSCCBCCBSSSSCCSSCCCCEEECTTTCCEEEECSSSCEECCBCC
T ss_pred             EEEecCCCCCCcceeEEeccCCCCCceEEEEEcCCCCEEEEEcCCCEEEEEecC
Confidence            9999998763     333445688899999999999999999999999999863

>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=100.00  E-value=2.7e-37  Score=268.01  Aligned_cols=267  Identities=12%  Similarity=0.134  Sum_probs=212.4

Q ss_pred             hccccceEEEEEeecCCCCCcEEEEeeCCCcEEEEcCCCCcceeeccccccceEEEEeCCCCCEEEEeeCCCeEEEEECC
Q 021247           11 NAHEESVWAVTWVPATETRPALLLTGSLDETVKLWRPDDMQLERTNTGHCLGVVSVAAHPSGIIAASASLDSFVRVFDVD   90 (315)
Q Consensus        11 ~~h~~~v~~v~~~~~~~~~~~~l~sgs~d~~v~~w~~~~~~~~~~~~~h~~~v~~~~~~~~g~~l~s~~~d~~i~~w~~~   90 (315)
                      +.-...|.+|+|+|++.    ++||||.|++|+  ++...   +.+.+|...|.+++|+|+|       .++.+++|+.+
T Consensus        12 ~~~~~~v~sv~~SpDG~----~iASas~D~TV~--d~~~~---~~l~gh~~~v~~V~FsPdg-------~~~~~~~~~~~   75 (588)
T 2j04_A           12 KEFEDWKNNLTWARDGT----LYLTTFPDISIG--QPKYA---KDINCNSKNLFHVKEFPLE-------FENKLDFELAQ   75 (588)
T ss_dssp             CCCSSSSCCEEECTTSC----EEEECSSSEEEE--EECCC---SCCSSBGGGTEEEEEECCC-------CCCTTTTSCCC
T ss_pred             hHhhccEEEEEECCCCC----EEEEEcCCceee--ccccc---ceecCCCccEEEEEECCCC-------CcceEEEEeCC
Confidence            34567999999999986    799999999999  64444   4457999999999999998       56666666654


Q ss_pred             CCceeEEeeCCcccEEEEEECCCCCeEEEEecCCCeEEEEecCCcceeeeecCCCCCCCCCCccCCCCcceEEEEECCCC
Q 021247           91 TNASIATLEASPSEVWQMQFDPKGTTLAVAGGGSASVKLWDTATWNLIATLSIPRPEGLKPTDKSSSKKFVLSVAWSPDG  170 (315)
Q Consensus        91 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~  170 (315)
                      ....+ .+ .+...|.+++|+|+|..+ ++++.||+|++||...  .+..+. +..        ......+.+++|+|+|
T Consensus        76 ~~~~~-~~-~~~~~V~~vawSPdG~~L-As~s~dg~V~iwd~~~--~l~~l~-~~~--------~~~~~sv~svafSPDG  141 (588)
T 2j04_A           76 QNGLL-NS-QPVCYPRVCKPSPIDDWM-AVLSNNGNVSVFKDNK--MLTNLD-SKG--------NLSSRTYHCFEWNPIE  141 (588)
T ss_dssp             SSCSS-TT-SCSCCEEEEEECSSSSCE-EEEETTSCEEEEETTE--EEEECC-CSS--------CSTTTCEEEEEECSSS
T ss_pred             CceEe-ec-CCCCcEEEEEECCCCCEE-EEEeCCCcEEEEeCCc--eeeecc-CCC--------ccccccEEEEEEcCCC
Confidence            33222 22 336789999999999976 5778999999999643  333332 111        0012248899999999


Q ss_pred             CEEEEecCCCcEEEEEccccee-------eeee----cCCccceEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCee---E
Q 021247          171 RRIACGSMDGTISVFDVTRAKF-------LHHL----EGHFMPVRSLVYSPVDPRVLFSASDDTHVHMYDAEGKSL---V  236 (315)
Q Consensus       171 ~~l~~~s~dg~i~i~d~~~~~~-------~~~~----~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~---~  236 (315)
                      ++|++|+.||+|++||+.++..       +..+    .+|...|.+++|+|+ +  +++++.|+++++||..++..   .
T Consensus       142 ~~LAsgs~DGtVkIWd~~~~~l~~~~~i~l~ti~~~~~gh~~~V~sVawSPd-g--Laass~D~tVrlWd~~~~~~~~~~  218 (588)
T 2j04_A          142 SSIVVGNEDGELQFFSIRKNSENTPEFYFESSIRLSDAGSKDWVTHIVWYED-V--LVAALSNNSVFSMTVSASSHQPVS  218 (588)
T ss_dssp             SCEEEEETTSEEEEEECCCCTTTCCCCEEEEEEECSCTTCCCCEEEEEEETT-E--EEEEETTCCEEEECCCSSSSCCCE
T ss_pred             CEEEEEcCCCEEEEEECCCCccccccceeeeeeecccccccccEEEEEEcCC-c--EEEEeCCCeEEEEECCCCccccce
Confidence            9999999999999999987752       4555    667889999999994 4  88999999999999987763   3


Q ss_pred             EEe-ecccccEEEEEEcCCCCeEEEEeCCCcEEEEecCccceehcccccccceEEEEE--eeCCCEEEEEeCCCcEEEee
Q 021247          237 TAM-SGHASWVLSVDASPDGAAITTGSSDRTVKLWDLNMRAAMQSMTNHTDQVWGVSF--RPLGGRVVSVSDDKSISLYE  313 (315)
Q Consensus       237 ~~~-~~~~~~i~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~--s~~~~~l~s~~~d~~i~i~~  313 (315)
                      ..+ .+|...|.+++|+  ++.|++++ +++|++||+..++......+|.+.++.++|  +|++..|++++.||+ +||.
T Consensus       219 ~tL~~~h~~~V~svaFs--g~~LASa~-~~tIkLWd~~~~~~~~~~~gh~~~V~~va~~~s~d~~~La~a~edG~-klw~  294 (588)
T 2j04_A          219 RMIQNASRRKITDLKIV--DYKVVLTC-PGYVHKIDLKNYSISSLKTGSLENFHIIPLNHEKESTILLMSNKTSY-KVLL  294 (588)
T ss_dssp             EEEECCCSSCCCCEEEE--TTEEEEEC-SSEEEEEETTTTEEEEEECSCCSCCCEEEETTCSSCEEEEECSSCEE-EEEE
T ss_pred             eeecccccCcEEEEEEE--CCEEEEEe-CCeEEEEECCCCeEEEEEcCCCceEEEEEeeeCCCCCEEEEEcCCCC-EEEe
Confidence            455 4788899999999  58889887 699999999987663333389999999999  999999999999999 9998


Q ss_pred             c
Q 021247          314 Y  314 (315)
Q Consensus       314 ~  314 (315)
                      +
T Consensus       295 ~  295 (588)
T 2j04_A          295 E  295 (588)
T ss_dssp             S
T ss_pred             e
Confidence            6

>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}

Probab=100.00  E-value=1.8e-35  Score=254.66  Aligned_cols=248  Identities=24%  Similarity=0.378  Sum_probs=207.1

Q ss_pred             ccccceEEEEEeecCCCCCcEEEEeeCCCcEEEEcCCCCcceeeccccccceEEEEeCCCCCEEEEeeCCCeEEEEECC-
Q 021247           12 AHEESVWAVTWVPATETRPALLLTGSLDETVKLWRPDDMQLERTNTGHCLGVVSVAAHPSGIIAASASLDSFVRVFDVD-   90 (315)
Q Consensus        12 ~h~~~v~~v~~~~~~~~~~~~l~sgs~d~~v~~w~~~~~~~~~~~~~h~~~v~~~~~~~~g~~l~s~~~d~~i~~w~~~-   90 (315)
                      .|...|++++|+|.+.    +|++|+.||.|++|+..+.+....+.+|...|.++++  ++.++++++.|+.|++||+. 
T Consensus       132 ~~~~~v~~v~~s~~~~----~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~dg~i~i~d~~~  205 (401)
T 4aez_A          132 DESTYVASVKWSHDGS----FLSVGLGNGLVDIYDVESQTKLRTMAGHQARVGCLSW--NRHVLSSGSRSGAIHHHDVRI  205 (401)
T ss_dssp             CTTCCEEEEEECTTSS----EEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEE--ETTEEEEEETTSEEEEEETTS
T ss_pred             CCCCCEEEEEECCCCC----EEEEECCCCeEEEEECcCCeEEEEecCCCCceEEEEE--CCCEEEEEcCCCCEEEEeccc
Confidence            4899999999999664    7999999999999999998888888899999999999  56799999999999999999 


Q ss_pred             CCceeEEeeCCcccEEEEEECCCCCeEEEEecCCCeEEEEecCCcceeeeecCCCCCCCCCCccCCCCcceEEEEECCCC
Q 021247           91 TNASIATLEASPSEVWQMQFDPKGTTLAVAGGGSASVKLWDTATWNLIATLSIPRPEGLKPTDKSSSKKFVLSVAWSPDG  170 (315)
Q Consensus        91 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~  170 (315)
                      ....+..+..|...|.+++|+|+++.+ ++++.|+.|++||+++.+.+..+.             .+...|.+++|+|++
T Consensus       206 ~~~~~~~~~~~~~~v~~~~~~~~~~~l-~s~~~d~~v~iwd~~~~~~~~~~~-------------~~~~~v~~~~~~p~~  271 (401)
T 4aez_A          206 ANHQIGTLQGHSSEVCGLAWRSDGLQL-ASGGNDNVVQIWDARSSIPKFTKT-------------NHNAAVKAVAWCPWQ  271 (401)
T ss_dssp             SSCEEEEEECCSSCEEEEEECTTSSEE-EEEETTSCEEEEETTCSSEEEEEC-------------CCSSCCCEEEECTTS
T ss_pred             CcceeeEEcCCCCCeeEEEEcCCCCEE-EEEeCCCeEEEccCCCCCccEEec-------------CCcceEEEEEECCCC
Confidence            456677888899999999999988754 678899999999999877665553             234458999999976


Q ss_pred             C-EEEEec--CCCcEEEEEcccceeeeeecCCccceEEEEEcCCCCcEEEE--EeCCCeEEEEeCCCCeeEE--Eeeccc
Q 021247          171 R-RIACGS--MDGTISVFDVTRAKFLHHLEGHFMPVRSLVYSPVDPRVLFS--ASDDTHVHMYDAEGKSLVT--AMSGHA  243 (315)
Q Consensus       171 ~-~l~~~s--~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s--~~~d~~i~~wd~~~~~~~~--~~~~~~  243 (315)
                      . .+++++  .|+.|++||+.+++.+..+. +...+.++.|+| +++++++  |+.|+.|++||+..+....  .+.+|.
T Consensus       272 ~~ll~~~~gs~d~~i~i~d~~~~~~~~~~~-~~~~v~~~~~s~-~~~~l~~~~g~~dg~i~v~~~~~~~~~~~~~~~~h~  349 (401)
T 4aez_A          272 SNLLATGGGTMDKQIHFWNAATGARVNTVD-AGSQVTSLIWSP-HSKEIMSTHGFPDNNLSIWSYSSSGLTKQVDIPAHD  349 (401)
T ss_dssp             TTEEEEECCTTTCEEEEEETTTCCEEEEEE-CSSCEEEEEECS-SSSEEEEEECTTTCEEEEEEEETTEEEEEEEEECCS
T ss_pred             CCEEEEecCCCCCEEEEEECCCCCEEEEEe-CCCcEEEEEECC-CCCeEEEEeecCCCcEEEEecCCccceeEEEecCCC
Confidence            5 555554  79999999999998887776 556899999999 5566766  4489999999998865443  467899


Q ss_pred             ccEEEEEEcCCCCeEEEEeCCCcEEEEecCccceehcc
Q 021247          244 SWVLSVDASPDGAAITTGSSDRTVKLWDLNMRAAMQSM  281 (315)
Q Consensus       244 ~~i~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~  281 (315)
                      ..|.+++|+|++++|++++.||.|++|++..++.+...
T Consensus       350 ~~v~~~~~s~dg~~l~s~~~dg~i~iw~~~~~~~~~~~  387 (401)
T 4aez_A          350 TRVLYSALSPDGRILSTAASDENLKFWRVYDGDHVKRP  387 (401)
T ss_dssp             SCCCEEEECTTSSEEEEECTTSEEEEEECCC-------
T ss_pred             CCEEEEEECCCCCEEEEEeCCCcEEEEECCCCcccccc
Confidence            99999999999999999999999999999988766543

>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*

Probab=100.00  E-value=1.3e-36  Score=264.66  Aligned_cols=250  Identities=17%  Similarity=0.166  Sum_probs=196.8

Q ss_pred             eeeccccccceEEEEeCC-CCCEEEEeeCCCeEEEEECCCCceeE--EeeCCcccEEEEEECCCCCeEEEEecCCCeEEE
Q 021247           53 ERTNTGHCLGVVSVAAHP-SGIIAASASLDSFVRVFDVDTNASIA--TLEASPSEVWQMQFDPKGTTLAVAGGGSASVKL  129 (315)
Q Consensus        53 ~~~~~~h~~~v~~~~~~~-~g~~l~s~~~d~~i~~w~~~~~~~~~--~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~  129 (315)
                      .....+|...|++|+|+| ++.+|++|+.||+|+|||+.++....  .+..|...|.+++|+|.+..++++++.|++|++
T Consensus       112 ~~~~~~~~~~V~~l~~~P~~~~~lasGs~dg~i~lWd~~~~~~~~~~~~~gH~~~V~~l~f~p~~~~~l~s~s~D~~v~i  191 (435)
T 4e54_B          112 LQKAAPFDRRATSLAWHPTHPSTVAVGSKGGDIMLWNFGIKDKPTFIKGIGAGGSITGLKFNPLNTNQFYASSMEGTTRL  191 (435)
T ss_dssp             CCEEEECSSCEEEEEECSSCTTCEEEEETTSCEEEECSSCCSCCEEECCCSSSCCCCEEEECSSCTTEEEEECSSSCEEE
T ss_pred             cccCCCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEEECCCCCceeEEEccCCCCCEEEEEEeCCCCCEEEEEeCCCEEEE
Confidence            334456788899999999 46799999999999999998776443  445788999999999965546688999999999


Q ss_pred             EecCCcceeeeecCCCCCCCCCCccCCCCcceEEEEECCCCCEEEEecCCCcEEEEEcccceeeeeecCCccceEEEEEc
Q 021247          130 WDTATWNLIATLSIPRPEGLKPTDKSSSKKFVLSVAWSPDGRRIACGSMDGTISVFDVTRAKFLHHLEGHFMPVRSLVYS  209 (315)
Q Consensus       130 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~s~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~  209 (315)
                      ||+++........ .          ......+.+++|+|++++|++|+.||.|++||++ ++.+..+.+|...|.+++|+
T Consensus       192 wd~~~~~~~~~~~-~----------~~~~~~~~~~~~~~~~~~l~~g~~dg~i~~wd~~-~~~~~~~~~h~~~v~~v~~~  259 (435)
T 4e54_B          192 QDFKGNILRVFAS-S----------DTINIWFCSLDVSASSRMVVTGDNVGNVILLNMD-GKELWNLRMHKKKVTHVALN  259 (435)
T ss_dssp             EETTSCEEEEEEC-C----------SSCSCCCCCEEEETTTTEEEEECSSSBEEEEESS-SCBCCCSBCCSSCEEEEEEC
T ss_pred             eeccCCceeEEec-c----------CCCCccEEEEEECCCCCEEEEEeCCCcEeeeccC-cceeEEEecccceEEeeeec
Confidence            9997643322221 1          1123347789999999999999999999999986 45667788999999999999


Q ss_pred             CCCCcEEEEEeCCCeEEEEeCCCCeeEE---EeecccccEEEEEEcCCCCeEEEEeCCCcEEEEecCccceehccccccc
Q 021247          210 PVDPRVLFSASDDTHVHMYDAEGKSLVT---AMSGHASWVLSVDASPDGAAITTGSSDRTVKLWDLNMRAAMQSMTNHTD  286 (315)
Q Consensus       210 ~~~~~~l~s~~~d~~i~~wd~~~~~~~~---~~~~~~~~i~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~  286 (315)
                      |.+..++++++.|+.|++||++......   ...+|...|++++|+|++++|++++.|+.|++||+..++....+..|..
T Consensus       260 p~~~~~~~s~s~d~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~spdg~~l~s~~~D~~i~iwd~~~~~~~~~~~~~~~  339 (435)
T 4e54_B          260 PCCDWFLATASVDQTVKIWDLRQVRGKASFLYSLPHRHPVNAACFSPDGARLLTTDQKSEIRVYSASQWDCPLGLIPHPH  339 (435)
T ss_dssp             TTCSSEEEEEETTSBCCEEETTTCCSSSCCSBCCBCSSCEEECCBCTTSSEEEEEESSSCEEEEESSSSSSEEEECCCCC
T ss_pred             CCCceEEEEecCcceeeEEecccccccceEEEeeeccccccceeECCCCCeeEEEcCCCEEEEEECCCCccceEEecccc
Confidence            9877899999999999999998654332   3357899999999999999999999999999999998776555544432


Q ss_pred             ------ceEEEEEeeCCCEEEEEe------------CCCcEEEeec
Q 021247          287 ------QVWGVSFRPLGGRVVSVS------------DDKSISLYEY  314 (315)
Q Consensus       287 ------~v~~~~~s~~~~~l~s~~------------~d~~i~i~~~  314 (315)
                            .+..+.|+|++..+++++            +++.|++||.
T Consensus       340 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~i~iwd~  385 (435)
T 4e54_B          340 RHFQHLTPIKAAWHPRYNLIVVGRYPDPNFKSCTPYELRTIDVFDG  385 (435)
T ss_dssp             CCCSSSCCCBCEECSSSSCEEEECCCCTTSCCSSTTCCCCEEEECS
T ss_pred             cccccceeEEEEEcCCCCEEEEEEcCCCCeEEEEecCCCEEEEEEC
Confidence                  233456666666665543            3468999985

>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}

Probab=100.00  E-value=3.6e-36  Score=253.77  Aligned_cols=259  Identities=13%  Similarity=0.070  Sum_probs=202.3

Q ss_pred             cEEEEeeCCCcEEEEcCCCCcceeeccccccceEEEEeCCCCCEEEEeeCCCeEEEEECC---------CCceeEEee-C
Q 021247           31 ALLLTGSLDETVKLWRPDDMQLERTNTGHCLGVVSVAAHPSGIIAASASLDSFVRVFDVD---------TNASIATLE-A  100 (315)
Q Consensus        31 ~~l~sgs~d~~v~~w~~~~~~~~~~~~~h~~~v~~~~~~~~g~~l~s~~~d~~i~~w~~~---------~~~~~~~~~-~  100 (315)
                      .+|++|+.||+|++||..+.+....+.  ...|.++.++|+   +++++.|++|++|+..         +++.+..+. .
T Consensus        49 ~~l~sg~~Dg~v~iwd~~~~~~~~~~~--~~~v~~~~~~~~---~~s~s~D~~i~~w~~~~~~~~~~~~~~~~~~~~~~~  123 (343)
T 3lrv_A           49 WVCMCRCEDGALHFTQLKDSKTITTIT--TPNPRTGGEHPA---IISRGPCNRLLLLYPGNQITILDSKTNKVLREIEVD  123 (343)
T ss_dssp             EEEEEEEETTEEEEEEESSSSCEEEEE--EECCCTTCCCCS---EEEECSTTEEEEEETTTEEEEEETTTCCEEEEEECC
T ss_pred             CEEEEECCCCcEEEEECCCCcEEEEEe--cCCceeeeeCCc---eEEecCCCeEEEEEccCceEEeecCCcceeEEeecC
Confidence            479999999999999998887766554  467788888888   8999999999999765         444444443 4


Q ss_pred             CcccEEEEEECC--CCCeEEEEecCCCeEEEEecCCcceeeeecCCCCCCCCCCccCCCCcceEEEEECCCCCEEEEecC
Q 021247          101 SPSEVWQMQFDP--KGTTLAVAGGGSASVKLWDTATWNLIATLSIPRPEGLKPTDKSSSKKFVLSVAWSPDGRRIACGSM  178 (315)
Q Consensus       101 ~~~~v~~~~~~~--~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~s~  178 (315)
                      |..+|.+++|+|  +++. +++++.|++|++||+++++.......            .+...+.+++|+|++.+|++|+.
T Consensus       124 ~~~~v~~~~~~~~~~~~~-l~s~s~dg~i~~wd~~~~~~~~~~~~------------~~~~~i~~~~~~pdg~~lasg~~  190 (343)
T 3lrv_A          124 SANEIIYMYGHNEVNTEY-FIWADNRGTIGFQSYEDDSQYIVHSA------------KSDVEYSSGVLHKDSLLLALYSP  190 (343)
T ss_dssp             CSSCEEEEECCC---CCE-EEEEETTCCEEEEESSSSCEEEEECC------------CSSCCCCEEEECTTSCEEEEECT
T ss_pred             CCCCEEEEEcCCCCCCCE-EEEEeCCCcEEEEECCCCcEEEEEec------------CCCCceEEEEECCCCCEEEEEcC
Confidence            557899999999  8775 46788999999999998877544321            12234889999999999999999


Q ss_pred             CCcEEEEEcccceee-eeecC-CccceEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCeeEEEeec---ccccEE--EEEE
Q 021247          179 DGTISVFDVTRAKFL-HHLEG-HFMPVRSLVYSPVDPRVLFSASDDTHVHMYDAEGKSLVTAMSG---HASWVL--SVDA  251 (315)
Q Consensus       179 dg~i~i~d~~~~~~~-~~~~~-~~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~---~~~~i~--~~~~  251 (315)
                      ||.|++||+++++.. ..+.. |..+|.+++|+| ++.+|++++++ .|++||++..+.+..+..   |...+.  +++|
T Consensus       191 dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~fs~-~g~~l~s~~~~-~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~  268 (343)
T 3lrv_A          191 DGILDVYNLSSPDQASSRFPVDEEAKIKEVKFAD-NGYWMVVECDQ-TVVCFDLRKDVGTLAYPTYTIPEFKTGTVTYDI  268 (343)
T ss_dssp             TSCEEEEESSCTTSCCEECCCCTTSCEEEEEECT-TSSEEEEEESS-BEEEEETTSSTTCBSSCCCBC-----CCEEEEE
T ss_pred             CCEEEEEECCCCCCCccEEeccCCCCEEEEEEeC-CCCEEEEEeCC-eEEEEEcCCCCcceeecccccccccccceEEEE
Confidence            999999999998877 77787 999999999999 67889999855 999999988765443332   333333  6999


Q ss_pred             cCCCCeEEEEeC-CCcEEEEecCccceehcccccccceEEEEEee---CCCEEEEEeCCCcEEEee
Q 021247          252 SPDGAAITTGSS-DRTVKLWDLNMRAAMQSMTNHTDQVWGVSFRP---LGGRVVSVSDDKSISLYE  313 (315)
Q Consensus       252 ~~~~~~l~s~~~-d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~---~~~~l~s~~~d~~i~i~~  313 (315)
                      +|++++|++++. |+.|++|++......-..    .++..+.|+|   ++..+++++.|+.+.++-
T Consensus       269 ~~~g~~l~~~s~~d~~i~v~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~l~~~~~d~~~~~~~  330 (343)
T 3lrv_A          269 DDSGKNMIAYSNESNSLTIYKFDKKTKNWTK----DEESALCLQSDTADFTDMDVVCGDGGIAAIL  330 (343)
T ss_dssp             CTTSSEEEEEETTTTEEEEEEECTTTCSEEE----EEEEECCC----CCCCEEEEEEETTEEEEEE
T ss_pred             CCCCCEEEEecCCCCcEEEEEEcccccceEe----cCceeEecCccccccceeEEEecCCceEEEE
Confidence            999999999998 999999999654322111    5677888888   888899999999888764

>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}

Probab=100.00  E-value=5.8e-37  Score=283.55  Aligned_cols=252  Identities=23%  Similarity=0.296  Sum_probs=210.4

Q ss_pred             hhhhhccccceEEEEEeecCCCCCcEEEEeeCCCcEEEEcCC--CCcceeeccccccceEEEEeCCC--CCEEEEeeCCC
Q 021247            7 KSVENAHEESVWAVTWVPATETRPALLLTGSLDETVKLWRPD--DMQLERTNTGHCLGVVSVAAHPS--GIIAASASLDS   82 (315)
Q Consensus         7 ~~~~~~h~~~v~~v~~~~~~~~~~~~l~sgs~d~~v~~w~~~--~~~~~~~~~~h~~~v~~~~~~~~--g~~l~s~~~d~   82 (315)
                      ..+..+|.+.|++++|+|.+.    +|++|+.||.|++|+..  +.+....+.+|..+|.+++|+|+  +.++++++.||
T Consensus         2 ~~~l~gH~~~V~~l~~s~dg~----~latg~~dg~I~vwd~~~~~~~~~~~l~~h~~~V~~l~~s~~~~~~~l~s~s~Dg   77 (753)
T 3jro_A            2 VVIANAHNELIHDAVLDYYGK----RLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDG   77 (753)
T ss_dssp             ------CCCCEEEECCCSSSC----CEEEEETTTEEEEEEEETTEEEEEEEECCCSSCEEEEEECCTTSCSEEEEEETTS
T ss_pred             eeecccCcceeEEEEECCCCC----eEEEEECCCcEEEEecCCCCCccceeccCCcCceEEEEecCCCCCCEEEEEeCCC
Confidence            456789999999999999765    69999999999999986  44566678899999999999988  99999999999


Q ss_pred             eEEEEECCCCc--eeEEeeCCcccEEEEEECCC--CCeEEEEecCCCeEEEEecCCcceeeeecCCCCCCCCCCccCCCC
Q 021247           83 FVRVFDVDTNA--SIATLEASPSEVWQMQFDPK--GTTLAVAGGGSASVKLWDTATWNLIATLSIPRPEGLKPTDKSSSK  158 (315)
Q Consensus        83 ~i~~w~~~~~~--~~~~~~~~~~~v~~~~~~~~--~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~  158 (315)
                      .|++||+.++.  .+..+..|...|.+++|+|+  ++. +++++.|+.|++||+++.+......           ...+.
T Consensus        78 ~I~vwd~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~-l~sgs~dg~I~vwdl~~~~~~~~~~-----------~~~~~  145 (753)
T 3jro_A           78 KVLIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPL-LLVASSDGKVSVVEFKENGTTSPII-----------IDAHA  145 (753)
T ss_dssp             CEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSE-EEEEETTSEEEEEECCSSSCCCCEE-----------EECCS
T ss_pred             eEEEEECCCCcccccccccCCCCCeEEEEECCCCCCCE-EEEEeCCCcEEEEEeecCCCcceeE-----------eecCC
Confidence            99999999886  66777889999999999998  664 5778899999999998753322211           12345


Q ss_pred             cceEEEEECC-------------CCCEEEEecCCCcEEEEEcccc----eeeeeecCCccceEEEEEcCCC--CcEEEEE
Q 021247          159 KFVLSVAWSP-------------DGRRIACGSMDGTISVFDVTRA----KFLHHLEGHFMPVRSLVYSPVD--PRVLFSA  219 (315)
Q Consensus       159 ~~i~~~~~~~-------------~~~~l~~~s~dg~i~i~d~~~~----~~~~~~~~~~~~v~~~~~~~~~--~~~l~s~  219 (315)
                      ..|.+++|+|             ++++|++|+.||.|++||++++    .....+.+|..+|.+++|+|.+  +.+++++
T Consensus       146 ~~v~~l~~~p~~~~~~~~~~~~~d~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~~~l~s~  225 (753)
T 3jro_A          146 IGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASV  225 (753)
T ss_dssp             SCEEEEEECCCC---------CGGGCCEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEE
T ss_pred             CceEEEEecCcccccccccccCCCCCEEEEEECCCeEEEEeccCCcccceeeeeecCCCCcEEEEEeccCCCCCCEEEEE
Confidence            5699999999             5899999999999999999876    5567788999999999999954  8899999


Q ss_pred             eCCCeEEEEeCCCCe-----eEEEeecccccEEEEEEcCCCCeEEEEeCCCcEEEEecCc
Q 021247          220 SDDTHVHMYDAEGKS-----LVTAMSGHASWVLSVDASPDGAAITTGSSDRTVKLWDLNM  274 (315)
Q Consensus       220 ~~d~~i~~wd~~~~~-----~~~~~~~~~~~i~~~~~~~~~~~l~s~~~d~~i~iwd~~~  274 (315)
                      +.|+.|++||.+.+.     .......|...|++++|+|++++|++|+.||.|++|+++.
T Consensus       226 s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~Dg~I~vwd~~~  285 (753)
T 3jro_A          226 SQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKENL  285 (753)
T ss_dssp             ESSSCEEEEEESSSSSCCBCCBSSSSCCSSCCCCEEECTTTCCEEEECSSSCEECCBCCS
T ss_pred             ecCCEEEEecCCCCCCcceeEEeccCCCCCceEEEEEcCCCCEEEEEcCCCEEEEEecCC
Confidence            999999999988753     2223345888999999999999999999999999999874

>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=100.00  E-value=4.3e-37  Score=271.65  Aligned_cols=240  Identities=12%  Similarity=0.128  Sum_probs=184.0

Q ss_pred             CCCCCEEEEeeCCCeEEEEECCCCcee----EEeeCCcccEEEEEECCCC-----CeEEEEecCCCeEEEEecCCcceee
Q 021247           69 HPSGIIAASASLDSFVRVFDVDTNASI----ATLEASPSEVWQMQFDPKG-----TTLAVAGGGSASVKLWDTATWNLIA  139 (315)
Q Consensus        69 ~~~g~~l~s~~~d~~i~~w~~~~~~~~----~~~~~~~~~v~~~~~~~~~-----~~~~~~~~~d~~i~~~d~~~~~~~~  139 (315)
                      +|++.++++++.|++|+||++.+++..    ..+..+.+.|+.++|+|++     ..++++++.|++|++||+...+...
T Consensus       170 ~~~~~~laS~s~D~tI~iWd~~~~~~~~~~~~~l~~~~~~V~~v~wsp~~~~~~~~~~LAs~s~DgtvrlWd~~~~~~~~  249 (524)
T 2j04_B          170 NEHLEMFDKEKHSSCIQIFKMNTSTLHCVKVQTIVHSFGEVWDLKWHEGCHAPHLVGCLSFVSQEGTINFLEIIDNATDV  249 (524)
T ss_dssp             ------------CEEEEEEEEETTTCCEEEEEEEEECCCSEEEEEECSSCCCSSSSCEEEEEETTSCEEEEECCCCSSSS
T ss_pred             chhhhhhccCCCCceEEEEEccCCCCCceEEEEEEecCCcEEEEEECCCCCCCCCCceEEEEecCCeEEEEEcCCCcccc
Confidence            344455666778999999999877642    3456677889999999972     2467889999999999997653210


Q ss_pred             --eecCCCCCCCCCCccCCCCcceEEEEECCCCCEEEEecCCCcEEEEEcccce-eeeeecCCccceEEE--EEcCCCC-
Q 021247          140 --TLSIPRPEGLKPTDKSSSKKFVLSVAWSPDGRRIACGSMDGTISVFDVTRAK-FLHHLEGHFMPVRSL--VYSPVDP-  213 (315)
Q Consensus       140 --~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~s~dg~i~i~d~~~~~-~~~~~~~~~~~v~~~--~~~~~~~-  213 (315)
                        ......    .......|...|.+++|+++ ..|++|+.||.|++||++++. ....+.+|...|+++  .|+| ++ 
T Consensus       250 ~~~~~~~~----p~~~l~~h~~~v~sv~~s~~-~~lasgs~DgtV~lWD~~~~~~~~~~~~~H~~~V~sv~~~~s~-~g~  323 (524)
T 2j04_B          250 HVFKMCEK----PSLTLSLADSLITTFDFLSP-TTVVCGFKNGFVAEFDLTDPEVPSFYDQVHDSYILSVSTAYSD-FED  323 (524)
T ss_dssp             SEEECCCS----CSEEECCTTTCEEEEEESSS-SEEEEEETTSEEEEEETTBCSSCSEEEECSSSCEEEEEEECCT-TSC
T ss_pred             ccceeecC----ceEEEEcCCCCEEEEEecCC-CeEEEEeCCCEEEEEECCCCCCceEEeecccccEEEEEEEcCC-CCC
Confidence              000000    00112345677999999986 489999999999999998764 445678999999999  4555 54 


Q ss_pred             cEEEEEeCCCeEEEEeCCCCeeEEEeecccc--cEEEEEEcCCCCeEEEEeCCCcEEEEecCccceehcccccccceEEE
Q 021247          214 RVLFSASDDTHVHMYDAEGKSLVTAMSGHAS--WVLSVDASPDGAAITTGSSDRTVKLWDLNMRAAMQSMTNHTDQVWGV  291 (315)
Q Consensus       214 ~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~--~i~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~  291 (315)
                      ++|++++.|++|++||++.++.+..+.+|..  .|.+++|+|+++.+++++.|++|++||++.+..+.++.+|.+.|++|
T Consensus       324 ~~laS~S~D~tvklWD~~~~~~~~~~~~~~~~~~v~~v~fsp~~~~l~s~~~d~tv~lwd~~~~~~~~~l~gH~~~V~sv  403 (524)
T 2j04_B          324 TVVSTVAVDGYFYIFNPKDIATTKTTVSRFRGSNLVPVVYCPQIYSYIYSDGASSLRAVPSRAAFAVHPLVSRETTITAI  403 (524)
T ss_dssp             CEEEEEETTSEEEEECGGGHHHHCEEEEECSCCSCCCEEEETTTTEEEEECSSSEEEEEETTCTTCCEEEEECSSCEEEE
T ss_pred             eEEEEeccCCeEEEEECCCCCcccccccccccCcccceEeCCCcCeEEEeCCCCcEEEEECcccccceeeecCCCceEEE
Confidence            8999999999999999988766655666643  47899999999999999999999999999988878888999999999


Q ss_pred             EEeeCCCEEEEEeCCCcEEEeec
Q 021247          292 SFRPLGGRVVSVSDDKSISLYEY  314 (315)
Q Consensus       292 ~~s~~~~~l~s~~~d~~i~i~~~  314 (315)
                      +|||+|++|++++.||+|+||+.
T Consensus       404 a~Sp~g~~l~Sgs~Dgtv~lwd~  426 (524)
T 2j04_B          404 GVSRLHPMVLAGSADGSLIITNA  426 (524)
T ss_dssp             ECCSSCCBCEEEETTTEEECCBS
T ss_pred             EeCCCCCeEEEEECCCEEEEEec
Confidence            99999999999999999999985

>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A

Probab=100.00  E-value=7.2e-36  Score=251.31  Aligned_cols=245  Identities=13%  Similarity=0.097  Sum_probs=205.4

Q ss_pred             eeccccccceEEEEeCCCCCEEEEeeCCCeEEEEECCCCc---eeEEeeCCcccEEEEEECCCCCeEEEEecCCCeEEEE
Q 021247           54 RTNTGHCLGVVSVAAHPSGIIAASASLDSFVRVFDVDTNA---SIATLEASPSEVWQMQFDPKGTTLAVAGGGSASVKLW  130 (315)
Q Consensus        54 ~~~~~h~~~v~~~~~~~~g~~l~s~~~d~~i~~w~~~~~~---~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~~  130 (315)
                      ....+|...|.+++|+|++.+|++++.|+.|++|++.++.   .......|...|.+++|+|+++.++++++.|+.|++|
T Consensus         5 ~~~~~h~~~v~~~~~s~~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~w   84 (342)
T 1yfq_A            5 QIEQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQIYVGTVQGEILKV   84 (342)
T ss_dssp             ECSSCCSSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEESSSEEEEEEETTSCEEEE
T ss_pred             ecccCCCCcEEEEEEcCCCCEEEEEcCCCeEEEEEeCCCCccccceeeeecCCceEEEEECCCCCcEEEEEcCCCeEEEE
Confidence            3345799999999999999999999999999999998876   3445557888999999999987234677899999999


Q ss_pred             ec-CCcceeeeecCCCCCCCCCCccCCCCcceEEEEECCCCCEEEEecCCCcEEEEEccc---------ceeeeeecCCc
Q 021247          131 DT-ATWNLIATLSIPRPEGLKPTDKSSSKKFVLSVAWSPDGRRIACGSMDGTISVFDVTR---------AKFLHHLEGHF  200 (315)
Q Consensus       131 d~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~s~dg~i~i~d~~~---------~~~~~~~~~~~  200 (315)
                      |+ .+.+. ..+..           ..|...|.+++|+| +++|++++.|+.|++||+++         ++.+..+. |.
T Consensus        85 d~~~~~~~-~~~~~-----------~~~~~~v~~l~~~~-~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~-~~  150 (342)
T 1yfq_A           85 DLIGSPSF-QALTN-----------NEANLGICRICKYG-DDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTK-VK  150 (342)
T ss_dssp             CSSSSSSE-EECBS-----------CCCCSCEEEEEEET-TTEEEEEETTSEEEEECHHHHTTBCEEEEESCSSSSS-SC
T ss_pred             EeccCCce-Eeccc-----------cCCCCceEEEEeCC-CCEEEEEcCCCeEEEEcccccccccccccCCeeeEEe-eC
Confidence            99 76544 22210           01556699999999 99999999999999999987         66666665 88


Q ss_pred             cceEEEEEcCCCCcEEEEEeCCCeEEEEeCCC-Ce--eEEEeecccccEEEEEEcC-CCCeEEEEeCCCcEEEEecCcc-
Q 021247          201 MPVRSLVYSPVDPRVLFSASDDTHVHMYDAEG-KS--LVTAMSGHASWVLSVDASP-DGAAITTGSSDRTVKLWDLNMR-  275 (315)
Q Consensus       201 ~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~-~~--~~~~~~~~~~~i~~~~~~~-~~~~l~s~~~d~~i~iwd~~~~-  275 (315)
                      ..+.++.|+|..   +++++.|+.|++||++. ..  .......|...+.+++|+| +++++++++.||.|++|+++.. 
T Consensus       151 ~~v~~~~~~~~~---l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~i~~~~~~~  227 (342)
T 1yfq_A          151 NKIFTMDTNSSR---LIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQG  227 (342)
T ss_dssp             CCEEEEEECSSE---EEEEESTTEEEEEESSCCTTCCCEEEECSCSSCEEEEEECSGGGCEEEEEETTSEEEEEECCTTC
T ss_pred             CceEEEEecCCc---EEEEeCCCeEEEEECCccccccceeeecCCCCceeEEEECCCCCCEEEEEecCCcEEEEEEcCCC
Confidence            899999999743   99999999999999987 43  3344557888999999999 9999999999999999999876 


Q ss_pred             -----ceehccccccc---------ceEEEEEeeCCCEEEEEeCCCcEEEeecC
Q 021247          276 -----AAMQSMTNHTD---------QVWGVSFRPLGGRVVSVSDDKSISLYEYS  315 (315)
Q Consensus       276 -----~~~~~~~~~~~---------~v~~~~~s~~~~~l~s~~~d~~i~i~~~~  315 (315)
                           +....+..|..         .|++++|+|++++|++++.||.|++||+.
T Consensus       228 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~  281 (342)
T 1yfq_A          228 DDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQ  281 (342)
T ss_dssp             CSTTCTTCEEEECCCCCTTCCSSCCCEEEEEECTTTCCEEEEETTSCEEEEETT
T ss_pred             cccccccceeeecccccccccccceeEEEEEEcCCCCEEEEecCCceEEEEcCc
Confidence                 66666777755         99999999999999999999999999963

>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A

Probab=100.00  E-value=1e-35  Score=252.94  Aligned_cols=250  Identities=15%  Similarity=0.194  Sum_probs=192.9

Q ss_pred             hhccccceEEEEEeecC-----CCCCcEEEEeeCCCcEEEEcCCCCccee---------eccccccceEEEEeCCCCCEE
Q 021247           10 ENAHEESVWAVTWVPAT-----ETRPALLLTGSLDETVKLWRPDDMQLER---------TNTGHCLGVVSVAAHPSGIIA   75 (315)
Q Consensus        10 ~~~h~~~v~~v~~~~~~-----~~~~~~l~sgs~d~~v~~w~~~~~~~~~---------~~~~h~~~v~~~~~~~~g~~l   75 (315)
                      +.+|++.|.++++.+..     +.....|++|+.|+.+++|+........         ....+...+.+++|+|+|+++
T Consensus        69 l~~~~~~v~s~~~~~~~~~~g~~~~~~~l~s~~~d~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~fSpDg~~l  148 (365)
T 4h5i_A           69 LEDNDDSPTAIDASKGIILVGCNENSTKITQGKGNKHLRKFKYDKVNDQLEFLTSVDFDASTNADDYTKLVYISREGTVA  148 (365)
T ss_dssp             CCTTSCCCCEEEEETTEEEEECCCCHHHHHHTSCCCCEEEEEEETTTTEEEEEEEECSSCCCCTTCCEEEEEECTTSSCE
T ss_pred             ccCCCCceEEEEeCCCEEEEEECCCccEEEEecCCCcEEEEEecCCCceEEEeeeeceeecCCcccCEEEEEEcCCCCEE
Confidence            45788899999876421     0011123344567889999865432211         112344568899999999987


Q ss_pred             E--EeeCCCeEEEEECCCCceeEEeeCCcccEEEEEECCCCCeEEEEecCCCeEEEEecCCcceeeeecCCCCCCCCCCc
Q 021247           76 A--SASLDSFVRVFDVDTNASIATLEASPSEVWQMQFDPKGTTLAVAGGGSASVKLWDTATWNLIATLSIPRPEGLKPTD  153 (315)
Q Consensus        76 ~--s~~~d~~i~~w~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~  153 (315)
                      +  +++.|++|++||+.+++.+..+. +..+|.+++|+|+++.+ ++++ ++.+.+|+..+++.+.....          
T Consensus       149 a~as~~~d~~i~iwd~~~~~~~~~~~-~~~~V~~v~fspdg~~l-~s~s-~~~~~~~~~~~~~~~~~~~~----------  215 (365)
T 4h5i_A          149 AIASSKVPAIMRIIDPSDLTEKFEIE-TRGEVKDLHFSTDGKVV-AYIT-GSSLEVISTVTGSCIARKTD----------  215 (365)
T ss_dssp             EEEESCSSCEEEEEETTTTEEEEEEE-CSSCCCEEEECTTSSEE-EEEC-SSCEEEEETTTCCEEEEECC----------
T ss_pred             EEEECCCCCEEEEeECCCCcEEEEeC-CCCceEEEEEccCCceE-Eecc-ceeEEEEEeccCcceeeeec----------
Confidence            6  45579999999999999888876 56789999999999865 4555 45677777766655433221          


Q ss_pred             cCCCCcceEEEEECCCCCEEEEecCCC----cEEEEEccccee----eeeecCCccceEEEEEcCCCCcEEEEEeCCCeE
Q 021247          154 KSSSKKFVLSVAWSPDGRRIACGSMDG----TISVFDVTRAKF----LHHLEGHFMPVRSLVYSPVDPRVLFSASDDTHV  225 (315)
Q Consensus       154 ~~~~~~~i~~~~~~~~~~~l~~~s~dg----~i~i~d~~~~~~----~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i  225 (315)
                       ..+...|.+++|+|+++++++++.|+    .++.||+.....    ...+.+|..+|++++|+| ++++|++|+.|+.|
T Consensus       216 -~~~~~~v~~v~fspdg~~l~~~s~d~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~Sp-dg~~lasgs~D~~V  293 (365)
T 4h5i_A          216 -FDKNWSLSKINFIADDTVLIAASLKKGKGIVLTKISIKSGNTSVLRSKQVTNRFKGITSMDVDM-KGELAVLASNDNSI  293 (365)
T ss_dssp             -CCTTEEEEEEEEEETTEEEEEEEESSSCCEEEEEEEEETTEEEEEEEEEEESSCSCEEEEEECT-TSCEEEEEETTSCE
T ss_pred             -CCCCCCEEEEEEcCCCCEEEEEecCCcceeEEeecccccceecceeeeeecCCCCCeEeEEECC-CCCceEEEcCCCEE
Confidence             23455699999999999999998877    588899865543    345678999999999999 67899999999999


Q ss_pred             EEEeCCCCeeEEEe-ecccccEEEEEEcCCCCeEEEEeCCCcEEEEecCc
Q 021247          226 HMYDAEGKSLVTAM-SGHASWVLSVDASPDGAAITTGSSDRTVKLWDLNM  274 (315)
Q Consensus       226 ~~wd~~~~~~~~~~-~~~~~~i~~~~~~~~~~~l~s~~~d~~i~iwd~~~  274 (315)
                      ++||.++++++..+ .+|...|++++|+|+|++|+||+.|++|+||++..
T Consensus       294 ~iwd~~~~~~~~~~~~gH~~~V~~v~fSpdg~~laS~S~D~tvrvw~ip~  343 (365)
T 4h5i_A          294 ALVKLKDLSMSKIFKQAHSFAITEVTISPDSTYVASVSAANTIHIIKLPL  343 (365)
T ss_dssp             EEEETTTTEEEEEETTSSSSCEEEEEECTTSCEEEEEETTSEEEEEECCT
T ss_pred             EEEECCCCcEEEEecCcccCCEEEEEECCCCCEEEEEeCCCeEEEEEcCC
Confidence            99999999888774 78999999999999999999999999999999964

>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A

Probab=100.00  E-value=2.4e-35  Score=249.80  Aligned_cols=245  Identities=15%  Similarity=0.155  Sum_probs=188.3

Q ss_pred             EEcCCCCcceeeccccccceEEEEeCCCCCEEEEeeCCCeEEEEECCCCceeEEeeCCcccEEEEEECCCCCeEEEEecC
Q 021247           44 LWRPDDMQLERTNTGHCLGVVSVAAHPSGIIAASASLDSFVRVFDVDTNASIATLEASPSEVWQMQFDPKGTTLAVAGGG  123 (315)
Q Consensus        44 ~w~~~~~~~~~~~~~h~~~v~~~~~~~~g~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~  123 (315)
                      +|++.+.+.......|..+|.+++|+|+|.+|++|+.|+ +++|++.+..........  .+..+++.++++.++++++.
T Consensus         3 i~s~~~~~~~~~~~~h~~~V~~v~fs~dg~~la~g~~~~-~~iw~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~   79 (355)
T 3vu4_A            3 LGSMITRNPIVPENHVSNPVTDYEFNQDQSCLILSTLKS-FEIYNVHPVAHIMSQEMR--HLSKVRMLHRTNYVAFVTGV   79 (355)
T ss_dssp             ----------------CCCCCEEEECTTSSEEEEECSSE-EEEEEETTEEEEEEEECS--CCCEEEECTTSSEEEEECSS
T ss_pred             cccccccCCccccccCCCceEEEEECCCCCEEEEEcCCE-EEEEecCCcceeeeeecC--CeEEEEEcCCCCEEEEEECC
Confidence            345555555556678999999999999999999888765 899999887665544332  46678888888888888889


Q ss_pred             CCeEEEEecCCcceeeeecCCCCCCCCCCccCCCCcceEEEEECCCCCEEEEecCCCcEEEEEcccc-eeeeeecCCccc
Q 021247          124 SASVKLWDTATWNLIATLSIPRPEGLKPTDKSSSKKFVLSVAWSPDGRRIACGSMDGTISVFDVTRA-KFLHHLEGHFMP  202 (315)
Q Consensus       124 d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~s~dg~i~i~d~~~~-~~~~~~~~~~~~  202 (315)
                      |++|++||..+++.+..+..+              ..|.+++++++.  ++++ .++.|++||+.++ +.+..+..   +
T Consensus        80 d~~v~iWd~~~~~~~~~~~~~--------------~~v~~v~~~~~~--~~~~-~~~~i~i~d~~~~~~~~~~~~~---~  139 (355)
T 3vu4_A           80 KEVVHIWDDVKKQDVSRIKVD--------------APVKDLFLSREF--IVVS-YGDVISVFKFGNPWKRITDDIR---F  139 (355)
T ss_dssp             TTEEEEEETTTTEEEEEEECS--------------SCEEEEEECSSE--EEEE-ETTEEEEEESSTTCCBSSCCEE---E
T ss_pred             ccEEEEEECCCCcEEEEEECC--------------CceEEEEEcCCE--EEEE-EcCEEEEEECCCCceeeEEecc---C
Confidence            999999999998887766432              248899998764  3333 4789999999887 65555543   4


Q ss_pred             eEEEEEcCCCCcEEEE--EeCCCeEEEEeCCCCe----------------eEEEeecccccEEEEEEcCCCCeEEEEeCC
Q 021247          203 VRSLVYSPVDPRVLFS--ASDDTHVHMYDAEGKS----------------LVTAMSGHASWVLSVDASPDGAAITTGSSD  264 (315)
Q Consensus       203 v~~~~~~~~~~~~l~s--~~~d~~i~~wd~~~~~----------------~~~~~~~~~~~i~~~~~~~~~~~l~s~~~d  264 (315)
                      ...+++++   .+++.  |+.||.|++||++.+.                .+..+.+|...|.+++|+|++++|++|+.|
T Consensus       140 ~~~~~~s~---~~la~~sg~~~g~v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~~~h~~~v~~~~~s~~g~~l~s~s~d  216 (355)
T 3vu4_A          140 GGVCEFSN---GLLVYSNEFNLGQIHITKLQSSGSATTQDQGVQQKAILGKGVLIKAHTNPIKMVRLNRKSDMVATCSQD  216 (355)
T ss_dssp             EEEEEEET---TEEEEEESSCTTCEEEEECCC------------------CCEEECCCSSCEEEEEECTTSSEEEEEETT
T ss_pred             CceEEEEc---cEEEEeCCCcCcEEEEEECCCCCccccccccccccccCcccEEEEccCCceEEEEECCCCCEEEEEeCC
Confidence            44556666   34544  6889999999998754                256788999999999999999999999999


Q ss_pred             Cc-EEEEecCccceehccc-c-cccceEEEEEeeCCCEEEEEeCCCcEEEeec
Q 021247          265 RT-VKLWDLNMRAAMQSMT-N-HTDQVWGVSFRPLGGRVVSVSDDKSISLYEY  314 (315)
Q Consensus       265 ~~-i~iwd~~~~~~~~~~~-~-~~~~v~~~~~s~~~~~l~s~~~d~~i~i~~~  314 (315)
                      ++ |++||+++++.+.++. + |...|++++|+|+|++|++++.|++|+|||+
T Consensus       217 ~~~v~iwd~~~~~~~~~~~~g~h~~~v~~~~~s~~~~~l~s~s~d~~v~iw~~  269 (355)
T 3vu4_A          217 GTIIRVFKTEDGVLVREFRRGLDRADVVDMKWSTDGSKLAVVSDKWTLHVFEI  269 (355)
T ss_dssp             CSEEEEEETTTCCEEEEEECTTCCSCEEEEEECTTSCEEEEEETTCEEEEEES
T ss_pred             CCEEEEEECCCCcEEEEEEcCCCCCcEEEEEECCCCCEEEEEECCCEEEEEEc
Confidence            98 9999999999988887 5 9999999999999999999999999999997

>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A

Probab=100.00  E-value=2.4e-36  Score=259.44  Aligned_cols=248  Identities=12%  Similarity=0.077  Sum_probs=175.8

Q ss_pred             cEEEEeeCCCcEEEEcCCCCcce-----eeccccccceEEEEeCC--------CCCEEEEeeCCCeEEEEECCCCceeEE
Q 021247           31 ALLLTGSLDETVKLWRPDDMQLE-----RTNTGHCLGVVSVAAHP--------SGIIAASASLDSFVRVFDVDTNASIAT   97 (315)
Q Consensus        31 ~~l~sgs~d~~v~~w~~~~~~~~-----~~~~~h~~~v~~~~~~~--------~g~~l~s~~~d~~i~~w~~~~~~~~~~   97 (315)
                      .+|++|+.|++|++|+.++.+..     ..+.+|.+.|++++|+|        +|++|++++.|++|||||+.++..+..
T Consensus       102 ~~las~~~d~~v~lw~~~~~~~~~~~~~~~~~gH~~~v~~v~~~p~~~~~~~~d~~~las~s~D~tv~~Wd~~~~~~~~~  181 (393)
T 4gq1_A          102 LFLACVCQDNTVRLIITKNETIITQHVLGGKSGHHNFVNDIDIADVYSADNRLAEQVIASVGDDCTLIIWRLTDEGPILA  181 (393)
T ss_dssp             EEEEEEETTSCEEEEEEETTEEEEEEEECTTTSCSSCEEEEEEEEEECTTCSEEEEEEEEEETTSEEEEEEEETTEEEEE
T ss_pred             CEEEEEeCCCcEEEEECCCCccceeeeecccCCCCCceEEEEEccccccccCCCCCEEEEEECCCeEEEEECCCCceeee
Confidence            37999999999999998776542     34679999999999987        889999999999999999998888888


Q ss_pred             eeCCcccEEEEEECCCCCeEEEEecCCCeEEEEecCCcceeeeecCCCCCCCCCCccCCCCcceEEEEECCCCCEEEEec
Q 021247           98 LEASPSEVWQMQFDPKGTTLAVAGGGSASVKLWDTATWNLIATLSIPRPEGLKPTDKSSSKKFVLSVAWSPDGRRIACGS  177 (315)
Q Consensus        98 ~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~s  177 (315)
                      +..+..++.+++|+|++..++++++.|++|++||+++++.........         ..+...+.....           
T Consensus       182 ~~~~~~~v~~v~~~p~~~~~l~~~~~d~~v~~wd~~t~~~~~~~~~~~---------~~~~~~~~s~~~-----------  241 (393)
T 4gq1_A          182 GYPLSSPGISVQFRPSNPNQLIVGERNGNIRIFDWTLNLSAEENSQTE---------LVKNPWLLTLNT-----------  241 (393)
T ss_dssp             EEECSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCCC-------------------CSCCCSEEEES-----------
T ss_pred             ecCCCCCcEEEEECCCCCceEEecCCCCEEEEEECCCCcccccccccC---------CcccceEEeccc-----------
Confidence            878889999999999988778899999999999998765433221100         000011111111           


Q ss_pred             CCCcEEEEEcccceeeeeecCCccceEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCeeEEEeecccccEEEEEEc-----
Q 021247          178 MDGTISVFDVTRAKFLHHLEGHFMPVRSLVYSPVDPRVLFSASDDTHVHMYDAEGKSLVTAMSGHASWVLSVDAS-----  252 (315)
Q Consensus       178 ~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~i~~~~~~-----  252 (315)
                                ..........+|...+.++.|.+.+++.+++++.|+.+++||+..+.....+..|...+..+.+.     
T Consensus       242 ----------~~~~~~~~~~~~~~~v~~v~~~~~dg~~l~s~s~d~~i~vwd~~~~~~~~~l~~~~~~~~~~~~~~~~~~  311 (393)
T 4gq1_A          242 ----------LPLVNTCHSSGIASSLANVRWIGSDGSGILAMCKSGAWLRWNLFANNDYNEISDSTMKLGPKNLLPNVQG  311 (393)
T ss_dssp             ----------GGGC------CCSSSCSEEEEETTTTCEEEEECTTSEEEEEEC-------------------CCSCSEEE
T ss_pred             ----------ccceeeeecccccccceeeeeecCCCCEEEEEeCCCCEEEEECccCCCCceEeeecCccccEEEcccccc
Confidence                      11111222346778889999986688999999999999999998776655555554444433332     


Q ss_pred             -------------C--CCCeEEEEeCCCcEEEEecCccceehcccccccceEEEEEeeCCCEEEEEeCCCc
Q 021247          253 -------------P--DGAAITTGSSDRTVKLWDLNMRAAMQSMTNHTDQVWGVSFRPLGGRVVSVSDDKS  308 (315)
Q Consensus       253 -------------~--~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~  308 (315)
                                   |  ++.++++|+.||+|++||+..++.......|..+|++++|||+|++||++++||.
T Consensus       312 ~~~~~~~~~~~~~~~~~~~~~~sgs~Dg~V~lwd~~~~~~~~~~~~~~~~V~svafspdG~~LA~as~~Gv  382 (393)
T 4gq1_A          312 ISLFPSLLGACPHPRYMDYFATAHSQHGLIQLINTYEKDSNSIPIQLGMPIVDFCWHQDGSHLAIATEGSV  382 (393)
T ss_dssp             ECSSCCSSCCEECSSCTTEEEEEETTTTEEEEEETTCTTCCEEEEECSSCEEEEEECTTSSEEEEEESSEE
T ss_pred             ccccCcceeEEEccCCCCEEEEEECCCCEEEEEECCCCcEEEEecCCCCcEEEEEEcCCCCEEEEEeCCCe
Confidence                         2  3346788889999999999998888888889999999999999999999998775

>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A

Probab=100.00  E-value=9.2e-35  Score=237.71  Aligned_cols=278  Identities=15%  Similarity=0.154  Sum_probs=184.7

Q ss_pred             ceEEEEEeecCCCCCcEEEEeeCCCcEEEEcCCCC---cceeeccccccceEEEEeCCCCCEEEE--eeCCCeEEEEECC
Q 021247           16 SVWAVTWVPATETRPALLLTGSLDETVKLWRPDDM---QLERTNTGHCLGVVSVAAHPSGIIAAS--ASLDSFVRVFDVD   90 (315)
Q Consensus        16 ~v~~v~~~~~~~~~~~~l~sgs~d~~v~~w~~~~~---~~~~~~~~h~~~v~~~~~~~~g~~l~s--~~~d~~i~~w~~~   90 (315)
                      +|.++.|-..+.+ + +.+.......|++|++.+.   +......+|..+|..+.+.|+..-|++  -+.=..-.++-+-
T Consensus        41 ~~~~~~~~~~~~~-~-~~~~~~~~~~v~lw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~v~sla  118 (356)
T 2w18_A           41 DVSAMFWERAGCK-E-PCIITACEDVVSLWKALDAWQWEKLYTWHFAEVPVLQIVPVPDVYNLVCVALGNLEIREIRALF  118 (356)
T ss_dssp             EEEEEEEC----C-E-EEEEEEESSEEEEEEESSSSBEEEEEEEECCSSCEEEECCCTTCCSCEEEEECSSSEEEEEEEC
T ss_pred             EEeeeeeccCCCC-c-cEEEEeccceEEEcccCCCccceeeEEEeccCceeEEEEEcCcccceeeeeeccccccceEEEE
Confidence            5677777655532 2 3444455689999998876   566667777777777777764322221  1111111111111


Q ss_pred             --CC----ceeEEeeCCcccEEEEEECCCCCeEEEEe--cCCCeEEEEecCC-cceeeeecCCCCCCCCCCccCCCCcce
Q 021247           91 --TN----ASIATLEASPSEVWQMQFDPKGTTLAVAG--GGSASVKLWDTAT-WNLIATLSIPRPEGLKPTDKSSSKKFV  161 (315)
Q Consensus        91 --~~----~~~~~~~~~~~~v~~~~~~~~~~~~~~~~--~~d~~i~~~d~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i  161 (315)
                        ..    ........+...++.+   ++++ ++.++  +.|++|++|++.. ++.+..+..+.+             .+
T Consensus       119 ~spd~~~~~~~l~s~g~~~~v~~l---~~g~-lv~ss~~g~d~~V~~~~~s~dG~~~~s~~~~~~-------------~v  181 (356)
T 2w18_A          119 CSSDDESEKQVLLKSGNIKAVLGL---TKRR-LVSSSGTLSDQQVEVMTFAEDGGGKENQFLMPP-------------EE  181 (356)
T ss_dssp             C------CCEEEEEEEEEEEEEEE---TTTE-EEEEESSSTTCEEEEEEECTTSCEEEEEEECCC-------------SS
T ss_pred             ECCCccccccEEEeCCCeEEEEec---CCCc-EEEecccCCCCcEEEEEECCCCceeeeeccCCC-------------ce
Confidence              00    0000011122223333   3333 44442  2588888888843 555555543322             36


Q ss_pred             EEEEECC---CCCEEEEecCCCcEEEEEcccceeeeeecCCc---cceEEEEEcCCCCcEE------------EEEeCCC
Q 021247          162 LSVAWSP---DGRRIACGSMDGTISVFDVTRAKFLHHLEGHF---MPVRSLVYSPVDPRVL------------FSASDDT  223 (315)
Q Consensus       162 ~~~~~~~---~~~~l~~~s~dg~i~i~d~~~~~~~~~~~~~~---~~v~~~~~~~~~~~~l------------~s~~~d~  223 (315)
                      +.++|++   ++..|++++.|++|++||+.+++.+..+.+|.   ..+.+++|+| ++.++            ++|+.|+
T Consensus       182 ~~l~fs~~~g~~~~LaSgS~D~TIkIWDl~TGk~l~tL~g~~~~v~~v~~vafSp-dG~~lvs~s~~~~~w~laSGs~D~  260 (356)
T 2w18_A          182 TILTFAEVQGMQEALLGTTIMNNIVIWNLKTGQLLKKMHIDDSYQASVCHKAYSE-MGLLFIVLSHPCAKESESLRSPVF  260 (356)
T ss_dssp             CEEEEEEEETSTTEEEEEETTSEEEEEETTTCCEEEEEECCC---CCCEEEEEEE-TTEEEEEEC------------CCE
T ss_pred             eeEEeeccCCCCceEEEecCCCcEEEEECCCCcEEEEEcCCCcceeeeEEEEECC-CCCEEEEeccCCCcceeeccCCCc
Confidence            6788888   77999999999999999999999999987653   3677789999 55554            6788899


Q ss_pred             eEEEEeCCCCeeEEEe-----ecccccEEEEEEcCCCCeEEEEeCCCcEEEEecCccceehcccccccceE-EEEEeeCC
Q 021247          224 HVHMYDAEGKSLVTAM-----SGHASWVLSVDASPDGAAITTGSSDRTVKLWDLNMRAAMQSMTNHTDQVW-GVSFRPLG  297 (315)
Q Consensus       224 ~i~~wd~~~~~~~~~~-----~~~~~~i~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~-~~~~s~~~  297 (315)
                      +|++||..+++.+..+     .+|...+.+..++  +.++++|+.|++|+|||+.+++.++++.+|.+.+. .++|||+|
T Consensus       261 tIklWd~~tgk~l~v~~~~~p~Gh~~~~lsg~~s--g~~lASgS~DgTIkIWDl~tGk~l~tL~gH~~~vvs~vafSPDG  338 (356)
T 2w18_A          261 QLIVINPKTTLSVGVMLYCLPPGQAGRFLEGDVK--DHCAAAILTSGTIAIWDLLLGQCTALLPPVSDQHWSFVKWSGTD  338 (356)
T ss_dssp             EEEEEETTTTEEEEEEEECCCTTCCCCEEEEEEE--TTEEEEEETTSCEEEEETTTCSEEEEECCC--CCCCEEEECSSS
T ss_pred             EEEEEECCCCEEEEEEEeeccCCCcceeEccccC--CCEEEEEcCCCcEEEEECCCCcEEEEecCCCCCeEEEEEECCCC
Confidence            9999999998877654     3676665544444  77899999999999999999999999999987766 58999999


Q ss_pred             CEEEEEeCCCcEEEeecC
Q 021247          298 GRVVSVSDDKSISLYEYS  315 (315)
Q Consensus       298 ~~l~s~~~d~~i~i~~~~  315 (315)
                      ++|++++.|++|+|||+.
T Consensus       339 ~~LaSGS~D~TIklWd~~  356 (356)
T 2w18_A          339 SHLLAGQKDGNIFVYHYS  356 (356)
T ss_dssp             SEEEEECTTSCEEEEEEC
T ss_pred             CEEEEEECCCcEEEecCC
Confidence            999999999999999974

>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=100.00  E-value=6.4e-35  Score=253.22  Aligned_cols=261  Identities=13%  Similarity=0.183  Sum_probs=202.8

Q ss_pred             hccccceEEEEEeecCCCCCcEEEEeeCCCcEEEEcCCCCcceeeccccccceEEEEeCCCCCEEEEeeCCCeEEEEECC
Q 021247           11 NAHEESVWAVTWVPATETRPALLLTGSLDETVKLWRPDDMQLERTNTGHCLGVVSVAAHPSGIIAASASLDSFVRVFDVD   90 (315)
Q Consensus        11 ~~h~~~v~~v~~~~~~~~~~~~l~sgs~d~~v~~w~~~~~~~~~~~~~h~~~v~~~~~~~~g~~l~s~~~d~~i~~w~~~   90 (315)
                      .+|...|++|+|+|.+           .++.+.+|+.+..+. ..+ .|...|.+++|+|+|.+|++++.||.|++||..
T Consensus        49 ~gh~~~v~~V~FsPdg-----------~~~~~~~~~~~~~~~-~~~-~~~~~V~~vawSPdG~~LAs~s~dg~V~iwd~~  115 (588)
T 2j04_A           49 NCNSKNLFHVKEFPLE-----------FENKLDFELAQQNGL-LNS-QPVCYPRVCKPSPIDDWMAVLSNNGNVSVFKDN  115 (588)
T ss_dssp             SSBGGGTEEEEEECCC-----------CCCTTTTSCCCSSCS-STT-SCSCCEEEEEECSSSSCEEEEETTSCEEEEETT
T ss_pred             cCCCccEEEEEECCCC-----------CcceEEEEeCCCceE-eec-CCCCcEEEEEECCCCCEEEEEeCCCcEEEEeCC
Confidence            6899999999999965           466666665432222 222 457889999999999999999999999999964


Q ss_pred             CCceeEEeeCCcc-----cEEEEEECCCCCeEEEEecCCCeEEEEecCCcce-------eeeecCCCCCCCCCCccCCCC
Q 021247           91 TNASIATLEASPS-----EVWQMQFDPKGTTLAVAGGGSASVKLWDTATWNL-------IATLSIPRPEGLKPTDKSSSK  158 (315)
Q Consensus        91 ~~~~~~~~~~~~~-----~v~~~~~~~~~~~~~~~~~~d~~i~~~d~~~~~~-------~~~~~~~~~~~~~~~~~~~~~  158 (315)
                      .  .+..+. |..     .+.+++|+|+|+.+ ++|+.||+|++||+.+++.       +.++....         .+|.
T Consensus       116 ~--~l~~l~-~~~~~~~~sv~svafSPDG~~L-Asgs~DGtVkIWd~~~~~l~~~~~i~l~ti~~~~---------~gh~  182 (588)
T 2j04_A          116 K--MLTNLD-SKGNLSSRTYHCFEWNPIESSI-VVGNEDGELQFFSIRKNSENTPEFYFESSIRLSD---------AGSK  182 (588)
T ss_dssp             E--EEEECC-CSSCSTTTCEEEEEECSSSSCE-EEEETTSEEEEEECCCCTTTCCCCEEEEEEECSC---------TTCC
T ss_pred             c--eeeecc-CCCccccccEEEEEEcCCCCEE-EEEcCCCEEEEEECCCCccccccceeeeeeeccc---------cccc
Confidence            4  556666 554     49999999999865 6788999999999987643       23332111         2356


Q ss_pred             cceEEEEECCCCCEEEEecCCCcEEEEEccccee---eeee-cCCccceEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCe
Q 021247          159 KFVLSVAWSPDGRRIACGSMDGTISVFDVTRAKF---LHHL-EGHFMPVRSLVYSPVDPRVLFSASDDTHVHMYDAEGKS  234 (315)
Q Consensus       159 ~~i~~~~~~~~~~~l~~~s~dg~i~i~d~~~~~~---~~~~-~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~  234 (315)
                      .+|.+++|+|+|  +++++.|+.+++||+..+..   ...+ .+|...|.+++|+   ++.+++++ ++.|++||..++.
T Consensus       183 ~~V~sVawSPdg--Laass~D~tVrlWd~~~~~~~~~~~tL~~~h~~~V~svaFs---g~~LASa~-~~tIkLWd~~~~~  256 (588)
T 2j04_A          183 DWVTHIVWYEDV--LVAALSNNSVFSMTVSASSHQPVSRMIQNASRRKITDLKIV---DYKVVLTC-PGYVHKIDLKNYS  256 (588)
T ss_dssp             CCEEEEEEETTE--EEEEETTCCEEEECCCSSSSCCCEEEEECCCSSCCCCEEEE---TTEEEEEC-SSEEEEEETTTTE
T ss_pred             ccEEEEEEcCCc--EEEEeCCCeEEEEECCCCccccceeeecccccCcEEEEEEE---CCEEEEEe-CCeEEEEECCCCe
Confidence            789999999999  88888999999999987763   2456 4788899999998   36888887 6999999999887


Q ss_pred             eEEEeecccccEEEEEE--cCCCCeEEEEeCCCcEEEEecCccc-----------------------eehcccccccceE
Q 021247          235 LVTAMSGHASWVLSVDA--SPDGAAITTGSSDRTVKLWDLNMRA-----------------------AMQSMTNHTDQVW  289 (315)
Q Consensus       235 ~~~~~~~~~~~i~~~~~--~~~~~~l~s~~~d~~i~iwd~~~~~-----------------------~~~~~~~~~~~v~  289 (315)
                      ......+|...+..+.+  +|++..+++++.||+ ++|..+.-.                       .+..+.+ ...|.
T Consensus       257 ~~~~~~gh~~~V~~va~~~s~d~~~La~a~edG~-klw~~d~~~~spd~~l~a~~d~~v~lW~~~g~~l~~~~~-~~~I~  334 (588)
T 2j04_A          257 ISSLKTGSLENFHIIPLNHEKESTILLMSNKTSY-KVLLEDELHVTADNIIAPYLEKKFKKWSTIWNEFNNYET-TLVIH  334 (588)
T ss_dssp             EEEEECSCCSCCCEEEETTCSSCEEEEECSSCEE-EEEESSSEEEECCCSSHHHHHHHHHHTTTTTTSSSSSCC-EEEEE
T ss_pred             EEEEEcCCCceEEEEEeeeCCCCCEEEEEcCCCC-EEEeeccEEECCCceEEEEcCCEEEEEECCCCceeeecc-ceEEE
Confidence            75544489999999999  999999999999999 999874210                       0111111 33589


Q ss_pred             EEEEeeCCCEEEEEeC
Q 021247          290 GVSFRPLGGRVVSVSD  305 (315)
Q Consensus       290 ~~~~s~~~~~l~s~~~  305 (315)
                      +++|||||..+|+++.
T Consensus       335 ~va~SPdG~~lA~~~~  350 (588)
T 2j04_A          335 GISLSPDGYSIAIVYD  350 (588)
T ss_dssp             EEEECTTSSEEEEEEE
T ss_pred             EEEECCCCCEEEEEEe
Confidence            9999999999998764

>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A

Probab=100.00  E-value=6.8e-35  Score=251.16  Aligned_cols=249  Identities=18%  Similarity=0.291  Sum_probs=204.5

Q ss_pred             hhhccccceEEEEEee-cCCCCCcEEEEeeCCCcEEEEcCCCC-------cceeeccccccceEEEEeCCCC-CEEEEee
Q 021247            9 VENAHEESVWAVTWVP-ATETRPALLLTGSLDETVKLWRPDDM-------QLERTNTGHCLGVVSVAAHPSG-IIAASAS   79 (315)
Q Consensus         9 ~~~~h~~~v~~v~~~~-~~~~~~~~l~sgs~d~~v~~w~~~~~-------~~~~~~~~h~~~v~~~~~~~~g-~~l~s~~   79 (315)
                      .+.+|.+.|++++|+| .+.    +|++|+.||.|++|+..+.       +....+.+|...|.+++|+|++ .++++++
T Consensus        76 ~~~~h~~~V~~~~~~p~~~~----~l~s~s~dg~v~vw~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~~  151 (402)
T 2aq5_A           76 LVCGHTAPVLDIAWCPHNDN----VIASGSEDCTVMVWEIPDGGLVLPLREPVITLEGHTKRVGIVAWHPTAQNVLLSAG  151 (402)
T ss_dssp             CBCCCSSCEEEEEECTTCTT----EEEEEETTSEEEEEECCTTCCSSCBCSCSEEEECCSSCEEEEEECSSBTTEEEEEE
T ss_pred             eEecCCCCEEEEEeCCCCCC----EEEEEeCCCeEEEEEccCCCCccccCCceEEecCCCCeEEEEEECcCCCCEEEEEc
Confidence            4568999999999999 443    8999999999999998876       4456778899999999999998 6999999


Q ss_pred             CCCeEEEEECCCCceeEEe--eCCcccEEEEEECCCCCeEEEEecCCCeEEEEecCCcceeeeec-CCCCCCCCCCccCC
Q 021247           80 LDSFVRVFDVDTNASIATL--EASPSEVWQMQFDPKGTTLAVAGGGSASVKLWDTATWNLIATLS-IPRPEGLKPTDKSS  156 (315)
Q Consensus        80 ~d~~i~~w~~~~~~~~~~~--~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~-~~~~~~~~~~~~~~  156 (315)
                      .|+.|++||+.+++.+..+  ..|...|.+++|+|+++.+ ++++.|+.|++||+++++.+..+. .+.           
T Consensus       152 ~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l-~~~~~d~~i~iwd~~~~~~~~~~~~~~~-----------  219 (402)
T 2aq5_A          152 CDNVILVWDVGTGAAVLTLGPDVHPDTIYSVDWSRDGALI-CTSCRDKRVRVIEPRKGTVVAEKDRPHE-----------  219 (402)
T ss_dssp             TTSCEEEEETTTTEEEEEECTTTCCSCEEEEEECTTSSCE-EEEETTSEEEEEETTTTEEEEEEECSSC-----------
T ss_pred             CCCEEEEEECCCCCccEEEecCCCCCceEEEEECCCCCEE-EEEecCCcEEEEeCCCCceeeeeccCCC-----------
Confidence            9999999999999998888  7889999999999998865 577899999999999888776652 211           


Q ss_pred             CCcceEEEEECCCCCEEEEe---cCCCcEEEEEccccee-eeee-cCCccceEEEEEcCCCCcEEEEEeCCCeEEEEeCC
Q 021247          157 SKKFVLSVAWSPDGRRIACG---SMDGTISVFDVTRAKF-LHHL-EGHFMPVRSLVYSPVDPRVLFSASDDTHVHMYDAE  231 (315)
Q Consensus       157 ~~~~i~~~~~~~~~~~l~~~---s~dg~i~i~d~~~~~~-~~~~-~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~  231 (315)
                       ...+.+++|+|++++|++|   +.|+.|++||+++.+. .... ..|...+.++.|+|++..++++++.|+.|++||+.
T Consensus       220 -~~~~~~~~~~~~~~~l~~g~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~g~~dg~i~i~d~~  298 (402)
T 2aq5_A          220 -GTRPVHAVFVSEGKILTTGFSRMSERQVALWDTKHLEEPLSLQELDTSSGVLLPFFDPDTNIVYLCGKGDSSIRYFEIT  298 (402)
T ss_dssp             -SSSCCEEEECSTTEEEEEEECTTCCEEEEEEETTBCSSCSEEEECCCCSSCEEEEEETTTTEEEEEETTCSCEEEEEEC
T ss_pred             -CCcceEEEEcCCCcEEEEeccCCCCceEEEEcCccccCCceEEeccCCCceeEEEEcCCCCEEEEEEcCCCeEEEEEec
Confidence             1126789999999999999   8999999999987654 2222 24667899999999554444567789999999998


Q ss_pred             CCee-EEEeec--ccccEEEEEEcCCCCeEEEEeCCCcEEEEecCccc
Q 021247          232 GKSL-VTAMSG--HASWVLSVDASPDGAAITTGSSDRTVKLWDLNMRA  276 (315)
Q Consensus       232 ~~~~-~~~~~~--~~~~i~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~  276 (315)
                      .++. +..+..  |...|.+++|+|++.++++  .++.+++|++..+.
T Consensus       299 ~~~~~~~~l~~~~~~~~v~~~~~sp~~~~~~s--~~~~~~~~~l~~~~  344 (402)
T 2aq5_A          299 SEAPFLHYLSMFSSKESQRGMGYMPKRGLEVN--KCEIARFYKLHERK  344 (402)
T ss_dssp             SSTTCEEEEEEECCSSCCSEEEECCGGGSCGG--GTEEEEEEEEETTE
T ss_pred             CCCcceEeecccccCCcccceEEeccccccee--cceeEEEEEcCCCc
Confidence            7763 444443  4588999999999988764  56799999987643

>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}

Probab=100.00  E-value=3.8e-34  Score=250.05  Aligned_cols=241  Identities=12%  Similarity=0.132  Sum_probs=202.3

Q ss_pred             cceEEEEeCCCCCEEEEeeCCCeEEEEECCCCc---eeEEeeCC------------------------------------
Q 021247           61 LGVVSVAAHPSGIIAASASLDSFVRVFDVDTNA---SIATLEAS------------------------------------  101 (315)
Q Consensus        61 ~~v~~~~~~~~g~~l~s~~~d~~i~~w~~~~~~---~~~~~~~~------------------------------------  101 (315)
                      .++.++.|+++|.+++++ .++.|++||+.+++   .+..+..+                                    
T Consensus         5 ~p~~~v~~s~dg~~l~~~-~~~~i~v~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (450)
T 2vdu_B            5 HPLQNLLTSRDGSLVFAI-IKNCILSFKYQSPNHWEFAGKWSDDFDKIQESRNTTAKEQQGQSSENENENKKLKSNKGDS   83 (450)
T ss_dssp             CCCCEEEECSSSSEEEEE-ETTEEEEEEEETTTEEEEEEEEECCC-----------------------------------
T ss_pred             ccEEEEEecCCCCEEEEE-eCCeEEEEECCCCCcceeeeecCCccccccccccccchhhccccccccccccccccCcCcc
Confidence            478899999999976655 57899999999888   55444422                                    


Q ss_pred             ------------------cccEEEEEECCCCCeEEEEecCCCeEEEEecC--CcceeeeecCCCCCCCCCCccCCCCcce
Q 021247          102 ------------------PSEVWQMQFDPKGTTLAVAGGGSASVKLWDTA--TWNLIATLSIPRPEGLKPTDKSSSKKFV  161 (315)
Q Consensus       102 ------------------~~~v~~~~~~~~~~~~~~~~~~d~~i~~~d~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~i  161 (315)
                                        ...|.+++|+|+++.++++++.|+.|++||+.  +++.+..+...           .+...|
T Consensus        84 ~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~dg~v~iwd~~~~~~~~~~~~~~~-----------~~~~~v  152 (450)
T 2vdu_B           84 IKRTAAKVPSPGLGAPPIYSYIRNLRLTSDESRLIACADSDKSLLVFDVDKTSKNVLKLRKRF-----------CFSKRP  152 (450)
T ss_dssp             ----------------CCCCCEEEEEECTTSSEEEEEEGGGTEEEEEEECSSSSSCEEEEEEE-----------ECSSCE
T ss_pred             ccccCccccCCCCCCCccCCceEEEEEcCCCCEEEEEECCCCeEEEEECcCCCCceeeeeecc-----------cCCCCc
Confidence                              22699999999999877889999999999998  77666555311           123458


Q ss_pred             EEEEECCCCCEEEEecCCCcEEEEEcccceeee----eecCCccceEEEEEcCC--CCcEEEEEeCCCeEEEEeCCCCee
Q 021247          162 LSVAWSPDGRRIACGSMDGTISVFDVTRAKFLH----HLEGHFMPVRSLVYSPV--DPRVLFSASDDTHVHMYDAEGKSL  235 (315)
Q Consensus       162 ~~~~~~~~~~~l~~~s~dg~i~i~d~~~~~~~~----~~~~~~~~v~~~~~~~~--~~~~l~s~~~d~~i~~wd~~~~~~  235 (315)
                      .+++|+|++++|++++.+|.+++|++.+++...    .+.+|...|.+++|+|+  ++++|++++.|+.|++||++.++.
T Consensus       153 ~~~~~sp~~~~l~~~~~~g~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~d~~i~vwd~~~~~~  232 (450)
T 2vdu_B          153 NAISIAEDDTTVIIADKFGDVYSIDINSIPEEKFTQEPILGHVSMLTDVHLIKDSDGHQFIITSDRDEHIKISHYPQCFI  232 (450)
T ss_dssp             EEEEECTTSSEEEEEETTSEEEEEETTSCCCSSCCCCCSEECSSCEEEEEEEECTTSCEEEEEEETTSCEEEEEESCTTC
T ss_pred             eEEEEcCCCCEEEEEeCCCcEEEEecCCcccccccceeeecccCceEEEEEcCCCCCCcEEEEEcCCCcEEEEECCCCce
Confidence            999999999999999999999999998776544    67789999999999994  177999999999999999998877


Q ss_pred             EEE-eecccccEEEEEEcCCCCeEEEEeCCCcEEEEecCccceehcccc-------------------------cccceE
Q 021247          236 VTA-MSGHASWVLSVDASPDGAAITTGSSDRTVKLWDLNMRAAMQSMTN-------------------------HTDQVW  289 (315)
Q Consensus       236 ~~~-~~~~~~~i~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~-------------------------~~~~v~  289 (315)
                      +.. +.+|...|.+++|+ ++++|++++.|++|++||+++++.+..+..                         ....|.
T Consensus       233 ~~~~~~~h~~~v~~~~~s-d~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~  311 (450)
T 2vdu_B          233 VDKWLFGHKHFVSSICCG-KDYLLLSAGGDDKIFAWDWKTGKNLSTFDYNSLIKPYLNDQHLAPPRFQNENNDIIEFAVS  311 (450)
T ss_dssp             EEEECCCCSSCEEEEEEC-STTEEEEEESSSEEEEEETTTCCEEEEEECHHHHGGGCCTTSBC----------CBCCCEE
T ss_pred             eeeeecCCCCceEEEEEC-CCCEEEEEeCCCeEEEEECCCCcEeeeecchhhhhhhhhhcccccccccccccccceEEEE
Confidence            766 56899999999999 999999999999999999998887666542                         234689


Q ss_pred             EEEEeeCCCEEEEEe-CCCcEEEeec
Q 021247          290 GVSFRPLGGRVVSVS-DDKSISLYEY  314 (315)
Q Consensus       290 ~~~~s~~~~~l~s~~-~d~~i~i~~~  314 (315)
                      +++|+|++++|++++ .|+.|+||++
T Consensus       312 ~i~~~~~~~~l~~~~~~d~~i~iw~~  337 (450)
T 2vdu_B          312 KIIKSKNLPFVAFFVEATKCIIILEM  337 (450)
T ss_dssp             EEEECSSSSEEEEEETTCSEEEEEEE
T ss_pred             EEEEeCCCCEEEEEECCCCeEEEEEe
Confidence            999999999999998 8999999997

>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1

Probab=100.00  E-value=3.9e-33  Score=242.62  Aligned_cols=231  Identities=23%  Similarity=0.399  Sum_probs=205.1

Q ss_pred             cccccceEEEEeCCCCCEEEEeeCCCeEEEEECCCCceeEEeeCCcccEEEEEECCCCCeEEEEecCCCeEEEEecCCcc
Q 021247           57 TGHCLGVVSVAAHPSGIIAASASLDSFVRVFDVDTNASIATLEASPSEVWQMQFDPKGTTLAVAGGGSASVKLWDTATWN  136 (315)
Q Consensus        57 ~~h~~~v~~~~~~~~g~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~~d~~~~~  136 (315)
                      .+|..+|.++++  ++.++++|+.|+.|++||+.+++.+..+..|...|.+++|  +++ ++++|+.|++|++||+.+++
T Consensus       130 ~~~~~~v~~~~~--d~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~--~~~-~l~sg~~dg~i~vwd~~~~~  204 (435)
T 1p22_A          130 SETSKGVYCLQY--DDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQY--DER-VIITGSSDSTVRVWDVNTGE  204 (435)
T ss_dssp             CSSCCCEEEEEC--CSSEEEEEESSSCEEEEESSSCCEEEEECCCSSCEEEEEC--CSS-EEEEEETTSCEEEEESSSCC
T ss_pred             cCCCCcEEEEEE--CCCEEEEEeCCCeEEEEeCCCCeEEEEEcCCCCcEEEEEE--CCC-EEEEEcCCCeEEEEECCCCc
Confidence            456678998887  7899999999999999999999999999999999999999  344 56788999999999999988


Q ss_pred             eeeeecCCCCCCCCCCccCCCCcceEEEEECCCCCEEEEecCCCcEEEEEcccceee---eeecCCccceEEEEEcCCCC
Q 021247          137 LIATLSIPRPEGLKPTDKSSSKKFVLSVAWSPDGRRIACGSMDGTISVFDVTRAKFL---HHLEGHFMPVRSLVYSPVDP  213 (315)
Q Consensus       137 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~s~dg~i~i~d~~~~~~~---~~~~~~~~~v~~~~~~~~~~  213 (315)
                      .+..+.             .|...|.+++|++  +.+++|+.||.|++||+.+++..   ..+.+|...|.++.|   ++
T Consensus       205 ~~~~~~-------------~h~~~v~~l~~~~--~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~---~~  266 (435)
T 1p22_A          205 MLNTLI-------------HHCEAVLHLRFNN--GMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDF---DD  266 (435)
T ss_dssp             EEEEEC-------------CCCSCEEEEECCT--TEEEEEETTSCEEEEECSSSSCCEEEEEECCCSSCEEEEEE---ET
T ss_pred             EEEEEc-------------CCCCcEEEEEEcC--CEEEEeeCCCcEEEEeCCCCCCceeeeEecCCCCcEEEEEe---CC
Confidence            776663             2344589999974  59999999999999999877654   667889999999998   45


Q ss_pred             cEEEEEeCCCeEEEEeCCCCeeEEEeecccccEEEEEEcCCCCeEEEEeCCCcEEEEecCccceehcccccccceEEEEE
Q 021247          214 RVLFSASDDTHVHMYDAEGKSLVTAMSGHASWVLSVDASPDGAAITTGSSDRTVKLWDLNMRAAMQSMTNHTDQVWGVSF  293 (315)
Q Consensus       214 ~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~  293 (315)
                      .++++++.|+.|++||+++++.+..+.+|...|.++.++  +.++++|+.||.|++||+++++.+.++.+|...|.+++|
T Consensus       267 ~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~  344 (435)
T 1p22_A          267 KYIVSASGDRTIKVWNTSTCEFVRTLNGHKRGIACLQYR--DRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRF  344 (435)
T ss_dssp             TEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEEE--TTEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEC
T ss_pred             CEEEEEeCCCeEEEEECCcCcEEEEEcCCCCcEEEEEeC--CCEEEEEeCCCeEEEEECCCCCEEEEEeCCcCcEEEEEe
Confidence            799999999999999999999999999999999999985  679999999999999999999999999999999999999


Q ss_pred             eeCCCEEEEEeCCCcEEEeec
Q 021247          294 RPLGGRVVSVSDDKSISLYEY  314 (315)
Q Consensus       294 s~~~~~l~s~~~d~~i~i~~~  314 (315)
                        ++.+|++++.||+|++||+
T Consensus       345 --~~~~l~sg~~dg~i~vwd~  363 (435)
T 1p22_A          345 --DNKRIVSGAYDGKIKVWDL  363 (435)
T ss_dssp             --CSSEEEEEETTSCEEEEEH
T ss_pred             --cCCEEEEEeCCCcEEEEEC
Confidence              6789999999999999996

>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}

Probab=100.00  E-value=3.8e-33  Score=232.20  Aligned_cols=248  Identities=25%  Similarity=0.397  Sum_probs=204.4

Q ss_pred             hccccceEEEEEeecCCCCCcEEEEeeCCCcEEEEcCCCCcceeeccccccceEEEEeCCCCCEEEEeeCCCeEEEEECC
Q 021247           11 NAHEESVWAVTWVPATETRPALLLTGSLDETVKLWRPDDMQLERTNTGHCLGVVSVAAHPSGIIAASASLDSFVRVFDVD   90 (315)
Q Consensus        11 ~~h~~~v~~v~~~~~~~~~~~~l~sgs~d~~v~~w~~~~~~~~~~~~~h~~~v~~~~~~~~g~~l~s~~~d~~i~~w~~~   90 (315)
                      .+|...|++++|+|.++    +|++|+.||+|++|+..+.+..+...+|...+.++..  ++.++++++.++.+++|+..
T Consensus        64 ~~~~~~V~~v~~~~~~~----~l~sgs~Dg~v~iw~~~~~~~~~~~~~h~~~~~~~~~--~~~~l~s~~~~~~~~~~~~~  137 (318)
T 4ggc_A           64 EQPGEYISSVAWIKEGN----YLAVGTSSAEVQLWDVQQQKRLRNMTSHSARVGSLSW--NSYILSSGSRSGHIHHHDVR  137 (318)
T ss_dssp             CSTTCCEEEEEECTTSS----EEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEE--ETTEEEEEETTSEEEEEETT
T ss_pred             cCCCCeEEEEEECCCCC----EEEEEECCCcEEEeecCCceeEEEecCccceEEEeec--CCCEEEEEecCCceEeeecC
Confidence            47888999999999775    7999999999999999999998889999988887665  56799999999999999998


Q ss_pred             CCc-eeEEeeCCcccEEEEEECCCCCeEEEEecCCCeEEEEecCCcceeeeecCCCCCCCCCCccCCCCcceEEEEECCC
Q 021247           91 TNA-SIATLEASPSEVWQMQFDPKGTTLAVAGGGSASVKLWDTATWNLIATLSIPRPEGLKPTDKSSSKKFVLSVAWSPD  169 (315)
Q Consensus        91 ~~~-~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~  169 (315)
                      ... .+..+..|...+..+.+++.++.+ ++++.|++|++||+++++......         .....+...|..++++|+
T Consensus       138 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~s~~~d~~i~iwd~~~~~~~~~~~---------~~~~~~~~~v~~~~~~~~  207 (318)
T 4ggc_A          138 VAEHHVATLSGHSQEVCGLRWAPDGRHL-ASGGNDNLVNVWPSAPGEGGWVPL---------QTFTQHQGAVKAVAWCPW  207 (318)
T ss_dssp             SSSCEEEEEECCSSCEEEEEECTTSSEE-EEEETTSCEEEEESSCBTTBSCCS---------EEECCCCSCEEEEEECTT
T ss_pred             CCceeEEEEcCccCceEEEEEcCCCCEE-EEEecCcceeEEECCCCcccccce---------eeecccCCceEEEEecCC
Confidence            764 456778889999999999998865 678899999999998765332111         111234456889999997


Q ss_pred             CCEE---EEecCCCcEEEEEcccceeeeeecCCccceEEEEEcCCCCcEEEE-EeCCCeEEEEeCCCCeeEEEeeccccc
Q 021247          170 GRRI---ACGSMDGTISVFDVTRAKFLHHLEGHFMPVRSLVYSPVDPRVLFS-ASDDTHVHMYDAEGKSLVTAMSGHASW  245 (315)
Q Consensus       170 ~~~l---~~~s~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s-~~~d~~i~~wd~~~~~~~~~~~~~~~~  245 (315)
                      +..+   ++++.++.|++||.+......... +...+..+.|+|.+..++++ ++.|+.|++||.++++.+..+.+|.+.
T Consensus       208 ~~~~~~~~~~~~~~~i~lwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~~sg~~d~~i~iwd~~~~~~~~~l~gH~~~  286 (318)
T 4ggc_A          208 QSNVLATGGGTSDRHIRIWNVCSGACLSAVD-AHSQVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAELKGHTSR  286 (318)
T ss_dssp             STTEEEEEECTTTCEEEEEETTTCCEEEEEE-CSSCEEEEEEETTTTEEEEEECTTTCCEEEEETTTCCEEEEECCCSSC
T ss_pred             CCcEEEEEecCCCCEEEEEeccccccccccc-ceeeeeeeeecccccceEEEEEcCCCEEEEEECCCCcEEEEEcCCCCC
Confidence            6533   467789999999998777655543 55678999999865554443 347999999999999999999999999


Q ss_pred             EEEEEEcCCCCeEEEEeCCCcEEEEecCcc
Q 021247          246 VLSVDASPDGAAITTGSSDRTVKLWDLNMR  275 (315)
Q Consensus       246 i~~~~~~~~~~~l~s~~~d~~i~iwd~~~~  275 (315)
                      |++++|+|++++|+||+.|++|+|||+...
T Consensus       287 V~~l~~spdg~~l~S~s~D~~v~iWd~~~~  316 (318)
T 4ggc_A          287 VLSLTMSPDGATVASAAADETLRLWRCFEL  316 (318)
T ss_dssp             EEEEEECTTSSCEEEEETTTEEEEECCSCC
T ss_pred             EEEEEEcCCCCEEEEEecCCeEEEEECCCC
Confidence            999999999999999999999999998754

>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.7e-34  Score=243.51  Aligned_cols=237  Identities=12%  Similarity=0.093  Sum_probs=186.5

Q ss_pred             EeCCCCCEEEEeeCCCeEEEEECCCCceeEEeeCCcccEEEEEECCCCCeEEEEecCCCeEEEEecCCcceeeeecCCCC
Q 021247           67 AAHPSGIIAASASLDSFVRVFDVDTNASIATLEASPSEVWQMQFDPKGTTLAVAGGGSASVKLWDTATWNLIATLSIPRP  146 (315)
Q Consensus        67 ~~~~~g~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~  146 (315)
                      .+.+++.++++|+.||+|++||+.+++.+..+.  ...|..+.++|.    +++++.|++|++|+......+..+  ...
T Consensus        43 ~~~~d~~~l~sg~~Dg~v~iwd~~~~~~~~~~~--~~~v~~~~~~~~----~~s~s~D~~i~~w~~~~~~~~~~~--~~~  114 (343)
T 3lrv_A           43 SMYYDKWVCMCRCEDGALHFTQLKDSKTITTIT--TPNPRTGGEHPA----IISRGPCNRLLLLYPGNQITILDS--KTN  114 (343)
T ss_dssp             SSSEEEEEEEEEEETTEEEEEEESSSSCEEEEE--EECCCTTCCCCS----EEEECSTTEEEEEETTTEEEEEET--TTC
T ss_pred             hhcCCCCEEEEECCCCcEEEEECCCCcEEEEEe--cCCceeeeeCCc----eEEecCCCeEEEEEccCceEEeec--CCc
Confidence            445678899999999999999999998877776  456777788887    678999999999987642211111  110


Q ss_pred             CCCCCCccCCCCcceEEEEECC--CCCEEEEecCCCcEEEEEcccceeeeeec-CCccceEEEEEcCCCCcEEEEEeCCC
Q 021247          147 EGLKPTDKSSSKKFVLSVAWSP--DGRRIACGSMDGTISVFDVTRAKFLHHLE-GHFMPVRSLVYSPVDPRVLFSASDDT  223 (315)
Q Consensus       147 ~~~~~~~~~~~~~~i~~~~~~~--~~~~l~~~s~dg~i~i~d~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~l~s~~~d~  223 (315)
                      . ........+...|.+++|+|  ++++|++++.||.|++||+++++...... .|...+.+++|+| ++.++++|+.|+
T Consensus       115 ~-~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~~i~~~~~~p-dg~~lasg~~dg  192 (343)
T 3lrv_A          115 K-VLREIEVDSANEIIYMYGHNEVNTEYFIWADNRGTIGFQSYEDDSQYIVHSAKSDVEYSSGVLHK-DSLLLALYSPDG  192 (343)
T ss_dssp             C-EEEEEECCCSSCEEEEECCC---CCEEEEEETTCCEEEEESSSSCEEEEECCCSSCCCCEEEECT-TSCEEEEECTTS
T ss_pred             c-eeEEeecCCCCCEEEEEcCCCCCCCEEEEEeCCCcEEEEECCCCcEEEEEecCCCCceEEEEECC-CCCEEEEEcCCC
Confidence            0 00001123445699999999  99999999999999999999888866553 4556899999999 678999999999


Q ss_pred             eEEEEeCCCCeeE-EEeec-ccccEEEEEEcCCCCeEEEEeCCCcEEEEecCccceehcccc---cccceE--EEEEeeC
Q 021247          224 HVHMYDAEGKSLV-TAMSG-HASWVLSVDASPDGAAITTGSSDRTVKLWDLNMRAAMQSMTN---HTDQVW--GVSFRPL  296 (315)
Q Consensus       224 ~i~~wd~~~~~~~-~~~~~-~~~~i~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~---~~~~v~--~~~~s~~  296 (315)
                      .|++||+++++.+ ..+.. |...|.+++|+|++.+|++++ |+.|++||++..+....+..   |...+.  +++|+|+
T Consensus       193 ~i~iwd~~~~~~~~~~~~~~h~~~v~~l~fs~~g~~l~s~~-~~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  271 (343)
T 3lrv_A          193 ILDVYNLSSPDQASSRFPVDEEAKIKEVKFADNGYWMVVEC-DQTVVCFDLRKDVGTLAYPTYTIPEFKTGTVTYDIDDS  271 (343)
T ss_dssp             CEEEEESSCTTSCCEECCCCTTSCEEEEEECTTSSEEEEEE-SSBEEEEETTSSTTCBSSCCCBC-----CCEEEEECTT
T ss_pred             EEEEEECCCCCCCccEEeccCCCCEEEEEEeCCCCEEEEEe-CCeEEEEEcCCCCcceeecccccccccccceEEEECCC
Confidence            9999999988776 67777 999999999999999999999 55999999998876555443   333443  6999999


Q ss_pred             CCEEEEEeC-CCcEEEeec
Q 021247          297 GGRVVSVSD-DKSISLYEY  314 (315)
Q Consensus       297 ~~~l~s~~~-d~~i~i~~~  314 (315)
                      |++|++++. |+.|+||++
T Consensus       272 g~~l~~~s~~d~~i~v~~~  290 (343)
T 3lrv_A          272 GKNMIAYSNESNSLTIYKF  290 (343)
T ss_dssp             SSEEEEEETTTTEEEEEEE
T ss_pred             CCEEEEecCCCCcEEEEEE
Confidence            999999998 999999987

>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}

Probab=100.00  E-value=1e-32  Score=233.94  Aligned_cols=252  Identities=17%  Similarity=0.222  Sum_probs=203.4

Q ss_pred             EcCCCCcceeeccccccceEEEEeCCC---CCEEEEeeCCCeEEEEECCC-Ccee-EEeeCCcccEEEEEECCCCCeEEE
Q 021247           45 WRPDDMQLERTNTGHCLGVVSVAAHPS---GIIAASASLDSFVRVFDVDT-NASI-ATLEASPSEVWQMQFDPKGTTLAV  119 (315)
Q Consensus        45 w~~~~~~~~~~~~~h~~~v~~~~~~~~---g~~l~s~~~d~~i~~w~~~~-~~~~-~~~~~~~~~v~~~~~~~~~~~~~~  119 (315)
                      |+....+....+.+|...|.+++|+|+   |.+|++++.|+.|++||+.+ +..+ ..+..|...|.+++|+|+++.+ +
T Consensus        24 ~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l-~  102 (368)
T 3mmy_A           24 DNHNPMKDIEVTSSPDDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQTIPKAQQMHTGPVLDVCWSDDGSKV-F  102 (368)
T ss_dssp             CSSCTTCCEECSSCCSSCEEEEEECCTTSSSEEEEEEETTSEEEEEEECTTSCEEEEEEEECSSCEEEEEECTTSSEE-E
T ss_pred             CCCCCcceeEeccCCCCceEEEEEcCCCCCceEEEEECCCCcEEEEEcCCCCceeEEEeccccCCEEEEEECcCCCEE-E
Confidence            444555666778899999999999999   69999999999999999997 5444 6778899999999999998865 5


Q ss_pred             EecCCCeEEEEecCCcceeeeecCCCCCCCCCCccCCCCcceEEEEE--CCCCCEEEEecCCCcEEEEEcccceeeeeec
Q 021247          120 AGGGSASVKLWDTATWNLIATLSIPRPEGLKPTDKSSSKKFVLSVAW--SPDGRRIACGSMDGTISVFDVTRAKFLHHLE  197 (315)
Q Consensus       120 ~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~--~~~~~~l~~~s~dg~i~i~d~~~~~~~~~~~  197 (315)
                      +++.|+.|++||+++.+.+...              .+...|.+++|  +|++++|++++.|+.|++||+++++.+..+.
T Consensus       103 s~~~dg~v~iwd~~~~~~~~~~--------------~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~  168 (368)
T 3mmy_A          103 TASCDKTAKMWDLSSNQAIQIA--------------QHDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDTRSSNPMMVLQ  168 (368)
T ss_dssp             EEETTSEEEEEETTTTEEEEEE--------------ECSSCEEEEEEEECSSCEEEEEEETTSEEEEECSSCSSCSEEEE
T ss_pred             EEcCCCcEEEEEcCCCCceeec--------------cccCceEEEEEEeCCCCCEEEEccCCCcEEEEECCCCcEEEEEe
Confidence            7889999999999987765433              24456999999  8999999999999999999999998888887


Q ss_pred             CCccceEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCeeEEEe--ecccccEEEEEEcCCCCe----EEEEeCCCcEEEEe
Q 021247          198 GHFMPVRSLVYSPVDPRVLFSASDDTHVHMYDAEGKSLVTAM--SGHASWVLSVDASPDGAA----ITTGSSDRTVKLWD  271 (315)
Q Consensus       198 ~~~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~--~~~~~~i~~~~~~~~~~~----l~s~~~d~~i~iwd  271 (315)
                      .+. .+.++.+.+   ..+++++.++.+.+|+.+........  ..+...+..+.+.++...    +++++.|+.|++|+
T Consensus       169 ~~~-~~~~~~~~~---~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~i~~  244 (368)
T 3mmy_A          169 LPE-RCYCADVIY---PMAVVATAERGLIVYQLENQPSEFRRIESPLKHQHRCVAIFKDKQNKPTGFALGSIEGRVAIHY  244 (368)
T ss_dssp             CSS-CEEEEEEET---TEEEEEEGGGCEEEEECSSSCEEEEECCCSCSSCEEEEEEEECTTSCEEEEEEEETTSEEEEEE
T ss_pred             cCC-CceEEEecC---CeeEEEeCCCcEEEEEeccccchhhhccccccCCCceEEEcccCCCCCCeEEEecCCCcEEEEe
Confidence            665 566666654   37888899999999999875433222  223344555555555444    99999999999999


Q ss_pred             cCcc---ceehccccccc------------ceEEEEEeeCCCEEEEEeCCCcEEEeecC
Q 021247          272 LNMR---AAMQSMTNHTD------------QVWGVSFRPLGGRVVSVSDDKSISLYEYS  315 (315)
Q Consensus       272 ~~~~---~~~~~~~~~~~------------~v~~~~~s~~~~~l~s~~~d~~i~i~~~~  315 (315)
                      ++..   .....+..|..            .|++++|+|++++|++++.||.|+|||+.
T Consensus       245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~  303 (368)
T 3mmy_A          245 INPPNPAKDNFTFKCHRSNGTNTSAPQDIYAVNGIAFHPVHGTLATVGSDGRFSFWDKD  303 (368)
T ss_dssp             SSCSCHHHHSEEEECSEEC----CCCEEECCEEEEEECTTTCCEEEEETTSCEEEEETT
T ss_pred             cCCCCccccceeeeeeecccccccccccccceEEEEEecCCCEEEEEccCCeEEEEECC
Confidence            9876   44555666655            79999999999999999999999999963

>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3

Probab=100.00  E-value=6.9e-32  Score=231.31  Aligned_cols=281  Identities=16%  Similarity=0.211  Sum_probs=222.5

Q ss_pred             ccccceEEEEEeecCCCCCcEEEEeeCCCcEEEEcCCCCcceeeccccccceEEEEeCCCCCEEE-EeeCCCeEEEEECC
Q 021247           12 AHEESVWAVTWVPATETRPALLLTGSLDETVKLWRPDDMQLERTNTGHCLGVVSVAAHPSGIIAA-SASLDSFVRVFDVD   90 (315)
Q Consensus        12 ~h~~~v~~v~~~~~~~~~~~~l~sgs~d~~v~~w~~~~~~~~~~~~~h~~~v~~~~~~~~g~~l~-s~~~d~~i~~w~~~   90 (315)
                      .| ..+.+++|+|.+..   ++++++.|+.|++||..+.+....+..+. .+.+++|+|+|.+++ +++.|+.|++||+.
T Consensus        30 ~~-~~~~~~~~s~dg~~---l~~~~~~d~~i~v~d~~~~~~~~~~~~~~-~v~~~~~spdg~~l~~~~~~~~~v~v~d~~  104 (391)
T 1l0q_A           30 VG-SNPMGAVISPDGTK---VYVANAHSNDVSIIDTATNNVIATVPAGS-SPQGVAVSPDGKQVYVTNMASSTLSVIDTT  104 (391)
T ss_dssp             CS-SSEEEEEECTTSSE---EEEEEGGGTEEEEEETTTTEEEEEEECSS-SEEEEEECTTSSEEEEEETTTTEEEEEETT
T ss_pred             cC-CCcceEEECCCCCE---EEEECCCCCeEEEEECCCCeEEEEEECCC-CccceEECCCCCEEEEEECCCCEEEEEECC
Confidence            44 46899999997752   45788899999999998888877766554 899999999999775 55567999999999


Q ss_pred             CCceeEEeeCCcccEEEEEECCCCCeEEEEecCCCeEEEEecCCcceeeeecCCCCCCCCCCccCCCCcceEEEEECCCC
Q 021247           91 TNASIATLEASPSEVWQMQFDPKGTTLAVAGGGSASVKLWDTATWNLIATLSIPRPEGLKPTDKSSSKKFVLSVAWSPDG  170 (315)
Q Consensus        91 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~  170 (315)
                      +++.+..+..+ ..+..++|+|+++.++++++.++.|++||+++++.+..+...              ..+..++|+|++
T Consensus       105 ~~~~~~~~~~~-~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~--------------~~~~~~~~~~dg  169 (391)
T 1l0q_A          105 SNTVAGTVKTG-KSPLGLALSPDGKKLYVTNNGDKTVSVINTVTKAVINTVSVG--------------RSPKGIAVTPDG  169 (391)
T ss_dssp             TTEEEEEEECS-SSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECC--------------SSEEEEEECTTS
T ss_pred             CCeEEEEEeCC-CCcceEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEecC--------------CCcceEEECCCC
Confidence            99888777654 468999999999988888899999999999988877666432              126799999999


Q ss_pred             CEE-EEecCCCcEEEEEcccceeeeeecCCccceEEEEEcCCCCcEEEEEe---CCCeEEEEeCCCCeeEEEeecccccE
Q 021247          171 RRI-ACGSMDGTISVFDVTRAKFLHHLEGHFMPVRSLVYSPVDPRVLFSAS---DDTHVHMYDAEGKSLVTAMSGHASWV  246 (315)
Q Consensus       171 ~~l-~~~s~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~---~d~~i~~wd~~~~~~~~~~~~~~~~i  246 (315)
                      +++ ++++.++.|++||+++++....+.. ...+.+++|+|. ++++++++   .++.|++||+++++.+..+..|. .+
T Consensus       170 ~~l~~~~~~~~~v~~~d~~~~~~~~~~~~-~~~~~~~~~~~~-g~~l~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~-~~  246 (391)
T 1l0q_A          170 TKVYVANFDSMSISVIDTVTNSVIDTVKV-EAAPSGIAVNPE-GTKAYVTNVDKYFNTVSMIDTGTNKITARIPVGP-DP  246 (391)
T ss_dssp             SEEEEEETTTTEEEEEETTTTEEEEEEEC-SSEEEEEEECTT-SSEEEEEEECSSCCEEEEEETTTTEEEEEEECCS-SE
T ss_pred             CEEEEEeCCCCEEEEEECCCCeEEEEEec-CCCccceEECCC-CCEEEEEecCcCCCcEEEEECCCCeEEEEEecCC-Cc
Confidence            887 6778899999999999887776654 457889999994 55566555   78999999999988888777665 47


Q ss_pred             EEEEEcCCCCeE-EEEeCCCcEEEEecCccceehcccccccceE---------------EEEEeeCC----------CEE
Q 021247          247 LSVDASPDGAAI-TTGSSDRTVKLWDLNMRAAMQSMTNHTDQVW---------------GVSFRPLG----------GRV  300 (315)
Q Consensus       247 ~~~~~~~~~~~l-~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~---------------~~~~s~~~----------~~l  300 (315)
                      .+++|+|+++.+ ++++.|+.|++||+.+++.+..+..|..+..               ...|+.+.          -.+
T Consensus       247 ~~~~~s~dg~~l~~s~~~d~~v~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~fs~~~~~~~~~~~~~~~~  326 (391)
T 1l0q_A          247 AGIAVTPDGKKVYVALSFXNTVSVIDTATNTITATMAVGKNPYASGQFIGSIPVQPVYPSADFKSNITSGYIFLSEPVQF  326 (391)
T ss_dssp             EEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECSSSEECCSSCEEECSSCCCCCBCCEEESCCSSEEETTCCEEE
T ss_pred             cEEEEccCCCEEEEEcCCCCEEEEEECCCCcEEEEEECCcCCCccceeeecccccccccccccccccccccccccceEEE
Confidence            899999999877 6778899999999999888777665543311               12233322          246


Q ss_pred             EEEeCCCcEEEeecC
Q 021247          301 VSVSDDKSISLYEYS  315 (315)
Q Consensus       301 ~s~~~d~~i~i~~~~  315 (315)
                      ...+.|.++++|++.
T Consensus       327 ~~~~~~~~~~~W~~~  341 (391)
T 1l0q_A          327 TDLSKDATEWKWDFG  341 (391)
T ss_dssp             EECCBSCSEEEEECS
T ss_pred             EeCCCCceEEEEECC
Confidence            677788999999973

>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A

Probab=100.00  E-value=4.9e-31  Score=221.59  Aligned_cols=211  Identities=22%  Similarity=0.360  Sum_probs=176.0

Q ss_pred             eeccccccceEEEEeCCCCCEEEEeeCCCeEEEEECCCC----ceeEEeeCCcccEEEEEECCC--CCeEEEEecCCCeE
Q 021247           54 RTNTGHCLGVVSVAAHPSGIIAASASLDSFVRVFDVDTN----ASIATLEASPSEVWQMQFDPK--GTTLAVAGGGSASV  127 (315)
Q Consensus        54 ~~~~~h~~~v~~~~~~~~g~~l~s~~~d~~i~~w~~~~~----~~~~~~~~~~~~v~~~~~~~~--~~~~~~~~~~d~~i  127 (315)
                      ..+.+|...|.+++|+|++.+|++++.|+.|++||+.++    +....+..|..+|.+++|+|.  +. ++++++.|++|
T Consensus         5 ~~~~gH~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~d~~-~l~s~~~dg~v   83 (351)
T 3f3f_A            5 PFDSGHDDLVHDVVYDFYGRHVATCSSDQHIKVFKLDKDTSNWELSDSWRAHDSSIVAIDWASPEYGR-IIASASYDKTV   83 (351)
T ss_dssp             CEECCCSSCEEEEEECSSSSEEEEEETTSEEEEEEECSSSCCEEEEEEEECCSSCEEEEEECCGGGCS-EEEEEETTSCE
T ss_pred             ccCcccccceeEEEEcCCCCEEEEeeCCCeEEEEECCCCCCcceecceeccCCCcEEEEEEcCCCCCC-EEEEEcCCCeE
Confidence            456789999999999999999999999999999999876    355667889999999999994  55 55788899999


Q ss_pred             EEEecCCcce---------eeeecCCCCCCCCCCccCCCCcceEEEEECCC--CCEEEEecCCCcEEEEEcccceeeeee
Q 021247          128 KLWDTATWNL---------IATLSIPRPEGLKPTDKSSSKKFVLSVAWSPD--GRRIACGSMDGTISVFDVTRAKFLHHL  196 (315)
Q Consensus       128 ~~~d~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~--~~~l~~~s~dg~i~i~d~~~~~~~~~~  196 (315)
                      ++||++.++.         +..+             ..+...|.+++|+|+  +++|++++.|+.|++||+++++.+..+
T Consensus        84 ~vwd~~~~~~~~~~~~~~~~~~~-------------~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~  150 (351)
T 3f3f_A           84 KLWEEDPDQEECSGRRWNKLCTL-------------NDSKGSLYSVKFAPAHLGLKLACLGNDGILRLYDALEPSDLRSW  150 (351)
T ss_dssp             EEEEECTTSCTTSSCSEEEEEEE-------------CCCSSCEEEEEECCGGGCSEEEEEETTCEEEEEECSSTTCTTCC
T ss_pred             EEEecCCCcccccccCcceeeee-------------cccCCceeEEEEcCCCCCcEEEEecCCCcEEEecCCChHHhccc
Confidence            9999987532         2222             234566999999999  999999999999999999877644332


Q ss_pred             c-------------CCccceEEEEEcCC--CCcEEEEEeCCCeEEEEeCCCCee--EEEeecccccEEEEEEcCCC----
Q 021247          197 E-------------GHFMPVRSLVYSPV--DPRVLFSASDDTHVHMYDAEGKSL--VTAMSGHASWVLSVDASPDG----  255 (315)
Q Consensus       197 ~-------------~~~~~v~~~~~~~~--~~~~l~s~~~d~~i~~wd~~~~~~--~~~~~~~~~~i~~~~~~~~~----  255 (315)
                      .             .|...+.++.|+|.  ++.++++++.|+.+.+|+...+..  +..+.+|...|.+++|+|++    
T Consensus       151 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~p~~~~~~  230 (351)
T 3f3f_A          151 TLTSEMKVLSIPPANHLQSDFCLSWCPSRFSPEKLAVSALEQAIIYQRGKDGKLHVAAKLPGHKSLIRSISWAPSIGRWY  230 (351)
T ss_dssp             EEEEEEESCSCCCSSCSCCCEEEEECCCSSSCCEEEEEETTEEEEEEECTTSCEEEEEECCCCCSCEEEEEECCCSSCSS
T ss_pred             cccccccccccccCCcccceeEEEeccCCCCCcEEEEecCCCcEEEEccCCCceeeeeecCCCCcceeEEEECCCCCCcc
Confidence            2             57788999999985  478999999999998888877654  66677899999999999998    


Q ss_pred             CeEEEEeCCCcEEEEecCcccee
Q 021247          256 AAITTGSSDRTVKLWDLNMRAAM  278 (315)
Q Consensus       256 ~~l~s~~~d~~i~iwd~~~~~~~  278 (315)
                      ++|++++.||.|++||++.+...
T Consensus       231 ~~l~s~~~dg~i~iwd~~~~~~~  253 (351)
T 3f3f_A          231 QLIATGCKDGRIRIFKITEKLSP  253 (351)
T ss_dssp             EEEEEEETTSCEEEEEEEECC--
T ss_pred             eEEEEEcCCCeEEEEeCCCCcCc
Confidence            89999999999999999875443

>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*

Probab=100.00  E-value=2.1e-29  Score=224.17  Aligned_cols=280  Identities=13%  Similarity=0.146  Sum_probs=223.8

Q ss_pred             eEEEEEeecCCCCCcEEEEeeCCCcEEEEcC--CCCcceeeccccccceEEEEeCC----CCCEEEEee-CCCeEEEEEC
Q 021247           17 VWAVTWVPATETRPALLLTGSLDETVKLWRP--DDMQLERTNTGHCLGVVSVAAHP----SGIIAASAS-LDSFVRVFDV   89 (315)
Q Consensus        17 v~~v~~~~~~~~~~~~l~sgs~d~~v~~w~~--~~~~~~~~~~~h~~~v~~~~~~~----~g~~l~s~~-~d~~i~~w~~   89 (315)
                      +.+++|+|+++    +|++++.|++|++||.  .+.+....+. +...+..+.|+|    +|+++++++ .+++|.+||.
T Consensus       181 ~~~v~~spdg~----~l~v~~~d~~V~v~D~~~~t~~~~~~i~-~g~~p~~va~sp~~~~dg~~l~v~~~~~~~v~v~D~  255 (543)
T 1nir_A          181 VHISRMSASGR----YLLVIGRDARIDMIDLWAKEPTKVAEIK-IGIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDG  255 (543)
T ss_dssp             EEEEEECTTSC----EEEEEETTSEEEEEETTSSSCEEEEEEE-CCSEEEEEEECCSTTCTTTEEEEEEEESSEEEEEET
T ss_pred             cceEEECCCCC----EEEEECCCCeEEEEECcCCCCcEEEEEe-cCCCcceEEeCCCcCCCCCEEEEEEccCCeEEEEec
Confidence            88999999876    6999999999999999  6777766665 345679999999    999998887 5899999999


Q ss_pred             CCCceeEEeeCC----------c-ccEEEEEECCCCCeEEEEecCCCeEEEEecCCcceeeeecCCCCCCCCCCccCCCC
Q 021247           90 DTNASIATLEAS----------P-SEVWQMQFDPKGTTLAVAGGGSASVKLWDTATWNLIATLSIPRPEGLKPTDKSSSK  158 (315)
Q Consensus        90 ~~~~~~~~~~~~----------~-~~v~~~~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~  158 (315)
                      .+++++.++...          + ..+..+.++|++..++++...+++|.+||..+.+.+....++            +.
T Consensus       256 ~t~~~~~~i~~~g~~~~~~~~~~~~~v~~i~~s~~~~~~~vs~~~~g~i~vvd~~~~~~l~~~~i~------------~~  323 (543)
T 1nir_A          256 ETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKETGKVLLVNYKDIDNLTVTSIG------------AA  323 (543)
T ss_dssp             TTCCEEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEECTTSSSCEEEEEE------------CC
T ss_pred             cccccceeecccCcccCccccccCCceEEEEECCCCCEEEEEECCCCeEEEEEecCCCcceeEEec------------cC
Confidence            999988877642          2 268899999999989899999999999999876544321111            12


Q ss_pred             cceEEEEECCCCCEEEE-ecCCCcEEEEEcccceeeeeecC----CccceEEEEEcCCCCcEEEEEe-CCCeEEEEeCCC
Q 021247          159 KFVLSVAWSPDGRRIAC-GSMDGTISVFDVTRAKFLHHLEG----HFMPVRSLVYSPVDPRVLFSAS-DDTHVHMYDAEG  232 (315)
Q Consensus       159 ~~i~~~~~~~~~~~l~~-~s~dg~i~i~d~~~~~~~~~~~~----~~~~v~~~~~~~~~~~~l~s~~-~d~~i~~wd~~~  232 (315)
                      .++..++|+|+|++|++ +..++.|.+||+.+++.+..+..    |......+ ++|.++.+++++. .|++|.+||..+
T Consensus       324 ~~~~~~~~spdg~~l~va~~~~~~v~v~D~~tg~l~~~i~~g~~ph~g~g~~~-~~p~~g~~~~s~~~~d~~V~v~d~~~  402 (543)
T 1nir_A          324 PFLHDGGWDSSHRYFMTAANNSNKVAVIDSKDRRLSALVDVGKTPHPGRGANF-VHPKYGPVWSTSHLGDGSISLIGTDP  402 (543)
T ss_dssp             SSCCCEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSBCCTTCEEE-EETTTEEEEEEEBSSSSEEEEEECCT
T ss_pred             cCccCceECCCCCEEEEEecCCCeEEEEECCCCeEEEeeccCCCCCCCCCccc-CCCCCccEEEeccCCCceEEEEEeCC
Confidence            23668999999998765 45688999999999998877764    43333333 4675577778776 689999999987


Q ss_pred             -------CeeEEEeecccccEEEEEEcCCCCeEEEEe-------CCCcEEEEecCcccee-hcc--------cccccceE
Q 021247          233 -------KSLVTAMSGHASWVLSVDASPDGAAITTGS-------SDRTVKLWDLNMRAAM-QSM--------TNHTDQVW  289 (315)
Q Consensus       233 -------~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~-------~d~~i~iwd~~~~~~~-~~~--------~~~~~~v~  289 (315)
                             .+++..+..|...+..+.++|+++.|++++       .+++|.+||+++++.. ..+        ..+...++
T Consensus       403 ~~~~~~~~~~v~~l~~~g~~~~~v~~~pdg~~l~v~~~~~~~~~~~~~v~v~d~~~~~~~~~~~~v~~~~~~~~~~~~~~  482 (543)
T 1nir_A          403 KNHPQYAWKKVAELQGQGGGSLFIKTHPKSSHLYVDTTFNPDARISQSVAVFDLKNLDAKYQVLPIAEWADLGEGAKRVV  482 (543)
T ss_dssp             TTCTTTBTSEEEEEECSCSCCCCEECCTTCCEEEECCTTCSSHHHHTCEEEEETTCTTSCCEEECHHHHHCCCSSCCEEE
T ss_pred             CCCchhcCeEEEEEEcCCCCceEEEcCCCCCcEEEecCCCCCcccCceEEEEECCCCCCCeEEeechhhcccCCCCCceE
Confidence                   788999999988888999999999999987       2679999999987765 332        34567899


Q ss_pred             EEEEeeCCCEEEEE-----eCCCcEEEeec
Q 021247          290 GVSFRPLGGRVVSV-----SDDKSISLYEY  314 (315)
Q Consensus       290 ~~~~s~~~~~l~s~-----~~d~~i~i~~~  314 (315)
                      .+.|+|+|+.|+..     +.|++|.|||.
T Consensus       483 ~~~~~~~g~~~~~s~~~~~~~~~~i~v~D~  512 (543)
T 1nir_A          483 QPEYNKRGDEVWFSVWNGKNDSSALVVVDD  512 (543)
T ss_dssp             EEEECSSSSEEEEEEECCTTSCCEEEEEET
T ss_pred             eccCCCCCCEEEEEeecCCCCCCeEEEEEC
Confidence            99999999998754     24799999985

>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A

Probab=99.98  E-value=1.9e-30  Score=212.35  Aligned_cols=244  Identities=13%  Similarity=0.097  Sum_probs=171.1

Q ss_pred             hhccccceEEEEEeecCCCCCcEEEEee-CC-CcEEEE--cCCCC--cceeeccccccceEEEEeCCCCCEEEEee--CC
Q 021247           10 ENAHEESVWAVTWVPATETRPALLLTGS-LD-ETVKLW--RPDDM--QLERTNTGHCLGVVSVAAHPSGIIAASAS--LD   81 (315)
Q Consensus        10 ~~~h~~~v~~v~~~~~~~~~~~~l~sgs-~d-~~v~~w--~~~~~--~~~~~~~~h~~~v~~~~~~~~g~~l~s~~--~d   81 (315)
                      ...|+.+|..|.+.|+..+  .+.++=+ .. +.|+..  .+++.  +......+|...+..+   ++|+++.+++  .|
T Consensus        82 ~~~~~~~v~~~~~~~~~~~--~~~~~~~~~~~~~v~sla~spd~~~~~~~l~s~g~~~~v~~l---~~g~lv~ss~~g~d  156 (356)
T 2w18_A           82 WHFAEVPVLQIVPVPDVYN--LVCVALGNLEIREIRALFCSSDDESEKQVLLKSGNIKAVLGL---TKRRLVSSSGTLSD  156 (356)
T ss_dssp             EECCSSCEEEECCCTTCCS--CEEEEECSSSEEEEEEECC------CCEEEEEEEEEEEEEEE---TTTEEEEEESSSTT
T ss_pred             EeccCceeEEEEEcCcccc--eeeeeeccccccceEEEEECCCccccccEEEeCCCeEEEEec---CCCcEEEecccCCC
Confidence            4578888999998886543  1222211 11 112221  22211  1111223455555554   5676666643  59


Q ss_pred             CeEEEEEC-CCCceeEEeeCCcccEEEEEECC---CCCeEEEEecCCCeEEEEecCCcceeeeecCCCCCCCCCCccCCC
Q 021247           82 SFVRVFDV-DTNASIATLEASPSEVWQMQFDP---KGTTLAVAGGGSASVKLWDTATWNLIATLSIPRPEGLKPTDKSSS  157 (315)
Q Consensus        82 ~~i~~w~~-~~~~~~~~~~~~~~~v~~~~~~~---~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~  157 (315)
                      +.|++|++ .+++.+..+..|...+..++|+|   ++. ++++++.|++|++||+++++.+.++..+..          +
T Consensus       157 ~~V~~~~~s~dG~~~~s~~~~~~~v~~l~fs~~~g~~~-~LaSgS~D~TIkIWDl~TGk~l~tL~g~~~----------~  225 (356)
T 2w18_A          157 QQVEVMTFAEDGGGKENQFLMPPEETILTFAEVQGMQE-ALLGTTIMNNIVIWNLKTGQLLKKMHIDDS----------Y  225 (356)
T ss_dssp             CEEEEEEECTTSCEEEEEEECCCSSCEEEEEEEETSTT-EEEEEETTSEEEEEETTTCCEEEEEECCC------------
T ss_pred             CcEEEEEECCCCceeeeeccCCCceeeEEeeccCCCCc-eEEEecCCCcEEEEECCCCcEEEEEcCCCc----------c
Confidence            99999999 44777778888888888888888   444 668899999999999999999888753211          1


Q ss_pred             CcceEEEEECCCCCEE------------EEecCCCcEEEEEcccceeeeee-----cCCccceEEEEEcCCCCcEEEEEe
Q 021247          158 KKFVLSVAWSPDGRRI------------ACGSMDGTISVFDVTRAKFLHHL-----EGHFMPVRSLVYSPVDPRVLFSAS  220 (315)
Q Consensus       158 ~~~i~~~~~~~~~~~l------------~~~s~dg~i~i~d~~~~~~~~~~-----~~~~~~v~~~~~~~~~~~~l~s~~  220 (315)
                      ...+.+++|+|+|.++            ++|+.|++|++||+.+++.+..+     .+|...+.+..++   +.++++++
T Consensus       226 v~~v~~vafSpdG~~lvs~s~~~~~w~laSGs~D~tIklWd~~tgk~l~v~~~~~p~Gh~~~~lsg~~s---g~~lASgS  302 (356)
T 2w18_A          226 QASVCHKAYSEMGLLFIVLSHPCAKESESLRSPVFQLIVINPKTTLSVGVMLYCLPPGQAGRFLEGDVK---DHCAAAIL  302 (356)
T ss_dssp             -CCCEEEEEEETTEEEEEEC------------CCEEEEEEETTTTEEEEEEEECCCTTCCCCEEEEEEE---TTEEEEEE
T ss_pred             eeeeEEEEECCCCCEEEEeccCCCcceeeccCCCcEEEEEECCCCEEEEEEEeeccCCCcceeEccccC---CCEEEEEc
Confidence            2247788999999876            56788999999999999877654     3665555444443   56899999


Q ss_pred             CCCeEEEEeCCCCeeEEEeecccccEE-EEEEcCCCCeEEEEeCCCcEEEEec
Q 021247          221 DDTHVHMYDAEGKSLVTAMSGHASWVL-SVDASPDGAAITTGSSDRTVKLWDL  272 (315)
Q Consensus       221 ~d~~i~~wd~~~~~~~~~~~~~~~~i~-~~~~~~~~~~l~s~~~d~~i~iwd~  272 (315)
                      .|++|++||+++++++..+.+|...+. .++|+|+|++|++|+.|++|+|||+
T Consensus       303 ~DgTIkIWDl~tGk~l~tL~gH~~~vvs~vafSPDG~~LaSGS~D~TIklWd~  355 (356)
T 2w18_A          303 TSGTIAIWDLLLGQCTALLPPVSDQHWSFVKWSGTDSHLLAGQKDGNIFVYHY  355 (356)
T ss_dssp             TTSCEEEEETTTCSEEEEECCC--CCCCEEEECSSSSEEEEECTTSCEEEEEE
T ss_pred             CCCcEEEEECCCCcEEEEecCCCCCeEEEEEECCCCCEEEEEECCCcEEEecC
Confidence            999999999999999999999987655 5899999999999999999999985

>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A

Probab=99.98  E-value=3.6e-30  Score=222.36  Aligned_cols=278  Identities=18%  Similarity=0.158  Sum_probs=208.5

Q ss_pred             ccceEEEEEeecCCCCCcEEEEee----CCC----cEEEEcC--CCCcce--eeccccccceEEEEeCC-----------
Q 021247           14 EESVWAVTWVPATETRPALLLTGS----LDE----TVKLWRP--DDMQLE--RTNTGHCLGVVSVAAHP-----------   70 (315)
Q Consensus        14 ~~~v~~v~~~~~~~~~~~~l~sgs----~d~----~v~~w~~--~~~~~~--~~~~~h~~~v~~~~~~~-----------   70 (315)
                      ...++..+|.+.+.   .++++|+    .||    .|++||.  .+.+..  ..+.+|...+..+++++           
T Consensus        62 ~~~~~~~~w~~~g~---~~~~~g~~~~~~~G~~~~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~g~  138 (415)
T 2hqs_A           62 AQEVQPAAWSALGI---DAVVVGQVTPNPDGSYNVAYQLVDTGGAPGTVLAQNSYKVNKQWLRYAGHTASDEVFEKLTGI  138 (415)
T ss_dssp             GGGCCHHHHHTTTC---CEEEEEEEEECTTSCEEEEEEEEECSSSTTCEEEEEEEEECGGGHHHHHHHHHHHHHHHHHSS
T ss_pred             ccCcCHHHHHhcCC---CEEEEEEEEECCCCeEEEEEEEEeCCCCCCCEEeeeEEEcChhHHHHHHHHHHHHHHHHHcCC
Confidence            34677777877654   3677887    467    8999999  777755  44677777666665543           


Q ss_pred             ---CCCEEEEeeCC------CeEEEEECCCCceeEEeeCCcccEEEEEECCCCCeEEEEecCC--CeEEEEecCCcceee
Q 021247           71 ---SGIIAASASLD------SFVRVFDVDTNASIATLEASPSEVWQMQFDPKGTTLAVAGGGS--ASVKLWDTATWNLIA  139 (315)
Q Consensus        71 ---~g~~l~s~~~d------~~i~~w~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d--~~i~~~d~~~~~~~~  139 (315)
                         .+..++.++.+      +.|++||+.. .....+..+...+.+++|+|+++.+++++..+  ..|++||+.+++...
T Consensus       139 ~~~~~~~l~~~s~~~~~~~~~~i~i~d~~g-~~~~~l~~~~~~v~~~~~Spdg~~la~~s~~~~~~~i~~~d~~tg~~~~  217 (415)
T 2hqs_A          139 KGAFRTRIAYVVQTNGGQFPYELRVSDYDG-YNQFVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQ  217 (415)
T ss_dssp             CCCTTCEEEEEEECSSSSCCEEEEEEETTS-CSCEEEEEESSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEEE
T ss_pred             CCcCCCEEEEEEecCCCCccceEEEEcCCC-CCCEEEeCCCCcceeeEEcCCCCEEEEEEecCCCcEEEEEECCCCcEEE
Confidence               25566655554      7999999975 44566677888999999999999876654332  499999998876543


Q ss_pred             eecCCCCCCCCCCccCCCCcceEEEEECCCCCEEE-EecCCCc--EEEEEcccceeeeeecCCccceEEEEEcCCCCcEE
Q 021247          140 TLSIPRPEGLKPTDKSSSKKFVLSVAWSPDGRRIA-CGSMDGT--ISVFDVTRAKFLHHLEGHFMPVRSLVYSPVDPRVL  216 (315)
Q Consensus       140 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~-~~s~dg~--i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l  216 (315)
                      ..              .+...+.+++|+|+|++|+ +++.++.  |++||+.+++. ..+..|...+.++.|+| +++.|
T Consensus       218 l~--------------~~~~~~~~~~~spdg~~la~~~~~~g~~~i~~~d~~~~~~-~~l~~~~~~~~~~~~sp-dg~~l  281 (415)
T 2hqs_A          218 VA--------------SFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQI-RQVTDGRSNNTEPTWFP-DSQNL  281 (415)
T ss_dssp             EE--------------CCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCE-EECCCCSSCEEEEEECT-TSSEE
T ss_pred             ee--------------cCCCcccCEEEcCCCCEEEEEEecCCCceEEEEECCCCCE-EeCcCCCCcccceEECC-CCCEE
Confidence            22              1223488999999999887 6666654  99999988765 56677888899999999 55666


Q ss_pred             EEEeC-CC--eEEEEeCCCCeeEEEeecccccEEEEEEcCCCCeEEEEeCC---CcEEEEecCccceehcccccccceEE
Q 021247          217 FSASD-DT--HVHMYDAEGKSLVTAMSGHASWVLSVDASPDGAAITTGSSD---RTVKLWDLNMRAAMQSMTNHTDQVWG  290 (315)
Q Consensus       217 ~s~~~-d~--~i~~wd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~d---~~i~iwd~~~~~~~~~~~~~~~~v~~  290 (315)
                      +.++. ++  .|++||..+++. ..+..+...+.+++|+|+|++|++++.+   ..|++||+.+++.. .+..+. .+.+
T Consensus       282 ~~~s~~~g~~~i~~~d~~~~~~-~~l~~~~~~~~~~~~spdG~~l~~~~~~~g~~~i~~~d~~~~~~~-~l~~~~-~~~~  358 (415)
T 2hqs_A          282 AFTSDQAGRPQVYKVNINGGAP-QRITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQ-VLSSTF-LDET  358 (415)
T ss_dssp             EEEECTTSSCEEEEEETTSSCC-EECCCSSSEEEEEEECTTSSEEEEEEECSSCEEEEEEETTTCCEE-ECCCSS-SCEE
T ss_pred             EEEECCCCCcEEEEEECCCCCE-EEEecCCCcccCeEECCCCCEEEEEECcCCceEEEEEECCCCCEE-EecCCC-CcCC
Confidence            65554 45  688889887764 3445567788999999999999888764   58999999987653 344554 8899


Q ss_pred             EEEeeCCCEEEEEeCCC---cEEEeec
Q 021247          291 VSFRPLGGRVVSVSDDK---SISLYEY  314 (315)
Q Consensus       291 ~~~s~~~~~l~s~~~d~---~i~i~~~  314 (315)
                      ++|+|+|++|++++.++   .|.+||+
T Consensus       359 ~~~spdg~~l~~~s~~~~~~~l~~~d~  385 (415)
T 2hqs_A          359 PSLAPNGTMVIYSSSQGMGSVLNLVST  385 (415)
T ss_dssp             EEECTTSSEEEEEEEETTEEEEEEEET
T ss_pred             eEEcCCCCEEEEEEcCCCccEEEEEEC
Confidence            99999999999888877   7888886

>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}

Probab=99.97  E-value=8.6e-29  Score=214.88  Aligned_cols=244  Identities=14%  Similarity=0.144  Sum_probs=200.9

Q ss_pred             hhhccccceEEEEEeecCCCCCcEEEEeeCCCcEEEEcCCCCcceeeccccccceEEEEeCCCCCEEE-EeeCCCeEEEE
Q 021247            9 VENAHEESVWAVTWVPATETRPALLLTGSLDETVKLWRPDDMQLERTNTGHCLGVVSVAAHPSGIIAA-SASLDSFVRVF   87 (315)
Q Consensus         9 ~~~~h~~~v~~v~~~~~~~~~~~~l~sgs~d~~v~~w~~~~~~~~~~~~~h~~~v~~~~~~~~g~~l~-s~~~d~~i~~w   87 (315)
                      ...+|...|++++|.|.+.    ++++++.|+.|++|+.++.+....+..|...+.+++++|++..++ +++.|+.|++|
T Consensus       164 ~~~~~~~~v~~~~~~~~~~----~~~s~~~d~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~  239 (433)
T 3bws_A          164 KYKKKLGFVETISIPEHNE----LWVSQMQANAVHVFDLKTLAYKATVDLTGKWSKILLYDPIRDLVYCSNWISEDISVI  239 (433)
T ss_dssp             HHHTTCCEEEEEEEGGGTE----EEEEEGGGTEEEEEETTTCCEEEEEECSSSSEEEEEEETTTTEEEEEETTTTEEEEE
T ss_pred             cccccCCceeEEEEcCCCE----EEEEECCCCEEEEEECCCceEEEEEcCCCCCeeEEEEcCCCCEEEEEecCCCcEEEE
Confidence            3468999999999987654    799999999999999998888888888889999999999998775 55589999999


Q ss_pred             ECCCCceeEEeeCCcccEEEEEECCCCCeEEEEec-------CCCeEEEEecCCcceeeeecCCCCCCCCCCccCCCCcc
Q 021247           88 DVDTNASIATLEASPSEVWQMQFDPKGTTLAVAGG-------GSASVKLWDTATWNLIATLSIPRPEGLKPTDKSSSKKF  160 (315)
Q Consensus        88 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~-------~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  160 (315)
                      |+.+++.+..+..+ ..+..++|+|+++.+++++.       .|+.|++||+++++.+..+..              ...
T Consensus       240 d~~~~~~~~~~~~~-~~~~~~~~~~~g~~l~~~~~~~~~~~~~dg~i~~~d~~~~~~~~~~~~--------------~~~  304 (433)
T 3bws_A          240 DRKTKLEIRKTDKI-GLPRGLLLSKDGKELYIAQFSASNQESGGGRLGIYSMDKEKLIDTIGP--------------PGN  304 (433)
T ss_dssp             ETTTTEEEEECCCC-SEEEEEEECTTSSEEEEEEEESCTTCSCCEEEEEEETTTTEEEEEEEE--------------EEC
T ss_pred             ECCCCcEEEEecCC-CCceEEEEcCCCCEEEEEECCCCccccCCCeEEEEECCCCcEEeeccC--------------CCC
Confidence            99998887777654 45899999999987766553       578999999998776655421              123


Q ss_pred             eEEEEECCCCCEE-EEecCCCcEEEEEcccceeeeeecCCccceEEEEEcCCCCcEEEEEeC---------------CCe
Q 021247          161 VLSVAWSPDGRRI-ACGSMDGTISVFDVTRAKFLHHLEGHFMPVRSLVYSPVDPRVLFSASD---------------DTH  224 (315)
Q Consensus       161 i~~~~~~~~~~~l-~~~s~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~---------------d~~  224 (315)
                      +.+++|+|+++.+ ++++.++.|++||+.+++....+. +...+.+++|+| +++++++++.               ||.
T Consensus       305 ~~~~~~~~~g~~l~~~~~~~~~v~v~d~~~~~~~~~~~-~~~~~~~~~~s~-dg~~l~~~~~~~~~~~~~~~~~g~~dg~  382 (433)
T 3bws_A          305 KRHIVSGNTENKIYVSDMCCSKIEVYDLKEKKVQKSIP-VFDKPNTIALSP-DGKYLYVSCRGPNHPTEGYLKKGLVLGK  382 (433)
T ss_dssp             EEEEEECSSTTEEEEEETTTTEEEEEETTTTEEEEEEE-CSSSEEEEEECT-TSSEEEEEECCCCCTTTCTTSCCSSCCE
T ss_pred             cceEEECCCCCEEEEEecCCCEEEEEECCCCcEEEEec-CCCCCCeEEEcC-CCCEEEEEecCCCccccccccccccceE
Confidence            7789999999755 667899999999999888877765 566789999999 4556666554               579


Q ss_pred             EEEEeCCCCeeEEEeecccccEEEEEEcCCCCeEEEEeC-CCcEEEEecCc
Q 021247          225 VHMYDAEGKSLVTAMSGHASWVLSVDASPDGAAITTGSS-DRTVKLWDLNM  274 (315)
Q Consensus       225 i~~wd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~-d~~i~iwd~~~  274 (315)
                      |++||..+++.+..+.. ...+.+++|+|++++|++++. |+.|++|+++.
T Consensus       383 v~~~d~~~~~~~~~~~~-~~~~~~~~~s~dg~~l~~~~~~d~~i~v~~~~~  432 (433)
T 3bws_A          383 VYVIDTTTDTVKEFWEA-GNQPTGLDVSPDNRYLVISDFLDHQIRVYRRDG  432 (433)
T ss_dssp             EEEEETTTTEEEEEEEC-SSSEEEEEECTTSCEEEEEETTTTEEEEEEETT
T ss_pred             EEEEECCCCcEEEEecC-CCCCceEEEcCCCCEEEEEECCCCeEEEEEecC
Confidence            99999999888877765 457899999999999988875 99999999863

>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*

Probab=99.97  E-value=1.2e-28  Score=219.20  Aligned_cols=278  Identities=12%  Similarity=0.103  Sum_probs=217.2

Q ss_pred             cEEEEeeCCCcEEEEcCCCCcceeecc-ccccceEEEEeCCCCCEEEEeeCCCeEEEEEC--CCCceeEEeeCCcccEEE
Q 021247           31 ALLLTGSLDETVKLWRPDDMQLERTNT-GHCLGVVSVAAHPSGIIAASASLDSFVRVFDV--DTNASIATLEASPSEVWQ  107 (315)
Q Consensus        31 ~~l~sgs~d~~v~~w~~~~~~~~~~~~-~h~~~v~~~~~~~~g~~l~s~~~d~~i~~w~~--~~~~~~~~~~~~~~~v~~  107 (315)
                      .++++++.|++|.+||..+.++...+. ++.  +..+.++|+|+++++++.|++|++||+  .+++.+.++.. ...+..
T Consensus       150 ~~~vs~~~d~~V~v~D~~t~~~~~~i~~g~~--~~~v~~spdg~~l~v~~~d~~V~v~D~~~~t~~~~~~i~~-g~~p~~  226 (543)
T 1nir_A          150 LFSVTLRDAGQIALVDGDSKKIVKVIDTGYA--VHISRMSASGRYLLVIGRDARIDMIDLWAKEPTKVAEIKI-GIEARS  226 (543)
T ss_dssp             EEEEEEGGGTEEEEEETTTCCEEEEEECSTT--EEEEEECTTSCEEEEEETTSEEEEEETTSSSCEEEEEEEC-CSEEEE
T ss_pred             EEEEEEcCCCeEEEEECCCceEEEEEecCcc--cceEEECCCCCEEEEECCCCeEEEEECcCCCCcEEEEEec-CCCcce
Confidence            378889999999999999998887776 443  889999999999999999999999999  78888888875 445789


Q ss_pred             EEECC----CCCeEEEEecCCCeEEEEecCCcceeeeecCCCCCCCCCCccCCCCcceEEEEECCCCCE-EEEecCCCcE
Q 021247          108 MQFDP----KGTTLAVAGGGSASVKLWDTATWNLIATLSIPRPEGLKPTDKSSSKKFVLSVAWSPDGRR-IACGSMDGTI  182 (315)
Q Consensus       108 ~~~~~----~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~-l~~~s~dg~i  182 (315)
                      ++|+|    +++.+++++..+++|.+||..+++.+..+....... . .........+..+.++|++.. +++...++.|
T Consensus       227 va~sp~~~~dg~~l~v~~~~~~~v~v~D~~t~~~~~~i~~~g~~~-~-~~~~~~~~~v~~i~~s~~~~~~~vs~~~~g~i  304 (543)
T 1nir_A          227 VESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTV-D-TQTYHPEPRVAAIIASHEHPEFIVNVKETGKV  304 (543)
T ss_dssp             EEECCSTTCTTTEEEEEEEESSEEEEEETTTCCEEEEEECCEECS-S-SCCEESCCCEEEEEECSSSSEEEEEETTTTEE
T ss_pred             EEeCCCcCCCCCEEEEEEccCCeEEEEeccccccceeecccCccc-C-ccccccCCceEEEEECCCCCEEEEEECCCCeE
Confidence            99999    999887777678999999999998888775432100 0 000011235889999997665 5677889999


Q ss_pred             EEEEcccceeee--eecCCccceEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCeeEEEeec----ccccEEEEEEcCC-C
Q 021247          183 SVFDVTRAKFLH--HLEGHFMPVRSLVYSPVDPRVLFSASDDTHVHMYDAEGKSLVTAMSG----HASWVLSVDASPD-G  255 (315)
Q Consensus       183 ~i~d~~~~~~~~--~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~----~~~~i~~~~~~~~-~  255 (315)
                      .+||+.+.+.+.  .+. +...+..+.|+|++..+++++..+++|.+||.++++++..+..    |.+....+ ++|+ +
T Consensus       305 ~vvd~~~~~~l~~~~i~-~~~~~~~~~~spdg~~l~va~~~~~~v~v~D~~tg~l~~~i~~g~~ph~g~g~~~-~~p~~g  382 (543)
T 1nir_A          305 LLVNYKDIDNLTVTSIG-AAPFLHDGGWDSSHRYFMTAANNSNKVAVIDSKDRRLSALVDVGKTPHPGRGANF-VHPKYG  382 (543)
T ss_dssp             EEEECTTSSSCEEEEEE-CCSSCCCEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSBCCTTCEEE-EETTTE
T ss_pred             EEEEecCCCcceeEEec-cCcCccCceECCCCCEEEEEecCCCeEEEEECCCCeEEEeeccCCCCCCCCCccc-CCCCCc
Confidence            999998755433  332 4456778999995544555666789999999999988887763    65444343 4676 6


Q ss_pred             CeEEEEe-CCCcEEEEecCc-------cceehcccccccceEEEEEeeCCCEEEEEe-------CCCcEEEeecC
Q 021247          256 AAITTGS-SDRTVKLWDLNM-------RAAMQSMTNHTDQVWGVSFRPLGGRVVSVS-------DDKSISLYEYS  315 (315)
Q Consensus       256 ~~l~s~~-~d~~i~iwd~~~-------~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~-------~d~~i~i~~~~  315 (315)
                      .+++++. .|++|++||+..       ++.++++..|...+..+++||+|++|++.+       .+++|.|||..
T Consensus       383 ~~~~s~~~~d~~V~v~d~~~~~~~~~~~~~v~~l~~~g~~~~~v~~~pdg~~l~v~~~~~~~~~~~~~v~v~d~~  457 (543)
T 1nir_A          383 PVWSTSHLGDGSISLIGTDPKNHPQYAWKKVAELQGQGGGSLFIKTHPKSSHLYVDTTFNPDARISQSVAVFDLK  457 (543)
T ss_dssp             EEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECSCSCCCCEECCTTCCEEEECCTTCSSHHHHTCEEEEETT
T ss_pred             cEEEeccCCCceEEEEEeCCCCCchhcCeEEEEEEcCCCCceEEEcCCCCCcEEEecCCCCCcccCceEEEEECC
Confidence            6777776 689999999988       788899999988888999999999999887       37899999963

>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A

Probab=99.97  E-value=1e-30  Score=224.44  Aligned_cols=230  Identities=14%  Similarity=0.101  Sum_probs=154.8

Q ss_pred             hhhhccccceEEEEEeecCCC----CCcEEEEeeCCCcEEEEcCCCCcceeeccccccceEEEEeCCCC-CEEEEeeCCC
Q 021247            8 SVENAHEESVWAVTWVPATET----RPALLLTGSLDETVKLWRPDDMQLERTNTGHCLGVVSVAAHPSG-IIAASASLDS   82 (315)
Q Consensus         8 ~~~~~h~~~v~~v~~~~~~~~----~~~~l~sgs~d~~v~~w~~~~~~~~~~~~~h~~~v~~~~~~~~g-~~l~s~~~d~   82 (315)
                      ..+.+|++.|++|+|+|....    ...+|+|||.|++|++||..+........+|..++.+++|+|++ .+|++++.|+
T Consensus       130 ~~~~gH~~~v~~v~~~p~~~~~~~~d~~~las~s~D~tv~~Wd~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~d~  209 (393)
T 4gq1_A          130 GGKSGHHNFVNDIDIADVYSADNRLAEQVIASVGDDCTLIIWRLTDEGPILAGYPLSSPGISVQFRPSNPNQLIVGERNG  209 (393)
T ss_dssp             CTTTSCSSCEEEEEEEEEECTTCSEEEEEEEEEETTSEEEEEEEETTEEEEEEEECSSCEEEEEEETTEEEEEEEEETTS
T ss_pred             cccCCCCCceEEEEEccccccccCCCCCEEEEEECCCeEEEEECCCCceeeeecCCCCCcEEEEECCCCCceEEecCCCC
Confidence            346899999999999984211    12489999999999999988777667777889999999999987 5899999999


Q ss_pred             eEEEEECCCCceeEEeeCCccc----EEEEEECCCCCeEEEEecCCCeEEEEecCCcceeeeecCCCCCCCCCCccCCCC
Q 021247           83 FVRVFDVDTNASIATLEASPSE----VWQMQFDPKGTTLAVAGGGSASVKLWDTATWNLIATLSIPRPEGLKPTDKSSSK  158 (315)
Q Consensus        83 ~i~~w~~~~~~~~~~~~~~~~~----v~~~~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~  158 (315)
                      +|++||+.+++.......+...    +......+...                                   ......+.
T Consensus       210 ~v~~wd~~t~~~~~~~~~~~~~~~~~~~s~~~~~~~~-----------------------------------~~~~~~~~  254 (393)
T 4gq1_A          210 NIRIFDWTLNLSAEENSQTELVKNPWLLTLNTLPLVN-----------------------------------TCHSSGIA  254 (393)
T ss_dssp             EEEEEETTCCC----------CSCCCSEEEESGGGC-----------------------------------------CCS
T ss_pred             EEEEEECCCCcccccccccCCcccceEEeccccccee-----------------------------------eeeccccc
Confidence            9999999988765444322211    11111110000                                   00011234


Q ss_pred             cceEEEEEC-CCCCEEEEecCCCcEEEEEcccceeeeeecCCccceEEE------------------EEcCC-CCcEEEE
Q 021247          159 KFVLSVAWS-PDGRRIACGSMDGTISVFDVTRAKFLHHLEGHFMPVRSL------------------VYSPV-DPRVLFS  218 (315)
Q Consensus       159 ~~i~~~~~~-~~~~~l~~~s~dg~i~i~d~~~~~~~~~~~~~~~~v~~~------------------~~~~~-~~~~l~s  218 (315)
                      ..+.++.|+ ++++.|++++.|+.+++||+..++....+..|...+..+                  .|+|. +..++++
T Consensus       255 ~~v~~v~~~~~dg~~l~s~s~d~~i~vwd~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s  334 (393)
T 4gq1_A          255 SSLANVRWIGSDGSGILAMCKSGAWLRWNLFANNDYNEISDSTMKLGPKNLLPNVQGISLFPSLLGACPHPRYMDYFATA  334 (393)
T ss_dssp             SSCSEEEEETTTTCEEEEECTTSEEEEEEC-------------------CCSCSEEEECSSCCSSCCEECSSCTTEEEEE
T ss_pred             ccceeeeeecCCCCEEEEEeCCCCEEEEECccCCCCceEeeecCccccEEEccccccccccCcceeEEEccCCCCEEEEE
Confidence            457788886 799999999999999999998776655554444333322                  23333 4446778


Q ss_pred             EeCCCeEEEEeCCCCeeEEEeecccccEEEEEEcCCCCeEEEEeCCCcEEEEecC
Q 021247          219 ASDDTHVHMYDAEGKSLVTAMSGHASWVLSVDASPDGAAITTGSSDRTVKLWDLN  273 (315)
Q Consensus       219 ~~~d~~i~~wd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~d~~i~iwd~~  273 (315)
                      |+.|+.|++||...+.......+|..+|.+++|+|+|++||+++.+| +.+|.+.
T Consensus       335 gs~Dg~V~lwd~~~~~~~~~~~~~~~~V~svafspdG~~LA~as~~G-v~lvrL~  388 (393)
T 4gq1_A          335 HSQHGLIQLINTYEKDSNSIPIQLGMPIVDFCWHQDGSHLAIATEGS-VLLTRLM  388 (393)
T ss_dssp             ETTTTEEEEEETTCTTCCEEEEECSSCEEEEEECTTSSEEEEEESSE-EEEEEEG
T ss_pred             ECCCCEEEEEECCCCcEEEEecCCCCcEEEEEEcCCCCEEEEEeCCC-eEEEEEe
Confidence            88999999999998888888888999999999999999999998776 6666653

>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}

Probab=99.97  E-value=5.1e-28  Score=202.63  Aligned_cols=268  Identities=10%  Similarity=0.113  Sum_probs=197.8

Q ss_pred             cEEEEeeCCCcEEEEcCCCCcceeeccccccceEEEEeCCCCCEEEEeeC-CCeEEEEECCCCce-eEEeeCCcccEEEE
Q 021247           31 ALLLTGSLDETVKLWRPDDMQLERTNTGHCLGVVSVAAHPSGIIAASASL-DSFVRVFDVDTNAS-IATLEASPSEVWQM  108 (315)
Q Consensus        31 ~~l~sgs~d~~v~~w~~~~~~~~~~~~~h~~~v~~~~~~~~g~~l~s~~~-d~~i~~w~~~~~~~-~~~~~~~~~~v~~~  108 (315)
                      .++++++.++.|++||.++.+.......+...+ .+.++|+|+++++++. ++.|++||+.+++. ...+..+..+..++
T Consensus        11 ~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~-~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~   89 (331)
T 3u4y_A           11 FGIVVEQHLRRISFFSTDTLEILNQITLGYDFV-DTAITSDCSNVVVTSDFCQTLVQIETQLEPPKVVAIQEGQSSMADV   89 (331)
T ss_dssp             EEEEEEGGGTEEEEEETTTCCEEEEEECCCCEE-EEEECSSSCEEEEEESTTCEEEEEECSSSSCEEEEEEECSSCCCCE
T ss_pred             EEEEEecCCCeEEEEeCcccceeeeEEccCCcc-eEEEcCCCCEEEEEeCCCCeEEEEECCCCceeEEecccCCCCccce
Confidence            468888999999999999888877766555666 9999999986665554 89999999999887 66666666666559


Q ss_pred             EECCCCCeEEEEecCC-C--eEEEEecCCcceeeeecCCCCCCCCCCccCCCCcceEEEEECCCCCEEEE-ecCCCc-EE
Q 021247          109 QFDPKGTTLAVAGGGS-A--SVKLWDTATWNLIATLSIPRPEGLKPTDKSSSKKFVLSVAWSPDGRRIAC-GSMDGT-IS  183 (315)
Q Consensus       109 ~~~~~~~~~~~~~~~d-~--~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~-~s~dg~-i~  183 (315)
                      +|+|+++.++ ++..+ +  .|.+||+.+++.+..+...              .....++|+|+|+++++ +..++. +.
T Consensus        90 ~~s~dg~~l~-~~~~~~~~~~i~v~d~~~~~~~~~~~~~--------------~~~~~~~~spdg~~l~~~~~~~~~~i~  154 (331)
T 3u4y_A           90 DITPDDQFAV-TVTGLNHPFNMQSYSFLKNKFISTIPIP--------------YDAVGIAISPNGNGLILIDRSSANTVR  154 (331)
T ss_dssp             EECTTSSEEE-ECCCSSSSCEEEEEETTTTEEEEEEECC--------------TTEEEEEECTTSSCEEEEEETTTTEEE
T ss_pred             EECCCCCEEE-EecCCCCcccEEEEECCCCCeEEEEECC--------------CCccceEECCCCCEEEEEecCCCceEE
Confidence            9999999877 44444 3  9999999988877665321              12579999999986654 456678 99


Q ss_pred             EEEcccceee----eeecCCccceEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCee---EEEeecccccEEEEEEcCCCC
Q 021247          184 VFDVTRAKFL----HHLEGHFMPVRSLVYSPVDPRVLFSASDDTHVHMYDAEGKSL---VTAMSGHASWVLSVDASPDGA  256 (315)
Q Consensus       184 i~d~~~~~~~----~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~---~~~~~~~~~~i~~~~~~~~~~  256 (315)
                      +|++.....+    .........+..+.|+|++..+++++..++.|.+||+++++.   +..+.. ...+..++|+|+|+
T Consensus       155 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~~~~~~~~~~~~-~~~~~~~~~spdg~  233 (331)
T 3u4y_A          155 RFKIDADGVLFDTGQEFISGGTRPFNITFTPDGNFAFVANLIGNSIGILETQNPENITLLNAVGT-NNLPGTIVVSRDGS  233 (331)
T ss_dssp             EEEECTTCCEEEEEEEEECSSSSEEEEEECTTSSEEEEEETTTTEEEEEECSSTTSCEEEEEEEC-SSCCCCEEECTTSS
T ss_pred             EEEECCCCcEeecCCccccCCCCccceEECCCCCEEEEEeCCCCeEEEEECCCCcccceeeeccC-CCCCceEEECCCCC
Confidence            9998643222    111223345789999995544666777899999999988877   666654 35677899999999


Q ss_pred             eEEEE-eCCCcEEEEecCccce--ehccccc----cc---ceEEEEEeeCCCEEEEEe-CCCcEEEeecC
Q 021247          257 AITTG-SSDRTVKLWDLNMRAA--MQSMTNH----TD---QVWGVSFRPLGGRVVSVS-DDKSISLYEYS  315 (315)
Q Consensus       257 ~l~s~-~~d~~i~iwd~~~~~~--~~~~~~~----~~---~v~~~~~s~~~~~l~s~~-~d~~i~i~~~~  315 (315)
                      +++.+ ..++.|.+||+.+++.  +..+..+    ..   ....++|+|+|++|+.++ .+++|.+||+.
T Consensus       234 ~l~v~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~  303 (331)
T 3u4y_A          234 TVYVLTESTVDVFNFNQLSGTLSFVKSFGHGLLIDPRPLFGANQMALNKTETKLFISANISRELKVFTIS  303 (331)
T ss_dssp             EEEEECSSEEEEEEEETTTTEEEEEEEEECCCCCCCGGGTTCCCEEECTTSSEEEEEETTTTEEEEEETT
T ss_pred             EEEEEEcCCCEEEEEECCCCceeeecccccccccCCCCcccccceEECCCCCEEEEecCCCCcEEEEEec
Confidence            76554 4578899999988765  3222211    22   234589999999886554 56799999974

>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1

Probab=99.97  E-value=8.8e-28  Score=201.76  Aligned_cols=267  Identities=13%  Similarity=0.210  Sum_probs=189.8

Q ss_pred             EEEEeeCCCcEEEEcCCC-Ccce-eeccccccceEEEEeCCCCCEEEEeeCC-CeEEEEECC--CCc--eeEEeeCCccc
Q 021247           32 LLLTGSLDETVKLWRPDD-MQLE-RTNTGHCLGVVSVAAHPSGIIAASASLD-SFVRVFDVD--TNA--SIATLEASPSE  104 (315)
Q Consensus        32 ~l~sgs~d~~v~~w~~~~-~~~~-~~~~~h~~~v~~~~~~~~g~~l~s~~~d-~~i~~w~~~--~~~--~~~~~~~~~~~  104 (315)
                      ++++++.|+.|++|+.+. .+.. .....|...+..++++|+|.++++++.+ +.|++|++.  ++.  .+..+.... .
T Consensus         7 l~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~-~   85 (343)
T 1ri6_A            7 VYIASPESQQIHVWNLNHEGALTLTQVVDVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESALPG-S   85 (343)
T ss_dssp             EEEEEGGGTEEEEEEECTTSCEEEEEEEECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEECSS-C
T ss_pred             EEEeCCCCCeEEEEEECCCCcEEEeeeEecCCCCceEEECCCCCEEEEeecCCCeEEEEEecCCCCceeeccccccCC-C
Confidence            455557899999998853 2221 1223466678899999999988888876 999999998  444  233444333 6


Q ss_pred             EEEEEECCCCCeEEEEecCCCeEEEEecC---CcceeeeecCCCCCCCCCCccCCCCcceEEEEECCCCCEEEEec-CCC
Q 021247          105 VWQMQFDPKGTTLAVAGGGSASVKLWDTA---TWNLIATLSIPRPEGLKPTDKSSSKKFVLSVAWSPDGRRIACGS-MDG  180 (315)
Q Consensus       105 v~~~~~~~~~~~~~~~~~~d~~i~~~d~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~s-~dg  180 (315)
                      +..++|+|+++.+++++..++.|.+||+.   ..+....+..              ...+.+++|+|+++++++++ .++
T Consensus        86 ~~~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~--------------~~~~~~~~~s~dg~~l~~~~~~~~  151 (343)
T 1ri6_A           86 LTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVEG--------------LDGCHSANISPDNRTLWVPALKQD  151 (343)
T ss_dssp             CSEEEECTTSSEEEEEETTTTEEEEEEEETTEEEEEEEEECC--------------CTTBCCCEECTTSSEEEEEEGGGT
T ss_pred             CcEEEEcCCCCEEEEEecCCCeEEEEECCCCccccccccccC--------------CCCceEEEECCCCCEEEEecCCCC
Confidence            78899999999888887778999999994   3333333211              11267899999999887766 889


Q ss_pred             cEEEEEccc-ceeee----eecC-CccceEEEEEcCCCCcEEEEEeCCCeEEEEeCCC--Cee--EEEee----cc--cc
Q 021247          181 TISVFDVTR-AKFLH----HLEG-HFMPVRSLVYSPVDPRVLFSASDDTHVHMYDAEG--KSL--VTAMS----GH--AS  244 (315)
Q Consensus       181 ~i~i~d~~~-~~~~~----~~~~-~~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~--~~~--~~~~~----~~--~~  244 (315)
                      .|.+||+.+ ++...    .... ....+..+.|+|++..+++++..++.|.+|++..  ++.  .....    ++  ..
T Consensus       152 ~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pdg~~l~~~~~~~~~i~~~~~~~~~g~~~~~~~~~~~~~~~~~~~  231 (343)
T 1ri6_A          152 RICLFTVSDDGHLVAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPENFSDTR  231 (343)
T ss_dssp             EEEEEEECTTSCEEEEEEEEEECSTTCCEEEEEECTTSSEEEEEETTTTEEEEEESSCTTSCCEEEEEEECSCTTCCSCC
T ss_pred             EEEEEEecCCCceeeecccccccCCCCCcceEEECCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEeeccccCccccccC
Confidence            999999987 54432    2222 2346788999995544556666899999999853  332  22222    11  23


Q ss_pred             cEEEEEEcCCCCeEE-EEeCCCcEEEEecC----ccceehcccccccceEEEEEeeCCCEEEEEe-CCCcEEEeec
Q 021247          245 WVLSVDASPDGAAIT-TGSSDRTVKLWDLN----MRAAMQSMTNHTDQVWGVSFRPLGGRVVSVS-DDKSISLYEY  314 (315)
Q Consensus       245 ~i~~~~~~~~~~~l~-s~~~d~~i~iwd~~----~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~-~d~~i~i~~~  314 (315)
                      .+..++|+|++++|+ ++..++.|++|++.    ..+.+..+..+.. +.+++|+|+|++|++++ .++.|.+|++
T Consensus       232 ~~~~i~~s~dg~~l~v~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~-~~~~~~s~dg~~l~~~~~~~~~v~v~~~  306 (343)
T 1ri6_A          232 WAADIHITPDGRHLYACDRTASLITVFSVSEDGSVLSKEGFQPTETQ-PRGFNVDHSGKYLIAAGQKSHHISVYEI  306 (343)
T ss_dssp             CEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCCEEEEEEEECSSS-CCCEEECTTSSEEEEECTTTCEEEEEEE
T ss_pred             CccceEECCCCCEEEEEecCCCEEEEEEEcCCCCceEEeeeecCCCc-cceEEECCCCCEEEEecCCCCeEEEEEE
Confidence            577899999998776 55579999999998    2334444444443 88999999999888777 6899999964

>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A

Probab=99.97  E-value=3.1e-27  Score=204.01  Aligned_cols=246  Identities=15%  Similarity=0.137  Sum_probs=192.0

Q ss_pred             EEEEeeCC------CcEEEEcCCCCcceeeccccccceEEEEeCCCCCEEEEeeCCC---eEEEEECCCCceeEEeeCCc
Q 021247           32 LLLTGSLD------ETVKLWRPDDMQLERTNTGHCLGVVSVAAHPSGIIAASASLDS---FVRVFDVDTNASIATLEASP  102 (315)
Q Consensus        32 ~l~sgs~d------~~v~~w~~~~~~~~~~~~~h~~~v~~~~~~~~g~~l~s~~~d~---~i~~w~~~~~~~~~~~~~~~  102 (315)
                      .++.++.+      +.|++||.+. ...+.+.+|...+.+++|+|+|++|++++.|+   .|++||+.+++.. .+..+.
T Consensus       145 ~l~~~s~~~~~~~~~~i~i~d~~g-~~~~~l~~~~~~v~~~~~Spdg~~la~~s~~~~~~~i~~~d~~tg~~~-~l~~~~  222 (415)
T 2hqs_A          145 RIAYVVQTNGGQFPYELRVSDYDG-YNQFVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVR-QVASFP  222 (415)
T ss_dssp             EEEEEEECSSSSCCEEEEEEETTS-CSCEEEEEESSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEE-EEECCS
T ss_pred             EEEEEEecCCCCccceEEEEcCCC-CCCEEEeCCCCcceeeEEcCCCCEEEEEEecCCCcEEEEEECCCCcEE-EeecCC
Confidence            45555543      7999999874 34566677889999999999999999999885   9999999988765 455677


Q ss_pred             ccEEEEEECCCCCeEEEEecCCC--eEEEEecCCcceeeeecCCCCCCCCCCccCCCCcceEEEEECCCCCEEEEecC-C
Q 021247          103 SEVWQMQFDPKGTTLAVAGGGSA--SVKLWDTATWNLIATLSIPRPEGLKPTDKSSSKKFVLSVAWSPDGRRIACGSM-D  179 (315)
Q Consensus       103 ~~v~~~~~~~~~~~~~~~~~~d~--~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~s~-d  179 (315)
                      ..+..++|+|+++.++++++.++  .|++||+++++.. .+.             .+...+.+++|+|+|++|+.++. +
T Consensus       223 ~~~~~~~~spdg~~la~~~~~~g~~~i~~~d~~~~~~~-~l~-------------~~~~~~~~~~~spdg~~l~~~s~~~  288 (415)
T 2hqs_A          223 RHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQIR-QVT-------------DGRSNNTEPTWFPDSQNLAFTSDQA  288 (415)
T ss_dssp             SCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEE-ECC-------------CCSSCEEEEEECTTSSEEEEEECTT
T ss_pred             CcccCEEEcCCCCEEEEEEecCCCceEEEEECCCCCEE-eCc-------------CCCCcccceEECCCCCEEEEEECCC
Confidence            78999999999998887776654  5999999876542 221             12345889999999999988775 4


Q ss_pred             C--cEEEEEcccceeeeeecCCccceEEEEEcCCCCcEEEEEeCC---CeEEEEeCCCCeeEEEeecccccEEEEEEcCC
Q 021247          180 G--TISVFDVTRAKFLHHLEGHFMPVRSLVYSPVDPRVLFSASDD---THVHMYDAEGKSLVTAMSGHASWVLSVDASPD  254 (315)
Q Consensus       180 g--~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d---~~i~~wd~~~~~~~~~~~~~~~~i~~~~~~~~  254 (315)
                      +  .|++||+.+++. ..+..+...+..+.|+| ++++|+.++.+   ..|++||..+++.. .+..+. .+.+++|+|+
T Consensus       289 g~~~i~~~d~~~~~~-~~l~~~~~~~~~~~~sp-dG~~l~~~~~~~g~~~i~~~d~~~~~~~-~l~~~~-~~~~~~~spd  364 (415)
T 2hqs_A          289 GRPQVYKVNINGGAP-QRITWEGSQNQDADVSS-DGKFMVMVSSNGGQQHIAKQDLATGGVQ-VLSSTF-LDETPSLAPN  364 (415)
T ss_dssp             SSCEEEEEETTSSCC-EECCCSSSEEEEEEECT-TSSEEEEEEECSSCEEEEEEETTTCCEE-ECCCSS-SCEEEEECTT
T ss_pred             CCcEEEEEECCCCCE-EEEecCCCcccCeEECC-CCCEEEEEECcCCceEEEEEECCCCCEE-EecCCC-CcCCeEEcCC
Confidence            4  688889887763 34555667888999999 55666665543   58999999987664 455554 7899999999


Q ss_pred             CCeEEEEeCCC---cEEEEecCccceehcccccccceEEEEEeeCCC
Q 021247          255 GAAITTGSSDR---TVKLWDLNMRAAMQSMTNHTDQVWGVSFRPLGG  298 (315)
Q Consensus       255 ~~~l~s~~~d~---~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~  298 (315)
                      |++|++++.++   .|++||+. +.....+..|.+.|++++|+|--+
T Consensus       365 g~~l~~~s~~~~~~~l~~~d~~-g~~~~~l~~~~~~v~~~~~~~~~~  410 (415)
T 2hqs_A          365 GTMVIYSSSQGMGSVLNLVSTD-GRFKARLPATDGQVKFPAWSPYLH  410 (415)
T ss_dssp             SSEEEEEEEETTEEEEEEEETT-SCCEEECCCSSSEEEEEEECCCCC
T ss_pred             CCEEEEEEcCCCccEEEEEECC-CCcEEEeeCCCCCCcCCccccccc
Confidence            99999888877   79999997 455667888999999999999754

>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}

Probab=99.96  E-value=1.2e-27  Score=221.37  Aligned_cols=286  Identities=11%  Similarity=0.055  Sum_probs=211.3

Q ss_pred             ccceEEEEEeecCCCCCcEEEEeeC-CC-----cEEEEcCCCCcceeeccccc------------------------cce
Q 021247           14 EESVWAVTWVPATETRPALLLTGSL-DE-----TVKLWRPDDMQLERTNTGHC------------------------LGV   63 (315)
Q Consensus        14 ~~~v~~v~~~~~~~~~~~~l~sgs~-d~-----~v~~w~~~~~~~~~~~~~h~------------------------~~v   63 (315)
                      ...|..++|+|++.    .|++++. |+     .|++|+.++.+.......+.                        ..+
T Consensus        36 ~~~~~~~~~SpdG~----~la~~~~~d~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v  111 (741)
T 2ecf_A           36 GPTLMKPKVAPDGS----RVTFLRGKDSDRNQLDLWSYDIGSGQTRLLVDSKVVLPGTETLSDEEKARRERQRIAAMTGI  111 (741)
T ss_dssp             CCCCEEEEECTTSS----EEEEEECCSSCTTEEEEEEEETTTCCEEEEECGGGTC--------------------CCEES
T ss_pred             CCCCCCceEecCCC----EEEEEeccCCCCcccEEEEEECCCCceeEccchhhcccccccccchhhhhhhhhhhccccCc
Confidence            45799999999886    6888888 88     89999998887665554443                        237


Q ss_pred             EEEEeCCCCCEEEEeeCCCeEEEEECCCCc--eeEEeeCCcccEEEEEECCCCCeEEEEecCCCeEEEEecCCcceeeee
Q 021247           64 VSVAAHPSGIIAASASLDSFVRVFDVDTNA--SIATLEASPSEVWQMQFDPKGTTLAVAGGGSASVKLWDTATWNLIATL  141 (315)
Q Consensus        64 ~~~~~~~~g~~l~s~~~d~~i~~w~~~~~~--~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~  141 (315)
                      .+++|+|+|++|++++. +.|++||+.++.  ....+..+...+..++|+|+|+.++++.  ++.|.+||+.+++.....
T Consensus       112 ~~~~~SpDg~~l~~~~~-~~i~~~d~~~~~~~~~~~l~~~~~~~~~~~~SPDG~~la~~~--~~~i~~~d~~~g~~~~~~  188 (741)
T 2ecf_A          112 VDYQWSPDAQRLLFPLG-GELYLYDLKQEGKAAVRQLTHGEGFATDAKLSPKGGFVSFIR--GRNLWVIDLASGRQMQLT  188 (741)
T ss_dssp             CCCEECTTSSEEEEEET-TEEEEEESSSCSTTSCCBCCCSSSCEEEEEECTTSSEEEEEE--TTEEEEEETTTTEEEECC
T ss_pred             ceeEECCCCCEEEEEeC-CcEEEEECCCCCcceEEEcccCCcccccccCCCCCCEEEEEe--CCcEEEEecCCCCEEEec
Confidence            89999999999998886 899999999873  3444556677899999999999876654  469999999886654332


Q ss_pred             cCCCCCCCCCCccCCC--------CcceEEEEECCCCCEEEEecCCC---------------------------------
Q 021247          142 SIPRPEGLKPTDKSSS--------KKFVLSVAWSPDGRRIACGSMDG---------------------------------  180 (315)
Q Consensus       142 ~~~~~~~~~~~~~~~~--------~~~i~~~~~~~~~~~l~~~s~dg---------------------------------  180 (315)
                      ......     .....        ...+..++|+|||++|+.++.|+                                 
T Consensus       189 ~~~~~~-----~~~g~~~~v~~~~~~~~~~~~~SpDg~~l~~~~~d~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~~  263 (741)
T 2ecf_A          189 ADGSTT-----IGNGIAEFVADEEMDRHTGYWWAPDDSAIAYARIDESPVPVQKRYEVYADRTDVIEQRYPAAGDANVQV  263 (741)
T ss_dssp             CCCCSS-----EEESCCCHHHHHHSCCCCSEEECTTSSCEEEEEEECTTSCEEEEEEECSSCEEEEEEECCBTTSCCCEE
T ss_pred             cCCccc-----eeccccceeeeeccccccceEECCCCCEEEEEEEcCCCCceEecCCCCCCcccceEeecCCCCCCCCee
Confidence            211000     00000        01146799999999999887665                                 


Q ss_pred             cEEEEEccc-ceeeeeec--CCccceEEEEEcCCCCcEEEEEe-----CCCeEEEEeCCCCeeEEEeecccc----cEEE
Q 021247          181 TISVFDVTR-AKFLHHLE--GHFMPVRSLVYSPVDPRVLFSAS-----DDTHVHMYDAEGKSLVTAMSGHAS----WVLS  248 (315)
Q Consensus       181 ~i~i~d~~~-~~~~~~~~--~~~~~v~~~~~~~~~~~~l~s~~-----~d~~i~~wd~~~~~~~~~~~~~~~----~i~~  248 (315)
                      .|++||+.+ ++......  .|...+..+.| |+ ++.|+.++     .+..|++||..+++....+..+..    .+..
T Consensus       264 ~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~-pD-g~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~  341 (741)
T 2ecf_A          264 KLGVISPAEQAQTQWIDLGKEQDIYLARVNW-RD-PQHLSFQRQSRDQKKLDLVEVTLASNQQRVLAHETSPTWVPLHNS  341 (741)
T ss_dssp             EEEEECSSTTCCCEEECCCSCSSEEEEEEEE-EE-TTEEEEEEEETTSSEEEEEEEETTTCCEEEEEEEECSSCCCCCSC
T ss_pred             EEEEEECCCCCceEEecCCCCcceEEEEEEe-CC-CCEEEEEEecccCCeEEEEEEECCCCceEEEEEcCCCCcCCcCCc
Confidence            789999988 76544332  46778999999 84 55555443     357899999998877666655442    3457


Q ss_pred             EEEcCCCCeEEEEeCCCcEEEEecC-ccceehcccccccceEEE-EEeeCCCEEEE-EeCCC--cEEEeec
Q 021247          249 VDASPDGAAITTGSSDRTVKLWDLN-MRAAMQSMTNHTDQVWGV-SFRPLGGRVVS-VSDDK--SISLYEY  314 (315)
Q Consensus       249 ~~~~~~~~~l~s~~~d~~i~iwd~~-~~~~~~~~~~~~~~v~~~-~~s~~~~~l~s-~~~d~--~i~i~~~  314 (315)
                      ++|+|+|+++++++.|+.++||.++ .+. ...+..|...+.++ .|+|+|+.|+. ++.++  +++||++
T Consensus       342 ~~~spdg~~~~~~~~~g~~~l~~~~~~~~-~~~l~~~~~~v~~~~~~s~dg~~l~~~~~~~~~~~~~l~~~  411 (741)
T 2ecf_A          342 LRFLDDGSILWSSERTGFQHLYRIDSKGK-AAALTHGNWSVDELLAVDEKAGLAYFRAGIESARESQIYAV  411 (741)
T ss_dssp             CEECTTSCEEEEECTTSSCEEEEECSSSC-EEESCCSSSCEEEEEEEETTTTEEEEEECSSCTTCBEEEEE
T ss_pred             eEECCCCeEEEEecCCCccEEEEEcCCCC-eeeeeecceEEEeEeEEeCCCCEEEEEEeCCCCceEEEEEE
Confidence            8999999999999999988888765 334 66677777788887 59999998864 45555  8999975

>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*

Probab=99.96  E-value=2.5e-26  Score=193.80  Aligned_cols=274  Identities=13%  Similarity=0.160  Sum_probs=210.7

Q ss_pred             ccccceEEEEEeecCCCCCcEEEEeeC-------CCcEEEEcCCCCcceeeccccccceEEEEeCCCCCE-EEEeeCCCe
Q 021247           12 AHEESVWAVTWVPATETRPALLLTGSL-------DETVKLWRPDDMQLERTNTGHCLGVVSVAAHPSGII-AASASLDSF   83 (315)
Q Consensus        12 ~h~~~v~~v~~~~~~~~~~~~l~sgs~-------d~~v~~w~~~~~~~~~~~~~h~~~v~~~~~~~~g~~-l~s~~~d~~   83 (315)
                      .....+..++|+|+++    .+++++.       ++.|.+||..+.+....+.. ...+..+.++|+|++ +++...++.
T Consensus        38 ~~~~~~~~~~~s~dg~----~l~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~-~~~~~~~~~s~dg~~l~v~~~~~~~  112 (353)
T 3vgz_A           38 AVGKGAYEMAYSQQEN----ALWLATSQSRKLDKGGVVYRLDPVTLEVTQAIHN-DLKPFGATINNTTQTLWFGNTVNSA  112 (353)
T ss_dssp             EEESSEEEEEEETTTT----EEEEEECCCTTTEESEEEEEECTTTCCEEEEEEE-SSCCCSEEEETTTTEEEEEETTTTE
T ss_pred             hhccCccceEECCCCC----EEEEEcCCCcCCCCCccEEEEcCCCCeEEEEEec-CCCcceEEECCCCCEEEEEecCCCE
Confidence            3455788999999765    4566553       56899999988887666543 234678899999984 455666899


Q ss_pred             EEEEECCCCceeEEeeCCcc---------cEEEEEECCCCCeEEEEe-cCCCeEEEEecCCcceeeeecCCCCCCCCCCc
Q 021247           84 VRVFDVDTNASIATLEASPS---------EVWQMQFDPKGTTLAVAG-GGSASVKLWDTATWNLIATLSIPRPEGLKPTD  153 (315)
Q Consensus        84 i~~w~~~~~~~~~~~~~~~~---------~v~~~~~~~~~~~~~~~~-~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~  153 (315)
                      |.+||..+++.+..+..+..         .+..+.|+|+++.+++++ +.++.|.+||..+++.+..+....        
T Consensus       113 v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~i~~~d~~~~~~~~~~~~~~--------  184 (353)
T 3vgz_A          113 VTAIDAKTGEVKGRLVLDDRKRTEEVRPLQPRELVADDATNTVYISGIGKESVIWVVDGGNIKLKTAIQNTG--------  184 (353)
T ss_dssp             EEEEETTTCCEEEEEESCCCCCCSSCCCCEEEEEEEETTTTEEEEEEESSSCEEEEEETTTTEEEEEECCCC--------
T ss_pred             EEEEeCCCCeeEEEEecCCCccccccCCCCCceEEECCCCCEEEEEecCCCceEEEEcCCCCceEEEecCCC--------
Confidence            99999999988777765432         268899999999887776 458899999999888776664211        


Q ss_pred             cCCCCcceEEEEECCCCCEEEEecCCCcEEEEEcccceeeeeecC----CccceEEEEEcCCCCcEEEEEeCCCeEEEEe
Q 021247          154 KSSSKKFVLSVAWSPDGRRIACGSMDGTISVFDVTRAKFLHHLEG----HFMPVRSLVYSPVDPRVLFSASDDTHVHMYD  229 (315)
Q Consensus       154 ~~~~~~~i~~~~~~~~~~~l~~~s~dg~i~i~d~~~~~~~~~~~~----~~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd  229 (315)
                           ..+..++|+|++++++++..++.+.+||+.+++....+..    +...+..++|+|++..++++...++.|.+||
T Consensus       185 -----~~~~~~~~s~dg~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d  259 (353)
T 3vgz_A          185 -----KMSTGLALDSEGKRLYTTNADGELITIDTADNKILSRKKLLDDGKEHFFINISLDTARQRAFITDSKAAEVLVVD  259 (353)
T ss_dssp             -----TTCCCCEEETTTTEEEEECTTSEEEEEETTTTEEEEEEECCCSSSCCCEEEEEEETTTTEEEEEESSSSEEEEEE
T ss_pred             -----CccceEEECCCCCEEEEEcCCCeEEEEECCCCeEEEEEEcCCCCCCcccceEEECCCCCEEEEEeCCCCEEEEEE
Confidence                 1255789999999999999999999999999888766653    4556788999996555666666679999999


Q ss_pred             CCCCeeEEEeecccccEEEEEEcCCCCeEEEEe-CCCcEEEEecCccceehcccccccceEEEEEeeCCCEEEEEeCC
Q 021247          230 AEGKSLVTAMSGHASWVLSVDASPDGAAITTGS-SDRTVKLWDLNMRAAMQSMTNHTDQVWGVSFRPLGGRVVSVSDD  306 (315)
Q Consensus       230 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~-~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d  306 (315)
                      .++++.+..+....  ...++|+|+++.++.++ .++.|.+||+.+++.+..+... ..+.+++|+|+|++|+.+..+
T Consensus       260 ~~~~~~~~~~~~~~--~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~-~~~~~~~~s~dg~~l~v~~~~  334 (353)
T 3vgz_A          260 TRNGNILAKVAAPE--SLAVLFNPARNEAYVTHRQAGKVSVIDAKSYKVVKTFDTP-THPNSLALSADGKTLYVSVKQ  334 (353)
T ss_dssp             TTTCCEEEEEECSS--CCCEEEETTTTEEEEEETTTTEEEEEETTTTEEEEEEECC-SEEEEEEECTTSCEEEEEEEC
T ss_pred             CCCCcEEEEEEcCC--CceEEECCCCCEEEEEECCCCeEEEEECCCCeEEEEEecC-CCCCeEEEcCCCCEEEEEEcc
Confidence            99888777666433  25689999998655444 7899999999988887776543 477899999999977655544

>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}

Probab=99.96  E-value=2.9e-27  Score=194.15  Aligned_cols=257  Identities=14%  Similarity=0.148  Sum_probs=189.7

Q ss_pred             EEeeCCCcEEEEcCCCCcceeeccccccceEEEEeCCCCCEEEEeeCCCeEEEEECCC-CceeEEeeCC-cccEEEEEEC
Q 021247           34 LTGSLDETVKLWRPDDMQLERTNTGHCLGVVSVAAHPSGIIAASASLDSFVRVFDVDT-NASIATLEAS-PSEVWQMQFD  111 (315)
Q Consensus        34 ~sgs~d~~v~~w~~~~~~~~~~~~~h~~~v~~~~~~~~g~~l~s~~~d~~i~~w~~~~-~~~~~~~~~~-~~~v~~~~~~  111 (315)
                      .+++.|+.|++|+..+.+.. .+..|...+.++.|+|+|.++++++ ++.|++||+.+ ++.......+ ...+..++|+
T Consensus        16 ~~~~~~~~i~~~d~~~~~~~-~~~~~~~~v~~~~~spdg~~l~~~~-~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~s   93 (297)
T 2ojh_A           16 PGGSMRSSIEIFNIRTRKMR-VVWQTPELFEAPNWSPDGKYLLLNS-EGLLYRLSLAGDPSPEKVDTGFATICNNDHGIS   93 (297)
T ss_dssp             --CCCCEEEEEEETTTTEEE-EEEEESSCCEEEEECTTSSEEEEEE-TTEEEEEESSSCCSCEECCCTTCCCBCSCCEEC
T ss_pred             CCCCcceeEEEEeCCCCcee-eeccCCcceEeeEECCCCCEEEEEc-CCeEEEEeCCCCCCceEeccccccccccceEEC
Confidence            34567899999999877654 4456888999999999999999876 88999999998 7766555444 3667889999


Q ss_pred             CCCCeEEEEec-CCCeEEE--EecCCcceeeeecCCCCCCCCCCccCCCCcceEEEEECCCCCEEE-EecCCCcEEEEEc
Q 021247          112 PKGTTLAVAGG-GSASVKL--WDTATWNLIATLSIPRPEGLKPTDKSSSKKFVLSVAWSPDGRRIA-CGSMDGTISVFDV  187 (315)
Q Consensus       112 ~~~~~~~~~~~-~d~~i~~--~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~-~~s~dg~i~i~d~  187 (315)
                      |+++.+++++. .++...+  ++..+.+. ..+.              ....+..++|+|++++|+ ++..++.+.+|++
T Consensus        94 pdg~~l~~~~~~~~~~~~l~~~~~~~~~~-~~~~--------------~~~~~~~~~~spdg~~l~~~~~~~~~~~l~~~  158 (297)
T 2ojh_A           94 PDGALYAISDKVEFGKSAIYLLPSTGGTP-RLMT--------------KNLPSYWHGWSPDGKSFTYCGIRDQVFDIYSM  158 (297)
T ss_dssp             TTSSEEEEEECTTTSSCEEEEEETTCCCC-EECC--------------SSSSEEEEEECTTSSEEEEEEEETTEEEEEEE
T ss_pred             CCCCEEEEEEeCCCCcceEEEEECCCCce-EEee--------------cCCCccceEECCCCCEEEEEECCCCceEEEEE
Confidence            99998766552 2334444  45444321 1111              111277899999999887 7778999999986


Q ss_pred             cc-ceeeeeecCCccceEEEEEcCCCCcEEEEEeCCCeEEEEeCC-CCeeEEEeecccccEEEEEEcCCCCeEEEEeCC-
Q 021247          188 TR-AKFLHHLEGHFMPVRSLVYSPVDPRVLFSASDDTHVHMYDAE-GKSLVTAMSGHASWVLSVDASPDGAAITTGSSD-  264 (315)
Q Consensus       188 ~~-~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~-~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~d-  264 (315)
                      .. ......+..+...+.++.|+|++..+++++..++.+.+|+.. ....+..+..|...+..+.|+|++++|++++.+ 
T Consensus       159 ~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~  238 (297)
T 2ojh_A          159 DIDSGVETRLTHGEGRNDGPDYSPDGRWIYFNSSRTGQMQIWRVRVDGSSVERITDSAYGDWFPHPSPSGDKVVFVSYDA  238 (297)
T ss_dssp             ETTTCCEEECCCSSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCEEECCCCSEEEEEEEECTTSSEEEEEEEET
T ss_pred             ECCCCcceEcccCCCccccceECCCCCEEEEEecCCCCccEEEECCCCCCcEEEecCCcccCCeEECCCCCEEEEEEcCC
Confidence            32 233455666778899999999544444455568889999875 444556677788889999999999999888776 


Q ss_pred             ----------CcEEEEecCccce--ehcccccccceEEEEEeeCCCEEEEEeCCC
Q 021247          265 ----------RTVKLWDLNMRAA--MQSMTNHTDQVWGVSFRPLGGRVVSVSDDK  307 (315)
Q Consensus       265 ----------~~i~iwd~~~~~~--~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~  307 (315)
                                +.|.+||+..++.  +..+.+|...+..++|+|+|++|++++.|.
T Consensus       239 ~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~  293 (297)
T 2ojh_A          239 DVFDHPRDLDVRVQLMDMDGGNVETLFDLFGGQGTMNSPNWSPDGDEFAYVRYFP  293 (297)
T ss_dssp             TCCSCCSSEEEEEEEEETTSCSCEEEEEEEESTTTSCSCCBCTTSSEEEEEEECC
T ss_pred             CCCcccccCceEEEEEecCCCCceeeeccCCCCcccccceECCCCCEEEEEEecc
Confidence                      5699999987754  333446778899999999999998887764

>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*

Probab=99.96  E-value=1.6e-26  Score=193.52  Aligned_cols=261  Identities=16%  Similarity=0.211  Sum_probs=199.0

Q ss_pred             EEEEeeCCCcEEEEcCCCCcceeeccc-ccc-ceEEEEeCCCCCEE-EEeeCCCeEEEEECCCCceeEEeeCCc-----c
Q 021247           32 LLLTGSLDETVKLWRPDDMQLERTNTG-HCL-GVVSVAAHPSGIIA-ASASLDSFVRVFDVDTNASIATLEASP-----S  103 (315)
Q Consensus        32 ~l~sgs~d~~v~~w~~~~~~~~~~~~~-h~~-~v~~~~~~~~g~~l-~s~~~d~~i~~w~~~~~~~~~~~~~~~-----~  103 (315)
                      ++++++.++.|++||..+.+....+.. +.. .+..+.++|+|..+ +++..++.|++||+.+++.+..+....     .
T Consensus         3 ~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~   82 (337)
T 1pby_B            3 YILAPARPDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLSTPEERVK   82 (337)
T ss_dssp             EEEEEETTTEEEEEETTTTEEEEEEECTTCTTCCCCEEECTTSSEEEEEETTTTEEEEEETTTCCEEEEEECCBTTEEEE
T ss_pred             EEEEcCCCCeEEEEECCCCcEEEEEEcCCCCCCccceEEcCCCCEEEEEeCCCCeEEEEECCCCCeEeeEEcCCcccccc
Confidence            789999999999999988877666542 222 47889999999755 566678999999999988877665422     2


Q ss_pred             cEEEEEECCCCCeEEEEec-----------CCCeEEEEecCCcceeeeecCCCCCCCCCCccCCCCcceEEEEECCCCCE
Q 021247          104 EVWQMQFDPKGTTLAVAGG-----------GSASVKLWDTATWNLIATLSIPRPEGLKPTDKSSSKKFVLSVAWSPDGRR  172 (315)
Q Consensus       104 ~v~~~~~~~~~~~~~~~~~-----------~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~  172 (315)
                      .+..++|+|+++.++++..           .++.|.+||+.+++.+..+....              .+..++|+|++++
T Consensus        83 ~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~--------------~~~~~~~s~dg~~  148 (337)
T 1pby_B           83 SLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEAPR--------------QITMLAWARDGSK  148 (337)
T ss_dssp             CTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEECCS--------------SCCCEEECTTSSC
T ss_pred             cccceEECCCCCEEEEEecccccccccccccCceEEEEECCCCcEEEEEeCCC--------------CcceeEECCCCCE
Confidence            4567899999987766531           46999999999887766654321              2567889999998


Q ss_pred             EEEecCCCcEEEEEcccceeeeeecCCc--cceEEEEEcCCCCcEEEEEeCCC-----------------------eEEE
Q 021247          173 IACGSMDGTISVFDVTRAKFLHHLEGHF--MPVRSLVYSPVDPRVLFSASDDT-----------------------HVHM  227 (315)
Q Consensus       173 l~~~s~dg~i~i~d~~~~~~~~~~~~~~--~~v~~~~~~~~~~~~l~s~~~d~-----------------------~i~~  227 (315)
                      |+++  ++.|++||+.+++....+..+.  .++   .|+|++..+++++..++                       .|.+
T Consensus       149 l~~~--~~~i~~~d~~~~~~~~~~~~~~~~~~~---~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~  223 (337)
T 1pby_B          149 LYGL--GRDLHVMDPEAGTLVEDKPIQSWEAET---YAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLT  223 (337)
T ss_dssp             EEEE--SSSEEEEETTTTEEEEEECSTTTTTTT---BCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEE
T ss_pred             EEEe--CCeEEEEECCCCcEeeeeeccccCCCc---eeCCCccEEeeeccCCCceeeeeeccccccccccccccccceEE
Confidence            8877  6899999999988876665443  332   67775444444443333                       4689


Q ss_pred             EeCCCCeeE-EEeecccccEEEEEEcCCCCeEEEEeCCCcEEEEecCccceehcccccccceEEEEEeeCCCEEEEEeCC
Q 021247          228 YDAEGKSLV-TAMSGHASWVLSVDASPDGAAITTGSSDRTVKLWDLNMRAAMQSMTNHTDQVWGVSFRPLGGRVVSVSDD  306 (315)
Q Consensus       228 wd~~~~~~~-~~~~~~~~~i~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d  306 (315)
                      ||.++++.. .....+...+.+++|+|++++++++  ++.|++||+.+++.+..+..+ ..+.+++|+|+|++|++++.+
T Consensus       224 ~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~--~~~v~~~d~~~~~~~~~~~~~-~~~~~~~~s~dg~~l~~~~~~  300 (337)
T 1pby_B          224 MDLETGEMAMREVRIMDVFYFSTAVNPAKTRAFGA--YNVLESFDLEKNASIKRVPLP-HSYYSVNVSTDGSTVWLGGAL  300 (337)
T ss_dssp             EETTTCCEEEEEEEECSSCEEEEEECTTSSEEEEE--ESEEEEEETTTTEEEEEEECS-SCCCEEEECTTSCEEEEESBS
T ss_pred             EeCCCCCceEeecCCCCCceeeEEECCCCCEEEEe--CCeEEEEECCCCcCcceecCC-CceeeEEECCCCCEEEEEcCC
Confidence            999887664 2334566678899999999998888  799999999988777666543 467899999999999988999


Q ss_pred             CcEEEeec
Q 021247          307 KSISLYEY  314 (315)
Q Consensus       307 ~~i~i~~~  314 (315)
                      +.|++||+
T Consensus       301 ~~i~v~d~  308 (337)
T 1pby_B          301 GDLAAYDA  308 (337)
T ss_dssp             SEEEEEET
T ss_pred             CcEEEEEC
Confidence            99999996

>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A

Probab=99.96  E-value=6.2e-27  Score=210.87  Aligned_cols=282  Identities=14%  Similarity=0.085  Sum_probs=204.8

Q ss_pred             Ccccchh-hhhhccccceEEEEEeecCCCCCcEEEEeeC-CCcEEEEcCCCCcceeeccccccceEEEEeCCCCCEEEEe
Q 021247            1 MKFAGLK-SVENAHEESVWAVTWVPATETRPALLLTGSL-DETVKLWRPDDMQLERTNTGHCLGVVSVAAHPSGIIAASA   78 (315)
Q Consensus         1 ~~~~~~~-~~~~~h~~~v~~v~~~~~~~~~~~~l~sgs~-d~~v~~w~~~~~~~~~~~~~h~~~v~~~~~~~~g~~l~s~   78 (315)
                      |++.++. .+..-+..+|++++|+|+++    .|+.++. ||+++||+.++.+..+....+...+..+.|+|+ ++++++
T Consensus         7 ~~~~~~~~~~~~~~~~~~~~~~~~~DG~----~la~~s~~~g~~~lw~~~~g~~~~lt~~~~~~~~~~~~spd-~~l~~~   81 (582)
T 3o4h_A            7 VEFSRIVRDVERLIAVEKYSLQGVVDGD----KLLVVGFSEGSVNAYLYDGGETVKLNREPINSVLDPHYGVG-RVILVR   81 (582)
T ss_dssp             CCHHHHHHHHHHHHHSCEEEEEEEETTT----EEEEEEEETTEEEEEEEETTEEEECCSSCCSEECEECTTCS-EEEEEE
T ss_pred             ccHHHHHHHHHHHhccchheeecCCCCC----eEEEEEccCCceeEEEEcCCCcEeeecccccccccccCCCC-eEEEEe
Confidence            4444443 33345577999999999886    5787776 999999998665554443333368999999999 777777


Q ss_pred             eC---CCeEEEEECCC--CceeEEeeCCcccEEEEEECCCCCeEEEEecCCCeEEEEecCCcceeeeecCCCCCCCCCCc
Q 021247           79 SL---DSFVRVFDVDT--NASIATLEASPSEVWQMQFDPKGTTLAVAGGGSASVKLWDTATWNLIATLSIPRPEGLKPTD  153 (315)
Q Consensus        79 ~~---d~~i~~w~~~~--~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~  153 (315)
                      +.   +...++|.+..  ......+.... .....+|+|+++.++++...++.+.+||+.+++.......+         
T Consensus        82 ~~~~g~~~~~l~~~~~~~~g~~~~l~~~~-~~~~~~~s~dg~~~~~~s~~~~~~~l~d~~~g~~~~l~~~~---------  151 (582)
T 3o4h_A           82 DVSKGAEQHALFKVNTSRPGEEQRLEAVK-PMRILSGVDTGEAVVFTGATEDRVALYALDGGGLRELARLP---------  151 (582)
T ss_dssp             ECSTTSCCEEEEEEETTSTTCCEECTTSC-SBEEEEEEECSSCEEEEEECSSCEEEEEEETTEEEEEEEES---------
T ss_pred             ccCCCCcceEEEEEeccCCCccccccCCC-CceeeeeCCCCCeEEEEecCCCCceEEEccCCcEEEeecCC---------
Confidence            65   55566655543  22222333222 23456888888765555555556669999877654333110         


Q ss_pred             cCCCCcceEEEEECCCCCEEEEecCC----CcEEEEEcccceeeeeecCCccceEEEEEcCCCCcEEEEEeCCC--eEEE
Q 021247          154 KSSSKKFVLSVAWSPDGRRIACGSMD----GTISVFDVTRAKFLHHLEGHFMPVRSLVYSPVDPRVLFSASDDT--HVHM  227 (315)
Q Consensus       154 ~~~~~~~i~~~~~~~~~~~l~~~s~d----g~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~--~i~~  227 (315)
                             ..+++|+|||++|++++.+    +.|++||+.+++.. .+..|...+..++|+| +++.|+++..++  .|++
T Consensus       152 -------~~~~~~spDG~~la~~~~~~~~~~~i~~~d~~~g~~~-~l~~~~~~~~~~~~Sp-DG~~l~~~~~~~~~~i~~  222 (582)
T 3o4h_A          152 -------GFGFVSDIRGDLIAGLGFFGGGRVSLFTSNLSSGGLR-VFDSGEGSFSSASISP-GMKVTAGLETAREARLVT  222 (582)
T ss_dssp             -------SCEEEEEEETTEEEEEEEEETTEEEEEEEETTTCCCE-EECCSSCEEEEEEECT-TSCEEEEEECSSCEEEEE
T ss_pred             -------CceEEECCCCCEEEEEEEcCCCCeEEEEEcCCCCCce-EeecCCCccccceECC-CCCEEEEccCCCeeEEEE
Confidence                   1578999999999988776    78999999887754 6677888899999999 567777888888  8999


Q ss_pred             EeCCCCeeEEEeecccccEEEEE--------EcCCCCeEEEEeCCCcEEEEecCccceehcccccccceEEEEEeeCCCE
Q 021247          228 YDAEGKSLVTAMSGHASWVLSVD--------ASPDGAAITTGSSDRTVKLWDLNMRAAMQSMTNHTDQVWGVSFRPLGGR  299 (315)
Q Consensus       228 wd~~~~~~~~~~~~~~~~i~~~~--------~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~  299 (315)
                      ||..+++.. .+.+|...+..++        |+|+|.++++++.|+++++|++  ++...   ...+.+.+++|+ +++.
T Consensus       223 ~d~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~g~~~l~~~--g~~~~---~~~~~v~~~~~s-dg~~  295 (582)
T 3o4h_A          223 VDPRDGSVE-DLELPSKDFSSYRPTAITWLGYLPDGRLAVVARREGRSAVFID--GERVE---APQGNHGRVVLW-RGKL  295 (582)
T ss_dssp             ECTTTCCEE-ECCCSCSHHHHHCCSEEEEEEECTTSCEEEEEEETTEEEEEET--TEEEC---CCSSEEEEEEEE-TTEE
T ss_pred             EcCCCCcEE-EccCCCcChhhhhhccccceeEcCCCcEEEEEEcCCcEEEEEE--CCeec---cCCCceEEEEec-CCEE
Confidence            999988777 6677766666666        9999999999999999999999  55544   234678899999 9988


Q ss_pred             EEEEeCCCc---EEEee
Q 021247          300 VVSVSDDKS---ISLYE  313 (315)
Q Consensus       300 l~s~~~d~~---i~i~~  313 (315)
                      +++++.+.+   +.+|+
T Consensus       296 l~~~s~~~~p~~l~~~d  312 (582)
T 3o4h_A          296 VTSHTSLSTPPRIVSLP  312 (582)
T ss_dssp             EEEEEETTEEEEEEEET
T ss_pred             EEEEcCCCCCCeEEEEc
Confidence            888887754   55554

>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24

Probab=99.96  E-value=6e-27  Score=216.11  Aligned_cols=291  Identities=14%  Similarity=0.195  Sum_probs=203.1

Q ss_pred             cceEEEEEeecCCCCCcEEEEeeCCCcEEEEcCCCCcceeecccccc---ceEEEEeCCCCCEEEEeeCC---------C
Q 021247           15 ESVWAVTWVPATETRPALLLTGSLDETVKLWRPDDMQLERTNTGHCL---GVVSVAAHPSGIIAASASLD---------S   82 (315)
Q Consensus        15 ~~v~~v~~~~~~~~~~~~l~sgs~d~~v~~w~~~~~~~~~~~~~h~~---~v~~~~~~~~g~~l~s~~~d---------~   82 (315)
                      ..+.+++|+|++.    ++++ +.||+|++||..+++....+.+|..   .+.+++|+|+|++|++++.+         +
T Consensus        17 ~~~~~~~~spdg~----~~~~-~~dg~i~~~d~~~g~~~~~~~~~~~~~~~v~~~~~SpDg~~l~~~~~~~~~~~~~~~~   91 (723)
T 1xfd_A           17 IHDPEAKWISDTE----FIYR-EQKGTVRLWNVETNTSTVLIEGKKIESLRAIRYEISPDREYALFSYNVEPIYQHSYTG   91 (723)
T ss_dssp             CCCCCCCBSSSSC----BCCC-CSSSCEEEBCGGGCCCEEEECTTTTTTTTCSEEEECTTSSEEEEEESCCCCSSSCCCS
T ss_pred             ccccccEEcCCCc----EEEE-eCCCCEEEEECCCCcEEEEeccccccccccceEEECCCCCEEEEEecCccceeeccee
Confidence            4578899999875    4555 7899999999988887777766664   48999999999999998765         7


Q ss_pred             eEEEEECCCCceeEEeeC---CcccEEEEEECCCCCeEEEEecCCCeEEEEecCCcceeeeecCCCCCCCCCCc------
Q 021247           83 FVRVFDVDTNASIATLEA---SPSEVWQMQFDPKGTTLAVAGGGSASVKLWDTATWNLIATLSIPRPEGLKPTD------  153 (315)
Q Consensus        83 ~i~~w~~~~~~~~~~~~~---~~~~v~~~~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~------  153 (315)
                      .+++||+.+++. ..+..   +...+..++|+|+|+.++++..  +.|++||+.+++........... .....      
T Consensus        92 ~i~~~d~~~~~~-~~l~~~~~~~~~~~~~~~SPdG~~la~~~~--~~i~~~~~~~g~~~~~~~~~~~~-~~~~g~~~~v~  167 (723)
T 1xfd_A           92 YYVLSKIPHGDP-QSLDPPEVSNAKLQYAGWGPKGQQLIFIFE--NNIYYCAHVGKQAIRVVSTGKEG-VIYNGLSDWLY  167 (723)
T ss_dssp             EEEEEESSSCCC-EECCCTTCCSCCCSBCCBCSSTTCEEEEET--TEEEEESSSSSCCEEEECCCBTT-TEEEEECCHHH
T ss_pred             eEEEEECCCCce-EeccCCccccccccccEECCCCCEEEEEEC--CeEEEEECCCCceEEEecCCCCC-ceECcccceeE
Confidence            888999998876 33332   2334778999999998876543  79999999887665443221110 00000      


Q ss_pred             cCCCCcceEEEEECCCCCEEEEecCCC----------------------------------cEEEEEcccceeeeeecCC
Q 021247          154 KSSSKKFVLSVAWSPDGRRIACGSMDG----------------------------------TISVFDVTRAKFLHHLEGH  199 (315)
Q Consensus       154 ~~~~~~~i~~~~~~~~~~~l~~~s~dg----------------------------------~i~i~d~~~~~~~~~~~~~  199 (315)
                      .......+.+++|+|||++|+.++.++                                  .|++||+.+++....+..+
T Consensus       168 ~ee~~~~~~~~~~SpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~l~~~d~~~~~~~~~l~~~  247 (723)
T 1xfd_A          168 EEEILKTHIAHWWSPDGTRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISLHVIGLNGPTHDLEMMPP  247 (723)
T ss_dssp             HHTTSSSSEEEEECTTSSEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEEEEEESSSSCCCEECCCC
T ss_pred             EEEeccCcceEEECCCCCEEEEEEECCCccceEEeeccCCcCCCcceeccCCCCCCCCCeeEEEEEECCCCceeEEeeCC
Confidence            000001247899999999998876542                                  7999999887754555543


Q ss_pred             ------ccceEEEEEcCCCCcEEEEEeC----CCeEEEEeCCCCeeEEEeec-ccccEE----EEEEcCCCCeEEE--Ee
Q 021247          200 ------FMPVRSLVYSPVDPRVLFSASD----DTHVHMYDAEGKSLVTAMSG-HASWVL----SVDASPDGAAITT--GS  262 (315)
Q Consensus       200 ------~~~v~~~~~~~~~~~~l~s~~~----d~~i~~wd~~~~~~~~~~~~-~~~~i~----~~~~~~~~~~l~s--~~  262 (315)
                            ...+..+.|+| +++++++...    +..|++||..+++....+.. +..++.    .++|+|+|+.|+.  +.
T Consensus       248 ~~~~~~~~~~~~~~~Sp-Dg~~l~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~  326 (723)
T 1xfd_A          248 DDPRMREYYITMVKWAT-STKVAVTWLNRAQNVSILTLCDATTGVCTKKHEDESEAWLHRQNEEPVFSKDGRKFFFIRAI  326 (723)
T ss_dssp             CCGGGSSEEEEEEEESS-SSEEEEEEEETTSCEEEEEEEETTTCCEEEEEEEECSSCCCCCCCCCEECTTSCSEEEEEEE
T ss_pred             ccCCCccceeEEEEEeC-CCeEEEEEEcCCCCeEEEEEEeCCCCcceEEEEeccCCEEeccCCCceEcCCCCeEEEEEec
Confidence                  56789999999 5667765543    35799999998876655543 344443    7899999997664  55


Q ss_pred             CCC------cEEEEe-cCccc--eehcccccccceEE-EEEeeCCCEEEEEeCC---CcEEEeecC
Q 021247          263 SDR------TVKLWD-LNMRA--AMQSMTNHTDQVWG-VSFRPLGGRVVSVSDD---KSISLYEYS  315 (315)
Q Consensus       263 ~d~------~i~iwd-~~~~~--~~~~~~~~~~~v~~-~~~s~~~~~l~s~~~d---~~i~i~~~~  315 (315)
                      .++      .|.+|| ...+.  ....+..+...+.. ++|+|+|+.|+..+.+   ++++||+++
T Consensus       327 ~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~~  392 (723)
T 1xfd_A          327 PQGGRGKFYHITVSSSQPNSSNDNIQSITSGDWDVTKILAYDEKGNKIYFLSTEDLPRRRQLYSAN  392 (723)
T ss_dssp             CCSSSSCEEEEEEECSSCCSSSCCCCBSCCSSSCEEEEEEEETTTTEEEEEESSSCTTCCEEEEEC
T ss_pred             ccCCCcceeEEEEEeccCCCCccceeEeecCCeEEEeeeEEcCCCCEEEEEEcCCCCcceEEEEEe
Confidence            677      466677 33333  14455443344554 6999999999766665   889999863

>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}

Probab=99.95  E-value=9.5e-25  Score=184.04  Aligned_cols=272  Identities=13%  Similarity=0.147  Sum_probs=185.0

Q ss_pred             CCCcEEEEcCC--CCccee-eccccccceEEEEeCCCCCEEEEeeC---CCeEEEEECCCCce--eEEeeCCcccEEEEE
Q 021247           38 LDETVKLWRPD--DMQLER-TNTGHCLGVVSVAAHPSGIIAASASL---DSFVRVFDVDTNAS--IATLEASPSEVWQMQ  109 (315)
Q Consensus        38 ~d~~v~~w~~~--~~~~~~-~~~~h~~~v~~~~~~~~g~~l~s~~~---d~~i~~w~~~~~~~--~~~~~~~~~~v~~~~  109 (315)
                      .++.|.+|..+  +.++.. ....+...+..++++|+|+ +++++.   ++.|++|++.++..  +..+..+...+..++
T Consensus        14 ~~~~i~v~~~d~~tg~~~~~~~~~~~~~p~~~a~spdg~-l~~~~~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~p~~~a   92 (347)
T 3hfq_A           14 TSQGIYQGTLDTTAKTLTNDGLLAATQNPTYLALSAKDC-LYSVDKEDDEGGIAAWQIDGQTAHKLNTVVAPGTPPAYVA   92 (347)
T ss_dssp             SCCEEEEEEEETTTTEEEEEEEEEECSCCCCEEECTTCE-EEEEEEETTEEEEEEEEEETTEEEEEEEEEEESCCCSEEE
T ss_pred             CCCCEEEEEEcCCCCeEEEeeeeeccCCcceEEEccCCe-EEEEEecCCCceEEEEEecCCcEEEeeeeecCCCCCEEEE
Confidence            35567777654  444433 2234556678899999999 444443   68999999977653  334344556677899


Q ss_pred             ECCCCCeEEEEecCCCeEEEEecCC-c--ceeeeecCCCCCCCCCCccCCCCcceEEEEECCCCCEEEEecCCCcEEEEE
Q 021247          110 FDPKGTTLAVAGGGSASVKLWDTAT-W--NLIATLSIPRPEGLKPTDKSSSKKFVLSVAWSPDGRRIACGSMDGTISVFD  186 (315)
Q Consensus       110 ~~~~~~~~~~~~~~d~~i~~~d~~~-~--~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~s~dg~i~i~d  186 (315)
                      |+|+++.+++++..++.+.+||+.. +  +.+..+.....   .+. .......+.+++|+|+|+.+++...++.|.+||
T Consensus        93 ~spdg~~l~~~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~---~p~-~~~~~~~~~~~~~spdg~l~v~~~~~~~v~~~~  168 (347)
T 3hfq_A           93 VDEARQLVYSANYHKGTAEVMKIAADGALTLTDTVQHSGH---GPR-PEQDGSHIHYTDLTPDNRLAVIDLGSDKVYVYN  168 (347)
T ss_dssp             EETTTTEEEEEETTTTEEEEEEECTTSCEEEEEEEECCCC---CSS-TTCSSCCEEEEEECTTSCEEEEETTTTEEEEEE
T ss_pred             ECCCCCEEEEEeCCCCEEEEEEeCCCCCeeecceeecCCC---CCC-ccccCCCceEEEECCCCcEEEEeCCCCEEEEEE
Confidence            9999998887776889999999963 2  22222221111   111 112234588999999999667777888999999


Q ss_pred             cc-cceee--eeecC-CccceEEEEEcCCCCcEEEEEeCCCeEEEEeCCC--Cee--EEEeeccc------ccEEEEEEc
Q 021247          187 VT-RAKFL--HHLEG-HFMPVRSLVYSPVDPRVLFSASDDTHVHMYDAEG--KSL--VTAMSGHA------SWVLSVDAS  252 (315)
Q Consensus       187 ~~-~~~~~--~~~~~-~~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~--~~~--~~~~~~~~------~~i~~~~~~  252 (315)
                      +. +++..  ..+.. ....+..++|+|++..++++...++.+.+|+...  ++.  +..+....      ..+..++|+
T Consensus       169 ~~~~g~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~s  248 (347)
T 3hfq_A          169 VSDAGQLSEQSVLTMEAGFGPRHLVFSPDGQYAFLAGELSSQIASLKYDTQTGAFTQLGIVKTIPADYTAHNGAAAIRLS  248 (347)
T ss_dssp             ECTTSCEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESSCTTCCSCCEEEEEEEC
T ss_pred             ECCCCcEEEeeeEEcCCCCCCceEEECCCCCEEEEEeCCCCEEEEEEecCCCCceEEeeeeeecCCCCCCCCcceeEEEC
Confidence            98 44432  22222 2235678999995444566667789999998763  433  22232222      458889999


Q ss_pred             CCCCeE-EEEeCCCcEEEEecCcc---ceehcccccccceEEEEEeeCCCEEEEEeCC-CcEEEeec
Q 021247          253 PDGAAI-TTGSSDRTVKLWDLNMR---AAMQSMTNHTDQVWGVSFRPLGGRVVSVSDD-KSISLYEY  314 (315)
Q Consensus       253 ~~~~~l-~s~~~d~~i~iwd~~~~---~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d-~~i~i~~~  314 (315)
                      |+|++| ++...++.|.+|++...   +.+..+..+...+.+++|+|+|++|++++.+ +.|.+|++
T Consensus       249 pdG~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~  315 (347)
T 3hfq_A          249 HDGHFLYVSNRGYNTLAVFAVTADGHLTLIQQISTEGDFPRDFDLDPTEAFVVVVNQNTDNATLYAR  315 (347)
T ss_dssp             TTSCEEEEEEETTTEEEEEEECGGGCEEEEEEEECSSSCCCEEEECTTSSEEEEEETTTTEEEEEEE
T ss_pred             CCCCEEEEEeCCCCEEEEEEECCCCcEEEeEEEecCCCCcCeEEECCCCCEEEEEEcCCCcEEEEEE
Confidence            999977 56667899999999732   3445555566678899999999998877765 89999965

>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*

Probab=99.94  E-value=4e-25  Score=203.41  Aligned_cols=279  Identities=14%  Similarity=0.184  Sum_probs=199.4

Q ss_pred             cceEEEEEeecCCCCCcEEEEeeCCCcEEEEcCCCCcceeeccccccceEEEEeCCCCCEEEEeeCCCeEEEEECCC---
Q 021247           15 ESVWAVTWVPATETRPALLLTGSLDETVKLWRPDDMQLERTNTGHCLGVVSVAAHPSGIIAASASLDSFVRVFDVDT---   91 (315)
Q Consensus        15 ~~v~~v~~~~~~~~~~~~l~sgs~d~~v~~w~~~~~~~~~~~~~h~~~v~~~~~~~~g~~l~s~~~d~~i~~w~~~~---   91 (315)
                      ..|.+++|+|+ .    .++.+ .|+.|++||..+.+... +..+...+.+++|+|+|+.++.+ .|+.|++|++.+   
T Consensus        82 ~~v~~~~~spd-~----~~~~~-~~~~i~~~d~~~~~~~~-l~~~~~~~~~~~~SpdG~~la~~-~~~~i~v~~~~~~~~  153 (706)
T 2z3z_A           82 FPSFRTLDAGR-G----LVVLF-TQGGLVGFDMLARKVTY-LFDTNEETASLDFSPVGDRVAYV-RNHNLYIARGGKLGE  153 (706)
T ss_dssp             CCCEEEEETTT-T----EEEEE-ETTEEEEEETTTTEEEE-EECCTTCCTTCEECTTSSEEEEE-ETTEEEEEECBCTTS
T ss_pred             cCceeEEECCC-C----eEEEE-ECCEEEEEECCCCceEE-ccCCcccccCCcCCCCCCEEEEE-ECCeEEEEecCcccc
Confidence            57999999997 3    23333 46999999998776543 33456678889999999999885 689999999988   


Q ss_pred             --CceeEEeeCCccc--------------EEEEEECCCCCeEEEEec--------------------------------C
Q 021247           92 --NASIATLEASPSE--------------VWQMQFDPKGTTLAVAGG--------------------------------G  123 (315)
Q Consensus        92 --~~~~~~~~~~~~~--------------v~~~~~~~~~~~~~~~~~--------------------------------~  123 (315)
                        ++.......+...              +..+.|+|+|+.++++..                                .
T Consensus       154 ~~g~~~~~~~~~~~~~~~g~~~~~ee~~~~~~~~~SpDg~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~  233 (706)
T 2z3z_A          154 GMSRAIAVTIDGTETLVYGQAVHQREFGIEKGTFWSPKGSCLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSH  233 (706)
T ss_dssp             CCCCCEESCSCCBTTEEESSCCGGGCTTCCCSEEECTTSSEEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSCCC
T ss_pred             cCCCcEEeccCCCCCeEcccchhhhhcCCCceEEECCCCCEEEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCCCCC
Confidence              7665433333332              478999999998876641                                3


Q ss_pred             CCeEEEEecCCcceeeeecCCCCCCCCCCccCCCCcceEEEEECCCCCEEEEecCCC-----cEEEEEcccceeeeeec-
Q 021247          124 SASVKLWDTATWNLIATLSIPRPEGLKPTDKSSSKKFVLSVAWSPDGRRIACGSMDG-----TISVFDVTRAKFLHHLE-  197 (315)
Q Consensus       124 d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~s~dg-----~i~i~d~~~~~~~~~~~-  197 (315)
                      +..|.+||+.+++.......           ..+...+..++|+|+|++|++++.++     .|++||+.+++....+. 
T Consensus       234 ~~~l~~~d~~~~~~~~~~~~-----------~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~v~~~d~~~g~~~~~~~~  302 (706)
T 2z3z_A          234 HVTVGIYHLATGKTVYLQTG-----------EPKEKFLTNLSWSPDENILYVAEVNRAQNECKVNAYDAETGRFVRTLFV  302 (706)
T ss_dssp             EEEEEEEETTTTEEEECCCC-----------SCTTCEEEEEEECTTSSEEEEEEECTTSCEEEEEEEETTTCCEEEEEEE
T ss_pred             eeEEEEEECCCCceEeeccC-----------CCCceeEeeEEEECCCCEEEEEEeCCCCCeeEEEEEECCCCceeeEEEE
Confidence            46799999987664332210           12344689999999999999877665     89999998883332222 


Q ss_pred             C-Cc---cceEEEEEcC-CCCcEEEEEeCCCeEEEEeCC-CCeeEEEeecccccEEE-EEEcCCCCeEEEEeC-CC----
Q 021247          198 G-HF---MPVRSLVYSP-VDPRVLFSASDDTHVHMYDAE-GKSLVTAMSGHASWVLS-VDASPDGAAITTGSS-DR----  265 (315)
Q Consensus       198 ~-~~---~~v~~~~~~~-~~~~~l~s~~~d~~i~~wd~~-~~~~~~~~~~~~~~i~~-~~~~~~~~~l~s~~~-d~----  265 (315)
                      . +.   ..+..+.|+| .++++++++..|+.+++|+.. .+..+..+..|...+.. ++|+|+++.|+.++. ++    
T Consensus       303 ~~~~~~~~~~~~~~~sp~~dg~~l~~~~~~g~~~l~~~~~~~~~~~~l~~~~~~v~~~~~~spdg~~l~~~~~~~~~~~~  382 (706)
T 2z3z_A          303 ETDKHYVEPLHPLTFLPGSNNQFIWQSRRDGWNHLYLYDTTGRLIRQVTKGEWEVTNFAGFDPKGTRLYFESTEASPLER  382 (706)
T ss_dssp             EECSSCCCCCSCCEECTTCSSEEEEEECTTSSCEEEEEETTSCEEEECCCSSSCEEEEEEECTTSSEEEEEESSSCTTCB
T ss_pred             ccCCCeECccCCceeecCCCCEEEEEEccCCccEEEEEECCCCEEEecCCCCeEEEeeeEEcCCCCEEEEEecCCCCceE
Confidence            1 11   1245678998 245688888889988888765 45566677777777876 799999987765554 44    


Q ss_pred             cEEEEecCccceehcccccccceEEEEEeeCCCEEEEEeCC----CcEEEeec
Q 021247          266 TVKLWDLNMRAAMQSMTNHTDQVWGVSFRPLGGRVVSVSDD----KSISLYEY  314 (315)
Q Consensus       266 ~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d----~~i~i~~~  314 (315)
                      .|..||+..++ ...+. |...+.+++|||+|++|+..+.+    +.|.+||.
T Consensus       383 ~l~~~d~~~~~-~~~l~-~~~~~~~~~~spdg~~l~~~~~~~~~p~~i~l~d~  433 (706)
T 2z3z_A          383 HFYCIDIKGGK-TKDLT-PESGMHRTQLSPDGSAIIDIFQSPTVPRKVTVTNI  433 (706)
T ss_dssp             EEEEEETTCCC-CEESC-CSSSEEEEEECTTSSEEEEEEECSSCSCEEEEEES
T ss_pred             EEEEEEcCCCC-ceecc-CCCceEEEEECCCCCEEEEEecCCCCCcEEEEEEC
Confidence            56666776654 33333 56779999999999998766544    46999985

>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*

Probab=99.94  E-value=1.4e-25  Score=214.58  Aligned_cols=275  Identities=13%  Similarity=0.126  Sum_probs=217.0

Q ss_pred             hccccceEEEEEeecCCCCCcEEEEeeCCCcEEEEcCCC-CcceeeccccccceEEEEeCCCCCEEEEeeCCCeEEEEEC
Q 021247           11 NAHEESVWAVTWVPATETRPALLLTGSLDETVKLWRPDD-MQLERTNTGHCLGVVSVAAHPSGIIAASASLDSFVRVFDV   89 (315)
Q Consensus        11 ~~h~~~v~~v~~~~~~~~~~~~l~sgs~d~~v~~w~~~~-~~~~~~~~~h~~~v~~~~~~~~g~~l~s~~~d~~i~~w~~   89 (315)
                      .+|...+.++.|++.     .++++++.|+.+++|..+. ....+.+..|. .+....|+|+|..++.+ .++.|++|++
T Consensus       200 ~~~~~~v~~~~~s~d-----~l~~~~~~dg~~~l~~~~~~g~~~~~l~~~~-~~~~~~~SpDG~~la~~-~~~~i~~~d~  272 (1045)
T 1k32_A          200 VDMSTHVSSPVIVGH-----RIYFITDIDGFGQIYSTDLDGKDLRKHTSFT-DYYPRHLNTDGRRILFS-KGGSIYIFNP  272 (1045)
T ss_dssp             ECCSSCCEEEEEETT-----EEEEEECTTSSCEEEEEETTSCSCEECCCCC-SSCEEEEEESSSCEEEE-ETTEEEEECT
T ss_pred             cCCCCcccceEEeCC-----EEEEEEeccCceEEEEEeCCCCcceEecCCC-CcceeeEcCCCCEEEEE-eCCEEEEecC
Confidence            678999999999875     2678888899999997543 23334444444 45667999999988877 4899999999


Q ss_pred             CCCceeEEeeC-----------CcccEEEEEEC-CCCCeEEEEecCCCeEEEEecCCcceeeeecCCCCCCCCCCccCCC
Q 021247           90 DTNASIATLEA-----------SPSEVWQMQFD-PKGTTLAVAGGGSASVKLWDTATWNLIATLSIPRPEGLKPTDKSSS  157 (315)
Q Consensus        90 ~~~~~~~~~~~-----------~~~~v~~~~~~-~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~  157 (315)
                      ... .+..+..           +...+..++|+ |+++.++++.  ++.+.+|+...++... +.             .+
T Consensus       273 ~~~-~l~~l~~~~~~~~~~~~~~~~~v~~~~~S~pdG~~la~~~--~~~i~~~~~~~~~~~~-~~-------------~~  335 (1045)
T 1k32_A          273 DTE-KIEKIEIGDLESPEDRIISIPSKFAEDFSPLDGDLIAFVS--RGQAFIQDVSGTYVLK-VP-------------EP  335 (1045)
T ss_dssp             TTC-CEEECCCCCCCBCCSEEEECGGGGEEEEEECGGGCEEEEE--TTEEEEECTTSSBEEE-CS-------------CC
T ss_pred             Cce-EeeeeccCcccccccccccccccceeeecCCCCCEEEEEE--cCEEEEEcCCCCceEE-cc-------------CC
Confidence            543 3334433           22357899999 9998876654  7899999987655332 11             12


Q ss_pred             Cc-ceEEEEECCCCCEEEEecCCCcEE-EEEcccceeeeeecCCccceEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCee
Q 021247          158 KK-FVLSVAWSPDGRRIACGSMDGTIS-VFDVTRAKFLHHLEGHFMPVRSLVYSPVDPRVLFSASDDTHVHMYDAEGKSL  235 (315)
Q Consensus       158 ~~-~i~~~~~~~~~~~l~~~s~dg~i~-i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~  235 (315)
                      .. .+..++|+ +|+.|+.++.++.+. +||+.+++... +.+|...+..++|+| ++++|++++.++.|++||+.+++.
T Consensus       336 ~~~~~~~~~~s-dg~~l~~~s~~~~l~~~~d~~~~~~~~-l~~~~~~~~~~~~Sp-DG~~la~~~~~~~v~~~d~~tg~~  412 (1045)
T 1k32_A          336 LRIRYVRRGGD-TKVAFIHGTREGDFLGIYDYRTGKAEK-FEENLGNVFAMGVDR-NGKFAVVANDRFEIMTVDLETGKP  412 (1045)
T ss_dssp             SCEEEEEECSS-SEEEEEEEETTEEEEEEEETTTCCEEE-CCCCCCSEEEEEECT-TSSEEEEEETTSEEEEEETTTCCE
T ss_pred             CcceEEeeeEc-CCCeEEEEECCCceEEEEECCCCCceE-ecCCccceeeeEECC-CCCEEEEECCCCeEEEEECCCCce
Confidence            22 58899999 999999888888898 99998766443 347778899999999 678899999999999999999888


Q ss_pred             EEEeecccccEEEEEEcCCCCeEEEEeCCC----------cEEEEecCccceehcccccccceEEEEEeeCCCEEEEEeC
Q 021247          236 VTAMSGHASWVLSVDASPDGAAITTGSSDR----------TVKLWDLNMRAAMQSMTNHTDQVWGVSFRPLGGRVVSVSD  305 (315)
Q Consensus       236 ~~~~~~~~~~i~~~~~~~~~~~l~s~~~d~----------~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~  305 (315)
                      .....+|...+.+++|+|+|++|++++.++          .|++||+..++ ...+..|...+.+++|+|+|++|+.++.
T Consensus       413 ~~~~~~~~~~v~~~~~SpDG~~la~~~~~~~~~~~~~~~~~i~l~d~~~g~-~~~l~~~~~~~~~~~~spdG~~l~~~s~  491 (1045)
T 1k32_A          413 TVIERSREAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRK-IFAATTENSHDYAPAFDADSKNLYYLSY  491 (1045)
T ss_dssp             EEEEECSSSCCCCEEECTTSCEEEEEEEECSSTTCSCCEEEEEEEETTTTE-EEECSCSSSBEEEEEECTTSCEEEEEES
T ss_pred             EEeccCCCCCccceEECCCCCeEEEEecCccccccCCCCCeEEEEECCCCc-EEEeeCCCcccCCceEcCCCCEEEEEec
Confidence            777778888899999999999998887654          89999999876 5566778888999999999999999999


Q ss_pred             CCcEEEee
Q 021247          306 DKSISLYE  313 (315)
Q Consensus       306 d~~i~i~~  313 (315)
                      ++..++|+
T Consensus       492 ~~~~~~~~  499 (1045)
T 1k32_A          492 RSLDPSPD  499 (1045)
T ss_dssp             CCCCCEEC
T ss_pred             ccCCcCcc
Confidence            88877775

>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1

Probab=99.94  E-value=1.8e-24  Score=181.49  Aligned_cols=269  Identities=11%  Similarity=0.131  Sum_probs=183.3

Q ss_pred             ccccceEEEEEeecCCCCCcEEEEeeCC-CcEEEEcCC--CCcce--eeccccccceEEEEeCCCCCEEEEee-CCCeEE
Q 021247           12 AHEESVWAVTWVPATETRPALLLTGSLD-ETVKLWRPD--DMQLE--RTNTGHCLGVVSVAAHPSGIIAASAS-LDSFVR   85 (315)
Q Consensus        12 ~h~~~v~~v~~~~~~~~~~~~l~sgs~d-~~v~~w~~~--~~~~~--~~~~~h~~~v~~~~~~~~g~~l~s~~-~d~~i~   85 (315)
                      .|...+.+++|+|+++    +|++++.+ +.|++|+.+  +.+..  ..+..+. .+..++++|+|.++++++ .++.|+
T Consensus        35 ~~~~~~~~~~~spdg~----~l~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~s~dg~~l~~~~~~~~~i~  109 (343)
T 1ri6_A           35 DVPGQVQPMVVSPDKR----YLYVGVRPEFRVLAYRIAPDDGALTFAAESALPG-SLTHISTDHQGQFVFVGSYNAGNVS  109 (343)
T ss_dssp             ECSSCCCCEEECTTSS----EEEEEETTTTEEEEEEECTTTCCEEEEEEEECSS-CCSEEEECTTSSEEEEEETTTTEEE
T ss_pred             ecCCCCceEEECCCCC----EEEEeecCCCeEEEEEecCCCCceeeccccccCC-CCcEEEEcCCCCEEEEEecCCCeEE
Confidence            5677899999999775    57777776 999999986  44432  2333333 788999999999776665 488999


Q ss_pred             EEECCCC---ceeEEeeCCcccEEEEEECCCCCeEEEEecCCCeEEEEecCC-cceeeee--cCCCCCCCCCCccCCCCc
Q 021247           86 VFDVDTN---ASIATLEASPSEVWQMQFDPKGTTLAVAGGGSASVKLWDTAT-WNLIATL--SIPRPEGLKPTDKSSSKK  159 (315)
Q Consensus        86 ~w~~~~~---~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~~d~~~-~~~~~~~--~~~~~~~~~~~~~~~~~~  159 (315)
                      +||+..+   ..+..+.. ...+..++|+|+++.+++++..++.|.+||+.+ ++.....  .....          ...
T Consensus       110 ~~d~~~~~~~~~~~~~~~-~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~----------~~~  178 (343)
T 1ri6_A          110 VTRLEDGLPVGVVDVVEG-LDGCHSANISPDNRTLWVPALKQDRICLFTVSDDGHLVAQDPAEVTTV----------EGA  178 (343)
T ss_dssp             EEEEETTEEEEEEEEECC-CTTBCCCEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEEEECS----------TTC
T ss_pred             EEECCCCccccccccccC-CCCceEEEECCCCCEEEEecCCCCEEEEEEecCCCceeeecccccccC----------CCC
Confidence            9999533   33344433 345788999999998877766889999999987 4433211  11110          112


Q ss_pred             ceEEEEECCCCCEEE-EecCCCcEEEEEccc--cee--eeeec---CC---ccceEEEEEcCCCCcEEEEEeCCCeEEEE
Q 021247          160 FVLSVAWSPDGRRIA-CGSMDGTISVFDVTR--AKF--LHHLE---GH---FMPVRSLVYSPVDPRVLFSASDDTHVHMY  228 (315)
Q Consensus       160 ~i~~~~~~~~~~~l~-~~s~dg~i~i~d~~~--~~~--~~~~~---~~---~~~v~~~~~~~~~~~~l~s~~~d~~i~~w  228 (315)
                      .+..++|+|++++++ ++..++.+.+||+..  ++.  .....   ..   ...+..++|+|++..+++++..++.|.+|
T Consensus       179 ~~~~~~~~pdg~~l~~~~~~~~~i~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~l~v~~~~~~~i~v~  258 (343)
T 1ri6_A          179 GPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHITPDGRHLYACDRTASLITVF  258 (343)
T ss_dssp             CEEEEEECTTSSEEEEEETTTTEEEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEEEEECTTSSEEEEEETTTTEEEEE
T ss_pred             CcceEEECCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEeeccccCccccccCCccceEECCCCCEEEEEecCCCEEEEE
Confidence            367899999999775 455889999999953  332  22221   11   23566899999655555577789999999


Q ss_pred             eCC--C--CeeEEEeecccccEEEEEEcCCCCeEEEEe-CCCcEEEEecC--ccc--eehcccccccceEEEEEeeCCC
Q 021247          229 DAE--G--KSLVTAMSGHASWVLSVDASPDGAAITTGS-SDRTVKLWDLN--MRA--AMQSMTNHTDQVWGVSFRPLGG  298 (315)
Q Consensus       229 d~~--~--~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~-~d~~i~iwd~~--~~~--~~~~~~~~~~~v~~~~~s~~~~  298 (315)
                      |+.  +  .+.+..+..+.. +..++|+|++++|++++ .++.|.+|+++  +++  .+..+.. .....+++|.|+.+
T Consensus       259 d~~~~~~~~~~~~~~~~~~~-~~~~~~s~dg~~l~~~~~~~~~v~v~~~d~~~g~~~~~~~~~~-g~~p~~i~~~~~~~  335 (343)
T 1ri6_A          259 SVSEDGSVLSKEGFQPTETQ-PRGFNVDHSGKYLIAAGQKSHHISVYEIVGEQGLLHEKGRYAV-GQGPMWVVVNAHEG  335 (343)
T ss_dssp             EECTTSCCEEEEEEEECSSS-CCCEEECTTSSEEEEECTTTCEEEEEEEETTTTEEEEEEEEEC-SSSCCEEEEEEEC-
T ss_pred             EEcCCCCceEEeeeecCCCc-cceEEECCCCCEEEEecCCCCeEEEEEEcCCCceeeEcccccc-CCCCeeEEEEcccC
Confidence            987  2  234444444444 88899999999888777 68999999554  443  2333333 24566788888644

>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*

Probab=99.94  E-value=1.2e-24  Score=208.06  Aligned_cols=294  Identities=10%  Similarity=0.037  Sum_probs=214.8

Q ss_pred             hhhccccceEEEEEeecCCCCCcEEEEeeCC------CcEEEEcCCCCcceeeccccccce-------EEEEeCCCCCEE
Q 021247            9 VENAHEESVWAVTWVPATETRPALLLTGSLD------ETVKLWRPDDMQLERTNTGHCLGV-------VSVAAHPSGIIA   75 (315)
Q Consensus         9 ~~~~h~~~v~~v~~~~~~~~~~~~l~sgs~d------~~v~~w~~~~~~~~~~~~~h~~~v-------~~~~~~~~g~~l   75 (315)
                      .+.+|...|.+++|+|++.    .|+.++.+      ..|++|+..+.+ .+.+..|...+       ..++|+|+|+++
T Consensus        47 ~lt~~~~~v~~~~~SPDG~----~la~~s~~~~~~~~~~i~~~d~~~g~-~~~lt~~~~~~~~~~~~~~~~~~SpDg~ll  121 (1045)
T 1k32_A           47 KIVSNLGVINNARFFPDGR----KIAIRVMRGSSLNTADLYFYNGENGE-IKRITYFSGKSTGRRMFTDVAGFDPDGNLI  121 (1045)
T ss_dssp             EEECSSSEEEEEEECTTSS----EEEEEEEESTTCCEEEEEEEETTTTE-EEECCCCCEEEETTEECSEEEEECTTCCEE
T ss_pred             EeeeCCCcccCeEECCCCC----EEEEEEeeccCCCCCeEEEEECCCCC-eEEcccCCCcccccccccccccCCCCCEEE
Confidence            3457999999999999886    57776543      379999987765 45667788877       899999999977


Q ss_pred             EEeeCC------CeEEEEECCCCceeE-------------------------------------------------EeeC
Q 021247           76 ASASLD------SFVRVFDVDTNASIA-------------------------------------------------TLEA  100 (315)
Q Consensus        76 ~s~~~d------~~i~~w~~~~~~~~~-------------------------------------------------~~~~  100 (315)
                      ++++.+      ..|++|++.++....                                                 .+..
T Consensus       122 ~~~~~~~~~~~~~~l~~~~~~~g~~~~l~~~~~~~~~~spG~l~~~~~~~~~~~~~~~~g~~~~~lw~~~~~~~~~~l~~  201 (1045)
T 1k32_A          122 ISTDAMQPFSSMTCLYRVENDGINFVPLNLGPATHILFADGRRVIGRNTFELPHWKGYRGGTRGKIWIEVNSGAFKKIVD  201 (1045)
T ss_dssp             EEECTTSSSTTCCEEEEEEGGGTEEEECCSCSCSEEEEETTEEEEEESCSCCTTSTTCCSTTCCEEEEEEETTEEEEEEC
T ss_pred             EEECCcCCCcccceEEEEECCCCCeEEecCCCcceeeeCCCEEEEeccCCCccccccccCCCcCCEEEECCCCCeEECcC
Confidence            777754      458888876554221                                                 1123


Q ss_pred             CcccEEEEEECCCCCeEEEEecCCCeEEEEecCC-cceeeeecCCC--------CCCC------------------CCCc
Q 021247          101 SPSEVWQMQFDPKGTTLAVAGGGSASVKLWDTAT-WNLIATLSIPR--------PEGL------------------KPTD  153 (315)
Q Consensus       101 ~~~~v~~~~~~~~~~~~~~~~~~d~~i~~~d~~~-~~~~~~~~~~~--------~~~~------------------~~~~  153 (315)
                      |...+..+.|+++  .+++++..++++++|.+.. +.....+....        +.+.                  ....
T Consensus       202 ~~~~v~~~~~s~d--~l~~~~~~dg~~~l~~~~~~g~~~~~l~~~~~~~~~~~SpDG~~la~~~~~~i~~~d~~~~~l~~  279 (1045)
T 1k32_A          202 MSTHVSSPVIVGH--RIYFITDIDGFGQIYSTDLDGKDLRKHTSFTDYYPRHLNTDGRRILFSKGGSIYIFNPDTEKIEK  279 (1045)
T ss_dssp             CSSCCEEEEEETT--EEEEEECTTSSCEEEEEETTSCSCEECCCCCSSCEEEEEESSSCEEEEETTEEEEECTTTCCEEE
T ss_pred             CCCcccceEEeCC--EEEEEEeccCceEEEEEeCCCCcceEecCCCCcceeeEcCCCCEEEEEeCCEEEEecCCceEeee
Confidence            3445666777766  5666777788888887542 11111111000        0000                  0000


Q ss_pred             cCC-----------CCcceEEEEEC-CCCCEEEEecCCCcEEEEEcccceeeeeecCCcc-ceEEEEEcCCCCcEEEEEe
Q 021247          154 KSS-----------SKKFVLSVAWS-PDGRRIACGSMDGTISVFDVTRAKFLHHLEGHFM-PVRSLVYSPVDPRVLFSAS  220 (315)
Q Consensus       154 ~~~-----------~~~~i~~~~~~-~~~~~l~~~s~dg~i~i~d~~~~~~~~~~~~~~~-~v~~~~~~~~~~~~l~s~~  220 (315)
                      ...           +...+..++|+ |+|++|+.++ ++.+++|++..+... .+..|.. .+..+.|+  +++.++.++
T Consensus       280 l~~~~~~~~~~~~~~~~~v~~~~~S~pdG~~la~~~-~~~i~~~~~~~~~~~-~~~~~~~~~~~~~~~s--dg~~l~~~s  355 (1045)
T 1k32_A          280 IEIGDLESPEDRIISIPSKFAEDFSPLDGDLIAFVS-RGQAFIQDVSGTYVL-KVPEPLRIRYVRRGGD--TKVAFIHGT  355 (1045)
T ss_dssp             CCCCCCCBCCSEEEECGGGGEEEEEECGGGCEEEEE-TTEEEEECTTSSBEE-ECSCCSCEEEEEECSS--SEEEEEEEE
T ss_pred             eccCcccccccccccccccceeeecCCCCCEEEEEE-cCEEEEEcCCCCceE-EccCCCcceEEeeeEc--CCCeEEEEE
Confidence            000           12257899999 9999998887 789999999876644 3556666 88999999  567788888


Q ss_pred             CCCeEE-EEeCCCCeeEEEeecccccEEEEEEcCCCCeEEEEeCCCcEEEEecCccceehcccccccceEEEEEeeCCCE
Q 021247          221 DDTHVH-MYDAEGKSLVTAMSGHASWVLSVDASPDGAAITTGSSDRTVKLWDLNMRAAMQSMTNHTDQVWGVSFRPLGGR  299 (315)
Q Consensus       221 ~d~~i~-~wd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~  299 (315)
                      .+..+. +||..+++... +.+|...+..++|+|+|+.|++++.++.|++||+.+++.......|...+.+++|||||++
T Consensus       356 ~~~~l~~~~d~~~~~~~~-l~~~~~~~~~~~~SpDG~~la~~~~~~~v~~~d~~tg~~~~~~~~~~~~v~~~~~SpDG~~  434 (1045)
T 1k32_A          356 REGDFLGIYDYRTGKAEK-FEENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLETGKPTVIERSREAMITDFTISDNSRF  434 (1045)
T ss_dssp             TTEEEEEEEETTTCCEEE-CCCCCCSEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSSSCCCCEEECTTSCE
T ss_pred             CCCceEEEEECCCCCceE-ecCCccceeeeEECCCCCEEEEECCCCeEEEEECCCCceEEeccCCCCCccceEECCCCCe
Confidence            888899 99998776544 3477788999999999999999999999999999988877766678888999999999999


Q ss_pred             EEEEeCCC----------cEEEeec
Q 021247          300 VVSVSDDK----------SISLYEY  314 (315)
Q Consensus       300 l~s~~~d~----------~i~i~~~  314 (315)
                      |++++.++          .|++||+
T Consensus       435 la~~~~~~~~~~~~~~~~~i~l~d~  459 (1045)
T 1k32_A          435 IAYGFPLKHGETDGYVMQAIHVYDM  459 (1045)
T ss_dssp             EEEEEEECSSTTCSCCEEEEEEEET
T ss_pred             EEEEecCccccccCCCCCeEEEEEC
Confidence            99887754          9999986

>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}

Probab=99.94  E-value=9e-25  Score=202.12  Aligned_cols=279  Identities=11%  Similarity=0.099  Sum_probs=201.3

Q ss_pred             cceEEEEEeecCCCCCcEEEEeeCCCcEEEEcCCCCc--ceeeccccccceEEEEeCCCCCEEEEeeCCCeEEEEECCCC
Q 021247           15 ESVWAVTWVPATETRPALLLTGSLDETVKLWRPDDMQ--LERTNTGHCLGVVSVAAHPSGIIAASASLDSFVRVFDVDTN   92 (315)
Q Consensus        15 ~~v~~v~~~~~~~~~~~~l~sgs~d~~v~~w~~~~~~--~~~~~~~h~~~v~~~~~~~~g~~l~s~~~d~~i~~w~~~~~   92 (315)
                      ..|.+++|+|+++    .|++++. +.|++|+..+..  ....+..|...+..+.|+|+|++|+.++ ++.|++||+.++
T Consensus       109 ~~v~~~~~SpDg~----~l~~~~~-~~i~~~d~~~~~~~~~~~l~~~~~~~~~~~~SPDG~~la~~~-~~~i~~~d~~~g  182 (741)
T 2ecf_A          109 TGIVDYQWSPDAQ----RLLFPLG-GELYLYDLKQEGKAAVRQLTHGEGFATDAKLSPKGGFVSFIR-GRNLWVIDLASG  182 (741)
T ss_dssp             EESCCCEECTTSS----EEEEEET-TEEEEEESSSCSTTSCCBCCCSSSCEEEEEECTTSSEEEEEE-TTEEEEEETTTT
T ss_pred             cCcceeEECCCCC----EEEEEeC-CcEEEEECCCCCcceEEEcccCCcccccccCCCCCCEEEEEe-CCcEEEEecCCC
Confidence            3488999999886    5777775 999999998762  3345566778899999999999999887 568999999987


Q ss_pred             ceeEEeeCCccc----------------EEEEEECCCCCeEEEEecCCC-------------------------------
Q 021247           93 ASIATLEASPSE----------------VWQMQFDPKGTTLAVAGGGSA-------------------------------  125 (315)
Q Consensus        93 ~~~~~~~~~~~~----------------v~~~~~~~~~~~~~~~~~~d~-------------------------------  125 (315)
                      +.......+...                +..+.|+|+|+.++++..+.+                               
T Consensus       183 ~~~~~~~~~~~~~~~g~~~~v~~~~~~~~~~~~~SpDg~~l~~~~~d~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~  262 (741)
T 2ecf_A          183 RQMQLTADGSTTIGNGIAEFVADEEMDRHTGYWWAPDDSAIAYARIDESPVPVQKRYEVYADRTDVIEQRYPAAGDANVQ  262 (741)
T ss_dssp             EEEECCCCCCSSEEESCCCHHHHHHSCCCCSEEECTTSSCEEEEEEECTTSCEEEEEEECSSCEEEEEEECCBTTSCCCE
T ss_pred             CEEEeccCCccceeccccceeeeeccccccceEECCCCCEEEEEEEcCCCCceEecCCCCCCcccceEeecCCCCCCCCe
Confidence            765444333322                367899999998876543321                               


Q ss_pred             -eEEEEecCC-cceeeeecCCCCCCCCCCccCCCCcceEEEEECCCCCEEEEecC-----CCcEEEEEcccceeeeeecC
Q 021247          126 -SVKLWDTAT-WNLIATLSIPRPEGLKPTDKSSSKKFVLSVAWSPDGRRIACGSM-----DGTISVFDVTRAKFLHHLEG  198 (315)
Q Consensus       126 -~i~~~d~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~s~-----dg~i~i~d~~~~~~~~~~~~  198 (315)
                       .|.+||+.+ ++...... .          ..+...+..++| |||++|+.++.     +..|++||+.+++....+..
T Consensus       263 ~~l~~~d~~~~~~~~~~~~-~----------~~~~~~~~~~~~-pDg~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~  330 (741)
T 2ecf_A          263 VKLGVISPAEQAQTQWIDL-G----------KEQDIYLARVNW-RDPQHLSFQRQSRDQKKLDLVEVTLASNQQRVLAHE  330 (741)
T ss_dssp             EEEEEECSSTTCCCEEECC-C----------SCSSEEEEEEEE-EETTEEEEEEEETTSSEEEEEEEETTTCCEEEEEEE
T ss_pred             eEEEEEECCCCCceEEecC-C----------CCcceEEEEEEe-CCCCEEEEEEecccCCeEEEEEEECCCCceEEEEEc
Confidence             788888876 65432211 0          124456899999 99999986643     56799999998877665554


Q ss_pred             Ccc----ceEEEEEcCCCCcEEEEEeCCCeEEEEeCC-CCeeEEEeecccccEEEE-EEcCCCCeEE-EEeCCC--cEEE
Q 021247          199 HFM----PVRSLVYSPVDPRVLFSASDDTHVHMYDAE-GKSLVTAMSGHASWVLSV-DASPDGAAIT-TGSSDR--TVKL  269 (315)
Q Consensus       199 ~~~----~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~-~~~~~~~~~~~~~~i~~~-~~~~~~~~l~-s~~~d~--~i~i  269 (315)
                      +..    .+..+.|+|+ ++++++++.|+.+++|... .+. ...+..|...+..+ .|+|+++.|+ +++.++  .+++
T Consensus       331 ~~~~~~~~~~~~~~spd-g~~~~~~~~~g~~~l~~~~~~~~-~~~l~~~~~~v~~~~~~s~dg~~l~~~~~~~~~~~~~l  408 (741)
T 2ecf_A          331 TSPTWVPLHNSLRFLDD-GSILWSSERTGFQHLYRIDSKGK-AAALTHGNWSVDELLAVDEKAGLAYFRAGIESARESQI  408 (741)
T ss_dssp             ECSSCCCCCSCCEECTT-SCEEEEECTTSSCEEEEECSSSC-EEESCCSSSCEEEEEEEETTTTEEEEEECSSCTTCBEE
T ss_pred             CCCCcCCcCCceEECCC-CeEEEEecCCCccEEEEEcCCCC-eeeeeecceEEEeEeEEeCCCCEEEEEEeCCCCceEEE
Confidence            432    3457899994 5588888999877776554 233 66777777788887 5999998765 555555  8999


Q ss_pred             EecCc-cceehcccccccceEEEEEeeCCCEEEEEeCC----CcEEEeec
Q 021247          270 WDLNM-RAAMQSMTNHTDQVWGVSFRPLGGRVVSVSDD----KSISLYEY  314 (315)
Q Consensus       270 wd~~~-~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d----~~i~i~~~  314 (315)
                      |++.. +.....+.. ...+.+++|||+|++|+....+    ..+.+++.
T Consensus       409 ~~~~~~g~~~~~l~~-~~~~~~~~~spdg~~l~~~~~~~~~p~~~~l~~~  457 (741)
T 2ecf_A          409 YAVPLQGGQPQRLSK-APGMHSASFARNASVYVDSWSNNSTPPQIELFRA  457 (741)
T ss_dssp             EEEETTCCCCEECCC-SCSEEEEEECTTSSEEEEEEEETTEEEEEEEEET
T ss_pred             EEEEcCCCCeeeccc-CCCceEEEECCCCCEEEEEecCCCCCCeEEEEEc
Confidence            99864 444555544 5678899999999998765443    35666653

>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A

Probab=99.94  E-value=3.1e-23  Score=175.76  Aligned_cols=280  Identities=13%  Similarity=0.155  Sum_probs=185.2

Q ss_pred             EEEEee----CCCcEEEEcC--CCCcceeeccccccceEEEEeCCCCCEEEEeeCC----CeEEEEECCCC--c--eeEE
Q 021247           32 LLLTGS----LDETVKLWRP--DDMQLERTNTGHCLGVVSVAAHPSGIIAASASLD----SFVRVFDVDTN--A--SIAT   97 (315)
Q Consensus        32 ~l~sgs----~d~~v~~w~~--~~~~~~~~~~~h~~~v~~~~~~~~g~~l~s~~~d----~~i~~w~~~~~--~--~~~~   97 (315)
                      .++.|+    .++.|.+|..  .+.++......+...+..++++|+|++|++++.+    +.|++|++...  .  .+..
T Consensus        15 ~~~vg~y~~~~~~~i~~~~~d~~~g~~~~~~~~~~~~p~~l~~spdg~~l~~~~~~~~~~~~v~~~~~~~~~g~~~~~~~   94 (361)
T 3scy_A           15 TMLVGTYTSGNSKGIYTFRFNEETGESLPLSDAEVANPSYLIPSADGKFVYSVNEFSKDQAAVSAFAFDKEKGTLHLLNT   94 (361)
T ss_dssp             EEEEEECCSSSCCEEEEEEEETTTCCEEEEEEEECSCCCSEEECTTSSEEEEEECCSSTTCEEEEEEEETTTTEEEEEEE
T ss_pred             EEEEEeccCCCCCCEEEEEEeCCCCCEEEeecccCCCCceEEECCCCCEEEEEEccCCCCCcEEEEEEeCCCCcEEEeeE
Confidence            456664    4568989865  3454433322266677889999999999988876    79999998763  3  2333


Q ss_pred             eeCCcccEEEEEECCCCCeEEEEecCCCeEEEEecCCcceeeeecC-CCCCCCCCCccCCCCcceEEEEECCCCCEEEE-
Q 021247           98 LEASPSEVWQMQFDPKGTTLAVAGGGSASVKLWDTATWNLIATLSI-PRPEGLKPTDKSSSKKFVLSVAWSPDGRRIAC-  175 (315)
Q Consensus        98 ~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~-  175 (315)
                      ...+......+++  +++.++++...++.+.+|++.....+..... ....+..+....+....+.+++|+|+|+++++ 
T Consensus        95 ~~~~~~~p~~~~~--dg~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~spdg~~l~~~  172 (361)
T 3scy_A           95 QKTMGADPCYLTT--NGKNIVTANYSGGSITVFPIGQDGALLPASDVIEFKGSGPDKERQTMPHLHCVRITPDGKYLLAD  172 (361)
T ss_dssp             EECSSSCEEEEEE--CSSEEEEEETTTTEEEEEEBCTTSCBCSCSEEEECCCCCSCTTTCSSCCEEEEEECTTSSEEEEE
T ss_pred             eccCCCCcEEEEE--CCCEEEEEECCCCEEEEEEeCCCCcCcccceeEEccCCCCCccccCCCcceEEEECCCCCEEEEE
Confidence            3434455667777  7777877777889999999975433221100 00011111111223344788999999996654 


Q ss_pred             ecCCCcEEEEEcccce-------e------eeeecCCccceEEEEEcCCCCcEEEEEe-CCCeEEEEeCCCCee--EEEe
Q 021247          176 GSMDGTISVFDVTRAK-------F------LHHLEGHFMPVRSLVYSPVDPRVLFSAS-DDTHVHMYDAEGKSL--VTAM  239 (315)
Q Consensus       176 ~s~dg~i~i~d~~~~~-------~------~~~~~~~~~~v~~~~~~~~~~~~l~s~~-~d~~i~~wd~~~~~~--~~~~  239 (315)
                      +..++.|.+|++....       .      ......+...++.++|+|+ +++++.++ .++.|.+||+.++.+  +..+
T Consensus       173 ~~~~~~v~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~spd-g~~l~v~~~~~~~v~v~~~~~g~~~~~~~~  251 (361)
T 3scy_A          173 DLGTDQIHKFNINPNANADNKEKFLTKGTPEAFKVAPGSGPRHLIFNSD-GKFAYLINEIGGTVIAFRYADGMLDEIQTV  251 (361)
T ss_dssp             ETTTTEEEEEEECTTCCTTTCCCCEEEEEEEEEECCTTCCEEEEEECTT-SSEEEEEETTTCEEEEEEEETTEEEEEEEE
T ss_pred             eCCCCEEEEEEEcCCCCcccccceeecccccceecCCCCCCeEEEEcCC-CCEEEEEcCCCCeEEEEEecCCceEEeEEE
Confidence            5568899999886433       1      1112233456789999994 55555444 789999999886644  2222


Q ss_pred             e---cccccEEEEEEcCCCCeEEEEeCC--CcEEEEecC--ccc--eehcccccccceEEEEEeeCCCEEEEEe-CCCcE
Q 021247          240 S---GHASWVLSVDASPDGAAITTGSSD--RTVKLWDLN--MRA--AMQSMTNHTDQVWGVSFRPLGGRVVSVS-DDKSI  309 (315)
Q Consensus       240 ~---~~~~~i~~~~~~~~~~~l~s~~~d--~~i~iwd~~--~~~--~~~~~~~~~~~v~~~~~s~~~~~l~s~~-~d~~i  309 (315)
                      .   .+...+..++|+|+|++|+++..+  +.|.+|+++  .++  .+..+.. ...+.+++|+|+|++|++++ .++.|
T Consensus       252 ~~~~~~~~~~~~i~~spdg~~l~v~~~~~~~~i~v~~~~~~~g~~~~~~~~~~-g~~~~~~~~spdg~~l~~~~~~~~~v  330 (361)
T 3scy_A          252 AADTVNAQGSGDIHLSPDGKYLYASNRLKADGVAIFKVDETNGTLTKVGYQLT-GIHPRNFIITPNGKYLLVACRDTNVI  330 (361)
T ss_dssp             ESCSSCCCCEEEEEECTTSSEEEEEECSSSCEEEEEEECTTTCCEEEEEEEEC-SSCCCEEEECTTSCEEEEEETTTTEE
T ss_pred             ecCCCCCCCcccEEECCCCCEEEEECCCCCCEEEEEEEcCCCCcEEEeeEecC-CCCCceEEECCCCCEEEEEECCCCCE
Confidence            2   233457899999999988666654  899999996  333  3333433 45678999999999988777 67999


Q ss_pred             EEeecC
Q 021247          310 SLYEYS  315 (315)
Q Consensus       310 ~i~~~~  315 (315)
                      .+|+++
T Consensus       331 ~v~~~d  336 (361)
T 3scy_A          331 QIFERD  336 (361)
T ss_dssp             EEEEEC
T ss_pred             EEEEEE
Confidence            998753

>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*

Probab=99.94  E-value=2.2e-23  Score=175.72  Aligned_cols=248  Identities=11%  Similarity=0.071  Sum_probs=192.8

Q ss_pred             cccceEEEEeCCCCCEEEEeeC-------CCeEEEEECCCCceeEEeeCCcccEEEEEECCCCCeEEEEecCCCeEEEEe
Q 021247           59 HCLGVVSVAAHPSGIIAASASL-------DSFVRVFDVDTNASIATLEASPSEVWQMQFDPKGTTLAVAGGGSASVKLWD  131 (315)
Q Consensus        59 h~~~v~~~~~~~~g~~l~s~~~-------d~~i~~w~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~~d  131 (315)
                      ....+..+.++|+|.+++.++.       ++.|.+||..+++.+..+... ..+..++++|+++.++++...++.|.+||
T Consensus        39 ~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~-~~~~~~~~s~dg~~l~v~~~~~~~v~~~d  117 (353)
T 3vgz_A           39 VGKGAYEMAYSQQENALWLATSQSRKLDKGGVVYRLDPVTLEVTQAIHND-LKPFGATINNTTQTLWFGNTVNSAVTAID  117 (353)
T ss_dssp             EESSEEEEEEETTTTEEEEEECCCTTTEESEEEEEECTTTCCEEEEEEES-SCCCSEEEETTTTEEEEEETTTTEEEEEE
T ss_pred             hccCccceEECCCCCEEEEEcCCCcCCCCCccEEEEcCCCCeEEEEEecC-CCcceEEECCCCCEEEEEecCCCEEEEEe
Confidence            3456789999999988877764       568999999999887777643 34678899999998888888889999999


Q ss_pred             cCCcceeeeecCCCCCCCCCCccCCCCcceEEEEECCCCCEEEEec--CCCcEEEEEcccceeeeeecCCccceEEEEEc
Q 021247          132 TATWNLIATLSIPRPEGLKPTDKSSSKKFVLSVAWSPDGRRIACGS--MDGTISVFDVTRAKFLHHLEGHFMPVRSLVYS  209 (315)
Q Consensus       132 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~s--~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~  209 (315)
                      ..+++.+..+..+.....    .......+..++|+|++++++++.  .++.|.+||+.+++....+..+...+..+.|+
T Consensus       118 ~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~s  193 (353)
T 3vgz_A          118 AKTGEVKGRLVLDDRKRT----EEVRPLQPRELVADDATNTVYISGIGKESVIWVVDGGNIKLKTAIQNTGKMSTGLALD  193 (353)
T ss_dssp             TTTCCEEEEEESCCCCCC----SSCCCCEEEEEEEETTTTEEEEEEESSSCEEEEEETTTTEEEEEECCCCTTCCCCEEE
T ss_pred             CCCCeeEEEEecCCCccc----cccCCCCCceEEECCCCCEEEEEecCCCceEEEEcCCCCceEEEecCCCCccceEEEC
Confidence            999888877765322110    001112367899999999877665  57889999999999888877555567889999


Q ss_pred             CCCCcEEEEEeCCCeEEEEeCCCCeeEEEeec----ccccEEEEEEcCCCCeEEEEeC-CCcEEEEecCccceehccccc
Q 021247          210 PVDPRVLFSASDDTHVHMYDAEGKSLVTAMSG----HASWVLSVDASPDGAAITTGSS-DRTVKLWDLNMRAAMQSMTNH  284 (315)
Q Consensus       210 ~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~----~~~~i~~~~~~~~~~~l~s~~~-d~~i~iwd~~~~~~~~~~~~~  284 (315)
                      | +++.++.++.++.|.+||..+++.+..+..    +...+..++++|+++.+++++. ++.|.+||+.+++.+..+...
T Consensus       194 ~-dg~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~  272 (353)
T 3vgz_A          194 S-EGKRLYTTNADGELITIDTADNKILSRKKLLDDGKEHFFINISLDTARQRAFITDSKAAEVLVVDTRNGNILAKVAAP  272 (353)
T ss_dssp             T-TTTEEEEECTTSEEEEEETTTTEEEEEEECCCSSSCCCEEEEEEETTTTEEEEEESSSSEEEEEETTTCCEEEEEECS
T ss_pred             C-CCCEEEEEcCCCeEEEEECCCCeEEEEEEcCCCCCCcccceEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEEcC
Confidence            8 566777788899999999999888776653    4556888999999997766655 489999999988877666543


Q ss_pred             ccceEEEEEeeCCCEEEEEe-CCCcEEEeec
Q 021247          285 TDQVWGVSFRPLGGRVVSVS-DDKSISLYEY  314 (315)
Q Consensus       285 ~~~v~~~~~s~~~~~l~s~~-~d~~i~i~~~  314 (315)
                      .  ...++|+|+|++++.++ .+++|.+||.
T Consensus       273 ~--~~~~~~s~dg~~l~v~~~~~~~v~~~d~  301 (353)
T 3vgz_A          273 E--SLAVLFNPARNEAYVTHRQAGKVSVIDA  301 (353)
T ss_dssp             S--CCCEEEETTTTEEEEEETTTTEEEEEET
T ss_pred             C--CceEEECCCCCEEEEEECCCCeEEEEEC
Confidence            3  25799999999765554 7899999986

>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*

Probab=99.93  E-value=2e-24  Score=198.81  Aligned_cols=283  Identities=16%  Similarity=0.167  Sum_probs=192.2

Q ss_pred             ceEEEEEeecCCCCCcEEEEeeCCCcEEEEcCCCCcce-eeccccc-----------------cceEEEEeCCCCCEEEE
Q 021247           16 SVWAVTWVPATETRPALLLTGSLDETVKLWRPDDMQLE-RTNTGHC-----------------LGVVSVAAHPSGIIAAS   77 (315)
Q Consensus        16 ~v~~v~~~~~~~~~~~~l~sgs~d~~v~~w~~~~~~~~-~~~~~h~-----------------~~v~~~~~~~~g~~l~s   77 (315)
                      .++.+.|.  +.    .+++++.|+ | +||..+++.. +.+..|.                 ..+.+++|+|+ ..++.
T Consensus        27 ~~~~~~w~--g~----~~~~~~~~~-i-~~d~~tg~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~v~~~~~spd-~~~~~   97 (706)
T 2z3z_A           27 YVVGLQWM--GD----NYVFIEGDD-L-VFNKANGKSAQTTRFSAADLNALMPEGCKFQTTDAFPSFRTLDAGR-GLVVL   97 (706)
T ss_dssp             -CTTCEEE--TT----EEEEEETTE-E-EEEC-------CEEEEHHHHHTTC-----------CCCEEEEETTT-TEEEE
T ss_pred             cCCCCcCc--CC----eEEEEeCCc-E-EEECCCCcEeeEEeechhHhhhhccchhccccccccCceeEEECCC-CeEEE
Confidence            45667888  32    477777788 8 9999887762 3332332                 46999999999 55444


Q ss_pred             eeCCCeEEEEECCCCceeEEeeCCcccEEEEEECCCCCeEEEEecCCCeEEEEecCC-----cceeeeecCCCCC---CC
Q 021247           78 ASLDSFVRVFDVDTNASIATLEASPSEVWQMQFDPKGTTLAVAGGGSASVKLWDTAT-----WNLIATLSIPRPE---GL  149 (315)
Q Consensus        78 ~~~d~~i~~w~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~~d~~~-----~~~~~~~~~~~~~---~~  149 (315)
                      + .++.|++||+.+++.... ..+...+..++|+|+|+.++++  .++.|++||+.+     ++...........   +.
T Consensus        98 ~-~~~~i~~~d~~~~~~~~l-~~~~~~~~~~~~SpdG~~la~~--~~~~i~v~~~~~~~~~~g~~~~~~~~~~~~~~~g~  173 (706)
T 2z3z_A           98 F-TQGGLVGFDMLARKVTYL-FDTNEETASLDFSPVGDRVAYV--RNHNLYIARGGKLGEGMSRAIAVTIDGTETLVYGQ  173 (706)
T ss_dssp             E-ETTEEEEEETTTTEEEEE-ECCTTCCTTCEECTTSSEEEEE--ETTEEEEEECBCTTSCCCCCEESCSCCBTTEEESS
T ss_pred             E-ECCEEEEEECCCCceEEc-cCCcccccCCcCCCCCCEEEEE--ECCeEEEEecCcccccCCCcEEeccCCCCCeEccc
Confidence            4 369999999988765443 3445667889999999987664  578999999987     6654332211110   00


Q ss_pred             CCCccCCCCcceEEEEECCCCCEEEEec---------------------------------CCCcEEEEEcccceeeeee
Q 021247          150 KPTDKSSSKKFVLSVAWSPDGRRIACGS---------------------------------MDGTISVFDVTRAKFLHHL  196 (315)
Q Consensus       150 ~~~~~~~~~~~i~~~~~~~~~~~l~~~s---------------------------------~dg~i~i~d~~~~~~~~~~  196 (315)
                      .  ....+...+.+++|+|||++|++++                                 .+..|++||+.+++.....
T Consensus       174 ~--~~~ee~~~~~~~~~SpDg~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~d~~~~~~~~~~  251 (706)
T 2z3z_A          174 A--VHQREFGIEKGTFWSPKGSCLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHHVTVGIYHLATGKTVYLQ  251 (706)
T ss_dssp             C--CGGGCTTCCCSEEECTTSSEEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCEEEEEEEETTTTEEEECC
T ss_pred             c--hhhhhcCCCceEEECCCCCEEEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCCCCCeeEEEEEECCCCceEeec
Confidence            0  0001112357899999999999887                                 4467999999888754433


Q ss_pred             c--CCccceEEEEEcCCCCcEEEEEeCCC-----eEEEEeCCCC-eeEEEee-ccccc---EEEEEEcC--CCCeEEEEe
Q 021247          197 E--GHFMPVRSLVYSPVDPRVLFSASDDT-----HVHMYDAEGK-SLVTAMS-GHASW---VLSVDASP--DGAAITTGS  262 (315)
Q Consensus       197 ~--~~~~~v~~~~~~~~~~~~l~s~~~d~-----~i~~wd~~~~-~~~~~~~-~~~~~---i~~~~~~~--~~~~l~s~~  262 (315)
                      .  .|...+..+.|+| +++.|++++.++     .|++||..++ ....... .+..+   +..+.|+|  +|++++++.
T Consensus       252 ~~~~~~~~~~~~~~sp-dg~~l~~~~~~~~~~~~~v~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~sp~~dg~~l~~~~  330 (706)
T 2z3z_A          252 TGEPKEKFLTNLSWSP-DENILYVAEVNRAQNECKVNAYDAETGRFVRTLFVETDKHYVEPLHPLTFLPGSNNQFIWQSR  330 (706)
T ss_dssp             CCSCTTCEEEEEEECT-TSSEEEEEEECTTSCEEEEEEEETTTCCEEEEEEEEECSSCCCCCSCCEECTTCSSEEEEEEC
T ss_pred             cCCCCceeEeeEEEEC-CCCEEEEEEeCCCCCeeEEEEEECCCCceeeEEEEccCCCeECccCCceeecCCCCEEEEEEc
Confidence            2  4667789999999 566777766554     8999999987 4333222 22222   35689999  999999999


Q ss_pred             CCCcEEEEecC-ccceehcccccccceEE-EEEeeCCCEEEEEeCC-C--cEEEeec
Q 021247          263 SDRTVKLWDLN-MRAAMQSMTNHTDQVWG-VSFRPLGGRVVSVSDD-K--SISLYEY  314 (315)
Q Consensus       263 ~d~~i~iwd~~-~~~~~~~~~~~~~~v~~-~~~s~~~~~l~s~~~d-~--~i~i~~~  314 (315)
                      .|+.+++|.++ .+..+..+..+...+.+ ++|+|+|+.|+.++.+ +  .++||.+
T Consensus       331 ~~g~~~l~~~~~~~~~~~~l~~~~~~v~~~~~~spdg~~l~~~~~~~~~~~~~l~~~  387 (706)
T 2z3z_A          331 RDGWNHLYLYDTTGRLIRQVTKGEWEVTNFAGFDPKGTRLYFESTEASPLERHFYCI  387 (706)
T ss_dssp             TTSSCEEEEEETTSCEEEECCCSSSCEEEEEEECTTSSEEEEEESSSCTTCBEEEEE
T ss_pred             cCCccEEEEEECCCCEEEecCCCCeEEEeeeEEcCCCCEEEEEecCCCCceEEEEEE
Confidence            99999999886 45666677777777877 7999999988765554 3  3555543

>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*

Probab=99.93  E-value=9.2e-24  Score=177.70  Aligned_cols=267  Identities=12%  Similarity=0.081  Sum_probs=182.6

Q ss_pred             cEEEEeeCCCcEEEEcCCCCcceeeccccc-cceEEEEeCCCCCEE-EEeeCCCeEEEEECCCCceeEEeeCCc------
Q 021247           31 ALLLTGSLDETVKLWRPDDMQLERTNTGHC-LGVVSVAAHPSGIIA-ASASLDSFVRVFDVDTNASIATLEASP------  102 (315)
Q Consensus        31 ~~l~sgs~d~~v~~w~~~~~~~~~~~~~h~-~~v~~~~~~~~g~~l-~s~~~d~~i~~w~~~~~~~~~~~~~~~------  102 (315)
                      .++++++.++.|++||..+.+..+.+..+. ..+..+.++|+|+++ ++...++.|++||+.+++.+..+....      
T Consensus        12 ~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~i~~~d~~t~~~~~~~~~~~~~~~~~   91 (349)
T 1jmx_B           12 EYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTFHANLSSVPGEVG   91 (349)
T ss_dssp             EEEEEEETTTEEEEEETTTTEEEEEEECSSCCSSCEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEESCCSTTEEE
T ss_pred             EEEEEeCCCCeEEEEECCCCcEEEEEecCCCCCCceeEECCCCCEEEEEeCCCCcEEEEeCCCCcEEEEEEccccccccc
Confidence            478999999999999998887766655432 257789999999855 566678999999999988777665432      


Q ss_pred             ccEEEEEECCCCCeEEEEecC-----------CCeEEEEecCCcceeeeecCCCCCCCCCCccCCCCcceEEEEECCCCC
Q 021247          103 SEVWQMQFDPKGTTLAVAGGG-----------SASVKLWDTATWNLIATLSIPRPEGLKPTDKSSSKKFVLSVAWSPDGR  171 (315)
Q Consensus       103 ~~v~~~~~~~~~~~~~~~~~~-----------d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~  171 (315)
                      ..+..++|+|+++.++++...           ++.|.+||+.+++....+..           ..+...+.+++|+|+|+
T Consensus        92 ~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~-----------~~~~~~~~~~~~s~dg~  160 (349)
T 1jmx_B           92 RSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRT-----------FPMPRQVYLMRAADDGS  160 (349)
T ss_dssp             ECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEE-----------EECCSSCCCEEECTTSC
T ss_pred             ccccceEECCCCCEEEEEcccccccccccccCCCeEEEEECCCccccceeee-----------ccCCCcccceeECCCCc
Confidence            236788999999988766533           58999999987543321110           00111367899999999


Q ss_pred             EEEEecCCCcEEEEEcccceeeeeecCCcc------------------------ceEEEEEcCCCCcEEEEEeCCCeEEE
Q 021247          172 RIACGSMDGTISVFDVTRAKFLHHLEGHFM------------------------PVRSLVYSPVDPRVLFSASDDTHVHM  227 (315)
Q Consensus       172 ~l~~~s~dg~i~i~d~~~~~~~~~~~~~~~------------------------~v~~~~~~~~~~~~l~s~~~d~~i~~  227 (315)
                       +++++.  .|.+||+.+++....+..+..                        ....+.+++++............+..
T Consensus       161 -l~~~~~--~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~  237 (349)
T 1jmx_B          161 -LYVAGP--DIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLS  237 (349)
T ss_dssp             -EEEESS--SEEEECTTTCCEEEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC-------CCCEEEEEEEE
T ss_pred             -EEEccC--cEEEEeCCCCceeccccccccCCccccCccceeeecCCCcceeEEeeeeeeecCCCcCCccccccceeEEE
Confidence             555543  499999998887766543320                        22344555422111000001112223


Q ss_pred             EeCCCCeeE-EEeecccccEEEEEEcC-CCCeEEEEeCCCcEEEEecCccceehcccccccceEEEEEeeCCCEEEEEeC
Q 021247          228 YDAEGKSLV-TAMSGHASWVLSVDASP-DGAAITTGSSDRTVKLWDLNMRAAMQSMTNHTDQVWGVSFRPLGGRVVSVSD  305 (315)
Q Consensus       228 wd~~~~~~~-~~~~~~~~~i~~~~~~~-~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~  305 (315)
                      +|..+++.. .....+...+..++++| ++++++++  ++.|.+||+.+++.+..+.. ...+.+++|+|+|++|++++.
T Consensus       238 ~~~~~~~~~~~~~~~~~~~~~~~~~sp~dg~~l~~~--~~~v~~~d~~~~~~~~~~~~-~~~~~~~~~s~dg~~l~~~~~  314 (349)
T 1jmx_B          238 VDLKTGKTHTQEFADLTELYFTGLRSPKDPNQIYGV--LNRLAKYDLKQRKLIKAANL-DHTYYCVAFDKKGDKLYLGGT  314 (349)
T ss_dssp             EETTTCCEEEEEEEECSSCEEEEEECSSCTTEEEEE--ESEEEEEETTTTEEEEEEEC-SSCCCEEEECSSSSCEEEESB
T ss_pred             EeccCCcEEecccccCCCcceeeEecCCCCCEEEEE--cCeEEEEECccCeEEEEEcC-CCCccceEECCCCCEEEEecC
Confidence            555544322 12233556788999999 99998888  88999999998887766653 345779999999999988888


Q ss_pred             CCcEEEeec
Q 021247          306 DKSISLYEY  314 (315)
Q Consensus       306 d~~i~i~~~  314 (315)
                      ++.|++||.
T Consensus       315 ~~~v~v~d~  323 (349)
T 1jmx_B          315 FNDLAVFNP  323 (349)
T ss_dssp             SSEEEEEET
T ss_pred             CCeEEEEec
Confidence            999999996

>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}

Probab=99.93  E-value=5.7e-23  Score=171.83  Aligned_cols=231  Identities=8%  Similarity=0.123  Sum_probs=173.3

Q ss_pred             eCCCC-CEEEEeeCCCeEEEEECCCCceeEEeeCCcccEEEEEECCCCCeEEEEecCCCeEEEEecCCcce-eeeecCCC
Q 021247           68 AHPSG-IIAASASLDSFVRVFDVDTNASIATLEASPSEVWQMQFDPKGTTLAVAGGGSASVKLWDTATWNL-IATLSIPR  145 (315)
Q Consensus        68 ~~~~g-~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~~d~~~~~~-~~~~~~~~  145 (315)
                      |.+++ ..+++.+.++.|++||+.+++....+..+.... .++|+|+++.+++++..++.|.+||..+++. ...+... 
T Consensus         5 ~~~~~~~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~-~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~-   82 (331)
T 3u4y_A            5 FQTTSNFGIVVEQHLRRISFFSTDTLEILNQITLGYDFV-DTAITSDCSNVVVTSDFCQTLVQIETQLEPPKVVAIQEG-   82 (331)
T ss_dssp             --CCCCEEEEEEGGGTEEEEEETTTCCEEEEEECCCCEE-EEEECSSSCEEEEEESTTCEEEEEECSSSSCEEEEEEEC-
T ss_pred             EcCCCCEEEEEecCCCeEEEEeCcccceeeeEEccCCcc-eEEEcCCCCEEEEEeCCCCeEEEEECCCCceeEEecccC-
Confidence            44444 557788899999999999998887777666667 9999999998888888789999999988776 4433221 


Q ss_pred             CCCCCCCccCCCCcceEEEEECCCCCEEEEecCCC---cEEEEEcccceeeeeecCCccceEEEEEcCCCCcEEEEEeCC
Q 021247          146 PEGLKPTDKSSSKKFVLSVAWSPDGRRIACGSMDG---TISVFDVTRAKFLHHLEGHFMPVRSLVYSPVDPRVLFSASDD  222 (315)
Q Consensus       146 ~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~s~dg---~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d  222 (315)
                                  .....+++|+|+|++++++..++   .|.+||+.+++.+..+..+. ....++|+|++..++++...+
T Consensus        83 ------------~~~~~~~~~s~dg~~l~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~-~~~~~~~spdg~~l~~~~~~~  149 (331)
T 3u4y_A           83 ------------QSSMADVDITPDDQFAVTVTGLNHPFNMQSYSFLKNKFISTIPIPY-DAVGIAISPNGNGLILIDRSS  149 (331)
T ss_dssp             ------------SSCCCCEEECTTSSEEEECCCSSSSCEEEEEETTTTEEEEEEECCT-TEEEEEECTTSSCEEEEEETT
T ss_pred             ------------CCCccceEECCCCCEEEEecCCCCcccEEEEECCCCCeEEEEECCC-CccceEECCCCCEEEEEecCC
Confidence                        11133489999999998665553   89999999988877766543 458999999655566676777


Q ss_pred             Ce-EEEEeCCCCeeE----EEeecccccEEEEEEcCCCCeE-EEEeCCCcEEEEecCccce---ehcccccccceEEEEE
Q 021247          223 TH-VHMYDAEGKSLV----TAMSGHASWVLSVDASPDGAAI-TTGSSDRTVKLWDLNMRAA---MQSMTNHTDQVWGVSF  293 (315)
Q Consensus       223 ~~-i~~wd~~~~~~~----~~~~~~~~~i~~~~~~~~~~~l-~s~~~d~~i~iwd~~~~~~---~~~~~~~~~~v~~~~~  293 (315)
                      +. |.+|++.....+    .........+..++|+|+|+++ +++..++.|++||+.+++.   +..+..+ ..+..++|
T Consensus       150 ~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~~~~~~~~~~~~~-~~~~~~~~  228 (331)
T 3u4y_A          150 ANTVRRFKIDADGVLFDTGQEFISGGTRPFNITFTPDGNFAFVANLIGNSIGILETQNPENITLLNAVGTN-NLPGTIVV  228 (331)
T ss_dssp             TTEEEEEEECTTCCEEEEEEEEECSSSSEEEEEECTTSSEEEEEETTTTEEEEEECSSTTSCEEEEEEECS-SCCCCEEE
T ss_pred             CceEEEEEECCCCcEeecCCccccCCCCccceEECCCCCEEEEEeCCCCeEEEEECCCCcccceeeeccCC-CCCceEEE
Confidence            78 999998753222    1222334568899999999865 5555689999999998877   6666543 56788999


Q ss_pred             eeCCCEEEEE-eCCCcEEEeec
Q 021247          294 RPLGGRVVSV-SDDKSISLYEY  314 (315)
Q Consensus       294 s~~~~~l~s~-~~d~~i~i~~~  314 (315)
                      +|+|++|+.+ ..++.|.+||.
T Consensus       229 spdg~~l~v~~~~~~~i~~~d~  250 (331)
T 3u4y_A          229 SRDGSTVYVLTESTVDVFNFNQ  250 (331)
T ss_dssp             CTTSSEEEEECSSEEEEEEEET
T ss_pred             CCCCCEEEEEEcCCCEEEEEEC
Confidence            9999977654 45788999986

>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}

Probab=99.93  E-value=8e-24  Score=173.58  Aligned_cols=234  Identities=17%  Similarity=0.171  Sum_probs=174.2

Q ss_pred             hhccccceEEEEEeecCCCCCcEEEEeeCCCcEEEEcCCC-Ccceeecccc-ccceEEEEeCCCCCEEEEee--CCCeEE
Q 021247           10 ENAHEESVWAVTWVPATETRPALLLTGSLDETVKLWRPDD-MQLERTNTGH-CLGVVSVAAHPSGIIAASAS--LDSFVR   85 (315)
Q Consensus        10 ~~~h~~~v~~v~~~~~~~~~~~~l~sgs~d~~v~~w~~~~-~~~~~~~~~h-~~~v~~~~~~~~g~~l~s~~--~d~~i~   85 (315)
                      ...|...|.+++|+|+++    +|++++ ++.|++|+..+ .+......++ ...+.++.|+|+|+++++++  .++..+
T Consensus        37 ~~~~~~~v~~~~~spdg~----~l~~~~-~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~  111 (297)
T 2ojh_A           37 VWQTPELFEAPNWSPDGK----YLLLNS-EGLLYRLSLAGDPSPEKVDTGFATICNNDHGISPDGALYAISDKVEFGKSA  111 (297)
T ss_dssp             EEEESSCCEEEEECTTSS----EEEEEE-TTEEEEEESSSCCSCEECCCTTCCCBCSCCEECTTSSEEEEEECTTTSSCE
T ss_pred             eccCCcceEeeEECCCCC----EEEEEc-CCeEEEEeCCCCCCceEeccccccccccceEECCCCCEEEEEEeCCCCcce
Confidence            456888999999999876    577765 88999999988 7766666555 36788999999999999988  334455


Q ss_pred             EE--ECCCCceeEEeeCCcccEEEEEECCCCCeEEEEecCCCeEEEEecCC--cceeeeecCCCCCCCCCCccCCCCcce
Q 021247           86 VF--DVDTNASIATLEASPSEVWQMQFDPKGTTLAVAGGGSASVKLWDTAT--WNLIATLSIPRPEGLKPTDKSSSKKFV  161 (315)
Q Consensus        86 ~w--~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~~d~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~i  161 (315)
                      +|  ++.++. ...+..+ ..+..++|+|+++.+++++..++.+++|++..  .+. ..+             ..+...+
T Consensus       112 l~~~~~~~~~-~~~~~~~-~~~~~~~~spdg~~l~~~~~~~~~~~l~~~~~~~~~~-~~~-------------~~~~~~~  175 (297)
T 2ojh_A          112 IYLLPSTGGT-PRLMTKN-LPSYWHGWSPDGKSFTYCGIRDQVFDIYSMDIDSGVE-TRL-------------THGEGRN  175 (297)
T ss_dssp             EEEEETTCCC-CEECCSS-SSEEEEEECTTSSEEEEEEEETTEEEEEEEETTTCCE-EEC-------------CCSSSCE
T ss_pred             EEEEECCCCc-eEEeecC-CCccceEECCCCCEEEEEECCCCceEEEEEECCCCcc-eEc-------------ccCCCcc
Confidence            55  444444 3344333 34888999999998887888899999998642  222 111             1223458


Q ss_pred             EEEEECCCCCEEEEec-CCCcEEEEEcc-cceeeeeecCCccceEEEEEcCCCCcEEEEEeCC-----------CeEEEE
Q 021247          162 LSVAWSPDGRRIACGS-MDGTISVFDVT-RAKFLHHLEGHFMPVRSLVYSPVDPRVLFSASDD-----------THVHMY  228 (315)
Q Consensus       162 ~~~~~~~~~~~l~~~s-~dg~i~i~d~~-~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d-----------~~i~~w  228 (315)
                      .+++|+|++++|+.++ .++.+.+|++. .+.....+..|...+..+.|+| ++++|+.++.+           +.|++|
T Consensus       176 ~~~~~s~dg~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~s~-dg~~l~~~~~~~~~~~~~~~~~~~l~~~  254 (297)
T 2ojh_A          176 DGPDYSPDGRWIYFNSSRTGQMQIWRVRVDGSSVERITDSAYGDWFPHPSP-SGDKVVFVSYDADVFDHPRDLDVRVQLM  254 (297)
T ss_dssp             EEEEECTTSSEEEEEECTTSSCEEEEEETTSSCEEECCCCSEEEEEEEECT-TSSEEEEEEEETTCCSCCSSEEEEEEEE
T ss_pred             ccceECCCCCEEEEEecCCCCccEEEECCCCCCcEEEecCCcccCCeEECC-CCCEEEEEEcCCCCCcccccCceEEEEE
Confidence            8999999999887655 58899999886 4555667777778899999999 55666666554           579999


Q ss_pred             eCCCCee--EEEeecccccEEEEEEcCCCCeEEEEeCCC
Q 021247          229 DAEGKSL--VTAMSGHASWVLSVDASPDGAAITTGSSDR  265 (315)
Q Consensus       229 d~~~~~~--~~~~~~~~~~i~~~~~~~~~~~l~s~~~d~  265 (315)
                      |+++++.  +..+.+|...+..++|+|+++.|++++.+.
T Consensus       255 d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~  293 (297)
T 2ojh_A          255 DMDGGNVETLFDLFGGQGTMNSPNWSPDGDEFAYVRYFP  293 (297)
T ss_dssp             ETTSCSCEEEEEEEESTTTSCSCCBCTTSSEEEEEEECC
T ss_pred             ecCCCCceeeeccCCCCcccccceECCCCCEEEEEEecc
Confidence            9987755  334457888899999999999988877654

>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}

Probab=99.93  E-value=1.3e-24  Score=200.38  Aligned_cols=299  Identities=14%  Similarity=0.149  Sum_probs=203.8

Q ss_pred             Ccccchhhhhhccc-cceEEEEEeecCCCCCcEEEEeeCCCcEEEEcCCCCcceeecccccc---ceEEEEeCCCCCEEE
Q 021247            1 MKFAGLKSVENAHE-ESVWAVTWVPATETRPALLLTGSLDETVKLWRPDDMQLERTNTGHCL---GVVSVAAHPSGIIAA   76 (315)
Q Consensus         1 ~~~~~~~~~~~~h~-~~v~~v~~~~~~~~~~~~l~sgs~d~~v~~w~~~~~~~~~~~~~h~~---~v~~~~~~~~g~~l~   76 (315)
                      |+..-++.+....- ..-..++|+|++.     ++..+.|+.|++|+..+++......+|..   .+.+++|+|+|++|+
T Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~s~dg~-----~~~~~~d~~i~~~~~~~g~~~~~~~~~~~~~~~~~~~~~SpDg~~la   75 (719)
T 1z68_A            1 MRALTLKDILNGTFSYKTFFPNWISGQE-----YLHQSADNNIVLYNIETGQSYTILSNRTMKSVNASNYGLSPDRQFVY   75 (719)
T ss_dssp             CBCCCHHHHHHTTTCCCCCCCEESSSSE-----EEEECTTSCEEEEESSSCCEEEEECHHHHHTTTCSEEEECTTSSEEE
T ss_pred             CCcccHHHHhcCcccCCCCccEECCCCe-----EEEEcCCCCEEEEEcCCCcEEEEEccccccccceeeEEECCCCCeEE
Confidence            44455555544321 1234789999773     44445699999999998887666665554   489999999999999


Q ss_pred             EeeC---------CCeEEEEECCCCceeEEeeCCcccEEEEEECCCCCeEEEEecCCCeEEEEecCCcceeeeecCCCCC
Q 021247           77 SASL---------DSFVRVFDVDTNASIATLEASPSEVWQMQFDPKGTTLAVAGGGSASVKLWDTATWNLIATLSIPRPE  147 (315)
Q Consensus        77 s~~~---------d~~i~~w~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~  147 (315)
                      .++.         |+.|++||+.+++.+.... -...+..++|+|+|+.++++  .++.|++||+.+++...... ....
T Consensus        76 ~~~~~~~~~~~s~~~~i~~~d~~~g~~~~~~~-l~~~~~~~~~SPDG~~la~~--~~~~i~~~~~~~g~~~~l~~-~~~~  151 (719)
T 1z68_A           76 LESDYSKLWRYSYTATYYIYDLSNGEFVRGNE-LPRPIQYLCWSPVGSKLAYV--YQNNIYLKQRPGDPPFQITF-NGRE  151 (719)
T ss_dssp             EEEEEEECSSSCEEEEEEEEETTTTEECCSSC-CCSSBCCEEECSSTTCEEEE--ETTEEEEESSTTSCCEECCC-CCBT
T ss_pred             EEecCceeEEeecceEEEEEECCCCcccccee-cCcccccceECCCCCEEEEE--ECCeEEEEeCCCCCcEEEec-CCCc
Confidence            8876         7899999999887621011 12457889999999988765  37899999998776543221 1100


Q ss_pred             CCCCCccCCCCcc---------eEEEEECCCCCEEEEecCCC----------------------------------cEEE
Q 021247          148 GLKPTDKSSSKKF---------VLSVAWSPDGRRIACGSMDG----------------------------------TISV  184 (315)
Q Consensus       148 ~~~~~~~~~~~~~---------i~~~~~~~~~~~l~~~s~dg----------------------------------~i~i  184 (315)
                      .   ....++..+         ..+++|+|||++|+.++.|.                                  .|++
T Consensus       152 ~---~v~~g~~~~v~~ee~~~~~~~~~wSPDG~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~~yp~~g~~~~~~~l~~  228 (719)
T 1z68_A          152 N---KIFNGIPDWVYEEEMLATKYALWWSPNGKFLAYAEFNDTDIPVIAYSYYGDEQYPRTINIPYPKAGAKNPVVRIFI  228 (719)
T ss_dssp             T---TEEESSCCHHHHHHTTCSSCCEEECTTSSEEEEEEEECTTSCEEEEEECCSSSSCEEEEEECCBTTSCCCEEEEEE
T ss_pred             C---CeEcccccceeeeecccCcccEEECCCCCEEEEEEECCCCCceEEeeccCCCCCccceeecCCCCCCCCCeeEEEE
Confidence            0   000011111         25899999999999887542                                  7889


Q ss_pred             EEcccceee--------eeecCCccceEEEEEcCCCCcEEEEEeCC----CeEEEEe----CCCCeeEEEe----ecccc
Q 021247          185 FDVTRAKFL--------HHLEGHFMPVRSLVYSPVDPRVLFSASDD----THVHMYD----AEGKSLVTAM----SGHAS  244 (315)
Q Consensus       185 ~d~~~~~~~--------~~~~~~~~~v~~~~~~~~~~~~l~s~~~d----~~i~~wd----~~~~~~~~~~----~~~~~  244 (315)
                      ||+.+++..        ..+.+|...+..++|+|+ ++++++....    ..|.+||    ..+++....+    .+|..
T Consensus       229 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SpD-~~~~~~~~~~~~~~~~l~~~d~~~~~~~g~~~~~~~~~~~~~~~  307 (719)
T 1z68_A          229 IDTTYPAYVGPQEVPVPAMIASSDYYFSWLTWVTD-ERVCLQWLKRVQNVSVLSICDFREDWQTWDCPKTQEHIEESRTG  307 (719)
T ss_dssp             EESSCHHHHCCEECCCCHHHHTSCEEEEEEEESSS-SEEEEEEEESSTTEEEEEEEEECSSSSSEECCGGGEEEEECSSS
T ss_pred             EECCCCCccceeEccCCccCCCCcceEEEeEEeCC-CeEEEEEeccccCeEEEEEEcccCCCCCCceEEEEecccccCCc
Confidence            999877642        123457778999999995 6777764432    3588899    7776654444    46677


Q ss_pred             cEE-----EEEEcCCCCeEE--EEeCCC--cEEEEecCccceehcccccccceEEEEEeeCCCEEEEEeCC-----CcEE
Q 021247          245 WVL-----SVDASPDGAAIT--TGSSDR--TVKLWDLNMRAAMQSMTNHTDQVWGVSFRPLGGRVVSVSDD-----KSIS  310 (315)
Q Consensus       245 ~i~-----~~~~~~~~~~l~--s~~~d~--~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d-----~~i~  310 (315)
                      ++.     .+.|+|+|+.++  +...++  .|.+|++..++ ...+..+...+..+.++ +++.|+..+.+     ++++
T Consensus       308 ~~~~~~~~~~~~spdg~~l~~~~~~~~g~~~l~~~~~~~~~-~~~lt~~~~~v~~~~~~-d~~~i~~~~~~~~~~~~~~~  385 (719)
T 1z68_A          308 WAGGFFVSTPVFSYDAISYYKIFSDKDGYKHIHYIKDTVEN-AIQITSGKWEAINIFRV-TQDSLFYSSNEFEEYPGRRN  385 (719)
T ss_dssp             CSSSSSCCCCEECTTSSCEEEEEECTTSCEEEEEESSCSTT-CEECSCSSSCEEEEEEE-CSSEEEEEESCGGGCTTCBE
T ss_pred             eEccccCCccEECCCCCeEEEEEEccCCceEEEEEECCCCc-eEecccCceEEEEEEEE-eCCEEEEEEecCCCCCceEE
Confidence            776     789999998554  455566  46666776655 34455555668888888 88888776665     8899


Q ss_pred             Eeec
Q 021247          311 LYEY  314 (315)
Q Consensus       311 i~~~  314 (315)
                      ||.+
T Consensus       386 l~~~  389 (719)
T 1z68_A          386 IYRI  389 (719)
T ss_dssp             EEEE
T ss_pred             EEEE
Confidence            9975

>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24

Probab=99.93  E-value=1.3e-23  Score=193.78  Aligned_cols=283  Identities=13%  Similarity=0.062  Sum_probs=191.7

Q ss_pred             hhcccc---ceEEEEEeecCCCCCcEEEEeeCC---------CcEEEEcCCCCccee--eccccccceEEEEeCCCCCEE
Q 021247           10 ENAHEE---SVWAVTWVPATETRPALLLTGSLD---------ETVKLWRPDDMQLER--TNTGHCLGVVSVAAHPSGIIA   75 (315)
Q Consensus        10 ~~~h~~---~v~~v~~~~~~~~~~~~l~sgs~d---------~~v~~w~~~~~~~~~--~~~~h~~~v~~~~~~~~g~~l   75 (315)
                      ...|..   .|.+++|+|+++    .|++++.+         +.+.+||.++.+...  ...+|...+..+.|+|+|+.|
T Consensus        53 ~~~~~~~~~~v~~~~~SpDg~----~l~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~~~~SPdG~~l  128 (723)
T 1xfd_A           53 IEGKKIESLRAIRYEISPDRE----YALFSYNVEPIYQHSYTGYYVLSKIPHGDPQSLDPPEVSNAKLQYAGWGPKGQQL  128 (723)
T ss_dssp             ECTTTTTTTTCSEEEECTTSS----EEEEEESCCCCSSSCCCSEEEEEESSSCCCEECCCTTCCSCCCSBCCBCSSTTCE
T ss_pred             eccccccccccceEEECCCCC----EEEEEecCccceeecceeeEEEEECCCCceEeccCCccccccccccEECCCCCEE
Confidence            344544   499999999876    58888764         778899998776522  223455558899999999999


Q ss_pred             EEeeCCCeEEEEECCCCceeEEeeCCcccE------------------EEEEECCCCCeEEEEecCC-------------
Q 021247           76 ASASLDSFVRVFDVDTNASIATLEASPSEV------------------WQMQFDPKGTTLAVAGGGS-------------  124 (315)
Q Consensus        76 ~s~~~d~~i~~w~~~~~~~~~~~~~~~~~v------------------~~~~~~~~~~~~~~~~~~d-------------  124 (315)
                      +.++. +.|++||+.+++.......+...+                  ..++|+|+|+.++++...+             
T Consensus       129 a~~~~-~~i~~~~~~~g~~~~~~~~~~~~~~~~g~~~~v~~ee~~~~~~~~~~SpDg~~la~~~~~~~~~~~~~~~~~~~  207 (723)
T 1xfd_A          129 IFIFE-NNIYYCAHVGKQAIRVVSTGKEGVIYNGLSDWLYEEEILKTHIAHWWSPDGTRLAYAAINDSRVPIMELPTYTG  207 (723)
T ss_dssp             EEEET-TEEEEESSSSSCCEEEECCCBTTTEEEEECCHHHHHTTSSSSEEEEECTTSSEEEEEEEECTTSCEEEECCCSS
T ss_pred             EEEEC-CeEEEEECCCCceEEEecCCCCCceECcccceeEEEEeccCcceEEECCCCCEEEEEEECCCccceEEeeccCC
Confidence            98875 799999999887766554433322                  6899999999887665332             


Q ss_pred             --------------------CeEEEEecCCcceeeeecCCCCCCCCCCccCCCCcceEEEEECCCCCEEEEecC----CC
Q 021247          125 --------------------ASVKLWDTATWNLIATLSIPRPEGLKPTDKSSSKKFVLSVAWSPDGRRIACGSM----DG  180 (315)
Q Consensus       125 --------------------~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~s~----dg  180 (315)
                                          .+|++||+.+++....+..+.       ....+...+..++|+|||+++++.+.    +.
T Consensus       208 ~~~~~~~~~~~~~~G~~~~~~~l~~~d~~~~~~~~~l~~~~-------~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~  280 (723)
T 1xfd_A          208 SIYPTVKPYHYPKAGSENPSISLHVIGLNGPTHDLEMMPPD-------DPRMREYYITMVKWATSTKVAVTWLNRAQNVS  280 (723)
T ss_dssp             SSSCCCEEEECCBTTSCCCEEEEEEEESSSSCCCEECCCCC-------CGGGSSEEEEEEEESSSSEEEEEEEETTSCEE
T ss_pred             cCCCcceeccCCCCCCCCCeeEEEEEECCCCceeEEeeCCc-------cCCCccceeEEEEEeCCCeEEEEEEcCCCCeE
Confidence                                268888887765433332110       01112456889999999998876543    35


Q ss_pred             cEEEEEcccceeeeeecC-Cccce----EEEEEcCCCCcEEEE-EeCCC------eEEEEe-CCCCe--eEEEeeccccc
Q 021247          181 TISVFDVTRAKFLHHLEG-HFMPV----RSLVYSPVDPRVLFS-ASDDT------HVHMYD-AEGKS--LVTAMSGHASW  245 (315)
Q Consensus       181 ~i~i~d~~~~~~~~~~~~-~~~~v----~~~~~~~~~~~~l~s-~~~d~------~i~~wd-~~~~~--~~~~~~~~~~~  245 (315)
                      .|++||+.+++....+.. +...+    ..+.|+|++..+++. +..++      .|.+|| ..++.  ....+..+...
T Consensus       281 ~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~~~~~  360 (723)
T 1xfd_A          281 ILTLCDATTGVCTKKHEDESEAWLHRQNEEPVFSKDGRKFFFIRAIPQGGRGKFYHITVSSSQPNSSNDNIQSITSGDWD  360 (723)
T ss_dssp             EEEEEETTTCCEEEEEEEECSSCCCCCCCCCEECTTSCSEEEEEEECCSSSSCEEEEEEECSSCCSSSCCCCBSCCSSSC
T ss_pred             EEEEEeCCCCcceEEEEeccCCEEeccCCCceEcCCCCeEEEEEecccCCCcceeEEEEEeccCCCCccceeEeecCCeE
Confidence            799999988876555433 22333    377999965555554 55677      577788 44443  13344433334


Q ss_pred             EEE-EEEcCCCCeEEEEeCC---CcEEEEecCccc--eehcccc---cccceEEEEEeeCCCEEEEEe
Q 021247          246 VLS-VDASPDGAAITTGSSD---RTVKLWDLNMRA--AMQSMTN---HTDQVWGVSFRPLGGRVVSVS  304 (315)
Q Consensus       246 i~~-~~~~~~~~~l~s~~~d---~~i~iwd~~~~~--~~~~~~~---~~~~v~~~~~s~~~~~l~s~~  304 (315)
                      +.. ++|+|+++.|+..+.+   +.+++|+++...  ....+..   |...+..++|+|+|++|+...
T Consensus       361 ~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~spdg~~l~~~~  428 (723)
T 1xfd_A          361 VTKILAYDEKGNKIYFLSTEDLPRRRQLYSANTVGNFNRQCLSCDLVENCTYFSASFSHSMDFFLLKC  428 (723)
T ss_dssp             EEEEEEEETTTTEEEEEESSSCTTCCEEEEECSSTTCCCBCSSTTSSSSCCCCEEEECTTSSEEEEEC
T ss_pred             EEeeeEEcCCCCEEEEEEcCCCCcceEEEEEeCCCCCCcceecccccCCCCeEEEEECCCCCEEEEEc
Confidence            444 6899999988766555   789999986432  2333433   566788999999999887543

>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A

Probab=99.92  E-value=1.2e-23  Score=182.24  Aligned_cols=222  Identities=18%  Similarity=0.135  Sum_probs=158.3

Q ss_pred             CeEEEEECCCCceeEEeeCCcccEEEEEECCCCCeEEEEecCCCeEEEEecCCcceeeeecCCCCCC---CCCCccCCCC
Q 021247           82 SFVRVFDVDTNASIATLEASPSEVWQMQFDPKGTTLAVAGGGSASVKLWDTATWNLIATLSIPRPEG---LKPTDKSSSK  158 (315)
Q Consensus        82 ~~i~~w~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~---~~~~~~~~~~  158 (315)
                      +.+++|+....       .....+..+++++++..++ +++.++ +++|+.......... ......   ..+.....+.
T Consensus        23 ~~vri~~~~~~-------~~~~~~n~lavs~~~~~l~-~~~~dg-v~v~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~   92 (434)
T 2oit_A           23 KKVRIFDSPEE-------LPKERSSLLAVSNKYGLVF-AGGASG-LQIFPTKNLLIQNKP-GDDPNKIVDKVQGLLVPMK   92 (434)
T ss_dssp             CEEECSCCCSS-------CCCSCCBCEEEETTTTEEE-EEETTE-EEEEEHHHHCCCCCT-TCCTTCEEECCCCEEECCS
T ss_pred             eeEEecCCccc-------cCCCCccEEEEecCCCEEE-EECCCE-EEEEEchHhhhhccc-ccCcccccccCccccccCC
Confidence            46777764311       1233467888999888665 455565 899886432110000 000000   0000111234


Q ss_pred             cceEEEEECCCCCEEE----EecCCCcEEEEEcccc--------ee---eeeecCCccceEEEEEcCCCCcEEEEEeCCC
Q 021247          159 KFVLSVAWSPDGRRIA----CGSMDGTISVFDVTRA--------KF---LHHLEGHFMPVRSLVYSPVDPRVLFSASDDT  223 (315)
Q Consensus       159 ~~i~~~~~~~~~~~l~----~~s~dg~i~i~d~~~~--------~~---~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~  223 (315)
                      ..|.+++|+|++++|+    +|+.|+.|++||+.+.        +.   ...+.+|...|.+++|+|.++.+|++++.|+
T Consensus        93 ~~v~~l~~spdg~~lav~~~sgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~las~s~Dg  172 (434)
T 2oit_A           93 FPIHHLALSCDNLTLSACMMSSEYGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPTVPSMVAVCLADG  172 (434)
T ss_dssp             SCEEEEEECTTSCEEEEEEEETTTEEEEEEEEHHHHHCTTCSSCCCSEEEECCCSGGGSEEEEEECSSCTTEEEEEETTS
T ss_pred             CcccEEEEcCCCCEEEEEEeccCCCceEEEEEccccccCCcCCcceeeeeeccCCCCCceEEEEECCCCCCEEEEEECCC
Confidence            4699999999999999    7889999999999765        21   3455679999999999997688999999999


Q ss_pred             eEEEEeCCCCeeEEEeecccccEEEEEEcCCCCeEEEEeCCCcEEEEecCccceehcccc-------cccceEEEEEeeC
Q 021247          224 HVHMYDAEGKSLVTAMSGHASWVLSVDASPDGAAITTGSSDRTVKLWDLNMRAAMQSMTN-------HTDQVWGVSFRPL  296 (315)
Q Consensus       224 ~i~~wd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~-------~~~~v~~~~~s~~  296 (315)
                      +|++||++.+..+....+|...|.+++|+|+|++|++|+.||+|++||.+ +.....+..       |...+.++.|+++
T Consensus       173 ~v~iwD~~~~~~~~~~~~~~~~v~~v~wspdg~~lasgs~dg~v~iwd~~-~~~~~~~~~~~~~~~~~~~~v~~v~w~~~  251 (434)
T 2oit_A          173 SIAVLQVTETVKVCATLPSTVAVTSVCWSPKGKQLAVGKQNGTVVQYLPT-LQEKKVIPCPPFYESDHPVRVLDVLWIGT  251 (434)
T ss_dssp             CEEEEEESSSEEEEEEECGGGCEEEEEECTTSSCEEEEETTSCEEEECTT-CCEEEEECCCTTCCTTSCEEEEEEEEEET
T ss_pred             eEEEEEcCCCcceeeccCCCCceeEEEEcCCCCEEEEEcCCCcEEEEccC-CcccccccCCcccCCCCceeEEEEEEecC
Confidence            99999999887766677889999999999999999999999999999998 433333322       3348999999998


Q ss_pred             CCEEEE-EeCCCc------EEEeec
Q 021247          297 GGRVVS-VSDDKS------ISLYEY  314 (315)
Q Consensus       297 ~~~l~s-~~~d~~------i~i~~~  314 (315)
                      +.++++ .+.||.      +++|++
T Consensus       252 ~~~l~~~~~~dg~~~~~~~v~i~~l  276 (434)
T 2oit_A          252 YVFAIVYAAADGTLETSPDVVMALL  276 (434)
T ss_dssp             TEEEEEEEETTCCSSSCCEEEEEEC
T ss_pred             ceEEEEEccCCCccCCCCceEEEEe
Confidence            877754 334433      888886

>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}

Probab=99.92  E-value=2.7e-22  Score=169.00  Aligned_cols=252  Identities=15%  Similarity=0.150  Sum_probs=172.6

Q ss_pred             ccccceEEEEEeecCCCCCcEEEEeeC--CCcEEEEcCCCCcc--eeeccccccceEEEEeCCCCCEEEEee-CCCeEEE
Q 021247           12 AHEESVWAVTWVPATETRPALLLTGSL--DETVKLWRPDDMQL--ERTNTGHCLGVVSVAAHPSGIIAASAS-LDSFVRV   86 (315)
Q Consensus        12 ~h~~~v~~v~~~~~~~~~~~~l~sgs~--d~~v~~w~~~~~~~--~~~~~~h~~~v~~~~~~~~g~~l~s~~-~d~~i~~   86 (315)
                      .+...+..++|+|+++    +++++..  ++.|++|+.++.+.  ......+...+..++++|+|++|++++ .++.+++
T Consensus        37 ~~~~~p~~~a~spdg~----l~~~~~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~p~~~a~spdg~~l~~~~~~~~~v~v  112 (347)
T 3hfq_A           37 AATQNPTYLALSAKDC----LYSVDKEDDEGGIAAWQIDGQTAHKLNTVVAPGTPPAYVAVDEARQLVYSANYHKGTAEV  112 (347)
T ss_dssp             EECSCCCCEEECTTCE----EEEEEEETTEEEEEEEEEETTEEEEEEEEEEESCCCSEEEEETTTTEEEEEETTTTEEEE
T ss_pred             eccCCcceEEEccCCe----EEEEEecCCCceEEEEEecCCcEEEeeeeecCCCCCEEEEECCCCCEEEEEeCCCCEEEE
Confidence            4456777889988653    3444332  68999999866543  233344667788999999999888777 7899999


Q ss_pred             EECCCCc---eeEEeeCC---------cccEEEEEECCCCCeEEEEecCCCeEEEEecC-CcceeeeecCCCCCCCCCCc
Q 021247           87 FDVDTNA---SIATLEAS---------PSEVWQMQFDPKGTTLAVAGGGSASVKLWDTA-TWNLIATLSIPRPEGLKPTD  153 (315)
Q Consensus        87 w~~~~~~---~~~~~~~~---------~~~v~~~~~~~~~~~~~~~~~~d~~i~~~d~~-~~~~~~~~~~~~~~~~~~~~  153 (315)
                      |++....   .+..+...         ...+..++|+|+++ ++++...++.|.+||+. +++..........       
T Consensus       113 ~~~~~~g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~spdg~-l~v~~~~~~~v~~~~~~~~g~~~~~~~~~~~-------  184 (347)
T 3hfq_A          113 MKIAADGALTLTDTVQHSGHGPRPEQDGSHIHYTDLTPDNR-LAVIDLGSDKVYVYNVSDAGQLSEQSVLTME-------  184 (347)
T ss_dssp             EEECTTSCEEEEEEEECCCCCSSTTCSSCCEEEEEECTTSC-EEEEETTTTEEEEEEECTTSCEEEEEEEECC-------
T ss_pred             EEeCCCCCeeecceeecCCCCCCccccCCCceEEEECCCCc-EEEEeCCCCEEEEEEECCCCcEEEeeeEEcC-------
Confidence            9996432   22333221         12478899999999 77888888999999998 4433221111111       


Q ss_pred             cCCCCcceEEEEECCCCCEEEE-ecCCCcEEEEEccc--cee--eeeecCCc------cceEEEEEcCCCCcEEEEEeCC
Q 021247          154 KSSSKKFVLSVAWSPDGRRIAC-GSMDGTISVFDVTR--AKF--LHHLEGHF------MPVRSLVYSPVDPRVLFSASDD  222 (315)
Q Consensus       154 ~~~~~~~i~~~~~~~~~~~l~~-~s~dg~i~i~d~~~--~~~--~~~~~~~~------~~v~~~~~~~~~~~~l~s~~~d  222 (315)
                         ....+..++|+|+|+++++ +..++.+.+|++..  ++.  ...+....      ..+..++|+|++..++++...+
T Consensus       185 ---~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~l~v~~~~~  261 (347)
T 3hfq_A          185 ---AGFGPRHLVFSPDGQYAFLAGELSSQIASLKYDTQTGAFTQLGIVKTIPADYTAHNGAAAIRLSHDGHFLYVSNRGY  261 (347)
T ss_dssp             ---TTCCEEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESSCTTCCSCCEEEEEEECTTSCEEEEEEETT
T ss_pred             ---CCCCCceEEECCCCCEEEEEeCCCCEEEEEEecCCCCceEEeeeeeecCCCCCCCCcceeEEECCCCCEEEEEeCCC
Confidence               0113668999999996655 66788999999873  443  22222221      3478899999544455777789


Q ss_pred             CeEEEEeCCC---CeeEEEeecccccEEEEEEcCCCCeEEEEeCC-CcEEEEec--Ccccee
Q 021247          223 THVHMYDAEG---KSLVTAMSGHASWVLSVDASPDGAAITTGSSD-RTVKLWDL--NMRAAM  278 (315)
Q Consensus       223 ~~i~~wd~~~---~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~d-~~i~iwd~--~~~~~~  278 (315)
                      +.|.+|++..   .+.+..+..+...+..++|+|+|++|++++.+ +.|.+|++  .+++..
T Consensus       262 ~~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~d~~tg~l~  323 (347)
T 3hfq_A          262 NTLAVFAVTADGHLTLIQQISTEGDFPRDFDLDPTEAFVVVVNQNTDNATLYARDLTSGKLS  323 (347)
T ss_dssp             TEEEEEEECGGGCEEEEEEEECSSSCCCEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEE
T ss_pred             CEEEEEEECCCCcEEEeEEEecCCCCcCeEEECCCCCEEEEEEcCCCcEEEEEEeCCCCeEE
Confidence            9999999862   24555556666678899999999988887765 89999955  445443

>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A

Probab=99.92  E-value=1.6e-23  Score=188.64  Aligned_cols=232  Identities=10%  Similarity=0.060  Sum_probs=169.9

Q ss_pred             ccceEEEEeCCCCCEEEEeeC-CCeEEEEECCCCceeEEeeCCc-ccEEEEEECCCCCeEEEEecC---CCeEEEEecCC
Q 021247           60 CLGVVSVAAHPSGIIAASASL-DSFVRVFDVDTNASIATLEASP-SEVWQMQFDPKGTTLAVAGGG---SASVKLWDTAT  134 (315)
Q Consensus        60 ~~~v~~~~~~~~g~~l~s~~~-d~~i~~w~~~~~~~~~~~~~~~-~~v~~~~~~~~~~~~~~~~~~---d~~i~~~d~~~  134 (315)
                      ..+|.++.++|||++|+.++. |++++||++.++... .+..+. ..+..+.|+|+ + +++++..   +....+|.+..
T Consensus        21 ~~~~~~~~~~~DG~~la~~s~~~g~~~lw~~~~g~~~-~lt~~~~~~~~~~~~spd-~-~l~~~~~~~g~~~~~l~~~~~   97 (582)
T 3o4h_A           21 AVEKYSLQGVVDGDKLLVVGFSEGSVNAYLYDGGETV-KLNREPINSVLDPHYGVG-R-VILVRDVSKGAEQHALFKVNT   97 (582)
T ss_dssp             HSCEEEEEEEETTTEEEEEEEETTEEEEEEEETTEEE-ECCSSCCSEECEECTTCS-E-EEEEEECSTTSCCEEEEEEET
T ss_pred             ccchheeecCCCCCeEEEEEccCCceeEEEEcCCCcE-eeecccccccccccCCCC-e-EEEEeccCCCCcceEEEEEec
Confidence            558999999999999998877 999999998665544 444444 57899999998 4 5555443   45566665432


Q ss_pred             --cceeeeecCCCCCCCCCCccCCCCcceEEEEECCCCCE-EEEecCCCcEEEEEcccceeeeeecCCccceEEEEEcCC
Q 021247          135 --WNLIATLSIPRPEGLKPTDKSSSKKFVLSVAWSPDGRR-IACGSMDGTISVFDVTRAKFLHHLEGHFMPVRSLVYSPV  211 (315)
Q Consensus       135 --~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~-l~~~s~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~  211 (315)
                        ......+.  .            .......+|+|+++. +++...++.+.+||+.+++.......+.   .++.|+| 
T Consensus        98 ~~~g~~~~l~--~------------~~~~~~~~~s~dg~~~~~~s~~~~~~~l~d~~~g~~~~l~~~~~---~~~~~sp-  159 (582)
T 3o4h_A           98 SRPGEEQRLE--A------------VKPMRILSGVDTGEAVVFTGATEDRVALYALDGGGLRELARLPG---FGFVSDI-  159 (582)
T ss_dssp             TSTTCCEECT--T------------SCSBEEEEEEECSSCEEEEEECSSCEEEEEEETTEEEEEEEESS---CEEEEEE-
T ss_pred             cCCCcccccc--C------------CCCceeeeeCCCCCeEEEEecCCCCceEEEccCCcEEEeecCCC---ceEEECC-
Confidence              11111111  0            011335678888763 3333344455699998887654443332   7889999 


Q ss_pred             CCcEEEEEeCC----CeEEEEeCCCCeeEEEeecccccEEEEEEcCCCCeEEEEeCCC--cEEEEecCccceehcccccc
Q 021247          212 DPRVLFSASDD----THVHMYDAEGKSLVTAMSGHASWVLSVDASPDGAAITTGSSDR--TVKLWDLNMRAAMQSMTNHT  285 (315)
Q Consensus       212 ~~~~l~s~~~d----~~i~~wd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~d~--~i~iwd~~~~~~~~~~~~~~  285 (315)
                      +++++++++.+    ..|++||+.+++.. .+..|...+..++|+|||+.|+++..++  .|++||+..++.. .+..|.
T Consensus       160 DG~~la~~~~~~~~~~~i~~~d~~~g~~~-~l~~~~~~~~~~~~SpDG~~l~~~~~~~~~~i~~~d~~~~~~~-~~~~~~  237 (582)
T 3o4h_A          160 RGDLIAGLGFFGGGRVSLFTSNLSSGGLR-VFDSGEGSFSSASISPGMKVTAGLETAREARLVTVDPRDGSVE-DLELPS  237 (582)
T ss_dssp             ETTEEEEEEEEETTEEEEEEEETTTCCCE-EECCSSCEEEEEEECTTSCEEEEEECSSCEEEEEECTTTCCEE-ECCCSC
T ss_pred             CCCEEEEEEEcCCCCeEEEEEcCCCCCce-EeecCCCccccceECCCCCEEEEccCCCeeEEEEEcCCCCcEE-EccCCC
Confidence            67788877766    78999999887654 5677888899999999999999888899  8999999988776 666777


Q ss_pred             cceEEEE--------EeeCCCEEEEEeCCCcEEEeec
Q 021247          286 DQVWGVS--------FRPLGGRVVSVSDDKSISLYEY  314 (315)
Q Consensus       286 ~~v~~~~--------~s~~~~~l~s~~~d~~i~i~~~  314 (315)
                      ..+.+++        |+|||..+++++.|++++||++
T Consensus       238 ~~~~~~~~~~~~~~~~spdg~~~~~~~~~g~~~l~~~  274 (582)
T 3o4h_A          238 KDFSSYRPTAITWLGYLPDGRLAVVARREGRSAVFID  274 (582)
T ss_dssp             SHHHHHCCSEEEEEEECTTSCEEEEEEETTEEEEEET
T ss_pred             cChhhhhhccccceeEcCCCcEEEEEEcCCcEEEEEE
Confidence            6666677        9999988899999999999975

>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*

Probab=99.91  E-value=9.9e-23  Score=170.46  Aligned_cols=244  Identities=15%  Similarity=0.111  Sum_probs=181.9

Q ss_pred             ceEEEEEeecCCCCCcEEEEeeCCCcEEEEcCCCCcceeeccc-----cccceEEEEeCCCCCEEEEee-----------
Q 021247           16 SVWAVTWVPATETRPALLLTGSLDETVKLWRPDDMQLERTNTG-----HCLGVVSVAAHPSGIIAASAS-----------   79 (315)
Q Consensus        16 ~v~~v~~~~~~~~~~~~l~sgs~d~~v~~w~~~~~~~~~~~~~-----h~~~v~~~~~~~~g~~l~s~~-----------   79 (315)
                      .+.+++|+|+++   .++++++.++.|.+||..+.+....+..     |...+..+.++|+|.+++++.           
T Consensus        35 ~~~~~~~s~dg~---~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~  111 (337)
T 1pby_B           35 TPMVPMVAPGGR---IAYATVNKSESLVKIDLVTGETLGRIDLSTPEERVKSLFGAALSPDGKTLAIYESPVRLELTHFE  111 (337)
T ss_dssp             CCCCEEECTTSS---EEEEEETTTTEEEEEETTTCCEEEEEECCBTTEEEECTTCEEECTTSSEEEEEEEEEEECSSCEE
T ss_pred             CccceEEcCCCC---EEEEEeCCCCeEEEEECCCCCeEeeEEcCCcccccccccceEECCCCCEEEEEeccccccccccc
Confidence            478899999764   2566777789999999988776654432     233577899999998888775           


Q ss_pred             -CCCeEEEEECCCCceeEEeeCCcccEEEEEECCCCCeEEEEecCCCeEEEEecCCcceeeeecCCCCCCCCCCccCCCC
Q 021247           80 -LDSFVRVFDVDTNASIATLEASPSEVWQMQFDPKGTTLAVAGGGSASVKLWDTATWNLIATLSIPRPEGLKPTDKSSSK  158 (315)
Q Consensus        80 -~d~~i~~w~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~  158 (315)
                       .++.|++||+.+++.+..+.. ...+..++|+|+++.++++   ++.|.+||+.+++....+......           
T Consensus       112 ~~~~~i~v~d~~~~~~~~~~~~-~~~~~~~~~s~dg~~l~~~---~~~i~~~d~~~~~~~~~~~~~~~~-----------  176 (337)
T 1pby_B          112 VQPTRVALYDAETLSRRKAFEA-PRQITMLAWARDGSKLYGL---GRDLHVMDPEAGTLVEDKPIQSWE-----------  176 (337)
T ss_dssp             ECCCEEEEEETTTTEEEEEEEC-CSSCCCEEECTTSSCEEEE---SSSEEEEETTTTEEEEEECSTTTT-----------
T ss_pred             ccCceEEEEECCCCcEEEEEeC-CCCcceeEECCCCCEEEEe---CCeEEEEECCCCcEeeeeeccccC-----------
Confidence             579999999998887777664 3456788999999977665   588999999988877665432210           


Q ss_pred             cceEEEEECCCCCEEEEecC-CC-----------------------cEEEEEcccceee-eeecCCccceEEEEEcCCCC
Q 021247          159 KFVLSVAWSPDGRRIACGSM-DG-----------------------TISVFDVTRAKFL-HHLEGHFMPVRSLVYSPVDP  213 (315)
Q Consensus       159 ~~i~~~~~~~~~~~l~~~s~-dg-----------------------~i~i~d~~~~~~~-~~~~~~~~~v~~~~~~~~~~  213 (315)
                      .   .+.|+|+++.++.... ++                       .|.+||+.+++.. ..+..+...+..+.|+| ++
T Consensus       177 ~---~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~s~-dg  252 (337)
T 1pby_B          177 A---ETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMREVRIMDVFYFSTAVNP-AK  252 (337)
T ss_dssp             T---TTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECT-TS
T ss_pred             C---CceeCCCccEEeeeccCCCceeeeeeccccccccccccccccceEEEeCCCCCceEeecCCCCCceeeEEECC-CC
Confidence            0   1256788776654432 22                       4689999887764 22334556778899999 55


Q ss_pred             cEEEEEeCCCeEEEEeCCCCeeEEEeecccccEEEEEEcCCCCeEEEEeCCCcEEEEecCccceehccccc
Q 021247          214 RVLFSASDDTHVHMYDAEGKSLVTAMSGHASWVLSVDASPDGAAITTGSSDRTVKLWDLNMRAAMQSMTNH  284 (315)
Q Consensus       214 ~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~  284 (315)
                      ++++++  ++.|.+||.++++.+..+..+ ..+.+++|+|++++|++++.++.|++||+.+++.+..+..+
T Consensus       253 ~~l~~~--~~~v~~~d~~~~~~~~~~~~~-~~~~~~~~s~dg~~l~~~~~~~~i~v~d~~~~~~~~~~~~~  320 (337)
T 1pby_B          253 TRAFGA--YNVLESFDLEKNASIKRVPLP-HSYYSVNVSTDGSTVWLGGALGDLAAYDAETLEKKGQVDLP  320 (337)
T ss_dssp             SEEEEE--ESEEEEEETTTTEEEEEEECS-SCCCEEEECTTSCEEEEESBSSEEEEEETTTCCEEEEEECG
T ss_pred             CEEEEe--CCeEEEEECCCCcCcceecCC-CceeeEEECCCCCEEEEEcCCCcEEEEECcCCcEEEEEEcC
Confidence            666666  789999999988877766543 45788999999999998999999999999988877766544

>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}

Probab=99.91  E-value=3.4e-22  Score=170.85  Aligned_cols=284  Identities=12%  Similarity=0.058  Sum_probs=190.5

Q ss_pred             hccccceEE-----EEEeecCCCCCcEEEEeeC-CCc--EEEEcCCCCcceeeccccccceEEEEeCCCCCEEEEeeCCC
Q 021247           11 NAHEESVWA-----VTWVPATETRPALLLTGSL-DET--VKLWRPDDMQLERTNTGHCLGVVSVAAHPSGIIAASASLDS   82 (315)
Q Consensus        11 ~~h~~~v~~-----v~~~~~~~~~~~~l~sgs~-d~~--v~~w~~~~~~~~~~~~~h~~~v~~~~~~~~g~~l~s~~~d~   82 (315)
                      ..|...+..     .+|+|++.    .|+.++. ++.  |.+|+.++.+......++...+....|+|+|+.|+.++.++
T Consensus        27 t~~~~~~~~~~~~~~~~SpDg~----~l~~~~~~~g~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~spdg~~l~~~~~~~  102 (388)
T 3pe7_A           27 TPPDVTCHRNYFYQKCFTRDGS----KLLFGGAFDGPWNYYLLDLNTQVATQLTEGRGDNTFGGFLSPDDDALFYVKDGR  102 (388)
T ss_dssp             SCTTSCEECCCTTSCCBCTTSC----EEEEEECTTSSCEEEEEETTTCEEEECCCSSCBCSSSCEECTTSSEEEEEETTT
T ss_pred             cCCcccccchhhcCccCCCCCC----EEEEEEcCCCCceEEEEeCCCCceEEeeeCCCCCccceEEcCCCCEEEEEeCCC
Confidence            345555555     78999876    4666665 674  78888888777666666666666778999999999999999


Q ss_pred             eEEEEECCCCceeEEeeCCcccEEEE--EECCCCCeEEEE---------------------ecCCCeEEEEecCCcceee
Q 021247           83 FVRVFDVDTNASIATLEASPSEVWQM--QFDPKGTTLAVA---------------------GGGSASVKLWDTATWNLIA  139 (315)
Q Consensus        83 ~i~~w~~~~~~~~~~~~~~~~~v~~~--~~~~~~~~~~~~---------------------~~~d~~i~~~d~~~~~~~~  139 (315)
                      .|++||+.+++.......+...+...  .++|++..++..                     ...+..|.+||+.+++...
T Consensus       103 ~l~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g~~~~  182 (388)
T 3pe7_A          103 NLMRVDLATLEENVVYQVPAEWVGYGTWVANSDCTKLVGIEIRREDWVPLTDWKKFHEFYFTKPCCRLMRVDLKTGESTV  182 (388)
T ss_dssp             EEEEEETTTCCEEEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHGGGCCCEEEEEEETTTCCEEE
T ss_pred             eEEEEECCCCcceeeeechhhcccccceeECCCCCeeccccccCcccccccccchhhhhhccCCcceEEEEECCCCceEE
Confidence            99999999988766665555444333  348888866432                     2234689999998775443


Q ss_pred             eecCCCCCCCCCCccCCCCcceEEEEECC-CCCEEEEecCC------CcEEEEEcccceeeeeecCCc--cceEEEEEcC
Q 021247          140 TLSIPRPEGLKPTDKSSSKKFVLSVAWSP-DGRRIACGSMD------GTISVFDVTRAKFLHHLEGHF--MPVRSLVYSP  210 (315)
Q Consensus       140 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~s~d------g~i~i~d~~~~~~~~~~~~~~--~~v~~~~~~~  210 (315)
                      ...              +...+..++|+| +|+.|+..+.+      ..|.++|+..+... .+..+.  ..+....|+|
T Consensus       183 l~~--------------~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~-~l~~~~~~~~~~~~~~sp  247 (388)
T 3pe7_A          183 ILQ--------------ENQWLGHPIYRPYDDSTVAFCHEGPHDLVDARMWLINEDGTNMR-KVKTHAEGESCTHEFWVP  247 (388)
T ss_dssp             EEE--------------ESSCEEEEEEETTEEEEEEEEECSCTTTSSCSEEEEETTSCCCE-ESCCCCTTEEEEEEEECT
T ss_pred             eec--------------CCccccccEECCCCCCEEEEEEecCCCCCcceEEEEeCCCCceE-EeeeCCCCcccccceECC
Confidence            321              122478899999 99988776543      37888887655433 333333  3577889999


Q ss_pred             CCCcEEEEEeCCC----eEEEEeCCCCeeEE--Eeeccccc---EEEEEEcCCCCeEEEE---------eCCCcEEEEec
Q 021247          211 VDPRVLFSASDDT----HVHMYDAEGKSLVT--AMSGHASW---VLSVDASPDGAAITTG---------SSDRTVKLWDL  272 (315)
Q Consensus       211 ~~~~~l~s~~~d~----~i~~wd~~~~~~~~--~~~~~~~~---i~~~~~~~~~~~l~s~---------~~d~~i~iwd~  272 (315)
                      ++..+++.+..++    .|++||+.+++...  ...++...   ...+.|+|+|+.|+..         ..+..|++||+
T Consensus       248 dg~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~i~~~d~  327 (388)
T 3pe7_A          248 DGSALVYVSYLKGSPDRFIYSADPETLENRQLTSMPACSHLMSNYDGSLMVGDGSDAPVDVQDDSGYKIENDPFLYVFNM  327 (388)
T ss_dssp             TSSCEEEEEEETTCCCEEEEEECTTTCCEEEEEEECCEEEEEECTTSSEEEEEECCC------------CCCCEEEEEET
T ss_pred             CCCEEEEEecCCCCCcceEEEEecCCCceEEEEcCCCceeeeecCCCCeEccCCCcceeEeeeccccccCCCCEEEEEec
Confidence            5554544444322    49999998876432  22221111   1123689999877643         55678999999


Q ss_pred             Cccceehccccccc-----------ceEEEEEeeCCCEEEEEe-CCCcEEEeec
Q 021247          273 NMRAAMQSMTNHTD-----------QVWGVSFRPLGGRVVSVS-DDKSISLYEY  314 (315)
Q Consensus       273 ~~~~~~~~~~~~~~-----------~v~~~~~s~~~~~l~s~~-~d~~i~i~~~  314 (315)
                      ..++. ..+..+..           .+.+++|+|||++|+..+ .++...||.+
T Consensus       328 ~~~~~-~~l~~~~~~~~~~~~~~~~~~~~~~~spDg~~l~~~s~~~g~~~l~~~  380 (388)
T 3pe7_A          328 KNGTQ-HRVARHDTSWKVFEGDRQVTHPHPSFTPDDKQILFTSDVHGKPALYLA  380 (388)
T ss_dssp             TTTEE-EEEEECCCCCCCBTTBSSTTCCCCEECTTSSEEEEEECTTSSCEEEEE
T ss_pred             cCCce-EEeccccCcccccccccccCCCCccCCCCCCEEEEEecCCCceeEEEE
Confidence            87654 33444444           477889999999887665 4788888865

>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A

Probab=99.91  E-value=2.2e-22  Score=174.33  Aligned_cols=216  Identities=15%  Similarity=0.156  Sum_probs=159.6

Q ss_pred             CcEEEEcCCCCcceeeccccccceEEEEeCCCCCEEEEeeCCCeEEEEECCCC----------ceeEE-----eeCCccc
Q 021247           40 ETVKLWRPDDMQLERTNTGHCLGVVSVAAHPSGIIAASASLDSFVRVFDVDTN----------ASIAT-----LEASPSE  104 (315)
Q Consensus        40 ~~v~~w~~~~~~~~~~~~~h~~~v~~~~~~~~g~~l~s~~~d~~i~~w~~~~~----------~~~~~-----~~~~~~~  104 (315)
                      +.+++|+... .    .  +...++.+++++++.++++++.|+ +++|+....          ..+..     ...+...
T Consensus        23 ~~vri~~~~~-~----~--~~~~~n~lavs~~~~~l~~~~~dg-v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   94 (434)
T 2oit_A           23 KKVRIFDSPE-E----L--PKERSSLLAVSNKYGLVFAGGASG-LQIFPTKNLLIQNKPGDDPNKIVDKVQGLLVPMKFP   94 (434)
T ss_dssp             CEEECSCCCS-S----C--CCSCCBCEEEETTTTEEEEEETTE-EEEEEHHHHCCCCCTTCCTTCEEECCCCEEECCSSC
T ss_pred             eeEEecCCcc-c----c--CCCCccEEEEecCCCEEEEECCCE-EEEEEchHhhhhcccccCcccccccCccccccCCCc
Confidence            5688886421 1    1  233578889999999999999888 999875321          01111     1123567


Q ss_pred             EEEEEECCCCCeEEE---EecCCCeEEEEecCCc--------ceeeeecCCCCCCCCCCccCCCCcceEEEEECCC-CCE
Q 021247          105 VWQMQFDPKGTTLAV---AGGGSASVKLWDTATW--------NLIATLSIPRPEGLKPTDKSSSKKFVLSVAWSPD-GRR  172 (315)
Q Consensus       105 v~~~~~~~~~~~~~~---~~~~d~~i~~~d~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-~~~  172 (315)
                      |.+++|+|+++.+++   +++.|++|++||+++.        +.+..+.          ....|...|.+++|+|+ +++
T Consensus        95 v~~l~~spdg~~lav~~~sgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~----------~~~~h~~~V~~v~~~p~~~~~  164 (434)
T 2oit_A           95 IHHLALSCDNLTLSACMMSSEYGSIIAFFDVRTFSNEAKQQKRPFAYHK----------LLKDAGGMVIDMKWNPTVPSM  164 (434)
T ss_dssp             EEEEEECTTSCEEEEEEEETTTEEEEEEEEHHHHHCTTCSSCCCSEEEE----------CCCSGGGSEEEEEECSSCTTE
T ss_pred             ccEEEEcCCCCEEEEEEeccCCCceEEEEEccccccCCcCCcceeeeee----------ccCCCCCceEEEEECCCCCCE
Confidence            999999999998776   7888999999998764        1111111          11235677999999997 789


Q ss_pred             EEEecCCCcEEEEEcccceeeeeecCCccceEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCeeEEEeecc-------ccc
Q 021247          173 IACGSMDGTISVFDVTRAKFLHHLEGHFMPVRSLVYSPVDPRVLFSASDDTHVHMYDAEGKSLVTAMSGH-------ASW  245 (315)
Q Consensus       173 l~~~s~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~-------~~~  245 (315)
                      |++++.||.|++||++++.......+|...|.+++|+| ++++|++|+.|+.|++||.+ ++....+..|       ...
T Consensus       165 las~s~Dg~v~iwD~~~~~~~~~~~~~~~~v~~v~wsp-dg~~lasgs~dg~v~iwd~~-~~~~~~~~~~~~~~~~~~~~  242 (434)
T 2oit_A          165 VAVCLADGSIAVLQVTETVKVCATLPSTVAVTSVCWSP-KGKQLAVGKQNGTVVQYLPT-LQEKKVIPCPPFYESDHPVR  242 (434)
T ss_dssp             EEEEETTSCEEEEEESSSEEEEEEECGGGCEEEEEECT-TSSCEEEEETTSCEEEECTT-CCEEEEECCCTTCCTTSCEE
T ss_pred             EEEEECCCeEEEEEcCCCcceeeccCCCCceeEEEEcC-CCCEEEEEcCCCcEEEEccC-CcccccccCCcccCCCCcee
Confidence            99999999999999998877666777889999999999 57899999999999999998 4444444332       347


Q ss_pred             EEEEEEcCCCCeEEE-EeCCC------cEEEEecCcc
Q 021247          246 VLSVDASPDGAAITT-GSSDR------TVKLWDLNMR  275 (315)
Q Consensus       246 i~~~~~~~~~~~l~s-~~~d~------~i~iwd~~~~  275 (315)
                      +.++.|++++.++++ ...||      .+++|++...
T Consensus       243 v~~v~w~~~~~~l~~~~~~dg~~~~~~~v~i~~l~~~  279 (434)
T 2oit_A          243 VLDVLWIGTYVFAIVYAAADGTLETSPDVVMALLPKK  279 (434)
T ss_dssp             EEEEEEEETTEEEEEEEETTCCSSSCCEEEEEECCCT
T ss_pred             EEEEEEecCceEEEEEccCCCccCCCCceEEEEeccC
Confidence            999999998877644 33443      3899999764

>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1

Probab=99.91  E-value=1.6e-21  Score=165.45  Aligned_cols=272  Identities=8%  Similarity=0.050  Sum_probs=179.5

Q ss_pred             EEEEeeCC--CcEEEEcC--CCCcceeecc---ccccceEEEEeCCCCCEEEEeeCCCeEEEEECC-CCceeEEeeCC-c
Q 021247           32 LLLTGSLD--ETVKLWRP--DDMQLERTNT---GHCLGVVSVAAHPSGIIAASASLDSFVRVFDVD-TNASIATLEAS-P  102 (315)
Q Consensus        32 ~l~sgs~d--~~v~~w~~--~~~~~~~~~~---~h~~~v~~~~~~~~g~~l~s~~~d~~i~~w~~~-~~~~~~~~~~~-~  102 (315)
                      .++.|+..  +.|.+|+.  +++++.....   +....+..++++|+|+++++++.+ .|.+|++. +++........ .
T Consensus         4 ~~~vg~~~~~~~i~~~~~d~~~g~l~~~~~~~~~~~~~~~~~a~spdg~~l~~~~~~-~v~~~~~~~~g~~~~~~~~~~~   82 (365)
T 1jof_A            4 HLMIGTWTPPGAIFTVQFDDEKLTCKLIKRTEIPQDEPISWMTFDHERKNIYGAAMK-KWSSFAVKSPTEIVHEASHPIG   82 (365)
T ss_dssp             EEEEEESSSSCEEEEEEEETTTTEEEEEEEEECCTTCCCSEEEECTTSSEEEEEEBT-EEEEEEEEETTEEEEEEEEECC
T ss_pred             EEEEEEccCCCcEEEEEEECCCCCEEEeeEEccCCCCCCcEEEECCCCCEEEEEccc-eEEEEEECCCCCEEEeeEeecC
Confidence            46677764  56877764  4444432211   233467789999999999988888 99999997 66554332211 1


Q ss_pred             ccEEEEEECCCCCe-EEEEec-------------CCCeEEEEecCC-cceeeeecCCCCCCCCCCccCCCCcceEEEEEC
Q 021247          103 SEVWQMQFDPKGTT-LAVAGG-------------GSASVKLWDTAT-WNLIATLSIPRPEGLKPTDKSSSKKFVLSVAWS  167 (315)
Q Consensus       103 ~~v~~~~~~~~~~~-~~~~~~-------------~d~~i~~~d~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~  167 (315)
                      +....++++|+++. +++++.             .++++.+|++.. ++....+....         ..+...+.+++|+
T Consensus        83 g~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~g~v~v~~~~~~g~~~~~~~~~~---------~~~~~~~~~~~~s  153 (365)
T 1jof_A           83 GHPRANDADTNTRAIFLLAAKQPPYAVYANPFYKFAGYGNVFSVSETGKLEKNVQNYE---------YQENTGIHGMVFD  153 (365)
T ss_dssp             SSGGGGCTTSCCEEEEEEECSSTTCCEEEEEESSSCCEEEEEEECTTCCEEEEEEEEE---------CCTTCCEEEEEEC
T ss_pred             CCCccEEECCCCCEEEEEEecCCcceeccceeecCCceEEEEccCCCCcCcceEeeEE---------eCCCCcceEEEEC
Confidence            22445789999985 334443             688999999873 44433322100         0122347899999


Q ss_pred             CCCCEEEEec-CCCcEEEEEcc-cceee--eeec--CCccceEEEEEcCCCCcEEEEEe-CCCeEEEEeCC--CCeeE--
Q 021247          168 PDGRRIACGS-MDGTISVFDVT-RAKFL--HHLE--GHFMPVRSLVYSPVDPRVLFSAS-DDTHVHMYDAE--GKSLV--  236 (315)
Q Consensus       168 ~~~~~l~~~s-~dg~i~i~d~~-~~~~~--~~~~--~~~~~v~~~~~~~~~~~~l~s~~-~d~~i~~wd~~--~~~~~--  236 (315)
                      |+|++++++. .++.|++||+. +++..  ..+.  .|...++.++|+| +++++++++ .++.|.+|+..  ++++.  
T Consensus       154 pdG~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~~g~~p~~~~~sp-dg~~l~v~~~~~~~v~v~~~~~~~g~~~~~  232 (365)
T 1jof_A          154 PTETYLYSADLTANKLWTHRKLASGEVELVGSVDAPDPGDHPRWVAMHP-TGNYLYALMEAGNRICEYVIDPATHMPVYT  232 (365)
T ss_dssp             TTSSEEEEEETTTTEEEEEEECTTSCEEEEEEEECSSTTCCEEEEEECT-TSSEEEEEETTTTEEEEEEECTTTCCEEEE
T ss_pred             CCCCEEEEEcCCCCEEEEEEECCCCCEEEeeeEecCCCCCCCCEeEECC-CCCEEEEEECCCCeEEEEEEeCCCCcEEEc
Confidence            9999887654 46799999997 66542  2333  2345689999999 455555554 57899998754  44432  


Q ss_pred             -EEee-------cccc------cEEEEE-EcCCCCeEEEEeCCC------cEEEEecC-ccceeh---cccccccceEEE
Q 021247          237 -TAMS-------GHAS------WVLSVD-ASPDGAAITTGSSDR------TVKLWDLN-MRAAMQ---SMTNHTDQVWGV  291 (315)
Q Consensus       237 -~~~~-------~~~~------~i~~~~-~~~~~~~l~s~~~d~------~i~iwd~~-~~~~~~---~~~~~~~~v~~~  291 (315)
                       ..+.       +|..      .+..++ |+|+|++|+++..+.      +|.+|+++ .++...   ....+...+..+
T Consensus       233 ~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~spdG~~l~v~~~~~~~~~~~~i~v~~~~~~g~~~~~~~~~~~~~~~~~~~  312 (365)
T 1jof_A          233 HHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFASSRANKFELQGYIAGFKLRDCGSIEKQLFLSPTPTSGGHSN  312 (365)
T ss_dssp             EEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEESSTTSCCEEEEEEECTTSCEEEEEEEEECSSCCTTCC
T ss_pred             cceEEcCCCCcCCcccccccccccccEEEECCCCCEEEEECCCCCCCCCCeEEEEEECCCCCEEEeeeeeecCCCCcccc
Confidence             1121       1222      588999 999999887765432      89999996 454332   123344456788


Q ss_pred             EEee---CCCEEEEEeCC-CcEEEeec
Q 021247          292 SFRP---LGGRVVSVSDD-KSISLYEY  314 (315)
Q Consensus       292 ~~s~---~~~~l~s~~~d-~~i~i~~~  314 (315)
                      +|+|   +|++|++++.+ ++|+||++
T Consensus       313 a~sp~~~dg~~l~v~~~~~~~v~v~~~  339 (365)
T 1jof_A          313 AVSPCPWSDEWMAITDDQEGWLEIYRW  339 (365)
T ss_dssp             CEEECTTCTTEEEEECSSSCEEEEEEE
T ss_pred             eecCCCcCCCEEEEEEcCCCeEEEEEE
Confidence            9999   89999988865 99999986

>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A

Probab=99.90  E-value=9.7e-21  Score=160.36  Aligned_cols=262  Identities=11%  Similarity=0.124  Sum_probs=175.6

Q ss_pred             cccceEEEEEeecCCCCCcEEEEeeCC----CcEEEEcCCC--Cccee--eccccccceEEEEeCCCCCEEEEee-CCCe
Q 021247           13 HEESVWAVTWVPATETRPALLLTGSLD----ETVKLWRPDD--MQLER--TNTGHCLGVVSVAAHPSGIIAASAS-LDSF   83 (315)
Q Consensus        13 h~~~v~~v~~~~~~~~~~~~l~sgs~d----~~v~~w~~~~--~~~~~--~~~~h~~~v~~~~~~~~g~~l~s~~-~d~~   83 (315)
                      |...+..++|+|+++    +|++++.+    +.|.+|+.+.  +++..  ....+...+..+++  +|.++++++ .++.
T Consensus        48 ~~~~p~~l~~spdg~----~l~~~~~~~~~~~~v~~~~~~~~~g~~~~~~~~~~~~~~p~~~~~--dg~~l~~~~~~~~~  121 (361)
T 3scy_A           48 EVANPSYLIPSADGK----FVYSVNEFSKDQAAVSAFAFDKEKGTLHLLNTQKTMGADPCYLTT--NGKNIVTANYSGGS  121 (361)
T ss_dssp             ECSCCCSEEECTTSS----EEEEEECCSSTTCEEEEEEEETTTTEEEEEEEEECSSSCEEEEEE--CSSEEEEEETTTTE
T ss_pred             cCCCCceEEECCCCC----EEEEEEccCCCCCcEEEEEEeCCCCcEEEeeEeccCCCCcEEEEE--CCCEEEEEECCCCE
Confidence            566777889998765    68888875    7999998754  33322  22334456677777  777666555 6889


Q ss_pred             EEEEECCCCceeE----EeeC----------CcccEEEEEECCCCCeEEEEecCCCeEEEEecCCcce------e-----
Q 021247           84 VRVFDVDTNASIA----TLEA----------SPSEVWQMQFDPKGTTLAVAGGGSASVKLWDTATWNL------I-----  138 (315)
Q Consensus        84 i~~w~~~~~~~~~----~~~~----------~~~~v~~~~~~~~~~~~~~~~~~d~~i~~~d~~~~~~------~-----  138 (315)
                      +.+|++.....+.    ....          ....+..++|+|+++.+++++..++.|.+|++.....      +     
T Consensus       122 v~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~v~v~~~~~~~~~~~~~~l~~~~~  201 (361)
T 3scy_A          122 ITVFPIGQDGALLPASDVIEFKGSGPDKERQTMPHLHCVRITPDGKYLLADDLGTDQIHKFNINPNANADNKEKFLTKGT  201 (361)
T ss_dssp             EEEEEBCTTSCBCSCSEEEECCCCCSCTTTCSSCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTCCTTTCCCCEEEEE
T ss_pred             EEEEEeCCCCcCcccceeEEccCCCCCccccCCCcceEEEECCCCCEEEEEeCCCCEEEEEEEcCCCCcccccceeeccc
Confidence            9999997543321    1111          1223578999999998888888889999998875331      1     


Q ss_pred             -eeecCCCCCCCCCCccCCCCcceEEEEECCCCCEEEEec-CCCcEEEEEccccee--eeee---cCCccceEEEEEcCC
Q 021247          139 -ATLSIPRPEGLKPTDKSSSKKFVLSVAWSPDGRRIACGS-MDGTISVFDVTRAKF--LHHL---EGHFMPVRSLVYSPV  211 (315)
Q Consensus       139 -~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~s-~dg~i~i~d~~~~~~--~~~~---~~~~~~v~~~~~~~~  211 (315)
                       .....+            ....+..++|+|+|++++++. .++.|.+||+.+++.  +..+   ..+......++|+|+
T Consensus       202 ~~~~~~~------------~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~~~g~~~~~~~~~~~~~~~~~~~~i~~spd  269 (361)
T 3scy_A          202 PEAFKVA------------PGSGPRHLIFNSDGKFAYLINEIGGTVIAFRYADGMLDEIQTVAADTVNAQGSGDIHLSPD  269 (361)
T ss_dssp             EEEEECC------------TTCCEEEEEECTTSSEEEEEETTTCEEEEEEEETTEEEEEEEEESCSSCCCCEEEEEECTT
T ss_pred             ccceecC------------CCCCCeEEEEcCCCCEEEEEcCCCCeEEEEEecCCceEEeEEEecCCCCCCCcccEEECCC
Confidence             111111            122367899999999886665 689999999986654  2222   223345689999994


Q ss_pred             CCcEEE-EEeC-CCeEEEEeCC--CCe--eEEEeecccccEEEEEEcCCCCeEEEEe-CCCcEEEEec--Cccceehcc-
Q 021247          212 DPRVLF-SASD-DTHVHMYDAE--GKS--LVTAMSGHASWVLSVDASPDGAAITTGS-SDRTVKLWDL--NMRAAMQSM-  281 (315)
Q Consensus       212 ~~~~l~-s~~~-d~~i~~wd~~--~~~--~~~~~~~~~~~i~~~~~~~~~~~l~s~~-~d~~i~iwd~--~~~~~~~~~-  281 (315)
                       +++|+ +... ++.|.+|++.  +++  .+..+.. ...+..++|+|+|++|++++ .++.|.+|++  .+++..... 
T Consensus       270 -g~~l~v~~~~~~~~i~v~~~~~~~g~~~~~~~~~~-g~~~~~~~~spdg~~l~~~~~~~~~v~v~~~d~~~g~~~~~~~  347 (361)
T 3scy_A          270 -GKYLYASNRLKADGVAIFKVDETNGTLTKVGYQLT-GIHPRNFIITPNGKYLLVACRDTNVIQIFERDQATGLLTDIKK  347 (361)
T ss_dssp             -SSEEEEEECSSSCEEEEEEECTTTCCEEEEEEEEC-SSCCCEEEECTTSCEEEEEETTTTEEEEEEECTTTCCEEECSC
T ss_pred             -CCEEEEECCCCCCEEEEEEEcCCCCcEEEeeEecC-CCCCceEEECCCCCEEEEEECCCCCEEEEEEECCCCcEeecce
Confidence             55554 4445 6899999985  333  3333443 45678999999999888877 6789999755  455544332 


Q ss_pred             cccccceEEEEEe
Q 021247          282 TNHTDQVWGVSFR  294 (315)
Q Consensus       282 ~~~~~~v~~~~~s  294 (315)
                      ..+...+.++.|.
T Consensus       348 ~~~~~~p~~v~~~  360 (361)
T 3scy_A          348 DIKVDKPVCLKFV  360 (361)
T ss_dssp             CEECSSEEEEEEE
T ss_pred             eeeCCCCeEEEEc
Confidence            2344578888886

>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*

Probab=99.88  E-value=1.5e-19  Score=151.15  Aligned_cols=249  Identities=14%  Similarity=0.138  Sum_probs=184.9

Q ss_pred             ccceEEEEeCCCCCEEEEeeCC------------------------CeEEEEECCCCceeEEee-CCcccEEEEEECCCC
Q 021247           60 CLGVVSVAAHPSGIIAASASLD------------------------SFVRVFDVDTNASIATLE-ASPSEVWQMQFDPKG  114 (315)
Q Consensus        60 ~~~v~~~~~~~~g~~l~s~~~d------------------------~~i~~w~~~~~~~~~~~~-~~~~~v~~~~~~~~~  114 (315)
                      -..+..++++|+|+++++...+                        +.|.+||..+++.+..+. ........++++|++
T Consensus        23 l~~v~~va~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~p~gia~d~~g  102 (329)
T 3fvz_A           23 PGQVSGVALDSKNNLVIFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPNNAEILQSSGKNLFYLPHGLSIDTDG  102 (329)
T ss_dssp             CSCEEEEEECTTCCEEEEECTTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECTTTCCEEEEECTTTCSSEEEEEECTTS
T ss_pred             cCCceEEEECCCCCEEEEeCCCCeEEeeccCcceeecccccccccCCcEEEEECCCCeEEeccCCCccCCceEEEECCCC
Confidence            3568999999999999988777                        479999998888766554 233568899999998


Q ss_pred             CeEEEEecCCCeEEEEecCCcc-eeeeecCCCCCCCCCCccCCCCcceEEEEECC-CCCEEEEec-CCCcEEEEEcccce
Q 021247          115 TTLAVAGGGSASVKLWDTATWN-LIATLSIPRPEGLKPTDKSSSKKFVLSVAWSP-DGRRIACGS-MDGTISVFDVTRAK  191 (315)
Q Consensus       115 ~~~~~~~~~d~~i~~~d~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~s-~dg~i~i~d~~~~~  191 (315)
                      + ++++...++.|++||..... .+..+......+.    ...+......++++| +++.+++.+ .++.|++||. .++
T Consensus       103 ~-l~v~d~~~~~v~~~~~~g~~~~~~~~~~~~~~g~----~~~~~~~P~~ia~~~~~g~lyv~d~~~~~~I~~~~~-~g~  176 (329)
T 3fvz_A          103 N-YWVTDVALHQVFKLDPHSKEGPLLILGRSMQPGS----DQNHFCQPTDVAVEPSTGAVFVSDGYCNSRIVQFSP-SGK  176 (329)
T ss_dssp             C-EEEEETTTTEEEEECTTCSSCCSEEESBTTBCCC----STTCCSSEEEEEECTTTCCEEEEECSSCCEEEEECT-TSC
T ss_pred             C-EEEEECCCCEEEEEeCCCCeEEEEEecccCCCCC----CccccCCCcEEEEeCCCCeEEEEeCCCCCeEEEEcC-CCC
Confidence            8 66777888999999986432 3333321111110    012233478999999 788888886 6899999994 566


Q ss_pred             eeeeec----------CCccceEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCeeEEEee--cccccEEEEEEcC------
Q 021247          192 FLHHLE----------GHFMPVRSLVYSPVDPRVLFSASDDTHVHMYDAEGKSLVTAMS--GHASWVLSVDASP------  253 (315)
Q Consensus       192 ~~~~~~----------~~~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~--~~~~~i~~~~~~~------  253 (315)
                      .+..+.          ++......++++|.++.++++...++.|++||..+++.+..+.  .+...+.+++++|      
T Consensus       177 ~~~~~~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~~~~~I~~~~~~~G~~~~~~~~~~~~~~~~~~~~~pg~~~~~  256 (329)
T 3fvz_A          177 FVTQWGEESSGSSPRPGQFSVPHSLALVPHLDQLCVADRENGRIQCFKTDTKEFVREIKHASFGRNVFAISYIPGFLFAV  256 (329)
T ss_dssp             EEEEECEECCSSSCCTTEESCEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEEEEECCTTTTTCEEEEEEETTEEEEE
T ss_pred             EEEEeccCCCCCCCCCcccCCCcEEEEECCCCEEEEEECCCCEEEEEECCCCcEEEEEeccccCCCcceeeecCCEEEEe
Confidence            555543          2233478999998658888898899999999998777777663  4556788999999      


Q ss_pred             CCCeEEEEeCCCcEEEEecCccceehcc---cccccceEEEEEeeCCCEEEEEeCCCcEEEeec
Q 021247          254 DGAAITTGSSDRTVKLWDLNMRAAMQSM---TNHTDQVWGVSFRPLGGRVVSVSDDKSISLYEY  314 (315)
Q Consensus       254 ~~~~l~s~~~d~~i~iwd~~~~~~~~~~---~~~~~~v~~~~~s~~~~~l~s~~~d~~i~i~~~  314 (315)
                      +++..++...+.+|++|+..+++.+..+   ..+...+.+++++|+|..+++...+++|++|+.
T Consensus       257 ~g~~~v~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~~p~~ia~~~dG~lyvad~~~~~I~~~~~  320 (329)
T 3fvz_A          257 NGKPYFGDQEPVQGFVMNFSSGEIIDVFKPVRKHFDMPHDIVASEDGTVYIGDAHTNTVWKFTL  320 (329)
T ss_dssp             ECCCCTTCSCCCCEEEEETTTCCEEEEECCSSSCCSSEEEEEECTTSEEEEEESSSCCEEEEEE
T ss_pred             CCCEEeccCCCcEEEEEEcCCCeEEEEEcCCCCccCCeeEEEECCCCCEEEEECCCCEEEEEeC
Confidence            3333333344558999999988887776   356677999999999987888889999999986

>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1

Probab=99.88  E-value=4.3e-19  Score=145.33  Aligned_cols=237  Identities=14%  Similarity=0.269  Sum_probs=174.8

Q ss_pred             ccccceEEEEeCCCCCEEEEeeCCCeEEEEECCCCceeEEeeC------CcccEEEEEEC-CCCCeEEEEec-CCCeEEE
Q 021247           58 GHCLGVVSVAAHPSGIIAASASLDSFVRVFDVDTNASIATLEA------SPSEVWQMQFD-PKGTTLAVAGG-GSASVKL  129 (315)
Q Consensus        58 ~h~~~v~~~~~~~~g~~l~s~~~d~~i~~w~~~~~~~~~~~~~------~~~~v~~~~~~-~~~~~~~~~~~-~d~~i~~  129 (315)
                      ++-..+..++++++|.++++...++.|++||.. +..+..+..      +...+..++++ +++. ++++.. .++.|.+
T Consensus        27 g~~~~p~~v~~~~~g~l~v~~~~~~~i~~~d~~-g~~~~~~~~~~~~~~~~~~p~~i~~~~~~g~-l~v~~~~~~~~i~~  104 (286)
T 1q7f_A           27 GQFTEPSGVAVNAQNDIIVADTNNHRIQIFDKE-GRFKFQFGECGKRDSQLLYPNRVAVVRNSGD-IIVTERSPTHQIQI  104 (286)
T ss_dssp             TCBSCEEEEEECTTCCEEEEEGGGTEEEEECTT-SCEEEEECCBSSSTTCBSSEEEEEEETTTTE-EEEEECGGGCEEEE
T ss_pred             CccCCCceEEECCCCCEEEEECCCCEEEEECCC-CcEEEEecccCCCcccccCceEEEEEcCCCe-EEEEcCCCCCEEEE
Confidence            455678999999999999988889999999987 555555532      23467889994 5554 555553 3789999


Q ss_pred             EecCCcceeeeecCCCCCCCCCCccCCCCcceEEEEECCCCCEEEEecCCCcEEEEEcccceeeeeec--CCccceEEEE
Q 021247          130 WDTATWNLIATLSIPRPEGLKPTDKSSSKKFVLSVAWSPDGRRIACGSMDGTISVFDVTRAKFLHHLE--GHFMPVRSLV  207 (315)
Q Consensus       130 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~s~dg~i~i~d~~~~~~~~~~~--~~~~~v~~~~  207 (315)
                      || .+++.+..+...            ....+..++++|+|+.+++...++.|.+||.. ++....+.  .+...+..++
T Consensus       105 ~d-~~g~~~~~~~~~------------~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~p~~i~  170 (286)
T 1q7f_A          105 YN-QYGQFVRKFGAT------------ILQHPRGVTVDNKGRIIVVECKVMRVIIFDQN-GNVLHKFGCSKHLEFPNGVV  170 (286)
T ss_dssp             EC-TTSCEEEEECTT------------TCSCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEEEECTTTCSSEEEEE
T ss_pred             EC-CCCcEEEEecCc------------cCCCceEEEEeCCCCEEEEECCCCEEEEEcCC-CCEEEEeCCCCccCCcEEEE
Confidence            99 455655544221            12237899999999988888888999999964 44444443  3445689999


Q ss_pred             EcCCCCcEEEEEeCCCeEEEEeCCCCeeEEEeecc--cccEEEEEEcCCCCeEEEEeCCC-cEEEEecCccceehccccc
Q 021247          208 YSPVDPRVLFSASDDTHVHMYDAEGKSLVTAMSGH--ASWVLSVDASPDGAAITTGSSDR-TVKLWDLNMRAAMQSMTNH  284 (315)
Q Consensus       208 ~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~--~~~i~~~~~~~~~~~l~s~~~d~-~i~iwd~~~~~~~~~~~~~  284 (315)
                      ++| +++++++...++.|++||..+. .+..+..+  ...+..++++|+|+++++...++ .|.+|+.. ++.+..+..+
T Consensus       171 ~~~-~g~l~v~~~~~~~i~~~~~~g~-~~~~~~~~g~~~~p~~i~~d~~G~l~v~~~~~~~~i~~~~~~-g~~~~~~~~~  247 (286)
T 1q7f_A          171 VND-KQEIFISDNRAHCVKVFNYEGQ-YLRQIGGEGITNYPIGVGINSNGEILIADNHNNFNLTIFTQD-GQLISALESK  247 (286)
T ss_dssp             ECS-SSEEEEEEGGGTEEEEEETTCC-EEEEESCTTTSCSEEEEEECTTCCEEEEECSSSCEEEEECTT-SCEEEEEEES
T ss_pred             ECC-CCCEEEEECCCCEEEEEcCCCC-EEEEEccCCccCCCcEEEECCCCCEEEEeCCCCEEEEEECCC-CCEEEEEccc
Confidence            998 5678888888999999998654 44444332  36789999999999888888776 99999964 5555555444


Q ss_pred             c--cceEEEEEeeCCCEEEEEeCCCcEEEeec
Q 021247          285 T--DQVWGVSFRPLGGRVVSVSDDKSISLYEY  314 (315)
Q Consensus       285 ~--~~v~~~~~s~~~~~l~s~~~d~~i~i~~~  314 (315)
                      .  ..+.+++++|+|+.+++ +.|++|++|++
T Consensus       248 ~~~~~~~~i~~~~~g~l~vs-~~~~~v~v~~~  278 (286)
T 1q7f_A          248 VKHAQCFDVALMDDGSVVLA-SKDYRLYIYRY  278 (286)
T ss_dssp             SCCSCEEEEEEETTTEEEEE-ETTTEEEEEEC
T ss_pred             CCCCcceeEEECCCCcEEEE-CCCCeEEEEEc
Confidence            3  34789999999976666 67999999987

>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}

Probab=99.88  E-value=1e-21  Score=181.19  Aligned_cols=232  Identities=12%  Similarity=0.110  Sum_probs=165.2

Q ss_pred             EEEeCCCCCEEEEeeCCCeEEEEECCCCceeEEeeCCcc---cEEEEEECCCCCeEEEEec--------CCCeEEEEecC
Q 021247           65 SVAAHPSGIIAASASLDSFVRVFDVDTNASIATLEASPS---EVWQMQFDPKGTTLAVAGG--------GSASVKLWDTA  133 (315)
Q Consensus        65 ~~~~~~~g~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~---~v~~~~~~~~~~~~~~~~~--------~d~~i~~~d~~  133 (315)
                      ++.|+|+|.++++ +.|++|++||+.+++....+..+..   .+..++|+|+|+.++++..        .+++|++||+.
T Consensus        20 ~~~~s~dg~~~~~-~~d~~i~~~~~~~g~~~~~~~~~~~~~~~~~~~~~SpDg~~la~~~~~~~~~~~s~~~~i~~~d~~   98 (719)
T 1z68_A           20 FPNWISGQEYLHQ-SADNNIVLYNIETGQSYTILSNRTMKSVNASNYGLSPDRQFVYLESDYSKLWRYSYTATYYIYDLS   98 (719)
T ss_dssp             CCEESSSSEEEEE-CTTSCEEEEESSSCCEEEEECHHHHHTTTCSEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETT
T ss_pred             ccEECCCCeEEEE-cCCCCEEEEEcCCCcEEEEEccccccccceeeEEECCCCCeEEEEecCceeEEeecceEEEEEECC
Confidence            6789999966554 4699999999999987766655433   3889999999998776543        26899999998


Q ss_pred             CcceeeeecCCCCCCCCCCccCCCCcceEEEEECCCCCEEEEecCCCcEEEEEcccceeeeee-cCCccce---------
Q 021247          134 TWNLIATLSIPRPEGLKPTDKSSSKKFVLSVAWSPDGRRIACGSMDGTISVFDVTRAKFLHHL-EGHFMPV---------  203 (315)
Q Consensus       134 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~s~dg~i~i~d~~~~~~~~~~-~~~~~~v---------  203 (315)
                      +++.+....+.              ..+..++|+|||+.|+.+. ++.|++||+.+++..... .++...+         
T Consensus        99 ~g~~~~~~~l~--------------~~~~~~~~SPDG~~la~~~-~~~i~~~~~~~g~~~~l~~~~~~~~v~~g~~~~v~  163 (719)
T 1z68_A           99 NGEFVRGNELP--------------RPIQYLCWSPVGSKLAYVY-QNNIYLKQRPGDPPFQITFNGRENKIFNGIPDWVY  163 (719)
T ss_dssp             TTEECCSSCCC--------------SSBCCEEECSSTTCEEEEE-TTEEEEESSTTSCCEECCCCCBTTTEEESSCCHHH
T ss_pred             CCccccceecC--------------cccccceECCCCCEEEEEE-CCeEEEEeCCCCCcEEEecCCCcCCeEccccccee
Confidence            87652111111              2367899999999999885 789999999877654322 2222222         


Q ss_pred             --------EEEEEcCCCCcEEEEEeCCC----------------------------------eEEEEeCCCCeeE---E-
Q 021247          204 --------RSLVYSPVDPRVLFSASDDT----------------------------------HVHMYDAEGKSLV---T-  237 (315)
Q Consensus       204 --------~~~~~~~~~~~~l~s~~~d~----------------------------------~i~~wd~~~~~~~---~-  237 (315)
                              ..+.|+| +++.|+.++.|.                                  .|++||+.+++..   . 
T Consensus       164 ~ee~~~~~~~~~wSP-DG~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~~yp~~g~~~~~~~l~~~d~~~~~~~~~~~~  242 (719)
T 1z68_A          164 EEEMLATKYALWWSP-NGKFLAYAEFNDTDIPVIAYSYYGDEQYPRTINIPYPKAGAKNPVVRIFIIDTTYPAYVGPQEV  242 (719)
T ss_dssp             HHHTTCSSCCEEECT-TSSEEEEEEEECTTSCEEEEEECCSSSSCEEEEEECCBTTSCCCEEEEEEEESSCHHHHCCEEC
T ss_pred             eeecccCcccEEECC-CCCEEEEEEECCCCCceEEeeccCCCCCccceeecCCCCCCCCCeeEEEEEECCCCCccceeEc
Confidence                    4799999 566777766442                                  7889999887642   1 


Q ss_pred             ----EeecccccEEEEEEcCCCCeEEEEeCC----CcEEEEe----cCccceehcc----cccccceE-----EEEEeeC
Q 021247          238 ----AMSGHASWVLSVDASPDGAAITTGSSD----RTVKLWD----LNMRAAMQSM----TNHTDQVW-----GVSFRPL  296 (315)
Q Consensus       238 ----~~~~~~~~i~~~~~~~~~~~l~s~~~d----~~i~iwd----~~~~~~~~~~----~~~~~~v~-----~~~~s~~  296 (315)
                          .+.+|...+..++|+|+++++++....    ..|.+||    +.+++....+    ..|...+.     .+.|+||
T Consensus       243 ~~~~~~~~~~~~~~~~~~SpD~~~~~~~~~~~~~~~~l~~~d~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~spd  322 (719)
T 1z68_A          243 PVPAMIASSDYYFSWLTWVTDERVCLQWLKRVQNVSVLSICDFREDWQTWDCPKTQEHIEESRTGWAGGFFVSTPVFSYD  322 (719)
T ss_dssp             CCCHHHHTSCEEEEEEEESSSSEEEEEEEESSTTEEEEEEEEECSSSSSEECCGGGEEEEECSSSCSSSSSCCCCEECTT
T ss_pred             cCCccCCCCcceEEEeEEeCCCeEEEEEeccccCeEEEEEEcccCCCCCCceEEEEecccccCCceEccccCCccEECCC
Confidence                123578889999999998877774432    2488899    7777766655    36666666     7899999


Q ss_pred             CCEEEE--EeCCCcEEEee
Q 021247          297 GGRVVS--VSDDKSISLYE  313 (315)
Q Consensus       297 ~~~l~s--~~~d~~i~i~~  313 (315)
                      |+.|+.  ...+|..+||-
T Consensus       323 g~~l~~~~~~~~g~~~l~~  341 (719)
T 1z68_A          323 AISYYKIFSDKDGYKHIHY  341 (719)
T ss_dssp             SSCEEEEEECTTSCEEEEE
T ss_pred             CCeEEEEEEccCCceEEEE
Confidence            996654  44566555553

>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}

Probab=99.87  E-value=6.7e-21  Score=163.02  Aligned_cols=278  Identities=12%  Similarity=0.054  Sum_probs=178.1

Q ss_pred             cceEEEEEeecCCCCCcEEEEe-eCC--CcEEEEcCCCCcceeeccccccceEEEEeCCCCCEEEEeeCCCeEEEEECCC
Q 021247           15 ESVWAVTWVPATETRPALLLTG-SLD--ETVKLWRPDDMQLERTNTGHCLGVVSVAAHPSGIIAASASLDSFVRVFDVDT   91 (315)
Q Consensus        15 ~~v~~v~~~~~~~~~~~~l~sg-s~d--~~v~~w~~~~~~~~~~~~~h~~~v~~~~~~~~g~~l~s~~~d~~i~~w~~~~   91 (315)
                      ..+..++|+|+++    .|+.. ..+  ..|.+|+..+.+......++......+.|+|+|+.|+.++.++.|++||+.+
T Consensus        36 ~~~~~~~~SpdG~----~l~~~~~~~g~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~spdg~~l~~~~~~~~l~~~d~~~  111 (396)
T 3c5m_A           36 NYFYQKCFTQDGK----KLLFAGDFDGNRNYYLLNLETQQAVQLTEGKGDNTFGGFISTDERAFFYVKNELNLMKVDLET  111 (396)
T ss_dssp             CCTTSCCBCTTSC----EEEEEECTTSSCEEEEEETTTTEEEECCCSSCBCTTTCEECTTSSEEEEEETTTEEEEEETTT
T ss_pred             eeeecCcCCCCCC----EEEEEEecCCCceEEEEECCCCcEEEeecCCCCccccceECCCCCEEEEEEcCCcEEEEECCC
Confidence            3477888999876    34444 333  3678888877665444333332233377999999999999999999999998


Q ss_pred             CceeEEeeCCcccEEE-------------------EEECCCCCeEEEEe----cCCCeEEEEecCCcceeeeecCCCCCC
Q 021247           92 NASIATLEASPSEVWQ-------------------MQFDPKGTTLAVAG----GGSASVKLWDTATWNLIATLSIPRPEG  148 (315)
Q Consensus        92 ~~~~~~~~~~~~~v~~-------------------~~~~~~~~~~~~~~----~~d~~i~~~d~~~~~~~~~~~~~~~~~  148 (315)
                      ++.......+......                   +.++|+++.+++..    ..+..|.+||+.+++......      
T Consensus       112 ~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~~~~~~~~l~~~d~~~g~~~~~~~------  185 (396)
T 3c5m_A          112 LEEQVIYTVDEEWKGYGTWVANSDCTKLVGIEILKRDWQPLTSWEKFAEFYHTNPTCRLIKVDIETGELEVIHQ------  185 (396)
T ss_dssp             CCEEEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHHHTCCCEEEEEEETTTCCEEEEEE------
T ss_pred             CCcEEEEecccccCCCCCEEEeccCCccccccccccccCCCCcceeeeeeccCCCcceEEEEECCCCcEEeecc------
Confidence            8765554433321111                   24567766554332    456789999998766543321      


Q ss_pred             CCCCccCCCCcceEEEEECC-CCCEEEEecCC------CcEEEEEcccceeeeeecCC-ccceEEEEEcCCCCcEEEEEe
Q 021247          149 LKPTDKSSSKKFVLSVAWSP-DGRRIACGSMD------GTISVFDVTRAKFLHHLEGH-FMPVRSLVYSPVDPRVLFSAS  220 (315)
Q Consensus       149 ~~~~~~~~~~~~i~~~~~~~-~~~~l~~~s~d------g~i~i~d~~~~~~~~~~~~~-~~~v~~~~~~~~~~~~l~s~~  220 (315)
                              +...+..+.|+| +++.|+..+.+      ..|.+||+..++........ ...+..+.|+|++..+++.+.
T Consensus       186 --------~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~spdg~~l~~~~~  257 (396)
T 3c5m_A          186 --------DTAWLGHPIYRPFDDSTVGFCHEGPHDLVDARMWLVNEDGSNVRKIKEHAEGESCTHEFWIPDGSAMAYVSY  257 (396)
T ss_dssp             --------ESSCEEEEEEETTEEEEEEEEECSCSSSCSCCCEEEETTSCCCEESSCCCTTEEEEEEEECTTSSCEEEEEE
T ss_pred             --------CCcccccceECCCCCCEEEEEecCCCCCCCceEEEEECCCCceeEeeccCCCccccceEECCCCCEEEEEec
Confidence                    122377899999 78877665443      46888998765433222211 235778899995444444433


Q ss_pred             CC----CeEEEEeCCCCeeEEEeecccccEEEEEEcC-CCCeEEEEe----------------CCCcEEEEecCccceeh
Q 021247          221 DD----THVHMYDAEGKSLVTAMSGHASWVLSVDASP-DGAAITTGS----------------SDRTVKLWDLNMRAAMQ  279 (315)
Q Consensus       221 ~d----~~i~~wd~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~s~~----------------~d~~i~iwd~~~~~~~~  279 (315)
                      .+    +.|++||+.+++...... ... .. +.|+| +|++++.++                .+..|++||+..++. .
T Consensus       258 ~~~~~~~~l~~~d~~~g~~~~l~~-~~~-~~-~~~s~~dg~~l~~~~~~~p~~~~~~~~~~~~~~~~i~~~d~~~~~~-~  333 (396)
T 3c5m_A          258 FKGQTDRVIYKANPETLENEEVMV-MPP-CS-HLMSNFDGSLMVGDGCDAPVDVADADSYNIENDPFLYVLNTKAKSA-Q  333 (396)
T ss_dssp             ETTTCCEEEEEECTTTCCEEEEEE-CCS-EE-EEEECSSSSEEEEEECCC----------CCCCCCEEEEEETTTTBC-C
T ss_pred             CCCCccceEEEEECCCCCeEEeee-CCC-CC-CCccCCCCceEEEecCCcceeeccccccccCCCCcEEEEecccCce-E
Confidence            22    459999998775443222 111 23 88999 999888765                347899999987654 3


Q ss_pred             ccccccc-----------ceEEEEEeeCCCEEEEEeC-CCcEEEeec
Q 021247          280 SMTNHTD-----------QVWGVSFRPLGGRVVSVSD-DKSISLYEY  314 (315)
Q Consensus       280 ~~~~~~~-----------~v~~~~~s~~~~~l~s~~~-d~~i~i~~~  314 (315)
                      .+..+..           .+..++|+|+|++|+.++. ++...||.+
T Consensus       334 ~l~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~s~~~~~~~l~~~  380 (396)
T 3c5m_A          334 KLCKHSTSWDVLDGDRQITHPHPSFTPNDDGVLFTSDFEGVPAIYIA  380 (396)
T ss_dssp             EEEECCCCCCCBTTBSSTTCCCCEECTTSSEEEEEECTTSSCEEEEE
T ss_pred             EccCCCCccccccccccCCCCCceEccCCCeEEEEecCCCCceEEEE
Confidence            3444433           2556789999999887665 567777754

>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...

Probab=99.87  E-value=1.9e-19  Score=152.41  Aligned_cols=256  Identities=13%  Similarity=0.140  Sum_probs=174.2

Q ss_pred             CCCcEEEEcCCCCcceeeccccccceEEEEeCCCCCEEEEee----------CCCeEEEEECCCCceeEEeeCC------
Q 021247           38 LDETVKLWRPDDMQLERTNTGHCLGVVSVAAHPSGIIAASAS----------LDSFVRVFDVDTNASIATLEAS------  101 (315)
Q Consensus        38 ~d~~v~~w~~~~~~~~~~~~~h~~~v~~~~~~~~g~~l~s~~----------~d~~i~~w~~~~~~~~~~~~~~------  101 (315)
                      .|+.|.+||..+.++...++.+..+  .+.++|+|++++++.          .+++|.+||..+.+.+..+...      
T Consensus        29 ~d~~v~v~D~~t~~~~~~i~~g~~p--~i~~spdg~~lyv~~~~~~~~~~g~~~~~v~v~d~~t~~~~~~i~~~~~~~~~  106 (361)
T 2oiz_A           29 TESRVHVYDYTNGKFLGMVPTAFNG--HVQVSNDGKKIYTMTTYHERITRGKRSDVVEVWDADKLTFEKEISLPPKRVQG  106 (361)
T ss_dssp             GGCEEEEEETTTCCEEEEEECCEEE--EEEECTTSSEEEEEEEEETTSSSSCEEEEEEEEETTTCCEEEEEEECTTBCCB
T ss_pred             ccCeEEEEECCCCeEEEEecCCCCC--ceEECCCCCEEEEEEecccccccCCCCCEEEEEECcCCcEEEEEEcCcccccc
Confidence            4789999999888887777666555  899999999888775          3678999999988887776532      


Q ss_pred             cccEEEEEECCCCCeEEEEecC-CCeEEEEecCCcceeee-ecCCCCCC--CCCCc-----cCCCCcceEEEEEC-----
Q 021247          102 PSEVWQMQFDPKGTTLAVAGGG-SASVKLWDTATWNLIAT-LSIPRPEG--LKPTD-----KSSSKKFVLSVAWS-----  167 (315)
Q Consensus       102 ~~~v~~~~~~~~~~~~~~~~~~-d~~i~~~d~~~~~~~~~-~~~~~~~~--~~~~~-----~~~~~~~i~~~~~~-----  167 (315)
                      ......++++|++++++++... ++.|.+||+.+.+.+.. +..+...+  ..+..     .......+..+.+.     
T Consensus       107 g~~p~~i~~spdg~~l~v~n~~~~~~v~v~d~~~~~~~~~~i~~~~~~~v~~~p~~~~~~~~~~~dg~~~~v~~~~~g~~  186 (361)
T 2oiz_A          107 LNYDGLFRQTTDGKFIVLQNASPATSIGIVDVAKGDYVEDVTAAAGCWSVIPQPNRPRSFMTICGDGGLLTINLGEDGKV  186 (361)
T ss_dssp             CCCGGGEEECTTSSEEEEEEESSSEEEEEEETTTTEEEEEEGGGTTEEEEEECTTSSSEEEEEETTSSEEEEEECTTSSE
T ss_pred             CCCcceEEECCCCCEEEEECCCCCCeEEEEECCCCcEEEEEecCCCcceeEEcCCCCeeEEEECCCCcEEEEEECCCCcE
Confidence            2335578999999988877654 68999999999888776 54321100  00000     00000001111111     


Q ss_pred             ----------------------CCCCEEEEecCCCcEEEEEccccee--eeeecC------C----ccceEEEEEcCCCC
Q 021247          168 ----------------------PDGRRIACGSMDGTISVFDVTRAKF--LHHLEG------H----FMPVRSLVYSPVDP  213 (315)
Q Consensus       168 ----------------------~~~~~l~~~s~dg~i~i~d~~~~~~--~~~~~~------~----~~~v~~~~~~~~~~  213 (315)
                                            +++..++..+.++.+.++|+.....  ...+..      +    ......++|+|++.
T Consensus       187 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~~~a~~~dg~  266 (361)
T 2oiz_A          187 ASQSRSKQMFSVKDDPIFIAPALDKDKAHFVSYYGNVYSADFSGDEVKVDGPWSLLNDEDKAKNWVPGGYNLVGLHRASG  266 (361)
T ss_dssp             EEEEECCCCSCTTTSCBCSCCEECSSEEEEEBTTSEEEEEECSSSSCEEEEEEESCCHHHHHTTCEECCSSCEEEETTTT
T ss_pred             eeeccccceEcCCCCceEEEecccCCEEEEEeCCCeEEEEEecCCCceecccccccCccccccccccCCeeEEEEecCCC
Confidence                                  1223334444566677777653321  111110      0    00111267888656


Q ss_pred             cEEEEEe----------CCCeEEEEeCCCCeeEEEeecccccEEEEEEcCCCCeEEEEeCCCcEEEEecCcc--ceehcc
Q 021247          214 RVLFSAS----------DDTHVHMYDAEGKSLVTAMSGHASWVLSVDASPDGAAITTGSSDRTVKLWDLNMR--AAMQSM  281 (315)
Q Consensus       214 ~~l~s~~----------~d~~i~~wd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~d~~i~iwd~~~~--~~~~~~  281 (315)
                      +++++..          ..+.|.+||.++++.+..+..+.  +.+++|+|+|++|++++. ++|.+||..++  +.+.++
T Consensus       267 ~lyv~~~~~~~~~~~~~~~~~v~viD~~t~~~v~~i~~~~--p~~ia~spdg~~l~v~n~-~~v~v~D~~t~~l~~~~~i  343 (361)
T 2oiz_A          267 RMYVFMHPDGKEGTHKFPAAEIWVMDTKTKQRVARIPGRD--ALSMTIDQQRNLMLTLDG-GNVNVYDISQPEPKLLRTI  343 (361)
T ss_dssp             EEEEEEESSCCTTCTTCCCSEEEEEETTTTEEEEEEECTT--CCEEEEETTTTEEEEECS-SCEEEEECSSSSCEEEEEE
T ss_pred             eEEEEEccCCCcccccCCCceEEEEECCCCcEEEEEecCC--eeEEEECCCCCEEEEeCC-CeEEEEECCCCcceeeEEe
Confidence            5555544          13589999999999999888776  899999999999998886 99999999999  888887


Q ss_pred             cccccceEEEEEeeCCC
Q 021247          282 TNHTDQVWGVSFRPLGG  298 (315)
Q Consensus       282 ~~~~~~v~~~~~s~~~~  298 (315)
                      ..+....+.++++|+|+
T Consensus       344 ~~~G~~P~~~~~~p~G~  360 (361)
T 2oiz_A          344 EGAAEASLQVQFHPVGG  360 (361)
T ss_dssp             TTSCSSEEEEEECCCSC
T ss_pred             ccCCCCcEEEEecCCCC
Confidence            66778889999999986

>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*

Probab=99.87  E-value=2.3e-18  Score=143.98  Aligned_cols=252  Identities=12%  Similarity=0.155  Sum_probs=185.1

Q ss_pred             cccceEEEEEeecCCCCCcEEEEeeCC------------------------CcEEEEcCCCCcceeecc-ccccceEEEE
Q 021247           13 HEESVWAVTWVPATETRPALLLTGSLD------------------------ETVKLWRPDDMQLERTNT-GHCLGVVSVA   67 (315)
Q Consensus        13 h~~~v~~v~~~~~~~~~~~~l~sgs~d------------------------~~v~~w~~~~~~~~~~~~-~h~~~v~~~~   67 (315)
                      --..|.+|++.|.++    ++++.+.+                        +.|.+||.++.++..... ++-..+..++
T Consensus        22 ~l~~v~~va~d~~G~----l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~p~gia   97 (329)
T 3fvz_A           22 LPGQVSGVALDSKNN----LVIFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPNNAEILQSSGKNLFYLPHGLS   97 (329)
T ss_dssp             CCSCEEEEEECTTCC----EEEEECTTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECTTTCCEEEEECTTTCSSEEEEE
T ss_pred             ecCCceEEEECCCCC----EEEEeCCCCeEEeeccCcceeecccccccccCCcEEEEECCCCeEEeccCCCccCCceEEE
Confidence            346799999998765    56776666                        479999998777765543 4445788999


Q ss_pred             eCCCCCEEEEeeCCCeEEEEECCCCc-eeEEee---------CCcccEEEEEECCCCCeEEEEec-CCCeEEEEecCCcc
Q 021247           68 AHPSGIIAASASLDSFVRVFDVDTNA-SIATLE---------ASPSEVWQMQFDPKGTTLAVAGG-GSASVKLWDTATWN  136 (315)
Q Consensus        68 ~~~~g~~l~s~~~d~~i~~w~~~~~~-~~~~~~---------~~~~~v~~~~~~~~~~~~~~~~~-~d~~i~~~d~~~~~  136 (315)
                      ++++|.++++...++.|++|+..... .+..+.         .+......++++|++..++++.+ .++.|++|| ..++
T Consensus        98 ~d~~g~l~v~d~~~~~v~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~P~~ia~~~~~g~lyv~d~~~~~~I~~~~-~~g~  176 (329)
T 3fvz_A           98 IDTDGNYWVTDVALHQVFKLDPHSKEGPLLILGRSMQPGSDQNHFCQPTDVAVEPSTGAVFVSDGYCNSRIVQFS-PSGK  176 (329)
T ss_dssp             ECTTSCEEEEETTTTEEEEECTTCSSCCSEEESBTTBCCCSTTCCSSEEEEEECTTTCCEEEEECSSCCEEEEEC-TTSC
T ss_pred             ECCCCCEEEEECCCCEEEEEeCCCCeEEEEEecccCCCCCCccccCCCcEEEEeCCCCeEEEEeCCCCCeEEEEc-CCCC
Confidence            99999999998889999999986553 444442         23346889999994444666765 689999999 4556


Q ss_pred             eeeeecCCCCCCCCCCccCCCCcceEEEEECCC-CCEEEEecCCCcEEEEEcccceeeeeec--CCccceEEEEEcCCCC
Q 021247          137 LIATLSIPRPEGLKPTDKSSSKKFVLSVAWSPD-GRRIACGSMDGTISVFDVTRAKFLHHLE--GHFMPVRSLVYSPVDP  213 (315)
Q Consensus       137 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-~~~l~~~s~dg~i~i~d~~~~~~~~~~~--~~~~~v~~~~~~~~~~  213 (315)
                      .+..+.......   ............++++|+ ++.+++...++.|++||+.+++.+..+.  .+...+..++|+|  +
T Consensus       177 ~~~~~~~~g~~~---~~~~~~~~~p~gia~d~~~g~l~v~d~~~~~I~~~~~~~G~~~~~~~~~~~~~~~~~~~~~p--g  251 (329)
T 3fvz_A          177 FVTQWGEESSGS---SPRPGQFSVPHSLALVPHLDQLCVADRENGRIQCFKTDTKEFVREIKHASFGRNVFAISYIP--G  251 (329)
T ss_dssp             EEEEECEECCSS---SCCTTEESCEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEEEEECCTTTTTCEEEEEEET--T
T ss_pred             EEEEeccCCCCC---CCCCcccCCCcEEEEECCCCEEEEEECCCCEEEEEECCCCcEEEEEeccccCCCcceeeecC--C
Confidence            655553211100   000112234789999998 7777888889999999998888877764  3556788899998  3


Q ss_pred             cEEEEEe-------CCCeEEEEeCCCCeeEEEee---cccccEEEEEEcCCCCeEEEEeCCCcEEEEecCc
Q 021247          214 RVLFSAS-------DDTHVHMYDAEGKSLVTAMS---GHASWVLSVDASPDGAAITTGSSDRTVKLWDLNM  274 (315)
Q Consensus       214 ~~l~s~~-------~d~~i~~wd~~~~~~~~~~~---~~~~~i~~~~~~~~~~~l~s~~~d~~i~iwd~~~  274 (315)
                      ..+.+.+       .+..|++||..+++++..+.   ++...+..++++|+|.++++...+++|++|++..
T Consensus       252 ~~~~~~g~~~v~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~~p~~ia~~~dG~lyvad~~~~~I~~~~~~~  322 (329)
T 3fvz_A          252 FLFAVNGKPYFGDQEPVQGFVMNFSSGEIIDVFKPVRKHFDMPHDIVASEDGTVYIGDAHTNTVWKFTLTE  322 (329)
T ss_dssp             EEEEEECCCCTTCSCCCCEEEEETTTCCEEEEECCSSSCCSSEEEEEECTTSEEEEEESSSCCEEEEEEEE
T ss_pred             EEEEeCCCEEeccCCCcEEEEEEcCCCeEEEEEcCCCCccCCeeEEEECCCCCEEEEECCCCEEEEEeCCc
Confidence            3333333       34589999999888887763   5677799999999998889999999999999864

>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...

Probab=99.87  E-value=5e-20  Score=170.29  Aligned_cols=286  Identities=13%  Similarity=0.177  Sum_probs=189.0

Q ss_pred             ccccceEEEEEeecCCCCCcEEEEeeCCCcEEEEcCCCCcceeeccccccc-----eEEEEeCCCCCEEEEeeCC-----
Q 021247           12 AHEESVWAVTWVPATETRPALLLTGSLDETVKLWRPDDMQLERTNTGHCLG-----VVSVAAHPSGIIAASASLD-----   81 (315)
Q Consensus        12 ~h~~~v~~v~~~~~~~~~~~~l~sgs~d~~v~~w~~~~~~~~~~~~~h~~~-----v~~~~~~~~g~~l~s~~~d-----   81 (315)
                      .+....+.++|+|++.    +++++  |++|++|+..+++....+.+|...     ...+.++|||++|+.++.+     
T Consensus        14 ~~~~~~~~~~w~~dg~----~~~~~--~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~r   87 (740)
T 4a5s_A           14 TYRLKLYSLRWISDHE----YLYKQ--ENNILVFNAEYGNSSVFLENSTFDEFGHSINDYSISPDGQFILLEYNYVKQWR   87 (740)
T ss_dssp             CSCCCCCCEEECSSSE----EEEEE--TTEEEEEETTTCCEEEEECTTTTTTCCSCCCEEEECTTSSEEEEEEEEEECSS
T ss_pred             cccccccccEECCCCc----EEEEc--CCcEEEEECCCCceEEEEechhhhhhcccccceEECCCCCEEEEEECCeeeEE
Confidence            4556788999999874    67775  999999999988877666666543     2347889999999988876     


Q ss_pred             ----CeEEEEECCCCceeEEeeCCcccEEEEEECCCCCeEEEEecCCCeEEEEecCCcceeeeecCCCCCCCCCCccCCC
Q 021247           82 ----SFVRVFDVDTNASIATLEASPSEVWQMQFDPKGTTLAVAGGGSASVKLWDTATWNLIATLSIPRPEGLKPTDKSSS  157 (315)
Q Consensus        82 ----~~i~~w~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~  157 (315)
                          +.+.+||+.+++.. .+..+...+...+|+|+|+.++++  .++.|++||+.+++..... .......   ...++
T Consensus        88 ~~~~~~~~~~d~~~~~~~-~l~~~~~~~~~~~~SPdG~~la~~--~~~~i~~~~~~~~~~~~lt-~~g~~~~---~~~g~  160 (740)
T 4a5s_A           88 HSYTASYDIYDLNKRQLI-TEERIPNNTQWVTWSPVGHKLAYV--WNNDIYVKIEPNLPSYRIT-WTGKEDI---IYNGI  160 (740)
T ss_dssp             SCEEEEEEEEETTTTEEC-CSSCCCTTEEEEEECSSTTCEEEE--ETTEEEEESSTTSCCEECC-SCCBTTT---EEESB
T ss_pred             EccceEEEEEECCCCcEE-EcccCCCcceeeEECCCCCEEEEE--ECCeEEEEECCCCceEEEc-CCCCccc---eecCc
Confidence                55679999998754 355566789999999999988765  4689999999877644321 1111000   00011


Q ss_pred             C---------cceEEEEECCCCCEEEEecCCC------------------------------------cEEEEEccc---
Q 021247          158 K---------KFVLSVAWSPDGRRIACGSMDG------------------------------------TISVFDVTR---  189 (315)
Q Consensus       158 ~---------~~i~~~~~~~~~~~l~~~s~dg------------------------------------~i~i~d~~~---  189 (315)
                      .         .....+.|+|||+.|+..+.|.                                    .|++||+.+   
T Consensus       161 ~~~v~~ee~~~~~~~~~wSpDg~~la~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~yp~~G~~~~~~~l~v~d~~~~~~  240 (740)
T 4a5s_A          161 TDWVYEEEVFSAYSALWWSPNGTFLAYAQFNDTEVPLIEYSFYSDESLQYPKTVRVPYPKAGAVNPTVKFFVVNTDSLSS  240 (740)
T ss_dssp             CCHHHHHHTSSSSBCEEECTTSSEEEEEEEECTTCCEEEEEECCSTTCSSCEEEEEECCBTTSCCCEEEEEEEETTSCCS
T ss_pred             ccccccchhcCCCcceEECCCCCEEEEEEEcccCCceEEEEeecCCCCCCCcceeecCCCCcCcCCeeEEEEEECCCCCC
Confidence            1         1124589999999998764221                                    488899987   


Q ss_pred             ce--eeeeec------CCccceEEEEEcCCCCcEEEEEe----CCCeEEEEeCCCCe----e--EEEe--ecccccEE--
Q 021247          190 AK--FLHHLE------GHFMPVRSLVYSPVDPRVLFSAS----DDTHVHMYDAEGKS----L--VTAM--SGHASWVL--  247 (315)
Q Consensus       190 ~~--~~~~~~------~~~~~v~~~~~~~~~~~~l~s~~----~d~~i~~wd~~~~~----~--~~~~--~~~~~~i~--  247 (315)
                      +.  ....+.      +|...+..++|+| ++++++...    .+..|++||..+++    +  +..+  ..|..++.  
T Consensus       241 ~~~~~~~~l~~~~~~~~~~~~~~~~~wsp-dg~~~~~~~~r~~~~~~i~~~d~~tg~~~~~~~~~~~l~~~~~~~~v~~~  319 (740)
T 4a5s_A          241 VTNATSIQITAPASMLIGDHYLCDVTWAT-QERISLQWLRRIQNYSVMDICDYDESSGRWNCLVARQHIEMSTTGWVGRF  319 (740)
T ss_dssp             SSCCCEEEECCCHHHHTSCEEEEEEEEEE-TTEEEEEEEESSTTEEEEEEEEEETTTTEEEECGGGCEEEECSSSCSSSS
T ss_pred             CCcceEEEecCCccCCCCCeEEEEEEEeC-CCeEEEEEeCCCCCEEEEEEEECCCCccccceeEEEEeeeccCCceEccC
Confidence            62  122232      3677789999999 456555443    23479999988765    1  1111  45666654  


Q ss_pred             ---EEEEcCCCCeEE-EEe-CCC--cEEEEecCccceehcccccccceEEEEEeeCCCEEEEEeCC-----CcEEEee
Q 021247          248 ---SVDASPDGAAIT-TGS-SDR--TVKLWDLNMRAAMQSMTNHTDQVWGVSFRPLGGRVVSVSDD-----KSISLYE  313 (315)
Q Consensus       248 ---~~~~~~~~~~l~-s~~-~d~--~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d-----~~i~i~~  313 (315)
                         ...|+|||+.++ ..+ .+|  .|++|++..+.... +....-.+..+. .++++.|+..+..     +...||.
T Consensus       320 ~~~~p~fspDG~~l~~~~s~~~G~~~l~~~~~~~~~~~~-lT~g~~~v~~~~-~~d~~~i~f~~~~~~~~~~~~~ly~  395 (740)
T 4a5s_A          320 RPSEPHFTLDGNSFYKIISNEEGYRHICYFQIDKKDCTF-ITKGTWEVIGIE-ALTSDYLYYISNEYKGMPGGRNLYK  395 (740)
T ss_dssp             SCCCCEECTTSSEEEEEEECTTSCEEEEEEETTCSSCEE-SCCSSSCEEEEE-EECSSEEEEEESCGGGCTTCBEEEE
T ss_pred             cCCCceEcCCCCEEEEEEEcCCCceEEEEEECCCCceEe-cccCCEEEEEEE-EEeCCEEEEEEecCCCCCceeEEEE
Confidence               688999999766 554 344  58888888655443 333344555543 3557777655443     4555654

>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A

Probab=99.87  E-value=6.1e-20  Score=167.73  Aligned_cols=284  Identities=14%  Similarity=0.075  Sum_probs=187.6

Q ss_pred             hhhccccceEEEEEeecCCCCCcEEEEe--eCCCcEEEEcCCCCcceeeccccccceE---------EEEe--CCCCCE-
Q 021247            9 VENAHEESVWAVTWVPATETRPALLLTG--SLDETVKLWRPDDMQLERTNTGHCLGVV---------SVAA--HPSGII-   74 (315)
Q Consensus         9 ~~~~h~~~v~~v~~~~~~~~~~~~l~sg--s~d~~v~~w~~~~~~~~~~~~~h~~~v~---------~~~~--~~~g~~-   74 (315)
                      .+.+|...+..++|++..    .++++.  +.++...||........+.+..|...+.         ...+  +|+|+. 
T Consensus        18 ~~~~~~~~~~~~~~s~~~----~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~SPDg~~~   93 (662)
T 3azo_A           18 LVASRSGRPACVGAVGDE----VWWVAPRPAEAGRATLVRRRADGAEESALPAPWNVRNRVFEYSGFPWAGVPRPAGGPL   93 (662)
T ss_dssp             HHHHTCSCCEEEEEETTE----EEEEEEETTTTTEEEEEEECTTSCEEESSCTTCCBCCCGGGTCCCCEEEECCSSSSCE
T ss_pred             HHhhcCCccceeEEcCCe----EEEEecCcccCCcEEEEEECCCCCcceeCCCCccccccccccCCccceeeeecCCCeE
Confidence            356899999999999643    255665  5578899998543333444555544444         4434  499987 


Q ss_pred             EEEeeC-CCeEEEEECC--CCceeEEeeC-----CcccEEEEEECCCCCeEEEEecCC---------CeEEEEecCC---
Q 021247           75 AASASL-DSFVRVFDVD--TNASIATLEA-----SPSEVWQMQFDPKGTTLAVAGGGS---------ASVKLWDTAT---  134 (315)
Q Consensus        75 l~s~~~-d~~i~~w~~~--~~~~~~~~~~-----~~~~v~~~~~~~~~~~~~~~~~~d---------~~i~~~d~~~---  134 (315)
                      |+.++. +..|+++++.  .......+..     +...+..++|+|+|+.++++....         .+|.+||+.+   
T Consensus        94 la~~~~~~~~l~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~  173 (662)
T 3azo_A           94 LVFTHFGDQRLYAFEPDAPGGAVPRPLTPVSAVGGGLRWADPVLLPERGEVWCMAEEFTGEGPSDVRRFLAAVPLDGSAA  173 (662)
T ss_dssp             EEEEBTTTCCEEEECTTSTTCCCCEECSCCCCSTTCEEEEEEEEETTTTEEEEEEEEECSSSTTCEEEEEEEEETTSTTT
T ss_pred             EEEEECCCCeEEEEcCCCCCCCCCEeccCCccCCCCccccCcEECCCCCEEEEEEecccCCCCCCceeEEEEEECCCCcc
Confidence            665443 5667777765  2033444444     456788999999999887655321         5899999876   


Q ss_pred             ---cceeeeecCCCCCCCCCCccCCCCcceEEEEECCCCCEEEEecCC--------CcEEEEEcc-cc---eeeeeecCC
Q 021247          135 ---WNLIATLSIPRPEGLKPTDKSSSKKFVLSVAWSPDGRRIACGSMD--------GTISVFDVT-RA---KFLHHLEGH  199 (315)
Q Consensus       135 ---~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~s~d--------g~i~i~d~~-~~---~~~~~~~~~  199 (315)
                         ++.. .+..            .+...+..++|+|||++|+..+.+        ..|++||+. ++   +.......+
T Consensus       174 ~~~~~~~-~l~~------------~~~~~~~~~~~SpDG~~la~~~~~~~~~~~~~~~i~~~d~~~~g~~~~~~~l~~~~  240 (662)
T 3azo_A          174 ADRSAVR-ELSD------------DAHRFVTGPRLSPDGRQAVWLAWDHPRMPWEGTELKTARVTEDGRFADTRTLLGGP  240 (662)
T ss_dssp             TCGGGSE-ESSC------------SCSSEECCCEECTTSSEEEEEEECTTCCTTTCEEEEEEEECTTSCEEEEEEEEEET
T ss_pred             ccCCcee-EEEe------------cCCCcccCceECCCCCEEEEEECCCCCCCCCCcEEEEEEECCCCcccccEEeCCCC
Confidence               4332 1110            122356788999999999877644        479999998 56   433334445


Q ss_pred             ccceEEEEEcCCCCcEEEEEeCCC--eEEEEeCCCCeeEEEeeccccc--------EEEEEEcCCCCeEEEEeCCCcEEE
Q 021247          200 FMPVRSLVYSPVDPRVLFSASDDT--HVHMYDAEGKSLVTAMSGHASW--------VLSVDASPDGAAITTGSSDRTVKL  269 (315)
Q Consensus       200 ~~~v~~~~~~~~~~~~l~s~~~d~--~i~~wd~~~~~~~~~~~~~~~~--------i~~~~~~~~~~~l~s~~~d~~i~i  269 (315)
                      ...+..+.|+|++ ++++++..++  .|.+||..+++.......+...        +..++++|++++++++.. +.+++
T Consensus       241 ~~~~~~~~~spdg-~l~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~p~w~~~~~~~~~~~~~~~~~~~~~-~~~~l  318 (662)
T 3azo_A          241 EEAIAQAEWAPDG-SLIVATDRTGWWNLHRVDPATGAATQLCRREEEFAGPLWTPGMRWFAPLANGLIAVVHGK-GAAVL  318 (662)
T ss_dssp             TBCEEEEEECTTS-CEEEEECTTSSCEEEEECTTTCCEEESSCCSSBSSCCCCSTTCCSEEECTTSCEEEEEBS-SSCEE
T ss_pred             CceEcceEECCCC-eEEEEECCCCCeEEEEEECCCCceeecccccccccCccccccCceEeEeCCCEEEEEEEc-CccEE
Confidence            6788999999954 5888888888  6777887666554433333222        457889999999999998 99999


Q ss_pred             E--ecCccceehcccccccceEEEEEeeCCCEE--EEEeCCCcEEEee
Q 021247          270 W--DLNMRAAMQSMTNHTDQVWGVSFRPLGGRV--VSVSDDKSISLYE  313 (315)
Q Consensus       270 w--d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l--~s~~~d~~i~i~~  313 (315)
                      |  |+..++ +..+..|...+..+. ++++..+  ++.+.+....||.
T Consensus       319 ~~~d~~~~~-~~~l~~~~~~~~~~~-s~~~~~~~~~~~~~~~~~~i~~  364 (662)
T 3azo_A          319 GILDPESGE-LVDAAGPWTEWAATL-TVSGTRAVGVAASPRTAYEVVE  364 (662)
T ss_dssp             EEEETTTTE-EEECCSSCCEEEEEE-EEETTEEEEEEEETTEEEEEEE
T ss_pred             EEEECCCCc-EEEecCCCCeEEEEE-ecCCCEEEEEEcCCCCCCEEEE
Confidence            9  554444 566677777777662 5555544  4556665555554

>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1

Probab=99.86  E-value=2.3e-19  Score=152.25  Aligned_cols=243  Identities=12%  Similarity=0.092  Sum_probs=165.0

Q ss_pred             cceEEEEEeecCCCCCcEEEEeeCCCcEEEEcCC-CCcceeeccccc--cceEEEEeCCCCCE--EEEee----------
Q 021247           15 ESVWAVTWVPATETRPALLLTGSLDETVKLWRPD-DMQLERTNTGHC--LGVVSVAAHPSGII--AASAS----------   79 (315)
Q Consensus        15 ~~v~~v~~~~~~~~~~~~l~sgs~d~~v~~w~~~-~~~~~~~~~~h~--~~v~~~~~~~~g~~--l~s~~----------   79 (315)
                      ..+..++|+|+++    +|++++.+ .|.+|+.+ ++++..... +.  ..+..+.++|+|++  ++++.          
T Consensus        40 ~~~~~~a~spdg~----~l~~~~~~-~v~~~~~~~~g~~~~~~~-~~~~g~~~~~~~spdg~~l~~~~~~~~~~~~~~~~  113 (365)
T 1jof_A           40 EPISWMTFDHERK----NIYGAAMK-KWSSFAVKSPTEIVHEAS-HPIGGHPRANDADTNTRAIFLLAAKQPPYAVYANP  113 (365)
T ss_dssp             CCCSEEEECTTSS----EEEEEEBT-EEEEEEEEETTEEEEEEE-EECCSSGGGGCTTSCCEEEEEEECSSTTCCEEEEE
T ss_pred             CCCcEEEECCCCC----EEEEEccc-eEEEEEECCCCCEEEeeE-eecCCCCccEEECCCCCEEEEEEecCCcceeccce
Confidence            4677899998775    68888888 99999986 555543221 11  22455889999984  45553          


Q ss_pred             ---CCCeEEEEECCC-CceeEEee----CCcccEEEEEECCCCCeEEEEecCCCeEEEEecC-Ccceee--eecCCCCCC
Q 021247           80 ---LDSFVRVFDVDT-NASIATLE----ASPSEVWQMQFDPKGTTLAVAGGGSASVKLWDTA-TWNLIA--TLSIPRPEG  148 (315)
Q Consensus        80 ---~d~~i~~w~~~~-~~~~~~~~----~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~~d~~-~~~~~~--~~~~~~~~~  148 (315)
                         .++++++|++.. ++....+.    .+...+..++|+|+|+.++++...++.|.+||+. +++...  .+..+.   
T Consensus       114 ~~~~~g~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~---  190 (365)
T 1jof_A          114 FYKFAGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPTETYLYSADLTANKLWTHRKLASGEVELVGSVDAPD---  190 (365)
T ss_dssp             ESSSCCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCEEEEEEEECSS---
T ss_pred             eecCCceEEEEccCCCCcCcceEeeEEeCCCCcceEEEECCCCCEEEEEcCCCCEEEEEEECCCCCEEEeeeEecCC---
Confidence               689999999974 54433333    2446788999999999877766667899999997 555432  121110   


Q ss_pred             CCCCccCCCCcceEEEEECCCCCEEEEec-CCCcEEEEEcc--cceee---eee---c----CCcc------ceEEEE-E
Q 021247          149 LKPTDKSSSKKFVLSVAWSPDGRRIACGS-MDGTISVFDVT--RAKFL---HHL---E----GHFM------PVRSLV-Y  208 (315)
Q Consensus       149 ~~~~~~~~~~~~i~~~~~~~~~~~l~~~s-~dg~i~i~d~~--~~~~~---~~~---~----~~~~------~v~~~~-~  208 (315)
                              +...+..++|+|+|++++++. .++.|.+|++.  +++..   ..+   .    +|..      .+..++ |
T Consensus       191 --------~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~  262 (365)
T 1jof_A          191 --------PGDHPRWVAMHPTGNYLYALMEAGNRICEYVIDPATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCAL  262 (365)
T ss_dssp             --------TTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEE
T ss_pred             --------CCCCCCEeEECCCCCEEEEEECCCCeEEEEEEeCCCCcEEEccceEEcCCCCcCCcccccccccccccEEEE
Confidence                    112378899999999887765 47899999764  45432   112   1    1222      478899 9


Q ss_pred             cCCCCcEEEEEeC-CC-----eEEEEeCC-CCeeEE---EeecccccEEEEEEcC---CCCeEEEEeCC-CcEEEEecCc
Q 021247          209 SPVDPRVLFSASD-DT-----HVHMYDAE-GKSLVT---AMSGHASWVLSVDASP---DGAAITTGSSD-RTVKLWDLNM  274 (315)
Q Consensus       209 ~~~~~~~l~s~~~-d~-----~i~~wd~~-~~~~~~---~~~~~~~~i~~~~~~~---~~~~l~s~~~d-~~i~iwd~~~  274 (315)
                      +| ++++|+++.. +.     .|.+|++. ++++..   ....+...+..++|+|   +|++|++++.+ +.|++|+++.
T Consensus       263 sp-dG~~l~v~~~~~~~~~~~~i~v~~~~~~g~~~~~~~~~~~~~~~~~~~a~sp~~~dg~~l~v~~~~~~~v~v~~~~~  341 (365)
T 1jof_A          263 TF-SGKYMFASSRANKFELQGYIAGFKLRDCGSIEKQLFLSPTPTSGGHSNAVSPCPWSDEWMAITDDQEGWLEIYRWKD  341 (365)
T ss_dssp             CT-TSSEEEEEEEESSTTSCCEEEEEEECTTSCEEEEEEEEECSSCCTTCCCEEECTTCTTEEEEECSSSCEEEEEEEET
T ss_pred             CC-CCCEEEEECCCCCCCCCCeEEEEEECCCCCEEEeeeeeecCCCCcccceecCCCcCCCEEEEEEcCCCeEEEEEEch
Confidence            99 4555555543 33     89999985 455433   1333444566789999   89999988875 8999999875


Q ss_pred             c
Q 021247          275 R  275 (315)
Q Consensus       275 ~  275 (315)
                      .
T Consensus       342 ~  342 (365)
T 1jof_A          342 E  342 (365)
T ss_dssp             T
T ss_pred             h
Confidence            4

>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1

Probab=99.85  E-value=2.2e-17  Score=135.08  Aligned_cols=242  Identities=12%  Similarity=0.212  Sum_probs=175.5

Q ss_pred             hccccceEEEEEeecCCCCCcEEEEeeCCCcEEEEcCCCCcceeecc------ccccceEEEEe-CCCCCEEEEeeC-CC
Q 021247           11 NAHEESVWAVTWVPATETRPALLLTGSLDETVKLWRPDDMQLERTNT------GHCLGVVSVAA-HPSGIIAASASL-DS   82 (315)
Q Consensus        11 ~~h~~~v~~v~~~~~~~~~~~~l~sgs~d~~v~~w~~~~~~~~~~~~------~h~~~v~~~~~-~~~g~~l~s~~~-d~   82 (315)
                      .+|-..+.++++.|.+.    ++++...++.|.+|+.+ .+....+.      ++...+..+++ .++|.++++... ++
T Consensus        26 ~g~~~~p~~v~~~~~g~----l~v~~~~~~~i~~~d~~-g~~~~~~~~~~~~~~~~~~p~~i~~~~~~g~l~v~~~~~~~  100 (286)
T 1q7f_A           26 EGQFTEPSGVAVNAQND----IIVADTNNHRIQIFDKE-GRFKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSPTH  100 (286)
T ss_dssp             TTCBSCEEEEEECTTCC----EEEEEGGGTEEEEECTT-SCEEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECGGGC
T ss_pred             CCccCCCceEEECCCCC----EEEEECCCCEEEEECCC-CcEEEEecccCCCcccccCceEEEEEcCCCeEEEEcCCCCC
Confidence            46667899999988653    67777889999999986 44433332      34457889999 578887777643 88


Q ss_pred             eEEEEECCCCceeEEeeC-CcccEEEEEECCCCCeEEEEecCCCeEEEEecCCcceeeeecCCCCCCCCCCccCCCCcce
Q 021247           83 FVRVFDVDTNASIATLEA-SPSEVWQMQFDPKGTTLAVAGGGSASVKLWDTATWNLIATLSIPRPEGLKPTDKSSSKKFV  161 (315)
Q Consensus        83 ~i~~w~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i  161 (315)
                      .|++|+ .+++.+..+.. ....+..++++|+++ ++++...++.|.+||.. ++.+..+...           .....+
T Consensus       101 ~i~~~d-~~g~~~~~~~~~~~~~~~~i~~~~~g~-l~v~~~~~~~i~~~~~~-g~~~~~~~~~-----------~~~~~p  166 (286)
T 1q7f_A          101 QIQIYN-QYGQFVRKFGATILQHPRGVTVDNKGR-IIVVECKVMRVIIFDQN-GNVLHKFGCS-----------KHLEFP  166 (286)
T ss_dssp             EEEEEC-TTSCEEEEECTTTCSCEEEEEECTTSC-EEEEETTTTEEEEECTT-SCEEEEEECT-----------TTCSSE
T ss_pred             EEEEEC-CCCcEEEEecCccCCCceEEEEeCCCC-EEEEECCCCEEEEEcCC-CCEEEEeCCC-----------CccCCc
Confidence            999999 55666655543 335688999999987 56676778899999964 4444444211           112237


Q ss_pred             EEEEECCCCCEEEEecCCCcEEEEEcccceeeeeecCC--ccceEEEEEcCCCCcEEEEEeCCC-eEEEEeCCCCeeEEE
Q 021247          162 LSVAWSPDGRRIACGSMDGTISVFDVTRAKFLHHLEGH--FMPVRSLVYSPVDPRVLFSASDDT-HVHMYDAEGKSLVTA  238 (315)
Q Consensus       162 ~~~~~~~~~~~l~~~s~dg~i~i~d~~~~~~~~~~~~~--~~~v~~~~~~~~~~~~l~s~~~d~-~i~~wd~~~~~~~~~  238 (315)
                      ..++++++|+.+++.+.++.|++||.. ++.+..+..+  ...+..++++| +++++++...++ .|.+||..+ +.+..
T Consensus       167 ~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~g~~~~p~~i~~d~-~G~l~v~~~~~~~~i~~~~~~g-~~~~~  243 (286)
T 1q7f_A          167 NGVVVNDKQEIFISDNRAHCVKVFNYE-GQYLRQIGGEGITNYPIGVGINS-NGEILIADNHNNFNLTIFTQDG-QLISA  243 (286)
T ss_dssp             EEEEECSSSEEEEEEGGGTEEEEEETT-CCEEEEESCTTTSCSEEEEEECT-TCCEEEEECSSSCEEEEECTTS-CEEEE
T ss_pred             EEEEECCCCCEEEEECCCCEEEEEcCC-CCEEEEEccCCccCCCcEEEECC-CCCEEEEeCCCCEEEEEECCCC-CEEEE
Confidence            899999999988888889999999974 4455555432  35688999998 567888887776 999999654 44455


Q ss_pred             eeccc--ccEEEEEEcCCCCeEEEEeCCCcEEEEecCcc
Q 021247          239 MSGHA--SWVLSVDASPDGAAITTGSSDRTVKLWDLNMR  275 (315)
Q Consensus       239 ~~~~~--~~i~~~~~~~~~~~l~s~~~d~~i~iwd~~~~  275 (315)
                      +..+.  ..+.+++++|+|+++++ +.|++|++|++...
T Consensus       244 ~~~~~~~~~~~~i~~~~~g~l~vs-~~~~~v~v~~~~~~  281 (286)
T 1q7f_A          244 LESKVKHAQCFDVALMDDGSVVLA-SKDYRLYIYRYVQL  281 (286)
T ss_dssp             EEESSCCSCEEEEEEETTTEEEEE-ETTTEEEEEECSCC
T ss_pred             EcccCCCCcceeEEECCCCcEEEE-CCCCeEEEEEcccc
Confidence            54433  34789999999987777 67999999998654

>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A

Probab=99.85  E-value=2.4e-18  Score=143.91  Aligned_cols=270  Identities=9%  Similarity=0.034  Sum_probs=185.8

Q ss_pred             cceEEEEEeecCCCCCcEEEEeeCCCcEEEEcCCCCcceeeccccccceEEEEeCCCCCEEEEeeCCCeEEEEECCCCce
Q 021247           15 ESVWAVTWVPATETRPALLLTGSLDETVKLWRPDDMQLERTNTGHCLGVVSVAAHPSGIIAASASLDSFVRVFDVDTNAS   94 (315)
Q Consensus        15 ~~v~~v~~~~~~~~~~~~l~sgs~d~~v~~w~~~~~~~~~~~~~h~~~v~~~~~~~~g~~l~s~~~d~~i~~w~~~~~~~   94 (315)
                      ..|+++.|.|....    ++..+.++.++.|.   .+....+..+...+..+.++++|.+++++..++.|++||..+++.
T Consensus         6 ~~~~~~~~~~~~~~----~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~i~~~d~~~~~~   78 (333)
T 2dg1_A            6 QDLPTLFYSGKSNS----AVPIISESELQTIT---AEPWLEISKKGLQLEGLNFDRQGQLFLLDVFEGNIFKINPETKEI   78 (333)
T ss_dssp             CCCCBCCSCGGGGC----SSCCCCGGGSCEEE---CEEEEEEESSCCCEEEEEECTTSCEEEEETTTCEEEEECTTTCCE
T ss_pred             cccceeeecCCccc----eeEEeecccCcccc---cceeEEEeccCccccCcEECCCCCEEEEECCCCEEEEEeCCCCcE
Confidence            45788888887653    45557788999993   233344455556678999999999888888899999999988776


Q ss_pred             eEEeeCCcccEEEEEECCCCCeEEEEecCC----CeEEEEecCCcceeeeecCCCCCCCCCCccCCCCcceEEEEECCCC
Q 021247           95 IATLEASPSEVWQMQFDPKGTTLAVAGGGS----ASVKLWDTATWNLIATLSIPRPEGLKPTDKSSSKKFVLSVAWSPDG  170 (315)
Q Consensus        95 ~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d----~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~  170 (315)
                      ......+...+..++++|+++.+ ++...+    +.|.+||..+.+....+...           .....+..++++|+|
T Consensus        79 ~~~~~~~~~~~~~i~~~~dg~l~-v~~~~~~~~~~~i~~~d~~~~~~~~~~~~~-----------~~~~~~~~i~~d~~g  146 (333)
T 2dg1_A           79 KRPFVSHKANPAAIKIHKDGRLF-VCYLGDFKSTGGIFAATENGDNLQDIIEDL-----------STAYCIDDMVFDSKG  146 (333)
T ss_dssp             EEEEECSSSSEEEEEECTTSCEE-EEECTTSSSCCEEEEECTTSCSCEEEECSS-----------SSCCCEEEEEECTTS
T ss_pred             EEEeeCCCCCcceEEECCCCcEE-EEeCCCCCCCceEEEEeCCCCEEEEEEccC-----------ccCCcccceEECCCC
Confidence            55443456779999999998744 454444    68999998776543222110           012347899999999


Q ss_pred             CEEEEecC------CCcEEEEEcccceeeeeecCCccceEEEEEcCCCCcEEEEEeCCCeEEEEeCCC-CeeEEE-----
Q 021247          171 RRIACGSM------DGTISVFDVTRAKFLHHLEGHFMPVRSLVYSPVDPRVLFSASDDTHVHMYDAEG-KSLVTA-----  238 (315)
Q Consensus       171 ~~l~~~s~------dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~-~~~~~~-----  238 (315)
                      +.+++...      .+.|..+|..+++... +..+...+..++|+|++..++++...++.|.+||.+. +..+..     
T Consensus       147 ~l~v~~~~~~~~~~~~~l~~~~~~~~~~~~-~~~~~~~~~~i~~~~dg~~l~v~~~~~~~i~~~d~~~~g~~~~~~~~~~  225 (333)
T 2dg1_A          147 GFYFTDFRGYSTNPLGGVYYVSPDFRTVTP-IIQNISVANGIALSTDEKVLWVTETTANRLHRIALEDDGVTIQPFGATI  225 (333)
T ss_dssp             CEEEEECCCBTTBCCEEEEEECTTSCCEEE-EEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSSSEEEEEEEE
T ss_pred             CEEEEeccccccCCCceEEEEeCCCCEEEE-eecCCCcccceEECCCCCEEEEEeCCCCeEEEEEecCCCcCcccccceE
Confidence            87776654      3567777766544332 2223345788999985444566666788999999853 222211     


Q ss_pred             ---eecccccEEEEEEcCCCCeEEEEeCCCcEEEEecCccceehccccccc------ceEEEEEeeCCCEEEEEeCC
Q 021247          239 ---MSGHASWVLSVDASPDGAAITTGSSDRTVKLWDLNMRAAMQSMTNHTD------QVWGVSFRPLGGRVVSVSDD  306 (315)
Q Consensus       239 ---~~~~~~~i~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~------~v~~~~~s~~~~~l~s~~~d  306 (315)
                         ..++ ..+..++++++|+++++...++.|.+||.+ ++.+..+..+..      .+.+++|+|+++.|+.++.+
T Consensus       226 ~~~~~~~-~~~~~i~~d~~G~l~v~~~~~~~v~~~d~~-g~~~~~~~~~~~~~g~~~~~~~~~~~~dg~~L~v~~~~  300 (333)
T 2dg1_A          226 PYYFTGH-EGPDSCCIDSDDNLYVAMYGQGRVLVFNKR-GYPIGQILIPGRDEGHMLRSTHPQFIPGTNQLIICSND  300 (333)
T ss_dssp             EEECCSS-SEEEEEEEBTTCCEEEEEETTTEEEEECTT-SCEEEEEECTTGGGTCSCBCCEEEECTTSCEEEEEEEC
T ss_pred             EEecCCC-CCCCceEECCCCCEEEEEcCCCEEEEECCC-CCEEEEEEcCCCccccccCcceEEECCCCCEEEEEeCc
Confidence               1122 367889999999988888788999999984 555544443322      68899999998877655554

>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}

Probab=99.84  E-value=4.7e-18  Score=142.89  Aligned_cols=259  Identities=14%  Similarity=0.129  Sum_probs=172.0

Q ss_pred             cccceEEEEEeecCCCCCcEEEEe--------eCCCcEEEEcCCCCcceeeccccccceEEEEeCCCCCEEEEeeCC---
Q 021247           13 HEESVWAVTWVPATETRPALLLTG--------SLDETVKLWRPDDMQLERTNTGHCLGVVSVAAHPSGIIAASASLD---   81 (315)
Q Consensus        13 h~~~v~~v~~~~~~~~~~~~l~sg--------s~d~~v~~w~~~~~~~~~~~~~h~~~v~~~~~~~~g~~l~s~~~d---   81 (315)
                      .-..+..+++  ++.   .++++.        +.++.|.+|+.++.+... +    ..+..+.|+|+|+.|+.++.+   
T Consensus        13 ~~~~~~~~~~--dG~---~i~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~-l----~~~~~~~~SpDg~~la~~~~~~~~   82 (347)
T 2gop_A           13 KFAYLSDPRT--KGE---LVAYVLTKANLKDNKYENTIVIENLKNNARRF-I----ENATMPRISPDGKKIAFMRANEEK   82 (347)
T ss_dssp             CSCEEEEEEE--ETT---EEEEEEEEEETTTTEEEEEEEEEETTTCCEEE-E----ESCEEEEECTTSSEEEEEEEETTT
T ss_pred             eeEEcccceE--CCc---EEEEEEeecCcccCCccceEEEEeCCCCceEE-c----ccCCCeEECCCCCEEEEEEeccCC
Confidence            3456677777  333   123322        236779999987765433 2    467889999999988877654   


Q ss_pred             C--eEEEEECCCCceeEEeeCCcccEEEEEECCCCCeEEEEecC--------------------------CCeEEEEecC
Q 021247           82 S--FVRVFDVDTNASIATLEASPSEVWQMQFDPKGTTLAVAGGG--------------------------SASVKLWDTA  133 (315)
Q Consensus        82 ~--~i~~w~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~--------------------------d~~i~~~d~~  133 (315)
                      +  .|++|++.+++........ . +..++|+|+++.++++...                          ...|.+||+.
T Consensus        83 ~~~~l~~~~~~~g~~~~l~~~~-~-~~~~~wspdg~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~  160 (347)
T 2gop_A           83 KVSEIWVADLETLSSKKILEAK-N-IRSLEWNEDSRKLLIVGFKRREDEDFIFEDDVPAWFDDLGFFDGEKTTFWIFDTE  160 (347)
T ss_dssp             TEEEEEEEETTTTEEEEEEEES-E-EEEEEECTTSSEEEEEEECCCC---------CCCC---------CEEEEEEEETT
T ss_pred             CcceEEEEECCCCceEEEEcCC-C-ccceeECCCCCEEEEEEccCCCcCCcEEEcccceeecCcccccCccceEEEEECC
Confidence            2  4888888887665544433 3 8899999999988776532                          3578999998


Q ss_pred             CcceeeeecCCCCCCCCCCccCCCCcceEEEEECCCCCEEEEecCC---------CcEEEEEcccceeeeeecCCccceE
Q 021247          134 TWNLIATLSIPRPEGLKPTDKSSSKKFVLSVAWSPDGRRIACGSMD---------GTISVFDVTRAKFLHHLEGHFMPVR  204 (315)
Q Consensus       134 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~s~d---------g~i~i~d~~~~~~~~~~~~~~~~v~  204 (315)
                      +++.+..+..+               .+..++|+|+| .++++..+         ..|.++|  +++. ..+..+ ..+.
T Consensus       161 ~~~~~~~l~~~---------------~~~~~~~spdg-~~~~~~~~~~~~~~~~~~~l~~~d--~~~~-~~l~~~-~~~~  220 (347)
T 2gop_A          161 SEEVIEEFEKP---------------RFSSGIWHRDK-IVVNVPHREIIPQYFKFWDIYIWE--DGKE-EKMFEK-VSFY  220 (347)
T ss_dssp             TTEEEEEEEEE---------------TTCEEEEETTE-EEEEEECCCSSCCSSCCEEEEEEE--TTEE-EEEEEE-ESEE
T ss_pred             CCeEEeeecCC---------------CcccccCCCCe-EEEEEecccccccccccccEEEeC--CCce-EEeccC-ccee
Confidence            77653333211               25688999999 77766543         2355555  4443 333333 4444


Q ss_pred             EEEEcCCCCcEEEEEeCC--------CeEEEEeCCCCeeEEEeecccccEEE-EEEcCCCCeEEEEeCCCcEEEEecCcc
Q 021247          205 SLVYSPVDPRVLFSASDD--------THVHMYDAEGKSLVTAMSGHASWVLS-VDASPDGAAITTGSSDRTVKLWDLNMR  275 (315)
Q Consensus       205 ~~~~~~~~~~~l~s~~~d--------~~i~~wd~~~~~~~~~~~~~~~~i~~-~~~~~~~~~l~s~~~d~~i~iwd~~~~  275 (315)
                      .+  +| +++.|+.++.+        ..|.+||  +++.......+...+.. +.|+ ++ ++++++.++.+++| +..+
T Consensus       221 ~~--sp-dg~~l~~~~~~~~~~~~~~~~l~~~d--~~~~~~l~~~~~~~~~~~~~~s-dg-~~~~~~~~~~~~l~-~~~g  292 (347)
T 2gop_A          221 AV--DS-DGERILLYGKPEKKYMSEHNKLYIYD--GKEVMGILDEVDRGVGQAKIKD-GK-VYFTLFEEGSVNLY-IWDG  292 (347)
T ss_dssp             EE--EE-CSSCEEEEECCSSSCCCSSCEEEEEC--SSCEEESSTTCCSEEEEEEEET-TE-EEEEEEETTEEEEE-EESS
T ss_pred             eE--CC-CCCEEEEEEccccCCccccceEEEEC--CCceEeccccCCcccCCccEEc-Cc-EEEEEecCCcEEEE-EcCC
Confidence            44  77 45555544432        4788888  44444444455667876 8999 88 89999999999999 8754


Q ss_pred             ceehcccccccceEEEEEeeCCCEEEEEeCCCcE-EEeec
Q 021247          276 AAMQSMTNHTDQVWGVSFRPLGGRVVSVSDDKSI-SLYEY  314 (315)
Q Consensus       276 ~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~i-~i~~~  314 (315)
                      +. ..+..+...+.+++|+|  ..+++++.+++. +||.+
T Consensus       293 ~~-~~~~~~~~~v~~~~~s~--~~~~~~~~~~~~~~l~~~  329 (347)
T 2gop_A          293 EI-KPIAKGRHWIMGFDVDE--IVVYLKETATRLRELFTW  329 (347)
T ss_dssp             SE-EEEECSSSEEEEEEESS--SEEEEEECSSSCCEEEEE
T ss_pred             ce-EEEecCCCeEEeeeeeC--cEEEEEcCCCChHHheEe
Confidence            44 33334567899999999  677777777765 78865

>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*

Probab=99.84  E-value=1.6e-18  Score=145.56  Aligned_cols=249  Identities=14%  Similarity=0.154  Sum_probs=165.1

Q ss_pred             ceEEEEEeecCCCCCcEEEEeeCCCcEEEEcCCCCcceeeccc-c-----ccceEEEEeCCCCCEEEEeeCC--------
Q 021247           16 SVWAVTWVPATETRPALLLTGSLDETVKLWRPDDMQLERTNTG-H-----CLGVVSVAAHPSGIIAASASLD--------   81 (315)
Q Consensus        16 ~v~~v~~~~~~~~~~~~l~sgs~d~~v~~w~~~~~~~~~~~~~-h-----~~~v~~~~~~~~g~~l~s~~~d--------   81 (315)
                      .+..++|+|+++   .+++++..++.|.+||..+.+....+.. +     ...+..+.++|+|+++++++.+        
T Consensus        44 ~~~~~~~s~dg~---~~~v~~~~~~~i~~~d~~t~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~  120 (349)
T 1jmx_B           44 GPGTAMMAPDNR---TAYVLNNHYGDIYGIDLDTCKNTFHANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHY  120 (349)
T ss_dssp             SSCEEEECTTSS---EEEEEETTTTEEEEEETTTTEEEEEEESCCSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCE
T ss_pred             CCceeEECCCCC---EEEEEeCCCCcEEEEeCCCCcEEEEEEcccccccccccccceEECCCCCEEEEEccccccccccc
Confidence            577899998764   2456666789999999988776655432 2     2347889999999999988865        


Q ss_pred             ----CeEEEEECCCCce---eEEeeCCcccEEEEEECCCCCeEEEEecCCCeEEEEecCCcceeeeecCCCCCCC-----
Q 021247           82 ----SFVRVFDVDTNAS---IATLEASPSEVWQMQFDPKGTTLAVAGGGSASVKLWDTATWNLIATLSIPRPEGL-----  149 (315)
Q Consensus        82 ----~~i~~w~~~~~~~---~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~-----  149 (315)
                          +.|++||+.+++.   +..+.. +..+.+++|+|+++ +++. +  +.|.+||..+++.+..+........     
T Consensus       121 ~~~~~~i~~~d~~~~~~~~~~~~~~~-~~~~~~~~~s~dg~-l~~~-~--~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~  195 (349)
T 1jmx_B          121 VVKPPRLEVFSTADGLEAKPVRTFPM-PRQVYLMRAADDGS-LYVA-G--PDIYKMDVKTGKYTVALPLRNWNRKGYSAP  195 (349)
T ss_dssp             EECCCEEEEEEGGGGGGBCCSEEEEC-CSSCCCEEECTTSC-EEEE-S--SSEEEECTTTCCEEEEECSTTCCCTTBCCC
T ss_pred             ccCCCeEEEEECCCccccceeeeccC-CCcccceeECCCCc-EEEc-c--CcEEEEeCCCCceeccccccccCCccccCc
Confidence                8999999987443   333333 34578889999998 5553 3  3499999999887776644321000     


Q ss_pred             -----CCCccCCC-CcceEEEEECCCCCE-----------EEEecCCCcEEEEEcccceeeeeecCCccceEEEEEcCCC
Q 021247          150 -----KPTDKSSS-KKFVLSVAWSPDGRR-----------IACGSMDGTISVFDVTRAKFLHHLEGHFMPVRSLVYSPVD  212 (315)
Q Consensus       150 -----~~~~~~~~-~~~i~~~~~~~~~~~-----------l~~~s~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~  212 (315)
                           .+.....+ ......+++++++..           +.....++.+.++++.         .+...+..+.|+|.+
T Consensus       196 ~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~sp~d  266 (349)
T 1jmx_B          196 DVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSVDLKTGKTHTQEFA---------DLTELYFTGLRSPKD  266 (349)
T ss_dssp             BCCCCCCCCCTTCEEEEEEEEEEC-------CCCEEEEEEEEEETTTCCEEEEEEE---------ECSSCEEEEEECSSC
T ss_pred             cceeeecCCCcceeEEeeeeeeecCCCcCCccccccceeEEEEeccCCcEEecccc---------cCCCcceeeEecCCC
Confidence                 00000000 012345667655422           1123334444444432         244567889999834


Q ss_pred             CcEEEEEeCCCeEEEEeCCCCeeEEEeecccccEEEEEEcCCCCeEEEEeCCCcEEEEecCccceehccccc
Q 021247          213 PRVLFSASDDTHVHMYDAEGKSLVTAMSGHASWVLSVDASPDGAAITTGSSDRTVKLWDLNMRAAMQSMTNH  284 (315)
Q Consensus       213 ~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~  284 (315)
                      +++++++  ++.|.+||+++++.+..+... ..+.+++|+|+++.|++++.++.|++||+++++.+..+...
T Consensus       267 g~~l~~~--~~~v~~~d~~~~~~~~~~~~~-~~~~~~~~s~dg~~l~~~~~~~~v~v~d~~~~~~~~~~~~~  335 (349)
T 1jmx_B          267 PNQIYGV--LNRLAKYDLKQRKLIKAANLD-HTYYCVAFDKKGDKLYLGGTFNDLAVFNPDTLEKVKNIKLP  335 (349)
T ss_dssp             TTEEEEE--ESEEEEEETTTTEEEEEEECS-SCCCEEEECSSSSCEEEESBSSEEEEEETTTTEEEEEEECS
T ss_pred             CCEEEEE--cCeEEEEECccCeEEEEEcCC-CCccceEECCCCCEEEEecCCCeEEEEeccccceeeeeecC
Confidence            4556665  889999999998877766533 34678999999998888888999999999988777665443

>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A

Probab=99.82  E-value=1.7e-18  Score=158.23  Aligned_cols=248  Identities=13%  Similarity=0.042  Sum_probs=173.1

Q ss_pred             eccccccceEEEEeCCCCCEEEEe--eCCCeEEEEECCCCceeEEeeCCcccEE---------EEEEC--CCCCe-EEEE
Q 021247           55 TNTGHCLGVVSVAAHPSGIIAASA--SLDSFVRVFDVDTNASIATLEASPSEVW---------QMQFD--PKGTT-LAVA  120 (315)
Q Consensus        55 ~~~~h~~~v~~~~~~~~g~~l~s~--~~d~~i~~w~~~~~~~~~~~~~~~~~v~---------~~~~~--~~~~~-~~~~  120 (315)
                      .+.+|...+..+++++++.++++.  +.++...||....+.....+..+...+.         ...|+  |+++. ++++
T Consensus        18 ~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~SPDg~~~la~~   97 (662)
T 3azo_A           18 LVASRSGRPACVGAVGDEVWWVAPRPAEAGRATLVRRRADGAEESALPAPWNVRNRVFEYSGFPWAGVPRPAGGPLLVFT   97 (662)
T ss_dssp             HHHHTCSCCEEEEEETTEEEEEEEETTTTTEEEEEEECTTSCEEESSCTTCCBCCCGGGTCCCCEEEECCSSSSCEEEEE
T ss_pred             HHhhcCCccceeEEcCCeEEEEecCcccCCcEEEEEECCCCCcceeCCCCccccccccccCCccceeeeecCCCeEEEEE
Confidence            345688899999999988777777  6688999999655555555555544444         44454  99998 7777


Q ss_pred             ecCCCeEEEEecC--C-cceeeeecCCCCCCCCCCccCCCCcceEEEEECCCCCEEEEecCC----------CcEEEEEc
Q 021247          121 GGGSASVKLWDTA--T-WNLIATLSIPRPEGLKPTDKSSSKKFVLSVAWSPDGRRIACGSMD----------GTISVFDV  187 (315)
Q Consensus       121 ~~~d~~i~~~d~~--~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~s~d----------g~i~i~d~  187 (315)
                      ...+..|.++++.  . ++.. .+...        ....+...+..++|+|||+.|+.++.+          ..|++||+
T Consensus        98 ~~~~~~l~~~~~~~~g~~~~~-~l~~~--------~~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~~~~~~~i~~~~~  168 (662)
T 3azo_A           98 HFGDQRLYAFEPDAPGGAVPR-PLTPV--------SAVGGGLRWADPVLLPERGEVWCMAEEFTGEGPSDVRRFLAAVPL  168 (662)
T ss_dssp             BTTTCCEEEECTTSTTCCCCE-ECSCC--------CCSTTCEEEEEEEEETTTTEEEEEEEEECSSSTTCEEEEEEEEET
T ss_pred             ECCCCeEEEEcCCCCCCCCCE-eccCC--------ccCCCCccccCcEECCCCCEEEEEEecccCCCCCCceeEEEEEEC
Confidence            6667778888775  2 3322 12110        000133457899999999999988876          58999999


Q ss_pred             cc------ceeeeeec-CCccceEEEEEcCCCCcEEEEEeCC--------CeEEEEeCC-CC---eeEEEeecccccEEE
Q 021247          188 TR------AKFLHHLE-GHFMPVRSLVYSPVDPRVLFSASDD--------THVHMYDAE-GK---SLVTAMSGHASWVLS  248 (315)
Q Consensus       188 ~~------~~~~~~~~-~~~~~v~~~~~~~~~~~~l~s~~~d--------~~i~~wd~~-~~---~~~~~~~~~~~~i~~  248 (315)
                      .+      ++. ..+. .+...+..+.|+| +++.|+.++.+        ..|++||+. ++   +......+|...+..
T Consensus       169 ~~~~~~~~~~~-~~l~~~~~~~~~~~~~Sp-DG~~la~~~~~~~~~~~~~~~i~~~d~~~~g~~~~~~~l~~~~~~~~~~  246 (662)
T 3azo_A          169 DGSAAADRSAV-RELSDDAHRFVTGPRLSP-DGRQAVWLAWDHPRMPWEGTELKTARVTEDGRFADTRTLLGGPEEAIAQ  246 (662)
T ss_dssp             TSTTTTCGGGS-EESSCSCSSEECCCEECT-TSSEEEEEEECTTCCTTTCEEEEEEEECTTSCEEEEEEEEEETTBCEEE
T ss_pred             CCCccccCCce-eEEEecCCCcccCceECC-CCCEEEEEECCCCCCCCCCcEEEEEEECCCCcccccEEeCCCCCceEcc
Confidence            87      543 3444 5556777889999 56666655533        479999998 46   444444556788999


Q ss_pred             EEEcCCCCeEEEEeCCC--cEEEEecCccceehcccccccc--------eEEEEEeeCCCEEEEEeCCCcEEEeec
Q 021247          249 VDASPDGAAITTGSSDR--TVKLWDLNMRAAMQSMTNHTDQ--------VWGVSFRPLGGRVVSVSDDKSISLYEY  314 (315)
Q Consensus       249 ~~~~~~~~~l~s~~~d~--~i~iwd~~~~~~~~~~~~~~~~--------v~~~~~s~~~~~l~s~~~d~~i~i~~~  314 (315)
                      +.|+|+|++++++..++  .|.+||+..++.......+...        +..++|+|++..+++++. ++++||.+
T Consensus       247 ~~~spdg~l~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~p~w~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~  321 (662)
T 3azo_A          247 AEWAPDGSLIVATDRTGWWNLHRVDPATGAATQLCRREEEFAGPLWTPGMRWFAPLANGLIAVVHGK-GAAVLGIL  321 (662)
T ss_dssp             EEECTTSCEEEEECTTSSCEEEEECTTTCCEEESSCCSSBSSCCCCSTTCCSEEECTTSCEEEEEBS-SSCEEEEE
T ss_pred             eEECCCCeEEEEECCCCCeEEEEEECCCCceeecccccccccCccccccCceEeEeCCCEEEEEEEc-CccEEEEE
Confidence            99999999888888888  5666666555544333333222        567899999999999998 99999943

>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}

Probab=99.82  E-value=5.5e-17  Score=135.49  Aligned_cols=260  Identities=12%  Similarity=0.086  Sum_probs=183.5

Q ss_pred             CCcEEEEcCCCCcceeecc----c--cccceEEEEeCCCCCEEEEeeCCCeEEEEECCCCceeEEeeCCcccEEEEEECC
Q 021247           39 DETVKLWRPDDMQLERTNT----G--HCLGVVSVAAHPSGIIAASASLDSFVRVFDVDTNASIATLEASPSEVWQMQFDP  112 (315)
Q Consensus        39 d~~v~~w~~~~~~~~~~~~----~--h~~~v~~~~~~~~g~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~v~~~~~~~  112 (315)
                      +++|.++|+++.+....+.    +  .......+.+. .+.++++...++.|.+||..+++.+.++.. ......+++++
T Consensus        16 ~~~l~~~d~~t~~~~~~i~~~~n~~~lg~~~~~i~~~-~~~lyv~~~~~~~v~viD~~t~~~~~~i~~-~~~p~~i~~~~   93 (328)
T 3dsm_A           16 NATLSYYDPATCEVENEVFYRANGFKLGDVAQSMVIR-DGIGWIVVNNSHVIFAIDINTFKEVGRITG-FTSPRYIHFLS   93 (328)
T ss_dssp             CBEEEEEETTTTEEECSHHHHHHSSCCBSCEEEEEEE-TTEEEEEEGGGTEEEEEETTTCCEEEEEEC-CSSEEEEEEEE
T ss_pred             CceEEEEECCCCEEhhhhHhhhcCcccCccceEEEEE-CCEEEEEEcCCCEEEEEECcccEEEEEcCC-CCCCcEEEEeC
Confidence            8899999999887655431    1  11235667764 456666677789999999999998887753 45678889988


Q ss_pred             CCCeEEEEecCCCeEEEEecCCcceeeeecCCCCCCCCCCccCCCCcceEEEEECCCCCEEEEec-CCCcEEEEEcccce
Q 021247          113 KGTTLAVAGGGSASVKLWDTATWNLIATLSIPRPEGLKPTDKSSSKKFVLSVAWSPDGRRIACGS-MDGTISVFDVTRAK  191 (315)
Q Consensus       113 ~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~s-~dg~i~i~d~~~~~  191 (315)
                      ++ .++++...++.|.+||..+++....+......        ........+++ .+++.+++.. .++.|.++|+.+++
T Consensus        94 ~g-~lyv~~~~~~~v~~iD~~t~~~~~~i~~g~~~--------~~~~~p~~i~~-~~~~lyv~~~~~~~~v~viD~~t~~  163 (328)
T 3dsm_A           94 DE-KAYVTQIWDYRIFIINPKTYEITGYIECPDMD--------MESGSTEQMVQ-YGKYVYVNCWSYQNRILKIDTETDK  163 (328)
T ss_dssp             TT-EEEEEEBSCSEEEEEETTTTEEEEEEECTTCC--------TTTCBCCCEEE-ETTEEEEEECTTCCEEEEEETTTTE
T ss_pred             CC-eEEEEECCCCeEEEEECCCCeEEEEEEcCCcc--------ccCCCcceEEE-ECCEEEEEcCCCCCEEEEEECCCCe
Confidence            87 56666657899999999998877766543210        00112345666 3444445544 48899999999998


Q ss_pred             eeeeecCCccceEEEEEcCCCCcEEEEEeCC----------CeEEEEeCCCCeeEEEeecc-cccEEEEEEcCCCCeEEE
Q 021247          192 FLHHLEGHFMPVRSLVYSPVDPRVLFSASDD----------THVHMYDAEGKSLVTAMSGH-ASWVLSVDASPDGAAITT  260 (315)
Q Consensus       192 ~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d----------~~i~~wd~~~~~~~~~~~~~-~~~i~~~~~~~~~~~l~s  260 (315)
                      ....+.... ....+.++| ++++++++..+          +.|.++|.+++++...+.-. ...+..++++|+++.|.+
T Consensus       164 ~~~~i~~g~-~p~~i~~~~-dG~l~v~~~~~~~~~~~~~~~~~v~~id~~t~~v~~~~~~~~g~~p~~la~~~d~~~lyv  241 (328)
T 3dsm_A          164 VVDELTIGI-QPTSLVMDK-YNKMWTITDGGYEGSPYGYEAPSLYRIDAETFTVEKQFKFKLGDWPSEVQLNGTRDTLYW  241 (328)
T ss_dssp             EEEEEECSS-CBCCCEECT-TSEEEEEBCCBCTTCSSCBCCCEEEEEETTTTEEEEEEECCTTCCCEEEEECTTSCEEEE
T ss_pred             EEEEEEcCC-CccceEEcC-CCCEEEEECCCccCCccccCCceEEEEECCCCeEEEEEecCCCCCceeEEEecCCCEEEE
Confidence            877765433 346778888 56677766554          78999999988877665432 236889999999998877


Q ss_pred             EeCCCcEEEEecCccceehc--ccccccceEEEEEeeCCC-EEEEE----eCCCcEEEeec
Q 021247          261 GSSDRTVKLWDLNMRAAMQS--MTNHTDQVWGVSFRPLGG-RVVSV----SDDKSISLYEY  314 (315)
Q Consensus       261 ~~~d~~i~iwd~~~~~~~~~--~~~~~~~v~~~~~s~~~~-~l~s~----~~d~~i~i~~~  314 (315)
                      +..  .|.+||..+++....  +........+++++|+++ ..++.    ..+++|.+||.
T Consensus       242 ~~~--~v~~~d~~t~~~~~~~~~~~~~~~p~gi~vdp~~g~lyva~~~~y~~~~~V~v~d~  300 (328)
T 3dsm_A          242 INN--DIWRMPVEADRVPVRPFLEFRDTKYYGLTVNPNNGEVYVADAIDYQQQGIVYRYSP  300 (328)
T ss_dssp             ESS--SEEEEETTCSSCCSSCSBCCCSSCEEEEEECTTTCCEEEEECTTSSSEEEEEEECT
T ss_pred             Ecc--EEEEEECCCCceeeeeeecCCCCceEEEEEcCCCCeEEEEcccccccCCEEEEECC
Confidence            655  899999987765322  222245788999999544 44555    57899999985

>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}

Probab=99.82  E-value=3.1e-18  Score=146.22  Aligned_cols=254  Identities=13%  Similarity=0.075  Sum_probs=166.2

Q ss_pred             EcCCCCcceeeccccccceEE-----EEeCCCCCEEEEeeC-CC--eEEEEECCCCceeEEeeCCcccEEEEEECCCCCe
Q 021247           45 WRPDDMQLERTNTGHCLGVVS-----VAAHPSGIIAASASL-DS--FVRVFDVDTNASIATLEASPSEVWQMQFDPKGTT  116 (315)
Q Consensus        45 w~~~~~~~~~~~~~h~~~v~~-----~~~~~~g~~l~s~~~-d~--~i~~w~~~~~~~~~~~~~~~~~v~~~~~~~~~~~  116 (315)
                      ++..+......+..|......     ..|+|+|++|+.++. ++  .|.+||+.+++.......+...+....|+|+++.
T Consensus        15 ~~~~~g~~~~~lt~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~spdg~~   94 (388)
T 3pe7_A           15 QDASTGAQVTRLTPPDVTCHRNYFYQKCFTRDGSKLLFGGAFDGPWNYYLLDLNTQVATQLTEGRGDNTFGGFLSPDDDA   94 (388)
T ss_dssp             ECTTTCCEEEECSCTTSCEECCCTTSCCBCTTSCEEEEEECTTSSCEEEEEETTTCEEEECCCSSCBCSSSCEECTTSSE
T ss_pred             ecCCCCcceEEecCCcccccchhhcCccCCCCCCEEEEEEcCCCCceEEEEeCCCCceEEeeeCCCCCccceEEcCCCCE
Confidence            355555555666656554554     789999998888877 66  4888999888776665555555556789999998


Q ss_pred             EEEEecCCCeEEEEecCCcceeeeecCCCCCCCCCCccCCCCcceEE--EEECCCCCEEEE-------------------
Q 021247          117 LAVAGGGSASVKLWDTATWNLIATLSIPRPEGLKPTDKSSSKKFVLS--VAWSPDGRRIAC-------------------  175 (315)
Q Consensus       117 ~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~--~~~~~~~~~l~~-------------------  175 (315)
                      ++++ ..+..|.+||+.+++....+..+.             ..+..  ..++|+++.++.                   
T Consensus        95 l~~~-~~~~~l~~~d~~~g~~~~~~~~~~-------------~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~~~~~~~~~  160 (388)
T 3pe7_A           95 LFYV-KDGRNLMRVDLATLEENVVYQVPA-------------EWVGYGTWVANSDCTKLVGIEIRREDWVPLTDWKKFHE  160 (388)
T ss_dssp             EEEE-ETTTEEEEEETTTCCEEEEEECCT-------------TEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHH
T ss_pred             EEEE-eCCCeEEEEECCCCcceeeeechh-------------hcccccceeECCCCCeeccccccCcccccccccchhhh
Confidence            7655 467899999999877655443321             12322  344889988874                   


Q ss_pred             ---ecCCCcEEEEEcccceeeeeecCCccceEEEEEcCCCCcEEEEEeC------CCeEEEEeCCCCeeEEEeeccc--c
Q 021247          176 ---GSMDGTISVFDVTRAKFLHHLEGHFMPVRSLVYSPVDPRVLFSASD------DTHVHMYDAEGKSLVTAMSGHA--S  244 (315)
Q Consensus       176 ---~s~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~------d~~i~~wd~~~~~~~~~~~~~~--~  244 (315)
                         ...+..|++||+.+++.. .+..+...+..+.|+|.+++.|+....      ...|.++|..++.... +..+.  .
T Consensus       161 ~~~~~~~~~l~~~d~~~g~~~-~l~~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~~-l~~~~~~~  238 (388)
T 3pe7_A          161 FYFTKPCCRLMRVDLKTGEST-VILQENQWLGHPIYRPYDDSTVAFCHEGPHDLVDARMWLINEDGTNMRK-VKTHAEGE  238 (388)
T ss_dssp             HGGGCCCEEEEEEETTTCCEE-EEEEESSCEEEEEEETTEEEEEEEEECSCTTTSSCSEEEEETTSCCCEE-SCCCCTTE
T ss_pred             hhccCCcceEEEEECCCCceE-EeecCCccccccEECCCCCCEEEEEEecCCCCCcceEEEEeCCCCceEE-eeeCCCCc
Confidence               224578999999887643 334455678899999933455554443      3378888887665433 33333  3


Q ss_pred             cEEEEEEcCCCCeEEEEeC-CC----cEEEEecCccce--ehcccccccc---eEEEEEeeCCCEEEEE---------eC
Q 021247          245 WVLSVDASPDGAAITTGSS-DR----TVKLWDLNMRAA--MQSMTNHTDQ---VWGVSFRPLGGRVVSV---------SD  305 (315)
Q Consensus       245 ~i~~~~~~~~~~~l~s~~~-d~----~i~iwd~~~~~~--~~~~~~~~~~---v~~~~~s~~~~~l~s~---------~~  305 (315)
                      .+....|+|+|+.|+..+. ++    .|++||+.+++.  +..+.++...   .....|+|+|++|+..         ..
T Consensus       239 ~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~  318 (388)
T 3pe7_A          239 SCTHEFWVPDGSALVYVSYLKGSPDRFIYSADPETLENRQLTSMPACSHLMSNYDGSLMVGDGSDAPVDVQDDSGYKIEN  318 (388)
T ss_dssp             EEEEEEECTTSSCEEEEEEETTCCCEEEEEECTTTCCEEEEEEECCEEEEEECTTSSEEEEEECCC------------CC
T ss_pred             ccccceECCCCCEEEEEecCCCCCcceEEEEecCCCceEEEEcCCCceeeeecCCCCeEccCCCcceeEeeeccccccCC
Confidence            5778899999997755433 22    399999988763  2222221111   1123799999988754         45


Q ss_pred             CCcEEEeec
Q 021247          306 DKSISLYEY  314 (315)
Q Consensus       306 d~~i~i~~~  314 (315)
                      +..|.+||+
T Consensus       319 ~~~i~~~d~  327 (388)
T 3pe7_A          319 DPFLYVFNM  327 (388)
T ss_dssp             CCEEEEEET
T ss_pred             CCEEEEEec
Confidence            668999986

>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...

Probab=99.82  E-value=1.2e-18  Score=160.97  Aligned_cols=235  Identities=16%  Similarity=0.160  Sum_probs=160.4

Q ss_pred             ceEEEEeCCCCCEEEEeeCCCeEEEEECCCCceeEEeeCCccc-----EEEEEECCCCCeEEEEecC--------CCeEE
Q 021247           62 GVVSVAAHPSGIIAASASLDSFVRVFDVDTNASIATLEASPSE-----VWQMQFDPKGTTLAVAGGG--------SASVK  128 (315)
Q Consensus        62 ~v~~~~~~~~g~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~-----v~~~~~~~~~~~~~~~~~~--------d~~i~  128 (315)
                      ...++.|+|+|.+++++  |++|++||+.++++...+..+...     ...++|+|+++.++++...        .+.+.
T Consensus        18 ~~~~~~w~~dg~~~~~~--~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~r~~~~~~~~   95 (740)
T 4a5s_A           18 KLYSLRWISDHEYLYKQ--ENNILVFNAEYGNSSVFLENSTFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTASYD   95 (740)
T ss_dssp             CCCCEEECSSSEEEEEE--TTEEEEEETTTCCEEEEECTTTTTTCCSCCCEEEECTTSSEEEEEEEEEECSSSCEEEEEE
T ss_pred             cccccEECCCCcEEEEc--CCcEEEEECCCCceEEEEechhhhhhcccccceEECCCCCEEEEEECCeeeEEEccceEEE
Confidence            35578999999988886  999999999999887777665432     2347899999987665431        15678


Q ss_pred             EEecCCcceeeeecCCCCCCCCCCccCCCCcceEEEEECCCCCEEEEecCCCcEEEEEcccceeeee-ecCCccce----
Q 021247          129 LWDTATWNLIATLSIPRPEGLKPTDKSSSKKFVLSVAWSPDGRRIACGSMDGTISVFDVTRAKFLHH-LEGHFMPV----  203 (315)
Q Consensus       129 ~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~s~dg~i~i~d~~~~~~~~~-~~~~~~~v----  203 (315)
                      +||+.+++... +             ..+...+...+|||||+.||.+ .++.|++||+.+++.... ..++...+    
T Consensus        96 ~~d~~~~~~~~-l-------------~~~~~~~~~~~~SPdG~~la~~-~~~~i~~~~~~~~~~~~lt~~g~~~~~~~g~  160 (740)
T 4a5s_A           96 IYDLNKRQLIT-E-------------ERIPNNTQWVTWSPVGHKLAYV-WNNDIYVKIEPNLPSYRITWTGKEDIIYNGI  160 (740)
T ss_dssp             EEETTTTEECC-S-------------SCCCTTEEEEEECSSTTCEEEE-ETTEEEEESSTTSCCEECCSCCBTTTEEESB
T ss_pred             EEECCCCcEEE-c-------------ccCCCcceeeEECCCCCEEEEE-ECCeEEEEECCCCceEEEcCCCCccceecCc
Confidence            99998876432 1             1122347899999999999888 468999999987764432 12222222    


Q ss_pred             -------------EEEEEcCCCCcEEEEEeC-CC-----------------------------------eEEEEeCCC--
Q 021247          204 -------------RSLVYSPVDPRVLFSASD-DT-----------------------------------HVHMYDAEG--  232 (315)
Q Consensus       204 -------------~~~~~~~~~~~~l~s~~~-d~-----------------------------------~i~~wd~~~--  232 (315)
                                   ..+.|+| +++.|+..+. +.                                   .|++||+++  
T Consensus       161 ~~~v~~ee~~~~~~~~~wSp-Dg~~la~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~yp~~G~~~~~~~l~v~d~~~~~  239 (740)
T 4a5s_A          161 TDWVYEEEVFSAYSALWWSP-NGTFLAYAQFNDTEVPLIEYSFYSDESLQYPKTVRVPYPKAGAVNPTVKFFVVNTDSLS  239 (740)
T ss_dssp             CCHHHHHHTSSSSBCEEECT-TSSEEEEEEEECTTCCEEEEEECCSTTCSSCEEEEEECCBTTSCCCEEEEEEEETTSCC
T ss_pred             ccccccchhcCCCcceEECC-CCCEEEEEEEcccCCceEEEEeecCCCCCCCcceeecCCCCcCcCCeeEEEEEECCCCC
Confidence                         3488999 5666665532 11                                   588899988  


Q ss_pred             -Ce--eEEEee------cccccEEEEEEcCCCCeEEEEeC----CCcEEEEecCccc----ee--hcc--cccccceE--
Q 021247          233 -KS--LVTAMS------GHASWVLSVDASPDGAAITTGSS----DRTVKLWDLNMRA----AM--QSM--TNHTDQVW--  289 (315)
Q Consensus       233 -~~--~~~~~~------~~~~~i~~~~~~~~~~~l~s~~~----d~~i~iwd~~~~~----~~--~~~--~~~~~~v~--  289 (315)
                       +.  ....+.      +|...+..++|+|+|+.++....    +..|++||+.+++    ..  .++  ..|...+.  
T Consensus       240 ~~~~~~~~~l~~~~~~~~~~~~~~~~~wspdg~~~~~~~~r~~~~~~i~~~d~~tg~~~~~~~~~~~l~~~~~~~~v~~~  319 (740)
T 4a5s_A          240 SVTNATSIQITAPASMLIGDHYLCDVTWATQERISLQWLRRIQNYSVMDICDYDESSGRWNCLVARQHIEMSTTGWVGRF  319 (740)
T ss_dssp             SSSCCCEEEECCCHHHHTSCEEEEEEEEEETTEEEEEEEESSTTEEEEEEEEEETTTTEEEECGGGCEEEECSSSCSSSS
T ss_pred             CCCcceEEEecCCccCCCCCeEEEEEEEeCCCeEEEEEeCCCCCEEEEEEEECCCCccccceeEEEEeeeccCCceEccC
Confidence             62  222333      37788999999999996655432    3479999998876    22  222  34554443  


Q ss_pred             ---EEEEeeCCCEEE-EEeC-CC--cEEEeec
Q 021247          290 ---GVSFRPLGGRVV-SVSD-DK--SISLYEY  314 (315)
Q Consensus       290 ---~~~~s~~~~~l~-s~~~-d~--~i~i~~~  314 (315)
                         ..+|+|||+.|+ ..+. +|  .|.+|+.
T Consensus       320 ~~~~p~fspDG~~l~~~~s~~~G~~~l~~~~~  351 (740)
T 4a5s_A          320 RPSEPHFTLDGNSFYKIISNEEGYRHICYFQI  351 (740)
T ss_dssp             SCCCCEECTTSSEEEEEEECTTSCEEEEEEET
T ss_pred             cCCCceEcCCCCEEEEEEEcCCCceEEEEEEC
Confidence               688999999887 6664 44  4555553

>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*

Probab=99.81  E-value=3.4e-15  Score=122.49  Aligned_cols=276  Identities=7%  Similarity=0.041  Sum_probs=190.7

Q ss_pred             ccccceEEEEEeecCCCCCcEEEEeeCCCcEEEEcCCCCcceee-ccccccceEEEEeCCCCCEEEEeeCCCeEEEEECC
Q 021247           12 AHEESVWAVTWVPATETRPALLLTGSLDETVKLWRPDDMQLERT-NTGHCLGVVSVAAHPSGIIAASASLDSFVRVFDVD   90 (315)
Q Consensus        12 ~h~~~v~~v~~~~~~~~~~~~l~sgs~d~~v~~w~~~~~~~~~~-~~~h~~~v~~~~~~~~g~~l~s~~~d~~i~~w~~~   90 (315)
                      .+...+.++++.|.+.    +.++...++.|..|+.. .+.... ...+...+..+.++++|.+.++...++.|..|+..
T Consensus        12 ~~~~~~~~i~~d~~g~----l~v~~~~~~~v~~~d~~-~~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~   86 (299)
T 2z2n_A           12 NQDTGPYGITVSDKGK----VWITQHKANMISCINLD-GKITEYPLPTPDAKVMCLTISSDGEVWFTENAANKIGRITKK   86 (299)
T ss_dssp             SSSCCEEEEEECTTSC----EEEEETTTTEEEEECTT-CCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECTT
T ss_pred             CcCCCccceEECCCCC----EEEEecCCCcEEEEcCC-CCeEEecCCcccCceeeEEECCCCCEEEeCCCCCeEEEECCC
Confidence            3456899999987654    45554557899999987 444332 23345678999999999988887778899999986


Q ss_pred             CCceeEEee--CCcccEEEEEECCCCCeEEEEecCCCeEEEEecCCcceeeeecCCCCCCCCCCccCCCCcceEEEEECC
Q 021247           91 TNASIATLE--ASPSEVWQMQFDPKGTTLAVAGGGSASVKLWDTATWNLIATLSIPRPEGLKPTDKSSSKKFVLSVAWSP  168 (315)
Q Consensus        91 ~~~~~~~~~--~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~  168 (315)
                       ++ ...+.  .....+..+.++|++. ++++...++.|.+||. +++.. .+..+.           ....+..+++.+
T Consensus        87 -g~-~~~~~~~~~~~~~~~i~~~~~g~-l~v~~~~~~~i~~~d~-~g~~~-~~~~~~-----------~~~~~~~i~~~~  150 (299)
T 2z2n_A           87 -GI-IKEYTLPNPDSAPYGITEGPNGD-IWFTEMNGNRIGRITD-DGKIR-EYELPN-----------KGSYPSFITLGS  150 (299)
T ss_dssp             -SC-EEEEECSSTTCCEEEEEECTTSC-EEEEETTTTEEEEECT-TCCEE-EEECSS-----------TTCCEEEEEECT
T ss_pred             -Cc-EEEEeCCCcCCCceeeEECCCCC-EEEEecCCceEEEECC-CCCEE-EecCCC-----------CCCCCceEEEcC
Confidence             33 23332  2345688999999876 4556666789999998 44332 221111           122478999999


Q ss_pred             CCCEEEEecCCCcEEEEEcccceeeee-ecCCccceEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCeeEEE-eecccccE
Q 021247          169 DGRRIACGSMDGTISVFDVTRAKFLHH-LEGHFMPVRSLVYSPVDPRVLFSASDDTHVHMYDAEGKSLVTA-MSGHASWV  246 (315)
Q Consensus       169 ~~~~l~~~s~dg~i~i~d~~~~~~~~~-~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~-~~~~~~~i  246 (315)
                      +|+..++...++.|..||. +++.... .......+..+.+.+ ++.++++...++.|.+||. ++..... ...+...+
T Consensus       151 ~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~~~-~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~  227 (299)
T 2z2n_A          151 DNALWFTENQNNAIGRITE-SGDITEFKIPTPASGPVGITKGN-DDALWFVEIIGNKIGRITT-SGEITEFKIPTPNARP  227 (299)
T ss_dssp             TSCEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECT-TSSEEEEETTTTEEEEECT-TCCEEEEECSSTTCCE
T ss_pred             CCCEEEEeCCCCEEEEEcC-CCcEEEeeCCCCCCcceeEEECC-CCCEEEEccCCceEEEECC-CCcEEEEECCCCCCCc
Confidence            9988887777889999998 6654432 333445678899988 4667777767889999999 5544332 23345678


Q ss_pred             EEEEEcCCCCeEEEEeCCCcEEEEecCccceeh-cccccccceEEEEEeeCCCEEEEEeCCCcEEEeec
Q 021247          247 LSVDASPDGAAITTGSSDRTVKLWDLNMRAAMQ-SMTNHTDQVWGVSFRPLGGRVVSVSDDKSISLYEY  314 (315)
Q Consensus       247 ~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~-~~~~~~~~v~~~~~s~~~~~l~s~~~d~~i~i~~~  314 (315)
                      .+++++++|++.++...++.|..||.. +.... ....+...+.++++ ++|...++.. .+.|..++.
T Consensus       228 ~~i~~~~~g~l~v~~~~~~~i~~~d~~-g~~~~~~~~~~~~~~~~i~~-~~g~l~v~~~-~~~l~~~~~  293 (299)
T 2z2n_A          228 HAITAGAGIDLWFTEWGANKIGRLTSN-NIIEEYPIQIKSAEPHGICF-DGETIWFAME-CDKIGKLTL  293 (299)
T ss_dssp             EEEEECSTTCEEEEETTTTEEEEEETT-TEEEEEECSSSSCCEEEEEE-CSSCEEEEET-TTEEEEEEE
T ss_pred             eeEEECCCCCEEEeccCCceEEEECCC-CceEEEeCCCCCCccceEEe-cCCCEEEEec-CCcEEEEEc
Confidence            999999999877766678899999984 33221 12344567899999 8887766655 455655553

>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A

Probab=99.81  E-value=4.7e-17  Score=131.88  Aligned_cols=237  Identities=11%  Similarity=0.022  Sum_probs=167.2

Q ss_pred             ceEEEEeCCCCCEEE-EeeCCCeEEEEECCCCceeEEeeCCcccEEEEEECCCCCeEEEEecCCCeEEEEecCCcceeee
Q 021247           62 GVVSVAAHPSGIIAA-SASLDSFVRVFDVDTNASIATLEASPSEVWQMQFDPKGTTLAVAGGGSASVKLWDTATWNLIAT  140 (315)
Q Consensus        62 ~v~~~~~~~~g~~l~-s~~~d~~i~~w~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~  140 (315)
                      ....+.++++|.+++ +...++.|.+|+..+.............+..++++++++ ++++.. ++.|.+||....... .
T Consensus        25 ~p~~i~~~~~g~l~v~~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~-l~v~~~-~~~i~~~d~~~~~~~-~  101 (270)
T 1rwi_B           25 SPSGVAVDSAGNVYVTSEGMYGRVVKLATGSTGTTVLPFNGLYQPQGLAVDGAGT-VYVTDF-NNRVVTLAAGSNNQT-V  101 (270)
T ss_dssp             CEEEEEECTTCCEEEEECSSSCEEEEECC-----EECCCCSCCSCCCEEECTTCC-EEEEET-TTEEEEECTTCSCCE-E
T ss_pred             CccceEECCCCCEEEEccCCCCcEEEecCCCcccceEeeCCcCCcceeEECCCCC-EEEEcC-CCEEEEEeCCCceEe-e
Confidence            678899999999887 657789999999765443222122234577899999887 555555 889999998654322 1


Q ss_pred             ecCCCCCCCCCCccCCCCcceEEEEECCCCCEEEEecCCCcEEEEEcccceeeeeecCCccceEEEEEcCCCCcEEEEEe
Q 021247          141 LSIPRPEGLKPTDKSSSKKFVLSVAWSPDGRRIACGSMDGTISVFDVTRAKFLHHLEGHFMPVRSLVYSPVDPRVLFSAS  220 (315)
Q Consensus       141 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~s~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~  220 (315)
                      +..            .....+..++++++|+.+++...++.|.+|+..+.............+..++++| +++++++..
T Consensus       102 ~~~------------~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~~~-~g~l~v~~~  168 (270)
T 1rwi_B          102 LPF------------DGLNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQTVLPFTGLNDPDGVAVDN-SGNVYVTDT  168 (270)
T ss_dssp             CCC------------CSCSSEEEEEECTTCCEEEEEGGGTEEEEECTTCCSCEECCCCSCCSCCCEEECT-TCCEEEEEG
T ss_pred             eec------------CCcCCCcceEECCCCCEEEEECCCCEEEEEECCCceeEeeccccCCCceeEEEeC-CCCEEEEEC
Confidence            111            1112478999999999888877888999998765443322223334567889998 556777777


Q ss_pred             CCCeEEEEeCCCCeeEEEeecccccEEEEEEcCCCCeEEEEeCCCcEEEEecCccceehcccccccceEEEEEeeCCCEE
Q 021247          221 DDTHVHMYDAEGKSLVTAMSGHASWVLSVDASPDGAAITTGSSDRTVKLWDLNMRAAMQSMTNHTDQVWGVSFRPLGGRV  300 (315)
Q Consensus       221 ~d~~i~~wd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l  300 (315)
                      .++.|.+||..+.........+...+.+++++++|.++++...++.|.+|+............+...+.+++++|+|+.+
T Consensus       169 ~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~l~  248 (270)
T 1rwi_B          169 DNNRVVKLEAESNNQVVLPFTDITAPWGIAVDEAGTVYVTEHNTNQVVKLLAGSTTSTVLPFTGLNTPLAVAVDSDRTVY  248 (270)
T ss_dssp             GGTEEEEECTTTCCEEECCCSSCCSEEEEEECTTCCEEEEETTTSCEEEECTTCSCCEECCCCSCSCEEEEEECTTCCEE
T ss_pred             CCCEEEEEecCCCceEeecccCCCCceEEEECCCCCEEEEECCCCcEEEEcCCCCcceeeccCCCCCceeEEECCCCCEE
Confidence            78899999988766544333444678899999999877877778899999987644332222333578999999999988


Q ss_pred             EEEeCCCcEEEeec
Q 021247          301 VSVSDDKSISLYEY  314 (315)
Q Consensus       301 ~s~~~d~~i~i~~~  314 (315)
                      ++...+++|++|++
T Consensus       249 v~~~~~~~v~~~~~  262 (270)
T 1rwi_B          249 VADRGNDRVVKLTS  262 (270)
T ss_dssp             EEEGGGTEEEEECC
T ss_pred             EEECCCCEEEEEcC
Confidence            89899999999986

>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...

Probab=99.81  E-value=3.9e-17  Score=138.13  Aligned_cols=221  Identities=13%  Similarity=0.226  Sum_probs=152.0

Q ss_pred             CCCeEEEEECCCCceeEEeeCCcccEEEEEECCCCCeEEEEec---------CCCeEEEEecCCcceeeeecCCCCCCCC
Q 021247           80 LDSFVRVFDVDTNASIATLEASPSEVWQMQFDPKGTTLAVAGG---------GSASVKLWDTATWNLIATLSIPRPEGLK  150 (315)
Q Consensus        80 ~d~~i~~w~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~---------~d~~i~~~d~~~~~~~~~~~~~~~~~~~  150 (315)
                      .|+.|.+||..+++.+..+..+..+  .++++|+++.++++..         .+++|.+||..+.+.+..+......   
T Consensus        29 ~d~~v~v~D~~t~~~~~~i~~g~~p--~i~~spdg~~lyv~~~~~~~~~~g~~~~~v~v~d~~t~~~~~~i~~~~~~---  103 (361)
T 2oiz_A           29 TESRVHVYDYTNGKFLGMVPTAFNG--HVQVSNDGKKIYTMTTYHERITRGKRSDVVEVWDADKLTFEKEISLPPKR---  103 (361)
T ss_dssp             GGCEEEEEETTTCCEEEEEECCEEE--EEEECTTSSEEEEEEEEETTSSSSCEEEEEEEEETTTCCEEEEEEECTTB---
T ss_pred             ccCeEEEEECCCCeEEEEecCCCCC--ceEECCCCCEEEEEEecccccccCCCCCEEEEEECcCCcEEEEEEcCccc---
Confidence            4789999999999888887766555  8999999998877652         3578999999988888777543211   


Q ss_pred             CCccCCCCcceEEEEECCCCCEEEEecC--CCcEEEEEcccceeeee-ecCCccceEEEEEcCCCCcEEEEEeCCCeEEE
Q 021247          151 PTDKSSSKKFVLSVAWSPDGRRIACGSM--DGTISVFDVTRAKFLHH-LEGHFMPVRSLVYSPVDPRVLFSASDDTHVHM  227 (315)
Q Consensus       151 ~~~~~~~~~~i~~~~~~~~~~~l~~~s~--dg~i~i~d~~~~~~~~~-~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~~  227 (315)
                          .........++++|+|++|+++..  ++.|.+||+.+++.+.. +....  ...+.+.|.+...+++.+.|+.+.+
T Consensus       104 ----~~~g~~p~~i~~spdg~~l~v~n~~~~~~v~v~d~~~~~~~~~~i~~~~--~~~v~~~p~~~~~~~~~~~dg~~~~  177 (361)
T 2oiz_A          104 ----VQGLNYDGLFRQTTDGKFIVLQNASPATSIGIVDVAKGDYVEDVTAAAG--CWSVIPQPNRPRSFMTICGDGGLLT  177 (361)
T ss_dssp             ----CCBCCCGGGEEECTTSSEEEEEEESSSEEEEEEETTTTEEEEEEGGGTT--EEEEEECTTSSSEEEEEETTSSEEE
T ss_pred             ----cccCCCcceEEECCCCCEEEEECCCCCCeEEEEECCCCcEEEEEecCCC--cceeEEcCCCCeeEEEECCCCcEEE
Confidence                001122457899999999988763  68999999999888776 44211  1123344544445555555555555


Q ss_pred             EeCCC-CeeE-------------------------------------------------EEee------ccccc----EE
Q 021247          228 YDAEG-KSLV-------------------------------------------------TAMS------GHASW----VL  247 (315)
Q Consensus       228 wd~~~-~~~~-------------------------------------------------~~~~------~~~~~----i~  247 (315)
                      |+... ++..                                                 ....      .+..+    ..
T Consensus       178 v~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~  257 (361)
T 2oiz_A          178 INLGEDGKVASQSRSKQMFSVKDDPIFIAPALDKDKAHFVSYYGNVYSADFSGDEVKVDGPWSLLNDEDKAKNWVPGGYN  257 (361)
T ss_dssp             EEECTTSSEEEEEECCCCSCTTTSCBCSCCEECSSEEEEEBTTSEEEEEECSSSSCEEEEEEESCCHHHHHTTCEECCSS
T ss_pred             EEECCCCcEeeeccccceEcCCCCceEEEecccCCEEEEEeCCCeEEEEEecCCCceecccccccCccccccccccCCee
Confidence            54422 1111                                                 0000      00000    01


Q ss_pred             EEEEcCCCCeEEEEeC-----------CCcEEEEecCccceehcccccccceEEEEEeeCCCEEEEEeCCCcEEEeec
Q 021247          248 SVDASPDGAAITTGSS-----------DRTVKLWDLNMRAAMQSMTNHTDQVWGVSFRPLGGRVVSVSDDKSISLYEY  314 (315)
Q Consensus       248 ~~~~~~~~~~l~s~~~-----------d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~i~i~~~  314 (315)
                      .++++|+++.++++..           .++|.+||+.+++.+.++..+.  +++++|+|+|++|++++. ++|.+||.
T Consensus       258 ~~a~~~dg~~lyv~~~~~~~~~~~~~~~~~v~viD~~t~~~v~~i~~~~--p~~ia~spdg~~l~v~n~-~~v~v~D~  332 (361)
T 2oiz_A          258 LVGLHRASGRMYVFMHPDGKEGTHKFPAAEIWVMDTKTKQRVARIPGRD--ALSMTIDQQRNLMLTLDG-GNVNVYDI  332 (361)
T ss_dssp             CEEEETTTTEEEEEEESSCCTTCTTCCCSEEEEEETTTTEEEEEEECTT--CCEEEEETTTTEEEEECS-SCEEEEEC
T ss_pred             EEEEecCCCeEEEEEccCCCcccccCCCceEEEEECCCCcEEEEEecCC--eeEEEECCCCCEEEEeCC-CeEEEEEC
Confidence            2678898777665542           3479999999999998888776  899999999999998887 99999985

>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}

Probab=99.81  E-value=6.1e-17  Score=133.17  Aligned_cols=234  Identities=10%  Similarity=0.040  Sum_probs=167.6

Q ss_pred             ccccceEEEEeCCCCC-EEEEeeCCCeEEEEECCCCceeEEeeCCcccEEEEEECCCCCeEEEEecCCCeEEEEecCCcc
Q 021247           58 GHCLGVVSVAAHPSGI-IAASASLDSFVRVFDVDTNASIATLEASPSEVWQMQFDPKGTTLAVAGGGSASVKLWDTATWN  136 (315)
Q Consensus        58 ~h~~~v~~~~~~~~g~-~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~~d~~~~~  136 (315)
                      .+......+.|+|+|+ +++++..++.|+.|+..++  ...+..+...+..++++|+++ ++++...++.|.+||..+++
T Consensus        25 ~~~~~~eg~~~d~~g~~l~~~~~~~~~i~~~~~~~~--~~~~~~~~~~~~~l~~~~dg~-l~v~~~~~~~i~~~d~~~g~  101 (296)
T 3e5z_A           25 DGFTWTEGPVYVPARSAVIFSDVRQNRTWAWSDDGQ--LSPEMHPSHHQNGHCLNKQGH-LIACSHGLRRLERQREPGGE  101 (296)
T ss_dssp             CCCSSEEEEEEEGGGTEEEEEEGGGTEEEEEETTSC--EEEEESSCSSEEEEEECTTCC-EEEEETTTTEEEEECSTTCC
T ss_pred             cCCccccCCeEeCCCCEEEEEeCCCCEEEEEECCCC--eEEEECCCCCcceeeECCCCc-EEEEecCCCeEEEEcCCCCc
Confidence            3445567899999998 7888888999999999887  566666677889999999988 45566667899999987766


Q ss_pred             eeeeecCCCCCCCCCCccCCCCcceEEEEECCCCCEEEE----ec-------------CCCcEEEEEcccceeeeeecCC
Q 021247          137 LIATLSIPRPEGLKPTDKSSSKKFVLSVAWSPDGRRIAC----GS-------------MDGTISVFDVTRAKFLHHLEGH  199 (315)
Q Consensus       137 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~----~s-------------~dg~i~i~d~~~~~~~~~~~~~  199 (315)
                      ..........         .....+..++++|+|+++++    |+             ..+.|..++.. ++. ..+..+
T Consensus       102 ~~~~~~~~~~---------~~~~~~~~i~~d~~G~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~-g~~-~~~~~~  170 (296)
T 3e5z_A          102 WESIADSFEG---------KKLNSPNDVCLAPDGSLWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPD-GTL-SAPIRD  170 (296)
T ss_dssp             EEEEECEETT---------EECCCCCCEEECTTSCEEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTT-SCE-EEEECC
T ss_pred             EEEEeeccCC---------CCCCCCCCEEECCCCCEEEECCccccccccccccccccCCCcEEEEECCC-CCE-EEeecC
Confidence            4432211000         01123567999999998886    43             13467777665 433 334445


Q ss_pred             ccceEEEEEcCCCCcEEEEEeCCCeEEEEeCC-CCee---EEEeecccccEEEEEEcCCCCeEEEEeCCCcEEEEecCcc
Q 021247          200 FMPVRSLVYSPVDPRVLFSASDDTHVHMYDAE-GKSL---VTAMSGHASWVLSVDASPDGAAITTGSSDRTVKLWDLNMR  275 (315)
Q Consensus       200 ~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~-~~~~---~~~~~~~~~~i~~~~~~~~~~~l~s~~~d~~i~iwd~~~~  275 (315)
                      ......++|+|+ ++.+++.+.++.|.+|+.. .+++   ...+..+...+.+++++++|++.++.  ++.|.+|+.+ +
T Consensus       171 ~~~~~gi~~s~d-g~~lv~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~p~~i~~d~~G~l~v~~--~~~v~~~~~~-g  246 (296)
T 3e5z_A          171 RVKPNGLAFLPS-GNLLVSDTGDNATHRYCLNARGETEYQGVHFTVEPGKTDGLRVDAGGLIWASA--GDGVHVLTPD-G  246 (296)
T ss_dssp             CSSEEEEEECTT-SCEEEEETTTTEEEEEEECSSSCEEEEEEEECCSSSCCCSEEEBTTSCEEEEE--TTEEEEECTT-S
T ss_pred             CCCCccEEECCC-CCEEEEeCCCCeEEEEEECCCCcCcCCCeEeeCCCCCCCeEEECCCCCEEEEc--CCeEEEECCC-C
Confidence            566789999994 5555888888999999986 4443   22223345566789999999866655  8889999987 6


Q ss_pred             ceehcccccccceEEEEE-eeCCCEEEEEeCCCcEE
Q 021247          276 AAMQSMTNHTDQVWGVSF-RPLGGRVVSVSDDKSIS  310 (315)
Q Consensus       276 ~~~~~~~~~~~~v~~~~~-s~~~~~l~s~~~d~~i~  310 (315)
                      +.+..+..+.. +.+++| +|+++.|+.++.++..+
T Consensus       247 ~~~~~~~~~~~-~~~~~f~~~d~~~L~v~t~~~l~~  281 (296)
T 3e5z_A          247 DELGRVLTPQT-TSNLCFGGPEGRTLYMTVSTEFWS  281 (296)
T ss_dssp             CEEEEEECSSC-CCEEEEESTTSCEEEEEETTEEEE
T ss_pred             CEEEEEECCCC-ceeEEEECCCCCEEEEEcCCeEEE
Confidence            66766766666 889999 58999898888875444

>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*

Probab=99.80  E-value=8.1e-16  Score=136.75  Aligned_cols=282  Identities=12%  Similarity=0.112  Sum_probs=198.3

Q ss_pred             cEEEEeeCCCcEEEEcCCCCcceeeccccccceEEEEeCCCCCEEEEeeCCCeEEEEECC--CCceeEEeeCCcccEEEE
Q 021247           31 ALLLTGSLDETVKLWRPDDMQLERTNTGHCLGVVSVAAHPSGIIAASASLDSFVRVFDVD--TNASIATLEASPSEVWQM  108 (315)
Q Consensus        31 ~~l~sgs~d~~v~~w~~~~~~~~~~~~~h~~~v~~~~~~~~g~~l~s~~~d~~i~~w~~~--~~~~~~~~~~~~~~v~~~  108 (315)
                      .++++...++.|.++|.++.+....+... ..+..+.++|+|+++++++.|+.|.+||+.  +.+.+..+..... ...+
T Consensus       168 ~~~V~~~~~~~V~viD~~t~~v~~~i~~g-~~p~~v~~SpDGr~lyv~~~dg~V~viD~~~~t~~~v~~i~~G~~-P~~i  245 (567)
T 1qks_A          168 LFSVTLRDAGQIALIDGSTYEIKTVLDTG-YAVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIGSE-ARSI  245 (567)
T ss_dssp             EEEEEETTTTEEEEEETTTCCEEEEEECS-SCEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCEEEEEECCSE-EEEE
T ss_pred             eEEEEeCCCCeEEEEECCCCeEEEEEeCC-CCccceEECCCCCEEEEEcCCCeEEEEECCCCCCcEeEEEecCCC-Ccee
Confidence            36777778999999999998887766432 245689999999999999999999999995  7777777766444 5688


Q ss_pred             EEC----CCCCeEEEEecCCCeEEEEecCCcceeeeecCCCCC--CC----C------------CC--------------
Q 021247          109 QFD----PKGTTLAVAGGGSASVKLWDTATWNLIATLSIPRPE--GL----K------------PT--------------  152 (315)
Q Consensus       109 ~~~----~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~--~~----~------------~~--------------  152 (315)
                      +++    |+|++++++...++++.++|..+.+.+..+......  ..    .            +.              
T Consensus       246 a~s~~~~pDGk~l~v~n~~~~~v~ViD~~t~~~~~~i~~~~~~~~~~~~~p~~rva~i~~s~~~~~~vv~~~~~g~v~~v  325 (567)
T 1qks_A          246 ETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGKILLV  325 (567)
T ss_dssp             EECCSTTCTTTEEEEEEEETTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEE
T ss_pred             EEccccCCCCCEEEEEEccCCeEEEEECCCCcEEEEEeccccccccccccCCCceEEEEEcCCCCEEEEEecCCCeEEEE
Confidence            999    699999988888899999999998888776543210  00    0            00              


Q ss_pred             c----------cCCCCcceEEEEECCCCCEEEEe-cCCCcEEEEEcccceeeeeecC-Cccc--eEEEE-EcCCCCcEEE
Q 021247          153 D----------KSSSKKFVLSVAWSPDGRRIACG-SMDGTISVFDVTRAKFLHHLEG-HFMP--VRSLV-YSPVDPRVLF  217 (315)
Q Consensus       153 ~----------~~~~~~~i~~~~~~~~~~~l~~~-s~dg~i~i~d~~~~~~~~~~~~-~~~~--v~~~~-~~~~~~~~l~  217 (315)
                      .          ......+...+.|+|++++|+++ ..++.|.++|+.+++....+.. ...+  -+... ++|..+.+++
T Consensus       326 d~~~~~~~~v~~i~~~~~~~d~~~~pdgr~~~va~~~sn~V~ViD~~t~kl~~~i~vgg~~Phpg~g~~~~~p~~g~v~~  405 (567)
T 1qks_A          326 DYTDLNNLKTTEISAERFLHDGGLDGSHRYFITAANARNKLVVIDTKEGKLVAIEDTGGQTPHPGRGANFVHPTFGPVWA  405 (567)
T ss_dssp             ETTCSSEEEEEEEECCSSEEEEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSSBCCTTCEEEEETTTEEEEE
T ss_pred             ecCCCccceeeeeeccccccCceECCCCCEEEEEeCCCCeEEEEECCCCcEEEEEeccCcCCCCccceeeECCCCCcEEE
Confidence            0          00011234467899999988654 4678899999999987765543 2111  11222 4675566666


Q ss_pred             EEe-CCCeEEEEeCCC-------CeeEEEeecccccEEEEEEcCCCCeEEEEeC-------CCcEEEEecCcc-----ce
Q 021247          218 SAS-DDTHVHMYDAEG-------KSLVTAMSGHASWVLSVDASPDGAAITTGSS-------DRTVKLWDLNMR-----AA  277 (315)
Q Consensus       218 s~~-~d~~i~~wd~~~-------~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~-------d~~i~iwd~~~~-----~~  277 (315)
                      ++. .++.|.++|...       .+.+..+......-..+..+|+++++.+...       ..+|.++|+++.     ..
T Consensus       406 t~~~g~~~Vsvid~~~~~~~~~~~kvv~~i~~~g~g~~~i~~~p~~~~l~v~~~~~~~~~~~~~v~v~d~~~~~~~g~~~  485 (567)
T 1qks_A          406 TSHMGDDSVALIGTDPEGHPDNAWKILDSFPALGGGSLFIKTHPNSQYLYVDATLNPEAEISGSVAVFDIKAMTGDGSDP  485 (567)
T ss_dssp             EEBSSSSEEEEEECCTTTCTTTBTSEEEEEECSCSCCCCEECCTTCSEEEEECTTCSSHHHHTCEEEEEGGGCCCSSSCC
T ss_pred             eCCCCCCeEEEecCCCCCCccccCEEEEEEecCCCCCEEEEeCCCCCeEEEecCCCCCcccCceEEEEECCcccccccCC
Confidence            654 568999999886       5667776654433345778999998887663       358999999876     11


Q ss_pred             -ehccc--------ccccceEEEEEeeCCCEEEEE-e----CCCcEEEeec
Q 021247          278 -MQSMT--------NHTDQVWGVSFRPLGGRVVSV-S----DDKSISLYEY  314 (315)
Q Consensus       278 -~~~~~--------~~~~~v~~~~~s~~~~~l~s~-~----~d~~i~i~~~  314 (315)
                       ++.+.        .-...+..+.|+|+|.++... .    .++.|.|+|.
T Consensus       486 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~s~~~~~~~~~~i~v~D~  536 (567)
T 1qks_A          486 EFKTLPIAEWAGITEGQPRVVQGEFNKDGTEVWFSVWNGKDQESALVVVDD  536 (567)
T ss_dssp             CEEEECHHHHHTCCSSCCEEEEEEECTTSSEEEEEEECCTTSCCEEEEEET
T ss_pred             CcEEeccccccccCCCCcceEeeeECCCCCEEEEEeecCCCCCCcEEEEEC
Confidence             12221        123578899999999987543 2    3789999874

>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A

Probab=99.80  E-value=1.5e-16  Score=128.83  Aligned_cols=242  Identities=10%  Similarity=0.004  Sum_probs=169.2

Q ss_pred             ceEEEEEeecCCCCCcEEE-EeeCCCcEEEEcCCCCcceeeccccccceEEEEeCCCCCEEEEeeCCCeEEEEECCCCce
Q 021247           16 SVWAVTWVPATETRPALLL-TGSLDETVKLWRPDDMQLERTNTGHCLGVVSVAAHPSGIIAASASLDSFVRVFDVDTNAS   94 (315)
Q Consensus        16 ~v~~v~~~~~~~~~~~~l~-sgs~d~~v~~w~~~~~~~~~~~~~h~~~v~~~~~~~~g~~l~s~~~d~~i~~w~~~~~~~   94 (315)
                      ...++++.|.++    +.+ +.+.++.|..|+..+.........+...+..+.++++|.++++.. ++.|.+||......
T Consensus        25 ~p~~i~~~~~g~----l~v~~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~-~~~i~~~d~~~~~~   99 (270)
T 1rwi_B           25 SPSGVAVDSAGN----VYVTSEGMYGRVVKLATGSTGTTVLPFNGLYQPQGLAVDGAGTVYVTDF-NNRVVTLAAGSNNQ   99 (270)
T ss_dssp             CEEEEEECTTCC----EEEEECSSSCEEEEECC-----EECCCCSCCSCCCEEECTTCCEEEEET-TTEEEEECTTCSCC
T ss_pred             CccceEECCCCC----EEEEccCCCCcEEEecCCCcccceEeeCCcCCcceeEECCCCCEEEEcC-CCEEEEEeCCCceE
Confidence            678888887653    455 447789999998765543322223334678899999999777666 88999999876543


Q ss_pred             eEEee-CCcccEEEEEECCCCCeEEEEecCCCeEEEEecCCcceeeeecCCCCCCCCCCccCCCCcceEEEEECCCCCEE
Q 021247           95 IATLE-ASPSEVWQMQFDPKGTTLAVAGGGSASVKLWDTATWNLIATLSIPRPEGLKPTDKSSSKKFVLSVAWSPDGRRI  173 (315)
Q Consensus        95 ~~~~~-~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l  173 (315)
                       ..+. .....+..++++|+++ ++++...++.|.+|+..+.......             ......+..++++++|+.+
T Consensus       100 -~~~~~~~~~~p~~i~~~~~g~-l~v~~~~~~~i~~~~~~~~~~~~~~-------------~~~~~~p~~i~~~~~g~l~  164 (270)
T 1rwi_B          100 -TVLPFDGLNYPEGLAVDTQGA-VYVADRGNNRVVKLAAGSKTQTVLP-------------FTGLNDPDGVAVDNSGNVY  164 (270)
T ss_dssp             -EECCCCSCSSEEEEEECTTCC-EEEEEGGGTEEEEECTTCCSCEECC-------------CCSCCSCCCEEECTTCCEE
T ss_pred             -eeeecCCcCCCcceEECCCCC-EEEEECCCCEEEEEECCCceeEeec-------------cccCCCceeEEEeCCCCEE
Confidence             2332 2235688999999887 5566667789999976543322110             0011235689999999977


Q ss_pred             EEecCCCcEEEEEcccceeeeeecCCccceEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCeeEEEeecccccEEEEEEcC
Q 021247          174 ACGSMDGTISVFDVTRAKFLHHLEGHFMPVRSLVYSPVDPRVLFSASDDTHVHMYDAEGKSLVTAMSGHASWVLSVDASP  253 (315)
Q Consensus       174 ~~~s~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~i~~~~~~~  253 (315)
                      ++...++.|.+||............+...+..+++.+ ++.++++...++.|.+||..+.........+...+.+++++|
T Consensus       165 v~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~d~-~g~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~p~~i~~~~  243 (270)
T 1rwi_B          165 VTDTDNNRVVKLEAESNNQVVLPFTDITAPWGIAVDE-AGTVYVTEHNTNQVVKLLAGSTTSTVLPFTGLNTPLAVAVDS  243 (270)
T ss_dssp             EEEGGGTEEEEECTTTCCEEECCCSSCCSEEEEEECT-TCCEEEEETTTSCEEEECTTCSCCEECCCCSCSCEEEEEECT
T ss_pred             EEECCCCEEEEEecCCCceEeecccCCCCceEEEECC-CCCEEEEECCCCcEEEEcCCCCcceeeccCCCCCceeEEECC
Confidence            7777788999999876655443333445678999998 457777777888999999877654433333445689999999


Q ss_pred             CCCeEEEEeCCCcEEEEecCcccee
Q 021247          254 DGAAITTGSSDRTVKLWDLNMRAAM  278 (315)
Q Consensus       254 ~~~~l~s~~~d~~i~iwd~~~~~~~  278 (315)
                      +|+++++...+++|+++++...+.+
T Consensus       244 ~g~l~v~~~~~~~v~~~~~~~~~~~  268 (270)
T 1rwi_B          244 DRTVYVADRGNDRVVKLTSLEHHHH  268 (270)
T ss_dssp             TCCEEEEEGGGTEEEEECCCGGGSC
T ss_pred             CCCEEEEECCCCEEEEEcCCCcccc
Confidence            9998899999999999998865543

>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*

Probab=99.79  E-value=1.8e-16  Score=145.88  Aligned_cols=246  Identities=12%  Similarity=0.035  Sum_probs=166.9

Q ss_pred             ccccceEEEEeCCCCCEEEEeeCCC-----eEEEEECCCCceeEEeeCCcccEEEEEECCCCCeEEEEecCCC-------
Q 021247           58 GHCLGVVSVAAHPSGIIAASASLDS-----FVRVFDVDTNASIATLEASPSEVWQMQFDPKGTTLAVAGGGSA-------  125 (315)
Q Consensus        58 ~h~~~v~~~~~~~~g~~l~s~~~d~-----~i~~w~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~-------  125 (315)
                      +|...+..+.|+|+|++|+.+..++     .|++||+.+++....... ...+..++|+|+++.++++.....       
T Consensus       122 ~~~~~~~~~~~SPDg~~la~~~~~~G~~~~~i~v~d~~tg~~~~~~~~-~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~  200 (710)
T 2xdw_A          122 DGTVALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPDVLE-RVKFSCMAWTHDGKGMFYNAYPQQDGKSDGT  200 (710)
T ss_dssp             TSCEEEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEEEEE-EECSCCEEECTTSSEEEEEECCCCSSCCSSS
T ss_pred             CCCEEEEEEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCccccc-CcccceEEEEeCCCEEEEEEECCcccccccc
Confidence            3545688999999999988665443     899999999887653221 122567899999998877654322       


Q ss_pred             --------eEEEEecCCcceeeeecCCCCCCCCCCccCCCCcceEEEEECCCCCEEEEecC-----CCcEEEEEccc---
Q 021247          126 --------SVKLWDTATWNLIATLSIPRPEGLKPTDKSSSKKFVLSVAWSPDGRRIACGSM-----DGTISVFDVTR---  189 (315)
Q Consensus       126 --------~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~s~-----dg~i~i~d~~~---  189 (315)
                              .|++|++.+.+....+....         ..+..++..+.|+|+|++|+..+.     +..|++||+.+   
T Consensus       201 ~~~~~~~~~v~~~~l~t~~~~~~~v~~~---------~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~  271 (710)
T 2xdw_A          201 ETSTNLHQKLYYHVLGTDQSEDILCAEF---------PDEPKWMGGAELSDDGRYVLLSIREGCDPVNRLWYCDLQQESN  271 (710)
T ss_dssp             CCCCCCCCEEEEEETTSCGGGCEEEECC---------TTCTTCEEEEEECTTSCEEEEEEECSSSSCCEEEEEEGGGSSS
T ss_pred             ccccCCCCEEEEEECCCCcccceEEecc---------CCCCeEEEEEEEcCCCCEEEEEEEccCCCccEEEEEECccccc
Confidence                    39999987754221111110         112334678999999999887654     56899999976   


Q ss_pred             ---ce-eeeeecCCccceEEEEEcCCCCcEEEEEeCC---CeEEEEeCCCCe--eEEEeecccc--cEEEEEEcCCCCeE
Q 021247          190 ---AK-FLHHLEGHFMPVRSLVYSPVDPRVLFSASDD---THVHMYDAEGKS--LVTAMSGHAS--WVLSVDASPDGAAI  258 (315)
Q Consensus       190 ---~~-~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d---~~i~~wd~~~~~--~~~~~~~~~~--~i~~~~~~~~~~~l  258 (315)
                         +. ....+..+...+.. .|+|++..+++.+..+   ..|.+||..++.  ....+..|..  .+..+.+++++.++
T Consensus       272 ~~~~~~~~~~l~~~~~~~~~-~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~lv  350 (710)
T 2xdw_A          272 GITGILKWVKLIDNFEGEYD-YVTNEGTVFTFKTNRHSPNYRLINIDFTDPEESKWKVLVPEHEKDVLEWVACVRSNFLV  350 (710)
T ss_dssp             SSCSSCCCEEEECSSSSCEE-EEEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSSCEEEEEEEETTTEEE
T ss_pred             ccCCccceEEeeCCCCcEEE-EEeccCCEEEEEECCCCCCCEEEEEeCCCCCcccceeccCCCCCCeEEEEEEEcCCEEE
Confidence               43 34555555555544 4777555555555443   479999988653  2344444543  67789999888888


Q ss_pred             EEEeCCCc--EEEEecCccceehcccccccceEEEEEeeCCCEEE-EEe---CCCcEEEeec
Q 021247          259 TTGSSDRT--VKLWDLNMRAAMQSMTNHTDQVWGVSFRPLGGRVV-SVS---DDKSISLYEY  314 (315)
Q Consensus       259 ~s~~~d~~--i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~-s~~---~d~~i~i~~~  314 (315)
                      ++...|+.  |.+|++..++.++.+..+.+.+..++++|++..++ +.+   ..++|.+||+
T Consensus       351 ~~~~~~g~~~l~~~~~~~g~~~~~l~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~  412 (710)
T 2xdw_A          351 LCYLHDVKNTLQLHDLATGALLKIFPLEVGSVVGYSGQKKDTEIFYQFTSFLSPGIIYHCDL  412 (710)
T ss_dssp             EEEEETTEEEEEEEETTTCCEEEEECCCSSEEEEEECCTTCSEEEEEEECSSCCCEEEEEET
T ss_pred             EEEEECCEEEEEEEECCCCCEEEecCCCCceEEEEecCCCCCEEEEEEeCCCCCCEEEEEEC
Confidence            99988985  55567756766666777777888999999988765 323   2468888875

>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}

Probab=99.78  E-value=8e-16  Score=125.01  Aligned_cols=218  Identities=12%  Similarity=0.093  Sum_probs=166.1

Q ss_pred             cEEEEeeCCCcEEEEcCCCCcceeeccccc-cceEEEEeCCCCCEEEEeeCCCeEEEEECCCCceeEEeeCCc-ccEEEE
Q 021247           31 ALLLTGSLDETVKLWRPDDMQLERTNTGHC-LGVVSVAAHPSGIIAASASLDSFVRVFDVDTNASIATLEASP-SEVWQM  108 (315)
Q Consensus        31 ~~l~sgs~d~~v~~w~~~~~~~~~~~~~h~-~~v~~~~~~~~g~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~-~~v~~~  108 (315)
                      .+|++++.|+.|++||.++++....+..+. ..+.++.+.|+|++++  +.++.|+.||. +++.+..+.... ..+..+
T Consensus         6 ~~lv~~~~~~~v~~~d~~tG~~~w~~~~~~~~~~~~~~~~pdG~ilv--s~~~~V~~~d~-~G~~~W~~~~~~~~~~~~~   82 (276)
T 3no2_A            6 HLLVGGSGWNKIAIINKDTKEIVWEYPLEKGWECNSVAATKAGEILF--SYSKGAKMITR-DGRELWNIAAPAGCEMQTA   82 (276)
T ss_dssp             EEEEECTTCSEEEEEETTTTEEEEEEECCTTCCCCEEEECTTSCEEE--ECBSEEEEECT-TSCEEEEEECCTTCEEEEE
T ss_pred             cEEEeeCCCCEEEEEECCCCeEEEEeCCCccCCCcCeEECCCCCEEE--eCCCCEEEECC-CCCEEEEEcCCCCcccccc
Confidence            479999999999999998999888877665 4688999999999998  34778999999 788888887643 478889


Q ss_pred             EECCCCCeEEEEecCCCeEEEEecCCcceeeeecCCCCCCCCCCccCCCCcceEEEEECCCCCEEEEecCCCcEEEEEcc
Q 021247          109 QFDPKGTTLAVAGGGSASVKLWDTATWNLIATLSIPRPEGLKPTDKSSSKKFVLSVAWSPDGRRIACGSMDGTISVFDVT  188 (315)
Q Consensus       109 ~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~s~dg~i~i~d~~  188 (315)
                      .+.|+++.+++.++.++.+..+|. .++.+..+......       .........++..++|+++++.+.++.|..||..
T Consensus        83 ~~~~dG~~lv~~~~~~~~v~~vd~-~Gk~l~~~~~~~~~-------~~~~~~~~~v~~~~~G~~lv~~~~~~~v~~~d~~  154 (276)
T 3no2_A           83 RILPDGNALVAWCGHPSTILEVNM-KGEVLSKTEFETGI-------ERPHAQFRQINKNKKGNYLVPLFATSEVREIAPN  154 (276)
T ss_dssp             EECTTSCEEEEEESTTEEEEEECT-TSCEEEEEEECCSC-------SSGGGSCSCCEECTTSCEEEEETTTTEEEEECTT
T ss_pred             EECCCCCEEEEecCCCCEEEEEeC-CCCEEEEEeccCCC-------CcccccccCceECCCCCEEEEecCCCEEEEECCC
Confidence            999999876554433777888875 67777776543210       0011123455778999999999999999999998


Q ss_pred             cceeeeeecCCccceEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCeeEEEeecc------cccEEEEEEcCCCCeEEEEe
Q 021247          189 RAKFLHHLEGHFMPVRSLVYSPVDPRVLFSASDDTHVHMYDAEGKSLVTAMSGH------ASWVLSVDASPDGAAITTGS  262 (315)
Q Consensus       189 ~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~------~~~i~~~~~~~~~~~l~s~~  262 (315)
                       ++.+-.+.... .+.++...+ ++++++++..++.|..+|.++++.+-.+..+      ...+..+...++|.++++..
T Consensus       155 -G~~~w~~~~~~-~~~~~~~~~-~g~~~v~~~~~~~v~~~d~~tG~~~w~~~~~~~~~~~l~~~~~~~~~~~G~i~v~~~  231 (276)
T 3no2_A          155 -GQLLNSVKLSG-TPFSSAFLD-NGDCLVACGDAHCFVQLNLESNRIVRRVNANDIEGVQLFFVAQLFPLQNGGLYICNW  231 (276)
T ss_dssp             -SCEEEEEECSS-CCCEEEECT-TSCEEEECBTTSEEEEECTTTCCEEEEEEGGGSBSCCCSEEEEEEECTTSCEEEEEE
T ss_pred             -CCEEEEEECCC-CccceeEcC-CCCEEEEeCCCCeEEEEeCcCCcEEEEecCCCCCCccccccccceEcCCCCEEEEec
Confidence             88877776543 345566666 6778888888889999999988887766533      23478888899999888764

>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}

Probab=99.78  E-value=1.7e-17  Score=141.75  Aligned_cols=262  Identities=11%  Similarity=0.019  Sum_probs=160.7

Q ss_pred             cCCCCcceeeccccc-----cceEEEEeCCCCCEEEEeeCC---CeEEEEECCCCceeEEeeCCcccEEEEEECCCCCeE
Q 021247           46 RPDDMQLERTNTGHC-----LGVVSVAAHPSGIIAASASLD---SFVRVFDVDTNASIATLEASPSEVWQMQFDPKGTTL  117 (315)
Q Consensus        46 ~~~~~~~~~~~~~h~-----~~v~~~~~~~~g~~l~s~~~d---~~i~~w~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~  117 (315)
                      |..+.+....+..+.     ..+..++|+|+|++++.+..+   ..|++||+.+++..............+.|+|+++.+
T Consensus        16 d~~~g~~~~~l~~~~~~~~~~~~~~~~~SpdG~~l~~~~~~~g~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~spdg~~l   95 (396)
T 3c5m_A           16 DSDTQVKVTRLTPTDIICHRNYFYQKCFTQDGKKLLFAGDFDGNRNYYLLNLETQQAVQLTEGKGDNTFGGFISTDERAF   95 (396)
T ss_dssp             CTTTCCEEEECSCTTSCEECCCTTSCCBCTTSCEEEEEECTTSSCEEEEEETTTTEEEECCCSSCBCTTTCEECTTSSEE
T ss_pred             cCCCCcceEEEecCCCCccceeeecCcCCCCCCEEEEEEecCCCceEEEEECCCCcEEEeecCCCCccccceECCCCCEE
Confidence            455554444443332     236678899999988766443   478899998876544333222222236799999987


Q ss_pred             EEEecCCCeEEEEecCCcceeeeecCCCCCCCCCCcc---CCCCcc-----eEEEEECCCCCEEEEe-----cCCCcEEE
Q 021247          118 AVAGGGSASVKLWDTATWNLIATLSIPRPEGLKPTDK---SSSKKF-----VLSVAWSPDGRRIACG-----SMDGTISV  184 (315)
Q Consensus       118 ~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~-----i~~~~~~~~~~~l~~~-----s~dg~i~i  184 (315)
                      +++ ..++.|.+||+.+++.......+..  ..+...   ......     ...+.|+|+++.++..     ..+..|++
T Consensus        96 ~~~-~~~~~l~~~d~~~~~~~~~~~~~~~--~~~~g~~l~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~~~~~~~~l~~  172 (396)
T 3c5m_A           96 FYV-KNELNLMKVDLETLEEQVIYTVDEE--WKGYGTWVANSDCTKLVGIEILKRDWQPLTSWEKFAEFYHTNPTCRLIK  172 (396)
T ss_dssp             EEE-ETTTEEEEEETTTCCEEEEEECCTT--EEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHHHTCCCEEEEE
T ss_pred             EEE-EcCCcEEEEECCCCCcEEEEecccc--cCCCCCEEEeccCCccccccccccccCCCCcceeeeeeccCCCcceEEE
Confidence            655 4566899999988765544432211  000000   000000     0003568888877654     45678999


Q ss_pred             EEcccceeeeeecCCccceEEEEEcCCCCcEEEEEeCC------CeEEEEeCCCCeeEEEeecc-cccEEEEEEcCCCCe
Q 021247          185 FDVTRAKFLHHLEGHFMPVRSLVYSPVDPRVLFSASDD------THVHMYDAEGKSLVTAMSGH-ASWVLSVDASPDGAA  257 (315)
Q Consensus       185 ~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d------~~i~~wd~~~~~~~~~~~~~-~~~i~~~~~~~~~~~  257 (315)
                      ||+.+++..... .+...+..+.|+|.++..|+..+.+      ..|.+||..++......... ...+..+.|+|+|+.
T Consensus       173 ~d~~~g~~~~~~-~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~spdg~~  251 (396)
T 3c5m_A          173 VDIETGELEVIH-QDTAWLGHPIYRPFDDSTVGFCHEGPHDLVDARMWLVNEDGSNVRKIKEHAEGESCTHEFWIPDGSA  251 (396)
T ss_dssp             EETTTCCEEEEE-EESSCEEEEEEETTEEEEEEEEECSCSSSCSCCCEEEETTSCCCEESSCCCTTEEEEEEEECTTSSC
T ss_pred             EECCCCcEEeec-cCCcccccceECCCCCCEEEEEecCCCCCCCceEEEEECCCCceeEeeccCCCccccceEECCCCCE
Confidence            999887654433 4556788999999444544444332      46899998766543332221 235788999999998


Q ss_pred             EEEEeCC-----CcEEEEecCccceehcccccccceEEEEEee-CCCEEEEEe----------------CCCcEEEeec
Q 021247          258 ITTGSSD-----RTVKLWDLNMRAAMQSMTNHTDQVWGVSFRP-LGGRVVSVS----------------DDKSISLYEY  314 (315)
Q Consensus       258 l~s~~~d-----~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~s~~----------------~d~~i~i~~~  314 (315)
                      |+.++.+     +.|++||+.+++........  ... +.|+| +|++++..+                .+..|.+||.
T Consensus       252 l~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~--~~~-~~~s~~dg~~l~~~~~~~p~~~~~~~~~~~~~~~~i~~~d~  327 (396)
T 3c5m_A          252 MAYVSYFKGQTDRVIYKANPETLENEEVMVMP--PCS-HLMSNFDGSLMVGDGCDAPVDVADADSYNIENDPFLYVLNT  327 (396)
T ss_dssp             EEEEEEETTTCCEEEEEECTTTCCEEEEEECC--SEE-EEEECSSSSEEEEEECCC----------CCCCCCEEEEEET
T ss_pred             EEEEecCCCCccceEEEEECCCCCeEEeeeCC--CCC-CCccCCCCceEEEecCCcceeeccccccccCCCCcEEEEec
Confidence            7766544     44999999876543322111  222 89999 999888755                3467888875

>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}

Probab=99.77  E-value=2e-15  Score=124.09  Aligned_cols=238  Identities=12%  Similarity=0.059  Sum_probs=164.7

Q ss_pred             ccccceEEEEEeecCCCCCcEEEEeeCCCcEEEEcCCCCcceeeccccccceEEEEeCCCCCEEEEeeCCCeEEEEECCC
Q 021247           12 AHEESVWAVTWVPATETRPALLLTGSLDETVKLWRPDDMQLERTNTGHCLGVVSVAAHPSGIIAASASLDSFVRVFDVDT   91 (315)
Q Consensus        12 ~h~~~v~~v~~~~~~~~~~~~l~sgs~d~~v~~w~~~~~~~~~~~~~h~~~v~~~~~~~~g~~l~s~~~d~~i~~w~~~~   91 (315)
                      .+.....+++|.|.++   .+++++..++.|..|+.++.  ...+..+...+..+.++++|.++++...++.|.+||..+
T Consensus        25 ~~~~~~eg~~~d~~g~---~l~~~~~~~~~i~~~~~~~~--~~~~~~~~~~~~~l~~~~dg~l~v~~~~~~~i~~~d~~~   99 (296)
T 3e5z_A           25 DGFTWTEGPVYVPARS---AVIFSDVRQNRTWAWSDDGQ--LSPEMHPSHHQNGHCLNKQGHLIACSHGLRRLERQREPG   99 (296)
T ss_dssp             CCCSSEEEEEEEGGGT---EEEEEEGGGTEEEEEETTSC--EEEEESSCSSEEEEEECTTCCEEEEETTTTEEEEECSTT
T ss_pred             cCCccccCCeEeCCCC---EEEEEeCCCCEEEEEECCCC--eEEEECCCCCcceeeECCCCcEEEEecCCCeEEEEcCCC
Confidence            4456778999999764   36888889999999998876  444555667789999999999988877788999999977


Q ss_pred             CceeEEeeCC----cccEEEEEECCCCCeEEEE----ec-------------CCCeEEEEecCCcceeeeecCCCCCCCC
Q 021247           92 NASIATLEAS----PSEVWQMQFDPKGTTLAVA----GG-------------GSASVKLWDTATWNLIATLSIPRPEGLK  150 (315)
Q Consensus        92 ~~~~~~~~~~----~~~v~~~~~~~~~~~~~~~----~~-------------~d~~i~~~d~~~~~~~~~~~~~~~~~~~  150 (315)
                      ++........    ...+..++++|+|+.+ ++    |.             ..+.|..+|.. ++.. .+.        
T Consensus       100 g~~~~~~~~~~~~~~~~~~~i~~d~~G~l~-vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~-g~~~-~~~--------  168 (296)
T 3e5z_A          100 GEWESIADSFEGKKLNSPNDVCLAPDGSLW-FSDPTYGIDKPEEGYGGEMELPGRWVFRLAPD-GTLS-API--------  168 (296)
T ss_dssp             CCEEEEECEETTEECCCCCCEEECTTSCEE-EEECSHHHHCGGGSSCCCCCSSSCEEEEECTT-SCEE-EEE--------
T ss_pred             CcEEEEeeccCCCCCCCCCCEEECCCCCEE-EECCccccccccccccccccCCCcEEEEECCC-CCEE-Eee--------
Confidence            7654332211    1235678999998744 44    22             12456556554 2222 111        


Q ss_pred             CCccCCCCcceEEEEECCCCCEEEEecCCCcEEEEEcc-ccee---eeeecCCccceEEEEEcCCCCcEEEEEeCCCeEE
Q 021247          151 PTDKSSSKKFVLSVAWSPDGRRIACGSMDGTISVFDVT-RAKF---LHHLEGHFMPVRSLVYSPVDPRVLFSASDDTHVH  226 (315)
Q Consensus       151 ~~~~~~~~~~i~~~~~~~~~~~l~~~s~dg~i~i~d~~-~~~~---~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~  226 (315)
                           ........++|+|+++.+++.+.++.|++||+. .++.   ...+..+...+..+++.+ +++++++.  ++.|.
T Consensus       169 -----~~~~~~~gi~~s~dg~~lv~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~p~~i~~d~-~G~l~v~~--~~~v~  240 (296)
T 3e5z_A          169 -----RDRVKPNGLAFLPSGNLLVSDTGDNATHRYCLNARGETEYQGVHFTVEPGKTDGLRVDA-GGLIWASA--GDGVH  240 (296)
T ss_dssp             -----CCCSSEEEEEECTTSCEEEEETTTTEEEEEEECSSSCEEEEEEEECCSSSCCCSEEEBT-TSCEEEEE--TTEEE
T ss_pred             -----cCCCCCccEEECCCCCEEEEeCCCCeEEEEEECCCCcCcCCCeEeeCCCCCCCeEEECC-CCCEEEEc--CCeEE
Confidence                 112236789999999988888888999999986 4443   222233445567889998 55666655  78899


Q ss_pred             EEeCCCCeeEEEeecccccEEEEEE-cCCCCeEEEEeCCCcEEEEecCccc
Q 021247          227 MYDAEGKSLVTAMSGHASWVLSVDA-SPDGAAITTGSSDRTVKLWDLNMRA  276 (315)
Q Consensus       227 ~wd~~~~~~~~~~~~~~~~i~~~~~-~~~~~~l~s~~~d~~i~iwd~~~~~  276 (315)
                      +||.+ ++.+..+..+.. +.+++| .|+++.|++++.++ +.-++.++++
T Consensus       241 ~~~~~-g~~~~~~~~~~~-~~~~~f~~~d~~~L~v~t~~~-l~~~~~~~~~  288 (296)
T 3e5z_A          241 VLTPD-GDELGRVLTPQT-TSNLCFGGPEGRTLYMTVSTE-FWSIETNVRG  288 (296)
T ss_dssp             EECTT-SCEEEEEECSSC-CCEEEEESTTSCEEEEEETTE-EEEEECSCCB
T ss_pred             EECCC-CCEEEEEECCCC-ceeEEEECCCCCEEEEEcCCe-EEEEEccccc
Confidence            99987 556666666666 889999 58888888888763 4444554433

>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}

Probab=99.76  E-value=8e-16  Score=125.01  Aligned_cols=214  Identities=12%  Similarity=0.061  Sum_probs=163.5

Q ss_pred             CCCEEEEeeCCCeEEEEECCCCceeEEeeCCc-ccEEEEEECCCCCeEEEEecCCCeEEEEecCCcceeeeecCCCCCCC
Q 021247           71 SGIIAASASLDSFVRVFDVDTNASIATLEASP-SEVWQMQFDPKGTTLAVAGGGSASVKLWDTATWNLIATLSIPRPEGL  149 (315)
Q Consensus        71 ~g~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~-~~v~~~~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~  149 (315)
                      .+++|++++.|+.|++||.++++.+..+..+. ..+..+.+.|+|+.++ +  .++.|..||. +++.+..+..+.    
T Consensus         4 ~~~~lv~~~~~~~v~~~d~~tG~~~w~~~~~~~~~~~~~~~~pdG~ilv-s--~~~~V~~~d~-~G~~~W~~~~~~----   75 (276)
T 3no2_A            4 PQHLLVGGSGWNKIAIINKDTKEIVWEYPLEKGWECNSVAATKAGEILF-S--YSKGAKMITR-DGRELWNIAAPA----   75 (276)
T ss_dssp             CCEEEEECTTCSEEEEEETTTTEEEEEEECCTTCCCCEEEECTTSCEEE-E--CBSEEEEECT-TSCEEEEEECCT----
T ss_pred             CCcEEEeeCCCCEEEEEECCCCeEEEEeCCCccCCCcCeEECCCCCEEE-e--CCCCEEEECC-CCCEEEEEcCCC----
Confidence            46889999999999999999999998887665 4678889999998554 3  4778999999 788888876421    


Q ss_pred             CCCccCCCCcceEEEEECCCCCEEEEecC-CCcEEEEEcccceeeeeec------CCccceEEEEEcCCCCcEEEEEeCC
Q 021247          150 KPTDKSSSKKFVLSVAWSPDGRRIACGSM-DGTISVFDVTRAKFLHHLE------GHFMPVRSLVYSPVDPRVLFSASDD  222 (315)
Q Consensus       150 ~~~~~~~~~~~i~~~~~~~~~~~l~~~s~-dg~i~i~d~~~~~~~~~~~------~~~~~v~~~~~~~~~~~~l~s~~~d  222 (315)
                              ...+.++.+.++|+.+++.+. ++.+..+|. .++.+..+.      .+......+.+.+ ++.++++...+
T Consensus        76 --------~~~~~~~~~~~dG~~lv~~~~~~~~v~~vd~-~Gk~l~~~~~~~~~~~~~~~~~~v~~~~-~G~~lv~~~~~  145 (276)
T 3no2_A           76 --------GCEMQTARILPDGNALVAWCGHPSTILEVNM-KGEVLSKTEFETGIERPHAQFRQINKNK-KGNYLVPLFAT  145 (276)
T ss_dssp             --------TCEEEEEEECTTSCEEEEEESTTEEEEEECT-TSCEEEEEEECCSCSSGGGSCSCCEECT-TSCEEEEETTT
T ss_pred             --------CccccccEECCCCCEEEEecCCCCEEEEEeC-CCCEEEEEeccCCCCcccccccCceECC-CCCEEEEecCC
Confidence                    123678899999999998877 788888886 566554432      2222344556666 67789999999


Q ss_pred             CeEEEEeCCCCeeEEEeecccccEEEEEEcCCCCeEEEEeCCCcEEEEecCccceehcccccc------cceEEEEEeeC
Q 021247          223 THVHMYDAEGKSLVTAMSGHASWVLSVDASPDGAAITTGSSDRTVKLWDLNMRAAMQSMTNHT------DQVWGVSFRPL  296 (315)
Q Consensus       223 ~~i~~wd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~------~~v~~~~~s~~  296 (315)
                      +.|..||.+ ++.+-.+... ..+.++...+++.+++++..+++|..+|..+++.+-++..+.      ..+.++...++
T Consensus       146 ~~v~~~d~~-G~~~w~~~~~-~~~~~~~~~~~g~~~v~~~~~~~v~~~d~~tG~~~w~~~~~~~~~~~l~~~~~~~~~~~  223 (276)
T 3no2_A          146 SEVREIAPN-GQLLNSVKLS-GTPFSSAFLDNGDCLVACGDAHCFVQLNLESNRIVRRVNANDIEGVQLFFVAQLFPLQN  223 (276)
T ss_dssp             TEEEEECTT-SCEEEEEECS-SCCCEEEECTTSCEEEECBTTSEEEEECTTTCCEEEEEEGGGSBSCCCSEEEEEEECTT
T ss_pred             CEEEEECCC-CCEEEEEECC-CCccceeEcCCCCEEEEeCCCCeEEEEeCcCCcEEEEecCCCCCCccccccccceEcCC
Confidence            999999998 7776666543 345667888999999999989999999999888765554321      23778888899


Q ss_pred             CCEEEEEe
Q 021247          297 GGRVVSVS  304 (315)
Q Consensus       297 ~~~l~s~~  304 (315)
                      |+.+++..
T Consensus       224 G~i~v~~~  231 (276)
T 3no2_A          224 GGLYICNW  231 (276)
T ss_dssp             SCEEEEEE
T ss_pred             CCEEEEec
Confidence            98777763

>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}

Probab=99.76  E-value=7.3e-14  Score=114.55  Aligned_cols=275  Identities=8%  Similarity=0.051  Sum_probs=188.3

Q ss_pred             ccceEEEEEeecCCCCCcEEEEeeCCCcEEEEcCCCCccee-eccccccceEEEEeCCCCCEEEEeeCCCeEEEEECCCC
Q 021247           14 EESVWAVTWVPATETRPALLLTGSLDETVKLWRPDDMQLER-TNTGHCLGVVSVAAHPSGIIAASASLDSFVRVFDVDTN   92 (315)
Q Consensus        14 ~~~v~~v~~~~~~~~~~~~l~sgs~d~~v~~w~~~~~~~~~-~~~~h~~~v~~~~~~~~g~~l~s~~~d~~i~~w~~~~~   92 (315)
                      ...+.++++.+.+.    +.++...++.|..|+.. .+... ....+...+..+.+.++|.+.++...++.|..+|.. +
T Consensus        19 ~~~p~~i~~d~~g~----l~v~~~~~~~v~~~~~~-~~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~v~~~d~~-g   92 (300)
T 2qc5_A           19 DSGPYGITSSEDGK----VWFTQHKANKISSLDQS-GRIKEFEVPTPDAKVMCLIVSSLGDIWFTENGANKIGKLSKK-G   92 (300)
T ss_dssp             TCCEEEEEECTTSC----EEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECTT-S
T ss_pred             CCCcceeeECCCCC----EEEEcCCCCeEEEECCC-CceEEEECCCCCCcceeEEECCCCCEEEEecCCCeEEEECCC-C
Confidence            45778888877654    55555578999999987 44433 223334578899999999988887778899999987 4


Q ss_pred             ceeEEee--CCcccEEEEEECCCCCeEEEEecCCCeEEEEecCCcceeeeecCCCCCCCCCCccCCCCcceEEEEECCCC
Q 021247           93 ASIATLE--ASPSEVWQMQFDPKGTTLAVAGGGSASVKLWDTATWNLIATLSIPRPEGLKPTDKSSSKKFVLSVAWSPDG  170 (315)
Q Consensus        93 ~~~~~~~--~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~  170 (315)
                      +. ..+.  .....+..+++++++. ++++...++.|..+|.. ++.. .+..+.           ....+..+++.+++
T Consensus        93 ~~-~~~~~~~~~~~~~~i~~~~~g~-l~v~~~~~~~i~~~~~~-g~~~-~~~~~~-----------~~~~~~~i~~d~~g  157 (300)
T 2qc5_A           93 GF-TEYPLPQPDSGPYGITEGLNGD-IWFTQLNGDRIGKLTAD-GTIY-EYDLPN-----------KGSYPAFITLGSDN  157 (300)
T ss_dssp             CE-EEEECSSTTCCEEEEEECSTTC-EEEEETTTTEEEEECTT-SCEE-EEECSS-----------TTCCEEEEEECTTS
T ss_pred             Ce-EEecCCCCCCCCccceECCCCC-EEEEccCCCeEEEECCC-CCEE-EccCCC-----------CCCCceeEEECCCC
Confidence            43 2232  2335688999999887 44566667889999986 4433 222211           11247899999999


Q ss_pred             CEEEEecCCCcEEEEEcccceeeee-ecCCccceEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCeeEEEeecccccEEEE
Q 021247          171 RRIACGSMDGTISVFDVTRAKFLHH-LEGHFMPVRSLVYSPVDPRVLFSASDDTHVHMYDAEGKSLVTAMSGHASWVLSV  249 (315)
Q Consensus       171 ~~l~~~s~dg~i~i~d~~~~~~~~~-~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~i~~~  249 (315)
                      +..++...++.|..+|. +++.... ...+...+..+.+.+ ++.++++....+.|.+||............+...+.++
T Consensus       158 ~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~d~-~g~l~v~~~~~~~i~~~~~~g~~~~~~~~~~~~~~~~i  235 (300)
T 2qc5_A          158 ALWFTENQNNSIGRITN-TGKLEEYPLPTNAAAPVGITSGN-DGALWFVEIMGNKIGRITTTGEISEYDIPTPNARPHAI  235 (300)
T ss_dssp             SEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECT-TSSEEEEETTTTEEEEECTTCCEEEEECSSTTCCEEEE
T ss_pred             CEEEEecCCCeEEEECC-CCcEEEeeCCCCCCCcceEEECC-CCCEEEEccCCCEEEEEcCCCcEEEEECCCCCCCceEE
Confidence            97777777889999998 4544332 223445678999988 56777777777889999984332222233345668899


Q ss_pred             EEcCCCCeEEEEeCCCcEEEEecCccceeh-cccccccceEEEEEeeCCCEEEEEeCCCcEEEeec
Q 021247          250 DASPDGAAITTGSSDRTVKLWDLNMRAAMQ-SMTNHTDQVWGVSFRPLGGRVVSVSDDKSISLYEY  314 (315)
Q Consensus       250 ~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~-~~~~~~~~v~~~~~s~~~~~l~s~~~d~~i~i~~~  314 (315)
                      +++++|++.++...++.|..|+.. +.... .+......+.++++.++|+..++.. . .|..++.
T Consensus       236 ~~d~~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~-~-~i~~~~p  298 (300)
T 2qc5_A          236 TAGKNSEIWFTEWGANQIGRITND-NTIQEYQLQTENAEPHGITFGKDGSVWFALK-C-KIGKLNL  298 (300)
T ss_dssp             EECSTTCEEEEETTTTEEEEECTT-SCEEEEECCSTTCCCCCEEECTTSCEEEECS-S-EEEEEEE
T ss_pred             EECCCCCEEEeccCCCeEEEECCC-CcEEEEECCccCCccceeEeCCCCCEEEEcc-C-ceEEeCC
Confidence            999999877776667899999984 33221 1232345678999999998666655 4 7776664

>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}

Probab=99.75  E-value=1.1e-15  Score=127.68  Aligned_cols=253  Identities=8%  Similarity=-0.029  Sum_probs=177.0

Q ss_pred             cceEEEEEeecCCCCCcEEEEeeCCCcEEEEcCCCCcceeeccccccceEEEEeCCCCCEEEEeeCCCeEEEEECCCCce
Q 021247           15 ESVWAVTWVPATETRPALLLTGSLDETVKLWRPDDMQLERTNTGHCLGVVSVAAHPSGIIAASASLDSFVRVFDVDTNAS   94 (315)
Q Consensus        15 ~~v~~v~~~~~~~~~~~~l~sgs~d~~v~~w~~~~~~~~~~~~~h~~~v~~~~~~~~g~~l~s~~~d~~i~~w~~~~~~~   94 (315)
                      +...++.+..     ..+.++...++.|.+||..+.+....+. ....+..+.+++++.++++...++.|.+||..+++.
T Consensus        44 ~~~~~i~~~~-----~~lyv~~~~~~~v~viD~~t~~~~~~i~-~~~~p~~i~~~~~g~lyv~~~~~~~v~~iD~~t~~~  117 (328)
T 3dsm_A           44 DVAQSMVIRD-----GIGWIVVNNSHVIFAIDINTFKEVGRIT-GFTSPRYIHFLSDEKAYVTQIWDYRIFIINPKTYEI  117 (328)
T ss_dssp             SCEEEEEEET-----TEEEEEEGGGTEEEEEETTTCCEEEEEE-CCSSEEEEEEEETTEEEEEEBSCSEEEEEETTTTEE
T ss_pred             ccceEEEEEC-----CEEEEEEcCCCEEEEEECcccEEEEEcC-CCCCCcEEEEeCCCeEEEEECCCCeEEEEECCCCeE
Confidence            3456676632     1255666678999999999988877664 235678899988887666665899999999999887


Q ss_pred             eEEeeCCc-----ccEEEEEECCCCCeEEEEec-CCCeEEEEecCCcceeeeecCCCCCCCCCCccCCCCcceEEEEECC
Q 021247           95 IATLEASP-----SEVWQMQFDPKGTTLAVAGG-GSASVKLWDTATWNLIATLSIPRPEGLKPTDKSSSKKFVLSVAWSP  168 (315)
Q Consensus        95 ~~~~~~~~-----~~v~~~~~~~~~~~~~~~~~-~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~  168 (315)
                      ...+....     .....+++  ++..++++.. .+++|.++|..+++.+..+.....              ...++++|
T Consensus       118 ~~~i~~g~~~~~~~~p~~i~~--~~~~lyv~~~~~~~~v~viD~~t~~~~~~i~~g~~--------------p~~i~~~~  181 (328)
T 3dsm_A          118 TGYIECPDMDMESGSTEQMVQ--YGKYVYVNCWSYQNRILKIDTETDKVVDELTIGIQ--------------PTSLVMDK  181 (328)
T ss_dssp             EEEEECTTCCTTTCBCCCEEE--ETTEEEEEECTTCCEEEEEETTTTEEEEEEECSSC--------------BCCCEECT
T ss_pred             EEEEEcCCccccCCCcceEEE--ECCEEEEEcCCCCCEEEEEECCCCeEEEEEEcCCC--------------ccceEEcC
Confidence            76665433     03345566  3555666654 488999999999888776643211              34678899


Q ss_pred             CCCEEEEecCC----------CcEEEEEcccceeeeeecCC-ccceEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCeeEE
Q 021247          169 DGRRIACGSMD----------GTISVFDVTRAKFLHHLEGH-FMPVRSLVYSPVDPRVLFSASDDTHVHMYDAEGKSLVT  237 (315)
Q Consensus       169 ~~~~l~~~s~d----------g~i~i~d~~~~~~~~~~~~~-~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~  237 (315)
                      +|++++++..+          +.|.++|..+++....+... ......++|+|++. .|+.+..  .|.+||..++++..
T Consensus       182 dG~l~v~~~~~~~~~~~~~~~~~v~~id~~t~~v~~~~~~~~g~~p~~la~~~d~~-~lyv~~~--~v~~~d~~t~~~~~  258 (328)
T 3dsm_A          182 YNKMWTITDGGYEGSPYGYEAPSLYRIDAETFTVEKQFKFKLGDWPSEVQLNGTRD-TLYWINN--DIWRMPVEADRVPV  258 (328)
T ss_dssp             TSEEEEEBCCBCTTCSSCBCCCEEEEEETTTTEEEEEEECCTTCCCEEEEECTTSC-EEEEESS--SEEEEETTCSSCCS
T ss_pred             CCCEEEEECCCccCCccccCCceEEEEECCCCeEEEEEecCCCCCceeEEEecCCC-EEEEEcc--EEEEEECCCCceee
Confidence            99877776554          78999999988877665432 23578999999554 4544433  89999998776532


Q ss_pred             E--eecccccEEEEEEcC-CCCeEEEE----eCCCcEEEEecCccceehcccccccceEEEEEe
Q 021247          238 A--MSGHASWVLSVDASP-DGAAITTG----SSDRTVKLWDLNMRAAMQSMTNHTDQVWGVSFR  294 (315)
Q Consensus       238 ~--~~~~~~~i~~~~~~~-~~~~l~s~----~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s  294 (315)
                      .  +..+...+..++++| ++.+.++.    ..++.|.+||.+ ++.+.++.. ......++|-
T Consensus       259 ~~~~~~~~~~p~gi~vdp~~g~lyva~~~~y~~~~~V~v~d~~-g~~~~~i~~-G~~P~~~~~~  320 (328)
T 3dsm_A          259 RPFLEFRDTKYYGLTVNPNNGEVYVADAIDYQQQGIVYRYSPQ-GKLIDEFYV-GIIPGAFCWK  320 (328)
T ss_dssp             SCSBCCCSSCEEEEEECTTTCCEEEEECTTSSSEEEEEEECTT-CCEEEEEEE-EESEEEEEEE
T ss_pred             eeeecCCCCceEEEEEcCCCCeEEEEcccccccCCEEEEECCC-CCEEEEEEe-ccCcceEEEe
Confidence            1  121245688999999 56666666    578899999998 777776643 3344556553

>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*

Probab=99.75  E-value=1.5e-15  Score=139.81  Aligned_cols=247  Identities=11%  Similarity=0.010  Sum_probs=169.4

Q ss_pred             hhccccceEEEEEeecCCCCCcEEEEeeC-CC----cEEEEcCCCCcceeeccccccceEEEEeCCCCCEEEEeeCCCe-
Q 021247           10 ENAHEESVWAVTWVPATETRPALLLTGSL-DE----TVKLWRPDDMQLERTNTGHCLGVVSVAAHPSGIIAASASLDSF-   83 (315)
Q Consensus        10 ~~~h~~~v~~v~~~~~~~~~~~~l~sgs~-d~----~v~~w~~~~~~~~~~~~~h~~~v~~~~~~~~g~~l~s~~~d~~-   83 (315)
                      ..+|+..+..++|+|+++    .|+.++. +|    .|++||.++++.......+ ..+..+.|+|||+.|+.++.++. 
T Consensus       120 ~~~~~~~~~~~~~SPDg~----~la~~~~~~G~~~~~i~v~d~~tg~~~~~~~~~-~~~~~~~wspDg~~l~~~~~~~~~  194 (710)
T 2xdw_A          120 SDDGTVALRGYAFSEDGE----YFAYGLSASGSDWVTIKFMKVDGAKELPDVLER-VKFSCMAWTHDGKGMFYNAYPQQD  194 (710)
T ss_dssp             CTTSCEEEEEEEECTTSS----EEEEEEEETTCSCEEEEEEETTTTEEEEEEEEE-ECSCCEEECTTSSEEEEEECCCCS
T ss_pred             ccCCCEEEEEEEECCCCC----EEEEEEcCCCCceEEEEEEECCCCCCCcccccC-cccceEEEEeCCCEEEEEEECCcc
Confidence            345666799999999876    4555443 33    8999999888765532222 23667999999999998887766 


Q ss_pred             ---------------EEEEECCCCce--eEEeeC--CcccEEEEEECCCCCeEEEEecC----CCeEEEEecCC------
Q 021247           84 ---------------VRVFDVDTNAS--IATLEA--SPSEVWQMQFDPKGTTLAVAGGG----SASVKLWDTAT------  134 (315)
Q Consensus        84 ---------------i~~w~~~~~~~--~~~~~~--~~~~v~~~~~~~~~~~~~~~~~~----d~~i~~~d~~~------  134 (315)
                                     |++|++.+++.  ...+..  +...+..+.|+|+++.++++...    +..|.+||+.+      
T Consensus       195 ~~~~~~~~~~~~~~~v~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~  274 (710)
T 2xdw_A          195 GKSDGTETSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSDDGRYVLLSIREGCDPVNRLWYCDLQQESNGIT  274 (710)
T ss_dssp             SCCSSSCCCCCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECSSSSCCEEEEEEGGGSSSSSC
T ss_pred             ccccccccccCCCCEEEEEECCCCcccceEEeccCCCCeEEEEEEEcCCCCEEEEEEEccCCCccEEEEEECcccccccC
Confidence                           99999988763  223232  34457889999999988776542    57899999875      


Q ss_pred             cc-eeeeecCCCCCCCCCCccCCCCcceEEEEECCCCCEEEEecCC----CcEEEEEcccce--eeeeecCCcc--ceEE
Q 021247          135 WN-LIATLSIPRPEGLKPTDKSSSKKFVLSVAWSPDGRRIACGSMD----GTISVFDVTRAK--FLHHLEGHFM--PVRS  205 (315)
Q Consensus       135 ~~-~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~s~d----g~i~i~d~~~~~--~~~~~~~~~~--~v~~  205 (315)
                      ++ ....+..+             ...+. -.|+|+|+.|+..+..    ..|.+||+.++.  ....+..|..  .+..
T Consensus       275 ~~~~~~~l~~~-------------~~~~~-~~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~  340 (710)
T 2xdw_A          275 GILKWVKLIDN-------------FEGEY-DYVTNEGTVFTFKTNRHSPNYRLINIDFTDPEESKWKVLVPEHEKDVLEW  340 (710)
T ss_dssp             SSCCCEEEECS-------------SSSCE-EEEEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSSCEEEE
T ss_pred             CccceEEeeCC-------------CCcEE-EEEeccCCEEEEEECCCCCCCEEEEEeCCCCCcccceeccCCCCCCeEEE
Confidence            32 12222211             11122 2478888887765543    369999997764  2344444433  6778


Q ss_pred             EEEcCCCCcEEEEEeCCCe--EEEEeCCCCeeEEEeecccccEEEEEEcCCCCeEE-EEe---CCCcEEEEecCccc
Q 021247          206 LVYSPVDPRVLFSASDDTH--VHMYDAEGKSLVTAMSGHASWVLSVDASPDGAAIT-TGS---SDRTVKLWDLNMRA  276 (315)
Q Consensus       206 ~~~~~~~~~~l~s~~~d~~--i~~wd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~-s~~---~d~~i~iwd~~~~~  276 (315)
                      +.|++ ++.++++...++.  |.+||..+++.+..+..+.+.+..+.++|++..++ +.+   ..++|..||+.+++
T Consensus       341 ~~~~~-~~~lv~~~~~~g~~~l~~~~~~~g~~~~~l~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~tg~  416 (710)
T 2xdw_A          341 VACVR-SNFLVLCYLHDVKNTLQLHDLATGALLKIFPLEVGSVVGYSGQKKDTEIFYQFTSFLSPGIIYHCDLTKEE  416 (710)
T ss_dssp             EEEET-TTEEEEEEEETTEEEEEEEETTTCCEEEEECCCSSEEEEEECCTTCSEEEEEEECSSCCCEEEEEETTSSS
T ss_pred             EEEEc-CCEEEEEEEECCEEEEEEEECCCCCEEEecCCCCceEEEEecCCCCCEEEEEEeCCCCCCEEEEEECCCCc
Confidence            88885 6778888888874  66778766666677777777888999999887554 322   34789999998765

>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...

Probab=99.75  E-value=7.9e-15  Score=121.35  Aligned_cols=240  Identities=11%  Similarity=0.117  Sum_probs=165.1

Q ss_pred             cceEEEEeCCCCCEEEE-------eeCCCeEEEEECCCCceeEEee----CCcccEEEEEECCC-CCeEEEEecCCCeEE
Q 021247           61 LGVVSVAAHPSGIIAAS-------ASLDSFVRVFDVDTNASIATLE----ASPSEVWQMQFDPK-GTTLAVAGGGSASVK  128 (315)
Q Consensus        61 ~~v~~~~~~~~g~~l~s-------~~~d~~i~~w~~~~~~~~~~~~----~~~~~v~~~~~~~~-~~~~~~~~~~d~~i~  128 (315)
                      .....+.++++|.++++       ...++.|.+||..+++......    .+...+..+.++++ ++ ++++.. ...|.
T Consensus        18 ~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~~~~~g~-l~v~~~-~~~l~   95 (314)
T 1pjx_A           18 PGAEGPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKPEVNGYGGIPAGCQCDRDANQ-LFVADM-RLGLL   95 (314)
T ss_dssp             TTCEEEEECTTSCEEEEETTCEETTEECCEEEEECTTTCCEEEEECCEETTEECCEEEEEECSSSSE-EEEEET-TTEEE
T ss_pred             CCccCceECCCCCEEEEEeccccCCCCCCEEEEEeCCCCcEEEEEecccCCCCCCCceEEEecCCCc-EEEEEC-CCCEE
Confidence            35678899999998888       6778999999987776533221    13356889999998 55 445443 34788


Q ss_pred             EEecCCcceeee-ecCCCCCCCCCCccCCCCcceEEEEECCCCCEEEEecCC---------------CcEEEEEccccee
Q 021247          129 LWDTATWNLIAT-LSIPRPEGLKPTDKSSSKKFVLSVAWSPDGRRIACGSMD---------------GTISVFDVTRAKF  192 (315)
Q Consensus       129 ~~d~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~s~d---------------g~i~i~d~~~~~~  192 (315)
                      +||.. ++.... ....  .       ......+..++++++|+..++...+               +.|..+|.. ++.
T Consensus        96 ~~d~~-g~~~~~~~~~~--~-------~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-g~~  164 (314)
T 1pjx_A           96 VVQTD-GTFEEIAKKDS--E-------GRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTD-GQM  164 (314)
T ss_dssp             EEETT-SCEEECCSBCT--T-------SCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTT-SCE
T ss_pred             EEeCC-CCEEEEEeccC--C-------CccccCCcCEEECCCCCEEEEecCcccccccccccccCCCCeEEEECCC-CCE
Confidence            99987 554322 1110  0       0112347789999999887776655               578888865 443


Q ss_pred             eeeecCCccceEEEEEc----CCCCcEEEEEeCCCeEEEEeCC-CCee-----EEEeeccc-ccEEEEEEcCCCCeEEEE
Q 021247          193 LHHLEGHFMPVRSLVYS----PVDPRVLFSASDDTHVHMYDAE-GKSL-----VTAMSGHA-SWVLSVDASPDGAAITTG  261 (315)
Q Consensus       193 ~~~~~~~~~~v~~~~~~----~~~~~~l~s~~~d~~i~~wd~~-~~~~-----~~~~~~~~-~~i~~~~~~~~~~~l~s~  261 (315)
                      .. +..+......++++    |++..++++...++.|.+||.+ .+..     ...+..+. ..+..++++++|+++++.
T Consensus       165 ~~-~~~~~~~~~~i~~~~~~d~dg~~l~v~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~i~~d~~G~l~v~~  243 (314)
T 1pjx_A          165 IQ-VDTAFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDEDNNLLVAN  243 (314)
T ss_dssp             EE-EEEEESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBTTCCEEEEE
T ss_pred             EE-eccCCCCcceEEEecccCCCCCEEEEEECCCCeEEEEECCCCCccccceEEEECCCCCCCCCCceEECCCCCEEEEE
Confidence            32 22233456788898    8443455666678999999975 3332     22233333 567889999999988888


Q ss_pred             eCCCcEEEEecCccceehcccccccceEEEEEeeCCCEE-EEEeCCCcEEEeec
Q 021247          262 SSDRTVKLWDLNMRAAMQSMTNHTDQVWGVSFRPLGGRV-VSVSDDKSISLYEY  314 (315)
Q Consensus       262 ~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l-~s~~~d~~i~i~~~  314 (315)
                      ..++.|.+||.++++.+..+..+...+.+++|+|+|+.| ++...++.|..|+.
T Consensus       244 ~~~~~i~~~d~~~g~~~~~~~~~~~~~~~i~~~~dg~~l~v~~~~~~~l~~~~~  297 (314)
T 1pjx_A          244 WGSSHIEVFGPDGGQPKMRIRCPFEKPSNLHFKPQTKTIFVTEHENNAVWKFEW  297 (314)
T ss_dssp             ETTTEEEEECTTCBSCSEEEECSSSCEEEEEECTTSSEEEEEETTTTEEEEEEC
T ss_pred             cCCCEEEEEcCCCCcEeEEEeCCCCCceeEEECCCCCEEEEEeCCCCeEEEEeC
Confidence            788999999998777666666666789999999999955 45556688988875

>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A

Probab=99.74  E-value=2.8e-14  Score=119.11  Aligned_cols=231  Identities=11%  Similarity=0.107  Sum_probs=157.1

Q ss_pred             ccccceEEEEEeecCCCCCcEEEEeeCCCcEEEEcCCCCcceeeccccccceEEEEeCCCCCEEEEeeCC----CeEEEE
Q 021247           12 AHEESVWAVTWVPATETRPALLLTGSLDETVKLWRPDDMQLERTNTGHCLGVVSVAAHPSGIIAASASLD----SFVRVF   87 (315)
Q Consensus        12 ~h~~~v~~v~~~~~~~~~~~~l~sgs~d~~v~~w~~~~~~~~~~~~~h~~~v~~~~~~~~g~~l~s~~~d----~~i~~w   87 (315)
                      .+...+.+++|.|.+.    +++++..++.|.+|+.++.+.......+...+.++.++++|.++++...+    +.|.+|
T Consensus        42 ~~~~~~~~~~~~~~g~----l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~i~~~~dg~l~v~~~~~~~~~~~i~~~  117 (333)
T 2dg1_A           42 KKGLQLEGLNFDRQGQ----LFLLDVFEGNIFKINPETKEIKRPFVSHKANPAAIKIHKDGRLFVCYLGDFKSTGGIFAA  117 (333)
T ss_dssp             SSCCCEEEEEECTTSC----EEEEETTTCEEEEECTTTCCEEEEEECSSSSEEEEEECTTSCEEEEECTTSSSCCEEEEE
T ss_pred             ccCccccCcEECCCCC----EEEEECCCCEEEEEeCCCCcEEEEeeCCCCCcceEEECCCCcEEEEeCCCCCCCceEEEE
Confidence            3445678999987653    67788889999999998776655443455679999999999988877766    689999


Q ss_pred             ECCCCceeEEee--CCcccEEEEEECCCCCeEEEEecC------CCeEEEEecCCcceeeeecCCCCCCCCCCccCCCCc
Q 021247           88 DVDTNASIATLE--ASPSEVWQMQFDPKGTTLAVAGGG------SASVKLWDTATWNLIATLSIPRPEGLKPTDKSSSKK  159 (315)
Q Consensus        88 ~~~~~~~~~~~~--~~~~~v~~~~~~~~~~~~~~~~~~------d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~  159 (315)
                      |..++.....+.  .....+..+.++|+++.+ ++...      .+.|..+|..+++......              ...
T Consensus       118 d~~~~~~~~~~~~~~~~~~~~~i~~d~~g~l~-v~~~~~~~~~~~~~l~~~~~~~~~~~~~~~--------------~~~  182 (333)
T 2dg1_A          118 TENGDNLQDIIEDLSTAYCIDDMVFDSKGGFY-FTDFRGYSTNPLGGVYYVSPDFRTVTPIIQ--------------NIS  182 (333)
T ss_dssp             CTTSCSCEEEECSSSSCCCEEEEEECTTSCEE-EEECCCBTTBCCEEEEEECTTSCCEEEEEE--------------EES
T ss_pred             eCCCCEEEEEEccCccCCcccceEECCCCCEE-EEeccccccCCCceEEEEeCCCCEEEEeec--------------CCC
Confidence            998776543332  233568899999998754 44332      3456666655433322110              011


Q ss_pred             ceEEEEECCCCCEE-EEecCCCcEEEEEccc-ceeee--------eecCCccceEEEEEcCCCCcEEEEEeCCCeEEEEe
Q 021247          160 FVLSVAWSPDGRRI-ACGSMDGTISVFDVTR-AKFLH--------HLEGHFMPVRSLVYSPVDPRVLFSASDDTHVHMYD  229 (315)
Q Consensus       160 ~i~~~~~~~~~~~l-~~~s~dg~i~i~d~~~-~~~~~--------~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd  229 (315)
                      .+..++|+|+++.| ++.+.++.|.+||+.+ +....        .+.++ ..+..+.+++ +++++++...++.|.+||
T Consensus       183 ~~~~i~~~~dg~~l~v~~~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~-~~~~~i~~d~-~G~l~v~~~~~~~v~~~d  260 (333)
T 2dg1_A          183 VANGIALSTDEKVLWVTETTANRLHRIALEDDGVTIQPFGATIPYYFTGH-EGPDSCCIDS-DDNLYVAMYGQGRVLVFN  260 (333)
T ss_dssp             SEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSSSEEEEEEEEEEECCSS-SEEEEEEEBT-TCCEEEEEETTTEEEEEC
T ss_pred             cccceEECCCCCEEEEEeCCCCeEEEEEecCCCcCcccccceEEEecCCC-CCCCceEECC-CCCEEEEEcCCCEEEEEC
Confidence            26789999999865 4556678999999853 22221        11222 3567899998 567777777889999999


Q ss_pred             CCCCeeEEEeecccc------cEEEEEEcCCCCeEEEEeCC
Q 021247          230 AEGKSLVTAMSGHAS------WVLSVDASPDGAAITTGSSD  264 (315)
Q Consensus       230 ~~~~~~~~~~~~~~~------~i~~~~~~~~~~~l~s~~~d  264 (315)
                      .+ ++.+..+..+..      .+.+++|+|+++.|+.++.+
T Consensus       261 ~~-g~~~~~~~~~~~~~g~~~~~~~~~~~~dg~~L~v~~~~  300 (333)
T 2dg1_A          261 KR-GYPIGQILIPGRDEGHMLRSTHPQFIPGTNQLIICSND  300 (333)
T ss_dssp             TT-SCEEEEEECTTGGGTCSCBCCEEEECTTSCEEEEEEEC
T ss_pred             CC-CCEEEEEEcCCCccccccCcceEEECCCCCEEEEEeCc
Confidence            85 444555543332      68899999998766655554

>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}

Probab=99.74  E-value=1.3e-15  Score=128.02  Aligned_cols=216  Identities=14%  Similarity=0.191  Sum_probs=147.7

Q ss_pred             ceEEEEeCCCCCEEEEee---------CCCeEEEEECCCCceeEEeeCCcccEEEEEECCCCCeEEEEecCC--C--eEE
Q 021247           62 GVVSVAAHPSGIIAASAS---------LDSFVRVFDVDTNASIATLEASPSEVWQMQFDPKGTTLAVAGGGS--A--SVK  128 (315)
Q Consensus        62 ~v~~~~~~~~g~~l~s~~---------~d~~i~~w~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d--~--~i~  128 (315)
                      .+....+  +|..++...         .++.|++||+.+++... +    ..+..++|+|+|+.+++.....  +  .|.
T Consensus        16 ~~~~~~~--dG~~i~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~-l----~~~~~~~~SpDg~~la~~~~~~~~~~~~l~   88 (347)
T 2gop_A           16 YLSDPRT--KGELVAYVLTKANLKDNKYENTIVIENLKNNARRF-I----ENATMPRISPDGKKIAFMRANEEKKVSEIW   88 (347)
T ss_dssp             EEEEEEE--ETTEEEEEEEEEETTTTEEEEEEEEEETTTCCEEE-E----ESCEEEEECTTSSEEEEEEEETTTTEEEEE
T ss_pred             EcccceE--CCcEEEEEEeecCcccCCccceEEEEeCCCCceEE-c----ccCCCeEECCCCCEEEEEEeccCCCcceEE
Confidence            3455556  777766432         26679999998876533 3    4577899999999887765432  3  478


Q ss_pred             EEecCCcceeeeecCCCCCCCCCCccCCCCcceEEEEECCCCCEEEEecCC---------------------------Cc
Q 021247          129 LWDTATWNLIATLSIPRPEGLKPTDKSSSKKFVLSVAWSPDGRRIACGSMD---------------------------GT  181 (315)
Q Consensus       129 ~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~s~d---------------------------g~  181 (315)
                      +||+.+++.......              .. +..++|+|+|+.|+.++.+                           ..
T Consensus        89 ~~~~~~g~~~~l~~~--------------~~-~~~~~wspdg~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~  153 (347)
T 2gop_A           89 VADLETLSSKKILEA--------------KN-IRSLEWNEDSRKLLIVGFKRREDEDFIFEDDVPAWFDDLGFFDGEKTT  153 (347)
T ss_dssp             EEETTTTEEEEEEEE--------------SE-EEEEEECTTSSEEEEEEECCCC---------CCCC---------CEEE
T ss_pred             EEECCCCceEEEEcC--------------CC-ccceeECCCCCEEEEEEccCCCcCCcEEEcccceeecCcccccCccce
Confidence            888877654433211              12 7789999999988877632                           57


Q ss_pred             EEEEEcccceeeeeecCCccceEEEEEcCCCCcEEEEEeCC---------CeEEEEeCCCCeeEEEeecccccEEEEEEc
Q 021247          182 ISVFDVTRAKFLHHLEGHFMPVRSLVYSPVDPRVLFSASDD---------THVHMYDAEGKSLVTAMSGHASWVLSVDAS  252 (315)
Q Consensus       182 i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d---------~~i~~wd~~~~~~~~~~~~~~~~i~~~~~~  252 (315)
                      |++||+.+++.+..+.. . .+..+.|+|+ + +++++..+         ..|.++|  +++. ..+..+ ..+..+  +
T Consensus       154 l~~~d~~~~~~~~~l~~-~-~~~~~~~spd-g-~~~~~~~~~~~~~~~~~~~l~~~d--~~~~-~~l~~~-~~~~~~--s  223 (347)
T 2gop_A          154 FWIFDTESEEVIEEFEK-P-RFSSGIWHRD-K-IVVNVPHREIIPQYFKFWDIYIWE--DGKE-EKMFEK-VSFYAV--D  223 (347)
T ss_dssp             EEEEETTTTEEEEEEEE-E-TTCEEEEETT-E-EEEEEECCCSSCCSSCCEEEEEEE--TTEE-EEEEEE-ESEEEE--E
T ss_pred             EEEEECCCCeEEeeecC-C-CcccccCCCC-e-EEEEEecccccccccccccEEEeC--CCce-EEeccC-cceeeE--C
Confidence            99999988876444444 3 6788999984 4 77776543         2456666  4443 333334 555554  9


Q ss_pred             CCCCeEEEEeCC--------CcEEEEecCccceehcccccccceEE-EEEeeCCCEEEEEeCCCcEEEeec
Q 021247          253 PDGAAITTGSSD--------RTVKLWDLNMRAAMQSMTNHTDQVWG-VSFRPLGGRVVSVSDDKSISLYEY  314 (315)
Q Consensus       253 ~~~~~l~s~~~d--------~~i~iwd~~~~~~~~~~~~~~~~v~~-~~~s~~~~~l~s~~~d~~i~i~~~  314 (315)
                      |+|+.|+.++.+        ..|.+||  .++.......+...+.. +.|+ ++ .+++++.++.++|| +
T Consensus       224 pdg~~l~~~~~~~~~~~~~~~~l~~~d--~~~~~~l~~~~~~~~~~~~~~s-dg-~~~~~~~~~~~~l~-~  289 (347)
T 2gop_A          224 SDGERILLYGKPEKKYMSEHNKLYIYD--GKEVMGILDEVDRGVGQAKIKD-GK-VYFTLFEEGSVNLY-I  289 (347)
T ss_dssp             ECSSCEEEEECCSSSCCCSSCEEEEEC--SSCEEESSTTCCSEEEEEEEET-TE-EEEEEEETTEEEEE-E
T ss_pred             CCCCEEEEEEccccCCccccceEEEEC--CCceEeccccCCcccCCccEEc-Cc-EEEEEecCCcEEEE-E
Confidence            999988877754        3677888  44444444556677886 8999 88 88899999999999 6

>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}

Probab=99.73  E-value=7.2e-16  Score=141.54  Aligned_cols=241  Identities=12%  Similarity=0.031  Sum_probs=159.5

Q ss_pred             ccccceEEEEeCCCCCEEE-----EeeCCCeEEEEECCCCcee-EE-eeCCcccEEEEEECCCCCeEEEEecCCCe----
Q 021247           58 GHCLGVVSVAAHPSGIIAA-----SASLDSFVRVFDVDTNASI-AT-LEASPSEVWQMQFDPKGTTLAVAGGGSAS----  126 (315)
Q Consensus        58 ~h~~~v~~~~~~~~g~~l~-----s~~~d~~i~~w~~~~~~~~-~~-~~~~~~~v~~~~~~~~~~~~~~~~~~d~~----  126 (315)
                      +|...+..+.|+|+|++|+     .|+.+..|++||+.+++.+ .. +..  .....++|+|+++.++++. .+..    
T Consensus       118 ~~~~~~~~~~~SPDG~~la~~~~~~G~~~~~i~v~dl~tg~~~~~~~~~~--~~~~~~~wspDg~~l~~~~-~d~~~~~~  194 (695)
T 2bkl_A          118 DGTVSLGTWAVSWDGKKVAFAQKPNAADEAVLHVIDVDSGEWSKVDVIEG--GKYATPKWTPDSKGFYYEW-LPTDPSIK  194 (695)
T ss_dssp             SSCEEEEEEEECTTSSEEEEEEEETTCSCCEEEEEETTTCCBCSSCCBSC--CTTCCCEECTTSSEEEEEE-CCCCTTSC
T ss_pred             CCCEEEEEEEECCCCCEEEEEECCCCCceEEEEEEECCCCCCcCCcccCc--ccccceEEecCCCEEEEEE-ecCCCCCc
Confidence            4666789999999999988     4555678999999998764 11 111  1125789999999877654 3333    


Q ss_pred             ---------EEEEecCCcceeeeecCCCCCCCCCCccCCCCcceEEEEECCCCCEEEEecCCC----cEEEEEcccceee
Q 021247          127 ---------VKLWDTATWNLIATLSIPRPEGLKPTDKSSSKKFVLSVAWSPDGRRIACGSMDG----TISVFDVTRAKFL  193 (315)
Q Consensus       127 ---------i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~s~dg----~i~i~d~~~~~~~  193 (315)
                               |++|++.+.+....+....         ..+...+..+.|+|+|++|+..+.++    .|+++|..++.. 
T Consensus       195 ~~~~~~~~~v~~~~l~t~~~~~~lv~~~---------~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~l~~~~~~~~~~-  264 (695)
T 2bkl_A          195 VDERPGYTTIRYHTLGTEPSKDTVVHER---------TGDPTTFLQSDLSRDGKYLFVYILRGWSENDVYWKRPGEKDF-  264 (695)
T ss_dssp             GGGGGGGCEEEEEETTSCGGGCEEEECC---------CCCTTCEEEEEECTTSCCEEEEEEETTTEEEEEEECTTCSSC-
T ss_pred             cccCCCCCEEEEEECCCCchhceEEEec---------CCCCEEEEEEEECCCCCEEEEEEeCCCCceEEEEEcCCCCce-
Confidence                     9999998755211111110         11223578999999999998776555    677887655443 


Q ss_pred             eeecCCccceEEEEEcCCCCcEEEEEe---CCCeEEEEeCCCCee--EEEeec-c-cccEEEEEEcCCCCeEEEEeCCCc
Q 021247          194 HHLEGHFMPVRSLVYSPVDPRVLFSAS---DDTHVHMYDAEGKSL--VTAMSG-H-ASWVLSVDASPDGAAITTGSSDRT  266 (315)
Q Consensus       194 ~~~~~~~~~v~~~~~~~~~~~~l~s~~---~d~~i~~wd~~~~~~--~~~~~~-~-~~~i~~~~~~~~~~~l~s~~~d~~  266 (315)
                      ..+..+...+....+ +++. +++...   .++.|.+||+.++..  ...+.. + ...+..++++ ++.++++...|+.
T Consensus       265 ~~l~~~~~~~~~~~~-~~g~-l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~l~~~~~~-~~~lv~~~~~dg~  341 (695)
T 2bkl_A          265 RLLVKGVGAKYEVHA-WKDR-FYVLTDEGAPRQRVFEVDPAKPARASWKEIVPEDSSASLLSVSIV-GGHLSLEYLKDAT  341 (695)
T ss_dssp             EEEEECSSCCEEEEE-ETTE-EEEEECTTCTTCEEEEEBTTBCSGGGCEEEECCCSSCEEEEEEEE-TTEEEEEEEETTE
T ss_pred             EEeecCCCceEEEEe-cCCc-EEEEECCCCCCCEEEEEeCCCCCccCCeEEecCCCCCeEEEEEEE-CCEEEEEEEECCE
Confidence            334444445555556 4344 555554   258899999876542  223333 3 4457788888 6778899999999


Q ss_pred             EEEEecC-ccceehccccc-ccceEEEEEeeCCCEEEE----EeCCCcEEEeec
Q 021247          267 VKLWDLN-MRAAMQSMTNH-TDQVWGVSFRPLGGRVVS----VSDDKSISLYEY  314 (315)
Q Consensus       267 i~iwd~~-~~~~~~~~~~~-~~~v~~~~~s~~~~~l~s----~~~d~~i~i~~~  314 (315)
                      .++|.++ .++....+..+ ...+..++++|++..++.    ....++|.+||+
T Consensus       342 ~~l~~~~~~g~~~~~l~~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~v~~~d~  395 (695)
T 2bkl_A          342 SEVRVATLKGKPVRTVQLPGVGAASNLMGLEDLDDAYYVFTSFTTPRQIYKTSV  395 (695)
T ss_dssp             EEEEEEETTCCEEEECCCSSSSEECCCBSCTTCSEEEEEEEETTEEEEEEEEET
T ss_pred             EEEEEEeCCCCeeEEecCCCCeEEEEeecCCCCCEEEEEEcCCCCCCEEEEEEC
Confidence            8888665 34444555544 556778899999987762    233478888885

>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}

Probab=99.72  E-value=3e-14  Score=122.32  Aligned_cols=240  Identities=14%  Similarity=0.107  Sum_probs=166.5

Q ss_pred             ceEEEEeCCCCCEEEEeeCCCeEEEEECCCCceeEEeeCCcccEEEEEECCCCCeEEEEecCCC-eEEEEecCCcceeee
Q 021247           62 GVVSVAAHPSGIIAASASLDSFVRVFDVDTNASIATLEASPSEVWQMQFDPKGTTLAVAGGGSA-SVKLWDTATWNLIAT  140 (315)
Q Consensus        62 ~v~~~~~~~~g~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~-~i~~~d~~~~~~~~~  140 (315)
                      ....++++++|.++++...++.|++||..++........... .. ++|+|+++.++++....+ .|.++|.........
T Consensus       132 ~P~~la~d~~g~lyv~d~~~~~I~~id~~~g~~~~~~~~~~~-~~-ia~~~~g~~l~~~d~~~~~~I~~~d~~~~~~~~~  209 (409)
T 3hrp_A          132 YMWGIAAVGNNTVLAYQRDDPRVRLISVDDNKVTTVHPGFKG-GK-PAVTKDKQRVYSIGWEGTHTVYVYMKASGWAPTR  209 (409)
T ss_dssp             CEEEEEECSTTEEEEEETTTTEEEEEETTTTEEEEEEETCCB-CB-CEECTTSSEEEEEBSSTTCEEEEEEGGGTTCEEE
T ss_pred             CceEEEEeCCCCEEEEecCCCcEEEEECCCCEEEEeeccCCC-Cc-eeEecCCCcEEEEecCCCceEEEEEcCCCceeEE
Confidence            577899999999888888889999999988766555444332 33 899999987765544333 888888765443322


Q ss_pred             ecCCCCCCCCCCccCCCCcceEEEEECCCCCEEEEecCCCcEEEEEcccceeeee----ecCCccce-E-EEEEcCCCCc
Q 021247          141 LSIPRPEGLKPTDKSSSKKFVLSVAWSPDGRRIACGSMDGTISVFDVTRAKFLHH----LEGHFMPV-R-SLVYSPVDPR  214 (315)
Q Consensus       141 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~s~dg~i~i~d~~~~~~~~~----~~~~~~~v-~-~~~~~~~~~~  214 (315)
                      +.....         .....+.+++++|++..|+.+..++.|+.||+.++.....    ..++...- . .++|+|.++.
T Consensus       210 ~g~~~~---------~~~~~p~~iav~p~~g~lyv~d~~~~I~~~d~~~~~~~~~~~~~~~g~~~~~P~~~ia~~p~~g~  280 (409)
T 3hrp_A          210 IGQLGS---------TFSGKIGAVALDETEEWLYFVDSNKNFGRFNVKTQEVTLIKQLELSGSLGTNPGPYLIYYFVDSN  280 (409)
T ss_dssp             EEECCT---------TSCSCCCBCEECTTSSEEEEECTTCEEEEEETTTCCEEEEEECCCCSCCCCSSCCEEEEETTTTE
T ss_pred             eeeccc---------hhcCCcEEEEEeCCCCeEEEEECCCcEEEEECCCCCEEEEecccccCCCCCCccccEEEeCCCCE
Confidence            200000         0112356889999555555566788999999976653222    22222222 3 8999997788


Q ss_pred             EEEEEeCCCeEEEEeCCCCeeEEEeecc---------------cccEEEEEEcCCCCeEEEEe-CCCcEEEEecCcccee
Q 021247          215 VLFSASDDTHVHMYDAEGKSLVTAMSGH---------------ASWVLSVDASPDGAAITTGS-SDRTVKLWDLNMRAAM  278 (315)
Q Consensus       215 ~l~s~~~d~~i~~wd~~~~~~~~~~~~~---------------~~~i~~~~~~~~~~~l~s~~-~d~~i~iwd~~~~~~~  278 (315)
                      ++++-..++.|+.|+....  +..+.++               -.....++++|+|+++++-. .+++|+.|++..+.. 
T Consensus       281 lyv~d~~~~~I~~~~~~g~--~~~~~g~~~~~g~~dg~~~~~~~~~P~gia~d~dG~lyvad~~~~~~I~~~~~~~G~v-  357 (409)
T 3hrp_A          281 FYMSDQNLSSVYKITPDGE--CEWFCGSATQKTVQDGLREEALFAQPNGMTVDEDGNFYIVDGFKGYCLRKLDILDGYV-  357 (409)
T ss_dssp             EEEEETTTTEEEEECTTCC--EEEEEECTTCCSCBCEEGGGCBCSSEEEEEECTTCCEEEEETTTTCEEEEEETTTTEE-
T ss_pred             EEEEeCCCCEEEEEecCCC--EEEEEeCCCCCCcCCCcccccEeCCCeEEEEeCCCCEEEEeCCCCCEEEEEECCCCEE-
Confidence            8888888999999998764  2222222               24578999999999878877 889999999766653 


Q ss_pred             hccccc---------------ccceEEEEEeeCCCEEEEEeCCCcEEEeecC
Q 021247          279 QSMTNH---------------TDQVWGVSFRPLGGRVVSVSDDKSISLYEYS  315 (315)
Q Consensus       279 ~~~~~~---------------~~~v~~~~~s~~~~~l~s~~~d~~i~i~~~~  315 (315)
                      .++.++               -....+++++|+|..+++-...++|+.++++
T Consensus       358 ~~~~g~~~~~g~~~g~~~~~~~~~P~giavd~~g~lyVad~~n~~Ir~i~~e  409 (409)
T 3hrp_A          358 STVAGQVDVASQIDGTPLEATFNYPYDICYDGEGGYWIAEAWGKAIRKYAVE  409 (409)
T ss_dssp             EEEEECTTCBSCCCBSTTTCCBSSEEEEEECSSSEEEEEESTTCEEEEEEEC
T ss_pred             EEEeCCCCCCCcCCCChhceEeCCceEEEEcCCCCEEEEECCCCeEEEEEeC
Confidence            333332               2468899999998888888888999988763

>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*

Probab=99.72  E-value=1.5e-13  Score=116.38  Aligned_cols=251  Identities=16%  Similarity=0.077  Sum_probs=172.6

Q ss_pred             cEEEEcCCCCcceeeccccccceEEEEeCCCCCEEEEee----------CCCeEEEEECCCCceeEEeeCC-------cc
Q 021247           41 TVKLWRPDDMQLERTNTGHCLGVVSVAAHPSGIIAASAS----------LDSFVRVFDVDTNASIATLEAS-------PS  103 (315)
Q Consensus        41 ~v~~w~~~~~~~~~~~~~h~~~v~~~~~~~~g~~l~s~~----------~d~~i~~w~~~~~~~~~~~~~~-------~~  103 (315)
                      +|.++|..+.++...++.-..+  .+.++|+|+.++.+.          .++.|.+||..+.+.+..+...       ..
T Consensus        48 ~v~v~D~~t~~~~~~i~~g~~p--~i~~spDg~~lyv~n~~~~~~~rg~~~~~v~viD~~t~~~~~~i~~~~~~~~~~g~  125 (373)
T 2mad_H           48 QQWVLDAGSGSILGHVNGGFLP--NPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPVTFLPIADIELPDAPRFDVGP  125 (373)
T ss_pred             EEEEEECCCCeEEEEecCCCCC--CeEECCCCCEEEEEeccccccccCCCCCeEEEEECCCCcEEEEEECCCccccccCC
Confidence            8899999988877666543333  899999999888765          3678999999988877766543       12


Q ss_pred             cEEEEEECCCCCeEEEEecC-CCeEEEEecCCcceeee-ecCCCCCCCCCCccCCCCcceEEEEECCCC-CEEEEecCCC
Q 021247          104 EVWQMQFDPKGTTLAVAGGG-SASVKLWDTATWNLIAT-LSIPRPEGLKPTDKSSSKKFVLSVAWSPDG-RRIACGSMDG  180 (315)
Q Consensus       104 ~v~~~~~~~~~~~~~~~~~~-d~~i~~~d~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~l~~~s~dg  180 (315)
                      ....+.++|+++.++++... +++|.++| .+++.+.. +..+.                 ++.+.|++ +.+++.+.||
T Consensus       126 ~p~~~~~spDG~~l~v~n~~~~~~v~viD-~t~~~~~~~i~~~~-----------------~~~~~~~~~~~~~~~~~dg  187 (373)
T 2mad_H          126 YSWMNANTPNNADLLFFQFAAGPAVGLVV-QGGSSDDQLLSSPT-----------------CYHIHPGAPSTFYLLCAQG  187 (373)
T ss_pred             CccceEECCCCCEEEEEecCCCCeEEEEE-CCCCEEeEEcCCCc-----------------eEEEEeCCCceEEEEcCCC
Confidence            34578999999998877644 68899999 98888766 53321                 23344554 4556677899


Q ss_pred             cEEEEEcccceeeeeec-----CCccce-EEEEEcCCCCcEEEEEeCCCeEEEEeCCCCe--eEEEeec----------c
Q 021247          181 TISVFDVTRAKFLHHLE-----GHFMPV-RSLVYSPVDPRVLFSASDDTHVHMYDAEGKS--LVTAMSG----------H  242 (315)
Q Consensus       181 ~i~i~d~~~~~~~~~~~-----~~~~~v-~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~--~~~~~~~----------~  242 (315)
                      .+.++|. +++......     ....++ ....+.+.++.+++.. ..+.+.+.|.....  .+..+.-          .
T Consensus       188 ~~~~vd~-~g~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~-~~~~v~vid~~~~~~~v~~~~~~~~~~~~~~~~~  265 (373)
T 2mad_H          188 GLAKTDH-AGGAAGAGLVGAMLTAAQNLLTQPAQANKSGRIVWPV-YSGKILQADISAAGATNKAPIDALSGGRKADTWR  265 (373)
T ss_pred             CEEEEEC-CCcEEEEEeccccccCCcceeecceeEecCCEEEEEc-CCceEEEEeccCCcceEeeeeeecCCccccccee
Confidence            9999999 776553221     111121 2234555455545444 67789999986542  2222210          1


Q ss_pred             cccEEEEEEcCCCCeEEEEeC----------CCcEEEEecCccceehcccccccceEEEEEeeCCC-EEEEEe-CCCcEE
Q 021247          243 ASWVLSVDASPDGAAITTGSS----------DRTVKLWDLNMRAAMQSMTNHTDQVWGVSFRPLGG-RVVSVS-DDKSIS  310 (315)
Q Consensus       243 ~~~i~~~~~~~~~~~l~s~~~----------d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~-~l~s~~-~d~~i~  310 (315)
                      ......+.++|+++.+.++..          ++.|.++|+.+++.+.++.. ....++++|+|||+ +++++. .+++|.
T Consensus       266 p~g~~~~~~s~d~~~lyV~~~~~~~~~~~~~~~~V~VID~~t~~vv~~i~~-g~~p~~i~~s~Dg~~~l~v~~~~~~~V~  344 (373)
T 2mad_H          266 PGGWQQVAYLKSSDGIYLLTSEQSAWKLHAAAKEVTSVTGLVGQTSSQISL-GHDVDAISVAQDGGPDLYALSAGTEVLH  344 (373)
T ss_pred             cCceEeEEECCCCCEEEEEeccCCcccccCCCCeEEEEECCCCEEEEEEEC-CCCcCeEEECCCCCeEEEEEcCCCCeEE
Confidence            122344778999887766543          35799999999988887753 34688999999999 677776 589999


Q ss_pred             Eeec
Q 021247          311 LYEY  314 (315)
Q Consensus       311 i~~~  314 (315)
                      ++|.
T Consensus       345 ViD~  348 (373)
T 2mad_H          345 IYDA  348 (373)
T ss_pred             EEEC
Confidence            9986

>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}

Probab=99.72  E-value=4.7e-16  Score=142.78  Aligned_cols=244  Identities=10%  Similarity=-0.040  Sum_probs=159.3

Q ss_pred             hhccccceEEEEEeecCCCCCcEEE-----EeeCCCcEEEEcCCCCcceeeccccccce--EEEEeCCCCCEEEEeeCCC
Q 021247           10 ENAHEESVWAVTWVPATETRPALLL-----TGSLDETVKLWRPDDMQLERTNTGHCLGV--VSVAAHPSGIIAASASLDS   82 (315)
Q Consensus        10 ~~~h~~~v~~v~~~~~~~~~~~~l~-----sgs~d~~v~~w~~~~~~~~~~~~~h~~~v--~~~~~~~~g~~l~s~~~d~   82 (315)
                      +.+|+..+.+++|+|+++    .|+     .|+.+..|++||.++++....  .+...+  ..+.|+|+|+.|+.++.|.
T Consensus       116 a~~~~~~~~~~~~SPDG~----~la~~~~~~G~~~~~i~v~dl~tg~~~~~--~~~~~~~~~~~~wspDg~~l~~~~~d~  189 (695)
T 2bkl_A          116 SKDGTVSLGTWAVSWDGK----KVAFAQKPNAADEAVLHVIDVDSGEWSKV--DVIEGGKYATPKWTPDSKGFYYEWLPT  189 (695)
T ss_dssp             SSSSCEEEEEEEECTTSS----EEEEEEEETTCSCCEEEEEETTTCCBCSS--CCBSCCTTCCCEECTTSSEEEEEECCC
T ss_pred             ccCCCEEEEEEEECCCCC----EEEEEECCCCCceEEEEEEECCCCCCcCC--cccCcccccceEEecCCCEEEEEEecC
Confidence            346777899999999886    355     344456899999988776411  111122  6789999999999998887


Q ss_pred             e-------------EEEEECCCCce--eEEee--CCcccEEEEEECCCCCeEEEEecCC-C--eEEEEecCCcceeeeec
Q 021247           83 F-------------VRVFDVDTNAS--IATLE--ASPSEVWQMQFDPKGTTLAVAGGGS-A--SVKLWDTATWNLIATLS  142 (315)
Q Consensus        83 ~-------------i~~w~~~~~~~--~~~~~--~~~~~v~~~~~~~~~~~~~~~~~~d-~--~i~~~d~~~~~~~~~~~  142 (315)
                      .             |++|++.+++.  ...+.  .+...+..+.|+|+|+.++++.... +  .|.++|..+++... +.
T Consensus       190 ~~~~~~~~~~~~~~v~~~~l~t~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~l~~~~~~~~~~~~-l~  268 (695)
T 2bkl_A          190 DPSIKVDERPGYTTIRYHTLGTEPSKDTVVHERTGDPTTFLQSDLSRDGKYLFVYILRGWSENDVYWKRPGEKDFRL-LV  268 (695)
T ss_dssp             CTTSCGGGGGGGCEEEEEETTSCGGGCEEEECCCCCTTCEEEEEECTTSCCEEEEEEETTTEEEEEEECTTCSSCEE-EE
T ss_pred             CCCCccccCCCCCEEEEEECCCCchhceEEEecCCCCEEEEEEEECCCCCEEEEEEeCCCCceEEEEEcCCCCceEE-ee
Confidence            6             99999988762  23332  3345788999999999887765443 2  66666654433222 21


Q ss_pred             CCCCCCCCCCccCCCCcceEEEEECCCCCEEEEec---CCCcEEEEEccccee--eeeecC-C-ccceEEEEEcCCCCcE
Q 021247          143 IPRPEGLKPTDKSSSKKFVLSVAWSPDGRRIACGS---MDGTISVFDVTRAKF--LHHLEG-H-FMPVRSLVYSPVDPRV  215 (315)
Q Consensus       143 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~s---~dg~i~i~d~~~~~~--~~~~~~-~-~~~v~~~~~~~~~~~~  215 (315)
                      .+             ...+....+ ++|..++.+.   .++.|.+||+.++..  ...+.. + ...+..+.|+  ++.+
T Consensus       269 ~~-------------~~~~~~~~~-~~g~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~l~~~~~~--~~~l  332 (695)
T 2bkl_A          269 KG-------------VGAKYEVHA-WKDRFYVLTDEGAPRQRVFEVDPAKPARASWKEIVPEDSSASLLSVSIV--GGHL  332 (695)
T ss_dssp             EC-------------SSCCEEEEE-ETTEEEEEECTTCTTCEEEEEBTTBCSGGGCEEEECCCSSCEEEEEEEE--TTEE
T ss_pred             cC-------------CCceEEEEe-cCCcEEEEECCCCCCCEEEEEeCCCCCccCCeEEecCCCCCeEEEEEEE--CCEE
Confidence            11             111334445 5666334433   257899999976642  233332 2 4457778887  5678


Q ss_pred             EEEEeCCCeEEEEeCC-CCeeEEEeecc-cccEEEEEEcCCCCeEE----EEeCCCcEEEEecCccc
Q 021247          216 LFSASDDTHVHMYDAE-GKSLVTAMSGH-ASWVLSVDASPDGAAIT----TGSSDRTVKLWDLNMRA  276 (315)
Q Consensus       216 l~s~~~d~~i~~wd~~-~~~~~~~~~~~-~~~i~~~~~~~~~~~l~----s~~~d~~i~iwd~~~~~  276 (315)
                      +++...|+..++|... .+.....+..+ .+.+..+.++|++..++    +....++|++||+.+++
T Consensus       333 v~~~~~dg~~~l~~~~~~g~~~~~l~~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~v~~~d~~~g~  399 (695)
T 2bkl_A          333 SLEYLKDATSEVRVATLKGKPVRTVQLPGVGAASNLMGLEDLDDAYYVFTSFTTPRQIYKTSVSTGK  399 (695)
T ss_dssp             EEEEEETTEEEEEEEETTCCEEEECCCSSSSEECCCBSCTTCSEEEEEEEETTEEEEEEEEETTTCC
T ss_pred             EEEEEECCEEEEEEEeCCCCeeEEecCCCCeEEEEeecCCCCCEEEEEEcCCCCCCEEEEEECCCCc
Confidence            8899999887777543 23344445444 56677888999887665    23335789999998765

>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...

Probab=99.72  E-value=3.1e-15  Score=125.51  Aligned_cols=256  Identities=15%  Similarity=0.110  Sum_probs=173.5

Q ss_pred             CCcEEEEcCCCCcceeeccccccceEEEEeCCCCCEEEEee----------CCCeEEEEECCCCceeEEeeCCc------
Q 021247           39 DETVKLWRPDDMQLERTNTGHCLGVVSVAAHPSGIIAASAS----------LDSFVRVFDVDTNASIATLEASP------  102 (315)
Q Consensus        39 d~~v~~w~~~~~~~~~~~~~h~~~v~~~~~~~~g~~l~s~~----------~d~~i~~w~~~~~~~~~~~~~~~------  102 (315)
                      ++.|.+.|..+.+....++.-..+ . +.++|+|++++.+.          .++.|.+||..+.+.+.++....      
T Consensus        58 ~~~V~ViD~~t~~v~~~I~vG~~P-~-va~spDG~~lyVan~~~~r~~~G~~~~~VsviD~~t~~v~~~I~v~~g~r~~~  135 (386)
T 3sjl_D           58 VTQQFVIDGEAGRVIGMIDGGFLP-N-PVVADDGSFIAHASTVFSRIARGERTDYVEVFDPVTLLPTADIELPDAPRFLV  135 (386)
T ss_dssp             SEEEEEEETTTTEEEEEEEECSSC-E-EEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCCB
T ss_pred             CCEEEEEECCCCeEEEEEECCCCC-c-EEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCeEEEEEECCCcccccc
Confidence            789999999999888776543344 4 99999999776654          36789999999999888775422      


Q ss_pred             -ccEEEEEECCCCCeEEEEec-CCCeEEEEecCCcceeeeecCCCCCCCCCCccCCCCcceEEEEECCCCCEEEEecCCC
Q 021247          103 -SEVWQMQFDPKGTTLAVAGG-GSASVKLWDTATWNLIATLSIPRPEGLKPTDKSSSKKFVLSVAWSPDGRRIACGSMDG  180 (315)
Q Consensus       103 -~~v~~~~~~~~~~~~~~~~~-~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~s~dg  180 (315)
                       .....+.++|+|+.++++.. .++.|.++|+.+.+.+.++..+..                ...+....+.+++.+.||
T Consensus       136 g~~P~~~a~spDGk~lyVan~~~~~~VsVID~~t~~vv~tI~v~g~----------------~~~~P~g~~~~~~~~~DG  199 (386)
T 3sjl_D          136 GTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDVPDC----------------YHIFPTAPDTFFMHCRDG  199 (386)
T ss_dssp             SCCGGGEEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCSE----------------EEEEEEETTEEEEEETTS
T ss_pred             CCCCceEEEcCCCCEEEEEEcCCCCeEEEEECCCCcEEEEEECCCc----------------ceeecCCCceeEEECCCC
Confidence             23456899999998887764 378999999999999888855321                112222345666667788


Q ss_pred             cEEEEEccc-ceeeeeecCC----ccceE-EEEEcCCCCcEEEEEeCCCeEEEEeCCCCe--eEEEee---------c-c
Q 021247          181 TISVFDVTR-AKFLHHLEGH----FMPVR-SLVYSPVDPRVLFSASDDTHVHMYDAEGKS--LVTAMS---------G-H  242 (315)
Q Consensus       181 ~i~i~d~~~-~~~~~~~~~~----~~~v~-~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~--~~~~~~---------~-~  242 (315)
                      .+.+.++.+ ++.......+    ..++. ...|.+.++++++ .+.++.+++.|..+..  ....+.         + .
T Consensus       200 ~~~~v~~~~~g~v~~~~~~~~~~~~~~~~~~~~~~~~dG~~~~-vs~~g~V~v~d~~~~~~~v~~~~~~~~~~~~~~g~~  278 (386)
T 3sjl_D          200 SLAKVAFGTEGTPEITHTEVFHPEDEFLINHPAYSQKAGRLVW-PTYTGKIHQIDLSSGDAKFLPAVEALTEAERADGWR  278 (386)
T ss_dssp             CEEEEECCSSSCCEEEECCCCSCTTSCBCSCCEEETTTTEEEE-EBTTSEEEEEECTTSSCEECCCEESSCHHHHHTTEE
T ss_pred             CEEEEECCCCCeEEEeecceeccccccccccceeEcCCCcEEE-EeCCCEEEEEECCCCcceeecceecccccccccccc
Confidence            888888765 4432211111    11221 1345433565555 5557999999987653  222221         0 1


Q ss_pred             cccEEEEEEcCCCCeEEEEeC----------CCcEEEEecCccceehcccccccceEEEEEeeCCC-EEEEE-eCCCcEE
Q 021247          243 ASWVLSVDASPDGAAITTGSS----------DRTVKLWDLNMRAAMQSMTNHTDQVWGVSFRPLGG-RVVSV-SDDKSIS  310 (315)
Q Consensus       243 ~~~i~~~~~~~~~~~l~s~~~----------d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~-~l~s~-~~d~~i~  310 (315)
                      ......++++|+++.+...-.          .++|.+.|+.+++.++++.- ...+++++++||++ +|++. ..+++|.
T Consensus       279 p~g~q~~a~~~~~~~lyV~~~~~~~~~hk~~~~~V~viD~~t~kv~~~i~v-g~~~~~lavs~D~~~~ly~tn~~~~~Vs  357 (386)
T 3sjl_D          279 PGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGERLAKFEM-GHEIDSINVSQDEKPLLYALSTGDKTLY  357 (386)
T ss_dssp             ECSSSCEEEETTTTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEE-EEEECEEEECSSSSCEEEEEETTTTEEE
T ss_pred             CCCcceeeECCCCCeEEEEeccccccccCCCCCEEEEEECCCCeEEEEEEC-CCCcceEEECCCCCeEEEEEcCCCCeEE
Confidence            122334677888887766532          25799999999998887754 24788999999997 66664 4589999


Q ss_pred             Eeec
Q 021247          311 LYEY  314 (315)
Q Consensus       311 i~~~  314 (315)
                      ++|.
T Consensus       358 ViD~  361 (386)
T 3sjl_D          358 IHDA  361 (386)
T ss_dssp             EEET
T ss_pred             EEEC
Confidence            9985

>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*

Probab=99.71  E-value=3.1e-13  Score=110.75  Aligned_cols=237  Identities=8%  Similarity=0.050  Sum_probs=169.1

Q ss_pred             ccccceEEEEeCCCCCEEEEeeCCCeEEEEECCCCceeEEee--CCcccEEEEEECCCCCeEEEEecCCCeEEEEecCCc
Q 021247           58 GHCLGVVSVAAHPSGIIAASASLDSFVRVFDVDTNASIATLE--ASPSEVWQMQFDPKGTTLAVAGGGSASVKLWDTATW  135 (315)
Q Consensus        58 ~h~~~v~~~~~~~~g~~l~s~~~d~~i~~w~~~~~~~~~~~~--~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~~d~~~~  135 (315)
                      .+...+.++.++++|.+.++...++.|.+||.. +.. ..+.  .....+..+++++++. +.++...++.|..||.. +
T Consensus        12 ~~~~~~~~i~~d~~g~l~v~~~~~~~v~~~d~~-~~~-~~~~~~~~~~~~~~i~~~~~g~-l~v~~~~~~~i~~~~~~-g   87 (299)
T 2z2n_A           12 NQDTGPYGITVSDKGKVWITQHKANMISCINLD-GKI-TEYPLPTPDAKVMCLTISSDGE-VWFTENAANKIGRITKK-G   87 (299)
T ss_dssp             SSSCCEEEEEECTTSCEEEEETTTTEEEEECTT-CCE-EEEECSSTTCCEEEEEECTTSC-EEEEETTTTEEEEECTT-S
T ss_pred             CcCCCccceEECCCCCEEEEecCCCcEEEEcCC-CCe-EEecCCcccCceeeEEECCCCC-EEEeCCCCCeEEEECCC-C
Confidence            344578999999999988877778899999988 443 3332  2346788999999887 44555667889999975 2


Q ss_pred             ceeeeecCCCCCCCCCCccCCCCcceEEEEECCCCCEEEEecCCCcEEEEEcccceeeee-ecCCccceEEEEEcCCCCc
Q 021247          136 NLIATLSIPRPEGLKPTDKSSSKKFVLSVAWSPDGRRIACGSMDGTISVFDVTRAKFLHH-LEGHFMPVRSLVYSPVDPR  214 (315)
Q Consensus       136 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~s~dg~i~i~d~~~~~~~~~-~~~~~~~v~~~~~~~~~~~  214 (315)
                      + ...+..+.           ....+..+++.++|+.+++...++.|..||. +++.... .......+..+.+.+ ++.
T Consensus        88 ~-~~~~~~~~-----------~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~-~g~~~~~~~~~~~~~~~~i~~~~-~g~  153 (299)
T 2z2n_A           88 I-IKEYTLPN-----------PDSAPYGITEGPNGDIWFTEMNGNRIGRITD-DGKIREYELPNKGSYPSFITLGS-DNA  153 (299)
T ss_dssp             C-EEEEECSS-----------TTCCEEEEEECTTSCEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECT-TSC
T ss_pred             c-EEEEeCCC-----------cCCCceeeEECCCCCEEEEecCCceEEEECC-CCCEEEecCCCCCCCCceEEEcC-CCC
Confidence            2 22332211           1224788999999988888777889999998 4443322 223445678999987 557


Q ss_pred             EEEEEeCCCeEEEEeCCCCeeEEE-eecccccEEEEEEcCCCCeEEEEeCCCcEEEEecCccceehc-ccccccceEEEE
Q 021247          215 VLFSASDDTHVHMYDAEGKSLVTA-MSGHASWVLSVDASPDGAAITTGSSDRTVKLWDLNMRAAMQS-MTNHTDQVWGVS  292 (315)
Q Consensus       215 ~l~s~~~d~~i~~wd~~~~~~~~~-~~~~~~~i~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~-~~~~~~~v~~~~  292 (315)
                      ++++...++.|..||. +++.... ...+...+.++++++++.+.++...++.|.+|+. .++.... ...+...+.+++
T Consensus       154 l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~  231 (299)
T 2z2n_A          154 LWFTENQNNAIGRITE-SGDITEFKIPTPASGPVGITKGNDDALWFVEIIGNKIGRITT-SGEITEFKIPTPNARPHAIT  231 (299)
T ss_dssp             EEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEE
T ss_pred             EEEEeCCCCEEEEEcC-CCcEEEeeCCCCCCcceeEEECCCCCEEEEccCCceEEEECC-CCcEEEEECCCCCCCceeEE
Confidence            7777777889999998 5544332 3334556889999999997777767889999998 5543221 233446788999


Q ss_pred             EeeCCCEEEEEeCCCcEEEeec
Q 021247          293 FRPLGGRVVSVSDDKSISLYEY  314 (315)
Q Consensus       293 ~s~~~~~l~s~~~d~~i~i~~~  314 (315)
                      ++++|+..++...++.|.+|+.
T Consensus       232 ~~~~g~l~v~~~~~~~i~~~d~  253 (299)
T 2z2n_A          232 AGAGIDLWFTEWGANKIGRLTS  253 (299)
T ss_dssp             ECSTTCEEEEETTTTEEEEEET
T ss_pred             ECCCCCEEEeccCCceEEEECC
Confidence            9999987777667788988874

>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*

Probab=99.68  E-value=2.1e-13  Score=121.36  Aligned_cols=228  Identities=13%  Similarity=0.094  Sum_probs=164.7

Q ss_pred             CCCCEEEEeeCCCeEEEEECCCCceeEEeeCCcccEEEEEECCCCCeEEEEecCCCeEEEEecC--CcceeeeecCCCCC
Q 021247           70 PSGIIAASASLDSFVRVFDVDTNASIATLEASPSEVWQMQFDPKGTTLAVAGGGSASVKLWDTA--TWNLIATLSIPRPE  147 (315)
Q Consensus        70 ~~g~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~~d~~--~~~~~~~~~~~~~~  147 (315)
                      +.+.++++...+++|.++|..+++.+.++.... .+..+.++|++++++++ +.++.|.+||+.  +.+.+..+....  
T Consensus       165 ~~~~~~V~~~~~~~V~viD~~t~~v~~~i~~g~-~p~~v~~SpDGr~lyv~-~~dg~V~viD~~~~t~~~v~~i~~G~--  240 (567)
T 1qks_A          165 LENLFSVTLRDAGQIALIDGSTYEIKTVLDTGY-AVHISRLSASGRYLFVI-GRDGKVNMIDLWMKEPTTVAEIKIGS--  240 (567)
T ss_dssp             GGGEEEEEETTTTEEEEEETTTCCEEEEEECSS-CEEEEEECTTSCEEEEE-ETTSEEEEEETTSSSCCEEEEEECCS--
T ss_pred             CCceEEEEeCCCCeEEEEECCCCeEEEEEeCCC-CccceEECCCCCEEEEE-cCCCeEEEEECCCCCCcEeEEEecCC--
Confidence            455677888889999999999999888887543 45689999999987654 578999999995  666666553211  


Q ss_pred             CCCCCccCCCCcceEEEEEC----CCCCEEEEec-CCCcEEEEEcccceeeeeecCC-----------ccceEEEEEcCC
Q 021247          148 GLKPTDKSSSKKFVLSVAWS----PDGRRIACGS-MDGTISVFDVTRAKFLHHLEGH-----------FMPVRSLVYSPV  211 (315)
Q Consensus       148 ~~~~~~~~~~~~~i~~~~~~----~~~~~l~~~s-~dg~i~i~d~~~~~~~~~~~~~-----------~~~v~~~~~~~~  211 (315)
                                  ....++|+    |+|++++++. .++.+.++|..+.+.+..+...           ...+..+..++.
T Consensus       241 ------------~P~~ia~s~~~~pDGk~l~v~n~~~~~v~ViD~~t~~~~~~i~~~~~~~~~~~~~p~~rva~i~~s~~  308 (567)
T 1qks_A          241 ------------EARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHY  308 (567)
T ss_dssp             ------------EEEEEEECCSTTCTTTEEEEEEEETTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSS
T ss_pred             ------------CCceeEEccccCCCCCEEEEEEccCCeEEEEECCCCcEEEEEeccccccccccccCCCceEEEEEcCC
Confidence                        25689999    6999887655 5689999999998887765422           124677888887


Q ss_pred             CCcEEEEEeCCCeEEEEeCCCCeeEEE-eecccccEEEEEEcCCCCeEEEEe-CCCcEEEEecCccceehcccc-----c
Q 021247          212 DPRVLFSASDDTHVHMYDAEGKSLVTA-MSGHASWVLSVDASPDGAAITTGS-SDRTVKLWDLNMRAAMQSMTN-----H  284 (315)
Q Consensus       212 ~~~~l~s~~~d~~i~~wd~~~~~~~~~-~~~~~~~i~~~~~~~~~~~l~s~~-~d~~i~iwd~~~~~~~~~~~~-----~  284 (315)
                      ++.++++....|.|.++|......+.. .........++.|+|++++++++. .+++|.++|+.+++....+..     |
T Consensus       309 ~~~~vv~~~~~g~v~~vd~~~~~~~~v~~i~~~~~~~d~~~~pdgr~~~va~~~sn~V~ViD~~t~kl~~~i~vgg~~Ph  388 (567)
T 1qks_A          309 RPEFIVNVKETGKILLVDYTDLNNLKTTEISAERFLHDGGLDGSHRYFITAANARNKLVVIDTKEGKLVAIEDTGGQTPH  388 (567)
T ss_dssp             SSEEEEEETTTTEEEEEETTCSSEEEEEEEECCSSEEEEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSSBC
T ss_pred             CCEEEEEecCCCeEEEEecCCCccceeeeeeccccccCceECCCCCEEEEEeCCCCeEEEEECCCCcEEEEEeccCcCCC
Confidence            777788888889999999876532221 122334567889999999876655 578899999999876655432     3


Q ss_pred             ccceEEEEEeeCCCEEEEEe--CCCcEEEeec
Q 021247          285 TDQVWGVSFRPLGGRVVSVS--DDKSISLYEY  314 (315)
Q Consensus       285 ~~~v~~~~~s~~~~~l~s~~--~d~~i~i~~~  314 (315)
                      -+.--. -++|++..+...+  .+++|.+++.
T Consensus       389 pg~g~~-~~~p~~g~v~~t~~~g~~~Vsvid~  419 (567)
T 1qks_A          389 PGRGAN-FVHPTFGPVWATSHMGDDSVALIGT  419 (567)
T ss_dssp             CTTCEE-EEETTTEEEEEEEBSSSSEEEEEEC
T ss_pred             Ccccee-eECCCCCcEEEeCCCCCCeEEEecC
Confidence            211111 2688766664433  4689999985

>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}

Probab=99.68  E-value=2.9e-14  Score=131.86  Aligned_cols=243  Identities=16%  Similarity=0.096  Sum_probs=154.7

Q ss_pred             cccceEEEEeCCCCCEEEEeeCC-----CeEEEEECCCCceeEEeeCCcccEEEEEECCCCCeEEEEecCCC--------
Q 021247           59 HCLGVVSVAAHPSGIIAASASLD-----SFVRVFDVDTNASIATLEASPSEVWQMQFDPKGTTLAVAGGGSA--------  125 (315)
Q Consensus        59 h~~~v~~~~~~~~g~~l~s~~~d-----~~i~~w~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~--------  125 (315)
                      |...+..+.|+|||++|+.+..+     ..|++||+.+++.+.... ....+..++|+|+ +.++++.....        
T Consensus       161 ~~~~~~~~~~SPDG~~la~~~~~~G~e~~~i~v~dl~tg~~~~~~~-~~~~~~~~~wspD-~~l~~~~~~~~~~~~~~~~  238 (741)
T 1yr2_A          161 GATALDAWAASDDGRLLAYSVQDGGSDWRTVKFVGVADGKPLADEL-KWVKFSGLAWLGN-DALLYSRFAEPKEGQAFQA  238 (741)
T ss_dssp             --EEEEEEEECTTSSEEEEEEEETTCSEEEEEEEETTTCCEEEEEE-EEEESCCCEESTT-SEEEEEECCCC--------
T ss_pred             CCEEEEeEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCCccC-CCceeccEEEECC-CEEEEEEecCccccccccc
Confidence            44568889999999988866543     469999999987654311 1112246789999 88877654322        


Q ss_pred             -----eEEEEecCCcceeeeecCCCCCCCCCCccCCCCcceEEEEECCCCCEEEEecCC-----CcEEEEEcccc--eee
Q 021247          126 -----SVKLWDTATWNLIATLSIPRPEGLKPTDKSSSKKFVLSVAWSPDGRRIACGSMD-----GTISVFDVTRA--KFL  193 (315)
Q Consensus       126 -----~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~s~d-----g~i~i~d~~~~--~~~  193 (315)
                           .|++|++.+......+....         ..+..++..+.|+|||++|+..+.+     ..|++||+.++  +..
T Consensus       239 ~~~~~~v~~~~lgt~~~~~~lv~~~---------~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~  309 (741)
T 1yr2_A          239 LNYNQTVWLHRLGTPQSADQPVFAT---------PELPKRGHGASVSSDGRWVVITSSEGTDPVNTVHVARVTNGKIGPV  309 (741)
T ss_dssp             CCCCCEEEEEETTSCGGGCEEEECC---------TTCTTCEEEEEECTTSCEEEEEEECTTCSCCEEEEEEEETTEECCC
T ss_pred             CCCCCEEEEEECCCCchhCEEEecc---------CCCCeEEEEEEECCCCCEEEEEEEccCCCcceEEEEECCCCCCccc
Confidence                 48889887654211111111         1122347789999999988876644     38999999876  313


Q ss_pred             eeecCCccceEEEEEcCCCCcEEEEEeC---CCeEEEEeCCCC--eeEEEeecccccEEEEEEcCCCCeEEEEeCCCcEE
Q 021247          194 HHLEGHFMPVRSLVYSPVDPRVLFSASD---DTHVHMYDAEGK--SLVTAMSGHASWVLSVDASPDGAAITTGSSDRTVK  268 (315)
Q Consensus       194 ~~~~~~~~~v~~~~~~~~~~~~l~s~~~---d~~i~~wd~~~~--~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~d~~i~  268 (315)
                      ..+..+...+.... +|++..+++....   ++.|.+||..+.  .....+..+...+..+.++ ++.++++...|+..+
T Consensus       310 ~~l~~~~~~~~~~~-~~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~l~~~~~~~l~~~~~~-~~~lv~~~~~dg~~~  387 (741)
T 1yr2_A          310 TALIPDLKAQWDFV-DGVGDQLWFVSGDGAPLKKIVRVDLSGSTPRFDTVVPESKDNLESVGIA-GNRLFASYIHDAKSQ  387 (741)
T ss_dssp             EEEECSSSSCEEEE-EEETTEEEEEECTTCTTCEEEEEECSSSSCEEEEEECCCSSEEEEEEEE-BTEEEEEEEETTEEE
T ss_pred             EEecCCCCceEEEE-eccCCEEEEEECCCCCCCEEEEEeCCCCccccEEEecCCCCeEEEEEEE-CCEEEEEEEECCEEE
Confidence            44544444444443 3644444444332   456999998874  3333344444556677777 567888999999888


Q ss_pred             EEecC-ccceehcccc-cccceEEEEEeeCCCEEE-E---EeCCCcEEEeec
Q 021247          269 LWDLN-MRAAMQSMTN-HTDQVWGVSFRPLGGRVV-S---VSDDKSISLYEY  314 (315)
Q Consensus       269 iwd~~-~~~~~~~~~~-~~~~v~~~~~s~~~~~l~-s---~~~d~~i~i~~~  314 (315)
                      +|.++ .++..+.+.. +...+..++++|++..|+ +   ....++|.+||+
T Consensus       388 l~~~~~~g~~~~~l~~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~  439 (741)
T 1yr2_A          388 VLAFDLDGKPAGAVSLPGIGSASGLSGRPGDRHAYLSFSSFTQPATVLALDP  439 (741)
T ss_dssp             EEEEETTSCEEEECBCSSSCEEEEEECCBTCSCEEEEEEETTEEEEEEEEET
T ss_pred             EEEEeCCCCceeeccCCCCeEEEEeecCCCCCEEEEEEcCCCCCCEEEEEEC
Confidence            87654 3444444544 356788999999988765 2   223478888875

>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...

Probab=99.67  E-value=2.8e-13  Score=111.99  Aligned_cols=236  Identities=10%  Similarity=0.091  Sum_probs=159.7

Q ss_pred             ceEEEEEeecCCCCCcEEEE-------eeCCCcEEEEcCCCCcceeecc----ccccceEEEEeCCC-CCEEEEeeCCCe
Q 021247           16 SVWAVTWVPATETRPALLLT-------GSLDETVKLWRPDDMQLERTNT----GHCLGVVSVAAHPS-GIIAASASLDSF   83 (315)
Q Consensus        16 ~v~~v~~~~~~~~~~~~l~s-------gs~d~~v~~w~~~~~~~~~~~~----~h~~~v~~~~~~~~-g~~l~s~~~d~~   83 (315)
                      ...+++|.+.+.    ++++       +..++.|..|+..+.+......    ++...+..+.++++ |.++++.. ...
T Consensus        19 ~~~~~~~~~~g~----l~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~~~~~g~l~v~~~-~~~   93 (314)
T 1pjx_A           19 GAEGPVFDKNGD----FYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKPEVNGYGGIPAGCQCDRDANQLFVADM-RLG   93 (314)
T ss_dssp             TCEEEEECTTSC----EEEEETTCEETTEECCEEEEECTTTCCEEEEECCEETTEECCEEEEEECSSSSEEEEEET-TTE
T ss_pred             CccCceECCCCC----EEEEEeccccCCCCCCEEEEEeCCCCcEEEEEecccCCCCCCCceEEEecCCCcEEEEEC-CCC
Confidence            567889986543    5666       5778999999987766543222    25567899999999 77666554 447


Q ss_pred             EEEEECCCCceeEE-eeC----CcccEEEEEECCCCCeEEEEecCC---------------CeEEEEecCCcceeeeecC
Q 021247           84 VRVFDVDTNASIAT-LEA----SPSEVWQMQFDPKGTTLAVAGGGS---------------ASVKLWDTATWNLIATLSI  143 (315)
Q Consensus        84 i~~w~~~~~~~~~~-~~~----~~~~v~~~~~~~~~~~~~~~~~~d---------------~~i~~~d~~~~~~~~~~~~  143 (315)
                      |.+||.. ++.... ...    ....+..++++|+++.+ ++...+               +.|..+|.. ++...... 
T Consensus        94 l~~~d~~-g~~~~~~~~~~~~~~~~~~~~i~~d~~g~l~-v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-g~~~~~~~-  169 (314)
T 1pjx_A           94 LLVVQTD-GTFEEIAKKDSEGRRMQGCNDCAFDYEGNLW-ITAPAGEVAPADYTRSMQEKFGSIYCFTTD-GQMIQVDT-  169 (314)
T ss_dssp             EEEEETT-SCEEECCSBCTTSCBCBCCCEEEECTTSCEE-EEECBCBCTTSCCCBTTSSSCEEEEEECTT-SCEEEEEE-
T ss_pred             EEEEeCC-CCEEEEEeccCCCccccCCcCEEECCCCCEE-EEecCcccccccccccccCCCCeEEEECCC-CCEEEecc-
Confidence            9999988 554322 211    12347889999998754 444333               467777654 33222110 


Q ss_pred             CCCCCCCCCccCCCCcceEEEEEC----CCCCEE-EEecCCCcEEEEEcc-cce-----eeeeecCCc-cceEEEEEcCC
Q 021247          144 PRPEGLKPTDKSSSKKFVLSVAWS----PDGRRI-ACGSMDGTISVFDVT-RAK-----FLHHLEGHF-MPVRSLVYSPV  211 (315)
Q Consensus       144 ~~~~~~~~~~~~~~~~~i~~~~~~----~~~~~l-~~~s~dg~i~i~d~~-~~~-----~~~~~~~~~-~~v~~~~~~~~  211 (315)
                                   .......++++    |+++.+ ++...++.|.+||+. .++     ....+..+. ..+..+++++ 
T Consensus       170 -------------~~~~~~~i~~~~~~d~dg~~l~v~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~i~~d~-  235 (314)
T 1pjx_A          170 -------------AFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDE-  235 (314)
T ss_dssp             -------------EESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBT-
T ss_pred             -------------CCCCcceEEEecccCCCCCEEEEEECCCCeEEEEECCCCCccccceEEEECCCCCCCCCCceEECC-
Confidence                         01125688999    998765 455678899999986 343     222333333 5578899998 


Q ss_pred             CCcEEEEEeCCCeEEEEeCCCCeeEEEeecccccEEEEEEcCCCCe-EEEEeCCCcEEEEecCc
Q 021247          212 DPRVLFSASDDTHVHMYDAEGKSLVTAMSGHASWVLSVDASPDGAA-ITTGSSDRTVKLWDLNM  274 (315)
Q Consensus       212 ~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~i~~~~~~~~~~~-l~s~~~d~~i~iwd~~~  274 (315)
                      +++++++...++.|.+||.++++.+..+..+...+.+++++|+++. +++...++.|..|++..
T Consensus       236 ~G~l~v~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~i~~~~dg~~l~v~~~~~~~l~~~~~~~  299 (314)
T 1pjx_A          236 DNNLLVANWGSSHIEVFGPDGGQPKMRIRCPFEKPSNLHFKPQTKTIFVTEHENNAVWKFEWQR  299 (314)
T ss_dssp             TCCEEEEEETTTEEEEECTTCBSCSEEEECSSSCEEEEEECTTSSEEEEEETTTTEEEEEECSS
T ss_pred             CCCEEEEEcCCCEEEEEcCCCCcEeEEEeCCCCCceeEEECCCCCEEEEEeCCCCeEEEEeCCC
Confidence            5678888778899999999866666666666678999999999984 45555678899999875

>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B

Probab=99.67  E-value=4.4e-13  Score=110.15  Aligned_cols=227  Identities=10%  Similarity=-0.004  Sum_probs=154.8

Q ss_pred             eEEEEeCCC-CCEEEEeeCCCeEEEEECCCCceeEEeeCCcccEEEEEECCCCCeEEEEecCCCeEEEEecCCcceeeee
Q 021247           63 VVSVAAHPS-GIIAASASLDSFVRVFDVDTNASIATLEASPSEVWQMQFDPKGTTLAVAGGGSASVKLWDTATWNLIATL  141 (315)
Q Consensus        63 v~~~~~~~~-g~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~  141 (315)
                      .-...|+++ +.++++...++.|+.||..++.. ..+. ....+..++++|+++ ++++.  +..|.+||..+++.....
T Consensus        15 ~Egp~w~~~~~~l~~~d~~~~~i~~~d~~~~~~-~~~~-~~~~~~~i~~~~dG~-l~v~~--~~~l~~~d~~~g~~~~~~   89 (297)
T 3g4e_A           15 GESPVWEEVSNSLLFVDIPAKKVCRWDSFTKQV-QRVT-MDAPVSSVALRQSGG-YVATI--GTKFCALNWKEQSAVVLA   89 (297)
T ss_dssp             EEEEEEETTTTEEEEEETTTTEEEEEETTTCCE-EEEE-CSSCEEEEEEBTTSS-EEEEE--TTEEEEEETTTTEEEEEE
T ss_pred             ccCCeEECCCCEEEEEECCCCEEEEEECCCCcE-EEEe-CCCceEEEEECCCCC-EEEEE--CCeEEEEECCCCcEEEEE
Confidence            346677774 56777777789999999987754 3333 346788999999998 44433  568999998876543322


Q ss_pred             cCCCCCCCCCCccCCCCcceEEEEECCCCCEEEEecC-----------CCcEEEEEcccceeeeeecCCccceEEEEEcC
Q 021247          142 SIPRPEGLKPTDKSSSKKFVLSVAWSPDGRRIACGSM-----------DGTISVFDVTRAKFLHHLEGHFMPVRSLVYSP  210 (315)
Q Consensus       142 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~s~-----------dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~  210 (315)
                      .....         .....+..++++|+|+++++...           .+.|+.+|.. ++.. .+..+....+.++|+|
T Consensus        90 ~~~~~---------~~~~~~~di~~d~dG~l~~~~~~~~~~~~~~~~~~~~l~~~d~~-g~~~-~~~~~~~~pngi~~sp  158 (297)
T 3g4e_A           90 TVDND---------KKNNRFNDGKVDPAGRYFAGTMAEETAPAVLERHQGALYSLFPD-HHVK-KYFDQVDISNGLDWSL  158 (297)
T ss_dssp             ECCTT---------CSSEEEEEEEECTTSCEEEEEEECCSBTTBCCTTCEEEEEECTT-SCEE-EEEEEESBEEEEEECT
T ss_pred             ecCCC---------CCCCCCCCEEECCCCCEEEecCCcccccccccCCCcEEEEEECC-CCEE-EEeeccccccceEEcC
Confidence            21110         11234788999999996665422           2345555543 2222 2222334568899999


Q ss_pred             CCCcEEEEEeCCCeEEEEeC--CCCee-----EEEeecccccEEEEEEcCCCCeEEEEeCCCcEEEEecCccceehcccc
Q 021247          211 VDPRVLFSASDDTHVHMYDA--EGKSL-----VTAMSGHASWVLSVDASPDGAAITTGSSDRTVKLWDLNMRAAMQSMTN  283 (315)
Q Consensus       211 ~~~~~l~s~~~d~~i~~wd~--~~~~~-----~~~~~~~~~~i~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~  283 (315)
                      ++..++++.+.++.|.+|+.  .++.+     ...+..+...+..++++++|++.++...++.|..||..+++.+..+..
T Consensus       159 dg~~lyv~~~~~~~i~~~~~d~~~G~~~~~~~~~~~~~~~~~p~g~~~d~~G~lwva~~~~~~v~~~d~~tG~~~~~i~~  238 (297)
T 3g4e_A          159 DHKIFYYIDSLSYSVDAFDYDLQTGQISNRRSVYKLEKEEQIPDGMCIDAEGKLWVACYNGGRVIRLDPVTGKRLQTVKL  238 (297)
T ss_dssp             TSCEEEEEEGGGTEEEEEEECTTTCCEEEEEEEEECCGGGCEEEEEEEBTTSCEEEEEETTTEEEEECTTTCCEEEEEEC
T ss_pred             CCCEEEEecCCCCcEEEEeccCCCCcccCcEEEEECCCCCCCCCeeEECCCCCEEEEEcCCCEEEEEcCCCceEEEEEEC
Confidence            65556677778899999986  34432     222233445678999999998888877888999999998888888877


Q ss_pred             cccceEEEEEe-eCCCEEEEEeC
Q 021247          284 HTDQVWGVSFR-PLGGRVVSVSD  305 (315)
Q Consensus       284 ~~~~v~~~~~s-~~~~~l~s~~~  305 (315)
                      +...+++++|. |+++.|+.++.
T Consensus       239 p~~~~t~~~f~g~d~~~L~vt~~  261 (297)
T 3g4e_A          239 PVDKTTSCCFGGKNYSEMYVTCA  261 (297)
T ss_dssp             SSSBEEEEEEESGGGCEEEEEEB
T ss_pred             CCCCceEEEEeCCCCCEEEEEcC
Confidence            77789999999 89887754443

>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}

Probab=99.66  E-value=3.9e-12  Score=104.19  Aligned_cols=237  Identities=8%  Similarity=0.049  Sum_probs=167.0

Q ss_pred             cccceEEEEeCCCCCEEEEeeCCCeEEEEECCCCceeE-EeeCCcccEEEEEECCCCCeEEEEecCCCeEEEEecCCcce
Q 021247           59 HCLGVVSVAAHPSGIIAASASLDSFVRVFDVDTNASIA-TLEASPSEVWQMQFDPKGTTLAVAGGGSASVKLWDTATWNL  137 (315)
Q Consensus        59 h~~~v~~~~~~~~g~~l~s~~~d~~i~~w~~~~~~~~~-~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~~d~~~~~~  137 (315)
                      ....+.++.+.++|.+.++...++.|.+||.. ++... .+......+..++++++++ ++++...++.|..+|.. ++.
T Consensus        18 ~~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~-~~~~~~~~~~~~~~~~~i~~~~~g~-l~v~~~~~~~v~~~d~~-g~~   94 (300)
T 2qc5_A           18 PDSGPYGITSSEDGKVWFTQHKANKISSLDQS-GRIKEFEVPTPDAKVMCLIVSSLGD-IWFTENGANKIGKLSKK-GGF   94 (300)
T ss_dssp             TTCCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECTTSC-EEEEETTTTEEEEECTT-SCE
T ss_pred             CCCCcceeeECCCCCEEEEcCCCCeEEEECCC-CceEEEECCCCCCcceeEEECCCCC-EEEEecCCCeEEEECCC-CCe
Confidence            34577899999999988887778999999987 44332 2222335688999999887 45565667889999987 443


Q ss_pred             eeeecCCCCCCCCCCccCCCCcceEEEEECCCCCEEEEecCCCcEEEEEcccceeee-eecCCccceEEEEEcCCCCcEE
Q 021247          138 IATLSIPRPEGLKPTDKSSSKKFVLSVAWSPDGRRIACGSMDGTISVFDVTRAKFLH-HLEGHFMPVRSLVYSPVDPRVL  216 (315)
Q Consensus       138 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~s~dg~i~i~d~~~~~~~~-~~~~~~~~v~~~~~~~~~~~~l  216 (315)
                       ..+..+.           ....+..+++.++|+.+++...++.|..+|.. ++... .+......+..+.+.+ +++++
T Consensus        95 -~~~~~~~-----------~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~~~i~~d~-~g~l~  160 (300)
T 2qc5_A           95 -TEYPLPQ-----------PDSGPYGITEGLNGDIWFTQLNGDRIGKLTAD-GTIYEYDLPNKGSYPAFITLGS-DNALW  160 (300)
T ss_dssp             -EEEECSS-----------TTCCEEEEEECSTTCEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECT-TSSEE
T ss_pred             -EEecCCC-----------CCCCCccceECCCCCEEEEccCCCeEEEECCC-CCEEEccCCCCCCCceeEEECC-CCCEE
Confidence             2232211           11237899999999888887778899999987 55432 2333345678999988 55677


Q ss_pred             EEEeCCCeEEEEeCCCCeeEEE-eecccccEEEEEEcCCCCeEEEEeCCCcEEEEecCccceeh-cccccccceEEEEEe
Q 021247          217 FSASDDTHVHMYDAEGKSLVTA-MSGHASWVLSVDASPDGAAITTGSSDRTVKLWDLNMRAAMQ-SMTNHTDQVWGVSFR  294 (315)
Q Consensus       217 ~s~~~d~~i~~wd~~~~~~~~~-~~~~~~~i~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~-~~~~~~~~v~~~~~s  294 (315)
                      ++...++.|..||.. ++.... ...+...+..+++++++.+.++...++.|.+|+. .++... ....+...+.+++++
T Consensus       161 v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~d  238 (300)
T 2qc5_A          161 FTENQNNSIGRITNT-GKLEEYPLPTNAAAPVGITSGNDGALWFVEIMGNKIGRITT-TGEISEYDIPTPNARPHAITAG  238 (300)
T ss_dssp             EEETTTTEEEEECTT-CCEEEEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEEC
T ss_pred             EEecCCCeEEEECCC-CcEEEeeCCCCCCCcceEEECCCCCEEEEccCCCEEEEEcC-CCcEEEEECCCCCCCceEEEEC
Confidence            777778899999984 433332 2234456889999999987777667778999998 333322 123345678899999


Q ss_pred             eCCCEEEEEeCCCcEEEeec
Q 021247          295 PLGGRVVSVSDDKSISLYEY  314 (315)
Q Consensus       295 ~~~~~l~s~~~d~~i~i~~~  314 (315)
                      ++|+..++...++.|..|+.
T Consensus       239 ~~g~l~v~~~~~~~i~~~~~  258 (300)
T 2qc5_A          239 KNSEIWFTEWGANQIGRITN  258 (300)
T ss_dssp             STTCEEEEETTTTEEEEECT
T ss_pred             CCCCEEEeccCCCeEEEECC
Confidence            99987777666788888864

>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}

Probab=99.61  E-value=1.4e-13  Score=117.40  Aligned_cols=254  Identities=13%  Similarity=0.126  Sum_probs=170.3

Q ss_pred             CcEEEEcCCCCcceeeccccccceEEEEeCCCCCEEEEee----------CCCeEEEEECCCCceeEEeeCC-------c
Q 021247           40 ETVKLWRPDDMQLERTNTGHCLGVVSVAAHPSGIIAASAS----------LDSFVRVFDVDTNASIATLEAS-------P  102 (315)
Q Consensus        40 ~~v~~w~~~~~~~~~~~~~h~~~v~~~~~~~~g~~l~s~~----------~d~~i~~w~~~~~~~~~~~~~~-------~  102 (315)
                      +.|.++|..+.+....++--..+  .+.++|+|+.++.+.          .++.|.++|..+.+.+..+...       .
T Consensus        99 ~~VsVID~~t~~vv~~I~vG~~P--gia~SpDgk~lyVan~~~~~~~~G~~~~~VsviD~~t~~vv~~I~v~g~~r~~~g  176 (426)
T 3c75_H           99 TQQFVIDGSTGRILGMTDGGFLP--HPVAAEDGSFFAQASTVFERIARGKRTDYVEVFDPVTFLPIADIELPDAPRFLVG  176 (426)
T ss_dssp             EEEEEEETTTTEEEEEEEECSSC--EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCCBS
T ss_pred             CeEEEEECCCCEEEEEEECCCCC--ceEECCCCCEEEEEeccccccccCCCCCEEEEEECCCCcEEEEEECCCccccccC
Confidence            79999999999888776543344  899999998777664          4678999999999888776532       1


Q ss_pred             ccEEEEEECCCCCeEEEEecC-CCeEEEEecCCcceeeeecCCCCCCCCCCccCCCCcceEEEEECCCC-CEEEEecCCC
Q 021247          103 SEVWQMQFDPKGTTLAVAGGG-SASVKLWDTATWNLIATLSIPRPEGLKPTDKSSSKKFVLSVAWSPDG-RRIACGSMDG  180 (315)
Q Consensus       103 ~~v~~~~~~~~~~~~~~~~~~-d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~l~~~s~dg  180 (315)
                      .....+.++|++++++++... ++.|.++|+.+.+.+..+..+..                 ....|++ +.+++.+.||
T Consensus       177 ~~P~~~~~spDGk~lyV~n~~~~~~VsVID~~t~kvv~~I~v~g~-----------------~~~~p~g~~~~v~~~~dG  239 (426)
T 3c75_H          177 TYQWMNALTPDNKNLLFYQFSPAPAVGVVDLEGKTFDRMLDVPDC-----------------YHIFPASPTVFYMNCRDG  239 (426)
T ss_dssp             CCGGGSEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCSE-----------------EEEEEEETTEEEEEETTS
T ss_pred             CCcceEEEcCCCCEEEEEecCCCCeEEEEECCCCeEEEEEEcCCc-----------------eeeccCCCcEEEEEcCCC
Confidence            223467899999998877643 68999999999998887765321                 1122322 3445555667


Q ss_pred             cEEEEEcccceeeee----ecCCccce-EEEEEcCCCCcEEEEEeCCCeEEEEeCCCCeeEE--Eeec----------cc
Q 021247          181 TISVFDVTRAKFLHH----LEGHFMPV-RSLVYSPVDPRVLFSASDDTHVHMYDAEGKSLVT--AMSG----------HA  243 (315)
Q Consensus       181 ~i~i~d~~~~~~~~~----~~~~~~~v-~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~--~~~~----------~~  243 (315)
                      .+.+.++.+++....    +.....++ ..+.+.+.+.+++++ ...+.+.+.|..+.....  ...-          ..
T Consensus       240 ~~~~V~~~~~~v~~~~~~~~~v~~~p~~~~~~~~~dg~~~~~~-s~~g~V~ViD~~~~~~~v~~~~~~~~~~~i~~g~~p  318 (426)
T 3c75_H          240 SLARVDFADGETKVTNTEVFHTEDELLINHPAFSLRSGRLVWP-TYTGKIFQADLTAEGATFRAPIEALTEAERADDWRP  318 (426)
T ss_dssp             SEEEEECCTTCCEEEECCCCSCTTSCBCSCCEECTTTCEEEEE-BTTSEEEEEEECSSCEEECCCEESSCTTTGGGTEEE
T ss_pred             CEEEEECCCCcEEEEeeeeeccCCCceeeEeeecCCCCEEEEE-eCCCcEEEEeccCCceEEeeeeeecccccccccccc
Confidence            766666644443321    11111121 124567755444444 567899999986543221  1110          01


Q ss_pred             ccEEEEEEcCCCCeEEEEeC----------CCcEEEEecCccceehcccccccceEEEEEeeCCC-EEEEEe-CCCcEEE
Q 021247          244 SWVLSVDASPDGAAITTGSS----------DRTVKLWDLNMRAAMQSMTNHTDQVWGVSFRPLGG-RVVSVS-DDKSISL  311 (315)
Q Consensus       244 ~~i~~~~~~~~~~~l~s~~~----------d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~-~l~s~~-~d~~i~i  311 (315)
                      .....++++|+++.+++...          ++.|.++|+.+.+.+.++..- ...++++|+|+|+ ++++.. .+++|.+
T Consensus       319 ~g~~~va~s~dg~rlyVa~~~~~~gthk~~s~~VsVID~~T~kvv~~I~vg-~~P~gia~spDg~~~lyv~n~~s~~VsV  397 (426)
T 3c75_H          319 GGWQQTAYHRQSDRIYLLVDQRDEWKHKAASRFVVVLNAETGERINKIELG-HEIDSINVSQDAEPLLYALSAGTQTLHI  397 (426)
T ss_dssp             CSSSCEEEEGGGTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEEE-EEECEEEECCSSSCEEEEEETTTTEEEE
T ss_pred             CCceeeEEcCCCCEEEEEecccccccccCCCCEEEEEECCCCeEEEEEECC-CCcCeEEEccCCCEEEEEEcCCCCeEEE
Confidence            11123688999876655532          357999999999988887542 3588999999999 888887 5899999


Q ss_pred             eec
Q 021247          312 YEY  314 (315)
Q Consensus       312 ~~~  314 (315)
                      +|.
T Consensus       398 ID~  400 (426)
T 3c75_H          398 YDA  400 (426)
T ss_dssp             EET
T ss_pred             EEC
Confidence            986

>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}

Probab=99.61  E-value=1.7e-12  Score=111.42  Aligned_cols=241  Identities=9%  Similarity=0.058  Sum_probs=163.5

Q ss_pred             ccceEEEEEeecCCCCCcEEEEeeCCCcEEEEcCCCCcceeeccccccceEEEEeCCCCCEEEEeeCCC--eEEEEECCC
Q 021247           14 EESVWAVTWVPATETRPALLLTGSLDETVKLWRPDDMQLERTNTGHCLGVVSVAAHPSGIIAASASLDS--FVRVFDVDT   91 (315)
Q Consensus        14 ~~~v~~v~~~~~~~~~~~~l~sgs~d~~v~~w~~~~~~~~~~~~~h~~~v~~~~~~~~g~~l~s~~~d~--~i~~w~~~~   91 (315)
                      -...+.|+|.|.++    ++++...++.|+.|++++..+......... .. +++++++..++.+..++  .|.+++...
T Consensus       130 ~~~P~~la~d~~g~----lyv~d~~~~~I~~id~~~g~~~~~~~~~~~-~~-ia~~~~g~~l~~~d~~~~~~I~~~d~~~  203 (409)
T 3hrp_A          130 FKYMWGIAAVGNNT----VLAYQRDDPRVRLISVDDNKVTTVHPGFKG-GK-PAVTKDKQRVYSIGWEGTHTVYVYMKAS  203 (409)
T ss_dssp             CCCEEEEEECSTTE----EEEEETTTTEEEEEETTTTEEEEEEETCCB-CB-CEECTTSSEEEEEBSSTTCEEEEEEGGG
T ss_pred             cCCceEEEEeCCCC----EEEEecCCCcEEEEECCCCEEEEeeccCCC-Cc-eeEecCCCcEEEEecCCCceEEEEEcCC
Confidence            34788999987553    566666779999999987766554433222 33 89999999888887766  799999876


Q ss_pred             CceeEEe----eCCcccEEEEEECCCCCeEEEEecCCCeEEEEecCCcceeeeecCCCCCCCCCCccCCCCcceEEEEEC
Q 021247           92 NASIATL----EASPSEVWQMQFDPKGTTLAVAGGGSASVKLWDTATWNLIATLSIPRPEGLKPTDKSSSKKFVLSVAWS  167 (315)
Q Consensus        92 ~~~~~~~----~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~  167 (315)
                      +.....+    ......+..++++|++..+++ +..++.|..||..+..............       ....+...++|+
T Consensus       204 ~~~~~~~g~~~~~~~~~p~~iav~p~~g~lyv-~d~~~~I~~~d~~~~~~~~~~~~~~~g~-------~~~~P~~~ia~~  275 (409)
T 3hrp_A          204 GWAPTRIGQLGSTFSGKIGAVALDETEEWLYF-VDSNKNFGRFNVKTQEVTLIKQLELSGS-------LGTNPGPYLIYY  275 (409)
T ss_dssp             TTCEEEEEECCTTSCSCCCBCEECTTSSEEEE-ECTTCEEEEEETTTCCEEEEEECCCCSC-------CCCSSCCEEEEE
T ss_pred             CceeEEeeeccchhcCCcEEEEEeCCCCeEEE-EECCCcEEEEECCCCCEEEEecccccCC-------CCCCccccEEEe
Confidence            6554443    213456778999996666666 5568899999987654322111100000       000011289999


Q ss_pred             CC-CCEEEEecCCCcEEEEEcccceeeeeecCC---------------ccceEEEEEcCCCCcEEEEEe-CCCeEEEEeC
Q 021247          168 PD-GRRIACGSMDGTISVFDVTRAKFLHHLEGH---------------FMPVRSLVYSPVDPRVLFSAS-DDTHVHMYDA  230 (315)
Q Consensus       168 ~~-~~~l~~~s~dg~i~i~d~~~~~~~~~~~~~---------------~~~v~~~~~~~~~~~~l~s~~-~d~~i~~wd~  230 (315)
                      |+ +.++++...++.|+.||....  ...+.++               ......++++| +++++++-. .++.|+.|+.
T Consensus       276 p~~g~lyv~d~~~~~I~~~~~~g~--~~~~~g~~~~~g~~dg~~~~~~~~~P~gia~d~-dG~lyvad~~~~~~I~~~~~  352 (409)
T 3hrp_A          276 FVDSNFYMSDQNLSSVYKITPDGE--CEWFCGSATQKTVQDGLREEALFAQPNGMTVDE-DGNFYIVDGFKGYCLRKLDI  352 (409)
T ss_dssp             TTTTEEEEEETTTTEEEEECTTCC--EEEEEECTTCCSCBCEEGGGCBCSSEEEEEECT-TCCEEEEETTTTCEEEEEET
T ss_pred             CCCCEEEEEeCCCCEEEEEecCCC--EEEEEeCCCCCCcCCCcccccEeCCCeEEEEeC-CCCEEEEeCCCCCEEEEEEC
Confidence            95 666677778899999997643  2222221               23478999998 466888887 8899999997


Q ss_pred             CCCeeEEEeecc---------------cccEEEEEEcCCCCeEEEEeCCCcEEEEec
Q 021247          231 EGKSLVTAMSGH---------------ASWVLSVDASPDGAAITTGSSDRTVKLWDL  272 (315)
Q Consensus       231 ~~~~~~~~~~~~---------------~~~i~~~~~~~~~~~l~s~~~d~~i~iwd~  272 (315)
                      ..+.+. .+.++               -..+..++++|++.++++-..+++|+.+.+
T Consensus       353 ~~G~v~-~~~g~~~~~g~~~g~~~~~~~~~P~giavd~~g~lyVad~~n~~Ir~i~~  408 (409)
T 3hrp_A          353 LDGYVS-TVAGQVDVASQIDGTPLEATFNYPYDICYDGEGGYWIAEAWGKAIRKYAV  408 (409)
T ss_dssp             TTTEEE-EEEECTTCBSCCCBSTTTCCBSSEEEEEECSSSEEEEEESTTCEEEEEEE
T ss_pred             CCCEEE-EEeCCCCCCCcCCCChhceEeCCceEEEEcCCCCEEEEECCCCeEEEEEe
Confidence            666543 33333               246889999999888888888889988765

>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}

Probab=99.61  E-value=3.8e-13  Score=124.37  Aligned_cols=245  Identities=13%  Similarity=0.012  Sum_probs=156.4

Q ss_pred             hhccccceEEEEEeecCCCCCcEEEEeeC-CC----cEEEEcCCCCcceeeccccccceEEEEeCCCCCEEEEeeCCCe-
Q 021247           10 ENAHEESVWAVTWVPATETRPALLLTGSL-DE----TVKLWRPDDMQLERTNTGHCLGVVSVAAHPSGIIAASASLDSF-   83 (315)
Q Consensus        10 ~~~h~~~v~~v~~~~~~~~~~~~l~sgs~-d~----~v~~w~~~~~~~~~~~~~h~~~v~~~~~~~~g~~l~s~~~d~~-   83 (315)
                      ..+|+..+..++|+|+++    .|+.++. +|    .|++||.++++..... .+...+..+.|+|+ +.|+.++.|+. 
T Consensus       158 ~~~~~~~~~~~~~SPDG~----~la~~~~~~G~e~~~i~v~dl~tg~~~~~~-~~~~~~~~~~wspD-~~l~~~~~~~~~  231 (741)
T 1yr2_A          158 AKDGATALDAWAASDDGR----LLAYSVQDGGSDWRTVKFVGVADGKPLADE-LKWVKFSGLAWLGN-DALLYSRFAEPK  231 (741)
T ss_dssp             C----EEEEEEEECTTSS----EEEEEEEETTCSEEEEEEEETTTCCEEEEE-EEEEESCCCEESTT-SEEEEEECCCC-
T ss_pred             ccCCCEEEEeEEECCCCC----EEEEEEcCCCCceEEEEEEECCCCCCCCcc-CCCceeccEEEECC-CEEEEEEecCcc
Confidence            345656789999999876    3555443 34    5999999888764431 12222357889999 88887776654 


Q ss_pred             -------------EEEEECCCCce--eEEeeCC--cccEEEEEECCCCCeEEEEecC----CCeEEEEecCCc--ceeee
Q 021247           84 -------------VRVFDVDTNAS--IATLEAS--PSEVWQMQFDPKGTTLAVAGGG----SASVKLWDTATW--NLIAT  140 (315)
Q Consensus        84 -------------i~~w~~~~~~~--~~~~~~~--~~~v~~~~~~~~~~~~~~~~~~----d~~i~~~d~~~~--~~~~~  140 (315)
                                   |++|++.++..  ...+...  +..+..+.|+|+|+.++++...    ...|.+||+.++  +....
T Consensus       232 ~~~~~~~~~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~  311 (741)
T 1yr2_A          232 EGQAFQALNYNQTVWLHRLGTPQSADQPVFATPELPKRGHGASVSSDGRWVVITSSEGTDPVNTVHVARVTNGKIGPVTA  311 (741)
T ss_dssp             -------CCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECTTCSCCEEEEEEEETTEECCCEE
T ss_pred             cccccccCCCCCEEEEEECCCCchhCEEEeccCCCCeEEEEEEECCCCCEEEEEEEccCCCcceEEEEECCCCCCcccEE
Confidence                         89999987653  2333322  2357899999999988776542    358999998765  30222


Q ss_pred             ecCCCCCCCCCCccCCCCcceEEEEECCCCCEEEEecC----CCcEEEEEcccc--eeeeeecCCccceEEEEEcCCCCc
Q 021247          141 LSIPRPEGLKPTDKSSSKKFVLSVAWSPDGRRIACGSM----DGTISVFDVTRA--KFLHHLEGHFMPVRSLVYSPVDPR  214 (315)
Q Consensus       141 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~s~----dg~i~i~d~~~~--~~~~~~~~~~~~v~~~~~~~~~~~  214 (315)
                      +..+.             ...... ++|+|+.|+..+.    ++.|.+||+.++  .....+..+...+..+.+.  ++.
T Consensus       312 l~~~~-------------~~~~~~-~~~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~l~~~~~~~l~~~~~~--~~~  375 (741)
T 1yr2_A          312 LIPDL-------------KAQWDF-VDGVGDQLWFVSGDGAPLKKIVRVDLSGSTPRFDTVVPESKDNLESVGIA--GNR  375 (741)
T ss_dssp             EECSS-------------SSCEEE-EEEETTEEEEEECTTCTTCEEEEEECSSSSCEEEEEECCCSSEEEEEEEE--BTE
T ss_pred             ecCCC-------------CceEEE-EeccCCEEEEEECCCCCCCEEEEEeCCCCccccEEEecCCCCeEEEEEEE--CCE
Confidence            22111             112222 3488888877665    345999999774  3333344444556677776  567


Q ss_pred             EEEEEeCCCeEEEEeCC-CCeeEEEeec-ccccEEEEEEcCCCCeEE-E---EeCCCcEEEEecCccc
Q 021247          215 VLFSASDDTHVHMYDAE-GKSLVTAMSG-HASWVLSVDASPDGAAIT-T---GSSDRTVKLWDLNMRA  276 (315)
Q Consensus       215 ~l~s~~~d~~i~~wd~~-~~~~~~~~~~-~~~~i~~~~~~~~~~~l~-s---~~~d~~i~iwd~~~~~  276 (315)
                      ++++...|+..++|... .+.....+.. +.+.+..+.++|+++.++ +   ....++|++||+.+++
T Consensus       376 lv~~~~~dg~~~l~~~~~~g~~~~~l~~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~tg~  443 (741)
T 1yr2_A          376 LFASYIHDAKSQVLAFDLDGKPAGAVSLPGIGSASGLSGRPGDRHAYLSFSSFTQPATVLALDPATAK  443 (741)
T ss_dssp             EEEEEEETTEEEEEEEETTSCEEEECBCSSSCEEEEEECCBTCSCEEEEEEETTEEEEEEEEETTTTE
T ss_pred             EEEEEEECCEEEEEEEeCCCCceeeccCCCCeEEEEeecCCCCCEEEEEEcCCCCCCEEEEEECCCCc
Confidence            88888889876666433 2334444543 366788899999887555 2   2334789999998765

>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B

Probab=99.61  E-value=5.1e-12  Score=103.80  Aligned_cols=232  Identities=13%  Similarity=0.117  Sum_probs=154.2

Q ss_pred             hhhccccceEEEEEeecCCCCCcEEEEeeCCCcEEEEcCCCCcceeeccccccceEEEEeCCCCCEEEEeeCCCeEEEEE
Q 021247            9 VENAHEESVWAVTWVPATETRPALLLTGSLDETVKLWRPDDMQLERTNTGHCLGVVSVAAHPSGIIAASASLDSFVRVFD   88 (315)
Q Consensus         9 ~~~~h~~~v~~v~~~~~~~~~~~~l~sgs~d~~v~~w~~~~~~~~~~~~~h~~~v~~~~~~~~g~~l~s~~~d~~i~~w~   88 (315)
                      +...+..---+..|.|...   .++++...++.|..|++++.+....  .....+.++.++++|.++++.  ++.|.+||
T Consensus         7 ~~~~~~~~~Egp~w~~~~~---~l~~~d~~~~~i~~~d~~~~~~~~~--~~~~~~~~i~~~~dG~l~v~~--~~~l~~~d   79 (297)
T 3g4e_A            7 VLPENCRCGESPVWEEVSN---SLLFVDIPAKKVCRWDSFTKQVQRV--TMDAPVSSVALRQSGGYVATI--GTKFCALN   79 (297)
T ss_dssp             EECCCCSBEEEEEEETTTT---EEEEEETTTTEEEEEETTTCCEEEE--ECSSCEEEEEEBTTSSEEEEE--TTEEEEEE
T ss_pred             EeccCCccccCCeEECCCC---EEEEEECCCCEEEEEECCCCcEEEE--eCCCceEEEEECCCCCEEEEE--CCeEEEEE
Confidence            3344445566888988543   3677777889999999887654322  233568899999999966654  56899999


Q ss_pred             CCCCceeEEeeC----CcccEEEEEECCCCCeEEEEecC--------CCeEEEEecCC-cceeeeecCCCCCCCCCCccC
Q 021247           89 VDTNASIATLEA----SPSEVWQMQFDPKGTTLAVAGGG--------SASVKLWDTAT-WNLIATLSIPRPEGLKPTDKS  155 (315)
Q Consensus        89 ~~~~~~~~~~~~----~~~~v~~~~~~~~~~~~~~~~~~--------d~~i~~~d~~~-~~~~~~~~~~~~~~~~~~~~~  155 (315)
                      ..+++.......    ....+..++++|+|+.++.+...        ...-.+|.+.. ++.....              
T Consensus        80 ~~~g~~~~~~~~~~~~~~~~~~di~~d~dG~l~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~--------------  145 (297)
T 3g4e_A           80 WKEQSAVVLATVDNDKKNNRFNDGKVDPAGRYFAGTMAEETAPAVLERHQGALYSLFPDHHVKKYF--------------  145 (297)
T ss_dssp             TTTTEEEEEEECCTTCSSEEEEEEEECTTSCEEEEEEECCSBTTBCCTTCEEEEEECTTSCEEEEE--------------
T ss_pred             CCCCcEEEEEecCCCCCCCCCCCEEECCCCCEEEecCCcccccccccCCCcEEEEEECCCCEEEEe--------------
Confidence            987764333222    12357889999999854433221        12234444332 2211111              


Q ss_pred             CCCcceEEEEECCCCCEE-EEecCCCcEEEEEc--cccee-----eeeecCCccceEEEEEcCCCCcEEEEEeCCCeEEE
Q 021247          156 SSKKFVLSVAWSPDGRRI-ACGSMDGTISVFDV--TRAKF-----LHHLEGHFMPVRSLVYSPVDPRVLFSASDDTHVHM  227 (315)
Q Consensus       156 ~~~~~i~~~~~~~~~~~l-~~~s~dg~i~i~d~--~~~~~-----~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~~  227 (315)
                      ........++|+|+++.| ++.+.++.|..||+  .++..     ...+..+...+..+++.+ ++++.++....+.|.+
T Consensus       146 ~~~~~pngi~~spdg~~lyv~~~~~~~i~~~~~d~~~G~~~~~~~~~~~~~~~~~p~g~~~d~-~G~lwva~~~~~~v~~  224 (297)
T 3g4e_A          146 DQVDISNGLDWSLDHKIFYYIDSLSYSVDAFDYDLQTGQISNRRSVYKLEKEEQIPDGMCIDA-EGKLWVACYNGGRVIR  224 (297)
T ss_dssp             EEESBEEEEEECTTSCEEEEEEGGGTEEEEEEECTTTCCEEEEEEEEECCGGGCEEEEEEEBT-TSCEEEEEETTTEEEE
T ss_pred             eccccccceEEcCCCCEEEEecCCCCcEEEEeccCCCCcccCcEEEEECCCCCCCCCeeEECC-CCCEEEEEcCCCEEEE
Confidence            011235789999999866 55677889999987  34432     222333345678899987 5678888888889999


Q ss_pred             EeCCCCeeEEEeecccccEEEEEEc-CCCCeEEEEe
Q 021247          228 YDAEGKSLVTAMSGHASWVLSVDAS-PDGAAITTGS  262 (315)
Q Consensus       228 wd~~~~~~~~~~~~~~~~i~~~~~~-~~~~~l~s~~  262 (315)
                      ||.++++++..+..+...+++++|. |+++.|..++
T Consensus       225 ~d~~tG~~~~~i~~p~~~~t~~~f~g~d~~~L~vt~  260 (297)
T 3g4e_A          225 LDPVTGKRLQTVKLPVDKTTSCCFGGKNYSEMYVTC  260 (297)
T ss_dssp             ECTTTCCEEEEEECSSSBEEEEEEESGGGCEEEEEE
T ss_pred             EcCCCceEEEEEECCCCCceEEEEeCCCCCEEEEEc
Confidence            9999888888877776789999998 7877664444

>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*

Probab=99.60  E-value=1.1e-11  Score=104.94  Aligned_cols=245  Identities=12%  Similarity=0.021  Sum_probs=161.2

Q ss_pred             EEEEeecCCCCCcEEEEee----------CCCcEEEEcCCCCcceeecccc-------ccceEEEEeCCCCCEEEEeeC-
Q 021247           19 AVTWVPATETRPALLLTGS----------LDETVKLWRPDDMQLERTNTGH-------CLGVVSVAAHPSGIIAASASL-   80 (315)
Q Consensus        19 ~v~~~~~~~~~~~~l~sgs----------~d~~v~~w~~~~~~~~~~~~~h-------~~~v~~~~~~~~g~~l~s~~~-   80 (315)
                      .++++|+++    .++.+.          .++.|.+||..+.+....+.--       ......+.++|+|++|+.+.. 
T Consensus        70 ~i~~spDg~----~lyv~n~~~~~~~rg~~~~~v~viD~~t~~~~~~i~~~~~~~~~~g~~p~~~~~spDG~~l~v~n~~  145 (373)
T 2mad_H           70 NPVAAHSGS----EFALASTSFSRIAKGKRTDYVEVFDPVTFLPIADIELPDAPRFDVGPYSWMNANTPNNADLLFFQFA  145 (373)
T ss_pred             CeEECCCCC----EEEEEeccccccccCCCCCeEEEEECCCCcEEEEEECCCccccccCCCccceEECCCCCEEEEEecC
Confidence            888999876    355554          3688999999877765543211       123558899999999887764 


Q ss_pred             -CCeEEEEECCCCceeEE-eeCCcccEEEEEECCCCCeEEEEecCCCeEEEEecCCcceeeeecCCCCCCCCCCccCCCC
Q 021247           81 -DSFVRVFDVDTNASIAT-LEASPSEVWQMQFDPKGTTLAVAGGGSASVKLWDTATWNLIATLSIPRPEGLKPTDKSSSK  158 (315)
Q Consensus        81 -d~~i~~w~~~~~~~~~~-~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~  158 (315)
                       +..|.++| .+++.+.. +.... .   +.+.|.++..+++...|+.+.++|. +++..........  .     ....
T Consensus       146 ~~~~v~viD-~t~~~~~~~i~~~~-~---~~~~~~~~~~~~~~~~dg~~~~vd~-~g~~~~~~~~~~~--~-----~~~~  212 (373)
T 2mad_H          146 AGPAVGLVV-QGGSSDDQLLSSPT-C---YHIHPGAPSTFYLLCAQGGLAKTDH-AGGAAGAGLVGAM--L-----TAAQ  212 (373)
T ss_pred             CCCeEEEEE-CCCCEEeEEcCCCc-e---EEEEeCCCceEEEEcCCCCEEEEEC-CCcEEEEEecccc--c-----cCCc
Confidence             57899999 98888777 54322 1   3445666556666778999999999 7766633211000  0     0000


Q ss_pred             cceEEEEECCCCCEEEEecCCCcEEEEEcccce--eeeeecCC----------ccceEEEEEcCCCCcEEEEEe------
Q 021247          159 KFVLSVAWSPDGRRIACGSMDGTISVFDVTRAK--FLHHLEGH----------FMPVRSLVYSPVDPRVLFSAS------  220 (315)
Q Consensus       159 ~~i~~~~~~~~~~~l~~~s~dg~i~i~d~~~~~--~~~~~~~~----------~~~v~~~~~~~~~~~~l~s~~------  220 (315)
                      .......+.+++..++..+..+.+.+.|+....  .+..+...          ......+.++|++.+++++..      
T Consensus       213 p~~~~~~~~~~~~~~~~~~~~~~v~vid~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~~~~s~d~~~lyV~~~~~~~~~  292 (373)
T 2mad_H          213 NLLTQPAQANKSGRIVWPVYSGKILQADISAAGATNKAPIDALSGGRKADTWRPGGWQQVAYLKSSDGIYLLTSEQSAWK  292 (373)
T ss_pred             ceeecceeEecCCEEEEEcCCceEEEEeccCCcceEeeeeeecCCcccccceecCceEeEEECCCCCEEEEEeccCCccc
Confidence            112234556665554444467899999986542  22222110          122344778885555555443      


Q ss_pred             ---CCCeEEEEeCCCCeeEEEeecccccEEEEEEcCCCC-eEEEEe-CCCcEEEEecCccceehcc
Q 021247          221 ---DDTHVHMYDAEGKSLVTAMSGHASWVLSVDASPDGA-AITTGS-SDRTVKLWDLNMRAAMQSM  281 (315)
Q Consensus       221 ---~d~~i~~wd~~~~~~~~~~~~~~~~i~~~~~~~~~~-~l~s~~-~d~~i~iwd~~~~~~~~~~  281 (315)
                         ..+.|.++|.++.+.+..+.. ......++|+|+|+ .++++. .++.|.++|+.+++.+.++
T Consensus       293 ~~~~~~~V~VID~~t~~vv~~i~~-g~~p~~i~~s~Dg~~~l~v~~~~~~~V~ViD~~t~~vv~~i  357 (373)
T 2mad_H          293 LHAAAKEVTSVTGLVGQTSSQISL-GHDVDAISVAQDGGPDLYALSAGTEVLHIYDAGAGDQDQST  357 (373)
T ss_pred             ccCCCCeEEEEECCCCEEEEEEEC-CCCcCeEEECCCCCeEEEEEcCCCCeEEEEECCCCCEEeee
Confidence               135799999999988887753 33578999999999 777776 5899999999998888773

>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1

Probab=99.58  E-value=1.7e-11  Score=102.05  Aligned_cols=224  Identities=14%  Similarity=0.063  Sum_probs=148.6

Q ss_pred             EEEEeCCC-CCEEEEeeCCCeEEEEECCCCceeEEeeCCcccEEEEEECCCCCeEEEEecCCCeEEEEecCCcceeeeec
Q 021247           64 VSVAAHPS-GIIAASASLDSFVRVFDVDTNASIATLEASPSEVWQMQFDPKGTTLAVAGGGSASVKLWDTATWNLIATLS  142 (315)
Q Consensus        64 ~~~~~~~~-g~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~  142 (315)
                      ....|+|+ +.++++...++.|..||..+++.. .+. .+..+.++.++|+++.++ +.  ...|.+||..+++......
T Consensus        52 egp~~~~~~~~l~~~d~~~~~i~~~d~~~~~~~-~~~-~~~~v~~i~~~~dg~l~v-~~--~~gl~~~d~~~g~~~~~~~  126 (326)
T 2ghs_A           52 EGPTFDPASGTAWWFNILERELHELHLASGRKT-VHA-LPFMGSALAKISDSKQLI-AS--DDGLFLRDTATGVLTLHAE  126 (326)
T ss_dssp             EEEEEETTTTEEEEEEGGGTEEEEEETTTTEEE-EEE-CSSCEEEEEEEETTEEEE-EE--TTEEEEEETTTCCEEEEEC
T ss_pred             cCCeEeCCCCEEEEEECCCCEEEEEECCCCcEE-EEE-CCCcceEEEEeCCCeEEE-EE--CCCEEEEECCCCcEEEEee
Confidence            45678886 456677777899999999876543 333 245788999999987554 33  3459999987766433221


Q ss_pred             CCCCCCCCCCccCCCCcceEEEEECCCCCEEEEecC------CCcEEEEEcccceeeeeecCCccceEEEEEcCCCCcEE
Q 021247          143 IPRPEGLKPTDKSSSKKFVLSVAWSPDGRRIACGSM------DGTISVFDVTRAKFLHHLEGHFMPVRSLVYSPVDPRVL  216 (315)
Q Consensus       143 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~s~------dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l  216 (315)
                      ...         ......+..++++|+|+++++...      .+.|..+|  +++... +..+......++|+|++..++
T Consensus       127 ~~~---------~~~~~~~~~i~~d~~G~l~v~~~~~~~~~~~~~l~~~~--~g~~~~-~~~~~~~~~~i~~s~dg~~ly  194 (326)
T 2ghs_A          127 LES---------DLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVA--KGKVTK-LFADISIPNSICFSPDGTTGY  194 (326)
T ss_dssp             SST---------TCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEE--TTEEEE-EEEEESSEEEEEECTTSCEEE
T ss_pred             CCC---------CCCCCCCCCEEECCCCCEEEEeCCCcCCCCceEEEEEe--CCcEEE-eeCCCcccCCeEEcCCCCEEE
Confidence            110         011235789999999986665432      24566666  444332 222334567899998554555


Q ss_pred             EEEeCCCeEEEEeCC--CC-ee-----EEEeecccccEEEEEEcCCCCeEEEEeCCCcEEEEecCccceehcccccccce
Q 021247          217 FSASDDTHVHMYDAE--GK-SL-----VTAMSGHASWVLSVDASPDGAAITTGSSDRTVKLWDLNMRAAMQSMTNHTDQV  288 (315)
Q Consensus       217 ~s~~~d~~i~~wd~~--~~-~~-----~~~~~~~~~~i~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v  288 (315)
                      ++.+.++.|.+||..  ++ .+     ...+......+..+.++++|.+.++...++.|.+|+. .++.+..+..+...+
T Consensus       195 v~~~~~~~I~~~d~~~~~Gl~~~~~~~~~~~~~~~~~p~gi~~d~~G~lwva~~~~~~v~~~d~-~g~~~~~i~~~~~~~  273 (326)
T 2ghs_A          195 FVDTKVNRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGHIWNARWGEGAVDRYDT-DGNHIARYEVPGKQT  273 (326)
T ss_dssp             EEETTTCEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSCEEEEEETTTEEEEECT-TCCEEEEEECSCSBE
T ss_pred             EEECCCCEEEEEEcccccCCcccCceEEEECCCCCCCCCeeEECCCCCEEEEEeCCCEEEEECC-CCCEEEEEECCCCCc
Confidence            666678899999975  44 21     2222233455778999999987777767788999998 466666666666679


Q ss_pred             EEEEEe-eCCCEEEEEeC
Q 021247          289 WGVSFR-PLGGRVVSVSD  305 (315)
Q Consensus       289 ~~~~~s-~~~~~l~s~~~  305 (315)
                      ++++|+ |+++.|+.++.
T Consensus       274 ~~~af~g~d~~~L~vt~~  291 (326)
T 2ghs_A          274 TCPAFIGPDASRLLVTSA  291 (326)
T ss_dssp             EEEEEESTTSCEEEEEEB
T ss_pred             EEEEEecCCCCEEEEEec
Confidence            999999 88887754443

>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*

Probab=99.56  E-value=2.3e-13  Score=114.67  Aligned_cols=184  Identities=13%  Similarity=0.081  Sum_probs=131.3

Q ss_pred             cEEEEEECCCCCeEEEEecCCCeEEEEecCCcceeeeecCCCCCCCCCCccCCCCcceEEEEECCCCCEEEEecCCCcEE
Q 021247          104 EVWQMQFDPKGTTLAVAGGGSASVKLWDTATWNLIATLSIPRPEGLKPTDKSSSKKFVLSVAWSPDGRRIACGSMDGTIS  183 (315)
Q Consensus       104 ~v~~~~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~s~dg~i~  183 (315)
                      ++..+++++....++ +|+.+ .+.+|++...+....   .......+........ |+.++|  ++++|+++ .++.|+
T Consensus        39 ~~nlLais~~~gll~-a~~~~-~l~v~~~~~l~~~~~---~~~~~~~~~~~~~lp~-V~~l~f--d~~~L~v~-~~~~l~  109 (388)
T 1xip_A           39 SLQNLDISNSKSLFV-AASGS-KAVVGELQLLRDHIT---SDSTPLTFKWEKEIPD-VIFVCF--HGDQVLVS-TRNALY  109 (388)
T ss_dssp             CCBCEEEETTTTEEE-EEETT-EEEEEEHHHHHHHHH---SSSCCCCCSEEEECTT-EEEEEE--ETTEEEEE-ESSEEE
T ss_pred             cccEEEEcCCCCEEE-EeCCC-EEEEEEhhHhhhhhc---cccccccceEEeeCCC-eeEEEE--CCCEEEEE-cCCcEE
Confidence            578889999888654 55554 677798764321000   0001111111112334 899999  88999998 889999


Q ss_pred             EEEcccceeeeeecCCccceEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCeeEEEeecccccEEEEEEcCCCCeEEEEeC
Q 021247          184 VFDVTRAKFLHHLEGHFMPVRSLVYSPVDPRVLFSASDDTHVHMYDAEGKSLVTAMSGHASWVLSVDASPDGAAITTGSS  263 (315)
Q Consensus       184 i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~  263 (315)
                      +||+.+.........|..++.++.+.+.  . ++++..||.|.+||++.+....    +...|.+++|+|+|  ++.|..
T Consensus       110 v~dv~sl~~~~~~~~~~~~v~~i~~~~p--~-~av~~~dG~L~v~dl~~~~~~~----~~~~Vs~v~WSpkG--~~vg~~  180 (388)
T 1xip_A          110 SLDLEELSEFRTVTSFEKPVFQLKNVNN--T-LVILNSVNDLSALDLRTKSTKQ----LAQNVTSFDVTNSQ--LAVLLK  180 (388)
T ss_dssp             EEESSSTTCEEEEEECSSCEEEEEECSS--E-EEEEETTSEEEEEETTTCCEEE----EEESEEEEEECSSE--EEEEET
T ss_pred             EEEchhhhccCccceeecceeeEEecCC--C-EEEEECCCCEEEEEccCCcccc----ccCCceEEEEcCCc--eEEEEc
Confidence            9999776655556667778888887753  2 8888999999999999776543    34579999999999  678999


Q ss_pred             CCcEEEEecCccce--ehcc------c---ccccceEEEEEeeCCCEEEEEeC
Q 021247          264 DRTVKLWDLNMRAA--MQSM------T---NHTDQVWGVSFRPLGGRVVSVSD  305 (315)
Q Consensus       264 d~~i~iwd~~~~~~--~~~~------~---~~~~~v~~~~~s~~~~~l~s~~~  305 (315)
                      ||++++|+....+.  .+++      .   +|...|.++.|.+++.++++-+.
T Consensus       181 dg~i~~~~~~~~~~~~k~~I~~Pp~~~~~~~~~~~V~sI~wl~~~~flv~y~~  233 (388)
T 1xip_A          181 DRSFQSFAWRNGEMEKQFEFSLPSELEELPVEEYSPLSVTILSPQDFLAVFGN  233 (388)
T ss_dssp             TSCEEEEEEETTEEEEEEEECCCHHHHTSCTTTSEEEEEEESSSSEEEEEEEC
T ss_pred             CCcEEEEcCCCccccccceecCCcccccccCCCeeEEEEEEecCCeEEEEEcC
Confidence            99999998876553  3333      2   36778999999999988887443

>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1

Probab=99.56  E-value=3.1e-11  Score=100.47  Aligned_cols=222  Identities=11%  Similarity=0.026  Sum_probs=145.1

Q ss_pred             ceEEEEEeecCCCCCcEEEEeeCCCcEEEEcCCCCcceeeccccccceEEEEeCCCCCEEEEeeCCCeEEEEECCCCcee
Q 021247           16 SVWAVTWVPATETRPALLLTGSLDETVKLWRPDDMQLERTNTGHCLGVVSVAAHPSGIIAASASLDSFVRVFDVDTNASI   95 (315)
Q Consensus        16 ~v~~v~~~~~~~~~~~~l~sgs~d~~v~~w~~~~~~~~~~~~~h~~~v~~~~~~~~g~~l~s~~~d~~i~~w~~~~~~~~   95 (315)
                      -..+..|.|+..   .++++...++.|..|+.++.+.....  ....+.++.++++|.++++. . ..|.+||..+++..
T Consensus        50 ~~egp~~~~~~~---~l~~~d~~~~~i~~~d~~~~~~~~~~--~~~~v~~i~~~~dg~l~v~~-~-~gl~~~d~~~g~~~  122 (326)
T 2ghs_A           50 LGEGPTFDPASG---TAWWFNILERELHELHLASGRKTVHA--LPFMGSALAKISDSKQLIAS-D-DGLFLRDTATGVLT  122 (326)
T ss_dssp             BEEEEEEETTTT---EEEEEEGGGTEEEEEETTTTEEEEEE--CSSCEEEEEEEETTEEEEEE-T-TEEEEEETTTCCEE
T ss_pred             CCcCCeEeCCCC---EEEEEECCCCEEEEEECCCCcEEEEE--CCCcceEEEEeCCCeEEEEE-C-CCEEEEECCCCcEE
Confidence            456788988643   36777778899999998776543221  23468899999999887754 3 45999999877653


Q ss_pred             EEeeCC----cccEEEEEECCCCCeEEEEecC-----CCeEEEEecCCcceeeeecCCCCCCCCCCccCCCCcceEEEEE
Q 021247           96 ATLEAS----PSEVWQMQFDPKGTTLAVAGGG-----SASVKLWDTATWNLIATLSIPRPEGLKPTDKSSSKKFVLSVAW  166 (315)
Q Consensus        96 ~~~~~~----~~~v~~~~~~~~~~~~~~~~~~-----d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~  166 (315)
                      ......    ...+..+.++|+|+.++.+...     .+.|..+|  +++......              .......++|
T Consensus       123 ~~~~~~~~~~~~~~~~i~~d~~G~l~v~~~~~~~~~~~~~l~~~~--~g~~~~~~~--------------~~~~~~~i~~  186 (326)
T 2ghs_A          123 LHAELESDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVA--KGKVTKLFA--------------DISIPNSICF  186 (326)
T ss_dssp             EEECSSTTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEE--TTEEEEEEE--------------EESSEEEEEE
T ss_pred             EEeeCCCCCCCCCCCCEEECCCCCEEEEeCCCcCCCCceEEEEEe--CCcEEEeeC--------------CCcccCCeEE
Confidence            322211    2357899999999854332221     24555555  333221110              0112568999


Q ss_pred             CCCCCEEE-EecCCCcEEEEEcc--cc-ee-----eeeecCCccceEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCeeEE
Q 021247          167 SPDGRRIA-CGSMDGTISVFDVT--RA-KF-----LHHLEGHFMPVRSLVYSPVDPRVLFSASDDTHVHMYDAEGKSLVT  237 (315)
Q Consensus       167 ~~~~~~l~-~~s~dg~i~i~d~~--~~-~~-----~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~  237 (315)
                      +|+++.++ +.+.++.|.+||+.  ++ ..     ...+......+..+.+.+ ++.++++...++.|.+||.. ++.+.
T Consensus       187 s~dg~~lyv~~~~~~~I~~~d~~~~~Gl~~~~~~~~~~~~~~~~~p~gi~~d~-~G~lwva~~~~~~v~~~d~~-g~~~~  264 (326)
T 2ghs_A          187 SPDGTTGYFVDTKVNRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDA-EGHIWNARWGEGAVDRYDTD-GNHIA  264 (326)
T ss_dssp             CTTSCEEEEEETTTCEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECT-TSCEEEEEETTTEEEEECTT-CCEEE
T ss_pred             cCCCCEEEEEECCCCEEEEEEcccccCCcccCceEEEECCCCCCCCCeeEECC-CCCEEEEEeCCCEEEEECCC-CCEEE
Confidence            99998764 55667899999985  54 21     222323334567888887 56677777677899999984 55666


Q ss_pred             EeecccccEEEEEEc-CCCCeEEEEe
Q 021247          238 AMSGHASWVLSVDAS-PDGAAITTGS  262 (315)
Q Consensus       238 ~~~~~~~~i~~~~~~-~~~~~l~s~~  262 (315)
                      .+..+...+.+++|+ |++..|+.++
T Consensus       265 ~i~~~~~~~~~~af~g~d~~~L~vt~  290 (326)
T 2ghs_A          265 RYEVPGKQTTCPAFIGPDASRLLVTS  290 (326)
T ss_dssp             EEECSCSBEEEEEEESTTSCEEEEEE
T ss_pred             EEECCCCCcEEEEEecCCCCEEEEEe
Confidence            666666679999998 8877664444

>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}

Probab=99.54  E-value=8.8e-12  Score=102.75  Aligned_cols=231  Identities=12%  Similarity=0.034  Sum_probs=149.9

Q ss_pred             cceEEEEeCCCCC-EEEEeeCCCeEEEEECCCCceeEEeeCCcccEEEEEECCCCCeEEEEecCCCeEEEEecCCcceee
Q 021247           61 LGVVSVAAHPSGI-IAASASLDSFVRVFDVDTNASIATLEASPSEVWQMQFDPKGTTLAVAGGGSASVKLWDTATWNLIA  139 (315)
Q Consensus        61 ~~v~~~~~~~~g~-~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~  139 (315)
                      .......|+++|+ ++++...++.|..|+.. +. ...+......+..+.++++++ ++++...++.|.+||.. ++...
T Consensus        45 ~~~egp~~~~~g~~l~~~d~~~~~i~~~~~~-g~-~~~~~~~~~~~~gl~~d~dG~-l~v~~~~~~~v~~~~~~-g~~~~  120 (305)
T 3dr2_A           45 TWSEGPAWWEAQRTLVWSDLVGRRVLGWRED-GT-VDVLLDATAFTNGNAVDAQQR-LVHCEHGRRAITRSDAD-GQAHL  120 (305)
T ss_dssp             SSEEEEEEEGGGTEEEEEETTTTEEEEEETT-SC-EEEEEESCSCEEEEEECTTSC-EEEEETTTTEEEEECTT-SCEEE
T ss_pred             cCccCCeEeCCCCEEEEEECCCCEEEEEeCC-CC-EEEEeCCCCccceeeECCCCC-EEEEECCCCEEEEECCC-CCEEE
Confidence            3456778899998 67777788999999984 43 344545566788999999988 44555566789999875 44322


Q ss_pred             eecCCCCCCCCCCccCCCCcceEEEEECCCCCEEEE----ecC-------------CCcEEEEEcccceeeeeecCCccc
Q 021247          140 TLSIPRPEGLKPTDKSSSKKFVLSVAWSPDGRRIAC----GSM-------------DGTISVFDVTRAKFLHHLEGHFMP  202 (315)
Q Consensus       140 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~----~s~-------------dg~i~i~d~~~~~~~~~~~~~~~~  202 (315)
                       +.... .+       .....+..++++++|+..++    |+.             .+.|+.+|..+++.....  ....
T Consensus       121 -~~~~~-~~-------~~~~~~~~i~~d~dG~l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~~g~~~~~~--~~~~  189 (305)
T 3dr2_A          121 -LVGRY-AG-------KRLNSPNDLIVARDGAIWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPDGSPLQRMA--DLDH  189 (305)
T ss_dssp             -EECEE-TT-------EECSCCCCEEECTTSCEEEECCSGGGSCGGGSCCCCCSSSCEEEEEECSSSCCCEEEE--EESS
T ss_pred             -EEecc-CC-------CccCCCCCEEECCCCCEEEeCcCCCccccccccccccccCCCeEEEEcCCCCcEEEEe--cCCC
Confidence             21100 00       00122567999999998876    442             356888887666543332  3345


Q ss_pred             eEEEEEcCCCCcEEEEEeCC------CeEEEEeCCCCeeE--EEe-ecccccEEEEEEcCCCCeEEEEeCCCcEEEEecC
Q 021247          203 VRSLVYSPVDPRVLFSASDD------THVHMYDAEGKSLV--TAM-SGHASWVLSVDASPDGAAITTGSSDRTVKLWDLN  273 (315)
Q Consensus       203 v~~~~~~~~~~~~l~s~~~d------~~i~~wd~~~~~~~--~~~-~~~~~~i~~~~~~~~~~~l~s~~~d~~i~iwd~~  273 (315)
                      ...++|+|+ ++.|+.+...      +.|.+|+.....+.  ..+ ....+.+..+.++++|++.+ +..+ .|.+|+..
T Consensus       190 p~gl~~spd-g~~lyv~~~~~~~~~~~~i~~~~~~~~~l~~~~~~~~~~~~~pdgi~~d~~G~lwv-~~~~-gv~~~~~~  266 (305)
T 3dr2_A          190 PNGLAFSPD-EQTLYVSQTPEQGHGSVEITAFAWRDGALHDRRHFASVPDGLPDGFCVDRGGWLWS-SSGT-GVCVFDSD  266 (305)
T ss_dssp             EEEEEECTT-SSEEEEEECCC---CCCEEEEEEEETTEEEEEEEEECCSSSCCCSEEECTTSCEEE-CCSS-EEEEECTT
T ss_pred             CcceEEcCC-CCEEEEEecCCcCCCCCEEEEEEecCCCccCCeEEEECCCCCCCeEEECCCCCEEE-ecCC-cEEEECCC
Confidence            678999995 4544444433      78999998654311  111 11233455688999998544 4444 49999984


Q ss_pred             ccceehcccccccceEEEEEeeCCCEEEEEeCCCcEEE
Q 021247          274 MRAAMQSMTNHTDQVWGVSFRPLGGRVVSVSDDKSISL  311 (315)
Q Consensus       274 ~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~i~i  311 (315)
                       ++.+..+..+. .+.+++|+|+++.|..++.++..++
T Consensus       267 -g~~~~~~~~~~-~~~~~~f~~d~~~L~it~~~~l~~~  302 (305)
T 3dr2_A          267 -GQLLGHIPTPG-TASNCTFDQAQQRLFITGGPCLWML  302 (305)
T ss_dssp             -SCEEEEEECSS-CCCEEEECTTSCEEEEEETTEEEEE
T ss_pred             -CCEEEEEECCC-ceeEEEEeCCCCEEEEEcCCeEEEE
Confidence             55665555444 5889999999998888877655444

>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*

Probab=99.54  E-value=1.1e-12  Score=120.39  Aligned_cols=239  Identities=12%  Similarity=0.079  Sum_probs=152.6

Q ss_pred             ccccceEEEEeCCCCCEEE-----EeeCCCeEEEEECCCCceeEE-eeCCcccEEEEEECCCCCeEEEEecCC-------
Q 021247           58 GHCLGVVSVAAHPSGIIAA-----SASLDSFVRVFDVDTNASIAT-LEASPSEVWQMQFDPKGTTLAVAGGGS-------  124 (315)
Q Consensus        58 ~h~~~v~~~~~~~~g~~l~-----s~~~d~~i~~w~~~~~~~~~~-~~~~~~~v~~~~~~~~~~~~~~~~~~d-------  124 (315)
                      +|...+..+.++|+|++++     .|+.+..|++||+.+++.+.. +...  ....++|+ +++.++++...+       
T Consensus       126 ~~~~~l~~~~~SpDg~~lAy~~~~~G~~~~~i~v~dl~tg~~~~~~~~~~--k~~~~~Ws-Dg~~l~y~~~~~~~~~~~~  202 (693)
T 3iuj_A          126 DGTTALDQLSFSRDGRILAYSLSLAGSDWREIHLMDVESKQPLETPLKDV--KFSGISWL-GNEGFFYSSYDKPDGSELS  202 (693)
T ss_dssp             TSCCEEEEEEECTTSSEEEEEEECSSCCEEEEEEEETTTCSEEEEEEEEE--ESCCCEEE-TTTEEEEEESSCCC-----
T ss_pred             CCcEEEEEEEECCCCCEEEEEEecCCCceEEEEEEECCCCCCCccccCCc--eeccEEEe-CCCEEEEEEecCccccccc
Confidence            3556788899999999887     233346799999999886543 2111  12466899 888887765442       


Q ss_pred             -----CeEEEEecCCcce--eeeecCCCCCCCCCCccCC-CCcceEEEEECCCCCEEEEec----CCCcEEEEEcccce-
Q 021247          125 -----ASVKLWDTATWNL--IATLSIPRPEGLKPTDKSS-SKKFVLSVAWSPDGRRIACGS----MDGTISVFDVTRAK-  191 (315)
Q Consensus       125 -----~~i~~~d~~~~~~--~~~~~~~~~~~~~~~~~~~-~~~~i~~~~~~~~~~~l~~~s----~dg~i~i~d~~~~~-  191 (315)
                           ..|++|++.+...  ...+..           .. +..+...+.|+|+|++|+...    ..+.|+++|+.++. 
T Consensus       203 ~~~~~~~v~~~~lgt~~~~~~~v~~~-----------~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~~~~  271 (693)
T 3iuj_A          203 ARTDQHKVYFHRLGTAQEDDRLVFGA-----------IPAQHHRYVGATVTEDDRFLLISAANSTSGNRLYVKDLSQENA  271 (693)
T ss_dssp             --CCCCEEEEEETTSCGGGCEEEESC-----------SGGGCCSEEEEEECTTSCEEEEEEESSSSCCEEEEEETTSTTC
T ss_pred             ccCCCcEEEEEECCCCcccceEEEec-----------CCCCCeEEEEEEEcCCCCEEEEEEccCCCCcEEEEEECCCCCC
Confidence                 3588888876432  111110           11 123467899999999885433    23589999997653 


Q ss_pred             eeeeecCCccceEEEEEcCCCCcEEEEEeCC---CeEEEEeCCCCee--EEEeecccccEEEEEEcCCCCeEEEEeCCC-
Q 021247          192 FLHHLEGHFMPVRSLVYSPVDPRVLFSASDD---THVHMYDAEGKSL--VTAMSGHASWVLSVDASPDGAAITTGSSDR-  265 (315)
Q Consensus       192 ~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d---~~i~~wd~~~~~~--~~~~~~~~~~i~~~~~~~~~~~l~s~~~d~-  265 (315)
                      ....+..+....... +++.++.+++....+   +.|..+|+.++..  ...+..|...+.  .|+++++.|+....++ 
T Consensus       272 ~~~~l~~~~~~~~~~-~~~~g~~l~~~t~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~--~~s~~g~~lv~~~~~~g  348 (693)
T 3iuj_A          272 PLLTVQGDLDADVSL-VDNKGSTLYLLTNRDAPNRRLVTVDAANPGPAHWRDLIPERQQVL--TVHSGSGYLFAEYMVDA  348 (693)
T ss_dssp             CCEEEECSSSSCEEE-EEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSSCE--EEEEETTEEEEEEEETT
T ss_pred             ceEEEeCCCCceEEE-EeccCCEEEEEECCCCCCCEEEEEeCCCCCccccEEEecCCCCEE--EEEEECCEEEEEEEECC
Confidence            334444455444444 556566677666554   6899999887543  234555655554  8888888776655444 


Q ss_pred             --cEEEEecCccceehccc-ccccceEEEEEeeCCCEEEEEeCC----CcEEEeec
Q 021247          266 --TVKLWDLNMRAAMQSMT-NHTDQVWGVSFRPLGGRVVSVSDD----KSISLYEY  314 (315)
Q Consensus       266 --~i~iwd~~~~~~~~~~~-~~~~~v~~~~~s~~~~~l~s~~~d----~~i~i~~~  314 (315)
                        .|++|++..+. ...+. .....+..+.++|++..|+....+    ++|..||+
T Consensus       349 ~~~l~~~d~~g~~-~~~l~~p~~~~~~~~~~~~d~~~l~~~~ss~~tP~~l~~~d~  403 (693)
T 3iuj_A          349 TARVEQFDYEGKR-VREVALPGLGSVSGFNGKHDDPALYFGFENYAQPPTLYRFEP  403 (693)
T ss_dssp             EEEEEEECTTSCE-EEEECCSSSSEEEECCCCTTCSCEEEEEECSSSCCEEEEECT
T ss_pred             eeEEEEEECCCCe-eEEeecCCCceEEeeecCCCCCEEEEEecCCCCCCEEEEEEC
Confidence              68899987443 33332 233467778888888877655444    67777764

>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*

Probab=99.51  E-value=1.5e-12  Score=109.71  Aligned_cols=171  Identities=13%  Similarity=0.031  Sum_probs=124.6

Q ss_pred             ceEEEEEeecCCCCCcEEEEeeCCCcEEEEcCCCCc---------cee-eccccccceEEEEeCCCCCEEEEeeCCCeEE
Q 021247           16 SVWAVTWVPATETRPALLLTGSLDETVKLWRPDDMQ---------LER-TNTGHCLGVVSVAAHPSGIIAASASLDSFVR   85 (315)
Q Consensus        16 ~v~~v~~~~~~~~~~~~l~sgs~d~~v~~w~~~~~~---------~~~-~~~~h~~~v~~~~~~~~g~~l~s~~~d~~i~   85 (315)
                      .++.+++++...    ++++|+.++ +++|+.+...         ... ....+.. |..++|  ++.+|+.+ .++.|+
T Consensus        39 ~~nlLais~~~g----ll~a~~~~~-l~v~~~~~l~~~~~~~~~~~~~~~~~~lp~-V~~l~f--d~~~L~v~-~~~~l~  109 (388)
T 1xip_A           39 SLQNLDISNSKS----LFVAASGSK-AVVGELQLLRDHITSDSTPLTFKWEKEIPD-VIFVCF--HGDQVLVS-TRNALY  109 (388)
T ss_dssp             CCBCEEEETTTT----EEEEEETTE-EEEEEHHHHHHHHHSSSCCCCCSEEEECTT-EEEEEE--ETTEEEEE-ESSEEE
T ss_pred             cccEEEEcCCCC----EEEEeCCCE-EEEEEhhHhhhhhccccccccceEEeeCCC-eeEEEE--CCCEEEEE-cCCcEE
Confidence            689999988654    788888875 5559743221         111 1223445 999999  88898888 889999


Q ss_pred             EEECCCCceeEEeeCCcccEEEEEECCCCCeEEEEecCCCeEEEEecCCcceeeeecCCCCCCCCCCccCCCCcceEEEE
Q 021247           86 VFDVDTNASIATLEASPSEVWQMQFDPKGTTLAVAGGGSASVKLWDTATWNLIATLSIPRPEGLKPTDKSSSKKFVLSVA  165 (315)
Q Consensus        86 ~w~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~  165 (315)
                      +||+.+.........+..++..+.+.+.  . ++.+..||++.+||+.+++....                 ...|++++
T Consensus       110 v~dv~sl~~~~~~~~~~~~v~~i~~~~p--~-~av~~~dG~L~v~dl~~~~~~~~-----------------~~~Vs~v~  169 (388)
T 1xip_A          110 SLDLEELSEFRTVTSFEKPVFQLKNVNN--T-LVILNSVNDLSALDLRTKSTKQL-----------------AQNVTSFD  169 (388)
T ss_dssp             EEESSSTTCEEEEEECSSCEEEEEECSS--E-EEEEETTSEEEEEETTTCCEEEE-----------------EESEEEEE
T ss_pred             EEEchhhhccCccceeecceeeEEecCC--C-EEEEECCCCEEEEEccCCccccc-----------------cCCceEEE
Confidence            9999887665566666677888777654  2 45567899999999987654321                 12389999


Q ss_pred             ECCCCCEEEEecCCCcEEEEEccccee--eeee------c---CCccceEEEEEcCCCCcEEEE
Q 021247          166 WSPDGRRIACGSMDGTISVFDVTRAKF--LHHL------E---GHFMPVRSLVYSPVDPRVLFS  218 (315)
Q Consensus       166 ~~~~~~~l~~~s~dg~i~i~d~~~~~~--~~~~------~---~~~~~v~~~~~~~~~~~~l~s  218 (315)
                      |+|+|  ++.|..||.+++|+......  ...+      .   +|...|.++.|.+ +..++++
T Consensus       170 WSpkG--~~vg~~dg~i~~~~~~~~~~~~k~~I~~Pp~~~~~~~~~~~V~sI~wl~-~~~flv~  230 (388)
T 1xip_A          170 VTNSQ--LAVLLKDRSFQSFAWRNGEMEKQFEFSLPSELEELPVEEYSPLSVTILS-PQDFLAV  230 (388)
T ss_dssp             ECSSE--EEEEETTSCEEEEEEETTEEEEEEEECCCHHHHTSCTTTSEEEEEEESS-SSEEEEE
T ss_pred             EcCCc--eEEEEcCCcEEEEcCCCccccccceecCCcccccccCCCeeEEEEEEec-CCeEEEE
Confidence            99999  67888999999999877664  4444      2   3678899999997 5556654

>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}

Probab=99.50  E-value=1.2e-11  Score=103.76  Aligned_cols=248  Identities=10%  Similarity=0.014  Sum_probs=155.4

Q ss_pred             cceEEEEEeecCCCCCcEEEEee--CCCcEEEEcCCCCccee------eccccccceEEEEeCCCCCEEEEeeC-----C
Q 021247           15 ESVWAVTWVPATETRPALLLTGS--LDETVKLWRPDDMQLER------TNTGHCLGVVSVAAHPSGIIAASASL-----D   81 (315)
Q Consensus        15 ~~v~~v~~~~~~~~~~~~l~sgs--~d~~v~~w~~~~~~~~~------~~~~h~~~v~~~~~~~~g~~l~s~~~-----d   81 (315)
                      ..+..|+++|.+.    ++++..  .++.++||..++.++..      ...+|-..+..+.++++|.++++-..     +
T Consensus        17 ~~p~~va~~~~g~----~~v~~~~~~~~~~~l~~~~~g~~~~~p~~~~~~~~~~~~p~gv~~d~~g~L~v~D~g~~~~~~   92 (343)
T 2qe8_A           17 LAPGNITLTPDGR----LFLSLHQFYQPEMQVAELTQDGLIPFPPQSGNAIITFDTVLGIKSDGNGIVWMLDNGNQSKSV   92 (343)
T ss_dssp             SCEEEEEECTTSC----EEEEECGGGCCSCSEEEEETTEEEESCCCCSSCCCCCSCEEEEEECSSSEEEEEECHHHHTSC
T ss_pred             CCcceEEECCCCC----EEEEeCCCCCCceEEEEECCCCeecCCCcccCcccceeEeeEEEEcCCCcEEEEcCCCCcCCC
Confidence            6789999988764    566653  23435555543333321      11234567899999999987775433     5


Q ss_pred             CeEEEEECCCCceeEEeeCC------cccEEEEEECCCCCeEEEEec---CCCeEEEEecCCcceeeeecCCCCC---CC
Q 021247           82 SFVRVFDVDTNASIATLEAS------PSEVWQMQFDPKGTTLAVAGG---GSASVKLWDTATWNLIATLSIPRPE---GL  149 (315)
Q Consensus        82 ~~i~~w~~~~~~~~~~~~~~------~~~v~~~~~~~~~~~~~~~~~---~d~~i~~~d~~~~~~~~~~~~~~~~---~~  149 (315)
                      +.|.+||+.+++.+..+...      ......++++|++..++++..   .++.|.+||..+++....+..+...   ..
T Consensus        93 ~~i~~~d~~tg~~~~~~~~~~~~~~~~~~~~~v~vd~~~g~~yvtd~~~~~~~~i~v~d~~~g~~~r~~~~~~~~~~~~~  172 (343)
T 2qe8_A           93 PKLVAWDTLNNQLSRVIYLPPPITLSNSFVNDLAVDLIHNFVYISDPAPDDKAALIRVDLQTGLAARVLQGYPGIAPEDI  172 (343)
T ss_dssp             CEEEEEETTTTEEEEEEECCTTTSCTTCCCCEEEEETTTTEEEEEECCSGGGCEEEEEETTTCCEEEECTTCTTTSCCSC
T ss_pred             CeEEEEECCCCeEEEEEECChhhcccccccceEEEecCCCEEEEEcCccCCCCeEEEEECCCCCEEEEecCCCccccccc
Confidence            78999999988876666532      124578899987666777765   6789999999877765544221000   00


Q ss_pred             --CCCccC-----C------CCcceEEEEECCCCCEEEEecCCC-cEEEEEccc---c-----eeee--eecCCccceEE
Q 021247          150 --KPTDKS-----S------SKKFVLSVAWSPDGRRIACGSMDG-TISVFDVTR---A-----KFLH--HLEGHFMPVRS  205 (315)
Q Consensus       150 --~~~~~~-----~------~~~~i~~~~~~~~~~~l~~~s~dg-~i~i~d~~~---~-----~~~~--~~~~~~~~v~~  205 (315)
                        ......     .      ....+..++|+|+++.|+.+...+ .+..++...   +     +...  ...++......
T Consensus       173 ~~~~~g~~~~~~~~~g~~~~~~~~~~gia~s~dg~~ly~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~g~pdg  252 (343)
T 2qe8_A          173 DLVIDGVPVQIGQPDGTVIRPHLGVNGIVLDAENEWLYLSPMHSTSMYRIKSADLSNLQLTDAELGSKIERYSEKPICDG  252 (343)
T ss_dssp             CCEETTEECBEECTTSCEECCCCCEEEEEECTTSCEEEEEESSCSEEEEEEHHHHTCTTCCHHHHHTTCEEEEECCSCSC
T ss_pred             ceeECCEEEEeccCCCceeceecccceeEeccCCCEEEEEeCCCCeEEEEEHHHhcCCCCChhhhhcceEecccCCCCce
Confidence              000000     0      012367899999999887776555 565555321   0     0000  11122334567


Q ss_pred             EEEcCCCCcEEEEEeCCCeEEEEeCCCCeeEEEee-cccccEEEEEEcCCCCeEEEEeCCCcE
Q 021247          206 LVYSPVDPRVLFSASDDTHVHMYDAEGKSLVTAMS-GHASWVLSVDASPDGAAITTGSSDRTV  267 (315)
Q Consensus       206 ~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~-~~~~~i~~~~~~~~~~~l~s~~~d~~i  267 (315)
                      +++++ ++.++++...++.|.+||.+.++...... .+...+.++++.++++++++.+..+.+
T Consensus       253 ia~d~-~G~l~va~~~~~~V~~~d~~~G~~~~~~~~~~~~~p~~va~~~~g~l~v~~~~~~~~  314 (343)
T 2qe8_A          253 ISIDK-DHNIYVGDLAHSAIGVITSADRAYKLLVTDEKLSWTDSFNFGSDGYLYFDCNQLHHS  314 (343)
T ss_dssp             EEECT-TCCEEEEEGGGTEEEEEETTTTEEEEEEECGGGSCEEEEEECTTSCEEEEECCGGGS
T ss_pred             EEECC-CCCEEEEccCCCeEEEEECCCCCEEEEEECCceecCCeeEECCCCcEEEEeCccccc
Confidence            88887 57888888889999999985454433222 235678899999998888877755444

>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*

Probab=99.50  E-value=7.5e-12  Score=114.79  Aligned_cols=246  Identities=13%  Similarity=0.028  Sum_probs=155.7

Q ss_pred             hhhhccccceEEEEEeecCCCCCcEEEEe----eCCCcEEEEcCCCCcceeeccccccc--eEEEEeCCCCCEEEEeeCC
Q 021247            8 SVENAHEESVWAVTWVPATETRPALLLTG----SLDETVKLWRPDDMQLERTNTGHCLG--VVSVAAHPSGIIAASASLD   81 (315)
Q Consensus         8 ~~~~~h~~~v~~v~~~~~~~~~~~~l~sg----s~d~~v~~w~~~~~~~~~~~~~h~~~--v~~~~~~~~g~~l~s~~~d   81 (315)
                      ..+.+|...+.+++|+|+++.   +.++-    +.+..|++||.++++....   +...  ...+.|+ ||+.|+.++.+
T Consensus       122 ~la~~~~~~l~~~~~SpDg~~---lAy~~~~~G~~~~~i~v~dl~tg~~~~~---~~~~~k~~~~~Ws-Dg~~l~y~~~~  194 (693)
T 3iuj_A          122 TLSPDGTTALDQLSFSRDGRI---LAYSLSLAGSDWREIHLMDVESKQPLET---PLKDVKFSGISWL-GNEGFFYSSYD  194 (693)
T ss_dssp             GGSTTSCCEEEEEEECTTSSE---EEEEEECSSCCEEEEEEEETTTCSEEEE---EEEEEESCCCEEE-TTTEEEEEESS
T ss_pred             hccCCCcEEEEEEEECCCCCE---EEEEEecCCCceEEEEEEECCCCCCCcc---ccCCceeccEEEe-CCCEEEEEEec
Confidence            344567778999999998762   33333    3335799999998875433   2222  2567899 99988887777


Q ss_pred             C-------------eEEEEECCCCce--eEEeeC---CcccEEEEEECCCCCeEEEEecC---CCeEEEEecCCcc-eee
Q 021247           82 S-------------FVRVFDVDTNAS--IATLEA---SPSEVWQMQFDPKGTTLAVAGGG---SASVKLWDTATWN-LIA  139 (315)
Q Consensus        82 ~-------------~i~~w~~~~~~~--~~~~~~---~~~~v~~~~~~~~~~~~~~~~~~---d~~i~~~d~~~~~-~~~  139 (315)
                      .             .|++|++.+...  ...+..   ++.....+.++|+++.++++...   ...|.++|+.+.+ ...
T Consensus       195 ~~~~~~~~~~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~~~~~~~  274 (693)
T 3iuj_A          195 KPDGSELSARTDQHKVYFHRLGTAQEDDRLVFGAIPAQHHRYVGATVTEDDRFLLISAANSTSGNRLYVKDLSQENAPLL  274 (693)
T ss_dssp             CCC-------CCCCEEEEEETTSCGGGCEEEESCSGGGCCSEEEEEECTTSCEEEEEEESSSSCCEEEEEETTSTTCCCE
T ss_pred             CcccccccccCCCcEEEEEECCCCcccceEEEecCCCCCeEEEEEEEcCCCCEEEEEEccCCCCcEEEEEECCCCCCceE
Confidence            4             399999987653  233322   23346789999999988776543   3589999987653 122


Q ss_pred             eecCCCCCCCCCCccCCCCcceEEEEECCCCCEEEEec-C---CCcEEEEEccccee--eeeecCCccceEEEEEcCCCC
Q 021247          140 TLSIPRPEGLKPTDKSSSKKFVLSVAWSPDGRRIACGS-M---DGTISVFDVTRAKF--LHHLEGHFMPVRSLVYSPVDP  213 (315)
Q Consensus       140 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~s-~---dg~i~i~d~~~~~~--~~~~~~~~~~v~~~~~~~~~~  213 (315)
                      .+..+.             ...... ++++|..|+..+ .   .+.|..+|+.++..  ...+..|...+.  .|++.+.
T Consensus       275 ~l~~~~-------------~~~~~~-~~~~g~~l~~~t~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~--~~s~~g~  338 (693)
T 3iuj_A          275 TVQGDL-------------DADVSL-VDNKGSTLYLLTNRDAPNRRLVTVDAANPGPAHWRDLIPERQQVL--TVHSGSG  338 (693)
T ss_dssp             EEECSS-------------SSCEEE-EEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSSCE--EEEEETT
T ss_pred             EEeCCC-------------CceEEE-EeccCCEEEEEECCCCCCCEEEEEeCCCCCccccEEEecCCCCEE--EEEEECC
Confidence            221111             112222 566666665433 3   35799999977543  234555555554  7887655


Q ss_pred             cEEEEEeCCC--eEEEEeCCCCeeEEEeecccccEEEEEEcCCCCeEEEEeCC----CcEEEEecCccc
Q 021247          214 RVLFSASDDT--HVHMYDAEGKSLVTAMSGHASWVLSVDASPDGAAITTGSSD----RTVKLWDLNMRA  276 (315)
Q Consensus       214 ~~l~s~~~d~--~i~~wd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~d----~~i~iwd~~~~~  276 (315)
                      .++++...++  .|++||..++........+.+.+..+.++|++..++....+    ++|..||+..++
T Consensus       339 ~lv~~~~~~g~~~l~~~d~~g~~~~~l~~p~~~~~~~~~~~~d~~~l~~~~ss~~tP~~l~~~d~~~g~  407 (693)
T 3iuj_A          339 YLFAEYMVDATARVEQFDYEGKRVREVALPGLGSVSGFNGKHDDPALYFGFENYAQPPTLYRFEPKSGA  407 (693)
T ss_dssp             EEEEEEEETTEEEEEEECTTSCEEEEECCSSSSEEEECCCCTTCSCEEEEEECSSSCCEEEEECTTTCC
T ss_pred             EEEEEEEECCeeEEEEEECCCCeeEEeecCCCceEEeeecCCCCCEEEEEecCCCCCCEEEEEECCCCe
Confidence            5555555665  68899988664433222345567778888887766555444    789999987654

>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}

Probab=99.50  E-value=2.1e-12  Score=108.33  Aligned_cols=239  Identities=14%  Similarity=0.119  Sum_probs=152.2

Q ss_pred             cceEEEEeCCCCCEEEEee--CCCeEEEEECCCCceeEEee-------CCcccEEEEEECCCCCeEEEEecC-----CCe
Q 021247           61 LGVVSVAAHPSGIIAASAS--LDSFVRVFDVDTNASIATLE-------ASPSEVWQMQFDPKGTTLAVAGGG-----SAS  126 (315)
Q Consensus        61 ~~v~~~~~~~~g~~l~s~~--~d~~i~~w~~~~~~~~~~~~-------~~~~~v~~~~~~~~~~~~~~~~~~-----d~~  126 (315)
                      ..+..++++++|+++++..  .++.++||.+.+++ +..+.       .+...+..++++++++.+ ++...     +..
T Consensus        17 ~~p~~va~~~~g~~~v~~~~~~~~~~~l~~~~~g~-~~~~p~~~~~~~~~~~~p~gv~~d~~g~L~-v~D~g~~~~~~~~   94 (343)
T 2qe8_A           17 LAPGNITLTPDGRLFLSLHQFYQPEMQVAELTQDG-LIPFPPQSGNAIITFDTVLGIKSDGNGIVW-MLDNGNQSKSVPK   94 (343)
T ss_dssp             SCEEEEEECTTSCEEEEECGGGCCSCSEEEEETTE-EEESCCCCSSCCCCCSCEEEEEECSSSEEE-EEECHHHHTSCCE
T ss_pred             CCcceEEECCCCCEEEEeCCCCCCceEEEEECCCC-eecCCCcccCcccceeEeeEEEEcCCCcEE-EEcCCCCcCCCCe
Confidence            5688999999999998863  23435566655443 33221       123578999999997644 44332     578


Q ss_pred             EEEEecCCcceeeeecCCCCCCCCCCccCCCCcceEEEEECCCCCE-EEEec---CCCcEEEEEcccceeeeeecCCc--
Q 021247          127 VKLWDTATWNLIATLSIPRPEGLKPTDKSSSKKFVLSVAWSPDGRR-IACGS---MDGTISVFDVTRAKFLHHLEGHF--  200 (315)
Q Consensus       127 i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~-l~~~s---~dg~i~i~d~~~~~~~~~~~~~~--  200 (315)
                      |.+||+.+++.+..+.++....       .....+..+++++++.. +++..   .++.|.+||+.+++....+.+|.  
T Consensus        95 i~~~d~~tg~~~~~~~~~~~~~-------~~~~~~~~v~vd~~~g~~yvtd~~~~~~~~i~v~d~~~g~~~r~~~~~~~~  167 (343)
T 2qe8_A           95 LVAWDTLNNQLSRVIYLPPPIT-------LSNSFVNDLAVDLIHNFVYISDPAPDDKAALIRVDLQTGLAARVLQGYPGI  167 (343)
T ss_dssp             EEEEETTTTEEEEEEECCTTTS-------CTTCCCCEEEEETTTTEEEEEECCSGGGCEEEEEETTTCCEEEECTTCTTT
T ss_pred             EEEEECCCCeEEEEEECChhhc-------ccccccceEEEecCCCEEEEEcCccCCCCeEEEEECCCCCEEEEecCCCcc
Confidence            9999999888777776543211       11234678999986444 45555   67899999998777655443321  


Q ss_pred             ---------------------------cceEEEEEcCCCCcEEEEEeC-CCeEEEEeCC---CCe-----eEE--Eeecc
Q 021247          201 ---------------------------MPVRSLVYSPVDPRVLFSASD-DTHVHMYDAE---GKS-----LVT--AMSGH  242 (315)
Q Consensus       201 ---------------------------~~v~~~~~~~~~~~~l~s~~~-d~~i~~wd~~---~~~-----~~~--~~~~~  242 (315)
                                                 ..+..++|+|+ ++.|+.+.. ...+..++..   .+.     ...  ...++
T Consensus       168 ~~~~~~~~~~g~~~~~~~~~g~~~~~~~~~~gia~s~d-g~~ly~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~  246 (343)
T 2qe8_A          168 APEDIDLVIDGVPVQIGQPDGTVIRPHLGVNGIVLDAE-NEWLYLSPMHSTSMYRIKSADLSNLQLTDAELGSKIERYSE  246 (343)
T ss_dssp             SCCSCCCEETTEECBEECTTSCEECCCCCEEEEEECTT-SCEEEEEESSCSEEEEEEHHHHTCTTCCHHHHHTTCEEEEE
T ss_pred             cccccceeECCEEEEeccCCCceeceecccceeEeccC-CCEEEEEeCCCCeEEEEEHHHhcCCCCChhhhhcceEeccc
Confidence                                       13578999984 555555544 4466666532   110     000  11123


Q ss_pred             cccEEEEEEcCCCCeEEEEeCCCcEEEEecCccceehcccc-cccceEEEEEeeCCCEEEEEeCCCcE
Q 021247          243 ASWVLSVDASPDGAAITTGSSDRTVKLWDLNMRAAMQSMTN-HTDQVWGVSFRPLGGRVVSVSDDKSI  309 (315)
Q Consensus       243 ~~~i~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~-~~~~v~~~~~s~~~~~l~s~~~d~~i  309 (315)
                      .+....++++++|.++++...++.|.+||...++....... +...+.+++|.++|..+++.+..+.+
T Consensus       247 ~g~pdgia~d~~G~l~va~~~~~~V~~~d~~~G~~~~~~~~~~~~~p~~va~~~~g~l~v~~~~~~~~  314 (343)
T 2qe8_A          247 KPICDGISIDKDHNIYVGDLAHSAIGVITSADRAYKLLVTDEKLSWTDSFNFGSDGYLYFDCNQLHHS  314 (343)
T ss_dssp             CCSCSCEEECTTCCEEEEEGGGTEEEEEETTTTEEEEEEECGGGSCEEEEEECTTSCEEEEECCGGGS
T ss_pred             CCCCceEEECCCCCEEEEccCCCeEEEEECCCCCEEEEEECCceecCCeeEECCCCcEEEEeCccccc
Confidence            33456789999999999998999999999844543222211 24568899999998877777654433

>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...

Probab=99.49  E-value=2.8e-11  Score=101.60  Aligned_cols=258  Identities=16%  Similarity=0.140  Sum_probs=164.2

Q ss_pred             EEEEeecCCCCCcEEEEee----------CCCcEEEEcCCCCcceeecccc-------ccceEEEEeCCCCCEEEEeeC-
Q 021247           19 AVTWVPATETRPALLLTGS----------LDETVKLWRPDDMQLERTNTGH-------CLGVVSVAAHPSGIIAASASL-   80 (315)
Q Consensus        19 ~v~~~~~~~~~~~~l~sgs----------~d~~v~~w~~~~~~~~~~~~~h-------~~~v~~~~~~~~g~~l~s~~~-   80 (315)
                      .++++|+++.    ++.++          .++.|.+||..+.+....+.-.       ......+.++|+|++++.+.. 
T Consensus        82 ~va~spDG~~----lyVan~~~~r~~~G~~~~~VsviD~~t~~v~~~I~v~~g~r~~~g~~P~~~a~spDGk~lyVan~~  157 (386)
T 3sjl_D           82 NPVVADDGSF----IAHASTVFSRIARGERTDYVEVFDPVTLLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFS  157 (386)
T ss_dssp             EEEECTTSSC----EEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECS
T ss_pred             cEEECCCCCE----EEEEcccccccccCCCCCEEEEEECCCCeEEEEEECCCccccccCCCCceEEEcCCCCEEEEEEcC
Confidence            4889998763    54444          4678999999998876654211       123557899999998887653 


Q ss_pred             -CCeEEEEECCCCceeEEeeCCcccEEEEEECCCCCeEEEEecCCCeEEEEecCC-cceeeeecCCCCCCCCCCccCCCC
Q 021247           81 -DSFVRVFDVDTNASIATLEASPSEVWQMQFDPKGTTLAVAGGGSASVKLWDTAT-WNLIATLSIPRPEGLKPTDKSSSK  158 (315)
Q Consensus        81 -d~~i~~w~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~~d~~~-~~~~~~~~~~~~~~~~~~~~~~~~  158 (315)
                       ++.|.++|+.+++.+.++....  +. ..+ |.+...+++.+.||.+.+.++.+ ++......    ....+     ..
T Consensus       158 ~~~~VsVID~~t~~vv~tI~v~g--~~-~~~-P~g~~~~~~~~~DG~~~~v~~~~~g~v~~~~~----~~~~~-----~~  224 (386)
T 3sjl_D          158 PAPAVGVVDLEGKAFKRMLDVPD--CY-HIF-PTAPDTFFMHCRDGSLAKVAFGTEGTPEITHT----EVFHP-----ED  224 (386)
T ss_dssp             SSCEEEEEETTTTEEEEEEECCS--EE-EEE-EEETTEEEEEETTSCEEEEECCSSSCCEEEEC----CCCSC-----TT
T ss_pred             CCCeEEEEECCCCcEEEEEECCC--cc-eee-cCCCceeEEECCCCCEEEEECCCCCeEEEeec----ceecc-----cc
Confidence             6899999999999888886432  11 122 44433334556788888888876 44432111    01100     01


Q ss_pred             cce-EEEEE-CCCCCEEEEecCCCcEEEEEcccce--eeeeec---------C-CccceEEEEEcCCCCcEEEEEeC---
Q 021247          159 KFV-LSVAW-SPDGRRIACGSMDGTISVFDVTRAK--FLHHLE---------G-HFMPVRSLVYSPVDPRVLFSASD---  221 (315)
Q Consensus       159 ~~i-~~~~~-~~~~~~l~~~s~dg~i~i~d~~~~~--~~~~~~---------~-~~~~v~~~~~~~~~~~~l~s~~~---  221 (315)
                      .++ ....| .++|++++ .+.+|.+++.|+.+..  ....+.         + .......+.++|...+++++-..   
T Consensus       225 ~~~~~~~~~~~~dG~~~~-vs~~g~V~v~d~~~~~~~v~~~~~~~~~~~~~~g~~p~g~q~~a~~~~~~~lyV~~~~~~~  303 (386)
T 3sjl_D          225 EFLINHPAYSQKAGRLVW-PTYTGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYHRALDRIYLLVDQRDE  303 (386)
T ss_dssp             SCBCSCCEEETTTTEEEE-EBTTSEEEEEECTTSSCEECCCEESSCHHHHHTTEEECSSSCEEEETTTTEEEEEEEECCT
T ss_pred             ccccccceeEcCCCcEEE-EeCCCEEEEEECCCCcceeecceeccccccccccccCCCcceeeECCCCCeEEEEeccccc
Confidence            111 12355 36776555 4457899999996553  332221         0 11122346677755555554431   


Q ss_pred             ------CCeEEEEeCCCCeeEEEeecccccEEEEEEcCCCC-eEEE-EeCCCcEEEEecCccceehcccccccceEEEEE
Q 021247          222 ------DTHVHMYDAEGKSLVTAMSGHASWVLSVDASPDGA-AITT-GSSDRTVKLWDLNMRAAMQSMTNHTDQVWGVSF  293 (315)
Q Consensus       222 ------d~~i~~wd~~~~~~~~~~~~~~~~i~~~~~~~~~~-~l~s-~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~  293 (315)
                            .+.|.++|.++++.+..+.-. ..+.+++++++++ .|++ ...++.|.++|..+++.++++..- +..+.+.+
T Consensus       304 ~~hk~~~~~V~viD~~t~kv~~~i~vg-~~~~~lavs~D~~~~ly~tn~~~~~VsViD~~t~k~~~~i~~~-~~p~~l~~  381 (386)
T 3sjl_D          304 WRHKTASRFVVVLDAKTGERLAKFEMG-HEIDSINVSQDEKPLLYALSTGDKTLYIHDAESGEELRSVNQL-GHGPQVIT  381 (386)
T ss_dssp             TCTTSCEEEEEEEETTTCCEEEEEEEE-EEECEEEECSSSSCEEEEEETTTTEEEEEETTTCCEEEEECCC-CSSCCEEE
T ss_pred             cccCCCCCEEEEEECCCCeEEEEEECC-CCcceEEECCCCCeEEEEEcCCCCeEEEEECCCCcEEEEecCC-CCCceeEE
Confidence                  257999999999988876532 3577999999986 5555 455899999999999988877543 33345667


Q ss_pred             eeC
Q 021247          294 RPL  296 (315)
Q Consensus       294 s~~  296 (315)
                      ++|
T Consensus       382 s~d  384 (386)
T 3sjl_D          382 TAD  384 (386)
T ss_dssp             ECC
T ss_pred             CCc
Confidence            766

>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1

Probab=99.49  E-value=3.8e-12  Score=106.87  Aligned_cols=254  Identities=14%  Similarity=0.027  Sum_probs=166.5

Q ss_pred             EEEEeeCCC----cEEEEcCCCCcceeeccccccceEEEEeCCCCCEEEEee----------CCCeEEEEECCCCceeEE
Q 021247           32 LLLTGSLDE----TVKLWRPDDMQLERTNTGHCLGVVSVAAHPSGIIAASAS----------LDSFVRVFDVDTNASIAT   97 (315)
Q Consensus        32 ~l~sgs~d~----~v~~w~~~~~~~~~~~~~h~~~v~~~~~~~~g~~l~s~~----------~d~~i~~w~~~~~~~~~~   97 (315)
                      ..++-..++    .|.++|.++.+....++.-..+  .+.++|+|+++..+.          .++.|.+||+.+++.+.+
T Consensus        34 ~yV~~~~~~~~~d~vsvID~~t~~v~~~i~vG~~P--~i~~spDg~~lyVan~~~~r~~~G~~~~~VsviD~~T~~vv~~  111 (368)
T 1mda_H           34 SHITLPAYFAGTTENWVSCAGCGVTLGHSLGAFLS--LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIAD  111 (368)
T ss_dssp             EEEEECTTTCSSEEEEEEETTTTEEEEEEEECTTC--EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEE
T ss_pred             EEEECCccCCccceEEEEECCCCeEEEEEeCCCCC--ceEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCCEEEE
Confidence            455555555    8889999999988877544445  799999998887765          368899999999999888


Q ss_pred             eeCC-------cccEEEEEECCCCCeEEEEecC-CCeEEE--EecCCcceeeeecCCCCCCCCCCccCCCCcceEEEEEC
Q 021247           98 LEAS-------PSEVWQMQFDPKGTTLAVAGGG-SASVKL--WDTATWNLIATLSIPRPEGLKPTDKSSSKKFVLSVAWS  167 (315)
Q Consensus        98 ~~~~-------~~~v~~~~~~~~~~~~~~~~~~-d~~i~~--~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~  167 (315)
                      +...       ......+.++|+++.++++... ...+.+  +|+.+   +..+..+..                 ..+.
T Consensus       112 I~v~~~~~~~~g~~P~~ia~SpDGk~lyVan~~~~~~v~V~~iD~~t---v~~i~v~~~-----------------~~~~  171 (368)
T 1mda_H          112 IELPDAPRFSVGPRVHIIGNCASSACLLFFLFGSSAAAGLSVPGASD---DQLTKSASC-----------------FHIH  171 (368)
T ss_dssp             EEETTSCSCCBSCCTTSEEECTTSSCEEEEECSSSCEEEEEETTTEE---EEEEECSSC-----------------CCCE
T ss_pred             EECCCccccccCCCcceEEEcCCCCEEEEEccCCCCeEEEEEEchhh---ceEEECCCc-----------------eEEc
Confidence            7643       1224478899999988877544 467888  99876   344432211                 0112


Q ss_pred             CCC-CEEEEecCCCcEEEEEccc-----ceeee----eecCCccceEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCe--e
Q 021247          168 PDG-RRIACGSMDGTISVFDVTR-----AKFLH----HLEGHFMPVRSLVYSPVDPRVLFSASDDTHVHMYDAEGKS--L  235 (315)
Q Consensus       168 ~~~-~~l~~~s~dg~i~i~d~~~-----~~~~~----~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~--~  235 (315)
                      |++ ..+++.+.||.+.+.|+.+     ++...    .+.....+.   . .+.++.+++.. . +.+.+.|.....  .
T Consensus       172 p~g~~~~~~~~~dg~~~~vd~~~~~~~~~~v~~~~t~~i~vg~~P~---~-~~~~~~~~~vs-~-~~V~viD~~~~~~~v  245 (368)
T 1mda_H          172 PGAAATHYLGSCPASLAASDLAAAPAAAGIVGAQCTGAQNCSSQAA---Q-ANYPGMLVWAV-A-SSILQGDIPAAGATM  245 (368)
T ss_dssp             EEETTEEECCCCTTSCEEEECCSSCCCCEECCCCSCTTSCBCSCCE---E-ETTTTEEEECB-S-SCCEEEECCSSCCEE
T ss_pred             cCCCeEEEEEcCCCCEEEEECccccccCCeEEEEeeeeeeCCCCcc---c-cccCCEEEEEc-C-CEEEEEECCCCcceE
Confidence            333 3445666788888888876     44321    111122333   2 45455444444 4 889999986532  2


Q ss_pred             EEEeec-------cc---ccEEEEEEcCCCCeEEEEeC---------CCcEEEEecCccceehcccccccceEEEEEeeC
Q 021247          236 VTAMSG-------HA---SWVLSVDASPDGAAITTGSS---------DRTVKLWDLNMRAAMQSMTNHTDQVWGVSFRPL  296 (315)
Q Consensus       236 ~~~~~~-------~~---~~i~~~~~~~~~~~l~s~~~---------d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~  296 (315)
                      +..+.-       +.   .....+.++|+++.++.+..         ++.+.++|+.+++.+.++.... ..++++|+|+
T Consensus       246 ~~~~~~~~~~~~~~~~~p~g~~~v~~s~dg~~lyV~~~~~~~~~~~~~~~~~ViD~~t~~vv~~i~vg~-~p~gi~~s~D  324 (368)
T 1mda_H          246 KAAIDGNESGRKADNFRSAGFQMVAKLKNTDGIMILTVEHSRSCLAAAENTSSVTASVGQTSGPISNGH-DSDAIIAAQD  324 (368)
T ss_dssp             ECCCCSSCTHHHHTTEEECSSSCEEEETTTTEEEEEEEECSSCTTSCEEEEEEEESSSCCEEECCEEEE-EECEEEECCS
T ss_pred             EEEEEeccccccccccccCcceeeEEcCCCCEEEEEeccccCcccccCCCEEEEECCCCeEEEEEECCC-CcceEEECCC
Confidence            222110       00   11112679999887765532         2356699999998888876543 6889999999


Q ss_pred             CCE-EEEEe-CCCcEEEeec
Q 021247          297 GGR-VVSVS-DDKSISLYEY  314 (315)
Q Consensus       297 ~~~-l~s~~-~d~~i~i~~~  314 (315)
                      |++ +++.. .+++|.++|.
T Consensus       325 g~~l~va~~~~~~~VsVID~  344 (368)
T 1mda_H          325 GASDNYANSAGTEVLDIYDA  344 (368)
T ss_dssp             SSCEEEEEETTTTEEEEEES
T ss_pred             CCEEEEEccCCCCeEEEEEC
Confidence            985 56666 5999999986

>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}

Probab=99.48  E-value=1.9e-11  Score=104.35  Aligned_cols=246  Identities=14%  Similarity=0.077  Sum_probs=162.6

Q ss_pred             EEEEeecCCCCCcEEEEee----------CCCcEEEEcCCCCcceeecccc-------ccceEEEEeCCCCCEEEEeeC-
Q 021247           19 AVTWVPATETRPALLLTGS----------LDETVKLWRPDDMQLERTNTGH-------CLGVVSVAAHPSGIIAASASL-   80 (315)
Q Consensus        19 ~v~~~~~~~~~~~~l~sgs----------~d~~v~~w~~~~~~~~~~~~~h-------~~~v~~~~~~~~g~~l~s~~~-   80 (315)
                      .++++|+++.    ++.+.          .++.|.++|..+.+..+.+.--       ......+.++|+|++++.+.. 
T Consensus       122 gia~SpDgk~----lyVan~~~~~~~~G~~~~~VsviD~~t~~vv~~I~v~g~~r~~~g~~P~~~~~spDGk~lyV~n~~  197 (426)
T 3c75_H          122 HPVAAEDGSF----FAQASTVFERIARGKRTDYVEVFDPVTFLPIADIELPDAPRFLVGTYQWMNALTPDNKNLLFYQFS  197 (426)
T ss_dssp             EEEECTTSSC----EEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCCBSCCGGGSEECTTSSEEEEEECS
T ss_pred             ceEECCCCCE----EEEEeccccccccCCCCCEEEEEECCCCcEEEEEECCCccccccCCCcceEEEcCCCCEEEEEecC
Confidence            7899998763    55544          4779999999988877654310       123456789999998887764 


Q ss_pred             -CCeEEEEECCCCceeEEeeCCcccEEEEEECCCCCeEEEEecCCCeEEEEecCCcceeeeecCCCCCCCCCCccCCCCc
Q 021247           81 -DSFVRVFDVDTNASIATLEASPSEVWQMQFDPKGTTLAVAGGGSASVKLWDTATWNLIATLSIPRPEGLKPTDKSSSKK  159 (315)
Q Consensus        81 -d~~i~~w~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~  159 (315)
                       ++.|.+.|+.+.+.+.++.....    ....|.++..+++.+.|+.+.+.+..+++......  .  ....    ....
T Consensus       198 ~~~~VsVID~~t~kvv~~I~v~g~----~~~~p~g~~~~v~~~~dG~~~~V~~~~~~v~~~~~--~--~~~v----~~~p  265 (426)
T 3c75_H          198 PAPAVGVVDLEGKTFDRMLDVPDC----YHIFPASPTVFYMNCRDGSLARVDFADGETKVTNT--E--VFHT----EDEL  265 (426)
T ss_dssp             SSCEEEEEETTTTEEEEEEECCSE----EEEEEEETTEEEEEETTSSEEEEECCTTCCEEEEC--C--CCSC----TTSC
T ss_pred             CCCeEEEEECCCCeEEEEEEcCCc----eeeccCCCcEEEEEcCCCCEEEEECCCCcEEEEee--e--eecc----CCCc
Confidence             57899999999998888765322    22334444444555677888878875554442211  0  0000    0001


Q ss_pred             ceEEEEECCCCCEEEEecCCCcEEEEEcccceee--eeecC---C-------ccceEEEEEcCCCCcEEEEEeC------
Q 021247          160 FVLSVAWSPDGRRIACGSMDGTISVFDVTRAKFL--HHLEG---H-------FMPVRSLVYSPVDPRVLFSASD------  221 (315)
Q Consensus       160 ~i~~~~~~~~~~~l~~~s~dg~i~i~d~~~~~~~--~~~~~---~-------~~~v~~~~~~~~~~~~l~s~~~------  221 (315)
                      ....+.+.+++..++..+..+.+.+.|+......  ..+..   .       ......+.++|++.+++++...      
T Consensus       266 ~~~~~~~~~dg~~~~~~s~~g~V~ViD~~~~~~~v~~~~~~~~~~~i~~g~~p~g~~~va~s~dg~rlyVa~~~~~~gth  345 (426)
T 3c75_H          266 LINHPAFSLRSGRLVWPTYTGKIFQADLTAEGATFRAPIEALTEAERADDWRPGGWQQTAYHRQSDRIYLLVDQRDEWKH  345 (426)
T ss_dssp             BCSCCEECTTTCEEEEEBTTSEEEEEEECSSCEEECCCEESSCTTTGGGTEEECSSSCEEEEGGGTEEEEEEEECCTTCT
T ss_pred             eeeEeeecCCCCEEEEEeCCCcEEEEeccCCceEEeeeeeeccccccccccccCCceeeEEcCCCCEEEEEecccccccc
Confidence            1224567888887776677889999998654321  11110   0       0111236788866666665431      


Q ss_pred             ---CCeEEEEeCCCCeeEEEeecccccEEEEEEcCCCC-eEEEEe-CCCcEEEEecCccceehcc
Q 021247          222 ---DTHVHMYDAEGKSLVTAMSGHASWVLSVDASPDGA-AITTGS-SDRTVKLWDLNMRAAMQSM  281 (315)
Q Consensus       222 ---d~~i~~wd~~~~~~~~~~~~~~~~i~~~~~~~~~~-~l~s~~-~d~~i~iwd~~~~~~~~~~  281 (315)
                         .+.|.++|.++.+.+..+... .....+.|+|+++ .+++.. .++.|.++|+.+++.++++
T Consensus       346 k~~s~~VsVID~~T~kvv~~I~vg-~~P~gia~spDg~~~lyv~n~~s~~VsVID~~t~kvv~tI  409 (426)
T 3c75_H          346 KAASRFVVVLNAETGERINKIELG-HEIDSINVSQDAEPLLYALSAGTQTLHIYDAATGEELRSV  409 (426)
T ss_dssp             TSCEEEEEEEETTTCCEEEEEEEE-EEECEEEECCSSSCEEEEEETTTTEEEEEETTTCCEEEEE
T ss_pred             cCCCCEEEEEECCCCeEEEEEECC-CCcCeEEEccCCCEEEEEEcCCCCeEEEEECCCCCEEEEe
Confidence               357999999999988877532 2477899999998 888887 5999999999999988876

>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1

Probab=99.45  E-value=5.6e-11  Score=108.35  Aligned_cols=266  Identities=14%  Similarity=0.151  Sum_probs=167.1

Q ss_pred             cEEEEeeCCCcEEEEcCCCCcceeecccc-c----cceEEEEeCCCCCEEEEee-----CCCeEEEEECCCCceeEEeeC
Q 021247           31 ALLLTGSLDETVKLWRPDDMQLERTNTGH-C----LGVVSVAAHPSGIIAASAS-----LDSFVRVFDVDTNASIATLEA  100 (315)
Q Consensus        31 ~~l~sgs~d~~v~~w~~~~~~~~~~~~~h-~----~~v~~~~~~~~g~~l~s~~-----~d~~i~~w~~~~~~~~~~~~~  100 (315)
                      ..++.++.|+.|..+|..+++.......+ .    ..+.+-..-.++.+++..+     .++.|+.+|..+++.+..+..
T Consensus       129 ~~v~v~~~dg~l~alD~~tG~~~W~~~~~~~~~~~~~~~~~p~v~~~~v~v~~~~~~~~~~g~v~a~D~~tG~~~W~~~~  208 (677)
T 1kb0_A          129 GKVYVGAWDGRLIALDAATGKEVWHQNTFEGQKGSLTITGAPRVFKGKVIIGNGGAEYGVRGYITAYDAETGERKWRWFS  208 (677)
T ss_dssp             TEEEEECTTSEEEEEETTTCCEEEEEETTTTCCSSCBCCSCCEEETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEES
T ss_pred             CEEEEEcCCCEEEEEECCCCCEEeeecCCcCcCcCcccccCcEEECCEEEEEecccccCCCCEEEEEECCCCcEEEEecc
Confidence            46888899999999999988876655432 1    1111100111344444332     279999999999998877654


Q ss_pred             Cccc--------------------------------EEEEEECCCCCeEEEEecCCC-------------------eEEE
Q 021247          101 SPSE--------------------------------VWQMQFDPKGTTLAVAGGGSA-------------------SVKL  129 (315)
Q Consensus       101 ~~~~--------------------------------v~~~~~~~~~~~~~~~~~~d~-------------------~i~~  129 (315)
                      ....                                ...++++|++..+++. ..++                   .|..
T Consensus       209 ~~~~~~~~~~~~~~~~g~~~w~~~g~~~~~~~g~~~w~~~~~d~~~~~vy~~-~~~~~~w~~~~~~~~~gd~~~~~sv~A  287 (677)
T 1kb0_A          209 VPGDPSKPFEDESMKRAARTWDPSGKWWEAGGGGTMWDSMTFDAELNTMYVG-TGNGSPWSHKVRSPKGGDNLYLASIVA  287 (677)
T ss_dssp             SCCCTTSCCSSHHHHHHHTTSCGGGCHHHHCEECCCCSCEEEETTTTEEEEE-CCCEESSCHHHHSTTCCCCTTTTEEEE
T ss_pred             CCCCccccccccccccccccccccCceeEeCCCcccccceeEcCCCCEEEEE-CCCCccccCCCCCccCCCCeeeEEEEE
Confidence            3211                                1246788887766554 3332                   5999


Q ss_pred             EecCCcceeeeecCCCCCCCCCCccCCCCcceEEEEECCCC---CEEEEecCCCcEEEEEcccceeeeeecCCc------
Q 021247          130 WDTATWNLIATLSIPRPEGLKPTDKSSSKKFVLSVAWSPDG---RRIACGSMDGTISVFDVTRAKFLHHLEGHF------  200 (315)
Q Consensus       130 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~---~~l~~~s~dg~i~i~d~~~~~~~~~~~~~~------  200 (315)
                      +|.++++.+..+.........   ...... ..-+....+|   ..++.++.+|.++++|..+++.+.......      
T Consensus       288 lD~~TG~~~W~~~~~~~d~wd---~~~~~~-p~l~~~~~dG~~~~~l~~~~~~G~l~~lD~~tG~~l~~~~~~~~~~~~~  363 (677)
T 1kb0_A          288 LDPDTGKYKWHYQETPGDNWD---YTSTQP-MILADIKIAGKPRKVILHAPKNGFFFVLDRTNGKFISAKNFVPVNWASG  363 (677)
T ss_dssp             ECTTTCCEEEEEESSTTCCSC---CCCCSC-CEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEE
T ss_pred             EECCCCCEEEEEecCCCcccc---cccCCC-cEEEecccCCcEeeEEEEECCCCEEEEEECCCCCEeccccccccCcccc
Confidence            999999999887653221100   000011 1122333467   678899999999999999998765443110      


Q ss_pred             -----cce------------------------EEEEEcCCCCcEEEEEeC------------------------------
Q 021247          201 -----MPV------------------------RSLVYSPVDPRVLFSASD------------------------------  221 (315)
Q Consensus       201 -----~~v------------------------~~~~~~~~~~~~l~s~~~------------------------------  221 (315)
                           .++                        ..++++|..+ +++....                              
T Consensus       364 ~d~~g~~~~~~~~~~~~~~~~~~P~~~G~~~w~~~a~dp~~~-~~yv~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~  442 (677)
T 1kb0_A          364 YDKHGKPIGIAAARDGSKPQDAVPGPYGAHNWHPMSFNPQTG-LVYLPAQNVPVNLMDDKKWEFNQAGPGKPQSGTGWNT  442 (677)
T ss_dssp             ECTTSCEEECGGGGCTTSCEECSSCTTCSSCSSCCEEETTTT-EEEEEEEECCCEEEECTTCCTTCCCTTSTTGGGTCCC
T ss_pred             cCCCCceeeccccCcCCCccEECcCcccccCCCCceEcCCCC-EEEEeChhcceeeeccccccccccccccccccccccc
Confidence                 111                        1456777444 4444322                              


Q ss_pred             -------------CCeEEEEeCCCCeeEEEeecccccEEEEEEcCCCCeEEEEeCCCcEEEEecCccceehcccccc-cc
Q 021247          222 -------------DTHVHMYDAEGKSLVTAMSGHASWVLSVDASPDGAAITTGSSDRTVKLWDLNMRAAMQSMTNHT-DQ  287 (315)
Q Consensus       222 -------------d~~i~~wd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~-~~  287 (315)
                                   .+.|..||+.+++.+-.... ...+....+...+.+++.++.|+.+++||.++++.+.++.... ..
T Consensus       443 g~~~~~~~~~~~~~g~l~A~D~~tG~~~W~~~~-~~~~~~g~~~~~g~~v~~g~~dg~l~a~D~~tG~~lw~~~~~~~~~  521 (677)
T 1kb0_A          443 AKFFNAEPPKSKPFGRLLAWDPVAQKAAWSVEH-VSPWNGGTLTTAGNVVFQGTADGRLVAYHAATGEKLWEAPTGTGVV  521 (677)
T ss_dssp             CEEECSSCCCSCCEEEEEEEETTTTEEEEEEEE-SSSCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCC
T ss_pred             ccccccccCCCCCccEEEEEeCCCCcEEeecCC-CCCCcCcceEeCCCEEEEECCCCcEEEEECCCCceeeeeeCCCCcc
Confidence                         27899999999887655542 2233444456677788889999999999999999887765332 22


Q ss_pred             eEEEEEeeCCCEEEEE
Q 021247          288 VWGVSFRPLGGRVVSV  303 (315)
Q Consensus       288 v~~~~~s~~~~~l~s~  303 (315)
                      ..-+.+.++|+.++..
T Consensus       522 ~~p~~y~~~G~~~v~~  537 (677)
T 1kb0_A          522 AAPSTYMVDGRQYVSV  537 (677)
T ss_dssp             SCCEEEEETTEEEEEE
T ss_pred             cCCEEEEeCCEEEEEE
Confidence            3345678888755443

>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1

Probab=99.44  E-value=2e-09  Score=86.79  Aligned_cols=244  Identities=7%  Similarity=0.038  Sum_probs=155.9

Q ss_pred             CcEEEEcCCCCcce-----eeccccccceEEEEeCCCC-CEEEEeeCCCeEEEEECCCCceeEEeeCCcccEEEEEECCC
Q 021247           40 ETVKLWRPDDMQLE-----RTNTGHCLGVVSVAAHPSG-IIAASASLDSFVRVFDVDTNASIATLEASPSEVWQMQFDPK  113 (315)
Q Consensus        40 ~~v~~w~~~~~~~~-----~~~~~h~~~v~~~~~~~~g-~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~v~~~~~~~~  113 (315)
                      +.|+.++.+.....     ..+......+..+.+++++ .++++-..++.|..+++........+.........++++|.
T Consensus        10 ~~I~~~~~~g~~~~~~~~~~~~~~~~~~~~gi~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~p~~ia~d~~   89 (267)
T 1npe_A           10 GKIERLPLERNTMKKTEAKAFLHIPAKVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTTIIRQDLGSPEGIALDHL   89 (267)
T ss_dssp             EEEEEEEESSSCBCGGGCEEEEEEEEEEEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEEEECTTCCCEEEEEEETT
T ss_pred             CeEEEEEecCcccccccceeeecCCCCcEEEEEEecCCCEEEEEECCCCEEEEEecCCCCcEEEEECCCCCccEEEEEec
Confidence            47787877654321     1111122356788999865 55566666789999999766543333333346788999998


Q ss_pred             CCeEEEEecCCCeEEEEecCCcceeeeecCCCCCCCCCCccCCCCcceEEEEECCCCCEE-EEecC--CCcEEEEEcccc
Q 021247          114 GTTLAVAGGGSASVKLWDTATWNLIATLSIPRPEGLKPTDKSSSKKFVLSVAWSPDGRRI-ACGSM--DGTISVFDVTRA  190 (315)
Q Consensus       114 ~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l-~~~s~--dg~i~i~d~~~~  190 (315)
                      +..++++....+.|.+++...........  .           .......++++|++..| ++...  .+.|..+++...
T Consensus        90 ~~~lyv~d~~~~~I~~~~~~g~~~~~~~~--~-----------~~~~P~~i~vd~~~g~lyv~~~~~~~~~I~~~~~dg~  156 (267)
T 1npe_A           90 GRTIFWTDSQLDRIEVAKMDGTQRRVLFD--T-----------GLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGT  156 (267)
T ss_dssp             TTEEEEEETTTTEEEEEETTSCSCEEEEC--S-----------SCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSC
T ss_pred             CCeEEEEECCCCEEEEEEcCCCCEEEEEE--C-----------CCCCccEEEEeeCCCEEEEEECCCCCcEEEEEecCCC
Confidence            77788887778899999986432211111  0           01235789999965555 44433  468888887543


Q ss_pred             eeeeeecCCccceEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCeeEEEeecccccEEEEEEcCCCCeEEEEeCCCcEEEE
Q 021247          191 KFLHHLEGHFMPVRSLVYSPVDPRVLFSASDDTHVHMYDAEGKSLVTAMSGHASWVLSVDASPDGAAITTGSSDRTVKLW  270 (315)
Q Consensus       191 ~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~d~~i~iw  270 (315)
                      ...............++++|.++.++++-...+.|.++|..+......... ......++.. .+.++++...++.|..+
T Consensus       157 ~~~~~~~~~~~~P~gia~d~~~~~lyv~d~~~~~I~~~~~~g~~~~~~~~~-~~~P~gi~~d-~~~lyva~~~~~~v~~~  234 (267)
T 1npe_A          157 NRRILAQDNLGLPNGLTFDAFSSQLCWVDAGTHRAECLNPAQPGRRKVLEG-LQYPFAVTSY-GKNLYYTDWKTNSVIAM  234 (267)
T ss_dssp             CCEEEECTTCSCEEEEEEETTTTEEEEEETTTTEEEEEETTEEEEEEEEEC-CCSEEEEEEE-TTEEEEEETTTTEEEEE
T ss_pred             CcEEEEECCCCCCcEEEEcCCCCEEEEEECCCCEEEEEecCCCceEEEecC-CCCceEEEEe-CCEEEEEECCCCeEEEE
Confidence            221111222345788999986667777777889999999986544333332 3345677765 44455555567899999


Q ss_pred             ecCccceehcccccc-cceEEEEEeeCCC
Q 021247          271 DLNMRAAMQSMTNHT-DQVWGVSFRPLGG  298 (315)
Q Consensus       271 d~~~~~~~~~~~~~~-~~v~~~~~s~~~~  298 (315)
                      |..+++.+.++.... ...+++++.|++.
T Consensus       235 d~~~g~~~~~i~~g~~~~p~gi~~~~~~~  263 (267)
T 1npe_A          235 DLAISKEMDTFHPHKQTRLYGITIALSQC  263 (267)
T ss_dssp             ETTTTEEEEEECCSSCCCCCCEEEECSCC
T ss_pred             eCCCCCceEEEccccccccceeeecCccC
Confidence            999888777765332 2477888998865

>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}

Probab=99.42  E-value=1.1e-10  Score=106.67  Aligned_cols=280  Identities=16%  Similarity=0.140  Sum_probs=175.3

Q ss_pred             cEEEEeeCCCcEEEEcCCCCcceeecccccc----------ce-EEEEeCCCCCEEEEeeCCCeEEEEECCCCceeEEee
Q 021247           31 ALLLTGSLDETVKLWRPDDMQLERTNTGHCL----------GV-VSVAAHPSGIIAASASLDSFVRVFDVDTNASIATLE   99 (315)
Q Consensus        31 ~~l~sgs~d~~v~~w~~~~~~~~~~~~~h~~----------~v-~~~~~~~~g~~l~s~~~d~~i~~w~~~~~~~~~~~~   99 (315)
                      ..++.++.++.|.-+|..+++..........          .+ ..+.+  .+..++.++.|+.|..+|..+++.+..+.
T Consensus        71 g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~--~~g~v~v~~~dg~l~AlDa~TG~~~W~~~  148 (689)
T 1yiq_A           71 GVMYTTGPFSVVYALDARDGRLIWKYDPQSDRHRAGEACCDAVNRGVAV--WKGKVYVGVLDGRLEAIDAKTGQRAWSVD  148 (689)
T ss_dssp             TEEEEECGGGCEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCEE--ETTEEEEECTTSEEEEEETTTCCEEEEEE
T ss_pred             CEEEEEcCCCeEEEEECCCCceeEEEcCCCCccccccccccCCCCccEE--ECCEEEEEccCCEEEEEECCCCCEeeeec
Confidence            4678888899999999988887665432211          00 01111  34577778889999999999999887765


Q ss_pred             CC-c-ccEEEEEECC--CCCeEEEEec-----CCCeEEEEecCCcceeeeecCCCCCCCCCCc----------cC-----
Q 021247          100 AS-P-SEVWQMQFDP--KGTTLAVAGG-----GSASVKLWDTATWNLIATLSIPRPEGLKPTD----------KS-----  155 (315)
Q Consensus       100 ~~-~-~~v~~~~~~~--~~~~~~~~~~-----~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~----------~~-----  155 (315)
                      .. . .....+...|  .+..+++..+     .++.|..||.++++.+..+............          ..     
T Consensus       149 ~~~~~~~~~~~~~sP~v~~g~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~~g~~w~  228 (689)
T 1yiq_A          149 TRADHKRSYTITGAPRVVNGKVVIGNGGAEFGVRGYVTAYDAETGKEAWRFYTVPGDPKLPPEGKGMEIAAKTWFGDAYV  228 (689)
T ss_dssp             CCSCTTSCCBCCSCCEEETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCCSHHHHHHHTTCCSSTHH
T ss_pred             CcCCCCCCccccCCcEEECCEEEEEeCCCccCCCCEEEEEECCCCcEEEEecccCCCcccccccccccccccccCCceee
Confidence            42 1 1101111111  1233444322     3689999999999998877532110000000          00     


Q ss_pred             ---CCCcceEEEEECCCCCEEEEecCCCc-------------------EEEEEcccceeeeeecC--Cc-------cceE
Q 021247          156 ---SSKKFVLSVAWSPDGRRIACGSMDGT-------------------ISVFDVTRAKFLHHLEG--HF-------MPVR  204 (315)
Q Consensus       156 ---~~~~~i~~~~~~~~~~~l~~~s~dg~-------------------i~i~d~~~~~~~~~~~~--~~-------~~v~  204 (315)
                         ........++++|+++.++.++.++.                   |..+|..+++.+-.+..  |.       .+..
T Consensus       229 ~~~~g~~~w~~~~~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~~y~~~v~AlD~~TG~~~W~~~~~~~d~wd~~~~~~~~  308 (689)
T 1yiq_A          229 EQGGGGTAWDSFAYDPELNLLYIGVGNGSLWDPKWRSQAKGDNLFLSSIVAVNADTGEYVWHYQTTPGDAWDYTATQHMI  308 (689)
T ss_dssp             HHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHHTTCSCCTTTTEEEEEETTTCCEEEEEESSTTCCSCCCCCSCEE
T ss_pred             ecCCCCccccceeEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEEccCCceeEeeecCCcccccccCCCCcE
Confidence               00011135788898889988887764                   99999999987755442  21       1121


Q ss_pred             EEEEcCCCCc---EEEEEeCCCeEEEEeCCCCeeEEEeecc-cccE----------------------------------
Q 021247          205 SLVYSPVDPR---VLFSASDDTHVHMYDAEGKSLVTAMSGH-ASWV----------------------------------  246 (315)
Q Consensus       205 ~~~~~~~~~~---~l~s~~~d~~i~~wd~~~~~~~~~~~~~-~~~i----------------------------------  246 (315)
                      ...... +++   .++.++.+|.++++|.++++++....-. ..+.                                  
T Consensus       309 l~d~~~-~G~~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~~~~~~~~~~pi~~~~~~~~~~~~~~~~~~p~~~G  387 (689)
T 1yiq_A          309 LAELPI-DGKPRKVLMQAPKNGFFYVIDRATGELLSAKGIVPQSWTKGMDMKTGRPILDEENAAYWKNGKRNLVTPAFWG  387 (689)
T ss_dssp             EEEEEE-TTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEEEETTTTEEEECHHHHCTTTSSSCEEESSCTTC
T ss_pred             EEeecc-CCcEEEEEEEECCCCeEEEEECCCCCEeccccccccccccccCccCCCcccchhhccccCCCCeeEeCCCccc
Confidence            112111 333   7888999999999999998876432110 0011                                  


Q ss_pred             ----EEEEEcCCCCeEEEEeC---------------------------------------------CCcEEEEecCccce
Q 021247          247 ----LSVDASPDGAAITTGSS---------------------------------------------DRTVKLWDLNMRAA  277 (315)
Q Consensus       247 ----~~~~~~~~~~~l~s~~~---------------------------------------------d~~i~iwd~~~~~~  277 (315)
                          ..++++|+..++++...                                             +|.|+.||+++++.
T Consensus       388 g~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~~~~~~g~l~A~D~~tG~~  467 (689)
T 1yiq_A          388 AHDWQPMSYNPDTGLVYIPAHIMSAYYEHIPEAPKRNPFKSMYQLGLRTGMMPEGAEGLLEMAKSWSGKLIAWDPVKQQA  467 (689)
T ss_dssp             SSCSSCCEEETTTTEEEEEEEECCEEEECCSSCCCCCSCTTSCCCSSEECCCCSSHHHHHHHHTTCEEEEEEEETTTTEE
T ss_pred             ccCCCcceECCCCCEEEEeccccceeeeeccccccccccccccccCccccccCcccccCCCCCCCcceeEEEEECCCCCe
Confidence                12678888777776532                                             37799999999887


Q ss_pred             ehcccccccceEEEEEeeCCCEEEEEeCCCcEEEeec
Q 021247          278 MQSMTNHTDQVWGVSFRPLGGRVVSVSDDKSISLYEY  314 (315)
Q Consensus       278 ~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~i~i~~~  314 (315)
                      +-+...+ .+.+.-.++..+..|+.++.||.++.||.
T Consensus       468 ~W~~~~~-~~~~~g~~~tagglvf~gt~dg~l~a~D~  503 (689)
T 1yiq_A          468 AWEVPYV-TIFNGGTLSTAGNLVFEGSADGRVIAYAA  503 (689)
T ss_dssp             EEEEEES-SSCCCCEEEETTTEEEEECTTSEEEEEET
T ss_pred             EeEccCC-CCccCccceECCCEEEEECCCCcEEEEEC
Confidence            6555443 33444567788899999999999999985

>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1

Probab=99.39  E-value=1.5e-10  Score=105.48  Aligned_cols=278  Identities=13%  Similarity=0.101  Sum_probs=179.1

Q ss_pred             cEEEEeeCCCcEEEEcCCCCcceeecccccc-----------ceEEEEeCCCCCEEEEeeCCCeEEEEECCCCceeEEee
Q 021247           31 ALLLTGSLDETVKLWRPDDMQLERTNTGHCL-----------GVVSVAAHPSGIIAASASLDSFVRVFDVDTNASIATLE   99 (315)
Q Consensus        31 ~~l~sgs~d~~v~~w~~~~~~~~~~~~~h~~-----------~v~~~~~~~~g~~l~s~~~d~~i~~w~~~~~~~~~~~~   99 (315)
                      ..++.++.++.|.-+|..+++..........           ....+.+  .+..++.++.|+.+..+|..+++.+..+.
T Consensus        78 g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~a~--~~~~v~v~~~dg~l~alD~~tG~~~W~~~  155 (677)
T 1kb0_A           78 GIMYVSASWSVVHAIDTRTGNRIWTYDPQIDRSTGFKGCCDVVNRGVAL--WKGKVYVGAWDGRLIALDAATGKEVWHQN  155 (677)
T ss_dssp             TEEEEECGGGCEEEEETTTTEEEEEECCCCCGGGGGGSSSCSCCCCCEE--ETTEEEEECTTSEEEEEETTTCCEEEEEE
T ss_pred             CEEEEECCCCeEEEEECCCCcEEEEEcCCCCccccccccccCCCCCceE--ECCEEEEEcCCCEEEEEECCCCCEEeeec
Confidence            4577888889999999988877655432110           0011122  35577778889999999999999888776


Q ss_pred             CC-c----ccEEE-EEECCCCCeEEEEec-----CCCeEEEEecCCcceeeeecCCCCCCCCCCc-----------c---
Q 021247          100 AS-P----SEVWQ-MQFDPKGTTLAVAGG-----GSASVKLWDTATWNLIATLSIPRPEGLKPTD-----------K---  154 (315)
Q Consensus       100 ~~-~----~~v~~-~~~~~~~~~~~~~~~-----~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~-----------~---  154 (315)
                      .. .    ..+.. ...  .+..+++...     .++.|..+|..+++.+..+....+....+..           .   
T Consensus       156 ~~~~~~~~~~~~~~p~v--~~~~v~v~~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~~~~~~~~~~~~~g~~~w~~~g  233 (677)
T 1kb0_A          156 TFEGQKGSLTITGAPRV--FKGKVIIGNGGAEYGVRGYITAYDAETGERKWRWFSVPGDPSKPFEDESMKRAARTWDPSG  233 (677)
T ss_dssp             TTTTCCSSCBCCSCCEE--ETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTTSCGGG
T ss_pred             CCcCcCcCcccccCcEE--ECCEEEEEecccccCCCCEEEEEECCCCcEEEEeccCCCCccccccccccccccccccccC
Confidence            54 1    11110 001  1334444333     2689999999999999887654322100000           0   


Q ss_pred             -----CCCCcceEEEEECCCCCEEEEecCCC-------------------cEEEEEcccceeeeeecC--Cc-------c
Q 021247          155 -----SSSKKFVLSVAWSPDGRRIACGSMDG-------------------TISVFDVTRAKFLHHLEG--HF-------M  201 (315)
Q Consensus       155 -----~~~~~~i~~~~~~~~~~~l~~~s~dg-------------------~i~i~d~~~~~~~~~~~~--~~-------~  201 (315)
                           .........++++|++..++.++.++                   .|..+|..+++.+-.+..  |.       .
T Consensus       234 ~~~~~~~g~~~w~~~~~d~~~~~vy~~~~~~~~w~~~~~~~~~gd~~~~~sv~AlD~~TG~~~W~~~~~~~d~wd~~~~~  313 (677)
T 1kb0_A          234 KWWEAGGGGTMWDSMTFDAELNTMYVGTGNGSPWSHKVRSPKGGDNLYLASIVALDPDTGKYKWHYQETPGDNWDYTSTQ  313 (677)
T ss_dssp             CHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCCCCCS
T ss_pred             ceeEeCCCcccccceeEcCCCCEEEEECCCCccccCCCCCccCCCCeeeEEEEEEECCCCCEEEEEecCCCcccccccCC
Confidence                 00011123578889888888877664                   499999999987655432  21       1


Q ss_pred             ceEEEEEcCCCC---cEEEEEeCCCeEEEEeCCCCeeEEEeeccc-cc----------E---------------------
Q 021247          202 PVRSLVYSPVDP---RVLFSASDDTHVHMYDAEGKSLVTAMSGHA-SW----------V---------------------  246 (315)
Q Consensus       202 ~v~~~~~~~~~~---~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~-~~----------i---------------------  246 (315)
                      ....+.... ++   ..++.++.+|.++++|.++++++....-.. .+          +                     
T Consensus       314 ~p~l~~~~~-dG~~~~~l~~~~~~G~l~~lD~~tG~~l~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~P~~~G~  392 (677)
T 1kb0_A          314 PMILADIKI-AGKPRKVILHAPKNGFFFVLDRTNGKFISAKNFVPVNWASGYDKHGKPIGIAAARDGSKPQDAVPGPYGA  392 (677)
T ss_dssp             CCEEEEEEE-TTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEEECTTSCEEECGGGGCTTSCEECSSCTTCS
T ss_pred             CcEEEeccc-CCcEeeEEEEECCCCEEEEEECCCCCEeccccccccCcccccCCCCceeeccccCcCCCccEECcCcccc
Confidence            122222222 34   678899999999999999988775543110 11          1                     


Q ss_pred             ---EEEEEcCCCCeEEEEeC-------------------------------------------CCcEEEEecCccceehc
Q 021247          247 ---LSVDASPDGAAITTGSS-------------------------------------------DRTVKLWDLNMRAAMQS  280 (315)
Q Consensus       247 ---~~~~~~~~~~~l~s~~~-------------------------------------------d~~i~iwd~~~~~~~~~  280 (315)
                         ..++++|+..++++...                                           .+.|..||+.+++.+-+
T Consensus       393 ~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~l~A~D~~tG~~~W~  472 (677)
T 1kb0_A          393 HNWHPMSFNPQTGLVYLPAQNVPVNLMDDKKWEFNQAGPGKPQSGTGWNTAKFFNAEPPKSKPFGRLLAWDPVAQKAAWS  472 (677)
T ss_dssp             SCSSCCEEETTTTEEEEEEEECCCEEEECTTCCTTCCCTTSTTGGGTCCCCEEECSSCCCSCCEEEEEEEETTTTEEEEE
T ss_pred             cCCCCceEcCCCCEEEEeChhcceeeecccccccccccccccccccccccccccccccCCCCCccEEEEEeCCCCcEEee
Confidence               14678888887777543                                           27899999999876544


Q ss_pred             ccccccceEEEEEeeCCCEEEEEeCCCcEEEeec
Q 021247          281 MTNHTDQVWGVSFRPLGGRVVSVSDDKSISLYEY  314 (315)
Q Consensus       281 ~~~~~~~v~~~~~s~~~~~l~s~~~d~~i~i~~~  314 (315)
                      .. +..++++..+++++..++.++.||.+++||.
T Consensus       473 ~~-~~~~~~~g~~~~~g~~v~~g~~dg~l~a~D~  505 (677)
T 1kb0_A          473 VE-HVSPWNGGTLTTAGNVVFQGTADGRLVAYHA  505 (677)
T ss_dssp             EE-ESSSCCCCEEEETTTEEEEECTTSEEEEEET
T ss_pred             cC-CCCCCcCcceEeCCCEEEEECCCCcEEEEEC
Confidence            43 3345566678888899999999999999985

>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}

Probab=99.39  E-value=8.4e-15  Score=124.13  Aligned_cols=253  Identities=14%  Similarity=0.034  Sum_probs=133.5

Q ss_pred             CcEEEEeeCCCcEEEEcCCCCcceeeccccccceEEEEeCCCCCEEEEeeCCCeEEEEECCCCceeEEeeCCcc-cEE-E
Q 021247           30 PALLLTGSLDETVKLWRPDDMQLERTNTGHCLGVVSVAAHPSGIIAASASLDSFVRVFDVDTNASIATLEASPS-EVW-Q  107 (315)
Q Consensus        30 ~~~l~sgs~d~~v~~w~~~~~~~~~~~~~h~~~v~~~~~~~~g~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~-~v~-~  107 (315)
                      ...+++++.||.|+.||..+++.......  .++.+..+..++.++++++.|+.|+.||..+++.+.....+.. .+. .
T Consensus         9 ~~~v~~gs~dg~v~a~d~~tG~~~W~~~~--~~~~s~p~~~~g~~~v~~s~dg~l~a~d~~tG~~~w~~~~~~~~~~~~s   86 (369)
T 2hz6_A            9 ETLLFVSTLDGSLHAVSKRTGSIKWTLKE--DPVLQVPTHVEEPAFLPDPNDGSLYTLGSKNNEGLTKLPFTIPELVQAS   86 (369)
T ss_dssp             TTEEEEEETTSEEEEEETTTCCEEEEEEC--CCSCCCC-----CCEEECTTTCCEEEC-----CCSEECSCCHHHHHTTC
T ss_pred             CCEEEEEcCCCEEEEEECCCCCEEEEecC--CCceecceEcCCCEEEEeCCCCEEEEEECCCCceeeeeeccCccccccC
Confidence            35799999999999999999888776654  4555555667787888888999999999998887665543311 110 0


Q ss_pred             EEECCCCCeEEEEecCCCeEEEEecCCcceeeeecCCCCCCCCCCccCCCCcceEEEEECCCCCEEEEecCCCcEEEEEc
Q 021247          108 MQFDPKGTTLAVAGGGSASVKLWDTATWNLIATLSIPRPEGLKPTDKSSSKKFVLSVAWSPDGRRIACGSMDGTISVFDV  187 (315)
Q Consensus       108 ~~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~s~dg~i~i~d~  187 (315)
                      ..+. .+. .+++++.++.+..||.++++.+..+..+.                 ...++|++..+++++.++.|+.||.
T Consensus        87 p~~~-~~~-~v~~g~~dg~v~a~D~~tG~~~w~~~~~~-----------------~~~~~p~~~~v~~~~~dg~v~a~d~  147 (369)
T 2hz6_A           87 PCRS-SDG-ILYMGKKQDIWYVIDLLTGEKQQTLSSAF-----------------ADSLSPSTSLLYLGRTEYTITMYDT  147 (369)
T ss_dssp             SCC-------CCCCEEEEEEEEECCC---------------------------------------EEEEEEEEEEECCCS
T ss_pred             ceEe-cCC-EEEEEeCCCEEEEEECCCCcEEEEecCCC-----------------cccccccCCEEEEEecCCEEEEEEC
Confidence            0011 223 34566778999999999988876654221                 1233467888999999999999999


Q ss_pred             ccceeeeeecCCccceEEEEEcCCC--CcEEEEEeCCCeEEEEeCCCCeeEEEeecccccEEE-EEEcCCCCeE----EE
Q 021247          188 TRAKFLHHLEGHFMPVRSLVYSPVD--PRVLFSASDDTHVHMYDAEGKSLVTAMSGHASWVLS-VDASPDGAAI----TT  260 (315)
Q Consensus       188 ~~~~~~~~~~~~~~~v~~~~~~~~~--~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~i~~-~~~~~~~~~l----~s  260 (315)
                      ++++.+-.+..+.  .....+.+..  ...++.++.|+.++.||.++++.+-...- ..++.. ..+++++...    +.
T Consensus       148 ~tG~~~W~~~~~~--~~~~~~~~~~~~~~~v~~~~~dg~v~a~d~~tG~~~W~~~~-~~pv~~~~~~~~dg~~~v~~~~~  224 (369)
T 2hz6_A          148 KTRELRWNATYFD--YAASLPEDDVDYKMSHFVSNGDGLVVTVDSESGDVLWIQNY-ASPVVAFYVWQREGLRKVMHINV  224 (369)
T ss_dssp             SSSSCCCEEEEEE--ECCBCCCCCTTCCCCEEEEETSCEEEEECTTTCCEEEEEEC-SSCEEEEEECTTSSCEEECCEEE
T ss_pred             CCCCEEEeEeccc--ccCccccCCccccceEEEECCCCEEEEEECCCCcEEEEecC-CCceEEEEEecCCceEeccceee
Confidence            9887654433211  1111222210  14577788999999999998877655442 333433 3445555321    11


Q ss_pred             EeCCCcEEEEecCccc----eehcccccccceEEEEEee--CCCEEEEEeCCCcEEEee
Q 021247          261 GSSDRTVKLWDLNMRA----AMQSMTNHTDQVWGVSFRP--LGGRVVSVSDDKSISLYE  313 (315)
Q Consensus       261 ~~~d~~i~iwd~~~~~----~~~~~~~~~~~v~~~~~s~--~~~~l~s~~~d~~i~i~~  313 (315)
                      +  ++.++.+|..+++    .+-.... .+.+.    +|  .+..|+.++.||.+..++
T Consensus       225 ~--~~~l~~ld~~tG~~~~~~~W~~~~-~~~~~----sp~~~~g~lyv~~~~G~l~al~  276 (369)
T 2hz6_A          225 A--VETLRYLTFMSGEVGRITKWKYPF-PKETE----AKSKLTPTLYVGKYSTSLYASP  276 (369)
T ss_dssp             E--HHHHHHHHHHHHHHHHHHTSCCCC-CCHHH----HHHHSEEEECBEECSSCEECCE
T ss_pred             c--ccceeeeehhcCCcccceeeeecc-Ccccc----ccccccceEEEecccCCEEecC
Confidence            1  3445666665554    2211111 01110    11  234677777777776654

>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}

Probab=99.39  E-value=6.2e-10  Score=91.65  Aligned_cols=224  Identities=13%  Similarity=0.069  Sum_probs=143.4

Q ss_pred             ccceEEEEEeecCCCCCcEEEEeeCCCcEEEEcCCCCcceeeccccccceEEEEeCCCCCEEEEeeCCCeEEEEECCCCc
Q 021247           14 EESVWAVTWVPATETRPALLLTGSLDETVKLWRPDDMQLERTNTGHCLGVVSVAAHPSGIIAASASLDSFVRVFDVDTNA   93 (315)
Q Consensus        14 ~~~v~~v~~~~~~~~~~~~l~sgs~d~~v~~w~~~~~~~~~~~~~h~~~v~~~~~~~~g~~l~s~~~d~~i~~w~~~~~~   93 (315)
                      .....+..|.|.++   .+++++..++.|..|+.. .+. ..+..+...+..+.++++|+++++...++.|.+|+.. ++
T Consensus        44 ~~~~egp~~~~~g~---~l~~~d~~~~~i~~~~~~-g~~-~~~~~~~~~~~gl~~d~dG~l~v~~~~~~~v~~~~~~-g~  117 (305)
T 3dr2_A           44 ATWSEGPAWWEAQR---TLVWSDLVGRRVLGWRED-GTV-DVLLDATAFTNGNAVDAQQRLVHCEHGRRAITRSDAD-GQ  117 (305)
T ss_dssp             CSSEEEEEEEGGGT---EEEEEETTTTEEEEEETT-SCE-EEEEESCSCEEEEEECTTSCEEEEETTTTEEEEECTT-SC
T ss_pred             CcCccCCeEeCCCC---EEEEEECCCCEEEEEeCC-CCE-EEEeCCCCccceeeECCCCCEEEEECCCCEEEEECCC-CC
Confidence            34567889998764   368888889999999873 432 3333445668899999999988776667889999986 44


Q ss_pred             eeEEeeCC-----cccEEEEEECCCCCeEEEE----ecC-------------CCeEEEEecCCcceeeeecCCCCCCCCC
Q 021247           94 SIATLEAS-----PSEVWQMQFDPKGTTLAVA----GGG-------------SASVKLWDTATWNLIATLSIPRPEGLKP  151 (315)
Q Consensus        94 ~~~~~~~~-----~~~v~~~~~~~~~~~~~~~----~~~-------------d~~i~~~d~~~~~~~~~~~~~~~~~~~~  151 (315)
                      . ..+...     ...+..+.++|+|+.+ ++    |..             .+.|..+|..+++.....          
T Consensus       118 ~-~~~~~~~~~~~~~~~~~i~~d~dG~l~-~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~~g~~~~~~----------  185 (305)
T 3dr2_A          118 A-HLLVGRYAGKRLNSPNDLIVARDGAIW-FTDPPFGLRKPSQGCPADPELAHHSVYRLPPDGSPLQRMA----------  185 (305)
T ss_dssp             E-EEEECEETTEECSCCCCEEECTTSCEE-EECCSGGGSCGGGSCCCCCSSSCEEEEEECSSSCCCEEEE----------
T ss_pred             E-EEEEeccCCCccCCCCCEEECCCCCEE-EeCcCCCccccccccccccccCCCeEEEEcCCCCcEEEEe----------
Confidence            3 222111     1235678899998744 44    221             245777776554433211          


Q ss_pred             CccCCCCcceEEEEECCCCCEEEEecCC------CcEEEEEcccceee--eee-cCCccceEEEEEcCCCCcEEEEEeCC
Q 021247          152 TDKSSSKKFVLSVAWSPDGRRIACGSMD------GTISVFDVTRAKFL--HHL-EGHFMPVRSLVYSPVDPRVLFSASDD  222 (315)
Q Consensus       152 ~~~~~~~~~i~~~~~~~~~~~l~~~s~d------g~i~i~d~~~~~~~--~~~-~~~~~~v~~~~~~~~~~~~l~s~~~d  222 (315)
                           .......++|+|+++.|+.+...      +.|..||+......  ..+ .........+.+.+ ++++.++ ..+
T Consensus       186 -----~~~~p~gl~~spdg~~lyv~~~~~~~~~~~~i~~~~~~~~~l~~~~~~~~~~~~~pdgi~~d~-~G~lwv~-~~~  258 (305)
T 3dr2_A          186 -----DLDHPNGLAFSPDEQTLYVSQTPEQGHGSVEITAFAWRDGALHDRRHFASVPDGLPDGFCVDR-GGWLWSS-SGT  258 (305)
T ss_dssp             -----EESSEEEEEECTTSSEEEEEECCC---CCCEEEEEEEETTEEEEEEEEECCSSSCCCSEEECT-TSCEEEC-CSS
T ss_pred             -----cCCCCcceEEcCCCCEEEEEecCCcCCCCCEEEEEEecCCCccCCeEEEECCCCCCCeEEECC-CCCEEEe-cCC
Confidence                 01125689999999977666544      68999998654311  111 11223345677877 4554444 444


Q ss_pred             CeEEEEeCCCCeeEEEeecccccEEEEEEcCCCCeEEEEeCCC
Q 021247          223 THVHMYDAEGKSLVTAMSGHASWVLSVDASPDGAAITTGSSDR  265 (315)
Q Consensus       223 ~~i~~wd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~d~  265 (315)
                       .|.+|+.++ +.+..+..+. .+.+++|+|+++.|..++.++
T Consensus       259 -gv~~~~~~g-~~~~~~~~~~-~~~~~~f~~d~~~L~it~~~~  298 (305)
T 3dr2_A          259 -GVCVFDSDG-QLLGHIPTPG-TASNCTFDQAQQRLFITGGPC  298 (305)
T ss_dssp             -EEEEECTTS-CEEEEEECSS-CCCEEEECTTSCEEEEEETTE
T ss_pred             -cEEEECCCC-CEEEEEECCC-ceeEEEEeCCCCEEEEEcCCe
Confidence             499999854 4555554433 578899999988887777654

>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}

Probab=99.37  E-value=8.8e-10  Score=93.38  Aligned_cols=223  Identities=13%  Similarity=0.147  Sum_probs=145.4

Q ss_pred             CCCCEE-EEeeCCCeEEEEECCCC----ceeEEee-------CCcccEEEEEECCCCCeEEEEecCC------CeEEEEe
Q 021247           70 PSGIIA-ASASLDSFVRVFDVDTN----ASIATLE-------ASPSEVWQMQFDPKGTTLAVAGGGS------ASVKLWD  131 (315)
Q Consensus        70 ~~g~~l-~s~~~d~~i~~w~~~~~----~~~~~~~-------~~~~~v~~~~~~~~~~~~~~~~~~d------~~i~~~d  131 (315)
                      +++++| +++-.++.|+++|+.+.    +...+++       .....--.+...|++  +++++.++      +.+.++|
T Consensus        93 ~~r~~l~v~~l~s~~I~viD~~t~p~~p~~~k~ie~~~~~~~~g~s~Ph~~~~~pdG--i~Vs~~g~~~g~~~g~v~vlD  170 (462)
T 2ece_A           93 IERRFLIVPGLRSSRIYIIDTKPNPREPKIIKVIEPEEVKKVSGYSRLHTVHCGPDA--IYISALGNEEGEGPGGILMLD  170 (462)
T ss_dssp             CCSCEEEEEBTTTCCEEEEECCSCTTSCEEEEEECHHHHHHHHCEEEEEEEEECSSC--EEEEEEEETTSCSCCEEEEEC
T ss_pred             ccCCEEEEccCCCCeEEEEECCCCCCCceeeeeechhhcccccCCCcccceeECCCe--EEEEcCCCcCCCCCCeEEEEE
Confidence            667655 56777889999999755    4445552       111233456678988  55565555      7899999


Q ss_pred             cCCcceeeeecCCCCCCCCCCccCCCCcceEEEEECCCCCEEEEec-------------------CCCcEEEEEccccee
Q 021247          132 TATWNLIATLSIPRPEGLKPTDKSSSKKFVLSVAWSPDGRRIACGS-------------------MDGTISVFDVTRAKF  192 (315)
Q Consensus       132 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~s-------------------~dg~i~i~d~~~~~~  192 (315)
                      ..+.+.+.++.......          ..-..+-|+|+++.+++..                   .+.+|.+||+.+++.
T Consensus       171 ~~T~~v~~~~~~~~~~~----------~~~Yd~~~~p~~~~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~~~k~  240 (462)
T 2ece_A          171 HYSFEPLGKWEIDRGDQ----------YLAYDFWWNLPNEVLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLRKRKR  240 (462)
T ss_dssp             TTTCCEEEECCSBCTTC----------CCCCCEEEETTTTEEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEETTTTEE
T ss_pred             CCCCeEEEEEccCCCCc----------cccceEEECCCCCEEEEccCcCccccccccchhhhhhccCCEEEEEECCCCcE
Confidence            99999998886442211          1123577899999888774                   367999999998887


Q ss_pred             eeeecCC--ccceEEEEE--cCCCCcEEEEEe-----CCCeEEEEeCCCCeeE--EE--eecc----------------c
Q 021247          193 LHHLEGH--FMPVRSLVY--SPVDPRVLFSAS-----DDTHVHMYDAEGKSLV--TA--MSGH----------------A  243 (315)
Q Consensus       193 ~~~~~~~--~~~v~~~~~--~~~~~~~l~s~~-----~d~~i~~wd~~~~~~~--~~--~~~~----------------~  243 (315)
                      +..+...  ....+.+.|  +|++...++++-     .++.|.+|....+...  +.  +...                .
T Consensus       241 ~~tI~vg~~g~~P~~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d~g~~~~~~vIdi~~~~v~~~lp~~~~~f~~~~  320 (462)
T 2ece_A          241 IHSLTLGEENRMALELRPLHDPTKLMGFINMVVSLKDLSSSIWLWFYEDGKWNAEKVIEIPAEPLEGNLPEILKPFKAVP  320 (462)
T ss_dssp             EEEEESCTTEEEEEEEEECSSTTCCEEEEEEEEETTTCCEEEEEEEEETTEEEEEEEEEECCEECCSSCCGGGGGGTEEC
T ss_pred             eeEEecCCCCCccceeEeeECCCCCEEEEEEeeeccCCCceEEEEEecCCceeEEEEEeCCCccccccccccccccccCC
Confidence            7776542  123455655  885555555555     6778877665443211  11  1110                1


Q ss_pred             ccEEEEEEcCCCCeEEEEeC-CCcEEEEecCcc---ceehcccccc--------------cceEEEEEeeCCCEEEEEe
Q 021247          244 SWVLSVDASPDGAAITTGSS-DRTVKLWDLNMR---AAMQSMTNHT--------------DQVWGVSFRPLGGRVVSVS  304 (315)
Q Consensus       244 ~~i~~~~~~~~~~~l~s~~~-d~~i~iwd~~~~---~~~~~~~~~~--------------~~v~~~~~s~~~~~l~s~~  304 (315)
                      ..+..+.++|+|++|.++.. .+.|.+||+...   +.+..+....              +....+.++|||++|+.+.
T Consensus       321 ~~pa~I~lS~DGrfLYVSnrg~d~VavfdV~d~~~~~lv~~I~tGG~~~~~~~~~G~~~~ggPr~~~lSpDGk~LyVaN  399 (462)
T 2ece_A          321 PLVTDIDISLDDKFLYLSLWGIGEVRQYDISNPFKPVLTGKVKLGGIFHRADHPAGHKLTGAPQMLEISRDGRRVYVTN  399 (462)
T ss_dssp             CCCCCEEECTTSCEEEEEETTTTEEEEEECSSTTSCEEEEEEECBTTTTCBCCTTSCCCCSCCCCEEECTTSSEEEEEC
T ss_pred             CceeEEEECCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEEEEeCCeeccccccccccCCCCCCEEEEcCCCCEEEEEc
Confidence            34678999999998866554 678999998522   3333332210              1357899999999998887

>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A

Probab=99.36  E-value=2.1e-09  Score=91.08  Aligned_cols=264  Identities=11%  Similarity=0.074  Sum_probs=161.4

Q ss_pred             cEEEEeeCCCcEEEEcCCCCcceeeccccccceEEEEeCCCCCEEEEeeCCCeEEEEECCCCceeEEeeCCcccE-----
Q 021247           31 ALLLTGSLDETVKLWRPDDMQLERTNTGHCLGVVSVAAHPSGIIAASASLDSFVRVFDVDTNASIATLEASPSEV-----  105 (315)
Q Consensus        31 ~~l~sgs~d~~v~~w~~~~~~~~~~~~~h~~~v~~~~~~~~g~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~v-----  105 (315)
                      ..++.++.++.|..+|.++++.................  .+..++.++.++.+..+|..+++.+..........     
T Consensus       104 ~~v~v~~~~g~l~a~d~~tG~~~W~~~~~~~~~~~p~~--~~~~v~v~~~~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~  181 (376)
T 3q7m_A          104 GHVYIGSEKAQVYALNTSDGTVAWQTKVAGEALSRPVV--SDGLVLIHTSNGQLQALNEADGAVKWTVNLDMPSLSLRGE  181 (376)
T ss_dssp             TEEEEEETTSEEEEEETTTCCEEEEEECSSCCCSCCEE--ETTEEEEECTTSEEEEEETTTCCEEEEEECCC-----CCC
T ss_pred             CEEEEEcCCCEEEEEECCCCCEEEEEeCCCceEcCCEE--ECCEEEEEcCCCeEEEEECCCCcEEEEEeCCCCceeecCC
Confidence            36888899999999999888776544322111111111  13466778889999999999998877665432111     


Q ss_pred             EEEEECCCCCeEEEEecCCCeEEEEecCCcceeeeecCCCCCCCCCCccC--CCCcceEEEEECCCCCEEEEecCCCcEE
Q 021247          106 WQMQFDPKGTTLAVAGGGSASVKLWDTATWNLIATLSIPRPEGLKPTDKS--SSKKFVLSVAWSPDGRRIACGSMDGTIS  183 (315)
Q Consensus       106 ~~~~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~i~~~~~~~~~~~l~~~s~dg~i~  183 (315)
                      ......  +.. ++.+..++.+..+|..+++.+.......+.+.......  ....++    .  .+..++.++.++.+.
T Consensus       182 ~~~~~~--~~~-v~~g~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~p~----~--~~~~v~~~~~~g~l~  252 (376)
T 3q7m_A          182 SAPTTA--FGA-AVVGGDNGRVSAVLMEQGQMIWQQRISQATGSTEIDRLSDVDTTPV----V--VNGVVFALAYNGNLT  252 (376)
T ss_dssp             CCCEEE--TTE-EEECCTTTEEEEEETTTCCEEEEEECCC-----------CCCCCCE----E--ETTEEEEECTTSCEE
T ss_pred             CCcEEE--CCE-EEEEcCCCEEEEEECCCCcEEEEEecccCCCCcccccccccCCCcE----E--ECCEEEEEecCcEEE
Confidence            111111  233 45567789999999999998877755432111000000  000011    1  246777788899999


Q ss_pred             EEEcccceeeeeecCCccceEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCeeEEEeec-ccccEEEEEEcCCCCeEEEEe
Q 021247          184 VFDVTRAKFLHHLEGHFMPVRSLVYSPVDPRVLFSASDDTHVHMYDAEGKSLVTAMSG-HASWVLSVDASPDGAAITTGS  262 (315)
Q Consensus       184 i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~-~~~~i~~~~~~~~~~~l~s~~  262 (315)
                      .+|..+++.+-....  .....+...   +..++.++.++.+..+|.++++.+-.... ....+.....  .+..|+.++
T Consensus       253 ~~d~~tG~~~w~~~~--~~~~~~~~~---~~~l~~~~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~--~~~~l~v~~  325 (376)
T 3q7m_A          253 ALDLRSGQIMWKREL--GSVNDFIVD---GNRIYLVDQNDRVMALTIDGGVTLWTQSDLLHRLLTSPVL--YNGNLVVGD  325 (376)
T ss_dssp             EEETTTCCEEEEECC--CCEEEEEEE---TTEEEEEETTCCEEEEETTTCCEEEEECTTTTSCCCCCEE--ETTEEEEEC
T ss_pred             EEECCCCcEEeeccC--CCCCCceEE---CCEEEEEcCCCeEEEEECCCCcEEEeecccCCCcccCCEE--ECCEEEEEe
Confidence            999998887655432  223333332   34677778889999999998876654431 1111222222  245788889


Q ss_pred             CCCcEEEEecCccceehcccccccceEEEEEeeCCCEEEEEeCCCcEEEee
Q 021247          263 SDRTVKLWDLNMRAAMQSMTNHTDQVWGVSFRPLGGRVVSVSDDKSISLYE  313 (315)
Q Consensus       263 ~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~i~i~~  313 (315)
                      .+|.+.++|..+++.+.........+.+.-.. .+..|+.++.+|.|..|+
T Consensus       326 ~~g~l~~~d~~tG~~~~~~~~~~~~~~~~~~~-~~~~l~v~~~~G~l~~~~  375 (376)
T 3q7m_A          326 SEGYLHWINVEDGRFVAQQKVDSSGFQTEPVA-ADGKLLIQAKDGTVYSIT  375 (376)
T ss_dssp             TTSEEEEEETTTCCEEEEEECCTTCBCSCCEE-ETTEEEEEBTTSCEEEEE
T ss_pred             CCCeEEEEECCCCcEEEEEecCCCcceeCCEE-ECCEEEEEeCCCEEEEEe
Confidence            99999999999988765554322333221111 256889999999999987

>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}

Probab=99.36  E-value=7e-10  Score=101.35  Aligned_cols=264  Identities=13%  Similarity=0.171  Sum_probs=162.6

Q ss_pred             cEEEEeeCCCcEEEEcCCCCcceeeccc--cccceEEEEeCC---CCCEEEEee-----CCCeEEEEECCCCceeEEeeC
Q 021247           31 ALLLTGSLDETVKLWRPDDMQLERTNTG--HCLGVVSVAAHP---SGIIAASAS-----LDSFVRVFDVDTNASIATLEA  100 (315)
Q Consensus        31 ~~l~sgs~d~~v~~w~~~~~~~~~~~~~--h~~~v~~~~~~~---~g~~l~s~~-----~d~~i~~w~~~~~~~~~~~~~  100 (315)
                      ..++.++.|+.|..+|..+++.......  +......+...|   ++.+++..+     .++.|+.||..+++.+..+..
T Consensus       122 g~v~v~~~dg~l~AlDa~TG~~~W~~~~~~~~~~~~~~~~sP~v~~g~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~  201 (689)
T 1yiq_A          122 GKVYVGVLDGRLEAIDAKTGQRAWSVDTRADHKRSYTITGAPRVVNGKVVIGNGGAEFGVRGYVTAYDAETGKEAWRFYT  201 (689)
T ss_dssp             TEEEEECTTSEEEEEETTTCCEEEEEECCSCTTSCCBCCSCCEEETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEES
T ss_pred             CEEEEEccCCEEEEEECCCCCEeeeecCcCCCCCCccccCCcEEECCEEEEEeCCCccCCCCEEEEEECCCCcEEEEecc
Confidence            4688899999999999998887654432  111111111122   455554332     378999999999998877653


Q ss_pred             Cc------------------------------ccE-EEEEECCCCCeEEEEecCCC-------------------eEEEE
Q 021247          101 SP------------------------------SEV-WQMQFDPKGTTLAVAGGGSA-------------------SVKLW  130 (315)
Q Consensus       101 ~~------------------------------~~v-~~~~~~~~~~~~~~~~~~d~-------------------~i~~~  130 (315)
                      .+                              ..+ ..++++|+...++ .+..++                   .|..+
T Consensus       202 ~~~~p~~~~~~~~~~~~~~~~~g~~w~~~~~g~~~w~~~~~d~~~~~vy-~~~~~g~~w~~~~~~~~~gd~~y~~~v~Al  280 (689)
T 1yiq_A          202 VPGDPKLPPEGKGMEIAAKTWFGDAYVEQGGGGTAWDSFAYDPELNLLY-IGVGNGSLWDPKWRSQAKGDNLFLSSIVAV  280 (689)
T ss_dssp             SCCCTTSCCCSHHHHHHHTTCCSSTHHHHCEECCCCSCEEEETTTTEEE-EECCCEESSCHHHHHTTCSCCTTTTEEEEE
T ss_pred             cCCCcccccccccccccccccCCceeeecCCCCccccceeEcCCCCEEE-EeCCCCCccccCCCCCCCCCceeeeeEEEE
Confidence            11                              011 1467888777654 455554                   49999


Q ss_pred             ecCCcceeeeecCCCCCCCCCCccCCCCcceEEEEECCCCC---EEEEecCCCcEEEEEcccceeeeeecCCc-------
Q 021247          131 DTATWNLIATLSIPRPEGLKPTDKSSSKKFVLSVAWSPDGR---RIACGSMDGTISVFDVTRAKFLHHLEGHF-------  200 (315)
Q Consensus       131 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~---~l~~~s~dg~i~i~d~~~~~~~~~~~~~~-------  200 (315)
                      |.++++.+..+........    ...............+|+   .++.++.+|.++++|..+++.+....-..       
T Consensus       281 D~~TG~~~W~~~~~~~d~w----d~~~~~~~~l~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~~~~  356 (689)
T 1yiq_A          281 NADTGEYVWHYQTTPGDAW----DYTATQHMILAELPIDGKPRKVLMQAPKNGFFYVIDRATGELLSAKGIVPQSWTKGM  356 (689)
T ss_dssp             ETTTCCEEEEEESSTTCCS----CCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEEE
T ss_pred             EccCCceeEeeecCCcccc----cccCCCCcEEEeeccCCcEEEEEEEECCCCeEEEEECCCCCEecccccccccccccc
Confidence            9999999887754321100    000011111112222554   78889999999999999998763221100       


Q ss_pred             ---------------------c-----------ceEEEEEcCCCCcEEEEEeC---------------------------
Q 021247          201 ---------------------M-----------PVRSLVYSPVDPRVLFSASD---------------------------  221 (315)
Q Consensus       201 ---------------------~-----------~v~~~~~~~~~~~~l~s~~~---------------------------  221 (315)
                                           .           .-..++|+|..+ +++....                           
T Consensus       357 ~~~~~~pi~~~~~~~~~~~~~~~~~~p~~~Gg~~w~~~a~dp~~~-~~yv~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~  435 (689)
T 1yiq_A          357 DMKTGRPILDEENAAYWKNGKRNLVTPAFWGAHDWQPMSYNPDTG-LVYIPAHIMSAYYEHIPEAPKRNPFKSMYQLGLR  435 (689)
T ss_dssp             ETTTTEEEECHHHHCTTTSSSCEEESSCTTCSSCSSCCEEETTTT-EEEEEEEECCEEEECCSSCCCCCSCTTSCCCSSE
T ss_pred             CccCCCcccchhhccccCCCCeeEeCCCcccccCCCcceECCCCC-EEEEeccccceeeeeccccccccccccccccCcc
Confidence                                 0           001256777433 4443311                           


Q ss_pred             ------------------CCeEEEEeCCCCeeEEEeecccccEEEEEEcCCCCeEEEEeCCCcEEEEecCccceehcccc
Q 021247          222 ------------------DTHVHMYDAEGKSLVTAMSGHASWVLSVDASPDGAAITTGSSDRTVKLWDLNMRAAMQSMTN  283 (315)
Q Consensus       222 ------------------d~~i~~wd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~  283 (315)
                                        ++.|..||+++++.+-....+.. ...-.+...+.+++.|+.|+.++.||.++++.+-++..
T Consensus       436 ~~~~p~~~~~~~~~~~~~~g~l~A~D~~tG~~~W~~~~~~~-~~~g~~~tagglvf~gt~dg~l~a~D~~tG~~lw~~~~  514 (689)
T 1yiq_A          436 TGMMPEGAEGLLEMAKSWSGKLIAWDPVKQQAAWEVPYVTI-FNGGTLSTAGNLVFEGSADGRVIAYAADTGEKLWEQPA  514 (689)
T ss_dssp             ECCCCSSHHHHHHHHTTCEEEEEEEETTTTEEEEEEEESSS-CCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEEC
T ss_pred             ccccCcccccCCCCCCCcceeEEEEECCCCCeEeEccCCCC-ccCccceECCCEEEEECCCCcEEEEECCCCccceeeeC
Confidence                              37899999999987766554432 22234555677899999999999999999998766544


Q ss_pred             ccc-ceEEEEEeeCCCEEE
Q 021247          284 HTD-QVWGVSFRPLGGRVV  301 (315)
Q Consensus       284 ~~~-~v~~~~~s~~~~~l~  301 (315)
                      ..+ ...-+.|..+|+..+
T Consensus       515 ~~~~~~~p~ty~~~G~qyv  533 (689)
T 1yiq_A          515 ASGVMAAPVTYSVDGEQYV  533 (689)
T ss_dssp             SSCCCSCCEEEEETTEEEE
T ss_pred             CCCcccCceEEEECCEEEE
Confidence            322 223467888887544

>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1

Probab=99.34  E-value=4.7e-11  Score=100.26  Aligned_cols=250  Identities=11%  Similarity=0.013  Sum_probs=158.3

Q ss_pred             EEEEeecCCCCCcEEEEee----------CCCcEEEEcCCCCcceeecccc-------ccceEEEEeCCCCCEEEEeeC-
Q 021247           19 AVTWVPATETRPALLLTGS----------LDETVKLWRPDDMQLERTNTGH-------CLGVVSVAAHPSGIIAASASL-   80 (315)
Q Consensus        19 ~v~~~~~~~~~~~~l~sgs----------~d~~v~~w~~~~~~~~~~~~~h-------~~~v~~~~~~~~g~~l~s~~~-   80 (315)
                      ++.++|++..    ++.+.          .++.|.+||..+.+....+.-.       ......+.++|+|++++.+.. 
T Consensus        69 ~i~~spDg~~----lyVan~~~~r~~~G~~~~~VsviD~~T~~vv~~I~v~~~~~~~~g~~P~~ia~SpDGk~lyVan~~  144 (368)
T 1mda_H           69 LAVAGHSGSD----FALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDAPRFSVGPRVHIIGNCASSACLLFFLFG  144 (368)
T ss_dssp             EEEECTTSSC----EEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEETTSCSCCBSCCTTSEEECTTSSCEEEEECS
T ss_pred             ceEECCCCCE----EEEEcccccccccCCCCCEEEEEECCCCCEEEEEECCCccccccCCCcceEEEcCCCCEEEEEccC
Confidence            7899998763    55554          4789999999999887776422       123567899999998887754 


Q ss_pred             -CCeEEE--EECCCCceeEEeeCCcccEEEEEECCCCCeEEEEecCCCeEEEEecCC-----cceeeeecCCCCCCCCCC
Q 021247           81 -DSFVRV--FDVDTNASIATLEASPSEVWQMQFDPKGTTLAVAGGGSASVKLWDTAT-----WNLIATLSIPRPEGLKPT  152 (315)
Q Consensus        81 -d~~i~~--w~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~~d~~~-----~~~~~~~~~~~~~~~~~~  152 (315)
                       +..+.+  +|..+   +..+.....    ....|+++..+++.+.|+.+.+.|+.+     ++......   .  ..  
T Consensus       145 ~~~~v~V~~iD~~t---v~~i~v~~~----~~~~p~g~~~~~~~~~dg~~~~vd~~~~~~~~~~v~~~~t---~--~i--  210 (368)
T 1mda_H          145 SSAAAGLSVPGASD---DQLTKSASC----FHIHPGAAATHYLGSCPASLAASDLAAAPAAAGIVGAQCT---G--AQ--  210 (368)
T ss_dssp             SSCEEEEEETTTEE---EEEEECSSC----CCCEEEETTEEECCCCTTSCEEEECCSSCCCCEECCCCSC---T--TS--
T ss_pred             CCCeEEEEEEchhh---ceEEECCCc----eEEccCCCeEEEEEcCCCCEEEEECccccccCCeEEEEee---e--ee--
Confidence             467888  88876   444432211    123455555556667788888888875     33221100   0  00  


Q ss_pred             ccCCCCcceEEEEECCCCCEEEEecCCCcEEEEEcccc--eeeeeecCC----------ccceEEEEEcCCCCcEEEEEe
Q 021247          153 DKSSSKKFVLSVAWSPDGRRIACGSMDGTISVFDVTRA--KFLHHLEGH----------FMPVRSLVYSPVDPRVLFSAS  220 (315)
Q Consensus       153 ~~~~~~~~i~~~~~~~~~~~l~~~s~dg~i~i~d~~~~--~~~~~~~~~----------~~~v~~~~~~~~~~~~l~s~~  220 (315)
                        .....+.   . .+++..++..+. +.+.+.|+...  +.+..+...          ......+.++|++.+++++..
T Consensus       211 --~vg~~P~---~-~~~~~~~~~vs~-~~V~viD~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~v~~s~dg~~lyV~~~  283 (368)
T 1mda_H          211 --NCSSQAA---Q-ANYPGMLVWAVA-SSILQGDIPAAGATMKAAIDGNESGRKADNFRSAGFQMVAKLKNTDGIMILTV  283 (368)
T ss_dssp             --CBCSCCE---E-ETTTTEEEECBS-SCCEEEECCSSCCEEECCCCSSCTHHHHTTEEECSSSCEEEETTTTEEEEEEE
T ss_pred             --eCCCCcc---c-cccCCEEEEEcC-CEEEEEECCCCcceEEEEEEeccccccccccccCcceeeEEcCCCCEEEEEec
Confidence              0011122   3 455555555555 89999998643  222222110          011112678886666555544


Q ss_pred             ---C-----CCeEEEEeCCCCeeEEEeecccccEEEEEEcCCCC-eEEEEe-CCCcEEEEecCccceehcccccccceEE
Q 021247          221 ---D-----DTHVHMYDAEGKSLVTAMSGHASWVLSVDASPDGA-AITTGS-SDRTVKLWDLNMRAAMQSMTNHTDQVWG  290 (315)
Q Consensus       221 ---~-----d~~i~~wd~~~~~~~~~~~~~~~~i~~~~~~~~~~-~l~s~~-~d~~i~iwd~~~~~~~~~~~~~~~~v~~  290 (315)
                         .     +..+.++|..+.+.+..+.... ....++++|+++ .+++.. .++.|.++|+.+++.++++... +..+.
T Consensus       284 ~~~~~~~~~~~~~~ViD~~t~~vv~~i~vg~-~p~gi~~s~Dg~~l~va~~~~~~~VsVID~~t~kvv~~I~vg-~~P~~  361 (368)
T 1mda_H          284 EHSRSCLAAAENTSSVTASVGQTSGPISNGH-DSDAIIAAQDGASDNYANSAGTEVLDIYDAASDQDQSSVELD-KGPES  361 (368)
T ss_dssp             ECSSCTTSCEEEEEEEESSSCCEEECCEEEE-EECEEEECCSSSCEEEEEETTTTEEEEEESSSCEEEEECCCC-SCCCE
T ss_pred             cccCcccccCCCEEEEECCCCeEEEEEECCC-CcceEEECCCCCEEEEEccCCCCeEEEEECCCCcEEEEEECC-CCCCE
Confidence               2     2356699999998887765433 578899999997 566666 5999999999999998888654 34556


Q ss_pred             EEEee
Q 021247          291 VSFRP  295 (315)
Q Consensus       291 ~~~s~  295 (315)
                      +++.+
T Consensus       362 i~~~~  366 (368)
T 1mda_H          362 LSVQN  366 (368)
T ss_dssp             EECCC
T ss_pred             EEeec
Confidence            66654

>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A

Probab=99.32  E-value=4.3e-09  Score=89.20  Aligned_cols=264  Identities=10%  Similarity=0.025  Sum_probs=159.7

Q ss_pred             cEEEEeeCCCcEEEEcCCCCcceeecccc---------ccceEEEEeCCCCCEEEEeeCCCeEEEEECCCCceeEEeeCC
Q 021247           31 ALLLTGSLDETVKLWRPDDMQLERTNTGH---------CLGVVSVAAHPSGIIAASASLDSFVRVFDVDTNASIATLEAS  101 (315)
Q Consensus        31 ~~l~sgs~d~~v~~w~~~~~~~~~~~~~h---------~~~v~~~~~~~~g~~l~s~~~d~~i~~w~~~~~~~~~~~~~~  101 (315)
                      ..++.++.++.|..+|.++++........         ...+..... .++..++.++.++.|..+|..+++.+......
T Consensus        54 ~~v~~~~~~g~v~a~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~v~~~~g~l~a~d~~tG~~~W~~~~~  132 (376)
T 3q7m_A           54 NVVYAADRAGLVKALNADDGKEIWSVSLAEKDGWFSKEPALLSGGVT-VSGGHVYIGSEKAQVYALNTSDGTVAWQTKVA  132 (376)
T ss_dssp             TEEEEECTTSEEEEEETTTCCEEEEEECCC---CCSCCCCCEEEEEE-EETTEEEEEETTSEEEEEETTTCCEEEEEECS
T ss_pred             CEEEEEcCCCeEEEEEccCCceeeeecCccccccccccCcccccCce-EeCCEEEEEcCCCEEEEEECCCCCEEEEEeCC
Confidence            46888888999999999888776443321         112222211 23456667888999999999999887766543


Q ss_pred             cccEEEEEECCCCCeEEEEecCCCeEEEEecCCcceeeeecCCCCCCCCCCccCCCCcceEEEEECCCCCEEEEecCCCc
Q 021247          102 PSEVWQMQFDPKGTTLAVAGGGSASVKLWDTATWNLIATLSIPRPEGLKPTDKSSSKKFVLSVAWSPDGRRIACGSMDGT  181 (315)
Q Consensus       102 ~~~v~~~~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~s~dg~  181 (315)
                      ..........  +.. ++.+..++.+..+|.++++.+.......+...    .....    ....  .+..++.++.++.
T Consensus       133 ~~~~~~p~~~--~~~-v~v~~~~g~l~~~d~~tG~~~W~~~~~~~~~~----~~~~~----~~~~--~~~~v~~g~~~g~  199 (376)
T 3q7m_A          133 GEALSRPVVS--DGL-VLIHTSNGQLQALNEADGAVKWTVNLDMPSLS----LRGES----APTT--AFGAAVVGGDNGR  199 (376)
T ss_dssp             SCCCSCCEEE--TTE-EEEECTTSEEEEEETTTCCEEEEEECCC---------CCCC----CCEE--ETTEEEECCTTTE
T ss_pred             CceEcCCEEE--CCE-EEEEcCCCeEEEEECCCCcEEEEEeCCCCcee----ecCCC----CcEE--ECCEEEEEcCCCE
Confidence            2211111111  233 34567789999999999998877754322100    00000    1111  1456778888999


Q ss_pred             EEEEEcccceeeeeecCCccc----eE---EEEEcCC-CCcEEEEEeCCCeEEEEeCCCCeeEEEeecccccEEEEEEcC
Q 021247          182 ISVFDVTRAKFLHHLEGHFMP----VR---SLVYSPV-DPRVLFSASDDTHVHMYDAEGKSLVTAMSGHASWVLSVDASP  253 (315)
Q Consensus       182 i~i~d~~~~~~~~~~~~~~~~----v~---~~~~~~~-~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~i~~~~~~~  253 (315)
                      +..+|..+++.+-........    +.   .+.-.|. .+..++.++.++.+..+|.++++.+-....  .....+..  
T Consensus       200 l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~p~~~~~~v~~~~~~g~l~~~d~~tG~~~w~~~~--~~~~~~~~--  275 (376)
T 3q7m_A          200 VSAVLMEQGQMIWQQRISQATGSTEIDRLSDVDTTPVVVNGVVFALAYNGNLTALDLRSGQIMWKREL--GSVNDFIV--  275 (376)
T ss_dssp             EEEEETTTCCEEEEEECCC-----------CCCCCCEEETTEEEEECTTSCEEEEETTTCCEEEEECC--CCEEEEEE--
T ss_pred             EEEEECCCCcEEEEEecccCCCCcccccccccCCCcEEECCEEEEEecCcEEEEEECCCCcEEeeccC--CCCCCceE--
Confidence            999999988876544321100    00   0001110 234677777889999999988876644332  22334433  


Q ss_pred             CCCeEEEEeCCCcEEEEecCccceehccc-ccccceEEEEEeeCCCEEEEEeCCCcEEEeec
Q 021247          254 DGAAITTGSSDRTVKLWDLNMRAAMQSMT-NHTDQVWGVSFRPLGGRVVSVSDDKSISLYEY  314 (315)
Q Consensus       254 ~~~~l~s~~~d~~i~iwd~~~~~~~~~~~-~~~~~v~~~~~s~~~~~l~s~~~d~~i~i~~~  314 (315)
                      ++..+..++.++.+..+|..+++.+-... .....+.+...  .+..|+.++.+|.+.++|.
T Consensus       276 ~~~~l~~~~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~--~~~~l~v~~~~g~l~~~d~  335 (376)
T 3q7m_A          276 DGNRIYLVDQNDRVMALTIDGGVTLWTQSDLLHRLLTSPVL--YNGNLVVGDSEGYLHWINV  335 (376)
T ss_dssp             ETTEEEEEETTCCEEEEETTTCCEEEEECTTTTSCCCCCEE--ETTEEEEECTTSEEEEEET
T ss_pred             ECCEEEEEcCCCeEEEEECCCCcEEEeecccCCCcccCCEE--ECCEEEEEeCCCeEEEEEC
Confidence            35577888889999999999887653332 11122222222  2568888888999988874

>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}

Probab=99.30  E-value=1.3e-12  Score=110.57  Aligned_cols=204  Identities=14%  Similarity=0.107  Sum_probs=110.4

Q ss_pred             CCCEEEEeeCCCeEEEEECCCCceeEEeeCCcccEEEEEECCCCCeEEEEecCCCeEEEEecCCcceeeeecCCCCCCCC
Q 021247           71 SGIIAASASLDSFVRVFDVDTNASIATLEASPSEVWQMQFDPKGTTLAVAGGGSASVKLWDTATWNLIATLSIPRPEGLK  150 (315)
Q Consensus        71 ~g~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~  150 (315)
                      ++..+++++.|+.|+.||..+++.+..+..  .++.+..+.+++. ++++++.|+.|..||..+++.+..+..+.+..  
T Consensus         8 ~~~~v~~gs~dg~v~a~d~~tG~~~W~~~~--~~~~s~p~~~~g~-~~v~~s~dg~l~a~d~~tG~~~w~~~~~~~~~--   82 (369)
T 2hz6_A            8 PETLLFVSTLDGSLHAVSKRTGSIKWTLKE--DPVLQVPTHVEEP-AFLPDPNDGSLYTLGSKNNEGLTKLPFTIPEL--   82 (369)
T ss_dssp             CTTEEEEEETTSEEEEEETTTCCEEEEEEC--CCSCCCC-----C-CEEECTTTCCEEEC-----CCSEECSCCHHHH--
T ss_pred             eCCEEEEEcCCCEEEEEECCCCCEEEEecC--CCceecceEcCCC-EEEEeCCCCEEEEEECCCCceeeeeeccCccc--
Confidence            567888899999999999999998887765  3343333444554 44566789999999998887766553221100  


Q ss_pred             CCccCCCCcceEEEEECCCCCEEEEecCCCcEEEEEcccceeeeeecCCccceEEEEEcCCCCcEEEEEeCCCeEEEEeC
Q 021247          151 PTDKSSSKKFVLSVAWSPDGRRIACGSMDGTISVFDVTRAKFLHHLEGHFMPVRSLVYSPVDPRVLFSASDDTHVHMYDA  230 (315)
Q Consensus       151 ~~~~~~~~~~i~~~~~~~~~~~l~~~s~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~  230 (315)
                          . ...++    + ..+..+++++.++.++.||..+++.+..+..+.    ...++| .+..+++++.|+.|+.||.
T Consensus        83 ----~-~~sp~----~-~~~~~v~~g~~dg~v~a~D~~tG~~~w~~~~~~----~~~~~p-~~~~v~~~~~dg~v~a~d~  147 (369)
T 2hz6_A           83 ----V-QASPC----R-SSDGILYMGKKQDIWYVIDLLTGEKQQTLSSAF----ADSLSP-STSLLYLGRTEYTITMYDT  147 (369)
T ss_dssp             ----H-TTCSC----C------CCCCEEEEEEEEECCC---------------------------EEEEEEEEEEECCCS
T ss_pred             ----c-ccCce----E-ecCCEEEEEeCCCEEEEEECCCCcEEEEecCCC----cccccc-cCCEEEEEecCCEEEEEEC
Confidence                0 00000    1 134567788889999999999998876665443    134456 5667888899999999999


Q ss_pred             CCCeeEEEeecccccEEEEEEcCCC---CeEEEEeCCCcEEEEecCccceehcccccccceEE-EEEeeCC
Q 021247          231 EGKSLVTAMSGHASWVLSVDASPDG---AAITTGSSDRTVKLWDLNMRAAMQSMTNHTDQVWG-VSFRPLG  297 (315)
Q Consensus       231 ~~~~~~~~~~~~~~~i~~~~~~~~~---~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~-~~~s~~~  297 (315)
                      ++++.+-....+.  .....++++.   ..+++++.||.|+.||.++++.+-.... ..++.. ..++++|
T Consensus       148 ~tG~~~W~~~~~~--~~~~~~~~~~~~~~~v~~~~~dg~v~a~d~~tG~~~W~~~~-~~pv~~~~~~~~dg  215 (369)
T 2hz6_A          148 KTRELRWNATYFD--YAASLPEDDVDYKMSHFVSNGDGLVVTVDSESGDVLWIQNY-ASPVVAFYVWQREG  215 (369)
T ss_dssp             SSSSCCCEEEEEE--ECCBCCCCCTTCCCCEEEEETSCEEEEECTTTCCEEEEEEC-SSCEEEEEECTTSS
T ss_pred             CCCCEEEeEeccc--ccCccccCCccccceEEEECCCCEEEEEECCCCcEEEEecC-CCceEEEEEecCCc
Confidence            8876543332111  1122233321   4577789999999999998876544432 234332 3444454

>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*

Probab=99.29  E-value=3e-09  Score=84.73  Aligned_cols=195  Identities=12%  Similarity=0.029  Sum_probs=141.6

Q ss_pred             ceEEEEeCCCCCEEEEeeC--CCeEEEEECCCCceeEEeeCCcc-cEEEEEECCCCCeEEEEecCCCeEEEEecCCccee
Q 021247           62 GVVSVAAHPSGIIAASASL--DSFVRVFDVDTNASIATLEASPS-EVWQMQFDPKGTTLAVAGGGSASVKLWDTATWNLI  138 (315)
Q Consensus        62 ~v~~~~~~~~g~~l~s~~~--d~~i~~w~~~~~~~~~~~~~~~~-~v~~~~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~  138 (315)
                      ....+.+++++.++++.+.  ++.|+++|+.+++.+..+..... ....+++.  +..++++...++.+.++|..+.+.+
T Consensus        22 f~~Gl~~~~dg~Lyvstg~~~~s~v~~iD~~tg~v~~~i~l~~~~fgeGi~~~--g~~lyv~t~~~~~v~viD~~t~~v~   99 (266)
T 2iwa_A           22 FTQGLVYAENDTLFESTGLYGRSSVRQVALQTGKVENIHKMDDSYFGEGLTLL--NEKLYQVVWLKNIGFIYDRRTLSNI   99 (266)
T ss_dssp             CEEEEEECSTTEEEEEECSTTTCEEEEEETTTCCEEEEEECCTTCCEEEEEEE--TTEEEEEETTCSEEEEEETTTTEEE
T ss_pred             CcccEEEeCCCeEEEECCCCCCCEEEEEECCCCCEEEEEecCCCcceEEEEEe--CCEEEEEEecCCEEEEEECCCCcEE
Confidence            3578889998877776654  68999999999998887764332 23345554  5567777788999999999999998


Q ss_pred             eeecCCCCCCCCCCccCCCCcceEEEEECCCCCEEEEecCCCcEEEEEcccceeeeeecCCc--c---ceEEEEEcCCCC
Q 021247          139 ATLSIPRPEGLKPTDKSSSKKFVLSVAWSPDGRRIACGSMDGTISVFDVTRAKFLHHLEGHF--M---PVRSLVYSPVDP  213 (315)
Q Consensus       139 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~s~dg~i~i~d~~~~~~~~~~~~~~--~---~v~~~~~~~~~~  213 (315)
                      .++....++               ...++++|+.++++..++.|.++|..+.+....+.-..  .   ..+.+.|.  ++
T Consensus       100 ~~i~~g~~~---------------g~glt~Dg~~l~vs~gs~~l~viD~~t~~v~~~I~Vg~~~~p~~~~nele~~--dg  162 (266)
T 2iwa_A          100 KNFTHQMKD---------------GWGLATDGKILYGSDGTSILYEIDPHTFKLIKKHNVKYNGHRVIRLNELEYI--NG  162 (266)
T ss_dssp             EEEECCSSS---------------CCEEEECSSSEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE--TT
T ss_pred             EEEECCCCC---------------eEEEEECCCEEEEECCCCeEEEEECCCCcEEEEEEECCCCcccccceeEEEE--CC
Confidence            887643111               12244577777766678899999999988777665321  1   25677776  45


Q ss_pred             cEEEEEeCCCeEEEEeCCCCeeEEEeecc-------------cccEEEEEEcCCCC-eEEEEeCCCcEEEEecCcc
Q 021247          214 RVLFSASDDTHVHMYDAEGKSLVTAMSGH-------------ASWVLSVDASPDGA-AITTGSSDRTVKLWDLNMR  275 (315)
Q Consensus       214 ~~l~s~~~d~~i~~wd~~~~~~~~~~~~~-------------~~~i~~~~~~~~~~-~l~s~~~d~~i~iwd~~~~  275 (315)
                      ++++....++.|.+.|.++++.+..+.-.             ....+.++++|+++ +++++...+++.+.++...
T Consensus       163 ~lyvn~~~~~~V~vID~~tg~V~~~I~~~g~~~~~~~~~~~~~~v~nGIa~~~~~~~lfVTgk~~~~v~~i~l~~~  238 (266)
T 2iwa_A          163 EVWANIWQTDCIARISAKDGTLLGWILLPNLRKKLIDEGFRDIDVLNGIAWDQENKRIFVTGKLWPKLFEIKLHLV  238 (266)
T ss_dssp             EEEEEETTSSEEEEEETTTCCEEEEEECHHHHHHHHHTTCTTCCCEEEEEEETTTTEEEEEETTCSEEEEEEEEEC
T ss_pred             EEEEecCCCCeEEEEECCCCcEEEEEECCCcccccccccccccCceEEEEEcCCCCEEEEECCCCCeEEEEEEecc
Confidence            66666667889999999999988877521             13568999999875 5677778888988888654

>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A

Probab=99.29  E-value=3.5e-10  Score=99.08  Aligned_cols=220  Identities=13%  Similarity=0.119  Sum_probs=146.2

Q ss_pred             CCCCEEEEe-eCCCeEEEEECCCCceeEEeeCC-cccEEEEEE-C-CCCCeEEEEe-----------------cCCCeEE
Q 021247           70 PSGIIAASA-SLDSFVRVFDVDTNASIATLEAS-PSEVWQMQF-D-PKGTTLAVAG-----------------GGSASVK  128 (315)
Q Consensus        70 ~~g~~l~s~-~~d~~i~~w~~~~~~~~~~~~~~-~~~v~~~~~-~-~~~~~~~~~~-----------------~~d~~i~  128 (315)
                      +||+++... ..+..|.+.|+.+.++...+... ......+++ . |+++++++++                 ..++.+.
T Consensus        99 ~DG~~lfVnd~~~~rVavIdl~t~~~~~ii~ip~g~~phg~~~~~~p~~~~v~~~~~~~~p~~~dg~~l~~~~~~~~~vt  178 (595)
T 1fwx_A           99 YDGRFLFMNDKANTRVARVRCDVMKCDAILEIPNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANYVNVFT  178 (595)
T ss_dssp             EEEEEEEEEETTTTEEEEEETTTTEEEEEEECSSCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGGGEEEEEE
T ss_pred             cCCCEEEEEcCCCCEEEEEECCCceEeeEEeCCCCCCCcceeeeecCCCcEEEEecccccccCCCCcccccccccCceEE
Confidence            477766654 44567999999999887755432 234667787 5 8999887764                 3356899


Q ss_pred             EEecCCcceeeeecCCCCCCCCCCccCCCCcceEEEEECCCCCEEEEecCCC----------------------------
Q 021247          129 LWDTATWNLIATLSIPRPEGLKPTDKSSSKKFVLSVAWSPDGRRIACGSMDG----------------------------  180 (315)
Q Consensus       129 ~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~s~dg----------------------------  180 (315)
                      ++|..+++....+.....              ...++++|+|+++++.+.+.                            
T Consensus       179 vID~~t~~v~~qI~Vgg~--------------pd~~~~spdGk~~~vt~~~se~~~~i~~~~~~~~d~v~V~~~~~~~~~  244 (595)
T 1fwx_A          179 AVDADKWEVAWQVLVSGN--------------LDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKA  244 (595)
T ss_dssp             EEETTTTEEEEEEEESSC--------------CCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHH
T ss_pred             EEECCCCeEEEEEEeCCC--------------ccceEECCCCCEEEEEecCcccCcchhhccccccceEEEeeccceeEe
Confidence            999999888887765321              12467788888887766442                            


Q ss_pred             ----------cEEEEEccc--cee-eeeecCCccceEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCe------------e
Q 021247          181 ----------TISVFDVTR--AKF-LHHLEGHFMPVRSLVYSPVDPRVLFSASDDTHVHMYDAEGKS------------L  235 (315)
Q Consensus       181 ----------~i~i~d~~~--~~~-~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~------------~  235 (315)
                                .|.+.|.++  ++. +..+... ....++.++|++..+++++..+.+|.++|..+.+            .
T Consensus       245 v~~Gk~~~i~~V~VID~~~~~~~~~~~~Ipvg-~~PhGv~~sPDGk~v~V~~~~s~~VsVid~~~~~~~~~~~l~~~~~v  323 (595)
T 1fwx_A          245 IAAGDYQELNGVKVVDGRKEASSLFTRYIPIA-NNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAV  323 (595)
T ss_dssp             HHHTCSEEETTEEEEECSGGGCCSSEEEEEEE-SSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCCCGGGGE
T ss_pred             ccCCCeeEECcEEEEeCcccCCceeEEEEecC-CCceEEEEcCCCCEEEEeCCCCCeEEEEECcccccccccccCcccce
Confidence                      356666655  332 2223211 1345788999666666777788999999988542            2


Q ss_pred             EEEeecccccEEEEEEcCCCCeEEEEeCCCcEEEEecCc----------cceehcccccccce-----EEEEEeeCCCEE
Q 021247          236 VTAMSGHASWVLSVDASPDGAAITTGSSDRTVKLWDLNM----------RAAMQSMTNHTDQV-----WGVSFRPLGGRV  300 (315)
Q Consensus       236 ~~~~~~~~~~i~~~~~~~~~~~l~s~~~d~~i~iwd~~~----------~~~~~~~~~~~~~v-----~~~~~s~~~~~l  300 (315)
                      ..... -......++|+|+|...++.-.|+.|.+||++.          ...+..+.-|..+-     .++.++|||++|
T Consensus       324 ~~~v~-vG~gP~h~aF~~dG~aY~t~~ldsqV~kwdi~~a~~~~~g~~~~~vi~kidV~yqpGh~~~~~g~t~~~DGk~l  402 (595)
T 1fwx_A          324 VAEPE-LGLGPLHTAFDGRGNAYTSLFLDSQVVKWNIEDAIRAYAGEKVDPIKDKLDVHYQPGHLKTVMGETLDATNDWL  402 (595)
T ss_dssp             EECCB-CCSCEEEEEECTTSEEEEEETTTTEEEEEEHHHHHHHHHTCSCCCEEEEEECSSCEEEEEETTTTSTTCCSSEE
T ss_pred             EEEcC-CCCCcceEEECCCCeEEEEEecCCcEEEEEhhHhhhhhcccccceeEEEeecccccccceeccceEeCCCCCEE
Confidence            33332 234578999999995556778899999999976          23344444443321     223568999999


Q ss_pred             EEEeC
Q 021247          301 VSVSD  305 (315)
Q Consensus       301 ~s~~~  305 (315)
                      ++...
T Consensus       403 ~~~Nk  407 (595)
T 1fwx_A          403 VCLSK  407 (595)
T ss_dssp             EEEES
T ss_pred             EEcCC
Confidence            87654

>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}

Probab=99.26  E-value=1.8e-10  Score=95.74  Aligned_cols=251  Identities=12%  Similarity=0.002  Sum_probs=149.2

Q ss_pred             cEEEEeeCCCcEEEEcCCCCcceeeccccccceEEEEeCCCCCEEEEeeCCCeEEEEECCCCceeEEeeCCcccEEEEEE
Q 021247           31 ALLLTGSLDETVKLWRPDDMQLERTNTGHCLGVVSVAAHPSGIIAASASLDSFVRVFDVDTNASIATLEASPSEVWQMQF  110 (315)
Q Consensus        31 ~~l~sgs~d~~v~~w~~~~~~~~~~~~~h~~~v~~~~~~~~g~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~v~~~~~  110 (315)
                      ..+..++.++.|..|| .+.+.......+...+.++...++|.+.+ ++.+  +..+|. +++.+..+...........+
T Consensus        31 g~l~v~t~~~~l~~~d-~~g~~~~~~~~~~~~~~~~~~~~~g~l~v-~t~~--l~~~d~-~g~~~~~~~~~~~~~~~~~~  105 (330)
T 3hxj_A           31 GTIYLGSSNKNLYAIN-TDGSVKWFFKSGEIIECRPSIGKDGTIYF-GSDK--VYAINP-DGTEKWRFDTKKAIVSDFTI  105 (330)
T ss_dssp             SCEECSSTTTTTEEEC-TTSCEEESSCGGGEEEECCEETTTTEECC-SSCE--EEEECC-CGGGGGGSCC-----CCEEE
T ss_pred             CeEEEEcCCCEEEEEC-CCCcEEEEEecCCCcccceEEecCCcEEE-ecCc--EEEECC-CCcEEEEEECCCCcccCceE
Confidence            3588888899999999 67766555444445567777777776555 4333  888886 44433322222211112222


Q ss_pred             CCCCCeEEEEecCCCeEEEEecCCcceeeeecCCCCCCCCCCccCCCCcceEEEEECCCCCEEEEecCCCcEEEEEcccc
Q 021247          111 DPKGTTLAVAGGGSASVKLWDTATWNLIATLSIPRPEGLKPTDKSSSKKFVLSVAWSPDGRRIACGSMDGTISVFDVTRA  190 (315)
Q Consensus       111 ~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~s~dg~i~i~d~~~~  190 (315)
                      .  +..+ ..+..++.+..+|.. ++.......+..             .+.++...+++. +..++.++.+..+|.. +
T Consensus       106 ~--~~~l-~v~t~~~~l~~~d~~-g~~~~~~~~~~~-------------~~~~~~~~~~g~-l~vgt~~~~l~~~d~~-g  166 (330)
T 3hxj_A          106 F--EDIL-YVTSMDGHLYAINTD-GTEKWRFKTKKA-------------IYATPIVSEDGT-IYVGSNDNYLYAINPD-G  166 (330)
T ss_dssp             E--TTEE-EEECTTSEEEEECTT-SCEEEEEECSSC-------------CCSCCEECTTSC-EEEECTTSEEEEECTT-S
T ss_pred             E--CCEE-EEEecCCEEEEEcCC-CCEEEEEcCCCc-------------eeeeeEEcCCCE-EEEEcCCCEEEEECCC-C
Confidence            2  3334 446678899999988 666555433211             133455566665 6667788999999988 6


Q ss_pred             eeeeeecCCccceEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCeeEEEeecccccEEEEEEcCCCCeEEEEeCCCcEEEE
Q 021247          191 KFLHHLEGHFMPVRSLVYSPVDPRVLFSASDDTHVHMYDAEGKSLVTAMSGHASWVLSVDASPDGAAITTGSSDRTVKLW  270 (315)
Q Consensus       191 ~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~d~~i~iw  270 (315)
                      +...........+.++...+ ++.+++ ++  +.|..+| .+++.+.........+.++..++++. |..++.++.+..+
T Consensus       167 ~~~~~~~~~~~~~~~~~~d~-~g~l~v-~t--~~l~~~d-~~g~~~~~~~~~~~~~~~~~~~~~g~-l~v~t~~~gl~~~  240 (330)
T 3hxj_A          167 TEKWRFKTNDAITSAASIGK-DGTIYF-GS--DKVYAIN-PDGTEKWNFYAGYWTVTRPAISEDGT-IYVTSLDGHLYAI  240 (330)
T ss_dssp             CEEEEEECSSCCCSCCEECT-TCCEEE-ES--SSEEEEC-TTSCEEEEECCSSCCCSCCEECTTSC-EEEEETTTEEEEE
T ss_pred             CEeEEEecCCCceeeeEEcC-CCEEEE-Ee--CEEEEEC-CCCcEEEEEccCCcceeceEECCCCe-EEEEcCCCeEEEE
Confidence            66555544444555555554 444444 44  7899999 55555544444445577778888775 5556777888888


Q ss_pred             ecCccceehcccccccceEEEEEeeCCCEEEEEeCCCcEEEee
Q 021247          271 DLNMRAAMQSMTNHTDQVWGVSFRPLGGRVVSVSDDKSISLYE  313 (315)
Q Consensus       271 d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~i~i~~  313 (315)
                      +.. ++.+..+......+.++.+.+++ .|..++.+|.|..+|
T Consensus       241 ~~~-g~~~~~~~~~~~~~~~~~~~~~g-~l~v~t~~ggl~~~d  281 (330)
T 3hxj_A          241 NPD-GTEKWRFKTGKRIESSPVIGNTD-TIYFGSYDGHLYAIN  281 (330)
T ss_dssp             CTT-SCEEEEEECSSCCCSCCEECTTS-CEEEECTTCEEEEEC
T ss_pred             CCC-CCEeEEeeCCCCccccceEcCCC-eEEEecCCCCEEEEC
Confidence            753 44333333333333344454444 566667777777665

>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*

Probab=99.25  E-value=1.8e-08  Score=80.21  Aligned_cols=202  Identities=8%  Similarity=0.002  Sum_probs=136.8

Q ss_pred             eeEEeeCCcc-cEEEEEECCCCCeEEEEecC--CCeEEEEecCCcceeeeecCCCCCCCCCCccCCCCcceEEEEECCCC
Q 021247           94 SIATLEASPS-EVWQMQFDPKGTTLAVAGGG--SASVKLWDTATWNLIATLSIPRPEGLKPTDKSSSKKFVLSVAWSPDG  170 (315)
Q Consensus        94 ~~~~~~~~~~-~v~~~~~~~~~~~~~~~~~~--d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~  170 (315)
                      .+.++..... ....+.|+|++ .++++.+.  ++.|.++|+.+++.+..+.++..            .+...+++.  +
T Consensus        11 vv~~~p~~~~~f~~Gl~~~~dg-~Lyvstg~~~~s~v~~iD~~tg~v~~~i~l~~~------------~fgeGi~~~--g   75 (266)
T 2iwa_A           11 VLNEFPHDPYAFTQGLVYAEND-TLFESTGLYGRSSVRQVALQTGKVENIHKMDDS------------YFGEGLTLL--N   75 (266)
T ss_dssp             EEEEEECCTTCCEEEEEECSTT-EEEEEECSTTTCEEEEEETTTCCEEEEEECCTT------------CCEEEEEEE--T
T ss_pred             EEEEEECCCCCCcccEEEeCCC-eEEEECCCCCCCEEEEEECCCCCEEEEEecCCC------------cceEEEEEe--C
Confidence            3455554332 36789999985 56665543  68999999999999888765321            112345554  4


Q ss_pred             CEE-EEecCCCcEEEEEcccceeeeeecCCccceEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCeeEEEeeccc-----c
Q 021247          171 RRI-ACGSMDGTISVFDVTRAKFLHHLEGHFMPVRSLVYSPVDPRVLFSASDDTHVHMYDAEGKSLVTAMSGHA-----S  244 (315)
Q Consensus       171 ~~l-~~~s~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~-----~  244 (315)
                      +.| ++.-.++.+.++|..+.+.+..+......-  ..+++++.+++++ ..++.|.++|.++.+.+..+.-..     .
T Consensus        76 ~~lyv~t~~~~~v~viD~~t~~v~~~i~~g~~~g--~glt~Dg~~l~vs-~gs~~l~viD~~t~~v~~~I~Vg~~~~p~~  152 (266)
T 2iwa_A           76 EKLYQVVWLKNIGFIYDRRTLSNIKNFTHQMKDG--WGLATDGKILYGS-DGTSILYEIDPHTFKLIKKHNVKYNGHRVI  152 (266)
T ss_dssp             TEEEEEETTCSEEEEEETTTTEEEEEEECCSSSC--CEEEECSSSEEEE-CSSSEEEEECTTTCCEEEEEECEETTEECC
T ss_pred             CEEEEEEecCCEEEEEECCCCcEEEEEECCCCCe--EEEEECCCEEEEE-CCCCeEEEEECCCCcEEEEEEECCCCcccc
Confidence            444 555678899999999998888775321111  2244545555555 468899999999988777654211     2


Q ss_pred             cEEEEEEcCCCCeEEEEeCCCcEEEEecCccceehccccc-------------ccceEEEEEeeCCCEE-EEEeCCCcEE
Q 021247          245 WVLSVDASPDGAAITTGSSDRTVKLWDLNMRAAMQSMTNH-------------TDQVWGVSFRPLGGRV-VSVSDDKSIS  310 (315)
Q Consensus       245 ~i~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~-------------~~~v~~~~~s~~~~~l-~s~~~d~~i~  310 (315)
                      .++.+.+. ++++.+....++.|.+.|..+++.+.++.-.             .....+++|+|+++.+ +++....++.
T Consensus       153 ~~nele~~-dg~lyvn~~~~~~V~vID~~tg~V~~~I~~~g~~~~~~~~~~~~~~v~nGIa~~~~~~~lfVTgk~~~~v~  231 (266)
T 2iwa_A          153 RLNELEYI-NGEVWANIWQTDCIARISAKDGTLLGWILLPNLRKKLIDEGFRDIDVLNGIAWDQENKRIFVTGKLWPKLF  231 (266)
T ss_dssp             CEEEEEEE-TTEEEEEETTSSEEEEEETTTCCEEEEEECHHHHHHHHHTTCTTCCCEEEEEEETTTTEEEEEETTCSEEE
T ss_pred             cceeEEEE-CCEEEEecCCCCeEEEEECCCCcEEEEEECCCcccccccccccccCceEEEEEcCCCCEEEEECCCCCeEE
Confidence            36788888 6766666666889999999998877665421             1356899999998866 5666677777


Q ss_pred             Eeec
Q 021247          311 LYEY  314 (315)
Q Consensus       311 i~~~  314 (315)
                      ..++
T Consensus       232 ~i~l  235 (266)
T 2iwa_A          232 EIKL  235 (266)
T ss_dssp             EEEE
T ss_pred             EEEE
Confidence            6654

>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1

Probab=99.25  E-value=6.8e-08  Score=77.71  Aligned_cols=217  Identities=9%  Similarity=0.056  Sum_probs=134.9

Q ss_pred             CeEEEEECCCCcee-----EEeeCCcccEEEEEECCCCCeEEEEecCCCeEEEEecCCcceeeeecCCCCCCCCCCccCC
Q 021247           82 SFVRVFDVDTNASI-----ATLEASPSEVWQMQFDPKGTTLAVAGGGSASVKLWDTATWNLIATLSIPRPEGLKPTDKSS  156 (315)
Q Consensus        82 ~~i~~w~~~~~~~~-----~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~  156 (315)
                      +.|+.++++.....     ..+.........++++|.+..++++....+.|..+|............             
T Consensus        10 ~~I~~~~~~g~~~~~~~~~~~~~~~~~~~~gi~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~-------------   76 (267)
T 1npe_A           10 GKIERLPLERNTMKKTEAKAFLHIPAKVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTTIIRQ-------------   76 (267)
T ss_dssp             EEEEEEEESSSCBCGGGCEEEEEEEEEEEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEEEECT-------------
T ss_pred             CeEEEEEecCcccccccceeeecCCCCcEEEEEEecCCCEEEEEECCCCEEEEEecCCCCcEEEEEC-------------
Confidence            47888888765321     112212235678999998888888887889999999876433222110             


Q ss_pred             CCcceEEEEECCCCCE-EEEecCCCcEEEEEcccceeeeeecCCccceEEEEEcCCCCcEEEEEeC--CCeEEEEeCCCC
Q 021247          157 SKKFVLSVAWSPDGRR-IACGSMDGTISVFDVTRAKFLHHLEGHFMPVRSLVYSPVDPRVLFSASD--DTHVHMYDAEGK  233 (315)
Q Consensus       157 ~~~~i~~~~~~~~~~~-l~~~s~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~--d~~i~~wd~~~~  233 (315)
                      .......+++++++.. +++....+.|.++++..................++++|.++.++++...  .+.|..++....
T Consensus        77 ~~~~p~~ia~d~~~~~lyv~d~~~~~I~~~~~~g~~~~~~~~~~~~~P~~i~vd~~~g~lyv~~~~~~~~~I~~~~~dg~  156 (267)
T 1npe_A           77 DLGSPEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQRRVLFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGT  156 (267)
T ss_dssp             TCCCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSC
T ss_pred             CCCCccEEEEEecCCeEEEEECCCCEEEEEEcCCCCEEEEEECCCCCccEEEEeeCCCEEEEEECCCCCcEEEEEecCCC
Confidence            0123678999997554 4556677899999986432222222222456899999866666666544  478888887654


Q ss_pred             eeEEEeecccccEEEEEEcCCCCeE-EEEeCCCcEEEEecCccceehcccccccceEEEEEeeCCCEEE-EEeCCCcEEE
Q 021247          234 SLVTAMSGHASWVLSVDASPDGAAI-TTGSSDRTVKLWDLNMRAAMQSMTNHTDQVWGVSFRPLGGRVV-SVSDDKSISL  311 (315)
Q Consensus       234 ~~~~~~~~~~~~i~~~~~~~~~~~l-~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~-s~~~d~~i~i  311 (315)
                      ...............++++|++..| ++-...+.|.+++............ .....+++.  ++..|. +-...+.|.+
T Consensus       157 ~~~~~~~~~~~~P~gia~d~~~~~lyv~d~~~~~I~~~~~~g~~~~~~~~~-~~~P~gi~~--d~~~lyva~~~~~~v~~  233 (267)
T 1npe_A          157 NRRILAQDNLGLPNGLTFDAFSSQLCWVDAGTHRAECLNPAQPGRRKVLEG-LQYPFAVTS--YGKNLYYTDWKTNSVIA  233 (267)
T ss_dssp             CCEEEECTTCSCEEEEEEETTTTEEEEEETTTTEEEEEETTEEEEEEEEEC-CCSEEEEEE--ETTEEEEEETTTTEEEE
T ss_pred             CcEEEEECCCCCCcEEEEcCCCCEEEEEECCCCEEEEEecCCCceEEEecC-CCCceEEEE--eCCEEEEEECCCCeEEE
Confidence            3322222334567899999976655 5555668899999975443322222 234456665  345554 4445578888


Q ss_pred             eec
Q 021247          312 YEY  314 (315)
Q Consensus       312 ~~~  314 (315)
                      ++.
T Consensus       234 ~d~  236 (267)
T 1npe_A          234 MDL  236 (267)
T ss_dssp             EET
T ss_pred             EeC
Confidence            775

>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}

Probab=99.25  E-value=1.6e-09  Score=89.94  Aligned_cols=250  Identities=12%  Similarity=0.027  Sum_probs=152.4

Q ss_pred             EEEEeeCCCcEEEEcCCCCcceeeccccccceEEEEeCCCCCEEEEeeCCCeEEEEECCCCceeEEeeCCcccEEEEEEC
Q 021247           32 LLLTGSLDETVKLWRPDDMQLERTNTGHCLGVVSVAAHPSGIIAASASLDSFVRVFDVDTNASIATLEASPSEVWQMQFD  111 (315)
Q Consensus        32 ~l~sgs~d~~v~~w~~~~~~~~~~~~~h~~~v~~~~~~~~g~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~v~~~~~~  111 (315)
                      .++.++.+  |..+|. +.+................+.  +..+..++.++.+..+|.. ++...........+..+...
T Consensus        72 ~l~v~t~~--l~~~d~-~g~~~~~~~~~~~~~~~~~~~--~~~l~v~t~~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~~  145 (330)
T 3hxj_A           72 TIYFGSDK--VYAINP-DGTEKWRFDTKKAIVSDFTIF--EDILYVTSMDGHLYAINTD-GTEKWRFKTKKAIYATPIVS  145 (330)
T ss_dssp             EECCSSCE--EEEECC-CGGGGGGSCC-----CCEEEE--TTEEEEECTTSEEEEECTT-SCEEEEEECSSCCCSCCEEC
T ss_pred             cEEEecCc--EEEECC-CCcEEEEEECCCCcccCceEE--CCEEEEEecCCEEEEEcCC-CCEEEEEcCCCceeeeeEEc
Confidence            46666655  888886 444433332222111122222  4455667788999999988 66666655544445555666


Q ss_pred             CCCCeEEEEecCCCeEEEEecCCcceeeeecCCCCCCCCCCccCCCCcceEEEEECCCCCEEEEecCCCcEEEEEcccce
Q 021247          112 PKGTTLAVAGGGSASVKLWDTATWNLIATLSIPRPEGLKPTDKSSSKKFVLSVAWSPDGRRIACGSMDGTISVFDVTRAK  191 (315)
Q Consensus       112 ~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~s~dg~i~i~d~~~~~  191 (315)
                      +++. + ..+..++.+..+|.. ++....+..+..             .+.++...+++...+ ++  +.+..+| .+++
T Consensus       146 ~~g~-l-~vgt~~~~l~~~d~~-g~~~~~~~~~~~-------------~~~~~~~d~~g~l~v-~t--~~l~~~d-~~g~  205 (330)
T 3hxj_A          146 EDGT-I-YVGSNDNYLYAINPD-GTEKWRFKTNDA-------------ITSAASIGKDGTIYF-GS--DKVYAIN-PDGT  205 (330)
T ss_dssp             TTSC-E-EEECTTSEEEEECTT-SCEEEEEECSSC-------------CCSCCEECTTCCEEE-ES--SSEEEEC-TTSC
T ss_pred             CCCE-E-EEEcCCCEEEEECCC-CCEeEEEecCCC-------------ceeeeEEcCCCEEEE-Ee--CEEEEEC-CCCc
Confidence            6666 3 345677899999988 676665543211             244566666776544 44  8899999 6666


Q ss_pred             eeeeecCCccceEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCeeEEEeecccccEEEEEEcCCCCeEEEEeCCCcEEEEe
Q 021247          192 FLHHLEGHFMPVRSLVYSPVDPRVLFSASDDTHVHMYDAEGKSLVTAMSGHASWVLSVDASPDGAAITTGSSDRTVKLWD  271 (315)
Q Consensus       192 ~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~d~~i~iwd  271 (315)
                      ...........+.++...+ ++ .+..++.++.|..+|..+. .+.........+..+.+.+++. |..++.++.|..+|
T Consensus       206 ~~~~~~~~~~~~~~~~~~~-~g-~l~v~t~~~gl~~~~~~g~-~~~~~~~~~~~~~~~~~~~~g~-l~v~t~~ggl~~~d  281 (330)
T 3hxj_A          206 EKWNFYAGYWTVTRPAISE-DG-TIYVTSLDGHLYAINPDGT-EKWRFKTGKRIESSPVIGNTDT-IYFGSYDGHLYAIN  281 (330)
T ss_dssp             EEEEECCSSCCCSCCEECT-TS-CEEEEETTTEEEEECTTSC-EEEEEECSSCCCSCCEECTTSC-EEEECTTCEEEEEC
T ss_pred             EEEEEccCCcceeceEECC-CC-eEEEEcCCCeEEEECCCCC-EeEEeeCCCCccccceEcCCCe-EEEecCCCCEEEEC
Confidence            6555554445566666665 33 4666777888888886444 3333333333333455565654 66778888899999


Q ss_pred             cCccceehcccccccceEEEEEeeCCCEEEEEeCCCcEEEee
Q 021247          272 LNMRAAMQSMTNHTDQVWGVSFRPLGGRVVSVSDDKSISLYE  313 (315)
Q Consensus       272 ~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~i~i~~  313 (315)
                      . .++.+.........+.++...++|. |..++.+|.+++..
T Consensus       282 ~-~g~~~~~~~~~~~~~~~~~~d~~g~-l~~gt~~G~~~~~~  321 (330)
T 3hxj_A          282 P-DGTEKWNFETGSWIIATPVIDENGT-IYFGTRNGKFYALF  321 (330)
T ss_dssp             T-TSCEEEEEECSSCCCSCCEECTTCC-EEEECTTSCEEEEE
T ss_pred             C-CCcEEEEEEcCCccccceEEcCCCE-EEEEcCCCeEEEEe
Confidence            6 4555444443444566667767765 67788999998765

>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}

Probab=99.23  E-value=7.8e-09  Score=87.64  Aligned_cols=222  Identities=14%  Similarity=0.132  Sum_probs=144.5

Q ss_pred             CCCcEEEEeeCCCcEEEEcCCCC----cceeecc------cc-ccceEEEEeCCCCCEEEEeeCC------CeEEEEECC
Q 021247           28 TRPALLLTGSLDETVKLWRPDDM----QLERTNT------GH-CLGVVSVAAHPSGIIAASASLD------SFVRVFDVD   90 (315)
Q Consensus        28 ~~~~~l~sgs~d~~v~~w~~~~~----~~~~~~~------~h-~~~v~~~~~~~~g~~l~s~~~d------~~i~~w~~~   90 (315)
                      +++-++++|-.++.|.++|..+.    ++.+.+.      .. ......+...|+| +++++..+      +.+.+.|..
T Consensus        94 ~r~~l~v~~l~s~~I~viD~~t~p~~p~~~k~ie~~~~~~~~g~s~Ph~~~~~pdG-i~Vs~~g~~~g~~~g~v~vlD~~  172 (462)
T 2ece_A           94 ERRFLIVPGLRSSRIYIIDTKPNPREPKIIKVIEPEEVKKVSGYSRLHTVHCGPDA-IYISALGNEEGEGPGGILMLDHY  172 (462)
T ss_dssp             CSCEEEEEBTTTCCEEEEECCSCTTSCEEEEEECHHHHHHHHCEEEEEEEEECSSC-EEEEEEEETTSCSCCEEEEECTT
T ss_pred             cCCEEEEccCCCCeEEEEECCCCCCCceeeeeechhhcccccCCCcccceeECCCe-EEEEcCCCcCCCCCCeEEEEECC
Confidence            34457788888999999997643    4444441      00 1134567788999 66665554      789999999


Q ss_pred             CCceeEEeeCCccc---EEEEEECCCCCeEEEEec-------------------CCCeEEEEecCCcceeeeecCCCCCC
Q 021247           91 TNASIATLEASPSE---VWQMQFDPKGTTLAVAGG-------------------GSASVKLWDTATWNLIATLSIPRPEG  148 (315)
Q Consensus        91 ~~~~~~~~~~~~~~---v~~~~~~~~~~~~~~~~~-------------------~d~~i~~~d~~~~~~~~~~~~~~~~~  148 (315)
                      +.+.+.++.....+   -..+-|+|+++.++ +..                   ...+|.+||+.+.+.+.++.+...  
T Consensus       173 T~~v~~~~~~~~~~~~~~Yd~~~~p~~~~mv-sS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~~~k~~~tI~vg~~--  249 (462)
T 2ece_A          173 SFEPLGKWEIDRGDQYLAYDFWWNLPNEVLV-SSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLRKRKRIHSLTLGEE--  249 (462)
T ss_dssp             TCCEEEECCSBCTTCCCCCCEEEETTTTEEE-ECBCCCHHHHTTCCCTTTHHHHSCCEEEEEETTTTEEEEEEESCTT--
T ss_pred             CCeEEEEEccCCCCccccceEEECCCCCEEE-EccCcCccccccccchhhhhhccCCEEEEEECCCCcEeeEEecCCC--
Confidence            99988887643222   33567899988554 442                   368999999998887777765311  


Q ss_pred             CCCCccCCCCcceEEEEE--CCCCCEEEEec------CCCcEEEEEcccceee--ee--ecCC----------------c
Q 021247          149 LKPTDKSSSKKFVLSVAW--SPDGRRIACGS------MDGTISVFDVTRAKFL--HH--LEGH----------------F  200 (315)
Q Consensus       149 ~~~~~~~~~~~~i~~~~~--~~~~~~l~~~s------~dg~i~i~d~~~~~~~--~~--~~~~----------------~  200 (315)
                               ......+.|  +|+++++.++.      .++.|.+|....++..  +.  +...                .
T Consensus       250 ---------g~~P~~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d~g~~~~~~vIdi~~~~v~~~lp~~~~~f~~~~  320 (462)
T 2ece_A          250 ---------NRMALELRPLHDPTKLMGFINMVVSLKDLSSSIWLWFYEDGKWNAEKVIEIPAEPLEGNLPEILKPFKAVP  320 (462)
T ss_dssp             ---------EEEEEEEEECSSTTCCEEEEEEEEETTTCCEEEEEEEEETTEEEEEEEEEECCEECCSSCCGGGGGGTEEC
T ss_pred             ---------CCccceeEeeECCCCCEEEEEEeeeccCCCceEEEEEecCCceeEEEEEeCCCccccccccccccccccCC
Confidence                     112345555  99999887665      5667877655433221  11  1100                1


Q ss_pred             cceEEEEEcCCCCcEEEEEeCCCeEEEEeCCC---CeeEEEeeccc--------------ccEEEEEEcCCCCeEEEEe
Q 021247          201 MPVRSLVYSPVDPRVLFSASDDTHVHMYDAEG---KSLVTAMSGHA--------------SWVLSVDASPDGAAITTGS  262 (315)
Q Consensus       201 ~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~---~~~~~~~~~~~--------------~~i~~~~~~~~~~~l~s~~  262 (315)
                      .....+.++|++..++++.-..+.|.+||+..   .+++..+....              +....+.++|+|++|+++.
T Consensus       321 ~~pa~I~lS~DGrfLYVSnrg~d~VavfdV~d~~~~~lv~~I~tGG~~~~~~~~~G~~~~ggPr~~~lSpDGk~LyVaN  399 (462)
T 2ece_A          321 PLVTDIDISLDDKFLYLSLWGIGEVRQYDISNPFKPVLTGKVKLGGIFHRADHPAGHKLTGAPQMLEISRDGRRVYVTN  399 (462)
T ss_dssp             CCCCCEEECTTSCEEEEEETTTTEEEEEECSSTTSCEEEEEEECBTTTTCBCCTTSCCCCSCCCCEEECTTSSEEEEEC
T ss_pred             CceeEEEECCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEEEEeCCeeccccccccccCCCCCCEEEEcCCCCEEEEEc
Confidence            34678899996555556666688999999752   34444443220              1367899999999988877

>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A

Probab=99.21  E-value=9.1e-09  Score=81.05  Aligned_cols=181  Identities=8%  Similarity=0.070  Sum_probs=130.0

Q ss_pred             eEEEEeCCCCCEEEEeeCCC--eEEEEECCCCceeEEeeCCccc-EEEEEECCCCCeEEEEecCCCeEEEEecCCcceee
Q 021247           63 VVSVAAHPSGIIAASASLDS--FVRVFDVDTNASIATLEASPSE-VWQMQFDPKGTTLAVAGGGSASVKLWDTATWNLIA  139 (315)
Q Consensus        63 v~~~~~~~~g~~l~s~~~d~--~i~~w~~~~~~~~~~~~~~~~~-v~~~~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~  139 (315)
                      ...|.|+ ++.++.+.+.+|  .|+++|+.+++.+..+...... -..+..  .+..+++....++.+.+||..+.+.+.
T Consensus        45 tqGL~~~-~~~LyestG~~g~S~v~~vD~~Tgkv~~~~~l~~~~FgeGit~--~g~~ly~ltw~~~~v~v~D~~t~~~~~  121 (262)
T 3nol_A           45 TEGFFYR-NGYFYESTGLNGRSSIRKVDIESGKTLQQIELGKRYFGEGISD--WKDKIVGLTWKNGLGFVWNIRNLRQVR  121 (262)
T ss_dssp             EEEEEEE-TTEEEEEEEETTEEEEEEECTTTCCEEEEEECCTTCCEEEEEE--ETTEEEEEESSSSEEEEEETTTCCEEE
T ss_pred             cceEEEE-CCEEEEECCCCCCceEEEEECCCCcEEEEEecCCccceeEEEE--eCCEEEEEEeeCCEEEEEECccCcEEE
Confidence            4677787 678888888876  8999999999988887654332 123444  455677777778999999999999998


Q ss_pred             eecCCCCCCCCCCccCCCCcceEEEEECCCCCEEEEecCCCcEEEEEcccceeeeeecCC--c---cceEEEEEcCCCCc
Q 021247          140 TLSIPRPEGLKPTDKSSSKKFVLSVAWSPDGRRIACGSMDGTISVFDVTRAKFLHHLEGH--F---MPVRSLVYSPVDPR  214 (315)
Q Consensus       140 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~s~dg~i~i~d~~~~~~~~~~~~~--~---~~v~~~~~~~~~~~  214 (315)
                      ++..+. ++             ..++  ++++.|+.+..++.|.++|..+.+.+..+...  .   ..++.+.|.  +++
T Consensus       122 ti~~~~-eG-------------~glt--~dg~~L~~SdGs~~i~~iDp~T~~v~~~I~V~~~g~~~~~lNELe~~--~G~  183 (262)
T 3nol_A          122 SFNYDG-EG-------------WGLT--HNDQYLIMSDGTPVLRFLDPESLTPVRTITVTAHGEELPELNELEWV--DGE  183 (262)
T ss_dssp             EEECSS-CC-------------CCEE--ECSSCEEECCSSSEEEEECTTTCSEEEEEECEETTEECCCEEEEEEE--TTE
T ss_pred             EEECCC-Cc-------------eEEe--cCCCEEEEECCCCeEEEEcCCCCeEEEEEEeccCCccccccceeEEE--CCE
Confidence            886532 11             1233  56777776666788999999988877765432  1   223456665  566


Q ss_pred             EEEEEeCCCeEEEEeCCCCeeEEEeecc------------cccEEEEEEcCCCCeEEEEeCC
Q 021247          215 VLFSASDDTHVHMYDAEGKSLVTAMSGH------------ASWVLSVDASPDGAAITTGSSD  264 (315)
Q Consensus       215 ~l~s~~~d~~i~~wd~~~~~~~~~~~~~------------~~~i~~~~~~~~~~~l~s~~~d  264 (315)
                      +++..-.+..|.+.|.++++++..+.-.            ..-.+.|+++|+++.|...++.
T Consensus       184 lyan~w~~~~I~vIDp~tG~V~~~Id~~~L~~~~~~~~~~~~vlNGIA~dp~~~~lfVTGK~  245 (262)
T 3nol_A          184 IFANVWQTNKIVRIDPETGKVTGIIDLNGILAEAGPLPSPIDVLNGIAWDKEHHRLFVTGKL  245 (262)
T ss_dssp             EEEEETTSSEEEEECTTTCBEEEEEECTTGGGGSCSCCSSCCCEEEEEEETTTTEEEEEETT
T ss_pred             EEEEEccCCeEEEEECCCCcEEEEEECCcCccccccccCcCCceEEEEEcCCCCEEEEECCC
Confidence            6766667889999999999988776531            1346899999988777666654

>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3

Probab=99.18  E-value=2e-07  Score=76.67  Aligned_cols=225  Identities=13%  Similarity=0.112  Sum_probs=140.2

Q ss_pred             ceEEEEeCCCCCEEEEeeCCCeEEEEECCCCceeEEeeCCcccEEEEEECCCCCeEEEEecC-C-CeEEEEecCCcceee
Q 021247           62 GVVSVAAHPSGIIAASASLDSFVRVFDVDTNASIATLEASPSEVWQMQFDPKGTTLAVAGGG-S-ASVKLWDTATWNLIA  139 (315)
Q Consensus        62 ~v~~~~~~~~g~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~-d-~~i~~~d~~~~~~~~  139 (315)
                      ....+.++++|.++++-..++.|..||.... ....+. .......++++++++. +++... + ..|..+|..+++...
T Consensus        33 ~pegia~~~~g~lyv~d~~~~~I~~~d~~g~-~~~~~~-~~~~p~gia~~~dG~l-~vad~~~~~~~v~~~d~~~g~~~~  109 (306)
T 2p4o_A           33 FLENLASAPDGTIFVTNHEVGEIVSITPDGN-QQIHAT-VEGKVSGLAFTSNGDL-VATGWNADSIPVVSLVKSDGTVET  109 (306)
T ss_dssp             CEEEEEECTTSCEEEEETTTTEEEEECTTCC-EEEEEE-CSSEEEEEEECTTSCE-EEEEECTTSCEEEEEECTTSCEEE
T ss_pred             CcceEEECCCCCEEEEeCCCCeEEEECCCCc-eEEEEe-CCCCceeEEEcCCCcE-EEEeccCCcceEEEEcCCCCeEEE
Confidence            4678899999998888778899999998754 333333 2356788999999884 444433 2 247777776665443


Q ss_pred             eecCCCCCCCCCCccCCCCcceEEEEECCCCCEEEEecCCCcEEEEEcccce--eeee--------ecCCccceEEEEEc
Q 021247          140 TLSIPRPEGLKPTDKSSSKKFVLSVAWSPDGRRIACGSMDGTISVFDVTRAK--FLHH--------LEGHFMPVRSLVYS  209 (315)
Q Consensus       140 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~s~dg~i~i~d~~~~~--~~~~--------~~~~~~~v~~~~~~  209 (315)
                      ....+.            ......++..+++..+++-..++.|+.+|...++  ....        ..........+  +
T Consensus       110 ~~~~~~------------~~~~~g~~~~~~~~~~v~d~~~g~i~~~d~~~~~~~v~~~~~~~~~~~~~~~~~~pngi--s  175 (306)
T 2p4o_A          110 LLTLPD------------AIFLNGITPLSDTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGL--K  175 (306)
T ss_dssp             EEECTT------------CSCEEEEEESSSSEEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEEE--E
T ss_pred             EEeCCC------------ccccCcccccCCCcEEEEECCCCeEEEEeCCCCcEeEEEECCccccccccCCCCcCCCc--C
Confidence            222211            1123455555555555666668899999986542  2100        00111234455  6


Q ss_pred             CCCCcEEEEEeCCCeEEEEeCCC-Cee--EEEeecccccEEEEEEcCCCCeEEEEeCCCcEEEEecCccce--ehccccc
Q 021247          210 PVDPRVLFSASDDTHVHMYDAEG-KSL--VTAMSGHASWVLSVDASPDGAAITTGSSDRTVKLWDLNMRAA--MQSMTNH  284 (315)
Q Consensus       210 ~~~~~~l~s~~~d~~i~~wd~~~-~~~--~~~~~~~~~~i~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~--~~~~~~~  284 (315)
                      |++..++++-...+.|..|+... ++.  ...+.. ......++++++|++.++....+.|.+++.. ++.  +..+...
T Consensus       176 ~dg~~lyv~d~~~~~I~~~~~~~~g~~~~~~~~~~-~~~P~gi~vd~dG~l~va~~~~~~V~~~~~~-G~~~~~~~~~~~  253 (306)
T 2p4o_A          176 RFGNFLYVSNTEKMLLLRIPVDSTDKPGEPEIFVE-QTNIDDFAFDVEGNLYGATHIYNSVVRIAPD-RSTTIIAQAEQG  253 (306)
T ss_dssp             EETTEEEEEETTTTEEEEEEBCTTSCBCCCEEEEE-SCCCSSEEEBTTCCEEEECBTTCCEEEECTT-CCEEEEECGGGT
T ss_pred             cCCCEEEEEeCCCCEEEEEEeCCCCCCCccEEEec-cCCCCCeEECCCCCEEEEeCCCCeEEEECCC-CCEEEEeecccc
Confidence            65556677777789999999864 321  111111 1235568899999887777778899999976 444  2233333


Q ss_pred             ccceEEEEEe---eCCCEEEEEeC
Q 021247          285 TDQVWGVSFR---PLGGRVVSVSD  305 (315)
Q Consensus       285 ~~~v~~~~~s---~~~~~l~s~~~  305 (315)
                      ...+++++|.   |+++.|+.+..
T Consensus       254 ~~~p~~~a~~g~~~d~~~LyVt~~  277 (306)
T 2p4o_A          254 VIGSTAVAFGQTEGDCTAIYVVTN  277 (306)
T ss_dssp             CTTEEEEEECCSTTTTTEEEEEEC
T ss_pred             cCCceEEEEecccCCCCEEEEECC
Confidence            3568899999   88887765554

>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}

Probab=99.17  E-value=3e-07  Score=76.97  Aligned_cols=227  Identities=7%  Similarity=-0.012  Sum_probs=146.1

Q ss_pred             CCcEEEEcCCCCcceeeccccccceEEEEeCCC-CCEEEEeeCCCeEEEEECCCCceeEEeeCCcccEEEEEECCCCCeE
Q 021247           39 DETVKLWRPDDMQLERTNTGHCLGVVSVAAHPS-GIIAASASLDSFVRVFDVDTNASIATLEASPSEVWQMQFDPKGTTL  117 (315)
Q Consensus        39 d~~v~~w~~~~~~~~~~~~~h~~~v~~~~~~~~-g~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~  117 (315)
                      ...|+..+++.........+. ..+..+++++. +.++++-...+.|+.+++........+.........+++++.+..+
T Consensus        52 ~~~I~~i~~~g~~~~~~~~~~-~~~~~l~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~~~~~~p~glavd~~~g~l  130 (349)
T 3v64_C           52 RIDIRQVLPHRSEYTLLLNNL-ENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVSTGLESPGGLAVDWVHDKL  130 (349)
T ss_dssp             BSCEEEECTTSCCEEEEECSC-SCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCEEEEETTTTEE
T ss_pred             ccceEEEeCCCCeeEEeecCC-CceEEEEEeccccEEEEEeccCCceEEEecCCCCceEEEeCCCCCccEEEEecCCCeE
Confidence            456777877665544433332 34678899864 5566666677899999988765444443333445678888877778


Q ss_pred             EEEecCCCeEEEEecCCcceeeeecCCCCCCCCCCccCCCCcceEEEEECCCCCE-EEEecCC-CcEEEEEcccceeeee
Q 021247          118 AVAGGGSASVKLWDTATWNLIATLSIPRPEGLKPTDKSSSKKFVLSVAWSPDGRR-IACGSMD-GTISVFDVTRAKFLHH  195 (315)
Q Consensus       118 ~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~-l~~~s~d-g~i~i~d~~~~~~~~~  195 (315)
                      +++-...+.|.+.++..........             ........++++|.+.. +++-... +.|..+++........
T Consensus       131 y~~d~~~~~I~~~~~dG~~~~~l~~-------------~~l~~P~~iavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~~  197 (349)
T 3v64_C          131 YWTDSGTSRIEVANLDGAHRKVLLW-------------QSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSGRRII  197 (349)
T ss_dssp             EEEETTTTEEEEEETTSCSCEEEEC-------------TTCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEES
T ss_pred             EEEcCCCCeEEEEcCCCCceEEEEe-------------CCCCCcceEEEecCcCeEEEeccCCCCEEEEEeCCCCCcEEE
Confidence            7887778899999886533221111             01123578999986554 4555555 7898888764332222


Q ss_pred             ecCCccceEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCeeEEEeecccccEEEEEEcCCCCeEEEEeCCCcEEEEecCcc
Q 021247          196 LEGHFMPVRSLVYSPVDPRVLFSASDDTHVHMYDAEGKSLVTAMSGHASWVLSVDASPDGAAITTGSSDRTVKLWDLNMR  275 (315)
Q Consensus       196 ~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~d~~i~iwd~~~~  275 (315)
                      ..........++++|.++.++++-...+.|..+|..+................+++. .+.+.++-...+.|..++..++
T Consensus       198 ~~~~~~~PnGla~d~~~~~lY~aD~~~~~I~~~~~dG~~~~~~~~~~~~~P~giav~-~~~ly~td~~~~~V~~~~~~~G  276 (349)
T 3v64_C          198 ADTHLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGSHRKAVISQGLPHPFAITVF-EDSLYWTDWHTKSINSANKFTG  276 (349)
T ss_dssp             CCSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEE-TTEEEEEETTTTEEEEEETTTC
T ss_pred             EECCCCCcceEEEeCCCCEEEEEECCCCEEEEEeCCCCceEEEEeCCCCCceEEEEE-CCEEEEecCCCCeEEEEEccCC
Confidence            222334568999998777777887788899999987654433333344567788883 5566677777888888885555


Q ss_pred             ceehc
Q 021247          276 AAMQS  280 (315)
Q Consensus       276 ~~~~~  280 (315)
                      +....
T Consensus       277 ~~~~~  281 (349)
T 3v64_C          277 KNQEI  281 (349)
T ss_dssp             CSCEE
T ss_pred             CccEE
Confidence            44333

>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}

Probab=99.16  E-value=1.7e-07  Score=79.67  Aligned_cols=229  Identities=8%  Similarity=-0.007  Sum_probs=148.4

Q ss_pred             CCCcEEEEcCCCCcceeeccccccceEEEEeCCC-CCEEEEeeCCCeEEEEECCCCceeEEeeCCcccEEEEEECCCCCe
Q 021247           38 LDETVKLWRPDDMQLERTNTGHCLGVVSVAAHPS-GIIAASASLDSFVRVFDVDTNASIATLEASPSEVWQMQFDPKGTT  116 (315)
Q Consensus        38 ~d~~v~~w~~~~~~~~~~~~~h~~~v~~~~~~~~-g~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~v~~~~~~~~~~~  116 (315)
                      ....|+..+++.........+ ...+..+++++. +.++++-...+.|+.+++........+.........+++++.+..
T Consensus        94 ~~~~I~~i~~~~~~~~~~~~~-~~~~~gl~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~~~~~~p~glavd~~~g~  172 (386)
T 3v65_B           94 NRIDIRQVLPHRSEYTLLLNN-LENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVSTGLESPGGLAVDWVHDK  172 (386)
T ss_dssp             CBSCEEEECTTSCCCEEEECS-CSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCEEEEECSSCSCCCCEEEETTTTE
T ss_pred             cCccceeeccCCCcEEEEecC-CCccEEEEEecCCCeEEEEeCCCCcEEEEecCCCCcEEEEeCCCCCccEEEEEeCCCe
Confidence            346788888776554444332 234678899864 556666667789999998876544444333334567888887777


Q ss_pred             EEEEecCCCeEEEEecCCcceeeeecCCCCCCCCCCccCCCCcceEEEEECCCCCEE-EEecCC-CcEEEEEcccceeee
Q 021247          117 LAVAGGGSASVKLWDTATWNLIATLSIPRPEGLKPTDKSSSKKFVLSVAWSPDGRRI-ACGSMD-GTISVFDVTRAKFLH  194 (315)
Q Consensus       117 ~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l-~~~s~d-g~i~i~d~~~~~~~~  194 (315)
                      ++++-...+.|.+.++........+.             ........++++|.+..| ++-... +.|..+++.......
T Consensus       173 lY~~d~~~~~I~~~~~dg~~~~~l~~-------------~~l~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~  239 (386)
T 3v65_B          173 LYWTDSGTSRIEVANLDGAHRKVLLW-------------QSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSGRRI  239 (386)
T ss_dssp             EEEEETTTTEEEECBTTSCSCEEEEC-------------SSCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEE
T ss_pred             EEEEcCCCCeEEEEeCCCCceEEeec-------------CCCCCCcEEEEEcCCCeEEEeccCCCCEEEEEeCCCCCcEE
Confidence            87877777888888876432221111             011236789999866554 444444 788888886433222


Q ss_pred             eecCCccceEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCeeEEEeecccccEEEEEEcCCCCeEEEEeCCCcEEEEecCc
Q 021247          195 HLEGHFMPVRSLVYSPVDPRVLFSASDDTHVHMYDAEGKSLVTAMSGHASWVLSVDASPDGAAITTGSSDRTVKLWDLNM  274 (315)
Q Consensus       195 ~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~d~~i~iwd~~~  274 (315)
                      ...........++++|.+++++++-...+.|..+|..+................+++ ..+.++++....+.|..++..+
T Consensus       240 ~~~~~~~~PnGlavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~~~~~~P~giav-~~~~ly~td~~~~~V~~~~~~~  318 (386)
T 3v65_B          240 IADTHLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGSHRKAVISQGLPHPFAITV-FEDSLYWTDWHTKSINSANKFT  318 (386)
T ss_dssp             EECSSCSCEEEEEEEGGGTEEEEEETTTTEEEEECTTSCSCEEEECSSCSSEEEEEE-ETTEEEEEETTTTEEEEEETTT
T ss_pred             EEECCCCCeeeEEEeCCCCEEEEEECCCCEEEEEeCCCCeeEEEEECCCCCceEEEE-ECCEEEEeeCCCCeEEEEECCC
Confidence            222333456899999877777888788899999998765443334334456778888 4556677777788898888655


Q ss_pred             cceehcc
Q 021247          275 RAAMQSM  281 (315)
Q Consensus       275 ~~~~~~~  281 (315)
                      ++....+
T Consensus       319 G~~~~~i  325 (386)
T 3v65_B          319 GKNQEII  325 (386)
T ss_dssp             CCSCEEE
T ss_pred             CcceEEE
Confidence            5544444

>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A

Probab=99.14  E-value=2.7e-08  Score=78.32  Aligned_cols=190  Identities=11%  Similarity=0.093  Sum_probs=127.6

Q ss_pred             eEEeeCCcc-cEEEEEECCCCCeEEEEecCCC--eEEEEecCCcceeeeecCCCCCCCCCCccCCCCcceEEEEECCCCC
Q 021247           95 IATLEASPS-EVWQMQFDPKGTTLAVAGGGSA--SVKLWDTATWNLIATLSIPRPEGLKPTDKSSSKKFVLSVAWSPDGR  171 (315)
Q Consensus        95 ~~~~~~~~~-~v~~~~~~~~~~~~~~~~~~d~--~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~  171 (315)
                      +.++.+... ....+.|+ ++ .++.+.+.++  .|+++|+.+++.+..+.++..            .+-..++..  ++
T Consensus        34 v~~~phd~~~ftqGL~~~-~~-~LyestG~~g~S~v~~vD~~Tgkv~~~~~l~~~------------~FgeGit~~--g~   97 (262)
T 3nol_A           34 VHSYPHDTKAFTEGFFYR-NG-YFYESTGLNGRSSIRKVDIESGKTLQQIELGKR------------YFGEGISDW--KD   97 (262)
T ss_dssp             EEEEECCTTCEEEEEEEE-TT-EEEEEEEETTEEEEEEECTTTCCEEEEEECCTT------------CCEEEEEEE--TT
T ss_pred             EEEecCCCCcccceEEEE-CC-EEEEECCCCCCceEEEEECCCCcEEEEEecCCc------------cceeEEEEe--CC
Confidence            455544333 35688887 44 5667777665  899999999999988865422            112234443  44


Q ss_pred             EE-EEecCCCcEEEEEcccceeeeeecCCccceEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCeeEEEeecc----c-cc
Q 021247          172 RI-ACGSMDGTISVFDVTRAKFLHHLEGHFMPVRSLVYSPVDPRVLFSASDDTHVHMYDAEGKSLVTAMSGH----A-SW  245 (315)
Q Consensus       172 ~l-~~~s~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~----~-~~  245 (315)
                      .| ++.-.++.+.+||..+.+.+..+...... ..++  +++..++++ ..++.|.++|.++.+.+..+.-.    . ..
T Consensus        98 ~ly~ltw~~~~v~v~D~~t~~~~~ti~~~~eG-~glt--~dg~~L~~S-dGs~~i~~iDp~T~~v~~~I~V~~~g~~~~~  173 (262)
T 3nol_A           98 KIVGLTWKNGLGFVWNIRNLRQVRSFNYDGEG-WGLT--HNDQYLIMS-DGTPVLRFLDPESLTPVRTITVTAHGEELPE  173 (262)
T ss_dssp             EEEEEESSSSEEEEEETTTCCEEEEEECSSCC-CCEE--ECSSCEEEC-CSSSEEEEECTTTCSEEEEEECEETTEECCC
T ss_pred             EEEEEEeeCCEEEEEECccCcEEEEEECCCCc-eEEe--cCCCEEEEE-CCCCeEEEEcCCCCeEEEEEEeccCCccccc
Confidence            44 44557889999999999988877643221 2333  334444444 45788999999988877765431    1 34


Q ss_pred             EEEEEEcCCCCeEEEEeCCCcEEEEecCccceehccccc------------ccceEEEEEeeCCCEEEEEeC
Q 021247          246 VLSVDASPDGAAITTGSSDRTVKLWDLNMRAAMQSMTNH------------TDQVWGVSFRPLGGRVVSVSD  305 (315)
Q Consensus       246 i~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~------------~~~v~~~~~s~~~~~l~s~~~  305 (315)
                      ++.+.+. +|++.+..-.+..|.+.|.++++.+..+...            .+-.++++|+|+++.|+..|.
T Consensus       174 lNELe~~-~G~lyan~w~~~~I~vIDp~tG~V~~~Id~~~L~~~~~~~~~~~~vlNGIA~dp~~~~lfVTGK  244 (262)
T 3nol_A          174 LNELEWV-DGEIFANVWQTNKIVRIDPETGKVTGIIDLNGILAEAGPLPSPIDVLNGIAWDKEHHRLFVTGK  244 (262)
T ss_dssp             EEEEEEE-TTEEEEEETTSSEEEEECTTTCBEEEEEECTTGGGGSCSCCSSCCCEEEEEEETTTTEEEEEET
T ss_pred             cceeEEE-CCEEEEEEccCCeEEEEECCCCcEEEEEECCcCccccccccCcCCceEEEEEcCCCCEEEEECC
Confidence            5667776 6776666667889999999998876655321            135689999999888876654

>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1

Probab=99.14  E-value=2.3e-08  Score=91.15  Aligned_cols=280  Identities=16%  Similarity=0.148  Sum_probs=169.7

Q ss_pred             cEEEEeeCCCcEEEEcCCCCcceeecccccc----------ce-EEEEeCCCCCEEEEeeCCCeEEEEECCCCceeEEee
Q 021247           31 ALLLTGSLDETVKLWRPDDMQLERTNTGHCL----------GV-VSVAAHPSGIIAASASLDSFVRVFDVDTNASIATLE   99 (315)
Q Consensus        31 ~~l~sgs~d~~v~~w~~~~~~~~~~~~~h~~----------~v-~~~~~~~~g~~l~s~~~d~~i~~w~~~~~~~~~~~~   99 (315)
                      ..++.++.++.|.-+|..+++..........          .+ ..+.+  .+..++.++.|+.|..+|..+++.+..+.
T Consensus        67 g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~v~v~~~dg~l~alD~~tG~~~W~~~  144 (668)
T 1kv9_A           67 GVIYTSMSWSRVIAVDAASGKELWRYDPEVAKVKARTSCCDAVNRGVAL--WGDKVYVGTLDGRLIALDAKTGKAIWSQQ  144 (668)
T ss_dssp             TEEEEEEGGGEEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCEE--EBTEEEEECTTSEEEEEETTTCCEEEEEE
T ss_pred             CEEEEECCCCeEEEEECCCChhceEECCCCCccccccccccCCccceEE--ECCEEEEEcCCCEEEEEECCCCCEeeeec
Confidence            4678888899999999988887655432110          00 01111  24567778889999999999999887765


Q ss_pred             CCccc-EEEEEECC--CCCeEEEEecC-----CCeEEEEecCCcceeeeecCCCCCCCCCCc----------cC------
Q 021247          100 ASPSE-VWQMQFDP--KGTTLAVAGGG-----SASVKLWDTATWNLIATLSIPRPEGLKPTD----------KS------  155 (315)
Q Consensus       100 ~~~~~-v~~~~~~~--~~~~~~~~~~~-----d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~----------~~------  155 (315)
                      ..... ...+.-.|  .+..+++..+.     ++.|..+|.++++.+..+............          ..      
T Consensus       145 ~~~~~~~~~~~~~P~v~~~~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~~g~~~w~  224 (668)
T 1kv9_A          145 TTDPAKPYSITGAPRVVKGKVIIGNGGAEYGVRGFVSAYDADTGKLAWRFYTVPGDPALPYEHPELREAAKTWQGDQYWK  224 (668)
T ss_dssp             CSCTTSSCBCCSCCEEETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTTCCSSCHHH
T ss_pred             cCCCCCcceecCCCEEECCEEEEeCCCCCcCCCCEEEEEECCCCcEEEEecccCCCCCccccccccccccccCCccceee
Confidence            42110 00000011  12334443322     589999999999999887642111000000          00      


Q ss_pred             --CCCcceEEEEECCCCCEEEEecCCC-------------------cEEEEEcccceeeeeecC--Cc-------cceEE
Q 021247          156 --SSKKFVLSVAWSPDGRRIACGSMDG-------------------TISVFDVTRAKFLHHLEG--HF-------MPVRS  205 (315)
Q Consensus       156 --~~~~~i~~~~~~~~~~~l~~~s~dg-------------------~i~i~d~~~~~~~~~~~~--~~-------~~v~~  205 (315)
                        ........++++|+.+.++.++.++                   .|..+|+.+++.+-....  |.       .+...
T Consensus       225 ~~~gg~~w~~~a~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~l~~~~v~AlD~~tG~~~W~~~~~~~~~wd~~~~~~~~~  304 (668)
T 1kv9_A          225 LGGGGTVWDSMAYDPELDLLYVGTGNGSPWNREVRSPGGGDNLYLSSILAIRPDTGKLAWHYQVTPGDSWDFTATQQITL  304 (668)
T ss_dssp             HCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCCCCCSCEEE
T ss_pred             eCCCCccccceEEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEcCCCCceeeEeecCCCccccccCCCCcEE
Confidence              0001123468888888888887766                   399999999987655432  21       22222


Q ss_pred             EEEcCCCCc---EEEEEeCCCeEEEEeCCCCeeEEEeeccc-ccE-----------------------------------
Q 021247          206 LVYSPVDPR---VLFSASDDTHVHMYDAEGKSLVTAMSGHA-SWV-----------------------------------  246 (315)
Q Consensus       206 ~~~~~~~~~---~l~s~~~d~~i~~wd~~~~~~~~~~~~~~-~~i-----------------------------------  246 (315)
                      ..+.. +++   .++.++.+|.++++|.++++++....... .+.                                   
T Consensus       305 ~d~~~-~G~~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~~~~d~~~g~p~~~~~~~~~~~~~~~~p~~~G~~~w  383 (668)
T 1kv9_A          305 AELNI-DGKPRKVLMQAPKNGFFYVLDRTNGKLISAEKFGKVTWAEKVDLATGRPVEAPGVRYEKEPIVMWPSPFGAHNW  383 (668)
T ss_dssp             EEEEE-TTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCCSEEEECTTTCCEEECTTTTCSSSCEEESSCTTCSSCS
T ss_pred             EEecc-CCcEEEEEEEECCCCEEEEEECCCCCEeccccccccccccccccccCCccccccccccCCeeEECCCCccccCC
Confidence            22222 332   68899999999999999988774332110 000                                   


Q ss_pred             EEEEEcCCCCeEEEE------------------------------------eCCCcEEEEecCccceehcccccccceEE
Q 021247          247 LSVDASPDGAAITTG------------------------------------SSDRTVKLWDLNMRAAMQSMTNHTDQVWG  290 (315)
Q Consensus       247 ~~~~~~~~~~~l~s~------------------------------------~~d~~i~iwd~~~~~~~~~~~~~~~~v~~  290 (315)
                      ..++++|+..++...                                    ..+|.|..||+.+++.+=+...+ ...+.
T Consensus       384 ~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~p~~~~~g~l~A~D~~tG~~~W~~~~~-~~~~~  462 (668)
T 1kv9_A          384 HSMSFNPGTGLVYIPYQEVPGVYRNEGKDFVTRKAFNTAAGFADATDVPAAVVSGALLAWDPVKQKAAWKVPYP-THWNG  462 (668)
T ss_dssp             SCCEEETTTTEEEEEEEECCEEECCCGGGCCCCSSCCCSSCGGGCCCCCGGGCEEEEEEEETTTTEEEEEEEES-SSCCC
T ss_pred             CcceECCCCCEEEEeccccceEeeeeccccccccccccCccccccCCCCCCCccceEEEEeCCCCcEEEEccCC-CCCcC
Confidence            015667765554431                                    13478999999998765433322 33444


Q ss_pred             EEEeeCCCEEEEEeCCCcEEEeec
Q 021247          291 VSFRPLGGRVVSVSDDKSISLYEY  314 (315)
Q Consensus       291 ~~~s~~~~~l~s~~~d~~i~i~~~  314 (315)
                      ..+...+..|+.++.|+.++.||.
T Consensus       463 ~~~~t~gg~vf~g~~dg~l~a~d~  486 (668)
T 1kv9_A          463 GTLSTAGNLVFQGTAAGQMHAYSA  486 (668)
T ss_dssp             CEEEETTTEEEEECTTSEEEEEET
T ss_pred             ceeEeCCCEEEEECCcccchhhhh
Confidence            556677889999999999999985

>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}

Probab=99.13  E-value=1.4e-08  Score=79.90  Aligned_cols=178  Identities=8%  Similarity=0.057  Sum_probs=127.1

Q ss_pred             eEEEEeCCCCCEEEEeeCCCeEEEEECCCCceeEEeeCCcccE--EEEEECCCCCeEEEEecCCCeEEEEecCCcceeee
Q 021247           63 VVSVAAHPSGIIAASASLDSFVRVFDVDTNASIATLEASPSEV--WQMQFDPKGTTLAVAGGGSASVKLWDTATWNLIAT  140 (315)
Q Consensus        63 v~~~~~~~~g~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~v--~~~~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~  140 (315)
                      ...|.++ .+.++.+.+.++.|+++|+.+++.+..+ ... ..  ..+++  .+..+++....++.+.+||..+.+.+.+
T Consensus        57 tqGL~~~-~~~Ly~stG~~g~v~~iD~~Tgkv~~~~-l~~-~~FgeGit~--~g~~Ly~ltw~~~~v~V~D~~Tl~~~~t  131 (268)
T 3nok_A           57 TQGLVFH-QGHFFESTGHQGTLRQLSLESAQPVWME-RLG-NIFAEGLAS--DGERLYQLTWTEGLLFTWSGMPPQRERT  131 (268)
T ss_dssp             EEEEEEE-TTEEEEEETTTTEEEECCSSCSSCSEEE-ECT-TCCEEEEEE--CSSCEEEEESSSCEEEEEETTTTEEEEE
T ss_pred             cceEEEE-CCEEEEEcCCCCEEEEEECCCCcEEeEE-CCC-CcceeEEEE--eCCEEEEEEccCCEEEEEECCcCcEEEE
Confidence            4567776 4678888999999999999999988776 332 32  33555  4456667777889999999999999988


Q ss_pred             ecCCCCCCCCCCccCCCCcceEEEEECCCCCEEEEecCCCcEEEEEcccceeeeeecCC--cc---ceEEEEEcCCCCcE
Q 021247          141 LSIPRPEGLKPTDKSSSKKFVLSVAWSPDGRRIACGSMDGTISVFDVTRAKFLHHLEGH--FM---PVRSLVYSPVDPRV  215 (315)
Q Consensus       141 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~s~dg~i~i~d~~~~~~~~~~~~~--~~---~v~~~~~~~~~~~~  215 (315)
                      +..+.. +             ..++  ++++.|+.+..++.|.++|..+.+.+..+.-.  ..   .++.+.|.  ++++
T Consensus       132 i~~~~e-G-------------wGLt--~Dg~~L~vSdGs~~l~~iDp~T~~v~~~I~V~~~g~~v~~lNeLe~~--dG~l  193 (268)
T 3nok_A          132 TRYSGE-G-------------WGLC--YWNGKLVRSDGGTMLTFHEPDGFALVGAVQVKLRGQPVELINELECA--NGVI  193 (268)
T ss_dssp             EECSSC-C-------------CCEE--EETTEEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE--TTEE
T ss_pred             EeCCCc-e-------------eEEe--cCCCEEEEECCCCEEEEEcCCCCeEEEEEEeCCCCcccccccccEEe--CCEE
Confidence            865321 1             1333  46777777767889999999998887766432  11   34566666  5666


Q ss_pred             EEEEeCCCeEEEEeCCCCeeEEEeecc-------------cccEEEEEEcCCCCeEEEEeC
Q 021247          216 LFSASDDTHVHMYDAEGKSLVTAMSGH-------------ASWVLSVDASPDGAAITTGSS  263 (315)
Q Consensus       216 l~s~~~d~~i~~wd~~~~~~~~~~~~~-------------~~~i~~~~~~~~~~~l~s~~~  263 (315)
                      ++..-.+..|.+.|.++++++..+.-.             ..-.+.|+++|+++.|+..++
T Consensus       194 yanvw~s~~I~vIDp~TG~V~~~Idl~~L~~~~~~~~~~~~~vlNGIA~dp~~~rlfVTGK  254 (268)
T 3nok_A          194 YANIWHSSDVLEIDPATGTVVGVIDASALTRAVAGQVTNPEAVLNGIAVEPGSGRIFMTGK  254 (268)
T ss_dssp             EEEETTCSEEEEECTTTCBEEEEEECHHHHHHHTTTCCCTTCCEEEEEECTTTCCEEEEET
T ss_pred             EEEECCCCeEEEEeCCCCcEEEEEECCCCcccccccccCcCCceEEEEEcCCCCEEEEeCC
Confidence            666667889999999999888776521             135689999997665555444

>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}

Probab=99.10  E-value=8.2e-07  Score=74.33  Aligned_cols=233  Identities=10%  Similarity=0.032  Sum_probs=145.2

Q ss_pred             EEEEeCCCCCEEEEeeCCCeEEEEECCCCceeEEeeCCcccEEEEEECCCCCeEEEEecCCCeEEEEecCCcceeeeecC
Q 021247           64 VSVAAHPSGIIAASASLDSFVRVFDVDTNASIATLEASPSEVWQMQFDPKGTTLAVAGGGSASVKLWDTATWNLIATLSI  143 (315)
Q Consensus        64 ~~~~~~~~g~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~  143 (315)
                      .+....+++.++++-  ...|+..++........+. .......++|++.+..++++-...+.|..++.........+..
T Consensus        37 ~C~~~~~~~~ll~~~--~~~I~~i~~~g~~~~~~~~-~~~~~~~l~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~~  113 (349)
T 3v64_C           37 SCKALGPEPVLLFAN--RIDIRQVLPHRSEYTLLLN-NLENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVST  113 (349)
T ss_dssp             CEEESSSCCEEEEEC--BSCEEEECTTSCCEEEEEC-SCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECS
T ss_pred             cccccccCceeEeec--ccceEEEeCCCCeeEEeec-CCCceEEEEEeccccEEEEEeccCCceEEEecCCCCceEEEeC
Confidence            344555544444433  3458888887654433333 3455789999988888888877788999998876443222211


Q ss_pred             CCCCCCCCCccCCCCcceEEEEECCCC-CEEEEecCCCcEEEEEcccceeeeeecCCccceEEEEEcCCCCcEEEEEeCC
Q 021247          144 PRPEGLKPTDKSSSKKFVLSVAWSPDG-RRIACGSMDGTISVFDVTRAKFLHHLEGHFMPVRSLVYSPVDPRVLFSASDD  222 (315)
Q Consensus       144 ~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~l~~~s~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d  222 (315)
                                   .......+++.+.+ +.+++-...+.|.+.++........+.......+.+++.|.++.++++-...
T Consensus       114 -------------~~~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~~~l~~~~l~~P~~iavdp~~g~ly~td~~~  180 (349)
T 3v64_C          114 -------------GLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKVLLWQSLEKPRAIALHPMEGTIYWTDWGN  180 (349)
T ss_dssp             -------------SCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECTTCSCEEEEEEETTTTEEEEEECSS
T ss_pred             -------------CCCCccEEEEecCCCeEEEEcCCCCeEEEEcCCCCceEEEEeCCCCCcceEEEecCcCeEEEeccCC
Confidence                         01124578888754 4556666778999999865433223333345678999998777777777666


Q ss_pred             -CeEEEEeCCCCeeEEEeecccccEEEEEEcCCCCeE-EEEeCCCcEEEEecCccceehcccccccceEEEEEeeCCCEE
Q 021247          223 -THVHMYDAEGKSLVTAMSGHASWVLSVDASPDGAAI-TTGSSDRTVKLWDLNMRAAMQSMTNHTDQVWGVSFRPLGGRV  300 (315)
Q Consensus       223 -~~i~~wd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l-~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l  300 (315)
                       +.|..+++.+..............+.++++|++..| ++-...+.|..++++.......+........++++ ..+...
T Consensus       181 ~~~I~r~~~dG~~~~~~~~~~~~~PnGla~d~~~~~lY~aD~~~~~I~~~~~dG~~~~~~~~~~~~~P~giav-~~~~ly  259 (349)
T 3v64_C          181 TPRIEASSMDGSGRRIIADTHLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGSHRKAVISQGLPHPFAITV-FEDSLY  259 (349)
T ss_dssp             SCEEEEEETTSCSCEESCCSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEE-ETTEEE
T ss_pred             CCEEEEEeCCCCCcEEEEECCCCCcceEEEeCCCCEEEEEECCCCEEEEEeCCCCceEEEEeCCCCCceEEEE-ECCEEE
Confidence             889999987654433333345568899999865544 55556678999998743222222222345677777 344444


Q ss_pred             EEEeCCCcEEEee
Q 021247          301 VSVSDDKSISLYE  313 (315)
Q Consensus       301 ~s~~~d~~i~i~~  313 (315)
                      ++-...+.|..++
T Consensus       260 ~td~~~~~V~~~~  272 (349)
T 3v64_C          260 WTDWHTKSINSAN  272 (349)
T ss_dssp             EEETTTTEEEEEE
T ss_pred             EecCCCCeEEEEE
Confidence            5555556666654

>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}

Probab=99.10  E-value=1.1e-07  Score=74.19  Aligned_cols=182  Identities=12%  Similarity=0.050  Sum_probs=127.7

Q ss_pred             ceEEEEeCCCCCEEEEeeCC--CeEEEEECCCCceeEEeeCCccc-EEEEEECCCCCeEEEEecCCCeEEEEecCCccee
Q 021247           62 GVVSVAAHPSGIIAASASLD--SFVRVFDVDTNASIATLEASPSE-VWQMQFDPKGTTLAVAGGGSASVKLWDTATWNLI  138 (315)
Q Consensus        62 ~v~~~~~~~~g~~l~s~~~d--~~i~~w~~~~~~~~~~~~~~~~~-v~~~~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~  138 (315)
                      ....+.|++ +.++.+.+.+  +.|+.+|+.+++.+..+...... -..+..  .+..++.....++.+.+||..+.+.+
T Consensus        22 ftqGL~~~~-~~LyestG~~g~S~v~~vD~~tgkv~~~~~l~~~~fgeGi~~--~~~~ly~ltw~~~~v~v~D~~tl~~~   98 (243)
T 3mbr_X           22 FTEGLFYLR-GHLYESTGETGRSSVRKVDLETGRILQRAEVPPPYFGAGIVA--WRDRLIQLTWRNHEGFVYDLATLTPR   98 (243)
T ss_dssp             CEEEEEEET-TEEEEEECCTTSCEEEEEETTTCCEEEEEECCTTCCEEEEEE--ETTEEEEEESSSSEEEEEETTTTEEE
T ss_pred             ccccEEEEC-CEEEEECCCCCCceEEEEECCCCCEEEEEeCCCCcceeEEEE--eCCEEEEEEeeCCEEEEEECCcCcEE
Confidence            456778876 6777777775  48999999999988877654332 123343  35567777778899999999999999


Q ss_pred             eeecCCCCCCCCCCccCCCCcceEEEEECCCCCEEEEecCCCcEEEEEcccceeeeeecCCc-----cceEEEEEcCCCC
Q 021247          139 ATLSIPRPEGLKPTDKSSSKKFVLSVAWSPDGRRIACGSMDGTISVFDVTRAKFLHHLEGHF-----MPVRSLVYSPVDP  213 (315)
Q Consensus       139 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~s~dg~i~i~d~~~~~~~~~~~~~~-----~~v~~~~~~~~~~  213 (315)
                      .++..+..              -..++  ++++.|+.+..++.|.++|..+.+.+..+.-..     ..++.+.+.  ++
T Consensus        99 ~ti~~~~~--------------Gwglt--~dg~~L~vSdgs~~l~~iDp~t~~~~~~I~V~~~g~~~~~lNeLe~~--~G  160 (243)
T 3mbr_X           99 ARFRYPGE--------------GWALT--SDDSHLYMSDGTAVIRKLDPDTLQQVGSIKVTAGGRPLDNLNELEWV--NG  160 (243)
T ss_dssp             EEEECSSC--------------CCEEE--ECSSCEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE--TT
T ss_pred             EEEeCCCC--------------ceEEe--eCCCEEEEECCCCeEEEEeCCCCeEEEEEEEccCCcccccceeeEEe--CC
Confidence            88865321              12344  456666666668899999999988777665321     234555655  56


Q ss_pred             cEEEEEeCCCeEEEEeCCCCeeEEEeecc-------------cccEEEEEEcCCCCeEEEEeCC
Q 021247          214 RVLFSASDDTHVHMYDAEGKSLVTAMSGH-------------ASWVLSVDASPDGAAITTGSSD  264 (315)
Q Consensus       214 ~~l~s~~~d~~i~~wd~~~~~~~~~~~~~-------------~~~i~~~~~~~~~~~l~s~~~d  264 (315)
                      ++++..-.+..|.+.|.++++++..+.-.             ..-.+.|+++|+++.|...++.
T Consensus       161 ~lyanvw~s~~I~vIDp~tG~V~~~idl~~l~~~~~~~~~~~~~vlNGIA~d~~~~~lfVTGK~  224 (243)
T 3mbr_X          161 ELLANVWLTSRIARIDPASGKVVAWIDLQALVPDADALTDSTNDVLNGIAFDAEHDRLFVTGKR  224 (243)
T ss_dssp             EEEEEETTTTEEEEECTTTCBEEEEEECGGGSTTTTSCCCTTSSCEEEEEEETTTTEEEEEETT
T ss_pred             EEEEEECCCCeEEEEECCCCCEEEEEECCcCccccccccCCcCCceEEEEEcCCCCEEEEECCC
Confidence            66666667889999999999988776521             1356889999987766655543

>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*

Probab=99.09  E-value=2.6e-07  Score=76.43  Aligned_cols=238  Identities=11%  Similarity=0.065  Sum_probs=144.1

Q ss_pred             ceEEEEeCCCCCEEEEeeCCCeEEEEECCCCceeEEeeC--------------------CcccEEEEEECCCCCeEEEEe
Q 021247           62 GVVSVAAHPSGIIAASASLDSFVRVFDVDTNASIATLEA--------------------SPSEVWQMQFDPKGTTLAVAG  121 (315)
Q Consensus        62 ~v~~~~~~~~g~~l~s~~~d~~i~~w~~~~~~~~~~~~~--------------------~~~~v~~~~~~~~~~~~~~~~  121 (315)
                      ....+.++++|.++.++..++.|..|+..++... .+..                    .......+++++++..++++.
T Consensus        20 ~p~~i~~d~~g~~l~v~~~~~~i~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~~~~~~~~~~p~gi~~~~~~g~l~v~d   98 (322)
T 2fp8_A           20 APNSFTFDSTNKGFYTSVQDGRVIKYEGPNSGFV-DFAYASPYWNKAFCENSTDAEKRPLCGRTYDISYNLQNNQLYIVD   98 (322)
T ss_dssp             CCCCEECCTTCSSEEEECTTSEEEEECCTTTCEE-EEEESCTTCCHHHHTTCCCGGGHHHHCCEEEEEEETTTTEEEEEE
T ss_pred             CceEEEEcCCCCEEEEEcCCCeEEEECCCCCceE-EEecccccccccccccccchhccccCCCCceEEEcCCCCcEEEEE
Confidence            4567788999987778888899999988765432 2211                    012467899997334455543


Q ss_pred             cCCCeEEEEecCCcceeeeecCCCCCCCCCCccCCCCcceEEEEECC-CCCEEEEecC-----------------CCcEE
Q 021247          122 GGSASVKLWDTATWNLIATLSIPRPEGLKPTDKSSSKKFVLSVAWSP-DGRRIACGSM-----------------DGTIS  183 (315)
Q Consensus       122 ~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~s~-----------------dg~i~  183 (315)
                      . ...+..+|..+++.. .+... ..+       ........+++.+ +|+..++-..                 ++.|.
T Consensus        99 ~-~~~i~~~d~~~g~~~-~~~~~-~~~-------~~~~~p~~i~~d~~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~  168 (322)
T 2fp8_A           99 C-YYHLSVVGSEGGHAT-QLATS-VDG-------VPFKWLYAVTVDQRTGIVYFTDVSTLYDDRGVQQIMDTSDKTGRLI  168 (322)
T ss_dssp             T-TTEEEEECTTCEECE-EEESE-ETT-------EECSCEEEEEECTTTCCEEEEESCSSCCTTCHHHHHHHTCCCEEEE
T ss_pred             C-CCCEEEEeCCCCEEE-Eeccc-CCC-------CcccccceEEEecCCCEEEEECCcccccccccceehcccCCCceEE
Confidence            3 345888887654321 11100 000       0112367899999 8886665432                 37799


Q ss_pred             EEEcccceeeeeecCCccceEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCe--eEEEeecccccEEEEEEcCCCCeEEEE
Q 021247          184 VFDVTRAKFLHHLEGHFMPVRSLVYSPVDPRVLFSASDDTHVHMYDAEGKS--LVTAMSGHASWVLSVDASPDGAAITTG  261 (315)
Q Consensus       184 i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~--~~~~~~~~~~~i~~~~~~~~~~~l~s~  261 (315)
                      .+|..+++...... .......++++|++..++++-...+.|.+|+..+..  ....+....+ ...++++++|.+.++.
T Consensus       169 ~~d~~~~~~~~~~~-~~~~p~gia~~~dg~~lyv~d~~~~~I~~~~~~~~~~~~~~~~~~~~g-P~gi~~d~~G~l~va~  246 (322)
T 2fp8_A          169 KYDPSTKETTLLLK-ELHVPGGAEVSADSSFVLVAEFLSHQIVKYWLEGPKKGTAEVLVKIPN-PGNIKRNADGHFWVSS  246 (322)
T ss_dssp             EEETTTTEEEEEEE-EESCCCEEEECTTSSEEEEEEGGGTEEEEEESSSTTTTCEEEEEECSS-EEEEEECTTSCEEEEE
T ss_pred             EEeCCCCEEEEecc-CCccCcceEECCCCCEEEEEeCCCCeEEEEECCCCcCCccceEEeCCC-CCCeEECCCCCEEEEe
Confidence            99987665432221 122346789998544456666777899999987421  1111111223 7789999999876665


Q ss_pred             eC----------CCcEEEEecCccceehccccc----ccceEEEEEeeCCCEEEEEeCCCcEEEeec
Q 021247          262 SS----------DRTVKLWDLNMRAAMQSMTNH----TDQVWGVSFRPLGGRVVSVSDDKSISLYEY  314 (315)
Q Consensus       262 ~~----------d~~i~iwd~~~~~~~~~~~~~----~~~v~~~~~s~~~~~l~s~~~d~~i~i~~~  314 (315)
                      ..          .+.|..+|.. ++.+..+...    ...+.++++ .++...++....+.|..+++
T Consensus       247 ~~~~~~~~~~~~~~~v~~~d~~-G~~~~~~~~~~g~~~~~~~~~~~-~~g~L~v~~~~~~~i~~~~~  311 (322)
T 2fp8_A          247 SEELDGNMHGRVDPKGIKFDEF-GNILEVIPLPPPFAGEHFEQIQE-HDGLLYIGTLFHGSVGILVY  311 (322)
T ss_dssp             EEETTSSTTSCEEEEEEEECTT-SCEEEEEECCTTTTTSCCCEEEE-ETTEEEEECSSCSEEEEEEC
T ss_pred             cCcccccccCCCccEEEEECCC-CCEEEEEECCCCCccccceEEEE-eCCEEEEeecCCCceEEEec
Confidence            44          4667788764 5555444332    234666766 45655566667788988875

>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}

Probab=99.08  E-value=2.9e-07  Score=71.85  Aligned_cols=191  Identities=13%  Similarity=0.090  Sum_probs=128.4

Q ss_pred             eEEeeCCc-ccEEEEEECCCCCeEEEEecCC--CeEEEEecCCcceeeeecCCCCCCCCCCccCCCCcceEEEEECCCCC
Q 021247           95 IATLEASP-SEVWQMQFDPKGTTLAVAGGGS--ASVKLWDTATWNLIATLSIPRPEGLKPTDKSSSKKFVLSVAWSPDGR  171 (315)
Q Consensus        95 ~~~~~~~~-~~v~~~~~~~~~~~~~~~~~~d--~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~  171 (315)
                      +.++.+.+ .....+.|++  ..++.+.+.+  ..|+.+|+.+++.+....++...            +-..++... ++
T Consensus        12 ~~~~phd~~~ftqGL~~~~--~~LyestG~~g~S~v~~vD~~tgkv~~~~~l~~~~------------fgeGi~~~~-~~   76 (243)
T 3mbr_X           12 VKRYPHDTTAFTEGLFYLR--GHLYESTGETGRSSVRKVDLETGRILQRAEVPPPY------------FGAGIVAWR-DR   76 (243)
T ss_dssp             EEEEECCTTCCEEEEEEET--TEEEEEECCTTSCEEEEEETTTCCEEEEEECCTTC------------CEEEEEEET-TE
T ss_pred             EEEcCCCCccccccEEEEC--CEEEEECCCCCCceEEEEECCCCCEEEEEeCCCCc------------ceeEEEEeC-CE
Confidence            44554332 3467888986  4566776665  48999999999999888664321            122344432 33


Q ss_pred             EEEEecCCCcEEEEEcccceeeeeecCCccceEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCeeEEEeeccc-----ccE
Q 021247          172 RIACGSMDGTISVFDVTRAKFLHHLEGHFMPVRSLVYSPVDPRVLFSASDDTHVHMYDAEGKSLVTAMSGHA-----SWV  246 (315)
Q Consensus       172 ~l~~~s~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~-----~~i  246 (315)
                      .....-.++.+.+||..+.+.+..+...... ..++  +++.++++| ..++.|.++|.++.+.+..+.-..     ..+
T Consensus        77 ly~ltw~~~~v~v~D~~tl~~~~ti~~~~~G-wglt--~dg~~L~vS-dgs~~l~~iDp~t~~~~~~I~V~~~g~~~~~l  152 (243)
T 3mbr_X           77 LIQLTWRNHEGFVYDLATLTPRARFRYPGEG-WALT--SDDSHLYMS-DGTAVIRKLDPDTLQQVGSIKVTAGGRPLDNL  152 (243)
T ss_dssp             EEEEESSSSEEEEEETTTTEEEEEEECSSCC-CEEE--ECSSCEEEE-CSSSEEEEECTTTCCEEEEEECEETTEECCCE
T ss_pred             EEEEEeeCCEEEEEECCcCcEEEEEeCCCCc-eEEe--eCCCEEEEE-CCCCeEEEEeCCCCeEEEEEEEccCCcccccc
Confidence            4455567899999999999998887643322 3444  334455555 458899999999988777664321     345


Q ss_pred             EEEEEcCCCCeEEEEeCCCcEEEEecCccceehcccc-------------cccceEEEEEeeCCCEEEEEeC
Q 021247          247 LSVDASPDGAAITTGSSDRTVKLWDLNMRAAMQSMTN-------------HTDQVWGVSFRPLGGRVVSVSD  305 (315)
Q Consensus       247 ~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~-------------~~~~v~~~~~s~~~~~l~s~~~  305 (315)
                      +.+.+. +|++.+..-.+..|.+.|.++++.+..+..             ..+-.++++++|+++.|+..|.
T Consensus       153 NeLe~~-~G~lyanvw~s~~I~vIDp~tG~V~~~idl~~l~~~~~~~~~~~~~vlNGIA~d~~~~~lfVTGK  223 (243)
T 3mbr_X          153 NELEWV-NGELLANVWLTSRIARIDPASGKVVAWIDLQALVPDADALTDSTNDVLNGIAFDAEHDRLFVTGK  223 (243)
T ss_dssp             EEEEEE-TTEEEEEETTTTEEEEECTTTCBEEEEEECGGGSTTTTSCCCTTSSCEEEEEEETTTTEEEEEET
T ss_pred             eeeEEe-CCEEEEEECCCCeEEEEECCCCCEEEEEECCcCccccccccCCcCCceEEEEEcCCCCEEEEECC
Confidence            667766 666666665678999999999887665431             1235789999999888766553

>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*

Probab=99.06  E-value=9.7e-06  Score=75.56  Aligned_cols=277  Identities=9%  Similarity=0.095  Sum_probs=172.4

Q ss_pred             ccceEEEEEeecCCCCCcEEEEeeCCCcEEEEcCCCCcceeeccc-------cccceEEEEeCCCCCEEEEeeCCCeEEE
Q 021247           14 EESVWAVTWVPATETRPALLLTGSLDETVKLWRPDDMQLERTNTG-------HCLGVVSVAAHPSGIIAASASLDSFVRV   86 (315)
Q Consensus        14 ~~~v~~v~~~~~~~~~~~~l~sgs~d~~v~~w~~~~~~~~~~~~~-------h~~~v~~~~~~~~g~~l~s~~~d~~i~~   86 (315)
                      ...|.++...+.+     .+..|..++-+..|+..+.+.......       ....|.++...++|.+.+.. .+ .|.+
T Consensus       214 ~~~i~~i~~d~~g-----~lwigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWigt-~~-Gl~~  286 (795)
T 4a2l_A          214 TKQIQAILQQSPT-----RIWVATEGAGLFLINPKTKEIKNYLHSPSNPKSISSNYIRSLAMDSQNRLWIGT-FN-DLNI  286 (795)
T ss_dssp             CCCEEEEEEEETT-----EEEEEEBSSCEEEEETTTTEEEEECCCTTCTTSCSCSBEEEEEECTTSCEEEEE-SS-CEEE
T ss_pred             CCeeEEEEEcCCC-----CEEEEECCCCeEEEeCCCCeEEEeecCCCCccccCCCeEEEEEEcCCCCEEEEe-CC-hhhe
Confidence            3456776655433     366666665688898876554332211       23569999999998876644 44 5889


Q ss_pred             EECCCCceeEEeeC--------CcccEEEEEECCCCCeEEEEecCCCeEEEEecCCcceeeeecCCCCCCCCCCccCCCC
Q 021247           87 FDVDTNASIATLEA--------SPSEVWQMQFDPKGTTLAVAGGGSASVKLWDTATWNLIATLSIPRPEGLKPTDKSSSK  158 (315)
Q Consensus        87 w~~~~~~~~~~~~~--------~~~~v~~~~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~  158 (315)
                      |+..++... .+..        ....|.++..+++|...  .|..++-|..|+..+.+... +.....      ......
T Consensus       287 ~~~~~~~~~-~~~~~~~~~~~l~~~~i~~i~~D~~g~lW--igt~~~Gl~~~~~~~~~~~~-~~~~~~------~~~l~~  356 (795)
T 4a2l_A          287 YHEGTDSFA-SYSSNPVENGSLSQRSVRSIFMDSQGGMW--LGTYFGGLNYYHPIRNRFKN-IRNIPY------KNSLSD  356 (795)
T ss_dssp             EETTTTEEE-EECCCTTSTTSCSSSCEEEEEECTTSCEE--EEESSSCEEEECGGGGSSEE-ECCCTT------SSSCSC
T ss_pred             EcCCCCeEE-EEecCCCCCCCCCCCcEEEEEEeCCcCEE--EEECCCCeEEeCCCcccceE-EcCCCC------CCCCCC
Confidence            998776533 3321        23569999999888744  35566778888876543322 211100      011123


Q ss_pred             cceEEEEECCCCCEEEEecCCCcEEEEEcccceeeeeec--------CCccceEEEEEcCCCCcEEEEEeCCCeEEEEeC
Q 021247          159 KFVLSVAWSPDGRRIACGSMDGTISVFDVTRAKFLHHLE--------GHFMPVRSLVYSPVDPRVLFSASDDTHVHMYDA  230 (315)
Q Consensus       159 ~~i~~~~~~~~~~~l~~~s~dg~i~i~d~~~~~~~~~~~--------~~~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~  230 (315)
                      ..|.++...++|+ |..|+.++.|..||..+++......        .....|.++...+ ++++|..|+.++-|..||.
T Consensus       357 ~~V~~i~~d~~g~-lWiGt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~-~g~~lWigt~~~Gl~~~d~  434 (795)
T 4a2l_A          357 NVVSCIVEDKDKN-LWIGTNDGGLNLYNPITQRFTSYTLQEDESARGIGSNNIKAVYVDE-KKSLVYIGTHAGGLSILHR  434 (795)
T ss_dssp             SSEEEEEECTTSC-EEEEESSSCEEEECTTTCCEEEECCC------CCSCSCEEEEEEET-TTTEEEEEETTTEEEEEET
T ss_pred             CeeEEEEECCCCC-EEEEECCCCeEEEcCCCCcEEEEecCCCCcccCCCCccEEEEEEcC-CCCEEEEEeCcCceeEEeC
Confidence            4588999888775 5557778789999987665433221        1235688888765 4553666777777999998


Q ss_pred             CCCeeEEEee----cccccEEEEEEcCCCCeEEEEeCCCcEEEEecCccceehccc------ccccceEEEEEeeCCCEE
Q 021247          231 EGKSLVTAMS----GHASWVLSVDASPDGAAITTGSSDRTVKLWDLNMRAAMQSMT------NHTDQVWGVSFRPLGGRV  300 (315)
Q Consensus       231 ~~~~~~~~~~----~~~~~i~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~------~~~~~v~~~~~s~~~~~l  300 (315)
                      ++++......    .....|.++..++++.+.+ |+.+ -+.+|+..+++......      .....|.++...++|...
T Consensus       435 ~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~lwi-gt~~-Gl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~lW  512 (795)
T 4a2l_A          435 NSGQVENFNQRNSQLVNENVYAILPDGEGNLWL-GTLS-ALVRFNPEQRSFTTIEKEKDGTPVVSKQITTLFRDSHKRLW  512 (795)
T ss_dssp             TTCCEEEECTTTSCCSCSCEEEEEECSSSCEEE-EESS-CEEEEETTTTEEEECCBCTTCCBCCCCCEEEEEECTTCCEE
T ss_pred             CCCcEEEeecCCCCcCCCeeEEEEECCCCCEEE-EecC-ceeEEeCCCCeEEEccccccccccCCceEEEEEECCCCCEE
Confidence            8765543321    1245689999888887554 4444 48889987654332211      123578899888888766


Q ss_pred             EEEeCCCcEEEee
Q 021247          301 VSVSDDKSISLYE  313 (315)
Q Consensus       301 ~s~~~d~~i~i~~  313 (315)
                      +...  +-+.+|+
T Consensus       513 igt~--~Gl~~~~  523 (795)
T 4a2l_A          513 IGGE--EGLSVFK  523 (795)
T ss_dssp             EEES--SCEEEEE
T ss_pred             EEeC--CceEEEe
Confidence            6554  3465555

>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1

Probab=99.06  E-value=6.1e-08  Score=88.31  Aligned_cols=263  Identities=16%  Similarity=0.172  Sum_probs=154.1

Q ss_pred             cEEEEeeCCCcEEEEcCCCCcceeeccccc-cceEEEEeC---CCCCEEEEee-----CCCeEEEEECCCCceeEEeeCC
Q 021247           31 ALLLTGSLDETVKLWRPDDMQLERTNTGHC-LGVVSVAAH---PSGIIAASAS-----LDSFVRVFDVDTNASIATLEAS  101 (315)
Q Consensus        31 ~~l~sgs~d~~v~~w~~~~~~~~~~~~~h~-~~v~~~~~~---~~g~~l~s~~-----~d~~i~~w~~~~~~~~~~~~~~  101 (315)
                      ..++.++.|+.|..+|..+++......... .....+...   .++.+++..+     .++.|+.+|..+++.+..+...
T Consensus       118 ~~v~v~~~dg~l~alD~~tG~~~W~~~~~~~~~~~~~~~~P~v~~~~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~  197 (668)
T 1kv9_A          118 DKVYVGTLDGRLIALDAKTGKAIWSQQTTDPAKPYSITGAPRVVKGKVIIGNGGAEYGVRGFVSAYDADTGKLAWRFYTV  197 (668)
T ss_dssp             TEEEEECTTSEEEEEETTTCCEEEEEECSCTTSSCBCCSCCEEETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEESS
T ss_pred             CEEEEEcCCCEEEEEECCCCCEeeeeccCCCCCcceecCCCEEECCEEEEeCCCCCcCCCCEEEEEECCCCcEEEEeccc
Confidence            368888999999999999888765543210 000000111   1444444322     2689999999999988776532


Q ss_pred             c---c---------------------------c-EEEEEECCCCCeEEEEecCCC-------------------eEEEEe
Q 021247          102 P---S---------------------------E-VWQMQFDPKGTTLAVAGGGSA-------------------SVKLWD  131 (315)
Q Consensus       102 ~---~---------------------------~-v~~~~~~~~~~~~~~~~~~d~-------------------~i~~~d  131 (315)
                      +   .                           . ...++++|....+++ +..++                   .|..+|
T Consensus       198 ~~~p~~~~~~~~~~~~~~~~~g~~~w~~~~gg~~w~~~a~d~~~~~vy~-~~~~g~~w~~~~~~~~~gd~l~~~~v~AlD  276 (668)
T 1kv9_A          198 PGDPALPYEHPELREAAKTWQGDQYWKLGGGGTVWDSMAYDPELDLLYV-GTGNGSPWNREVRSPGGGDNLYLSSILAIR  276 (668)
T ss_dssp             CCCTTSCCSSHHHHHHHTTCCSSCHHHHCEECCCCSCEEEETTTTEEEE-ECCCEESSCHHHHSTTCCCCTTTTEEEEEC
T ss_pred             CCCCCccccccccccccccCCccceeeeCCCCccccceEEcCCCCEEEE-eCCCCCccccCCCCCCCCCceeeeeEEEEc
Confidence            1   0                           0 113577777775544 44444                   499999


Q ss_pred             cCCcceeeeecCCCCCCCCCCccCCCCcceEEEEECCCCC---EEEEecCCCcEEEEEcccceeeeeecCCc--------
Q 021247          132 TATWNLIATLSIPRPEGLKPTDKSSSKKFVLSVAWSPDGR---RIACGSMDGTISVFDVTRAKFLHHLEGHF--------  200 (315)
Q Consensus       132 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~---~l~~~s~dg~i~i~d~~~~~~~~~~~~~~--------  200 (315)
                      .++++.+..+........    ............+..+|+   .++.++.+|.++++|..+++.+.......        
T Consensus       277 ~~tG~~~W~~~~~~~~~w----d~~~~~~~~~~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~~~~d  352 (668)
T 1kv9_A          277 PDTGKLAWHYQVTPGDSW----DFTATQQITLAELNIDGKPRKVLMQAPKNGFFYVLDRTNGKLISAEKFGKVTWAEKVD  352 (668)
T ss_dssp             TTTCCEEEEEESSTTCCS----CCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCCSEEEEC
T ss_pred             CCCCceeeEeecCCCccc----cccCCCCcEEEEeccCCcEEEEEEEECCCCEEEEEECCCCCEeccccccccccccccc
Confidence            999999888764321100    000001111222223554   68889999999999999998763321110        


Q ss_pred             ----cce------------------------EEEEEcCCCCcEEEE----------------------------------
Q 021247          201 ----MPV------------------------RSLVYSPVDPRVLFS----------------------------------  218 (315)
Q Consensus       201 ----~~v------------------------~~~~~~~~~~~~l~s----------------------------------  218 (315)
                          .++                        ..++++|..+.+++.                                  
T Consensus       353 ~~~g~p~~~~~~~~~~~~~~~~p~~~G~~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~p  432 (668)
T 1kv9_A          353 LATGRPVEAPGVRYEKEPIVMWPSPFGAHNWHSMSFNPGTGLVYIPYQEVPGVYRNEGKDFVTRKAFNTAAGFADATDVP  432 (668)
T ss_dssp             TTTCCEEECTTTTCSSSCEEESSCTTCSSCSSCCEEETTTTEEEEEEEECCEEECCCGGGCCCCSSCCCSSCGGGCCCCC
T ss_pred             cccCCccccccccccCCeeEECCCCccccCCCcceECCCCCEEEEeccccceEeeeeccccccccccccCccccccCCCC
Confidence                000                        014566643333221                                  


Q ss_pred             -EeCCCeEEEEeCCCCeeEEEeecccccEEEEEEcCCCCeEEEEeCCCcEEEEecCccceehcccccccc-eEEEEEeeC
Q 021247          219 -ASDDTHVHMYDAEGKSLVTAMSGHASWVLSVDASPDGAAITTGSSDRTVKLWDLNMRAAMQSMTNHTDQ-VWGVSFRPL  296 (315)
Q Consensus       219 -~~~d~~i~~wd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~-v~~~~~s~~  296 (315)
                       ...++.|..||..+++.+=....+. ......+...+.+++.++.|+.++.||.++++.+..+...... ..-+.+..+
T Consensus       433 ~~~~~g~l~A~D~~tG~~~W~~~~~~-~~~~~~~~t~gg~vf~g~~dg~l~a~d~~tG~~l~~~~~~~~~~~~p~~~~~~  511 (668)
T 1kv9_A          433 AAVVSGALLAWDPVKQKAAWKVPYPT-HWNGGTLSTAGNLVFQGTAAGQMHAYSADKGEALWQFEAQSGIVAAPMTFELA  511 (668)
T ss_dssp             GGGCEEEEEEEETTTTEEEEEEEESS-SCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEET
T ss_pred             CCCccceEEEEeCCCCcEEEEccCCC-CCcCceeEeCCCEEEEECCcccchhhhhhcChhheEecCCCCcccCceEEEEC
Confidence             1134789999999988765443322 2222234446778889999999999999999887665443211 122345567


Q ss_pred             CCE
Q 021247          297 GGR  299 (315)
Q Consensus       297 ~~~  299 (315)
                      |+.
T Consensus       512 G~~  514 (668)
T 1kv9_A          512 GRQ  514 (668)
T ss_dssp             TEE
T ss_pred             CEE
Confidence            763

>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}

Probab=99.04  E-value=1.9e-07  Score=73.53  Aligned_cols=189  Identities=11%  Similarity=0.060  Sum_probs=128.0

Q ss_pred             eEEeeCCcc-cEEEEEECCCCCeEEEEecCCCeEEEEecCCcceeeeecCCCCCCCCCCccCCCCcceEEEEECCCCCEE
Q 021247           95 IATLEASPS-EVWQMQFDPKGTTLAVAGGGSASVKLWDTATWNLIATLSIPRPEGLKPTDKSSSKKFVLSVAWSPDGRRI  173 (315)
Q Consensus        95 ~~~~~~~~~-~v~~~~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l  173 (315)
                      +.++..... ....+.|+  +..++++.+.++.|+++|+.+++.+..+ ++..            .+-..+++.. ++..
T Consensus        46 v~~~phd~~~ftqGL~~~--~~~Ly~stG~~g~v~~iD~~Tgkv~~~~-l~~~------------~FgeGit~~g-~~Ly  109 (268)
T 3nok_A           46 IREYPHATNAFTQGLVFH--QGHFFESTGHQGTLRQLSLESAQPVWME-RLGN------------IFAEGLASDG-ERLY  109 (268)
T ss_dssp             EEEEECCTTCCEEEEEEE--TTEEEEEETTTTEEEECCSSCSSCSEEE-ECTT------------CCEEEEEECS-SCEE
T ss_pred             EEEEcCCCccccceEEEE--CCEEEEEcCCCCEEEEEECCCCcEEeEE-CCCC------------cceeEEEEeC-CEEE
Confidence            444543332 35678886  3578888889999999999999988877 5432            1123455543 2344


Q ss_pred             EEecCCCcEEEEEcccceeeeeecCCccceEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCeeEEEeec--cc---ccEEE
Q 021247          174 ACGSMDGTISVFDVTRAKFLHHLEGHFMPVRSLVYSPVDPRVLFSASDDTHVHMYDAEGKSLVTAMSG--HA---SWVLS  248 (315)
Q Consensus       174 ~~~s~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~--~~---~~i~~  248 (315)
                      .+...++.+.+||..+.+.+..+..... -..++  +++ +.|+.+..++.|.++|.++.+.+..+.-  +.   ..++.
T Consensus       110 ~ltw~~~~v~V~D~~Tl~~~~ti~~~~e-GwGLt--~Dg-~~L~vSdGs~~l~~iDp~T~~v~~~I~V~~~g~~v~~lNe  185 (268)
T 3nok_A          110 QLTWTEGLLFTWSGMPPQRERTTRYSGE-GWGLC--YWN-GKLVRSDGGTMLTFHEPDGFALVGAVQVKLRGQPVELINE  185 (268)
T ss_dssp             EEESSSCEEEEEETTTTEEEEEEECSSC-CCCEE--EET-TEEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEE
T ss_pred             EEEccCCEEEEEECCcCcEEEEEeCCCc-eeEEe--cCC-CEEEEECCCCEEEEEcCCCCeEEEEEEeCCCCcccccccc
Confidence            4556789999999999999888764322 23444  334 4455555688999999999887776542  21   24567


Q ss_pred             EEEcCCCCeEEEEeCCCcEEEEecCccceehcccc-------------cccceEEEEEeeCCCEEEEEe
Q 021247          249 VDASPDGAAITTGSSDRTVKLWDLNMRAAMQSMTN-------------HTDQVWGVSFRPLGGRVVSVS  304 (315)
Q Consensus       249 ~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~-------------~~~~v~~~~~s~~~~~l~s~~  304 (315)
                      +.+. +|++.+..-.+..|.+.|.++++.+..+..             ..+-.++++++|+++.|+..|
T Consensus       186 Le~~-dG~lyanvw~s~~I~vIDp~TG~V~~~Idl~~L~~~~~~~~~~~~~vlNGIA~dp~~~rlfVTG  253 (268)
T 3nok_A          186 LECA-NGVIYANIWHSSDVLEIDPATGTVVGVIDASALTRAVAGQVTNPEAVLNGIAVEPGSGRIFMTG  253 (268)
T ss_dssp             EEEE-TTEEEEEETTCSEEEEECTTTCBEEEEEECHHHHHHHTTTCCCTTCCEEEEEECTTTCCEEEEE
T ss_pred             cEEe-CCEEEEEECCCCeEEEEeCCCCcEEEEEECCCCcccccccccCcCCceEEEEEcCCCCEEEEeC
Confidence            7777 676666665788999999999887665432             113578999999877776554

>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}

Probab=99.04  E-value=1.3e-06  Score=74.11  Aligned_cols=232  Identities=10%  Similarity=0.027  Sum_probs=145.3

Q ss_pred             EEEeCCCCCEEEEeeCCCeEEEEECCCCceeEEeeCCcccEEEEEECCCCCeEEEEecCCCeEEEEecCCcceeeeecCC
Q 021247           65 SVAAHPSGIIAASASLDSFVRVFDVDTNASIATLEASPSEVWQMQFDPKGTTLAVAGGGSASVKLWDTATWNLIATLSIP  144 (315)
Q Consensus        65 ~~~~~~~g~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~  144 (315)
                      +....+.+.++++  ....|+..++........+. .......++|++.+..++++-...+.|..++.........+...
T Consensus        81 C~~~~~~~~l~~~--~~~~I~~i~~~~~~~~~~~~-~~~~~~gl~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~~~  157 (386)
T 3v65_B           81 CKALGPEPVLLFA--NRIDIRQVLPHRSEYTLLLN-NLENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVSTG  157 (386)
T ss_dssp             EEECSSCCEEEEE--CBSCEEEECTTSCCCEEEEC-SCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCEEEEECSS
T ss_pred             ECCccccceeEee--cCccceeeccCCCcEEEEec-CCCccEEEEEecCCCeEEEEeCCCCcEEEEecCCCCcEEEEeCC
Confidence            3344443433333  33568888887655433333 34567899999888888888777889999998765432222110


Q ss_pred             CCCCCCCCccCCCCcceEEEEECCCC-CEEEEecCCCcEEEEEcccceeeeeecCCccceEEEEEcCCCCcEEEEEeCC-
Q 021247          145 RPEGLKPTDKSSSKKFVLSVAWSPDG-RRIACGSMDGTISVFDVTRAKFLHHLEGHFMPVRSLVYSPVDPRVLFSASDD-  222 (315)
Q Consensus       145 ~~~~~~~~~~~~~~~~i~~~~~~~~~-~~l~~~s~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d-  222 (315)
                                   ......+++.+.+ +.+++-...+.|.+.++........+.......+.+++.|.++.++++-... 
T Consensus       158 -------------~~~p~glavd~~~g~lY~~d~~~~~I~~~~~dg~~~~~l~~~~l~~P~giavdp~~g~ly~td~~~~  224 (386)
T 3v65_B          158 -------------LESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKVLLWQSLEKPRAIALHPMEGTIYWTDWGNT  224 (386)
T ss_dssp             -------------CSCCCCEEEETTTTEEEEEETTTTEEEECBTTSCSCEEEECSSCSCEEEEEEETTTTEEEEEECSSS
T ss_pred             -------------CCCccEEEEEeCCCeEEEEcCCCCeEEEEeCCCCceEEeecCCCCCCcEEEEEcCCCeEEEeccCCC
Confidence                         0113468888754 4556666778899988864433333333345678999998777777776666 


Q ss_pred             CeEEEEeCCCCeeEEEeecccccEEEEEEcCCCCeE-EEEeCCCcEEEEecCccceehcccccccceEEEEEeeCCCEEE
Q 021247          223 THVHMYDAEGKSLVTAMSGHASWVLSVDASPDGAAI-TTGSSDRTVKLWDLNMRAAMQSMTNHTDQVWGVSFRPLGGRVV  301 (315)
Q Consensus       223 ~~i~~wd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l-~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~  301 (315)
                      +.|..+++.+..............+.++++|++..| ++-...+.|..++++.......+........++++ ..+..++
T Consensus       225 ~~I~r~~~dG~~~~~~~~~~~~~PnGlavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~~~~~~P~giav-~~~~ly~  303 (386)
T 3v65_B          225 PRIEASSMDGSGRRIIADTHLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGSHRKAVISQGLPHPFAITV-FEDSLYW  303 (386)
T ss_dssp             CEEEEEETTSCSCEEEECSSCSCEEEEEEEGGGTEEEEEETTTTEEEEECTTSCSCEEEECSSCSSEEEEEE-ETTEEEE
T ss_pred             CEEEEEeCCCCCcEEEEECCCCCeeeEEEeCCCCEEEEEECCCCEEEEEeCCCCeeEEEEECCCCCceEEEE-ECCEEEE
Confidence            889999987654443333445568899999865544 55556778999998643222222222345677888 3444445


Q ss_pred             EEeCCCcEEEee
Q 021247          302 SVSDDKSISLYE  313 (315)
Q Consensus       302 s~~~d~~i~i~~  313 (315)
                      +-...+.|..++
T Consensus       304 td~~~~~V~~~~  315 (386)
T 3v65_B          304 TDWHTKSINSAN  315 (386)
T ss_dssp             EETTTTEEEEEE
T ss_pred             eeCCCCeEEEEE
Confidence            555667777665

>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1

Probab=99.03  E-value=4.4e-06  Score=68.86  Aligned_cols=224  Identities=9%  Similarity=-0.010  Sum_probs=139.7

Q ss_pred             CcEEEEcCCCCcceeeccccccceEEEEeCCCC-CEEEEeeCCCeEEEEECCC----CceeEEeeCCcccEEEEEECCCC
Q 021247           40 ETVKLWRPDDMQLERTNTGHCLGVVSVAAHPSG-IIAASASLDSFVRVFDVDT----NASIATLEASPSEVWQMQFDPKG  114 (315)
Q Consensus        40 ~~v~~w~~~~~~~~~~~~~h~~~v~~~~~~~~g-~~l~s~~~d~~i~~w~~~~----~~~~~~~~~~~~~v~~~~~~~~~  114 (315)
                      ..|+..+++..+....... -..+..+.+++.+ .++++-...+.|+.+++..    ......+.........+++++.+
T Consensus        10 ~~I~~i~~~~~~~~~~~~~-~~~p~g~~~d~~~~~ly~~D~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~glavd~~~   88 (316)
T 1ijq_A           10 HEVRKMTLDRSEYTSLIPN-LRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIH   88 (316)
T ss_dssp             SSEEEEETTSCCCEEEECS-CSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEETTT
T ss_pred             CeEEEEECCCcceEehhcC-CCceEEEEEEeCCCEEEEEECCCCcEEEEECCCCCCCcccEEEEeCCCCCcCEEEEeecC
Confidence            5688888876655444332 3456788998754 5666666678999999876    22222232222345688888777


Q ss_pred             CeEEEEecCCCeEEEEecCCcceeeeecCCCCCCCCCCccCCCCcceEEEEECCCCCEE-EEecCC-CcEEEEEccccee
Q 021247          115 TTLAVAGGGSASVKLWDTATWNLIATLSIPRPEGLKPTDKSSSKKFVLSVAWSPDGRRI-ACGSMD-GTISVFDVTRAKF  192 (315)
Q Consensus       115 ~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l-~~~s~d-g~i~i~d~~~~~~  192 (315)
                      ..++++-...+.|.+.|.........+..             .......++++|.+..| ++.... +.|..+++.....
T Consensus        89 ~~ly~~d~~~~~I~~~~~~g~~~~~~~~~-------------~~~~P~~iavdp~~g~ly~~d~~~~~~I~~~~~dG~~~  155 (316)
T 1ijq_A           89 SNIYWTDSVLGTVSVADTKGVKRKTLFRE-------------NGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDI  155 (316)
T ss_dssp             TEEEEEETTTTEEEEEETTSSSEEEEEEC-------------TTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCE
T ss_pred             CeEEEEECCCCEEEEEeCCCCceEEEEEC-------------CCCCcceEEeCCCCCEEEEEccCCCCeEEEEcCCCCCe
Confidence            77777777788999999865332211110             01236789999865544 444333 6888888753322


Q ss_pred             eeeecCCccceEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCeeEEEee--cccccEEEEEEcCCCCeEEEEeCCCcEEEE
Q 021247          193 LHHLEGHFMPVRSLVYSPVDPRVLFSASDDTHVHMYDAEGKSLVTAMS--GHASWVLSVDASPDGAAITTGSSDRTVKLW  270 (315)
Q Consensus       193 ~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~--~~~~~i~~~~~~~~~~~l~s~~~d~~i~iw  270 (315)
                      .............++++|.+++++++-...+.|..+|..+........  ........+++. .+.++++-...+.|..+
T Consensus       156 ~~~~~~~~~~P~gla~d~~~~~lY~~D~~~~~I~~~d~dg~~~~~~~~~~~~~~~P~giav~-~~~ly~~d~~~~~V~~~  234 (316)
T 1ijq_A          156 YSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVF-EDKVFWTDIINEAIFSA  234 (316)
T ss_dssp             EEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEECTTTTSSEEEEEEE-TTEEEEEETTTTEEEEE
T ss_pred             EEEEECCCCCceEEEEeccCCEEEEEECCCCeEEEEecCCCceEEEeecCCccCCcEEEEEE-CCEEEEEECCCCeEEEE
Confidence            212222334578999998777777777788899999987643322222  123456778885 45666777778889988


Q ss_pred             ecCcccee
Q 021247          271 DLNMRAAM  278 (315)
Q Consensus       271 d~~~~~~~  278 (315)
                      +..+++..
T Consensus       235 ~~~~g~~~  242 (316)
T 1ijq_A          235 NRLTGSDV  242 (316)
T ss_dssp             ETTTCCCC
T ss_pred             eCCCCcce
Confidence            87655433

>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A

Probab=99.03  E-value=3.1e-08  Score=86.88  Aligned_cols=214  Identities=15%  Similarity=0.132  Sum_probs=141.4

Q ss_pred             EEEEeeCCCcEEEEcCCCCccee--eccccccceEEEEe-C-CCCCEEEEee------------------CCCeEEEEEC
Q 021247           32 LLLTGSLDETVKLWRPDDMQLER--TNTGHCLGVVSVAA-H-PSGIIAASAS------------------LDSFVRVFDV   89 (315)
Q Consensus        32 ~l~sgs~d~~v~~w~~~~~~~~~--~~~~h~~~v~~~~~-~-~~g~~l~s~~------------------~d~~i~~w~~   89 (315)
                      ++++...++.|.+.|++++++.+  .++. ...+..+.+ . |++.++++++                  .++.+-++|.
T Consensus       104 lfVnd~~~~rVavIdl~t~~~~~ii~ip~-g~~phg~~~~~~p~~~~v~~~~~~~~p~~~dg~~l~~~~~~~~~vtvID~  182 (595)
T 1fwx_A          104 LFMNDKANTRVARVRCDVMKCDAILEIPN-AKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANYVNVFTAVDA  182 (595)
T ss_dssp             EEEEETTTTEEEEEETTTTEEEEEEECSS-CCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGGGEEEEEEEEET
T ss_pred             EEEEcCCCCEEEEEECCCceEeeEEeCCC-CCCCcceeeeecCCCcEEEEecccccccCCCCcccccccccCceEEEEEC
Confidence            45555566789999999998766  3331 234667776 4 8999888874                  3457899999


Q ss_pred             CCCceeEEeeCCcccEEEEEECCCCCeEEEEecCC--------------CeEEEE-----------------------ec
Q 021247           90 DTNASIATLEASPSEVWQMQFDPKGTTLAVAGGGS--------------ASVKLW-----------------------DT  132 (315)
Q Consensus        90 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d--------------~~i~~~-----------------------d~  132 (315)
                      .+.+....+.... ....++.+|+++.+++++...              ..|.+.                       |.
T Consensus       183 ~t~~v~~qI~Vgg-~pd~~~~spdGk~~~vt~~~se~~~~i~~~~~~~~d~v~V~~~~~~~~~v~~Gk~~~i~~V~VID~  261 (595)
T 1fwx_A          183 DKWEVAWQVLVSG-NLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDYQELNGVKVVDG  261 (595)
T ss_dssp             TTTEEEEEEEESS-CCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTCSEEETTEEEEEC
T ss_pred             CCCeEEEEEEeCC-CccceEECCCCCEEEEEecCcccCcchhhccccccceEEEeeccceeEeccCCCeeEECcEEEEeC
Confidence            9888777766433 345677899999887776443              224444                       43


Q ss_pred             CC--cce-eeeecCCCCCCCCCCccCCCCcceEEEEECCCCCEEEEe-cCCCcEEEEEcccce------------eeeee
Q 021247          133 AT--WNL-IATLSIPRPEGLKPTDKSSSKKFVLSVAWSPDGRRIACG-SMDGTISVFDVTRAK------------FLHHL  196 (315)
Q Consensus       133 ~~--~~~-~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-s~dg~i~i~d~~~~~------------~~~~~  196 (315)
                      ++  ++. +..+..+              ....++.++|||++++++ ..+..|.++|+.+.+            ....+
T Consensus       262 ~~~~~~~~~~~Ipvg--------------~~PhGv~~sPDGk~v~V~~~~s~~VsVid~~~~~~~~~~~l~~~~~v~~~v  327 (595)
T 1fwx_A          262 RKEASSLFTRYIPIA--------------NNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAEP  327 (595)
T ss_dssp             SGGGCCSSEEEEEEE--------------SSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCCCGGGGEEECC
T ss_pred             cccCCceeEEEEecC--------------CCceEEEEcCCCCEEEEeCCCCCeEEEEECcccccccccccCcccceEEEc
Confidence            33  111 1122111              113479999999987654 577899999998653            22333


Q ss_pred             cCCccceEEEEEcCCCCcEEEEEeCCCeEEEEeCCC----------CeeEEEeeccccc-----EEEEEEcCCCCeEEEE
Q 021247          197 EGHFMPVRSLVYSPVDPRVLFSASDDTHVHMYDAEG----------KSLVTAMSGHASW-----VLSVDASPDGAAITTG  261 (315)
Q Consensus       197 ~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~----------~~~~~~~~~~~~~-----i~~~~~~~~~~~l~s~  261 (315)
                      ... ...+.++|+|++ ...++...|+.|.+||+..          .+.+..+..|..+     -..+..+|||++|++.
T Consensus       328 ~vG-~gP~h~aF~~dG-~aY~t~~ldsqV~kwdi~~a~~~~~g~~~~~vi~kidV~yqpGh~~~~~g~t~~~DGk~l~~~  405 (595)
T 1fwx_A          328 ELG-LGPLHTAFDGRG-NAYTSLFLDSQVVKWNIEDAIRAYAGEKVDPIKDKLDVHYQPGHLKTVMGETLDATNDWLVCL  405 (595)
T ss_dssp             BCC-SCEEEEEECTTS-EEEEEETTTTEEEEEEHHHHHHHHHTCSCCCEEEEEECSSCEEEEEETTTTSTTCCSSEEEEE
T ss_pred             CCC-CCcceEEECCCC-eEEEEEecCCcEEEEEhhHhhhhhcccccceeEEEeecccccccceeccceEeCCCCCEEEEc
Confidence            322 346889999955 7777888899999999865          4566666555332     1233568999999887


Q ss_pred             eC
Q 021247          262 SS  263 (315)
Q Consensus       262 ~~  263 (315)
                      ..
T Consensus       406 Nk  407 (595)
T 1fwx_A          406 SK  407 (595)
T ss_dssp             ES
T ss_pred             CC
Confidence            55

>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*

Probab=99.02  E-value=1.2e-05  Score=74.85  Aligned_cols=277  Identities=11%  Similarity=0.122  Sum_probs=171.1

Q ss_pred             eEEEEEeecCCCCCcEEEEeeCCCcEEEEcCCCCcceeec-cccccceEEEEeCCCCCEEEEeeCCCeEEEEECCCCcee
Q 021247           17 VWAVTWVPATETRPALLLTGSLDETVKLWRPDDMQLERTN-TGHCLGVVSVAAHPSGIIAASASLDSFVRVFDVDTNASI   95 (315)
Q Consensus        17 v~~v~~~~~~~~~~~~l~sgs~d~~v~~w~~~~~~~~~~~-~~h~~~v~~~~~~~~g~~l~s~~~d~~i~~w~~~~~~~~   95 (315)
                      |.++...+.+     .+..|..++-|..|+..+.+..... ..+...|.++...++|.+.+. +.++.+..||..+++..
T Consensus       175 i~~i~~d~~g-----~lwigt~~~Gl~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~lwig-t~~~Gl~~~~~~~~~~~  248 (795)
T 4a2l_A          175 IASTLYRQGD-----QIYIGTSTDGLYTYSITQKTFEKVIPILGTKQIQAILQQSPTRIWVA-TEGAGLFLINPKTKEIK  248 (795)
T ss_dssp             CEEEEEEETT-----EEEEEESSSCEEEEETTTCCEEECC----CCCEEEEEEEETTEEEEE-EBSSCEEEEETTTTEEE
T ss_pred             eEEEEECCCC-----CEEEEECCCCEEEEeCCCCeEEEecCCCCCCeeEEEEEcCCCCEEEE-ECCCCeEEEeCCCCeEE
Confidence            7777665543     3666777666888987766543321 123456888888888876654 44444888998776543


Q ss_pred             EEeeC-------CcccEEEEEECCCCCeEEEEecCCCeEEEEecCCcceeeeecCCCCCCCCCCccCCCCcceEEEEECC
Q 021247           96 ATLEA-------SPSEVWQMQFDPKGTTLAVAGGGSASVKLWDTATWNLIATLSIPRPEGLKPTDKSSSKKFVLSVAWSP  168 (315)
Q Consensus        96 ~~~~~-------~~~~v~~~~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~  168 (315)
                      .....       ....|.++..++++...+  |... -|.+||..+.+.......+..      ........|.++...+
T Consensus       249 ~~~~~~~~~~~l~~~~i~~i~~d~~g~lWi--gt~~-Gl~~~~~~~~~~~~~~~~~~~------~~~l~~~~i~~i~~D~  319 (795)
T 4a2l_A          249 NYLHSPSNPKSISSNYIRSLAMDSQNRLWI--GTFN-DLNIYHEGTDSFASYSSNPVE------NGSLSQRSVRSIFMDS  319 (795)
T ss_dssp             EECCCTTCTTSCSCSBEEEEEECTTSCEEE--EESS-CEEEEETTTTEEEEECCCTTS------TTSCSSSCEEEEEECT
T ss_pred             EeecCCCCccccCCCeEEEEEEcCCCCEEE--EeCC-hhheEcCCCCeEEEEecCCCC------CCCCCCCcEEEEEEeC
Confidence            22211       135689999888887543  3334 688899876543322111100      0112234589999988


Q ss_pred             CCCEEEEecCCCcEEEEEcccceeeeeec------CCccceEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCeeEEEeec-
Q 021247          169 DGRRIACGSMDGTISVFDVTRAKFLHHLE------GHFMPVRSLVYSPVDPRVLFSASDDTHVHMYDAEGKSLVTAMSG-  241 (315)
Q Consensus       169 ~~~~l~~~s~dg~i~i~d~~~~~~~~~~~------~~~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~-  241 (315)
                      +|. |..|+.++.|..++..+........      .....|.++...+ ++ .|..|+.++-|..||.+++........ 
T Consensus       320 ~g~-lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~l~~~~V~~i~~d~-~g-~lWiGt~~~Gl~~~~~~~~~~~~~~~~~  396 (795)
T 4a2l_A          320 QGG-MWLGTYFGGLNYYHPIRNRFKNIRNIPYKNSLSDNVVSCIVEDK-DK-NLWIGTNDGGLNLYNPITQRFTSYTLQE  396 (795)
T ss_dssp             TSC-EEEEESSSCEEEECGGGGSSEEECCCTTSSSCSCSSEEEEEECT-TS-CEEEEESSSCEEEECTTTCCEEEECCC-
T ss_pred             CcC-EEEEECCCCeEEeCCCcccceEEcCCCCCCCCCCCeeEEEEECC-CC-CEEEEECCCCeEEEcCCCCcEEEEecCC
Confidence            876 5567777889999876654322111      1234688888765 33 455677777799999887655433211 


Q ss_pred             -------ccccEEEEEEcCCCCeEEEEeCCCcEEEEecCccceehccc----ccccceEEEEEeeCCCEEEEEeCCCcEE
Q 021247          242 -------HASWVLSVDASPDGAAITTGSSDRTVKLWDLNMRAAMQSMT----NHTDQVWGVSFRPLGGRVVSVSDDKSIS  310 (315)
Q Consensus       242 -------~~~~i~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~----~~~~~v~~~~~s~~~~~l~s~~~d~~i~  310 (315)
                             ....|.++..+++++.|..|+.++-+..+|..+++...-..    .....|.++...++|...+... + -+.
T Consensus       397 ~~~~~~l~~~~v~~i~~d~~g~~lWigt~~~Gl~~~d~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~lwigt~-~-Gl~  474 (795)
T 4a2l_A          397 DESARGIGSNNIKAVYVDEKKSLVYIGTHAGGLSILHRNSGQVENFNQRNSQLVNENVYAILPDGEGNLWLGTL-S-ALV  474 (795)
T ss_dssp             -----CCSCSCEEEEEEETTTTEEEEEETTTEEEEEETTTCCEEEECTTTSCCSCSCEEEEEECSSSCEEEEES-S-CEE
T ss_pred             CCcccCCCCccEEEEEEcCCCCEEEEEeCcCceeEEeCCCCcEEEeecCCCCcCCCeeEEEEECCCCCEEEEec-C-cee
Confidence                   13568899998888856667777779999987654332111    2345788999888887655543 3 466


Q ss_pred             Eee
Q 021247          311 LYE  313 (315)
Q Consensus       311 i~~  313 (315)
                      +|+
T Consensus       475 ~~~  477 (795)
T 4a2l_A          475 RFN  477 (795)
T ss_dssp             EEE
T ss_pred             EEe
Confidence            665

>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A

Probab=99.01  E-value=5.6e-08  Score=88.57  Aligned_cols=264  Identities=11%  Similarity=0.087  Sum_probs=142.8

Q ss_pred             EEEEeeCCC-----------cEEEEcCCCCcceee--c-cccccceEEEEeCCCCCEEEEeeC-CCeEEEEECCCCceeE
Q 021247           32 LLLTGSLDE-----------TVKLWRPDDMQLERT--N-TGHCLGVVSVAAHPSGIIAASASL-DSFVRVFDVDTNASIA   96 (315)
Q Consensus        32 ~l~sgs~d~-----------~v~~w~~~~~~~~~~--~-~~h~~~v~~~~~~~~g~~l~s~~~-d~~i~~w~~~~~~~~~   96 (315)
                      +++.|+.+.           .+.+||+.+.+-...  . ..+.....++.+..+|.+++.|+. +..+++||..+++-..
T Consensus       200 l~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~~~g~lyv~GG~~~~~v~~yd~~t~~W~~  279 (656)
T 1k3i_A          200 VLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKHDMFCPGISMDGNGQIVVTGGNDAKKTSLYDSSSDSWIP  279 (656)
T ss_dssp             EEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECSCCCSSCEEEECTTSCEEEECSSSTTCEEEEEGGGTEEEE
T ss_pred             EEEEecccccccccCCCCeEEEEEEeCCCCcEEeCcccCCCCCCccccccCCCCCCEEEeCCCCCCceEEecCcCCceeE
Confidence            677776543           578899876653222  1 112223335667789999999884 4689999998765433


Q ss_pred             EeeCCcc-cEEEEEECCCCCeEEEEec-CC-----CeEEEEecCCcceeeeecCCCCCCCCCCccCCCCcceEEEEECCC
Q 021247           97 TLEASPS-EVWQMQFDPKGTTLAVAGG-GS-----ASVKLWDTATWNLIATLSIPRPEGLKPTDKSSSKKFVLSVAWSPD  169 (315)
Q Consensus        97 ~~~~~~~-~v~~~~~~~~~~~~~~~~~-~d-----~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~  169 (315)
                      .-..... .-..+...++++.+ +.|+ .+     ..+.+||..+.+....-...    ..+.....+.     ..+..+
T Consensus       280 ~~~~~~~R~~~s~~~~~dg~iy-v~GG~~~~~~~~~~~e~yd~~t~~W~~~~~~~----~~p~~~~~~~-----~~~~~~  349 (656)
T 1k3i_A          280 GPDMQVARGYQSSATMSDGRVF-TIGGSWSGGVFEKNGEVYSPSSKTWTSLPNAK----VNPMLTADKQ-----GLYRSD  349 (656)
T ss_dssp             CCCCSSCCSSCEEEECTTSCEE-EECCCCCSSSCCCCEEEEETTTTEEEEETTSC----SGGGCCCCTT-----GGGTTT
T ss_pred             CCCCCccccccceEEecCCeEE-EEeCcccCCcccccceEeCCCCCcceeCCCcc----cccccccccc-----ceeecC
Confidence            2111111 11234455666644 5555 33     56899999875543221000    0000000000     011223


Q ss_pred             CCEEEEecCC---------CcEEEEEcccceeeeeecCCcc---------ceEEEEEcCCCCcEEEEEeCCC--------
Q 021247          170 GRRIACGSMD---------GTISVFDVTRAKFLHHLEGHFM---------PVRSLVYSPVDPRVLFSASDDT--------  223 (315)
Q Consensus       170 ~~~l~~~s~d---------g~i~i~d~~~~~~~~~~~~~~~---------~v~~~~~~~~~~~~l~s~~~d~--------  223 (315)
                      ++.++.|+.+         ..+..||..+.........+..         .-.++.|...++++++.|+.+.        
T Consensus       350 ~~iyv~Gg~~g~~~~~~~~~~v~~yd~~~~~w~~~~~~~~~~~~~~~~~~~~~av~~~~~~~~i~v~GG~~~~~~~~~~~  429 (656)
T 1k3i_A          350 NHAWLFGWKKGSVFQAGPSTAMNWYYTSGSGDVKSAGKRQSNRGVAPDAMCGNAVMYDAVKGKILTFGGSPDYQDSDATT  429 (656)
T ss_dssp             CSCCEEECGGGCEEECCSSSEEEEEECSTTCEEEEEEECEETTEECCCCBTCEEEEEETTTTEEEEECCBSSSSSSBCCC
T ss_pred             CceEEEECCCCcEEEecCccceeeeecCCcceeecCCccccccccCCCCCCCceEeccCCCCeEEEEeCCCCCCCCCcCC
Confidence            3443444333         3578888877664433322211         2244555445778888888543        


Q ss_pred             ---eEEEEeCCCCeeEEEe--ecccccE-EEEEEcCCCCeEEEEeCC-----------CcEEEEecCccc--eehccccc
Q 021247          224 ---HVHMYDAEGKSLVTAM--SGHASWV-LSVDASPDGAAITTGSSD-----------RTVKLWDLNMRA--AMQSMTNH  284 (315)
Q Consensus       224 ---~i~~wd~~~~~~~~~~--~~~~~~i-~~~~~~~~~~~l~s~~~d-----------~~i~iwd~~~~~--~~~~~~~~  284 (315)
                         .+.+||....+-....  .-..... .+....|++++++.|+.+           ..+.+||..+.+  .+..+...
T Consensus       430 ~~~~v~~yd~~~~~W~~~~~~~mp~~R~~~~~~~l~~g~i~v~GG~~~~~~~~~~~~~~~v~~ydp~t~~W~~~~~~~~~  509 (656)
T 1k3i_A          430 NAHIITLGEPGTSPNTVFASNGLYFARTFHTSVVLPDGSTFITGGQRRGIPFEDSTPVFTPEIYVPEQDTFYKQNPNSIV  509 (656)
T ss_dssp             CEEEEECCSTTSCCEEEECTTCCSSCCBSCEEEECTTSCEEEECCBSBCCTTCCCSBCCCCEEEEGGGTEEEECCCCSSC
T ss_pred             cceEEEcCCCCCCCeeEEccCCCCCCcccCCeEECCCCCEEEECCcccCcCcCCCCcccceEEEcCCCCceeecCCCCCc
Confidence               6788888765433221  1111111 234566899999999865           468899987643  22222222


Q ss_pred             ccceEEEEEeeCCCEEEEEeC
Q 021247          285 TDQVWGVSFRPLGGRVVSVSD  305 (315)
Q Consensus       285 ~~~v~~~~~s~~~~~l~s~~~  305 (315)
                      ......+.+.|+|+.++.||.
T Consensus       510 R~~hs~a~ll~dg~v~v~GG~  530 (656)
T 1k3i_A          510 RVYHSISLLLPDGRVFNGGGG  530 (656)
T ss_dssp             CCTTEEEEECTTSCEEEEECC
T ss_pred             cccccHhhcCCCcEEEecCCC
Confidence            222234556789999898885

>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L

Probab=99.00  E-value=8.4e-06  Score=69.51  Aligned_cols=234  Identities=9%  Similarity=0.003  Sum_probs=148.5

Q ss_pred             EEEEeeCCCcEEEEcCCCCcceeeccccccceEEEEeCCC-CCEEEEeeCCCeEEEEECCCC----ceeEEeeCCcccEE
Q 021247           32 LLLTGSLDETVKLWRPDDMQLERTNTGHCLGVVSVAAHPS-GIIAASASLDSFVRVFDVDTN----ASIATLEASPSEVW  106 (315)
Q Consensus        32 ~l~sgs~d~~v~~w~~~~~~~~~~~~~h~~~v~~~~~~~~-g~~l~s~~~d~~i~~w~~~~~----~~~~~~~~~~~~v~  106 (315)
                      +|+.+. ...|+..+++......... .-..+..+++++. +.++++-...+.|+.+++...    .....+........
T Consensus        85 ~ll~~~-~~~I~~i~l~~~~~~~~~~-~~~~~~~l~~d~~~~~lywsD~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~  162 (400)
T 3p5b_L           85 YLFFTN-RHEVRKMTLDRSEYTSLIP-NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPD  162 (400)
T ss_dssp             EEEEEE-TTEEEEECTTSCSCEEEEC-SCSCEEEEEEETTTTEEEEEETTTTEEEEEEC------CCCEEEECSSCSCEE
T ss_pred             eeEEec-cceeEEEccCCcceeEecc-ccCcceEEeeeeccCceEEEecCCCeEEEEEcccCCCCCcceEEEeCCCCCcc
Confidence            444433 4678888887655444333 3346788999975 456666666788999998752    22333333445677


Q ss_pred             EEEECCCCCeEEEEecCCCeEEEEecCCcceeeeecCCCCCCCCCCccCCCCcceEEEEECCCCCEEE-Eec-CCCcEEE
Q 021247          107 QMQFDPKGTTLAVAGGGSASVKLWDTATWNLIATLSIPRPEGLKPTDKSSSKKFVLSVAWSPDGRRIA-CGS-MDGTISV  184 (315)
Q Consensus       107 ~~~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~-~~s-~dg~i~i  184 (315)
                      .+++++.+..++++-...+.|.+.++........+..             .......++++|.+..|+ +-. ..+.|..
T Consensus       163 glavD~~~~~lY~~d~~~~~I~~~~~~g~~~~~l~~~-------------~~~~P~~iavdp~~g~ly~td~~~~~~I~~  229 (400)
T 3p5b_L          163 GLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRE-------------NGSKPRAIVVDPVHGFMYWTDWGTPAKIKK  229 (400)
T ss_dssp             EEEEETTTTEEEEEETTTTEEEEECTTTCSEEEEEEC-------------SSCCEEEEEEETTTTEEEEEECSSSCCEEE
T ss_pred             cEEEEecCCceEEEECCCCeEEEEeCCCCceEEEEeC-------------CCCCcceEEEecccCeEEEEeCCCCCEEEE
Confidence            8999987777888877788999998875433222210             112267899999655554 432 3478988


Q ss_pred             EEcccceeeeeecCCccceEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCeeEEEeec--ccccEEEEEEcCCCCeEEEEe
Q 021247          185 FDVTRAKFLHHLEGHFMPVRSLVYSPVDPRVLFSASDDTHVHMYDAEGKSLVTAMSG--HASWVLSVDASPDGAAITTGS  262 (315)
Q Consensus       185 ~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~--~~~~i~~~~~~~~~~~l~s~~  262 (315)
                      .++........+.........++++|.+++++++-...+.|..+|+.+.........  ......++++. .+.++++..
T Consensus       230 ~~~dG~~~~~~~~~~l~~P~glavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~~~~~l~~P~gl~v~-~~~lywtd~  308 (400)
T 3p5b_L          230 GGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVF-EDKVFWTDI  308 (400)
T ss_dssp             EETTSCSCEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCCEEEEECSSTTSSEEEEEEE-TTEEEEEES
T ss_pred             EeCCCCccEEEEECCCCceEEEEEEeCCCEEEEEECCCCEEEEEeCCCCccEEEEeCCCCCCCCEEEEEe-CCEEEEecC
Confidence            888644333223333346789999987777777777788999999876544333332  23456677774 445667777


Q ss_pred             CCCcEEEEecCccceehcc
Q 021247          263 SDRTVKLWDLNMRAAMQSM  281 (315)
Q Consensus       263 ~d~~i~iwd~~~~~~~~~~  281 (315)
                      ..+.|..++..+++.+..+
T Consensus       309 ~~~~V~~~~~~~G~~~~~i  327 (400)
T 3p5b_L          309 INEAIFSANRLTGSDVNLL  327 (400)
T ss_dssp             SSCSEEEEESSSCCCCEEE
T ss_pred             CCCeEEEEEcCCCCceEEE
Confidence            7888999986666554444

>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*

Probab=98.98  E-value=5.2e-07  Score=80.59  Aligned_cols=279  Identities=15%  Similarity=0.065  Sum_probs=162.5

Q ss_pred             cEEEEeeC-CCcEEEEcC-CCCcceeecccccc-c---------e-EEEEeCCCCCEEEEeeCCCeEEEEECCCCceeEE
Q 021247           31 ALLLTGSL-DETVKLWRP-DDMQLERTNTGHCL-G---------V-VSVAAHPSGIIAASASLDSFVRVFDVDTNASIAT   97 (315)
Q Consensus        31 ~~l~sgs~-d~~v~~w~~-~~~~~~~~~~~h~~-~---------v-~~~~~~~~g~~l~s~~~d~~i~~w~~~~~~~~~~   97 (315)
                      ..++.++. ++.|.-+|. .+++.......... .         + ..+.+  .+..++.++.|+.+..+|..+++.+..
T Consensus        63 g~vyv~~~~~~~v~AlD~~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~v~v~~~dg~l~alD~~tG~~~W~  140 (571)
T 2ad6_A           63 DMMYVHSAFPNNTYALNLNDPGKIVWQHKPKQDASTKAVMCCDVVDRGLAY--GAGQIVKKQANGHLLALDAKTGKINWE  140 (571)
T ss_dssp             TEEEEECSTTTCEEEEETTCTTSEEEEECCCCCGGGGGGCTTCSCCCCCEE--ETTEEEEECTTSEEEEEETTTCCEEEE
T ss_pred             CEEEEEeCCCCEEEEEeCCCCccEEEEEcCCCCccccccccccccccccEE--ECCEEEEEeCCCEEEEEECCCCCEEEE
Confidence            35677777 899999998 78877654321110 0         0 01111  245667778899999999999998876


Q ss_pred             eeCCccc-EEEEEECC--CCCeEEEEecC-----CCeEEEEecCCcceeeeecCCCCCC---CCCCc-------------
Q 021247           98 LEASPSE-VWQMQFDP--KGTTLAVAGGG-----SASVKLWDTATWNLIATLSIPRPEG---LKPTD-------------  153 (315)
Q Consensus        98 ~~~~~~~-v~~~~~~~--~~~~~~~~~~~-----d~~i~~~d~~~~~~~~~~~~~~~~~---~~~~~-------------  153 (315)
                      ....... -..+.-.|  .+..+++....     ++.|..+|.++++.+.++....+..   ..+..             
T Consensus       141 ~~~~~~~~~~~~~~~P~v~~g~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~~~~~~~p~~~~~~~~~G~~~~g  220 (571)
T 2ad6_A          141 VEVCDPKVGSTLTQAPFVAKDTVLMGCSGAELGVRGAVNAFDLKTGELKWRAFATGSDDSVRLAKDFNSANPHYGQFGLG  220 (571)
T ss_dssp             EECCCGGGTCBCCSCCEEETTEEEEECBCGGGTCCCEEEEEETTTCCEEEEEESSSCHHHHTBCTTTTTTCGGGCCSSHH
T ss_pred             ecCCCCCccceeccCCEEECCEEEEEecCCccCCCCEEEEEECCCCcEEEEEccCCCccccccCcccccccccccccccc
Confidence            6532200 00000011  12345444332     7899999999999988776432210   00000             


Q ss_pred             ---------cCCCCcceEEEEECCCCCEEEEecCC----------------CcEEEEEcccceeeeeecC--C-------
Q 021247          154 ---------KSSSKKFVLSVAWSPDGRRIACGSMD----------------GTISVFDVTRAKFLHHLEG--H-------  199 (315)
Q Consensus       154 ---------~~~~~~~i~~~~~~~~~~~l~~~s~d----------------g~i~i~d~~~~~~~~~~~~--~-------  199 (315)
                               .......-..+++.++...++.++.+                +.|..+|..+++.+-....  |       
T Consensus       221 ~~~w~~~~~~~gg~~~w~~~a~d~~~g~vy~~~g~~~~~~~~~~~gd~~y~~~v~Ald~~tG~~~W~~~~~~~d~~d~~~  300 (571)
T 2ad6_A          221 TKTWEGDAWKIGGGTNWGWYAYDPKLNLFYYGSGNPAPWNETMRPGDNKWTMTIWGRDLDTGMAKWGYQKTPHDEWDFAG  300 (571)
T ss_dssp             HHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTTTEEEEEETTTCCEEEEEESSTTCSSCCCC
T ss_pred             cccCcccceecCCCCeeeeEEEcCCCCeEEEECCCCccccCCccCCCceeEEEEEEEecCCCcEEEEecCCCCccccccc
Confidence                     00000001235666766666655432                3599999999887654432  2       


Q ss_pred             -ccceEEEEEcCCCC---cEEEEEeCCCeEEEEeCCCCeeEEEeeccc-------------ccE----------------
Q 021247          200 -FMPVRSLVYSPVDP---RVLFSASDDTHVHMYDAEGKSLVTAMSGHA-------------SWV----------------  246 (315)
Q Consensus       200 -~~~v~~~~~~~~~~---~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~-------------~~i----------------  246 (315)
                       ..++. +...+ ++   ++++.++.+|.++++|.++++++-...-..             .++                
T Consensus       301 ~~~p~l-~~~~~-~G~~~~~v~~~~~~G~l~~lD~~tG~~~w~~~~~~~~~w~~~~d~~~g~p~~~~~~~~~~~~~~~~~  378 (571)
T 2ad6_A          301 VNQMVL-TDQPV-NGKMTPLLSHIDRNGILYTLNRENGNLIVAEKVDPAVNVFKKVDLKTGTPVRDPEFATRMDHKGTNI  378 (571)
T ss_dssp             CCCCEE-EEEEE-TTEEEEEEEEECTTSEEEEEETTTCCEEEEEESSTTCCSEEEECTTTCSEEECGGGCCCTTCCEEEE
T ss_pred             CCCCEE-Eeccc-CCcEEEEEEEeCCCcEEEEEECCCCCEEeeecccCCccccccccccCCceecccccCCCCCCCceEE
Confidence             12221 22212 34   367788899999999999887765443111             011                


Q ss_pred             ----------EEEEEcCCCCeEEEEe-------------------------------------CCCcEEEEecCccceeh
Q 021247          247 ----------LSVDASPDGAAITTGS-------------------------------------SDRTVKLWDLNMRAAMQ  279 (315)
Q Consensus       247 ----------~~~~~~~~~~~l~s~~-------------------------------------~d~~i~iwd~~~~~~~~  279 (315)
                                ..++++|+..+|+...                                     .++.|..||+.+++.+-
T Consensus       379 ~P~~~Gg~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~g~l~a~D~~tG~~~W  458 (571)
T 2ad6_A          379 CPSAMGFHNQGVDSYDPESRTLYAGLNHICMDWEPFMLPYRAGQFFVGATLAMYPGPNGPTKKEMGQIRAFDLTTGKAKW  458 (571)
T ss_dssp             SSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEECTTSTTSCCCEEEEEECTTTCCEEE
T ss_pred             CCCCccccCCCCceECCCCCEEEEEchhccccccccccccccCCccccccceeccCccccCCCCCCeEEEEECCCCCEEE
Confidence                      1346777766665543                                     35789999998887654


Q ss_pred             cccccccceEEEEEeeCCCEEEEEeCCCcEEEeec
Q 021247          280 SMTNHTDQVWGVSFRPLGGRVVSVSDDKSISLYEY  314 (315)
Q Consensus       280 ~~~~~~~~v~~~~~s~~~~~l~s~~~d~~i~i~~~  314 (315)
                      +... ...+.+..+...+..++.++.|+.|+.||.
T Consensus       459 ~~~~-~~~~~~~~~~t~gg~v~~g~~dg~l~a~D~  492 (571)
T 2ad6_A          459 TKWE-KFAAWGGTLYTKGGLVWYATLDGYLKALDN  492 (571)
T ss_dssp             EEEE-SSCCCSBCEEETTTEEEEECTTSEEEEEET
T ss_pred             EecC-CCCccceeEEECCCEEEEEcCCCeEEEEEC
Confidence            4332 223333344556778888999999999984

>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*

Probab=98.98  E-value=3.9e-07  Score=81.38  Aligned_cols=267  Identities=10%  Similarity=0.046  Sum_probs=154.1

Q ss_pred             cEEEEeeCCCcEEEEcCCCCcceeecc--cccc--ceEEEEeCCCCCEEEEeeC-----CCeEEEEECCCCceeEEeeCC
Q 021247           31 ALLLTGSLDETVKLWRPDDMQLERTNT--GHCL--GVVSVAAHPSGIIAASASL-----DSFVRVFDVDTNASIATLEAS  101 (315)
Q Consensus        31 ~~l~sgs~d~~v~~w~~~~~~~~~~~~--~h~~--~v~~~~~~~~g~~l~s~~~-----d~~i~~w~~~~~~~~~~~~~~  101 (315)
                      ..++.++.|+.|..+|..+++......  .+..  .+.+-..-.++.+++..+.     ++.|+.+|..+++.+..+...
T Consensus       116 ~~v~v~~~dg~l~alD~~tG~~~W~~~~~~~~~~~~~~~~P~v~~g~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~  195 (571)
T 2ad6_A          116 GQIVKKQANGHLLALDAKTGKINWEVEVCDPKVGSTLTQAPFVAKDTVLMGCSGAELGVRGAVNAFDLKTGELKWRAFAT  195 (571)
T ss_dssp             TEEEEECTTSEEEEEETTTCCEEEEEECCCGGGTCBCCSCCEEETTEEEEECBCGGGTCCCEEEEEETTTCCEEEEEESS
T ss_pred             CEEEEEeCCCEEEEEECCCCCEEEEecCCCCCccceeccCCEEECCEEEEEecCCccCCCCEEEEEECCCCcEEEEEccC
Confidence            368888899999999998888765432  2111  1111000014544443332     799999999999988776543


Q ss_pred             ccc-------------------------------------E-EEEEECCCCCeEEEEecC-----------C----CeEE
Q 021247          102 PSE-------------------------------------V-WQMQFDPKGTTLAVAGGG-----------S----ASVK  128 (315)
Q Consensus       102 ~~~-------------------------------------v-~~~~~~~~~~~~~~~~~~-----------d----~~i~  128 (315)
                      ...                                     + ..+++++....+++..+.           +    +.|.
T Consensus       196 ~~~~~~~~~p~~~~~~~~~G~~~~g~~~w~~~~~~~gg~~~w~~~a~d~~~g~vy~~~g~~~~~~~~~~~gd~~y~~~v~  275 (571)
T 2ad6_A          196 GSDDSVRLAKDFNSANPHYGQFGLGTKTWEGDAWKIGGGTNWGWYAYDPKLNLFYYGSGNPAPWNETMRPGDNKWTMTIW  275 (571)
T ss_dssp             SCHHHHTBCTTTTTTCGGGCCSSHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTTTEEE
T ss_pred             CCccccccCcccccccccccccccccccCcccceecCCCCeeeeEEEcCCCCeEEEECCCCccccCCccCCCceeEEEEE
Confidence            211                                     0 124566666655554321           1    3699


Q ss_pred             EEecCCcceeeeecCCCCCCCCCCccCCCCcceEEEEECCCCC---EEEEecCCCcEEEEEcccceeeeeecCCc-----
Q 021247          129 LWDTATWNLIATLSIPRPEGLKPTDKSSSKKFVLSVAWSPDGR---RIACGSMDGTISVFDVTRAKFLHHLEGHF-----  200 (315)
Q Consensus       129 ~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~---~l~~~s~dg~i~i~d~~~~~~~~~~~~~~-----  200 (315)
                      .+|.++++.+..+........   .......++. +....+|+   .++.++.+|.++++|..+++.+-......     
T Consensus       276 Ald~~tG~~~W~~~~~~~d~~---d~~~~~~p~l-~~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~~w~~~~~~~~~w~  351 (571)
T 2ad6_A          276 GRDLDTGMAKWGYQKTPHDEW---DFAGVNQMVL-TDQPVNGKMTPLLSHIDRNGILYTLNRENGNLIVAEKVDPAVNVF  351 (571)
T ss_dssp             EEETTTCCEEEEEESSTTCSS---CCCCCCCCEE-EEEEETTEEEEEEEEECTTSEEEEEETTTCCEEEEEESSTTCCSE
T ss_pred             EEecCCCcEEEEecCCCCccc---ccccCCCCEE-EecccCCcEEEEEEEeCCCcEEEEEECCCCCEEeeecccCCcccc
Confidence            999999999888765321100   0000111121 22224674   56778899999999999988765433211     


Q ss_pred             --------cce--------------------------EEEEEcCCCCcEEEEE---------------------------
Q 021247          201 --------MPV--------------------------RSLVYSPVDPRVLFSA---------------------------  219 (315)
Q Consensus       201 --------~~v--------------------------~~~~~~~~~~~~l~s~---------------------------  219 (315)
                              .++                          ..++++|..+.+++..                           
T Consensus       352 ~~~d~~~g~p~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~  431 (571)
T 2ad6_A          352 KKVDLKTGTPVRDPEFATRMDHKGTNICPSAMGFHNQGVDSYDPESRTLYAGLNHICMDWEPFMLPYRAGQFFVGATLAM  431 (571)
T ss_dssp             EEECTTTCSEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEECCCCCCTTSCCCCEEEEE
T ss_pred             ccccccCCceecccccCCCCCCCceEECCCCccccCCCCceECCCCCEEEEEchhccccccccccccccCCcccccccee
Confidence                    111                          1345666444333332                           


Q ss_pred             ---------eCCCeEEEEeCCCCeeEEEeecccccEEEEEEcCCCCeEEEEeCCCcEEEEecCccceehccccccc-ceE
Q 021247          220 ---------SDDTHVHMYDAEGKSLVTAMSGHASWVLSVDASPDGAAITTGSSDRTVKLWDLNMRAAMQSMTNHTD-QVW  289 (315)
Q Consensus       220 ---------~~d~~i~~wd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~-~v~  289 (315)
                               ..++.|..||..+++.+-..... ..+....+...+..++.++.|+.|+.||.++++.+-++..... .-.
T Consensus       432 ~~~~~~~~~~~~g~l~a~D~~tG~~~W~~~~~-~~~~~~~~~t~gg~v~~g~~dg~l~a~D~~tG~~lw~~~~~~~~~~~  510 (571)
T 2ad6_A          432 YPGPNGPTKKEMGQIRAFDLTTGKAKWTKWEK-FAAWGGTLYTKGGLVWYATLDGYLKALDNKDGKELWNFKMPSGGIGS  510 (571)
T ss_dssp             EECTTSTTSCCCEEEEEECTTTCCEEEEEEES-SCCCSBCEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSC
T ss_pred             ccCccccCCCCCCeEEEEECCCCCEEEEecCC-CCccceeEEECCCEEEEEcCCCeEEEEECCCCCEEEEEeCCCCcEee
Confidence                     13578999999888766544322 1122222233456777799999999999999988766543221 112


Q ss_pred             EEEEeeCCCEEEE
Q 021247          290 GVSFRPLGGRVVS  302 (315)
Q Consensus       290 ~~~~s~~~~~l~s  302 (315)
                      -+.+..+|+.++.
T Consensus       511 p~~~~~~G~~yv~  523 (571)
T 2ad6_A          511 PMTYSFKGKQYIG  523 (571)
T ss_dssp             CEEEEETTEEEEE
T ss_pred             eEEEEECCEEEEE
Confidence            2346677765443

>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B

Probab=98.94  E-value=4.5e-06  Score=68.81  Aligned_cols=226  Identities=9%  Similarity=0.032  Sum_probs=141.7

Q ss_pred             CCcEEEEcCCCCccee-eccccccceEEEEeCCC-CCEEEEeeCCCeEEEEECCCCcee-EEeeCCcccEEEEEECCCCC
Q 021247           39 DETVKLWRPDDMQLER-TNTGHCLGVVSVAAHPS-GIIAASASLDSFVRVFDVDTNASI-ATLEASPSEVWQMQFDPKGT  115 (315)
Q Consensus        39 d~~v~~w~~~~~~~~~-~~~~h~~~v~~~~~~~~-g~~l~s~~~d~~i~~w~~~~~~~~-~~~~~~~~~v~~~~~~~~~~  115 (315)
                      ...|+..+++...... .....-..+..+.|++. +.++++-...+.|+.+++...... ..+.........+++++.+.
T Consensus        12 ~~~I~~i~l~~~~~~~~~~~~~~~~~~~ld~d~~~~~lyw~D~~~~~I~r~~~~g~~~~~~~~~~~l~~p~glavd~~~g   91 (318)
T 3sov_A           12 RRDLRLVDATNGKENATIVVGGLEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSPDGLACDWLGE   91 (318)
T ss_dssp             EEEEEEEETTCTTSCCEEEEEEEEEEEEEEEEGGGTEEEEEETTTTEEEEEETTSSSCCCEEEEECCSCCCEEEEETTTT
T ss_pred             cCeEEEEECCCCceEEEEEecCCCccEEEEEEeCCCEEEEEECCCCcEEEEEccCCCceEEEEcCCCCCccEEEEEcCCC
Confidence            4678888887653111 11112234668889874 566677777789999998776421 22222223456788888777


Q ss_pred             eEEEEecCCCeEEEEecCCcceeeeecCCCCCCCCCCccCCCCcceEEEEECCCCCEEEEec--CCCcEEEEEcccceee
Q 021247          116 TLAVAGGGSASVKLWDTATWNLIATLSIPRPEGLKPTDKSSSKKFVLSVAWSPDGRRIACGS--MDGTISVFDVTRAKFL  193 (315)
Q Consensus       116 ~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~s--~dg~i~i~d~~~~~~~  193 (315)
                      .++++-...+.|.++++..........             ........+++.|.+..|+...  ..+.|...++......
T Consensus        92 ~ly~~d~~~~~I~~~~~dG~~~~~l~~-------------~~~~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~~~  158 (318)
T 3sov_A           92 KLYWTDSETNRIEVSNLDGSLRKVLFW-------------QELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSRF  158 (318)
T ss_dssp             EEEEEETTTTEEEEEETTSCSCEEEEC-------------SSCSSEEEEEEEGGGTEEEEEECSSSCEEEEEETTSCSCE
T ss_pred             eEEEEECCCCEEEEEECCCCcEEEEEe-------------CCCCCccEEEEeCCCCEEEEEecCCCCEEEEEEcCCCCeE
Confidence            787777778899999986532211110             0112357899998655554333  3578888887533222


Q ss_pred             eeecCCccceEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCeeEEEeecccccEEEEEEcCCCCeEEEEeCCCcEEEEecC
Q 021247          194 HHLEGHFMPVRSLVYSPVDPRVLFSASDDTHVHMYDAEGKSLVTAMSGHASWVLSVDASPDGAAITTGSSDRTVKLWDLN  273 (315)
Q Consensus       194 ~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~d~~i~iwd~~  273 (315)
                      ..........+.++++|.+++++++-+..+.|..+|..+........+.......+++.. +.++++-...+.|..++..
T Consensus       159 ~~~~~~l~~Pnglavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~~~~~~P~glav~~-~~lywtd~~~~~V~~~~~~  237 (318)
T 3sov_A          159 IIINSEIYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDGTNRQAVVKGSLPHPFALTLFE-DILYWTDWSTHSILACNKY  237 (318)
T ss_dssp             EEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSCCSCEEEEEEET-TEEEEEETTTTEEEEEETT
T ss_pred             EEEECCCCCccEEEEeccCCEEEEEECCCCEEEEEcCCCCceEEEecCCCCCceEEEEeC-CEEEEEecCCCeEEEEECC
Confidence            222222345689999987777777777889999999876443333333445567788763 4566677777889999886


Q ss_pred             cccee
Q 021247          274 MRAAM  278 (315)
Q Consensus       274 ~~~~~  278 (315)
                      +++..
T Consensus       238 ~G~~~  242 (318)
T 3sov_A          238 TGEGL  242 (318)
T ss_dssp             TCCSC
T ss_pred             CCCce
Confidence            65543

>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*

Probab=98.92  E-value=2.4e-06  Score=76.50  Aligned_cols=280  Identities=14%  Similarity=0.047  Sum_probs=160.6

Q ss_pred             cEEEEeeC-CCcEEEEcC-CCCcceeecccccc----c-------eEEEEeCCCCCE----EEEeeCCCeEEEEECCCCc
Q 021247           31 ALLLTGSL-DETVKLWRP-DDMQLERTNTGHCL----G-------VVSVAAHPSGII----AASASLDSFVRVFDVDTNA   93 (315)
Q Consensus        31 ~~l~sgs~-d~~v~~w~~-~~~~~~~~~~~h~~----~-------v~~~~~~~~g~~----l~s~~~d~~i~~w~~~~~~   93 (315)
                      ..++.++. ++.|.-+|. .+++..........    +       ...+.+.|.+..    ++.++.|+.+..+|..+++
T Consensus        63 g~vyv~~~~~~~v~AlD~~~tG~~lW~~~~~~~~~~~~~~~~~~~~~g~av~p~~g~~~~rV~v~t~dg~l~AlDa~TG~  142 (599)
T 1w6s_A           63 GKMYIHTSFPNNTFALGLDDPGTILWQDKPKQNPAARAVACCDLVNRGLAYWPGDGKTPALILKTQLDGNVAALNAETGE  142 (599)
T ss_dssp             TEEEEECSTTTCEEEEETTCTTSEEEEECCCCCGGGGGGCSSCSCCCCCEEECCCSSSCCEEEEECTTSEEEEEETTTCC
T ss_pred             CEEEEEeCCCCEEEEEeCCCCCcEEEEECCCCCccccccccccccccceEEEecCCcceeEEEEEcCCCEEEEEECCCCC
Confidence            35777777 899999999 78877654322110    0       112334333333    6778889999999999999


Q ss_pred             eeEEeeCCcc----cEEE-EEECCCCCeEEEEec-----CCCeEEEEecCCcceeeeecCCCCCCC---CCC--------
Q 021247           94 SIATLEASPS----EVWQ-MQFDPKGTTLAVAGG-----GSASVKLWDTATWNLIATLSIPRPEGL---KPT--------  152 (315)
Q Consensus        94 ~~~~~~~~~~----~v~~-~~~~~~~~~~~~~~~-----~d~~i~~~d~~~~~~~~~~~~~~~~~~---~~~--------  152 (315)
                      .+........    .+.. -.+. + ..+++.++     .++.|..+|.++++.+..+....+...   .+.        
T Consensus       143 ~~W~~~~~~~~~~~~~~ssP~v~-~-g~V~vg~~g~e~g~~g~v~A~D~~TG~~~W~~~~~~~~~~~~~~p~~~~~~~~~  220 (599)
T 1w6s_A          143 TVWKVENSDIKVGSTLTIAPYVV-K-DKVIIGSSGAELGVRGYLTAYDVKTGEQVWRAYATGPDKDLLLASDFNIKNPHY  220 (599)
T ss_dssp             EEEEEECCCGGGTCBCCSCCEEE-T-TEEEECCBCGGGTCCCEEEEEETTTCCEEEEEESSSCHHHHTBCTTTTTTCGGG
T ss_pred             EEEeecCCCCCccceeecCCEEE-C-CEEEEEecccccCCCCeEEEEECCCCcEEEEEcCCCCccccccccccccccccc
Confidence            8776543220    1110 0011 2 33444332     378999999999999988765432100   000        


Q ss_pred             ------------c--cCCCCcceEEEEECCCCCEEEEecCC----------------CcEEEEEcccceeeeeecC--Cc
Q 021247          153 ------------D--KSSSKKFVLSVAWSPDGRRIACGSMD----------------GTISVFDVTRAKFLHHLEG--HF  200 (315)
Q Consensus       153 ------------~--~~~~~~~i~~~~~~~~~~~l~~~s~d----------------g~i~i~d~~~~~~~~~~~~--~~  200 (315)
                                  .  .......-..+++.++...++.++.+                +.|..+|..+++.+-.+..  |.
T Consensus       221 g~~~~g~~tw~g~~~~~gg~~~W~~~a~d~~~g~vy~g~g~~~p~~~~~r~gd~~y~~sv~Ald~~TG~~~W~~q~~~~d  300 (599)
T 1w6s_A          221 GQKGLGTGTWEGDAWKIGGGTNWGWYAYDPGTNLIYFGTGNPAPWNETMRPGDNKWTMTIFGRDADTGEAKFGYQKTPHD  300 (599)
T ss_dssp             CCTTHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTSSEEEEEETTTCCEEEEEESSTTC
T ss_pred             cccccccccCCCcceecCCCccccceeEeCCCCEEEEeCCCCccccCcccCCCccccceEEEEeCCCCceeeEeecCCCc
Confidence                        0  00000000135566777777776654                3799999999987654432  21


Q ss_pred             --------cceEEEEEcCCCC---cEEEEEeCCCeEEEEeCCCCeeEEEeecc------------c-ccE----------
Q 021247          201 --------MPVRSLVYSPVDP---RVLFSASDDTHVHMYDAEGKSLVTAMSGH------------A-SWV----------  246 (315)
Q Consensus       201 --------~~v~~~~~~~~~~---~~l~s~~~d~~i~~wd~~~~~~~~~~~~~------------~-~~i----------  246 (315)
                              .++. +.....++   ..++.++.+|.++++|.++++++-...-.            . .++          
T Consensus       301 ~wd~d~~~~p~l-~d~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~lw~~~~~~~~~~~~~~~~~~g~p~~~~~~~~~~~  379 (599)
T 1w6s_A          301 EWDYAGVNVMML-SEQKDKDGKARKLLTHPDRNGIVYTLDRTDGALVSANKLDDTVNVFKSVDLKTGQPVRDPEYGTRMD  379 (599)
T ss_dssp             SSCCCCCCCCEE-EEEECTTSCEEEEEEEECTTSEEEEEETTTCCEEEEEESSTTCCSEEEECTTTCCEEECGGGCCCTT
T ss_pred             cccccCCCccEE-EeccccCCcEEEEEEEECCCcEEEEEECCCCCEeecccccCCcccccccccCCCceeeccccCCCCC
Confidence                    1221 22220234   46778889999999999988776543311            0 001          


Q ss_pred             ----------------EEEEEcCCCCeEEEEe---------------------------------------CCCcEEEEe
Q 021247          247 ----------------LSVDASPDGAAITTGS---------------------------------------SDRTVKLWD  271 (315)
Q Consensus       247 ----------------~~~~~~~~~~~l~s~~---------------------------------------~d~~i~iwd  271 (315)
                                      ..++++|+..++++..                                       .+|.+..||
T Consensus       380 ~~~~~~~P~~~Gg~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~p~~~~~~~~~~G~l~A~D  459 (599)
T 1w6s_A          380 HLAKDICPSAMGYHNQGHDSYDPKRELFFMGINHICMDWEPFMLPYKAGQFFVGATLNMYPGPKGDRQNYEGLGQIKAYN  459 (599)
T ss_dssp             CCEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEECTTSBTTTTBCCEEEEEEC
T ss_pred             CCccEeccCcccccCCCCccCCCCCCEEEEeccccceeeecccccccCCcceecccceeccCCcCCcccCCCcCeEEEEE
Confidence                            1245666555544321                                       347788888


Q ss_pred             cCccceehcccccccceEEEEEeeCCCEEEEEeCCCcEEEeec
Q 021247          272 LNMRAAMQSMTNHTDQVWGVSFRPLGGRVVSVSDDKSISLYEY  314 (315)
Q Consensus       272 ~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~i~i~~~  314 (315)
                      +.+++.+=+... ..+.++-.+...+..|+.++.|+.++.||.
T Consensus       460 ~~tG~~~W~~~~-~~~~~~g~~~tagg~vf~gt~dg~l~A~D~  501 (599)
T 1w6s_A          460 AITGDYKWEKME-RFAVWGGTMATAGDLVFYGTLDGYLKARDS  501 (599)
T ss_dssp             TTTCCEEEEEEE-SSCCCSBCEEETTTEEEEECTTSEEEEEET
T ss_pred             CCCCCEEeEecC-CCCccCcceEecCCEEEEECCCCeEEEEEC
Confidence            888765433221 122222223446778888999999998884

>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1

Probab=98.90  E-value=1.5e-05  Score=65.71  Aligned_cols=218  Identities=11%  Similarity=0.037  Sum_probs=135.3

Q ss_pred             CCeEEEEECCCCceeEEeeCCcccEEEEEECCCCCeEEEEecCCCeEEEEecCCc---ceeeeecCCCCCCCCCCccCCC
Q 021247           81 DSFVRVFDVDTNASIATLEASPSEVWQMQFDPKGTTLAVAGGGSASVKLWDTATW---NLIATLSIPRPEGLKPTDKSSS  157 (315)
Q Consensus        81 d~~i~~w~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~~d~~~~---~~~~~~~~~~~~~~~~~~~~~~  157 (315)
                      ...|+..++........+. .......++|++.++.++++-...+.|..++....   .....+. +.           .
T Consensus         9 ~~~I~~i~~~~~~~~~~~~-~~~~p~g~~~d~~~~~ly~~D~~~~~I~~~~~~g~~~~~~~~~~~-~~-----------~   75 (316)
T 1ijq_A            9 RHEVRKMTLDRSEYTSLIP-NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVI-SR-----------D   75 (316)
T ss_dssp             BSSEEEEETTSCCCEEEEC-SCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEE-CS-----------S
T ss_pred             CCeEEEEECCCcceEehhc-CCCceEEEEEEeCCCEEEEEECCCCcEEEEECCCCCCCcccEEEE-eC-----------C
Confidence            3568999998776544443 34557799999988888888777889999998651   1111110 00           0


Q ss_pred             CcceEEEEECCCCC-EEEEecCCCcEEEEEcccceeeeeecCCccceEEEEEcCCCCcEEEEEeCC-CeEEEEeCCCCee
Q 021247          158 KKFVLSVAWSPDGR-RIACGSMDGTISVFDVTRAKFLHHLEGHFMPVRSLVYSPVDPRVLFSASDD-THVHMYDAEGKSL  235 (315)
Q Consensus       158 ~~~i~~~~~~~~~~-~l~~~s~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d-~~i~~wd~~~~~~  235 (315)
                      ......+++.+.+. ..++-...+.|.++|+........+.........+++.|.++.++++.... +.|...++.+...
T Consensus        76 ~~~p~glavd~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~P~~iavdp~~g~ly~~d~~~~~~I~~~~~dG~~~  155 (316)
T 1ijq_A           76 IQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDI  155 (316)
T ss_dssp             CSCCCEEEEETTTTEEEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCE
T ss_pred             CCCcCEEEEeecCCeEEEEECCCCEEEEEeCCCCceEEEEECCCCCcceEEeCCCCCEEEEEccCCCCeEEEEcCCCCCe
Confidence            11245788887544 445667788999999865433222332334678999998777666666554 7899998875543


Q ss_pred             EEEeecccccEEEEEEcCCCCeE-EEEeCCCcEEEEecCccceehcc-c--ccccceEEEEEeeCCCEEEEEeCCCcEEE
Q 021247          236 VTAMSGHASWVLSVDASPDGAAI-TTGSSDRTVKLWDLNMRAAMQSM-T--NHTDQVWGVSFRPLGGRVVSVSDDKSISL  311 (315)
Q Consensus       236 ~~~~~~~~~~i~~~~~~~~~~~l-~s~~~d~~i~iwd~~~~~~~~~~-~--~~~~~v~~~~~s~~~~~l~s~~~d~~i~i  311 (315)
                      .......-.....++++|++..| ++-...+.|..+|++... .+.+ .  .......++++. .+..+++-...+.|..
T Consensus       156 ~~~~~~~~~~P~gla~d~~~~~lY~~D~~~~~I~~~d~dg~~-~~~~~~~~~~~~~P~giav~-~~~ly~~d~~~~~V~~  233 (316)
T 1ijq_A          156 YSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGN-RKTILEDEKRLAHPFSLAVF-EDKVFWTDIINEAIFS  233 (316)
T ss_dssp             EEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCS-CEEEEECTTTTSSEEEEEEE-TTEEEEEETTTTEEEE
T ss_pred             EEEEECCCCCceEEEEeccCCEEEEEECCCCeEEEEecCCCc-eEEEeecCCccCCcEEEEEE-CCEEEEEECCCCeEEE
Confidence            32223344578899999876555 555566789999987422 2222 1  122346677774 3444455555677776


Q ss_pred             ee
Q 021247          312 YE  313 (315)
Q Consensus       312 ~~  313 (315)
                      ++
T Consensus       234 ~~  235 (316)
T 1ijq_A          234 AN  235 (316)
T ss_dssp             EE
T ss_pred             Ee
Confidence            65

>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*

Probab=98.90  E-value=2.7e-06  Score=70.27  Aligned_cols=233  Identities=11%  Similarity=0.046  Sum_probs=137.7

Q ss_pred             eEEEEEeecCCCCCcEEEEeeCCCcEEEEcCCCCcceeecc-------------------ccccceEEEEeCC-CCCEEE
Q 021247           17 VWAVTWVPATETRPALLLTGSLDETVKLWRPDDMQLERTNT-------------------GHCLGVVSVAAHP-SGIIAA   76 (315)
Q Consensus        17 v~~v~~~~~~~~~~~~l~sgs~d~~v~~w~~~~~~~~~~~~-------------------~h~~~v~~~~~~~-~g~~l~   76 (315)
                      ..+++|.+.++    +++++..++.|..|+..+.+......                   .....+..+.+.+ +|.+++
T Consensus        21 p~~i~~d~~g~----~l~v~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~p~gi~~~~~~g~l~v   96 (322)
T 2fp8_A           21 PNSFTFDSTNK----GFYTSVQDGRVIKYEGPNSGFVDFAYASPYWNKAFCENSTDAEKRPLCGRTYDISYNLQNNQLYI   96 (322)
T ss_dssp             CCCEECCTTCS----SEEEECTTSEEEEECCTTTCEEEEEESCTTCCHHHHTTCCCGGGHHHHCCEEEEEEETTTTEEEE
T ss_pred             ceEEEEcCCCC----EEEEEcCCCeEEEECCCCCceEEEecccccccccccccccchhccccCCCCceEEEcCCCCcEEE
Confidence            45566665433    58888889999999887654432110                   0113478899997 676655


Q ss_pred             EeeCCCeEEEEECCCCceeEEeeC-----CcccEEEEEECC-CCCeEEEEecC-----------------CCeEEEEecC
Q 021247           77 SASLDSFVRVFDVDTNASIATLEA-----SPSEVWQMQFDP-KGTTLAVAGGG-----------------SASVKLWDTA  133 (315)
Q Consensus        77 s~~~d~~i~~w~~~~~~~~~~~~~-----~~~~v~~~~~~~-~~~~~~~~~~~-----------------d~~i~~~d~~  133 (315)
                      + ...+.+..+|..++.. ..+..     .......+++.+ +|+.+ ++...                 ++.|..+|..
T Consensus        97 ~-d~~~~i~~~d~~~g~~-~~~~~~~~~~~~~~p~~i~~d~~~G~l~-v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~  173 (322)
T 2fp8_A           97 V-DCYYHLSVVGSEGGHA-TQLATSVDGVPFKWLYAVTVDQRTGIVY-FTDVSTLYDDRGVQQIMDTSDKTGRLIKYDPS  173 (322)
T ss_dssp             E-ETTTEEEEECTTCEEC-EEEESEETTEECSCEEEEEECTTTCCEE-EEESCSSCCTTCHHHHHHHTCCCEEEEEEETT
T ss_pred             E-ECCCCEEEEeCCCCEE-EEecccCCCCcccccceEEEecCCCEEE-EECCcccccccccceehcccCCCceEEEEeCC
Confidence            4 3445588888765432 22211     113467889999 88644 44322                 3668888876


Q ss_pred             CcceeeeecCCCCCCCCCCccCCCCcceEEEEECCCCCEEE-EecCCCcEEEEEcccce--eeeeecCCccceEEEEEcC
Q 021247          134 TWNLIATLSIPRPEGLKPTDKSSSKKFVLSVAWSPDGRRIA-CGSMDGTISVFDVTRAK--FLHHLEGHFMPVRSLVYSP  210 (315)
Q Consensus       134 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~-~~s~dg~i~i~d~~~~~--~~~~~~~~~~~v~~~~~~~  210 (315)
                      +++.......              ......++++|+++.|+ +-+.++.|..|++....  ....+..... ...+++.+
T Consensus       174 ~~~~~~~~~~--------------~~~p~gia~~~dg~~lyv~d~~~~~I~~~~~~~~~~~~~~~~~~~~g-P~gi~~d~  238 (322)
T 2fp8_A          174 TKETTLLLKE--------------LHVPGGAEVSADSSFVLVAEFLSHQIVKYWLEGPKKGTAEVLVKIPN-PGNIKRNA  238 (322)
T ss_dssp             TTEEEEEEEE--------------ESCCCEEEECTTSSEEEEEEGGGTEEEEEESSSTTTTCEEEEEECSS-EEEEEECT
T ss_pred             CCEEEEeccC--------------CccCcceEECCCCCEEEEEeCCCCeEEEEECCCCcCCccceEEeCCC-CCCeEECC
Confidence            5443211100              01145799999998665 44667899999986421  0111111112 67788887


Q ss_pred             CCCcEEEEEeC----------CCeEEEEeCCCCeeEEEeecc----cccEEEEEEcCCCCeEEEEeCCCcEEEEecCc
Q 021247          211 VDPRVLFSASD----------DTHVHMYDAEGKSLVTAMSGH----ASWVLSVDASPDGAAITTGSSDRTVKLWDLNM  274 (315)
Q Consensus       211 ~~~~~l~s~~~----------d~~i~~wd~~~~~~~~~~~~~----~~~i~~~~~~~~~~~l~s~~~d~~i~iwd~~~  274 (315)
                       ++.++++...          .+.|..+|.. ++.+..+...    ...+..+.+ .++++.++...++.|..+++..
T Consensus       239 -~G~l~va~~~~~~~~~~~~~~~~v~~~d~~-G~~~~~~~~~~g~~~~~~~~~~~-~~g~L~v~~~~~~~i~~~~~~~  313 (322)
T 2fp8_A          239 -DGHFWVSSSEELDGNMHGRVDPKGIKFDEF-GNILEVIPLPPPFAGEHFEQIQE-HDGLLYIGTLFHGSVGILVYDK  313 (322)
T ss_dssp             -TSCEEEEEEEETTSSTTSCEEEEEEEECTT-SCEEEEEECCTTTTTSCCCEEEE-ETTEEEEECSSCSEEEEEEC--
T ss_pred             -CCCEEEEecCcccccccCCCccEEEEECCC-CCEEEEEECCCCCccccceEEEE-eCCEEEEeecCCCceEEEeccc
Confidence             4566666544          4678889876 4455444322    234556665 4666666666788899988764

>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1

Probab=98.87  E-value=1.4e-05  Score=71.53  Aligned_cols=266  Identities=16%  Similarity=0.153  Sum_probs=153.1

Q ss_pred             cEEEEeeCCCcEEEEcCCCCcceeeccc--ccc--ceE---EEEeC-CCCC-EEEEee------CCCeEEEEECCCCcee
Q 021247           31 ALLLTGSLDETVKLWRPDDMQLERTNTG--HCL--GVV---SVAAH-PSGI-IAASAS------LDSFVRVFDVDTNASI   95 (315)
Q Consensus        31 ~~l~sgs~d~~v~~w~~~~~~~~~~~~~--h~~--~v~---~~~~~-~~g~-~l~s~~------~d~~i~~w~~~~~~~~   95 (315)
                      ..++.++.|+.|.-+|.++++.......  +..  .+.   .+.-. .+|+ .++.++      .++.|+.+|..+++.+
T Consensus       118 ~~v~~~t~dg~l~AlD~~TG~~~W~~~~~~~~~~~~~~~sP~v~~~~~~G~~~v~vg~~~~e~~~~g~v~alD~~tG~~~  197 (582)
T 1flg_A          118 DKVFFGTLDASVVALNKNTGKVVWKKKFADHGAGYTMTGAPTIVKDGKTGKVLLIHGSSGDEFGVVGRLFARDPDTGEEI  197 (582)
T ss_dssp             TEEEEEETTTEEEEEESSSCCEEEEEECSCGGGTCBCCSCCEEEECTTTCCEEEEECCBCGGGCCBCEEEEECTTTCCEE
T ss_pred             CEEEEEeCCCEEEEEECCCCCEEeeecCCCCCcCcccccCCEEeCCCcCCcEEEEEeccccccCCCCEEEEEECCCCCEE
Confidence            4688889999999999988887654321  110  111   11111 1233 455544      3789999999999887


Q ss_pred             EEeeCCccc----------------------------------------E-EEEEECCCCCeEEEEecC-----------
Q 021247           96 ATLEASPSE----------------------------------------V-WQMQFDPKGTTLAVAGGG-----------  123 (315)
Q Consensus        96 ~~~~~~~~~----------------------------------------v-~~~~~~~~~~~~~~~~~~-----------  123 (315)
                      .........                                        + ..++++|....+++..+.           
T Consensus       198 W~~~~~~~~~~p~~~~~~~~~g~~g~~~w~~~~~~~~g~~~~~~~gGg~~w~~~a~d~~~g~vyv~~gn~~~~~~~~r~~  277 (582)
T 1flg_A          198 WMRPFVEGHMGRLNGKDSTVTGDVKAPSWPDDRNSPTGKVESWSHGGGAPWQSASFDAETNTIIVGAGNPGPWNTWARTA  277 (582)
T ss_dssp             EEEESSTTCEEEETTEEEEESSCTTCTTSCBCTTSTTSBCGGGGGCBCCCCSCCEEETTTTEEEEEECCBSSSCGGGGSC
T ss_pred             eecCCCccccccccCcccccccccccccCCCccccccccccccccCCccccCCceEcCCCCEEEEeCCCCCcccCccccc
Confidence            655432100                                        0 124566666666554431           


Q ss_pred             --------C----CeEEEEecCCcceeeeecCCCCCCCCCCccCCCCcceEEEEEC-CCCC---EEEEecCCCcEEEEEc
Q 021247          124 --------S----ASVKLWDTATWNLIATLSIPRPEGLKPTDKSSSKKFVLSVAWS-PDGR---RIACGSMDGTISVFDV  187 (315)
Q Consensus       124 --------d----~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~~---~l~~~s~dg~i~i~d~  187 (315)
                              |    +.|..+|..+++.+..+.........   .......+. +... .+|+   .++.++.+|.++++|.
T Consensus       278 ~gg~~~~~d~~~~~~v~AlD~~TG~~~W~~q~~~~d~wd---~~~~~~p~l-~~~~~~~G~~~~~v~~~~~~G~l~~lD~  353 (582)
T 1flg_A          278 KGGNPHDYDSLYTSGQVGVDPSSGEVKWFYQHTPNDAWD---FSGNNELVL-FDYKAKDGKIVKATAHADRNGFFYVVDR  353 (582)
T ss_dssp             TTSCSTTCCCTTCSEEEEECTTTCCEEEEEESSTTCCSC---CCCCCCCEE-EEEECSSSCEEEEEEEECTTSEEEEEET
T ss_pred             CCCcccccCCcccceEEEEeCCCCCEEEEEeCCCCCccc---ccCCCCcEE-EeeecCCCCEEEEEEEECCCceEEEEEC
Confidence                    2    68999999999999887543221100   000011121 1221 4564   6788999999999999


Q ss_pred             ccceeeeeecCCc-------------cce--------------------------------EEEEEcCCCCcEEEEEe--
Q 021247          188 TRAKFLHHLEGHF-------------MPV--------------------------------RSLVYSPVDPRVLFSAS--  220 (315)
Q Consensus       188 ~~~~~~~~~~~~~-------------~~v--------------------------------~~~~~~~~~~~~l~s~~--  220 (315)
                      .+++.+-......             .++                                ..++++|..+.+++...  
T Consensus       354 ~tG~~lw~~~~~~~~~~~~~~~~~~g~p~~~~~~~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~g~~yv~~~~~  433 (582)
T 1flg_A          354 SNGKLQNAFPFVDNITWASHIDLKTGRPVEREGQRPPLPEPGQKHGKAVEVSPPFLGGKNWNPMAYSQDTGLFYVPANHW  433 (582)
T ss_dssp             TTCCEEEEEESSSCCCSEEEECTTTCCEEECTTCSCCCCCTTCSSCCCEEESSCTTCSSCSSCCEECTTTCCEEEEEECE
T ss_pred             CCCCEecccccccCccccccccccCCCEeEccccCCccccccccCCCceEECcCCccccCCCCceECCCCCEEEEechhc
Confidence            9988764433211             000                                12345553333333221  


Q ss_pred             ------------------------------CCCeEEEEeCCCCeeEEEeecccccEEEEEEcCCCCeEEEEeCCCcEEEE
Q 021247          221 ------------------------------DDTHVHMYDAEGKSLVTAMSGHASWVLSVDASPDGAAITTGSSDRTVKLW  270 (315)
Q Consensus       221 ------------------------------~d~~i~~wd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~d~~i~iw  270 (315)
                                                    .++.|.-||+.+++.+=+..... ....-.+...+.+++.|+.|+.++.|
T Consensus       434 ~~~~~~~~~~~~~g~~~~g~~~~~~p~~~~~~G~l~A~D~~tG~~~W~~~~~~-~~~~g~~~tagglvf~g~~dg~l~A~  512 (582)
T 1flg_A          434 KEDYWTEEVSYTKGSAYLGMGFRIKRMYDDHVGSLRAMDPVSGKVVWEHKEHL-PLWAGVLATAGNLVFTGTGDGYFKAF  512 (582)
T ss_dssp             EEEEEECCCCCCTTSCCCCEEEEEEESCSSCSEEEEEECTTTCCEEEEEEESS-CCCSCCEEETTTEEEEECTTSEEEEE
T ss_pred             ceeeecccccccCCCceeccceeecCCCCCCcceEEEEECCCCCEEEEecCCC-CCcccceEeCCCEEEEECCCCcEEEE
Confidence                                          35789999998887654433221 11111112245678889999999999


Q ss_pred             ecCccceehcccccccc-eEEEEEeeCCCEEE
Q 021247          271 DLNMRAAMQSMTNHTDQ-VWGVSFRPLGGRVV  301 (315)
Q Consensus       271 d~~~~~~~~~~~~~~~~-v~~~~~s~~~~~l~  301 (315)
                      |.++++.+-++...... ..-+.+..+|+..+
T Consensus       513 D~~tG~~lW~~~~~~g~~a~P~~y~~~G~qYv  544 (582)
T 1flg_A          513 DAKSGKELWKFQTGSGIVSPPITWEQDGEQYL  544 (582)
T ss_dssp             ETTTCCEEEEEECSSCCCSCCEEEEETTEEEE
T ss_pred             ECCCCCEEEEecCCCCcccCceEEEECCEEEE
Confidence            99999887665443221 11256778887443

>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B

Probab=98.86  E-value=6.6e-06  Score=67.80  Aligned_cols=221  Identities=8%  Similarity=0.001  Sum_probs=133.6

Q ss_pred             CCeEEEEECCCCc-eeEEeeCCcccEEEEEECCCCCeEEEEecCCCeEEEEecCCcceeeeecCCCCCCCCCCccCCCCc
Q 021247           81 DSFVRVFDVDTNA-SIATLEASPSEVWQMQFDPKGTTLAVAGGGSASVKLWDTATWNLIATLSIPRPEGLKPTDKSSSKK  159 (315)
Q Consensus        81 d~~i~~w~~~~~~-~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~  159 (315)
                      ...|+..++.... ....+.........++|++.+..++.+-...+.|..++.........+..            ....
T Consensus        12 ~~~I~~i~l~~~~~~~~~~~~~~~~~~~ld~d~~~~~lyw~D~~~~~I~r~~~~g~~~~~~~~~------------~~l~   79 (318)
T 3sov_A           12 RRDLRLVDATNGKENATIVVGGLEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVV------------SGLL   79 (318)
T ss_dssp             EEEEEEEETTCTTSCCEEEEEEEEEEEEEEEEGGGTEEEEEETTTTEEEEEETTSSSCCCEEEE------------ECCS
T ss_pred             cCeEEEEECCCCceEEEEEecCCCccEEEEEEeCCCEEEEEECCCCcEEEEEccCCCceEEEEc------------CCCC
Confidence            4679999988763 22222222235668899998777888877788899898865421111100            0011


Q ss_pred             ceEEEEECCC-CCEEEEecCCCcEEEEEcccceeeeeecCCccceEEEEEcCCCCcEEEEEe-CCCeEEEEeCCCCeeEE
Q 021247          160 FVLSVAWSPD-GRRIACGSMDGTISVFDVTRAKFLHHLEGHFMPVRSLVYSPVDPRVLFSAS-DDTHVHMYDAEGKSLVT  237 (315)
Q Consensus       160 ~i~~~~~~~~-~~~l~~~s~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~-~d~~i~~wd~~~~~~~~  237 (315)
                      ....+++.+. ++.+++-...+.|.++++................+.+++.|.++.++++-. ..+.|...++.+.....
T Consensus        80 ~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~~~l~~~~~~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~  159 (318)
T 3sov_A           80 SPDGLACDWLGEKLYWTDSETNRIEVSNLDGSLRKVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSRFI  159 (318)
T ss_dssp             CCCEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEEGGGTEEEEEECSSSCEEEEEETTSCSCEE
T ss_pred             CccEEEEEcCCCeEEEEECCCCEEEEEECCCCcEEEEEeCCCCCccEEEEeCCCCEEEEEecCCCCEEEEEEcCCCCeEE
Confidence            2457888874 455566667789999998654322222234456789999986666666653 36789999987654333


Q ss_pred             EeecccccEEEEEEcCCCCeE-EEEeCCCcEEEEecCccceehcccccccceEEEEEeeCCCEEEEEeCCCcEEEeec
Q 021247          238 AMSGHASWVLSVDASPDGAAI-TTGSSDRTVKLWDLNMRAAMQSMTNHTDQVWGVSFRPLGGRVVSVSDDKSISLYEY  314 (315)
Q Consensus       238 ~~~~~~~~i~~~~~~~~~~~l-~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~i~i~~~  314 (315)
                      .....-...+.++++|++..| ++-...+.|..++++................++++.. +..+.+-...+.|..++.
T Consensus       160 ~~~~~l~~Pnglavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~~~~~~P~glav~~-~~lywtd~~~~~V~~~~~  236 (318)
T 3sov_A          160 IINSEIYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDGTNRQAVVKGSLPHPFALTLFE-DILYWTDWSTHSILACNK  236 (318)
T ss_dssp             EECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSCCSCEEEEEEET-TEEEEEETTTTEEEEEET
T ss_pred             EEECCCCCccEEEEeccCCEEEEEECCCCEEEEEcCCCCceEEEecCCCCCceEEEEeC-CEEEEEecCCCeEEEEEC
Confidence            333334567899999965544 5555677899999874222111222234566777743 333445445566666653

>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}

Probab=98.83  E-value=8.9e-06  Score=70.04  Aligned_cols=235  Identities=9%  Similarity=0.069  Sum_probs=139.1

Q ss_pred             ceEEEEeCC-CCCEEEEeeCCCeEEEEECCCCceeEEeeCCcccEEEEEECCCCCeEEEEecCCC----eEEEEecCCcc
Q 021247           62 GVVSVAAHP-SGIIAASASLDSFVRVFDVDTNASIATLEASPSEVWQMQFDPKGTTLAVAGGGSA----SVKLWDTATWN  136 (315)
Q Consensus        62 ~v~~~~~~~-~g~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~----~i~~~d~~~~~  136 (315)
                      ....++++| ++..|..+...+.|+.+|+..+...... ........++++++++.++++....+    .+..++. .+.
T Consensus       138 ~P~~lavdp~~~g~Lyv~d~~~~I~~id~~~~~v~~~~-~~~~~P~~ia~d~~G~~lyvad~~~~~~~~~v~~~~~-~g~  215 (430)
T 3tc9_A          138 GAVWLSFDPKNHNHLYLVGEQHPTRLIDFEKEYVSTVY-SGLSKVRTICWTHEADSMIITNDQNNNDRPNNYILTR-ESG  215 (430)
T ss_dssp             CCCEEEEETTEEEEEEEEEBTEEEEEEETTTTEEEEEE-CCCSCEEEEEECTTSSEEEEEECCSCTTSEEEEEEEG-GGT
T ss_pred             CCCEEEECCCCCCeEEEEeCCCcEEEEECCCCEEEEEe-cCCCCcceEEEeCCCCEEEEEeCCCCcccceEEEEeC-CCc
Confidence            346788887 3444444444478999998876543333 34456789999999997777654332    2333332 222


Q ss_pred             ee--eeecCCCCCCCCCCccCCCCcceEEEEECC-CCCEEEEecCCCcEEEEEcccceeeeeec-CCccceEEEEEcCCC
Q 021247          137 LI--ATLSIPRPEGLKPTDKSSSKKFVLSVAWSP-DGRRIACGSMDGTISVFDVTRAKFLHHLE-GHFMPVRSLVYSPVD  212 (315)
Q Consensus       137 ~~--~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~s~dg~i~i~d~~~~~~~~~~~-~~~~~v~~~~~~~~~  212 (315)
                      ..  ..+.              .......++++| ++..+++-..++.|..+|...+....... ......+.++|+|.+
T Consensus       216 ~~~~~~l~--------------~~~~p~giavdp~~g~lyv~d~~~~~V~~~~~~~~~~~~~~~~~~~~~P~gia~~pdG  281 (430)
T 3tc9_A          216 FKVITELT--------------KGQNCNGAETHPINGELYFNSWNAGQVFRYDFTTQETTPLFTIQDSGWEFHIQFHPSG  281 (430)
T ss_dssp             SCSEEEEE--------------ECSSCCCEEECTTTCCEEEEETTTTEEEEEETTTTEEEEEEECSSSSCCEEEEECTTS
T ss_pred             eeeeeeec--------------cCCCceEEEEeCCCCEEEEEECCCCEEEEEECCCCcEEEEEEcCCCCcceeEEEcCCC
Confidence            21  1110              011245788999 67777777778899999987665422221 112346789999955


Q ss_pred             CcEEEEEeCCCeEEEEeCCC--Cee--EEEeecc---------------cccEE-EEEEc--------CCCCeEEEEeCC
Q 021247          213 PRVLFSASDDTHVHMYDAEG--KSL--VTAMSGH---------------ASWVL-SVDAS--------PDGAAITTGSSD  264 (315)
Q Consensus       213 ~~~l~s~~~d~~i~~wd~~~--~~~--~~~~~~~---------------~~~i~-~~~~~--------~~~~~l~s~~~d  264 (315)
                      ..++++-...+.|..++...  +.+  +..+.+.               -.... .+...        +++.+.++-..+
T Consensus       282 ~~lyv~d~~~~~I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~~gv~v~~~~y~~~D~~g~lyvaD~~n  361 (430)
T 3tc9_A          282 NYAYIVVVNQHYILRSDYDWKTKRLTTPYIVCGQQGAKDWVDGVGKKARMHAPRQGTFVKNPAYKGSSDEYDFYFCDREN  361 (430)
T ss_dssp             SEEEEEETTTTEEEEEEEETTTTEECCCEEEEECTTCBCCBCEEGGGCBBSSEEEEEEEECGGGTTSSCCEEEEEEEGGG
T ss_pred             CEEEEEECCCCEEEEEeCCcccccccceEEEeccCCCCCCCCCCCcceEeCCCcceEEEccccccccCCCCeEEEEECCC
Confidence            44677777788999987653  221  1111111               11233 45553        346666666667


Q ss_pred             CcEEEEecCccceehccccc------------------ccceEEEEEeeC-CCEEEEEeCCCcEEEeec
Q 021247          265 RTVKLWDLNMRAAMQSMTNH------------------TDQVWGVSFRPL-GGRVVSVSDDKSISLYEY  314 (315)
Q Consensus       265 ~~i~iwd~~~~~~~~~~~~~------------------~~~v~~~~~s~~-~~~l~s~~~d~~i~i~~~  314 (315)
                      +.|+.++.. +... ++.+.                  -...++++++|+ +..+++-....+|+.++.
T Consensus       362 ~~I~~i~~~-G~v~-~~~g~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g~lyVaD~~n~rIr~i~~  428 (430)
T 3tc9_A          362 HCIRILTPQ-GRVT-TFAGRGSNGTSGYNDGDLRQEARFNHPEGIVYDEERECFFIGDRENRRIRKIGY  428 (430)
T ss_dssp             TEEEEECTT-SEEE-EEEECCTTSSSSCBCEETTTTCBCSSEEEEEEETTTTEEEEEEGGGTEEEEEEE
T ss_pred             cEEEEECCC-CcEE-EEEeCCCCCCCcccCCCchhhcEeCCCcEEEEECCCCEEEEEECCCCeEEEEcc
Confidence            888888843 3322 22111                  125789999995 555566666678888775

>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1

Probab=98.82  E-value=2.6e-05  Score=69.79  Aligned_cols=277  Identities=13%  Similarity=0.103  Sum_probs=159.3

Q ss_pred             cEEEEeeCCCcEEEEcCCCCcceeeccccccc-e--------EEEEeCCCCCEEEEeeCCCeEEEEECCCCceeEEeeCC
Q 021247           31 ALLLTGSLDETVKLWRPDDMQLERTNTGHCLG-V--------VSVAAHPSGIIAASASLDSFVRVFDVDTNASIATLEAS  101 (315)
Q Consensus        31 ~~l~sgs~d~~v~~w~~~~~~~~~~~~~h~~~-v--------~~~~~~~~g~~l~s~~~d~~i~~w~~~~~~~~~~~~~~  101 (315)
                      ..++.++.++.|.-+|..+++........... .        ..+.+  .+..++.++.|+.+..+|..+++.+......
T Consensus        69 g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~g~a~--~~~~v~~~t~dg~l~AlD~~TG~~~W~~~~~  146 (582)
T 1flg_A           69 GVIYVTASYSRLFALDAKTGKRLWTYNHRLPDDIRPCCDVVNRGAAI--YGDKVFFGTLDASVVALNKNTGKVVWKKKFA  146 (582)
T ss_dssp             TEEEEEETTTEEEEEESSSCCEEEEEECCCCTTCCCSSCSCCCCCEE--ETTEEEEEETTTEEEEEESSSCCEEEEEECS
T ss_pred             CEEEEEcCCCCEEEEECCCCcEEEEEcCCCCcccccccccCCCccEE--ECCEEEEEeCCCEEEEEECCCCCEEeeecCC
Confidence            35666676455888898888776544322110 0        11111  2456677888999999999999988766543


Q ss_pred             c---------ccEEEEEEC-CCCCeEEEEec------CCCeEEEEecCCcceeeeecCCCC---------------CCCC
Q 021247          102 P---------SEVWQMQFD-PKGTTLAVAGG------GSASVKLWDTATWNLIATLSIPRP---------------EGLK  150 (315)
Q Consensus       102 ~---------~~v~~~~~~-~~~~~~~~~~~------~d~~i~~~d~~~~~~~~~~~~~~~---------------~~~~  150 (315)
                      .         .++  +.-. .+++..++.+.      .++.|..+|..+++.+........               .+..
T Consensus       147 ~~~~~~~~~~sP~--v~~~~~~G~~~v~vg~~~~e~~~~g~v~alD~~tG~~~W~~~~~~~~~~p~~~~~~~~~g~~g~~  224 (582)
T 1flg_A          147 DHGAGYTMTGAPT--IVKDGKTGKVLLIHGSSGDEFGVVGRLFARDPDTGEEIWMRPFVEGHMGRLNGKDSTVTGDVKAP  224 (582)
T ss_dssp             CGGGTCBCCSCCE--EEECTTTCCEEEEECCBCGGGCCBCEEEEECTTTCCEEEEEESSTTCEEEETTEEEEESSCTTCT
T ss_pred             CCCcCcccccCCE--EeCCCcCCcEEEEEeccccccCCCCEEEEEECCCCCEEeecCCCccccccccCcccccccccccc
Confidence            2         122  1111 12332334443      378999999999998876543210               0000


Q ss_pred             --CCc------------cCCCCcceEEEEECCCCCEEEEecC--------------------C----CcEEEEEccccee
Q 021247          151 --PTD------------KSSSKKFVLSVAWSPDGRRIACGSM--------------------D----GTISVFDVTRAKF  192 (315)
Q Consensus       151 --~~~------------~~~~~~~i~~~~~~~~~~~l~~~s~--------------------d----g~i~i~d~~~~~~  192 (315)
                        +..            ......+ ..++++|+...++.++.                    |    +.|..+|+.+++.
T Consensus       225 ~w~~~~~~~~g~~~~~~~gGg~~w-~~~a~d~~~g~vyv~~gn~~~~~~~~r~~~gg~~~~~d~~~~~~v~AlD~~TG~~  303 (582)
T 1flg_A          225 SWPDDRNSPTGKVESWSHGGGAPW-QSASFDAETNTIIVGAGNPGPWNTWARTAKGGNPHDYDSLYTSGQVGVDPSSGEV  303 (582)
T ss_dssp             TSCBCTTSTTSBCGGGGGCBCCCC-SCCEEETTTTEEEEEECCBSSSCGGGGSCTTSCSTTCCCTTCSEEEEECTTTCCE
T ss_pred             cCCCccccccccccccccCCcccc-CCceEcCCCCEEEEeCCCCCcccCcccccCCCcccccCCcccceEEEEeCCCCCE
Confidence              000            0000111 24667777777765542                    2    5799999999987


Q ss_pred             eeeec--CCc--------cceEEEEEcCCCC---cEEEEEeCCCeEEEEeCCCCeeEEEeeccc--ccEE----------
Q 021247          193 LHHLE--GHF--------MPVRSLVYSPVDP---RVLFSASDDTHVHMYDAEGKSLVTAMSGHA--SWVL----------  247 (315)
Q Consensus       193 ~~~~~--~~~--------~~v~~~~~~~~~~---~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~--~~i~----------  247 (315)
                      +-...  .|.        .++. +.....++   .+++.++.+|.++++|.++++++-......  .+..          
T Consensus       304 ~W~~q~~~~d~wd~~~~~~p~l-~~~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~lw~~~~~~~~~~~~~~~~~~g~p~  382 (582)
T 1flg_A          304 KWFYQHTPNDAWDFSGNNELVL-FDYKAKDGKIVKATAHADRNGFFYVVDRSNGKLQNAFPFVDNITWASHIDLKTGRPV  382 (582)
T ss_dssp             EEEEESSTTCCSCCCCCCCCEE-EEEECSSSCEEEEEEEECTTSEEEEEETTTCCEEEEEESSSCCCSEEEECTTTCCEE
T ss_pred             EEEEeCCCCCcccccCCCCcEE-EeeecCCCCEEEEEEEECCCceEEEEECCCCCEecccccccCccccccccccCCCEe
Confidence            65543  221        1221 22210134   478889999999999999887765443211  0000          


Q ss_pred             ---------------------------------EEEEcCCCCeEEEEe--------------------------------
Q 021247          248 ---------------------------------SVDASPDGAAITTGS--------------------------------  262 (315)
Q Consensus       248 ---------------------------------~~~~~~~~~~l~s~~--------------------------------  262 (315)
                                                       .++++|+..++++..                                
T Consensus       383 ~~~~~~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~p~~~  462 (582)
T 1flg_A          383 EREGQRPPLPEPGQKHGKAVEVSPPFLGGKNWNPMAYSQDTGLFYVPANHWKEDYWTEEVSYTKGSAYLGMGFRIKRMYD  462 (582)
T ss_dssp             ECTTCSCCCCCTTCSSCCCEEESSCTTCSSCSSCCEECTTTCCEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEESCS
T ss_pred             EccccCCccccccccCCCceEECcCCccccCCCCceECCCCCEEEEechhcceeeecccccccCCCceeccceeecCCCC
Confidence                                             235566544444432                                


Q ss_pred             -CCCcEEEEecCccceehcccccccceEEEEEeeCCCEEEEEeCCCcEEEeec
Q 021247          263 -SDRTVKLWDLNMRAAMQSMTNHTDQVWGVSFRPLGGRVVSVSDDKSISLYEY  314 (315)
Q Consensus       263 -~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~i~i~~~  314 (315)
                       .+|.|..||+.+++.+=+.... .++++-.....+..++.++.|+.++.||.
T Consensus       463 ~~~G~l~A~D~~tG~~~W~~~~~-~~~~~g~~~tagglvf~g~~dg~l~A~D~  514 (582)
T 1flg_A          463 DHVGSLRAMDPVSGKVVWEHKEH-LPLWAGVLATAGNLVFTGTGDGYFKAFDA  514 (582)
T ss_dssp             SCSEEEEEECTTTCCEEEEEEES-SCCCSCCEEETTTEEEEECTTSEEEEEET
T ss_pred             CCcceEEEEECCCCCEEEEecCC-CCCcccceEeCCCEEEEECCCCcEEEEEC
Confidence             3578999999888764333222 22333233345778888999999999984

>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}

Probab=98.82  E-value=1.4e-05  Score=63.25  Aligned_cols=201  Identities=15%  Similarity=0.145  Sum_probs=129.4

Q ss_pred             eeCCcccEEEEEECCCCCeEEEEecCCCeEEEEecCCcceeeeecCCCCCCCCCCccCCCCcceEEEEECCCCCEEEEec
Q 021247           98 LEASPSEVWQMQFDPKGTTLAVAGGGSASVKLWDTATWNLIATLSIPRPEGLKPTDKSSSKKFVLSVAWSPDGRRIACGS  177 (315)
Q Consensus        98 ~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~s  177 (315)
                      +..-...+..++++|+++.++++...++.|...|.. ++.+..+.+...            .-...+++.+++.++++.-
T Consensus        22 l~g~~~~lSGla~~~~~~~L~aV~d~~~~I~~ld~~-g~v~~~i~l~g~------------~D~EGIa~~~~g~~~vs~E   88 (255)
T 3qqz_A           22 IAGITNNISSLTWSAQSNTLFSTINKPAAIVEMTTN-GDLIRTIPLDFV------------KDLETIEYIGDNQFVISDE   88 (255)
T ss_dssp             CTTCCSCEEEEEEETTTTEEEEEEETTEEEEEEETT-CCEEEEEECSSC------------SSEEEEEECSTTEEEEEET
T ss_pred             CCCcccCcceeEEeCCCCEEEEEECCCCeEEEEeCC-CCEEEEEecCCC------------CChHHeEEeCCCEEEEEEC
Confidence            334456799999999888787777788999999997 777777654221            1156788888887767766


Q ss_pred             CCCcEEEEEccccee---eeeec------CCccceEEEEEcCCCCcEEEEEeCCC-eEEEEeCC-CCeeEEEee------
Q 021247          178 MDGTISVFDVTRAKF---LHHLE------GHFMPVRSLVYSPVDPRVLFSASDDT-HVHMYDAE-GKSLVTAMS------  240 (315)
Q Consensus       178 ~dg~i~i~d~~~~~~---~~~~~------~~~~~v~~~~~~~~~~~~l~s~~~d~-~i~~wd~~-~~~~~~~~~------  240 (315)
                      .++.+.++++.....   +....      ..+.....++|.|.+.+++++.-.+. .|+.|+.. ....+....      
T Consensus        89 ~~~~l~~~~v~~~~~i~~~~~~~~~~~~~~~N~g~EGLA~d~~~~~L~va~E~~p~~i~~~~g~~~~~~l~i~~~~~~~~  168 (255)
T 3qqz_A           89 RDYAIYVISLTPNSEVKILKKIKIPLQESPTNCGFEGLAYSRQDHTFWFFKEKNPIEVYKVNGLLSSNELHISKDKALQR  168 (255)
T ss_dssp             TTTEEEEEEECTTCCEEEEEEEECCCSSCCCSSCCEEEEEETTTTEEEEEEESSSEEEEEEESTTCSSCCEEEECHHHHH
T ss_pred             CCCcEEEEEcCCCCeeeeeeeeccccccccccCCcceEEEeCCCCEEEEEECcCCceEEEEcccccCCceeeecchhhcc
Confidence            678899988754331   22221      12445689999996666666555554 56666621 111111111      


Q ss_pred             -cccccEEEEEEcCC-CCeEEEEeCCCcEEEEecCccceehccccc---------ccceEEEEEeeCCCEEEEEeCCCcE
Q 021247          241 -GHASWVLSVDASPD-GAAITTGSSDRTVKLWDLNMRAAMQSMTNH---------TDQVWGVSFRPLGGRVVSVSDDKSI  309 (315)
Q Consensus       241 -~~~~~i~~~~~~~~-~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~---------~~~v~~~~~s~~~~~l~s~~~d~~i  309 (315)
                       .+...+.+++++|. +++++.....+.+.++|... +.+..+.-.         -.+...|+|.++|+ |..+++...+
T Consensus       169 ~~~~~d~S~l~~dp~tg~lliLS~~s~~L~~~d~~g-~~~~~~~L~~g~~~l~~~~~qpEGia~d~~G~-lyIvsE~n~~  246 (255)
T 3qqz_A          169 QFTLDDVSGAEFNQQKNTLLVLSHESRALQEVTLVG-EVIGEMSLTKGSRGLSHNIKQAEGVAMDASGN-IYIVSEPNRF  246 (255)
T ss_dssp             TCCSSCCCEEEEETTTTEEEEEETTTTEEEEECTTC-CEEEEEECSTTGGGCSSCCCSEEEEEECTTCC-EEEEETTTEE
T ss_pred             ccccCCceeEEEcCCCCeEEEEECCCCeEEEEcCCC-CEEEEEEcCCccCCcccccCCCCeeEECCCCC-EEEEcCCceE
Confidence             12334678999995 55667777777888888763 343332211         13678999999997 5555777766


Q ss_pred             EEee
Q 021247          310 SLYE  313 (315)
Q Consensus       310 ~i~~  313 (315)
                      ..|.
T Consensus       247 y~f~  250 (255)
T 3qqz_A          247 YRFT  250 (255)
T ss_dssp             EEEE
T ss_pred             EEEE
Confidence            6553

>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}

Probab=98.82  E-value=3e-05  Score=71.64  Aligned_cols=227  Identities=9%  Similarity=-0.015  Sum_probs=143.0

Q ss_pred             CCcEEEEcCCCCcceeeccccccceEEEEeCC-CCCEEEEeeCCCeEEEEECCCC----ceeEEeeCCcccEEEEEECCC
Q 021247           39 DETVKLWRPDDMQLERTNTGHCLGVVSVAAHP-SGIIAASASLDSFVRVFDVDTN----ASIATLEASPSEVWQMQFDPK  113 (315)
Q Consensus        39 d~~v~~w~~~~~~~~~~~~~h~~~v~~~~~~~-~g~~l~s~~~d~~i~~w~~~~~----~~~~~~~~~~~~v~~~~~~~~  113 (315)
                      ...|+..+++......... ....+..+++++ .+.++++-...+.|+.+++...    .....+.........+++++.
T Consensus       403 ~~~Ir~i~l~~~~~~~l~~-~~~~~~gl~~d~~~~~lY~sD~~~~~I~~~~l~g~~~~~~~~~vi~~~l~~P~GLAvD~~  481 (791)
T 3m0c_C          403 RHEVRKMTLDRSEYTSLIP-NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWI  481 (791)
T ss_dssp             BSSEEEECTTSCCCEEEEC-SCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEETT
T ss_pred             ccceeEeeccCCcceeeec-CCCceEEEeecccCCeeEEeeccceeEEEEeccCCCCCcceeEEEecCCCCcceeeeeec
Confidence            3567777776554433333 234567888887 4566667677788999998753    222333333445668899988


Q ss_pred             CCeEEEEecCCCeEEEEecCCcceeeeecCCCCCCCCCCccCCCCcceEEEEECCCCCEE-EEecC-CCcEEEEEcccce
Q 021247          114 GTTLAVAGGGSASVKLWDTATWNLIATLSIPRPEGLKPTDKSSSKKFVLSVAWSPDGRRI-ACGSM-DGTISVFDVTRAK  191 (315)
Q Consensus       114 ~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l-~~~s~-dg~i~i~d~~~~~  191 (315)
                      +..++++-...+.|.+.++........+..             .......|+++|.+.+| ++-.. .+.|...++....
T Consensus       482 ~~~LY~tD~~~~~I~v~~ldG~~~~~l~~~-------------~l~~P~gIaVDp~~g~LYwtD~g~~~~I~~~~~dG~~  548 (791)
T 3m0c_C          482 HSNIYWTDSVLGTVSVADTKGVKRKTLFRE-------------NGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVD  548 (791)
T ss_dssp             TTEEEEEETTTTEEEEEETTSSSEEEEEEC-------------TTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCC
T ss_pred             CCcEEEEecCCCeEEEEeCCCCeEEEEEeC-------------CCCCcceEEEecCCCCEEEecCCCCCeEEEEecCCCc
Confidence            888888888889999999875432222110             11226789999975554 44333 3788888886544


Q ss_pred             eeeeecCCccceEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCeeEEEeec--ccccEEEEEEcCCCCeEEEEeCCCcEEE
Q 021247          192 FLHHLEGHFMPVRSLVYSPVDPRVLFSASDDTHVHMYDAEGKSLVTAMSG--HASWVLSVDASPDGAAITTGSSDRTVKL  269 (315)
Q Consensus       192 ~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~--~~~~i~~~~~~~~~~~l~s~~~d~~i~i  269 (315)
                      ....+.......+.|++.+.+++++++-...+.|..+++.+.........  ......+|++.. +.++++-...+.|..
T Consensus       549 ~~~lv~~~l~~P~GLavD~~~~~LYwaD~~~~~I~~~d~dG~~~~~v~~~~~~l~~P~glav~~-~~lYwtD~~~~~I~~  627 (791)
T 3m0c_C          549 IYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVFE-DKVFWTDIINEAIFS  627 (791)
T ss_dssp             EEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEECTTTTSSEEEEEEET-TEEEEEETTTTEEEE
T ss_pred             eEEEEeCCCCCceEEEEecCCCeEEEEeCCCCcEEEEecCCCceEEEecCCCccCCCCEEEEeC-CEEEEEECCCCEEEE
Confidence            33333333456789999987777777767778999999876654444332  223456777743 355666667788888


Q ss_pred             EecCccceehc
Q 021247          270 WDLNMRAAMQS  280 (315)
Q Consensus       270 wd~~~~~~~~~  280 (315)
                      .+..+++.+..
T Consensus       628 ~dk~tG~~~~~  638 (791)
T 3m0c_C          628 ANRLTGSDVNL  638 (791)
T ss_dssp             EETTTCCCCEE
T ss_pred             EeCCCCcceEE
Confidence            88666544433

>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L

Probab=98.81  E-value=4.2e-05  Score=65.19  Aligned_cols=219  Identities=11%  Similarity=0.025  Sum_probs=137.6

Q ss_pred             CCCeEEEEECCCCceeEEeeCCcccEEEEEECCCCCeEEEEecCCCeEEEEecCCcc----eeeeecCCCCCCCCCCccC
Q 021247           80 LDSFVRVFDVDTNASIATLEASPSEVWQMQFDPKGTTLAVAGGGSASVKLWDTATWN----LIATLSIPRPEGLKPTDKS  155 (315)
Q Consensus        80 ~d~~i~~w~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~~d~~~~~----~~~~~~~~~~~~~~~~~~~  155 (315)
                      ....|+..++........+ .....+..++|++.+..++++-...+.|..+++....    ....+.             
T Consensus        90 ~~~~I~~i~l~~~~~~~~~-~~~~~~~~l~~d~~~~~lywsD~~~~~I~~~~~~g~~~~~~~~~~~~-------------  155 (400)
T 3p5b_L           90 NRHEVRKMTLDRSEYTSLI-PNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVIS-------------  155 (400)
T ss_dssp             ETTEEEEECTTSCSCEEEE-CSCSCEEEEEEETTTTEEEEEETTTTEEEEEEC------CCCEEEEC-------------
T ss_pred             ccceeEEEccCCcceeEec-cccCcceEEeeeeccCceEEEecCCCeEEEEEcccCCCCCcceEEEe-------------
Confidence            3467999998876544433 3456678999999888888887777889888876421    111110             


Q ss_pred             CCCcceEEEEECC-CCCEEEEecCCCcEEEEEcccceeeeeecCCccceEEEEEcCCCCcEEEEEeC-CCeEEEEeCCCC
Q 021247          156 SSKKFVLSVAWSP-DGRRIACGSMDGTISVFDVTRAKFLHHLEGHFMPVRSLVYSPVDPRVLFSASD-DTHVHMYDAEGK  233 (315)
Q Consensus       156 ~~~~~i~~~~~~~-~~~~l~~~s~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~-d~~i~~wd~~~~  233 (315)
                      ........+++.+ .+++.++-...+.|.+.++........+.......+.+++.|.++.++++-.. .+.|...++.+.
T Consensus       156 ~~~~~p~glavD~~~~~lY~~d~~~~~I~~~~~~g~~~~~l~~~~~~~P~~iavdp~~g~ly~td~~~~~~I~~~~~dG~  235 (400)
T 3p5b_L          156 RDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGV  235 (400)
T ss_dssp             SSCSCEEEEEEETTTTEEEEEETTTTEEEEECTTTCSEEEEEECSSCCEEEEEEETTTTEEEEEECSSSCCEEEEETTSC
T ss_pred             CCCCCcccEEEEecCCceEEEECCCCeEEEEeCCCCceEEEEeCCCCCcceEEEecccCeEEEEeCCCCCEEEEEeCCCC
Confidence            0112367899988 45555666778899999987554333333344457899999877766666543 478999998865


Q ss_pred             eeEEEeecccccEEEEEEcCCCCeEEEE-eCCCcEEEEecCccceehcccc--cccceEEEEEeeCCCEEEEEeCCCcEE
Q 021247          234 SLVTAMSGHASWVLSVDASPDGAAITTG-SSDRTVKLWDLNMRAAMQSMTN--HTDQVWGVSFRPLGGRVVSVSDDKSIS  310 (315)
Q Consensus       234 ~~~~~~~~~~~~i~~~~~~~~~~~l~s~-~~d~~i~iwd~~~~~~~~~~~~--~~~~v~~~~~s~~~~~l~s~~~d~~i~  310 (315)
                      .........-...+.|+++|++..|..+ ...+.|..+|++..........  .-....++++. .+..+.+-...+.|.
T Consensus       236 ~~~~~~~~~l~~P~glavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~~~~~l~~P~gl~v~-~~~lywtd~~~~~V~  314 (400)
T 3p5b_L          236 DIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVF-EDKVFWTDIINEAIF  314 (400)
T ss_dssp             SCEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCCEEEEECSSTTSSEEEEEEE-TTEEEEEESSSCSEE
T ss_pred             ccEEEEECCCCceEEEEEEeCCCEEEEEECCCCEEEEEeCCCCccEEEEeCCCCCCCCEEEEEe-CCEEEEecCCCCeEE
Confidence            5444444444678999999876655444 5567899999874322211121  22345577763 233344555557777


Q ss_pred             Eee
Q 021247          311 LYE  313 (315)
Q Consensus       311 i~~  313 (315)
                      .++
T Consensus       315 ~~~  317 (400)
T 3p5b_L          315 SAN  317 (400)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            665

>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*

Probab=98.80  E-value=3.7e-06  Score=75.30  Aligned_cols=262  Identities=14%  Similarity=0.154  Sum_probs=148.7

Q ss_pred             EEEeeCCCcEEEEcCCCCcceeeccc--ccc--ceEEEEeCCCCCEEEEee-----CCCeEEEEECCCCceeEEeeCCcc
Q 021247           33 LLTGSLDETVKLWRPDDMQLERTNTG--HCL--GVVSVAAHPSGIIAASAS-----LDSFVRVFDVDTNASIATLEASPS  103 (315)
Q Consensus        33 l~sgs~d~~v~~w~~~~~~~~~~~~~--h~~--~v~~~~~~~~g~~l~s~~-----~d~~i~~w~~~~~~~~~~~~~~~~  103 (315)
                      ++.++.|+.|.-+|..+++.......  +..  .+.+--.-.++.+++..+     .++.|+.+|..+++.+..+.....
T Consensus       124 V~v~t~dg~l~AlDa~TG~~~W~~~~~~~~~~~~~~ssP~v~~g~V~vg~~g~e~g~~g~v~A~D~~TG~~~W~~~~~~~  203 (599)
T 1w6s_A          124 ILKTQLDGNVAALNAETGETVWKVENSDIKVGSTLTIAPYVVKDKVIIGSSGAELGVRGYLTAYDVKTGEQVWRAYATGP  203 (599)
T ss_dssp             EEEECTTSEEEEEETTTCCEEEEEECCCGGGTCBCCSCCEEETTEEEECCBCGGGTCCCEEEEEETTTCCEEEEEESSSC
T ss_pred             EEEEcCCCEEEEEECCCCCEEEeecCCCCCccceeecCCEEECCEEEEEecccccCCCCeEEEEECCCCcEEEEEcCCCC
Confidence            88888999999999988887654321  110  111100001454444332     489999999999998877654321


Q ss_pred             c-------------------------------------EE-EEEECCCCCeEEEEecC---------------CCeEEEE
Q 021247          104 E-------------------------------------VW-QMQFDPKGTTLAVAGGG---------------SASVKLW  130 (315)
Q Consensus       104 ~-------------------------------------v~-~~~~~~~~~~~~~~~~~---------------d~~i~~~  130 (315)
                      .                                     +| ..++++....+++..+.               ...|..+
T Consensus       204 ~~~~~~~p~~~~~~~~~g~~~~g~~tw~g~~~~~gg~~~W~~~a~d~~~g~vy~g~g~~~p~~~~~r~gd~~y~~sv~Al  283 (599)
T 1w6s_A          204 DKDLLLASDFNIKNPHYGQKGLGTGTWEGDAWKIGGGTNWGWYAYDPGTNLIYFGTGNPAPWNETMRPGDNKWTMTIFGR  283 (599)
T ss_dssp             HHHHTBCTTTTTTCGGGCCTTHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTSSEEEEE
T ss_pred             ccccccccccccccccccccccccccCCCcceecCCCccccceeEeCCCCEEEEeCCCCccccCcccCCCccccceEEEE
Confidence            1                                     11 34556666655544332               1479999


Q ss_pred             ecCCcceeeeecCCCCCCCCCCccCCCCcceEEEEEC-CCC---CEEEEecCCCcEEEEEcccceeeeeecCC-------
Q 021247          131 DTATWNLIATLSIPRPEGLKPTDKSSSKKFVLSVAWS-PDG---RRIACGSMDGTISVFDVTRAKFLHHLEGH-------  199 (315)
Q Consensus       131 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~---~~l~~~s~dg~i~i~d~~~~~~~~~~~~~-------  199 (315)
                      |.++++.+..+.......-   .......++. +... .+|   ..++.++.+|.++++|.++++.+-.....       
T Consensus       284 d~~TG~~~W~~q~~~~d~w---d~d~~~~p~l-~d~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~lw~~~~~~~~~~~~  359 (599)
T 1w6s_A          284 DADTGEAKFGYQKTPHDEW---DYAGVNVMML-SEQKDKDGKARKLLTHPDRNGIVYTLDRTDGALVSANKLDDTVNVFK  359 (599)
T ss_dssp             ETTTCCEEEEEESSTTCSS---CCCCCCCCEE-EEEECTTSCEEEEEEEECTTSEEEEEETTTCCEEEEEESSTTCCSEE
T ss_pred             eCCCCceeeEeecCCCccc---cccCCCccEE-EeccccCCcEEEEEEEECCCcEEEEEECCCCCEeecccccCCccccc
Confidence            9999999888765322100   0000111121 2222 466   46777889999999999998876543211       


Q ss_pred             ------ccce--------------------------EEEEEcCCCCcEEEEE----------------------------
Q 021247          200 ------FMPV--------------------------RSLVYSPVDPRVLFSA----------------------------  219 (315)
Q Consensus       200 ------~~~v--------------------------~~~~~~~~~~~~l~s~----------------------------  219 (315)
                            ..++                          ..++++|..+ +++..                            
T Consensus       360 ~~~~~~g~p~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~~-~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~  438 (599)
T 1w6s_A          360 SVDLKTGQPVRDPEYGTRMDHLAKDICPSAMGYHNQGHDSYDPKRE-LFFMGINHICMDWEPFMLPYKAGQFFVGATLNM  438 (599)
T ss_dssp             EECTTTCCEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETTTT-EEEEEEECEEEEEEECCCCCCTTSCCCCEEEEE
T ss_pred             ccccCCCceeeccccCCCCCCCccEeccCcccccCCCCccCCCCCC-EEEEeccccceeeecccccccCCcceeccccee
Confidence                  0111                          1234454322 22221                            


Q ss_pred             -----e------CCCeEEEEeCCCCeeEEEeecccccEEEEEEcCCCCeEEEEeCCCcEEEEecCccceehccccccc-c
Q 021247          220 -----S------DDTHVHMYDAEGKSLVTAMSGHASWVLSVDASPDGAAITTGSSDRTVKLWDLNMRAAMQSMTNHTD-Q  287 (315)
Q Consensus       220 -----~------~d~~i~~wd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~-~  287 (315)
                           +      .++.|.-||+.+++.+=..... .....-.+...+.+++.++.|+.++.||.++++.+-++..... .
T Consensus       439 ~~~p~~~~~~~~~~G~l~A~D~~tG~~~W~~~~~-~~~~~g~~~tagg~vf~gt~dg~l~A~D~~tG~~lW~~~l~~g~~  517 (599)
T 1w6s_A          439 YPGPKGDRQNYEGLGQIKAYNAITGDYKWEKMER-FAVWGGTMATAGDLVFYGTLDGYLKARDSDTGDLLWKFKIPSGAI  517 (599)
T ss_dssp             EECTTSBTTTTBCCEEEEEECTTTCCEEEEEEES-SCCCSBCEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCC
T ss_pred             ccCCcCCcccCCCcCeEEEEECCCCCEEeEecCC-CCccCcceEecCCEEEEECCCCeEEEEECCCCCEEEEeeCCCCcE
Confidence                 1      3478888998888765443211 1111111222456777899999999999999987755543221 1


Q ss_pred             eEEEEEeeCCCEE
Q 021247          288 VWGVSFRPLGGRV  300 (315)
Q Consensus       288 v~~~~~s~~~~~l  300 (315)
                      ..-+.+..+|+..
T Consensus       518 ~~P~~y~~~G~qy  530 (599)
T 1w6s_A          518 GYPMTYTHKGTQY  530 (599)
T ss_dssp             SCCEEEEETTEEE
T ss_pred             eccEEEEeCCEEE
Confidence            1225566777643

>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}

Probab=98.79  E-value=6.2e-05  Score=70.00  Aligned_cols=274  Identities=11%  Similarity=0.101  Sum_probs=163.0

Q ss_pred             cceEEEEEeecCCCCCcEEEEeeCCCcEEEEcCCCCcceeecc--------------ccccceEEEEeCCCCCEEEEeeC
Q 021247           15 ESVWAVTWVPATETRPALLLTGSLDETVKLWRPDDMQLERTNT--------------GHCLGVVSVAAHPSGIIAASASL   80 (315)
Q Consensus        15 ~~v~~v~~~~~~~~~~~~l~sgs~d~~v~~w~~~~~~~~~~~~--------------~h~~~v~~~~~~~~g~~l~s~~~   80 (315)
                      ..|+++...+.     ..|..|...+-|.+++..+.+......              -....|.++...++|.+- .|..
T Consensus       258 ~~i~~i~~d~~-----g~lWigt~~~Gl~~~~~~~~~~~~~~~~~f~~~~~~~~~~~l~~~~v~~i~~D~~g~lW-igt~  331 (781)
T 3v9f_A          258 SYIFSIKQLKD-----NKLWIATELNGIMILDLQQNQFLLPEQIRFEFIREGDNNYSLSNASARYIFQDSFNNIW-IGTW  331 (781)
T ss_dssp             CCEEEEEECTT-----SEEEEEESSSCEEEEETTCC---------CEEECBCSSTTSBSSSCEEEEEECSSCCEE-EEEB
T ss_pred             ceEEEEEECCC-----CCEEEEeCCCCeEEECCCCCeeeeeeccccccccCCCCCCCCCCCeEEEEEEeCCCCEE-EEec
Confidence            45777765433     347777775678888876654322111              123568999999988754 4666


Q ss_pred             CCeEEEEECCCCceeEEee----------CCcccEEEEEECCCCCeEEEEecCCCeEEEEecCCcceeeeecCCCCCCCC
Q 021247           81 DSFVRVFDVDTNASIATLE----------ASPSEVWQMQFDPKGTTLAVAGGGSASVKLWDTATWNLIATLSIPRPEGLK  150 (315)
Q Consensus        81 d~~i~~w~~~~~~~~~~~~----------~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~  150 (315)
                      ++-|..++....... .+.          .....|.++..++++...  .|..++-|..||..+.+.. .+.  .+.   
T Consensus       332 ~~Gl~~~~~~~~~~~-~~~~~~~~~~~~~l~~~~v~~i~~d~~g~lW--igt~~~Gl~~~~~~~~~~~-~~~--~~~---  402 (781)
T 3v9f_A          332 GGGINFISNAPPTFH-TWSYSPTQMNESSLSNKVVSSVCDDGQGKLW--IGTDGGGINVFENGKRVAI-YNK--ENR---  402 (781)
T ss_dssp             SSCEEEECSSCCSCE-EEC----CCCSSCCSSSCEEEEEECTTSCEE--EEEBSSCEEEEETTEEEEE-CC---------
T ss_pred             CCeEEEeCCCCCcce-eeccCccccccCCCCCcceEEEEEcCCCCEE--EEeCCCcEEEEECCCCeEE-Ecc--CCC---
Confidence            677888887765432 221          123568888888877744  3444566888887654322 111  000   


Q ss_pred             CCccCCCCcceEEEEECCCCCEEEEecCCCcEEEEEcccceeeeeec--CCccceEEEEEcCCCCcEEEEEeCCCeEEEE
Q 021247          151 PTDKSSSKKFVLSVAWSPDGRRIACGSMDGTISVFDVTRAKFLHHLE--GHFMPVRSLVYSPVDPRVLFSASDDTHVHMY  228 (315)
Q Consensus       151 ~~~~~~~~~~i~~~~~~~~~~~l~~~s~dg~i~i~d~~~~~~~~~~~--~~~~~v~~~~~~~~~~~~l~s~~~d~~i~~w  228 (315)
                          ......|.++...++++. ..|+.++.+..+|..+++......  .....|.++...+ ++. |..|+. +-|..|
T Consensus       403 ----~~~~~~v~~i~~d~~g~l-Wigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~-~g~-lwigt~-~Gl~~~  474 (781)
T 3v9f_A          403 ----ELLSNSVLCSLKDSEGNL-WFGTYLGNISYYNTRLKKFQIIELEKNELLDVRVFYEDK-NKK-IWIGTH-AGVFVI  474 (781)
T ss_dssp             -----CCCSBEEEEEECTTSCE-EEEETTEEEEEECSSSCEEEECCSTTTCCCCEEEEEECT-TSE-EEEEET-TEEEEE
T ss_pred             ----CCCCcceEEEEECCCCCE-EEEeccCCEEEEcCCCCcEEEeccCCCCCCeEEEEEECC-CCC-EEEEEC-CceEEE
Confidence                112345888888877764 446676789999987766433221  1345688887765 444 444555 568899


Q ss_pred             eCCCCeeEEEeecc-----cccEEEEEEcCCCCeEEEEeCCCcEEEEecCccceehccc---ccccceEEEEEeeCCCEE
Q 021247          229 DAEGKSLVTAMSGH-----ASWVLSVDASPDGAAITTGSSDRTVKLWDLNMRAAMQSMT---NHTDQVWGVSFRPLGGRV  300 (315)
Q Consensus       229 d~~~~~~~~~~~~~-----~~~i~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~---~~~~~v~~~~~s~~~~~l  300 (315)
                      |.++++........     ...|.++..+++|.+.+ |+.++-+..+|.+.++...-..   .....|.++...++|...
T Consensus       475 ~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~lWi-gt~~~Gl~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lW  553 (781)
T 3v9f_A          475 DLASKKVIHHYDTSNSQLLENFVRSIAQDSEGRFWI-GTFGGGVGIYTPDMQLVRKFNQYEGFCSNTINQIYRSSKGQMW  553 (781)
T ss_dssp             ESSSSSCCEEECTTTSSCSCSCEEEEEECTTCCEEE-EESSSCEEEECTTCCEEEEECTTTTCSCSCEEEEEECTTSCEE
T ss_pred             eCCCCeEEecccCcccccccceeEEEEEcCCCCEEE-EEcCCCEEEEeCCCCeEEEccCCCCCCCCeeEEEEECCCCCEE
Confidence            98776544332222     35789999998887544 5553347778876543322111   123568888888888765


Q ss_pred             EEEeCCCcEEEee
Q 021247          301 VSVSDDKSISLYE  313 (315)
Q Consensus       301 ~s~~~d~~i~i~~  313 (315)
                      ++.. +|.|..||
T Consensus       554 i~T~-~Glv~~~d  565 (781)
T 3v9f_A          554 LATG-EGLVCFPS  565 (781)
T ss_dssp             EEET-TEEEEESC
T ss_pred             EEEC-CCceEEEC
Confidence            5544 55535554

>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}

Probab=98.73  E-value=2.8e-05  Score=66.90  Aligned_cols=239  Identities=9%  Similarity=0.052  Sum_probs=137.9

Q ss_pred             ceEEEEEee-cCCCCCcEEEEeeCCCcEEEEcCCCCcceeeccccccceEEEEeCCCCCEEEEeeC-CC----eEEEEEC
Q 021247           16 SVWAVTWVP-ATETRPALLLTGSLDETVKLWRPDDMQLERTNTGHCLGVVSVAAHPSGIIAASASL-DS----FVRVFDV   89 (315)
Q Consensus        16 ~v~~v~~~~-~~~~~~~~l~sgs~d~~v~~w~~~~~~~~~~~~~h~~~v~~~~~~~~g~~l~s~~~-d~----~i~~w~~   89 (315)
                      ....|++.| ...    .|+.+...+.|+.++++...+..... .......++++++|..|..+.. ++    .+...+.
T Consensus       138 ~P~~lavdp~~~g----~Lyv~d~~~~I~~id~~~~~v~~~~~-~~~~P~~ia~d~~G~~lyvad~~~~~~~~~v~~~~~  212 (430)
T 3tc9_A          138 GAVWLSFDPKNHN----HLYLVGEQHPTRLIDFEKEYVSTVYS-GLSKVRTICWTHEADSMIITNDQNNNDRPNNYILTR  212 (430)
T ss_dssp             CCCEEEEETTEEE----EEEEEEBTEEEEEEETTTTEEEEEEC-CCSCEEEEEECTTSSEEEEEECCSCTTSEEEEEEEG
T ss_pred             CCCEEEECCCCCC----eEEEEeCCCcEEEEECCCCEEEEEec-CCCCcceEEEeCCCCEEEEEeCCCCcccceEEEEeC
Confidence            557788886 232    35655555889999987765544333 3446789999999995554443 22    3444443


Q ss_pred             CCCce-eEEeeCCcccEEEEEECCCCCeEEEEecCCCeEEEEecCCcceeeeecCCCCCCCCCCccCCCCcceEEEEECC
Q 021247           90 DTNAS-IATLEASPSEVWQMQFDPKGTTLAVAGGGSASVKLWDTATWNLIATLSIPRPEGLKPTDKSSSKKFVLSVAWSP  168 (315)
Q Consensus        90 ~~~~~-~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~  168 (315)
                      ..... ...+.. ......++++|++..++++-..++.|..+|..............            ......++|+|
T Consensus       213 ~g~~~~~~~l~~-~~~p~giavdp~~g~lyv~d~~~~~V~~~~~~~~~~~~~~~~~~------------~~~P~gia~~p  279 (430)
T 3tc9_A          213 ESGFKVITELTK-GQNCNGAETHPINGELYFNSWNAGQVFRYDFTTQETTPLFTIQD------------SGWEFHIQFHP  279 (430)
T ss_dssp             GGTSCSEEEEEE-CSSCCCEEECTTTCCEEEEETTTTEEEEEETTTTEEEEEEECSS------------SSCCEEEEECT
T ss_pred             CCceeeeeeecc-CCCceEEEEeCCCCEEEEEECCCCEEEEEECCCCcEEEEEEcCC------------CCcceeEEEcC
Confidence            32211 122221 23345778999555577777778899999987654322221111            12356899999


Q ss_pred             CCCEE-EEecCCCcEEEEEccc--cee--eeeecC---------------CccceE-EEEEcC-------CCCcEEEEEe
Q 021247          169 DGRRI-ACGSMDGTISVFDVTR--AKF--LHHLEG---------------HFMPVR-SLVYSP-------VDPRVLFSAS  220 (315)
Q Consensus       169 ~~~~l-~~~s~dg~i~i~d~~~--~~~--~~~~~~---------------~~~~v~-~~~~~~-------~~~~~l~s~~  220 (315)
                      +|++| ++-...+.|..++...  ++.  ...+.+               ...... .+...+       .++.++++-.
T Consensus       280 dG~~lyv~d~~~~~I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~~gv~v~~~~y~~~D~~g~lyvaD~  359 (430)
T 3tc9_A          280 SGNYAYIVVVNQHYILRSDYDWKTKRLTTPYIVCGQQGAKDWVDGVGKKARMHAPRQGTFVKNPAYKGSSDEYDFYFCDR  359 (430)
T ss_dssp             TSSEEEEEETTTTEEEEEEEETTTTEECCCEEEEECTTCBCCBCEEGGGCBBSSEEEEEEEECGGGTTSSCCEEEEEEEG
T ss_pred             CCCEEEEEECCCCEEEEEeCCcccccccceEEEeccCCCCCCCCCCCcceEeCCCcceEEEccccccccCCCCeEEEEEC
Confidence            99954 5566788899988653  221  111111               011123 344432       1345566656


Q ss_pred             CCCeEEEEeCCCCeeEEEeec-----------------ccccEEEEEEcC-CCCeEEEEeCCCcEEEEecC
Q 021247          221 DDTHVHMYDAEGKSLVTAMSG-----------------HASWVLSVDASP-DGAAITTGSSDRTVKLWDLN  273 (315)
Q Consensus       221 ~d~~i~~wd~~~~~~~~~~~~-----------------~~~~i~~~~~~~-~~~~l~s~~~d~~i~iwd~~  273 (315)
                      ..+.|+.++.. +.+......                 .-.....++++| ++.++++-..+++|+.++++
T Consensus       360 ~n~~I~~i~~~-G~v~~~~g~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g~lyVaD~~n~rIr~i~~e  429 (430)
T 3tc9_A          360 ENHCIRILTPQ-GRVTTFAGRGSNGTSGYNDGDLRQEARFNHPEGIVYDEERECFFIGDRENRRIRKIGYE  429 (430)
T ss_dssp             GGTEEEEECTT-SEEEEEEECCTTSSSSCBCEETTTTCBCSSEEEEEEETTTTEEEEEEGGGTEEEEEEEC
T ss_pred             CCcEEEEECCC-CcEEEEEeCCCCCCCcccCCCchhhcEeCCCcEEEEECCCCEEEEEECCCCeEEEEccC
Confidence            67888888854 333222211                 012578999999 46666666667788887653

>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}

Probab=98.73  E-value=0.00017  Score=67.08  Aligned_cols=280  Identities=13%  Similarity=0.096  Sum_probs=161.4

Q ss_pred             cceEEEEEeecCCCCCcEEEEeeCCCcEEEEcCCCCcceeeccc-------cccceEEEEeCCCCCEEEEeeCCCeEEEE
Q 021247           15 ESVWAVTWVPATETRPALLLTGSLDETVKLWRPDDMQLERTNTG-------HCLGVVSVAAHPSGIIAASASLDSFVRVF   87 (315)
Q Consensus        15 ~~v~~v~~~~~~~~~~~~l~sgs~d~~v~~w~~~~~~~~~~~~~-------h~~~v~~~~~~~~g~~l~s~~~d~~i~~w   87 (315)
                      ..|.++...+.+     .|..|..+ -+.+|+..+.+.......       ....|.++...++|.+.+ |...+-|.++
T Consensus       211 ~~i~~i~~d~~g-----~lwigt~~-Gl~~~d~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWi-gt~~~Gl~~~  283 (781)
T 3v9f_A          211 NDVRCIYKDTNG-----NIWIGTSK-GLALFNANTETFTNFHNNPGNIHGALSSYIFSIKQLKDNKLWI-ATELNGIMIL  283 (781)
T ss_dssp             SSEEEEEECTTC-----CEEEEETT-EEEEEETTTTEEEC-----------CCCCEEEEEECTTSEEEE-EESSSCEEEE
T ss_pred             CceeEEEEcCCC-----CEEEEeCC-cHheECCCCCcEEEEEcCCCccccccCceEEEEEECCCCCEEE-EeCCCCeEEE
Confidence            356666544333     35666655 688898766554332111       234689999988887655 4554568888


Q ss_pred             ECCCCceeEEee--------------CCcccEEEEEECCCCCeEEEEecCCCeEEEEecCCcceeeeecCCCCCCCCCCc
Q 021247           88 DVDTNASIATLE--------------ASPSEVWQMQFDPKGTTLAVAGGGSASVKLWDTATWNLIATLSIPRPEGLKPTD  153 (315)
Q Consensus        88 ~~~~~~~~~~~~--------------~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~  153 (315)
                      +..+........              .....|.++..++++..-  .|..++-|..++........ +....... .  .
T Consensus       284 ~~~~~~~~~~~~~~f~~~~~~~~~~~l~~~~v~~i~~D~~g~lW--igt~~~Gl~~~~~~~~~~~~-~~~~~~~~-~--~  357 (781)
T 3v9f_A          284 DLQQNQFLLPEQIRFEFIREGDNNYSLSNASARYIFQDSFNNIW--IGTWGGGINFISNAPPTFHT-WSYSPTQM-N--E  357 (781)
T ss_dssp             ETTCC---------CEEECBCSSTTSBSSSCEEEEEECSSCCEE--EEEBSSCEEEECSSCCSCEE-EC----CC-C--S
T ss_pred             CCCCCeeeeeeccccccccCCCCCCCCCCCeEEEEEEeCCCCEE--EEecCCeEEEeCCCCCccee-eccCcccc-c--c
Confidence            987654321111              123568899888887743  34556778888876543222 21100000 0  0


Q ss_pred             cCCCCcceEEEEECCCCCEEEEecCCCcEEEEEcccceeeeee---cCCccceEEEEEcCCCCcEEEEEeCCCeEEEEeC
Q 021247          154 KSSSKKFVLSVAWSPDGRRIACGSMDGTISVFDVTRAKFLHHL---EGHFMPVRSLVYSPVDPRVLFSASDDTHVHMYDA  230 (315)
Q Consensus       154 ~~~~~~~i~~~~~~~~~~~l~~~s~dg~i~i~d~~~~~~~~~~---~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~  230 (315)
                      .......|.++...++|+ |..|+.++.+..||..+++.....   ......|.++...+ ++. |..|+.++-|..+|.
T Consensus       358 ~~l~~~~v~~i~~d~~g~-lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~-~g~-lWigt~~~Gl~~~~~  434 (781)
T 3v9f_A          358 SSLSNKVVSSVCDDGQGK-LWIGTDGGGINVFENGKRVAIYNKENRELLSNSVLCSLKDS-EGN-LWFGTYLGNISYYNT  434 (781)
T ss_dssp             SCCSSSCEEEEEECTTSC-EEEEEBSSCEEEEETTEEEEECC-----CCCSBEEEEEECT-TSC-EEEEETTEEEEEECS
T ss_pred             CCCCCcceEEEEEcCCCC-EEEEeCCCcEEEEECCCCeEEEccCCCCCCCcceEEEEECC-CCC-EEEEeccCCEEEEcC
Confidence            011234588898888765 556666677999998765432211   12335688887765 344 455677677999998


Q ss_pred             CCCeeEEEee--cccccEEEEEEcCCCCeEEEEeCCCcEEEEecCccceehcccc-----cccceEEEEEeeCCCEEEEE
Q 021247          231 EGKSLVTAMS--GHASWVLSVDASPDGAAITTGSSDRTVKLWDLNMRAAMQSMTN-----HTDQVWGVSFRPLGGRVVSV  303 (315)
Q Consensus       231 ~~~~~~~~~~--~~~~~i~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~-----~~~~v~~~~~s~~~~~l~s~  303 (315)
                      ++++......  .....|.++..++++.+ ..|+. +-+..+|..+++.......     ....|.++...++|...++.
T Consensus       435 ~~~~~~~~~~~~~~~~~v~~i~~d~~g~l-wigt~-~Gl~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~lWigt  512 (781)
T 3v9f_A          435 RLKKFQIIELEKNELLDVRVFYEDKNKKI-WIGTH-AGVFVIDLASKKVIHHYDTSNSQLLENFVRSIAQDSEGRFWIGT  512 (781)
T ss_dssp             SSCEEEECCSTTTCCCCEEEEEECTTSEE-EEEET-TEEEEEESSSSSCCEEECTTTSSCSCSCEEEEEECTTCCEEEEE
T ss_pred             CCCcEEEeccCCCCCCeEEEEEECCCCCE-EEEEC-CceEEEeCCCCeEEecccCcccccccceeEEEEEcCCCCEEEEE
Confidence            7765443221  13457889988888764 44555 4588898876543221111     13578889888888765554


Q ss_pred             eCCCcEEEee
Q 021247          304 SDDKSISLYE  313 (315)
Q Consensus       304 ~~d~~i~i~~  313 (315)
                      ..+| +..|+
T Consensus       513 ~~~G-l~~~~  521 (781)
T 3v9f_A          513 FGGG-VGIYT  521 (781)
T ss_dssp             SSSC-EEEEC
T ss_pred             cCCC-EEEEe
Confidence            4344 44444

>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A

Probab=98.68  E-value=1.2e-06  Score=79.88  Aligned_cols=236  Identities=17%  Similarity=0.163  Sum_probs=128.8

Q ss_pred             EEEeCC-CCCEEEEeeCCC-----------eEEEEECCCCcee--EEeeC-CcccEEEEEECCCCCeEEEEec-CCCeEE
Q 021247           65 SVAAHP-SGIIAASASLDS-----------FVRVFDVDTNASI--ATLEA-SPSEVWQMQFDPKGTTLAVAGG-GSASVK  128 (315)
Q Consensus        65 ~~~~~~-~g~~l~s~~~d~-----------~i~~w~~~~~~~~--~~~~~-~~~~v~~~~~~~~~~~~~~~~~-~d~~i~  128 (315)
                      ..++.+ +|++++.|+.+.           .+.+||+.+++..  ..... +......+++.+++..+ +.|+ .+..+.
T Consensus       190 ~~av~~~~g~l~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~~~g~ly-v~GG~~~~~v~  268 (656)
T 1k3i_A          190 AAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKHDMFCPGISMDGNGQIV-VTGGNDAKKTS  268 (656)
T ss_dssp             EEEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECSCCCSSCEEEECTTSCEE-EECSSSTTCEE
T ss_pred             eEEEEecCCEEEEEecccccccccCCCCeEEEEEEeCCCCcEEeCcccCCCCCCccccccCCCCCCEE-EeCCCCCCceE
Confidence            345556 788888887653           5889999887532  22211 22223345666777754 4555 556899


Q ss_pred             EEecCCcceeeeecCCCCCCCCCCccCCCCcceEEEEECCCCCEEEEec-CC-----CcEEEEEcccceeeeeecCCccc
Q 021247          129 LWDTATWNLIATLSIPRPEGLKPTDKSSSKKFVLSVAWSPDGRRIACGS-MD-----GTISVFDVTRAKFLHHLEGHFMP  202 (315)
Q Consensus       129 ~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~s-~d-----g~i~i~d~~~~~~~~~~~~~~~~  202 (315)
                      +||..+.+....-.++.            ...-.+++..++++.++.|+ .+     ..+.+||+.+++....-.....+
T Consensus       269 ~yd~~t~~W~~~~~~~~------------~R~~~s~~~~~dg~iyv~GG~~~~~~~~~~~e~yd~~t~~W~~~~~~~~~p  336 (656)
T 1k3i_A          269 LYDSSSDSWIPGPDMQV------------ARGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSKTWTSLPNAKVNP  336 (656)
T ss_dssp             EEEGGGTEEEECCCCSS------------CCSSCEEEECTTSCEEEECCCCCSSSCCCCEEEEETTTTEEEEETTSCSGG
T ss_pred             EecCcCCceeECCCCCc------------cccccceEEecCCeEEEEeCcccCCcccccceEeCCCCCcceeCCCccccc
Confidence            99988765443211111            01123556667889888887 34     46999999877654320000000


Q ss_pred             eE----EEEEcCCCCcEEEEEeCC---------CeEEEEeCCCCeeEEEeecccc---------cEEEEEEcC-CCCeEE
Q 021247          203 VR----SLVYSPVDPRVLFSASDD---------THVHMYDAEGKSLVTAMSGHAS---------WVLSVDASP-DGAAIT  259 (315)
Q Consensus       203 v~----~~~~~~~~~~~l~s~~~d---------~~i~~wd~~~~~~~~~~~~~~~---------~i~~~~~~~-~~~~l~  259 (315)
                      ..    ...+. .++++++.++.+         ..+..||.+...-......+..         .-.++.+.. ++++++
T Consensus       337 ~~~~~~~~~~~-~~~~iyv~Gg~~g~~~~~~~~~~v~~yd~~~~~w~~~~~~~~~~~~~~~~~~~~~av~~~~~~~~i~v  415 (656)
T 1k3i_A          337 MLTADKQGLYR-SDNHAWLFGWKKGSVFQAGPSTAMNWYYTSGSGDVKSAGKRQSNRGVAPDAMCGNAVMYDAVKGKILT  415 (656)
T ss_dssp             GCCCCTTGGGT-TTCSCCEEECGGGCEEECCSSSEEEEEECSTTCEEEEEEECEETTEECCCCBTCEEEEEETTTTEEEE
T ss_pred             cccccccceee-cCCceEEEECCCCcEEEecCccceeeeecCCcceeecCCccccccccCCCCCCCceEeccCCCCeEEE
Confidence            00    00011 134444555443         3567888876543332222211         123344433 677888


Q ss_pred             EEeCCC-----------cEEEEecCccceehcc--cccccc-eEEEEEeeCCCEEEEEeCC-----------CcEEEeec
Q 021247          260 TGSSDR-----------TVKLWDLNMRAAMQSM--TNHTDQ-VWGVSFRPLGGRVVSVSDD-----------KSISLYEY  314 (315)
Q Consensus       260 s~~~d~-----------~i~iwd~~~~~~~~~~--~~~~~~-v~~~~~s~~~~~l~s~~~d-----------~~i~i~~~  314 (315)
                      .|+.++           .|.+||..+..-....  ..+... -.+++..|+|+.++.+|.+           ..+.+||.
T Consensus       416 ~GG~~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~mp~~R~~~~~~~l~~g~i~v~GG~~~~~~~~~~~~~~~v~~ydp  495 (656)
T 1k3i_A          416 FGGSPDYQDSDATTNAHIITLGEPGTSPNTVFASNGLYFARTFHTSVVLPDGSTFITGGQRRGIPFEDSTPVFTPEIYVP  495 (656)
T ss_dssp             ECCBSSSSSSBCCCCEEEEECCSTTSCCEEEECTTCCSSCCBSCEEEECTTSCEEEECCBSBCCTTCCCSBCCCCEEEEG
T ss_pred             EeCCCCCCCCCcCCcceEEEcCCCCCCCeeEEccCCCCCCcccCCeEECCCCCEEEECCcccCcCcCCCCcccceEEEcC
Confidence            888543           5778887654322111  111222 2345667899999998865           46788875

>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}

Probab=98.68  E-value=5.2e-05  Score=65.30  Aligned_cols=235  Identities=11%  Similarity=0.062  Sum_probs=140.8

Q ss_pred             ceEEEEeCCC---CCEEEEeeCCCeEEEEECCCCceeEEeeCCcccEEEEEECCCCCeEEEEecCC---Ce-EEEEecCC
Q 021247           62 GVVSVAAHPS---GIIAASASLDSFVRVFDVDTNASIATLEASPSEVWQMQFDPKGTTLAVAGGGS---AS-VKLWDTAT  134 (315)
Q Consensus        62 ~v~~~~~~~~---g~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d---~~-i~~~d~~~  134 (315)
                      ....++++|+   |.++++-.. +.|+.++..++.... +.........++++++++ ++++....   .. +...+...
T Consensus       140 ~P~gvavd~~s~~g~Lyv~D~~-~~I~~id~~~g~v~~-~~~~~~~P~giavd~dG~-lyVad~~~~~~~~gv~~~~~~~  216 (433)
T 4hw6_A          140 NIWRMMFDPNSNYDDLYWVGQR-DAFRHVDFVNQYVDI-KTTNIGQCADVNFTLNGD-MVVVDDQSSDTNTGIYLFTRAS  216 (433)
T ss_dssp             CCCEEEECTTTTTCEEEEECBT-SCEEEEETTTTEEEE-ECCCCSCEEEEEECTTCC-EEEEECCSCTTSEEEEEECGGG
T ss_pred             CCceEEEccccCCCEEEEEeCC-CCEEEEECCCCEEEE-eecCCCCccEEEECCCCC-EEEEcCCCCcccceEEEEECCC
Confidence            3568889984   665555433 889999987765543 333445688999999998 65654321   11 22222211


Q ss_pred             cceeeeecCCCCCCCCCCccCCCCcceEEEEECC-CCCEEEEecCCCcEEEEEcccceeeeee-c-CCccceEEEEEcCC
Q 021247          135 WNLIATLSIPRPEGLKPTDKSSSKKFVLSVAWSP-DGRRIACGSMDGTISVFDVTRAKFLHHL-E-GHFMPVRSLVYSPV  211 (315)
Q Consensus       135 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~s~dg~i~i~d~~~~~~~~~~-~-~~~~~v~~~~~~~~  211 (315)
                       ........            ..-.....++++| ++++.++-..++.|+.+|..++.....+ . +.......++|+|.
T Consensus       217 -~~~~~~~~------------~~~~~P~giavd~~~G~lyv~d~~~~~V~~~d~~~g~~~~~~~~~~~~~~~~~ia~dpd  283 (433)
T 4hw6_A          217 -GFTERLSL------------CNARGAKTCAVHPQNGKIYYTRYHHAMISSYDPATGTLTEEEVMMDTKGSNFHIVWHPT  283 (433)
T ss_dssp             -TTCCEEEE------------EECSSBCCCEECTTTCCEEECBTTCSEEEEECTTTCCEEEEEEECSCCSSCEEEEECTT
T ss_pred             -Ceeccccc------------cccCCCCEEEEeCCCCeEEEEECCCCEEEEEECCCCeEEEEEeccCCCCCcccEEEeCC
Confidence             11000000            0011245688999 6776677777889999998766552222 1 11122346999996


Q ss_pred             CCcEEEEEeCCCeEEEEeCC--CCee--EEEeec---------------ccccEEEEEE---------cCCCCeEEEEeC
Q 021247          212 DPRVLFSASDDTHVHMYDAE--GKSL--VTAMSG---------------HASWVLSVDA---------SPDGAAITTGSS  263 (315)
Q Consensus       212 ~~~~l~s~~~d~~i~~wd~~--~~~~--~~~~~~---------------~~~~i~~~~~---------~~~~~~l~s~~~  263 (315)
                      +..++++-...+.|+.++..  ++.+  ...+.+               .-.....+++         .+++.+.++-..
T Consensus       284 G~~LYvad~~~~~I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~giav~~n~~y~~dd~~g~lyvaD~~  363 (433)
T 4hw6_A          284 GDWAYIIYNGKHCIYRVDYNRETGKLAVPYIVCGQHSSPGWVDGMGTGARLWGPNQGIFVKNEAYAGEEDEYDFYFCDRD  363 (433)
T ss_dssp             SSEEEEEETTTTEEEEEEBCTTTCCBCCCEEEEECTTCCCCBCEEGGGSBCSSEEEEEEEECGGGTTSSCCEEEEEEETT
T ss_pred             CCEEEEEeCCCCEEEEEeCCCCCcccCcEEEEEecCCCCccCCCcccceEEcCCccEEEEccccccccCCCCcEEEEECC
Confidence            55577777778899998754  2221  111111               1234677898         777877777777


Q ss_pred             CCcEEEEecCccceehcccc------------------cccceEEEEEe-eCCCEEEEEeCCCcEEEeec
Q 021247          264 DRTVKLWDLNMRAAMQSMTN------------------HTDQVWGVSFR-PLGGRVVSVSDDKSISLYEY  314 (315)
Q Consensus       264 d~~i~iwd~~~~~~~~~~~~------------------~~~~v~~~~~s-~~~~~l~s~~~d~~i~i~~~  314 (315)
                      ++.|+.++.. +.. .++.+                  .-....+++++ ++|..+++=....+|+.+++
T Consensus       364 n~~I~~~~~~-G~v-~t~~G~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g~lyVaD~~n~rIr~i~~  431 (433)
T 4hw6_A          364 SHTVRVLTPE-GRV-TTYAGRGNSREWGYVDGELRSQALFNHPTSIAYDMKRKCFYIGDCDNHRVRKIAP  431 (433)
T ss_dssp             TTEEEEECTT-SEE-EEEECCCTTCSSCCBCEETTTTCBCSSEEEEEEETTTTEEEEEEGGGTEEEEEEE
T ss_pred             CCEEEEECCC-CCE-EEEEeCCCCCccccCCCccccccEeCCCcEEEEECCCCEEEEEeCCCCEEEEEec
Confidence            8889999853 322 22211                  11347899999 66666666666788888775

>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}

Probab=98.64  E-value=8.2e-05  Score=58.82  Aligned_cols=206  Identities=11%  Similarity=0.121  Sum_probs=132.3

Q ss_pred             eccccccceEEEEeCCCCC-EEEEeeCCCeEEEEECCCCceeEEeeCC-cccEEEEEECCCCCeEEEEecCCCeEEEEec
Q 021247           55 TNTGHCLGVVSVAAHPSGI-IAASASLDSFVRVFDVDTNASIATLEAS-PSEVWQMQFDPKGTTLAVAGGGSASVKLWDT  132 (315)
Q Consensus        55 ~~~~h~~~v~~~~~~~~g~-~l~s~~~d~~i~~w~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~~~~~~~~d~~i~~~d~  132 (315)
                      .+++-...+..++++|++. +++....++.|...|.. ++.+..+... ......+++.+++. ++++...++.+.++++
T Consensus        21 ~l~g~~~~lSGla~~~~~~~L~aV~d~~~~I~~ld~~-g~v~~~i~l~g~~D~EGIa~~~~g~-~~vs~E~~~~l~~~~v   98 (255)
T 3qqz_A           21 EIAGITNNISSLTWSAQSNTLFSTINKPAAIVEMTTN-GDLIRTIPLDFVKDLETIEYIGDNQ-FVISDERDYAIYVISL   98 (255)
T ss_dssp             ECTTCCSCEEEEEEETTTTEEEEEEETTEEEEEEETT-CCEEEEEECSSCSSEEEEEECSTTE-EEEEETTTTEEEEEEE
T ss_pred             ECCCcccCcceeEEeCCCCEEEEEECCCCeEEEEeCC-CCEEEEEecCCCCChHHeEEeCCCE-EEEEECCCCcEEEEEc
Confidence            4555556789999999765 55557778889999987 7766666432 24677888888775 5556667788999987


Q ss_pred             CCccee---eeecCCCCCCCCCCccCCCCcceEEEEECCCCCEEEEecCCCcEEEEEcc---cceeeeee-------cCC
Q 021247          133 ATWNLI---ATLSIPRPEGLKPTDKSSSKKFVLSVAWSPDGRRIACGSMDGTISVFDVT---RAKFLHHL-------EGH  199 (315)
Q Consensus       133 ~~~~~~---~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~s~dg~i~i~d~~---~~~~~~~~-------~~~  199 (315)
                      .....+   ....++..       ....+.-...++|+|.++.|.++.+.....+|.+.   ....+..+       ..+
T Consensus        99 ~~~~~i~~~~~~~~~~~-------~~~~N~g~EGLA~d~~~~~L~va~E~~p~~i~~~~g~~~~~~l~i~~~~~~~~~~~  171 (255)
T 3qqz_A           99 TPNSEVKILKKIKIPLQ-------ESPTNCGFEGLAYSRQDHTFWFFKEKNPIEVYKVNGLLSSNELHISKDKALQRQFT  171 (255)
T ss_dssp             CTTCCEEEEEEEECCCS-------SCCCSSCCEEEEEETTTTEEEEEEESSSEEEEEEESTTCSSCCEEEECHHHHHTCC
T ss_pred             CCCCeeeeeeeeccccc-------cccccCCcceEEEeCCCCEEEEEECcCCceEEEEcccccCCceeeecchhhccccc
Confidence            654322   22221100       01123337899999998877766655444444442   11111111       112


Q ss_pred             ccceEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCeeEEEee---cc------cccEEEEEEcCCCCeEEEEeCCCcEEEE
Q 021247          200 FMPVRSLVYSPVDPRVLFSASDDTHVHMYDAEGKSLVTAMS---GH------ASWVLSVDASPDGAAITTGSSDRTVKLW  270 (315)
Q Consensus       200 ~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~---~~------~~~i~~~~~~~~~~~l~s~~~d~~i~iw  270 (315)
                      .....+++++|..+++++.+...+.|.++|.++. .+..+.   +.      -...-.|+++++|++.++ +.-+.++.|
T Consensus       172 ~~d~S~l~~dp~tg~lliLS~~s~~L~~~d~~g~-~~~~~~L~~g~~~l~~~~~qpEGia~d~~G~lyIv-sE~n~~y~f  249 (255)
T 3qqz_A          172 LDDVSGAEFNQQKNTLLVLSHESRALQEVTLVGE-VIGEMSLTKGSRGLSHNIKQAEGVAMDASGNIYIV-SEPNRFYRF  249 (255)
T ss_dssp             SSCCCEEEEETTTTEEEEEETTTTEEEEECTTCC-EEEEEECSTTGGGCSSCCCSEEEEEECTTCCEEEE-ETTTEEEEE
T ss_pred             cCCceeEEEcCCCCeEEEEECCCCeEEEEcCCCC-EEEEEEcCCccCCcccccCCCCeeEECCCCCEEEE-cCCceEEEE
Confidence            3356789999988888888888999999998865 444432   11      125678999999985554 666656555


Q ss_pred             e
Q 021247          271 D  271 (315)
Q Consensus       271 d  271 (315)
                      .
T Consensus       250 ~  250 (255)
T 3qqz_A          250 T  250 (255)
T ss_dssp             E
T ss_pred             E
Confidence            3

>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}

Probab=98.63  E-value=7.4e-05  Score=64.33  Aligned_cols=240  Identities=12%  Similarity=0.104  Sum_probs=140.1

Q ss_pred             ceEEEEEeec-CCCCCcEEEEeeCCCcEEEEcCCCCcceeeccccccceEEEEeCCCCCEEEEeeCC---C-eEEEEECC
Q 021247           16 SVWAVTWVPA-TETRPALLLTGSLDETVKLWRPDDMQLERTNTGHCLGVVSVAAHPSGIIAASASLD---S-FVRVFDVD   90 (315)
Q Consensus        16 ~v~~v~~~~~-~~~~~~~l~sgs~d~~v~~w~~~~~~~~~~~~~h~~~v~~~~~~~~g~~l~s~~~d---~-~i~~w~~~   90 (315)
                      ...+|+|.|. ..   ..|+.+...+.|+.+++.+..+.... ........++++++|.++++-...   . .+...+..
T Consensus       140 ~P~gvavd~~s~~---g~Lyv~D~~~~I~~id~~~g~v~~~~-~~~~~P~giavd~dG~lyVad~~~~~~~~gv~~~~~~  215 (433)
T 4hw6_A          140 NIWRMMFDPNSNY---DDLYWVGQRDAFRHVDFVNQYVDIKT-TNIGQCADVNFTLNGDMVVVDDQSSDTNTGIYLFTRA  215 (433)
T ss_dssp             CCCEEEECTTTTT---CEEEEECBTSCEEEEETTTTEEEEEC-CCCSCEEEEEECTTCCEEEEECCSCTTSEEEEEECGG
T ss_pred             CCceEEEccccCC---CEEEEEeCCCCEEEEECCCCEEEEee-cCCCCccEEEECCCCCEEEEcCCCCcccceEEEEECC
Confidence            4678888874 11   13555544488999998766654443 234458899999999965554321   1 13333322


Q ss_pred             CCce-eEEeeCCcccEEEEEECCCCCeEEEEecCCCeEEEEecCCcceeeeecCCCCCCCCCCccCCCCcceEEEEECCC
Q 021247           91 TNAS-IATLEASPSEVWQMQFDPKGTTLAVAGGGSASVKLWDTATWNLIATLSIPRPEGLKPTDKSSSKKFVLSVAWSPD  169 (315)
Q Consensus        91 ~~~~-~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~  169 (315)
                      .+.. ...+. .......++++|.+..++++-..++.|+.+|..++.....+.....           ......++|+|+
T Consensus       216 ~~~~~~~~~~-~~~~P~giavd~~~G~lyv~d~~~~~V~~~d~~~g~~~~~~~~~~~-----------~~~~~~ia~dpd  283 (433)
T 4hw6_A          216 SGFTERLSLC-NARGAKTCAVHPQNGKIYYTRYHHAMISSYDPATGTLTEEEVMMDT-----------KGSNFHIVWHPT  283 (433)
T ss_dssp             GTTCCEEEEE-ECSSBCCCEECTTTCCEEECBTTCSEEEEECTTTCCEEEEEEECSC-----------CSSCEEEEECTT
T ss_pred             CCeecccccc-ccCCCCEEEEeCCCCeEEEEECCCCEEEEEECCCCeEEEEEeccCC-----------CCCcccEEEeCC
Confidence            2211 01111 1233456788994455666666778999999876655222211000           011246999999


Q ss_pred             CCEE-EEecCCCcEEEEEcc--cceee--eeecC---------------CccceEEEEEc--------CCCCcEEEEEeC
Q 021247          170 GRRI-ACGSMDGTISVFDVT--RAKFL--HHLEG---------------HFMPVRSLVYS--------PVDPRVLFSASD  221 (315)
Q Consensus       170 ~~~l-~~~s~dg~i~i~d~~--~~~~~--~~~~~---------------~~~~v~~~~~~--------~~~~~~l~s~~~  221 (315)
                      +++| ++-...+.|+.+++.  ++...  ..+.+               .......+++.        ..++.++++-..
T Consensus       284 G~~LYvad~~~~~I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~giav~~n~~y~~dd~~g~lyvaD~~  363 (433)
T 4hw6_A          284 GDWAYIIYNGKHCIYRVDYNRETGKLAVPYIVCGQHSSPGWVDGMGTGARLWGPNQGIFVKNEAYAGEEDEYDFYFCDRD  363 (433)
T ss_dssp             SSEEEEEETTTTEEEEEEBCTTTCCBCCCEEEEECTTCCCCBCEEGGGSBCSSEEEEEEEECGGGTTSSCCEEEEEEETT
T ss_pred             CCEEEEEeCCCCEEEEEeCCCCCcccCcEEEEEecCCCCccCCCcccceEEcCCccEEEEccccccccCCCCcEEEEECC
Confidence            9854 556677899998864  22211  11111               12235678882        235667777777


Q ss_pred             CCeEEEEeCCCCeeEEEeecc------------------cccEEEEEEc-CCCCeEEEEeCCCcEEEEecC
Q 021247          222 DTHVHMYDAEGKSLVTAMSGH------------------ASWVLSVDAS-PDGAAITTGSSDRTVKLWDLN  273 (315)
Q Consensus       222 d~~i~~wd~~~~~~~~~~~~~------------------~~~i~~~~~~-~~~~~l~s~~~d~~i~iwd~~  273 (315)
                      .+.|+.++.. +.+. .+.+.                  -.....|+++ +++.++++-..+++|+.++++
T Consensus       364 n~~I~~~~~~-G~v~-t~~G~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g~lyVaD~~n~rIr~i~~e  432 (433)
T 4hw6_A          364 SHTVRVLTPE-GRVT-TYAGRGNSREWGYVDGELRSQALFNHPTSIAYDMKRKCFYIGDCDNHRVRKIAPE  432 (433)
T ss_dssp             TTEEEEECTT-SEEE-EEECCCTTCSSCCBCEETTTTCBCSSEEEEEEETTTTEEEEEEGGGTEEEEEEEC
T ss_pred             CCEEEEECCC-CCEE-EEEeCCCCCccccCCCccccccEeCCCcEEEEECCCCEEEEEeCCCCEEEEEecC
Confidence            8899999864 3332 22211                  1347789999 677776766677788887754

>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*

Probab=98.63  E-value=0.00026  Score=63.82  Aligned_cols=223  Identities=9%  Similarity=-0.041  Sum_probs=143.7

Q ss_pred             CCCcEEEEcCCCCcceeecc-ccccceEEEEeCCC-CCEEEEeeCCCeEEEEECCCCceeEEeeCCcccEEEEEECCCCC
Q 021247           38 LDETVKLWRPDDMQLERTNT-GHCLGVVSVAAHPS-GIIAASASLDSFVRVFDVDTNASIATLEASPSEVWQMQFDPKGT  115 (315)
Q Consensus        38 ~d~~v~~w~~~~~~~~~~~~-~h~~~v~~~~~~~~-g~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~v~~~~~~~~~~  115 (315)
                      ....|+..+++.......++ ..-..+..+++++. +.++++-..++.|+.+++........+.........+++++.+.
T Consensus        13 ~~~~I~~i~l~~~~~~~~~~~~~~~~~~~l~~d~~~~~lywtD~~~~~I~r~~~~g~~~~~v~~~g~~~P~GlAvD~~~~   92 (628)
T 4a0p_A           13 RRADIRRISLETNNNNVAIPLTGVKEASALDFDVTDNRIYWTDISLKTISRAFMNGSALEHVVEFGLDYPEGMAVDWLGK   92 (628)
T ss_dssp             ETTEEEEEESSCTTCEEECCCCSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCEEEEETTTT
T ss_pred             eCCcEEEEECCCCCcceEEEcCCCCceEEEEEECCCCEEEEEECCCCeEEEEECCCCCcEEEEeCCCCCcceEEEEeCCC
Confidence            56788888887654333222 12245778999985 45566666788999999876544444443334566888888878


Q ss_pred             eEEEEecCCCeEEEEecCCcceeeeecCCCCCCCCCCccCCCCcceEEEEECCCCCEE-EEe-cCCCcEEEEEcccceee
Q 021247          116 TLAVAGGGSASVKLWDTATWNLIATLSIPRPEGLKPTDKSSSKKFVLSVAWSPDGRRI-ACG-SMDGTISVFDVTRAKFL  193 (315)
Q Consensus       116 ~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l-~~~-s~dg~i~i~d~~~~~~~  193 (315)
                      .++++-...+.|.+.++........+.             ..-.....++++|....| .+- +..+.|...++......
T Consensus        93 ~LY~tD~~~~~I~v~~~dG~~~~~l~~-------------~~l~~P~~iavdp~~G~lY~tD~g~~~~I~r~~~dG~~~~  159 (628)
T 4a0p_A           93 NLYWADTGTNRIEVSKLDGQHRQVLVW-------------KDLDSPRALALDPAEGFMYWTEWGGKPKIDRAAMDGSERT  159 (628)
T ss_dssp             EEEEEETTTTEEEEEETTSTTCEEEEC-------------SSCCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCE
T ss_pred             EEEEEECCCCEEEEEecCCCcEEEEEe-------------CCCCCcccEEEccCCCeEEEeCCCCCCEEEEEeCCCCceE
Confidence            788887778899999986533211110             011225799999854444 443 23567888887543322


Q ss_pred             eeecCCccceEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCeeEEEeecccccEEEEEEcCCCCeEEEEeCCCcEEEEecC
Q 021247          194 HHLEGHFMPVRSLVYSPVDPRVLFSASDDTHVHMYDAEGKSLVTAMSGHASWVLSVDASPDGAAITTGSSDRTVKLWDLN  273 (315)
Q Consensus       194 ~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~d~~i~iwd~~  273 (315)
                      ... ........+++.+.+++++++-...+.|..+|+.+... ..+........++++.. +.++++-...+.|...|..
T Consensus       160 ~l~-~~~~~P~GlalD~~~~~LY~aD~~~~~I~~~d~dG~~~-~v~~~~l~~P~glav~~-~~ly~tD~~~~~I~~~dk~  236 (628)
T 4a0p_A          160 TLV-PNVGRANGLTIDYAKRRLYWTDLDTNLIESSNMLGLNR-EVIADDLPHPFGLTQYQ-DYIYWTDWSRRSIERANKT  236 (628)
T ss_dssp             EEE-CSCSSEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC-EEEEECCSCEEEEEEET-TEEEEEETTTTEEEEEETT
T ss_pred             EEE-CCCCCcceEEEccccCEEEEEECCCCEEEEEcCCCCce-EEeeccCCCceEEEEEC-CEEEEecCCCCEEEEEECC
Confidence            222 23446789999987777777777888999999876543 23333344566788775 4566666668888888866


Q ss_pred             ccc
Q 021247          274 MRA  276 (315)
Q Consensus       274 ~~~  276 (315)
                      +++
T Consensus       237 tg~  239 (628)
T 4a0p_A          237 SGQ  239 (628)
T ss_dssp             TCC
T ss_pred             CCC
Confidence            554

>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A

Probab=98.63  E-value=3.7e-07  Score=83.50  Aligned_cols=229  Identities=9%  Similarity=-0.009  Sum_probs=133.8

Q ss_pred             CCcEEEEcCCCCcceeeccccccceEEEEeCCCCC-EEEEeeCCCeEEEEECCC----CceeEEeeCCcccEEEEEECCC
Q 021247           39 DETVKLWRPDDMQLERTNTGHCLGVVSVAAHPSGI-IAASASLDSFVRVFDVDT----NASIATLEASPSEVWQMQFDPK  113 (315)
Q Consensus        39 d~~v~~w~~~~~~~~~~~~~h~~~v~~~~~~~~g~-~l~s~~~d~~i~~w~~~~----~~~~~~~~~~~~~v~~~~~~~~  113 (315)
                      .+.|+..+.+..+....... ...+..+++++.+. ++++-...+.|+.+++..    ......+.........+++++.
T Consensus       385 ~~~I~~id~~~~~~~~~~~~-~~~p~gla~d~~~~~Ly~sD~~~~~I~~~~~~g~~~~~~~~~~i~~~~~~P~glavD~~  463 (699)
T 1n7d_A          385 RHEVRKMTLDRSEYTSLIPN-LRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWI  463 (699)
T ss_dssp             TTC-CEECTTSCCEECCSCC-CTTCCCCEEETTTTEEEECCTTTTSBEEEESCCCCC-CCCCCBCCSCC--CCCEECCCS
T ss_pred             ccceEEEeCCCCcceeeecc-CcceEEEccccccCeEEEEecCCCeEEEEecCCCCCCcceEEEEeCCCCCcceEEEEee
Confidence            35677777765544333322 22456778887554 455555667899999875    2222222212223456788866


Q ss_pred             CCeEEEEecCCCeEEEEecCCcceeeeecCCCCCCCCCCccCCCCcceEEEEECCCCCEE-EEecC-CCcEEEEEcccce
Q 021247          114 GTTLAVAGGGSASVKLWDTATWNLIATLSIPRPEGLKPTDKSSSKKFVLSVAWSPDGRRI-ACGSM-DGTISVFDVTRAK  191 (315)
Q Consensus       114 ~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l-~~~s~-dg~i~i~d~~~~~  191 (315)
                      +..++++-...+.|.++++........+...             ......++++|.+.+| ++-.. .+.|..+++....
T Consensus       464 ~g~LY~tD~~~~~I~v~d~dg~~~~~l~~~~-------------~~~P~giavDp~~g~ly~td~~~~~~I~~~~~dG~~  530 (699)
T 1n7d_A          464 HSNIYWTDSVLGTVSVADTKGVKRKTLFREQ-------------GSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVD  530 (699)
T ss_dssp             SSBCEECCTTTSCEEEEBSSSCCEEEECCCS-------------SCCCCCEECCSSSSCCEECCCSSSCCEEBCCSSSCC
T ss_pred             CCcEEEEeccCCeEEEEecCCCceEEEEeCC-------------CCCcceEEEccCCCcEEEcccCCCCeEEEEeCCCCC
Confidence            6667776666788999988654322221100             0124578888865544 44333 3678888775332


Q ss_pred             eeeeecCCccceEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCeeEEEee--cccccEEEEEEcCCCCeEEEEeCCCcEEE
Q 021247          192 FLHHLEGHFMPVRSLVYSPVDPRVLFSASDDTHVHMYDAEGKSLVTAMS--GHASWVLSVDASPDGAAITTGSSDRTVKL  269 (315)
Q Consensus       192 ~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~--~~~~~i~~~~~~~~~~~l~s~~~d~~i~i  269 (315)
                      ....+.......+.|+|+|.+++++++-...+.|.++++.+......+.  ........+++..+ .++++....+.|..
T Consensus       531 ~~~l~~~~l~~PnGlavd~~~~~LY~aD~~~~~I~~~d~dG~~~~~~~~~~~~~~~P~glavd~~-~lywtd~~~~~V~~  609 (699)
T 1n7d_A          531 IYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVFED-KVFWTDIINEAIFS  609 (699)
T ss_dssp             CCEESCSSCSSCCCEEECTTTCCEEEEETTTTEEEEECSSSSCCEEECCCSSSCSSCCCCEEETT-EEEEECSTTTCEEE
T ss_pred             eeEEEeCCCCCccEEEEeccCCEEEEEecCCCeEEEEccCCCceEEEEecCCcCCCceEeEEECC-EEEEEeCCCCeEEE
Confidence            2111122233457899998778888888888999999987643333222  12233445666654 56667777889999


Q ss_pred             EecCccceehccc
Q 021247          270 WDLNMRAAMQSMT  282 (315)
Q Consensus       270 wd~~~~~~~~~~~  282 (315)
                      ++..+++.+..+.
T Consensus       610 ~d~~~G~~~~~i~  622 (699)
T 1n7d_A          610 ANRLTGSDVNLLA  622 (699)
T ss_dssp             EETTTEEEEECCC
T ss_pred             EEccCCCceEEee
Confidence            9987776665553

>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}

Probab=98.60  E-value=0.00018  Score=66.43  Aligned_cols=218  Identities=11%  Similarity=0.038  Sum_probs=133.7

Q ss_pred             CCCeEEEEECCCCceeEEeeCCcccEEEEEECCCCCeEEEEecCCCeEEEEecCCcce----eeeecCCCCCCCCCCccC
Q 021247           80 LDSFVRVFDVDTNASIATLEASPSEVWQMQFDPKGTTLAVAGGGSASVKLWDTATWNL----IATLSIPRPEGLKPTDKS  155 (315)
Q Consensus        80 ~d~~i~~w~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~~d~~~~~~----~~~~~~~~~~~~~~~~~~  155 (315)
                      ....|+..++........+. ....+..++|++.+..++++-...+.|+.+++.....    ...+.             
T Consensus       402 n~~~Ir~i~l~~~~~~~l~~-~~~~~~gl~~d~~~~~lY~sD~~~~~I~~~~l~g~~~~~~~~~vi~-------------  467 (791)
T 3m0c_C          402 NRHEVRKMTLDRSEYTSLIP-NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVIS-------------  467 (791)
T ss_dssp             CBSSEEEECTTSCCCEEEEC-SCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEEC-------------
T ss_pred             cccceeEeeccCCcceeeec-CCCceEEEeecccCCeeEEeeccceeEEEEeccCCCCCcceeEEEe-------------
Confidence            34568888887655433333 4456778999997777888877788898888764211    11110             


Q ss_pred             CCCcceEEEEECCCCC-EEEEecCCCcEEEEEcccceeeeeecCCccceEEEEEcCCCCcEEEEEeCC-CeEEEEeCCCC
Q 021247          156 SSKKFVLSVAWSPDGR-RIACGSMDGTISVFDVTRAKFLHHLEGHFMPVRSLVYSPVDPRVLFSASDD-THVHMYDAEGK  233 (315)
Q Consensus       156 ~~~~~i~~~~~~~~~~-~l~~~s~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d-~~i~~wd~~~~  233 (315)
                      ........|++.+.++ ++++-...+.|.+.++........+.......+.|++.|..+.++++-... +.|.+.++.+.
T Consensus       468 ~~l~~P~GLAvD~~~~~LY~tD~~~~~I~v~~ldG~~~~~l~~~~l~~P~gIaVDp~~g~LYwtD~g~~~~I~~~~~dG~  547 (791)
T 3m0c_C          468 RDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGV  547 (791)
T ss_dssp             SSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSC
T ss_pred             cCCCCcceeeeeecCCcEEEEecCCCeEEEEeCCCCeEEEEEeCCCCCcceEEEecCCCCEEEecCCCCCeEEEEecCCC
Confidence            0112245889988765 455667788999999875443333333445678999998777777766444 78999998876


Q ss_pred             eeEEEeecccccEEEEEEcCCCCeE-EEEeCCCcEEEEecCccceehcccc--cccceEEEEEeeCCCEEE-EEeCCCcE
Q 021247          234 SLVTAMSGHASWVLSVDASPDGAAI-TTGSSDRTVKLWDLNMRAAMQSMTN--HTDQVWGVSFRPLGGRVV-SVSDDKSI  309 (315)
Q Consensus       234 ~~~~~~~~~~~~i~~~~~~~~~~~l-~s~~~d~~i~iwd~~~~~~~~~~~~--~~~~v~~~~~s~~~~~l~-s~~~d~~i  309 (315)
                      ...........+...|++++.+..| ++-...++|...+++.......+..  .-....+|++.  +.+|+ +-...+.|
T Consensus       548 ~~~~lv~~~l~~P~GLavD~~~~~LYwaD~~~~~I~~~d~dG~~~~~v~~~~~~l~~P~glav~--~~~lYwtD~~~~~I  625 (791)
T 3m0c_C          548 DIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVF--EDKVFWTDIINEAI  625 (791)
T ss_dssp             CEEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEECTTTTSSEEEEEEE--TTEEEEEETTTTEE
T ss_pred             ceEEEEeCCCCCceEEEEecCCCeEEEEeCCCCcEEEEecCCCceEEEecCCCccCCCCEEEEe--CCEEEEEECCCCEE
Confidence            5544444445678999999765555 4445567899998864332222222  12234566653  33454 33344555


Q ss_pred             EEee
Q 021247          310 SLYE  313 (315)
Q Consensus       310 ~i~~  313 (315)
                      ...+
T Consensus       626 ~~~d  629 (791)
T 3m0c_C          626 FSAN  629 (791)
T ss_dssp             EEEE
T ss_pred             EEEe
Confidence            5543

>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3

Probab=98.60  E-value=0.00015  Score=59.35  Aligned_cols=235  Identities=12%  Similarity=-0.020  Sum_probs=132.8

Q ss_pred             cceEEEEEeecCCCCCcEEEEeeCCCcEEEEcCCCCcceeeccccccceEEEEeCCCCCEEEEeeCC-C-eEEEEECCCC
Q 021247           15 ESVWAVTWVPATETRPALLLTGSLDETVKLWRPDDMQLERTNTGHCLGVVSVAAHPSGIIAASASLD-S-FVRVFDVDTN   92 (315)
Q Consensus        15 ~~v~~v~~~~~~~~~~~~l~sgs~d~~v~~w~~~~~~~~~~~~~h~~~v~~~~~~~~g~~l~s~~~d-~-~i~~w~~~~~   92 (315)
                      ....+++|.|.+.    ++++-..++.|..|+.+.. ...... -...+..+.+.++|+++++.... + .|..++..++
T Consensus        32 ~~pegia~~~~g~----lyv~d~~~~~I~~~d~~g~-~~~~~~-~~~~p~gia~~~dG~l~vad~~~~~~~v~~~d~~~g  105 (306)
T 2p4o_A           32 TFLENLASAPDGT----IFVTNHEVGEIVSITPDGN-QQIHAT-VEGKVSGLAFTSNGDLVATGWNADSIPVVSLVKSDG  105 (306)
T ss_dssp             CCEEEEEECTTSC----EEEEETTTTEEEEECTTCC-EEEEEE-CSSEEEEEEECTTSCEEEEEECTTSCEEEEEECTTS
T ss_pred             CCcceEEECCCCC----EEEEeCCCCeEEEECCCCc-eEEEEe-CCCCceeEEEcCCCcEEEEeccCCcceEEEEcCCCC
Confidence            3566788877543    5555557889999988653 222221 12357889999999977765433 2 4666776666


Q ss_pred             ceeEEeeCC-cccEEEEEECCCCCeEEEEecCCCeEEEEecCCcce-eeeecCCCCCCCCCCccCCCCcceEEEEECCCC
Q 021247           93 ASIATLEAS-PSEVWQMQFDPKGTTLAVAGGGSASVKLWDTATWNL-IATLSIPRPEGLKPTDKSSSKKFVLSVAWSPDG  170 (315)
Q Consensus        93 ~~~~~~~~~-~~~v~~~~~~~~~~~~~~~~~~d~~i~~~d~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~  170 (315)
                      +........ ......++..+. ..++++...++.|.++|...++. +.... +.   .........-.....+  ++++
T Consensus       106 ~~~~~~~~~~~~~~~g~~~~~~-~~~~v~d~~~g~i~~~d~~~~~~~v~~~~-~~---~~~~~~~~~~~~pngi--s~dg  178 (306)
T 2p4o_A          106 TVETLLTLPDAIFLNGITPLSD-TQYLTADSYRGAIWLIDVVQPSGSIWLEH-PM---LARSNSESVFPAANGL--KRFG  178 (306)
T ss_dssp             CEEEEEECTTCSCEEEEEESSS-SEEEEEETTTTEEEEEETTTTEEEEEEEC-GG---GSCSSTTCCSCSEEEE--EEET
T ss_pred             eEEEEEeCCCccccCcccccCC-CcEEEEECCCCeEEEEeCCCCcEeEEEEC-Cc---cccccccCCCCcCCCc--CcCC
Confidence            543322221 122344444443 44555555678899998765321 11110 00   0000000011124455  7777


Q ss_pred             CEE-EEecCCCcEEEEEccc-cee--eeeecCCccceEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCeeEE--Eeecccc
Q 021247          171 RRI-ACGSMDGTISVFDVTR-AKF--LHHLEGHFMPVRSLVYSPVDPRVLFSASDDTHVHMYDAEGKSLVT--AMSGHAS  244 (315)
Q Consensus       171 ~~l-~~~s~dg~i~i~d~~~-~~~--~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~--~~~~~~~  244 (315)
                      +.| ++-+..+.|..+|+.. ++.  ...+. .......+++.+ +++++++....+.|.++|..+ +...  .+.....
T Consensus       179 ~~lyv~d~~~~~I~~~~~~~~g~~~~~~~~~-~~~~P~gi~vd~-dG~l~va~~~~~~V~~~~~~G-~~~~~~~~~~~~~  255 (306)
T 2p4o_A          179 NFLYVSNTEKMLLLRIPVDSTDKPGEPEIFV-EQTNIDDFAFDV-EGNLYGATHIYNSVVRIAPDR-STTIIAQAEQGVI  255 (306)
T ss_dssp             TEEEEEETTTTEEEEEEBCTTSCBCCCEEEE-ESCCCSSEEEBT-TCCEEEECBTTCCEEEECTTC-CEEEEECGGGTCT
T ss_pred             CEEEEEeCCCCEEEEEEeCCCCCCCccEEEe-ccCCCCCeEECC-CCCEEEEeCCCCeEEEECCCC-CEEEEeecccccC
Confidence            655 5556778999999864 321  11111 112345677887 567777777788999999864 3322  2222335


Q ss_pred             cEEEEEEc---CCCCeEEEEeCCC
Q 021247          245 WVLSVDAS---PDGAAITTGSSDR  265 (315)
Q Consensus       245 ~i~~~~~~---~~~~~l~s~~~d~  265 (315)
                      .+.+++|.   |++..|+.+...+
T Consensus       256 ~p~~~a~~g~~~d~~~LyVt~~~~  279 (306)
T 2p4o_A          256 GSTAVAFGQTEGDCTAIYVVTNGG  279 (306)
T ss_dssp             TEEEEEECCSTTTTTEEEEEECTT
T ss_pred             CceEEEEecccCCCCEEEEECCCC
Confidence            68899998   7877666555443

>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}

Probab=98.56  E-value=1.8e-05  Score=73.20  Aligned_cols=195  Identities=10%  Similarity=0.070  Sum_probs=109.7

Q ss_pred             cEEEEEEC-CCCCeEEEEecCC----CeEEEEecCCc-ceeeeecCCCCCCCCCCccCCCCcceEEEEECCCCCEEEEec
Q 021247          104 EVWQMQFD-PKGTTLAVAGGGS----ASVKLWDTATW-NLIATLSIPRPEGLKPTDKSSSKKFVLSVAWSPDGRRIACGS  177 (315)
Q Consensus       104 ~v~~~~~~-~~~~~~~~~~~~d----~~i~~~d~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~s  177 (315)
                      .+...+|+ |+|+.++++...+    .+|+++|+.++ +.+..     .          -......++|+|||+.|+...
T Consensus       175 ~~~~~~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~g~~~l~~-----~----------~~~~~~~~~WspDg~~l~y~~  239 (751)
T 2xe4_A          175 DVMEVKPAPPEHDLVAFSVDMSGNEVYTIEFKRISDPSQTIAD-----K----------VSGTNGEIVWGPDHTSLFYVT  239 (751)
T ss_dssp             EEEEEEECTTTTCEEEEEEESSSSSCEEEEEEETTCTTCCCCC-----C----------EEEECSCCEECSSTTEEEEEE
T ss_pred             EEeeeEecCCCCCEEEEEEeCCCCceEEEEEEECCCCCEeCCc-----c----------ccCceeeEEEecCCCEEEEEE
Confidence            56788999 9999887765443    35999999876 42210     0          001134688999998887766


Q ss_pred             CC-----CcEEEEEcccceee--eeec-CCccceEEEEEcCCCCcEEEEEeC--CCeEEEEeCCCC--ee--EEEeeccc
Q 021247          178 MD-----GTISVFDVTRAKFL--HHLE-GHFMPVRSLVYSPVDPRVLFSASD--DTHVHMYDAEGK--SL--VTAMSGHA  243 (315)
Q Consensus       178 ~d-----g~i~i~d~~~~~~~--~~~~-~~~~~v~~~~~~~~~~~~l~s~~~--d~~i~~wd~~~~--~~--~~~~~~~~  243 (315)
                      .+     ..|+.+++.++...  ..+. ........+.|+|++..++++...  ...|+++|+.++  ..  ........
T Consensus       240 ~d~~~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~~~~  319 (751)
T 2xe4_A          240 KDETLRENKVWRHVMGKLQSEDVCLYEEHNPLFSAFMYKAADTNTLCIGSQSPETAEVHLLDLRKGNAHNTLEIVRPREK  319 (751)
T ss_dssp             ECTTCCEEEEEEEETTSCGGGCEEEEECCCTTCEEEEEECTTSSEEEEEEECSSCEEEEEEESSSCTTCCCEEESSCCCT
T ss_pred             ECCCCCCCEEEEEECCCCchhcEEEEecCCCceEEEEEECCCCCEEEEEecCCCCceEEEEECCCCCCCceeEEeecCCC
Confidence            54     35888888765321  1111 222345678899955444444433  346888898764  22  22223334


Q ss_pred             ccEEEEEEcCCCCeEEEEeCC----CcEEEEecCccceehc-ccccccceEEEEEeeCCCEE-EEEeCCCcEEEee
Q 021247          244 SWVLSVDASPDGAAITTGSSD----RTVKLWDLNMRAAMQS-MTNHTDQVWGVSFRPLGGRV-VSVSDDKSISLYE  313 (315)
Q Consensus       244 ~~i~~~~~~~~~~~l~s~~~d----~~i~iwd~~~~~~~~~-~~~~~~~v~~~~~s~~~~~l-~s~~~d~~i~i~~  313 (315)
                      ....++.|+.++.+++....+    ..|..+++.....+.. +..+...+.--.+++.+..| ++...++..+||-
T Consensus       320 ~~~~s~~~~~g~~l~~~t~~~~a~~~~L~~~d~~~~~~~~~~li~~~~~~~l~~~~~~~~~lv~~~~~~g~~~l~~  395 (751)
T 2xe4_A          320 GVRYDVQMHGTSHLVILTNEGGAVNHKLLIAPRGQPSDWSHVLVDHSEDVFMESIAVRSNYLVVAGRRAGLTRIWT  395 (751)
T ss_dssp             TCCEEEEEETTTEEEEEECTTTCTTCEEEEEETTSTTCCCCEEECCCSSEEEEEEEECSSEEEEEEEETTEEEEEE
T ss_pred             CceEEEeeeeCCEEEEEeCCCCCCCcEEEEEcCCCcccceeeEECCCCCcEEEEEEEECCEEEEEEEeCCEEEEEE
Confidence            445556655444455555443    2566667654222333 33343332222344445554 5777778666653

>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*

Probab=98.55  E-value=0.00012  Score=65.96  Aligned_cols=227  Identities=9%  Similarity=0.017  Sum_probs=133.3

Q ss_pred             CCCcEEEEcCCCCcc-eeeccccccceEEEEeCCCC-CEEEEeeCCCeEEEEECCCCce-eEEeeCCcccEEEEEECCCC
Q 021247           38 LDETVKLWRPDDMQL-ERTNTGHCLGVVSVAAHPSG-IIAASASLDSFVRVFDVDTNAS-IATLEASPSEVWQMQFDPKG  114 (315)
Q Consensus        38 ~d~~v~~w~~~~~~~-~~~~~~h~~~v~~~~~~~~g-~~l~s~~~d~~i~~w~~~~~~~-~~~~~~~~~~v~~~~~~~~~  114 (315)
                      ....|+..+.+.... .......-..+..+++++.+ .++++-...+.|+.++++.... ...+.........+++++.+
T Consensus        16 ~~~~I~~i~~~~~~~~~~~~~~~~~~~~~ld~~~~~~~ly~sD~~~~~I~r~~~~g~~~~~~v~~~~~~~P~GlAvD~~~   95 (619)
T 3s94_A           16 NRRDLRLVDATNGKENATIVVGGLEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSPDGLACDWLG   95 (619)
T ss_dssp             CSSBEEEECCC---------CBCCSCEEEEEEETTTTEEEEEETTTTEEEEEEC-----CEEEECSSCSCEEEEEEETTT
T ss_pred             ccccEEEEeCCCCcceEEEEEcCCCceEEEEEEeCCCEEEEEECCCCeEEEEEccCCCceEEEEeCCCCCcCeEEEEecC
Confidence            356788888765421 11122223457788998855 4555655678899999876532 22333333567899999988


Q ss_pred             CeEEEEecCCCeEEEEecCCcceeeeecCCCCCCCCCCccCCCCcceEEEEECCCCCEE-EEe-cCCCcEEEEEccccee
Q 021247          115 TTLAVAGGGSASVKLWDTATWNLIATLSIPRPEGLKPTDKSSSKKFVLSVAWSPDGRRI-ACG-SMDGTISVFDVTRAKF  192 (315)
Q Consensus       115 ~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l-~~~-s~dg~i~i~d~~~~~~  192 (315)
                      ..++++-...+.|.+.++...... .+...            .-.....+++.|.+..| ++- +..+.|...++.....
T Consensus        96 ~~ly~~d~~~~~I~v~~~dG~~~~-~l~~~------------~l~~P~~Iavdp~~g~ly~tD~g~~~~I~r~~~dG~~~  162 (619)
T 3s94_A           96 EKLYWTDSETNRIEVSNLDGSLRK-VLFWQ------------ELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSR  162 (619)
T ss_dssp             TEEEEEETTTTEEEEEETTSCSCE-EEECS------------SCSCCCCEEEETTTTEEEEEECSSSCEEEEEETTSCSC
T ss_pred             CEEEEEeCCCCEEEEEECCCCCEE-EEEeC------------CCCCCceEEEecCCCeEEEeccCCCCEEEEEECCCCce
Confidence            888888888899999998753322 22100            01124578998865544 443 2346777777653322


Q ss_pred             eeeecCCccceEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCeeEEEeecccccEEEEEEcCCCCeEEEEeCCCcEEEEec
Q 021247          193 LHHLEGHFMPVRSLVYSPVDPRVLFSASDDTHVHMYDAEGKSLVTAMSGHASWVLSVDASPDGAAITTGSSDRTVKLWDL  272 (315)
Q Consensus       193 ~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~d~~i~iwd~  272 (315)
                      .............+++.+.+++++++-...+.|..+|..+........+......++++.++ .+.++-..++.|...|.
T Consensus       163 ~~l~~~~~~~P~Glald~~~~~LY~aD~~~~~I~~~~~dG~~~~~~~~~~~~~P~gi~~~~~-~ly~td~~~~~V~~~d~  241 (619)
T 3s94_A          163 FIIINSEIYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDGTNRQAVVKGSLPHPFALTLFED-ILYWTDWSTHSILACNK  241 (619)
T ss_dssp             EEEECSSCSSEEEEEEETTTTEEEEEETTTCCEEEESSSCCEEC---------CCCEEESSS-EEEEECTTTCSEEEEES
T ss_pred             EEEEeCCCCCCcEEEEEccCCEEEEEeCCCCeEEEecCCCCccEEEEeCCCCCceEEEEeCC-EEEEecCCCCEEEEEEC
Confidence            22222233456889999877777777777889999998765433322222223346777655 55566667788988888


Q ss_pred             Ccccee
Q 021247          273 NMRAAM  278 (315)
Q Consensus       273 ~~~~~~  278 (315)
                      .+++..
T Consensus       242 ~tg~~~  247 (619)
T 3s94_A          242 YTGEGL  247 (619)
T ss_dssp             SSCCCC
T ss_pred             CCCccc
Confidence            766543

>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*

Probab=98.55  E-value=0.0004  Score=62.68  Aligned_cols=218  Identities=9%  Similarity=0.027  Sum_probs=137.5

Q ss_pred             CCCeEEEEECCCCceeEEeeC-CcccEEEEEECCCCCeEEEEecCCCeEEEEecCCcceeeeecCCCCCCCCCCccCCCC
Q 021247           80 LDSFVRVFDVDTNASIATLEA-SPSEVWQMQFDPKGTTLAVAGGGSASVKLWDTATWNLIATLSIPRPEGLKPTDKSSSK  158 (315)
Q Consensus        80 ~d~~i~~w~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~  158 (315)
                      ....|+..++++......+.. .......++|++.+..++++-..++.|..+++........+...             .
T Consensus        13 ~~~~I~~i~l~~~~~~~~~~~~~~~~~~~l~~d~~~~~lywtD~~~~~I~r~~~~g~~~~~v~~~g-------------~   79 (628)
T 4a0p_A           13 RRADIRRISLETNNNNVAIPLTGVKEASALDFDVTDNRIYWTDISLKTISRAFMNGSALEHVVEFG-------------L   79 (628)
T ss_dssp             ETTEEEEEESSCTTCEEECCCCSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSS-------------C
T ss_pred             eCCcEEEEECCCCCcceEEEcCCCCceEEEEEECCCCEEEEEECCCCeEEEEECCCCCcEEEEeCC-------------C
Confidence            456799999987654333322 23467799999988888888778899999988654332222110             1


Q ss_pred             cceEEEEECCCCC-EEEEecCCCcEEEEEcccceeeeeecCCccceEEEEEcCCCCcEEEEE-eCCCeEEEEeCCCCeeE
Q 021247          159 KFVLSVAWSPDGR-RIACGSMDGTISVFDVTRAKFLHHLEGHFMPVRSLVYSPVDPRVLFSA-SDDTHVHMYDAEGKSLV  236 (315)
Q Consensus       159 ~~i~~~~~~~~~~-~l~~~s~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~-~~d~~i~~wd~~~~~~~  236 (315)
                      .....+++.+.++ ..++-...+.|.+.++................+.+++.|..+.++++- +..+.|...++.+....
T Consensus        80 ~~P~GlAvD~~~~~LY~tD~~~~~I~v~~~dG~~~~~l~~~~l~~P~~iavdp~~G~lY~tD~g~~~~I~r~~~dG~~~~  159 (628)
T 4a0p_A           80 DYPEGMAVDWLGKNLYWADTGTNRIEVSKLDGQHRQVLVWKDLDSPRALALDPAEGFMYWTEWGGKPKIDRAAMDGSERT  159 (628)
T ss_dssp             SCCCEEEEETTTTEEEEEETTTTEEEEEETTSTTCEEEECSSCCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCE
T ss_pred             CCcceEEEEeCCCEEEEEECCCCEEEEEecCCCcEEEEEeCCCCCcccEEEccCCCeEEEeCCCCCCEEEEEeCCCCceE
Confidence            1245788887655 446666778999999864432222223344578999998777666665 33678888888765433


Q ss_pred             EEeecccccEEEEEEcCCCCeE-EEEeCCCcEEEEecCccceehcccccccceEEEEEeeCCCEEEEEeCCCcEEEee
Q 021247          237 TAMSGHASWVLSVDASPDGAAI-TTGSSDRTVKLWDLNMRAAMQSMTNHTDQVWGVSFRPLGGRVVSVSDDKSISLYE  313 (315)
Q Consensus       237 ~~~~~~~~~i~~~~~~~~~~~l-~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~i~i~~  313 (315)
                      ... ....+...+++++++..| ++-...+.|...+++.... +.+........++++.. +...++-...+.|...|
T Consensus       160 ~l~-~~~~~P~GlalD~~~~~LY~aD~~~~~I~~~d~dG~~~-~v~~~~l~~P~glav~~-~~ly~tD~~~~~I~~~d  234 (628)
T 4a0p_A          160 TLV-PNVGRANGLTIDYAKRRLYWTDLDTNLIESSNMLGLNR-EVIADDLPHPFGLTQYQ-DYIYWTDWSRRSIERAN  234 (628)
T ss_dssp             EEE-CSCSSEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC-EEEEECCSCEEEEEEET-TEEEEEETTTTEEEEEE
T ss_pred             EEE-CCCCCcceEEEccccCEEEEEECCCCEEEEEcCCCCce-EEeeccCCCceEEEEEC-CEEEEecCCCCEEEEEE
Confidence            322 345678899999975555 5555667899999875332 23333334556777754 33334444456666654

>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}

Probab=98.52  E-value=0.00035  Score=60.60  Aligned_cols=236  Identities=11%  Similarity=0.038  Sum_probs=140.7

Q ss_pred             eEEEEeCCC--CCEEEEeeCCCeEEEEECCCCceeEEeeCC---cccEEEEEE-------CCCCCeEEEEecCCC-----
Q 021247           63 VVSVAAHPS--GIIAASASLDSFVRVFDVDTNASIATLEAS---PSEVWQMQF-------DPKGTTLAVAGGGSA-----  125 (315)
Q Consensus        63 v~~~~~~~~--g~~l~s~~~d~~i~~w~~~~~~~~~~~~~~---~~~v~~~~~-------~~~~~~~~~~~~~d~-----  125 (315)
                      ...|+++|.  ++++++-...+.|++.|+.++.........   ......++|       ++++..++++...++     
T Consensus       141 p~~la~dp~~~~~Lyv~~~~~~~i~~ID~~~~~v~~l~~~~~~~~~~p~~ia~~~~~~~~d~~G~~lyvad~~~~~~~~~  220 (496)
T 3kya_A          141 NGRLAFDPLNKDHLYICYDGHKAIQLIDLKNRMLSSPLNINTIPTNRIRSIAFNKKIEGYADEAEYMIVAIDYDGKGDES  220 (496)
T ss_dssp             EEEEEEETTEEEEEEEEEETEEEEEEEETTTTEEEEEECCTTSSCSBEEEEEECCCBTTTBCTTCEEEEEECCCTTGGGE
T ss_pred             CCEEEEccCCCCEEEEEECCCCeEEEEECCCCEEEEEEccCccccCCCcEEEEeecccccCCCCCEEEEEeCCCCCcccC
Confidence            567889983  556666665577999998887665444332   235789999       999987776654442     


Q ss_pred             -eEEEEecCC-ccee-----eeecCCCCCCCCCCccCCCCcceEEEEECCC-CCEEEEecCCCcEEEEEcc-------cc
Q 021247          126 -SVKLWDTAT-WNLI-----ATLSIPRPEGLKPTDKSSSKKFVLSVAWSPD-GRRIACGSMDGTISVFDVT-------RA  190 (315)
Q Consensus       126 -~i~~~d~~~-~~~~-----~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-~~~l~~~s~dg~i~i~d~~-------~~  190 (315)
                       .|.+++... ++..     ..+.              .-.....++++|+ +.++++-..++.|..+|+.       ++
T Consensus       221 ~~V~~i~r~~~G~~~~~~~~~~v~--------------~~~~p~giavdp~~g~LYvtd~~~g~V~r~d~~~~~~~~~tg  286 (496)
T 3kya_A          221 PSVYIIKRNADGTFDDRSDIQLIA--------------AYKQCNGATIHPINGELYFNSYEKGQVFRLDLVDYFKTIKNG  286 (496)
T ss_dssp             EEEEEEECCTTSCCSTTSCEEEEE--------------EESCCCCEEECTTTCCEEEEETTTTEEEEECHHHHHHHHHTT
T ss_pred             ceEEEEecCCCCceeecccceeec--------------cCCCceEEEEcCCCCeEEEEECCCCEEEEEecccccccccCc
Confidence             245554222 1111     0000              0012357888994 5556677788899999987       44


Q ss_pred             ee-----------eeee-c-CCccceEEEEEcCCCCcEEEEEeCCCeEEEEeC--CCCee--EEEeecc-----------
Q 021247          191 KF-----------LHHL-E-GHFMPVRSLVYSPVDPRVLFSASDDTHVHMYDA--EGKSL--VTAMSGH-----------  242 (315)
Q Consensus       191 ~~-----------~~~~-~-~~~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~--~~~~~--~~~~~~~-----------  242 (315)
                      ..           ...+ . ......+.++|+|.+..++++-...+.|+.++.  ..+.+  ...+.+.           
T Consensus       287 ~~~tp~~~~~~g~~~~l~~~~~~~~p~~ia~~p~G~~lYvaD~~~h~I~kid~dg~~~~~~~~~~~aG~~g~~G~~DG~~  366 (496)
T 3kya_A          287 GSWDPIVKNNPNTFKQLFTIADPSWEFQIFIHPTGKYAYFGVINNHYFMRSDYDEIKKEFITPYNFVGGYKQSGYRDDVG  366 (496)
T ss_dssp             CCCCCBGGGCTTTEEEEEECSSSSCCEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEECCCEEEEEBTTBCCCBCCBG
T ss_pred             eeecccccccccccceeEecCCCCCceEEEEcCCCCEEEEEeCCCCEEEEEecCCCcceecccEEecCCCCCCcccCCcc
Confidence            43           1111 1 122345789999955446677777889998654  33322  0111111           


Q ss_pred             ----cccEE-EEEEc-------CCCCeEEEEeCCCcEEEEecCccceehccccc------------------------cc
Q 021247          243 ----ASWVL-SVDAS-------PDGAAITTGSSDRTVKLWDLNMRAAMQSMTNH------------------------TD  286 (315)
Q Consensus       243 ----~~~i~-~~~~~-------~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~------------------------~~  286 (315)
                          -.... .+...       +++.+.++-..+++|+.++. .+. +.++.+.                        -.
T Consensus       367 ~~a~f~~P~~gv~vd~~~~~~~~~g~lyVaD~~N~rIr~i~~-~G~-v~TiaG~g~~~~~~~~~~~G~~dG~~~~~a~f~  444 (496)
T 3kya_A          367 TEARMNNPCQGVFVKNPDYTGEEEYDFYFVDRLNFCVRKVTP-EGI-VSTYAGRGASTSLADGNQWGTDDGDLREVARFR  444 (496)
T ss_dssp             GGCBCSSEEEEEEEECTTCCSSCCEEEEEEEGGGTEEEEECT-TCB-EEEEEESCTTHHHHHSCSCCCCCEETTTTCCCS
T ss_pred             cccccCCCeEEEEEccccccccCCCeEEEEECCCCEEEEEeC-CCC-EEEEecccccccccCccccccCCCCchhhhhcC
Confidence                11244 45554       45677777777888999984 332 2222211                        12


Q ss_pred             ceEEEEEeeC-CCEEEEEeCCCcEEEeec
Q 021247          287 QVWGVSFRPL-GGRVVSVSDDKSISLYEY  314 (315)
Q Consensus       287 ~v~~~~~s~~-~~~l~s~~~d~~i~i~~~  314 (315)
                      ...+|++.++ |...++=....+||.+++
T Consensus       445 ~P~gIavd~~~g~lyVaD~~N~rIrki~~  473 (496)
T 3kya_A          445 DVSGLVYDDVKEMFYVHDQVGHTIRTISM  473 (496)
T ss_dssp             SEEEEEEETTTTEEEEEETTTTEEEEEEE
T ss_pred             CCcEEEEECCCCEEEEEeCCCCEEEEEEC
Confidence            4779999997 666666666788888875

>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A

Probab=98.50  E-value=0.00013  Score=60.04  Aligned_cols=202  Identities=15%  Similarity=0.242  Sum_probs=122.4

Q ss_pred             EEeecCCCCCcEEEEeeCCCcEEEEcCCCCcceeeccccccceEEEEeCC----CCC---EE-EEeeC--CCeEEEEECC
Q 021247           21 TWVPATETRPALLLTGSLDETVKLWRPDDMQLERTNTGHCLGVVSVAAHP----SGI---IA-ASASL--DSFVRVFDVD   90 (315)
Q Consensus        21 ~~~~~~~~~~~~l~sgs~d~~v~~w~~~~~~~~~~~~~h~~~v~~~~~~~----~g~---~l-~s~~~--d~~i~~w~~~   90 (315)
                      -|.........+++.....+-+.+||+ +++.+..+..  ..++.+..-|    .|.   ++ ++.-.  +.+|+++++.
T Consensus        31 vw~~~~dp~~s~ii~t~k~~gL~Vydl-~G~~l~~~~~--g~~nnVD~r~~~~l~g~~~dla~as~R~~~~n~l~vf~iD  107 (355)
T 3amr_A           31 IWLDPKTPQNSKLITTNKKSGLVVYSL-DGKMLHSYNT--GKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAID  107 (355)
T ss_dssp             EECCSSCGGGCEEEEEETTTEEEEEET-TSCEEEEECC--SCEEEEEEEEEEEETTEEEEEEEEEECSTTCCEEEEEEEC
T ss_pred             EecCCCCCCccEEEEEcCCCCEEEEcC-CCcEEEEccC--CCcccEEEecccccCCceEeEEEEeCCCCCCCeEEEEEEC
Confidence            366333334566777788899999999 5555555543  2344444433    222   22 33333  5789999774


Q ss_pred             C-CceeEEeeC-------CcccEEEEEE--CCC-CCeEEEEecCCCeEEEEecC-------CcceeeeecCCCCCCCCCC
Q 021247           91 T-NASIATLEA-------SPSEVWQMQF--DPK-GTTLAVAGGGSASVKLWDTA-------TWNLIATLSIPRPEGLKPT  152 (315)
Q Consensus        91 ~-~~~~~~~~~-------~~~~v~~~~~--~~~-~~~~~~~~~~d~~i~~~d~~-------~~~~~~~~~~~~~~~~~~~  152 (315)
                      . ...+..+..       ....+..+++  +|. +...++....++.+..|++.       +.+.+.++.+..       
T Consensus       108 p~~~~l~~i~~~~~pv~t~~~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~g~~~~~lVR~f~lgs-------  180 (355)
T 3amr_A          108 GKNGTLQSMTDPDHPIATAINEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKNGYISGKKVRAFKMNS-------  180 (355)
T ss_dssp             TTTCCEEECSCTTSCEECCCSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSCEEEEEEEEEECSS-------
T ss_pred             CCCCceeeccccccCcCCCCCCeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCCCcccceEEEEecCCC-------
Confidence            2 223444421       1145566666  775 44456667788999999883       345566665432       


Q ss_pred             ccCCCCcceEEEEECCCCCEEEEecCCCcEEEEEcc-----cceeeeeec-CC-ccceEEEEEc--CCCCcEE-EEEeCC
Q 021247          153 DKSSSKKFVLSVAWSPDGRRIACGSMDGTISVFDVT-----RAKFLHHLE-GH-FMPVRSLVYS--PVDPRVL-FSASDD  222 (315)
Q Consensus       153 ~~~~~~~~i~~~~~~~~~~~l~~~s~dg~i~i~d~~-----~~~~~~~~~-~~-~~~v~~~~~~--~~~~~~l-~s~~~d  222 (315)
                             .+..|...+....|+.+-++..|..+|.+     +++.+..+. ++ ...+..+++-  +.+..+| +++-.+
T Consensus       181 -------q~EgcvvDd~~g~Lyv~eEd~GIw~~da~p~~~~~~~~v~~~~~g~l~aDvEGLai~~~~~g~gyLivSsQG~  253 (355)
T 3amr_A          181 -------QTEGMAADDEYGRLYIAEEDEAIWKFSAEPDGGSNGTVIDRADGRHLTRDIEGLTIYYAADGKGYLMASSQGN  253 (355)
T ss_dssp             -------CEEEEEEETTTTEEEEEETTTEEEEEECSTTSCSCCEEEEEBSSSSBCSCEEEEEEEECGGGCEEEEEEEGGG
T ss_pred             -------CcceEEEcCCCCeEEEecccceEEEEeCCcCCCCCceEEEEecCCccccCcceEEEEecCCCCEEEEEEcCCC
Confidence                   26788999988899999888778777855     344454432 22 2356777773  3233344 455467


Q ss_pred             CeEEEEeCC-CCeeEEEe
Q 021247          223 THVHMYDAE-GKSLVTAM  239 (315)
Q Consensus       223 ~~i~~wd~~-~~~~~~~~  239 (315)
                      ....+||.+ ..+.+..+
T Consensus       254 ~s~~Vydr~~~~~~vg~f  271 (355)
T 3amr_A          254 SSYAIYDRQGKNKYVADF  271 (355)
T ss_dssp             TEEEEEESSTTCCEEEEE
T ss_pred             CEEEEEECCCCCcEEEEE
Confidence            899999997 45555544

>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}

Probab=98.49  E-value=9.5e-05  Score=68.38  Aligned_cols=200  Identities=15%  Similarity=0.073  Sum_probs=111.2

Q ss_pred             hcccc-ceEEEEEe-ecCCCCCcEEEEeeCCC----cEEEEcCCCC-cceeeccccccceEEEEeCCCCCEEEEeeCC--
Q 021247           11 NAHEE-SVWAVTWV-PATETRPALLLTGSLDE----TVKLWRPDDM-QLERTNTGHCLGVVSVAAHPSGIIAASASLD--   81 (315)
Q Consensus        11 ~~h~~-~v~~v~~~-~~~~~~~~~l~sgs~d~----~v~~w~~~~~-~~~~~~~~h~~~v~~~~~~~~g~~l~s~~~d--   81 (315)
                      .+|+- .+...+|+ |+++.   +.++-+.+|    .|++++.+++ +.....  -......+.|+|+|+.|+-...|  
T Consensus       169 ~~~~~~~~~~~~~S~PDG~~---lAy~~~~~G~~~~~l~v~dl~~g~~~l~~~--~~~~~~~~~WspDg~~l~y~~~d~~  243 (751)
T 2xe4_A          169 EGKAFCDVMEVKPAPPEHDL---VAFSVDMSGNEVYTIEFKRISDPSQTIADK--VSGTNGEIVWGPDHTSLFYVTKDET  243 (751)
T ss_dssp             TTCSCCEEEEEEECTTTTCE---EEEEEESSSSSCEEEEEEETTCTTCCCCCC--EEEECSCCEECSSTTEEEEEEECTT
T ss_pred             cCCCeEEEeeeEecCCCCCE---EEEEEeCCCCceEEEEEEECCCCCEeCCcc--ccCceeeEEEecCCCEEEEEEECCC
Confidence            44543 68889999 88752   334444333    4999998877 532110  01123467899999877766554  


Q ss_pred             ---CeEEEEECCCCce--eEEeeC-CcccEEEEEECCCCCeEEEEecC--CCeEEEEecCCcce-e--eeecCCCCCCCC
Q 021247           82 ---SFVRVFDVDTNAS--IATLEA-SPSEVWQMQFDPKGTTLAVAGGG--SASVKLWDTATWNL-I--ATLSIPRPEGLK  150 (315)
Q Consensus        82 ---~~i~~w~~~~~~~--~~~~~~-~~~~v~~~~~~~~~~~~~~~~~~--d~~i~~~d~~~~~~-~--~~~~~~~~~~~~  150 (315)
                         ..|+++++.+++.  ...+.. .......+.|+|++++++++...  ...|.++|+.+.+. .  ..+. +.     
T Consensus       244 ~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~-~~-----  317 (751)
T 2xe4_A          244 LRENKVWRHVMGKLQSEDVCLYEEHNPLFSAFMYKAADTNTLCIGSQSPETAEVHLLDLRKGNAHNTLEIVR-PR-----  317 (751)
T ss_dssp             CCEEEEEEEETTSCGGGCEEEEECCCTTCEEEEEECTTSSEEEEEEECSSCEEEEEEESSSCTTCCCEEESS-CC-----
T ss_pred             CCCCEEEEEECCCCchhcEEEEecCCCceEEEEEECCCCCEEEEEecCCCCceEEEEECCCCCCCceeEEee-cC-----
Confidence               3688888877642  233322 22345678899999988776543  34678888875421 1  1111 11     


Q ss_pred             CCccCCCCcceEEEEECCCCCEE-EEecCC----CcEEEEEcccceeeee-ecCCcc--ceEEEEEcCCCCcEEEEEeCC
Q 021247          151 PTDKSSSKKFVLSVAWSPDGRRI-ACGSMD----GTISVFDVTRAKFLHH-LEGHFM--PVRSLVYSPVDPRVLFSASDD  222 (315)
Q Consensus       151 ~~~~~~~~~~i~~~~~~~~~~~l-~~~s~d----g~i~i~d~~~~~~~~~-~~~~~~--~v~~~~~~~~~~~~l~s~~~d  222 (315)
                            .........|+. |+.| +....+    ..|..+|+.+...... +..+..  .+..+.+.  +..++++...+
T Consensus       318 ------~~~~~~s~~~~~-g~~l~~~t~~~~a~~~~L~~~d~~~~~~~~~~li~~~~~~~l~~~~~~--~~~lv~~~~~~  388 (751)
T 2xe4_A          318 ------EKGVRYDVQMHG-TSHLVILTNEGGAVNHKLLIAPRGQPSDWSHVLVDHSEDVFMESIAVR--SNYLVVAGRRA  388 (751)
T ss_dssp             ------CTTCCEEEEEET-TTEEEEEECTTTCTTCEEEEEETTSTTCCCCEEECCCSSEEEEEEEEC--SSEEEEEEEET
T ss_pred             ------CCCceEEEeeee-CCEEEEEeCCCCCCCcEEEEEcCCCcccceeeEECCCCCcEEEEEEEE--CCEEEEEEEeC
Confidence                  011123344443 5544 444333    3577777764211222 223333  33444443  56677777777


Q ss_pred             Ce--EEEEeC
Q 021247          223 TH--VHMYDA  230 (315)
Q Consensus       223 ~~--i~~wd~  230 (315)
                      +.  |.++++
T Consensus       389 g~~~l~~~dl  398 (751)
T 2xe4_A          389 GLTRIWTMMA  398 (751)
T ss_dssp             TEEEEEEEEC
T ss_pred             CEEEEEEEec
Confidence            75  556665

>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*

Probab=98.46  E-value=0.00013  Score=65.66  Aligned_cols=221  Identities=8%  Similarity=0.001  Sum_probs=125.6

Q ss_pred             CCCeEEEEECCCCc-eeEEeeCCcccEEEEEECCCCCeEEEEecCCCeEEEEecCCcceeeeecCCCCCCCCCCccCCCC
Q 021247           80 LDSFVRVFDVDTNA-SIATLEASPSEVWQMQFDPKGTTLAVAGGGSASVKLWDTATWNLIATLSIPRPEGLKPTDKSSSK  158 (315)
Q Consensus        80 ~d~~i~~w~~~~~~-~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~  158 (315)
                      ....|+..++.... ..............++|++.++.++++-...+.|..+++........+..            ...
T Consensus        16 ~~~~I~~i~~~~~~~~~~~~~~~~~~~~~ld~~~~~~~ly~sD~~~~~I~r~~~~g~~~~~~v~~------------~~~   83 (619)
T 3s94_A           16 NRRDLRLVDATNGKENATIVVGGLEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVV------------SGL   83 (619)
T ss_dssp             CSSBEEEECCC---------CBCCSCEEEEEEETTTTEEEEEETTTTEEEEEEC-----CEEEEC------------SSC
T ss_pred             ccccEEEEeCCCCcceEEEEEcCCCceEEEEEEeCCCEEEEEECCCCeEEEEEccCCCceEEEEe------------CCC
Confidence            35668888887543 22222223445778999998888888766678888888765321111110            011


Q ss_pred             cceEEEEECCCCC-EEEEecCCCcEEEEEcccceeeeeecCCccceEEEEEcCCCCcEEEEEe-CCCeEEEEeCCCCeeE
Q 021247          159 KFVLSVAWSPDGR-RIACGSMDGTISVFDVTRAKFLHHLEGHFMPVRSLVYSPVDPRVLFSAS-DDTHVHMYDAEGKSLV  236 (315)
Q Consensus       159 ~~i~~~~~~~~~~-~l~~~s~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~-~d~~i~~wd~~~~~~~  236 (315)
                      .....+++.+.++ ++++-...+.|.+.++................+.+++.|.++.++++-. ..+.|...++.+....
T Consensus        84 ~~P~GlAvD~~~~~ly~~d~~~~~I~v~~~dG~~~~~l~~~~l~~P~~Iavdp~~g~ly~tD~g~~~~I~r~~~dG~~~~  163 (619)
T 3s94_A           84 LSPDGLACDWLGEKLYWTDSETNRIEVSNLDGSLRKVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSRF  163 (619)
T ss_dssp             SCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCCEEEETTTTEEEEEECSSSCEEEEEETTSCSCE
T ss_pred             CCcCeEEEEecCCEEEEEeCCCCEEEEEECCCCCEEEEEeCCCCCCceEEEecCCCeEEEeccCCCCEEEEEECCCCceE
Confidence            2367899998555 5566677889999998654322222233445678999987776777653 3567888887765443


Q ss_pred             EEeecccccEEEEEEcCCCCeE-EEEeCCCcEEEEecCccceehcccccccceEEEEEeeCCCEEEEEeCCCcEEEee
Q 021247          237 TAMSGHASWVLSVDASPDGAAI-TTGSSDRTVKLWDLNMRAAMQSMTNHTDQVWGVSFRPLGGRVVSVSDDKSISLYE  313 (315)
Q Consensus       237 ~~~~~~~~~i~~~~~~~~~~~l-~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~i~i~~  313 (315)
                      ........+.+.+++++++..| ++-...+.|...+++.........+......++++..+ ....+-...+.|...|
T Consensus       164 ~l~~~~~~~P~Glald~~~~~LY~aD~~~~~I~~~~~dG~~~~~~~~~~~~~P~gi~~~~~-~ly~td~~~~~V~~~d  240 (619)
T 3s94_A          164 IIINSEIYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDGTNRQAVVKGSLPHPFALTLFED-ILYWTDWSTHSILACN  240 (619)
T ss_dssp             EEECSSCSSEEEEEEETTTTEEEEEETTTCCEEEESSSCCEEC---------CCCEEESSS-EEEEECTTTCSEEEEE
T ss_pred             EEEeCCCCCCcEEEEEccCCEEEEEeCCCCeEEEecCCCCccEEEEeCCCCCceEEEEeCC-EEEEecCCCCEEEEEE
Confidence            3333445678999999865544 55556678988888743322222212223345666544 2233433445565544

>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A

Probab=98.37  E-value=3.9e-06  Score=76.79  Aligned_cols=219  Identities=11%  Similarity=0.012  Sum_probs=126.6

Q ss_pred             CCCeEEEEECCCCceeEEeeCCcccEEEEEECCCCCeEEEEecCCCeEEEEecCCc----ceeeeecCCCCCCCCCCccC
Q 021247           80 LDSFVRVFDVDTNASIATLEASPSEVWQMQFDPKGTTLAVAGGGSASVKLWDTATW----NLIATLSIPRPEGLKPTDKS  155 (315)
Q Consensus        80 ~d~~i~~w~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~~d~~~~----~~~~~~~~~~~~~~~~~~~~  155 (315)
                      ..+.|+..++........+.. ...+..++|++.+..++++-...+.|..+++...    .....+             .
T Consensus       384 ~~~~I~~id~~~~~~~~~~~~-~~~p~gla~d~~~~~Ly~sD~~~~~I~~~~~~g~~~~~~~~~~i-------------~  449 (699)
T 1n7d_A          384 NRHEVRKMTLDRSEYTSLIPN-LRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVI-------------S  449 (699)
T ss_dssp             CTTC-CEECTTSCCEECCSCC-CTTCCCCEEETTTTEEEECCTTTTSBEEEESCCCCC-CCCCCBC-------------C
T ss_pred             CccceEEEeCCCCcceeeecc-CcceEEEccccccCeEEEEecCCCeEEEEecCCCCCCcceEEEE-------------e
Confidence            345688888776554333322 2345678899887777777666788888887641    110000             0


Q ss_pred             CCCcceEEEEECCC-CCEEEEecCCCcEEEEEcccceeeeeecCCccceEEEEEcCCCCcEEEEEeCC-CeEEEEeCCCC
Q 021247          156 SSKKFVLSVAWSPD-GRRIACGSMDGTISVFDVTRAKFLHHLEGHFMPVRSLVYSPVDPRVLFSASDD-THVHMYDAEGK  233 (315)
Q Consensus       156 ~~~~~i~~~~~~~~-~~~l~~~s~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d-~~i~~wd~~~~  233 (315)
                      ........+++.+. ++++++-...+.|.++++........+.......+.+++.|.++.++++-... +.|.++++.+.
T Consensus       450 ~~~~~P~glavD~~~g~LY~tD~~~~~I~v~d~dg~~~~~l~~~~~~~P~giavDp~~g~ly~td~~~~~~I~~~~~dG~  529 (699)
T 1n7d_A          450 RDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFREQGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGV  529 (699)
T ss_dssp             SCC--CCCEECCCSSSBCEECCTTTSCEEEEBSSSCCEEEECCCSSCCCCCEECCSSSSCCEECCCSSSCCEEBCCSSSC
T ss_pred             CCCCCcceEEEEeeCCcEEEEeccCCeEEEEecCCCceEEEEeCCCCCcceEEEccCCCcEEEcccCCCCeEEEEeCCCC
Confidence            01112456888864 45556666778999999875443333332234457888888666666665443 78888887654


Q ss_pred             eeEEEeecccccEEEEEEcCCC-CeEEEEeCCCcEEEEecCccceehccc--ccccceEEEEEeeCCCEEEEEeCCCcEE
Q 021247          234 SLVTAMSGHASWVLSVDASPDG-AAITTGSSDRTVKLWDLNMRAAMQSMT--NHTDQVWGVSFRPLGGRVVSVSDDKSIS  310 (315)
Q Consensus       234 ~~~~~~~~~~~~i~~~~~~~~~-~~l~s~~~d~~i~iwd~~~~~~~~~~~--~~~~~v~~~~~s~~~~~l~s~~~d~~i~  310 (315)
                      .............+.|+++|++ ++.++-...+.|..++++.......+.  .......++++..+ ..+++-...+.|.
T Consensus       530 ~~~~l~~~~l~~PnGlavd~~~~~LY~aD~~~~~I~~~d~dG~~~~~~~~~~~~~~~P~glavd~~-~lywtd~~~~~V~  608 (699)
T 1n7d_A          530 DIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVFED-KVFWTDIINEAIF  608 (699)
T ss_dssp             CCCEESCSSCSSCCCEEECTTTCCEEEEETTTTEEEEECSSSSCCEEECCCSSSCSSCCCCEEETT-EEEEECSTTTCEE
T ss_pred             CeeEEEeCCCCCccEEEEeccCCEEEEEecCCCeEEEEccCCCceEEEEecCCcCCCceEeEEECC-EEEEEeCCCCeEE
Confidence            3322222234456789999875 455666667789999986432211111  11223445566443 3344555667887


Q ss_pred             Eee
Q 021247          311 LYE  313 (315)
Q Consensus       311 i~~  313 (315)
                      .++
T Consensus       609 ~~d  611 (699)
T 1n7d_A          609 SAN  611 (699)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            776

>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}

Probab=98.36  E-value=0.001  Score=57.70  Aligned_cols=246  Identities=11%  Similarity=0.045  Sum_probs=145.6

Q ss_pred             ceEEEEEeec-CCCCCcEEEEeeCCCcEEEEcCCCCcceeeccc---cccceEEEEe-------CCCCCEEEEeeCCC--
Q 021247           16 SVWAVTWVPA-TETRPALLLTGSLDETVKLWRPDDMQLERTNTG---HCLGVVSVAA-------HPSGIIAASASLDS--   82 (315)
Q Consensus        16 ~v~~v~~~~~-~~~~~~~l~sgs~d~~v~~w~~~~~~~~~~~~~---h~~~v~~~~~-------~~~g~~l~s~~~d~--   82 (315)
                      ....|+|.|. ..   .++++-...+.|++.|+.+..+......   .......++|       +++|..++.+...+  
T Consensus       140 ~p~~la~dp~~~~---~Lyv~~~~~~~i~~ID~~~~~v~~l~~~~~~~~~~p~~ia~~~~~~~~d~~G~~lyvad~~~~~  216 (496)
T 3kya_A          140 DNGRLAFDPLNKD---HLYICYDGHKAIQLIDLKNRMLSSPLNINTIPTNRIRSIAFNKKIEGYADEAEYMIVAIDYDGK  216 (496)
T ss_dssp             SEEEEEEETTEEE---EEEEEEETEEEEEEEETTTTEEEEEECCTTSSCSBEEEEEECCCBTTTBCTTCEEEEEECCCTT
T ss_pred             CCCEEEEccCCCC---EEEEEECCCCeEEEEECCCCEEEEEEccCccccCCCcEEEEeecccccCCCCCEEEEEeCCCCC
Confidence            5778899873 22   2444444446789999887666554432   2235889999       99998555554433  


Q ss_pred             -----eEEEEECCC-Ccee-----EEeeCCcccEEEEEECCCCCeEEEEecCCCeEEEEecC-------Ccce-------
Q 021247           83 -----FVRVFDVDT-NASI-----ATLEASPSEVWQMQFDPKGTTLAVAGGGSASVKLWDTA-------TWNL-------  137 (315)
Q Consensus        83 -----~i~~w~~~~-~~~~-----~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~~d~~-------~~~~-------  137 (315)
                           .|.+.+... +...     ..+.. ......++++|++..++++...++.|..+|+.       ++..       
T Consensus       217 ~~~~~~V~~i~r~~~G~~~~~~~~~~v~~-~~~p~giavdp~~g~LYvtd~~~g~V~r~d~~~~~~~~~tg~~~tp~~~~  295 (496)
T 3kya_A          217 GDESPSVYIIKRNADGTFDDRSDIQLIAA-YKQCNGATIHPINGELYFNSYEKGQVFRLDLVDYFKTIKNGGSWDPIVKN  295 (496)
T ss_dssp             GGGEEEEEEEECCTTSCCSTTSCEEEEEE-ESCCCCEEECTTTCCEEEEETTTTEEEEECHHHHHHHHHTTCCCCCBGGG
T ss_pred             cccCceEEEEecCCCCceeecccceeecc-CCCceEEEEcCCCCeEEEEECCCCEEEEEecccccccccCceeecccccc
Confidence                 266665443 1111     22221 12345778899777788888888999999987       3332       


Q ss_pred             ----eee-ecCCCCCCCCCCccCCCCcceEEEEECCCCCE-EEEecCCCcEEEEEcc--cceee--eeec------C---
Q 021247          138 ----IAT-LSIPRPEGLKPTDKSSSKKFVLSVAWSPDGRR-IACGSMDGTISVFDVT--RAKFL--HHLE------G---  198 (315)
Q Consensus       138 ----~~~-~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~-l~~~s~dg~i~i~d~~--~~~~~--~~~~------~---  198 (315)
                          ... +..            ....+...++|+|+|+. +++-+..+.|+.+|..  .+...  ..+-      +   
T Consensus       296 ~~g~~~~l~~~------------~~~~~p~~ia~~p~G~~lYvaD~~~h~I~kid~dg~~~~~~~~~~~aG~~g~~G~~D  363 (496)
T 3kya_A          296 NPNTFKQLFTI------------ADPSWEFQIFIHPTGKYAYFGVINNHYFMRSDYDEIKKEFITPYNFVGGYKQSGYRD  363 (496)
T ss_dssp             CTTTEEEEEEC------------SSSSCCEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEECCCEEEEEBTTBCCCBC
T ss_pred             cccccceeEec------------CCCCCceEEEEcCCCCEEEEEeCCCCEEEEEecCCCcceecccEEecCCCCCCcccC
Confidence                011 111            11223578999999995 4556778889996653  33210  1111      1   


Q ss_pred             ------CccceE-EEEEcC------CCCcEEEEEeCCCeEEEEeCCCCeeEEEeecc-----------------------
Q 021247          199 ------HFMPVR-SLVYSP------VDPRVLFSASDDTHVHMYDAEGKSLVTAMSGH-----------------------  242 (315)
Q Consensus       199 ------~~~~v~-~~~~~~------~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~-----------------------  242 (315)
                            ...... .+....      .++.++++=...+.|+.++..+ . +..+.+.                       
T Consensus       364 G~~~~a~f~~P~~gv~vd~~~~~~~~~g~lyVaD~~N~rIr~i~~~G-~-v~TiaG~g~~~~~~~~~~~G~~dG~~~~~a  441 (496)
T 3kya_A          364 DVGTEARMNNPCQGVFVKNPDYTGEEEYDFYFVDRLNFCVRKVTPEG-I-VSTYAGRGASTSLADGNQWGTDDGDLREVA  441 (496)
T ss_dssp             CBGGGCBCSSEEEEEEEECTTCCSSCCEEEEEEEGGGTEEEEECTTC-B-EEEEEESCTTHHHHHSCSCCCCCEETTTTC
T ss_pred             CcccccccCCCeEEEEEccccccccCCCeEEEEECCCCEEEEEeCCC-C-EEEEecccccccccCccccccCCCCchhhh
Confidence                  111233 334431      2456777777788999998543 2 3333221                       


Q ss_pred             -cccEEEEEEcCC-CCeEEEEeCCCcEEEEecCccceeh
Q 021247          243 -ASWVLSVDASPD-GAAITTGSSDRTVKLWDLNMRAAMQ  279 (315)
Q Consensus       243 -~~~i~~~~~~~~-~~~l~s~~~d~~i~iwd~~~~~~~~  279 (315)
                       -.....|+++++ +.+.++=..+.+||.+++......+
T Consensus       442 ~f~~P~gIavd~~~g~lyVaD~~N~rIrki~~~~~~~~~  480 (496)
T 3kya_A          442 RFRDVSGLVYDDVKEMFYVHDQVGHTIRTISMEQEENVA  480 (496)
T ss_dssp             CCSSEEEEEEETTTTEEEEEETTTTEEEEEEECCCC---
T ss_pred             hcCCCcEEEEECCCCEEEEEeCCCCEEEEEECCCCcccc
Confidence             124678999996 7777777778889999887644433

>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}

Probab=98.34  E-value=0.00077  Score=55.65  Aligned_cols=267  Identities=10%  Similarity=0.075  Sum_probs=141.4

Q ss_pred             ccceEEEEEeecCCCCCcEEEEeeCCCcEEEEcCCCCcceee--c--cccccceEEEEeCCCCCEEEEeeCCCeEEEEEC
Q 021247           14 EESVWAVTWVPATETRPALLLTGSLDETVKLWRPDDMQLERT--N--TGHCLGVVSVAAHPSGIIAASASLDSFVRVFDV   89 (315)
Q Consensus        14 ~~~v~~v~~~~~~~~~~~~l~sgs~d~~v~~w~~~~~~~~~~--~--~~h~~~v~~~~~~~~g~~l~s~~~d~~i~~w~~   89 (315)
                      ...+.+|.|.+...    .++ ++.+|.|... .+.++.-..  .  ......+..+.+++ +..++ ++.++.|.. ..
T Consensus        35 ~~~~~~v~~~~~~~----~~~-~G~~g~i~~s-~DgG~tW~~~~~~~~~~~~~~~~i~~~~-~~~~~-~g~~g~i~~-S~  105 (327)
T 2xbg_A           35 TATILDMSFIDRHH----GWL-VGVNATLMET-RDGGQTWEPRTLVLDHSDYRFNSVSFQG-NEGWI-VGEPPIMLH-TT  105 (327)
T ss_dssp             SSCEEEEEESSSSC----EEE-EETTTEEEEE-SSTTSSCEECCCCCSCCCCEEEEEEEET-TEEEE-EEETTEEEE-ES
T ss_pred             CCcEEEEEECCCCc----EEE-EcCCCeEEEe-CCCCCCCeECCCCCCCCCccEEEEEecC-CeEEE-EECCCeEEE-EC
Confidence            34788888865433    345 5567765333 332221111  1  11244678888876 44444 455665544 33


Q ss_pred             CCCceeEEeeC---CcccEEEEEECCCCCeEEEEecCCCeEEE-Eec-CCcceeeeecCCCCCCCCCCccCCCCcceEEE
Q 021247           90 DTNASIATLEA---SPSEVWQMQFDPKGTTLAVAGGGSASVKL-WDT-ATWNLIATLSIPRPEGLKPTDKSSSKKFVLSV  164 (315)
Q Consensus        90 ~~~~~~~~~~~---~~~~v~~~~~~~~~~~~~~~~~~d~~i~~-~d~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~  164 (315)
                      +.++.-.....   .+..+..+.+.+++. +++++ .++.|.. .|- .+++.+   ..+            ....+..+
T Consensus       106 DgG~tW~~~~~~~~~~~~~~~i~~~~~~~-~~~~~-~~g~v~~S~DgG~tW~~~---~~~------------~~~~~~~~  168 (327)
T 2xbg_A          106 DGGQSWSQIPLDPKLPGSPRLIKALGNGS-AEMIT-NVGAIYRTKDSGKNWQAL---VQE------------AIGVMRNL  168 (327)
T ss_dssp             STTSSCEECCCCTTCSSCEEEEEEEETTE-EEEEE-TTCCEEEESSTTSSEEEE---ECS------------CCCCEEEE
T ss_pred             CCCCCceECccccCCCCCeEEEEEECCCC-EEEEe-CCccEEEEcCCCCCCEEe---ecC------------CCcceEEE
Confidence            33443333221   234566777665554 44444 3454432 221 122211   111            11236789


Q ss_pred             EECCCCCEEEEecCCCcEEEEEc--ccceeeeeecCCccceEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCeeEEEee-c
Q 021247          165 AWSPDGRRIACGSMDGTISVFDV--TRAKFLHHLEGHFMPVRSLVYSPVDPRVLFSASDDTHVHMYDAEGKSLVTAMS-G  241 (315)
Q Consensus       165 ~~~~~~~~l~~~s~dg~i~i~d~--~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~-~  241 (315)
                      .+.+++.+++++...+..+-.|-  .+-+.+  -......+..+.+.+. +.+ +.++.+|.+++.+...+..-..+. .
T Consensus       169 ~~~~~~~~~~~g~~G~~~~S~d~gG~tW~~~--~~~~~~~~~~~~~~~~-g~~-~~~~~~G~~~~s~~D~G~tW~~~~~~  244 (327)
T 2xbg_A          169 NRSPSGEYVAVSSRGSFYSTWEPGQTAWEPH--NRTTSRRLHNMGFTPD-GRL-WMIVNGGKIAFSDPDNSENWGELLSP  244 (327)
T ss_dssp             EECTTSCEEEEETTSSEEEEECTTCSSCEEE--ECCSSSCEEEEEECTT-SCE-EEEETTTEEEEEETTEEEEECCCBCT
T ss_pred             EEcCCCcEEEEECCCcEEEEeCCCCCceeEC--CCCCCCccceeEECCC-CCE-EEEeCCceEEEecCCCCCeeEeccCC
Confidence            99998888777654443444442  122222  1233456778888774 444 455567877776433232222111 1


Q ss_pred             ---ccccEEEEEEcCCCCeEEEEeCCCcEEEEecCccceehcccc---cccceEEEEEeeCCCEEEEEeCCCcEEEee
Q 021247          242 ---HASWVLSVDASPDGAAITTGSSDRTVKLWDLNMRAAMQSMTN---HTDQVWGVSFRPLGGRVVSVSDDKSISLYE  313 (315)
Q Consensus       242 ---~~~~i~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~---~~~~v~~~~~s~~~~~l~s~~~d~~i~i~~  313 (315)
                         +...+.++.+.+++.+++++ .++.| ++..+.++....+..   ....+.++.|.++ ..++.++.+|+|.-++
T Consensus       245 ~~~~~~~~~~v~~~~~~~~~~~g-~~g~i-~~S~DgG~tW~~~~~~~~~~~~~~~v~~~~~-~~~~~~G~~G~i~~~~  319 (327)
T 2xbg_A          245 LRRNSVGFLDLAYRTPNEVWLAG-GAGAL-LCSQDGGQTWQQDVDVKKVPSNFYKILFFSP-DQGFILGQKGILLRYV  319 (327)
T ss_dssp             TSSCCSCEEEEEESSSSCEEEEE-STTCE-EEESSTTSSCEECGGGTTSSSCCCEEEEEET-TEEEEECSTTEEEEEC
T ss_pred             cccCCcceEEEEecCCCEEEEEe-CCCeE-EEeCCCCcccEEcCccCCCCCCeEEEEEECC-CceEEEcCCceEEEEc
Confidence               22357889999887766654 46766 444555555444332   2356788989765 4688888999886654

>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}

Probab=98.30  E-value=0.00052  Score=55.96  Aligned_cols=200  Identities=10%  Similarity=0.076  Sum_probs=124.5

Q ss_pred             EEEEECCCCCeEEEEecCCCeEEEEecCCcceeeeecCCCCCCCCCCccCCCCcceEEEEE---CCCCCEEEEec-----
Q 021247          106 WQMQFDPKGTTLAVAGGGSASVKLWDTATWNLIATLSIPRPEGLKPTDKSSSKKFVLSVAW---SPDGRRIACGS-----  177 (315)
Q Consensus       106 ~~~~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~---~~~~~~l~~~s-----  177 (315)
                      .+.+|++....++++.-..++|..||...+..... .++...     ........+..+.|   .|+++++++..     
T Consensus        16 E~~~wd~~~g~~~vs~l~~g~V~~~~~~~~~~~~~-~~~~~s-----~~g~~~~~~sGl~~~~~D~~grL~vv~~~~~af   89 (334)
T 2p9w_A           16 EDTIYDRTRQVFYQSNLYKGRIEVYNPKTQSHFNV-VIDGAS-----SNGDGEQQMSGLSLLTHDNSKRLFAVMKNAKSF   89 (334)
T ss_dssp             SCEEEETTTTEEEEEETTTTEEEEECTTTCCEEEE-CCTTTC-----CSSCCSEEEEEEEESSSSSCCEEEEEEEETTTT
T ss_pred             cCccCcCCCCEEEEEeccCCEEEEEcCCCCeEEEE-ecCCcc-----ccCCCcceeeEEEEeccCCCCcEEEEEcccccc
Confidence            46789887777878777899999999875433322 222100     00011224689999   68877777533     


Q ss_pred             --------CCCcEEEEEcc---cceeeeeec--CC-----------ccceEEEEEcCCCCcEEEEEeCC-CeEEEEeCCC
Q 021247          178 --------MDGTISVFDVT---RAKFLHHLE--GH-----------FMPVRSLVYSPVDPRVLFSASDD-THVHMYDAEG  232 (315)
Q Consensus       178 --------~dg~i~i~d~~---~~~~~~~~~--~~-----------~~~v~~~~~~~~~~~~l~s~~~d-~~i~~wd~~~  232 (315)
                              .+..+..||+.   +++.+....  ..           .....+++..+ +++..++++.- +.|...+..+
T Consensus        90 ~~~g~~~~g~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~-~GnaYVt~s~~~~~I~rV~pdG  168 (334)
T 2p9w_A           90 NFADQSSHGASSFHSFNLPLSENSKPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQDR-DGNSYVAFALGMPAIARVSADG  168 (334)
T ss_dssp             CTTSCCSSSCCEEEEEESSCCTTCCCSEEEESHHHHHHHHHHHSSCCEEEEEEEECT-TSCEEEEEEESSCEEEEECTTS
T ss_pred             cccccccCCCCEEEEEcCCcCCCCCEEEEecCccccccccccccccccCCceeEECC-CCCEEEeCCCCCCeEEEEeCCC
Confidence                    25779999998   676554332  11           12478899987 67788888887 8898888876


Q ss_pred             CeeEEEeec-----ccccEEEEEEcCCCCeEEEEeCCCcEEEEecCccce--ehccc--cc---ccceEEE-EEeeCCCE
Q 021247          233 KSLVTAMSG-----HASWVLSVDASPDGAAITTGSSDRTVKLWDLNMRAA--MQSMT--NH---TDQVWGV-SFRPLGGR  299 (315)
Q Consensus       233 ~~~~~~~~~-----~~~~i~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~--~~~~~--~~---~~~v~~~-~~s~~~~~  299 (315)
                      .........     .....+.++++|++..|++...+|.+..+|++....  +. ..  +.   -.....+ ..-.+|+.
T Consensus       169 ~~~~~~~~~~~~~~~~~G~nGIv~~pdg~~Liv~~~~g~L~~fD~~~pv~~~v~-~~~~G~~~~~~~~dgilp~~~~G~v  247 (334)
T 2p9w_A          169 KTVSTFAWESGNGGQRPGYSGITFDPHSNKLIAFGGPRALTAFDVSKPYAWPEP-VKINGDFGTLSGTEKIVTVPVGNES  247 (334)
T ss_dssp             CCEEEEEECCCCSSSCCSCSEEEEETTTTEEEEESSSSSEEEEECSSSSCCCEE-CEESSCCCCCTTEEEEEEEEETTEE
T ss_pred             CEEeeeeecCCCcccccCcceEEEeCCCCEEEEEcCCCeEEEEcCCCCcceeec-ccccCCcccccCcccccccccCCEE
Confidence            633322211     122356899999999888887799999999874322  11 11  21   1223343 33446666


Q ss_pred             -EEEEeCCCcEEEee
Q 021247          300 -VVSVSDDKSISLYE  313 (315)
Q Consensus       300 -l~s~~~d~~i~i~~  313 (315)
                       |++.+..+.+.+.+
T Consensus       248 llV~~~~~~~~~l~S  262 (334)
T 2p9w_A          248 VLVGARAPYAISFRS  262 (334)
T ss_dssp             EEEEEETTEEEEEEC
T ss_pred             EEEEcCCCCEEEEEC
Confidence             45555566665543

>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A

Probab=98.10  E-value=0.0027  Score=52.30  Aligned_cols=205  Identities=11%  Similarity=0.235  Sum_probs=120.9

Q ss_pred             EEEeCC---CCCEEEEeeCCCeEEEEECCCCceeEEeeCCcccEEEEEECCC----CCe--E-EEEecC--CCeEEEEec
Q 021247           65 SVAAHP---SGIIAASASLDSFVRVFDVDTNASIATLEASPSEVWQMQFDPK----GTT--L-AVAGGG--SASVKLWDT  132 (315)
Q Consensus        65 ~~~~~~---~g~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~v~~~~~~~~----~~~--~-~~~~~~--d~~i~~~d~  132 (315)
                      .+..+|   ...+++....++-+.++|+ +++.++.+..  ..+..+..-|.    ++.  + +++.-.  +++|.+|++
T Consensus        30 avw~~~~dp~~s~ii~t~k~~gL~Vydl-~G~~l~~~~~--g~~nnVD~r~~~~l~g~~~dla~as~R~~~~n~l~vf~i  106 (355)
T 3amr_A           30 AIWLDPKTPQNSKLITTNKKSGLVVYSL-DGKMLHSYNT--GKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAI  106 (355)
T ss_dssp             EEECCSSCGGGCEEEEEETTTEEEEEET-TSCEEEEECC--SCEEEEEEEEEEEETTEEEEEEEEEECSTTCCEEEEEEE
T ss_pred             cEecCCCCCCccEEEEEcCCCCEEEEcC-CCcEEEEccC--CCcccEEEecccccCCceEeEEEEeCCCCCCCeEEEEEE
Confidence            444554   3456777777889999999 7787777753  44555555442    221  3 344444  689999977


Q ss_pred             C-CcceeeeecCC-CCCCCCCCccCCCCcceEEEEE--CCC-CC-EEEEecCCCcEEEEEcc-------cceeeeeecCC
Q 021247          133 A-TWNLIATLSIP-RPEGLKPTDKSSSKKFVLSVAW--SPD-GR-RIACGSMDGTISVFDVT-------RAKFLHHLEGH  199 (315)
Q Consensus       133 ~-~~~~~~~~~~~-~~~~~~~~~~~~~~~~i~~~~~--~~~-~~-~l~~~s~dg~i~i~d~~-------~~~~~~~~~~~  199 (315)
                      . ..+.+..+... .+     .  ......+..+|+  +|. +. ++++...+|.+..|++.       +.+.+.++...
T Consensus       107 Dp~~~~l~~i~~~~~p-----v--~t~~~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~g~~~~~lVR~f~lg  179 (355)
T 3amr_A          107 DGKNGTLQSMTDPDHP-----I--ATAINEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKNGYISGKKVRAFKMN  179 (355)
T ss_dssp             CTTTCCEEECSCTTSC-----E--ECCCSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSCEEEEEEEEEECS
T ss_pred             CCCCCceeeccccccC-----c--CCCCCCeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCCCcccceEEEEecCC
Confidence            3 12223333110 00     0  000022456666  774 43 67788889999999882       34555665543


Q ss_pred             ccceEEEEEcCCCCcEEEEEeCCCeEEEEeCC-----CCeeEEEee-ccc-ccEEEEEE--cCCCC-eEEEEe-CCCcEE
Q 021247          200 FMPVRSLVYSPVDPRVLFSASDDTHVHMYDAE-----GKSLVTAMS-GHA-SWVLSVDA--SPDGA-AITTGS-SDRTVK  268 (315)
Q Consensus       200 ~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~-----~~~~~~~~~-~~~-~~i~~~~~--~~~~~-~l~s~~-~d~~i~  268 (315)
                       ..+..+...+ ....|+.+-.+.-|..|+.+     ..+++.... ++. ..+..+++  .++++ +|++++ .+.+..
T Consensus       180 -sq~EgcvvDd-~~g~Lyv~eEd~GIw~~da~p~~~~~~~~v~~~~~g~l~aDvEGLai~~~~~g~gyLivSsQG~~s~~  257 (355)
T 3amr_A          180 -SQTEGMAADD-EYGRLYIAEEDEAIWKFSAEPDGGSNGTVIDRADGRHLTRDIEGLTIYYAADGKGYLMASSQGNSSYA  257 (355)
T ss_dssp             -SCEEEEEEET-TTTEEEEEETTTEEEEEECSTTSCSCCEEEEEBSSSSBCSCEEEEEEEECGGGCEEEEEEEGGGTEEE
T ss_pred             -CCcceEEEcC-CCCeEEEecccceEEEEeCCcCCCCCceEEEEecCCccccCcceEEEEecCCCCEEEEEEcCCCCEEE
Confidence             3556667776 45577788887778888855     234554432 222 35777777  45555 555555 677899


Q ss_pred             EEecC-ccceehcc
Q 021247          269 LWDLN-MRAAMQSM  281 (315)
Q Consensus       269 iwd~~-~~~~~~~~  281 (315)
                      +||.. ..+.+..+
T Consensus       258 Vydr~~~~~~vg~f  271 (355)
T 3amr_A          258 IYDRQGKNKYVADF  271 (355)
T ss_dssp             EEESSTTCCEEEEE
T ss_pred             EEECCCCCcEEEEE
Confidence            99996 44444333

>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}

Probab=98.07  E-value=0.0035  Score=52.27  Aligned_cols=229  Identities=15%  Similarity=0.108  Sum_probs=122.8

Q ss_pred             ceEEEEeCCCCCEEEEeeCCCeEEEEECCCCce--eEEee---CCcccEEEEEECCC---CCeEEEEecCC-----CeEE
Q 021247           62 GVVSVAAHPSGIIAASASLDSFVRVFDVDTNAS--IATLE---ASPSEVWQMQFDPK---GTTLAVAGGGS-----ASVK  128 (315)
Q Consensus        62 ~v~~~~~~~~g~~l~s~~~d~~i~~w~~~~~~~--~~~~~---~~~~~v~~~~~~~~---~~~~~~~~~~d-----~~i~  128 (315)
                      ....+.+.|+|.++++ ..++.|++++  ++..  +..+.   ........++++|+   +..++++-...     ..|.
T Consensus        32 ~P~~ia~~pdG~l~V~-e~~g~I~~i~--~g~~~~~~~~~v~~~g~~~p~gia~~pdf~~~g~lYv~~~~~~~~~~~~v~  108 (352)
T 2ism_A           32 VPWALAFLPDGGMLIA-ERPGRIRLFR--EGRLSTYAELSVYHRGESGLLGLALHPRFPQEPYVYAYRTVAEGGLRNQVV  108 (352)
T ss_dssp             CEEEEEECTTSCEEEE-ETTTEEEEEE--TTEEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEECTTSSEEEEE
T ss_pred             CceEEEEcCCCeEEEE-eCCCeEEEEE--CCCccEeecceEeecCCCCceeEEECCCCCCCCEEEEEEecCCCCCccEEE
Confidence            4678999999986665 5569999998  3332  11111   12346789999998   56666654432     5677


Q ss_pred             EEecCCccee--ee-ec-CCCCCCCCCCccCCCCcceEEEEECCCCCEEEEecC-------------CCcEEEEEcccc-
Q 021247          129 LWDTATWNLI--AT-LS-IPRPEGLKPTDKSSSKKFVLSVAWSPDGRRIACGSM-------------DGTISVFDVTRA-  190 (315)
Q Consensus       129 ~~d~~~~~~~--~~-~~-~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~s~-------------dg~i~i~d~~~~-  190 (315)
                      .++....+..  .. +. ++...        ........++|.|+|.+.++.+.             .|.|.-++.... 
T Consensus       109 r~~~~~~~~~~~~~l~~~~p~~~--------~~~h~~~~l~~~pdG~Lyv~~G~~~~~~~~~d~~~~~g~I~ri~~dG~~  180 (352)
T 2ism_A          109 RLRHLGERGVLDRVVLDGIPARP--------HGLHSGGRIAFGPDGMLYVTTGEVYERELAQDLASLGGKILRLTPEGEP  180 (352)
T ss_dssp             EEEECSSCEEEEEEEEEEECCCT--------TCCCCCCCEEECTTSCEEEECCCTTCGGGGGCTTCSSSEEEEECTTSSB
T ss_pred             EEEeCCCCcCceEEEEEeCCCCC--------CCCcCCceEEECCCCCEEEEECCCCCCccccCCCCCceEEEEEcCCCCC
Confidence            7776543211  11 11 11000        01112357999999976665322             256666665430 


Q ss_pred             -----------eeeee-ecCCccceEEEEEcCCCCcEEEEEeCCCe--------EEEEeCCC----------------Ce
Q 021247          191 -----------KFLHH-LEGHFMPVRSLVYSPVDPRVLFSASDDTH--------VHMYDAEG----------------KS  234 (315)
Q Consensus       191 -----------~~~~~-~~~~~~~v~~~~~~~~~~~~l~s~~~d~~--------i~~wd~~~----------------~~  234 (315)
                                 ..... ..++ .....++|+|.++.++++-.....        |.+...-.                ..
T Consensus       181 p~~npf~~~~~~~~~i~a~G~-rnp~g~a~d~~~g~l~v~d~g~~~~~~~~~dei~~i~~G~nyGwp~~~g~~~~~~~~~  259 (352)
T 2ism_A          181 APGNPFLGRRGARPEVYSLGH-RNPQGLAWHPKTGELFSSEHGPSGEQGYGHDEVNLIVPGGNYGWPRVVGRGNDPRYRD  259 (352)
T ss_dssp             CTTCTTTTCTTSCTTEEEECC-SEECCCEECTTTCCEEEEEECC------CCCEEEEECTTCBCCTTTCCSCCCCTTSCC
T ss_pred             CCCCcccCCCCCCccEEEEcC-CCcccEEEECCCCCEEEEEcCCCCCCCCCCeEEEEeccCCcCCCCcccCCCCCCCCcC
Confidence                       00011 1122 234677888855666655443332        43332111                01


Q ss_pred             eEEEeecccccEEEEEEcCCCCeEEEEeCCCcEEEEecCccce------ehcccccccceEEEEEeeCCCEEEEEe
Q 021247          235 LVTAMSGHASWVLSVDASPDGAAITTGSSDRTVKLWDLNMRAA------MQSMTNHTDQVWGVSFRPLGGRVVSVS  304 (315)
Q Consensus       235 ~~~~~~~~~~~i~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~------~~~~~~~~~~v~~~~~s~~~~~l~s~~  304 (315)
                      .+..+ .+......+++ .+|.++++.-..+.|...+++....      ...+......+..+++.|||...++..
T Consensus       260 p~~~~-~~~~ap~G~~~-~~G~l~v~~~~~~~v~~v~~~~~~~~~~~~~~~~~~~~~~rp~~v~~~pdG~lyv~~~  333 (352)
T 2ism_A          260 PLYFW-PQGFPPGNLAF-FRGDLYVAGLRGQALLRLVLEGERGRWRVLRVETALSGFGRLREVQVGPDGALYVTTS  333 (352)
T ss_dssp             CSEEC-TTCCCEEEEEE-ETTEEEEEETTTTEEEEEEEEEETTEEEEEEEEEEEESSCCEEEEEECTTSCEEEEEC
T ss_pred             CeEec-CCCCCCcceEE-ECCEEEEEECCCCEEEEEEECCCCcceeecchheecccCCCeeEEEECCCCcEEEEEe
Confidence            11122 12234566777 4677666666677788777764321      111212235788999999998766653

>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}

Probab=98.06  E-value=0.00065  Score=55.42  Aligned_cols=152  Identities=9%  Similarity=0.185  Sum_probs=100.0

Q ss_pred             eEEEEECCCCCEEEEe-cCCCcEEEEEcccceeeee-ecC----C--ccceEEEEE---cCCCCcEEEEEe---------
Q 021247          161 VLSVAWSPDGRRIACG-SMDGTISVFDVTRAKFLHH-LEG----H--FMPVRSLVY---SPVDPRVLFSAS---------  220 (315)
Q Consensus       161 i~~~~~~~~~~~l~~~-s~dg~i~i~d~~~~~~~~~-~~~----~--~~~v~~~~~---~~~~~~~l~s~~---------  220 (315)
                      ..+++|++....|..+ -..++|..||...+..... +.+    .  ...+..+.|   .|. ++++++..         
T Consensus        15 PE~~~wd~~~g~~~vs~l~~g~V~~~~~~~~~~~~~~~~~~s~~g~~~~~~sGl~~~~~D~~-grL~vv~~~~~af~~~g   93 (334)
T 2p9w_A           15 PEDTIYDRTRQVFYQSNLYKGRIEVYNPKTQSHFNVVIDGASSNGDGEQQMSGLSLLTHDNS-KRLFAVMKNAKSFNFAD   93 (334)
T ss_dssp             CSCEEEETTTTEEEEEETTTTEEEEECTTTCCEEEECCTTTCCSSCCSEEEEEEEESSSSSC-CEEEEEEEETTTTCTTS
T ss_pred             CcCccCcCCCCEEEEEeccCCEEEEEcCCCCeEEEEecCCccccCCCcceeeEEEEeccCCC-CcEEEEEcccccccccc
Confidence            4478998865555555 4789999999975543222 221    1  113578899   564 66776543         


Q ss_pred             ----CCCeEEEEeCC---CCeeEEEee--cc-----------cccEEEEEEcCCCCeEEEEeCC-CcEEEEecCccceeh
Q 021247          221 ----DDTHVHMYDAE---GKSLVTAMS--GH-----------ASWVLSVDASPDGAAITTGSSD-RTVKLWDLNMRAAMQ  279 (315)
Q Consensus       221 ----~d~~i~~wd~~---~~~~~~~~~--~~-----------~~~i~~~~~~~~~~~l~s~~~d-~~i~iwd~~~~~~~~  279 (315)
                          .+..+..||+.   +++.+....  ..           .....+++.+++|+..++++.. +.|...+.+.. .+.
T Consensus        94 ~~~~g~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~~GnaYVt~s~~~~~I~rV~pdG~-~~~  172 (334)
T 2p9w_A           94 QSSHGASSFHSFNLPLSENSKPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQDRDGNSYVAFALGMPAIARVSADGK-TVS  172 (334)
T ss_dssp             CCSSSCCEEEEEESSCCTTCCCSEEEESHHHHHHHHHHHSSCCEEEEEEEECTTSCEEEEEEESSCEEEEECTTSC-CEE
T ss_pred             cccCCCCEEEEEcCCcCCCCCEEEEecCccccccccccccccccCCceeEECCCCCEEEeCCCCCCeEEEEeCCCC-EEe
Confidence                26789999998   555443322  11           1348899999999998988888 87766665532 221


Q ss_pred             cc------cccccceEEEEEeeCCCEEEEEeCCCcEEEeec
Q 021247          280 SM------TNHTDQVWGVSFRPLGGRVVSVSDDKSISLYEY  314 (315)
Q Consensus       280 ~~------~~~~~~v~~~~~s~~~~~l~s~~~d~~i~i~~~  314 (315)
                      .+      .......+.++++|+|..|+....+|.+.-||+
T Consensus       173 ~~~~~~~~~~~~~G~nGIv~~pdg~~Liv~~~~g~L~~fD~  213 (334)
T 2p9w_A          173 TFAWESGNGGQRPGYSGITFDPHSNKLIAFGGPRALTAFDV  213 (334)
T ss_dssp             EEEECCCCSSSCCSCSEEEEETTTTEEEEESSSSSEEEEEC
T ss_pred             eeeecCCCcccccCcceEEEeCCCCEEEEEcCCCeEEEEcC
Confidence            11      111123679999999998887766999988875

>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...

Probab=97.97  E-value=0.015  Score=56.21  Aligned_cols=130  Identities=15%  Similarity=0.209  Sum_probs=71.7

Q ss_pred             EEEEEcccceeeeeecC-CccceEEEE---EcCCCCcEEEEEe----------CCCeEEEEeCCCCeeEEEe-ecccccE
Q 021247          182 ISVFDVTRAKFLHHLEG-HFMPVRSLV---YSPVDPRVLFSAS----------DDTHVHMYDAEGKSLVTAM-SGHASWV  246 (315)
Q Consensus       182 i~i~d~~~~~~~~~~~~-~~~~v~~~~---~~~~~~~~l~s~~----------~d~~i~~wd~~~~~~~~~~-~~~~~~i  246 (315)
                      |++.|..+.+.+..+.- ....+.+++   |......+++.|.          ..|.|++|+...+++.... ....+.+
T Consensus       809 i~lidp~t~~~i~~~~l~~nE~~~sv~~v~~~~~~~~~lvVGTa~~~~~e~~~~~Gri~vf~v~~~kL~lv~~~~v~g~v  888 (1158)
T 3ei3_A          809 LLIIDQHTFEVLHAHQFLQNEYALSLVSCKLGKDPNTYFIVGTAMVYPEEAEPKQGRIVVFQYSDGKLQTVAEKEVKGAV  888 (1158)
T ss_dssp             EEEEETTTCCEEEEEECCTTEEEEEEEEECCTTCCCCEEEEEEEECCTTCSSCCCEEEEEEEEETTEEEEEEEEEESSCE
T ss_pred             EEEEeCCCCeEEEEEeCCCCcceEEEEEEEEccCCCEEEEEEeeecCCCCCCCCceEEEEEEEECCEEEEEEEEEcCCcC
Confidence            56666665555444332 122334443   4332346777776          2478999998654433221 2336778


Q ss_pred             EEEEEcCCCCeEEEEeCCCcEEEEecCccceehcccccccceEEEEEeeCCCEEEEEeCCCcEEEeec
Q 021247          247 LSVDASPDGAAITTGSSDRTVKLWDLNMRAAMQSMTNHTDQVWGVSFRPLGGRVVSVSDDKSISLYEY  314 (315)
Q Consensus       247 ~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~i~i~~~  314 (315)
                      ++++-- +|+++++  ...+|++|++...+.+..-..+-..+..+.....+++++.|..-+.|.++.|
T Consensus       889 ~al~~~-~g~Lla~--ig~~l~vy~l~~~~~L~~~~~~~~~i~~~~l~~~~~~I~vgD~~~Sv~~~~y  953 (1158)
T 3ei3_A          889 YSMVEF-NGKLLAS--INSTVRLYEWTTEKELRTECNHYNNIMALYLKTKGDFILVGDLMRSVLLLAY  953 (1158)
T ss_dssp             EEEEEE-TTEEEEE--ETTEEEEEEECTTSCEEEEEEECCCSCEEEEEEETTEEEEEESSBCEEEEEE
T ss_pred             EEEeee-CCEEEEE--cCCEEEEEECCCCceEEEEeeccccEEEEEEeccCCEEEEEEhhheEEEEEE
Confidence            887633 4544443  3578999999765544311111122333344445778888877777776654

>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}

Probab=97.79  E-value=0.0038  Score=50.59  Aligned_cols=222  Identities=15%  Similarity=0.157  Sum_probs=111.0

Q ss_pred             cEEEEee-CC-----CcEEEEcCCCCcceee--ccccccceEEEEeCCCCCEEEEeeCC-----CeEEEEECCCCc---e
Q 021247           31 ALLLTGS-LD-----ETVKLWRPDDMQLERT--NTGHCLGVVSVAAHPSGIIAASASLD-----SFVRVFDVDTNA---S   94 (315)
Q Consensus        31 ~~l~sgs-~d-----~~v~~w~~~~~~~~~~--~~~h~~~v~~~~~~~~g~~l~s~~~d-----~~i~~w~~~~~~---~   94 (315)
                      .+++.|+ .+     ..+..||+.+.+-...  .+........+.  .++.+++.|+.+     ..+.++|+.+..   -
T Consensus        16 ~i~~~GG~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~--~~~~l~v~GG~~~~~~~~~~~~~d~~~~~~~~W   93 (301)
T 2vpj_A           16 VLLVVGGFGSQQSPIDVVEKYDPKTQEWSFLPSITRKRRYVASVS--LHDRIYVIGGYDGRSRLSSVECLDYTADEDGVW   93 (301)
T ss_dssp             EEEEECCEETTTEECCCEEEEETTTTEEEECCCCSSCCBSCEEEE--ETTEEEEECCBCSSCBCCCEEEEETTCCTTCCC
T ss_pred             EEEEEeCccCCCcceeEEEEEcCCCCeEEeCCCCChhhccccEEE--ECCEEEEEcCCCCCccCceEEEEECCCCCCCee
Confidence            3666676 33     3678888766542221  111111111222  256777777755     458899988776   3


Q ss_pred             eEEeeCCc--ccEEEEEECCCCCeEEEEecCC-----CeEEEEecCCcceeeeecCCCCCCCCCCccCCCCcceEEEEEC
Q 021247           95 IATLEASP--SEVWQMQFDPKGTTLAVAGGGS-----ASVKLWDTATWNLIATLSIPRPEGLKPTDKSSSKKFVLSVAWS  167 (315)
Q Consensus        95 ~~~~~~~~--~~v~~~~~~~~~~~~~~~~~~d-----~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~  167 (315)
                      ...-....  ..-..+.+  + ..+++.|+.+     ..+.+||..+.+....-..+.+       ...+    ..+.+ 
T Consensus        94 ~~~~~~p~~r~~~~~~~~--~-~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~-------r~~~----~~~~~-  158 (301)
T 2vpj_A           94 YSVAPMNVRRGLAGATTL--G-DMIYVSGGFDGSRRHTSMERYDPNIDQWSMLGDMQTA-------REGA----GLVVA-  158 (301)
T ss_dssp             EEECCCSSCCBSCEEEEE--T-TEEEEECCBCSSCBCCEEEEEETTTTEEEEEEECSSC-------CBSC----EEEEE-
T ss_pred             EECCCCCCCccceeEEEE--C-CEEEEEcccCCCcccceEEEEcCCCCeEEECCCCCCC-------cccc----eEEEE-
Confidence            22211111  11112222  2 3466666543     4688899877554433222111       1111    12222 


Q ss_pred             CCCCEEEEecCC-----CcEEEEEcccceeeee--ecCCccceEEEEEcCCCCcEEEEEeCC-----CeEEEEeCCCCee
Q 021247          168 PDGRRIACGSMD-----GTISVFDVTRAKFLHH--LEGHFMPVRSLVYSPVDPRVLFSASDD-----THVHMYDAEGKSL  235 (315)
Q Consensus       168 ~~~~~l~~~s~d-----g~i~i~d~~~~~~~~~--~~~~~~~v~~~~~~~~~~~~l~s~~~d-----~~i~~wd~~~~~~  235 (315)
                       +++.++.|+.+     ..+..||+.+.+....  +.........+.+   ++++++.|+.+     ..+.+||.++.+-
T Consensus       159 -~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~---~~~i~v~GG~~~~~~~~~v~~yd~~~~~W  234 (301)
T 2vpj_A          159 -SGVIYCLGGYDGLNILNSVEKYDPHTGHWTNVTPMATKRSGAGVALL---NDHIYVVGGFDGTAHLSSVEAYNIRTDSW  234 (301)
T ss_dssp             -TTEEEEECCBCSSCBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEE---TTEEEEECCBCSSSBCCCEEEEETTTTEE
T ss_pred             -CCEEEEECCCCCCcccceEEEEeCCCCcEEeCCCCCcccccceEEEE---CCEEEEEeCCCCCcccceEEEEeCCCCcE
Confidence             56677777654     4589999987765432  1111111122222   45677777764     4688999887643


Q ss_pred             EEE--eecccccEEEEEEcCCCCeEEEEeCC-----CcEEEEecCcc
Q 021247          236 VTA--MSGHASWVLSVDASPDGAAITTGSSD-----RTVKLWDLNMR  275 (315)
Q Consensus       236 ~~~--~~~~~~~i~~~~~~~~~~~l~s~~~d-----~~i~iwd~~~~  275 (315)
                      ...  +.........+.+  ++++++.|+.+     ..|.+||..+.
T Consensus       235 ~~~~~~p~~r~~~~~~~~--~~~i~v~GG~~~~~~~~~v~~yd~~~~  279 (301)
T 2vpj_A          235 TTVTSMTTPRCYVGATVL--RGRLYAIAGYDGNSLLSSIECYDPIID  279 (301)
T ss_dssp             EEECCCSSCCBSCEEEEE--TTEEEEECCBCSSSBEEEEEEEETTTT
T ss_pred             EECCCCCCcccceeEEEE--CCEEEEEcCcCCCcccccEEEEcCCCC
Confidence            222  1111111112222  56677777765     34677777653

>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}

Probab=97.77  E-value=0.0051  Score=50.03  Aligned_cols=223  Identities=10%  Similarity=0.086  Sum_probs=112.1

Q ss_pred             CcEEEEeeCC--CcEEEEcCCCCcceee--ccccccceEEEEeCCCCCEEEEeeCC----CeEEEEECCCCceeEEeeCC
Q 021247           30 PALLLTGSLD--ETVKLWRPDDMQLERT--NTGHCLGVVSVAAHPSGIIAASASLD----SFVRVFDVDTNASIATLEAS  101 (315)
Q Consensus        30 ~~~l~sgs~d--~~v~~w~~~~~~~~~~--~~~h~~~v~~~~~~~~g~~l~s~~~d----~~i~~w~~~~~~~~~~~~~~  101 (315)
                      +.+++.|+.+  ..+..||+.+.+-...  .+.....-..+.  .++.+++.|+.+    ..+.++|+.+++-...-...
T Consensus        12 ~~l~~~GG~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~--~~~~lyv~GG~~~~~~~~~~~~d~~~~~W~~~~~~p   89 (306)
T 3ii7_A           12 DYRIALFGGSQPQSCRYFNPKDYSWTDIRCPFEKRRDAACVF--WDNVVYILGGSQLFPIKRMDCYNVVKDSWYSKLGPP   89 (306)
T ss_dssp             CEEEEEECCSSTTSEEEEETTTTEEEECCCCSCCCBSCEEEE--ETTEEEEECCBSSSBCCEEEEEETTTTEEEEEECCS
T ss_pred             ceEEEEeCCCCCceEEEecCCCCCEecCCCCCcccceeEEEE--ECCEEEEEeCCCCCCcceEEEEeCCCCeEEECCCCC
Confidence            3466777654  5788888876542221  111111112222  256677777755    66888998877543222111


Q ss_pred             c--ccEEEEEECCCCCeEEEEecCC------CeEEEEecCCcceeeeecCCCCCCCCCCccCCCCcceEEEEECCCCCEE
Q 021247          102 P--SEVWQMQFDPKGTTLAVAGGGS------ASVKLWDTATWNLIATLSIPRPEGLKPTDKSSSKKFVLSVAWSPDGRRI  173 (315)
Q Consensus       102 ~--~~v~~~~~~~~~~~~~~~~~~d------~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l  173 (315)
                      .  ..-..+.+   +..+++.|+.+      ..+.+||..+.+....-..+.       ....+    ..+.+  +++.+
T Consensus        90 ~~r~~~~~~~~---~~~iyv~GG~~~~~~~~~~~~~~d~~~~~W~~~~~~p~-------~r~~~----~~~~~--~~~iy  153 (306)
T 3ii7_A           90 TPRDSLAACAA---EGKIYTSGGSEVGNSALYLFECYDTRTESWHTKPSMLT-------QRCSH----GMVEA--NGLIY  153 (306)
T ss_dssp             SCCBSCEEEEE---TTEEEEECCBBTTBSCCCCEEEEETTTTEEEEECCCSS-------CCBSC----EEEEE--TTEEE
T ss_pred             ccccceeEEEE---CCEEEEECCCCCCCcEeeeEEEEeCCCCceEeCCCCcC-------Cccee----EEEEE--CCEEE
Confidence            1  11112222   33466666644      468889988765443221111       11111    12222  55666


Q ss_pred             EEecC---------CCcEEEEEcccceeeee--ecCCccceEEEEEcCCCCcEEEEEeCC-----CeEEEEeCCCCeeEE
Q 021247          174 ACGSM---------DGTISVFDVTRAKFLHH--LEGHFMPVRSLVYSPVDPRVLFSASDD-----THVHMYDAEGKSLVT  237 (315)
Q Consensus       174 ~~~s~---------dg~i~i~d~~~~~~~~~--~~~~~~~v~~~~~~~~~~~~l~s~~~d-----~~i~~wd~~~~~~~~  237 (315)
                      +.|+.         -..+.+||+.+.+....  +.........+.+   ++++++.|+.+     ..+.+||+.+.+-..
T Consensus       154 v~GG~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~---~~~i~v~GG~~~~~~~~~~~~yd~~~~~W~~  230 (306)
T 3ii7_A          154 VCGGSLGNNVSGRVLNSCEVYDPATETWTELCPMIEARKNHGLVFV---KDKIFAVGGQNGLGGLDNVEYYDIKLNEWKM  230 (306)
T ss_dssp             EECCEESCTTTCEECCCEEEEETTTTEEEEECCCSSCCBSCEEEEE---TTEEEEECCEETTEEBCCEEEEETTTTEEEE
T ss_pred             EECCCCCCCCcccccceEEEeCCCCCeEEECCCccchhhcceEEEE---CCEEEEEeCCCCCCCCceEEEeeCCCCcEEE
Confidence            66653         34588999987765432  1111111122222   45677777653     358889987654222


Q ss_pred             E--eecccccEEEEEEcCCCCeEEEEeCC-----CcEEEEecCcc
Q 021247          238 A--MSGHASWVLSVDASPDGAAITTGSSD-----RTVKLWDLNMR  275 (315)
Q Consensus       238 ~--~~~~~~~i~~~~~~~~~~~l~s~~~d-----~~i~iwd~~~~  275 (315)
                      .  +.........+.+  ++++++.|+.+     ..+.+||..+.
T Consensus       231 ~~~~p~~r~~~~~~~~--~~~i~v~GG~~~~~~~~~~~~yd~~~~  273 (306)
T 3ii7_A          231 VSPMPWKGVTVKCAAV--GSIVYVLAGFQGVGRLGHILEYNTETD  273 (306)
T ss_dssp             CCCCSCCBSCCEEEEE--TTEEEEEECBCSSSBCCEEEEEETTTT
T ss_pred             CCCCCCCccceeEEEE--CCEEEEEeCcCCCeeeeeEEEEcCCCC
Confidence            1  1111111122222  56777888754     45788888653

>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}

Probab=97.75  E-value=0.0047  Score=50.07  Aligned_cols=209  Identities=16%  Similarity=0.129  Sum_probs=101.7

Q ss_pred             CeEEEEECCCCceeEEeeCCcc---cEEEEEECCCCCeEEEEecCC-----CeEEEEecCCcc---eeeeecCCCCCCCC
Q 021247           82 SFVRVFDVDTNASIATLEASPS---EVWQMQFDPKGTTLAVAGGGS-----ASVKLWDTATWN---LIATLSIPRPEGLK  150 (315)
Q Consensus        82 ~~i~~w~~~~~~~~~~~~~~~~---~v~~~~~~~~~~~~~~~~~~d-----~~i~~~d~~~~~---~~~~~~~~~~~~~~  150 (315)
                      ..+..+|+.+.+-.. +...+.   ....+..  + ..+++.|+.+     ..+.+||..+.+   ....-..+.     
T Consensus        31 ~~~~~~d~~~~~W~~-~~~~p~~r~~~~~~~~--~-~~l~v~GG~~~~~~~~~~~~~d~~~~~~~~W~~~~~~p~-----  101 (301)
T 2vpj_A           31 DVVEKYDPKTQEWSF-LPSITRKRRYVASVSL--H-DRIYVIGGYDGRSRLSSVECLDYTADEDGVWYSVAPMNV-----  101 (301)
T ss_dssp             CCEEEEETTTTEEEE-CCCCSSCCBSCEEEEE--T-TEEEEECCBCSSCBCCCEEEEETTCCTTCCCEEECCCSS-----
T ss_pred             eEEEEEcCCCCeEEe-CCCCChhhccccEEEE--C-CEEEEEcCCCCCccCceEEEEECCCCCCCeeEECCCCCC-----
Confidence            357888887765322 111111   1112222  2 3456666643     468889987755   332211111     


Q ss_pred             CCccCCCCcceEEEEECCCCCEEEEecCC-----CcEEEEEcccceeeee--ecCCccceEEEEEcCCCCcEEEEEeCC-
Q 021247          151 PTDKSSSKKFVLSVAWSPDGRRIACGSMD-----GTISVFDVTRAKFLHH--LEGHFMPVRSLVYSPVDPRVLFSASDD-  222 (315)
Q Consensus       151 ~~~~~~~~~~i~~~~~~~~~~~l~~~s~d-----g~i~i~d~~~~~~~~~--~~~~~~~v~~~~~~~~~~~~l~s~~~d-  222 (315)
                        ....    ...+.+  +++.++.|+.+     ..+.+||+.+.+....  +.........+.+   ++++++.|+.+ 
T Consensus       102 --~r~~----~~~~~~--~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~---~~~iyv~GG~~~  170 (301)
T 2vpj_A          102 --RRGL----AGATTL--GDMIYVSGGFDGSRRHTSMERYDPNIDQWSMLGDMQTAREGAGLVVA---SGVIYCLGGYDG  170 (301)
T ss_dssp             --CCBS----CEEEEE--TTEEEEECCBCSSCBCCEEEEEETTTTEEEEEEECSSCCBSCEEEEE---TTEEEEECCBCS
T ss_pred             --Cccc----eeEEEE--CCEEEEEcccCCCcccceEEEEcCCCCeEEECCCCCCCcccceEEEE---CCEEEEECCCCC
Confidence              1111    112222  56666777643     3588999887765432  2111111122222   45677777654 


Q ss_pred             ----CeEEEEeCCCCeeEEE--eecccccEEEEEEcCCCCeEEEEeCC-----CcEEEEecCccc--eehcccccccceE
Q 021247          223 ----THVHMYDAEGKSLVTA--MSGHASWVLSVDASPDGAAITTGSSD-----RTVKLWDLNMRA--AMQSMTNHTDQVW  289 (315)
Q Consensus       223 ----~~i~~wd~~~~~~~~~--~~~~~~~i~~~~~~~~~~~l~s~~~d-----~~i~iwd~~~~~--~~~~~~~~~~~v~  289 (315)
                          ..+.+||..+.+-...  +.........+.+  ++++++.|+.+     ..+.+||+.+.+  .+..+........
T Consensus       171 ~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~  248 (301)
T 2vpj_A          171 LNILNSVEKYDPHTGHWTNVTPMATKRSGAGVALL--NDHIYVVGGFDGTAHLSSVEAYNIRTDSWTTVTSMTTPRCYVG  248 (301)
T ss_dssp             SCBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEE--TTEEEEECCBCSSSBCCCEEEEETTTTEEEEECCCSSCCBSCE
T ss_pred             CcccceEEEEeCCCCcEEeCCCCCcccccceEEEE--CCEEEEEeCCCCCcccceEEEEeCCCCcEEECCCCCCccccee
Confidence                4588899876643221  1111111112222  56777777764     468899987543  2322222111222


Q ss_pred             EEEEeeCCCEEEEEeCCC-----cEEEeec
Q 021247          290 GVSFRPLGGRVVSVSDDK-----SISLYEY  314 (315)
Q Consensus       290 ~~~~s~~~~~l~s~~~d~-----~i~i~~~  314 (315)
                      .+.  .+++.++.||.++     .+.+||.
T Consensus       249 ~~~--~~~~i~v~GG~~~~~~~~~v~~yd~  276 (301)
T 2vpj_A          249 ATV--LRGRLYAIAGYDGNSLLSSIECYDP  276 (301)
T ss_dssp             EEE--ETTEEEEECCBCSSSBEEEEEEEET
T ss_pred             EEE--ECCEEEEEcCcCCCcccccEEEEcC
Confidence            222  2566667777653     4566664

>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}

Probab=97.69  E-value=0.016  Score=47.75  Aligned_cols=226  Identities=9%  Similarity=0.013  Sum_probs=118.9

Q ss_pred             cceEEEEeCCCCCEEEEeeCCCeEEEEECCCCceeEEeeC----CcccEEEEEECCCCCeEEEEecCCCeEEEEecCCcc
Q 021247           61 LGVVSVAAHPSGIIAASASLDSFVRVFDVDTNASIATLEA----SPSEVWQMQFDPKGTTLAVAGGGSASVKLWDTATWN  136 (315)
Q Consensus        61 ~~v~~~~~~~~g~~l~s~~~d~~i~~w~~~~~~~~~~~~~----~~~~v~~~~~~~~~~~~~~~~~~d~~i~~~d~~~~~  136 (315)
                      ..+.++.+.+.+..++ ++.++.|. ...+.++.-.....    ....+..+.++| + .+++. +..+.|..- ...++
T Consensus        36 ~~~~~v~~~~~~~~~~-~G~~g~i~-~s~DgG~tW~~~~~~~~~~~~~~~~i~~~~-~-~~~~~-g~~g~i~~S-~DgG~  109 (327)
T 2xbg_A           36 ATILDMSFIDRHHGWL-VGVNATLM-ETRDGGQTWEPRTLVLDHSDYRFNSVSFQG-N-EGWIV-GEPPIMLHT-TDGGQ  109 (327)
T ss_dssp             SCEEEEEESSSSCEEE-EETTTEEE-EESSTTSSCEECCCCCSCCCCEEEEEEEET-T-EEEEE-EETTEEEEE-SSTTS
T ss_pred             CcEEEEEECCCCcEEE-EcCCCeEE-EeCCCCCCCeECCCCCCCCCccEEEEEecC-C-eEEEE-ECCCeEEEE-CCCCC
Confidence            4688999987777777 45677653 33344433222211    233678888876 3 34444 345544432 11121


Q ss_pred             eeeeecCCCCCCCCCCccCCCCcceEEEEECCCCCEEEEecCCCcEE-EEEcccceeee-eecCCccceEEEEEcCCCCc
Q 021247          137 LIATLSIPRPEGLKPTDKSSSKKFVLSVAWSPDGRRIACGSMDGTIS-VFDVTRAKFLH-HLEGHFMPVRSLVYSPVDPR  214 (315)
Q Consensus       137 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~s~dg~i~-i~d~~~~~~~~-~~~~~~~~v~~~~~~~~~~~  214 (315)
                      .-.....+.          .....+..+.+.+++..++++. ++.|+ -.|  .++... ........+..+.+.| ++.
T Consensus       110 tW~~~~~~~----------~~~~~~~~i~~~~~~~~~~~~~-~g~v~~S~D--gG~tW~~~~~~~~~~~~~~~~~~-~~~  175 (327)
T 2xbg_A          110 SWSQIPLDP----------KLPGSPRLIKALGNGSAEMITN-VGAIYRTKD--SGKNWQALVQEAIGVMRNLNRSP-SGE  175 (327)
T ss_dssp             SCEECCCCT----------TCSSCEEEEEEEETTEEEEEET-TCCEEEESS--TTSSEEEEECSCCCCEEEEEECT-TSC
T ss_pred             CceECcccc----------CCCCCeEEEEEECCCCEEEEeC-CccEEEEcC--CCCCCEEeecCCCcceEEEEEcC-CCc
Confidence            111111100          0011245677666666666554 55443 223  232222 2233445678889987 455


Q ss_pred             EEEEEeCCCeEEEEeC--CCCeeEEEeecccccEEEEEEcCCCCeEEEEeCCCcEEEEecCccceehcccc----cccce
Q 021247          215 VLFSASDDTHVHMYDA--EGKSLVTAMSGHASWVLSVDASPDGAAITTGSSDRTVKLWDLNMRAAMQSMTN----HTDQV  288 (315)
Q Consensus       215 ~l~s~~~d~~i~~wd~--~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~----~~~~v  288 (315)
                      +++.+...+..+..|.  +.-+.+  -......+..+.++++++++ .++.+|.+++.+.+.++.+..+..    +...+
T Consensus       176 ~~~~g~~G~~~~S~d~gG~tW~~~--~~~~~~~~~~~~~~~~g~~~-~~~~~G~~~~s~~D~G~tW~~~~~~~~~~~~~~  252 (327)
T 2xbg_A          176 YVAVSSRGSFYSTWEPGQTAWEPH--NRTTSRRLHNMGFTPDGRLW-MIVNGGKIAFSDPDNSENWGELLSPLRRNSVGF  252 (327)
T ss_dssp             EEEEETTSSEEEEECTTCSSCEEE--ECCSSSCEEEEEECTTSCEE-EEETTTEEEEEETTEEEEECCCBCTTSSCCSCE
T ss_pred             EEEEECCCcEEEEeCCCCCceeEC--CCCCCCccceeEECCCCCEE-EEeCCceEEEecCCCCCeeEeccCCcccCCcce
Confidence            6655544444444553  222222  22345668889999988755 455678887775443444443321    22358


Q ss_pred             EEEEEeeCCCEEEEEeCCCcEE
Q 021247          289 WGVSFRPLGGRVVSVSDDKSIS  310 (315)
Q Consensus       289 ~~~~~s~~~~~l~s~~~d~~i~  310 (315)
                      .++++.+++..++ ++.++.|.
T Consensus       253 ~~v~~~~~~~~~~-~g~~g~i~  273 (327)
T 2xbg_A          253 LDLAYRTPNEVWL-AGGAGALL  273 (327)
T ss_dssp             EEEEESSSSCEEE-EESTTCEE
T ss_pred             EEEEecCCCEEEE-EeCCCeEE
Confidence            8999998776555 44566663

>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}

Probab=97.64  E-value=0.0092  Score=48.34  Aligned_cols=222  Identities=14%  Similarity=0.160  Sum_probs=108.9

Q ss_pred             cEEEEeeCC----CcEEEEcCCCCcceee--ccccccceEEEEeCCCCCEEEEeeCC-----CeEEEEECCCCceeEEee
Q 021247           31 ALLLTGSLD----ETVKLWRPDDMQLERT--NTGHCLGVVSVAAHPSGIIAASASLD-----SFVRVFDVDTNASIATLE   99 (315)
Q Consensus        31 ~~l~sgs~d----~~v~~w~~~~~~~~~~--~~~h~~~v~~~~~~~~g~~l~s~~~d-----~~i~~w~~~~~~~~~~~~   99 (315)
                      .+++.|+.+    ..+..||+.+.+-...  .+.....-..+..  ++.+++.|+.+     ..+.++|..+.+-...-.
T Consensus        17 ~i~v~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~   94 (302)
T 2xn4_A           17 LMVVVGGQAPKAIRSVECYDFKEERWHQVAELPSRRCRAGMVYM--AGLVFAVGGFNGSLRVRTVDSYDPVKDQWTSVAN   94 (302)
T ss_dssp             EEEEECCBSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEE--TTEEEEESCBCSSSBCCCEEEEETTTTEEEEECC
T ss_pred             EEEEECCCCCCCCCcEEEEcCcCCcEeEcccCCcccccceEEEE--CCEEEEEeCcCCCccccceEEECCCCCceeeCCC
Confidence            366667654    3578888766542221  1111111111222  56777777755     358888887765332211


Q ss_pred             CCc--ccEEEEEECCCCCeEEEEecCC-----CeEEEEecCCcceeeeecCCCCCCCCCCccCCCCcceEEEEECCCCCE
Q 021247          100 ASP--SEVWQMQFDPKGTTLAVAGGGS-----ASVKLWDTATWNLIATLSIPRPEGLKPTDKSSSKKFVLSVAWSPDGRR  172 (315)
Q Consensus       100 ~~~--~~v~~~~~~~~~~~~~~~~~~d-----~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~  172 (315)
                      ...  ..-..+.+  + ..+++.|+.+     ..+.+||..+.+....-..+.       ....    ...+.+  +++.
T Consensus        95 ~p~~r~~~~~~~~--~-~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~-------~r~~----~~~~~~--~~~i  158 (302)
T 2xn4_A           95 MRDRRSTLGAAVL--N-GLLYAVGGFDGSTGLSSVEAYNIKSNEWFHVAPMNT-------RRSS----VGVGVV--GGLL  158 (302)
T ss_dssp             CSSCCBSCEEEEE--T-TEEEEEEEECSSCEEEEEEEEETTTTEEEEECCCSS-------CCBS----CEEEEE--TTEE
T ss_pred             CCccccceEEEEE--C-CEEEEEcCCCCCccCceEEEEeCCCCeEeecCCCCC-------cccC----ceEEEE--CCEE
Confidence            111  11112222  3 3455555543     357788887655443221111       1111    112222  5566


Q ss_pred             EEEecCC-------CcEEEEEcccceeeee--ecCCccceEEEEEcCCCCcEEEEEeCC-----CeEEEEeCCCCeeEEE
Q 021247          173 IACGSMD-------GTISVFDVTRAKFLHH--LEGHFMPVRSLVYSPVDPRVLFSASDD-----THVHMYDAEGKSLVTA  238 (315)
Q Consensus       173 l~~~s~d-------g~i~i~d~~~~~~~~~--~~~~~~~v~~~~~~~~~~~~l~s~~~d-----~~i~~wd~~~~~~~~~  238 (315)
                      ++.|+.+       ..+..||+.+.+....  +.........+.+   ++++++.|+.+     ..+.+||.++.+-...
T Consensus       159 yv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~---~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~  235 (302)
T 2xn4_A          159 YAVGGYDVASRQCLSTVECYNATTNEWTYIAEMSTRRSGAGVGVL---NNLLYAVGGHDGPLVRKSVEVYDPTTNAWRQV  235 (302)
T ss_dssp             EEECCEETTTTEECCCEEEEETTTTEEEEECCCSSCCBSCEEEEE---TTEEEEECCBSSSSBCCCEEEEETTTTEEEEE
T ss_pred             EEEeCCCCCCCccccEEEEEeCCCCcEEECCCCccccccccEEEE---CCEEEEECCCCCCcccceEEEEeCCCCCEeeC
Confidence            6666542       3588999987765432  2111111122222   46777777754     3688999876543221


Q ss_pred             --eecccccEEEEEEcCCCCeEEEEeCCC-----cEEEEecCcc
Q 021247          239 --MSGHASWVLSVDASPDGAAITTGSSDR-----TVKLWDLNMR  275 (315)
Q Consensus       239 --~~~~~~~i~~~~~~~~~~~l~s~~~d~-----~i~iwd~~~~  275 (315)
                        +.........+.  .++++++.|+.++     .|.+||..+.
T Consensus       236 ~~~~~~r~~~~~~~--~~~~i~v~GG~~~~~~~~~v~~yd~~~~  277 (302)
T 2xn4_A          236 ADMNMCRRNAGVCA--VNGLLYVVGGDDGSCNLASVEYYNPTTD  277 (302)
T ss_dssp             CCCSSCCBSCEEEE--ETTEEEEECCBCSSSBCCCEEEEETTTT
T ss_pred             CCCCCccccCeEEE--ECCEEEEECCcCCCcccccEEEEcCCCC
Confidence              111001111122  2567777777654     4788888754

>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}

Probab=97.57  E-value=0.021  Score=46.59  Aligned_cols=220  Identities=13%  Similarity=0.128  Sum_probs=107.1

Q ss_pred             EEEEeeCCCcEEEEcCCCCccee-eccccccceEEEEeCCCCCEEEEeeC----C-------CeEEEEECCCCceeEEee
Q 021247           32 LLLTGSLDETVKLWRPDDMQLER-TNTGHCLGVVSVAAHPSGIIAASASL----D-------SFVRVFDVDTNASIATLE   99 (315)
Q Consensus        32 ~l~sgs~d~~v~~w~~~~~~~~~-~~~~h~~~v~~~~~~~~g~~l~s~~~----d-------~~i~~w~~~~~~~~~~~~   99 (315)
                      +++.|+  ..+..||+.+.+-.. ..+.............++.+++.|+.    +       ..+..+|..+.+-.. +.
T Consensus         7 l~~~GG--~~~~~yd~~~~~W~~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~-~~   83 (315)
T 4asc_A            7 IFMISE--EGAVAYDPAANECYCASLSSQVPKNHVSLVTKENQVFVAGGLFYNEDNKEDPMSAYFLQFDHLDSEWLG-MP   83 (315)
T ss_dssp             EEEEET--TEEEEEETTTTEEEEEECCCCSCSSEEEEECTTCCEEEEEEEEECSSCSSSCEEEEEEEEETTTTEEEE-CC
T ss_pred             EEEEcC--CceEEECCCCCeEecCCCCCCCCccceEEEEECCEEEEEcCcccCCCCCccccccceEEecCCCCeEEE-CC
Confidence            455566  578889987655221 11111111122233356777777773    1       127778887765322 21


Q ss_pred             CCcccE---EEEEECCCCCeEEEEecCC--------CeEEEEecCCcceeeeecCCCCCCCCCCccCCCCcceEEEEECC
Q 021247          100 ASPSEV---WQMQFDPKGTTLAVAGGGS--------ASVKLWDTATWNLIATLSIPRPEGLKPTDKSSSKKFVLSVAWSP  168 (315)
Q Consensus       100 ~~~~~v---~~~~~~~~~~~~~~~~~~d--------~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~  168 (315)
                      ..+.+-   ..+.+   +..+++.|+.+        ..+.+||..+.+....-..+.       ....+     +++. .
T Consensus        84 ~~p~~r~~~~~~~~---~~~lyv~GG~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~-------~r~~~-----~~~~-~  147 (315)
T 4asc_A           84 PLPSPRCLFGLGEA---LNSIYVVGGREIKDGERCLDSVMCYDRLSFKWGESDPLPY-------VVYGH-----TVLS-H  147 (315)
T ss_dssp             CBSSCEESCEEEEE---TTEEEEECCEESSTTCCBCCCEEEEETTTTEEEECCCCSS-------CCBSC-----EEEE-E
T ss_pred             CCCcchhceeEEEE---CCEEEEEeCCcCCCCCcccceEEEECCCCCcEeECCCCCC-------cccce-----eEEE-E
Confidence            111111   11222   34465666532        458889988755432211111       11111     2222 3


Q ss_pred             CCCEEEEecC-C-----CcEEEEEcccceeeee--ecCCccceEEEEEcCCCCcEEEEEeCCC-----eEEEEeCCCCee
Q 021247          169 DGRRIACGSM-D-----GTISVFDVTRAKFLHH--LEGHFMPVRSLVYSPVDPRVLFSASDDT-----HVHMYDAEGKSL  235 (315)
Q Consensus       169 ~~~~l~~~s~-d-----g~i~i~d~~~~~~~~~--~~~~~~~v~~~~~~~~~~~~l~s~~~d~-----~i~~wd~~~~~~  235 (315)
                      +++.++.|+. +     ..+.+||+.+.+....  +.........+.+   ++++++.|+.++     .+.+||.++.+-
T Consensus       148 ~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~---~~~iyv~GG~~~~~~~~~~~~yd~~~~~W  224 (315)
T 4asc_A          148 MDLVYVIGGKGSDRKCLNKMCVYDPKKFEWKELAPMQTARSLFGATVH---DGRIIVAAGVTDTGLTSSAEVYSITDNKW  224 (315)
T ss_dssp             TTEEEEECCBCTTSCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEE---TTEEEEEEEECSSSEEEEEEEEETTTTEE
T ss_pred             CCEEEEEeCCCCCCcccceEEEEeCCCCeEEECCCCCCchhceEEEEE---CCEEEEEeccCCCCccceEEEEECCCCeE
Confidence            4566677765 2     3689999987765432  1111111122222   456777777543     588899877643


Q ss_pred             EEE--eecccccEEEEEEcCCCCeEEEEeCCC--------------cEEEEecCcc
Q 021247          236 VTA--MSGHASWVLSVDASPDGAAITTGSSDR--------------TVKLWDLNMR  275 (315)
Q Consensus       236 ~~~--~~~~~~~i~~~~~~~~~~~l~s~~~d~--------------~i~iwd~~~~  275 (315)
                      ...  +.........+.+  ++++++.|+.++              .|.+||+.+.
T Consensus       225 ~~~~~~p~~r~~~~~~~~--~~~l~v~GG~~~~~~~~~~~~~~~~~~v~~yd~~~~  278 (315)
T 4asc_A          225 APFEAFPQERSSLSLVSL--VGTLYAIGGFATLETESGELVPTELNDIWRYNEEEK  278 (315)
T ss_dssp             EEECCCSSCCBSCEEEEE--TTEEEEEEEEEEEECTTSCEEEEEEEEEEEEETTTT
T ss_pred             EECCCCCCcccceeEEEE--CCEEEEECCccccCcCCccccccccCcEEEecCCCC
Confidence            221  1111111111222  567777777642              3667777653

>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}

Probab=97.53  E-value=0.012  Score=47.72  Aligned_cols=218  Identities=17%  Similarity=0.196  Sum_probs=104.5

Q ss_pred             CEEEEeeCC----CeEEEEECCCCceeEEeeCCccc---EEEEEECCCCCeEEEEecCC-----CeEEEEecCCcceeee
Q 021247           73 IIAASASLD----SFVRVFDVDTNASIATLEASPSE---VWQMQFDPKGTTLAVAGGGS-----ASVKLWDTATWNLIAT  140 (315)
Q Consensus        73 ~~l~s~~~d----~~i~~w~~~~~~~~~~~~~~~~~---v~~~~~~~~~~~~~~~~~~d-----~~i~~~d~~~~~~~~~  140 (315)
                      .+++.|+.+    ..+..+|+.+..-.. +...+.+   -..+.+   +..+++.|+.+     ..+.+||..+.+....
T Consensus        17 ~i~v~GG~~~~~~~~~~~~d~~~~~W~~-~~~~p~~r~~~~~~~~---~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~   92 (302)
T 2xn4_A           17 LMVVVGGQAPKAIRSVECYDFKEERWHQ-VAELPSRRCRAGMVYM---AGLVFAVGGFNGSLRVRTVDSYDPVKDQWTSV   92 (302)
T ss_dssp             EEEEECCBSSSBCCCEEEEETTTTEEEE-ECCCSSCCBSCEEEEE---TTEEEEESCBCSSSBCCCEEEEETTTTEEEEE
T ss_pred             EEEEECCCCCCCCCcEEEEcCcCCcEeE-cccCCcccccceEEEE---CCEEEEEeCcCCCccccceEEECCCCCceeeC
Confidence            344444432    347778877664322 2111111   111222   34466666643     4588899877654432


Q ss_pred             ecCCCCCCCCCCccCCCCcceEEEEECCCCCEEEEecCCC-----cEEEEEcccceeeee--ecCCccceEEEEEcCCCC
Q 021247          141 LSIPRPEGLKPTDKSSSKKFVLSVAWSPDGRRIACGSMDG-----TISVFDVTRAKFLHH--LEGHFMPVRSLVYSPVDP  213 (315)
Q Consensus       141 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~s~dg-----~i~i~d~~~~~~~~~--~~~~~~~v~~~~~~~~~~  213 (315)
                      -..+.+       ...    ...+.+  +++.++.|+.++     .+.+||+.+.+....  +.........+.+   ++
T Consensus        93 ~~~p~~-------r~~----~~~~~~--~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~---~~  156 (302)
T 2xn4_A           93 ANMRDR-------RST----LGAAVL--NGLLYAVGGFDGSTGLSSVEAYNIKSNEWFHVAPMNTRRSSVGVGVV---GG  156 (302)
T ss_dssp             CCCSSC-------CBS----CEEEEE--TTEEEEEEEECSSCEEEEEEEEETTTTEEEEECCCSSCCBSCEEEEE---TT
T ss_pred             CCCCcc-------ccc----eEEEEE--CCEEEEEcCCCCCccCceEEEEeCCCCeEeecCCCCCcccCceEEEE---CC
Confidence            221111       111    112222  566667776543     578899887765432  1111111112222   45


Q ss_pred             cEEEEEeCC-------CeEEEEeCCCCeeEEE--eecccccEEEEEEcCCCCeEEEEeCC-----CcEEEEecCccc--e
Q 021247          214 RVLFSASDD-------THVHMYDAEGKSLVTA--MSGHASWVLSVDASPDGAAITTGSSD-----RTVKLWDLNMRA--A  277 (315)
Q Consensus       214 ~~l~s~~~d-------~~i~~wd~~~~~~~~~--~~~~~~~i~~~~~~~~~~~l~s~~~d-----~~i~iwd~~~~~--~  277 (315)
                      ++++.|+.+       ..+.+||..+.+-...  +.........+.+  ++++++.|+.+     ..+.+||..+.+  .
T Consensus       157 ~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~  234 (302)
T 2xn4_A          157 LLYAVGGYDVASRQCLSTVECYNATTNEWTYIAEMSTRRSGAGVGVL--NNLLYAVGGHDGPLVRKSVEVYDPTTNAWRQ  234 (302)
T ss_dssp             EEEEECCEETTTTEECCCEEEEETTTTEEEEECCCSSCCBSCEEEEE--TTEEEEECCBSSSSBCCCEEEEETTTTEEEE
T ss_pred             EEEEEeCCCCCCCccccEEEEEeCCCCcEEECCCCccccccccEEEE--CCEEEEECCCCCCcccceEEEEeCCCCCEee
Confidence            667766642       3488899876543221  1111111111222  56777777765     368889987542  2


Q ss_pred             ehcccccccceEEEEEeeCCCEEEEEeCCC-----cEEEeec
Q 021247          278 MQSMTNHTDQVWGVSFRPLGGRVVSVSDDK-----SISLYEY  314 (315)
Q Consensus       278 ~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~-----~i~i~~~  314 (315)
                      +..+.........+.  .+++.++.||.++     .+.+||.
T Consensus       235 ~~~~~~~r~~~~~~~--~~~~i~v~GG~~~~~~~~~v~~yd~  274 (302)
T 2xn4_A          235 VADMNMCRRNAGVCA--VNGLLYVVGGDDGSCNLASVEYYNP  274 (302)
T ss_dssp             ECCCSSCCBSCEEEE--ETTEEEEECCBCSSSBCCCEEEEET
T ss_pred             CCCCCCccccCeEEE--ECCEEEEECCcCCCcccccEEEEcC
Confidence            332222111111222  3566667777654     4777765

>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}

Probab=97.53  E-value=0.022  Score=46.20  Aligned_cols=219  Identities=11%  Similarity=0.104  Sum_probs=108.3

Q ss_pred             CCEEEEeeC--CCeEEEEECCCCceeEEeeCCc---ccEEEEEECCCCCeEEEEecCC----CeEEEEecCCcceeeeec
Q 021247           72 GIIAASASL--DSFVRVFDVDTNASIATLEASP---SEVWQMQFDPKGTTLAVAGGGS----ASVKLWDTATWNLIATLS  142 (315)
Q Consensus        72 g~~l~s~~~--d~~i~~w~~~~~~~~~~~~~~~---~~v~~~~~~~~~~~~~~~~~~d----~~i~~~d~~~~~~~~~~~  142 (315)
                      +.+++.|+.  ...+..+|..+++-... ...+   ..-..+.+   +..+++.|+.+    ..+.+||..+.+....-.
T Consensus        12 ~~l~~~GG~~~~~~~~~~d~~~~~W~~~-~~~p~~r~~~~~~~~---~~~lyv~GG~~~~~~~~~~~~d~~~~~W~~~~~   87 (306)
T 3ii7_A           12 DYRIALFGGSQPQSCRYFNPKDYSWTDI-RCPFEKRRDAACVFW---DNVVYILGGSQLFPIKRMDCYNVVKDSWYSKLG   87 (306)
T ss_dssp             CEEEEEECCSSTTSEEEEETTTTEEEEC-CCCSCCCBSCEEEEE---TTEEEEECCBSSSBCCEEEEEETTTTEEEEEEC
T ss_pred             ceEEEEeCCCCCceEEEecCCCCCEecC-CCCCcccceeEEEEE---CCEEEEEeCCCCCCcceEEEEeCCCCeEEECCC
Confidence            345555554  35688889887653321 1111   11112222   33466666644    678889988765543322


Q ss_pred             CCCCCCCCCCccCCCCcceEEEEECCCCCEEEEecCC------CcEEEEEcccceeeee--ecCCccceEEEEEcCCCCc
Q 021247          143 IPRPEGLKPTDKSSSKKFVLSVAWSPDGRRIACGSMD------GTISVFDVTRAKFLHH--LEGHFMPVRSLVYSPVDPR  214 (315)
Q Consensus       143 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~s~d------g~i~i~d~~~~~~~~~--~~~~~~~v~~~~~~~~~~~  214 (315)
                      .+.+       ...    ...+.+  +++.++.|+.+      ..+.+||+.+.+....  +.........+.+   +++
T Consensus        88 ~p~~-------r~~----~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~---~~~  151 (306)
T 3ii7_A           88 PPTP-------RDS----LAACAA--EGKIYTSGGSEVGNSALYLFECYDTRTESWHTKPSMLTQRCSHGMVEA---NGL  151 (306)
T ss_dssp             CSSC-------CBS----CEEEEE--TTEEEEECCBBTTBSCCCCEEEEETTTTEEEEECCCSSCCBSCEEEEE---TTE
T ss_pred             CCcc-------ccc----eeEEEE--CCEEEEECCCCCCCcEeeeEEEEeCCCCceEeCCCCcCCcceeEEEEE---CCE
Confidence            2111       111    112222  56666777654      4589999987765432  1111111122222   456


Q ss_pred             EEEEEeC---------CCeEEEEeCCCCeeEEE--eecccccEEEEEEcCCCCeEEEEeCC-----CcEEEEecCccc--
Q 021247          215 VLFSASD---------DTHVHMYDAEGKSLVTA--MSGHASWVLSVDASPDGAAITTGSSD-----RTVKLWDLNMRA--  276 (315)
Q Consensus       215 ~l~s~~~---------d~~i~~wd~~~~~~~~~--~~~~~~~i~~~~~~~~~~~l~s~~~d-----~~i~iwd~~~~~--  276 (315)
                      +++.|+.         -..+.+||..+.+-...  +......-..+.+  ++++++.|+.+     ..+.+||+.+.+  
T Consensus       152 iyv~GG~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~i~v~GG~~~~~~~~~~~~yd~~~~~W~  229 (306)
T 3ii7_A          152 IYVCGGSLGNNVSGRVLNSCEVYDPATETWTELCPMIEARKNHGLVFV--KDKIFAVGGQNGLGGLDNVEYYDIKLNEWK  229 (306)
T ss_dssp             EEEECCEESCTTTCEECCCEEEEETTTTEEEEECCCSSCCBSCEEEEE--TTEEEEECCEETTEEBCCEEEEETTTTEEE
T ss_pred             EEEECCCCCCCCcccccceEEEeCCCCCeEEECCCccchhhcceEEEE--CCEEEEEeCCCCCCCCceEEEeeCCCCcEE
Confidence            6676653         34588999877643221  1111111111222  56677777654     357888887642  


Q ss_pred             eehcccccccceEEEEEeeCCCEEEEEeCC-----CcEEEeec
Q 021247          277 AMQSMTNHTDQVWGVSFRPLGGRVVSVSDD-----KSISLYEY  314 (315)
Q Consensus       277 ~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d-----~~i~i~~~  314 (315)
                      .+..+.........+.+  ++..++.||.+     ..+.+||.
T Consensus       230 ~~~~~p~~r~~~~~~~~--~~~i~v~GG~~~~~~~~~~~~yd~  270 (306)
T 3ii7_A          230 MVSPMPWKGVTVKCAAV--GSIVYVLAGFQGVGRLGHILEYNT  270 (306)
T ss_dssp             ECCCCSCCBSCCEEEEE--TTEEEEEECBCSSSBCCEEEEEET
T ss_pred             ECCCCCCCccceeEEEE--CCEEEEEeCcCCCeeeeeEEEEcC
Confidence            33333222222223333  56666777754     45666664

>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*

Probab=97.49  E-value=0.033  Score=46.40  Aligned_cols=230  Identities=12%  Similarity=0.076  Sum_probs=123.9

Q ss_pred             ceEEEEeCCCCCEEEEeeCCCeEEEEECCCCc-eeEEee---CCcccEEEEEECCC---CCeEEEEecC---C----CeE
Q 021247           62 GVVSVAAHPSGIIAASASLDSFVRVFDVDTNA-SIATLE---ASPSEVWQMQFDPK---GTTLAVAGGG---S----ASV  127 (315)
Q Consensus        62 ~v~~~~~~~~g~~l~s~~~d~~i~~w~~~~~~-~~~~~~---~~~~~v~~~~~~~~---~~~~~~~~~~---d----~~i  127 (315)
                      ....+.+.|+|.++++ ..++.|++++. ++. .+..+.   ........++++|+   +..++++-..   +    ..|
T Consensus        30 ~P~~ia~~pdG~l~V~-e~~g~I~~~d~-~G~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lyv~~~~~~~~~~~~~~v  107 (354)
T 3a9g_A           30 VPWSIAPLGGGRYLVT-ERPGRLVLISP-SGKKLVASFDVANVGEAGLLGLALHPEFPKKSWVYLYASYFAEGGHIRNRV  107 (354)
T ss_dssp             CEEEEEEEETTEEEEE-ETTTEEEEECS-SCEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEEECGGGCEEEEE
T ss_pred             CCeEEEEcCCCeEEEE-eCCCEEEEEeC-CCceEeeccceeecCCCceeeEEeCCCCCcCCEEEEEEeccCCCCCcceEE
Confidence            4678899999986665 55699999873 443 222211   12345789999997   5556555432   3    456


Q ss_pred             EEEecCCc--ce--eee-ec-CCCCCCCCCCccCCCCcceEEEEECCCCCEEEEecC-------------CCcEEEEEcc
Q 021247          128 KLWDTATW--NL--IAT-LS-IPRPEGLKPTDKSSSKKFVLSVAWSPDGRRIACGSM-------------DGTISVFDVT  188 (315)
Q Consensus       128 ~~~d~~~~--~~--~~~-~~-~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~s~-------------dg~i~i~d~~  188 (315)
                      ..++....  ..  ... +. ++.          ........++|.|+|.+.++.+.             .|.|.-++..
T Consensus       108 ~r~~~~~~~~~~~~~~~l~~~~~~----------~~~h~~~~l~~~pDG~Lyvt~G~~~~~~~~~d~~~~~G~I~ri~~d  177 (354)
T 3a9g_A          108 IRGRLDGSTFKLKEVKTLIDGIPG----------AYIHNGGRIRFGPDGMLYITTGDAADPRLAQDLSSLAGKILRVDEE  177 (354)
T ss_dssp             EEEEECSSSCCEEEEEEEEEEEEC----------CSSCCCCCEEECTTSCEEEECCCTTCGGGGTCTTCCSSEEEEECTT
T ss_pred             EEEEECCCCcCcCccEEEEEcCCC----------CCCcCCceEEECCCCcEEEEECCCCCCccccCCCCCCeEEEEEcCC
Confidence            66765432  11  011 10 110          01112457999999986665332             2456666653


Q ss_pred             cc--------eeeeeecCCccceEEEEEcCCCCcEEEEEeCCC---eEEEEeCCC----------------CeeEEEeec
Q 021247          189 RA--------KFLHHLEGHFMPVRSLVYSPVDPRVLFSASDDT---HVHMYDAEG----------------KSLVTAMSG  241 (315)
Q Consensus       189 ~~--------~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~---~i~~wd~~~----------------~~~~~~~~~  241 (315)
                      ..        ....-..++. ....++|+|.+++++++-....   .|.+...-.                ...+..+..
T Consensus       178 G~~p~~npf~~~~i~a~G~r-np~Gla~d~~~g~l~v~d~g~~~~dei~~i~~G~nyGwp~~~g~~~~~~~~~p~~~~~~  256 (354)
T 3a9g_A          178 GRPPADNPFPNSPIWSYGHR-NPQGIDWHRASGVMVATEHGPVGHDEVNIILKGGNYGWPLATGKAGRGEFVDPVIDTGS  256 (354)
T ss_dssp             SCCCTTSSSTTCCEEEECCS-CCCEEEECTTTCCEEEEECCSSSCCEEEEECTTCBCCTTTCCSCCCCTTSCCCSEECTT
T ss_pred             CCCCCCCCCCCCcEEEEccC-CcceEEEeCCCCCEEEEecCCCCCcEEEEecCCCcCCCCcccCCCCCCCCcCCEeecCC
Confidence            21        0001112332 3457889985566555543322   233332110                011112211


Q ss_pred             ccccEEEEEE-------cCCCCeEEEEeCCCcEEEEecCcc-cee--hcc-cccccceEEEEEeeCCCEEEEEe
Q 021247          242 HASWVLSVDA-------SPDGAAITTGSSDRTVKLWDLNMR-AAM--QSM-TNHTDQVWGVSFRPLGGRVVSVS  304 (315)
Q Consensus       242 ~~~~i~~~~~-------~~~~~~l~s~~~d~~i~iwd~~~~-~~~--~~~-~~~~~~v~~~~~s~~~~~l~s~~  304 (315)
                      ....+..+.+       ..+|.++++.-..+.|...+++.. +..  ..+ .+....+..+++.|||...++..
T Consensus       257 ~~~ap~G~~~y~g~~fp~~~G~l~v~~~~~~~v~~~~~~~~g~~~~~~~~~~~~~~rp~~v~~~pDG~lyv~~~  330 (354)
T 3a9g_A          257 ETWAPSGASFVHGDMFPGLRGWLLIACLRGSMLAAVNFGDNMEVRKISTFFKNVFGRLRDVVIDDDGGILISTS  330 (354)
T ss_dssp             CCCCEEEEEECCSSSCGGGTTEEEEEETTTTEEEEEEECGGGCEEEEEEECTTTSCCEEEEEECTTSCEEEEEC
T ss_pred             CCcCCcceEEECCCCCcccCCcEEEEEcCCCEEEEEEECCCCcccceeeeccCCCCCeeEEEECCCCcEEEEEe
Confidence            1234677888       356777777777778888888753 221  122 22235788999999997666654

>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*

Probab=97.45  E-value=0.037  Score=45.96  Aligned_cols=187  Identities=13%  Similarity=0.148  Sum_probs=108.6

Q ss_pred             ceEEEEeCCCCCEEEEe------------eCCCeEEEEECCCC-ceeEE--eeC-----CcccEEEEEECC--CCC-eEE
Q 021247           62 GVVSVAAHPSGIIAASA------------SLDSFVRVFDVDTN-ASIAT--LEA-----SPSEVWQMQFDP--KGT-TLA  118 (315)
Q Consensus        62 ~v~~~~~~~~g~~l~s~------------~~d~~i~~w~~~~~-~~~~~--~~~-----~~~~v~~~~~~~--~~~-~~~  118 (315)
                      +.-.+...|+|..++++            ..+|.|.++|+++. .....  +..     ..-....+.+.+  ++. +++
T Consensus        51 G~EDi~~~~~G~~~~s~~~~~pg~~~~~~~~~G~I~~~d~~~~~~~~~~l~~~g~~~~~~~f~PhGi~~~~d~dg~~~L~  130 (355)
T 3sre_A           51 GSEDLEILPNGLAFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPAVSELEIIGNTLDISSFNPHGISTFIDDDNTVYLL  130 (355)
T ss_dssp             CCCEEEECTTSEEEEEECCC-----------CCEEEEEETTSSSCCEEECEEECSSCCGGGCCEEEEEEEECTTCCEEEE
T ss_pred             CcceeEEcCCCeEEEEeccccCCCcccCCCCCCeEEEEecCCCCCceEEEEccCCCCCcCceeeeeeEEEECCCCcEEEE
Confidence            44566678888776665            27899999998742 11222  222     112455666644  343 455


Q ss_pred             EEecC--CCeEEEEecCCcce----eeeecCCCCCCCCCCccCCCCcceEEEEECCCCCEEEEec---------------
Q 021247          119 VAGGG--SASVKLWDTATWNL----IATLSIPRPEGLKPTDKSSSKKFVLSVAWSPDGRRIACGS---------------  177 (315)
Q Consensus       119 ~~~~~--d~~i~~~d~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~s---------------  177 (315)
                      ++...  +.++.+|++.....    +..+..  .          .-...+.+++.++|...++..               
T Consensus       131 Vvnh~~~~s~ielf~~d~~~~~~~~~~~~~g--~----------~~~~pND~~v~~~G~fyvt~~~~ftd~~~~~~e~~~  198 (355)
T 3sre_A          131 VVNHPGSSSTVEVFKFQEEEKSLLHLKTIRH--K----------LLPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHL  198 (355)
T ss_dssp             EEECSTTCCEEEEEEEETTTTEEEEEEEECC--T----------TCSSEEEEEEEETTEEEEEESCSCSSHHHHHHHHHT
T ss_pred             EEECCCCCCeEEEEEEECCCCEEEEEecccc--C----------CCCCCceEEEeCCCCEEecCCcEeCCcccccchhhc
Confidence            55443  56788877654321    111211  0          112367889999988766643               


Q ss_pred             --CCCcEEEEEcccceeeeeecCCccceEEEEEcCCCCcEEEEEeCCCeEEEEeCCC-Cee--EEEeecccccEEEEEEc
Q 021247          178 --MDGTISVFDVTRAKFLHHLEGHFMPVRSLVYSPVDPRVLFSASDDTHVHMYDAEG-KSL--VTAMSGHASWVLSVDAS  252 (315)
Q Consensus       178 --~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~-~~~--~~~~~~~~~~i~~~~~~  252 (315)
                        ..|.++.+|..  + ...+.......+.++|+|++..++++-+..+.|..|+... +++  ...+ ...+..-.++++
T Consensus       199 ~~~~g~vyr~d~~--~-~~~~~~~l~~pNGia~spDg~~lYvadt~~~~I~~~~~~~~g~l~~~~~~-~~~g~PDGi~vD  274 (355)
T 3sre_A          199 GLAWSFVTYYSPN--D-VRVVAEGFDFANGINISPDGKYVYIAELLAHKIHVYEKHANWTLTPLRVL-SFDTLVDNISVD  274 (355)
T ss_dssp             TCCCEEEEEECTT--C-CEEEEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEE-ECSSEEEEEEEC
T ss_pred             cCCccEEEEEECC--e-EEEeecCCcccCcceECCCCCEEEEEeCCCCeEEEEEECCCCcEecCEEE-eCCCCCceEEEe
Confidence              13556666653  2 2222222345689999996666777777889999999763 322  1222 224556788999


Q ss_pred             C-CCCeEEEEeCC
Q 021247          253 P-DGAAITTGSSD  264 (315)
Q Consensus       253 ~-~~~~l~s~~~d  264 (315)
                      + +|.+.+++..+
T Consensus       275 ~e~G~lwva~~~~  287 (355)
T 3sre_A          275 PVTGDLWVGCHPN  287 (355)
T ss_dssp             TTTCCEEEEEESC
T ss_pred             CCCCcEEEEecCC
Confidence            9 58877766544

>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}

Probab=97.44  E-value=0.038  Score=45.95  Aligned_cols=228  Identities=17%  Similarity=0.228  Sum_probs=113.9

Q ss_pred             cceEEEEEeecCCCCCcEEEEeeCCCcEEEEcCCCCcce--eec---cccccceEEEEeCCC----CCEEEEeeCC----
Q 021247           15 ESVWAVTWVPATETRPALLLTGSLDETVKLWRPDDMQLE--RTN---TGHCLGVVSVAAHPS----GIIAASASLD----   81 (315)
Q Consensus        15 ~~v~~v~~~~~~~~~~~~l~sgs~d~~v~~w~~~~~~~~--~~~---~~h~~~v~~~~~~~~----g~~l~s~~~d----   81 (315)
                      ...++++|.|++.     ++.+..+|.|++++ + .+..  ...   .........++++|+    +.+.++-...    
T Consensus        31 ~~P~~ia~~pdG~-----l~V~e~~g~I~~i~-~-g~~~~~~~~~v~~~g~~~p~gia~~pdf~~~g~lYv~~~~~~~~~  103 (352)
T 2ism_A           31 EVPWALAFLPDGG-----MLIAERPGRIRLFR-E-GRLSTYAELSVYHRGESGLLGLALHPRFPQEPYVYAYRTVAEGGL  103 (352)
T ss_dssp             SCEEEEEECTTSC-----EEEEETTTEEEEEE-T-TEEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEECTTSS
T ss_pred             CCceEEEEcCCCe-----EEEEeCCCeEEEEE-C-CCccEeecceEeecCCCCceeEEECCCCCCCCEEEEEEecCCCCC
Confidence            3567899988764     55566779999997 2 2211  111   112346789999998    5555554432    


Q ss_pred             -CeEEEEECCCCc-----ee-EEeeC---CcccEEEEEECCCCCeEEEEecCC-------------CeEEEEecCCccee
Q 021247           82 -SFVRVFDVDTNA-----SI-ATLEA---SPSEVWQMQFDPKGTTLAVAGGGS-------------ASVKLWDTATWNLI  138 (315)
Q Consensus        82 -~~i~~w~~~~~~-----~~-~~~~~---~~~~v~~~~~~~~~~~~~~~~~~d-------------~~i~~~d~~~~~~~  138 (315)
                       ..|..++...+.     .+ ..+..   .......++|.|+|. ++++.+..             +.|.-++... +  
T Consensus       104 ~~~v~r~~~~~~~~~~~~~l~~~~p~~~~~~h~~~~l~~~pdG~-Lyv~~G~~~~~~~~~d~~~~~g~I~ri~~dG-~--  179 (352)
T 2ism_A          104 RNQVVRLRHLGERGVLDRVVLDGIPARPHGLHSGGRIAFGPDGM-LYVTTGEVYERELAQDLASLGGKILRLTPEG-E--  179 (352)
T ss_dssp             EEEEEEEEECSSCEEEEEEEEEEECCCTTCCCCCCCEEECTTSC-EEEECCCTTCGGGGGCTTCSSSEEEEECTTS-S--
T ss_pred             ccEEEEEEeCCCCcCceEEEEEeCCCCCCCCcCCceEEECCCCC-EEEEECCCCCCccccCCCCCceEEEEEcCCC-C--
Confidence             567778876432     11 11221   111235789999986 44543321             3344444321 0  


Q ss_pred             eeecCCCCCCC------CCCc-cCCCCcceEEEEECC-CCCEEEEecCCCc--------EEEEEccc-------------
Q 021247          139 ATLSIPRPEGL------KPTD-KSSSKKFVLSVAWSP-DGRRIACGSMDGT--------ISVFDVTR-------------  189 (315)
Q Consensus       139 ~~~~~~~~~~~------~~~~-~~~~~~~i~~~~~~~-~~~~l~~~s~dg~--------i~i~d~~~-------------  189 (315)
                          ++.....      .... ...+ .....++|+| +++.+++-.....        |.+.....             
T Consensus       180 ----~p~~npf~~~~~~~~~i~a~G~-rnp~g~a~d~~~g~l~v~d~g~~~~~~~~~dei~~i~~G~nyGwp~~~g~~~~  254 (352)
T 2ism_A          180 ----PAPGNPFLGRRGARPEVYSLGH-RNPQGLAWHPKTGELFSSEHGPSGEQGYGHDEVNLIVPGGNYGWPRVVGRGND  254 (352)
T ss_dssp             ----BCTTCTTTTCTTSCTTEEEECC-SEECCCEECTTTCCEEEEEECC------CCCEEEEECTTCBCCTTTCCSCCCC
T ss_pred             ----CCCCCcccCCCCCCccEEEEcC-CCcccEEEECCCCCEEEEEcCCCCCCCCCCeEEEEeccCCcCCCCcccCCCCC
Confidence                0000000      0000 0011 1245789999 5665554332222        33332111             


Q ss_pred             ---ceeeeeecCCccceEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCe----e--EEEeecccccEEEEEEcCCCCeEEE
Q 021247          190 ---AKFLHHLEGHFMPVRSLVYSPVDPRVLFSASDDTHVHMYDAEGKS----L--VTAMSGHASWVLSVDASPDGAAITT  260 (315)
Q Consensus       190 ---~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~----~--~~~~~~~~~~i~~~~~~~~~~~l~s  260 (315)
                         ......+. +......++|.  ++.++++....+.|...+++...    .  ...+......+..+++.|+|.+.++
T Consensus       255 ~~~~~p~~~~~-~~~ap~G~~~~--~G~l~v~~~~~~~v~~v~~~~~~~~~~~~~~~~~~~~~~rp~~v~~~pdG~lyv~  331 (352)
T 2ism_A          255 PRYRDPLYFWP-QGFPPGNLAFF--RGDLYVAGLRGQALLRLVLEGERGRWRVLRVETALSGFGRLREVQVGPDGALYVT  331 (352)
T ss_dssp             TTSCCCSEECT-TCCCEEEEEEE--TTEEEEEETTTTEEEEEEEEEETTEEEEEEEEEEEESSCCEEEEEECTTSCEEEE
T ss_pred             CCCcCCeEecC-CCCCCcceEEE--CCEEEEEECCCCEEEEEEECCCCcceeecchheecccCCCeeEEEECCCCcEEEE
Confidence               00111221 12234566763  45666666667777777665321    1  1122122356888999999876655


Q ss_pred             E
Q 021247          261 G  261 (315)
Q Consensus       261 ~  261 (315)
                      .
T Consensus       332 ~  332 (352)
T 2ism_A          332 T  332 (352)
T ss_dssp             E
T ss_pred             E
Confidence            4

>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}

Probab=97.37  E-value=0.026  Score=46.00  Aligned_cols=210  Identities=13%  Similarity=0.078  Sum_probs=98.3

Q ss_pred             EEEEeeCCCeEEEEECCCCceeEE-eeCCcccEEEEEECCCCCeEEEEecC-------C----CeEEEEecCCcceeeee
Q 021247           74 IAASASLDSFVRVFDVDTNASIAT-LEASPSEVWQMQFDPKGTTLAVAGGG-------S----ASVKLWDTATWNLIATL  141 (315)
Q Consensus        74 ~l~s~~~d~~i~~w~~~~~~~~~~-~~~~~~~v~~~~~~~~~~~~~~~~~~-------d----~~i~~~d~~~~~~~~~~  141 (315)
                      +++.|+  ..+..+|..+++-... ...............++. +++.|+.       .    ..+.+||..+.+....-
T Consensus         7 l~~~GG--~~~~~yd~~~~~W~~~~~~~p~~r~~~~~~~~~~~-iyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~   83 (315)
T 4asc_A            7 IFMISE--EGAVAYDPAANECYCASLSSQVPKNHVSLVTKENQ-VFVAGGLFYNEDNKEDPMSAYFLQFDHLDSEWLGMP   83 (315)
T ss_dssp             EEEEET--TEEEEEETTTTEEEEEECCCCSCSSEEEEECTTCC-EEEEEEEEECSSCSSSCEEEEEEEEETTTTEEEECC
T ss_pred             EEEEcC--CceEEECCCCCeEecCCCCCCCCccceEEEEECCE-EEEEcCcccCCCCCccccccceEEecCCCCeEEECC
Confidence            344454  5688999988764321 111111111222223444 4444542       1    12778888775543221


Q ss_pred             cCCCCCCCCCCccCCCCcceEEEEECCCCCEEEEecCC--------CcEEEEEcccceeeee--ecCCccceEEEEEcCC
Q 021247          142 SIPRPEGLKPTDKSSSKKFVLSVAWSPDGRRIACGSMD--------GTISVFDVTRAKFLHH--LEGHFMPVRSLVYSPV  211 (315)
Q Consensus       142 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~s~d--------g~i~i~d~~~~~~~~~--~~~~~~~v~~~~~~~~  211 (315)
                      ..+.       ....+    ..+.+  +++.++.|+.+        ..+.+||+.+.+....  +.........+.   .
T Consensus        84 ~~p~-------~r~~~----~~~~~--~~~lyv~GG~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~---~  147 (315)
T 4asc_A           84 PLPS-------PRCLF----GLGEA--LNSIYVVGGREIKDGERCLDSVMCYDRLSFKWGESDPLPYVVYGHTVLS---H  147 (315)
T ss_dssp             CBSS-------CEESC----EEEEE--TTEEEEECCEESSTTCCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEE---E
T ss_pred             CCCc-------chhce----eEEEE--CCEEEEEeCCcCCCCCcccceEEEECCCCCcEeECCCCCCcccceeEEE---E
Confidence            1111       11111    12222  55666666632        3589999987764332  111111112222   2


Q ss_pred             CCcEEEEEeC-C-----CeEEEEeCCCCeeEE--EeecccccEEEEEEcCCCCeEEEEeCCC-----cEEEEecCccc--
Q 021247          212 DPRVLFSASD-D-----THVHMYDAEGKSLVT--AMSGHASWVLSVDASPDGAAITTGSSDR-----TVKLWDLNMRA--  276 (315)
Q Consensus       212 ~~~~l~s~~~-d-----~~i~~wd~~~~~~~~--~~~~~~~~i~~~~~~~~~~~l~s~~~d~-----~i~iwd~~~~~--  276 (315)
                      ++++++.|+. +     ..+.+||..+.+-..  .+......-..+.+  ++++++.|+.++     .+.+||..+.+  
T Consensus       148 ~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~  225 (315)
T 4asc_A          148 MDLVYVIGGKGSDRKCLNKMCVYDPKKFEWKELAPMQTARSLFGATVH--DGRIIVAAGVTDTGLTSSAEVYSITDNKWA  225 (315)
T ss_dssp             TTEEEEECCBCTTSCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEE--TTEEEEEEEECSSSEEEEEEEEETTTTEEE
T ss_pred             CCEEEEEeCCCCCCcccceEEEEeCCCCeEEECCCCCCchhceEEEEE--CCEEEEEeccCCCCccceEEEEECCCCeEE
Confidence            4567777775 2     358899987653222  11111111111222  567778887655     47788886542  


Q ss_pred             eehcccccccceEEEEEeeCCCEEEEEeCC
Q 021247          277 AMQSMTNHTDQVWGVSFRPLGGRVVSVSDD  306 (315)
Q Consensus       277 ~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d  306 (315)
                      .+..+.........+.  -+++.++.||.+
T Consensus       226 ~~~~~p~~r~~~~~~~--~~~~l~v~GG~~  253 (315)
T 4asc_A          226 PFEAFPQERSSLSLVS--LVGTLYAIGGFA  253 (315)
T ss_dssp             EECCCSSCCBSCEEEE--ETTEEEEEEEEE
T ss_pred             ECCCCCCcccceeEEE--ECCEEEEECCcc
Confidence            2322222111222222  255666677653

>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}

Probab=97.34  E-value=0.051  Score=45.19  Aligned_cols=237  Identities=11%  Similarity=0.092  Sum_probs=123.1

Q ss_pred             ceEEEEeCCCCC-EEEEeeCCCeEEEEECCCCceeEEe-------eCCcccEEEEEECCC---CCeEEEEecC-------
Q 021247           62 GVVSVAAHPSGI-IAASASLDSFVRVFDVDTNASIATL-------EASPSEVWQMQFDPK---GTTLAVAGGG-------  123 (315)
Q Consensus        62 ~v~~~~~~~~g~-~l~s~~~d~~i~~w~~~~~~~~~~~-------~~~~~~v~~~~~~~~---~~~~~~~~~~-------  123 (315)
                      ....+.+.|+|. +++ +...+.|++++.. +.....+       .........++++|+   +..++++-..       
T Consensus        19 ~P~~i~~~pdG~~l~V-~e~~G~i~~~~~~-g~~~~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lYv~~~~~~~~g~~   96 (353)
T 2g8s_A           19 HPWALAFLPDNHGMLI-TLRGGELRHWQAG-KGLSAPLSGVPDVWAHGQGGLLDVVLAPDFAQSRRIWLSYSEVGDDGKA   96 (353)
T ss_dssp             SEEEEEECSTTCCEEE-EETTTEEEEEETT-TEECCCCBSCCCCCCSTTCSEEEEEECTTHHHHCEEEEEEEEECSSSCE
T ss_pred             CcEEEEEcCCCCEEEE-EeCCceEEEEeCC-CceeeEecCCcccccCCCCCceeEEECCCCCCCCEEEEEEeCCCCCCCc
Confidence            457899999998 665 4567899999853 3211111       112234688999996   5556555322       


Q ss_pred             CCeEEEEecCCc--ce--eeee--cCCCCCCCCCCccCCCCcceEEEEECCCCCEEEEecC-------------CCcEEE
Q 021247          124 SASVKLWDTATW--NL--IATL--SIPRPEGLKPTDKSSSKKFVLSVAWSPDGRRIACGSM-------------DGTISV  184 (315)
Q Consensus       124 d~~i~~~d~~~~--~~--~~~~--~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~s~-------------dg~i~i  184 (315)
                      ...|..++....  +.  ...+  .++..        .........++|.|+|.+.++.+.             .|.|.-
T Consensus        97 ~~~v~r~~~~~~~~~~~~~~~i~~~~p~~--------~~~~h~~~~l~~~pdG~Lyv~~Gd~~~~~~~q~~~~~~g~I~r  168 (353)
T 2g8s_A           97 GTAVGYGRLSDDLSKVTDFRTVFRQMPKL--------STGNHFGGRLVFDGKGYLFIALGENNQRPTAQDLDKLQGKLVR  168 (353)
T ss_dssp             EEEEEEEEECTTSSBEEEEEEEEECSSCC--------BSSSCCCCCEEECSSSEEEEEECCTTCGGGGGCTTSCTTEEEE
T ss_pred             eeEEEEEEECCCCCCCCceEEEEEECCCC--------CCCcccCccEEECCCCcEEEEECCCCCCCccCCCCCCCeEEEE
Confidence            224555555322  11  1111  01100        001122457999999965555432             246777


Q ss_pred             EEcccce------------eeeee-cCCccceEEEEEcCCCCcEEEEEeC-CC--eEEEEeCCC----------------
Q 021247          185 FDVTRAK------------FLHHL-EGHFMPVRSLVYSPVDPRVLFSASD-DT--HVHMYDAEG----------------  232 (315)
Q Consensus       185 ~d~~~~~------------~~~~~-~~~~~~v~~~~~~~~~~~~l~s~~~-d~--~i~~wd~~~----------------  232 (315)
                      ++....-            ....+ .++ .....++|.|..++++++-.. ++  .|.+...-.                
T Consensus       169 i~~dG~~p~~npf~~~~~~~~~i~a~G~-rnp~gl~~d~~~g~l~~~d~g~~~~dei~~i~~G~nyGwp~~~~~~~~~~~  247 (353)
T 2g8s_A          169 LTDQGEIPDDNPFIKESGVRAEIWSYGI-RNPQGMAMNPWSNALWLNEHGPRGGDEINIPQKGKNYGWPLATWGINYSGF  247 (353)
T ss_dssp             EETTSCCCTTCTTTTSTTSCTTEEEECC-SEEEEEEEETTTTEEEEEEECSBSCEEEECCCTTCBCCTTTBCSSBCTTSS
T ss_pred             ECCCCCCCCCCCCcCCCCCCccEEEEcC-cCccceEEECCCCCEEEEecCCCCCcEEeEeccCCcCCCCCccCCCCCCCC
Confidence            7764320            11111 223 345788999855555544322 11  222211000                


Q ss_pred             -------------CeeEEEeecccccEEEEEEcC-------CCCeEEEEeCCCcEEEEecCccceehc---ccccccceE
Q 021247          233 -------------KSLVTAMSGHASWVLSVDASP-------DGAAITTGSSDRTVKLWDLNMRAAMQS---MTNHTDQVW  289 (315)
Q Consensus       233 -------------~~~~~~~~~~~~~i~~~~~~~-------~~~~l~s~~~d~~i~iwd~~~~~~~~~---~~~~~~~v~  289 (315)
                                   ...+..+. +...+..+.+..       ++.++++.-..+.|...+++.++....   +......+.
T Consensus       248 ~~~~~~~~~~~~~~~P~~~~~-~~~ap~G~~~y~g~~fp~~~g~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~rp~  326 (353)
T 2g8s_A          248 KIPEAKGEIVAGTEQPVFYWK-DSPAVSGMAFYNSDKFPQWQQKLFIGALKDKDVIVMSVNGDKVTEDGRILTDRGQRIR  326 (353)
T ss_dssp             CCTTCCBSSCTTSCCCSEEES-SCCCEEEEEEECCSSSGGGTTEEEEEETTTTEEEEEEEETTEEEEEEEESGGGCCCEE
T ss_pred             ccCcccCCCCCCccCCeEEeC-CCcCcceeEEECCccCcccCCcEEEEEccCCEEEEEEeCCCeEeeeEEcccCCCCcee
Confidence                         00011111 223566777753       467777777778888887765433221   122234788


Q ss_pred             EEEEeeCCCEEEEEe-CCCcEE
Q 021247          290 GVSFRPLGGRVVSVS-DDKSIS  310 (315)
Q Consensus       290 ~~~~s~~~~~l~s~~-~d~~i~  310 (315)
                      .+++.|+|...++.. .+|.|.
T Consensus       327 ~v~~~pdG~lyv~td~~~g~I~  348 (353)
T 2g8s_A          327 DVRTGPDGYLYVLTDESSGELL  348 (353)
T ss_dssp             EEEECTTSCEEEEECSTTEEEE
T ss_pred             EEEECCCCcEEEEEeCCCCEEE
Confidence            999999998665433 455543

>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A

Probab=97.27  E-value=0.03  Score=45.47  Aligned_cols=221  Identities=13%  Similarity=0.132  Sum_probs=106.1

Q ss_pred             CCCCEEEEeeCC----CeEEEEECCCCceeEEeeCCcc---cEEEEEECCCCCeEEEEecC----C-----CeEEEEecC
Q 021247           70 PSGIIAASASLD----SFVRVFDVDTNASIATLEASPS---EVWQMQFDPKGTTLAVAGGG----S-----ASVKLWDTA  133 (315)
Q Consensus        70 ~~g~~l~s~~~d----~~i~~w~~~~~~~~~~~~~~~~---~v~~~~~~~~~~~~~~~~~~----d-----~~i~~~d~~  133 (315)
                      -++.+++.|+.+    ..+.++|..+.+-... ...+.   .-..+.+   +..+++.|+.    +     ..+.+||..
T Consensus        23 ~~~~i~v~GG~~~~~~~~~~~~d~~~~~W~~~-~~~p~~r~~~~~~~~---~~~lyv~GG~~~~~~~~~~~~~~~~~d~~   98 (308)
T 1zgk_A           23 VGRLIYTAGGYFRQSLSYLEAYNPSNGTWLRL-ADLQVPRSGLAGCVV---GGLLYAVGGRNNSPDGNTDSSALDCYNPM   98 (308)
T ss_dssp             CCCCEEEECCBSSSBCCCEEEEETTTTEEEEC-CCCSSCCBSCEEEEE---TTEEEEECCEEEETTEEEECCCEEEEETT
T ss_pred             CCCEEEEEeCcCCCCcceEEEEcCCCCeEeEC-CCCCcccccceEEEE---CCEEEEECCCcCCCCCCeecceEEEECCC
Confidence            345555555532    3577888776653221 11111   1111222   3445566654    2     467888887


Q ss_pred             CcceeeeecCCCCCCCCCCccCCCCcceEEEEECCCCCEEEEecCC-----CcEEEEEcccceeeee--ecCCccceEEE
Q 021247          134 TWNLIATLSIPRPEGLKPTDKSSSKKFVLSVAWSPDGRRIACGSMD-----GTISVFDVTRAKFLHH--LEGHFMPVRSL  206 (315)
Q Consensus       134 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~s~d-----g~i~i~d~~~~~~~~~--~~~~~~~v~~~  206 (315)
                      +.+....-..+.       ....    ...+.+  +++.++.|+.+     ..+.+||+.+.+....  +.........+
T Consensus        99 ~~~W~~~~~~p~-------~r~~----~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~  165 (308)
T 1zgk_A           99 TNQWSPCAPMSV-------PRNR----IGVGVI--DGHIYAVGGSHGCIHHNSVERYEPERDEWHLVAPMLTRRIGVGVA  165 (308)
T ss_dssp             TTEEEECCCCSS-------CCBT----CEEEEE--TTEEEEECCEETTEECCCEEEEETTTTEEEECCCCSSCCBSCEEE
T ss_pred             CCeEeECCCCCc-------Cccc----cEEEEE--CCEEEEEcCCCCCcccccEEEECCCCCeEeECCCCCccccceEEE
Confidence            755433211111       1111    122222  56666776643     3588999987765432  11111111222


Q ss_pred             EEcCCCCcEEEEEeCC-----CeEEEEeCCCCeeEEE--eecccccEEEEEEcCCCCeEEEEeCC-----CcEEEEecCc
Q 021247          207 VYSPVDPRVLFSASDD-----THVHMYDAEGKSLVTA--MSGHASWVLSVDASPDGAAITTGSSD-----RTVKLWDLNM  274 (315)
Q Consensus       207 ~~~~~~~~~l~s~~~d-----~~i~~wd~~~~~~~~~--~~~~~~~i~~~~~~~~~~~l~s~~~d-----~~i~iwd~~~  274 (315)
                      .+   ++.+++.|+.+     ..+.+||..+.+-...  +......-..+.+  ++++++.|+.+     ..+.+||+.+
T Consensus       166 ~~---~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~v~~yd~~~  240 (308)
T 1zgk_A          166 VL---NRLLYAVGGFDGTNRLNSAECYYPERNEWRMITAMNTIRSGAGVCVL--HNCIYAAGGYDGQDQLNSVERYDVET  240 (308)
T ss_dssp             EE---TTEEEEECCBCSSCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEE--TTEEEEECCBCSSSBCCCEEEEETTT
T ss_pred             EE---CCEEEEEeCCCCCCcCceEEEEeCCCCeEeeCCCCCCccccceEEEE--CCEEEEEeCCCCCCccceEEEEeCCC
Confidence            22   45677777654     4588899876543221  1111111112222  56777777765     4588999876


Q ss_pred             cc--eehcccccccceEEEEEeeCCCEEEEEeCC-----CcEEEeec
Q 021247          275 RA--AMQSMTNHTDQVWGVSFRPLGGRVVSVSDD-----KSISLYEY  314 (315)
Q Consensus       275 ~~--~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d-----~~i~i~~~  314 (315)
                      .+  .+..+.........+.  -+++.++.||.+     ..+.+||.
T Consensus       241 ~~W~~~~~~p~~r~~~~~~~--~~~~i~v~GG~~~~~~~~~v~~yd~  285 (308)
T 1zgk_A          241 ETWTFVAPMKHRRSALGITV--HQGRIYVLGGYDGHTFLDSVECYDP  285 (308)
T ss_dssp             TEEEECCCCSSCCBSCEEEE--ETTEEEEECCBCSSCBCCEEEEEET
T ss_pred             CcEEECCCCCCCccceEEEE--ECCEEEEEcCcCCCcccceEEEEcC
Confidence            43  2222222111222222  255666777654     34566664

>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A

Probab=97.21  E-value=0.027  Score=45.71  Aligned_cols=221  Identities=15%  Similarity=0.137  Sum_probs=107.0

Q ss_pred             cEEEEeeCC----CcEEEEcCCCCcceee--ccccccceEEEEeCCCCCEEEEeeC----C-----CeEEEEECCCCcee
Q 021247           31 ALLLTGSLD----ETVKLWRPDDMQLERT--NTGHCLGVVSVAAHPSGIIAASASL----D-----SFVRVFDVDTNASI   95 (315)
Q Consensus        31 ~~l~sgs~d----~~v~~w~~~~~~~~~~--~~~h~~~v~~~~~~~~g~~l~s~~~----d-----~~i~~w~~~~~~~~   95 (315)
                      .+++.|+.+    ..+.+||+.+.+-...  .+.....-..+..  ++.+++.|+.    +     ..+.++|+.+.+-.
T Consensus        26 ~i~v~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~~~~~d~~~~~W~  103 (308)
T 1zgk_A           26 LIYTAGGYFRQSLSYLEAYNPSNGTWLRLADLQVPRSGLAGCVV--GGLLYAVGGRNNSPDGNTDSSALDCYNPMTNQWS  103 (308)
T ss_dssp             CEEEECCBSSSBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEE--TTEEEEECCEEEETTEEEECCCEEEEETTTTEEE
T ss_pred             EEEEEeCcCCCCcceEEEEcCCCCeEeECCCCCcccccceEEEE--CCEEEEECCCcCCCCCCeecceEEEECCCCCeEe
Confidence            466667642    3678888766542221  1111111111222  5667777765    2     45788888776532


Q ss_pred             EEeeCC--cccEEEEEECCCCCeEEEEecCC-----CeEEEEecCCcceeeeecCCCCCCCCCCccCCCCcceEEEEECC
Q 021247           96 ATLEAS--PSEVWQMQFDPKGTTLAVAGGGS-----ASVKLWDTATWNLIATLSIPRPEGLKPTDKSSSKKFVLSVAWSP  168 (315)
Q Consensus        96 ~~~~~~--~~~v~~~~~~~~~~~~~~~~~~d-----~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~  168 (315)
                      ..-...  ...-..+.+  + ..+++.|+.+     ..+.+||..+.+....-..+.       ....    -..+.+  
T Consensus       104 ~~~~~p~~r~~~~~~~~--~-~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~-------~r~~----~~~~~~--  167 (308)
T 1zgk_A          104 PCAPMSVPRNRIGVGVI--D-GHIYAVGGSHGCIHHNSVERYEPERDEWHLVAPMLT-------RRIG----VGVAVL--  167 (308)
T ss_dssp             ECCCCSSCCBTCEEEEE--T-TEEEEECCEETTEECCCEEEEETTTTEEEECCCCSS-------CCBS----CEEEEE--
T ss_pred             ECCCCCcCccccEEEEE--C-CEEEEEcCCCCCcccccEEEECCCCCeEeECCCCCc-------cccc----eEEEEE--
Confidence            211111  111112222  3 3455555533     467888887655433221111       1111    122222  


Q ss_pred             CCCEEEEecCC-----CcEEEEEcccceeeee--ecCCccceEEEEEcCCCCcEEEEEeCC-----CeEEEEeCCCCeeE
Q 021247          169 DGRRIACGSMD-----GTISVFDVTRAKFLHH--LEGHFMPVRSLVYSPVDPRVLFSASDD-----THVHMYDAEGKSLV  236 (315)
Q Consensus       169 ~~~~l~~~s~d-----g~i~i~d~~~~~~~~~--~~~~~~~v~~~~~~~~~~~~l~s~~~d-----~~i~~wd~~~~~~~  236 (315)
                      +++.++.|+.+     ..+.+||+.+.+....  +.........+.+   ++++++.|+.+     ..+.+||+++.+-.
T Consensus       168 ~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~---~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~  244 (308)
T 1zgk_A          168 NRLLYAVGGFDGTNRLNSAECYYPERNEWRMITAMNTIRSGAGVCVL---HNCIYAAGGYDGQDQLNSVERYDVETETWT  244 (308)
T ss_dssp             TTEEEEECCBCSSCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEE---TTEEEEECCBCSSSBCCCEEEEETTTTEEE
T ss_pred             CCEEEEEeCCCCCCcCceEEEEeCCCCeEeeCCCCCCccccceEEEE---CCEEEEEeCCCCCCccceEEEEeCCCCcEE
Confidence            56666777654     4589999987765432  1111111122222   56677777654     45889998775432


Q ss_pred             EE--eecccccEEEEEEcCCCCeEEEEeCC-----CcEEEEecCc
Q 021247          237 TA--MSGHASWVLSVDASPDGAAITTGSSD-----RTVKLWDLNM  274 (315)
Q Consensus       237 ~~--~~~~~~~i~~~~~~~~~~~l~s~~~d-----~~i~iwd~~~  274 (315)
                      ..  +.........+.+  ++++++.|+.+     ..+.+||..+
T Consensus       245 ~~~~~p~~r~~~~~~~~--~~~i~v~GG~~~~~~~~~v~~yd~~~  287 (308)
T 1zgk_A          245 FVAPMKHRRSALGITVH--QGRIYVLGGYDGHTFLDSVECYDPDT  287 (308)
T ss_dssp             ECCCCSSCCBSCEEEEE--TTEEEEECCBCSSCBCCEEEEEETTT
T ss_pred             ECCCCCCCccceEEEEE--CCEEEEEcCcCCCcccceEEEEcCCC
Confidence            21  1111111111222  56677777754     3466777764

>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}

Probab=97.18  E-value=0.068  Score=43.56  Aligned_cols=209  Identities=14%  Similarity=0.122  Sum_probs=96.0

Q ss_pred             EEEEeeCCCeEEEEECCCCceeEE-eeC-CcccEEEEEECCCCCeEEEEecC----CC-------eEEEEecCCcceeee
Q 021247           74 IAASASLDSFVRVFDVDTNASIAT-LEA-SPSEVWQMQFDPKGTTLAVAGGG----SA-------SVKLWDTATWNLIAT  140 (315)
Q Consensus        74 ~l~s~~~d~~i~~w~~~~~~~~~~-~~~-~~~~v~~~~~~~~~~~~~~~~~~----d~-------~i~~~d~~~~~~~~~  140 (315)
                      +++.|+.  .+..+|..+++-... ... .+..-.++. ..++. +++.|+.    ++       .+.+||..+.+....
T Consensus        18 i~~~GG~--~~~~yd~~~~~W~~~~~~~~~~r~~~~~~-~~~~~-lyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~   93 (318)
T 2woz_A           18 ILLVNDT--AAVAYDPMENECYLTALAEQIPRNHSSIV-TQQNQ-VYVVGGLYVDEENKDQPLQSYFFQLDNVSSEWVGL   93 (318)
T ss_dssp             EEEECSS--EEEEEETTTTEEEEEEECTTSCSSEEEEE-CSSSC-EEEEESSCC-------CCCBEEEEEETTTTEEEEC
T ss_pred             hhhcccc--ceEEECCCCCceecccCCccCCccceEEE-EECCE-EEEECCcccCccccCCCccccEEEEeCCCCcEEEC
Confidence            3444443  378889887764331 111 111122222 23444 5555552    11       277788876554332


Q ss_pred             ecCCCCCCCCCCccCCCCcceEEEEECCCCCEEEEecCC-------CcEEEEEcccceeeee--ecCCccceEEEEEcCC
Q 021247          141 LSIPRPEGLKPTDKSSSKKFVLSVAWSPDGRRIACGSMD-------GTISVFDVTRAKFLHH--LEGHFMPVRSLVYSPV  211 (315)
Q Consensus       141 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~s~d-------g~i~i~d~~~~~~~~~--~~~~~~~v~~~~~~~~  211 (315)
                      -..+.       ....    ...+.+  +++.++.|+.+       ..+.+||+.+.+....  +.........+.   .
T Consensus        94 ~~~p~-------~r~~----~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~---~  157 (318)
T 2woz_A           94 PPLPS-------ARCL----FGLGEV--DDKIYVVAGKDLQTEASLDSVLCYDPVAAKWSEVKNLPIKVYGHNVIS---H  157 (318)
T ss_dssp             SCBSS-------CBCS----CEEEEE--TTEEEEEEEEBTTTCCEEEEEEEEETTTTEEEEECCCSSCEESCEEEE---E
T ss_pred             CCCCc-------cccc----cceEEE--CCEEEEEcCccCCCCcccceEEEEeCCCCCEeECCCCCCcccccEEEE---E
Confidence            11111       1111    112222  46666666643       3588899887765432  111111111122   2


Q ss_pred             CCcEEEEEeC------CCeEEEEeCCCCeeEEE--eecccccEEEEEEcCCCCeEEEEeCCC-----cEEEEecCccc--
Q 021247          212 DPRVLFSASD------DTHVHMYDAEGKSLVTA--MSGHASWVLSVDASPDGAAITTGSSDR-----TVKLWDLNMRA--  276 (315)
Q Consensus       212 ~~~~l~s~~~------d~~i~~wd~~~~~~~~~--~~~~~~~i~~~~~~~~~~~l~s~~~d~-----~i~iwd~~~~~--  276 (315)
                      ++.+++.|+.      -..+.+||..+.+-...  +.........+.  -++++++.|+.++     .+.+||+.+.+  
T Consensus       158 ~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~  235 (318)
T 2woz_A          158 NGMIYCLGGKTDDKKCTNRVFIYNPKKGDWKDLAPMKTPRSMFGVAI--HKGKIVIAGGVTEDGLSASVEAFDLKTNKWE  235 (318)
T ss_dssp             TTEEEEECCEESSSCBCCCEEEEETTTTEEEEECCCSSCCBSCEEEE--ETTEEEEEEEEETTEEEEEEEEEETTTCCEE
T ss_pred             CCEEEEEcCCCCCCCccceEEEEcCCCCEEEECCCCCCCcccceEEE--ECCEEEEEcCcCCCCccceEEEEECCCCeEE
Confidence            5567777764      23588999887643221  111111111122  2567777776543     46678876543  


Q ss_pred             eehcccccccceEEEEEeeCCCEEEEEeCC
Q 021247          277 AMQSMTNHTDQVWGVSFRPLGGRVVSVSDD  306 (315)
Q Consensus       277 ~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d  306 (315)
                      .+..++........+  ..++..++.||.+
T Consensus       236 ~~~~~p~~r~~~~~~--~~~~~i~v~GG~~  263 (318)
T 2woz_A          236 VMTEFPQERSSISLV--SLAGSLYAIGGFA  263 (318)
T ss_dssp             ECCCCSSCCBSCEEE--EETTEEEEECCBC
T ss_pred             ECCCCCCcccceEEE--EECCEEEEECCee
Confidence            233232222122222  2345566676654

>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...

Probab=97.17  E-value=0.2  Score=48.62  Aligned_cols=140  Identities=15%  Similarity=0.187  Sum_probs=83.5

Q ss_pred             CCEEEEec----------CCCcEEEEEcccceeeeee-cCCccceEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCeeEEE
Q 021247          170 GRRIACGS----------MDGTISVFDVTRAKFLHHL-EGHFMPVRSLVYSPVDPRVLFSASDDTHVHMYDAEGKSLVTA  238 (315)
Q Consensus       170 ~~~l~~~s----------~dg~i~i~d~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~  238 (315)
                      ..+|++|+          ..|.|++|++..++..... ....++++++.-.  +++++++.  ..+|++|++...+.+..
T Consensus       844 ~~~lvVGTa~~~~~e~~~~~Gri~vf~v~~~kL~lv~~~~v~g~v~al~~~--~g~Lla~i--g~~l~vy~l~~~~~L~~  919 (1158)
T 3ei3_A          844 NTYFIVGTAMVYPEEAEPKQGRIVVFQYSDGKLQTVAEKEVKGAVYSMVEF--NGKLLASI--NSTVRLYEWTTEKELRT  919 (1158)
T ss_dssp             CCEEEEEEEECCTTCSSCCCEEEEEEEEETTEEEEEEEEEESSCEEEEEEE--TTEEEEEE--TTEEEEEEECTTSCEEE
T ss_pred             CEEEEEEeeecCCCCCCCCceEEEEEEEECCEEEEEEEEEcCCcCEEEeee--CCEEEEEc--CCEEEEEECCCCceEEE
Confidence            45777776          3578999998644332111 1235677877643  45544433  46899999876543331


Q ss_pred             eecccccEEEEEEcCCCCeEEEEeCCCcEEEEecCcc-ceehcccc--cccceEEEEEeeCCCEEEEEeCCCcEEEeec
Q 021247          239 MSGHASWVLSVDASPDGAAITTGSSDRTVKLWDLNMR-AAMQSMTN--HTDQVWGVSFRPLGGRVVSVSDDKSISLYEY  314 (315)
Q Consensus       239 ~~~~~~~i~~~~~~~~~~~l~s~~~d~~i~iwd~~~~-~~~~~~~~--~~~~v~~~~~s~~~~~l~s~~~d~~i~i~~~  314 (315)
                      -..+-..|..+.....+.+++.|..-..|.+...+.. ..+..+..  +...++++.+-.+ ..++.+..+|+|.++.+
T Consensus       920 ~~~~~~~i~~~~l~~~~~~I~vgD~~~Sv~~~~y~~~~~~L~~~a~D~~~~~vta~~~ld~-~t~l~aD~~gNl~vl~~  997 (1158)
T 3ei3_A          920 ECNHYNNIMALYLKTKGDFILVGDLMRSVLLLAYKPMEGNFEEIARDFNPNWMSAVEILDD-DNFLGAENAFNLFVCQK  997 (1158)
T ss_dssp             EEEECCCSCEEEEEEETTEEEEEESSBCEEEEEEETTTTEEEEEEECCSCBCEEEEEEEET-TEEEEEETTSEEEEEEE
T ss_pred             EeeccccEEEEEEeccCCEEEEEEhhheEEEEEEEcCCCeEEEEEeecccccEEEEEEEcc-CcEEEEcCCCcEEEEec
Confidence            1111111333333335678888888888877654321 22333322  3457888888765 47788889999998865

>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*

Probab=97.15  E-value=0.036  Score=45.98  Aligned_cols=150  Identities=15%  Similarity=0.146  Sum_probs=85.7

Q ss_pred             EEEEECCCCCEEEEec------------CCCcEEEEEcccc--eee-eeecC-----CccceEEEEEcCC--CCcEEEEE
Q 021247          162 LSVAWSPDGRRIACGS------------MDGTISVFDVTRA--KFL-HHLEG-----HFMPVRSLVYSPV--DPRVLFSA  219 (315)
Q Consensus       162 ~~~~~~~~~~~l~~~s------------~dg~i~i~d~~~~--~~~-~~~~~-----~~~~v~~~~~~~~--~~~~l~s~  219 (315)
                      ..+...|+|..+++++            .+|.|.++|+.+.  +.. -.+.+     .......+.+.++  +..+|+.+
T Consensus        53 EDi~~~~~G~~~~s~~~~~pg~~~~~~~~~G~I~~~d~~~~~~~~~~l~~~g~~~~~~~f~PhGi~~~~d~dg~~~L~Vv  132 (355)
T 3sre_A           53 EDLEILPNGLAFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPAVSELEIIGNTLDISSFNPHGISTFIDDDNTVYLLVV  132 (355)
T ss_dssp             CEEEECTTSEEEEEECCC-----------CCEEEEEETTSSSCCEEECEEECSSCCGGGCCEEEEEEEECTTCCEEEEEE
T ss_pred             ceeEEcCCCeEEEEeccccCCCcccCCCCCCeEEEEecCCCCCceEEEEccCCCCCcCceeeeeeEEEECCCCcEEEEEE
Confidence            3566778776655552            6899999998632  211 11222     1234566666542  22234444


Q ss_pred             -eC--CCeEEEEeCCC--Ce--eEEEeecc-cccEEEEEEcCCCCeEEEEeC-----------------CCcEEEEecCc
Q 021247          220 -SD--DTHVHMYDAEG--KS--LVTAMSGH-ASWVLSVDASPDGAAITTGSS-----------------DRTVKLWDLNM  274 (315)
Q Consensus       220 -~~--d~~i~~wd~~~--~~--~~~~~~~~-~~~i~~~~~~~~~~~l~s~~~-----------------d~~i~iwd~~~  274 (315)
                       ..  +..+.+|+...  ..  .+..+.+. -...+++.+.++|++.++...                 .|.|..++.  
T Consensus       133 nh~~~~s~ielf~~d~~~~~~~~~~~~~g~~~~~pND~~v~~~G~fyvt~~~~ftd~~~~~~e~~~~~~~g~vyr~d~--  210 (355)
T 3sre_A          133 NHPGSSSTVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTYYSP--  210 (355)
T ss_dssp             ECSTTCCEEEEEEEETTTTEEEEEEEECCTTCSSEEEEEEEETTEEEEEESCSCSSHHHHHHHHHTTCCCEEEEEECT--
T ss_pred             ECCCCCCeEEEEEEECCCCEEEEEeccccCCCCCCceEEEeCCCCEEecCCcEeCCcccccchhhccCCccEEEEEEC--
Confidence             33  45677766543  32  22333332 245789999999987777541                 234444443  


Q ss_pred             cceehcccccccceEEEEEeeCCCEEE-EEeCCCcEEEeec
Q 021247          275 RAAMQSMTNHTDQVWGVSFRPLGGRVV-SVSDDKSISLYEY  314 (315)
Q Consensus       275 ~~~~~~~~~~~~~v~~~~~s~~~~~l~-s~~~d~~i~i~~~  314 (315)
                      ++ ...+...-...+.++||||++.|. +-+..++|..|++
T Consensus       211 ~~-~~~~~~~l~~pNGia~spDg~~lYvadt~~~~I~~~~~  250 (355)
T 3sre_A          211 ND-VRVVAEGFDFANGINISPDGKYVYIAELLAHKIHVYEK  250 (355)
T ss_dssp             TC-CEEEEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEE
T ss_pred             Ce-EEEeecCCcccCcceECCCCCEEEEEeCCCCeEEEEEE
Confidence            32 222222234678999999998775 4456788988886

>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1

Probab=97.13  E-value=0.098  Score=44.34  Aligned_cols=253  Identities=10%  Similarity=0.156  Sum_probs=153.8

Q ss_pred             CcEEEEcCCCCcceeeccccccceEEEEeCCCCCEEEEeeCCCeEEEEECCCCceeEEeeCCcccEEEEEECCCCCeEEE
Q 021247           40 ETVKLWRPDDMQLERTNTGHCLGVVSVAAHPSGIIAASASLDSFVRVFDVDTNASIATLEASPSEVWQMQFDPKGTTLAV  119 (315)
Q Consensus        40 ~~v~~w~~~~~~~~~~~~~h~~~v~~~~~~~~g~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~  119 (315)
                      ..|.+-|+.+.......+-   ..-+.-.+|..+.++--+ ..+++++|+++.+.+....... +|.--+|-.. +.+.+
T Consensus        48 ~~vvIiDl~~~~~~~rrpi---~AdsAIMnP~~~iiALra-g~~lQiFnle~K~klks~~~~e-~VvfWkWis~-~~l~l  121 (494)
T 1bpo_A           48 AQVVIIDMNDPSNPIRRPI---SADSAIMNPASKVIALKA-GKTLQIFNIEMKSKMKAHTMTD-DVTFWKWISL-NTVAL  121 (494)
T ss_dssp             CEEEEEETTSTTSCEEEEC---CCSEEEECSSSSCEEEEE-TTEEEEEETTTTEEEEEEECSS-CCCEEEEEET-TEEEE
T ss_pred             CeEEEEECCCCCcceeccc---ccceeeeCCCCcEEEEec-CCeEEEEchHHhhhhcceecCC-CceEEEecCC-CeEEE
Confidence            3677777765433221111   112445678777776554 6899999999998888776543 4555566543 33444


Q ss_pred             EecCCCeEEEEecCCc-ceeeeecCCCCCCCCCCccCCCCcceEEEEECCCCCEEEEec-------CCCcEEEEEcccce
Q 021247          120 AGGGSASVKLWDTATW-NLIATLSIPRPEGLKPTDKSSSKKFVLSVAWSPDGRRIACGS-------MDGTISVFDVTRAK  191 (315)
Q Consensus       120 ~~~~d~~i~~~d~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~s-------~dg~i~i~d~~~~~  191 (315)
                      .  .+..|.-|++... .+.+.+.-+.         ......|..-..+++.+|++..+       ..|.+.+|..+.+ 
T Consensus       122 V--T~taVyHWsi~~~s~P~kvFdR~~---------~L~~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~er~-  189 (494)
T 1bpo_A          122 V--TDNAVYHWSMEGESQPVKMFDRHS---------SLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRK-  189 (494)
T ss_dssp             E--CSSEEEEEESSSSCCCEEEEECCG---------GGTTCEEEEEEECTTSSEEEEEEEEEETTEEEEEEEEEESTTC-
T ss_pred             E--cCCeeEEecccCCCCchhheecch---------hcccceEEEEEECCCCCeEEEEeecccCCcccceEEEeecccc-
Confidence            3  3568999998642 2222222111         01134578888899999886443       2467888987653 


Q ss_pred             eeeeecCCccceEEEEEcCC--CCcEEEEEeC---CCeEEEEeCCCC-----ee-EEEe------ecccccEEEEEEcCC
Q 021247          192 FLHHLEGHFMPVRSLVYSPV--DPRVLFSASD---DTHVHMYDAEGK-----SL-VTAM------SGHASWVLSVDASPD  254 (315)
Q Consensus       192 ~~~~~~~~~~~v~~~~~~~~--~~~~l~s~~~---d~~i~~wd~~~~-----~~-~~~~------~~~~~~i~~~~~~~~  254 (315)
                      .-+.+.+|......+.....  ...++.-+..   .+++++-++...     .. .+..      ..-.+...++..++.
T Consensus       190 ~sQ~ieGhaa~F~~~~~~g~~~~~~lf~fa~r~~~g~kLhi~Ei~~~~~~~~~f~kk~vdv~fppe~~~DFPvamqvs~k  269 (494)
T 1bpo_A          190 VSQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEK  269 (494)
T ss_dssp             CEEEECCSEEEEEEEECTTCSSEEEEEEEEECSTTCCEEEEEECSCCCTTCCCCCCEEEECCCCTTSTTCCEEEEEEETT
T ss_pred             ccchheeeeeeeEEEecCCCCCCceEEEEEEecCCCcEEEEEEcCCCccCCCCccceeeeeeCCcccccCceeEEEeccc
Confidence            34567788766555554321  1223443433   278999987432     01 1111      112455678888988


Q ss_pred             CCeEEEEeCCCcEEEEecCccceehcccccccceEEEEEeeCCCEEEEEeCCCcEE
Q 021247          255 GAAITTGSSDRTVKLWDLNMRAAMQSMTNHTDQVWGVSFRPLGGRVVSVSDDKSIS  310 (315)
Q Consensus       255 ~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~i~  310 (315)
                      -..+..-.+-|.|.++|+.++..+..-.--.+.|...+-+...+=++.....|.|.
T Consensus       270 ygviyviTK~G~i~lyDleTgt~i~~nrIs~~~iF~t~~~~~~~Gi~~Vnr~GqVl  325 (494)
T 1bpo_A          270 HDVVFLITKYGYIHLYDLETGTCIYMNRISGETIFVTAPHEATAGIIGVNRKGQVL  325 (494)
T ss_dssp             TTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEEETTTTEEEEEETTCEEE
T ss_pred             CCEEEEEecCceEEEEecccceeeeeecccCCceEEecccCCCCcEEEEccCceEE
Confidence            88888899999999999999988765444456666555555555566666666553

>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}

Probab=96.79  E-value=0.16  Score=41.33  Aligned_cols=220  Identities=12%  Similarity=0.133  Sum_probs=103.8

Q ss_pred             EEEEeeCCCcEEEEcCCCCcceee-ccccccceEEEEeCCCCCEEEEeeC----CC-------eEEEEECCCCceeEEee
Q 021247           32 LLLTGSLDETVKLWRPDDMQLERT-NTGHCLGVVSVAAHPSGIIAASASL----DS-------FVRVFDVDTNASIATLE   99 (315)
Q Consensus        32 ~l~sgs~d~~v~~w~~~~~~~~~~-~~~h~~~v~~~~~~~~g~~l~s~~~----d~-------~i~~w~~~~~~~~~~~~   99 (315)
                      +++.|+.  .+..||+.+.+-... ...............++.+++.|+.    ++       .+..+|..+.+-.. +.
T Consensus        18 i~~~GG~--~~~~yd~~~~~W~~~~~~~~~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~-~~   94 (318)
T 2woz_A           18 ILLVNDT--AAVAYDPMENECYLTALAEQIPRNHSSIVTQQNQVYVVGGLYVDEENKDQPLQSYFFQLDNVSSEWVG-LP   94 (318)
T ss_dssp             EEEECSS--EEEEEETTTTEEEEEEECTTSCSSEEEEECSSSCEEEEESSCC-------CCCBEEEEEETTTTEEEE-CS
T ss_pred             hhhcccc--ceEEECCCCCceecccCCccCCccceEEEEECCEEEEECCcccCccccCCCccccEEEEeCCCCcEEE-CC
Confidence            4555554  378898876653221 1110111122233456777777773    12       16778877664322 11


Q ss_pred             CCcc---cEEEEEECCCCCeEEEEecCC-------CeEEEEecCCcceeeeecCCCCCCCCCCccCCCCcceEEEEECCC
Q 021247          100 ASPS---EVWQMQFDPKGTTLAVAGGGS-------ASVKLWDTATWNLIATLSIPRPEGLKPTDKSSSKKFVLSVAWSPD  169 (315)
Q Consensus       100 ~~~~---~v~~~~~~~~~~~~~~~~~~d-------~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~  169 (315)
                      ..+.   .-..+.+  + ..+++.|+.+       ..+.+||..+.+....-..+.       ....+     +++. .+
T Consensus        95 ~~p~~r~~~~~~~~--~-~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~-------~r~~~-----~~~~-~~  158 (318)
T 2woz_A           95 PLPSARCLFGLGEV--D-DKIYVVAGKDLQTEASLDSVLCYDPVAAKWSEVKNLPI-------KVYGH-----NVIS-HN  158 (318)
T ss_dssp             CBSSCBCSCEEEEE--T-TEEEEEEEEBTTTCCEEEEEEEEETTTTEEEEECCCSS-------CEESC-----EEEE-ET
T ss_pred             CCCccccccceEEE--C-CEEEEEcCccCCCCcccceEEEEeCCCCCEeECCCCCC-------ccccc-----EEEE-EC
Confidence            1111   1112222  3 3455555543       357888887755443222111       11111     2222 35


Q ss_pred             CCEEEEecC------CCcEEEEEcccceeeee--ecCCccceEEEEEcCCCCcEEEEEeCC-----CeEEEEeCCCCeeE
Q 021247          170 GRRIACGSM------DGTISVFDVTRAKFLHH--LEGHFMPVRSLVYSPVDPRVLFSASDD-----THVHMYDAEGKSLV  236 (315)
Q Consensus       170 ~~~l~~~s~------dg~i~i~d~~~~~~~~~--~~~~~~~v~~~~~~~~~~~~l~s~~~d-----~~i~~wd~~~~~~~  236 (315)
                      ++.++.|+.      -..+.+||+.+.+....  +.........+.+   ++++++.|+.+     ..+.+||+++.+-.
T Consensus       159 ~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~---~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~  235 (318)
T 2woz_A          159 GMIYCLGGKTDDKKCTNRVFIYNPKKGDWKDLAPMKTPRSMFGVAIH---KGKIVIAGGVTEDGLSASVEAFDLKTNKWE  235 (318)
T ss_dssp             TEEEEECCEESSSCBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEE---TTEEEEEEEEETTEEEEEEEEEETTTCCEE
T ss_pred             CEEEEEcCCCCCCCccceEEEEcCCCCEEEECCCCCCCcccceEEEE---CCEEEEEcCcCCCCccceEEEEECCCCeEE
Confidence            666666653      23589999987765432  1111111122222   45677777643     34778998765322


Q ss_pred             E--EeecccccEEEEEEcCCCCeEEEEeCC--------------CcEEEEecCcc
Q 021247          237 T--AMSGHASWVLSVDASPDGAAITTGSSD--------------RTVKLWDLNMR  275 (315)
Q Consensus       237 ~--~~~~~~~~i~~~~~~~~~~~l~s~~~d--------------~~i~iwd~~~~  275 (315)
                      .  .+....... ++. ..++++++.|+.+              ..+.+||+.+.
T Consensus       236 ~~~~~p~~r~~~-~~~-~~~~~i~v~GG~~~~~~~~~~~~~~~~~~v~~yd~~~~  288 (318)
T 2woz_A          236 VMTEFPQERSSI-SLV-SLAGSLYAIGGFAMIQLESKEFAPTEVNDIWKYEDDKK  288 (318)
T ss_dssp             ECCCCSSCCBSC-EEE-EETTEEEEECCBCCBC----CCBCCBCCCEEEEETTTT
T ss_pred             ECCCCCCcccce-EEE-EECCEEEEECCeeccCCCCceeccceeeeEEEEeCCCC
Confidence            1  111111111 111 2246677777654              34677777653

>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A

Probab=96.78  E-value=0.12  Score=43.78  Aligned_cols=139  Identities=16%  Similarity=0.191  Sum_probs=86.6

Q ss_pred             CCCCEEEEecCCCcEEEEEcccceeeeeecCC----ccceEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCe---------
Q 021247          168 PDGRRIACGSMDGTISVFDVTRAKFLHHLEGH----FMPVRSLVYSPVDPRVLFSASDDTHVHMYDAEGKS---------  234 (315)
Q Consensus       168 ~~~~~l~~~s~dg~i~i~d~~~~~~~~~~~~~----~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~---------  234 (315)
                      .+|..++.. .++.||..++......+.+...    ...+..+..+| .+.+|+..+ +..|.|-.+..+.         
T Consensus        30 ~n~t~i~~a-~~n~iR~~~i~~~~~Yk~L~~~~~i~f~~i~qlvlSp-sG~lLAl~g-~~~V~Vv~LP~~~~~~~~~~~~  106 (452)
T 3pbp_A           30 QNGTRIVFI-QDNIIRWYNVLTDSLYHSLNFSRHLVLDDTFHVISST-SGDLLCLFN-DNEIFVMEVPWGYSNVEDVSIQ  106 (452)
T ss_dssp             TTTTEEEEE-ETTEEEEEETTTCSSCEEEECTTTCCCCTTCEEEECT-TSSEEEEEC-SSEEEEEECCTTCSCCCCHHHH
T ss_pred             cCCCEEEEE-ECCEEEEEECCCCCcceEEecCcccccCceeEEEECC-CCCEEEEec-CCeEEEEEecCccccCcccccc
Confidence            345555444 3478888887644434444332    22577888898 555665554 4578887765211         


Q ss_pred             ---eEEEeec------ccccEEEEEEcCC---CCeEEEEeCCCcEEEEecCccc--eehcc---------cccccceEEE
Q 021247          235 ---LVTAMSG------HASWVLSVDASPD---GAAITTGSSDRTVKLWDLNMRA--AMQSM---------TNHTDQVWGV  291 (315)
Q Consensus       235 ---~~~~~~~------~~~~i~~~~~~~~---~~~l~s~~~d~~i~iwd~~~~~--~~~~~---------~~~~~~v~~~  291 (315)
                         ..+.+.-      ....|..+.|+|-   +..|++=..|+.||+||+....  +. .+         ......|.++
T Consensus       107 ~~~q~~ty~l~~~~~~~~s~I~qVlWHPl~~~ds~LVVLtsD~~Ir~yDl~~s~~~P~-~L~k~~~~fg~d~~~~ev~S~  185 (452)
T 3pbp_A          107 DAFQIFHYSIDEEEVGPKSSIKKVLFHPKSYRDSCIVVLKEDDTITMFDILNSQEKPI-VLNKPNNSFGLDARVNDITDL  185 (452)
T ss_dssp             HTTEEEEEEGGGCC--CCCCEEEEEECTTBGGGCEEEEEETTSCEEEEETTCTTSCCE-EESCCCSEEESCSSCCCEEEE
T ss_pred             cccceeEEEcCCcccCCCCceeEEEeccccCCCCeEEEEecCCEEEEEEcccCCCCCc-chhccccccCCCcccceEEEE
Confidence               1112221      2467999999994   5688999999999999998521  11 11         1122578899


Q ss_pred             EEeeCCCEEEEEe--CCCcEE
Q 021247          292 SFRPLGGRVVSVS--DDKSIS  310 (315)
Q Consensus       292 ~~s~~~~~l~s~~--~d~~i~  310 (315)
                      +|..++-.|...+  ..|.|.
T Consensus       186 ~Fg~~~lTLYvl~~t~~GDIY  206 (452)
T 3pbp_A          186 EFSKDGLTLYCLNTTEGGDIF  206 (452)
T ss_dssp             EECTTSSCEEEEECTTSCEEE
T ss_pred             EEcCCCcEEEEEecCCCCCEE
Confidence            9999876666644  667664

>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A

Probab=96.70  E-value=0.24  Score=42.76  Aligned_cols=103  Identities=14%  Similarity=0.198  Sum_probs=61.6

Q ss_pred             eEEEEECCCCCEEEEecCCCcEEEEEccccee--eeeecC------CccceEEEEEcCC---CCcEEEEEeC--------
Q 021247          161 VLSVAWSPDGRRIACGSMDGTISVFDVTRAKF--LHHLEG------HFMPVRSLVYSPV---DPRVLFSASD--------  221 (315)
Q Consensus       161 i~~~~~~~~~~~l~~~s~dg~i~i~d~~~~~~--~~~~~~------~~~~v~~~~~~~~---~~~~l~s~~~--------  221 (315)
                      ...|+|.|+|+++++-...+.|++++...++.  +..+..      .......++|+|+   ++.+.++-+.        
T Consensus        29 P~~~a~~pdG~l~V~e~~gg~I~~~~~~~g~~~~~~~~~~~~~~~~g~~Gllgia~~Pdf~~~g~lYv~~s~~~~~~~~~  108 (454)
T 1cru_A           29 PHALLWGPDNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIYISGTFKNPKSTDK  108 (454)
T ss_dssp             EEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTTTTTSCEEEEEEEEECTTC--C
T ss_pred             ceEEEEcCCCcEEEEEcCCCEEEEEECCCCcEeEEecCCccccccCCCCceeEEEECCCcCcCCEEEEEEeccccCCCcc
Confidence            57999999999777765555798887654433  222221      2345678999985   5656555542        


Q ss_pred             ----CCeEEEEeCCCC-------e-eEEEee-cccccEEEEEEcCCCCeEEEEeC
Q 021247          222 ----DTHVHMYDAEGK-------S-LVTAMS-GHASWVLSVDASPDGAAITTGSS  263 (315)
Q Consensus       222 ----d~~i~~wd~~~~-------~-~~~~~~-~~~~~i~~~~~~~~~~~l~s~~~  263 (315)
                          ...|..|+....       + ++..+. ........+.|.|+|.+.++.+.
T Consensus       109 ~~~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~H~~~~l~f~pDG~Lyv~~Gd  163 (454)
T 1cru_A          109 ELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPSSKDHQSGRLVIGPDQKIYYTIGD  163 (454)
T ss_dssp             CSCEEEEEEEEEEETTTTEEEEEEEEEEEECCCSSCCEEEEEECTTSCEEEEECC
T ss_pred             ccccccEEEEEEECCCCCCcCCcEEEEEcCCCCCCCCCCeEeECCCCeEEEEECC
Confidence                235666654321       1 111122 11224678999999987766543

>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A

Probab=96.63  E-value=0.6  Score=45.83  Aligned_cols=251  Identities=10%  Similarity=0.171  Sum_probs=137.7

Q ss_pred             CcEEEEcCCCCcceeeccccccceEEEEeCCCCCEEEEeeCCCeEEEEECCCCceeEEeeCCcccEEEEEECCCCCeEEE
Q 021247           40 ETVKLWRPDDMQLERTNTGHCLGVVSVAAHPSGIIAASASLDSFVRVFDVDTNASIATLEASPSEVWQMQFDPKGTTLAV  119 (315)
Q Consensus        40 ~~v~~w~~~~~~~~~~~~~h~~~v~~~~~~~~g~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~  119 (315)
                      .+|.|-|+.++......+   ...-+.-.+|..+.++--+ ..+++++|+++.+.+..... +.+|.--+|-.... +.+
T Consensus        48 ~~vvIidl~~~~~~~rrp---i~AdsAIMnP~~~iiALra-g~~lQiFnl~~k~klks~~~-~e~VvfWkWis~~~-l~l  121 (1630)
T 1xi4_A           48 AQVVIIDMNDPSNPIRRP---ISADSAIMNPASKVIALKA-GKTLQIFNIEMKSKMKAHTM-TDDVTFWKWISLNT-VAL  121 (1630)
T ss_pred             ceEEEEECCCCCCccccc---ccchhhccCCCcceEEEec-CCeEEEeehHHhhhhccccc-CCCceEEEecCCCe-eEE
Confidence            367777766543221111   1112334577777666443 67899999998887776654 34566667754433 333


Q ss_pred             EecCCCeEEEEecCCcc-eeeeecCCCCCCCCCCccCCCCcceEEEEECCCCCEEEEec-------CCCcEEEEEcccce
Q 021247          120 AGGGSASVKLWDTATWN-LIATLSIPRPEGLKPTDKSSSKKFVLSVAWSPDGRRIACGS-------MDGTISVFDVTRAK  191 (315)
Q Consensus       120 ~~~~d~~i~~~d~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~s-------~dg~i~i~d~~~~~  191 (315)
                      .  .+..|.-|++.... +...+.  +...       .....|..-..+++.+|++..+       ..|.+.+|..+.+.
T Consensus       122 V--T~~aVyHW~~~~~s~P~k~fd--R~~~-------L~~~QIinY~~d~~~kW~~l~gi~~~~~~v~G~mQLyS~er~~  190 (1630)
T 1xi4_A          122 V--TDNAVYHWSMEGESQPVKMFD--RHSS-------LAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKV  190 (1630)
T ss_pred             E--cCCeEEEeccCCCCccHHHHh--cchh-------cccCeeEEeeeCCCCCeEEEEeeccCCCcccceeeeeeccccc
Confidence            3  24689999986411 111111  1100       1124477788888999876433       35778889876433


Q ss_pred             eeeeecCCccceEEEEEc--CCCCcEEEEEeC---CCeEEEEeCCCC-----eeE-E---E-ee--cccccEEEEEEcCC
Q 021247          192 FLHHLEGHFMPVRSLVYS--PVDPRVLFSASD---DTHVHMYDAEGK-----SLV-T---A-MS--GHASWVLSVDASPD  254 (315)
Q Consensus       192 ~~~~~~~~~~~v~~~~~~--~~~~~~l~s~~~---d~~i~~wd~~~~-----~~~-~---~-~~--~~~~~i~~~~~~~~  254 (315)
                       .+.+.||......+...  +....++..+..   .+++++-++...     ... +   . +.  .-.+...++..++.
T Consensus       191 -sQ~iegha~~F~~~~~~~~~~~~~l~~f~~~~~~g~kLhi~Ei~~~~~~~~~f~kk~~~~~~~~~~~~Dfpv~~~vs~k  269 (1630)
T 1xi4_A          191 -SQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEK  269 (1630)
T ss_pred             -chhhhHhHhhhheeccCCCCCCceEEEEEEecCCCceEEEEecCCCccCCCCCccccccccCCcccccCcceEEEeccc
Confidence             34455665544443332  112223332222   268888887432     110 0   0 11  12344557778887


Q ss_pred             CCeEEEEeCCCcEEEEecCccceehcccccccceEEEEEeeCCCEEEEEeCCCc
Q 021247          255 GAAITTGSSDRTVKLWDLNMRAAMQSMTNHTDQVWGVSFRPLGGRVVSVSDDKS  308 (315)
Q Consensus       255 ~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~  308 (315)
                      -..+..-+.-|.|.++|+.++..+..-.--.+.|.-.+-+...+=++.....|.
T Consensus       270 ~g~iy~itk~G~~~~~d~~t~~~i~~~ris~~~iF~~~~~~~~~g~~~vnr~G~  323 (1630)
T 1xi4_A          270 HDVVFLITKYGYIHLYDLETGTCIYMNRISGETIFVTAPHEATAGIIGVNRKGQ  323 (1630)
T ss_pred             cCEEEEEecCceEEEEecccchhhhhccccCCceEEeccCCCCCceEEEcCCce
Confidence            778888899999999999998776543333344443333333223333334443

>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}

Probab=96.61  E-value=0.078  Score=43.96  Aligned_cols=61  Identities=10%  Similarity=-0.012  Sum_probs=31.2

Q ss_pred             EEEEeeC-CCcEEEEcCCC--Ccc--eeecc-ccccceEEEEeCCCCCEEEEeeC-C---------CeEEEEECCCCce
Q 021247           32 LLLTGSL-DETVKLWRPDD--MQL--ERTNT-GHCLGVVSVAAHPSGIIAASASL-D---------SFVRVFDVDTNAS   94 (315)
Q Consensus        32 ~l~sgs~-d~~v~~w~~~~--~~~--~~~~~-~h~~~v~~~~~~~~g~~l~s~~~-d---------~~i~~w~~~~~~~   94 (315)
                      +++.|+. ...+..||+.+  .+-  ....+ .....-..+.+  ++.+++.|+. +         ..+.++|+.+.+-
T Consensus        22 iyv~GG~~~~~~~~~d~~~~~~~W~~~~~~p~~~R~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~~v~~yd~~~~~W   98 (357)
T 2uvk_A           22 VYIGLGSAGTAWYKLDTQAKDKKWTALAAFPGGPRDQATSAFI--DGNLYVFGGIGKNSEGLTQVFNDVHKYNPKTNSW   98 (357)
T ss_dssp             EEEECGGGTTCEEEEETTSSSCCEEECCCCTTCCCBSCEEEEE--TTEEEEECCEEECTTSCEEECCCEEEEETTTTEE
T ss_pred             EEEEeCcCCCeEEEEccccCCCCeeECCCCCCCcCccceEEEE--CCEEEEEcCCCCCCCccceeeccEEEEeCCCCcE
Confidence            5566654 35688888753  221  11112 11111112222  5667777765 2         4588889887653

>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A

Probab=96.54  E-value=0.3  Score=41.31  Aligned_cols=162  Identities=12%  Similarity=0.187  Sum_probs=94.2

Q ss_pred             CCCCCEEEEeeCCCeEEEEECCCCceeEEeeCC----cccEEEEEECCCCCeEEEEecCCCeEEEEecCCcceeeeecCC
Q 021247           69 HPSGIIAASASLDSFVRVFDVDTNASIATLEAS----PSEVWQMQFDPKGTTLAVAGGGSASVKLWDTATWNLIATLSIP  144 (315)
Q Consensus        69 ~~~g~~l~s~~~d~~i~~w~~~~~~~~~~~~~~----~~~v~~~~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~  144 (315)
                      ..+|..++.+- ++.||.-++.++..-+.+...    -..+..+..+|+|.++++.|  +.+|.|-.+.....       
T Consensus        29 ~~n~t~i~~a~-~n~iR~~~i~~~~~Yk~L~~~~~i~f~~i~qlvlSpsG~lLAl~g--~~~V~Vv~LP~~~~-------   98 (452)
T 3pbp_A           29 SQNGTRIVFIQ-DNIIRWYNVLTDSLYHSLNFSRHLVLDDTFHVISSTSGDLLCLFN--DNEIFVMEVPWGYS-------   98 (452)
T ss_dssp             ETTTTEEEEEE-TTEEEEEETTTCSSCEEEECTTTCCCCTTCEEEECTTSSEEEEEC--SSEEEEEECCTTCS-------
T ss_pred             EcCCCEEEEEE-CCEEEEEECCCCCcceEEecCcccccCceeEEEECCCCCEEEEec--CCeEEEEEecCccc-------
Confidence            34555554433 467887787755444444432    23567788999999887764  45666665531000       


Q ss_pred             CCCCCCCCccCCCCcceEEEEECCCCCEEEEecCCCcEEEEEcccceeeeeecCCccceEEEEEcCCC--CcEEEEEeCC
Q 021247          145 RPEGLKPTDKSSSKKFVLSVAWSPDGRRIACGSMDGTISVFDVTRAKFLHHLEGHFMPVRSLVYSPVD--PRVLFSASDD  222 (315)
Q Consensus       145 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~s~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~--~~~l~s~~~d  222 (315)
                                 .           +.+..+   ..-=.++.|.+...+     .....+|..+.|+|..  +..|++-..|
T Consensus        99 -----------~-----------~~~~~~---~~~~q~~ty~l~~~~-----~~~~s~I~qVlWHPl~~~ds~LVVLtsD  148 (452)
T 3pbp_A           99 -----------N-----------VEDVSI---QDAFQIFHYSIDEEE-----VGPKSSIKKVLFHPKSYRDSCIVVLKED  148 (452)
T ss_dssp             -----------C-----------CCCHHH---HHTTEEEEEEGGGCC-------CCCCEEEEEECTTBGGGCEEEEEETT
T ss_pred             -----------c-----------Cccccc---ccccceeEEEcCCcc-----cCCCCceeEEEeccccCCCCeEEEEecC
Confidence                       0           000000   000124445553211     1135689999999963  4489999999


Q ss_pred             CeEEEEeCCCCe-eEEEe---------ecccccEEEEEEcCCCCeEEEEe--CCCcEEEE
Q 021247          223 THVHMYDAEGKS-LVTAM---------SGHASWVLSVDASPDGAAITTGS--SDRTVKLW  270 (315)
Q Consensus       223 ~~i~~wd~~~~~-~~~~~---------~~~~~~i~~~~~~~~~~~l~s~~--~d~~i~iw  270 (315)
                      +.|++||+.... ....+         ......|.+++|.+++-.|....  .+|.|+-.
T Consensus       149 ~~Ir~yDl~~s~~~P~~L~k~~~~fg~d~~~~ev~S~~Fg~~~lTLYvl~~t~~GDIYAl  208 (452)
T 3pbp_A          149 DTITMFDILNSQEKPIVLNKPNNSFGLDARVNDITDLEFSKDGLTLYCLNTTEGGDIFAF  208 (452)
T ss_dssp             SCEEEEETTCTTSCCEEESCCCSEEESCSSCCCEEEEEECTTSSCEEEEECTTSCEEEEE
T ss_pred             CEEEEEEcccCCCCCcchhccccccCCCcccceEEEEEEcCCCcEEEEEecCCCCCEEEE
Confidence            999999987521 10112         12235688999999887776644  88888654

>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale}

Probab=96.49  E-value=0.26  Score=39.95  Aligned_cols=186  Identities=9%  Similarity=0.075  Sum_probs=95.9

Q ss_pred             CCeEEEEECCCCceeEEeeCCcccEEEEEECCCCCeEEEEecCC-------------CeEEEEecCCcceeeeecCCCCC
Q 021247           81 DSFVRVFDVDTNASIATLEASPSEVWQMQFDPKGTTLAVAGGGS-------------ASVKLWDTATWNLIATLSIPRPE  147 (315)
Q Consensus        81 d~~i~~w~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d-------------~~i~~~d~~~~~~~~~~~~~~~~  147 (315)
                      ++.|...+...... ..+..  ..  +--+++++..++.+...+             ..|+..++...+......     
T Consensus        36 ~~~ly~~~~dg~~~-~~l~~--~~--~~~i~~~g~~Iyy~~~~~~~~~~~~~~~~n~~~Iy~i~~dg~~~~~l~~-----  105 (302)
T 3s25_A           36 NGRLYAMNIDGSNI-HKLSN--DT--AMYINADKNYVYYVRNNNQKITSQTFFSYDRNSLCRIKRNGHGSTVLDP-----  105 (302)
T ss_dssp             TTEEEEEETTSCSC-EEEEE--EE--EEEEEECSSEEEEEEECC------CCSSCCSEEEEEEETTSCCCEEEEC-----
T ss_pred             CceEEEEcCCCCCC-EEccC--Cc--eeeEEEcCCEEEEEECCCCcccccceeccCCCeEEEEeCCCCcceEeec-----
Confidence            45566666544332 22221  11  234577888887776543             345656655433211110     


Q ss_pred             CCCCCccCCCCcceEEEEECCCCCEEEEec----CCCcEEEEEcccceeeeeecCCccceEEEEEcCCCCcEEEEEeCCC
Q 021247          148 GLKPTDKSSSKKFVLSVAWSPDGRRIACGS----MDGTISVFDVTRAKFLHHLEGHFMPVRSLVYSPVDPRVLFSASDDT  223 (315)
Q Consensus       148 ~~~~~~~~~~~~~i~~~~~~~~~~~l~~~s----~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~  223 (315)
                                   -.+..|++++++|+-..    .+..|+..++.... ...+..+..    ..++|.+..+..+.....
T Consensus       106 -------------~~~~~~s~~g~~Iy~~~~~~~~~~~Iy~~~~dGs~-~~~lt~~~~----~~~~~~g~~iy~t~~g~~  167 (302)
T 3s25_A          106 -------------DPCIYASLIGNYIYYLHYDTQTATSLYRIRIDGEE-KKKIKNHYL----FTCNTSDRYFYYNNPKNG  167 (302)
T ss_dssp             -------------SCEEEEEEETTEEEEEEESSSSCEEEEEEETTSCC-CEEEESSCC----CCSEEETTEEEEECTTTC
T ss_pred             -------------CCccEEEEeCCEEEEEeecCCCCceEEEEECCCCC-eEEEeCCCc----eEeeEECCEEEEEeCCCc
Confidence                         11346777888876543    34456666765332 333433322    345565666666665567


Q ss_pred             eEEEEeCCCCeeEEEeecccccEEEEEEcCCCCeEEEEeCC--CcEEEEecCccceehcccccccceEEEEEeeCCCEEE
Q 021247          224 HVHMYDAEGKSLVTAMSGHASWVLSVDASPDGAAITTGSSD--RTVKLWDLNMRAAMQSMTNHTDQVWGVSFRPLGGRVV  301 (315)
Q Consensus       224 ~i~~wd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~d--~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~  301 (315)
                      .|.+-++.++.......+   ... ..+.|++.+|+=...+  ..|..-+++... ...+..  ..+  -.|+|++.+|.
T Consensus       168 ~Iy~~~l~g~~~~~l~~~---~~~-~~~~P~g~~iy~t~~~~~~~I~~~~ldG~~-~~~Lt~--~~~--~~~~~~g~~Iy  238 (302)
T 3s25_A          168 QLYRYDTASQSEALFYDC---NCY-KPVVLDDTNVYYMDVNRDNAIVHVNINNPN-PVVLTE--ANI--EHYNVYGSLIF  238 (302)
T ss_dssp             CEEEEETTTTEEEEEECS---CEE-EEEEEETTEEEEEEGGGTTEEEEECSSSCC-CEECSC--SCE--EEEEEETTEEE
T ss_pred             eEEEEECCCCCEEEEeCC---Ccc-ceeeecCCEEEEEEcCCCcEEEEEECCCCC-eEEEeC--CCc--ceEEECCCEEE
Confidence            888888877654333322   122 2356888776554433  245555555433 222221  222  24778888776


Q ss_pred             EE
Q 021247          302 SV  303 (315)
Q Consensus       302 s~  303 (315)
                      -+
T Consensus       239 ~~  240 (302)
T 3s25_A          239 YQ  240 (302)
T ss_dssp             EE
T ss_pred             EE
Confidence            54

>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}

Probab=96.24  E-value=0.04  Score=45.37  Aligned_cols=124  Identities=12%  Similarity=0.122  Sum_probs=73.0

Q ss_pred             CEEEEeeCCCeEEEEECCCCceeEEeeCCc-ccEEEEEEC--CCCCeEEEEe-cCCCeEEEEecCCcceeeeecCCCCCC
Q 021247           73 IIAASASLDSFVRVFDVDTNASIATLEASP-SEVWQMQFD--PKGTTLAVAG-GGSASVKLWDTATWNLIATLSIPRPEG  148 (315)
Q Consensus        73 ~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~-~~v~~~~~~--~~~~~~~~~~-~~d~~i~~~d~~~~~~~~~~~~~~~~~  148 (315)
                      .+++.++.||.|+-+|..+++....++... .++....-.  +.+..+++.. ..||.+..+|..++.....+..+....
T Consensus        11 ~~V~v~t~dG~l~Ald~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~vv~p~~dG~l~a~~~~~G~~~~~~~~~~lv~   90 (339)
T 2be1_A           11 DILIAADVEGGLHAVDRRNGHIIWSIEPENFQPLIEIQEPSRLETYETLIIEPFGDGNIYYFNAHQGLQKLPLSIRQLVS   90 (339)
T ss_dssp             EEEEEEETTSCEEEEETTTTEEEEEECGGGSCCSEECCCSCTTTSSEEEEECCSTTTEEEEEETTTEEEEEEEEHHHHHT
T ss_pred             CEEEEEeCCCeEEEEECCCCcEEEEecCCccCCcEEecCCccccCCcEEEEEECCCCEEEEEECCCCcEEeeecccccee
Confidence            467788999999999999999888876541 222222111  1122344443 579999999988875554443321110


Q ss_pred             CCCCccCCCCcceE-EEEECCCCCEEEEecCCCcEEEEEcccceeeeeecC
Q 021247          149 LKPTDKSSSKKFVL-SVAWSPDGRRIACGSMDGTISVFDVTRAKFLHHLEG  198 (315)
Q Consensus       149 ~~~~~~~~~~~~i~-~~~~~~~~~~l~~~s~dg~i~i~d~~~~~~~~~~~~  198 (315)
                      ..|...  ...++. ..--...+..+++|+.+|.+...|+.+|+.+-.+..
T Consensus        91 ~SP~~~--~~~pvv~~~~~~~~~g~Vy~Gs~~g~l~ald~~tG~~~W~~~~  139 (339)
T 2be1_A           91 TSPLHL--KTNIVVNDSGKIVEDEKVYTGSMRTIMYTINMLNGEIISAFGP  139 (339)
T ss_dssp             TCSEEE--ECC----------CCEEEEECEEEEEEEEEETTTCCEEEEEST
T ss_pred             cccccc--CCCceeecccccccCCEEEEEecCCEEEEEECCCCcEEEEEec
Confidence            000000  000000 000001456889999999999999999998877653

>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*

Probab=96.19  E-value=0.44  Score=39.53  Aligned_cols=234  Identities=13%  Similarity=0.151  Sum_probs=118.2

Q ss_pred             cceEEEEEeecCCCCCcEEEEeeCCCcEEEEcCCCCcceeec---cccccceEEEEeCCC----CCEEEEeeC---C---
Q 021247           15 ESVWAVTWVPATETRPALLLTGSLDETVKLWRPDDMQLERTN---TGHCLGVVSVAAHPS----GIIAASASL---D---   81 (315)
Q Consensus        15 ~~v~~v~~~~~~~~~~~~l~sgs~d~~v~~w~~~~~~~~~~~---~~h~~~v~~~~~~~~----g~~l~s~~~---d---   81 (315)
                      ...++++|.|++.     |+.+..+|.|++++.+..+....+   .........++++|+    +.+.++-..   +   
T Consensus        29 ~~P~~ia~~pdG~-----l~V~e~~g~I~~~d~~G~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lyv~~~~~~~~~~~  103 (354)
T 3a9g_A           29 EVPWSIAPLGGGR-----YLVTERPGRLVLISPSGKKLVASFDVANVGEAGLLGLALHPEFPKKSWVYLYASYFAEGGHI  103 (354)
T ss_dssp             SCEEEEEEEETTE-----EEEEETTTEEEEECSSCEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEEECGGGCE
T ss_pred             CCCeEEEEcCCCe-----EEEEeCCCEEEEEeCCCceEeeccceeecCCCceeeEEeCCCCCcCCEEEEEEeccCCCCCc
Confidence            4578999999764     666677799999974322111111   112346789999997    555555442   3   


Q ss_pred             -CeEEEEECCCCc-----e--e-EEeeCC-cccEEEEEECCCCCeEEEEecCC-------------CeEEEEecCCccee
Q 021247           82 -SFVRVFDVDTNA-----S--I-ATLEAS-PSEVWQMQFDPKGTTLAVAGGGS-------------ASVKLWDTATWNLI  138 (315)
Q Consensus        82 -~~i~~w~~~~~~-----~--~-~~~~~~-~~~v~~~~~~~~~~~~~~~~~~d-------------~~i~~~d~~~~~~~  138 (315)
                       ..|..++.....     .  + ..+... ......+.|.|+|. ++++.+..             +.|.-++... +  
T Consensus       104 ~~~v~r~~~~~~~~~~~~~~~l~~~~~~~~~h~~~~l~~~pDG~-Lyvt~G~~~~~~~~~d~~~~~G~I~ri~~dG-~--  179 (354)
T 3a9g_A          104 RNRVIRGRLDGSTFKLKEVKTLIDGIPGAYIHNGGRIRFGPDGM-LYITTGDAADPRLAQDLSSLAGKILRVDEEG-R--  179 (354)
T ss_dssp             EEEEEEEEECSSSCCEEEEEEEEEEEECCSSCCCCCEEECTTSC-EEEECCCTTCGGGGTCTTCCSSEEEEECTTS-C--
T ss_pred             ceEEEEEEECCCCcCcCccEEEEEcCCCCCCcCCceEEECCCCc-EEEEECCCCCCccccCCCCCCeEEEEEcCCC-C--
Confidence             567777766541     1  1 112211 11235688999987 44443321             2333333321 0  


Q ss_pred             eeecCCCCCCC--CCCccCCCCcceEEEEECC-CCCEEEEecCCC---cEEEEEcccc----------------eeeeee
Q 021247          139 ATLSIPRPEGL--KPTDKSSSKKFVLSVAWSP-DGRRIACGSMDG---TISVFDVTRA----------------KFLHHL  196 (315)
Q Consensus       139 ~~~~~~~~~~~--~~~~~~~~~~~i~~~~~~~-~~~~l~~~s~dg---~i~i~d~~~~----------------~~~~~~  196 (315)
                          ++.....  .......+ .....++|+| +++.+++-....   .|.+......                ..+..+
T Consensus       180 ----~p~~npf~~~~i~a~G~-rnp~Gla~d~~~g~l~v~d~g~~~~dei~~i~~G~nyGwp~~~g~~~~~~~~~p~~~~  254 (354)
T 3a9g_A          180 ----PPADNPFPNSPIWSYGH-RNPQGIDWHRASGVMVATEHGPVGHDEVNIILKGGNYGWPLATGKAGRGEFVDPVIDT  254 (354)
T ss_dssp             ----CCTTSSSTTCCEEEECC-SCCCEEEECTTTCCEEEEECCSSSCCEEEEECTTCBCCTTTCCSCCCCTTSCCCSEEC
T ss_pred             ----CCCCCCCCCCcEEEEcc-CCcceEEEeCCCCCEEEEecCCCCCcEEEEecCCCcCCCCcccCCCCCCCCcCCEeec
Confidence                0000000  00000111 1245899999 566555433222   2433321110                111122


Q ss_pred             cCCccceEEEEEcC------CCCcEEEEEeCCCeEEEEeCCCC-eeE--EEe-ecccccEEEEEEcCCCCeEEEEe
Q 021247          197 EGHFMPVRSLVYSP------VDPRVLFSASDDTHVHMYDAEGK-SLV--TAM-SGHASWVLSVDASPDGAAITTGS  262 (315)
Q Consensus       197 ~~~~~~v~~~~~~~------~~~~~l~s~~~d~~i~~wd~~~~-~~~--~~~-~~~~~~i~~~~~~~~~~~l~s~~  262 (315)
                      .........+.|..      .++.++++.-..+.|...+++.. ...  ..+ .+....+..+++.|+|.+.++..
T Consensus       255 ~~~~~ap~G~~~y~g~~fp~~~G~l~v~~~~~~~v~~~~~~~~g~~~~~~~~~~~~~~rp~~v~~~pDG~lyv~~~  330 (354)
T 3a9g_A          255 GSETWAPSGASFVHGDMFPGLRGWLLIACLRGSMLAAVNFGDNMEVRKISTFFKNVFGRLRDVVIDDDGGILISTS  330 (354)
T ss_dssp             TTCCCCEEEEEECCSSSCGGGTTEEEEEETTTTEEEEEEECGGGCEEEEEEECTTTSCCEEEEEECTTSCEEEEEC
T ss_pred             CCCCcCCcceEEECCCCCcccCCcEEEEEcCCCEEEEEEECCCCcccceeeeccCCCCCeeEEEECCCCcEEEEEe
Confidence            11123456777731      35567777667788888887643 222  122 22245688999999987666543

>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}

Probab=96.05  E-value=0.5  Score=39.00  Aligned_cols=230  Identities=15%  Similarity=0.117  Sum_probs=119.9

Q ss_pred             ceEEEEeCCCCCEEEEeeCCCeEEEEECCCCcee--EEe----eCCcccEEEEEECCC---CCeEEEE--ecCCCeEEEE
Q 021247           62 GVVSVAAHPSGIIAASASLDSFVRVFDVDTNASI--ATL----EASPSEVWQMQFDPK---GTTLAVA--GGGSASVKLW  130 (315)
Q Consensus        62 ~v~~~~~~~~g~~l~s~~~d~~i~~w~~~~~~~~--~~~----~~~~~~v~~~~~~~~---~~~~~~~--~~~d~~i~~~  130 (315)
                      ....+++.|+|.++++--..|.|++++..++...  ..+    .........++++|+   +..++++  ...+..|.-|
T Consensus        33 ~P~~ia~~pdG~llVter~~G~I~~v~~~~g~~~~v~~~~~v~~~g~~GllGia~~Pdf~~~g~lYv~yt~~~~~~v~R~  112 (347)
T 3das_A           33 SPWGLAPLPGGDLLVSSRDEATITRVDAKTGRKTELGEVPGVSPSGEGGLLGIALSPDYASDHMVYAYFTSASDNRIVRM  112 (347)
T ss_dssp             SEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCBTTBSEEEEEECTTHHHHCEEEEEEECSSSEEEEEE
T ss_pred             CceEEEEcCCCcEEEEEecCCEEEEEECCCCcEeeecccCceeecCCCCceeeEeccccccCCEEEEEEecCCCCEEEEE
Confidence            4678999999998887655899999986655432  111    112345789999995   4445443  2233445545


Q ss_pred             ecCCcc-----e--eee-e-cCCCCCCCCCCccCCCCcceEEEEECCCCCEEEEec-------------CCCcEEEEEcc
Q 021247          131 DTATWN-----L--IAT-L-SIPRPEGLKPTDKSSSKKFVLSVAWSPDGRRIACGS-------------MDGTISVFDVT  188 (315)
Q Consensus       131 d~~~~~-----~--~~~-~-~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~s-------------~dg~i~i~d~~  188 (315)
                      .....+     .  ... + .++.          .....-..|.|.|+|.+.++.+             ..|.|.-++..
T Consensus       113 ~~~~~~~~~~~~~~~~~i~~~~p~----------~~~H~g~~l~fgpDG~Lyvt~Gd~~~~~~~qd~~~~~G~IlRi~~d  182 (347)
T 3das_A          113 LYDEKKPSGEQLGAPDTVFRGIPK----------GVIHNGGRIAFGPDKMLYAGTGESGDTGLSQDRKSLGGKILRMTPD  182 (347)
T ss_dssp             EBCTTSCTTCCBCCCEEEEEEECC----------CSSCCCCCEEECTTSCEEEECBCTTCGGGTTCTTCSTTCEEEECTT
T ss_pred             EeCCCCcccccCCCcEEEEEcCCC----------CCCccCccccCCCCCCEEEEECCCCCCccccCCCCCCCEEEEEeCC
Confidence            443311     0  000 0 0110          1122345799999998766643             23556555554


Q ss_pred             cc--------eeeeeecCCccceEEEEEcCCCCcEEEEE-eCCC--eEEEEeCC--------CC--------eeEEEeec
Q 021247          189 RA--------KFLHHLEGHFMPVRSLVYSPVDPRVLFSA-SDDT--HVHMYDAE--------GK--------SLVTAMSG  241 (315)
Q Consensus       189 ~~--------~~~~~~~~~~~~v~~~~~~~~~~~~l~s~-~~d~--~i~~wd~~--------~~--------~~~~~~~~  241 (315)
                      ..        ....--.+|. ....++|+| ++.++++- +.|+  .|.+...-        .+        ..+..+..
T Consensus       183 G~ip~~nPf~~~~i~a~G~R-Np~Gla~dp-~G~L~~~d~g~~~~deln~i~~G~nyGwP~~~g~~~~~~~~~P~~~~~~  260 (347)
T 3das_A          183 GEPAPGNPFPGSPVYSYGHR-NVQGLAWDD-KQRLFASEFGQDTWDELNAIKPGDNYGWPEAEGKGGGSGFHDPVAQWST  260 (347)
T ss_dssp             SSBCTTCSSTTCCEEEBCCS-BCCEEEECT-TCCEEEEECCSSSCEEEEEECTTCBCCTTTCCSSCCCTTCCCCSEEECT
T ss_pred             CCccCCCCCCCCeEEeeCCC-CcceEEECC-CCCEEEEecCCCCCceeeEEcCCCEecCCcccCCCCCccccCCcEecCC
Confidence            22        0001112343 345788998 45555443 2232  23222110        00        01112222


Q ss_pred             ccccEEEEEEcCCCCeEEEEeCCCcEEEEecCcccee----hcccccccceEEEEEeeCCCEEEEEe
Q 021247          242 HASWVLSVDASPDGAAITTGSSDRTVKLWDLNMRAAM----QSMTNHTDQVWGVSFRPLGGRVVSVS  304 (315)
Q Consensus       242 ~~~~i~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~----~~~~~~~~~v~~~~~s~~~~~l~s~~  304 (315)
                      +......++|- ++.++...-..+.|....+......    ..+.+....+..|+..|||..+++..
T Consensus       261 ~~~ap~G~~~~-~g~~~~~~l~~~~l~~v~~~~~~~~~~~e~~l~~~~gR~~dv~~~pDG~lyv~td  326 (347)
T 3das_A          261 DEASPSGIAYA-EGSVWMAGLRGERLWRIPLKGTAAAADPQAFLEGEYGRLRTVAPAGGDKLWLVTS  326 (347)
T ss_dssp             TTCCEEEEEEE-TTEEEEEESTTCSEEEEEEETTEESSCCEEESTTTSSCEEEEEEEETTEEEEEEC
T ss_pred             CCCCCcceEEE-cCceeeccccCCEEEEEEecCCceecceEEeecCCCCCccEEEECCCCcEEEEEc
Confidence            22345667776 4555555555566666666543221    11233346789999999998766644

>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}

Probab=96.05  E-value=0.081  Score=43.86  Aligned_cols=49  Identities=10%  Similarity=0.013  Sum_probs=25.2

Q ss_pred             CcEEEEEcccceeeee--ecCCccceEEEEEcCCCCcEEEEEeC------CCeEEEEeC
Q 021247          180 GTISVFDVTRAKFLHH--LEGHFMPVRSLVYSPVDPRVLFSASD------DTHVHMYDA  230 (315)
Q Consensus       180 g~i~i~d~~~~~~~~~--~~~~~~~v~~~~~~~~~~~~l~s~~~------d~~i~~wd~  230 (315)
                      ..+.+||+.+.+....  +......-.++...  ++++++.|+.      ...+..||+
T Consensus       168 ~~v~~yd~~~~~W~~~~~~p~~~~~~~~~~~~--~~~iyv~GG~~~~~~~~~~v~~~d~  224 (357)
T 2uvk_A          168 KFLLSFDPSTQQWSYAGESPWYGTAGAAVVNK--GDKTWLINGEAKPGLRTDAVFELDF  224 (357)
T ss_dssp             CEEEEEETTTTEEEEEEECSSCCCBSCEEEEE--TTEEEEECCEEETTEECCCEEEEEC
T ss_pred             ccEEEEeCCCCcEEECCCCCCCCcccccEEEE--CCEEEEEeeecCCCcccCceEEEEe
Confidence            4789999987765432  21111110122222  4566666653      234677776

>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*

Probab=95.61  E-value=1.1  Score=41.08  Aligned_cols=192  Identities=9%  Similarity=0.066  Sum_probs=92.9

Q ss_pred             EEEEeeCC----CcEEEEcCCCCcceeec--------cccccceEEEEeCCCCCEEEEeeCCC------eEEEEECCCCc
Q 021247           32 LLLTGSLD----ETVKLWRPDDMQLERTN--------TGHCLGVVSVAAHPSGIIAASASLDS------FVRVFDVDTNA   93 (315)
Q Consensus        32 ~l~sgs~d----~~v~~w~~~~~~~~~~~--------~~h~~~v~~~~~~~~g~~l~s~~~d~------~i~~w~~~~~~   93 (315)
                      +++.||.+    ..+.+||+.+.+-....        +.....-..+.+..++.+++.||.++      .+.++|..+..
T Consensus       400 iyv~GG~~~~~~~~v~~yd~~~~~W~~~~~~~p~~~~p~~R~~hs~~~~~~~~~lyv~GG~~~~~~~~~dv~~yd~~t~~  479 (695)
T 2zwa_A          400 VFYMGGSNPYRVNEILQLSIHYDKIDMKNIEVSSSEVPVARMCHTFTTISRNNQLLLIGGRKAPHQGLSDNWIFDMKTRE  479 (695)
T ss_dssp             EEEECCBSSSBCCCEEEEEECSSCEEEEECCCCCSCCCCCCBSCEEEEETTTTEEEEECCBSSTTCBCCCCEEEETTTTE
T ss_pred             EEEECCCCCCCcCcEEEEECCCCeEEEeccCCCCCCCCccccceEEEEEccCCEEEEEcCCCCCCCccccEEEEeCCCCc
Confidence            56666643    35677776654322211        11111112223322677777777543      47788887754


Q ss_pred             eeEEeeCCccc--EEEEEECCCCCeEEEEecCCC--eEEEEecCCcceeeeecCCCCCCCCCCccCCCCcceEEEEECCC
Q 021247           94 SIATLEASPSE--VWQMQFDPKGTTLAVAGGGSA--SVKLWDTATWNLIATLSIPRPEGLKPTDKSSSKKFVLSVAWSPD  169 (315)
Q Consensus        94 ~~~~~~~~~~~--v~~~~~~~~~~~~~~~~~~d~--~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~  169 (315)
                      -... ...+.+  -.++..-.++. +++.|+.++  .+.+||..+.+....-..    +..+.....    ...+.+..+
T Consensus       480 W~~~-~~~p~~R~~h~~~~~~~~~-iyv~GG~~~~~~v~~yd~~t~~W~~~~~~----g~~p~~r~~----~~a~v~~~~  549 (695)
T 2zwa_A          480 WSMI-KSLSHTRFRHSACSLPDGN-VLILGGVTEGPAMLLYNVTEEIFKDVTPK----DEFFQNSLV----SAGLEFDPV  549 (695)
T ss_dssp             EEEC-CCCSBCCBSCEEEECTTSC-EEEECCBCSSCSEEEEETTTTEEEECCCS----SGGGGSCCB----SCEEEEETT
T ss_pred             EEEC-CCCCCCcccceEEEEcCCE-EEEECCCCCCCCEEEEECCCCceEEccCC----CCCCCcccc----eeEEEEeCC
Confidence            3221 111111  11222222444 555565443  689999887654322110    001111111    223555555


Q ss_pred             -CCEEEEecC--C-----CcEEEEEccccee-----eeeecC----CccceEEEEEcCCCCcEEEEEeC--------CCe
Q 021247          170 -GRRIACGSM--D-----GTISVFDVTRAKF-----LHHLEG----HFMPVRSLVYSPVDPRVLFSASD--------DTH  224 (315)
Q Consensus       170 -~~~l~~~s~--d-----g~i~i~d~~~~~~-----~~~~~~----~~~~v~~~~~~~~~~~~l~s~~~--------d~~  224 (315)
                       ++.++.|+.  +     ..+..||+.+.+.     ...+..    .......+.+.  ++.+++.|+.        ...
T Consensus       550 ~~~iyv~GG~~~~~~~~~~~v~~yd~~~~~w~~~~~W~~~~~~p~~~R~~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~  627 (695)
T 2zwa_A          550 SKQGIILGGGFMDQTTVSDKAIIFKYDAENATEPITVIKKLQHPLFQRYGSQIKYIT--PRKLLIVGGTSPSGLFDRTNS  627 (695)
T ss_dssp             TTEEEEECCBCTTSSCBCCEEEEEEECTTCSSCCEEEEEEEECGGGCCBSCEEEEEE--TTEEEEECCBCSSCCCCTTTS
T ss_pred             CCEEEEECCcCCCCCeeeCcEEEEEccCCccccceEEEEcCCCCCCCcccceEEEeC--CCEEEEECCccCCCCCCCCCe
Confidence             666677765  2     3589999987762     222211    11111222222  2667777774        245


Q ss_pred             EEEEeCCCCee
Q 021247          225 VHMYDAEGKSL  235 (315)
Q Consensus       225 i~~wd~~~~~~  235 (315)
                      +.+||..+.+-
T Consensus       628 v~~yd~~t~~W  638 (695)
T 2zwa_A          628 IISLDPLSETL  638 (695)
T ss_dssp             EEEEETTTTEE
T ss_pred             EEEEECCCCeE
Confidence            88999887643

>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*

Probab=95.53  E-value=1.4  Score=40.23  Aligned_cols=195  Identities=12%  Similarity=0.148  Sum_probs=98.9

Q ss_pred             CCCCEEEEeeCC----CeEEEEECCCCceeEEe-e------CCcccEEEEEECCCCCeEEEEecCC------CeEEEEec
Q 021247           70 PSGIIAASASLD----SFVRVFDVDTNASIATL-E------ASPSEVWQMQFDPKGTTLAVAGGGS------ASVKLWDT  132 (315)
Q Consensus        70 ~~g~~l~s~~~d----~~i~~w~~~~~~~~~~~-~------~~~~~v~~~~~~~~~~~~~~~~~~d------~~i~~~d~  132 (315)
                      .++.+++.||.+    ..+.++|..++.-...- .      ..+..-.++...+.+..+++.|+.+      ..+.+||.
T Consensus       396 ~~~~iyv~GG~~~~~~~~v~~yd~~~~~W~~~~~~~p~~~~p~~R~~hs~~~~~~~~~lyv~GG~~~~~~~~~dv~~yd~  475 (695)
T 2zwa_A          396 AGNDVFYMGGSNPYRVNEILQLSIHYDKIDMKNIEVSSSEVPVARMCHTFTTISRNNQLLLIGGRKAPHQGLSDNWIFDM  475 (695)
T ss_dssp             CSSCEEEECCBSSSBCCCEEEEEECSSCEEEEECCCCCSCCCCCCBSCEEEEETTTTEEEEECCBSSTTCBCCCCEEEET
T ss_pred             ECCEEEEECCCCCCCcCcEEEEECCCCeEEEeccCCCCCCCCccccceEEEEEccCCEEEEEcCCCCCCCccccEEEEeC
Confidence            456677777753    45888888876543322 1      0111111222222133455666533      35788888


Q ss_pred             CCcceeeeecCCCCCCCCCCccCCCCcceEEEEECCCCCEEEEecCCC--cEEEEEcccceeeeeec-----CCccceEE
Q 021247          133 ATWNLIATLSIPRPEGLKPTDKSSSKKFVLSVAWSPDGRRIACGSMDG--TISVFDVTRAKFLHHLE-----GHFMPVRS  205 (315)
Q Consensus       133 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~s~dg--~i~i~d~~~~~~~~~~~-----~~~~~v~~  205 (315)
                      .+.+....-..+.       ....     .+++.-.+++.++.|+.++  .+.+||+.+.+....-.     .......+
T Consensus       476 ~t~~W~~~~~~p~-------~R~~-----h~~~~~~~~~iyv~GG~~~~~~v~~yd~~t~~W~~~~~~g~~p~~r~~~~a  543 (695)
T 2zwa_A          476 KTREWSMIKSLSH-------TRFR-----HSACSLPDGNVLILGGVTEGPAMLLYNVTEEIFKDVTPKDEFFQNSLVSAG  543 (695)
T ss_dssp             TTTEEEECCCCSB-------CCBS-----CEEEECTTSCEEEECCBCSSCSEEEEETTTTEEEECCCSSGGGGSCCBSCE
T ss_pred             CCCcEEECCCCCC-------Cccc-----ceEEEEcCCEEEEECCCCCCCCEEEEECCCCceEEccCCCCCCCcccceeE
Confidence            7754433211111       1111     1333323677778877654  69999998876543221     11111223


Q ss_pred             EEEcCCCCcEEEEEeC--C-----CeEEEEeCCCCee-----EEEeecc--cc-cEEEEEEcCCCCeEEEEeC-------
Q 021247          206 LVYSPVDPRVLFSASD--D-----THVHMYDAEGKSL-----VTAMSGH--AS-WVLSVDASPDGAAITTGSS-------  263 (315)
Q Consensus       206 ~~~~~~~~~~l~s~~~--d-----~~i~~wd~~~~~~-----~~~~~~~--~~-~i~~~~~~~~~~~l~s~~~-------  263 (315)
                      +.+....+.+++.|+.  +     ..+.+||+.+.+-     ...+...  .. .-.++....++++++.||.       
T Consensus       544 ~v~~~~~~~iyv~GG~~~~~~~~~~~v~~yd~~~~~w~~~~~W~~~~~~p~~~R~~~~~~~~~~~~iyv~GG~~~~~~~~  623 (695)
T 2zwa_A          544 LEFDPVSKQGIILGGGFMDQTTVSDKAIIFKYDAENATEPITVIKKLQHPLFQRYGSQIKYITPRKLLIVGGTSPSGLFD  623 (695)
T ss_dssp             EEEETTTTEEEEECCBCTTSSCBCCEEEEEEECTTCSSCCEEEEEEEECGGGCCBSCEEEEEETTEEEEECCBCSSCCCC
T ss_pred             EEEeCCCCEEEEECCcCCCCCeeeCcEEEEEccCCccccceEEEEcCCCCCCCcccceEEEeCCCEEEEECCccCCCCCC
Confidence            4444433667777765  2     4588999876651     1111111  00 0012222333677777774       


Q ss_pred             -CCcEEEEecCccc
Q 021247          264 -DRTVKLWDLNMRA  276 (315)
Q Consensus       264 -d~~i~iwd~~~~~  276 (315)
                       ...|.+||..+..
T Consensus       624 ~~~~v~~yd~~t~~  637 (695)
T 2zwa_A          624 RTNSIISLDPLSET  637 (695)
T ss_dssp             TTTSEEEEETTTTE
T ss_pred             CCCeEEEEECCCCe
Confidence             3458899987643

>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*

Probab=95.30  E-value=0.7  Score=35.34  Aligned_cols=139  Identities=11%  Similarity=-0.003  Sum_probs=75.9

Q ss_pred             eEEEEECCCCCEEEEecCCCcEEEEEccccee------eeeec--CCccceEEEEEcCCCCcEEEEEeCCCeEEEEeCCC
Q 021247          161 VLSVAWSPDGRRIACGSMDGTISVFDVTRAKF------LHHLE--GHFMPVRSLVYSPVDPRVLFSASDDTHVHMYDAEG  232 (315)
Q Consensus       161 i~~~~~~~~~~~l~~~s~dg~i~i~d~~~~~~------~~~~~--~~~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~  232 (315)
                      +..++|+|+|.+.++  .+|.++-.+..+...      -..+-  +-+. ..++.|.| ++.+.++  .||.|+-++..+
T Consensus        43 ~~~laf~P~G~LYaV--~~G~Ly~~~~~t~~~~~W~~s~t~IG~~Gw~~-F~a~~fD~-~G~LYav--~dG~iyr~~pP~  116 (236)
T 1tl2_A           43 FKFLFLSPGGELYGV--LNDKIYKGTPPTHDNDNWMGRAKKIGNGGWNQ-FQFLFFDP-NGYLYAV--SKDKLYKASPPQ  116 (236)
T ss_dssp             CSEEEECTTSCEEEE--ETTEEEEESCCCSTTCCHHHHCEEEECSCGGG-CSEEEECT-TSCEEEE--ETTEEEEESCCC
T ss_pred             ceeEEECCCccEEEE--eCCeEEEECCCCCCcccccccccEeccccccc-ceEEEECC-CCCEEEe--CCCEEEEeCCCc
Confidence            668999998886666  677777777644111      11110  1111 46778887 5656655  559998887532


Q ss_pred             C--ee-----EEEeecccccEEEEEEcCCCCeEEEEeCCCcEEEEecCccce-----ehccc--ccccceEEEEEeeCCC
Q 021247          233 K--SL-----VTAMSGHASWVLSVDASPDGAAITTGSSDRTVKLWDLNMRAA-----MQSMT--NHTDQVWGVSFRPLGG  298 (315)
Q Consensus       233 ~--~~-----~~~~~~~~~~i~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~-----~~~~~--~~~~~v~~~~~s~~~~  298 (315)
                      .  ..     ...-...=..+..|.+.|+|.+.+..  |+.++-..-.....     ..+.-  .....-.-+.|.|+|.
T Consensus       117 ~~~~~Wl~~a~~vg~~gw~~~~~lff~p~G~Lyav~--dg~lyr~~~P~~~~~~wl~~~~~~g~~g~~~yr~l~f~~~G~  194 (236)
T 1tl2_A          117 SDTDNWIARATEVGSGGWSGFKFLFFHPNGYLYAVH--GQQFYKALPPVSNQDNWLARATKIGQGGWDTFKFLFFSSVGT  194 (236)
T ss_dssp             STTCCHHHHSEEEECSSGGGEEEEEECTTSCEEEEE--TTEEEEECCCSSTTCCHHHHCEEEESSSGGGEEEEEECTTSC
T ss_pred             CCCCceeccccEeccCCCCceEEEEECCCceEEEEe--CCcEEecCCCCCCCcccccccceeccCCcceEEEEEECCCCc
Confidence            1  10     00011112457899999999876665  77754332221110     01111  1223445577999886


Q ss_pred             EEEEEeCCCcE
Q 021247          299 RVVSVSDDKSI  309 (315)
Q Consensus       299 ~l~s~~~d~~i  309 (315)
                      ..+.-  ++.+
T Consensus       195 l~~v~--~g~~  203 (236)
T 1tl2_A          195 LFGVQ--GGKF  203 (236)
T ss_dssp             EEEEE--TTEE
T ss_pred             EEEEe--CCeE
Confidence            55444  6643

>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}

Probab=95.24  E-value=1.1  Score=37.14  Aligned_cols=238  Identities=16%  Similarity=0.192  Sum_probs=118.0

Q ss_pred             cceEEEEEeecCCCCCcEEEEeeCCCcEEEEcCCCCcceee---c----cccccceEEEEeCCC----CCEEEEeeC---
Q 021247           15 ESVWAVTWVPATETRPALLLTGSLDETVKLWRPDDMQLERT---N----TGHCLGVVSVAAHPS----GIIAASASL---   80 (315)
Q Consensus        15 ~~v~~v~~~~~~~~~~~~l~sgs~d~~v~~w~~~~~~~~~~---~----~~h~~~v~~~~~~~~----g~~l~s~~~---   80 (315)
                      ...++++|.|++..    ++.+...|.|++++.+. +....   .    .....+...++++|+    +.+.++-..   
T Consensus        18 ~~P~~i~~~pdG~~----l~V~e~~G~i~~~~~~g-~~~~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lYv~~~~~~~   92 (353)
T 2g8s_A           18 DHPWALAFLPDNHG----MLITLRGGELRHWQAGK-GLSAPLSGVPDVWAHGQGGLLDVVLAPDFAQSRRIWLSYSEVGD   92 (353)
T ss_dssp             SSEEEEEECSTTCC----EEEEETTTEEEEEETTT-EECCCCBSCCCCCCSTTCSEEEEEECTTHHHHCEEEEEEEEECS
T ss_pred             CCcEEEEEcCCCCE----EEEEeCCceEEEEeCCC-ceeeEecCCcccccCCCCCceeEEECCCCCCCCEEEEEEeCCCC
Confidence            45689999987641    55566789999997543 21111   1    112346789999995    555555333   


Q ss_pred             ----CCeEEEEECCCCc----eeEE-eeCCc------ccEEEEEECCCCCeEEEEecCC-------------CeEEEEec
Q 021247           81 ----DSFVRVFDVDTNA----SIAT-LEASP------SEVWQMQFDPKGTTLAVAGGGS-------------ASVKLWDT  132 (315)
Q Consensus        81 ----d~~i~~w~~~~~~----~~~~-~~~~~------~~v~~~~~~~~~~~~~~~~~~d-------------~~i~~~d~  132 (315)
                          ...|..+++....    .... +...+      .....+.|.|+|. ++++.++.             +.|.-+|.
T Consensus        93 ~g~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~~~h~~~~l~~~pdG~-Lyv~~Gd~~~~~~~q~~~~~~g~I~ri~~  171 (353)
T 2g8s_A           93 DGKAGTAVGYGRLSDDLSKVTDFRTVFRQMPKLSTGNHFGGRLVFDGKGY-LFIALGENNQRPTAQDLDKLQGKLVRLTD  171 (353)
T ss_dssp             SSCEEEEEEEEEECTTSSBEEEEEEEEECSSCCBSSSCCCCCEEECSSSE-EEEEECCTTCGGGGGCTTSCTTEEEEEET
T ss_pred             CCCceeEEEEEEECCCCCCCCceEEEEEECCCCCCCcccCccEEECCCCc-EEEEECCCCCCCccCCCCCCCeEEEEECC
Confidence                2346666665431    1111 11111      1235789999985 44443332             34444443


Q ss_pred             CCcceeeeecCCCCCCC------CCCccCCCCcceEEEEECC-CCCEEEEec-CCCcEEEEEccccee------------
Q 021247          133 ATWNLIATLSIPRPEGL------KPTDKSSSKKFVLSVAWSP-DGRRIACGS-MDGTISVFDVTRAKF------------  192 (315)
Q Consensus       133 ~~~~~~~~~~~~~~~~~------~~~~~~~~~~~i~~~~~~~-~~~~l~~~s-~dg~i~i~d~~~~~~------------  192 (315)
                      ...       ++....+      ..............++|+| +|+++++-. .++.=.+.-+..+..            
T Consensus       172 dG~-------~p~~npf~~~~~~~~~i~a~G~rnp~gl~~d~~~g~l~~~d~g~~~~dei~~i~~G~nyGwp~~~~~~~~  244 (353)
T 2g8s_A          172 QGE-------IPDDNPFIKESGVRAEIWSYGIRNPQGMAMNPWSNALWLNEHGPRGGDEINIPQKGKNYGWPLATWGINY  244 (353)
T ss_dssp             TSC-------CCTTCTTTTSTTSCTTEEEECCSEEEEEEEETTTTEEEEEEECSBSCEEEECCCTTCBCCTTTBCSSBCT
T ss_pred             CCC-------CCCCCCCcCCCCCCccEEEEcCcCccceEEECCCCCEEEEecCCCCCcEEeEeccCCcCCCCCccCCCCC
Confidence            321       0000000      0000000112256899999 555444322 221111211111110            


Q ss_pred             -------------------eeeecCCccceEEEEEcC------CCCcEEEEEeCCCeEEEEeCCCCeeEEE--e-ecccc
Q 021247          193 -------------------LHHLEGHFMPVRSLVYSP------VDPRVLFSASDDTHVHMYDAEGKSLVTA--M-SGHAS  244 (315)
Q Consensus       193 -------------------~~~~~~~~~~v~~~~~~~------~~~~~l~s~~~d~~i~~wd~~~~~~~~~--~-~~~~~  244 (315)
                                         +..+. +...+..+.|.+      .++.++++.-..+.|...+++.+.....  + .....
T Consensus       245 ~~~~~~~~~~~~~~~~~~P~~~~~-~~~ap~G~~~y~g~~fp~~~g~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~  323 (353)
T 2g8s_A          245 SGFKIPEAKGEIVAGTEQPVFYWK-DSPAVSGMAFYNSDKFPQWQQKLFIGALKDKDVIVMSVNGDKVTEDGRILTDRGQ  323 (353)
T ss_dssp             TSSCCTTCCBSSCTTSCCCSEEES-SCCCEEEEEEECCSSSGGGTTEEEEEETTTTEEEEEEEETTEEEEEEEESGGGCC
T ss_pred             CCCccCcccCCCCCCccCCeEEeC-CCcCcceeEEECCccCcccCCcEEEEEccCCEEEEEEeCCCeEeeeEEcccCCCC
Confidence                               11111 122456677753      2356777766778888877765543322  1 12234


Q ss_pred             cEEEEEEcCCCCeEEEEe-CCCc
Q 021247          245 WVLSVDASPDGAAITTGS-SDRT  266 (315)
Q Consensus       245 ~i~~~~~~~~~~~l~s~~-~d~~  266 (315)
                      .+..+++.|+|.+.++.. .+|.
T Consensus       324 rp~~v~~~pdG~lyv~td~~~g~  346 (353)
T 2g8s_A          324 RIRDVRTGPDGYLYVLTDESSGE  346 (353)
T ss_dssp             CEEEEEECTTSCEEEEECSTTEE
T ss_pred             ceeEEEECCCCcEEEEEeCCCCE
Confidence            688999999998666433 3443

>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*

Probab=95.21  E-value=0.75  Score=35.18  Aligned_cols=181  Identities=9%  Similarity=0.006  Sum_probs=89.4

Q ss_pred             CCCCEEEEeeCCCeEEEEECCCCc------eeEEeeC-CcccEEEEEECCCCCeEEEEecCCCeEEEEecCCcceeeeec
Q 021247           70 PSGIIAASASLDSFVRVFDVDTNA------SIATLEA-SPSEVWQMQFDPKGTTLAVAGGGSASVKLWDTATWNLIATLS  142 (315)
Q Consensus        70 ~~g~~l~s~~~d~~i~~w~~~~~~------~~~~~~~-~~~~v~~~~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~  142 (315)
                      |.+.+|.....| +++.=......      ....+.. .-..+..++|+|++...++   .++.+.-.+..+.....-+.
T Consensus         2 ~~~~~l~~v~~d-~~y~G~~P~~~~~~~~~~a~~iG~~gw~~~~~laf~P~G~LYaV---~~G~Ly~~~~~t~~~~~W~~   77 (236)
T 1tl2_A            2 GGESMLRGVYQD-KFYQGTYPQNKNDNWLARATLIGKGGWSNFKFLFLSPGGELYGV---LNDKIYKGTPPTHDNDNWMG   77 (236)
T ss_dssp             CCCCCEEEEETT-EEEEESCCCSTTCCHHHHSEEEESSSCTTCSEEEECTTSCEEEE---ETTEEEEESCCCSTTCCHHH
T ss_pred             CcceEEEEEeCC-cEEecCCCCCcccchhhhccccCccccccceeEEECCCccEEEE---eCCeEEEECCCCCCcccccc
Confidence            345677777777 66654444333      1222222 1235669999998774443   55665555543211000000


Q ss_pred             CCCCCCCCCCccCCCCcceEEEEECCCCCEEEEecCCCcEEEEEccccee---e---eee-cCCccceEEEEEcCCCCcE
Q 021247          143 IPRPEGLKPTDKSSSKKFVLSVAWSPDGRRIACGSMDGTISVFDVTRAKF---L---HHL-EGHFMPVRSLVYSPVDPRV  215 (315)
Q Consensus       143 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~s~dg~i~i~d~~~~~~---~---~~~-~~~~~~v~~~~~~~~~~~~  215 (315)
                      ...     ........ ....+.|.|+|.+.++  .||.|+-++..+...   +   ..+ ..-=..+..+.|.| ++.+
T Consensus        78 s~t-----~IG~~Gw~-~F~a~~fD~~G~LYav--~dG~iyr~~pP~~~~~~Wl~~a~~vg~~gw~~~~~lff~p-~G~L  148 (236)
T 1tl2_A           78 RAK-----KIGNGGWN-QFQFLFFDPNGYLYAV--SKDKLYKASPPQSDTDNWIARATEVGSGGWSGFKFLFFHP-NGYL  148 (236)
T ss_dssp             HCE-----EEECSCGG-GCSEEEECTTSCEEEE--ETTEEEEESCCCSTTCCHHHHSEEEECSSGGGEEEEEECT-TSCE
T ss_pred             ccc-----Eecccccc-cceEEEECCCCCEEEe--CCCEEEEeCCCcCCCCceeccccEeccCCCCceEEEEECC-CceE
Confidence            000     00000001 1368999999987777  569998887632111   0   111 11113568888998 4544


Q ss_pred             EEEEeCCCeEEEEeCCCCe------eEEEee-cccccEEEEEEcCCCCeEEEEeCCCcE
Q 021247          216 LFSASDDTHVHMYDAEGKS------LVTAMS-GHASWVLSVDASPDGAAITTGSSDRTV  267 (315)
Q Consensus       216 l~s~~~d~~i~~wd~~~~~------~~~~~~-~~~~~i~~~~~~~~~~~l~s~~~d~~i  267 (315)
                      .+. . |+.++-...-...      ....+. ..-....-+.|.|++.+.++.  ++.+
T Consensus       149 yav-~-dg~lyr~~~P~~~~~~wl~~~~~~g~~g~~~yr~l~f~~~G~l~~v~--~g~~  203 (236)
T 1tl2_A          149 YAV-H-GQQFYKALPPVSNQDNWLARATKIGQGGWDTFKFLFFSSVGTLFGVQ--GGKF  203 (236)
T ss_dssp             EEE-E-TTEEEEECCCSSTTCCHHHHCEEEESSSGGGEEEEEECTTSCEEEEE--TTEE
T ss_pred             EEE-e-CCcEEecCCCCCCCcccccccceeccCCcceEEEEEECCCCcEEEEe--CCeE
Confidence            444 4 7776443322110      011111 222234456688888766655  6643

>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A

Probab=94.77  E-value=2.5  Score=38.94  Aligned_cols=265  Identities=11%  Similarity=0.143  Sum_probs=140.7

Q ss_pred             cceEEEEEeecCCCCCcEEEEeeCCCcEEEEcCCCCcceeeccccccceEEEEeCCCCCEEEEeeCCCeEEEEECCCCce
Q 021247           15 ESVWAVTWVPATETRPALLLTGSLDETVKLWRPDDMQLERTNTGHCLGVVSVAAHPSGIIAASASLDSFVRVFDVDTNAS   94 (315)
Q Consensus        15 ~~v~~v~~~~~~~~~~~~l~sgs~d~~v~~w~~~~~~~~~~~~~h~~~v~~~~~~~~g~~l~s~~~d~~i~~w~~~~~~~   94 (315)
                      ..|.++.-.+.     ..|..|..+| +..||..+.+...........|.++.. .+|. +..++.+ .+..++..+++.
T Consensus        63 ~~i~~i~~d~~-----g~lWigT~~G-l~~yd~~~~~f~~~~~~~~~~i~~i~~-~~g~-lWigt~~-Gl~~~~~~~~~~  133 (758)
T 3ott_A           63 TRIYCGVIIDN-----TYLYMGTDNG-ILVYNYRADRYEQPETDFPTDVRTMAL-QGDT-LWLGALN-GLYTYQLQSRKL  133 (758)
T ss_dssp             SCEEEEEEETT-----TEEEEEETTE-EEEEETTTTEECCCSCCCCSCEEEEEE-ETTE-EEEEETT-EEEEEETTTCCE
T ss_pred             ceEEEEEEcCC-----CcEEEEeCCC-eEEEeCCCCEEECcccCCCceEEEEEe-cCCc-EEEEcCC-cceeEeCCCCeE
Confidence            45777654322     3577777655 678888765443211112234666654 3554 4445555 588888876543


Q ss_pred             eEEee-----CCcccEEEEEECCCCCeEEEEecCCCeEEEEecCCcceeeeecCCCCCCCCCCccCCCCcceEEEEECCC
Q 021247           95 IATLE-----ASPSEVWQMQFDPKGTTLAVAGGGSASVKLWDTATWNLIATLSIPRPEGLKPTDKSSSKKFVLSVAWSPD  169 (315)
Q Consensus        95 ~~~~~-----~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~  169 (315)
                       ..+.     .....|.++....++...+  +.. +-+..+|..+.+.. .+..+...       ......|.++...++
T Consensus       134 -~~~~~~~~~l~~~~i~~i~~d~~g~lWi--gt~-~Gl~~~~~~~~~~~-~~~~~~~~-------~~~~~~i~~i~~d~~  201 (758)
T 3ott_A          134 -TSFDTRRNGLPNNTIYSIIRTKDNQIYV--GTY-NGLCRYIPSNGKFE-GIPLPVHS-------SQSNLFVNSLLEDTT  201 (758)
T ss_dssp             -EEECHHHHCCSCSCEEEEEECTTCCEEE--EET-TEEEEEETTTTEEE-EECCCCCT-------TCSSCCEEEEEEETT
T ss_pred             -EEeccCCCCcCCCeEEEEEEcCCCCEEE--EeC-CCHhhCccCCCceE-EecCCCcc-------ccccceeEEEEEECC
Confidence             3331     1234678888777776543  233 35777887654432 22211110       111234788888777


Q ss_pred             CCEEEEecCCCcEEEEEcccceeeeeecCCccceEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCeeEEEeec-------c
Q 021247          170 GRRIACGSMDGTISVFDVTRAKFLHHLEGHFMPVRSLVYSPVDPRVLFSASDDTHVHMYDAEGKSLVTAMSG-------H  242 (315)
Q Consensus       170 ~~~l~~~s~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~-------~  242 (315)
                      +..|..|+. +.+..+|..+++...........|.++...+ ++.+ ..|+.+ -+.+++.++.........       .
T Consensus       202 ~~~lWigt~-~Gl~~~~~~~~~~~~~~~l~~~~i~~i~~d~-~g~l-WigT~~-Gl~~~~~~~~~~~~~~~~~~~~~~l~  277 (758)
T 3ott_A          202 RQCVWIGTE-GYLFQYFPSTGQIKQTEAFHNNSIKSLALDG-NGDL-LAGTDN-GLYVYHNDTTPLQHIIHDSRNIQSLT  277 (758)
T ss_dssp             TTEEEEEEE-EEEEEEETTTTEEEEEEEEEEEEEEEEEECT-TCCE-EEEETT-EEEEECCTTSCCEEECCCTTCTTSCS
T ss_pred             CCEEEEEEC-CCCeEEcCCCCeEEeccCCCCCeEEEEEEcC-CCCE-EEEeCC-ceeEEecCCCcEEEEEcCCCCcCcCC
Confidence            776655654 4688899876654322111234577777654 3444 444444 588888876544322110       1


Q ss_pred             cccEEEEEEcCCCCeEEEEeCCCcEEEEecCcc-ceeh--ccc--ccccceEEEEEeeCCCEEEEEeCCC
Q 021247          243 ASWVLSVDASPDGAAITTGSSDRTVKLWDLNMR-AAMQ--SMT--NHTDQVWGVSFRPLGGRVVSVSDDK  307 (315)
Q Consensus       243 ~~~i~~~~~~~~~~~l~s~~~d~~i~iwd~~~~-~~~~--~~~--~~~~~v~~~~~s~~~~~l~s~~~d~  307 (315)
                      ...|.++..+.+|. |..|+..| +.+...... +...  ...  .....|.++.-..+|...+.. .+|
T Consensus       278 ~~~i~~i~~D~~g~-lWiGT~~G-l~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~D~~g~lWiGt-~~G  344 (758)
T 3ott_A          278 NNIIWNIFADQEHN-IWLGTDYG-ISLSRYNSALQFIPISQITGTGDGNQFYSLFRDSKGFYWFGG-ANG  344 (758)
T ss_dssp             CSCEEEEEECTTCC-EEEEESSS-EEEECCCC-CEEEEHHHHSCSCCCCBEEEEEECTTCCEEEEE-TTE
T ss_pred             cCeEEEEEEcCCCC-EEEEeCCc-ccccccCCceeEEecccCCCCCCCceEEEEEEcCCCCEEEee-CCc
Confidence            24588888888776 44555566 554433211 1110  000  112457777777777655543 444

>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}

Probab=93.40  E-value=2.8  Score=34.42  Aligned_cols=113  Identities=7%  Similarity=0.024  Sum_probs=70.8

Q ss_pred             cEEEEeeCCCcEEEEcCCCCcceeecccc-ccceEEEEeC--C-CCCEEEEe-eCCCeEEEEECCCCceeEEeeCC----
Q 021247           31 ALLLTGSLDETVKLWRPDDMQLERTNTGH-CLGVVSVAAH--P-SGIIAASA-SLDSFVRVFDVDTNASIATLEAS----  101 (315)
Q Consensus        31 ~~l~sgs~d~~v~~w~~~~~~~~~~~~~h-~~~v~~~~~~--~-~g~~l~s~-~~d~~i~~w~~~~~~~~~~~~~~----  101 (315)
                      .+++.++.||.|.-+|.++++....+... ..++....-.  + ++..++.. ..||.+..++..++.....+...    
T Consensus        11 ~~V~v~t~dG~l~Ald~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~vv~p~~dG~l~a~~~~~G~~~~~~~~~~lv~   90 (339)
T 2be1_A           11 DILIAADVEGGLHAVDRRNGHIIWSIEPENFQPLIEIQEPSRLETYETLIIEPFGDGNIYYFNAHQGLQKLPLSIRQLVS   90 (339)
T ss_dssp             EEEEEEETTSCEEEEETTTTEEEEEECGGGSCCSEECCCSCTTTSSEEEEECCSTTTEEEEEETTTEEEEEEEEHHHHHT
T ss_pred             CEEEEEeCCCeEEEEECCCCcEEEEecCCccCCcEEecCCccccCCcEEEEEECCCCEEEEEECCCCcEEeeecccccee
Confidence            47899999999999999888887765443 1233322111  1 23344333 58999999998887544333211    


Q ss_pred             cccEEEEE----E-CC---CCCeEEEEecCCCeEEEEecCCcceeeeecCC
Q 021247          102 PSEVWQMQ----F-DP---KGTTLAVAGGGSASVKLWDTATWNLIATLSIP  144 (315)
Q Consensus       102 ~~~v~~~~----~-~~---~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~  144 (315)
                      ..++.. .    . .+   .....+++|+.++.+...|+++++.+..+...
T Consensus        91 ~SP~~~-~~~pvv~~~~~~~~~g~Vy~Gs~~g~l~ald~~tG~~~W~~~~~  140 (339)
T 2be1_A           91 TSPLHL-KTNIVVNDSGKIVEDEKVYTGSMRTIMYTINMLNGEIISAFGPG  140 (339)
T ss_dssp             TCSEEE-ECC----------CCEEEEECEEEEEEEEEETTTCCEEEEESTT
T ss_pred             cccccc-CCCceeecccccccCCEEEEEecCCEEEEEECCCCcEEEEEecC
Confidence            112211 0    0 00   01235578889999999999999999988654

>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B

Probab=92.80  E-value=3  Score=33.17  Aligned_cols=219  Identities=13%  Similarity=0.030  Sum_probs=105.0

Q ss_pred             ceEEEEeCCCCCEEEEeeCCCeEEEEECCCCceeEEeeCCcccEEEEEECCCCCeEEEEecCCCeEEEEecCCcceeeee
Q 021247           62 GVVSVAAHPSGIIAASASLDSFVRVFDVDTNASIATLEASPSEVWQMQFDPKGTTLAVAGGGSASVKLWDTATWNLIATL  141 (315)
Q Consensus        62 ~v~~~~~~~~g~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~  141 (315)
                      .|..++.......++  . |+.++.|-.+....+-.-......|..++.-.  ...++. . |+.|..|-....-.+.  
T Consensus        25 ~i~~ia~G~~h~~~l--~-~G~v~~wG~n~~Gqlg~p~~~~~~i~~ia~G~--~hs~~l-~-~G~v~~wG~n~~Gqlg--   95 (282)
T 3qhy_B           25 GVDAIAGGYFHGLAL--K-GGKVLGWGANLNGQLTMPAATQSGVDAIAAGN--YHSLAL-K-DGEVIAWGGNEDGQTT--   95 (282)
T ss_dssp             SCCEEEECSSEEEEE--E-TTEEEEEECCSSSTTSCCGGGGSCCCEEEECS--SEEEEE-E-TTEEEEEECCTTSTTC--
T ss_pred             CCcEEEeCCCeEEEE--E-CCEEEEEeCCCCCCCCCCccCCCCEEEEEeCC--CEEEEE-E-CCEEEEeeCCCCCCCC--
Confidence            566776654433333  4 89999998664321111111123455555432  223333 3 7888888764321110  


Q ss_pred             cCCCCCCCCCCccCCCCcceEEEEECCCCCEEEEecCCCcEEEEEcccceeeeeecCCccceEEEEEcCCCCcEEEEEeC
Q 021247          142 SIPRPEGLKPTDKSSSKKFVLSVAWSPDGRRIACGSMDGTISVFDVTRAKFLHHLEGHFMPVRSLVYSPVDPRVLFSASD  221 (315)
Q Consensus       142 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~s~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~  221 (315)
                       .|.       ..   ...|..++....  ..++-. +|.|+.|=....-.+..-......|..++-..   ...+.-. 
T Consensus        96 -~P~-------~~---~~~v~~ia~G~~--hs~al~-~G~v~~wG~n~~gqlg~~~~~~~~i~~i~~G~---~~~~~l~-  157 (282)
T 3qhy_B           96 -VPA-------EA---RSGVDAIAAGAW--ASYALK-DGKVIAWGDDSDGQTTVPAEAQSGVTALDGGV---YTALAVK-  157 (282)
T ss_dssp             -CCG-------GG---SSSEEEEEEETT--EEEEEE-TTEEEEEECCTTSTTSCCGGGGSSEEEEEECS---SEEEEEE-
T ss_pred             -CCc-------cc---CCCeEEEECcCC--EEEEEe-CCeEEEecCCCCCcCCCCccCCCCeEEEEccc---CEEEEEE-
Confidence             110       00   123666665543  333334 88999996532111111111223566665442   2222233 


Q ss_pred             CCeEEEEeCCCCeeEEEeecccccEEEEEEcCCCCeEEEEeCCCcEEEEecCccceehcccccccceEEEEEeeCCCEEE
Q 021247          222 DTHVHMYDAEGKSLVTAMSGHASWVLSVDASPDGAAITTGSSDRTVKLWDLNMRAAMQSMTNHTDQVWGVSFRPLGGRVV  301 (315)
Q Consensus       222 d~~i~~wd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~  301 (315)
                      |+.++.|-....-.+.....-...|..++..... .++.  .||.|..|-.+....+..-......|..++-...  +.+
T Consensus       158 ~G~v~~wG~n~~gqlg~p~~~~~~v~~i~~G~~h-s~al--~~G~v~~wG~n~~gqlg~p~~~~~~v~~i~~G~~--h~~  232 (282)
T 3qhy_B          158 NGGVIAWGDNYFGQTTVPAEAQSGVDDVAGGIFH-SLAL--KDGKVIAWGDNRYKQTTVPTEALSGVSAIASGEW--YSL  232 (282)
T ss_dssp             TTEEEEEECCTTSTTSCCGGGGSSEEEEEECSSE-EEEE--ETTEEEEEECCTTSTTCCCGGGGSSCCEEEECSS--CEE
T ss_pred             CCEEEEecCCCCCCCCCceecCCCeEEEEecCCE-EEEE--ECCeEEEEECCCCCCCCCCcccCCCceEEEcCCC--EEE
Confidence            7899999754321111111123457777765543 3343  5999999976543222111111234555554433  333


Q ss_pred             EEeCCCcEEEee
Q 021247          302 SVSDDKSISLYE  313 (315)
Q Consensus       302 s~~~d~~i~i~~  313 (315)
                      ... ||+|..|-
T Consensus       233 al~-~g~v~~wG  243 (282)
T 3qhy_B          233 ALK-NGKVIAWG  243 (282)
T ss_dssp             EEE-TTEEEEES
T ss_pred             EEE-CCEEEEec
Confidence            333 88887774

>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A

Probab=92.62  E-value=2.3  Score=37.44  Aligned_cols=87  Identities=10%  Similarity=0.091  Sum_probs=53.9

Q ss_pred             ccEEEEEECCCCCeEEEEecCCCeEEEEecCCcceeeeecCCCCCCCCCCccCCCCcceEEEEECCCCCEEEEecCCCcE
Q 021247          103 SEVWQMQFDPKGTTLAVAGGGSASVKLWDTATWNLIATLSIPRPEGLKPTDKSSSKKFVLSVAWSPDGRRIACGSMDGTI  182 (315)
Q Consensus       103 ~~v~~~~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~s~dg~i  182 (315)
                      ...-.+..+|+|++++++|-.+.++.++|.+.......-.+..+......+ ...-......+|.++|+-..+-..|..|
T Consensus       323 ksPHGv~vsPDGkyi~v~GKLsptvtV~d~~k~~~~~~~k~~~~~~~~~ae-~e~GlGPlHt~Fd~~G~aYTtlfidSqv  401 (638)
T 3sbq_A          323 KNPHGCNTSSDGKYFIAAGKLSPTCSMIAIDKLPDLFAGKLADPRDVIVGE-PELGLGPLHTTFDGRGNAYTTLFIDSQV  401 (638)
T ss_dssp             SSCCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHHTTCCSCGGGGEEEC-CBCCSCEEEEEECSSSEEEEEETTTTEE
T ss_pred             CCCcceeeCCCCCEEEEcCCCCCeEEEEEeehhhhhhhccccCcccceEee-ccCCCcccEEEECCCCceEeeeeecceE
Confidence            334567889999999999999999999998752211000000000000000 0001125678999999666677799999


Q ss_pred             EEEEcccc
Q 021247          183 SVFDVTRA  190 (315)
Q Consensus       183 ~i~d~~~~  190 (315)
                      ..|++...
T Consensus       402 vkWni~~a  409 (638)
T 3sbq_A          402 VKWNMEEA  409 (638)
T ss_dssp             EEEEHHHH
T ss_pred             EEEeccHH
Confidence            99998653

>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A

Probab=92.35  E-value=4.9  Score=34.51  Aligned_cols=119  Identities=13%  Similarity=0.226  Sum_probs=61.2

Q ss_pred             EEeeCCcccEEEEEECCCCCeEEEEecCCCeEEEEecCCcceeeeecCCCCCCCCCCccCCCCcceEEEEECCC---CCE
Q 021247           96 ATLEASPSEVWQMQFDPKGTTLAVAGGGSASVKLWDTATWNLIATLSIPRPEGLKPTDKSSSKKFVLSVAWSPD---GRR  172 (315)
Q Consensus        96 ~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~---~~~  172 (315)
                      ..+.......+.++|.|+|.. +++-...+.|.+++..+++......++...     ...........|+|+|+   +.+
T Consensus        20 ~~~a~~l~~P~~~a~~pdG~l-~V~e~~gg~I~~~~~~~g~~~~~~~~~~~~-----~~~~g~~Gllgia~~Pdf~~~g~   93 (454)
T 1cru_A           20 KVILSNLNKPHALLWGPDNQI-WLTERATGKILRVNPESGSVKTVFQVPEIV-----NDADGQNGLLGFAFHPDFKNNPY   93 (454)
T ss_dssp             EEEECCCSSEEEEEECTTSCE-EEEETTTCEEEEECTTTCCEEEEEECTTCC-----CCTTSSCSEEEEEECTTTTTSCE
T ss_pred             EEEECCCCCceEEEEcCCCcE-EEEEcCCCEEEEEECCCCcEeEEecCCccc-----cccCCCCceeEEEECCCcCcCCE
Confidence            334334456789999999984 444333346888876544332222221110     00011234779999995   555


Q ss_pred             EEEec-C------------CCcEEEEEcccc-------eeee-eecC-CccceEEEEEcCCCCcEEEEEeC
Q 021247          173 IACGS-M------------DGTISVFDVTRA-------KFLH-HLEG-HFMPVRSLVYSPVDPRVLFSASD  221 (315)
Q Consensus       173 l~~~s-~------------dg~i~i~d~~~~-------~~~~-~~~~-~~~~v~~~~~~~~~~~~l~s~~~  221 (315)
                      |..+. .            ...|.-+++...       +.+. .+.. .......+.|.| ++.++++.++
T Consensus        94 lYv~~s~~~~~~~~~~~~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~H~~~~l~f~p-DG~Lyv~~Gd  163 (454)
T 1cru_A           94 IYISGTFKNPKSTDKELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPSSKDHQSGRLVIGP-DQKIYYTIGD  163 (454)
T ss_dssp             EEEEEEEECTTC--CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECCCSSCCEEEEEECT-TSCEEEEECC
T ss_pred             EEEEEeccccCCCccccccccEEEEEEECCCCCCcCCcEEEEEcCCCCCCCCCCeEeECC-CCeEEEEECC
Confidence            54433 2            235666665321       1111 1221 112357899998 5567666543

>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A

Probab=91.44  E-value=7.1  Score=34.48  Aligned_cols=68  Identities=10%  Similarity=0.087  Sum_probs=47.6

Q ss_pred             EEEEEEcCCCCeEEEE-eCCCcEEEEecCccce-------------ehcccccccceEEEEEeeCCCEEEEEeCCCcEEE
Q 021247          246 VLSVDASPDGAAITTG-SSDRTVKLWDLNMRAA-------------MQSMTNHTDQVWGVSFRPLGGRVVSVSDDKSISL  311 (315)
Q Consensus       246 i~~~~~~~~~~~l~s~-~~d~~i~iwd~~~~~~-------------~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~i~i  311 (315)
                      ...+.++|+|++++.+ -.+.++.++|+..-..             ..+.+ -.-.....+|.++|....+.-.|..|--
T Consensus       325 PHGv~vsPDGkyi~v~GKLsptvtV~d~~k~~~~~~~k~~~~~~~~~ae~e-~GlGPlHt~Fd~~G~aYTtlfidSqvvk  403 (638)
T 3sbq_A          325 PHGCNTSSDGKYFIAAGKLSPTCSMIAIDKLPDLFAGKLADPRDVIVGEPE-LGLGPLHTTFDGRGNAYTTLFIDSQVVK  403 (638)
T ss_dssp             CCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHHTTCCSCGGGGEEECCB-CCSCEEEEEECSSSEEEEEETTTTEEEE
T ss_pred             CcceeeCCCCCEEEEcCCCCCeEEEEEeehhhhhhhccccCcccceEeecc-CCCcccEEEECCCCceEeeeeecceEEE
Confidence            4468899999987555 4577899999874211             11111 1234668999999966667778999999


Q ss_pred             eec
Q 021247          312 YEY  314 (315)
Q Consensus       312 ~~~  314 (315)
                      |++
T Consensus       404 Wni  406 (638)
T 3sbq_A          404 WNM  406 (638)
T ss_dssp             EEH
T ss_pred             Eec
Confidence            986

>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}

Probab=90.97  E-value=5.8  Score=32.64  Aligned_cols=232  Identities=12%  Similarity=0.143  Sum_probs=112.7

Q ss_pred             cceEEEEEeecCCCCCcEEEEeeCCCcEEEEcCCCCcceee--c----cccccceEEEEeCCC----CCEEEEe--eCCC
Q 021247           15 ESVWAVTWVPATETRPALLLTGSLDETVKLWRPDDMQLERT--N----TGHCLGVVSVAAHPS----GIIAASA--SLDS   82 (315)
Q Consensus        15 ~~v~~v~~~~~~~~~~~~l~sgs~d~~v~~w~~~~~~~~~~--~----~~h~~~v~~~~~~~~----g~~l~s~--~~d~   82 (315)
                      +..++++|.|++.    ++++--..|.|++++.++.+....  +    .....+...++++|+    +.+.++-  ..+.
T Consensus        32 ~~P~~ia~~pdG~----llVter~~G~I~~v~~~~g~~~~v~~~~~v~~~g~~GllGia~~Pdf~~~g~lYv~yt~~~~~  107 (347)
T 3das_A           32 NSPWGLAPLPGGD----LLVSSRDEATITRVDAKTGRKTELGEVPGVSPSGEGGLLGIALSPDYASDHMVYAYFTSASDN  107 (347)
T ss_dssp             SSEEEEEECTTSC----EEEEETTTCEEEEECTTTCCEEEEEECTTCCCBTTBSEEEEEECTTHHHHCEEEEEEECSSSE
T ss_pred             CCceEEEEcCCCc----EEEEEecCCEEEEEECCCCcEeeecccCceeecCCCCceeeEeccccccCCEEEEEEecCCCC
Confidence            4678999998764    444443489999998655443211  1    123457899999995    5555542  2344


Q ss_pred             eEEEEECCCC----------ceeE-EeeC-CcccEEEEEECCCCCeEEEEecCC-------------CeEEEEecCCcce
Q 021247           83 FVRVFDVDTN----------ASIA-TLEA-SPSEVWQMQFDPKGTTLAVAGGGS-------------ASVKLWDTATWNL  137 (315)
Q Consensus        83 ~i~~w~~~~~----------~~~~-~~~~-~~~~v~~~~~~~~~~~~~~~~~~d-------------~~i~~~d~~~~~~  137 (315)
                      .|.-|.+..+          +.+. .+.. .......+.|.|+|..+ ++.++.             +.|.-.+... + 
T Consensus       108 ~v~R~~~~~~~~~~~~~~~~~~i~~~~p~~~~H~g~~l~fgpDG~Ly-vt~Gd~~~~~~~qd~~~~~G~IlRi~~dG-~-  184 (347)
T 3das_A          108 RIVRMLYDEKKPSGEQLGAPDTVFRGIPKGVIHNGGRIAFGPDKMLY-AGTGESGDTGLSQDRKSLGGKILRMTPDG-E-  184 (347)
T ss_dssp             EEEEEEBCTTSCTTCCBCCCEEEEEEECCCSSCCCCCEEECTTSCEE-EECBCTTCGGGTTCTTCSTTCEEEECTTS-S-
T ss_pred             EEEEEEeCCCCcccccCCCcEEEEEcCCCCCCccCccccCCCCCCEE-EEECCCCCCccccCCCCCCCEEEEEeCCC-C-
Confidence            5655665541          1111 1211 11123468899998644 443321             2222222211 0 


Q ss_pred             eeeecCCCCCCC--CCCccCCCCcceEEEEECCCCCEEEEe-cCCCcEEEEEccccee------------------eeee
Q 021247          138 IATLSIPRPEGL--KPTDKSSSKKFVLSVAWSPDGRRIACG-SMDGTISVFDVTRAKF------------------LHHL  196 (315)
Q Consensus       138 ~~~~~~~~~~~~--~~~~~~~~~~~i~~~~~~~~~~~l~~~-s~dg~i~i~d~~~~~~------------------~~~~  196 (315)
                           ++....+  .......+. -...++|+|+|++.++- +.++.=.+--+..+..                  +..+
T Consensus       185 -----ip~~nPf~~~~i~a~G~R-Np~Gla~dp~G~L~~~d~g~~~~deln~i~~G~nyGwP~~~g~~~~~~~~~P~~~~  258 (347)
T 3das_A          185 -----PAPGNPFPGSPVYSYGHR-NVQGLAWDDKQRLFASEFGQDTWDELNAIKPGDNYGWPEAEGKGGGSGFHDPVAQW  258 (347)
T ss_dssp             -----BCTTCSSTTCCEEEBCCS-BCCEEEECTTCCEEEEECCSSSCEEEEEECTTCBCCTTTCCSSCCCTTCCCCSEEE
T ss_pred             -----ccCCCCCCCCeEEeeCCC-CcceEEECCCCCEEEEecCCCCCceeeEEcCCCEecCCcccCCCCCccccCCcEec
Confidence                 0000000  000011221 24589999987765543 2333222222222211                  1111


Q ss_pred             cCCccceEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCee----EEEeecccccEEEEEEcCCCCeEEEE
Q 021247          197 EGHFMPVRSLVYSPVDPRVLFSASDDTHVHMYDAEGKSL----VTAMSGHASWVLSVDASPDGAAITTG  261 (315)
Q Consensus       197 ~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~----~~~~~~~~~~i~~~~~~~~~~~l~s~  261 (315)
                      ..+......+.|.  ++.+++..-..+.|....++....    ...+.+....+.+++..|+|.++++-
T Consensus       259 ~~~~~ap~G~~~~--~g~~~~~~l~~~~l~~v~~~~~~~~~~~e~~l~~~~gR~~dv~~~pDG~lyv~t  325 (347)
T 3das_A          259 STDEASPSGIAYA--EGSVWMAGLRGERLWRIPLKGTAAAADPQAFLEGEYGRLRTVAPAGGDKLWLVT  325 (347)
T ss_dssp             CTTTCCEEEEEEE--TTEEEEEESTTCSEEEEEEETTEESSCCEEESTTTSSCEEEEEEEETTEEEEEE
T ss_pred             CCCCCCCcceEEE--cCceeeccccCCEEEEEEecCCceecceEEeecCCCCCccEEEECCCCcEEEEE
Confidence            1121244566665  355666665666666555543321    22233334668888888888765543

>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A

Probab=89.82  E-value=17  Score=36.20  Aligned_cols=187  Identities=11%  Similarity=0.137  Sum_probs=94.4

Q ss_pred             EEEEeeCCCcEEEEcCCCCcceeeccccccceEEEEe-CCCCCEEEEeeCCCeEEEEECCCCc-eeEEeeCC----cccE
Q 021247           32 LLLTGSLDETVKLWRPDDMQLERTNTGHCLGVVSVAA-HPSGIIAASASLDSFVRVFDVDTNA-SIATLEAS----PSEV  105 (315)
Q Consensus        32 ~l~sgs~d~~v~~w~~~~~~~~~~~~~h~~~v~~~~~-~~~g~~l~s~~~d~~i~~w~~~~~~-~~~~~~~~----~~~v  105 (315)
                      +++-=+ ..+++++|.++.+..+...-.. +|..=.| +++.--++|   +..|+-|++.... +...++.|    ...|
T Consensus        79 iiALra-g~~lQiFnl~~k~klks~~~~e-~VvfWkWis~~~l~lVT---~~aVyHW~~~~~s~P~k~fdR~~~L~~~QI  153 (1630)
T 1xi4_A           79 VIALKA-GKTLQIFNIEMKSKMKAHTMTD-DVTFWKWISLNTVALVT---DNAVYHWSMEGESQPVKMFDRHSSLAGCQI  153 (1630)
T ss_pred             eEEEec-CCeEEEeehHHhhhhcccccCC-CceEEEecCCCeeEEEc---CCeEEEeccCCCCccHHHHhcchhcccCee
Confidence            344433 6789999987665444433222 3433333 444333343   4579999997532 33333333    3467


Q ss_pred             EEEEECCCCCeEEEEec------CCCeEEEEecCCcceeeeecCCCCCCCCCCccCCCCcceEEEEEC--CCCCEEEE-e
Q 021247          106 WQMQFDPKGTTLAVAGG------GSASVKLWDTATWNLIATLSIPRPEGLKPTDKSSSKKFVLSVAWS--PDGRRIAC-G  176 (315)
Q Consensus       106 ~~~~~~~~~~~~~~~~~------~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--~~~~~l~~-~  176 (315)
                      ...+.+++.+.+++.|-      -.|.+.+|........ .+             .+|......+...  +....+++ +
T Consensus       154 inY~~d~~~kW~~l~gi~~~~~~v~G~mQLyS~er~~sQ-~i-------------egha~~F~~~~~~~~~~~~~l~~f~  219 (1630)
T 1xi4_A          154 INYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKVSQ-PI-------------EGHAASFAQFKMEGNAEESTLFCFA  219 (1630)
T ss_pred             EEeeeCCCCCeEEEEeeccCCCcccceeeeeecccccch-hh-------------hHhHhhhheeccCCCCCCceEEEEE
Confidence            77777888887776653      2467777776542110 00             0110000011110  11111211 1


Q ss_pred             ---cCCCcEEEEEcccc---ee--eee----ec---CCccceEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCeeEEE
Q 021247          177 ---SMDGTISVFDVTRA---KF--LHH----LE---GHFMPVRSLVYSPVDPRVLFSASDDTHVHMYDAEGKSLVTA  238 (315)
Q Consensus       177 ---s~dg~i~i~d~~~~---~~--~~~----~~---~~~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~  238 (315)
                         ...+.+++.++...   ..  ...    ..   ....-..++..++. -.++..-+.-|.|++||+.+++.+..
T Consensus       220 ~~~~~g~kLhi~Ei~~~~~~~~~f~kk~~~~~~~~~~~~Dfpv~~~vs~k-~g~iy~itk~G~~~~~d~~t~~~i~~  295 (1630)
T 1xi4_A          220 VRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEK-HDVVFLITKYGYIHLYDLETGTCIYM  295 (1630)
T ss_pred             EecCCCceEEEEecCCCccCCCCCccccccccCCcccccCcceEEEeccc-cCEEEEEecCceEEEEecccchhhhh
Confidence               11367888887432   10  000    00   01122234555553 34677788899999999999876643

>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1

Probab=88.94  E-value=10  Score=32.41  Aligned_cols=224  Identities=10%  Similarity=0.089  Sum_probs=121.4

Q ss_pred             EEEEeeCCCcEEEEcCCCCcceeeccccccceEEEEeCCCCCEEEEeeCCCeEEEEECCCC-ceeEEeeCCc----ccEE
Q 021247           32 LLLTGSLDETVKLWRPDDMQLERTNTGHCLGVVSVAAHPSGIIAASASLDSFVRVFDVDTN-ASIATLEASP----SEVW  106 (315)
Q Consensus        32 ~l~sgs~d~~v~~w~~~~~~~~~~~~~h~~~v~~~~~~~~g~~l~s~~~d~~i~~w~~~~~-~~~~~~~~~~----~~v~  106 (315)
                      ++|-=+ ..+++++|.++.+..+...-...-+.-=.++++-.-|++   +..|+-|++... .+...++.|.    ..|.
T Consensus        79 iiALra-g~~lQiFnle~K~klks~~~~e~VvfWkWis~~~l~lVT---~taVyHWsi~~~s~P~kvFdR~~~L~~~QII  154 (494)
T 1bpo_A           79 VIALKA-GKTLQIFNIEMKSKMKAHTMTDDVTFWKWISLNTVALVT---DNAVYHWSMEGESQPVKMFDRHSSLAGCQII  154 (494)
T ss_dssp             CEEEEE-TTEEEEEETTTTEEEEEEECSSCCCEEEEEETTEEEEEC---SSEEEEEESSSSCCCEEEEECCGGGTTCEEE
T ss_pred             EEEEec-CCeEEEEchHHhhhhcceecCCCceEEEecCCCeEEEEc---CCeeEEecccCCCCchhheecchhcccceEE
Confidence            444444 678999999877665554333333333333444323332   457999999754 3455555443    4677


Q ss_pred             EEEECCCCCeEEEEec------CCCeEEEEecCCcceeeeecCCCCCCCCCCccCCCCcceEEEEECC--CCCEEEE-ec
Q 021247          107 QMQFDPKGTTLAVAGG------GSASVKLWDTATWNLIATLSIPRPEGLKPTDKSSSKKFVLSVAWSP--DGRRIAC-GS  177 (315)
Q Consensus       107 ~~~~~~~~~~~~~~~~------~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~--~~~~l~~-~s  177 (315)
                      ....+++.+-+++.|-      -.|.+.+|..+..... .+             .+|......+...-  ....|++ +.
T Consensus       155 nY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~er~~sQ-~i-------------eGhaa~F~~~~~~g~~~~~~lf~fa~  220 (494)
T 1bpo_A          155 NYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKVSQ-PI-------------EGHAASFAQFKMEGNAEESTLFCFAV  220 (494)
T ss_dssp             EEEECTTSSEEEEEEEEEETTEEEEEEEEEESTTCCEE-EE-------------CCSEEEEEEEECTTCSSEEEEEEEEE
T ss_pred             EEEECCCCCeEEEEeecccCCcccceEEEeeccccccc-hh-------------eeeeeeeEEEecCCCCCCceEEEEEE
Confidence            7788888888776653      2366777776542211 01             11111111111111  1111222 21


Q ss_pred             ---CCCcEEEEEcccc---e--e---eeee-c---CCccceEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCeeEEEeecc
Q 021247          178 ---MDGTISVFDVTRA---K--F---LHHL-E---GHFMPVRSLVYSPVDPRVLFSASDDTHVHMYDAEGKSLVTAMSGH  242 (315)
Q Consensus       178 ---~dg~i~i~d~~~~---~--~---~~~~-~---~~~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~  242 (315)
                         ..+.+++.++...   .  .   ...+ .   ...+-..++..++. -.++..-+.-|.|++||+.++.++..-+--
T Consensus       221 r~~~g~kLhi~Ei~~~~~~~~~f~kk~vdv~fppe~~~DFPvamqvs~k-ygviyviTK~G~i~lyDleTgt~i~~nrIs  299 (494)
T 1bpo_A          221 RGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEK-HDVVFLITKYGYIHLYDLETGTCIYMNRIS  299 (494)
T ss_dssp             CSTTCCEEEEEECSCCCTTCCCCCCEEEECCCCTTSTTCCEEEEEEETT-TTEEEEEETTSEEEEEETTTCCEEEEEECC
T ss_pred             ecCCCcEEEEEEcCCCccCCCCccceeeeeeCCcccccCceeEEEeccc-CCEEEEEecCceEEEEecccceeeeeeccc
Confidence               2368888888432   1  0   0111 0   11233456666663 347778889999999999999887765544


Q ss_pred             cccEEEEEEcCCCCeEEEEeCCCcEEEEecCc
Q 021247          243 ASWVLSVDASPDGAAITTGSSDRTVKLWDLNM  274 (315)
Q Consensus       243 ~~~i~~~~~~~~~~~l~s~~~d~~i~iwd~~~  274 (315)
                      ...|...+.+....=++.....|.|.--.++.
T Consensus       300 ~~~iF~t~~~~~~~Gi~~Vnr~GqVl~v~v~e  331 (494)
T 1bpo_A          300 GETIFVTAPHEATAGIIGVNRKGQVLSVCVEE  331 (494)
T ss_dssp             SSCEEEEEEETTTTEEEEEETTCEEEEEEECT
T ss_pred             CCceEEecccCCCCcEEEEccCceEEEEEEcc
Confidence            45555444444333344445777766655554

>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B

Probab=87.94  E-value=8.8  Score=30.45  Aligned_cols=240  Identities=14%  Similarity=0.028  Sum_probs=117.9

Q ss_pred             cceEEEEEeecCCCCCcEEEEeeCCCcEEEEcCCCC-cceeeccccccceEEEEeCCCCCEEEEeeCCCeEEEEECCCCc
Q 021247           15 ESVWAVTWVPATETRPALLLTGSLDETVKLWRPDDM-QLERTNTGHCLGVVSVAAHPSGIIAASASLDSFVRVFDVDTNA   93 (315)
Q Consensus        15 ~~v~~v~~~~~~~~~~~~l~sgs~d~~v~~w~~~~~-~~~~~~~~h~~~v~~~~~~~~g~~l~s~~~d~~i~~w~~~~~~   93 (315)
                      ..|..|+-....     .++. . ||.|..|-.... ++.... .....|..++.......++  . ||.++.|-.+...
T Consensus        24 ~~i~~ia~G~~h-----~~~l-~-~G~v~~wG~n~~Gqlg~p~-~~~~~i~~ia~G~~hs~~l--~-~G~v~~wG~n~~G   92 (282)
T 3qhy_B           24 SGVDAIAGGYFH-----GLAL-K-GGKVLGWGANLNGQLTMPA-ATQSGVDAIAAGNYHSLAL--K-DGEVIAWGGNEDG   92 (282)
T ss_dssp             SSCCEEEECSSE-----EEEE-E-TTEEEEEECCSSSTTSCCG-GGGSCCCEEEECSSEEEEE--E-TTEEEEEECCTTS
T ss_pred             CCCcEEEeCCCe-----EEEE-E-CCEEEEEeCCCCCCCCCCc-cCCCCEEEEEeCCCEEEEE--E-CCEEEEeeCCCCC
Confidence            356666543321     2333 4 999999975432 222111 1223566777655444433  4 8999999866432


Q ss_pred             eeEEeeCCcccEEEEEECCCCCeEEEEecCCCeEEEEecCCcceeeeecCCCCCCCCCCccCCCCcceEEEEECCCCCEE
Q 021247           94 SIATLEASPSEVWQMQFDPKGTTLAVAGGGSASVKLWDTATWNLIATLSIPRPEGLKPTDKSSSKKFVLSVAWSPDGRRI  173 (315)
Q Consensus        94 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l  173 (315)
                      .+-.-......|..++.-..  ..++. . ++.|..|-....-.+.   .+.          .....|..++..... .+
T Consensus        93 qlg~P~~~~~~v~~ia~G~~--hs~al-~-~G~v~~wG~n~~gqlg---~~~----------~~~~~i~~i~~G~~~-~~  154 (282)
T 3qhy_B           93 QTTVPAEARSGVDAIAAGAW--ASYAL-K-DGKVIAWGDDSDGQTT---VPA----------EAQSGVTALDGGVYT-AL  154 (282)
T ss_dssp             TTCCCGGGSSSEEEEEEETT--EEEEE-E-TTEEEEEECCTTSTTS---CCG----------GGGSSEEEEEECSSE-EE
T ss_pred             CCCCCcccCCCeEEEECcCC--EEEEE-e-CCeEEEecCCCCCcCC---CCc----------cCCCCeEEEEcccCE-EE
Confidence            21111111235666655432  22222 3 8899999764321110   000          011225566554332 22


Q ss_pred             EEecCCCcEEEEEcccceeeeeecCCccceEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCeeEEEeecccccEEEEEEcC
Q 021247          174 ACGSMDGTISVFDVTRAKFLHHLEGHFMPVRSLVYSPVDPRVLFSASDDTHVHMYDAEGKSLVTAMSGHASWVLSVDASP  253 (315)
Q Consensus       174 ~~~s~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~i~~~~~~~  253 (315)
                      + -. ||.++.|-......+..-..-...|..++-..  ...++.  .|+.++.|-....-.+.........|..++...
T Consensus       155 ~-l~-~G~v~~wG~n~~gqlg~p~~~~~~v~~i~~G~--~hs~al--~~G~v~~wG~n~~gqlg~p~~~~~~v~~i~~G~  228 (282)
T 3qhy_B          155 A-VK-NGGVIAWGDNYFGQTTVPAEAQSGVDDVAGGI--FHSLAL--KDGKVIAWGDNRYKQTTVPTEALSGVSAIASGE  228 (282)
T ss_dssp             E-EE-TTEEEEEECCTTSTTSCCGGGGSSEEEEEECS--SEEEEE--ETTEEEEEECCTTSTTCCCGGGGSSCCEEEECS
T ss_pred             E-EE-CCEEEEecCCCCCCCCCceecCCCeEEEEecC--CEEEEE--ECCeEEEEECCCCCCCCCCcccCCCceEEEcCC
Confidence            2 23 68888886532111111111123566666542  223333  589999997543211111111223466777655


Q ss_pred             CCCeEEEEeCCCcEEEEecCccceehcccccccceEEEEEeeC
Q 021247          254 DGAAITTGSSDRTVKLWDLNMRAAMQSMTNHTDQVWGVSFRPL  296 (315)
Q Consensus       254 ~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~  296 (315)
                      ....+++   ||+|..|-.+...++..    ...|.+++-...
T Consensus       229 ~h~~al~---~g~v~~wG~n~~gq~~v----~~~v~~iaaG~~  264 (282)
T 3qhy_B          229 WYSLALK---NGKVIAWGSSRTAPSSV----QSGVSSIEAGPN  264 (282)
T ss_dssp             SCEEEEE---TTEEEEESTTCCCCGGG----SSCEEEEEECSS
T ss_pred             CEEEEEE---CCEEEEecCCCCccccC----CCCcEEEEECcC
Confidence            4333333   99999998766544443    235666665554

>3b7f_A Glycosyl hydrolase, BNR repeat; 7-bladed beta-propeller fold, structural genomics, joint CEN structural genomics, JCSG; 2.20A {Ralstonia eutropha}

Probab=87.49  E-value=11  Score=31.27  Aligned_cols=274  Identities=9%  Similarity=0.009  Sum_probs=120.5

Q ss_pred             CcEEEEeeCCCcEEEEcCCC-Ccceeec--cccccceEEEEeCC--CCCEEEEeeCCC----eEEEEECCCCceeEEeeC
Q 021247           30 PALLLTGSLDETVKLWRPDD-MQLERTN--TGHCLGVVSVAAHP--SGIIAASASLDS----FVRVFDVDTNASIATLEA  100 (315)
Q Consensus        30 ~~~l~sgs~d~~v~~w~~~~-~~~~~~~--~~h~~~v~~~~~~~--~g~~l~s~~~d~----~i~~w~~~~~~~~~~~~~  100 (315)
                      +..|+.|...| +.+++.+. .+.-...  ......|.+|.++|  .+.+.+.+ ..+    .|... .+.++.-..+..
T Consensus        22 ~g~l~vgt~~G-l~~~~~~~~g~~W~~~~~~~~~~~v~~i~~dp~~~~~l~~g~-~~g~~g~gl~~s-~D~G~tW~~~~~   98 (394)
T 3b7f_A           22 PVMLLVATIKG-AWFLASDPARRTWELRGPVFLGHTIHHIVQDPREPERMLMAA-RTGHLGPTVFRS-DDGGGNWTEATR   98 (394)
T ss_dssp             CCEEEEEETTE-EEEEEECTTSCSEEEEEEESTTSEEEEEEECSSSTTCEEEEE-EC--CCEEEEEE-SSTTSCCEECSB
T ss_pred             CCEEEEEecCc-eEEEECCCCCCCceECCccCCCCceEEEEECCCCCCeEEEEe-cCCCCCccEEEe-CCCCCCceECCc
Confidence            34688888777 44454332 1111111  11234689999998  55555544 333    34332 223333222211


Q ss_pred             --------------CcccEEEEEECCC--CCeEEEEecCCCeEEEEecCCcceeeeecCC-CCCCC--CC--CccCCCCc
Q 021247          101 --------------SPSEVWQMQFDPK--GTTLAVAGGGSASVKLWDTATWNLIATLSIP-RPEGL--KP--TDKSSSKK  159 (315)
Q Consensus       101 --------------~~~~v~~~~~~~~--~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~-~~~~~--~~--~~~~~~~~  159 (315)
                                    ....|..++++|.  ...+++ +...+.|...+-............ .+...  ..  ........
T Consensus        99 ~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~l~~-g~~~ggl~~S~DgG~tW~~~~~~~~~p~~~~~~~~~~~g~~~~~  177 (394)
T 3b7f_A           99 PPAFNKAPEGETGRVVDHVFWLTPGHASEPGTWYA-GTSPQGLFRSTDHGASWEPVAGFNDHPMRRAWTGGEQDGTPDGP  177 (394)
T ss_dssp             CCCCCCCC----CCCCCEEEEEEECCTTSTTCEEE-EEETTEEEEESSTTSBCEECHHHHTCTTHHHHHCCC----CCCC
T ss_pred             cccCCCcccccccccccceeEEEeCCCCCCCEEEE-EecCCcEEEEcCCCCCeEECcCccCCccccccccccccCCCCCC
Confidence                          1124778888873  344443 334455544432211111110000 00000  00  00001123


Q ss_pred             ceEEEEECCC-CCEEEEecCCCcEEEEEcccceeeeeecC----C---------ccceEEEEEcCCCCcEEEEEeCCCeE
Q 021247          160 FVLSVAWSPD-GRRIACGSMDGTISVFDVTRAKFLHHLEG----H---------FMPVRSLVYSPVDPRVLFSASDDTHV  225 (315)
Q Consensus       160 ~i~~~~~~~~-~~~l~~~s~dg~i~i~d~~~~~~~~~~~~----~---------~~~v~~~~~~~~~~~~l~s~~~d~~i  225 (315)
                      .+..+.++|. ...+..+..++.|...+- .++....+..    .         ...+..+.+.|.++..+..+...+ |
T Consensus       178 ~i~~i~~d~~~~~~l~vg~~~ggl~~s~D-gG~tW~~~~~~~~~~~~p~~~~~~g~~~~~i~~~~~~~~~l~vg~~~g-l  255 (394)
T 3b7f_A          178 KMHSILVDPRDPKHLYIGMSSGGVFESTD-AGTDWKPLNRGCAANFLPDPNVEFGHDPHCVVQHPAAPDILYQQNHCG-I  255 (394)
T ss_dssp             EEEEEEECTTCTTCEEEEEETBEEEEESS-TTSSCEECCTTCCCTTSSSSSSSSCBCEEEEEECSSSTTEEEEEETTE-E
T ss_pred             ceeEEEECCCCCCEEEEEECCCCEEEECC-CCCCceECCCCccccccCCCccccCcceeEEEECCCCCCEEEEEcCCe-E
Confidence            4778999883 445555554454544432 2222222110    0         124788999986666777766554 5


Q ss_pred             EEEeCCCCeeEEEeec-c-c---ccEEEEEEcCC-CCeEEEEeC-----------CCcEEEEecCc-cceehccc----c
Q 021247          226 HMYDAEGKSLVTAMSG-H-A---SWVLSVDASPD-GAAITTGSS-----------DRTVKLWDLNM-RAAMQSMT----N  283 (315)
Q Consensus       226 ~~wd~~~~~~~~~~~~-~-~---~~i~~~~~~~~-~~~l~s~~~-----------d~~i~iwd~~~-~~~~~~~~----~  283 (315)
                      ...+-...+- ..+.. - .   ..+..+.++|. ...|..+..           ++...+|.... ++.+..+.    .
T Consensus       256 ~~s~D~G~tW-~~~~~~l~~~~~~~~~~i~~~p~~~~~l~~~t~~~~~~w~~~~~~~~~~~~~S~DgG~tW~~~~~glp~  334 (394)
T 3b7f_A          256 YRMDRREGVW-KRIGDAMPREVGDIGFPIVVHQRDPRTVWVFPMDGSDVWPRVSPGGKPAVYVTRDAGESWQRQDRGLPT  334 (394)
T ss_dssp             EEEETTTTEE-ECGGGGSCTTTCSCEEEEEECSSCTTCEEEEECBCCSSTTCCBCCSSCCEEEESSTTSCCEEECBTSCC
T ss_pred             EEeCCCCCcc-eECCCCCCCCCccceEEEEECCCCCCEEEEEeccCCccceeecCCCceeEEEECCCCCCceECCCCCCC
Confidence            4444333222 11111 1 1   34567888763 334444432           33344554433 23333221    1


Q ss_pred             ccc---c-eEEEEEeeCC-CEEEEEeCCCcEE
Q 021247          284 HTD---Q-VWGVSFRPLG-GRVVSVSDDKSIS  310 (315)
Q Consensus       284 ~~~---~-v~~~~~s~~~-~~l~s~~~d~~i~  310 (315)
                      ...   . ...++++|.. ..|+.++.++.|.
T Consensus       335 ~~~~~~~~~~~~~~~p~~~~~l~~g~~~g~l~  366 (394)
T 3b7f_A          335 DQAWLTVKRQAMTADAHAPVGVYFGTTGGEIW  366 (394)
T ss_dssp             SSCCCCCCTBSEEECCSSSCCEEEECTTSCEE
T ss_pred             ccccceEEEEEEEECCCCCCEEEEEeCCCeEE
Confidence            000   0 1357787753 4466666566554

>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale}

Probab=87.23  E-value=10  Score=30.45  Aligned_cols=176  Identities=7%  Similarity=0.010  Sum_probs=92.1

Q ss_pred             EeCCCCCEEEEeeC--------------CCeEEEEECCCCceeEEeeCCcccEEEEEECCCCCeEEEEe---cCCCeEEE
Q 021247           67 AAHPSGIIAASASL--------------DSFVRVFDVDTNASIATLEASPSEVWQMQFDPKGTTLAVAG---GGSASVKL  129 (315)
Q Consensus        67 ~~~~~g~~l~s~~~--------------d~~i~~w~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~---~~d~~i~~  129 (315)
                      .++++|..|.=+..              +..|+..++...+... +....    ...++|.++.++.+.   .....|..
T Consensus        59 ~i~~~g~~Iyy~~~~~~~~~~~~~~~~n~~~Iy~i~~dg~~~~~-l~~~~----~~~~s~~g~~Iy~~~~~~~~~~~Iy~  133 (302)
T 3s25_A           59 YINADKNYVYYVRNNNQKITSQTFFSYDRNSLCRIKRNGHGSTV-LDPDP----CIYASLIGNYIYYLHYDTQTATSLYR  133 (302)
T ss_dssp             EEEECSSEEEEEEECC------CCSSCCSEEEEEEETTSCCCEE-EECSC----EEEEEEETTEEEEEEESSSSCEEEEE
T ss_pred             eEEEcCCEEEEEECCCCcccccceeccCCCeEEEEeCCCCcceE-eecCC----ccEEEEeCCEEEEEeecCCCCceEEE
Confidence            44677776654432              2467888887665333 22222    225667788887765   34456666


Q ss_pred             EecCCcceeeeecCCCCCCCCCCccCCCCcceEEEEECCCCCEEEEec-CCCcEEEEEcccceeeeeecCCccceEEEEE
Q 021247          130 WDTATWNLIATLSIPRPEGLKPTDKSSSKKFVLSVAWSPDGRRIACGS-MDGTISVFDVTRAKFLHHLEGHFMPVRSLVY  208 (315)
Q Consensus       130 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~s-~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~  208 (315)
                      .++...+.. .+.-.               .+  .+++++++.|+-.+ ....|...++..+.......+   ... ..+
T Consensus       134 ~~~dGs~~~-~lt~~---------------~~--~~~~~~g~~iy~t~~g~~~Iy~~~l~g~~~~~l~~~---~~~-~~~  191 (302)
T 3s25_A          134 IRIDGEEKK-KIKNH---------------YL--FTCNTSDRYFYYNNPKNGQLYRYDTASQSEALFYDC---NCY-KPV  191 (302)
T ss_dssp             EETTSCCCE-EEESS---------------CC--CCSEEETTEEEEECTTTCCEEEEETTTTEEEEEECS---CEE-EEE
T ss_pred             EECCCCCeE-EEeCC---------------Cc--eEeeEECCEEEEEeCCCceEEEEECCCCCEEEEeCC---Ccc-cee
Confidence            666543221 12100               01  23566777776444 356788888866543322222   222 235


Q ss_pred             cCCCCcEEEEEeCC-CeEEEEeCCCCeeEEEeecccccEEEEEEcCCCCeEEEEe--CCCcEEEEecCc
Q 021247          209 SPVDPRVLFSASDD-THVHMYDAEGKSLVTAMSGHASWVLSVDASPDGAAITTGS--SDRTVKLWDLNM  274 (315)
Q Consensus       209 ~~~~~~~l~s~~~d-~~i~~wd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~--~d~~i~iwd~~~  274 (315)
                      .|.++.+..+-..+ ..|..-++.+.... .+..  ..+  ..++|++..|.-+.  ....|..-+++-
T Consensus       192 ~P~g~~iy~t~~~~~~~I~~~~ldG~~~~-~Lt~--~~~--~~~~~~g~~Iy~~~~~~~~~i~~~~~DG  255 (302)
T 3s25_A          192 VLDDTNVYYMDVNRDNAIVHVNINNPNPV-VLTE--ANI--EHYNVYGSLIFYQRGGDNPALCVVKNDG  255 (302)
T ss_dssp             EEETTEEEEEEGGGTTEEEEECSSSCCCE-ECSC--SCE--EEEEEETTEEEEEECSSSCEEEEEETTS
T ss_pred             eecCCEEEEEEcCCCcEEEEEECCCCCeE-EEeC--CCc--ceEEECCCEEEEEECCCCcEEEEEECCC
Confidence            57666555554333 46766677655432 2222  223  23677777765442  234565556653

>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A

Probab=86.64  E-value=14  Score=31.70  Aligned_cols=106  Identities=15%  Similarity=0.179  Sum_probs=59.1

Q ss_pred             ceEEEEEcCCCCcEEEEEeCCCeEEEEeCCCC---eeEEEee---------cccccEEEEEEcCC----CCeEEEEeC--
Q 021247          202 PVRSLVYSPVDPRVLFSASDDTHVHMYDAEGK---SLVTAMS---------GHASWVLSVDASPD----GAAITTGSS--  263 (315)
Q Consensus       202 ~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~---~~~~~~~---------~~~~~i~~~~~~~~----~~~l~s~~~--  263 (315)
                      ..+.|+|.|++...++.+...|.|++++..+.   ..+..+.         ........|+++|+    +.+.++-+.  
T Consensus        15 ~P~~~a~~pdG~~rl~V~er~G~i~~~~~~g~~~~~~~~~~~~~~~~g~~~~~e~Gllgia~~P~f~~n~~lYv~yt~~~   94 (463)
T 2wg3_C           15 QPVGALHSGDGSQRLFILEKEGYVKILTPEGEIFKEPYLDIHKLVQSGIKGGDERGLLSLAFHPNYKKNGKLYVSYTTNQ   94 (463)
T ss_dssp             SEEEEECCSSSSCCEEEEETTTEEEEECTTSCBCSSCSEECTTTBCCCCSSSCCCSEEEEEECTTHHHHCEEEEEEEECC
T ss_pred             CceEEEECCCCCeEEEEEeCCceEEEEeCCCCeeeeeecCCcceeccCccccCCCcceeeEeCCCCcCCCEEEEEEeCCC
Confidence            55789999855323445567899999975432   1222211         11356789999996    444343322  


Q ss_pred             C----------CcEEEEecCcc----------ceehccc--ccccceEEEEEeeCCCEEEEEeCCC
Q 021247          264 D----------RTVKLWDLNMR----------AAMQSMT--NHTDQVWGVSFRPLGGRVVSVSDDK  307 (315)
Q Consensus       264 d----------~~i~iwd~~~~----------~~~~~~~--~~~~~v~~~~~s~~~~~l~s~~~d~  307 (315)
                      +          ..|.-|.+...          +.+..+.  ........++|.|||.+.++.|+.+
T Consensus        95 ~~~~~~~~~~~~~v~r~~~~~~~~~~~d~~~~~~i~~~~~~~~~H~g~~l~fgpDG~LYv~~Gd~~  160 (463)
T 2wg3_C           95 ERWAIGPHDHILRVVEYTVSRKNPHQVDLRTARVFLEVAELHRKHLGGQLLFGPDGFLYIILGDGM  160 (463)
T ss_dssp             CSSCSSSSCEEEEEEEEEBCTTCTTSBCGGGCEEEEEEEESSSSSCEEEEEECTTSCEEEEECCTT
T ss_pred             CCcccCCcccceEEEEEEEcCCCCCccCCCCceEEEEcCCCCCcccCCcEeECCCCcEEEEeCCCC
Confidence            1          13444555321          1111111  1112356899999998878877654

>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B

Probab=85.77  E-value=25  Score=33.47  Aligned_cols=36  Identities=17%  Similarity=0.147  Sum_probs=30.6

Q ss_pred             cEEEEEEcCCCCeEEEEeCCCcEEEEecCccceehc
Q 021247          245 WVLSVDASPDGAAITTGSSDRTVKLWDLNMRAAMQS  280 (315)
Q Consensus       245 ~i~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~  280 (315)
                      .+.++...++..++++-+.|+++|+|++.++..+.+
T Consensus       237 ~~~~~~~~~~~~~lftl~~D~~LRiWsl~t~~~v~t  272 (950)
T 4gq2_M          237 TIISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCVET  272 (950)
T ss_dssp             CEEEEEEETTTTEEEEEETTCEEEEEETTTTEEEEE
T ss_pred             eEEEEeecCCCcEEEEEECCCEEEEEECCCCCeEee
Confidence            466777888888999999999999999998876654

>3q6k_A 43.2 kDa salivary protein; beta propeller, binding protein, serotonin, salivary gland, binding, ligand binging protein; HET: CIT SRO; 2.52A {Lutzomyia longipalpis} PDB: 3q6p_A* 3q6t_A*

Probab=84.47  E-value=17  Score=30.37  Aligned_cols=200  Identities=11%  Similarity=0.119  Sum_probs=109.4

Q ss_pred             ceEEEEeCCCCCEEE--EeeC-------------CCeEEEEECCCC--ceeEEeeCC------cccEEEEEEC---CC--
Q 021247           62 GVVSVAAHPSGIIAA--SASL-------------DSFVRVFDVDTN--ASIATLEAS------PSEVWQMQFD---PK--  113 (315)
Q Consensus        62 ~v~~~~~~~~g~~l~--s~~~-------------d~~i~~w~~~~~--~~~~~~~~~------~~~v~~~~~~---~~--  113 (315)
                      .|..+.+.+++.+=+  +|-.             --+|-+||+.++  +.+.++...      ......++++   |.  
T Consensus        88 sV~~v~iD~~~rLWVLDtG~~~~~~~~~~~~~~~~pkLv~~DL~t~~~~li~~y~~p~~~~~~~S~l~di~VD~~~~~~~  167 (381)
T 3q6k_A           88 SIYQPVIDDCRRLWVVDIGSVEYRSRGAKDYPSHRPAIVAYDLKQPNYPEVVRYYFPTRLVEKPTYFGGFAVDVANPKGD  167 (381)
T ss_dssp             CEEEEEECTTCEEEEEECSSCSSCSTTGGGSCCCCCEEEEEESSSTTCCEEEEEECCGGGCCCGGGEEEEEEEESCTTTT
T ss_pred             EeeEEEEcCCCcEEEEeCCCcCcCCCccccCCCCCceEEEEECCCCCceeEEEEECCHHhcccCCccceEEEecccCCCC
Confidence            567777777665332  2211             125889999999  888877543      2346677776   32  


Q ss_pred             --CCeEEEEecCCCeEEEEecCCcceeeeecCC-CCCCCCCCc----cCCCCcceEEEEECCC----CCEEEEecCCC-c
Q 021247          114 --GTTLAVAGGGSASVKLWDTATWNLIATLSIP-RPEGLKPTD----KSSSKKFVLSVAWSPD----GRRIACGSMDG-T  181 (315)
Q Consensus       114 --~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~-~~~~~~~~~----~~~~~~~i~~~~~~~~----~~~l~~~s~dg-~  181 (315)
                        +.+.+++-.....|.|||+.+++.-+..... .++......    ...-...+..|+++|+    ++.|.-....+ .
T Consensus       168 c~~~~aYItD~~~~gLIVydl~~~~swRv~~~~~~pd~~~~~~i~G~~~~~~~Gi~gIaLsp~~~~~~~~LYf~plss~~  247 (381)
T 3q6k_A          168 CSETFVYITNFLRGALFIYDHKKQDSWNVTHPTFKAERPTKFDYGGKEYEFKAGIFGITLGDRDSEGNRPAYYLAGSAIK  247 (381)
T ss_dssp             SCSEEEEEEETTTTEEEEEETTTTEEEEEECGGGSCCSCEEEEETTEEEEECCCEEEEEECCCCTTSCCEEEEEESSCSE
T ss_pred             CCccEEEEEcCCCCcEEEEECCCCcEEEEccCCCccccCcceEECCEEeEeccCceEEEecCCcCCCCeEEEEEECCCCc
Confidence              3455566666789999999987665444210 011000000    0011235789999997    67776554443 3


Q ss_pred             EEEEE---cccceeeee--ecCCc---cceEEEEEcCCCCcEEEEEeCCCeEEEEeCCC-C---eeEEEe--ecccccEE
Q 021247          182 ISVFD---VTRAKFLHH--LEGHF---MPVRSLVYSPVDPRVLFSASDDTHVHMYDAEG-K---SLVTAM--SGHASWVL  247 (315)
Q Consensus       182 i~i~d---~~~~~~~~~--~~~~~---~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~-~---~~~~~~--~~~~~~i~  247 (315)
                      ++-..   |+.......  ..+..   ..-..++..+.++.++++--....|..|+.++ .   .....+  ...-.++.
T Consensus       248 ly~V~T~~L~~~~~~~~v~~~G~kg~~s~~~~~~~D~~~G~ly~~~~~~~aI~~w~~~~~~~~~~n~~~l~~d~~l~~pd  327 (381)
T 3q6k_A          248 VYSVNTKELKQKGGKLNPELLGNRGKYNDAIALAYDPKTKVIFFAEANTKQVSCWNTQKMPLRMKNTDVVYTSSRFVFGT  327 (381)
T ss_dssp             EEEEEHHHHSSTTCCCCCEEEEECCTTCCEEEEEECTTTCEEEEEESSSSEEEEEETTSCSBCGGGEEEEEECTTCCSEE
T ss_pred             EEEEEHHHhhCcchhhceEEeeecCCCCCcceEEEeCCCCeEEEEeccCCeEEEEeCCCCccccCceEEEEECCCccccC
Confidence            33332   121111111  11112   12234455444677777778889999999876 1   111111  22445677


Q ss_pred             EEEEcCCCCeEEEE
Q 021247          248 SVDASPDGAAITTG  261 (315)
Q Consensus       248 ~~~~~~~~~~l~s~  261 (315)
                      .+.+.++|.+.+..
T Consensus       328 ~~~i~~~g~Lwv~s  341 (381)
T 3q6k_A          328 DISVDSKGGLWFMS  341 (381)
T ss_dssp             EEEECTTSCEEEEE
T ss_pred             eEEECCCCeEEEEE
Confidence            88877777654444

>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A

Probab=83.67  E-value=27  Score=32.07  Aligned_cols=263  Identities=11%  Similarity=0.121  Sum_probs=138.7

Q ss_pred             ccceEEEEEeecCCCCCcEEEEeeCCCcEEEEcCCCCcceeec-cccccceEEEEeCCCCCEEEEeeCCCeEEEEECCCC
Q 021247           14 EESVWAVTWVPATETRPALLLTGSLDETVKLWRPDDMQLERTN-TGHCLGVVSVAAHPSGIIAASASLDSFVRVFDVDTN   92 (315)
Q Consensus        14 ~~~v~~v~~~~~~~~~~~~l~sgs~d~~v~~w~~~~~~~~~~~-~~h~~~v~~~~~~~~g~~l~s~~~d~~i~~w~~~~~   92 (315)
                      ...|+++.--.     ...+-.|..+| +..||....+..... ......|.++....+|.+. .++.+| +..+|..+.
T Consensus        21 ~n~V~~I~qD~-----~G~lWigT~~G-L~ryDG~~~~~~~~~~~~~~~~i~~i~~d~~g~lW-igT~~G-l~~yd~~~~   92 (758)
T 3ott_A           21 ASVVSCFLQDS-----EGLIWIGSNKG-LFSYDGYSTQQHFTYGENNNTRIYCGVIIDNTYLY-MGTDNG-ILVYNYRAD   92 (758)
T ss_dssp             CCCEEEEEECT-----TSCEEEEESSC-EEEECSSCEEECSCTTSTTSSCEEEEEEETTTEEE-EEETTE-EEEEETTTT
T ss_pred             cceEEEEEECC-----CCCEEEEECCC-ccccCCCceEEEEccCCCCCceEEEEEEcCCCcEE-EEeCCC-eEEEeCCCC
Confidence            35788886433     23577777777 445764332211111 1123468888777777544 445554 788998765


Q ss_pred             ceeEEeeCCcccEEEEEECCCCCeEEEEecCCCeEEEEecCCcceeeeecCCCCCCCCCCccCCCCcceEEEEECCCCCE
Q 021247           93 ASIATLEASPSEVWQMQFDPKGTTLAVAGGGSASVKLWDTATWNLIATLSIPRPEGLKPTDKSSSKKFVLSVAWSPDGRR  172 (315)
Q Consensus        93 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~  172 (315)
                      ............|..+.. .++. +.++ ..+ -+..||..+.+.. .+... ...       .....|.++...++|..
T Consensus        93 ~f~~~~~~~~~~i~~i~~-~~g~-lWig-t~~-Gl~~~~~~~~~~~-~~~~~-~~~-------l~~~~i~~i~~d~~g~l  159 (758)
T 3ott_A           93 RYEQPETDFPTDVRTMAL-QGDT-LWLG-ALN-GLYTYQLQSRKLT-SFDTR-RNG-------LPNNTIYSIIRTKDNQI  159 (758)
T ss_dssp             EECCCSCCCCSCEEEEEE-ETTE-EEEE-ETT-EEEEEETTTCCEE-EECHH-HHC-------CSCSCEEEEEECTTCCE
T ss_pred             EEECcccCCCceEEEEEe-cCCc-EEEE-cCC-cceeEeCCCCeEE-EeccC-CCC-------cCCCeEEEEEEcCCCCE
Confidence            322111112234666544 3443 4443 333 6778887654432 22100 000       11234778888777765


Q ss_pred             EEEecCCCcEEEEEcccceeeeee-cC----CccceEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCeeEEEeecccccEE
Q 021247          173 IACGSMDGTISVFDVTRAKFLHHL-EG----HFMPVRSLVYSPVDPRVLFSASDDTHVHMYDAEGKSLVTAMSGHASWVL  247 (315)
Q Consensus       173 l~~~s~dg~i~i~d~~~~~~~~~~-~~----~~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~i~  247 (315)
                      .+ |+.+ .+..+|..+++..... ..    ....|.++...+ ++..|..|+. +-+..+|..+++......-....|.
T Consensus       160 Wi-gt~~-Gl~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~-~~~~lWigt~-~Gl~~~~~~~~~~~~~~~l~~~~i~  235 (758)
T 3ott_A          160 YV-GTYN-GLCRYIPSNGKFEGIPLPVHSSQSNLFVNSLLEDT-TRQCVWIGTE-GYLFQYFPSTGQIKQTEAFHNNSIK  235 (758)
T ss_dssp             EE-EETT-EEEEEETTTTEEEEECCCCCTTCSSCCEEEEEEET-TTTEEEEEEE-EEEEEEETTTTEEEEEEEEEEEEEE
T ss_pred             EE-EeCC-CHhhCccCCCceEEecCCCccccccceeEEEEEEC-CCCEEEEEEC-CCCeEEcCCCCeEEeccCCCCCeEE
Confidence            54 4444 5778887766543211 11    122477777665 3343334443 4588899877654332211234588


Q ss_pred             EEEEcCCCCeEEEEeCCCcEEEEecCccceehcc-------cccccceEEEEEeeCCCEEEEE
Q 021247          248 SVDASPDGAAITTGSSDRTVKLWDLNMRAAMQSM-------TNHTDQVWGVSFRPLGGRVVSV  303 (315)
Q Consensus       248 ~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~-------~~~~~~v~~~~~s~~~~~l~s~  303 (315)
                      ++..+++|.+.+ |+.+| +.+++..........       .-....|.++....+|...+..
T Consensus       236 ~i~~d~~g~lWi-gT~~G-l~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~D~~g~lWiGT  296 (758)
T 3ott_A          236 SLALDGNGDLLA-GTDNG-LYVYHNDTTPLQHIIHDSRNIQSLTNNIIWNIFADQEHNIWLGT  296 (758)
T ss_dssp             EEEECTTCCEEE-EETTE-EEEECCTTSCCEEECCCTTCTTSCSCSCEEEEEECTTCCEEEEE
T ss_pred             EEEEcCCCCEEE-EeCCc-eeEEecCCCcEEEEEcCCCCcCcCCcCeEEEEEEcCCCCEEEEe
Confidence            888888877544 45444 778887654322110       0112458888777777655443

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	315
d1vyhc1	317	b.69.4.1 (C:92-408) Platelet-activating factor ace	2e-36
d1vyhc1	317	b.69.4.1 (C:92-408) Platelet-activating factor ace	1e-27
d1tbga_	340	b.69.4.1 (A:) beta1-subunit of the signal-transduc	6e-28
d1tbga_	340	b.69.4.1 (A:) beta1-subunit of the signal-transduc	3e-27
d1tbga_	340	b.69.4.1 (A:) beta1-subunit of the signal-transduc	5e-15
d1tbga_	340	b.69.4.1 (A:) beta1-subunit of the signal-transduc	2e-13
d1tbga_	340	b.69.4.1 (A:) beta1-subunit of the signal-transduc	1e-05
d1erja_	388	b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea	5e-25
d1erja_	388	b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea	8e-19
d1erja_	388	b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea	5e-16
d1sq9a_	393	b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake	5e-22
d1sq9a_	393	b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake	8e-12
d1sq9a_	393	b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake	2e-11
d2ovrb2	342	b.69.4.1 (B:2365-2706) F-box/WD repeat-containing	3e-21
d2ovrb2	342	b.69.4.1 (B:2365-2706) F-box/WD repeat-containing	2e-20
d1p22a2	293	b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be	1e-18
d1p22a2	293	b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be	8e-07
d1nexb2	355	b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker'	1e-18
d1nexb2	355	b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker'	1e-11
d1nexb2	355	b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker'	0.001
d1yfqa_	342	b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake	2e-18
d1yfqa_	342	b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake	8e-09
d1yfqa_	342	b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake	1e-08
d1yfqa_	342	b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake	1e-04
d1jmxb_	346	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	2e-17
d1jmxb_	346	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	7e-13
d1jmxb_	346	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	2e-09
d1jmxb_	346	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	4e-09
d1jmxb_	346	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	8e-08
d1gxra_	337	b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum	1e-16
d1gxra_	337	b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum	4e-10
d1gxra_	337	b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum	2e-09
d1gxra_	337	b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum	6e-08
d1qksa2	432	b.70.2.1 (A:136-567) C-terminal (heme d1) domain o	3e-14
d1qksa2	432	b.70.2.1 (A:136-567) C-terminal (heme d1) domain o	5e-14
d1qksa2	432	b.70.2.1 (A:136-567) C-terminal (heme d1) domain o	1e-12
d1qksa2	432	b.70.2.1 (A:136-567) C-terminal (heme d1) domain o	1e-08
d1k32a3	360	b.69.9.1 (A:320-679) Tricorn protease domain 2 {Ar	2e-13
d1k32a3	360	b.69.9.1 (A:320-679) Tricorn protease domain 2 {Ar	3e-13
d1k32a3	360	b.69.9.1 (A:320-679) Tricorn protease domain 2 {Ar	1e-12
d1k32a3	360	b.69.9.1 (A:320-679) Tricorn protease domain 2 {Ar	1e-08
d1mdah_	368	b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {	2e-13
d1mdah_	368	b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {	2e-05
d1mdah_	368	b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {	2e-05
d1pbyb_	337	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	5e-13
d1pbyb_	337	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	1e-09
d1pbyb_	337	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	7e-09
d1pgua2	287	b.69.4.1 (A:327-613) Actin interacting protein 1 {	1e-12
d1pgua2	287	b.69.4.1 (A:327-613) Actin interacting protein 1 {	9e-06
d1pgua2	287	b.69.4.1 (A:327-613) Actin interacting protein 1 {	2e-05
d1pgua2	287	b.69.4.1 (A:327-613) Actin interacting protein 1 {	3e-05
d1pgua2	287	b.69.4.1 (A:327-613) Actin interacting protein 1 {	0.002
d1nr0a1	311	b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne	1e-12
d1nr0a1	311	b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne	1e-07
d1nr0a1	311	b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne	2e-07
d1nr0a1	311	b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne	2e-06
d1nr0a1	311	b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne	5e-06
d1k8kc_	371	b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1	2e-12
d1k8kc_	371	b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1	3e-12
d1k8kc_	371	b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1	2e-09
d1k8kc_	371	b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1	0.004
d2bbkh_	355	b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {	2e-11
d2bbkh_	355	b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {	9e-11
d1nr0a2	299	b.69.4.1 (A:313-611) Actin interacting protein 1 {	4e-11
d1nr0a2	299	b.69.4.1 (A:313-611) Actin interacting protein 1 {	4e-10
d1nr0a2	299	b.69.4.1 (A:313-611) Actin interacting protein 1 {	1e-04
d1hzua2	426	b.70.2.1 (A:118-543) C-terminal (heme d1) domain o	3e-10
d1hzua2	426	b.70.2.1 (A:118-543) C-terminal (heme d1) domain o	4e-09
d1hzua2	426	b.70.2.1 (A:118-543) C-terminal (heme d1) domain o	5e-09
d1hzua2	426	b.70.2.1 (A:118-543) C-terminal (heme d1) domain o	2e-06
d1hzua2	426	b.70.2.1 (A:118-543) C-terminal (heme d1) domain o	6e-06
d1hzua2	426	b.70.2.1 (A:118-543) C-terminal (heme d1) domain o	7e-04
d1qnia2	441	b.69.3.1 (A:10-450) Nitrous oxide reductase, N-ter	4e-10
d1qnia2	441	b.69.3.1 (A:10-450) Nitrous oxide reductase, N-ter	8e-05
d1pgua1	325	b.69.4.1 (A:2-326) Actin interacting protein 1 {Ba	8e-10
d1pgua1	325	b.69.4.1 (A:2-326) Actin interacting protein 1 {Ba	1e-08
d1l0qa2	301	b.69.2.3 (A:1-301) Surface layer protein {Archaeon	2e-07
d1l0qa2	301	b.69.2.3 (A:1-301) Surface layer protein {Archaeon	1e-06
d1l0qa2	301	b.69.2.3 (A:1-301) Surface layer protein {Archaeon	8e-06
d1l0qa2	301	b.69.2.3 (A:1-301) Surface layer protein {Archaeon	1e-05
d1l0qa2	301	b.69.2.3 (A:1-301) Surface layer protein {Archaeon	3e-04
d1ri6a_	333	b.69.11.1 (A:) Putative isomerase YbhE {Escherichi	7e-07
d1ri6a_	333	b.69.11.1 (A:) Putative isomerase YbhE {Escherichi	0.002
d1jofa_	365	b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactoniz	2e-05

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score =  131 bits (329), Expect = 2e-36
 Identities = 73/322 (22%), Positives = 129/322 (40%), Gaps = 37/322 (11%)

Query: 11  NAHEESVWAVTWVPATETRPALLLTGSLDETVKLWRPDDMQLERTNTGHCLGVVSVAAHP 70
           + H   V  V + P       ++++ S D T+K+W  +    ERT  GH   V  ++   
Sbjct: 14  SGHRSPVTRVIFHPVFS----VMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDH 69

Query: 71  SGIIAASASLDSFVRVFDVDTNASIATLEASPSEVWQMQFDPKGTTLAVAGGGSASVKLW 130
           SG + AS S D  ++++D      I T+      V  +   P G  + V+     ++K+W
Sbjct: 70  SGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHI-VSASRDKTIKMW 128

Query: 131 DTATWNLIATLSIPRPEGLKPTDKSSSKKFVLSVAWSPDGRRIACGSMDGTISVFDVTRA 190
           +  T   + T +               +++V  V  + DG  IA  S D T+ V+ V   
Sbjct: 129 EVQTGYCVKTFT-------------GHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATK 175

Query: 191 KFLHHLEGHFMPVRSL-------------------VYSPVDPRVLFSASDDTHVHMYDAE 231
           +    L  H   V  +                     S      L S S D  + M+D  
Sbjct: 176 ECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVS 235

Query: 232 GKSLVTAMSGHASWVLSVDASPDGAAITTGSSDRTVKLWDLNMRAAMQSMTNHTDQVWGV 291
               +  + GH +WV  V     G  I + + D+T+++WD   +  M+++  H   V  +
Sbjct: 236 TGMCLMTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLNAHEHFVTSL 295

Query: 292 SFRPLGGRVVSVSDDKSISLYE 313
            F      VV+ S D+++ ++E
Sbjct: 296 DFHKTAPYVVTGSVDQTVKVWE 317

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score =  107 bits (267), Expect = 1e-27
 Identities = 64/293 (21%), Positives = 111/293 (37%), Gaps = 36/293 (12%)

Query: 43  KLWRPDDMQLERTNTGHCLGVVSVAAHPSGIIAASASLDSFVRVFDVDTNASIATLEASP 102
           K W P     +   +GH   V  V  HP   +  SAS D+ ++V+D +T     TL+   
Sbjct: 1   KEWIPR-PPEKYALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHT 59

Query: 103 SEVWQMQFDPKGTTLAVAGGGSASVKLWDTATWNLIATLSIPRPEGLKPTDKSSSKKFVL 162
             V  + FD  G                  +    +                      V 
Sbjct: 60  DSVQDISFDHSGK--------------LLASCSADMTIKLWDFQGFECIRTMHGHDHNVS 105

Query: 163 SVAWSPDGRRIACGSMDGTISVFDVTRAKFLHHLEGHFMPVRSLVYSPVDPRVLFSASDD 222
           SV+  P+G  I   S D TI +++V     +    GH   VR +  +  D  ++ S S+D
Sbjct: 106 SVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQ-DGTLIASCSND 164

Query: 223 THVHMYDAEGKSLVTAMSGHASWVLSVD--------------------ASPDGAAITTGS 262
             V ++    K     +  H   V  +                     +   G  + +GS
Sbjct: 165 QTVRVWVVATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGS 224

Query: 263 SDRTVKLWDLNMRAAMQSMTNHTDQVWGVSFRPLGGRVVSVSDDKSISLYEYS 315
            D+T+K+WD++    + ++  H + V GV F   G  ++S +DDK++ +++Y 
Sbjct: 225 RDKTIKMWDVSTGMCLMTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDYK 277

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

 Score =  109 bits (271), Expect = 6e-28
 Identities = 47/297 (15%), Positives = 91/297 (30%), Gaps = 34/297 (11%)

Query: 49  DMQLERTNTGHCLGVVSVAAHPSGIIAASASLDSFVRVFDVDTNASIATLEASPSEVWQM 108
            M+  RT  GH   + ++       +  SAS D  + ++D  T   +  +    S V   
Sbjct: 44  QMRTRRTLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTC 103

Query: 109 QFDPKGTTLAVAGGGSASVKLWDTATWNLIATLSIPRPEGLKPTDKSSSKKF-------- 160
            + P G  +A  G  +             +             +                
Sbjct: 104 AYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGD 163

Query: 161 -----------------------VLSVAWSPDGRRIACGSMDGTISVFDVTRAKFLHHLE 197
                                  V+S++ +PD R    G+ D +  ++DV          
Sbjct: 164 TTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFT 223

Query: 198 GHFMPVRSLVYSPVDPRVLFSASDDTHV--HMYDAEGKSLVTAMSGHASWVLSVDASPDG 255
           GH   + ++ + P +     + SDD         A+ + +  +       + SV  S  G
Sbjct: 224 GHESDINAICFFP-NGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSG 282

Query: 256 AAITTGSSDRTVKLWDLNMRAAMQSMTNHTDQVWGVSFRPLGGRVVSVSDDKSISLY 312
             +  G  D    +WD         +  H ++V  +     G  V + S D  + ++
Sbjct: 283 RLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIW 339

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

 Score =  106 bits (265), Expect = 3e-27
 Identities = 58/305 (19%), Positives = 106/305 (34%), Gaps = 64/305 (20%)

Query: 13  HEESVWAVTWVPATETRPALLLTGSLDETVKLWRPDDMQLERTNTGHCLGVVSVAAHPSG 72
           H   ++A+ W   +     LL++ S D  + +W                 V++ A  PSG
Sbjct: 54  HLAKIYAMHWGTDSR----LLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSG 109

Query: 73  IIAASASLDSFVRVFDVDTNASIATLEASPSEVWQMQFDPKG------------------ 114
              A   LD+   ++++ T      +    +         +                   
Sbjct: 110 NYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCALW 169

Query: 115 --------------------------TTLAVAGGGSASVKLWDTATWNLIATLSIPRPEG 148
                                     T L V+G   AS KLWD        T +      
Sbjct: 170 DIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGH---- 225

Query: 149 LKPTDKSSSKKFVLSVAWSPDGRRIACGSMDGTISVFDVTRAKFLHHLEGHFM--PVRSL 206
                    +  + ++ + P+G   A GS D T  +FD+   + L       +   + S+
Sbjct: 226 ---------ESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSV 276

Query: 207 VYSPVDPRVLFSASDDTHVHMYDAEGKSLVTAMSGHASWVLSVDASPDGAAITTGSSDRT 266
            +S    R+L +  DD + +++DA        ++GH + V  +  + DG A+ TGS D  
Sbjct: 277 SFSK-SGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSF 335

Query: 267 VKLWD 271
           +K+W+
Sbjct: 336 LKIWN 340

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 72.5 bits (176), Expect = 5e-15
 Identities = 27/123 (21%), Positives = 46/123 (37%), Gaps = 7/123 (5%)

Query: 11  NAHEESVWAVTWVPATETRPALLLTGSLDETVKLWRPDDMQLERTNTGHCL--GVVSVAA 68
             HE  + A+ + P          TGS D T +L+     Q   T +   +  G+ SV+ 
Sbjct: 223 TGHESDINAICFFPNGN----AFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSF 278

Query: 69  HPSGIIAASASLDSFVRVFDVDTNASIATLEASPSEVWQMQFDPKGTTLAVAGGGSASVK 128
             SG +  +   D    V+D         L    + V  +     G  +A  G   + +K
Sbjct: 279 SKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVA-TGSWDSFLK 337

Query: 129 LWD 131
           +W+
Sbjct: 338 IWN 340

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 67.5 bits (163), Expect = 2e-13
 Identities = 38/198 (19%), Positives = 66/198 (33%), Gaps = 44/198 (22%)

Query: 161 VLSVAWSPDGRRIACGSMDGTISVFDVTRAKFLHHLEGHFMPVRSLVYSPVDPRVLFSAS 220
           + ++ W  D R +   S DG + ++D      +H +      V +  Y+P    V     
Sbjct: 58  IYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGL 117

Query: 221 DDTHVHM--------------------------------------------YDAEGKSLV 236
           D+                                                 +D E     
Sbjct: 118 DNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCALWDIETGQQT 177

Query: 237 TAMSGHASWVLSVDASPDGAAITTGSSDRTVKLWDLNMRAAMQSMTNHTDQVWGVSFRPL 296
           T  +GH   V+S+  +PD     +G+ D + KLWD+      Q+ T H   +  + F P 
Sbjct: 178 TTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPN 237

Query: 297 GGRVVSVSDDKSISLYEY 314
           G    + SDD +  L++ 
Sbjct: 238 GNAFATGSDDATCRLFDL 255

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 44.0 bits (102), Expect = 1e-05
 Identities = 22/102 (21%), Positives = 45/102 (44%), Gaps = 1/102 (0%)

Query: 188 TRAKFLHHLEGHFMPVRSLVYSPVDPRVLFSASDDTHVHMYDAEGKSLVTAMSGHASWVL 247
            + +    L GH   + ++ +   D R+L SAS D  + ++D+   + V A+   +SWV+
Sbjct: 43  IQMRTRRTLRGHLAKIYAMHWGT-DSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVM 101

Query: 248 SVDASPDGAAITTGSSDRTVKLWDLNMRAAMQSMTNHTDQVW 289
           +   +P G  +  G  D    +++L  R     ++       
Sbjct: 102 TCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHT 143

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score =  101 bits (251), Expect = 5e-25
 Identities = 72/345 (20%), Positives = 126/345 (36%), Gaps = 63/345 (18%)

Query: 13  HEESVWAVTWVPATETRPALLLTGSLDETVKLWRPDDMQLERTNTGHC------------ 60
           H   V  V +    E     L TG  ++T +++R  D  L    +               
Sbjct: 61  HTSVVCCVKFSNDGE----YLATGC-NKTTQVYRVSDGSLVARLSDDSAANKDPENLNTS 115

Query: 61  ------LGVVSVAAHPSGIIAASASLDSFVRVFDVDTNASIATLEASPSEVWQMQFDPKG 114
                 L + SV   P G   A+ + D  +R++D++    +  L+    +++ + + P G
Sbjct: 116 SSPSSDLYIRSVCFSPDGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSG 175

Query: 115 TTLAVAGGGSASVKLWDTATWNLIATLSIPRPEGLKPTDKSSSKKFVLSVAWSPDGRRIA 174
               V+G G  +V++WD  T                    S             DG+ IA
Sbjct: 176 DK-LVSGSGDRTVRIWDLRTGQ-------------CSLTLSIEDGVTTVAVSPGDGKYIA 221

Query: 175 CGSMDGTISVFDVTRAKFLHHLE-------GHFMPVRSLVYSPVDPRVLFSASDDTHVHM 227
            GS+D  + V+D      +  L+       GH   V S+V++  D + + S S D  V +
Sbjct: 222 AGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTR-DGQSVVSGSLDRSVKL 280

Query: 228 YDAEGKSLVTAMSGHAS------------WVLSVDASPDGAAITTGSSDRTVKLWDLNMR 275
           ++ +  +  +      S            +VLSV  + +   I +GS DR V  WD    
Sbjct: 281 WNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSG 340

Query: 276 AAMQSMTNHTDQVWGV------SFRPLGGRVVSVSDDKSISLYEY 314
             +  +  H + V  V      S  P      + S D    +++Y
Sbjct: 341 NPLLMLQGHRNSVISVAVANGSSLGPEYNVFATGSGDCKARIWKY 385

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 84.1 bits (206), Expect = 8e-19
 Identities = 64/278 (23%), Positives = 109/278 (39%), Gaps = 67/278 (24%)

Query: 103 SEVWQMQFDPKGTTLAVAGGGSASVKLWDTATWNLIATLS-----IPRPEGLKPTDKSSS 157
           S V  ++F   G  LA     +   +++  +  +L+A LS        PE L  +   SS
Sbjct: 63  SVVCCVKFSNDGEYLATGCNKT--TQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSS 120

Query: 158 KKFVLSVAWSPDGRRIACGSMDGTISVFDVTRAKFLHHLEGHFM---------------- 201
             ++ SV +SPDG+ +A G+ D  I ++D+   K +  L+GH                  
Sbjct: 121 DLYIRSVCFSPDGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVS 180

Query: 202 -------------------------PVRSLVYSPVDPRVLFSASDDTHVHMYDAEG---- 232
                                     V ++  SP D + + + S D  V ++D+E     
Sbjct: 181 GSGDRTVRIWDLRTGQCSLTLSIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLV 240

Query: 233 ---KSLVTAMSGHASWVLSVDASPDGAAITTGSSDRTVKLWDL------------NMRAA 277
               S   + +GH   V SV  + DG ++ +GS DR+VKLW+L            N    
Sbjct: 241 ERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTC 300

Query: 278 MQSMTNHTDQVWGVSFRPLGGRVVSVSDDKSISLYEYS 315
             +   H D V  V+       ++S S D+ +  ++  
Sbjct: 301 EVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKK 338

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 75.6 bits (184), Expect = 5e-16
 Identities = 33/176 (18%), Positives = 56/176 (31%), Gaps = 27/176 (15%)

Query: 33  LLTGSLDETVKLWRPDDMQLERT-------NTGHCLGVVSVAAHPSGIIAASASLDSFVR 85
           +  GSLD  V++W  +   L           TGH   V SV     G    S SLD  V+
Sbjct: 220 IAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVK 279

Query: 86  VFDVDTNASIA------------TLEASPSEVWQMQFDPKGTTLAVAGGGSASVKLWDTA 133
           ++++    + +            T       V  +        + ++G     V  WD  
Sbjct: 280 LWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYI-LSGSKDRGVLFWDKK 338

Query: 134 TWNLIATLSIPRPEGLKPTDKSSSKKFVLSVAWSPDGRRIACGSMDGTISVFDVTR 189
           + N +  L           +   S       +  P+    A GS D    ++   +
Sbjct: 339 SGNPLLMLQ-------GHRNSVISVAVANGSSLGPEYNVFATGSGDCKARIWKYKK 387

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 93.0 bits (229), Expect = 5e-22
 Identities = 49/355 (13%), Positives = 109/355 (30%), Gaps = 66/355 (18%)

Query: 8   SVENAHEESVWAVTWVPATETRPALLLTGSLDETVKLWRPDDMQLERTNT------GHCL 61
           +   AH+  +++V+   +        ++ S D  +K+W    +  E           H  
Sbjct: 8   NAGKAHDADIFSVSACNSF------TVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKS 61

Query: 62  GVVSVAA-------HPSGIIAASASLDSFVRVFDVDTNASIATL----------EASPSE 104
           G+  V              + A+ S    +  + +        +          +     
Sbjct: 62  GLHHVDVLQAIERDAFELCLVATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHS 121

Query: 105 VWQMQFDPKGTTLA----VAGGGSASVKLWDT-----ATWNLIATLSIPRPEGLKPTDKS 155
            W +++      L     VA     +  +W        + +L    S             
Sbjct: 122 FWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSLTLNWSPTLELQGTVESPM 181

Query: 156 SSKKFVLSVAWSPDGRRIACGSMDGTISVFDVTRAKFLHHL------EGHFMPVRSLVYS 209
           +  +F  SV  S  G  IA G  +GT+ + +++  + L++         +   +RS+ +S
Sbjct: 182 TPSQFATSVDISERGL-IATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFS 240

Query: 210 PVDPRVLFSASDDTHVHMY----------------DAEGKSLVTAMSGHASWVLSVDASP 253
           P    +   A D                                    H+SWV+S+  + 
Sbjct: 241 PQGSLL-AIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFND 299

Query: 254 DGAAITTGSSDRTVKLWDLNMRAAMQSMTNHTDQV----WGVSFRPLGGRVVSVS 304
            G  + +   D  ++ WD+  +  + ++  H D +      ++    G  +    
Sbjct: 300 SGETLCSAGWDGKLRFWDVKTKERITTLNMHCDDIEIEEDILAVDEHGDSLAEPG 354

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 62.9 bits (151), Expect = 8e-12
 Identities = 36/260 (13%), Positives = 78/260 (30%), Gaps = 42/260 (16%)

Query: 93  ASIATLEASPSEVWQMQFDPKGTTLAVAGGGSASVKLWDTATWNLIATLSIPRPEGLKPT 152
           A+    +A  ++++ +      T   V+  G   +K+WD    +            +  +
Sbjct: 5   ATANAGKAHDADIFSVSACNSFT---VSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKS 61

Query: 153 DKSSSKKFVLSVAWSPDGRRIACGSMDGTISVFDVTRAKFLHHLEGHFMPVRSLVYSPVD 212
                         + +   +A  S  G +  + +TR      +    + +         
Sbjct: 62  GLHHVDVLQAIERDAFELCLVATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHS 121

Query: 213 --------------PRVLFSASDDTHVHMYDA------------------EGKSLVTAMS 240
                            L +       +++                    E +  V +  
Sbjct: 122 FWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSLTLNWSPTLELQGTVESPM 181

Query: 241 GHASWVLSVDASPDGAAITTGSSDRTVKLWDLNMRAAM------QSMTNHTDQVWGVSFR 294
             + +  SVD S  G  I TG ++ TV++ +L+    +       SM N+++ +  V F 
Sbjct: 182 TPSQFATSVDISERG-LIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFS 240

Query: 295 PLGGRVVSVSDDKSISLYEY 314
           P G  +    D  S      
Sbjct: 241 PQGSLLAIAHDSNSFGCITL 260

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 61.8 bits (148), Expect = 2e-11
 Identities = 43/289 (14%), Positives = 97/289 (33%), Gaps = 48/289 (16%)

Query: 13  HEESVWAVTWVPATETRPA-LLLTGSLDETVKLWRPDDMQLE------------------ 53
            + S WA+ W  + +   +  L+   +  T  +W+      E                  
Sbjct: 118 KKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSLTLNWSPTLELQGTV 177

Query: 54  RTNTGHCLGVVSVAAHPSGIIAASASLDSFVRVFD------VDTNASIATLEASPSEVWQ 107
            +         SV     G+IA +   +  V++ +      +    S  ++  + + +  
Sbjct: 178 ESPMTPSQFATSVDISERGLIA-TGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRS 236

Query: 108 MQFDPKGTTLAVAG--GGSASVKLWDTATWNLIATLSIPRPEGLKPTDKSSSKKFVLSVA 165
           ++F P+G+ LA+A        + L++T     I +LS+P         + +   +V+S++
Sbjct: 237 VKFSPQGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLS 296

Query: 166 WSPDGRRIACGSMDGTISVFDVTRAKFLHHLEGHFMPVRSLVYSPVDPRVLFSASDDTHV 225
           ++  G  +     DG +  +DV   + +  L  H   +                      
Sbjct: 297 FNDSGETLCSAGWDGKLRFWDVKTKERITTLNMHCDDIEIEEDILA-------------- 342

Query: 226 HMYDAEGKSLVTAMSGHASW----VLSVDASPDGAAITTGSSDRTVKLW 270
              D  G SL         +      S   +    ++     DR+++ +
Sbjct: 343 --VDEHGDSLAEPGVFDVKFLKKGWRSGMGADLNESLCCVCLDRSIRWF 389

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 90.3 bits (222), Expect = 3e-21
 Identities = 56/294 (19%), Positives = 105/294 (35%), Gaps = 29/294 (9%)

Query: 45  WRPDDMQLERTNTGHCLGVVSVAAHPSGIIAASASLDSFVRVFDVDTNASIATLEASPSE 104
           WR  +++  +   GH   V++      G    S S D+ ++V+   T   + TL      
Sbjct: 1   WRRGELKSPKVLKGHDDHVIT-CLQFCGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGG 59

Query: 105 VWQMQFDPKGTTLAVAGG--GSASVKLWDTATWNLIATLSIPRPEGLKPTDKSSSKKFVL 162
           VW  Q                  + +  +        T ++      +    S S+   L
Sbjct: 60  VWSSQMRDNIIISGSTDRTLKVWNAETGECIHTLYGHTSTVRCMHLHEKRVVSGSRDATL 119

Query: 163 SVAWSPDGR--------------------RIACGSMDGTISVFDVTRAKFLHHLEGHFMP 202
            V     G+                    R+  G+ D  + V+D      LH L+GH   
Sbjct: 120 RVWDIETGQCLHVLMGHVAAVRCVQYDGRRVVSGAYDFMVKVWDPETETCLHTLQGHTNR 179

Query: 203 VRSLVYSPVDPRVLFSASDDTHVHMYDAEGKSLVTAMSGHASWVLSVDASPDGAAITTGS 262
           V        D   + S S DT + ++D E  + +  ++GH S    +        + +G+
Sbjct: 180 VY---SLQFDGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGM--ELKDNILVSGN 234

Query: 263 SDRTVKLWDLNMRAAMQSMTNHTDQV-WGVSFRPLGGRVVSVSDDKSISLYEYS 315
           +D TVK+WD+     +Q++             +     V++ SDD ++ L++  
Sbjct: 235 ADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFNKNFVITSSDDGTVKLWDLK 288

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 87.9 bits (216), Expect = 2e-20
 Identities = 54/265 (20%), Positives = 102/265 (38%), Gaps = 29/265 (10%)

Query: 18  WAVTWVPATETRPALLLTGSLDETVKLWRPDDMQLERTNTGHCLGVVSVAAHPSGIIAAS 77
              + V         +++GS D T+++W  +  Q      GH   V  V      +   S
Sbjct: 95  GHTSTVRCMHLHEKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQYDGRRV--VS 152

Query: 78  ASLDSFVRVFDVDTNASIATLEASPSEVWQMQFDPKGTTLAVAGGGSASVKLWDTATWNL 137
            + D  V+V+D +T   + TL+   + V+ +QFD       V+G    S+++WD  T N 
Sbjct: 153 GAYDFMVKVWDPETETCLHTLQGHTNRVYSLQFDGI---HVVSGSLDTSIRVWDVETGNC 209

Query: 138 IATLSIPRPEGLKPTDKSSSKKFVLSVAWSPDGRRIACGSMDGTISVFDVTRAKFLHHLE 197
           I TL+  +                L+         +  G+ D T+ ++D+   + L  L+
Sbjct: 210 IHTLTGHQS---------------LTSGMELKDNILVSGNADSTVKIWDIKTGQCLQTLQ 254

Query: 198 GHFMPVRSLVYSPVDPRVLFSASDDTHVHMYDAEGKSLV-----TAMSGHASWVLSVDAS 252
           G      ++     +   + ++SDD  V ++D +    +         G    V  + AS
Sbjct: 255 GPNKHQSAVTCLQFNKNFVITSSDDGTVKLWDLKTGEFIRNLVTLESGGSGGVVWRIRAS 314

Query: 253 PDGAAITTGSSDRT----VKLWDLN 273
                   GS + T    + + D +
Sbjct: 315 NTKLVCAVGSRNGTEETKLLVLDFD 339

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 82.2 bits (201), Expect = 1e-18
 Identities = 66/312 (21%), Positives = 127/312 (40%), Gaps = 36/312 (11%)

Query: 11  NAHEESVWAVTWVPATETRPALLLTGSLDETVKLWRPDDMQLERTNTGHCLGVVSVAAHP 70
           +   E+   V  +   + +   +++G  D T+K+W  + ++ +R  TGH   V+ +    
Sbjct: 9   HCRSETSKGVYCLQYDDQK---IVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCL--QY 63

Query: 71  SGIIAASASLDSFVRVFDVDTNASIATLEASPSEVWQMQFDPKGTTLAVAGGGSASVKLW 130
              +  + S DS VRV+DV+T   + TL      V  ++F+              S+ +W
Sbjct: 64  DERVIITGSSDSTVRVWDVNTGEMLNTLIHHCEAVLHLRFNNGMMVTCSKDR---SIAVW 120

Query: 131 DTATWNLIATLSIPRPEGLKPTDKSSSKKFVLSVAWSPDGRRIACGSMDGTISVFDVTRA 190
           D A+   I    +                         D + I   S D TI V++ +  
Sbjct: 121 DMASPTDITLRRVLVGHRAAVNV------------VDFDDKYIVSASGDRTIKVWNTSTC 168

Query: 191 KFLHHLEGHFMPVRSLVYSPVDPRVLFSASDDTHVHMYDAEGKSLVTAMSGHASWVLSVD 250
           +F+  L GH   +          R++ S S D  + ++D E  + +  + GH    L   
Sbjct: 169 EFVRTLNGHKRGIA---CLQYRDRLVVSGSSDNTIRLWDIECGACLRVLEGH--EELVRC 223

Query: 251 ASPDGAAITTGSSDRTVKLWDLN---------MRAAMQSMTNHTDQVWGVSFRPLGGRVV 301
              D   I +G+ D  +K+WDL              ++++  H+ +V+ + F     ++V
Sbjct: 224 IRFDNKRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQFD--EFQIV 281

Query: 302 SVSDDKSISLYE 313
           S S D +I +++
Sbjct: 282 SSSHDDTILIWD 293

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.2 bits (110), Expect = 8e-07
 Identities = 28/163 (17%), Positives = 55/163 (33%), Gaps = 8/163 (4%)

Query: 154 KSSSKKFVLSVAWSPDGRRIACGSMDGTISVFDVTRAKFLHHLEGHFMPVRSLVYSPVDP 213
           +S + K V  +    D ++I  G  D TI ++D    +    L GH   V  L Y     
Sbjct: 11  RSETSKGVYCL--QYDDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQYDER-- 66

Query: 214 RVLFSASDDTHVHMYDAEGKSLVTAMSGHASWVLSVDASPDGAAITTGSSDRTVKLWDLN 273
                 +  +   +   +  +     +        +    +   + T S DR++ +WD+ 
Sbjct: 67  ---VIITGSSDSTVRVWDVNTGEMLNTLIHHCEAVLHLRFNNGMMVTCSKDRSIAVWDMA 123

Query: 274 -MRAAMQSMTNHTDQVWGVSFRPLGGRVVSVSDDKSISLYEYS 315
                         +            +VS S D++I ++  S
Sbjct: 124 SPTDITLRRVLVGHRAAVNVVDFDDKYIVSASGDRTIKVWNTS 166

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 83.0 bits (203), Expect = 1e-18
 Identities = 49/326 (15%), Positives = 103/326 (31%), Gaps = 47/326 (14%)

Query: 32  LLLTGSLDETVKLWRPDDMQLERTNTGHCLGVVSVAAHPSGIIAASASLDSFVRVFDVDT 91
            ++TG+ D+ ++++   + +     +GH  GV ++     GI+ + ++  +         
Sbjct: 25  YVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAHGGILVSGSTDRTVRVWDIKKG 84

Query: 92  NASIATLEASPSEVWQMQFDPKGTTLAVAGGGSASVKLWDTATWNLIATLSIPRPEGLKP 151
             +      + +       + K     V G    ++ +W     + +          L  
Sbjct: 85  CCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVF 144

Query: 152 TDKSSSKKFVLSVAWS--------PDGRRIACGSMDGTISVFDVTRAKFLHHLEGHFMPV 203
                +  FV  +             G  +  GS D T+ V+DV + K L+ L GH   +
Sbjct: 145 HTPEENPYFVGVLRGHMASVRTVSGHGNIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRI 204

Query: 204 RSLVYSPVDPRVLFSASDDTHVHMYDAEG------------------------------- 232
            S +Y     R + ++ D T        G                               
Sbjct: 205 YSTIYDHERKRCISASMDTTIRIWDLENGELMYTLQGHTALVGLLRLSDKFLVSAAADGS 264

Query: 233 ------KSLVTAMSGHASWVLSVDASPDGAAITTGSSDRTVKLWDLNMRAAMQS-MTNHT 285
                        S H + + ++        I    S+    +++L     + + +    
Sbjct: 265 IRGWDANDYSRKFSYHHTNLSAITTFYVSDNILVSGSENQFNIYNLRSGKLVHANILKDA 324

Query: 286 DQVWGVSFRPLGGRVVSVSDDKSISL 311
           DQ+W V+F+     V +V  D    L
Sbjct: 325 DQIWSVNFKG-KTLVAAVEKDGQSFL 349

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 62.2 bits (149), Expect = 1e-11
 Identities = 28/125 (22%), Positives = 42/125 (33%)

Query: 165 AWSPDGRRIACGSMDGTISVFDVTRAKFLHHLEGHFMPVRSLVYSPVDPRVLFSASDDTH 224
               +   +  G+ D  I V+D    KFL  L GH   V +L Y+     V  S      
Sbjct: 18  CLQFEDNYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAHGGILVSGSTDRTVR 77

Query: 225 VHMYDAEGKSLVTAMSGHASWVLSVDASPDGAAITTGSSDRTVKLWDLNMRAAMQSMTNH 284
           V        + V          L +    +   I TGS D T+ +W L   +++      
Sbjct: 78  VWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEE 137

Query: 285 TDQVW 289
            D   
Sbjct: 138 HDYPL 142

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 37.6 bits (85), Expect = 0.001
 Identities = 11/79 (13%), Positives = 27/79 (34%), Gaps = 6/79 (7%)

Query: 13  HEESVWAVTWVPATETRPALLLTGSLDETVKLWRPDDMQLERTN-TGHCLGVVSVAAHPS 71
           H  ++ A+T    ++     +L    +    ++     +L   N       + SV     
Sbjct: 280 HHTNLSAITTFYVSDN----ILVSGSENQFNIYNLRSGKLVHANILKDADQIWSVNFKGK 335

Query: 72  GIIAASASLDSFVRVFDVD 90
            ++ A+   D    +  +D
Sbjct: 336 TLV-AAVEKDGQSFLEILD 353

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 82.2 bits (201), Expect = 2e-18
 Identities = 39/327 (11%), Positives = 102/327 (31%), Gaps = 34/327 (10%)

Query: 9   VENAHEESVWAVTWVPATETRPALLLTGSLDETVKLWRPDDMQLE---RTNTGHCLGVVS 65
           +E A ++ +  +  +P+      LLL  S D ++ +++ D          +  +   ++ 
Sbjct: 6   IEQAPKDYISDIKIIPSKS----LLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLC 61

Query: 66  VAAHP-SGIIAASASLDSFVRVFDVDTNASIATLEASPSEVWQMQFDPKGTTLAVAGGGS 124
                 + +     ++   +   D+  + S   L  + + +   +    G    +A    
Sbjct: 62  CNFIDNTDLQIYVGTVQGEILKVDLIGSPSFQALTNNEANLGICRICKYGDDKLIAASWD 121

Query: 125 ASVKLWDTATWNLIATLSIPRPEGLKPTDKSSSKKFVLSVAWSPDGRRIACGSMDGTISV 184
             +++ D   +              K  + +++K          +  R+  G  +  +  
Sbjct: 122 GLIEVIDPRNYGDGVIAV-------KNLNSNNTKVKNKIFTMDTNSSRLIVGMNNSQVQW 174

Query: 185 FDVTRAKFL---HHLEGHFMPVRSLVYSPVDPRVLFSASDDTHVHMYDAEGKSLV----- 236
           F +   +         G    +R +   P +      +S D  V +   + +        
Sbjct: 175 FRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSK 234

Query: 237 ----------TAMSGHASWVLSVDASPDGAAITTGSSDRTVKLWDLNMRAAMQSMTNHTD 286
                        +  A  V S++ SP    + T  SD  +  W+L  R  +++     +
Sbjct: 235 RFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNFAKF-N 293

Query: 287 QVWGVSFRPLGGRVVSVSDDKSISLYE 313
           +   V        +   + D +     
Sbjct: 294 EDSVVKIACSDNILCLATSDDTFKTNA 320

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 53.7 bits (127), Expect = 8e-09
 Identities = 7/75 (9%), Positives = 25/75 (33%), Gaps = 3/75 (4%)

Query: 235 LVTAMSGHASWVLSVDASPDGAAITTGSSDRTVKLWDLNMRAAMQSMTN---HTDQVWGV 291
           +V        ++  +   P  + +   S D ++ ++  +++A    +     +   +   
Sbjct: 3   IVQIEQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCC 62

Query: 292 SFRPLGGRVVSVSDD 306
           +F       + V   
Sbjct: 63  NFIDNTDLQIYVGTV 77

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 53.3 bits (126), Expect = 1e-08
 Identities = 23/175 (13%), Positives = 55/175 (31%), Gaps = 11/175 (6%)

Query: 81  DSFVRVFDVDTNASIATLEASPSE----VWQMQFDPKGTTLAVAGG-GSASVKLWDTATW 135
           +S V+ F +                           +    A +   G  +V+ +D    
Sbjct: 169 NSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGD 228

Query: 136 NLIATLSIPRPEGLKPTDKSSSKKFVLSVAWSPDGRRIACGSMDGTISVFDVTRAKFLHH 195
           +  ++              ++    V S+ +SP  + +     DG IS +++   K + +
Sbjct: 229 DYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKN 288

Query: 196 LEGHFMPVRSLVYSPVDPRVLFSASDDTHVHMYDAEGKSLVTAMSGHASWVLSVD 250
                     +  +  D  +  + SDDT          ++   +  +AS +  + 
Sbjct: 289 FAKF-NEDSVVKIACSDNILCLATSDDT-----FKTNAAIDQTIELNASSIYIIF 337

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 41.4 bits (95), Expect = 1e-04
 Identities = 16/96 (16%), Positives = 29/96 (30%), Gaps = 9/96 (9%)

Query: 13  HEESVWAVTWVPATETRPALLLTGSLDETVKLWRPDDMQLERTNTGHCLGVVSVAAHPSG 72
               V ++ + P    R   L T   D  +  W     +  +           V    S 
Sbjct: 250 LAYPVNSIEFSP----RHKFLYTAGSDGIISCWNLQTRKKIKNFAKFN-EDSVVKIACSD 304

Query: 73  IIAASASLDSFVRVFDVDTNASIATLEASPSEVWQM 108
            I   A+ D   +       A   T+E + S ++ +
Sbjct: 305 NILCLATSDDTFKT----NAAIDQTIELNASSIYII 336

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} Length = 346

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

 Score = 79.8 bits (195), Expect = 2e-17
 Identities = 33/311 (10%), Positives = 79/311 (25%), Gaps = 32/311 (10%)

Query: 32  LLLTGSLDETVKLWRPDDMQLERT-NTGHCLGVVSVAAHPSG-IIAASASLDSFVRVFDV 89
            ++  +    + +       + ++       G  +    P         +    +   D+
Sbjct: 10  YMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDL 69

Query: 90  DTNASIATLEASPSE------VWQMQFDPKGTTLAVAGGGSASVKLWDTATWNLIATLSI 143
           DT  +      S         ++     P G  +      +  +          +   S 
Sbjct: 70  DTCKNTFHANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFST 129

Query: 144 PRPEGLKPTDKSSSKKFVLSVAWSPDGRRIACGSMDGTISVFDVTRAKFLHH-------- 195
                 KP       + V  +  + DG     G     + V        L          
Sbjct: 130 ADGLEAKPVRTFPMPRQVYLMRAADDGSLYVAGPDIYKMDVKTGKYTVALPLRNWNRKGY 189

Query: 196 -------------LEGHFMPVRSLVYSPVDPRVLFSASDDTHVHMYDAE-GKSLVTAMSG 241
                            F  + ++     D +   +A         D + GK+     + 
Sbjct: 190 SAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSVDLKTGKTHTQEFAD 249

Query: 242 HASWVLSVDASPDGAAITTGSSDRTVKLWDLNMRAAMQSMTNHTDQVWGVSFRPLGGRVV 301
                 +   SP       G  +  +  +DL  R  +++  N     + V+F   G ++ 
Sbjct: 250 LTELYFTGLRSPKDPNQIYGVLN-RLAKYDLKQRKLIKA-ANLDHTYYCVAFDKKGDKLY 307

Query: 302 SVSDDKSISLY 312
                  ++++
Sbjct: 308 LGGTFNDLAVF 318

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} Length = 346

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

 Score = 65.9 bits (159), Expect = 7e-13
 Identities = 28/271 (10%), Positives = 55/271 (20%), Gaps = 30/271 (11%)

Query: 66  VAAHPSGIIAASASLDSFVRVFDVDTNASIATLE-ASPSEVWQMQFDPKGTTLAVAGGGS 124
            A           +  + + V DV ++    +               P   T  V     
Sbjct: 2   PALKAGHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHY 61

Query: 125 ASVKLWDTATWNLIATLSIPRPEGLKPTDK-----SSSKKFVLSVAWSPDGRRIACGSMD 179
             +   D  T       ++    G           S   K V +                
Sbjct: 62  GDIYGIDLDTCKNTFHANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKP 121

Query: 180 GTISVFDVTRAKFLHHLEGHFMPVR-SLVYSPVDPRVLFSASDDTHVHMYDAE------- 231
             + VF          +    MP +  L+ +  D  +  +  D   + +   +       
Sbjct: 122 PRLEVFSTADGLEAKPVRTFPMPRQVYLMRAADDGSLYVAGPDIYKMDVKTGKYTVALPL 181

Query: 232 ------------GKSLVTAMSG---HASWVLSVDASPDGAAITTGSSDRTVKLWDL-NMR 275
                               S     +          D     T          DL   +
Sbjct: 182 RNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSVDLKTGK 241

Query: 276 AAMQSMTNHTDQVWGVSFRPLGGRVVSVSDD 306
              Q   + T+  +     P     +    +
Sbjct: 242 THTQEFADLTELYFTGLRSPKDPNQIYGVLN 272

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} Length = 346

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

 Score = 55.9 bits (133), Expect = 2e-09
 Identities = 27/295 (9%), Positives = 59/295 (20%), Gaps = 33/295 (11%)

Query: 6   LKSVENAHEESVWAVTWVPATETRPALLLTGSLDETVKLWRPDDMQLER------TNTGH 59
            KS     +         P   T     +  +    +     D  +              
Sbjct: 31  YKSCVMPDKFGPGTAMMAPDNRT---AYVLNNHYGDIYGIDLDTCKNTFHANLSSVPGEV 87

Query: 60  CLGVVSVAAHPSGIIAASASLDS------------FVRVFDVDTNASIATLEASPSEVW- 106
              + S A  P G    +    +             + VF          +   P     
Sbjct: 88  GRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFPMPRQV 147

Query: 107 QMQFDPKGTTLAVAGGGSASVKLWDTATWNLIATLSIPRPEGL---------KPTDKSSS 157
            +       +L VAG     + +        +   +  R               + +   
Sbjct: 148 YLMRAADDGSLYVAGPDIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEF 207

Query: 158 KKFVLSVAWSPDGRRIACGSMDGTISVFDVTRAKFLHHLEGHFMPVRSLVYSPVDPRVLF 217
                   +  D +  A   +       D+   K           +              
Sbjct: 208 SMLYTIARFKDDKQDPATADLLYGYLSVDLKTGKTHTQEFADLTELYFTGLRSPKDPNQI 267

Query: 218 SASDDTHVHMYDAEGKSLVTAMSGHASWVLSVDASPDGAAITTGSSDRTVKLWDL 272
               +        + K +  A   H      V     G  +  G +   + +++ 
Sbjct: 268 YGVLNRLAKYDLKQRKLIKAANLDH--TYYCVAFDKKGDKLYLGGTFNDLAVFNP 320

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} Length = 346

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

 Score = 54.4 bits (129), Expect = 4e-09
 Identities = 17/135 (12%), Positives = 36/135 (26%), Gaps = 17/135 (12%)

Query: 66  VAAHPSGIIAASASLDSFVRVFDVDTNASIATLEAS-PSEVWQMQFDPKGTTLAVAGGGS 124
                     A+A L       D+ T  +     A      +     PK           
Sbjct: 214 ARFKDDKQDPATADLLYGYLSVDLKTGKTHTQEFADLTELYFTGLRSPKDPNQIYGVLNR 273

Query: 125 ASVKLWDTATWNLIATLSIPRPEGLKPTDKSSSKKFVLSVAWSPDGRRIACGSMDGTISV 184
             +  +D     LI   ++                    VA+   G ++  G     ++V
Sbjct: 274 --LAKYDLKQRKLIKAANLDHT--------------YYCVAFDKKGDKLYLGGTFNDLAV 317

Query: 185 FDVTRAKFLHHLEGH 199
           F+    + + +++  
Sbjct: 318 FNPDTLEKVKNIKLP 332

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} Length = 346

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

 Score = 50.9 bits (120), Expect = 8e-08
 Identities = 15/157 (9%), Positives = 38/157 (24%), Gaps = 11/157 (7%)

Query: 164 VAWSPDGRRIACGSMDGTISVFDVTRAKFLHHLE-GHFMPVRSLVYSPVDPRVLFSASDD 222
            A       +   +    + V DV                  + + +P +       +  
Sbjct: 2   PALKAGHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHY 61

Query: 223 THVHMYDAEGKSLV------TAMSGHASWVLSVDASPDGAAITTGSSDRTVKLWDLNMRA 276
             ++  D +           +        + S   SPDG  +    +          ++ 
Sbjct: 62  GDIYGIDLDTCKNTFHANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKP 121

Query: 277 AMQSM----TNHTDQVWGVSFRPLGGRVVSVSDDKSI 309
               +         +       P    ++  +DD S+
Sbjct: 122 PRLEVFSTADGLEAKPVRTFPMPRQVYLMRAADDGSL 158

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 76.8 bits (187), Expect = 1e-16
 Identities = 46/306 (15%), Positives = 82/306 (26%), Gaps = 26/306 (8%)

Query: 13  HEESVWAVTWVPATETRPALLLTGSLDETVKLWRPDDMQ-----LERTNTGHCLGVVSVA 67
           H E V AVT    T      + TG     VK+W            +         + S  
Sbjct: 50  HGEVVCAVTISNPTR----HVYTGG-KGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCK 104

Query: 68  AHPSGIIAASASLDSFVRVFDVDTNASIATLEASPSEVWQMQFDPKGTTLAVAGGGSASV 127
             P G         S + ++D+         E + S                        
Sbjct: 105 LLPDGCTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPD------------ 152

Query: 128 KLWDTATWNLIATLSIPRPEGLKPTDKSSSKKFVLSVAWSPDGRRIACGSMDGTISVFDV 187
                +  +                           +  S DG ++  G +D T+  +D+
Sbjct: 153 SKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISNDGTKLWTGGLDNTVRSWDL 212

Query: 188 TRAKFLHHLEGHFMPVRSLVYSPVDPRVLFSASDDTHVHMYDAEGKSLVTAMSGHASWVL 247
                          + SL Y P    +           ++  +       +  H S VL
Sbjct: 213 RE-GRQLQQHDFTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPD--KYQLHLHESCVL 269

Query: 248 SVDASPDGAAITTGSSDRTVKLWDLNMRAAMQSMTNHTDQVWGVSFRPLGGRVVSVSDDK 307
           S+  +  G    +   D  +  W     A++   +  +  V           +V+ S DK
Sbjct: 270 SLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQ-SKESSSVLSCDISVDDKYIVTGSGDK 328

Query: 308 SISLYE 313
             ++YE
Sbjct: 329 KATVYE 334

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 57.9 bits (138), Expect = 4e-10
 Identities = 18/82 (21%), Positives = 26/82 (31%), Gaps = 15/82 (18%)

Query: 106 WQMQFDPKGTTLAVAGGGSASVKLWDTATWNLIATLSIPRPEGLKPTDKSSSKKFVLSVA 165
             ++F   G    V+ G    +  W T     I                      VLS  
Sbjct: 269 LSLKFAYCGKWF-VSTGKDNLLNAWRTPYGASIFQSKESSS--------------VLSCD 313

Query: 166 WSPDGRRIACGSMDGTISVFDV 187
            S D + I  GS D   +V++V
Sbjct: 314 ISVDDKYIVTGSGDKKATVYEV 335

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 55.6 bits (132), Expect = 2e-09
 Identities = 37/296 (12%), Positives = 67/296 (22%), Gaps = 55/296 (18%)

Query: 63  VVSVAAHPSGIIAA-SASLDSFVRVFDVDTNASIATLEASPSEVWQMQFDPKGTTLAVAG 121
             S      G +       D+ +          I TL      V  +        +   G
Sbjct: 12  AYSFHVTADGQMQPVPFPPDALIGPGIPRHARQINTLNHG-EVVCAVTISNPTRHVYTGG 70

Query: 122 GGSASVKLWDTATWNLIATLSIPRPEGLKPTDKSSSKKFVLSVAWSPDGRRIACGSMDGT 181
            G   VK+WD +     + +S                 ++ S    PDG  +  G    T
Sbjct: 71  KGC--VKVWDISHPGNKSPVSQLDCLN--------RDNYIRSCKLLPDGCTLIVGGEAST 120

Query: 182 ISVFDVTRAKFLHHLEGHFMPVRSLVYSPVDPRV-------------------------- 215
           +S++D+         E           +                                
Sbjct: 121 LSIWDLAAPTPRIKAELTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQ 180

Query: 216 ----------------LFSASDDTHVHMYDAEGKSLVTAMSGHASWVLSVDASPDGAAIT 259
                                   +        +          S + S+   P G  + 
Sbjct: 181 GHTDGASCIDISNDGTKLWTGGLDNTVRSWDLREGRQLQQHDFTSQIFSLGYCPTGEWLA 240

Query: 260 TGSSDRTVKLWDLNMRAAMQSMTNHTDQVWGVSFRPLGGRVVSVSDDKSISLYEYS 315
            G     V++  +N       +  H   V  + F   G   VS   D  ++ +   
Sbjct: 241 VGMESSNVEVLHVNKPD-KYQLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTP 295

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 51.0 bits (120), Expect = 6e-08
 Identities = 12/77 (15%), Positives = 24/77 (31%), Gaps = 5/77 (6%)

Query: 13  HEESVWAVTWVPATETRPALLLTGSLDETVKLWRPDDMQLERTNTGHCLGVVSVAAHPSG 72
           HE  V ++ +    +      ++   D  +  WR          +     V+S       
Sbjct: 264 HESCVLSLKFAYCGK----WFVSTGKDNLLNAWRTPYGASIFQ-SKESSSVLSCDISVDD 318

Query: 73  IIAASASLDSFVRVFDV 89
               + S D    V++V
Sbjct: 319 KYIVTGSGDKKATVYEV 335

>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]} Length = 432

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Paracoccus denitrificans [TaxId: 266]

 Score = 70.6 bits (172), Expect = 3e-14
 Identities = 38/288 (13%), Positives = 70/288 (24%), Gaps = 14/288 (4%)

Query: 32  LLLTGSLDETVKLWRPDDMQLERT-NTGHCLGVVSVAAHPSGIIAASASLDSFVRVFDVD 90
             +T      + L      +++   +TG+   V       SG        D  V + D+ 
Sbjct: 34  FSVTLRDAGQIALIDGSTYEIKTVLDTGY--AVHISRLSASGRYLFVIGRDGKVNMIDLW 91

Query: 91  TN-----ASIATLEASPSEVWQMQFDPKGTTLAVAGGGSASVKLWDTATWNLIATLSIPR 145
                  A I     + S         +               + D  T       S   
Sbjct: 92  MKEPTTVAEIKIGSEARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRG 151

Query: 146 PEGLKPTDKSSSKKFVLSVAWSPDGRR-IACGSMDGTISVFDVTRAKFLHHLEGHFMPVR 204
               +       +  V ++  S      I      G I + D T    L   E       
Sbjct: 152 MTYDEQEYHPEPR--VAAILASHYRPEFIVNVKETGKILLVDYTDLNNLKTTEISAERFL 209

Query: 205 SLVYSPVDPRVLFSASDDTHVHMYDAEGKSLVTAMSGHASWVLSVDASPDGAAITTGSSD 264
                    R   +A++  +  +     +  + A+              +    T G   
Sbjct: 210 HDGGLDGSHRYFITAANARNKLVVIDTKEGKLVAIEDTGGQTPHPGRGANFVHPTFGPVW 269

Query: 265 RTVKLWDLNMRAAMQSMTNHTDQVWGVS---FRPLGGRVVSVSDDKSI 309
            T  + D ++         H D  W +        GG +   +   S 
Sbjct: 270 ATSHMGDDSVALIGTDPEGHPDNAWKILDSFPALGGGSLFIKTHPNSQ 317

>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]} Length = 432

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Paracoccus denitrificans [TaxId: 266]

 Score = 69.8 bits (170), Expect = 5e-14
 Identities = 25/242 (10%), Positives = 58/242 (23%), Gaps = 23/242 (9%)

Query: 67  AAHPSGIIAASASLDSFVRVFDVDTNASIATLEASPSEVWQMQFDPKGTTLAVAGGGSAS 126
                 + + +      + + D  T      L+ +   V   +    G  L V G     
Sbjct: 27  DWDLENLFSVTLRDAGQIALIDGSTYEIKTVLD-TGYAVHISRLSASGRYLFVIGRDG-K 84

Query: 127 VKLWDTATWNLIATLSIPRPEGLKPTDKSSSKKFVLSVAWSPDGRR-IACGSMDGTISVF 185
           V + D           I           S ++    S     + +  IA         + 
Sbjct: 85  VNMIDLWMKEPTTVAEIKI--------GSEARSIETSKMEGWEDKYAIAGAYWPPQYVIM 136

Query: 186 DVTRAKFLHHLEGHFMPV-----------RSLVYSPVDPRVLFSASDDTHVHMYDAE-GK 233
           D    +         M              +++ S   P  + +  +   + + D     
Sbjct: 137 DGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGKILLVDYTDLN 196

Query: 234 SLVTAMSGHASWVLSVDASPDGAAITTGSSDRTVKLWDLNMRAAMQSMTNHTDQVWGVSF 293
           +L T       ++             T ++ R   +        + ++ +   Q      
Sbjct: 197 NLKTTEISAERFLHDGGLDGSHRYFITAANARNKLVVIDTKEGKLVAIEDTGGQTPHPGR 256

Query: 294 RP 295
             
Sbjct: 257 GA 258

>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]} Length = 432

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Paracoccus denitrificans [TaxId: 266]

 Score = 65.6 bits (159), Expect = 1e-12
 Identities = 25/209 (11%), Positives = 51/209 (24%), Gaps = 32/209 (15%)

Query: 114 GTTLAVAGGGSASVKLWDTATWNLIATLSIPRPEGLKPTDKSSSKKFVLSVAWSPDGRRI 173
               +V    +  + L D +T+ +   L                   V     S  GR +
Sbjct: 31  ENLFSVTLRDAGQIALIDGSTYEIKTVLDTG--------------YAVHISRLSASGRYL 76

Query: 174 ACGSMDGTISVFDV-----TRAKFLHHLEGHFMPVRSLVYSPVDPRVLFSASDDTHVHMY 228
                DG +++ D+     T    +           S +    D   +  A       + 
Sbjct: 77  FVIGRDGKVNMIDLWMKEPTTVAEIKIGSEARSIETSKMEGWEDKYAIAGAYWPPQYVIM 136

Query: 229 DAEGKSLVTAMS-----------GHASWVLSVDASPDGA-AITTGSSDRTVKLWDL-NMR 275
           D E        S                V ++ AS      I        + L D  ++ 
Sbjct: 137 DGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGKILLVDYTDLN 196

Query: 276 AAMQSMTNHTDQVWGVSFRPLGGRVVSVS 304
               +  +    +            ++ +
Sbjct: 197 NLKTTEISAERFLHDGGLDGSHRYFITAA 225

>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]} Length = 432

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Paracoccus denitrificans [TaxId: 266]

 Score = 53.3 bits (127), Expect = 1e-08
 Identities = 40/320 (12%), Positives = 75/320 (23%), Gaps = 48/320 (15%)

Query: 32  LLLTGSLDETVKLWRPDDMQLE-----RTNTGHCLGVVSVAAHPSG-IIAASASLDSFVR 85
            L     D  V +      +       +  +       S           A A       
Sbjct: 75  YLFVIGRDGKVNMIDLWMKEPTTVAEIKIGSEARSIETSKMEGWEDKYAIAGAYWPPQYV 134

Query: 86  VFDVDTNASIATLEASP-----------SEVWQMQFDPKGTTLAVAGGGSASVKLWDTAT 134
           + D +T                        V  +          V    +  + L D   
Sbjct: 135 IMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGKILLVDYTD 194

Query: 135 WNLIATLSIPRPEGLKPTDKSSSKKFVLSVAWSPDGRRIACGSMDGTISVFDVTRAKFLH 194
            N + T  I     L       S ++ ++ A + +   +        +++ D        
Sbjct: 195 LNNLKTTEISAERFLHDGGLDGSHRYFITAANARNKLVVIDTKEGKLVAIEDTGGQTPHP 254

Query: 195 HLEGHF------------------------MPVRSLVYSPVDPRVLFSASDDTHVHM--Y 228
               +F                         P      +        +    +       
Sbjct: 255 GRGANFVHPTFGPVWATSHMGDDSVALIGTDPEGHPDNAWKILDSFPALGGGSLFIKTHP 314

Query: 229 DAEGKSLVTAMSGHASWVLSVDASPDGAAITTGSSDRTVKLWDLNMRAAMQSMTNHTDQV 288
           +++   +   ++  A    SV A  D  A+T   SD   K   +   A    +T    +V
Sbjct: 315 NSQYLYVDATLNPEAEISGSV-AVFDIKAMTGDGSDPEFKTLPI---AEWAGITEGQPRV 370

Query: 289 WGVSFRPLGGRV-VSVSDDK 307
               F   G  V  SV + K
Sbjct: 371 VQGEFNKDGTEVWFSVWNGK 390

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 360

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

 Score = 68.0 bits (164), Expect = 2e-13
 Identities = 28/326 (8%), Positives = 74/326 (22%), Gaps = 27/326 (8%)

Query: 1   MKFAGLKSVENAHEESVWAVTWVPATETRPALLLTGSLDETVKLWRPDDMQLERTNTGHC 60
              +G   ++      +  V     T+      + G+ +                   + 
Sbjct: 29  QDVSGTYVLKVPEPLRIRYVRRGGDTKV---AFIHGTREGDFLGIYDYRTGKAEKFEENL 85

Query: 61  LGVVSVAAHPSGIIAASASLDSFVRVFDVDTNASIATLEASPSEVWQMQFDPKGTTLAVA 120
             V ++    +G  A  A+    +   D++T        +  + +           +A  
Sbjct: 86  GNVFAMGVDRNGKFAVVANDRFEIMTVDLETGKPTVIERSREAMITDFTISDNSRFIAYG 145

Query: 121 GGGSASVKLWDTATWNLIATLSIPRPEGLKPTDKSSSKKFVLSVAWSPDGRRIACGSMDG 180
                           ++  + +   EG K    ++      + A+  D + +   S   
Sbjct: 146 -----FPLKHGETDGYVMQAIHVYDMEGRKIFAATTENSHDYAPAFDADSKNLYYLSYRS 200

Query: 181 TISVFDVTRAKF-------LHHLEGHFMPVRSLVYSPVDPRVLFSAS-------DDTHVH 226
                D     F          +             P       +           +   
Sbjct: 201 LDPSPDRVVLNFSFEVVSKPFVIPLIPGSPNPTKLVP-RSMTSEAGEYDLNDMYKRSSPI 259

Query: 227 MYDAEGKSLVTAMSGHASWVLSVDASPDGAAITTGSSDRTVKLWDLNMRAAMQSMTNHTD 286
             D     ++  +                A          +  +D+      + +T   +
Sbjct: 260 NVDPGDYRMIIPLESSILIYSVPVHGEFAAYYQGAPEKGVLLKYDV----KTRKVTEVKN 315

Query: 287 QVWGVSFRPLGGRVVSVSDDKSISLY 312
            +  +        V+   DD  I  +
Sbjct: 316 NLTDLRLSADRKTVMVRKDDGKIYTF 341

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 360

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

 Score = 67.2 bits (162), Expect = 3e-13
 Identities = 21/177 (11%), Positives = 38/177 (21%), Gaps = 19/177 (10%)

Query: 104 EVWQMQFDPKGTTLAVAGGGSASVKLWDTATWNLIATLSIPRPEGLKPTDKSSSKKFVLS 163
             +   FD     L       +     D    N             KP            
Sbjct: 180 HDYAPAFDADSKNLYY-LSYRSLDPSPDRVVLNFSF------EVVSKPFVIPLIPGSPNP 232

Query: 164 VAWSPDGRRIACGSMDGTISV-------FDVTRAKFLHHLEGHFMPVRSLVYSPVDPRVL 216
               P       G  D             D    + +  LE   +     V+        
Sbjct: 233 TKLVPRSMTSEAGEYDLNDMYKRSSPINVDPGDYRMIIPLESSILIYSVPVHGE-FAAYY 291

Query: 217 FSASDDTHVHMYDAEGKSLVTAMSGHASWVLSVDASPDGAAITTGSSDRTVKLWDLN 273
             A +   +  YD + + +        + +  +  S D   +     D  +  + L 
Sbjct: 292 QGAPEKGVLLKYDVKTRKVTE----VKNNLTDLRLSADRKTVMVRKDDGKIYTFPLE 344

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 360

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

 Score = 65.7 bits (158), Expect = 1e-12
 Identities = 22/196 (11%), Positives = 47/196 (23%), Gaps = 5/196 (2%)

Query: 45  WRPDDMQLERTNTGHCLGVVSVAAHPSGIIAASASLDSFVRVFDVDTNASIATLEASPSE 104
               + +     T       + A           S  S     D         + + P  
Sbjct: 163 VYDMEGRKIFAATTENSHDYAPAFDADSKNLYYLSYRSLDPSPDRVVLNFSFEVVSKPFV 222

Query: 105 VWQMQFDPKGTTLAVAGGGSASVKLWDTATWNLIATLSIPRPEGLKPTDKSSSKKFVLSV 164
           +  +   P  T L      S + +      +   + +++   +        SS       
Sbjct: 223 IPLIPGSPNPTKLVPRSMTSEAGEYDLNDMYKRSSPINVDPGDYRMIIPLESSILIYSVP 282

Query: 165 AWSPDGRRIACGSMDGTISVFDVTRAKFLHHLEGHFMPVRSLVYSPVDPRVLFSASDDTH 224
                          G +  +DV   K    +      +  L  S  D + +    DD  
Sbjct: 283 VHGEFAAYYQGAPEKGVLLKYDVKTRK----VTEVKNNLTDLRLSA-DRKTVMVRKDDGK 337

Query: 225 VHMYDAEGKSLVTAMS 240
           ++ +  E       + 
Sbjct: 338 IYTFPLEKPEDERTVE 353

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 360

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

 Score = 53.3 bits (126), Expect = 1e-08
 Identities = 19/186 (10%), Positives = 37/186 (19%), Gaps = 32/186 (17%)

Query: 32  LLLTGSLDETVKLWRPDDMQLE-------RTNTGHCLGVVSVAAHPSGIIAASASLDSF- 83
            L   S            +                          P  + + +   D   
Sbjct: 192 NLYYLSYRSLDPSPDRVVLNFSFEVVSKPFVIPLIPGSPNPTKLVPRSMTSEAGEYDLND 251

Query: 84  ------VRVFDVDTNASIATLEASPSEVWQMQFDPKGTTLAVAGGGSASVKLWDTATWNL 137
                     D      I  LE+S                         +  +D  T  +
Sbjct: 252 MYKRSSPINVDPGDYRMIIPLESSILIYSVPVHGEFAAYYQ-GAPEKGVLLKYDVKTRKV 310

Query: 138 IATLSIPRPEGLKPTDKSSSKKFVLSVAWSPDGRRIACGSMDGTISVFDVTRAKFLHHLE 197
               +                  +  +  S D + +     DG I  F + + +    +E
Sbjct: 311 TEVKN-----------------NLTDLRLSADRKTVMVRKDDGKIYTFPLEKPEDERTVE 353

Query: 198 GHFMPV 203
               P+
Sbjct: 354 TDKRPL 359

>d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Length = 368

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 67.7 bits (164), Expect = 2e-13
 Identities = 33/295 (11%), Positives = 69/295 (23%), Gaps = 29/295 (9%)

Query: 12  AHEESVWAVTWVPATETRPALLLTGSLDETVKLW--RPDDMQLERTNTGHCLGVVSV--- 66
           A + S         +  R  + L      T + W            + G  L +      
Sbjct: 17  ASDGSSCDHGPGAISR-RSHITLPAYFAGTTENWVSCAGCGVTLGHSLGAFLSLAVAGHS 75

Query: 67  -----AAHPSGIIAASASLDSFVRVFDVDTNASIATLE-------ASPSEVWQMQFDPKG 114
                 A  S   +A      +V VFD  T   IA +E       +    V  +      
Sbjct: 76  GSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDAPRFSVGPRVHIIGNCASS 135

Query: 115 TTLAVAGGGSASVKLWDTATWNLIATLSIPRPEGLKPTDKSSSKKFVLSVAWSPDGRRIA 174
             L     GS++         +            + P   ++          S      A
Sbjct: 136 ACLLFFLFGSSAAAGLSVPGASDDQLTKSASCFHIHPGAAATH------YLGSCPASLAA 189

Query: 175 CGSMDGTISVFDVTRAKFLHHLEGHFMPVRSLVYSPVDPRVLFSASDDTHVHMYDAEGKS 234
                   +   V                ++   +     ++++ +         A G +
Sbjct: 190 SDLAAAPAAAGIVGAQCT----GAQNCSSQA-AQANYPGMLVWAVASSILQGDIPAAGAT 244

Query: 235 LVTAMSGHASWVLSVDASPDGAAITTGSSDRTVKLWDLNMRAAMQSMTNHTDQVW 289
           +  A+ G+ S   + +    G  +     +    +      +             
Sbjct: 245 MKAAIDGNESGRKADNFRSAGFQMVAKLKNTDGIMILTVEHSRSCLAAAENTSSV 299

>d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Length = 368

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 43.4 bits (101), Expect = 2e-05
 Identities = 14/139 (10%), Positives = 37/139 (26%), Gaps = 7/139 (5%)

Query: 13  HEESVWAVTWVPATETRPALLLTGSLDETVKLWRPDDMQLERTNTGHCLGVVSVAAHPSG 72
              S+       A  T  A +           +R    Q+           + +      
Sbjct: 229 VASSILQGDIPAAGATMKAAIDGNESGRKADNFRSAGFQMVAKLKNT--DGIMILTVEHS 286

Query: 73  IIAASASLDSFVRVFDVDTNASIATLEASPSEVWQMQFDPKGTTLA-VAGGGSASVKLWD 131
               +A+              +   +     +   +     G +       G+  + ++D
Sbjct: 287 RSCLAAA--ENTSSVTASVGQTSGPISN-GHDSDAIIAAQDGASDNYANSAGTEVLDIYD 343

Query: 132 TATWNLIATLSIPR-PEGL 149
            A+    +++ + + PE L
Sbjct: 344 AASDQDQSSVELDKGPESL 362

>d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Length = 368

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 43.0 bits (100), Expect = 2e-05
 Identities = 18/185 (9%), Positives = 45/185 (24%), Gaps = 12/185 (6%)

Query: 30  PALLLTGSLDETVKLWRPDD------MQLERTNTGHCLGVVSVAAHPSGIIAASASLDSF 83
            A    GS   ++             +   +          +  A+  G++  + +    
Sbjct: 175 AATHYLGSCPASLAASDLAAAPAAAGIVGAQCTGAQNCSSQAAQANYPGMLVWAVASSIL 234

Query: 84  VRVFDVDTNASIATLEASPSEVWQMQFDPKGTTLAVA----GGGSASVKLWDTATWNLIA 139
                       A ++ + S      F   G  +        G          +      
Sbjct: 235 QGDIPAAGATMKAAIDGNESGRKADNFRSAGFQMVAKLKNTDGIMILTVEHSRSCLAAAE 294

Query: 140 TLSIPRPEGLKPTDKSSSKKFVLSVAWSPDGRR--IACGSMDGTISVFDVTRAKFLHHLE 197
             S       + +   S+     ++  + DG     A  +    + ++D    +    +E
Sbjct: 295 NTSSVTASVGQTSGPISNGHDSDAIIAAQDGASDNYANSAGTEVLDIYDAASDQDQSSVE 354

Query: 198 GHFMP 202
               P
Sbjct: 355 LDKGP 359

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 66.4 bits (160), Expect = 5e-13
 Identities = 38/310 (12%), Positives = 91/310 (29%), Gaps = 35/310 (11%)

Query: 32  LLLTGSLDETVKLWRPDDMQLERTNTGHCLG--VVSVAAHPSG-IIAASASLDSFVRVFD 88
            +L  +  + + +   + M +++  T    G   +     P G I  A+ +    +   D
Sbjct: 3   YILAPARPDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKID 62

Query: 89  VDTNASIATLEASP-----SEVWQMQFDPKGTTLAVAGGGSASVKLWDTATWNLIATLSI 143
           + T  ++  ++ S        ++     P G TLA+                     +++
Sbjct: 63  LVTGETLGRIDLSTPEERVKSLFGAALSPDGKTLAIYESPVRLELTHF---EVQPTRVAL 119

Query: 144 PRPEGLKPTDKSSSKKFVLSVAWSPDGRRIACGSMDGTISVFD----------------- 186
              E L       + + +  +AW+ DG ++     D  +   +                 
Sbjct: 120 YDAETLSRRKAFEAPRQITMLAWARDGSKLYGLGRDLHVMDPEAGTLVEDKPIQSWEAET 179

Query: 187 ----VTRAKFLHHLEGHFMPVRSLVYSPVDPRVLFSASDDTHVHMYDAEGKSLVTAMSGH 242
                  A +  H     M                +A     + M    G+  +  +   
Sbjct: 180 YAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMREVRIM 239

Query: 243 ASWVLSVDASPDGAAITTGSSDRTVKLWDLNMRAAMQSMTNHTDQVWGVSFRPLGGRVVS 302
             +  S   +P         +   ++ +DL   A+++ +       + V+    G  V  
Sbjct: 240 DVFYFSTAVNPAK--TRAFGAYNVLESFDLEKNASIKRV-PLPHSYYSVNVSTDGSTVWL 296

Query: 303 VSDDKSISLY 312
                 ++ Y
Sbjct: 297 GGALGDLAAY 306

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 56.4 bits (134), Expect = 1e-09
 Identities = 27/303 (8%), Positives = 66/303 (21%), Gaps = 29/303 (9%)

Query: 13  HEESVWAVTWVPATETRPALLLTGSLDETVKLWRPDDMQLERTNTGHCL-----GVVSVA 67
              +       P          T +  E++        +                +   A
Sbjct: 32  AGPTPMVPMVAPGGRI---AYATVNKSESLVKIDLVTGETLGRIDLSTPEERVKSLFGAA 88

Query: 68  AHPSGIIAASASLDSFVRVFDVDT-----------NASIATLEASPSEVWQMQFDPKGTT 116
             P G   A       + +   +              S      +P ++  + +   G+ 
Sbjct: 89  LSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEAPRQITMLAWARDGSK 148

Query: 117 LAVAGGGSASVKLWDTATWNLIATLSIPRPEGLKPTDKSSS-------KKFVLSVAWSPD 169
           L   G     +              S       +P   +                    D
Sbjct: 149 LYGLGRDLHVMDPEAGTLVEDKPIQSWEAETYAQPDVLAVWNQHESSGVMATPFYTARKD 208

Query: 170 GRRIACGSMDGTISVFDVTRAKFLHHLEGHFMPVRSLVYSPVDPRVLFSASDDTHVHMYD 229
                  +    +   D+   +                 + V+P    +      +  +D
Sbjct: 209 IDPADPTAYRTGLLTMDLETGEMAMREVRIMDVFY--FSTAVNPAKTRAFGAYNVLESFD 266

Query: 230 AEGKSLVTAMSGHASWVLSVDASPDGAAITTGSSDRTVKLWDLNMRAAMQSMTNHTDQVW 289
            E  + +           SV+ S DG+ +  G +   +  +D         +    +   
Sbjct: 267 LEKNASI-KRVPLPHSYYSVNVSTDGSTVWLGGALGDLAAYDAETLEKKGQVDLPGNASM 325

Query: 290 GVS 292
            ++
Sbjct: 326 SLA 328

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 54.0 bits (128), Expect = 7e-09
 Identities = 19/154 (12%), Positives = 41/154 (26%), Gaps = 18/154 (11%)

Query: 59  HCLGVVSVAAHPSGIIAASASLDSFVRVFDVDTNASIAT-LEASPSEVWQMQFDPKGTTL 117
             +      A      A   +  + +   D++T       +       +    +P  T  
Sbjct: 196 GVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMREVRIMDVFYFSTAVNPAKTRA 255

Query: 118 AVAGGGSASVKLWDTATWNLIATLSIPRPEGLKPTDKSSSKKFVLSVAWSPDGRRIACGS 177
                    ++ +D      I  + +P                  SV  S DG  +  G 
Sbjct: 256 FG---AYNVLESFDLEKNASIKRVPLPHS--------------YYSVNVSTDGSTVWLGG 298

Query: 178 MDGTISVFDVTRAKFLHHLEGHFMPVRSLVYSPV 211
             G ++ +D    +    ++       SL    +
Sbjct: 299 ALGDLAAYDAETLEKKGQVDLPGNASMSLASVRL 332

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 65.0 bits (156), Expect = 1e-12
 Identities = 36/302 (11%), Positives = 85/302 (28%), Gaps = 29/302 (9%)

Query: 12  AHEESVWAVTWVPATETRPALLLTGSLDETVKLWRPDDMQLERTNTGHCLGVVSVAAHPS 71
            H + + A+T  P        L++GS D  +  W          +  H   +VS+    +
Sbjct: 11  GHNKGITALTVNP--------LISGSYDGRIMEWS-----SSSMHQDHSNLIVSLDNSKA 57

Query: 72  GIIAASASLDSFVRVFDVDTNASIATLEASPSEVWQMQFDPKGTTLAVAGGGSASVKLWD 131
              ++ +  D+                    S+      +  G T  +            
Sbjct: 58  QEYSSISWDDTLKVNGITKHE--------FGSQPKVASANNDGFTAVLTNDD------DL 103

Query: 132 TATWNLIATLSIPRPEGLKPTDKSSSKKFVLSVAWSPDGRRIACGSMDGTISVFDVTRAK 191
               +    +          +  S S+ +V       +  ++   S              
Sbjct: 104 LILQSFTGDIIKSVRLNSPGSAVSLSQNYVAVGLEEGNTIQVFKLSDLEVSFDLKTPLRA 163

Query: 192 FLHHLEGHFMPVRSLVYSPVDPRVLFSASDDTHVHMYDAEGKSLVTAMSGHASWVLSVDA 251
              ++              +   +L+            A   S + A+S   +   + + 
Sbjct: 164 KPSYISISPSETYIAAGDVMGKILLYDLQSREVKTSRWAFRTSKINAISWKPAEKGANEE 223

Query: 252 SPDGAAITTGSSDRTVKLWDL-NMRAAMQSMTNHTDQVWGVSFRPLGGRVVSVSDDKSIS 310
             +   + TGS D  + ++ +      ++++  H D V  + +      +VS   D  I 
Sbjct: 224 EIEEDLVATGSLDTNIFIYSVKRPMKIIKALNAHKDGVNNLLWET-PSTLVSSGADACIK 282

Query: 311 LY 312
            +
Sbjct: 283 RW 284

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 44.2 bits (102), Expect = 9e-06
 Identities = 9/61 (14%), Positives = 25/61 (40%), Gaps = 9/61 (14%)

Query: 235 LVTAMSGHASWVLSVDASPDGAAITTGSSDRTVKLWDLNMRAAMQSMTNHTDQVWGVSFR 294
           ++  +SGH   + ++  +P    + +GS D  +  W  +         +H++ +  +   
Sbjct: 5   VLKTISGHNKGITALTVNP----LISGSYDGRIMEWSSS-----SMHQDHSNLIVSLDNS 55

Query: 295 P 295
            
Sbjct: 56  K 56

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 43.0 bits (99), Expect = 2e-05
 Identities = 20/115 (17%), Positives = 39/115 (33%), Gaps = 18/115 (15%)

Query: 191 KFLHHLEGHFMPVRSLVYSPVDPRVLFSASDDTHVHMYDAEGKSLVTAMSGHASWVLSVD 250
           + L  + GH   + +L  +P     L S S D  +  + +      +    H++ ++S+D
Sbjct: 4   EVLKTISGHNKGITALTVNP-----LISGSYDGRIMEWSSS-----SMHQDHSNLIVSLD 53

Query: 251 ASPDGAAITTGSSDRTVKLWDLNMRAAMQSMTNHTDQVWGVSFRPLGGRVVSVSD 305
            S      +          WD  ++    +      Q    S    G   V  +D
Sbjct: 54  NSKAQEYSSIS--------WDDTLKVNGITKHEFGSQPKVASANNDGFTAVLTND 100

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 42.6 bits (98), Expect = 3e-05
 Identities = 12/56 (21%), Positives = 27/56 (48%), Gaps = 2/56 (3%)

Query: 35  TGSLDETVKLWRPDD-MQLERTNTGHCLGVVSVAAHPSGIIAASASLDSFVRVFDV 89
           TGSLD  + ++     M++ +    H  GV ++       +  S+  D+ ++ ++V
Sbjct: 232 TGSLDTNIFIYSVKRPMKIIKALNAHKDGVNNLLWETPSTLV-SSGADACIKRWNV 286

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 37.2 bits (84), Expect = 0.002
 Identities = 9/82 (10%), Positives = 21/82 (25%), Gaps = 13/82 (15%)

Query: 106 WQMQFDPKGTTLAVAGGGSASVKLWDTATWNLIATLSIPRPEGLKPTDKSSSKKFVLSVA 165
                +     L   G    ++ ++       I                ++ K  V ++ 
Sbjct: 218 KGANEEEIEEDLVATGSLDTNIFIYSVKRPMKIIKA------------LNAHKDGVNNLL 265

Query: 166 WSPDGRRIACGSMDGTISVFDV 187
           W      +     D  I  ++V
Sbjct: 266 WETPST-LVSSGADACIKRWNV 286

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 65.3 bits (157), Expect = 1e-12
 Identities = 44/302 (14%), Positives = 87/302 (28%), Gaps = 15/302 (4%)

Query: 23  VPATETRPALLLTGSLD---------ETVKLWRPDDMQLERTNTGHCLGVVSVAAHPSGI 73
           +P T    A++L  +            +V       +      T H          PSG 
Sbjct: 12  LPRTARGTAVVLGNTPAGDKIQYCNGTSVYTVPVGSLTDTEIYTEHSHQTTVAKTSPSGY 71

Query: 74  IAASASLDSFVRVFDVDTNASIATLEASP-SEVWQMQFDPKGTTLAVAGGGSASVKLWDT 132
             AS  +   VR++D      I        S   +       +    A G          
Sbjct: 72  YCASGDVHGNVRIWDTTQTTHILKTTIPVFSGPVKDISWDSESKRIAAVGEGRERFGHVF 131

Query: 133 ATWNLIATLSIPRPEGLKPTDKSSSKKFVLSVAWSPDGRRIACGSMDGTISVFDVTRAKF 192
                 +  ++        +      +    ++ S D                     KF
Sbjct: 132 LFDTGTSNGNLTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKFKSTFGEHTKF 191

Query: 193 LHHLEGHFMPVRSLVYSPVDPRVLFSASDDTHVHMYDAEGKSLVTAMSGHASWVLSVDAS 252
           +H +  +               VL++  D T   +++ +    V               S
Sbjct: 192 VHSVRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGL----TWS 247

Query: 253 PDGAAITTGSSDRTVKLWDLNMRAAMQSMTNHTD-QVWGVSFRPLGGRVVSVSDDKSISL 311
           PDG  I + S+D+T+K+W++      +++   T  +   +        +VS+S +  I+ 
Sbjct: 248 PDGTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQALVSISANGFINF 307

Query: 312 YE 313
             
Sbjct: 308 VN 309

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 50.3 bits (118), Expect = 1e-07
 Identities = 17/67 (25%), Positives = 28/67 (41%)

Query: 165 AWSPDGRRIACGSMDGTISVFDVTRAKFLHHLEGHFMPVRSLVYSPVDPRVLFSASDDTH 224
            WSPDG +IA  S D TI +++V   K    +          +      + L S S +  
Sbjct: 245 TWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQALVSISANGF 304

Query: 225 VHMYDAE 231
           ++  + E
Sbjct: 305 INFVNPE 311

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 49.5 bits (116), Expect = 2e-07
 Identities = 10/70 (14%), Positives = 24/70 (34%), Gaps = 1/70 (1%)

Query: 246 VLSVDASPDGAAITTGSSDRTVKLWDLNMRAAMQSMTNHTDQVWGVSFRPLGGRVVSVSD 305
            + +  +P G  I   +   +V    +      +  T H+ Q       P G    S   
Sbjct: 20  AVVLGNTPAGDKIQYCN-GTSVYTVPVGSLTDTEIYTEHSHQTTVAKTSPSGYYCASGDV 78

Query: 306 DKSISLYEYS 315
             ++ +++ +
Sbjct: 79  HGNVRIWDTT 88

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 46.4 bits (108), Expect = 2e-06
 Identities = 29/263 (11%), Positives = 65/263 (24%), Gaps = 12/263 (4%)

Query: 13  HEESVWAVTWVPATETRPALLLTGSLDETVKLWRPDD--MQLERTNTGHCLGVVSVAAHP 70
           H          P          +G +   V++W        L+ T       V  ++   
Sbjct: 57  HSHQTTVAKTSP----SGYYCASGDVHGNVRIWDTTQTTHILKTTIPVFSGPVKDISWDS 112

Query: 71  SGIIAASASLDSFVRVFDVDTNASIATLEASPSEVWQMQFDPKGTTLAVAGGGSASVKLW 130
                A+              +   +    +         D K +       GS    + 
Sbjct: 113 ESKRIAAVGEGRERFGHVFLFDTGTSNGNLTGQARAMNSVDFKPSRPFRIISGSDDNTVA 172

Query: 131 DTATWNLIATLSIPRPEGLKPTDKSSSKKFVLSVAWSPDGRRIACGSMDGTISVFDVTRA 190
                      +         + + +    +   +   DG  +    +DGT +      +
Sbjct: 173 IFEGPPFKFKSTFGEHTKFVHSVRYNPDGSL-FASTGGDGTIVLYNGVDGTKTGVFEDDS 231

Query: 191 KFLHHLEGHFMPVRSLVYSPVDPRVLFSASDDTHVHMYDAE-GKSLVTAMSGHASWVLSV 249
                  G    +        D   + SAS D  + +++    K   T   G       +
Sbjct: 232 LKNVAHSGSVFGLTW----SPDGTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQL 287

Query: 250 DASPDGAAITTGSSDRTVKLWDL 272
                  A+ + S++  +   + 
Sbjct: 288 GIIWTKQALVSISANGFINFVNP 310

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 45.3 bits (105), Expect = 5e-06
 Identities = 11/74 (14%), Positives = 28/74 (37%), Gaps = 1/74 (1%)

Query: 18  WAVTWVPATETRPALLLTGSLDETVKLWRPDDMQLERT-NTGHCLGVVSVAAHPSGIIAA 76
               +          + + S D+T+K+W    +++E+T   G  +    +    +     
Sbjct: 238 SGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQALV 297

Query: 77  SASLDSFVRVFDVD 90
           S S + F+   + +
Sbjct: 298 SISANGFINFVNPE 311

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 64.9 bits (156), Expect = 2e-12
 Identities = 43/316 (13%), Positives = 94/316 (29%), Gaps = 21/316 (6%)

Query: 11  NAHEESVWAVTWVPATETRPALLLTGSLDETVKLWRPDDMQLERTNTGHCL--GVVSVAA 68
             H   V  V W P +      ++T   D    +W       + T     +      V  
Sbjct: 48  KEHNGQVTGVDWAPDSN----RIVTCGTDRNAYVWTLKGRTWKPTLVILRINRAARCVRW 103

Query: 69  HPSGIIAASASLDSFVRVFDVDTNASIATLEASPSEVWQ---MQFDPKGTTLAVAGGGSA 125
            P+    A  S    + +   +        +     +            + L  AG    
Sbjct: 104 APNEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCDF 163

Query: 126 SVKLWDTATWNLIATLSIPRPEGLKPTDK-----SSSKKFVLSVAWSPDGRRIACGSMDG 180
             +++      +    +        P  +     SSS  +V  V +S +G R+A  S D 
Sbjct: 164 KCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHDS 223

Query: 181 TISVFDVTRAKFLHHLEGHFMPVRSLVYSPVDPRVLFSASDDTHVHMYDAEGKSLVTAMS 240
           T+ + D  +   +  L    +P+ ++ +   +  ++ +  D     ++  +  +   +  
Sbjct: 224 TVCLADADKKMAVATLASETLPLLAVTFIT-ESSLVAAGHDC-FPVLFTYDSAAGKLSFG 281

Query: 241 GHASWVLSVDASPDGAAITTGSSDRTVKLWDLNMRAAMQSMTNHTDQVWGVSFRPLGG-- 298
           G              A     + D+           A    + H + V  +S    G   
Sbjct: 282 GRLDVPKQSSQRGLTARERFQNLDKKASSEGSAAAGA-GLDSLHKNSVSQISVLSGGKAK 340

Query: 299 --RVVSVSDDKSISLY 312
             +  +   D  +S++
Sbjct: 341 CSQFCTTGMDGGMSIW 356

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 64.5 bits (155), Expect = 3e-12
 Identities = 51/321 (15%), Positives = 88/321 (27%), Gaps = 36/321 (11%)

Query: 13  HEESVWAVTWVPATETRPALLLTGSLDETVKLWRPDDMQLERTNT--GHCLGVVSVAAHP 70
             E +    W          +     +  V ++     +  + +    H   V  V   P
Sbjct: 6   LVEPISCHAWNKDRT----QIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAP 61

Query: 71  SGIIAASASLDSFVRVFDVDTNASIATLEAS-PSEVWQMQFDPKGTTLAVAGGGSASVKL 129
                 +   D    V+ +       TL     +   +             G GS  + +
Sbjct: 62  DSNRIVTCGTDRNAYVWTLKGRTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISI 121

Query: 130 WDTATWNLIATLSIPRPEGLKPTDKSSSKKFVLSVAWSPDGRRIACGSMDGTISVFDVTR 189
                 N        +               VLS+ W P+   +A GS D    +F    
Sbjct: 122 CYFEQENDWWVCKHIKKPIRST---------VLSLDWHPNSVLLAAGSCDFKCRIFSAYI 172

Query: 190 AKFL------------------HHLEGHFMPVRSLVYSPVDPRVLFSASDDTHVHMYDAE 231
            +                             V  + +S    RV +  S D+ V + DA+
Sbjct: 173 KEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWV-SHDSTVCLADAD 231

Query: 232 GKSLVTAMSGHASWVLSVDASPDGAAITTGSSDRTVKLWDLNMRAAMQSMTNHTDQVWGV 291
            K  V  ++     +L+V    + + +  G  D    L+  +  A   S     D     
Sbjct: 232 KKMAVATLASETLPLLAVTFITESSLVAAG-HDCFPVLFTYDSAAGKLSFGGRLDVPKQS 290

Query: 292 SFRPLGGRVVSVSDDKSISLY 312
           S R L  R    + DK  S  
Sbjct: 291 SQRGLTARERFQNLDKKASSE 311

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 56.0 bits (133), Expect = 2e-09
 Identities = 14/77 (18%), Positives = 30/77 (38%), Gaps = 2/77 (2%)

Query: 240 SGHASWVLSVDASPDGAAITTGSSDRTVKLWDL--NMRAAMQSMTNHTDQVWGVSFRPLG 297
           S     +     + D   I    ++  V +++   N    +  +  H  QV GV + P  
Sbjct: 4   SFLVEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDS 63

Query: 298 GRVVSVSDDKSISLYEY 314
            R+V+   D++  ++  
Sbjct: 64  NRIVTCGTDRNAYVWTL 80

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 36.0 bits (81), Expect = 0.004
 Identities = 6/45 (13%), Positives = 21/45 (46%)

Query: 7   KSVENAHEESVWAVTWVPATETRPALLLTGSLDETVKLWRPDDMQ 51
             +++ H+ SV  ++ +   + + +   T  +D  + +W    ++
Sbjct: 318 AGLDSLHKNSVSQISVLSGGKAKCSQFCTTGMDGGMSIWDVRSLE 362

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 62.1 bits (149), Expect = 2e-11
 Identities = 32/298 (10%), Positives = 81/298 (27%), Gaps = 22/298 (7%)

Query: 21  TWVPATETRPALLLTGSLDETVKLWRPDDMQLERTNTGHCLGVVSVAAHPSGI------- 73
           +++    T  + +  G   + V+++ P  +               V  +P          
Sbjct: 59  SFIAHASTVFSRIARGERTDYVEVFDPVTLLPTADIELPDAPRFLVGTYPWMTSLTPDGK 118

Query: 74  --IAASASLDSFVRVFDVDTNASIATLEA-------SPSEVWQMQFDPKGTTLAVAGGGS 124
             +    S    V V D++  A    L+          +          G+   VA G  
Sbjct: 119 TLLFYQFSPAPAVGVVDLEGKAFKRMLDVPDCYHIFPTAPDTFFMHCRDGSLAKVAFGTE 178

Query: 125 ASVKLWDTATWNLIATLSIPRPEGLKPTDK---SSSKKFVLSVAWSPDGRRIACGSMDGT 181
            + ++  T  ++      I  P   +   +    +    +  +  S    +        T
Sbjct: 179 GTPEITHTEVFHPEDEFLINHPAYSQKAGRLVWPTYTGKIHQIDLSSGDAKFLPAVEALT 238

Query: 182 ISVFDVTRAKFLHHLEGHFMPVRSLVYSPVDPRVLFSASDDTHVHMYDAEGKSLVTAMSG 241
            +               +   +  +             +    V + DA+    +     
Sbjct: 239 EAERADGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGERLAKFEM 298

Query: 242 HASWVLSVDASPDGA--AITTGSSDRTVKLWDLNMRAAMQSMTNHTDQVWGVSFRPLG 297
               + S++ S D         + D+T+ + D      ++S+         ++   +G
Sbjct: 299 G-HEIDSINVSQDEKPLLYALSTGDKTLYIHDAESGEELRSVNQLGHGPQVITTADMG 355

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 59.8 bits (143), Expect = 9e-11
 Identities = 30/254 (11%), Positives = 69/254 (27%), Gaps = 33/254 (12%)

Query: 76  ASASLDSFVRVFDVDTNASIATLEASPSEVWQMQFDPKGTTLAVA---------GGGSAS 126
           A  +  +   V D +    I  ++     +        G+ +A A         G  +  
Sbjct: 22  AHFAAVTQQFVIDGEAGRVIGMIDG--GFLPNPVVADDGSFIAHASTVFSRIARGERTDY 79

Query: 127 VKLWDTATWNLIATLSIPRPEGLKPTDKSSSKKFVLSVAWSPDGRRIACGSMDG--TISV 184
           V+++D  T    A + +P         +     +    + +PDG+ +          + V
Sbjct: 80  VEVFDPVTLLPTADIELPD------APRFLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGV 133

Query: 185 FDVTRAKFLHHLEGH-------FMPVRSLVYSPVDPRVLFSASDDTHVHMYDAEGKSLVT 237
            D+    F   L+           P    ++         +   +    +   E      
Sbjct: 134 VDLEGKAFKRMLDVPDCYHIFPTAPDTFFMHCRDGSLAKVAFGTEGTPEITHTE-----V 188

Query: 238 AMSGHASWVLSVDASPDGAAITTGSSDRTVKLWDL--NMRAAMQSMTNHTDQVWGVSFRP 295
                   +     S     +   +    +   DL       + ++   T+      +RP
Sbjct: 189 FHPEDEFLINHPAYSQKAGRLVWPTYTGKIHQIDLSSGDAKFLPAVEALTEAERADGWRP 248

Query: 296 LGGRVVSVSDDKSI 309
            G + V+       
Sbjct: 249 GGWQQVAYHRALDR 262

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 60.4 bits (144), Expect = 4e-11
 Identities = 27/298 (9%), Positives = 69/298 (23%), Gaps = 35/298 (11%)

Query: 6   LKSVENAHEESVWAVTWVPATETRPALLLTGSLDETVKLWRPDDMQLERT-NTGHCLGVV 64
           +  V   H +++ A++     +     L +   +  +  W        R     H   + 
Sbjct: 4   IDQVRYGHNKAITALSSSADGK----TLFSADAEGHINSWDISTGISNRVFPDVHATMIT 59

Query: 65  SVAAHPSGIIAASASLDSFVRVFDVDTNASIATLEASPSEVWQMQFDPKGTTLAVAGGGS 124
            +     G +   +  D    V    +    +   A+      +                
Sbjct: 60  GIKTTSKGDLFTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAACY 119

Query: 125 ASVKLWDTATWNLIATLSIPRPEGLKP----------------------------TDKSS 156
             + ++       +          L                              T    
Sbjct: 120 KHIAIYSHGKLTEVPISYNSSCVALSNDKQFVAVGGQDSKVHVYKLSGASVSEVKTIVHP 179

Query: 157 SKKFVLSVAWSPDGRRIACGSMDGTISVFDVTRAKFLHHLEGHFMPVRSLVYSPVDPRVL 216
           ++   ++ + +         S                 +         + V    D   L
Sbjct: 180 AEITSVAFSNNGAFLVATDQSRKVIPYSVANNFELAHTNSWTFHTAKVACVSWSPDNVRL 239

Query: 217 FSASDDTHVHMYDAEGKSL--VTAMSGHASWVLSVDASPDGAAITTGSSDRTVKLWDL 272
            + S D  V +++    S   +     HA   ++     +   I +   D  +K W++
Sbjct: 240 ATGSLDNSVIVWNMNKPSDHPIIIKGAHAMSSVNSVIWLNETTIVSAGQDSNIKFWNV 297

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 57.7 bits (137), Expect = 4e-10
 Identities = 39/295 (13%), Positives = 86/295 (29%), Gaps = 35/295 (11%)

Query: 51  QLERTNTGHCLGVVSVAAHPSGIIAASASLDSFVRVFDVDTNASIATL-EASPSEVWQMQ 109
            +++   GH   + ++++   G    SA  +  +  +D+ T  S     +   + +  ++
Sbjct: 3   SIDQVRYGHNKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIK 62

Query: 110 FDPKGTTLAVAGGGSASVKLWDTATWNLIATLSIPRPEGLKPTDKSSSKKFVLSVAWSPD 169
              KG            +K+       + ++ ++      +P   + S    ++VA    
Sbjct: 63  TTSKGDL--FTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAACYK 120

Query: 170 GRRIAC--------GSMDGTISVFDVTRAKFLHHLEGHFMPVRSLVYSPVDPRVLFSASD 221
              I           S + +       +       +   + V  L  + V          
Sbjct: 121 HIAIYSHGKLTEVPISYNSSCVALSNDKQFVAVGGQDSKVHVYKLSGASVSEVKTIVHPA 180

Query: 222 DTHVHMYDAEGKSLVTAMSGHASWVLSVDAS----------------------PDGAAIT 259
           +     +   G  LV           SV  +                      PD   + 
Sbjct: 181 EITSVAFSNNGAFLVATDQSRKVIPYSVANNFELAHTNSWTFHTAKVACVSWSPDNVRLA 240

Query: 260 TGSSDRTVKLWDLNMRAAMQSMTN--HTDQVWGVSFRPLGGRVVSVSDDKSISLY 312
           TGS D +V +W++N  +    +    H               +VS   D +I  +
Sbjct: 241 TGSLDNSVIVWNMNKPSDHPIIIKGAHAMSSVNSVIWLNETTIVSAGQDSNIKFW 295

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 40.7 bits (93), Expect = 1e-04
 Identities = 9/83 (10%), Positives = 19/83 (22%), Gaps = 11/83 (13%)

Query: 106 WQMQFDPKGTTLAVAGGGSASVKLWDTATWNLIATLSIPRPEGLKPTDKSSSKKFVLSVA 165
                          G    SV +W+    +    +            K +     ++  
Sbjct: 227 VACVSWSPDNVRLATGSLDNSVIVWNMNKPSDHPIII-----------KGAHAMSSVNSV 275

Query: 166 WSPDGRRIACGSMDGTISVFDVT 188
              +   I     D  I  ++V 
Sbjct: 276 IWLNETTIVSAGQDSNIKFWNVP 298

>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]} Length = 426

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Pseudomonas aeruginosa [TaxId: 287]

 Score = 58.0 bits (139), Expect = 3e-10
 Identities = 22/178 (12%), Positives = 42/178 (23%), Gaps = 19/178 (10%)

Query: 114 GTTLAVAGGGSASVKLWDTATWNLIATLSIPRPEGLKPTDKSSSKKFVLSVAWSPDGRRI 173
               +V    +  + L D  +  ++  +                   V     S  GR +
Sbjct: 31  PNLFSVTLRDAGQIALVDGDSKKIVKVIDTG--------------YAVHISRMSASGRYL 76

Query: 174 ACGSMDGTISVFD-----VTRAKFLHHLEGHFMPVRSLVYSPVDPRVLFSASDDTHVHMY 228
                D  I + D      T+   +           S      D   +  A       + 
Sbjct: 77  LVIGRDARIDMIDLWAKEPTKVAEIKIGIEARSVESSKFKGYEDRYTIAGAYWPPQFAIM 136

Query: 229 DAEGKSLVTAMSGHASWVLSVDASPDGAAITTGSSDRTVKLWDLNMRAAMQSMTNHTD 286
           D E       +S     V +    P+       +S    +            + N+ D
Sbjct: 137 DGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKETGKVLLVNYKD 194

>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]} Length = 426

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Pseudomonas aeruginosa [TaxId: 287]

 Score = 54.6 bits (130), Expect = 4e-09
 Identities = 18/151 (11%), Positives = 34/151 (22%), Gaps = 8/151 (5%)

Query: 162 LSVAWSPDGRRIACGSMDGTISVFDVTRAKFLHHLEGHFMPVRSLVYSPVDPRVLFSASD 221
                             G I++ D    K +  ++  +        S    R L     
Sbjct: 24  QLNDLDLPNLFSVTLRDAGQIALVDGDSKKIVKVIDTGYAV-HISRMSA-SGRYLLVIGR 81

Query: 222 DTHVHMYDAEGKSL-----VTAMSGHASWVLSVDASPDG-AAITTGSSDRTVKLWDLNMR 275
           D  + M D   K       +       S   S     +    I          + D    
Sbjct: 82  DARIDMIDLWAKEPTKVAEIKIGIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETL 141

Query: 276 AAMQSMTNHTDQVWGVSFRPLGGRVVSVSDD 306
              Q ++     V   ++ P       ++  
Sbjct: 142 EPKQIVSTRGMTVDTQTYHPEPRVAAIIASH 172

>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]} Length = 426

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Pseudomonas aeruginosa [TaxId: 287]

 Score = 54.6 bits (130), Expect = 5e-09
 Identities = 31/287 (10%), Positives = 70/287 (24%), Gaps = 30/287 (10%)

Query: 32  LLLTGSLDETVKLWRPDDMQLERT-NTGHCLGVVSVAAHPSGIIAASASLDSFVRVFDVD 90
             +T      + L   D  ++ +  +TG+   V       SG        D+ + + D+ 
Sbjct: 34  FSVTLRDAGQIALVDGDSKKIVKVIDTGY--AVHISRMSASGRYLLVIGRDARIDMIDLW 91

Query: 91  TN-----ASIATLEASPSEVWQMQFDPKGTTLAVAGGGSASVKLWDTATWNLIATLSIPR 145
                  A I     + S         +               + D  T      +S   
Sbjct: 92  AKEPTKVAEIKIGIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRG 151

Query: 146 PEGLKPTDKSSSKKFVLSVAWSPDGRRIACGSMDG--TISVFDVTRAKFLHHLEGHFMPV 203
                 T     +  V ++  S +         +    + V             G    +
Sbjct: 152 MT--VDTQTYHPEPRVAAIIASHEHPEFIVNVKETGKVLLVNYKDIDNLTVTSIGAAPFL 209

Query: 204 RSLVYSPVDPRVLFSASDDTHVHMYDAEGKSLV---------------TAMSGHASWVLS 248
               +       + +A++   V + D++ + L                  +      V S
Sbjct: 210 ADGGWDSSHRYFMTAANNSNKVAVIDSKDRRLSALVDVGKTPHPGRGANFVHPKYGPVWS 269

Query: 249 VDASPDGAAITTGSSDRTVKLWDLNMRAAMQSMTNHTDQVWGVSFRP 295
                DG+    G+  +    +       +  +         +   P
Sbjct: 270 TSHLGDGSISLIGTDPKNHPQYA---WKKVAELQGQGGGSLFIKTHP 313

>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]} Length = 426

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Pseudomonas aeruginosa [TaxId: 287]

 Score = 46.5 bits (109), Expect = 2e-06
 Identities = 36/312 (11%), Positives = 75/312 (24%), Gaps = 36/312 (11%)

Query: 32  LLLTGSLDETVKLWRPDDMQLERTNT-----GHCLGVVSVAAHPSG-IIAASASLDSFVR 85
            LL    D  + +      +  +               S           A A       
Sbjct: 75  YLLVIGRDARIDMIDLWAKEPTKVAEIKIGIEARSVESSKFKGYEDRYTIAGAYWPPQFA 134

Query: 86  VFDVDTNASIATLEASPSEVWQMQFDPKGTTLAVAGGGSASVKLWDTATWNLIATLSIPR 145
           + D +T      +      V    + P+    A+         + +      +  ++   
Sbjct: 135 IMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKETGKVLLVNYKD 194

Query: 146 PEGLKPTDKSSSKKFVLSVAWSPDGRRIACGSMDGTISVFDVTRAKFLHHLEGH------ 199
            + L  T    +  F+    W    R     + +        ++ + L  L         
Sbjct: 195 IDNLTVTS-IGAAPFLADGGWDSSHRYFMTAANNSNKVAVIDSKDRRLSALVDVGKTPHP 253

Query: 200 ------FMPVRSLVYSPVDPRVLFSASDDTHVHMYDAEGKSLVTAMSGHASWVLSVDASP 253
                   P    V+S         +   T    +       V  + G     L +   P
Sbjct: 254 GRGANFVHPKYGPVWSTSHLGDGSISLIGTDPKNHPQYAWKKVAELQGQGGGSLFIKTHP 313

Query: 254 DGAAI-------TTGSSDRTVKLWDLNMRAAMQSMTNHTDQ---------VWGVSFRPLG 297
             + +             ++V ++DL    A   +    +          V    +   G
Sbjct: 314 KSSHLYVDTTFNPDARISQSVAVFDLKNLDAKYQVLPIAEWADLGEGAKRVVQPEYNKRG 373

Query: 298 GRV-VSVSDDKS 308
             V  SV + K+
Sbjct: 374 DEVWFSVWNGKN 385

>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]} Length = 426

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Pseudomonas aeruginosa [TaxId: 287]

 Score = 44.9 bits (105), Expect = 6e-06
 Identities = 24/132 (18%), Positives = 40/132 (30%), Gaps = 22/132 (16%)

Query: 43  KLWRPDDMQLERTNTGHCLGVVSVAAHPSGIIAA-------SASLDSFVRVFDVDT---- 91
           K       +      G   G + +  HP              A +   V VFD+      
Sbjct: 286 KNHPQYAWKKVAELQGQGGGSLFIKTHPKSSHLYVDTTFNPDARISQSVAVFDLKNLDAK 345

Query: 92  -----NASIATLEASPSEVWQMQFDPKGTTLAVAGGGSAS----VKLWDTATWNLIATLS 142
                 A  A L      V Q +++ +G  +  +     +    + + D  T  L A   
Sbjct: 346 YQVLPIAEWADLGEGAKRVVQPEYNKRGDEVWFSVWNGKNDSSALVVVDDKTLKLKAV-- 403

Query: 143 IPRPEGLKPTDK 154
           +  P  + PT K
Sbjct: 404 VKDPRLITPTGK 415

>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]} Length = 426

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Pseudomonas aeruginosa [TaxId: 287]

 Score = 38.8 bits (89), Expect = 7e-04
 Identities = 22/152 (14%), Positives = 45/152 (29%), Gaps = 18/152 (11%)

Query: 59  HCLGVVSVAAHPSGIIAASASLDSFVRVFDVDTNASIATLEASPSEVWQMQFDPKGTTLA 118
               V S +    G I+   +       +       +A L+        ++  PK + L 
Sbjct: 263 KYGPVWSTSHLGDGSISLIGTDPKNHPQYAWKK---VAELQGQGGGSLFIKTHPKSSHLY 319

Query: 119 VA------GGGSASVKLWDTATWNLIATLSIPRPEGLKPTDKSSSKKFVLSVAWSPDGRR 172
           V          S SV ++D    +    + +P  E     +     K V+   ++  G  
Sbjct: 320 VDTTFNPDARISQSVAVFDLKNLDAKYQV-LPIAEWADLGE---GAKRVVQPEYNKRGDE 375

Query: 173 I-----ACGSMDGTISVFDVTRAKFLHHLEGH 199
           +        +    + V D    K    ++  
Sbjct: 376 VWFSVWNGKNDSSALVVVDDKTLKLKAVVKDP 407

>d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]} Length = 441

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Pseudomonas nautica [TaxId: 2743]

 Score = 58.0 bits (140), Expect = 4e-10
 Identities = 38/317 (11%), Positives = 64/317 (20%), Gaps = 63/317 (19%)

Query: 32  LLLTGSLDETVKLWRPDDMQLERTNT---------------GHCLGVVSVAAHPSGIIAA 76
           L +    +  V   R D M+ ++                       V   A         
Sbjct: 86  LFINDKANTRVARIRLDIMKTDKITHIPNVQAIHGLRLQKVPKTNYVFCNAEFVIPQPND 145

Query: 77  SASLD-----SFVRVFDVDTNASIATLEASPSEVWQMQFDPKGTTLAVAGGGSASVKLWD 131
                     +     D +T      +    +       D  G         S       
Sbjct: 146 GTDFSLDNSYTMFTAIDAETMDVAWQVIVDGNLDN-TDADYTGKYATSTCYNSERAVDLA 204

Query: 132 TATWNLIATLSIPRPEGLKPTDKSSSKKFVLSVAWSPDGRRIACGSMDGTISVFDVTRAK 191
               N    + +   E                 A    G     G       V     ++
Sbjct: 205 GTMRNDRDWVVVFNVER--------------IAAAVKAGNFKTIGD-SKVPVVDGRGESE 249

Query: 192 FLHHLEGHFMPVRSLVYSPVDPRVLFSASDDTHVHMYDAE-----------GKSLVTAMS 240
           F  ++     P   L  SP     + +      V +   +            +  + A  
Sbjct: 250 FTRYIPVPKNPH-GLNTSPDGKYFIANGKLSPTVSVIAIDKLDDLFEDKIELRDTIVAEP 308

Query: 241 GHASWVLSVDASPDGAAITTGSSDRTVKLWDLNM---------------RAAMQSMTNHT 285
                 L       G A TT   D  V  W++                 +  +Q    H 
Sbjct: 309 ELGLGPLHTTFDGRGNAYTTLFIDSQVCKWNIADAIKHYNGDRVNYIRQKLDVQYQPGHN 368

Query: 286 DQVWGVSFRPLGGRVVS 302
                 S    G  +V 
Sbjct: 369 HASLTESRDADGKWLVV 385

>d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]} Length = 441

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Pseudomonas nautica [TaxId: 2743]

 Score = 41.8 bits (98), Expect = 8e-05
 Identities = 39/310 (12%), Positives = 68/310 (21%), Gaps = 55/310 (17%)

Query: 35  TGSLDETVKLWRPDDMQLERTNTGHCLGVVSVAAHPSG-IIAASASLDSFVRVFDVDTNA 93
            G LDE    W           +G   G V V   PS   +      +         TN 
Sbjct: 5   PGELDEYYGFW-----------SGGHQGEVRVLGVPSMRELMRIPVFNVDSATGWGITNE 53

Query: 94  SIATLEASPSEVW---------QMQFDPKGTTLAVAGGGSASVKLWDTATWNLIATLSIP 144
           S   L      +                 G  L +    +  V               IP
Sbjct: 54  SKEILGGDQQYLNGDCHHPHISMTDGRYDGKYLFINDKANTRVARIRLDIMKTDKITHIP 113

Query: 145 RPEGLKPTDKSSSKKFVLSVAWSPDGRRIACGSM---------DGTISVFDVTRAKFLHH 195
             +             +  +      +                DGT    D +   F   
Sbjct: 114 NVQA------------IHGLRLQKVPKTNYVFCNAEFVIPQPNDGTDFSLDNSYTMF-TA 160

Query: 196 LEGHFMPVRSLVYSPVDP---------RVLFSASDDTHVHMYDAEGKSLVTAMSGHASWV 246
           ++   M V   V    +          +   S   ++   +  A             +  
Sbjct: 161 IDAETMDVAWQVIVDGNLDNTDADYTGKYATSTCYNSERAVDLAGTMRNDRDWVVVFNVE 220

Query: 247 LSVDASPDGAAITTGSSDRTVKLWDLNMRAAMQSMTNHTDQVWGVSFRPLGGR-VVSVSD 305
               A   G   T G S     +         + +        G++  P G   + +   
Sbjct: 221 RIAAAVKAGNFKTIGDSK-VPVVDGRGESEFTRYIPVP-KNPHGLNTSPDGKYFIANGKL 278

Query: 306 DKSISLYEYS 315
             ++S+    
Sbjct: 279 SPTVSVIAID 288

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 325

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 56.8 bits (135), Expect = 8e-10
 Identities = 47/331 (14%), Positives = 95/331 (28%), Gaps = 35/331 (10%)

Query: 3   FAGLKSVENAHEESVWAVTWVPATETRPALLLTGSLDETVKLWRPDDMQLE--RTNTGHC 60
                S +         +++ P T     +         V+     D ++      TGH 
Sbjct: 9   IPPQPSTQRNF---TTHLSYDPTTNA---IAYPCGKSAFVRCLDDGDSKVPPVVQFTGHG 62

Query: 61  LGVVSVAA---HPSGIIAASASLDSFVRVFDVDTNASIATL--------EASPSEVWQMQ 109
             VV+              S      V V+    +    ++        +     +  + 
Sbjct: 63  SSVVTTVKFSPIKGSQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDIS 122

Query: 110 FDPKGTTLAVAGGG-SASVKLWDTATWNLIATLSIPRPEGLKPTDKSSSKKFVLSVAWSP 168
           +D +G  L V G G           + N +  +S           K S     ++V    
Sbjct: 123 WDFEGRRLCVVGEGRDNFGVFISWDSGNSLGEVSGHSQRINACHLKQSRPMRSMTVGDDG 182

Query: 169 DGRRIACGSMDGTISVFDVTRAKFLHHLEGHFMPVRSLVYSPVDPRVLFSASDDTHVHMY 228
                                +            VR + +SP     + +   D  +  +
Sbjct: 183 ---------SVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCF 233

Query: 229 DAEGKSLVTAMSGHASWVLSVDASP---DGAAITTGSSDRTVKLWDLNMRAAMQSMTNHT 285
           D +    +  +      V     +    D     T  +D T+++WD+     +Q  T   
Sbjct: 234 DGKSGEFLKYIEDDQEPVQGGIFALSWLDSQKFATVGADATIRVWDVTTSKCVQKWTLDK 293

Query: 286 DQVWGVSFRPL---GGRVVSVSDDKSISLYE 313
            Q+       +    GR++S+S D +++ YE
Sbjct: 294 QQLGNQQVGVVATGNGRIISLSLDGTLNFYE 324

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 325

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 53.4 bits (126), Expect = 1e-08
 Identities = 33/277 (11%), Positives = 68/277 (24%), Gaps = 8/277 (2%)

Query: 2   KFAGLKSVENAHEESVWAVTWVPATETRPALLLTGSLDETVKLWRPDDMQLERTNTGHCL 61
           K   +          V  V + P   ++   L +G     V +W     +   +   +  
Sbjct: 51  KVPPVVQFTGHGSSVVTTVKFSPIKGSQ--YLCSGDESGKVIVWGWTFDKESNSVEVNVK 108

Query: 62  GVVSVAAHPSGIIAASASLDSFVRVFDVDTNASIATLEASPSEVWQMQFDPKGTTLAVAG 121
               V A P   I+          V +   N  +     S + + ++    +        
Sbjct: 109 SEFQVLAGPISDISWDFEGRRLCVVGEGRDNFGVFISWDSGNSLGEVSGHSQRINACHLK 168

Query: 122 GGSASVKLWDTATWNLIATLSIPRPEGLKPTDKSSSKKFVLSVAWSPDGRRIACGSMDGT 181
                  +      +++     P               FV  V +SPD            
Sbjct: 169 QSRPMRSMTVGDDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDR 228

Query: 182 ISVFDVTRAKFLHHLEGHFMPVRSLVYSPV---DPRVLFSASDDTHVHMYDAEGKSLVTA 238
                  ++                    +   D +   +   D  + ++D      V  
Sbjct: 229 KISCFDGKSGEFLKYIEDDQEPVQGGIFALSWLDSQKFATVGADATIRVWDVTTSKCVQK 288

Query: 239 MSGHAS--WVLSVDASPDGAA-ITTGSSDRTVKLWDL 272
            +          V     G   I + S D T+  ++L
Sbjct: 289 WTLDKQQLGNQQVGVVATGNGRIISLSLDGTLNFYEL 325

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]} Length = 301

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

 Score = 49.1 bits (115), Expect = 2e-07
 Identities = 47/267 (17%), Positives = 88/267 (32%), Gaps = 33/267 (12%)

Query: 77  SASLDSFVRVFDVDTNASIATLEASPSEVWQMQFDPKGTTLAVAGGGSASVKLWDTATWN 136
           + S    + V DV +N   AT+    S        P GT + VA   S  V + DTAT N
Sbjct: 7   ANSESDNISVIDVTSNKVTATIPV-GSNPMGAVISPDGTKVYVANAHSNDVSIIDTATNN 65

Query: 137 L----------------------------IATLSIPRPEGLKPTDKSSSKKFVLSVAWSP 168
           +                             +TLS+             + K  L +A SP
Sbjct: 66  VIATVPAGSSPQGVAVSPDGKQVYVTNMASSTLSVIDTTSNTVAGTVKTGKSPLGLALSP 125

Query: 169 DGRRIACGSMDGTISVFDVTRAKFLHHLEGHFMPVRSLVYSPVDPRVLFSASDDTHVHMY 228
           DG+++   +          T  K + +        + +  +P D   ++ A+ D+     
Sbjct: 126 DGKKLYVTNNGDKTVSVINTVTKAVINTVSVGRSPKGIAVTP-DGTKVYVANFDSMSISV 184

Query: 229 DAEGKSLVTAMSGHASWVLSVDASPDGAAITTGSSDRTVKLWDLNMRAAMQSMTN--HTD 286
                + V       +    +  +P+G      + D+      +      +         
Sbjct: 185 IDTVTNSVIDTVKVEAAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTNKITARIPVGP 244

Query: 287 QVWGVSFRPLGGRV-VSVSDDKSISLY 312
              G++  P G +V V++S   ++S+ 
Sbjct: 245 DPAGIAVTPDGKKVYVALSFCNTVSVI 271

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]} Length = 301

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

 Score = 46.8 bits (109), Expect = 1e-06
 Identities = 22/174 (12%), Positives = 51/174 (29%), Gaps = 17/174 (9%)

Query: 119 VAGGGSASVKLWDTATWNLIATLSIPRPEGLKPTDKSSSKKFVLSVAWSPDGRRI-ACGS 177
           +A   S ++ + D  +  + AT+ +                  +    SPDG ++    +
Sbjct: 6   IANSESDNISVIDVTSNKVTATIPVG--------------SNPMGAVISPDGTKVYVANA 51

Query: 178 MDGTISVFDVTRAKFLHHLEGHFMPVRSLVYSPVDPRVLFSASDDTHVHMYDAEGKSLVT 237
               +S+ D      +  +     P    V        + + +  T   +        V 
Sbjct: 52  HSNDVSIIDTATNNVIATVPAGSSPQGVAVSPDGKQVYVTNMASSTLSVIDTTSNT--VA 109

Query: 238 AMSGHASWVLSVDASPDGAAITTGSSDRTVKLWDLNMRAAMQSMTNHTDQVWGV 291
                    L +  SPDG  +   ++          +  A+ +  +      G+
Sbjct: 110 GTVKTGKSPLGLALSPDGKKLYVTNNGDKTVSVINTVTKAVINTVSVGRSPKGI 163

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]} Length = 301

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

 Score = 44.5 bits (103), Expect = 8e-06
 Identities = 15/57 (26%), Positives = 25/57 (43%), Gaps = 1/57 (1%)

Query: 87  FDVDTNASIATLEASPSEVWQMQFDPKGTTLAVAGGGSASVKLWDTATWNLIATLSI 143
            D  TN   A +     +   +   P G  + VA     +V + DTAT  + AT+++
Sbjct: 229 IDTGTNKITARIPVG-PDPAGIAVTPDGKKVYVALSFCNTVSVIDTATNTITATMAV 284

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]} Length = 301

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

 Score = 44.1 bits (102), Expect = 1e-05
 Identities = 37/269 (13%), Positives = 68/269 (25%), Gaps = 31/269 (11%)

Query: 35  TGSLDETVKLWRPDDMQLERTNTGHCLGVVSVAAHPSG-IIAASASLDSFVRVFDVDTNA 93
             S  + + +      ++  T        +     P G  +  + +  + V + D  TN 
Sbjct: 7   ANSESDNISVIDVTSNKVTATIPVG-SNPMGAVISPDGTKVYVANAHSNDVSIIDTATNN 65

Query: 94  SIATLEASPSEVWQMQFDPKGTTLAVAGGGSASVKLWDTATWNLIATLSIPRPEGL---- 149
            IAT+ A  S                    S    +  T+        +   P GL    
Sbjct: 66  VIATVPAGSSPQGVAVSPDGKQVYVTNMASSTLSVIDTTSNTVAGTVKTGKSPLGLALSP 125

Query: 150 -----------------------KPTDKSSSKKFVLSVAWSPDGRRIACGSMDGTISVFD 186
                                     +  S  +    +A +PDG ++   + D       
Sbjct: 126 DGKKLYVTNNGDKTVSVINTVTKAVINTVSVGRSPKGIAVTPDGTKVYVANFDSMSISVI 185

Query: 187 VTRAKFLHHLEGHF-MPVRSLVYSPVDPRVLFSASDDTHVHMYDAEGKSLVTAMSGHASW 245
            T    +         P    V        + +     +       G + +TA       
Sbjct: 186 DTVTNSVIDTVKVEAAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTNKITARIPVGPD 245

Query: 246 VLSVDASPDGA-AITTGSSDRTVKLWDLN 273
              +  +PDG       S   TV + D  
Sbjct: 246 PAGIAVTPDGKKVYVALSFCNTVSVIDTA 274

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]} Length = 301

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

 Score = 39.9 bits (91), Expect = 3e-04
 Identities = 15/74 (20%), Positives = 26/74 (35%), Gaps = 1/74 (1%)

Query: 130 WDTATWNLIATLSIPRPEGLKPTDKSSSKKFVLSVAWSPDGRRI-ACGSMDGTISVFDVT 188
           + T       T+S+      K T +         +A +PDG+++    S   T+SV D  
Sbjct: 215 YVTNVDKYFNTVSMIDTGTNKITARIPVGPDPAGIAVTPDGKKVYVALSFCNTVSVIDTA 274

Query: 189 RAKFLHHLEGHFMP 202
                  +     P
Sbjct: 275 TNTITATMAVGKNP 288

>d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]} Length = 333

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Putative isomerase YbhE
family: Putative isomerase YbhE
domain: Putative isomerase YbhE
species: Escherichia coli [TaxId: 562]

 Score = 47.9 bits (112), Expect = 7e-07
 Identities = 22/231 (9%), Positives = 59/231 (25%), Gaps = 16/231 (6%)

Query: 73  IIAASASLDSFVRVFDVDTNASIATLE--ASPSEVWQMQFDPKGTTLAVAGGGSASVKLW 130
            +  ++     + V++++   ++   +    P +V  M   P    L V       V  +
Sbjct: 5   TVYIASPESQQIHVWNLNHEGALTLTQVVDVPGQVQPMVVSPDKRYLYVGVRPEFRVLAY 64

Query: 131 DTATWNLIATLSIPRPEGLKPTDKSSSKKFVLSVAWSPDGRRIACGSMD---GTISVFDV 187
             A  +   T +         T           ++    G+ +  GS +    +++  + 
Sbjct: 65  RIAPDDGALTFAAESALPGSLT----------HISTDHQGQFVFVGSYNAGNVSVTRLED 114

Query: 188 TRAKFLHHLEGHFMPVRSLVYSPVDPRVLFSASDDTHVHMYDAEGKSLVTAMSGHASWVL 247
                +  +        S   SP +  +   A     + ++       + A         
Sbjct: 115 GLPVGVVDVVEGLDGCHSANISPDNRTLWVPALKQDRICLFTVSDDGHLVAQDPAEVTT- 173

Query: 248 SVDASPDGAAITTGSSDRTVKLWDLNMRAAMQSMTNHTDQVWGVSFRPLGG 298
              A P                   +     +    H +     +   +  
Sbjct: 174 VEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPE 224

>d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]} Length = 333

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Putative isomerase YbhE
family: Putative isomerase YbhE
domain: Putative isomerase YbhE
species: Escherichia coli [TaxId: 562]

 Score = 36.7 bits (83), Expect = 0.002
 Identities = 15/109 (13%), Positives = 27/109 (24%), Gaps = 5/109 (4%)

Query: 45  WRPDDMQLERTNTGHCLGVVSVAAHPSGIIAASASLDSFVRVFDVDTNASIATLEASPS- 103
                  +    +                + A     S + VF V  + S+ + E     
Sbjct: 215 CVQTLDMMPENFSDTRWAADIHITPDGRHLYACDRTASLITVFSVSEDGSVLSKEGFQPT 274

Query: 104 --EVWQMQFDPKGTTLAVAGGGSASVKLW--DTATWNLIATLSIPRPEG 148
             +      D  G  L  AG  S  + ++        L         +G
Sbjct: 275 ETQPRGFNVDHSGKYLIAAGQKSHHISVYEIVGEQGLLHEKGRYAVGQG 323

>d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]} Length = 365

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme
family: 3-carboxy-cis,cis-mucoante lactonizing enzyme
domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme
species: Neurospora crassa [TaxId: 5141]

 Score = 43.3 bits (101), Expect = 2e-05
 Identities = 34/338 (10%), Positives = 79/338 (23%), Gaps = 54/338 (15%)

Query: 26  TETRPALLLTGSLD-ETVKLWRPDDMQLERTNTGHCLGVVSVAAHPSGIIAASASLDSFV 84
           T T P  + T   D E +         ++RT       +  +           A++    
Sbjct: 9   TWTPPGAIFTVQFDDEKLTCKL-----IKRTEIPQDEPISWMTFDHERKNIYGAAMKK-W 62

Query: 85  RVFDVDTNASIATLEASPS--EVWQMQFDPKGTT--LAVAGGGSASVKLW----DTATWN 136
             F V +   I    + P          D       L  A     +V            N
Sbjct: 63  SSFAVKSPTEIVHEASHPIGGHPRANDADTNTRAIFLLAAKQPPYAVYANPFYKFAGYGN 122

Query: 137 LIATLSIPRPEGLKPTDKSSSKKFVLSVAWSPDGRRI-ACGSMDGTISVFDVTRAKFLHH 195
           + +     + E      +      +  + + P    + +       +       +  +  
Sbjct: 123 VFSVSETGKLEKNVQNYEYQENTGIHGMVFDPTETYLYSADLTANKLWTHRKLASGEVEL 182

Query: 196 LEGHFMP-----VRSLVYSPVDPRVLFSASDDTHVHMYDAEGKSLVTAMSGHASWVLSVD 250
           +     P      R +   P    +         +  Y  +  + +   + H+  ++   
Sbjct: 183 VGSVDAPDPGDHPRWVAMHPTGNYLYALMEAGNRICEYVIDPATHMPVYTHHSFPLIPPG 242

Query: 251 ASPDGAAITTGSSDRTVKLWDLNMRAAMQSMTNHT------------------------- 285
                     G     V     + +    S   +                          
Sbjct: 243 IPDRDPETGKGLYRADVCALTFSGKYMFASSRANKFELQGYIAGFKLRDCGSIEKQLFLS 302

Query: 286 ------DQVWGVSFRPLGGRVVSVSDDKS--ISLYEYS 315
                      VS  P     ++++DD+   + +Y + 
Sbjct: 303 PTPTSGGHSNAVSPCPWSDEWMAITDDQEGWLEIYRWK 340

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	315
d1vyhc1	317	Platelet-activating factor acetylhydrolase IB subu	100.0
d1gxra_	337	Groucho/tle1, C-terminal domain {Human (Homo sapie	100.0
d1erja_	388	Tup1, C-terminal domain {Baker's yeast (Saccharomy	100.0
d1nr0a1	311	Actin interacting protein 1 {Nematode (Caenorhabdi	100.0
d1tbga_	340	beta1-subunit of the signal-transducing G protein	100.0
d1k8kc_	371	Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur	100.0
d1nr0a2	299	Actin interacting protein 1 {Nematode (Caenorhabdi	100.0
d1nr0a1	311	Actin interacting protein 1 {Nematode (Caenorhabdi	100.0
d2ovrb2	342	F-box/WD repeat-containing protein 7, FBXW7 {Human	100.0
d1nexb2	355	Cdc4 propeller domain {Baker's yeast (Saccharomyce	100.0
d1gxra_	337	Groucho/tle1, C-terminal domain {Human (Homo sapie	100.0
d1vyhc1	317	Platelet-activating factor acetylhydrolase IB subu	100.0
d1pgua1	325	Actin interacting protein 1 {Baker's yeast (Saccha	100.0
d1k8kc_	371	Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur	100.0
d1pgua2	287	Actin interacting protein 1 {Baker's yeast (Saccha	100.0
d1p22a2	293	F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom	100.0
d1yfqa_	342	Cell cycle arrest protein BUB3 {Baker's yeast (Sac	100.0
d1sq9a_	393	Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac	100.0
d1erja_	388	Tup1, C-terminal domain {Baker's yeast (Saccharomy	100.0
d1nr0a2	299	Actin interacting protein 1 {Nematode (Caenorhabdi	100.0
d1pgua1	325	Actin interacting protein 1 {Baker's yeast (Saccha	100.0
d1tbga_	340	beta1-subunit of the signal-transducing G protein	100.0
d2ovrb2	342	F-box/WD repeat-containing protein 7, FBXW7 {Human	100.0
d1nexb2	355	Cdc4 propeller domain {Baker's yeast (Saccharomyce	100.0
d1sq9a_	393	Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac	100.0
d1yfqa_	342	Cell cycle arrest protein BUB3 {Baker's yeast (Sac	100.0
d1p22a2	293	F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom	99.98
d1pgua2	287	Actin interacting protein 1 {Baker's yeast (Saccha	99.97
d1k32a3	360	Tricorn protease domain 2 {Archaeon Thermoplasma a	99.97
d1l0qa2	301	Surface layer protein {Archaeon Methanosarcina maz	99.97
d1hzua2	426	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.97
d1k32a3	360	Tricorn protease domain 2 {Archaeon Thermoplasma a	99.96
d1qksa2	432	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.96
d1pbyb_	337	Quinohemoprotein amine dehydrogenase B chain {Para	99.95
d1jmxb_	346	Quinohemoprotein amine dehydrogenase B chain {Pseu	99.93
d1l0qa2	301	Surface layer protein {Archaeon Methanosarcina maz	99.93
d1hzua2	426	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.93
d1ri6a_	333	Putative isomerase YbhE {Escherichia coli [TaxId:	99.91
d2madh_	373	Methylamine dehydrogenase, H-chain {Gram negative	99.89
d1pbyb_	337	Quinohemoprotein amine dehydrogenase B chain {Para	99.88
d1qksa2	432	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.88
d2bbkh_	355	Methylamine dehydrogenase, H-chain {Paracoccus den	99.84
d2madh_	373	Methylamine dehydrogenase, H-chain {Gram negative	99.81
d1jmxb_	346	Quinohemoprotein amine dehydrogenase B chain {Pseu	99.81
d2bbkh_	355	Methylamine dehydrogenase, H-chain {Paracoccus den	99.79
d1ri6a_	333	Putative isomerase YbhE {Escherichia coli [TaxId:	99.78
d1mdah_	368	Methylamine dehydrogenase, H-chain {Paracoccus den	99.73
d1qnia2	441	Nitrous oxide reductase, N-terminal domain {Pseudo	99.72
d1mdah_	368	Methylamine dehydrogenase, H-chain {Paracoccus den	99.63
d2bgra1	470	Dipeptidyl peptidase IV/CD26, N-terminal domain {P	99.58
d1qnia2	441	Nitrous oxide reductase, N-terminal domain {Pseudo	99.55
d1rwia_	260	Serine/threonine-protein kinase PknD {Mycobacteriu	99.52
d2bgra1	470	Dipeptidyl peptidase IV/CD26, N-terminal domain {P	99.46
d1jofa_	365	3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu	99.43
d1q7fa_	279	Brain tumor cg10719-pa {Fruit fly (Drosophila mela	99.4
d2p4oa1	302	Hypothetical protein All0351 homologue {Nostoc pun	99.36
d1rwia_	260	Serine/threonine-protein kinase PknD {Mycobacteriu	99.35
d2dg1a1	319	Lactonase Drp35 {Staphylococcus aureus [TaxId: 128	99.28
d1pjxa_	314	Diisopropylfluorophosphatase (phosphotriesterase,	99.26
d2hqsa1	269	TolB, C-terminal domain {Escherichia coli [TaxId:	99.25
d1pjxa_	314	Diisopropylfluorophosphatase (phosphotriesterase,	99.21
d2hqsa1	269	TolB, C-terminal domain {Escherichia coli [TaxId:	99.19
d2p4oa1	302	Hypothetical protein All0351 homologue {Nostoc pun	99.18
d1q7fa_	279	Brain tumor cg10719-pa {Fruit fly (Drosophila mela	99.17
d1jofa_	365	3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu	99.07
d2dg1a1	319	Lactonase Drp35 {Staphylococcus aureus [TaxId: 128	98.99
d2ghsa1	295	Regucalcin {Agrobacterium tumefaciens [TaxId: 358]	98.85
d1xfda1	465	Dipeptidyl aminopeptidase-like protein 6, DPP6, N-	98.75
d1xfda1	465	Dipeptidyl aminopeptidase-like protein 6, DPP6, N-	98.72
d1k32a2	281	Tricorn protease N-terminal domain {Archaeon Therm	98.69
d2ghsa1	295	Regucalcin {Agrobacterium tumefaciens [TaxId: 358]	98.41
d1k32a2	281	Tricorn protease N-terminal domain {Archaeon Therm	98.36
d1fwxa2	459	Nitrous oxide reductase, N-terminal domain {Paraco	98.26
d1fwxa2	459	Nitrous oxide reductase, N-terminal domain {Paraco	98.16
d1npea_	263	Nidogen {Mouse (Mus musculus) [TaxId: 10090]}	98.11
d1npea_	263	Nidogen {Mouse (Mus musculus) [TaxId: 10090]}	98.1
d1ijqa1	266	Low density lipoprotein (LDL) receptor {Human (Hom	98.09
d1k3ia3	387	Galactose oxidase, central domain {Fungi (Fusarium	98.07
d1ijqa1	266	Low density lipoprotein (LDL) receptor {Human (Hom	97.77
d2ad6a1	571	Methanol dehydrogenase, heavy chain {Methylophilus	97.44
d1kv9a2	560	Quinoprotein alcohol dehydrogenase, N-terminal dom	97.42
d1kb0a2	573	Quinoprotein alcohol dehydrogenase, N-terminal dom	97.24
d1k3ia3	387	Galactose oxidase, central domain {Fungi (Fusarium	97.13
d1utca2	327	Clathrin heavy-chain terminal domain {Rat (Rattus	97.1
d1w6sa_	596	Methanol dehydrogenase, heavy chain {Methylobacter	97.03
d1h6la_	353	Thermostable phytase (3-phytase) {Bacillus amyloli	96.9
d2ad6a1	571	Methanol dehydrogenase, heavy chain {Methylophilus	96.73
d1kv9a2	560	Quinoprotein alcohol dehydrogenase, N-terminal dom	96.19
d1w6sa_	596	Methanol dehydrogenase, heavy chain {Methylobacter	95.66
d1flga_	582	Ethanol dehydrogenase {Pseudomonas aeruginosa [Tax	94.61
d1kb0a2	573	Quinoprotein alcohol dehydrogenase, N-terminal dom	94.55
d2hu7a1	313	Acylamino-acid-releasing enzyme, N-terminal donain	94.54
d1v04a_	340	Serum paraoxonase/arylesterase 1, PON1 {Rabit (Ory	94.09
d1crua_	450	Soluble quinoprotein glucose dehydrogenase {Acinet	93.09
d1qfma1	430	Prolyl oligopeptidase, N-terminal domain {Pig (Sus	93.04
d1zgka1	288	Kelch-like ECH-associated protein 1, KEAP1 {Human	93.01
d1qfma1	430	Prolyl oligopeptidase, N-terminal domain {Pig (Sus	91.24
d1utca2	327	Clathrin heavy-chain terminal domain {Rat (Rattus	90.56
d1zgka1	288	Kelch-like ECH-associated protein 1, KEAP1 {Human	89.08
d1v04a_	340	Serum paraoxonase/arylesterase 1, PON1 {Rabit (Ory	87.29
d1xipa_	381	Nucleoporin NUP159 {Baker's yeast (Saccharomyces c	86.57
d1jtdb_	273	beta-lactamase inhibitor protein-II, BLIP-II {Stre	84.45
d1xipa_	381	Nucleoporin NUP159 {Baker's yeast (Saccharomyces c	82.98
d1flga_	582	Ethanol dehydrogenase {Pseudomonas aeruginosa [Tax	80.33

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=8.9e-48  Score=316.85  Aligned_cols=288  Identities=25%  Similarity=0.409  Sum_probs=265.2

Q ss_pred             hhhhccccceEEEEEeecCCCCCcEEEEeeCCCcEEEEcCCCCcceeeccccccceEEEEeCCCCCEEEEeeCCCeEEEE
Q 021247            8 SVENAHEESVWAVTWVPATETRPALLLTGSLDETVKLWRPDDMQLERTNTGHCLGVVSVAAHPSGIIAASASLDSFVRVF   87 (315)
Q Consensus         8 ~~~~~h~~~v~~v~~~~~~~~~~~~l~sgs~d~~v~~w~~~~~~~~~~~~~h~~~v~~~~~~~~g~~l~s~~~d~~i~~w   87 (315)
                      .++++|+++|++|+|+|.++    +|+|||.||+|++||..+.++...+.+|..+|.++.++|++.+++++..++.+..|
T Consensus        11 ~~L~GH~~~I~~l~~sp~~~----~l~s~s~Dg~i~iWd~~~~~~~~~~~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~   86 (317)
T d1vyhc1          11 YALSGHRSPVTRVIFHPVFS----VMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLLASCSADMTIKLW   86 (317)
T ss_dssp             CEEECCSSCEEEEEECSSSS----EEEEEESSSCEEEEETTTCCCCEEECCCSSCEEEEEECTTSSEEEEEETTSCCCEE
T ss_pred             EEEcCCCCCeEEEEEcCCCC----EEEEEeCCCeEEEEECCCCCEEEEEeCCCCcEEEEeeecccccccccccccccccc
Confidence            45789999999999999764    79999999999999999999999999999999999999999999999999999999


Q ss_pred             ECCCCceeEEeeCCcccEEEEEECCCCCeEEEEecCCCeEEEEecCCcceeeeecCCCCCCCCCCccCCCCcceEEEEEC
Q 021247           88 DVDTNASIATLEASPSEVWQMQFDPKGTTLAVAGGGSASVKLWDTATWNLIATLSIPRPEGLKPTDKSSSKKFVLSVAWS  167 (315)
Q Consensus        88 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~  167 (315)
                      +.........+..+...+..+.++|+++.+ ++++.|+.+++||+++++.+..+..             +...+.+++|+
T Consensus        87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~d~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~~~  152 (317)
T d1vyhc1          87 DFQGFECIRTMHGHDHNVSSVSIMPNGDHI-VSASRDKTIKMWEVQTGYCVKTFTG-------------HREWVRMVRPN  152 (317)
T ss_dssp             ETTSSCEEECCCCCSSCEEEEEECSSSSEE-EEEETTSEEEEEETTTCCEEEEEEC-------------CSSCEEEEEEC
T ss_pred             cccccccccccccccccceeeeccCCCceE-EeeccCcceeEeecccceeeeEEcc-------------CCCcceeeecc
Confidence            999988888888888999999999998865 6778999999999998887766642             33458899999


Q ss_pred             CCCCEEEEecCCCcEEEEEcccceeeeeecCCccceEEEEEcCCC-------------------CcEEEEEeCCCeEEEE
Q 021247          168 PDGRRIACGSMDGTISVFDVTRAKFLHHLEGHFMPVRSLVYSPVD-------------------PRVLFSASDDTHVHMY  228 (315)
Q Consensus       168 ~~~~~l~~~s~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~-------------------~~~l~s~~~d~~i~~w  228 (315)
                      |++++|++++.|+.|++|++.+++....+..|...+..+.|+|..                   +.++++++.|+.|++|
T Consensus       153 ~~~~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~  232 (317)
T d1vyhc1         153 QDGTLIASCSNDQTVRVWVVATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMW  232 (317)
T ss_dssp             TTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEEEE
T ss_pred             cCCCEEEEEeCCCeEEEEeeccceeeEEEecCCCCceEEEEeeccccceeeccccceeeeeccCCceeEeccCCCEEEEE
Confidence            999999999999999999999999999999999999999998743                   2468899999999999


Q ss_pred             eCCCCeeEEEeecccccEEEEEEcCCCCeEEEEeCCCcEEEEecCccceehcccccccceEEEEEeeCCCEEEEEeCCCc
Q 021247          229 DAEGKSLVTAMSGHASWVLSVDASPDGAAITTGSSDRTVKLWDLNMRAAMQSMTNHTDQVWGVSFRPLGGRVVSVSDDKS  308 (315)
Q Consensus       229 d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~  308 (315)
                      |.++++.+..+.+|...|.+++++|++++|++|+.||.|++||+.+++.+.++.+|.+.|++++|+|++++|++++.||+
T Consensus       233 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~h~~~V~~~~~s~~~~~l~s~s~Dg~  312 (317)
T d1vyhc1         233 DVSTGMCLMTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLNAHEHFVTSLDFHKTAPYVVTGSVDQT  312 (317)
T ss_dssp             ETTTTEEEEEEECCSSCEEEEEECSSSSCEEEEETTTEEEEECCTTSCCCEEEECCSSCEEEEEECSSSSCEEEEETTSE
T ss_pred             ECCCCcEEEEEeCCCCCEEEEEECCCCCEEEEEECCCeEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCe
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEee
Q 021247          309 ISLYE  313 (315)
Q Consensus       309 i~i~~  313 (315)
                      |+|||
T Consensus       313 i~iWd  317 (317)
T d1vyhc1         313 VKVWE  317 (317)
T ss_dssp             EEEEC
T ss_pred             EEEeC
Confidence            99997

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.9e-46  Score=312.75  Aligned_cols=280  Identities=19%  Similarity=0.266  Sum_probs=242.4

Q ss_pred             ccccceEEEEEeecCCCCCcEEEEeeCCCcEEEEcCCCCcce-----eeccccccceEEEEeCCCCCEEEEeeCCCeEEE
Q 021247           12 AHEESVWAVTWVPATETRPALLLTGSLDETVKLWRPDDMQLE-----RTNTGHCLGVVSVAAHPSGIIAASASLDSFVRV   86 (315)
Q Consensus        12 ~h~~~v~~v~~~~~~~~~~~~l~sgs~d~~v~~w~~~~~~~~-----~~~~~h~~~v~~~~~~~~g~~l~s~~~d~~i~~   86 (315)
                      .|++.|++|+|+|.++    +|+||+ ||.|++||+......     ....+|...|.+++|+|+|.+|++++.|++|++
T Consensus        49 ~H~~~V~~v~fs~~g~----~latg~-dg~V~iWd~~~~~~~~~~~~~~~~~h~~~I~~v~~s~dg~~l~s~~~dg~i~i  123 (337)
T d1gxra_          49 NHGEVVCAVTISNPTR----HVYTGG-KGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSI  123 (337)
T ss_dssp             CCSSCCCEEEECSSSS----EEEEEC-BSEEEEEETTSTTCCSCSEEEECSCTTSBEEEEEECTTSSEEEEEESSSEEEE
T ss_pred             CCCCcEEEEEECCCCC----EEEEEE-CCEEEEEEccCCcccceeEEeeecCCCCcEEEEEEcCCCCEEEEeeccccccc
Confidence            7999999999999775    799987 899999998654322     223578999999999999999999999999999


Q ss_pred             EECCCCc--eeEEeeCCcccEEEEEECCCCCeEEEEecCCCeEEEEecCCcceeeeecCCCCCCCCCCccCCCCcceEEE
Q 021247           87 FDVDTNA--SIATLEASPSEVWQMQFDPKGTTLAVAGGGSASVKLWDTATWNLIATLSIPRPEGLKPTDKSSSKKFVLSV  164 (315)
Q Consensus        87 w~~~~~~--~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~  164 (315)
                      ||+....  ....+..+...+..+.|+|++..+ ++++.++.+++||+.+.+......             .+...+.++
T Consensus       124 wd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l-~s~~~d~~i~~~~~~~~~~~~~~~-------------~~~~~v~~l  189 (337)
T d1gxra_         124 WDLAAPTPRIKAELTSSAPACYALAISPDSKVC-FSCCSDGNIAVWDLHNQTLVRQFQ-------------GHTDGASCI  189 (337)
T ss_dssp             EECCCC--EEEEEEECSSSCEEEEEECTTSSEE-EEEETTSCEEEEETTTTEEEEEEC-------------CCSSCEEEE
T ss_pred             ccccccccccccccccccccccccccccccccc-cccccccccccccccccccccccc-------------ccccccccc
Confidence            9987543  455677788899999999998754 677899999999999877665443             234458999


Q ss_pred             EECCCCCEEEEecCCCcEEEEEcccceeeeeecCCccceEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCeeEEEeecccc
Q 021247          165 AWSPDGRRIACGSMDGTISVFDVTRAKFLHHLEGHFMPVRSLVYSPVDPRVLFSASDDTHVHMYDAEGKSLVTAMSGHAS  244 (315)
Q Consensus       165 ~~~~~~~~l~~~s~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~  244 (315)
                      +|+++++.+++++.|+.+++||+++++.+.... |..+|.+++|+| +++++++++.|+.+++||.+..... ....|..
T Consensus       190 ~~s~~~~~~~~~~~d~~v~i~d~~~~~~~~~~~-~~~~i~~l~~~~-~~~~l~~~~~d~~i~i~d~~~~~~~-~~~~~~~  266 (337)
T d1gxra_         190 DISNDGTKLWTGGLDNTVRSWDLREGRQLQQHD-FTSQIFSLGYCP-TGEWLAVGMESSNVEVLHVNKPDKY-QLHLHES  266 (337)
T ss_dssp             EECTTSSEEEEEETTSEEEEEETTTTEEEEEEE-CSSCEEEEEECT-TSSEEEEEETTSCEEEEETTSSCEE-EECCCSS
T ss_pred             cccccccccccccccccccccccccceeecccc-cccceEEEEEcc-cccccceeccccccccccccccccc-ccccccc
Confidence            999999999999999999999999988776654 778999999998 6778999999999999999887654 4567899


Q ss_pred             cEEEEEEcCCCCeEEEEeCCCcEEEEecCccceehcccccccceEEEEEeeCCCEEEEEeCCCcEEEeec
Q 021247          245 WVLSVDASPDGAAITTGSSDRTVKLWDLNMRAAMQSMTNHTDQVWGVSFRPLGGRVVSVSDDKSISLYEY  314 (315)
Q Consensus       245 ~i~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~i~i~~~  314 (315)
                      .|.+++|+|++++|++++.|+.|++||+..++.+..+ .|...|++++|+|++++|++++.||+|+|||+
T Consensus       267 ~i~~v~~s~~g~~l~s~s~Dg~i~iwd~~~~~~~~~~-~~~~~v~~~~~s~d~~~l~t~s~D~~I~vWdl  335 (337)
T d1gxra_         267 CVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQS-KESSSVLSCDISVDDKYIVTGSGDKKATVYEV  335 (337)
T ss_dssp             CEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEE-ECSSCEEEEEECTTSCEEEEEETTSCEEEEEE
T ss_pred             ccceEEECCCCCEEEEEeCCCeEEEEECCCCCEEEEc-cCCCCEEEEEEeCCCCEEEEEeCCCeEEEEEE
Confidence            9999999999999999999999999999998888765 57789999999999999999999999999996

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=1e-44  Score=308.35  Aligned_cols=282  Identities=29%  Similarity=0.468  Sum_probs=238.2

Q ss_pred             ccccceEEEEEeecCCCCCcEEEEeeCCCcEEEEcCCCCcceeec------------------cccccceEEEEeCCCCC
Q 021247           12 AHEESVWAVTWVPATETRPALLLTGSLDETVKLWRPDDMQLERTN------------------TGHCLGVVSVAAHPSGI   73 (315)
Q Consensus        12 ~h~~~v~~v~~~~~~~~~~~~l~sgs~d~~v~~w~~~~~~~~~~~------------------~~h~~~v~~~~~~~~g~   73 (315)
                      +|++.|+||+|+|++.    +|++|+ |++|++|+..+.+....+                  .+|...|.+++|+|+|+
T Consensus        60 ~H~~~V~~l~fs~dg~----~lasg~-d~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~~~  134 (388)
T d1erja_          60 DHTSVVCCVKFSNDGE----YLATGC-NKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGK  134 (388)
T ss_dssp             ECSSCCCEEEECTTSS----EEEEEC-BSCEEEEETTTCCEEEEECC-----------------CCCCBEEEEEECTTSS
T ss_pred             CCCCcEEEEEECCCCC----EEEEEe-CCeEEEEEecccceEeeecccccccccccccccccccCCCCCEEEEEECCCCC
Confidence            6999999999999765    788886 999999998876654433                  34667799999999999


Q ss_pred             EEEEeeCCCeEEEEECCCCceeEEeeCCcccEEEEEECCCCCeEEEEecCCCeEEEEecCCcceeeeecCCCCCCCCCCc
Q 021247           74 IAASASLDSFVRVFDVDTNASIATLEASPSEVWQMQFDPKGTTLAVAGGGSASVKLWDTATWNLIATLSIPRPEGLKPTD  153 (315)
Q Consensus        74 ~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~  153 (315)
                      +|++|+.|+.|++|+...++.+.....|...|..+.+++++..+ ++++.++.+++||.++..........         
T Consensus       135 ~l~s~~~dg~v~i~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~-~~~~~~~~i~~~d~~~~~~~~~~~~~---------  204 (388)
T d1erja_         135 FLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKL-VSGSGDRTVRIWDLRTGQCSLTLSIE---------  204 (388)
T ss_dssp             EEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEE-EEEETTSEEEEEETTTTEEEEEEECS---------
T ss_pred             cceecccccccccccccccccccccccccccccccccccccccc-cccccceeeeeeeccccccccccccc---------
Confidence            99999999999999999999999999999999999999988765 56788999999999886665544321         


Q ss_pred             cCCCCcceEEEEECC-CCCEEEEecCCCcEEEEEcccceeeeee-------cCCccceEEEEEcCCCCcEEEEEeCCCeE
Q 021247          154 KSSSKKFVLSVAWSP-DGRRIACGSMDGTISVFDVTRAKFLHHL-------EGHFMPVRSLVYSPVDPRVLFSASDDTHV  225 (315)
Q Consensus       154 ~~~~~~~i~~~~~~~-~~~~l~~~s~dg~i~i~d~~~~~~~~~~-------~~~~~~v~~~~~~~~~~~~l~s~~~d~~i  225 (315)
                           ....++.+++ ++++|++++.|+.|++||+.++.....+       .+|..+|.++.|+| ++++|++++.|+.|
T Consensus       205 -----~~~~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~-~~~~l~s~~~d~~i  278 (388)
T d1erja_         205 -----DGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTR-DGQSVVSGSLDRSV  278 (388)
T ss_dssp             -----SCEEEEEECSTTCCEEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECT-TSSEEEEEETTSEE
T ss_pred             -----cccccccccCCCCCeEEEEcCCCeEEEeecccCccceeeccccccccCCCCCEEEEEECC-CCCEEEEEECCCcE
Confidence                 1244555554 7889999999999999999887765543       36888999999998 67899999999999


Q ss_pred             EEEeCCCCe------------eEEEeecccccEEEEEEcCCCCeEEEEeCCCcEEEEecCccceehcccccccceEEEEE
Q 021247          226 HMYDAEGKS------------LVTAMSGHASWVLSVDASPDGAAITTGSSDRTVKLWDLNMRAAMQSMTNHTDQVWGVSF  293 (315)
Q Consensus       226 ~~wd~~~~~------------~~~~~~~~~~~i~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~  293 (315)
                      ++||++...            .......|...|.+++|+|++++|++|+.||.|++||+++++++.++.+|.+.|+++++
T Consensus       279 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~sg~~dg~i~vwd~~~~~~~~~l~~H~~~V~~~~~  358 (388)
T d1erja_         279 KLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQGHRNSVISVAV  358 (388)
T ss_dssp             EEEEC---------------CEEEEEECCSSCEEEEEECGGGCEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEE
T ss_pred             EEEeccCCccccccccccccceeeecccccceEEEEEECCCCCEEEEEeCCCEEEEEECCCCcEEEEEeCCCCCEEEEEE
Confidence            999986542            23345678899999999999999999999999999999999999999999999999874


Q ss_pred             ------eeCCCEEEEEeCCCcEEEeec
Q 021247          294 ------RPLGGRVVSVSDDKSISLYEY  314 (315)
Q Consensus       294 ------s~~~~~l~s~~~d~~i~i~~~  314 (315)
                            +|++.+|++++.||+|+||++
T Consensus       359 ~~~~~~spd~~~l~s~s~Dg~I~iW~~  385 (388)
T d1erja_         359 ANGSSLGPEYNVFATGSGDCKARIWKY  385 (388)
T ss_dssp             CSSCTTCTTCEEEEEEETTSEEEEEEE
T ss_pred             ecCcccCCCCCEEEEEeCCCEEEEEee
Confidence                  678999999999999999997

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=100.00  E-value=1.1e-44  Score=299.65  Aligned_cols=285  Identities=20%  Similarity=0.275  Sum_probs=239.6

Q ss_pred             ccccceEEEEEeecCCCCCcEEEEeeCCCcEEEEcCCCCcceeeccccccceEEEEeCCCCCEEEEeeCCCeEEEEECCC
Q 021247           12 AHEESVWAVTWVPATETRPALLLTGSLDETVKLWRPDDMQLERTNTGHCLGVVSVAAHPSGIIAASASLDSFVRVFDVDT   91 (315)
Q Consensus        12 ~h~~~v~~v~~~~~~~~~~~~l~sgs~d~~v~~w~~~~~~~~~~~~~h~~~v~~~~~~~~g~~l~s~~~d~~i~~w~~~~   91 (315)
                      .+...+..++++|.+.    .|+.++ ++.|.+|+.++....+.+.+|...|++++|+|+|++|++|+.|++|++||+.+
T Consensus        15 ~~r~~~~~~a~~~~g~----~l~~~~-~~~v~i~~~~~~~~~~~~~~H~~~v~~~~~sp~g~~latg~~dg~i~iwd~~~   89 (311)
T d1nr0a1          15 TARGTAVVLGNTPAGD----KIQYCN-GTSVYTVPVGSLTDTEIYTEHSHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQ   89 (311)
T ss_dssp             CCTTCCCCCEECTTSS----EEEEEE-TTEEEEEETTCSSCCEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEESSS
T ss_pred             CCCCCeEEEEEcCCCC----EEEEEe-CCEEEEEECCCCceeEEEcCCCCCEEEEEEeCCCCeEeccccCceEeeeeeec
Confidence            4455667788888775    466654 67899999999888888899999999999999999999999999999999998


Q ss_pred             Ccee--EEeeCCcccEEEEEECCCCCeEEEEec-CCCeEEEEecCCcceeeeecCCCCCCCCCCccCCCCcceEEEEECC
Q 021247           92 NASI--ATLEASPSEVWQMQFDPKGTTLAVAGG-GSASVKLWDTATWNLIATLSIPRPEGLKPTDKSSSKKFVLSVAWSP  168 (315)
Q Consensus        92 ~~~~--~~~~~~~~~v~~~~~~~~~~~~~~~~~-~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~  168 (315)
                      +...  ..+..|..+|.+++|+|+++.+++++. .+..+++|+..+++....+             ..|...|.+++|+|
T Consensus        90 ~~~~~~~~~~~~~~~v~~v~~s~d~~~l~~~~~~~~~~~~v~~~~~~~~~~~l-------------~~h~~~v~~v~~~~  156 (311)
T d1nr0a1          90 TTHILKTTIPVFSGPVKDISWDSESKRIAAVGEGRERFGHVFLFDTGTSNGNL-------------TGQARAMNSVDFKP  156 (311)
T ss_dssp             TTCCEEEEEECSSSCEEEEEECTTSCEEEEEECCSSCSEEEEETTTCCBCBCC-------------CCCSSCEEEEEECS
T ss_pred             cccccccccccccCccccccccccccccccccccccccccccccccccccccc-------------cccccccccccccc
Confidence            7653  457778899999999999987765543 3567999999876654433             23455699999999


Q ss_pred             CCCE-EEEecCCCcEEEEEcccceeeeeecCCccceEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCeeEEEee-------
Q 021247          169 DGRR-IACGSMDGTISVFDVTRAKFLHHLEGHFMPVRSLVYSPVDPRVLFSASDDTHVHMYDAEGKSLVTAMS-------  240 (315)
Q Consensus       169 ~~~~-l~~~s~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~-------  240 (315)
                      ++++ |++|+.|+.|++||+++++....+..|..+|.++.|+| +++++++++.|+.+++||.+.+..+..+.       
T Consensus       157 ~~~~~l~sgs~d~~i~i~d~~~~~~~~~~~~~~~~i~~v~~~p-~~~~l~~~~~d~~v~~~d~~~~~~~~~~~~~~~~~~  235 (311)
T d1nr0a1         157 SRPFRIISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNP-DGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNV  235 (311)
T ss_dssp             SSSCEEEEEETTSCEEEEETTTBEEEEEECCCSSCEEEEEECT-TSSEEEEEETTSCEEEEETTTCCEEEECBCTTSSSC
T ss_pred             cceeeecccccccccccccccccccccccccccccccccccCc-cccccccccccccccccccccccccccccccccccc
Confidence            9885 78899999999999999999999999999999999999 67899999999999999998877665543       


Q ss_pred             cccccEEEEEEcCCCCeEEEEeCCCcEEEEecCccceehccccccc-ceEEEEEeeCCCEEEEEeCCCcEEEeecC
Q 021247          241 GHASWVLSVDASPDGAAITTGSSDRTVKLWDLNMRAAMQSMTNHTD-QVWGVSFRPLGGRVVSVSDDKSISLYEYS  315 (315)
Q Consensus       241 ~~~~~i~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~-~v~~~~~s~~~~~l~s~~~d~~i~i~~~~  315 (315)
                      +|...|.+++|+|++++|++|+.||+|+|||+++++.++++..|.. ....+.+.+++.+|++++.||.|++||++
T Consensus       236 ~h~~~V~~~~~s~~~~~l~tgs~Dg~v~iwd~~t~~~~~~l~~~~~~~~~~~~~~~~~~~l~s~s~dG~i~~wd~d  311 (311)
T d1nr0a1         236 AHSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQALVSISANGFINFVNPE  311 (311)
T ss_dssp             SSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSGGGCEEEEEECSSCEEEEETTCCEEEEETT
T ss_pred             cccccccccccCCCCCEEEEEeCCCeEEEEECCCCcEEEEEECCCCccceEEEEEecCCEEEEEECCCEEEEEeCC
Confidence            5889999999999999999999999999999999998888876643 22234455556789999999999999975

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=6.1e-44  Score=297.40  Aligned_cols=289  Identities=19%  Similarity=0.310  Sum_probs=246.6

Q ss_pred             chhhhhhccccceEEEEEeecCCCCCcEEEEeeCCCcEEEEcCCCCcceeeccccccceEEEEeCCCCCEEEEeeCCCeE
Q 021247            5 GLKSVENAHEESVWAVTWVPATETRPALLLTGSLDETVKLWRPDDMQLERTNTGHCLGVVSVAAHPSGIIAASASLDSFV   84 (315)
Q Consensus         5 ~~~~~~~~h~~~v~~v~~~~~~~~~~~~l~sgs~d~~v~~w~~~~~~~~~~~~~h~~~v~~~~~~~~g~~l~s~~~d~~i   84 (315)
                      +...++.||+++|++++|+|.++    +|+||+.||+|++||..+.+....+.+|..+|.+++|+|++.++++++.|+.+
T Consensus        46 ~~~~tL~GH~~~I~~l~~s~~~~----~l~sgs~Dg~v~iWd~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~d~~i  121 (340)
T d1tbga_          46 RTRRTLRGHLAKIYAMHWGTDSR----LLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNIC  121 (340)
T ss_dssp             CEEEEECCCSSCEEEEEECTTSS----EEEEEETTTEEEEEETTTTEEEEEEECSCSCEEEEEECTTSSEEEEEETTCCE
T ss_pred             eeeEEECCCCCCEEEEEECCCCC----EEEEEECCCceeeeecccceeEEEEecccccEEeeEeeccceeeeeeccccee
Confidence            34456789999999999999765    79999999999999999998888899999999999999999999999999999


Q ss_pred             EEEECCCCc----eeEEeeCCcccEEEEEECCCCCeEEEEecCCCeEEEEecCCcceeeeecCCCCCCCCCCccCCCCcc
Q 021247           85 RVFDVDTNA----SIATLEASPSEVWQMQFDPKGTTLAVAGGGSASVKLWDTATWNLIATLSIPRPEGLKPTDKSSSKKF  160 (315)
Q Consensus        85 ~~w~~~~~~----~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  160 (315)
                      ++|+.....    ....+..+..........+. . .+.....+.....++............             ....
T Consensus       122 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~  186 (340)
T d1tbga_         122 SIYNLKTREGNVRVSRELAGHTGYLSCCRFLDD-N-QIVTSSGDTTCALWDIETGQQTTTFTG-------------HTGD  186 (340)
T ss_dssp             EEEESSSSCSCCCEEEEECCCSSCEEEEEEEET-T-EEEEEETTTEEEEEETTTTEEEEEEEC-------------CSSC
T ss_pred             ecccccccccccccceecccccccccccccccc-c-ccccccccccccccccccccccccccc-------------ccee
Confidence            999987643    33455555555555544443 3 334566788888888765444333221             2234


Q ss_pred             eEEEEECCCCCEEEEecCCCcEEEEEcccceeeeeecCCccceEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCeeEEEe-
Q 021247          161 VLSVAWSPDGRRIACGSMDGTISVFDVTRAKFLHHLEGHFMPVRSLVYSPVDPRVLFSASDDTHVHMYDAEGKSLVTAM-  239 (315)
Q Consensus       161 i~~~~~~~~~~~l~~~s~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~-  239 (315)
                      +....+.+.+.++++++.|+.|++||+++++.+..+.+|..+|++++|+| ++++|++++.|+.|++||.+....+..+ 
T Consensus       187 ~~~~~~~~~~~~~~~~~~d~~v~i~d~~~~~~~~~~~~h~~~i~~v~~~p-~~~~l~s~s~d~~i~~~~~~~~~~~~~~~  265 (340)
T d1tbga_         187 VMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFP-NGNAFATGSDDATCRLFDLRADQELMTYS  265 (340)
T ss_dssp             EEEEEECTTSSEEEEEETTTEEEEEETTTTEEEEEECCCSSCEEEEEECT-TSSEEEEEETTSCEEEEETTTTEEEEEEC
T ss_pred             EeeeccccccceeEEeecCceEEEEECCCCcEEEEEeCCCCCeEEEEECC-CCCEEEEEeCCCeEEEEeecccccccccc
Confidence            77889999999999999999999999999999999999999999999998 6789999999999999999988776654 


Q ss_pred             -ecccccEEEEEEcCCCCeEEEEeCCCcEEEEecCccceehcccccccceEEEEEeeCCCEEEEEeCCCcEEEee
Q 021247          240 -SGHASWVLSVDASPDGAAITTGSSDRTVKLWDLNMRAAMQSMTNHTDQVWGVSFRPLGGRVVSVSDDKSISLYE  313 (315)
Q Consensus       240 -~~~~~~i~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~i~i~~  313 (315)
                       ..+...|.+++|+|++++|++|+.||.|++||+.+++.+.++.+|.++|++++|+|++.+|+++|.||+|+|||
T Consensus       266 ~~~~~~~i~~~~~s~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~H~~~V~~l~~s~d~~~l~s~s~Dg~v~iWd  340 (340)
T d1tbga_         266 HDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN  340 (340)
T ss_dssp             CTTCCSCEEEEEECSSSCEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSCEEEEETTSCEEEEC
T ss_pred             cccccCceEEEEECCCCCEEEEEECCCEEEEEECCCCcEEEEEcCCCCCEEEEEEeCCCCEEEEEccCCEEEEeC
Confidence             35667799999999999999999999999999999999999999999999999999999999999999999997

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=1.9e-42  Score=293.16  Aligned_cols=285  Identities=16%  Similarity=0.181  Sum_probs=230.0

Q ss_pred             ccceEEEEEeecCCCCCcEEEEeeCCCcEEEEcCCCCc--ceeeccccccceEEEEeCCCCCEEEEeeCCCeEEEEECCC
Q 021247           14 EESVWAVTWVPATETRPALLLTGSLDETVKLWRPDDMQ--LERTNTGHCLGVVSVAAHPSGIIAASASLDSFVRVFDVDT   91 (315)
Q Consensus        14 ~~~v~~v~~~~~~~~~~~~l~sgs~d~~v~~w~~~~~~--~~~~~~~h~~~v~~~~~~~~g~~l~s~~~d~~i~~w~~~~   91 (315)
                      -++|+|++|+|++.    +||+|+.|+.|++|+.++.+  ....+.+|..+|.+++|+|++++|++++.|++|++||+.+
T Consensus         7 ~~pIt~~~~s~dg~----~la~~~~~~~i~iw~~~~~~~~~~~~l~gH~~~V~~l~fsp~~~~l~s~s~D~~i~vWd~~~   82 (371)
T d1k8kc_           7 VEPISCHAWNKDRT----QIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKG   82 (371)
T ss_dssp             SSCCCEEEECTTSS----EEEEECSSSEEEEEEEETTEEEEEEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEEEET
T ss_pred             CCCeEEEEECCCCC----EEEEEeCCCEEEEEECCCCCEEEEEEecCCCCCEEEEEECCCCCEEEEEECCCeEEEEeecc
Confidence            47899999999875    79999999999999987654  4556789999999999999999999999999999999987


Q ss_pred             Ccee--EEeeCCcccEEEEEECCCCCeEEEEecCCCeEEEEecCCcceeeeecCCCCCCCCCCccCCCCcceEEEEECCC
Q 021247           92 NASI--ATLEASPSEVWQMQFDPKGTTLAVAGGGSASVKLWDTATWNLIATLSIPRPEGLKPTDKSSSKKFVLSVAWSPD  169 (315)
Q Consensus        92 ~~~~--~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~  169 (315)
                      +...  ..+..+...|.+++|+|+++.+ ++++.|+++++|+....+.......         ....+...|.+++|+|+
T Consensus        83 ~~~~~~~~~~~~~~~v~~i~~~p~~~~l-~~~s~d~~i~i~~~~~~~~~~~~~~---------~~~~~~~~v~~v~~~p~  152 (371)
T d1k8kc_          83 RTWKPTLVILRINRAARCVRWAPNEKKF-AVGSGSRVISICYFEQENDWWVCKH---------IKKPIRSTVLSLDWHPN  152 (371)
T ss_dssp             TEEEEEEECCCCSSCEEEEEECTTSSEE-EEEETTSSEEEEEEETTTTEEEEEE---------ECTTCCSCEEEEEECTT
T ss_pred             cccccccccccccccccccccccccccc-eeecccCcceeeeeecccccccccc---------ccccccccccccccccc
Confidence            7643  3445677889999999998865 6778899999999876543322211         11234566999999999


Q ss_pred             CCEEEEecCCCcEEEEEcccc------------------eeeeeecCCccceEEEEEcCCCCcEEEEEeCCCeEEEEeCC
Q 021247          170 GRRIACGSMDGTISVFDVTRA------------------KFLHHLEGHFMPVRSLVYSPVDPRVLFSASDDTHVHMYDAE  231 (315)
Q Consensus       170 ~~~l~~~s~dg~i~i~d~~~~------------------~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~  231 (315)
                      +++|++|+.|+.+++||+...                  +.......|...|.+++|+| +++++++++.|+.|++||.+
T Consensus       153 ~~~l~s~s~D~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~-~g~~l~s~~~d~~i~iwd~~  231 (371)
T d1k8kc_         153 SVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSA-NGSRVAWVSHDSTVCLADAD  231 (371)
T ss_dssp             SSEEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECS-SSSEEEEEETTTEEEEEEGG
T ss_pred             ccceeccccCcEEEEEeeccCccccccccccccccccceeeeeeccCccCcEEEEEeec-ccccccccccCCcceEEeee
Confidence            999999999999999997532                  23445567888999999999 56789999999999999999


Q ss_pred             CCeeEEEeecccccEEEEEEcCCCCeEEEEeCCCcEEEEecCcc--cee--h--------------------c-------
Q 021247          232 GKSLVTAMSGHASWVLSVDASPDGAAITTGSSDRTVKLWDLNMR--AAM--Q--------------------S-------  280 (315)
Q Consensus       232 ~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~d~~i~iwd~~~~--~~~--~--------------------~-------  280 (315)
                      .+..+..+..|..+|.+++|+|++++|++| .|+.+++|.....  ...  .                    .       
T Consensus       232 ~~~~~~~~~~~~~~v~s~~fs~d~~~la~g-~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  310 (371)
T d1k8kc_         232 KKMAVATLASETLPLLAVTFITESSLVAAG-HDCFPVLFTYDSAAGKLSFGGRLDVPKQSSQRGLTARERFQNLDKKASS  310 (371)
T ss_dssp             GTTEEEEEECSSCCEEEEEEEETTEEEEEE-TTSSCEEEEEETTTTEEEECCCCCCC--------CHHHHHHHCCCCC--
T ss_pred             cccceeeeecccccceeeeecCCCCEEEEE-cCCceEEEEeeCCCceEEEeeeecCccccccccccceeeEecccceeEE
Confidence            998999999999999999999999877754 5787777654321  100  0                    0       


Q ss_pred             ----------ccccccceEEEEEeeCC----CEEEEEeCCCcEEEeec
Q 021247          281 ----------MTNHTDQVWGVSFRPLG----GRVVSVSDDKSISLYEY  314 (315)
Q Consensus       281 ----------~~~~~~~v~~~~~s~~~----~~l~s~~~d~~i~i~~~  314 (315)
                                ...|...|+++++.|.+    ..|+|+|.||+|+|||+
T Consensus       311 ~~~~~~~~~~~~~H~~~I~~i~~~~~~~~~~~~~~T~g~Dg~v~iW~~  358 (371)
T d1k8kc_         311 EGSAAAGAGLDSLHKNSVSQISVLSGGKAKCSQFCTTGMDGGMSIWDV  358 (371)
T ss_dssp             -------CCCSSSSSSCEEEEEEEESTTTSCSEEEEEETTSEEEEEEH
T ss_pred             eccccccceecccccCCEEEEEEeCCCCcceEEEEEEcCCCeEEEEeC
Confidence                      01377889999998864    35899999999999997

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=100.00  E-value=2.8e-42  Score=283.27  Aligned_cols=284  Identities=17%  Similarity=0.233  Sum_probs=224.9

Q ss_pred             hhhhhhccccceEEEEEeecCCCCCcEEEEeeCCCcEEEEcCCCCcceeec-cccccceEEEEeCCCCCEEEEeeCCCeE
Q 021247            6 LKSVENAHEESVWAVTWVPATETRPALLLTGSLDETVKLWRPDDMQLERTN-TGHCLGVVSVAAHPSGIIAASASLDSFV   84 (315)
Q Consensus         6 ~~~~~~~h~~~v~~v~~~~~~~~~~~~l~sgs~d~~v~~w~~~~~~~~~~~-~~h~~~v~~~~~~~~g~~l~s~~~d~~i   84 (315)
                      +..++.||++.|++++|+|++.    +|+||+.||+|++||.++++..+.+ .+|...|.++.|+|+|.+ ++++.|+.+
T Consensus         4 ~~~~~~GH~~~V~~l~~s~dg~----~l~s~s~Dg~v~vWd~~~~~~~~~~~~~h~~~v~~v~~~~~g~~-~~~~~d~~v   78 (299)
T d1nr0a2           4 IDQVRYGHNKAITALSSSADGK----TLFSADAEGHINSWDISTGISNRVFPDVHATMITGIKTTSKGDL-FTVSWDDHL   78 (299)
T ss_dssp             EEEEECCCSSCEEEEEECTTSS----EEEEEETTSCEEEEETTTCCEEECSSCSCSSCEEEEEECTTSCE-EEEETTTEE
T ss_pred             cceEcCCCCCCcEEEEECCCCC----EEEEEcCCCeEEEEECCCCcEEEEEcCCCCCcEEEEEeecccee-ecccceeeE
Confidence            3467789999999999999765    7999999999999999988877766 478999999999999975 456779999


Q ss_pred             EEEECCCCce---eEEeeCCcccEEEEEECCCCCeEEEEecCCCeEEEEecCCcceeeeecCCCCCCCCCCccCCCCcce
Q 021247           85 RVFDVDTNAS---IATLEASPSEVWQMQFDPKGTTLAVAGGGSASVKLWDTATWNLIATLSIPRPEGLKPTDKSSSKKFV  161 (315)
Q Consensus        85 ~~w~~~~~~~---~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i  161 (315)
                      ++|+......   ......+...+..++++|++..++.  +.++.+.+|+.....   ...              ....+
T Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~--~~~~~i~~~~~~~~~---~~~--------------~~~~~  139 (299)
T d1nr0a2          79 KVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVA--ACYKHIAIYSHGKLT---EVP--------------ISYNS  139 (299)
T ss_dssp             EEECSSSSSSCTTSCCEEECSSCEEEEEECTTSSCEEE--EESSEEEEEETTEEE---EEE--------------CSSCE
T ss_pred             EEeccCCccccccccccccccccccccccccccccccc--ccccccccccccccc---ccc--------------ccccc
Confidence            9999865432   1122335567889999999886543  346789999864321   111              11236


Q ss_pred             EEEEECCCCCEEEEecCCCcEEEEEcccceeee-eecCCccceEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCeeE---E
Q 021247          162 LSVAWSPDGRRIACGSMDGTISVFDVTRAKFLH-HLEGHFMPVRSLVYSPVDPRVLFSASDDTHVHMYDAEGKSLV---T  237 (315)
Q Consensus       162 ~~~~~~~~~~~l~~~s~dg~i~i~d~~~~~~~~-~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~---~  237 (315)
                      .+++|+|++++|++|+.|+.|++||+++++... ....|..+|.+++|+| ++.++++++.|+.|++||...+...   .
T Consensus       140 ~~~~~s~~~~~l~~g~~dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~d~~i~~~~~~~~~~~~~~~  218 (299)
T d1nr0a2         140 SCVALSNDKQFVAVGGQDSKVHVYKLSGASVSEVKTIVHPAEITSVAFSN-NGAFLVATDQSRKVIPYSVANNFELAHTN  218 (299)
T ss_dssp             EEEEECTTSCEEEEEETTSEEEEEEEETTEEEEEEEEECSSCEEEEEECT-TSSEEEEEETTSCEEEEEGGGTTEESCCC
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccccccccccccccccccccc
Confidence            789999999999999999999999998776543 3456888999999998 6788999999999999998765443   3


Q ss_pred             EeecccccEEEEEEcCCCCeEEEEeCCCcEEEEecCccceeh--cccc-cccceEEEEEeeCCCEEEEEeCCCcEEEeec
Q 021247          238 AMSGHASWVLSVDASPDGAAITTGSSDRTVKLWDLNMRAAMQ--SMTN-HTDQVWGVSFRPLGGRVVSVSDDKSISLYEY  314 (315)
Q Consensus       238 ~~~~~~~~i~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~--~~~~-~~~~v~~~~~s~~~~~l~s~~~d~~i~i~~~  314 (315)
                      .+.+|...|++++|+|++++|++|+.|+.|++||++.+....  .... +...+.++. ++++.+|++++.|++|+|||+
T Consensus       219 ~~~~h~~~v~~l~~s~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~-~~~~~~l~s~s~D~~i~iWdl  297 (299)
T d1nr0a2         219 SWTFHTAKVACVSWSPDNVRLATGSLDNSVIVWNMNKPSDHPIIIKGAHAMSSVNSVI-WLNETTIVSAGQDSNIKFWNV  297 (299)
T ss_dssp             CCCCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTCTTSCCEEETTSSTTSCEEEEE-EEETTEEEEEETTSCEEEEEC
T ss_pred             cccccccccccccccccccceEEEcCCCEEEEEECCCCCcceEEEecCCCCCcEEEEE-ECCCCEEEEEeCCCEEEEEec
Confidence            456789999999999999999999999999999998764322  2223 345566665 456789999999999999997


Q ss_pred             C
Q 021247          315 S  315 (315)
Q Consensus       315 ~  315 (315)
                      +
T Consensus       298 ~  298 (299)
T d1nr0a2         298 P  298 (299)
T ss_dssp             C
T ss_pred             c
Confidence            5

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=100.00  E-value=4.4e-40  Score=271.91  Aligned_cols=248  Identities=19%  Similarity=0.257  Sum_probs=211.3

Q ss_pred             hhhhhhccccceEEEEEeecCCCCCcEEEEeeCCCcEEEEcCCCCcc--eeeccccccceEEEEeCCCCCEEEEeeC--C
Q 021247            6 LKSVENAHEESVWAVTWVPATETRPALLLTGSLDETVKLWRPDDMQL--ERTNTGHCLGVVSVAAHPSGIIAASASL--D   81 (315)
Q Consensus         6 ~~~~~~~h~~~v~~v~~~~~~~~~~~~l~sgs~d~~v~~w~~~~~~~--~~~~~~h~~~v~~~~~~~~g~~l~s~~~--d   81 (315)
                      ...+..+|++.|++++|+|.++    +|++|+.||+|++|+..+.+.  ...+.+|..+|.+++|+|+++++++++.  +
T Consensus        50 ~~~~~~~H~~~v~~~~~sp~g~----~latg~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~d~~~l~~~~~~~~  125 (311)
T d1nr0a1          50 DTEIYTEHSHQTTVAKTSPSGY----YCASGDVHGNVRIWDTTQTTHILKTTIPVFSGPVKDISWDSESKRIAAVGEGRE  125 (311)
T ss_dssp             CCEEECCCSSCEEEEEECTTSS----EEEEEETTSEEEEEESSSTTCCEEEEEECSSSCEEEEEECTTSCEEEEEECCSS
T ss_pred             eeEEEcCCCCCEEEEEEeCCCC----eEeccccCceEeeeeeeccccccccccccccCcccccccccccccccccccccc
Confidence            3445579999999999999775    799999999999999877653  3456789999999999999999998875  4


Q ss_pred             CeEEEEECCCCceeEEeeCCcccEEEEEECCCCCeEEEEecCCCeEEEEecCCcceeeeecCCCCCCCCCCccCCCCcce
Q 021247           82 SFVRVFDVDTNASIATLEASPSEVWQMQFDPKGTTLAVAGGGSASVKLWDTATWNLIATLSIPRPEGLKPTDKSSSKKFV  161 (315)
Q Consensus        82 ~~i~~w~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i  161 (315)
                      +.+++|++++++....+..|...|.+++|+|++++++++|+.|+.|++||+++++....+.             .+...|
T Consensus       126 ~~~~v~~~~~~~~~~~l~~h~~~v~~v~~~~~~~~~l~sgs~d~~i~i~d~~~~~~~~~~~-------------~~~~~i  192 (311)
T d1nr0a1         126 RFGHVFLFDTGTSNGNLTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKFKSTFG-------------EHTKFV  192 (311)
T ss_dssp             CSEEEEETTTCCBCBCCCCCSSCEEEEEECSSSSCEEEEEETTSCEEEEETTTBEEEEEEC-------------CCSSCE
T ss_pred             ccccccccccccccccccccccccccccccccceeeecccccccccccccccccccccccc-------------cccccc
Confidence            6699999999988888888999999999999999888899999999999999887766553             234569


Q ss_pred             EEEEECCCCCEEEEecCCCcEEEEEcccceeeeee-------cCCccceEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCe
Q 021247          162 LSVAWSPDGRRIACGSMDGTISVFDVTRAKFLHHL-------EGHFMPVRSLVYSPVDPRVLFSASDDTHVHMYDAEGKS  234 (315)
Q Consensus       162 ~~~~~~~~~~~l~~~s~dg~i~i~d~~~~~~~~~~-------~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~  234 (315)
                      .++.|+|++++|++++.|+.+++||+.+++....+       .+|...|.+++|+| ++++|++|+.|+.|++||.++++
T Consensus       193 ~~v~~~p~~~~l~~~~~d~~v~~~d~~~~~~~~~~~~~~~~~~~h~~~V~~~~~s~-~~~~l~tgs~Dg~v~iwd~~t~~  271 (311)
T d1nr0a1         193 HSVRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSP-DGTKIASASADKTIKIWNVATLK  271 (311)
T ss_dssp             EEEEECTTSSEEEEEETTSCEEEEETTTCCEEEECBCTTSSSCSSSSCEEEEEECT-TSSEEEEEETTSEEEEEETTTTE
T ss_pred             cccccCccccccccccccccccccccccccccccccccccccccccccccccccCC-CCCEEEEEeCCCeEEEEECCCCc
Confidence            99999999999999999999999999887765544       35888999999998 67899999999999999999999


Q ss_pred             eEEEeeccc---ccEEEEEEcCCCCeEEEEeCCCcEEEEecC
Q 021247          235 LVTAMSGHA---SWVLSVDASPDGAAITTGSSDRTVKLWDLN  273 (315)
Q Consensus       235 ~~~~~~~~~---~~i~~~~~~~~~~~l~s~~~d~~i~iwd~~  273 (315)
                      ++..+..|.   ..+.++.+  +++.|++++.||.|++||.+
T Consensus       272 ~~~~l~~~~~~~~~~~~~~~--~~~~l~s~s~dG~i~~wd~d  311 (311)
T d1nr0a1         272 VEKTIPVGTRIEDQQLGIIW--TKQALVSISANGFINFVNPE  311 (311)
T ss_dssp             EEEEEECCSSGGGCEEEEEE--CSSCEEEEETTCCEEEEETT
T ss_pred             EEEEEECCCCccceEEEEEe--cCCEEEEEECCCEEEEEeCC
Confidence            988887654   23444444  55679999999999999974

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.8e-39  Score=268.67  Aligned_cols=295  Identities=24%  Similarity=0.334  Sum_probs=218.9

Q ss_pred             cchhhhhhccccceEEEEEeecCCCCCcEEEEeeCCCcEEEEcCCCCcceeeccccccceEEEEeCCCCCEEEEeeCCCe
Q 021247            4 AGLKSVENAHEESVWAVTWVPATETRPALLLTGSLDETVKLWRPDDMQLERTNTGHCLGVVSVAAHPSGIIAASASLDSF   83 (315)
Q Consensus         4 ~~~~~~~~~h~~~v~~v~~~~~~~~~~~~l~sgs~d~~v~~w~~~~~~~~~~~~~h~~~v~~~~~~~~g~~l~s~~~d~~   83 (315)
                      .+...+++||++.|.+ +++++++    +|+|||.||+|++||..+.++.+.+.+|..+|.+++++|+  ++++++.|++
T Consensus         6 ~~~~~~l~GH~~~V~s-~~~~~g~----~l~sgs~Dg~i~vWd~~~~~~~~~~~~h~~~V~~v~~~~~--~l~s~s~D~~   78 (342)
T d2ovrb2           6 LKSPKVLKGHDDHVIT-CLQFCGN----RIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQMRDN--IIISGSTDRT   78 (342)
T ss_dssp             CCCCEEEECSTTSCEE-EEEEETT----EEEEEETTSCEEEEETTTCCEEEECCCCSSCEEEEEEETT--EEEEEETTSC
T ss_pred             CCcCEEECCcCCceEE-EEEECCC----EEEEEeCCCeEEEEECCCCCEEEEEeCCCCCEEEEEeCCC--ccccceeccc
Confidence            3456678999999865 2445543    7999999999999999999999999999999999999874  9999999999


Q ss_pred             EEEEECCCCceeEEeeCCcccEEEEEECCCCCeEEEEecCCCeEEEEecCCcceeeeecCCCCC----------------
Q 021247           84 VRVFDVDTNASIATLEASPSEVWQMQFDPKGTTLAVAGGGSASVKLWDTATWNLIATLSIPRPE----------------  147 (315)
Q Consensus        84 i~~w~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~----------------  147 (315)
                      +++|+................+......+.   ....+..|+.+.+|+..+++....+......                
T Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  155 (342)
T d2ovrb2          79 LKVWNAETGECIHTLYGHTSTVRCMHLHEK---RVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQYDGRRVVSGAY  155 (342)
T ss_dssp             EEEEETTTTEEEEEECCCSSCEEEEEEETT---EEEEEETTSEEEEEESSSCCEEEEEECCSSCEEEEEECSSCEEEEET
T ss_pred             ccccccccccceecccccceeEeeeecccc---cccccccceeEEEeecccccceeeeecccccceeeccccceeeeecC
Confidence            999999887665554444444443333221   2223344445555554443322221110000                


Q ss_pred             -CC----------CCCccCCCCcceEEEEECCCCCEEEEecCCCcEEEEEcccceeeeeecCCccceEEEEEcCCCCcEE
Q 021247          148 -GL----------KPTDKSSSKKFVLSVAWSPDGRRIACGSMDGTISVFDVTRAKFLHHLEGHFMPVRSLVYSPVDPRVL  216 (315)
Q Consensus       148 -~~----------~~~~~~~~~~~i~~~~~~~~~~~l~~~s~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l  216 (315)
                       +.          .......+.  .....+.+++.++++++.||.|++||++.++.+..+.+|...+.++.+++   +++
T Consensus       156 d~~i~~~d~~~~~~~~~~~~~~--~~~~~~~~~~~~l~s~~~dg~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~---~~l  230 (342)
T d2ovrb2         156 DFMVKVWDPETETCLHTLQGHT--NRVYSLQFDGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGMELKD---NIL  230 (342)
T ss_dssp             TSCEEEEEGGGTEEEEEECCCS--SCEEEEEECSSEEEEEETTSCEEEEETTTCCEEEEECCCCSCEEEEEEET---TEE
T ss_pred             CCeEEEeecccceeeEEEcCcc--cccccccCCCCEEEEEeCCCeEEEeecccceeeeEecccccceeEEecCC---CEE
Confidence             00          000001112  22344556788999999999999999999999999999999999988864   589


Q ss_pred             EEEeCCCeEEEEeCCCCeeEEEeec---ccccEEEEEEcCCCCeEEEEeCCCcEEEEecCccceehcc-----cccccce
Q 021247          217 FSASDDTHVHMYDAEGKSLVTAMSG---HASWVLSVDASPDGAAITTGSSDRTVKLWDLNMRAAMQSM-----TNHTDQV  288 (315)
Q Consensus       217 ~s~~~d~~i~~wd~~~~~~~~~~~~---~~~~i~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~-----~~~~~~v  288 (315)
                      ++++.|+.|++||....+....+..   |...+.++.++  +.++++|+.||+|++||+++++.++++     .+|...|
T Consensus       231 ~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~s~s~Dg~i~iwd~~tg~~i~~~~~~~~~~~~~~v  308 (342)
T d2ovrb2         231 VSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFN--KNFVITSSDDGTVKLWDLKTGEFIRNLVTLESGGSGGVV  308 (342)
T ss_dssp             EEEETTSCEEEEETTTCCEEEEECSTTSCSSCEEEEEEC--SSEEEEEETTSEEEEEETTTCCEEEEEEECTTGGGTCEE
T ss_pred             EEEcCCCEEEEEecccccccccccccceeeeceeecccC--CCeeEEEcCCCEEEEEECCCCCEEEEEecccCCCCCCCE
Confidence            9999999999999988877666654   56677777665  468999999999999999998877655     3577889


Q ss_pred             EEEEEeeCCCEEEEEeCCCc----EEEeecC
Q 021247          289 WGVSFRPLGGRVVSVSDDKS----ISLYEYS  315 (315)
Q Consensus       289 ~~~~~s~~~~~l~s~~~d~~----i~i~~~~  315 (315)
                      ++++|+|++..|++|+.||+    |++|||+
T Consensus       309 ~~v~~s~~~~~la~g~~dGt~~~~l~~~Df~  339 (342)
T d2ovrb2         309 WRIRASNTKLVCAVGSRNGTEETKLLVLDFD  339 (342)
T ss_dssp             EEEEECSSEEEEEEECSSSSSCCEEEEEECC
T ss_pred             EEEEECCCCCEEEEEeCCCCCeeEEEEEeCC
Confidence            99999999999999999986    9999985

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=2.1e-39  Score=270.86  Aligned_cols=291  Identities=20%  Similarity=0.273  Sum_probs=221.7

Q ss_pred             hhhhccccce-EEEEEeecCCCCCcEEEEeeCCCcEEEEcCCCCcceeeccccccceEEEEeCCCCCEEEEeeCCCeEEE
Q 021247            8 SVENAHEESV-WAVTWVPATETRPALLLTGSLDETVKLWRPDDMQLERTNTGHCLGVVSVAAHPSGIIAASASLDSFVRV   86 (315)
Q Consensus         8 ~~~~~h~~~v-~~v~~~~~~~~~~~~l~sgs~d~~v~~w~~~~~~~~~~~~~h~~~v~~~~~~~~g~~l~s~~~d~~i~~   86 (315)
                      .++++|.+.| +|++|.  ++    +|+||+.||+|++||..+.++...+.+|..+|.+++|+|+ .+|++++.|++|++
T Consensus         6 ~tL~GH~~~vitc~~~~--~~----~l~tgs~Dg~i~vWd~~~~~~~~~l~~H~~~V~~l~~s~~-~~l~s~s~D~~i~i   78 (355)
T d1nexb2           6 TTLRGHMTSVITCLQFE--DN----YVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAHG-GILVSGSTDRTVRV   78 (355)
T ss_dssp             EEEECCSSSCEEEEEEE--TT----EEEEEETTTEEEEEETTTTEEEEEEECCSSCEEEEEEETT-TEEEEEETTCCEEE
T ss_pred             EEECCcCCCcEEEEEEC--CC----EEEEEeCCCeEEEEECCCCcEEEEEECCCCCEEEEEEcCC-CEEEEEeccccccc
Confidence            4578999986 666653  32    7999999999999999999999999999999999999985 58899999999999


Q ss_pred             EECCCCceeEEeeCCcc--cEEEEEECCCCCeEEEEecCCCeEEEEecCCcceeeeecCCC----------C--------
Q 021247           87 FDVDTNASIATLEASPS--EVWQMQFDPKGTTLAVAGGGSASVKLWDTATWNLIATLSIPR----------P--------  146 (315)
Q Consensus        87 w~~~~~~~~~~~~~~~~--~v~~~~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~----------~--------  146 (315)
                      |+...............  ......+.+++. .+++++.|+.|++||+++...........          .        
T Consensus        79 w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  157 (355)
T d1nexb2          79 WDIKKGCCTHVFEGHNSTVRCLDIVEYKNIK-YIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVL  157 (355)
T ss_dssp             EETTTTEEEEEECCCSSCEEEEEEEEETTEE-EEEEEETTSEEEEEECCC-----------CCCEEESCTTTCTTEEEEE
T ss_pred             ccccccccccccccccccccccccccccccc-eeeeecCCCcEEEEEccCCceeccccccceeccceeccccccceeeee
Confidence            99999887665544333  344555666655 45678899999999987643321110000          0        


Q ss_pred             --------------------------------CCCCCCccCCCCcceEEEEECCCCCEEEEecCCCcEEEEEcccceeee
Q 021247          147 --------------------------------EGLKPTDKSSSKKFVLSVAWSPDGRRIACGSMDGTISVFDVTRAKFLH  194 (315)
Q Consensus       147 --------------------------------~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~s~dg~i~i~d~~~~~~~~  194 (315)
                                                      ..........+...+.++.++|+++++++++.|+.|++||++++..+.
T Consensus       158 ~~~~~~v~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~  237 (355)
T d1nexb2         158 RGHMASVRTVSGHGNIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCISASMDTTIRIWDLENGELMY  237 (355)
T ss_dssp             ECCSSCEEEEEEETTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTCCEEE
T ss_pred             eeccccccccccccceeeeecccceeeeeecccccceeeeeccccccccccccccceeeecccccceEEeeecccccccc
Confidence                                            000000011234456789999999999999999999999999999999


Q ss_pred             eecCCccceEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCeeEEEeecccccEEEEE-EcCCCCeEEEEeCCCcEEEEecC
Q 021247          195 HLEGHFMPVRSLVYSPVDPRVLFSASDDTHVHMYDAEGKSLVTAMSGHASWVLSVD-ASPDGAAITTGSSDRTVKLWDLN  273 (315)
Q Consensus       195 ~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~i~~~~-~~~~~~~l~s~~~d~~i~iwd~~  273 (315)
                      .+.+|..+|.++.+++   ++|++++.|+.|++||.++....  +..|...+..+. ++++++++++| .|+.|++||++
T Consensus       238 ~~~~h~~~v~~~~~~~---~~l~~~~~dg~i~iwd~~~~~~~--~~~~~~~~~~~~~~~~~~~~l~~g-~d~~i~vwd~~  311 (355)
T d1nexb2         238 TLQGHTALVGLLRLSD---KFLVSAAADGSIRGWDANDYSRK--FSYHHTNLSAITTFYVSDNILVSG-SENQFNIYNLR  311 (355)
T ss_dssp             EECCCSSCCCEEEECS---SEEEEECTTSEEEEEETTTCCEE--EEEECTTCCCCCEEEECSSEEEEE-ETTEEEEEETT
T ss_pred             cccccccccccccccc---ceeeeeeccccccccccccccee--cccccCCceEEEEEcCCCCEEEEE-eCCEEEEEECC
Confidence            9999999999999874   58999999999999999876543  344555555554 56677766655 58999999999


Q ss_pred             ccceeh-cccccccceEEEEEeeCCCEEEEEeCCCcEEEee
Q 021247          274 MRAAMQ-SMTNHTDQVWGVSFRPLGGRVVSVSDDKSISLYE  313 (315)
Q Consensus       274 ~~~~~~-~~~~~~~~v~~~~~s~~~~~l~s~~~d~~i~i~~  313 (315)
                      +++.+. .+.+|.+.|++++|+|+ ..+++++.||++.||.
T Consensus       312 tg~~~~~~~~~~~~~V~~v~~~~~-~~~~~~s~dg~~~l~~  351 (355)
T d1nexb2         312 SGKLVHANILKDADQIWSVNFKGK-TLVAAVEKDGQSFLEI  351 (355)
T ss_dssp             TCCBCCSCTTTTCSEEEEEEEETT-EEEEEEESSSCEEEEE
T ss_pred             CCCEEEEEecCCCCCEEEEEEcCC-eEEEEEECCCcEEEEE
Confidence            998875 46789999999999986 4778899999865543

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=9.1e-38  Score=260.84  Aligned_cols=240  Identities=19%  Similarity=0.303  Sum_probs=212.3

Q ss_pred             hccccceEEEEEeecCCCCCcEEEEeeCCCcEEEEcCCCC--cceeeccccccceEEEEeCCCCCEEEEeeCCCeEEEEE
Q 021247           11 NAHEESVWAVTWVPATETRPALLLTGSLDETVKLWRPDDM--QLERTNTGHCLGVVSVAAHPSGIIAASASLDSFVRVFD   88 (315)
Q Consensus        11 ~~h~~~v~~v~~~~~~~~~~~~l~sgs~d~~v~~w~~~~~--~~~~~~~~h~~~v~~~~~~~~g~~l~s~~~d~~i~~w~   88 (315)
                      .+|++.|.+++|+|+++    +|++|+.||.|++|+....  +....+.+|...+..+.++|++.++++++.|+.|++|+
T Consensus        94 ~~h~~~I~~v~~s~dg~----~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~~~~  169 (337)
T d1gxra_          94 LNRDNYIRSCKLLPDGC----TLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDSKVCFSCCSDGNIAVWD  169 (337)
T ss_dssp             SCTTSBEEEEEECTTSS----EEEEEESSSEEEEEECCCC--EEEEEEECSSSCEEEEEECTTSSEEEEEETTSCEEEEE
T ss_pred             cCCCCcEEEEEEcCCCC----EEEEeeccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            57999999999999765    7999999999999997644  34556678999999999999999999999999999999


Q ss_pred             CCCCceeEEeeCCcccEEEEEECCCCCeEEEEecCCCeEEEEecCCcceeeeecCCCCCCCCCCccCCCCcceEEEEECC
Q 021247           89 VDTNASIATLEASPSEVWQMQFDPKGTTLAVAGGGSASVKLWDTATWNLIATLSIPRPEGLKPTDKSSSKKFVLSVAWSP  168 (315)
Q Consensus        89 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~  168 (315)
                      +.+++.......+...+.+++|++++..+ ++++.|+.+++||+++++.+..+..              ...|.+++|+|
T Consensus       170 ~~~~~~~~~~~~~~~~v~~l~~s~~~~~~-~~~~~d~~v~i~d~~~~~~~~~~~~--------------~~~i~~l~~~~  234 (337)
T d1gxra_         170 LHNQTLVRQFQGHTDGASCIDISNDGTKL-WTGGLDNTVRSWDLREGRQLQQHDF--------------TSQIFSLGYCP  234 (337)
T ss_dssp             TTTTEEEEEECCCSSCEEEEEECTTSSEE-EEEETTSEEEEEETTTTEEEEEEEC--------------SSCEEEEEECT
T ss_pred             ccccccccccccccccccccccccccccc-ccccccccccccccccceeeccccc--------------ccceEEEEEcc
Confidence            99999888888889999999999998865 5678899999999998887765532              33489999999


Q ss_pred             CCCEEEEecCCCcEEEEEcccceeeeeecCCccceEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCeeEEEeecccccEEE
Q 021247          169 DGRRIACGSMDGTISVFDVTRAKFLHHLEGHFMPVRSLVYSPVDPRVLFSASDDTHVHMYDAEGKSLVTAMSGHASWVLS  248 (315)
Q Consensus       169 ~~~~l~~~s~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~i~~  248 (315)
                      ++++|++++.|+.+++||+++++.. ....|...|.+++|+| ++++|++++.|+.|++||...++.+... .|...|.+
T Consensus       235 ~~~~l~~~~~d~~i~i~d~~~~~~~-~~~~~~~~i~~v~~s~-~g~~l~s~s~Dg~i~iwd~~~~~~~~~~-~~~~~v~~  311 (337)
T d1gxra_         235 TGEWLAVGMESSNVEVLHVNKPDKY-QLHLHESCVLSLKFAY-CGKWFVSTGKDNLLNAWRTPYGASIFQS-KESSSVLS  311 (337)
T ss_dssp             TSSEEEEEETTSCEEEEETTSSCEE-EECCCSSCEEEEEECT-TSSEEEEEETTSEEEEEETTTCCEEEEE-ECSSCEEE
T ss_pred             cccccceeccccccccccccccccc-cccccccccceEEECC-CCCEEEEEeCCCeEEEEECCCCCEEEEc-cCCCCEEE
Confidence            9999999999999999999877754 4567889999999998 6679999999999999999988877664 47889999


Q ss_pred             EEEcCCCCeEEEEeCCCcEEEEec
Q 021247          249 VDASPDGAAITTGSSDRTVKLWDL  272 (315)
Q Consensus       249 ~~~~~~~~~l~s~~~d~~i~iwd~  272 (315)
                      ++|+|++++|++|+.|++|+|||+
T Consensus       312 ~~~s~d~~~l~t~s~D~~I~vWdl  335 (337)
T d1gxra_         312 CDISVDDKYIVTGSGDKKATVYEV  335 (337)
T ss_dssp             EEECTTSCEEEEEETTSCEEEEEE
T ss_pred             EEEeCCCCEEEEEeCCCeEEEEEE
Confidence            999999999999999999999997

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=5.7e-38  Score=257.80  Aligned_cols=255  Identities=27%  Similarity=0.441  Sum_probs=227.5

Q ss_pred             EEcCCCCcceeeccccccceEEEEeCCCCCEEEEeeCCCeEEEEECCCCceeEEeeCCcccEEEEEECCCCCeEEEEecC
Q 021247           44 LWRPDDMQLERTNTGHCLGVVSVAAHPSGIIAASASLDSFVRVFDVDTNASIATLEASPSEVWQMQFDPKGTTLAVAGGG  123 (315)
Q Consensus        44 ~w~~~~~~~~~~~~~h~~~v~~~~~~~~g~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~  123 (315)
                      .|.+.. .....+.||.++|++++|+|++.+|+||+.|++|++||+.+++.+.++..|...|.+++++|++..+ +++..
T Consensus         2 ~w~p~~-~~~~~L~GH~~~I~~l~~sp~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~h~~~V~~~~~~~~~~~~-~~~~~   79 (317)
T d1vyhc1           2 EWIPRP-PEKYALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLL-ASCSA   79 (317)
T ss_dssp             CCCCCS-SCSCEEECCSSCEEEEEECSSSSEEEEEESSSCEEEEETTTCCCCEEECCCSSCEEEEEECTTSSEE-EEEET
T ss_pred             ccCCCC-CccEEEcCCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCEEEEEeCCCCcEEEEeeecccccc-ccccc
Confidence            465543 3345678999999999999999999999999999999999999999999999999999999998865 56778


Q ss_pred             CCeEEEEecCCcceeeeecCCCCCCCCCCccCCCCcceEEEEECCCCCEEEEecCCCcEEEEEcccceeeeeecCCccce
Q 021247          124 SASVKLWDTATWNLIATLSIPRPEGLKPTDKSSSKKFVLSVAWSPDGRRIACGSMDGTISVFDVTRAKFLHHLEGHFMPV  203 (315)
Q Consensus       124 d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~s~dg~i~i~d~~~~~~~~~~~~~~~~v  203 (315)
                      ++.+.+|+....+....+.             .+...+.++.++|+++.+++++.|+.+++||+++++....+.+|...+
T Consensus        80 ~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~  146 (317)
T d1vyhc1          80 DMTIKLWDFQGFECIRTMH-------------GHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWV  146 (317)
T ss_dssp             TSCCCEEETTSSCEEECCC-------------CCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCE
T ss_pred             ccccccccccccccccccc-------------cccccceeeeccCCCceEEeeccCcceeEeecccceeeeEEccCCCcc
Confidence            8899999987655443332             234458899999999999999999999999999999999999999999


Q ss_pred             EEEEEcCCCCcEEEEEeCCCeEEEEeCCCCeeEEEeecccccEEEEEEcCCC--------------------CeEEEEeC
Q 021247          204 RSLVYSPVDPRVLFSASDDTHVHMYDAEGKSLVTAMSGHASWVLSVDASPDG--------------------AAITTGSS  263 (315)
Q Consensus       204 ~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~i~~~~~~~~~--------------------~~l~s~~~  263 (315)
                      .++.|+| ++.++++++.|+.|++|+...+..+..+.+|...+..+.++|++                    .++++++.
T Consensus       147 ~~~~~~~-~~~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  225 (317)
T d1vyhc1         147 RMVRPNQ-DGTLIASCSNDQTVRVWVVATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSR  225 (317)
T ss_dssp             EEEEECT-TSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEET
T ss_pred             eeeeccc-CCCEEEEEeCCCeEEEEeeccceeeEEEecCCCCceEEEEeeccccceeeccccceeeeeccCCceeEeccC
Confidence            9999998 67899999999999999999999999999999999999998753                    47899999


Q ss_pred             CCcEEEEecCccceehcccccccceEEEEEeeCCCEEEEEeCCCcEEEeec
Q 021247          264 DRTVKLWDLNMRAAMQSMTNHTDQVWGVSFRPLGGRVVSVSDDKSISLYEY  314 (315)
Q Consensus       264 d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~i~i~~~  314 (315)
                      |+.|++||+++++.+.++.+|...|.+++|+|++++|++++.||+|+|||+
T Consensus       226 d~~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~  276 (317)
T d1vyhc1         226 DKTIKMWDVSTGMCLMTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDY  276 (317)
T ss_dssp             TSEEEEEETTTTEEEEEEECCSSCEEEEEECSSSSCEEEEETTTEEEEECC
T ss_pred             CCEEEEEECCCCcEEEEEeCCCCCEEEEEECCCCCEEEEEECCCeEEEEEC
Confidence            999999999999999999999999999999999999999999999999996

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=8.7e-38  Score=259.70  Aligned_cols=282  Identities=17%  Similarity=0.200  Sum_probs=220.8

Q ss_pred             ceEEEEEeecCCCCCcEEEEeeCCC-cEEEEcCCCC--cceeecccc-ccceEEEEeCC--CCCEEEEeeCCCeEEEEEC
Q 021247           16 SVWAVTWVPATETRPALLLTGSLDE-TVKLWRPDDM--QLERTNTGH-CLGVVSVAAHP--SGIIAASASLDSFVRVFDV   89 (315)
Q Consensus        16 ~v~~v~~~~~~~~~~~~l~sgs~d~-~v~~w~~~~~--~~~~~~~~h-~~~v~~~~~~~--~g~~l~s~~~d~~i~~w~~   89 (315)
                      .+++++|.|.++    .|+.++.+. .|+.|+....  .....+.+| ...|++++|+|  +|.++++|+.||+|++||+
T Consensus        19 ~~t~l~~~~~~~----~la~~~~~~~~i~~~~~~~~~~~~~~~~~gh~~~~v~~v~fsP~~~g~~lasgs~Dg~i~iWd~   94 (325)
T d1pgua1          19 FTTHLSYDPTTN----AIAYPCGKSAFVRCLDDGDSKVPPVVQFTGHGSSVVTTVKFSPIKGSQYLCSGDESGKVIVWGW   94 (325)
T ss_dssp             CCCCCEEETTTT----EEEEEETTEEEEEECCSSCCSSCSEEEECTTTTSCEEEEEECSSTTCCEEEEEETTSEEEEEEE
T ss_pred             CeEEEEECCCCC----EEEEEeCCCEEEEEEeCCCCCccceEEEeCCCCCCEEEEEEeeCCCCCEEEEEeCCCCEEEeee
Confidence            567899999775    477666554 4677765433  234456676 46799999997  5689999999999999998


Q ss_pred             CCCcee--------EEeeCCcccEEEEEECCCCCeEEEEe-cCCCeEEEEecCCcceeeeecCCCCCCCCCCccCCCCcc
Q 021247           90 DTNASI--------ATLEASPSEVWQMQFDPKGTTLAVAG-GGSASVKLWDTATWNLIATLSIPRPEGLKPTDKSSSKKF  160 (315)
Q Consensus        90 ~~~~~~--------~~~~~~~~~v~~~~~~~~~~~~~~~~-~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  160 (315)
                      ..+...        ..+..+..+|.+++|+|+++.+++++ +.++.+.+|+..+++.+..+.             .|...
T Consensus        95 ~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~h~~~  161 (325)
T d1pgua1          95 TFDKESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCVVGEGRDNFGVFISWDSGNSLGEVS-------------GHSQR  161 (325)
T ss_dssp             EEEGGGTEEEEEEEEEEECCSSCEEEEEECTTSSEEEEEECCSSCSEEEEETTTCCEEEECC-------------SCSSC
T ss_pred             cCCcceeeeecccccccccccCcEEEEEECCCCCccceeeccccceEEEEeecccccceeee-------------ecccc
Confidence            765422        23455778899999999999876655 347789999998877766553             34556


Q ss_pred             eEEEEECCCCCE-EEEecCCCcEEEEEcccceeeeee---cCCccceEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCeeE
Q 021247          161 VLSVAWSPDGRR-IACGSMDGTISVFDVTRAKFLHHL---EGHFMPVRSLVYSPVDPRVLFSASDDTHVHMYDAEGKSLV  236 (315)
Q Consensus       161 i~~~~~~~~~~~-l~~~s~dg~i~i~d~~~~~~~~~~---~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~  236 (315)
                      |.+++|+|++.+ +++++.|+.+++||+.+.+.....   ..|...|.+++|+|+.+.++++++.|+.|++||.+.++.+
T Consensus       162 v~~~~~~~~~~~~~~~~~~d~~v~~~d~~~~~~~~~~~~~~~~~~~v~~v~~~pd~~~~l~s~~~d~~i~iwd~~~~~~~  241 (325)
T d1pgua1         162 INACHLKQSRPMRSMTVGDDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFL  241 (325)
T ss_dssp             EEEEEECSSSSCEEEEEETTTEEEEEETTTBEEEEEECSSSCTTCCEEEEEECSTTCCEEEEEETTCCEEEEETTTCCEE
T ss_pred             cccccccccccceEEEeecccccccccccccccceecccccCCCCccEEeeeccccceeccccccccceeeeeecccccc
Confidence            999999998875 678999999999999877765554   4567789999999977889999999999999999999999


Q ss_pred             EEeecccccEEEEEEc---CCCCeEEEEeCCCcEEEEecCccceehcccccccc--eEEEEEeeC-CCEEEEEeCCCcEE
Q 021247          237 TAMSGHASWVLSVDAS---PDGAAITTGSSDRTVKLWDLNMRAAMQSMTNHTDQ--VWGVSFRPL-GGRVVSVSDDKSIS  310 (315)
Q Consensus       237 ~~~~~~~~~i~~~~~~---~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~--v~~~~~s~~-~~~l~s~~~d~~i~  310 (315)
                      ..+.+|...+..+.|+   |++++|++++.|+.|+|||+++++.++.+..|...  +..+++.+. +.+|+++|.||+|+
T Consensus       242 ~~l~~~~~~v~~~~~s~~~~dg~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~dg~i~  321 (325)
T d1pgua1         242 KYIEDDQEPVQGGIFALSWLDSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVATGNGRIISLSLDGTLN  321 (325)
T ss_dssp             EECCBTTBCCCSCEEEEEESSSSEEEEEETTSEEEEEETTTTEEEEEEECCTTCGGGCEEEEEEEETTEEEEEETTSCEE
T ss_pred             ccccccccccccceeeeeccCCCEEEEEeCCCeEEEEECCCCCEEEEEEecCCcccCeEEEEEECCCCEEEEEECCCEEE
Confidence            9998888777655555   68899999999999999999999888776655432  333444333 34899999999999


Q ss_pred             Eeec
Q 021247          311 LYEY  314 (315)
Q Consensus       311 i~~~  314 (315)
                      |||+
T Consensus       322 vwdl  325 (325)
T d1pgua1         322 FYEL  325 (325)
T ss_dssp             EEET
T ss_pred             EEEC
Confidence            9996

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=6.5e-38  Score=265.20  Aligned_cols=241  Identities=22%  Similarity=0.269  Sum_probs=204.2

Q ss_pred             ccceEEEEeCCCCCEEEEeeCCCeEEEEECCCCc--eeEEeeCCcccEEEEEECCCCCeEEEEecCCCeEEEEecCCcce
Q 021247           60 CLGVVSVAAHPSGIIAASASLDSFVRVFDVDTNA--SIATLEASPSEVWQMQFDPKGTTLAVAGGGSASVKLWDTATWNL  137 (315)
Q Consensus        60 ~~~v~~~~~~~~g~~l~s~~~d~~i~~w~~~~~~--~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~~d~~~~~~  137 (315)
                      ..+|++++|+|+|.+|++++.|+.|++||+.+++  .+..+..|..+|.+++|+|+++++ ++++.|++|++||+.+.+.
T Consensus         7 ~~pIt~~~~s~dg~~la~~~~~~~i~iw~~~~~~~~~~~~l~gH~~~V~~l~fsp~~~~l-~s~s~D~~i~vWd~~~~~~   85 (371)
T d1k8kc_           7 VEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRI-VTCGTDRNAYVWTLKGRTW   85 (371)
T ss_dssp             SSCCCEEEECTTSSEEEEECSSSEEEEEEEETTEEEEEEEEECCSSCEEEEEEETTTTEE-EEEETTSCEEEEEEETTEE
T ss_pred             CCCeEEEEECCCCCEEEEEeCCCEEEEEECCCCCEEEEEEecCCCCCEEEEEECCCCCEE-EEEECCCeEEEEeeccccc
Confidence            3689999999999999999999999999998775  566788899999999999999865 6788999999999987665


Q ss_pred             eeeecCCCCCCCCCCccCCCCcceEEEEECCCCCEEEEecCCCcEEEEEccccee----eeeecCCccceEEEEEcCCCC
Q 021247          138 IATLSIPRPEGLKPTDKSSSKKFVLSVAWSPDGRRIACGSMDGTISVFDVTRAKF----LHHLEGHFMPVRSLVYSPVDP  213 (315)
Q Consensus       138 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~s~dg~i~i~d~~~~~~----~~~~~~~~~~v~~~~~~~~~~  213 (315)
                      .......           .+...|.+++|+|+++.|++++.|+.+++|++.....    ......|...|.+++|+| ++
T Consensus        86 ~~~~~~~-----------~~~~~v~~i~~~p~~~~l~~~s~d~~i~i~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p-~~  153 (371)
T d1k8kc_          86 KPTLVIL-----------RINRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHP-NS  153 (371)
T ss_dssp             EEEEECC-----------CCSSCEEEEEECTTSSEEEEEETTSSEEEEEEETTTTEEEEEEECTTCCSCEEEEEECT-TS
T ss_pred             ccccccc-----------cccccccccccccccccceeecccCcceeeeeecccccccccccccccccccccccccc-cc
Confidence            5444322           2344599999999999999999999999999865432    334557888999999999 67


Q ss_pred             cEEEEEeCCCeEEEEeCCCC------------------eeEEEeecccccEEEEEEcCCCCeEEEEeCCCcEEEEecCcc
Q 021247          214 RVLFSASDDTHVHMYDAEGK------------------SLVTAMSGHASWVLSVDASPDGAAITTGSSDRTVKLWDLNMR  275 (315)
Q Consensus       214 ~~l~s~~~d~~i~~wd~~~~------------------~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~d~~i~iwd~~~~  275 (315)
                      ++|++|+.|+.+++||....                  ..+.....|...|.+++|+|+++.|++++.|+.|++||+..+
T Consensus       154 ~~l~s~s~D~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s~~~d~~i~iwd~~~~  233 (371)
T d1k8kc_         154 VLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHDSTVCLADADKK  233 (371)
T ss_dssp             SEEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSSSEEEEEETTTEEEEEEGGGT
T ss_pred             cceeccccCcEEEEEeeccCccccccccccccccccceeeeeeccCccCcEEEEEeecccccccccccCCcceEEeeecc
Confidence            89999999999999997532                  244556788999999999999999999999999999999999


Q ss_pred             ceehcccccccceEEEEEeeCCCEEEEEeCCCcEEEeec
Q 021247          276 AAMQSMTNHTDQVWGVSFRPLGGRVVSVSDDKSISLYEY  314 (315)
Q Consensus       276 ~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~i~i~~~  314 (315)
                      ..+..+..|..+|.+++|+|++.+|+ +|.|+.+++|.+
T Consensus       234 ~~~~~~~~~~~~v~s~~fs~d~~~la-~g~d~~~~~~~~  271 (371)
T d1k8kc_         234 MAVATLASETLPLLAVTFITESSLVA-AGHDCFPVLFTY  271 (371)
T ss_dssp             TEEEEEECSSCCEEEEEEEETTEEEE-EETTSSCEEEEE
T ss_pred             cceeeeecccccceeeeecCCCCEEE-EEcCCceEEEEe
Confidence            99999999999999999999987665 456888888765

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=1.5e-37  Score=253.50  Aligned_cols=268  Identities=19%  Similarity=0.246  Sum_probs=214.6

Q ss_pred             hhhhhhccccceEEEEEeecCCCCCcEEEEeeCCCcEEEEcCCCCcceeeccccccceEEEEeCCCCCEEEEeeCCCeEE
Q 021247            6 LKSVENAHEESVWAVTWVPATETRPALLLTGSLDETVKLWRPDDMQLERTNTGHCLGVVSVAAHPSGIIAASASLDSFVR   85 (315)
Q Consensus         6 ~~~~~~~h~~~v~~v~~~~~~~~~~~~l~sgs~d~~v~~w~~~~~~~~~~~~~h~~~v~~~~~~~~g~~l~s~~~d~~i~   85 (315)
                      +..++.+|.++|++++|+|        |+|||.||+|++|+..+.     ..+|...|.++.+++++ .+++++.|++++
T Consensus         5 ~i~~l~gH~~~I~~l~~s~--------l~sgs~Dg~v~~Wd~~~~-----~~~h~~~V~~~~~~~~~-~~~s~s~D~~v~   70 (287)
T d1pgua2           5 VLKTISGHNKGITALTVNP--------LISGSYDGRIMEWSSSSM-----HQDHSNLIVSLDNSKAQ-EYSSISWDDTLK   70 (287)
T ss_dssp             EEEEECCCSSCEEEEETTT--------TEEEETTSCEEETTTTEE-----ECCCCSCEEEEECCSTT-CCEEEETTTEEE
T ss_pred             eeEEECCCCCceEEEEECc--------EEEEeCCCeEEEEECCCC-----CCCCCCCEEEEEecCCC-eEEEEeeccccc
Confidence            3456789999999999975        899999999999997643     35799999999998765 578999999999


Q ss_pred             EEECCCCceeEEeeCCcccEEEEEECCCCCeEEEEecCCCeEEEEecCCcceeeeecCCCCCCCCCCccCCCCcceEEEE
Q 021247           86 VFDVDTNASIATLEASPSEVWQMQFDPKGTTLAVAGGGSASVKLWDTATWNLIATLSIPRPEGLKPTDKSSSKKFVLSVA  165 (315)
Q Consensus        86 ~w~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~  165 (315)
                      +|++...+       ....+..+.+++++..+ ++ ..+..+.+|+..+++.+..+....                ...+
T Consensus        71 ~w~~~~~~-------~~~~~~~~~~~~~~~~~-~~-~~~~~~~~~~~~~~~~~~~~~~~~----------------~~~~  125 (287)
T d1pgua2          71 VNGITKHE-------FGSQPKVASANNDGFTA-VL-TNDDDLLILQSFTGDIIKSVRLNS----------------PGSA  125 (287)
T ss_dssp             ETTEEEEE-------CSSCEEEEEECSSSEEE-EE-ETTSEEEEEETTTCCEEEEEECSS----------------CEEE
T ss_pred             cccccccc-------cccceeeeeeccCCceE-EE-eecccceeeeccceeeeeeccccc----------------eeee
Confidence            99975321       23346677888876544 33 456788999998887776654321                1345


Q ss_pred             ECCCCCEEEEecCC-CcEEEEEcccceeeeeec-CCccceEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCeeEE-Eeecc
Q 021247          166 WSPDGRRIACGSMD-GTISVFDVTRAKFLHHLE-GHFMPVRSLVYSPVDPRVLFSASDDTHVHMYDAEGKSLVT-AMSGH  242 (315)
Q Consensus       166 ~~~~~~~l~~~s~d-g~i~i~d~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~-~~~~~  242 (315)
                      ++++++.+++++.+ +.+++|++...+....+. .|..++.+++|+| ++.+|++++.|+.|++||...++.+. .+..|
T Consensus       126 ~~~~~~~~~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~~h  204 (287)
T d1pgua2         126 VSLSQNYVAVGLEEGNTIQVFKLSDLEVSFDLKTPLRAKPSYISISP-SETYIAAGDVMGKILLYDLQSREVKTSRWAFR  204 (287)
T ss_dssp             EEECSSEEEEEETTTSCEEEEETTEEEEEEECSSCCSSCEEEEEECT-TSSEEEEEETTSCEEEEETTTTEEEECCSCCC
T ss_pred             eeccCcceeeeccccceeeeeeccccceeeeeeeccCCceeEEEecc-Cccccccccccccccceeeccccccccccccc
Confidence            66777888777766 479999997766655544 4778899999999 67799999999999999999887654 46789


Q ss_pred             cccEEEEEEcCC----------CCeEEEEeCCCcEEEEecCc-cceehcccccccceEEEEEeeCCCEEEEEeCCCcEEE
Q 021247          243 ASWVLSVDASPD----------GAAITTGSSDRTVKLWDLNM-RAAMQSMTNHTDQVWGVSFRPLGGRVVSVSDDKSISL  311 (315)
Q Consensus       243 ~~~i~~~~~~~~----------~~~l~s~~~d~~i~iwd~~~-~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~i~i  311 (315)
                      ...|.+++|+|.          +.+|++|+.|++|++||++. .+.+..+.+|.+.|++++|+|++ .|+++|.|++|+|
T Consensus       205 ~~~v~~~~~~p~~~~~~~~~~~~~~l~sgs~D~~i~iw~~~~~~~~~~~~~~h~~~V~~v~~~~~~-~l~s~g~D~~v~i  283 (287)
T d1pgua2         205 TSKINAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPMKIIKALNAHKDGVNNLLWETPS-TLVSSGADACIKR  283 (287)
T ss_dssp             SSCEEEEEECCCC------CCSCCEEEEEETTSCEEEEESSCTTCCEEETTSSTTCEEEEEEEETT-EEEEEETTSCEEE
T ss_pred             ccccceeeecccccccccccCCCCeeEeecCCCeEEEEECCCCCeEEEEeCCCCCCeEEEEECCCC-EEEEEECCCeEEE
Confidence            999999999875          46899999999999999976 45667778899999999999985 6999999999999


Q ss_pred             eec
Q 021247          312 YEY  314 (315)
Q Consensus       312 ~~~  314 (315)
                      |++
T Consensus       284 W~i  286 (287)
T d1pgua2         284 WNV  286 (287)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            985

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2e-36  Score=245.87  Aligned_cols=274  Identities=25%  Similarity=0.431  Sum_probs=220.4

Q ss_pred             hhccccceEEEEEeecCCCCCcEEEEeeCCCcEEEEcCCCCcceeeccccccceEEEEeCCCCCEEEEeeCCCeEEEEEC
Q 021247           10 ENAHEESVWAVTWVPATETRPALLLTGSLDETVKLWRPDDMQLERTNTGHCLGVVSVAAHPSGIIAASASLDSFVRVFDV   89 (315)
Q Consensus        10 ~~~h~~~v~~v~~~~~~~~~~~~l~sgs~d~~v~~w~~~~~~~~~~~~~h~~~v~~~~~~~~g~~l~s~~~d~~i~~w~~   89 (315)
                      ...|...|+|++|  ++    .+|+|||.||+|++||..+.++.+.+.+|..+|.++++  ++++|++++.|+.|++|++
T Consensus        11 ~~~~~~~V~c~~~--d~----~~l~sgs~Dg~i~vWd~~~~~~~~~l~~H~~~V~~v~~--~~~~l~s~s~D~~i~~~~~   82 (293)
T d1p22a2          11 RSETSKGVYCLQY--DD----QKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQY--DERVIITGSSDSTVRVWDV   82 (293)
T ss_dssp             CCSSCCCEEEEEC--CS----SEEEEEESSSCEEEEESSSCCEEEEECCCSSCEEEEEC--CSSEEEEEETTSCEEEEES
T ss_pred             cCCCCCCEEEEEE--cC----CEEEEEeCCCeEEEEECCCCcEEEEEecCCCCEeeeec--ccceeeccccccccccccc
Confidence            3578899999876  33    37999999999999999999999999999999999987  5789999999999999999


Q ss_pred             CCCceeEEeeCCcccEEEEEECCCCCeEEEEecCCCeEEEEecCCcceeeeecCCCCCCCCCCccCCCCcceEEEEECCC
Q 021247           90 DTNASIATLEASPSEVWQMQFDPKGTTLAVAGGGSASVKLWDTATWNLIATLSIPRPEGLKPTDKSSSKKFVLSVAWSPD  169 (315)
Q Consensus        90 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~  169 (315)
                      ..+................  .+... .++++..++.+.+||............          ...+...+..+.+.  
T Consensus        83 ~~~~~~~~~~~~~~~~~~~--~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~v~~~~~~--  147 (293)
T d1p22a2          83 NTGEMLNTLIHHCEAVLHL--RFNNG-MMVTCSKDRSIAVWDMASPTDITLRRV----------LVGHRAAVNVVDFD--  147 (293)
T ss_dssp             SSCCEEEEECCCCSCEEEE--ECCTT-EEEEEETTSCEEEEECSSSSCCEEEEE----------ECCCSSCEEEEEEE--
T ss_pred             ccccccccccccccccccc--ccccc-ceeecccccceeEeecccccccccccc----------ccccccccccceec--
Confidence            9988777665554444333  33334 346678899999999886543322211          11233346555554  


Q ss_pred             CCEEEEecCCCcEEEEEcccceeeeeecCCccceEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCeeEEEeecccccEEEE
Q 021247          170 GRRIACGSMDGTISVFDVTRAKFLHHLEGHFMPVRSLVYSPVDPRVLFSASDDTHVHMYDAEGKSLVTAMSGHASWVLSV  249 (315)
Q Consensus       170 ~~~l~~~s~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~i~~~  249 (315)
                      ...+++++.|+.+++||+++++.+..+.++...+..+.+++   ..+++++.|+.|++||.+....+....+|...+.. 
T Consensus       148 ~~~~~~~s~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~---~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~-  223 (293)
T d1p22a2         148 DKYIVSASGDRTIKVWNTSTCEFVRTLNGHKRGIACLQYRD---RLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRC-  223 (293)
T ss_dssp             TTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEEET---TEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEE-
T ss_pred             ccccccccCCCceeeecCCCCcEEEEEcccccccccccCCC---CeEEEecCCCEEEEEecccceeeeeecccceeeee-
Confidence            45788899999999999999999999999988988888764   58999999999999999999998888888888765 


Q ss_pred             EEcCCCCeEEEEeCCCcEEEEecCcc---------ceehcccccccceEEEEEeeCCCEEEEEeCCCcEEEee
Q 021247          250 DASPDGAAITTGSSDRTVKLWDLNMR---------AAMQSMTNHTDQVWGVSFRPLGGRVVSVSDDKSISLYE  313 (315)
Q Consensus       250 ~~~~~~~~l~s~~~d~~i~iwd~~~~---------~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~i~i~~  313 (315)
                       +++++.+|++|+.||.|++||+...         ..++++.+|.+.|++++|+  +++|+++|.||+|+|||
T Consensus       224 -~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~H~~~V~~v~~d--~~~l~s~s~Dg~i~iWD  293 (293)
T d1p22a2         224 -IRFDNKRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQFD--EFQIVSSSHDDTILIWD  293 (293)
T ss_dssp             -EECCSSEEEEEETTSCEEEEEHHHHTSTTSCTTTTEEEEECCCSSCCCCEEEC--SSCEEECCSSSEEEEEC
T ss_pred             -ccccceEEEEEcCCCEEEEEECCCCccccccCCceeeEEecCCCCCEEEEEEc--CCEEEEEecCCEEEEeC
Confidence             4567789999999999999998543         2355677899999999985  56899999999999997

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=4.9e-38  Score=260.71  Aligned_cols=296  Identities=13%  Similarity=0.101  Sum_probs=221.1

Q ss_pred             chhhhhhccccceEEEEEeecCCCCCcEEEEeeCCCcEEEEcCCCCcce---eeccccccceEEEEeCCC-CCEEEEeeC
Q 021247            5 GLKSVENAHEESVWAVTWVPATETRPALLLTGSLDETVKLWRPDDMQLE---RTNTGHCLGVVSVAAHPS-GIIAASASL   80 (315)
Q Consensus         5 ~~~~~~~~h~~~v~~v~~~~~~~~~~~~l~sgs~d~~v~~w~~~~~~~~---~~~~~h~~~v~~~~~~~~-g~~l~s~~~   80 (315)
                      ++-.++.+|++.|++|+|+|+++    +|++||.||+|++||.+.....   ....+|..+|.+++|+|+ +.++++|+.
T Consensus         2 ~~v~~~~~h~d~I~~l~fsp~~~----~L~s~s~Dg~v~iwd~~~~~~~~~~~~~~~h~~~V~~v~f~~~~~~~l~sg~~   77 (342)
T d1yfqa_           2 QIVQIEQAPKDYISDIKIIPSKS----LLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQIYVGTV   77 (342)
T ss_dssp             EEEECSSCCSSCEEEEEEEGGGT----EEEEEETTSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEESSSEEEEEEET
T ss_pred             CeEEcCCCCCCCEEEEEEeCCCC----EEEEEECCCeEEEEEccCCCcceEEEEecCCCCCEEEEEEeCCCCCEEEEccc
Confidence            44557789999999999999875    7999999999999998655432   233469999999999986 568999999


Q ss_pred             CCeEEEEECCCCceeEEeeCCcccEE-EEEECCCCCeEEEEecCCCeEEEEecCCcceeeeecCCCCCCCCCCccCCCCc
Q 021247           81 DSFVRVFDVDTNASIATLEASPSEVW-QMQFDPKGTTLAVAGGGSASVKLWDTATWNLIATLSIPRPEGLKPTDKSSSKK  159 (315)
Q Consensus        81 d~~i~~w~~~~~~~~~~~~~~~~~v~-~~~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~  159 (315)
                      |+.|++|++...........+..... ...+.+... .+++++.++++++||++..............       .....
T Consensus        78 d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~wd~~~~~~~~~~~~~~~~-------~~~~~  149 (342)
T d1yfqa_          78 QGEILKVDLIGSPSFQALTNNEANLGICRICKYGDD-KLIAASWDGLIEVIDPRNYGDGVIAVKNLNS-------NNTKV  149 (342)
T ss_dssp             TSCEEEECSSSSSSEEECBSCCCCSCEEEEEEETTT-EEEEEETTSEEEEECHHHHTTBCEEEEESCS-------SSSSS
T ss_pred             ccceeeeecccccccccccccccccccccccccccc-cccccccccccceeeccccccceeeeccccc-------ccccc
Confidence            99999999998877666655444333 333444444 5677889999999998765443322111110       01112


Q ss_pred             ceEEEEECCCCCEEEEecCCCcEEEEEcccceee---eeecCCccceEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCee-
Q 021247          160 FVLSVAWSPDGRRIACGSMDGTISVFDVTRAKFL---HHLEGHFMPVRSLVYSPVDPRVLFSASDDTHVHMYDAEGKSL-  235 (315)
Q Consensus       160 ~i~~~~~~~~~~~l~~~s~dg~i~i~d~~~~~~~---~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~-  235 (315)
                      ......+.+.+..+++++.|+.|++||+...+..   .....+...+.+..+.+.++..+++++.|+.+.+|+...... 
T Consensus       150 ~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~v~~~~~~~~~  229 (342)
T d1yfqa_         150 KNKIFTMDTNSSRLIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDD  229 (342)
T ss_dssp             CCCEEEEEECSSEEEEEESTTEEEEEESSCCTTCCCEEEECSCSSCEEEEEECSGGGCEEEEEETTSEEEEEECCTTCCS
T ss_pred             eeeeeeeeccCCceeeecCCCcEEEEecccCcccceeeeecccccceeeeEeecCCCCEEEeecCCCeEEEEEecCCcce
Confidence            2345667778889999999999999999765432   223344556777777777888999999999999998753211 


Q ss_pred             --------EE------EeecccccEEEEEEcCCCCeEEEEeCCCcEEEEecCccceehcccccccceEEEEEeeCCCEEE
Q 021247          236 --------VT------AMSGHASWVLSVDASPDGAAITTGSSDRTVKLWDLNMRAAMQSMTNHTDQVWGVSFRPLGGRVV  301 (315)
Q Consensus       236 --------~~------~~~~~~~~i~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~  301 (315)
                              ..      ....|...+++++|+|++++|+||+.||.|++||+++++.+.++..+ .....++|+|+++.|+
T Consensus       230 ~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~lasg~~Dg~v~vWD~~~~~~l~~~~~~-~~~~~~~~s~~~~~l~  308 (342)
T d1yfqa_         230 YNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNFAKF-NEDSVVKIACSDNILC  308 (342)
T ss_dssp             TTCTTCEEEECCCCCTTCCSSCCCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEECCCC-SSSEEEEEEECSSEEE
T ss_pred             eeccccceeeeeeeccCCCcccccceeEEecCCccEEEEECCCCEEEEEECCCCcEEEEecCC-CCCEEEEEEeCCCEEE
Confidence                    11      12356678999999999999999999999999999999888887644 3455688999999999


Q ss_pred             EEeCCCcEEEee
Q 021247          302 SVSDDKSISLYE  313 (315)
Q Consensus       302 s~~~d~~i~i~~  313 (315)
                      +++.|+++++|.
T Consensus       309 ~a~sdd~~~~~~  320 (342)
T d1yfqa_         309 LATSDDTFKTNA  320 (342)
T ss_dssp             EEEECTHHHHCS
T ss_pred             EEEcCCcEEEee
Confidence            998888777664

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=6.2e-37  Score=261.09  Aligned_cols=299  Identities=19%  Similarity=0.354  Sum_probs=213.6

Q ss_pred             hhhhhccccceEEEEEeecCCCCCcEEEEeeCCCcEEEEcCCCCcce------eeccccccceE------EEEeCC-CCC
Q 021247            7 KSVENAHEESVWAVTWVPATETRPALLLTGSLDETVKLWRPDDMQLE------RTNTGHCLGVV------SVAAHP-SGI   73 (315)
Q Consensus         7 ~~~~~~h~~~v~~v~~~~~~~~~~~~l~sgs~d~~v~~w~~~~~~~~------~~~~~h~~~v~------~~~~~~-~g~   73 (315)
                      .++.++|..+|++|++.+      .+++|||.|++|++|+..+.+..      .....|..++.      .+..++ ++.
T Consensus         7 ~~~~~~H~~~I~~v~~~~------~~l~S~S~D~~iriWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (393)
T d1sq9a_           7 ANAGKAHDADIFSVSACN------SFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQAIERDAFELC   80 (393)
T ss_dssp             EEESSCSSSCEEEEEECS------SEEEEEETTSEEEEEESBCCTTCCGGGGEEEEECCTTCEEEEEEEEEEETTTEEEE
T ss_pred             eecCCcccCccEEEEEeC------CEEEEEECCCeEEEEECCCCCCCcccceeEeeeeccCCceEeeeEeeeccCCCCCc
Confidence            356789999999999754      37999999999999996543321      11123333322      222222 345


Q ss_pred             EEEEeeCCCeEEEEECCCCceeE-----Ee-----eCCcccEEEEEECCCCC----eEEEEecCCCeEEEEecCCcceee
Q 021247           74 IAASASLDSFVRVFDVDTNASIA-----TL-----EASPSEVWQMQFDPKGT----TLAVAGGGSASVKLWDTATWNLIA  139 (315)
Q Consensus        74 ~l~s~~~d~~i~~w~~~~~~~~~-----~~-----~~~~~~v~~~~~~~~~~----~~~~~~~~d~~i~~~d~~~~~~~~  139 (315)
                      ++++++.||.|++|++.......     ..     ..+...++.+++.++..    ..+++++.|+++++||+.......
T Consensus        81 ~~~s~~~dg~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~vw~~~~~~~~~  160 (393)
T d1sq9a_          81 LVATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADES  160 (393)
T ss_dssp             EEEEEETTSCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEESSSSHH
T ss_pred             EEEEEeCCCcEEEEEccCCCceeeeeccccceeeeccCCCceEEEEEecCCCcccccEEEEEcCCCcEEEEEeecCCccc
Confidence            78899999999999976543211     11     12345678888877542    456778899999999985321100


Q ss_pred             e-ecCCCCC----CCCCCccCCCCcceEEEEECCCCCEEEEecCCCcEEEEEcccceeeee------ecCCccceEEEEE
Q 021247          140 T-LSIPRPE----GLKPTDKSSSKKFVLSVAWSPDGRRIACGSMDGTISVFDVTRAKFLHH------LEGHFMPVRSLVY  208 (315)
Q Consensus       140 ~-~~~~~~~----~~~~~~~~~~~~~i~~~~~~~~~~~l~~~s~dg~i~i~d~~~~~~~~~------~~~~~~~v~~~~~  208 (315)
                      . .......    .........+...+.+++|+|++ +|++|+.|+.|++||+.+++.+..      +.+|..+|++++|
T Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg-~lasgs~Dg~i~iwd~~~~~~~~~~~~~~~l~~h~~~V~~l~~  239 (393)
T d1sq9a_         161 NSLTLNWSPTLELQGTVESPMTPSQFATSVDISERG-LIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKF  239 (393)
T ss_dssp             HHTTTCCCCEEEEEEEECCSSSSCCCCCEEEECTTS-EEEEECTTSEEEEEETTTTEEEEEEECCC---CCCCCEEEEEE
T ss_pred             ceeeeeeccceecccceecccCCCCcEEEEEECCCC-EEEEEeCCCcEEEEeecccccccccccccccccccceEEEccc
Confidence            0 0000000    00000112234558899999987 889999999999999998876543      4568899999999


Q ss_pred             cCCCCcEEEEEeCCC---eEEEEeCCCCeeEEEe-------------ecccccEEEEEEcCCCCeEEEEeCCCcEEEEec
Q 021247          209 SPVDPRVLFSASDDT---HVHMYDAEGKSLVTAM-------------SGHASWVLSVDASPDGAAITTGSSDRTVKLWDL  272 (315)
Q Consensus       209 ~~~~~~~l~s~~~d~---~i~~wd~~~~~~~~~~-------------~~~~~~i~~~~~~~~~~~l~s~~~d~~i~iwd~  272 (315)
                      +| ++++|++|+.|+   .|++||.+.++.+..+             .+|..+|++++|+|++++|+||+.|++|++||+
T Consensus       240 sp-dg~~l~sgs~D~t~~~i~lwd~~~g~~~~~l~~~~~~~~~~~~~~gH~~~V~~l~fspd~~~l~S~s~D~~v~vWd~  318 (393)
T d1sq9a_         240 SP-QGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWDV  318 (393)
T ss_dssp             CS-STTEEEEEEEETTEEEEEEEETTTCCEEEEECBC--------CCBSBSSCEEEEEECSSSSEEEEEETTSEEEEEET
T ss_pred             cc-ccceeeeecCCCCcceeeecccccceeeeeeccccccccceeeeecccCceeeeccCCCCCeeEEECCCCEEEEEEC
Confidence            99 678999999886   5899999988766655             379999999999999999999999999999999


Q ss_pred             Cccceehccccccc---------------------ceEEEEEeeCC----------CEEEEEeCCCcEEEee
Q 021247          273 NMRAAMQSMTNHTD---------------------QVWGVSFRPLG----------GRVVSVSDDKSISLYE  313 (315)
Q Consensus       273 ~~~~~~~~~~~~~~---------------------~v~~~~~s~~~----------~~l~s~~~d~~i~i~~  313 (315)
                      ++++++.++.+|.+                     .++++.|.+.+          ..|++++.|+.|++|.
T Consensus       319 ~~g~~~~~l~gH~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ir~~~  390 (393)
T d1sq9a_         319 KTKERITTLNMHCDDIEIEEDILAVDEHGDSLAEPGVFDVKFLKKGWRSGMGADLNESLCCVCLDRSIRWFR  390 (393)
T ss_dssp             TTTEEEEEEECCGGGCSSGGGCCCBCTTSCBCSSCCEEEEEEECTTTSBSTTCTTSCEEEEEETTTEEEEEE
T ss_pred             CCCCEEEEECCcCCcccCCccEEEECCCCCEEEEcccceEEECccCceeccccCCCCEEEEEEcCCeEEEEe
Confidence            99999888887753                     35667776643          3488999999999984

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=4.3e-36  Score=254.74  Aligned_cols=251  Identities=25%  Similarity=0.397  Sum_probs=209.4

Q ss_pred             hccccceEEEEEeecCCCCCcEEEEeeCCCcEEEEcCCCCcceeeccccccceEEEEeCCCCCEEEEeeCCCeEEEEECC
Q 021247           11 NAHEESVWAVTWVPATETRPALLLTGSLDETVKLWRPDDMQLERTNTGHCLGVVSVAAHPSGIIAASASLDSFVRVFDVD   90 (315)
Q Consensus        11 ~~h~~~v~~v~~~~~~~~~~~~l~sgs~d~~v~~w~~~~~~~~~~~~~h~~~v~~~~~~~~g~~l~s~~~d~~i~~w~~~   90 (315)
                      ..|...|++++|+|.++    +|++|+.||.|++|+....+......+|...|.++.+++++..+++++.++.+++||..
T Consensus       118 ~~~~~~V~~l~~s~~~~----~l~s~~~dg~v~i~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~i~~~d~~  193 (388)
T d1erja_         118 PSSDLYIRSVCFSPDGK----FLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLR  193 (388)
T ss_dssp             -CCCCBEEEEEECTTSS----EEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETT
T ss_pred             cCCCCCEEEEEECCCCC----cceecccccccccccccccccccccccccccccccccccccccccccccceeeeeeecc
Confidence            47888999999999765    79999999999999999888888889999999999999999999999999999999999


Q ss_pred             CCceeEEeeCCcccEEEEEECCCCCeEEEEecCCCeEEEEecCCcceeeeecCCCCCCCCCCccCCCCcceEEEEECCCC
Q 021247           91 TNASIATLEASPSEVWQMQFDPKGTTLAVAGGGSASVKLWDTATWNLIATLSIPRPEGLKPTDKSSSKKFVLSVAWSPDG  170 (315)
Q Consensus        91 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~  170 (315)
                      +.........+.. ...+.+.+....++++++.|+.|++||.++++....+.....      ....|...|.+++|+|++
T Consensus       194 ~~~~~~~~~~~~~-~~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~------~~~~h~~~v~~l~~s~~~  266 (388)
T d1erja_         194 TGQCSLTLSIEDG-VTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENE------SGTGHKDSVYSVVFTRDG  266 (388)
T ss_dssp             TTEEEEEEECSSC-EEEEEECSTTCCEEEEEETTSCEEEEETTTCCEEEEEC------------CCCSSCEEEEEECTTS
T ss_pred             ccccccccccccc-cccccccCCCCCeEEEEcCCCeEEEeecccCccceeeccccc------cccCCCCCEEEEEECCCC
Confidence            9887776665544 445556665445667889999999999998887766643221      123456779999999999


Q ss_pred             CEEEEecCCCcEEEEEccccee------------eeeecCCccceEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCeeEEE
Q 021247          171 RRIACGSMDGTISVFDVTRAKF------------LHHLEGHFMPVRSLVYSPVDPRVLFSASDDTHVHMYDAEGKSLVTA  238 (315)
Q Consensus       171 ~~l~~~s~dg~i~i~d~~~~~~------------~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~  238 (315)
                      ++|++++.|+.|++||+++++.            ......|...|.+++|+| ++++|++|+.|+.|++||+++++++..
T Consensus       267 ~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~sg~~dg~i~vwd~~~~~~~~~  345 (388)
T d1erja_         267 QSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQ-NDEYILSGSKDRGVLFWDKKSGNPLLM  345 (388)
T ss_dssp             SEEEEEETTSEEEEEEC---------------CEEEEEECCSSCEEEEEECG-GGCEEEEEETTSEEEEEETTTCCEEEE
T ss_pred             CEEEEEECCCcEEEEeccCCccccccccccccceeeecccccceEEEEEECC-CCCEEEEEeCCCEEEEEECCCCcEEEE
Confidence            9999999999999999875543            233456888999999998 678999999999999999999999999


Q ss_pred             eecccccEEEEEE------cCCCCeEEEEeCCCcEEEEecC
Q 021247          239 MSGHASWVLSVDA------SPDGAAITTGSSDRTVKLWDLN  273 (315)
Q Consensus       239 ~~~~~~~i~~~~~------~~~~~~l~s~~~d~~i~iwd~~  273 (315)
                      +.+|.+.|.++++      +|++.+|+||+.||+|+||+++
T Consensus       346 l~~H~~~V~~~~~~~~~~~spd~~~l~s~s~Dg~I~iW~~~  386 (388)
T d1erja_         346 LQGHRNSVISVAVANGSSLGPEYNVFATGSGDCKARIWKYK  386 (388)
T ss_dssp             EECCSSCEEEEEECSSCTTCTTCEEEEEEETTSEEEEEEEE
T ss_pred             EeCCCCCEEEEEEecCcccCCCCCEEEEEeCCCEEEEEeee
Confidence            9999999999875      5688999999999999999985

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=100.00  E-value=9.7e-36  Score=243.99  Aligned_cols=247  Identities=18%  Similarity=0.226  Sum_probs=199.4

Q ss_pred             cceeeccccccceEEEEeCCCCCEEEEeeCCCeEEEEECCCCceeEEe-eCCcccEEEEEECCCCCeEEEEecCCCeEEE
Q 021247           51 QLERTNTGHCLGVVSVAAHPSGIIAASASLDSFVRVFDVDTNASIATL-EASPSEVWQMQFDPKGTTLAVAGGGSASVKL  129 (315)
Q Consensus        51 ~~~~~~~~h~~~v~~~~~~~~g~~l~s~~~d~~i~~w~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~  129 (315)
                      ++.+.+.||..+|++++|+|+|++|++|+.|++|++||+++++.+..+ ..|...|.+++|+|++..  ++++.|+.+++
T Consensus         3 ~~~~~~~GH~~~V~~l~~s~dg~~l~s~s~Dg~v~vWd~~~~~~~~~~~~~h~~~v~~v~~~~~g~~--~~~~~d~~v~~   80 (299)
T d1nr0a2           3 SIDQVRYGHNKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIKTTSKGDL--FTVSWDDHLKV   80 (299)
T ss_dssp             EEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEECSSCSCSSCEEEEEECTTSCE--EEEETTTEEEE
T ss_pred             ccceEcCCCCCCcEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEcCCCCCcEEEEEeecccee--ecccceeeEEE
Confidence            456778999999999999999999999999999999999999888776 457889999999999863  34567899999


Q ss_pred             EecCCcceeeeecCCCCCCCCCCccCCCCcceEEEEECCCCCEEEEecCCCcEEEEEcccceeeeeecCCccceEEEEEc
Q 021247          130 WDTATWNLIATLSIPRPEGLKPTDKSSSKKFVLSVAWSPDGRRIACGSMDGTISVFDVTRAKFLHHLEGHFMPVRSLVYS  209 (315)
Q Consensus       130 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~s~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~  209 (315)
                      |+........          .......+...+.+++|+|+++.+++++ ++.+.+|+...  ......  ...+.+++|+
T Consensus        81 ~~~~~~~~~~----------~~~~~~~~~~~~~~~~~s~~g~~~~~~~-~~~i~~~~~~~--~~~~~~--~~~~~~~~~s  145 (299)
T d1nr0a2          81 VPAGGSGVDS----------SKAVANKLSSQPLGLAVSADGDIAVAAC-YKHIAIYSHGK--LTEVPI--SYNSSCVALS  145 (299)
T ss_dssp             ECSSSSSSCT----------TSCCEEECSSCEEEEEECTTSSCEEEEE-SSEEEEEETTE--EEEEEC--SSCEEEEEEC
T ss_pred             eccCCccccc----------cccccccccccccccccccccccccccc-ccccccccccc--cccccc--cccccccccc
Confidence            9976432110          0011122344578999999998777665 56899998543  222222  3356889999


Q ss_pred             CCCCcEEEEEeCCCeEEEEeCCCCeeEE-EeecccccEEEEEEcCCCCeEEEEeCCCcEEEEecCcccee---hcccccc
Q 021247          210 PVDPRVLFSASDDTHVHMYDAEGKSLVT-AMSGHASWVLSVDASPDGAAITTGSSDRTVKLWDLNMRAAM---QSMTNHT  285 (315)
Q Consensus       210 ~~~~~~l~s~~~d~~i~~wd~~~~~~~~-~~~~~~~~i~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~---~~~~~~~  285 (315)
                      | +++++++++.|+.|++||+++++... ....|...|.+++|+|++++|++++.|+.|++||+..+...   ..+..|.
T Consensus       146 ~-~~~~l~~g~~dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~h~  224 (299)
T d1nr0a2         146 N-DKQFVAVGGQDSKVHVYKLSGASVSEVKTIVHPAEITSVAFSNNGAFLVATDQSRKVIPYSVANNFELAHTNSWTFHT  224 (299)
T ss_dssp             T-TSCEEEEEETTSEEEEEEEETTEEEEEEEEECSSCEEEEEECTTSSEEEEEETTSCEEEEEGGGTTEESCCCCCCCCS
T ss_pred             c-cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            8 67899999999999999998776543 44578899999999999999999999999999999876543   4456789


Q ss_pred             cceEEEEEeeCCCEEEEEeCCCcEEEeecC
Q 021247          286 DQVWGVSFRPLGGRVVSVSDDKSISLYEYS  315 (315)
Q Consensus       286 ~~v~~~~~s~~~~~l~s~~~d~~i~i~~~~  315 (315)
                      ..|++++|+|++.+|++++.|++|+|||+.
T Consensus       225 ~~v~~l~~s~~~~~l~sgs~dg~i~iwd~~  254 (299)
T d1nr0a2         225 AKVACVSWSPDNVRLATGSLDNSVIVWNMN  254 (299)
T ss_dssp             SCEEEEEECTTSSEEEEEETTSCEEEEETT
T ss_pred             cccccccccccccceEEEcCCCEEEEEECC
Confidence            999999999999999999999999999963

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=1.5e-35  Score=246.07  Aligned_cols=249  Identities=18%  Similarity=0.241  Sum_probs=201.2

Q ss_pred             hcc-ccceEEEEEeecCCCCCcEEEEeeCCCcEEEEcCCCCcce--------eeccccccceEEEEeCCCCCEEEEee--
Q 021247           11 NAH-EESVWAVTWVPATETRPALLLTGSLDETVKLWRPDDMQLE--------RTNTGHCLGVVSVAAHPSGIIAASAS--   79 (315)
Q Consensus        11 ~~h-~~~v~~v~~~~~~~~~~~~l~sgs~d~~v~~w~~~~~~~~--------~~~~~h~~~v~~~~~~~~g~~l~s~~--   79 (315)
                      .+| ...|++++|+|..+.  .+|++|+.||+|++|+....+..        .....|..+|.+++|+++|.++++++  
T Consensus        59 ~gh~~~~v~~v~fsP~~~g--~~lasgs~Dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~~  136 (325)
T d1pgua1          59 TGHGSSVVTTVKFSPIKGS--QYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCVVGEG  136 (325)
T ss_dssp             CTTTTSCEEEEEECSSTTC--CEEEEEETTSEEEEEEEEEEGGGTEEEEEEEEEEECCSSCEEEEEECTTSSEEEEEECC
T ss_pred             eCCCCCCEEEEEEeeCCCC--CEEEEEeCCCCEEEeeecCCcceeeeecccccccccccCcEEEEEECCCCCccceeecc
Confidence            355 578999999996542  48999999999999997543322        12345778999999999999888765  


Q ss_pred             CCCeEEEEECCCCceeEEeeCCcccEEEEEECCCCCeEEEEecCCCeEEEEecCCcceeeeecCCCCCCCCCCccCCCCc
Q 021247           80 LDSFVRVFDVDTNASIATLEASPSEVWQMQFDPKGTTLAVAGGGSASVKLWDTATWNLIATLSIPRPEGLKPTDKSSSKK  159 (315)
Q Consensus        80 ~d~~i~~w~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~  159 (315)
                      .++.+++|+.++++.+..+..|...|.+++|+|++..++++++.|+.+++||....+........          ..+..
T Consensus       137 ~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~d~~v~~~d~~~~~~~~~~~~~----------~~~~~  206 (325)
T d1pgua1         137 RDNFGVFISWDSGNSLGEVSGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPFKFSASDRTH----------HKQGS  206 (325)
T ss_dssp             SSCSEEEEETTTCCEEEECCSCSSCEEEEEECSSSSCEEEEEETTTEEEEEETTTBEEEEEECSS----------SCTTC
T ss_pred             ccceEEEEeecccccceeeeecccccccccccccccceEEEeecccccccccccccccceecccc----------cCCCC
Confidence            46789999999999999999999999999999999888888999999999999887766554322          23455


Q ss_pred             ceEEEEECCC-CCEEEEecCCCcEEEEEcccceeeeeecCCccceEEEEEcC--CCCcEEEEEeCCCeEEEEeCCCCeeE
Q 021247          160 FVLSVAWSPD-GRRIACGSMDGTISVFDVTRAKFLHHLEGHFMPVRSLVYSP--VDPRVLFSASDDTHVHMYDAEGKSLV  236 (315)
Q Consensus       160 ~i~~~~~~~~-~~~l~~~s~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~--~~~~~l~s~~~d~~i~~wd~~~~~~~  236 (315)
                      .|.+++|+|+ +++|++++.|+.|++||+++++.+..+.+|..++..+.|++  .++++|++++.|+.|++||++.++++
T Consensus       207 ~v~~v~~~pd~~~~l~s~~~d~~i~iwd~~~~~~~~~l~~~~~~v~~~~~s~~~~dg~~l~s~s~D~~i~iwd~~~~~~~  286 (325)
T d1pgua1         207 FVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFLKYIEDDQEPVQGGIFALSWLDSQKFATVGADATIRVWDVTTSKCV  286 (325)
T ss_dssp             CEEEEEECSTTCCEEEEEETTCCEEEEETTTCCEEEECCBTTBCCCSCEEEEEESSSSEEEEEETTSEEEEEETTTTEEE
T ss_pred             ccEEeeeccccceeccccccccceeeeeeccccccccccccccccccceeeeeccCCCEEEEEeCCCeEEEEECCCCCEE
Confidence            6999999996 67889999999999999999999999998887776555541  25779999999999999999999988


Q ss_pred             EEeeccccc--EE--EEEEcCCCCeEEEEeCCCcEEEEec
Q 021247          237 TAMSGHASW--VL--SVDASPDGAAITTGSSDRTVKLWDL  272 (315)
Q Consensus       237 ~~~~~~~~~--i~--~~~~~~~~~~l~s~~~d~~i~iwd~  272 (315)
                      ..+..|...  +.  ++.+.++ .+|++++.||+|++||+
T Consensus       287 ~~~~~~~~~~~~~~~~~~~~~~-~~l~s~s~dg~i~vwdl  325 (325)
T d1pgua1         287 QKWTLDKQQLGNQQVGVVATGN-GRIISLSLDGTLNFYEL  325 (325)
T ss_dssp             EEEECCTTCGGGCEEEEEEEET-TEEEEEETTSCEEEEET
T ss_pred             EEEEecCCcccCeEEEEEECCC-CEEEEEECCCEEEEEEC
Confidence            877655432  33  3444443 47899999999999996

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=1.3e-33  Score=234.44  Aligned_cols=253  Identities=23%  Similarity=0.309  Sum_probs=211.0

Q ss_pred             CcceeeccccccceEEEEeCCCCCEEEEeeCCCeEEEEECCCCceeEEeeCCcccEEEEEECCCCCeEEEEecCCCeEEE
Q 021247           50 MQLERTNTGHCLGVVSVAAHPSGIIAASASLDSFVRVFDVDTNASIATLEASPSEVWQMQFDPKGTTLAVAGGGSASVKL  129 (315)
Q Consensus        50 ~~~~~~~~~h~~~v~~~~~~~~g~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~  129 (315)
                      .+..+.+.||..+|++++|+|++.+|++|+.||+|++||+.+++.+..+..|..+|.+++|+|+++++ ++++.|+.+++
T Consensus        45 ~~~~~tL~GH~~~I~~l~~s~~~~~l~sgs~Dg~v~iWd~~~~~~~~~~~~~~~~v~~v~~~~~~~~l-~~~~~d~~i~~  123 (340)
T d1tbga_          45 MRTRRTLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYV-ACGGLDNICSI  123 (340)
T ss_dssp             CCEEEEECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTTEEEEEEECSCSCEEEEEECTTSSEE-EEEETTCCEEE
T ss_pred             eeeeEEECCCCCCEEEEEECCCCCEEEEEECCCceeeeecccceeEEEEecccccEEeeEeeccceee-eeecccceeec
Confidence            34567789999999999999999999999999999999999999999999999999999999998865 67789999999


Q ss_pred             EecCCcceeeeecCCCCCCCCCCccCCCCcceEEEEECCCCCEEEEecCCCcEEEEEcccceeeeeecCCccceEEEEEc
Q 021247          130 WDTATWNLIATLSIPRPEGLKPTDKSSSKKFVLSVAWSPDGRRIACGSMDGTISVFDVTRAKFLHHLEGHFMPVRSLVYS  209 (315)
Q Consensus       130 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~s~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~  209 (315)
                      |+............         ....+..... ......+..+.....+.....++............+...+....+.
T Consensus       124 ~~~~~~~~~~~~~~---------~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  193 (340)
T d1tbga_         124 YNLKTREGNVRVSR---------ELAGHTGYLS-CCRFLDDNQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLA  193 (340)
T ss_dssp             EESSSSCSCCCEEE---------EECCCSSCEE-EEEEEETTEEEEEETTTEEEEEETTTTEEEEEEECCSSCEEEEEEC
T ss_pred             ccccccccccccce---------eccccccccc-ccccccccccccccccccccccccccccccccccccceeEeeeccc
Confidence            99765332111100         0011222233 3333445677788889999999988877777777788888888888


Q ss_pred             CCCCcEEEEEeCCCeEEEEeCCCCeeEEEeecccccEEEEEEcCCCCeEEEEeCCCcEEEEecCccceehcc--cccccc
Q 021247          210 PVDPRVLFSASDDTHVHMYDAEGKSLVTAMSGHASWVLSVDASPDGAAITTGSSDRTVKLWDLNMRAAMQSM--TNHTDQ  287 (315)
Q Consensus       210 ~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~--~~~~~~  287 (315)
                      + ...++++++.|+.|++||.+.++.+..+.+|...|++++|+|++++|++|+.|+.|++|+++.......+  ..+...
T Consensus       194 ~-~~~~~~~~~~d~~v~i~d~~~~~~~~~~~~h~~~i~~v~~~p~~~~l~s~s~d~~i~~~~~~~~~~~~~~~~~~~~~~  272 (340)
T d1tbga_         194 P-DTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICG  272 (340)
T ss_dssp             T-TSSEEEEEETTTEEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCTTCCSC
T ss_pred             c-ccceeEEeecCceEEEEECCCCcEEEEEeCCCCCeEEEEECCCCCEEEEEeCCCeEEEEeecccccccccccccccCc
Confidence            7 6778999999999999999999999999999999999999999999999999999999999987765543  456678


Q ss_pred             eEEEEEeeCCCEEEEEeCCCcEEEeec
Q 021247          288 VWGVSFRPLGGRVVSVSDDKSISLYEY  314 (315)
Q Consensus       288 v~~~~~s~~~~~l~s~~~d~~i~i~~~  314 (315)
                      +.+++|+|++++|++++.||+|+|||+
T Consensus       273 i~~~~~s~~~~~l~~g~~dg~i~iwd~  299 (340)
T d1tbga_         273 ITSVSFSKSGRLLLAGYDDFNCNVWDA  299 (340)
T ss_dssp             EEEEEECSSSCEEEEEETTSCEEEEET
T ss_pred             eEEEEECCCCCEEEEEECCCEEEEEEC
Confidence            999999999999999999999999996

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=3.7e-32  Score=225.32  Aligned_cols=259  Identities=25%  Similarity=0.415  Sum_probs=200.7

Q ss_pred             EcCCCCcceeeccccccceEEEEeCCCCCEEEEeeCCCeEEEEECCCCceeEEeeCCcccEEEEEECCCCCeEEEEecCC
Q 021247           45 WRPDDMQLERTNTGHCLGVVSVAAHPSGIIAASASLDSFVRVFDVDTNASIATLEASPSEVWQMQFDPKGTTLAVAGGGS  124 (315)
Q Consensus        45 w~~~~~~~~~~~~~h~~~v~~~~~~~~g~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d  124 (315)
                      |+..+.+..+.++||.++|.+ +++++|++|+||+.|++|++||+.+++++.++..|...|.+++|+|+   ++++++.|
T Consensus         1 W~~~~~~~~~~l~GH~~~V~s-~~~~~g~~l~sgs~Dg~i~vWd~~~~~~~~~~~~h~~~V~~v~~~~~---~l~s~s~D   76 (342)
T d2ovrb2           1 WRRGELKSPKVLKGHDDHVIT-CLQFCGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQMRDN---IIISGSTD   76 (342)
T ss_dssp             HHHSCCCCCEEEECSTTSCEE-EEEEETTEEEEEETTSCEEEEETTTCCEEEECCCCSSCEEEEEEETT---EEEEEETT
T ss_pred             CCCCCCCcCEEECCcCCceEE-EEEECCCEEEEEeCCCeEEEEECCCCCEEEEEeCCCCCEEEEEeCCC---ccccceec
Confidence            555566677788999999875 46678999999999999999999999999999999999999999875   66889999


Q ss_pred             CeEEEEecCCcceeeeecCCCCCC----------------CCC--Ccc-CC------CCcceEEEEECCCCCEEEEecCC
Q 021247          125 ASVKLWDTATWNLIATLSIPRPEG----------------LKP--TDK-SS------SKKFVLSVAWSPDGRRIACGSMD  179 (315)
Q Consensus       125 ~~i~~~d~~~~~~~~~~~~~~~~~----------------~~~--~~~-~~------~~~~i~~~~~~~~~~~l~~~s~d  179 (315)
                      +++++|+.................                ...  ... ..      ...........+....++.++.|
T Consensus        77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d  156 (342)
T d2ovrb2          77 RTLKVWNAETGECIHTLYGHTSTVRCMHLHEKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQYDGRRVVSGAYD  156 (342)
T ss_dssp             SCEEEEETTTTEEEEEECCCSSCEEEEEEETTEEEEEETTSEEEEEESSSCCEEEEEECCSSCEEEEEECSSCEEEEETT
T ss_pred             ccccccccccccceecccccceeEeeeecccccccccccceeEEEeecccccceeeeecccccceeeccccceeeeecCC
Confidence            999999987654433322111000                000  000 00      00001122334456788999999


Q ss_pred             CcEEEEEcccceeeeeecCCccceEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCeeEEEeecccccEEEEEEcCCCCeEE
Q 021247          180 GTISVFDVTRAKFLHHLEGHFMPVRSLVYSPVDPRVLFSASDDTHVHMYDAEGKSLVTAMSGHASWVLSVDASPDGAAIT  259 (315)
Q Consensus       180 g~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~  259 (315)
                      +.+++||+...+.+..+.+|...+..+.+   ++.++++++.|+.|++||.+.++.+....+|...+.++.+++  ++|+
T Consensus       157 ~~i~~~d~~~~~~~~~~~~~~~~~~~~~~---~~~~l~s~~~dg~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~--~~l~  231 (342)
T d2ovrb2         157 FMVKVWDPETETCLHTLQGHTNRVYSLQF---DGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGMELKD--NILV  231 (342)
T ss_dssp             SCEEEEEGGGTEEEEEECCCSSCEEEEEE---CSSEEEEEETTSCEEEEETTTCCEEEEECCCCSCEEEEEEET--TEEE
T ss_pred             CeEEEeecccceeeEEEcCcccccccccC---CCCEEEEEeCCCeEEEeecccceeeeEecccccceeEEecCC--CEEE
Confidence            99999999999999999999887777665   456899999999999999999999999999999999887765  5999


Q ss_pred             EEeCCCcEEEEecCccceehccc---ccccceEEEEEeeCCCEEEEEeCCCcEEEeec
Q 021247          260 TGSSDRTVKLWDLNMRAAMQSMT---NHTDQVWGVSFRPLGGRVVSVSDDKSISLYEY  314 (315)
Q Consensus       260 s~~~d~~i~iwd~~~~~~~~~~~---~~~~~v~~~~~s~~~~~l~s~~~d~~i~i~~~  314 (315)
                      +++.|+.|++||+...+....+.   .|...+.++.++  +.++++++.||+|+|||+
T Consensus       232 s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~s~s~Dg~i~iwd~  287 (342)
T d2ovrb2         232 SGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFN--KNFVITSSDDGTVKLWDL  287 (342)
T ss_dssp             EEETTSCEEEEETTTCCEEEEECSTTSCSSCEEEEEEC--SSEEEEEETTSEEEEEET
T ss_pred             EEcCCCEEEEEecccccccccccccceeeeceeecccC--CCeeEEEcCCCEEEEEEC
Confidence            99999999999998876655443   455667766665  469999999999999996

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=6e-32  Score=225.17  Aligned_cols=242  Identities=21%  Similarity=0.328  Sum_probs=197.3

Q ss_pred             eeccccccce-EEEEeCCCCCEEEEeeCCCeEEEEECCCCceeEEeeCCcccEEEEEECCCCCeEEEEecCCCeEEEEec
Q 021247           54 RTNTGHCLGV-VSVAAHPSGIIAASASLDSFVRVFDVDTNASIATLEASPSEVWQMQFDPKGTTLAVAGGGSASVKLWDT  132 (315)
Q Consensus        54 ~~~~~h~~~v-~~~~~~~~g~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~~d~  132 (315)
                      ..+.||...| .++++  +|++|++|+.|++|++||+.+++.+.++..|.++|.+++|+|++  ++++++.|++|++|+.
T Consensus         6 ~tL~GH~~~vitc~~~--~~~~l~tgs~Dg~i~vWd~~~~~~~~~l~~H~~~V~~l~~s~~~--~l~s~s~D~~i~iw~~   81 (355)
T d1nexb2           6 TTLRGHMTSVITCLQF--EDNYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAHGG--ILVSGSTDRTVRVWDI   81 (355)
T ss_dssp             EEEECCSSSCEEEEEE--ETTEEEEEETTTEEEEEETTTTEEEEEEECCSSCEEEEEEETTT--EEEEEETTCCEEEEET
T ss_pred             EEECCcCCCcEEEEEE--CCCEEEEEeCCCeEEEEECCCCcEEEEEECCCCCEEEEEEcCCC--EEEEEecccccccccc
Confidence            3567998886 55554  68899999999999999999999999999999999999999854  4678899999999999


Q ss_pred             CCcceeeeecCCCCCCCCCCccCCCCcceEEEEECCCCCEEEEecCCCcEEEEEcccceeeeee----------------
Q 021247          133 ATWNLIATLSIPRPEGLKPTDKSSSKKFVLSVAWSPDGRRIACGSMDGTISVFDVTRAKFLHHL----------------  196 (315)
Q Consensus       133 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~s~dg~i~i~d~~~~~~~~~~----------------  196 (315)
                      ...+.........           .........+.+++..+++++.|+.|++||+.+.......                
T Consensus        82 ~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~  150 (355)
T d1nexb2          82 KKGCCTHVFEGHN-----------STVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEEN  150 (355)
T ss_dssp             TTTEEEEEECCCS-----------SCEEEEEEEEETTEEEEEEEETTSEEEEEECCC-----------CCCEEESCTTTC
T ss_pred             ccccccccccccc-----------ccccccccccccccceeeeecCCCcEEEEEccCCceeccccccceeccceeccccc
Confidence            8876665443211           1223556777889999999999999999998765433211                


Q ss_pred             -------cCCccceEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCeeEEEeecccccEEEEEEcCCCCeEEEEeCCCcEEE
Q 021247          197 -------EGHFMPVRSLVYSPVDPRVLFSASDDTHVHMYDAEGKSLVTAMSGHASWVLSVDASPDGAAITTGSSDRTVKL  269 (315)
Q Consensus       197 -------~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~d~~i~i  269 (315)
                             ..|...+....  + ++.+++++..|+.+++||.+.++.+....++...+.++.++|++..+++++.|+.|++
T Consensus       151 ~~~~~~~~~~~~~v~~~~--~-~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~i  227 (355)
T d1nexb2         151 PYFVGVLRGHMASVRTVS--G-HGNIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCISASMDTTIRI  227 (355)
T ss_dssp             TTEEEEEECCSSCEEEEE--E-ETTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEETTTTEEEEEETTSCEEE
T ss_pred             cceeeeeeeccccccccc--c-ccceeeeecccceeeeeecccccceeeeeccccccccccccccceeeecccccceEEe
Confidence                   12223333322  2 4578999999999999999999988888889999999999999999999999999999


Q ss_pred             EecCccceehcccccccceEEEEEeeCCCEEEEEeCCCcEEEeecC
Q 021247          270 WDLNMRAAMQSMTNHTDQVWGVSFRPLGGRVVSVSDDKSISLYEYS  315 (315)
Q Consensus       270 wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~i~i~~~~  315 (315)
                      ||++++..+..+.+|...|.++++++  ++|++++.||+|++||+.
T Consensus       228 ~d~~~~~~~~~~~~h~~~v~~~~~~~--~~l~~~~~dg~i~iwd~~  271 (355)
T d1nexb2         228 WDLENGELMYTLQGHTALVGLLRLSD--KFLVSAAADGSIRGWDAN  271 (355)
T ss_dssp             EETTTCCEEEEECCCSSCCCEEEECS--SEEEEECTTSEEEEEETT
T ss_pred             eecccccccccccccccccccccccc--ceeeeeeccccccccccc
Confidence            99999999999999999999999875  599999999999999963

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=1.6e-32  Score=233.54  Aligned_cols=253  Identities=15%  Similarity=0.191  Sum_probs=180.5

Q ss_pred             eccccccceEEEEeCCCCCEEEEeeCCCeEEEEECCCCce------eEEeeCCcccE------EEEEECCCCCeEEEEec
Q 021247           55 TNTGHCLGVVSVAAHPSGIIAASASLDSFVRVFDVDTNAS------IATLEASPSEV------WQMQFDPKGTTLAVAGG  122 (315)
Q Consensus        55 ~~~~h~~~v~~~~~~~~g~~l~s~~~d~~i~~w~~~~~~~------~~~~~~~~~~v------~~~~~~~~~~~~~~~~~  122 (315)
                      ..++|...|.++++++  ++++|++.|++|++||..+...      ......+...+      ..+..++....++++++
T Consensus         9 ~~~~H~~~I~~v~~~~--~~l~S~S~D~~iriWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~   86 (393)
T d1sq9a_           9 AGKAHDADIFSVSACN--SFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQAIERDAFELCLVATTS   86 (393)
T ss_dssp             ESSCSSSCEEEEEECS--SEEEEEETTSEEEEEESBCCTTCCGGGGEEEEECCTTCEEEEEEEEEEETTTEEEEEEEEEE
T ss_pred             cCCcccCccEEEEEeC--CEEEEEECCCeEEEEECCCCCCCcccceeEeeeeccCCceEeeeEeeeccCCCCCcEEEEEe
Confidence            3468999999999865  6899999999999999765431      11222222221      12222222334667888


Q ss_pred             CCCeEEEEecCCcceeeeecCCCCCCCCCCccCCCCcceEEEEECCC-----CCEEEEecCCCcEEEEEcccce------
Q 021247          123 GSASVKLWDTATWNLIATLSIPRPEGLKPTDKSSSKKFVLSVAWSPD-----GRRIACGSMDGTISVFDVTRAK------  191 (315)
Q Consensus       123 ~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-----~~~l~~~s~dg~i~i~d~~~~~------  191 (315)
                      .|+.|++|++...............   ......+...+..++|.++     +.++++++.||.+++||+....      
T Consensus        87 ~dg~v~~w~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~vw~~~~~~~~~~~~  163 (393)
T d1sq9a_          87 FSGDLLFYRITREDETKKVIFEKLD---LLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSL  163 (393)
T ss_dssp             TTSCEEEEEEEECTTTCCEEEEEEC---CSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEESSSSHHHHT
T ss_pred             CCCcEEEEEccCCCceeeeeccccc---eeeeccCCCceEEEEEecCCCcccccEEEEEcCCCcEEEEEeecCCccccee
Confidence            9999999997654332211110000   0011122333566777664     4688999999999999974221      


Q ss_pred             ------------eeeeecCCccceEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCeeEEE------eecccccEEEEEEcC
Q 021247          192 ------------FLHHLEGHFMPVRSLVYSPVDPRVLFSASDDTHVHMYDAEGKSLVTA------MSGHASWVLSVDASP  253 (315)
Q Consensus       192 ------------~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~------~~~~~~~i~~~~~~~  253 (315)
                                  .......+...+.+++|+|+ + ++++|+.|++|++||+++++.+..      +.+|..+|++++|+|
T Consensus       164 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~d-g-~lasgs~Dg~i~iwd~~~~~~~~~~~~~~~l~~h~~~V~~l~~sp  241 (393)
T d1sq9a_         164 TLNWSPTLELQGTVESPMTPSQFATSVDISER-G-LIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSP  241 (393)
T ss_dssp             TTCCCCEEEEEEEECCSSSSCCCCCEEEECTT-S-EEEEECTTSEEEEEETTTTEEEEEEECCC---CCCCCEEEEEECS
T ss_pred             eeeeccceecccceecccCCCCcEEEEEECCC-C-EEEEEeCCCcEEEEeecccccccccccccccccccceEEEccccc
Confidence                        01112234556889999984 3 889999999999999998876654      346899999999999


Q ss_pred             CCCeEEEEeCCCc---EEEEecCccceehcc-------------cccccceEEEEEeeCCCEEEEEeCCCcEEEeec
Q 021247          254 DGAAITTGSSDRT---VKLWDLNMRAAMQSM-------------TNHTDQVWGVSFRPLGGRVVSVSDDKSISLYEY  314 (315)
Q Consensus       254 ~~~~l~s~~~d~~---i~iwd~~~~~~~~~~-------------~~~~~~v~~~~~s~~~~~l~s~~~d~~i~i~~~  314 (315)
                      ++++|++|+.|++   |++||+++++.+..+             .+|.+.|++++|+|++++|+++|.|++|+|||+
T Consensus       242 dg~~l~sgs~D~t~~~i~lwd~~~g~~~~~l~~~~~~~~~~~~~~gH~~~V~~l~fspd~~~l~S~s~D~~v~vWd~  318 (393)
T d1sq9a_         242 QGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWDV  318 (393)
T ss_dssp             STTEEEEEEEETTEEEEEEEETTTCCEEEEECBC--------CCBSBSSCEEEEEECSSSSEEEEEETTSEEEEEET
T ss_pred             ccceeeeecCCCCcceeeecccccceeeeeeccccccccceeeeecccCceeeeccCCCCCeeEEECCCCEEEEEEC
Confidence            9999999999875   999999987765554             479999999999999999999999999999996

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=2e-30  Score=214.42  Aligned_cols=252  Identities=14%  Similarity=0.081  Sum_probs=185.6

Q ss_pred             cceeeccccccceEEEEeCCCCCEEEEeeCCCeEEEEECCCCcee---EEeeCCcccEEEEEECCCCCeEEEEecCCCeE
Q 021247           51 QLERTNTGHCLGVVSVAAHPSGIIAASASLDSFVRVFDVDTNASI---ATLEASPSEVWQMQFDPKGTTLAVAGGGSASV  127 (315)
Q Consensus        51 ~~~~~~~~h~~~v~~~~~~~~g~~l~s~~~d~~i~~w~~~~~~~~---~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i  127 (315)
                      ++.....+|.+.|++|+|+|++.+|++++.|++|++||+..+...   .....|..+|.+++|+|++..++++|+.|++|
T Consensus         2 ~~v~~~~~h~d~I~~l~fsp~~~~L~s~s~Dg~v~iwd~~~~~~~~~~~~~~~h~~~V~~v~f~~~~~~~l~sg~~d~~v   81 (342)
T d1yfqa_           2 QIVQIEQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQIYVGTVQGEI   81 (342)
T ss_dssp             EEEECSSCCSSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEESSSEEEEEEETTSCE
T ss_pred             CeEEcCCCCCCCEEEEEEeCCCCEEEEEECCCeEEEEEccCCCcceEEEEecCCCCCEEEEEEeCCCCCEEEEcccccce
Confidence            445566789999999999999999999999999999999765432   23335888999999999888788899999999


Q ss_pred             EEEecCCcceeeeecCCCCCCCCCCccCCCCcceEEEEECCCCCEEEEecCCCcEEEEEcccceee----eeecCC--cc
Q 021247          128 KLWDTATWNLIATLSIPRPEGLKPTDKSSSKKFVLSVAWSPDGRRIACGSMDGTISVFDVTRAKFL----HHLEGH--FM  201 (315)
Q Consensus       128 ~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~s~dg~i~i~d~~~~~~~----~~~~~~--~~  201 (315)
                      ++|+.............            +........+.++...+++++.++.+++||++.....    .....+  ..
T Consensus        82 ~~w~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~wd~~~~~~~~~~~~~~~~~~~~~  149 (342)
T d1yfqa_          82 LKVDLIGSPSFQALTNN------------EANLGICRICKYGDDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTKV  149 (342)
T ss_dssp             EEECSSSSSSEEECBSC------------CCCSCEEEEEEETTTEEEEEETTSEEEEECHHHHTTBCEEEEESCSSSSSS
T ss_pred             eeeeccccccccccccc------------ccccccccccccccccccccccccccceeeccccccceeeecccccccccc
Confidence            99999876555443221            1112345556677889999999999999998654322    222222  22


Q ss_pred             ceEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCeeE---EEeecccccEEEEEEcC-CCCeEEEEeCCCcEEEEecCccce
Q 021247          202 PVRSLVYSPVDPRVLFSASDDTHVHMYDAEGKSLV---TAMSGHASWVLSVDASP-DGAAITTGSSDRTVKLWDLNMRAA  277 (315)
Q Consensus       202 ~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~---~~~~~~~~~i~~~~~~~-~~~~l~s~~~d~~i~iwd~~~~~~  277 (315)
                      ....+.+.+ ....+++++.|+.|++||+......   .....+...+....+.+ ++..+++++.||.+.+|++.....
T Consensus       150 ~~~~~~~~~-~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~v~~~~~~~~  228 (342)
T d1yfqa_         150 KNKIFTMDT-NSSRLIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGD  228 (342)
T ss_dssp             CCCEEEEEE-CSSEEEEEESTTEEEEEESSCCTTCCCEEEECSCSSCEEEEEECSGGGCEEEEEETTSEEEEEECCTTCC
T ss_pred             eeeeeeeec-cCCceeeecCCCcEEEEecccCcccceeeeecccccceeeeEeecCCCCEEEeecCCCeEEEEEecCCcc
Confidence            233444554 5668999999999999998755322   22333444555555544 677899999999999998764322


Q ss_pred             e---------------hcccccccceEEEEEeeCCCEEEEEeCCCcEEEeecC
Q 021247          278 M---------------QSMTNHTDQVWGVSFRPLGGRVVSVSDDKSISLYEYS  315 (315)
Q Consensus       278 ~---------------~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~i~i~~~~  315 (315)
                      .               .....|...+++++|+|++++|++|+.||+|+|||+.
T Consensus       229 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~lasg~~Dg~v~vWD~~  281 (342)
T d1yfqa_         229 DYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQ  281 (342)
T ss_dssp             STTCTTCEEEECCCCCTTCCSSCCCEEEEEECTTTCCEEEEETTSCEEEEETT
T ss_pred             eeeccccceeeeeeeccCCCcccccceeEEecCCccEEEEECCCCEEEEEECC
Confidence            1               1123466689999999999999999999999999973

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.98  E-value=8.9e-29  Score=200.32  Aligned_cols=234  Identities=21%  Similarity=0.351  Sum_probs=193.5

Q ss_pred             eeccccccceEEEEeCCCCCEEEEeeCCCeEEEEECCCCceeEEeeCCcccEEEEEECCCCCeEEEEecCCCeEEEEecC
Q 021247           54 RTNTGHCLGVVSVAAHPSGIIAASASLDSFVRVFDVDTNASIATLEASPSEVWQMQFDPKGTTLAVAGGGSASVKLWDTA  133 (315)
Q Consensus        54 ~~~~~h~~~v~~~~~~~~g~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~~d~~  133 (315)
                      ....+|..+|.|+++  +|++|+||+.||+|++||+++++++.++..|..+|.+++|++  + ++++|+.|+.|++|++.
T Consensus         9 ~~~~~~~~~V~c~~~--d~~~l~sgs~Dg~i~vWd~~~~~~~~~l~~H~~~V~~v~~~~--~-~l~s~s~D~~i~~~~~~   83 (293)
T d1p22a2           9 HCRSETSKGVYCLQY--DDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQYDE--R-VIITGSSDSTVRVWDVN   83 (293)
T ss_dssp             ECCCSSCCCEEEEEC--CSSEEEEEESSSCEEEEESSSCCEEEEECCCSSCEEEEECCS--S-EEEEEETTSCEEEEESS
T ss_pred             eccCCCCCCEEEEEE--cCCEEEEEeCCCeEEEEECCCCcEEEEEecCCCCEeeeeccc--c-eeecccccccccccccc
Confidence            345678889998775  789999999999999999999999999999999999998854  4 56789999999999998


Q ss_pred             CcceeeeecCCCCCCCCCCccCCCCcceEEEEECCCCCEEEEecCCCcEEEEEccccee---eeeecCCccceEEEEEcC
Q 021247          134 TWNLIATLSIPRPEGLKPTDKSSSKKFVLSVAWSPDGRRIACGSMDGTISVFDVTRAKF---LHHLEGHFMPVRSLVYSP  210 (315)
Q Consensus       134 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~s~dg~i~i~d~~~~~~---~~~~~~~~~~v~~~~~~~  210 (315)
                      .+..........               .....+.+....++++..++.+.+||......   ...+..|...+..+.+.+
T Consensus        84 ~~~~~~~~~~~~---------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~  148 (293)
T d1p22a2          84 TGEMLNTLIHHC---------------EAVLHLRFNNGMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFDD  148 (293)
T ss_dssp             SCCEEEEECCCC---------------SCEEEEECCTTEEEEEETTSCEEEEECSSSSCCEEEEEECCCSSCEEEEEEET
T ss_pred             cccccccccccc---------------cccccccccccceeecccccceeEeeccccccccccccccccccccccceecc
Confidence            876655443211               12334556677889999999999999876543   445567888888877764


Q ss_pred             CCCcEEEEEeCCCeEEEEeCCCCeeEEEeecccccEEEEEEcCCCCeEEEEeCCCcEEEEecCccceehcccccccceEE
Q 021247          211 VDPRVLFSASDDTHVHMYDAEGKSLVTAMSGHASWVLSVDASPDGAAITTGSSDRTVKLWDLNMRAAMQSMTNHTDQVWG  290 (315)
Q Consensus       211 ~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~  290 (315)
                         ..+++++.|+.+++||.+..+.+..+.++...+..+.++  +..+++++.|++|++||++....+....+|...+..
T Consensus       149 ---~~~~~~s~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~  223 (293)
T d1p22a2         149 ---KYIVSASGDRTIKVWNTSTCEFVRTLNGHKRGIACLQYR--DRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRC  223 (293)
T ss_dssp             ---TEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEEE--TTEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEE
T ss_pred             ---cccccccCCCceeeecCCCCcEEEEEcccccccccccCC--CCeEEEecCCCEEEEEecccceeeeeecccceeeee
Confidence               478899999999999999999999999998888887775  468999999999999999999888888888887764


Q ss_pred             EEEeeCCCEEEEEeCCCcEEEeec
Q 021247          291 VSFRPLGGRVVSVSDDKSISLYEY  314 (315)
Q Consensus       291 ~~~s~~~~~l~s~~~d~~i~i~~~  314 (315)
                        +++++.+|++++.||+|+|||+
T Consensus       224 --~~~~~~~l~sg~~dg~i~iwd~  245 (293)
T d1p22a2         224 --IRFDNKRIVSGAYDGKIKVWDL  245 (293)
T ss_dssp             --EECCSSEEEEEETTSCEEEEEH
T ss_pred             --ccccceEEEEEcCCCEEEEEEC
Confidence              5667889999999999999985

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.97  E-value=1.5e-29  Score=205.75  Aligned_cols=234  Identities=15%  Similarity=0.196  Sum_probs=186.3

Q ss_pred             hhccccceEEEEEeecCCCCCcEEEEeeCCCcEEEEcCCCCcceeeccccccceEEEEeCCCCCEEEEeeCCCeEEEEEC
Q 021247           10 ENAHEESVWAVTWVPATETRPALLLTGSLDETVKLWRPDDMQLERTNTGHCLGVVSVAAHPSGIIAASASLDSFVRVFDV   89 (315)
Q Consensus        10 ~~~h~~~v~~v~~~~~~~~~~~~l~sgs~d~~v~~w~~~~~~~~~~~~~h~~~v~~~~~~~~g~~l~s~~~d~~i~~w~~   89 (315)
                      ..+|+..|.+++|.+..     .+++++.|++|++|+....+       ....+..+.+++++..++++ .++.+.+|+.
T Consensus        42 ~~~h~~~V~~~~~~~~~-----~~~s~s~D~~v~~w~~~~~~-------~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~  108 (287)
T d1pgua2          42 HQDHSNLIVSLDNSKAQ-----EYSSISWDDTLKVNGITKHE-------FGSQPKVASANNDGFTAVLT-NDDDLLILQS  108 (287)
T ss_dssp             ECCCCSCEEEEECCSTT-----CCEEEETTTEEEETTEEEEE-------CSSCEEEEEECSSSEEEEEE-TTSEEEEEET
T ss_pred             CCCCCCCEEEEEecCCC-----eEEEEeeccccccccccccc-------cccceeeeeeccCCceEEEe-ecccceeeec
Confidence            46899999999998643     48999999999999864322       12346778888988777765 4667899999


Q ss_pred             CCCceeEEeeCCcccEEEEEECCCCCeEEEEecCCCeEEEEecCCcceeeeecCCCCCCCCCCccCCCCcceEEEEECCC
Q 021247           90 DTNASIATLEASPSEVWQMQFDPKGTTLAVAGGGSASVKLWDTATWNLIATLSIPRPEGLKPTDKSSSKKFVLSVAWSPD  169 (315)
Q Consensus        90 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~  169 (315)
                      .++..+..+.... ++  .+++|++..+++++..++.+++|++...+.......            .+...+++++|+|+
T Consensus       109 ~~~~~~~~~~~~~-~~--~~~~~~~~~~~v~~~~~~~v~~~~~~~~~~~~~~~~------------~~~~~v~~~~~s~~  173 (287)
T d1pgua2         109 FTGDIIKSVRLNS-PG--SAVSLSQNYVAVGLEEGNTIQVFKLSDLEVSFDLKT------------PLRAKPSYISISPS  173 (287)
T ss_dssp             TTCCEEEEEECSS-CE--EEEEECSSEEEEEETTTSCEEEEETTEEEEEEECSS------------CCSSCEEEEEECTT
T ss_pred             cceeeeeeccccc-ee--eeeeccCcceeeeccccceeeeeeccccceeeeeee------------ccCCceeEEEeccC
Confidence            9988887776543 33  345667777777766667899999876554433321            23345899999999


Q ss_pred             CCEEEEecCCCcEEEEEcccceeee-eecCCccceEEEEEcCC---------CCcEEEEEeCCCeEEEEeCCC-CeeEEE
Q 021247          170 GRRIACGSMDGTISVFDVTRAKFLH-HLEGHFMPVRSLVYSPV---------DPRVLFSASDDTHVHMYDAEG-KSLVTA  238 (315)
Q Consensus       170 ~~~l~~~s~dg~i~i~d~~~~~~~~-~~~~~~~~v~~~~~~~~---------~~~~l~s~~~d~~i~~wd~~~-~~~~~~  238 (315)
                      +.+|++|+.||.|++||+.+++... .+..|..+|.+++|+|.         +..++++|+.|++|++||++. .+.+..
T Consensus       174 ~~~l~~g~~dg~i~i~d~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~~~~l~sgs~D~~i~iw~~~~~~~~~~~  253 (287)
T d1pgua2         174 ETYIAAGDVMGKILLYDLQSREVKTSRWAFRTSKINAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPMKIIKA  253 (287)
T ss_dssp             SSEEEEEETTSCEEEEETTTTEEEECCSCCCSSCEEEEEECCCC------CCSCCEEEEEETTSCEEEEESSCTTCCEEE
T ss_pred             ccccccccccccccceeecccccccccccccccccceeeecccccccccccCCCCeeEeecCCCeEEEEECCCCCeEEEE
Confidence            9999999999999999998887654 46789999999999873         356899999999999999865 566777


Q ss_pred             eecccccEEEEEEcCCCCeEEEEeCCCcEEEEec
Q 021247          239 MSGHASWVLSVDASPDGAAITTGSSDRTVKLWDL  272 (315)
Q Consensus       239 ~~~~~~~i~~~~~~~~~~~l~s~~~d~~i~iwd~  272 (315)
                      +.+|...|+++.|+|++ .|+|++.|++|++|++
T Consensus       254 ~~~h~~~V~~v~~~~~~-~l~s~g~D~~v~iW~i  286 (287)
T d1pgua2         254 LNAHKDGVNNLLWETPS-TLVSSGADACIKRWNV  286 (287)
T ss_dssp             TTSSTTCEEEEEEEETT-EEEEEETTSCEEEEEE
T ss_pred             eCCCCCCeEEEEECCCC-EEEEEECCCeEEEEEE
Confidence            78999999999999986 5899999999999985

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=99.97  E-value=3.3e-29  Score=209.49  Aligned_cols=270  Identities=14%  Similarity=0.116  Sum_probs=199.8

Q ss_pred             EEEEEee-cCCCCCcEEEEeeCCCcEEEEcCCCCcceeeccccccceEEEEeCCCCCEEEEeeCCC--eEEEEECCCCce
Q 021247           18 WAVTWVP-ATETRPALLLTGSLDETVKLWRPDDMQLERTNTGHCLGVVSVAAHPSGIIAASASLDS--FVRVFDVDTNAS   94 (315)
Q Consensus        18 ~~v~~~~-~~~~~~~~l~sgs~d~~v~~w~~~~~~~~~~~~~h~~~v~~~~~~~~g~~l~s~~~d~--~i~~w~~~~~~~   94 (315)
                      +.-.|+| +++    ++++++ +|.|.+|+.......+.  +|...|.+++|+|+|+.|++++.+.  .|++||.++++.
T Consensus         6 ~~~~fSP~dG~----~~a~~~-~g~v~v~d~~~~~~~~~--~~~~~v~~~~~spDg~~l~~~~~~~g~~v~v~d~~~~~~   78 (360)
T d1k32a3           6 FAEDFSPLDGD----LIAFVS-RGQAFIQDVSGTYVLKV--PEPLRIRYVRRGGDTKVAFIHGTREGDFLGIYDYRTGKA   78 (360)
T ss_dssp             GEEEEEECGGG----CEEEEE-TTEEEEECTTSSBEEEC--SCCSCEEEEEECSSSEEEEEEEETTEEEEEEEETTTCCE
T ss_pred             hcccccCCCCC----EEEEEE-CCeEEEEECCCCcEEEc--cCCCCEEEEEECCCCCEEEEEEcCCCCEEEEEECCCCcE
Confidence            3456999 665    466655 68999999987766543  6889999999999999988776553  799999988765


Q ss_pred             eEEeeCCcccEEEEEECCCCCeEEEEecCCCeEEEEecCCcceeeeecCCCCCCCCCCccCCCCcceEEEEECCCCCEEE
Q 021247           95 IATLEASPSEVWQMQFDPKGTTLAVAGGGSASVKLWDTATWNLIATLSIPRPEGLKPTDKSSSKKFVLSVAWSPDGRRIA  174 (315)
Q Consensus        95 ~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~  174 (315)
                       ..+..+...+..++|+|+++++ ++++.++.+++|+..+++....+..+             ...+.+++|+|+|++|+
T Consensus        79 -~~~~~~~~~v~~~~~spdg~~l-~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~spdg~~la  143 (360)
T d1k32a3          79 -EKFEENLGNVFAMGVDRNGKFA-VVANDRFEIMTVDLETGKPTVIERSR-------------EAMITDFTISDNSRFIA  143 (360)
T ss_dssp             -EECCCCCCSEEEEEECTTSSEE-EEEETTSEEEEEETTTCCEEEEEECS-------------SSCCCCEEECTTSCEEE
T ss_pred             -EEeeCCCceEEeeeeccccccc-ceeccccccccccccccceeeeeecc-------------cccccchhhccceeeee
Confidence             4566788899999999999976 56778999999999988776655332             23367899999999998


Q ss_pred             Ee----------cCCCcEEEEEcccceeeeeecCCccceEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCee-------EE
Q 021247          175 CG----------SMDGTISVFDVTRAKFLHHLEGHFMPVRSLVYSPVDPRVLFSASDDTHVHMYDAEGKSL-------VT  237 (315)
Q Consensus       175 ~~----------s~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~-------~~  237 (315)
                      .+          ..++.+++||+.+++... +..+...+..+.|+| +++.|++++.++.+.+||......       ..
T Consensus       144 ~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~-~~~~~~~~~~~~~sp-dg~~l~~~s~~~~~~~~d~~~~~~~~~~~~~~~  221 (360)
T d1k32a3         144 YGFPLKHGETDGYVMQAIHVYDMEGRKIFA-ATTENSHDYAPAFDA-DSKNLYYLSYRSLDPSPDRVVLNFSFEVVSKPF  221 (360)
T ss_dssp             EEEEECSSTTCSCCEEEEEEEETTTTEEEE-CSCSSSBEEEEEECT-TSCEEEEEESCCCCCEECSSSSCEECCSCBEEE
T ss_pred             eeccccccceeeccccceeeeccccCceee-ecccccccccccccC-CCCEEEEEeCCCceEcccccccceeeccccceE
Confidence            54          345579999998876544 444667788899999 678899999999999998543211       11


Q ss_pred             Eeec------------------------------------ccccEEEEEEcCC-------------CCeEEEEeCCCcEE
Q 021247          238 AMSG------------------------------------HASWVLSVDASPD-------------GAAITTGSSDRTVK  268 (315)
Q Consensus       238 ~~~~------------------------------------~~~~i~~~~~~~~-------------~~~l~s~~~d~~i~  268 (315)
                      ....                                    ..+....+...++             +.++++++.++.|+
T Consensus       222 ~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~  301 (360)
T d1k32a3         222 VIPLIPGSPNPTKLVPRSMTSEAGEYDLNDMYKRSSPINVDPGDYRMIIPLESSILIYSVPVHGEFAAYYQGAPEKGVLL  301 (360)
T ss_dssp             EEESSTTCCCGGGCCCGGGSCCCCCCCCTTGGGGCEECSCCCBCEEEEEECSSEEEEEECCCCCSHHHHHHCCCCCEEEE
T ss_pred             EEecccCccccceECCCcCcccccceeecccccceeecccCcCceeEeeecCCCceEEEEEecCCCeeEEEecCCCCEEE
Confidence            1000                                    0111122222222             12456677788999


Q ss_pred             EEecCccceehcccccccceEEEEEeeCCCEEEEEeCCCcEEEeecC
Q 021247          269 LWDLNMRAAMQSMTNHTDQVWGVSFRPLGGRVVSVSDDKSISLYEYS  315 (315)
Q Consensus       269 iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~i~i~~~~  315 (315)
                      +||+..++.    ..|.+.|.+++|||||++|++++.||+|++||+.
T Consensus       302 ~~d~~~~~~----~~~~~~v~~~~~SpDG~~l~~~~~Dg~i~v~d~~  344 (360)
T d1k32a3         302 KYDVKTRKV----TEVKNNLTDLRLSADRKTVMVRKDDGKIYTFPLE  344 (360)
T ss_dssp             EEETTTCCE----EEEEEEEEEEEECTTSCEEEEEETTSCEEEEESS
T ss_pred             EEECCCCeE----EEecCCcCEEEECCCCCEEEEEECCCeEEEEECC
Confidence            999987653    2455679999999999999999999999999963

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

Probab=99.97  E-value=5.9e-27  Score=190.98  Aligned_cols=264  Identities=18%  Similarity=0.248  Sum_probs=211.7

Q ss_pred             EEEeeCCCcEEEEcCCCCcceeeccccccceEEEEeCCCCCEE-EEeeCCCeEEEEECCCCceeEEeeCCcccEEEEEEC
Q 021247           33 LLTGSLDETVKLWRPDDMQLERTNTGHCLGVVSVAAHPSGIIA-ASASLDSFVRVFDVDTNASIATLEASPSEVWQMQFD  111 (315)
Q Consensus        33 l~sgs~d~~v~~w~~~~~~~~~~~~~h~~~v~~~~~~~~g~~l-~s~~~d~~i~~w~~~~~~~~~~~~~~~~~v~~~~~~  111 (315)
                      .++++.|++|.+||.+++++.+.++.. ..+..++++|+|+++ ++++.++.|++||+.+++.+..+..+. ....+.++
T Consensus         5 yV~~~~~~~v~v~D~~t~~~~~~i~~g-~~p~~va~spdG~~l~v~~~~~~~i~v~d~~t~~~~~~~~~~~-~~~~~~~~   82 (301)
T d1l0qa2           5 YIANSESDNISVIDVTSNKVTATIPVG-SNPMGAVISPDGTKVYVANAHSNDVSIIDTATNNVIATVPAGS-SPQGVAVS   82 (301)
T ss_dssp             EEEETTTTEEEEEETTTTEEEEEEECS-SSEEEEEECTTSSEEEEEEGGGTEEEEEETTTTEEEEEEECSS-SEEEEEEC
T ss_pred             EEEECCCCEEEEEECCCCeEEEEEECC-CCceEEEEeCCCCEEEEEECCCCEEEEEECCCCceeeeeeccc-cccccccc
Confidence            456788999999999999988876543 456889999999976 577789999999999999988887665 45789999


Q ss_pred             CCCCeEEEEecCCCeEEEEecCCcceeeeecCCCCCCCCCCccCCCCcceEEEEECCCCCEEE-EecCCCcEEEEEcccc
Q 021247          112 PKGTTLAVAGGGSASVKLWDTATWNLIATLSIPRPEGLKPTDKSSSKKFVLSVAWSPDGRRIA-CGSMDGTISVFDVTRA  190 (315)
Q Consensus       112 ~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~-~~s~dg~i~i~d~~~~  190 (315)
                      +++..+++++..+..+.+|+..+++....+...              ....+++++|+++.++ ++..++.+.+|+..+.
T Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------~~~~~~~~~~dg~~~~~~~~~~~~~~~~~~~~~  148 (301)
T d1l0qa2          83 PDGKQVYVTNMASSTLSVIDTTSNTVAGTVKTG--------------KSPLGLALSPDGKKLYVTNNGDKTVSVINTVTK  148 (301)
T ss_dssp             TTSSEEEEEETTTTEEEEEETTTTEEEEEEECS--------------SSEEEEEECTTSSEEEEEETTTTEEEEEETTTT
T ss_pred             cccccccccccccceeeecccccceeeeecccc--------------ccceEEEeecCCCeeeeeeccccceeeeecccc
Confidence            999999888889999999999988777665432              2267899999998775 5667888999999998


Q ss_pred             eeeeeecCCccceEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCeeEEEeecccccEEEEEEcCCCCeEEEEeC---CCcE
Q 021247          191 KFLHHLEGHFMPVRSLVYSPVDPRVLFSASDDTHVHMYDAEGKSLVTAMSGHASWVLSVDASPDGAAITTGSS---DRTV  267 (315)
Q Consensus       191 ~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~---d~~i  267 (315)
                      +....+..+ ..+..+.++|++..++++...++.+.+|+............+ ..+..+++++++..++.++.   ++.|
T Consensus       149 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~g~~~~v~~~~~~~~~v  226 (301)
T d1l0qa2         149 AVINTVSVG-RSPKGIAVTPDGTKVYVANFDSMSISVIDTVTNSVIDTVKVE-AAPSGIAVNPEGTKAYVTNVDKYFNTV  226 (301)
T ss_dssp             EEEEEEECC-SSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECS-SEEEEEEECTTSSEEEEEEECSSCCEE
T ss_pred             ceeeecccC-CCceEEEeeccccceeeecccccccccccccceeeeeccccc-CCcceeeccccccccccccccceeeee
Confidence            888777654 356888999866555556566788889998887766665543 45778999999987766543   4679


Q ss_pred             EEEecCccceehcccccccceEEEEEeeCCCEE-EEEeCCCcEEEeecC
Q 021247          268 KLWDLNMRAAMQSMTNHTDQVWGVSFRPLGGRV-VSVSDDKSISLYEYS  315 (315)
Q Consensus       268 ~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l-~s~~~d~~i~i~~~~  315 (315)
                      ++||+.+++.+.++..+ ..+++++|+|||++| ++++.|++|++||+.
T Consensus       227 ~v~D~~t~~~~~~~~~~-~~~~~va~spdg~~l~va~~~~~~i~v~D~~  274 (301)
T d1l0qa2         227 SMIDTGTNKITARIPVG-PDPAGIAVTPDGKKVYVALSFCNTVSVIDTA  274 (301)
T ss_dssp             EEEETTTTEEEEEEECC-SSEEEEEECTTSSEEEEEETTTTEEEEEETT
T ss_pred             eeeecCCCeEEEEEcCC-CCEEEEEEeCCCCEEEEEECCCCeEEEEECC
Confidence            99999999888777554 568999999999987 678889999999963

>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=99.97  E-value=2.7e-28  Score=209.53  Aligned_cols=282  Identities=12%  Similarity=0.099  Sum_probs=204.8

Q ss_pred             EEEEeeCCCcEEEEcCCCCcceeeccccccceEEEEeCCCCCEEEEeeCCCeEEEEECCCCceeE--Eee---CCcccEE
Q 021247           32 LLLTGSLDETVKLWRPDDMQLERTNTGHCLGVVSVAAHPSGIIAASASLDSFVRVFDVDTNASIA--TLE---ASPSEVW  106 (315)
Q Consensus        32 ~l~sgs~d~~v~~w~~~~~~~~~~~~~h~~~v~~~~~~~~g~~l~s~~~d~~i~~w~~~~~~~~~--~~~---~~~~~v~  106 (315)
                      ++++++.||+|++||..++++.+.++.| ..+..++|+|||+++++++.|+++++||+.+++...  .+.   .+...+.
T Consensus        34 ~~V~~~~dg~v~vwD~~t~~~~~~l~~g-~~~~~vafSPDGk~l~~~~~d~~v~vwd~~t~~~~~~~~i~~~~~~~~~~~  112 (426)
T d1hzua2          34 FSVTLRDAGQIALVDGDSKKIVKVIDTG-YAVHISRMSASGRYLLVIGRDARIDMIDLWAKEPTKVAEIKIGIEARSVES  112 (426)
T ss_dssp             EEEEETTTTEEEEEETTTCSEEEEEECC-SSEEEEEECTTSCEEEEEETTSEEEEEETTSSSCEEEEEEECCSEEEEEEE
T ss_pred             EEEEEcCCCEEEEEECCCCcEEEEEeCC-CCeeEEEECCCCCEEEEEeCCCCEEEEEccCCceeEEEEEeCCCCCcceEE
Confidence            5688889999999999999998888776 458999999999999999999999999999887543  232   2334456


Q ss_pred             EEEECCCCCeEEEEecCCCeEEEEecCCcceeeeecCCCCC---------CC----------------------------
Q 021247          107 QMQFDPKGTTLAVAGGGSASVKLWDTATWNLIATLSIPRPE---------GL----------------------------  149 (315)
Q Consensus       107 ~~~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~---------~~----------------------------  149 (315)
                      +++|+|+|+++++++..++.+.+||..+++.......+...         +.                            
T Consensus       113 s~~~spDG~~l~v~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~d~~~~~~~~~~~~~i~~~~~  192 (426)
T d1hzua2         113 SKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKETGKVLLVNY  192 (426)
T ss_dssp             CCSTTCTTTEEEEEEEESSEEEEEETTTCCEEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEEC
T ss_pred             eeeecCCCCEEEEeecCCCeEEEEcCCccceeEEeeccCCCccceeecCCCceeEEEECCCCCEEEEecCCCCeEEEEEe
Confidence            77788999998888889999999999887665443221100         00                            


Q ss_pred             ---C--CCccCCCCcceEEEEECCCCCEEEEe-cCCCcEEEEEcccceeeeeecCC--ccceEEEEEcCCCCc--EEEEE
Q 021247          150 ---K--PTDKSSSKKFVLSVAWSPDGRRIACG-SMDGTISVFDVTRAKFLHHLEGH--FMPVRSLVYSPVDPR--VLFSA  219 (315)
Q Consensus       150 ---~--~~~~~~~~~~i~~~~~~~~~~~l~~~-s~dg~i~i~d~~~~~~~~~~~~~--~~~v~~~~~~~~~~~--~l~s~  219 (315)
                         .  ..........+..+.++|++++++++ ..+..+.+++..+++........  ..+.....+.+.+..  ..++.
T Consensus       193 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  272 (426)
T d1hzua2         193 KDIDNLTVTSIGAAPFLADGGWDSSHRYFMTAANNSNKVAVIDSKDRRLSALVDVGKTPHPGRGANFVHPKYGPVWSTSH  272 (426)
T ss_dssp             SSSSSCEEEEEECCSSEEEEEECTTSCEEEEEETTCSEEEEEETTTTEEEEEEECSSCCCCSCCEEEEETTTEEEEEEEC
T ss_pred             ccccceeeEEeccCCccEeeeECCCCcEEEeeeecccceeeeecccccEEEEeccCCcccccceeeeecCCCCceEEecc
Confidence               0  00001223345689999999987655 46677999999988877655432  222233333332222  23344


Q ss_pred             eCCCeEEEEeCCC-------CeeEEEeecccccEEEEEEcCCCCeEEE-------EeCCCcEEEEecCccceehcc----
Q 021247          220 SDDTHVHMYDAEG-------KSLVTAMSGHASWVLSVDASPDGAAITT-------GSSDRTVKLWDLNMRAAMQSM----  281 (315)
Q Consensus       220 ~~d~~i~~wd~~~-------~~~~~~~~~~~~~i~~~~~~~~~~~l~s-------~~~d~~i~iwd~~~~~~~~~~----  281 (315)
                      +.|+.+.+|+...       .+....+.+|...+..++++|++++|++       ++.|++|++||+++++...++    
T Consensus       273 ~~d~~v~~~~~~~~~~~~~~~~~~~~l~g~~~~v~~v~~sPdg~~l~v~~~~~~s~~~~~tv~vwd~~t~~~~~~~~~~~  352 (426)
T d1hzua2         273 LGDGSISLIGTDPKNHPQYAWKKVAELQGQGGGSLFIKTHPKSSHLYVDTTFNPDARISQSVAVFDLKNLDAKYQVLPIA  352 (426)
T ss_dssp             TTTCEEEEEECCTTTCTTTBTSEEEEEECSSSCCCCEECCTTCSEEEECCTTCSSHHHHTCEEEEETTCTTSCCEEECHH
T ss_pred             CCCceEEEeeccccccccccceEeEEEecCCCceeEEEcCCCCceEEEeecCCCCcccCCEEEEEECCCCCcCeEEeccc
Confidence            5688898888654       3577788999999999999999999984       566889999999887655443    


Q ss_pred             -----cccccceEEEEEeeCCCEEE-EE----eCCCcEEEeec
Q 021247          282 -----TNHTDQVWGVSFRPLGGRVV-SV----SDDKSISLYEY  314 (315)
Q Consensus       282 -----~~~~~~v~~~~~s~~~~~l~-s~----~~d~~i~i~~~  314 (315)
                           ..|...|.+++|||||++++ ++    +.|++|+|||.
T Consensus       353 ~~~~~~~~~~rv~~~~fSpDGk~i~vs~~~~~~~~~~i~v~D~  395 (426)
T d1hzua2         353 EWADLGEGAKRVVQPEYNKRGDEVWFSVWNGKNDSSALVVVDD  395 (426)
T ss_dssp             HHHCCCSSCCCEEEEEECSSSSEEEEEECCCTTSCCEEEEEET
T ss_pred             hhcccCCCCccEEEEEECCCCCEEEEEEecCCCCCCeEEEEEC
Confidence                 34556799999999999774 43    35789999985

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=99.96  E-value=3.3e-27  Score=197.20  Aligned_cols=255  Identities=10%  Similarity=0.059  Sum_probs=191.1

Q ss_pred             hccccceEEEEEeecCCCCCcEEEEeeCCC--cEEEEcCCCCcceeeccccccceEEEEeCCCCCEEEEeeCCCeEEEEE
Q 021247           11 NAHEESVWAVTWVPATETRPALLLTGSLDE--TVKLWRPDDMQLERTNTGHCLGVVSVAAHPSGIIAASASLDSFVRVFD   88 (315)
Q Consensus        11 ~~h~~~v~~v~~~~~~~~~~~~l~sgs~d~--~v~~w~~~~~~~~~~~~~h~~~v~~~~~~~~g~~l~s~~~d~~i~~w~   88 (315)
                      -+|...|.+++|+|+++    .|++++.+.  .|++|+.++.+. +.+..|...+.+++|+|+|+++++++.++.+++|+
T Consensus        39 ~~~~~~v~~~~~spDg~----~l~~~~~~~g~~v~v~d~~~~~~-~~~~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~~  113 (360)
T d1k32a3          39 VPEPLRIRYVRRGGDTK----VAFIHGTREGDFLGIYDYRTGKA-EKFEENLGNVFAMGVDRNGKFAVVANDRFEIMTVD  113 (360)
T ss_dssp             CSCCSCEEEEEECSSSE----EEEEEEETTEEEEEEEETTTCCE-EECCCCCCSEEEEEECTTSSEEEEEETTSEEEEEE
T ss_pred             ccCCCCEEEEEECCCCC----EEEEEEcCCCCEEEEEECCCCcE-EEeeCCCceEEeeeecccccccceecccccccccc
Confidence            47999999999999886    466555443  799999987665 45567999999999999999999999999999999


Q ss_pred             CCCCceeEEeeCCcccEEEEEECCCCCeEEEEe---------cCCCeEEEEecCCcceeeeecCCCCCCCCCCccCCCCc
Q 021247           89 VDTNASIATLEASPSEVWQMQFDPKGTTLAVAG---------GGSASVKLWDTATWNLIATLSIPRPEGLKPTDKSSSKK  159 (315)
Q Consensus        89 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~---------~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~  159 (315)
                      +.+++....+..+...+..++|+|+++.++++.         ..++.+++||..+++.....              .+..
T Consensus       114 ~~~~~~~~~~~~~~~~~~~~~~spdg~~la~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~--------------~~~~  179 (360)
T d1k32a3         114 LETGKPTVIERSREAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRKIFAAT--------------TENS  179 (360)
T ss_dssp             TTTCCEEEEEECSSSCCCCEEECTTSCEEEEEEEECSSTTCSCCEEEEEEEETTTTEEEECS--------------CSSS
T ss_pred             ccccceeeeeecccccccchhhccceeeeeeeccccccceeeccccceeeeccccCceeeec--------------cccc
Confidence            999998888888888899999999999887543         34467899999876544322              1233


Q ss_pred             ceEEEEECCCCCEEEEecCCCcEEEEEcccceee-------eeecC----------------------------------
Q 021247          160 FVLSVAWSPDGRRIACGSMDGTISVFDVTRAKFL-------HHLEG----------------------------------  198 (315)
Q Consensus       160 ~i~~~~~~~~~~~l~~~s~dg~i~i~d~~~~~~~-------~~~~~----------------------------------  198 (315)
                      .+..++|+|+|++|+.++.++.+.+||.......       ..+..                                  
T Consensus       180 ~~~~~~~spdg~~l~~~s~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~  259 (360)
T d1k32a3         180 HDYAPAFDADSKNLYYLSYRSLDPSPDRVVLNFSFEVVSKPFVIPLIPGSPNPTKLVPRSMTSEAGEYDLNDMYKRSSPI  259 (360)
T ss_dssp             BEEEEEECTTSCEEEEEESCCCCCEECSSSSCEECCSCBEEEEEESSTTCCCGGGCCCGGGSCCCCCCCCTTGGGGCEEC
T ss_pred             ccccccccCCCCEEEEEeCCCceEcccccccceeeccccceEEEecccCccccceECCCcCcccccceeecccccceeec
Confidence            4778999999999999999999999986432211       00000                                  


Q ss_pred             --CccceEEEEEcC----------CC--CcEEEEEeCCCeEEEEeCCCCeeEEEeecccccEEEEEEcCCCCeEEEEeCC
Q 021247          199 --HFMPVRSLVYSP----------VD--PRVLFSASDDTHVHMYDAEGKSLVTAMSGHASWVLSVDASPDGAAITTGSSD  264 (315)
Q Consensus       199 --~~~~v~~~~~~~----------~~--~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~d  264 (315)
                        .......+...+          .+  ..++++++.++.|++||+++++..    .|.+.|.+++|+|||++|++++.|
T Consensus       260 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~----~~~~~v~~~~~SpDG~~l~~~~~D  335 (360)
T d1k32a3         260 NVDPGDYRMIIPLESSILIYSVPVHGEFAAYYQGAPEKGVLLKYDVKTRKVT----EVKNNLTDLRLSADRKTVMVRKDD  335 (360)
T ss_dssp             SCCCBCEEEEEECSSEEEEEECCCCCSHHHHHHCCCCCEEEEEEETTTCCEE----EEEEEEEEEEECTTSCEEEEEETT
T ss_pred             ccCcCceeEeeecCCCceEEEEEecCCCeeEEEecCCCCEEEEEECCCCeEE----EecCCcCEEEECCCCCEEEEEECC
Confidence              001112222222          11  113445567889999999887543    344568999999999999999999


Q ss_pred             CcEEEEecCccceehcccccccce
Q 021247          265 RTVKLWDLNMRAAMQSMTNHTDQV  288 (315)
Q Consensus       265 ~~i~iwd~~~~~~~~~~~~~~~~v  288 (315)
                      |.|++||++.++...++..+..++
T Consensus       336 g~i~v~d~~~~~~~~~~~~d~~~~  359 (360)
T d1k32a3         336 GKIYTFPLEKPEDERTVETDKRPL  359 (360)
T ss_dssp             SCEEEEESSCTTSCEECCCCSSCE
T ss_pred             CeEEEEECCCCCcceEEEeccccc
Confidence            999999999988777766555543

>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.96  E-value=5e-26  Score=195.27  Aligned_cols=281  Identities=12%  Similarity=-0.001  Sum_probs=195.7

Q ss_pred             cEEEEeeCCCcEEEEcCCCCcceeeccccccceEEEEeCCCCCEEEEeeCCCeEEEEECCCCce--eEEee---CCcccE
Q 021247           31 ALLLTGSLDETVKLWRPDDMQLERTNTGHCLGVVSVAAHPSGIIAASASLDSFVRVFDVDTNAS--IATLE---ASPSEV  105 (315)
Q Consensus        31 ~~l~sgs~d~~v~~w~~~~~~~~~~~~~h~~~v~~~~~~~~g~~l~s~~~d~~i~~w~~~~~~~--~~~~~---~~~~~v  105 (315)
                      .++++.+.||+|.+||.++.++.+.+..+ ..+..+.|+|||+++++++.|+++++||+.+++.  ...+.   .+...+
T Consensus        33 ~~~v~~~d~g~v~v~D~~t~~v~~~~~~g-~~~~~v~fSpDG~~l~~~s~dg~v~~~d~~t~~~~~~~~i~~~~~~~~~~  111 (432)
T d1qksa2          33 LFSVTLRDAGQIALIDGSTYEIKTVLDTG-YAVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIGSEARSIE  111 (432)
T ss_dssp             EEEEEETTTTEEEEEETTTCCEEEEEECS-SCEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCEEEEEECCSEEEEEE
T ss_pred             EEEEEEcCCCEEEEEECCCCcEEEEEeCC-CCeeEEEECCCCCEEEEEcCCCCEEEEEeeCCCceEEEEEecCCCCCCeE
Confidence            35699999999999999999999988766 4689999999999999999999999999988763  33333   233445


Q ss_pred             EEEEECCCCCeEEEEecCCCeEEEEecCCcceeeeecCCCCCCCCCCccCCCCcceEEEEECCCCCEE-EEecCCCcEEE
Q 021247          106 WQMQFDPKGTTLAVAGGGSASVKLWDTATWNLIATLSIPRPEGLKPTDKSSSKKFVLSVAWSPDGRRI-ACGSMDGTISV  184 (315)
Q Consensus       106 ~~~~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l-~~~s~dg~i~i  184 (315)
                      ....|+|+|+++++++..++++++||..+++.+..+........  ............+.++|+|..+ ++...++.|.+
T Consensus       112 ~s~~~SpDG~~l~vs~~~~~~v~i~d~~t~~~~~~~~~~~~~~~--~~~~~~~~~~~~v~~s~dg~~~~vs~~~~~~i~~  189 (432)
T d1qksa2         112 TSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYD--EQEYHPEPRVAAILASHYRPEFIVNVKETGKILL  189 (432)
T ss_dssp             ECCSTTCTTTEEEEEEEETTEEEEEETTTCCEEEEEECCEECTT--TCCEESCCCEEEEEECSSSSEEEEEETTTTEEEE
T ss_pred             EecccCCCCCEEEEEcCCCCeEEEEeCccccceeeeccCCcccc--ceeccCCCceeEEEECCCCCEEEEEEccCCeEEE
Confidence            56678889999989999999999999999988877654322111  0111223346778999999876 56678899999


Q ss_pred             EEcccceeeeeec-CCccceEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCeeEEEee-----------------------
Q 021247          185 FDVTRAKFLHHLE-GHFMPVRSLVYSPVDPRVLFSASDDTHVHMYDAEGKSLVTAMS-----------------------  240 (315)
Q Consensus       185 ~d~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~-----------------------  240 (315)
                      ||..+.+...... .+...+..+.|+|++..+++++..+..+.++|.+.++.+....                       
T Consensus       190 ~d~~~~~~~~~~~i~~g~~~~~~~~spdg~~~~va~~~~~~v~v~d~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~~~  269 (432)
T d1qksa2         190 VDYTDLNNLKTTEISAERFLHDGGLDGSHRYFITAANARNKLVVIDTKEGKLVAIEDTGGQTPHPGRGANFVHPTFGPVW  269 (432)
T ss_dssp             EETTCSSEEEEEEEECCSSEEEEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSSBCCTTCEEEEETTTEEEE
T ss_pred             EEccCCCcceEEEEcccCccccceECCCCCEEEEeccccceEEEeecccceEEEEeccCccccccCcccceecCCCCcee
Confidence            9987765443222 2345678999999554455555667788999876544332110                       


Q ss_pred             ---------------------cccccEEEEEEcCCCCeEEEEeCCCcEEEEecCccce----------------------
Q 021247          241 ---------------------GHASWVLSVDASPDGAAITTGSSDRTVKLWDLNMRAA----------------------  277 (315)
Q Consensus       241 ---------------------~~~~~i~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~----------------------  277 (315)
                                           .|...+....++|++..+++++.+...++|+......                      
T Consensus       270 ~~~~lg~~~v~~~~~~~~~~~~~~~~v~~~~~~~~g~~~~~~s~p~~~~lw~~~~~~~~~~~~~sv~vpDg~~la~~s~d  349 (432)
T d1qksa2         270 ATSHMGDDSVALIGTDPEGHPDNAWKILDSFPALGGGSLFIKTHPNSQYLYVDATLNPEAEISGSVAVFDIKAMTGDGSD  349 (432)
T ss_dssp             EEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECSCSCCCCEECCTTCSEEEEECTTCSSHHHHTCEEEEEGGGCCCSSSC
T ss_pred             cccccCCceEEecccccccccccccEEEEEEEcCCCCeEEEEecCCccceeecccCCCCCCeeeEEEEEechhhcccccC
Confidence                                 0122345556666666666666666666664322100                      


Q ss_pred             ----------ehcccccccceEEEEEeeCCCEEEEEe-----CCCcEEEeec
Q 021247          278 ----------MQSMTNHTDQVWGVSFRPLGGRVVSVS-----DDKSISLYEY  314 (315)
Q Consensus       278 ----------~~~~~~~~~~v~~~~~s~~~~~l~s~~-----~d~~i~i~~~  314 (315)
                                ...+..|...+.+++|||||++|+...     .++.|+|||-
T Consensus       350 ~~~k~w~~~~~~~l~~~~~~v~~~~fS~DG~~v~~S~~~~~~~~g~i~i~D~  401 (432)
T d1qksa2         350 PEFKTLPIAEWAGITEGQPRVVQGEFNKDGTEVWFSVWNGKDQESALVVVDD  401 (432)
T ss_dssp             CCEEEECHHHHHTCCSSCCEEEEEEECTTSSEEEEEEECCTTSCCEEEEEET
T ss_pred             CceEecccccccccCCCCCcEEEeEECCCCCEEEEEEecCCCCCCcEEEEEC
Confidence                      011234566788999999999885432     4688999983

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.95  E-value=4.1e-25  Score=182.56  Aligned_cols=265  Identities=16%  Similarity=0.204  Sum_probs=197.4

Q ss_pred             cEEEEeeCCCcEEEEcCCCCcceeeccc--cccceEEEEeCCCCCEE-EEeeCCCeEEEEECCCCceeEEeeCCcc----
Q 021247           31 ALLLTGSLDETVKLWRPDDMQLERTNTG--HCLGVVSVAAHPSGIIA-ASASLDSFVRVFDVDTNASIATLEASPS----  103 (315)
Q Consensus        31 ~~l~sgs~d~~v~~w~~~~~~~~~~~~~--h~~~v~~~~~~~~g~~l-~s~~~d~~i~~w~~~~~~~~~~~~~~~~----  103 (315)
                      .++++++.|++|++||.++.++.+.++.  +...+.+++++|||+++ ++++.++.|++||+.+++.+..+..+..    
T Consensus         2 ~~~vt~~~d~~v~v~D~~s~~~~~~i~~~~~~~~~~~i~~spDg~~l~v~~~~~~~v~v~D~~t~~~~~~~~~~~~~~~~   81 (337)
T d1pbyb_           2 DYILAPARPDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLSTPEERV   81 (337)
T ss_dssp             EEEEEEETTTEEEEEETTTTEEEEEEECTTCTTCCCCEEECTTSSEEEEEETTTTEEEEEETTTCCEEEEEECCBTTEEE
T ss_pred             eEEEEEcCCCEEEEEECCCCeEEEEEECCCCCCCccEEEECCCCCEEEEEECCCCeEEEEECCCCcEEEEEecCCCcccc
Confidence            3799999999999999999988887654  34567899999999976 5677899999999999998887765432    


Q ss_pred             -cEEEEEECCCCCeEEEEec-----------CCCeEEEEecCCcceeeeecCCCCCCCCCCccCCCCcceEEEEECCCCC
Q 021247          104 -EVWQMQFDPKGTTLAVAGG-----------GSASVKLWDTATWNLIATLSIPRPEGLKPTDKSSSKKFVLSVAWSPDGR  171 (315)
Q Consensus       104 -~v~~~~~~~~~~~~~~~~~-----------~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~  171 (315)
                       .+..++++|+++.++++..           .+..+.+||..+++....+..+.              .+..++|+|+|+
T Consensus        82 ~~~~~v~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~--------------~~~~~~~s~dg~  147 (337)
T d1pbyb_          82 KSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEAPR--------------QITMLAWARDGS  147 (337)
T ss_dssp             ECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEECCS--------------SCCCEEECTTSS
T ss_pred             cceeeEEEcCCCcEEEEeecCCcceeeeccccccceeeccccCCeEEEeccccC--------------CceEEEEcCCCC
Confidence             3457899999998766543           46788999998887776664322              256789999999


Q ss_pred             EEEEecCCCcEEEEEcccceeeeeecCCccce------EEEEEcCC----------------CCcEEEEEeCCCeEEEEe
Q 021247          172 RIACGSMDGTISVFDVTRAKFLHHLEGHFMPV------RSLVYSPV----------------DPRVLFSASDDTHVHMYD  229 (315)
Q Consensus       172 ~l~~~s~dg~i~i~d~~~~~~~~~~~~~~~~v------~~~~~~~~----------------~~~~l~s~~~d~~i~~wd  229 (315)
                      ++++++.  .+.+||..+++....+..+....      ....+.+.                +......+..++.+.+||
T Consensus       148 ~l~~~~~--~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  225 (337)
T d1pbyb_         148 KLYGLGR--DLHVMDPEAGTLVEDKPIQSWEAETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMD  225 (337)
T ss_dssp             CEEEESS--SEEEEETTTTEEEEEECSTTTTTTTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEE
T ss_pred             EEEEEcC--CcceeeeecCcEEEEeecCCccccceecCCcceeeccccccceeeeeeeeeeeccceeeecccCccEEEEE
Confidence            9998864  47789998887766654322110      00001100                011111223345688899


Q ss_pred             CCCCeeEE-EeecccccEEEEEEcCCCCeEEEEeCCCcEEEEecCccceehcccccccceEEEEEeeCCCEEEEEeCCCc
Q 021247          230 AEGKSLVT-AMSGHASWVLSVDASPDGAAITTGSSDRTVKLWDLNMRAAMQSMTNHTDQVWGVSFRPLGGRVVSVSDDKS  308 (315)
Q Consensus       230 ~~~~~~~~-~~~~~~~~i~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~  308 (315)
                      ...+.... ....+...+..+.++|++.+++.+  ++.|++||+.+++.+..+. +...+.+++|+|||++|++++.|++
T Consensus       226 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~i~v~d~~~~~~~~~~~-~~~~~~~~~~s~dG~~l~v~~~~~~  302 (337)
T d1pbyb_         226 LETGEMAMREVRIMDVFYFSTAVNPAKTRAFGA--YNVLESFDLEKNASIKRVP-LPHSYYSVNVSTDGSTVWLGGALGD  302 (337)
T ss_dssp             TTTCCEEEEEEEECSSCEEEEEECTTSSEEEEE--ESEEEEEETTTTEEEEEEE-CSSCCCEEEECTTSCEEEEESBSSE
T ss_pred             cCCCcEEEEEecCCCcceEEEEecccceEEEEc--cccEEEEECCCCcEEEEEc-CCCCEEEEEECCCCCEEEEEeCCCc
Confidence            88776544 345667778889999999887765  5889999999998887764 5567889999999999999999999


Q ss_pred             EEEeec
Q 021247          309 ISLYEY  314 (315)
Q Consensus       309 i~i~~~  314 (315)
                      |+|||.
T Consensus       303 i~v~D~  308 (337)
T d1pbyb_         303 LAAYDA  308 (337)
T ss_dssp             EEEEET
T ss_pred             EEEEEC
Confidence            999996

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

Probab=99.93  E-value=3.9e-24  Score=177.29  Aligned_cols=273  Identities=13%  Similarity=0.099  Sum_probs=194.6

Q ss_pred             EEeecCCCCCcEEEEeeCCCcEEEEcCCCCcceeecc-ccccceEEEEeCCCCCEE-EEeeCCCeEEEEECCCCceeEEe
Q 021247           21 TWVPATETRPALLLTGSLDETVKLWRPDDMQLERTNT-GHCLGVVSVAAHPSGIIA-ASASLDSFVRVFDVDTNASIATL   98 (315)
Q Consensus        21 ~~~~~~~~~~~~l~sgs~d~~v~~w~~~~~~~~~~~~-~h~~~v~~~~~~~~g~~l-~s~~~d~~i~~w~~~~~~~~~~~   98 (315)
                      +|++.++    ++++++.|++|.+||.++.++.+.+. .|...+..+.++|||+++ +++..++.|++||+.+++.+..+
T Consensus         3 a~~~~~~----~l~~~~~~~~v~v~D~~t~~~~~t~~~~~~~~p~~l~~spDG~~l~v~~~~~~~v~~~d~~t~~~~~~~   78 (346)
T d1jmxb_           3 ALKAGHE----YMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTFHA   78 (346)
T ss_dssp             CCCTTCE----EEEEEETTTEEEEEETTTTEEEEEEECSSCCSSCEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEE
T ss_pred             cCCCCCc----EEEEEcCCCEEEEEECCCCCEEEEEEcCCCCCcceEEECCCCCEEEEEECCCCcEEEEeCccCeeeeee
Confidence            4555443    89999999999999999999888765 456678899999999876 56678899999999999887766


Q ss_pred             eCCcc------cEEEEEECCCCCeEEEEe-----------cCCCeEEEEecCCcceeeeecCCCCCCCCCCccCCCCcce
Q 021247           99 EASPS------EVWQMQFDPKGTTLAVAG-----------GGSASVKLWDTATWNLIATLSIPRPEGLKPTDKSSSKKFV  161 (315)
Q Consensus        99 ~~~~~------~v~~~~~~~~~~~~~~~~-----------~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i  161 (315)
                      .....      .+..++++|+|+.++++.           ..+..+.+||..+++....+....           ....+
T Consensus        79 ~~~~~~~~~~~~~~~v~~s~DG~~l~v~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~-----------~~~~~  147 (346)
T d1jmxb_          79 NLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFP-----------MPRQV  147 (346)
T ss_dssp             ESCCSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEEE-----------CCSSC
T ss_pred             cccccccccCCceEEEEEecCCCEEEEEecCCcceeeeeccCcceEEEEecccceeeeEEEeee-----------ccCce
Confidence            54322      345789999999877653           246778889887765443221110           01123


Q ss_pred             EEEEECCCCCEEEEecCCCcEEEEEcccceeeeeecCCccceEEEEEcCC-------------------------CCcEE
Q 021247          162 LSVAWSPDGRRIACGSMDGTISVFDVTRAKFLHHLEGHFMPVRSLVYSPV-------------------------DPRVL  216 (315)
Q Consensus       162 ~~~~~~~~~~~l~~~s~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~-------------------------~~~~l  216 (315)
                      ..+.+++++..++.+   +.+.+||+.+++....+..+.. ...+.++|.                         ....+
T Consensus       148 ~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  223 (346)
T d1jmxb_         148 YLMRAADDGSLYVAG---PDIYKMDVKTGKYTVALPLRNW-NRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDP  223 (346)
T ss_dssp             CCEEECTTSCEEEES---SSEEEECTTTCCEEEEECSTTC-CCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC-------
T ss_pred             EEEEecCCCEEEEeC---CcceEEEccCCCEEEEEecCCC-ccceEEeccccEEEEEecCCCceEeeeeeeeeccCceeE
Confidence            455667777666543   5688999988877766543321 111222221                         22233


Q ss_pred             EEEeCCCeEEEEeCCCCeeEE-EeecccccEEEEEEcCCCCeEEEEeCCCcEEEEecCccceehcccccccceEEEEEee
Q 021247          217 FSASDDTHVHMYDAEGKSLVT-AMSGHASWVLSVDASPDGAAITTGSSDRTVKLWDLNMRAAMQSMTNHTDQVWGVSFRP  295 (315)
Q Consensus       217 ~s~~~d~~i~~wd~~~~~~~~-~~~~~~~~i~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~  295 (315)
                      .++..+..+.+||...+.... ....|...+..+.+++++..++... ++.|++||..+++.+..+. +...+++++|||
T Consensus       224 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~v~v~d~~~~~~~~~~~-~~~~~~~va~s~  301 (346)
T d1jmxb_         224 ATADLLYGYLSVDLKTGKTHTQEFADLTELYFTGLRSPKDPNQIYGV-LNRLAKYDLKQRKLIKAAN-LDHTYYCVAFDK  301 (346)
T ss_dssp             CCCEEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECSSCTTEEEEE-ESEEEEEETTTTEEEEEEE-CSSCCCEEEECS
T ss_pred             eeccCCceEEEEECCCCceEEEEeecccceeEEEEEeCCCCEEEEec-CCeEEEEECCCCcEEEEEc-CCCCEEEEEEcC
Confidence            444556678888888765443 4556778888999999988887766 4579999999988877764 445788999999


Q ss_pred             CCCEEEEEeCCCcEEEeec
Q 021247          296 LGGRVVSVSDDKSISLYEY  314 (315)
Q Consensus       296 ~~~~l~s~~~d~~i~i~~~  314 (315)
                      ||++|++++.|+.|++||.
T Consensus       302 DG~~l~v~~~d~~v~v~D~  320 (346)
T d1jmxb_         302 KGDKLYLGGTFNDLAVFNP  320 (346)
T ss_dssp             SSSCEEEESBSSEEEEEET
T ss_pred             CCCEEEEEeCCCcEEEEEC
Confidence            9999999999999999996

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

Probab=99.93  E-value=2.1e-22  Score=163.58  Aligned_cols=247  Identities=18%  Similarity=0.244  Sum_probs=193.4

Q ss_pred             cceEEEEEeecCCCCCcEEEEeeCCCcEEEEcCCCCcceeeccccccceEEEEeCCCCCEE-EEeeCCCeEEEEECCCCc
Q 021247           15 ESVWAVTWVPATETRPALLLTGSLDETVKLWRPDDMQLERTNTGHCLGVVSVAAHPSGIIA-ASASLDSFVRVFDVDTNA   93 (315)
Q Consensus        15 ~~v~~v~~~~~~~~~~~~l~sgs~d~~v~~w~~~~~~~~~~~~~h~~~v~~~~~~~~g~~l-~s~~~d~~i~~w~~~~~~   93 (315)
                      ..+.+++|+|+++.   ++++++.++.|++||..+.+....+..+. .+..+.+++++..+ +++..++.+++|+..+++
T Consensus        32 ~~p~~va~spdG~~---l~v~~~~~~~i~v~d~~t~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  107 (301)
T d1l0qa2          32 SNPMGAVISPDGTK---VYVANAHSNDVSIIDTATNNVIATVPAGS-SPQGVAVSPDGKQVYVTNMASSTLSVIDTTSNT  107 (301)
T ss_dssp             SSEEEEEECTTSSE---EEEEEGGGTEEEEEETTTTEEEEEEECSS-SEEEEEECTTSSEEEEEETTTTEEEEEETTTTE
T ss_pred             CCceEEEEeCCCCE---EEEEECCCCEEEEEECCCCceeeeeeccc-cccccccccccccccccccccceeeecccccce
Confidence            46789999998763   45677889999999999988877776654 46889999999755 466677899999999998


Q ss_pred             eeEEeeCCcccEEEEEECCCCCeEEEEecCCCeEEEEecCCcceeeeecCCCCCCCCCCccCCCCcceEEEEECCCCCEE
Q 021247           94 SIATLEASPSEVWQMQFDPKGTTLAVAGGGSASVKLWDTATWNLIATLSIPRPEGLKPTDKSSSKKFVLSVAWSPDGRRI  173 (315)
Q Consensus        94 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l  173 (315)
                      ....+..+ .....+.++|++..+++++..+..+.+|+..+.+....+....              .+..++++|+++.+
T Consensus       108 ~~~~~~~~-~~~~~~~~~~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~  172 (301)
T d1l0qa2         108 VAGTVKTG-KSPLGLALSPDGKKLYVTNNGDKTVSVINTVTKAVINTVSVGR--------------SPKGIAVTPDGTKV  172 (301)
T ss_dssp             EEEEEECS-SSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECCS--------------SEEEEEECTTSSEE
T ss_pred             eeeecccc-ccceEEEeecCCCeeeeeeccccceeeeeccccceeeecccCC--------------CceEEEeeccccce
Confidence            88877755 4567889999999998888889999999999887776654321              26789999999888


Q ss_pred             EEecC-CCcEEEEEcccceeeeeecCCccceEEEEEcCCCCcEEEEEe--CCCeEEEEeCCCCeeEEEeecccccEEEEE
Q 021247          174 ACGSM-DGTISVFDVTRAKFLHHLEGHFMPVRSLVYSPVDPRVLFSAS--DDTHVHMYDAEGKSLVTAMSGHASWVLSVD  250 (315)
Q Consensus       174 ~~~s~-dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~--~d~~i~~wd~~~~~~~~~~~~~~~~i~~~~  250 (315)
                      +++.. ++.+.+|+....+.......+ ..+..+.|++.+..+++++.  .++.|++||..+++++..+..+ ..+.+++
T Consensus       173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~g~~~~v~~~~~~~~~v~v~D~~t~~~~~~~~~~-~~~~~va  250 (301)
T d1l0qa2         173 YVANFDSMSISVIDTVTNSVIDTVKVE-AAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTNKITARIPVG-PDPAGIA  250 (301)
T ss_dssp             EEEETTTTEEEEEETTTTEEEEEEECS-SEEEEEEECTTSSEEEEEEECSSCCEEEEEETTTTEEEEEEECC-SSEEEEE
T ss_pred             eeecccccccccccccceeeeeccccc-CCcceeeccccccccccccccceeeeeeeeecCCCeEEEEEcCC-CCEEEEE
Confidence            76654 466778887777666655544 45678889986555555443  3578999999999888776643 4588999


Q ss_pred             EcCCCCeE-EEEeCCCcEEEEecCccceehccc
Q 021247          251 ASPDGAAI-TTGSSDRTVKLWDLNMRAAMQSMT  282 (315)
Q Consensus       251 ~~~~~~~l-~s~~~d~~i~iwd~~~~~~~~~~~  282 (315)
                      |+|+|++| ++++.|++|++||+++++.+.++.
T Consensus       251 ~spdg~~l~va~~~~~~i~v~D~~t~~~~~~~~  283 (301)
T d1l0qa2         251 VTPDGKKVYVALSFCNTVSVIDTATNTITATMA  283 (301)
T ss_dssp             ECTTSSEEEEEETTTTEEEEEETTTTEEEEEEE
T ss_pred             EeCCCCEEEEEECCCCeEEEEECCCCeEEEEEe
Confidence            99999976 677789999999999998887764

>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=99.93  E-value=7.1e-24  Score=181.67  Aligned_cols=267  Identities=13%  Similarity=0.052  Sum_probs=184.9

Q ss_pred             hccccceEEEEEeecCCCCCcEEEEeeCCCcEEEEcCCCCccee-----eccccccceEEEEeCCCCCEE-EEeeCCCeE
Q 021247           11 NAHEESVWAVTWVPATETRPALLLTGSLDETVKLWRPDDMQLER-----TNTGHCLGVVSVAAHPSGIIA-ASASLDSFV   84 (315)
Q Consensus        11 ~~h~~~v~~v~~~~~~~~~~~~l~sgs~d~~v~~w~~~~~~~~~-----~~~~h~~~v~~~~~~~~g~~l-~s~~~d~~i   84 (315)
                      ..| ..+.+++|+|+++    ++++++.|++|++||.++.+...     ...+|...+.++.|+|+|+++ +++..++.+
T Consensus        59 ~~g-~~~~~vafSPDGk----~l~~~~~d~~v~vwd~~t~~~~~~~~i~~~~~~~~~~~s~~~spDG~~l~v~~~~~~~v  133 (426)
T d1hzua2          59 DTG-YAVHISRMSASGR----YLLVIGRDARIDMIDLWAKEPTKVAEIKIGIEARSVESSKFKGYEDRYTIAGAYWPPQF  133 (426)
T ss_dssp             ECC-SSEEEEEECTTSC----EEEEEETTSEEEEEETTSSSCEEEEEEECCSEEEEEEECCSTTCTTTEEEEEEEESSEE
T ss_pred             eCC-CCeeEEEECCCCC----EEEEEeCCCCEEEEEccCCceeEEEEEeCCCCCcceEEeeeecCCCCEEEEeecCCCeE
Confidence            344 4699999999886    68999999999999998876432     234677778888999999976 455689999


Q ss_pred             EEEECCCCceeEEeeCC-------------------------------------------------------cccEEEEE
Q 021247           85 RVFDVDTNASIATLEAS-------------------------------------------------------PSEVWQMQ  109 (315)
Q Consensus        85 ~~w~~~~~~~~~~~~~~-------------------------------------------------------~~~v~~~~  109 (315)
                      ++||..++..+.....+                                                       ...+..+.
T Consensus       134 ~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~d~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~  213 (426)
T d1hzua2         134 AIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKETGKVLLVNYKDIDNLTVTSIGAAPFLADGG  213 (426)
T ss_dssp             EEEETTTCCEEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEECSSSSSCEEEEEECCSSEEEEE
T ss_pred             EEEcCCccceeEEeeccCCCccceeecCCCceeEEEECCCCCEEEEecCCCCeEEEEEeccccceeeEEeccCCccEeee
Confidence            99998877554332211                                                       12234667


Q ss_pred             ECCCCCeEEEEecCCCeEEEEecCCcceeeeecCCCCCCCCCCccCCCCcceEEEEECCCC--CE-EEEecCCCcEEEEE
Q 021247          110 FDPKGTTLAVAGGGSASVKLWDTATWNLIATLSIPRPEGLKPTDKSSSKKFVLSVAWSPDG--RR-IACGSMDGTISVFD  186 (315)
Q Consensus       110 ~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~--~~-l~~~s~dg~i~i~d  186 (315)
                      ++|++++++++...+..+.+++..+++.+..........         .  .....+.+.+  .. .+..+.|+.+.+|+
T Consensus       214 ~~~~g~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~--~~~~~~~~~~~~~~~~~~~~~d~~v~~~~  282 (426)
T d1hzua2         214 WDSSHRYFMTAANNSNKVAVIDSKDRRLSALVDVGKTPH---------P--GRGANFVHPKYGPVWSTSHLGDGSISLIG  282 (426)
T ss_dssp             ECTTSCEEEEEETTCSEEEEEETTTTEEEEEEECSSCCC---------C--SCCEEEEETTTEEEEEEECTTTCEEEEEE
T ss_pred             ECCCCcEEEeeeecccceeeeecccccEEEEeccCCccc---------c--cceeeeecCCCCceEEeccCCCceEEEee
Confidence            777777777777777778888877777666554322110         0  1112222211  11 12334566777776


Q ss_pred             ccc-------ceeeeeecCCccceEEEEEcCCCCcEEE-------EEeCCCeEEEEeCCCCeeEEEe---------eccc
Q 021247          187 VTR-------AKFLHHLEGHFMPVRSLVYSPVDPRVLF-------SASDDTHVHMYDAEGKSLVTAM---------SGHA  243 (315)
Q Consensus       187 ~~~-------~~~~~~~~~~~~~v~~~~~~~~~~~~l~-------s~~~d~~i~~wd~~~~~~~~~~---------~~~~  243 (315)
                      ...       .+....+.+|...+..++|+| ++++|+       +++.+++|++||.++++....+         ..|.
T Consensus       283 ~~~~~~~~~~~~~~~~l~g~~~~v~~v~~sP-dg~~l~v~~~~~~s~~~~~tv~vwd~~t~~~~~~~~~~~~~~~~~~~~  361 (426)
T d1hzua2         283 TDPKNHPQYAWKKVAELQGQGGGSLFIKTHP-KSSHLYVDTTFNPDARISQSVAVFDLKNLDAKYQVLPIAEWADLGEGA  361 (426)
T ss_dssp             CCTTTCTTTBTSEEEEEECSSSCCCCEECCT-TCSEEEECCTTCSSHHHHTCEEEEETTCTTSCCEEECHHHHHCCCSSC
T ss_pred             ccccccccccceEeEEEecCCCceeEEEcCC-CCceEEEeecCCCCcccCCEEEEEECCCCCcCeEEeccchhcccCCCC
Confidence            533       356778889999999999999 556666       3556889999999887655443         2456


Q ss_pred             ccEEEEEEcCCCCeEE-EE----eCCCcEEEEecCccceehcccccccceEEEEEeeCCCEE
Q 021247          244 SWVLSVDASPDGAAIT-TG----SSDRTVKLWDLNMRAAMQSMTNHTDQVWGVSFRPLGGRV  300 (315)
Q Consensus       244 ~~i~~~~~~~~~~~l~-s~----~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l  300 (315)
                      ..+.+++|+|||+.++ ++    +.++.|+|||.++++..+.+.++.      .++|+|++.
T Consensus       362 ~rv~~~~fSpDGk~i~vs~~~~~~~~~~i~v~D~~T~k~~~~i~~~~------~~tp~Gk~~  417 (426)
T d1hzua2         362 KRVVQPEYNKRGDEVWFSVWNGKNDSSALVVVDDKTLKLKAVVKDPR------LITPTGKFN  417 (426)
T ss_dssp             CCEEEEEECSSSSEEEEEECCCTTSCCEEEEEETTTTEEEEEECCTT------CCSEEEEEE
T ss_pred             ccEEEEEECCCCCEEEEEEecCCCCCCeEEEEECCCCeEEEEECCCC------ccCCCceEe
Confidence            6799999999998664 32    357889999999999888877653      356877764

>d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Putative isomerase YbhE
family: Putative isomerase YbhE
domain: Putative isomerase YbhE
species: Escherichia coli [TaxId: 562]

Probab=99.91  E-value=6.6e-22  Score=163.10  Aligned_cols=272  Identities=14%  Similarity=0.212  Sum_probs=184.6

Q ss_pred             EEEEeeCCCcEEEEcCCCCcceee--ccccccceEEEEeCCCCCEEE-EeeCCCeEEEEECCCCceeEEe---eCCcccE
Q 021247           32 LLLTGSLDETVKLWRPDDMQLERT--NTGHCLGVVSVAAHPSGIIAA-SASLDSFVRVFDVDTNASIATL---EASPSEV  105 (315)
Q Consensus        32 ~l~sgs~d~~v~~w~~~~~~~~~~--~~~h~~~v~~~~~~~~g~~l~-s~~~d~~i~~w~~~~~~~~~~~---~~~~~~v  105 (315)
                      ++++++.|++|++|+++.......  ...|...+..++|+|||++|+ ++..|+.|++|++........+   ......+
T Consensus         6 v~v~~~~~~~I~v~~~~~~~~l~~~~~~~~~~~v~~la~spDG~~L~v~~~~d~~i~~~~i~~~~~~~~~~~~~~~~~~p   85 (333)
T d1ri6a_           6 VYIASPESQQIHVWNLNHEGALTLTQVVDVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESALPGSL   85 (333)
T ss_dssp             EEEEEGGGTEEEEEEECTTSCEEEEEEEECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEECSSCC
T ss_pred             EEEECCCCCcEEEEEEcCCCCeEEEEEEcCCCCEeEEEEeCCCCEEEEEECCCCeEEEEEEeCCCCcEEEeeecccCCCc
Confidence            568888999999999865433222  235778899999999999885 5556899999999876433222   2233456


Q ss_pred             EEEEECCCCCeEEEEecCCCeEEEEecCCcceeeeecCCCCCCCCCCccCCCCcceEEEEECCCCCEEEEec-CCCcEEE
Q 021247          106 WQMQFDPKGTTLAVAGGGSASVKLWDTATWNLIATLSIPRPEGLKPTDKSSSKKFVLSVAWSPDGRRIACGS-MDGTISV  184 (315)
Q Consensus       106 ~~~~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~s-~dg~i~i  184 (315)
                      ..++|+|+|+++++++..++.+.+|+.............           .+...+.++.++|++++++.+. .+..+.+
T Consensus        86 ~~l~~spDg~~l~v~~~~~~~v~~~~~~~~~~~~~~~~~-----------~~~~~~~~v~~s~d~~~~~~~~~~~~~i~~  154 (333)
T d1ri6a_          86 THISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVV-----------EGLDGCHSANISPDNRTLWVPALKQDRICL  154 (333)
T ss_dssp             SEEEECTTSSEEEEEETTTTEEEEEEEETTEEEEEEEEE-----------CCCTTBCCCEECTTSSEEEEEEGGGTEEEE
T ss_pred             eEEEEcCCCCEEeecccCCCceeeeccccccceeccccc-----------CCCccceEEEeeecceeeeccccccceeeE
Confidence            679999999998888778899999988765444333211           1122356789999999887665 4557999


Q ss_pred             EEcccceeee------eecCCccceEEEEEcCCCCcEEEEEeCCCeEEEEeCCCC--ee--EEEee------cccccEEE
Q 021247          185 FDVTRAKFLH------HLEGHFMPVRSLVYSPVDPRVLFSASDDTHVHMYDAEGK--SL--VTAMS------GHASWVLS  248 (315)
Q Consensus       185 ~d~~~~~~~~------~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~--~~--~~~~~------~~~~~i~~  248 (315)
                      |+........      .........+.+.|++.+...+.+....+...+|+....  ..  .....      ........
T Consensus       155 ~~~~~~~~~~~~~~~~~~~~~g~~p~~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  234 (333)
T d1ri6a_         155 FTVSDDGHLVAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAAD  234 (333)
T ss_dssp             EEECTTSCEEEEEEEEEECSTTCCEEEEEECTTSSEEEEEETTTTEEEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEE
T ss_pred             EEeccCCcceeeeceeeeeecCCCccEEEEeccceeEEeeccccCceEEEeecccccceeeeeeeeeeecCCCcccccee
Confidence            9986543221      112233456889999866555566667778888876432  11  11111      12345677


Q ss_pred             EEEcCCCCeEE-EEeCCCcEEEEecCccceehcc---cccccceEEEEEeeCCCEEEEEe-CCCcEEEeec
Q 021247          249 VDASPDGAAIT-TGSSDRTVKLWDLNMRAAMQSM---TNHTDQVWGVSFRPLGGRVVSVS-DDKSISLYEY  314 (315)
Q Consensus       249 ~~~~~~~~~l~-s~~~d~~i~iwd~~~~~~~~~~---~~~~~~v~~~~~s~~~~~l~s~~-~d~~i~i~~~  314 (315)
                      +++++++++++ ++..++.+.+|++.........   ......+++++|+|||++|++++ .+++|+||++
T Consensus       235 ~~~s~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~a~spDGk~l~va~~~~~~v~v~~i  305 (333)
T d1ri6a_         235 IHITPDGRHLYACDRTASLITVFSVSEDGSVLSKEGFQPTETQPRGFNVDHSGKYLIAAGQKSHHISVYEI  305 (333)
T ss_dssp             EEECTTSSEEEEEETTTTEEEEEEECTTSCCEEEEEEEECSSSCCCEEECTTSSEEEEECTTTCEEEEEEE
T ss_pred             EEEecccCceeeecccCCeEEEEEEcCCCCEEEEEEEeCCCCCeeEEEEeCCCCEEEEEECCCCeEEEEEE
Confidence            88999998654 4566788999988754333222   22345678899999999886654 5689999975

>d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]

Probab=99.89  E-value=1.1e-19  Score=152.28  Aligned_cols=279  Identities=14%  Similarity=0.043  Sum_probs=192.3

Q ss_pred             hccccceEEEEEeecCCCCCcEEEE--e--eCCCcEEEEcCCCCcceeeccccccceEEEEeCCCCCEEEEee-------
Q 021247           11 NAHEESVWAVTWVPATETRPALLLT--G--SLDETVKLWRPDDMQLERTNTGHCLGVVSVAAHPSGIIAASAS-------   79 (315)
Q Consensus        11 ~~h~~~v~~v~~~~~~~~~~~~l~s--g--s~d~~v~~w~~~~~~~~~~~~~h~~~v~~~~~~~~g~~l~s~~-------   79 (315)
                      ..|..++..++++|++..   +.++  +  +.++.|.+||.++.+....+..+..+  .+.|+|||++++.+.       
T Consensus        17 ~~~~~p~~~~a~spdg~~---~~~~~~~~~~~~~~v~v~D~~tg~~~~~~~~~~~~--~~a~SpDG~~l~va~~~~~~~~   91 (373)
T d2madh_          17 GAADGPTNDEAPGADGRR---SYINLPAHHSAIIQQWVLDAGSGSILGHVNGGFLP--NPVAAHSGSEFALASTSFSRIA   91 (373)
T ss_pred             ccCCCCccccccCCCCCE---EEEEcccccCCCceEEEEECCCCCEEEEEeCCCCc--cEEEcCCCCEEEEEeecCCccc
Confidence            578889999999998863   2333  1  34467999999999888877666543  789999999998764       


Q ss_pred             ---CCCeEEEEECCCCceeEEeeCCcccE-------EEEEECCCCCeEEEEe-cCCCeEEEEecCCcceeeeecCCCCCC
Q 021247           80 ---LDSFVRVFDVDTNASIATLEASPSEV-------WQMQFDPKGTTLAVAG-GGSASVKLWDTATWNLIATLSIPRPEG  148 (315)
Q Consensus        80 ---~d~~i~~w~~~~~~~~~~~~~~~~~v-------~~~~~~~~~~~~~~~~-~~d~~i~~~d~~~~~~~~~~~~~~~~~  148 (315)
                         .++.|++||..+++.+..+..+....       ..+.|+|+++.+++.. ..++.+.+|+....+......      
T Consensus        92 ~~~~~~~v~v~D~~t~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~~~~~~~~~~~~~~~~~~------  165 (373)
T d2madh_          92 KGKRTDYVEVFDPVTFLPIADIELPDAPRFDVGPYSWMNANTPNNADLLFFQFAAGPAVGLVVQGGSSDDQLLS------  165 (373)
T ss_pred             ccccceEEEEEECCCCcEEEEEecCCcceeEeccCCCcEEEEeCCCcEEEEEEcCCCceEEeeccCCeEEEEec------
Confidence               46789999999999887776655443       3456677776554433 345677777776544433221      


Q ss_pred             CCCCccCCCCcceEEEEECCCCCEE-EEecCCCcEEEEEcccceeeeeecCCc------cceEEEEEcCCCCcEEEEEeC
Q 021247          149 LKPTDKSSSKKFVLSVAWSPDGRRI-ACGSMDGTISVFDVTRAKFLHHLEGHF------MPVRSLVYSPVDPRVLFSASD  221 (315)
Q Consensus       149 ~~~~~~~~~~~~i~~~~~~~~~~~l-~~~s~dg~i~i~d~~~~~~~~~~~~~~------~~v~~~~~~~~~~~~l~s~~~  221 (315)
                                 ...++.++|+++.+ ++.+.|+.+.+||...+........+.      .......+.  ....++..+.
T Consensus       166 -----------~~~~~~~s~~g~~~~v~~~~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~  232 (373)
T d2madh_         166 -----------SPTCYHIHPGAPSTFYLLCAQGGLAKTDHAGGAAGAGLVGAMLTAAQNLLTQPAQAN--KSGRIVWPVY  232 (373)
T ss_pred             -----------cceeEEEecCCCcEEEEEcCCCeEEEEEcCCceeeEEEeeeccccCccceeeeEEEC--CCceEEEecC
Confidence                       24578899988755 678899999999998777655443221      122333444  3445667778


Q ss_pred             CCeEEEEeCCCCeeEE--Eeecc----------cccEEEEEEcCCCC----------eEEEEeCCCcEEEEecCccceeh
Q 021247          222 DTHVHMYDAEGKSLVT--AMSGH----------ASWVLSVDASPDGA----------AITTGSSDRTVKLWDLNMRAAMQ  279 (315)
Q Consensus       222 d~~i~~wd~~~~~~~~--~~~~~----------~~~i~~~~~~~~~~----------~l~s~~~d~~i~iwd~~~~~~~~  279 (315)
                      ++.+++|+........  ....+          ......+.+++++.          .+++...++.+.+||..+++.+.
T Consensus       233 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~~~d~~t~~~~~  312 (373)
T d2madh_         233 SGKILQADISAAGATNKAPIDALSGGRKADTWRPGGWQQVAYLKSSDGIYLLTSEQSAWKLHAAAKEVTSVTGLVGQTSS  312 (373)
T ss_pred             CceEEEEEcCCCeEEEEEeeccccCcEEeeeeccCcceeeEEecCCCeEEEecCCCceEEeecCCCeEEEEECCCCcEEE
Confidence            8899999987654321  11111          11223344555544          44556677889999999998887


Q ss_pred             cccccccceEEEEEeeCCCE--EEEEeCCCcEEEeec
Q 021247          280 SMTNHTDQVWGVSFRPLGGR--VVSVSDDKSISLYEY  314 (315)
Q Consensus       280 ~~~~~~~~v~~~~~s~~~~~--l~s~~~d~~i~i~~~  314 (315)
                      .+. +...+.+++|+|||+.  +++++.|++|+|||.
T Consensus       313 ~~~-~~~~~~~~a~spDG~~~l~vt~~~d~~v~v~D~  348 (373)
T d2madh_         313 QIS-LGHDVDAISVAQDGGPDLYALSAGTEVLHIYDA  348 (373)
T ss_pred             Eec-CCCCeeEEEECCCCCEEEEEEeCCCCeEEEEEC
Confidence            764 5567899999999985  468899999999996

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.88  E-value=6.2e-21  Score=157.12  Aligned_cols=260  Identities=14%  Similarity=0.074  Sum_probs=185.9

Q ss_pred             cccceEEEEEeecCCCCCcEEEEeeCCCcEEEEcCCCCcceeeccccc-----cceEEEEeCCCCCEEEEee--------
Q 021247           13 HEESVWAVTWVPATETRPALLLTGSLDETVKLWRPDDMQLERTNTGHC-----LGVVSVAAHPSGIIAASAS--------   79 (315)
Q Consensus        13 h~~~v~~v~~~~~~~~~~~~l~sgs~d~~v~~w~~~~~~~~~~~~~h~-----~~v~~~~~~~~g~~l~s~~--------   79 (315)
                      +...+.+++|+|+++.   ++++++.++.|.+||..++++......+.     ..+..+.++|++.+++++.        
T Consensus        32 ~~~~~~~i~~spDg~~---l~v~~~~~~~v~v~D~~t~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~l~~~~~~~~~~~~  108 (337)
T d1pbyb_          32 AGPTPMVPMVAPGGRI---AYATVNKSESLVKIDLVTGETLGRIDLSTPEERVKSLFGAALSPDGKTLAIYESPVRLELT  108 (337)
T ss_dssp             CTTCCCCEEECTTSSE---EEEEETTTTEEEEEETTTCCEEEEEECCBTTEEEECTTCEEECTTSSEEEEEEEEEEECSS
T ss_pred             CCCCccEEEECCCCCE---EEEEECCCCeEEEEECCCCcEEEEEecCCCcccccceeeEEEcCCCcEEEEeecCCcceee
Confidence            3456789999998752   45677889999999999988877654432     3455789999999888765        


Q ss_pred             ----CCCeEEEEECCCCceeEEeeCCcccEEEEEECCCCCeEEEEecCCCeEEEEecCCcceeeeecCCCCCCCCC----
Q 021247           80 ----LDSFVRVFDVDTNASIATLEASPSEVWQMQFDPKGTTLAVAGGGSASVKLWDTATWNLIATLSIPRPEGLKP----  151 (315)
Q Consensus        80 ----~d~~i~~w~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~----  151 (315)
                          .+..+.+||..++.....+... ..+..++++|+++.++++ +  +.+.+||..+++....+..........    
T Consensus       109 ~~~~~~~~~~~~d~~~~~~~~~~~~~-~~~~~~~~s~dg~~l~~~-~--~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~  184 (337)
T d1pbyb_         109 HFEVQPTRVALYDAETLSRRKAFEAP-RQITMLAWARDGSKLYGL-G--RDLHVMDPEAGTLVEDKPIQSWEAETYAQPD  184 (337)
T ss_dssp             CEEECCCEEEEEETTTTEEEEEEECC-SSCCCEEECTTSSCEEEE-S--SSEEEEETTTTEEEEEECSTTTTTTTBCCCB
T ss_pred             eccccccceeeccccCCeEEEecccc-CCceEEEEcCCCCEEEEE-c--CCcceeeeecCcEEEEeecCCccccceecCC
Confidence                4678999999999888777654 456788999999987654 3  457889999888777765432211100    


Q ss_pred             ------CccCCCCcceEEEEECCCCCEEEEecCCCcEEEEEcccceeee-eecCCccceEEEEEcCCCCcEEEEEeCCCe
Q 021247          152 ------TDKSSSKKFVLSVAWSPDGRRIACGSMDGTISVFDVTRAKFLH-HLEGHFMPVRSLVYSPVDPRVLFSASDDTH  224 (315)
Q Consensus       152 ------~~~~~~~~~i~~~~~~~~~~~l~~~s~dg~i~i~d~~~~~~~~-~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~  224 (315)
                            .....+...........+......+..++.+.+||+.++.... ....+...+..+.++| +..+++.+  ++.
T Consensus       185 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~--~~~  261 (337)
T d1pbyb_         185 VLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMREVRIMDVFYFSTAVNP-AKTRAFGA--YNV  261 (337)
T ss_dssp             CCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECT-TSSEEEEE--ESE
T ss_pred             cceeeccccccceeeeeeeeeeeccceeeecccCccEEEEEcCCCcEEEEEecCCCcceEEEEecc-cceEEEEc--ccc
Confidence                  0000111111222223334444455567789999998877543 3445666778888888 44555544  589


Q ss_pred             EEEEeCCCCeeEEEeecccccEEEEEEcCCCCeEEEEeCCCcEEEEecCccceehcccc
Q 021247          225 VHMYDAEGKSLVTAMSGHASWVLSVDASPDGAAITTGSSDRTVKLWDLNMRAAMQSMTN  283 (315)
Q Consensus       225 i~~wd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~  283 (315)
                      |++||.++++.+..+. +...+.+++|+|+|++|++++.|++|++||.++++.+.++..
T Consensus       262 i~v~d~~~~~~~~~~~-~~~~~~~~~~s~dG~~l~v~~~~~~i~v~D~~t~~~v~~i~~  319 (337)
T d1pbyb_         262 LESFDLEKNASIKRVP-LPHSYYSVNVSTDGSTVWLGGALGDLAAYDAETLEKKGQVDL  319 (337)
T ss_dssp             EEEEETTTTEEEEEEE-CSSCCCEEEECTTSCEEEEESBSSEEEEEETTTCCEEEEEEC
T ss_pred             EEEEECCCCcEEEEEc-CCCCEEEEEECCCCCEEEEEeCCCcEEEEECCCCcEEEEEEC
Confidence            9999999998887765 456688999999999999999999999999999888877654

>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.88  E-value=1.3e-20  Score=161.22  Aligned_cols=199  Identities=10%  Similarity=0.037  Sum_probs=148.1

Q ss_pred             CCCCCEEEEeeCCCeEEEEECCCCceeEEeeCCcccEEEEEECCCCCeEEEEecCCCeEEEEecCCcceeeeecCCCCCC
Q 021247           69 HPSGIIAASASLDSFVRVFDVDTNASIATLEASPSEVWQMQFDPKGTTLAVAGGGSASVKLWDTATWNLIATLSIPRPEG  148 (315)
Q Consensus        69 ~~~g~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~  148 (315)
                      ++...++++.+.|++|.+||..+++.+..+..+ ..+..++|+|+|++++ +++.|+++++||+.+.+......++..  
T Consensus        29 ~~~~~~~v~~~d~g~v~v~D~~t~~v~~~~~~g-~~~~~v~fSpDG~~l~-~~s~dg~v~~~d~~t~~~~~~~~i~~~--  104 (432)
T d1qksa2          29 DLENLFSVTLRDAGQIALIDGSTYEIKTVLDTG-YAVHISRLSASGRYLF-VIGRDGKVNMIDLWMKEPTTVAEIKIG--  104 (432)
T ss_dssp             CGGGEEEEEETTTTEEEEEETTTCCEEEEEECS-SCEEEEEECTTSCEEE-EEETTSEEEEEETTSSSCCEEEEEECC--
T ss_pred             CCCcEEEEEEcCCCEEEEEECCCCcEEEEEeCC-CCeeEEEECCCCCEEE-EEcCCCCEEEEEeeCCCceEEEEEecC--
Confidence            344456789999999999999999999999876 4689999999999875 457899999999987664332222111  


Q ss_pred             CCCCccCCCCcceEEEEECCCCCEE-EEecCCCcEEEEEcccceeeeeecCC-----------ccceEEEEEcCCCCcEE
Q 021247          149 LKPTDKSSSKKFVLSVAWSPDGRRI-ACGSMDGTISVFDVTRAKFLHHLEGH-----------FMPVRSLVYSPVDPRVL  216 (315)
Q Consensus       149 ~~~~~~~~~~~~i~~~~~~~~~~~l-~~~s~dg~i~i~d~~~~~~~~~~~~~-----------~~~v~~~~~~~~~~~~l  216 (315)
                            ..+...+.+..|+|||++| ++++.++.+++||..+++.+..+..+           ......+.++|++..++
T Consensus       105 ------~~~~~~~~s~~~SpDG~~l~vs~~~~~~v~i~d~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~~~  178 (432)
T d1qksa2         105 ------SEARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFI  178 (432)
T ss_dssp             ------SEEEEEEECCSTTCTTTEEEEEEEETTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEE
T ss_pred             ------CCCCCeEEecccCCCCCEEEEEcCCCCeEEEEeCccccceeeeccCCccccceeccCCCceeEEEECCCCCEEE
Confidence                  1223345556778899986 67888999999999999887765543           23456788898777777


Q ss_pred             EEEeCCCeEEEEeCCCCeeEEEe-ecccccEEEEEEcCCCCeEEEEeCC-CcEEEEecCccce
Q 021247          217 FSASDDTHVHMYDAEGKSLVTAM-SGHASWVLSVDASPDGAAITTGSSD-RTVKLWDLNMRAA  277 (315)
Q Consensus       217 ~s~~~d~~i~~wd~~~~~~~~~~-~~~~~~i~~~~~~~~~~~l~s~~~d-~~i~iwd~~~~~~  277 (315)
                      ++...++.|.+||....+..... ..+...+..++++|+|+++++++.+ +.+.++|...++.
T Consensus       179 vs~~~~~~i~~~d~~~~~~~~~~~i~~g~~~~~~~~spdg~~~~va~~~~~~v~v~d~~~~~~  241 (432)
T d1qksa2         179 VNVKETGKILLVDYTDLNNLKTTEISAERFLHDGGLDGSHRYFITAANARNKLVVIDTKEGKL  241 (432)
T ss_dssp             EEETTTTEEEEEETTCSSEEEEEEEECCSSEEEEEECTTSCEEEEEEGGGTEEEEEETTTTEE
T ss_pred             EEEccCCeEEEEEccCCCcceEEEEcccCccccceECCCCCEEEEeccccceEEEeecccceE
Confidence            88888999999998876544332 2345668899999999987666654 4688888765443

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.84  E-value=3.3e-19  Score=148.15  Aligned_cols=257  Identities=16%  Similarity=0.156  Sum_probs=175.2

Q ss_pred             eCCCcEEEEcCCCCcceeeccccccceEEEEeCCCCCEEEEe----------eCCCeEEEEECCCCceeEEeeCCcc---
Q 021247           37 SLDETVKLWRPDDMQLERTNTGHCLGVVSVAAHPSGIIAASA----------SLDSFVRVFDVDTNASIATLEASPS---  103 (315)
Q Consensus        37 s~d~~v~~w~~~~~~~~~~~~~h~~~v~~~~~~~~g~~l~s~----------~~d~~i~~w~~~~~~~~~~~~~~~~---  103 (315)
                      +.++.|.+||..+.++...+..+..+  .++|+|+|++|+.+          ..|+.|++||..+++.+..+..+..   
T Consensus        25 ~~~~~v~v~D~~tg~~~~~~~~g~~~--~~a~SpDg~~l~v~~~~~~~~~~g~~d~~v~v~D~~t~~~~~~~~~~~~~~~  102 (355)
T d2bbkh_          25 AAVTQQFVIDGEAGRVIGMIDGGFLP--NPVVADDGSFIAHASTVFSRIARGERTDYVEVFDPVTLLPTADIELPDAPRF  102 (355)
T ss_dssp             CSSEEEEEEETTTTEEEEEEEECSSC--EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCC
T ss_pred             CCcCeEEEEECCCCcEEEEEECCCCC--ceEEcCCCCEEEEEeCCCccccccCCCCEEEEEECCCCCEEEEEecCCccee
Confidence            34667999999999888777655443  68999999987754          3478999999999988776643322   


Q ss_pred             ----cEEEEEECCCCCeEEEEe-cCCCeEEEEecCCcceeeeecCCCCCC----------------C----------C--
Q 021247          104 ----EVWQMQFDPKGTTLAVAG-GGSASVKLWDTATWNLIATLSIPRPEG----------------L----------K--  150 (315)
Q Consensus       104 ----~v~~~~~~~~~~~~~~~~-~~d~~i~~~d~~~~~~~~~~~~~~~~~----------------~----------~--  150 (315)
                          ....+.|+|+++.+++.. +.+..+.+||..+++.+..+..+....                .          .  
T Consensus       103 ~~~~~~~~~~~s~dg~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~~~~v~~~~~~~~~  182 (355)
T d2bbkh_         103 LVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDVPDCYHIFPTAPDTFFMHCRDGSLAKVAFGTEGTPE  182 (355)
T ss_dssp             CBSCCGGGEEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCSEEEEEEEETTEEEEEETTSCEEEEECCSSSCCE
T ss_pred             ecCCCCceEEEecCCCeeEEecCCCCceeeeeecCCCcEeeEEecCCcceEeecCCcceEEEcCCCCEEEEEecCCCeEE
Confidence                234578999999876654 456789999999887766544321100                0          0  


Q ss_pred             ----CCccCCCCcceEEEEECCCCCEEEEecCCCcEEEEEcccceee--eeecCCc----------cceEEEEEcCCCCc
Q 021247          151 ----PTDKSSSKKFVLSVAWSPDGRRIACGSMDGTISVFDVTRAKFL--HHLEGHF----------MPVRSLVYSPVDPR  214 (315)
Q Consensus       151 ----~~~~~~~~~~i~~~~~~~~~~~l~~~s~dg~i~i~d~~~~~~~--~~~~~~~----------~~v~~~~~~~~~~~  214 (315)
                          ......+...+....+.+++..++.++.++.+++|++..++..  .....+.          .....++++|++..
T Consensus       183 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~d~~~  262 (355)
T d2bbkh_         183 ITHTEVFHPEDEFLINHPAYSQKAGRLVWPTYTGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYHRALDR  262 (355)
T ss_dssp             EEECCCCSCTTSCBCSCCEEETTTTEEEEEBTTSEEEEEECTTSSCEECCCEESSCHHHHHTTEEECSSSCEEEETTTTE
T ss_pred             EEecccccceecceeeeccccCCCCeEEEecCCCeEEEEecCCCcEEEEeccCCcccceEeeeeeccceEEEEEeCCCCe
Confidence                0001112223445677778888888899999999999776532  1111111          12234677875444


Q ss_pred             EEEEEeCC---------CeEEEEeCCCCeeEEEeecccccEEEEEEcCCCC--eEEEEeCCCcEEEEecCccceehcccc
Q 021247          215 VLFSASDD---------THVHMYDAEGKSLVTAMSGHASWVLSVDASPDGA--AITTGSSDRTVKLWDLNMRAAMQSMTN  283 (315)
Q Consensus       215 ~l~s~~~d---------~~i~~wd~~~~~~~~~~~~~~~~i~~~~~~~~~~--~l~s~~~d~~i~iwd~~~~~~~~~~~~  283 (315)
                      ++++....         ..|.+||..+++.+..+.. ...+.+++|+|+|+  ++++++.|++|++||+++++.++++.+
T Consensus       263 ~~~~~~~~~~~~~~~~~~~v~v~d~~t~~~~~~~~~-~~~~~~~a~spDG~~~l~v~~~~d~~i~v~D~~tg~~~~~i~~  341 (355)
T d2bbkh_         263 IYLLVDQRDEWRHKTASRFVVVLDAKTGERLAKFEM-GHEIDSINVSQDEKPLLYALSTGDKTLYIHDAESGEELRSVNQ  341 (355)
T ss_dssp             EEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEE-EEEECEEEECCSSSCEEEEEETTTTEEEEEETTTCCEEEEECC
T ss_pred             EEEEeccCCceeecCCCCeEEEEeCCCCcEEEEecC-CCCEEEEEEcCCCCeEEEEEECCCCEEEEEECCCCCEEEEEeC
Confidence            44433322         4799999999888776653 34578999999997  457778899999999999999988877


Q ss_pred             cccceEEEEEeeC
Q 021247          284 HTDQVWGVSFRPL  296 (315)
Q Consensus       284 ~~~~v~~~~~s~~  296 (315)
                      +......+.+.++
T Consensus       342 ~G~~p~~i~~~d~  354 (355)
T d2bbkh_         342 LGHGPQVITTADM  354 (355)
T ss_dssp             CCSSCCEEECCCC
T ss_pred             cCCCccEEEeCCC
Confidence            7665555655544

>d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]

Probab=99.81  E-value=1.1e-16  Score=133.61  Aligned_cols=262  Identities=11%  Similarity=-0.025  Sum_probs=178.9

Q ss_pred             EEEEEeecCCCCCcEEEEee----------CCCcEEEEcCCCCcceeeccccccce-------EEEEeCCCCCEEEEe--
Q 021247           18 WAVTWVPATETRPALLLTGS----------LDETVKLWRPDDMQLERTNTGHCLGV-------VSVAAHPSGIIAASA--   78 (315)
Q Consensus        18 ~~v~~~~~~~~~~~~l~sgs----------~d~~v~~w~~~~~~~~~~~~~h~~~v-------~~~~~~~~g~~l~s~--   78 (315)
                      ..++|+|++.    +|++++          .++.|.+||..+.+.......+....       ..+.++++++.++..  
T Consensus        69 ~~~a~SpDG~----~l~va~~~~~~~~~~~~~~~v~v~D~~t~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~  144 (373)
T d2madh_          69 PNPVAAHSGS----EFALASTSFSRIAKGKRTDYVEVFDPVTFLPIADIELPDAPRFDVGPYSWMNANTPNNADLLFFQF  144 (373)
T ss_pred             ccEEEcCCCC----EEEEEeecCCcccccccceEEEEEECCCCcEEEEEecCCcceeEeccCCCcEEEEeCCCcEEEEEE
Confidence            3789999886    466553          46889999999988877665554433       346777888755443  


Q ss_pred             eCCCeEEEEECCCCceeEEeeCCcccEEEEEECCCCCeEEEEecCCCeEEEEecCCcceeeeecCCCCCCCCCCccCCCC
Q 021247           79 SLDSFVRVFDVDTNASIATLEASPSEVWQMQFDPKGTTLAVAGGGSASVKLWDTATWNLIATLSIPRPEGLKPTDKSSSK  158 (315)
Q Consensus        79 ~~d~~i~~w~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~  158 (315)
                      ..++.+.+|+....+......    ....+.++|+++.++++...|+.+.+||....+...........       ....
T Consensus       145 ~~~~~~~~~~~~~~~~~~~~~----~~~~~~~s~~g~~~~v~~~~dg~~~~~~~~~~~~~~~~~~~~~~-------~~~~  213 (373)
T d2madh_         145 AAGPAVGLVVQGGSSDDQLLS----SPTCYHIHPGAPSTFYLLCAQGGLAKTDHAGGAAGAGLVGAMLT-------AAQN  213 (373)
T ss_pred             cCCCceEEeeccCCeEEEEec----cceeEEEecCCCcEEEEEcCCCeEEEEEcCCceeeEEEeeeccc-------cCcc
Confidence            445678888887766544433    34577899999988888999999999999887665544221110       0111


Q ss_pred             cceEEEEECCCCCEEEEecCCCcEEEEEcccceeee--eecCCcc----------ceEEEEEcCC---------CCcEEE
Q 021247          159 KFVLSVAWSPDGRRIACGSMDGTISVFDVTRAKFLH--HLEGHFM----------PVRSLVYSPV---------DPRVLF  217 (315)
Q Consensus       159 ~~i~~~~~~~~~~~l~~~s~dg~i~i~d~~~~~~~~--~~~~~~~----------~v~~~~~~~~---------~~~~l~  217 (315)
                      .......+.+++. ++..+.++.+.+|+........  ....+..          ....+.++|+         ++..++
T Consensus       214 ~~~~~~~~~~~~~-~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~  292 (373)
T d2madh_         214 LLTQPAQANKSGR-IVWPVYSGKILQADISAAGATNKAPIDALSGGRKADTWRPGGWQQVAYLKSSDGIYLLTSEQSAWK  292 (373)
T ss_pred             ceeeeEEECCCce-EEEecCCceEEEEEcCCCeEEEEEeeccccCcEEeeeeccCcceeeEEecCCCeEEEecCCCceEE
Confidence            2234455666554 4455678889999887654321  1111111          1223344442         223445


Q ss_pred             EEeCCCeEEEEeCCCCeeEEEeecccccEEEEEEcCCCC--eEEEEeCCCcEEEEecCccceehcccccccceEEEEEee
Q 021247          218 SASDDTHVHMYDAEGKSLVTAMSGHASWVLSVDASPDGA--AITTGSSDRTVKLWDLNMRAAMQSMTNHTDQVWGVSFRP  295 (315)
Q Consensus       218 s~~~d~~i~~wd~~~~~~~~~~~~~~~~i~~~~~~~~~~--~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~  295 (315)
                      +...++.+.+||..+++.+..+. +...+..++|+|||+  ++++++.|++|++||+.+++.++++..+....+.+++.+
T Consensus       293 ~~~~~~~v~~~d~~t~~~~~~~~-~~~~~~~~a~spDG~~~l~vt~~~d~~v~v~D~~tg~~~~~~~~~g~~P~~l~~~~  371 (373)
T d2madh_         293 LHAAAKEVTSVTGLVGQTSSQIS-LGHDVDAISVAQDGGPDLYALSAGTEVLHIYDAGAGDQDQSTVELGSGPQVLSVMN  371 (373)
T ss_pred             eecCCCeEEEEECCCCcEEEEec-CCCCeeEEEECCCCCEEEEEEeCCCCeEEEEECCCCCEEEEECCCCCCCcEEEEec
Confidence            56677889999999988877664 556789999999998  457899999999999999999999988877778887754


Q ss_pred             C
Q 021247          296 L  296 (315)
Q Consensus       296 ~  296 (315)
                      .
T Consensus       372 ~  372 (373)
T d2madh_         372 E  372 (373)
T ss_pred             C
Confidence            3

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

Probab=99.81  E-value=5.9e-18  Score=139.51  Aligned_cols=265  Identities=14%  Similarity=0.101  Sum_probs=176.1

Q ss_pred             ccccceEEEEEeecCCCCCcEEEEeeCCCcEEEEcCCCCcceeeccc------cccceEEEEeCCCCCEEEEee------
Q 021247           12 AHEESVWAVTWVPATETRPALLLTGSLDETVKLWRPDDMQLERTNTG------HCLGVVSVAAHPSGIIAASAS------   79 (315)
Q Consensus        12 ~h~~~v~~v~~~~~~~~~~~~l~sgs~d~~v~~w~~~~~~~~~~~~~------h~~~v~~~~~~~~g~~l~s~~------   79 (315)
                      .|...+.+++|+|++..   ++++++.++.|++||..+.+.......      +...+..+.++|+|.+++.++      
T Consensus        37 ~~~~~p~~l~~spDG~~---l~v~~~~~~~v~~~d~~t~~~~~~~~~~~~~~~~~~~~~~v~~s~DG~~l~v~~~~~~~~  113 (346)
T d1jmxb_          37 PDKFGPGTAMMAPDNRT---AYVLNNHYGDIYGIDLDTCKNTFHANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRL  113 (346)
T ss_dssp             SSCCSSCEEEECTTSSE---EEEEETTTTEEEEEETTTTEEEEEEESCCSTTEEEECSSCEEECTTSSEEEEEEEEEEEC
T ss_pred             CCCCCcceEEECCCCCE---EEEEECCCCcEEEEeCccCeeeeeecccccccccCCceEEEEEecCCCEEEEEecCCcce
Confidence            45667889999998753   457777899999999998877654422      223466889999999887664      


Q ss_pred             ------CCCeEEEEECCCCceeEEeeC--CcccEEEEEECCCCCeEEEEecCCCeEEEEecCCcceeeeecCCCCCC---
Q 021247           80 ------LDSFVRVFDVDTNASIATLEA--SPSEVWQMQFDPKGTTLAVAGGGSASVKLWDTATWNLIATLSIPRPEG---  148 (315)
Q Consensus        80 ------~d~~i~~w~~~~~~~~~~~~~--~~~~v~~~~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~---  148 (315)
                            .+..+.+|+..+++....+..  .+..+..+.+++++. +++.   +..+.+||..+++.+..+.......   
T Consensus       114 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~  189 (346)
T d1jmxb_         114 NDHYVVKPPRLEVFSTADGLEAKPVRTFPMPRQVYLMRAADDGS-LYVA---GPDIYKMDVKTGKYTVALPLRNWNRKGY  189 (346)
T ss_dssp             SSCEEECCCEEEEEEGGGGGGBCCSEEEECCSSCCCEEECTTSC-EEEE---SSSEEEECTTTCCEEEEECSTTCCCTTB
T ss_pred             eeeeccCcceEEEEecccceeeeEEEeeeccCceEEEEecCCCE-EEEe---CCcceEEEccCCCEEEEEecCCCccceE
Confidence                  477889999887665433221  233445556666665 3343   3568999999888877765432110   


Q ss_pred             CCCCc-----cCCCCcce----EEEEECCCCCEEEEecCCCcEEEEEcccceeee-eecCCccceEEEEEcCCCCcEEEE
Q 021247          149 LKPTD-----KSSSKKFV----LSVAWSPDGRRIACGSMDGTISVFDVTRAKFLH-HLEGHFMPVRSLVYSPVDPRVLFS  218 (315)
Q Consensus       149 ~~~~~-----~~~~~~~i----~~~~~~~~~~~l~~~s~dg~i~i~d~~~~~~~~-~~~~~~~~v~~~~~~~~~~~~l~s  218 (315)
                      ..+..     .......+    ....+.+....++++..+..+.+||+.++.... ....+...+..+.+++.+..+ +.
T Consensus       190 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~  268 (346)
T d1jmxb_         190 SAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSVDLKTGKTHTQEFADLTELYFTGLRSPKDPNQ-IY  268 (346)
T ss_dssp             CCCBCCCCCCCCCTTCEEEEEEEEEEC-------CCCEEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECSSCTTE-EE
T ss_pred             EeccccEEEEEecCCCceEeeeeeeeeccCceeEeeccCCceEEEEECCCCceEEEEeecccceeEEEEEeCCCCEE-EE
Confidence            00000     00001111    111222334455566667789999998776544 345677788888999866544 44


Q ss_pred             EeCCCeEEEEeCCCCeeEEEeecccccEEEEEEcCCCCeEEEEeCCCcEEEEecCccceehccccccc
Q 021247          219 ASDDTHVHMYDAEGKSLVTAMSGHASWVLSVDASPDGAAITTGSSDRTVKLWDLNMRAAMQSMTNHTD  286 (315)
Q Consensus       219 ~~~d~~i~~wd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~  286 (315)
                      .. ++.|.+||..+++.+.... +...+.+++|+|||++|++++.|+.|++||.++++.+.++..+.+
T Consensus       269 ~~-~~~v~v~d~~~~~~~~~~~-~~~~~~~va~s~DG~~l~v~~~d~~v~v~D~~t~~~i~~i~~p~g  334 (346)
T d1jmxb_         269 GV-LNRLAKYDLKQRKLIKAAN-LDHTYYCVAFDKKGDKLYLGGTFNDLAVFNPDTLEKVKNIKLPGG  334 (346)
T ss_dssp             EE-ESEEEEEETTTTEEEEEEE-CSSCCCEEEECSSSSCEEEESBSSEEEEEETTTTEEEEEEECSSS
T ss_pred             ec-CCeEEEEECCCCcEEEEEc-CCCCEEEEEEcCCCCEEEEEeCCCcEEEEECccCCEEEEEECCCC
Confidence            33 4579999999998877665 345688999999999999999999999999999998888765443

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.79  E-value=7.7e-18  Score=139.73  Aligned_cols=239  Identities=14%  Similarity=0.110  Sum_probs=164.2

Q ss_pred             EEeCCCCCEEEEe-----eCCCeEEEEECCCCceeEEeeCCcccEEEEEECCCCCeEEEEe---------cCCCeEEEEe
Q 021247           66 VAAHPSGIIAASA-----SLDSFVRVFDVDTNASIATLEASPSEVWQMQFDPKGTTLAVAG---------GGSASVKLWD  131 (315)
Q Consensus        66 ~~~~~~g~~l~s~-----~~d~~i~~w~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~---------~~d~~i~~~d  131 (315)
                      .+.+|+|..++..     ..+.++.+||..+++.+.++..+..+  .++|+|+++.++++.         ..++.|.+||
T Consensus         7 ~a~spdg~~~~v~~~~~~~~~~~v~v~D~~tg~~~~~~~~g~~~--~~a~SpDg~~l~v~~~~~~~~~~g~~d~~v~v~D   84 (355)
T d2bbkh_           7 EAPAPDARRVYVNDPAHFAAVTQQFVIDGEAGRVIGMIDGGFLP--NPVVADDGSFIAHASTVFSRIARGERTDYVEVFD   84 (355)
T ss_dssp             CCCCCCTTEEEEEECGGGCSSEEEEEEETTTTEEEEEEEECSSC--EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEEC
T ss_pred             EeeCCCCCEEEEEecccCCCcCeEEEEECCCCcEEEEEECCCCC--ceEEcCCCCEEEEEeCCCccccccCCCCEEEEEE
Confidence            3568999887654     34567999999999988888765544  689999999887653         3478999999


Q ss_pred             cCCcceeeeecCCCCCCCCCCccCCCCcceEEEEECCCCCEEEEe--cCCCcEEEEEcccceeeeeecCCcc--------
Q 021247          132 TATWNLIATLSIPRPEGLKPTDKSSSKKFVLSVAWSPDGRRIACG--SMDGTISVFDVTRAKFLHHLEGHFM--------  201 (315)
Q Consensus       132 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~--s~dg~i~i~d~~~~~~~~~~~~~~~--------  201 (315)
                      +.+++.+..+..+.....      ........++|+|++++++..  +.+..+.+||..+++.+..+..+..        
T Consensus        85 ~~t~~~~~~~~~~~~~~~------~~~~~~~~~~~s~dg~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  158 (355)
T d2bbkh_          85 PVTLLPTADIELPDAPRF------LVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDVPDCYHIFPTAP  158 (355)
T ss_dssp             TTTCCEEEEEEETTCCCC------CBSCCGGGEEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCSEEEEEEEET
T ss_pred             CCCCCEEEEEecCCccee------ecCCCCceEEEecCCCeeEEecCCCCceeeeeecCCCcEeeEEecCCcceEeecCC
Confidence            999988877755432211      011123468899999987665  4566799999987776544322110        


Q ss_pred             -------------------------------------ceEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCeeEE--Eeecc
Q 021247          202 -------------------------------------PVRSLVYSPVDPRVLFSASDDTHVHMYDAEGKSLVT--AMSGH  242 (315)
Q Consensus       202 -------------------------------------~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~--~~~~~  242 (315)
                                                           .+....+.+ ++..++.++.++.+++|+...+....  ....+
T Consensus       159 ~~~~~~~~dg~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~  237 (355)
T d2bbkh_         159 DTFFMHCRDGSLAKVAFGTEGTPEITHTEVFHPEDEFLINHPAYSQ-KAGRLVWPTYTGKIHQIDLSSGDAKFLPAVEAL  237 (355)
T ss_dssp             TEEEEEETTSCEEEEECCSSSCCEEEECCCCSCTTSCBCSCCEEET-TTTEEEEEBTTSEEEEEECTTSSCEECCCEESS
T ss_pred             cceEEEcCCCCEEEEEecCCCeEEEEecccccceecceeeeccccC-CCCeEEEecCCCeEEEEecCCCcEEEEeccCCc
Confidence                                                 111223333 34567777889999999987664322  11111


Q ss_pred             ----------cccEEEEEEcCCCCeEEEEeCC----------CcEEEEecCccceehcccccccceEEEEEeeCCCE--E
Q 021247          243 ----------ASWVLSVDASPDGAAITTGSSD----------RTVKLWDLNMRAAMQSMTNHTDQVWGVSFRPLGGR--V  300 (315)
Q Consensus       243 ----------~~~i~~~~~~~~~~~l~s~~~d----------~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~--l  300 (315)
                                ......+++++++..++....+          ..|.+||..+++.+.++.. ...+.+++|+|||+.  +
T Consensus       238 ~~~~~~~~~~p~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~v~d~~t~~~~~~~~~-~~~~~~~a~spDG~~~l~  316 (355)
T d2bbkh_         238 TEAERADGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGERLAKFEM-GHEIDSINVSQDEKPLLY  316 (355)
T ss_dssp             CHHHHHTTEEECSSSCEEEETTTTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEE-EEEECEEEECCSSSCEEE
T ss_pred             ccceEeeeeeccceEEEEEeCCCCeEEEEeccCCceeecCCCCeEEEEeCCCCcEEEEecC-CCCEEEEEEcCCCCeEEE
Confidence                      1122347888888877665443          3699999999888877653 456889999999973  4


Q ss_pred             EEEeCCCcEEEeec
Q 021247          301 VSVSDDKSISLYEY  314 (315)
Q Consensus       301 ~s~~~d~~i~i~~~  314 (315)
                      ++++.|++|+|||.
T Consensus       317 v~~~~d~~i~v~D~  330 (355)
T d2bbkh_         317 ALSTGDKTLYIHDA  330 (355)
T ss_dssp             EEETTTTEEEEEET
T ss_pred             EEECCCCEEEEEEC
Confidence            67778999999996

>d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Putative isomerase YbhE
family: Putative isomerase YbhE
domain: Putative isomerase YbhE
species: Escherichia coli [TaxId: 562]

Probab=99.78  E-value=5.8e-17  Score=132.99  Aligned_cols=252  Identities=9%  Similarity=0.118  Sum_probs=168.1

Q ss_pred             ccccceEEEEEeecCCCCCcEEEEeeCCCcEEEEcCCCCcceeecc---ccccceEEEEeCCCCCEEEEeeC-CCeEEEE
Q 021247           12 AHEESVWAVTWVPATETRPALLLTGSLDETVKLWRPDDMQLERTNT---GHCLGVVSVAAHPSGIIAASASL-DSFVRVF   87 (315)
Q Consensus        12 ~h~~~v~~v~~~~~~~~~~~~l~sgs~d~~v~~w~~~~~~~~~~~~---~h~~~v~~~~~~~~g~~l~s~~~-d~~i~~w   87 (315)
                      .|...|..++|+|+++.   +++++..|+.|++|+.+.........   .+...+..++++|+|+++++++. ++.+++|
T Consensus        34 ~~~~~v~~la~spDG~~---L~v~~~~d~~i~~~~i~~~~~~~~~~~~~~~~~~p~~l~~spDg~~l~v~~~~~~~v~~~  110 (333)
T d1ri6a_          34 DVPGQVQPMVVSPDKRY---LYVGVRPEFRVLAYRIAPDDGALTFAAESALPGSLTHISTDHQGQFVFVGSYNAGNVSVT  110 (333)
T ss_dssp             ECSSCCCCEEECTTSSE---EEEEETTTTEEEEEEECTTTCCEEEEEEEECSSCCSEEEECTTSSEEEEEETTTTEEEEE
T ss_pred             cCCCCEeEEEEeCCCCE---EEEEECCCCeEEEEEEeCCCCcEEEeeecccCCCceEEEEcCCCCEEeecccCCCceeee
Confidence            67789999999998763   33555568999999876544322221   23345678999999998888774 6789999


Q ss_pred             ECCCCceeEE--eeCCcccEEEEEECCCCCeEEEEecCCCeEEEEecCCcceeeeecCCCCCCCCCCccCCCCcceEEEE
Q 021247           88 DVDTNASIAT--LEASPSEVWQMQFDPKGTTLAVAGGGSASVKLWDTATWNLIATLSIPRPEGLKPTDKSSSKKFVLSVA  165 (315)
Q Consensus        88 ~~~~~~~~~~--~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~  165 (315)
                      +.........  ...+...+.++.++|+++.++.....+..+.+|+...............       ..........++
T Consensus       111 ~~~~~~~~~~~~~~~~~~~~~~v~~s~d~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~-------~~~~g~~p~~i~  183 (333)
T d1ri6a_         111 RLEDGLPVGVVDVVEGLDGCHSANISPDNRTLWVPALKQDRICLFTVSDDGHLVAQDPAEV-------TTVEGAGPRHMV  183 (333)
T ss_dssp             EEETTEEEEEEEEECCCTTBCCCEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEEE-------ECSTTCCEEEEE
T ss_pred             ccccccceecccccCCCccceEEEeeecceeeeccccccceeeEEEeccCCcceeeeceee-------eeecCCCccEEE
Confidence            9877654433  3445556778899999998888777788999999876433222111000       001122357899


Q ss_pred             ECCCCCEEEE-ecCCCcEEEEEcccce----eeeeec------CCccceEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCe
Q 021247          166 WSPDGRRIAC-GSMDGTISVFDVTRAK----FLHHLE------GHFMPVRSLVYSPVDPRVLFSASDDTHVHMYDAEGKS  234 (315)
Q Consensus       166 ~~~~~~~l~~-~s~dg~i~i~d~~~~~----~~~~~~------~~~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~  234 (315)
                      |++++..++. ....+...+++.....    ......      ........+.+++++..+++++..++.+.+|+.....
T Consensus       184 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~~~~~~~~~~~~~~~~~~~~~  263 (333)
T d1ri6a_         184 FHPNEQYAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHITPDGRHLYACDRTASLITVFSVSEDG  263 (333)
T ss_dssp             ECTTSSEEEEEETTTTEEEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTS
T ss_pred             EeccceeEEeeccccCceEEEeecccccceeeeeeeeeeecCCCccccceeEEEecccCceeeecccCCeEEEEEEcCCC
Confidence            9999887754 4566677888764321    111111      1233456788898666667777788999999876443


Q ss_pred             eE---EEeecccccEEEEEEcCCCCeEEEEe-CCCcEEEEecC
Q 021247          235 LV---TAMSGHASWVLSVDASPDGAAITTGS-SDRTVKLWDLN  273 (315)
Q Consensus       235 ~~---~~~~~~~~~i~~~~~~~~~~~l~s~~-~d~~i~iwd~~  273 (315)
                      ..   .........+.+++|+|+|++|++++ .++.|++|+++
T Consensus       264 ~~~~~~~~~~~~~~p~~~a~spDGk~l~va~~~~~~v~v~~id  306 (333)
T d1ri6a_         264 SVLSKEGFQPTETQPRGFNVDHSGKYLIAAGQKSHHISVYEIV  306 (333)
T ss_dssp             CCEEEEEEEECSSSCCCEEECTTSSEEEEECTTTCEEEEEEEE
T ss_pred             CEEEEEEEeCCCCCeeEEEEeCCCCEEEEEECCCCeEEEEEEE
Confidence            22   22233445677899999999877665 46889999654

>d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.73  E-value=2.8e-17  Score=137.41  Aligned_cols=282  Identities=12%  Similarity=0.018  Sum_probs=177.4

Q ss_pred             hhccccceEEEEEeecCCCCCcEEEEeeCCCc--EEEEcCCCCcceeeccccccceEEEEeCCCCCEEEEee--------
Q 021247           10 ENAHEESVWAVTWVPATETRPALLLTGSLDET--VKLWRPDDMQLERTNTGHCLGVVSVAAHPSGIIAASAS--------   79 (315)
Q Consensus        10 ~~~h~~~v~~v~~~~~~~~~~~~l~sgs~d~~--v~~w~~~~~~~~~~~~~h~~~v~~~~~~~~g~~l~s~~--------   79 (315)
                      ..+++.+...++..+++.. ..+.++...++.  |.+||.++.+......++..+  .+.++|+|+.++.++        
T Consensus        15 ~~~~~g~~~~~a~~~~~~~-~~v~~~~~~~g~~~~~~~d~~~~~~~~~~~~~~~~--~~a~spDg~~i~~~~~~~~~~~~   91 (368)
T d1mdah_          15 AAASDGSSCDHGPGAISRR-SHITLPAYFAGTTENWVSCAGCGVTLGHSLGAFLS--LAVAGHSGSDFALASTSFARSAK   91 (368)
T ss_dssp             TTCCCCCCBCCCCCCCTTE-EEEEECTTTCSSEEEEEEETTTTEEEEEEEECTTC--EEEECTTSSCEEEEEEEETTTTS
T ss_pred             ccccCCCccccccCCCCcc-eeEEeeccCCCcceEEEEeCCCCcEEEEEeCCCCC--cceECCCCCEEEEEcccCccccc
Confidence            3456666666666665431 112334555665  556688888877776655544  578999999887654        


Q ss_pred             --CCCeEEEEECCCCceeEEeeCCcc-------cEEEEEECCCCCeEEEEecCCCeEEEEecCCcceeeeecCCCCCCCC
Q 021247           80 --LDSFVRVFDVDTNASIATLEASPS-------EVWQMQFDPKGTTLAVAGGGSASVKLWDTATWNLIATLSIPRPEGLK  150 (315)
Q Consensus        80 --~d~~i~~w~~~~~~~~~~~~~~~~-------~v~~~~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~  150 (315)
                        .|++|++||..+++.+..+..+..       ....++|+|+|++++++...++.+.+||+.+.+....+..+....  
T Consensus        92 g~~d~~v~v~D~~t~~~~~~i~~p~~~~~~~g~~p~~~a~SpDGk~l~va~~~~~~v~~~d~~~~~~~~~~~~~~~~~--  169 (368)
T d1mdah_          92 GKRTDYVEVFDPVTFLPIADIELPDAPRFSVGPRVHIIGNCASSACLLFFLFGSSAAAGLSVPGASDDQLTKSASCFH--  169 (368)
T ss_dssp             SSEEEEEEEECTTTCCEEEEEEETTSCSCCBSCCTTSEEECTTSSCEEEEECSSSCEEEEEETTTEEEEEEECSSCCC--
T ss_pred             cccCCeEEEEECCCCcEeeeecCCccceecccCCccceEECCCCCEEEEEeCCCCeEEEEECCCCcEeEEeeccCcce--
Confidence              477899999999988877653321       223688999999998877778999999999988887775543211  


Q ss_pred             CCccCCCCcceEEEEECCCCCEEEEecCCCcEEEEEcccceeee------eecCCccceEEEEEcCCCCcEEEEEeCCCe
Q 021247          151 PTDKSSSKKFVLSVAWSPDGRRIACGSMDGTISVFDVTRAKFLH------HLEGHFMPVRSLVYSPVDPRVLFSASDDTH  224 (315)
Q Consensus       151 ~~~~~~~~~~i~~~~~~~~~~~l~~~s~dg~i~i~d~~~~~~~~------~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~  224 (315)
                                +    +......+++.+.||.+.++++.......      ....+...+....+.+ ++..+.+.  .+.
T Consensus       170 ----------~----~~~~~~~~v~~~~Dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~--~~~  232 (368)
T d1mdah_         170 ----------I----HPGAAATHYLGSCPASLAASDLAAAPAAAGIVGAQCTGAQNCSSQAAQANY-PGMLVWAV--ASS  232 (368)
T ss_dssp             ----------C----EEEETTEEECCCCTTSCEEEECCSSCCCCEECCCCSCTTSCBCSCCEEETT-TTEEEECB--SSC
T ss_pred             ----------E----ccCCCceEEEEcCCCCEEEEEecCCceeeeeeecccccccccceeeccccc-CcEEEEec--CCC
Confidence                      0    01123455566677777777764332211      1122333334455555 34444333  344


Q ss_pred             EEEEeCCCCeeEEE--eecc----------cccEEEEEEcCCCCeEEEEeCC---------CcEEEEecCccceehcccc
Q 021247          225 VHMYDAEGKSLVTA--MSGH----------ASWVLSVDASPDGAAITTGSSD---------RTVKLWDLNMRAAMQSMTN  283 (315)
Q Consensus       225 i~~wd~~~~~~~~~--~~~~----------~~~i~~~~~~~~~~~l~s~~~d---------~~i~iwd~~~~~~~~~~~~  283 (315)
                      +++++.........  ...+          ......++++|++..++....+         ..|.+||..+++.+.++..
T Consensus       233 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~~~~~~~v~~~~~~~~~~~~~~~v~v~D~~t~~~~~~~~~  312 (368)
T d1mdah_         233 ILQGDIPAAGATMKAAIDGNESGRKADNFRSAGFQMVAKLKNTDGIMILTVEHSRSCLAAAENTSSVTASVGQTSGPISN  312 (368)
T ss_dssp             CEEEECCSSCCEEECCCCSSCTHHHHTTEEECSSSCEEEETTTTEEEEEEEECSSCTTSCEEEEEEEESSSCCEEECCEE
T ss_pred             EEEEeecCCceEEEeecccccceeeeeeecCCCceeEEEcCCCCEEEEEecCCCceeecCCceEEEEECCCCcEeEEecC
Confidence            55555544332211  1110          1112346788888766554322         3589999999988887754


Q ss_pred             cccceEEEEEeeCCCE--EEEEeCCCcEEEeec
Q 021247          284 HTDQVWGVSFRPLGGR--VVSVSDDKSISLYEY  314 (315)
Q Consensus       284 ~~~~v~~~~~s~~~~~--l~s~~~d~~i~i~~~  314 (315)
                       ...+.+++|+|||+.  +++...|++|++||.
T Consensus       313 -~~~~~~~a~spDG~~~ly~s~~~~~~v~v~D~  344 (368)
T d1mdah_         313 -GHDSDAIIAAQDGASDNYANSAGTEVLDIYDA  344 (368)
T ss_dssp             -EEEECEEEECCSSSCEEEEEETTTTEEEEEES
T ss_pred             -CCceeEEEECCCCCEEEEEEeCCCCeEEEEEC
Confidence             457889999999973  467778999999995

>d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Pseudomonas nautica [TaxId: 2743]

Probab=99.72  E-value=1.8e-16  Score=132.91  Aligned_cols=261  Identities=13%  Similarity=0.041  Sum_probs=173.5

Q ss_pred             EEEEeeCCCcEEEEcCCCCcceeecc------------------------------ccccceEEEEeCCCCCEEE-EeeC
Q 021247           32 LLLTGSLDETVKLWRPDDMQLERTNT------------------------------GHCLGVVSVAAHPSGIIAA-SASL   80 (315)
Q Consensus        32 ~l~sgs~d~~v~~w~~~~~~~~~~~~------------------------------~h~~~v~~~~~~~~g~~l~-s~~~   80 (315)
                      .++||+.+|.|.+|+...++..+.++                              .|........++|||+++. +...
T Consensus        13 ~f~Sgg~sG~V~V~dlpS~r~l~~IpVfspd~~~g~g~~~es~~vl~~~~~~~~gd~hhP~~s~t~gtpDGr~lfV~d~~   92 (441)
T d1qnia2          13 GFWSGGHQGEVRVLGVPSMRELMRIPVFNVDSATGWGITNESKEILGGDQQYLNGDCHHPHISMTDGRYDGKYLFINDKA   92 (441)
T ss_dssp             EEEECBTTCCEEEEEETTTEEEEEECSSSBCTTTCTTTSHHHHHHHCSSSCCSCCCBCCCEEEEETTEEEEEEEEEEETT
T ss_pred             EEEeCCCCCcEEEEeCCCCcEEEEEEeEcCCCCEEEEECCccceEEecccccccCcccCCCcceecccCCCCEEEEEcCC
Confidence            57889999999999987766554431                              1333345555678998775 5567


Q ss_pred             CCeEEEEECCCCceeEEeeC-CcccEEEEEECCCCCeEEEEecCCCeE------------------EEEecCCcceeeee
Q 021247           81 DSFVRVFDVDTNASIATLEA-SPSEVWQMQFDPKGTTLAVAGGGSASV------------------KLWDTATWNLIATL  141 (315)
Q Consensus        81 d~~i~~w~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~~~~~d~~i------------------~~~d~~~~~~~~~~  141 (315)
                      +..|.++|+.+.++...+.. .......++|+|+++..++.+.....+                  ..+|..+.+....+
T Consensus        93 ~~rVavIDl~t~k~~~ii~iP~g~gphgi~~spdg~t~YV~~~~~~~v~~~~dg~~~~~~~~~~~~~~iD~~t~~v~~qI  172 (441)
T d1qnia2          93 NTRVARIRLDIMKTDKITHIPNVQAIHGLRLQKVPKTNYVFCNAEFVIPQPNDGTDFSLDNSYTMFTAIDAETMDVAWQV  172 (441)
T ss_dssp             TTEEEEEETTTTEEEEEEECTTCCCEEEEEECCSSBCCEEEEEECSCEESSCSSSCCCGGGEEEEEEEEETTTCSEEEEE
T ss_pred             CCEEEEEECCCCcEeeEEecCCCCCccceEEeccCCEEEEEeccCCcccccCcccccccccccceEEeecCccceeeEEE
Confidence            88999999999988776653 345688999999988655544333333                  44677766666555


Q ss_pred             cCCCCCCCCCCccCCCCcceEEEEECCCCCEEEEecCC-----------------------------------------C
Q 021247          142 SIPRPEGLKPTDKSSSKKFVLSVAWSPDGRRIACGSMD-----------------------------------------G  180 (315)
Q Consensus       142 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~s~d-----------------------------------------g  180 (315)
                      ..+..              ...+.++|+|+++++.+.+                                         +
T Consensus       173 ~v~~~--------------p~~v~~spdGk~a~vt~~nse~~~~id~~t~~~~d~i~v~n~p~~~~~~~dGk~~~v~~~~  238 (441)
T d1qnia2         173 IVDGN--------------LDNTDADYTGKYATSTCYNSERAVDLAGTMRNDRDWVVVFNVERIAAAVKAGNFKTIGDSK  238 (441)
T ss_dssp             EESSC--------------CCCEEECSSSSEEEEEESCTTCCSSHHHHTCSSBCEEEEEEHHHHHHHHHTTCCBCCTTCC
T ss_pred             ecCCC--------------ccceEECCCCCEEEEEecCCCceEEEeccCcceEEEEEeCCccceEEEecCCCEEEeCCCC
Confidence            43221              3467888888877665433                                         2


Q ss_pred             cEEEEEcccceeeeeecCCccceEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCe-----------eEEEeecccccEEEE
Q 021247          181 TISVFDVTRAKFLHHLEGHFMPVRSLVYSPVDPRVLFSASDDTHVHMYDAEGKS-----------LVTAMSGHASWVLSV  249 (315)
Q Consensus       181 ~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~-----------~~~~~~~~~~~i~~~  249 (315)
                      .+.+++......+..+..... ...+.++|++..+++++..++++.+||.+...           .+..-....-.....
T Consensus       239 v~vvd~~~~~~v~~~IPvgks-PhGv~vSPDGkyl~~~~~~~~tvsv~d~~k~~~~~~~~~~~~~~~~~~~~~glgplh~  317 (441)
T d1qnia2         239 VPVVDGRGESEFTRYIPVPKN-PHGLNTSPDGKYFIANGKLSPTVSVIAIDKLDDLFEDKIELRDTIVAEPELGLGPLHT  317 (441)
T ss_dssp             CCEEECSSSCSSEEEECCBSS-CCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHTTTSSCGGGGEEECCBCCSCEEEE
T ss_pred             cEEEEcccCCceEEEEeCCCC-ccCceECCCCCEEEEeCCcCCcEEEEEeehhhhHhhccCCcceEEEeecccccCcccc
Confidence            333444333344444544443 46789999666566778889999999975311           111111112234567


Q ss_pred             EEcCCCCeEEEEeCCCcEEEEecCcc----------cee-----hcccccccceEEEEEeeCCCEEEEE---eCCC
Q 021247          250 DASPDGAAITTGSSDRTVKLWDLNMR----------AAM-----QSMTNHTDQVWGVSFRPLGGRVVSV---SDDK  307 (315)
Q Consensus       250 ~~~~~~~~l~s~~~d~~i~iwd~~~~----------~~~-----~~~~~~~~~v~~~~~s~~~~~l~s~---~~d~  307 (315)
                      +|+++|....+...|..|..|++...          ..+     +...+|...+.+.+++|||++|+++   +-|+
T Consensus       318 ~fd~~g~~yts~~~ds~v~kw~~~~~~~~~~~~~~~~v~~~~~v~y~~GH~~~~~~~t~~pdGk~l~s~~k~s~dr  393 (441)
T d1qnia2         318 TFDGRGNAYTTLFIDSQVCKWNIADAIKHYNGDRVNYIRQKLDVQYQPGHNHASLTESRDADGKWLVVLSKFSKDR  393 (441)
T ss_dssp             EECSSSEEEEEETTTTEEEEEEHHHHHHHHTTCCCCCEEEEEECSSCEEEEEETTTTSTTCCCCEEEEEESCCGGG
T ss_pred             eecCCceEEEcccccceEEEeccchhhhhhccCCCceeEeccccccCCCCCccccccccCCCCcEEEecCcccccc
Confidence            89999998899999999999997421          111     2225787778888999999999999   5554

>d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.63  E-value=2.6e-14  Score=119.10  Aligned_cols=257  Identities=11%  Similarity=-0.016  Sum_probs=160.9

Q ss_pred             EEEEEeecCCCCCcEEEEe----------eCCCcEEEEcCCCCcceeecccccc-------ceEEEEeCCCCCEEEEee-
Q 021247           18 WAVTWVPATETRPALLLTG----------SLDETVKLWRPDDMQLERTNTGHCL-------GVVSVAAHPSGIIAASAS-   79 (315)
Q Consensus        18 ~~v~~~~~~~~~~~~l~sg----------s~d~~v~~w~~~~~~~~~~~~~h~~-------~v~~~~~~~~g~~l~s~~-   79 (315)
                      ..++|+|++..    |+..          +.|+.|++||..+.+....+..+..       ....+.|+|||++++.+. 
T Consensus        68 ~~~a~spDg~~----i~~~~~~~~~~~~g~~d~~v~v~D~~t~~~~~~i~~p~~~~~~~g~~p~~~a~SpDGk~l~va~~  143 (368)
T d1mdah_          68 SLAVAGHSGSD----FALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDAPRFSVGPRVHIIGNCASSACLLFFLF  143 (368)
T ss_dssp             CEEEECTTSSC----EEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEETTSCSCCBSCCTTSEEECTTSSCEEEEEC
T ss_pred             CcceECCCCCE----EEEEcccCccccccccCCeEEEEECCCCcEeeeecCCccceecccCCccceEECCCCCEEEEEeC
Confidence            35889998763    4443          4578899999998887665543221       234688999999887665 


Q ss_pred             CCCeEEEEECCCCceeEEeeCCcccEEEEEECCCCCeEEEEecCCCeEEEEecCCcceeeeecCCCCCCCCCCccCCCCc
Q 021247           80 LDSFVRVFDVDTNASIATLEASPSEVWQMQFDPKGTTLAVAGGGSASVKLWDTATWNLIATLSIPRPEGLKPTDKSSSKK  159 (315)
Q Consensus        80 ~d~~i~~w~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~  159 (315)
                      .++.+.+||+.+++....+..+....    +.|.++..++..+.|+.+.++++..............       ...+..
T Consensus       144 ~~~~v~~~d~~~~~~~~~~~~~~~~~----~~~~~~~~~v~~~~Dg~~~~~~~~~~~~~~~~~~~~~-------~~~~~~  212 (368)
T d1mdah_         144 GSSAAAGLSVPGASDDQLTKSASCFH----IHPGAAATHYLGSCPASLAASDLAAAPAAAGIVGAQC-------TGAQNC  212 (368)
T ss_dssp             SSSCEEEEEETTTEEEEEEECSSCCC----CEEEETTEEECCCCTTSCEEEECCSSCCCCEECCCCS-------CTTSCB
T ss_pred             CCCeEEEEECCCCcEeEEeeccCcce----EccCCCceEEEEcCCCCEEEEEecCCceeeeeeeccc-------cccccc
Confidence            57999999999998887776544332    1223334456667788888888765433222211110       011122


Q ss_pred             ceEEEEECCCCCEEEEecCCCcEEEEEcccceeee--eecCCc----------cceEEEEEcCCCCcEEEEEeCC-----
Q 021247          160 FVLSVAWSPDGRRIACGSMDGTISVFDVTRAKFLH--HLEGHF----------MPVRSLVYSPVDPRVLFSASDD-----  222 (315)
Q Consensus       160 ~i~~~~~~~~~~~l~~~s~dg~i~i~d~~~~~~~~--~~~~~~----------~~v~~~~~~~~~~~~l~s~~~d-----  222 (315)
                      .+....+.+++..+...  .+.++++++..+....  ....+.          .....++++|....+++....+     
T Consensus       213 ~~~~~~~~~~g~~~~~~--~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~~~~~~~v~~~~~~~~~~  290 (368)
T d1mdah_         213 SSQAAQANYPGMLVWAV--ASSILQGDIPAAGATMKAAIDGNESGRKADNFRSAGFQMVAKLKNTDGIMILTVEHSRSCL  290 (368)
T ss_dssp             CSCCEEETTTTEEEECB--SSCCEEEECCSSCCEEECCCCSSCTHHHHTTEEECSSSCEEEETTTTEEEEEEEECSSCTT
T ss_pred             ceeecccccCcEEEEec--CCCEEEEeecCCceEEEeecccccceeeeeeecCCCceeEEEcCCCCEEEEEecCCCceee
Confidence            23456677777665544  3556666665443321  111110          1123467777555555443322     


Q ss_pred             ---CeEEEEeCCCCeeEEEeecccccEEEEEEcCCCC--eEEEEeCCCcEEEEecCccceehcccccccceEEEEE
Q 021247          223 ---THVHMYDAEGKSLVTAMSGHASWVLSVDASPDGA--AITTGSSDRTVKLWDLNMRAAMQSMTNHTDQVWGVSF  293 (315)
Q Consensus       223 ---~~i~~wd~~~~~~~~~~~~~~~~i~~~~~~~~~~--~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~  293 (315)
                         ..|.+||.++++.+..+.. ...+.+++|+|||+  +++++..|+.|++||..+++.+.++.... ...+|++
T Consensus       291 ~~~~~v~v~D~~t~~~~~~~~~-~~~~~~~a~spDG~~~ly~s~~~~~~v~v~D~~tgk~~~~i~~g~-~P~~l~~  364 (368)
T d1mdah_         291 AAAENTSSVTASVGQTSGPISN-GHDSDAIIAAQDGASDNYANSAGTEVLDIYDAASDQDQSSVELDK-GPESLSV  364 (368)
T ss_dssp             SCEEEEEEEESSSCCEEECCEE-EEEECEEEECCSSSCEEEEEETTTTEEEEEESSSCEEEEECCCCS-CCCEEEC
T ss_pred             cCCceEEEEECCCCcEeEEecC-CCceeEEEECCCCCEEEEEEeCCCCeEEEEECCCCCEEEEEECCC-CCCEEEE
Confidence               3589999999888776653 35688899999987  35677889999999999999888876433 2344444

>d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl peptidase IV/CD26, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=99.58  E-value=1.1e-13  Score=119.12  Aligned_cols=294  Identities=12%  Similarity=0.087  Sum_probs=163.6

Q ss_pred             hhccccceEEEEEeecCCCCCcEEEEee---------CCCcEEEEcCCCCcceeeccccccceEEEEeCCCCCEEEEeeC
Q 021247           10 ENAHEESVWAVTWVPATETRPALLLTGS---------LDETVKLWRPDDMQLERTNTGHCLGVVSVAAHPSGIIAASASL   80 (315)
Q Consensus        10 ~~~h~~~v~~v~~~~~~~~~~~~l~sgs---------~d~~v~~w~~~~~~~~~~~~~h~~~v~~~~~~~~g~~l~s~~~   80 (315)
                      +..|...|.+++|+|+++    .|+.++         .++.+.+||..+.+. ..+..|...+....|+|+|+.++.. .
T Consensus        57 ~~~~~~~i~~~~~SpDg~----~i~~~~~~~~~~r~s~~~~~~l~d~~~~~~-~~l~~~~~~~~~~~~SPDG~~ia~~-~  130 (470)
T d2bgra1          57 FDEFGHSINDYSISPDGQ----FILLEYNYVKQWRHSYTASYDIYDLNKRQL-ITEERIPNNTQWVTWSPVGHKLAYV-W  130 (470)
T ss_dssp             TTTSSSCCCEEEECTTSS----EEEEEEEEEECSSSCEEEEEEEEETTTTEE-CCSSCCCTTEEEEEECSSTTCEEEE-E
T ss_pred             hhhccCccceeEECCCCC----EEEEEECCcceeeeccCceEEEEECCCCcc-cccccCCccccccccccCcceeeEe-e
Confidence            356778899999999886    466653         357789999988764 4566788889999999999999986 4


Q ss_pred             CCeEEEEECCCCceeEEeeCCc------------------ccEEEEEECCCCCeEEEEecCCCeEEEEecCC-------c
Q 021247           81 DSFVRVFDVDTNASIATLEASP------------------SEVWQMQFDPKGTTLAVAGGGSASVKLWDTAT-------W  135 (315)
Q Consensus        81 d~~i~~w~~~~~~~~~~~~~~~------------------~~v~~~~~~~~~~~~~~~~~~d~~i~~~d~~~-------~  135 (315)
                      ++.+++|+..++...+......                  .....+.|+|+|+.+++...++..+..|.+..       .
T Consensus       131 ~~~l~~~~~~~g~~~~~t~~~~~~~~~~g~~d~~~~~~~~~~~~~~~wSPDGk~ia~~~~d~~~v~~~~~~~~~~~~~~~  210 (470)
T d2bgra1         131 NNDIYVKIEPNLPSYRITWTGKEDIIYNGITDWVYEEEVFSAYSALWWSPNGTFLAYAQFNDTEVPLIEYSFYSDESLQY  210 (470)
T ss_dssp             TTEEEEESSTTSCCEECCSCCBTTTEEESBCCHHHHHHTSSSSBCEEECTTSSEEEEEEEECTTCCEEEEEECCSTTCSS
T ss_pred             cccceEEECCCCceeeeeeccCCCcccccccceeeeeeecCCccccEECCCCCccceeEecCCcCceEEEEeeccCCCCC
Confidence            7789999999887654332111                  12345679999998877655444454443311       0


Q ss_pred             ceeeeecCCCCCCC-----------------CCC---------ccCCCCcceEEEEECCCCCEEEEec---CC-CcEEEE
Q 021247          136 NLIATLSIPRPEGL-----------------KPT---------DKSSSKKFVLSVAWSPDGRRIACGS---MD-GTISVF  185 (315)
Q Consensus       136 ~~~~~~~~~~~~~~-----------------~~~---------~~~~~~~~i~~~~~~~~~~~l~~~s---~d-g~i~i~  185 (315)
                      ........+.....                 ...         ........+..+.|.+++..++...   .+ ..+.++
T Consensus       211 ~~~~~~~~~~~g~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~r~~~~~~~~~~  290 (470)
T d2bgra1         211 PKTVRVPYPKAGAVNPTVKFFVVNTDSLSSVTNATSIQITAPASMLIGDHYLCDVTWATQERISLQWLRRIQNYSVMDIC  290 (470)
T ss_dssp             CEEEEEECCBTTSCCCEEEEEEEEGGGCCSSSCCCEEEECCCHHHHTSCEEEEEEEEEETTEEEEEEEESSTTEEEEEEE
T ss_pred             CeeeeeccccccccCCcceEEEEECCCcceeeeccccccCCccccCCCCceEEEEEEcCCCceeEEEeeccCCceEEEEE
Confidence            00111111100000                 000         0011223466788988887655432   22 123444


Q ss_pred             --Ecccceeeeeec-------------CCccceEEEEEcCCCCc-EEEEEeCCCeE--EEEeCCCCeeEEEeecccccEE
Q 021247          186 --DVTRAKFLHHLE-------------GHFMPVRSLVYSPVDPR-VLFSASDDTHV--HMYDAEGKSLVTAMSGHASWVL  247 (315)
Q Consensus       186 --d~~~~~~~~~~~-------------~~~~~v~~~~~~~~~~~-~l~s~~~d~~i--~~wd~~~~~~~~~~~~~~~~i~  247 (315)
                        |..++.......             .+...  ...+.+.+.. +++.+..|+..  ++|+..++... .+..+...+.
T Consensus       291 ~~d~~tg~~~~~~~~~~~~~~~~~~i~~~~~~--~~~~~~~~~~~~~~~s~~dg~~~ly~~~~~g~~~~-~lt~g~~~v~  367 (470)
T d2bgra1         291 DYDESSGRWNCLVARQHIEMSTTGWVGRFRPS--EPHFTLDGNSFYKIISNEEGYRHICYFQIDKKDCT-FITKGTWEVI  367 (470)
T ss_dssp             EEETTTTEEEECGGGCEEEECSSSCSSSSSCC--CCEECTTSSEEEEEEECTTSCEEEEEEETTCSCCE-ESCCSSSCEE
T ss_pred             EecCCCCcEEEEEEEeeeeeeccceeecccCC--CceeeecCCCcEEEEeccCcCceeEEEeccCCcee-eeccCCeeEE
Confidence              444554332211             11111  2234443333 45566667654  55566555443 3444445566


Q ss_pred             EEEEcCCCC-eEEEEeCCCc----EEEE--ecCccce---e-hcccccccceEEEEEeeCCCEEE---EEeCCCcEEEee
Q 021247          248 SVDASPDGA-AITTGSSDRT----VKLW--DLNMRAA---M-QSMTNHTDQVWGVSFRPLGGRVV---SVSDDKSISLYE  313 (315)
Q Consensus       248 ~~~~~~~~~-~l~s~~~d~~----i~iw--d~~~~~~---~-~~~~~~~~~v~~~~~s~~~~~l~---s~~~d~~i~i~~  313 (315)
                      .+ ++++++ +.+++..++.    -.||  ++..+..   + .++..|...+.+++|||||++++   ++...-.++||+
T Consensus       368 ~~-~~~d~~~iyf~a~~~~~~p~~~~ly~v~~~g~~~~~~lt~~~~~~~~~~~s~~fSpdgky~~~~~s~~~~P~~~l~~  446 (470)
T d2bgra1         368 GI-EALTSDYLYYISNEYKGMPGGRNLYKIQLSDYTKVTCLSCELNPERCQYYSVSFSKEAKYYQLRCSGPGLPLYTLHS  446 (470)
T ss_dssp             EE-EEECSSEEEEEESCGGGCTTCBEEEEEETTCTTCEEESSTTTSTTTBCBEEEEECTTSSEEEEEECSBSSCEEEEEE
T ss_pred             EE-EEECCCEEEEEEecCCCCcceEEEEEEECCCCCceeEecccccCCCCCEEEEEECCCCCEEEEEecCCCCCeEEEEE
Confidence            65 333333 3345543322    1344  3333222   2 23456778899999999999976   233333455554

>d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Pseudomonas nautica [TaxId: 2743]

Probab=99.55  E-value=1.3e-12  Score=109.33  Aligned_cols=226  Identities=10%  Similarity=0.051  Sum_probs=151.1

Q ss_pred             EEEEeeCCCeEEEEECCCCceeEEeeC------------------------------CcccEEEEEECCCCCeEEEEecC
Q 021247           74 IAASASLDSFVRVFDVDTNASIATLEA------------------------------SPSEVWQMQFDPKGTTLAVAGGG  123 (315)
Q Consensus        74 ~l~s~~~d~~i~~w~~~~~~~~~~~~~------------------------------~~~~v~~~~~~~~~~~~~~~~~~  123 (315)
                      .++|++.+|.|++|++.+.+.+.++..                              |..........|+|+++++....
T Consensus        13 ~f~Sgg~sG~V~V~dlpS~r~l~~IpVfspd~~~g~g~~~es~~vl~~~~~~~~gd~hhP~~s~t~gtpDGr~lfV~d~~   92 (441)
T d1qnia2          13 GFWSGGHQGEVRVLGVPSMRELMRIPVFNVDSATGWGITNESKEILGGDQQYLNGDCHHPHISMTDGRYDGKYLFINDKA   92 (441)
T ss_dssp             EEEECBTTCCEEEEEETTTEEEEEECSSSBCTTTCTTTSHHHHHHHCSSSCCSCCCBCCCEEEEETTEEEEEEEEEEETT
T ss_pred             EEEeCCCCCcEEEEeCCCCcEEEEEEeEcCCCCEEEEECCccceEEecccccccCcccCCCcceecccCCCCEEEEEcCC
Confidence            367888999999999998887776532                              11224444557889999888888


Q ss_pred             CCeEEEEecCCcceeeeecCCCCCCCCCCccCCCCcceEEEEECCCCC--EEEEecCCC-----------------cEEE
Q 021247          124 SASVKLWDTATWNLIATLSIPRPEGLKPTDKSSSKKFVLSVAWSPDGR--RIACGSMDG-----------------TISV  184 (315)
Q Consensus       124 d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~--~l~~~s~dg-----------------~i~i  184 (315)
                      +.+|.++|+++++....+.++...            .+..++|+|+++  ++++.+.+.                 .+..
T Consensus        93 ~~rVavIDl~t~k~~~ii~iP~g~------------gphgi~~spdg~t~YV~~~~~~~v~~~~dg~~~~~~~~~~~~~~  160 (441)
T d1qnia2          93 NTRVARIRLDIMKTDKITHIPNVQ------------AIHGLRLQKVPKTNYVFCNAEFVIPQPNDGTDFSLDNSYTMFTA  160 (441)
T ss_dssp             TTEEEEEETTTTEEEEEEECTTCC------------CEEEEEECCSSBCCEEEEEECSCEESSCSSSCCCGGGEEEEEEE
T ss_pred             CCEEEEEECCCCcEeeEEecCCCC------------CccceEEeccCCEEEEEeccCCcccccCcccccccccccceEEe
Confidence            999999999999888777654322            267899999998  444444332                 2345


Q ss_pred             EEcccceeeeeecCCccceEEEEEcCCCCcEEEEEeCC-----------------------------------------C
Q 021247          185 FDVTRAKFLHHLEGHFMPVRSLVYSPVDPRVLFSASDD-----------------------------------------T  223 (315)
Q Consensus       185 ~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d-----------------------------------------~  223 (315)
                      +|..+.+....+.... ....+.|+|++ +++++.+.+                                         +
T Consensus       161 iD~~t~~v~~qI~v~~-~p~~v~~spdG-k~a~vt~~nse~~~~id~~t~~~~d~i~v~n~p~~~~~~~dGk~~~v~~~~  238 (441)
T d1qnia2         161 IDAETMDVAWQVIVDG-NLDNTDADYTG-KYATSTCYNSERAVDLAGTMRNDRDWVVVFNVERIAAAVKAGNFKTIGDSK  238 (441)
T ss_dssp             EETTTCSEEEEEEESS-CCCCEEECSSS-SEEEEEESCTTCCSSHHHHTCSSBCEEEEEEHHHHHHHHHTTCCBCCTTCC
T ss_pred             ecCccceeeEEEecCC-CccceEECCCC-CEEEEEecCCCceEEEeccCcceEEEEEeCCccceEEEecCCCEEEeCCCC
Confidence            7777766655544332 35678899854 454444322                                         2


Q ss_pred             eEEEEeCCCCeeEEEeecccccEEEEEEcCCCCeE-EEEeCCCcEEEEecCcccee--------hcccccc---cceEEE
Q 021247          224 HVHMYDAEGKSLVTAMSGHASWVLSVDASPDGAAI-TTGSSDRTVKLWDLNMRAAM--------QSMTNHT---DQVWGV  291 (315)
Q Consensus       224 ~i~~wd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l-~s~~~d~~i~iwd~~~~~~~--------~~~~~~~---~~v~~~  291 (315)
                      .+.+++......+..+.... ....+.++|+|+++ +++..+++|.+||+.+...+        ..+.++.   -.....
T Consensus       239 v~vvd~~~~~~v~~~IPvgk-sPhGv~vSPDGkyl~~~~~~~~tvsv~d~~k~~~~~~~~~~~~~~~~~~~~~glgplh~  317 (441)
T d1qnia2         239 VPVVDGRGESEFTRYIPVPK-NPHGLNTSPDGKYFIANGKLSPTVSVIAIDKLDDLFEDKIELRDTIVAEPELGLGPLHT  317 (441)
T ss_dssp             CCEEECSSSCSSEEEECCBS-SCCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHTTTSSCGGGGEEECCBCCSCEEEE
T ss_pred             cEEEEcccCCceEEEEeCCC-CccCceECCCCCEEEEeCCcCCcEEEEEeehhhhHhhccCCcceEEEeecccccCcccc
Confidence            33344344444455544332 35678999999976 66788999999998753211        1111111   123457


Q ss_pred             EEeeCCCEEEEEeCCCcEEEeec
Q 021247          292 SFRPLGGRVVSVSDDKSISLYEY  314 (315)
Q Consensus       292 ~~s~~~~~l~s~~~d~~i~i~~~  314 (315)
                      +|.++|....+...|..|..|++
T Consensus       318 ~fd~~g~~yts~~~ds~v~kw~~  340 (441)
T d1qnia2         318 TFDGRGNAYTTLFIDSQVCKWNI  340 (441)
T ss_dssp             EECSSSEEEEEETTTTEEEEEEH
T ss_pred             eecCCceEEEcccccceEEEecc
Confidence            89999988899999999999986

>d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Serine/threonine-protein kinase PknD
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.52  E-value=1.3e-11  Score=97.32  Aligned_cols=239  Identities=10%  Similarity=0.024  Sum_probs=155.1

Q ss_pred             cccceEEEEeCCCCCEEEEe-eCCCeEEEEECCCCceeEEeeCCcccEEEEEECCCCCeEEEEecCCCeEEEEecCCcce
Q 021247           59 HCLGVVSVAAHPSGIIAASA-SLDSFVRVFDVDTNASIATLEASPSEVWQMQFDPKGTTLAVAGGGSASVKLWDTATWNL  137 (315)
Q Consensus        59 h~~~v~~~~~~~~g~~l~s~-~~d~~i~~w~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~~d~~~~~~  137 (315)
                      +......++++++|.+.++. +..+.+..++...................++++++++ ++++....+.+++++......
T Consensus        12 ~~~~P~~vavd~dG~i~v~~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~gvav~~~g~-i~v~d~~~~~i~~~~~~~~~~   90 (260)
T d1rwia_          12 FRLSPSGVAVDSAGNVYVTSEGMYGRVVKLATGSTGTTVLPFNGLYQPQGLAVDGAGT-VYVTDFNNRVVTLAAGSNNQT   90 (260)
T ss_dssp             SCCCEEEEEECTTCCEEEEECSSSCEEEEEC----CEEECCCCSCCSCCCEEECTTCC-EEEEETTTEEEEECTTCSCCE
T ss_pred             CcCCCCEEEEcCCCCEEEEEcCCCCEEEEEcCCCceEEEeccCCccCceEEEEcCCCC-EEEeeeeeceeeeeeecccee
Confidence            33567899999999976654 5557777766654433322222223456788999877 556666666676665443322


Q ss_pred             eeeecCCCCCCCCCCccCCCCcceEEEEECCCCCEEEEecCCCcEEEEEcccceeeeeecCCccceEEEEEcCCCCcEEE
Q 021247          138 IATLSIPRPEGLKPTDKSSSKKFVLSVAWSPDGRRIACGSMDGTISVFDVTRAKFLHHLEGHFMPVRSLVYSPVDPRVLF  217 (315)
Q Consensus       138 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~s~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~  217 (315)
                      +...              ........+++.++++++++-..+..+..++...................+++.| ++++++
T Consensus        91 ~~~~--------------~~~~~p~~iavd~~g~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~~i~~~~-~g~~~v  155 (260)
T d1rwia_          91 VLPF--------------DGLNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQTVLPFTGLNDPDGVAVDN-SGNVYV  155 (260)
T ss_dssp             ECCC--------------CSCCSEEEEEECTTCCEEEEEGGGTEEEEECTTCSSCEECCCCSCCSCCEEEECT-TCCEEE
T ss_pred             eeee--------------eeeeecccccccccceeEeeccccccccccccccceeeeeeecccCCcceeeecC-CCCEee
Confidence            2111              1112367899999999888777777788887654332222222233457888888 567888


Q ss_pred             EEeCCCeEEEEeCCCCeeEEEeecccccEEEEEEcCCCCeEEEEeCCCcEEEEecCccceehcccccccceEEEEEeeCC
Q 021247          218 SASDDTHVHMYDAEGKSLVTAMSGHASWVLSVDASPDGAAITTGSSDRTVKLWDLNMRAAMQSMTNHTDQVWGVSFRPLG  297 (315)
Q Consensus       218 s~~~d~~i~~wd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~  297 (315)
                      +...++.|..+|.++................++++++|.++++...++.|..++.............-....+++++++|
T Consensus       156 ~~~~~~~i~~~d~~~~~~~~~~~~~~~~p~gi~~d~~g~l~vsd~~~~~i~~~~~~~~~~~~~~~~~~~~P~~i~~d~~g  235 (260)
T d1rwia_         156 TDTDNNRVVKLEAESNNQVVLPFTDITAPWGIAVDEAGTVYVTEHNTNQVVKLLAGSTTSTVLPFTGLNTPLAVAVDSDR  235 (260)
T ss_dssp             EEGGGTEEEEECTTTCCEEECCCSSCCSEEEEEECTTCCEEEEETTTTEEEEECTTCSCCEECCCCSCCCEEEEEECTTC
T ss_pred             eccccccccccccccceeeeeeccccCCCccceeeeeeeeeeeecCCCEEEEEeCCCCeEEEEccCCCCCeEEEEEeCCC
Confidence            88888999999988665444333455667899999999988888888888888765432221111223467899999999


Q ss_pred             CEEEEEeCCCcEEEee
Q 021247          298 GRVVSVSDDKSISLYE  313 (315)
Q Consensus       298 ~~l~s~~~d~~i~i~~  313 (315)
                      ..+++-..+++|+.++
T Consensus       236 ~l~vad~~~~rI~~i~  251 (260)
T d1rwia_         236 TVYVADRGNDRVVKLT  251 (260)
T ss_dssp             CEEEEEGGGTEEEEEC
T ss_pred             CEEEEECCCCEEEEEe
Confidence            8878777778887654

>d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl peptidase IV/CD26, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=99.46  E-value=7.5e-12  Score=107.42  Aligned_cols=155  Identities=12%  Similarity=0.175  Sum_probs=107.6

Q ss_pred             ceEEEEEeecCCCCCcEEEEeeCCCcEEEEcCCCCcceeec-----cccccceEEEEeCCCCCEEEEeeC---------C
Q 021247           16 SVWAVTWVPATETRPALLLTGSLDETVKLWRPDDMQLERTN-----TGHCLGVVSVAAHPSGIIAASASL---------D   81 (315)
Q Consensus        16 ~v~~v~~~~~~~~~~~~l~sgs~d~~v~~w~~~~~~~~~~~-----~~h~~~v~~~~~~~~g~~l~s~~~---------d   81 (315)
                      .-..+.|.+.+.    +++  ..|+.+.+||..+++....+     ..|...|.++.|+|||++|+.++.         +
T Consensus        18 ~~~~~~W~~d~~----~~~--~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~i~~~~~SpDg~~i~~~~~~~~~~r~s~~   91 (470)
T d2bgra1          18 KLYSLRWISDHE----YLY--KQENNILVFNAEYGNSSVFLENSTFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYT   91 (470)
T ss_dssp             CCCCCEECSSSE----EEE--ESSSCEEEEETTTCCEEEEECTTTTTTSSSCCCEEEECTTSSEEEEEEEEEECSSSCEE
T ss_pred             cccCCEeCCCCE----EEE--EcCCcEEEEECCCCCEEEEEchhhhhhccCccceeEECCCCCEEEEEECCcceeeeccC
Confidence            345688988664    454  45789999999988765443     445578999999999999987743         5


Q ss_pred             CeEEEEECCCCceeEEeeCCcccEEEEEECCCCCeEEEEecCCCeEEEEecCCcceeeeecCCCCCCCC---CC--ccCC
Q 021247           82 SFVRVFDVDTNASIATLEASPSEVWQMQFDPKGTTLAVAGGGSASVKLWDTATWNLIATLSIPRPEGLK---PT--DKSS  156 (315)
Q Consensus        82 ~~i~~w~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~---~~--~~~~  156 (315)
                      +.+++||+.+++. ..+..++..+..+.|+|+|+.++..  .++.+.+|+..+++..............   +.  ....
T Consensus        92 ~~~~l~d~~~~~~-~~l~~~~~~~~~~~~SPDG~~ia~~--~~~~l~~~~~~~g~~~~~t~~~~~~~~~~g~~d~~~~~~  168 (470)
T d2bgra1          92 ASYDIYDLNKRQL-ITEERIPNNTQWVTWSPVGHKLAYV--WNNDIYVKIEPNLPSYRITWTGKEDIIYNGITDWVYEEE  168 (470)
T ss_dssp             EEEEEEETTTTEE-CCSSCCCTTEEEEEECSSTTCEEEE--ETTEEEEESSTTSCCEECCSCCBTTTEEESBCCHHHHHH
T ss_pred             ceEEEEECCCCcc-cccccCCccccccccccCcceeeEe--ecccceEEECCCCceeeeeeccCCCcccccccceeeeee
Confidence            6789999998764 4567778889999999999988765  4678999999887765443221110000   00  0000


Q ss_pred             CCcceEEEEECCCCCEEEEecCC
Q 021247          157 SKKFVLSVAWSPDGRRIACGSMD  179 (315)
Q Consensus       157 ~~~~i~~~~~~~~~~~l~~~s~d  179 (315)
                      .......+.|+|||++|+....|
T Consensus       169 ~~~~~~~~~wSPDGk~ia~~~~d  191 (470)
T d2bgra1         169 VFSAYSALWWSPNGTFLAYAQFN  191 (470)
T ss_dssp             TSSSSBCEEECTTSSEEEEEEEE
T ss_pred             ecCCccccEECCCCCccceeEec
Confidence            11224568899999999887644

>d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme
family: 3-carboxy-cis,cis-mucoante lactonizing enzyme
domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme
species: Neurospora crassa [TaxId: 5141]

Probab=99.43  E-value=2.2e-11  Score=100.87  Aligned_cols=281  Identities=7%  Similarity=0.008  Sum_probs=157.6

Q ss_pred             EEEeeC--CCcEEEEcC--CCCccee--e-ccccccceEEEEeCCCCCEEEEeeCCCeEEEEECCCCceeEEee--CCcc
Q 021247           33 LLTGSL--DETVKLWRP--DDMQLER--T-NTGHCLGVVSVAAHPSGIIAASASLDSFVRVFDVDTNASIATLE--ASPS  103 (315)
Q Consensus        33 l~sgs~--d~~v~~w~~--~~~~~~~--~-~~~h~~~v~~~~~~~~g~~l~s~~~d~~i~~w~~~~~~~~~~~~--~~~~  103 (315)
                      |+.|+.  .+.|..+.+  ++.++..  . .......+..|.+++++++|.++.. +.+..|.+.....+....  ....
T Consensus         5 l~vGtyt~~~~i~~~~fd~~~~~l~~~~~~~~~~~~~~s~la~s~d~~~ly~~~~-~~~~~~~i~~~~~~~~~~~~~~~~   83 (365)
T d1jofa_           5 LMIGTWTPPGAIFTVQFDDEKLTCKLIKRTEIPQDEPISWMTFDHERKNIYGAAM-KKWSSFAVKSPTEIVHEASHPIGG   83 (365)
T ss_dssp             EEEEESSSSCEEEEEEEETTTTEEEEEEEEECCTTCCCSEEEECTTSSEEEEEEB-TEEEEEEEEETTEEEEEEEEECCS
T ss_pred             EEEEeecCCCCEEEEEEcCCCCeEEEeeeeeccCCCCCCEEEEcCCCCEEEEEeC-CcEEEEEEeCCCCeEEEeeecCCC
Confidence            666654  456766554  4443321  1 1123344567999999999887764 567777776543322221  1112


Q ss_pred             cEEEEEECCCCCeEEEEe--cCCCeEEEEecCCc-ceeeeecCCCCC---CCCCCccCCCCcceEEEEECCCCCEEEEec
Q 021247          104 EVWQMQFDPKGTTLAVAG--GGSASVKLWDTATW-NLIATLSIPRPE---GLKPTDKSSSKKFVLSVAWSPDGRRIACGS  177 (315)
Q Consensus       104 ~v~~~~~~~~~~~~~~~~--~~d~~i~~~d~~~~-~~~~~~~~~~~~---~~~~~~~~~~~~~i~~~~~~~~~~~l~~~s  177 (315)
                      ....+.++|+++.++++.  ...+.+..+.+... .....+.+....   ...+....+....+.++.|+|+|+++++..
T Consensus        84 ~p~~v~~~~~~~~~~v~~a~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~h~h~v~~sPdG~~l~v~d  163 (365)
T d1jofa_          84 HPRANDADTNTRAIFLLAAKQPPYAVYANPFYKFAGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPTETYLYSAD  163 (365)
T ss_dssp             SGGGGCTTSCCEEEEEEECSSTTCCEEEEEESSSCCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECTTSSEEEEEE
T ss_pred             CcEEEEECCCCCEEEEEEecCCCCEEEEeEccCCCCcceeEeeeecceecCcccCcccCCCCcceEEEECCCCCEEEEee
Confidence            234566778877544433  23455655543221 111111111000   000000112233478999999999887664


Q ss_pred             -CCCcEEEEEcccc-ee--eeee--cCCccceEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCeeE--EEee---------
Q 021247          178 -MDGTISVFDVTRA-KF--LHHL--EGHFMPVRSLVYSPVDPRVLFSASDDTHVHMYDAEGKSLV--TAMS---------  240 (315)
Q Consensus       178 -~dg~i~i~d~~~~-~~--~~~~--~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~--~~~~---------  240 (315)
                       ....|.+|+.... ..  ....  .......+.+.|+|++..+.++.-.++.|.+|+.......  ....         
T Consensus       164 ~g~d~v~~~~~~~~g~~~~~~~~~~~~~g~gPr~i~f~pdg~~~yv~~e~~~~V~v~~~~~~~~~~~~~~~~~~~~~~~~  243 (365)
T d1jofa_         164 LTANKLWTHRKLASGEVELVGSVDAPDPGDHPRWVAMHPTGNYLYALMEAGNRICEYVIDPATHMPVYTHHSFPLIPPGI  243 (365)
T ss_dssp             TTTTEEEEEEECTTSCEEEEEEEECSSTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEESSCTTC
T ss_pred             CCCCEEEEEEccCCCceeeccceeecCCCCceEEEEECCCCceEEEeccCCCEEEEEEecCCCceEEEEeeeeccccccc
Confidence             3457888876432 22  1111  1233567899999966656677778899999997654321  1111         


Q ss_pred             --------cccccEEEEEEcCCCCeEEEEeC------CCcEEEEecCcccee------hcccccccceEEEEEee-CCCE
Q 021247          241 --------GHASWVLSVDASPDGAAITTGSS------DRTVKLWDLNMRAAM------QSMTNHTDQVWGVSFRP-LGGR  299 (315)
Q Consensus       241 --------~~~~~i~~~~~~~~~~~l~s~~~------d~~i~iwd~~~~~~~------~~~~~~~~~v~~~~~s~-~~~~  299 (315)
                              .+......+.++|+|++|+++..      ...|..|++.....+      ..........++++++| +|++
T Consensus       244 ~~~~~~~~~~~~~~~~i~~spdG~~lyvsnr~~~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~G~~p~~i~~~p~~G~~  323 (365)
T d1jofa_         244 PDRDPETGKGLYRADVCALTFSGKYMFASSRANKFELQGYIAGFKLRDCGSIEKQLFLSPTPTSGGHSNAVSPCPWSDEW  323 (365)
T ss_dssp             CCBCTTTSSBSEEEEEEEECTTSSEEEEEEEESSTTSCCEEEEEEECTTSCEEEEEEEEECSSCCTTCCCEEECTTCTTE
T ss_pred             cccccccccccCCccceEECCCCCEEEEEcccCCCccceEEEEEEecCCCceeeEeEeeEEEcCCCCccEEEecCCCCCE
Confidence                    12234567899999999877643      223777776542211      11122334567899998 7887


Q ss_pred             EEEE-eCCCcEEEeec
Q 021247          300 VVSV-SDDKSISLYEY  314 (315)
Q Consensus       300 l~s~-~~d~~i~i~~~  314 (315)
                      |+.+ ..+++|.+|++
T Consensus       324 l~va~~~s~~v~v~~~  339 (365)
T d1jofa_         324 MAITDDQEGWLEIYRW  339 (365)
T ss_dssp             EEEECSSSCEEEEEEE
T ss_pred             EEEEeCCCCeEEEEEE
Confidence            7655 56799999975

>d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Brain tumor cg10719-pa
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.40  E-value=3.6e-09  Score=83.91  Aligned_cols=234  Identities=13%  Similarity=0.236  Sum_probs=158.9

Q ss_pred             ceEEEEeCCCCCEEEEeeCCCeEEEEECCCCceeEEeeCC------cccEEEEEECCCCC-eEEEEecCCCeEEEEecCC
Q 021247           62 GVVSVAAHPSGIIAASASLDSFVRVFDVDTNASIATLEAS------PSEVWQMQFDPKGT-TLAVAGGGSASVKLWDTAT  134 (315)
Q Consensus        62 ~v~~~~~~~~g~~l~s~~~d~~i~~w~~~~~~~~~~~~~~------~~~v~~~~~~~~~~-~~~~~~~~d~~i~~~d~~~  134 (315)
                      ....++++++|+++++-...+.|++||.+ +..+..+...      ......+.+.++.. .+++..+.+..|.+++.. 
T Consensus        24 ~P~gvavd~dg~i~VaD~~n~rI~v~d~~-G~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-  101 (279)
T d1q7fa_          24 EPSGVAVNAQNDIIVADTNNHRIQIFDKE-GRFKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSPTHQIQIYNQY-  101 (279)
T ss_dssp             CEEEEEECTTCCEEEEEGGGTEEEEECTT-SCEEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECGGGCEEEEECTT-
T ss_pred             CccEEEEcCCCCEEEEECCCCEEEEEeCC-CCEEEEecccCCCcccccccccccccccccccceeccCCcccccccccc-
Confidence            46789999999999887788899999965 4555444221      11234455554443 343444455677777753 


Q ss_pred             cceeeeecCCCCCCCCCCccCCCCcceEEEEECCCCCEEEEecCCCcEEEEEcccceeeeee--cCCccceEEEEEcCCC
Q 021247          135 WNLIATLSIPRPEGLKPTDKSSSKKFVLSVAWSPDGRRIACGSMDGTISVFDVTRAKFLHHL--EGHFMPVRSLVYSPVD  212 (315)
Q Consensus       135 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~s~dg~i~i~d~~~~~~~~~~--~~~~~~v~~~~~~~~~  212 (315)
                      ++....+...            .......+++.++|+.+++....+.+.+++.. ++.+..+  ..+......+++.+ +
T Consensus       102 g~~~~~~~~~------------~~~~p~~~avd~~G~i~v~~~~~~~~~~~~~~-g~~~~~~g~~~~~~~~~~i~~d~-~  167 (279)
T d1q7fa_         102 GQFVRKFGAT------------ILQHPRGVTVDNKGRIIVVECKVMRVIIFDQN-GNVLHKFGCSKHLEFPNGVVVND-K  167 (279)
T ss_dssp             SCEEEEECTT------------TCSCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEEEECTTTCSSEEEEEECS-S
T ss_pred             ccceeecCCC------------cccccceeccccCCcEEEEeeccceeeEeccC-Cceeecccccccccccceeeecc-c
Confidence            4444443211            11236789999999988888888889998864 4444443  33556677888887 5


Q ss_pred             CcEEEEEeCCCeEEEEeCCCCeeEEEee--cccccEEEEEEcCCCCeEEEEeC-CCcEEEEecCccceehccccc--ccc
Q 021247          213 PRVLFSASDDTHVHMYDAEGKSLVTAMS--GHASWVLSVDASPDGAAITTGSS-DRTVKLWDLNMRAAMQSMTNH--TDQ  287 (315)
Q Consensus       213 ~~~l~s~~~d~~i~~wd~~~~~~~~~~~--~~~~~i~~~~~~~~~~~l~s~~~-d~~i~iwd~~~~~~~~~~~~~--~~~  287 (315)
                      +.++++....+.|++||..+. .+..+.  +.......++++++|+++++-.. ++.|.+|+.+ ++.+.++...  ...
T Consensus       168 g~i~v~d~~~~~V~~~d~~G~-~~~~~g~~g~~~~P~giavD~~G~i~Vad~~~~~~v~~f~~~-G~~~~~~~~~~~~~~  245 (279)
T d1q7fa_         168 QEIFISDNRAHCVKVFNYEGQ-YLRQIGGEGITNYPIGVGINSNGEILIADNHNNFNLTIFTQD-GQLISALESKVKHAQ  245 (279)
T ss_dssp             SEEEEEEGGGTEEEEEETTCC-EEEEESCTTTSCSEEEEEECTTCCEEEEECSSSCEEEEECTT-SCEEEEEEESSCCSC
T ss_pred             eeEEeeeccccceeeeecCCc-eeeeecccccccCCcccccccCCeEEEEECCCCcEEEEECCC-CCEEEEEeCCCCCCC
Confidence            678888888899999998764 344432  34556889999999997777554 4579999854 6665554322  246


Q ss_pred             eEEEEEeeCCCEEEEEeCCCcEEEeec
Q 021247          288 VWGVSFRPLGGRVVSVSDDKSISLYEY  314 (315)
Q Consensus       288 v~~~~~s~~~~~l~s~~~d~~i~i~~~  314 (315)
                      .+.|++.|+|.. +.+..+.+|++|.|
T Consensus       246 p~~vav~~dG~l-~V~~~n~~v~~fr~  271 (279)
T d1q7fa_         246 CFDVALMDDGSV-VLASKDYRLYIYRY  271 (279)
T ss_dssp             EEEEEEETTTEE-EEEETTTEEEEEEC
T ss_pred             EeEEEEeCCCcE-EEEeCCCeEEEEEe
Confidence            789999999865 44567899999986

>d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: All0351-like
domain: Hypothetical protein All0351 homologue
species: Nostoc punctiforme [TaxId: 272131]

Probab=99.36  E-value=1.4e-09  Score=87.43  Aligned_cols=230  Identities=13%  Similarity=0.074  Sum_probs=151.9

Q ss_pred             ceEEEEeCCCCCEEEEeeCCCeEEEEECCCCceeEEeeCCcccEEEEEECCCCCeEEEEecCCCeEEEEecCCcceeeee
Q 021247           62 GVVSVAAHPSGIIAASASLDSFVRVFDVDTNASIATLEASPSEVWQMQFDPKGTTLAVAGGGSASVKLWDTATWNLIATL  141 (315)
Q Consensus        62 ~v~~~~~~~~g~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~  141 (315)
                      .+..+++.|+|.++++...+++|+.|+....  ...+......+..++++|+++ ++++...++.+..++..........
T Consensus        29 ~~e~iAv~pdG~l~vt~~~~~~I~~i~p~g~--~~~~~~~~~~~~gla~~~dG~-l~v~~~~~~~~~~~~~~~~~~~~~~  105 (302)
T d2p4oa1          29 FLENLASAPDGTIFVTNHEVGEIVSITPDGN--QQIHATVEGKVSGLAFTSNGD-LVATGWNADSIPVVSLVKSDGTVET  105 (302)
T ss_dssp             CEEEEEECTTSCEEEEETTTTEEEEECTTCC--EEEEEECSSEEEEEEECTTSC-EEEEEECTTSCEEEEEECTTSCEEE
T ss_pred             CcCCEEECCCCCEEEEeCCCCEEEEEeCCCC--EEEEEcCCCCcceEEEcCCCC-eEEEecCCceEEEEEecccccceee
Confidence            3668899999999999999999988886543  333444556789999999998 4556666677777765432211110


Q ss_pred             cCCCCCCCCCCccCCCCcceEEEEECCCCCEEEEecCCCcEEEEEcccceeeeeec----------CCccceEEEEEcCC
Q 021247          142 SIPRPEGLKPTDKSSSKKFVLSVAWSPDGRRIACGSMDGTISVFDVTRAKFLHHLE----------GHFMPVRSLVYSPV  211 (315)
Q Consensus       142 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~s~dg~i~i~d~~~~~~~~~~~----------~~~~~v~~~~~~~~  211 (315)
                      ...          .........+++.++++++++.+.++.+..+|...+.......          ........+.+.  
T Consensus       106 ~~~----------~~~~~~~n~i~~~~~g~~~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ngi~~~--  173 (302)
T d2p4oa1         106 LLT----------LPDAIFLNGITPLSDTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGLKRF--  173 (302)
T ss_dssp             EEE----------CTTCSCEEEEEESSSSEEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEEEEEE--
T ss_pred             ccc----------cCCccccceeEEccCCCEEeeccccccceeeeccCCcceeEecCCccceeeccCccccccccccc--
Confidence            000          0112336789999999999988889999999987665332211          111234556654  


Q ss_pred             CCcEEEEEeCCCeEEEEeCCCCeeEE--EeecccccEEEEEEcCCCCeEEEEeCCCcEEEEecCccc-eehcccccccce
Q 021247          212 DPRVLFSASDDTHVHMYDAEGKSLVT--AMSGHASWVLSVDASPDGAAITTGSSDRTVKLWDLNMRA-AMQSMTNHTDQV  288 (315)
Q Consensus       212 ~~~~l~s~~~d~~i~~wd~~~~~~~~--~~~~~~~~i~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~-~~~~~~~~~~~v  288 (315)
                      +..++++.+..+.|..++........  ...........++++++|.+.++...+++|..++...+. .+.+....-...
T Consensus       174 ~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~pdgia~d~dG~l~va~~~~~~V~~i~p~G~~~~~~~~~~~~~~p  253 (302)
T d2p4oa1         174 GNFLYVSNTEKMLLLRIPVDSTDKPGEPEIFVEQTNIDDFAFDVEGNLYGATHIYNSVVRIAPDRSTTIIAQAEQGVIGS  253 (302)
T ss_dssp             TTEEEEEETTTTEEEEEEBCTTSCBCCCEEEEESCCCSSEEEBTTCCEEEECBTTCCEEEECTTCCEEEEECGGGTCTTE
T ss_pred             CCceeeecCCCCeEEeccccccccccccccccCCCCCcceEECCCCCEEEEEcCCCcEEEECCCCCEEEEEecCCCCCCc
Confidence            45677788888999998876432211  111122335578999999988888889999999776432 233333334568


Q ss_pred             EEEEE---eeCCCEEEEEeCC
Q 021247          289 WGVSF---RPLGGRVVSVSDD  306 (315)
Q Consensus       289 ~~~~~---s~~~~~l~s~~~d  306 (315)
                      ++++|   ++|++.|+.++..
T Consensus       254 t~vafg~~~~D~~~Lyvtt~~  274 (302)
T d2p4oa1         254 TAVAFGQTEGDCTAIYVVTNG  274 (302)
T ss_dssp             EEEEECCSTTTTTEEEEEECT
T ss_pred             eEEEEcCCCCCCCEEEEECCC
Confidence            89999   6788888665543

>d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Serine/threonine-protein kinase PknD
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.35  E-value=7e-10  Score=87.19  Aligned_cols=238  Identities=11%  Similarity=0.025  Sum_probs=149.1

Q ss_pred             ceEEEEEeecCCCCCcEEEEeeCCCcEEEEcCCCCcceeeccccccceEEEEeCCCCCEEEEeeCCCeEEEEECCCCcee
Q 021247           16 SVWAVTWVPATETRPALLLTGSLDETVKLWRPDDMQLERTNTGHCLGVVSVAAHPSGIIAASASLDSFVRVFDVDTNASI   95 (315)
Q Consensus        16 ~v~~v~~~~~~~~~~~~l~sgs~d~~v~~w~~~~~~~~~~~~~h~~~v~~~~~~~~g~~l~s~~~d~~i~~w~~~~~~~~   95 (315)
                      .-.+|++.+.++   -+++..+..+.+..++...........+-......++++++|.++++....+.+++++..+...+
T Consensus        15 ~P~~vavd~dG~---i~v~~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~gvav~~~g~i~v~d~~~~~i~~~~~~~~~~~   91 (260)
T d1rwia_          15 SPSGVAVDSAGN---VYVTSEGMYGRVVKLATGSTGTTVLPFNGLYQPQGLAVDGAGTVYVTDFNNRVVTLAAGSNNQTV   91 (260)
T ss_dssp             CEEEEEECTTCC---EEEEECSSSCEEEEEC----CEEECCCCSCCSCCCEEECTTCCEEEEETTTEEEEECTTCSCCEE
T ss_pred             CCCEEEEcCCCC---EEEEEcCCCCEEEEEcCCCceEEEeccCCccCceEEEEcCCCCEEEeeeeeceeeeeeeccceee
Confidence            457888876554   23334455677777776544332222222234567889999998888777777777655544433


Q ss_pred             EEeeCCcccEEEEEECCCCCeEEEEecCCCeEEEEecCCcceeeeecCCCCCCCCCCccCCCCcceEEEEECCCCCEEEE
Q 021247           96 ATLEASPSEVWQMQFDPKGTTLAVAGGGSASVKLWDTATWNLIATLSIPRPEGLKPTDKSSSKKFVLSVAWSPDGRRIAC  175 (315)
Q Consensus        96 ~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~  175 (315)
                      .... .......++++++++.+ ++-..+..+..++....... ....            ........++++++++.+++
T Consensus        92 ~~~~-~~~~p~~iavd~~g~i~-v~d~~~~~~~~~~~~~~~~~-~~~~------------~~~~~p~~i~~~~~g~~~v~  156 (260)
T d1rwia_          92 LPFD-GLNYPEGLAVDTQGAVY-VADRGNNRVVKLAAGSKTQT-VLPF------------TGLNDPDGVAVDNSGNVYVT  156 (260)
T ss_dssp             CCCC-SCCSEEEEEECTTCCEE-EEEGGGTEEEEECTTCSSCE-ECCC------------CSCCSCCEEEECTTCCEEEE
T ss_pred             eeee-eeeecccccccccceeE-eeccccccccccccccceee-eeee------------cccCCcceeeecCCCCEeee
Confidence            2222 22456789999988744 44455566766665442211 1100            01112468899999998888


Q ss_pred             ecCCCcEEEEEcccceeeeeecCCccceEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCeeEEEeecccccEEEEEEcCCC
Q 021247          176 GSMDGTISVFDVTRAKFLHHLEGHFMPVRSLVYSPVDPRVLFSASDDTHVHMYDAEGKSLVTAMSGHASWVLSVDASPDG  255 (315)
Q Consensus       176 ~s~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~i~~~~~~~~~  255 (315)
                      ...++.|..+|...................+++.+ +++++++....+.|..++..+................++++++|
T Consensus       157 ~~~~~~i~~~d~~~~~~~~~~~~~~~~p~gi~~d~-~g~l~vsd~~~~~i~~~~~~~~~~~~~~~~~~~~P~~i~~d~~g  235 (260)
T d1rwia_         157 DTDNNRVVKLEAESNNQVVLPFTDITAPWGIAVDE-AGTVYVTEHNTNQVVKLLAGSTTSTVLPFTGLNTPLAVAVDSDR  235 (260)
T ss_dssp             EGGGTEEEEECTTTCCEEECCCSSCCSEEEEEECT-TCCEEEEETTTTEEEEECTTCSCCEECCCCSCCCEEEEEECTTC
T ss_pred             ccccccccccccccceeeeeeccccCCCccceeee-eeeeeeeecCCCEEEEEeCCCCeEEEEccCCCCCeEEEEEeCCC
Confidence            88888999999875544333334445568899987 56788888888899989876553332222333567899999999


Q ss_pred             CeEEEEeCCCcEEEEec
Q 021247          256 AAITTGSSDRTVKLWDL  272 (315)
Q Consensus       256 ~~l~s~~~d~~i~iwd~  272 (315)
                      .++++-..+++|+.++.
T Consensus       236 ~l~vad~~~~rI~~i~~  252 (260)
T d1rwia_         236 TVYVADRGNDRVVKLTS  252 (260)
T ss_dssp             CEEEEEGGGTEEEEECC
T ss_pred             CEEEEECCCCEEEEEeC
Confidence            88887777777765543

>d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Lactonase Drp35
species: Staphylococcus aureus [TaxId: 1280]

Probab=99.28  E-value=3e-08  Score=80.10  Aligned_cols=231  Identities=8%  Similarity=0.026  Sum_probs=148.2

Q ss_pred             ceEEEEeCCCCCEEEEeeCCCeEEEEECCCCceeEEeeCCcccEEEEEECCCCCeEEEEecC---CCeEEEEecCCccee
Q 021247           62 GVVSVAAHPSGIIAASASLDSFVRVFDVDTNASIATLEASPSEVWQMQFDPKGTTLAVAGGG---SASVKLWDTATWNLI  138 (315)
Q Consensus        62 ~v~~~~~~~~g~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~---d~~i~~~d~~~~~~~  138 (315)
                      .+-.+.|.++|++.++-...+.|+.|+..++.....+.........++++++|+.+++..+.   .+.+...+.......
T Consensus        41 ~lEG~~~D~~G~Ly~~D~~~g~I~ri~p~g~~~~~~~~~~~~~p~gla~~~dG~l~va~~~~~~~~~~i~~~~~~~~~~~  120 (319)
T d2dg1a1          41 QLEGLNFDRQGQLFLLDVFEGNIFKINPETKEIKRPFVSHKANPAAIKIHKDGRLFVCYLGDFKSTGGIFAATENGDNLQ  120 (319)
T ss_dssp             CEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECSSSSEEEEEECTTSCEEEEECTTSSSCCEEEEECTTSCSCE
T ss_pred             CcEeCEECCCCCEEEEECCCCEEEEEECCCCeEEEEEeCCCCCeeEEEECCCCCEEEEecCCCccceeEEEEcCCCceee
Confidence            34678899999988888888999999988776655555555667899999998755433221   233444554443332


Q ss_pred             eeecCCCCCCCCCCccCCCCcceEEEEECCCCCEEEEecC------CCcEEEEEcccceeeeeecCCccceEEEEEcCCC
Q 021247          139 ATLSIPRPEGLKPTDKSSSKKFVLSVAWSPDGRRIACGSM------DGTISVFDVTRAKFLHHLEGHFMPVRSLVYSPVD  212 (315)
Q Consensus       139 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~s~------dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~  212 (315)
                      ..... .          ........+++.++|++.++...      .+.+..++..... +..+.......+.++|+|++
T Consensus       121 ~~~~~-~----------~~~~~~nd~~~d~~G~l~vtd~~~~~~~~~g~v~~~~~dg~~-~~~~~~~~~~pnGia~s~dg  188 (319)
T d2dg1a1         121 DIIED-L----------STAYCIDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPDFRT-VTPIIQNISVANGIALSTDE  188 (319)
T ss_dssp             EEECS-S----------SSCCCEEEEEECTTSCEEEEECCCBTTBCCEEEEEECTTSCC-EEEEEEEESSEEEEEECTTS
T ss_pred             eeccC-C----------CcccCCcceeEEeccceeecccccccccCcceeEEEecccce-eEEEeeccceeeeeeecccc
Confidence            22210 0          11223678999999987665432      2346656554322 22222223345789999966


Q ss_pred             CcEEEEEeCCCeEEEEeCCCC-eeEEE-------eecccccEEEEEEcCCCCeEEEEeCCCcEEEEecCccceehccc--
Q 021247          213 PRVLFSASDDTHVHMYDAEGK-SLVTA-------MSGHASWVLSVDASPDGAAITTGSSDRTVKLWDLNMRAAMQSMT--  282 (315)
Q Consensus       213 ~~~l~s~~~d~~i~~wd~~~~-~~~~~-------~~~~~~~i~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~--  282 (315)
                      ..++++-+..+.|..|++... .....       ........-.++++++|++.++...++.|.+|+- .++.+..+.  
T Consensus       189 ~~lyvad~~~~~I~~~d~~~~g~~~~~~~~~~~~~~~~~~~PdGl~vD~~G~l~Va~~~~g~V~~~~p-~G~~l~~i~~P  267 (319)
T d2dg1a1         189 KVLWVTETTANRLHRIALEDDGVTIQPFGATIPYYFTGHEGPDSCCIDSDDNLYVAMYGQGRVLVFNK-RGYPIGQILIP  267 (319)
T ss_dssp             SEEEEEEGGGTEEEEEEECTTSSSEEEEEEEEEEECCSSSEEEEEEEBTTCCEEEEEETTTEEEEECT-TSCEEEEEECT
T ss_pred             ceEEEecccCCceEEEEEcCCCceeccccceeeeccCCccceeeeeEcCCCCEEEEEcCCCEEEEECC-CCcEEEEEeCC
Confidence            556777788899999987532 11111       1111233567999999998888888999999995 566665543  


Q ss_pred             ----ccccceEEEEEeeCCCEEEEEeC
Q 021247          283 ----NHTDQVWGVSFRPLGGRVVSVSD  305 (315)
Q Consensus       283 ----~~~~~v~~~~~s~~~~~l~s~~~  305 (315)
                          ++...+++++|.|.+..++....
T Consensus       268 ~~~~~~~~~~~~~~~~~~~~~~~~t~~  294 (319)
T d2dg1a1         268 GRDEGHMLRSTHPQFIPGTNQLIICSN  294 (319)
T ss_dssp             TGGGTCSCBCCEEEECTTSCEEEEEEE
T ss_pred             CcCCCcCceeeeEEEeCCCCEEEEEcC
Confidence                23346789999998887765544

>d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP)
species: Squid (Loligo vulgaris) [TaxId: 6622]

Probab=99.26  E-value=3.2e-08  Score=79.68  Aligned_cols=240  Identities=12%  Similarity=0.144  Sum_probs=150.6

Q ss_pred             eEEEEeCCCCCEEEEeeC-------CCeEEEEECCCCceeEEeeCC----cccEEEEEECCCCCeEEEEecCCCeEEEEe
Q 021247           63 VVSVAAHPSGIIAASASL-------DSFVRVFDVDTNASIATLEAS----PSEVWQMQFDPKGTTLAVAGGGSASVKLWD  131 (315)
Q Consensus        63 v~~~~~~~~g~~l~s~~~-------d~~i~~w~~~~~~~~~~~~~~----~~~v~~~~~~~~~~~~~~~~~~d~~i~~~d  131 (315)
                      .-.++++++|+++++...       ++.|..||..++.........    ...-..+.++++++.++++. ....+..+|
T Consensus        20 ~EGpa~d~dG~ly~~~~~~~~~~~~~g~I~r~d~~~~~~~~~~~~~~~~~~g~P~Gl~~~~dg~~l~vad-~~~~i~~~~   98 (314)
T d1pjxa_          20 AEGPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKPEVNGYGGIPAGCQCDRDANQLFVAD-MRLGLLVVQ   98 (314)
T ss_dssp             CEEEEECTTSCEEEEETTCEETTEECCEEEEECTTTCCEEEEECCEETTEECCEEEEEECSSSSEEEEEE-TTTEEEEEE
T ss_pred             CeEeEEeCCCCEEEEECccccccccCCEEEEEECCCCcEEEEECCccccCCCcceeEEEeCCCCEEEEEE-CCCeEEEEe
Confidence            455688999988776432       467888898877654332211    12356899999998766554 445677788


Q ss_pred             cCCcceeeeecCCCCCCCCCCccCCCCcceEEEEECCCCCEEEEecC---------------CCcEEEEEcccceeeeee
Q 021247          132 TATWNLIATLSIPRPEGLKPTDKSSSKKFVLSVAWSPDGRRIACGSM---------------DGTISVFDVTRAKFLHHL  196 (315)
Q Consensus       132 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~s~---------------dg~i~i~d~~~~~~~~~~  196 (315)
                      ....... .+. ...++.       .-...+.+++.++|+..++-..               .|.|+.++.. ++... +
T Consensus        99 ~~g~~~~-~~~-~~~~g~-------~~~~pndl~~d~~G~lyvtd~~~~~~~~~~~~~~~~~~G~v~~~~~d-g~~~~-~  167 (314)
T d1pjxa_          99 TDGTFEE-IAK-KDSEGR-------RMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTD-GQMIQ-V  167 (314)
T ss_dssp             TTSCEEE-CCS-BCTTSC-------BCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTT-SCEEE-E
T ss_pred             CCCcEEE-EEe-cccccc-------ccCCCcEEEECCCCCEEEecCccCcccccccceeccCCceEEEEeec-CceeE-e
Confidence            7543221 111 011100       0112467899999987776321               3455555543 22222 2


Q ss_pred             cCCccceEEEEEcCCCC----cEEEEEeCCCeEEEEeCCCC-eeE-----EEeec-ccccEEEEEEcCCCCeEEEEeCCC
Q 021247          197 EGHFMPVRSLVYSPVDP----RVLFSASDDTHVHMYDAEGK-SLV-----TAMSG-HASWVLSVDASPDGAAITTGSSDR  265 (315)
Q Consensus       197 ~~~~~~v~~~~~~~~~~----~~l~s~~~d~~i~~wd~~~~-~~~-----~~~~~-~~~~i~~~~~~~~~~~l~s~~~d~  265 (315)
                      .......+.++|+|.+.    .++++-+..+.|..||+... .+.     ..+.+ +....-.++++++|++.++....+
T Consensus       168 ~~~~~~pNGi~~~~d~d~~~~~lyv~d~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~~pdGiavD~~GnlyVa~~~~g  247 (314)
T d1pjxa_         168 DTAFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDEDNNLLVANWGSS  247 (314)
T ss_dssp             EEEESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBTTCCEEEEEETTT
T ss_pred             eCCcceeeeeEECCCCCcceeEEEEEeecccceEEeeccCccccceeeEEEEccccccccceeeEEecCCcEEEEEcCCC
Confidence            22223446788987543    35566677889999986532 221     11111 223456799999999888888889


Q ss_pred             cEEEEecCccceehcccccccceEEEEEeeCCCEE-EEEeCCCcEEEeec
Q 021247          266 TVKLWDLNMRAAMQSMTNHTDQVWGVSFRPLGGRV-VSVSDDKSISLYEY  314 (315)
Q Consensus       266 ~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l-~s~~~d~~i~i~~~  314 (315)
                      .|.+||.+.+.....+......+++++|.|+++.| ++.+..++|..+++
T Consensus       248 ~I~~~dp~~g~~~~~i~~p~~~~t~~afg~d~~~lyVt~~~~g~i~~~~~  297 (314)
T d1pjxa_         248 HIEVFGPDGGQPKMRIRCPFEKPSNLHFKPQTKTIFVTEHENNAVWKFEW  297 (314)
T ss_dssp             EEEEECTTCBSCSEEEECSSSCEEEEEECTTSSEEEEEETTTTEEEEEEC
T ss_pred             EEEEEeCCCCEEEEEEECCCCCEEEEEEeCCCCEEEEEECCCCcEEEEEC
Confidence            99999988777666666556788999999999755 67777888887765

>d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: TolB, C-terminal domain
family: TolB, C-terminal domain
domain: TolB, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=99.25  E-value=5.8e-08  Score=76.07  Aligned_cols=238  Identities=14%  Similarity=0.129  Sum_probs=137.8

Q ss_pred             cEEEEcCCCCcceeeccccccceEEEEeCCCCCEEEEeeCCC---eEEEEECCCCceeEEeeCCcccEEEEEECCCCCeE
Q 021247           41 TVKLWRPDDMQLERTNTGHCLGVVSVAAHPSGIIAASASLDS---FVRVFDVDTNASIATLEASPSEVWQMQFDPKGTTL  117 (315)
Q Consensus        41 ~v~~w~~~~~~~~~~~~~h~~~v~~~~~~~~g~~l~s~~~d~---~i~~w~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~  117 (315)
                      .|.+-|.+.... +.+..+...+.+-+|+|||+.|+-...+.   .+.+.+...+.. ..+..+........|+|++..+
T Consensus        20 ~l~i~d~dG~~~-~~l~~~~~~~~sP~wSPDGk~IAf~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~spdg~~i   97 (269)
T d2hqsa1          20 ELRVSDYDGYNQ-FVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAV-RQVASFPRHNGAPAFSPDGSKL   97 (269)
T ss_dssp             EEEEEETTSCSC-EEEEEESSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCE-EEEECCSSCEEEEEECTTSSEE
T ss_pred             EEEEEcCCCCCc-EEEecCCCceeeeEECCCCCEEEEEEeeccCcceeeeecccCce-eEEeeeecccccceecCCCCee
Confidence            355555554333 33333456678899999999988543332   366666655544 3444556777888999999988


Q ss_pred             EEEecCCCeEEEEecCCcceeeeecCCCCCCCCCCccCCCCcceEEEEECCCCCEEE-EecCCCc--EEEEEcccceeee
Q 021247          118 AVAGGGSASVKLWDTATWNLIATLSIPRPEGLKPTDKSSSKKFVLSVAWSPDGRRIA-CGSMDGT--ISVFDVTRAKFLH  194 (315)
Q Consensus       118 ~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~-~~s~dg~--i~i~d~~~~~~~~  194 (315)
                      +......+...++...........            ............++++++.++ +...++.  |...++..+... 
T Consensus        98 ~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~~~~~~~~~~~-  164 (269)
T d2hqsa1          98 AFALSKTGSLNLYVMDLASGQIRQ------------VTDGRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNINGGAPQ-  164 (269)
T ss_dssp             EEEECTTSSCEEEEEETTTCCEEE------------CCCCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCCE-
T ss_pred             eEeeecCCccceeeccccccccee------------eeeccccccccccccccccceecccccCCceEeeeecccccce-
Confidence            776655544433332221111000            001111233456677666554 4444554  555666554332 


Q ss_pred             eecCCccceEEEEEcCCCCcEEEEEeCCCe--EEEEeCCCCeeEEEeecccccEEEEEEcCCCCeEEEEeC---CCcEEE
Q 021247          195 HLEGHFMPVRSLVYSPVDPRVLFSASDDTH--VHMYDAEGKSLVTAMSGHASWVLSVDASPDGAAITTGSS---DRTVKL  269 (315)
Q Consensus       195 ~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~--i~~wd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~---d~~i~i  269 (315)
                      .+...........|+|++..++......+.  +.+.+...+..  ....+........|+|||+.|+-.+.   ...+.+
T Consensus       165 ~~~~~~~~~~~~~~spdg~~~~~~~~~~~~~~i~~~~~~~~~~--~~~~~~~~~~~p~~SPDG~~i~f~s~~~~~~~l~~  242 (269)
T d2hqsa1         165 RITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGV--QVLSSTFLDETPSLAPNGTMVIYSSSQGMGSVLNL  242 (269)
T ss_dssp             ECCCSSSEEEEEEECTTSSEEEEEEECSSCEEEEEEETTTCCE--EECCCSSSCEEEEECTTSSEEEEEEEETTEEEEEE
T ss_pred             eeecccccccccccccccceeEEEeecCCceeeeEeecccccc--eEeecCccccceEECCCCCEEEEEEcCCCCcEEEE
Confidence            333445566778899965555555555554  44455554433  23334555677889999998764433   346888


Q ss_pred             EecCccceehcccccccceEEEEEeeC
Q 021247          270 WDLNMRAAMQSMTNHTDQVWGVSFRPL  296 (315)
Q Consensus       270 wd~~~~~~~~~~~~~~~~v~~~~~s~~  296 (315)
                      ++++.+.. ..+....+.+...+|||-
T Consensus       243 ~~~dg~~~-~~lt~~~g~~~~p~WSP~  268 (269)
T d2hqsa1         243 VSTDGRFK-ARLPATDGQVKFPAWSPY  268 (269)
T ss_dssp             EETTSCCE-EECCCSSSEEEEEEECCC
T ss_pred             EECCCCCE-EEEeCCCCcEEeEEeCCC
Confidence            99986554 345555667788899983

>d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP)
species: Squid (Loligo vulgaris) [TaxId: 6622]

Probab=99.21  E-value=4.8e-08  Score=78.62  Aligned_cols=237  Identities=10%  Similarity=0.061  Sum_probs=145.5

Q ss_pred             eEEEEEeecCCCCCcEEEEee-------CCCcEEEEcCCCCcceeeccc----cccceEEEEeCCCCCEEEEeeCCCeEE
Q 021247           17 VWAVTWVPATETRPALLLTGS-------LDETVKLWRPDDMQLERTNTG----HCLGVVSVAAHPSGIIAASASLDSFVR   85 (315)
Q Consensus        17 v~~v~~~~~~~~~~~~l~sgs-------~d~~v~~w~~~~~~~~~~~~~----h~~~v~~~~~~~~g~~l~s~~~d~~i~   85 (315)
                      .-+++|.|.++    +.++..       .+|.|..|++.+.+.......    .......+.+.++|..++.+...+.+.
T Consensus        20 ~EGpa~d~dG~----ly~~~~~~~~~~~~~g~I~r~d~~~~~~~~~~~~~~~~~~g~P~Gl~~~~dg~~l~vad~~~~i~   95 (314)
T d1pjxa_          20 AEGPVFDKNGD----FYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKPEVNGYGGIPAGCQCDRDANQLFVADMRLGLL   95 (314)
T ss_dssp             CEEEEECTTSC----EEEEETTCEETTEECCEEEEECTTTCCEEEEECCEETTEECCEEEEEECSSSSEEEEEETTTEEE
T ss_pred             CeEeEEeCCCC----EEEEECccccccccCCEEEEEECCCCcEEEEECCccccCCCcceeEEEeCCCCEEEEEECCCeEE
Confidence            35667877664    233221       146788898877665433221    122357899999998877777777788


Q ss_pred             EEECCCCceeEEeeCCc----ccEEEEEECCCCCeEEEEecC---------------CCeEEEEecCCcceeeeecCCCC
Q 021247           86 VFDVDTNASIATLEASP----SEVWQMQFDPKGTTLAVAGGG---------------SASVKLWDTATWNLIATLSIPRP  146 (315)
Q Consensus        86 ~w~~~~~~~~~~~~~~~----~~v~~~~~~~~~~~~~~~~~~---------------d~~i~~~d~~~~~~~~~~~~~~~  146 (315)
                      ..+.+............    .....+.++++|+.. ++...               .+.|..++.. ++.....     
T Consensus        96 ~~~~~g~~~~~~~~~~~g~~~~~pndl~~d~~G~ly-vtd~~~~~~~~~~~~~~~~~~G~v~~~~~d-g~~~~~~-----  168 (314)
T d1pjxa_          96 VVQTDGTFEEIAKKDSEGRRMQGCNDCAFDYEGNLW-ITAPAGEVAPADYTRSMQEKFGSIYCFTTD-GQMIQVD-----  168 (314)
T ss_dssp             EEETTSCEEECCSBCTTSCBCBCCCEEEECTTSCEE-EEECBCBCTTSCCCBTTSSSCEEEEEECTT-SCEEEEE-----
T ss_pred             EEeCCCcEEEEEeccccccccCCCcEEEECCCCCEE-EecCccCcccccccceeccCCceEEEEeec-CceeEee-----
Confidence            88876553321111111    124678889988754 44211               1223333321 1111110     


Q ss_pred             CCCCCCccCCCCcceEEEEECCCCC-----EEEEecCCCcEEEEEcccceee------eeecC-CccceEEEEEcCCCCc
Q 021247          147 EGLKPTDKSSSKKFVLSVAWSPDGR-----RIACGSMDGTISVFDVTRAKFL------HHLEG-HFMPVRSLVYSPVDPR  214 (315)
Q Consensus       147 ~~~~~~~~~~~~~~i~~~~~~~~~~-----~l~~~s~dg~i~i~d~~~~~~~------~~~~~-~~~~v~~~~~~~~~~~  214 (315)
                               ..-...+.++|+|+++     ++++-+..+.|..||+.....+      ..+.. .......+++.+ +++
T Consensus       169 ---------~~~~~pNGi~~~~d~d~~~~~lyv~d~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~~pdGiavD~-~Gn  238 (314)
T d1pjxa_         169 ---------TAFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDE-DNN  238 (314)
T ss_dssp             ---------EEESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBT-TCC
T ss_pred             ---------CCcceeeeeEECCCCCcceeEEEEEeecccceEEeeccCccccceeeEEEEccccccccceeeEEec-CCc
Confidence                     0011245789988764     4456678889999987533221      12222 122356788886 677


Q ss_pred             EEEEEeCCCeEEEEeCCCCeeEEEeecccccEEEEEEcCCCC-eEEEEeCCCcEEEEecCc
Q 021247          215 VLFSASDDTHVHMYDAEGKSLVTAMSGHASWVLSVDASPDGA-AITTGSSDRTVKLWDLNM  274 (315)
Q Consensus       215 ~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~i~~~~~~~~~~-~l~s~~~d~~i~iwd~~~  274 (315)
                      ++++....+.|.+||.+++..+..+......+.+++|.|+++ +++|.+.++.|..+++..
T Consensus       239 lyVa~~~~g~I~~~dp~~g~~~~~i~~p~~~~t~~afg~d~~~lyVt~~~~g~i~~~~~~~  299 (314)
T d1pjxa_         239 LLVANWGSSHIEVFGPDGGQPKMRIRCPFEKPSNLHFKPQTKTIFVTEHENNAVWKFEWQR  299 (314)
T ss_dssp             EEEEEETTTEEEEECTTCBSCSEEEECSSSCEEEEEECTTSSEEEEEETTTTEEEEEECSS
T ss_pred             EEEEEcCCCEEEEEeCCCCEEEEEEECCCCCEEEEEEeCCCCEEEEEECCCCcEEEEECCC
Confidence            888888889999999998877666665566788999999987 557777788888888754

>d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: TolB, C-terminal domain
family: TolB, C-terminal domain
domain: TolB, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=99.19  E-value=6.2e-08  Score=75.86  Aligned_cols=213  Identities=20%  Similarity=0.207  Sum_probs=123.5

Q ss_pred             eEEEEECCCCceeEEeeCCcccEEEEEECCCCCeEEEEecCCC--eEEEEecCCcceeeeecCCCCCCCCCCccCCCCcc
Q 021247           83 FVRVFDVDTNASIATLEASPSEVWQMQFDPKGTTLAVAGGGSA--SVKLWDTATWNLIATLSIPRPEGLKPTDKSSSKKF  160 (315)
Q Consensus        83 ~i~~w~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~--~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  160 (315)
                      .|.+-|...... ..+......+..-+|+|+|+.++++....+  .+.+.+..........              .....
T Consensus        20 ~l~i~d~dG~~~-~~l~~~~~~~~sP~wSPDGk~IAf~~~~~~~~~~~~~~~~~~~~~~~~--------------~~~~~   84 (269)
T d2hqsa1          20 ELRVSDYDGYNQ-FVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQVA--------------SFPRH   84 (269)
T ss_dssp             EEEEEETTSCSC-EEEEEESSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEEEEE--------------CCSSC
T ss_pred             EEEEEcCCCCCc-EEEecCCCceeeeEECCCCCEEEEEEeeccCcceeeeecccCceeEEe--------------eeecc
Confidence            477777654433 333345667888999999999988765554  4555555544332222              12234


Q ss_pred             eEEEEECCCCCEEEEecC-CCcE--EEEEcccceeeeeecCCccceEEEEEcCCCCcEEEEEeCCCe--EEEEeCCCCee
Q 021247          161 VLSVAWSPDGRRIACGSM-DGTI--SVFDVTRAKFLHHLEGHFMPVRSLVYSPVDPRVLFSASDDTH--VHMYDAEGKSL  235 (315)
Q Consensus       161 i~~~~~~~~~~~l~~~s~-dg~i--~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~--i~~wd~~~~~~  235 (315)
                      .....|+|+|+.++.... ++..  ..+....... ..............+++.+...+++...++.  |.+.+......
T Consensus        85 ~~~~~~spdg~~i~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~~~~~~~~~~  163 (269)
T d2hqsa1          85 NGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQI-RQVTDGRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNINGGAP  163 (269)
T ss_dssp             EEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCE-EECCCCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCC
T ss_pred             cccceecCCCCeeeEeeecCCccceeecccccccc-eeeeeccccccccccccccccceecccccCCceEeeeecccccc
Confidence            678899999998876543 3332  2232222222 2222233334455566655556666666654  55566655533


Q ss_pred             EEEeecccccEEEEEEcCCCCeEEEEeCC-CcEEEE--ecCccceehcccccccceEEEEEeeCCCEEEEEeCC---CcE
Q 021247          236 VTAMSGHASWVLSVDASPDGAAITTGSSD-RTVKLW--DLNMRAAMQSMTNHTDQVWGVSFRPLGGRVVSVSDD---KSI  309 (315)
Q Consensus       236 ~~~~~~~~~~i~~~~~~~~~~~l~s~~~d-~~i~iw--d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d---~~i  309 (315)
                       ..+...........++|+++.++..+.+ +...+|  +...+..  ....+........|||||++|+..+..   ..|
T Consensus       164 -~~~~~~~~~~~~~~~spdg~~~~~~~~~~~~~~i~~~~~~~~~~--~~~~~~~~~~~p~~SPDG~~i~f~s~~~~~~~l  240 (269)
T d2hqsa1         164 -QRITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGV--QVLSSTFLDETPSLAPNGTMVIYSSSQGMGSVL  240 (269)
T ss_dssp             -EECCCSSSEEEEEEECTTSSEEEEEEECSSCEEEEEEETTTCCE--EECCCSSSCEEEEECTTSSEEEEEEEETTEEEE
T ss_pred             -eeeecccccccccccccccceeEEEeecCCceeeeEeecccccc--eEeecCccccceEECCCCCEEEEEEcCCCCcEE
Confidence             2333445566778899999987665554 444444  4443332  233344556778999999999755543   355


Q ss_pred             EEeec
Q 021247          310 SLYEY  314 (315)
Q Consensus       310 ~i~~~  314 (315)
                      .+++.
T Consensus       241 ~~~~~  245 (269)
T d2hqsa1         241 NLVST  245 (269)
T ss_dssp             EEEET
T ss_pred             EEEEC
Confidence            56554

>d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: All0351-like
domain: Hypothetical protein All0351 homologue
species: Nostoc punctiforme [TaxId: 272131]

Probab=99.18  E-value=4.4e-08  Score=78.42  Aligned_cols=237  Identities=10%  Similarity=-0.021  Sum_probs=150.9

Q ss_pred             ceEEEEEeecCCCCCcEEEEeeCCCcEEEEcCCCCcceeeccccccceEEEEeCCCCCEEEEeeCCCeEEEEECCCCce-
Q 021247           16 SVWAVTWVPATETRPALLLTGSLDETVKLWRPDDMQLERTNTGHCLGVVSVAAHPSGIIAASASLDSFVRVFDVDTNAS-   94 (315)
Q Consensus        16 ~v~~v~~~~~~~~~~~~l~sgs~d~~v~~w~~~~~~~~~~~~~h~~~v~~~~~~~~g~~l~s~~~d~~i~~w~~~~~~~-   94 (315)
                      .+..+++.|++.    ++++...+++|..|+++...  ..+......+..++++++|.++++...++.+..|+...... 
T Consensus        29 ~~e~iAv~pdG~----l~vt~~~~~~I~~i~p~g~~--~~~~~~~~~~~gla~~~dG~l~v~~~~~~~~~~~~~~~~~~~  102 (302)
T d2p4oa1          29 FLENLASAPDGT----IFVTNHEVGEIVSITPDGNQ--QIHATVEGKVSGLAFTSNGDLVATGWNADSIPVVSLVKSDGT  102 (302)
T ss_dssp             CEEEEEECTTSC----EEEEETTTTEEEEECTTCCE--EEEEECSSEEEEEEECTTSCEEEEEECTTSCEEEEEECTTSC
T ss_pred             CcCCEEECCCCC----EEEEeCCCCEEEEEeCCCCE--EEEEcCCCCcceEEEcCCCCeEEEecCCceEEEEEecccccc
Confidence            467889998775    78888889999999876432  22333446789999999999999988888888888754322 


Q ss_pred             eEEe-e-CCcccEEEEEECCCCCeEEEEecCCCeEEEEecCCcceeeeecCCCCCCCCCCccCCCCcceEEEEECCCCCE
Q 021247           95 IATL-E-ASPSEVWQMQFDPKGTTLAVAGGGSASVKLWDTATWNLIATLSIPRPEGLKPTDKSSSKKFVLSVAWSPDGRR  172 (315)
Q Consensus        95 ~~~~-~-~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~  172 (315)
                      ...+ . ........+.+.++++ ++++...++.+..+|............+..   ..............+.+.. +..
T Consensus       103 ~~~~~~~~~~~~~n~i~~~~~g~-~~v~~~~~~~i~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~ngi~~~~-~~l  177 (302)
T d2p4oa1         103 VETLLTLPDAIFLNGITPLSDTQ-YLTADSYRGAIWLIDVVQPSGSIWLEHPML---ARSNSESVFPAANGLKRFG-NFL  177 (302)
T ss_dssp             EEEEEECTTCSCEEEEEESSSSE-EEEEETTTTEEEEEETTTTEEEEEEECGGG---SCSSTTCCSCSEEEEEEET-TEE
T ss_pred             eeeccccCCccccceeEEccCCC-EEeeccccccceeeeccCCcceeEecCCcc---ceeeccCcccccccccccC-Cce
Confidence            2222 1 2334578899999876 456667788888888776543222111100   0001111122355666653 345


Q ss_pred             EEEecCCCcEEEEEcccceeeee--ecCCccceEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCee-EEEeecccccEEEE
Q 021247          173 IACGSMDGTISVFDVTRAKFLHH--LEGHFMPVRSLVYSPVDPRVLFSASDDTHVHMYDAEGKSL-VTAMSGHASWVLSV  249 (315)
Q Consensus       173 l~~~s~dg~i~i~d~~~~~~~~~--~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~-~~~~~~~~~~i~~~  249 (315)
                      +++.+..+.|..+++........  ..........+++.+ ++.++++...++.|..++..++.. +..........+++
T Consensus       178 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~pdgia~d~-dG~l~va~~~~~~V~~i~p~G~~~~~~~~~~~~~~pt~v  256 (302)
T d2p4oa1         178 YVSNTEKMLLLRIPVDSTDKPGEPEIFVEQTNIDDFAFDV-EGNLYGATHIYNSVVRIAPDRSTTIIAQAEQGVIGSTAV  256 (302)
T ss_dssp             EEEETTTTEEEEEEBCTTSCBCCCEEEEESCCCSSEEEBT-TCCEEEECBTTCCEEEECTTCCEEEEECGGGTCTTEEEE
T ss_pred             eeecCCCCeEEeccccccccccccccccCCCCCcceEECC-CCCEEEEEcCCCcEEEECCCCCEEEEEecCCCCCCceEE
Confidence            56677888999988754332211  111223345788987 567888888889999998876532 23333344568899


Q ss_pred             EE---cCCCCeEEEEeCC
Q 021247          250 DA---SPDGAAITTGSSD  264 (315)
Q Consensus       250 ~~---~~~~~~l~s~~~d  264 (315)
                      +|   ++|++.|..++..
T Consensus       257 afg~~~~D~~~Lyvtt~~  274 (302)
T d2p4oa1         257 AFGQTEGDCTAIYVVTNG  274 (302)
T ss_dssp             EECCSTTTTTEEEEEECT
T ss_pred             EEcCCCCCCCEEEEECCC
Confidence            99   6677777655543

>d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Brain tumor cg10719-pa
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.17  E-value=2.5e-07  Score=72.98  Aligned_cols=239  Identities=12%  Similarity=0.191  Sum_probs=153.6

Q ss_pred             ceEEEEEeecCCCCCcEEEEeeCCCcEEEEcCCCCcceeecc------ccccceEEEEeCCC-CCEEE-EeeCCCeEEEE
Q 021247           16 SVWAVTWVPATETRPALLLTGSLDETVKLWRPDDMQLERTNT------GHCLGVVSVAAHPS-GIIAA-SASLDSFVRVF   87 (315)
Q Consensus        16 ~v~~v~~~~~~~~~~~~l~sgs~d~~v~~w~~~~~~~~~~~~------~h~~~v~~~~~~~~-g~~l~-s~~~d~~i~~w   87 (315)
                      ...+|+..|.++    ++++-..++.|++|+.+ ++....+.      +.......+.+.++ +..++ ..+.++.|..+
T Consensus        24 ~P~gvavd~dg~----i~VaD~~n~rI~v~d~~-G~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~i~~~   98 (279)
T d1q7fa_          24 EPSGVAVNAQND----IIVADTNNHRIQIFDKE-GRFKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSPTHQIQIY   98 (279)
T ss_dssp             CEEEEEECTTCC----EEEEEGGGTEEEEECTT-SCEEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECGGGCEEEEE
T ss_pred             CccEEEEcCCCC----EEEEECCCCEEEEEeCC-CCEEEEecccCCCcccccccccccccccccccceeccCCccccccc
Confidence            467888887654    56666677889999875 33333321      11223344554433 44444 34556678777


Q ss_pred             ECCCCceeEEee-CCcccEEEEEECCCCCeEEEEecCCCeEEEEecCCcceeeeecCCCCCCCCCCccCCCCcceEEEEE
Q 021247           88 DVDTNASIATLE-ASPSEVWQMQFDPKGTTLAVAGGGSASVKLWDTATWNLIATLSIPRPEGLKPTDKSSSKKFVLSVAW  166 (315)
Q Consensus        88 ~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~  166 (315)
                      +.. +.....+. ........+++.+++..+ ++......+.+++.. ++.+..+...           .+......+++
T Consensus        99 ~~~-g~~~~~~~~~~~~~p~~~avd~~G~i~-v~~~~~~~~~~~~~~-g~~~~~~g~~-----------~~~~~~~~i~~  164 (279)
T d1q7fa_          99 NQY-GQFVRKFGATILQHPRGVTVDNKGRII-VVECKVMRVIIFDQN-GNVLHKFGCS-----------KHLEFPNGVVV  164 (279)
T ss_dssp             CTT-SCEEEEECTTTCSCEEEEEECTTSCEE-EEETTTTEEEEECTT-SCEEEEEECT-----------TTCSSEEEEEE
T ss_pred             ccc-ccceeecCCCcccccceeccccCCcEE-EEeeccceeeEeccC-Cceeeccccc-----------ccccccceeee
Confidence            764 44444443 233456788899888744 555566778888764 3444444211           12234678899


Q ss_pred             CCCCCEEEEecCCCcEEEEEcccceeeeeec--CCccceEEEEEcCCCCcEEEEEe-CCCeEEEEeCCCCeeEEEeec--
Q 021247          167 SPDGRRIACGSMDGTISVFDVTRAKFLHHLE--GHFMPVRSLVYSPVDPRVLFSAS-DDTHVHMYDAEGKSLVTAMSG--  241 (315)
Q Consensus       167 ~~~~~~l~~~s~dg~i~i~d~~~~~~~~~~~--~~~~~v~~~~~~~~~~~~l~s~~-~d~~i~~wd~~~~~~~~~~~~--  241 (315)
                      .++++.+++....+.|++||.. ++.+..+.  +.......+++.| +++++++-. .++.|.+|+.. ++.+..+..  
T Consensus       165 d~~g~i~v~d~~~~~V~~~d~~-G~~~~~~g~~g~~~~P~giavD~-~G~i~Vad~~~~~~v~~f~~~-G~~~~~~~~~~  241 (279)
T d1q7fa_         165 NDKQEIFISDNRAHCVKVFNYE-GQYLRQIGGEGITNYPIGVGINS-NGEILIADNHNNFNLTIFTQD-GQLISALESKV  241 (279)
T ss_dssp             CSSSEEEEEEGGGTEEEEEETT-CCEEEEESCTTTSCSEEEEEECT-TCCEEEEECSSSCEEEEECTT-SCEEEEEEESS
T ss_pred             ccceeEEeeeccccceeeeecC-CceeeeecccccccCCccccccc-CCeEEEEECCCCcEEEEECCC-CCEEEEEeCCC
Confidence            9999988888889999999974 45555542  3445578899998 456776654 35579999865 455555432  


Q ss_pred             ccccEEEEEEcCCCCeEEEEeCCCcEEEEecCccce
Q 021247          242 HASWVLSVDASPDGAAITTGSSDRTVKLWDLNMRAA  277 (315)
Q Consensus       242 ~~~~i~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~  277 (315)
                      .......+++.|+|.+++ ++.+++|++|......+
T Consensus       242 ~~~~p~~vav~~dG~l~V-~~~n~~v~~fr~~~~~~  276 (279)
T d1q7fa_         242 KHAQCFDVALMDDGSVVL-ASKDYRLYIYRYVQLAP  276 (279)
T ss_dssp             CCSCEEEEEEETTTEEEE-EETTTEEEEEECSCCCC
T ss_pred             CCCCEeEEEEeCCCcEEE-EeCCCeEEEEEeeeecC
Confidence            234578999999997555 56799999998876543

>d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme
family: 3-carboxy-cis,cis-mucoante lactonizing enzyme
domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme
species: Neurospora crassa [TaxId: 5141]

Probab=99.07  E-value=2.2e-08  Score=82.49  Aligned_cols=245  Identities=10%  Similarity=0.063  Sum_probs=136.0

Q ss_pred             ccceEEEEEeecCCCCCcEEEEeeCCCcEEEEcCCC-Ccceeec-cccccceEEEEeCCCCCE--EEEee-CCCeEEEEE
Q 021247           14 EESVWAVTWVPATETRPALLLTGSLDETVKLWRPDD-MQLERTN-TGHCLGVVSVAAHPSGII--AASAS-LDSFVRVFD   88 (315)
Q Consensus        14 ~~~v~~v~~~~~~~~~~~~l~sgs~d~~v~~w~~~~-~~~~~~~-~~h~~~v~~~~~~~~g~~--l~s~~-~d~~i~~w~   88 (315)
                      ...+.-|+++|+.+    +|++++. +.+..|..+. ..+.... .........+.++++++.  ++++. ..+++..+.
T Consensus        39 ~~~~s~la~s~d~~----~ly~~~~-~~~~~~~i~~~~~~~~~~~~~~~~~p~~v~~~~~~~~~~v~~a~~~~~~v~~~~  113 (365)
T d1jofa_          39 DEPISWMTFDHERK----NIYGAAM-KKWSSFAVKSPTEIVHEASHPIGGHPRANDADTNTRAIFLLAAKQPPYAVYANP  113 (365)
T ss_dssp             TCCCSEEEECTTSS----EEEEEEB-TEEEEEEEEETTEEEEEEEEECCSSGGGGCTTSCCEEEEEEECSSTTCCEEEEE
T ss_pred             CCCCCEEEEcCCCC----EEEEEeC-CcEEEEEEeCCCCeEEEeeecCCCCcEEEEECCCCCEEEEEEecCCCCEEEEeE
Confidence            34455688887664    5666654 4566665442 2221111 111123445667788763  33322 234454443


Q ss_pred             CCCC------------cee----EEe-eCCcccEEEEEECCCCCeEEEEecCCCeEEEEecCCcceee---eecCCCCCC
Q 021247           89 VDTN------------ASI----ATL-EASPSEVWQMQFDPKGTTLAVAGGGSASVKLWDTATWNLIA---TLSIPRPEG  148 (315)
Q Consensus        89 ~~~~------------~~~----~~~-~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~---~~~~~~~~~  148 (315)
                      +...            ...    ... ......+..+.|+|+|++++++......|.+|+......+.   .....    
T Consensus       114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~h~h~v~~sPdG~~l~v~d~g~d~v~~~~~~~~g~~~~~~~~~~~----  189 (365)
T d1jofa_         114 FYKFAGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPTETYLYSADLTANKLWTHRKLASGEVELVGSVDAP----  189 (365)
T ss_dssp             ESSSCCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCEEEEEEEECS----
T ss_pred             ccCCCCcceeEeeeecceecCcccCcccCCCCcceEEEECCCCCEEEEeeCCCCEEEEEEccCCCceeeccceeec----
Confidence            3221            111    111 11223477999999999998887777889998765322111   11111    


Q ss_pred             CCCCccCCCCcceEEEEECCCCCEEE-EecCCCcEEEEEcccceee--e---eec--------------CCccceEEEEE
Q 021247          149 LKPTDKSSSKKFVLSVAWSPDGRRIA-CGSMDGTISVFDVTRAKFL--H---HLE--------------GHFMPVRSLVY  208 (315)
Q Consensus       149 ~~~~~~~~~~~~i~~~~~~~~~~~l~-~~s~dg~i~i~d~~~~~~~--~---~~~--------------~~~~~v~~~~~  208 (315)
                             ......+.++|+|+++++. +.-.++.|.+|++..+...  .   ...              .+......+.+
T Consensus       190 -------~~g~gPr~i~f~pdg~~~yv~~e~~~~V~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~  262 (365)
T d1jofa_         190 -------DPGDHPRWVAMHPTGNYLYALMEAGNRICEYVIDPATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCAL  262 (365)
T ss_dssp             -------STTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEE
T ss_pred             -------CCCCceEEEEECCCCceEEEeccCCCEEEEEEecCCCceEEEEeeeeccccccccccccccccccCCccceEE
Confidence                   0112367899999999875 5557889999998654321  1   110              11223467889


Q ss_pred             cCCCCcEEEEEe-CC-----CeEEEEeCCCC-eeEEE-----eecccccEEEEEEcC-CCCeEEEE-eCCCcEEEEecCc
Q 021247          209 SPVDPRVLFSAS-DD-----THVHMYDAEGK-SLVTA-----MSGHASWVLSVDASP-DGAAITTG-SSDRTVKLWDLNM  274 (315)
Q Consensus       209 ~~~~~~~l~s~~-~d-----~~i~~wd~~~~-~~~~~-----~~~~~~~i~~~~~~~-~~~~l~s~-~~d~~i~iwd~~~  274 (315)
                      +|+ +++|+++. .+     ..|..|+.... .+...     .........+++++| +|++|+++ ..++.|.+|+++.
T Consensus       263 spd-G~~lyvsnr~~~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~G~~p~~i~~~p~~G~~l~va~~~s~~v~v~~~~~  341 (365)
T d1jofa_         263 TFS-GKYMFASSRANKFELQGYIAGFKLRDCGSIEKQLFLSPTPTSGGHSNAVSPCPWSDEWMAITDDQEGWLEIYRWKD  341 (365)
T ss_dssp             CTT-SSEEEEEEEESSTTSCCEEEEEEECTTSCEEEEEEEEECSSCCTTCCCEEECTTCTTEEEEECSSSCEEEEEEEET
T ss_pred             CCC-CCEEEEEcccCCCccceEEEEEEecCCCceeeEeEeeEEEcCCCCccEEEecCCCCCEEEEEeCCCCeEEEEEEeC
Confidence            995 55555442 22     23777775432 22111     112334567899998 78877555 5678999998764


Q ss_pred             c
Q 021247          275 R  275 (315)
Q Consensus       275 ~  275 (315)
                      .
T Consensus       342 ~  342 (365)
T d1jofa_         342 E  342 (365)
T ss_dssp             T
T ss_pred             C
Confidence            3

>d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Lactonase Drp35
species: Staphylococcus aureus [TaxId: 1280]

Probab=98.99  E-value=2.9e-06  Score=68.08  Aligned_cols=225  Identities=11%  Similarity=0.088  Sum_probs=138.1

Q ss_pred             eEEEEEeecCCCCCcEEEEeeCCCcEEEEcCCCCcceeeccccccceEEEEeCCCCCEEEEeeCC----CeEEEEECCCC
Q 021247           17 VWAVTWVPATETRPALLLTGSLDETVKLWRPDDMQLERTNTGHCLGVVSVAAHPSGIIAASASLD----SFVRVFDVDTN   92 (315)
Q Consensus        17 v~~v~~~~~~~~~~~~l~sgs~d~~v~~w~~~~~~~~~~~~~h~~~v~~~~~~~~g~~l~s~~~d----~~i~~w~~~~~   92 (315)
                      .-+++|.+.++    +.++-..++.|..|+++..+..............++++++|.++++...+    +.+...+....
T Consensus        42 lEG~~~D~~G~----Ly~~D~~~g~I~ri~p~g~~~~~~~~~~~~~p~gla~~~dG~l~va~~~~~~~~~~i~~~~~~~~  117 (319)
T d2dg1a1          42 LEGLNFDRQGQ----LFLLDVFEGNIFKINPETKEIKRPFVSHKANPAAIKIHKDGRLFVCYLGDFKSTGGIFAATENGD  117 (319)
T ss_dssp             EEEEEECTTSC----EEEEETTTCEEEEECTTTCCEEEEEECSSSSEEEEEECTTSCEEEEECTTSSSCCEEEEECTTSC
T ss_pred             cEeCEECCCCC----EEEEECCCCEEEEEECCCCeEEEEEeCCCCCeeEEEECCCCCEEEEecCCCccceeEEEEcCCCc
Confidence            35778876553    56666788999999988776555544445567899999999988875432    33444454444


Q ss_pred             ceeEEeeC--CcccEEEEEECCCCCeEEEEecC------CCeEEEEecCCcceeeeecCCCCCCCCCCccCCCCcceEEE
Q 021247           93 ASIATLEA--SPSEVWQMQFDPKGTTLAVAGGG------SASVKLWDTATWNLIATLSIPRPEGLKPTDKSSSKKFVLSV  164 (315)
Q Consensus        93 ~~~~~~~~--~~~~v~~~~~~~~~~~~~~~~~~------d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~  164 (315)
                      ........  .......+.+.++|+. .++...      .+.+..++..... +..+.             ..-...+.+
T Consensus       118 ~~~~~~~~~~~~~~~nd~~~d~~G~l-~vtd~~~~~~~~~g~v~~~~~dg~~-~~~~~-------------~~~~~pnGi  182 (319)
T d2dg1a1         118 NLQDIIEDLSTAYCIDDMVFDSKGGF-YFTDFRGYSTNPLGGVYYVSPDFRT-VTPII-------------QNISVANGI  182 (319)
T ss_dssp             SCEEEECSSSSCCCEEEEEECTTSCE-EEEECCCBTTBCCEEEEEECTTSCC-EEEEE-------------EEESSEEEE
T ss_pred             eeeeeccCCCcccCCcceeEEeccce-eecccccccccCcceeEEEecccce-eEEEe-------------eccceeeee
Confidence            43333322  1234678899999874 344221      1224444433211 11110             001124689


Q ss_pred             EECCCCCEE-EEecCCCcEEEEEcccc-ee---ee----eecCCccceEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCee
Q 021247          165 AWSPDGRRI-ACGSMDGTISVFDVTRA-KF---LH----HLEGHFMPVRSLVYSPVDPRVLFSASDDTHVHMYDAEGKSL  235 (315)
Q Consensus       165 ~~~~~~~~l-~~~s~dg~i~i~d~~~~-~~---~~----~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~  235 (315)
                      +|+|+++.| ++-+..+.|..||+... ..   ..    ...........+++.+ ++++.++....+.|.+||.+ +++
T Consensus       183 a~s~dg~~lyvad~~~~~I~~~d~~~~g~~~~~~~~~~~~~~~~~~~PdGl~vD~-~G~l~Va~~~~g~V~~~~p~-G~~  260 (319)
T d2dg1a1         183 ALSTDEKVLWVTETTANRLHRIALEDDGVTIQPFGATIPYYFTGHEGPDSCCIDS-DDNLYVAMYGQGRVLVFNKR-GYP  260 (319)
T ss_dssp             EECTTSSEEEEEEGGGTEEEEEEECTTSSSEEEEEEEEEEECCSSSEEEEEEEBT-TCCEEEEEETTTEEEEECTT-SCE
T ss_pred             eeccccceEEEecccCCceEEEEEcCCCceeccccceeeeccCCccceeeeeEcC-CCCEEEEEcCCCEEEEECCC-CcE
Confidence            999999866 55677889999997532 11   11    1111122356788887 67788888899999999975 555


Q ss_pred             EEEee------cccccEEEEEEcCCCCeEEEEe
Q 021247          236 VTAMS------GHASWVLSVDASPDGAAITTGS  262 (315)
Q Consensus       236 ~~~~~------~~~~~i~~~~~~~~~~~l~s~~  262 (315)
                      +..+.      ++...+.++++.|....+++..
T Consensus       261 l~~i~~P~~~~~~~~~~~~~~~~~~~~~~~~t~  293 (319)
T d2dg1a1         261 IGQILIPGRDEGHMLRSTHPQFIPGTNQLIICS  293 (319)
T ss_dssp             EEEEECTTGGGTCSCBCCEEEECTTSCEEEEEE
T ss_pred             EEEEeCCCcCCCcCceeeeEEEeCCCCEEEEEc
Confidence            55543      2344678899998776665544

>d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Regucalcin
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=98.85  E-value=9.6e-06  Score=64.15  Aligned_cols=220  Identities=14%  Similarity=0.097  Sum_probs=144.0

Q ss_pred             EeCC-CCCEEEEeeCCCeEEEEECCCCceeEEeeCCcccEEEEEECCCCCeEEEEecCCCeEEEEecCCcceeeeecCCC
Q 021247           67 AAHP-SGIIAASASLDSFVRVFDVDTNASIATLEASPSEVWQMQFDPKGTTLAVAGGGSASVKLWDTATWNLIATLSIPR  145 (315)
Q Consensus        67 ~~~~-~g~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~  145 (315)
                      .|++ ++.+..+--..+.|+-||..+++.. .+. .+..+.++.+.+++..+ +++ . ..+.++|..+++.........
T Consensus        24 ~wd~~~~~l~wvDi~~~~I~r~d~~~g~~~-~~~-~~~~~~~i~~~~dg~l~-va~-~-~gl~~~d~~tg~~~~l~~~~~   98 (295)
T d2ghsa1          24 TFDPASGTAWWFNILERELHELHLASGRKT-VHA-LPFMGSALAKISDSKQL-IAS-D-DGLFLRDTATGVLTLHAELES   98 (295)
T ss_dssp             EEETTTTEEEEEEGGGTEEEEEETTTTEEE-EEE-CSSCEEEEEEEETTEEE-EEE-T-TEEEEEETTTCCEEEEECSST
T ss_pred             eEECCCCEEEEEECCCCEEEEEECCCCeEE-EEE-CCCCcEEEEEecCCCEE-EEE-e-CccEEeecccceeeEEeeeec
Confidence            3554 4555555556788999998887543 332 34567788888887644 433 3 468899998876543332211


Q ss_pred             CCCCCCCccCCCCcceEEEEECCCCCEEEEecC----CCcEEEEEcccceeeeeecCCccceEEEEEcCCCCcEEEEEeC
Q 021247          146 PEGLKPTDKSSSKKFVLSVAWSPDGRRIACGSM----DGTISVFDVTRAKFLHHLEGHFMPVRSLVYSPVDPRVLFSASD  221 (315)
Q Consensus       146 ~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~s~----dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~  221 (315)
                      .         .....++.+.+.|+|++.++...    .+.-.+|.+..++....... ....+.+.|++.+..++++-+.
T Consensus        99 ~---------~~~~~~nd~~vd~~G~iw~~~~~~~~~~~~g~l~~~~~g~~~~~~~~-~~~~Ng~~~s~d~~~l~~~dt~  168 (295)
T d2ghsa1          99 D---------LPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVAKGKVTKLFAD-ISIPNSICFSPDGTTGYFVDTK  168 (295)
T ss_dssp             T---------CTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEETTEEEEEEEE-ESSEEEEEECTTSCEEEEEETT
T ss_pred             C---------CCcccceeeEECCCCCEEEEeccccccccceeEeeecCCcEEEEeec-cCCcceeeecCCCceEEEeecc
Confidence            1         11234788999999986665432    23445666666654433322 3345788999977667788888


Q ss_pred             CCeEEEEeCCCC--------eeEEEeecccccEEEEEEcCCCCeEEEEeCCCcEEEEecCccceehcccccccceEEEEE
Q 021247          222 DTHVHMYDAEGK--------SLVTAMSGHASWVLSVDASPDGAAITTGSSDRTVKLWDLNMRAAMQSMTNHTDQVWGVSF  293 (315)
Q Consensus       222 d~~i~~wd~~~~--------~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~  293 (315)
                      .+.|..|+....        .......+..+....++++.+|.+.++.-..+.|..||- .++.+..+.-....+++++|
T Consensus       169 ~~~I~~~~~d~~~~~~~~~~~~~~~~~~~~g~pdG~~vD~~GnlWva~~~~g~V~~~dp-~G~~~~~i~lP~~~~T~~~F  247 (295)
T d2ghsa1         169 VNRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGHIWNARWGEGAVDRYDT-DGNHIARYEVPGKQTTCPAF  247 (295)
T ss_dssp             TCEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSCEEEEEETTTEEEEECT-TCCEEEEEECSCSBEEEEEE
T ss_pred             cceeeEeeecccccccccceEEEeccCcccccccceEEcCCCCEEeeeeCCCceEEecC-CCcEeeEecCCCCceEEEEE
Confidence            899999986421        111222334556788999999987777767888999995 57777777666678999999


Q ss_pred             e-eCCCEEEE
Q 021247          294 R-PLGGRVVS  302 (315)
Q Consensus       294 s-~~~~~l~s  302 (315)
                      - |+.+.|+.
T Consensus       248 GG~d~~~Lyv  257 (295)
T d2ghsa1         248 IGPDASRLLV  257 (295)
T ss_dssp             ESTTSCEEEE
T ss_pred             eCCCCCEEEE
Confidence            6 67666653

>d1xfda1 b.70.3.1 (A:127-591) Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.75  E-value=7.8e-06  Score=69.08  Aligned_cols=286  Identities=13%  Similarity=0.098  Sum_probs=150.9

Q ss_pred             ceEEEEEeecCCCCCcEEEEe--------eCCCcEEEEcCCCCcceeecc--ccccceEEEEeCCCCCEEEEeeCCCeEE
Q 021247           16 SVWAVTWVPATETRPALLLTG--------SLDETVKLWRPDDMQLERTNT--GHCLGVVSVAAHPSGIIAASASLDSFVR   85 (315)
Q Consensus        16 ~v~~v~~~~~~~~~~~~l~sg--------s~d~~v~~w~~~~~~~~~~~~--~h~~~v~~~~~~~~g~~l~s~~~d~~i~   85 (315)
                      .+....|+|+++.   +++..        +..+.+.++|..+........  .....+....|+|+|+.+|=.. ++.|.
T Consensus        62 ~~~~~~~SpD~~~---vl~~~~~~~~~r~s~~~~~~i~d~~~~~~~~l~~~~~~~~~l~~~~wSPDG~~iafv~-~~nl~  137 (465)
T d1xfda1          62 RAIRYEISPDREY---ALFSYNVEPIYQHSYTGYYVLSKIPHGDPQSLDPPEVSNAKLQYAGWGPKGQQLIFIF-ENNIY  137 (465)
T ss_dssp             TCSEEEECTTSSE---EEEEESCCCCSSSCCCSEEEEEESSSCCCEECCCTTCCSCCCSBCCBCSSTTCEEEEE-TTEEE
T ss_pred             ccceeEECCCCCe---EEEEEcccceeEeeccccEEEEEccCCceeeccCccCCccccceeeeccCCceEEEEe-cceEE
Confidence            5666778887652   33332        345678888887766543322  2233455678999999887665 66788


Q ss_pred             EEECCCCceeEEeeCC-cccE-----------------EEEEECCCCCeEEEEecCCCeEEEEecCC-----cceeeeec
Q 021247           86 VFDVDTNASIATLEAS-PSEV-----------------WQMQFDPKGTTLAVAGGGSASVKLWDTAT-----WNLIATLS  142 (315)
Q Consensus        86 ~w~~~~~~~~~~~~~~-~~~v-----------------~~~~~~~~~~~~~~~~~~d~~i~~~d~~~-----~~~~~~~~  142 (315)
                      +.+...+..++..... ...+                 ..+-|+|+|+.+++.--++..+..+.+..     ......+.
T Consensus       138 ~~~~~~~~~~~lt~~g~~~~i~nG~~d~vyeee~~~~~~a~~WSPDgk~iaf~~~D~s~V~~~~~~~~~~~~~p~~~~~~  217 (465)
T d1xfda1         138 YCAHVGKQAIRVVSTGKEGVIYNGLSDWLYEEEILKTHIAHWWSPDGTRLAYAAINDSRVPIMELPTYTGSIYPTVKPYH  217 (465)
T ss_dssp             EESSSSSCCEEEECCCBTTTEEEEECCHHHHHTTSSSSEEEEECTTSSEEEEEEEECTTSCEEEECCCSSSSSCCCEEEE
T ss_pred             EEecCCCceEEEecccCcceeeccccchhhhhhhccccceEEECCCCCeEEEEEecccccceeecccccccccceeeeee
Confidence            8888777655443222 1111                 46779999999988765555555554321     01111111


Q ss_pred             CCCCCCC---------------------CCCccCCCCcceEEEEECCCCCEEEEecC----CCcEEEEEcccceeeeeec
Q 021247          143 IPRPEGL---------------------KPTDKSSSKKFVLSVAWSPDGRRIACGSM----DGTISVFDVTRAKFLHHLE  197 (315)
Q Consensus       143 ~~~~~~~---------------------~~~~~~~~~~~i~~~~~~~~~~~l~~~s~----dg~i~i~d~~~~~~~~~~~  197 (315)
                      .+.....                     .+.........+..+.|+++++.++....    ...+.++|..+++......
T Consensus       218 Yp~~G~~np~~~l~v~d~~~~~~~~~~~~~~~~~~~~~y~~~~~W~~d~~~~~~~~nR~q~~~~i~~~d~~tg~~~~~~~  297 (465)
T d1xfda1         218 YPKAGSENPSISLHVIGLNGPTHDLEMMPPDDPRMREYYITMVKWATSTKVAVTWLNRAQNVSILTLCDATTGVCTKKHE  297 (465)
T ss_dssp             CCBTTSCCCEEEEEEEESSSSCCCEECCCCCCGGGSSEEEEEEEESSSSEEEEEEEETTSCEEEEEEEETTTCCEEEEEE
T ss_pred             ccccCCCCCceeEEEEecCCCcEEEEEeccCcCccccceeeeeEEcCCCeEEEEEEccccccceEEEEcCCCCcEEEEEE
Confidence            1111100                     00001112335778999999886665432    2358889998887654432


Q ss_pred             CCc-c----ceEEEEEcCCCCcEEE-EEe-CCC--eEEEEeCC------CCeeEEEeecccccEEEE-EEcCCCCeE-EE
Q 021247          198 GHF-M----PVRSLVYSPVDPRVLF-SAS-DDT--HVHMYDAE------GKSLVTAMSGHASWVLSV-DASPDGAAI-TT  260 (315)
Q Consensus       198 ~~~-~----~v~~~~~~~~~~~~l~-s~~-~d~--~i~~wd~~------~~~~~~~~~~~~~~i~~~-~~~~~~~~l-~s  260 (315)
                      .+. .    .-....|+|++..+++ ..+ .++  .+..+.+.      .+..+..+....-.|..+ .++++++.| ++
T Consensus       298 e~~~~wv~~~~~~p~~~~dg~~~~fi~~se~~g~~~ly~~~~~~~~~~~~~~~~~~LT~G~w~V~~i~~~d~~~~~vyF~  377 (465)
T d1xfda1         298 DESEAWLHRQNEEPVFSKDGRKFFFIRAIPQGGRGKFYHITVSSSQPNSSNDNIQSITSGDWDVTKILAYDEKGNKIYFL  377 (465)
T ss_dssp             EECSSCCCCCCCCCEECTTSCSEEEEEEECCSSSSCEEEEEEECSSCCSSSCCCCBSCCSSSCEEEEEEEETTTTEEEEE
T ss_pred             EcCCceEeccCCceeEccCCCeeEEEEeeeecccCceEEEEeccccccCCCceeEEeccCCceEEEEEEEcCCCCEEEEE
Confidence            211 1    1123467775554432 222 222  33333211      122223333333335554 578876654 45


Q ss_pred             EeCCC--cEEEEe--cCccceehcc---cccccceEEEEEeeCCCEEEEEeC
Q 021247          261 GSSDR--TVKLWD--LNMRAAMQSM---TNHTDQVWGVSFRPLGGRVVSVSD  305 (315)
Q Consensus       261 ~~~d~--~i~iwd--~~~~~~~~~~---~~~~~~v~~~~~s~~~~~l~s~~~  305 (315)
                      +..++  .-.+|.  +........+   ..+.....++.|||++++++-...
T Consensus       378 a~~~~p~~~hly~v~l~g~~~~~~lt~~~~~~~~~~~~~~S~~~~y~v~~~s  429 (465)
T d1xfda1         378 STEDLPRRRQLYSANTVGNFNRQCLSCDLVENCTYFSASFSHSMDFFLLKCE  429 (465)
T ss_dssp             ESSSCTTCCEEEEECSSTTCCCBCSSTTSSSSCCCCEEEECTTSSEEEEECC
T ss_pred             EeCCCCCceEEEEEECCCCCcceeeccccCCCCCEEEEEECCCCCEEEEEee
Confidence            54432  223444  4332222211   223445678999999999874433

>d1xfda1 b.70.3.1 (A:127-591) Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.72  E-value=4.2e-06  Score=70.78  Aligned_cols=273  Identities=16%  Similarity=0.217  Sum_probs=147.1

Q ss_pred             EEEeecCCCCCcEEEEeeCCCcEEEEcCCCCcceeeccc---cccceEEEEeCCCCCEEEEe---------eCCCeEEEE
Q 021247           20 VTWVPATETRPALLLTGSLDETVKLWRPDDMQLERTNTG---HCLGVVSVAAHPSGIIAASA---------SLDSFVRVF   87 (315)
Q Consensus        20 v~~~~~~~~~~~~l~sgs~d~~v~~w~~~~~~~~~~~~~---h~~~v~~~~~~~~g~~l~s~---------~~d~~i~~w   87 (315)
                      ..|.+.+.    ++. -..||.|.+|+..+.+....+..   ....+....++|||++++..         +..+.+.++
T Consensus        22 ~~W~~~~~----~~~-~~~~g~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~SpD~~~vl~~~~~~~~~r~s~~~~~~i~   96 (465)
T d1xfda1          22 AKWISDTE----FIY-REQKGTVRLWNVETNTSTVLIEGKKIESLRAIRYEISPDREYALFSYNVEPIYQHSYTGYYVLS   96 (465)
T ss_dssp             CCBSSSSC----BCC-CCSSSCEEEBCGGGCCCEEEECTTTTTTTTCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEE
T ss_pred             CEEeCCCc----EEE-EeCCCcEEEEECCCCCEEEEEcCccccccccceeEECCCCCeEEEEEcccceeEeeccccEEEE
Confidence            46777653    333 35678899999876654333322   22356778899999987755         335678899


Q ss_pred             ECCCCceeEEe--eCCcccEEEEEECCCCCeEEEEecCCCeEEEEecCCcceeeeecCCCCCCCCCCcc------CCCCc
Q 021247           88 DVDTNASIATL--EASPSEVWQMQFDPKGTTLAVAGGGSASVKLWDTATWNLIATLSIPRPEGLKPTDK------SSSKK  159 (315)
Q Consensus        88 ~~~~~~~~~~~--~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~------~~~~~  159 (315)
                      |+.++......  ......+....|+|+|+.++++.  ++.|.+.+...+..+....-. .++......      .....
T Consensus        97 d~~~~~~~~l~~~~~~~~~l~~~~wSPDG~~iafv~--~~nl~~~~~~~~~~~~lt~~g-~~~~i~nG~~d~vyeee~~~  173 (465)
T d1xfda1          97 KIPHGDPQSLDPPEVSNAKLQYAGWGPKGQQLIFIF--ENNIYYCAHVGKQAIRVVSTG-KEGVIYNGLSDWLYEEEILK  173 (465)
T ss_dssp             ESSSCCCEECCCTTCCSCCCSBCCBCSSTTCEEEEE--TTEEEEESSSSSCCEEEECCC-BTTTEEEEECCHHHHHTTSS
T ss_pred             EccCCceeeccCccCCccccceeeeccCCceEEEEe--cceEEEEecCCCceEEEeccc-Ccceeeccccchhhhhhhcc
Confidence            99887654322  12233455678999999988764  567888888766554433211 110000000      00001


Q ss_pred             ceEEEEECCCCCEEEEecC-CCc---------------------------------EEEEEcccceeeeee------cCC
Q 021247          160 FVLSVAWSPDGRRIACGSM-DGT---------------------------------ISVFDVTRAKFLHHL------EGH  199 (315)
Q Consensus       160 ~i~~~~~~~~~~~l~~~s~-dg~---------------------------------i~i~d~~~~~~~~~~------~~~  199 (315)
                      .-..+-|||||++||.... +..                                 +.++|+..+......      ...
T Consensus       174 ~~~a~~WSPDgk~iaf~~~D~s~V~~~~~~~~~~~~~p~~~~~~Yp~~G~~np~~~l~v~d~~~~~~~~~~~~~~~~~~~  253 (465)
T d1xfda1         174 THIAHWWSPDGTRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISLHVIGLNGPTHDLEMMPPDDPRMR  253 (465)
T ss_dssp             SSEEEEECTTSSEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEEEEEESSSSCCCEECCCCCCGGGS
T ss_pred             ccceEEECCCCCeEEEEEecccccceeecccccccccceeeeeeccccCCCCCceeEEEEecCCCcEEEEEeccCcCccc
Confidence            1246789999999987542 222                                 333444322211110      011


Q ss_pred             ccceEEEEEcCCCCcEEEEEeC-C---CeEEEEeCCCCeeEEEeec-ccccE----EEEEEcCCCCeEE---EEeCCC--
Q 021247          200 FMPVRSLVYSPVDPRVLFSASD-D---THVHMYDAEGKSLVTAMSG-HASWV----LSVDASPDGAAIT---TGSSDR--  265 (315)
Q Consensus       200 ~~~v~~~~~~~~~~~~l~s~~~-d---~~i~~wd~~~~~~~~~~~~-~~~~i----~~~~~~~~~~~l~---s~~~d~--  265 (315)
                      ..-+..+.|.| ++++++.... +   ..+.++|..+++....... ...+|    ....|+|+|+.++   ..-.+|  
T Consensus       254 ~~y~~~~~W~~-d~~~~~~~~nR~q~~~~i~~~d~~tg~~~~~~~e~~~~wv~~~~~~p~~~~dg~~~~fi~~se~~g~~  332 (465)
T d1xfda1         254 EYYITMVKWAT-STKVAVTWLNRAQNVSILTLCDATTGVCTKKHEDESEAWLHRQNEEPVFSKDGRKFFFIRAIPQGGRG  332 (465)
T ss_dssp             SEEEEEEEESS-SSEEEEEEEETTSCEEEEEEEETTTCCEEEEEEEECSSCCCCCCCCCEECTTSCSEEEEEEECCSSSS
T ss_pred             cceeeeeEEcC-CCeEEEEEEccccccceEEEEcCCCCcEEEEEEEcCCceEeccCCceeEccCCCeeEEEEeeeecccC
Confidence            22356788987 4555554332 2   2578889888866544432 23333    2356888887432   222233  


Q ss_pred             cEEEEecC------ccceehcccccccceEEE-EEeeCCCEEE
Q 021247          266 TVKLWDLN------MRAAMQSMTNHTDQVWGV-SFRPLGGRVV  301 (315)
Q Consensus       266 ~i~iwd~~------~~~~~~~~~~~~~~v~~~-~~s~~~~~l~  301 (315)
                      .+....+.      .++....++...-.|..+ +|.++++.|.
T Consensus       333 ~ly~~~~~~~~~~~~~~~~~~LT~G~w~V~~i~~~d~~~~~vy  375 (465)
T d1xfda1         333 KFYHITVSSSQPNSSNDNIQSITSGDWDVTKILAYDEKGNKIY  375 (465)
T ss_dssp             CEEEEEEECSSCCSSSCCCCBSCCSSSCEEEEEEEETTTTEEE
T ss_pred             ceEEEEeccccccCCCceeEEeccCCceEEEEEEEcCCCCEEE
Confidence            23333221      122233333223345554 6788777764

>d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Tricorn protease N-terminal domain
family: Tricorn protease N-terminal domain
domain: Tricorn protease N-terminal domain
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=98.69  E-value=6.1e-06  Score=64.35  Aligned_cols=229  Identities=14%  Similarity=0.129  Sum_probs=117.3

Q ss_pred             eCCC--CCEEEEeeCCCeEEEEECCCCceeEEeeCCcccEEEEEECCCCCeEEEEecCC-----CeEEEEecCCcceeee
Q 021247           68 AHPS--GIIAASASLDSFVRVFDVDTNASIATLEASPSEVWQMQFDPKGTTLAVAGGGS-----ASVKLWDTATWNLIAT  140 (315)
Q Consensus        68 ~~~~--g~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d-----~~i~~~d~~~~~~~~~  140 (315)
                      .+|+  |+.++-.+ ++.|.+.|+.+++.. .+..+.......+|+|+|+.++++...+     ..|.+++..+++....
T Consensus         6 ~sPdi~G~~v~f~~-~~dl~~~d~~~g~~~-~Lt~~~~~~~~p~~SPDG~~iaf~~~~~~~~~~~~i~~~~~~~g~~~~l   83 (281)
T d1k32a2           6 LNPDIHGDRIIFVC-CDDLWEHDLKSGSTR-KIVSNLGVINNARFFPDGRKIAIRVMRGSSLNTADLYFYNGENGEIKRI   83 (281)
T ss_dssp             EEEEEETTEEEEEE-TTEEEEEETTTCCEE-EEECSSSEEEEEEECTTSSEEEEEEEESTTCCEEEEEEEETTTTEEEEC
T ss_pred             cCCCCCCCEEEEEe-CCcEEEEECCCCCEE-EEecCCCcccCEEECCCCCEEEEEEeeCCCCCceEEEEEEecCCceEEe
Confidence            4577  88777554 456888899887754 4555667788899999999988765332     2477777766654432


Q ss_pred             ecCCCCCCCCCCccCCCCcceEEEEECCCCCEEEEecCC------CcEEEEEcccceeeeeecCCccceEEEEEcCCCCc
Q 021247          141 LSIPRPEGLKPTDKSSSKKFVLSVAWSPDGRRIACGSMD------GTISVFDVTRAKFLHHLEGHFMPVRSLVYSPVDPR  214 (315)
Q Consensus       141 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~s~d------g~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~  214 (315)
                      ...+..       ............|+|+|+.|+.....      ..+...+...........+   .... .+.+.+..
T Consensus        84 t~~~~~-------~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~-~~~~~~~~  152 (281)
T d1k32a2          84 TYFSGK-------STGRRMFTDVAGFDPDGNLIISTDAMQPFSSMTCLYRVENDGINFVPLNLG---PATH-ILFADGRR  152 (281)
T ss_dssp             CCCCEE-------EETTEECSEEEEECTTCCEEEEECTTSSSTTCCEEEEEEGGGTEEEECCSC---SCSE-EEEETTEE
T ss_pred             eecCCC-------ccCccccccccccCCCCCEEEEEEccCCCccceeeeeecCCCceeEEecCC---ccce-eeecCCCe
Confidence            111100       01111234678999999988765322      2345555554443322211   1111 22333333


Q ss_pred             EEEEEeCCC-----------eEEEEeCCCCeeEEEeecccccEEEEEEcCCCCeEEEEeCCC--cEEEEecCccceehcc
Q 021247          215 VLFSASDDT-----------HVHMYDAEGKSLVTAMSGHASWVLSVDASPDGAAITTGSSDR--TVKLWDLNMRAAMQSM  281 (315)
Q Consensus       215 ~l~s~~~d~-----------~i~~wd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~d~--~i~iwd~~~~~~~~~~  281 (315)
                      .+.....+.           .............. ............++++. .+.....++  .|.++|++.++.. .+
T Consensus       153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~d~~g~~~~-~l  229 (281)
T d1k32a2         153 VIGRNTFELPHWKGYRGGTRGKIWIEVNSGAFKK-IVDMSTHVSSPVIVGHR-IYFITDIDGFGQIYSTDLDGKDLR-KH  229 (281)
T ss_dssp             EEEESCSCCTTSTTCCSTTCCEEEEEEETTEEEE-EECCSSCCEEEEEETTE-EEEEECTTSSCEEEEEETTSCSCE-EC
T ss_pred             EEEeeccccceeeeeccCCcceeeeeccccceee-ccCCccccceeeeeccc-cceecccccccceEEEeCCCCceE-Ee
Confidence            333332211           01111111111111 11222223334455442 333333333  4666777765433 23


Q ss_pred             cccccceEEEEEeeCCCEEEEEeCCCcEEEeec
Q 021247          282 TNHTDQVWGVSFRPLGGRVVSVSDDKSISLYEY  314 (315)
Q Consensus       282 ~~~~~~v~~~~~s~~~~~l~s~~~d~~i~i~~~  314 (315)
                      ..+.+ .....|||||+.|+. ..++.|.++|+
T Consensus       230 t~~~~-~~~~~~SpDG~~I~f-~~~~~l~~~d~  260 (281)
T d1k32a2         230 TSFTD-YYPRHLNTDGRRILF-SKGGSIYIFNP  260 (281)
T ss_dssp             CCCCS-SCEEEEEESSSCEEE-EETTEEEEECT
T ss_pred             ecCCC-cccccCcCCCCEEEE-EeCCEEEEEEC
Confidence            33222 223468999999875 34677887775

>d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Regucalcin
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=98.41  E-value=0.00021  Score=56.13  Aligned_cols=222  Identities=12%  Similarity=0.066  Sum_probs=135.8

Q ss_pred             EEEEeecCCCCCcEEEEeeCCCcEEEEcCCCCcceeeccccccceEEEEeCCCCCEEEEeeCCCeEEEEECCCCceeEEe
Q 021247           19 AVTWVPATETRPALLLTGSLDETVKLWRPDDMQLERTNTGHCLGVVSVAAHPSGIIAASASLDSFVRVFDVDTNASIATL   98 (315)
Q Consensus        19 ~v~~~~~~~~~~~~l~sgs~d~~v~~w~~~~~~~~~~~~~h~~~v~~~~~~~~g~~l~s~~~d~~i~~w~~~~~~~~~~~   98 (315)
                      +..|.+...   .+..+--..+.|..|++++.+.....  ....+.++.+.++|.++++. .+ .+.++|..+++.....
T Consensus        22 gp~wd~~~~---~l~wvDi~~~~I~r~d~~~g~~~~~~--~~~~~~~i~~~~dg~l~va~-~~-gl~~~d~~tg~~~~l~   94 (295)
T d2ghsa1          22 GPTFDPASG---TAWWFNILERELHELHLASGRKTVHA--LPFMGSALAKISDSKQLIAS-DD-GLFLRDTATGVLTLHA   94 (295)
T ss_dssp             EEEEETTTT---EEEEEEGGGTEEEEEETTTTEEEEEE--CSSCEEEEEEEETTEEEEEE-TT-EEEEEETTTCCEEEEE
T ss_pred             CCeEECCCC---EEEEEECCCCEEEEEECCCCeEEEEE--CCCCcEEEEEecCCCEEEEE-eC-ccEEeecccceeeEEe
Confidence            345665443   24555456788888998876543221  12356788888898877754 44 5889999888654333


Q ss_pred             eCC----cccEEEEEECCCCCeEEEEecC---CCeEEEEecCCcceeeeecCCCCCCCCCCccCCCCcceEEEEECCCCC
Q 021247           99 EAS----PSEVWQMQFDPKGTTLAVAGGG---SASVKLWDTATWNLIATLSIPRPEGLKPTDKSSSKKFVLSVAWSPDGR  171 (315)
Q Consensus        99 ~~~----~~~v~~~~~~~~~~~~~~~~~~---d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~  171 (315)
                      ...    ...+..+.+.|+|+..+.+...   .+.-.+|.+..++......              .-...+.++|+++++
T Consensus        95 ~~~~~~~~~~~nd~~vd~~G~iw~~~~~~~~~~~~g~l~~~~~g~~~~~~~--------------~~~~~Ng~~~s~d~~  160 (295)
T d2ghsa1          95 ELESDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVAKGKVTKLFA--------------DISIPNSICFSPDGT  160 (295)
T ss_dssp             CSSTTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEETTEEEEEEE--------------EESSEEEEEECTTSC
T ss_pred             eeecCCCcccceeeEECCCCCEEEEeccccccccceeEeeecCCcEEEEee--------------ccCCcceeeecCCCc
Confidence            221    2357888999999855433221   1234555554443322211              011246899999988


Q ss_pred             EE-EEecCCCcEEEEEcccc--e------eeeeecCCccceEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCeeEEEeecc
Q 021247          172 RI-ACGSMDGTISVFDVTRA--K------FLHHLEGHFMPVRSLVYSPVDPRVLFSASDDTHVHMYDAEGKSLVTAMSGH  242 (315)
Q Consensus       172 ~l-~~~s~dg~i~i~d~~~~--~------~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~  242 (315)
                      .+ ++-+..+.|..|++...  .      ......+.......+++.. ++++.++.-..+.|..||.. ++++..+.--
T Consensus       161 ~l~~~dt~~~~I~~~~~d~~~~~~~~~~~~~~~~~~~~g~pdG~~vD~-~GnlWva~~~~g~V~~~dp~-G~~~~~i~lP  238 (295)
T d2ghsa1         161 TGYFVDTKVNRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDA-EGHIWNARWGEGAVDRYDTD-GNHIARYEVP  238 (295)
T ss_dssp             EEEEEETTTCEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECT-TSCEEEEEETTTEEEEECTT-CCEEEEEECS
T ss_pred             eEEEeecccceeeEeeecccccccccceEEEeccCcccccccceEEcC-CCCEEeeeeCCCceEEecCC-CcEeeEecCC
Confidence            65 56677888999986321  1      1122233344567888876 66778777788899999975 4556665544


Q ss_pred             cccEEEEEEc-CCCCeE-EEEeC
Q 021247          243 ASWVLSVDAS-PDGAAI-TTGSS  263 (315)
Q Consensus       243 ~~~i~~~~~~-~~~~~l-~s~~~  263 (315)
                      ...+++++|- |+.+.| +|...
T Consensus       239 ~~~~T~~~FGG~d~~~LyvTta~  261 (295)
T d2ghsa1         239 GKQTTCPAFIGPDASRLLVTSAR  261 (295)
T ss_dssp             CSBEEEEEEESTTSCEEEEEEBC
T ss_pred             CCceEEEEEeCCCCCEEEEEECC
Confidence            4568999996 455544 44443

>d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Tricorn protease N-terminal domain
family: Tricorn protease N-terminal domain
domain: Tricorn protease N-terminal domain
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=98.36  E-value=0.00023  Score=54.94  Aligned_cols=229  Identities=12%  Similarity=0.069  Sum_probs=116.3

Q ss_pred             Eeec--CCCCCcEEEEeeCCCcEEEEcCCCCcceeeccccccceEEEEeCCCCCEEEEeeC-C-----CeEEEEECCCCc
Q 021247           22 WVPA--TETRPALLLTGSLDETVKLWRPDDMQLERTNTGHCLGVVSVAAHPSGIIAASASL-D-----SFVRVFDVDTNA   93 (315)
Q Consensus        22 ~~~~--~~~~~~~l~sgs~d~~v~~w~~~~~~~~~~~~~h~~~v~~~~~~~~g~~l~s~~~-d-----~~i~~w~~~~~~   93 (315)
                      .+|+  ++.   ++++  .++.|.+.+.+..+.. .+..+........|+|||+.|+-... +     ..|.+.+..++.
T Consensus         6 ~sPdi~G~~---v~f~--~~~dl~~~d~~~g~~~-~Lt~~~~~~~~p~~SPDG~~iaf~~~~~~~~~~~~i~~~~~~~g~   79 (281)
T d1k32a2           6 LNPDIHGDR---IIFV--CCDDLWEHDLKSGSTR-KIVSNLGVINNARFFPDGRKIAIRVMRGSSLNTADLYFYNGENGE   79 (281)
T ss_dssp             EEEEEETTE---EEEE--ETTEEEEEETTTCCEE-EEECSSSEEEEEEECTTSSEEEEEEEESTTCCEEEEEEEETTTTE
T ss_pred             cCCCCCCCE---EEEE--eCCcEEEEECCCCCEE-EEecCCCcccCEEECCCCCEEEEEEeeCCCCCceEEEEEEecCCc
Confidence            4576  542   3444  3456777788776654 44445567788999999998874422 2     237777777776


Q ss_pred             eeEEeeC------CcccEEEEEECCCCCeEEEEecCC-----CeEEEEecCCcceeeeecCCCCCCCCCCccCCCCcceE
Q 021247           94 SIATLEA------SPSEVWQMQFDPKGTTLAVAGGGS-----ASVKLWDTATWNLIATLSIPRPEGLKPTDKSSSKKFVL  162 (315)
Q Consensus        94 ~~~~~~~------~~~~v~~~~~~~~~~~~~~~~~~d-----~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~  162 (315)
                      .......      .........|+|+++.++++....     ..+...+....+......                ....
T Consensus        80 ~~~lt~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------~~~~  143 (281)
T d1k32a2          80 IKRITYFSGKSTGRRMFTDVAGFDPDGNLIISTDAMQPFSSMTCLYRVENDGINFVPLNL----------------GPAT  143 (281)
T ss_dssp             EEECCCCCEEEETTEECSEEEEECTTCCEEEEECTTSSSTTCCEEEEEEGGGTEEEECCS----------------CSCS
T ss_pred             eEEeeecCCCccCccccccccccCCCCCEEEEEEccCCCccceeeeeecCCCceeEEecC----------------Cccc
Confidence            5432111      112346778999999887654322     224444444332211100                0011


Q ss_pred             EEEECCCCCEEEEecCCC-----------cEEEEEcccceeeeeecCCccceEEEEEcCCCCcEEEEEeC--CCeEEEEe
Q 021247          163 SVAWSPDGRRIACGSMDG-----------TISVFDVTRAKFLHHLEGHFMPVRSLVYSPVDPRVLFSASD--DTHVHMYD  229 (315)
Q Consensus       163 ~~~~~~~~~~l~~~s~dg-----------~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~--d~~i~~wd  229 (315)
                      ...+.+.+..++....+.           ................. .........+.+  ..++.....  ...|.++|
T Consensus       144 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~--~~~~~~~~~~~~~~l~~~d  220 (281)
T d1k32a2         144 HILFADGRRVIGRNTFELPHWKGYRGGTRGKIWIEVNSGAFKKIVD-MSTHVSSPVIVG--HRIYFITDIDGFGQIYSTD  220 (281)
T ss_dssp             EEEEETTEEEEEESCSCCTTSTTCCSTTCCEEEEEEETTEEEEEEC-CSSCCEEEEEET--TEEEEEECTTSSCEEEEEE
T ss_pred             eeeecCCCeEEEeeccccceeeeeccCCcceeeeeccccceeeccC-Cccccceeeeec--cccceecccccccceEEEe
Confidence            222222222333222111           11222222222222222 222233344443  233333333  34688888


Q ss_pred             CCCCeeEEEeecccccEEEEEEcCCCCeEEEEeCCCcEEEEecCcccee
Q 021247          230 AEGKSLVTAMSGHASWVLSVDASPDGAAITTGSSDRTVKLWDLNMRAAM  278 (315)
Q Consensus       230 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~  278 (315)
                      +.++............+  ..|+|+|+.|+- ..++.|+++|+.+++..
T Consensus       221 ~~g~~~~~lt~~~~~~~--~~~SpDG~~I~f-~~~~~l~~~d~~~g~~~  266 (281)
T d1k32a2         221 LDGKDLRKHTSFTDYYP--RHLNTDGRRILF-SKGGSIYIFNPDTEKIE  266 (281)
T ss_dssp             TTSCSCEECCCCCSSCE--EEEEESSSCEEE-EETTEEEEECTTTCCEE
T ss_pred             CCCCceEEeecCCCccc--ccCcCCCCEEEE-EeCCEEEEEECCCCCEE
Confidence            88765543222222233  358999988765 44688999999877644

>d1fwxa2 b.69.3.1 (A:8-451) Nitrous oxide reductase, N-terminal domain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Paracoccus denitrificans [TaxId: 266]

Probab=98.26  E-value=5.5e-05  Score=61.43  Aligned_cols=189  Identities=15%  Similarity=0.143  Sum_probs=112.0

Q ss_pred             CCCCEEEEe-eCCCeEEEEECCCCceeEEeeCC-cccEEEEEEC--CCCCeEEEEecCC------------------CeE
Q 021247           70 PSGIIAASA-SLDSFVRVFDVDTNASIATLEAS-PSEVWQMQFD--PKGTTLAVAGGGS------------------ASV  127 (315)
Q Consensus        70 ~~g~~l~s~-~~d~~i~~w~~~~~~~~~~~~~~-~~~v~~~~~~--~~~~~~~~~~~~d------------------~~i  127 (315)
                      +||+++... ..+..|-+.|+.+.++.+.+... ...+-.++..  |+..+++.. +.+                  +.+
T Consensus        97 yDGrylFVNDkan~RVAvIdl~~fkt~kIi~iPn~~~~HG~r~~~~p~T~YV~~~-~e~~vP~pndg~~l~d~~~y~~~~  175 (459)
T d1fwxa2          97 YDGRFLFMNDKANTRVARVRCDVMKCDAILEIPNAKGIHGLRPQKWPRSNYVFCN-GEDETPLVNDGTNMEDVANYVNVF  175 (459)
T ss_dssp             EEEEEEEEEETTTTEEEEEETTTTEEEEEEECSSCCSEEEEEECCSSBCSEEEEE-ECSCEESSCSSSSTTCGG-EEEEE
T ss_pred             cceeEEEEEcCCCceEEEEECcceeeeEEEecCCCCCCceeecccCCCeEEEEcc-CccccccCCCCccccchhhcceEE
Confidence            378777654 46788999999998876654332 2334555554  444454432 221                  346


Q ss_pred             EEEecCCcceeeeecCCCCCCCCCCccCCCCcceEEEEECCCCCEEEEecCCC---------------cEEEEEc-----
Q 021247          128 KLWDTATWNLIATLSIPRPEGLKPTDKSSSKKFVLSVAWSPDGRRIACGSMDG---------------TISVFDV-----  187 (315)
Q Consensus       128 ~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~s~dg---------------~i~i~d~-----  187 (315)
                      .++|..+++....+..+..              ...+.++++|+++++.+.+.               .+.+++.     
T Consensus       176 t~ID~~tm~V~~QV~V~g~--------------ld~~~~s~dGK~af~TsyNSE~g~~l~e~ta~e~D~i~V~n~~rie~  241 (459)
T d1fwxa2         176 TAVDADKWEVAWQVLVSGN--------------LDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEK  241 (459)
T ss_dssp             EEEETTTTEEEEEEEESSC--------------CCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHH
T ss_pred             EEEecCCceEEEEeeeCCC--------------hhccccCCCCCEEEEEeccccCCcchhhcccccceEEEEechHHhHH
Confidence            6788888777766654321              34688899999988765331               1333332     


Q ss_pred             ------------------ccc---eeeeeecCCccceEEEEEcCCCCcEEEEEeCCCeEEEEeCCCC-----------ee
Q 021247          188 ------------------TRA---KFLHHLEGHFMPVRSLVYSPVDPRVLFSASDDTHVHMYDAEGK-----------SL  235 (315)
Q Consensus       188 ------------------~~~---~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~-----------~~  235 (315)
                                        +..   ..+..+... .....+..+|++..+++++..+.++.++|.+.-           ..
T Consensus       242 av~~Gk~~eingV~VVD~~~~~~~~v~~yIPVp-KsPHGV~vSPDGKyi~VaGKLs~tVSViD~~Ki~~~~~~~~~~~~~  320 (459)
T d1fwxa2         242 AIAAGDYQELNGVKVVDGRKEASSLFTRYIPIA-NNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSA  320 (459)
T ss_dssp             HHHHTCSEEETTEEEEECSGG--CSSEEEEEEE-SSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCC-GGGG
T ss_pred             hhhcCCcEEeCCceeecccccCCcceeEEEecC-CCCCceEECCCCCEEEEeCCcCCcEEEEEehhhhhhhcccCCcccc
Confidence                              210   001111111 123467889966666667778999999997531           11


Q ss_pred             EEEeecccccEEEEEEcCCCCeEEEEeCCCcEEEEecCc
Q 021247          236 VTAMSGHASWVLSVDASPDGAAITTGSSDRTVKLWDLNM  274 (315)
Q Consensus       236 ~~~~~~~~~~i~~~~~~~~~~~l~s~~~d~~i~iwd~~~  274 (315)
                      +..-....-.....+|+..|.-..|---|..|.-|++..
T Consensus       321 ~~~e~elglgPLht~fd~~g~aytslfids~v~kw~~~~  359 (459)
T d1fwxa2         321 VVAEPELGLGPLHTAFDGRGNAYTSLFLDSQVVKWNIED  359 (459)
T ss_dssp             EEECCBCCSCEEEEEECTTSEEEEEETTTTEEEEEEHHH
T ss_pred             EEeecccCcCccccccCCCceEEEEeeccceEEEEecch
Confidence            111112233456788998886556666899999999853

>d1fwxa2 b.69.3.1 (A:8-451) Nitrous oxide reductase, N-terminal domain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Paracoccus denitrificans [TaxId: 266]

Probab=98.16  E-value=0.00087  Score=54.33  Aligned_cols=187  Identities=14%  Similarity=0.155  Sum_probs=112.9

Q ss_pred             CCCeEEEEecCCCeEEEEecCCcceeeeecCCCCCCCCCCccCCCCcceEEEEECC--CCCEEEEecCC-----------
Q 021247          113 KGTTLAVAGGGSASVKLWDTATWNLIATLSIPRPEGLKPTDKSSSKKFVLSVAWSP--DGRRIACGSMD-----------  179 (315)
Q Consensus       113 ~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~--~~~~l~~~s~d-----------  179 (315)
                      +|+++++....+..|.+.|+++.+..+.+.+|...+            +..++..+  +-.++++.+..           
T Consensus        98 DGrylFVNDkan~RVAvIdl~~fkt~kIi~iPn~~~------------~HG~r~~~~p~T~YV~~~~e~~vP~pndg~~l  165 (459)
T d1fwxa2          98 DGRFLFMNDKANTRVARVRCDVMKCDAILEIPNAKG------------IHGLRPQKWPRSNYVFCNGEDETPLVNDGTNM  165 (459)
T ss_dssp             EEEEEEEEETTTTEEEEEETTTTEEEEEEECSSCCS------------EEEEEECCSSBCSEEEEEECSCEESSCSSSST
T ss_pred             ceeEEEEEcCCCceEEEEECcceeeeEEEecCCCCC------------CceeecccCCCeEEEEccCccccccCCCCccc
Confidence            678888888889999999999999877776654432            34455443  44566665542           


Q ss_pred             -------CcEEEEEcccceeeeeecCCccceEEEEEcCCCCcEEEEEeCC---C------------eEEEEeC-------
Q 021247          180 -------GTISVFDVTRAKFLHHLEGHFMPVRSLVYSPVDPRVLFSASDD---T------------HVHMYDA-------  230 (315)
Q Consensus       180 -------g~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d---~------------~i~~wd~-------  230 (315)
                             +.+..+|..+.+....+... .....+.++|+ ++++++.+.+   +            .+.+++.       
T Consensus       166 ~d~~~y~~~~t~ID~~tm~V~~QV~V~-g~ld~~~~s~d-GK~af~TsyNSE~g~~l~e~ta~e~D~i~V~n~~rie~av  243 (459)
T d1fwxa2         166 EDVANYVNVFTAVDADKWEVAWQVLVS-GNLDNCDADYE-GKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAI  243 (459)
T ss_dssp             TCGG-EEEEEEEEETTTTEEEEEEEES-SCCCCEEECSS-SSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHH
T ss_pred             cchhhcceEEEEEecCCceEEEEeeeC-CChhccccCCC-CCEEEEEeccccCCcchhhcccccceEEEEechHHhHHhh
Confidence                   23667888877766554322 23456778885 4555554421   1            2344442       


Q ss_pred             ----------------CCC---eeEEEeecccccEEEEEEcCCCCeEE-EEeCCCcEEEEecCcccee--------hccc
Q 021247          231 ----------------EGK---SLVTAMSGHASWVLSVDASPDGAAIT-TGSSDRTVKLWDLNMRAAM--------QSMT  282 (315)
Q Consensus       231 ----------------~~~---~~~~~~~~~~~~i~~~~~~~~~~~l~-s~~~d~~i~iwd~~~~~~~--------~~~~  282 (315)
                                      +..   ..+..+. -......+.++|||++++ ++..+.++.|+|++.-..+        ..+.
T Consensus       244 ~~Gk~~eingV~VVD~~~~~~~~v~~yIP-VpKsPHGV~vSPDGKyi~VaGKLs~tVSViD~~Ki~~~~~~~~~~~~~~~  322 (459)
T d1fwxa2         244 AAGDYQELNGVKVVDGRKEASSLFTRYIP-IANNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVV  322 (459)
T ss_dssp             HHTCSEEETTEEEEECSGG--CSSEEEEE-EESSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCC-GGGGEE
T ss_pred             hcCCcEEeCCceeecccccCCcceeEEEe-cCCCCCceEECCCCCEEEEeCCcCCcEEEEEehhhhhhhcccCCccccEE
Confidence                            210   1111111 112245689999999875 4556889999999642111        1111


Q ss_pred             ---ccccceEEEEEeeCCCEEEEEeCCCcEEEeec
Q 021247          283 ---NHTDQVWGVSFRPLGGRVVSVSDDKSISLYEY  314 (315)
Q Consensus       283 ---~~~~~v~~~~~s~~~~~l~s~~~d~~i~i~~~  314 (315)
                         ...-.....+|..+|+-..|.--|..|--|++
T Consensus       323 ~e~elglgPLht~fd~~g~aytslfids~v~kw~~  357 (459)
T d1fwxa2         323 AEPELGLGPLHTAFDGRGNAYTSLFLDSQVVKWNI  357 (459)
T ss_dssp             ECCBCCSCEEEEEECTTSEEEEEETTTTEEEEEEH
T ss_pred             eecccCcCccccccCCCceEEEEeeccceEEEEec
Confidence               11223456789888866667778999999986

>d1npea_ b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Nidogen
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.11  E-value=0.00098  Score=51.22  Aligned_cols=223  Identities=7%  Similarity=-0.022  Sum_probs=135.2

Q ss_pred             ccccceEEEEEeecCCCCCcEEEEeeCCCcEEEEcCCCCcceeeccccccceEEEEeCCCC-CEEEEeeCCCeEEEEECC
Q 021247           12 AHEESVWAVTWVPATETRPALLLTGSLDETVKLWRPDDMQLERTNTGHCLGVVSVAAHPSG-IIAASASLDSFVRVFDVD   90 (315)
Q Consensus        12 ~h~~~v~~v~~~~~~~~~~~~l~sgs~d~~v~~w~~~~~~~~~~~~~h~~~v~~~~~~~~g-~~l~s~~~d~~i~~w~~~   90 (315)
                      .+...+.+++|.+..+   .+..+-..++.|+..+++..............+..+++..-+ .+.++-...+.|.+.++.
T Consensus        33 ~~~~~~~~ld~D~~~~---~iywsd~~~~~I~~~~l~g~~~~~v~~~~~~~p~~iAvD~~~~~lY~~d~~~~~I~~~~~d  109 (263)
T d1npea_          33 IPAKVIIGLAFDCVDK---VVYWTDISEPSIGRASLHGGEPTTIIRQDLGSPEGIALDHLGRTIFWTDSQLDRIEVAKMD  109 (263)
T ss_dssp             EEEEEEEEEEEETTTT---EEEEEETTTTEEEEEESSSCCCEEEECTTCCCEEEEEEETTTTEEEEEETTTTEEEEEETT
T ss_pred             cCCCcEEEEEEEeCCC---EEEEEECCCCeEEEEEcccCCcEEEEEeccccccEEEEeccCCeEEEeccCCCEEEEEecC
Confidence            4445677788876543   244444566778888776555444443333467888887644 455566677899999998


Q ss_pred             CCceeEEeeCCcccEEEEEECCCCCeEEEEecCCCe--EEEEecCCcceeeeecCCCCCCCCCCccCCCCcceEEEEECC
Q 021247           91 TNASIATLEASPSEVWQMQFDPKGTTLAVAGGGSAS--VKLWDTATWNLIATLSIPRPEGLKPTDKSSSKKFVLSVAWSP  168 (315)
Q Consensus        91 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~--i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~  168 (315)
                      .......+.........++++|....++.+-.....  |..-++...+......             ..-.....+++.+
T Consensus       110 g~~~~~l~~~~l~~p~~l~vdp~~g~ly~t~~~~~~~~I~r~~~dG~~~~~i~~-------------~~~~~P~glaiD~  176 (263)
T d1npea_         110 GTQRRVLFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTNRRILAQ-------------DNLGLPNGLTFDA  176 (263)
T ss_dssp             SCSCEEEECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSCCCEEEEC-------------TTCSCEEEEEEET
T ss_pred             CceEEEEecccccCCcEEEEecccCcEEEeecCCCCcEEEEecCCCCCceeeee-------------ecccccceEEEee
Confidence            765544444444678899999998888766433333  4333444322221110             1112357899988


Q ss_pred             CCCEE-EEecCCCcEEEEEcccceeeeeecCCccceEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCeeEEEee-cccccE
Q 021247          169 DGRRI-ACGSMDGTISVFDVTRAKFLHHLEGHFMPVRSLVYSPVDPRVLFSASDDTHVHMYDAEGKSLVTAMS-GHASWV  246 (315)
Q Consensus       169 ~~~~l-~~~s~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~-~~~~~i  246 (315)
                      .++.| .+-...+.|...|+........+.+-. ....+++.  ++.++.+-...+.|...|..+++.+..+. ......
T Consensus       177 ~~~~lYw~d~~~~~I~~~~~~g~~~~~v~~~~~-~P~~lav~--~~~lYwtd~~~~~I~~~~~~~g~~~~~~~~~~~~~~  253 (263)
T d1npea_         177 FSSQLCWVDAGTHRAECLNPAQPGRRKVLEGLQ-YPFAVTSY--GKNLYYTDWKTNSVIAMDLAISKEMDTFHPHKQTRL  253 (263)
T ss_dssp             TTTEEEEEETTTTEEEEEETTEEEEEEEEECCC-SEEEEEEE--TTEEEEEETTTTEEEEEETTTTEEEEEECCSSCCCC
T ss_pred             cCcEEEEEeCCCCEEEEEECCCCCeEEEECCCC-CcEEEEEE--CCEEEEEECCCCEEEEEECCCCccceEECCCCCCCc
Confidence            77766 455677889999987554433333322 23567765  56666777778889999988776655443 222334


Q ss_pred             EEEEEcC
Q 021247          247 LSVDASP  253 (315)
Q Consensus       247 ~~~~~~~  253 (315)
                      .++.+.+
T Consensus       254 ~gi~v~~  260 (263)
T d1npea_         254 YGITIAL  260 (263)
T ss_dssp             CCEEEEC
T ss_pred             ceEEEeC
Confidence            4444433

>d1npea_ b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Nidogen
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.10  E-value=0.001  Score=51.11  Aligned_cols=223  Identities=7%  Similarity=0.042  Sum_probs=138.7

Q ss_pred             cccceEEEEeCCCCC-EEEEeeCCCeEEEEECCCCceeEEeeCCcccEEEEEECCCCCeEEEEecCCCeEEEEecCCcce
Q 021247           59 HCLGVVSVAAHPSGI-IAASASLDSFVRVFDVDTNASIATLEASPSEVWQMQFDPKGTTLAVAGGGSASVKLWDTATWNL  137 (315)
Q Consensus        59 h~~~v~~~~~~~~g~-~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~~d~~~~~~  137 (315)
                      +...+..+++++.++ ++.+-..++.|+..+++.......+......+..++++..+..++++-...+.|.+.++.....
T Consensus        34 ~~~~~~~ld~D~~~~~iywsd~~~~~I~~~~l~g~~~~~v~~~~~~~p~~iAvD~~~~~lY~~d~~~~~I~~~~~dg~~~  113 (263)
T d1npea_          34 PAKVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTTIIRQDLGSPEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQR  113 (263)
T ss_dssp             EEEEEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEEEECTTCCCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC
T ss_pred             CCCcEEEEEEEeCCCEEEEEECCCCeEEEEEcccCCcEEEEEeccccccEEEEeccCCeEEEeccCCCEEEEEecCCceE
Confidence            334567788887665 4455566788999998766555445444456788999887777877777788999998865432


Q ss_pred             eeeecCCCCCCCCCCccCCCCcceEEEEECCCCCEEEEe-c--CCCcEEEEEcccceeeeeecCCccceEEEEEcCCCCc
Q 021247          138 IATLSIPRPEGLKPTDKSSSKKFVLSVAWSPDGRRIACG-S--MDGTISVFDVTRAKFLHHLEGHFMPVRSLVYSPVDPR  214 (315)
Q Consensus       138 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-s--~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~  214 (315)
                      .....             .....+..++++|...++.-. .  ..+.|.-.++..................+++.+.+.+
T Consensus       114 ~~l~~-------------~~l~~p~~l~vdp~~g~ly~t~~~~~~~~I~r~~~dG~~~~~i~~~~~~~P~glaiD~~~~~  180 (263)
T d1npea_         114 RVLFD-------------TGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTNRRILAQDNLGLPNGLTFDAFSSQ  180 (263)
T ss_dssp             EEEEC-------------SSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSCCCEEEECTTCSCEEEEEEETTTTE
T ss_pred             EEEec-------------ccccCCcEEEEecccCcEEEeecCCCCcEEEEecCCCCCceeeeeecccccceEEEeecCcE
Confidence            21111             011236789999876665433 2  2233555555433322223233345678999886666


Q ss_pred             EEEEEeCCCeEEEEeCCCCeeEEEeecccccEEEEEEcCCCCeEEEEeCCCcEEEEecCccceehcccc-cccceEEEEE
Q 021247          215 VLFSASDDTHVHMYDAEGKSLVTAMSGHASWVLSVDASPDGAAITTGSSDRTVKLWDLNMRAAMQSMTN-HTDQVWGVSF  293 (315)
Q Consensus       215 ~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~-~~~~v~~~~~  293 (315)
                      +..+-...+.|...+..+......+.+- ....++++. ++.+..+-...+.|...|..+++....+.. ......+++.
T Consensus       181 lYw~d~~~~~I~~~~~~g~~~~~v~~~~-~~P~~lav~-~~~lYwtd~~~~~I~~~~~~~g~~~~~~~~~~~~~~~gi~v  258 (263)
T d1npea_         181 LCWVDAGTHRAECLNPAQPGRRKVLEGL-QYPFAVTSY-GKNLYYTDWKTNSVIAMDLAISKEMDTFHPHKQTRLYGITI  258 (263)
T ss_dssp             EEEEETTTTEEEEEETTEEEEEEEEECC-CSEEEEEEE-TTEEEEEETTTTEEEEEETTTTEEEEEECCSSCCCCCCEEE
T ss_pred             EEEEeCCCCEEEEEECCCCCeEEEECCC-CCcEEEEEE-CCEEEEEECCCCEEEEEECCCCccceEECCCCCCCcceEEE
Confidence            6677677889999999876543333332 234678776 445556666778898889887776654422 2234445555


Q ss_pred             eeC
Q 021247          294 RPL  296 (315)
Q Consensus       294 s~~  296 (315)
                      .++
T Consensus       259 ~~~  261 (263)
T d1npea_         259 ALS  261 (263)
T ss_dssp             ECS
T ss_pred             eCC
Confidence            443

>d1ijqa1 b.68.5.1 (A:377-642) Low density lipoprotein (LDL) receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Low density lipoprotein (LDL) receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.09  E-value=0.0011  Score=51.07  Aligned_cols=229  Identities=8%  Similarity=-0.009  Sum_probs=140.2

Q ss_pred             CcEEEEcCCCCcceeeccccccceEEEEeCCCCCE-EEEeeCCCeEEEEECCCCc----eeEEeeCCcccEEEEEECCCC
Q 021247           40 ETVKLWRPDDMQLERTNTGHCLGVVSVAAHPSGII-AASASLDSFVRVFDVDTNA----SIATLEASPSEVWQMQFDPKG  114 (315)
Q Consensus        40 ~~v~~w~~~~~~~~~~~~~h~~~v~~~~~~~~g~~-l~s~~~d~~i~~w~~~~~~----~~~~~~~~~~~v~~~~~~~~~  114 (315)
                      ..|+..++++.+.....++ ...+..+.+++.+.. ..+-..++.|+-.+++...    ....+......+..+++++.+
T Consensus        10 ~~I~~~~l~~~~~~~~~~~-~~~~~~id~d~~~~~lYw~D~~~~~I~~~~l~~~~~~~~~~~~~~~~~~~p~glAvD~~~   88 (266)
T d1ijqa1          10 HEVRKMTLDRSEYTSLIPN-LRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIH   88 (266)
T ss_dssp             SSEEEEETTSCCCEEEECS-CSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEETTT
T ss_pred             CeEEEEECCCCcceeeeCC-CCceEEEEEEeCCCEEEEEECCCCEEEEEEecCCCCCcceEEEEeCCCCCcceEEEeecc
Confidence            3588788876655444433 345678899876654 4454566778777765422    112233333456678898888


Q ss_pred             CeEEEEecCCCeEEEEecCCcceeeeecCCCCCCCCCCccCCCCcceEEEEECCCCCEEE-Ee-cCCCcEEEEEccccee
Q 021247          115 TTLAVAGGGSASVKLWDTATWNLIATLSIPRPEGLKPTDKSSSKKFVLSVAWSPDGRRIA-CG-SMDGTISVFDVTRAKF  192 (315)
Q Consensus       115 ~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~-~~-s~dg~i~i~d~~~~~~  192 (315)
                      ..++++-...+.|.+.++........+..             .......++++|...++. +. +..+.|.-.++.....
T Consensus        89 ~~lY~~d~~~~~I~v~~~~g~~~~~~~~~-------------~~~~P~~l~vd~~~g~ly~~~~~~~~~I~r~~~dGs~~  155 (266)
T d1ijqa1          89 SNIYWTDSVLGTVSVADTKGVKRKTLFRE-------------NGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDI  155 (266)
T ss_dssp             TEEEEEETTTTEEEEEETTSSSEEEEEEC-------------TTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCE
T ss_pred             ceEEEEecCCCEEEeEecCCceEEEEEcC-------------CCCCcceEEEEcccCeEEEeccCCCcceeEeccCCCce
Confidence            88888877888999999876543332211             112367889988655544 43 3445677777754333


Q ss_pred             eeeecCCccceEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCeeEEEee--cccccEEEEEEcCCCCeEEEEeCCCcEEEE
Q 021247          193 LHHLEGHFMPVRSLVYSPVDPRVLFSASDDTHVHMYDAEGKSLVTAMS--GHASWVLSVDASPDGAAITTGSSDRTVKLW  270 (315)
Q Consensus       193 ~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~--~~~~~i~~~~~~~~~~~l~s~~~d~~i~iw  270 (315)
                      .............+++.+.+.++..+-...+.|...++.+........  .......++++. ++.+..+-..++.|...
T Consensus       156 ~~l~~~~~~~p~gl~iD~~~~~lYw~d~~~~~I~~~~~dG~~~~~~~~~~~~~~~p~~lav~-~~~ly~td~~~~~I~~~  234 (266)
T d1ijqa1         156 YSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVF-EDKVFWTDIINEAIFSA  234 (266)
T ss_dssp             EEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEECTTTTSSEEEEEEE-TTEEEEEETTTTEEEEE
T ss_pred             ecccccccceeeEEEeeccccEEEEecCCcCEEEEEECCCCCEEEEEeCCCcccccEEEEEE-CCEEEEEECCCCeEEEE
Confidence            333333334568899988777777777778899999987654333222  223446678877 34555666677888888


Q ss_pred             ecCccceehcccc
Q 021247          271 DLNMRAAMQSMTN  283 (315)
Q Consensus       271 d~~~~~~~~~~~~  283 (315)
                      +...+.....+..
T Consensus       235 ~~~~g~~~~~~~~  247 (266)
T d1ijqa1         235 NRLTGSDVNLLAE  247 (266)
T ss_dssp             ETTTCCCCEEEEC
T ss_pred             ECCCCcceEEEEc
Confidence            8776655544433

>d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Galactose oxidase, central domain
family: Galactose oxidase, central domain
domain: Galactose oxidase, central domain
species: Fungi (Fusarium sp.) [TaxId: 29916]

Probab=98.07  E-value=0.0017  Score=52.59  Aligned_cols=273  Identities=11%  Similarity=0.073  Sum_probs=134.7

Q ss_pred             EEEEcCCCCcceee---ccccccceEEEEeCCCCCEEEEeeCC-CeEEEEECCCCceeEEeeCC-cccEEEEEECCCCCe
Q 021247           42 VKLWRPDDMQLERT---NTGHCLGVVSVAAHPSGIIAASASLD-SFVRVFDVDTNASIATLEAS-PSEVWQMQFDPKGTT  116 (315)
Q Consensus        42 v~~w~~~~~~~~~~---~~~h~~~v~~~~~~~~g~~l~s~~~d-~~i~~w~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~  116 (315)
                      +.+||+.+.+-...   ...|........+.++|.+++.|+.+ ..+.+||..+..-...-... ...--.++..+++..
T Consensus        54 ~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~~~g~i~v~Gg~~~~~~~~yd~~~~~w~~~~~~~~~r~~~~~~~~~dG~v  133 (387)
T d1k3ia3          54 TSSWDPSTGIVSDRTVTVTKHDMFCPGISMDGNGQIVVTGGNDAKKTSLYDSSSDSWIPGPDMQVARGYQSSATMSDGRV  133 (387)
T ss_dssp             EEEECTTTCCBCCCEEEECSCCCSSCEEEECTTSCEEEECSSSTTCEEEEEGGGTEEEECCCCSSCCSSCEEEECTTSCE
T ss_pred             EEEEECCCCcEeecCCCCCCcccceeEEEEecCCcEEEeecCCCcceeEecCccCcccccccccccccccceeeecCCce
Confidence            67898876543221   12233333455778999999988765 58999999876543221111 111224556667775


Q ss_pred             EEEEecCC-----CeEEEEecCCcceeeeecCCCCCCCCCCc-cCCCCcceEEEEECCCCCEEEEecCCCcEEEEEcccc
Q 021247          117 LAVAGGGS-----ASVKLWDTATWNLIATLSIPRPEGLKPTD-KSSSKKFVLSVAWSPDGRRIACGSMDGTISVFDVTRA  190 (315)
Q Consensus       117 ~~~~~~~d-----~~i~~~d~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~~~~~~~~~~~l~~~s~dg~i~i~d~~~~  190 (315)
                      +++.|..+     ..+.+||..+.+....-............ ..........+...++|+.+..+...+.+..+|..+.
T Consensus       134 ~v~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~g~~~~~~~~~~~~~~  213 (387)
T d1k3ia3         134 FTIGGSWSGGVFEKNGEVYSPSSKTWTSLPNAKVNPMLTADKQGLYRSDNHAWLFGWKKGSVFQAGPSTAMNWYYTSGSG  213 (387)
T ss_dssp             EEECCCCCSSSCCCCEEEEETTTTEEEEETTSCSGGGCCCCTTGGGTTTCSCCEEECGGGCEEECCSSSEEEEEECSTTC
T ss_pred             eeeccccccccccceeeeecCCCCceeecCCCcccccccccccceeeccceeEEEEeCCCCEEEecCcCCcEEecCcccC
Confidence            54433222     46899998876543221111110000000 0000000112233456777888877888888887766


Q ss_pred             eeeeeec--C----C--ccceEEEEEcCCCCcEEEEEeCCC--------eEEEEeCCC---CeeEE-Eee--cccccEEE
Q 021247          191 KFLHHLE--G----H--FMPVRSLVYSPVDPRVLFSASDDT--------HVHMYDAEG---KSLVT-AMS--GHASWVLS  248 (315)
Q Consensus       191 ~~~~~~~--~----~--~~~v~~~~~~~~~~~~l~s~~~d~--------~i~~wd~~~---~~~~~-~~~--~~~~~i~~  248 (315)
                      .......  .    +  ...-.++.+...++++++.|+...        ...+.+...   ..... ...  .+...-.+
T Consensus       214 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~v~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~  293 (387)
T d1k3ia3         214 DVKSAGKRQSNRGVAPDAMCGNAVMYDAVKGKILTFGGSPDYQDSDATTNAHIITLGEPGTSPNTVFASNGLYFARTFHT  293 (387)
T ss_dssp             EEEEEEECEETTEECCCCBTCEEEEEETTTTEEEEECCBSSSSSSBCCCCEEEEECCSTTSCCEEEECTTCCSSCCBSCE
T ss_pred             cEeeccccccCcccCcccccccEEEeeccCCceEEEEeccCCCCCcccceeecccccccccCCCceeeccccccccccce
Confidence            5432210  0    0  011123333334566666665321        223333221   11111 110  01111123


Q ss_pred             EEEcCCCCeEEEEeCCC-----------cEEEEecCccc--eehcccccccceEEEEEeeCCCEEEEEeC--------CC
Q 021247          249 VDASPDGAAITTGSSDR-----------TVKLWDLNMRA--AMQSMTNHTDQVWGVSFRPLGGRVVSVSD--------DK  307 (315)
Q Consensus       249 ~~~~~~~~~l~s~~~d~-----------~i~iwd~~~~~--~~~~~~~~~~~v~~~~~s~~~~~l~s~~~--------d~  307 (315)
                      ....+++++++.|+.+.           ++.+||..+.+  .+..+...+..=....+.+||+.++.||.        +-
T Consensus       294 ~~~~~dg~i~v~GG~~~~~~~~~~~~~~~ve~Ydp~~~~W~~~~~~~~~R~~Hs~a~l~~dG~v~v~GG~~~~~~~~~~~  373 (387)
T d1k3ia3         294 SVVLPDGSTFITGGQRRGIPFEDSTPVFTPEIYVPEQDTFYKQNPNSIVRVYHSISLLLPDGRVFNGGGGLCGDCTTNHF  373 (387)
T ss_dssp             EEECTTSCEEEECCBSBCCTTCCCSBCCCCEEEEGGGTEEEECCCCSSCCCTTEEEEECTTSCEEEEECCCCTTCSCCCC
T ss_pred             eeeccCCeEEEECCcccCccCCCCcEeceEEEEECCCCeEEECCCCCCcccceEEEEECCCCEEEEEeCCCcCCCCcccc
Confidence            44567899999988531           47789876543  22222211100013446799999988884        23


Q ss_pred             cEEEeec
Q 021247          308 SISLYEY  314 (315)
Q Consensus       308 ~i~i~~~  314 (315)
                      .|.+|+.
T Consensus       374 ~~e~y~P  380 (387)
T d1k3ia3         374 DAQIFTP  380 (387)
T ss_dssp             EEEEEEC
T ss_pred             eEEEEcc
Confidence            5677763

>d1ijqa1 b.68.5.1 (A:377-642) Low density lipoprotein (LDL) receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Low density lipoprotein (LDL) receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.77  E-value=0.0044  Score=47.49  Aligned_cols=216  Identities=12%  Similarity=0.060  Sum_probs=129.5

Q ss_pred             CeEEEEECCCCceeEEeeCCcccEEEEEECCCCCeEEEEecCCCeEEEEecCCccee---eeecCCCCCCCCCCccCCCC
Q 021247           82 SFVRVFDVDTNASIATLEASPSEVWQMQFDPKGTTLAVAGGGSASVKLWDTATWNLI---ATLSIPRPEGLKPTDKSSSK  158 (315)
Q Consensus        82 ~~i~~w~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~---~~~~~~~~~~~~~~~~~~~~  158 (315)
                      ..|+..++.+......+ .....+..++|++..+.++.+-...+.|.-.++...+..   ....            ....
T Consensus        10 ~~I~~~~l~~~~~~~~~-~~~~~~~~id~d~~~~~lYw~D~~~~~I~~~~l~~~~~~~~~~~~~------------~~~~   76 (266)
T d1ijqa1          10 HEVRKMTLDRSEYTSLI-PNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVI------------SRDI   76 (266)
T ss_dssp             SSEEEEETTSCCCEEEE-CSCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEE------------CSSC
T ss_pred             CeEEEEECCCCcceeee-CCCCceEEEEEEeCCCEEEEEECCCCEEEEEEecCCCCCcceEEEE------------eCCC
Confidence            34888888776544333 344567789999988888877666677776655432111   0110            0111


Q ss_pred             cceEEEEECCCCCEE-EEecCCCcEEEEEcccceeeeeecCCccceEEEEEcCCCCcEEEEEe-CCCeEEEEeCCCCeeE
Q 021247          159 KFVLSVAWSPDGRRI-ACGSMDGTISVFDVTRAKFLHHLEGHFMPVRSLVYSPVDPRVLFSAS-DDTHVHMYDAEGKSLV  236 (315)
Q Consensus       159 ~~i~~~~~~~~~~~l-~~~s~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~-~d~~i~~wd~~~~~~~  236 (315)
                      ..+..+++.+.++.| .+-...+.|.+.++........+.........+++.|..+.++.+.. ..+.|...++.+....
T Consensus        77 ~~p~glAvD~~~~~lY~~d~~~~~I~v~~~~g~~~~~~~~~~~~~P~~l~vd~~~g~ly~~~~~~~~~I~r~~~dGs~~~  156 (266)
T d1ijqa1          77 QAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIY  156 (266)
T ss_dssp             SCCCEEEEETTTTEEEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEE
T ss_pred             CCcceEEEeeccceEEEEecCCCEEEeEecCCceEEEEEcCCCCCcceEEEEcccCeEEEeccCCCcceeEeccCCCcee
Confidence            225678888765555 45567778999998765544444444556789999987776666653 3457877888765444


Q ss_pred             EEeecccccEEEEEEcCCCCeE-EEEeCCCcEEEEecCccceehcc--cccccceEEEEEeeCCCEEE-EEeCCCcEEEe
Q 021247          237 TAMSGHASWVLSVDASPDGAAI-TTGSSDRTVKLWDLNMRAAMQSM--TNHTDQVWGVSFRPLGGRVV-SVSDDKSISLY  312 (315)
Q Consensus       237 ~~~~~~~~~i~~~~~~~~~~~l-~s~~~d~~i~iwd~~~~~~~~~~--~~~~~~v~~~~~s~~~~~l~-s~~~d~~i~i~  312 (315)
                      ......-..+.++++++.+..| .+-...+.|...+++........  ........++++.  +.+|. +-..++.|...
T Consensus       157 ~l~~~~~~~p~gl~iD~~~~~lYw~d~~~~~I~~~~~dG~~~~~~~~~~~~~~~p~~lav~--~~~ly~td~~~~~I~~~  234 (266)
T d1ijqa1         157 SLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVF--EDKVFWTDIINEAIFSA  234 (266)
T ss_dssp             EEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEECTTTTSSEEEEEEE--TTEEEEEETTTTEEEEE
T ss_pred             cccccccceeeEEEeeccccEEEEecCCcCEEEEEECCCCCEEEEEeCCCcccccEEEEEE--CCEEEEEECCCCeEEEE
Confidence            4344444668899999876644 55566788988888654322211  2222345567665  34554 33445565444

>d2ad6a1 b.70.1.1 (A:1-571) Methanol dehydrogenase, heavy chain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Methanol dehydrogenase, heavy chain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=97.44  E-value=0.027  Score=48.06  Aligned_cols=203  Identities=12%  Similarity=0.021  Sum_probs=105.5

Q ss_pred             cEEEEee-CCCcEEEEcC-CCCcceeeccc---c-ccce-------EEEEeCCCCCEEEEeeCCCeEEEEECCCCceeEE
Q 021247           31 ALLLTGS-LDETVKLWRP-DDMQLERTNTG---H-CLGV-------VSVAAHPSGIIAASASLDSFVRVFDVDTNASIAT   97 (315)
Q Consensus        31 ~~l~sgs-~d~~v~~w~~-~~~~~~~~~~~---h-~~~v-------~~~~~~~~g~~l~s~~~d~~i~~w~~~~~~~~~~   97 (315)
                      ..++.++ .++.|...|. ++++...++..   . ....       ..+++.  +..++.++.|+.+.-.|.++++....
T Consensus        63 g~vyv~t~~~~~v~Alda~~tG~~~W~~~~~~~~~~~~~~~~~~~~rg~a~~--~~~i~~~~~~g~l~alda~tG~~~w~  140 (571)
T d2ad6a1          63 DMMYVHSAFPNNTYALNLNDPGKIVWQHKPKQDASTKAVMCCDVVDRGLAYG--AGQIVKKQANGHLLALDAKTGKINWE  140 (571)
T ss_dssp             TEEEEECSTTTCEEEEETTCTTSEEEEECCCCCGGGGGGCTTCSCCCCCEEE--TTEEEEECTTSEEEEEETTTCCEEEE
T ss_pred             CEEEEecCCCCeEEEEeCCCCCceEEEecCCCCcccccccccCcCCCcceee--CCeEEEEeCCCcEEeeehhhhhhhcc
Confidence            3455555 4678887876 45766554321   0 0000       112221  33566678899999999999987765


Q ss_pred             eeCCcccE-EEEEECC--CCCeEEEEec-----CCCeEEEEecCCcceeeeecCCCCCCCC--------C----------
Q 021247           98 LEASPSEV-WQMQFDP--KGTTLAVAGG-----GSASVKLWDTATWNLIATLSIPRPEGLK--------P----------  151 (315)
Q Consensus        98 ~~~~~~~v-~~~~~~~--~~~~~~~~~~-----~d~~i~~~d~~~~~~~~~~~~~~~~~~~--------~----------  151 (315)
                      ........ ..+.-.|  -+..+++...     ..+.|+-+|+++++.+..+.........        .          
T Consensus       141 ~~~~~~~~~~~~t~~p~v~~~~vivg~~~~~~~~~G~v~a~D~~TG~~~W~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~  220 (571)
T d2ad6a1         141 VEVCDPKVGSTLTQAPFVAKDTVLMGCSGAELGVRGAVNAFDLKTGELKWRAFATGSDDSVRLAKDFNSANPHYGQFGLG  220 (571)
T ss_dssp             EECCCGGGTCBCCSCCEEETTEEEEECBCGGGTCCCEEEEEETTTCCEEEEEESSSCHHHHTBCTTTTTTCGGGCCSSHH
T ss_pred             ccccccccccceeecCeEeCCeEEEeeccccccccCcEEEEECCCCcEEEEEeccCCcccccccccccccccccCccccc
Confidence            53221000 0000000  0123333332     3678999999999999876543211000        0          


Q ss_pred             -----C---ccCCCCcceEEEEECCCCCEEEEecC----------------CCcEEEEEcccceeeeeecCCcc------
Q 021247          152 -----T---DKSSSKKFVLSVAWSPDGRRIACGSM----------------DGTISVFDVTRAKFLHHLEGHFM------  201 (315)
Q Consensus       152 -----~---~~~~~~~~i~~~~~~~~~~~l~~~s~----------------dg~i~i~d~~~~~~~~~~~~~~~------  201 (315)
                           .   .......+ ...++.++...+..+..                ...+.-.|+++++.+-.......      
T Consensus       221 ~~~~~~~~~~~~gg~vW-~~~s~D~~~g~~y~~tg~~~p~~~~~r~g~n~~s~svvAld~~TG~~~W~~q~~~~D~Wd~D  299 (571)
T d2ad6a1         221 TKTWEGDAWKIGGGTNW-GWYAYDPKLNLFYYGSGNPAPWNETMRPGDNKWTMTIWGRDLDTGMAKWGYQKTPHDEWDFA  299 (571)
T ss_dssp             HHTSSTTGGGGCCCCCC-SCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTTTEEEEEETTTCCEEEEEESSTTCSSCCC
T ss_pred             ccccCCcccccCCCccc-cccccchhcCeeeeecccccCccccccccccccccceeeeeccchhheecccccCccccccc
Confidence                 0   00000000 23455566655554433                24577888898887654442111      


Q ss_pred             ----ce-EEEEEcCCCCcEEEEEeCCCeEEEEeCCCCeeE
Q 021247          202 ----PV-RSLVYSPVDPRVLFSASDDTHVHMYDAEGKSLV  236 (315)
Q Consensus       202 ----~v-~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~  236 (315)
                          ++ ..+.........++.++.+|.+.+.|.++++++
T Consensus       300 ~~~~~~l~~~~~~g~~~~~v~~~~k~G~l~vlDr~tG~~i  339 (571)
T d2ad6a1         300 GVNQMVLTDQPVNGKMTPLLSHIDRNGILYTLNRENGNLI  339 (571)
T ss_dssp             CCCCCEEEEEEETTEEEEEEEEECTTSEEEEEETTTCCEE
T ss_pred             cccccceeeeeccCccccceeeccccceEEEEecCCCcEe
Confidence                11 122222111125677888999999999888765

>d1kv9a2 b.70.1.1 (A:1-560) Quinoprotein alcohol dehydrogenase, N-terminal domain {Pseudomonas putida, hk5 [TaxId: 303]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Pseudomonas putida, hk5 [TaxId: 303]

Probab=97.42  E-value=0.028  Score=47.88  Aligned_cols=204  Identities=15%  Similarity=0.121  Sum_probs=111.1

Q ss_pred             cEEEEeeCCCcEEEEcCCCCcceeeccccc-------c---ce-EEEEeCCCCCEEEEeeCCCeEEEEECCCCceeEEee
Q 021247           31 ALLLTGSLDETVKLWRPDDMQLERTNTGHC-------L---GV-VSVAAHPSGIIAASASLDSFVRVFDVDTNASIATLE   99 (315)
Q Consensus        31 ~~l~sgs~d~~v~~w~~~~~~~~~~~~~h~-------~---~v-~~~~~~~~g~~l~s~~~d~~i~~w~~~~~~~~~~~~   99 (315)
                      ..++.++.++.|.-.|.+++++...+....       .   .+ ..+..  .+..++.+..|+.+.-.|..+++.+....
T Consensus        67 g~vyv~t~~~~v~AlDa~tG~~lW~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~v~~~~~~g~l~Alda~tG~~~w~~~  144 (560)
T d1kv9a2          67 GVIYTSMSWSRVIAVDAASGKELWRYDPEVAKVKARTSCCDAVNRGVAL--WGDKVYVGTLDGRLIALDAKTGKAIWSQQ  144 (560)
T ss_dssp             TEEEEEEGGGEEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCEE--EBTEEEEECTTSEEEEEETTTCCEEEEEE
T ss_pred             CEEEEECCCCeEEEEeCCCCCEEEEECCCCCccccccccccccccCcce--eCCeEEEEeCCCEEEEEECCCCcEEeccC
Confidence            467788888999888988887765532110       0   00 00111  13467778889999999999998877664


Q ss_pred             CCcc-cEEEEEECC--CCCeEEEEec-----CCCeEEEEecCCcceeeeecCCCCCCCCCCcc-----------------
Q 021247          100 ASPS-EVWQMQFDP--KGTTLAVAGG-----GSASVKLWDTATWNLIATLSIPRPEGLKPTDK-----------------  154 (315)
Q Consensus       100 ~~~~-~v~~~~~~~--~~~~~~~~~~-----~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~-----------------  154 (315)
                      .... .-..+.-.|  .+..+++...     ..+.|.-+|.++++.+.++....+....+...                 
T Consensus       145 ~~~~~~~~~~~~~p~v~~~~vivg~~~~~~~~~G~v~a~D~~TG~~~W~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~  224 (560)
T d1kv9a2         145 TTDPAKPYSITGAPRVVKGKVIIGNGGAEYGVRGFVSAYDADTGKLAWRFYTVPGDPALPYEHPELREAAKTWQGDQYWK  224 (560)
T ss_dssp             CSCTTSSCBCCSCCEEETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTTCCSSCHHH
T ss_pred             ccCcccceeeeeeeeeecCcccccccceeccccceEEEEECCCceEEeeeeeccccccCCcccccccccccccccccccc
Confidence            3211 000000000  0122222111     23679999999999998876533222111100                 


Q ss_pred             --CCCCcceEEEEECCCCCEEEEecC-------------------CCcEEEEEcccceeeeeecC--Cc-------c--c
Q 021247          155 --SSSKKFVLSVAWSPDGRRIACGSM-------------------DGTISVFDVTRAKFLHHLEG--HF-------M--P  202 (315)
Q Consensus       155 --~~~~~~i~~~~~~~~~~~l~~~s~-------------------dg~i~i~d~~~~~~~~~~~~--~~-------~--~  202 (315)
                        .....+ ..+++.+...++..+..                   ...|.-.|+.+++..-..+.  |.       .  .
T Consensus       225 ~~~G~~~W-~~~s~D~~~~l~y~~tgn~~~~~~~~~~~~~g~n~~s~sivAld~~tG~~~W~~Q~~~~D~wd~d~~~~~~  303 (560)
T d1kv9a2         225 LGGGGTVW-DSMAYDPELDLLYVGTGNGSPWNREVRSPGGGDNLYLSSILAIRPDTGKLAWHYQVTPGDSWDFTATQQIT  303 (560)
T ss_dssp             HCEECCCC-SCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCCCCCSCEE
T ss_pred             ccCCCCcc-cccccccccCeeeecCCCCcccccccccccCCccccceeeEEecCCccceeEEEeccccccccccccceee
Confidence              001111 13556666665544321                   23577778888876544332  11       0  1


Q ss_pred             eEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCeeEE
Q 021247          203 VRSLVYSPVDPRVLFSASDDTHVHMYDAEGKSLVT  237 (315)
Q Consensus       203 v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~  237 (315)
                      ...+.........++.+..+|.++++|.++++++.
T Consensus       304 l~~~~~~g~~~~~v~~~~k~G~~~~lDr~tG~~i~  338 (560)
T d1kv9a2         304 LAELNIDGKPRKVLMQAPKNGFFYVLDRTNGKLIS  338 (560)
T ss_dssp             EEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEE
T ss_pred             eeeeecCCceeeeeeecCccceEEEEecCCCcccc
Confidence            12222221122467778899999999998887654

>d1kb0a2 b.70.1.1 (A:1-573) Quinoprotein alcohol dehydrogenase, N-terminal domain {Comamonas testosteroni [TaxId: 285]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Comamonas testosteroni [TaxId: 285]

Probab=97.24  E-value=0.047  Score=46.59  Aligned_cols=205  Identities=13%  Similarity=0.074  Sum_probs=106.6

Q ss_pred             cEEEEeeCCCcEEEEcCCCCcceeecccc-------cc---ce-EEEEeCCCCCEEEEeeCCCeEEEEECCCCceeEEee
Q 021247           31 ALLLTGSLDETVKLWRPDDMQLERTNTGH-------CL---GV-VSVAAHPSGIIAASASLDSFVRVFDVDTNASIATLE   99 (315)
Q Consensus        31 ~~l~sgs~d~~v~~w~~~~~~~~~~~~~h-------~~---~v-~~~~~~~~g~~l~s~~~d~~i~~w~~~~~~~~~~~~   99 (315)
                      ..++.++.++.|.-+|.++++++..+...       ..   .+ ..+...  +..+..++.|+.+.-.|..+++.+....
T Consensus        78 g~vyv~t~~~~v~AlDa~TG~~~W~~~~~~~~~~~~~~~~~~~~~g~~~~--~~~v~~~t~~g~l~alda~tG~~~W~~~  155 (573)
T d1kb0a2          78 GIMYVSASWSVVHAIDTRTGNRIWTYDPQIDRSTGFKGCCDVVNRGVALW--KGKVYVGAWDGRLIALDAATGKEVWHQN  155 (573)
T ss_dssp             TEEEEECGGGCEEEEETTTTEEEEEECCCCCGGGGGGSSSCSCCCCCEEE--TTEEEEECTTSEEEEEETTTCCEEEEEE
T ss_pred             CEEEEECCCCeEEEEeCCCCCeEEEeCCCCCcccccccccccccccceEE--CCcEEEEecccceeeeccccccceeccc
Confidence            46788888999999999888876553211       00   00 011111  2345567788889888999998776554


Q ss_pred             CCcccE--EEEEECC--CCCeEEEEec------CCCeEEEEecCCcceeeeecCCCCCCCCCCcc------------C--
Q 021247          100 ASPSEV--WQMQFDP--KGTTLAVAGG------GSASVKLWDTATWNLIATLSIPRPEGLKPTDK------------S--  155 (315)
Q Consensus       100 ~~~~~v--~~~~~~~--~~~~~~~~~~------~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~------------~--  155 (315)
                      ......  ..+.-.|  -+..++ .+.      ..+.|..+|.++++++..+.........+...            .  
T Consensus       156 ~~~~~~~~~~~~~~p~v~~~~vi-vg~~~~~~~~~G~v~a~D~~TG~~~W~~~t~~~~~~~~~~~~~~~~~~~t~~~~~~  234 (573)
T d1kb0a2         156 TFEGQKGSLTITGAPRVFKGKVI-IGNGGAEYGVRGYITAYDAETGERKWRWFSVPGDPSKPFEDESMKRAARTWDPSGK  234 (573)
T ss_dssp             TTTTCCSSCBCCSCCEEETTEEE-ECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTTSCGGGC
T ss_pred             CccCCcceEEeecceEEEeccEE-EeeccccccccceEEEEecCCccceeeeeeccccCCCCCCcccccccccccCCCCc
Confidence            321110  0000000  012233 222      24689999999999998875433222111000            0  


Q ss_pred             ----CCCcce-EEEEECCCCCEEEEecC-------------------CCcEEEEEcccceeeeeecC--Cc-------cc
Q 021247          156 ----SSKKFV-LSVAWSPDGRRIACGSM-------------------DGTISVFDVTRAKFLHHLEG--HF-------MP  202 (315)
Q Consensus       156 ----~~~~~i-~~~~~~~~~~~l~~~s~-------------------dg~i~i~d~~~~~~~~~~~~--~~-------~~  202 (315)
                          .....+ ...++.++...+..+..                   ...|.-.|+.+++..-..+.  |.       .+
T Consensus       235 ~~~~~~G~~vW~~~s~D~~~g~~~~~~g~~~~~~~~~~~~~~g~~~~~~svvAld~~tG~~~W~~q~~~~d~wd~d~~~~  314 (573)
T d1kb0a2         235 WWEAGGGGTMWDSMTFDAELNTMYVGTGNGSPWSHKVRSPKGGDNLYLASIVALDPDTGKYKWHYQETPGDNWDYTSTQP  314 (573)
T ss_dssp             HHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCCCCCSC
T ss_pred             eeecCCCCcccccceEchhhCeeeeccCCCccccccccccccccccccceEEEecccchheeecccccCcccccccccce
Confidence                000001 13455555554443221                   12466667777765433321  11       11


Q ss_pred             e--EEEEEcCCCCcEEEEEeCCCeEEEEeCCCCeeEEE
Q 021247          203 V--RSLVYSPVDPRVLFSASDDTHVHMYDAEGKSLVTA  238 (315)
Q Consensus       203 v--~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~  238 (315)
                      .  ..+.........++.++.+|.+.++|.++++.+..
T Consensus       315 ~~l~~~~~~g~~~~~v~~~~k~G~l~~lDr~tGe~~~~  352 (573)
T d1kb0a2         315 MILADIKIAGKPRKVILHAPKNGFFFVLDRTNGKFISA  352 (573)
T ss_dssp             CEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEE
T ss_pred             eeecceecCCCceeeeeeccccceeEEecccccccccc
Confidence            1  12222211124577888899999999988876543

>d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Galactose oxidase, central domain
family: Galactose oxidase, central domain
domain: Galactose oxidase, central domain
species: Fungi (Fusarium sp.) [TaxId: 29916]

Probab=97.13  E-value=0.043  Score=43.91  Aligned_cols=154  Identities=13%  Similarity=0.110  Sum_probs=83.4

Q ss_pred             CCCCCEEEEeeCCC-----------eEEEEECCCCceeE--Ee-eCCcccEEEEEECCCCCeEEEEecCCCeEEEEecCC
Q 021247           69 HPSGIIAASASLDS-----------FVRVFDVDTNASIA--TL-EASPSEVWQMQFDPKGTTLAVAGGGSASVKLWDTAT  134 (315)
Q Consensus        69 ~~~g~~l~s~~~d~-----------~i~~w~~~~~~~~~--~~-~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~~d~~~  134 (315)
                      ..+|++++-|+.+.           .+.+||..++.-..  .. ..+........+.+++..+++.+.....+.+||..+
T Consensus        28 ~~~gkv~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~~~g~i~v~Gg~~~~~~~~yd~~~  107 (387)
T d1k3ia3          28 PTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKHDMFCPGISMDGNGQIVVTGGNDAKKTSLYDSSS  107 (387)
T ss_dssp             TTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECSCCCSSCEEEECTTSCEEEECSSSTTCEEEEEGGG
T ss_pred             eeCCEEEEEEeecCcccCCCCCceeEEEEEECCCCcEeecCCCCCCcccceeEEEEecCCcEEEeecCCCcceeEecCcc
Confidence            34566666555321           36789998875322  11 112222335567788875543333446899999987


Q ss_pred             cceeeeecCCCCCCCCCCccCCCCcceEEEEECCCCCEEEEecCC------CcEEEEEcccceeeeeecC---------C
Q 021247          135 WNLIATLSIPRPEGLKPTDKSSSKKFVLSVAWSPDGRRIACGSMD------GTISVFDVTRAKFLHHLEG---------H  199 (315)
Q Consensus       135 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~s~d------g~i~i~d~~~~~~~~~~~~---------~  199 (315)
                      ......-..+.            ...-.+++..++|+.++.|+.+      ..+.+||+.+.+....-..         +
T Consensus       108 ~~w~~~~~~~~------------~r~~~~~~~~~dG~v~v~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~  175 (387)
T d1k3ia3         108 DSWIPGPDMQV------------ARGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSKTWTSLPNAKVNPMLTADK  175 (387)
T ss_dssp             TEEEECCCCSS------------CCSSCEEEECTTSCEEEECCCCCSSSCCCCEEEEETTTTEEEEETTSCSGGGCCCCT
T ss_pred             Ccccccccccc------------cccccceeeecCCceeeeccccccccccceeeeecCCCCceeecCCCcccccccccc
Confidence            65542211111            1112356777889988887643      3589999987765321110         0


Q ss_pred             ccce----EEEEEcCCCCcEEEEEeCCCeEEEEeCCCCe
Q 021247          200 FMPV----RSLVYSPVDPRVLFSASDDTHVHMYDAEGKS  234 (315)
Q Consensus       200 ~~~v----~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~  234 (315)
                      ...+    ....+...+++++..++....+.+++.....
T Consensus       176 ~~~~~~~~~~~~~~~~~G~~~~~g~~~~~~~~~~~~~~~  214 (387)
T d1k3ia3         176 QGLYRSDNHAWLFGWKKGSVFQAGPSTAMNWYYTSGSGD  214 (387)
T ss_dssp             TGGGTTTCSCCEEECGGGCEEECCSSSEEEEEECSTTCE
T ss_pred             cceeeccceeEEEEeCCCCEEEecCcCCcEEecCcccCc
Confidence            0000    0111222245566666667777777776654

>d1utca2 b.69.6.1 (A:4-330) Clathrin heavy-chain terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Clathrin heavy-chain terminal domain
family: Clathrin heavy-chain terminal domain
domain: Clathrin heavy-chain terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.10  E-value=0.036  Score=42.47  Aligned_cols=253  Identities=11%  Similarity=0.156  Sum_probs=156.4

Q ss_pred             CcEEEEcCCCCcc-eeeccccccceEEEEeCCCCCEEEEeeCCCeEEEEECCCCceeEEeeCCcccEEEEEECCCCCeEE
Q 021247           40 ETVKLWRPDDMQL-ERTNTGHCLGVVSVAAHPSGIIAASASLDSFVRVFDVDTNASIATLEASPSEVWQMQFDPKGTTLA  118 (315)
Q Consensus        40 ~~v~~w~~~~~~~-~~~~~~h~~~v~~~~~~~~g~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~  118 (315)
                      ..|.+-|+.+... .+..-    ...+.--+|..+.++--+ ..+++++|+++.+.+..+... .+|.--.|-... .+.
T Consensus        45 ~~VvIidl~n~~~~~Rrpi----~AdsAIMhP~~~IiALra-g~~LQiFnletK~klks~~~~-e~VvfWkWis~~-~L~  117 (327)
T d1utca2          45 AQVVIIDMNDPSNPIRRPI----SADSAIMNPASKVIALKA-GKTLQIFNIEMKSKMKAHTMT-DDVTFWKWISLN-TVA  117 (327)
T ss_dssp             EEEEEEETTSTTSCEEEEC----CCSEEEECSSSSEEEEEE-TTEEEEEETTTTEEEEEEECS-SCCCEEEESSSS-EEE
T ss_pred             ceEEEEECCCCCcceeccc----chhhhhcCCCCcEEEEec-CCeEEEEehhHhhhhceEEcC-CCcEEEEecCCC-EEE
Confidence            4677777765432 22111    122444678888777655 568999999999988877654 456666776543 344


Q ss_pred             EEecCCCeEEEEecCCcc-eeeeecCCCCCCCCCCccCCCCcceEEEEECCCCCEEEEec---C----CCcEEEEEcccc
Q 021247          119 VAGGGSASVKLWDTATWN-LIATLSIPRPEGLKPTDKSSSKKFVLSVAWSPDGRRIACGS---M----DGTISVFDVTRA  190 (315)
Q Consensus       119 ~~~~~d~~i~~~d~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~s---~----dg~i~i~d~~~~  190 (315)
                      +.  .+..|.=|++.... +.+.+..  ..       ......|..-..+++.+|++..+   .    .|.+.+|..+.+
T Consensus       118 lV--T~taVYHW~~~g~s~P~k~fdR--~~-------~L~~~QIInY~~d~~~kW~~l~GI~~~~~~i~G~mQLYS~er~  186 (327)
T d1utca2         118 LV--TDNAVYHWSMEGESQPVKMFDR--HS-------SLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRK  186 (327)
T ss_dssp             EE--CSSEEEEEESSSSCCCEEEEEC--CG-------GGTTCEEEEEEECTTSCEEEEEEEEEETTEEEEEEEEEETTTT
T ss_pred             EE--cCCceEEEcccCCCCchhhhhh--cc-------cccCceEEEEEECCCCCEEEEEeEecCCCceeEEEEEEEeccC
Confidence            43  24678999985422 2222211  11       11234577888899999886543   2    356888988654


Q ss_pred             eeeeeecCCccceEEEEEcCC-CC-cEEEEEe---CCCeEEEEeCCCCe---e---EEE--e----ecccccEEEEEEcC
Q 021247          191 KFLHHLEGHFMPVRSLVYSPV-DP-RVLFSAS---DDTHVHMYDAEGKS---L---VTA--M----SGHASWVLSVDASP  253 (315)
Q Consensus       191 ~~~~~~~~~~~~v~~~~~~~~-~~-~~l~s~~---~d~~i~~wd~~~~~---~---~~~--~----~~~~~~i~~~~~~~  253 (315)
                       .-+.+.+|......+..... .+ .++.-+.   ..+++++.++....   .   .+.  +    ..-.+...++.+++
T Consensus       187 -~sQ~ieGhaa~F~~~~~~g~~~~~~lf~fa~r~~~~~kLhIiEig~~~~g~~~f~kk~vdi~fppea~~DFPvamqvs~  265 (327)
T d1utca2         187 -VSQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISE  265 (327)
T ss_dssp             -EEEEECCSEEEEEEECCTTCSSCEEEEEEEEEETTEEEEEEEECSCCCTTCCCCCCEEEECCCCTTCTTCCEEEEEEET
T ss_pred             -cCccccceeeeeEEEEcCCCCCCceEEEEEECCCCCcEEEEEEcCCCccCCCCCcceeEEEECCccccCCcEEEEEeec
Confidence             34567777666555554321 11 2333222   23678888864311   0   111  1    11245567888888


Q ss_pred             CCCeEEEEeCCCcEEEEecCccceehcccccccceEEEEEeeCCCEEEEEeCCCcEEE
Q 021247          254 DGAAITTGSSDRTVKLWDLNMRAAMQSMTNHTDQVWGVSFRPLGGRVVSVSDDKSISL  311 (315)
Q Consensus       254 ~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~i~i  311 (315)
                      .-.++..-++-|.|.++|+.++..+..-.--.+.|...+-+.+..=+++...+|.|..
T Consensus       266 kygiiyviTK~G~i~lyDleTgt~i~~nRIs~~~iF~~a~~~~~~Gi~~VNr~GqVl~  323 (327)
T d1utca2         266 KHDVVFLITKYGYIHLYDLETGTCIYMNRISGETIFVTAPHEATAGIIGVNRKGQVLS  323 (327)
T ss_dssp             TTTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEEETTTTEEEEEETTSEEEE
T ss_pred             cCCEEEEEecCcEEEEEEcccccEEEEeecCCCceEEeccCCCCceEEEECCCCeEEE
Confidence            8888888899999999999999887665445567775565666566777778887754

>d1w6sa_ b.70.1.1 (A:) Methanol dehydrogenase, heavy chain {Methylobacterium extorquens [TaxId: 408]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Methanol dehydrogenase, heavy chain
species: Methylobacterium extorquens [TaxId: 408]

Probab=97.03  E-value=0.079  Score=45.36  Aligned_cols=170  Identities=14%  Similarity=0.191  Sum_probs=94.3

Q ss_pred             EEEeecCCCCCcEEEEeeCCCcEEEEcCCCCcceeeccc---ccc-ceEEEEeCCCCCEEEEee------CCCeEEEEEC
Q 021247           20 VTWVPATETRPALLLTGSLDETVKLWRPDDMQLERTNTG---HCL-GVVSVAAHPSGIIAASAS------LDSFVRVFDV   89 (315)
Q Consensus        20 v~~~~~~~~~~~~l~sgs~d~~v~~w~~~~~~~~~~~~~---h~~-~v~~~~~~~~g~~l~s~~------~d~~i~~w~~   89 (315)
                      |++.+.......+++.++.|+.|.-.|..++++......   +.. .+++--.-..+ .++.+.      ..|.|+-+|.
T Consensus       111 v~~~~~~~~~~~~v~~~t~dg~l~Alda~tG~~~w~~~~~d~~~~~~~t~~P~v~~~-~vivg~~~~e~~~~G~v~A~Da  189 (596)
T d1w6sa_         111 LAYWPGDGKTPALILKTQLDGNVAALNAETGETVWKVENSDIKVGSTLTIAPYVVKD-KVIIGSSGAELGVRGYLTAYDV  189 (596)
T ss_dssp             CEEECCCSSSCCEEEEECTTSEEEEEETTTCCEEEEEECCCGGGTCBCCSCCEEETT-EEEECCBCGGGTCCCEEEEEET
T ss_pred             eEEecCCCCCceEEEEEeCCCCeEeeccccCceeccccccccccccccccCCcEECC-eEEEeeccccccccCceEEEEC
Confidence            444443333345788999999999999998887665421   111 11110000123 333332      3589999999


Q ss_pred             CCCceeEEeeCCc-------------------------------------ccEE-EEEECCCCCeEEEEecC--------
Q 021247           90 DTNASIATLEASP-------------------------------------SEVW-QMQFDPKGTTLAVAGGG--------  123 (315)
Q Consensus        90 ~~~~~~~~~~~~~-------------------------------------~~v~-~~~~~~~~~~~~~~~~~--------  123 (315)
                      .+++.+..+...+                                     ..+| .+++++....+++..+.        
T Consensus       190 ~TG~~~W~~~t~~~~~~~~~~~~~~~~~~~~g~~~~~~~tw~g~~~~~gg~~~W~~~s~D~~~~lvy~~tg~~~p~~~~~  269 (596)
T d1w6sa_         190 KTGEQVWRAYATGPDKDLLLASDFNIKNPHYGQKGLGTGTWEGDAWKIGGGTNWGWYAYDPGTNLIYFGTGNPAPWNETM  269 (596)
T ss_dssp             TTCCEEEEEESSSCHHHHTBCTTTTTTCGGGCCTTHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGG
T ss_pred             CCCcEEEEeeccCCccccccccccccccccccccccccccCCCCceecCCCccccccccccCCCeeeccccccccccccc
Confidence            9999887654221                                     1122 34556666655443221        


Q ss_pred             -------CCeEEEEecCCcceeeeecCCCCCCCCCCccCCCCcceEEEE-ECCCC---CEEEEecCCCcEEEEEccccee
Q 021247          124 -------SASVKLWDTATWNLIATLSIPRPEGLKPTDKSSSKKFVLSVA-WSPDG---RRIACGSMDGTISVFDVTRAKF  192 (315)
Q Consensus       124 -------d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~-~~~~~---~~l~~~s~dg~i~i~d~~~~~~  192 (315)
                             ...+...|.++++.+..+.......-    .........-+. -..+|   ..++....+|.++++|..+++.
T Consensus       270 r~g~n~ys~sivAlD~~TG~~~W~~Q~~~~D~W----d~d~~~~~~l~d~~~~~G~~~~~v~~~~k~G~~~vlDr~tG~~  345 (596)
T d1w6sa_         270 RPGDNKWTMTIFGRDADTGEAKFGYQKTPHDEW----DYAGVNVMMLSEQKDKDGKARKLLTHPDRNGIVYTLDRTDGAL  345 (596)
T ss_dssp             SCSCCTTSSEEEEEETTTCCEEEEEESSTTCSS----CCCCCCCCEEEEEECTTSCEEEEEEEECTTSEEEEEETTTCCE
T ss_pred             ccccccccccccccccccccccccccceecccc----CCccccceeeeeccccccccccceeccccccceeeecCCCCce
Confidence                   23477788999888876654322110    000001111111 12334   3567788899999999988876


Q ss_pred             ee
Q 021247          193 LH  194 (315)
Q Consensus       193 ~~  194 (315)
                      +.
T Consensus       346 i~  347 (596)
T d1w6sa_         346 VS  347 (596)
T ss_dssp             EE
T ss_pred             ee
Confidence            63

>d1h6la_ b.68.3.1 (A:) Thermostable phytase (3-phytase) {Bacillus amyloliquefaciens [TaxId: 1390]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Thermostable phytase (3-phytase)
family: Thermostable phytase (3-phytase)
domain: Thermostable phytase (3-phytase)
species: Bacillus amyloliquefaciens [TaxId: 1390]

Probab=96.90  E-value=0.065  Score=42.36  Aligned_cols=200  Identities=13%  Similarity=0.226  Sum_probs=113.9

Q ss_pred             EeecCCCCCcEEEEeeCCCcEEEEcCCCCcceeeccccccceEEEE------eCCCCCEEEEeeC--C--CeEEEEECCC
Q 021247           22 WVPATETRPALLLTGSLDETVKLWRPDDMQLERTNTGHCLGVVSVA------AHPSGIIAASASL--D--SFVRVFDVDT   91 (315)
Q Consensus        22 ~~~~~~~~~~~l~sgs~d~~v~~w~~~~~~~~~~~~~h~~~v~~~~------~~~~g~~l~s~~~--d--~~i~~w~~~~   91 (315)
                      |....+...++++.....+-|.+|+++. +.+..+.  .+.++.+.      +.....-++.++.  +  -+|.+|.+..
T Consensus        32 W~n~~~p~~SlI~gTdK~~Gl~vYdL~G-~~l~~~~--~Gr~NNVDvr~~~~l~~~~~di~vasnR~~~~~~l~~~~id~  108 (353)
T d1h6la_          32 WLDPKNPQNSKLITTNKKSGLAVYSLEG-KMLHSYH--TGKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDG  108 (353)
T ss_dssp             ECCSSCGGGCEEEEEETTSCCEEEETTC-CEEEECC--SSCEEEEEEEEEEEETTEEEEEEEEEECCTTTCEEEEEEEET
T ss_pred             EcCCCCcCccEEEEEcCcCCEEEEcCCC-cEEEecc--cCCcCccccccccccCCcceEEEEEeCCcCcceeEEEEEecC
Confidence            5444333456888888888899999864 4434332  12334333      2233333444442  2  2688888764


Q ss_pred             C-ceeEEeeCC-------cccEEEEEE--CCC-CCeEEEEecCCCeEEEEecCC---c----ceeeeecCCCCCCCCCCc
Q 021247           92 N-ASIATLEAS-------PSEVWQMQF--DPK-GTTLAVAGGGSASVKLWDTAT---W----NLIATLSIPRPEGLKPTD  153 (315)
Q Consensus        92 ~-~~~~~~~~~-------~~~v~~~~~--~~~-~~~~~~~~~~d~~i~~~d~~~---~----~~~~~~~~~~~~~~~~~~  153 (315)
                      . ..+..+...       ...+..+++  +|. +...++....+|.+..|.+..   +    +.+..+..+         
T Consensus       109 ~~~~l~~~~~~~~p~~~~~~~vYGlc~y~~~~~g~~~afv~~k~G~v~q~~l~~~~~g~v~~~lvr~f~~~---------  179 (353)
T d1h6la_         109 KNGTLQSITDPNRPIASAIDEVYGFSLYHSQKTGKYYAMVTGKEGEFEQYELNADKNGYISGKKVRAFKMN---------  179 (353)
T ss_dssp             TTTEEEECSCSSSCEECSSSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSSEEEEEEEEEECS---------
T ss_pred             cccccccccccccccccccCcceEEEEEecCCCCeEEEEEEcCCceEEEEEEEcCCCCceeeEeeeccCCC---------
Confidence            3 233333221       123556665  665 445566777889998887632   2    223333322         


Q ss_pred             cCCCCcceEEEEECCCCCEEEEecCCCcEEEEEccc-----ceeeeeecC--CccceEEEEEcC--C-CCcEEEEEeCCC
Q 021247          154 KSSSKKFVLSVAWSPDGRRIACGSMDGTISVFDVTR-----AKFLHHLEG--HFMPVRSLVYSP--V-DPRVLFSASDDT  223 (315)
Q Consensus       154 ~~~~~~~i~~~~~~~~~~~l~~~s~dg~i~i~d~~~-----~~~~~~~~~--~~~~v~~~~~~~--~-~~~~l~s~~~d~  223 (315)
                           ..+..|.+..+.+.|+.+-++..++.++...     ...+....+  ....+..++.-.  . .+.+++|...+.
T Consensus       180 -----~q~EGCVvDde~~~LyisEE~~Giw~~~a~~~~~~~~~~i~~~~g~~l~~D~EGlaiy~~~~~~GylivSsQG~n  254 (353)
T d1h6la_         180 -----SQTEGMAADDEYGSLYIAEEDEAIWKFSAEPDGGSNGTVIDRADGRHLTPDIEGLTIYYAADGKGYLLASSQGNS  254 (353)
T ss_dssp             -----SCEEEEEEETTTTEEEEEETTTEEEEEESSTTSCSCCEEEEECSSSSCCSCEEEEEEEECGGGCEEEEEEEGGGT
T ss_pred             -----CccceEEEeCCCCcEEEecCccceEEEEeccCCCccceeeecccCccccCCccccEEEEcCCCCeEEEEEcCCCC
Confidence                 1277899999989999998887777776542     222222222  234555565432  2 345666666789


Q ss_pred             eEEEEeCCCC-eeEEE
Q 021247          224 HVHMYDAEGK-SLVTA  238 (315)
Q Consensus       224 ~i~~wd~~~~-~~~~~  238 (315)
                      +..+||.+.. ..+..
T Consensus       255 ~f~vydr~~~~~~~g~  270 (353)
T d1h6la_         255 SYAIYERQGQNKYVAD  270 (353)
T ss_dssp             EEEEEESSTTCCEEEE
T ss_pred             eEEEEecCCCccccce
Confidence            9999998763 44433

>d2ad6a1 b.70.1.1 (A:1-571) Methanol dehydrogenase, heavy chain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Methanol dehydrogenase, heavy chain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=96.73  E-value=0.14  Score=43.58  Aligned_cols=159  Identities=9%  Similarity=0.086  Sum_probs=88.0

Q ss_pred             cEEEEeeCCCcEEEEcCCCCcceeeccc---cc-cceEEEEeCCCCCEEEEee-----CCCeEEEEECCCCceeEEeeCC
Q 021247           31 ALLLTGSLDETVKLWRPDDMQLERTNTG---HC-LGVVSVAAHPSGIIAASAS-----LDSFVRVFDVDTNASIATLEAS  101 (315)
Q Consensus        31 ~~l~sgs~d~~v~~w~~~~~~~~~~~~~---h~-~~v~~~~~~~~g~~l~s~~-----~d~~i~~w~~~~~~~~~~~~~~  101 (315)
                      ..++.++.|+.+.-.|.+++++.....-   +. ..+++--.-..+.+++..+     .+|.|+-+|+.+++.+..+...
T Consensus       116 ~~i~~~~~~g~l~alda~tG~~~w~~~~~~~~~~~~~t~~p~v~~~~vivg~~~~~~~~~G~v~a~D~~TG~~~W~~~t~  195 (571)
T d2ad6a1         116 GQIVKKQANGHLLALDAKTGKINWEVEVCDPKVGSTLTQAPFVAKDTVLMGCSGAELGVRGAVNAFDLKTGELKWRAFAT  195 (571)
T ss_dssp             TEEEEECTTSEEEEEETTTCCEEEEEECCCGGGTCBCCSCCEEETTEEEEECBCGGGTCCCEEEEEETTTCCEEEEEESS
T ss_pred             CeEEEEeCCCcEEeeehhhhhhhccccccccccccceeecCeEeCCeEEEeeccccccccCcEEEEECCCCcEEEEEecc
Confidence            3577888899988889888876543211   11 1111111112344444332     3788999999999988765432


Q ss_pred             c-------------------------------------ccEE-EEEECCCCCeEEEEecC---------------CCeEE
Q 021247          102 P-------------------------------------SEVW-QMQFDPKGTTLAVAGGG---------------SASVK  128 (315)
Q Consensus       102 ~-------------------------------------~~v~-~~~~~~~~~~~~~~~~~---------------d~~i~  128 (315)
                      +                                     ..+| ..+++|....+++..+.               ...+.
T Consensus       196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gg~vW~~~s~D~~~g~~y~~tg~~~p~~~~~r~g~n~~s~svv  275 (571)
T d2ad6a1         196 GSDDSVRLAKDFNSANPHYGQFGLGTKTWEGDAWKIGGGTNWGWYAYDPKLNLFYYGSGNPAPWNETMRPGDNKWTMTIW  275 (571)
T ss_dssp             SCHHHHTBCTTTTTTCGGGCCSSHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTTTEEE
T ss_pred             CCcccccccccccccccccCcccccccccCCcccccCCCccccccccchhcCeeeeecccccCcccccccccccccccee
Confidence            1                                     1122 24556665544433221               24577


Q ss_pred             EEecCCcceeeeecCCCCCCCCCCccCCCCcceEEEEECCCCC---EEEEecCCCcEEEEEcccceee
Q 021247          129 LWDTATWNLIATLSIPRPEGLKPTDKSSSKKFVLSVAWSPDGR---RIACGSMDGTISVFDVTRAKFL  193 (315)
Q Consensus       129 ~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~---~l~~~s~dg~i~i~d~~~~~~~  193 (315)
                      ..|.++++.+..+.......-. . ..........+..  +++   .++..+.+|.++++|..+++.+
T Consensus       276 Ald~~TG~~~W~~q~~~~D~Wd-~-D~~~~~~l~~~~~--~g~~~~~v~~~~k~G~l~vlDr~tG~~i  339 (571)
T d2ad6a1         276 GRDLDTGMAKWGYQKTPHDEWD-F-AGVNQMVLTDQPV--NGKMTPLLSHIDRNGILYTLNRENGNLI  339 (571)
T ss_dssp             EEETTTCCEEEEEESSTTCSSC-C-CCCCCCEEEEEEE--TTEEEEEEEEECTTSEEEEEETTTCCEE
T ss_pred             eeeccchhheecccccCccccc-c-ccccccceeeeec--cCccccceeeccccceEEEEecCCCcEe
Confidence            7888998888776542221100 0 0001111222322  343   4567889999999999888765

>d1kv9a2 b.70.1.1 (A:1-560) Quinoprotein alcohol dehydrogenase, N-terminal domain {Pseudomonas putida, hk5 [TaxId: 303]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Pseudomonas putida, hk5 [TaxId: 303]

Probab=96.19  E-value=0.29  Score=41.33  Aligned_cols=267  Identities=15%  Similarity=0.185  Sum_probs=137.5

Q ss_pred             EEEEeeCCCcEEEEcCCCCcceeecccccc-ceEEEEeCC---CCCEEEEe-----eCCCeEEEEECCCCceeEEeeCCc
Q 021247           32 LLLTGSLDETVKLWRPDDMQLERTNTGHCL-GVVSVAAHP---SGIIAASA-----SLDSFVRVFDVDTNASIATLEASP  102 (315)
Q Consensus        32 ~l~sgs~d~~v~~w~~~~~~~~~~~~~h~~-~v~~~~~~~---~g~~l~s~-----~~d~~i~~w~~~~~~~~~~~~~~~  102 (315)
                      .++.+..|+.|.-.|..++++......... ....+...|   ++..++-.     ...|.|+-+|.++++.+..+...+
T Consensus       119 ~v~~~~~~g~l~Alda~tG~~~w~~~~~~~~~~~~~~~~p~v~~~~vivg~~~~~~~~~G~v~a~D~~TG~~~W~~~t~~  198 (560)
T d1kv9a2         119 KVYVGTLDGRLIALDAKTGKAIWSQQTTDPAKPYSITGAPRVVKGKVIIGNGGAEYGVRGFVSAYDADTGKLAWRFYTVP  198 (560)
T ss_dssp             EEEEECTTSEEEEEETTTCCEEEEEECSCTTSSCBCCSCCEEETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSC
T ss_pred             eEEEEeCCCEEEEEECCCCcEEeccCccCcccceeeeeeeeeecCcccccccceeccccceEEEEECCCceEEeeeeecc
Confidence            578888889888888888776654321110 000011111   23333311     123679999999999887764211


Q ss_pred             ------------------------------ccEE-EEEECCCCCeEEEEecC------------------CCeEEEEecC
Q 021247          103 ------------------------------SEVW-QMQFDPKGTTLAVAGGG------------------SASVKLWDTA  133 (315)
Q Consensus       103 ------------------------------~~v~-~~~~~~~~~~~~~~~~~------------------d~~i~~~d~~  133 (315)
                                                    ..+| .++++|..+.+++..+.                  ...|...|.+
T Consensus       199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~W~~~s~D~~~~l~y~~tgn~~~~~~~~~~~~~g~n~~s~sivAld~~  278 (560)
T d1kv9a2         199 GDPALPYEHPELREAAKTWQGDQYWKLGGGGTVWDSMAYDPELDLLYVGTGNGSPWNREVRSPGGGDNLYLSSILAIRPD  278 (560)
T ss_dssp             CCTTSCCSSHHHHHHHTTCCSSCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTT
T ss_pred             ccccCCccccccccccccccccccccccCCCCcccccccccccCeeeecCCCCcccccccccccCCccccceeeEEecCC
Confidence                                          1122 34566666655442210                  2456677888


Q ss_pred             CcceeeeecCCCCCCCCCCccCCCCcceEEEEECCCC-CEEEEecCCCcEEEEEcccceeeeeecCCc-c----------
Q 021247          134 TWNLIATLSIPRPEGLKPTDKSSSKKFVLSVAWSPDG-RRIACGSMDGTISVFDVTRAKFLHHLEGHF-M----------  201 (315)
Q Consensus       134 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~l~~~s~dg~i~i~d~~~~~~~~~~~~~~-~----------  201 (315)
                      +++....+.......-. . ..........+...-.. ..++.+..+|.++++|..+++++....... .          
T Consensus       279 tG~~~W~~Q~~~~D~wd-~-d~~~~~~l~~~~~~g~~~~~v~~~~k~G~~~~lDr~tG~~i~~~~~~~~~~~~~~d~~~~  356 (560)
T d1kv9a2         279 TGKLAWHYQVTPGDSWD-F-TATQQITLAELNIDGKPRKVLMQAPKNGFFYVLDRTNGKLISAEKFGKVTWAEKVDLATG  356 (560)
T ss_dssp             TCCEEEEEESSTTCCSC-C-CCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCCSEEEECTTTC
T ss_pred             ccceeEEEecccccccc-c-cccceeeeeeeecCCceeeeeeecCccceEEEEecCCCcccccccccccccccccChhhc
Confidence            88887666432221100 0 00111112233332211 356778899999999999888764321100 0          


Q ss_pred             -------------c------------eEEEEEcCCCCcEEEEEeC-----------------------------------
Q 021247          202 -------------P------------VRSLVYSPVDPRVLFSASD-----------------------------------  221 (315)
Q Consensus       202 -------------~------------v~~~~~~~~~~~~l~s~~~-----------------------------------  221 (315)
                                   .            -...+++|....+++....                                   
T Consensus       357 ~~~~~~~~~~~~~~~~~~p~~~Gg~~w~~~a~dp~~~~~yvp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~  436 (560)
T d1kv9a2         357 RPVEAPGVRYEKEPIVMWPSPFGAHNWHSMSFNPGTGLVYIPYQEVPGVYRNEGKDFVTRKAFNTAAGFADATDVPAAVV  436 (560)
T ss_dssp             CEEECTTTTCSSSCEEESSCTTCSSCSSCCEEETTTTEEEEEEEECCEEECCCGGGCCCCSSCCCSSCGGGCCCCCGGGC
T ss_pred             cccccccccccccceeeeeccccccccccccccCCCCeeecccccccceeeccccccccccccccccCcccccCCCCccc
Confidence                         0            0122344433222222211                                   


Q ss_pred             CCeEEEEeCCCCeeEEEeecccccEEEEEEcCCCCeEEEEeCCCcEEEEecCccceehccccccc-ceEEEEEeeCCC-E
Q 021247          222 DTHVHMYDAEGKSLVTAMSGHASWVLSVDASPDGAAITTGSSDRTVKLWDLNMRAAMQSMTNHTD-QVWGVSFRPLGG-R  299 (315)
Q Consensus       222 d~~i~~wd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~-~v~~~~~s~~~~-~  299 (315)
                      .+.|.-+|+.+++.+=+.... ....+-.+.-.+.++++|+.||.++.+|.++++.+=++..... .-.=+.+..+|+ |
T Consensus       437 ~G~l~A~D~~tGk~~W~~~~~-~~~~gg~l~TagglVF~G~~dg~l~A~Da~tGe~LW~~~l~~~~~~~P~ty~~dGkqy  515 (560)
T d1kv9a2         437 SGALLAWDPVKQKAAWKVPYP-THWNGGTLSTAGNLVFQGTAAGQMHAYSADKGEALWQFEAQSGIVAAPMTFELAGRQY  515 (560)
T ss_dssp             EEEEEEEETTTTEEEEEEEES-SSCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEE
T ss_pred             ccceEEEeCCCCeEeeeccCC-CCCCCceeEECCCEEEEECCCCcEEEEECCCCcEeEEEECCCCccccCEEEEECCEEE
Confidence            245667777777655333211 1111111222456788899999999999999988744432111 111145667886 4


Q ss_pred             EE
Q 021247          300 VV  301 (315)
Q Consensus       300 l~  301 (315)
                      |+
T Consensus       516 v~  517 (560)
T d1kv9a2         516 VA  517 (560)
T ss_dssp             EE
T ss_pred             EE
Confidence            44

>d1w6sa_ b.70.1.1 (A:) Methanol dehydrogenase, heavy chain {Methylobacterium extorquens [TaxId: 408]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Methanol dehydrogenase, heavy chain
species: Methylobacterium extorquens [TaxId: 408]

Probab=95.66  E-value=0.53  Score=40.02  Aligned_cols=206  Identities=15%  Similarity=0.073  Sum_probs=107.8

Q ss_pred             EEE-EeeCCCcEEEEcC-CCCcceeecccc----ccc------e-EEEEeCC----CCCEEEEeeCCCeEEEEECCCCce
Q 021247           32 LLL-TGSLDETVKLWRP-DDMQLERTNTGH----CLG------V-VSVAAHP----SGIIAASASLDSFVRVFDVDTNAS   94 (315)
Q Consensus        32 ~l~-sgs~d~~v~~w~~-~~~~~~~~~~~h----~~~------v-~~~~~~~----~g~~l~s~~~d~~i~~w~~~~~~~   94 (315)
                      .|+ +++.++.|...+. ++++++..+...    ...      + +.+.+.+    .+.+++.++.|+.|.-.|.++++.
T Consensus        64 ~ly~~t~~~~~v~a~d~~~tG~~~W~~~~~~~~~~~~~~~~~~~~RGv~~~~~~~~~~~~v~~~t~dg~l~Alda~tG~~  143 (596)
T d1w6sa_          64 KMYIHTSFPNNTFALGLDDPGTILWQDKPKQNPAARAVACCDLVNRGLAYWPGDGKTPALILKTQLDGNVAALNAETGET  143 (596)
T ss_dssp             EEEEECSTTTCEEEEETTCTTSEEEEECCCCCGGGGGGCSSCSCCCCCEEECCCSSSCCEEEEECTTSEEEEEETTTCCE
T ss_pred             EEEEeeCCCCcEEEEeCCCCCCEEEEecCCCCcccccccccccccceeEEecCCCCCceEEEEEeCCCCeEeeccccCce
Confidence            444 4555677777775 466665543210    000      0 1222222    234688889999999999999998


Q ss_pred             eEEeeCCcccE-EEEEECC--CCCeEEEEec-----CCCeEEEEecCCcceeeeecCCCCCCC------------CC---
Q 021247           95 IATLEASPSEV-WQMQFDP--KGTTLAVAGG-----GSASVKLWDTATWNLIATLSIPRPEGL------------KP---  151 (315)
Q Consensus        95 ~~~~~~~~~~v-~~~~~~~--~~~~~~~~~~-----~d~~i~~~d~~~~~~~~~~~~~~~~~~------------~~---  151 (315)
                      +..+....... ..+.-.|  -+..+++..+     ..|.|+-+|.++++++.++....+...            ..   
T Consensus       144 ~w~~~~~d~~~~~~~t~~P~v~~~~vivg~~~~e~~~~G~v~A~Da~TG~~~W~~~t~~~~~~~~~~~~~~~~~~~~g~~  223 (596)
T d1w6sa_         144 VWKVENSDIKVGSTLTIAPYVVKDKVIIGSSGAELGVRGYLTAYDVKTGEQVWRAYATGPDKDLLLASDFNIKNPHYGQK  223 (596)
T ss_dssp             EEEEECCCGGGTCBCCSCCEEETTEEEECCBCGGGTCCCEEEEEETTTCCEEEEEESSSCHHHHTBCTTTTTTCGGGCCT
T ss_pred             eccccccccccccccccCCcEECCeEEEeeccccccccCceEEEECCCCcEEEEeeccCCcccccccccccccccccccc
Confidence            87664321100 0000001  0223333221     248899999999999987653221000            00   


Q ss_pred             ----------CccCCCCcceEEEEECCCCCEEEEecC----------------CCcEEEEEcccceeeeeecC--Cc---
Q 021247          152 ----------TDKSSSKKFVLSVAWSPDGRRIACGSM----------------DGTISVFDVTRAKFLHHLEG--HF---  200 (315)
Q Consensus       152 ----------~~~~~~~~~i~~~~~~~~~~~l~~~s~----------------dg~i~i~d~~~~~~~~~~~~--~~---  200 (315)
                                .........-..+++.+..+.+..+..                ...+.-.|+.+++.+-.++.  |.   
T Consensus       224 ~~~~~tw~g~~~~~gg~~~W~~~s~D~~~~lvy~~tg~~~p~~~~~r~g~n~ys~sivAlD~~TG~~~W~~Q~~~~D~Wd  303 (596)
T d1w6sa_         224 GLGTGTWEGDAWKIGGGTNWGWYAYDPGTNLIYFGTGNPAPWNETMRPGDNKWTMTIFGRDADTGEAKFGYQKTPHDEWD  303 (596)
T ss_dssp             THHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTSSEEEEEETTTCCEEEEEESSTTCSSC
T ss_pred             ccccccCCCCceecCCCccccccccccCCCeeecccccccccccccccccccccccccccccccccccccccceeccccC
Confidence                      000000001123455666665554432                23477889998887654432  21   


Q ss_pred             ----cceEEEEEc-CCC--CcEEEEEeCCCeEEEEeCCCCeeEE
Q 021247          201 ----MPVRSLVYS-PVD--PRVLFSASDDTHVHMYDAEGKSLVT  237 (315)
Q Consensus       201 ----~~v~~~~~~-~~~--~~~l~s~~~d~~i~~wd~~~~~~~~  237 (315)
                          .....+..- ..+  ...++....+|.+.++|.++++++.
T Consensus       304 ~d~~~~~~l~d~~~~~G~~~~~v~~~~k~G~~~vlDr~tG~~i~  347 (596)
T d1w6sa_         304 YAGVNVMMLSEQKDKDGKARKLLTHPDRNGIVYTLDRTDGALVS  347 (596)
T ss_dssp             CCCCCCCEEEEEECTTSCEEEEEEEECTTSEEEEEETTTCCEEE
T ss_pred             CccccceeeeeccccccccccceeccccccceeeecCCCCceee
Confidence                112222211 111  2367788889999999998887664

>d1flga_ b.70.1.1 (A:) Ethanol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Ethanol dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=94.61  E-value=1.1  Score=37.86  Aligned_cols=110  Identities=14%  Similarity=0.019  Sum_probs=64.1

Q ss_pred             cEEEEeeCCCcEEEEcCCCCcceeeccccc--------cce-EEEEeCCCCCEEEEeeCCCeEEEEECCCCceeEEeeCC
Q 021247           31 ALLLTGSLDETVKLWRPDDMQLERTNTGHC--------LGV-VSVAAHPSGIIAASASLDSFVRVFDVDTNASIATLEAS  101 (315)
Q Consensus        31 ~~l~sgs~d~~v~~w~~~~~~~~~~~~~h~--------~~v-~~~~~~~~g~~l~s~~~d~~i~~w~~~~~~~~~~~~~~  101 (315)
                      ..++.++.++.|.-.|.++++++..+....        ..+ ..+..  .+..++.++.|+.+.-.|..+++.+......
T Consensus        69 g~vy~~t~~~~v~AlDa~TG~~lW~~~~~~~~~~~~~~~~~~rg~a~--~~~~i~~~t~~~~l~alda~tG~~~W~~~~~  146 (582)
T d1flga_          69 GVIYVTASYSRLFALDAKTGKRLWTYNHRLPDDIRPCCDVVNRGAAI--YGDKVFFGTLDASVVALNKNTGKVVWKKKFA  146 (582)
T ss_dssp             TEEEEEETTTEEEEEESSSCCEEEEEECCCCTTCCCSSCSCCCCCEE--ETTEEEEEETTTEEEEEESSSCCEEEEEECS
T ss_pred             CEEEEeCCCCeEEEEeCCCCCeEEEEcCCCCCccccccccccCCceE--eCCceEEecCCCeEEEecccccceeeeeccc
Confidence            478888999999999998888765532110        000 01111  1345666888999999999999876543221


Q ss_pred             c---------ccEEEEEECCCCCeEEEEe------cCCCeEEEEecCCcceeeeecC
Q 021247          102 P---------SEVWQMQFDPKGTTLAVAG------GGSASVKLWDTATWNLIATLSI  143 (315)
Q Consensus       102 ~---------~~v~~~~~~~~~~~~~~~~------~~d~~i~~~d~~~~~~~~~~~~  143 (315)
                      .         .++. ..--.....+++.+      ...+.|.-+|.++++.+.++..
T Consensus       147 ~~~~~~~~~~~p~~-~~~~~~~~~~~i~g~~~~~~~~~g~v~a~d~~tG~~~W~~~~  202 (582)
T d1flga_         147 DHGAGYTMTGAPTI-VKDGKTGKVLLIHGSSGDEFGVVGRLFARDPDTGEEIWMRPF  202 (582)
T ss_dssp             CGGGTCBCCSCCEE-EECTTTCCEEEEECCBCGGGCCBCEEEEECTTTCCEEEEEES
T ss_pred             CCCccceeecCceE-ecCCcEeEEEEEeCccccccccccceEEecCCCCcEEEEEec
Confidence            1         1111 00001122233322      2346788899999998877643

>d1kb0a2 b.70.1.1 (A:1-573) Quinoprotein alcohol dehydrogenase, N-terminal domain {Comamonas testosteroni [TaxId: 285]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Comamonas testosteroni [TaxId: 285]

Probab=94.55  E-value=1.1  Score=37.71  Aligned_cols=42  Identities=10%  Similarity=0.178  Sum_probs=30.9

Q ss_pred             CCCeEEEEeCCCcEEEEecCccceehccccc----ccceEEEEEeeCCC
Q 021247          254 DGAAITTGSSDRTVKLWDLNMRAAMQSMTNH----TDQVWGVSFRPLGG  298 (315)
Q Consensus       254 ~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~----~~~v~~~~~s~~~~  298 (315)
                      .+.+|++|+.||.++.+|.++++.+=++...    ..+   +.|..+|+
T Consensus       487 agglVF~G~~dg~l~A~Da~TGe~LW~~~~~~~~~~~P---~ty~~~Gk  532 (573)
T d1kb0a2         487 AGNVVFQGTADGRLVAYHAATGEKLWEAPTGTGVVAAP---STYMVDGR  532 (573)
T ss_dssp             TTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCC---EEEEETTE
T ss_pred             cCCEEEEECCCCeEEEEECCCCcEeEEEECCCCccccC---EEEEECCE
Confidence            5668888999999999999999887544322    223   45677886

>d2hu7a1 b.69.7.2 (A:9-321) Acylamino-acid-releasing enzyme, N-terminal donain {Aeropyrum pernix [TaxId: 56636]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Peptidase/esterase 'gauge' domain
family: Acylamino-acid-releasing enzyme, N-terminal donain
domain: Acylamino-acid-releasing enzyme, N-terminal donain
species: Aeropyrum pernix [TaxId: 56636]

Probab=94.54  E-value=0.53  Score=33.88  Aligned_cols=219  Identities=14%  Similarity=0.162  Sum_probs=111.0

Q ss_pred             cEEEEeeCCCcEEEEcCCCCcceeeccccccceEEE-EeCCCCCEE-EE-----eeCCCeEEEEECCCCceeEEeeCCc-
Q 021247           31 ALLLTGSLDETVKLWRPDDMQLERTNTGHCLGVVSV-AAHPSGIIA-AS-----ASLDSFVRVFDVDTNASIATLEASP-  102 (315)
Q Consensus        31 ~~l~sgs~d~~v~~w~~~~~~~~~~~~~h~~~v~~~-~~~~~g~~l-~s-----~~~d~~i~~w~~~~~~~~~~~~~~~-  102 (315)
                      .+++.+-..|.+.++-+...+..+..+.   +|... ...+.=..+ ..     |..-..|++-|+........+.... 
T Consensus        27 ~ll~~~~seG~vni~~l~g~~~vkLtke---PI~~~~~Pk~~ldfi~f~RDV~kGkE~Hai~~~Nlk~~GEE~~i~spk~  103 (313)
T d2hu7a1          27 KLLVVGFSEGSVNAYLYDGGETVKLNRE---PINSVLDPHYGVGRVILVRDVSKGAEQHALFKVNTSRPGEEQRLEAVKP  103 (313)
T ss_dssp             EEEEEEEETTEEEEEEESSSSCEECCSS---CCSEECEECTTBSEEEEEEECSTTSCCEEEEEEETTSTTCEEECTTSCS
T ss_pred             cEEEEEeccceEEEEEEeCCEEEEEecc---cccCcCCCccCcceEEEEeehhcCcceeeEEEEccCCCCeeeEecCCce
Confidence            4788888899998887776665554322   11111 111111111 11     1222345555555322223333221 


Q ss_pred             ccEEEEEECCCCCeEEEEecCCCeEEEEecCCcceeeeecCCCCCCCCCCccCCCCcceEEEEEC-CCCCEEEEecC-CC
Q 021247          103 SEVWQMQFDPKGTTLAVAGGGSASVKLWDTATWNLIATLSIPRPEGLKPTDKSSSKKFVLSVAWS-PDGRRIACGSM-DG  180 (315)
Q Consensus       103 ~~v~~~~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~~~l~~~s~-dg  180 (315)
                      -.|.++++  +++.++++|+......+|-+..+++.....+|.-. +  . ..-..+.|..+.+- +...-|+.+.. .|
T Consensus       104 vRI~S~~y--ddk~vvF~Gased~~~LYviegGklrkL~~vPpFs-F--V-tDI~~d~I~G~g~~~g~~~sfF~adl~SG  177 (313)
T d2hu7a1         104 MRILSGVD--TGEAVVFTGATEDRVALYALDGGGLRELARLPGFG-F--V-SDIRGDLIAGLGFFGGGRVSLFTSNLSSG  177 (313)
T ss_dssp             BEEEEEEE--CSSCEEEEEECSSCEEEEEEETTEEEEEEEESSCE-E--E-EEEETTEEEEEEEEETTEEEEEEEETTTE
T ss_pred             EEEEEeee--cCceEEEecccCCceEEEEEeCCceeeeccCCCcc-e--E-EeccCCeEEEEeeecCCcceEEEEecccC
Confidence            34556555  45668888888888899988888776555443210 0  0 00112234444442 22222333333 56


Q ss_pred             cEEEEEcccceeeeeecCCccceEEEEEcCCCCcEEEEEeC---CCeEEEEeCCCCeeEEE-eec------ccccEEEEE
Q 021247          181 TISVFDVTRAKFLHHLEGHFMPVRSLVYSPVDPRVLFSASD---DTHVHMYDAEGKSLVTA-MSG------HASWVLSVD  250 (315)
Q Consensus       181 ~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~---d~~i~~wd~~~~~~~~~-~~~------~~~~i~~~~  250 (315)
                      .+++++...+..           +.....+ +.+ +++.-.   +....-+|.+.++.-.. +..      ..-.|+=+-
T Consensus       178 ~lri~tpkeGS~-----------~~ay~~~-gnK-V~sdyEt~gEsywit~D~~s~~yerve~P~kd~~sy~p~~I~~~~  244 (313)
T d2hu7a1         178 GLRVFDSGEGSF-----------SSASISP-GMK-VTAGLETAREARLVTVDPRDGSVEDLELPSKDFSSYRPTAITWLG  244 (313)
T ss_dssp             EEEEECCSSEEE-----------EEEEECT-TSC-EEEEEEESSCEEEEEECTTTCCEEECCCSSCHHHHHCCSEEEEEE
T ss_pred             CEEEecCCCCcc-----------cceeEcc-Cce-eeeccCCCCceEEEEEecccCceeeeecCcccceeecceEEEeee
Confidence            666666554433           3333333 111 222211   12222457665543221 111      123455567


Q ss_pred             EcCCCCeEEEEeCCCcEEEEe
Q 021247          251 ASPDGAAITTGSSDRTVKLWD  271 (315)
Q Consensus       251 ~~~~~~~l~s~~~d~~i~iwd  271 (315)
                      +.|++++++.+-.||.-++|.
T Consensus       245 Y~Pdd~L~iiakrdG~s~lF~  265 (313)
T d2hu7a1         245 YLPDGRLAVVARREGRSAVFI  265 (313)
T ss_dssp             ECTTSCEEEEEEETTEEEEEE
T ss_pred             eCCCCcEEEEEecCCchheee
Confidence            999999989999999999996

>d1v04a_ b.68.6.2 (A:) Serum paraoxonase/arylesterase 1, PON1 {Rabit (Oryctolagus cuniculus) [TaxId: 9986]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: Serum paraoxonase/arylesterase 1, PON1
domain: Serum paraoxonase/arylesterase 1, PON1
species: Rabit (Oryctolagus cuniculus) [TaxId: 9986]

Probab=94.09  E-value=0.98  Score=35.23  Aligned_cols=151  Identities=15%  Similarity=0.153  Sum_probs=83.8

Q ss_pred             EEEECCCCCEEEEecC------------CCcEEEEEcccceee-eee--cCC-----ccceEEEEE--cCCCCcEEEEEe
Q 021247          163 SVAWSPDGRRIACGSM------------DGTISVFDVTRAKFL-HHL--EGH-----FMPVRSLVY--SPVDPRVLFSAS  220 (315)
Q Consensus       163 ~~~~~~~~~~l~~~s~------------dg~i~i~d~~~~~~~-~~~--~~~-----~~~v~~~~~--~~~~~~~l~s~~  220 (315)
                      .+...|+|..+++++.            .|.|.++|+.+.+.. ..+  .+.     ......+..  .+++..+|+...
T Consensus        39 Di~~~~dg~~~issg~~~~~~~~~~~~~~G~i~~~dl~~~~~~~~~l~~~~~~~~~~~f~PhGi~l~~~~dg~~~L~vvn  118 (340)
T d1v04a_          39 DLEILPNGLAFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPAVSELEIIGNTLDISSFNPHGISTFIDDDNTVYLLVVN  118 (340)
T ss_dssp             EEEECTTSEEEEEECCCC--------CCCCEEEEEETTSSSCCEEECEEECSSSCGGGCCEEEEEEEECTTCCEEEEEEE
T ss_pred             eEEECCCCcEEEEecCccCCCCCCCCCCCCeEEEEecCCCCCcceEEEecCCCCCCcceeccceeEEEcCCCcEEEEEEe
Confidence            5677788877766542            488999998654321 111  111     112233333  232333455543


Q ss_pred             ---CCCeEEEEeCCC--CeeEE--Eee-cccccEEEEEEcCCCCeEEEEeC---------------CCcEEEEecCccce
Q 021247          221 ---DDTHVHMYDAEG--KSLVT--AMS-GHASWVLSVDASPDGAAITTGSS---------------DRTVKLWDLNMRAA  277 (315)
Q Consensus       221 ---~d~~i~~wd~~~--~~~~~--~~~-~~~~~i~~~~~~~~~~~l~s~~~---------------d~~i~iwd~~~~~~  277 (315)
                         ...+|-+|++..  .++..  .+. ......+++++..++.+++|-..               -....+|..+.++.
T Consensus       119 H~~~~~~ieif~~~~~~~~l~~~~~v~~~~~~~pNDv~~~~~g~fy~Tnd~~~~~~~~~~~e~~~~~~~g~v~~~~~~~~  198 (340)
T d1v04a_         119 HPGSSSTVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTYYSPNDV  198 (340)
T ss_dssp             CSTTCCEEEEEEEETTTTEEEEEEEECCTTCSSEEEEEEEETTEEEEEESCSCCSHHHHHHHHHTTCCCEEEEEECSSCE
T ss_pred             ccCCCceeEEEEEeCCCCeEEEEeecCCccccCccceEEecCCCEEEecCccCcChhhhhhhHhhcCCceeEEEEcCCce
Confidence               345677777642  22221  121 22345788999888888888321               12233443333322


Q ss_pred             ehcccccccceEEEEEeeCCCEE-EEEeCCCcEEEeec
Q 021247          278 MQSMTNHTDQVWGVSFRPLGGRV-VSVSDDKSISLYEY  314 (315)
Q Consensus       278 ~~~~~~~~~~v~~~~~s~~~~~l-~s~~~d~~i~i~~~  314 (315)
                      . .....-...+.++++|++++| ++-...++|++|++
T Consensus       199 ~-~~~~~l~~pNGI~~s~d~~~lyVa~t~~~~i~~y~~  235 (340)
T d1v04a_         199 R-VVAEGFDFANGINISPDGKYVYIAELLAHKIHVYEK  235 (340)
T ss_dssp             E-EEEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEE
T ss_pred             E-EEcCCCCccceeEECCCCCEEEEEeCCCCeEEEEEe
Confidence            2 222223467899999999877 56667789998876

>d1crua_ b.68.2.1 (A:) Soluble quinoprotein glucose dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Soluble quinoprotein glucose dehydrogenase
family: Soluble quinoprotein glucose dehydrogenase
domain: Soluble quinoprotein glucose dehydrogenase
species: Acinetobacter calcoaceticus [TaxId: 471]

Probab=93.09  E-value=1.8  Score=35.14  Aligned_cols=52  Identities=12%  Similarity=0.180  Sum_probs=36.8

Q ss_pred             ceEEEEECCCCCEEEEecCCCcEEEEEcccceee--eeec------CCccceEEEEEcCC
Q 021247          160 FVLSVAWSPDGRRIACGSMDGTISVFDVTRAKFL--HHLE------GHFMPVRSLVYSPV  211 (315)
Q Consensus       160 ~i~~~~~~~~~~~l~~~s~dg~i~i~d~~~~~~~--~~~~------~~~~~v~~~~~~~~  211 (315)
                      ...+|+|.|+|+.|++--..|.|++++..+++..  ..+.      .-+.....|+|+|+
T Consensus        28 ~P~~la~~pdg~llVter~~G~i~~v~~~~g~~~~i~~~~~~~~~~~ge~GLLgia~~Pd   87 (450)
T d1crua_          28 KPHALLWGPDNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPD   87 (450)
T ss_dssp             SEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTT
T ss_pred             CceEEEEeCCCeEEEEEecCCEEEEEECCCCcEeecccCCccccccCCCCceeeEEeCCC
Confidence            3679999999998887756799999987766432  2221      12345678999984

>d1qfma1 b.69.7.1 (A:1-430) Prolyl oligopeptidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Peptidase/esterase 'gauge' domain
family: Prolyl oligopeptidase, N-terminal domain
domain: Prolyl oligopeptidase, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=93.04  E-value=1.7  Score=34.86  Aligned_cols=230  Identities=15%  Similarity=0.088  Sum_probs=109.8

Q ss_pred             ccccceEEEEeCCCCCEEE-EeeCC----CeEEEEECCCCceeE-EeeCCcccEEEEEECCCCCeEEEEecC--------
Q 021247           58 GHCLGVVSVAAHPSGIIAA-SASLD----SFVRVFDVDTNASIA-TLEASPSEVWQMQFDPKGTTLAVAGGG--------  123 (315)
Q Consensus        58 ~h~~~v~~~~~~~~g~~l~-s~~~d----~~i~~w~~~~~~~~~-~~~~~~~~v~~~~~~~~~~~~~~~~~~--------  123 (315)
                      ++.-.+...+++|++++++ +-+..    ..+++.|+.+++.+. .+..  .....+.|.+++..++.+.-.        
T Consensus       122 ~~~~~~~~~~~Spd~~~la~s~d~~G~e~~~l~v~Dl~tg~~~~~~i~~--~~~~~~~W~~D~~~~~Y~~~~~~~~~~~~  199 (430)
T d1qfma1         122 DGTVALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPDVLER--VKFSCMAWTHDGKGMFYNAYPQQDGKSDG  199 (430)
T ss_dssp             SSCEEEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEEEEEE--ECSCCEEECTTSSEEEEEECCCCSSCCSS
T ss_pred             cccceecceEecCCCCEEEEEeccccCchheeEEeccCcceeccccccc--ccccceEEcCCCCEEEEEEeccccCcccc
Confidence            3334455678899998877 33333    459999999998654 2221  112457899998877765421        


Q ss_pred             -------CCeEEEEecCCcceeeeecCCCCCCCCCCccCCCCcceEEEEECCCCCEEEEec---CCCc--EEEEEcccce
Q 021247          124 -------SASVKLWDTATWNLIATLSIPRPEGLKPTDKSSSKKFVLSVAWSPDGRRIACGS---MDGT--ISVFDVTRAK  191 (315)
Q Consensus       124 -------d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~s---~dg~--i~i~d~~~~~  191 (315)
                             ...+..+.+.+...-..+....         .....++..+..++++++++...   .+..  +.+.|+....
T Consensus       200 ~~~~~~~~~~v~~h~lgt~~~~d~~v~~e---------~d~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~~~~~d~~~~~  270 (430)
T d1qfma1         200 TETSTNLHQKLYYHVLGTDQSEDILCAEF---------PDEPKWMGGAELSDDGRYVLLSIREGCDPVNRLWYCDLQQES  270 (430)
T ss_dssp             SCCCCCCCCEEEEEETTSCGGGCEEEECC---------TTCTTCEEEEEECTTSCEEEEEEECSSSSCCEEEEEEGGGSS
T ss_pred             cccccCCcceEEEEECCCCcccccccccc---------ccCCceEEeeeccCCcceeeEEeeccCCccEEEEEeeCCCcc
Confidence                   1246666655432111111111         11123466777889998876432   2333  4455554321


Q ss_pred             e--------eeeecCCccceEEEEEcCCCCcEEEEEeC---CCeEEEEeCCCCe--eEEEe-ecccccEEEEEEcCCCCe
Q 021247          192 F--------LHHLEGHFMPVRSLVYSPVDPRVLFSASD---DTHVHMYDAEGKS--LVTAM-SGHASWVLSVDASPDGAA  257 (315)
Q Consensus       192 ~--------~~~~~~~~~~v~~~~~~~~~~~~l~s~~~---d~~i~~wd~~~~~--~~~~~-~~~~~~i~~~~~~~~~~~  257 (315)
                      .        .............+. + .+..+++....   ++.|...++....  ....+ ..+...+..-.+...+.+
T Consensus       271 ~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~~~~Tn~~a~~~~L~~~~~~~~~~~~w~~vi~~~~~~~~~~~~~~~~~~  348 (430)
T d1qfma1         271 NGITGILKWVKLIDNFEGEYDYVT-N-EGTVFTFKTNRHSPNYRLINIDFTDPEESKWKVLVPEHEKDVLEWVACVRSNF  348 (430)
T ss_dssp             SSSCSSCCCEEEECSSSSCEEEEE-E-ETTEEEEEECTTCTTCEEEEEETTBCCGGGCEEEECCCSSCEEEEEEEETTTE
T ss_pred             cccccccceeEeecccccceEEEe-c-CCceeecccCcccccceeEEecCCCCccccceEEecccCcceeeeEEEEECCE
Confidence            1        111111111222221 1 13333333322   3556666655321  11222 233333433333333444


Q ss_pred             EE-EEeCCC--cEEEEecCccceehcccccccceEEEEEeeCCCEE
Q 021247          258 IT-TGSSDR--TVKLWDLNMRAAMQSMTNHTDQVWGVSFRPLGGRV  300 (315)
Q Consensus       258 l~-s~~~d~--~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l  300 (315)
                      |+ +--.|+  .|+++++..++...........+..+...++...+
T Consensus       349 lvl~~~~~~~~~l~v~~~~~~~~~~~~~~~~~sv~~~~~~~~~~~~  394 (430)
T d1qfma1         349 LVLCYLHDVKNTLQLHDLATGALLKIFPLEVGSVVGYSGQKKDTEI  394 (430)
T ss_dssp             EEEEEEETTEEEEEEEETTTCCEEEEECCCSSEEEEEECCTTCSEE
T ss_pred             EEEEEEcCCEeEEEEEECCCCcEEEecCCCCceEeeccCCCCCCEE
Confidence            44 444554  47888888765544333333445444444444433

>d1zgka1 b.68.11.1 (A:322-609) Kelch-like ECH-associated protein 1, KEAP1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Kelch motif
family: Kelch motif
domain: Kelch-like ECH-associated protein 1, KEAP1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.01  E-value=1.3  Score=33.09  Aligned_cols=20  Identities=20%  Similarity=0.129  Sum_probs=12.4

Q ss_pred             eCCCEEEEEeCCCc-----EEEeec
Q 021247          295 PLGGRVVSVSDDKS-----ISLYEY  314 (315)
Q Consensus       295 ~~~~~l~s~~~d~~-----i~i~~~  314 (315)
                      .+++.++.||.++.     |.+||+
T Consensus       241 ~~~~l~v~GG~~~~~~~~~v~~yd~  265 (288)
T d1zgka1         241 HQGRIYVLGGYDGHTFLDSVECYDP  265 (288)
T ss_dssp             ETTEEEEECCBCSSCBCCEEEEEET
T ss_pred             ECCEEEEEecCCCCeecceEEEEEC
Confidence            36667777776543     566664

>d1qfma1 b.69.7.1 (A:1-430) Prolyl oligopeptidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Peptidase/esterase 'gauge' domain
family: Prolyl oligopeptidase, N-terminal domain
domain: Prolyl oligopeptidase, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=91.24  E-value=2.9  Score=33.46  Aligned_cols=256  Identities=13%  Similarity=-0.006  Sum_probs=119.7

Q ss_pred             hhccccceEEEEEeecCCCCCcEEEEeeCCC----cEEEEcCCCCcceeeccccccceEEEEeCCCCCEEEEeeCC----
Q 021247           10 ENAHEESVWAVTWVPATETRPALLLTGSLDE----TVKLWRPDDMQLERTNTGHCLGVVSVAAHPSGIIAASASLD----   81 (315)
Q Consensus        10 ~~~h~~~v~~v~~~~~~~~~~~~l~sgs~d~----~v~~w~~~~~~~~~~~~~h~~~v~~~~~~~~g~~l~s~~~d----   81 (315)
                      +.++.-.+-+.+++|+++   -++++-+.+|    .++++|+.+++........ .....+.|.+++..|+-...|    
T Consensus       120 a~~~~~~~~~~~~Spd~~---~la~s~d~~G~e~~~l~v~Dl~tg~~~~~~i~~-~~~~~~~W~~D~~~~~Y~~~~~~~~  195 (430)
T d1qfma1         120 SDDGTVALRGYAFSEDGE---YFAYGLSASGSDWVTIKFMKVDGAKELPDVLER-VKFSCMAWTHDGKGMFYNAYPQQDG  195 (430)
T ss_dssp             CSSSCEEEEEEEECTTSS---EEEEEEEETTCSCEEEEEEETTTTEEEEEEEEE-ECSCCEEECTTSSEEEEEECCCCSS
T ss_pred             cccccceecceEecCCCC---EEEEEeccccCchheeEEeccCcceeccccccc-ccccceEEcCCCCEEEEEEeccccC
Confidence            344443444555666553   2444555444    5899999988764421111 112467899999876533222    


Q ss_pred             ------------CeEEEEECCCCce--eEEeeCCc--ccEEEEEECCCCCeEEEEec--CCCeEEE--EecCCcceeeee
Q 021247           82 ------------SFVRVFDVDTNAS--IATLEASP--SEVWQMQFDPKGTTLAVAGG--GSASVKL--WDTATWNLIATL  141 (315)
Q Consensus        82 ------------~~i~~w~~~~~~~--~~~~~~~~--~~v~~~~~~~~~~~~~~~~~--~d~~i~~--~d~~~~~~~~~~  141 (315)
                                  ..++.+.+.+...  ...+....  ..+..+..+++++++++...  .+....+  .|+......  .
T Consensus       196 ~~~~~~~~~~~~~~v~~h~lgt~~~~d~~v~~e~d~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~~~~~d~~~~~~~--~  273 (430)
T d1qfma1         196 KSDGTETSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSDDGRYVLLSIREGCDPVNRLWYCDLQQESNG--I  273 (430)
T ss_dssp             CCSSSCCCCCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECSSSSCCEEEEEEGGGSSSS--S
T ss_pred             cccccccccCCcceEEEEECCCCccccccccccccCCceEEeeeccCCcceeeEEeeccCCccEEEEEeeCCCcccc--c
Confidence                        2577777776543  23333322  23566778888888765432  2333334  444321100  0


Q ss_pred             cCCCCCCCCCCc-cCCCCcceEEEEECCCCCEEEEe---cCCCcEEEEEccccee--eeee-cCCccceEEEEEcCCCCc
Q 021247          142 SIPRPEGLKPTD-KSSSKKFVLSVAWSPDGRRIACG---SMDGTISVFDVTRAKF--LHHL-EGHFMPVRSLVYSPVDPR  214 (315)
Q Consensus       142 ~~~~~~~~~~~~-~~~~~~~i~~~~~~~~~~~l~~~---s~dg~i~i~d~~~~~~--~~~~-~~~~~~v~~~~~~~~~~~  214 (315)
                      .    ....... .........-+. +..+.+++..   +.++.|...++.....  ...+ ..+...+..-.+...+..
T Consensus       274 ~----~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~Tn~~a~~~~L~~~~~~~~~~~~w~~vi~~~~~~~~~~~~~~~~~~  348 (430)
T d1qfma1         274 T----GILKWVKLIDNFEGEYDYVT-NEGTVFTFKTNRHSPNYRLINIDFTDPEESKWKVLVPEHEKDVLEWVACVRSNF  348 (430)
T ss_dssp             C----SSCCCEEEECSSSSCEEEEE-EETTEEEEEECTTCTTCEEEEEETTBCCGGGCEEEECCCSSCEEEEEEEETTTE
T ss_pred             c----cccceeEeecccccceEEEe-cCCceeecccCcccccceeEEecCCCCccccceEEecccCcceeeeEEEEECCE
Confidence            0    0000000 000001111111 1122233322   2345676677654321  1222 233333433233322344


Q ss_pred             EEEEEeCCC--eEEEEeCCCCeeEEEeecccccEEEEEEcCCCCeE-EEEeC---CCcEEEEecCccc
Q 021247          215 VLFSASDDT--HVHMYDAEGKSLVTAMSGHASWVLSVDASPDGAAI-TTGSS---DRTVKLWDLNMRA  276 (315)
Q Consensus       215 ~l~s~~~d~--~i~~wd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l-~s~~~---d~~i~iwd~~~~~  276 (315)
                      +++.--.++  .|++++..++..........+.+..+..+++...+ ++-+.   =.++.-+|+.+++
T Consensus       349 lvl~~~~~~~~~l~v~~~~~~~~~~~~~~~~~sv~~~~~~~~~~~~~~~~ss~~tP~~~y~~Dl~t~~  416 (430)
T d1qfma1         349 LVLCYLHDVKNTLQLHDLATGALLKIFPLEVGSVVGYSGQKKDTEIFYQFTSFLSPGIIYHCDLTKEE  416 (430)
T ss_dssp             EEEEEEETTEEEEEEEETTTCCEEEEECCCSSEEEEEECCTTCSEEEEEEECSSCCCEEEEEETTSSS
T ss_pred             EEEEEEcCCEeEEEEEECCCCcEEEecCCCCceEeeccCCCCCCEEEEEEcCCCCCCeEEEEECCCCC
Confidence            444555554  58889988776654443334455555544544332 22211   1457777777664

>d1utca2 b.69.6.1 (A:4-330) Clathrin heavy-chain terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Clathrin heavy-chain terminal domain
family: Clathrin heavy-chain terminal domain
domain: Clathrin heavy-chain terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=90.56  E-value=2.7  Score=31.89  Aligned_cols=217  Identities=12%  Similarity=0.119  Sum_probs=113.3

Q ss_pred             EEEEeeCCCcEEEEcCCCCcceeeccccccceEEEEeCCCCCEEEEeeCCCeEEEEECCCC-ceeEEeeCCc----ccEE
Q 021247           32 LLLTGSLDETVKLWRPDDMQLERTNTGHCLGVVSVAAHPSGIIAASASLDSFVRVFDVDTN-ASIATLEASP----SEVW  106 (315)
Q Consensus        32 ~l~sgs~d~~v~~w~~~~~~~~~~~~~h~~~v~~~~~~~~g~~l~s~~~d~~i~~w~~~~~-~~~~~~~~~~----~~v~  106 (315)
                      +|+--+ ..+++++|.++.+..+...-.. +|.-=.|-.+. .|+-.. +..|+-|+++.. .+...++.|.    ..|.
T Consensus        76 IiALra-g~~LQiFnletK~klks~~~~e-~VvfWkWis~~-~L~lVT-~taVYHW~~~g~s~P~k~fdR~~~L~~~QII  151 (327)
T d1utca2          76 VIALKA-GKTLQIFNIEMKSKMKAHTMTD-DVTFWKWISLN-TVALVT-DNAVYHWSMEGESQPVKMFDRHSSLAGCQII  151 (327)
T ss_dssp             EEEEEE-TTEEEEEETTTTEEEEEEECSS-CCCEEEESSSS-EEEEEC-SSEEEEEESSSSCCCEEEEECCGGGTTCEEE
T ss_pred             EEEEec-CCeEEEEehhHhhhhceEEcCC-CcEEEEecCCC-EEEEEc-CCceEEEcccCCCCchhhhhhcccccCceEE
Confidence            455444 5689999998877666543332 44444443333 333332 457999999653 3455555443    4677


Q ss_pred             EEEECCCCCeEEEEec------CCCeEEEEecCCcceeeeecCCCCCCCCCCccCCCCcceEEEEEC--CCCCEEEE---
Q 021247          107 QMQFDPKGTTLAVAGG------GSASVKLWDTATWNLIATLSIPRPEGLKPTDKSSSKKFVLSVAWS--PDGRRIAC---  175 (315)
Q Consensus       107 ~~~~~~~~~~~~~~~~------~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--~~~~~l~~---  175 (315)
                      ..+.+++.+-+++.|=      -.|.+.+|..+..... .+             .+|......+.+.  ++-..|++   
T Consensus       152 nY~~d~~~kW~~l~GI~~~~~~i~G~mQLYS~er~~sQ-~i-------------eGhaa~F~~~~~~g~~~~~~lf~fa~  217 (327)
T d1utca2         152 NYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKVSQ-PI-------------EGHAASFAQFKMEGNAEESTLFCFAV  217 (327)
T ss_dssp             EEEECTTSCEEEEEEEEEETTEEEEEEEEEETTTTEEE-EE-------------CCSEEEEEEECCTTCSSCEEEEEEEE
T ss_pred             EEEECCCCCEEEEEeEecCCCceeEEEEEEEeccCcCc-cc-------------cceeeeeEEEEcCCCCCCceEEEEEE
Confidence            7788888887776552      1256778877643211 11             0111111111110  00011111   


Q ss_pred             -ecCCCcEEEEEcccce---e---e--eeec----CCccceEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCeeEEEeecc
Q 021247          176 -GSMDGTISVFDVTRAK---F---L--HHLE----GHFMPVRSLVYSPVDPRVLFSASDDTHVHMYDAEGKSLVTAMSGH  242 (315)
Q Consensus       176 -~s~dg~i~i~d~~~~~---~---~--~~~~----~~~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~  242 (315)
                       +...+.+++.++....   .   .  ..+.    ...+-..++..++ .-.++..-+.-|.|++||+++++++..-+--
T Consensus       218 r~~~~~kLhIiEig~~~~g~~~f~kk~vdi~fppea~~DFPvamqvs~-kygiiyviTK~G~i~lyDleTgt~i~~nRIs  296 (327)
T d1utca2         218 RGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISE-KHDVVFLITKYGYIHLYDLETGTCIYMNRIS  296 (327)
T ss_dssp             EETTEEEEEEEECSCCCTTCCCCCCEEEECCCCTTCTTCCEEEEEEET-TTTEEEEEETTSEEEEEETTTCCEEEEEECC
T ss_pred             CCCCCcEEEEEEcCCCccCCCCCcceeEEEECCccccCCcEEEEEeec-cCCEEEEEecCcEEEEEEcccccEEEEeecC
Confidence             2334688888875421   1   0  1110    1123344566665 3347778889999999999999887654433


Q ss_pred             cccEEEEEEcCCCCeEEEEeCCCcE
Q 021247          243 ASWVLSVDASPDGAAITTGSSDRTV  267 (315)
Q Consensus       243 ~~~i~~~~~~~~~~~l~s~~~d~~i  267 (315)
                      ...|...+-+.+..=++.-..+|.|
T Consensus       297 ~~~iF~~a~~~~~~Gi~~VNr~GqV  321 (327)
T d1utca2         297 GETIFVTAPHEATAGIIGVNRKGQV  321 (327)
T ss_dssp             SSCEEEEEEETTTTEEEEEETTSEE
T ss_pred             CCceEEeccCCCCceEEEECCCCeE
Confidence            4444433333332223333355544

>d1zgka1 b.68.11.1 (A:322-609) Kelch-like ECH-associated protein 1, KEAP1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Kelch motif
family: Kelch motif
domain: Kelch-like ECH-associated protein 1, KEAP1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.08  E-value=3.2  Score=30.62  Aligned_cols=102  Identities=15%  Similarity=0.153  Sum_probs=47.5

Q ss_pred             CCEEEEecCC-----CcEEEEEcccceeeeeecC-CccceEEEEEcCCCCcEEEEEeCC-----CeEEEEeCCCCeeEEE
Q 021247          170 GRRIACGSMD-----GTISVFDVTRAKFLHHLEG-HFMPVRSLVYSPVDPRVLFSASDD-----THVHMYDAEGKSLVTA  238 (315)
Q Consensus       170 ~~~l~~~s~d-----g~i~i~d~~~~~~~~~~~~-~~~~v~~~~~~~~~~~~l~s~~~d-----~~i~~wd~~~~~~~~~  238 (315)
                      +..++.|+.+     ..+..||+.+.+....-.. ......+....  ++.+++.++.+     .....||....+....
T Consensus       149 ~~~~~~GG~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~--~~~i~i~GG~~~~~~~~~~~~~~~~~~~~~~~  226 (288)
T d1zgka1         149 RLLYAVGGFDGTNRLNSAECYYPERNEWRMITAMNTIRSGAGVCVL--HNCIYAAGGYDGQDQLNSVERYDVETETWTFV  226 (288)
T ss_dssp             TEEEEECCBCSSCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEE--TTEEEEECCBCSSSBCCCEEEEETTTTEEEEC
T ss_pred             ecceEecCcccccccceEEEeeccccccccccccccccccccccce--eeeEEEecCccccccccceeeeeecceeeecc
Confidence            4455555443     3578888876654322111 01111122222  34566666544     2456777765543221


Q ss_pred             eecccccE-EEEEEcCCCCeEEEEeCCCc-----EEEEecCc
Q 021247          239 MSGHASWV-LSVDASPDGAAITTGSSDRT-----VKLWDLNM  274 (315)
Q Consensus       239 ~~~~~~~i-~~~~~~~~~~~l~s~~~d~~-----i~iwd~~~  274 (315)
                      ........ .+++ ..++++++.|+.++.     |.+||+.+
T Consensus       227 ~~~p~~r~~~~~~-~~~~~l~v~GG~~~~~~~~~v~~yd~~~  267 (288)
T d1zgka1         227 APMKHRRSALGIT-VHQGRIYVLGGYDGHTFLDSVECYDPDT  267 (288)
T ss_dssp             CCCSSCCBSCEEE-EETTEEEEECCBCSSCBCCEEEEEETTT
T ss_pred             cCccCcccceEEE-EECCEEEEEecCCCCeecceEEEEECCC
Confidence            11101101 1122 225677777776543     67788775

>d1v04a_ b.68.6.2 (A:) Serum paraoxonase/arylesterase 1, PON1 {Rabit (Oryctolagus cuniculus) [TaxId: 9986]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: Serum paraoxonase/arylesterase 1, PON1
domain: Serum paraoxonase/arylesterase 1, PON1
species: Rabit (Oryctolagus cuniculus) [TaxId: 9986]

Probab=87.29  E-value=5.2  Score=30.88  Aligned_cols=188  Identities=15%  Similarity=0.199  Sum_probs=97.4

Q ss_pred             ceEEEEeCCCCCEEEEeeC------------CCeEEEEECCCCce-eEEeeCCcc-------cEEEEE--ECCCCCeEE-
Q 021247           62 GVVSVAAHPSGIIAASASL------------DSFVRVFDVDTNAS-IATLEASPS-------EVWQMQ--FDPKGTTLA-  118 (315)
Q Consensus        62 ~v~~~~~~~~g~~l~s~~~------------d~~i~~w~~~~~~~-~~~~~~~~~-------~v~~~~--~~~~~~~~~-  118 (315)
                      +.-.+...|+|..+++++.            .|.|.++|+.+... ...+.....       ..-.+.  -.+++...+ 
T Consensus        36 G~EDi~~~~dg~~~issg~~~~~~~~~~~~~~G~i~~~dl~~~~~~~~~l~~~~~~~~~~~f~PhGi~l~~~~dg~~~L~  115 (340)
T d1v04a_          36 GSEDLEILPNGLAFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPAVSELEIIGNTLDISSFNPHGISTFIDDDNTVYLL  115 (340)
T ss_dssp             CCCEEEECTTSEEEEEECCCC--------CCCCEEEEEETTSSSCCEEECEEECSSSCGGGCCEEEEEEEECTTCCEEEE
T ss_pred             CcceEEECCCCcEEEEecCccCCCCCCCCCCCCeEEEEecCCCCCcceEEEecCCCCCCcceeccceeEEEcCCCcEEEE
Confidence            3446777788877766532            48899999876542 222211110       112222  244555333 


Q ss_pred             EEe--cCCCeEEEEecCCcc--eeeeecCCCCCCCCCCccCCCCcceEEEEECCCCCEEEEec-----------------
Q 021247          119 VAG--GGSASVKLWDTATWN--LIATLSIPRPEGLKPTDKSSSKKFVLSVAWSPDGRRIACGS-----------------  177 (315)
Q Consensus       119 ~~~--~~d~~i~~~d~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~s-----------------  177 (315)
                      +..  ....+|-++++....  ....-.+..+          .....+.++...++..+++-.                 
T Consensus       116 vvnH~~~~~~ieif~~~~~~~~l~~~~~v~~~----------~~~~pNDv~~~~~g~fy~Tnd~~~~~~~~~~~e~~~~~  185 (340)
T d1v04a_         116 VVNHPGSSSTVEVFKFQEEEKSLLHLKTIRHK----------LLPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGL  185 (340)
T ss_dssp             EEECSTTCCEEEEEEEETTTTEEEEEEEECCT----------TCSSEEEEEEEETTEEEEEESCSCCSHHHHHHHHHTTC
T ss_pred             EEeccCCCceeEEEEEeCCCCeEEEEeecCCc----------cccCccceEEecCCCEEEecCccCcChhhhhhhHhhcC
Confidence            332  234567777664322  2111111111          112367788877887777621                 


Q ss_pred             CCCcEEEEEcccceeeeeecCCccceEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCeeEEE--eecccccEEEEEEcCCC
Q 021247          178 MDGTISVFDVTRAKFLHHLEGHFMPVRSLVYSPVDPRVLFSASDDTHVHMYDAEGKSLVTA--MSGHASWVLSVDASPDG  255 (315)
Q Consensus       178 ~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~--~~~~~~~i~~~~~~~~~  255 (315)
                      .-+.+..||....+.+  . ..-...+.++++|++..++++.+..+.|++|+++....+..  ...-.+.+-.+.+++++
T Consensus       186 ~~g~v~~~~~~~~~~~--~-~~l~~pNGI~~s~d~~~lyVa~t~~~~i~~y~~~~~~~l~~~~~~~l~~~pDNi~~d~~~  262 (340)
T d1v04a_         186 AWSFVTYYSPNDVRVV--A-EGFDFANGINISPDGKYVYIAELLAHKIHVYEKHANWTLTPLRVLSFDTLVDNISVDPVT  262 (340)
T ss_dssp             CCEEEEEECSSCEEEE--E-EEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEECSSEEEEEEECTTT
T ss_pred             CceeEEEEcCCceEEE--c-CCCCccceeEECCCCCEEEEEeCCCCeEEEEEeCCCcccceEEEecCCCCCCccEEecCC
Confidence            1233444554332221  1 22345688999997667778888899999999875432211  11223445667777643


Q ss_pred             CeEEEEe
Q 021247          256 AAITTGS  262 (315)
Q Consensus       256 ~~l~s~~  262 (315)
                      ..+..++
T Consensus       263 g~lwva~  269 (340)
T d1v04a_         263 GDLWVGC  269 (340)
T ss_dssp             CCEEEEE
T ss_pred             CEEEEEE
Confidence            3344443

>d1xipa_ b.69.14.1 (A:) Nucleoporin NUP159 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nucleoporin domain
family: Nucleoporin domain
domain: Nucleoporin NUP159
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=86.57  E-value=6.1  Score=31.01  Aligned_cols=102  Identities=14%  Similarity=0.026  Sum_probs=60.6

Q ss_pred             ceEEEEeCCCCCEEEEeeCCCeEEEEECCCCceeEEeeCCcccEEEEEECCCCCeEEEEecCCCeEEEEecCCcceeeee
Q 021247           62 GVVSVAAHPSGIIAASASLDSFVRVFDVDTNASIATLEASPSEVWQMQFDPKGTTLAVAGGGSASVKLWDTATWNLIATL  141 (315)
Q Consensus        62 ~v~~~~~~~~g~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~  141 (315)
                      .|..++|+.+  .++. ..++.+..++...............++..+.++|..  + +....++.+.++++..++.....
T Consensus        88 ~v~~vafs~d--~l~v-~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~p~~--~-~l~~~~~~~~~~~l~~~~~~~~~  161 (381)
T d1xipa_          88 DVIFVCFHGD--QVLV-STRNALYSLDLEELSEFRTVTSFEKPVFQLKNVNNT--L-VILNSVNDLSALDLRTKSTKQLA  161 (381)
T ss_dssp             TEEEEEEETT--EEEE-EESSEEEEEESSSTTCEEEEEECSSCEEEEEECSSE--E-EEEETTSEEEEEETTTCCEEEEE
T ss_pred             CeEEEEeeCC--EEEE-EeCCCEEEEEeeccccccccccccccccceecCCce--e-EEEecCCCEEEEEeccCcccccc
Confidence            4788888655  3443 345668888877765555444445678888888863  2 33456889999998876533211


Q ss_pred             cCCCCCCCCCCccCCCCcceEEEEECCCCCEEEEec
Q 021247          142 SIPRPEGLKPTDKSSSKKFVLSVAWSPDGRRIACGS  177 (315)
Q Consensus       142 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~s  177 (315)
                      .....        ..-+....+++|++.|..++++.
T Consensus       162 ~~v~~--------~~~~~~~~~v~ws~kgkq~v~~~  189 (381)
T d1xipa_         162 QNVTS--------FDVTNSQLAVLLKDRSFQSFAWR  189 (381)
T ss_dssp             ESEEE--------EEECSSEEEEEETTSCEEEEEEE
T ss_pred             CCcce--------EEecCCceEEEEeCCcEEEEEeC
Confidence            10000        00012266778887777777663

>d1jtdb_ b.69.5.2 (B:) beta-lactamase inhibitor protein-II, BLIP-II {Streptomyces exfoliatus [TaxId: 1905]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: RCC1/BLIP-II
family: beta-lactamase inhibitor protein-II, BLIP-II
domain: beta-lactamase inhibitor protein-II, BLIP-II
species: Streptomyces exfoliatus [TaxId: 1905]

Probab=84.45  E-value=6.1  Score=29.11  Aligned_cols=220  Identities=14%  Similarity=0.012  Sum_probs=96.4

Q ss_pred             cceEEEEeCCCCCEEEEeeCCCeEEEEECCCCceeEEeeCCcccEEEEEECCCCCeEEEEecCCCeEEEEecCCcceeee
Q 021247           61 LGVVSVAAHPSGIIAASASLDSFVRVFDVDTNASIATLEASPSEVWQMQFDPKGTTLAVAGGGSASVKLWDTATWNLIAT  140 (315)
Q Consensus        61 ~~v~~~~~~~~g~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~  140 (315)
                      ..|..++.... ..++ -. ||.|..|-.+....+-.-......+..++--  ....++.  .|+.+..|.....-..  
T Consensus        26 ~~i~~va~G~~-h~~a-l~-dG~v~~wG~N~~GQlG~~~~~~~~v~~v~~G--~~~~~al--~dg~v~~wG~~~~gq~--   96 (273)
T d1jtdb_          26 SGVDAIAGGYF-HGLA-LK-GGKVLGWGANLNGQLTMPAATQSGVDAIAAG--NYHSLAL--KDGEVIAWGGNEDGQT--   96 (273)
T ss_dssp             SSEEEEEECSS-EEEE-EE-TTEEEEEECCTTSTTSCCGGGGSCCCEEEEC--SSEEEEE--ETTEEEEEECCTTSTT--
T ss_pred             CCcEEEEccCC-EEEE-EE-CCEEEEEeCCCCCceeeeecccccceEEecC--CCceeee--eeeeeeccCCCcceee--
Confidence            35777766332 2333 34 8999999766542221111112233333321  2222222  3788888875432110  


Q ss_pred             ecCCCCCCCCCCccCCCCcceEEEEECCCCCEEEEecCCCcEEEEEcccceeeeeecCCccceEEEEEcCCCCcEEEEEe
Q 021247          141 LSIPRPEGLKPTDKSSSKKFVLSVAWSPDGRRIACGSMDGTISVFDVTRAKFLHHLEGHFMPVRSLVYSPVDPRVLFSAS  220 (315)
Q Consensus       141 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~s~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~  220 (315)
                             .. +..   ....+..++....  ..+. -.|+.+..|.-...............|..+.-.   . ......
T Consensus        97 -------~~-~~~---~~~~~~~i~~~~~--~~~~-~~dg~v~~~g~~~~~~~~~~~~~~~~v~~~~~~---~-~~~~~~  158 (273)
T d1jtdb_          97 -------TV-PAE---ARSGVDAIAAGAW--ASYA-LKDGKVIAWGDDSDGQTTVPAEAQSGVTALDGG---V-YTALAV  158 (273)
T ss_dssp             -------CC-CGG---GGSSCCEEEEETT--EEEE-EETTEEEEEECCTTSTTSCCGGGGSSEEEEEEC---S-SEEEEE
T ss_pred             -------cc-ccc---cccceeEEeeecc--cccc-cccccceecccCCCCceeeeccCCceEEEEecc---c-eeeeee
Confidence                   00 000   0111233333221  2222 247888888643221111111112233333322   1 222233


Q ss_pred             CCCeEEEEeCCCCeeEEEeecccccEEEEEEcCCCCeEEEEeCCCcEEEEecCccceehcccccccceEEEEEeeCCCEE
Q 021247          221 DDTHVHMYDAEGKSLVTAMSGHASWVLSVDASPDGAAITTGSSDRTVKLWDLNMRAAMQSMTNHTDQVWGVSFRPLGGRV  300 (315)
Q Consensus       221 ~d~~i~~wd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l  300 (315)
                      .++.++.|-................|.+++..... .++.  .||.|+-|-.+....+..-......|..|+-... +.+
T Consensus       159 ~~g~~~~~G~~~~g~~~~~~~~~~~v~~Is~G~~h-~~~l--~dG~v~~WG~n~~Gql~~~~~~~~~v~~I~~G~~-~~~  234 (273)
T d1jtdb_         159 KNGGVIAWGDNYFGQTTVPAEAQSGVDDVAGGIFH-SLAL--KDGKVIAWGDNRYKQTTVPTEALSGVSAIASGEW-YSL  234 (273)
T ss_dssp             ETTEEEEEECCTTSTTSCCGGGSSSEEEEEECSSE-EEEE--ETTEEEEEECCTTSTTCCCGGGGSSCCEEEECSS-CEE
T ss_pred             cccceeEeecccCCcccccccccCCccceecccee-eEEE--ecCcEEEcCCCCCCccCCCccCCCCcEEEEeCcc-eEE
Confidence            46788888654321111112234567777665432 2332  3899999965443222211112234556654332 233


Q ss_pred             EEEeCCCcEEEee
Q 021247          301 VSVSDDKSISLYE  313 (315)
Q Consensus       301 ~s~~~d~~i~i~~  313 (315)
                      + . .||.|..|-
T Consensus       235 ~-l-~~g~v~~WG  245 (273)
T d1jtdb_         235 A-L-KNGKVIAWG  245 (273)
T ss_dssp             E-E-ETTEEEEES
T ss_pred             E-E-ECCEEEEEC
Confidence            3 3 378888883

>d1xipa_ b.69.14.1 (A:) Nucleoporin NUP159 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nucleoporin domain
family: Nucleoporin domain
domain: Nucleoporin NUP159
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=82.98  E-value=9.1  Score=29.98  Aligned_cols=137  Identities=10%  Similarity=0.075  Sum_probs=77.3

Q ss_pred             ceEEEEECCCCCEEEEecCCCcEEEEEcccceeeeeecCCccceEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCeeEEEe
Q 021247          160 FVLSVAWSPDGRRIACGSMDGTISVFDVTRAKFLHHLEGHFMPVRSLVYSPVDPRVLFSASDDTHVHMYDAEGKSLVTAM  239 (315)
Q Consensus       160 ~i~~~~~~~~~~~l~~~s~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~  239 (315)
                      .|..++|+.+  .|++. .++.+..++............-..++..+.+.|   ..++....++.+.++++.........
T Consensus        88 ~v~~vafs~d--~l~v~-~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~p---~~~~l~~~~~~~~~~~l~~~~~~~~~  161 (381)
T d1xipa_          88 DVIFVCFHGD--QVLVS-TRNALYSLDLEELSEFRTVTSFEKPVFQLKNVN---NTLVILNSVNDLSALDLRTKSTKQLA  161 (381)
T ss_dssp             TEEEEEEETT--EEEEE-ESSEEEEEESSSTTCEEEEEECSSCEEEEEECS---SEEEEEETTSEEEEEETTTCCEEEEE
T ss_pred             CeEEEEeeCC--EEEEE-eCCCEEEEEeeccccccccccccccccceecCC---ceeEEEecCCCEEEEEeccCcccccc
Confidence            3778888744  45544 445677777654433333333345678888776   35667777889999998876543222


Q ss_pred             ec-----ccccEEEEEEcCCCCeEEEEeCCCcEEE-EecCccceehcccccccceEEEEEeeCCCEEEEE
Q 021247          240 SG-----HASWVLSVDASPDGAAITTGSSDRTVKL-WDLNMRAAMQSMTNHTDQVWGVSFRPLGGRVVSV  303 (315)
Q Consensus       240 ~~-----~~~~i~~~~~~~~~~~l~s~~~d~~i~i-wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~  303 (315)
                      .+     -.+...++.|++.|..++++..+. ..+ -++.....+..-......|.++.|-.+...++..
T Consensus       162 ~~v~~~~~~~~~~~v~ws~kgkq~v~~~g~~-~q~k~~i~~~~~~~~p~~~~~~v~sI~WL~~~~F~vvy  230 (381)
T d1xipa_         162 QNVTSFDVTNSQLAVLLKDRSFQSFAWRNGE-MEKQFEFSLPSELEELPVEEYSPLSVTILSPQDFLAVF  230 (381)
T ss_dssp             ESEEEEEECSSEEEEEETTSCEEEEEEETTE-EEEEEEECCCHHHHTSCTTTSEEEEEEESSSSEEEEEE
T ss_pred             CCcceEEecCCceEEEEeCCcEEEEEeCCCc-eeeccCCCCccccCCCcCCCcceeEEEEecCceEEEEE
Confidence            11     134567788888777777764332 111 1222211122112233467788887665555544

>d1flga_ b.70.1.1 (A:) Ethanol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Ethanol dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=80.33  E-value=15  Score=30.59  Aligned_cols=78  Identities=13%  Similarity=0.106  Sum_probs=44.1

Q ss_pred             CeEEEEeCCCCeeEEEeecccccEEEEEEcCCCCeEEEEeCCCcEEEEecCccceehccccccc-ceEEEEEeeCCC-EE
Q 021247          223 THVHMYDAEGKSLVTAMSGHASWVLSVDASPDGAAITTGSSDRTVKLWDLNMRAAMQSMTNHTD-QVWGVSFRPLGG-RV  300 (315)
Q Consensus       223 ~~i~~wd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~-~v~~~~~s~~~~-~l  300 (315)
                      |.|.-+|+.+++.+=+...+. ++..-.++..+.++++|+.||.++.+|.++++.+=.+..... .-.=+.|..+|+ ||
T Consensus       466 G~l~AiD~~TG~i~W~~~~~~-p~~~g~lstagglVF~Gt~dg~l~A~Da~TGe~LW~~~~~~~~~~~P~ty~~~G~qYv  544 (582)
T d1flga_         466 GSLRAMDPVSGKVVWEHKEHL-PLWAGVLATAGNLVFTGTGDGYFKAFDAKSGKELWKFQTGSGIVSPPITWEQDGEQYL  544 (582)
T ss_dssp             EEEEEECTTTCCEEEEEEESS-CCCSCCEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEE
T ss_pred             CeEEEEcCCCCcEEeecCCCC-CCccceeEEcCCeEEEeCCCCeEEEEECCCCcEeEEEECCCCccccCEEEEECCEEEE
Confidence            345556666555443322111 111111233566888899999999999999998754432211 111156788886 45


Q ss_pred             E
Q 021247          301 V  301 (315)
Q Consensus       301 ~  301 (315)
                      +
T Consensus       545 ~  545 (582)
T d1flga_         545 G  545 (582)
T ss_dssp             E
T ss_pred             E
Confidence            4