Citrus Sinensis ID: 021646

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------31
MIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAFPLLKGVVATTDVVEACKDVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEKHAAPNCKVLVVANPANTNALILKEFAPSIPAKNITCLTRLDHNRAMGQISERLKVHVSDVKNVIIWGNHSSTQYPDVNHATVTTSKGEKPVREAVADDNWLNTEFITTVQQRGAAIIKARKLSSALSAASSACDHIRDWVLGTPKGTWVSMGVYSDGSYGIPEGLIYSFPVTCEKGEWSIVKGLKVDEFSRAKMDATAEELAEEKTLAYSCLN
cEEEccccccccEEEEEEEccccHHHHHHHHHHHHHccccccccccEEEccHHHHcccccEEEEEccccccccccHHHHHHHHHHHHHHHHHHHHHHcccccEEEEEcccHHHHHHHHHHHccccccccEEEEHHHHHHHHHHHHHHHHcccccccEEEEEEcccccccccccccEEEEccccccHHHHHcccHHHHHHHHHHHHHccHHHHHHHcccccHHHHHHHHHHHHHHHHcccccccEEEEEEEccccccccccEEEEEEEEEEccEEEEEEcccccHHHHHHHHHHHHHHHHHHHHHHHHHc
cHHccccccccccEEEEEEccHHHHHHHHHHHHHHHccccccEEEEEEEccHHHHHccccEEEEcccccccccccccccccccHHHHHHHHHHHHHccccccEEEEccccHHHHHHHHHHcccccccccEEEccHHHHHHHHHHHHHHHcccHHHEEccEEEEccccccEEEccccEEEEccEEccHHHHHccHHHHccHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHcccccccEEEEEEccccHHcccccEEEEEEEEEccEEEEcccccccHHHHHHHHHHHHHHHHHHHHHHHHcc
miargimlgpdqpvILHMLDIEPAAEALNGVKMELIDAAFPLLKGVVATTDVVEACKDVNIAVmvggfprkegmerkdvmsKNVSIYKAQASALekhaapnckvLVVANPANTNALIlkefapsipaknitcltrldhnramGQISERLKVHVSDVKNVIIWgnhsstqypdvnhatvttskgekpvreavaddnwlntEFITTVQQRGAAIIKARKLSSALSAASSAcdhirdwvlgtpkgtwvsmgvysdgsygipegliysfpvtcekgewsivkglkvdefsRAKMDATAEELAEEKTLAYSCLN
miargimlgpdqPVILHMLDIEPAAEALNGVKMELIDAAFPLLKGVVATTDVVEACKDVNIAVmvggfprkegmerkdvmsKNVSIYKAQASALEKHAAPNCKVLVVANPANTNALILKefapsipaknITCLTRLDHNRAMGQISERLKVHVSDVKNVIIWGnhsstqypdvnhatvttskgekpvreavaddnwlnTEFITTVQQRGAAIIKARKLSSALSAASSACDHIRDWVLGTPKGTWVSMGVYSDGSYGIPEGLIYSFPVTCEKGEWSIVKGLKVDEFSRAKMDATAEelaeektlayscln
MIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAFPLLKGVVATTDVVEACKDVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEKHAAPNCKVLVVANPANTNALILKEFAPSIPAKNITCLTRLDHNRAMGQISERLKVHVSDVKNVIIWGNHSSTQYPDVNHATVTTSKGEKPVREAVADDNWLNTEFITTVQQRGAAIIKARKlssalsaassaCDHIRDWVLGTPKGTWVSMGVYSDGSYGIPEGLIYSFPVTCEKGEWSIVKGLKVDEFSRAKMDataeelaeektlaYSCLN
*****IMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAFPLLKGVVATTDVVEACKDVNIAVMVGGFPR************NVSIYKAQASALEKHAAPNCKVLVVANPANTNALILKEFAPSIPAKNITCLTRLDHNRAMGQISERLKVHVSDVKNVIIWGNHSSTQYPDVNHATV*********REAVADDNWLNTEFITTVQQRGAAIIKARKLSSALSAASSACDHIRDWVLGTPKGTWVSMGVYSDGSYGIPEGLIYSFPVTCEKGEWSIVKGLKVDEF************************
MIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAFPLLKGVVATTDVVEACKDVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEKHAAPNCKVLVVANPANTNALILKEFAPSIPAKNITCLTRLDHNRAMGQISERLKVHVSDVKNVIIWGNHSSTQYPDVNHATVTTSKGEKPVREAVADDNWLNTEFITTVQQRGAAIIKARKLSSALSAASSACDHIRDWVLGTPKGTWVSMGVYSDGSYGIPEGLIYSFPVTCEKGEWSIVKGLKVDEFSRAKMDATAEELAEEKTLAYSCLN
MIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAFPLLKGVVATTDVVEACKDVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEKHAAPNCKVLVVANPANTNALILKEFAPSIPAKNITCLTRLDHNRAMGQISERLKVHVSDVKNVIIWGNHSSTQYPDVNHATVTTSKGEKPVREAVADDNWLNTEFITTVQQRGAAIIKA*************CDHIRDWVLGTPKGTWVSMGVYSDGSYGIPEGLIYSFPVTCEKGEWSIVKGLKVDEFSRAKMDATAEELAEEKTLAYSCLN
MI*RGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAFPLLKGVVATTDVVEACKDVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEKHAAPNCKVLVVANPANTNALILKEFAPSIPAKNITCLTRLDHNRAMGQISERLKVHVSDVKNVIIWGNHSSTQYPDVNHATVTTSKGEKPVREAVADDNWLNTEFITTVQQRGAAIIKARKLSSALSAASSACDHIRDWVLGTPKGTWVSMGVYSDGSYGIPEGLIYSFPVTCEKGEWSIVKGLKVDEFSRAKMDATAEELAEEKTLAYSCLN
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MIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAFPLLKGVVATTDVVEACKDVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEKHAAPNCKVLVVANPANTNALILKEFAPSIPAKNITCLTRLDHNRAMGQISERLKVHVSDVKNVIIWGNHSSTQYPDVNHATVTTSKGEKPVREAVADDNWLNTEFITTVQQRGAAIIKARKLSSALSAASSACDHIRDWVLGTPKGTWVSMGVYSDGSYGIPEGLIYSFPVTCEKGEWSIVKGLKVDEFSRAKMDATAEELAEEKTLAYSCLN
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query309 2.2.26 [Sep-21-2011]
Q08062332 Malate dehydrogenase, cyt N/A no 0.996 0.927 0.886 1e-158
Q7XDC8332 Malate dehydrogenase, cyt yes no 1.0 0.930 0.870 1e-157
O48905332 Malate dehydrogenase, cyt N/A no 1.0 0.930 0.864 1e-154
O24047332 Malate dehydrogenase, cyt N/A no 0.996 0.927 0.873 1e-153
P93819332 Malate dehydrogenase, cyt yes no 1.0 0.930 0.867 1e-152
P57106332 Malate dehydrogenase, cyt no no 1.0 0.930 0.867 1e-152
Q9SML8332 Malate dehydrogenase, cyt N/A no 0.996 0.927 0.857 1e-150
P11708334 Malate dehydrogenase, cyt yes no 0.996 0.922 0.598 1e-104
Q3T145334 Malate dehydrogenase, cyt yes no 0.993 0.919 0.597 1e-104
P40925334 Malate dehydrogenase, cyt yes no 0.996 0.922 0.588 1e-103
>sp|Q08062|MDHC_MAIZE Malate dehydrogenase, cytoplasmic OS=Zea mays PE=2 SV=2 Back     alignment and function desciption
 Score =  557 bits (1435), Expect = e-158,   Method: Compositional matrix adjust.
 Identities = 273/308 (88%), Positives = 287/308 (93%)

Query: 1   MIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAFPLLKGVVATTDVVEACKDVN 60
           MIARG+MLG DQPVILHMLDI PAAEALNGVKMEL+DAAFPLLKGVVATTDVVEAC  VN
Sbjct: 24  MIARGVMLGADQPVILHMLDIPPAAEALNGVKMELVDAAFPLLKGVVATTDVVEACTGVN 83

Query: 61  IAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEKHAAPNCKVLVVANPANTNALILKE 120
           +AVMVGGFPRKEGMERKDVMSKNVSIYK+QASALE HAAPNCKVLVVANPANTNALILKE
Sbjct: 84  VAVMVGGFPRKEGMERKDVMSKNVSIYKSQASALEAHAAPNCKVLVVANPANTNALILKE 143

Query: 121 FAPSIPAKNITCLTRLDHNRAMGQISERLKVHVSDVKNVIIWGNHSSTQYPDVNHATVTT 180
           FAPSIP KN+TCLTRLDHNRA+GQISERL V VSDVKNVIIWGNHSS+QYPDVNHATV T
Sbjct: 144 FAPSIPEKNVTCLTRLDHNRALGQISERLNVQVSDVKNVIIWGNHSSSQYPDVNHATVKT 203

Query: 181 SKGEKPVREAVADDNWLNTEFITTVQQRGAAIIKARKLSSALSAASSACDHIRDWVLGTP 240
           S GEKPVRE V+DD WLN EFITTVQQRGAAIIKARK SSALSAASSACDHIRDWVLGTP
Sbjct: 204 STGEKPVRELVSDDEWLNGEFITTVQQRGAAIIKARKFSSALSAASSACDHIRDWVLGTP 263

Query: 241 KGTWVSMGVYSDGSYGIPEGLIYSFPVTCEKGEWSIVKGLKVDEFSRAKMDATAEELAEE 300
           +GT+VSMGVYSDGSYG+P GLIYSFPVTC  GEW IV+GL +DEFSR KMDATA+EL EE
Sbjct: 264 EGTFVSMGVYSDGSYGVPSGLIYSFPVTCSGGEWKIVQGLPIDEFSRKKMDATAQELTEE 323

Query: 301 KTLAYSCL 308
           KTLAYSCL
Sbjct: 324 KTLAYSCL 331

Zea mays (taxid: 4577)
EC: 1EC: .EC: 1EC: .EC: 1EC: .EC: 3EC: 7
>sp|Q7XDC8|MDHC_ORYSJ Malate dehydrogenase, cytoplasmic OS=Oryza sativa subsp. japonica GN=Os10g0478200 PE=1 SV=3 Back     alignment and function description
>sp|O48905|MDHC_MEDSA Malate dehydrogenase, cytoplasmic OS=Medicago sativa GN=CMDH PE=2 SV=1 Back     alignment and function description
>sp|O24047|MDHC_MESCR Malate dehydrogenase, cytoplasmic OS=Mesembryanthemum crystallinum GN=MDH PE=2 SV=1 Back     alignment and function description
>sp|P93819|MDHC1_ARATH Malate dehydrogenase, cytoplasmic 1 OS=Arabidopsis thaliana GN=At1g04410 PE=1 SV=2 Back     alignment and function description
>sp|P57106|MDHC2_ARATH Malate dehydrogenase, cytoplasmic 2 OS=Arabidopsis thaliana GN=At5g43330 PE=2 SV=1 Back     alignment and function description
>sp|Q9SML8|MDHC_BETVU Malate dehydrogenase, cytoplasmic OS=Beta vulgaris GN=NR1 PE=1 SV=1 Back     alignment and function description
>sp|P11708|MDHC_PIG Malate dehydrogenase, cytoplasmic OS=Sus scrofa GN=MDH1 PE=1 SV=4 Back     alignment and function description
>sp|Q3T145|MDHC_BOVIN Malate dehydrogenase, cytoplasmic OS=Bos taurus GN=MDH1 PE=2 SV=3 Back     alignment and function description
>sp|P40925|MDHC_HUMAN Malate dehydrogenase, cytoplasmic OS=Homo sapiens GN=MDH1 PE=1 SV=4 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query309
449431976364 PREDICTED: malate dehydrogenase, cytopla 0.996 0.846 0.922 1e-162
225453490332 PREDICTED: malate dehydrogenase, cytopla 1.0 0.930 0.902 1e-160
147800078361 hypothetical protein VITISV_032320 [Viti 1.0 0.855 0.902 1e-160
449478013391 PREDICTED: malate dehydrogenase, cytopla 0.987 0.780 0.921 1e-160
255541140332 malate dehydrogenase, putative [Ricinus 1.0 0.930 0.906 1e-159
350534656334 cytosolic malate dehydrogenase [Solanum 1.0 0.925 0.902 1e-158
224063661332 predicted protein [Populus trichocarpa] 1.0 0.930 0.889 1e-158
242039369332 hypothetical protein SORBIDRAFT_01g01928 0.996 0.927 0.896 1e-157
162464321332 malate dehydrogenase, cytoplasmic [Zea m 0.996 0.927 0.886 1e-156
356547879373 PREDICTED: malate dehydrogenase, cytopla 1.0 0.828 0.877 1e-156
>gi|449431976|ref|XP_004133776.1| PREDICTED: malate dehydrogenase, cytoplasmic-like [Cucumis sativus] Back     alignment and taxonomy information
 Score =  577 bits (1488), Expect = e-162,   Method: Compositional matrix adjust.
 Identities = 284/308 (92%), Positives = 296/308 (96%)

Query: 1   MIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAFPLLKGVVATTDVVEACKDVN 60
           MIARG+MLGPDQPVILHMLDIEPAAEALNGVKMELIDAAFPLLKGV+ATTDVVEACK+VN
Sbjct: 56  MIARGVMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAFPLLKGVIATTDVVEACKEVN 115

Query: 61  IAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEKHAAPNCKVLVVANPANTNALILKE 120
           IAVMVGGFPRKEGMERKDVM+KNVSIYK QASALE+HAAP+CKVLVVANPANTNALILKE
Sbjct: 116 IAVMVGGFPRKEGMERKDVMTKNVSIYKKQASALEQHAAPDCKVLVVANPANTNALILKE 175

Query: 121 FAPSIPAKNITCLTRLDHNRAMGQISERLKVHVSDVKNVIIWGNHSSTQYPDVNHATVTT 180
           FAPSIP KNITCLTRLDHNRA+GQISERLKVHVSDV NVIIWGNHSSTQYPDVNHA VTT
Sbjct: 176 FAPSIPEKNITCLTRLDHNRALGQISERLKVHVSDVNNVIIWGNHSSTQYPDVNHAKVTT 235

Query: 181 SKGEKPVREAVADDNWLNTEFITTVQQRGAAIIKARKLSSALSAASSACDHIRDWVLGTP 240
           S GEKPVRE VADD WLNTEFI TVQQRGAAIIKARKLSSALSAAS+ACDHIR+WVLGTP
Sbjct: 236 SSGEKPVRELVADDQWLNTEFIATVQQRGAAIIKARKLSSALSAASAACDHIRNWVLGTP 295

Query: 241 KGTWVSMGVYSDGSYGIPEGLIYSFPVTCEKGEWSIVKGLKVDEFSRAKMDATAEELAEE 300
           KGTWVSMGVYSDGSYGI  GLIYSFPVTCEKGEWSIV+GLK+DEFSRAKMDATA+EL EE
Sbjct: 296 KGTWVSMGVYSDGSYGIERGLIYSFPVTCEKGEWSIVQGLKIDEFSRAKMDATAKELIEE 355

Query: 301 KTLAYSCL 308
           K LAYSCL
Sbjct: 356 KALAYSCL 363

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|225453490|ref|XP_002277543.1| PREDICTED: malate dehydrogenase, cytoplasmic [Vitis vinifera] gi|297734557|emb|CBI16608.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|147800078|emb|CAN77649.1| hypothetical protein VITISV_032320 [Vitis vinifera] Back     alignment and taxonomy information
>gi|449478013|ref|XP_004155195.1| PREDICTED: malate dehydrogenase, cytoplasmic-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|255541140|ref|XP_002511634.1| malate dehydrogenase, putative [Ricinus communis] gi|223548814|gb|EEF50303.1| malate dehydrogenase, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|350534656|ref|NP_001234152.1| cytosolic malate dehydrogenase [Solanum lycopersicum] gi|52139818|gb|AAU29199.1| cytosolic malate dehydrogenase [Solanum lycopersicum] Back     alignment and taxonomy information
>gi|224063661|ref|XP_002301252.1| predicted protein [Populus trichocarpa] gi|222842978|gb|EEE80525.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|242039369|ref|XP_002467079.1| hypothetical protein SORBIDRAFT_01g019280 [Sorghum bicolor] gi|241920933|gb|EER94077.1| hypothetical protein SORBIDRAFT_01g019280 [Sorghum bicolor] Back     alignment and taxonomy information
>gi|162464321|ref|NP_001105603.1| malate dehydrogenase, cytoplasmic [Zea mays] gi|18202485|sp|Q08062.2|MDHC_MAIZE RecName: Full=Malate dehydrogenase, cytoplasmic gi|2286153|gb|AAB64290.1| cytoplasmic malate dehydrogenase [Zea mays] gi|238006868|gb|ACR34469.1| unknown [Zea mays] gi|414871066|tpg|DAA49623.1| TPA: malate dehydrogenase4 [Zea mays] Back     alignment and taxonomy information
>gi|356547879|ref|XP_003542332.1| PREDICTED: malate dehydrogenase, cytoplasmic-like [Glycine max] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query309
TAIR|locus:2018244332 c-NAD-MDH1 "cytosolic-NAD-depe 1.0 0.930 0.799 1e-130
TAIR|locus:2176441332 c-NAD-MDH2 "cytosolic-NAD-depe 1.0 0.930 0.799 1e-130
TAIR|locus:2165066339 c-NAD-MDH3 "cytosolic-NAD-depe 1.0 0.911 0.718 4e-122
UNIPROTKB|P11708334 MDH1 "Malate dehydrogenase, cy 0.938 0.868 0.577 5.4e-86
UNIPROTKB|Q3T145334 MDH1 "Malate dehydrogenase, cy 0.938 0.868 0.573 1.4e-85
UNIPROTKB|P40925334 MDH1 "Malate dehydrogenase, cy 0.938 0.868 0.570 1.8e-85
MGI|MGI:97051334 Mdh1 "malate dehydrogenase 1, 0.938 0.868 0.577 1.3e-84
RGD|3072334 Mdh1 "malate dehydrogenase 1, 0.938 0.868 0.577 1.3e-84
UNIPROTKB|E2QV08348 MDH1 "Malate dehydrogenase" [C 0.938 0.833 0.563 2.1e-84
UNIPROTKB|Q5ZME2334 MDH1 "Malate dehydrogenase, cy 0.938 0.868 0.567 3.4e-84
TAIR|locus:2018244 c-NAD-MDH1 "cytosolic-NAD-dependent malate dehydrogenase 1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1282 (456.3 bits), Expect = 1.0e-130, P = 1.0e-130
 Identities = 247/309 (79%), Positives = 262/309 (84%)

Query:     1 MIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAFPLLKGVVATTDVVEACKDVN 60
             MIARGIMLG DQPVILHMLDI PAAEALNGVKMELIDAAFPLLKGVVATTD VE C  VN
Sbjct:    24 MIARGIMLGADQPVILHMLDIPPAAEALNGVKMELIDAAFPLLKGVVATTDAVEGCTGVN 83

Query:    61 IAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEKHAAPNCKVLVVANPANTNALILKE 120
             +AVMVGGFPRKEGMERKDVMSKNVSIYK+QA+ALEKHAAPNCKVLVVANPANTNALILKE
Sbjct:    84 VAVMVGGFPRKEGMERKDVMSKNVSIYKSQAAALEKHAAPNCKVLVVANPANTNALILKE 143

Query:   121 FAPSIPAKNITCLTRLDHNRAMGQISERLKVHVSDVKNVIIWGNHSSTQYPDVNHATVTT 180
             FAPSIP KNI+CLTRLDHNRA+GQISERL V VSDVKNVIIWGNHSS+QYPDVNHA V T
Sbjct:   144 FAPSIPEKNISCLTRLDHNRALGQISERLSVPVSDVKNVIIWGNHSSSQYPDVNHAKVQT 203

Query:   181 SKGEKPVREAVADDNWLNTEFITTVQQRGAAIIKARKXXXXXXXXXXXCDHIRDWVLGTP 240
             S GEKPVRE V DD WL+ EFI+TVQQRGAAIIKARK           CDHIRDWVLGTP
Sbjct:   204 SSGEKPVRELVKDDAWLDGEFISTVQQRGAAIIKARKLSSALSAASSACDHIRDWVLGTP 263

Query:   241 KGTWVSMGVYSDGSYGIPEGLIYSFPVTCEKGEWSIVKGLKVDEFSRAKMDXXXXXXXXX 300
             +GT+VSMGVYSDGSY +P GLIYSFPVTC  G+WSIV+GL +DE SR KMD         
Sbjct:   264 EGTFVSMGVYSDGSYSVPSGLIYSFPVTCRNGDWSIVQGLPIDEVSRKKMDLTAEELKEE 323

Query:   301 XXXXYSCLN 309
                 YSCL+
Sbjct:   324 KDLAYSCLS 332
GO:0000166 "nucleotide binding" evidence=IEA
GO:0003824 "catalytic activity" evidence=IEA
GO:0005737 "cytoplasm" evidence=ISM
GO:0005975 "carbohydrate metabolic process" evidence=IEA
GO:0006108 "malate metabolic process" evidence=IEA
GO:0016491 "oxidoreductase activity" evidence=IEA
GO:0016615 "malate dehydrogenase activity" evidence=IEA;ISS
GO:0016616 "oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor" evidence=IEA
GO:0030060 "L-malate dehydrogenase activity" evidence=IEA
GO:0044262 "cellular carbohydrate metabolic process" evidence=IEA
GO:0055114 "oxidation-reduction process" evidence=IEA
GO:0005634 "nucleus" evidence=IDA
GO:0005773 "vacuole" evidence=IDA
GO:0009570 "chloroplast stroma" evidence=IDA
GO:0046686 "response to cadmium ion" evidence=IEP;RCA
GO:0005774 "vacuolar membrane" evidence=IDA
GO:0005886 "plasma membrane" evidence=IDA
GO:0016020 "membrane" evidence=IDA
GO:0009651 "response to salt stress" evidence=IEP;RCA
GO:0009507 "chloroplast" evidence=IDA
GO:0048046 "apoplast" evidence=IDA
GO:0010043 "response to zinc ion" evidence=IEP
GO:0005829 "cytosol" evidence=RCA
GO:0009506 "plasmodesma" evidence=IDA
GO:0005794 "Golgi apparatus" evidence=RCA
GO:0006094 "gluconeogenesis" evidence=RCA
GO:0006096 "glycolysis" evidence=RCA
GO:0006833 "water transport" evidence=RCA
GO:0006972 "hyperosmotic response" evidence=RCA
GO:0007030 "Golgi organization" evidence=RCA
GO:0009266 "response to temperature stimulus" evidence=RCA
TAIR|locus:2176441 c-NAD-MDH2 "cytosolic-NAD-dependent malate dehydrogenase 2" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2165066 c-NAD-MDH3 "cytosolic-NAD-dependent malate dehydrogenase 3" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
UNIPROTKB|P11708 MDH1 "Malate dehydrogenase, cytoplasmic" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
UNIPROTKB|Q3T145 MDH1 "Malate dehydrogenase, cytoplasmic" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|P40925 MDH1 "Malate dehydrogenase, cytoplasmic" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
MGI|MGI:97051 Mdh1 "malate dehydrogenase 1, NAD (soluble)" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
RGD|3072 Mdh1 "malate dehydrogenase 1, NAD (soluble)" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|E2QV08 MDH1 "Malate dehydrogenase" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|Q5ZME2 MDH1 "Malate dehydrogenase, cytoplasmic" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
A9IIS3MDH_BORPD1, ., 1, ., 1, ., 3, 70.54630.95460.8966yesno
O48905MDHC_MEDSA1, ., 1, ., 1, ., 3, 70.86401.00.9307N/Ano
A5U1T8MDH_MYCTA1, ., 1, ., 1, ., 3, 70.53150.96110.9027yesno
Q0VQ52MDH_ALCBS1, ., 1, ., 1, ., 3, 70.57660.95460.8993yesno
Q9RXI8MDH_DEIRA1, ., 1, ., 1, ., 3, 70.58330.95460.8939yesno
O88989MDHC_RAT1, ., 1, ., 1, ., 3, 70.59540.99670.9221yesno
O24047MDHC_MESCR1, ., 1, ., 1, ., 3, 70.87330.99670.9277N/Ano
Q7NZ60MDH_CHRVO1, ., 1, ., 1, ., 3, 70.550.95460.9049yesno
Q0ABE6MDH_ALHEH1, ., 1, ., 1, ., 3, 70.56330.95460.9049yesno
Q21K60MDH_SACD21, ., 1, ., 1, ., 3, 70.57000.97730.9235yesno
Q5ZME2MDHC_CHICK1, ., 1, ., 1, ., 3, 70.58570.99670.9221yesno
A1R2B5MDH_ARTAT1, ., 1, ., 1, ., 3, 70.530.95790.9024yesno
Q6DIY9MDHC_XENTR1, ., 1, ., 1, ., 3, 70.59540.99670.9221yesno
A1K5Q9MDH_AZOSB1, ., 1, ., 1, ., 3, 70.54120.95460.8939yesno
A1WV94MDH_HALHL1, ., 1, ., 1, ., 3, 70.55330.95460.9049yesno
Q1Q932MDH_PSYCK1, ., 1, ., 1, ., 3, 70.57140.95460.8966yesno
A1KI28MDH_MYCBP1, ., 1, ., 1, ., 3, 70.53150.96110.9027yesno
Q08062MDHC_MAIZE1, ., 1, ., 1, ., 3, 70.88630.99670.9277N/Ano
B3PHI3MDH_CELJU1, ., 1, ., 1, ., 3, 70.56330.95460.9021yesno
P93819MDHC1_ARATH1, ., 1, ., 1, ., 3, 70.86731.00.9307yesno
P14152MDHC_MOUSE1, ., 1, ., 1, ., 3, 70.59540.99670.9221yesno
P0A5J6MDH_MYCTU1, ., 1, ., 1, ., 3, 70.53150.96110.9027yesno
Q47TT4MDH_THEFY1, ., 1, ., 1, ., 3, 70.53660.95790.8969yesno
B2HRH5MDH_MYCMM1, ., 1, ., 1, ., 3, 70.54660.95790.8996yesno
Q6PAB3MDHC_XENLA1, ., 1, ., 1, ., 3, 70.58250.99670.9221N/Ano
A5WGM2MDH_PSYWF1, ., 1, ., 1, ., 3, 70.56140.95460.9021yesno
Q7XDC8MDHC_ORYSJ1, ., 1, ., 1, ., 3, 70.87051.00.9307yesno
C5BU70MDH_TERTT1, ., 1, ., 1, ., 3, 70.570.95460.9021yesno
P57106MDHC2_ARATH1, ., 1, ., 1, ., 3, 70.86731.00.9307nono
Q7YRU4MDHC_FELCA1, ., 1, ., 1, ., 3, 70.58570.99670.9221N/Ano
C1AMN4MDH_MYCBT1, ., 1, ., 1, ., 3, 70.53150.96110.9027yesno
P11708MDHC_PIG1, ., 1, ., 1, ., 3, 70.59870.99670.9221yesno
C1CY73MDH_DEIDV1, ., 1, ., 1, ., 3, 70.570.95460.8939yesno
P0A5J7MDH_MYCBO1, ., 1, ., 1, ., 3, 70.53150.96110.9027yesno
Q3T145MDHC_BOVIN1, ., 1, ., 1, ., 3, 70.59740.99350.9191yesno
P40925MDHC_HUMAN1, ., 1, ., 1, ., 3, 70.58890.99670.9221yesno
Q7W5Q8MDH_BORPA1, ., 1, ., 1, ., 3, 70.54960.95460.8966yesno
P61976MDH_MYCPA1, ., 1, ., 1, ., 3, 70.54660.95790.8996N/Ano
Q7WD94MDH_BORBR1, ., 1, ., 1, ., 3, 70.54960.95460.8966yesno
Q7VW97MDH_BORPE1, ., 1, ., 1, ., 3, 70.54960.95460.8966yesno
Q9SML8MDHC_BETVU1, ., 1, ., 1, ., 3, 70.85710.99670.9277N/Ano
Q04820MDHC_ECHGR1, ., 1, ., 1, ., 3, 70.50480.99670.9277N/Ano
A4SWW0MDH_POLSQ1, ., 1, ., 1, ., 3, 70.53970.95460.8966yesno
Q82HS2MDH_STRAW1, ., 1, ., 1, ., 3, 70.52660.95790.8996yesno
Q4FQU7MDH_PSYA21, ., 1, ., 1, ., 3, 70.56470.95460.8966yesno
Q1IWC9MDH_DEIGD1, ., 1, ., 1, ., 3, 70.57480.93520.8652yesno
A9AMD5MDH_BURM11, ., 1, ., 1, ., 3, 70.54660.95460.8993yesno
Q54GE6MDHA_DICDI1, ., 1, ., 1, ., 3, 70.56081.00.7902yesno
Q9K3J3MDH_STRCO1, ., 1, ., 1, ., 3, 70.53660.95790.8996yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer1.1.10.998
3rd Layer1.1.1.370.994

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
GSVIVG00019169001
RecName- Full=Malate dehydrogenase; EC=1.1.1.37; (332 aa)
(Vitis vinifera)
Predicted Functional Partners:
GSVIVG00017898001
SubName- Full=Chromosome chr17 scaffold_16, whole genome shotgun sequence; (565 aa)
     •• 0.948
GSVIVG00003727001
RecName- Full=Citrate synthase; (472 aa)
•    •• 0.930
GSVIVG00028048001
SubName- Full=Chromosome chr7 scaffold_42, whole genome shotgun sequence; (470 aa)
     •• 0.930
NADP-ME
RecName- Full=Malic enzyme; (496 aa)
     •• 0.913
VVME2
RecName- Full=Malic enzyme; (591 aa)
     •• 0.913
GSVIVG00026767001
RecName- Full=Malic enzyme; (605 aa)
     •• 0.909
GSVIVG00018984001
RecName- Full=Malic enzyme; (625 aa)
     •• 0.909
GSVIVG00016723001
RecName- Full=Aspartate aminotransferase; EC=2.6.1.1; (411 aa)
     •• 0.909
GPEPC
RecName- Full=Phosphoenolpyruvate carboxylase; EC=4.1.1.31; (965 aa)
     •• 0.908
GSVIVG00027811001
RecName- Full=Phosphoenolpyruvate carboxylase; EC=4.1.1.31; (963 aa)
     •• 0.907

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query309
PLN00135309 PLN00135, PLN00135, malate dehydrogenase 0.0
cd01336325 cd01336, MDH_cytoplasmic_cytosolic, Cytoplasmic an 0.0
TIGR01758324 TIGR01758, MDH_euk_cyt, malate dehydrogenase, NAD- 0.0
TIGR01759323 TIGR01759, MalateDH-SF1, malate dehydrogenase 0.0
PRK05442326 PRK05442, PRK05442, malate dehydrogenase; Provisio 1e-176
cd00704323 cd00704, MDH, Malate dehydrogenase 1e-169
cd01338322 cd01338, MDH_choloroplast_like, Chloroplast-like m 1e-169
PLN00112444 PLN00112, PLN00112, malate dehydrogenase (NADP); P 6e-97
TIGR01756313 TIGR01756, LDH_protist, lactate dehydrogenase 3e-89
TIGR01757387 TIGR01757, Malate-DH_plant, malate dehydrogenase, 5e-89
cd05295452 cd05295, MDH_like, Malate dehydrogenase-like 2e-80
COG0039313 COG0039, Mdh, Malate/lactate dehydrogenases [Energ 3e-69
cd00650263 cd00650, LDH_MDH_like, NAD-dependent, lactate dehy 5e-56
pfam02866173 pfam02866, Ldh_1_C, lactate/malate dehydrogenase, 1e-49
pfam00056142 pfam00056, Ldh_1_N, lactate/malate dehydrogenase, 6e-32
cd00300300 cd00300, LDH_like, L-lactate dehydrogenase-like en 8e-18
cd01339300 cd01339, LDH-like_MDH, L-lactate dehydrogenase-lik 6e-17
PRK06223307 PRK06223, PRK06223, malate dehydrogenase; Reviewed 5e-15
PTZ00117319 PTZ00117, PTZ00117, malate dehydrogenase; Provisio 7e-15
TIGR01763305 TIGR01763, MalateDH_bact, malate dehydrogenase, NA 3e-13
cd05293312 cd05293, LDH_1, A subgroup of L-lactate dehydrogen 7e-13
cd05294309 cd05294, LDH-like_MDH_nadp, A lactate dehydrogenas 1e-11
TIGR01772312 TIGR01772, MDH_euk_gproteo, malate dehydrogenase, 2e-10
cd01337310 cd01337, MDH_glyoxysomal_mitochondrial, Glyoxysoma 7e-10
TIGR01771299 TIGR01771, L-LDH-NAD, L-lactate dehydrogenase 8e-09
PRK00066315 PRK00066, ldh, L-lactate dehydrogenase; Reviewed 6e-08
PTZ00082321 PTZ00082, PTZ00082, L-lactate dehydrogenase; Provi 2e-07
PLN00106323 PLN00106, PLN00106, malate dehydrogenase 4e-07
PLN02602350 PLN02602, PLN02602, lactate dehydrogenase 2e-06
PTZ00325321 PTZ00325, PTZ00325, malate dehydrogenase; Provisio 8e-06
cd05292308 cd05292, LDH_2, A subgroup of L-lactate dehydrogen 2e-05
PRK05086312 PRK05086, PRK05086, malate dehydrogenase; Provisio 3e-05
cd05291306 cd05291, HicDH_like, L-2-hydroxyisocapronate dehyd 4e-04
>gnl|CDD|177744 PLN00135, PLN00135, malate dehydrogenase Back     alignment and domain information 
 Score =  669 bits (1729), Expect = 0.0
 Identities = 283/309 (91%), Positives = 293/309 (94%)

Query: 1   MIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAFPLLKGVVATTDVVEACKDVN 60
           MIARG+MLGPDQPVILHMLDI PAAEALNGVKMELIDAAFPLLKGVVATTDVVEACK VN
Sbjct: 1   MIARGVMLGPDQPVILHMLDIPPAAEALNGVKMELIDAAFPLLKGVVATTDVVEACKGVN 60

Query: 61  IAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEKHAAPNCKVLVVANPANTNALILKE 120
           IAVMVGGFPRKEGMERKDVMSKNVSIYK+QASALEKHAAP+CKVLVVANPANTNALILKE
Sbjct: 61  IAVMVGGFPRKEGMERKDVMSKNVSIYKSQASALEKHAAPDCKVLVVANPANTNALILKE 120

Query: 121 FAPSIPAKNITCLTRLDHNRAMGQISERLKVHVSDVKNVIIWGNHSSTQYPDVNHATVTT 180
           FAPSIP KNITCLTRLDHNRA+GQISERL V VSDVKNVIIWGNHSSTQYPDVNHATV T
Sbjct: 121 FAPSIPEKNITCLTRLDHNRALGQISERLGVPVSDVKNVIIWGNHSSTQYPDVNHATVKT 180

Query: 181 SKGEKPVREAVADDNWLNTEFITTVQQRGAAIIKARKLSSALSAASSACDHIRDWVLGTP 240
             GEKPVRE VADD WLN EFITTVQQRGAAIIKARKLSSALSAASSACDHIRDWVLGTP
Sbjct: 181 PSGEKPVRELVADDAWLNGEFITTVQQRGAAIIKARKLSSALSAASSACDHIRDWVLGTP 240

Query: 241 KGTWVSMGVYSDGSYGIPEGLIYSFPVTCEKGEWSIVKGLKVDEFSRAKMDATAEELAEE 300
           +GTWVSMGVYSDGSYG+P GLIYSFPVTCEKGEWSIV+GL +DEFSR KMDATA+EL EE
Sbjct: 241 EGTWVSMGVYSDGSYGVPPGLIYSFPVTCEKGEWSIVQGLSIDEFSRKKMDATAKELKEE 300

Query: 301 KTLAYSCLN 309
           K LAYSCL+
Sbjct: 301 KELAYSCLS 309

Length = 309
>gnl|CDD|133421 cd01336, MDH_cytoplasmic_cytosolic, Cytoplasmic and cytosolic Malate dehydrogenases Back     alignment and domain information
>gnl|CDD|130819 TIGR01758, MDH_euk_cyt, malate dehydrogenase, NAD-dependent Back     alignment and domain information
>gnl|CDD|130820 TIGR01759, MalateDH-SF1, malate dehydrogenase Back     alignment and domain information
>gnl|CDD|235468 PRK05442, PRK05442, malate dehydrogenase; Provisional Back     alignment and domain information
>gnl|CDD|133420 cd00704, MDH, Malate dehydrogenase Back     alignment and domain information
>gnl|CDD|133423 cd01338, MDH_choloroplast_like, Chloroplast-like malate dehydrogenases Back     alignment and domain information
>gnl|CDD|215060 PLN00112, PLN00112, malate dehydrogenase (NADP); Provisional Back     alignment and domain information
>gnl|CDD|130817 TIGR01756, LDH_protist, lactate dehydrogenase Back     alignment and domain information
>gnl|CDD|130818 TIGR01757, Malate-DH_plant, malate dehydrogenase, NADP-dependent Back     alignment and domain information
>gnl|CDD|133431 cd05295, MDH_like, Malate dehydrogenase-like Back     alignment and domain information
>gnl|CDD|223117 COG0039, Mdh, Malate/lactate dehydrogenases [Energy production and conversion] Back     alignment and domain information
>gnl|CDD|133419 cd00650, LDH_MDH_like, NAD-dependent, lactate dehydrogenase-like, 2-hydroxycarboxylate dehydrogenase family Back     alignment and domain information
>gnl|CDD|202437 pfam02866, Ldh_1_C, lactate/malate dehydrogenase, alpha/beta C-terminal domain Back     alignment and domain information
>gnl|CDD|200963 pfam00056, Ldh_1_N, lactate/malate dehydrogenase, NAD binding domain Back     alignment and domain information
>gnl|CDD|133418 cd00300, LDH_like, L-lactate dehydrogenase-like enzymes Back     alignment and domain information
>gnl|CDD|133424 cd01339, LDH-like_MDH, L-lactate dehydrogenase-like malate dehydrogenase proteins Back     alignment and domain information
>gnl|CDD|180477 PRK06223, PRK06223, malate dehydrogenase; Reviewed Back     alignment and domain information
>gnl|CDD|173409 PTZ00117, PTZ00117, malate dehydrogenase; Provisional Back     alignment and domain information
>gnl|CDD|233562 TIGR01763, MalateDH_bact, malate dehydrogenase, NAD-dependent Back     alignment and domain information
>gnl|CDD|133429 cd05293, LDH_1, A subgroup of L-lactate dehydrogenases Back     alignment and domain information
>gnl|CDD|133430 cd05294, LDH-like_MDH_nadp, A lactate dehydrogenases-like structure with malate dehydrogenase enzymatic activity Back     alignment and domain information
>gnl|CDD|130833 TIGR01772, MDH_euk_gproteo, malate dehydrogenase, NAD-dependent Back     alignment and domain information
>gnl|CDD|133422 cd01337, MDH_glyoxysomal_mitochondrial, Glyoxysomal and mitochondrial malate dehydrogenases Back     alignment and domain information
>gnl|CDD|233566 TIGR01771, L-LDH-NAD, L-lactate dehydrogenase Back     alignment and domain information
>gnl|CDD|178836 PRK00066, ldh, L-lactate dehydrogenase; Reviewed Back     alignment and domain information
>gnl|CDD|173376 PTZ00082, PTZ00082, L-lactate dehydrogenase; Provisional Back     alignment and domain information
>gnl|CDD|215058 PLN00106, PLN00106, malate dehydrogenase Back     alignment and domain information
>gnl|CDD|178212 PLN02602, PLN02602, lactate dehydrogenase Back     alignment and domain information
>gnl|CDD|240360 PTZ00325, PTZ00325, malate dehydrogenase; Provisional Back     alignment and domain information
>gnl|CDD|133428 cd05292, LDH_2, A subgroup of L-lactate dehydrogenases Back     alignment and domain information
>gnl|CDD|235340 PRK05086, PRK05086, malate dehydrogenase; Provisional Back     alignment and domain information
>gnl|CDD|133427 cd05291, HicDH_like, L-2-hydroxyisocapronate dehydrogenases and some bacterial L-lactate dehydrogenases Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 309
PLN00135309 malate dehydrogenase 100.0
TIGR01756313 LDH_protist lactate dehydrogenase. This model repr 100.0
TIGR01759323 MalateDH-SF1 malate dehydrogenase. This model repr 100.0
PRK05442326 malate dehydrogenase; Provisional 100.0
TIGR01757387 Malate-DH_plant malate dehydrogenase, NADP-depende 100.0
COG0039313 Mdh Malate/lactate dehydrogenases [Energy producti 100.0
PLN00112444 malate dehydrogenase (NADP); Provisional 100.0
cd01338322 MDH_choloroplast_like Chloroplast-like malate dehy 100.0
cd05295452 MDH_like Malate dehydrogenase-like. These MDH-like 100.0
cd00704323 MDH Malate dehydrogenase. Malate dehydrogenase (MD 100.0
KOG1495332 consensus Lactate dehydrogenase [Energy production 100.0
TIGR01758324 MDH_euk_cyt malate dehydrogenase, NAD-dependent. T 100.0
cd05290307 LDH_3 A subgroup of L-lactate dehydrogenases. L-la 100.0
TIGR01771299 L-LDH-NAD L-lactate dehydrogenase. This model repr 100.0
cd01336325 MDH_cytoplasmic_cytosolic Cytoplasmic and cytosoli 100.0
PLN02602350 lactate dehydrogenase 100.0
cd05293312 LDH_1 A subgroup of L-lactate dehydrogenases. L-la 100.0
PRK00066315 ldh L-lactate dehydrogenase; Reviewed 100.0
cd00300300 LDH_like L-lactate dehydrogenase-like enzymes. Mem 100.0
cd05291306 HicDH_like L-2-hydroxyisocapronate dehydrogenases 100.0
KOG1496332 consensus Malate dehydrogenase [Energy production 100.0
cd05292308 LDH_2 A subgroup of L-lactate dehydrogenases. L-la 100.0
TIGR01763305 MalateDH_bact malate dehydrogenase, NAD-dependent. 100.0
PTZ00117319 malate dehydrogenase; Provisional 100.0
TIGR01772312 MDH_euk_gproteo malate dehydrogenase, NAD-dependen 100.0
cd05294309 LDH-like_MDH_nadp A lactate dehydrogenases-like st 100.0
PTZ00082321 L-lactate dehydrogenase; Provisional 100.0
cd01337310 MDH_glyoxysomal_mitochondrial Glyoxysomal and mito 100.0
cd01339300 LDH-like_MDH L-lactate dehydrogenase-like malate d 100.0
PTZ00325321 malate dehydrogenase; Provisional 100.0
PRK06223307 malate dehydrogenase; Reviewed 100.0
PRK05086312 malate dehydrogenase; Provisional 100.0
PLN00106323 malate dehydrogenase 100.0
cd00650263 LDH_MDH_like NAD-dependent, lactate dehydrogenase- 100.0
KOG1494345 consensus NAD-dependent malate dehydrogenase [Ener 100.0
PF02866174 Ldh_1_C: lactate/malate dehydrogenase, alpha/beta 100.0
PF00056141 Ldh_1_N: lactate/malate dehydrogenase, NAD binding 99.96
cd05197425 GH4_glycoside_hydrolases Glycoside Hydrases Family 99.86
PRK15076431 alpha-galactosidase; Provisional 99.85
cd05296419 GH4_P_beta_glucosidase Glycoside Hydrolases Family 99.82
cd05298437 GH4_GlvA_pagL_like Glycoside Hydrolases Family 4; 99.75
cd05297423 GH4_alpha_glucosidase_galactosidase Glycoside Hydr 99.74
COG1486442 CelF Alpha-galactosidases/6-phospho-beta-glucosida 98.95
PF02056183 Glyco_hydro_4: Family 4 glycosyl hydrolase; InterP 98.5
COG1004414 Ugd Predicted UDP-glucose 6-dehydrogenase [Cell en 91.77
PF03721185 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogen 88.52
PF11975232 Glyco_hydro_4C: Family 4 glycosyl hydrolase C-term 82.27
>PLN00135 malate dehydrogenase Back     alignment and domain information 
Probab=100.00  E-value=1.3e-76  Score=548.00  Aligned_cols=303  Identities=85%  Similarity=1.251  Sum_probs=275.7

Q ss_pred             CcccccccCCCCeEEEEEEecCCccchhhHHHHHHhhccCCCCcceeecCChhhhcCCCcEEEEeCCCCCCCCCCHHHHH
Q 021646            1 MIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAFPLLKGVVATTDVVEACKDVNIAVMVGGFPRKEGMERKDVM   80 (309)
Q Consensus         1 ~~~~g~~~~~~~~~~l~L~D~~~~~~~~~g~~~DL~~~~~~~~~~~~~~~~~~~~l~~aDiVVitag~~~~~~~sr~~~~   80 (309)
                      ||++|++||.+++++|+|+|+++++++++|++|||+|++.+..+.+.+.+++|++++||||||||||.+++||++|.+++
T Consensus         1 ~~~~g~~~g~~~~~~l~L~D~~~~~~~a~g~~~Dl~da~~~~~~~i~~~~~~y~~~~daDiVVitAG~~~k~g~sR~dll   80 (309)
T PLN00135          1 MIARGVMLGPDQPVILHMLDIPPAAEALNGVKMELIDAAFPLLKGVVATTDVVEACKGVNIAVMVGGFPRKEGMERKDVM   80 (309)
T ss_pred             CcccccccCCCCeEEEEEecCcccccchhhHHHHHHhhhHHhcCCcEecCCHHHHhCCCCEEEEeCCCCCCCCCcHHHHH
Confidence            69999999999999999999997669999999999999866555666555569999999999999999999999999999


Q ss_pred             HHhHHHHHHHHHHHhhh-cCCCcEEEEecCchhHHHHHHHHHCCCCCCCc-EEEechhHHHHHHHHHHHHhCCCCCCe-e
Q 021646           81 SKNVSIYKAQASALEKH-AAPNCKVLVVANPANTNALILKEFAPSIPAKN-ITCLTRLDHNRAMGQISERLKVHVSDV-K  157 (309)
Q Consensus        81 ~~N~~i~~~i~~~i~~~-~~p~~~vivvsnPvd~~t~~~~~~~~~~~~~~-ig~gt~lds~R~~~~la~~l~v~~~~v-~  157 (309)
                      ..|++|++++++.|+++ + |+++++++|||||+|||++++. +|+|++| ||+||.|||+|||++||++++++|++| +
T Consensus        81 ~~N~~I~~~i~~~i~~~~~-p~aivivvsNPvDv~t~~~~~~-sg~~~~~vig~gt~LDsaR~r~~la~~l~v~~~~V~~  158 (309)
T PLN00135         81 SKNVSIYKSQASALEKHAA-PDCKVLVVANPANTNALILKEF-APSIPEKNITCLTRLDHNRALGQISERLGVPVSDVKN  158 (309)
T ss_pred             HHHHHHHHHHHHHHHHhcC-CCeEEEEeCCcHHHHHHHHHHH-cCCCCccEEEeeehHHHHHHHHHHHHHhCcChhhcee
Confidence            99999999999999996 7 7999999999999999999999 6888877 899999999999999999999999999 5


Q ss_pred             eeEEEeecCCceeeecCCceeecCCCCcchhhhhcccccchhHHHHHHHhhHHHHHhc-CCcChHHHHHHHHHHHHHHHH
Q 021646          158 NVIIWGNHSSTQYPDVNHATVTTSKGEKPVREAVADDNWLNTEFITTVQQRGAAIIKA-RKLSSALSAASSACDHIRDWV  236 (309)
Q Consensus       158 ~~vV~GehG~s~vp~~S~~~v~~~~~~~pl~~~~~~~~~~~~el~~~v~~~~~~i~~~-kg~t~~~~~a~a~~~~i~~~i  236 (309)
                      ++ ||||||++|||+||+++|+.+++|+|+.+++.+++|+.+++.+++++++++|++. ||+|. +++|+++++++++++
T Consensus       159 ~~-VlGeHG~s~v~~~S~a~v~~~~~g~p~~e~~~~~~~~~~~i~~~v~~~g~~Ii~~~kg~t~-~~ia~a~~~iv~ai~  236 (309)
T PLN00135        159 VI-IWGNHSSTQYPDVNHATVKTPSGEKPVRELVADDAWLNGEFITTVQQRGAAIIKARKLSSA-LSAASSACDHIRDWV  236 (309)
T ss_pred             eE-EEEcCCCceeeccccceEecCCCCcCHHHHhCchhhHHHHHHHHHHHHHHHHHHccCccHH-HHHHHHHHHHHHHHH
Confidence            67 5999999999999999998888999999987665666689999999999999998 55554 677889999998766


Q ss_pred             hCCCCceEEEeeeecCCCCCCCCceEEEEeEEe-cCCcEEEeCCCCCCHHHHHHHHHHHHHHHHHHHHHhhhh
Q 021646          237 LGTPKGTWVSMGVYSDGSYGIPEGLIYSFPVTC-EKGEWSIVKGLKVDEFSRAKMDATAEELAEEKTLAYSCL  308 (309)
Q Consensus       237 ~~~~~~~v~~~sv~~~g~ygi~~~v~~s~Pv~~-~~Gv~~i~~~~~L~~~E~~~l~~s~~~i~~~i~~~~~~~  308 (309)
                      .+.++++++|+|++++|+||+|+++|||+||++ ++|++.+++ ++|+++|+++|++|++.|+++++.+..+|
T Consensus       237 ~~~~~~~v~~vsv~~~g~YGi~~~v~~s~P~vlg~~gve~v~~-l~L~~~E~~~l~~S~~~lk~~~~~~~~~~  308 (309)
T PLN00135        237 LGTPEGTWVSMGVYSDGSYGVPPGLIYSFPVTCEKGEWSIVQG-LSIDEFSRKKMDATAKELKEEKELAYSCL  308 (309)
T ss_pred             hCCcCCeEEEEEEEecCccCCcCCeEEEEEEEEECCEEEEecC-CCCCHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            641389999999999999999889999999986 889998887 99999999999999999999999998887

>TIGR01756 LDH_protist lactate dehydrogenase Back     alignment and domain information
>TIGR01759 MalateDH-SF1 malate dehydrogenase Back     alignment and domain information
>PRK05442 malate dehydrogenase; Provisional Back     alignment and domain information
>TIGR01757 Malate-DH_plant malate dehydrogenase, NADP-dependent Back     alignment and domain information
>COG0039 Mdh Malate/lactate dehydrogenases [Energy production and conversion] Back     alignment and domain information
>PLN00112 malate dehydrogenase (NADP); Provisional Back     alignment and domain information
>cd01338 MDH_choloroplast_like Chloroplast-like malate dehydrogenases Back     alignment and domain information
>cd05295 MDH_like Malate dehydrogenase-like Back     alignment and domain information
>cd00704 MDH Malate dehydrogenase Back     alignment and domain information
>KOG1495 consensus Lactate dehydrogenase [Energy production and conversion] Back     alignment and domain information
>TIGR01758 MDH_euk_cyt malate dehydrogenase, NAD-dependent Back     alignment and domain information
>cd05290 LDH_3 A subgroup of L-lactate dehydrogenases Back     alignment and domain information
>TIGR01771 L-LDH-NAD L-lactate dehydrogenase Back     alignment and domain information
>cd01336 MDH_cytoplasmic_cytosolic Cytoplasmic and cytosolic Malate dehydrogenases Back     alignment and domain information
>PLN02602 lactate dehydrogenase Back     alignment and domain information
>cd05293 LDH_1 A subgroup of L-lactate dehydrogenases Back     alignment and domain information
>PRK00066 ldh L-lactate dehydrogenase; Reviewed Back     alignment and domain information
>cd00300 LDH_like L-lactate dehydrogenase-like enzymes Back     alignment and domain information
>cd05291 HicDH_like L-2-hydroxyisocapronate dehydrogenases and some bacterial L-lactate dehydrogenases Back     alignment and domain information
>KOG1496 consensus Malate dehydrogenase [Energy production and conversion] Back     alignment and domain information
>cd05292 LDH_2 A subgroup of L-lactate dehydrogenases Back     alignment and domain information
>TIGR01763 MalateDH_bact malate dehydrogenase, NAD-dependent Back     alignment and domain information
>PTZ00117 malate dehydrogenase; Provisional Back     alignment and domain information
>TIGR01772 MDH_euk_gproteo malate dehydrogenase, NAD-dependent Back     alignment and domain information
>cd05294 LDH-like_MDH_nadp A lactate dehydrogenases-like structure with malate dehydrogenase enzymatic activity Back     alignment and domain information
>PTZ00082 L-lactate dehydrogenase; Provisional Back     alignment and domain information
>cd01337 MDH_glyoxysomal_mitochondrial Glyoxysomal and mitochondrial malate dehydrogenases Back     alignment and domain information
>cd01339 LDH-like_MDH L-lactate dehydrogenase-like malate dehydrogenase proteins Back     alignment and domain information
>PTZ00325 malate dehydrogenase; Provisional Back     alignment and domain information
>PRK06223 malate dehydrogenase; Reviewed Back     alignment and domain information
>PRK05086 malate dehydrogenase; Provisional Back     alignment and domain information
>PLN00106 malate dehydrogenase Back     alignment and domain information
>cd00650 LDH_MDH_like NAD-dependent, lactate dehydrogenase-like, 2-hydroxycarboxylate dehydrogenase family Back     alignment and domain information
>KOG1494 consensus NAD-dependent malate dehydrogenase [Energy production and conversion] Back     alignment and domain information
>PF02866 Ldh_1_C: lactate/malate dehydrogenase, alpha/beta C-terminal domain Prosite entry for lactate dehydrogenase Prosite entry for malate dehydrogenase; InterPro: IPR022383 L-lactate dehydrogenases are metabolic enzymes which catalyse the conversion of L-lactate to pyruvate, the last step in anaerobic glycolysis [] Back     alignment and domain information
>PF00056 Ldh_1_N: lactate/malate dehydrogenase, NAD binding domain Prosite entry for lactate dehydrogenase Prosite entry for malate dehydrogenase; InterPro: IPR001236 L-lactate dehydrogenases are metabolic enzymes which catalyse the conversion of L-lactate to pyruvate, the last step in anaerobic glycolysis [] Back     alignment and domain information
>cd05197 GH4_glycoside_hydrolases Glycoside Hydrases Family 4 Back     alignment and domain information
>PRK15076 alpha-galactosidase; Provisional Back     alignment and domain information
>cd05296 GH4_P_beta_glucosidase Glycoside Hydrolases Family 4; Phospho-beta-glucosidase Back     alignment and domain information
>cd05298 GH4_GlvA_pagL_like Glycoside Hydrolases Family 4; GlvA- and pagL-like glycosidases Back     alignment and domain information
>cd05297 GH4_alpha_glucosidase_galactosidase Glycoside Hydrolases Family 4; Alpha-glucosidases and alpha-galactosidases Back     alignment and domain information
>COG1486 CelF Alpha-galactosidases/6-phospho-beta-glucosidases, family 4 of glycosyl hydrolases [Carbohydrate transport and metabolism] Back     alignment and domain information
>PF02056 Glyco_hydro_4: Family 4 glycosyl hydrolase; InterPro: IPR001088 O-Glycosyl hydrolases 3 Back     alignment and domain information
>COG1004 Ugd Predicted UDP-glucose 6-dehydrogenase [Cell envelope biogenesis, outer membrane] Back     alignment and domain information
>PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ] Back     alignment and domain information
>PF11975 Glyco_hydro_4C: Family 4 glycosyl hydrolase C-terminal domain; InterPro: IPR022616 This domain is found primarily in bacterial family 4 glycosyl hydrolases Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query309
4mdh_A334 Refined Crystal Structure Of Cytoplasmic Malate Deh 3e-95
5mdh_A333 Crystal Structure Of Ternary Complex Of Porcine Cyt 3e-95
3d5t_A331 Crystal Structure Of Malate Dehydrogenase From Burk 3e-79
1iz9_A327 Crystal Structure Of Malate Dehydrogenase From Ther 4e-79
1bmd_A327 Determinants Of Protein Thermostability Observed In 7e-79
1wze_A327 Structural Basis For Alteration Of Cofactor Specifi 2e-78
1bdm_A327 The Structure At 1.8 Angstroms Resolution Of A Sing 4e-78
1b8p_A329 Malate Dehydrogenase From Aquaspirillum Arcticum Le 5e-78
4h7p_A345 Crystal Structure Of A Putative Cytosolic Malate De 8e-78
1civ_A385 Chloroplast Nadp-Dependent Malate Dehydrogenase Fro 3e-58
7mdh_A375 Structural Basis For Light Acitvation Of A Chloropl 7e-57
3fi9_A343 Crystal Structure Of Malate Dehydrogenase From Porp 2e-15
3gvh_A324 Crystal Structure Of LactateMALATE DEHYDROGENASE FR 1e-09
3nep_X314 1.55a Resolution Structure Of Malate Dehydrogenase 2e-09
1gv1_A310 Structural Basis For Thermophilic Protein Stability 1e-07
3p7m_A321 Structure Of Putative Lactate Dehydrogenase From Fr 2e-07
1gv0_A310 Structural Basis For Thermophilic Protein Stability 3e-07
1guz_A310 Structural Basis For Thermophilic Protein Stability 4e-07
1ez4_A318 Crystal Structure Of Non-Allosteric L-Lactate Dehyd 6e-07
2hjr_A328 Crystal Structure Of Cryptosporidium Parvum Malate 7e-07
1mld_A314 Refined Structure Of Mitochondrial Malate Dehydroge 7e-07
2dfd_A342 Crystal Structure Of Human Malate Dehydrogenase Typ 7e-07
2v65_A331 Apo Ldh From The Psychrophile C. Gunnari Length = 3 9e-07
3tl2_A315 Crystal Structure Of Bacillus Anthracis Str. Ames M 9e-07
1uxh_A309 Large Improvement In The Thermal Stability Of A Tet 1e-06
1guy_A309 Structural Basis For Thermophilic Protein Stability 1e-06
1uxi_A309 Large Improvement In The Thermal Stability Of A Tet 1e-06
1y6j_A318 L-Lactate Dehydrogenase From Clostridium Thermocell 2e-06
1hyg_A313 Crystal Structure Of Mj0490 Gene Product, The Famil 3e-06
1v6a_A332 Crystal Structure Of L-Lactate Dehydrogenase From C 5e-06
1ur5_A309 Stabilization Of A Tetrameric Malate Dehydrogenase 6e-06
9ldt_A332 Design And Synthesis Of New Enzymes Based On The La 6e-06
3pqd_A326 Crystal Structure Of L-Lactate Dehydrogenase From B 1e-05
5ldh_A334 Structure Of The Active Ternary Complex Of Pig Hear 1e-05
3h3f_A331 Rabbit Muscle L-Lactate Dehydrogenase In Complex Wi 2e-05
1i10_A331 Human Muscle L-Lactate Dehydrogenase M Chain, Terna 2e-05
4ajp_A337 Human Ldha In Complex With 2-((4-(4-((3-((2-Methyl- 2e-05
3pqe_A326 Crystal Structure Of L-Lactate Dehydrogenase From B 2e-05
2zqy_A326 T-State Structure Of Allosteric L-Lactate Dehydroge 3e-05
1llc_A325 Structure Determination Of The Allosteric L-Lactate 3e-05
6ldh_A330 Refined Crystal Structure Of Dogfish M4 Apo-Lactate 4e-05
1ldm_A329 Refined Crystal Structure Of Dogfish M4 Apo-Lactate 4e-05
4aj1_A331 Rat Ldha In Complex With N-(2-(Methylamino)-1,3- Be 5e-05
4aj4_A332 Rat Ldha In Complex With 4-((2-Allylsulfanyl-1,3-Be 5e-05
1i0z_A333 Human Heart L-Lactate Dehydrogenase H Chain, Ternar 7e-05
1t2f_A333 Human B Lactate Dehydrogenase Complexed With Nad+ A 7e-05
3vku_A326 Penta Mutant Of Lactobacillus Casei Lactate Dehydro 1e-04
3d0o_A317 Crystal Structure Of Lactate Dehydrogenase From Sta 1e-04
3h3j_A317 Crystal Structure Of Lactate Dehydrogenase Mutant ( 2e-04
1ldn_A316 Structure Of A Ternary Complex Of An Allosteric Lac 3e-04
2ldx_A331 Characterization Of The Antigenic Sites On The Refi 3e-04
1ldb_A317 Structure Determination And Refinement Of Bacillus 3e-04
1o6z_A303 1.95 A Resolution Structure Of (r207s,r292s) Mutant 3e-04
2x0r_A304 R207s,R292s Mutant Of Malate Dehydrogenase From The 4e-04
1hlp_A303 Structural Features Stabilizing Halophilic Malate D 4e-04
2x0i_A294 2.9 A Resolution Structure Of Malate Dehydrogenase 4e-04
2j5k_A304 2.0 A Resolution Structure Of The Wild Type Malate 4e-04
2hlp_A303 Crystal Structure Of The E267r Mutant Of A Halophil 4e-04
>pdb|4MDH|A Chain A, Refined Crystal Structure Of Cytoplasmic Malate Dehydrogenase At 2.5-Angstroms Resolution Length = 334 Back     alignment and structure 
Iteration: 1

 Score =  344 bits (883), Expect = 3e-95,   Method: Compositional matrix adjust.
 Identities = 168/291 (57%), Positives = 207/291 (71%), Gaps = 1/291 (0%)
Query: 2   IARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAFPLLKGVVATTDVVEACKDVNI 61
           I  G + G DQP+IL +LDI P    L+GV MEL D A PLLK V+AT     A KD+++
Sbjct: 24  IGNGSVFGKDQPIILVLLDITPMMGVLDGVLMELQDCALPLLKDVIATDKEEIAFKDLDV 83
Query: 62  AVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEKHAAPNCKVLVVANPANTNALILKEF 121
           A++VG  PR++GMERKD++  NV I+K Q +AL+K+A  + KV+VV NPANTN L   + 
Sbjct: 84  AILVGSMPRRDGMERKDLLKANVKIFKCQGAALDKYAKKSVKVIVVGNPANTNCLTASKS 143
Query: 122 APSIPAKNITCLTRLDHNRAMGQISERLKVHVSDVKNVIIWGNHSSTQYPDVNHATVTTS 181
           APSIP +N +CLTRLDHNRA  QI+ +L V   DVKNVIIWGNHSSTQYPDVNHA V   
Sbjct: 144 APSIPKENFSCLTRLDHNRAKAQIALKLGVTSDDVKNVIIWGNHSSTQYPDVNHAKVKLQ 203
Query: 182 KGEKPVREAVADDNWLNTEFITTVQQRGAAIIKARKXXXXXXXXXXXCDHIRDWVLGTPK 241
             E  V EAV DD+WL  EFITTVQQRGAA+IKARK           CDH+RD   GTP+
Sbjct: 204 AKEVGVYEAVKDDSWLKGEFITTVQQRGAAVIKARKLSSAMSAAKAICDHVRDIWFGTPE 263
Query: 242 GTWVSMGVYSDG-SYGIPEGLIYSFPVTCEKGEWSIVKGLKVDEFSRAKMD 291
           G +VSMG+ SDG SYG+P+ L+YSFPVT +   W IV+GL +++FSR KMD
Sbjct: 264 GEFVSMGIISDGNSYGVPDDLLYSFPVTIKDKTWKIVEGLPINDFSREKMD 314
>pdb|5MDH|A Chain A, Crystal Structure Of Ternary Complex Of Porcine Cytoplasmic Malate Dehydrogenase Alpha-Ketomalonate And Tnad At 2.4 Angstroms Resolution Length = 333 Back     alignment and structure
>pdb|3D5T|A Chain A, Crystal Structure Of Malate Dehydrogenase From Burkholderia Pseudomallei Length = 331 Back     alignment and structure
>pdb|1IZ9|A Chain A, Crystal Structure Of Malate Dehydrogenase From Thermus Thermophilus Hb8 Length = 327 Back     alignment and structure
>pdb|1BMD|A Chain A, Determinants Of Protein Thermostability Observed In The 1.9 Angstroms Crystal Structure Of Malate Dehydrogenase From The Thermophilic Bacterium Thermus Flavus Length = 327 Back     alignment and structure
>pdb|1WZE|A Chain A, Structural Basis For Alteration Of Cofactor Specificity Of Malate Dehydrogenase From Thermus Flavus Length = 327 Back     alignment and structure
>pdb|1BDM|A Chain A, The Structure At 1.8 Angstroms Resolution Of A Single Site Mutant (T189i) Of Malate Dehydrogenase From Thermus Flavus With Increased Enzymatic Activity Length = 327 Back     alignment and structure
>pdb|1B8P|A Chain A, Malate Dehydrogenase From Aquaspirillum Arcticum Length = 329 Back     alignment and structure
>pdb|4H7P|A Chain A, Crystal Structure Of A Putative Cytosolic Malate Dehydrogenase From Leishmania Major Friedlin Length = 345 Back     alignment and structure
>pdb|1CIV|A Chain A, Chloroplast Nadp-Dependent Malate Dehydrogenase From Flaveria Bidentis Length = 385 Back     alignment and structure
>pdb|7MDH|A Chain A, Structural Basis For Light Acitvation Of A Chloroplast Enzyme. The Structure Of Sorghum Nadp-Malate Dehydrogenase In Its Oxidized Form Length = 375 Back     alignment and structure
>pdb|3FI9|A Chain A, Crystal Structure Of Malate Dehydrogenase From Porphyromonas Gingivalis Length = 343 Back     alignment and structure
>pdb|3GVH|A Chain A, Crystal Structure Of LactateMALATE DEHYDROGENASE FROM Brucella Melitensis Length = 324 Back     alignment and structure
>pdb|3NEP|X Chain X, 1.55a Resolution Structure Of Malate Dehydrogenase From Salinibacter Ruber Length = 314 Back     alignment and structure
>pdb|1GV1|A Chain A, Structural Basis For Thermophilic Protein Stability: Structures Of Thermophilic And Mesophilic Malate Dehydrogenases Length = 310 Back     alignment and structure
>pdb|3P7M|A Chain A, Structure Of Putative Lactate Dehydrogenase From Francisella Tularensis Subsp. Tularensis Schu S4 Length = 321 Back     alignment and structure
>pdb|1GV0|A Chain A, Structural Basis For Thermophilic Protein Stability: Structures Of Thermophilic And Mesophilic Malate Dehydrogenases Length = 310 Back     alignment and structure
>pdb|1GUZ|A Chain A, Structural Basis For Thermophilic Protein Stability: Structures Of Thermophilic And Mesophilic Malate Dehydrogenases Length = 310 Back     alignment and structure
>pdb|1EZ4|A Chain A, Crystal Structure Of Non-Allosteric L-Lactate Dehydrogenase From Lactobacillus Pentosus At 2.3 Angstrom Resolution Length = 318 Back     alignment and structure
>pdb|2HJR|A Chain A, Crystal Structure Of Cryptosporidium Parvum Malate Dehydrogenase Length = 328 Back     alignment and structure
>pdb|1MLD|A Chain A, Refined Structure Of Mitochondrial Malate Dehydrogenase From Porcine Heart And The Consensus Structure For Dicarboxylic Acid Oxidoreductases Length = 314 Back     alignment and structure
>pdb|2DFD|A Chain A, Crystal Structure Of Human Malate Dehydrogenase Type 2 Length = 342 Back     alignment and structure
>pdb|2V65|A Chain A, Apo Ldh From The Psychrophile C. Gunnari Length = 331 Back     alignment and structure
>pdb|3TL2|A Chain A, Crystal Structure Of Bacillus Anthracis Str. Ames Malate Dehydrogenase In Closed Conformation Length = 315 Back     alignment and structure
>pdb|1UXH|A Chain A, Large Improvement In The Thermal Stability Of A Tetrameric Malate Dehydrogenase By Single Point Mutations At The Dimer-Dimer Interface Length = 309 Back     alignment and structure
>pdb|1GUY|A Chain A, Structural Basis For Thermophilic Protein Stability: Structures Of Thermophilic And Mesophilic Malate Dehydrogenases Length = 309 Back     alignment and structure
>pdb|1UXI|A Chain A, Large Improvement In The Thermal Stability Of A Tetrameric Malate Dehydrogenase By Single Point Mutations At The Dimer-Dimer Interface Length = 309 Back     alignment and structure
>pdb|1Y6J|A Chain A, L-Lactate Dehydrogenase From Clostridium Thermocellum Cth-1135 Length = 318 Back     alignment and structure
>pdb|1HYG|A Chain A, Crystal Structure Of Mj0490 Gene Product, The Family Of LactateMALATE DEHYDROGENASE Length = 313 Back     alignment and structure
>pdb|1V6A|A Chain A, Crystal Structure Of L-Lactate Dehydrogenase From Cyprinus Carpio Length = 332 Back     alignment and structure
>pdb|1UR5|A Chain A, Stabilization Of A Tetrameric Malate Dehydrogenase By Introduction Of A Disulfide Bridge At The DimerDIMER Interface Length = 309 Back     alignment and structure
>pdb|9LDT|A Chain A, Design And Synthesis Of New Enzymes Based On The Lactate Dehydrogenase Framework Length = 332 Back     alignment and structure
>pdb|3PQD|A Chain A, Crystal Structure Of L-Lactate Dehydrogenase From Bacillus Subtilis Complexed With Fbp And Nad+ Length = 326 Back     alignment and structure
>pdb|5LDH|A Chain A, Structure Of The Active Ternary Complex Of Pig Heart Lactate Dehydrogenase With S-Lac-Nad At 2.7 Angstroms Resolution Length = 334 Back     alignment and structure
>pdb|3H3F|A Chain A, Rabbit Muscle L-Lactate Dehydrogenase In Complex With Nadh And Oxamate Length = 331 Back     alignment and structure
>pdb|1I10|A Chain A, Human Muscle L-Lactate Dehydrogenase M Chain, Ternary Complex With Nadh And Oxamate Length = 331 Back     alignment and structure
>pdb|4AJP|A Chain A, Human Ldha In Complex With 2-((4-(4-((3-((2-Methyl-1,3- Benzothiazol-6yl)amino)-3-Oxo-Propyl)amino)-4-Oxo-Butyl) Phenyl)methyl)propanedioic Acid Length = 337 Back     alignment and structure
>pdb|3PQE|A Chain A, Crystal Structure Of L-Lactate Dehydrogenase From Bacillus Subtilis With H171c Mutation Length = 326 Back     alignment and structure
>pdb|2ZQY|A Chain A, T-State Structure Of Allosteric L-Lactate Dehydrogenase From Lactobacillus Casei Length = 326 Back     alignment and structure
>pdb|1LLC|A Chain A, Structure Determination Of The Allosteric L-Lactate Dehydrogenase From Lactobacillus Casei At 3.0 Angstroms Resolution Length = 325 Back     alignment and structure
>pdb|6LDH|A Chain A, Refined Crystal Structure Of Dogfish M4 Apo-Lactate Dehydrogenase Length = 330 Back     alignment and structure
>pdb|1LDM|A Chain A, Refined Crystal Structure Of Dogfish M4 Apo-Lactate Dehydrogenase Length = 329 Back     alignment and structure
>pdb|4AJ1|A Chain A, Rat Ldha In Complex With N-(2-(Methylamino)-1,3- Benzothiazol-6-Yl)acetamide Length = 331 Back     alignment and structure
>pdb|4AJ4|A Chain A, Rat Ldha In Complex With 4-((2-Allylsulfanyl-1,3-Benzothizol-6-Yl) Amino)-4-Oxo-Butanoic Acid Length = 332 Back     alignment and structure
>pdb|1I0Z|A Chain A, Human Heart L-Lactate Dehydrogenase H Chain, Ternary Complex With Nadh And Oxamate Length = 333 Back     alignment and structure
>pdb|1T2F|A Chain A, Human B Lactate Dehydrogenase Complexed With Nad+ And 4- Hydroxy-1,2,5-Oxadiazole-3-Carboxylic Acid Length = 333 Back     alignment and structure
>pdb|3VKU|A Chain A, Penta Mutant Of Lactobacillus Casei Lactate Dehydrogenase Length = 326 Back     alignment and structure
>pdb|3D0O|A Chain A, Crystal Structure Of Lactate Dehydrogenase From Staphylococcus Aureus Length = 317 Back     alignment and structure
>pdb|3H3J|A Chain A, Crystal Structure Of Lactate Dehydrogenase Mutant (A85r) Fro Staphylococcus Aureus Complexed With Nad And Pyruvate Length = 317 Back     alignment and structure
>pdb|1LDN|A Chain A, Structure Of A Ternary Complex Of An Allosteric Lactate Dehydrogenase From Bacillus Stearothermophilus At 2.5 Angstroms Resolution Length = 316 Back     alignment and structure
>pdb|2LDX|A Chain A, Characterization Of The Antigenic Sites On The Refined 3- Angstroms Resolution Structure Of Mouse Testicular Lactate Dehydrogenase C4 Length = 331 Back     alignment and structure
>pdb|1LDB|A Chain A, Structure Determination And Refinement Of Bacillus Stearothermophilus Lactate Dehydrogenase Length = 317 Back     alignment and structure
>pdb|1O6Z|A Chain A, 1.95 A Resolution Structure Of (r207s,r292s) Mutant Of Malate Dehydrogenase From The Halophilic Archaeon Haloarcula Marismortui (holo Form) Length = 303 Back     alignment and structure
>pdb|2X0R|A Chain A, R207s,R292s Mutant Of Malate Dehydrogenase From The Halophilic Archaeon Haloarcula Marismortui (Holo Form) Length = 304 Back     alignment and structure
>pdb|1HLP|A Chain A, Structural Features Stabilizing Halophilic Malate Dehydrogenase From An Archaebacterium Length = 303 Back     alignment and structure
>pdb|2X0I|A Chain A, 2.9 A Resolution Structure Of Malate Dehydrogenase From Archaeoglobus Fulgidus In Complex With Nadh Length = 294 Back     alignment and structure
>pdb|2J5K|A Chain A, 2.0 A Resolution Structure Of The Wild Type Malate Dehydrogenase From Haloarcula Marismortui (radiation Damage Series) Length = 304 Back     alignment and structure
>pdb|2HLP|A Chain A, Crystal Structure Of The E267r Mutant Of A Halophilic Malate Dehydrogenase In The Apo Form Length = 303 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query309
1y7t_A327 Malate dehydrogenase; NAD-dependent-MDH-NADPH comp 1e-163
1b8p_A329 Protein (malate dehydrogenase); oxidoreductase; 1. 1e-162
5mdh_A333 Malate dehydrogenase; oxidoreductase, (NAD(A)-CHOH 1e-161
7mdh_A375 Protein (malate dehydrogenase); chloroplastic mala 1e-155
3fi9_A343 Malate dehydrogenase; structural genomics, oxidore 2e-98
3p7m_A321 Malate dehydrogenase; putative dehydrogenase, enzy 1e-19
1guz_A310 Malate dehydrogenase; oxidoreductase, tricarboxyli 4e-19
2hjr_A328 Malate dehydrogenase; malaria, structural genomics 5e-19
3nep_X314 Malate dehydrogenase; halophIle, molecular adpatat 6e-19
1o6z_A303 MDH, malate dehydrogenase; halophilic, ION-binding 9e-19
2d4a_B308 Malate dehydrogenase; archaea, hyperthermophIle, o 9e-19
3tl2_A315 Malate dehydrogenase; center for structural genomi 1e-18
1pzg_A331 LDH, lactate dehydrogenase; apicomplexa, APAD, tet 2e-18
1ur5_A309 Malate dehydrogenase; oxidoreductase, tricarboxyli 2e-18
2ewd_A317 Lactate dehydrogenase,; protein-substrate_cofactor 3e-18
3gvi_A324 Malate dehydrogenase; NAD, oxidoreductase, tricarb 3e-18
4aj2_A331 L-lactate dehydrogenase A chain; oxidoreductase-in 2e-16
2zqz_A326 L-LDH, L-lactate dehydrogenase; oxidoreductase, ro 3e-16
1hye_A313 L-lactate/malate dehydrogenase; nucleotide binding 4e-16
1t2d_A322 LDH-P, L-lactate dehydrogenase; ternary complex, o 4e-16
1mld_A314 Malate dehydrogenase; oxidoreductase(NAD(A)-CHOH(D 4e-16
3ldh_A330 Lactate dehydrogenase; oxidoreductase, CHOH donor, 5e-16
1a5z_A319 L-lactate dehydrogenase; oxidoreductase, glycolysi 1e-15
1oju_A294 MDH, malate dehydrogenase; hyperthermophilic, oxid 2e-15
1lld_A319 L-lactate dehydrogenase; oxidoreductase(CHOH (D)-N 5e-15
3pqe_A326 L-LDH, L-lactate dehydrogenase; FBP, oxidoreductas 5e-15
1ldn_A316 L-lactate dehydrogenase; oxidoreductase(CHOH(D)-NA 1e-14
2i6t_A303 Ubiquitin-conjugating enzyme E2-like isoform A; L- 1e-14
1smk_A326 Malate dehydrogenase, glyoxysomal; tricarboxylic c 2e-14
2xxj_A310 L-LDH, L-lactate dehydrogenase; oxidoreductase, hy 2e-14
3d0o_A317 L-LDH 1, L-lactate dehydrogenase 1; cytoplasm, gly 3e-14
1ez4_A318 Lactate dehydrogenase; rossmann fold, oxidoreducta 3e-14
3hhp_A312 Malate dehydrogenase; MDH, citric acid cycle, TCA 3e-14
1y6j_A318 L-lactate dehydrogenase; southeast collaboratory f 3e-14
2v6b_A304 L-LDH, L-lactate dehydrogenase; oxidoreductase, ra 5e-14
1hyh_A309 L-hicdh, L-2-hydroxyisocaproate dehydrogenase; L-2 2e-10
1s6y_A 450 6-phospho-beta-glucosidase; hydrolase, structural 7e-04
>1y7t_A Malate dehydrogenase; NAD-dependent-MDH-NADPH complex, oxidoreductase; HET: NDP; 1.65A {Thermus thermophilus} SCOP: c.2.1.5 d.162.1.1 PDB: 1iz9_A* 2cvq_A* 1bmd_A* 1bdm_A* 1wze_A* 1wzi_A* Length = 327 Back     alignment and structure
 Score =  457 bits (1177), Expect = e-163
 Identities = 159/301 (52%), Positives = 206/301 (68%), Gaps = 5/301 (1%)

Query: 1   MIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAFPLLKGVVATTDVVEACKDVN 60
            IA G MLG DQPVIL +L+I  A +AL GV MEL D AFPLL G+ AT D   A KD +
Sbjct: 23  RIAAGEMLGKDQPVILQLLEIPQAMKALEGVVMELEDCAFPLLAGLEATDDPKVAFKDAD 82

Query: 61  IAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEKHAAPNCKVLVVANPANTNALILKE 120
            A++VG  PRK GMER+D++  N  I+  Q  AL + A  + KVLVV NPANTNALI  +
Sbjct: 83  YALLVGAAPRKAGMERRDLLQVNGKIFTEQGRALAEVAKKDVKVLVVGNPANTNALIAYK 142

Query: 121 FAPSIPAKNITCLTRLDHNRAMGQISERLKVHVSDVKNVIIWGNHSSTQYPDVNHATVTT 180
            AP +  +N T +TRLDHNRA  Q++++    V  ++ + +WGNHSST +PD+ HA V  
Sbjct: 143 NAPGLNPRNFTAMTRLDHNRAKAQLAKKTGTGVDRIRRMTVWGNHSSTMFPDLFHAEV-- 200

Query: 181 SKGEKPVREAVADDNWLNTEFITTVQQRGAAIIKARKLSSALSAASSACDHIRDWVLGTP 240
               +P  E V D  W    FI TV QRGAAII+AR  SSA SAA++A +HIRDW LGTP
Sbjct: 201 --DGRPALELV-DMEWYEKVFIPTVAQRGAAIIQARGASSAASAANAAIEHIRDWALGTP 257

Query: 241 KGTWVSMGVYSDGSYGIPEGLIYSFPVTCEKGEWSIVKGLKVDEFSRAKMDATAEELAEE 300
           +G WVSM V S G YGIPEG++YSFPVT + G + +V+GL+++EF+R +M+ TA+EL +E
Sbjct: 258 EGDWVSMAVPSQGEYGIPEGIVYSFPVTAKDGAYRVVEGLEINEFARKRMEITAQELLDE 317

Query: 301 K 301
            
Sbjct: 318 M 318
>1b8p_A Protein (malate dehydrogenase); oxidoreductase; 1.90A {Aquaspirillum arcticum} SCOP: c.2.1.5 d.162.1.1 PDB: 1b8u_A* 1b8v_A* 3d5t_A Length = 329 Back     alignment and structure
>5mdh_A Malate dehydrogenase; oxidoreductase, (NAD(A)-CHOH(D)); HET: NAD; 2.40A {Sus scrofa} SCOP: c.2.1.5 d.162.1.1 PDB: 4mdh_A* Length = 333 Back     alignment and structure
>7mdh_A Protein (malate dehydrogenase); chloroplastic malate dehydrogenase (NADP+), activated by LIG chloroplastic malate dehydrogenase; 2.40A {Sorghum bicolor} SCOP: c.2.1.5 d.162.1.1 PDB: 1civ_A* Length = 375 Back     alignment and structure
>3fi9_A Malate dehydrogenase; structural genomics, oxidoreductase, PSI-2, protein structur initiative; 1.90A {Porphyromonas gingivalis} Length = 343 Back     alignment and structure
>3p7m_A Malate dehydrogenase; putative dehydrogenase, enzyme, structural genomics, center structural genomics of infectious diseases, csgid; 2.20A {Francisella tularensis} Length = 321 Back     alignment and structure
>1guz_A Malate dehydrogenase; oxidoreductase, tricarboxylic acid cycle, NAD; HET: NAD; 2.0A {Chlorobium vibrioforme} SCOP: c.2.1.5 d.162.1.1 PDB: 1gv1_A 1gv0_A* Length = 310 Back     alignment and structure
>2hjr_A Malate dehydrogenase; malaria, structural genomics, structural genomics consortium, SGC, oxidoreductase; HET: CIT APR; 2.20A {Cryptosporidium parvum} Length = 328 Back     alignment and structure
>3nep_X Malate dehydrogenase; halophIle, molecular adpatation, NAD, oxidoreductase, tricarboxylic acid cycle; 1.55A {Salinibacter ruber} Length = 314 Back     alignment and structure
>1o6z_A MDH, malate dehydrogenase; halophilic, ION-binding, protein-solvent interaction, oxidoreductase; HET: NAD; 1.95A {Haloarcula marismortui} SCOP: c.2.1.5 d.162.1.1 PDB: 1gt2_A* 2x0r_A* 2j5k_A 2j5q_A 2j5r_A 1d3a_A 1hlp_A* 2hlp_A Length = 303 Back     alignment and structure
>2d4a_B Malate dehydrogenase; archaea, hyperthermophIle, oxidoreductase; 2.87A {Aeropyrum pernix} Length = 308 Back     alignment and structure
>3tl2_A Malate dehydrogenase; center for structural genomics of infectious diseases, csgid dehydrogenase, oxidoreductase, citric acid cycle; 1.70A {Bacillus anthracis} Length = 315 Back     alignment and structure
>1pzg_A LDH, lactate dehydrogenase; apicomplexa, APAD, tetramer, rossmann fold, oxidoreductase; HET: CME A3D; 1.60A {Toxoplasma gondii} SCOP: c.2.1.5 d.162.1.1 PDB: 1pzf_A* 1pze_A* 1pzh_A* 3om9_A* 1sov_A 1sow_A* 3czm_A* Length = 331 Back     alignment and structure
>1ur5_A Malate dehydrogenase; oxidoreductase, tricarboxylic acid cycle; HET: NAD; 1.75A {Chloroflexus aurantiacus} SCOP: c.2.1.5 d.162.1.1 PDB: 1uxg_A* 1guy_A* 1uxk_A* 1uxh_A* 1uxj_A* 1uxi_A* Length = 309 Back     alignment and structure
>2ewd_A Lactate dehydrogenase,; protein-substrate_cofactor analog complex, oxidoreductase; HET: A3D; 2.00A {Cryptosporidium parvum} PDB: 2frm_A 2fn7_A* 2fnz_A* 2fm3_A Length = 317 Back     alignment and structure
>3gvi_A Malate dehydrogenase; NAD, oxidoreductase, tricarboxylic acid cycle, structural genomics; HET: ADP; 2.25A {Brucella melitensis biovar ABORTUS2308} PDB: 3gvh_A* Length = 324 Back     alignment and structure
>4aj2_A L-lactate dehydrogenase A chain; oxidoreductase-inhibitor complex, fragment-based LEAD genera inhibitors; HET: 52C; 1.75A {Rattus norvegicus} PDB: 4aj1_A* 4aje_A* 4ajh_A* 4aji_A* 4ajj_A* 4ajk_A* 4ajl_A* 4ajn_A* 4ajo_A* 4al4_A* 4aj4_A* 4ajp_A* 1i10_A* 3h3f_A* 9ldt_A* 9ldb_A* 1t2f_A* 1i0z_A* 5ldh_A* 1ldm_A* ... Length = 331 Back     alignment and structure
>2zqz_A L-LDH, L-lactate dehydrogenase; oxidoreductase, rossmann fold, cytoplasm, glycolysis, NAD, phosphoprotein; 2.50A {Lactobacillus casei} PDB: 2zqy_A 3vkv_A* 1llc_A* Length = 326 Back     alignment and structure
>1hye_A L-lactate/malate dehydrogenase; nucleotide binding domain, oxidoreductase; HET: NAP; 1.90A {Methanocaldococcus jannaschii} SCOP: c.2.1.5 d.162.1.1 PDB: 1hyg_A* Length = 313 Back     alignment and structure
>1t2d_A LDH-P, L-lactate dehydrogenase; ternary complex, oxidoreductase; HET: NAD; 1.10A {Plasmodium falciparum} SCOP: c.2.1.5 d.162.1.1 PDB: 1t25_A* 1t26_A* 1t2c_A* 1t24_A* 2x8l_A 2ydn_A* 2a94_A* 1u4s_A* 1u5a_A* 1u5c_A* 1u4o_A* 1t2e_A* 1xiv_A* 1ceq_A 1ldg_A* 1cet_A* 1oc4_A* 2a92_A* 2aa3_A* Length = 322 Back     alignment and structure
>1mld_A Malate dehydrogenase; oxidoreductase(NAD(A)-CHOH(D)); HET: CIT; 1.83A {Sus scrofa} SCOP: c.2.1.5 d.162.1.1 PDB: 2dfd_A* Length = 314 Back     alignment and structure
>3ldh_A Lactate dehydrogenase; oxidoreductase, CHOH donor, NAD acceptor; HET: NAD; 3.00A {Squalus acanthias} SCOP: i.12.1.1 Length = 330 Back     alignment and structure
>1a5z_A L-lactate dehydrogenase; oxidoreductase, glycolysis, hyperthermophiles, thermotoga MA protein stability; HET: FBP NAD; 2.10A {Thermotoga maritima} SCOP: c.2.1.5 d.162.1.1 Length = 319 Back     alignment and structure
>1oju_A MDH, malate dehydrogenase; hyperthermophilic, oxidoreductase; HET: ENA; 2.79A {Archaeoglobus fulgidus} SCOP: c.2.1.5 d.162.1.1 PDB: 1ojs_A* 2x0i_A* 2x0j_A* Length = 294 Back     alignment and structure
>1lld_A L-lactate dehydrogenase; oxidoreductase(CHOH (D)-NAD (A)); HET: NAD; 2.00A {Bifidobacterium longum subsp} SCOP: c.2.1.5 d.162.1.1 PDB: 1lth_T* Length = 319 Back     alignment and structure
>3pqe_A L-LDH, L-lactate dehydrogenase; FBP, oxidoreductase; 2.20A {Bacillus subtilis} PDB: 3pqf_A* 3pqd_A* Length = 326 Back     alignment and structure
>1ldn_A L-lactate dehydrogenase; oxidoreductase(CHOH(D)-NAD(A)); HET: FBP NAD; 2.50A {Geobacillus stearothermophilus} SCOP: c.2.1.5 d.162.1.1 PDB: 1ldb_A 2ldb_A* Length = 316 Back     alignment and structure
>2i6t_A Ubiquitin-conjugating enzyme E2-like isoform A; L-lactate dehydrogenase, oxidoreductase, ubiquitin-protein L unknown function; 2.10A {Homo sapiens} PDB: 3dl2_A Length = 303 Back     alignment and structure
>1smk_A Malate dehydrogenase, glyoxysomal; tricarboxylic cycle, glyoxysome, NAD, glyoxylate bypass, oxidoreductase; HET: CIT; 2.50A {Citrullus lanatus} PDB: 1sev_A Length = 326 Back     alignment and structure
>2xxj_A L-LDH, L-lactate dehydrogenase; oxidoreductase, hyperthermophIle; HET: NAD; 1.964A {Thermus thermophilus} PDB: 2xxb_A* 3zzn_A* 2v7p_A* 2e37_A* 2v6m_A* 2xxe_A 4a73_A Length = 310 Back     alignment and structure
>3d0o_A L-LDH 1, L-lactate dehydrogenase 1; cytoplasm, glycolysis, NAD, oxidoreductase, phosphoprotein; 1.80A {Staphylococcus aureus} PDB: 3d4p_A* 3h3j_A* Length = 317 Back     alignment and structure
>1ez4_A Lactate dehydrogenase; rossmann fold, oxidoreductase; HET: NAD; 2.30A {Lactobacillus pentosus} SCOP: c.2.1.5 d.162.1.1 Length = 318 Back     alignment and structure
>3hhp_A Malate dehydrogenase; MDH, citric acid cycle, TCA cycle, NAD, oxidoreductase, tricarboxylic acid cycle; 1.45A {Escherichia coli k-12} PDB: 2pwz_A 2cmd_A* 1emd_A* 1ib6_A* 1ie3_A* 4e0b_A* Length = 312 Back     alignment and structure
>1y6j_A L-lactate dehydrogenase; southeast collaboratory for structural genomics, secsg, protein struc initiative, PSI, oxidoreductase; 3.01A {Clostridium thermocellum} SCOP: c.2.1.5 d.162.1.1 Length = 318 Back     alignment and structure
>2v6b_A L-LDH, L-lactate dehydrogenase; oxidoreductase, radioresistance, NAD, cytoplasm, mesophilic, glycolysis; 2.50A {Deinococcus radiodurans} Length = 304 Back     alignment and structure
>1hyh_A L-hicdh, L-2-hydroxyisocaproate dehydrogenase; L-2-hydroxycarboxylate dehydrogenase, L-lactate dehydrogenas oxidoreductase (CHOH(D)-NAD+(A)); HET: NAD; 2.20A {Weissella confusa} SCOP: c.2.1.5 d.162.1.1 Length = 309 Back     alignment and structure
>1s6y_A 6-phospho-beta-glucosidase; hydrolase, structural genomics, PSI, protein structure initi midwest center for structural genomics; 2.31A {Geobacillus stearothermophilus} SCOP: c.2.1.5 d.162.1.2 Length = 450 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query309
7mdh_A375 Protein (malate dehydrogenase); chloroplastic mala 100.0
4h7p_A345 Malate dehydrogenase; ssgcid, structural G seattle 100.0
5mdh_A333 Malate dehydrogenase; oxidoreductase, (NAD(A)-CHOH 100.0
4aj2_A331 L-lactate dehydrogenase A chain; oxidoreductase-in 100.0
3vku_A326 L-LDH, L-lactate dehydrogenase; rossmann fold, NAD 100.0
3nep_X314 Malate dehydrogenase; halophIle, molecular adpatat 100.0
3pqe_A326 L-LDH, L-lactate dehydrogenase; FBP, oxidoreductas 100.0
2x0j_A294 Malate dehydrogenase; oxidoreductase, hyperthermop 100.0
3p7m_A321 Malate dehydrogenase; putative dehydrogenase, enzy 100.0
3tl2_A315 Malate dehydrogenase; center for structural genomi 100.0
1oju_A294 MDH, malate dehydrogenase; hyperthermophilic, oxid 100.0
3fi9_A343 Malate dehydrogenase; structural genomics, oxidore 100.0
3gvi_A324 Malate dehydrogenase; NAD, oxidoreductase, tricarb 100.0
1b8p_A329 Protein (malate dehydrogenase); oxidoreductase; 1. 100.0
1ez4_A318 Lactate dehydrogenase; rossmann fold, oxidoreducta 100.0
2zqz_A326 L-LDH, L-lactate dehydrogenase; oxidoreductase, ro 100.0
2d4a_B308 Malate dehydrogenase; archaea, hyperthermophIle, o 100.0
2xxj_A310 L-LDH, L-lactate dehydrogenase; oxidoreductase, hy 100.0
3ldh_A330 Lactate dehydrogenase; oxidoreductase, CHOH donor, 100.0
3hhp_A312 Malate dehydrogenase; MDH, citric acid cycle, TCA 100.0
3d0o_A317 L-LDH 1, L-lactate dehydrogenase 1; cytoplasm, gly 100.0
1y6j_A318 L-lactate dehydrogenase; southeast collaboratory f 100.0
1o6z_A303 MDH, malate dehydrogenase; halophilic, ION-binding 100.0
1ldn_A316 L-lactate dehydrogenase; oxidoreductase(CHOH(D)-NA 100.0
1ur5_A309 Malate dehydrogenase; oxidoreductase, tricarboxyli 100.0
1hye_A313 L-lactate/malate dehydrogenase; nucleotide binding 100.0
1t2d_A322 LDH-P, L-lactate dehydrogenase; ternary complex, o 100.0
2i6t_A303 Ubiquitin-conjugating enzyme E2-like isoform A; L- 100.0
1guz_A310 Malate dehydrogenase; oxidoreductase, tricarboxyli 100.0
2hjr_A328 Malate dehydrogenase; malaria, structural genomics 100.0
2v6b_A304 L-LDH, L-lactate dehydrogenase; oxidoreductase, ra 100.0
1pzg_A331 LDH, lactate dehydrogenase; apicomplexa, APAD, tet 100.0
1mld_A314 Malate dehydrogenase; oxidoreductase(NAD(A)-CHOH(D 100.0
1a5z_A319 L-lactate dehydrogenase; oxidoreductase, glycolysi 100.0
1y7t_A327 Malate dehydrogenase; NAD-dependent-MDH-NADPH comp 100.0
1smk_A326 Malate dehydrogenase, glyoxysomal; tricarboxylic c 100.0
1hyh_A309 L-hicdh, L-2-hydroxyisocaproate dehydrogenase; L-2 100.0
2ewd_A317 Lactate dehydrogenase,; protein-substrate_cofactor 100.0
1lld_A319 L-lactate dehydrogenase; oxidoreductase(CHOH (D)-N 100.0
1up7_A417 6-phospho-beta-glucosidase; hydrolase, family4 hyd 100.0
1s6y_A450 6-phospho-beta-glucosidase; hydrolase, structural 100.0
1u8x_X472 Maltose-6'-phosphate glucosidase; structural genom 100.0
3fef_A450 Putative glucosidase LPLD; gulosidase, structural 99.94
1obb_A480 Maltase, alpha-glucosidase; glycosidase, sulfinic 99.88
3u95_A 477 Glycoside hydrolase, family 4; hydrolysis, cytosol 99.81
3g79_A 478 NDP-N-acetyl-D-galactosaminuronic acid dehydrogen; 90.91
3gg2_A 450 Sugar dehydrogenase, UDP-glucose/GDP-mannose dehyd 85.35
2o3j_A 481 UDP-glucose 6-dehydrogenase; structural genomics, 84.03
1dlj_A402 UDP-glucose dehydrogenase; rossmann fold, ternary 80.93
>7mdh_A Protein (malate dehydrogenase); chloroplastic malate dehydrogenase (NADP+), activated by LIG chloroplastic malate dehydrogenase; 2.40A {Sorghum bicolor} SCOP: c.2.1.5 d.162.1.1 PDB: 1civ_A* Back     alignment and structure
Probab=100.00  E-value=1.1e-74  Score=545.72  Aligned_cols=304  Identities=42%  Similarity=0.674  Sum_probs=280.7

Q ss_pred             cccccccCCCCeEEEEEEecCCccchhhHHHHHHhhccCCCCcceeecCChhhhcCCCcEEEEeCCCCCCCCCCHHHHHH
Q 021646            2 IARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAFPLLKGVVATTDVVEACKDVNIAVMVGGFPRKEGMERKDVMS   81 (309)
Q Consensus         2 ~~~g~~~~~~~~~~l~L~D~~~~~~~~~g~~~DL~~~~~~~~~~~~~~~~~~~~l~~aDiVVitag~~~~~~~sr~~~~~   81 (309)
                      |+.+.+|+.+|++.|+++|+..++++++|++|||+|+++++.+++.+.+++|++++||||||||+|.||+|||+|+||++
T Consensus        52 l~~~~l~~e~~~l~L~d~d~~~~~~~~~G~amDL~h~~~p~~~~v~i~~~~y~~~~daDvVVitag~prkpG~tR~DLl~  131 (375)
T 7mdh_A           52 LASGEVFGQDQPIALKLLGSERSFQALEGVAMELEDSLYPLLREVSIGIDPYEVFEDVDWALLIGAKPRGPGMERAALLD  131 (375)
T ss_dssp             HHHTTTTCTTCCEEEEEECCGGGHHHHHHHHHHHHTTTCTTEEEEEEESCHHHHTTTCSEEEECCCCCCCTTCCHHHHHH
T ss_pred             HHcCCcCCCCceeEEEecCccchhhhhHHHHHhHHhhhhhhcCCcEEecCCHHHhCCCCEEEEcCCCCCCCCCCHHHHHH
Confidence            67899999999999999999767888999999999999777777888888999999999999999999999999999999


Q ss_pred             HhHHHHHHHHHHHhhhcCCCcEEEEecCchhHHHHHHHHHCCCCCCCcEEEechhHHHHHHHHHHHHhCCCCCCeeeeEE
Q 021646           82 KNVSIYKAQASALEKHAAPNCKVLVVANPANTNALILKEFAPSIPAKNITCLTRLDHNRAMGQISERLKVHVSDVKNVII  161 (309)
Q Consensus        82 ~N~~i~~~i~~~i~~~~~p~~~vivvsnPvd~~t~~~~~~~~~~~~~~ig~gt~lds~R~~~~la~~l~v~~~~v~~~vV  161 (309)
                      .|++|++++++.|++++.|+++++|+|||+|+|||++|++++++|+++||+||.|||+||+++||++++++|++|++++|
T Consensus       132 ~N~~I~k~i~~~i~~~a~p~~ivlVvsNPvD~~t~ia~k~sg~~~~rvig~gT~LDsaR~r~~lA~~lgv~~~~V~~v~V  211 (375)
T 7mdh_A          132 INGQIFADQGKALNAVASKNVKVLVVGNPCNTNALICLKNAPDIPAKNFHALTRLDENRAKCQLALKAGVFYDKVSNVTI  211 (375)
T ss_dssp             HHHHHHHHHHHHHHHHSCTTCEEEECSSSHHHHHHHHHHTCTTSCGGGEEECCHHHHHHHHHHHHHHTTSCGGGEECCEE
T ss_pred             HHHHHHHHHHHHHHHhcCCCeEEEEecCchhHHHHHHHHHcCCCCccEEEeeehHHHHHHHHHHHHHhCcChhhcccceE
Confidence            99999999999999983379999999999999999999996566777799999999999999999999999999998557


Q ss_pred             EeecCCceeeecCCceeecCCCCcchhhhhcccccchhHHHHHHHhhHHHHHhcCCcChHHHHHHHHHHHHHHHHhCCCC
Q 021646          162 WGNHSSTQYPDVNHATVTTSKGEKPVREAVADDNWLNTEFITTVQQRGAAIIKARKLSSALSAASSACDHIRDWVLGTPK  241 (309)
Q Consensus       162 ~GehG~s~vp~~S~~~v~~~~~~~pl~~~~~~~~~~~~el~~~v~~~~~~i~~~kg~t~~~~~a~a~~~~i~~~i~~~~~  241 (309)
                      |||||+|+||+||+++|    +|+|+.+++.+++|..+++.++|+++|++|++.||+|+++++|.++++.|.+|+.+.++
T Consensus       212 ~GeHgdt~vp~~S~a~V----~G~pl~~~~~~~~~~~~~i~~~v~~~g~eII~~kG~ts~a~aa~~i~~~i~~~l~g~d~  287 (375)
T 7mdh_A          212 WGNHSTTQVPDFLNAKI----DGRPVKEVIKRTKWLEEEFTITVQKRGGALIQKWGRSSAASTAVSIADAIKSLVTPTPE  287 (375)
T ss_dssp             EBCSSTTCEEECSSCEE----TTEEGGGTCCCHHHHHHHHHHHHHTHHHHHHHHTSSCCHHHHHHHHHHHHHHHHSCCCT
T ss_pred             EecCCCceeeeeecccC----CCEEhhHhccchhhHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcCCCC
Confidence            99999999999999999    99999999877778778899999999999999999999877777889999888875448


Q ss_pred             ceEEEeeeecCC-CCCCCCceEEEEeEEe-cCCcEEEeCCCCCCHHHHHHHHHHHHHHHHHHHHHhhhhC
Q 021646          242 GTWVSMGVYSDG-SYGIPEGLIYSFPVTC-EKGEWSIVKGLKVDEFSRAKMDATAEELAEEKTLAYSCLN  309 (309)
Q Consensus       242 ~~v~~~sv~~~g-~ygi~~~v~~s~Pv~~-~~Gv~~i~~~~~L~~~E~~~l~~s~~~i~~~i~~~~~~~~  309 (309)
                      ++++|+|++++| +||+|+|+|||+||++ ++|+++++++++|+++|+++|++|+++|+++++.+..+|.
T Consensus       288 ~~v~~vs~~~~G~~YGi~~dv~~s~P~vlg~~Gv~~iv~~l~L~~~E~~~l~~Sa~~L~~e~~~~~~~~~  357 (375)
T 7mdh_A          288 GDWFSTGVYTTGNPYGIAEDIVFSMPCRSKGDGDYELATDVSNDDFLWERIKKSEAELLAEKKCVAHLTG  357 (375)
T ss_dssp             TCCEEEEEECTTCSSCCCSSSEEEEEEECCSSSCCEECCCCCCCHHHHHHHHHHHHHHHHHHHHTHHHHT
T ss_pred             CeEEEEEEEeCCccCCCCCceEEEEEEEEcCCeeEEecCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            999999999999 7999889999999986 8999999955899999999999999999999998887763
>4h7p_A Malate dehydrogenase; ssgcid, structural G seattle structural genomics center for infectious disease, oxidoreductase; 1.30A {Leishmania major} Back     alignment and structure
>5mdh_A Malate dehydrogenase; oxidoreductase, (NAD(A)-CHOH(D)); HET: NAD; 2.40A {Sus scrofa} SCOP: c.2.1.5 d.162.1.1 PDB: 4mdh_A* Back     alignment and structure
>4aj2_A L-lactate dehydrogenase A chain; oxidoreductase-inhibitor complex, fragment-based LEAD genera inhibitors; HET: 52C; 1.75A {Rattus norvegicus} PDB: 4aj1_A* 4aje_A* 4ajh_A* 4aji_A* 4ajj_A* 4ajk_A* 4ajl_A* 4ajn_A* 4ajo_A* 4al4_A* 4aj4_A* 4ajp_A* 1i10_A* 3h3f_A* 9ldt_A* 9ldb_A* 1t2f_A* 1i0z_A* 5ldh_A* 1ldm_A* ... Back     alignment and structure
>3vku_A L-LDH, L-lactate dehydrogenase; rossmann fold, NADH binding, oxidoreductase; 1.96A {Lactobacillus casei} PDB: 2zqz_A 2zqy_A 3vkv_A* 1llc_A* Back     alignment and structure
>3nep_X Malate dehydrogenase; halophIle, molecular adpatation, NAD, oxidoreductase, tricarboxylic acid cycle; 1.55A {Salinibacter ruber} Back     alignment and structure
>3pqe_A L-LDH, L-lactate dehydrogenase; FBP, oxidoreductase; 2.20A {Bacillus subtilis} PDB: 3pqf_A* 3pqd_A* Back     alignment and structure
>2x0j_A Malate dehydrogenase; oxidoreductase, hyperthermophilic, tricarboxylic acid cycle; HET: ENA; 2.79A {Archaeoglobus fulgidus dsm 4304} PDB: 2x0i_A* Back     alignment and structure
>3p7m_A Malate dehydrogenase; putative dehydrogenase, enzyme, structural genomics, center structural genomics of infectious diseases, csgid; 2.20A {Francisella tularensis} Back     alignment and structure
>3tl2_A Malate dehydrogenase; center for structural genomics of infectious diseases, csgid dehydrogenase, oxidoreductase, citric acid cycle; 1.70A {Bacillus anthracis} Back     alignment and structure
>1oju_A MDH, malate dehydrogenase; hyperthermophilic, oxidoreductase; HET: ENA; 2.79A {Archaeoglobus fulgidus} PDB: 1ojs_A* 2x0i_A* 2x0j_A* Back     alignment and structure
>3fi9_A Malate dehydrogenase; structural genomics, oxidoreductase, PSI-2, protein structur initiative; 1.90A {Porphyromonas gingivalis} Back     alignment and structure
>3gvi_A Malate dehydrogenase; NAD, oxidoreductase, tricarboxylic acid cycle, structural genomics; HET: ADP; 2.25A {Brucella melitensis biovar ABORTUS2308} PDB: 3gvh_A* Back     alignment and structure
>1b8p_A Protein (malate dehydrogenase); oxidoreductase; 1.90A {Aquaspirillum arcticum} SCOP: c.2.1.5 d.162.1.1 PDB: 1b8u_A* 1b8v_A* 3d5t_A Back     alignment and structure
>1ez4_A Lactate dehydrogenase; rossmann fold, oxidoreductase; HET: NAD; 2.30A {Lactobacillus pentosus} SCOP: c.2.1.5 d.162.1.1 Back     alignment and structure
>2zqz_A L-LDH, L-lactate dehydrogenase; oxidoreductase, rossmann fold, cytoplasm, glycolysis, NAD, phosphoprotein; 2.50A {Lactobacillus casei} PDB: 2zqy_A 3vkv_A* 1llc_A* Back     alignment and structure
>2d4a_B Malate dehydrogenase; archaea, hyperthermophIle, oxidoreductase; 2.87A {Aeropyrum pernix} Back     alignment and structure
>2xxj_A L-LDH, L-lactate dehydrogenase; oxidoreductase, hyperthermophIle; HET: NAD; 1.964A {Thermus thermophilus} PDB: 2xxb_A* 3zzn_A* 2v7p_A* 2e37_A* 2v6m_A* 2xxe_A 4a73_A Back     alignment and structure
>3ldh_A Lactate dehydrogenase; oxidoreductase, CHOH donor, NAD acceptor; HET: NAD; 3.00A {Squalus acanthias} SCOP: i.12.1.1 Back     alignment and structure
>3hhp_A Malate dehydrogenase; MDH, citric acid cycle, TCA cycle, NAD, oxidoreductase, tricarboxylic acid cycle; 1.45A {Escherichia coli k-12} PDB: 2pwz_A 2cmd_A* 1emd_A* 1ib6_A* 1ie3_A* 4e0b_A* Back     alignment and structure
>3d0o_A L-LDH 1, L-lactate dehydrogenase 1; cytoplasm, glycolysis, NAD, oxidoreductase, phosphoprotein; 1.80A {Staphylococcus aureus} PDB: 3d4p_A* 3h3j_A* Back     alignment and structure
>1y6j_A L-lactate dehydrogenase; southeast collaboratory for structural genomics, secsg, protein struc initiative, PSI, oxidoreductase; 3.01A {Clostridium thermocellum} SCOP: c.2.1.5 d.162.1.1 Back     alignment and structure
>1o6z_A MDH, malate dehydrogenase; halophilic, ION-binding, protein-solvent interaction, oxidoreductase; HET: NAD; 1.95A {Haloarcula marismortui} SCOP: c.2.1.5 d.162.1.1 PDB: 1gt2_A* 2x0r_A* 2j5k_A 2j5q_A 2j5r_A 1d3a_A 1hlp_A* 2hlp_A Back     alignment and structure
>1ldn_A L-lactate dehydrogenase; oxidoreductase(CHOH(D)-NAD(A)); HET: FBP NAD; 2.50A {Geobacillus stearothermophilus} SCOP: c.2.1.5 d.162.1.1 PDB: 1ldb_A 2ldb_A* Back     alignment and structure
>1ur5_A Malate dehydrogenase; oxidoreductase, tricarboxylic acid cycle; HET: NAD; 1.75A {Chloroflexus aurantiacus} SCOP: c.2.1.5 d.162.1.1 PDB: 1uxg_A* 1guy_A* 1uxk_A* 1uxh_A* 1uxj_A* 1uxi_A* Back     alignment and structure
>1hye_A L-lactate/malate dehydrogenase; nucleotide binding domain, oxidoreductase; HET: NAP; 1.90A {Methanocaldococcus jannaschii} SCOP: c.2.1.5 d.162.1.1 PDB: 1hyg_A* Back     alignment and structure
>1t2d_A LDH-P, L-lactate dehydrogenase; ternary complex, oxidoreductase; HET: NAD; 1.10A {Plasmodium falciparum} SCOP: c.2.1.5 d.162.1.1 PDB: 1t25_A* 1t26_A* 1t2c_A* 1t24_A* 2x8l_A 2ydn_A* 2a94_A* 1u4s_A* 1u5a_A* 1u5c_A* 1u4o_A* 1t2e_A* 1xiv_A* 1ceq_A 1ldg_A* 1cet_A* 1oc4_A* 2a92_A* 2aa3_A* Back     alignment and structure
>2i6t_A Ubiquitin-conjugating enzyme E2-like isoform A; L-lactate dehydrogenase, oxidoreductase, ubiquitin-protein L unknown function; 2.10A {Homo sapiens} PDB: 3dl2_A Back     alignment and structure
>1guz_A Malate dehydrogenase; oxidoreductase, tricarboxylic acid cycle, NAD; HET: NAD; 2.0A {Chlorobium vibrioforme} SCOP: c.2.1.5 d.162.1.1 PDB: 1gv1_A 1gv0_A* Back     alignment and structure
>2hjr_A Malate dehydrogenase; malaria, structural genomics, structural genomics consortium, SGC, oxidoreductase; HET: CIT APR; 2.20A {Cryptosporidium parvum} Back     alignment and structure
>2v6b_A L-LDH, L-lactate dehydrogenase; oxidoreductase, radioresistance, NAD, cytoplasm, mesophilic, glycolysis; 2.50A {Deinococcus radiodurans} Back     alignment and structure
>1pzg_A LDH, lactate dehydrogenase; apicomplexa, APAD, tetramer, rossmann fold, oxidoreductase; HET: CME A3D; 1.60A {Toxoplasma gondii} SCOP: c.2.1.5 d.162.1.1 PDB: 1pzf_A* 1pze_A* 1pzh_A* 3om9_A* 1sov_A 1sow_A* 3czm_A* Back     alignment and structure
>1mld_A Malate dehydrogenase; oxidoreductase(NAD(A)-CHOH(D)); HET: CIT; 1.83A {Sus scrofa} SCOP: c.2.1.5 d.162.1.1 PDB: 2dfd_A* Back     alignment and structure
>1a5z_A L-lactate dehydrogenase; oxidoreductase, glycolysis, hyperthermophiles, thermotoga MA protein stability; HET: FBP NAD; 2.10A {Thermotoga maritima} SCOP: c.2.1.5 d.162.1.1 Back     alignment and structure
>1y7t_A Malate dehydrogenase; NAD-dependent-MDH-NADPH complex, oxidoreductase; HET: NDP; 1.65A {Thermus thermophilus} SCOP: c.2.1.5 d.162.1.1 PDB: 1iz9_A* 2cvq_A* 1bmd_A* 1bdm_A* 1wze_A* 1wzi_A* Back     alignment and structure
>1smk_A Malate dehydrogenase, glyoxysomal; tricarboxylic cycle, glyoxysome, NAD, glyoxylate bypass, oxidoreductase; HET: CIT; 2.50A {Citrullus lanatus} PDB: 1sev_A Back     alignment and structure
>1hyh_A L-hicdh, L-2-hydroxyisocaproate dehydrogenase; L-2-hydroxycarboxylate dehydrogenase, L-lactate dehydrogenas oxidoreductase (CHOH(D)-NAD+(A)); HET: NAD; 2.20A {Weissella confusa} SCOP: c.2.1.5 d.162.1.1 Back     alignment and structure
>2ewd_A Lactate dehydrogenase,; protein-substrate_cofactor analog complex, oxidoreductase; HET: A3D; 2.00A {Cryptosporidium parvum} PDB: 2frm_A 2fn7_A* 2fnz_A* 2fm3_A Back     alignment and structure
>1lld_A L-lactate dehydrogenase; oxidoreductase(CHOH (D)-NAD (A)); HET: NAD; 2.00A {Bifidobacterium longum subsp} SCOP: c.2.1.5 d.162.1.1 PDB: 1lth_T* Back     alignment and structure
>1up7_A 6-phospho-beta-glucosidase; hydrolase, family4 hydrolase, Na dependent; HET: G6P NAD; 2.4A {Thermotoga maritima} SCOP: c.2.1.5 d.162.1.2 PDB: 1up6_A* 1up4_A Back     alignment and structure
>1s6y_A 6-phospho-beta-glucosidase; hydrolase, structural genomics, PSI, protein structure initi midwest center for structural genomics; 2.31A {Geobacillus stearothermophilus} SCOP: c.2.1.5 d.162.1.2 Back     alignment and structure
>1u8x_X Maltose-6'-phosphate glucosidase; structural genomics, PSI, protein structure initiative, MCSG glucosidase, NAD-dependent; HET: G6P NAD; 2.05A {Bacillus subtilis} SCOP: c.2.1.5 d.162.1.2 Back     alignment and structure
>3fef_A Putative glucosidase LPLD; gulosidase, structural genomics, unknown function, glycosidase, hydrolase, manganese, metal-binding, NAD, PSI- 2; 2.20A {Bacillus subtilis} Back     alignment and structure
>1obb_A Maltase, alpha-glucosidase; glycosidase, sulfinic acid, NAD+, maltose, hydrolase; HET: MAL NAD; 1.90A {Thermotoga maritima} SCOP: c.2.1.5 d.162.1.2 Back     alignment and structure
>3u95_A Glycoside hydrolase, family 4; hydrolysis, cytosol; 2.00A {Thermotoga neapolitana} PDB: 1vjt_A* Back     alignment and structure
>3g79_A NDP-N-acetyl-D-galactosaminuronic acid dehydrogen; structural genomics, protein structure initiative; 2.40A {Methanosarcina mazei GO1} Back     alignment and structure
>3gg2_A Sugar dehydrogenase, UDP-glucose/GDP-mannose dehydrogenase family; structural genomics, oxidoreductase, PSI-2; HET: UGA; 1.70A {Porphyromonas gingivalis} Back     alignment and structure
>2o3j_A UDP-glucose 6-dehydrogenase; structural genomics, PSI-2, prote structure initiative, NEW YORK SGX research center for STRU genomics; 1.88A {Caenorhabditis elegans} Back     alignment and structure
>1dlj_A UDP-glucose dehydrogenase; rossmann fold, ternary complex, crystallographic dimer, oxidoreductase; HET: NAI UGA; 1.80A {Streptococcus pyogenes} SCOP: a.100.1.4 c.2.1.6 c.26.3.1 PDB: 1dli_A* Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 309
d7mdha2188 d.162.1.1 (A:198-385) Malate dehydrogenase {Sorghu 6e-59
d5mdha2179 d.162.1.1 (A:155-333) Malate dehydrogenase {Pig (S 2e-57
d1y7ta2173 d.162.1.1 (A:154-332) Malate dehydrogenase {Thermu 2e-50
d7mdha1175 c.2.1.5 (A:23-197) Malate dehydrogenase {Sorghum ( 1e-44
d1b8pa2171 d.162.1.1 (A:159-329) Malate dehydrogenase {Aquasp 6e-41
d5mdha1154 c.2.1.5 (A:1-154) Malate dehydrogenase {Pig (Sus s 8e-34
d1y7ta1154 c.2.1.5 (A:0-153) Malate dehydrogenase {Thermus th 8e-33
d1ldma2169 d.162.1.1 (A:161-329) Lactate dehydrogenase {Dogfi 1e-32
d1i0za2172 d.162.1.1 (A:161-332) Lactate dehydrogenase {Human 1e-32
d2ldxa2172 d.162.1.1 (A:160-331) Lactate dehydrogenase {Mouse 9e-32
d1guza2163 d.162.1.1 (A:143-305) Malate dehydrogenase {Chloro 9e-32
d1llda2170 d.162.1.1 (A:150-319) Lactate dehydrogenase {Bifid 6e-31
d2cmda2167 d.162.1.1 (A:146-312) Malate dehydrogenase {Escher 3e-30
d1uxja2164 d.162.1.1 (A:144-307) Malate dehydrogenase {Chloro 6e-30
d1y6ja2169 d.162.1.1 (A:149-317) Lactate dehydrogenase {Clost 1e-29
d1mlda2169 d.162.1.1 (A:145-313) Malate dehydrogenase {Pig (S 3e-29
d1pzga2174 d.162.1.1 (A:164-334) Lactate dehydrogenase {Toxop 2e-28
d1ldna2168 d.162.1.1 (A:163-330) Lactate dehydrogenase {Bacil 5e-28
d1hyea2168 d.162.1.1 (A:146-313) MJ0490, lactate/malate dehyd 4e-27
d1ez4a2171 d.162.1.1 (A:163-334) Lactate dehydrogenase {Lacto 5e-27
d1llca2172 d.162.1.1 (A:165-334) Lactate dehydrogenase {Lacto 2e-26
d1a5za2172 d.162.1.1 (A:164-333) Lactate dehydrogenase {Therm 2e-26
d1hyha2163 d.162.1.1 (A:167-329) L-2-hydroxyisocapronate dehy 8e-25
d1t2da2165 d.162.1.1 (A:151-315) Lactate dehydrogenase {Malar 9e-24
d1o6za2161 d.162.1.1 (A:163-330) Malate dehydrogenase {Archae 9e-22
d2cmda1145 c.2.1.5 (A:1-145) Malate dehydrogenase {Escherichi 2e-17
d1mlda1144 c.2.1.5 (A:1-144) Malate dehydrogenase {Pig (Sus s 8e-16
d1o6za1142 c.2.1.5 (A:22-162) Malate dehydrogenase {Archaeon 4e-14
d1guza1142 c.2.1.5 (A:1-142) Malate dehydrogenase {Chlorobium 1e-13
d1llda1143 c.2.1.5 (A:7-149) Lactate dehydrogenase {Bifidobac 7e-13
d1a5za1140 c.2.1.5 (A:22-163) Lactate dehydrogenase {Thermoto 2e-11
d1ojua1142 c.2.1.5 (A:22-163) Malate dehydrogenase {Archaeon 1e-10
d1ez4a1146 c.2.1.5 (A:16-162) Lactate dehydrogenase {Lactobac 5e-10
d1hyea1145 c.2.1.5 (A:1-145) MJ0490, lactate/malate dehydroge 9e-10
d1hyha1146 c.2.1.5 (A:21-166) L-2-hydroxyisocapronate dehydro 5e-09
d1up7a1162 c.2.1.5 (A:1-162) 6-phospho-beta-glucosidase {Ther 5e-09
d1ldna1148 c.2.1.5 (A:15-162) Lactate dehydrogenase {Bacillus 1e-08
d1y6ja1142 c.2.1.5 (A:7-148) Lactate dehydrogenase {Clostridi 1e-08
d1uxja1142 c.2.1.5 (A:2-143) Malate dehydrogenase {Chloroflex 3e-08
d2ldxa1159 c.2.1.5 (A:1-159) Lactate dehydrogenase {Mouse (Mu 5e-08
d1i0za1160 c.2.1.5 (A:1-160) Lactate dehydrogenase {Human (Ho 1e-07
d1u8xx1167 c.2.1.5 (X:3-169) Maltose-6'-phosphate glucosidase 4e-07
d1pzga1154 c.2.1.5 (A:14-163) Lactate dehydrogenase {Toxoplas 2e-06
d1s6ya1169 c.2.1.5 (A:4-172) 6-phospho-beta-glucosidase {Baci 7e-06
d1t2da1150 c.2.1.5 (A:1-150) Lactate dehydrogenase {Malaria p 2e-05
d1obba1171 c.2.1.5 (A:2-172) Alpha-glucosidase AglA {Thermoto 3e-04
>d7mdha2 d.162.1.1 (A:198-385) Malate dehydrogenase {Sorghum (Sorghum vulgare), chloroplast [TaxId: 4558]} Length = 188 Back     information, alignment and structure

class: Alpha and beta proteins (a+b)
fold: LDH C-terminal domain-like
superfamily: LDH C-terminal domain-like
family: Lactate & malate dehydrogenases, C-terminal domain
domain: Malate dehydrogenase
species: Sorghum (Sorghum vulgare), chloroplast [TaxId: 4558]

 Score =  185 bits (470), Expect = 6e-59
 Identities = 68/170 (40%), Positives = 96/170 (56%), Gaps = 6/170 (3%)

Query: 134 TRLDHNRAMGQISERLKVHVSDVKNVIIWGNHSSTQYPDVNHATVTTSKGEKPVREAVAD 193
           TRLD NRA  Q++ +  V    V NV IWGNHS+TQ PD  +A +      +PV+E +  
Sbjct: 1   TRLDENRAKCQLALKAGVFYDKVSNVTIWGNHSTTQVPDFLNAKIDG----RPVKEVIKR 56

Query: 194 DNWLNTEFITTVQQRGAAIIKARKLSSALSAASSACDHIRDWVLGTPKGTWVSMGVYSDG 253
             WL  EF  TVQ+RG A+I+    SSA S A S  D I+  V  TP+G W S GVY+ G
Sbjct: 57  TKWLEEEFTITVQKRGGALIQKWGRSSAASTAVSIADAIKSLVTPTPEGDWFSTGVYTTG 116

Query: 254 S-YGIPEGLIYSFPVTCEK-GEWSIVKGLKVDEFSRAKMDATAEELAEEK 301
           + YGI E +++S P   +  G++ +   +  D+F   ++  +  EL  EK
Sbjct: 117 NPYGIAEDIVFSMPCRSKGDGDYELATDVSNDDFLWERIKKSEAELLAEK 166
>d5mdha2 d.162.1.1 (A:155-333) Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 9823]} Length = 179 Back     information, alignment and structure
>d1y7ta2 d.162.1.1 (A:154-332) Malate dehydrogenase {Thermus thermophilus [TaxId: 274]} Length = 173 Back     information, alignment and structure
>d7mdha1 c.2.1.5 (A:23-197) Malate dehydrogenase {Sorghum (Sorghum vulgare), chloroplast [TaxId: 4558]} Length = 175 Back     information, alignment and structure
>d1b8pa2 d.162.1.1 (A:159-329) Malate dehydrogenase {Aquaspirillum arcticum [TaxId: 87645]} Length = 171 Back     information, alignment and structure
>d5mdha1 c.2.1.5 (A:1-154) Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 9823]} Length = 154 Back     information, alignment and structure
>d1y7ta1 c.2.1.5 (A:0-153) Malate dehydrogenase {Thermus thermophilus [TaxId: 274]} Length = 154 Back     information, alignment and structure
>d1ldma2 d.162.1.1 (A:161-329) Lactate dehydrogenase {Dogfish (Squalus acanthias) [TaxId: 7797]} Length = 169 Back     information, alignment and structure
>d1i0za2 d.162.1.1 (A:161-332) Lactate dehydrogenase {Human (Homo sapiens), heart isoform (H chain) [TaxId: 9606]} Length = 172 Back     information, alignment and structure
>d2ldxa2 d.162.1.1 (A:160-331) Lactate dehydrogenase {Mouse (Mus musculus) [TaxId: 10090]} Length = 172 Back     information, alignment and structure
>d1guza2 d.162.1.1 (A:143-305) Malate dehydrogenase {Chlorobium vibrioforme [TaxId: 1098]} Length = 163 Back     information, alignment and structure
>d1llda2 d.162.1.1 (A:150-319) Lactate dehydrogenase {Bifidobacterium longum, strain am101-2 [TaxId: 216816]} Length = 170 Back     information, alignment and structure
>d2cmda2 d.162.1.1 (A:146-312) Malate dehydrogenase {Escherichia coli [TaxId: 562]} Length = 167 Back     information, alignment and structure
>d1uxja2 d.162.1.1 (A:144-307) Malate dehydrogenase {Chloroflexus aurantiacus [TaxId: 1108]} Length = 164 Back     information, alignment and structure
>d1y6ja2 d.162.1.1 (A:149-317) Lactate dehydrogenase {Clostridium thermocellum [TaxId: 1515]} Length = 169 Back     information, alignment and structure
>d1mlda2 d.162.1.1 (A:145-313) Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 9823]} Length = 169 Back     information, alignment and structure
>d1pzga2 d.162.1.1 (A:164-334) Lactate dehydrogenase {Toxoplasma gondii [TaxId: 5811]} Length = 174 Back     information, alignment and structure
>d1ldna2 d.162.1.1 (A:163-330) Lactate dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]} Length = 168 Back     information, alignment and structure
>d1hyea2 d.162.1.1 (A:146-313) MJ0490, lactate/malate dehydrogenase {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 168 Back     information, alignment and structure
>d1ez4a2 d.162.1.1 (A:163-334) Lactate dehydrogenase {Lactobacillus pentosus [TaxId: 1589]} Length = 171 Back     information, alignment and structure
>d1llca2 d.162.1.1 (A:165-334) Lactate dehydrogenase {Lactobacillus casei [TaxId: 1582]} Length = 172 Back     information, alignment and structure
>d1a5za2 d.162.1.1 (A:164-333) Lactate dehydrogenase {Thermotoga maritima [TaxId: 2336]} Length = 172 Back     information, alignment and structure
>d1hyha2 d.162.1.1 (A:167-329) L-2-hydroxyisocapronate dehydrogenase, L-HICDH {Lactobacillus confusus [TaxId: 1583]} Length = 163 Back     information, alignment and structure
>d1t2da2 d.162.1.1 (A:151-315) Lactate dehydrogenase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]} Length = 165 Back     information, alignment and structure
>d1o6za2 d.162.1.1 (A:163-330) Malate dehydrogenase {Archaeon Haloarcula marismortui [TaxId: 2238]} Length = 161 Back     information, alignment and structure
>d2cmda1 c.2.1.5 (A:1-145) Malate dehydrogenase {Escherichia coli [TaxId: 562]} Length = 145 Back     information, alignment and structure
>d1mlda1 c.2.1.5 (A:1-144) Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 9823]} Length = 144 Back     information, alignment and structure
>d1o6za1 c.2.1.5 (A:22-162) Malate dehydrogenase {Archaeon Haloarcula marismortui [TaxId: 2238]} Length = 142 Back     information, alignment and structure
>d1guza1 c.2.1.5 (A:1-142) Malate dehydrogenase {Chlorobium vibrioforme [TaxId: 1098]} Length = 142 Back     information, alignment and structure
>d1llda1 c.2.1.5 (A:7-149) Lactate dehydrogenase {Bifidobacterium longum, strain am101-2 [TaxId: 216816]} Length = 143 Back     information, alignment and structure
>d1a5za1 c.2.1.5 (A:22-163) Lactate dehydrogenase {Thermotoga maritima [TaxId: 2336]} Length = 140 Back     information, alignment and structure
>d1ojua1 c.2.1.5 (A:22-163) Malate dehydrogenase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} Length = 142 Back     information, alignment and structure
>d1ez4a1 c.2.1.5 (A:16-162) Lactate dehydrogenase {Lactobacillus pentosus [TaxId: 1589]} Length = 146 Back     information, alignment and structure
>d1hyea1 c.2.1.5 (A:1-145) MJ0490, lactate/malate dehydrogenase {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 145 Back     information, alignment and structure
>d1hyha1 c.2.1.5 (A:21-166) L-2-hydroxyisocapronate dehydrogenase, L-HICDH {Lactobacillus confusus [TaxId: 1583]} Length = 146 Back     information, alignment and structure
>d1up7a1 c.2.1.5 (A:1-162) 6-phospho-beta-glucosidase {Thermotoga maritima [TaxId: 2336]} Length = 162 Back     information, alignment and structure
>d1ldna1 c.2.1.5 (A:15-162) Lactate dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]} Length = 148 Back     information, alignment and structure
>d1y6ja1 c.2.1.5 (A:7-148) Lactate dehydrogenase {Clostridium thermocellum [TaxId: 1515]} Length = 142 Back     information, alignment and structure
>d1uxja1 c.2.1.5 (A:2-143) Malate dehydrogenase {Chloroflexus aurantiacus [TaxId: 1108]} Length = 142 Back     information, alignment and structure
>d2ldxa1 c.2.1.5 (A:1-159) Lactate dehydrogenase {Mouse (Mus musculus) [TaxId: 10090]} Length = 159 Back     information, alignment and structure
>d1i0za1 c.2.1.5 (A:1-160) Lactate dehydrogenase {Human (Homo sapiens), heart isoform (H chain) [TaxId: 9606]} Length = 160 Back     information, alignment and structure
>d1u8xx1 c.2.1.5 (X:3-169) Maltose-6'-phosphate glucosidase GlvA {Bacillus subtilis [TaxId: 1423]} Length = 167 Back     information, alignment and structure
>d1pzga1 c.2.1.5 (A:14-163) Lactate dehydrogenase {Toxoplasma gondii [TaxId: 5811]} Length = 154 Back     information, alignment and structure
>d1s6ya1 c.2.1.5 (A:4-172) 6-phospho-beta-glucosidase {Bacillus stearothermophilus [TaxId: 1422]} Length = 169 Back     information, alignment and structure
>d1t2da1 c.2.1.5 (A:1-150) Lactate dehydrogenase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]} Length = 150 Back     information, alignment and structure
>d1obba1 c.2.1.5 (A:2-172) Alpha-glucosidase AglA {Thermotoga maritima [TaxId: 2336]} Length = 171 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query309
d7mdha2188 Malate dehydrogenase {Sorghum (Sorghum vulgare), c 100.0
d5mdha2179 Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 982 100.0
d1y7ta2173 Malate dehydrogenase {Thermus thermophilus [TaxId: 100.0
d1b8pa2171 Malate dehydrogenase {Aquaspirillum arcticum [TaxI 100.0
d1hyea2168 MJ0490, lactate/malate dehydrogenase {Archaeon Met 100.0
d1i0za2172 Lactate dehydrogenase {Human (Homo sapiens), heart 100.0
d1ojua2152 Lactate dehydrogenase {Archaeon Archaeoglobus fulg 100.0
d1y6ja2169 Lactate dehydrogenase {Clostridium thermocellum [T 100.0
d1llda2170 Lactate dehydrogenase {Bifidobacterium longum, str 100.0
d1hyha2163 L-2-hydroxyisocapronate dehydrogenase, L-HICDH {La 100.0
d1ez4a2171 Lactate dehydrogenase {Lactobacillus pentosus [Tax 100.0
d1a5za2172 Lactate dehydrogenase {Thermotoga maritima [TaxId: 100.0
d1uxja2164 Malate dehydrogenase {Chloroflexus aurantiacus [Ta 100.0
d1ldma2169 Lactate dehydrogenase {Dogfish (Squalus acanthias) 100.0
d1pzga2174 Lactate dehydrogenase {Toxoplasma gondii [TaxId: 5 100.0
d1guza2163 Malate dehydrogenase {Chlorobium vibrioforme [TaxI 100.0
d2ldxa2172 Lactate dehydrogenase {Mouse (Mus musculus) [TaxId 100.0
d1t2da2165 Lactate dehydrogenase {Malaria parasite (Plasmodiu 100.0
d1ldna2168 Lactate dehydrogenase {Bacillus stearothermophilus 100.0
d1llca2172 Lactate dehydrogenase {Lactobacillus casei [TaxId: 100.0
d1o6za2161 Malate dehydrogenase {Archaeon Haloarcula marismor 100.0
d7mdha1175 Malate dehydrogenase {Sorghum (Sorghum vulgare), c 99.98
d1mlda2169 Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 982 99.97
d1llda1143 Lactate dehydrogenase {Bifidobacterium longum, str 99.97
d5mdha1154 Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 982 99.97
d1o6za1142 Malate dehydrogenase {Archaeon Haloarcula marismor 99.97
d2cmda2167 Malate dehydrogenase {Escherichia coli [TaxId: 562 99.97
d1y7ta1154 Malate dehydrogenase {Thermus thermophilus [TaxId: 99.96
d1ldna1148 Lactate dehydrogenase {Bacillus stearothermophilus 99.96
d1y6ja1142 Lactate dehydrogenase {Clostridium thermocellum [T 99.96
d1i0za1160 Lactate dehydrogenase {Human (Homo sapiens), heart 99.96
d1ojua1142 Malate dehydrogenase {Archaeon Archaeoglobus fulgi 99.96
d1hyha1146 L-2-hydroxyisocapronate dehydrogenase, L-HICDH {La 99.96
d1a5za1140 Lactate dehydrogenase {Thermotoga maritima [TaxId: 99.96
d2ldxa1159 Lactate dehydrogenase {Mouse (Mus musculus) [TaxId 99.95
d1hyea1145 MJ0490, lactate/malate dehydrogenase {Archaeon Met 99.95
d1ez4a1146 Lactate dehydrogenase {Lactobacillus pentosus [Tax 99.95
d2cmda1145 Malate dehydrogenase {Escherichia coli [TaxId: 562 99.95
d1t2da1150 Lactate dehydrogenase {Malaria parasite (Plasmodiu 99.95
d1uxja1142 Malate dehydrogenase {Chloroflexus aurantiacus [Ta 99.95
d1mlda1144 Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 982 99.95
d1guza1142 Malate dehydrogenase {Chlorobium vibrioforme [TaxI 99.94
d1pzga1154 Lactate dehydrogenase {Toxoplasma gondii [TaxId: 5 99.93
d1s6ya1169 6-phospho-beta-glucosidase {Bacillus stearothermop 99.83
d1u8xx1167 Maltose-6'-phosphate glucosidase GlvA {Bacillus su 99.83
d1up7a1162 6-phospho-beta-glucosidase {Thermotoga maritima [T 99.76
d1obba1171 Alpha-glucosidase AglA {Thermotoga maritima [TaxId 99.73
d1vjta1193 Putative alpha-glucosidase TM0752 {Thermotoga mari 98.03
d1s6ya2270 6-phospho-beta-glucosidase {Bacillus stearothermop 87.78
d1up7a2253 6-phospho-beta-glucosidase {Thermotoga maritima [T 87.13
d1u8xx2276 Maltose-6'-phosphate glucosidase GlvA {Bacillus su 84.69
>d7mdha2 d.162.1.1 (A:198-385) Malate dehydrogenase {Sorghum (Sorghum vulgare), chloroplast [TaxId: 4558]} Back     information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: LDH C-terminal domain-like
superfamily: LDH C-terminal domain-like
family: Lactate & malate dehydrogenases, C-terminal domain
domain: Malate dehydrogenase
species: Sorghum (Sorghum vulgare), chloroplast [TaxId: 4558]

Probab=100.00  E-value=4.6e-42  Score=293.97  Aligned_cols=171  Identities=40%  Similarity=0.676  Sum_probs=158.4

Q ss_pred             chhHHHHHHHHHHHHhCCCCCCeeeeEEEeecCCceeeecCCceeecCCCCcchhhhhcccccchhHHHHHHHhhHHHHH
Q 021646          134 TRLDHNRAMGQISERLKVHVSDVKNVIIWGNHSSTQYPDVNHATVTTSKGEKPVREAVADDNWLNTEFITTVQQRGAAII  213 (309)
Q Consensus       134 t~lds~R~~~~la~~l~v~~~~v~~~vV~GehG~s~vp~~S~~~v~~~~~~~pl~~~~~~~~~~~~el~~~v~~~~~~i~  213 (309)
                      |.|||+|||++||+++||+|++|++++||||||++|||+||+++|    +|+|+.+++.++.|..+++.+.+++++++++
T Consensus         1 T~LDs~R~r~~lA~~l~V~~~~V~~~iI~GeHGds~vp~~S~a~v----~g~~l~~~~~~~~~~~~~~~~~v~~~~~~ii   76 (188)
T d7mdha2           1 TRLDENRAKCQLALKAGVFYDKVSNVTIWGNHSTTQVPDFLNAKI----DGRPVKEVIKRTKWLEEEFTITVQKRGGALI   76 (188)
T ss_dssp             CHHHHHHHHHHHHHHTTSCGGGEECCEEEBCSSTTCEEECSSCEE----TTEEGGGTCCCHHHHHHHHHHHHHTHHHHHH
T ss_pred             CccHHHHHHHHHHHHHCcCHHHeeEEEEEEcCCCcEeeeeeccEe----eccchhhcccchhhhHHHHHHHHhhhHHHHH
Confidence            789999999999999999999999988899999999999999999    9999999988888877899999999999999


Q ss_pred             hcCCcChHHHHHHHHHHHHHHHHhCCCCceEEEeeeecCCC-CCCCCceEEEEeEEe-cCCcEEEeCCCCCCHHHHHHHH
Q 021646          214 KARKLSSALSAASSACDHIRDWVLGTPKGTWVSMGVYSDGS-YGIPEGLIYSFPVTC-EKGEWSIVKGLKVDEFSRAKMD  291 (309)
Q Consensus       214 ~~kg~t~~~~~a~a~~~~i~~~i~~~~~~~v~~~sv~~~g~-ygi~~~v~~s~Pv~~-~~Gv~~i~~~~~L~~~E~~~l~  291 (309)
                      +.||+++++++|.|+++++++++.+.++..++|++++++|+ ||+++|+|||+||++ ++|+++++.+++|+++|+++|+
T Consensus        77 ~~kg~s~~~s~A~A~~~~~~ai~~~~~~~~~~s~~v~~~g~~YGi~~~v~~s~Pv~ig~~G~~~iv~~l~L~~~e~~~l~  156 (188)
T d7mdha2          77 QKWGRSSAASTAVSIADAIKSLVTPTPEGDWFSTGVYTTGNPYGIAEDIVFSMPCRSKGDGDYELATDVSNDDFLWERIK  156 (188)
T ss_dssp             HHTSSCCHHHHHHHHHHHHHHHHSCCCTTCCEEEEEECTTCSSCCCSSSEEEEEEECCSSSCCEECCCCCCCHHHHHHHH
T ss_pred             HhhcccchhhHHHHHHHHHHHHHcCCCCCceEEEEEEeCCCccCCCCCeEEEEeeEECCCccEEEeCCCCCCHHHHHHHH
Confidence            99999999999999999998877665567899999999995 999889999999986 9999999867999999999999


Q ss_pred             HHHHHHHHHHHHHhhhh
Q 021646          292 ATAEELAEEKTLAYSCL  308 (309)
Q Consensus       292 ~s~~~i~~~i~~~~~~~  308 (309)
                      +|+++|+++.+.+..+|
T Consensus       157 ~S~~eL~~e~~~v~~Ll  173 (188)
T d7mdha2         157 KSEAELLAEKKCVAHLT  173 (188)
T ss_dssp             HHHHHHHHHHHHTHHHH
T ss_pred             HHHHHHHHHHHHHHHhh
Confidence            99999999988776654
>d5mdha2 d.162.1.1 (A:155-333) Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 9823]} Back     information, alignment and structure
>d1y7ta2 d.162.1.1 (A:154-332) Malate dehydrogenase {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1b8pa2 d.162.1.1 (A:159-329) Malate dehydrogenase {Aquaspirillum arcticum [TaxId: 87645]} Back     information, alignment and structure
>d1hyea2 d.162.1.1 (A:146-313) MJ0490, lactate/malate dehydrogenase {Archaeon Methanococcus jannaschii [TaxId: 2190]} Back     information, alignment and structure
>d1i0za2 d.162.1.1 (A:161-332) Lactate dehydrogenase {Human (Homo sapiens), heart isoform (H chain) [TaxId: 9606]} Back     information, alignment and structure
>d1ojua2 d.162.1.1 (A:164-331) Lactate dehydrogenase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} Back     information, alignment and structure
>d1y6ja2 d.162.1.1 (A:149-317) Lactate dehydrogenase {Clostridium thermocellum [TaxId: 1515]} Back     information, alignment and structure
>d1llda2 d.162.1.1 (A:150-319) Lactate dehydrogenase {Bifidobacterium longum, strain am101-2 [TaxId: 216816]} Back     information, alignment and structure
>d1hyha2 d.162.1.1 (A:167-329) L-2-hydroxyisocapronate dehydrogenase, L-HICDH {Lactobacillus confusus [TaxId: 1583]} Back     information, alignment and structure
>d1ez4a2 d.162.1.1 (A:163-334) Lactate dehydrogenase {Lactobacillus pentosus [TaxId: 1589]} Back     information, alignment and structure
>d1a5za2 d.162.1.1 (A:164-333) Lactate dehydrogenase {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d1uxja2 d.162.1.1 (A:144-307) Malate dehydrogenase {Chloroflexus aurantiacus [TaxId: 1108]} Back     information, alignment and structure
>d1ldma2 d.162.1.1 (A:161-329) Lactate dehydrogenase {Dogfish (Squalus acanthias) [TaxId: 7797]} Back     information, alignment and structure
>d1pzga2 d.162.1.1 (A:164-334) Lactate dehydrogenase {Toxoplasma gondii [TaxId: 5811]} Back     information, alignment and structure
>d1guza2 d.162.1.1 (A:143-305) Malate dehydrogenase {Chlorobium vibrioforme [TaxId: 1098]} Back     information, alignment and structure
>d2ldxa2 d.162.1.1 (A:160-331) Lactate dehydrogenase {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1t2da2 d.162.1.1 (A:151-315) Lactate dehydrogenase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]} Back     information, alignment and structure
>d1ldna2 d.162.1.1 (A:163-330) Lactate dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]} Back     information, alignment and structure
>d1llca2 d.162.1.1 (A:165-334) Lactate dehydrogenase {Lactobacillus casei [TaxId: 1582]} Back     information, alignment and structure
>d1o6za2 d.162.1.1 (A:163-330) Malate dehydrogenase {Archaeon Haloarcula marismortui [TaxId: 2238]} Back     information, alignment and structure
>d7mdha1 c.2.1.5 (A:23-197) Malate dehydrogenase {Sorghum (Sorghum vulgare), chloroplast [TaxId: 4558]} Back     information, alignment and structure
>d1mlda2 d.162.1.1 (A:145-313) Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 9823]} Back     information, alignment and structure
>d1llda1 c.2.1.5 (A:7-149) Lactate dehydrogenase {Bifidobacterium longum, strain am101-2 [TaxId: 216816]} Back     information, alignment and structure
>d5mdha1 c.2.1.5 (A:1-154) Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 9823]} Back     information, alignment and structure
>d1o6za1 c.2.1.5 (A:22-162) Malate dehydrogenase {Archaeon Haloarcula marismortui [TaxId: 2238]} Back     information, alignment and structure
>d2cmda2 d.162.1.1 (A:146-312) Malate dehydrogenase {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1y7ta1 c.2.1.5 (A:0-153) Malate dehydrogenase {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1ldna1 c.2.1.5 (A:15-162) Lactate dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]} Back     information, alignment and structure
>d1y6ja1 c.2.1.5 (A:7-148) Lactate dehydrogenase {Clostridium thermocellum [TaxId: 1515]} Back     information, alignment and structure
>d1i0za1 c.2.1.5 (A:1-160) Lactate dehydrogenase {Human (Homo sapiens), heart isoform (H chain) [TaxId: 9606]} Back     information, alignment and structure
>d1ojua1 c.2.1.5 (A:22-163) Malate dehydrogenase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} Back     information, alignment and structure
>d1hyha1 c.2.1.5 (A:21-166) L-2-hydroxyisocapronate dehydrogenase, L-HICDH {Lactobacillus confusus [TaxId: 1583]} Back     information, alignment and structure
>d1a5za1 c.2.1.5 (A:22-163) Lactate dehydrogenase {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d2ldxa1 c.2.1.5 (A:1-159) Lactate dehydrogenase {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1hyea1 c.2.1.5 (A:1-145) MJ0490, lactate/malate dehydrogenase {Archaeon Methanococcus jannaschii [TaxId: 2190]} Back     information, alignment and structure
>d1ez4a1 c.2.1.5 (A:16-162) Lactate dehydrogenase {Lactobacillus pentosus [TaxId: 1589]} Back     information, alignment and structure
>d2cmda1 c.2.1.5 (A:1-145) Malate dehydrogenase {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1t2da1 c.2.1.5 (A:1-150) Lactate dehydrogenase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]} Back     information, alignment and structure
>d1uxja1 c.2.1.5 (A:2-143) Malate dehydrogenase {Chloroflexus aurantiacus [TaxId: 1108]} Back     information, alignment and structure
>d1mlda1 c.2.1.5 (A:1-144) Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 9823]} Back     information, alignment and structure
>d1guza1 c.2.1.5 (A:1-142) Malate dehydrogenase {Chlorobium vibrioforme [TaxId: 1098]} Back     information, alignment and structure
>d1pzga1 c.2.1.5 (A:14-163) Lactate dehydrogenase {Toxoplasma gondii [TaxId: 5811]} Back     information, alignment and structure
>d1s6ya1 c.2.1.5 (A:4-172) 6-phospho-beta-glucosidase {Bacillus stearothermophilus [TaxId: 1422]} Back     information, alignment and structure
>d1u8xx1 c.2.1.5 (X:3-169) Maltose-6'-phosphate glucosidase GlvA {Bacillus subtilis [TaxId: 1423]} Back     information, alignment and structure
>d1up7a1 c.2.1.5 (A:1-162) 6-phospho-beta-glucosidase {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d1obba1 c.2.1.5 (A:2-172) Alpha-glucosidase AglA {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d1s6ya2 d.162.1.2 (A:173-445) 6-phospho-beta-glucosidase {Bacillus stearothermophilus [TaxId: 1422]} Back     information, alignment and structure
>d1up7a2 d.162.1.2 (A:163-415) 6-phospho-beta-glucosidase {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d1u8xx2 d.162.1.2 (X:170-445) Maltose-6'-phosphate glucosidase GlvA {Bacillus subtilis [TaxId: 1423]} Back     information, alignment and structure