Citrus Sinensis ID: 021499
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
Close Homologs for Annotation Transfer
Close Homologs in the Non-Redundant Database Detected by BLAST 
Original result of BLAST against Nonredundant Database
GI ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 311 | ||||||
| 225454081 | 277 | PREDICTED: uncharacterized protein LOC10 | 0.887 | 0.996 | 0.657 | 6e-99 | |
| 255541502 | 282 | conserved hypothetical protein [Ricinus | 0.900 | 0.992 | 0.658 | 3e-98 | |
| 388494350 | 276 | unknown [Lotus japonicus] | 0.858 | 0.967 | 0.672 | 3e-97 | |
| 356530098 | 276 | PREDICTED: uncharacterized protein LOC10 | 0.858 | 0.967 | 0.650 | 8e-93 | |
| 449454476 | 286 | PREDICTED: uncharacterized protein LOC10 | 0.836 | 0.909 | 0.646 | 2e-91 | |
| 356568344 | 276 | PREDICTED: uncharacterized protein LOC10 | 0.858 | 0.967 | 0.64 | 3e-91 | |
| 147854599 | 239 | hypothetical protein VITISV_018377 [Viti | 0.755 | 0.983 | 0.698 | 4e-89 | |
| 224063993 | 284 | predicted protein [Populus trichocarpa] | 0.819 | 0.897 | 0.633 | 8e-88 | |
| 224127566 | 271 | predicted protein [Populus trichocarpa] | 0.819 | 0.940 | 0.642 | 1e-86 | |
| 357507177 | 273 | hypothetical protein MTR_7g076600 [Medic | 0.749 | 0.853 | 0.586 | 2e-77 |
| >gi|225454081|ref|XP_002271354.1| PREDICTED: uncharacterized protein LOC100248297 [Vitis vinifera] gi|297745206|emb|CBI40286.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
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Score = 366 bits (940), Expect = 6e-99, Method: Compositional matrix adjust.
Identities = 186/283 (65%), Positives = 220/283 (77%), Gaps = 7/283 (2%)
Query: 3 MGHADGLSELRSSKDHLLSDHELEVEEYTDDDDEEAANSSEEILYAASFEELASNSVKYD 62
M +GL L SSKD LLSD E EV D++E A++SE+ILY ASF+ELA N+++YD
Sbjct: 1 MSRTEGLPGLGSSKDPLLSDPESEV------DEDEEADTSEQILYTASFDELAENNLQYD 54
Query: 63 TIIWFSISLLLVLAWGVGVFMLLYLPIRRYVLKKDISSRKLYVTPSEIVYKVSRPSFIPF 122
TIIW SISLLLVLAWGVG+ MLLYLP +RYVL+KDISSRKL+VTP++IVYKVSRPS+IPF
Sbjct: 55 TIIWMSISLLLVLAWGVGIIMLLYLPFKRYVLQKDISSRKLHVTPTQIVYKVSRPSYIPF 114
Query: 123 WGKTTNERHVPLSLVIDVIIEQGCLQSIYGIHTFRVESIARGKAAPVDELQVQGVDNPVL 182
WG T E+ VPLSLVID+IIEQGCLQS+YGIHT R+ESIA GKAAPVDEL VQGV NP L
Sbjct: 115 WGDVTVEKQVPLSLVIDIIIEQGCLQSVYGIHTLRIESIAHGKAAPVDELLVQGVSNPGL 174
Query: 183 LRKVIVTEAAKVIQNSSKNWKVNAFTGEVESMSRMASLTEGTAV-LRSPSKSWKMAGLPR 241
LRKVI+TEAAKV+Q NWK A TGE ES+ RM SLTEG AV LRSPSKS K+ G PR
Sbjct: 175 LRKVIITEAAKVLQEVGTNWKPPALTGEGESVVRMTSLTEGPAVLLRSPSKSLKITGSPR 234
Query: 242 QASVEHRGMVPGELILHKLDEVNKSVKVCIILIKLFSFQPTES 284
+ + ++PG+L+L+KL+EV KSVK LI+ P S
Sbjct: 235 HTPADRKSIIPGDLLLNKLEEVTKSVKKIEFLIEKSQASPESS 277
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Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255541502|ref|XP_002511815.1| conserved hypothetical protein [Ricinus communis] gi|223548995|gb|EEF50484.1| conserved hypothetical protein [Ricinus communis] | Back alignment and taxonomy information |
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| >gi|388494350|gb|AFK35241.1| unknown [Lotus japonicus] | Back alignment and taxonomy information |
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| >gi|356530098|ref|XP_003533621.1| PREDICTED: uncharacterized protein LOC100791214 [Glycine max] | Back alignment and taxonomy information |
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| >gi|449454476|ref|XP_004144980.1| PREDICTED: uncharacterized protein LOC101221776 [Cucumis sativus] gi|449507665|ref|XP_004163096.1| PREDICTED: uncharacterized protein LOC101228358 [Cucumis sativus] | Back alignment and taxonomy information |
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| >gi|356568344|ref|XP_003552371.1| PREDICTED: uncharacterized protein LOC100794759 [Glycine max] | Back alignment and taxonomy information |
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| >gi|147854599|emb|CAN80696.1| hypothetical protein VITISV_018377 [Vitis vinifera] | Back alignment and taxonomy information |
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| >gi|224063993|ref|XP_002301338.1| predicted protein [Populus trichocarpa] gi|222843064|gb|EEE80611.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
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| >gi|224127566|ref|XP_002320106.1| predicted protein [Populus trichocarpa] gi|222860879|gb|EEE98421.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
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| >gi|357507177|ref|XP_003623877.1| hypothetical protein MTR_7g076600 [Medicago truncatula] gi|355498892|gb|AES80095.1| hypothetical protein MTR_7g076600 [Medicago truncatula] | Back alignment and taxonomy information |
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Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST 
Original result of BLAST against Gene Ontology (AMIGO)
No hits with e-value below 0.001 by BLAST
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Ezypred Server 
Original result from Ezypred Server
Fail to connect to Ezypred Server
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING 
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against CDD database part I
Conserved Domains Detected by HHsearch 
Original result of HHsearch against CDD database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 311 | |||
| PF03703 | 80 | bPH_2: Bacterial PH domain; InterPro: IPR005182 A | 98.15 | |
| COG3402 | 161 | Uncharacterized conserved protein [Function unknow | 97.37 | |
| COG3428 | 494 | Predicted membrane protein [Function unknown] | 93.5 | |
| COG3428 | 494 | Predicted membrane protein [Function unknown] | 93.47 |
| >PF03703 bPH_2: Bacterial PH domain; InterPro: IPR005182 A domain that is found in uncharacterised family of membrane proteins | Back alignment and domain information |
|---|
Probab=98.15 E-value=1.2e-06 Score=63.29 Aligned_cols=75 Identities=16% Similarity=0.333 Sum_probs=59.2
Q ss_pred cceeEeecCceEEEecCCcccccccc-ccccceecCchhhhhhhhhchhhheeceeEEEEeeeecCCCCCCCceeEeeec
Q 021499 100 SRKLYVTPSEIVYKVSRPSFIPFWGK-TTNERHVPLSLVIDVIIEQGCLQSIYGIHTFRVESIARGKAAPVDELQVQGVD 178 (311)
Q Consensus 100 SrkLyvT~~~IVYKVsRPs~~P~~Gv-~r~Ek~VpL~~V~DiiieQG~LqslfGihslriEsig~~k~~p~D~lqi~GV~ 178 (311)
+.+..+|++.++.+ .|+ .+++..+|++.|.+|-++||++|+.||+.++.+++++.++..+ .+-..++.
T Consensus 3 ~~~y~i~~~~l~i~---------~G~~~~~~~~i~~~~Iq~v~~~q~~~~r~~g~~~i~i~~~~~~~~~~--~i~~~~~~ 71 (80)
T PF03703_consen 3 NTGYTITDDRLIIR---------SGLFSKRTTIIPLDRIQSVSIKQNPLQRLFGLGTIKIDTAGGSGEKI--EIPFLSIE 71 (80)
T ss_pred EEEEEEECCEEEEE---------ECeEEEEEEEEEhhHeEEEEEEcCHHHHhCccEEEEEEECCCCCcee--EEecCCHH
Confidence 44577888887733 255 7899999999999999999999999999999999999998642 35555555
Q ss_pred ChhhHHH
Q 021499 179 NPVLLRK 185 (311)
Q Consensus 179 np~~fRk 185 (311)
+|..+++
T Consensus 72 ~a~~i~~ 78 (80)
T PF03703_consen 72 DAEEIYD 78 (80)
T ss_pred HHHHHHh
Confidence 6665554
|
1-3 copies found in each protein, with each copy flanked by transmembrane helices. |
| >COG3402 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
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| >COG3428 Predicted membrane protein [Function unknown] | Back alignment and domain information |
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| >COG3428 Predicted membrane protein [Function unknown] | Back alignment and domain information |
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Homologous Structure Templates
Structure Templates Detected by BLAST 
Original result of BLAST against Protein Data Bank
No homologous structure with e-value below 0.005
Structure Templates Detected by RPS-BLAST 
Original result of RPS-BLAST against PDB70 database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| Query | 311 | |||
| 1vt4_I | 1221 | APAF-1 related killer DARK; drosophila apoptosome, | 2e-07 |
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
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Score = 51.4 bits (122), Expect = 2e-07
Identities = 61/426 (14%), Positives = 124/426 (29%), Gaps = 154/426 (36%)
Query: 5 HAD-GLSELRSSKDHLLSDHELEVEEYTDD-DDEEAANSSEEILYAASFEEL---ASNSV 59
H D E + +LS E + + D+ D ++ + + IL + +
Sbjct: 6 HMDFETGEHQYQYKDILSVFE---DAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVS 62
Query: 60 KYDTIIWFSISLLLVLAWGVGVFM---------LLYLPIR-----------RYVLKKDIS 99
+ W +LL V F+ L PI+ Y+ ++D
Sbjct: 63 GTLRLFW---TLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRD-- 117
Query: 100 SRKLYVTPSEIV-YKVSRPSFIPFW-----------------------GKTTNERHVPLS 135
+LY Y VSR P+ GKT
Sbjct: 118 --RLYNDNQVFAKYNVSRLQ--PYLKLRQALLELRPAKNVLIDGVLGSGKTW-------- 165
Query: 136 LVIDV---------------------------IIEQGCLQSIYGIHTFRVESIARGKAAP 168
+ +DV ++E LQ + + +R +
Sbjct: 166 VALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEM--LQKLL--YQIDPNWTSRSDHSS 221
Query: 169 VDELQVQGVDNPVLLRKVIVTEAAK----VIQNSSKNWKVNAFTGEVESM--SRMASLTE 222
+L++ + LR+++ ++ + V+ N NAF + + +R +T+
Sbjct: 222 NIKLRIHSIQA--ELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTD 279
Query: 223 GTAVLR-------------SPSKS------W---KMAGLPRQASVEH---RGMVPGELI- 256
+ +P + + + LPR+ + ++ E I
Sbjct: 280 FLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSII-AESIR 338
Query: 257 ---------LH-KLDEVNKSVKVCIILIKLFSFQPTESFPLYIYCVSFGDSTN-PKSSIM 305
H D++ ++ L +P E ++ F S + P +
Sbjct: 339 DGLATWDNWKHVNCDKLTTIIESS-----LNVLEPAEYRKMFDRLSVFPPSAHIPTILLS 393
Query: 306 ICVVYW 311
+ W
Sbjct: 394 L---IW 396
|
Structure Templates Detected by HHsearch 
Original result of HHsearch against PDB70 database
No hit with probability above 80.00
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against SCOP70(version1.75) database
No hit with e-value below 0.005
Homologous Domains Detected by HHsearch 
Original result of HHsearch against SCOP70(version1.75) database
No hit with probability above 80.00