Citrus Sinensis ID: 021613

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310
MAVATGSSSCCKLAKPCAFTTSNSSQSPFKLKKFTASPAKSTSIRCTIARDPVVPMEAKKESDPAPWQRPDVFGRFGRFGGKFVPETLMYALSELESALHKLADDRDFQEELSGILRDYVGRETPLYFAERLTEHYRRPNGGGPHIYLKREDLNHTGAHKINNAVGQALLAKRLGKTRIIAETGAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEVRAVHSGTATLKDATSEAIRDWVTNVETTHYILGSVAGPHPYPMMVRDFHATSIGEMGWETRCADCMRWWWFKCHGSLPRIC
ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHcccccccHHHHHHHHHHHccccccccEEEEEccccccccHHHHHHHHHHHHHHHHHccccEEEEccccHHHHHHHHHHHHHccccEEEccHHHHHHHHHHHHHHHHcccEEEEEccccccHHHHHHHHHHHHHHcccccEEEEEcccccccccHHHccccccccccccHHHHcccHHHHHHHHHHccccccc
cccccccccccccccccEEEcccccccccccccccccccccccEEEEEEccccccccccccccccccccccccccEccEEEEEccHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHcccccccEEEcccccHHHHcccccccEEEEEEHHHccccEccHHHHHHHHHHHHHccccEEEEEEcccHHHHHHHHHHHHHccEEEEEEEHHHHHHcHHHHHHHHHcccEEEEEccccccHHHHHHHHHHHHHHHcccEEEccccccccccHHHHHHHcHHEEEcHccHHHHHHHHHHHHHHHHHccccccc
mavatgsssccklakpcafttsnssqspfklkkftaspakstsirctiardpvvpmeakkesdpapwqrpdvfgrfgrfggkfvpETLMYALSELESALHKLADDRDFQEELSGILRDYVGRETPLYFAERLTehyrrpngggphiylkredlnhtgahkINNAVGQALLAKRLGKTRiiaetgagqhgvATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEVRAVhsgtatlkdATSEAIRDWVTNVETTHYIlgsvagphpypmmvRDFHAtsigemgweTRCADCMrwwwfkchgslpric
mavatgsssccklakpcafttsnssqspfklkkftaspakstsirctiardpvvpmeakkesdpapwqrpdVFGRFGRFGGKFVPETLMYALSELESALHKLADDRDFQEELSGILRDYVGRETPLYFAERltehyrrpngggpHIYLKREDLNHTGAHKINNAVGQALLAKRLGKTRIIAEtgagqhgvaTATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEVRAVHsgtatlkdatseaIRDWVTNVETTHYILGSVAGPHPYPMMVRDFHATSIGEMGWETRCADCMRWWWFKChgslpric
MAVATGSSSCCKLAKPCAFTTSNSSQSPFKLKKFTASPAKSTSIRCTIARDPVVPMEAKKESDPAPWQRPDVfgrfgrfggkfVPETLMYALSELESALHKLADDRDFQEELSGILRDYVGRETPLYFAERLTEHYRRPNGGGPHIYLKREDLNHTGAHKINNAVGQALLAKRLGKTRIIAETGAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEVRAVHSGTATLKDATSEAIRDWVTNVETTHYILGSVAGPHPYPMMVRDFHATSIGEMGWETRCADCMRWWWFKCHGSLPRIC
********************************************************************RPDVFGRFGRFGGKFVPETLMYALSELESALHKLADDRDFQEELSGILRDYVGRETPLYFAERLTEHYRRPNGGGPHIYLKREDLNHTGAHKINNAVGQALLAKRLGKTRIIAETGAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEVRAVHSGTATLKDATSEAIRDWVTNVETTHYILGSVAGPHPYPMMVRDFHATSIGEMGWETRCADCMRWWWFKCHGSL****
************************************************************************FGRFGRFGGKFVPETLMYALSELESALHKLADDRDFQEELSGILRDYVGRETPLYFAERLTEHYRRPNGGGPHIYLKREDLNHTGAHKINNAVGQALLAKRLGKTRIIAETGAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEVRAVHSGTATLKDATSEAIRDWVTNVETTHYILGSVAGPHPYPMMVRDFHATSIGEMGWETRCADCMRWWWFKCHGSLPRI*
**********CKLAKPCAFTTSNSSQSPFKLKK*********SIRCTIARDPVVP**********PWQRPDVFGRFGRFGGKFVPETLMYALSELESALHKLADDRDFQEELSGILRDYVGRETPLYFAERLTEHYRRPNGGGPHIYLKREDLNHTGAHKINNAVGQALLAKRLGKTRIIAETGAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEVRAVHSGTATLKDATSEAIRDWVTNVETTHYILGSVAGPHPYPMMVRDFHATSIGEMGWETRCADCMRWWWFKCHGSLPRIC
*********CCKLAKPCAFTTSN****************KSTSIRCTIARDPVVPMEAK**SDPAPWQRPDVFGRFGRFGGKFVPETLMYALSELESALHKLADDRDFQEELSGILRDYVGRETPLYFAERLTEHYRRPNGGGPHIYLKREDLNHTGAHKINNAVGQALLAKRLGKTRIIAETGAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEVRAVHSGTATLKDATSEAIRDWVTNVETTHYILGSVAGPHPYPMMVRDFHATSIGEMGWETRCADCMRWWWFKCHGSLP***
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SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MAVATGSSSCCKLAKPCAFTTSNSSQSPFKLKKFTASPAKSTSIRCTIARDPVVPMEAKKESDPAPWQRPDVFGRFGRFGGKFVPETLMYAxxxxxxxxxxxxxxxxxxxxxSGILRDYVGRETPLYFAERLTEHYRRPNGGGPHIYLKREDLNHTGAHKINNAVGQALLAKRLGKTRIIAETGAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEVRAVHSGTATLKDATSEAIRDWVTNVETTHYILGSVAGPHPYPMMVRDFHATSIGEMGWETRCADCMRWWWFKCHGSLPRIC
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query310 2.2.26 [Sep-21-2011]
P14671 470 Tryptophan synthase beta yes no 0.858 0.565 0.783 1e-122
P25269 475 Tryptophan synthase beta no no 0.925 0.604 0.714 1e-121
O50046 466 Tryptophan synthase beta N/A no 0.864 0.575 0.759 1e-117
P43284 443 Tryptophan synthase beta N/A no 0.732 0.512 0.831 1e-111
P43283 389 Tryptophan synthase beta N/A no 0.7 0.557 0.828 1e-105
Q3MBV3 413 Tryptophan synthase beta yes no 0.770 0.578 0.738 1e-104
Q8YQM6 413 Tryptophan synthase beta yes no 0.767 0.576 0.737 1e-103
Q118P8 409 Tryptophan synthase beta yes no 0.745 0.564 0.75 1e-102
Q8YZP7 409 Tryptophan synthase beta no no 0.745 0.564 0.734 1e-100
Q59992 412 Tryptophan synthase beta N/A no 0.751 0.565 0.720 2e-99
>sp|P14671|TRPB1_ARATH Tryptophan synthase beta chain 1, chloroplastic OS=Arabidopsis thaliana GN=TSB1 PE=2 SV=1 Back     alignment and function desciption
 Score =  437 bits (1124), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 217/277 (78%), Positives = 233/277 (84%), Gaps = 11/277 (3%)

Query: 26  QSPFKLKKFTASPAKSTSIR-----CTIARDPVVPMEAKKESDPAPWQRPDVFGRFGRFG 80
           +SPFK  K+T  P+  +        CTIA+DP V M A   SDPA WQRPD FGRFG+FG
Sbjct: 28  KSPFKAVKYTPLPSSRSKSSSFSVSCTIAKDPPVLMAAG--SDPALWQRPDSFGRFGKFG 85

Query: 81  GKFVPETLMYALSELESALHKLADDRDFQEELSGILRDYVGRETPLYFAERLTEHYRRPN 140
           GK+VPETLM+ALSELESA + LA D DFQ EL+GIL+DYVGRE+PLYFAERLTEHYRR N
Sbjct: 86  GKYVPETLMHALSELESAFYALATDDDFQRELAGILKDYVGRESPLYFAERLTEHYRREN 145

Query: 141 GGGPHIYLKREDLNHTGAHKINNAVGQALLAKRLGKTRIIAETGAGQHGVATATVCARFG 200
           G GP IYLKREDLNHTGAHKINNAV QALLAKRLGK RIIAETGAGQHGVATATVCARFG
Sbjct: 146 GEGPLIYLKREDLNHTGAHKINNAVAQALLAKRLGKKRIIAETGAGQHGVATATVCARFG 205

Query: 201 LQCIVYMGAQDMERQALNVFRMRLLGAEVRAVHSGTATLKDATSEAIRDWVTNVETTHYI 260
           L+CI+YMGAQDMERQALNVFRMRLLGAEVR VHSGTATLKDATSEAIRDWVTNVETTHYI
Sbjct: 206 LECIIYMGAQDMERQALNVFRMRLLGAEVRGVHSGTATLKDATSEAIRDWVTNVETTHYI 265

Query: 261 LGSVAGPHPYPMMVRDFHATSIGEMGWETRCADCMRW 297
           LGSVAGPHPYPMMVRDFHA     +G ETR     +W
Sbjct: 266 LGSVAGPHPYPMMVRDFHAV----IGKETRKQALEKW 298
The beta subunit is responsible for the synthesis of L-tryptophan from indole and L-serine.
Arabidopsis thaliana (taxid: 3702)
EC: 4EC: .EC: 2EC: .EC: 1EC: .EC: 2EC: 0
>sp|P25269|TRBP2_ARATH Tryptophan synthase beta chain 2, chloroplastic OS=Arabidopsis thaliana GN=TSB2 PE=2 SV=2 Back     alignment and function description
>sp|O50046|TRPB_CAMAC Tryptophan synthase beta chain 2, chloroplastic OS=Camptotheca acuminata GN=TSB PE=2 SV=1 Back     alignment and function description
>sp|P43284|TRPB2_MAIZE Tryptophan synthase beta chain 2, chloroplastic (Fragment) OS=Zea mays GN=TSB2 PE=2 SV=1 Back     alignment and function description
>sp|P43283|TRPB1_MAIZE Tryptophan synthase beta chain 1 (Fragment) OS=Zea mays GN=TSB1 PE=2 SV=1 Back     alignment and function description
>sp|Q3MBV3|TRPB_ANAVT Tryptophan synthase beta chain OS=Anabaena variabilis (strain ATCC 29413 / PCC 7937) GN=trpB PE=3 SV=1 Back     alignment and function description
>sp|Q8YQM6|TRPB2_NOSS1 Tryptophan synthase beta chain 2 OS=Nostoc sp. (strain PCC 7120 / UTEX 2576) GN=trpB2 PE=3 SV=1 Back     alignment and function description
>sp|Q118P8|TRPB_TRIEI Tryptophan synthase beta chain OS=Trichodesmium erythraeum (strain IMS101) GN=trpB PE=3 SV=1 Back     alignment and function description
>sp|Q8YZP7|TRPB1_NOSS1 Tryptophan synthase beta chain 1 OS=Nostoc sp. (strain PCC 7120 / UTEX 2576) GN=trpB1 PE=3 SV=1 Back     alignment and function description
>sp|Q59992|TRPB_SYNY3 Tryptophan synthase beta chain OS=Synechocystis sp. (strain PCC 6803 / Kazusa) GN=trpB PE=3 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query310
255564015394 tryptophan synthase beta chain, putative 0.867 0.682 0.812 1e-125
297796355 471 tryptophan synthase beta-subunit [Arabid 0.854 0.562 0.789 1e-120
15239755 470 tryptophan synthase beta chain [Arabidop 0.858 0.565 0.783 1e-120
449449611 472 PREDICTED: tryptophan synthase beta chai 0.877 0.576 0.742 1e-119
449485373 472 PREDICTED: tryptophan synthase beta chai 0.877 0.576 0.742 1e-119
15236977 475 tryptophan synthase beta chain [Arabidop 0.925 0.604 0.714 1e-119
297803394 471 tryptophan synthase beta-subunit [Arabid 0.9 0.592 0.737 1e-118
356567382 471 PREDICTED: tryptophan synthase beta chai 0.867 0.571 0.747 1e-116
3915165 466 RecName: Full=Tryptophan synthase beta c 0.864 0.575 0.759 1e-115
225461050 458 PREDICTED: tryptophan synthase beta chai 0.848 0.574 0.762 1e-114
>gi|255564015|ref|XP_002523007.1| tryptophan synthase beta chain, putative [Ricinus communis] gi|223537819|gb|EEF39437.1| tryptophan synthase beta chain, putative [Ricinus communis] Back     alignment and taxonomy information
 Score =  454 bits (1168), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 225/277 (81%), Positives = 240/277 (86%), Gaps = 8/277 (2%)

Query: 25  SQSPFKLKKFTAS-PAKS-TSIRCTIARD-PVVPMEAKKE-SDPAPWQRPDVFGRFGRFG 80
           SQ PFKLKKFT + P+ S  S+ CT+ R+   V ME +KE SDPA WQRPD FGRFG+FG
Sbjct: 31  SQLPFKLKKFTKTCPSSSGLSVSCTLTREASAVKMEEEKEGSDPALWQRPDSFGRFGQFG 90

Query: 81  GKFVPETLMYALSELESALHKLADDRDFQEELSGILRDYVGRETPLYFAERLTEHYRRPN 140
           GK+VPETLMYALSELESA H L DD DFQ+EL GIL+DYVGRETPLYFAERLTEHY RPN
Sbjct: 91  GKYVPETLMYALSELESAFHSLKDDLDFQKELDGILKDYVGRETPLYFAERLTEHYGRPN 150

Query: 141 GGGPHIYLKREDLNHTGAHKINNAVGQALLAKRLGKTRIIAETGAGQHGVATATVCARFG 200
           G GPHIYLKREDLNHTGAHKINNA+GQ LLAKRLGK RIIAETGAGQHGVATATVCARFG
Sbjct: 151 GEGPHIYLKREDLNHTGAHKINNAIGQVLLAKRLGKERIIAETGAGQHGVATATVCARFG 210

Query: 201 LQCIVYMGAQDMERQALNVFRMRLLGAEVRAVHSGTATLKDATSEAIRDWVTNVETTHYI 260
           LQCI+YMGAQDMERQALNVFRMRLLGAEVRAVHSGTATLKDATSEAIRDWVTNVETTHYI
Sbjct: 211 LQCIIYMGAQDMERQALNVFRMRLLGAEVRAVHSGTATLKDATSEAIRDWVTNVETTHYI 270

Query: 261 LGSVAGPHPYPMMVRDFHATSIGEMGWETRCADCMRW 297
           LGSVAGPHPYPMMVR+FH      +G ETR     +W
Sbjct: 271 LGSVAGPHPYPMMVREFHRI----IGTETRRQAMEKW 303

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|297796355|ref|XP_002866062.1| tryptophan synthase beta-subunit [Arabidopsis lyrata subsp. lyrata] gi|297311897|gb|EFH42321.1| tryptophan synthase beta-subunit [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|15239755|ref|NP_200292.1| tryptophan synthase beta chain [Arabidopsis thaliana] gi|136251|sp|P14671.1|TRPB1_ARATH RecName: Full=Tryptophan synthase beta chain 1, chloroplastic; Flags: Precursor gi|14194117|gb|AAK56253.1|AF367264_1 AT5g54810/MBG8_7 [Arabidopsis thaliana] gi|166892|gb|AAA32878.1| tryptophan synthase beta subunit [Arabidopsis thaliana] gi|9758261|dbj|BAB08760.1| tryptophan synthase beta chain 1 precursor [Arabidopsis thaliana] gi|21592983|gb|AAM64932.1| tryptophan synthase beta chain 1 precursor [Arabidopsis thaliana] gi|22137210|gb|AAM91450.1| AT5g54810/MBG8_7 [Arabidopsis thaliana] gi|110742593|dbj|BAE99210.1| tryptophan synthase beta chain 1 precursor [Arabidopsis thaliana] gi|332009160|gb|AED96543.1| tryptophan synthase beta chain [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|449449611|ref|XP_004142558.1| PREDICTED: tryptophan synthase beta chain 2, chloroplastic-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|449485373|ref|XP_004157148.1| PREDICTED: tryptophan synthase beta chain 2, chloroplastic-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|15236977|ref|NP_194437.1| tryptophan synthase beta chain [Arabidopsis thaliana] gi|1174779|sp|P25269.2|TRBP2_ARATH RecName: Full=Tryptophan synthase beta chain 2, chloroplastic; Flags: Precursor gi|166894|gb|AAA32879.1| tryptophan synthase beta-subunit [Arabidopsis thaliana] gi|4490703|emb|CAB38837.1| tryptophan synthase beta-subunit (TSB2) [Arabidopsis thaliana] gi|7269560|emb|CAB79562.1| tryptophan synthase beta-subunit (TSB2) [Arabidopsis thaliana] gi|21536585|gb|AAM60917.1| tryptophan synthase beta-subunit TSB2 [Arabidopsis thaliana] gi|27808592|gb|AAO24576.1| At4g27070 [Arabidopsis thaliana] gi|110736231|dbj|BAF00086.1| tryptophan synthase beta-subunit [Arabidopsis thaliana] gi|332659896|gb|AEE85296.1| tryptophan synthase beta chain [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|297803394|ref|XP_002869581.1| tryptophan synthase beta-subunit [Arabidopsis lyrata subsp. lyrata] gi|297315417|gb|EFH45840.1| tryptophan synthase beta-subunit [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|356567382|ref|XP_003551899.1| PREDICTED: tryptophan synthase beta chain 2, chloroplastic-like [Glycine max] Back     alignment and taxonomy information
>gi|3915165|sp|O50046.1|TRPB_CAMAC RecName: Full=Tryptophan synthase beta chain 2, chloroplastic; Flags: Precursor gi|2792520|gb|AAB97087.1| tryptophan synthase beta subunit [Camptotheca acuminata] gi|2801771|gb|AAB97526.1| tryptophan synthase beta [Camptotheca acuminata] Back     alignment and taxonomy information
>gi|225461050|ref|XP_002281484.1| PREDICTED: tryptophan synthase beta chain 2, chloroplastic [Vitis vinifera] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query310
TAIR|locus:2160190 470 TSB1 "tryptophan synthase beta 0.929 0.612 0.718 9.5e-105
TAIR|locus:2005543 475 TSB2 "tryptophan synthase beta 0.932 0.608 0.695 6e-103
TIGR_CMR|BA_1253 397 BA_1253 "tryptophan synthase, 0.625 0.488 0.63 5.2e-65
TIGR_CMR|SPO_0808 416 SPO_0808 "tryptophan synthase, 0.629 0.468 0.641 1.8e-64
TIGR_CMR|DET_1487 399 DET_1487 "tryptophan synthase, 0.629 0.488 0.646 2.3e-64
TIGR_CMR|CHY_1582 402 CHY_1582 "tryptophan synthase, 0.683 0.527 0.591 4.7e-64
ASPGD|ASPL0000007723 723 trpB [Emericella nidulans (tax 0.625 0.268 0.621 1e-61
TAIR|locus:1006230667 465 AT5G28237 "AT5G28237" [Arabido 0.645 0.430 0.590 3.4e-61
CGD|CAL0004378 702 TRP5 [Candida albicans (taxid: 0.625 0.276 0.606 3.9e-60
UNIPROTKB|Q59KP3 702 TRP5 "Likely tryptophan synthe 0.625 0.276 0.606 3.9e-60
TAIR|locus:2160190 TSB1 "tryptophan synthase beta-subunit 1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1037 (370.1 bits), Expect = 9.5e-105, P = 9.5e-105
 Identities = 217/302 (71%), Positives = 240/302 (79%)

Query:     4 ATGSSSCCKLAKPCAFTTSNSS---QSPFKLKKFTASPA---KSTS--IRCTIARDPVVP 55
             A+G+S+  + +   A ++S+     +SPFK  K+T  P+   KS+S  + CTIA+DP V 
Sbjct:     3 ASGTSATFRASVSSAPSSSSQLTHLKSPFKAVKYTPLPSSRSKSSSFSVSCTIAKDPPVL 62

Query:    56 MEAKKESDPAPWQRPDVXXXXXXXXXXXVPETLMYALSELESALHKLADDRDFQEELSGI 115
             M A   SDPA WQRPD            VPETLM+ALSELESA + LA D DFQ EL+GI
Sbjct:    63 MAAG--SDPALWQRPDSFGRFGKFGGKYVPETLMHALSELESAFYALATDDDFQRELAGI 120

Query:   116 LRDYVGRETPLYFAERLTEHYRRPNGGGPHIYLKREDLNHTGAHKINNAVGQALLAKRLG 175
             L+DYVGRE+PLYFAERLTEHYRR NG GP IYLKREDLNHTGAHKINNAV QALLAKRLG
Sbjct:   121 LKDYVGRESPLYFAERLTEHYRRENGEGPLIYLKREDLNHTGAHKINNAVAQALLAKRLG 180

Query:   176 KTRIIAETGAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEVRAVHSG 235
             K RIIAETGAGQHGVATATVCARFGL+CI+YMGAQDMERQALNVFRMRLLGAEVR VHSG
Sbjct:   181 KKRIIAETGAGQHGVATATVCARFGLECIIYMGAQDMERQALNVFRMRLLGAEVRGVHSG 240

Query:   236 TATLKDATSEAIRDWVTNVETTHYILGSVAGPHPYPMMVRDFHATSIGEMGWETRCADCM 295
             TATLKDATSEAIRDWVTNVETTHYILGSVAGPHPYPMMVRDFHA  IG+   ETR     
Sbjct:   241 TATLKDATSEAIRDWVTNVETTHYILGSVAGPHPYPMMVRDFHAV-IGK---ETRKQALE 296

Query:   296 RW 297
             +W
Sbjct:   297 KW 298
GO:0003824 "catalytic activity" evidence=IEA
GO:0004834 "tryptophan synthase activity" evidence=IEA;IMP;IDA
GO:0006568 "tryptophan metabolic process" evidence=IEA
GO:0008152 "metabolic process" evidence=IEA
GO:0009507 "chloroplast" evidence=ISM;ISS;IDA
GO:0030170 "pyridoxal phosphate binding" evidence=IEA
GO:0009651 "response to salt stress" evidence=IEP
GO:0009570 "chloroplast stroma" evidence=IDA
GO:0005886 "plasma membrane" evidence=IDA
GO:0000162 "tryptophan biosynthetic process" evidence=TAS
GO:0009684 "indoleacetic acid biosynthetic process" evidence=TAS
GO:0006979 "response to oxidative stress" evidence=IEP
TAIR|locus:2005543 TSB2 "tryptophan synthase beta-subunit 2" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TIGR_CMR|BA_1253 BA_1253 "tryptophan synthase, beta subunit" [Bacillus anthracis str. Ames (taxid:198094)] Back     alignment and assigned GO terms
TIGR_CMR|SPO_0808 SPO_0808 "tryptophan synthase, beta subunit" [Ruegeria pomeroyi DSS-3 (taxid:246200)] Back     alignment and assigned GO terms
TIGR_CMR|DET_1487 DET_1487 "tryptophan synthase, beta subunit" [Dehalococcoides ethenogenes 195 (taxid:243164)] Back     alignment and assigned GO terms
TIGR_CMR|CHY_1582 CHY_1582 "tryptophan synthase, beta subunit" [Carboxydothermus hydrogenoformans Z-2901 (taxid:246194)] Back     alignment and assigned GO terms
ASPGD|ASPL0000007723 trpB [Emericella nidulans (taxid:162425)] Back     alignment and assigned GO terms
TAIR|locus:1006230667 AT5G28237 "AT5G28237" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
CGD|CAL0004378 TRP5 [Candida albicans (taxid:5476)] Back     alignment and assigned GO terms
UNIPROTKB|Q59KP3 TRP5 "Likely tryptophan synthetase alpha chain" [Candida albicans SC5314 (taxid:237561)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q8YQM6TRPB2_NOSS14, ., 2, ., 1, ., 2, 00.73790.76770.5762yesno
Q0I6V1TRPB_SYNS34, ., 2, ., 1, ., 2, 00.76010.70.5191yesno
Q3AW11TRPB_SYNS94, ., 2, ., 1, ., 2, 00.73560.71610.5311yesno
A5GP60TRPB_SYNPW4, ., 2, ., 1, ., 2, 00.75100.72250.5384yesno
Q8DG49TRPB_THEEB4, ., 2, ., 1, ., 2, 00.73440.74190.5609yesno
P14671TRPB1_ARATH4, ., 2, ., 1, ., 2, 00.78330.85800.5659yesno
A9BD24TRPB_PROM44, ., 2, ., 1, ., 2, 00.72880.71930.5360yesno
Q7TTS6TRPB_SYNPX4, ., 2, ., 1, ., 2, 00.74020.71930.5334yesno
Q7NGX9TRPB_GLOVI4, ., 2, ., 1, ., 2, 00.72070.68700.5144yesno
Q7VE26TRPB_PROMA4, ., 2, ., 1, ., 2, 00.73330.71930.5360yesno
Q3AGY2TRPB_SYNSC4, ., 2, ., 1, ., 2, 00.760.70960.5263yesno
A2BZZ2TRPB_PROM14, ., 2, ., 1, ., 2, 00.74660.72250.5371yesno
Q3MBV3TRPB_ANAVT4, ., 2, ., 1, ., 2, 00.73890.77090.5786yesno
Q7TUL2TRPB_PROMM4, ., 2, ., 1, ., 2, 00.73300.73870.5252yesno
Q118P8TRPB_TRIEI4, ., 2, ., 1, ., 2, 00.750.74510.5647yesno
Q46HK9TRPB_PROMT4, ., 2, ., 1, ., 2, 00.74660.72250.5371yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
4th Layer4.2.1.200.914
3rd Layer4.2.10.921

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
TSB1
TSB1 (TRYPTOPHAN SYNTHASE BETA-SUBUNIT 1); tryptophan synthase; A.thaliana tryptophan synthase beta subunit (trpB) ; The beta subunit is responsible for the synthesis of L- tryptophan from indole and L-serine (470 aa)
(Arabidopsis thaliana)
Predicted Functional Partners:
AT5G48220
indole-3-glycerol phosphate synthase, putative; indole-3-glycerol phosphate synthase, putative; [...] (379 aa)
•••• •• 0.997
TRPA
tryptophan synthase, alpha subunit, putative; tryptophan synthase, alpha subunit, putative; FUN [...] (275 aa)
••••••• 0.997
At3g54640
TSA1 (TRYPTOPHAN SYNTHASE ALPHA CHAIN); tryptophan synthase; Catalyzes the conversion of indole [...] (312 aa)
••••••• 0.995
AT2G04400
indole-3-glycerol phosphate synthase (IGPS); indole-3-glycerol phosphate synthase (IGPS); FUNCT [...] (402 aa)
•••• •• 0.994
AT5G17990.1-P
TRP1 (tryptophan biosynthesis 1); anthranilate phosphoribosyltransferase; Encodes the tryptopha [...] (444 aa)
•  • •• 0.990
PAI2
PAI2 (PHOSPHORIBOSYLANTHRANILATE ISOMERASE 2); phosphoribosylanthranilate isomerase; Encodes ph [...] (275 aa)
•••   • 0.953
PAI1
PAI1 (PHOSPHORIBOSYLANTHRANILATE ISOMERASE 1); phosphoribosylanthranilate isomerase; Encodes ph [...] (275 aa)
•••   • 0.948
OVA4
OVA4 (ovule abortion 4); ATP binding / aminoacyl-tRNA ligase/ nucleotide binding / tryptophan-t [...] (412 aa)
•    •• 0.945
ASA2
ASA2 (ANTHRANILATE SYNTHASE 2); anthranilate synthase; Encode a functional anthranilate synthas [...] (621 aa)
•  •  • 0.939
ASA1
ASA1 (ANTHRANILATE SYNTHASE ALPHA SUBUNIT 1); anthranilate synthase; ASA1 encodes the alpha sub [...] (595 aa)
•  •  • 0.932

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query310
PLN02618 410 PLN02618, PLN02618, tryptophan synthase, beta chai 1e-167
PRK04346 397 PRK04346, PRK04346, tryptophan synthase subunit be 1e-165
COG0133 396 COG0133, TrpB, Tryptophan synthase beta chain [Ami 1e-151
PRK13028 402 PRK13028, PRK13028, tryptophan synthase subunit be 1e-128
TIGR00263 385 TIGR00263, trpB, tryptophan synthase, beta subunit 1e-126
cd06446 365 cd06446, Trp-synth_B, Tryptophan synthase-beta: Tr 1e-125
PRK13803 610 PRK13803, PRK13803, bifunctional phosphoribosylant 1e-121
PRK13802 695 PRK13802, PRK13802, bifunctional indole-3-glycerol 8e-89
cd00640244 cd00640, Trp-synth-beta_II, Tryptophan synthase be 6e-39
PRK12391 427 PRK12391, PRK12391, tryptophan synthase subunit be 4e-29
COG1350 432 COG1350, COG1350, Predicted alternative tryptophan 4e-26
TIGR01415 419 TIGR01415, trpB_rel, pyridoxal-phosphate dependent 2e-25
pfam00291 295 pfam00291, PALP, Pyridoxal-phosphate dependent enz 4e-20
cd01562 304 cd01562, Thr-dehyd, Threonine dehydratase: The fir 1e-11
COG1171 347 COG1171, IlvA, Threonine dehydratase [Amino acid t 5e-11
PRK03910 331 PRK03910, PRK03910, D-cysteine desulfhydrase; Vali 1e-10
cd01561 291 cd01561, CBS_like, CBS_like: This subgroup include 4e-10
PRK06815 317 PRK06815, PRK06815, hypothetical protein; Provisio 2e-09
COG2515 323 COG2515, Acd, 1-aminocyclopropane-1-carboxylate de 3e-09
cd01563 324 cd01563, Thr-synth_1, Threonine synthase is a pyri 1e-08
TIGR02079 409 TIGR02079, THD1, threonine dehydratase 3e-08
COG0031 300 COG0031, CysK, Cysteine synthase [Amino acid trans 4e-08
PRK08246 310 PRK08246, PRK08246, threonine dehydratase; Provisi 3e-07
cd06449 307 cd06449, ACCD, Aminocyclopropane-1-carboxylate dea 3e-07
PRK08639 420 PRK08639, PRK08639, threonine dehydratase; Validat 2e-06
PRK07476 322 PRK07476, eutB, threonine dehydratase; Provisional 3e-06
PRK08526 403 PRK08526, PRK08526, threonine dehydratase; Provisi 1e-05
TIGR01275 318 TIGR01275, ACC_deam_rel, pyridoxal phosphate-depen 3e-05
PRK08197 394 PRK08197, PRK08197, threonine synthase; Validated 3e-05
PRK08813 349 PRK08813, PRK08813, threonine dehydratase; Provisi 4e-05
TIGR01136 299 TIGR01136, cysKM, cysteine synthase 7e-05
PRK06608 338 PRK06608, PRK06608, threonine dehydratase; Provisi 8e-05
TIGR02991 317 TIGR02991, ectoine_eutB, ectoine utilization prote 1e-04
TIGR03945 304 TIGR03945, PLP_SbnA_fam, 2,3-diaminopropionate bio 2e-04
COG0498 411 COG0498, ThrC, Threonine synthase [Amino acid tran 2e-04
PRK12483 521 PRK12483, PRK12483, threonine dehydratase; Reviewe 6e-04
TIGR01139 298 TIGR01139, cysK, cysteine synthase A 0.001
cd06448 316 cd06448, L-Ser-dehyd, Serine dehydratase is a pyri 0.002
PRK12390 337 PRK12390, PRK12390, 1-aminocyclopropane-1-carboxyl 0.002
PRK10717 330 PRK10717, PRK10717, cysteine synthase A; Provision 0.002
PRK08198 404 PRK08198, PRK08198, threonine dehydratase; Provisi 0.004
>gnl|CDD|215333 PLN02618, PLN02618, tryptophan synthase, beta chain Back     alignment and domain information 
 Score =  469 bits (1208), Expect = e-167
 Identities = 198/238 (83%), Positives = 211/238 (88%), Gaps = 5/238 (2%)

Query: 61  ESDPAPWQRPDVFGRFGRFGGKFVPETLMYALSELESALHKLADDRDFQEELSGILRDYV 120
            SDP  +QRPD FGRFG+FGGK+VPETLM ALSELE+A + LA D +FQEEL+GIL+DYV
Sbjct: 4   GSDPTGFQRPDSFGRFGKFGGKYVPETLMTALSELEAAFNALATDPEFQEELAGILKDYV 63

Query: 121 GRETPLYFAERLTEHYRRPNGGGPHIYLKREDLNHTGAHKINNAVGQALLAKRLGKTRII 180
           GRETPLYFAERLTEHY+R +G GP IYLKREDLNHTGAHKINNAV QALLAKRLGK RII
Sbjct: 64  GRETPLYFAERLTEHYKRADGEGPEIYLKREDLNHTGAHKINNAVAQALLAKRLGKKRII 123

Query: 181 AETGAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEVRAVHSGTATLK 240
           AETGAGQHGVATATVCARFGL+CIVYMGAQDMERQALNVFRMRLLGAEVR VHSGTATLK
Sbjct: 124 AETGAGQHGVATATVCARFGLECIVYMGAQDMERQALNVFRMRLLGAEVRPVHSGTATLK 183

Query: 241 DATSEAIRDWVTNVETTHYILGSVAGPHPYPMMVRDFHATSIGEMGWETRCADCMRWW 298
           DATSEAIRDWVTNVETTHYILGSVAGPHPYPMMVRDFH+     +G ETR    M  W
Sbjct: 184 DATSEAIRDWVTNVETTHYILGSVAGPHPYPMMVRDFHSV----IGKETR-RQAMEKW 236

Length = 410
>gnl|CDD|235288 PRK04346, PRK04346, tryptophan synthase subunit beta; Validated Back     alignment and domain information
>gnl|CDD|223211 COG0133, TrpB, Tryptophan synthase beta chain [Amino acid transport and metabolism] Back     alignment and domain information
>gnl|CDD|183851 PRK13028, PRK13028, tryptophan synthase subunit beta; Provisional Back     alignment and domain information
>gnl|CDD|232897 TIGR00263, trpB, tryptophan synthase, beta subunit Back     alignment and domain information
>gnl|CDD|107207 cd06446, Trp-synth_B, Tryptophan synthase-beta: Trptophan synthase is a bifunctional enzyme that catalyses the last two steps in the biosynthesis of L-tryptophan via its alpha and beta reactions Back     alignment and domain information
>gnl|CDD|237513 PRK13803, PRK13803, bifunctional phosphoribosylanthranilate isomerase/tryptophan synthase subunit beta; Provisional Back     alignment and domain information
>gnl|CDD|184335 PRK13802, PRK13802, bifunctional indole-3-glycerol phosphate synthase/tryptophan synthase subunit beta; Provisional Back     alignment and domain information
>gnl|CDD|107202 cd00640, Trp-synth-beta_II, Tryptophan synthase beta superfamily (fold type II); this family of pyridoxal phosphate (PLP)-dependent enzymes catalyzes beta-replacement and beta-elimination reactions Back     alignment and domain information
>gnl|CDD|237087 PRK12391, PRK12391, tryptophan synthase subunit beta; Reviewed Back     alignment and domain information
>gnl|CDD|224269 COG1350, COG1350, Predicted alternative tryptophan synthase beta-subunit (paralog of TrpB) [General function prediction only] Back     alignment and domain information
>gnl|CDD|233403 TIGR01415, trpB_rel, pyridoxal-phosphate dependent TrpB-like enzyme Back     alignment and domain information
>gnl|CDD|215840 pfam00291, PALP, Pyridoxal-phosphate dependent enzyme Back     alignment and domain information
>gnl|CDD|107205 cd01562, Thr-dehyd, Threonine dehydratase: The first step in amino acid degradation is the removal of nitrogen Back     alignment and domain information
>gnl|CDD|224092 COG1171, IlvA, Threonine dehydratase [Amino acid transport and metabolism] Back     alignment and domain information
>gnl|CDD|179673 PRK03910, PRK03910, D-cysteine desulfhydrase; Validated Back     alignment and domain information
>gnl|CDD|107204 cd01561, CBS_like, CBS_like: This subgroup includes Cystathionine beta-synthase (CBS) and Cysteine synthase Back     alignment and domain information
>gnl|CDD|180709 PRK06815, PRK06815, hypothetical protein; Provisional Back     alignment and domain information
>gnl|CDD|225313 COG2515, Acd, 1-aminocyclopropane-1-carboxylate deaminase [Amino acid transport and metabolism] Back     alignment and domain information
>gnl|CDD|107206 cd01563, Thr-synth_1, Threonine synthase is a pyridoxal phosphate (PLP) dependent enzyme that catalyses the last reaction in the synthesis of threonine from aspartate Back     alignment and domain information
>gnl|CDD|233712 TIGR02079, THD1, threonine dehydratase Back     alignment and domain information
>gnl|CDD|223110 COG0031, CysK, Cysteine synthase [Amino acid transport and metabolism] Back     alignment and domain information
>gnl|CDD|181319 PRK08246, PRK08246, threonine dehydratase; Provisional Back     alignment and domain information
>gnl|CDD|107210 cd06449, ACCD, Aminocyclopropane-1-carboxylate deaminase (ACCD): Pyridoxal phosphate (PLP)-dependent enzyme which catalyzes the conversion of 1-aminocyclopropane-L-carboxylate (ACC), a precursor of the plant hormone ethylene, to alpha-ketobutyrate and ammonia Back     alignment and domain information
>gnl|CDD|236318 PRK08639, PRK08639, threonine dehydratase; Validated Back     alignment and domain information
>gnl|CDD|236025 PRK07476, eutB, threonine dehydratase; Provisional Back     alignment and domain information
>gnl|CDD|181457 PRK08526, PRK08526, threonine dehydratase; Provisional Back     alignment and domain information
>gnl|CDD|233338 TIGR01275, ACC_deam_rel, pyridoxal phosphate-dependent enzymes, D-cysteine desulfhydrase family Back     alignment and domain information
>gnl|CDD|181283 PRK08197, PRK08197, threonine synthase; Validated Back     alignment and domain information
>gnl|CDD|236339 PRK08813, PRK08813, threonine dehydratase; Provisional Back     alignment and domain information
>gnl|CDD|233286 TIGR01136, cysKM, cysteine synthase Back     alignment and domain information
>gnl|CDD|235842 PRK06608, PRK06608, threonine dehydratase; Provisional Back     alignment and domain information
>gnl|CDD|132036 TIGR02991, ectoine_eutB, ectoine utilization protein EutB Back     alignment and domain information
>gnl|CDD|234409 TIGR03945, PLP_SbnA_fam, 2,3-diaminopropionate biosynthesis protein SbnA Back     alignment and domain information
>gnl|CDD|223572 COG0498, ThrC, Threonine synthase [Amino acid transport and metabolism] Back     alignment and domain information
>gnl|CDD|237111 PRK12483, PRK12483, threonine dehydratase; Reviewed Back     alignment and domain information
>gnl|CDD|233288 TIGR01139, cysK, cysteine synthase A Back     alignment and domain information
>gnl|CDD|107209 cd06448, L-Ser-dehyd, Serine dehydratase is a pyridoxal phosphate (PLP)-dependent enzyme which catalyzes the conversion of L- , D-serine, or L-threonine to pyruvate/ketobutyrate and ammonia Back     alignment and domain information
>gnl|CDD|183494 PRK12390, PRK12390, 1-aminocyclopropane-1-carboxylate deaminase; Provisional Back     alignment and domain information
>gnl|CDD|182672 PRK10717, PRK10717, cysteine synthase A; Provisional Back     alignment and domain information
>gnl|CDD|236182 PRK08198, PRK08198, threonine dehydratase; Provisional Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 310
COG0133 396 TrpB Tryptophan synthase beta chain [Amino acid tr 100.0
PRK04346 397 tryptophan synthase subunit beta; Validated 100.0
PLN02618 410 tryptophan synthase, beta chain 100.0
PRK13028 402 tryptophan synthase subunit beta; Provisional 100.0
KOG1395 477 consensus Tryptophan synthase beta chain [Amino ac 100.0
PRK13803 610 bifunctional phosphoribosylanthranilate isomerase/ 100.0
PRK13802 695 bifunctional indole-3-glycerol phosphate synthase/ 100.0
TIGR00263 385 trpB tryptophan synthase, beta subunit. Tryptophan 100.0
COG1171 347 IlvA Threonine dehydratase [Amino acid transport a 100.0
cd06446 365 Trp-synth_B Tryptophan synthase-beta: Trptophan sy 100.0
PRK08526 403 threonine dehydratase; Provisional 100.0
PRK07476 322 eutB threonine dehydratase; Provisional 100.0
PRK06382 406 threonine dehydratase; Provisional 100.0
PRK08198 404 threonine dehydratase; Provisional 100.0
PLN02970 328 serine racemase 100.0
PRK06110 322 hypothetical protein; Provisional 100.0
PRK08639 420 threonine dehydratase; Validated 100.0
PRK12483 521 threonine dehydratase; Reviewed 99.98
PRK08638 333 threonine dehydratase; Validated 99.98
PRK07048 321 serine/threonine dehydratase; Validated 99.98
TIGR02079 409 THD1 threonine dehydratase. This model represents 99.98
PRK08813 349 threonine dehydratase; Provisional 99.98
TIGR02991 317 ectoine_eutB ectoine utilization protein EutB. Mem 99.97
PRK06608 338 threonine dehydratase; Provisional 99.97
PRK07334 403 threonine dehydratase; Provisional 99.97
cd01562 304 Thr-dehyd Threonine dehydratase: The first step in 99.97
cd06447 404 D-Ser-dehyd D-Serine dehydratase is a pyridoxal ph 99.97
PRK06815 317 hypothetical protein; Provisional 99.97
PLN02550 591 threonine dehydratase 99.97
PRK11761296 cysM cysteine synthase B; Provisional 99.97
TIGR01138290 cysM cysteine synthase B. Alternate name: O-acetyl 99.97
PRK08246 310 threonine dehydratase; Provisional 99.97
TIGR01127 380 ilvA_1Cterm threonine dehydratase, medium form. A 99.97
TIGR01124 499 ilvA_2Cterm threonine ammonia-lyase, biosynthetic, 99.97
KOG1250 457 consensus Threonine/serine dehydratases [Amino aci 99.97
PRK09224 504 threonine dehydratase; Reviewed 99.97
TIGR01136299 cysKM cysteine synthases. This model discriminates 99.97
PLN02565 322 cysteine synthase 99.97
PRK06381 319 threonine synthase; Validated 99.97
PLN03013 429 cysteine synthase 99.97
TIGR01415 419 trpB_rel pyridoxal-phosphate dependent TrpB-like e 99.97
cd01561291 CBS_like CBS_like: This subgroup includes Cystathi 99.97
PLN00011 323 cysteine synthase 99.97
TIGR01139298 cysK cysteine synthase A. This model distinguishes 99.97
PRK07591 421 threonine synthase; Validated 99.97
PRK08197 394 threonine synthase; Validated 99.97
cd06448 316 L-Ser-dehyd Serine dehydratase is a pyridoxal phos 99.97
PRK02991 441 D-serine dehydratase; Provisional 99.97
TIGR02035 431 D_Ser_am_lyase D-serine ammonia-lyase. This family 99.97
PRK10717 330 cysteine synthase A; Provisional 99.97
PRK06352 351 threonine synthase; Validated 99.97
PLN02556 368 cysteine synthase/L-3-cyanoalanine synthase 99.97
COG0031300 CysK Cysteine synthase [Amino acid transport and m 99.96
PLN02356 423 phosphateglycerate kinase 99.96
PRK06450 338 threonine synthase; Validated 99.96
PRK05638 442 threonine synthase; Validated 99.96
PRK12391 427 tryptophan synthase subunit beta; Reviewed 99.96
PRK06260 397 threonine synthase; Validated 99.96
PLN02569 484 threonine synthase 99.96
PRK08329 347 threonine synthase; Validated 99.96
TIGR01137 454 cysta_beta cystathionine beta-synthase. Members of 99.96
PRK07409 353 threonine synthase; Validated 99.96
KOG1251 323 consensus Serine racemase [Signal transduction mec 99.96
cd01563 324 Thr-synth_1 Threonine synthase is a pyridoxal phos 99.96
PRK06721 352 threonine synthase; Reviewed 99.96
PRK08206 399 diaminopropionate ammonia-lyase; Provisional 99.96
cd00640244 Trp-synth-beta_II Tryptophan synthase beta superfa 99.96
TIGR01275 311 ACC_deam_rel pyridoxal phosphate-dependent enzymes 99.95
TIGR00260 328 thrC threonine synthase. Involved in threonine bio 99.95
TIGR01747 376 diampropi_NH3ly diaminopropionate ammonia-lyase fa 99.94
TIGR03528 396 2_3_DAP_am_ly diaminopropionate ammonia-lyase. Mem 99.94
PRK12390 337 1-aminocyclopropane-1-carboxylate deaminase; Provi 99.94
PF00291 306 PALP: Pyridoxal-phosphate dependent enzyme; InterP 99.93
cd06449307 ACCD Aminocyclopropane-1-carboxylate deaminase (AC 99.93
PRK03910 331 D-cysteine desulfhydrase; Validated 99.93
TIGR01274 337 ACC_deam 1-aminocyclopropane-1-carboxylate deamina 99.93
TIGR03844 398 cysteate_syn cysteate synthase. Members of this fa 99.93
KOG1252 362 consensus Cystathionine beta-synthase and related 99.93
PRK14045 329 1-aminocyclopropane-1-carboxylate deaminase; Provi 99.93
COG1350 432 Predicted alternative tryptophan synthase beta-sub 99.92
COG0498 411 ThrC Threonine synthase [Amino acid transport and 99.91
KOG1481 391 consensus Cysteine synthase [Amino acid transport 99.9
PRK09225 462 threonine synthase; Validated 99.86
cd01560 460 Thr-synth_2 Threonine synthase catalyzes the final 99.85
COG2515 323 Acd 1-aminocyclopropane-1-carboxylate deaminase [A 99.7
COG3048 443 DsdA D-serine dehydratase [Amino acid transport an 99.0
PF1482179 Thr_synth_N: Threonine synthase N terminus; PDB: 3 89.69
PF05368 233 NmrA: NmrA-like family; InterPro: IPR008030 NmrA i 84.87
PF00106167 adh_short: short chain dehydrogenase alcohol dehyd 84.86
>COG0133 TrpB Tryptophan synthase beta chain [Amino acid transport and metabolism] Back     alignment and domain information 
Probab=100.00  E-value=1.9e-59  Score=437.49  Aligned_cols=221  Identities=70%  Similarity=1.091  Sum_probs=216.8

Q ss_pred             CCCCCCCccCCCccccccchhhhHHHHHHHHHHhcCChhHHHHHHHHHhhhcCCCCCEEEccccchhhcCCCCCCCeEEE
Q 021613           69 RPDVFGRFGRFGGKFVPETLMYALSELESALHKLADDRDFQEELSGILRDYVGRETPLYFAERLTEHYRRPNGGGPHIYL  148 (310)
Q Consensus        69 ~~~~~~~~g~~GG~~vPe~l~~~~~~i~~a~~~~~~d~~f~~el~~~l~~~vg~~TPL~~~~~Ls~~~~~~~~~g~~I~l  148 (310)
                      .||.+|+||.|||+||||+||+++++|+++|.+...|++|++|+...+++|+||||||+.+++|++.+      +++|||
T Consensus         2 ~~~~~g~fG~fGG~yVpE~Lmpal~eLe~ay~~~~~D~~F~~el~~~l~~Y~GRptpLy~a~~Lt~~~------gakiyL   75 (396)
T COG0133           2 YPDEKGYFGEFGGQYVPETLMPALEELEKAYEKAKNDPEFQAELDYLLKDYAGRPTPLYFAERLTEHL------GAKIYL   75 (396)
T ss_pred             CCccCCcccccCCEechHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCChhHHHHHHHHhh------CceEEE
Confidence            58899999999999999999999999999999999999999999999999999999999999999998      799999


Q ss_pred             EecCCCCCCChHHHHHHHHHHHhhhcCCCeEEEecCcchHHHHHHHHHHHcCCeEEEEeCCCchhchHHHHHHHHHCCCE
Q 021613          149 KREDLNHTGAHKINNAVGQALLAKRLGKTRIIAETGAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAE  228 (310)
Q Consensus       149 K~E~lnpTGSfK~Rga~~~l~~a~~~g~~~~Vv~aSsGNhg~AlA~aaa~~Gi~~~Ivmp~~~~~~~~~kv~~~~~~GA~  228 (310)
                      ||||+||||+||+++++.+++.|+++|++++|.++++|+||+|.|.+|+++|++|+|||...+++|+..|+.+|+.+||+
T Consensus        76 KREDL~HtGAHKiNN~lGQ~LLAkrMGK~riIAETGAGQHGVAtAta~A~fgl~C~iYMGa~Dv~RQ~~NVfRM~LlGA~  155 (396)
T COG0133          76 KREDLNHTGAHKINNALGQALLAKRMGKTRIIAETGAGQHGVATATAAALFGLECVIYMGAEDVERQALNVFRMRLLGAE  155 (396)
T ss_pred             ehhhhcccchhhHHHHHHHHHHHHHhCCceEEeecCCCcccHHHHHHHHHhCCceEEEecchhhhhcccchhhhhhcCce
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEEcCCCCCHHHHHHHHHHHHHHccCCceeecCCCCCCCChhhhhcccceeccchHHHHHHHHHHHHHhCC
Q 021613          229 VRAVHSGTATLKDATSEAIRDWVTNVETTHYILGSVAGPHPYPMMVRDFHATSIGEMGWETRCADCMRWWWF  300 (310)
Q Consensus       229 Vv~v~~~~~~~~da~~~a~~~~~~~~~~~~Yi~gs~~~~hp~~~iv~d~~~v~vGT~G~e~gi~q~l~~~~~  300 (310)
                      |+.|..++.+++||+++|+++|+.+++++||++|++.+|||||+||+|||.|    +|.|+. .|.++..+.
T Consensus       156 V~pV~sGs~TLKDA~neAlRdWvtn~~~ThY~iGsa~GPHPyP~iVRdFQ~v----IG~E~k-~Qile~egr  222 (396)
T COG0133         156 VVPVTSGSGTLKDAINEALRDWVTNVEDTHYLIGSAAGPHPYPTIVRDFQSV----IGEEAK-AQILEKEGR  222 (396)
T ss_pred             EEEeccCCchHHHHHHHHHHHHHhccccceEEEeeccCCCCchHHHHHHHHH----HhHHHH-HHHHHHhCC
Confidence            9999999999999999999999999999999999999999999999999999    999999 999988774

>PRK04346 tryptophan synthase subunit beta; Validated Back     alignment and domain information
>PLN02618 tryptophan synthase, beta chain Back     alignment and domain information
>PRK13028 tryptophan synthase subunit beta; Provisional Back     alignment and domain information
>KOG1395 consensus Tryptophan synthase beta chain [Amino acid transport and metabolism] Back     alignment and domain information
>PRK13803 bifunctional phosphoribosylanthranilate isomerase/tryptophan synthase subunit beta; Provisional Back     alignment and domain information
>PRK13802 bifunctional indole-3-glycerol phosphate synthase/tryptophan synthase subunit beta; Provisional Back     alignment and domain information
>TIGR00263 trpB tryptophan synthase, beta subunit Back     alignment and domain information
>COG1171 IlvA Threonine dehydratase [Amino acid transport and metabolism] Back     alignment and domain information
>cd06446 Trp-synth_B Tryptophan synthase-beta: Trptophan synthase is a bifunctional enzyme that catalyses the last two steps in the biosynthesis of L-tryptophan via its alpha and beta reactions Back     alignment and domain information
>PRK08526 threonine dehydratase; Provisional Back     alignment and domain information
>PRK07476 eutB threonine dehydratase; Provisional Back     alignment and domain information
>PRK06382 threonine dehydratase; Provisional Back     alignment and domain information
>PRK08198 threonine dehydratase; Provisional Back     alignment and domain information
>PLN02970 serine racemase Back     alignment and domain information
>PRK06110 hypothetical protein; Provisional Back     alignment and domain information
>PRK08639 threonine dehydratase; Validated Back     alignment and domain information
>PRK12483 threonine dehydratase; Reviewed Back     alignment and domain information
>PRK08638 threonine dehydratase; Validated Back     alignment and domain information
>PRK07048 serine/threonine dehydratase; Validated Back     alignment and domain information
>TIGR02079 THD1 threonine dehydratase Back     alignment and domain information
>PRK08813 threonine dehydratase; Provisional Back     alignment and domain information
>TIGR02991 ectoine_eutB ectoine utilization protein EutB Back     alignment and domain information
>PRK06608 threonine dehydratase; Provisional Back     alignment and domain information
>PRK07334 threonine dehydratase; Provisional Back     alignment and domain information
>cd01562 Thr-dehyd Threonine dehydratase: The first step in amino acid degradation is the removal of nitrogen Back     alignment and domain information
>cd06447 D-Ser-dehyd D-Serine dehydratase is a pyridoxal phosphate (PLP)-dependent enzyme which catalyzes the conversion of L- or D-serine to pyruvate and ammonia Back     alignment and domain information
>PRK06815 hypothetical protein; Provisional Back     alignment and domain information
>PLN02550 threonine dehydratase Back     alignment and domain information
>PRK11761 cysM cysteine synthase B; Provisional Back     alignment and domain information
>TIGR01138 cysM cysteine synthase B Back     alignment and domain information
>PRK08246 threonine dehydratase; Provisional Back     alignment and domain information
>TIGR01127 ilvA_1Cterm threonine dehydratase, medium form Back     alignment and domain information
>TIGR01124 ilvA_2Cterm threonine ammonia-lyase, biosynthetic, long form Back     alignment and domain information
>KOG1250 consensus Threonine/serine dehydratases [Amino acid transport and metabolism] Back     alignment and domain information
>PRK09224 threonine dehydratase; Reviewed Back     alignment and domain information
>TIGR01136 cysKM cysteine synthases Back     alignment and domain information
>PLN02565 cysteine synthase Back     alignment and domain information
>PRK06381 threonine synthase; Validated Back     alignment and domain information
>PLN03013 cysteine synthase Back     alignment and domain information
>TIGR01415 trpB_rel pyridoxal-phosphate dependent TrpB-like enzyme Back     alignment and domain information
>cd01561 CBS_like CBS_like: This subgroup includes Cystathionine beta-synthase (CBS) and Cysteine synthase Back     alignment and domain information
>PLN00011 cysteine synthase Back     alignment and domain information
>TIGR01139 cysK cysteine synthase A Back     alignment and domain information
>PRK07591 threonine synthase; Validated Back     alignment and domain information
>PRK08197 threonine synthase; Validated Back     alignment and domain information
>cd06448 L-Ser-dehyd Serine dehydratase is a pyridoxal phosphate (PLP)-dependent enzyme which catalyzes the conversion of L- , D-serine, or L-threonine to pyruvate/ketobutyrate and ammonia Back     alignment and domain information
>PRK02991 D-serine dehydratase; Provisional Back     alignment and domain information
>TIGR02035 D_Ser_am_lyase D-serine ammonia-lyase Back     alignment and domain information
>PRK10717 cysteine synthase A; Provisional Back     alignment and domain information
>PRK06352 threonine synthase; Validated Back     alignment and domain information
>PLN02556 cysteine synthase/L-3-cyanoalanine synthase Back     alignment and domain information
>COG0031 CysK Cysteine synthase [Amino acid transport and metabolism] Back     alignment and domain information
>PLN02356 phosphateglycerate kinase Back     alignment and domain information
>PRK06450 threonine synthase; Validated Back     alignment and domain information
>PRK05638 threonine synthase; Validated Back     alignment and domain information
>PRK12391 tryptophan synthase subunit beta; Reviewed Back     alignment and domain information
>PRK06260 threonine synthase; Validated Back     alignment and domain information
>PLN02569 threonine synthase Back     alignment and domain information
>PRK08329 threonine synthase; Validated Back     alignment and domain information
>TIGR01137 cysta_beta cystathionine beta-synthase Back     alignment and domain information
>PRK07409 threonine synthase; Validated Back     alignment and domain information
>KOG1251 consensus Serine racemase [Signal transduction mechanisms; Amino acid transport and metabolism] Back     alignment and domain information
>cd01563 Thr-synth_1 Threonine synthase is a pyridoxal phosphate (PLP) dependent enzyme that catalyses the last reaction in the synthesis of threonine from aspartate Back     alignment and domain information
>PRK06721 threonine synthase; Reviewed Back     alignment and domain information
>PRK08206 diaminopropionate ammonia-lyase; Provisional Back     alignment and domain information
>cd00640 Trp-synth-beta_II Tryptophan synthase beta superfamily (fold type II); this family of pyridoxal phosphate (PLP)-dependent enzymes catalyzes beta-replacement and beta-elimination reactions Back     alignment and domain information
>TIGR01275 ACC_deam_rel pyridoxal phosphate-dependent enzymes, D-cysteine desulfhydrase family Back     alignment and domain information
>TIGR00260 thrC threonine synthase Back     alignment and domain information
>TIGR01747 diampropi_NH3ly diaminopropionate ammonia-lyase family Back     alignment and domain information
>TIGR03528 2_3_DAP_am_ly diaminopropionate ammonia-lyase Back     alignment and domain information
>PRK12390 1-aminocyclopropane-1-carboxylate deaminase; Provisional Back     alignment and domain information
>PF00291 PALP: Pyridoxal-phosphate dependent enzyme; InterPro: IPR001926 Pyridoxal phosphate is the active form of vitamin B6 (pyridoxine or pyridoxal) Back     alignment and domain information
>cd06449 ACCD Aminocyclopropane-1-carboxylate deaminase (ACCD): Pyridoxal phosphate (PLP)-dependent enzyme which catalyzes the conversion of 1-aminocyclopropane-L-carboxylate (ACC), a precursor of the plant hormone ethylene, to alpha-ketobutyrate and ammonia Back     alignment and domain information
>PRK03910 D-cysteine desulfhydrase; Validated Back     alignment and domain information
>TIGR01274 ACC_deam 1-aminocyclopropane-1-carboxylate deaminase Back     alignment and domain information
>TIGR03844 cysteate_syn cysteate synthase Back     alignment and domain information
>KOG1252 consensus Cystathionine beta-synthase and related enzymes [Amino acid transport and metabolism] Back     alignment and domain information
>PRK14045 1-aminocyclopropane-1-carboxylate deaminase; Provisional Back     alignment and domain information
>COG1350 Predicted alternative tryptophan synthase beta-subunit (paralog of TrpB) [General function prediction only] Back     alignment and domain information
>COG0498 ThrC Threonine synthase [Amino acid transport and metabolism] Back     alignment and domain information
>KOG1481 consensus Cysteine synthase [Amino acid transport and metabolism] Back     alignment and domain information
>PRK09225 threonine synthase; Validated Back     alignment and domain information
>cd01560 Thr-synth_2 Threonine synthase catalyzes the final step of threonine biosynthesis Back     alignment and domain information
>COG2515 Acd 1-aminocyclopropane-1-carboxylate deaminase [Amino acid transport and metabolism] Back     alignment and domain information
>COG3048 DsdA D-serine dehydratase [Amino acid transport and metabolism] Back     alignment and domain information
>PF14821 Thr_synth_N: Threonine synthase N terminus; PDB: 3V7N_A 1VB3_A 1KL7_A Back     alignment and domain information
>PF05368 NmrA: NmrA-like family; InterPro: IPR008030 NmrA is a negative transcriptional regulator involved in the post-translational modification of the transcription factor AreA Back     alignment and domain information
>PF00106 adh_short: short chain dehydrogenase alcohol dehydrogenase superfamily signature glucose/ribitol dehydrogenase family signature; InterPro: IPR002198 The short-chain dehydrogenases/reductases family (SDR) [] is a very large family of enzymes, most of which are known to be NAD- or NADP-dependent oxidoreductases Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query310
1x1q_A 418 Crystal Structure Of Tryptophan Synthase Beta Chain 2e-70
1wdw_B 385 Structural Basis Of Mutual Activation Of The Trypto 8e-67
1v8z_A 388 X-Ray Crystal Structure Of The Tryptophan Synthase 9e-67
2o2e_A 422 Mycobacterium Tuberculosis Tryptophan Synthase Beta 5e-65
1a50_B 396 Crystal Structure Of Wild-Type Tryptophan Synthase 1e-59
1ttp_B 397 Tryptophan Synthase (E.C.4.2.1.20) In The Presence 1e-59
1a5a_B 397 Cryo-Crystallography Of A True Substrate, Indole-3- 1e-59
1kfe_B 394 Crystal Structure Of Alphat183v Mutant Of Tryptopha 2e-59
1qop_B 396 Crystal Structure Of Wild-type Tryptophan Synthase 2e-59
3pr2_B 391 Tryptophan Synthase Indoline Quinonoid Structure Wi 2e-59
1k8x_B 397 Crystal Structure Of Alphat183v Mutant Of Tryptopha 2e-59
2dh5_A 397 Crystal Structure Of E. Coli Holo-Trpb Length = 397 2e-59
1k7x_B 396 Crystal Structure Of The Beta-Ser178pro Mutant Of T 3e-59
1ubs_B 397 Tryptophan Synthase (E.C.4.2.1.20) With A Mutation 5e-59
2tys_B 397 Crystal Structures Of Mutant (Betak87t) Tryptophan 5e-59
2j9y_B 397 Tryptophan Synthase Q114n Mutant In Complex With Co 7e-59
1qoq_B 396 Crystal Structure Of Wild-type Tryptophan Synthase 9e-59
1fuy_B 396 Crystal Structure Of Betaa169lBETAC170W DOUBLE MUTA 2e-58
2j9z_B 397 Tryptophan Synthase T110 Mutant Complex Length = 39 3e-58
>pdb|1X1Q|A Chain A, Crystal Structure Of Tryptophan Synthase Beta Chain From Thermus Thermophilus Hb8 Length = 418 Back     alignment and structure 
Iteration: 1

 Score =  262 bits (669), Expect = 2e-70,   Method: Compositional matrix adjust.
 Identities = 131/201 (65%), Positives = 155/201 (77%), Gaps = 6/201 (2%)
Query: 84  VPETLMYALSELESALHKLADDRDFQEELSGILRDYVGRETPLYFAERLTEHYRRPNGGG 143
           VPETL+ AL ELE+A  +   D  F EEL   LR + GR TPLY A+RL+E++     GG
Sbjct: 38  VPETLIPALEELEAAYREAKKDPAFLEELDHYLRQFAGRPTPLYHAKRLSEYW-----GG 92
Query: 144 PHIYLKREDLNHTGAHKINNAVGQALLAKRLGKTRIIAETGAGQHGVATATVCARFGLQC 203
             ++LKREDL HTGAHKINN +GQALLA+R GK R+IAETGAGQHGV+ ATV A FGL+C
Sbjct: 93  AQVFLKREDLLHTGAHKINNTLGQALLARRXGKRRVIAETGAGQHGVSVATVAALFGLEC 152
Query: 204 IVYMGAQDMERQALNVFRMRLLGAEVRAVHSGTATLKDATSEAIRDWVTNVETTHYILGS 263
           +VY G +D+ RQALNVFR +LLGAEVR V +G+ TLKDAT+EAIRDW+TNV TT YILGS
Sbjct: 153 VVYXGEEDVRRQALNVFRXKLLGAEVRPVAAGSRTLKDATNEAIRDWITNVRTTFYILGS 212
Query: 264 VAGPHPYPMMVRDFHATSIGE 284
           V GPHPYP  VRDF +  IGE
Sbjct: 213 VVGPHPYPXXVRDFQSV-IGE 232
>pdb|1WDW|B Chain B, Structural Basis Of Mutual Activation Of The Tryptophan Synthase A2b2 Complex From A Hyperthermophile, Pyrococcus Furiosus Length = 385 Back     alignment and structure
>pdb|1V8Z|A Chain A, X-Ray Crystal Structure Of The Tryptophan Synthase B2 Subunit From Hyperthermophile, Pyrococcus Furiosus Length = 388 Back     alignment and structure
>pdb|2O2E|A Chain A, Mycobacterium Tuberculosis Tryptophan Synthase Beta Subunit Dimer (Apoform) Length = 422 Back     alignment and structure
>pdb|1A50|B Chain B, Crystal Structure Of Wild-Type Tryptophan Synthase Complexed With 5- Fluoroindole Propanol Phosphate Length = 396 Back     alignment and structure
>pdb|1TTP|B Chain B, Tryptophan Synthase (E.C.4.2.1.20) In The Presence Of Cesium, Room Temperature Length = 397 Back     alignment and structure
>pdb|1A5A|B Chain B, Cryo-Crystallography Of A True Substrate, Indole-3-Glycerol Phosphate, Bound To A Mutant (Alphad60n) Tryptophan Synthase Alpha2beta2 Complex Reveals The Correct Orientation Of Active Site Alpha Glu 49 Length = 397 Back     alignment and structure
>pdb|1KFE|B Chain B, Crystal Structure Of Alphat183v Mutant Of Tryptophan Synthase From Salmonella Typhimurium With L-ser Bound To The Beta Site Length = 394 Back     alignment and structure
>pdb|1QOP|B Chain B, Crystal Structure Of Wild-type Tryptophan Synthase Complexed With Indole Propanol Phosphate Length = 396 Back     alignment and structure
>pdb|3PR2|B Chain B, Tryptophan Synthase Indoline Quinonoid Structure With F9 Inhibitor In Alpha Site Length = 391 Back     alignment and structure
>pdb|1K8X|B Chain B, Crystal Structure Of Alphat183v Mutant Of Tryptophan Synthase From Salmonella Typhimurium Length = 397 Back     alignment and structure
>pdb|2DH5|A Chain A, Crystal Structure Of E. Coli Holo-Trpb Length = 397 Back     alignment and structure
>pdb|1K7X|B Chain B, Crystal Structure Of The Beta-Ser178pro Mutant Of Tryptophan Synthase Length = 396 Back     alignment and structure
>pdb|1UBS|B Chain B, Tryptophan Synthase (E.C.4.2.1.20) With A Mutation Of Lys 87->thr In The B Subunit And In The Presence Of Ligand L-Serine Length = 397 Back     alignment and structure
>pdb|2TYS|B Chain B, Crystal Structures Of Mutant (Betak87t) Tryptophan Synthase Alpha2 Beta2 Complex With Ligands Bound To The Active Sites Of The Alpha And Beta Subunits Reveal Ligand-Induced Conformational Changes Length = 397 Back     alignment and structure
>pdb|2J9Y|B Chain B, Tryptophan Synthase Q114n Mutant In Complex With Compound Ii Length = 397 Back     alignment and structure
>pdb|1QOQ|B Chain B, Crystal Structure Of Wild-type Tryptophan Synthase Complexed With Indole Glycerol Phosphate Length = 396 Back     alignment and structure
>pdb|1FUY|B Chain B, Crystal Structure Of Betaa169lBETAC170W DOUBLE MUTANT OF TRYPTOPHAN Synthase Complexed With 5-Fluoro-Indole-Propanol Phosphate Length = 396 Back     alignment and structure
>pdb|2J9Z|B Chain B, Tryptophan Synthase T110 Mutant Complex Length = 397 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query310
1x1q_A 418 Tryptophan synthase beta chain; structural genomic 1e-163
1qop_B 396 Tryptophan synthase beta chain; lyase, carbon-oxyg 1e-159
2o2e_A 422 Tryptophan synthase beta chain; amino-acid biosynt 1e-159
1v8z_A 388 Tryptophan synthase beta chain 1; beta+alpha, rike 1e-157
1tzj_A 338 ACC deaminase, 1-aminocyclopropane-1-carboxylate d 1e-41
1f2d_A 341 1-aminocyclopropane-1-carboxylate deaminase; carbo 4e-27
4d9b_A 342 D-cysteine desulfhydrase; fold type II PLP-depende 1e-11
2zsj_A 352 Threonine synthase; PLP dependent enzyme, lyase; H 2e-09
2d1f_A 360 Threonine synthase; amino acid synthesis, pyridoxa 2e-09
1j0a_A 325 1-aminocyclopropane-1-carboxylate deaminase; PLP d 5e-09
1p5j_A 372 L-serine dehydratase; lyase; HET: PLP; 2.50A {Homo 1e-08
3aey_A 351 Threonine synthase; PLP, pyridoxal phosphate, lyas 2e-08
1e5x_A 486 Threonine synthase; threonine biosynthesis, PLP en 3e-08
2rkb_A 318 Serine dehydratase-like; PLP bound enzyme, enzyme 5e-08
3iau_A 366 Threonine deaminase; pyridoxal phosphate, amino-ac 1e-07
1tdj_A 514 Biosynthetic threonine deaminase; allostery, coope 2e-07
4d9i_A 398 Diaminopropionate ammonia-lyase; fold type II PLP- 1e-06
2gn0_A 342 Threonine dehydratase catabolic; TDCB, biodegradat 8e-06
1ve5_A 311 Threonine deaminase; riken structural genomics/Pro 4e-05
3pc3_A 527 CG1753, isoform A; CBS, synthase, PLP, heme, amino 7e-05
3ss7_X 442 D-serine dehydratase; type II fold, ALFA,beta-elim 2e-04
4aec_A 430 Cysteine synthase, mitochondrial; lyase, cysteine 4e-04
1z7w_A 322 Cysteine synthase; transferase; HET: PLP; 2.20A {A 5e-04
1ve1_A 304 O-acetylserine sulfhydrylase; PLP, transferase, ri 6e-04
1v71_A 323 Serine racemase, hypothetical protein C320.14 in c 9e-04
>1x1q_A Tryptophan synthase beta chain; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.50A {Thermus thermophilus} Length = 418 Back     alignment and structure
 Score =  461 bits (1188), Expect = e-163
 Identities = 144/236 (61%), Positives = 175/236 (74%), Gaps = 9/236 (3%)

Query: 55  PMEAKKESDPAPWQRPDVFGRFGRFGGKFVPETLMYALSELESALHKLADDRDFQEELSG 114
               +       +  PD  GRFG +GG++VPETL+ AL ELE+A  +   D  F EEL  
Sbjct: 9   AFRERSMLTLPDFPLPDARGRFGPYGGRYVPETLIPALEELEAAYREAKKDPAFLEELDH 68

Query: 115 ILRDYVGRETPLYFAERLTEHYRRPNGGGPHIYLKREDLNHTGAHKINNAVGQALLAKRL 174
            LR + GR TPLY A+RL+E++     GG  ++LKREDL HTGAHKINN +GQALLA+R+
Sbjct: 69  YLRQFAGRPTPLYHAKRLSEYW-----GGAQVFLKREDLLHTGAHKINNTLGQALLARRM 123

Query: 175 GKTRIIAETGAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEVRAVHS 234
           GK R+IAETGAGQHGV+ ATV A FGL+C+VYMG +D+ RQALNVFRM+LLGAEVR V +
Sbjct: 124 GKRRVIAETGAGQHGVSVATVAALFGLECVVYMGEEDVRRQALNVFRMKLLGAEVRPVAA 183

Query: 235 GTATLKDATSEAIRDWVTNVETTHYILGSVAGPHPYPMMVRDFHATSIGEMGWETR 290
           G+ TLKDAT+EAIRDW+TNV TT YILGSV GPHPYPMMVRDF +  IGE   E +
Sbjct: 184 GSRTLKDATNEAIRDWITNVRTTFYILGSVVGPHPYPMMVRDFQSV-IGE---EVK 235
>1qop_B Tryptophan synthase beta chain; lyase, carbon-oxygen lyase, tryptophan biosynthesis, pyridoxal phosphate; HET: IPL PLP; 1.4A {Salmonella typhimurium} SCOP: c.79.1.1 PDB: 1k7e_B* 1k7f_B* 1kfb_B* 1k3u_B* 1tjp_B* 1wbj_B* 2cli_B* 2clk_B* 2cll_B* 2j9x_B* 3cep_B* 1kfc_B* 1k8x_B* 1kfj_B* 1kfk_B* 2rh9_B* 2rhg_B* 2j9y_B* 1cw2_B* 1a5s_B* ... Length = 396 Back     alignment and structure
>2o2e_A Tryptophan synthase beta chain; amino-acid biosynthesis, tryptophan biosynthesis, structural genomics; 2.20A {Mycobacterium tuberculosis} PDB: 2o2j_A Length = 422 Back     alignment and structure
>1v8z_A Tryptophan synthase beta chain 1; beta+alpha, riken structural genomics/proteomics initiative, structural genomics, lyase; HET: PLP; 2.21A {Pyrococcus furiosus} SCOP: c.79.1.1 PDB: 1wdw_B* Length = 388 Back     alignment and structure
>1tzj_A ACC deaminase, 1-aminocyclopropane-1-carboxylate deaminase; substrate, PLP, crystal, complex, hydrolase; HET: PLP; 1.99A {Pseudomonas SP} SCOP: c.79.1.1 PDB: 1rqx_A* 1tz2_A* 1tyz_A* 1tzk_A* 1tzm_A* Length = 338 Back     alignment and structure
>1f2d_A 1-aminocyclopropane-1-carboxylate deaminase; carbon-carbon L open twisted alpha/beta, lyase; HET: PLP; 2.00A {Williopsis saturnus} SCOP: c.79.1.1 PDB: 1j0e_A* 1j0d_A* 1j0c_A* Length = 341 Back     alignment and structure
>4d9b_A D-cysteine desulfhydrase; fold type II PLP-dependent enzyme or tryptophan synthase BET like family, PLP dependent enzyme, lyase; HET: PMP; 1.67A {Salmonella typhimurium} PDB: 4d96_A* 4d9c_A* 4d9e_A* 4d9f_A* 4d97_A* 4d8w_A* 4d8u_A* 4d8t_A* 4d92_A* 4d99_A* Length = 342 Back     alignment and structure
>2zsj_A Threonine synthase; PLP dependent enzyme, lyase; HET: PLP; 1.80A {Aquifex aeolicus} Length = 352 Back     alignment and structure
>2d1f_A Threonine synthase; amino acid synthesis, pyridoxal-5'-phosphate, PLP, lyase; HET: PLP; 2.50A {Mycobacterium tuberculosis} Length = 360 Back     alignment and structure
>1j0a_A 1-aminocyclopropane-1-carboxylate deaminase; PLP dependent, lyase; HET: PLP; 2.50A {Pyrococcus horikoshii} SCOP: c.79.1.1 PDB: 1j0b_A* Length = 325 Back     alignment and structure
>1p5j_A L-serine dehydratase; lyase; HET: PLP; 2.50A {Homo sapiens} SCOP: c.79.1.1 PDB: 1pwh_A* 1pwe_A* Length = 372 Back     alignment and structure
>3aey_A Threonine synthase; PLP, pyridoxal phosphate, lyase; 1.92A {Thermus thermophilus} PDB: 1uin_A* 1uim_A* 3aex_A* 1v7c_A Length = 351 Back     alignment and structure
>1e5x_A Threonine synthase; threonine biosynthesis, PLP enzyme, S-adenosyl-methionine, allostery; 2.25A {Arabidopsis thaliana} SCOP: c.79.1.1 PDB: 2c2b_A* 2c2g_A* Length = 486 Back     alignment and structure
>2rkb_A Serine dehydratase-like; PLP bound enzyme, enzyme found in human cells, lyase, pyridoxal phosphate; HET: PLP; 2.80A {Homo sapiens} Length = 318 Back     alignment and structure
>3iau_A Threonine deaminase; pyridoxal phosphate, amino-acid biosynthesis, defensive PROT jasmonic acid pathway, jasmonic acid,structural genomics; HET: LLP 15P; 2.35A {Solanum lycopersicum} Length = 366 Back     alignment and structure
>1tdj_A Biosynthetic threonine deaminase; allostery, cooperative, tetramer, regulation, pyridoxal PHOS isoleucine biosynthesis; HET: PLP; 2.80A {Escherichia coli} SCOP: c.79.1.1 d.58.18.2 d.58.18.2 Length = 514 Back     alignment and structure
>4d9i_A Diaminopropionate ammonia-lyase; fold type II PLP-dependent enzyme, tryptophan synthase beta like PLP-dependent enzymes superfamily; HET: IT1; 2.00A {Escherichia coli} PDB: 4d9g_A* 4d9n_A* 4d9k_A* 4d9m_A* Length = 398 Back     alignment and structure
>1ve5_A Threonine deaminase; riken structural genomics/Pro initiative, RSGI, structural genomics, lyase; HET: PLP; 2.15A {Thermus thermophilus} SCOP: c.79.1.1 Length = 311 Back     alignment and structure
>3pc3_A CG1753, isoform A; CBS, synthase, PLP, heme, aminoacrylate, lyase; HET: HEM P1T; 1.55A {Drosophila melanogaster} PDB: 3pc2_A* 3pc4_A* Length = 527 Back     alignment and structure
>3ss7_X D-serine dehydratase; type II fold, ALFA,beta-elimination, P 5'-phosphate, lyase; HET: PLP; 1.55A {Escherichia coli} PDB: 3ss9_X* 3r0x_A* 3r0z_A Length = 442 Back     alignment and structure
>4aec_A Cysteine synthase, mitochondrial; lyase, cysteine synthesis, assimilatory sulfate reduction, S plant inorganic sulfur uptake; HET: PLP; 2.40A {Arabidopsis thaliana} Length = 430 Back     alignment and structure
>1z7w_A Cysteine synthase; transferase; HET: PLP; 2.20A {Arabidopsis thaliana} SCOP: c.79.1.1 PDB: 1z7y_A* 2isq_A* Length = 322 Back     alignment and structure
>1ve1_A O-acetylserine sulfhydrylase; PLP, transferase, riken structural genomics/proteomics initi RSGI, structural genomics; HET: PLP; 1.45A {Thermus thermophilus} SCOP: c.79.1.1 PDB: 2eco_A* 2ecq_A* 2efy_A* Length = 304 Back     alignment and structure
>1v71_A Serine racemase, hypothetical protein C320.14 in chromosome III; dimer, PLP, isomerase; HET: PLP; 1.70A {Schizosaccharomyces pombe} SCOP: c.79.1.1 PDB: 1wtc_A* 2zpu_A* 2zr8_A* Length = 323 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query310
2o2e_A 422 Tryptophan synthase beta chain; amino-acid biosynt 100.0
1x1q_A 418 Tryptophan synthase beta chain; structural genomic 100.0
1qop_B 396 Tryptophan synthase beta chain; lyase, carbon-oxyg 100.0
1v8z_A 388 Tryptophan synthase beta chain 1; beta+alpha, rike 100.0
1wkv_A389 Cysteine synthase; homodimer, open alpha/beta fold 100.0
3vc3_A 344 Beta-cyanoalnine synthase; beta-cyanoalanine synth 100.0
3l6b_A 346 Serine racemase; pyridoxal phosphate, PLP, isomera 100.0
2gn0_A 342 Threonine dehydratase catabolic; TDCB, biodegradat 100.0
3tbh_A 334 O-acetyl serine sulfhydrylase; cysteine synthase, 99.97
3ss7_X 442 D-serine dehydratase; type II fold, ALFA,beta-elim 99.97
3dwg_A 325 Cysteine synthase B; sulfur carrier protein comple 99.97
1v71_A 323 Serine racemase, hypothetical protein C320.14 in c 99.97
1ve5_A 311 Threonine deaminase; riken structural genomics/Pro 99.97
2v03_A303 Cysteine synthase B; pyridoxal phosphate, cysteine 99.97
4aec_A 430 Cysteine synthase, mitochondrial; lyase, cysteine 99.97
1z7w_A 322 Cysteine synthase; transferase; HET: PLP; 2.20A {A 99.97
1ve1_A304 O-acetylserine sulfhydrylase; PLP, transferase, ri 99.97
2q3b_A 313 Cysteine synthase A; pyridoxal-5'-phosphate, sulph 99.97
1y7l_A 316 O-acetylserine sulfhydrylase, O-acetylserine (thio 99.97
2egu_A 308 Cysteine synthase; O-acetylserine sulfhydrase, str 99.97
2pqm_A 343 Cysteine synthase; OASS, PLP, lyase; HET: PLP; 1.8 99.97
4h27_A 364 L-serine dehydratase/L-threonine deaminase; PLP de 99.97
1p5j_A 372 L-serine dehydratase; lyase; HET: PLP; 2.50A {Homo 99.97
2d1f_A 360 Threonine synthase; amino acid synthesis, pyridoxa 99.96
3iau_A 366 Threonine deaminase; pyridoxal phosphate, amino-ac 99.96
2rkb_A 318 Serine dehydratase-like; PLP bound enzyme, enzyme 99.96
1tdj_A 514 Biosynthetic threonine deaminase; allostery, coope 99.96
3aey_A 351 Threonine synthase; PLP, pyridoxal phosphate, lyas 99.96
2zsj_A 352 Threonine synthase; PLP dependent enzyme, lyase; H 99.96
3pc3_A 527 CG1753, isoform A; CBS, synthase, PLP, heme, amino 99.96
1jbq_A 435 B, cystathionine beta-synthase, serine sulfhydrase 99.96
1o58_A303 O-acetylserine sulfhydrylase; TM0665, structural g 99.96
4d9b_A 342 D-cysteine desulfhydrase; fold type II PLP-depende 99.96
4d9i_A 398 Diaminopropionate ammonia-lyase; fold type II PLP- 99.96
1f2d_A 341 1-aminocyclopropane-1-carboxylate deaminase; carbo 99.95
1j0a_A 325 1-aminocyclopropane-1-carboxylate deaminase; PLP d 99.95
1vb3_A 428 Threonine synthase; PLP-dependent enzyme, lyase; H 99.95
1tzj_A 338 ACC deaminase, 1-aminocyclopropane-1-carboxylate d 99.95
1e5x_A 486 Threonine synthase; threonine biosynthesis, PLP en 99.95
4f4f_A 468 Threonine synthase; structural genomics, niaid, na 99.92
3v7n_A 487 Threonine synthase; ssgcid, structural genomics, s 99.92
1kl7_A 514 Threonine synthase; threonine synthesis, pyridoxal 99.89
1vp8_A201 Hypothetical protein AF0103; putative pyruvate kin 91.89
3pi7_A349 NADH oxidoreductase; groes-like fold, NAD(P)-bindi 90.54
3iup_A379 Putative NADPH:quinone oxidoreductase; YP_296108.1 85.59
3uog_A363 Alcohol dehydrogenase; structural genomics, protei 83.58
2hcy_A347 Alcohol dehydrogenase 1; tetramer of asymmetric di 82.93
1t57_A206 Conserved protein MTH1675; structural genomics, FM 82.48
3qwb_A334 Probable quinone oxidoreductase; rossmann fold, qu 82.34
4a2c_A346 Galactitol-1-phosphate 5-dehydrogenase; oxidoreduc 82.28
3awd_A 260 GOX2181, putative polyol dehydrogenase; oxidoreduc 81.89
3qiv_A 253 Short-chain dehydrogenase or 3-oxoacyl-[acyl-CARR 81.48
4iiu_A 267 3-oxoacyl-[acyl-carrier protein] reductase; struct 81.36
3lyl_A 247 3-oxoacyl-(acyl-carrier-protein) reductase; alpha 81.27
3osu_A 246 3-oxoacyl-[acyl-carrier-protein] reductase; struct 80.71
3gqv_A371 Enoyl reductase; medium-chain reductase (MDR super 80.58
4iin_A 271 3-ketoacyl-acyl carrier protein reductase (FABG); 80.56
4b7c_A336 Probable oxidoreductase; NADP cofactor, rossmann f 80.47
3h7a_A 252 Short chain dehydrogenase; oxidoreductase, PSI-2, 80.43
4e3z_A 272 Putative oxidoreductase protein; PSI-biology, stru 80.36
3two_A348 Mannitol dehydrogenase; cinnamyl-alcohol dehydroge 80.11
1yb1_A 272 17-beta-hydroxysteroid dehydrogenase type XI; shor 80.07
>2o2e_A Tryptophan synthase beta chain; amino-acid biosynthesis, tryptophan biosynthesis, structural genomics; 2.20A {Mycobacterium tuberculosis} PDB: 2o2j_A Back     alignment and structure
Probab=100.00  E-value=1.7e-46  Score=369.01  Aligned_cols=234  Identities=53%  Similarity=0.852  Sum_probs=192.0

Q ss_pred             CCCCCCCCccC---CCccccccchhhhHHHHHHHHHHhcCChhHHHHHHHHHhhhcCCCCCEEEccccchhhcCCCCCCC
Q 021613           68 QRPDVFGRFGR---FGGKFVPETLMYALSELESALHKLADDRDFQEELSGILRDYVGRETPLYFAERLTEHYRRPNGGGP  144 (310)
Q Consensus        68 ~~~~~~~~~g~---~GG~~vPe~l~~~~~~i~~a~~~~~~d~~f~~el~~~l~~~vg~~TPL~~~~~Ls~~~~~~~~~g~  144 (310)
                      ..||.+|+||.   |||+||||++++++++|+++|..+..|++|+++++..+.+++|+||||+++++|++.+     ++.
T Consensus        23 ~~~~~~~~~~~~~~~gg~~~pe~~~~~~~~i~~a~~~~~~~~~~~~~~~~~~~~~~g~~TPL~~~~~Ls~~~-----gg~   97 (422)
T 2o2e_A           23 HDPDSGGHFGGPSGWGGRYVPEALMAVIEEVTAAYQKERVSQDFLDDLDRLQANYAGRPSPLYEATRLSQHA-----GSA   97 (422)
T ss_dssp             ------------------CCCGGGHHHHHHHHHHHHHHHTSTHHHHHHHHHTTTTSSCSCCEEECGGGGGGT-----TTC
T ss_pred             cCCCcCCCCCCCCCcCCccCCHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhCCCCCCeEEChhhHhhc-----CCC
Confidence            45889999999   9999999999999999999999999999999999999999999999999999999987     368


Q ss_pred             eEEEEecCCCCCCChHHHHHHHHHHHhhhcCCCeEEEecCcchHHHHHHHHHHHcCCeEEEEeCCCchhchHHHHHHHHH
Q 021613          145 HIYLKREDLNHTGAHKINNAVGQALLAKRLGKTRIIAETGAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMRL  224 (310)
Q Consensus       145 ~I~lK~E~lnpTGSfK~Rga~~~l~~a~~~g~~~~Vv~aSsGNhg~AlA~aaa~~Gi~~~Ivmp~~~~~~~~~kv~~~~~  224 (310)
                      +||+|+|++|||||||+|+++++++.+++.|++++|+++|+||||+|+|++|+++|++|+||||+.+.+++..|+.+|+.
T Consensus        98 ~i~lK~E~lnptGSfK~R~a~~~~~~a~~~g~~~vI~~~ssGNhG~A~A~aaa~~G~~~~I~mp~~~~~~q~~kv~~~~~  177 (422)
T 2o2e_A           98 RIFLKREDLNHTGSHKINNVLGQALLARRMGKTRVIAETGAGQHGVATATACALLGLDCVIYMGGIDTARQALNVARMRL  177 (422)
T ss_dssp             EEEEECGGGCCSSTTHHHHHHHHHHHHHHTTCCEEEEEESSSHHHHHHHHHHHHHTCEEEEEEEHHHHHHSHHHHHHHHH
T ss_pred             eEEEEEcCCCCCCcHHHHHHHHHHHHHHHcCCCeEEEecCccHHHHHHHHHHHHcCCcEEEEeCCCcchhhHHHHHHHHH
Confidence            99999999999999999999999999988898888888999999999999999999999999998765555789999999


Q ss_pred             CCCEEEEEcCCCCCHHHHHHHHHHHHHHccCCceeecCCCCCCCChhhhh----------------------cccceecc
Q 021613          225 LGAEVRAVHSGTATLKDATSEAIRDWVTNVETTHYILGSVAGPHPYPMMV----------------------RDFHATSI  282 (310)
Q Consensus       225 ~GA~Vv~v~~~~~~~~da~~~a~~~~~~~~~~~~Yi~gs~~~~hp~~~iv----------------------~d~~~v~v  282 (310)
                      +||+|+.++.+.++++++++++.+.|.++..+.+|++++..++|||+.++                      +|++++|+
T Consensus       178 ~GA~Vv~v~~~~~~~~da~~~a~~~~~~~~~~~~yi~~s~~g~~p~~~~v~~~q~t~g~Ei~~Ql~~~~~~~pD~vvvpv  257 (422)
T 2o2e_A          178 LGAEVVAVQTGSKTLKDAINEAFRDWVANADNTYYCFGTAAGPHPFPTMVRDFQRIIGMEARVQIQGQAGRLPDAVVACV  257 (422)
T ss_dssp             TTCEEEEECSTTSCHHHHHHHHHHHHHHHTTTEEECCCCSSSCCCCHHHHHHHTTHHHHHHHHHHHHHSSSCCSEEEEEG
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHHHHhcCCCcEEEeCCccCCCCcHHHHHHHHHHHHHHHHHHHHHhhCCCCCEEEEcc
Confidence            99999999875568999999888888887667889988887889886432                      46678889


Q ss_pred             chHHHHHHHHHHHHHhCC--ccccccC
Q 021613          283 GEMGWETRCADCMRWWWF--KCHGSLP  307 (310)
Q Consensus       283 GT~G~e~gi~q~l~~~~~--~~~~~~P  307 (310)
                      |+||+.+|+...+.+ ++  .+++..|
T Consensus       258 G~GG~~~Gi~~~~~~-~p~v~vigVe~  283 (422)
T 2o2e_A          258 GGGSNAIGIFHAFLD-DPGVRLVGFEA  283 (422)
T ss_dssp             GGHHHHHTTSGGGTT-CTTCEEEEEEE
T ss_pred             CCchhHHHHHHHHhc-CCCCeEEEEec
Confidence            999999997555543 22  5555544
>1x1q_A Tryptophan synthase beta chain; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.50A {Thermus thermophilus} Back     alignment and structure
>1qop_B Tryptophan synthase beta chain; lyase, carbon-oxygen lyase, tryptophan biosynthesis, pyridoxal phosphate; HET: IPL PLP; 1.4A {Salmonella typhimurium} SCOP: c.79.1.1 PDB: 1k7e_B* 1k7f_B* 1kfb_B* 1k3u_B* 1tjp_B* 1wbj_B* 2cli_B* 2clk_B* 2cll_B* 2j9x_B* 3cep_B* 1kfc_B* 1k8x_B* 1kfj_B* 1kfk_B* 2rh9_B* 2rhg_B* 2j9y_B* 1cw2_B* 1a5s_B* ... Back     alignment and structure
>1v8z_A Tryptophan synthase beta chain 1; beta+alpha, riken structural genomics/proteomics initiative, structural genomics, lyase; HET: PLP; 2.21A {Pyrococcus furiosus} SCOP: c.79.1.1 PDB: 1wdw_B* Back     alignment and structure
>1wkv_A Cysteine synthase; homodimer, open alpha/beta folding, transferase; HET: PLP; 2.00A {Aeropyrum pernix} SCOP: c.79.1.1 Back     alignment and structure
>3vc3_A Beta-cyanoalnine synthase; beta-cyanoalanine synthase, transferase; HET: C6P; 1.77A {Glycine max} PDB: 3vbe_A* Back     alignment and structure
>3l6b_A Serine racemase; pyridoxal phosphate, PLP, isomerase; HET: PLP; 1.50A {Homo sapiens} SCOP: c.79.1.0 PDB: 3l6r_A* 3hmk_A* 3l6c_A* Back     alignment and structure
>3tbh_A O-acetyl serine sulfhydrylase; cysteine synthase, type II PLP dependent enzyme, serine ACET transferase; HET: LLP; 1.68A {Leishmania donovani} PDB: 3spx_A* 3t4p_A* 4air_A* Back     alignment and structure
>3ss7_X D-serine dehydratase; type II fold, ALFA,beta-elimination, P 5'-phosphate, lyase; HET: PLP; 1.55A {Escherichia coli} PDB: 3ss9_X* 3r0x_A* 3r0z_A Back     alignment and structure
>3dwg_A Cysteine synthase B; sulfur carrier protein complex, beta-grAsp fold, amino-acid biosynthesis; HET: PLP; 1.53A {Mycobacterium tuberculosis} SCOP: c.79.1.0 PDB: 3fgp_A* 3dki_A* 3dwi_A* Back     alignment and structure
>1v71_A Serine racemase, hypothetical protein C320.14 in chromosome III; dimer, PLP, isomerase; HET: PLP; 1.70A {Schizosaccharomyces pombe} SCOP: c.79.1.1 PDB: 1wtc_A* 2zpu_A* 2zr8_A* Back     alignment and structure
>1ve5_A Threonine deaminase; riken structural genomics/Pro initiative, RSGI, structural genomics, lyase; HET: PLP; 2.15A {Thermus thermophilus} SCOP: c.79.1.1 Back     alignment and structure
>2v03_A Cysteine synthase B; pyridoxal phosphate, cysteine biosynthesis, transferase, ENZ kinetics, enzymatic sythesis of novel compounds; HET: LLP CIT; 1.33A {Escherichia coli} PDB: 2bhs_A* 2bht_A* 2jc3_A* Back     alignment and structure
>4aec_A Cysteine synthase, mitochondrial; lyase, cysteine synthesis, assimilatory sulfate reduction, S plant inorganic sulfur uptake; HET: PLP; 2.40A {Arabidopsis thaliana} Back     alignment and structure
>1z7w_A Cysteine synthase; transferase; HET: PLP; 2.20A {Arabidopsis thaliana} SCOP: c.79.1.1 PDB: 1z7y_A* 2isq_A* Back     alignment and structure
>1ve1_A O-acetylserine sulfhydrylase; PLP, transferase, riken structural genomics/proteomics initi RSGI, structural genomics; HET: PLP; 1.45A {Thermus thermophilus} SCOP: c.79.1.1 PDB: 2eco_A* 2ecq_A* 2efy_A* Back     alignment and structure
>2q3b_A Cysteine synthase A; pyridoxal-5'-phosphate, sulphur metabolism, cysteine biosynthesis, transferase; HET: LLP; 1.80A {Mycobacterium tuberculosis} PDB: 2q3c_A* 2q3d_A* 3rr2_A Back     alignment and structure
>1y7l_A O-acetylserine sulfhydrylase, O-acetylserine (thiol)-lyase; X-RAY crystallography, sulfhydrylase; HET: LLP; 1.55A {Haemophilus influenzae} SCOP: c.79.1.1 PDB: 3iqg_X* 3iqh_X* 3iqi_X* 1fcj_A* 1oas_A* 1d6s_A* Back     alignment and structure
>2egu_A Cysteine synthase; O-acetylserine sulfhydrase, structural genomics, NPPSFA, NAT project on protein structural and functional analyses; 1.90A {Geobacillus kaustophilus} Back     alignment and structure
>2pqm_A Cysteine synthase; OASS, PLP, lyase; HET: PLP; 1.86A {Entamoeba histolytica} PDB: 3bm5_A* Back     alignment and structure
>4h27_A L-serine dehydratase/L-threonine deaminase; PLP dependent typeii, PLP binding, liver, lyase; HET: LLP; 1.30A {Homo sapiens} PDB: 1p5j_A* 1pwh_A* 1pwe_A* Back     alignment and structure
>1p5j_A L-serine dehydratase; lyase; HET: PLP; 2.50A {Homo sapiens} SCOP: c.79.1.1 PDB: 1pwh_A* 1pwe_A* Back     alignment and structure
>2d1f_A Threonine synthase; amino acid synthesis, pyridoxal-5'-phosphate, PLP, lyase; HET: PLP; 2.50A {Mycobacterium tuberculosis} Back     alignment and structure
>3iau_A Threonine deaminase; pyridoxal phosphate, amino-acid biosynthesis, defensive PROT jasmonic acid pathway, jasmonic acid,structural genomics; HET: LLP 15P; 2.35A {Solanum lycopersicum} Back     alignment and structure
>2rkb_A Serine dehydratase-like; PLP bound enzyme, enzyme found in human cells, lyase, pyridoxal phosphate; HET: PLP; 2.80A {Homo sapiens} Back     alignment and structure
>1tdj_A Biosynthetic threonine deaminase; allostery, cooperative, tetramer, regulation, pyridoxal PHOS isoleucine biosynthesis; HET: PLP; 2.80A {Escherichia coli} SCOP: c.79.1.1 d.58.18.2 d.58.18.2 Back     alignment and structure
>3aey_A Threonine synthase; PLP, pyridoxal phosphate, lyase; 1.92A {Thermus thermophilus} PDB: 1uin_A* 1uim_A* 3aex_A* 1v7c_A Back     alignment and structure
>2zsj_A Threonine synthase; PLP dependent enzyme, lyase; HET: PLP; 1.80A {Aquifex aeolicus} Back     alignment and structure
>3pc3_A CG1753, isoform A; CBS, synthase, PLP, heme, aminoacrylate, lyase; HET: HEM P1T; 1.55A {Drosophila melanogaster} PDB: 3pc2_A* 3pc4_A* Back     alignment and structure
>1jbq_A B, cystathionine beta-synthase, serine sulfhydrase; fold type II of PLP enzymes, lyase; HET: HEM PLP; 2.60A {Homo sapiens} SCOP: c.79.1.1 PDB: 1m54_A* Back     alignment and structure
>1o58_A O-acetylserine sulfhydrylase; TM0665, structural genomics, J protein structure initiative, joint center for structural G transferase; 1.80A {Thermotoga maritima} SCOP: c.79.1.1 PDB: 3fca_A* Back     alignment and structure
>4d9b_A D-cysteine desulfhydrase; fold type II PLP-dependent enzyme or tryptophan synthase BET like family, PLP dependent enzyme, lyase; HET: PMP; 1.67A {Salmonella typhimurium} PDB: 4d96_A* 4d9c_A* 4d9e_A* 4d9f_A* 4d97_A* 4d8w_A* 4d8u_A* 4d8t_A* 4d92_A* 4d99_A* Back     alignment and structure
>4d9i_A Diaminopropionate ammonia-lyase; fold type II PLP-dependent enzyme, tryptophan synthase beta like PLP-dependent enzymes superfamily; HET: IT1; 2.00A {Escherichia coli} PDB: 4d9g_A* 4d9n_A* 4d9k_A* 4d9m_A* Back     alignment and structure
>1f2d_A 1-aminocyclopropane-1-carboxylate deaminase; carbon-carbon L open twisted alpha/beta, lyase; HET: PLP; 2.00A {Williopsis saturnus} SCOP: c.79.1.1 PDB: 1j0e_A* 1j0d_A* 1j0c_A* Back     alignment and structure
>1j0a_A 1-aminocyclopropane-1-carboxylate deaminase; PLP dependent, lyase; HET: PLP; 2.50A {Pyrococcus horikoshii} SCOP: c.79.1.1 PDB: 1j0b_A* Back     alignment and structure
>1vb3_A Threonine synthase; PLP-dependent enzyme, lyase; HET: KPA; 2.20A {Escherichia coli} SCOP: c.79.1.1 Back     alignment and structure
>1tzj_A ACC deaminase, 1-aminocyclopropane-1-carboxylate deaminase; substrate, PLP, crystal, complex, hydrolase; HET: PLP; 1.99A {Pseudomonas SP} SCOP: c.79.1.1 PDB: 1rqx_A* 1tz2_A* 1tyz_A* 1tzk_A* 1tzm_A* Back     alignment and structure
>1e5x_A Threonine synthase; threonine biosynthesis, PLP enzyme, S-adenosyl-methionine, allostery; 2.25A {Arabidopsis thaliana} SCOP: c.79.1.1 PDB: 2c2b_A* 2c2g_A* Back     alignment and structure
>4f4f_A Threonine synthase; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: PLP; 1.90A {Brucella melitensis BV} Back     alignment and structure
>3v7n_A Threonine synthase; ssgcid, structural genomics, seattle structural genomics CEN infectious disease, lyase; 1.40A {Burkholderia thailandensis} Back     alignment and structure
>1kl7_A Threonine synthase; threonine synthesis, pyridoxal 5-phosphate, beta-family, MON lyase; HET: PLP; 2.70A {Saccharomyces cerevisiae} SCOP: c.79.1.1 Back     alignment and structure
>1vp8_A Hypothetical protein AF0103; putative pyruvate kinase, structural genomics, joint center structural genomics, JCSG; HET: MSE FMN; 1.30A {Archaeoglobus fulgidus} SCOP: c.49.1.2 Back     alignment and structure
>3pi7_A NADH oxidoreductase; groes-like fold, NAD(P)-binding rossmann fold, structural GE joint center for structural genomics, JCSG; HET: MSE; 1.71A {Mesorhizobium loti} Back     alignment and structure
>3iup_A Putative NADPH:quinone oxidoreductase; YP_296108.1, structur genomics, joint center for structural genomics, JCSG, prote structure initiative; HET: MSE NDP; 1.70A {Ralstonia eutropha} Back     alignment and structure
>3uog_A Alcohol dehydrogenase; structural genomics, protein structure initiative, PSI-biolo YORK structural genomics research consortium; 2.20A {Sinorhizobium meliloti 1021} Back     alignment and structure
>2hcy_A Alcohol dehydrogenase 1; tetramer of asymmetric dimers, zinc coordination, intramolec disulfide bonds, oxidoreductase; HET: 8ID; 2.44A {Saccharomyces cerevisiae} Back     alignment and structure
>1t57_A Conserved protein MTH1675; structural genomics, FMN; HET: FMN; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.49.1.2 Back     alignment and structure
>3qwb_A Probable quinone oxidoreductase; rossmann fold, quinone oxidoreductases, NADPH, cytoplasm and oxidoreductase; HET: NDP; 1.59A {Saccharomyces cerevisiae} PDB: 3qwa_A* Back     alignment and structure
>4a2c_A Galactitol-1-phosphate 5-dehydrogenase; oxidoreductase, metal binding-site; 1.87A {Escherichia coli} Back     alignment and structure
>3awd_A GOX2181, putative polyol dehydrogenase; oxidoreductase; 1.80A {Gluconobacter oxydans} Back     alignment and structure
>3qiv_A Short-chain dehydrogenase or 3-oxoacyl-[acyl-CARR protein] reductase; structural genomics; 2.25A {Mycobacterium avium subsp} Back     alignment and structure
>4iiu_A 3-oxoacyl-[acyl-carrier protein] reductase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAP; 2.10A {Escherichia coli} PDB: 4iiv_A* Back     alignment and structure
>3lyl_A 3-oxoacyl-(acyl-carrier-protein) reductase; alpha and beta protein, NAD(P)-binding rossmann fold, csgid, oxidoreductase; 1.95A {Francisella tularensis subsp} SCOP: c.2.1.2 Back     alignment and structure
>3osu_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, csgid, center for structural genomics O infectious diseases; 1.90A {Staphylococcus aureus subsp} SCOP: c.2.1.0 PDB: 3sj7_A* Back     alignment and structure
>3gqv_A Enoyl reductase; medium-chain reductase (MDR superfamily), rossmann fold, NAD binding, oxidoreductase; HET: NAP; 1.74A {Aspergillus terreus} PDB: 3b6z_A* 3b70_A* Back     alignment and structure
>4iin_A 3-ketoacyl-acyl carrier protein reductase (FABG); structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD; 2.40A {Helicobacter pylori} PDB: 4ijk_A Back     alignment and structure
>4b7c_A Probable oxidoreductase; NADP cofactor, rossmann fold; HET: MES; 2.10A {Pseudomonas aeruginosa PA01} PDB: 4b7x_A* Back     alignment and structure
>3h7a_A Short chain dehydrogenase; oxidoreductase, PSI-2, NYSGXRC, structural genomics, protein structure initiative; 1.87A {Rhodopseudomonas palustris} Back     alignment and structure
>4e3z_A Putative oxidoreductase protein; PSI-biology, structural genomics, protein structure initiati nysgrc,oxidoreductase; 2.00A {Rhizobium etli} Back     alignment and structure
>3two_A Mannitol dehydrogenase; cinnamyl-alcohol dehydrogenase, NADP(H) oxidoreductase; HET: NDP; 2.18A {Helicobacter pylori} Back     alignment and structure
>1yb1_A 17-beta-hydroxysteroid dehydrogenase type XI; short chain dehydrogenase, HUM structural genomics, structural genomics consortium, SGC; HET: AE2; 1.95A {Homo sapiens} SCOP: c.2.1.2 Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 310
d1qopb_ 390 c.79.1.1 (B:) Tryptophan synthase, beta-subunit {S 5e-70
d1v8za1 386 c.79.1.1 (A:1-386) Tryptophan synthase, beta-subun 5e-68
d1tyza_ 338 c.79.1.1 (A:) 1-aminocyclopropane-1-carboxylate de 1e-25
d1f2da_ 341 c.79.1.1 (A:) 1-aminocyclopropane-1-carboxylate de 4e-24
d1o58a_ 293 c.79.1.1 (A:) O-acetylserine sulfhydrylase (Cystei 4e-16
d1e5xa_ 477 c.79.1.1 (A:) Threonine synthase {Mouse-ear cress 6e-16
d1j0aa_ 325 c.79.1.1 (A:) 1-aminocyclopropane-1-carboxylate de 7e-16
d1jbqa_ 355 c.79.1.1 (A:) Cystathionine beta-synthase {Human ( 2e-15
d1v71a1 318 c.79.1.1 (A:6-323) Hypothetical protein C320.14 (S 7e-15
d1tdja1 331 c.79.1.1 (A:5-335) Threonine deaminase {Escherichi 7e-15
d1wkva1 382 c.79.1.1 (A:2-383) O-acetylserine sulfhydrylase (C 2e-14
d1p5ja_ 319 c.79.1.1 (A:) L-serine dehydratase {Human (Homo sa 5e-14
d1ve5a1 310 c.79.1.1 (A:2-311) Threonine deaminase {Thermus th 4e-13
d2bhsa1292 c.79.1.1 (A:2-293) O-acetylserine sulfhydrylase (C 6e-13
d1v7ca_ 351 c.79.1.1 (A:) Threonine synthase {Thermus thermoph 1e-11
d1ve1a1 302 c.79.1.1 (A:1-302) O-acetylserine sulfhydrylase (C 1e-11
d1z7wa1 320 c.79.1.1 (A:3-322) O-acetylserine sulfhydrylase (C 2e-10
d1fcja_ 302 c.79.1.1 (A:) O-acetylserine sulfhydrylase (Cystei 2e-09
d1y7la1 310 c.79.1.1 (A:2-311) O-acetylserine sulfhydrylase (C 5e-09
>d1qopb_ c.79.1.1 (B:) Tryptophan synthase, beta-subunit {Salmonella typhimurium [TaxId: 90371]} Length = 390 Back     information, alignment and structure

class: Alpha and beta proteins (a/b)
fold: Tryptophan synthase beta subunit-like PLP-dependent enzymes
superfamily: Tryptophan synthase beta subunit-like PLP-dependent enzymes
family: Tryptophan synthase beta subunit-like PLP-dependent enzymes
domain: Tryptophan synthase, beta-subunit
species: Salmonella typhimurium [TaxId: 90371]

 Score =  220 bits (561), Expect = 5e-70
 Identities = 116/224 (51%), Positives = 149/224 (66%), Gaps = 6/224 (2%)

Query: 74  GRFGRFGGKFVPETLMYALSELESALHKLADDRDFQEELSGILRDYVGRETPLYFAERLT 133
             FG FGG +VP+ LM AL++LE A      D +FQ + + +L++Y GR T L   + +T
Sbjct: 6   PYFGEFGGMYVPQILMPALNQLEEAFVSAQKDPEFQAQFADLLKNYAGRPTALTKCQNIT 65

Query: 134 EHYRRPNGGGPHIYLKREDLNHTGAHKINNAVGQALLAKRLGKTRIIAETGAGQHGVATA 193
                       +YLKREDL H GAHK N  +GQALLAKR+GK+ IIAETGAGQHGVA+A
Sbjct: 66  AGT------RTTLYLKREDLLHGGAHKTNQVLGQALLAKRMGKSEIIAETGAGQHGVASA 119

Query: 194 TVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEVRAVHSGTATLKDATSEAIRDWVTN 253
              A  GL+C +YMGA+D+ERQ+ NVFRMRL+GAEV  VHSG+ATLKDA +EA+RDW  +
Sbjct: 120 LASALLGLKCRIYMGAKDVERQSPNVFRMRLMGAEVIPVHSGSATLKDACNEALRDWSGS 179

Query: 254 VETTHYILGSVAGPHPYPMMVRDFHATSIGEMGWETRCADCMRW 297
            ET HY+LG+ AGPHPYP +VR+F      E   +    +    
Sbjct: 180 YETAHYMLGTAAGPHPYPTIVREFQRMIGEETKAQILDKEGRLP 223
>d1v8za1 c.79.1.1 (A:1-386) Tryptophan synthase, beta-subunit {Archaeon Pyrococcus furiosus [TaxId: 2261]} Length = 386 Back     information, alignment and structure
>d1tyza_ c.79.1.1 (A:) 1-aminocyclopropane-1-carboxylate deaminase {Pseudomonas sp., strain ACP [TaxId: 306]} Length = 338 Back     information, alignment and structure
>d1f2da_ c.79.1.1 (A:) 1-aminocyclopropane-1-carboxylate deaminase {Yeast (Hansenula saturnus) [TaxId: 4906]} Length = 341 Back     information, alignment and structure
>d1o58a_ c.79.1.1 (A:) O-acetylserine sulfhydrylase (Cysteine synthase) {Thermotoga maritima [TaxId: 2336]} Length = 293 Back     information, alignment and structure
>d1e5xa_ c.79.1.1 (A:) Threonine synthase {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 477 Back     information, alignment and structure
>d1j0aa_ c.79.1.1 (A:) 1-aminocyclopropane-1-carboxylate deaminase {Archaeon Pyrococcus horikoshii [TaxId: 53953]} Length = 325 Back     information, alignment and structure
>d1jbqa_ c.79.1.1 (A:) Cystathionine beta-synthase {Human (Homo sapiens) [TaxId: 9606]} Length = 355 Back     information, alignment and structure
>d1v71a1 c.79.1.1 (A:6-323) Hypothetical protein C320.14 (SPCC320.14, SPCC330.15c) {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 318 Back     information, alignment and structure
>d1tdja1 c.79.1.1 (A:5-335) Threonine deaminase {Escherichia coli [TaxId: 562]} Length = 331 Back     information, alignment and structure
>d1wkva1 c.79.1.1 (A:2-383) O-acetylserine sulfhydrylase (Cysteine synthase) {Archaeon Aeropyrum pernix [TaxId: 56636]} Length = 382 Back     information, alignment and structure
>d1p5ja_ c.79.1.1 (A:) L-serine dehydratase {Human (Homo sapiens) [TaxId: 9606]} Length = 319 Back     information, alignment and structure
>d1ve5a1 c.79.1.1 (A:2-311) Threonine deaminase {Thermus thermophilus [TaxId: 274]} Length = 310 Back     information, alignment and structure
>d2bhsa1 c.79.1.1 (A:2-293) O-acetylserine sulfhydrylase (Cysteine synthase) {Escherichia coli, isoform B (CysM) [TaxId: 562]} Length = 292 Back     information, alignment and structure
>d1v7ca_ c.79.1.1 (A:) Threonine synthase {Thermus thermophilus [TaxId: 274]} Length = 351 Back     information, alignment and structure
>d1ve1a1 c.79.1.1 (A:1-302) O-acetylserine sulfhydrylase (Cysteine synthase) {Thermus thermophilus [TaxId: 274]} Length = 302 Back     information, alignment and structure
>d1z7wa1 c.79.1.1 (A:3-322) O-acetylserine sulfhydrylase (Cysteine synthase) {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 320 Back     information, alignment and structure
>d1fcja_ c.79.1.1 (A:) O-acetylserine sulfhydrylase (Cysteine synthase) {Salmonella typhimurium [TaxId: 90371]} Length = 302 Back     information, alignment and structure
>d1y7la1 c.79.1.1 (A:2-311) O-acetylserine sulfhydrylase (Cysteine synthase) {Haemophilus influenzae [TaxId: 727]} Length = 310 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query310
d1qopb_ 390 Tryptophan synthase, beta-subunit {Salmonella typh 100.0
d1v8za1 386 Tryptophan synthase, beta-subunit {Archaeon Pyroco 100.0
d1v71a1 318 Hypothetical protein C320.14 (SPCC320.14, SPCC330. 99.98
d2bhsa1292 O-acetylserine sulfhydrylase (Cysteine synthase) { 99.98
d1ve5a1 310 Threonine deaminase {Thermus thermophilus [TaxId: 99.97
d1z7wa1 320 O-acetylserine sulfhydrylase (Cysteine synthase) { 99.97
d1jbqa_ 355 Cystathionine beta-synthase {Human (Homo sapiens) 99.97
d1p5ja_ 319 L-serine dehydratase {Human (Homo sapiens) [TaxId: 99.97
d1ve1a1302 O-acetylserine sulfhydrylase (Cysteine synthase) { 99.97
d1o58a_293 O-acetylserine sulfhydrylase (Cysteine synthase) { 99.97
d1tdja1 331 Threonine deaminase {Escherichia coli [TaxId: 562] 99.97
d1y7la1 310 O-acetylserine sulfhydrylase (Cysteine synthase) { 99.96
d1wkva1382 O-acetylserine sulfhydrylase (Cysteine synthase) { 99.96
d1fcja_302 O-acetylserine sulfhydrylase (Cysteine synthase) { 99.95
d1e5xa_ 477 Threonine synthase {Mouse-ear cress (Arabidopsis t 99.94
d1v7ca_ 351 Threonine synthase {Thermus thermophilus [TaxId: 2 99.93
d1tyza_ 338 1-aminocyclopropane-1-carboxylate deaminase {Pseud 99.91
d1j0aa_ 325 1-aminocyclopropane-1-carboxylate deaminase {Archa 99.91
d1f2da_ 341 1-aminocyclopropane-1-carboxylate deaminase {Yeast 99.9
d1vb3a1 428 Threonine synthase {Escherichia coli [TaxId: 562]} 99.75
d1kl7a_ 511 Threonine synthase {Baker's yeast (Saccharomyces c 99.32
d1vp8a_190 Hypothetical protein AF0103 {Archaeoglobus fulgidu 93.41
d1v3va2182 Leukotriene b4 12-hydroxydehydrogenase/prostagland 93.37
d1qora2179 Quinone oxidoreductase {Escherichia coli [TaxId: 5 92.95
d1llua2166 Alcohol dehydrogenase {Pseudomonas aeruginosa [Tax 92.93
d1e3ja2170 Ketose reductase (sorbitol dehydrogenase) {Silverl 92.23
d1pqwa_183 Putative enoyl reductase domain of polyketide synt 91.27
d1rjwa2168 Alcohol dehydrogenase {Bacillus stearothermophilus 90.48
d1iz0a2171 Quinone oxidoreductase {Thermus thermophilus [TaxI 90.18
d1vj0a2182 Hypothetical protein TM0436 {Thermotoga maritima [ 89.85
d1jvba2170 Alcohol dehydrogenase {Archaeon Sulfolobus solfata 89.58
d1piwa2168 Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeas 89.29
d1yb5a2174 Quinone oxidoreductase {Human (Homo sapiens) [TaxI 88.63
d1f8fa2174 Benzyl alcohol dehydrogenase {Acinetobacter calcoa 88.62
d1kola2195 Formaldehyde dehydrogenase {Pseudomonas putida [Ta 88.56
d1pl8a2171 Ketose reductase (sorbitol dehydrogenase) {Human ( 87.86
d1o8ca277 Hypothetical protein YhdH {Escherichia coli [TaxId 87.77
d1gu7a2189 2,4-dienoyl-CoA reductase {Yeast (Candida tropical 87.23
d1o89a2177 Hypothetical protein YhdH {Escherichia coli [TaxId 86.56
d1edoa_ 244 beta-keto acyl carrier protein reductase {Oil seed 86.03
d1t57a_186 Hypothetical protein MTH1675 {Methanobacterium the 86.02
d1ja9a_ 259 1,3,6,8-tetrahydroxynaphthalene reductase {Rice bl 85.89
d3etja278 N5-carboxyaminoimidazole ribonucleotide synthetase 85.83
d1vj1a2187 Putative zinc-binding alcohol dehydrogenase {Mouse 85.79
d1gega_ 255 meso-2,3-butanediol dehydrogenase {Klebsiella pneu 85.41
d1x1ta1 260 D(-)-3-hydroxybutyrate dehydrogenase {Pseudomonas 84.79
d1ae1a_ 258 Tropinone reductase {Jimsonweed (Datura stramonium 84.67
d1tt7a2167 Hypothetical protein YhfP {Bacillus subtilis [TaxI 84.67
d1uufa2168 Hypothetical protein YahK {Escherichia coli [TaxId 84.23
d1jqba2174 Bacterial secondary alcohol dehydrogenase {Clostri 84.15
d1geea_ 261 Glucose dehydrogenase {Bacillus megaterium [TaxId: 84.06
d1g0oa_ 272 1,3,8-trihydroxynaphtalene reductase (THNR, naphto 83.5
d2ew8a1 247 (s)-1-phenylethanol dehydrogenase {Azoarcus sp. eb 82.58
d1h2ba2172 Alcohol dehydrogenase {Archaeon Aeropyrum pernix [ 82.31
d1fmca_ 255 7-alpha-hydroxysteroid dehydrogenase {Escherichia 81.16
d1gtea4196 Dihydropyrimidine dehydrogenase, domain 2 {Pig (Su 81.09
d1zema1 260 Xylitol dehydrogenase {Gluconobacter oxydans [TaxI 81.03
d1d1ta2176 Alcohol dehydrogenase {Human (Homo sapiens), diffe 80.26
>d1qopb_ c.79.1.1 (B:) Tryptophan synthase, beta-subunit {Salmonella typhimurium [TaxId: 90371]} Back     information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: Tryptophan synthase beta subunit-like PLP-dependent enzymes
superfamily: Tryptophan synthase beta subunit-like PLP-dependent enzymes
family: Tryptophan synthase beta subunit-like PLP-dependent enzymes
domain: Tryptophan synthase, beta-subunit
species: Salmonella typhimurium [TaxId: 90371]

Probab=100.00  E-value=6.2e-52  Score=401.60  Aligned_cols=232  Identities=50%  Similarity=0.764  Sum_probs=213.9

Q ss_pred             CCCCccCCCccccccchhhhHHHHHHHHHHhcCChhHHHHHHHHHhhhcCCCCCEEEccccchhhcCCCCCCCeEEEEec
Q 021613           72 VFGRFGRFGGKFVPETLMYALSELESALHKLADDRDFQEELSGILRDYVGRETPLYFAERLTEHYRRPNGGGPHIYLKRE  151 (310)
Q Consensus        72 ~~~~~g~~GG~~vPe~l~~~~~~i~~a~~~~~~d~~f~~el~~~l~~~vg~~TPL~~~~~Ls~~~~~~~~~g~~I~lK~E  151 (310)
                      .|||||.|||+||||+|++.++||+++|.+.+.|++|++|+++.+++|+||||||+++++|++.+      |++||+|+|
T Consensus         4 ~~~~~g~~gg~~~pe~l~~~~~~l~~~~~~~~~~~~f~~e~~~~~~~~~grpTPL~~~~~Ls~~l------g~~IylK~E   77 (390)
T d1qopb_           4 LNPYFGEFGGMYVPQILMPALNQLEEAFVSAQKDPEFQAQFADLLKNYAGRPTALTKCQNITAGT------RTTLYLKRE   77 (390)
T ss_dssp             SCCEETTEEEEESCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCSCCEEECHHHHTTS------SEEEEEEEG
T ss_pred             CCCcccCcCCEeCCHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHhcCCCCchhhEhHhhhhhh------CCEEEEEEe
Confidence            48999999999999999999999999999999999999999999999999999999999999987      789999999


Q ss_pred             CCCCCCChHHHHHHHHHHHhhhcCCCeEEEecCcchHHHHHHHHHHHcCCeEEEEeCCCchhchHHHHHHHHHCCCEEEE
Q 021613          152 DLNHTGAHKINNAVGQALLAKRLGKTRIIAETGAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEVRA  231 (310)
Q Consensus       152 ~lnpTGSfK~Rga~~~l~~a~~~g~~~~Vv~aSsGNhg~AlA~aaa~~Gi~~~Ivmp~~~~~~~~~kv~~~~~~GA~Vv~  231 (310)
                      ++|||||||||++.+++..|++.|++++|+++|+||||+++|++|+++|++|+||||..+..++..|+.+|+.|||+|+.
T Consensus        78 ~lnptGS~K~R~a~~~i~~A~~~G~~~iv~easaGN~g~a~A~aaa~~Gl~~~I~mp~~~~~~k~~~v~~m~~~GAeVv~  157 (390)
T d1qopb_          78 DLLHGGAHKTNQVLGQALLAKRMGKSEIIAETGAGQHGVASALASALLGLKCRIYMGAKDVERQSPNVFRMRLMGAEVIP  157 (390)
T ss_dssp             GGSTTSBTHHHHHHHHHHHHHHTTCCEEEEEESSSHHHHHHHHHHHHHTCEEEEEEEHHHHHHCHHHHHHHHHTTCEEEE
T ss_pred             cCCcccccchhHHHHHHHHHhhcCCceeeeehhHHHHHHHHHHHHHhccCceEEeecccccccchHHHHHHHhcCceEEE
Confidence            99999999999999999999999999999999999999999999999999999999998876678899999999999999


Q ss_pred             EcCCCCCHHHHHHHHHHHHHHccCCceeecCCCCCCCChhhh----------------------hcccceeccchHHHHH
Q 021613          232 VHSGTATLKDATSEAIRDWVTNVETTHYILGSVAGPHPYPMM----------------------VRDFHATSIGEMGWET  289 (310)
Q Consensus       232 v~~~~~~~~da~~~a~~~~~~~~~~~~Yi~gs~~~~hp~~~i----------------------v~d~~~v~vGT~G~e~  289 (310)
                      ++.+..+++++..++.++|..+.+..+|+.++..++|||+.+                      .+|++++++|+|++.+
T Consensus       158 v~~g~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iG~e~~~q~~~~~g~~pD~vv~~vGgGs~~~  237 (390)
T d1qopb_         158 VHSGSATLKDACNEALRDWSGSYETAHYMLGTAAGPHPYPTIVREFQRMIGEETKAQILDKEGRLPDAVIACVGGGSNAI  237 (390)
T ss_dssp             ECSTTSSHHHHHHHHHHHHHHHTTTEEECCCSSCSSTTHHHHHHHTTTHHHHHHHHHHHHHHSSCCSEEEEECSSSHHHH
T ss_pred             ecCCchhhhHhHHHHHHHHhhhhhhhhhccccccccccccccccchhhhhcchhHHHHHHHcCCccceEEecccccchhh
Confidence            998878999999999999999888889999999988988755                      3667777899999999


Q ss_pred             HHHHHHHHhCC-ccccccCcc
Q 021613          290 RCADCMRWWWF-KCHGSLPRI  309 (310)
Q Consensus       290 gi~q~l~~~~~-~~~~~~Pr~  309 (310)
                      |+...|++... ++++..|+.
T Consensus       238 G~~~~f~~~~~~~~ig~ep~~  258 (390)
T d1qopb_         238 GMFADFINDTSVGLIGVEPGG  258 (390)
T ss_dssp             HHHGGGTTCTTSEEEEEEEEE
T ss_pred             heecccccccceeEecccccc
Confidence            98888877554 777776654
>d1v8za1 c.79.1.1 (A:1-386) Tryptophan synthase, beta-subunit {Archaeon Pyrococcus furiosus [TaxId: 2261]} Back     information, alignment and structure
>d1v71a1 c.79.1.1 (A:6-323) Hypothetical protein C320.14 (SPCC320.14, SPCC330.15c) {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Back     information, alignment and structure
>d2bhsa1 c.79.1.1 (A:2-293) O-acetylserine sulfhydrylase (Cysteine synthase) {Escherichia coli, isoform B (CysM) [TaxId: 562]} Back     information, alignment and structure
>d1ve5a1 c.79.1.1 (A:2-311) Threonine deaminase {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1z7wa1 c.79.1.1 (A:3-322) O-acetylserine sulfhydrylase (Cysteine synthase) {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure
>d1jbqa_ c.79.1.1 (A:) Cystathionine beta-synthase {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1p5ja_ c.79.1.1 (A:) L-serine dehydratase {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1ve1a1 c.79.1.1 (A:1-302) O-acetylserine sulfhydrylase (Cysteine synthase) {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1o58a_ c.79.1.1 (A:) O-acetylserine sulfhydrylase (Cysteine synthase) {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d1tdja1 c.79.1.1 (A:5-335) Threonine deaminase {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1y7la1 c.79.1.1 (A:2-311) O-acetylserine sulfhydrylase (Cysteine synthase) {Haemophilus influenzae [TaxId: 727]} Back     information, alignment and structure
>d1wkva1 c.79.1.1 (A:2-383) O-acetylserine sulfhydrylase (Cysteine synthase) {Archaeon Aeropyrum pernix [TaxId: 56636]} Back     information, alignment and structure
>d1fcja_ c.79.1.1 (A:) O-acetylserine sulfhydrylase (Cysteine synthase) {Salmonella typhimurium [TaxId: 90371]} Back     information, alignment and structure
>d1e5xa_ c.79.1.1 (A:) Threonine synthase {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure
>d1v7ca_ c.79.1.1 (A:) Threonine synthase {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1tyza_ c.79.1.1 (A:) 1-aminocyclopropane-1-carboxylate deaminase {Pseudomonas sp., strain ACP [TaxId: 306]} Back     information, alignment and structure
>d1j0aa_ c.79.1.1 (A:) 1-aminocyclopropane-1-carboxylate deaminase {Archaeon Pyrococcus horikoshii [TaxId: 53953]} Back     information, alignment and structure
>d1f2da_ c.79.1.1 (A:) 1-aminocyclopropane-1-carboxylate deaminase {Yeast (Hansenula saturnus) [TaxId: 4906]} Back     information, alignment and structure
>d1vb3a1 c.79.1.1 (A:1-428) Threonine synthase {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1kl7a_ c.79.1.1 (A:) Threonine synthase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1vp8a_ c.49.1.2 (A:) Hypothetical protein AF0103 {Archaeoglobus fulgidus [TaxId: 2234]} Back     information, alignment and structure
>d1v3va2 c.2.1.1 (A:113-294) Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase {Guinea pig (Cavia porcellus) [TaxId: 10141]} Back     information, alignment and structure
>d1qora2 c.2.1.1 (A:113-291) Quinone oxidoreductase {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1llua2 c.2.1.1 (A:144-309) Alcohol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} Back     information, alignment and structure
>d1e3ja2 c.2.1.1 (A:143-312) Ketose reductase (sorbitol dehydrogenase) {Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]} Back     information, alignment and structure
>d1pqwa_ c.2.1.1 (A:) Putative enoyl reductase domain of polyketide synthase {Mycobacterium tuberculosis [TaxId: 1773]} Back     information, alignment and structure
>d1rjwa2 c.2.1.1 (A:138-305) Alcohol dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]} Back     information, alignment and structure
>d1iz0a2 c.2.1.1 (A:99-269) Quinone oxidoreductase {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1vj0a2 c.2.1.1 (A:156-337) Hypothetical protein TM0436 {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d1jvba2 c.2.1.1 (A:144-313) Alcohol dehydrogenase {Archaeon Sulfolobus solfataricus [TaxId: 2287]} Back     information, alignment and structure
>d1piwa2 c.2.1.1 (A:153-320) Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1yb5a2 c.2.1.1 (A:121-294) Quinone oxidoreductase {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1f8fa2 c.2.1.1 (A:163-336) Benzyl alcohol dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]} Back     information, alignment and structure
>d1kola2 c.2.1.1 (A:161-355) Formaldehyde dehydrogenase {Pseudomonas putida [TaxId: 303]} Back     information, alignment and structure
>d1pl8a2 c.2.1.1 (A:146-316) Ketose reductase (sorbitol dehydrogenase) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1o8ca2 c.2.1.1 (A:116-192) Hypothetical protein YhdH {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1gu7a2 c.2.1.1 (A:161-349) 2,4-dienoyl-CoA reductase {Yeast (Candida tropicalis) [TaxId: 5482]} Back     information, alignment and structure
>d1o89a2 c.2.1.1 (A:116-292) Hypothetical protein YhdH {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1edoa_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Oil seed rape (Brassica napus) [TaxId: 3708]} Back     information, alignment and structure
>d1t57a_ c.49.1.2 (A:) Hypothetical protein MTH1675 {Methanobacterium thermoautotrophicum [TaxId: 145262]} Back     information, alignment and structure
>d1ja9a_ c.2.1.2 (A:) 1,3,6,8-tetrahydroxynaphthalene reductase {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]} Back     information, alignment and structure
>d3etja2 c.30.1.1 (A:1-78) N5-carboxyaminoimidazole ribonucleotide synthetase PurK (AIRC), N-domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1vj1a2 c.2.1.1 (A:125-311) Putative zinc-binding alcohol dehydrogenase {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1gega_ c.2.1.2 (A:) meso-2,3-butanediol dehydrogenase {Klebsiella pneumoniae [TaxId: 573]} Back     information, alignment and structure
>d1x1ta1 c.2.1.2 (A:1-260) D(-)-3-hydroxybutyrate dehydrogenase {Pseudomonas fragi [TaxId: 296]} Back     information, alignment and structure
>d1ae1a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura stramonium), I [TaxId: 4076]} Back     information, alignment and structure
>d1tt7a2 c.2.1.1 (A:128-294) Hypothetical protein YhfP {Bacillus subtilis [TaxId: 1423]} Back     information, alignment and structure
>d1uufa2 c.2.1.1 (A:145-312) Hypothetical protein YahK {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1jqba2 c.2.1.1 (A:1140-1313) Bacterial secondary alcohol dehydrogenase {Clostridium beijerinckii [TaxId: 1520]} Back     information, alignment and structure
>d1geea_ c.2.1.2 (A:) Glucose dehydrogenase {Bacillus megaterium [TaxId: 1404]} Back     information, alignment and structure
>d1g0oa_ c.2.1.2 (A:) 1,3,8-trihydroxynaphtalene reductase (THNR, naphtol reductase) {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]} Back     information, alignment and structure
>d2ew8a1 c.2.1.2 (A:3-249) (s)-1-phenylethanol dehydrogenase {Azoarcus sp. ebn1 [TaxId: 76114]} Back     information, alignment and structure
>d1h2ba2 c.2.1.1 (A:155-326) Alcohol dehydrogenase {Archaeon Aeropyrum pernix [TaxId: 56636]} Back     information, alignment and structure
>d1fmca_ c.2.1.2 (A:) 7-alpha-hydroxysteroid dehydrogenase {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1gtea4 c.4.1.1 (A:184-287,A:441-532) Dihydropyrimidine dehydrogenase, domain 2 {Pig (Sus scrofa) [TaxId: 9823]} Back     information, alignment and structure
>d1zema1 c.2.1.2 (A:3-262) Xylitol dehydrogenase {Gluconobacter oxydans [TaxId: 442]} Back     information, alignment and structure
>d1d1ta2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]} Back     information, alignment and structure