Citrus Sinensis ID: 021621

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310
MEMNGTPALHGYLMPAEWEPHSQCWMGWPVRYERLDNWRDDALHAQRVFAKVATAISKFEPVTVCASAAQWENARSQLPENIRVIEMSMNGSWFRDTGPTIVVNKSSASSGAQAPKVAGIDWNFNSWGGVDDGCYRDWSLDLQVARKILSTERLPRFPHSMVLEGGSIHVDGEGTCLTTEECLLNKNRNPHLTKGQIENELKAYLGVMKIIWLPRGLFGMIHDGEAKPRLAGTRLAASYVNFYIANGGIITPQFGDKKWDGEAVRVLSQAFPKYEVVGIERAREIVLGGGNIHCITQQQPAIPTNAAKLD
cccccccccccccccccccccEEEEEEccccccccccHHHHHHHHHHHHHHHHHHHHccccEEEEccHHHHHHHHHHccccEEEEEEccccccccccccEEEEcccccccccccccEEEEEEEEccccccccccccccHHHHHHHHHHHHHccccccccccccccccEEEcccccEEEEccEEccccccccccHHHHHHHHHHHHcccEEEEcccccccccccccccccccccccccccEEEEEEcccEEcccccccccHHHHHHHHHHHccccEEEccccHHHHHHccccccEEccccccccccccccc
cccccccHHccccccccccccccEEEEcccccccccccHcccHHHHHHHHHHHHHHHccccEEEEEcHHHHHHHHHHccccEEEEEEcccccHEEccccEEEEcccccccccccccEEEEEEEEEccccccccccccHHHHHHHHHHHHHHHccccccccEEEEccEEEEcccEEEEEcHHHcccccccccccHHHHHHHHHHHccccEEEEEcccccccccccccccccccccccEEEEEEEEcccEEEEEcccccccHHHHHHHHHHHccccEEEEcccHHHHHcccccEEEEEcccccccccccEcc
memngtpalhgylmpaewephsqcwmgwpvryerldnwrDDALHAQRVFAKVATAIskfepvtvcASAAQWENARSQLPENIRVIEMsmngswfrdtgptivvnkssassgaqapkvagidwnfnswggvddgcyrdWSLDLQVARKILsterlprfphsmvleggsihvdgegtcltteecllnknrnphltkgQIENELKAYLGVMKIiwlprglfgmihdgeakprlagTRLAASYVNFYianggiitpqfgdkkwdGEAVRVLSQAFPKYEVVGIERAREIVLgggnihcitqqqpaiptnaakld
MEMNGTPALHGYLMPAEWEPHSQCWMGWPVRYERLDNWRDDALHAQRVFAKVATAISKFEPVTVCASAAQWENARSQLPENIRVIEMSMNGSWFRDTGPTIVVNKSSASSGAQAPKVAGIDWNFNSWGGVDDGCYRDWSLDLQVARKILsterlprfphsmvleggsihVDGEGTCLTTEECLlnknrnphltkgQIENELKAYLGVMKIIWLPRGLFGMIHDGEAKPRLAGTRLAASYVNFYIANGGIITPQFGDKKWDGEAVRVLSqafpkyevvGIERAREIVLGGGNIHcitqqqpaiptnaakld
MEMNGTPALHGYLMPAEWEPHSQCWMGWPVRYERLDNWRDDALHAQRVFAKVATAISKFEPVTVCASAAQWENARSQLPENIRVIEMSMNGSWFRDTGPTIVVNKSSASSGAQAPKVAGIDWNFNSWGGVDDGCYRDWSLDLQVARKILSTERLPRFPHSMVLEGGSIHVDGEGTCLTTEECLLNKNRNPHLTKGQIENELKAYLGVMKIIWLPRGLFGMIHDGEAKPRLAGTRLAASYVNFYIANGGIITPQFGDKKWDGEAVRVLSQAFPKYEVVGIERAREIVLGGGNIHCITQQQPAIPTNAAKLD
********LHGYLMPAEWEPHSQCWMGWPVRYERLDNWRDDALHAQRVFAKVATAISKFEPVTVCASAAQWENARSQLPENIRVIEMSMNGSWFRDTGPTIVV************KVAGIDWNFNSWGGVDDGCYRDWSLDLQVARKILSTERLPRFPHSMVLEGGSIHVDGEGTCLTTEECLLNKNRNPHLTKGQIENELKAYLGVMKIIWLPRGLFGMIHDGEAKPRLAGTRLAASYVNFYIANGGIITPQFGDKKWDGEAVRVLSQAFPKYEVVGIERAREIVLGGGNIHCITQ*************
********LHGYLMPAEWEPHSQCWMGWPVRYERLDNWRDDALHAQRVFAKVATAISKFEPVTVCASAAQWENARSQLPENIRVIEMSMNGSWFRDTGPTIVVNKSSASSGAQAPKVAGIDWNFNSWGGVDDGCYRDWSLDLQVARKILSTERLPRFPHSMVLEGGSIHVDGEGTCLTTEECLLNKNRNPHLTKGQIENELKAYLGVMKIIWLPRGLFGMIHDGEAKPRLAGTRLAASYVNFYIANGGIITPQFGDKKWDGEAVRVLSQAFPKYEVVGIERAREIVLGGGNIHCITQQQPAIP*******
MEMNGTPALHGYLMPAEWEPHSQCWMGWPVRYERLDNWRDDALHAQRVFAKVATAISKFEPVTVCASAAQWENARSQLPENIRVIEMSMNGSWFRDTGPTIVVNK*********PKVAGIDWNFNSWGGVDDGCYRDWSLDLQVARKILSTERLPRFPHSMVLEGGSIHVDGEGTCLTTEECLLNKNRNPHLTKGQIENELKAYLGVMKIIWLPRGLFGMIHDGEAKPRLAGTRLAASYVNFYIANGGIITPQFGDKKWDGEAVRVLSQAFPKYEVVGIERAREIVLGGGNIHCITQQQPAIPTNAAKLD
*****TP**HGYLMPAEWEPHSQCWMGWPVRYERLDNWRDDALHAQRVFAKVATAISKFEPVTVCASAAQWENARSQLPENIRVIEMSMNGSWFRDTGPTIVVNKSSASSGAQAPKVAGIDWNFNSWGGVDDGCYRDWSLDLQVARKILSTERLPRFPHSMVLEGGSIHVDGEGTCLTTEECLLNKNRNPHLTKGQIENELKAYLGVMKIIWLPRGLFGMIHDGEAKPRLAGTRLAASYVNFYIANGGIITPQFGDKKWDGEAVRVLSQAFPKYEVVGIERAREIVLGGGNIHCITQQQP**********
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MEMNGTPALHGYLMPAEWEPHSQCWMGWPVRYERLDNWRDDALHAQRVFAKVATAISKFEPVTVCASAAQWENARSQLPENIRVIEMSMNGSWFRDTGPTIVVNKSSASSGAQAPKVAGIDWNFNSWGGVDDGCYRDWSLDLQVARKILSTERLPRFPHSMVLEGGSIHVDGEGTCLTTEECLLNKNRNPHLTKGQIENELKAYLGVMKIIWLPRGLFGMIHDGEAKPRLAGTRLAASYVNFYIANGGIITPQFGDKKWDGEAVRVLSQAFPKYEVVGIERAREIVLGGGNIHCITQQQPAIPTNAAKLD
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query310 2.2.26 [Sep-21-2011]
Q8GWW7383 Agmatine deiminase OS=Ara yes no 0.693 0.561 0.711 4e-91
A6UY93368 Agmatine deiminase OS=Pse yes no 0.670 0.565 0.565 5e-64
Q87UB2368 Agmatine deiminase OS=Pse yes no 0.680 0.573 0.553 4e-63
Q4ZLL3368 Agmatine deiminase OS=Pse yes no 0.680 0.573 0.549 1e-62
A4XP44368 Agmatine deiminase OS=Pse yes no 0.680 0.573 0.540 2e-62
Q6LG16363 Putative agmatine deimina yes no 0.929 0.793 0.396 2e-62
Q48Q55368 Agmatine deiminase OS=Pse yes no 0.680 0.573 0.544 2e-62
C3K5U8368 Agmatine deiminase OS=Pse yes no 0.680 0.573 0.553 6e-62
Q725C6364 Putative agmatine deimina yes no 0.919 0.782 0.411 3e-61
Q2SRJ6364 Putative agmatine deimina yes no 0.664 0.565 0.539 4e-61
>sp|Q8GWW7|AGUA_ARATH Agmatine deiminase OS=Arabidopsis thaliana GN=AIH PE=1 SV=2 Back     alignment and function desciption
 Score =  334 bits (857), Expect = 4e-91,   Method: Compositional matrix adjust.
 Identities = 155/218 (71%), Positives = 175/218 (80%), Gaps = 3/218 (1%)

Query: 2   EMNGTPALHGYLMPAEWEPHSQCWMGWPVRYERLDNWRDDALHAQRVFAKVATAISKFEP 61
           E   +PA HGY MPAEW+ H+Q W+GWP   ER DNWR +AL AQRVFA VA AISKFEP
Sbjct: 3   ESRESPAEHGYYMPAEWDSHAQTWIGWP---ERQDNWRHNALPAQRVFADVAKAISKFEP 59

Query: 62  VTVCASAAQWENARSQLPENIRVIEMSMNGSWFRDTGPTIVVNKSSASSGAQAPKVAGID 121
           VTVCAS AQWENAR QLPE+IRV+EMSMN SWFRD+GPT +V K      +    +AGID
Sbjct: 60  VTVCASPAQWENARKQLPEDIRVVEMSMNDSWFRDSGPTFIVRKRPVKLSSLNRNIAGID 119

Query: 122 WNFNSWGGVDDGCYRDWSLDLQVARKILSTERLPRFPHSMVLEGGSIHVDGEGTCLTTEE 181
           WNFN+WGG +DGCY DWS DL V+RKIL+ ER+PRF HSM+LEGGSIHVDGEGTCL TEE
Sbjct: 120 WNFNAWGGANDGCYNDWSHDLLVSRKILALERIPRFQHSMILEGGSIHVDGEGTCLVTEE 179

Query: 182 CLLNKNRNPHLTKGQIENELKAYLGVMKIIWLPRGLFG 219
           CLLNKNRNPH++K QIE ELK YLGV   IWLPRGL+G
Sbjct: 180 CLLNKNRNPHMSKEQIEEELKKYLGVQSFIWLPRGLYG 217
Mediates the hydrolysis of agmatine into N-carbamoylputrescine in the arginine decarboxylase (ADC) pathway of putrescine biosynthesis, a basic polyamine.
Arabidopsis thaliana (taxid: 3702)
EC: 3EC: .EC: 5EC: .EC: 3EC: .EC: 1EC: 2
>sp|A6UY93|AGUA_PSEA7 Agmatine deiminase OS=Pseudomonas aeruginosa (strain PA7) GN=aguA PE=3 SV=1 Back     alignment and function description
>sp|Q87UB2|AGUA_PSESM Agmatine deiminase OS=Pseudomonas syringae pv. tomato (strain DC3000) GN=aguA PE=3 SV=1 Back     alignment and function description
>sp|Q4ZLL3|AGUA_PSEU2 Agmatine deiminase OS=Pseudomonas syringae pv. syringae (strain B728a) GN=aguA PE=3 SV=1 Back     alignment and function description
>sp|A4XP44|AGUA_PSEMY Agmatine deiminase OS=Pseudomonas mendocina (strain ymp) GN=aguA PE=3 SV=1 Back     alignment and function description
>sp|Q6LG16|AGUA_PHOPR Putative agmatine deiminase OS=Photobacterium profundum GN=aguA PE=3 SV=2 Back     alignment and function description
>sp|Q48Q55|AGUA_PSE14 Agmatine deiminase OS=Pseudomonas syringae pv. phaseolicola (strain 1448A / Race 6) GN=aguA PE=3 SV=1 Back     alignment and function description
>sp|C3K5U8|AGUA_PSEFS Agmatine deiminase OS=Pseudomonas fluorescens (strain SBW25) GN=aguA PE=3 SV=1 Back     alignment and function description
>sp|Q725C6|AGUA1_LISMF Putative agmatine deiminase 1 OS=Listeria monocytogenes serotype 4b (strain F2365) GN=aguA1 PE=3 SV=1 Back     alignment and function description
>sp|Q2SRJ6|AGUA_MYCCT Putative agmatine deiminase OS=Mycoplasma capricolum subsp. capricolum (strain California kid / ATCC 27343 / NCTC 10154) GN=aguA PE=3 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query310
148906450367 unknown [Picea sitchensis] 0.935 0.790 0.549 1e-103
225455756374 PREDICTED: agmatine deiminase [Vitis vin 0.696 0.577 0.803 1e-100
317106658378 JHL10I11.8 [Jatropha curcas] 0.687 0.563 0.802 1e-100
255541906377 Agmatine deiminase, putative [Ricinus co 0.687 0.564 0.802 1e-100
449440870381 PREDICTED: agmatine deiminase-like [Cucu 0.696 0.566 0.767 4e-98
224130088380 predicted protein [Populus trichocarpa] 0.677 0.552 0.779 9e-97
147842216369 hypothetical protein VITISV_043040 [Viti 0.680 0.571 0.785 1e-96
356562666376 PREDICTED: agmatine deiminase-like [Glyc 0.696 0.574 0.740 4e-95
357477779322 Agmatine deiminase [Medicago truncatula] 0.696 0.670 0.707 5e-92
388492142374 unknown [Medicago truncatula] 0.696 0.577 0.703 2e-91
>gi|148906450|gb|ABR16378.1| unknown [Picea sitchensis] Back     alignment and taxonomy information
 Score =  380 bits (977), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 206/375 (54%), Positives = 241/375 (64%), Gaps = 85/375 (22%)

Query: 1   MEMNGTPALHGYLMPAEWEPHSQCWMGWPVRYERLDNWRDDALHAQRVFAKVATAISKFE 60
           M+ N +P+  GY MPAEWE HSQCWMGWP   ER DNWR+ A+H QRVF +VA+AISKFE
Sbjct: 1   MDNNASPSEFGYRMPAEWEFHSQCWMGWP---ERPDNWRESAMHGQRVFVEVASAISKFE 57

Query: 61  PVTVCASAAQWENARSQLPENIRVIEMSMNGSWFRDTGPTIVVNKSSASSGAQAPKVAGI 120
            VTVCASAAQW++AR+QLP+NIRV+EMSMN +WFRD GPT VV   ++S       VAGI
Sbjct: 58  SVTVCASAAQWDSARAQLPKNIRVLEMSMNDAWFRDIGPTFVVCDRTSS-------VAGI 110

Query: 121 DWNFNSWGGVDDGCYRDWSLDLQVARKILSTERLPRFPHSMVLEGGSIHVDGEGTCLTTE 180
           DW+FNSWGG ++GCY+DWSLD  VARKI+  ERL RFPHSMVLEGGSIHVDGEGTC+TTE
Sbjct: 111 DWSFNSWGGAENGCYKDWSLDSLVARKIIEVERLTRFPHSMVLEGGSIHVDGEGTCITTE 170

Query: 181 ECLLNKNRNPHL------------------------------TKGQIEN----------- 199
           ECLLN NRNPHL                              T G I+N           
Sbjct: 171 ECLLNPNRNPHLTREAIEHQLKHYLGVTTIIWLPWGLYGDDDTNGHIDNMCCFVRPGVVM 230

Query: 200 --------------ELKAY-------------LGVMKIIWLPRGLFGMIHDGEA------ 226
                          L+AY             L ++KI  +P  LF    + +       
Sbjct: 231 LAWTDDENDPQYERSLEAYSVLSKAIDAHGRTLQIIKI-HVPEPLFMTEEEADGLQALDG 289

Query: 227 KPRLAGTRLAASYVNFYIANGGIITPQFGDKKWDGEAVRVLSQAFPKYEVVGIERAREIV 286
           KPR AGTRLAASY+NFYIAN GI+ P FGD+K D EAV VL+ AFP +EV+ +  AREIV
Sbjct: 290 KPRNAGTRLAASYINFYIANKGIVAPAFGDEKRDKEAVDVLTAAFPDHEVITVSGAREIV 349

Query: 287 LGGGNIHCITQQQPA 301
           LGGGNIHCITQQQPA
Sbjct: 350 LGGGNIHCITQQQPA 364

Source: Picea sitchensis

Species: Picea sitchensis

Genus: Picea

Family: Pinaceae

Order: Coniferales

Class: Coniferopsida

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|225455756|ref|XP_002269435.1| PREDICTED: agmatine deiminase [Vitis vinifera] gi|297734125|emb|CBI15372.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|317106658|dbj|BAJ53162.1| JHL10I11.8 [Jatropha curcas] Back     alignment and taxonomy information
>gi|255541906|ref|XP_002512017.1| Agmatine deiminase, putative [Ricinus communis] gi|223549197|gb|EEF50686.1| Agmatine deiminase, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|449440870|ref|XP_004138207.1| PREDICTED: agmatine deiminase-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|224130088|ref|XP_002328651.1| predicted protein [Populus trichocarpa] gi|222838827|gb|EEE77178.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|147842216|emb|CAN66917.1| hypothetical protein VITISV_043040 [Vitis vinifera] Back     alignment and taxonomy information
>gi|356562666|ref|XP_003549590.1| PREDICTED: agmatine deiminase-like [Glycine max] Back     alignment and taxonomy information
>gi|357477779|ref|XP_003609175.1| Agmatine deiminase [Medicago truncatula] gi|355510230|gb|AES91372.1| Agmatine deiminase [Medicago truncatula] Back     alignment and taxonomy information
>gi|388492142|gb|AFK34137.1| unknown [Medicago truncatula] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query310
TAIR|locus:2181499383 EMB1873 "EMBRYO DEFECTIVE 1873 0.693 0.561 0.711 1.1e-120
UNIPROTKB|Q87UB2368 aguA "Agmatine deiminase" [Pse 0.680 0.573 0.553 8.3e-81
UNIPROTKB|Q48Q55368 aguA "Agmatine deiminase" [Pse 0.680 0.573 0.544 5.8e-80
UNIPROTKB|Q725C6364 aguA1 "Putative agmatine deimi 0.635 0.541 0.559 4.1e-77
UNIPROTKB|Q725C4369 aguA2 "Putative agmatine deimi 0.664 0.558 0.490 4.7e-74
UNIPROTKB|Q8EIF2370 aguA "Putative agmatine deimin 0.667 0.559 0.463 2e-67
TIGR_CMR|SO_0887370 SO_0887 "conserved hypothetica 0.667 0.559 0.463 2e-67
TIGR_CMR|GSU_1028344 GSU_1028 "peptidylarginine dei 0.606 0.546 0.355 5.1e-39
TIGR_CMR|SPO_2980338 SPO_2980 "porphyromonas-type p 0.619 0.568 0.331 2.1e-34
UNIPROTKB|Q607A0367 MCA1861 "Putative uncharacteri 0.596 0.504 0.350 4.3e-32
TAIR|locus:2181499 EMB1873 "EMBRYO DEFECTIVE 1873" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 860 (307.8 bits), Expect = 1.1e-120, Sum P(2) = 1.1e-120
 Identities = 155/218 (71%), Positives = 175/218 (80%)

Query:     2 EMNGTPALHGYLMPAEWEPHSQCWMGWPVRYERLDNWRDDALHAQRVFAKVATAISKFEP 61
             E   +PA HGY MPAEW+ H+Q W+GWP   ER DNWR +AL AQRVFA VA AISKFEP
Sbjct:     3 ESRESPAEHGYYMPAEWDSHAQTWIGWP---ERQDNWRHNALPAQRVFADVAKAISKFEP 59

Query:    62 VTVCASAAQWENARSQLPENIRVIEMSMNGSWFRDTGPTIVVNKSSASSGAQAPKVAGID 121
             VTVCAS AQWENAR QLPE+IRV+EMSMN SWFRD+GPT +V K      +    +AGID
Sbjct:    60 VTVCASPAQWENARKQLPEDIRVVEMSMNDSWFRDSGPTFIVRKRPVKLSSLNRNIAGID 119

Query:   122 WNFNSWGGVDDGCYRDWSLDLQVARKILSTERLPRFPHSMVLEGGSIHVDGEGTCLTTEE 181
             WNFN+WGG +DGCY DWS DL V+RKIL+ ER+PRF HSM+LEGGSIHVDGEGTCL TEE
Sbjct:   120 WNFNAWGGANDGCYNDWSHDLLVSRKILALERIPRFQHSMILEGGSIHVDGEGTCLVTEE 179

Query:   182 CLLNKNRNPHLTKGQIENELKAYLGVMKIIWLPRGLFG 219
             CLLNKNRNPH++K QIE ELK YLGV   IWLPRGL+G
Sbjct:   180 CLLNKNRNPHMSKEQIEEELKKYLGVQSFIWLPRGLYG 217
GO:0005634 "nucleus" evidence=ISM
GO:0009446 "putrescine biosynthetic process" evidence=IEA
GO:0009793 "embryo development ending in seed dormancy" evidence=NAS
GO:0047632 "agmatine deiminase activity" evidence=IEA;IDA
GO:0006596 "polyamine biosynthetic process" evidence=IDA
UNIPROTKB|Q87UB2 aguA "Agmatine deiminase" [Pseudomonas syringae pv. tomato str. DC3000 (taxid:223283)] Back     alignment and assigned GO terms
UNIPROTKB|Q48Q55 aguA "Agmatine deiminase" [Pseudomonas syringae pv. phaseolicola 1448A (taxid:264730)] Back     alignment and assigned GO terms
UNIPROTKB|Q725C6 aguA1 "Putative agmatine deiminase 1" [Listeria monocytogenes serotype 4b str. F2365 (taxid:265669)] Back     alignment and assigned GO terms
UNIPROTKB|Q725C4 aguA2 "Putative agmatine deiminase 2" [Listeria monocytogenes serotype 4b str. F2365 (taxid:265669)] Back     alignment and assigned GO terms
UNIPROTKB|Q8EIF2 aguA "Putative agmatine deiminase" [Shewanella oneidensis MR-1 (taxid:211586)] Back     alignment and assigned GO terms
TIGR_CMR|SO_0887 SO_0887 "conserved hypothetical protein" [Shewanella oneidensis MR-1 (taxid:211586)] Back     alignment and assigned GO terms
TIGR_CMR|GSU_1028 GSU_1028 "peptidylarginine deiminase-related protein" [Geobacter sulfurreducens PCA (taxid:243231)] Back     alignment and assigned GO terms
TIGR_CMR|SPO_2980 SPO_2980 "porphyromonas-type peptidyl-arginine deiminase family protein" [Ruegeria pomeroyi DSS-3 (taxid:246200)] Back     alignment and assigned GO terms
UNIPROTKB|Q607A0 MCA1861 "Putative uncharacterized protein" [Methylococcus capsulatus str. Bath (taxid:243233)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q5ZZK4AGUA_LEGPH3, ., 5, ., 3, ., 1, 20.37530.91610.8160yesno
Q5X986AGUA_LEGPA3, ., 5, ., 3, ., 1, 20.37460.90960.8150yesno
Q5X0L4AGUA_LEGPL3, ., 5, ., 3, ., 1, 20.37740.90960.8126yesno
Q8GWW7AGUA_ARATH3, ., 5, ., 3, ., 1, 20.71100.69350.5613yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer3.5.3.120.946

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
GSVIVG00017570001
SubName- Full=Chromosome chr17 scaffold_16, whole genome shotgun sequence; (371 aa)
(Vitis vinifera)
Predicted Functional Partners:
ADC
RecName- Full=Arginine decarboxylase; EC=4.1.1.19; (713 aa)
•    •• 0.994
GSVIVG00037337001
SubName- Full=Chromosome undetermined scaffold_87, whole genome shotgun sequence; (311 aa)
•••  •• 0.993
GSVIVG00014587001
SubName- Full=Chromosome chr18 scaffold_1, whole genome shotgun sequence; (261 aa)
•     • 0.838
GSVIVG00019724001
RecName- Full=Pseudouridylate synthase; EC=5.4.99.-; (304 aa)
•     • 0.774
GSVIVG00034896001
SubName- Full=Chromosome chr4 scaffold_73, whole genome shotgun sequence; (407 aa)
•     • 0.726
GSVIVG00032252001
SubName- Full=Chromosome chr4 scaffold_6, whole genome shotgun sequence; (307 aa)
••   •• 0.711
GSVIVG00035063001
SubName- Full=Chromosome chr1 scaffold_75, whole genome shotgun sequence; (127 aa)
•     • 0.708
GSVIVG00028846001
SubName- Full=Chromosome chr1 scaffold_46, whole genome shotgun sequence; (297 aa)
•     • 0.677
GSVIVG00015322001
SubName- Full=Chromosome chr18 scaffold_1, whole genome shotgun sequence; (167 aa)
•     • 0.614
GSVIVG00026399001
SubName- Full=Chromosome chr15 scaffold_37, whole genome shotgun sequence; (348 aa)
      • 0.607

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query310
PLN02690374 PLN02690, PLN02690, Agmatine deiminase 1e-138
TIGR03380357 TIGR03380, agmatine_aguA, agmatine deiminase 1e-122
COG2957346 COG2957, COG2957, Peptidylarginine deiminase and r 1e-112
PRK13551362 PRK13551, PRK13551, agmatine deiminase; Provisiona 1e-111
pfam04371329 pfam04371, PAD_porph, Porphyromonas-type peptidyl- 2e-96
PLN02690374 PLN02690, PLN02690, Agmatine deiminase 4e-47
TIGR03380357 TIGR03380, agmatine_aguA, agmatine deiminase 4e-35
PRK13551362 PRK13551, PRK13551, agmatine deiminase; Provisiona 8e-35
pfam04371329 pfam04371, PAD_porph, Porphyromonas-type peptidyl- 4e-33
>gnl|CDD|178293 PLN02690, PLN02690, Agmatine deiminase Back     alignment and domain information 
 Score =  394 bits (1014), Expect = e-138
 Identities = 160/219 (73%), Positives = 173/219 (78%), Gaps = 5/219 (2%)

Query: 3   MNGTPALHGYLMPAEWEPHSQCWMGWPVRYERLDNWRDDALHAQRVFAKVATAISKFEPV 62
              TP   GY MPAEWEPH+ CWMGWP   ER DNWRD+A  AQ+ FA VA AISKFEPV
Sbjct: 1   GRATPKELGYRMPAEWEPHAGCWMGWP---ERPDNWRDNAKPAQQQFAAVAKAISKFEPV 57

Query: 63  TVCASAAQWENARSQLPE--NIRVIEMSMNGSWFRDTGPTIVVNKSSASSGAQAPKVAGI 120
           TVCAS AQWENAR QLP   N+RV+EMSMN SWFRDTGPT VV      S +   +VAGI
Sbjct: 58  TVCASPAQWENAREQLPGVSNVRVVEMSMNDSWFRDTGPTFVVRDVPVDSSSGEREVAGI 117

Query: 121 DWNFNSWGGVDDGCYRDWSLDLQVARKILSTERLPRFPHSMVLEGGSIHVDGEGTCLTTE 180
           DW+FN+WGG   GCY DWSLDL VARKIL  ERLPRFPHSM+LEGGSIHVDGEGTCLTTE
Sbjct: 118 DWDFNAWGGALKGCYPDWSLDLLVARKILEAERLPRFPHSMILEGGSIHVDGEGTCLTTE 177

Query: 181 ECLLNKNRNPHLTKGQIENELKAYLGVMKIIWLPRGLFG 219
           ECLLN NRNPHLTK +IE ELK YLGV K+IWLPRGL+G
Sbjct: 178 ECLLNPNRNPHLTKEEIEEELKEYLGVEKVIWLPRGLYG 216

Length = 374
>gnl|CDD|132423 TIGR03380, agmatine_aguA, agmatine deiminase Back     alignment and domain information
>gnl|CDD|225505 COG2957, COG2957, Peptidylarginine deiminase and related enzymes [Amino acid transport and metabolism] Back     alignment and domain information
>gnl|CDD|184135 PRK13551, PRK13551, agmatine deiminase; Provisional Back     alignment and domain information
>gnl|CDD|218048 pfam04371, PAD_porph, Porphyromonas-type peptidyl-arginine deiminase Back     alignment and domain information
>gnl|CDD|178293 PLN02690, PLN02690, Agmatine deiminase Back     alignment and domain information
>gnl|CDD|132423 TIGR03380, agmatine_aguA, agmatine deiminase Back     alignment and domain information
>gnl|CDD|184135 PRK13551, PRK13551, agmatine deiminase; Provisional Back     alignment and domain information
>gnl|CDD|218048 pfam04371, PAD_porph, Porphyromonas-type peptidyl-arginine deiminase Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 310
COG2957346 Peptidylarginine deiminase and related enzymes [Am 100.0
PLN02690374 Agmatine deiminase 100.0
PRK13551362 agmatine deiminase; Provisional 100.0
TIGR03380357 agmatine_aguA agmatine deiminase. Members of this 100.0
PF04371329 PAD_porph: Porphyromonas-type peptidyl-arginine de 100.0
PF02274281 Amidinotransf: Amidinotransferase; InterPro: IPR00 98.47
COG1834267 N-Dimethylarginine dimethylaminohydrolase [Amino a 98.31
PRK01388406 arginine deiminase; Provisional 96.64
TIGR01078405 arcA arginine deiminase. Arginine deiminase is the 95.99
COG2235409 ArcA Arginine deiminase [Amino acid transport and 91.8
>COG2957 Peptidylarginine deiminase and related enzymes [Amino acid transport and metabolism] Back     alignment and domain information 
Probab=100.00  E-value=6.7e-99  Score=698.56  Aligned_cols=284  Identities=51%  Similarity=0.902  Sum_probs=267.0

Q ss_pred             CCCCCCCCCCccCCCCCccceeEEEecCCCCCCCCCchhhhHHHHHHHHHHHHHHHcCccEEEEeCchhHHHHHhhCC-C
Q 021621            2 EMNGTPALHGYLMPAEWEPHSQCWMGWPVRYERLDNWRDDALHAQRVFAKVATAISKFEPVTVCASAAQWENARSQLP-E   80 (310)
Q Consensus         2 ~~~~~~~~~~~r~paEwe~~~~~~lawP~~~~~~~~w~~~l~~~~~~~~~la~aia~~e~V~v~v~~~~~~~a~~~l~-~   80 (310)
                      .+++||+..+||||||||||+++||+||   |+.++|+.++.+||++|+++|++||+||+|+|+|+.++++.|+++|+ .
T Consensus         5 ~~~~tpr~~gf~mpaEwep~~a~~m~wP---~~~~~W~~~l~~aq~~f~~~~~aIarfe~V~l~V~~~~~~~a~a~l~~~   81 (346)
T COG2957           5 PFKGTPRLLGFRMPAEWEPQEAIWMAWP---HRPDDWRGHLKPAQQAFAALAKAIARFERVLLCVPDDDLEDARARLDDA   81 (346)
T ss_pred             CCCCCCchhcccCCcccCchhceeEecc---CCccchhhhHHHHHHHHHHHHHHHhccceEEEEechHHHHHHHhhcCCC
Confidence            3578999999999999999999999999   99999999999999999999999999999999999999989999998 7


Q ss_pred             CeEEEEeCCCCccccccCceEEEcCCCCCCCCCCCceeEeeeeeccCCCCCCCCCCCCchhHHHHHHHHHhcC-CCcccc
Q 021621           81 NIRVIEMSMNGSWFRDTGPTIVVNKSSASSGAQAPKVAGIDWNFNSWGGVDDGCYRDWSLDLQVARKILSTER-LPRFPH  159 (310)
Q Consensus        81 ~v~~~~~~~~D~W~RD~gPi~v~~~~g~~~~~~~~~~~~vdf~FN~WG~k~~~~~~~~~~D~~v~~~l~~~~g-~~~~~~  159 (310)
                      +|+++++++||+|+||+||+||++++|+        +++|||+||+|||    .|++|+.|++|+.++++..+ .++.+.
T Consensus        82 ~V~~~~i~~nDtW~RDtGP~~~i~~~g~--------~~a~d~~FNaWGG----lkf~~e~Dd~Va~k~~~~~~k~~~~~~  149 (346)
T COG2957          82 NVEIVRIDTNDTWLRDTGPTIVINDKGD--------LRAVDFGFNAWGG----LKFPWELDDQVASKLAELLFKAPLKTD  149 (346)
T ss_pred             ceEEEEccCCCcHhhccCCcEEecCCCc--------EEEecceeccccc----cccccccchHHHHHHHHhhccCccccC
Confidence            9999999999999999999999999998        9999999999997    36899999999999999876 667788


Q ss_pred             cceecCCceEECCCccEEEecceecCCCCCCCCCHHHHHHHHHHHhCCceEEEcCCCccC--------------------
Q 021621          160 SMVLEGGSIHVDGEGTCLTTEECLLNKNRNPHLTKGQIENELKAYLGVMKIIWLPRGLFG--------------------  219 (310)
Q Consensus       160 ~lvlEGG~ie~dG~GtlltTe~~lln~nRNp~lsk~eie~~Lk~~LGv~kvIWL~~G~~g--------------------  219 (310)
                      ++|||||+|++||+||+|||++||||+||||+|||++||..|+++||++|||||++|+.|                    
T Consensus       150 ~fiLEGGsi~~dG~Gt~LTT~~CLLn~nRNPhl~~~~ie~~L~e~Lg~kkvlWL~~Gl~~D~TDgHiDtlarFv~p~~iv  229 (346)
T COG2957         150 PFILEGGSIHSDGEGTLLTTEQCLLNDNRNPHLNQEGIENKLKEYLGAKKVLWLEYGLKNDDTDGHIDTLARFVAPGEIV  229 (346)
T ss_pred             CeeeecCceeecCceeEEeehHhhcCCCCCCCcCHHHHHHHHHHHhCccEEEEccCCCcCCcccchhhhhhhhcCCCeEE
Confidence            999999999999999999999999999999999999999999999999999999999877                    


Q ss_pred             ----------------------------------eecCCCCccc--cCCccccccceeEEEECCeEEeccCCCchhHHHH
Q 021621          220 ----------------------------------MIHDGEAKPR--LAGTRLAASYVNFYIANGGIITPQFGDKKWDGEA  263 (310)
Q Consensus       220 ----------------------------------l~~~p~~~~~--~~g~~l~asY~Nfli~N~~VivP~fg~~~~D~~A  263 (310)
                                                        |.++|-|.+.  ++|+|++|||+||||+|++||||+|+|+ +|+.|
T Consensus       230 ~~~~dde~Dp~y~~~q~~~~~L~~~~d~~G~~~~l~~Lp~P~~~~~e~~~rL~aSY~NFlI~N~avIvP~y~D~-~D~~a  308 (346)
T COG2957         230 LSWCDDENDPHYAALQAMLEELKELRDAKGRPLKLHKLPIPKPVTDEDGERLPASYVNFLIINGAVIVPQYDDP-NDALA  308 (346)
T ss_pred             EEecCCCCChhHHHHHHHHHHHHhccccCCCeeEEEEcCCCcccccccCCCCcccceeEEEecCeEEeeccCCc-chHHH
Confidence                                              2334434332  4589999999999999999999999999 99999


Q ss_pred             HHHHHHhCCCCEEEecCchhHHhhCCCceeeecCccCCC
Q 021621          264 VRVLSQAFPKYEVVGIERAREIVLGGGNIHCITQQQPAI  302 (310)
Q Consensus       264 l~~l~~~fP~r~Vv~I~~~~~l~~~GG~iHCiT~q~P~~  302 (310)
                      +++|+++||+|+||||+ |++|++|||||||||||+|+.
T Consensus       309 ~~~L~~~fP~reVVGVp-~r~il~ggGs~HCiTqQ~p~~  346 (346)
T COG2957         309 LDVLQQAFPGREVVGVP-AREILLGGGSLHCITQQIPAG  346 (346)
T ss_pred             HHHHHHhCCCCeEeccc-cHHheecCCceEEEeecccCC
Confidence            99999999999999999 999999999999999999974

>PLN02690 Agmatine deiminase Back     alignment and domain information
>PRK13551 agmatine deiminase; Provisional Back     alignment and domain information
>TIGR03380 agmatine_aguA agmatine deiminase Back     alignment and domain information
>PF04371 PAD_porph: Porphyromonas-type peptidyl-arginine deiminase; InterPro: IPR007466 Peptidyl-arginine deiminase (PAD) enzymes catalyse the deimination of the guanidino group from carboxy-terminal arginine residues of various peptides to produce ammonia Back     alignment and domain information
>PF02274 Amidinotransf: Amidinotransferase; InterPro: IPR003198 This family contains glycine and inosamine amidinotransferases, enzymes which are involved in creatine and streptomycin biosynthesis respectively Back     alignment and domain information
>COG1834 N-Dimethylarginine dimethylaminohydrolase [Amino acid transport and metabolism] Back     alignment and domain information
>PRK01388 arginine deiminase; Provisional Back     alignment and domain information
>TIGR01078 arcA arginine deiminase Back     alignment and domain information
>COG2235 ArcA Arginine deiminase [Amino acid transport and metabolism] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query310
3h7k_A383 Crystal Structure Of Arabidopsis Thaliana Agmatine 9e-89
3h7k_A383 Crystal Structure Of Arabidopsis Thaliana Agmatine 6e-33
1vkp_A383 X-Ray Structure Of Gene Product From Arabidopsis Th 1e-88
1vkp_A383 X-Ray Structure Of Gene Product From Arabidopsis Th 3e-34
3h7c_X383 Crystal Structure Of Arabidopsis Thaliana Agmatine 1e-88
3h7c_X383 Crystal Structure Of Arabidopsis Thaliana Agmatine 3e-34
2jer_A389 Agmatine Deiminase Of Enterococcus Faecalis Catalyz 2e-51
2jer_A389 Agmatine Deiminase Of Enterococcus Faecalis Catalyz 4e-12
2ewo_A377 X-Ray Structure Of Putative Agmatine Deiminase Q8dw 6e-50
2ewo_A377 X-Ray Structure Of Putative Agmatine Deiminase Q8dw 5e-16
1xkn_A355 Crystal Structure Of The Putative Peptidyl-Arginine 2e-24
1xkn_A355 Crystal Structure Of The Putative Peptidyl-Arginine 8e-12
1zbr_A349 Crystal Structure Of The Putative Arginine Deiminas 1e-22
3hvm_A330 Agmatine Deiminase From Helicobacter Pylori Length 2e-17
3hvm_A330 Agmatine Deiminase From Helicobacter Pylori Length 5e-06
2cmu_A342 Crystal Structure Of A Putative Peptidyl-Arginine D 2e-16
2cmu_A342 Crystal Structure Of A Putative Peptidyl-Arginine D 1e-05
>pdb|3H7K|A Chain A, Crystal Structure Of Arabidopsis Thaliana Agmatine Deiminase Complexed With A Covalently Bound Reaction Intermediate Length = 383 Back     alignment and structure 
Iteration: 1

 Score =  323 bits (827), Expect = 9e-89,   Method: Compositional matrix adjust.
 Identities = 151/218 (69%), Positives = 170/218 (77%), Gaps = 3/218 (1%)
Query: 2   EMNGTPALHGYLMPAEWEPHSQCWMGWPVRYERLDNWRDDALHAQRVFAKVATAISKFEP 61
           E   +PA HGY  PAEW+ H+Q W+GWP   ER DNWR +AL AQRVFA VA AISKFEP
Sbjct: 3   ESRESPAEHGYYXPAEWDSHAQTWIGWP---ERQDNWRHNALPAQRVFAGVAKAISKFEP 59
Query: 62  VTVCASAAQWENARSQLPENIRVIEMSMNGSWFRDTGPTIVVNKSSASSGAQAPKVAGID 121
           VTVCAS AQWENAR QLPE+IRV+E S N SWFRD+GPT +V K      +    +AGID
Sbjct: 60  VTVCASPAQWENARKQLPEDIRVVEXSXNDSWFRDSGPTFIVRKRPVKLSSLNRNIAGID 119
Query: 122 WNFNSWGGVDDGCYRDWSLDLQVARKILSTERLPRFPHSMVLEGGSIHVDGEGTCLTTEE 181
           WNFN+WGG +DGCY DWS DL V+RKIL+ ER+PRF HS +LEGGSIHVDGEGTCL TEE
Sbjct: 120 WNFNAWGGANDGCYNDWSHDLLVSRKILALERIPRFQHSXILEGGSIHVDGEGTCLVTEE 179
Query: 182 CLLNKNRNPHLTKGQIENELKAYLGVMKIIWLPRGLFG 219
           CLLNKNRNPH +K QIE ELK YLGV   IWLPRGL+G
Sbjct: 180 CLLNKNRNPHXSKEQIEEELKKYLGVQSFIWLPRGLYG 217
>pdb|3H7K|A Chain A, Crystal Structure Of Arabidopsis Thaliana Agmatine Deiminase Complexed With A Covalently Bound Reaction Intermediate Length = 383 Back     alignment and structure
>pdb|1VKP|A Chain A, X-Ray Structure Of Gene Product From Arabidopsis Thaliana At5g08170, Agmatine Iminohydrolase Length = 383 Back     alignment and structure
>pdb|1VKP|A Chain A, X-Ray Structure Of Gene Product From Arabidopsis Thaliana At5g08170, Agmatine Iminohydrolase Length = 383 Back     alignment and structure
>pdb|3H7C|X Chain X, Crystal Structure Of Arabidopsis Thaliana Agmatine Deiminase From Cell Free Expression Length = 383 Back     alignment and structure
>pdb|3H7C|X Chain X, Crystal Structure Of Arabidopsis Thaliana Agmatine Deiminase From Cell Free Expression Length = 383 Back     alignment and structure
>pdb|2JER|A Chain A, Agmatine Deiminase Of Enterococcus Faecalis Catalyzing Its Reaction. Length = 389 Back     alignment and structure
>pdb|2JER|A Chain A, Agmatine Deiminase Of Enterococcus Faecalis Catalyzing Its Reaction. Length = 389 Back     alignment and structure
>pdb|2EWO|A Chain A, X-Ray Structure Of Putative Agmatine Deiminase Q8dw17, Northeast Structural Genomics Target Smr6. Length = 377 Back     alignment and structure
>pdb|2EWO|A Chain A, X-Ray Structure Of Putative Agmatine Deiminase Q8dw17, Northeast Structural Genomics Target Smr6. Length = 377 Back     alignment and structure
>pdb|1XKN|A Chain A, Crystal Structure Of The Putative Peptidyl-Arginine Deiminase From Chlorobium Tepidum, Nesg Target Ctr21 Length = 355 Back     alignment and structure
>pdb|1XKN|A Chain A, Crystal Structure Of The Putative Peptidyl-Arginine Deiminase From Chlorobium Tepidum, Nesg Target Ctr21 Length = 355 Back     alignment and structure
>pdb|1ZBR|A Chain A, Crystal Structure Of The Putative Arginine Deiminase From Porphyromonas Gingivalis, Northeast Structural Genomics Target Pgr3 Length = 349 Back     alignment and structure
>pdb|3HVM|A Chain A, Agmatine Deiminase From Helicobacter Pylori Length = 330 Back     alignment and structure
>pdb|3HVM|A Chain A, Agmatine Deiminase From Helicobacter Pylori Length = 330 Back     alignment and structure
>pdb|2CMU|A Chain A, Crystal Structure Of A Putative Peptidyl-Arginine Deiminase Length = 342 Back     alignment and structure
>pdb|2CMU|A Chain A, Crystal Structure Of A Putative Peptidyl-Arginine Deiminase Length = 342 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query310
1zbr_A349 AAQ65385, conserved hypothetical protein; alpha-be 1e-81
3h7c_X383 Agmatine deiminase; structural genomics, protein s 3e-79
3h7c_X383 Agmatine deiminase; structural genomics, protein s 8e-37
2jer_A389 Agmatine deiminase; hydrolase, tetramer, AGDI, 5- 2e-77
1xkn_A355 Putative peptidyl-arginine deiminase; alpha-beta p 1e-73
2ewo_A377 Putative agmatine deiminase; Q8DW17, SMR6, X-RAY, 1e-69
3hvm_A330 Agmatine deiminase; hydrolase; 2.10A {Helicobacter 7e-69
>1zbr_A AAQ65385, conserved hypothetical protein; alpha-beta protein., structural genomics, PSI, protein struc initiative; 2.60A {Porphyromonas gingivalis} SCOP: d.126.1.6 Length = 349 Back     alignment and structure
 Score =  249 bits (638), Expect = 1e-81
 Identities = 75/347 (21%), Positives = 119/347 (34%), Gaps = 70/347 (20%)

Query: 12  YLMPAEWEPHSQCWMGWPVRYERLDNWRDDALHAQRVFAKVATAISKFEPVTVCASAAQ- 70
            L   EW P     + WP       +W       +  F ++ATAI + E + V     + 
Sbjct: 4   RLFLPEWAPQEAVQLTWPHDR---TDWAYMLDEVETCFVRIATAILRHERLIVVCPDRKR 60

Query: 71  -WENARSQLPENIRVIEMSMNGSWFRDTGPTIVVNKSSASSGAQAPKVAGIDWNFNSWGG 129
            +     +L   +   E+  N +W RD G   ++            +    D+ FN WG 
Sbjct: 61  VFGLLPPELHHRLYCFELPSNDTWARDHGGISLLADG---------RPMIADFAFNGWGM 111

Query: 130 VDDGCYRDWSLDLQVARKILSTERLPRFPHSMVLEGGSIHVDGEGTCLTTEECLLNKNRN 189
                + +       A  + +         + VLEGG++  DGEGT LTT+ CL   NRN
Sbjct: 112 KFAAHHDNLITRRLHALGLFAEGVTLDNRLAFVLEGGALETDGEGTLLTTDSCLFEPNRN 171

Query: 190 PHLTKGQIENELKAYLGVMKIIWLPRGLFGMIH-----DGEAKPRLAGTRLAASYVN--- 241
             L++  I + LK  LGV +++ L  G           D  A+     T +     +   
Sbjct: 172 AGLSRTAIIDTLKESLGVSRVLSLRHGALAGDDTDGHIDTLARFVDTRTIVYVRSEDPSD 231

Query: 242 ---------------FYIANGGIIT----PQFGDKKWDGE-------------------- 262
                              +G        P         +                    
Sbjct: 232 EHYSDLTAMEQELKELRRPDGQPYRLVPLPMAEALYDGADRLPATYANFLIINGAVLVPT 291

Query: 263 --------AVRVLSQAFPKYEVVGIERAREIVLGGGNIHCITQQQPA 301
                   A+ V+   FP  EV+GI+  R +V   G++HC+T Q P 
Sbjct: 292 YDSHLDAVALSVMQGLFPDREVIGID-CRPLVKQHGSLHCVTMQYPQ 337
>3h7c_X Agmatine deiminase; structural genomics, protein structure initiative, center for eukaryotic structural genomics, CESG; HET: MSE 211 1PE; 1.50A {Arabidopsis thaliana} PDB: 1vkp_A* 2q3u_A* 3h7k_A* Length = 383 Back     alignment and structure
>3h7c_X Agmatine deiminase; structural genomics, protein structure initiative, center for eukaryotic structural genomics, CESG; HET: MSE 211 1PE; 1.50A {Arabidopsis thaliana} PDB: 1vkp_A* 2q3u_A* 3h7k_A* Length = 383 Back     alignment and structure
>2jer_A Agmatine deiminase; hydrolase, tetramer, AGDI, 5- fold pseudosymmetric structure, agmatine degradation pathway, covalent amidino adduct; HET: AGT; 1.65A {Enterococcus faecalis} SCOP: d.126.1.6 Length = 389 Back     alignment and structure
>1xkn_A Putative peptidyl-arginine deiminase; alpha-beta protein, NESG, structural genomics, protein struc initiative, PSI; 1.60A {Chlorobium tepidum} SCOP: d.126.1.6 Length = 355 Back     alignment and structure
>2ewo_A Putative agmatine deiminase; Q8DW17, SMR6, X-RAY, structural genomics, PSI, protein structure initiative; 2.90A {Streptococcus mutans} SCOP: d.126.1.6 Length = 377 Back     alignment and structure
>3hvm_A Agmatine deiminase; hydrolase; 2.10A {Helicobacter pylori} PDB: 2cmu_A Length = 330 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query310
3h7c_X383 Agmatine deiminase; structural genomics, protein s 100.0
3hvm_A330 Agmatine deiminase; hydrolase; 2.10A {Helicobacter 100.0
2jer_A389 Agmatine deiminase; hydrolase, tetramer, AGDI, 5- 100.0
2ewo_A377 Putative agmatine deiminase; Q8DW17, SMR6, X-RAY, 100.0
1xkn_A355 Putative peptidyl-arginine deiminase; alpha-beta p 100.0
1zbr_A349 AAQ65385, conserved hypothetical protein; alpha-be 100.0
2ci1_A275 NG, NG-dimethylarginine dimethylaminohydrolase 1; 99.88
1h70_A255 NG, NG-dimethylarginine dimethylaminohydrolase; DD 99.87
1jdw_A423 L-arginine\:glycine amidinotransferase; creatine b 99.73
1bwd_A348 ADT, protein (inosamine-phosphate amidinotransfera 99.63
2a9g_A418 Arginine deiminase; arginine degradation pathway, 99.35
3i4a_A308 N(G),N(G)-dimethylarginine dimethylaminohydrolase 99.33
4e4j_A433 Arginine deiminase; L-arginine, L-citrulline, NH3, 97.49
1s9r_A410 Arginine deiminase; hydrolase, 5-fold pseudo-symme 96.33
>3h7c_X Agmatine deiminase; structural genomics, protein structure initiative, center for eukaryotic structural genomics, CESG; HET: MSE 211 1PE; 1.50A {Arabidopsis thaliana} SCOP: d.126.1.6 PDB: 1vkp_A* 2q3u_A* 3h7k_A* Back     alignment and structure
Probab=100.00  E-value=1.5e-100  Score=741.58  Aligned_cols=299  Identities=73%  Similarity=1.247  Sum_probs=270.0

Q ss_pred             CCCCCCCCCccCCCCCccceeEEEecCCCCCCCCCchhhhHHHHHHHHHHHHHHHcCccEEEEeCchhHHHHHhhCCCCe
Q 021621            3 MNGTPALHGYLMPAEWEPHSQCWMGWPVRYERLDNWRDDALHAQRVFAKVATAISKFEPVTVCASAAQWENARSQLPENI   82 (310)
Q Consensus         3 ~~~~~~~~~~r~paEwe~~~~~~lawP~~~~~~~~w~~~l~~~~~~~~~la~aia~~e~V~v~v~~~~~~~a~~~l~~~v   82 (310)
                      ..++|++.+||||||||||++|||+||   |+.++|+..++++|++|++||++||+||||+|+|++++.+.|+++|+.+|
T Consensus         4 ~~~~p~~~~~rmPaEweph~~~wm~WP---~~~~~W~~~l~~a~~~~~~ia~aIa~~EpV~i~v~~~~~~~a~~~l~~~v   80 (383)
T 3h7c_X            4 SRESPAEHGYYMPAEWDSHAQTWIGWP---ERQDNWRHNALPAQRVFAGVAKAISKFEPVTVCASPAQWENARKQLPEDI   80 (383)
T ss_dssp             CSSCTGGGTCBCCCTTSCEEEEEECCC---CCTTTSTGGGHHHHHHHHHHHHHHHTTSCEEEEECGGGHHHHHHHSCTTS
T ss_pred             CCCCcccCCcccCCCcChhhcEEEEeC---CCCcchhHHHHHHHHHHHHHHHHHhcCCcEEEEECHHHHHHHHHhccCCc
Confidence            467899999999999999999999999   99999999999999999999999999999999999999889999999999


Q ss_pred             EEEEeCCCCccccccCceEEEcCCCCCCCCCCCceeEeeeeeccCCCCCCCCCCCCchhHHHHHHHHHhcCCCcccccce
Q 021621           83 RVIEMSMNGSWFRDTGPTIVVNKSSASSGAQAPKVAGIDWNFNSWGGVDDGCYRDWSLDLQVARKILSTERLPRFPHSMV  162 (310)
Q Consensus        83 ~~~~~~~~D~W~RD~gPi~v~~~~g~~~~~~~~~~~~vdf~FN~WG~k~~~~~~~~~~D~~v~~~l~~~~g~~~~~~~lv  162 (310)
                      +|+++++||+|+||+||+||++++|...+...+++++|||+||+||+|++++|++|++|++++++|++..|++++.++||
T Consensus        81 ~~~~~~~nD~W~RD~GP~fv~~~~g~~~~~~~~~~~~vdf~FNgWGgk~~~~y~~~~~D~~va~~v~~~~g~~~~~~~lV  160 (383)
T 3h7c_X           81 RVVEMSMNDSWFRDSGPTFIVRKRPVKLSSLNRNIAGIDWNFNAWGGANDGCYNDWSHDLLVSRKILALERIPRFQHSMI  160 (383)
T ss_dssp             EEEECCCSSCCHHHHSCEEEECCC-------CCSEEEEEEECCTTTHHHHCSBSCCTTHHHHHHHHHHHHTCCEEEEEEE
T ss_pred             EEEEcCCCCchhhccCceEEEeCCCccccccccceEEEcceeecCcCcccccCCCCccHHHHHHHHHHHhCCCcccCCee
Confidence            99999999999999999999987651000011128999999999999877778899999999999999999999999999


Q ss_pred             ecCCceEECCCccEEEecceecCCCCCCCCCHHHHHHHHHHHhCCceEEEcCCCccC-----------------------
Q 021621          163 LEGGSIHVDGEGTCLTTEECLLNKNRNPHLTKGQIENELKAYLGVMKIIWLPRGLFG-----------------------  219 (310)
Q Consensus       163 lEGG~ie~dG~GtlltTe~~lln~nRNp~lsk~eie~~Lk~~LGv~kvIWL~~G~~g-----------------------  219 (310)
                      +||||||+||+|||||||+||||+||||+|||+|||++||++||++||||||+|+.|                       
T Consensus       161 lEGGsIe~DG~GTlltTe~cLLn~nRNP~lsk~eIE~~L~~~LGv~kvIWL~~Gl~gDddTdgHID~larFv~pg~Vl~~  240 (383)
T 3h7c_X          161 LEGGSIHVDGEGTCLVTEECLLNKNRNPHMSKEQIEEELKKYLGVQSFIWLPRGLYGDEDTNGHIDNMCCFARPGVVLLS  240 (383)
T ss_dssp             CCGGGEEECSSSEEEEEHHHHTCTTTCTTSCHHHHHHHHHHHHCCCEEEEESCCCTTCGGGTCCGGGTEEEEETTEEEEE
T ss_pred             ecCCcEEECCCceEEEEhhhccCCCCCCCCCHHHHHHHHHHHhCCcEEEEeCCCcCCCCCcCcceeeeEEecCCCEEEEE
Confidence            999999999999999999999999999999999999999999999999999998755                       


Q ss_pred             --------------------------------eecCCCCcc-------------------ccCCccccccceeEEEECCe
Q 021621          220 --------------------------------MIHDGEAKP-------------------RLAGTRLAASYVNFYIANGG  248 (310)
Q Consensus       220 --------------------------------l~~~p~~~~-------------------~~~g~~l~asY~Nfli~N~~  248 (310)
                                                      |+++|.|.+                   |.+|+|++|||+||||+|++
T Consensus       241 ~~~d~~dp~y~~~~~~~~~L~~~tda~Gr~~~i~~lp~P~~~~~~~~e~~g~~~~~~~~~r~~g~rl~aSY~Nfli~Ng~  320 (383)
T 3h7c_X          241 WTDDETDPQYERSVEALSVLSNSIDARGRKIQVIKLYIPEPLYMTEEESSGITQDGEAIPRLAGTRLAASYVNFYIANGG  320 (383)
T ss_dssp             ECCCTTSHHHHHHHHHHHHHHTCBCTTSCBCEEEEEECCSCCBCCHHHHHTSCCCSSBCCCCTTCBCCCCTTCCEEETTE
T ss_pred             ccCCCCCcCHHHHHHHHHHHHhhhhccCCceEEEEecCCCccccchhhccccccccccccccCCCcccccccceeeECCE
Confidence                                            222333322                   23588999999999999999


Q ss_pred             EEeccCCCchhHHHHHHHHHHhCCCCEEEecCchhHHhhCCCceeeecCccCCCCc
Q 021621          249 IITPQFGDKKWDGEAVRVLSQAFPKYEVVGIERAREIVLGGGNIHCITQQQPAIPT  304 (310)
Q Consensus       249 VivP~fg~~~~D~~Al~~l~~~fP~r~Vv~I~~~~~l~~~GG~iHCiT~q~P~~~~  304 (310)
                      ||||+||++++|++|+++||++||+|+||+|++|++|+++||||||+|||+|+...
T Consensus       321 VivP~fgd~~~D~~A~~~l~~~fP~R~Vv~I~~~~~i~~ggG~iHCiTqQ~P~~~~  376 (383)
T 3h7c_X          321 IIAPQFGDPIRDKEAIRVLSDTFPHHSVVGIENAREIVLAGGNIHCITQQQPAEPT  376 (383)
T ss_dssp             EEEECCCCTTHHHHHHHHHHHHCTTSEEEEETTTHHHHTTTCCHHHHEEEEECCCC
T ss_pred             EEEecCCCcccHHHHHHHHHHHCCCCEEEeCccHHHHHhcCCcceEcCCccccCcc
Confidence            99999999768999999999999999999997799999999999999999998543
>3hvm_A Agmatine deiminase; hydrolase; 2.10A {Helicobacter pylori} SCOP: d.126.1.6 PDB: 2cmu_A Back     alignment and structure
>2jer_A Agmatine deiminase; hydrolase, tetramer, AGDI, 5- fold pseudosymmetric structure, agmatine degradation pathway, covalent amidino adduct; HET: AGT; 1.65A {Enterococcus faecalis} SCOP: d.126.1.6 Back     alignment and structure
>2ewo_A Putative agmatine deiminase; Q8DW17, SMR6, X-RAY, structural genomics, PSI, protein structure initiative; 2.90A {Streptococcus mutans} SCOP: d.126.1.6 Back     alignment and structure
>1xkn_A Putative peptidyl-arginine deiminase; alpha-beta protein, NESG, structural genomics, protein struc initiative, PSI; 1.60A {Chlorobium tepidum} SCOP: d.126.1.6 Back     alignment and structure
>1zbr_A AAQ65385, conserved hypothetical protein; alpha-beta protein., structural genomics, PSI, protein struc initiative; 2.60A {Porphyromonas gingivalis} SCOP: d.126.1.6 Back     alignment and structure
>2ci1_A NG, NG-dimethylarginine dimethylaminohydrolase 1; NOS regulation, S-nitrosylation, zinc, MMA, ADMA, acetylation, metal-binding; HET: KOR K1R CIT; 1.08A {Bos taurus} PDB: 2c6z_A* 2ci3_A 2ci4_A 2ci5_A* 2ci6_A 2ci7_A 2jaj_A* 2jai_A* Back     alignment and structure
>1h70_A NG, NG-dimethylarginine dimethylaminohydrolase; DDAH, nitric oxide synthase inhibitor; HET: CIR; 1.8A {Pseudomonas aeruginosa} SCOP: d.126.1.3 PDB: 3rhy_A 3bpb_A* Back     alignment and structure
>1jdw_A L-arginine\:glycine amidinotransferase; creatine biosynthesis, catalytic triad, reaction mechanism, novel fold, fivefold pseudosymmetry; 1.90A {Homo sapiens} SCOP: d.126.1.2 PDB: 2jdw_A 3jdw_A* 4jdw_A* 8jdw_A 5jdw_A 6jdw_A* 1jdx_A* 7jdw_A 9jdw_A* 2jdx_A Back     alignment and structure
>1bwd_A ADT, protein (inosamine-phosphate amidinotransferase); streptomycin; 3.10A {Streptomyces griseus} SCOP: d.126.1.2 Back     alignment and structure
>2a9g_A Arginine deiminase; arginine degradation pathway, catalyti mechanism, hydrolase; HET: ARG; 2.30A {Pseudomonas aeruginosa} SCOP: d.126.1.4 PDB: 1rxx_A 2abr_A* 2aci_A 2aaf_A* Back     alignment and structure
>3i4a_A N(G),N(G)-dimethylarginine dimethylaminohydrolase 1; DDAH, nitric oxide synthase regulation, acetylation, metal-binding, zinc; HET: LN5; 1.90A {Homo sapiens} PDB: 3i2e_A* 3p8e_A* 3p8p_A* Back     alignment and structure
>4e4j_A Arginine deiminase; L-arginine, L-citrulline, NH3, hydrolase; 2.30A {Mycoplasma penetrans} Back     alignment and structure
>1s9r_A Arginine deiminase; hydrolase, 5-fold pseudo-symmetric domain, 5- helix bundle domain, raction intermediate; HET: ARG; 1.60A {Mycoplasma arginini} SCOP: d.126.1.4 PDB: 1lxy_A* Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 310
d1vkpa_372 d.126.1.6 (A:) Agmatine iminohydrolase {Thale-cres 6e-78
d1vkpa_372 d.126.1.6 (A:) Agmatine iminohydrolase {Thale-cres 4e-37
d1xkna_353 d.126.1.6 (A:) Putative peptidyl-arginine deiminas 1e-69
d2jera1364 d.126.1.6 (A:2-365) Agmatine iminohydrolase {Enter 2e-69
d1zbra1339 d.126.1.6 (A:3-341) Putative peptidyl-arginine dei 4e-69
d2ewoa1369 d.126.1.6 (A:2-370) Agmatine iminohydrolase {Strep 9e-64
d2ewoa1369 d.126.1.6 (A:2-370) Agmatine iminohydrolase {Strep 3e-31
d2cmua1330 d.126.1.6 (A:3-332) Putative peptidyl-arginine dei 5e-61
>d1vkpa_ d.126.1.6 (A:) Agmatine iminohydrolase {Thale-cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 372 Back     information, alignment and structure

class: Alpha and beta proteins (a+b)
fold: Pentein, beta/alpha-propeller
superfamily: Pentein
family: Porphyromonas-type peptidylarginine deiminase
domain: Agmatine iminohydrolase
species: Thale-cress (Arabidopsis thaliana) [TaxId: 3702]

 Score =  240 bits (612), Expect = 6e-78
 Identities = 154/214 (71%), Positives = 174/214 (81%), Gaps = 3/214 (1%)

Query: 6   TPALHGYLMPAEWEPHSQCWMGWPVRYERLDNWRDDALHAQRVFAKVATAISKFEPVTVC 65
           +PA HGY MPAEW+ H+Q W+GWP   ER DNWR +AL AQRVFA VA AISKFEPVTVC
Sbjct: 3   SPAEHGYYMPAEWDSHAQTWIGWP---ERQDNWRHNALPAQRVFAGVAKAISKFEPVTVC 59

Query: 66  ASAAQWENARSQLPENIRVIEMSMNGSWFRDTGPTIVVNKSSASSGAQAPKVAGIDWNFN 125
           AS AQWENAR QLPE+IRV+EMSMN SWFRD+GPT +V K      +    +AGIDWNFN
Sbjct: 60  ASPAQWENARKQLPEDIRVVEMSMNDSWFRDSGPTFIVRKRPVKLSSLNRNIAGIDWNFN 119

Query: 126 SWGGVDDGCYRDWSLDLQVARKILSTERLPRFPHSMVLEGGSIHVDGEGTCLTTEECLLN 185
           +WGG +DGCY DWS DL V+RKIL+ ER+PRF HSM+LEGGSIHVDGEGTCL TEECLLN
Sbjct: 120 AWGGANDGCYNDWSHDLLVSRKILALERIPRFQHSMILEGGSIHVDGEGTCLVTEECLLN 179

Query: 186 KNRNPHLTKGQIENELKAYLGVMKIIWLPRGLFG 219
           KNRNPH++K QIE ELK YLGV   IWLPRGL+G
Sbjct: 180 KNRNPHMSKEQIEEELKKYLGVQSFIWLPRGLYG 213
>d1vkpa_ d.126.1.6 (A:) Agmatine iminohydrolase {Thale-cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 372 Back     information, alignment and structure
>d1xkna_ d.126.1.6 (A:) Putative peptidyl-arginine deiminase {Chlorobium tepidum [TaxId: 1097]} Length = 353 Back     information, alignment and structure
>d2jera1 d.126.1.6 (A:2-365) Agmatine iminohydrolase {Enterococcus faecalis [TaxId: 1351]} Length = 364 Back     information, alignment and structure
>d1zbra1 d.126.1.6 (A:3-341) Putative peptidyl-arginine deiminase {Porphyromonas gingivalis [TaxId: 837]} Length = 339 Back     information, alignment and structure
>d2ewoa1 d.126.1.6 (A:2-370) Agmatine iminohydrolase {Streptococcus mutans [TaxId: 1309]} Length = 369 Back     information, alignment and structure
>d2ewoa1 d.126.1.6 (A:2-370) Agmatine iminohydrolase {Streptococcus mutans [TaxId: 1309]} Length = 369 Back     information, alignment and structure
>d2cmua1 d.126.1.6 (A:3-332) Putative peptidyl-arginine deiminase {Helicobacter pylori J99 [TaxId: 85963]} Length = 330 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query310
d2jera1364 Agmatine iminohydrolase {Enterococcus faecalis [Ta 100.0
d1vkpa_372 Agmatine iminohydrolase {Thale-cress (Arabidopsis 100.0
d2ewoa1369 Agmatine iminohydrolase {Streptococcus mutans [Tax 100.0
d1xkna_353 Putative peptidyl-arginine deiminase {Chlorobium t 100.0
d2cmua1330 Putative peptidyl-arginine deiminase {Helicobacter 100.0
d1zbra1339 Putative peptidyl-arginine deiminase {Porphyromona 100.0
d1h70a_255 Dimethylarginine dimethylaminohydrolase DDAH {Pseu 98.1
d1s9ra_409 Arginine deiminase {Mycoplasma arginini [TaxId: 20 98.05
d1rxxa_412 Arginine deiminase {Pseudomonas aeruginosa [TaxId: 97.53
d1bwda_348 L-arginine: inosamine-phosphate amidinotransferase 97.51
d1jdwa_360 L-arginine: glycine amidinotransferase {Human (Hom 97.0
>d2jera1 d.126.1.6 (A:2-365) Agmatine iminohydrolase {Enterococcus faecalis [TaxId: 1351]} Back     information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: Pentein, beta/alpha-propeller
superfamily: Pentein
family: Porphyromonas-type peptidylarginine deiminase
domain: Agmatine iminohydrolase
species: Enterococcus faecalis [TaxId: 1351]

Probab=100.00  E-value=1.6e-95  Score=703.26  Aligned_cols=288  Identities=47%  Similarity=0.848  Sum_probs=269.0

Q ss_pred             CCCCCCCCCCCccCCCCCccceeEEEecCCCCCCCCCchhhhHHHHHHHHHHHHHHHcCccEEEEeCchhHHHHHhhCCC
Q 021621            1 MEMNGTPALHGYLMPAEWEPHSQCWMGWPVRYERLDNWRDDALHAQRVFAKVATAISKFEPVTVCASAAQWENARSQLPE   80 (310)
Q Consensus         1 ~~~~~~~~~~~~r~paEwe~~~~~~lawP~~~~~~~~w~~~l~~~~~~~~~la~aia~~e~V~v~v~~~~~~~a~~~l~~   80 (310)
                      +++++||++.|||||||||||++|||+||   |+.++|+..+.+++++|++||++||++|||+|+|++++.+.+++.+.+
T Consensus         3 ~~~~~tP~~~g~rmPaEwep~~~~~l~wP---~~~~~w~~~~~~~~~~~~~i~~~ia~~e~V~v~~~~~~~~~~~~~~~~   79 (364)
T d2jera1           3 RIVGSTPKQDGFRMPGEFEPQEKVWMIWP---ERPDNWRDGGKPVQEAFTNVAKAISQFTPMNVVVSQQQFQNCRRQLPP   79 (364)
T ss_dssp             BCCSCCHHHHTCBCCCTTSCEEEEEEECC---CCTTTSGGGGHHHHHHHHHHHHHHHTTSCEEEEECTTTHHHHHHHSCT
T ss_pred             cccCCCccccCCCcCCCcchhheEEEEcC---CCCcchhhHHHHHHHHHHHHHHHHhCCCeEEEEECcHHHHHHHHhCcc
Confidence            46899999999999999999999999999   999999999999999999999999999999999999999999999999


Q ss_pred             CeEEEEeCCCCccccccCceEEEcCCCCCCCCCCCceeEeeeeeccCCCCCCCCCCCCchhHHHHHHHHHhcCCCccc-c
Q 021621           81 NIRVIEMSMNGSWFRDTGPTIVVNKSSASSGAQAPKVAGIDWNFNSWGGVDDGCYRDWSLDLQVARKILSTERLPRFP-H  159 (310)
Q Consensus        81 ~v~~~~~~~~D~W~RD~gPi~v~~~~g~~~~~~~~~~~~vdf~FN~WG~k~~~~~~~~~~D~~v~~~l~~~~g~~~~~-~  159 (310)
                      +|+++++++||+|+||+||+||.+++|+        +++|||+||+||+|++++|++|..|++++.++++.++++.+. +
T Consensus        80 ~v~~~~~~~dD~W~RD~GPi~v~~~~g~--------~~~vdf~FN~wG~k~~~~~~~~~~D~~~~~~ia~~~~~~~~~~~  151 (364)
T d2jera1          80 EITVYEMSNNDAWVRDCGPSFVINDHGE--------IRGVDWTFNAWGGLVDGLYFPWDQDDLVAQKICEIEHVDSYRTD  151 (364)
T ss_dssp             TSEEEECCCSSSCHHHHSCEEEECTTSC--------EEEEEEECCTTTHHHHCSSSCCTTGGGHHHHHHHHHTCCEEEEE
T ss_pred             ceEEEEccCCChHhhcceeEEEEecCCc--------eEeecccccCCcccccccccccccHHHHHHHHHHHhcccccccc
Confidence            9999999999999999999999998887        999999999999887777899999999999999999999765 4


Q ss_pred             cceecCCceEECCCccEEEecceecCCCCCCCCCHHHHHHHHHHHhCCceEEEcCCCccC--------------------
Q 021621          160 SMVLEGGSIHVDGEGTCLTTEECLLNKNRNPHLTKGQIENELKAYLGVMKIIWLPRGLFG--------------------  219 (310)
Q Consensus       160 ~lvlEGG~ie~dG~GtlltTe~~lln~nRNp~lsk~eie~~Lk~~LGv~kvIWL~~G~~g--------------------  219 (310)
                      +||+|||||++||+||||||++||+|+||||++||+|||++||++||++||||||+|+.|                    
T Consensus       152 ~lvlEGG~i~~dG~GtlltTe~~ll~~nRNp~ls~~~ie~~Lk~~LGv~~viwl~~gl~~DdTdGHID~~arFi~~~~il  231 (364)
T d2jera1         152 DFVLEGGSFHVDGQGTVLTTEMCLLSEGRNPQLSKEAIEQKLCDYLNVEKVLWLGDGIDPEETNGHVDDVACFIAPGEVA  231 (364)
T ss_dssp             EEECCGGGEEECSSSEEEEEHHHHTSTTTCTTSCHHHHHHHHHHHHTCSEEEEECCCSCTTTTSSCGGGTEEEEETTEEE
T ss_pred             CeEEcCCceEECCCceEEEehhhhhccCCCCCCCHHHHHHHHHHHhCCceeEEecCCcccCCCCCCccceEEEeCCCceE
Confidence            899999999999999999999999999999999999999999999999999999988765                    


Q ss_pred             ----------------------------------eecCCCCc------------------cccCCccccccceeEEEECC
Q 021621          220 ----------------------------------MIHDGEAK------------------PRLAGTRLAASYVNFYIANG  247 (310)
Q Consensus       220 ----------------------------------l~~~p~~~------------------~~~~g~~l~asY~Nfli~N~  247 (310)
                                                        |+++|.|.                  ++.+|.+++|||+|||++|+
T Consensus       232 ~~~~~d~~~~~~~~~~~~~~~L~~~~da~G~~~~i~~lp~P~~~~~~~~~~~~~~~~~~~~~~~g~~l~aSY~Nfli~N~  311 (364)
T d2jera1         232 CIYTEDQNSPFYEAAQDAYQRLLKMTDAKGRQLKVHKLCCPVKNVTIKGSFKIDFVEGTMPREDGDICIASYMNFLITND  311 (364)
T ss_dssp             EECCCCTTSTTHHHHHHHHHHHHTCBCTTCCBCEEEEECCCSSCEECCTTSCCCCCTTSCCCCTTCEECCCTTCCEEETT
T ss_pred             EEecCCCCCccHHHHHHHHHHHHhhhhhcCCCceEEeccCCCcccccccccccccccCcccccCCCCcceeeEEEEEECC
Confidence                                              12222221                  12357899999999999999


Q ss_pred             eEEeccCCCchhHHHHHHHHHHhCCCCEEEecCchhHHhhCCCceeeecCccCC
Q 021621          248 GIITPQFGDKKWDGEAVRVLSQAFPKYEVVGIERAREIVLGGGNIHCITQQQPA  301 (310)
Q Consensus       248 ~VivP~fg~~~~D~~Al~~l~~~fP~r~Vv~I~~~~~l~~~GG~iHCiT~q~P~  301 (310)
                      +||||+||++ +|++|+++||++||+|+||+|+ |++|+.+||||||+|||+|+
T Consensus       312 ~VivP~fg~~-~D~~Al~~l~~~fP~r~Vv~I~-~~~i~~~gG~iHCiT~q~P~  363 (364)
T d2jera1         312 GVIVPQYGDE-NDRLALEQVQTMFPDKKIVGVN-TVEVVYGGGNIHXITQQEPK  363 (364)
T ss_dssp             EEEEEECSCT-THHHHHHHHHHHSTTSEEEEEE-CHHHHTTTCCTGGGCEEEEC
T ss_pred             EEEEecCCCH-HHHHHHHHHHHHCCCCEEEEEe-cHHHHhcCCccchhhhcCCC
Confidence            9999999999 9999999999999999999999 99999999999999999996
>d1vkpa_ d.126.1.6 (A:) Agmatine iminohydrolase {Thale-cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure
>d2ewoa1 d.126.1.6 (A:2-370) Agmatine iminohydrolase {Streptococcus mutans [TaxId: 1309]} Back     information, alignment and structure
>d1xkna_ d.126.1.6 (A:) Putative peptidyl-arginine deiminase {Chlorobium tepidum [TaxId: 1097]} Back     information, alignment and structure
>d2cmua1 d.126.1.6 (A:3-332) Putative peptidyl-arginine deiminase {Helicobacter pylori J99 [TaxId: 85963]} Back     information, alignment and structure
>d1zbra1 d.126.1.6 (A:3-341) Putative peptidyl-arginine deiminase {Porphyromonas gingivalis [TaxId: 837]} Back     information, alignment and structure
>d1h70a_ d.126.1.3 (A:) Dimethylarginine dimethylaminohydrolase DDAH {Pseudomonas aeruginosa [TaxId: 287]} Back     information, alignment and structure
>d1s9ra_ d.126.1.4 (A:) Arginine deiminase {Mycoplasma arginini [TaxId: 2094]} Back     information, alignment and structure
>d1rxxa_ d.126.1.4 (A:) Arginine deiminase {Pseudomonas aeruginosa [TaxId: 287]} Back     information, alignment and structure
>d1bwda_ d.126.1.2 (A:) L-arginine: inosamine-phosphate amidinotransferase {Streptomyces griseus [TaxId: 1911]} Back     information, alignment and structure
>d1jdwa_ d.126.1.2 (A:) L-arginine: glycine amidinotransferase {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure