Citrus Sinensis ID: 021279

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-----
Protein Sequence
MSQHRAFSSPDLAKASSSNADRPEDLSFEGIAANVKLLLKLIQDHTEASTKDQDHRKPQRIAGMITILDDVKTRIQKSQPVAKRSVAELRRCNTDLRPNRAPRDKKLCEPITDDKEKLRRQLSASLAARKSLEVLCSSLGKEKEIMAGELARKVHELNEMEELINDFKAQNASLLAKVQNCAAEHKEKKCSAGEIQGNAALQERNKALSEHLLKSLDGYRSLKKKYKYVKEENTAMRATMEELGKKVEAGIDQILGFRQRIATKEEQEVDIEEEITALEGMFDSFNMKIKKHIQNKSDCGKPKAPINASKPSVLA
Secondary Structure (PSIPRED)
cccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cccEEEcccccccccccccccccccccHHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHcccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHcccccccccccEEEEcccccEcc
Coil and Loop (DISEMBL)
msqhrafsspdlakasssnadrpedlsfEGIAANVKLLLKLIQDHteastkdqdhrkpqrIAGMITILDDVKTRIQKSQPVAKRSVAELRRCntdlrpnraprdkklcepitddKEKLRRQLSASLAARKSLEVLCSSLGKEKEIMAGELARKVHELNEMEELINDFKAQNASLLAKVQNCAAEHkekkcsageiqgNAALQERNKALSEHLLKSLDGYRSLKKKYKYVKEENTAMRATMEELGKKVEAGIDQILGFRQRIATKEEQEVDIEEEITALEGMFDSFNMKIKKHIQnksdcgkpkapinaskpsvla
Flexible Loop (DISEMBL)
msqhrafsspdlakasssnadrpeDLSFEGIAANVKLLLKLIQDHTeastkdqdhrkpqriaGMITILddvktriqksqpvakrsvaelrrcntdlrpnraprdkklcepitddkekLRRQLSASLAARKSLEVLCSSLGKEKEIMAGELARKVHELNEMEELINDFKAQNASLLAKVQNCAAEHKEKKCSAGEIQGNAALQERNKALSEHLLksldgyrslkKKYKYVKEENTAMRATMEELGKKVEAGIDQILGFRQRiatkeeqevdIEEEITALEGMFDSFNMKIKKHIqnksdcgkpkapinaskpsvla
Low Complexity Region (SEG)
MSQHRAFSSPDLAKASSSNADRPEDLSFEGIAANVKLLLKLIQDHTEASTKDQDHRKPQRIAGMITILDDVKTRIQKSQPVAKRSVAELRRCNTDLRPNRAPRDKKLCEPITDDKEKLRRQLSASLAARKSLEVLCSSLGKEKEIMAGELARKVHELNEMEELINDFKAQNASLLAKVQNCAAEHKEKKCSAGEIQGNAALQERNKALSEHLLKSLDGYRSLKKKYKYVKEENTAMRATMEELGKKVEAGIDQILGFRQRIATKeeqevdieeeITALEGMFDSFNMKIKKHIQNKSDCGKPKAPINASKPSVLA
Disordered region (IsUnstruct)
***************************FEGIAANVKLLLKLIQ*****************IAGMITILDDVK*************************************************************VLCS*******IMAGELARKVHELNEMEELINDFKAQNASLLAKVQNC**********************************LDGYRSLKKKYKYVK************LGKKVEAGIDQILGFRQRIATK****VDIEEEITALEGMFDSFNMKI**************************
Disordered Region (DISOPRED)
********************************ANVKLL*******************PQRIAGMITILD***********************************************************************************************************************************************************************************************************************************************SKPSVL*
Disordered Region (DISEMBL)
**********************PEDLSFEGIAANVKLLLKLIQDH***********KPQRIAGMITILDDVKTRIQ*********VAELRRCNTDLRPNRAPRDKKLCEPITDDKEKLRRQLSASLAARKSLEVLCSSLGKEKEIMAGELARKVHELNEMEELINDFKAQNASLLAKVQNCAAEHKEKKCSAGEIQGNAALQERNKALSEHLLKSLDGYRSLKKKYKYVKEENTAMRATMEELGKKVEAGIDQILGFRQRIATKEEQEVDIEEEITALEGMFDSFNMKIKKH***********************
Disordered Region (DISPRO)
***********************EDLSFEGIAANVKLLLKLIQDHTEASTKDQDHRKPQRIAGMITILDDVKTRIQKSQP***R**AELRRCNTDLRPNRAPRDKKLCEPITDDKEKLRRQLSASLAARKSLEVLCSSLGKEKEIMAGELARKVHELNEMEELINDFKAQNASLLAKVQNCAAEHKE*******IQGNAALQERNKALSEHLLKSLDGYRSLKKKYKYVKEENTAMRATMEELGKKVEAGIDQILGFRQRIATKEEQEVDIEEEITALEGMFDSFNMKIKKHIQNKSDCGKPKAPINASKP*V**
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MSQHRAFSSPDLAKASSSNADRPEDLSFEGIAANVKLLLKLIQDHTEASTKDQDHRKPQRIAGMITILDDVKTRIQKSQPVAKRSVAELRRCNTDLRPNRAPRDKKLCEPITDDKEKLRRQLSASLAARKSLEVLCSSLGKEKEIMAGExxxxxxxxxxxxxxxxxxxxxxxxxxxxVQNCAAEHKEKKCSAGEIQGNAALQERNKALSEHLLKSLDGYRSLKKKYKYVKEENTAMRATMEELGKKVEAGIDQILGFRQRIATKEEQEVDIEEEITALEGMFDSFNMKIKKHIQNKSDCGKPKAPINASKPSVLA
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	315
225443978	320	PREDICTED: uncharacterized protein LOC10	0.984	0.968	0.615	2e-99
255580469	305	conserved hypothetical protein [Ricinus	0.946	0.977	0.617	9e-97
224114473	289	predicted protein [Populus trichocarpa]	0.907	0.989	0.621	5e-91
147809937	306	hypothetical protein VITISV_016808 [Viti	0.939	0.967	0.563	4e-87
297809753	308	hypothetical protein ARALYDRAFT_352465 [	0.917	0.938	0.526	5e-75
356557799	296	PREDICTED: uncharacterized protein LOC10	0.923	0.983	0.523	2e-74
15236347	342	myosin heavy chain-like protein [Arabido	0.926	0.853	0.528	3e-74
449435874	316	PREDICTED: uncharacterized protein LOC10	0.958	0.955	0.520	3e-74
356546512	294	PREDICTED: uncharacterized protein LOC10	0.914	0.979	0.524	6e-74
297740787	212	unnamed protein product [Vitis vinifera]	0.596	0.886	0.631	4e-58

>gi|225443978|ref|XP_002280610.1| PREDICTED: uncharacterized protein LOC100251421 [Vitis vinifera]

 Score =  368 bits (945), Expect = 2e-99,   Method: Compositional matrix adjust.
 Identities = 200/325 (61%), Positives = 239/325 (73%), Gaps = 15/325 (4%)

Query: 1   MSQHRAFSSPDLAKASSSN--------ADRPEDLSFEGIAANVKLLLKLIQDHTEASTKD 52
           MS+ RA SSPDL  +S ++         DRP+DLS EG++ N+KLLLKLIQDH EA  KD
Sbjct: 1   MSRVRAISSPDLLPSSLNDHTNHNQNIQDRPDDLSLEGVSTNIKLLLKLIQDHNEACAKD 60

Query: 53  -QDHRKPQRIAGMIT-ILDDVKTRIQKSQPVAKRSVAELRRCNTDLRPNRAPRDKKLCEP 110
             D RK QR+AGM+T ILDDVK RIQK Q ++K+  AELRRCNTDLRP   PRDKK  E 
Sbjct: 61  INDERKLQRVAGMMTNILDDVKFRIQKCQTLSKKREAELRRCNTDLRPGHVPRDKKPTEA 120

Query: 111 ITDDKEKLRRQLSASLAARKSLEVLCSSLGKEKEIMAGELARKVHELNEMEELINDFKAQ 170
             ++K+K++++L+ASLAA+KSLE++CSSLGKEKEIMA ELARKV EL+  EEL+ND KAQ
Sbjct: 121 GGEEKQKMKKELNASLAAQKSLEIMCSSLGKEKEIMATELARKVQELSGTEELVNDLKAQ 180

Query: 171 NASLLAKVQNCAAEHKEKKCSAGEIQGNAALQERNKALSEHLLKSLDGYRSLKKKYKYVK 230
           N  LL KVQN  AEHKE      E  GN ALQ+RNKALSE LLKS+DGYRSLK+K K  +
Sbjct: 181 NEMLLEKVQNFVAEHKEV-----ETLGNEALQDRNKALSEKLLKSIDGYRSLKRKLKEAQ 235

Query: 231 EENTAMRATMEELGKKVEAGIDQILGFRQRIATKEEQEVDIEEEITALEGMFDSFNMKIK 290
           EEN  +  T+EE+G  V AG+DQI  FRQRI T  EQ VDIEEE++AL  MF+ F +K  
Sbjct: 236 EENAGLHMTLEEVGVDVAAGLDQIRSFRQRIITGNEQAVDIEEEMSALAHMFERFEIKAT 295

Query: 291 KHIQNKSDCGKPKAPINASKPSVLA 315
           KH Q KS+C KPK  I AS PSVLA
Sbjct: 296 KHRQKKSECVKPKVVIKASSPSVLA 320

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255580469|ref|XP_002531060.1| conserved hypothetical protein [Ricinus communis] gi|223529355|gb|EEF31321.1| conserved hypothetical protein [Ricinus communis]

 Score =  359 bits (922), Expect = 9e-97,   Method: Compositional matrix adjust.
 Identities = 197/319 (61%), Positives = 243/319 (76%), Gaps = 21/319 (6%)

Query: 1   MSQHRAFSSPDLAKASSSNADRPEDLSFEGIAANVKLLLKLIQDHTEASTKDQDHRKPQR 60
           +++ RAFSSP+LA + SS A RPED S E              +H  AST D   RK QR
Sbjct: 4   ITRVRAFSSPELAPSPSSPAIRPEDYSLE--------------EHNGASTID--DRKTQR 47

Query: 61  IAGMITILDDVKTRIQKSQPVAKRSVAELRRCNTDLRPNRAP----RDKKLCEPITDDKE 116
           IAGMITILDDVK+RI+KSQ   KR +AELRRCNT+LRP+R P    RDKK  E + DD E
Sbjct: 48  IAGMITILDDVKSRIEKSQSARKR-LAELRRCNTELRPSRTPNTPTRDKKSQESLADDNE 106

Query: 117 KLRRQLSASLAARKSLEVLCSSLGKEKEIMAGELARKVHELNEMEELINDFKAQNASLLA 176
           KL++QLSASLAARKSLE++CSSLGKEKEIMA E+ARKV ELN MEELI+D KAQNA+LLA
Sbjct: 107 KLKKQLSASLAARKSLEIMCSSLGKEKEIMAREVARKVGELNGMEELISDLKAQNATLLA 166

Query: 177 KVQNCAAEHKEKKCSAGEIQGNAALQERNKALSEHLLKSLDGYRSLKKKYKYVKEENTAM 236
           K+Q+ AAE KEK+ S G++QGNAALQ+RNKALS+ LLKSLD YRSLK+KYK  KEEN  +
Sbjct: 167 KLQSHAAEQKEKRNSGGDVQGNAALQDRNKALSDQLLKSLDSYRSLKRKYKDAKEENFRI 226

Query: 237 RATMEELGKKVEAGIDQILGFRQRIATKEEQEVDIEEEITALEGMFDSFNMKIKKHIQNK 296
           + T+EE+G +V AG +QI  FRQR+ + ++Q  DIE+EI+ALE MF+  NMKI KH +  
Sbjct: 227 QTTLEEIGVEVTAGFEQIQSFRQRMGSCKDQPPDIEKEISALERMFEQVNMKICKHEEKN 286

Query: 297 SDCGKPKAPINASKPSVLA 315
           ++C +PKA I+ASK SV+A
Sbjct: 287 AECARPKAEISASKRSVVA 305

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224114473|ref|XP_002316770.1| predicted protein [Populus trichocarpa] gi|224114477|ref|XP_002316771.1| predicted protein [Populus trichocarpa] gi|222859835|gb|EEE97382.1| predicted protein [Populus trichocarpa] gi|222859836|gb|EEE97383.1| predicted protein [Populus trichocarpa]

 Score =  340 bits (872), Expect = 5e-91,   Method: Compositional matrix adjust.
 Identities = 182/293 (62%), Positives = 225/293 (76%), Gaps = 7/293 (2%)

Query: 1   MSQHRAFSSPDLAKASSSNADR-PEDLSFEGIAANVKLLLKLIQDHTEASTKDQDHRKPQ 59
           +S+ RAFSSP+L    +S+ D+ PED S EG+A NVKLLLKLIQDH EASTKD D RK +
Sbjct: 3   VSRVRAFSSPELLPLPTSSTDQGPEDYSLEGVATNVKLLLKLIQDHNEASTKDNDDRKMR 62

Query: 60  RIAGMITILDDVKTRIQKSQPVAKRSVAELRRCNTDLRPNRAPRDKKLCEPITDDKEKLR 119
           R AGM++ILDDVK RIQKSQ   K+   +LRRCNTDLR ++AP DKK  E + D+KE+L+
Sbjct: 63  RFAGMVSILDDVKFRIQKSQS-GKKKAPQLRRCNTDLRRSQAPADKKPQESVGDEKERLK 121

Query: 120 RQLSASLAARKSLEVLCSSLGKEKEIMAGELARKVHELNEMEELINDFKAQNASLLAKVQ 179
           +QL+AS+AARKSLE++CSSLGKEKEIMA E+ARKVHELNE EEL++D KAQN +L+AK+Q
Sbjct: 122 KQLNASMAARKSLEMMCSSLGKEKEIMAAEIARKVHELNEAEELVSDLKAQNETLMAKLQ 181

Query: 180 NCAAEHKEKKCSAGEIQGNAALQERNKALSEHLLKSLDGYRSLKKKYKYVKEENTAMRAT 239
              A  K+   S GE QGNAALQERN+ LSE LLKSLD  RSLK+KYK  KEEN A+ AT
Sbjct: 182 -ARAPQKKSSNSGGEAQGNAALQERNRTLSEQLLKSLDSCRSLKRKYKVAKEENRAICAT 240

Query: 240 MEELGKKVEAGIDQILGFRQRIATKEEQEVDIEEEITALEGMFDSFNMKIKKH 292
           M+ +  +V AG+++I  FR R+A  +    DIEEEI+ LE MF+ F MKI KH
Sbjct: 241 MDVIKIEVGAGLEKIRSFRSRVAISK----DIEEEISELEQMFEGFEMKISKH 289

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147809937|emb|CAN67097.1| hypothetical protein VITISV_016808 [Vitis vinifera]

 Score =  327 bits (838), Expect = 4e-87,   Method: Compositional matrix adjust.
 Identities = 183/325 (56%), Positives = 226/325 (69%), Gaps = 29/325 (8%)

Query: 1   MSQHRAFSSPDLAKASSSN--------ADRPEDLSFEGIAANVKLLLKLIQDHTEASTKD 52
           MS+ RA SSPDL  +S ++         DRP+DLS EG++ N+KLLLKLIQDH EA  KD
Sbjct: 1   MSRVRAISSPDLLPSSLNDHTNHNQNIQDRPDDLSLEGVSTNIKLLLKLIQDHNEACAKD 60

Query: 53  -QDHRKPQRIAGMIT-ILDDVKTRIQKSQPVAKRSVAELRRCNTDLRPNRAPRDKKLCEP 110
             D RK QR+AGM+T ILDDVK RIQK Q ++K+  AELRRCNTDLRP   PRDKK  E 
Sbjct: 61  INDERKLQRVAGMMTNILDDVKFRIQKCQTLSKKREAELRRCNTDLRPGHVPRDKKPTEA 120

Query: 111 ITDDKEKLRRQLSASLAARKSLEVLCSSLGKEKEIMAGELARKVHELNEMEELINDFKAQ 170
             ++K+K++++L+ASLAA+KSLE++CSSLGKEKEIMA ELARKV EL+  EEL+ND KAQ
Sbjct: 121 GGEEKQKMKKELNASLAAQKSLEIMCSSLGKEKEIMATELARKVQELSGTEELVNDLKAQ 180

Query: 171 NASLLAKVQNCAAEHKEKKCSAGEIQGNAALQERNKALSEHLLKSLDGYRSLKKKYKYVK 230
           N  LL K                E++ +  +  R+   SE LLKS+DGYRSLK+K K  +
Sbjct: 181 NEMLLEK----------------EMKPSKIVTRRS---SEKLLKSIDGYRSLKRKLKEAQ 221

Query: 231 EENTAMRATMEELGKKVEAGIDQILGFRQRIATKEEQEVDIEEEITALEGMFDSFNMKIK 290
           EEN  +  T+EE+G  V AG+DQI  FRQRI T  EQ VDIEEE++AL  MF+ F +K  
Sbjct: 222 EENAGLHMTLEEVGVDVAAGLDQIRSFRQRIITGNEQAVDIEEEMSALAHMFERFEIKAT 281

Query: 291 KHIQNKSDCGKPKAPINASKPSVLA 315
           KH Q KS+C KPK  I AS PSVLA
Sbjct: 282 KHRQKKSECVKPKVVIKASSPSVLA 306

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297809753|ref|XP_002872760.1| hypothetical protein ARALYDRAFT_352465 [Arabidopsis lyrata subsp. lyrata] gi|297318597|gb|EFH49019.1| hypothetical protein ARALYDRAFT_352465 [Arabidopsis lyrata subsp. lyrata]

 Score =  287 bits (734), Expect = 5e-75,   Method: Compositional matrix adjust.
 Identities = 166/315 (52%), Positives = 211/315 (66%), Gaps = 26/315 (8%)

Query: 1   MSQHRAFSSPDLAKA-SSSNADRP---------EDLSFEGIAANVKLLLKLIQDHTEAST 50
           MS+ RAFS+PDL  + S S    P         ED   EGI  NVKLLLKL+QDH EA++
Sbjct: 1   MSRLRAFSAPDLVPSDSGSITSSPTRTIEHQSHEDSGLEGITTNVKLLLKLVQDHNEATS 60

Query: 51  KDQDHRKPQRIAGMITILDDVKTRIQKSQPVAKRSVAELRRCNTDLRP----NRAPRDKK 106
           +  D  K QR+  M+TILDD+KTRIQK+Q  +     ELRRC TDL+P     ++P    
Sbjct: 61  RHHDDWKVQRVNTMMTILDDLKTRIQKAQQQSSSGKKELRRCFTDLKPGHDLTKSPTKPP 120

Query: 107 LCEPITDDKEKLRRQLSASLAARKSLEVLCSSLGKEKEIMAGELARKVHELNEMEELIND 166
             +P  +D +KLR++LSAS+AARKSL+++CSSLGKEKEIMA EL+RK HELNEMEELI+D
Sbjct: 121 QNDP--EDIQKLRKELSASMAARKSLQMMCSSLGKEKEIMALELSRKAHELNEMEELISD 178

Query: 167 FKAQNASLLAKVQNCAAEH-KEKKCSAGEI----QGNAALQERNKALSEHLLKSLDGYRS 221
           F+AQN  LL KVQNCAAEH KEKK   G++      N  LQ RNK LSE LLKS+DGYRS
Sbjct: 179 FRAQNEKLLKKVQNCAAEHNKEKK---GDVDCPEDNNVPLQGRNKELSEQLLKSIDGYRS 235

Query: 222 LKKKYKYVKEENTAMRATMEELGKKVEAGIDQILGFRQRIATKEEQEVDIEEEITALEGM 281
           LK+KYK V+EEN +MR  + +  + V  G  ++    ++I  K+  EV+IE EI+ LE +
Sbjct: 236 LKRKYKDVQEENGSMRRALRDYAEGVNVGTQRLTKLHEKITRKD--EVNIENEISDLEKL 293

Query: 282 FDSFNMKIKKHIQNK 296
           F    +KI  H Q K
Sbjct: 294 FQGLGLKISNHSQKK 308

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356557799|ref|XP_003547198.1| PREDICTED: uncharacterized protein LOC100805497 [Glycine max]

 Score =  285 bits (728), Expect = 2e-74,   Method: Compositional matrix adjust.
 Identities = 158/302 (52%), Positives = 218/302 (72%), Gaps = 11/302 (3%)

Query: 1   MSQHRAFSSPDLAKASSSNAD-RPED-LSFEGIAANVKLLLKLIQDHTEASTKDQDHRKP 58
           M   RA+SSP    +S+SN + +PE+  S EG+A NVKLLLKLIQDH  +STK+ D RK 
Sbjct: 1   MDHARAYSSPHFLSSSTSNFNGQPEEECSLEGLATNVKLLLKLIQDHNGSSTKENDERKF 60

Query: 59  QRIAGMITILDDVKTRIQKSQPVAKRSVAELRRCNTDLRPN-RAPRDKKLCEPI-TDDKE 116
            R+ GM+ ILD+ ++RIQK Q  ++R  AELRRCNTDLRP   +P+D+K    +  D+KE
Sbjct: 61  HRVNGMMFILDEARSRIQKIQSTSQRR-AELRRCNTDLRPKIPSPKDRKPPSDVPIDEKE 119

Query: 117 KLRRQLSASLAARKSLEVLCSSLGKEKEIMAGELARKVHELNEMEELINDFKAQNASLLA 176
           +L+R+L+ASL AR+SL+ +CSSLGKEK+IMA ELARK  EL E+E+ I D KAQN  L+ 
Sbjct: 120 RLKRELNASLVARQSLQAMCSSLGKEKQIMAAELARKAQELTELEDFIGDLKAQNDMLME 179

Query: 177 KVQNCAAEHKEKKCSAGEIQGNAALQERNKALSEHLLKSLDGYRSLKKKYKYVKEENTAM 236
           K+   ++E KEKK S  E++ N  L+ERNKALSE L KS+DGYRSLK++ + ++EEN  +
Sbjct: 180 KLHAWSSEQKEKKGSGVEMECNIVLRERNKALSEQLQKSIDGYRSLKRRLRDIQEENRQI 239

Query: 237 RATMEELGKKVEAGIDQILGFRQ-RIATKEEQEVDIEEEITALEGMFDSFNMKIKKHIQN 295
           R T+E++ ++V+AGI +I  F++ R+ T E     I+EEI+A+E M DS  MKI K+ Q 
Sbjct: 240 RDTVEQMEEEVDAGIHRIGSFKEGRMRTNE-----IKEEISAMEHMLDSLKMKISKYTQK 294

Query: 296 KS 297
           K+
Sbjct: 295 KT 296

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15236347|ref|NP_192271.1| myosin heavy chain-like protein [Arabidopsis thaliana] gi|4263049|gb|AAD15318.1| hypothetical protein [Arabidopsis thaliana] gi|7270685|emb|CAB77847.1| hypothetical protein [Arabidopsis thaliana] gi|332656946|gb|AEE82346.1| myosin heavy chain-like protein [Arabidopsis thaliana]

 Score =  285 bits (728), Expect = 3e-74,   Method: Compositional matrix adjust.
 Identities = 166/314 (52%), Positives = 208/314 (66%), Gaps = 22/314 (7%)

Query: 1   MSQHRAFSSPDLAKA-SSSNADRP---------EDLSFEGIAANVKLLLKLIQDHTEAST 50
           MS+ RAFS+PDL  + S S    P         ED   EGI  NVKLLLKL+QDH EA++
Sbjct: 33  MSRLRAFSAPDLVPSDSGSITSSPTRTIEHQSHEDSGLEGITTNVKLLLKLVQDHNEATS 92

Query: 51  KDQDHRKPQRIAGMITILDDVKTRIQKSQPVAKRSVAELRRCNTDLRPNRAPR-DKKLCE 109
           +  D  K QR+  M+TILDD+KTRIQK+Q  +     ELRRC TDL+  R+P   K   +
Sbjct: 93  RHHDDWKVQRVNTMMTILDDLKTRIQKAQQQSSSGKKELRRCYTDLK--RSPDLTKSPTK 150

Query: 110 PITDDKE---KLRRQLSASLAARKSLEVLCSSLGKEKEIMAGELARKVHELNEMEELIND 166
           P  +D E   KLR++LSAS+AARKSL+++CSSLGKEKEIMA EL+RK HELNEMEEL++D
Sbjct: 151 PPQNDPEDIQKLRKELSASMAARKSLQMMCSSLGKEKEIMALELSRKAHELNEMEELVSD 210

Query: 167 FKAQNASLLAKVQNCAAEH-KEKK---CSAGEIQGNAALQERNKALSEHLLKSLDGYRSL 222
           F+AQN  LL KVQNCA EH KEKK      G    N  LQ RNK LSE LLKS+DGYRSL
Sbjct: 211 FRAQNEKLLKKVQNCAVEHNKEKKEDIDGPGPGDNNVPLQGRNKELSEQLLKSIDGYRSL 270

Query: 223 KKKYKYVKEENTAMRATMEELGKKVEAGIDQILGFRQRIATKEEQEVDIEEEITALEGMF 282
           K+KYK V++EN +MR  + +  + V  G  ++    ++I    E EV+IE EI+ LE +F
Sbjct: 271 KRKYKDVQDENGSMRRALRDYAEGVNVGTQRLTKLHEKIT--REDEVNIENEISNLEKLF 328

Query: 283 DSFNMKIKKHIQNK 296
               +KI  H QNK
Sbjct: 329 QGLGLKILNHSQNK 342

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449435874|ref|XP_004135719.1| PREDICTED: uncharacterized protein LOC101212613 [Cucumis sativus] gi|449488596|ref|XP_004158104.1| PREDICTED: uncharacterized protein LOC101228771 [Cucumis sativus]

 Score =  284 bits (727), Expect = 3e-74,   Method: Compositional matrix adjust.
 Identities = 162/311 (52%), Positives = 217/311 (69%), Gaps = 9/311 (2%)

Query: 5   RAFSSPDLAKAS-SSNADRPEDLSFEGIAANVKLLLKLIQDHTEASTKDQDHRKPQRIAG 63
           RA SSP+LA  +  S      D +F G++ NV+LLLKLI ++ E S K  D  K QRI+ 
Sbjct: 10  RALSSPELANTTLISPRQHHIDQNFVGVSTNVRLLLKLIHEYKEVSMKGNDGSKDQRISE 69

Query: 64  MITILDDVKTRIQKSQPVAKRSVAELRRCNTDLRPNRAPRDKKLCEP-ITDDKEKLRRQL 122
           M+ I+D+VK++IQKS+ + KR  AELRRCNTDLR N  P+DKK  EP I D+KE+LRR+L
Sbjct: 70  MMLIIDEVKSQIQKSRSLGKRREAELRRCNTDLRRN-VPKDKKTNEPIIIDEKERLRREL 128

Query: 123 SASLAARKSLEVLCSSLGKEKEIMAGELARKVHELNEMEELINDFKAQNASLLAKVQNCA 182
           +AS+A+RKSLE +CSS+GKEKEI+A ELAR V +L+ MEE +ND KAQN  L+ KVQ C 
Sbjct: 129 NASVASRKSLESICSSIGKEKEIIAKELARTVQQLHGMEEHVNDLKAQNEMLMCKVQACV 188

Query: 183 AEHKEKKCSAGEIQGN-AALQERNKALSEHLLKSLDGYRSLKKKYKYVKEENTAMRATME 241
           AEH+ KK +  + QGN  ALQ+RNK L+E LLKSLD YRSLK+K K  +E      A ME
Sbjct: 189 AEHRVKKNNVPDAQGNFEALQKRNKVLTEQLLKSLDAYRSLKRKLKEYQERRNGTNARME 248

Query: 242 ELGKKVEAGIDQILGFRQRIATK--EEQEVDIEEEITALEGMFDSFNMKIKKHIQNKSDC 299
           E+G +V AG+++I  F++ + T+  +++++DIE EI+ALE MF  F+ +I K  + K   
Sbjct: 249 EMGIQVRAGLERIHSFKEMMITQTDDDKQIDIESEISALEHMFKCFDFEISKQTKVKK-- 306

Query: 300 GKPKAPINASK 310
             P   INA K
Sbjct: 307 -HPVDRINADK 316

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356546512|ref|XP_003541670.1| PREDICTED: uncharacterized protein LOC100788843 [Glycine max]

 Score =  283 bits (725), Expect = 6e-74,   Method: Compositional matrix adjust.
 Identities = 159/303 (52%), Positives = 213/303 (70%), Gaps = 15/303 (4%)

Query: 1   MSQHRAFSSPDLAKASSSNADRPEDL---SFEGIAANVKLLLKLIQDHTEASTKDQDHRK 57
           M   RAFSSP    +S+SN +  +D+     EG+A NVKLLLKLIQDH  +STK+ D RK
Sbjct: 1   MDHVRAFSSPHFLSSSTSNFNGQQDIEECGLEGLATNVKLLLKLIQDHNGSSTKENDERK 60

Query: 58  PQRIAGMITILDDVKTRIQKSQPVAKRSVAELRRCNTDLRPN-RAPRDKKLCEPI-TDDK 115
             R+ GM+ ILD+ + RIQK Q   +R  AELRRCNTDLRPN  AP+D+K    +  D+K
Sbjct: 61  FHRVNGMMFILDEARNRIQKIQSTTQRR-AELRRCNTDLRPNIPAPKDRKPPSDVPIDEK 119

Query: 116 EKLRRQLSASLAARKSLEVLCSSLGKEKEIMAGELARKVHELNEMEELINDFKAQNASLL 175
           E+L+R+L+ASL AR+SL+ +CSSLGKEK+IMA ELARK  EL EME+ I D KAQN  L+
Sbjct: 120 ERLKRELNASLVARQSLQAMCSSLGKEKQIMAAELARKAQELTEMEDFIGDLKAQNDMLM 179

Query: 176 AKVQNCAAEHKEKKCSAGEIQGNAALQERNKALSEHLLKSLDGYRSLKKKYKYVKEENTA 235
            K+     E KEKK +  E++ N  L+ERNKALSE L KS+DGYRS+K++ + ++EEN  
Sbjct: 180 EKLH----EQKEKKGNGVEMECNIVLRERNKALSEQLQKSIDGYRSMKRRLRDIQEENRQ 235

Query: 236 MRATMEELGKKVEAGIDQILG-FRQRIATKEEQEVDIEEEITALEGMFDSFNMKIKKHIQ 294
           +R TME++ ++V+AGID+ +G F++R     E    I+EEI+ALE M DS  MK+ K+ Q
Sbjct: 236 IRDTMEQMEEEVDAGIDRNIGRFKERNMRTNE----IKEEISALEHMLDSLKMKVSKYTQ 291

Query: 295 NKS 297
            K+
Sbjct: 292 KKT 294

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297740787|emb|CBI30969.3| unnamed protein product [Vitis vinifera]

 Score =  231 bits (588), Expect = 4e-58,   Method: Compositional matrix adjust.
 Identities = 125/198 (63%), Positives = 151/198 (76%), Gaps = 10/198 (5%)

Query: 1   MSQHRAFSSPDLAKASSSN--------ADRPEDLSFEGIAANVKLLLKLIQDHTEASTKD 52
           MS+ RA SSPDL  +S ++         DRP+DLS EG++ N+KLLLKLIQDH EA  KD
Sbjct: 1   MSRVRAISSPDLLPSSLNDHTNHNQNIQDRPDDLSLEGVSTNIKLLLKLIQDHNEACAKD 60

Query: 53  -QDHRKPQRIAGMIT-ILDDVKTRIQKSQPVAKRSVAELRRCNTDLRPNRAPRDKKLCEP 110
             D RK QR+AGM+T ILDDVK RIQK Q ++K+  AELRRCNTDLRP   PRDKK  E 
Sbjct: 61  INDERKLQRVAGMMTNILDDVKFRIQKCQTLSKKREAELRRCNTDLRPGHVPRDKKPTEA 120

Query: 111 ITDDKEKLRRQLSASLAARKSLEVLCSSLGKEKEIMAGELARKVHELNEMEELINDFKAQ 170
             ++K+K++++L+ASLAA+KSLE++CSSLGKEKEIMA ELARKV EL+  EEL+ND KAQ
Sbjct: 121 GGEEKQKMKKELNASLAAQKSLEIMCSSLGKEKEIMATELARKVQELSGTEELVNDLKAQ 180

Query: 171 NASLLAKVQNCAAEHKEK 188
           N  LL KVQN  AEHKEK
Sbjct: 181 NEMLLEKVQNFVAEHKEK 198

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	315
TAIR|locus:2140705	342	AT4G03620 "AT4G03620" [Arabido	0.926	0.853	0.506	3.1e-67
ASPGD|ASPL0000075283	2404	myoB [Emericella nidulans (tax	0.828	0.108	0.212	3e-05
DICTYBASE|DDB_G0268498	818	DDB_G0268498 "unknown" [Dictyo	0.885	0.341	0.214	0.00011
UNIPROTKB|Q02224	2701	CENPE "Centromere-associated p	0.679	0.079	0.247	0.00072
UNIPROTKB|P13648	657	LMNA "Lamin-A" [Gallus gallus	0.558	0.267	0.225	0.00083

TAIR|locus:2140705 AT4G03620 "AT4G03620" [Arabidopsis thaliana (taxid:3702)]

 Score = 683 (245.5 bits), Expect = 3.1e-67, P = 3.1e-67
 Identities = 159/314 (50%), Positives = 202/314 (64%)

Query:     1 MSQHRAFSSPDLAKASSSN-ADRP---------EDLSFEGIAANVKLLLKLIQDHTEAST 50
             MS+ RAFS+PDL  + S +    P         ED   EGI  NVKLLLKL+QDH EA++
Sbjct:    33 MSRLRAFSAPDLVPSDSGSITSSPTRTIEHQSHEDSGLEGITTNVKLLLKLVQDHNEATS 92

Query:    51 KDQDHRKPQRIAGMITILDDVKTRIQKSQPVAKRSVAELRRCNTDLRPNRAPR-DKKLCE 109
             +  D  K QR+  M+TILDD+KTRIQK+Q  +     ELRRC TDL+  R+P   K   +
Sbjct:    93 RHHDDWKVQRVNTMMTILDDLKTRIQKAQQQSSSGKKELRRCYTDLK--RSPDLTKSPTK 150

Query:   110 PITDDKE---KLRRQLSASLAARKSLEVLCSSLGKEKEIMAGELARKVHELNEMEELIND 166
             P  +D E   KLR++LSAS+AARKSL+++CSSLGKEKEIMA EL+RK HELNEMEEL++D
Sbjct:   151 PPQNDPEDIQKLRKELSASMAARKSLQMMCSSLGKEKEIMALELSRKAHELNEMEELVSD 210

Query:   167 FKAQNASLLAKVQNCAAEH-KEKK---CSAGEIQGNAALQERNKALSEHLLKSLDGYRSL 222
             F+AQN  LL KVQNCA EH KEKK      G    N  LQ RNK LSE LLKS+DGYRSL
Sbjct:   211 FRAQNEKLLKKVQNCAVEHNKEKKEDIDGPGPGDNNVPLQGRNKELSEQLLKSIDGYRSL 270

Query:   223 KKKYKYVKEENTAMRATMEELGKKVEAGIDQILGFRQRIATKXXXXXXXXXXITALEGMF 282
             K+KYK V++EN +MR  + +  + V  G  ++    ++I  +          I+ LE +F
Sbjct:   271 KRKYKDVQDENGSMRRALRDYAEGVNVGTQRLTKLHEKITREDEVNIENE--ISNLEKLF 328

Query:   283 DSFNMKIKKHIQNK 296
                 +KI  H QNK
Sbjct:   329 QGLGLKILNHSQNK 342

GO:0003674 "molecular_function" evidence=ND

GO:0005737 "cytoplasm" evidence=ISM

GO:0009827 "plant-type cell wall modification" evidence=RCA

GO:0009860 "pollen tube growth" evidence=RCA

GO:0048610 "cellular process involved in reproduction" evidence=RCA

GO:0048868 "pollen tube development" evidence=RCA

ASPGD|ASPL0000075283 myoB [Emericella nidulans (taxid:162425)]

 Score = 135 (52.6 bits), Expect = 3.0e-05, P = 3.0e-05
 Identities = 57/268 (21%), Positives = 117/268 (43%)

Query:    47 EASTKDQDHRKPQRIAGMITILDDVKTRIQKSQPVAKRSVAELRRCNTDLRPNRA-PRDK 105
             E  T  +  R+ ++I  + T +   ++  QK +   +R+  E++R    L   RA   DK
Sbjct:   926 ETRTAQEVKRRDEKIKQLETKMKQDQSERQKVEEERRRAEIEIQRIQQTLESERALALDK 985

Query:   106 K-LCEPITDDKEKLRRQLSASLAARKSLEVLCSSLGKEKEIMAGELARKVHELNEMEELI 164
             + + + + D + +L  +L+ ++A +++LE     L   K+    EL  +  +L +  E+I
Sbjct:   986 EEIFKRLQDREVELSEKLAGAIADQENLEDQLDELILAKKKTDEELDLRKTQLEQAGEII 1045

Query:   165 NDFKAQNASLLAKVQNCAAEHKEKKCSAGEIQGNAA-LQERNKALSEHLLKSLDGYRSLK 223
                +A+   +  K+++   +  E + SA E + +   L +  K L  HL       + L+
Sbjct:  1046 QRLEAERKEMQQKLEDLEQKLLEAQSSASETENHMRELGQEVKMLQSHLSLKERKLQDLE 1105

Query:   224 KKY-KYVKEENTAMRATMEELG---KKVEAGIDQILGFRQRIATKXXXXXXXXXXITALE 279
              K  K  ++ +  +  T +EL    K+V+  +D+    RQ+I+            +   E
Sbjct:  1106 AKLLKTDQDLDVKLAKTSKELDRSKKEVKDLLDENRTIRQQISDLSKTSTSYEEMLRRKE 1165

Query:   280 GMFDSFNMKIKKHIQNKSDCGKPKAPIN 307
                       KKH + K      K+ ++
Sbjct:  1166 SELTVLRNDAKKHAEEKKQLDVEKSNLS 1193

GO:0043936 "asexual sporulation resulting in formation of a cellular spore" evidence=IMP

GO:0003774 "motor activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0016459 "myosin complex" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

GO:0005826 "actomyosin contractile ring" evidence=IEA

GO:0032168 "hyphal septin ring" evidence=IDA

GO:0033205 "cell cycle cytokinesis" evidence=IEA

DICTYBASE|DDB_G0268498 DDB_G0268498 "unknown" [Dictyostelium discoideum (taxid:44689)]

 Score = 125 (49.1 bits), Expect = 0.00011, P = 0.00011
 Identities = 66/307 (21%), Positives = 143/307 (46%)

Query:    29 EGIAANVKLLLKLIQDHTEASTKDQDHRKPQRIAGMITILDDVKTRIQ----KSQPVAKR 84
             E +   +K L ++I +  E ST  Q+ +   R++     ++    +++    K   V   
Sbjct:   357 ERLREEIKRLNQVIDEERE-STSQQNEQYEGRLSSCNQEIESQSVQLKSLRGKVDEVC-H 414

Query:    85 SVAELRRCNTDLRPN----RAPRDK--KLCEPITDDKEKLRRQLS----ASLAARKSLEV 134
              ++ L+  + +L+ N    +A +++  +  E  T+D ++ + +LS    A++ + ++   
Sbjct:   415 LLSSLKAQHEELQSNYNVCKAEKEQLEQQLEESTNDVQEFKLKLSTAKSAAVESEQNFTA 474

Query:   135 LCSSLGKEKEIMAGELARKVHELNEMEELINDFKAQNASLLAKVQN-CAAEHKEKKCSAG 193
             + + L KEK I+  E+ R   E  + EE +   +A  A L+ ++Q+  ++  ++K+  A 
Sbjct:   475 MIAQLEKEKAIIKEEVLRATSEKEDTEENVKSLQASQAVLVTQLQDDISSLTRDKELLAL 534

Query:   194 EIQGNAALQERNKA--LSEHLLKSLDGYRSLKKKYKYVKEENTAMRATMEELGKKVEAGI 251
              +Q  A L ER +A  L E   K +   +S KK+   V+ +   +    + L ++V+  +
Sbjct:   535 SMQ-KATL-ERKEAVVLQEKAEKKMVEMQSEKKR---VERQFGDLERERDVLRQQVQIKV 589

Query:   252 DQILGFRQRIATKXXXXXXXXXXITALEG---MF-DSFNMKIKKHIQNKSDCGKPKAPIN 307
             D+I   ++ +             +  L G   MF D  N +++K+ ++ S+  K K  + 
Sbjct:   590 DEIQDVQKDLEWSRETVADLERRLVNLNGECQMFKDIKNKEVEKNKKSTSEESKSKNELE 649

Query:   308 ASKPSVL 314
               K   L
Sbjct:   650 QEKQKTL 656

GO:0008150 "biological_process" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0003674 "molecular_function" evidence=ND

GO:0044351 "macropinocytosis" evidence=RCA

UNIPROTKB|Q02224 CENPE "Centromere-associated protein E" [Homo sapiens (taxid:9606)]

 Score = 123 (48.4 bits), Expect = 0.00072, P = 0.00072
 Identities = 58/234 (24%), Positives = 103/234 (44%)

Query:    45 HTEASTKDQDHRKPQRIAGMITILD-DVKTRIQKSQPVAKRSVAELRRCNTDLRPNRAPR 103
             H E +T +      Q++ G+    D + K     +  V    + E +R    L   +   
Sbjct:   996 HMEENTGETKDEFQQKMVGIDKKQDLEAKNTQTLTADVKDNEIIEQQRKIFSLIQEKNEL 1055

Query:   104 DKKLCEPITDDKEKLRRQLSASLAA----RKSLEVLCSSLGKEKEIMA----------GE 149
              + L E +  +KE+L+  L  ++      ++ L +L   L K++EI+A          GE
Sbjct:  1056 QQML-ESVIAEKEQLKTDLKENIEMTIENQEELRLLGDELKKQQEIVAQEKNHAIKKEGE 1114

Query:   150 LARKVHELNEMEELINDFKAQNASLLAKVQNCAAEHKEKKCSAGEIQGNAALQERNKALS 209
             L+R    L E+EE + +   Q      ++ N   E  E +    EI+ N   + +NK L+
Sbjct:  1115 LSRTCDRLAEVEEKLKEKSQQLQEKQQQLLNVQEEMSEMQKKINEIE-NLKNELKNKELT 1173

Query:   210 -EHL-LKSLDGYRSLKKKYKYVKEENTAMRATMEELGKKVEAGIDQILGFRQRI 261
              EH+  + L+  + L + Y+ VK   T  R  ++EL K  E   D + G+ + I
Sbjct:  1174 LEHMETERLELAQKLNENYEEVKSI-TKERKVLKELQKSFETERDHLRGYIREI 1226

GO:0005875 "microtubule associated complex" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0007275 "multicellular organismal development" evidence=IEA

GO:0051301 "cell division" evidence=IEA

GO:0000778 "condensed nuclear chromosome kinetochore" evidence=IEA

GO:0005819 "spindle" evidence=IEA

GO:0000940 "condensed chromosome outer kinetochore" evidence=TAS

GO:0000776 "kinetochore" evidence=IDA

GO:0045860 "positive regulation of protein kinase activity" evidence=IMP

GO:0000779 "condensed chromosome, centromeric region" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0051382 "kinetochore assembly" evidence=NAS

GO:0003777 "microtubule motor activity" evidence=IMP

GO:0005874 "microtubule" evidence=IDA

GO:0043515 "kinetochore binding" evidence=IDA

GO:0005634 "nucleus" evidence=IMP

GO:0000775 "chromosome, centromeric region" evidence=IDA

GO:0007080 "mitotic metaphase plate congression" evidence=TAS

GO:0000089 "mitotic metaphase" evidence=TAS

GO:0007079 "mitotic chromosome movement towards spindle pole" evidence=TAS

GO:0000087 "M phase of mitotic cell cycle" evidence=TAS

GO:0000236 "mitotic prometaphase" evidence=TAS

GO:0000278 "mitotic cell cycle" evidence=TAS

GO:0005829 "cytosol" evidence=TAS

GO:0007018 "microtubule-based movement" evidence=TAS

GO:0007596 "blood coagulation" evidence=TAS

GO:0019886 "antigen processing and presentation of exogenous peptide antigen via MHC class II" evidence=TAS

GO:0005737 "cytoplasm" evidence=IDA

GO:0015630 "microtubule cytoskeleton" evidence=IDA

UNIPROTKB|P13648 LMNA "Lamin-A" [Gallus gallus (taxid:9031)]

 Score = 116 (45.9 bits), Expect = 0.00083, P = 0.00083
 Identities = 43/191 (22%), Positives = 90/191 (47%)

Query:    71 VKTRIQKSQPVAKRSVAELRRC-NTDLRPNRAPRDKKLCEPITDDKEKLRRQLSASLAAR 129
             ++ RI +S+ V  R V+ ++     +L   R     K  + +   KE+ R QL  S    
Sbjct:    58 LRLRITESEEVVSREVSGIKAAYEAELADAR-----KTLDSVA--KERARLQLELSKVRE 110

Query:   130 KSLEVLCSSLGKEKEIMAGELARKVHELNEMEELINDFKAQNASLLAKVQNCAAEHKEKK 189
             +  E+   +  KE +++A + AR    L ++E L+N  +A  ++ L + +N   E ++ +
Sbjct:   111 EHKELKARNAKKEADLLAAQ-AR----LKDLEALLNSKEAALSTALGEKRNLENEVRDLR 165

Query:   190 CSAGEIQGNAALQERNKALSEHLLKSLDGYRSLKKKYKYVKEENTAMRATMEELGKKVEA 249
                 +++G  AL E  K L + +L+ +D    L+   + ++ +       + E  ++ E 
Sbjct:   166 AQVAKLEG--ALSEAKKQLQDEMLRRVDAENRLQTLKEELEFQKNIYSEELRETKRRHET 223

Query:   250 GIDQILGFRQR 260
              + +I   RQ+
Sbjct:   224 RLVEIDNGRQQ 234


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.313   0.127   0.344    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      315       305   0.00098  115 3  11 23  0.44    34
                                                     33  0.45    37


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  5
  No. of states in DFA:  561 (60 KB)
  Total size of DFA:  177 KB (2104 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  33.07u 0.14s 33.21t   Elapsed:  00:00:01
  Total cpu time:  33.08u 0.14s 33.22t   Elapsed:  00:00:01
  Start:  Sat May 11 11:01:15 2013   End:  Sat May 11 11:01:16 2013

GO:0005198 "structural molecule activity" evidence=IEA

GO:0005882 "intermediate filament" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	315
TIGR02168	1179	TIGR02168, SMC_prok_B, chromosome segregation prot	3e-05
pfam09728	309	pfam09728, Taxilin, Myosin-like coiled-coil protei	8e-04

>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type

 Score = 45.4 bits (108), Expect = 3e-05
 Identities = 37/176 (21%), Positives = 76/176 (43%), Gaps = 8/176 (4%)

Query: 112 TDDKEKLRRQLSASLAARKSLEVLCSSLGKEKEIMAGELARKVHELNEMEELINDFKAQN 171
               E+LR +L       K  E     L  E + +  +L     E++E+EE I + + + 
Sbjct: 231 VLRLEELREELEELQEELKEAEEELEELTAELQELEEKLEELRLEVSELEEEIEELQKEL 290

Query: 172 ASLLAKVQNC---AAEHKEKKCSA-GEIQGNAALQERNKALSEHLLKSL----DGYRSLK 223
            +L  ++          +E+  +   +++   A  E  ++  + L + L    +    LK
Sbjct: 291 YALANEISRLEQQKQILRERLANLERQLEELEAQLEELESKLDELAEELAELEEKLEELK 350

Query: 224 KKYKYVKEENTAMRATMEELGKKVEAGIDQILGFRQRIATKEEQEVDIEEEITALE 279
           ++ + ++ E   + A +EEL  ++E   +Q+   R ++A  E Q   +  EI  LE
Sbjct: 351 EELESLEAELEELEAELEELESRLEELEEQLETLRSKVAQLELQIASLNNEIERLE 406

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1179

>gnl|CDD|220366 pfam09728, Taxilin, Myosin-like coiled-coil protein

 Score = 40.1 bits (94), Expect = 8e-04
 Identities = 51/239 (21%), Positives = 101/239 (42%), Gaps = 22/239 (9%)

Query: 59  QRIAGMITILDDVKTRIQKSQPVAKRSVAELRRCNTDLRPNRAPRDKKLCEPITDDKEKL 118
           Q ++ + T  + ++T I++        + E++R   DL+       +K  E +  +K+KL
Sbjct: 12  QSLSKLDTPEEKLETLIKR----LAELLKEMKRLEKDLKKL-----QKRGEQLQKEKDKL 62

Query: 119 RRQLSASLAARKSLEVLCSSLGKEKEIMAGELARKVHELNEMEELINDFKAQNASLLAKV 178
           + + S ++ AR  LE LC  L K  + +  E   +  E  E  + + +   +  S L  +
Sbjct: 63  QSEHSKAILARSKLESLCRELQKHNKTLKEENKARSDEEEEKRKELTE---KFQSTLKDI 119

Query: 179 QNCAAEHKEKKCSAGEIQGNAALQERNKALSEHL------LKSLDGYRSLKKKYKYVKEE 232
           Q+   EH          + N  L+E+ K L E         + L   + L+++    K E
Sbjct: 120 QDQMEEHSNPNHK--LCEENEELREKLKELIEQYELREQHFEKLLKTKDLEQQLNDAKLE 177

Query: 233 NTAMRATMEELGKKVEAGIDQILGFRQRIATKEEQEVDIEEEITALEGMFDSFNMKIKK 291
               +A  E+   K E   + +L    +++T +E E ++  ++      F  F   + K
Sbjct: 178 QAQEQAEQEQEKHKREK--EILLKEAAQVSTLKETEKELRAQLNLYSDKFKEFQDTLNK 234

Taxilin contains an extraordinarily long coiled-coil domain in its C-terminal half and is ubiquitously expressed. It is a novel binding partner of several syntaxin family members and is possibly involved in Ca2+-dependent exocytosis in neuroendocrine cells. Gamma-taxilin, described as leucine zipper protein Factor Inhibiting ATF4-mediated Transcription (FIAT), localises to the nucleus in osteoblasts and dimerises with ATF4 to form inactive dimers, thus inhibiting ATF4-mediated transcription. Length = 309

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	315
TIGR02169	1164	SMC_prok_A chromosome segregation protein SMC, pri	94.47
TIGR02169	1164	SMC_prok_A chromosome segregation protein SMC, pri	93.62
PHA02562	562	46 endonuclease subunit; Provisional	92.45
PRK04778	569	septation ring formation regulator EzrA; Provision	91.89
COG1196	1163	Smc Chromosome segregation ATPases [Cell division	91.5
PF07888	546	CALCOCO1: Calcium binding and coiled-coil domain (	91.15
TIGR02168	1179	SMC_prok_B chromosome segregation protein SMC, com	90.93
PF09730	717	BicD: Microtubule-associated protein Bicaudal-D; I	89.39
KOG0810	297	consensus SNARE protein Syntaxin 1 and related pro	89.06
TIGR02168	1179	SMC_prok_B chromosome segregation protein SMC, com	88.92
KOG4674	1822	consensus Uncharacterized conserved coiled-coil pr	88.82
PF09728	309	Taxilin: Myosin-like coiled-coil protein; InterPro	88.46
TIGR00606	1311	rad50 rad50. This family is based on the phylogeno	88.37
PF06160	560	EzrA: Septation ring formation regulator, EzrA ; I	88.01
PRK02224	880	chromosome segregation protein; Provisional	87.36
PHA02562	562	46 endonuclease subunit; Provisional	86.72
KOG0971	1243	consensus Microtubule-associated protein dynactin	86.46
COG4026	290	Uncharacterized protein containing TOPRIM domain,	86.27
PF10498	359	IFT57: Intra-flagellar transport protein 57 ; Inte	85.46
PF09726	697	Macoilin: Transmembrane protein; InterPro: IPR0191	84.73
KOG3684	489	consensus Ca2+-activated K+ channel proteins (inte	83.56
KOG0996	1293	consensus Structural maintenance of chromosome pro	83.09
COG1196	1163	Smc Chromosome segregation ATPases [Cell division	83.06
KOG0612	1317	consensus Rho-associated, coiled-coil containing p	81.77
PF00038	312	Filament: Intermediate filament protein; InterPro:	80.48

>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type

Probab=94.47  E-value=6.2  Score=39.87  Aligned_cols=68  Identities=15%  Similarity=0.202  Sum_probs=32.2

Q ss_pred             hhhHHHHHHhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccccccHHHHHHHHHhhhhh
Q 021279          217 DGYRSLKKKYKYVKEENTAMRATMEELGKKVEAGIDQILGFRQRIATKEEQEVDIEEEITALEGMFDS  284 (315)
Q Consensus       217 DgyRSlKrkyk~~qeEN~~i~~tme~~~~~V~aG~~~i~~fr~R~~~~~eq~~dIeeEisaLe~mfe~  284 (315)
                      .-+..++.++...+.+...+...++.+..++..--.++..+.+.+......--++++++..+...+..
T Consensus       427 ~~~~~l~~~~~~l~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~l~~~~~~l~~l~~~l~~l~~~~~~  494 (1164)
T TIGR02169       427 AAIAGIEAKINELEEEKEDKALEIKKQEWKLEQLAADLSKYEQELYDLKEEYDRVEKELSKLQRELAE  494 (1164)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33444555555555555555555555555554444445555444443333333344444444443333

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.

>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type

Probab=93.62  E-value=6.4  Score=39.75  Aligned_cols=9  Identities=11%  Similarity=0.231  Sum_probs=3.3

Q ss_pred             HHHHHHhhH
Q 021279          164 INDFKAQNA  172 (315)
Q Consensus       164 i~DlkAQN~  172 (315)
                      +.+++.+..
T Consensus       807 ~~~l~~~~~  815 (1164)
T TIGR02169       807 VSRIEARLR  815 (1164)
T ss_pred             HHHHHHHHH
Confidence            333333333

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.

>PHA02562 46 endonuclease subunit; Provisional

Probab=92.45  E-value=10  Score=36.03  Aligned_cols=78  Identities=12%  Similarity=0.180  Sum_probs=48.9

Q ss_pred             hhhhhHHHHHHhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccccccHHHHHHHHHhhhhhhcchhhhh
Q 021279          215 SLDGYRSLKKKYKYVKEENTAMRATMEELGKKVEAGIDQILGFRQRIATKEEQEVDIEEEITALEGMFDSFNMKIKKH  292 (315)
Q Consensus       215 SiDgyRSlKrkyk~~qeEN~~i~~tme~~~~~V~aG~~~i~~fr~R~~~~~eq~~dIeeEisaLe~mfe~~~mKi~kh  292 (315)
                      .++++....++|..++.+=..++..+......+..-.+++...+..+..-.....++++|+..|+.-++.+.-.+...
T Consensus       321 ~i~~~~~~~~~~~~~~~~i~el~~~i~~~~~~i~~~~~~~~~l~~ei~~l~~~~~~~~~~l~~l~~~l~~~~~~~~~~  398 (562)
T PHA02562        321 AIDELEEIMDEFNEQSKKLLELKNKISTNKQSLITLVDKAKKVKAAIEELQAEFVDNAEELAKLQDELDKIVKTKSEL  398 (562)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhchHHHHHHHHHHHHHHHHHHHHH
Confidence            344444555555555555555555555555555555666667777777777777778888888877777666555444

>PRK04778 septation ring formation regulator EzrA; Provisional

Probab=91.89  E-value=14  Score=36.64  Aligned_cols=112  Identities=16%  Similarity=0.253  Sum_probs=73.8

Q ss_pred             hhHhHHHHhhhccchhhhchHHHhhhhcCCCCCCCCCCcCCCCCCchHHHHHHHHHhHHHHHHHHHHHHHh-----hcch
Q 021279           67 ILDDVKTRIQKSQPVAKRSVAELRRCNTDLRPNRAPRDKKLCEPITDDKEKLRRQLSASLAARKSLEVLCS-----SLGK  141 (315)
Q Consensus        67 ILDdvk~RIqK~Qs~~krr~aeLRRCnTdLrp~~~P~DkKp~e~~~dekeklkkeL~ASlaArkSLe~mCS-----SLGK  141 (315)
                      ++++|-.-+..++..=...+.||+.=+.+|.-..-   .=+...+..+.+.|+.++...++.-.+|++.--     .+..
T Consensus       213 ~~~~iP~l~~~~~~~~P~ql~el~~gy~~m~~~gy---~~~~~~i~~~i~~l~~~i~~~~~~l~~l~l~~~~~~~~~i~~  289 (569)
T PRK04778        213 IMEEIPELLKELQTELPDQLQELKAGYRELVEEGY---HLDHLDIEKEIQDLKEQIDENLALLEELDLDEAEEKNEEIQE  289 (569)
T ss_pred             HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHcCC---CCCCCChHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHH
Confidence            44555555555666544678889888888876654   223456788999999999998887777665322     2222


Q ss_pred             ---------hhhHhHHHHHHHhhhhhhHHHHHHHHHHhhHHHHHHHHHhHH
Q 021279          142 ---------EKEIMAGELARKVHELNEMEELINDFKAQNASLLAKVQNCAA  183 (315)
Q Consensus       142 ---------EKeIMA~ElaRKv~ELnemEeli~DlkAQN~~Ll~K~q~~a~  183 (315)
                               |||+-|..-+  -+....+++.+..++.||..|...++.-..
T Consensus       290 ~Id~Lyd~lekE~~A~~~v--ek~~~~l~~~l~~~~e~~~~l~~Ei~~l~~  338 (569)
T PRK04778        290 RIDQLYDILEREVKARKYV--EKNSDTLPDFLEHAKEQNKELKEEIDRVKQ  338 (569)
T ss_pred             HHHHHHHHHHHHHHHHHHH--HHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                     2333333222  234556788889999999999888876654

>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]

Probab=91.50  E-value=17  Score=39.03  Aligned_cols=65  Identities=25%  Similarity=0.285  Sum_probs=36.1

Q ss_pred             chHHHHHHHHHhHHHHHHHHHHHHHhhcchhhhH-------hHHHHHHHhhhhhhHHHHHHHHHHhhHHHHH
Q 021279          112 TDDKEKLRRQLSASLAARKSLEVLCSSLGKEKEI-------MAGELARKVHELNEMEELINDFKAQNASLLA  176 (315)
Q Consensus       112 ~dekeklkkeL~ASlaArkSLe~mCSSLGKEKeI-------MA~ElaRKv~ELnemEeli~DlkAQN~~Ll~  176 (315)
                      ..+.+.++.++.+-....+.++--++++-.|.+.       .-.++...-.+++..++-+.++++..+.+-.
T Consensus       715 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~  786 (1163)
T COG1196         715 ERQLEELKRELAALEEELEQLQSRLEELEEELEELEEELEELQERLEELEEELESLEEALAKLKEEIEELEE  786 (1163)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4445566666665555656666666665555544       3334455555555555555555555555443

>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT)

Probab=91.15  E-value=18  Score=37.40  Aligned_cols=162  Identities=17%  Similarity=0.230  Sum_probs=85.9

Q ss_pred             HHHHHHHHHhHHHHHHHHHHHHHhhcchhhhHhHHHHHHHhhhhhhHHHHHHHHHHhhHHHHHHHHHhHHhhhhhccccc
Q 021279          114 DKEKLRRQLSASLAARKSLEVLCSSLGKEKEIMAGELARKVHELNEMEELINDFKAQNASLLAKVQNCAAEHKEKKCSAG  193 (315)
Q Consensus       114 ekeklkkeL~ASlaArkSLe~mCSSLGKEKeIMA~ElaRKv~ELnemEeli~DlkAQN~~Ll~K~q~~a~e~k~~~~s~~  193 (315)
                      ..++..++...-+.+...|+--|.+|.++.+-|-++|...-.+...++.-..++...++.|-........+..+.     
T Consensus       144 qlE~~qkE~eeL~~~~~~Le~e~~~l~~~v~~l~~eL~~~~ee~e~L~~~~kel~~~~e~l~~E~~~L~~q~~e~-----  218 (546)
T PF07888_consen  144 QLEECQKEKEELLKENEQLEEEVEQLREEVERLEAELEQEEEEMEQLKQQQKELTESSEELKEERESLKEQLAEA-----  218 (546)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----
Confidence            345666777777788888888888888888888888877766666665555555555554433222211111100     


Q ss_pred             ccccchhhHHhhHHHHHHHH---hhhhhhHH-----------HHHHhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021279          194 EIQGNAALQERNKALSEHLL---KSLDGYRS-----------LKKKYKYVKEENTAMRATMEELGKKVEAGIDQILGFRQ  259 (315)
Q Consensus       194 e~~gN~aLq~RNkaLSeqLl---KSiDgyRS-----------lKrkyk~~qeEN~~i~~tme~~~~~V~aG~~~i~~fr~  259 (315)
                       ..--..|.+..+.|..+..   +-++++..           ||.+++....+=..-..+......+..+=-++|+..++
T Consensus       219 -~~ri~~LEedi~~l~qk~~E~e~~~~~lk~~~~elEq~~~eLk~rLk~~~~~~~~~~~~~~~~~~e~e~LkeqLr~~qe  297 (546)
T PF07888_consen  219 -RQRIRELEEDIKTLTQKEKEQEKELDKLKELKAELEQLEAELKQRLKETVVQLKQEETQAQQLQQENEALKEQLRSAQE  297 (546)
T ss_pred             -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHH
Confidence             0000122222333322221   11222221           22222222111111122233445566667777888888


Q ss_pred             hhhhhccccccHHHHHHHHHhh
Q 021279          260 RIATKEEQEVDIEEEITALEGM  281 (315)
Q Consensus       260 R~~~~~eq~~dIeeEisaLe~m  281 (315)
                      ++..+..+.+-..+|++.+-.+
T Consensus       298 ~lqaSqq~~~~L~~EL~~~~~~  319 (546)
T PF07888_consen  298 QLQASQQEAELLRKELSDAVNV  319 (546)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHH
Confidence            8888877777777887766544

This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].

>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type

Probab=90.93  E-value=19  Score=36.16  Aligned_cols=9  Identities=22%  Similarity=0.538  Sum_probs=3.5

Q ss_pred             HHHHHHHHH
Q 021279          114 DKEKLRRQL  122 (315)
Q Consensus       114 ekeklkkeL  122 (315)
                      +.+.+++++
T Consensus       678 e~~~l~~~~  686 (1179)
T TIGR02168       678 EIEELEEKI  686 (1179)
T ss_pred             HHHHHHHHH
Confidence            333344333

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.

>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []

Probab=89.39  E-value=32  Score=36.52  Aligned_cols=115  Identities=26%  Similarity=0.287  Sum_probs=60.8

Q ss_pred             CCCchHHHHHHHHHhHHHHHHHHHHHHHhhcchhhhHhHHHHHHHhhhhhhHHHHHHHHHHhhHHHHHHHHHhHH----h
Q 021279          109 EPITDDKEKLRRQLSASLAARKSLEVLCSSLGKEKEIMAGELARKVHELNEMEELINDFKAQNASLLAKVQNCAA----E  184 (315)
Q Consensus       109 e~~~dekeklkkeL~ASlaArkSLe~mCSSLGKEKeIMA~ElaRKv~ELnemEeli~DlkAQN~~Ll~K~q~~a~----e  184 (315)
                      |--..|++||++||.--= .-|+  .+++.|    +---..|----++|+++.+=|+-|.+|...|.. +|....    +
T Consensus       261 El~~~EiqKL~qQL~qve-~EK~--~L~~~L----~e~Q~qLe~a~~als~q~eki~~L~e~l~aL~~-l~~~ke~~~~~  332 (717)
T PF09730_consen  261 ELNLSEIQKLKQQLLQVE-REKS--SLLSNL----QESQKQLEHAQGALSEQQEKINRLTEQLDALRK-LQEDKEQQSAE  332 (717)
T ss_pred             hcchHHHHHHHHHHHHHh-hHHH--HHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-hccchhhhhhh
Confidence            444679999999995321 1111  122222    111223333346788888888888888666544 443322    1


Q ss_pred             h-hhhccc-------ccccccchhhHHhhHHHHHHHHhhhhhhHHHHHHhHHHHH
Q 021279          185 H-KEKKCS-------AGEIQGNAALQERNKALSEHLLKSLDGYRSLKKKYKYVKE  231 (315)
Q Consensus       185 ~-k~~~~s-------~~e~~gN~aLq~RNkaLSeqLlKSiDgyRSlKrkyk~~qe  231 (315)
                      . .+-.+|       ++++.|+..|+.+-+..-.++...-+-+..||-+|...++
T Consensus       333 d~~~~~~s~~d~~~ye~Di~~~eiLe~Ky~vav~Ev~~Lk~ELk~Lk~k~~~~~~  387 (717)
T PF09730_consen  333 DSEKERDSHEDGDYYEVDINGLEILECKYKVAVSEVIQLKAELKALKSKYNELEE  387 (717)
T ss_pred             hcccccccccccchhhhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            1 111222       2334556667777666666665555555555555554443

Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus

>KOG0810 consensus SNARE protein Syntaxin 1 and related proteins [Intracellular trafficking, secretion, and vesicular transport]

Probab=89.06  E-value=13  Score=35.39  Aligned_cols=68  Identities=18%  Similarity=0.345  Sum_probs=47.4

Q ss_pred             hHHHHHHHHHHhhHHHHHHHHHhHH--hhhhhcccccccccchhhHHhhHHHHHHHHhhhhhhHHHHHHhHH
Q 021279          159 EMEELINDFKAQNASLLAKVQNCAA--EHKEKKCSAGEIQGNAALQERNKALSEHLLKSLDGYRSLKKKYKY  228 (315)
Q Consensus       159 emEeli~DlkAQN~~Ll~K~q~~a~--e~k~~~~s~~e~~gN~aLq~RNkaLSeqLlKSiDgyRSlKrkyk~  228 (315)
                      .|+.++.+++++..++-.||-+.-.  ++.+..+  +-..++..=+.|-.++|-.|.+.+..|+.+.-+|++
T Consensus        79 ~l~~~~~~~~~~a~~Ik~kL~~~e~~~~~~~~~~--~~~~~~r~rrtq~~~~~kkf~~~M~~f~~~~~~~r~  148 (297)
T KOG0810|consen   79 KLESLVDEIRRRARKIKTKLKALEKENEADETQN--RSSAGLRTRRTQTSALSKKLKELMNEFNRTQSKYRE  148 (297)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccC--CCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            5677777777777777777765543  2222211  333455566678889999999999999999888875

>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type

Probab=88.92  E-value=27  Score=35.05  Aligned_cols=17  Identities=18%  Similarity=0.249  Sum_probs=7.4

Q ss_pred             cchhhhhhhHHHHHHHH
Q 021279           26 LSFEGIAANVKLLLKLI   42 (315)
Q Consensus        26 ~slEGiatNvKLLLKLi   42 (315)
                      |.+.|-.++.+-+..++
T Consensus       112 ~~~~~~~~~~~~~~~~l  128 (1179)
T TIGR02168       112 YFINGQPCRLKDIQDLF  128 (1179)
T ss_pred             eeECCCcccHHHHHHHH
Confidence            44555444433334443

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.

>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]

Probab=88.82  E-value=20  Score=41.62  Aligned_cols=166  Identities=23%  Similarity=0.267  Sum_probs=109.4

Q ss_pred             chHHHHHHHHHhHHHHHHHHHHHHHhhcchhhhHhHHHHHHHhhhhhhHHHHHHHHHHhhHHHHHHH-------HHhHHh
Q 021279          112 TDDKEKLRRQLSASLAARKSLEVLCSSLGKEKEIMAGELARKVHELNEMEELINDFKAQNASLLAKV-------QNCAAE  184 (315)
Q Consensus       112 ~dekeklkkeL~ASlaArkSLe~mCSSLGKEKeIMA~ElaRKv~ELnemEeli~DlkAQN~~Ll~K~-------q~~a~e  184 (315)
                      -.+..+++.+++...-|.       |.+-++|-+|-..+-|+-.||......++||.-|+..+-.++       |.+..+
T Consensus       100 ~~~~~~~~~~~~~l~~~~-------se~~~qkr~l~~~le~~~~ele~l~~~n~~l~~ql~ss~~~~~e~e~r~~e~~s~  172 (1822)
T KOG4674|consen  100 SWEIDALKLENSQLRRAK-------SELQEQKRQLMELLERQKAELEALESENKDLNDQLKSSTKTLSELEARLQETQSE  172 (1822)
T ss_pred             HHHHHHhhhhhHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344555555555444433       445588999999999999999999999999999987765543       333332


Q ss_pred             hhhhcccc----cccccchhhHHhhHHHHHHHHhhhhhhHHHHHH----h--------------HHHHHHhHHHHHHHHH
Q 021279          185 HKEKKCSA----GEIQGNAALQERNKALSEHLLKSLDGYRSLKKK----Y--------------KYVKEENTAMRATMEE  242 (315)
Q Consensus       185 ~k~~~~s~----~e~~gN~aLq~RNkaLSeqLlKSiDgyRSlKrk----y--------------k~~qeEN~~i~~tme~  242 (315)
                      .-   ++.    .=.|.+.+|+-=|+-||..|.+.-|.|=++.|.    |              ...++-|-.+....++
T Consensus       173 ~v---s~q~k~~rl~QEksll~s~~~wL~~eL~~~~ekll~~~re~s~~~~~L~~~L~~~~~~~~~~q~~~~~l~q~~~e  249 (1822)
T KOG4674|consen  173 DV---SSQLKEERLEQEKSLLESENKWLSRELSKVNEKLLSLRREHSIEVEQLEEKLSDLKESLAELQEKNKSLKQQNEE  249 (1822)
T ss_pred             HH---HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            11   011    113788899999999999999999999888887    2              3333344444455555


Q ss_pred             HHHHHHHHHHHHHHHHHhhhhhccccccHHHHHHHHHhhhhhhcchhh
Q 021279          243 LGKKVEAGIDQILGFRQRIATKEEQEVDIEEEITALEGMFDSFNMKIK  290 (315)
Q Consensus       243 ~~~~V~aG~~~i~~fr~R~~~~~eq~~dIeeEisaLe~mfe~~~mKi~  290 (315)
                      +...|.--..-|-..++--.+.   ..-.+.||++=.+||+-|.=+..
T Consensus       250 Ls~~ie~~~~~ls~~k~t~~s~---~~kf~~El~~q~kL~eL~ks~~e  294 (1822)
T KOG4674|consen  250 LSKKIESLNLELSKLKDTAESS---EEKFEKELSTQKKLNELWKSKLE  294 (1822)
T ss_pred             HHHHHHHHHHHHHHHHhhhHHH---HHHHHHHHHHHHHHHHHHHHHHH
Confidence            5555555555566666633333   33477888888888877655443

>PF09728 Taxilin: Myosin-like coiled-coil protein; InterPro: IPR019132 Taxilin contains an extraordinarily long coiled-coil domain in its C-terminal half and is ubiquitously expressed

Probab=88.46  E-value=22  Score=33.42  Aligned_cols=99  Identities=27%  Similarity=0.414  Sum_probs=67.7

Q ss_pred             CCCchHHHHHHHHHhHHHHHHHHHHHHHhhcchhhhHhHHHHHHHhhhhhhHHHHHHHHHHhhHHHHHHHHHhHHhhhhh
Q 021279          109 EPITDDKEKLRRQLSASLAARKSLEVLCSSLGKEKEIMAGELARKVHELNEMEELINDFKAQNASLLAKVQNCAAEHKEK  188 (315)
Q Consensus       109 e~~~dekeklkkeL~ASlaArkSLe~mCSSLGKEKeIMA~ElaRKv~ELnemEeli~DlkAQN~~Ll~K~q~~a~e~k~~  188 (315)
                      +...-+++.+..+++....++.-||-+|--|-+.-..+--|--+...+-   ++-=.++-+.-...|.-||....++...
T Consensus        53 ~~l~kek~~l~~E~~k~~~~k~KLE~LCRELQk~Nk~lkeE~~~~~~ee---e~kR~el~~kFq~~L~dIq~~~ee~~~~  129 (309)
T PF09728_consen   53 EQLQKEKDQLQSELSKAILAKSKLESLCRELQKQNKKLKEESKRRAREE---EEKRKELSEKFQATLKDIQAQMEEQSER  129 (309)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHhccch
Confidence            4446688899999999999999999999999998777766665554433   3333344455566778888888877743


Q ss_pred             cccccccccchhhHHhhHHHHHHH
Q 021279          189 KCSAGEIQGNAALQERNKALSEHL  212 (315)
Q Consensus       189 ~~s~~e~~gN~aLq~RNkaLSeqL  212 (315)
                      +..  ..+-|..|+++-|.|.+|.
T Consensus       130 ~~k--~~~eN~~L~eKlK~l~eQy  151 (309)
T PF09728_consen  130 NIK--LREENEELREKLKSLIEQY  151 (309)
T ss_pred             hHH--HHHHHHHHHHHHHHHHHHH
Confidence            222  3455666666666655554

It is a novel binding partner of several syntaxin family members and is possibly involved in Ca(2+)-dependent exocytosis in neuroendocrine cells []. Gamma-taxilin, described as leucine zipper protein Factor Inhibiting ATF4-mediated Transcription (FIAT), localises to the nucleus in osteoblasts and dimerises with ATF4 to form inactive dimers, thus inhibiting ATF4-mediated transcription [].

>TIGR00606 rad50 rad50

Probab=88.37  E-value=39  Score=36.88  Aligned_cols=82  Identities=22%  Similarity=0.248  Sum_probs=57.2

Q ss_pred             HHhhhhhhHHH--HHHhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccccccHHHHHHHH--Hhhhhhhcc
Q 021279          212 LLKSLDGYRSL--KKKYKYVKEENTAMRATMEELGKKVEAGIDQILGFRQRIATKEEQEVDIEEEITAL--EGMFDSFNM  287 (315)
Q Consensus       212 LlKSiDgyRSl--Krkyk~~qeEN~~i~~tme~~~~~V~aG~~~i~~fr~R~~~~~eq~~dIeeEisaL--e~mfe~~~m  287 (315)
                      |.+.|+.|-..  -+.++..+.+-..+..+++++..++......|...++.+.......-++...|+-+  +.-+..+..
T Consensus       956 ~~~~i~~y~~~~~~~qL~~~e~el~~~~~~ie~le~e~~~l~~~i~~l~kel~~~~~~kr~l~dnL~~~~~~~~l~el~~ 1035 (1311)
T TIGR00606       956 YMKDIENKIQDGKDDYLKQKETELNTVNAQLEECEKHQEKINEDMRLMRQDIDTQKIQERWLQDNLTLRKRENELKEVEE 1035 (1311)
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            45556666543  44566666666667788888888888888888888888887777777777777777  555666555


Q ss_pred             hhhhhc
Q 021279          288 KIKKHI  293 (315)
Q Consensus       288 Ki~kh~  293 (315)
                      .|....
T Consensus      1036 eI~~l~ 1041 (1311)
T TIGR00606      1036 ELKQHL 1041 (1311)
T ss_pred             HHHHHH
Confidence            555433

This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site

Probab=88.01  E-value=31  Score=34.54  Aligned_cols=211  Identities=17%  Similarity=0.235  Sum_probs=116.3

Q ss_pred             hhHhHHHHhhhccchhhhchHHHhhhhcCCCCCCCCCCcCCCCCCchHHHHHHHHHhHHHHHHHHHHHHHhh--------
Q 021279           67 ILDDVKTRIQKSQPVAKRSVAELRRCNTDLRPNRAPRDKKLCEPITDDKEKLRRQLSASLAARKSLEVLCSS--------  138 (315)
Q Consensus        67 ILDdvk~RIqK~Qs~~krr~aeLRRCnTdLrp~~~P~DkKp~e~~~dekeklkkeL~ASlaArkSLe~mCSS--------  138 (315)
                      ++++|-.-+..++..=...+.||+-=+-.+.-..-   .=+...+..+.+.++.+|...++.-+.|++---+        
T Consensus       209 ~~e~IP~l~~~l~~~~P~ql~eL~~gy~~m~~~gy---~l~~~~i~~~i~~i~~~l~~~~~~L~~l~l~~~~~~~~~i~~  285 (560)
T PF06160_consen  209 IMEDIPKLYKELQKEFPDQLEELKEGYREMEEEGY---YLEHLDIEEEIEQIEEQLEEALALLKNLELDEVEEENEEIEE  285 (560)
T ss_pred             HHHHhHHHHHHHHHHhHHHHHHHHHHHHHHHHCCC---CCCCCCHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            45555555555555555567777777766665543   2244567889999999999999877766543221        


Q ss_pred             -cchhhhHhHHHHHHH---hhhhhhHHHHHHHHHHhhHHHHHHHHHhHHhhhhhcccccccccchhhHHhhHHHHHHHHh
Q 021279          139 -LGKEKEIMAGELARK---VHELNEMEELINDFKAQNASLLAKVQNCAAEHKEKKCSAGEIQGNAALQERNKALSEHLLK  214 (315)
Q Consensus       139 -LGKEKeIMA~ElaRK---v~ELnemEeli~DlkAQN~~Ll~K~q~~a~e~k~~~~s~~e~~gN~aLq~RNkaLSeqLlK  214 (315)
                       +-.=-++|-.|+.-+   .+.+..+.++|..++.||..|...+......-.   -+..+.+.-..++.+-+.|..++..
T Consensus       286 ~Id~lYd~le~E~~Ak~~V~~~~~~l~~~l~~~~~~~~~l~~e~~~v~~sY~---L~~~e~~~~~~l~~~l~~l~~~~~~  362 (560)
T PF06160_consen  286 RIDQLYDILEKEVEAKKYVEKNLKELYEYLEHAKEQNKELKEELERVSQSYT---LNHNELEIVRELEKQLKELEKRYED  362 (560)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC---CCchHHHHHHHHHHHHHHHHHHHHH
Confidence             111112333333221   235678889999999999999988876554110   1122333333444444444443333


Q ss_pred             hhhhhHHHHHHhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccccccHHHHHHHHHhhhh
Q 021279          215 SLDGYRSLKKKYKYVKEENTAMRATMEELGKKVEAGIDQILGFRQRIATKEEQEVDIEEEITALEGMFD  283 (315)
Q Consensus       215 SiDgyRSlKrkyk~~qeEN~~i~~tme~~~~~V~aG~~~i~~fr~R~~~~~eq~~dIeeEisaLe~mfe  283 (315)
                      -.+.--.=+.-|-.++++=..+...|+++..+...-.+.+.++|..=....+.--.++.+|+...+..+
T Consensus       363 ~~~~i~~~~~~yS~i~~~l~~~~~~l~~ie~~q~~~~~~l~~L~~dE~~Ar~~l~~~~~~l~~ikR~le  431 (560)
T PF06160_consen  363 LEERIEEQQVPYSEIQEELEEIEEQLEEIEEEQEEINESLQSLRKDEKEAREKLQKLKQKLREIKRRLE  431 (560)
T ss_pred             HHHHHHcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            332222223335555555556666666666666666666666665333333333334444444444333

EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane

>PRK02224 chromosome segregation protein; Provisional

Probab=87.36  E-value=35  Score=34.67  Aligned_cols=17  Identities=12%  Similarity=0.257  Sum_probs=7.4

Q ss_pred             chhhhhhHHhhHhHHHHh
Q 021279           58 PQRIAGMITILDDVKTRI   75 (315)
Q Consensus        58 ~qRvagMmtILDdvk~RI   75 (315)
                      +.++.|+ ..|++++.++
T Consensus       155 i~~l~~l-~~~e~~~~~~  171 (880)
T PRK02224        155 IDDLLQL-GKLEEYRERA  171 (880)
T ss_pred             HHHHhCC-HHHHHHHHHH
Confidence            3344444 3444444443

>PHA02562 46 endonuclease subunit; Provisional

Probab=86.72  E-value=29  Score=32.95  Aligned_cols=25  Identities=4%  Similarity=0.270  Sum_probs=13.0

Q ss_pred             hhhhhHHHHHHHHHHhhHHHHHHHH
Q 021279          155 HELNEMEELINDFKAQNASLLAKVQ  179 (315)
Q Consensus       155 ~ELnemEeli~DlkAQN~~Ll~K~q  179 (315)
                      +++...++.+.++..|-.+|-.++.
T Consensus       299 ~~~~~l~d~i~~l~~~l~~l~~~i~  323 (562)
T PHA02562        299 DRITKIKDKLKELQHSLEKLDTAID  323 (562)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3444444555555555555555544

>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]

Probab=86.46  E-value=8.2  Score=42.74  Aligned_cols=71  Identities=30%  Similarity=0.339  Sum_probs=48.3

Q ss_pred             chhhHHhhHHHHHHHHhhhhhhHHHHHHhHHHHHHhHHHHHHHHHHHHHHHHHHHH-HHHHHHhhhhhccccccHHHHHH
Q 021279          198 NAALQERNKALSEHLLKSLDGYRSLKKKYKYVKEENTAMRATMEELGKKVEAGIDQ-ILGFRQRIATKEEQEVDIEEEIT  276 (315)
Q Consensus       198 N~aLq~RNkaLSeqLlKSiDgyRSlKrkyk~~qeEN~~i~~tme~~~~~V~aG~~~-i~~fr~R~~~~~eq~~dIeeEis  276 (315)
                      |.-|++-|+.|---|-+-||----      -++|-|++++++++-+     +-.|| |.+||++++.-++|--+...+-+
T Consensus       481 ~EQL~Esn~ele~DLreEld~~~g------~~kel~~r~~aaqet~-----yDrdqTI~KfRelva~Lqdqlqe~~dq~~  549 (1243)
T KOG0971|consen  481 NEQLQESNRELELDLREELDMAKG------ARKELQKRVEAAQETV-----YDRDQTIKKFRELVAHLQDQLQELTDQQE  549 (1243)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhh------HHHHHHHHHHHHHHHH-----HhHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence            456777788887778888874311      1245667777776654     34566 99999999999888666655554


Q ss_pred             HHH
Q 021279          277 ALE  279 (315)
Q Consensus       277 aLe  279 (315)
                      .+|
T Consensus       550 Sse  552 (1243)
T KOG0971|consen  550 SSE  552 (1243)
T ss_pred             hhH
Confidence            444

>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]

Probab=86.27  E-value=2.8  Score=40.07  Aligned_cols=71  Identities=25%  Similarity=0.331  Sum_probs=48.7

Q ss_pred             HHHHHHHhhhhh---hHHH-------HHHhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccccccHHHHHH
Q 021279          207 ALSEHLLKSLDG---YRSL-------KKKYKYVKEENTAMRATMEELGKKVEAGIDQILGFRQRIATKEEQEVDIEEEIT  276 (315)
Q Consensus       207 aLSeqLlKSiDg---yRSl-------Krkyk~~qeEN~~i~~tme~~~~~V~aG~~~i~~fr~R~~~~~eq~~dIeeEis  276 (315)
                      ||--.=||+|-|   |-.|       |-|+.+.++||..++.-++++.-++++|-+||.+++              -|-|
T Consensus       115 AlvRAGLktL~~v~~~~d~ke~~ee~kekl~E~~~EkeeL~~eleele~e~ee~~erlk~le--------------~E~s  180 (290)
T COG4026         115 ALVRAGLKTLQRVPEYMDLKEDYEELKEKLEELQKEKEELLKELEELEAEYEEVQERLKRLE--------------VENS  180 (290)
T ss_pred             HHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHH
Confidence            444444566653   3334       455566667999999999999999999999988754              4556


Q ss_pred             HHHhhhhhhcchhhh
Q 021279          277 ALEGMFDSFNMKIKK  291 (315)
Q Consensus       277 aLe~mfe~~~mKi~k  291 (315)
                      .||.||..+.=++.+
T Consensus       181 ~LeE~~~~l~~ev~~  195 (290)
T COG4026         181 RLEEMLKKLPGEVYD  195 (290)
T ss_pred             HHHHHHHhchhHHHH
Confidence            666666655544443

>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms

Probab=85.46  E-value=25  Score=34.05  Aligned_cols=90  Identities=17%  Similarity=0.299  Sum_probs=67.1

Q ss_pred             hhHHhhHHHHHHHHhhhhhhHHHHHHhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh------hccccccHHH
Q 021279          200 ALQERNKALSEHLLKSLDGYRSLKKKYKYVKEENTAMRATMEELGKKVEAGIDQILGFRQRIAT------KEEQEVDIEE  273 (315)
Q Consensus       200 aLq~RNkaLSeqLlKSiDgyRSlKrkyk~~qeEN~~i~~tme~~~~~V~aG~~~i~~fr~R~~~------~~eq~~dIee  273 (315)
                      .++-|-|.|..||.-.+..||+.++++..++++=.....++.+...+.+-=.+++...++-|..      ..-.-|.|+.
T Consensus       256 kI~sREk~iN~qle~l~~eYr~~~~~ls~~~~~y~~~s~~V~~~t~~L~~IseeLe~vK~emeerg~~mtD~sPlv~IKq  335 (359)
T PF10498_consen  256 KIESREKYINNQLEPLIQEYRSAQDELSEVQEKYKQASEGVSERTRELAEISEELEQVKQEMEERGSSMTDGSPLVKIKQ  335 (359)
T ss_pred             HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHH
Confidence            4678999999999999999999999999999988877777777776666656666666655432      2222347887


Q ss_pred             HHHHHHhhhhhhcchh
Q 021279          274 EITALEGMFDSFNMKI  289 (315)
Q Consensus       274 EisaLe~mfe~~~mKi  289 (315)
                      =|+.|..=...++++|
T Consensus       336 Al~kLk~EI~qMdvrI  351 (359)
T PF10498_consen  336 ALTKLKQEIKQMDVRI  351 (359)
T ss_pred             HHHHHHHHHHHhhhhh
Confidence            7777776666666665

Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.

>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes

Probab=84.73  E-value=45  Score=35.04  Aligned_cols=60  Identities=20%  Similarity=0.294  Sum_probs=36.3

Q ss_pred             HHHHHhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccccccHHHHHHHHHhhhh
Q 021279          221 SLKKKYKYVKEENTAMRATMEELGKKVEAGIDQILGFRQRIATKEEQEVDIEEEITALEGMFD  283 (315)
Q Consensus       221 SlKrkyk~~qeEN~~i~~tme~~~~~V~aG~~~i~~fr~R~~~~~eq~~dIeeEisaLe~mfe  283 (315)
                      ++|.+-++...|=..+|+-|..-.+.+..--..++.+|...   .|...|+|.=+++|-.|=|
T Consensus       542 ~~r~r~~~lE~E~~~lr~elk~kee~~~~~e~~~~~lr~~~---~e~~~~~e~L~~aL~amqd  601 (697)
T PF09726_consen  542 SCRQRRRQLESELKKLRRELKQKEEQIRELESELQELRKYE---KESEKDTEVLMSALSAMQD  601 (697)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---hhhhhhHHHHHHHHHHHHH
Confidence            45666666666666666666665555555545455555522   3344578877888776643

; GO: 0016021 integral to membrane

>KOG3684 consensus Ca2+-activated K+ channel proteins (intermediate/small conductance classes) [Inorganic ion transport and metabolism]

Probab=83.56  E-value=34  Score=35.25  Aligned_cols=126  Identities=22%  Similarity=0.373  Sum_probs=88.1

Q ss_pred             hHHHHHHHhhhhhhHHHHHHHHHHhhHHHHHHHHHhHHh--------hhhhcccccccccchhhHHhhHHHHHHHHhhhh
Q 021279          146 MAGELARKVHELNEMEELINDFKAQNASLLAKVQNCAAE--------HKEKKCSAGEIQGNAALQERNKALSEHLLKSLD  217 (315)
Q Consensus       146 MA~ElaRKv~ELnemEeli~DlkAQN~~Ll~K~q~~a~e--------~k~~~~s~~e~~gN~aLq~RNkaLSeqLlKSiD  217 (315)
                      .-+=+|||. ||+..|.-|++|-+.+. |-..+.|-||.        +|-.+  .+.--+    +.|-+.---++|.+|-
T Consensus       332 lvAvisRKL-eLt~aEKhVhNFMmDtq-LTk~~KnAAA~VLqeTW~i~K~tr--l~~k~~----~~rlR~hQRkfL~AI~  403 (489)
T KOG3684|consen  332 LVAVIARKL-ELTKAEKHVHNFMMDTQ-LTKEHKNAAANVLQETWLIYKHTK--LVSKGD----QARLRKHQRKFLQAIH  403 (489)
T ss_pred             HHHHHHHHH-HHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhh--hhcccc----hHHHHHHHHHHHHHHH
Confidence            567789996 89999999999976542 33444444442        11110  111111    3455666778999999


Q ss_pred             hhHHHHHHhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccccccHHHHHHHHHhhhhhhcchhh
Q 021279          218 GYRSLKKKYKYVKEENTAMRATMEELGKKVEAGIDQILGFRQRIATKEEQEVDIEEEITALEGMFDSFNMKIK  290 (315)
Q Consensus       218 gyRSlKrkyk~~qeEN~~i~~tme~~~~~V~aG~~~i~~fr~R~~~~~eq~~dIeeEisaLe~mfe~~~mKi~  290 (315)
                      -+||.|.+.+...|.    -.+|-+++.-.+.--|.|...++   +.+    ++|+-|+.||+-.+.+.+-+.
T Consensus       404 ~fR~Vk~~qRkl~e~----~nsl~d~aK~~~~myd~~~~l~~---~q~----~le~qI~~Le~kl~~l~~~l~  465 (489)
T KOG3684|consen  404 QFRSVKWEQRKLSEQ----ANSLVDLAKTQNDMYDLLQELHS---RQE----ELEKQIDTLESKLEALTASLS  465 (489)
T ss_pred             HHHHHHHHHHHHHhh----cccHHHHHHHHHHHHHHHHHHHH---HHH----HHHHHHHHHHHHHHHHHHHHH
Confidence            999999998887764    35677788888888888998888   344    589999999988877655443

>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]

Probab=83.09  E-value=59  Score=36.97  Aligned_cols=149  Identities=22%  Similarity=0.304  Sum_probs=75.9

Q ss_pred             CCCchHHHHHHHHHhHHHHHHHHHHHHHhhcchhhhHhHHHHHHHhhhhhh----HHHHHHHHHHhhHHHHHHHHHhHHh
Q 021279          109 EPITDDKEKLRRQLSASLAARKSLEVLCSSLGKEKEIMAGELARKVHELNE----MEELINDFKAQNASLLAKVQNCAAE  184 (315)
Q Consensus       109 e~~~dekeklkkeL~ASlaArkSLe~mCSSLGKEKeIMA~ElaRKv~ELne----mEeli~DlkAQN~~Ll~K~q~~a~e  184 (315)
                      ...+++-++|.++|+--                  ..+|.++.-.+|++.|    ..+-|.+|+-+-+++.+.+|.++..
T Consensus       774 ~~s~~~v~~le~~l~~~------------------~~~~~~~~~~~~~~ee~~~~lr~~~~~l~~~l~~~~~~~k~~~~~  835 (1293)
T KOG0996|consen  774 GVSKESVEKLERALSKM------------------SDKARQHQEQLHELEERVRKLRERIPELENRLEKLTASVKRLAEL  835 (1293)
T ss_pred             CCCHHHHHHHHHHHHHH------------------HHHHHHHHHHHHHHHHHHHHHHHhhHHHHhHHHHHHHHHHHHHHH
Confidence            33467778888777532                  3556666666655443    4555666666777777777777763


Q ss_pred             hhh--hc------ccccccccchhhHHhhHHHHHHHHhhhhhhHHHHHHhHHHHH------HhHHHHHHHHHHHH-HHHH
Q 021279          185 HKE--KK------CSAGEIQGNAALQERNKALSEHLLKSLDGYRSLKKKYKYVKE------ENTAMRATMEELGK-KVEA  249 (315)
Q Consensus       185 ~k~--~~------~s~~e~~gN~aLq~RNkaLSeqLlKSiDgyRSlKrkyk~~qe------EN~~i~~tme~~~~-~V~a  249 (315)
                      +..  +.      ...-....+..|.++-+-++           -|++.|.++||      +=..+++.++.|+- .|-.
T Consensus       836 ~~~l~~~i~~~E~~~~k~~~d~~~l~~~~~~ie-----------~l~kE~e~~qe~~~Kk~~i~~lq~~i~~i~~e~~q~  904 (1293)
T KOG0996|consen  836 IEYLESQIAELEAAVLKKVVDKKRLKELEEQIE-----------ELKKEVEELQEKAAKKARIKELQNKIDEIGGEKVQA  904 (1293)
T ss_pred             HHHHHHHHHHHHHHhhhccCcHHHHHHHHHHHH-----------HHHHHHHHHHHhhhHHHHHHHHHHHHHHhhchhhHH
Confidence            221  00      01111223333333333332           36777777743      33457777777753 2322


Q ss_pred             H-------HHHHHHHHHhh-------hhhccccccHHHHHHHHHhhhhhhc
Q 021279          250 G-------IDQILGFRQRI-------ATKEEQEVDIEEEITALEGMFDSFN  286 (315)
Q Consensus       250 G-------~~~i~~fr~R~-------~~~~eq~~dIeeEisaLe~mfe~~~  286 (315)
                      -       -+||..|-+-|       .+.+---.-+...+++||++.+...
T Consensus       905 qk~kv~~~~~~~~~l~~~i~k~~~~i~~s~~~i~k~q~~l~~le~~~~~~e  955 (1293)
T KOG0996|consen  905 QKDKVEKINEQLDKLEADIAKLTVAIKTSDRNIAKAQKKLSELEREIEDTE  955 (1293)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHhHHHHhcCcccHHHHHHHHHHHHHHHHHHH
Confidence            2       23333332222       2222222235667777777766544

>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]

Probab=83.06  E-value=73  Score=34.43  Aligned_cols=56  Identities=20%  Similarity=0.319  Sum_probs=24.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHhhhhhccccccHHHHHHHHHhhhhhhcchhhhhcccc
Q 021279          241 EELGKKVEAGIDQILGFRQRIATKEEQEVDIEEEITALEGMFDSFNMKIKKHIQNK  296 (315)
Q Consensus       241 e~~~~~V~aG~~~i~~fr~R~~~~~eq~~dIeeEisaLe~mfe~~~mKi~kh~qkK  296 (315)
                      +.+.....-..+++..++..+......-..+.+++..++..+..++-.+..+.+.+
T Consensus       831 ~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~l~~~~~~~  886 (1163)
T COG1196         831 EELEEEIEELEEKLDELEEELEELEKELEELKEELEELEAEKEELEDELKELEEEK  886 (1163)
T ss_pred             HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33333333333334444444433333333344444455555555555555554443

>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]

Probab=81.77  E-value=81  Score=36.02  Aligned_cols=26  Identities=35%  Similarity=0.438  Sum_probs=12.0

Q ss_pred             hhhhhHHHHHHHHHHhhHHHHHHHHH
Q 021279          155 HELNEMEELINDFKAQNASLLAKVQN  180 (315)
Q Consensus       155 ~ELnemEeli~DlkAQN~~Ll~K~q~  180 (315)
                      |+.++.++-++-.+++...|.+.|+.
T Consensus       494 ~~~ke~~ek~~~~~~~~~~l~~~~~~  519 (1317)
T KOG0612|consen  494 HEQKEVEEKLSEEEAKKRKLEALVRQ  519 (1317)
T ss_pred             HhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence            44444444444444444444444433

>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope

Probab=80.48  E-value=42  Score=29.88  Aligned_cols=138  Identities=20%  Similarity=0.278  Sum_probs=75.4

Q ss_pred             CCCchHHHHHHHHHhHHHHHHHHHHHHHhhcchhhhHhHHHHHHHhhh-----------------hhhHHHHHHHHHHhh
Q 021279          109 EPITDDKEKLRRQLSASLAARKSLEVLCSSLGKEKEIMAGELARKVHE-----------------LNEMEELINDFKAQN  171 (315)
Q Consensus       109 e~~~dekeklkkeL~ASlaArkSLe~mCSSLGKEKeIMA~ElaRKv~E-----------------LnemEeli~DlkAQN  171 (315)
                      ...-.+...|++++...-++|-.|+--+-+|..|-..+-..--..+.+                 -+++...+.|+++|-
T Consensus        99 ~~le~el~~lrk~ld~~~~~r~~le~~i~~L~eEl~fl~~~heeEi~~L~~~~~~~~~~e~~~~~~~dL~~~L~eiR~~y  178 (312)
T PF00038_consen   99 KDLEEELESLRKDLDEETLARVDLENQIQSLKEELEFLKQNHEEEIEELREQIQSSVTVEVDQFRSSDLSAALREIRAQY  178 (312)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSTT----------------HHHHHHHHHHHH
T ss_pred             HHHHHHHhhhhhhhhhhhhhHhHHHHHHHHHHHHHHHHHhhhhhhhhhhhhccccccceeecccccccchhhhhhHHHHH
Confidence            344678888999999999999999999999988765443222111111                 245666778888888


Q ss_pred             HHHHHHHHHhHHhhhhhcccccccccchhhHHhhHHHHHHHHhhhhhhHHHHHHhHHHHHHhHHHHHHHHHHHHHH
Q 021279          172 ASLLAKVQNCAAEHKEKKCSAGEIQGNAALQERNKALSEHLLKSLDGYRSLKKKYKYVKEENTAMRATMEELGKKV  247 (315)
Q Consensus       172 ~~Ll~K~q~~a~e~k~~~~s~~e~~gN~aLq~RNkaLSeqLlKSiDgyRSlKrkyk~~qeEN~~i~~tme~~~~~V  247 (315)
                      +..+.+-...+...-+.+......+.. .-..-...+.+.+...=--+.+|...+..++..|.++..++.++....
T Consensus       179 e~~~~~~~~e~e~~y~~k~~~l~~~~~-~~~~~~~~~~~E~~~~r~~~~~l~~el~~l~~~~~~Le~~l~~le~~~  253 (312)
T PF00038_consen  179 EEIAQKNREELEEWYQSKLEELRQQSE-KSSEELESAKEELKELRRQIQSLQAELESLRAKNASLERQLRELEQRL  253 (312)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHhhhhhhhhhhccccccccccccc-ccccccchhHhHHHHHHhhhhHhhhhhhccccchhhhhhhHHHHHHHH
Confidence            877777766555443322211111000 000111112222222222334555566666666776666666554433

They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	315
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-06
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	3e-04
1i84_S	1184	Smooth muscle myosin heavy chain; muscle protein,	1e-04
1i84_S	1184	Smooth muscle myosin heavy chain; muscle protein,	4e-04

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 48.7 bits (115), Expect = 2e-06
 Identities = 63/397 (15%), Positives = 108/397 (27%), Gaps = 141/397 (35%)

Query: 16  SSSNADRPEDLSFEGIAANVKLLLKLIQDHTEASTKDQDHRKPQRIAGMIT--------- 66
           +  N + PE +    +    KLL ++  + T  S  D       RI  +           
Sbjct: 188 NLKNCNSPETV----LEMLQKLLYQIDPNWTSRS--DHSSNIKLRIHSIQAELRRLLKSK 241

Query: 67  -------ILDDVK-----------------TR------------------IQKSQPVAKR 84
                  +L +V+                 TR                     S  +   
Sbjct: 242 PYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPD 301

Query: 85  SVAELRRCNTDLRPNRAPRDKKLCEP---------ITDDK-----------EKLRRQLSA 124
            V  L     D RP   PR+     P         I D             +KL   + +
Sbjct: 302 EVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIES 361

Query: 125 SLAARKSLEV-----LCSSLGKEKEIMAGELARKVHEL--NEMEELINDFKAQNASLLAK 177
           SL   +  E        S       I    L+    ++  +++  ++N       SL+ K
Sbjct: 362 SLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKL--HKYSLVEK 419

Query: 178 VQNCAAEHKEKKCSAGEIQGNAALQERNKALSEHLL--KSLDGYRSLKKK---------- 225
                 + KE   S   I     L+ + K  +E+ L    +D Y   K            
Sbjct: 420 ------QPKESTISIPSIY----LELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYL 469

Query: 226 ----YKYV-----KEENTAMRATMEELGKKVEAGIDQILGFRQRIATKEEQEVDIEEEIT 276
               Y ++       E+         +       +D    F ++   K      I  + T
Sbjct: 470 DQYFYSHIGHHLKNIEHPERMTLFRMV------FLD--FRFLEQ---K------IRHDST 512

Query: 277 ALEGMFDSFNM-----KIKKHIQNKSDCGKPKAPINA 308
           A        N        K +I +  +  K +  +NA
Sbjct: 513 AWNASGSILNTLQQLKFYKPYICD--NDPKYERLVNA 547

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 41.8 bits (97), Expect = 3e-04
 Identities = 48/407 (11%), Positives = 105/407 (25%), Gaps = 141/407 (34%)

Query: 10  PDLAKASSSNADRPEDLSFEGIAANVKLLLKLIQDHTEASTK-------DQD-------- 54
            D+ K+  S  +    +  +   +    L   +    E   +         +        
Sbjct: 39  QDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPI 98

Query: 55  HRKPQRIAGMITILDDVKTRIQKS-QPVAKRSV------AELRRCNTDLRPNR------- 100
             + ++ + M  +  + + R+    Q  AK +V       +LR+   +LRP +       
Sbjct: 99  KTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGV 158

Query: 101 -----------APRDKK-----------------------------LC------------ 108
                           K                             L             
Sbjct: 159 LGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSD 218

Query: 109 ------EPITDDKEKLRRQLSASLAARKSLEVL---------------CSSL--GKEKEI 145
                   I   + +LRR L +       L VL               C  L   + K++
Sbjct: 219 HSSNIKLRIHSIQAELRRLLKSKPYEN-CLLVLLNVQNAKAWNAFNLSCKILLTTRFKQV 277

Query: 146 MAGELARKVHELNEMEELINDF-KAQNASLLAKVQNCAAE---HKEKKCSAGEIQGNAAL 201
                A     +  ++         +  SLL K  +C  +    +    +   +   A  
Sbjct: 278 TDFLSAATTTHI-SLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAES 336

Query: 202 QERNKALSEHLLKSLDGYRSLKKKYKYVKEENTAMRATMEELGKKVEAGIDQI--LGFRQ 259
                A  ++              +K+V           ++L   +E+ ++ +    +R+
Sbjct: 337 IRDGLATWDN--------------WKHVN---------CDKLTTIIESSLNVLEPAEYRK 373

Query: 260 R---IATKEEQEVDIEEEITAL--EGMFDSFNMKIKKHIQNKSDCGK 301
               ++        I   + +L    +  S  M +   +   S   K
Sbjct: 374 MFDRLSVFPP-SAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEK 419

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184

 Score = 42.9 bits (101), Expect = 1e-04
 Identities = 28/167 (16%), Positives = 61/167 (36%), Gaps = 4/167 (2%)

Query: 114  DKEKLRRQLSASLAARKSLEVLCSSLGKEKEIMAGELARKVHELNEMEELINDFKAQNAS 173
            +K     ++         +E   + L KE++++   ++     L E EE   +       
Sbjct: 977  EKVTADGKIKKMEDDILIMEDQNNKLTKERKLLEERVSDLTTNLAEEEEKAKNLTKLKNK 1036

Query: 174  LLAKVQNCAAEHKEKKCSAGEIQ-GNAALQERNKALSEHLLKSLDGYRSLKKKYKYVKEE 232
              + +       K+++ S  E++     L+  +  L E + +       LK +    +EE
Sbjct: 1037 HESMISELEVRLKKEEKSRQELEKIKRKLEGESSDLHEQIAELQAQIAELKAQLAKKEEE 1096

Query: 233  NTAMRATMEELGKKVEAGIDQILGFRQRIATKEEQEVDIEEEITALE 279
              A  A +E+   +    + +I      I    + + D+E E  A  
Sbjct: 1097 LQAALARLEDETSQKNNALKKIRELESHI---SDLQEDLESEKAARN 1140

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184

 Score = 41.0 bits (96), Expect = 4e-04
 Identities = 37/204 (18%), Positives = 73/204 (35%), Gaps = 10/204 (4%)

Query: 68   LDDVKTRIQKSQPVAKRSVAELRRCNTDLRPNRAPRDKKLCEPITDDKEKLRRQLSASLA 127
            ++D    ++       +    L    +DL  N A  ++K    +T  K K    +S    
Sbjct: 988  MEDDILIMEDQNNKLTKERKLLEERVSDLTTNLAEEEEKAKN-LTKLKNKHESMISELEV 1046

Query: 128  ARKSLEVLCSSLGKEKEIMAGELARKVHELNEMEELINDFKAQNASLLAKVQNCAAEHKE 187
              K  E     L K K  + GE +    ++ E++  I + KAQ A    ++Q   A  ++
Sbjct: 1047 RLKKEEKSRQELEKIKRKLEGESSDLHEQIAELQAQIAELKAQLAKKEEELQAALARLED 1106

Query: 188  KKCSAGEIQG-NAALQERNKALSEHLLKSLDGYRSLKKKYKYVKEENTAMRATMEELGKK 246
            +             L+     L E L          +K+ + + EE  A++  +E+    
Sbjct: 1107 ETSQKNNALKKIRELESHISDLQEDLESEKAARNKAEKQKRDLSEELEALKTELEDTLDT 1166

Query: 247  VEAGIDQILGFRQRIATKEEQEVD 270
                       +Q +   + ++ D
Sbjct: 1167 TAT--------QQELRGSDYKDDD 1182

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	315
1i84_S	1184	Smooth muscle myosin heavy chain; muscle protein,	92.7
1c1g_A	284	Tropomyosin; contractIle protein; 7.00A {Sus scrof	90.43
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	90.36
2dfs_A	1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	89.3
1i84_S	1184	Smooth muscle myosin heavy chain; muscle protein,	87.52
2fxo_A	129	Myosin heavy chain, cardiac muscle beta isoform; c	87.46
3bas_A	89	Myosin heavy chain, striated muscle/general contro	85.58
3cvf_A	79	Homer-3, homer protein homolog 3; coiled coil, alt	83.57
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	80.73

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A

Probab=92.70  E-value=0.26  Score=50.48  Aligned_cols=71  Identities=20%  Similarity=0.249  Sum_probs=45.6

Q ss_pred             hHHHHHHHHHhHHHHHHHHHHHHHhhcchhhhHhHHHHHHHhhhhhhHHHHHHHHHHhhHHHHHHHHHhHH
Q 021279          113 DDKEKLRRQLSASLAARKSLEVLCSSLGKEKEIMAGELARKVHELNEMEELINDFKAQNASLLAKVQNCAA  183 (315)
Q Consensus       113 dekeklkkeL~ASlaArkSLe~mCSSLGKEKeIMA~ElaRKv~ELnemEeli~DlkAQN~~Ll~K~q~~a~  183 (315)
                      ++.+.++.+|...-..++-++--...|-.|++....++...-.++.+.++-+..+.++.+.|-++++....
T Consensus       864 ~eL~el~~~L~~le~~l~ele~~l~~Le~e~~~l~~~L~~e~~~l~~~e~~l~~l~~~~~~Le~~l~ele~  934 (1184)
T 1i84_S          864 EELQRTKERQQKAEAELKELEQKHTQLCEEKNLLQEKLQAETELYAEAEEMRVRLAAKKQELEEILHEMEA  934 (1184)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44555555665555566667777777777777766666666666666677777776666666665555433

>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A

Probab=90.43  E-value=4.8  Score=30.81  Aligned_cols=7  Identities=0%  Similarity=0.069  Sum_probs=2.6

Q ss_pred             HHHHHHh
Q 021279          254 ILGFRQR  260 (315)
Q Consensus       254 i~~fr~R  260 (315)
                      +..+..+
T Consensus       190 ~~~~~~~  196 (284)
T 1c1g_A          190 CAELEEE  196 (284)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            3333333

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=90.36  E-value=4.9  Score=36.50  Aligned_cols=30  Identities=20%  Similarity=0.253  Sum_probs=19.2

Q ss_pred             hhhhhHHHHHHHHHHhhHHHHHHHHHhHHh
Q 021279          155 HELNEMEELINDFKAQNASLLAKVQNCAAE  184 (315)
Q Consensus       155 ~ELnemEeli~DlkAQN~~Ll~K~q~~a~e  184 (315)
                      +|+++.++.|..+++...+..+.++....+
T Consensus       456 ~e~~~~~~~i~~l~~~~~~~~~~l~~~~~~  485 (597)
T 3oja_B          456 AEVNELRAEVQQLTNEQIQQEQLLQGLHAE  485 (597)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            366666777777777666666666655543

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}

Probab=89.30  E-value=7.2  Score=40.51  Aligned_cols=91  Identities=16%  Similarity=0.235  Sum_probs=57.2

Q ss_pred             HHHHHHHhhcchhhhHhHHHHHHHhhhhhhHHHHHHHHHHhhHHHHHHHHHhHHhhhhhcccccccccchhhHHhhHHHH
Q 021279          130 KSLEVLCSSLGKEKEIMAGELARKVHELNEMEELINDFKAQNASLLAKVQNCAAEHKEKKCSAGEIQGNAALQERNKALS  209 (315)
Q Consensus       130 kSLe~mCSSLGKEKeIMA~ElaRKv~ELnemEeli~DlkAQN~~Ll~K~q~~a~e~k~~~~s~~e~~gN~aLq~RNkaLS  209 (315)
                      ..++.-|+.|-++-+-|-..    -.|+...+..|..|..+++.|-+.++....|.+             .|++++..+.
T Consensus       956 ~~~~~e~~~L~~~l~~le~~----~~e~~~~~~~v~~L~~e~~~l~~~~~~~~ke~~-------------~lee~~~~~~ 1018 (1080)
T 2dfs_A          956 ITYSTETEKLRSDVERLRMS----EEEAKNATNRVLSLQEEIAKLRKELHQTQTEKK-------------TIEEWADKYK 1018 (1080)
T ss_dssp             HHHHHHHHHHHHTHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------HHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------HHHHHHHHHH
Confidence            44566666665544433332    445556666677777777777666666555433             3455555444


Q ss_pred             HHHHhhhhhhHHHHHHhHHHHHHhHHHHHHHHHHHHHH
Q 021279          210 EHLLKSLDGYRSLKKKYKYVKEENTAMRATMEELGKKV  247 (315)
Q Consensus       210 eqLlKSiDgyRSlKrkyk~~qeEN~~i~~tme~~~~~V  247 (315)
                      +          .|..+...+++||..++..++++...+
T Consensus      1019 ~----------~L~~kv~~L~~e~~~L~qq~~~l~~~~ 1046 (1080)
T 2dfs_A         1019 H----------ETEQLVSELKEQNTLLKTEKEELNRRI 1046 (1080)
T ss_dssp             H----------HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             H----------HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3          455788888889999998888887433

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A

Probab=87.52  E-value=0.64  Score=47.70  Aligned_cols=11  Identities=18%  Similarity=0.613  Sum_probs=7.7

Q ss_pred             hhhHHhhHhHH
Q 021279           62 AGMITILDDVK   72 (315)
Q Consensus        62 agMmtILDdvk   72 (315)
                      +|++..|++.+
T Consensus       777 ~g~l~~LE~~r  787 (1184)
T 1i84_S          777 TGVLAHLEEER  787 (1184)
T ss_dssp             TTHHHHHHHHH
T ss_pred             chHHHHHHHHH
Confidence            57777777654

>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A

Probab=87.46  E-value=9.3  Score=30.22  Aligned_cols=72  Identities=26%  Similarity=0.278  Sum_probs=65.2

Q ss_pred             chHHHHHHHHHhHHHHHHHHHHHHHhhcchhhhHhHHHHHHHhhhhhhHHHHHHHHHHhhHHHHHHHHHhHH
Q 021279          112 TDDKEKLRRQLSASLAARKSLEVLCSSLGKEKEIMAGELARKVHELNEMEELINDFKAQNASLLAKVQNCAA  183 (315)
Q Consensus       112 ~dekeklkkeL~ASlaArkSLe~mCSSLGKEKeIMA~ElaRKv~ELnemEeli~DlkAQN~~Ll~K~q~~a~  183 (315)
                      .++..+|+..|..+-+.|+-|+--..+|=.||..+...|.--...+.+.|+....|.++...|=.+|+..-.
T Consensus        19 ~eel~~lke~l~k~e~~r~ele~~~~~l~~Ek~~L~~qL~~E~~~l~e~EE~~~~L~~~k~eLe~~l~el~~   90 (129)
T 2fxo_A           19 KEEFTRLKEALEKSEARRKELEEKMVSLLQEKNDLQLQVQAEQDNLADAEERCDQLIKNKIQLEAKVKEMNK   90 (129)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            467788999999999999999999999999999999999999899999999999999999888888877654

>3bas_A Myosin heavy chain, striated muscle/general control protein GCN4 chimera; alpha-helical coiled coil, disorder, salt links; 2.30A {Argopecten irradians} SCOP: h.1.26.1 PDB: 1nkn_A 3bat_A

Probab=85.58  E-value=4.5  Score=30.56  Aligned_cols=63  Identities=19%  Similarity=0.316  Sum_probs=55.2

Q ss_pred             chHHHHHHHHHhHHHHHHHHHHHHHhhcchhhhHhHHHHHHHhhhhhhHHHHHHHHHHhhHHHHHHHHHh
Q 021279          112 TDDKEKLRRQLSASLAARKSLEVLCSSLGKEKEIMAGELARKVHELNEMEELINDFKAQNASLLAKVQNC  181 (315)
Q Consensus       112 ~dekeklkkeL~ASlaArkSLe~mCSSLGKEKeIMA~ElaRKv~ELnemEeli~DlkAQN~~Ll~K~q~~  181 (315)
                      .++..+|+..|..+-+.|+-|+-.+.+|-.||..+...       |.++||....|.++...|=.+|+..
T Consensus        20 eeel~~lke~l~k~e~~rkele~~~~~l~~ek~~L~~q-------l~eaEe~~~~L~~~K~eLE~~l~el   82 (89)
T 3bas_A           20 LKQMDKMKEDLAKTERIKKELEEQNVTLLEQKNDLFGS-------MKQLEDKVEELLSKNYHLENEVARL   82 (89)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHhHHHHHHHHHHHHHHHHHHHHHH
Confidence            45677888899999999999999999999999988877       8899999999999988887777664

>3cvf_A Homer-3, homer protein homolog 3; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, phosphoprotein, polymorphism; 2.90A {Homo sapiens}

Probab=83.57  E-value=5  Score=30.93  Aligned_cols=71  Identities=21%  Similarity=0.371  Sum_probs=51.3

Q ss_pred             HHHHhhHHHHHHHHHhHHhhhhhcccccccccchhhHHhhHHHHHHHHhhhhhhHHHHHHhHHHHHHhHHHHHHHHHHHH
Q 021279          166 DFKAQNASLLAKVQNCAAEHKEKKCSAGEIQGNAALQERNKALSEHLLKSLDGYRSLKKKYKYVKEENTAMRATMEELGK  245 (315)
Q Consensus       166 DlkAQN~~Ll~K~q~~a~e~k~~~~s~~e~~gN~aLq~RNkaLSeqLlKSiDgyRSlKrkyk~~qeEN~~i~~tme~~~~  245 (315)
                      ||-+|++.+..|||.                    +..||..|-+++       ++|...+.+.+.+-.+++.-+..+..
T Consensus         3 ~l~~e~e~~~~klq~--------------------~E~rN~~Le~~v-------~~le~~Le~s~~~q~~~~~Elk~l~e   55 (79)
T 3cvf_A            3 HMAAEREETQQKVQD--------------------LETRNAELEHQL-------RAMERSLEEARAERERARAEVGRAAQ   55 (79)
T ss_dssp             -------CTTHHHHH--------------------HHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHH--------------------HHHhhhHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            566677777777764                    445677777665       67888888999888888888888888


Q ss_pred             HHHHHHHHHHHHHHhhhh
Q 021279          246 KVEAGIDQILGFRQRIAT  263 (315)
Q Consensus       246 ~V~aG~~~i~~fr~R~~~  263 (315)
                      -.+.-|+-+.-||+-+++
T Consensus        56 ~Ld~KI~eL~elRqgLak   73 (79)
T 3cvf_A           56 LLDVSLFELSELREGLAR   73 (79)
T ss_dssp             HHHHHHHHHHHHHHHHHH
T ss_pred             HHhhHHHHHHHHHHHHHH
Confidence            888889999999997765

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=80.73  E-value=10  Score=34.44  Aligned_cols=41  Identities=12%  Similarity=0.097  Sum_probs=19.0

Q ss_pred             hhHHHHHHHHhhhhhhHHHHHHhHHHHHHhHHHHHHHHHHH
Q 021279          204 RNKALSEHLLKSLDGYRSLKKKYKYVKEENTAMRATMEELG  244 (315)
Q Consensus       204 RNkaLSeqLlKSiDgyRSlKrkyk~~qeEN~~i~~tme~~~  244 (315)
                      |...+-..+..-...+-.++..|+.+++|...+..-+++..
T Consensus       517 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~~~~~~  557 (597)
T 3oja_B          517 RQAFKLRETQARRTEADAKQKETEDLEQENIALEKQLDNKR  557 (597)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hhhhhHHHHHHHHHhhhhhhcchhhHHhhhHHHHHHHhhhh
Confidence            33333333333333344445555555555555555444443

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00