Citrus Sinensis ID: 021493

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-
MQSLKNSPSPLKRPRLTPQPPPTPPNPQTLTTNKPSKWTPLNLTQSELSLPLTFPTGQTFRWKKTGPLQYTGPIGPHLISLKHLQNGDVCYHIHTSPSEPAAKSALLDFLNMGISLGELWEGFSASDCRFAELAKYLAGARVLRQDPVECLLQFLCSSNNNIARITKMVDFLASLGSHLGNVEGFEFHEFPSLERLSLVSEVELRNAGFGYRAKYITGTVDVLQSKHSGGAEWLLSLRKLDLQEAIDALCTLPGVGPKVAACIALFSLDQHHAIPVDTHVWKIATRYLLPELAGVRLTPKLCSRVAEAFCE
ccccccccccccccccccccccccccccccccccccccEEccccccccccccccccccccccEEEcccEEEEEEccEEEEEEEEccccEEEEEcccccHHHHHHHHHHHHcccccHHHHHHHHccccHHHHHHHHHHcccccccccHHHHHHHHHHHHcccHHHHHHHHHHHHHHcccccccccccccccccHHHHccccHHHHHHccccccHHHHHHHHHHHHHHcccccccHHHHccccHHHHHHHHHccccccHHHHHHHHHHHccccccccccHHHHHHHHHHcccccccccccHHHHHHHHHHHcc
ccccccccccccccccccccccccccccHHHccccHHHccccccHHHccHHHHEccccEEEEEEccccEEEEEEccEEEEEEEccccEEEEEEccccccHHHHHHHHHHccccccHHHHHHHHHHHcHHHHHHHHHccccccccccHHHHHHHHHccccccHHHHHHHHHHHHHHccccEEEccEEEEccccHHHHHcccHHHHHHccccccHHHHHHHHHHHHHcccccHHHHHHHccccHHHHHHHHcccccccHHHHHHHHHHcccccccccccHHHHHHHHHHcccccccccccHHHHHHHHHHHHc
mqslknspsplkrprltpqppptppnpqtlttnkpskwtplnltqselslpltfptgqtfrwkktgplqytgpigphlislkhlqngdvcyhihtspsepaaKSALLDFLNMGISLgelwegfsasdCRFAELAKYLAGARVLRQDPVECLLQFLCSSNNNIARITKMVDFLASLGshlgnvegfefhefpslerlslvsevelrnagfgyrakyITGTVDVlqskhsggaEWLLSLRKLDLQEAIDALctlpgvgpKVAACIALFSldqhhaipvdTHVWKIATRYllpelagvrltpKLCSRVAEAFCE
mqslknspsplkrprltpqppptppnpqtlttnkpSKWTPLNLTQSELSLPLTFPTGQTFRWKKTGPLQYTGPIGPHLISLKHLQNGDVCYHIHTSPSEPAAKSALLDFLNMGISLGELWEGFSASDCRFAELAKYLAGARVLRQDPVECLLQFLCSSNNNIARITKMVDFLASLGSHLGNVEGFEFHEFPSLERLSLVSEVELRNAGFGYRAKYITGTVDVLQSKHSGGAEWLLSLRKLDLQEAIDALCTLPGVGPKVAACIALFSLDQHHAIPVDTHVWKIATRYLLpelagvrltPKLCSRVAEAFCE
MQSLKNSPSplkrprltpqppptppnpqtlttnkpSKWTPLNLTQSELSLPLTFPTGQTFRWKKTGPLQYTGPIGPHLISLKHLQNGDVCYHIHTSPSEPAAKSALLDFLNMGISLGELWEGFSASDCRFAELAKYLAGARVLRQDPVECLLQFLCSSNNNIARITKMVDFLASLGSHLGNVEGFEFHEFPslerlslvsevelrNAGFGYRAKYITGTVDVLQSKHSGGAEWLLSLRKLDLQEAIDALCTLPGVGPKVAACIALFSLDQHHAIPVDTHVWKIATRYLLPELAGVRLTPKLCSRVAEAFCE
**********************************************ELSLPLTFPTGQTFRWKKTGPLQYTGPIGPHLISLKHLQNGDVCYHIHTS****AAKSALLDFLNMGISLGELWEGFSASDCRFAELAKYLAGARVLRQDPVECLLQFLCSSNNNIARITKMVDFLASLGSHLGNVEGFEFHEFPSLERLSLVSEVELRNAGFGYRAKYITGTVDVLQSKHSGGAEWLLSLRKLDLQEAIDALCTLPGVGPKVAACIALFSLDQHHAIPVDTHVWKIATRYLLPELAGVRLTPKLCSRVAEA***
************************************KWTPLNLTQSELSLPLTFPTGQTFRWKKTGPLQYTGPIGPHLISLKHLQNGDVCYHIHTSPSEPAAKSALLDFLNMGISLGELWEGFSASDCRFAELAKYLAGARVLRQDPVECLLQFLCSSNNNIARITKMVDFLASLGSHLGNVEGFEFHEFPSLERLSLVSEVELRNAGFGYRAKYITGTVDVLQSKHSGGAEWLLSLRKLDLQEAIDALCTLPGVGPKVAACIALFSLDQHHAIPVDTHVWKIATRYLLPELAGVRLTPKLCSRVAEAFCE
*************PRLTPQPPPTPPNPQTLTTNKPSKWTPLNLTQSELSLPLTFPTGQTFRWKKTGPLQYTGPIGPHLISLKHLQNGDVCYHIHTSPSEPAAKSALLDFLNMGISLGELWEGFSASDCRFAELAKYLAGARVLRQDPVECLLQFLCSSNNNIARITKMVDFLASLGSHLGNVEGFEFHEFPSLERLSLVSEVELRNAGFGYRAKYITGTVDVLQSKHSGGAEWLLSLRKLDLQEAIDALCTLPGVGPKVAACIALFSLDQHHAIPVDTHVWKIATRYLLPELAGVRLTPKLCSRVAEAFCE
*********************************KPSKWTPLNLTQSELSLPLTFPTGQTFRWKKTGPLQYTGPIGPHLISLKHLQNGDVCYHIHTSPSEPAAKSALLDFLNMGISLGELWEGFSASDCRFAELAKYLAGARVLRQDPVECLLQFLCSSNNNIARITKMVDFLASLGSHLGNVEGFEFHEFPSLERLSLVSEVELRNAGFGYRAKYITGTVDVLQSKHSGGAEWLLSLRKLDLQEAIDALCTLPGVGPKVAACIALFSLDQHHAIPVDTHVWKIATRYLLPELAGVRLTPKLCSRVAEAFCE
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SSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooo
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MQSLKNSPSPLKRPRLTPQPPPTPPNPQTLTTNKPSKWTPLNLTQSELSLPLTFPTGQTFRWKKTGPLQYTGPIGPHLISLKHLQNGDVCYHIHTSPSEPAAKSALLDFLNMGISLGELWEGFSASDCRFAELAKYLAGARVLRQDPVECLLQFLCSSNNNIARITKMVDFLASLGSHLGNVEGFEFHEFPSLERLSLVSEVELRNAGFGYRAKYITGTVDVLQSKHSGGAEWLLSLRKLDLQEAIDALCTLPGVGPKVAACIALFSLDQHHAIPVDTHVWKIATRYLLPELAGVRLTPKLCSRVAEAFCE
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query311 2.2.26 [Sep-21-2011]
Q9FNY7365 N-glycosylase/DNA lyase O yes no 0.961 0.819 0.689 1e-119
O15527345 N-glycosylase/DNA lyase O no no 0.816 0.736 0.385 3e-49
O08760345 N-glycosylase/DNA lyase O yes no 0.845 0.762 0.382 3e-48
O70249345 N-glycosylase/DNA lyase O yes no 0.816 0.736 0.381 3e-47
Q9V3I8343 N-glycosylase/DNA lyase O yes no 0.845 0.766 0.333 5e-36
P53397376 N-glycosylase/DNA lyase O yes no 0.797 0.659 0.339 2e-32
O27397312 Probable N-glycosylase/DN yes no 0.469 0.467 0.304 2e-13
P54137298 Probable endonuclease III no no 0.418 0.436 0.318 1e-05
O35980300 Endonuclease III-like pro no no 0.205 0.213 0.346 0.0008
>sp|Q9FNY7|OGG1_ARATH N-glycosylase/DNA lyase OGG1 OS=Arabidopsis thaliana GN=OGG1 PE=1 SV=1 Back     alignment and function desciption
 Score =  426 bits (1096), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 215/312 (68%), Positives = 244/312 (78%), Gaps = 13/312 (4%)

Query: 11  LKRPRLTPQP------------PPTPPNPQTLTTNKPSKWTPLNLTQSELSLPLTFPTGQ 58
           +KRPR T QP            P TP   Q L      KW PL LT +EL+LPLTFPTGQ
Sbjct: 1   MKRPRPTSQPSISSTVKPPLSPPVTPILKQKLHRTGTPKWFPLKLTHTELTLPLTFPTGQ 60

Query: 59  TFRWKKTGPLQYTGPIGPHLISLKHLQNGD-VCYHIHTSPSEPAAKSALLDFLNMGISLG 117
           TFRWKKTG +QY+G IGPHL+SL+     D V Y +H S S  +A+ ALLDFLN  ISL 
Sbjct: 61  TFRWKKTGAIQYSGTIGPHLVSLRQRPGDDAVSYCVHCSTSPKSAELALLDFLNAEISLA 120

Query: 118 ELWEGFSASDCRFAELAKYLAGARVLRQDPVECLLQFLCSSNNNIARITKMVDFLASLGS 177
           ELW  FS  D RF ELA++L GARVLRQDP+ECL+QFLCSSNNNIARITKMVDF++SLG 
Sbjct: 121 ELWSDFSKKDPRFGELARHLRGARVLRQDPLECLIQFLCSSNNNIARITKMVDFVSSLGL 180

Query: 178 HLGNVEGFEFHEFPSLERLSLVSEVELRNAGFGYRAKYITGTVDVLQSKHSGGAEWLLSL 237
           HLG+++GFEFH+FPSL+RLS VSE E R AGFGYRAKYITGTV+ LQ+K  GG EWLLSL
Sbjct: 181 HLGDIDGFEFHQFPSLDRLSRVSEEEFRKAGFGYRAKYITGTVNALQAKPGGGNEWLLSL 240

Query: 238 RKLDLQEAIDALCTLPGVGPKVAACIALFSLDQHHAIPVDTHVWKIATRYLLPELAGVRL 297
           RK++LQEA+ ALCTLPGVGPKVAACIALFSLDQH AIPVDTHVW+IAT YLLP+LAG +L
Sbjct: 241 RKVELQEAVAALCTLPGVGPKVAACIALFSLDQHSAIPVDTHVWQIATNYLLPDLAGAKL 300

Query: 298 TPKLCSRVAEAF 309
           TPKL  RVAEAF
Sbjct: 301 TPKLHGRVAEAF 312
Involved in repair of DNA damaged by oxidation by incising DNA at 8-oxoG residues. Excises 7,8-dihydro-8-oxoguanine and 2,6-diamino-4-hydroxy-5-N-methylformamidopyrimidine (Fapy) from damaged DNA. Has a beta-lyase activity that nicks DNA 3' to the lesion.
Arabidopsis thaliana (taxid: 3702)
EC: 4EC: .EC: 2EC: .EC: 9EC: 9EC: .EC: 1EC: 8
>sp|O15527|OGG1_HUMAN N-glycosylase/DNA lyase OS=Homo sapiens GN=OGG1 PE=1 SV=2 Back     alignment and function description
>sp|O08760|OGG1_MOUSE N-glycosylase/DNA lyase OS=Mus musculus GN=Ogg1 PE=2 SV=2 Back     alignment and function description
>sp|O70249|OGG1_RAT N-glycosylase/DNA lyase OS=Rattus norvegicus GN=Ogg1 PE=2 SV=1 Back     alignment and function description
>sp|Q9V3I8|OGG1_DROME N-glycosylase/DNA lyase OS=Drosophila melanogaster GN=Ogg1 PE=2 SV=2 Back     alignment and function description
>sp|P53397|OGG1_YEAST N-glycosylase/DNA lyase OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=OGG1 PE=1 SV=1 Back     alignment and function description
>sp|O27397|OGG1_METTH Probable N-glycosylase/DNA lyase OS=Methanothermobacter thermautotrophicus (strain ATCC 29096 / DSM 1053 / JCM 10044 / NBRC 100330 / Delta H) GN=MTH_1342 PE=3 SV=1 Back     alignment and function description
>sp|P54137|NTH1_CAEEL Probable endonuclease III homolog OS=Caenorhabditis elegans GN=nth-1 PE=1 SV=2 Back     alignment and function description
>sp|O35980|NTHL1_MOUSE Endonuclease III-like protein 1 OS=Mus musculus GN=Nthl1 PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query311
225459615399 PREDICTED: N-glycosylase/DNA lyase [Viti 0.881 0.686 0.791 1e-128
255558622 412 8-oxoguanine DNA glycosylase, putative [ 0.884 0.667 0.797 1e-127
224084932367 predicted protein [Populus trichocarpa] 0.890 0.754 0.772 1e-126
112982633378 8-oxoguanine DNA glycosylase [Populus ni 0.890 0.732 0.768 1e-126
356518553395 PREDICTED: N-glycosylase/DNA lyase-like 0.906 0.713 0.716 1e-118
15219068365 8-oxoguanine-DNA glycosylase 1 [Arabidop 0.961 0.819 0.689 1e-117
5263323391 Similar to gb|U96710 8-oxoguanine DNA-gl 0.961 0.764 0.689 1e-117
297845148366 8-oxoguanine-DNA glycosylase 1 [Arabidop 0.961 0.816 0.686 1e-116
357463557 420 N-glycosylase/DNA lyase [Medicago trunca 0.890 0.659 0.712 1e-116
449464184393 PREDICTED: N-glycosylase/DNA lyase-like 0.945 0.748 0.695 1e-113
>gi|225459615|ref|XP_002285873.1| PREDICTED: N-glycosylase/DNA lyase [Vitis vinifera] Back     alignment and taxonomy information
 Score =  463 bits (1191), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 217/274 (79%), Positives = 242/274 (88%)

Query: 37  KWTPLNLTQSELSLPLTFPTGQTFRWKKTGPLQYTGPIGPHLISLKHLQNGDVCYHIHTS 96
           KW PLN+ +SELSL LTFPTGQTFRWK+T PLQYTG IG HLISLKHLQNGDV Y IH S
Sbjct: 65  KWVPLNIAKSELSLALTFPTGQTFRWKQTTPLQYTGVIGSHLISLKHLQNGDVAYLIHQS 124

Query: 97  PSEPAAKSALLDFLNMGISLGELWEGFSASDCRFAELAKYLAGARVLRQDPVECLLQFLC 156
           PSE  A+SALLDFLN+GISL E+WE F ASD RFAELA+YL GARVLRQDP+ECL+QFLC
Sbjct: 125 PSEENARSALLDFLNVGISLSEMWEVFKASDSRFAELAQYLGGARVLRQDPLECLIQFLC 184

Query: 157 SSNNNIARITKMVDFLASLGSHLGNVEGFEFHEFPSLERLSLVSEVELRNAGFGYRAKYI 216
           SSNNNI RITKMVDF++SLG++LG+V GF+F+EFPSL+RLS+VSE + R AGFGYRAKYI
Sbjct: 185 SSNNNIGRITKMVDFVSSLGNYLGSVGGFDFYEFPSLDRLSMVSEEDFREAGFGYRAKYI 244

Query: 217 TGTVDVLQSKHSGGAEWLLSLRKLDLQEAIDALCTLPGVGPKVAACIALFSLDQHHAIPV 276
            GTV  LQSK  GG EWL SLR++DLQE +DAL TLPGVGPKVAACIALFSLDQHHAIPV
Sbjct: 245 IGTVKALQSKSGGGIEWLASLREMDLQEVVDALSTLPGVGPKVAACIALFSLDQHHAIPV 304

Query: 277 DTHVWKIATRYLLPELAGVRLTPKLCSRVAEAFC 310
           DTHVW+IATRYL+PELAG RLTPKLCSRVA+AF 
Sbjct: 305 DTHVWQIATRYLIPELAGARLTPKLCSRVADAFV 338

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|255558622|ref|XP_002520336.1| 8-oxoguanine DNA glycosylase, putative [Ricinus communis] gi|223540555|gb|EEF42122.1| 8-oxoguanine DNA glycosylase, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|224084932|ref|XP_002307451.1| predicted protein [Populus trichocarpa] gi|222856900|gb|EEE94447.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|112982633|dbj|BAF03495.1| 8-oxoguanine DNA glycosylase [Populus nigra] Back     alignment and taxonomy information
>gi|356518553|ref|XP_003527943.1| PREDICTED: N-glycosylase/DNA lyase-like [Glycine max] Back     alignment and taxonomy information
>gi|15219068|ref|NP_173590.1| 8-oxoguanine-DNA glycosylase 1 [Arabidopsis thaliana] gi|11967657|emb|CAC19363.1| 8-oxoguanine DNA glycosylase [Arabidopsis thaliana] gi|16074117|emb|CAC83625.1| 8-oxoguanine-DNA glycosylase [Arabidopsis thaliana] gi|51971190|dbj|BAD44287.1| 8-oxoguanine DNA glycosylase-like protein [Arabidopsis thaliana] gi|94442429|gb|ABF19002.1| At1g21710 [Arabidopsis thaliana] gi|332192024|gb|AEE30145.1| 8-oxoguanine-DNA glycosylase 1 [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|5263323|gb|AAD41425.1|AC007727_14 Similar to gb|U96710 8-oxoguanine DNA-glycosylase from Homo sapiens [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|297845148|ref|XP_002890455.1| 8-oxoguanine-DNA glycosylase 1 [Arabidopsis lyrata subsp. lyrata] gi|297336297|gb|EFH66714.1| 8-oxoguanine-DNA glycosylase 1 [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|357463557|ref|XP_003602060.1| N-glycosylase/DNA lyase [Medicago truncatula] gi|357520327|ref|XP_003630452.1| N-glycosylase/DNA lyase [Medicago truncatula] gi|355491108|gb|AES72311.1| N-glycosylase/DNA lyase [Medicago truncatula] gi|355524474|gb|AET04928.1| N-glycosylase/DNA lyase [Medicago truncatula] Back     alignment and taxonomy information
>gi|449464184|ref|XP_004149809.1| PREDICTED: N-glycosylase/DNA lyase-like [Cucumis sativus] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query311
TAIR|locus:2036957365 OGG1 "8-oxoguanine-DNA glycosy 0.877 0.747 0.704 6.9e-102
UNIPROTKB|F1P1Z7303 OGG1 "Uncharacterized protein" 0.871 0.894 0.368 1.5e-44
UNIPROTKB|F1PYD9344 OGG1 "Uncharacterized protein" 0.794 0.718 0.377 9.3e-43
UNIPROTKB|O15527345 OGG1 "N-glycosylase/DNA lyase" 0.797 0.718 0.371 2.5e-42
MGI|MGI:1097693345 Ogg1 "8-oxoguanine DNA-glycosy 0.797 0.718 0.382 3.2e-42
UNIPROTKB|F1SQF9345 OGG1 "Uncharacterized protein" 0.797 0.718 0.375 5.2e-42
UNIPROTKB|F1MPV2347 OGG1 "Uncharacterized protein" 0.797 0.714 0.375 8.4e-42
RGD|621168345 Ogg1 "8-oxoguanine DNA glycosy 0.797 0.718 0.367 7.5e-41
UNIPROTKB|O70249345 Ogg1 "N-glycosylase/DNA lyase" 0.797 0.718 0.367 7.5e-41
ASPGD|ASPL0000004747 414 AN6682 [Emericella nidulans (t 0.643 0.483 0.351 6.4e-37
TAIR|locus:2036957 OGG1 "8-oxoguanine-DNA glycosylase 1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1010 (360.6 bits), Expect = 6.9e-102, P = 6.9e-102
 Identities = 193/274 (70%), Positives = 220/274 (80%)

Query:    37 KWTPLNLTQSELSLPLTFPTGQTFRWKKTGPLQYTGPIGPHLISLKHLQNGD-VCYHIHT 95
             KW PL LT +EL+LPLTFPTGQTFRWKKTG +QY+G IGPHL+SL+     D V Y +H 
Sbjct:    39 KWFPLKLTHTELTLPLTFPTGQTFRWKKTGAIQYSGTIGPHLVSLRQRPGDDAVSYCVHC 98

Query:    96 SPSEPAAKSALLDFLNMGISLGELWEGFSASDCRFAELAKYLAGARVLRQDPVECLLQFL 155
             S S  +A+ ALLDFLN  ISL ELW  FS  D RF ELA++L GARVLRQDP+ECL+QFL
Sbjct:    99 STSPKSAELALLDFLNAEISLAELWSDFSKKDPRFGELARHLRGARVLRQDPLECLIQFL 158

Query:   156 CSSNNNIARITKMVDFLASLGSHLGNVEGFEFHEFPXXXXXXXXXXXXXXNAGFGYRAKY 215
             CSSNNNIARITKMVDF++SLG HLG+++GFEFH+FP               AGFGYRAKY
Sbjct:   159 CSSNNNIARITKMVDFVSSLGLHLGDIDGFEFHQFPSLDRLSRVSEEEFRKAGFGYRAKY 218

Query:   216 ITGTVDVLQSKHSGGAEWLLSLRKLDLQEAIDALCTLPGVGPKVAACIALFSLDQHHAIP 275
             ITGTV+ LQ+K  GG EWLLSLRK++LQEA+ ALCTLPGVGPKVAACIALFSLDQH AIP
Sbjct:   219 ITGTVNALQAKPGGGNEWLLSLRKVELQEAVAALCTLPGVGPKVAACIALFSLDQHSAIP 278

Query:   276 VDTHVWKIATRYLLPELAGVRLTPKLCSRVAEAF 309
             VDTHVW+IAT YLLP+LAG +LTPKL  RVAEAF
Sbjct:   279 VDTHVWQIATNYLLPDLAGAKLTPKLHGRVAEAF 312
GO:0003677 "DNA binding" evidence=IEA
GO:0003684 "damaged DNA binding" evidence=IEA
GO:0003824 "catalytic activity" evidence=IEA
GO:0005634 "nucleus" evidence=ISM
GO:0006281 "DNA repair" evidence=IEA;IDA
GO:0006284 "base-excision repair" evidence=IEA;ISS
GO:0006289 "nucleotide-excision repair" evidence=IEA
GO:0008534 "oxidized purine nucleobase lesion DNA N-glycosylase activity" evidence=IEA;IDA
GO:0006306 "DNA methylation" evidence=RCA
UNIPROTKB|F1P1Z7 OGG1 "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|F1PYD9 OGG1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|O15527 OGG1 "N-glycosylase/DNA lyase" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
MGI|MGI:1097693 Ogg1 "8-oxoguanine DNA-glycosylase 1" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
UNIPROTKB|F1SQF9 OGG1 "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
UNIPROTKB|F1MPV2 OGG1 "Uncharacterized protein" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
RGD|621168 Ogg1 "8-oxoguanine DNA glycosylase" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|O70249 Ogg1 "N-glycosylase/DNA lyase" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
ASPGD|ASPL0000004747 AN6682 [Emericella nidulans (taxid:162425)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q9FNY7OGG1_ARATH4, ., 2, ., 9, 9, ., 1, 80.68910.96140.8191yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer4.2.99LOW CONFIDENCE prediction!
4th Layer4.2.99.18LOW CONFIDENCE prediction!
3rd Layer3.2.20.766

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query311
TIGR00588310 TIGR00588, ogg, 8-oxoguanine DNA-glycosylase (ogg) 3e-60
pfam07934113 pfam07934, OGG_N, 8-oxoguanine DNA glycosylase, N- 1e-29
COG0122285 COG0122, AlkA, 3-methyladenine DNA glycosylase/8-o 3e-28
cd00056158 cd00056, ENDO3c, endonuclease III; includes endonu 7e-26
smart00478149 smart00478, ENDO3c, endonuclease III 1e-20
pfam00730144 pfam00730, HhH-GPD, HhH-GPD superfamily base excis 1e-16
COG0177211 COG0177, Nth, Predicted EndoIII-related endonuclea 7e-13
COG1194 342 COG1194, MutY, A/G-specific DNA glycosylase [DNA r 0.002
TIGR01084 275 TIGR01084, mutY, A/G-specific adenine glycosylase 0.003
TIGR01083191 TIGR01083, nth, endonuclease III 0.004
>gnl|CDD|211589 TIGR00588, ogg, 8-oxoguanine DNA-glycosylase (ogg) Back     alignment and domain information 
 Score =  194 bits (494), Expect = 3e-60
 Identities = 102/257 (39%), Positives = 149/257 (57%), Gaps = 8/257 (3%)

Query: 37  KWTPLNLTQSELSLPLTFPTGQTFRWK-KTGPLQYTGPI---GPHLISLKHLQNGDVCY- 91
           +W  + + +SEL L L   +GQ+FRW+ +  P  ++G +      + +L   +   +C  
Sbjct: 4   RWASIPIPRSELRLDLVLRSGQSFRWRWEESPAHWSGLLVIADQPVWTLTQTEEQLLCTV 63

Query: 92  HIHTSPSEPAAKSALLDFLNMGISLGELWEGFSASDCRFAELAKYLAGARVLRQDPVECL 151
           +    P++   ++ L  +  + +SL +L+  + + D  F  +A+   G R+LRQDP ECL
Sbjct: 64  YRGDKPTQDELETKLEKYFQLDVSLAQLYTHWGSVDKHFQYVAQKFQGVRLLRQDPFECL 123

Query: 152 LQFLCSSNNNIARITKMVDFLASL-GSHLGNVEGFEFHEFPSLERL-SLVSEVELRNAGF 209
           + F+CSSNNNIARIT+MV+ L    G  L  ++G  +H FPSL  L    +E  LR  G 
Sbjct: 124 ISFICSSNNNIARITRMVERLCQAFGPRLITLDGVTYHGFPSLHALTGPEAEAHLRKLGL 183

Query: 210 GYRAKYITGTVDVLQSKHSGGAEWLLSLRKLDLQEAIDALCTLPGVGPKVAACIALFSLD 269
           GYRA+YI  T   L  +  GG  WL  +R    ++A +ALC LPGVGPKVA CI L  LD
Sbjct: 184 GYRARYIRETARAL-LEEQGGRAWLQQIRGASYEDAREALCELPGVGPKVADCICLMGLD 242

Query: 270 QHHAIPVDTHVWKIATR 286
           +  A+PVD HVW+IA R
Sbjct: 243 KPQAVPVDVHVWRIANR 259

All proteins in this family for which functions are known are 8-oxo-guanaine DNA glycosylases that function in base excision repair. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). This family is distantly realted to the Nth-MutY superfamily [DNA metabolism, DNA replication, recombination, and repair]. Length = 310
>gnl|CDD|219650 pfam07934, OGG_N, 8-oxoguanine DNA glycosylase, N-terminal domain Back     alignment and domain information
>gnl|CDD|223200 COG0122, AlkA, 3-methyladenine DNA glycosylase/8-oxoguanine DNA glycosylase [DNA replication, recombination, and repair] Back     alignment and domain information
>gnl|CDD|238013 cd00056, ENDO3c, endonuclease III; includes endonuclease III (DNA-(apurinic or apyrimidinic site) lyase), alkylbase DNA glycosidases (Alka-family) and other DNA glycosidases Back     alignment and domain information
>gnl|CDD|214684 smart00478, ENDO3c, endonuclease III Back     alignment and domain information
>gnl|CDD|216088 pfam00730, HhH-GPD, HhH-GPD superfamily base excision DNA repair protein Back     alignment and domain information
>gnl|CDD|223255 COG0177, Nth, Predicted EndoIII-related endonuclease [DNA replication, recombination, and repair] Back     alignment and domain information
>gnl|CDD|224115 COG1194, MutY, A/G-specific DNA glycosylase [DNA replication, recombination, and repair] Back     alignment and domain information
>gnl|CDD|130156 TIGR01084, mutY, A/G-specific adenine glycosylase Back     alignment and domain information
>gnl|CDD|130155 TIGR01083, nth, endonuclease III Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 311
KOG2875323 consensus 8-oxoguanine DNA glycosylase [Replicatio 100.0
TIGR00588310 ogg 8-oxoguanine DNA-glycosylase (ogg). All protei 100.0
PRK10308283 3-methyl-adenine DNA glycosylase II; Provisional 100.0
COG0122285 AlkA 3-methyladenine DNA glycosylase/8-oxoguanine 100.0
TIGR01083191 nth endonuclease III. This equivalog model identif 99.96
PRK10702211 endonuclease III; Provisional 99.96
COG0177211 Nth Predicted EndoIII-related endonuclease [DNA re 99.96
cd00056158 ENDO3c endonuclease III; includes endonuclease III 99.95
PF07934117 OGG_N: 8-oxoguanine DNA glycosylase, N-terminal do 99.95
PRK13913218 3-methyladenine DNA glycosylase; Provisional 99.95
KOG1918254 consensus 3-methyladenine DNA glycosidase [Replica 99.95
TIGR01084 275 mutY A/G-specific adenine glycosylase. This equiva 99.94
PRK10880 350 adenine DNA glycosylase; Provisional 99.91
smart00478149 ENDO3c endonuclease III. includes endonuclease III 99.91
PRK01229208 N-glycosylase/DNA lyase; Provisional 99.91
PRK13910 289 DNA glycosylase MutY; Provisional 99.85
TIGR03252177 uncharacterized HhH-GPD family protein. This model 99.78
COG2231215 Uncharacterized protein related to Endonuclease II 99.77
KOG1921286 consensus Endonuclease III [Replication, recombina 99.77
COG1194 342 MutY A/G-specific DNA glycosylase [DNA replication 99.77
PF00730108 HhH-GPD: HhH-GPD superfamily base excision DNA rep 99.67
COG1059210 Thermostable 8-oxoguanine DNA glycosylase [DNA rep 99.34
KOG2457 555 consensus A/G-specific adenine DNA glycosylase [Re 99.2
PF0063330 HHH: Helix-hairpin-helix motif; InterPro: IPR00044 97.95
PF06029116 AlkA_N: AlkA N-terminal domain; InterPro: IPR01031 97.37
smart0027826 HhH1 Helix-hairpin-helix DNA-binding motif class 1 95.61
PRK13901196 ruvA Holliday junction DNA helicase RuvA; Provisio 94.85
PF1282664 HHH_2: Helix-hairpin-helix motif; PDB: 1X2I_B 1DGS 94.73
PRK14601183 ruvA Holliday junction DNA helicase RuvA; Provisio 94.57
PRK14606188 ruvA Holliday junction DNA helicase RuvA; Provisio 94.42
TIGR00084191 ruvA Holliday junction DNA helicase, RuvA subunit. 93.77
PRK14602203 ruvA Holliday junction DNA helicase RuvA; Provisio 93.55
COG0632201 RuvA Holliday junction resolvasome, DNA-binding su 93.23
PRK14600186 ruvA Holliday junction DNA helicase RuvA; Provisio 93.05
PF09674232 DUF2400: Protein of unknown function (DUF2400); In 92.91
PRK14603197 ruvA Holliday junction DNA helicase RuvA; Provisio 92.53
PRK14605194 ruvA Holliday junction DNA helicase RuvA; Provisio 92.2
PRK14604195 ruvA Holliday junction DNA helicase RuvA; Provisio 92.2
TIGR02757229 conserved hypothetical protein TIGR02757. Members 92.12
PF1471668 HHH_8: Helix-hairpin-helix domain; PDB: 2W9M_A 1HU 90.81
PF1452060 HHH_5: Helix-hairpin-helix domain; PDB: 3AUO_B 3AU 90.55
PRK00076 196 recR recombination protein RecR; Reviewed 90.55
TIGR00615 195 recR recombination protein RecR. This family is ba 90.26
COG0353 198 RecR Recombinational DNA repair protein (RecF path 90.2
PRK13844 200 recombination protein RecR; Provisional 89.88
TIGR00624179 tag DNA-3-methyladenine glycosylase I. This family 88.76
PRK02515132 psbU photosystem II complex extrinsic protein prec 88.72
PF0311866 RNA_pol_A_CTD: Bacterial RNA polymerase, alpha cha 88.29
smart00483 334 POLXc DNA polymerase X family. includes vertebrate 87.63
TIGR00608218 radc DNA repair protein radc. This family is based 86.62
PF1173193 Cdd1: Pathogenicity locus; InterPro: IPR021725 Cdd 86.27
PRK10353187 3-methyl-adenine DNA glycosylase I; Provisional 85.95
PF1452060 HHH_5: Helix-hairpin-helix domain; PDB: 3AUO_B 3AU 85.48
TIGR01259120 comE comEA protein. This model describes the ComEA 84.66
PF1283665 HHH_3: Helix-hairpin-helix motif; PDB: 2EDU_A 2OCE 84.62
PRK00024224 hypothetical protein; Reviewed 84.14
TIGR00575652 dnlj DNA ligase, NAD-dependent. The member of this 83.37
PF0237187 Transposase_20: Transposase IS116/IS110/IS902 fami 83.21
TIGR00084191 ruvA Holliday junction DNA helicase, RuvA subunit. 82.74
COG1948254 MUS81 ERCC4-type nuclease [DNA replication, recomb 82.67
PRK14605194 ruvA Holliday junction DNA helicase RuvA; Provisio 82.62
KOG2841254 consensus Structure-specific endonuclease ERCC1-XP 82.51
cd00141 307 NT_POLXc Nucleotidyltransferase (NT) domain of fam 82.15
PRK07956665 ligA NAD-dependent DNA ligase LigA; Validated 82.14
PF1039152 DNA_pol_lambd_f: Fingers domain of DNA polymerase 81.04
>KOG2875 consensus 8-oxoguanine DNA glycosylase [Replication, recombination and repair] Back     alignment and domain information 
Probab=100.00  E-value=4.6e-68  Score=480.12  Aligned_cols=276  Identities=46%  Similarity=0.871  Sum_probs=252.3

Q ss_pred             CCCCCcccccCCCCCCCcCcccCCCCCcCceeeCCCceEEeeCCeEEEEEEecCCcEEEEEcCCCC--hHHHHHHHHHhh
Q 021493           33 NKPSKWTPLNLTQSELSLPLTFPTGQTFRWKKTGPLQYTGPIGPHLISLKHLQNGDVCYHIHTSPS--EPAAKSALLDFL  110 (311)
Q Consensus        33 ~~~~~w~~l~~~~~~~~L~~tl~~GQ~Frw~~~~~~~~~gv~~~~~v~l~q~~~~~l~~~~~~~~~--~~~~~~~l~~yf  110 (311)
                      +.+..|.+|+++.++++|+.||.+||+|||++.+.+.|+||+++.+|.++|+++.-+.|.+.++.+  .++..+.|++||
T Consensus         3 ~t~~~w~~i~~~~sEl~L~~tL~sGQsFRWr~~~~~~ysG~lg~~v~~L~Q~ee~~~~y~~~~s~~~p~~del~~i~~yf   82 (323)
T KOG2875|consen    3 STPALWASIPCSRSELDLELTLPSGQSFRWREQSPAHYSGVLGDQVWTLTQTEEQCTVYRGDKSASRPTPDELEAISKYF   82 (323)
T ss_pred             CccccceeccCCHHHcchhhhccCCceeeeecCCcccccceeccEEEEEEecCCceEEEEeecCCCCCChHHHHHHHHHH
Confidence            445679999999999999999999999999999989999999999999999876545566655422  334455899999


Q ss_pred             cCCCCHHHHHHHHhccChhHHHHHHHhcCCccCCCCHHHHHHHHHHhccccHHHHHHHHHHHH-hhCCCCcccccccccc
Q 021493          111 NMGISLGELWEGFSASDCRFAELAKYLAGARVLRQDPVECLLQFLCSSNNNIARITKMVDFLA-SLGSHLGNVEGFEFHE  189 (311)
Q Consensus       111 ~Ld~dl~~~~~~l~~~D~~l~~~~~~~~GlR~l~~dpfe~Li~~IlsQq~~i~~a~~~~~~L~-~~G~~~~~~~~~~~~~  189 (311)
                      +||++|..+|.+|...|+.|.+++.  .|+|+++|||||||++||||+||||++|++|+++|| .||..++.++|..||.
T Consensus        83 ~ldv~L~~l~~~W~~~D~~F~~la~--qgvRlLrQdP~E~lfSFiCSSNNNIaRIT~Mve~fc~~fG~~i~~~dg~~~h~  160 (323)
T KOG2875|consen   83 QLDVTLAQLYHHWGSVDDHFQELAQ--QGVRLLRQDPIECLFSFICSSNNNIARITGMVERFCQAFGPRIIQLDGVDYHG  160 (323)
T ss_pred             hheeeHHHHHHHhCcCChHHHHHHH--hhhHHHhcCcHHHHHHHHhcCCCcHHHHHHHHHHHHHhhCcceEeecCccccc
Confidence            9999999999999999999999998  899999999999999999999999999999999999 8999999999999999


Q ss_pred             CCCHHHHh-cCCHHHHHHcCCchHHHHHHHHHHHHHHhcCCCccchhhhhCCCHHHHHHHhhcCCccchHHHHHHHHHhc
Q 021493          190 FPSLERLS-LVSEVELRNAGFGYRAKYITGTVDVLQSKHSGGAEWLLSLRKLDLQEAIDALCTLPGVGPKVAACIALFSL  268 (311)
Q Consensus       190 FPtpe~La-~~~~e~Lr~~Glg~RA~~I~~~A~~i~~~~~gg~~~l~~L~~~~~~e~~~~L~~l~GIG~ktAd~vlLf~l  268 (311)
                      |||.++|+ ...+++||++|||||||||..+|++|.++.+ |.-||..|++++++|++++|+.+||||+|||||||||+|
T Consensus       161 FPsl~~L~g~~~Ea~LR~~gfGYRAkYI~~ta~~l~~~~g-~~~wLqsl~~~~yeear~~L~~lpGVG~KVADCI~Lm~l  239 (323)
T KOG2875|consen  161 FPSLQALAGPEVEAELRKLGFGYRAKYISATARALQEKQG-GLAWLQSLRKSSYEEAREALCSLPGVGPKVADCICLMSL  239 (323)
T ss_pred             CccHHHhcCcHhHHHHHHcCcchhHHHHHHHHHHHHHhcc-cchHHHHHhcccHHHHHHHHhcCCCCcchHhhhhhhhhc
Confidence            99999999 5678999999999999999999999999865 567999999999999999999999999999999999999


Q ss_pred             CCCCccccchHHHHHHHHcCCCcccCCC-CCHHHHHHHHHHhhC
Q 021493          269 DQHHAIPVDTHVWKIATRYLLPELAGVR-LTPKLCSRVAEAFCE  311 (311)
Q Consensus       269 ~~~d~fPVDt~v~Ri~~r~~~~~~~~~~-~t~k~y~~i~~~~~~  311 (311)
                      +...++|||+||+|+++.++++...++. +++|.|.+++.+|++
T Consensus       240 ~~~~~VPVDvHi~ria~~y~l~~~~g~k~l~~ki~~ev~~~f~~  283 (323)
T KOG2875|consen  240 DKLSAVPVDVHIWRIAQDYILPGLSGAKELTPKINGEVSNFFRS  283 (323)
T ss_pred             CCCCcccchhhHHHHhhcccCCCccccccCCcchhHHHHHHHHH
Confidence            9999999999999999977777666544 999999999988863

>TIGR00588 ogg 8-oxoguanine DNA-glycosylase (ogg) Back     alignment and domain information
>PRK10308 3-methyl-adenine DNA glycosylase II; Provisional Back     alignment and domain information
>COG0122 AlkA 3-methyladenine DNA glycosylase/8-oxoguanine DNA glycosylase [DNA replication, recombination, and repair] Back     alignment and domain information
>TIGR01083 nth endonuclease III Back     alignment and domain information
>PRK10702 endonuclease III; Provisional Back     alignment and domain information
>COG0177 Nth Predicted EndoIII-related endonuclease [DNA replication, recombination, and repair] Back     alignment and domain information
>cd00056 ENDO3c endonuclease III; includes endonuclease III (DNA-(apurinic or apyrimidinic site) lyase), alkylbase DNA glycosidases (Alka-family) and other DNA glycosidases Back     alignment and domain information
>PF07934 OGG_N: 8-oxoguanine DNA glycosylase, N-terminal domain; InterPro: IPR012904 The presence of 8-oxoguanine residues in DNA can give rise to G-C to T-A transversion mutations Back     alignment and domain information
>PRK13913 3-methyladenine DNA glycosylase; Provisional Back     alignment and domain information
>KOG1918 consensus 3-methyladenine DNA glycosidase [Replication, recombination and repair] Back     alignment and domain information
>TIGR01084 mutY A/G-specific adenine glycosylase Back     alignment and domain information
>PRK10880 adenine DNA glycosylase; Provisional Back     alignment and domain information
>smart00478 ENDO3c endonuclease III Back     alignment and domain information
>PRK01229 N-glycosylase/DNA lyase; Provisional Back     alignment and domain information
>PRK13910 DNA glycosylase MutY; Provisional Back     alignment and domain information
>TIGR03252 uncharacterized HhH-GPD family protein Back     alignment and domain information
>COG2231 Uncharacterized protein related to Endonuclease III [DNA replication, recombination, and repair] Back     alignment and domain information
>KOG1921 consensus Endonuclease III [Replication, recombination and repair] Back     alignment and domain information
>COG1194 MutY A/G-specific DNA glycosylase [DNA replication, recombination, and repair] Back     alignment and domain information
>PF00730 HhH-GPD: HhH-GPD superfamily base excision DNA repair protein This entry corresponds to Endonuclease III This entry corresponds to Alkylbase DNA glycosidase; InterPro: IPR003265 Endonuclease III (4 Back     alignment and domain information
>COG1059 Thermostable 8-oxoguanine DNA glycosylase [DNA replication, recombination, and repair] Back     alignment and domain information
>KOG2457 consensus A/G-specific adenine DNA glycosylase [Replication, recombination and repair] Back     alignment and domain information
>PF00633 HHH: Helix-hairpin-helix motif; InterPro: IPR000445 The HhH motif is an around 20 amino acids domain present in prokaryotic and eukaryotic non-sequence-specific DNA binding proteins [, , ] Back     alignment and domain information
>PF06029 AlkA_N: AlkA N-terminal domain; InterPro: IPR010316 This domain is found at the N terminus of bacterial AlkA 3 Back     alignment and domain information
>smart00278 HhH1 Helix-hairpin-helix DNA-binding motif class 1 Back     alignment and domain information
>PRK13901 ruvA Holliday junction DNA helicase RuvA; Provisional Back     alignment and domain information
>PF12826 HHH_2: Helix-hairpin-helix motif; PDB: 1X2I_B 1DGS_A 1V9P_B Back     alignment and domain information
>PRK14601 ruvA Holliday junction DNA helicase RuvA; Provisional Back     alignment and domain information
>PRK14606 ruvA Holliday junction DNA helicase RuvA; Provisional Back     alignment and domain information
>TIGR00084 ruvA Holliday junction DNA helicase, RuvA subunit Back     alignment and domain information
>PRK14602 ruvA Holliday junction DNA helicase RuvA; Provisional Back     alignment and domain information
>COG0632 RuvA Holliday junction resolvasome, DNA-binding subunit [DNA replication, recombination, and repair] Back     alignment and domain information
>PRK14600 ruvA Holliday junction DNA helicase RuvA; Provisional Back     alignment and domain information
>PF09674 DUF2400: Protein of unknown function (DUF2400); InterPro: IPR014127 Members of this uncharacterised protein family are found sporadically, so far only among spirochetes, epsilon and delta proteobacteria, and Bacteroides Back     alignment and domain information
>PRK14603 ruvA Holliday junction DNA helicase RuvA; Provisional Back     alignment and domain information
>PRK14605 ruvA Holliday junction DNA helicase RuvA; Provisional Back     alignment and domain information
>PRK14604 ruvA Holliday junction DNA helicase RuvA; Provisional Back     alignment and domain information
>TIGR02757 conserved hypothetical protein TIGR02757 Back     alignment and domain information
>PF14716 HHH_8: Helix-hairpin-helix domain; PDB: 2W9M_A 1HUZ_A 1HUO_A 2BPG_B 2BPF_A 1DK3_A 1BPE_A 1BNO_A 1BNP_A 1DK2_A Back     alignment and domain information
>PF14520 HHH_5: Helix-hairpin-helix domain; PDB: 3AUO_B 3AU6_A 3AU2_A 3B0X_A 3B0Y_A 1SZP_C 3LDA_A 1WCN_A 2JZB_B 2ZTC_A Back     alignment and domain information
>PRK00076 recR recombination protein RecR; Reviewed Back     alignment and domain information
>TIGR00615 recR recombination protein RecR Back     alignment and domain information
>COG0353 RecR Recombinational DNA repair protein (RecF pathway) [DNA replication, recombination, and repair] Back     alignment and domain information
>PRK13844 recombination protein RecR; Provisional Back     alignment and domain information
>TIGR00624 tag DNA-3-methyladenine glycosylase I Back     alignment and domain information
>PRK02515 psbU photosystem II complex extrinsic protein precursor U; Provisional Back     alignment and domain information
>PF03118 RNA_pol_A_CTD: Bacterial RNA polymerase, alpha chain C terminal domain; InterPro: IPR011260 The core of the bacterial RNA polymerase (RNAP) consists of four subunits, two alpha, a beta and a beta', which are conserved from bacteria to mammals Back     alignment and domain information
>smart00483 POLXc DNA polymerase X family Back     alignment and domain information
>TIGR00608 radc DNA repair protein radc Back     alignment and domain information
>PF11731 Cdd1: Pathogenicity locus; InterPro: IPR021725 Cdd1 is expressed as part of the pathogenicity locus operon in several different orders of bacteria [] Back     alignment and domain information
>PRK10353 3-methyl-adenine DNA glycosylase I; Provisional Back     alignment and domain information
>PF14520 HHH_5: Helix-hairpin-helix domain; PDB: 3AUO_B 3AU6_A 3AU2_A 3B0X_A 3B0Y_A 1SZP_C 3LDA_A 1WCN_A 2JZB_B 2ZTC_A Back     alignment and domain information
>TIGR01259 comE comEA protein Back     alignment and domain information
>PF12836 HHH_3: Helix-hairpin-helix motif; PDB: 2EDU_A 2OCE_A 3BZK_A 3BZC_A 2DUY_A Back     alignment and domain information
>PRK00024 hypothetical protein; Reviewed Back     alignment and domain information
>TIGR00575 dnlj DNA ligase, NAD-dependent Back     alignment and domain information
>PF02371 Transposase_20: Transposase IS116/IS110/IS902 family; InterPro: IPR003346 Transposases are needed for efficient transposition of the insertion sequence or transposon DNA Back     alignment and domain information
>TIGR00084 ruvA Holliday junction DNA helicase, RuvA subunit Back     alignment and domain information
>COG1948 MUS81 ERCC4-type nuclease [DNA replication, recombination, and repair] Back     alignment and domain information
>PRK14605 ruvA Holliday junction DNA helicase RuvA; Provisional Back     alignment and domain information
>KOG2841 consensus Structure-specific endonuclease ERCC1-XPF, ERCC1 component [Replication, recombination and repair] Back     alignment and domain information
>cd00141 NT_POLXc Nucleotidyltransferase (NT) domain of family X DNA Polymerases Back     alignment and domain information
>PRK07956 ligA NAD-dependent DNA ligase LigA; Validated Back     alignment and domain information
>PF10391 DNA_pol_lambd_f: Fingers domain of DNA polymerase lambda; InterPro: IPR018944 DNA polymerases catalyse the addition of dNMPs onto the 3-prime ends of DNA chains Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query311
1hu0_A324 Crystal Structure Of An Hogg1-Dna Borohydride Trapp 1e-45
1ko9_A345 Native Structure Of The Human 8-Oxoguanine Dna Glyc 1e-45
2noz_A325 Structure Of Q315f Human 8-Oxoguanine Glycosylase D 1e-45
1fn7_A317 Coupling Of Damage Recognition And Catalysis By A H 2e-45
3ih7_A316 Crystal Structure Of Catalytically Active Human 8-O 2e-45
2nol_A325 Structure Of Catalytically Inactive Human 8-Oxoguan 3e-45
1ebm_A317 Crystal Structure Of The Human 8-Oxoguanine Glycosy 3e-45
2noh_A325 Structure Of Catalytically Inactive Q315a Human 8- 3e-45
1n39_A317 Structural And Biochemical Exploration Of A Critica 4e-45
1n3c_A317 Structural And Biochemical Exploration Of A Critica 5e-45
1n3a_A317 Structural And Biochemical Exploration Of A Critica 6e-45
2noe_A325 Structure Of Catalytically Inactive G42a Human 8-Ox 1e-44
1yqk_A319 Human 8-Oxoguanine Glycosylase Crosslinked With Gua 1e-44
3ktu_A317 Structure Of Human 8-Oxoguanine Glycosylase 1 Bound 1e-44
2nof_A325 Structure Of Q315f Human 8-oxoguanine Glycosylase P 1e-44
2i5w_A315 Structure Of Hogg1 Crosslinked To Dna Sampling A No 1e-44
1yql_A319 Catalytically Inactive Hogg1 Crosslinked With 7-Dea 3e-44
2noi_A325 Structure Of G42a Human 8-Oxoguanine Glycosylase Cr 1e-43
2nob_A325 Structure Of Catalytically Inactive H270a Human 8- 4e-43
2xhi_A360 Separation-Of-Function Mutants Unravel The Dual Rea 9e-43
3i0w_A290 Crystal Structure Of Clostridium Acetobutylicum 8-O 3e-23
3f10_A292 Crystal Structure Of Clostridium Acetobutylicum 8-O 3e-23
3i0x_A291 Crystal Structure Of Clostridium Acetobutylicum 8-O 3e-23
3f0z_A292 Crystal Structure Of Clostridium Acetobutylicum 8-O 3e-23
>pdb|1HU0|A Chain A, Crystal Structure Of An Hogg1-Dna Borohydride Trapped Intermediate Complex Length = 324 Back     alignment and structure 
Iteration: 1

 Score =  180 bits (456), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 94/256 (36%), Positives = 138/256 (53%), Gaps = 8/256 (3%)
Query: 38  WTPLNLTQSELSLPLTFPTGQTFRWKKTGPLQYTGPIGPHLISLKHLQNGDVCYHIHTSP 97
           W  +   +SEL L L  P+GQ+FRW++  P  ++G +   + +L   +    C       
Sbjct: 20  WASIPCPRSELRLDLVLPSGQSFRWREQSPAHWSGVLADQVWTLTQTEEQLHCTVYRGDK 79
Query: 98  SE-----PAAKSALLDFLNMGISLGELWEGFSASDCRFAELAKYLAGARVLRQDPVECLL 152
           S+     P    A+  +  + ++L +L+  + + D  F E+A+   G R+LRQDP+ECL 
Sbjct: 80  SQASRPTPDELEAVRKYFQLDVTLAQLYHHWGSVDSHFQEVAQKFQGVRLLRQDPIECLF 139
Query: 153 QFLCSSNNNIARITKMVDFL-ASLGSHLGNVEGFEFHEFPXXXXXXXXXXXXXXNA-GFG 210
            F+CSSNNNIARIT MV+ L  + G  L  ++   +H FP                 G G
Sbjct: 140 SFICSSNNNIARITGMVERLCQAFGPRLIQLDDVTYHGFPSLQALAGPEVEAHLRKLGLG 199
Query: 211 YRAKYITGTVDVLQSKHSGGAEWLLSLRKLDLQEAIDALCTLPGVGPKVAACIALFSLDQ 270
           YRA+Y++ +   +  +  GG  WL  LR+   +EA  ALC LPGVG KVA CI L +LD+
Sbjct: 200 YRARYVSASARAILEEQ-GGLAWLQQLRESSYEEAHKALCILPGVGTKVADCICLMALDK 258
Query: 271 HHAIPVDTHVWKIATR 286
             A+PVD H+W IA R
Sbjct: 259 PQAVPVDVHMWHIAQR 274
>pdb|1KO9|A Chain A, Native Structure Of The Human 8-Oxoguanine Dna Glycosylase Hogg1 Length = 345 Back     alignment and structure
>pdb|2NOZ|A Chain A, Structure Of Q315f Human 8-Oxoguanine Glycosylase Distal Crosslink To 8-Oxoguanine Dna Length = 325 Back     alignment and structure
>pdb|1FN7|A Chain A, Coupling Of Damage Recognition And Catalysis By A Human Base-Excision Dna Repair Protein Length = 317 Back     alignment and structure
>pdb|3IH7|A Chain A, Crystal Structure Of Catalytically Active Human 8-Oxoguanine Glycosylase Distally Crosslinked To Guanine-Containing Dna Length = 316 Back     alignment and structure
>pdb|2NOL|A Chain A, Structure Of Catalytically Inactive Human 8-Oxoguanine Glycosylase Distal Crosslink To Oxog Dna Length = 325 Back     alignment and structure
>pdb|1EBM|A Chain A, Crystal Structure Of The Human 8-Oxoguanine Glycosylase (Hogg1) Bound To A Substrate Oligonucleotide Length = 317 Back     alignment and structure
>pdb|2NOH|A Chain A, Structure Of Catalytically Inactive Q315a Human 8- Oxoguanine Glycosylase Complexed To 8-oxoguanine Dna Length = 325 Back     alignment and structure
>pdb|1N39|A Chain A, Structural And Biochemical Exploration Of A Critical Amino Acid In Human 8-Oxoguanine Glycosylase Length = 317 Back     alignment and structure
>pdb|1N3C|A Chain A, Structural And Biochemical Exploration Of A Critical Amino Acid In Human 8-oxoguanine Glycosylase Length = 317 Back     alignment and structure
>pdb|1N3A|A Chain A, Structural And Biochemical Exploration Of A Critical Amino Acid In Human 8-Oxoguanine Glycosylase Length = 317 Back     alignment and structure
>pdb|2NOE|A Chain A, Structure Of Catalytically Inactive G42a Human 8-Oxoguanine Glycosylase Complexed To 8-Oxoguanine Dna Length = 325 Back     alignment and structure
>pdb|1YQK|A Chain A, Human 8-Oxoguanine Glycosylase Crosslinked With Guanine Containing Dna Length = 319 Back     alignment and structure
>pdb|3KTU|A Chain A, Structure Of Human 8-Oxoguanine Glycosylase 1 Bound To Fluorninated Oxog-Containing Dna Length = 317 Back     alignment and structure
>pdb|2NOF|A Chain A, Structure Of Q315f Human 8-oxoguanine Glycosylase Proximal Crosslink To 8-oxoguanine Dna Length = 325 Back     alignment and structure
>pdb|2I5W|A Chain A, Structure Of Hogg1 Crosslinked To Dna Sampling A Normal G Adjacent To An Oxog Length = 315 Back     alignment and structure
>pdb|1YQL|A Chain A, Catalytically Inactive Hogg1 Crosslinked With 7-Deaza-8- Azaguanine Containing Dna Length = 319 Back     alignment and structure
>pdb|2NOI|A Chain A, Structure Of G42a Human 8-Oxoguanine Glycosylase Crosslinked To Undamaged G-Containing Dna Length = 325 Back     alignment and structure
>pdb|2NOB|A Chain A, Structure Of Catalytically Inactive H270a Human 8- Oxoguanine Glycosylase Crosslinked To 8-Oxoguanine Dna Length = 325 Back     alignment and structure
>pdb|2XHI|A Chain A, Separation-Of-Function Mutants Unravel The Dual Reaction Mode Of Human 8-Oxoguanine Dna Glycosylase Length = 360 Back     alignment and structure
>pdb|3I0W|A Chain A, Crystal Structure Of Clostridium Acetobutylicum 8-Oxoguanine GlycosylaseLYASE IN COMPLEX WITH DSDNA CONTAINING CYTOSINE Opposite To 8-Oxog Length = 290 Back     alignment and structure
>pdb|3F10|A Chain A, Crystal Structure Of Clostridium Acetobutylicum 8-Oxoguanine Dna Glycosylase In Complex With 8-Oxoguanosine Length = 292 Back     alignment and structure
>pdb|3I0X|A Chain A, Crystal Structure Of Clostridium Acetobutylicum 8-Oxoguanine GlycosylaseLYASE IN COMPLEX WITH DSDNA CONTAINING ADENINE Opposite To 8-Oxog Length = 291 Back     alignment and structure
>pdb|3F0Z|A Chain A, Crystal Structure Of Clostridium Acetobutylicum 8-Oxoguanine GlycosylaseLYASE IN ITS APO-Form Length = 292 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query311
2xhi_A360 N-glycosylase/DNA lyase; lyase-DNA complex, lyase/ 4e-79
3i0w_A290 8-oxoguanine-DNA-glycosylase; OGG, cacogg, DNA, 8- 8e-75
2jhn_A295 ALKA, 3-methyladenine DNA-glycosylase; DNA repair, 2e-22
3fhg_A207 Mjogg, N-glycosylase/DNA lyase, DNA-(apurinic; hel 1e-12
1pu6_A218 3-methyladenine DNA glycosylase; helix-hairpin-hel 4e-12
1mpg_A282 ALKA, 3-methyladenine DNA glycosylase II; DNA repa 5e-10
3n0u_A219 Probable N-glycosylase/DNA lyase; structural genom 8e-07
2yg9_A225 DNA-3-methyladenine glycosidase II, putative; hydr 2e-06
3s6i_A228 DNA-3-methyladenine glycosylase 1; DNA glycosylase 2e-06
2h56_A233 DNA-3-methyladenine glycosidase; 10174367, EC 3.2. 3e-06
1orn_A226 Endonuclease III; DNA repair, DNA glycosylase, [4F 3e-05
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 8e-05
2abk_A211 Endonuclease III; DNA-repair, DNA glycosylase; 1.8 8e-05
1kea_A221 Possible G-T mismatches repair enzyme; DNA repair, 3e-04
1kg2_A225 A/G-specific adenine glycosylase; DNA repair, hydr 4e-04
3fhf_A214 Mjogg, N-glycosylase/DNA lyase, DNA-(apurinic; hel 7e-04
>2xhi_A N-glycosylase/DNA lyase; lyase-DNA complex, lyase/DNA complex, separation-OF-function helix-hairpin-helix, DNA repair; HET: 8OG; 1.55A {Homo sapiens} PDB: 1ko9_A 1lwy_A* 1hu0_A* 1lwv_A* 1lww_A* 2noe_A* 2noh_A* 2nol_A* 1n3c_A* 1fn7_A* 2noz_A* 1yqk_A 1yqr_A* 1yql_A* 1yqm_A* 2noi_A 1ebm_A* 1m3q_A* 1m3h_A* 1n39_A* ... Length = 360 Back     alignment and structure
 Score =  243 bits (622), Expect = 4e-79
 Identities = 104/316 (32%), Positives = 156/316 (49%), Gaps = 14/316 (4%)

Query: 6   NSPSPLKRPRLTPQPPPTPPNPQTLTTNKPSKWTPLNLTQSELSLPLTFPTGQTFRWKKT 65
           +S  P   P     P            + P+ W  +   +SEL L L  P+GQ+FRW++ 
Sbjct: 9   HSQDPNSMPARALLPRRMGHRT---LASTPALWASIPCPRSELRLDLVLPSGQSFRWREQ 65

Query: 66  GPLQYTGPIGPHLISLKHLQNGDVCYHIHT-----SPSEPAAKSALLDFLNMGISLGELW 120
            P  ++G +   + +L   +    C          S   P    A+  +  + ++L +L+
Sbjct: 66  SPAHWSGVLADQVWTLTQTEEQLHCTVYRGDKSQASRPTPDELEAVRKYFQLDVTLAQLY 125

Query: 121 EGFSASDCRFAELAKYLAGARVLRQDPVECLLQFLCSSNNNIARITKMVDFLAS-LGSHL 179
             + + D  F E+A+   G R+LRQDP+ECL  F+CSSNNNIARIT MV+ L    G  L
Sbjct: 126 HHWGSVDSHFQEVAQKFQGVRLLRQDPIECLFSFICSSNNNIARITGMVERLCQAFGPRL 185

Query: 180 GNVEGFEFHEFPSLERLSLVS-EVELRNAGFGYRAKYITGTVDVLQSKHSGGAEWLLSLR 238
             ++   +H FPSL+ L+    E  LR  G GYRA+Y++ +   +  +  GG  WL  LR
Sbjct: 186 IQLDDVTYHGFPSLQALAGPEVEAHLRKLGLGYRARYVSASARAILEEQ-GGLAWLQQLR 244

Query: 239 KLDLQEAIDALCTLPGVGPKVAACIALFSLDQHHAIPVDTHVWKIATRYLLPELAGVR-- 296
           +   +EA  ALC LPGVG  VA  I L +LD+  A+PV+ H+W IA R         +  
Sbjct: 245 ESSYEEAHKALCILPGVGTCVADKICLMALDKPQAVPVNVHMWHIAQRDYSWHPTTSQAK 304

Query: 297 -LTPKLCSRVAEAFCE 311
             +P+    +   F  
Sbjct: 305 GPSPQTNKELGNFFRS 320
>3i0w_A 8-oxoguanine-DNA-glycosylase; OGG, cacogg, DNA, 8-OXOG, 8OXOG, glycosylase, cytosine, hydrolase,lyase/DNA complex; HET: 8OG; 1.73A {Clostridium acetobutylicum} PDB: 3i0x_A* 3f10_A* 3f0z_A Length = 290 Back     alignment and structure
>2jhn_A ALKA, 3-methyladenine DNA-glycosylase; DNA repair, N1-methyladenine, N3-methylcytosine, hyperthermophiles, hydrolase; HET: MBO MES; 1.8A {Archaeoglobus fulgidus} PDB: 2jhj_A Length = 295 Back     alignment and structure
>3fhg_A Mjogg, N-glycosylase/DNA lyase, DNA-(apurinic; helix-hairpin-helix, 8-oxoguanine, 8-OXOG, DNA damage, DNA repair, glycosidase, hydrolase; 1.90A {Sulfolobus solfataricus} Length = 207 Back     alignment and structure
>1pu6_A 3-methyladenine DNA glycosylase; helix-hairpin-helix, base excision repair, hydrolase; HET: KCX; 1.64A {Helicobacter pylori} SCOP: a.96.1.5 PDB: 1pu7_A* 1pu8_A* Length = 218 Back     alignment and structure
>1mpg_A ALKA, 3-methyladenine DNA glycosylase II; DNA repair, base excision, methylation, ALK hydrolase; 1.80A {Escherichia coli} SCOP: a.96.1.3 d.129.1.2 PDB: 1diz_A 1pvs_A* 3cvs_A* 3cvt_A* 3cw7_A* 3cwa_A* 3cws_A* 3cwt_A* 3cwu_A* 3d4v_A* 3ogd_A* 3oh9_A* 3oh6_A* Length = 282 Back     alignment and structure
>3n0u_A Probable N-glycosylase/DNA lyase; structural genomics, ISFI, DNA repair, 8-oxoguanine, base EX repair, PSI-2, protein structure initiative; 1.50A {Thermotoga maritima} Length = 219 Back     alignment and structure
>2yg9_A DNA-3-methyladenine glycosidase II, putative; hydrolase, DNA repair; 1.95A {Deinococcus radiodurans} PDB: 2yg8_A Length = 225 Back     alignment and structure
>3s6i_A DNA-3-methyladenine glycosylase 1; DNA glycosylase, DNA repair, helix-hairpin-helix (HHH), ABAS tetrahydrofuran (THF); HET: 3DR; 2.28A {Schizosaccharomyces pombe} Length = 228 Back     alignment and structure
>2h56_A DNA-3-methyladenine glycosidase; 10174367, EC 3.2.2.-, struc genomics, PSI-2, protein structure initiative, joint center structural genomics; 2.55A {Bacillus halodurans} Length = 233 Back     alignment and structure
>1orn_A Endonuclease III; DNA repair, DNA glycosylase, [4Fe-4S] cluster, iron-sulfur cluster, hydrolase/DNA complex; HET: PED; 1.70A {Geobacillus stearothermophilus} SCOP: a.96.1.1 PDB: 1orp_A* 1p59_A* Length = 226 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>2abk_A Endonuclease III; DNA-repair, DNA glycosylase; 1.85A {Escherichia coli} SCOP: a.96.1.1 Length = 211 Back     alignment and structure
>1kea_A Possible G-T mismatches repair enzyme; DNA repair, DNA glycosylase, DNA mismatch, methylation; 2.00A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.96.1.2 Length = 221 Back     alignment and structure
>1kg2_A A/G-specific adenine glycosylase; DNA repair, hydrolase; 1.20A {Escherichia coli} SCOP: a.96.1.2 PDB: 1kg3_A 1muy_A 1kg6_A 1kg5_A 1mun_A 1mud_A 1kg4_A 1weg_A 1wei_A* 1wef_A* 1kg7_A 1kqj_A Length = 225 Back     alignment and structure
>3fhf_A Mjogg, N-glycosylase/DNA lyase, DNA-(apurinic; helix-hairpin-helix, 8-oxoguanine, 8-OXOG, DNA damage, DNA repair, glycosidase; 2.00A {Methanocaldococcus jannaschii} PDB: 3knt_A* Length = 214 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query311
3i0w_A290 8-oxoguanine-DNA-glycosylase; OGG, cacogg, DNA, 8- 100.0
2xhi_A360 N-glycosylase/DNA lyase; lyase-DNA complex, lyase/ 100.0
2jhn_A295 ALKA, 3-methyladenine DNA-glycosylase; DNA repair, 100.0
4b21_A232 Probable DNA-3-methyladenine glycosylase 2; hydrol 100.0
1mpg_A282 ALKA, 3-methyladenine DNA glycosylase II; DNA repa 100.0
3s6i_A228 DNA-3-methyladenine glycosylase 1; DNA glycosylase 100.0
2yg9_A225 DNA-3-methyladenine glycosidase II, putative; hydr 100.0
2h56_A233 DNA-3-methyladenine glycosidase; 10174367, EC 3.2. 100.0
2abk_A211 Endonuclease III; DNA-repair, DNA glycosylase; 1.8 99.96
1orn_A226 Endonuclease III; DNA repair, DNA glycosylase, [4F 99.96
1kea_A221 Possible G-T mismatches repair enzyme; DNA repair, 99.95
1pu6_A218 3-methyladenine DNA glycosylase; helix-hairpin-hel 99.95
1kg2_A225 A/G-specific adenine glycosylase; DNA repair, hydr 99.95
3fhg_A207 Mjogg, N-glycosylase/DNA lyase, DNA-(apurinic; hel 99.95
3n0u_A219 Probable N-glycosylase/DNA lyase; structural genom 99.95
3n5n_X287 A/G-specific adenine DNA glycosylase; alpha-helice 99.94
3fsp_A 369 A/G-specific adenine glycosylase; protein-DNA comp 99.93
3fhf_A214 Mjogg, N-glycosylase/DNA lyase, DNA-(apurinic; hel 99.93
4e9f_A161 Methyl-CPG-binding domain protein 4; HHH DNA glyco 99.88
4glx_A586 DNA ligase; inhibitor, ligase-ligase inhibitor-DNA 92.43
3vdp_A 212 Recombination protein RECR; zinc finger, DNA repai 91.38
1vdd_A 228 Recombination protein RECR; helix-hairpin-helix, z 90.35
2fmp_A 335 DNA polymerase beta; nucleotidyl transferase, tran 90.18
2ihm_A 360 POL MU, DNA polymerase MU; helix-turn-helix, trans 90.17
1x2i_A75 HEF helicase/nuclease; alpha helix, helix-hairpin- 88.96
4gfj_A685 Topoisomerase V; helix-hairpin-helix, DNA repair e 88.53
2owo_A671 DNA ligase; protein-DNA complex, ligase-DNA comple 87.83
2a1j_B91 DNA excision repair protein ERCC-1; XPF, xeroderma 87.42
2duy_A75 Competence protein comea-related protein; helix-ha 87.2
1z00_A89 DNA excision repair protein ERCC-1; helix-hairpin- 86.88
1kft_A78 UVRC, excinuclease ABC subunit C; helix-hairpin-he 86.44
2ztd_A212 Holliday junction ATP-dependent DNA helicase RUVA; 85.98
2edu_A98 Kinesin-like protein KIF22; kinesin-like DNA bindi 85.86
1jms_A 381 Terminal deoxynucleotidyltransferase; polymerase; 85.66
2bcq_A 335 DNA polymerase lambda; misalignment, extrahelical, 85.23
1dgs_A667 DNA ligase; AMP complex, NAD+-dependent; HET: DNA 85.13
3arc_U97 Photosystem II 12 kDa extrinsic protein; PSII, mem 84.68
2duy_A75 Competence protein comea-related protein; helix-ha 84.62
2ztd_A212 Holliday junction ATP-dependent DNA helicase RUVA; 82.75
1z00_B84 DNA repair endonuclease XPF; helix-hairpin-helix, 82.21
3b0x_A 575 DNA polymerase beta family (X family); structural 81.4
>3i0w_A 8-oxoguanine-DNA-glycosylase; OGG, cacogg, DNA, 8-OXOG, 8OXOG, glycosylase, cytosine, hydrolase,lyase/DNA complex; HET: 8OG; 1.73A {Clostridium acetobutylicum} PDB: 3i0x_A* 3f10_A* 3f0z_A Back     alignment and structure
Probab=100.00  E-value=4.4e-60  Score=443.15  Aligned_cols=253  Identities=30%  Similarity=0.490  Sum_probs=232.0

Q ss_pred             CCCCCCcCcccCCCCCcCceeeCCCceEEeeCCeEEEEEEecCCcEEEEEcCCCChHHHHHHHHHhhcCCCCHHHHHHHH
Q 021493           44 TQSELSLPLTFPTGQTFRWKKTGPLQYTGPIGPHLISLKHLQNGDVCYHIHTSPSEPAAKSALLDFLNMGISLGELWEGF  123 (311)
Q Consensus        44 ~~~~~~L~~tl~~GQ~Frw~~~~~~~~~gv~~~~~v~l~q~~~~~l~~~~~~~~~~~~~~~~l~~yf~Ld~dl~~~~~~l  123 (311)
                      ..++|||+.||+|||||||++.+++.|+||++++++.|+|.++ .+.  +++ .+.+++.+.+++||+||.|++.+++.+
T Consensus        17 ~~~~~~l~~tl~~GQ~Frw~~~~~~~~~~v~~~~~~~l~q~~~-~~~--~~~-~~~~~~~~~~~~~fdLd~d~~~~~~~l   92 (290)
T 3i0w_A           17 NVENFELKDIFDCGQCFRWHRQENGNYIGIAFEKVVEVQKIGE-DVV--IYN-INEEEFKNVWSEYFDLYRDYGEIKKEL   92 (290)
T ss_dssp             SCCSCCHHHHHSSSSCSSEEECTTSCEEEEETTEEEEEEEETT-EEE--EET-CCHHHHHHTHHHHTTTTSCHHHHHHHH
T ss_pred             ecccCcHHHHhCccCccCcEEeCCCeEEEEECCEEEEEEEcCC-EEE--EEc-CCHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence            4568999999999999999999888999999999999999854 443  332 356788899999999999999999999


Q ss_pred             hccChhHHHHHHHhcCCccCCCCHHHHHHHHHHhccccHHHHHHHHHHHH-hhCCCCccccccccccCCCHHHHhcCCHH
Q 021493          124 SASDCRFAELAKYLAGARVLRQDPVECLLQFLCSSNNNIARITKMVDFLA-SLGSHLGNVEGFEFHEFPSLERLSLVSEV  202 (311)
Q Consensus       124 ~~~D~~l~~~~~~~~GlR~l~~dpfe~Li~~IlsQq~~i~~a~~~~~~L~-~~G~~~~~~~~~~~~~FPtpe~La~~~~e  202 (311)
                      + .||.|+++++.++|+|++++||||+||++|||||+++++|.+++++|+ +||+++ +.++..++.||||++|++++++
T Consensus        93 ~-~Dp~l~~~~~~~~glR~~~~dpfE~Lv~~IlsQq~s~~~a~~~~~rL~~~~G~~~-~~~g~~~~~fPtpe~la~~~~e  170 (290)
T 3i0w_A           93 S-RDPLLKKSVDFGEGIRILRQDPFEILLSFIISANNRIPMIKKCINNISEKAGKKL-EYKGKIYYAFPTVDKLHEFTEK  170 (290)
T ss_dssp             T-TSHHHHHHHHHTTTCCCCCCCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHSCEE-EETTEEEECCCCHHHHTTCCHH
T ss_pred             h-hCHHHHHHHHHCCCCCCCCCCHHHHHHHHHHhCcccHHHHHHHHHHHHHHhCCCc-ccCCcccccCCcHHHHHCCCHH
Confidence            8 899999999999999999999999999999999999999999999999 899998 7788889999999999999999


Q ss_pred             HHHHcCCchHHHHHHHHHHHHHHhcCCCccchhhhhCCCHHHHHHHhhcCCccchHHHHHHHHHhcCCCCccccchHHHH
Q 021493          203 ELRNAGFGYRAKYITGTVDVLQSKHSGGAEWLLSLRKLDLQEAIDALCTLPGVGPKVAACIALFSLDQHHAIPVDTHVWK  282 (311)
Q Consensus       203 ~Lr~~Glg~RA~~I~~~A~~i~~~~~gg~~~l~~L~~~~~~e~~~~L~~l~GIG~ktAd~vlLf~l~~~d~fPVDt~v~R  282 (311)
                      +|+++|+|+||+||+++|+.+.+    |.++++.|.++++++++++|++|||||||||+||++|++|++|+||||+||+|
T Consensus       171 ~L~~~g~g~Ra~~I~~~A~~i~~----g~~~l~~l~~~~~~~~~~~L~~lpGIG~~TA~~ill~~lg~pd~fpvD~~v~r  246 (290)
T 3i0w_A          171 DFEECTAGFRAKYLKDTVDRIYN----GELNLEYIKSLNDNECHEELKKFMGVGPQVADCIMLFSMQKYSAFPVDTWVKK  246 (290)
T ss_dssp             HHHHTTCGGGHHHHHHHHHHHHT----TSSCHHHHHHSCHHHHHHHHTTSTTCCHHHHHHHHHHHHCCTTCCCCCHHHHH
T ss_pred             HHHHcCCchHHHHHHHHHHHHHh----CCCCHHHHhcCCHHHHHHHHHhCCCcCHHHHHHHHHHhCCCCCcceecHHHHH
Confidence            99999999999999999999998    67789999999999999999999999999999999999999999999999999


Q ss_pred             HHHHcCCCcccCCCCCHHHHHHHH-HHhh
Q 021493          283 IATRYLLPELAGVRLTPKLCSRVA-EAFC  310 (311)
Q Consensus       283 i~~r~~~~~~~~~~~t~k~y~~i~-~~~~  310 (311)
                      ++.++|+.+    ..++++..++. +.|+
T Consensus       247 ~~~rl~~~~----~~~~~~i~~~~~~~~~  271 (290)
T 3i0w_A          247 AMMSLYVAP----DVSLKKIRDFGREKFG  271 (290)
T ss_dssp             HHHHHTSCT----TCCHHHHHHHHHHHHG
T ss_pred             HHHHhcCCC----CCCHHHHHHHHHhhcc
Confidence            999998643    35677777776 6664
>2xhi_A N-glycosylase/DNA lyase; lyase-DNA complex, lyase/DNA complex, separation-OF-function helix-hairpin-helix, DNA repair; HET: 8OG; 1.55A {Homo sapiens} PDB: 1ko9_A 1lwy_A* 1hu0_A* 1lwv_A* 1lww_A* 2noe_A* 2noh_A* 2nol_A* 1n3c_A* 1fn7_A* 2noz_A* 1yqk_A 1yqr_A* 1yql_A* 1yqm_A* 2noi_A 1ebm_A* 1m3q_A* 1m3h_A* 1n39_A* ... Back     alignment and structure
>2jhn_A ALKA, 3-methyladenine DNA-glycosylase; DNA repair, N1-methyladenine, N3-methylcytosine, hyperthermophiles, hydrolase; HET: MBO MES; 1.8A {Archaeoglobus fulgidus} PDB: 2jhj_A Back     alignment and structure
>4b21_A Probable DNA-3-methyladenine glycosylase 2; hydrolase-DNA complex, helix-hairpin-helix; HET: BGC 3DR; 1.45A {Schizosaccharomyces pombe} PDB: 4b22_A* 4b23_A* 4b24_A* Back     alignment and structure
>1mpg_A ALKA, 3-methyladenine DNA glycosylase II; DNA repair, base excision, methylation, ALK hydrolase; 1.80A {Escherichia coli} SCOP: a.96.1.3 d.129.1.2 PDB: 1diz_A 1pvs_A* 3cvs_A* 3cvt_A* 3cw7_A* 3cwa_A* 3cws_A* 3cwt_A* 3cwu_A* 3d4v_A* 3ogd_A* 3oh9_A* 3oh6_A* Back     alignment and structure
>3s6i_A DNA-3-methyladenine glycosylase 1; DNA glycosylase, DNA repair, helix-hairpin-helix (HHH), ABAS tetrahydrofuran (THF); HET: 3DR; 2.28A {Schizosaccharomyces pombe} Back     alignment and structure
>2yg9_A DNA-3-methyladenine glycosidase II, putative; hydrolase, DNA repair; 1.95A {Deinococcus radiodurans} PDB: 2yg8_A Back     alignment and structure
>2h56_A DNA-3-methyladenine glycosidase; 10174367, EC 3.2.2.-, struc genomics, PSI-2, protein structure initiative, joint center structural genomics; 2.55A {Bacillus halodurans} Back     alignment and structure
>2abk_A Endonuclease III; DNA-repair, DNA glycosylase; 1.85A {Escherichia coli} SCOP: a.96.1.1 Back     alignment and structure
>1orn_A Endonuclease III; DNA repair, DNA glycosylase, [4Fe-4S] cluster, iron-sulfur cluster, hydrolase/DNA complex; HET: PED; 1.70A {Geobacillus stearothermophilus} SCOP: a.96.1.1 PDB: 1orp_A* 1p59_A* Back     alignment and structure
>1kea_A Possible G-T mismatches repair enzyme; DNA repair, DNA glycosylase, DNA mismatch, methylation; 2.00A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.96.1.2 Back     alignment and structure
>1pu6_A 3-methyladenine DNA glycosylase; helix-hairpin-helix, base excision repair, hydrolase; HET: KCX; 1.64A {Helicobacter pylori} SCOP: a.96.1.5 PDB: 1pu7_A* 1pu8_A* Back     alignment and structure
>1kg2_A A/G-specific adenine glycosylase; DNA repair, hydrolase; 1.20A {Escherichia coli} SCOP: a.96.1.2 PDB: 1kg3_A 1muy_A 1kg6_A 1kg5_A 1mun_A 1mud_A 1kg4_A 1weg_A 1wei_A* 1wef_A* 1kg7_A 1kqj_A Back     alignment and structure
>3fhg_A Mjogg, N-glycosylase/DNA lyase, DNA-(apurinic; helix-hairpin-helix, 8-oxoguanine, 8-OXOG, DNA damage, DNA repair, glycosidase, hydrolase; 1.90A {Sulfolobus solfataricus} Back     alignment and structure
>3n0u_A Probable N-glycosylase/DNA lyase; structural genomics, ISFI, DNA repair, 8-oxoguanine, base EX repair, PSI-2, protein structure initiative; 1.50A {Thermotoga maritima} Back     alignment and structure
>3n5n_X A/G-specific adenine DNA glycosylase; alpha-helices, helix-hairpin-helix motif, iron-sulfur cluste hydrolase; 2.30A {Homo sapiens} Back     alignment and structure
>3fsp_A A/G-specific adenine glycosylase; protein-DNA complex, DNA glycosylase, transition state analog, DNA repair; HET: NRI; 2.20A {Geobacillus stearothermophilus} PDB: 3fsq_A* 1rrs_A* 1vrl_A* 1rrq_A* 3g0q_A* Back     alignment and structure
>3fhf_A Mjogg, N-glycosylase/DNA lyase, DNA-(apurinic; helix-hairpin-helix, 8-oxoguanine, 8-OXOG, DNA damage, DNA repair, glycosidase; 2.00A {Methanocaldococcus jannaschii} PDB: 3knt_A* Back     alignment and structure
>4e9f_A Methyl-CPG-binding domain protein 4; HHH DNA glycosylase family, hydrolase-DNA complex; HET: DNA 3DR; 1.79A {Homo sapiens} PDB: 4e9e_A* 4e9g_A* 4e9h_A* 4ea5_A* 4dk9_A* 1ngn_A 4ea4_A* 4ew4_A* 4evv_A* 4ew0_A* 3iho_A Back     alignment and structure
>4glx_A DNA ligase; inhibitor, ligase-ligase inhibitor-DNA complex; HET: DNA 0XS; 1.90A {Escherichia coli} Back     alignment and structure
>3vdp_A Recombination protein RECR; zinc finger, DNA repair, DNA binding; 2.45A {Thermoanaerobacter tengcongensis} PDB: 3vdu_A 3ve5_D Back     alignment and structure
>1vdd_A Recombination protein RECR; helix-hairpin-helix, zinc finger, toprim, walker B ATP binding motif; 2.50A {Deinococcus radiodurans} SCOP: e.49.1.1 PDB: 2v1c_A Back     alignment and structure
>2fmp_A DNA polymerase beta; nucleotidyl transferase, transferase/DNA complex; HET: DNA DOC DCT; 1.65A {Homo sapiens} SCOP: a.60.6.1 a.60.12.1 d.218.1.2 PDB: 1bpx_A* 1bpz_A* 1mq2_A* 1mq3_A* 1bpy_A* 1tva_A* 1zjm_A* 1zjn_A* 1zqa_A* 1zqb_A* 1zqc_A* 1zqd_A* 1zqe_A* 1zqf_A* 1zqg_A* 1zqh_A* 1zqi_A* 1zqj_A* 1zqk_A* 1zql_A* ... Back     alignment and structure
>2ihm_A POL MU, DNA polymerase MU; helix-turn-helix, transferase/DNA complex; HET: DNA D3T; 2.40A {Mus musculus} Back     alignment and structure
>1x2i_A HEF helicase/nuclease; alpha helix, helix-hairpin-helix DNA binding domain, homodimer, hydrolase; 1.45A {Pyrococcus furiosus} SCOP: a.60.2.5 Back     alignment and structure
>4gfj_A Topoisomerase V; helix-hairpin-helix, DNA repair enzyme, DNA B isomerase; 2.91A {Methanopyrus kandleri AV19} Back     alignment and structure
>2owo_A DNA ligase; protein-DNA complex, ligase-DNA complex; HET: DNA OMC AMP; 2.30A {Escherichia coli} Back     alignment and structure
>2a1j_B DNA excision repair protein ERCC-1; XPF, xeroderma pigmentosum, DNA repair, endonuclease, helix-hairpin-helix, DNA binding protein; HET: DNA; 2.70A {Homo sapiens} SCOP: a.60.2.5 Back     alignment and structure
>2duy_A Competence protein comea-related protein; helix-hairpin-helix, structural genomics, NPPSFA; 1.75A {Thermus thermophilus} SCOP: a.60.2.7 Back     alignment and structure
>1z00_A DNA excision repair protein ERCC-1; helix-hairpin-helix, hydrolase; HET: DNA; NMR {Homo sapiens} SCOP: a.60.2.5 Back     alignment and structure
>1kft_A UVRC, excinuclease ABC subunit C; helix-hairpin-helix, HHH domain, DNA-binding domain, DNA binding protein; NMR {Escherichia coli} SCOP: a.60.2.3 Back     alignment and structure
>2ztd_A Holliday junction ATP-dependent DNA helicase RUVA; recombination, branch migration, DNA BIND oligomerization, acidic PIN; 2.40A {Mycobacterium tuberculosis} PDB: 2ztc_A 2zte_A 2h5x_A 1bvs_A Back     alignment and structure
>2edu_A Kinesin-like protein KIF22; kinesin-like DNA binding domain, helix turn helix motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.60.2.7 Back     alignment and structure
>1jms_A Terminal deoxynucleotidyltransferase; polymerase; 2.36A {Mus musculus} SCOP: a.60.6.1 a.60.12.1 d.218.1.2 PDB: 1kdh_A* 1kej_A* Back     alignment and structure
>2bcq_A DNA polymerase lambda; misalignment, extrahelical, mutagenesis, mutation, deletion, streisinger, slippage, transferase, lyase/DNA complex; HET: DNA; 1.65A {Homo sapiens} SCOP: a.60.6.1 a.60.12.1 d.218.1.2 PDB: 1xsl_A* 2bcr_A* 2bcs_A* 2bcu_A* 2bcv_A* 2gws_A* 3c5g_A* 3c5f_A* 2pfn_A* 1xsp_A* 1xsn_A* 2pfo_A* 2pfp_A* 2pfq_A* 3hw8_A* 3hwt_A* 1rzt_A* 3hx0_A* 3mdc_A* 3mda_A* ... Back     alignment and structure
>1dgs_A DNA ligase; AMP complex, NAD+-dependent; HET: DNA AMP; 2.90A {Thermus filiformis} SCOP: a.60.2.2 b.40.4.6 d.142.2.2 PDB: 1v9p_A* Back     alignment and structure
>3arc_U Photosystem II 12 kDa extrinsic protein; PSII, membrane-protein complex, transmembrane alpha-helix, E transport, photosynthesis; HET: OEX CLA PHO BCR PL9 SQD LMG UNL LMT HTG DGD LHG HEM; 1.90A {Thermosynechococcus vulcanus} PDB: 3bz1_U* 2axt_U* 3bz2_U* 3kzi_U* 3prq_U* 3prr_U* 3a0b_U* 3a0h_U* Back     alignment and structure
>2duy_A Competence protein comea-related protein; helix-hairpin-helix, structural genomics, NPPSFA; 1.75A {Thermus thermophilus} SCOP: a.60.2.7 Back     alignment and structure
>2ztd_A Holliday junction ATP-dependent DNA helicase RUVA; recombination, branch migration, DNA BIND oligomerization, acidic PIN; 2.40A {Mycobacterium tuberculosis} PDB: 2ztc_A 2zte_A 2h5x_A 1bvs_A Back     alignment and structure
>1z00_B DNA repair endonuclease XPF; helix-hairpin-helix, hydrolase; HET: DNA; NMR {Homo sapiens} SCOP: a.60.2.5 PDB: 2aq0_A* Back     alignment and structure
>3b0x_A DNA polymerase beta family (X family); structural genomics, riken structural genomics/proteomics in RSGI, polxc, PHP, DRP lyase; HET: DNA DGT; 1.36A {Thermus thermophilus} PDB: 3au2_A* 3au6_A* 3auo_A* 3b0y_A* Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 311
d2noha1190 a.96.1.3 (A:136-325) 8-oxoguanine glycosylase {Hum 3e-33
d2noha2124 d.129.1.2 (A:12-135) 8-oxoguanine glycosylase {Hum 2e-31
d1mpga1183 a.96.1.3 (A:100-282) 3-Methyladenine DNA glycosyla 4e-15
d1vdda_ 199 e.49.1.1 (A:) Recombination protein RecR {Deinococ 0.002
>d2noha1 a.96.1.3 (A:136-325) 8-oxoguanine glycosylase {Human (Homo sapiens) [TaxId: 9606]} Length = 190 Back     information, alignment and structure

class: All alpha proteins
fold: DNA-glycosylase
superfamily: DNA-glycosylase
family: DNA repair glycosylase, 2 C-terminal domains
domain: 8-oxoguanine glycosylase
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  119 bits (298), Expect = 3e-33
 Identities = 70/171 (40%), Positives = 94/171 (54%), Gaps = 6/171 (3%)

Query: 146 DPVECLLQFLCSSNNNIARITKMVDFLAS-LGSHLGNVEGFEFHEFPSLERLSLVS-EVE 203
           DP+ECL  F+CSSNNNIARIT MV+ L    G  L  ++   +H FPSL+ L+    E  
Sbjct: 1   DPIECLFSFICSSNNNIARITGMVERLCQAFGPRLIQLDDVTYHGFPSLQALAGPEVEAH 60

Query: 204 LRNAGFGYRAKYITGTVDVLQSKHSGGAEWLLSLRKLDLQEAIDALCTLPGVGPKVAACI 263
           LR  G GYRA+Y++ +   +  +  G   WL  LR+   +EA  ALC LPGVG +VA CI
Sbjct: 61  LRKLGLGYRARYVSASARAILEEQGGL-AWLQQLRESSYEEAHKALCILPGVGTQVADCI 119

Query: 264 ALFSLDQHHAIPVDTHVWKIATRYLL---PELAGVRLTPKLCSRVAEAFCE 311
            L +LD+  A+PVD H+W IA R              +P+    +   F  
Sbjct: 120 CLMALDKPQAVPVDVHMWHIAQRDYSWHPTTSQAKGPSPQTNKELGNFFRS 170
>d2noha2 d.129.1.2 (A:12-135) 8-oxoguanine glycosylase {Human (Homo sapiens) [TaxId: 9606]} Length = 124 Back     information, alignment and structure
>d1mpga1 a.96.1.3 (A:100-282) 3-Methyladenine DNA glycosylase II (gene alkA or aidA) {Escherichia coli [TaxId: 562]} Length = 183 Back     information, alignment and structure
>d1vdda_ e.49.1.1 (A:) Recombination protein RecR {Deinococcus radiodurans [TaxId: 1299]} Length = 199 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query311
d2noha1190 8-oxoguanine glycosylase {Human (Homo sapiens) [Ta 100.0
d1mpga1183 3-Methyladenine DNA glycosylase II (gene alkA or a 100.0
d1pu6a_217 3-Methyladenine DNA glycosylase III (MagIII) {Heli 99.96
d2noha2124 8-oxoguanine glycosylase {Human (Homo sapiens) [Ta 99.94
d1keaa_217 Thymine-DNA glycosylase {Archaeon Methanobacterium 99.93
d2abka_211 Endonuclease III {Escherichia coli [TaxId: 562]} 99.93
d1orna_214 Endonuclease III {Escherichia coli [TaxId: 562]} 99.93
d1kg2a_224 Catalytic domain of MutY {Escherichia coli [TaxId: 99.92
d1rrqa1221 Catalytic domain of MutY {Bacillus stearothermophi 99.92
d1ngna_144 Mismatch-specific thymine glycosylase domain of th 99.87
d1bvsa271 DNA helicase RuvA subunit, middle domain {Mycobact 95.47
d1cuka278 DNA helicase RuvA subunit, middle domain {Escheric 95.21
d1ixra173 DNA helicase RuvA subunit, middle domain {Thermus 94.96
d1mpga299 3-Methyladenine DNA glycosylase II (gene alkA or a 93.96
d1dgsa1181 NAD+-dependent DNA ligase, domain 3 {Thermus filif 93.77
d1kfta_56 Excinuclease UvrC C-terminal domain {Escherichia c 93.04
d1x2ia168 ATP-dependent RNA helicase PF2015 {Pyrococcus furi 92.83
d1vdda_ 199 Recombination protein RecR {Deinococcus radioduran 91.22
d2bgwa170 DNA repair endonuclease XPF {Aeropyrum pernix [Tax 91.19
d1bvsa271 DNA helicase RuvA subunit, middle domain {Mycobact 90.79
d2i1qa160 DNA repair protein Rad51, N-terminal domain {Archa 90.14
d1cuka278 DNA helicase RuvA subunit, middle domain {Escheric 89.81
d1ixra173 DNA helicase RuvA subunit, middle domain {Thermus 89.79
d2bcqa176 DNA polymerase lambda {Human (Homo sapiens) [TaxId 89.6
d2edua191 KIF22, C-terminal domain {Human (Homo sapiens) [Ta 89.24
d2a1jb178 DNA excision repair protein ERCC-1 {Human (Homo sa 89.1
d1jmsa360 Terminal deoxynucleotidyl transferase {Mouse (Mus 87.59
d2fmpa257 DNA polymerase beta {Human (Homo sapiens) [TaxId: 87.44
d2fmpa182 DNA polymerase beta, N-terminal (8 kD)-domain {Hum 87.18
d2a1ja162 DNA repair endonuclease XPF {Human (Homo sapiens) 86.87
d1doqa_69 C-terminal domain of RNA polymerase alpha subunit 86.73
d2bcqa257 DNA polymerase lambda {Human (Homo sapiens) [TaxId 85.99
d1pzna161 DNA repair protein Rad51, N-terminal domain {Archa 85.85
d2a1jb178 DNA excision repair protein ERCC-1 {Human (Homo sa 85.76
d1nkua_187 3-Methyladenine DNA glycosylase I (Tag) {Escherich 85.47
d1jmsa195 Terminal deoxynucleotidyl transferase {Mouse (Mus 85.0
d1pzna161 DNA repair protein Rad51, N-terminal domain {Archa 84.48
d1szpa164 DNA repair protein Rad51, N-terminal domain {Baker 84.12
d2i1qa160 DNA repair protein Rad51, N-terminal domain {Archa 82.62
d3bzka190 Transcriptional accessory factor Tex {Pseudomonas 82.32
d2axtu198 Photosystem II 12 kDa extrinsic protein PsbU {Ther 80.19
d2duya165 Uncharacterized protein TTHA1967 {Thermus thermoph 80.05
>d2noha1 a.96.1.3 (A:136-325) 8-oxoguanine glycosylase {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
class: All alpha proteins
fold: DNA-glycosylase
superfamily: DNA-glycosylase
family: DNA repair glycosylase, 2 C-terminal domains
domain: 8-oxoguanine glycosylase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.9e-39  Score=283.88  Aligned_cols=164  Identities=42%  Similarity=0.770  Sum_probs=148.6

Q ss_pred             CHHHHHHHHHHhccccHHHHHHHHHHHH-hhCCCCccccccccccCCCHHHHhcCCHHH-HHHcCCchHHHHHHHHHHHH
Q 021493          146 DPVECLLQFLCSSNNNIARITKMVDFLA-SLGSHLGNVEGFEFHEFPSLERLSLVSEVE-LRNAGFGYRAKYITGTVDVL  223 (311)
Q Consensus       146 dpfe~Li~~IlsQq~~i~~a~~~~~~L~-~~G~~~~~~~~~~~~~FPtpe~La~~~~e~-Lr~~Glg~RA~~I~~~A~~i  223 (311)
                      ||||+||++|||||+|+++|.+++++|+ +||+++...++..++.||||++|+++++++ ++.+|+++||+||+++|+.+
T Consensus         1 DPfe~lv~~IisQq~s~~~~~~~~~~L~~~~G~~~~~~~~~~~~~FP~~~~la~~~~e~~l~~~~~~~ra~~i~~~a~~i   80 (190)
T d2noha1           1 DPIECLFSFICSSNNNIARITGMVERLCQAFGPRLIQLDDVTYHGFPSLQALAGPEVEAHLRKLGLGYRARYVSASARAI   80 (190)
T ss_dssp             CHHHHHHHHHTTTTSCHHHHHHHHHHHHHHHSCEEEEETTEEEECCCCHHHHHSTTHHHHHHHTTCTTHHHHHHHHHHHH
T ss_pred             ChHHHHHHHHHHcccCHHHHHHHHHHHHHHHCCCccccCcchhhccCCHHHHHHcchHHHHHhcchHHHHHHHHHHHHHH
Confidence            8999999999999999999999999999 899998888888999999999999999766 57788899999999999999


Q ss_pred             HHhcCCCccchhhhhCCCHHHHHHHhhcCCccchHHHHHHHHHhcCCCCccccchHHHHHHHHcCCCc---ccCCCCCHH
Q 021493          224 QSKHSGGAEWLLSLRKLDLQEAIDALCTLPGVGPKVAACIALFSLDQHHAIPVDTHVWKIATRYLLPE---LAGVRLTPK  300 (311)
Q Consensus       224 ~~~~~gg~~~l~~L~~~~~~e~~~~L~~l~GIG~ktAd~vlLf~l~~~d~fPVDt~v~Ri~~r~~~~~---~~~~~~t~k  300 (311)
                      .++++ +..+++.+.++++++++++|++|||||||||+||++|+++++|+||||+||+|++.|+|...   ...+..+++
T Consensus        81 ~~~~~-~~~~l~~l~~~~~~~~~~~L~~l~GIG~wTA~~il~~~~~~~d~fpvD~~v~R~~~r~~~~~~~~~~~k~~~~~  159 (190)
T d2noha1          81 LEEQG-GLAWLQQLRESSYEEAHKALCILPGVGTQVADCICLMALDKPQAVPVDVHMWHIAQRDYSWHPTTSQAKGPSPQ  159 (190)
T ss_dssp             HHTSC-SHHHHHHTTTSCHHHHHHHHTTSTTCCHHHHHHHHHHHSCCTTCCCCCHHHHHHHHHHHCCCCSSSSCSSSCHH
T ss_pred             HHhcc-cccCHHHhcCCCcHHHHHHHHHcCCchHHHHHHHHHHHcCCCCeEeecHHHHHHHHHHhcccCcchhhccccHH
Confidence            98654 56789999999999999999999999999999999999999999999999999999986422   335778999


Q ss_pred             HHHHHHHHhh
Q 021493          301 LCSRVAEAFC  310 (311)
Q Consensus       301 ~y~~i~~~~~  310 (311)
                      .|.++.+.++
T Consensus       160 ~~~~~~~~~~  169 (190)
T d2noha1         160 TNKELGNFFR  169 (190)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHH
Confidence            9999987654
>d1mpga1 a.96.1.3 (A:100-282) 3-Methyladenine DNA glycosylase II (gene alkA or aidA) {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1pu6a_ a.96.1.5 (A:) 3-Methyladenine DNA glycosylase III (MagIII) {Helicobacter pylori [TaxId: 210]} Back     information, alignment and structure
>d2noha2 d.129.1.2 (A:12-135) 8-oxoguanine glycosylase {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1keaa_ a.96.1.2 (A:) Thymine-DNA glycosylase {Archaeon Methanobacterium thermoformicicum [TaxId: 145262]} Back     information, alignment and structure
>d2abka_ a.96.1.1 (A:) Endonuclease III {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1orna_ a.96.1.1 (A:) Endonuclease III {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1kg2a_ a.96.1.2 (A:) Catalytic domain of MutY {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1rrqa1 a.96.1.2 (A:9-229) Catalytic domain of MutY {Bacillus stearothermophilus [TaxId: 1422]} Back     information, alignment and structure
>d1ngna_ a.96.1.2 (A:) Mismatch-specific thymine glycosylase domain of the methyl-GpG binding protein mbd4 {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1bvsa2 a.60.2.1 (A:64-134) DNA helicase RuvA subunit, middle domain {Mycobacterium leprae [TaxId: 1769]} Back     information, alignment and structure
>d1cuka2 a.60.2.1 (A:65-142) DNA helicase RuvA subunit, middle domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1ixra1 a.60.2.1 (A:63-135) DNA helicase RuvA subunit, middle domain {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1mpga2 d.129.1.2 (A:1-99) 3-Methyladenine DNA glycosylase II (gene alkA or aidA) {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1dgsa1 a.60.2.2 (A:401-581) NAD+-dependent DNA ligase, domain 3 {Thermus filiformis [TaxId: 276]} Back     information, alignment and structure
>d1kfta_ a.60.2.3 (A:) Excinuclease UvrC C-terminal domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1x2ia1 a.60.2.5 (A:2-69) ATP-dependent RNA helicase PF2015 {Pyrococcus furiosus [TaxId: 2261]} Back     information, alignment and structure
>d1vdda_ e.49.1.1 (A:) Recombination protein RecR {Deinococcus radiodurans [TaxId: 1299]} Back     information, alignment and structure
>d2bgwa1 a.60.2.5 (A:160-229) DNA repair endonuclease XPF {Aeropyrum pernix [TaxId: 56636]} Back     information, alignment and structure
>d1bvsa2 a.60.2.1 (A:64-134) DNA helicase RuvA subunit, middle domain {Mycobacterium leprae [TaxId: 1769]} Back     information, alignment and structure
>d2i1qa1 a.60.4.1 (A:5-64) DNA repair protein Rad51, N-terminal domain {Archaeon Methanococcus voltae [TaxId: 2188]} Back     information, alignment and structure
>d1cuka2 a.60.2.1 (A:65-142) DNA helicase RuvA subunit, middle domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1ixra1 a.60.2.1 (A:63-135) DNA helicase RuvA subunit, middle domain {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d2bcqa1 a.60.6.1 (A:252-327) DNA polymerase lambda {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2edua1 a.60.2.7 (A:8-98) KIF22, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2a1jb1 a.60.2.5 (B:219-296) DNA excision repair protein ERCC-1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1jmsa3 a.60.12.1 (A:243-302) Terminal deoxynucleotidyl transferase {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d2fmpa2 a.60.12.1 (A:92-148) DNA polymerase beta {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2fmpa1 a.60.6.1 (A:10-91) DNA polymerase beta, N-terminal (8 kD)-domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2a1ja1 a.60.2.5 (A:837-898) DNA repair endonuclease XPF {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1doqa_ a.60.3.1 (A:) C-terminal domain of RNA polymerase alpha subunit {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d2bcqa2 a.60.12.1 (A:329-385) DNA polymerase lambda {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1pzna1 a.60.4.1 (A:35-95) DNA repair protein Rad51, N-terminal domain {Archaeon Pyrococcus furiosus [TaxId: 2261]} Back     information, alignment and structure
>d2a1jb1 a.60.2.5 (B:219-296) DNA excision repair protein ERCC-1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1nkua_ a.96.1.4 (A:) 3-Methyladenine DNA glycosylase I (Tag) {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1jmsa1 a.60.6.1 (A:148-242) Terminal deoxynucleotidyl transferase {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1pzna1 a.60.4.1 (A:35-95) DNA repair protein Rad51, N-terminal domain {Archaeon Pyrococcus furiosus [TaxId: 2261]} Back     information, alignment and structure
>d1szpa1 a.60.4.1 (A:81-144) DNA repair protein Rad51, N-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d2i1qa1 a.60.4.1 (A:5-64) DNA repair protein Rad51, N-terminal domain {Archaeon Methanococcus voltae [TaxId: 2188]} Back     information, alignment and structure
>d3bzka1 a.60.2.6 (A:474-563) Transcriptional accessory factor Tex {Pseudomonas aeruginosa [TaxId: 287]} Back     information, alignment and structure
>d2axtu1 a.60.12.2 (U:37-134) Photosystem II 12 kDa extrinsic protein PsbU {Thermosynechococcus elongatus [TaxId: 146786]} Back     information, alignment and structure
>d2duya1 a.60.2.7 (A:11-75) Uncharacterized protein TTHA1967 {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure