Citrus Sinensis ID: 021248

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-----
MQVKGVQVEELYSLDLDSLNNLRPVYGLIFLFKWRPGEKDDRVVIKDPNPNLFFASQVINNACATQAILSILLNCPDIDIGPELSKLKEFTKNFPPELKGLAINNSDAIRAAHNSFARPEPFVPEEQKAAGKDDDVYHFISYIPVDGVLYELDGLKEGPISLGPCTGGQGDMDWLQMVQPVIQERIERYSKSEIRFNLMAVIKNRKELYTAELKEFQRKRERILQQLASLQSERMVDKTSFEALNKSLSEVNAGIEGATEKILMEEEKFKKWRTENIRRKHNYIPFLFNFLKILAEKKQLKPLIEKAKQKTSSSS
ccccccEEEEEEcccHHHHHcccccEEEEEEEEEccccccccccccccccccEEEEcccccHHHHHHHHHHHHccccccccHHHHHHHHHHccccHHHHHHcccccHHHHHHHHHHccccccccccccccccccccEEEEEEEEcccEEEEEccccccccccccccccccccHHHHHHHHHHHHHHHHccccccEEEEHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHccccHHHHHHHHHHHcccc
cccccEEEEEEEcccHHHHHccccEEEEEEEEEccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHccccHHHHHHHccccHHHHHHHHHccccccccccccccccccccEEEEEEEEEcccEEEEEcccccccccccccccccccHHHHHHHHHHHHHHHHHcccccEEEEEEEEcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHccccHHHHHHHHHHHHccc
MQVKGVQVEELYSldldslnnlrpvyGLIFLfkwrpgekddrvvikdpnpnlffASQVINNACATQAILSILlncpdidigpelsklkeftknfppelkglainnSDAIRAAhnsfarpepfvpeeqkaagkdddvyhfisyipvdgvlyeldglkegpislgpctggqgdmdwLQMVQPVIQERIERYSKSEIRFNLMAVIKNRKELYTAELKEFQRKRERILQQLASLQSERMVDKTSFEALNKSLSEVNAGIEGATEKILMEEEKFKKWRTEnirrkhnyiPFLFNFLKILAEKKQLKPLIEKakqktssss
MQVKGVQVEELYSLDLDSLNNLRPVYGLIFLFKWRPGEKDDRVVIKDPNPNLFFASQVINNACATQAILSILLNCPDIDIGPELSKLKEFTKNFPPELKGLAINNSDAIRAAHNSFARPEPFVPEEQKAAGKDDDVYHFISYIPVDGVLYELDGLKEGPISLGPCTGGQGDMDWLQMVQPVIQERIERYSKSEIRFNLMAVIKNRKELYTAELKEFQRKRERILQQLaslqsermvdKTSFEALNkslsevnagiegatekilMEEEKFKKwrtenirrkhnYIPFLFNFLKILAEKKQLKPliekakqktssss
MQVKGVQVeelysldldslnnlRPVYGLIFLFKWRPGEKDDRVVIKDPNPNLFFASQVINNACATQAILSILLNCPDIDIGPELSKLKEFTKNFPPELKGLAINNSDAIRAAHNSFARPEPFVPEEQKAAGKDDDVYHFISYIPVDGVLYELDGLKEGPISLGPCTGGQGDMDWLQMVQPVIQERIERYSKSEIRFNLMAVIKNRKELYTAELKEFQRKRERILQQLASLQSERMVDKTSFEALNKSLSEVNAGIEGATEKILMEEEKFKKWRTENIRRKHNYIPFLFNFLKILAEKKQLKPLIEKAKQKTSSSS
*******VEELYSLDLDSLNNLRPVYGLIFLFKWRPGEKDDRVVIKDPNPNLFFASQVINNACATQAILSILLNCPDIDIGPELSKLKEFTKNFPPELKGLAIN*****************************DDVYHFISYIPVDGVLYELDGLKEGPISLGPCTGGQGDMDWLQMVQPVIQERIERYSKSEIRFNLMAVIKNRKELYTAELKEFQ************************************GIEGATEKILMEEEKFKKWRTENIRRKHNYIPFLFNFLKILAEK******************
MQVKGVQVEELYSLDLDSLNNLRPVYGLIFLFKWRPGEKD*****KDPNPNLFFASQVINNACATQAILSILLNCPDIDIGPELSKLKEFTKNFPPELKGLAINNSDAIRAAHNS*******************DVYHFISYIPVDGVLYELDGLKEGPISLGPCTGGQGDMDWLQMVQPVIQERIERYSKSEIRFNLMAVIKNRKELYTAELKE*QRKRER***********************************A**********FKKWRTENIRRKHNYIPFLFNFLKILAEKKQLKPL************
MQVKGVQVEELYSLDLDSLNNLRPVYGLIFLFKWRPGEKDDRVVIKDPNPNLFFASQVINNACATQAILSILLNCPDIDIGPELSKLKEFTKNFPPELKGLAINNSDAIRAAHNSFARPEPFVPEEQKAAGKDDDVYHFISYIPVDGVLYELDGLKEGPISLGPCTGGQGDMDWLQMVQPVIQERIERYSKSEIRFNLMAVIKNRKELYTAELKEFQRKRERILQQLASLQSERMVDKTSFEALNKSLSEVNAGIEGATEKILMEEEKFKKWRTENIRRKHNYIPFLFNFLKILAEKKQLKPL************
MQVKGVQVEELYSLDLDSLNNLRPVYGLIFLFKWRPGEKDDRVVIKDPNPNLFFASQVINNACATQAILSILLNCPDIDIGPELSKLKEFTKNFPPELKGLAINNSDAIRAAHNSFARPEPFVP******GKDDDVYHFISYIPVDGVLYELDGLKEGPISLGPCTGGQGDMDWLQMVQPVIQERIERYSKSEIRFNLMAVIKNRKELYTAELKEFQRKRERILQQLASLQSERMVD*TSFEALNKSLSEVNAGIEGATEKILMEEEKFKKWRTENIRRKHNYIPFLFNFLKILAEKKQLKPLIEKAKQK*****
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MQVKGVQVEELYSLDLDSLNNLRPVYGLIFLFKWRPGEKDDRVVIKDPNPNLFFASQVINNACATQAILSILLNCPDIDIGPELSKLKEFTKNFPPELKGLAINNSDAIRAAHNSFARPEPFVPEEQKAAGKDDDVYHFISYIPVDGVLYELDGLKEGPISLGPCTGGQGDMDWLQMVQPVIQERIERYSKSEIRFNLxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxRMVDKTSFEALNKSLSEVNAGIEGATEKILMEEEKFKKWRTENIRRKHNYIPFLFNFLKILAEKKQLKPLIEKAKQKTSSSS
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query315 2.2.26 [Sep-21-2011]
Q9XSJ0328 Ubiquitin carboxyl-termin yes no 0.920 0.884 0.490 6e-81
Q9WUP7329 Ubiquitin carboxyl-termin yes no 0.923 0.884 0.496 9e-81
Q06AT3329 Ubiquitin carboxyl-termin yes no 0.923 0.884 0.493 1e-80
Q9Y5K5329 Ubiquitin carboxyl-termin yes no 0.923 0.884 0.487 1e-80
Q54N38343 Ubiquitin carboxyl-termin yes no 0.958 0.880 0.492 4e-79
Q9UUB6300 Ubiquitin carboxyl-termin yes no 0.860 0.903 0.420 2e-60
Q09444321 Probable ubiquitin carbox yes no 0.885 0.869 0.396 9e-58
D3ZHS6 727 Ubiquitin carboxyl-termin no no 0.704 0.305 0.473 7e-50
Q92560 729 Ubiquitin carboxyl-termin no no 0.704 0.304 0.473 2e-49
Q99PU7 728 Ubiquitin carboxyl-termin no no 0.704 0.304 0.469 5e-49
>sp|Q9XSJ0|UCHL5_BOVIN Ubiquitin carboxyl-terminal hydrolase isozyme L5 OS=Bos taurus GN=UCHL5 PE=2 SV=1 Back     alignment and function desciption
 Score =  301 bits (770), Expect = 6e-81,   Method: Compositional matrix adjust.
 Identities = 155/316 (49%), Positives = 216/316 (68%), Gaps = 26/316 (8%)

Query: 3   VKGVQVEELYSLDLDSLNNLRPVYGLIFLFKWRPGEKDDRVVIKDPN-PNLFFASQVINN 61
            +G QVEE++SL+ ++   L+PV+GLIFLFKW+PGE+    V++D     +FFA QVINN
Sbjct: 27  CRGAQVEEIWSLEPENFEKLKPVHGLIFLFKWQPGEEPAGSVVQDSRLDTIFFAKQVINN 86

Query: 62  ACATQAILSILLNCP--DIDIGPELSKLKEFTKNFPPELKGLAINNSDAIRAAHNSFARP 119
           ACATQAI+S+LLNC   D+ +G  LS+ KEF+++F   +KGLA++NSD IR  HNSFAR 
Sbjct: 87  ACATQAIVSVLLNCTHQDVHLGETLSEFKEFSQSFDAAMKGLALSNSDVIRQVHNSFARQ 146

Query: 120 EPFVPEEQKAAGKDDDVYHFISYIPVDGVLYELDGLKEGPISLGPCTGGQGDMDWLQMVQ 179
           + F   + K A K++D +HF+SY+PV+G LYELDGL+EGPI LG C       DW+  V+
Sbjct: 147 QMF-EFDAKTAAKEEDAFHFVSYVPVNGRLYELDGLREGPIDLGACNQD----DWISAVR 201

Query: 180 PVIQERIERYSKSEIRFNLMAVIKNRKELYTAELKEFQRKRERILQQLASLQSERMVDKT 239
           PVI++RI++YS+ EIRFNLMA++ +RK +Y  ++ E QR+          L  E M    
Sbjct: 202 PVIEKRIQKYSEGEIRFNLMAIVSDRKMIYEQKIAELQRQ----------LAEEPMDTDQ 251

Query: 240 SFEALNKSLSEVNAGIEGATEKILMEEE--KFKKWRTENIRRKHNYIPFLFNFLKILAEK 297
               L+   SEV      A  ++L+EEE  K K+++ ENIRRKHNY+PF+   LK LAE 
Sbjct: 252 GSNMLSAIQSEV------AKNQMLIEEEVQKLKRYKIENIRRKHNYLPFIMELLKTLAEH 305

Query: 298 KQLKPLIEKAKQKTSS 313
           +QL PL+EKAK+K ++
Sbjct: 306 QQLIPLVEKAKEKQNA 321
Protease that specifically cleaves 'Lys-48'-linked polyubiquitin chains. Deubiquitinating enzyme associated with the 19S regulatory subunit of the 26S proteasome. Putative regulatory component of the INO80 complex; however is inactive in the INO80 complex and is activated by a transient interaction of the INO80 complex with the proteasome via ADRM1.
Bos taurus (taxid: 9913)
EC: 3EC: .EC: 4EC: .EC: 1EC: 9EC: .EC: 1EC: 2
>sp|Q9WUP7|UCHL5_MOUSE Ubiquitin carboxyl-terminal hydrolase isozyme L5 OS=Mus musculus GN=Uchl5 PE=2 SV=2 Back     alignment and function description
>sp|Q06AT3|UCHL5_PIG Ubiquitin carboxyl-terminal hydrolase isozyme L5 OS=Sus scrofa GN=UCHL5 PE=2 SV=1 Back     alignment and function description
>sp|Q9Y5K5|UCHL5_HUMAN Ubiquitin carboxyl-terminal hydrolase isozyme L5 OS=Homo sapiens GN=UCHL5 PE=1 SV=3 Back     alignment and function description
>sp|Q54N38|UCHL5_DICDI Ubiquitin carboxyl-terminal hydrolase isozyme L5 OS=Dictyostelium discoideum GN=uch2 PE=3 SV=1 Back     alignment and function description
>sp|Q9UUB6|UBLH2_SCHPO Ubiquitin carboxyl-terminal hydrolase 2 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=uch2 PE=1 SV=1 Back     alignment and function description
>sp|Q09444|UBH4_CAEEL Probable ubiquitin carboxyl-terminal hydrolase ubh-4 OS=Caenorhabditis elegans GN=ubh-4 PE=3 SV=2 Back     alignment and function description
>sp|D3ZHS6|BAP1_RAT Ubiquitin carboxyl-terminal hydrolase BAP1 OS=Rattus norvegicus GN=Bap1 PE=3 SV=2 Back     alignment and function description
>sp|Q92560|BAP1_HUMAN Ubiquitin carboxyl-terminal hydrolase BAP1 OS=Homo sapiens GN=BAP1 PE=1 SV=2 Back     alignment and function description
>sp|Q99PU7|BAP1_MOUSE Ubiquitin carboxyl-terminal hydrolase BAP1 OS=Mus musculus GN=Bap1 PE=1 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query315
225431633334 PREDICTED: ubiquitin carboxyl-terminal h 0.996 0.940 0.901 1e-168
356576644334 PREDICTED: ubiquitin carboxyl-terminal h 0.993 0.937 0.910 1e-168
356535244334 PREDICTED: ubiquitin carboxyl-terminal h 0.993 0.937 0.900 1e-166
449447631334 PREDICTED: ubiquitin carboxyl-terminal h 0.993 0.937 0.869 1e-161
449527357308 PREDICTED: ubiquitin carboxyl-terminal h 0.971 0.993 0.866 1e-156
224140903334 predicted protein [Populus trichocarpa] 0.996 0.940 0.869 1e-156
224080017334 predicted protein [Populus trichocarpa] 0.996 0.940 0.863 1e-155
296088487313 unnamed protein product [Vitis vinifera] 0.930 0.936 0.847 1e-154
255556663335 ubiquitin carboxyl-terminal hydrolase is 0.996 0.937 0.866 1e-154
115449807331 Os02g0822200 [Oryza sativa Japonica Grou 0.974 0.927 0.752 1e-139
>gi|225431633|ref|XP_002262954.1| PREDICTED: ubiquitin carboxyl-terminal hydrolase isozyme L5 [Vitis vinifera] gi|147766506|emb|CAN60599.1| hypothetical protein VITISV_027729 [Vitis vinifera] Back     alignment and taxonomy information
 Score =  596 bits (1536), Expect = e-168,   Method: Compositional matrix adjust.
 Identities = 283/314 (90%), Positives = 304/314 (96%)

Query: 1   MQVKGVQVEELYSLDLDSLNNLRPVYGLIFLFKWRPGEKDDRVVIKDPNPNLFFASQVIN 60
           MQVKGVQVEELYSLDLDSLN+LRPVYGLIFLFKWRPGEKDDR+VIKDPNPNLFFASQVIN
Sbjct: 20  MQVKGVQVEELYSLDLDSLNHLRPVYGLIFLFKWRPGEKDDRLVIKDPNPNLFFASQVIN 79

Query: 61  NACATQAILSILLNCPDIDIGPELSKLKEFTKNFPPELKGLAINNSDAIRAAHNSFARPE 120
           NACATQAILSIL+NCPD+DIGPELS LKEFTKNFPPELKGLAINNS+AIR AHNSFARPE
Sbjct: 80  NACATQAILSILMNCPDVDIGPELSMLKEFTKNFPPELKGLAINNSEAIRTAHNSFARPE 139

Query: 121 PFVPEEQKAAGKDDDVYHFISYIPVDGVLYELDGLKEGPISLGPCTGGQGDMDWLQMVQP 180
           PFVPEEQKAAGKDDDVYHFISY+PVDG+LYELDGLKEGPISLG C GGQGD+DW++MVQP
Sbjct: 140 PFVPEEQKAAGKDDDVYHFISYLPVDGILYELDGLKEGPISLGQCPGGQGDLDWVRMVQP 199

Query: 181 VIQERIERYSKSEIRFNLMAVIKNRKELYTAELKEFQRKRERILQQLASLQSERMVDKTS 240
           VIQERIERYS+SEIRFNLMA+IKNRK++YT ELKE Q++RE IL QLA+LQSERMVD ++
Sbjct: 200 VIQERIERYSRSEIRFNLMAIIKNRKDIYTGELKELQKRREHILHQLAALQSERMVDNSN 259

Query: 241 FEALNKSLSEVNAGIEGATEKILMEEEKFKKWRTENIRRKHNYIPFLFNFLKILAEKKQL 300
            EALNKSLSEVNAGIEGATEKILMEEEKFKKWRTENIRRKHNYIPFLFNFLKILAEKKQL
Sbjct: 260 IEALNKSLSEVNAGIEGATEKILMEEEKFKKWRTENIRRKHNYIPFLFNFLKILAEKKQL 319

Query: 301 KPLIEKAKQKTSSS 314
           KPLIEKAKQKT++S
Sbjct: 320 KPLIEKAKQKTNNS 333

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|356576644|ref|XP_003556440.1| PREDICTED: ubiquitin carboxyl-terminal hydrolase isozyme L5-like [Glycine max] Back     alignment and taxonomy information
>gi|356535244|ref|XP_003536158.1| PREDICTED: ubiquitin carboxyl-terminal hydrolase isozyme L5-like [Glycine max] Back     alignment and taxonomy information
>gi|449447631|ref|XP_004141571.1| PREDICTED: ubiquitin carboxyl-terminal hydrolase isozyme L5-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|449527357|ref|XP_004170678.1| PREDICTED: ubiquitin carboxyl-terminal hydrolase isozyme L5-like, partial [Cucumis sativus] Back     alignment and taxonomy information
>gi|224140903|ref|XP_002323817.1| predicted protein [Populus trichocarpa] gi|222866819|gb|EEF03950.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|224080017|ref|XP_002305992.1| predicted protein [Populus trichocarpa] gi|222848956|gb|EEE86503.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|296088487|emb|CBI37478.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|255556663|ref|XP_002519365.1| ubiquitin carboxyl-terminal hydrolase isozyme L5, putative [Ricinus communis] gi|223541432|gb|EEF42982.1| ubiquitin carboxyl-terminal hydrolase isozyme L5, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|115449807|ref|NP_001048557.1| Os02g0822200 [Oryza sativa Japonica Group] gi|48716277|dbj|BAD22892.1| putative ubitquitin C-terminal hydrolase [Oryza sativa Japonica Group] gi|48716519|dbj|BAD23124.1| putative ubiquitin C-terminal hydrolase [Oryza sativa Japonica Group] gi|113538088|dbj|BAF10471.1| Os02g0822200 [Oryza sativa Japonica Group] gi|125541669|gb|EAY88064.1| hypothetical protein OsI_09494 [Oryza sativa Indica Group] gi|125584190|gb|EAZ25121.1| hypothetical protein OsJ_08921 [Oryza sativa Japonica Group] gi|215764980|dbj|BAG86677.1| unnamed protein product [Oryza sativa Japonica Group] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query315
TAIR|locus:2018516330 UCH2 [Arabidopsis thaliana (ta 0.984 0.939 0.762 8.9e-125
TAIR|locus:2171312334 UCH1 [Arabidopsis thaliana (ta 0.971 0.916 0.673 4.1e-113
DICTYBASE|DDB_G0285527343 uch2 "ubiquitin C-terminal hyd 0.958 0.880 0.476 1.4e-69
UNIPROTKB|Q5LJA9368 UCHL5 "Ubiquitin carboxyl-term 0.920 0.788 0.441 6e-64
UNIPROTKB|Q5LJA5355 UCHL5 "Ubiquitin carboxyl-term 0.917 0.814 0.441 9.7e-64
UNIPROTKB|F1P541297 UCHL5 "Uncharacterized protein 0.679 0.720 0.450 2.3e-62
FB|FBgn0051639324 CG31639 [Drosophila melanogast 0.653 0.635 0.469 1.3e-61
FB|FBgn0011327324 Uch-L5 "Ubiquitin carboxy-term 0.653 0.635 0.469 1.3e-61
UNIPROTKB|Q9XSJ0328 UCHL5 "Ubiquitin carboxyl-term 0.761 0.731 0.470 8.6e-56
UNIPROTKB|E2QWM9329 UCHL5 "Uncharacterized protein 0.765 0.732 0.466 2.3e-55
TAIR|locus:2018516 UCH2 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1226 (436.6 bits), Expect = 8.9e-125, P = 8.9e-125
 Identities = 241/316 (76%), Positives = 270/316 (85%)

Query:     1 MQVKGVQVXXXXXXXXXXXXXXRPVYGLIFLFKWRPGEKDDRVVIKDPNPNLFFASQVIN 60
             MQVKGVQV              RPVYGLIFLFKW+ GEKD+R  I+D   NLFFA+QVIN
Sbjct:    20 MQVKGVQVEELYSLDSDSLNNLRPVYGLIFLFKWQAGEKDERPTIQDQVSNLFFANQVIN 79

Query:    61 NACATQAILSILLNCPDIDIGPELSKLKEFTKNFPPELKGLAINNSDAIRAAHNSFARPE 120
             NACATQAIL+ILLN P++DIGPELS LKEFTKNFP +LKGLAINNSD+IRAAHNSFARPE
Sbjct:    80 NACATQAILAILLNSPEVDIGPELSALKEFTKNFPSDLKGLAINNSDSIRAAHNSFARPE 139

Query:   121 PFVPEEQKAAGKDDDVYHFISYIPVDGVLYELDGLKEGPISLGPCTGGQGDMDWLQMVQP 180
             PFVPEEQKAA KDDDVYHFISYIPVDGVLYELDGLKEGPISLGPC G Q  ++WLQMVQP
Sbjct:   140 PFVPEEQKAATKDDDVYHFISYIPVDGVLYELDGLKEGPISLGPCPGDQTGIEWLQMVQP 199

Query:   181 VIQERIERYSKSEIRFNLMAVIKNRKELYTAELKEFQRKRERILQQLASLQSERMVDKTS 240
             VIQERIERYS+SEIRFNL+AVIKNRK++YTAELKE QR+RE++LQQ     +   VDK+ 
Sbjct:   200 VIQERIERYSQSEIRFNLLAVIKNRKDIYTAELKELQRQREQLLQQ-----ANTCVDKSE 254

Query:   241 FEALNKSLSEVNAGIEGATEKILMEEEKFKKWRTENIRRKHNYIPFLFNFLKILAEKKQL 300
              EA+N  ++EV +GIE A++KI+MEEEKF KWRTENIRRKHNYIPFLFNFLK+LAEKKQL
Sbjct:   255 AEAVNALIAEVGSGIEAASDKIVMEEEKFMKWRTENIRRKHNYIPFLFNFLKLLAEKKQL 314

Query:   301 KPLIEKAK-QKTSSSS 315
             KPLIEKAK QKT SS+
Sbjct:   315 KPLIEKAKKQKTESST 330
GO:0004221 "ubiquitin thiolesterase activity" evidence=IEA;ISS
GO:0005622 "intracellular" evidence=IEA;ISS
GO:0005634 "nucleus" evidence=ISM;IDA
GO:0006511 "ubiquitin-dependent protein catabolic process" evidence=IEA;ISS
GO:0008242 "omega peptidase activity" evidence=IEA
GO:0004843 "ubiquitin-specific protease activity" evidence=IDA
GO:0005737 "cytoplasm" evidence=IDA
GO:0010016 "shoot system morphogenesis" evidence=IGI
GO:0016579 "protein deubiquitination" evidence=RCA;IDA
GO:0048366 "leaf development" evidence=IGI
GO:0048367 "shoot system development" evidence=IGI
GO:0005515 "protein binding" evidence=IPI
GO:0009640 "photomorphogenesis" evidence=RCA
GO:0010388 "cullin deneddylation" evidence=RCA
GO:0016567 "protein ubiquitination" evidence=RCA
GO:0016571 "histone methylation" evidence=RCA
GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=RCA
TAIR|locus:2171312 UCH1 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
DICTYBASE|DDB_G0285527 uch2 "ubiquitin C-terminal hydrolase" [Dictyostelium discoideum (taxid:44689)] Back     alignment and assigned GO terms
UNIPROTKB|Q5LJA9 UCHL5 "Ubiquitin carboxyl-terminal hydrolase isozyme L5" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|Q5LJA5 UCHL5 "Ubiquitin carboxyl-terminal hydrolase isozyme L5" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|F1P541 UCHL5 "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
FB|FBgn0051639 CG31639 [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
FB|FBgn0011327 Uch-L5 "Ubiquitin carboxy-terminal hydrolase L5 ortholog" [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
UNIPROTKB|Q9XSJ0 UCHL5 "Ubiquitin carboxyl-terminal hydrolase isozyme L5" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|E2QWM9 UCHL5 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q54N38UCHL5_DICDI3, ., 4, ., 1, 9, ., 1, 20.49210.95870.8804yesno
Q9WUP7UCHL5_MOUSE3, ., 4, ., 1, 9, ., 1, 20.49680.92380.8844yesno
Q06AT3UCHL5_PIG3, ., 4, ., 1, 9, ., 1, 20.49360.92380.8844yesno
Q9UUB6UBLH2_SCHPO3, ., 4, ., 1, 9, ., 1, 20.42000.86030.9033yesno
Q9XSJ0UCHL5_BOVIN3, ., 4, ., 1, 9, ., 1, 20.49050.92060.8841yesno
Q9Y5K5UCHL5_HUMAN3, ., 4, ., 1, 9, ., 1, 20.48730.92380.8844yesno
Q09444UBH4_CAEEL3, ., 4, ., 1, 9, ., 1, 20.39680.88570.8691yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer3.4.190.921
3rd Layer3.4.19.120.914

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query315
cd09617219 cd09617, Peptidase_C12_UCH37_BAP1, Cysteine peptid 1e-118
pfam01088211 pfam01088, Peptidase_C12, Ubiquitin carboxyl-termi 1e-88
cd02255222 cd02255, Peptidase_C12, Cysteine peptidase C12 con 2e-65
cd09616222 cd09616, Peptidase_C12_UCH_L1_L3, Cysteine peptida 2e-33
>gnl|CDD|187738 cd09617, Peptidase_C12_UCH37_BAP1, Cysteine peptidase C12 containing ubiquitin carboxyl-terminal hydrolase (UCH) families UCH37 (UCH-L5) and BAP1 Back     alignment and domain information 
 Score =  338 bits (869), Expect = e-118
 Identities = 133/205 (64%), Positives = 159/205 (77%), Gaps = 7/205 (3%)

Query: 1   MQVKGVQVEELYSLDLDSLNNLRPVYGLIFLFKWRPGEKDDRVVIKD-PNPNLFFASQVI 59
             VKGVQVEELYSLD DSL  L PVYGLIFLFKW+ GE+D+  V+ D    N+FFA+QVI
Sbjct: 18  FGVKGVQVEELYSLDADSLEQLPPVYGLIFLFKWQEGEEDEGSVVDDEIPSNIFFANQVI 77

Query: 60  NNACATQAILSILLNCPD-IDIGPELSKLKEFTKNFPPELKGLAINNSDAIRAAHNSFAR 118
            NACATQA+LS+LLNC D +D+G  LS+ KEFTK F PE+KG AI NS+ IR  HNSFAR
Sbjct: 78  PNACATQALLSVLLNCSDEVDLGETLSEFKEFTKGFDPEMKGEAIGNSEEIRKVHNSFAR 137

Query: 119 PEPFVPEEQ--KAAGKDDDVYHFISYIPVDGVLYELDGLKEGPISLGPCTGGQGDMDWLQ 176
           PEPF+ +E+  K A K++D +HFISY+P+ G LYELDGLKEGPI  GPC+ G+   DWL+
Sbjct: 138 PEPFLLDEKLNKKATKEEDAFHFISYVPIGGRLYELDGLKEGPIDHGPCSEGE---DWLE 194

Query: 177 MVQPVIQERIERYSKSEIRFNLMAV 201
             +PVIQ RI RYS+ EIRFNLMAV
Sbjct: 195 KARPVIQARIARYSEGEIRFNLMAV 219

This ubiquitin C-terminal hydrolase (UCH) family includes UCH37 (also known as UCH-L5) and BRCA1-associated protein-1 (BAP1). They contain a UCH catalytic domain as well as an additional C-terminal extension which plays a role in protein-protein interactions. UCH37 is responsible for ubiquitin (Ub) isopeptidase activity in the 19S proteasome regulatory complex; it disassembles Lys48-linked poly-ubiquitin from the distal end of the chain. It is also associated with the human Ino80 chromatin-remodeling complex (hINO80) in the nucleus and can be activated through transient association of hINO80 with hRpn13 that is bound to the 19S regulatory particle or the proteasome. UCH37 possibly plays a role in oncogenesis; it competes with Smad ubiquitination regulatory factor 2 (Smurf2, ubiquitin ligase) in binding concurrently to Smad7 in order to deubiquitinate the activated type I transforming growth factor beta (TGF-beta) receptor, thus rescuing it from proteasomal degradation. BAP1 binds to the wild-type BRCA1 RING finger domain, localized in the nucleus. In addition to the UCH catalytic domain, BAP1 contains a UCH37-like domain (ULD), binding domains for BRCA1 and BARD1, which form a tumor suppressor heterodimeric complex, and a binding domain for HCFC1, which interacts with histone-modifying complexes during cell division. The full-length human BRCA1 is a ubiquitin ligase. However, BAP1 does not appear to function in the deubiquitination of autoubiquitinated BRCA1. BAP1 exhibits tumor suppressor activity in cancer cells, and gene mutations have been reported in a small number of breast and lung cancer samples. In metastasis of uveal melanoma, the most common primary cancer of the eye, inactivating somatic mutations have been identified in the gene encoding BAP1 on chromosome 3p21.1. These mutations include several that cause premature protein termination as well as affect its UCH domain, thus implicating loss of BAP1 and suggesting that the BAP1 pathway may be a valuable therapeutic target. Length = 219
>gnl|CDD|216294 pfam01088, Peptidase_C12, Ubiquitin carboxyl-terminal hydrolase, family 1 Back     alignment and domain information
>gnl|CDD|187736 cd02255, Peptidase_C12, Cysteine peptidase C12 contains ubiquitin carboxyl-terminal hydrolase (UCH) families L1, L3, L5 and BAP1 Back     alignment and domain information
>gnl|CDD|187737 cd09616, Peptidase_C12_UCH_L1_L3, Cysteine peptidase C12 containing ubiquitin carboxyl-terminal hydrolase (UCH) families L1 and L3 Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 315
KOG2778328 consensus Ubiquitin C-terminal hydrolase [Posttran 100.0
PF01088214 Peptidase_C12: Ubiquitin carboxyl-terminal hydrola 100.0
KOG1415222 consensus Ubiquitin C-terminal hydrolase UCHL1 [Po 100.0
>KOG2778 consensus Ubiquitin C-terminal hydrolase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information 
Probab=100.00  E-value=1.2e-92  Score=653.58  Aligned_cols=293  Identities=66%  Similarity=1.059  Sum_probs=258.2

Q ss_pred             CCCcccEEEEeecCChhhhhccCCceEEEEEeecCCCCccccccccCCCCCccchhhhhhhhhHHHHHHHhhhCCC--CC
Q 021248            1 MQVKGVQVEELYSLDLDSLNNLRPVYGLIFLFKWRPGEKDDRVVIKDPNPNLFFASQVINNACATQAILSILLNCP--DI   78 (315)
Q Consensus         1 lGv~~~~f~DVysLD~~~L~~l~Pv~alIfLFp~~~~~~~~~~~~~~~~~~v~FakQtI~NACgT~AlLh~l~N~~--~i   78 (315)
                      |||+|+||+||||||.+.+..++|||||||||+|.+++++.+....+.-++||||||+|+|||||+|||++|+|+.  +|
T Consensus        20 fgv~gvQVEElysLd~~~~~~~~piyGlIFLFKW~~ed~~~g~v~~D~~~niFFA~QvInNACATqAlLsvLlN~~~~~i   99 (328)
T KOG2778|consen   20 FGVKGVQVEELYSLDSDSLRPLRPIYGLIFLFKWIEEDKPAGSVIDDSVSNIFFAKQVINNACATQALLSVLLNCSHEDI   99 (328)
T ss_pred             cCCCceeEeeeeccCcchhccCCCceeEEEEEEeccCCCCCcccccccccchhhhhhhcccHHHHHHHHHHHHcCCcccc
Confidence            7999999999999999999999999999999999987666655555555689999999999999999999999984  69


Q ss_pred             CCCcchHHHHHHhcCCChhhHHhhhcCCHHHHHHHHhcCCCCCCCccccccCC--CCCCcceEEEEEeeCCeEEeecCCC
Q 021248           79 DIGPELSKLKEFTKNFPPELKGLAINNSDAIRAAHNSFARPEPFVPEEQKAAG--KDDDVYHFISYIPVDGVLYELDGLK  156 (315)
Q Consensus        79 ~lgs~L~~f~~~t~~~~p~~Rg~~L~ns~~i~~~Hns~A~~g~~~~~~~~~~~--~~~~~~HFI~fV~~~G~lyELDGlk  156 (315)
                      +||++|++||+||++|+|+.||.+|+|+++||.+|||||||.++.+++..+..  .++++||||+|||++|+||||||+|
T Consensus       100 dLG~tLs~~K~f~k~f~Pe~KGlal~Nse~Ir~~HNSfARp~~~~~~e~~a~~~~~~dd~yHFVsyvPI~g~lyELDGLk  179 (328)
T KOG2778|consen  100 DLGPTLSELKEFTKGFDPELKGLALGNSEEIRCAHNSFARPEPFRPEEVDAATSAKEDDVYHFVSYVPINGRLYELDGLK  179 (328)
T ss_pred             chhhHHHHHHHHhhcCChhhcccccCCcHHHHHHhccccCCCCcchhhhhcccccccccceeEEEEEeeCCEEEeccCCc
Confidence            99999999999999999999999999999999999999999986654433222  3678999999999999999999999


Q ss_pred             CCCcccCCCCCCCCcccHHHHHHHHHHHHHHhhccCCceeEEEEeecCchHHHHHHHHHHHHHHHHHHHHHhhhhhhhcc
Q 021248          157 EGPISLGPCTGGQGDMDWLQMVQPVIQERIERYSKSEIRFNLMAVIKNRKELYTAELKEFQRKRERILQQLASLQSERMV  236 (315)
Q Consensus       157 ~~Pi~~G~~~~~~~~~~~l~~a~~vi~~ri~~y~~~~i~FslmAL~~d~~~~~~~~l~~l~~~~~~l~~~~~~~~~~~~~  236 (315)
                      .|||+||+|..   +++|+++|+|||++||++|++++|||||||||+|++   ..+|..+++.++.|+.++...      
T Consensus       180 e~PI~lg~~~~---eqeW~d~vrpVIqeRi~~ys~gEIrFNLMAvV~dRk---~a~l~~~~~~~e~l~~~l~~~------  247 (328)
T KOG2778|consen  180 EGPIDLGPCEK---EQEWLDKVRPVIQERIQRYSEGEIRFNLMAVVPDRK---TAELKELQRKREILLQQLQKQ------  247 (328)
T ss_pred             cCCcccCCCCc---cHhHHHHHHHHHHHHHhhCCcceeEEEEEEEeccch---HHHHHHHHHHHHHHHHHHHhh------
Confidence            99999999986   269999999999999999999999999999999998   556666777777777766531      


Q ss_pred             cccchhHhhhhHHHHHHhHHHHHHHHHHHHHHHhhhHHHHhcccCCcHHHHHHHHHHHHhcCCchHHHHHHHHhhc
Q 021248          237 DKTSFEALNKSLSEVNAGIEGATEKILMEEEKFKKWRTENIRRKHNYIPFLFNFLKILAEKKQLKPLIEKAKQKTS  312 (315)
Q Consensus       237 ~~~~~~~~~~~~~~~~~~i~~~~~~i~~E~~k~~~~~~En~rRrhny~pfi~~llk~La~~g~L~~l~~~a~~~~~  312 (315)
                             ........+++|+.++..|..|.+|+.+|+.||+||||||.||+++|+|.||++|+|.+++++||.|..
T Consensus       248 -------~~~~~~~~q~~ia~~~~~i~~e~~K~~~~k~en~rr~hny~pfl~ellk~lae~~~L~~~~~kak~~~~  316 (328)
T KOG2778|consen  248 -------EATEADKEQSEIANLSSHIRPEDEKLKRYKKENIRRKHNYLPFLVELLKILAEEGQLAPLVEKAKPKSM  316 (328)
T ss_pred             -------hccchhhhhhhhcccccccCcchhHhhhcchhhhhhhhcccHHHHHHHHHHhhhcchhhhhhhhcchhh
Confidence                   011112256788888889999999999999999999999999999999999999999999999987654

>PF01088 Peptidase_C12: Ubiquitin carboxyl-terminal hydrolase, family 1; InterPro: IPR001578 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families Back     alignment and domain information
>KOG1415 consensus Ubiquitin C-terminal hydrolase UCHL1 [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query315
3ihr_A328 Crystal Structure Of Uch37 Length = 328 6e-75
3ris_A245 Crystal Structure Of The Catalytic Domain Of Uchl5, 6e-60
3a7s_A228 Catalytic Domain Of Uch37 Length = 228 2e-56
3tb3_A229 Crystal Structure Of The Uch Domain Of Uch-L5 With 8e-56
3rii_A233 Crystal Structure Of The Catalytic Domain Of Uchl5, 7e-55
1xd3_A230 Crystal Structure Of Uchl3-Ubvme Complex Length = 2 2e-13
3irt_A228 Crystal Structure Of The I93m Mutant Of Ubiquitin C 2e-11
2len_A231 Solution Structure Of Uchl1 S18y Variant Length = 2 3e-11
2etl_A228 Crystal Structure Of Ubiquitin Carboxy-terminal Hyd 5e-11
3ifw_A228 Crystal Structure Of The S18y Variant Of Ubiquitin 5e-11
2wdt_A232 Crystal Structure Of Plasmodium Falciparum Uchl3 In 1e-08
>pdb|3IHR|A Chain A, Crystal Structure Of Uch37 Length = 328 Back     alignment and structure 
Iteration: 1

 Score =  277 bits (708), Expect = 6e-75,   Method: Compositional matrix adjust.
 Identities = 148/316 (46%), Positives = 205/316 (64%), Gaps = 26/316 (8%)
Query: 3   VKGVQVXXXXXXXXXXXXXXRPVYGLIFLFKWRPGEKDDRVVIKDPN-PNLFFASQVINN 61
            +G QV              +PV+GLIFLFKW+PGE+    V++D     +FFA QVINN
Sbjct: 27  CRGAQVEEIWSLEPENFEKLKPVHGLIFLFKWQPGEEPAGSVVQDSRLDTIFFAKQVINN 86
Query: 62  ACATQAILSILLNCP--DIDIGPELSKLKEFTKNFPPELKGLAINNSDAIRAAHNSFARP 119
           ACATQAI+S+LLNC   D+ +G  LS+ KEF+++F    KGLA++NSD IR  HNSFAR 
Sbjct: 87  ACATQAIVSVLLNCTHQDVHLGETLSEFKEFSQSFDAAXKGLALSNSDVIRQVHNSFARQ 146
Query: 120 EPFVPEEQKAAGKDDDVYHFISYIPVDGVLYELDGLKEGPISLGPCTGGQGDMDWLQMVQ 179
           + F   + K + K++D +HF+SY+PV+G LYELDGL+EGPI LG C       DW+  V+
Sbjct: 147 QXF-EFDTKTSAKEEDAFHFVSYVPVNGRLYELDGLREGPIDLGACNQD----DWISAVR 201
Query: 180 PVIQERIERYSKSEIRFNLMAVIKNRKELYTAELKEFQRKRERILQQLASLQSERMVDKT 239
           PVI++RI++YS+ EIRFNL A++ +RK +Y  ++ E QR       QLA        +  
Sbjct: 202 PVIEKRIQKYSEGEIRFNLXAIVSDRKXIYEQKIAELQR-------QLAE-------EPX 247
Query: 240 SFEALNKSLSEVNAGIEGATEKILMEEE--KFKKWRTENIRRKHNYIPFLFNFLKILAEK 297
             +  N  LS + +  E A  + L+EEE  K K+++ ENIRRKHNY+PF+   LK LAE 
Sbjct: 248 DTDQGNSXLSAIQS--EVAKNQXLIEEEVQKLKRYKIENIRRKHNYLPFIXELLKTLAEH 305
Query: 298 KQLKPLIEKAKQKTSS 313
           +QL PL+EKAK+K ++
Sbjct: 306 QQLIPLVEKAKEKQNA 321
>pdb|3RIS|A Chain A, Crystal Structure Of The Catalytic Domain Of Uchl5, A Proteasome- Associated Human Deubiquitinating Enzyme, Reveals An Unproductive Form Of The Enzyme Length = 245 Back     alignment and structure
>pdb|3A7S|A Chain A, Catalytic Domain Of Uch37 Length = 228 Back     alignment and structure
>pdb|3TB3|A Chain A, Crystal Structure Of The Uch Domain Of Uch-L5 With 6 Residues Deleted Length = 229 Back     alignment and structure
>pdb|3RII|A Chain A, Crystal Structure Of The Catalytic Domain Of Uchl5, A Proteasome- Associated Human Deubiquitinating Enzyme, Reveals An Unproductive Form Of The Enzyme Length = 233 Back     alignment and structure
>pdb|1XD3|A Chain A, Crystal Structure Of Uchl3-Ubvme Complex Length = 230 Back     alignment and structure
>pdb|3IRT|A Chain A, Crystal Structure Of The I93m Mutant Of Ubiquitin Carboxy-Te Hydrolase L1 Length = 228 Back     alignment and structure
>pdb|2LEN|A Chain A, Solution Structure Of Uchl1 S18y Variant Length = 231 Back     alignment and structure
>pdb|2ETL|A Chain A, Crystal Structure Of Ubiquitin Carboxy-terminal Hydrolase L1 (uch-l1) Length = 228 Back     alignment and structure
>pdb|3IFW|A Chain A, Crystal Structure Of The S18y Variant Of Ubiquitin Carboxy T Hydrolase L1 Bound To Ubiquitin Vinylmethylester Length = 228 Back     alignment and structure
>pdb|2WDT|A Chain A, Crystal Structure Of Plasmodium Falciparum Uchl3 In Complex With The Suicide Inhibitor Ubvme Length = 232 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query315
3ihr_A328 Ubiquitin carboxyl-terminal hydrolase isozyme L5; 1e-101
3rii_A233 Ubiquitin carboxyl-terminal hydrolase isozyme L5; 9e-76
2wdt_A232 Ubiquitin carboxyl-terminal hydrolase L3; hydrolas 2e-69
1cmx_A235 Protein (ubiquitin YUH1-UBAL); ubiquitin hydrolase 5e-63
4dm9_A228 Ubiquitin carboxyl-terminal hydrolase isozyme L1; 3e-61
1xd3_A230 Ubiquitin carboxyl-terminal esterase L3; enzyme-li 3e-61
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 7e-04
>3ihr_A Ubiquitin carboxyl-terminal hydrolase isozyme L5; center for eukaryotic structural genomics, UCH37, UCH-L5, ubiquitin hydrolase, proteasome, INO80; 2.95A {Homo sapiens} Length = 328 Back     alignment and structure
 Score =  298 bits (763), Expect = e-101
 Identities = 147/317 (46%), Positives = 211/317 (66%), Gaps = 22/317 (6%)

Query: 1   MQVKGVQVEELYSLDLDSLNNLRPVYGLIFLFKWRPGEKDDRVVIKD-PNPNLFFASQVI 59
              +G QVEE++SL+ ++   L+PV+GLIFLFKW+PGE+    V++D     +FFA QVI
Sbjct: 25  FGCRGAQVEEIWSLEPENFEKLKPVHGLIFLFKWQPGEEPAGSVVQDSRLDTIFFAKQVI 84

Query: 60  NNACATQAILSILLNCP--DIDIGPELSKLKEFTKNFPPELKGLAINNSDAIRAAHNSFA 117
           NNACATQAI+S+LLNC   D+ +G  LS+ KEF+++F   +KGLA++NSD IR  HNSFA
Sbjct: 85  NNACATQAIVSVLLNCTHQDVHLGETLSEFKEFSQSFDAAMKGLALSNSDVIRQVHNSFA 144

Query: 118 RPEPFVPEEQKAAGKDDDVYHFISYIPVDGVLYELDGLKEGPISLGPCTGGQGDMDWLQM 177
           R + F  + + +A K++D +HF+SY+PV+G LYELDGL+EGPI LG C       DW+  
Sbjct: 145 RQQMFEFDTKTSA-KEEDAFHFVSYVPVNGRLYELDGLREGPIDLGACNQD----DWISA 199

Query: 178 VQPVIQERIERYSKSEIRFNLMAVIKNRKELYTAELKEFQRKRERILQQLASLQSERMVD 237
           V+PVI++RI++YS+ EIRFNLMA++ +RK +Y  ++ E QR+                  
Sbjct: 200 VRPVIEKRIQKYSEGEIRFNLMAIVSDRKMIYEQKIAELQRQLAEEPMDT---------- 249

Query: 238 KTSFEALNKSLSEVNAGIEGATEKILMEEEKFKKWRTENIRRKHNYIPFLFNFLKILAEK 297
               +  N  LS + + +      I  E +K K+++ ENIRRKHNY+PF+   LK LAE 
Sbjct: 250 ----DQGNSMLSAIQSEVAKNQMLIEEEVQKLKRYKIENIRRKHNYLPFIMELLKTLAEH 305

Query: 298 KQLKPLIEKAKQKTSSS 314
           +QL PL+EKAK+K ++ 
Sbjct: 306 QQLIPLVEKAKEKQNAK 322
>3rii_A Ubiquitin carboxyl-terminal hydrolase isozyme L5; alpha-beta-alpha fold, thiol hydroalse, cysteine protease, deubiquitinating enzyme; 2.00A {Homo sapiens} PDB: 3ris_A 3sqa_A 3tb3_A 3a7s_A Length = 233 Back     alignment and structure
>2wdt_A Ubiquitin carboxyl-terminal hydrolase L3; hydrolase-protein binding complex, enzyme-ligand complex, UB isopeptidase, UCH-L superfamily, cystein proteinase, peptid hydrolase; 2.30A {Plasmodium falciparum} PDB: 2we6_A Length = 232 Back     alignment and structure
>1cmx_A Protein (ubiquitin YUH1-UBAL); ubiquitin hydrolase, deubiquitinating enzyme, cysteine protease, enzyme specificity; 2.25A {Synthetic} SCOP: d.3.1.6 Length = 235 Back     alignment and structure
>4dm9_A Ubiquitin carboxyl-terminal hydrolase isozyme L1; ubiquitin hydrolase, ligase, hydrolase, ligase-inhibitor COM; HET: PHQ GME; 2.35A {Homo sapiens} PDB: 3kw5_A 2etl_A* 3irt_A 3kvf_A 3ifw_A Length = 228 Back     alignment and structure
>1xd3_A Ubiquitin carboxyl-terminal esterase L3; enzyme-ligand complex, active site crossover loop, hydrolase; HET: GVE; 1.45A {Homo sapiens} SCOP: d.3.1.6 PDB: 1uch_A* Length = 230 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query315
3ihr_A328 Ubiquitin carboxyl-terminal hydrolase isozyme L5; 100.0
3rii_A233 Ubiquitin carboxyl-terminal hydrolase isozyme L5; 100.0
1xd3_A230 Ubiquitin carboxyl-terminal esterase L3; enzyme-li 100.0
4dm9_A228 Ubiquitin carboxyl-terminal hydrolase isozyme L1; 100.0
2wdt_A232 Ubiquitin carboxyl-terminal hydrolase L3; hydrolas 100.0
1cmx_A235 Protein (ubiquitin YUH1-UBAL); ubiquitin hydrolase 100.0
>3ihr_A Ubiquitin carboxyl-terminal hydrolase isozyme L5; center for eukaryotic structural genomics, UCH37, UCH-L5, UB hydrolase, proteasome, INO80; 2.95A {Homo sapiens} Back     alignment and structure
Probab=100.00  E-value=2e-93  Score=681.56  Aligned_cols=294  Identities=50%  Similarity=0.896  Sum_probs=236.6

Q ss_pred             CCCcccEEEEeecCChhhhhccCCceEEEEEeecCCCCcccccccc-CCCCCccchhhhhhhhhHHHHHHHhhhCCC--C
Q 021248            1 MQVKGVQVEELYSLDLDSLNNLRPVYGLIFLFKWRPGEKDDRVVIK-DPNPNLFFASQVINNACATQAILSILLNCP--D   77 (315)
Q Consensus         1 lGv~~~~f~DVysLD~~~L~~l~Pv~alIfLFp~~~~~~~~~~~~~-~~~~~v~FakQtI~NACgT~AlLh~l~N~~--~   77 (315)
                      |||++|+|+||||||+++|++++|||||||||||++..+....... ...++|||+||||+||||||||||+|+|++  .
T Consensus        25 LGv~~~~f~DVysLD~e~L~~l~Pv~alIfLFp~~~~~e~~~~~~~~~~~~~v~f~kQtI~NACGT~ALLh~l~N~~~~~  104 (328)
T 3ihr_A           25 FGCRGAQVEEIWSLEPENFEKLKPVHGLIFLFKWQPGEEPAGSVVQDSRLDTIFFAKQVINNACATQAIVSVLLNCTHQD  104 (328)
T ss_dssp             HTCBSEEEEECCCCCHHHHHTTCSEEEEEEEEECCSCCCCSSEECCSTTTTTSCCCCCCSGGGHHHHHHHHHHHTCCCTT
T ss_pred             cCCCceEEEEeccCCHHHHhcccCceEEEEEEecCchhhhcccccccCcccccchHHHhccchHHHHHHHHHHHcCCccc
Confidence            6999999999999999999999999999999999875443322222 223579999999999999999999999986  4


Q ss_pred             CCCCcchHHHHHHhcCCChhhHHhhhcCCHHHHHHHHhcCCCCCCCccccccCCCCCCcceEEEEEeeCCeEEeecCCCC
Q 021248           78 IDIGPELSKLKEFTKNFPPELKGLAINNSDAIRAAHNSFARPEPFVPEEQKAAGKDDDVYHFISYIPVDGVLYELDGLKE  157 (315)
Q Consensus        78 i~lgs~L~~f~~~t~~~~p~~Rg~~L~ns~~i~~~Hns~A~~g~~~~~~~~~~~~~~~~~HFI~fV~~~G~lyELDGlk~  157 (315)
                      |++||.|++|+++|.+|+|++||.+|+|++.|+.+||+||++|++..+ ++++.+++++||||||||+||+||||||||+
T Consensus       105 I~~Gs~L~~f~~~t~~l~P~~Rg~~L~ns~~i~~aHns~A~~g~~~~d-t~~~~~d~~~~HFIafV~~dG~LyELDG~k~  183 (328)
T 3ihr_A          105 VHLGETLSEFKEFSQSFDAAMKGLALSNSDVIRQVHNSFARQQMFEFD-TKTSAKEEDAFHFVSYVPVNGRLYELDGLRE  183 (328)
T ss_dssp             CBCHHHHHHHHHHHTTSCHHHHHHHHHTCHHHHHHHHTTC------------------CEEEEEEEEETTEEEEEETTSS
T ss_pred             CCCCcHHHHHHHHhcCCCHHHHHHHHhcCHHHHHHHHHHhccCCccCC-CCCCCCcCcceeEEEEEeeCCEEEEcCCCCC
Confidence            999999999999999999999999999999999999999999976432 2334456678999999999999999999999


Q ss_pred             CCcccCCCCCCCCcccHHHHHHHHHHHHHHhhccCCceeEEEEeecCchHHHHHHHHHHHHHHHHHHHHHhhhhhhhccc
Q 021248          158 GPISLGPCTGGQGDMDWLQMVQPVIQERIERYSKSEIRFNLMAVIKNRKELYTAELKEFQRKRERILQQLASLQSERMVD  237 (315)
Q Consensus       158 ~Pi~~G~~~~~~~~~~~l~~a~~vi~~ri~~y~~~~i~FslmAL~~d~~~~~~~~l~~l~~~~~~l~~~~~~~~~~~~~~  237 (315)
                      |||+||+|++    ++||++|+++|++||++|++++++|||||||+|++..++++|+.+++++.      ..        
T Consensus       184 gPI~hG~~~~----e~~l~~a~~vi~~ri~~y~~~eirFslmAL~~d~~~~~~~~l~~l~~~~~------~~--------  245 (328)
T 3ihr_A          184 GPIDLGACNQ----DDWISAVRPVIEKRIQKYSEGEIRFNLMAIVSDRKMIYEQKIAELQRQLA------EE--------  245 (328)
T ss_dssp             SCEEEEECBT----TBCHHHHHHHHHHHHHHHHHHCCCEEEEEEEECHHHHHHHHHHHHHHHHH------HS--------
T ss_pred             CCcccCCCCc----hhHHHHHHHHHHHHHHhcCCCCceEEEEEecCChHHHHHHHHHHHHhhhh------cc--------
Confidence            9999999985    89999999999999999988899999999999999999999998854211      00        


Q ss_pred             ccchhHhhhhHHHHHHhHHHHHHHHHHHHHHHhhhHHHHhcccCCcHHHHHHHHHHHHhcCCchHHHHHHHHhhcc
Q 021248          238 KTSFEALNKSLSEVNAGIEGATEKILMEEEKFKKWRTENIRRKHNYIPFLFNFLKILAEKKQLKPLIEKAKQKTSS  313 (315)
Q Consensus       238 ~~~~~~~~~~~~~~~~~i~~~~~~i~~E~~k~~~~~~En~rRrhny~pfi~~llk~La~~g~L~~l~~~a~~~~~~  313 (315)
                      ....+.....+.+++.+|..+++.|++|++||++|+.||+||||||+|||+++||.||++|+|.+|+++||+|+++
T Consensus       246 ~~~~~~~~~~~~~~~~ei~~~~~~l~~E~~kr~~w~~En~rRrhny~pfi~~llk~la~~~~l~~~~e~ak~~~~~  321 (328)
T 3ihr_A          246 PMDTDQGNSMLSAIQSEVAKNQMLIEEEVQKLKRYKIENIRRKHNYLPFIMELLKTLAEHQQLIPLVEKAKEKQNA  321 (328)
T ss_dssp             CCCC------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHGGGSSSTTTTTC----------
T ss_pred             cccchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcHHHHHHHHHHHHhcccHHHHHHHHHHHHHH
Confidence            0011122345677899999999999999999999999999999999999999999999999999999999988764
>3rii_A Ubiquitin carboxyl-terminal hydrolase isozyme L5; alpha-beta-alpha fold, thiol hydroalse, cysteine protease, deubiquitinating enzyme; 2.00A {Homo sapiens} SCOP: d.3.1.0 PDB: 3ris_A 3sqa_A 3tb3_A 3a7s_A Back     alignment and structure
>1xd3_A Ubiquitin carboxyl-terminal esterase L3; enzyme-ligand complex, active site crossover loop, hydrolase; HET: GVE; 1.45A {Homo sapiens} SCOP: d.3.1.6 PDB: 1uch_A* Back     alignment and structure
>4dm9_A Ubiquitin carboxyl-terminal hydrolase isozyme L1; ubiquitin hydrolase, ligase, hydrolase, ligase-inhibitor COM; HET: PHQ GME; 2.35A {Homo sapiens} PDB: 3kw5_A 2etl_A* 3irt_A 3kvf_A 3ifw_A 2len_A Back     alignment and structure
>2wdt_A Ubiquitin carboxyl-terminal hydrolase L3; hydrolase-protein binding complex, enzyme-ligand complex, UB isopeptidase, UCH-L superfamily, cystein proteinase, peptid hydrolase; 2.30A {Plasmodium falciparum} PDB: 2we6_A Back     alignment and structure
>1cmx_A Protein (ubiquitin YUH1-UBAL); ubiquitin hydrolase, deubiquitinating enzyme, cysteine protease, enzyme specificity; 2.25A {Synthetic} SCOP: d.3.1.6 Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 315
d2etla1223 d.3.1.6 (A:1-223) Ubiquitin carboxyl-terminal hydr 1e-69
d1xd3a_229 d.3.1.6 (A:) Ubiquitin carboxyl-terminal hydrolase 3e-67
d1cmxa_229 d.3.1.6 (A:) Ubiquitin carboxyl-terminal hydrolase 1e-55
>d2etla1 d.3.1.6 (A:1-223) Ubiquitin carboxyl-terminal hydrolase isozyme l1 {Human (Homo sapiens) [TaxId: 9606]} Length = 223 Back     information, alignment and structure

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Ubiquitin carboxyl-terminal hydrolase UCH-L
domain: Ubiquitin carboxyl-terminal hydrolase isozyme l1
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  213 bits (545), Expect = 1e-69
 Identities = 53/214 (24%), Positives = 98/214 (45%), Gaps = 23/214 (10%)

Query: 1   MQVKGV-QVEELYSLDLDSLNNL-RPVYGLIFLFKWRPG------EKDDRVVIKDPNPNL 52
           + V G  +  ++  L+ +SL ++  P   L+ LF           ++ + +  ++ +P +
Sbjct: 20  LGVAGQWRFVDVLGLEEESLGSVPAPACALLLLFPLTAQHENFRKKQIEELKGQEVSPKV 79

Query: 53  FFASQVINNACATQAILSILLNCPD---IDIGPELSKLKEFTKNFPPELKGLAINNSDAI 109
           +F  Q I N+C T  ++  + N  D    + G  L +    T+   PE +      ++AI
Sbjct: 80  YFMKQTIGNSCGTIGLIHAVANNQDKLGFEDGSVLKQFLSETEKMSPEDRAKCFEKNEAI 139

Query: 110 RAAHNSFARPEPFVPEEQKAAGKDDDVYHFISYIPVDGVLYELDGLKEGPISLGPCTGGQ 169
           +AAH++ A+      +       D   +HFI +  VDG LYELDG    P++ G  +   
Sbjct: 140 QAAHDAVAQEGQCRVD-------DKVNFHFILFNNVDGHLYELDGRMPFPVNHGASSED- 191

Query: 170 GDMDWLQMVQPVIQERIERYSKSEIRFNLMAVIK 203
                L+    V +E  E   + E+RF+ +A+ K
Sbjct: 192 ---TLLKDAAKVCREFTE-REQGEVRFSAVALCK 221
>d1xd3a_ d.3.1.6 (A:) Ubiquitin carboxyl-terminal hydrolase UCH-l3 {Human (Homo sapiens) [TaxId: 9606]} Length = 229 Back     information, alignment and structure
>d1cmxa_ d.3.1.6 (A:) Ubiquitin carboxyl-terminal hydrolase UCH-l3 {Synthetic, based on Saccharomyces cerevisiae sequence} Length = 229 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query315
d1xd3a_229 Ubiquitin carboxyl-terminal hydrolase UCH-l3 {Huma 100.0
d2etla1223 Ubiquitin carboxyl-terminal hydrolase isozyme l1 { 100.0
d1cmxa_229 Ubiquitin carboxyl-terminal hydrolase UCH-l3 {Synt 100.0
>d1xd3a_ d.3.1.6 (A:) Ubiquitin carboxyl-terminal hydrolase UCH-l3 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Ubiquitin carboxyl-terminal hydrolase UCH-L
domain: Ubiquitin carboxyl-terminal hydrolase UCH-l3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.3e-69  Score=494.43  Aligned_cols=195  Identities=30%  Similarity=0.441  Sum_probs=174.0

Q ss_pred             CCCc-ccEEEEeecCChhhhhcc-CCceEEEEEeecCCCCcccc--------ccccCCCCCccchhhhhhhhhHHHHHHH
Q 021248            1 MQVK-GVQVEELYSLDLDSLNNL-RPVYGLIFLFKWRPGEKDDR--------VVIKDPNPNLFFASQVINNACATQAILS   70 (315)
Q Consensus         1 lGv~-~~~f~DVysLD~~~L~~l-~Pv~alIfLFp~~~~~~~~~--------~~~~~~~~~v~FakQtI~NACgT~AlLh   70 (315)
                      |||+ +++|+||||||+++|+++ +|||||||||||++..+..+        ...++.+++|||+||||+||||||||||
T Consensus        22 lGv~~~~~f~Dvysld~d~L~~ip~Pv~avI~Lfp~~~~~e~~~~~~~~~~~~~~~~~~~~v~f~kQti~NACgT~Allh  101 (229)
T d1xd3a_          22 LGLHPNWQFVDVYGMDPELLSMVPRPVCAVLLLFPITEKYEVFRTEEEEKIKSQGQDVTSSVYFMKQTISNACGTIGLIH  101 (229)
T ss_dssp             TTBCTTEEEEECCCSSHHHHTTSCSCEEEEEEEEECCHHHHHHHHHHHHHHHHHCCCCCTTCCCCCCCSBTCHHHHHHHH
T ss_pred             hCCCCCCEEEEeccCCHHHHhhcCCCcEEEEEEEECCchhhhhhcccccccccccCCCCccceehhhhhhhhhHHHHHHH
Confidence            7998 999999999999999999 99999999999997533211        1122345679999999999999999999


Q ss_pred             hhhCCCC---CCCCcchHHHHHHhcCCChhhHHhhhcCCHHHHHHHHhcCCCCCCCccccccCCCCCCcceEEEEEeeCC
Q 021248           71 ILLNCPD---IDIGPELSKLKEFTKNFPPELKGLAINNSDAIRAAHNSFARPEPFVPEEQKAAGKDDDVYHFISYIPVDG  147 (315)
Q Consensus        71 ~l~N~~~---i~lgs~L~~f~~~t~~~~p~~Rg~~L~ns~~i~~~Hns~A~~g~~~~~~~~~~~~~~~~~HFI~fV~~~G  147 (315)
                      +|+|+++   |.+||.|++|+++|++|+|++||++|+|++.|+.+||+||++|++..    +..+++++||||||||+||
T Consensus       102 ~l~N~~~~~~i~~gs~L~~f~~~t~~~~p~eRg~~l~~~~~l~~aH~s~A~~g~t~~----p~~~~~~~~HFI~fV~~~G  177 (229)
T d1xd3a_         102 AIANNKDKMHFESGSTLKKFLEESVSMSPEERARYLENYDAIRVTHETSAHEGQTEA----PSIDEKVDLHFIALVHVDG  177 (229)
T ss_dssp             HHHTTGGGCCBCTTCHHHHHHHHHTTSCHHHHHHHHHTCHHHHHHHHHHHTCSSSCC----CCTTSCCCEEEEEEEEETT
T ss_pred             HHhcCccccccCCcHHHHHHHHHcCCCCHHHHHHHhhcCHHHHHHHHHhccccCCCC----CCcccccceeEEEEEeeCC
Confidence            9999986   78899999999999999999999999999999999999999998642    2334556799999999999


Q ss_pred             eEEeecCCCCCCcccCCCCCCCCcccHHHHHHHHHHHHHHhhccCCceeEEEEeecC
Q 021248          148 VLYELDGLKEGPISLGPCTGGQGDMDWLQMVQPVIQERIERYSKSEIRFNLMAVIKN  204 (315)
Q Consensus       148 ~lyELDGlk~~Pi~~G~~~~~~~~~~~l~~a~~vi~~ri~~y~~~~i~FslmAL~~d  204 (315)
                      +||||||||+|||+||++++    ++|+++|+++||+||+++ +++++||||||++.
T Consensus       178 ~lyELDG~k~~Pi~hG~~~~----~~~l~~a~~vi~~~~~~~-~~~~~FsllAl~~s  229 (229)
T d1xd3a_         178 HLYELDGRKPFPINHGETSD----ETLLEDAIEVCKKFMERD-PDELRFNAIALSAA  229 (229)
T ss_dssp             EEEEECTTSSSCEEEEECCT----TTHHHHHHHHHHHHHHHS-TTCCCCEEEEEEEC
T ss_pred             EEEEccCCCCCCcccCCCCc----hhHHHHHHHHHHHHHHhC-CCceEEEEEEEecC
Confidence            99999999999999999986    789999999999999996 68999999999974
>d2etla1 d.3.1.6 (A:1-223) Ubiquitin carboxyl-terminal hydrolase isozyme l1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1cmxa_ d.3.1.6 (A:) Ubiquitin carboxyl-terminal hydrolase UCH-l3 {Synthetic, based on Saccharomyces cerevisiae sequence} Back     information, alignment and structure