Citrus Sinensis ID: 021608


Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310
MTLLEVITKAVANHELPGSQLEHPIILNPDNIFLNLKPELEGASAASLVNPVSGWQISEVDTYLIDSGKKFHAKLKRKLKDTNNFDKDEFIGILNPYLQKIGEKVGISTRINRSDSGYTQGLIEKVGFLMGRDVASLVLEACISLRIWELVETLIVHGLVDHSSYSNLVTRLATEKRSDLLCLCVKYSPDLGSSELLCILKYFLCPPKDAYGSMGSVRMEWESQALLAIEKAGPCPEASFGLGLKACDWVPKLEVIVQCLGLVLDENFSSLVLLPEFQEELRSIEGVVSTLASEARYCCSLANVVKRFGS
cHHHHHHHHHHcccccccccccccEEEccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHcccccccccccccHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHcccccEEEEEEcccccccHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHcc
ccHHHHHHccccccccccccccccEEEccccccccccccccccccccccccccccEcccccHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHccccccEccccccccccHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHccccHEHHHHHHHHcccHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHcccccccccccHHHHHHHHHHHEcccccEEEEcHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHcc
MTLLEVITKAVanhelpgsqlehpiilnpdniflnlkpelegasaaslvnpvsgwqiseVDTYLIDSGKKFHAKLKRKLkdtnnfdkdefIGILNPYLQKIgekvgistrinrsdsgytqgLIEKVGFLMGRDVASLVLEACISLRIWELVETLIVHGlvdhssysnLVTRLATEKRSDLLCLCvkyspdlgsseLLCILKYflcppkdaygsmgsvrMEWESQALLAIEkagpcpeasfglglkacdwvpKLEVIVQCLGLvldenfsslvllPEFQEELRSIEGVVSTLASEARYCCSLANVVKRFGS
MTLLEVITKAVanhelpgsqlehpIILNPDNIFLNLKPELEGASAASLVNPVSGWQISEVDTYLIDSGKKFHAKLKRKlkdtnnfdkdefiGILNPYLQKIGEKVGIstrinrsdsgytQGLIEKVGFLMGRDVASLVLEACISLRIWELVETLIVHGLVDHSSYSNLVTRLATEKRSDLLCLCVKYSPDLGSSELLCILKYFLCPPKDAYGSMGSVRMEWESQALLAIEKAGPCPEASFGLGLKACDWVPKLEVIVQCLGLVLDENFSSLVLLPEFQEELRSIEGVVSTLASEARYCCSLANVVKRFGS
MTLLEVITKAVANHELPGSQLEHPIILNPDNIFLNLKPELEGASAASLVNPVSGWQISEVDTYLIDSGkkfhaklkrklkDTNNFDKDEFIGILNPYLQKIGEKVGISTRINRSDSGYTQGLIEKVGFLMGRDVASLVLEACISLRIWELVETLIVHGLVDHSSYSNLVTRLATEKRSDLLCLCVKYSPDLGSSELLCILKYFLCPPKDAYGSMGSVRMEWESQALLAIEKAGPCPEASFGLGLKACDWVPKLEVIVQCLGLVLDENFSSLVLLPEFQEELRSIEGVVSTLASEARYCCSLANVVKRFGS
****EVITKAVANHELPGSQLEHPIILNPDNIFLNLKPELEGASAASLVNPVSGWQISEVDTYLIDSGKKFHAKLKRKLKDTNNFDKDEFIGILNPYLQKIGEKVGISTRINRSDSGYTQGLIEKVGFLMGRDVASLVLEACISLRIWELVETLIVHGLVDHSSYSNLVTRLATEKRSDLLCLCVKYSPDLGSSELLCILKYFLCPPKDAYGSMGSVRMEWESQALLAIEKAGPCPEASFGLGLKACDWVPKLEVIVQCLGLVLDENFSSLVLLPEFQEELRSIEGVVSTLASEARYCCSLANVVK****
*TLLEV****************HPIILNPDN***********************WQISEVDTYLIDSGKKFHA**************DEFIGILNPYLQKIGE*************GYTQGLIEKVGFLMGRDVASLVLEACISLRIWELVETLIVHGLVDHSSYSNLVTRLATEKRSDLLCLCVKYSPDLGSSELLCILKYFLCPPKDAYGSMGSVRMEWESQALLAIEKAGP*****FGLGLKACDWVPKLEVIVQCLGLVLDENFSSLVLLPEFQEELRSIEGVVSTLASEARYCCSLANVVKRF**
MTLLEVITKAVANHELPGSQLEHPIILNPDNIFLNLKPELEGASAASLVNPVSGWQISEVDTYLIDSGKKFHAKLKRKLKDTNNFDKDEFIGILNPYLQKIGEKVGISTRINRSDSGYTQGLIEKVGFLMGRDVASLVLEACISLRIWELVETLIVHGLVDHSSYSNLVTRLATEKRSDLLCLCVKYSPDLGSSELLCILKYFLCPPKDAYGSMGSVRMEWESQALLAIEKAGPCPEASFGLGLKACDWVPKLEVIVQCLGLVLDENFSSLVLLPEFQEELRSIEGVVSTLASEARYCCSLANVVKRFGS
*T*****TK*VA*****GSQLEHPIILNPDNIFLNLKPELEGASAASLVNPVSGWQISEVDTYLIDSGKKFHAKLKRKLKDTNNFDKDEFIGILNPYLQKIGEKVGISTRINRSDSGYTQGLIEKVGFLMGRDVASLVLEACISLRIWELVETLIVHGLVDHSSYSNLVTRLATEKRSDLLCLCVKYSPDLGSSELLCILKYFLCPPKDAYGSMGSVRMEWESQALLAIEKAGPCPEASFGLGLKACDWVPKLEVIVQCLGLVLDENFSSLVLLPEFQEELRSIEGVVSTLASEARYCCSLANVVKRFG*
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MTLLEVITKAVANHELPGSQLEHPIILNPDNIFLNLKPELEGASAASLVNPVSGWQISEVDTYLIDSGKKFHAKLKRKLKDTNNFDKDEFIGILNPYLQKIGEKVGISTRINRSDSGYTQGLIEKVGFLMGRDVASLVLEACISLRIWELVETLIVHGLVDHSSYSNLVTRLATEKRSDLLCLCVKYSPDLGSSELLCILKYFLCPPKDAYGSMGSVRMEWESQALLAIEKAGPCPEASFGLGLKACDWVPKLEVIVQCLGLVLDENFSSLVLLPEFQEELRSIEGVVSTLASEARYCCSLANVVKRFGS
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST ?

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query310
255540939395 conserved hypothetical protein [Ricinus 0.738 0.579 0.662 3e-84
224124154397 predicted protein [Populus trichocarpa] 0.748 0.584 0.659 1e-80
18394662399 uncharacterized protein [Arabidopsis tha 0.745 0.578 0.601 2e-71
21617960399 unknown [Arabidopsis thaliana] 0.745 0.578 0.597 1e-70
356512445399 PREDICTED: uncharacterized protein LOC10 0.745 0.578 0.575 6e-70
255635341399 unknown [Glycine max] 0.745 0.578 0.570 5e-69
297850280399 hypothetical protein ARALYDRAFT_472110 [ 0.745 0.578 0.580 4e-68
356562814394 PREDICTED: uncharacterized protein LOC10 0.745 0.586 0.549 5e-68
449520752393 PREDICTED: uncharacterized protein LOC10 0.748 0.590 0.557 9e-67
449448372393 PREDICTED: uncharacterized protein LOC10 0.748 0.590 0.549 6e-66
>gi|255540939|ref|XP_002511534.1| conserved hypothetical protein [Ricinus communis] gi|223550649|gb|EEF52136.1| conserved hypothetical protein [Ricinus communis] Back     alignment and taxonomy information
 Score =  317 bits (813), Expect = 3e-84,   Method: Compositional matrix adjust.
 Identities = 153/231 (66%), Positives = 190/231 (82%), Gaps = 2/231 (0%)

Query: 1   MTLLEVITKAVANHELPGSQLEHPIILNPDNIFLNLKPELEGASAASLVNPVSGWQISEV 60
           M+LL+VITKA + +  P  Q E+PI+LN D++FLNLK   E  + +SL +PV+GWQ++E 
Sbjct: 1   MSLLDVITKAASVNVEP--QSEYPIVLNSDDVFLNLKANAETPNPSSLASPVTGWQLAET 58

Query: 61  DTYLIDSGKKFHAKLKRKLKDTNNFDKDEFIGILNPYLQKIGEKVGISTRINRSDSGYTQ 120
           D +LI+ GKKF+ KLKRKLKD N+F+KDEF GILNP+L+K+GEK+GIS  ++ SD+GYTQ
Sbjct: 59  DVHLIELGKKFYCKLKRKLKDINHFNKDEFFGILNPFLEKMGEKIGISVGVSSSDNGYTQ 118

Query: 121 GLIEKVGFLMGRDVASLVLEACISLRIWELVETLIVHGLVDHSSYSNLVTRLATEKRSDL 180
            LIEK+GFLMGRDV  LVLEAC+SL IW+LVETLI+ GLVD+S YSNLV  L   KRSDL
Sbjct: 119 VLIEKIGFLMGRDVTGLVLEACLSLEIWDLVETLIIKGLVDYSCYSNLVKNLVANKRSDL 178

Query: 181 LCLCVKYSPDLGSSELLCILKYFLCPPKDAYGSMGSVRMEWESQALLAIEK 231
           LCL +K++PDLG SELLCILKYFLCP K+AY +M +VR EWESQALLAIEK
Sbjct: 179 LCLSIKHAPDLGLSELLCILKYFLCPSKEAYSAMANVRKEWESQALLAIEK 229




Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224124154|ref|XP_002330118.1| predicted protein [Populus trichocarpa] gi|222871252|gb|EEF08383.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|18394662|ref|NP_564065.1| uncharacterized protein [Arabidopsis thaliana] gi|6730701|gb|AAF27096.1|AC011809_5 Unknown protein [Arabidopsis thaliana] gi|15810347|gb|AAL07061.1| unknown protein [Arabidopsis thaliana] gi|20465593|gb|AAM20279.1| unknown protein [Arabidopsis thaliana] gi|332191650|gb|AEE29771.1| uncharacterized protein [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|21617960|gb|AAM67010.1| unknown [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|356512445|ref|XP_003524929.1| PREDICTED: uncharacterized protein LOC100817544 [Glycine max] Back     alignment and taxonomy information
>gi|255635341|gb|ACU18024.1| unknown [Glycine max] Back     alignment and taxonomy information
>gi|297850280|ref|XP_002893021.1| hypothetical protein ARALYDRAFT_472110 [Arabidopsis lyrata subsp. lyrata] gi|297338863|gb|EFH69280.1| hypothetical protein ARALYDRAFT_472110 [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|356562814|ref|XP_003549663.1| PREDICTED: uncharacterized protein LOC100806052 [Glycine max] Back     alignment and taxonomy information
>gi|449520752|ref|XP_004167397.1| PREDICTED: uncharacterized protein LOC101225330 [Cucumis sativus] Back     alignment and taxonomy information
>gi|449448372|ref|XP_004141940.1| PREDICTED: uncharacterized protein LOC101222166 [Cucumis sativus] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query310
TAIR|locus:2034969399 AT1G18850 "AT1G18850" [Arabido 0.745 0.578 0.559 2.5e-83
TAIR|locus:2034969 AT1G18850 "AT1G18850" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 628 (226.1 bits), Expect = 2.5e-83, Sum P(2) = 2.5e-83
 Identities = 132/236 (55%), Positives = 163/236 (69%)

Query:     1 MTLLEVITKAVANHELPGSQLEHPIILNPDNIFLNLKPELEGASAASLVNPVSGWQISEV 60
             MTLLE I+ AVAN +   SQ ++PI L+ D IF NLKP+LE  +  +LVNP+SGW ISE 
Sbjct:     1 MTLLEAISNAVANQDKVDSQSDYPIPLSHDGIFANLKPKLENPNLGTLVNPISGWGISES 60

Query:    61 DTYLIDSGXXXXXXXXXXXXDTNNFDKDEFIGILNPYLQKIGEKVGISTRINRSDSGYTQ 120
             D  +ID G            DTN F KDEF+ +L  +L+KIGEKVGIS   +    G   
Sbjct:    61 DVEVIDLGKKFSSKLKRKLKDTNGFVKDEFVKMLKQFLEKIGEKVGISEAESEMVLGDQA 120

Query:   121 G-----LIEKVGFLMGRDVASLVLEACISLRIWELVETLIVHGLVDHSSYSNLVTRLATE 175
             G     L+EK GFLMGRDV+ LVL+ CISL +WELVE LI + LVDHSSYS LV+ L  +
Sbjct:   121 GSEIQILVEKNGFLMGRDVSGLVLKGCISLEMWELVEILISNSLVDHSSYSYLVSNLVEK 180

Query:   176 KRSDLLCLCVKYSPDLGSSELLCILKYFLCPPKDAYGSMGSVRMEWESQALLAIEK 231
             +RSDLLC+ +K + DLG++ELL ILKYFLCP K+A  +M  VR EWESQA+LAIEK
Sbjct:   181 QRSDLLCVVIKEASDLGATELLSILKYFLCPSKEAISTMAKVREEWESQAMLAIEK 236


GO:0003674 "molecular_function" evidence=ND
GO:0005634 "nucleus" evidence=ISM
GO:0008150 "biological_process" evidence=ND
GO:0005730 "nucleolus" evidence=IDA
GO:0001510 "RNA methylation" evidence=RCA
GO:0006626 "protein targeting to mitochondrion" evidence=RCA

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!


Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Your Input:
eugene3.01290009
hypothetical protein (397 aa)
(Populus trichocarpa)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Conserved Domains Detected by HHsearch ?

No hit with probability above 80.00


Homologous Structure Templates

Structure Templates Detected by BLAST ?

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

No hit with e-value below 0.005

Structure Templates Detected by HHsearch ?

No hit with probability above 80.00


Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch ?

No hit with probability above 80.00