Citrus Sinensis ID: 021668

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------31
MASALMTSSMNTPLHHHSKTPLGKPKVAPNPKASHVPKSSSLDQAENLTIKSNNNNPFPEIQIDEYMTLKAKKINKALFEGAAVPLILQYPTLPNHEGERVHGTLCIASCELVGGNESSVMPLACAAEMLVTLALNRALLCYAVEHMATKTKNVSPDRLVRAIGEISSAVGTRGVLAGRIMEINSKGKDVSLSELDFIKRLRCGKLIEASVVCGVLIGGGSEEDIEKLRKYGKCVGLAYQVWDDILDNMKKKKEAGDDEATYPKLMGVAGAKRYAKELVAEANQELAYFDPTRAAPLYHLADFLVSRHK
cccccccccccccccccccccccccccccccccccccccccHHHHHHHHHccccccccccccHHHHHHHHHHHHHHHHHccccHHHHHHHccccccccccccHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHcccccHHHHHHHHHccccccccHHHHHHHHHHcHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHccHHHHHHHHHHccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHccc
ccccccccccccccccccccccccccccccccccccccccccccEEEEEcccccccccccccHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHccccccccHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHcccccEEEEEEEEccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHccEEEEEHcHHcccccHHHHcccccccHHHccHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHccc
masalmtssmntplhhhsktplgkpkvapnpkashvpksssldqaenltiksnnnnpfpeiqiDEYMTLKAKKINKALfegaavplilqyptlpnhegervhgtlciascelvggnessvmPLACAAEMLVTLALNRALLCYAVEHMatktknvspdRLVRAIGEISSAVGTRGVLAGRIMEinskgkdvslseldFIKRLRCGKLIEASVVCGVligggseeDIEKLRKYGKCVGLAYQVWDDILDNMKKkkeagddeatypklmgVAGAKRYAKELVAEANQelayfdptraaplyhLADFLVSRHK
MASALmtssmntplhhhsktplgkPKVAPNPKAShvpksssldqaenltiksnnnnpfpEIQIDEYMTLKAKKINKALFEGAAVPLILQYPTLPNHEGERVHGTLCIASCELVGGNESSVMPLACAAEMLVTLALNRALLCYAVEHMatktknvspdrLVRAIGeissavgtrgvlagRIMEinskgkdvslseLDFIKRLRCGKLIEASVVCGVLIGGGSEEDIEKLRKYGKCVGLAYQVWDDILDNMKKKkeagddeatypklMGVAGAKRYAKELVAEANQELAYFDPTRAAPLYHLADFLVSRHK
MASALMTSSMNTPLHHHSKTPLGKPKVAPNPKASHVPKSSSLDQAENLTIKSNNNNPFPEIQIDEYMTLKAKKINKALFEGAAVPLILQYPTLPNHEGERVHGTLCIASCELVGGNESSVMPLACAAEMLVTLALNRALLCYAVEHMATKTKNVSPDRLVRAIGEISSAVGTRGVLAGRIMEINSKGKDVSLSELDFIKRLRCGKLIEASVVCGVLIGGGSEEDIEKLRKYGKCVGLAYQVWDDILDNMKKKKEAGDDEATYPKLMGVAGAKRYAKELVAEANQELAYFDPTRAAPLYHLADFLVSRHK
***********************************************************EIQIDEYMTLKAKKINKALFEGAAVPLILQYPTLPNHEGERVHGTLCIASCELVGGNESSVMPLACAAEMLVTLALNRALLCYAVEHMATKTKNVSPDRLVRAIGEISSAVGTRGVLAGRIMEINSKGKDVSLSELDFIKRLRCGKLIEASVVCGVLI***********RKYGKCVGLAYQVWDDILDN*************YPKLMGVAGAKRYAKELVAEANQELAYFDPTRAAPLYHLADFLV****
*************************************************************QIDEYMTLKAKKINKALFEGAAVPLILQYPTLPNHEGERVHGTLCIASCELVGGNESSVMPLACAAEMLVTLALNRALLCYAVEHMATKTKNVSPDRLVRAIGEISSAVGTRGVLAGRIMEINSKGKDVSLSELDFIKRLRCGKLIEASVVCGVLIGGGSEEDIEKLRKYGKCVGLAYQVWDDILDNMKKKKEAGDDEATYPKLMGVAGAKRYAKELVAEANQELAYFDPTRAAPLYHLADFLVSRH*
*****************************************LDQAENLTIKSNNNNPFPEIQIDEYMTLKAKKINKALFEGAAVPLILQYPTLPNHEGERVHGTLCIASCELVGGNESSVMPLACAAEMLVTLALNRALLCYAVEHMATKTKNVSPDRLVRAIGEISSAVGTRGVLAGRIMEINSKGKDVSLSELDFIKRLRCGKLIEASVVCGVLIGGGSEEDIEKLRKYGKCVGLAYQVWDDILDNMKKKKEAGDDEATYPKLMGVAGAKRYAKELVAEANQELAYFDPTRAAPLYHLADFLVSRHK
**************************************SSSLDQAENLTIKSNNNNPFPEIQIDEYMTLKAKKINKALFEGAAVPLILQYPTLPNHEGERVHGTLCIASCELVGGNESSVMPLACAAEMLVTLALNRALLCYAVEHMATKTKNVSPDRLVRAIGEISSAVGTRGVLAGRIMEINSKGKDVSLSELDFIKRLRCGKLIEASVVCGVLIGGGSEEDIEKLRKYGKCVGLAYQVWDDILDNMKKKKEAGDDEATYPKLMGVAGAKRYAKELVAEANQELAYFDPTRAAPLYHLADFLVSR**
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MASALMTSSMNTPLHHHSKTPLGKPKVAPNPKASHVPKSSSLDQAENLTIKSNNNNPFPEIQIDEYMTLKAKKINKALFEGAAVPLILQYPTLPNHEGERVHGTLCIASCELVGGNESSVMPLACAAEMLVTLALNRALLCYAVEHMATKTKNVSPDRLVRAIGEISSAVGTRGVLAGRIMEINSKGKDVSLSELDFIKRLRCGKLIEASVVCGVLIGGGSEEDIEKLRKYGKCVGLAYQVWDDILDNMKKKKEAGDDEATYPKLMGVAGAKRYAKELVAEANQELAYFDPTRAAPLYHLADFLVSRHK
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query309 2.2.26 [Sep-21-2011]
Q94ID7370 Geranylgeranyl pyrophosph N/A no 0.857 0.716 0.393 5e-57
Q43133366 Geranylgeranyl pyrophosph N/A no 0.983 0.830 0.373 4e-52
P34802371 Heterodimeric geranylgera yes no 0.773 0.644 0.398 4e-51
Q42698357 Geranylgeranyl pyrophosph N/A no 0.776 0.672 0.397 9e-51
Q9ZU77347 Geranylgeranyl pyrophosph no no 0.770 0.685 0.387 4e-49
O04046376 Heterodimeric geranylgera no no 0.818 0.672 0.391 3e-48
P80042369 Geranylgeranyl pyrophosph N/A no 0.912 0.764 0.361 1e-47
Q9SLG2372 Geranylgeranyl pyrophosph no no 0.766 0.637 0.363 8e-43
Q9LUE1360 Geranylgeranyl pyrophosph no no 0.815 0.7 0.374 3e-42
Q9LRR0361 Putative geranylgeranyl p no no 0.818 0.700 0.361 2e-41
>sp|Q94ID7|GGPPS_HEVBR Geranylgeranyl pyrophosphate synthase, chloroplastic OS=Hevea brasiliensis GN=GGPS PE=1 SV=1 Back     alignment and function desciption
 Score =  221 bits (563), Expect = 5e-57,   Method: Compositional matrix adjust.
 Identities = 125/318 (39%), Positives = 184/318 (57%), Gaps = 53/318 (16%)

Query: 40  SSLDQAENLTIKSNNNNPFPEIQIDEYMTLKAKKINKALFEGAAVPL--------ILQYP 91
           S++   E  T++   NNP P      YM  K   IN+AL   AA+PL         ++Y 
Sbjct: 56  SAIITKEEETLQEEQNNPPPSFDFKSYMLQKGNSINQAL--EAAIPLQEPAKIHESMRYS 113

Query: 92  TLPNHEGERVHGTLCIASCELVGGNESSVMPLACAAEMLVTLAL---------------- 135
            L    G+RV   LC+A+CELVGGN+S  MP ACA EM+ T++L                
Sbjct: 114 LLAG--GKRVRPALCLAACELVGGNDSMAMPAACAVEMIHTMSLIHDDLPCMDNDDLRRG 171

Query: 136 ----------------NRALLCYAVEHMATKTKNVSPDRLVRAIGEISSAVGTRGVLAGR 179
                             ALL +A EH+A  T NVS  R+VRA+GE++ A+G  G++AG+
Sbjct: 172 KPTNHIVFGEDVAVLAGDALLAFAFEHIAVSTLNVSSARIVRAVGELAKAIGAEGLVAGQ 231

Query: 180 IMEINSKGK-DVSLSELDFIKRLRCGKLIEASVVCGVLIGGGSEEDIEKLRKYGKCVGLA 238
           +++INS+G  +V L +L+FI   +  KL+E +VV G ++GGG++E++EKLRKY + +GL 
Sbjct: 232 VVDINSEGSSEVDLEKLEFIHIHKTAKLLEGAVVLGAILGGGTDEEVEKLRKYARDIGLL 291

Query: 239 YQVWDDILDNMKKKKEAGD--------DEATYPKLMGVAGAKRYAKELVAEANQELAYFD 290
           +QV DDILD  K  +E G         D+ TYPKL+G+  ++ +A++L  EA ++LA FD
Sbjct: 292 FQVVDDILDVTKSSQELGKTAGKDLVADKVTYPKLLGIEKSREFAEKLNKEAQEQLAGFD 351

Query: 291 PTRAAPLYHLADFLVSRH 308
           P +AAPL  LA+++  R 
Sbjct: 352 PEKAAPLIALANYIAHRQ 369
Catalyzes the trans-addition of the three molecules of IPP onto DMAPP to form geranylgeranyl pyrophosphate.
Hevea brasiliensis (taxid: 3981)
EC: 2EC: .EC: 5EC: .EC: 1EC: .EC: 1EC: 0
>sp|Q43133|GGPPS_SINAL Geranylgeranyl pyrophosphate synthase, chloroplastic/chromoplastic OS=Sinapis alba GN=GGPS1 PE=1 SV=1 Back     alignment and function description
>sp|P34802|GGPP1_ARATH Heterodimeric geranylgeranyl pyrophosphate synthase large subunit 1, chloroplastic OS=Arabidopsis thaliana GN=GGPPS1 PE=1 SV=2 Back     alignment and function description
>sp|Q42698|GGPPS_CATRO Geranylgeranyl pyrophosphate synthase, chloroplastic OS=Catharanthus roseus GN=GGPS1 PE=3 SV=1 Back     alignment and function description
>sp|Q9ZU77|GGPP7_ARATH Geranylgeranyl pyrophosphate synthase 7, chloroplastic OS=Arabidopsis thaliana GN=At2g18620 PE=2 SV=1 Back     alignment and function description
>sp|O04046|GGPP2_ARATH Heterodimeric geranylgeranyl pyrophosphate synthase large subunit 2 OS=Arabidopsis thaliana GN=GGPPS2 PE=1 SV=2 Back     alignment and function description
>sp|P80042|GGPPS_CAPAN Geranylgeranyl pyrophosphate synthase, chloroplastic OS=Capsicum annuum GN=GGPS1 PE=3 SV=1 Back     alignment and function description
>sp|Q9SLG2|GGPP4_ARATH Geranylgeranyl pyrophosphate synthase 4 OS=Arabidopsis thaliana GN=GGPP4 PE=2 SV=1 Back     alignment and function description
>sp|Q9LUE1|GGPP9_ARATH Geranylgeranyl pyrophosphate synthase 9, chloroplastic OS=Arabidopsis thaliana GN=GGPPS9 PE=1 SV=1 Back     alignment and function description
>sp|Q9LRR0|GGPP8_ARATH Putative geranylgeranyl pyrophosphate synthase 8, chloroplastic OS=Arabidopsis thaliana GN=At3g14510 PE=5 SV=2 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query309
255580739372 geranyl geranyl pyrophosphate synthase, 0.977 0.811 0.413 2e-67
224077270365 predicted protein [Populus trichocarpa] 0.974 0.824 0.422 2e-65
325516280365 geranylgeranyl pyrophosphate synthase 1 0.799 0.676 0.444 5e-64
350538439365 geranylgeranyl pyrophosphate synthase 1 0.799 0.676 0.444 4e-63
290575616365 geranylgeranyl diphosphate synthase [Nic 0.799 0.676 0.434 5e-62
79154639367 putative geranylgeranyl pyrophosphate sy 0.867 0.730 0.445 2e-61
291170333370 geranylgeranyl diphosphate synthase [Jat 0.870 0.727 0.422 3e-61
224069436314 predicted protein [Populus trichocarpa] 0.822 0.808 0.438 2e-60
4958920367 GGPP synthase [Daucus carota] 0.867 0.730 0.438 6e-60
374639387346 geranylgeranyl diphosphate synthase 2 [S 0.886 0.791 0.409 6e-56
>gi|255580739|ref|XP_002531191.1| geranyl geranyl pyrophosphate synthase, putative [Ricinus communis] gi|223529232|gb|EEF31206.1| geranyl geranyl pyrophosphate synthase, putative [Ricinus communis] Back     alignment and taxonomy information
 Score =  262 bits (669), Expect = 2e-67,   Method: Compositional matrix adjust.
 Identities = 150/363 (41%), Positives = 209/363 (57%), Gaps = 61/363 (16%)

Query: 3   SALMTSSMNTPLHHHSKTPLGKPKVAPNPKASHVPKSSSLDQAENLTIKSNNNNP----- 57
           S L+  S    L +HSK PL   K     K      ++ +    N +  +    P     
Sbjct: 13  SLLLKKSSFNGLKNHSKVPLANLKFLVPAKTKLTATATRVMVVSNSSAAAAAQEPIKIIA 72

Query: 58  ----FPEIQIDEYMTLKAKKINKALFEGAAVPL--------ILQYPTLPNHEGERVHGTL 105
                P    +EYM  KAK +NKAL E  A+PL         ++Y  L    G+RV   L
Sbjct: 73  PKIPLPAFPFEEYMATKAKHVNKALDE--AIPLQNPVKIHDAMRYSLLAG--GKRVRPVL 128

Query: 106 CIASCELVGGNESSVMPLACAAEMLVTLAL------------------------------ 135
           CIA+CELVGG+E++ MP ACA EM+ T++L                              
Sbjct: 129 CIAACELVGGDEATAMPAACAMEMIHTMSLIHDDLPCMDNDDLRRGKPTNHKMFGEETAI 188

Query: 136 --NRALLCYAVEHMATKTKNVSPDRLVRAIGEISSAVGTRGVLAGRIMEINSKGKDVSLS 193
               ALL ++ EH+A  TKNVSPDR+VRAI E+ SAVG+ G++AG+I++I+S+GKDVS+S
Sbjct: 189 LAGDALLSFSFEHVARSTKNVSPDRVVRAIAELGSAVGSEGLVAGQIVDIDSEGKDVSVS 248

Query: 194 ELDFIKRLRCGKLIEASVVCGVLIGGGSEEDIEKLRKYGKCVGLAYQVWDDILDNMKKKK 253
           +L++I   +  KL+EASVVCG ++GG  +E +E++RKY +C+GL +QV DDILD  K  +
Sbjct: 249 DLEYIHIHKTAKLLEASVVCGAILGGADDESVERVRKYARCIGLLFQVVDDILDVTKSSE 308

Query: 254 EAGD--------DEATYPKLMGVAGAKRYAKELVAEANQELAYFDPTRAAPLYHLADFLV 305
           E G         D+ATYPKLMG+  A++ A +LV +ANQELAYFD  +AAPLYH A+++ 
Sbjct: 309 ELGKTAGKDLITDKATYPKLMGIDEARKLAAKLVDQANQELAYFDSAKAAPLYHFANYIA 368

Query: 306 SRH 308
           SR 
Sbjct: 369 SRQ 371

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|224077270|ref|XP_002305196.1| predicted protein [Populus trichocarpa] gi|222848160|gb|EEE85707.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|325516280|gb|ADZ24718.1| geranylgeranyl pyrophosphate synthase 1 [Solanum pennellii] Back     alignment and taxonomy information
>gi|350538439|ref|NP_001234087.1| geranylgeranyl pyrophosphate synthase 1 [Solanum lycopersicum] gi|82547880|gb|ABB82554.1| geranylgeranyl pyrophosphate synthase 1 [Solanum lycopersicum] Back     alignment and taxonomy information
>gi|290575616|gb|ADD49735.1| geranylgeranyl diphosphate synthase [Nicotiana tabacum] Back     alignment and taxonomy information
>gi|79154639|gb|ABB52066.1| putative geranylgeranyl pyrophosphate synthase [Daucus carota subsp. sativus] Back     alignment and taxonomy information
>gi|291170333|gb|ADD82422.1| geranylgeranyl diphosphate synthase [Jatropha curcas] Back     alignment and taxonomy information
>gi|224069436|ref|XP_002302977.1| predicted protein [Populus trichocarpa] gi|222844703|gb|EEE82250.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|4958920|dbj|BAA78047.1| GGPP synthase [Daucus carota] Back     alignment and taxonomy information
>gi|374639387|gb|AEZ55682.1| geranylgeranyl diphosphate synthase 2 [Salvia miltiorrhiza] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query309
UNIPROTKB|P80042369 GGPS1 "Geranylgeranyl pyrophos 0.572 0.479 0.419 5.3e-49
TAIR|locus:2048993376 GGPS2 "geranylgeranyl pyrophos 0.572 0.470 0.415 8.7e-49
TAIR|locus:2046258372 GGPS4 "geranylgeranyl pyrophos 0.569 0.473 0.391 5.9e-44
TAIR|locus:2087550344 AT3G20160 [Arabidopsis thalian 0.572 0.514 0.393 1.8e-42
TAIR|locus:2010182336 GGPS6 "geranylgeranyl pyrophos 0.563 0.517 0.407 2.2e-42
TAIR|locus:2115450371 GGPS1 "geranylgeranyl pyrophos 0.718 0.598 0.384 1e-36
TAIR|locus:2046283347 AT2G18620 [Arabidopsis thalian 0.715 0.636 0.379 2.7e-36
TAIR|locus:2089626360 AT3G14530 "AT3G14530" [Arabido 0.676 0.580 0.389 4e-35
TAIR|locus:2093832357 AT3G29430 [Arabidopsis thalian 0.676 0.585 0.389 8.3e-35
TAIR|locus:2079028360 AT3G32040 [Arabidopsis thalian 0.676 0.580 0.376 2.2e-34
UNIPROTKB|P80042 GGPS1 "Geranylgeranyl pyrophosphate synthase, chloroplastic" [Capsicum annuum (taxid:4072)] Back     alignment and assigned GO terms
 Score = 379 (138.5 bits), Expect = 5.3e-49, Sum P(2) = 5.3e-49
 Identities = 78/186 (41%), Positives = 117/186 (62%)

Query:   131 VTLALNRALLCYAVEHMATKTKNVSPDRLVRAIGEISSAVGTRGVLAGRIMEINSKGK-D 189
             V +    +LL +A EH+   T  V+P R+V A+ E++ ++GT G++AG++ +I   G   
Sbjct:   182 VAVLAGDSLLAFAFEHIVNSTAGVTPSRIVGAVAELAKSIGTEGLVAGQVADIKCTGNAS 241

Query:   190 VSLSELDFIKRLRCGKLIEASVVCGVLIGGGSEEDIEKLRKYGKCVGLAYQVWDDILDNM 249
             VSL  L+FI   +   L+E+SVV G ++GGG+  ++EKLR++ +C+GL +QV DDILD  
Sbjct:   242 VSLETLEFIHVHKTAALLESSVVLGAILGGGTNVEVEKLRRFARCIGLLFQVVDDILDVT 301

Query:   250 KKKKEAGD--------DEATYPKLMGVAGAKRYAKELVAEANQELAYFDPTRAAPLYHLA 301
             K  +E G         D+ TYPKL+G+  AK +A EL  EA Q+L  FD  +AAPL  LA
Sbjct:   302 KSSEELGKTAGKDLVVDKTTYPKLLGLEKAKEFAAELNREAKQQLEGFDSRKAAPLIALA 361

Query:   302 DFLVSR 307
             D++  R
Sbjct:   362 DYIAYR 367
GO:0004161 "dimethylallyltranstransferase activity" evidence=IDA
GO:0004311 "farnesyltranstransferase activity" evidence=IDA
GO:0004337 "geranyltranstransferase activity" evidence=IDA
GO:0006720 "isoprenoid metabolic process" evidence=IDA
GO:0009536 "plastid" evidence=IDA
TAIR|locus:2048993 GGPS2 "geranylgeranyl pyrophosphate synthase 2" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2046258 GGPS4 "geranylgeranyl pyrophosphate synthase 4" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2087550 AT3G20160 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2010182 GGPS6 "geranylgeranyl pyrophosphate synthase 6" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2115450 GGPS1 "geranylgeranyl pyrophosphate synthase 1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2046283 AT2G18620 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2089626 AT3G14530 "AT3G14530" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2093832 AT3G29430 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2079028 AT3G32040 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
4th Layer2.5.1.100.824
4th Layer2.5.1.10.824
3rd Layer2.5.10.766

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
gw1.II.860.1
hypothetical protein (306 aa)
(Populus trichocarpa)
Predicted Functional Partners:
IDI
SubName- Full=Putative chloroplast isopentenyl diphosphate isomerase; EC=5.3.3.2; Flags- Fragme [...] (234 aa)
•    •• 0.908
fgenesh4_pm.C_LG_IX000553
hypothetical protein (234 aa)
     •• 0.906
eugene3.00012780
annotation not avaliable (326 aa)
  •  • •0.906
gw1.I.925.1
hypothetical protein (242 aa)
     •• 0.906
estExt_fgenesh4_pg.C_280076
dimethylallyltranstransferase (321 aa)
  •  •••0.906
eugene3.00101320
dimethylallyltranstransferase (383 aa)
  •  •••0.905
grail3.0045022601
hypothetical protein (259 aa)
  •  • •0.904
gw1.XV.832.1
hypothetical protein (236 aa)
  •  • •0.904
grail3.0001025501
hypothetical protein (314 aa)
  •  • •0.903
gw1.VII.3333.1
annotation not avaliable (311 aa)
  •  •••0.902

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query309
pfam00348260 pfam00348, polyprenyl_synt, Polyprenyl synthetase 5e-32
COG0142322 COG0142, IspA, Geranylgeranyl pyrophosphate syntha 3e-28
cd00685259 cd00685, Trans_IPPS_HT, Trans-Isoprenyl Diphosphat 7e-28
PRK10581299 PRK10581, PRK10581, geranyltranstransferase; Provi 9e-22
cd00867236 cd00867, Trans_IPPS, Trans-Isoprenyl Diphosphate S 6e-19
CHL00151323 CHL00151, preA, prenyl transferase; Reviewed 4e-14
cd00385243 cd00385, Isoprenoid_Biosyn_C1, Isoprenoid Biosynth 2e-10
TIGR02748319 TIGR02748, GerC3_HepT, heptaprenyl diphosphate syn 3e-06
PRK10888323 PRK10888, PRK10888, octaprenyl diphosphate synthas 0.002
PLN02857416 PLN02857, PLN02857, octaprenyl-diphosphate synthas 0.003
>gnl|CDD|215873 pfam00348, polyprenyl_synt, Polyprenyl synthetase Back     alignment and domain information 
 Score =  119 bits (300), Expect = 5e-32
 Identities = 60/223 (26%), Positives = 105/223 (47%), Gaps = 40/223 (17%)

Query: 98  GERVHGTLCIASCELVGGNESSVMPLACAAEML--------------------------- 130
           G+R+   L + +   +G    +++ LACA EM+                           
Sbjct: 13  GKRIRPLLVVLAARALGVEPETLLYLACAIEMIHTASLVHDDLMDNSDLRRGKPTCHKKF 72

Query: 131 ---VTLALNRALLCYAVEHMATKTKNVSPDRLVRAIGEISSAVGTRGVLAGRIMEINSKG 187
                +    ALL  A + +     +V P+     I E+++AVG +G   G++M++ ++G
Sbjct: 73  GEAGAILAGDALLSRAFQLL-ALLGHVRPEPKYILISELANAVGAQG-EVGQLMDLETEG 130

Query: 188 KDVSLSELDFIKRLRCGKLIEASVVCGVLIGGGSEEDIEKLRKYGKCVGLAYQVWDDILD 247
           KD++L E   I   +   L  ASV  G ++ G  EED + L  +G+ +GLA+Q+ DDILD
Sbjct: 131 KDITLEEYLRIVSYKTAALFYASVQLGAIVAGADEEDEKDLYDFGRDLGLAFQIQDDILD 190

Query: 248 NMKKKKEAG--------DDEATYPKLMGVAGAKRYAKELVAEA 282
                +E G        + ++T P L+ + GA+   ++L+ EA
Sbjct: 191 LTGDTEELGKPVGTDLQEGKSTLPVLLALEGAREEQRKLLREA 233

Length = 260
>gnl|CDD|223220 COG0142, IspA, Geranylgeranyl pyrophosphate synthase [Coenzyme metabolism] Back     alignment and domain information
>gnl|CDD|173833 cd00685, Trans_IPPS_HT, Trans-Isoprenyl Diphosphate Synthases, head-to-tail Back     alignment and domain information
>gnl|CDD|182567 PRK10581, PRK10581, geranyltranstransferase; Provisional Back     alignment and domain information
>gnl|CDD|173836 cd00867, Trans_IPPS, Trans-Isoprenyl Diphosphate Synthases Back     alignment and domain information
>gnl|CDD|164542 CHL00151, preA, prenyl transferase; Reviewed Back     alignment and domain information
>gnl|CDD|173830 cd00385, Isoprenoid_Biosyn_C1, Isoprenoid Biosynthesis enzymes, Class 1 Back     alignment and domain information
>gnl|CDD|131795 TIGR02748, GerC3_HepT, heptaprenyl diphosphate synthase component II Back     alignment and domain information
>gnl|CDD|182813 PRK10888, PRK10888, octaprenyl diphosphate synthase; Provisional Back     alignment and domain information
>gnl|CDD|215462 PLN02857, PLN02857, octaprenyl-diphosphate synthase Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 309
PRK10581299 geranyltranstransferase; Provisional 100.0
COG0142322 IspA Geranylgeranyl pyrophosphate synthase [Coenzy 100.0
PLN02890422 geranyl diphosphate synthase 100.0
TIGR02748319 GerC3_HepT heptaprenyl diphosphate synthase compon 100.0
PRK10888323 octaprenyl diphosphate synthase; Provisional 100.0
PLN02857416 octaprenyl-diphosphate synthase 100.0
TIGR02749322 prenyl_cyano solanesyl diphosphate synthase. Membe 100.0
CHL00151323 preA prenyl transferase; Reviewed 100.0
KOG0776384 consensus Geranylgeranyl pyrophosphate synthase/Po 100.0
cd00685259 Trans_IPPS_HT Trans-Isoprenyl Diphosphate Synthase 100.0
PF00348260 polyprenyl_synt: Polyprenyl synthetase; InterPro: 100.0
cd00867236 Trans_IPPS Trans-Isoprenyl Diphosphate Synthases. 99.97
KOG0777322 consensus Geranylgeranyl pyrophosphate synthase/Po 99.87
KOG0711347 consensus Polyprenyl synthetase [Coenzyme transpor 99.73
cd00385243 Isoprenoid_Biosyn_C1 Isoprenoid Biosynthesis enzym 99.6
PLN02632334 phytoene synthase 94.87
cd00683265 Trans_IPPS_HH Trans-Isoprenyl Diphosphate Synthase 94.58
TIGR03465266 HpnD squalene synthase HpnD. The genes of this fam 94.32
TIGR03464266 HpnC squalene synthase HpnC. This family of genes 93.87
TIGR01559336 squal_synth farnesyl-diphosphate farnesyltransfera 93.1
PF00494267 SQS_PSY: Squalene/phytoene synthase; InterPro: IPR 93.03
PF07307212 HEPPP_synt_1: Heptaprenyl diphosphate synthase (HE 86.23
cd00687303 Terpene_cyclase_nonplant_C1 Non-plant Terpene Cycl 80.26
>PRK10581 geranyltranstransferase; Provisional Back     alignment and domain information 
Probab=100.00  E-value=8.8e-49  Score=369.69  Aligned_cols=244  Identities=29%  Similarity=0.479  Sum_probs=216.1

Q ss_pred             hHHHHHHHHHHHHHHHHhccCCcc------c----ccccccCCCCCCcchHHHHHHHHHHHhCCCchhhhhHHHHHHHHH
Q 021668           62 QIDEYMTLKAKKINKALFEGAAVP------L----ILQYPTLPNHEGERVHGTLCIASCELVGGNESSVMPLACAAEMLV  131 (309)
Q Consensus        62 ~~~~~l~~~~~~i~~~l~~~~~~~------~----~~~y~l~~~~gGKrlRP~L~ll~~~~~g~~~~~~~~~AaaiEliH  131 (309)
                      ++..+++.....|++.|.+  .++      .    .++|.+..  ||||+||.|++++++++|++++.++++|++|||||
T Consensus         2 ~~~~~~~~~~~~i~~~l~~--~~~~~~~~~~~l~~~~~~~~~~--gGKrlRp~L~l~~~~~~g~~~~~~~~~A~avEliH   77 (299)
T PRK10581          2 DFPQQLQACVQQANQALSR--FIAPLPFQNTPVVEAMQYGALL--GGKRLRPFLVYATGQMFGVSTNTLDAPAAAVECIH   77 (299)
T ss_pred             CHHHHHHHHHHHHHHHHHH--HhhhcccCchHHHHHHHHHHhc--CcccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHH
Confidence            4667777788888888877  442      1    18898888  99999999999999999999888999999999999


Q ss_pred             HhhH--------------------------------HHHHHHHHHHHHHhcc-CCCChHHHHHHHHHHHHHhccccchhh
Q 021668          132 TLAL--------------------------------NRALLCYAVEHMATKT-KNVSPDRLVRAIGEISSAVGTRGVLAG  178 (309)
Q Consensus       132 ~aSL--------------------------------GD~Ll~~Af~~l~~~~-~~~~~~~~~~~~~~la~~~G~~~~~~G  178 (309)
                      +|||                                ||+|++.||+++++.. ....+...++++.+++++.|..+||.|
T Consensus        78 ~aSLiHDDip~~D~s~~RRG~pt~h~~~G~~~AIl~GD~L~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~G  157 (299)
T PRK10581         78 AYSLIHDDLPAMDDDDLRRGLPTCHVKFGEANAILAGDALQTLAFSILSDAPMPEVSDRDRISMISELASASGIAGMCGG  157 (299)
T ss_pred             HHHHHHcCcccccCCCccCCCcChHHHhCcchHHHHHHHHHHHHHHHHHhCCCccCChHHHHHHHHHHHHhcccchhhHh
Confidence            9999                                9999999999998753 122344567888888888777899999


Q ss_pred             hHHHhhhCCCCCCHHHHHHHHHhchHHHHHHHHHHHHHhcCCCH-HHHHHHHHHHHHHHHHHHHHhchhhhcccchhcC-
Q 021668          179 RIMEINSKGKDVSLSELDFIKRLRCGKLIEASVVCGVLIGGGSE-EDIEKLRKYGKCVGLAYQVWDDILDNMKKKKEAG-  256 (309)
Q Consensus       179 Q~~Dl~~~~~~~s~~~~~~i~~~KTg~Lf~~a~~~Gailag~~~-~~~~~l~~~G~~lGlAFQI~DDiLD~~~~~~~~G-  256 (309)
                      |.+|+.+....++.++|.+|+.+|||+||++||++|++++|+++ +.++.+++||+++|+||||+|||+|++++++.+| 
T Consensus       158 Q~ld~~~~~~~~~~~~y~~i~~~KTa~L~~~~~~~gailag~~~~~~~~~l~~~g~~lG~aFQI~DDilD~~g~~~~~GK  237 (299)
T PRK10581        158 QALDLEAEGKQVPLDALERIHRHKTGALIRAAVRLGALSAGDKGRRALPVLDRYAESIGLAFQVQDDILDVVGDTATLGK  237 (299)
T ss_pred             hHHHHhccCCCCCHHHHHHHHHHhhHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHccccCChHHHCC
Confidence            99999987667889999999999999999999999999999864 5789999999999999999999999999998887 


Q ss_pred             -------CCCchhhhhhhHHHHHHHHHHHHHHHHHHhccCCC-C-CHHHHHHHHHHHHhccC
Q 021668          257 -------DDEATYPKLMGVAGAKRYAKELVAEANQELAYFDP-T-RAAPLYHLADFLVSRHK  309 (309)
Q Consensus       257 -------~gK~T~p~l~gle~A~~~a~~~~~~A~~~L~~l~~-~-~~~~L~~l~~~l~~R~~  309 (309)
                             +||.|+|+++++++|++.+++|.++|++.|+.++. + .++.|.+|++|+.+|.+
T Consensus       238 ~~g~Dl~~gk~T~p~l~~~e~a~~~a~~~~~~A~~~l~~l~~~~~~~~~L~~l~~~~~~R~~  299 (299)
T PRK10581        238 RQGADQQLGKSTYPALLGLEQARKKARDLIDDARQSLDQLAAQSLDTSALEALANYIIQRDK  299 (299)
T ss_pred             CcchhhhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhCcCCchhHHHHHHHHHHHHhccC
Confidence                   79999999999999999999999999999999953 3 36889999999999975

>COG0142 IspA Geranylgeranyl pyrophosphate synthase [Coenzyme metabolism] Back     alignment and domain information
>PLN02890 geranyl diphosphate synthase Back     alignment and domain information
>TIGR02748 GerC3_HepT heptaprenyl diphosphate synthase component II Back     alignment and domain information
>PRK10888 octaprenyl diphosphate synthase; Provisional Back     alignment and domain information
>PLN02857 octaprenyl-diphosphate synthase Back     alignment and domain information
>TIGR02749 prenyl_cyano solanesyl diphosphate synthase Back     alignment and domain information
>CHL00151 preA prenyl transferase; Reviewed Back     alignment and domain information
>KOG0776 consensus Geranylgeranyl pyrophosphate synthase/Polyprenyl synthetase [Coenzyme transport and metabolism] Back     alignment and domain information
>cd00685 Trans_IPPS_HT Trans-Isoprenyl Diphosphate Synthases, head-to-tail Back     alignment and domain information
>PF00348 polyprenyl_synt: Polyprenyl synthetase; InterPro: IPR000092 A variety of isoprenoid compounds are synthesized by various organisms Back     alignment and domain information
>cd00867 Trans_IPPS Trans-Isoprenyl Diphosphate Synthases Back     alignment and domain information
>KOG0777 consensus Geranylgeranyl pyrophosphate synthase/Polyprenyl synthetase [Coenzyme transport and metabolism] Back     alignment and domain information
>KOG0711 consensus Polyprenyl synthetase [Coenzyme transport and metabolism] Back     alignment and domain information
>cd00385 Isoprenoid_Biosyn_C1 Isoprenoid Biosynthesis enzymes, Class 1 Back     alignment and domain information
>PLN02632 phytoene synthase Back     alignment and domain information
>cd00683 Trans_IPPS_HH Trans-Isoprenyl Diphosphate Synthases, head-to-head Back     alignment and domain information
>TIGR03465 HpnD squalene synthase HpnD Back     alignment and domain information
>TIGR03464 HpnC squalene synthase HpnC Back     alignment and domain information
>TIGR01559 squal_synth farnesyl-diphosphate farnesyltransferase Back     alignment and domain information
>PF00494 SQS_PSY: Squalene/phytoene synthase; InterPro: IPR002060 Squalene synthase 2 Back     alignment and domain information
>PF07307 HEPPP_synt_1: Heptaprenyl diphosphate synthase (HEPPP synthase) subunit 1; InterPro: IPR009920 This family contains subunit 1 of bacterial heptaprenyl diphosphate synthase (HEPPP synthase) (2 Back     alignment and domain information
>cd00687 Terpene_cyclase_nonplant_C1 Non-plant Terpene Cyclases, Class 1 Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query309
3kra_A295 Mint Heterotetrameric Geranyl Pyrophosphate Synthas 3e-52
2j1o_A268 Geranylgeranyl Diphosphate Synthase From Sinapis Al 2e-50
2j1p_A293 Geranylgeranyl Diphosphate Synthase From Sinapis Al 1e-47
4f62_A317 Crystal Structure Of A Putative Farnesyl-Diphosphat 4e-20
1rqi_A300 Active Conformation Of Farnesyl Pyrophosphate Synth 8e-18
2for_A323 Crystal Structure Of The Shigella Flexneri Farnesyl 8e-18
1rqj_A299 Active Conformation Of Farnesyl Pyrophosphate Synth 8e-18
3p41_A303 Crystal Structure Of Polyprenyl Synthetase From Pse 2e-17
3lji_A304 Crystal Structure Of Putative Geranyltranstransfera 3e-17
3ts7_A324 Crystal Structure Of Farnesyl Diphosphate Synthase 1e-15
3uca_A324 Crystal Structure Of Isoprenoid Synthase (Target Ef 1e-13
3p8l_A302 Crystal Structure Of Polyprenyl Synthase From Enter 2e-13
3oab_B264 Mint Deletion Mutant Of Heterotetrameric Geranyl Py 7e-12
3q1o_A310 Crystal Structure Of Geranyltransferase From Helico 8e-12
3llw_A311 Crystal Structure Of Geranyltransferase From Helico 8e-12
3m9u_A309 Crystal Structure Of Geranylgeranyl Pyrophosphate S 2e-11
3p8r_A302 Crystal Structure Of Polyprenyl Synthase From Vibri 6e-11
3kra_B274 Mint Heterotetrameric Geranyl Pyrophosphate Synthas 7e-11
3qkc_B273 Crystal Structure Of Geranyl Diphosphate Synthase S 1e-10
1rtr_A301 Crystal Structure Of S. Aureus Farnesyl Pyrophospha 3e-09
1wy0_A342 Crystal Structure Of Geranylgeranyl Pyrophosphate S 4e-09
3npk_A291 The Crystal Structure Of Geranyltranstransferase Fr 1e-08
3lvs_A298 Crystal Structure Of Farnesyl Diphosphate Synthase 1e-07
2h8o_A335 The 1.6a Crystal Structure Of The Geranyltransferas 1e-07
3m0g_A297 Crystal Structure Of Putative Farnesyl Diphosphate 3e-07
3mzv_A341 Crystal Structure Of A Decaprenyl Diphosphate Synth 6e-06
3aqb_B325 M. Luteus B-P 26 Heterodimeric Hexaprenyl Diphospha 1e-05
3lom_A313 Crystal Structure Of Geranyltransferase From Legion 5e-05
3lmd_A360 Crystal Structure Of Geranylgeranyl Pyrophosphate S 6e-05
3ipi_A295 Crystal Structure Of A Geranyltranstransferase From 1e-04
3nf2_A352 Crystal Structure Of Polyprenyl Synthetase From Str 1e-04
3oyr_A345 Crystal Structure Of Polyprenyl Synthase From Caulo 3e-04
>pdb|3KRA|A Chain A, Mint Heterotetrameric Geranyl Pyrophosphate Synthase In Complex With Magnesium Length = 295 Back     alignment and structure 
Iteration: 1

 Score =  201 bits (512), Expect = 3e-52,   Method: Compositional matrix adjust.
 Identities = 117/296 (39%), Positives = 168/296 (56%), Gaps = 53/296 (17%)
Query: 61  IQIDEYMTLKAKKINKALFEGAAVPL--------ILQYPTLPNHEGERVHGTLCIASCEL 112
              D YM  KAK +NKAL   AAV +         ++Y  L    G+RV   LCIA+CEL
Sbjct: 2   FDFDGYMLRKAKSVNKAL--EAAVQMKEPLKIHESMRYSLLAG--GKRVRPMLCIAACEL 57
Query: 113 VGGNESSVMPLACAAEMLVTLAL--------------------------------NRALL 140
           VGG+ES+ MP ACA EM+ T++L                                  ALL
Sbjct: 58  VGGDESTAMPAACAVEMIHTMSLMHDDLPCMDNDDLRRGKPTNHMAFGESVAVLAGDALL 117
Query: 141 CYAVEHMATKTKNVSPDRLVRAIGEISSAVGTRGVLAGRIMEINSKG-KDVSLSELDFIK 199
            +A EH+A  TK   P+R+VR +GE++ ++G+ G++AG+++++ S+G  +V L  L+FI 
Sbjct: 118 SFAFEHVAAATKGAPPERIVRVLGELAVSIGSEGLVAGQVVDVCSEGMAEVGLDHLEFIH 177
Query: 200 RLRCGKLIEASVVCGVLIGGGSEEDIEKLRKYGKCVGLAYQVWDDILDNMKKKKEAGD-- 257
             +   L++ SVV G ++GGG EE++ KLRK+  C+GL +QV DDILD  K  KE G   
Sbjct: 178 HHKTAALLQGSVVLGAILGGGKEEEVAKLRKFANCIGLLFQVVDDILDVTKSSKELGKTA 237
Query: 258 ------DEATYPKLMGVAGAKRYAKELVAEANQELAYFDPTRAAPLYHLADFLVSR 307
                 D+ TYPKL+GV  +K +A  L  EA ++L +F P RAAPL  LA+++  R
Sbjct: 238 GKDLVADKTTYPKLIGVEKSKEFADRLNREAQEQLLHFHPHRAAPLIALANYIAYR 293
>pdb|2J1O|A Chain A, Geranylgeranyl Diphosphate Synthase From Sinapis Alba Length = 268 Back     alignment and structure
>pdb|2J1P|A Chain A, Geranylgeranyl Diphosphate Synthase From Sinapis Alba In Complex With Ggpp Length = 293 Back     alignment and structure
>pdb|4F62|A Chain A, Crystal Structure Of A Putative Farnesyl-Diphosphate Synthase From Marinomonas Sp. Med121 (Target Efi-501980) Length = 317 Back     alignment and structure
>pdb|1RQI|A Chain A, Active Conformation Of Farnesyl Pyrophosphate Synthase Bound To Isopentyl Pyrophosphate And Dimethylallyl S- Thiolodiphosphate Length = 300 Back     alignment and structure
>pdb|2FOR|A Chain A, Crystal Structure Of The Shigella Flexneri Farnesyl Pyrophosphate Synthase Complex With An Isopentenyl Pyrophosphate Length = 323 Back     alignment and structure
>pdb|1RQJ|A Chain A, Active Conformation Of Farnesyl Pyrophosphate Synthase Bound To Isopentyl Pyrophosphate And Risedronate Length = 299 Back     alignment and structure
>pdb|3P41|A Chain A, Crystal Structure Of Polyprenyl Synthetase From Pseudomonas Fluorescens Pf-5 Complexed With Magnesium And Isoprenyl Pyrophosphate Length = 303 Back     alignment and structure
>pdb|3LJI|A Chain A, Crystal Structure Of Putative Geranyltranstransferase From Pseudomonas Fluorescens Pf-5 Length = 304 Back     alignment and structure
>pdb|3TS7|A Chain A, Crystal Structure Of Farnesyl Diphosphate Synthase (Target Efi-501951) From Methylococcus Capsulatus Length = 324 Back     alignment and structure
>pdb|3UCA|A Chain A, Crystal Structure Of Isoprenoid Synthase (Target Efi-501974) From Clostridium Perfringens Length = 324 Back     alignment and structure
>pdb|3P8L|A Chain A, Crystal Structure Of Polyprenyl Synthase From Enterococcus Faecalis V583 Length = 302 Back     alignment and structure
>pdb|3OAB|B Chain B, Mint Deletion Mutant Of Heterotetrameric Geranyl Pyrophosphate Synthase In Complex With Ligands Length = 264 Back     alignment and structure
>pdb|3Q1O|A Chain A, Crystal Structure Of Geranyltransferase From Helicobacter Pylori Complexed With Magnesium And Isoprenyl Diphosphate Length = 310 Back     alignment and structure
>pdb|3LLW|A Chain A, Crystal Structure Of Geranyltransferase From Helicobacter Pylori 26695 Length = 311 Back     alignment and structure
>pdb|3M9U|A Chain A, Crystal Structure Of Geranylgeranyl Pyrophosphate Synthase From Lactobacillus Brevis Atcc 367 Length = 309 Back     alignment and structure
>pdb|3P8R|A Chain A, Crystal Structure Of Polyprenyl Synthase From Vibrio Cholerae Length = 302 Back     alignment and structure
>pdb|3KRA|B Chain B, Mint Heterotetrameric Geranyl Pyrophosphate Synthase In Complex With Magnesium Length = 274 Back     alignment and structure
>pdb|3QKC|B Chain B, Crystal Structure Of Geranyl Diphosphate Synthase Small Subunit From Antirrhinum Majus Length = 273 Back     alignment and structure
>pdb|1RTR|A Chain A, Crystal Structure Of S. Aureus Farnesyl Pyrophosphate Synthase Length = 301 Back     alignment and structure
>pdb|1WY0|A Chain A, Crystal Structure Of Geranylgeranyl Pyrophosphate Synthetase From Pyrococcus Horikoshii Ot3 Length = 342 Back     alignment and structure
>pdb|3NPK|A Chain A, The Crystal Structure Of Geranyltranstransferase From Campylobacter Jejuni Length = 291 Back     alignment and structure
>pdb|3LVS|A Chain A, Crystal Structure Of Farnesyl Diphosphate Synthase From Rhodobacter Capsulatus Sb1003 Length = 298 Back     alignment and structure
>pdb|2H8O|A Chain A, The 1.6a Crystal Structure Of The Geranyltransferase From Agrobacterium Tumefaciens Length = 335 Back     alignment and structure
>pdb|3M0G|A Chain A, Crystal Structure Of Putative Farnesyl Diphosphate Synthase From Rhodobacter Capsulatus Length = 297 Back     alignment and structure
>pdb|3MZV|A Chain A, Crystal Structure Of A Decaprenyl Diphosphate Synthase From Rhodobacter Capsulatus Length = 341 Back     alignment and structure
>pdb|3AQB|B Chain B, M. Luteus B-P 26 Heterodimeric Hexaprenyl Diphosphate Synthase In Complex With Magnesium Length = 325 Back     alignment and structure
>pdb|3LOM|A Chain A, Crystal Structure Of Geranyltransferase From Legionella Pneumophila Length = 313 Back     alignment and structure
>pdb|3LMD|A Chain A, Crystal Structure Of Geranylgeranyl Pyrophosphate Synthase From Corynebacterium Glutamicum Atcc 13032 Length = 360 Back     alignment and structure
>pdb|3IPI|A Chain A, Crystal Structure Of A Geranyltranstransferase From The Methanosarcina Mazei Length = 295 Back     alignment and structure
>pdb|3NF2|A Chain A, Crystal Structure Of Polyprenyl Synthetase From Streptomyces Coelicolor A3(2) Length = 352 Back     alignment and structure
>pdb|3OYR|A Chain A, Crystal Structure Of Polyprenyl Synthase From Caulobacter Crescentus Cb15 Complexed With Calcium And Isoprenyl Diphosphate Length = 345 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query309
2j1p_A293 Geranylgeranyl pyrophosphate synthetase; transfera 6e-72
3ts7_A324 Geranyltranstransferase; isoprenoid synthesis, far 9e-69
2h8o_A335 Geranyltranstransferase; geranyltransferase,agroba 2e-68
3lsn_A304 Geranyltranstransferase; structural genomics, prot 4e-68
4f62_A317 Geranyltranstransferase; enzyme function initiativ 7e-68
3uca_A324 Geranyltranstransferase; isoprenoid synthesis, iso 2e-67
1rqj_A299 Geranyltranstransferase; bisphosphonate, isoprenyl 1e-65
1rtr_A301 Geranyltranstransferase; 2.50A {Staphylococcus aur 1e-64
3p8r_A302 Geranyltranstransferase; isoprenyl synthase, struc 3e-63
3m0g_A297 Farnesyl diphosphate synthase; structural genomics 9e-62
3lom_A313 Geranyltranstransferase; geranyltransferase, struc 2e-61
3p8l_A302 Geranyltranstransferase; isoprenyl synthase, struc 7e-61
3pde_A309 Farnesyl-diphosphate synthase; isoprenyl diphospha 7e-61
3llw_A311 Geranyltranstransferase (ISPA); structural genomic 4e-58
3npk_A291 Geranyltranstransferase; isoprene biosynthesis, SG 4e-58
3kra_B274 Geranyl diphosphate synthase small subunit; prenyl 9e-53
3qkc_B273 Geranyl diphosphate synthase small subunit; struct 6e-49
2ftz_A284 Geranyltranstransferase; TM0161, structural GE joi 3e-35
3nf2_A352 Putative polyprenyl synthetase; isoprenyl diphosph 8e-28
4fp4_A285 Polyprenyl synthetase; isoprenoid synthesis, isopr 2e-23
1wy0_A342 Geranylgeranyl pyrophosphate synthetase; pyrococcu 2e-21
3ipi_A295 Geranyltranstransferase; isoprene biosynthesis, he 4e-20
4dhd_A358 Polyprenyl synthetase; isoprenoid synthesis, isopr 2e-19
3pko_A334 Geranylgeranyl pyrophosphate synthase; isoprenyl d 1e-15
1wmw_A330 Geranylgeranyl diphosphate synthetase; GGPP, preny 3e-15
3lk5_A380 Geranylgeranyl pyrophosphate synthase; structural 4e-15
3mzv_A341 Decaprenyl diphosphate synthase; transferase, stru 2e-14
3oyr_A345 Trans-isoprenyl diphosphate synthase; isoprenyl sy 4e-14
3rmg_A334 Octaprenyl-diphosphate synthase; structural genomi 6e-14
3apz_A348 Geranyl diphosphate synthase; prenyltransferase, a 7e-14
3aqb_B325 Component B of hexaprenyl diphosphate synthase; pr 1e-13
2azj_A289 Geranylgeranyl pyrophosphate synthetase; hexpps, t 2e-13
3lmd_A360 Geranylgeranyl pyrophosphate synthase; isoprenyl d 3e-13
2q80_A301 Geranylgeranyl pyrophosphate synthetase; isoprenoi 3e-13
1uby_A367 FPS, farnesyl diphosphate synthase; transferase, i 4e-13
2her_A368 Fragment, farnesyl pyrophosphate synthase; farnesy 4e-13
2qis_A374 Farnesyl pyrophosphate synthetase; trans-prenyltra 2e-11
1yhl_A362 Farnesyl pyrophosphate synthase; farnesyl diphosph 1e-10
3dyh_A390 Farnesyl pyrophosphate synthase; protein-bisphosph 2e-10
2e8v_A340 Geranylgeranyl pyrophosphate synthetase; prenyltra 3e-10
3tc1_A315 Octaprenyl pyrophosphate synthase; all alpha-helic 8e-10
1v4e_A299 Octoprenyl-diphosphate synthase; trans-type prenyl 1e-09
2ihi_A395 Pyrophosphate synthase; PV092040, structural genom 1e-08
>2j1p_A Geranylgeranyl pyrophosphate synthetase; transferase, isoprene biosynthesis, multifunctional enzyme, carotenoid biosynthesis; HET: GRG; 1.8A {Sinapis alba} PDB: 2j1o_A 3kra_A 3krc_A* 3krf_A* 3kro_A* 3krp_A* 3oab_A* 3oac_A* Length = 293 Back     alignment and structure
 Score =  223 bits (570), Expect = 6e-72
 Identities = 119/301 (39%), Positives = 168/301 (55%), Gaps = 56/301 (18%)

Query: 52  SNNNNPFPEIQIDEYMTLKAKKINKALFEGAAVPLILQYPTLPNHE---------GERVH 102
              ++         Y+  KA  +NKAL    AVPL  + P L  HE         G+RV 
Sbjct: 2   MRGSHHHHHTDPISYIIRKADSVNKALDS--AVPL--REP-LKIHEAMRYSLLAGGKRVR 56

Query: 103 GTLCIASCELVGGNESSVMPLACAAEMLVT--L-----------ALNR------------ 137
             LCIA+CELVGG ES  MP ACA EM+ T  L            L R            
Sbjct: 57  PVLCIAACELVGGEESLAMPAACAVEMIHTMSLIHDDLPCMDNDDLRRGKPTNHKVYGED 116

Query: 138 -------ALLCYAVEHMATKTKN-VSPDRLVRAIGEISSAVGTRGVLAGRIMEINSKGK- 188
                  ALL +A EH+A+ T + VSP R+VRA+GE++ A+GT G++AG++++I+S+G  
Sbjct: 117 VAVLAGDALLSFAFEHLASATSSEVSPARVVRAVGELAKAIGTEGLVAGQVVDISSEGLD 176

Query: 189 --DVSLSELDFIKRLRCGKLIEASVVCGVLIGGGSEEDIEKLRKYGKCVGLAYQVWDDIL 246
             +V L  L FI   +   L+EAS V G +IGGGS+E+IE+LRK+ +C+GL +QV DDIL
Sbjct: 177 LNNVGLEHLKFIHLHKTAALLEASAVLGGIIGGGSDEEIERLRKFARCIGLLFQVVDDIL 236

Query: 247 DNMKKKKEAGDDEATYPKLMGVAGAKRYAKELVAEANQELAYFDPTRAAPLYHLADFLVS 306
           D           + TYPKLMG+  ++ +A++L  EA  +L  FD  + APL  LA+++ +
Sbjct: 237 D------VTKSSKLTYPKLMGLEKSREFAEKLNTEARDQLLGFDSDKVAPLLALANYIAN 290

Query: 307 R 307
           R
Sbjct: 291 R 291
>3ts7_A Geranyltranstransferase; isoprenoid synthesis, farnesyl diphosphate synthase; 1.94A {Methylococcus capsulatus} Length = 324 Back     alignment and structure
>2h8o_A Geranyltranstransferase; geranyltransferase,agrobacterium tumefaciens, structural GEN PSI-2, protein structure initiative; 1.60A {Agrobacterium tumefaciens} Length = 335 Back     alignment and structure
>3lsn_A Geranyltranstransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium, nysgxrc; HET: MSE; 1.35A {Pseudomonas fluorescens} PDB: 3lji_A* 3p41_A* Length = 304 Back     alignment and structure
>4f62_A Geranyltranstransferase; enzyme function initiative, structural genomics; 2.10A {Marinomonas SP} Length = 317 Back     alignment and structure
>3uca_A Geranyltranstransferase; isoprenoid synthesis, isoprenoid diphosphate synthase; 2.00A {Clostridium perfringens} Length = 324 Back     alignment and structure
>1rqj_A Geranyltranstransferase; bisphosphonate, isoprenyl synthase; HET: IPR RIS; 1.95A {Escherichia coli} SCOP: a.128.1.1 PDB: 1rqi_A* 2for_A* Length = 299 Back     alignment and structure
>1rtr_A Geranyltranstransferase; 2.50A {Staphylococcus aureus} SCOP: a.128.1.1 Length = 301 Back     alignment and structure
>3p8r_A Geranyltranstransferase; isoprenyl synthase, structural genomics, PSI, protein struct initiative, nysgrc; 2.50A {Vibrio cholerae} Length = 302 Back     alignment and structure
>3m0g_A Farnesyl diphosphate synthase; structural genomics, protein structure initiative, NYSGXRC, biosynthesis, transferase, PSI-2; 1.90A {Rhodobacter capsulatus} PDB: 3lvs_A Length = 297 Back     alignment and structure
>3lom_A Geranyltranstransferase; geranyltransferase, structural genomics, PSI, protein structure initiative, nysgrc; 2.30A {Legionella pneumophila subsp} Length = 313 Back     alignment and structure
>3p8l_A Geranyltranstransferase; isoprenyl synthase, structural genomics, PSI, protein struct initiative, nysgrc; 2.00A {Enterococcus faecalis} Length = 302 Back     alignment and structure
>3pde_A Farnesyl-diphosphate synthase; isoprenyl diphosphate synthase, structural genomics, PSI, PR structure initiative; HET: IPE; 1.75A {Lactobacillus brevis} PDB: 3m9u_A* Length = 309 Back     alignment and structure
>3llw_A Geranyltranstransferase (ISPA); structural genomics, PSI, protein structure initiative, nysgrc; 2.30A {Helicobacter pylori} PDB: 3q1o_A* Length = 311 Back     alignment and structure
>3npk_A Geranyltranstransferase; isoprene biosynthesis, SGX, structural genomics protein structure initiative; 1.50A {Campylobacter jejuni} Length = 291 Back     alignment and structure
>3kra_B Geranyl diphosphate synthase small subunit; prenyltransferase, isoprene biosynthesis, isoprenyl pyrophosphate synthase, transferase; 1.90A {Mentha x piperita} PDB: 3krc_B* 3krf_B* 3kro_B* 3krp_B* 3oab_B* 3oac_B* Length = 274 Back     alignment and structure
>3qkc_B Geranyl diphosphate synthase small subunit; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; 2.20A {Antirrhinum majus} Length = 273 Back     alignment and structure
>2ftz_A Geranyltranstransferase; TM0161, structural GE joint center for structural genomics, JCSG, protein structu initiative, PSI; HET: MLY; 1.90A {Thermotoga maritima} Length = 284 Back     alignment and structure
>3nf2_A Putative polyprenyl synthetase; isoprenyl diphosphate synthase, structural genomics, PSI, PR structure initiative, nysgrc; 2.20A {Streptomyces coelicolor} Length = 352 Back     alignment and structure
>4fp4_A Polyprenyl synthetase; isoprenoid synthesis, isoprenoid diphosphate synthase, trans; HET: GER UNL; 2.00A {Pyrobaculum calidifontis} Length = 285 Back     alignment and structure
>1wy0_A Geranylgeranyl pyrophosphate synthetase; pyrococcus horikosh structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.20A {Pyrococcus horikoshii} Length = 342 Back     alignment and structure
>3ipi_A Geranyltranstransferase; isoprene biosynthesis, helical bundle, protein structure initiative II (PSI II), structural genomics, nysgxrc; 1.90A {Methanosarcina mazei} Length = 295 Back     alignment and structure
>4dhd_A Polyprenyl synthetase; isoprenoid synthesis, isoprenoid diphosphate synthase, trans; 1.65A {Pyrobaculum calidifontis} Length = 358 Back     alignment and structure
>3pko_A Geranylgeranyl pyrophosphate synthase; isoprenyl diphosphate synthase, structural genomics, PSI, PR structure initiative, nysgrc; HET: CIT; 1.98A {Lactobacillus brevis} PDB: 3n3d_A Length = 334 Back     alignment and structure
>1wmw_A Geranylgeranyl diphosphate synthetase; GGPP, prenyl diphosphate synthase, structural genom riken structural genomics/proteomics initiative; 1.55A {Thermus thermophilus} Length = 330 Back     alignment and structure
>3lk5_A Geranylgeranyl pyrophosphate synthase; structural genomics, protein structure initiative, geranylge pyrophosphate synthase; 1.90A {Corynebacterium glutamicum} PDB: 3qqv_A* Length = 380 Back     alignment and structure
>3mzv_A Decaprenyl diphosphate synthase; transferase, structural genomics, PSI-2, protein structure initiative; 1.90A {Rhodobacter capsulatus} Length = 341 Back     alignment and structure
>3oyr_A Trans-isoprenyl diphosphate synthase; isoprenyl synthase, PSI, protein structure initiative; HET: IPE; 2.00A {Caulobacter crescentus} Length = 345 Back     alignment and structure
>3rmg_A Octaprenyl-diphosphate synthase; structural genomics, protein structure initiative, isoprene biosynthesis, transferase; 2.30A {Bacteroides thetaiotaomicron} Length = 334 Back     alignment and structure
>3apz_A Geranyl diphosphate synthase; prenyltransferase, all alpha-helices fold, chroloplast, TRAN isoprenoid biosynthetic process; 2.60A {Arabidopsis thaliana} PDB: 3aq0_A* Length = 348 Back     alignment and structure
>3aqb_B Component B of hexaprenyl diphosphate synthase; prenyltransferase, transferase; 2.40A {Micrococcus luteus} PDB: 3aqc_B* Length = 325 Back     alignment and structure
>2azj_A Geranylgeranyl pyrophosphate synthetase; hexpps, trans-prenyltransferase; 2.40A {Sulfolobus solfataricus} PDB: 2azk_A Length = 289 Back     alignment and structure
>3lmd_A Geranylgeranyl pyrophosphate synthase; isoprenyl diphosphate synthase, structural genomics, PSI, protein structure initiative, nysgrc; 1.90A {Corynebacterium glutamicum} PDB: 3q2q_A* Length = 360 Back     alignment and structure
>2q80_A Geranylgeranyl pyrophosphate synthetase; isoprenoid pathway, isopentenyl transferase, structural GENO structural genomics consortium, SGC; HET: GRG; 2.70A {Homo sapiens} SCOP: a.128.1.1 Length = 301 Back     alignment and structure
>1uby_A FPS, farnesyl diphosphate synthase; transferase, isoprene biosynthesis, cholesterol biosynthesis; HET: DMA; 2.40A {Gallus gallus} SCOP: a.128.1.1 PDB: 1ubw_A* 1ubv_A* 1ubx_A* 1fps_A Length = 367 Back     alignment and structure
>2qis_A Farnesyl pyrophosphate synthetase; trans-prenyltransferase, structural genomics, structural GEN consortium, SGC, transferase; HET: RIS; 1.80A {Homo sapiens} PDB: 4dem_F* 1yv5_A* 1yq7_A* 2opm_A* 2opn_A* 3cp6_A* 2rah_A* 2vf6_A* 1zw5_A* 3b7l_A* 3s4j_A* 3rye_A* 3n45_F* 2f89_F* 2f7m_F* 2f8z_F* 2f8c_F* 2f92_F* 2f9k_F* 3n1v_F* ... Length = 374 Back     alignment and structure
>1yhl_A Farnesyl pyrophosphate synthase; farnesyl diphosphate synthase, bisphosphonate, dimethyl ALLY pyrophosphate sulfate, FPPS, transferase; HET: DMA RIS; 1.95A {Trypanosoma cruzi} PDB: 1yhk_A* 1yhm_A* 3iba_A* 3ick_A* 3icm_A* 3icn_A* 3icz_A* 3id0_A* Length = 362 Back     alignment and structure
>3dyh_A Farnesyl pyrophosphate synthase; protein-bisphosphonate complex, isoprene biosynthesis, transferase; HET: 721; 1.94A {Trypanosoma brucei} PDB: 2ewg_A* 2i19_A* 2p1c_A* 3dyf_A* 3dyg_A* 2ogd_A* 3efq_A* 3egt_A* Length = 390 Back     alignment and structure
>2e8v_A Geranylgeranyl pyrophosphate synthetase; prenyltransferase, farnesyl pyrophosphate, bisphosphonate; HET: GRG; 1.80A {Saccharomyces cerevisiae} PDB: 2e8t_A* 2e8u_A* 2dh4_A* 2e8w_A* 2e8x_A* 2e90_A* 2e91_A* 2e92_A* 2e93_A* 2e94_A* 2e95_A* 2z4v_A* 2z4w_A* 2z4x_A* 2z4y_A* 2z4z_A* 2z50_A* 2z52_A* 2z78_A* 2z7h_A* ... Length = 340 Back     alignment and structure
>3tc1_A Octaprenyl pyrophosphate synthase; all alpha-helices fold, transferase; 2.00A {Helicobacter pylori} Length = 315 Back     alignment and structure
>1v4e_A Octoprenyl-diphosphate synthase; trans-type prenyltransferase, thermophilic; 2.28A {Thermotoga maritima} SCOP: a.128.1.1 PDB: 1v4j_A 1wkz_A 1vg2_A 1wl3_A 1wl0_A 1wl2_A 1v4h_A 1v4i_A 1v4k_A 2azl_A 1wl1_A 1vg4_A 1vg3_A 1vg6_A 1vg7_A Length = 299 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query309
4f62_A317 Geranyltranstransferase; enzyme function initiativ 100.0
3ts7_A324 Geranyltranstransferase; isoprenoid synthesis, far 100.0
3lsn_A304 Geranyltranstransferase; structural genomics, prot 100.0
3lom_A313 Geranyltranstransferase; geranyltransferase, struc 100.0
2h8o_A335 Geranyltranstransferase; geranyltransferase,agroba 100.0
3m0g_A297 Farnesyl diphosphate synthase; structural genomics 100.0
3p8r_A302 Geranyltranstransferase; isoprenyl synthase, struc 100.0
3llw_A311 Geranyltranstransferase (ISPA); structural genomic 100.0
3p8l_A302 Geranyltranstransferase; isoprenyl synthase, struc 100.0
1rtr_A301 Geranyltranstransferase; 2.50A {Staphylococcus aur 100.0
3uca_A324 Geranyltranstransferase; isoprenoid synthesis, iso 100.0
1rqj_A299 Geranyltranstransferase; bisphosphonate, isoprenyl 100.0
3pde_A309 Farnesyl-diphosphate synthase; isoprenyl diphospha 100.0
2j1p_A293 Geranylgeranyl pyrophosphate synthetase; transfera 100.0
3npk_A291 Geranyltranstransferase; isoprene biosynthesis, SG 100.0
3oyr_A345 Trans-isoprenyl diphosphate synthase; isoprenyl sy 100.0
3ipi_A295 Geranyltranstransferase; isoprene biosynthesis, he 100.0
3mzv_A341 Decaprenyl diphosphate synthase; transferase, stru 100.0
1wy0_A342 Geranylgeranyl pyrophosphate synthetase; pyrococcu 100.0
3lmd_A360 Geranylgeranyl pyrophosphate synthase; isoprenyl d 100.0
4dhd_A358 Polyprenyl synthetase; isoprenoid synthesis, isopr 100.0
3nf2_A352 Putative polyprenyl synthetase; isoprenyl diphosph 100.0
3rmg_A334 Octaprenyl-diphosphate synthase; structural genomi 100.0
2ftz_A284 Geranyltranstransferase; TM0161, structural GE joi 100.0
3pko_A334 Geranylgeranyl pyrophosphate synthase; isoprenyl d 100.0
3aqb_B325 Component B of hexaprenyl diphosphate synthase; pr 100.0
3apz_A348 Geranyl diphosphate synthase; prenyltransferase, a 100.0
3lk5_A380 Geranylgeranyl pyrophosphate synthase; structural 100.0
1wmw_A330 Geranylgeranyl diphosphate synthetase; GGPP, preny 100.0
2azj_A289 Geranylgeranyl pyrophosphate synthetase; hexpps, t 100.0
2qis_A374 Farnesyl pyrophosphate synthetase; trans-prenyltra 100.0
3tc1_A315 Octaprenyl pyrophosphate synthase; all alpha-helic 100.0
1yhl_A362 Farnesyl pyrophosphate synthase; farnesyl diphosph 100.0
1v4e_A299 Octoprenyl-diphosphate synthase; trans-type prenyl 100.0
1uby_A367 FPS, farnesyl diphosphate synthase; transferase, i 100.0
2e8v_A340 Geranylgeranyl pyrophosphate synthetase; prenyltra 100.0
3kra_B274 Geranyl diphosphate synthase small subunit; prenyl 100.0
2ihi_A395 Pyrophosphate synthase; PV092040, structural genom 100.0
3dyh_A390 Farnesyl pyrophosphate synthase; protein-bisphosph 100.0
2q80_A301 Geranylgeranyl pyrophosphate synthetase; isoprenoi 100.0
3mav_A395 Farnesyl pyrophosphate synthase; PV092040, structu 100.0
3qkc_B273 Geranyl diphosphate synthase small subunit; struct 100.0
2q58_A368 Fragment, farnesyl pyrophosphate synthase; farnesy 100.0
2her_A368 Fragment, farnesyl pyrophosphate synthase; farnesy 100.0
4fp4_A285 Polyprenyl synthetase; isoprenoid synthesis, isopr 100.0
3vj8_A343 Squalene synthase; farnesyl-diphosphate farnesyltr 91.9
3acx_A293 Dehydrosqualene synthase; CRTM, carotenoid biosynt 90.15
4hd1_A294 Squalene synthase HPNC; MCSG, structural genomics, 90.11
>4f62_A Geranyltranstransferase; enzyme function initiative, structural genomics; 2.10A {Marinomonas SP} Back     alignment and structure
Probab=100.00  E-value=2.5e-52  Score=394.84  Aligned_cols=243  Identities=30%  Similarity=0.533  Sum_probs=215.9

Q ss_pred             hhHHHHHHHHHHHHHHHHhccCCccc-----c----cccccCCCCCCcchHHHHHHHHHHHhCCCchhhhhHHHHHHHHH
Q 021668           61 IQIDEYMTLKAKKINKALFEGAAVPL-----I----LQYPTLPNHEGERVHGTLCIASCELVGGNESSVMPLACAAEMLV  131 (309)
Q Consensus        61 ~~~~~~l~~~~~~i~~~l~~~~~~~~-----~----~~y~l~~~~gGKrlRP~L~ll~~~~~g~~~~~~~~~AaaiEliH  131 (309)
                      |++.+++++....||+.|++  .++.     .    ++|.+..  ||||+||.|++++++++|++.+.++++|++|||||
T Consensus         3 m~~~~~l~~~~~~ve~~L~~--~l~~~~~~~~l~~a~~y~~~~--gGKrlRp~Lvl~~~~~~g~~~~~~~~~A~avEliH   78 (317)
T 4f62_A            3 MNLKQFSTYTQSRVDQYLEQ--QLSDYAPANQLHNAMRYSLFN--GGKRIRPMLTYASAQLVGDISSLTDASAAALESIH   78 (317)
T ss_dssp             CCHHHHHHHHHHHHHHHHHH--HSCCCGGGHHHHHHHHHHHC---CCCCHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHH
T ss_pred             CcHHHHHHHHHHHHHHHHHH--HhcccCCcHHHHHHHHHHHhC--CCcchHHHHHHHHHHHhCCCHHHHHHHHHHHHHHH
Confidence            56889999999999999998  4431     1    8999988  99999999999999999999999999999999999


Q ss_pred             HhhH--------------------------------HHHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHhccccchhhh
Q 021668          132 TLAL--------------------------------NRALLCYAVEHMATKTKNVSPDRLVRAIGEISSAVGTRGVLAGR  179 (309)
Q Consensus       132 ~aSL--------------------------------GD~Ll~~Af~~l~~~~~~~~~~~~~~~~~~la~~~G~~~~~~GQ  179 (309)
                      +|||                                ||+|++.||+++++. .+.++...++++..+++++|..+||.||
T Consensus        79 ~aSLIHDDip~mD~s~~RRG~pt~h~~~G~~~AIlaGD~Ll~~Af~~l~~~-~~~~~~~~~~~i~~la~a~g~~~m~~GQ  157 (317)
T 4f62_A           79 AYSLIHDDLPAMDNDELRRGKPTCHIQFDEATAILAGDALQTFAFELLSNP-TSAQPELAIKLIQELVVASGRNGMITGQ  157 (317)
T ss_dssp             HHHHHHHHSTTSCC-------CCHHHHSCHHHHHHHHHHHHHHHHHHHTCT-TCCCHHHHHHHHHHHHHHHSTTTHHHHH
T ss_pred             HHHHHHCCcccccCCCCcCCCccHHhhcCHHHHHHHHHHHHHHHHHHHHhc-cCCCHHHHHHHHHHHHHHHhhhhHHHhH
Confidence            9999                                999999999999986 3456667788999999999888999999


Q ss_pred             HHHhhhCCCCCCHHHHHHHHHhchHHHHHHHHHHHHHhcC-CCHHHHHHHHHHHHHHHHHHHHHhchhhhcccchhcC--
Q 021668          180 IMEINSKGKDVSLSELDFIKRLRCGKLIEASVVCGVLIGG-GSEEDIEKLRKYGKCVGLAYQVWDDILDNMKKKKEAG--  256 (309)
Q Consensus       180 ~~Dl~~~~~~~s~~~~~~i~~~KTg~Lf~~a~~~Gailag-~~~~~~~~l~~~G~~lGlAFQI~DDiLD~~~~~~~~G--  256 (309)
                      .+|+.+.++.+++++|.+|+++|||+||++||++|++++| ++++.++.+++||+++|+||||+||++|++++++.+|  
T Consensus       158 ~lDl~~~~~~~t~~~y~~i~~~KTg~L~~~a~~~Ga~lag~a~~~~~~~l~~~g~~lGlAFQI~DDiLD~~gd~~~~GK~  237 (317)
T 4f62_A          158 MIDLSSENKNISLAELEQMHVHKTGALIKASVRMGALSTGQVKPEQLAKLDAYAHAIGLAFQVQDDIIDLTSDTETLGKT  237 (317)
T ss_dssp             HHHHHTSSSCCCHHHHHHHHHHHTHHHHHHHHHHHHHTTTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHTC---------
T ss_pred             HHHHhccCCCCCHHHHHHHHHhchHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCChHhhCCC
Confidence            9999998778899999999999999999999999999999 8999999999999999999999999999999998887  


Q ss_pred             ------CCCchhhhhhhHHHHHHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHhccC
Q 021668          257 ------DDEATYPKLMGVAGAKRYAKELVAEANQELAYFDPTRAAPLYHLADFLVSRHK  309 (309)
Q Consensus       257 ------~gK~T~p~l~gle~A~~~a~~~~~~A~~~L~~l~~~~~~~L~~l~~~l~~R~~  309 (309)
                            +||.|||+++|+++|++.+++|.++|++.|+.||. .++.|.+|++|+++|++
T Consensus       238 ~g~Dl~egK~T~p~l~gle~a~~~a~~~~~~A~~~L~~l~~-~~~~L~~l~~~~~~R~~  295 (317)
T 4f62_A          238 QFSDAEANKATYPKLLGLDGAKALVVRLHEQAIAQISEFGD-KSQPLTDLANYIIDRNH  295 (317)
T ss_dssp             -------CCCCHHHHHHHHHHHHHHHHHHHHHHHHHGGGGG-GGHHHHHHHHHHHC---
T ss_pred             cchHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHhCch-hHHHHHHHHHHHHHhcc
Confidence                  79999999999999999999999999999999975 67899999999999974
>3ts7_A Geranyltranstransferase; isoprenoid synthesis, farnesyl diphosphate synthase; 1.94A {Methylococcus capsulatus} Back     alignment and structure
>3lsn_A Geranyltranstransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium, nysgxrc; HET: MSE; 1.35A {Pseudomonas fluorescens} PDB: 3lji_A* 3p41_A* Back     alignment and structure
>3lom_A Geranyltranstransferase; geranyltransferase, structural genomics, PSI, protein structure initiative, nysgrc; 2.30A {Legionella pneumophila subsp} Back     alignment and structure
>2h8o_A Geranyltranstransferase; geranyltransferase,agrobacterium tumefaciens, structural GEN PSI-2, protein structure initiative; 1.60A {Agrobacterium tumefaciens} Back     alignment and structure
>3m0g_A Farnesyl diphosphate synthase; structural genomics, protein structure initiative, NYSGXRC, biosynthesis, transferase, PSI-2; 1.90A {Rhodobacter capsulatus} PDB: 3lvs_A Back     alignment and structure
>3p8r_A Geranyltranstransferase; isoprenyl synthase, structural genomics, PSI, protein struct initiative, nysgrc; 2.50A {Vibrio cholerae} SCOP: a.128.1.1 Back     alignment and structure
>3llw_A Geranyltranstransferase (ISPA); structural genomics, PSI, protein structure initiative, nysgrc; 2.30A {Helicobacter pylori} PDB: 3q1o_A* Back     alignment and structure
>3p8l_A Geranyltranstransferase; isoprenyl synthase, structural genomics, PSI, protein struct initiative, nysgrc; 2.00A {Enterococcus faecalis} Back     alignment and structure
>1rtr_A Geranyltranstransferase; 2.50A {Staphylococcus aureus} SCOP: a.128.1.1 Back     alignment and structure
>3uca_A Geranyltranstransferase; isoprenoid synthesis, isoprenoid diphosphate synthase; 2.00A {Clostridium perfringens} Back     alignment and structure
>1rqj_A Geranyltranstransferase; bisphosphonate, isoprenyl synthase; HET: IPR RIS; 1.95A {Escherichia coli} SCOP: a.128.1.1 PDB: 1rqi_A* 2for_A* Back     alignment and structure
>3pde_A Farnesyl-diphosphate synthase; isoprenyl diphosphate synthase, structural genomics, PSI, PR structure initiative; HET: IPE; 1.75A {Lactobacillus brevis} PDB: 3m9u_A* Back     alignment and structure
>2j1p_A Geranylgeranyl pyrophosphate synthetase; transferase, isoprene biosynthesis, multifunctional enzyme, carotenoid biosynthesis; HET: GRG; 1.8A {Sinapis alba} PDB: 2j1o_A 3kra_A 3krc_A* 3krf_A* 3kro_A* 3krp_A* 3oab_A* 3oac_A* Back     alignment and structure
>3npk_A Geranyltranstransferase; isoprene biosynthesis, SGX, structural genomics protein structure initiative; 1.50A {Campylobacter jejuni} Back     alignment and structure
>3oyr_A Trans-isoprenyl diphosphate synthase; isoprenyl synthase, PSI, protein structure initiative; HET: IPE; 2.00A {Caulobacter crescentus} Back     alignment and structure
>3ipi_A Geranyltranstransferase; isoprene biosynthesis, helical bundle, protein structure initiative II (PSI II), structural genomics, nysgxrc; 1.90A {Methanosarcina mazei} Back     alignment and structure
>3mzv_A Decaprenyl diphosphate synthase; transferase, structural genomics, PSI-2, protein structure initiative; 1.90A {Rhodobacter capsulatus} Back     alignment and structure
>1wy0_A Geranylgeranyl pyrophosphate synthetase; pyrococcus horikosh structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.20A {Pyrococcus horikoshii} Back     alignment and structure
>3lmd_A Geranylgeranyl pyrophosphate synthase; isoprenyl diphosphate synthase, structural genomics, PSI, protein structure initiative, nysgrc; 1.90A {Corynebacterium glutamicum} PDB: 3q2q_A* Back     alignment and structure
>4dhd_A Polyprenyl synthetase; isoprenoid synthesis, isoprenoid diphosphate synthase, trans; 1.65A {Pyrobaculum calidifontis} PDB: 4gp1_A* 4gp2_A* Back     alignment and structure
>3nf2_A Putative polyprenyl synthetase; isoprenyl diphosphate synthase, structural genomics, PSI, PR structure initiative, nysgrc; 2.20A {Streptomyces coelicolor} Back     alignment and structure
>3rmg_A Octaprenyl-diphosphate synthase; structural genomics, protein structure initiative, isoprene biosynthesis, transferase; 2.30A {Bacteroides thetaiotaomicron} Back     alignment and structure
>2ftz_A Geranyltranstransferase; TM0161, structural GE joint center for structural genomics, JCSG, protein structu initiative, PSI; HET: MLY; 1.90A {Thermotoga maritima} Back     alignment and structure
>3pko_A Geranylgeranyl pyrophosphate synthase; isoprenyl diphosphate synthase, structural genomics, PSI, PR structure initiative, nysgrc; HET: CIT; 1.98A {Lactobacillus brevis} PDB: 3n3d_A Back     alignment and structure
>3aqb_B Component B of hexaprenyl diphosphate synthase; prenyltransferase, transferase; 2.40A {Micrococcus luteus} PDB: 3aqc_B* Back     alignment and structure
>3apz_A Geranyl diphosphate synthase; prenyltransferase, all alpha-helices fold, chroloplast, TRAN isoprenoid biosynthetic process; 2.60A {Arabidopsis thaliana} PDB: 3aq0_A* Back     alignment and structure
>3lk5_A Geranylgeranyl pyrophosphate synthase; structural genomics, protein structure initiative, geranylge pyrophosphate synthase; 1.90A {Corynebacterium glutamicum} PDB: 3qqv_A* Back     alignment and structure
>1wmw_A Geranylgeranyl diphosphate synthetase; GGPP, prenyl diphosphate synthase, structural genom riken structural genomics/proteomics initiative; 1.55A {Thermus thermophilus} Back     alignment and structure
>2azj_A Geranylgeranyl pyrophosphate synthetase; hexpps, trans-prenyltransferase; 2.40A {Sulfolobus solfataricus} PDB: 2azk_A Back     alignment and structure
>2qis_A Farnesyl pyrophosphate synthetase; trans-prenyltransferase, structural genomics, structural GEN consortium, SGC, transferase; HET: RIS; 1.80A {Homo sapiens} PDB: 4dem_F* 1yv5_A* 1yq7_A* 2opm_A* 2opn_A* 3cp6_A* 2rah_A* 2vf6_A* 1zw5_A* 3b7l_A* 3s4j_A* 3rye_A* 3n45_F* 2f89_F* 2f7m_F* 2f8z_F* 2f8c_F* 2f92_F* 2f9k_F* 3n1v_F* ... Back     alignment and structure
>3tc1_A Octaprenyl pyrophosphate synthase; all alpha-helices fold, transferase; 2.00A {Helicobacter pylori} Back     alignment and structure
>1yhl_A Farnesyl pyrophosphate synthase; farnesyl diphosphate synthase, bisphosphonate, dimethyl ALLY pyrophosphate sulfate, FPPS, transferase; HET: DMA RIS; 1.95A {Trypanosoma cruzi} PDB: 1yhk_A* 1yhm_A* 3iba_A* 3ick_A* 3icm_A* 3icn_A* 3icz_A* 3id0_A* Back     alignment and structure
>1v4e_A Octoprenyl-diphosphate synthase; trans-type prenyltransferase, thermophilic; 2.28A {Thermotoga maritima} SCOP: a.128.1.1 PDB: 1v4j_A 1wkz_A 1vg2_A 1wl3_A 1wl0_A 1wl2_A 1v4h_A 1v4i_A 1v4k_A 2azl_A 1wl1_A 1vg4_A 1vg3_A 1vg6_A 1vg7_A Back     alignment and structure
>1uby_A FPS, farnesyl diphosphate synthase; transferase, isoprene biosynthesis, cholesterol biosynthesis; HET: DMA; 2.40A {Gallus gallus} SCOP: a.128.1.1 PDB: 1ubw_A* 1ubv_A* 1ubx_A* 1fps_A Back     alignment and structure
>2e8v_A Geranylgeranyl pyrophosphate synthetase; prenyltransferase, farnesyl pyrophosphate, bisphosphonate; HET: GRG; 1.80A {Saccharomyces cerevisiae} PDB: 2e8t_A* 2e8u_A* 2dh4_A* 2e8w_A* 2e8x_A* 2e90_A* 2e91_A* 2e92_A* 2e93_A* 2e94_A* 2e95_A* 2z4v_A* 2z4w_A* 2z4x_A* 2z4y_A* 2z4z_A* 2z50_A* 2z52_A* 2z78_A* 2z7h_A* ... Back     alignment and structure
>3kra_B Geranyl diphosphate synthase small subunit; prenyltransferase, isoprene biosynthesis, isoprenyl pyrophosphate synthase, transferase; 1.90A {Mentha x piperita} PDB: 3krc_B* 3krf_B* 3kro_B* 3krp_B* 3oab_B* 3oac_B* Back     alignment and structure
>3dyh_A Farnesyl pyrophosphate synthase; protein-bisphosphonate complex, isoprene biosynthesis, transferase; HET: 721; 1.94A {Trypanosoma brucei} PDB: 2ewg_A* 2i19_A* 2p1c_A* 3dyf_A* 3dyg_A* 2ogd_A* 3efq_A* 3egt_A* Back     alignment and structure
>2q80_A Geranylgeranyl pyrophosphate synthetase; isoprenoid pathway, isopentenyl transferase, structural GENO structural genomics consortium, SGC; HET: GRG; 2.70A {Homo sapiens} SCOP: a.128.1.1 Back     alignment and structure
>3mav_A Farnesyl pyrophosphate synthase; PV092040, structural genomics, structural genomics consortium, SGC, transferase, isoprene biosynthesis; 2.10A {Plasmodium vivax} PDB: 3cc9_A* 3ez3_A* 3ldw_A* 3mys_A* 3ph7_A* 3rbm_A* 3ryw_A* Back     alignment and structure
>3qkc_B Geranyl diphosphate synthase small subunit; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; 2.20A {Antirrhinum majus} Back     alignment and structure
>2q58_A Fragment, farnesyl pyrophosphate synthase; farnesyl diphosphate synthase, structural genomics, structur genomics consortium, SGC; HET: ZOL; 2.37A {Cryptosporidium parvum} PDB: 2o1o_A* Back     alignment and structure
>4fp4_A Polyprenyl synthetase; isoprenoid synthesis, isoprenoid diphosphate synthase, trans; HET: GER UNL; 2.00A {Pyrobaculum calidifontis} Back     alignment and structure
>3vj8_A Squalene synthase; farnesyl-diphosphate farnesyltransferase, head-TO-head synth cholesterol biosynthesis, oxidoreductase, transferase; 1.52A {Homo sapiens} PDB: 3vj9_A 3vja_A 3vjb_A 3vjc_A* 3v66_A* 3lee_A* 3q2z_A* 3q30_A* 3asx_A* 1ezf_A* Back     alignment and structure
>3acx_A Dehydrosqualene synthase; CRTM, carotenoid biosynthesis, staphyloxanthin biosynthesis, transferase, head-TO-head condensation, inhibitor; HET: 673; 1.31A {Staphylococcus aureus} PDB: 2zcp_A* 2zcq_A* 2zcr_A* 2zcs_A* 2zy1_A* 3acw_A* 2zco_A* 3acy_A* 3npr_A* 3nri_A* 3tfn_A* 3tfp_A* 3tfv_A* 3adz_A* 3lgz_B* 3vjd_A* 3vje_A* 3ae0_A* 4ea2_A* 4e9u_A* ... Back     alignment and structure
>4hd1_A Squalene synthase HPNC; MCSG, structural genomics, PSI-biology, midwest center for S genomics, transferase; 2.40A {Alicyclobacillus acidocaldarius subsp} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 309
d1rqja_299 a.128.1.1 (A:) Farnesyl diphosphate synthase (gera 1e-20
d1rtra_290 a.128.1.1 (A:) Farnesyl diphosphate synthase (gera 1e-16
d1v4ea_280 a.128.1.1 (A:) Octoprenyl-diphosphate synthase {Th 8e-09
d2q80a1291 a.128.1.1 (A:6-296) Geranylgeranyl pyrophosphate s 7e-04
>d1rqja_ a.128.1.1 (A:) Farnesyl diphosphate synthase (geranyltranstransferase) {Escherichia coli [TaxId: 562]} Length = 299 Back     information, alignment and structure

class: All alpha proteins
fold: Terpenoid synthases
superfamily: Terpenoid synthases
family: Isoprenyl diphosphate synthases
domain: Farnesyl diphosphate synthase (geranyltranstransferase)
species: Escherichia coli [TaxId: 562]

 Score = 87.7 bits (216), Expect = 1e-20
 Identities = 74/299 (24%), Positives = 128/299 (42%), Gaps = 54/299 (18%)

Query: 63  IDEYMTLKAKKINKAL------FEGAAVPLI--LQYPTLPNHEGERVHGTLCIASCELVG 114
             + +    K+ N+AL            P++  +QY  L    G+R+   L  A+  + G
Sbjct: 3   FPQQLEACVKQANQALSRFIAPLPFQNTPVVETMQYGALLG--GKRLRPFLVYATGHMFG 60

Query: 115 GNESSVMPLACAAEMLVTLAL--------------------------NRALL------CY 142
            + +++   A A E +   +L                            A+L        
Sbjct: 61  VSTNTLDAPAAAVECIHAYSLIHDDLPAMDDDDLRRGLPTCHVKFGEANAILAGDALQTL 120

Query: 143 AVEHMA-TKTKNVSPDRLVRAIGEISSAVGTRGVLAGRIMEINSKGKDVSLSELDFIKRL 201
           A   ++      VS    +  I E++SA G  G+  G+ ++++++GK V L  L+ I R 
Sbjct: 121 AFSILSDADMPEVSDRDRISMISELASASGIAGMCGGQALDLDAEGKHVPLDALERIHRH 180

Query: 202 RCGKLIEASVVCGVLIGGGSEEDIEKL-RKYGKCVGLAYQVWDDILDNMKKKKEAGDDE- 259
           + G LI A+V  G L  G        +  KY + +GLA+QV DDILD +      G  + 
Sbjct: 181 KTGALIRAAVRLGALSAGDKGRRALPVLDKYAESIGLAFQVQDDILDVVGDTATLGKRQG 240

Query: 260 -------ATYPKLMGVAGAKRYAKELVAEANQELAYF--DPTRAAPLYHLADFLVSRHK 309
                  +TYP L+G+  A++ A++L+ +A Q L          + L  LAD+++ R+K
Sbjct: 241 ADQQLGKSTYPALLGLEQARKKARDLIDDARQSLKQLAEQSLDTSALEALADYIIQRNK 299
>d1rtra_ a.128.1.1 (A:) Farnesyl diphosphate synthase (geranyltranstransferase) {Staphylococcus aureus [TaxId: 1280]} Length = 290 Back     information, alignment and structure
>d1v4ea_ a.128.1.1 (A:) Octoprenyl-diphosphate synthase {Thermotoga maritima [TaxId: 2336]} Length = 280 Back     information, alignment and structure
>d2q80a1 a.128.1.1 (A:6-296) Geranylgeranyl pyrophosphate synthetase {Human (Homo sapiens) [TaxId: 9606]} Length = 291 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query309
d1rqja_299 Farnesyl diphosphate synthase (geranyltranstransfe 100.0
d1rtra_290 Farnesyl diphosphate synthase (geranyltranstransfe 100.0
d1fpsa_348 Farnesyl diphosphate synthase (geranyltranstransfe 100.0
d2q80a1291 Geranylgeranyl pyrophosphate synthetase {Human (Ho 100.0
d1v4ea_280 Octoprenyl-diphosphate synthase {Thermotoga mariti 100.0
d1ezfa_333 Squalene synthase {Human (Homo sapiens) [TaxId: 96 93.54
>d1rqja_ a.128.1.1 (A:) Farnesyl diphosphate synthase (geranyltranstransferase) {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
class: All alpha proteins
fold: Terpenoid synthases
superfamily: Terpenoid synthases
family: Isoprenyl diphosphate synthases
domain: Farnesyl diphosphate synthase (geranyltranstransferase)
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=7.4e-48  Score=359.61  Aligned_cols=245  Identities=30%  Similarity=0.473  Sum_probs=220.3

Q ss_pred             hhHHHHHHHHHHHHHHHHhccCCccc----------ccccccCCCCCCcchHHHHHHHHHHHhCCCchhhhhHHHHHHHH
Q 021668           61 IQIDEYMTLKAKKINKALFEGAAVPL----------ILQYPTLPNHEGERVHGTLCIASCELVGGNESSVMPLACAAEML  130 (309)
Q Consensus        61 ~~~~~~l~~~~~~i~~~l~~~~~~~~----------~~~y~l~~~~gGKrlRP~L~ll~~~~~g~~~~~~~~~AaaiEli  130 (309)
                      |++.++++..+.+||+.|.+  .++.          .++|.+.+  ||||+||.|++++++++|++.+.++++|+|+||+
T Consensus         1 m~~~~~~~~~~~~i~~~l~~--~~~~~~~~~~~l~e~~~y~~~~--gGKrlRp~l~~~~~~~~g~~~~~~~~~A~aiEll   76 (299)
T d1rqja_           1 MDFPQQLEACVKQANQALSR--FIAPLPFQNTPVVETMQYGALL--GGKRLRPFLVYATGHMFGVSTNTLDAPAAAVECI   76 (299)
T ss_dssp             CCHHHHHHHHHHHHHHHHHH--HHTTSSSTTSHHHHHHHHHHHS--SCCCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred             CChHHHHHHHHHHHHHHHHH--HHhhcCCCCchHHHHHHHHhhC--CcccHHHHHHHHHHHHcCCcchhHHHHHHHHHHH
Confidence            67889999999999999998  4421          18999988  9999999999999999999999999999999999


Q ss_pred             HHhhH--------------------------------HHHHHHHHHHHHHhcc-CCCChHHHHHHHHHHHHHhccccchh
Q 021668          131 VTLAL--------------------------------NRALLCYAVEHMATKT-KNVSPDRLVRAIGEISSAVGTRGVLA  177 (309)
Q Consensus       131 H~aSL--------------------------------GD~Ll~~Af~~l~~~~-~~~~~~~~~~~~~~la~~~G~~~~~~  177 (309)
                      |+|||                                ||+|++.+|+++++.. ........++++.+++.+.|+.+||+
T Consensus        77 H~asLiHDDI~d~d~~~~RRG~pt~h~~~G~~~AIl~Gd~l~~~a~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~  156 (299)
T d1rqja_          77 HAYSLIHDDLPAMDDDDLRRGLPTCHVKFGEANAILAGDALQTLAFSILSDADMPEVSDRDRISMISELASASGIAGMCG  156 (299)
T ss_dssp             HHHHHHHHTSTTTTCCCEETTEECHHHHHCHHHHHHHHHHHHHHHHHHHHHSCCTTCCHHHHHHHHHHHHHHHSTTTHHH
T ss_pred             HHHHHHHccchhhhhhhcccccccceeeeCcchhhhhcchHHHHHHHHHHhCCCccccHHHHHHHHHHHHHHhhHHHHHH
Confidence            99999                                9999999999999864 23345677888889999988899999


Q ss_pred             hhHHHhhhCCCCCCHHHHHHHHHhchHHHHHHHHHHHHHhc-CCCHHHHHHHHHHHHHHHHHHHHHhchhhhcccchhcC
Q 021668          178 GRIMEINSKGKDVSLSELDFIKRLRCGKLIEASVVCGVLIG-GGSEEDIEKLRKYGKCVGLAYQVWDDILDNMKKKKEAG  256 (309)
Q Consensus       178 GQ~~Dl~~~~~~~s~~~~~~i~~~KTg~Lf~~a~~~Gaila-g~~~~~~~~l~~~G~~lGlAFQI~DDiLD~~~~~~~~G  256 (309)
                      ||.+|+.+.++..+.++|..|+.+|||+||.++|.+|++++ +.+.+..+.+++||.++|+||||+||++|++++++.+|
T Consensus       157 GQ~ldl~~~~~~~~~~~~~~i~~~KT~~l~~~~~~~~a~~~~~~~~~~~~~l~~~g~~lGiaFQi~DD~lD~~~~~~~~G  236 (299)
T d1rqja_         157 GQALDLDAEGKHVPLDALERIHRHKTGALIRAAVRLGALSAGDKGRRALPVLDKYAESIGLAFQVQDDILDVVGDTATLG  236 (299)
T ss_dssp             HHHHHHHTTTTCCCHHHHHHHHHHHTHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHS
T ss_pred             HHHHHHHhccCcccHHHHHHHHHHHHhhHHHHHHHhhhhhhcchhhHHHHHHHHHHHHHHHHHHHHHHHHhhccchhhcC
Confidence            99999998877788999999999999999999999988765 45566778999999999999999999999999998888


Q ss_pred             --------CCCchhhhhhhHHHHHHHHHHHHHHHHHHhccCC--CCCHHHHHHHHHHHHhccC
Q 021668          257 --------DDEATYPKLMGVAGAKRYAKELVAEANQELAYFD--PTRAAPLYHLADFLVSRHK  309 (309)
Q Consensus       257 --------~gK~T~p~l~gle~A~~~a~~~~~~A~~~L~~l~--~~~~~~L~~l~~~l~~R~~  309 (309)
                              +||.|+|++++++++++.++++.+++++.|+.++  +..++.|.++++|+++|+|
T Consensus       237 K~~g~Dl~egK~Tlp~i~~le~a~~~~~~~~~~~~~~l~~l~~~~~~~~~L~~l~~~i~~R~K  299 (299)
T d1rqja_         237 KRQGADQQLGKSTYPALLGLEQARKKARDLIDDARQSLKQLAEQSLDTSALEALADYIIQRNK  299 (299)
T ss_dssp             SCTTHHHHHTCCCHHHHHCHHHHHHHHHHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHHHCCC
T ss_pred             CchhhHHHCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccHHHHHHHHHHHHhCCC
Confidence                    7999999999999999999999999999999883  3467899999999999986
>d1rtra_ a.128.1.1 (A:) Farnesyl diphosphate synthase (geranyltranstransferase) {Staphylococcus aureus [TaxId: 1280]} Back     information, alignment and structure
>d1fpsa_ a.128.1.1 (A:) Farnesyl diphosphate synthase (geranyltranstransferase) {Chicken (Gallus gallus) [TaxId: 9031]} Back     information, alignment and structure
>d2q80a1 a.128.1.1 (A:6-296) Geranylgeranyl pyrophosphate synthetase {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1v4ea_ a.128.1.1 (A:) Octoprenyl-diphosphate synthase {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d1ezfa_ a.128.1.2 (A:) Squalene synthase {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure