Citrus Sinensis ID: 021727

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------31
Protein Sequence
MQQLLFTVMFSEMALIMVLLFKTPLRKLLIMSLDRVKRGRGPVVVKTVAGTVLVMLISSVYNIMMIQKRWIDDEGAVVNPTDQVLLANHLLEATLMGASLFLAFMIDRLHHYIRELRIRRKTMEAIKNQSRGFEDGKAASSEEIKALEDQMTTLKLKLKDLESELETKSKEANAAETNAVALRKQSEGFLFEYDRLLEENQNLRNQLQSLDWRLSHSDFRTVYWNAEKTASSTYCAAKVLDFELLTKLSMGSSSCKSLLVLAAVSSIKRRKVRTDSDDNTSIIAGATRPFPSSAYSTEARVRNVDVNE
Secondary Structure (PSIPRED)
cHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHcccccEEHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccHHHHHHccccccc
Secondary Structure Prediction (SSPRO)
cHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHcccccEEccccEEEEEEEEEEEccccHHHHHHHHHHHHHHHHcccEcccccccEEEEccccccccccccEEEEEEEccccc
Coil and Loop (DISEMBL)
MQQLLFTVMFSEMALIMVLLFKTPLRKLLIMSLdrvkrgrgpvVVKTVAGTVLVMLISSVYNIMMIQKRwiddegavvnptDQVLLANHLLEATLMGASLFLAFMIDRLHHYIRELRIRRKTMEAIKNqsrgfedgkaaSSEEIKALEDQMTTLKLKLKDLESELETKSKEANAAETNAVALRKQSEGFLFEYDRLLEENQNLRNQLQSLDWRLSHSDFRTVYWNAEKTASSTYCAAKVLDFELLTklsmgsssCKSLLVLAAVSSIkrrkvrtdsddntsiiagatrpfpssaystearvrnvdvne
Flexible Loop (DISEMBL)
MQQLLFTVMFSEMALIMVLLFKTPLRKLLIMsldrvkrgrgpvvvktvagTVLVMLISSVYNIMMIQKRWIDDEGAVVNPTDQVLLANHLLEATLMGASLFLAFMIDRLHHYIRELRIRRKTMEaiknqsrgfedgkaasSEEIKALEDQMTTLKLKLKDLESELETkskeanaaetnavALRKQSEGFLFEYDRLLEENQNLRNQLQSLDWRLSHSDFRTVYWNAEKTASSTYCAAKVLDFELLTKLSMGSSSCKSLLVLAAvssikrrkvrtdsddntsiiagatrpfpssaystearvrnvdvne
Low Complexity Region (SEG)
MQQLLFTVMFSEMALIMVLLFKTPLRKLLIMSLDrvkrgrgpvvvktvagtvlvMLISSVYNIMMIQKRWIDDEGAVVNPTDQVLLANHLLEATLMGASLFLAFMIDRLHHYIRELRIRRKTMEAIKNQSRGFEDGKAASSEEIKALEDQMttlklklkdleseletkskeANAAETNAVALRKQSEGFLFEYDrlleenqnlrnqlqSLDWRLSHSDFRTVYWNAEKTASSTYCAAKVLDFELLTKLSMGSSSCKSLLVLAAVSSIKRRKVRTDSDDNTSIIAGATRPFPSSAYSTEARVRNVDVNE
Disordered region (IsUnstruct)
***LLFTVMFSEMALIMVLLFKTPLRKLLIMSLDRVKRGRGPVVVKTVAGTVLVMLISSVYNIMMIQKRWIDDEGAVVNPTDQVLLANHLLEATLMGASLFLAFMIDRLHHYIRELRIRRK*****************************************************************EGFLFEYDRLLEENQNLRNQLQSLDWRLSHSDFRTVYWNAEKTASSTYCAAKVLDFELLTKLSMGSSSCKSLLVLAAVSSI*****************************************
Disordered Region (DISOPRED)
MQQLLFTVMFSEMALIMVLLFKTPLRKLLIMSLDRVKRGRGPVVVKTVAGTVLVMLISSVYNIMM*******************LLANHLLEATLMGASLFLAFMIDRLHHYIRELRI****************************************************************************RLLEE**************************************************************************************ATRPFPS**YSTEA**RNV****
Disordered Region (DISEMBL)
MQQLLFTVMFSEMALIMVLLFKTPLRKLLIMSLDRVKRGRGPVVVKTVAGTVLVMLISSVYNIMMIQKRWIDDEGAVVNPTDQVLLANHLLEATLMGASLFLAFMIDRLHHYIRELRIRRKTMEAIKNQSRGFEDGKAASSEEIKALEDQMTTLKLKLKDLESELETKSKEANAAETNAVALRKQSEGFLFEYDRLLEENQNLRNQLQSLDWRLSHSDFRTVYWNAEKTASSTYCAAKVLDFELLTKLSMGSSSCKSLLVLAAVSSI*********DDNTSIIAGATRPFPSSAYSTEARVRNVDVNE
Disordered Region (DISPRO)
MQQLLFTVMFSEMALIMVLLFKTPLRKLLIMSLDRVKRGRGPVVVKTVAGTVLVMLISSVYNIMMIQKRWIDDEGAVVNPTDQVLLANHLLEATLMGASLFLAFMIDRLHHYIRELRIRRKTMEAIKNQSRGFEDGKAASSEEIKALEDQMTTLKLKLKDLESELETKSKEANAAETNAVALRKQSEGFLFEYDRLLEENQNLRNQLQSLDWRLSHSDFRTVYWNAEKTASSTYCAAKVLDFELLTKLSMGSSSCKSLLVLAAVSSIKRRKVRTDSDDNTSIIAGATRPFPSSAYSTEARVRNVD***
Transmembrane Helix (TMHMM)
oooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
oooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
ooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MQQLLFTVMFSEMALIMVLLFKTPLRKLLIMSLDRVKRGRGPVVVKTVAGTVLVMLISSVYNIMMIQKRWIDDEGAVVNPTDQVLLANHLLEATLMGASLFLAFMIDRLHHYIRELRIRRKTMEAIKNQSRGFEDGxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxSEGFLFExxxxxxxxxxxxxxxxxxxxxLSHSDFRTVYWNAEKTASSTYCAAKVLDFELLTKLSMGSSSCKSLLVLAAVSSIKRRKVRTDSDDNTSIIAGATRPFPSSAYSTEARVRNVDVNE
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	308	2.2.26 [Sep-21-2011]
Q5R8H3	246	B-cell receptor-associate	yes	no	0.198	0.247	0.451	7e-05
P51572	246	B-cell receptor-associate	no	no	0.198	0.247	0.451	7e-05
Q61335	245	B-cell receptor-associate	yes	no	0.181	0.228	0.446	0.0005

>sp|Q5R8H3|BAP31_PONAB B-cell receptor-associated protein 31 OS=Pongo abelii GN=BCAP31 PE=2 SV=3

 Score = 48.5 bits (114), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 28/62 (45%), Positives = 41/62 (66%), Gaps = 1/62 (1%)

Query: 143 EIKALEDQMTTLKLKLKDLESELETKSKEANAAETNAVALRKQSEGFLFEYDRLLEENQN 202
           E+K LE++  +LK  L+ L+ EL +  ++   AE   +A+RKQSEG   EYDRLLEE+  
Sbjct: 174 EVK-LEEENRSLKADLQKLKDELASTKQKLEKAENQVLAMRKQSEGLTKEYDRLLEEHAK 232

Query: 203 LR 204
           L+
Sbjct: 233 LQ 234

May play a role in anterograde transport of membrane proteins from the endoplasmic reticulum to the Golgi. May be involved in CASP8-mediated apoptosis.
Pongo abelii (taxid: 9601)

>sp|P51572|BAP31_HUMAN B-cell receptor-associated protein 31 OS=Homo sapiens GN=BCAP31 PE=1 SV=3

 Score = 48.5 bits (114), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 28/62 (45%), Positives = 41/62 (66%), Gaps = 1/62 (1%)

Query: 143 EIKALEDQMTTLKLKLKDLESELETKSKEANAAETNAVALRKQSEGFLFEYDRLLEENQN 202
           E+K LE++  +LK  L+ L+ EL +  ++   AE   +A+RKQSEG   EYDRLLEE+  
Sbjct: 174 EVK-LEEENRSLKADLQKLKDELASTKQKLEKAENQVLAMRKQSEGLTKEYDRLLEEHAK 232

Query: 203 LR 204
           L+
Sbjct: 233 LQ 234

May play a role in anterograde transport of membrane proteins from the endoplasmic reticulum to the Golgi. May be involved in CASP8-mediated apoptosis.

Homo sapiens (taxid: 9606)

>sp|Q61335|BAP31_MOUSE B-cell receptor-associated protein 31 OS=Mus musculus GN=Bcap31 PE=1 SV=4

 Score = 45.4 bits (106), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 25/56 (44%), Positives = 37/56 (66%)

Query: 149 DQMTTLKLKLKDLESELETKSKEANAAETNAVALRKQSEGFLFEYDRLLEENQNLR 204
           ++  +LK  L+ L+ EL +  K+   AE  A+A++KQSEG   EYDRLLEE+  L+
Sbjct: 178 EENKSLKNDLRKLKDELASTKKKLEKAENEALAMQKQSEGLTKEYDRLLEEHAKLQ 233

May play a role in anterograde transport of membrane proteins from the endoplasmic reticulum to the Golgi. May be involved in CASP8-mediated apoptosis.

Mus musculus (taxid: 10090)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	308
225444283	221	PREDICTED: uncharacterized protein LOC10	0.698	0.972	0.788	4e-94
255554819	218	bcr-associated protein, bap, putative [R	0.688	0.972	0.760	5e-88
118487230	219	unknown [Populus trichocarpa]	0.691	0.972	0.760	6e-88
255628483	225	unknown [Glycine max]	0.717	0.982	0.734	1e-87
356532066	222	PREDICTED: uncharacterized protein LOC10	0.701	0.972	0.741	1e-87
351724959	222	uncharacterized protein LOC100526943 [Gl	0.701	0.972	0.732	5e-86
388518573	222	unknown [Lotus japonicus]	0.701	0.972	0.718	5e-85
449433978	221	PREDICTED: uncharacterized protein LOC10	0.698	0.972	0.709	8e-84
224117940	219	predicted protein [Populus trichocarpa]	0.691	0.972	0.718	2e-83
224113707	207	predicted protein [Populus trichocarpa]	0.652	0.971	0.756	3e-82

>gi|225444283|ref|XP_002262807.1| PREDICTED: uncharacterized protein LOC100265893 [Vitis vinifera] gi|302144107|emb|CBI23212.3| unnamed protein product [Vitis vinifera]

 Score =  350 bits (899), Expect = 4e-94,   Method: Compositional matrix adjust.
 Identities = 171/217 (78%), Positives = 193/217 (88%), Gaps = 2/217 (0%)

Query: 1   MQQLLFTVMFSEMALIMVLLFKTPLRKLLIMSLDRVKRGRGPVVVKTVAGTVLVMLISSV 60
           M QLLFTV+F+EMA+IMVLLFKTPLRKL+IM LDRVKRGRGP++VKTVA TVLV+LISSV
Sbjct: 1   MIQLLFTVIFAEMAMIMVLLFKTPLRKLVIMGLDRVKRGRGPIMVKTVAATVLVVLISSV 60

Query: 61  YNIMMIQKRWIDDEGAVVNPTDQVLLANHLLEATLMGASLFLAFMIDRLHHYIRELRIRR 120
           Y++M I+KR IDD+  VVNPTDQVL+A HLLE +LMG +LFLA MIDRLHHYIRELR+RR
Sbjct: 61  YSMMKIRKRGIDDD--VVNPTDQVLMAKHLLETSLMGFTLFLALMIDRLHHYIRELRLRR 118

Query: 121 KTMEAIKNQSRGFEDGKAASSEEIKALEDQMTTLKLKLKDLESELETKSKEANAAETNAV 180
           K+MEAIK Q+RGFEDGK   S EIKA+E++M  L  KLK LESE+ETK+KEA AAETNAV
Sbjct: 119 KSMEAIKKQNRGFEDGKTGGSAEIKAMEEEMAALGAKLKQLESEIETKTKEAKAAETNAV 178

Query: 181 ALRKQSEGFLFEYDRLLEENQNLRNQLQSLDWRLSHS 217
           ALRKQSEGFL EYDRLLEENQNLRNQLQSLD RLSHS
Sbjct: 179 ALRKQSEGFLLEYDRLLEENQNLRNQLQSLDRRLSHS 215

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255554819|ref|XP_002518447.1| bcr-associated protein, bap, putative [Ricinus communis] gi|223542292|gb|EEF43834.1| bcr-associated protein, bap, putative [Ricinus communis]

 Score =  330 bits (846), Expect = 5e-88,   Method: Compositional matrix adjust.
 Identities = 165/217 (76%), Positives = 189/217 (87%), Gaps = 5/217 (2%)

Query: 1   MQQLLFTVMFSEMALIMVLLFKTPLRKLLIMSLDRVKRGRGPVVVKTVAGTVLVMLISSV 60
           M QLLFT +FSEMALI++L+FKTP RKL++M LDRVKRG GP++VKTVAGT+LV+LISSV
Sbjct: 1   MIQLLFTGIFSEMALILILVFKTPFRKLVLMGLDRVKRGSGPIIVKTVAGTILVVLISSV 60

Query: 61  YNIMMIQKRWIDDEGAVVNPTDQVLLANHLLEATLMGASLFLAFMIDRLHHYIRELRIRR 120
           Y++M IQKR ID+    VNPTDQVL+A HLLEATLMGA LFLA MIDRLHHYIRELR+RR
Sbjct: 61  YSMMKIQKRGIDE--GFVNPTDQVLMAKHLLEATLMGAMLFLALMIDRLHHYIRELRMRR 118

Query: 121 KTMEAIKNQSRGFEDGKAASSEEIKALEDQMTTLKLKLKDLESELETKSKEANAAETNAV 180
           K+MEA+K QSR  EDGKA   EE KAL ++MTTL+ +LK LESELE K+KEA+A+ETNAV
Sbjct: 119 KSMEAVKKQSRVAEDGKA---EENKALGEEMTTLRARLKQLESELEVKTKEAHASETNAV 175

Query: 181 ALRKQSEGFLFEYDRLLEENQNLRNQLQSLDWRLSHS 217
           ALRKQSEGFL EYDRLLEENQNLRNQLQSLD RLS S
Sbjct: 176 ALRKQSEGFLLEYDRLLEENQNLRNQLQSLDLRLSRS 212

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|118487230|gb|ABK95443.1| unknown [Populus trichocarpa]

 Score =  330 bits (845), Expect = 6e-88,   Method: Compositional matrix adjust.
 Identities = 165/217 (76%), Positives = 186/217 (85%), Gaps = 4/217 (1%)

Query: 1   MQQLLFTVMFSEMALIMVLLFKTPLRKLLIMSLDRVKRGRGPVVVKTVAGTVLVMLISSV 60
           M QLLFTV+FSEMA+I++ +FKTPLRKLLIMSLDRVKRGRGPV+VKTVAGTV V+L+SSV
Sbjct: 1   MIQLLFTVIFSEMAMILLFVFKTPLRKLLIMSLDRVKRGRGPVMVKTVAGTVFVVLMSSV 60

Query: 61  YNIMMIQKRWIDDEGAVVNPTDQVLLANHLLEATLMGASLFLAFMIDRLHHYIRELRIRR 120
           Y+++ IQKRWIDD GA VNPTDQVLLA HLLEATLMG+ LFL  MIDRLHHYIRELR+RR
Sbjct: 61  YSMVKIQKRWIDDGGA-VNPTDQVLLAKHLLEATLMGSILFLGLMIDRLHHYIRELRMRR 119

Query: 121 KTMEAIKNQSRGFEDGKAASSEEIKALEDQMTTLKLKLKDLESELETKSKEANAAETNAV 180
           KTME +K Q+R FEDGK    EE KALE + +TL+ KLK LESELE K+KE N +E NAV
Sbjct: 120 KTMEDVKKQNRSFEDGKV---EETKALEAEASTLREKLKQLESELEIKTKEVNTSEANAV 176

Query: 181 ALRKQSEGFLFEYDRLLEENQNLRNQLQSLDWRLSHS 217
           AL KQSEGFL EYDRLLEENQNLR+QLQSLD R S S
Sbjct: 177 ALSKQSEGFLLEYDRLLEENQNLRSQLQSLDLRFSRS 213

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255628483|gb|ACU14586.1| unknown [Glycine max]

 Score =  329 bits (843), Expect = 1e-87,   Method: Compositional matrix adjust.
 Identities = 163/222 (73%), Positives = 191/222 (86%), Gaps = 1/222 (0%)

Query: 1   MQQLLFTVMFSEMALIMVLLFKTPLRKLLIMSLDRVKRGRGPVVVKTVAGTVLVMLISSV 60
           M QLLFTV+FSE A+I +LLFKTPLRKL+IM LDR+KRGRGP++VKTVAGTVLV+  SSV
Sbjct: 1   MIQLLFTVIFSETAMIALLLFKTPLRKLVIMGLDRLKRGRGPLMVKTVAGTVLVVFFSSV 60

Query: 61  YNIMMIQKRWIDDEGAVVNPTDQVLLANHLLEATLMGASLFLAFMIDRLHHYIRELRIRR 120
           Y+++ IQKR I+ EGAVVNPTDQVL+A HLLEATLMGA LFLA MIDRLHHYIRELRIRR
Sbjct: 61  YSMVNIQKRGIE-EGAVVNPTDQVLMAKHLLEATLMGAILFLALMIDRLHHYIRELRIRR 119

Query: 121 KTMEAIKNQSRGFEDGKAASSEEIKALEDQMTTLKLKLKDLESELETKSKEANAAETNAV 180
           K MEA+K Q+RG EDGK A+SEEIKA+E++   L+ +L  LESEL++K+K+ +AAE N  
Sbjct: 120 KGMEAVKKQTRGTEDGKVANSEEIKAVEEERARLRAELSRLESELQSKTKDVDAAEANVA 179

Query: 181 ALRKQSEGFLFEYDRLLEENQNLRNQLQSLDWRLSHSDFRTV 222
           ALRKQSEGFL EYDRLLEENQNLRNQLQSLD +LSHS  R +
Sbjct: 180 ALRKQSEGFLLEYDRLLEENQNLRNQLQSLDRKLSHSVPRRI 221

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356532066|ref|XP_003534595.1| PREDICTED: uncharacterized protein LOC100500010 [Glycine max]

 Score =  328 bits (842), Expect = 1e-87,   Method: Compositional matrix adjust.
 Identities = 161/217 (74%), Positives = 189/217 (87%), Gaps = 1/217 (0%)

Query: 1   MQQLLFTVMFSEMALIMVLLFKTPLRKLLIMSLDRVKRGRGPVVVKTVAGTVLVMLISSV 60
           M QLLFTV+FSE A+I +LLFKTPLRKL+IM LDR+KRGRGP++VKTVAGTVLV+  SSV
Sbjct: 1   MIQLLFTVIFSETAMIALLLFKTPLRKLVIMGLDRLKRGRGPLMVKTVAGTVLVVFFSSV 60

Query: 61  YNIMMIQKRWIDDEGAVVNPTDQVLLANHLLEATLMGASLFLAFMIDRLHHYIRELRIRR 120
           Y+++ IQKR I+ EGA+VNPTDQVL+A HLLEATLMGA LFLA MIDRLHHYIRELRIRR
Sbjct: 61  YSMVNIQKRGIE-EGAIVNPTDQVLMAKHLLEATLMGAILFLALMIDRLHHYIRELRIRR 119

Query: 121 KTMEAIKNQSRGFEDGKAASSEEIKALEDQMTTLKLKLKDLESELETKSKEANAAETNAV 180
           K MEA+K Q+RG EDGK A+SEEIKA+E++   L+ +L  LESEL++K+K+ +AAE N  
Sbjct: 120 KGMEAVKKQTRGTEDGKVANSEEIKAVEEERARLRAELSRLESELQSKTKDVDAAEANVA 179

Query: 181 ALRKQSEGFLFEYDRLLEENQNLRNQLQSLDWRLSHS 217
           ALRKQSEGFL EYDRLLEENQNLRNQLQSLD +LSHS
Sbjct: 180 ALRKQSEGFLLEYDRLLEENQNLRNQLQSLDRKLSHS 216

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|351724959|ref|NP_001236308.1| uncharacterized protein LOC100526943 [Glycine max] gi|255631201|gb|ACU15966.1| unknown [Glycine max]

 Score =  323 bits (829), Expect = 5e-86,   Method: Compositional matrix adjust.
 Identities = 159/217 (73%), Positives = 188/217 (86%), Gaps = 1/217 (0%)

Query: 1   MQQLLFTVMFSEMALIMVLLFKTPLRKLLIMSLDRVKRGRGPVVVKTVAGTVLVMLISSV 60
           M QLLFTV+FSE ++I +LLFKTPLRKL+IM LDR+KRGRGP++VKTVAGTVLV+L+SSV
Sbjct: 1   MIQLLFTVIFSEASMIALLLFKTPLRKLVIMGLDRLKRGRGPLMVKTVAGTVLVVLLSSV 60

Query: 61  YNIMMIQKRWIDDEGAVVNPTDQVLLANHLLEATLMGASLFLAFMIDRLHHYIRELRIRR 120
           Y+++ IQKR I  EGAVVNPTDQVL+A HLLEATLM A LFLA MIDRLHHYIRELRIRR
Sbjct: 61  YSMLKIQKRGIQ-EGAVVNPTDQVLMAKHLLEATLMVAVLFLALMIDRLHHYIRELRIRR 119

Query: 121 KTMEAIKNQSRGFEDGKAASSEEIKALEDQMTTLKLKLKDLESELETKSKEANAAETNAV 180
           K MEA+K Q+RG EDGK A+SEEIK++E++   L+ +L  LESEL++K+K+ + AE N  
Sbjct: 120 KGMEAVKKQTRGTEDGKVANSEEIKSVEEERARLRAELSRLESELQSKTKDVDGAEANIA 179

Query: 181 ALRKQSEGFLFEYDRLLEENQNLRNQLQSLDWRLSHS 217
           ALRKQSEGFL EYDRLLEENQNLRNQLQSLD +LSHS
Sbjct: 180 ALRKQSEGFLLEYDRLLEENQNLRNQLQSLDRKLSHS 216

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388518573|gb|AFK47348.1| unknown [Lotus japonicus]

 Score =  320 bits (820), Expect = 5e-85,   Method: Compositional matrix adjust.
 Identities = 156/217 (71%), Positives = 186/217 (85%), Gaps = 1/217 (0%)

Query: 1   MQQLLFTVMFSEMALIMVLLFKTPLRKLLIMSLDRVKRGRGPVVVKTVAGTVLVMLISSV 60
           M  LLFTV+FSE A+I +LLFKTPLRKL+IM LDR+KRGRGP++V+TV  TVLV+L+SS+
Sbjct: 1   MIHLLFTVIFSEAAMIALLLFKTPLRKLMIMGLDRLKRGRGPLMVRTVGATVLVVLLSSL 60

Query: 61  YNIMMIQKRWIDDEGAVVNPTDQVLLANHLLEATLMGASLFLAFMIDRLHHYIRELRIRR 120
           Y++  IQKR I+D G VVNPTDQVL+A HLLEATLMGA LFLA MIDRLHHYIRELR+RR
Sbjct: 61  YSMFNIQKRGIED-GGVVNPTDQVLMAKHLLEATLMGAVLFLALMIDRLHHYIRELRVRR 119

Query: 121 KTMEAIKNQSRGFEDGKAASSEEIKALEDQMTTLKLKLKDLESELETKSKEANAAETNAV 180
           KTMEA+K QSRG +DGKAA SEEI+A+E++ T L+ ++  LESEL++K+KE + AE N  
Sbjct: 120 KTMEAVKKQSRGSDDGKAAHSEEIRAMEEETTKLRAEINRLESELKSKTKEVDGAEANVS 179

Query: 181 ALRKQSEGFLFEYDRLLEENQNLRNQLQSLDWRLSHS 217
           ALRKQSEGFL EYDRLLEENQNLRN+LQS D RLSHS
Sbjct: 180 ALRKQSEGFLLEYDRLLEENQNLRNELQSWDRRLSHS 216

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449433978|ref|XP_004134773.1| PREDICTED: uncharacterized protein LOC101221743 [Cucumis sativus] gi|449526061|ref|XP_004170033.1| PREDICTED: uncharacterized protein LOC101228301 [Cucumis sativus]

 Score =  316 bits (810), Expect = 8e-84,   Method: Compositional matrix adjust.
 Identities = 154/217 (70%), Positives = 185/217 (85%), Gaps = 2/217 (0%)

Query: 1   MQQLLFTVMFSEMALIMVLLFKTPLRKLLIMSLDRVKRGRGPVVVKTVAGTVLVMLISSV 60
           M QLLFTV+ SEM LI++  FKTPLRKL+I+++DR+KRGRGP++VKTVAGTVL++L+SSV
Sbjct: 1   MIQLLFTVIISEMVLILLFSFKTPLRKLVILAVDRMKRGRGPIMVKTVAGTVLIVLLSSV 60

Query: 61  YNIMMIQKRWIDDEGAVVNPTDQVLLANHLLEATLMGASLFLAFMIDRLHHYIRELRIRR 120
           Y+++ IQKRWIDD GA+ NPTDQVL+  HLLEATLMG SLFLA MIDRLHHY+RELR+RR
Sbjct: 61  YSMVTIQKRWIDD-GAI-NPTDQVLMVKHLLEATLMGGSLFLALMIDRLHHYMRELRLRR 118

Query: 121 KTMEAIKNQSRGFEDGKAASSEEIKALEDQMTTLKLKLKDLESELETKSKEANAAETNAV 180
           K MEAIK QSR  EDGK + SEEIKALE++ TTL+ KLK LES L++K+K+   +E N V
Sbjct: 119 KGMEAIKKQSRAVEDGKVSKSEEIKALEEERTTLETKLKQLESVLDSKTKDITTSEANVV 178

Query: 181 ALRKQSEGFLFEYDRLLEENQNLRNQLQSLDWRLSHS 217
           ALRKQSEG L EYDRLLEENQNLR QLQS++ RLS S
Sbjct: 179 ALRKQSEGLLLEYDRLLEENQNLRGQLQSVERRLSRS 215

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224117940|ref|XP_002331516.1| predicted protein [Populus trichocarpa] gi|222873740|gb|EEF10871.1| predicted protein [Populus trichocarpa]

 Score =  315 bits (807), Expect = 2e-83,   Method: Compositional matrix adjust.
 Identities = 156/217 (71%), Positives = 184/217 (84%), Gaps = 4/217 (1%)

Query: 1   MQQLLFTVMFSEMALIMVLLFKTPLRKLLIMSLDRVKRGRGPVVVKTVAGTVLVMLISSV 60
           M QLLF V+FSEMA+I++ +FK+PLRK LIMSLDR+KRGRGPV+VKTVAGTV ++LISSV
Sbjct: 1   MIQLLFAVIFSEMAMILLFVFKSPLRKFLIMSLDRLKRGRGPVMVKTVAGTVFLVLISSV 60

Query: 61  YNIMMIQKRWIDDEGAVVNPTDQVLLANHLLEATLMGASLFLAFMIDRLHHYIRELRIRR 120
           Y+++ IQKR ID  G VVNPTDQVL+A HLLEATLMG+ LFL+ MIDRLHHYIRELR+RR
Sbjct: 61  YSMVKIQKRGIDV-GGVVNPTDQVLMAKHLLEATLMGSILFLSLMIDRLHHYIRELRMRR 119

Query: 121 KTMEAIKNQSRGFEDGKAASSEEIKALEDQMTTLKLKLKDLESELETKSKEANAAETNAV 180
           K+MEA+K Q+R FEDGK    EE KALE +++TL+ KLK L+SELE KSKE N +E NA 
Sbjct: 120 KSMEAVKKQNRSFEDGKV---EETKALETEVSTLQEKLKQLQSELEVKSKEVNTSEANAA 176

Query: 181 ALRKQSEGFLFEYDRLLEENQNLRNQLQSLDWRLSHS 217
           AL KQSEGFL EYDRLLEENQNLR+QLQS+D  LS S
Sbjct: 177 ALSKQSEGFLLEYDRLLEENQNLRSQLQSMDLGLSRS 213

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224113707|ref|XP_002316548.1| predicted protein [Populus trichocarpa] gi|222859613|gb|EEE97160.1| predicted protein [Populus trichocarpa]

 Score =  311 bits (796), Expect = 3e-82,   Method: Compositional matrix adjust.
 Identities = 155/205 (75%), Positives = 175/205 (85%), Gaps = 4/205 (1%)

Query: 13  MALIMVLLFKTPLRKLLIMSLDRVKRGRGPVVVKTVAGTVLVMLISSVYNIMMIQKRWID 72
           MA+I++ +FKTPLRKLLIMSLDRVKRGRGPV+VKTVAGTV V+L+SSVY+++ IQKRWID
Sbjct: 1   MAMILLFVFKTPLRKLLIMSLDRVKRGRGPVMVKTVAGTVFVVLMSSVYSMVKIQKRWID 60

Query: 73  DEGAVVNPTDQVLLANHLLEATLMGASLFLAFMIDRLHHYIRELRIRRKTMEAIKNQSRG 132
           D GAV NPTDQVLLA HLLEATLMG+ LFL  MIDRLHHYIRELR+RRKTME +K Q+R 
Sbjct: 61  DGGAV-NPTDQVLLAKHLLEATLMGSILFLGLMIDRLHHYIRELRMRRKTMEDVKKQNRS 119

Query: 133 FEDGKAASSEEIKALEDQMTTLKLKLKDLESELETKSKEANAAETNAVALRKQSEGFLFE 192
           FEDGK    EE KALE + +TL+ KLK LESELE K+KE N +E NAVAL KQSEGFL E
Sbjct: 120 FEDGKV---EETKALEAEASTLREKLKQLESELEIKTKEVNTSEANAVALSKQSEGFLLE 176

Query: 193 YDRLLEENQNLRNQLQSLDWRLSHS 217
           YDRLLEENQNLR+QLQSLD R S S
Sbjct: 177 YDRLLEENQNLRSQLQSLDLRFSRS 201

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	308
TAIR|locus:2152691	218	AT5G42570 "AT5G42570" [Arabido	0.623	0.880	0.494	3.1e-44
TAIR|locus:1005716776	221	AT1G11905 "AT1G11905" [Arabido	0.698	0.972	0.456	1.5e-42
TAIR|locus:2152501	219	AT5G48660 "AT5G48660" [Arabido	0.623	0.876	0.336	1.3e-22
TAIR|locus:2098520	220	AT3G07190 "AT3G07190" [Arabido	0.623	0.872	0.326	3e-21
TAIR|locus:2092364	137	AT3G20450 "AT3G20450" [Arabido	0.425	0.956	0.398	1.2e-19

TAIR|locus:2152691 AT5G42570 "AT5G42570" [Arabidopsis thaliana (taxid:3702)]

 Score = 466 (169.1 bits), Expect = 3.1e-44, P = 3.1e-44
 Identities = 96/194 (49%), Positives = 126/194 (64%)

Query:     1 MQQLLFTVMFSEMALIMVLLFKTPLRKLLIMSLDXXXXXXXXXXXXXXXXXXXXMLISSV 60
             M  LL+TV+F+EMALI++LLFKTPLRKL+I++ D                    +L+SS+
Sbjct:     1 MIHLLYTVIFAEMALILLLLFKTPLRKLIILTFDRIKRGRGPVVVKTIGTTVFVVLLSSI 60

Query:    61 YNIMMIQKRWIDDEGAVVNPTDQVLLANHLLEATLMGASLFLAFMIDRLHHYIRELRIRR 120
             Y+++ IQ+R   ++GAV+NPTDQVL + HLLEA+LMG  LFL+ MIDRLHHYIRELR+ R
Sbjct:    61 YSLVNIQRR--SEDGAVLNPTDQVLASKHLLEASLMGFVLFLSLMIDRLHHYIRELRLLR 118

Query:   121 KTMEAIKNQSRGFEDGKAASSEEIKALEDQMXXXXXXXXXXXXXXXXXXXXANAAETNAV 180
             KTME  K Q+RGFEDGK  S EE+KAL +++                       A+    
Sbjct:   119 KTMETAKKQNRGFEDGKTTSGEEVKALGEEIAALKAKIKTLESESESKGKELKGAQGETE 178

Query:   181 ALRKQSEGFLFEYD 194
             ALRKQ++GFL EYD
Sbjct:   179 ALRKQADGFLMEYD 192

GO:0003674 "molecular_function" evidence=ND

GO:0005783 "endoplasmic reticulum" evidence=IEA;IDA

GO:0006886 "intracellular protein transport" evidence=IEA

GO:0009507 "chloroplast" evidence=ISM

GO:0016021 "integral to membrane" evidence=IEA

GO:0005774 "vacuolar membrane" evidence=IDA

GO:0009506 "plasmodesma" evidence=IDA

TAIR|locus:1005716776 AT1G11905 "AT1G11905" [Arabidopsis thaliana (taxid:3702)]

 Score = 450 (163.5 bits), Expect = 1.5e-42, P = 1.5e-42
 Identities = 99/217 (45%), Positives = 127/217 (58%)

Query:     1 MQQLLFTVMFSEMALIMVLLFKTPLRKLLIMSLDXXXXXXXXXXXXXXXXXXXXMLISSV 60
             MQQLLF V+  E+ +IM L FKTP+RKLLIMSLD                    +L++SV
Sbjct:     1 MQQLLFAVVLFEVVVIMALSFKTPIRKLLIMSLDRSKRGRGPVVIQTVSATVIVLLVTSV 60

Query:    61 YNIMMIQKRWIDDEGAVVNPTDQVLLANHLLEATLMGASLFLAFMIDRLHHYIRELRIRR 120
             YN+M IQKRWI+D   VVNPTD+V++A HLLE+TLMG  LFL  MIDRLHHY+RELRIRR
Sbjct:    61 YNMMGIQKRWIED--GVVNPTDEVIMAKHLLESTLMGGFLFLGLMIDRLHHYMRELRIRR 118

Query:   121 KTMEAIKNQSRGFEDGKAASSEEIKALEDQMXXXXXXXXXXXXXXXXXXXXANAAETNAV 180
             K ME IK +    E  KA   +E+K L +++                        +T+AV
Sbjct:   119 KNMEVIKKEGALLEGVKARGLDEVKNLMEEITSLRKRQEQLDSELEARSKEIRTEKTSAV 178

Query:   181 ALRKQSEGFLFEYDXXXXXXXXXXXXXXSLDWRLSHS 217
             AL+KQSEGFL E++              ++D +LS S
Sbjct:   179 ALQKQSEGFLIEFNRLLEENQVLRDQLHTVDSKLSRS 215

GO:0003674 "molecular_function" evidence=ND

GO:0005737 "cytoplasm" evidence=ISM

GO:0005783 "endoplasmic reticulum" evidence=IEA;IDA

GO:0006886 "intracellular protein transport" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

TAIR|locus:2152501 AT5G48660 "AT5G48660" [Arabidopsis thaliana (taxid:3702)]

 Score = 262 (97.3 bits), Expect = 1.3e-22, P = 1.3e-22
 Identities = 68/202 (33%), Positives = 105/202 (51%)

Query:     1 MQQLLFTVMFSEMALIMVLLFKT-PLRKLLIMSLDXXXXXXXXXXXXXXXXXXXXMLISS 59
             M QLLF V+F E A+  +LL K  PLR+L+I SLD                    +L S+
Sbjct:     1 MIQLLFLVLFVEGAIAFLLLIKIGPLRELVIKSLDQMKMGKGPATVKTIAGTMSVILFSN 60

Query:    60 VYNIMMIQKRWIDDEGAVVNPTDQVLLANHLLEATLMGASLFLAFMIDRLHHYIREL-RI 118
             + +I+ IQ +    +   ++P DQVL   HLLEA+L+G  LFL F+IDR+HHY+R+L  +
Sbjct:    61 LMSIVKIQNKGA--KLGTMSPMDQVLWRTHLLEASLLGVVLFLGFIIDRMHHYLRKLINL 118

Query:   119 R------RKTMEAIKNQSRGFEDGKAASSEEIKALEDQMXXXXXXXXXXXXXXXXXXXXA 172
             R      ++ +E ++ +    ++ +  +S+EIK L+ ++                     
Sbjct:   119 RSNVGSSKEELEQLQKERTELKEKEEKASKEIKQLQVKLSSITERLKKAETESKEKEKKL 178

Query:   173 NAAETNAVALRKQSEGFLFEYD 194
               AET+  AL+KQS   L EYD
Sbjct:   179 ETAETHVTALQKQSAELLLEYD 200

GO:0003674 "molecular_function" evidence=ND

GO:0005783 "endoplasmic reticulum" evidence=IEA

GO:0006886 "intracellular protein transport" evidence=IEA

GO:0009507 "chloroplast" evidence=ISM

GO:0016021 "integral to membrane" evidence=IEA

TAIR|locus:2098520 AT3G07190 "AT3G07190" [Arabidopsis thaliana (taxid:3702)]

 Score = 249 (92.7 bits), Expect = 3.0e-21, P = 3.0e-21
 Identities = 66/202 (32%), Positives = 100/202 (49%)

Query:     1 MQQLLFTVMFSEMALIMVLLFKT-PLRKLLIMSLDXXXXXXXXXXXXXXXXXXXXMLISS 59
             M QLLF V+F E A+  +LL K  PLR+L++ SLD                    +L+S+
Sbjct:     1 MIQLLFLVLFVEGAIAFLLLVKIGPLRELVMKSLDQLKLGKRPATLKTIAGTMSVILLSN 60

Query:    60 VYNIMMIQKRWIDDEGAVVNPTDQVLLANHLLEATLMGASLFLAFMIDRLHHYIRELRIR 119
             + NI+ IQ +    +   ++P DQVL   HLLEA+LMG  LF  F+IDR HHY+ +L   
Sbjct:    61 LMNIIKIQNKGA--KLGTMSPMDQVLWRTHLLEASLMGVVLFFGFIIDRTHHYLEKLITL 118

Query:   120 RKT-------MEAIKNQSRGFEDGKAASSEEIKALEDQMXXXXXXXXXXXXXXXXXXXXA 172
             R         +E ++ +    ++ +  +S+EIK L++++                     
Sbjct:   119 RSNVGSSKGELEELRKERIELKEKEEKTSKEIKQLKEKLSCVSENLKKLEKESKEKETKL 178

Query:   173 NAAETNAVALRKQSEGFLFEYD 194
               AE +  AL+KQS   L EYD
Sbjct:   179 ETAEAHVTALQKQSSELLLEYD 200

GO:0003674 "molecular_function" evidence=ND

GO:0005783 "endoplasmic reticulum" evidence=IEA

GO:0006886 "intracellular protein transport" evidence=IEA

GO:0009507 "chloroplast" evidence=ISM

GO:0016021 "integral to membrane" evidence=IEA

TAIR|locus:2092364 AT3G20450 "AT3G20450" [Arabidopsis thaliana (taxid:3702)]

 Score = 234 (87.4 bits), Expect = 1.2e-19, P = 1.2e-19
 Identities = 53/133 (39%), Positives = 75/133 (56%)

Query:     1 MQQLLFTVMFSEMALIMVLLFKTPLRKLLIMSLDXXXXXXXXXXXXXXXXXXXXMLISSV 60
             M QLLFT++  E  LI+ L F TP R++++  LD                    +  S +
Sbjct:     5 MFQLLFTIVTIEAVLILTLGFGTPARRVVVKLLDLSKQGRAPLVAKTVAATMLVLFGSVM 64

Query:    61 YNIMMIQKRWIDDEGAVVNPTDQVLLANHLLEATLMGASLFLAFMIDRLHHYIRELRIRR 120
             ++ + I  R + + G V N TDQV+ AN LLEA LMG  LFLA +IDR+H+Y REL+I R
Sbjct:    65 FSTIQIHTR-VSESGGVANSTDQVMFANRLLEAFLMGTVLFLAMVIDRMHYYTRELQITR 123

Query:   121 KTME-AIKNQSRG 132
             + +E A+K    G
Sbjct:   124 RNLEIAVKKGKTG 136


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.321   0.131   0.361    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      308       254   0.00084  114 3  10 22  0.40    33
                                                     32  0.47    36


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  5
  No. of states in DFA:  616 (65 KB)
  Total size of DFA:  242 KB (2132 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  24.31u 0.09s 24.40t   Elapsed:  00:00:01
  Total cpu time:  24.31u 0.09s 24.40t   Elapsed:  00:00:01
  Start:  Fri May 10 09:09:10 2013   End:  Fri May 10 09:09:11 2013

GO:0003674 "molecular_function" evidence=ND

GO:0005783 "endoplasmic reticulum" evidence=IEA

GO:0006886 "intracellular protein transport" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	308
pfam05529	149	pfam05529, Bap31, B-cell receptor-associated prote	1e-05
TIGR02168	1179	TIGR02168, SMC_prok_B, chromosome segregation prot	4e-05
TIGR02168	1179	TIGR02168, SMC_prok_B, chromosome segregation prot	4e-04
TIGR04211	198	TIGR04211, SH3_and_anchor, SH3 domain protein	0.001
pfam10211	189	pfam10211, Ax_dynein_light, Axonemal dynein light	0.003

>gnl|CDD|218624 pfam05529, Bap31, B-cell receptor-associated protein 31-like

 Score = 44.1 bits (105), Expect = 1e-05
 Identities = 32/144 (22%), Positives = 67/144 (46%), Gaps = 16/144 (11%)

Query: 3   QLLFTVMFSEMA--LIMVLLFKTPLRKLLIMSLDRVKRGR-GPVVVKTVAGTVLVMLISS 59
            L+F ++++EMA  L++VL   +P+R+ +  S+ +++  +      K +   +LV+ I S
Sbjct: 6   TLVFGLLYAEMAVFLLLVLPLPSPIRRKIFKSVSKLQLSQQFQTGFKILLIFLLVLFIDS 65

Query: 60  VYNIMMIQKRWIDDEGAVVNPTDQVLLANHLLEATLM---------GASLFLAFMIDRLH 110
           V  +          +G+          + +   A L          G +LFL  +I R+ 
Sbjct: 66  VRRVYKYSGE---LQGSGNASLGGGERSEYQTLARLFYAQRNLYLSGFTLFLTLVIRRVV 122

Query: 111 HYIRELRIRRKTMEAIKNQSRGFE 134
             + EL ++ + +EA+K Q+   +
Sbjct: 123 TLVEEL-VKLEELEALKKQAENLQ 145

Bap31 is a polytopic integral protein of the endoplasmic reticulum membrane and a substrate of caspase-8. Bap31 is cleaved within its cytosolic domain, generating pro-apoptotic p20 Bap31. Length = 149

>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type

 Score = 44.7 bits (106), Expect = 4e-05
 Identities = 34/129 (26%), Positives = 57/129 (44%), Gaps = 4/129 (3%)

Query: 106 IDRLHHYIRELRIRRK----TMEAIKNQSRGFEDGKAASSEEIKALEDQMTTLKLKLKDL 161
           I RL    + LR R       +E ++ Q    E      +EE+  LE+++  LK +L+ L
Sbjct: 297 ISRLEQQKQILRERLANLERQLEELEAQLEELESKLDELAEELAELEEKLEELKEELESL 356

Query: 162 ESELETKSKEANAAETNAVALRKQSEGFLFEYDRLLEENQNLRNQLQSLDWRLSHSDFRT 221
           E+ELE    E    E+    L +Q E    +  +L  +  +L N+++ L+ RL   + R 
Sbjct: 357 EAELEELEAELEELESRLEELEEQLETLRSKVAQLELQIASLNNEIERLEARLERLEDRR 416

Query: 222 VYWNAEKTA 230
                E   
Sbjct: 417 ERLQQEIEE 425

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1179

>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type

 Score = 41.6 bits (98), Expect = 4e-04
 Identities = 20/102 (19%), Positives = 44/102 (43%), Gaps = 7/102 (6%)

Query: 114 RELRIRRKTMEAIKNQSRGFEDGKAASSEEIKALEDQMTTLKLKLKDLESELETKSKEAN 173
           RE+    + +E ++ +            + +  L  ++  L+ +L+ L  ELE  S++ +
Sbjct: 677 REIEELEEKIEELEEKIA-------ELEKALAELRKELEELEEELEQLRKELEELSRQIS 729

Query: 174 AAETNAVALRKQSEGFLFEYDRLLEENQNLRNQLQSLDWRLS 215
           A   +   L  + E       +L +E   L  +++ L+ RL 
Sbjct: 730 ALRKDLARLEAEVEQLEERIAQLSKELTELEAEIEELEERLE 771

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1179

>gnl|CDD|234501 TIGR04211, SH3_and_anchor, SH3 domain protein

 Score = 38.8 bits (91), Expect = 0.001
 Identities = 22/94 (23%), Positives = 42/94 (44%), Gaps = 10/94 (10%)

Query: 120 RKTMEAIKNQSRGFEDGKAASSEEIKALEDQMTTLKLKLKDLESELETKSKEAN---AAE 176
           R+ +  ++ +    ++  A   E++  L+ +   LK +L  LE+ELE   KE        
Sbjct: 65  RERLPELQQELAELQEELAELQEQLAELQQENQELKQELSTLEAELERLQKELARIKQLS 124

Query: 177 TNAVALRKQSEGFLFEYDRLLEENQNLRNQLQSL 210
            NA+ L ++          L EE   L+ + ++L
Sbjct: 125 ANAIELDEE-------NRELREELAELKQENEAL 151

Members of this protein family have a signal peptide, a strongly conserved SH3 domain, a variable region, and then a C-terminal hydrophobic transmembrane alpha helix region. Length = 198

>gnl|CDD|204414 pfam10211, Ax_dynein_light, Axonemal dynein light chain

 Score = 37.6 bits (88), Expect = 0.003
 Identities = 25/91 (27%), Positives = 49/91 (53%), Gaps = 14/91 (15%)

Query: 120 RKTMEAIKNQSRGFEDGKAASSEEIKALEDQMTTLKLKLKDLESELETKSKEANAAETNA 179
           RK ++A        E GK+   +EIK LE++   L+ ++ +LE++LE  + E    E   
Sbjct: 113 RKALQA--------EQGKSELEQEIKKLEEEKEELEKRVAELEAKLE--AIEKREEEERQ 162

Query: 180 VALRKQSEGFLFEYDRLLEENQNLRNQLQSL 210
           +  ++ ++    E   L ++NQ L++QL+ +
Sbjct: 163 IEEKRHAD----EIAFLKKQNQQLKSQLEQI 189

Axonemal dynein light chain proteins play a dynamic role in flagellar and cilia motility. Eukaryotic cilia and flagella are complex organelles consisting of a core structure, the axoneme, which is composed of nine microtubule doublets forming a cylinder that surrounds a pair of central singlet microtubules. This ultra-structural arrangement seems to be one of the most stable micro-tubular assemblies known and is responsible for the flagellar and ciliary movement of a large number of organisms ranging from protozoan to mammals. This light chain interacts directly with the N-terminal half of the heavy chains. Length = 189

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	308
KOG1962	216	consensus B-cell receptor-associated protein and r	100.0
PF05529	192	Bap31: B-cell receptor-associated protein 31-like	100.0
COG5374	192	Uncharacterized conserved protein [Function unknow	99.97
KOG1962	216	consensus B-cell receptor-associated protein and r	98.61
PF11559	151	ADIP: Afadin- and alpha -actinin-Binding; InterPro	96.24
COG4372	499	Uncharacterized protein conserved in bacteria with	96.15
PRK11637	428	AmiB activator; Provisional	96.08
PF02183	45	HALZ: Homeobox associated leucine zipper; InterPro	95.63
PRK09039	343	hypothetical protein; Validated	94.26
PF14662	193	CCDC155: Coiled-coil region of CCDC155	94.25
PF08614	194	ATG16: Autophagy protein 16 (ATG16); InterPro: IPR	94.14
PF00038	312	Filament: Intermediate filament protein; InterPro:	94.13
PRK11637	428	AmiB activator; Provisional	93.41
KOG0995	581	consensus Centromere-associated protein HEC1 [Cell	93.38
PF06810	155	Phage_GP20: Phage minor structural protein GP20; I	93.07
COG5185	622	HEC1 Protein involved in chromosome segregation, i	92.72
PF04156	191	IncA: IncA protein; InterPro: IPR007285 Chlamydia	92.61
PF14662	193	CCDC155: Coiled-coil region of CCDC155	92.1
TIGR03752	472	conj_TIGR03752 integrating conjugative element pro	91.39
COG4942	420	Membrane-bound metallopeptidase [Cell division and	91.35
PRK10884	206	SH3 domain-containing protein; Provisional	91.22
PF11932	251	DUF3450: Protein of unknown function (DUF3450); In	91.18
PF08317	325	Spc7: Spc7 kinetochore protein; InterPro: IPR01325	90.96
PF04156	191	IncA: IncA protein; InterPro: IPR007285 Chlamydia	90.88
TIGR03185	650	DNA_S_dndD DNA sulfur modification protein DndD. T	90.86
COG1579	239	Zn-ribbon protein, possibly nucleic acid-binding [	90.6
PF10473	140	CENP-F_leu_zip: Leucine-rich repeats of kinetochor	90.59
PF07926	132	TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro:	90.57
PF05266	190	DUF724: Protein of unknown function (DUF724); Inte	90.57
PF13851	201	GAS: Growth-arrest specific micro-tubule binding	90.44
COG3883	265	Uncharacterized protein conserved in bacteria [Fun	90.19
PRK10884	206	SH3 domain-containing protein; Provisional	90.16
PF04111	314	APG6: Autophagy protein Apg6; InterPro: IPR007243	90.01
PF09726	697	Macoilin: Transmembrane protein; InterPro: IPR0191	89.99
PF08614	194	ATG16: Autophagy protein 16 (ATG16); InterPro: IPR	89.65
PF10473	140	CENP-F_leu_zip: Leucine-rich repeats of kinetochor	89.38
PRK12704	520	phosphodiesterase; Provisional	89.37
PF04111	314	APG6: Autophagy protein Apg6; InterPro: IPR007243	89.24
PF05483	786	SCP-1: Synaptonemal complex protein 1 (SCP-1); Int	88.89
PF11559	151	ADIP: Afadin- and alpha -actinin-Binding; InterPro	88.47
PF07888	546	CALCOCO1: Calcium binding and coiled-coil domain (	88.28
PF10186	302	Atg14: UV radiation resistance protein and autopha	88.21
TIGR02168	1179	SMC_prok_B chromosome segregation protein SMC, com	88.04
PF10481	307	CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR0	87.94
PHA02562	562	46 endonuclease subunit; Provisional	87.67
PF10234	267	Cluap1: Clusterin-associated protein-1; InterPro:	87.42
PF09738	302	DUF2051: Double stranded RNA binding protein (DUF2	87.33
PF07888	546	CALCOCO1: Calcium binding and coiled-coil domain (	86.8
PF07106	169	TBPIP: Tat binding protein 1(TBP-1)-interacting pr	86.62
PF12777	344	MT: Microtubule-binding stalk of dynein motor; Int	86.26
COG3879	247	Uncharacterized protein conserved in bacteria [Fun	86.12
smart00787	312	Spc7 Spc7 kinetochore protein. This domain is foun	86.01
PF00038	312	Filament: Intermediate filament protein; InterPro:	85.85
COG1196	1163	Smc Chromosome segregation ATPases [Cell division	85.47
PF12718	143	Tropomyosin_1: Tropomyosin like; InterPro: IPR0005	85.44
PF07407	420	Seadorna_VP6: Seadornavirus VP6 protein; InterPro:	85.24
KOG0977	546	consensus Nuclear envelope protein lamin, intermed	84.82
PF07106	169	TBPIP: Tat binding protein 1(TBP-1)-interacting pr	84.65
PF12329	74	TMF_DNA_bd: TATA element modulatory factor 1 DNA b	84.62
PF00261	237	Tropomyosin: Tropomyosin; InterPro: IPR000533 Trop	84.43
PF05266	190	DUF724: Protein of unknown function (DUF724); Inte	84.34
PF14235	157	DUF4337: Domain of unknown function (DUF4337)	84.16
PF10211	189	Ax_dynein_light: Axonemal dynein light chain; Inte	83.37
smart00503	117	SynN Syntaxin N-terminal domain. Three-helix domai	83.1
PRK12704	520	phosphodiesterase; Provisional	82.7
KOG1760	131	consensus Molecular chaperone Prefoldin, subunit 4	82.47
KOG0999	772	consensus Microtubule-associated protein Bicaudal-	82.41
PF06005	72	DUF904: Protein of unknown function (DUF904); Inte	82.34
KOG0804	493	consensus Cytoplasmic Zn-finger protein BRAP2 (BRC	82.31
KOG0243	1041	consensus Kinesin-like protein [Cytoskeleton]	82.27
PF09730	717	BicD: Microtubule-associated protein Bicaudal-D; I	82.15
KOG0933	1174	consensus Structural maintenance of chromosome pro	82.0
PF10234	267	Cluap1: Clusterin-associated protein-1; InterPro:	81.4
PF06810	155	Phage_GP20: Phage minor structural protein GP20; I	81.15
PF11932	251	DUF3450: Protein of unknown function (DUF3450); In	80.77
PHA02562	562	46 endonuclease subunit; Provisional	80.65
PF06156	107	DUF972: Protein of unknown function (DUF972); Inte	80.62
PF04849	306	HAP1_N: HAP1 N-terminal conserved region; InterPro	80.44

>KOG1962 consensus B-cell receptor-associated protein and related proteins [Defense mechanisms]

Probab=100.00  E-value=3.7e-44  Score=325.62  Aligned_cols=208  Identities=32%  Similarity=0.422  Sum_probs=166.4

Q ss_pred             CHHHHHHHHHHHHHHHHHHHcchh-HHHHHH-HHHHHHhhcc-chhhHHHHHHHHHHHHHHHHHHHHHhhhhccccCCCC
Q 021727            1 MQQLLFTVMFSEMALIMVLLFKTP-LRKLLI-MSLDRVKRGR-GPVVVKTVAGTVLVMLISSVYNIMMIQKRWIDDEGAV   77 (308)
Q Consensus         1 m~sLVF~lL~~Emav~lLLvLPlP-~R~~~i-~~l~~~~~~r-~~~~~~iv~~~l~vLFlDSirrm~K~~~~~~~~~~~~   77 (308)
                      ||++||++||+||+++++||+|+| .||+.+ +.......++ +.+++.+++++++++|+|||+|+++|..++....+..
T Consensus         1 ~~tlvf~iL~~Eial~~iL~Lpip~r~~~~~~~~~~~~~~~~~~~~~i~~~~~villlfiDsvr~i~~~~~~~~~~~n~~   80 (216)
T KOG1962|consen    1 YWTLVFTILYAEIALFLILLLPIPPRRRRKIFKDRLKSGLAPQVLKTIATTMIVILLLFIDSVRRIQKYVSEYGSMANPT   80 (216)
T ss_pred             CHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccCCc
Confidence            799999999999999999999997 455543 3333344444 7899999999999999999999999988753220112


Q ss_pred             CCc--hhHHHHHHHHHH--HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccchHHHHHhHHHhHH
Q 021727           78 VNP--TDQVLLANHLLE--ATLMGASLFLAFMIDRLHHYIRELRIRRKTMEAIKNQSRGFEDGKAASSEEIKALEDQMTT  153 (308)
Q Consensus        78 ~~p--~~qv~arkfy~q--aYISGFsLFL~LVI~Rl~sLI~eLa~le~~~ealkKQa~~a~~~~~~~~~e~~~~~~e~~~  153 (308)
                      .+|  ..+.+|..|+.|  .|||||+|||||||+|+|++|++++.++++ +.++++++.+++..+..+    ...+++.+
T Consensus        81 ~~~~a~~~~~~~l~raqrn~YisGf~LFL~lvI~R~~~ll~~l~~l~~~-~~~~~~~~~lk~~~~~~~----~~~~~~~~  155 (216)
T KOG1962|consen   81 DQPLARTHLLEALFRAQRNLYISGFVLFLSLVIRRLHTLLRELATLRAN-EKAMKENEALKKQLENSS----KLEEENDK  155 (216)
T ss_pred             cchHHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHHHHHHHHHHHHhh-HHHHHHHHHHHHhhhccc----chhhhHHH
Confidence            333  456667755555  599999999999999999999999999996 556666554443222111    14456667


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhHHHHHHHHHHHHHHHHHhHhhcccc
Q 021727          154 LKLKLKDLESELETKSKEANAAETNAVALRKQSEGFLFEYDRLLEENQNLRNQLQSLDWR  213 (308)
Q Consensus       154 l~~evekLk~eLk~k~kel~kae~d~eaLKKQae~L~kEYDRL~eE~~kLq~~l~~~d~~  213 (308)
                      +.++.++|++|++++++++++++++.++|+||++++++|||||+|||++||++++.++++
T Consensus       156 ~~~~~~kL~~el~~~~~~Le~~~~~~~al~Kq~e~~~~EydrLlee~~~Lq~~i~~~~~k  215 (216)
T KOG1962|consen  156 LKADLEKLETELEKKQKKLEKAQKKVDALKKQSEGLQDEYDRLLEEYSKLQEQIESGGKK  215 (216)
T ss_pred             HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhccCCC
Confidence            888999999999999999999999999999999999999999999999999999977654

>PF05529 Bap31: B-cell receptor-associated protein 31-like ; InterPro: IPR008417 Bap31 is a polytopic integral protein of the endoplasmic reticulum membrane and a substrate of caspase-8

Probab=100.00  E-value=4.7e-40  Score=292.62  Aligned_cols=180  Identities=28%  Similarity=0.461  Sum_probs=146.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHcchh--HHHHHHHHHHH-HhhccchhhHHHHHHHHHHHHHHHHHHHHHhhhhccccCCCCC
Q 021727            2 QQLLFTVMFSEMALIMVLLFKTP--LRKLLIMSLDR-VKRGRGPVVVKTVAGTVLVMLISSVYNIMMIQKRWIDDEGAVV   78 (308)
Q Consensus         2 ~sLVF~lL~~Emav~lLLvLPlP--~R~~~i~~l~~-~~~~r~~~~~~iv~~~l~vLFlDSirrm~K~~~~~~~~~~~~~   78 (308)
                      |++||++|++||+++++||+|+|  +|+.++++++. ++.+++++++++++++++++|+|||++|+||+.+..+..+++.
T Consensus         5 ~~lvf~~L~~Ei~~~~lL~lPlp~~~R~~i~~~~~~~~~~~~~~~~~~~~~~~~~~lf~ds~~~~~k~~~~~~~~~~~~~   84 (192)
T PF05529_consen    5 WSLVFGLLYAEIAVLLLLVLPLPSPIRRKIFKFLDKSFFSGKFKTVFKILLAILLLLFLDSIRRMYKYSSEYEEAKDDHP   84 (192)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccccCC
Confidence            79999999999999999999995  88888888875 4456699999999999999999999999999887643201122


Q ss_pred             --C-chhHHHHHHHHHH--HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccchHHHHHhHHHhHH
Q 021727           79 --N-PTDQVLLANHLLE--ATLMGASLFLAFMIDRLHHYIRELRIRRKTMEAIKNQSRGFEDGKAASSEEIKALEDQMTT  153 (308)
Q Consensus        79 --~-p~~qv~arkfy~q--aYISGFsLFL~LVI~Rl~sLI~eLa~le~~~ealkKQa~~a~~~~~~~~~e~~~~~~e~~~  153 (308)
                        + ..+|++|++||+|  +|||||+|||++||+|+++++.+++.++++.+++++|+++.++..++      ..      
T Consensus        85 ~~~~~~~~~~~~~fraQRN~YIsGf~LfL~l~I~r~~~li~~l~~~~~~~~~~~kq~~~~~~~~~~------~~------  152 (192)
T PF05529_consen   85 NPDRTEDQVLAKKFRAQRNMYISGFALFLSLVIRRVHSLIKELIKLEEKLEALKKQAESASEAAEK------LL------  152 (192)
T ss_pred             CccchhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhh------hh------
Confidence              2 4688899999999  89999999999999999999999999999999999998866542111      01      


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhHHHHHH
Q 021727          154 LKLKLKDLESELETKSKEANAAETNAVALRKQSEGFLFEYD  194 (308)
Q Consensus       154 l~~evekLk~eLk~k~kel~kae~d~eaLKKQae~L~kEYD  194 (308)
                       +++.++++.|+++++++++++++|+++||||++|+++|||
T Consensus       153 -~~~~~~~~~ei~~lk~el~~~~~~~~~LkkQ~~~l~~eyd  192 (192)
T PF05529_consen  153 -KEENKKLSEEIEKLKKELEKKEKEIEALKKQSEGLQKEYD  192 (192)
T ss_pred             -hhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Confidence             2233444455555555555677789999999999999998

Bap31 is cleaved within its cytosolic domain, generating pro-apoptotic p20 Bap31 [].; GO: 0006886 intracellular protein transport, 0005783 endoplasmic reticulum, 0016021 integral to membrane

>COG5374 Uncharacterized conserved protein [Function unknown]

Probab=99.97  E-value=9.8e-30  Score=224.71  Aligned_cols=175  Identities=21%  Similarity=0.285  Sum_probs=132.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHcchh--HHHHHHHHHHHHhh-ccchhhHHHHHHHHHHHHHHHHHHHHHhhhhccccCCCCC
Q 021727            2 QQLLFTVMFSEMALIMVLLFKTP--LRKLLIMSLDRVKR-GRGPVVVKTVAGTVLVMLISSVYNIMMIQKRWIDDEGAVV   78 (308)
Q Consensus         2 ~sLVF~lL~~Emav~lLLvLPlP--~R~~~i~~l~~~~~-~r~~~~~~iv~~~l~vLFlDSirrm~K~~~~~~~~~~~~~   78 (308)
                      |++||.+|++||++|++|+||+|  .|+++++.++.++. ++++++++++++++++||+|||+|+++++.+....++...
T Consensus         5 ~~lvfslL~vEm~~f~il~LPlp~r~RR~l~~~~~~~~~~~~~k~il~i~~~~IllLFiDS~~Rv~rv~~~~nl~~a~~n   84 (192)
T COG5374           5 YTLVFSLLVVEMVMFFILVLPLPKRLRRSLMKLYSTSKVYRGFKHILKITFIFILLLFIDSWKRVYRVSKEANLYSASIN   84 (192)
T ss_pred             HHHHHHHHHHHHHHHHHHHccCcHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHhHHhhhhhhhhhhcccccc
Confidence            79999999999999999999999  67888888887665 4499999999999999999999999999887643212122


Q ss_pred             C---chhHHHHHHHHHH--HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccchHHHHHhHHHhHH
Q 021727           79 N---PTDQVLLANHLLE--ATLMGASLFLAFMIDRLHHYIRELRIRRKTMEAIKNQSRGFEDGKAASSEEIKALEDQMTT  153 (308)
Q Consensus        79 ~---p~~qv~arkfy~q--aYISGFsLFL~LVI~Rl~sLI~eLa~le~~~ealkKQa~~a~~~~~~~~~e~~~~~~e~~~  153 (308)
                      +   .+.++++|+||+|  ||||||+|||.+|+.|+++++.++...++...              ++.|.          
T Consensus        85 ~~~~~~i~~las~fy~qrnmyl~g~~L~l~~~v~~~~~~v~~ml~~~~~~~--------------~k~D~----------  140 (192)
T COG5374          85 NYAVTRIAVLASRFYAQRNMYLSGSALFLSIVVMRVMSIVEEMLEENAKKG--------------GKIDK----------  140 (192)
T ss_pred             ccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc--------------cchhh----------
Confidence            2   2468999999999  89999999999999999999999998886222              11111          


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhHHHHHHHHHHHHHHHHHhHhhcc
Q 021727          154 LKLKLKDLESELETKSKEANAAETNAVALRKQSEGFLFEYDRLLEENQNLRNQLQSLD  211 (308)
Q Consensus       154 l~~evekLk~eLk~k~kel~kae~d~eaLKKQae~L~kEYDRL~eE~~kLq~~l~~~d  211 (308)
                      .+.+..+||++       +.++..+++.|+|+-+++.++||.    ++++.++.+++.
T Consensus       141 ~eA~~t~lk~~-------~~~~~~~le~Lqkn~~~~~k~~d~----~ne~~~~v~~e~  187 (192)
T COG5374         141 MEADSTDLKAR-------LRKAQILLEGLQKNQEELFKLLDK----YNELREQVQKES  187 (192)
T ss_pred             hhcchHHHHHH-------HhhhhHHHHHHHHHHHHHHHHHHH----HhHHHHHHHHHH
Confidence            12223334443       445556789999988777777654    455565555443

>KOG1962 consensus B-cell receptor-associated protein and related proteins [Defense mechanisms]

Probab=98.61  E-value=2.6e-06  Score=78.50  Aligned_cols=156  Identities=23%  Similarity=0.303  Sum_probs=120.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhhccccCCCCCCchhHHHHHHHHHH-HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021727           45 VKTVAGTVLVMLISSVYNIMMIQKRWIDDEGAVVNPTDQVLLANHLLE-ATLMGASLFLAFMIDRLHHYIRELRIRRKTM  123 (308)
Q Consensus        45 ~~iv~~~l~vLFlDSirrm~K~~~~~~~~~~~~~~p~~qv~arkfy~q-aYISGFsLFL~LVI~Rl~sLI~eLa~le~~~  123 (308)
                      .++++++++++++--+-.+++++...... +...||.+++.++.++.. +|..++-||++=++==+.-+|.++..+-..+
T Consensus        45 ~~~i~~~~~villlfiDsvr~i~~~~~~~-~~~~n~~~~~~a~~~~~~~l~raqrn~YisGf~LFL~lvI~R~~~ll~~l  123 (216)
T KOG1962|consen   45 LKTIATTMIVILLLFIDSVRRIQKYVSEY-GSMANPTDQPLARTHLLEALFRAQRNLYISGFVLFLSLVIRRLHTLLREL  123 (216)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhhhh-hcccCCccchHHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHHHHHHHH
Confidence            45667888899999999999999987666 667789999999988888 7999999999866666777778888877776


Q ss_pred             HHHHhcccccccccccchHHHHHhHHHh-HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhHHHHHHHHHHHHHH
Q 021727          124 EAIKNQSRGFEDGKAASSEEIKALEDQM-TTLKLKLKDLESELETKSKEANAAETNAVALRKQSEGFLFEYDRLLEENQN  202 (308)
Q Consensus       124 ealkKQa~~a~~~~~~~~~e~~~~~~e~-~~l~~evekLk~eLk~k~kel~kae~d~eaLKKQae~L~kEYDRL~eE~~k  202 (308)
                      ..++.+ +.+.+    .....+. ..++ ..+.+|..+++.+++.+++|+++...+++..+++.+.+.+--+++.+||+.
T Consensus       124 ~~l~~~-~~~~~----~~~~lk~-~~~~~~~~~~~~~~~~~~~~kL~~el~~~~~~Le~~~~~~~al~Kq~e~~~~Eydr  197 (216)
T KOG1962|consen  124 ATLRAN-EKAMK----ENEALKK-QLENSSKLEEENDKLKADLEKLETELEKKQKKLEKAQKKVDALKKQSEGLQDEYDR  197 (216)
T ss_pred             HHHHhh-HHHHH----HHHHHHH-hhhcccchhhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHH
Confidence            666654 11111    0111111 1111 225677888999999999999999999999999999999999999999999


Q ss_pred             HHHhH
Q 021727          203 LRNQL  207 (308)
Q Consensus       203 Lq~~l  207 (308)
                      |.++-
T Consensus       198 Llee~  202 (216)
T KOG1962|consen  198 LLEEY  202 (216)
T ss_pred             HHHHH
Confidence            87553

>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch

Probab=96.24  E-value=0.19  Score=43.16  Aligned_cols=90  Identities=23%  Similarity=0.337  Sum_probs=61.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhcccccccccccchHHHHHhHHHhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHH
Q 021727          105 MIDRLHHYIRELRIRRKTMEAIKNQSRGFEDGKAASSEEIKALEDQMTTLKLKLKDLESELETKSKEANAAETNAVALRK  184 (308)
Q Consensus       105 VI~Rl~sLI~eLa~le~~~ealkKQa~~a~~~~~~~~~e~~~~~~e~~~l~~evekLk~eLk~k~kel~kae~d~eaLKK  184 (308)
                      ||+-++.||.....-....+.+..+              ......+++.+...++.|+.+++.++.++..++.+..++++
T Consensus        36 vin~i~~Ll~~~~r~~~~~e~l~~~--------------~~~l~~d~~~l~~~~~rL~~~~~~~ere~~~~~~~~~~l~~  101 (151)
T PF11559_consen   36 VINCIYDLLQQRDRDMEQREDLSDK--------------LRRLRSDIERLQNDVERLKEQLEELERELASAEEKERQLQK  101 (151)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            7777777777666666655555332              23344456666777777777777777777777777777777


Q ss_pred             HHhhHHHHHHHHHHHHHHHHHhHh
Q 021727          185 QSEGFLFEYDRLLEENQNLRNQLQ  208 (308)
Q Consensus       185 Qae~L~kEYDRL~eE~~kLq~~l~  208 (308)
                      +...+..---...+|.++++..++
T Consensus       102 ~~~~~~~~~k~~kee~~klk~~~~  125 (151)
T PF11559_consen  102 QLKSLEAKLKQEKEELQKLKNQLQ  125 (151)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH
Confidence            777777777777777777766554

pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.

>COG4372 Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown]

Probab=96.15  E-value=0.11  Score=52.33  Aligned_cols=116  Identities=20%  Similarity=0.281  Sum_probs=82.3

Q ss_pred             HHHHhHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhcccccccccccchHHHHHhHHHhHHHHHHHHHHHHHHHHHHHH
Q 021727           93 ATLMGASLFLAFMIDR-LHHYIRELRIRRKTMEAIKNQSRGFEDGKAASSEEIKALEDQMTTLKLKLKDLESELETKSKE  171 (308)
Q Consensus        93 aYISGFsLFL~LVI~R-l~sLI~eLa~le~~~ealkKQa~~a~~~~~~~~~e~~~~~~e~~~l~~evekLk~eLk~k~ke  171 (308)
                      |-||..+|-..|+++| +.+=|.++.....++++++.|.+.++..+..-..|-++...|.++.++|-+..+.++.+..++
T Consensus        52 ~liSA~tLailf~~~~~lr~gVfqlddi~~qlr~~rtel~~a~~~k~~~e~er~~~~~El~~~r~e~~~v~~~~~~a~~n  131 (499)
T COG4372          52 MLISAATLAILFLLNRNLRSGVFQLDDIRPQLRALRTELGTAQGEKRAAETEREAARSELQKARQEREAVRQELAAARQN  131 (499)
T ss_pred             chhhHHHHHHHHHhhhhHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            5677778877777776 556677888888888888887665554221111111223335555666777788888888889


Q ss_pred             HHHhhhHHHHHHHHHhhHHHHHHHHHHHHHHHHHhHh
Q 021727          172 ANAAETNAVALRKQSEGFLFEYDRLLEENQNLRNQLQ  208 (308)
Q Consensus       172 l~kae~d~eaLKKQae~L~kEYDRL~eE~~kLq~~l~  208 (308)
                      +.++..++.-+.+|+.+++.+.-.|.+++.+|..+.+
T Consensus       132 ~~kAqQ~lar~t~Q~q~lqtrl~~l~~qr~ql~aq~q  168 (499)
T COG4372         132 LAKAQQELARLTKQAQDLQTRLKTLAEQRRQLEAQAQ  168 (499)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999998888888888776655444

>PRK11637 AmiB activator; Provisional

Probab=96.08  E-value=0.085  Score=52.69  Aligned_cols=63  Identities=8%  Similarity=-0.032  Sum_probs=41.4

Q ss_pred             HhHHHhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhHHHHHHHHHHHHHHHHHhHh
Q 021727          146 ALEDQMTTLKLKLKDLESELETKSKEANAAETNAVALRKQSEGFLFEYDRLLEENQNLRNQLQ  208 (308)
Q Consensus       146 ~~~~e~~~l~~evekLk~eLk~k~kel~kae~d~eaLKKQae~L~kEYDRL~eE~~kLq~~l~  208 (308)
                      ....+++.+..+++.+..++...+.++...+.+++.++++.+.++.+.+.+.+..........
T Consensus        72 ~~~~~l~~l~~qi~~~~~~i~~~~~~i~~~~~ei~~l~~eI~~~q~~l~~~~~~l~~rlra~Y  134 (428)
T PRK11637         72 SLLAQLKKQEEAISQASRKLRETQNTLNQLNKQIDELNASIAKLEQQQAAQERLLAAQLDAAF  134 (428)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344455556666667777777777777777777777777777777777777666665444433

>PF02183 HALZ: Homeobox associated leucine zipper; InterPro: IPR003106 This region is a plant specific leucine zipper that is always found associated with a homeobox []

Probab=95.63  E-value=0.024  Score=40.34  Aligned_cols=34  Identities=35%  Similarity=0.510  Sum_probs=31.2

Q ss_pred             hhHHHHHHHHHhhHHHHHHHHHHHHHHHHHhHhh
Q 021727          176 ETNAVALRKQSEGFLFEYDRLLEENQNLRNQLQS  209 (308)
Q Consensus       176 e~d~eaLKKQae~L~kEYDRL~eE~~kLq~~l~~  209 (308)
                      |.|-++||.+.+.|..+||+|..|+++|+.++..
T Consensus         4 E~Dy~~LK~~yd~Lk~~~~~L~~E~~~L~aev~~   37 (45)
T PF02183_consen    4 ERDYDALKASYDSLKAEYDSLKKENEKLRAEVQE   37 (45)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4589999999999999999999999999988764

; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus

>PRK09039 hypothetical protein; Validated

Probab=94.26  E-value=2.9  Score=41.13  Aligned_cols=48  Identities=15%  Similarity=0.146  Sum_probs=28.5

Q ss_pred             HhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhHHHHHHHHH
Q 021727          150 QMTTLKLKLKDLESELETKSKEANAAETNAVALRKQSEGFLFEYDRLL  197 (308)
Q Consensus       150 e~~~l~~evekLk~eLk~k~kel~kae~d~eaLKKQae~L~kEYDRL~  197 (308)
                      ++..|+.+|+.|+.++...+.+|..++......+.|.+.+..+-+..+
T Consensus       138 ~V~~L~~qI~aLr~Qla~le~~L~~ae~~~~~~~~~i~~L~~~L~~a~  185 (343)
T PRK09039        138 QVELLNQQIAALRRQLAALEAALDASEKRDRESQAKIADLGRRLNVAL  185 (343)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344555566666666666666665555555666666666666665554

>PF14662 CCDC155: Coiled-coil region of CCDC155

Probab=94.25  E-value=0.7  Score=42.38  Aligned_cols=77  Identities=12%  Similarity=0.181  Sum_probs=31.7

Q ss_pred             HHHHHHHHHHHHHHHHHhcccccccccccchHHHHHhHHHhHHHHHHHHHHHHHHHHHHHHHHHh---hhHHHHHHHHHh
Q 021727          111 HYIRELRIRRKTMEAIKNQSRGFEDGKAASSEEIKALEDQMTTLKLKLKDLESELETKSKEANAA---ETNAVALRKQSE  187 (308)
Q Consensus       111 sLI~eLa~le~~~ealkKQa~~a~~~~~~~~~e~~~~~~e~~~l~~evekLk~eLk~k~kel~ka---e~d~eaLKKQae  187 (308)
                      .++..+..++.+...+..+...++.       ......+.+..|..++.+|+.+++...+.+..+   +.+++-||.=+.
T Consensus         5 dL~~~v~dL~~~n~~L~~en~kL~~-------~ve~~ee~na~L~~e~~~L~~q~~s~Qqal~~aK~l~eEledLk~~~~   77 (193)
T PF14662_consen    5 DLLSCVEDLQLNNQKLADENAKLQR-------SVETAEEGNAQLAEEITDLRKQLKSLQQALQKAKALEEELEDLKTLAK   77 (193)
T ss_pred             HHHHHHHHHHHHhHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3444444444444444443332222       223333444444444444444444444444333   334444443333


Q ss_pred             hHHHHHH
Q 021727          188 GFLFEYD  194 (308)
Q Consensus       188 ~L~kEYD  194 (308)
                      .++.+|.
T Consensus        78 ~lEE~~~   84 (193)
T PF14662_consen   78 SLEEENR   84 (193)
T ss_pred             HHHHHHH
Confidence            3333333

>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells

Probab=94.14  E-value=0.37  Score=43.34  Aligned_cols=63  Identities=32%  Similarity=0.399  Sum_probs=52.1

Q ss_pred             HHHhHHHhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhHHHHHHHHHHHHHHHHHh
Q 021727          144 IKALEDQMTTLKLKLKDLESELETKSKEANAAETNAVALRKQSEGFLFEYDRLLEENQNLRNQ  206 (308)
Q Consensus       144 ~~~~~~e~~~l~~evekLk~eLk~k~kel~kae~d~eaLKKQae~L~kEYDRL~eE~~kLq~~  206 (308)
                      ......++..+..++..|+.+++++.+.+.....++.+|.-|..-++....+|.+||..|-+.
T Consensus       118 l~~l~~~~~~L~~~~~~l~~~l~ek~k~~e~l~DE~~~L~l~~~~~e~k~~~l~~En~~Lv~R  180 (194)
T PF08614_consen  118 LAELEAELAQLEEKIKDLEEELKEKNKANEILQDELQALQLQLNMLEEKLRKLEEENRELVER  180 (194)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            455666777788888889999999888888888889999999999999999999998886443

In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.

>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope

Probab=94.13  E-value=1.6  Score=41.30  Aligned_cols=30  Identities=20%  Similarity=0.424  Sum_probs=20.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhcccccc
Q 021727          105 MIDRLHHYIRELRIRRKTMEAIKNQSRGFE  134 (308)
Q Consensus       105 VI~Rl~sLI~eLa~le~~~ealkKQa~~a~  134 (308)
                      .=.|+.+||.....+++....+..+.....
T Consensus         9 LNdRla~YIekVr~LE~~N~~Le~~i~~~~   38 (312)
T PF00038_consen    9 LNDRLASYIEKVRFLEQENKRLESEIEELR   38 (312)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHH--
T ss_pred             HHHHHHHHHHHHHHHHHHhhhhHHHHHHHH
Confidence            446788888888888888777777665443

They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....

>PRK11637 AmiB activator; Provisional

Probab=93.41  E-value=0.74  Score=46.05  Aligned_cols=56  Identities=14%  Similarity=0.168  Sum_probs=28.9

Q ss_pred             HhHHHhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhHHHHHHHHHHHHH
Q 021727          146 ALEDQMTTLKLKLKDLESELETKSKEANAAETNAVALRKQSEGFLFEYDRLLEENQ  201 (308)
Q Consensus       146 ~~~~e~~~l~~evekLk~eLk~k~kel~kae~d~eaLKKQae~L~kEYDRL~eE~~  201 (308)
                      ....++..+..++..++.+++..+.++...+.+++.++++.+.....+.+++....
T Consensus        79 ~l~~qi~~~~~~i~~~~~~i~~~~~ei~~l~~eI~~~q~~l~~~~~~l~~rlra~Y  134 (428)
T PRK11637         79 KQEEAISQASRKLRETQNTLNQLNKQIDELNASIAKLEQQQAAQERLLAAQLDAAF  134 (428)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33444444455555555555555555555555555555555555555555444443

>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]

Probab=93.38  E-value=0.3  Score=51.02  Aligned_cols=66  Identities=26%  Similarity=0.299  Sum_probs=54.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhH---HHHHHHHHHHHHHHHHhHhhccccccccC
Q 021727          153 TLKLKLKDLESELETKSKEANAAETNAVALRKQSEGF---LFEYDRLLEENQNLRNQLQSLDWRLSHSD  218 (308)
Q Consensus       153 ~l~~evekLk~eLk~k~kel~kae~d~eaLKKQae~L---~kEYDRL~eE~~kLq~~l~~~d~~~s~~~  218 (308)
                      ...++++.|+.|++.++.|+++.+.+.+.||+|.++.   ..++.|..-|.++|+..+.......++-+
T Consensus       291 ~~~~~l~~l~~Eie~kEeE~e~lq~~~d~Lk~~Ie~Q~iS~~dve~mn~Er~~l~r~l~~i~~~~d~l~  359 (581)
T KOG0995|consen  291 HMEKKLEMLKSEIEEKEEEIEKLQKENDELKKQIELQGISGEDVERMNLERNKLKRELNKIQSELDRLS  359 (581)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3446788999999999999999999999999999987   67888899999888888876666554443

>PF06810 Phage_GP20: Phage minor structural protein GP20; InterPro: IPR009636 This family consists of several phage minor structural protein Gp20 sequences and prophage sequences of around 180 residues in length

Probab=93.07  E-value=0.73  Score=40.58  Aligned_cols=50  Identities=20%  Similarity=0.240  Sum_probs=38.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhh---hHHHHHHHHHhhHHHHHHHHHHHHHHH
Q 021727          154 LKLKLKDLESELETKSKEANAAE---TNAVALRKQSEGFLFEYDRLLEENQNL  203 (308)
Q Consensus       154 l~~evekLk~eLk~k~kel~kae---~d~eaLKKQae~L~kEYDRL~eE~~kL  203 (308)
                      ..++.+.++.+|+..++.|+.-+   .|.+.|++|++.++.+|+.-.++|+.-
T Consensus        25 ~~~e~~~~k~ql~~~d~~i~~Lk~~~~d~eeLk~~i~~lq~~~~~~~~~~e~~   77 (155)
T PF06810_consen   25 VKEERDNLKTQLKEADKQIKDLKKSAKDNEELKKQIEELQAKNKTAKEEYEAK   77 (155)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44566677777777776665554   499999999999999999888887753

The function of this family is unknown.; GO: 0005198 structural molecule activity

>COG5185 HEC1 Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning]

Probab=92.72  E-value=14  Score=38.47  Aligned_cols=58  Identities=28%  Similarity=0.369  Sum_probs=47.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhH---HHHHHHHHHHHHHHHHhHhhcccc
Q 021727          156 LKLKDLESELETKSKEANAAETNAVALRKQSEGF---LFEYDRLLEENQNLRNQLQSLDWR  213 (308)
Q Consensus       156 ~evekLk~eLk~k~kel~kae~d~eaLKKQae~L---~kEYDRL~eE~~kLq~~l~~~d~~  213 (308)
                      ..+++|+.+++.++.+++..+.+.+.|++|.++.   ..++.....|.++|-..+......
T Consensus       330 g~l~kl~~eie~kEeei~~L~~~~d~L~~q~~kq~Is~e~fe~mn~Ere~L~reL~~i~~~  390 (622)
T COG5185         330 GKLEKLKSEIELKEEEIKALQSNIDELHKQLRKQGISTEQFELMNQEREKLTRELDKINIQ  390 (622)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHhcch
Confidence            3578999999999999999999999999998876   567777777878887777755544

>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion

Probab=92.61  E-value=6.8  Score=34.52  Aligned_cols=54  Identities=28%  Similarity=0.361  Sum_probs=29.4

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhHHHHHHHHHHHHHHHH
Q 021727          151 MTTLKLKLKDLESELETKSKEANAAETNAVALRKQSEGFLFEYDRLLEENQNLR  204 (308)
Q Consensus       151 ~~~l~~evekLk~eLk~k~kel~kae~d~eaLKKQae~L~kEYDRL~eE~~kLq  204 (308)
                      +..++...+++.+++....+++...+..++.++.+.+.+..+|+++.+..++++
T Consensus       132 l~~l~~~~~~~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~  185 (191)
T PF04156_consen  132 LDSLDESIKELEKEIRELQKELQDSREEVQELRSQLERLQENLQQLEEKIQELQ  185 (191)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            333444455555555554444444555666666666666666666655544444

The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].

>PF14662 CCDC155: Coiled-coil region of CCDC155

Probab=92.10  E-value=3  Score=38.29  Aligned_cols=25  Identities=4%  Similarity=0.054  Sum_probs=15.5

Q ss_pred             HHHHHHHHHHHHHHHHHhccccccc
Q 021727          111 HYIRELRIRRKTMEAIKNQSRGFED  135 (308)
Q Consensus       111 sLI~eLa~le~~~ealkKQa~~a~~  135 (308)
                      ++=..-+++.+..+.+.+|+.+++.
T Consensus        33 ~~ee~na~L~~e~~~L~~q~~s~Qq   57 (193)
T PF14662_consen   33 TAEEGNAQLAEEITDLRKQLKSLQQ   57 (193)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3334455666777777777776654

>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family

Probab=91.39  E-value=2.8  Score=43.20  Aligned_cols=80  Identities=19%  Similarity=0.250  Sum_probs=44.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhcccccccccccchHHHHHhHHHhHHHHHHHHHHHHHHHHHHHHHHHh-hhHHHHHHHHH
Q 021727          108 RLHHYIRELRIRRKTMEAIKNQSRGFEDGKAASSEEIKALEDQMTTLKLKLKDLESELETKSKEANAA-ETNAVALRKQS  186 (308)
Q Consensus       108 Rl~sLI~eLa~le~~~ealkKQa~~a~~~~~~~~~e~~~~~~e~~~l~~evekLk~eLk~k~kel~ka-e~d~eaLKKQa  186 (308)
                      .+-+++-++..++.+++.+.+|                     |+.+++|+++|++.....+..+..+ +.....+.+|.
T Consensus        60 TlrTlva~~k~~r~~~~~l~~~---------------------N~~l~~eN~~L~~r~~~id~~i~~av~~~~~~~~~~~  118 (472)
T TIGR03752        60 TLRTLVAEVKELRKRLAKLISE---------------------NEALKAENERLQKREQSIDQQIQQAVQSETQELTKEI  118 (472)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHH---------------------HHHHHHHHHHHHHhhhhHHHHHHHHHHhhhHHHHHHH
Confidence            3445555666666665555543                     2333444444444444444433333 23345566677


Q ss_pred             hhHHHHHHHHHHHHHHHHHhHh
Q 021727          187 EGFLFEYDRLLEENQNLRNQLQ  208 (308)
Q Consensus       187 e~L~kEYDRL~eE~~kLq~~l~  208 (308)
                      +.++.+-.++....+.|+.+++
T Consensus       119 ~ql~~~~~~~~~~l~~l~~~l~  140 (472)
T TIGR03752       119 EQLKSERQQLQGLIDQLQRRLA  140 (472)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHh
Confidence            7777777777777777777764

Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.

>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]

Probab=91.35  E-value=3.3  Score=42.16  Aligned_cols=94  Identities=26%  Similarity=0.302  Sum_probs=54.7

Q ss_pred             HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccchHHHHHhHHHhHHHHHHHHHHHHHHHHHH
Q 021727           90 LLEATLMGASLFLAFMIDRLHHYIRELRIRRKTMEAIKNQSRGFEDGKAASSEEIKALEDQMTTLKLKLKDLESELETKS  169 (308)
Q Consensus        90 y~qaYISGFsLFL~LVI~Rl~sLI~eLa~le~~~ealkKQa~~a~~~~~~~~~e~~~~~~e~~~l~~evekLk~eLk~k~  169 (308)
                      +...=++|+.++.++.   ....-.++-..+.+.++..+              +.....++-.+|..+++++++++...+
T Consensus        17 ~~~~~l~~~~~~~s~s---~~a~~~~l~q~q~ei~~~~~--------------~i~~~~~~~~kL~~~lk~~e~~i~~~~   79 (420)
T COG4942          17 LLASLLSAAVLAAAFS---AAADDKQLKQIQKEIAALEK--------------KIREQQDQRAKLEKQLKSLETEIASLE   79 (420)
T ss_pred             HHHHHHHhcccccchh---HHhHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3344566666776666   33332444445544444432              122233344456666777777777777


Q ss_pred             HHHHHhhhHHHHHHHHHhhHHHHHHHHHHHH
Q 021727          170 KEANAAETNAVALRKQSEGFLFEYDRLLEEN  200 (308)
Q Consensus       170 kel~kae~d~eaLKKQae~L~kEYDRL~eE~  200 (308)
                      .++...+.+++.+.++.+.+...-..|..++
T Consensus        80 ~ql~~s~~~l~~~~~~I~~~~~~l~~l~~q~  110 (420)
T COG4942          80 AQLIETADDLKKLRKQIADLNARLNALEVQE  110 (420)
T ss_pred             HHHHHHHhHHHHHHhhHHHHHHHHHHHHHHH
Confidence            7777777777777777777766666666555

>PRK10884 SH3 domain-containing protein; Provisional

Probab=91.22  E-value=1.9  Score=39.82  Aligned_cols=28  Identities=11%  Similarity=-0.089  Sum_probs=13.2

Q ss_pred             HHHHHHHHHhhHHHHHHHHHHHHHHHHH
Q 021727          178 NAVALRKQSEGFLFEYDRLLEENQNLRN  205 (308)
Q Consensus       178 d~eaLKKQae~L~kEYDRL~eE~~kLq~  205 (308)
                      +.+.|++|.+.++++-|.|..+++.+++
T Consensus       140 ~n~~L~~~l~~~~~~~~~l~~~~~~~~~  167 (206)
T PRK10884        140 ENQKLKNQLIVAQKKVDAANLQLDDKQR  167 (206)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3444444444444444444444444443

>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function

Probab=91.18  E-value=5.2  Score=37.24  Aligned_cols=56  Identities=20%  Similarity=0.217  Sum_probs=36.6

Q ss_pred             HHHHhHHHhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhHHHHHHHHHH
Q 021727          143 EIKALEDQMTTLKLKLKDLESELETKSKEANAAETNAVALRKQSEGFLFEYDRLLE  198 (308)
Q Consensus       143 e~~~~~~e~~~l~~evekLk~eLk~k~kel~kae~d~eaLKKQae~L~kEYDRL~e  198 (308)
                      +...+..++..+..+++.|+...+..++.+...+.+++.|+.|.+++..-...+..
T Consensus        50 e~~~L~~e~~~l~~e~e~L~~~~~~l~~~v~~q~~el~~L~~qi~~~~~~~~~l~p  105 (251)
T PF11932_consen   50 EKQELLAEYRQLEREIENLEVYNEQLERQVASQEQELASLEQQIEQIEETRQELVP  105 (251)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34455556666667777777777777777777777777777777776655544444

However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.

>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association []

Probab=90.96  E-value=2.5  Score=41.02  Aligned_cols=8  Identities=13%  Similarity=0.027  Sum_probs=4.1

Q ss_pred             HHHHHHHh
Q 021727           59 SVYNIMMI   66 (308)
Q Consensus        59 Sirrm~K~   66 (308)
                      +.+++.++
T Consensus        76 ~c~EL~~~   83 (325)
T PF08317_consen   76 SCRELKKY   83 (325)
T ss_pred             HHHHHHHH
Confidence            55555444

>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion

Probab=90.88  E-value=7.1  Score=34.43  Aligned_cols=57  Identities=19%  Similarity=0.320  Sum_probs=42.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhHHHHHHHHHHHHHHHHHhHh
Q 021727          152 TTLKLKLKDLESELETKSKEANAAETNAVALRKQSEGFLFEYDRLLEENQNLRNQLQ  208 (308)
Q Consensus       152 ~~l~~evekLk~eLk~k~kel~kae~d~eaLKKQae~L~kEYDRL~eE~~kLq~~l~  208 (308)
                      +...++++.++...+...++.....++....+.+++.+..++.++.++++.+++.++
T Consensus       126 ~~~~~~l~~l~~~~~~~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~  182 (191)
T PF04156_consen  126 KSVEERLDSLDESIKELEKEIRELQKELQDSREEVQELRSQLERLQENLQQLEEKIQ  182 (191)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            345566777777777777777776667777778888888888888888887776665

The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].

>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD

Probab=90.86  E-value=3.1  Score=43.93  Aligned_cols=27  Identities=15%  Similarity=0.298  Sum_probs=19.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhccccc
Q 021727          107 DRLHHYIRELRIRRKTMEAIKNQSRGF  133 (308)
Q Consensus       107 ~Rl~sLI~eLa~le~~~ealkKQa~~a  133 (308)
                      .++..++.++..++.+++.+.++...+
T Consensus       391 ~~~~~~~~~~~~~e~el~~l~~~l~~~  417 (650)
T TIGR03185       391 DAKSQLLKELRELEEELAEVDKKISTI  417 (650)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence            566777777777888777777765543

This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.

>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]

Probab=90.60  E-value=2.3  Score=40.30  Aligned_cols=30  Identities=17%  Similarity=0.223  Sum_probs=14.1

Q ss_pred             hHHHHHHHHHhhHHHHHHHHHHHHHHHHHh
Q 021727          177 TNAVALRKQSEGFLFEYDRLLEENQNLRNQ  206 (308)
Q Consensus       177 ~d~eaLKKQae~L~kEYDRL~eE~~kLq~~  206 (308)
                      .+++++|.+...+..|-.+|+++.++++++
T Consensus        96 ~E~~~ak~r~~~le~el~~l~~~~~~l~~~  125 (239)
T COG1579          96 IEIQIAKERINSLEDELAELMEEIEKLEKE  125 (239)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344444444444444444444444444433

>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]

Probab=90.59  E-value=8.1  Score=33.79  Aligned_cols=29  Identities=17%  Similarity=0.279  Sum_probs=18.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhccccccc
Q 021727          107 DRLHHYIRELRIRRKTMEAIKNQSRGFED  135 (308)
Q Consensus       107 ~Rl~sLI~eLa~le~~~ealkKQa~~a~~  135 (308)
                      +++-++=++|...+++.+.+..+++++++
T Consensus        24 ~~v~~LEreLe~~q~~~e~~~~daEn~k~   52 (140)
T PF10473_consen   24 DHVESLERELEMSQENKECLILDAENSKA   52 (140)
T ss_pred             HHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence            45566666777777777777666665543

There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding

>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT)

Probab=90.57  E-value=7.4  Score=32.97  Aligned_cols=55  Identities=25%  Similarity=0.352  Sum_probs=33.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhh----hHHHHHHHHHhhHHHHHHHHHHHHHHHHHhHhh
Q 021727          155 KLKLKDLESELETKSKEANAAE----TNAVALRKQSEGFLFEYDRLLEENQNLRNQLQS  209 (308)
Q Consensus       155 ~~evekLk~eLk~k~kel~kae----~d~eaLKKQae~L~kEYDRL~eE~~kLq~~l~~  209 (308)
                      ..++..|+.+.+.....+...+    .....|.++.+.+..-++.|.+.|.-|.+|++.
T Consensus        72 ~~~~~~l~~~~~~a~~~l~~~e~sw~~qk~~le~e~~~~~~r~~dL~~QN~lLh~QlE~  130 (132)
T PF07926_consen   72 QQEINELKAEAESAKAELEESEASWEEQKEQLEKELSELEQRIEDLNEQNKLLHDQLES  130 (132)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            3334444444444444443332    234567778888888888888888778888764

These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore

>PF05266 DUF724: Protein of unknown function (DUF724); InterPro: IPR007930 This family contains several uncharacterised proteins found exclusively in Arabidopsis thaliana

Probab=90.57  E-value=9.8  Score=34.69  Aligned_cols=12  Identities=0%  Similarity=0.022  Sum_probs=6.0

Q ss_pred             HHHHHHHHHHHh
Q 021727           55 MLISSVYNIMMI   66 (308)
Q Consensus        55 LFlDSirrm~K~   66 (308)
                      .|++.+..+.+.
T Consensus        51 ~f~~l~e~v~~l   62 (190)
T PF05266_consen   51 TFANLAEKVKKL   62 (190)
T ss_pred             HHHHHHHHHHHc
Confidence            455555544443

>PF13851 GAS: Growth-arrest specific micro-tubule binding

Probab=90.44  E-value=3.9  Score=37.36  Aligned_cols=13  Identities=15%  Similarity=0.442  Sum_probs=5.3

Q ss_pred             HHHHHHHHHHHHH
Q 021727          155 KLKLKDLESELET  167 (308)
Q Consensus       155 ~~evekLk~eLk~  167 (308)
                      ..++++|+.++..
T Consensus        68 ~~e~~eL~k~L~~   80 (201)
T PF13851_consen   68 EEEVEELRKQLKN   80 (201)
T ss_pred             HHHHHHHHHHHHH
Confidence            3344444444433

>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=90.19  E-value=4.1  Score=39.18  Aligned_cols=41  Identities=15%  Similarity=0.388  Sum_probs=19.9

Q ss_pred             HHhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhH
Q 021727          149 DQMTTLKLKLKDLESELETKSKEANAAETNAVALRKQSEGF  189 (308)
Q Consensus       149 ~e~~~l~~evekLk~eLk~k~kel~kae~d~eaLKKQae~L  189 (308)
                      .+++.+..+++++..++++.++++.+.+.+++.++++++.+
T Consensus        52 ~ei~~L~~qi~~~~~k~~~~~~~i~~~~~eik~l~~eI~~~   92 (265)
T COG3883          52 NEIESLDNQIEEIQSKIDELQKEIDQSKAEIKKLQKEIAEL   92 (265)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34444445555555555555554444444444444444444

>PRK10884 SH3 domain-containing protein; Provisional

Probab=90.16  E-value=3.4  Score=38.10  Aligned_cols=23  Identities=13%  Similarity=0.091  Sum_probs=9.6

Q ss_pred             HHHhhHHHHHHHHHHHHHHHHHh
Q 021727          184 KQSEGFLFEYDRLLEENQNLRNQ  206 (308)
Q Consensus       184 KQae~L~kEYDRL~eE~~kLq~~  206 (308)
                      ++.++|..|+++|.++++.++++
T Consensus       132 ~~~~~L~~~n~~L~~~l~~~~~~  154 (206)
T PRK10884        132 SVINGLKEENQKLKNQLIVAQKK  154 (206)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHH
Confidence            33333444444444444444433

>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells

Probab=90.01  E-value=4.2  Score=39.60  Aligned_cols=11  Identities=27%  Similarity=0.368  Sum_probs=2.7

Q ss_pred             ccccCccceee
Q 021727          214 LSHSDFRTVYW  224 (308)
Q Consensus       214 ~s~~~~k~~~~  224 (308)
                      +-+.++.+|=|
T Consensus       158 LGrl~~~~V~W  168 (314)
T PF04111_consen  158 LGRLPNVPVEW  168 (314)
T ss_dssp             E--BTTB---H
T ss_pred             eccCCCCCCCh
Confidence            33444444555

In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.

>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes

Probab=89.99  E-value=3.6  Score=44.36  Aligned_cols=64  Identities=25%  Similarity=0.300  Sum_probs=43.8

Q ss_pred             HhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHH-HhhHHHHHHHHHHHHHHHHHhHhhccccc
Q 021727          150 QMTTLKLKLKDLESELETKSKEANAAETNAVALRKQ-SEGFLFEYDRLLEENQNLRNQLQSLDWRL  214 (308)
Q Consensus       150 e~~~l~~evekLk~eLk~k~kel~kae~d~eaLKKQ-ae~L~kEYDRL~eE~~kLq~~l~~~d~~~  214 (308)
                      ...++..|+++|+.||+.+++++...|.++..|+++ -| -++|=+-|+....-+|++-+.-+..+
T Consensus       546 r~~~lE~E~~~lr~elk~kee~~~~~e~~~~~lr~~~~e-~~~~~e~L~~aL~amqdk~~~LE~sL  610 (697)
T PF09726_consen  546 RRRQLESELKKLRRELKQKEEQIRELESELQELRKYEKE-SEKDTEVLMSALSAMQDKNQHLENSL  610 (697)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-hhhhHHHHHHHHHHHHHHHHHHHHhh
Confidence            344566778888888888888888888888888876 33 44556666666666666655555544

; GO: 0016021 integral to membrane

>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells

Probab=89.65  E-value=3  Score=37.48  Aligned_cols=22  Identities=23%  Similarity=0.421  Sum_probs=9.1

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHH
Q 021727          151 MTTLKLKLKDLESELETKSKEA  172 (308)
Q Consensus       151 ~~~l~~evekLk~eLk~k~kel  172 (308)
                      +..+..++..|+.+++..+.++
T Consensus       118 l~~l~~~~~~L~~~~~~l~~~l  139 (194)
T PF08614_consen  118 LAELEAELAQLEEKIKDLEEEL  139 (194)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHH
Confidence            3334444444444444444433

In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.

>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]

Probab=89.38  E-value=6.2  Score=34.51  Aligned_cols=41  Identities=32%  Similarity=0.338  Sum_probs=21.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhHHHHH
Q 021727          153 TLKLKLKDLESELETKSKEANAAETNAVALRKQSEGFLFEY  193 (308)
Q Consensus       153 ~l~~evekLk~eLk~k~kel~kae~d~eaLKKQae~L~kEY  193 (308)
                      ..+.+++.|+.++.....++...+.++.++++.-+++.++-
T Consensus        49 n~k~eie~L~~el~~lt~el~~L~~EL~~l~sEk~~L~k~l   89 (140)
T PF10473_consen   49 NSKAEIETLEEELEELTSELNQLELELDTLRSEKENLDKEL   89 (140)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33445555555555555555555555555555444444333

There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding

>PRK12704 phosphodiesterase; Provisional

Probab=89.37  E-value=9.8  Score=39.64  Aligned_cols=28  Identities=21%  Similarity=0.167  Sum_probs=12.1

Q ss_pred             HHHhhhHHHHHHHHHhhHHHHHHHHHHH
Q 021727          172 ANAAETNAVALRKQSEGFLFEYDRLLEE  199 (308)
Q Consensus       172 l~kae~d~eaLKKQae~L~kEYDRL~eE  199 (308)
                      |...+++++..+++.+...++|+++.++
T Consensus       112 L~~re~~Le~re~eLe~~~~~~~~~~~~  139 (520)
T PRK12704        112 LEKKEKELEQKQQELEKKEEELEELIEE  139 (520)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3333334444444444444444444443

>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells

Probab=89.24  E-value=3.4  Score=40.23  Aligned_cols=8  Identities=25%  Similarity=0.497  Sum_probs=3.8

Q ss_pred             HHHHHHhh
Q 021727          258 LLVLAAVS  265 (308)
Q Consensus       258 ~~~~~~~~  265 (308)
                      .|+|..+.
T Consensus       179 ~LLL~~la  186 (314)
T PF04111_consen  179 ALLLQTLA  186 (314)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            44554443

In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.

>PF05483 SCP-1: Synaptonemal complex protein 1 (SCP-1); InterPro: IPR008827 Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex

Probab=88.89  E-value=3.5  Score=44.35  Aligned_cols=42  Identities=24%  Similarity=0.243  Sum_probs=32.6

Q ss_pred             hhHHHHHHHHHhhHHHHHHHHHHHHHHHHHhHhhcccccccc
Q 021727          176 ETNAVALRKQSEGFLFEYDRLLEENQNLRNQLQSLDWRLSHS  217 (308)
Q Consensus       176 e~d~eaLKKQae~L~kEYDRL~eE~~kLq~~l~~~d~~~s~~  217 (308)
                      ++....|+||.++-.+-.+.|..++.-|+++....+++.+..
T Consensus       593 enk~~~LrKqvEnk~K~ieeLqqeNk~LKKk~~aE~kq~~~~  634 (786)
T PF05483_consen  593 ENKCNNLRKQVENKNKNIEELQQENKALKKKITAESKQSNVY  634 (786)
T ss_pred             HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            444678888888888888888888888888888877777543

Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase [].; GO: 0007130 synaptonemal complex assembly, 0000795 synaptonemal complex

>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch

Probab=88.47  E-value=11  Score=32.39  Aligned_cols=48  Identities=17%  Similarity=0.282  Sum_probs=20.6

Q ss_pred             HHHHHHHHHHHHHHHhhhHHHHHHHHHhhHHHHHH----HHHHHHHHHHHhH
Q 021727          160 DLESELETKSKEANAAETNAVALRKQSEGFLFEYD----RLLEENQNLRNQL  207 (308)
Q Consensus       160 kLk~eLk~k~kel~kae~d~eaLKKQae~L~kEYD----RL~eE~~kLq~~l  207 (308)
                      .++.+++.....++..+.++.-++..+.+...-|.    |---|+++|++++
T Consensus        98 ~l~~~~~~~~~~~k~~kee~~klk~~~~~~~tq~~~e~rkke~E~~kLk~rL  149 (151)
T PF11559_consen   98 QLQKQLKSLEAKLKQEKEELQKLKNQLQQRKTQYEHELRKKEREIEKLKERL  149 (151)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            33333443333333444444444444444433333    3333455566554

pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.

>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT)

Probab=88.28  E-value=5.8  Score=41.73  Aligned_cols=48  Identities=23%  Similarity=0.308  Sum_probs=19.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhHHHHHHHHHHHHH
Q 021727          154 LKLKLKDLESELETKSKEANAAETNAVALRKQSEGFLFEYDRLLEENQ  201 (308)
Q Consensus       154 l~~evekLk~eLk~k~kel~kae~d~eaLKKQae~L~kEYDRL~eE~~  201 (308)
                      |.++++.|+.+++..+.+|...+.+.+.|+.|.+.+......+..|++
T Consensus       162 Le~e~~~l~~~v~~l~~eL~~~~ee~e~L~~~~kel~~~~e~l~~E~~  209 (546)
T PF07888_consen  162 LEEEVEQLREEVERLEAELEQEEEEMEQLKQQQKELTESSEELKEERE  209 (546)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            333333344444444444434434444444444444444433333333

This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].

>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking

Probab=88.21  E-value=10  Score=34.99  Aligned_cols=16  Identities=19%  Similarity=0.136  Sum_probs=6.1

Q ss_pred             HHHhhHHHHHHHHHHH
Q 021727          184 KQSEGFLFEYDRLLEE  199 (308)
Q Consensus       184 KQae~L~kEYDRL~eE  199 (308)
                      ++.+....+..+....
T Consensus       119 ~~~~~~~~~~~~~~~~  134 (302)
T PF10186_consen  119 EQLEELQNELEERKQR  134 (302)
T ss_pred             HHHHHHHHHHHHHHHH
Confidence            3333343344333333

In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy

>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type

Probab=88.04  E-value=7.8  Score=42.26  Aligned_cols=47  Identities=19%  Similarity=0.229  Sum_probs=22.7

Q ss_pred             HHHHHHHHHHHHhhhHHHHHHHHHhhHHHHHHHHHHHHHHHHHhHhh
Q 021727          163 SELETKSKEANAAETNAVALRKQSEGFLFEYDRLLEENQNLRNQLQS  209 (308)
Q Consensus       163 ~eLk~k~kel~kae~d~eaLKKQae~L~kEYDRL~eE~~kLq~~l~~  209 (308)
                      .+++....++...+.+++.++++.+.+..++..+..+...++..+..
T Consensus       316 ~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~  362 (1179)
T TIGR02168       316 RQLEELEAQLEELESKLDELAEELAELEEKLEELKEELESLEAELEE  362 (1179)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33333333333444444455555555555555555555555555543

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.

>PF10481 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR018463 Mitosin or centromere-associated protein-F (Cenp-F) is found bound across the centromere as one of the proteins of the outer layer of the kinetochore []

Probab=87.94  E-value=8.3  Score=37.46  Aligned_cols=83  Identities=23%  Similarity=0.186  Sum_probs=60.6

Q ss_pred             HHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhHHHHHHHHHHHHHHHHHhHhhcccccc-ccCccceeeccccccccccch
Q 021727          158 LKDLESELETKSKEANAAETNAVALRKQSEGFLFEYDRLLEENQNLRNQLQSLDWRLS-HSDFRTVYWNAEKTASSTYCA  236 (308)
Q Consensus       158 vekLk~eLk~k~kel~kae~d~eaLKKQae~L~kEYDRL~eE~~kLq~~l~~~d~~~s-~~~~k~~~~~~~~~~~~~~~~  236 (308)
                      -++|..++..++-.+.-.+..+..-|+|.+.|+.|--|+..|.++.|.....+|-.++ .+..-|+|-..- |.+-.|-.
T Consensus        83 rqKlshdlq~Ke~qv~~lEgQl~s~Kkqie~Leqelkr~KsELErsQ~~~~~~~~sl~~~stpqk~f~~p~-tp~q~~~~  161 (307)
T PF10481_consen   83 RQKLSHDLQVKESQVNFLEGQLNSCKKQIEKLEQELKRCKSELERSQQAASSGDVSLNPCSTPQKSFATPL-TPSQYYSD  161 (307)
T ss_pred             HHHhhHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCccccccCCchhhccCCC-Chhhhhhh
Confidence            3456777777777777778888999999999999999999999999888887776533 334455776433 66655655


Q ss_pred             hhhhh
Q 021727          237 AKVLD  241 (308)
Q Consensus       237 ~~~~~  241 (308)
                      +|.=+
T Consensus       162 sk~e~  166 (307)
T PF10481_consen  162 SKYEE  166 (307)
T ss_pred             hhHHH
Confidence            55443

Most of the kinetochore/centromere functions appear to depend upon binding of the C-terminal part of the molecule, whereas the N-terminal part, here, may be a cytoplasmic player in controlling the function of microtubules and dynein [].

>PHA02562 46 endonuclease subunit; Provisional

Probab=87.67  E-value=6.7  Score=39.94  Aligned_cols=51  Identities=16%  Similarity=0.099  Sum_probs=24.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhHHHHHHHHHHHHHHHHHh
Q 021727          156 LKLKDLESELETKSKEANAAETNAVALRKQSEGFLFEYDRLLEENQNLRNQ  206 (308)
Q Consensus       156 ~evekLk~eLk~k~kel~kae~d~eaLKKQae~L~kEYDRL~eE~~kLq~~  206 (308)
                      .++.+.+..+....++....+.+++.|..+.+.+..+..++.++..+++..
T Consensus       344 ~~i~~~~~~i~~~~~~~~~l~~ei~~l~~~~~~~~~~l~~l~~~l~~~~~~  394 (562)
T PHA02562        344 NKISTNKQSLITLVDKAKKVKAAIEELQAEFVDNAEELAKLQDELDKIVKT  394 (562)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhchHHHHHHHHHHHHHHHHH
Confidence            333334444444444444445555555555555555555555555544443

>PF10234 Cluap1: Clusterin-associated protein-1; InterPro: IPR019366 This protein of 413 amino acids contains a central coiled-coil domain, possibly the region that binds to clusterin

Probab=87.42  E-value=5.7  Score=38.20  Aligned_cols=51  Identities=29%  Similarity=0.423  Sum_probs=28.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhHHHHHHHHHHHHHHH
Q 021727          153 TLKLKLKDLESELETKSKEANAAETNAVALRKQSEGFLFEYDRLLEENQNL  203 (308)
Q Consensus       153 ~l~~evekLk~eLk~k~kel~kae~d~eaLKKQae~L~kEYDRL~eE~~kL  203 (308)
                      .+..+...|+..++.++.|+.++++-+++|++===..-.||++|-+|.+++
T Consensus       187 ~l~~de~~Le~KIekkk~ELER~qKRL~sLq~vRPAfmdEyEklE~EL~~l  237 (267)
T PF10234_consen  187 NLASDEANLEAKIEKKKQELERNQKRLQSLQSVRPAFMDEYEKLEEELQKL  237 (267)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHH
Confidence            334444455555555555555555555555544444456777777766543

Cluap1 expression is highest in the nucleus and gradually increases during late S to G2/M phases of the cell cycle and returns to the basal level in the G0/G1 phases. In addition, it is upregulated in colon cancer tissues compared to corresponding non-cancerous mucosa. It thus plays a crucial role in the life of the cell [].

>PF09738 DUF2051: Double stranded RNA binding protein (DUF2051); InterPro: IPR019139 This entry represents transcriptional repressors which preferentially bind to the GC-rich consensus sequence (5'-AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA

Probab=87.33  E-value=11  Score=36.95  Aligned_cols=95  Identities=19%  Similarity=0.162  Sum_probs=62.7

Q ss_pred             HHHHHHHHHHHHHHHhcccccccccccchHHHHHhHHHhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhHHHH
Q 021727          113 IRELRIRRKTMEAIKNQSRGFEDGKAASSEEIKALEDQMTTLKLKLKDLESELETKSKEANAAETNAVALRKQSEGFLFE  192 (308)
Q Consensus       113 I~eLa~le~~~ealkKQa~~a~~~~~~~~~e~~~~~~e~~~l~~evekLk~eLk~k~kel~kae~d~eaLKKQae~L~kE  192 (308)
                      =-.|..+++++..+|=....+.       +|...+.=+++.|+.++++++..+-.+.++......+++.+|.....+..|
T Consensus        83 k~~l~evEekyrkAMv~naQLD-------Nek~~l~yqvd~Lkd~lee~eE~~~~~~re~~eK~~elEr~K~~~d~L~~e  155 (302)
T PF09738_consen   83 KDSLAEVEEKYRKAMVSNAQLD-------NEKSALMYQVDLLKDKLEELEETLAQLQREYREKIRELERQKRAHDSLREE  155 (302)
T ss_pred             HHHHHHHHHHHHHHHHHHhhhc-------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3455666666655543322222       233344445666777777777777777777766667788888888888888


Q ss_pred             HHHHHHHHHHHHHhHhhccccc
Q 021727          193 YDRLLEENQNLRNQLQSLDWRL  214 (308)
Q Consensus       193 YDRL~eE~~kLq~~l~~~d~~~  214 (308)
                      .|.|.++.......++..+..+
T Consensus       156 ~~~Lre~L~~rdeli~khGlVl  177 (302)
T PF09738_consen  156 LDELREQLKQRDELIEKHGLVL  177 (302)
T ss_pred             HHHHHHHHHHHHHHHHHCCeee
Confidence            8888888766666666666555

They may control smooth muscle cell proliferation following artery injury through PDGFA repression and may also bind double-stranded RNA. They interact with the leucine-rich repeat domain of human flightless-I (FliI) protein.

>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT)

Probab=86.80  E-value=7.4  Score=40.96  Aligned_cols=44  Identities=20%  Similarity=0.253  Sum_probs=22.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhHHHHHHHH
Q 021727          153 TLKLKLKDLESELETKSKEANAAETNAVALRKQSEGFLFEYDRL  196 (308)
Q Consensus       153 ~l~~evekLk~eLk~k~kel~kae~d~eaLKKQae~L~kEYDRL  196 (308)
                      .+..|.+.|+.+.++....+..-+.++.+|..+.....++-+++
T Consensus       203 ~l~~E~~~L~~q~~e~~~ri~~LEedi~~l~qk~~E~e~~~~~l  246 (546)
T PF07888_consen  203 ELKEERESLKEQLAEARQRIRELEEDIKTLTQKEKEQEKELDKL  246 (546)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34444445555555555555555556666655553333333333

This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].

>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences

Probab=86.62  E-value=4.7  Score=35.30  Aligned_cols=61  Identities=23%  Similarity=0.365  Sum_probs=31.8

Q ss_pred             HHHhHHHhHHHHHHHHHHHHHHHHHHHHHHHhhhHH--HHHHHHHhhHHHHHHHHHHHHHHHH
Q 021727          144 IKALEDQMTTLKLKLKDLESELETKSKEANAAETNA--VALRKQSEGFLFEYDRLLEENQNLR  204 (308)
Q Consensus       144 ~~~~~~e~~~l~~evekLk~eLk~k~kel~kae~d~--eaLKKQae~L~kEYDRL~eE~~kLq  204 (308)
                      ...++.++..+++++..|+.+++.++.++....+..  +.|..+.+.+..|-..+.+..+.|+
T Consensus        74 l~~ld~ei~~L~~el~~l~~~~k~l~~eL~~L~~~~t~~el~~~i~~l~~e~~~l~~kL~~l~  136 (169)
T PF07106_consen   74 LAELDAEIKELREELAELKKEVKSLEAELASLSSEPTNEELREEIEELEEEIEELEEKLEKLR  136 (169)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344444555555555555555555555554433322  3455555555555555555555544

TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].

>PF12777 MT: Microtubule-binding stalk of dynein motor; InterPro: IPR024743 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases

Probab=86.26  E-value=0.83  Score=44.66  Aligned_cols=32  Identities=19%  Similarity=0.190  Sum_probs=14.5

Q ss_pred             HHHHhHHHHHHHH-HHHHHHHHHHHHHHHHHHH
Q 021727           93 ATLMGASLFLAFM-IDRLHHYIRELRIRRKTME  124 (308)
Q Consensus        93 aYISGFsLFL~LV-I~Rl~sLI~eLa~le~~~e  124 (308)
                      +...+-.|+.|.. +...+.+.....-++..++
T Consensus       192 ~S~Aa~~Lc~WV~A~~~Y~~v~~~V~P~~~~l~  224 (344)
T PF12777_consen  192 ASKAAGSLCKWVRAMVKYYEVNKEVEPKRQKLE  224 (344)
T ss_dssp             H-TTHHHHHHHHHHHHHHHHHCCCCCHHHHHHH
T ss_pred             HhhcchHHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence            4555566666632 3334444444444444333

The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules (D1-6), of which four correspond to the ATP binding sites with P-loop signatures, and two are modules in which the P loop has been lost in evolution. This domain occurs between D4 and D5 and includes the two predicted alpha-helical coiled coil segments that form the stalk supporting the ATP-sensitive microtubule binding component [].; PDB: 3VKH_A 3VKG_A 3ERR_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 2RR7_A.

>COG3879 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=86.12  E-value=17  Score=34.68  Aligned_cols=31  Identities=19%  Similarity=0.368  Sum_probs=18.5

Q ss_pred             HhHHHhHHHHHHHHHHHHHHHHHHHHHHHhh
Q 021727          146 ALEDQMTTLKLKLKDLESELETKSKEANAAE  176 (308)
Q Consensus       146 ~~~~e~~~l~~evekLk~eLk~k~kel~kae  176 (308)
                      .+.+++.++.++..+|+.|++..++.+.+.+
T Consensus        54 ~L~~e~~s~Q~~~~~L~~ev~~~~~~~~s~~   84 (247)
T COG3879          54 DLVKELRSLQKKVNTLAAEVEDLENKLDSVR   84 (247)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3444555566666667777776666555444

>smart00787 Spc7 Spc7 kinetochore protein

Probab=86.01  E-value=9  Score=37.45  Aligned_cols=32  Identities=9%  Similarity=0.200  Sum_probs=13.2

Q ss_pred             hHHHHHHHHHhhHHHHHHHHHHHHHHHHHhHh
Q 021727          177 TNAVALRKQSEGFLFEYDRLLEENQNLRNQLQ  208 (308)
Q Consensus       177 ~d~eaLKKQae~L~kEYDRL~eE~~kLq~~l~  208 (308)
                      ++++.++.|.+.+...-....++.+.++.+++
T Consensus       225 ~~l~e~~~~l~~l~~~I~~~~~~k~e~~~~I~  256 (312)
T smart00787      225 KKLEELEEELQELESKIEDLTNKKSELNTEIA  256 (312)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33344444444444444444444444444443

This domain is found in cell division proteins which are required for kinetochore-spindle association.

>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope

Probab=85.85  E-value=22  Score=33.63  Aligned_cols=26  Identities=12%  Similarity=0.266  Sum_probs=16.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhc
Q 021727          104 FMIDRLHHYIRELRIRRKTMEAIKNQ  129 (308)
Q Consensus       104 LVI~Rl~sLI~eLa~le~~~ealkKQ  129 (308)
                      =.|.||..|=.+...++.....+...
T Consensus        15 ~YIekVr~LE~~N~~Le~~i~~~~~~   40 (312)
T PF00038_consen   15 SYIEKVRFLEQENKRLESEIEELREK   40 (312)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHH----
T ss_pred             HHHHHHHHHHHHhhhhHHHHHHHHhc
Confidence            35778888888888888777766554

They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....

>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]

Probab=85.47  E-value=7.5  Score=43.97  Aligned_cols=39  Identities=31%  Similarity=0.280  Sum_probs=17.5

Q ss_pred             HHHHHHHHHHHhhhHHHHHHHHHhhHHHHHHHHHHHHHH
Q 021727          164 ELETKSKEANAAETNAVALRKQSEGFLFEYDRLLEENQN  202 (308)
Q Consensus       164 eLk~k~kel~kae~d~eaLKKQae~L~kEYDRL~eE~~k  202 (308)
                      +++....++...+..++.++.+...+..+|.++.++...
T Consensus       440 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  478 (1163)
T COG1196         440 ELEELNEELEELEEQLEELRDRLKELERELAELQEELQR  478 (1163)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            333333344444444444444445555555544444433

>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells

Probab=85.44  E-value=6.6  Score=34.09  Aligned_cols=23  Identities=30%  Similarity=0.468  Sum_probs=10.0

Q ss_pred             HhHHHHHHHHHHHHHHHHHHHHH
Q 021727          150 QMTTLKLKLKDLESELETKSKEA  172 (308)
Q Consensus       150 e~~~l~~evekLk~eLk~k~kel  172 (308)
                      +|..|..++..|+.+++.....+
T Consensus        36 EI~sL~~K~~~lE~eld~~~~~l   58 (143)
T PF12718_consen   36 EITSLQKKNQQLEEELDKLEEQL   58 (143)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHH
Confidence            44444444444444444444433

In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].

>PF07407 Seadorna_VP6: Seadornavirus VP6 protein; InterPro: IPR009982 This family consists of several VP6 proteins from the Banna virus as well as a related protein VP5 from the Kadipiro virus

Probab=85.24  E-value=3.3  Score=41.18  Aligned_cols=56  Identities=18%  Similarity=0.105  Sum_probs=42.4

Q ss_pred             hHHHHHhHHHhHHHHHHHHHHHHHHHHHHHHHHH--hhhHHHHHHHHHhhHHHHHHHH
Q 021727          141 SEEIKALEDQMTTLKLKLKDLESELETKSKEANA--AETNAVALRKQSEGFLFEYDRL  196 (308)
Q Consensus       141 ~~e~~~~~~e~~~l~~evekLk~eLk~k~kel~k--ae~d~eaLKKQae~L~kEYDRL  196 (308)
                      .+|.-.+..||.+|++|+++|+.|++..+.+..+  ...+.+++..|++.+.+--|+.
T Consensus        31 ~~e~~aLr~EN~~LKkEN~~Lk~eVerLE~e~l~s~V~E~vet~dv~~d~i~Kimnk~   88 (420)
T PF07407_consen   31 IDENFALRMENHSLKKENNDLKIEVERLENEMLRSHVCEDVETNDVIYDKIVKIMNKM   88 (420)
T ss_pred             hhhhhhHHHHhHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHH
Confidence            4566678889999999999999999988877765  3455666777777777777764

Members of this family are typically of around 420 residues in length. The function of this family is unknown.

>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]

Probab=84.82  E-value=13  Score=39.14  Aligned_cols=30  Identities=20%  Similarity=0.284  Sum_probs=23.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhccccc
Q 021727          104 FMIDRLHHYIRELRIRRKTMEAIKNQSRGF  133 (308)
Q Consensus       104 LVI~Rl~sLI~eLa~le~~~ealkKQa~~a  133 (308)
                      -.=+|+..||....-|+++...|..+..-+
T Consensus        46 ~LNDRLA~YIekVR~LEaqN~~L~~di~~l   75 (546)
T KOG0977|consen   46 ELNDRLAVYIEKVRFLEAQNRKLEHDINLL   75 (546)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            357888888888888888888887765533

>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences

Probab=84.65  E-value=4.9  Score=35.18  Aligned_cols=63  Identities=25%  Similarity=0.385  Sum_probs=52.9

Q ss_pred             hHHHhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH--hhHHHHHHHHHHHHHHHHHhHhh
Q 021727          147 LEDQMTTLKLKLKDLESELETKSKEANAAETNAVALRKQS--EGFLFEYDRLLEENQNLRNQLQS  209 (308)
Q Consensus       147 ~~~e~~~l~~evekLk~eLk~k~kel~kae~d~eaLKKQa--e~L~kEYDRL~eE~~kLq~~l~~  209 (308)
                      ..+++..+..++.+|+.++...+.+.+..++++..|.++-  +.+...-..|.+|...++.+++.
T Consensus        70 s~eel~~ld~ei~~L~~el~~l~~~~k~l~~eL~~L~~~~t~~el~~~i~~l~~e~~~l~~kL~~  134 (169)
T PF07106_consen   70 SPEELAELDAEIKELREELAELKKEVKSLEAELASLSSEPTNEELREEIEELEEEIEELEEKLEK  134 (169)
T ss_pred             CchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4567778888899999999999999888888888888886  66788888888888888888774

TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].

>PF12329 TMF_DNA_bd: TATA element modulatory factor 1 DNA binding; InterPro: IPR022092 This is the middle region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes that contains at its N-terminal section a number of leucine zippers that could potentially form coiled coil structures

Probab=84.62  E-value=9.3  Score=29.66  Aligned_cols=19  Identities=26%  Similarity=0.287  Sum_probs=8.3

Q ss_pred             HHHHHHHHHhhHHHHHHHH
Q 021727          178 NAVALRKQSEGFLFEYDRL  196 (308)
Q Consensus       178 d~eaLKKQae~L~kEYDRL  196 (308)
                      ++..++++.+....+.+.|
T Consensus        48 ~~~~l~~~~~~~e~~~~~l   66 (74)
T PF12329_consen   48 QIKELKKKLEELEKELESL   66 (74)
T ss_pred             HHHHHHHHHHHHHHHHHHH
Confidence            3444444444444444443

The whole proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant [] cells.

>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells

Probab=84.43  E-value=28  Score=32.25  Aligned_cols=56  Identities=23%  Similarity=0.337  Sum_probs=43.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhHHHHHHHHHHHHHHHHHhHh
Q 021727          153 TLKLKLKDLESELETKSKEANAAETNAVALRKQSEGFLFEYDRLLEENQNLRNQLQ  208 (308)
Q Consensus       153 ~l~~evekLk~eLk~k~kel~kae~d~eaLKKQae~L~kEYDRL~eE~~kLq~~l~  208 (308)
                      ....++..|+..++........++..+..|.++.+.+..+.+...++|..++..++
T Consensus       173 ~~e~~i~~L~~~lkeaE~Rae~aE~~v~~Le~~id~le~eL~~~k~~~~~~~~eld  228 (237)
T PF00261_consen  173 EYEEKIRDLEEKLKEAENRAEFAERRVKKLEKEIDRLEDELEKEKEKYKKVQEELD  228 (237)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34456777888888777777778888888888888888888888888887777764

In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....

>PF05266 DUF724: Protein of unknown function (DUF724); InterPro: IPR007930 This family contains several uncharacterised proteins found exclusively in Arabidopsis thaliana

Probab=84.34  E-value=21  Score=32.58  Aligned_cols=20  Identities=10%  Similarity=-0.027  Sum_probs=11.3

Q ss_pred             hHHHHHHHHHHHHHHHHHHH
Q 021727           44 VVKTVAGTVLVMLISSVYNI   63 (308)
Q Consensus        44 ~~~iv~~~l~vLFlDSirrm   63 (308)
                      +..+...+.++-++|+|+.+
T Consensus        43 g~A~Glm~~f~~l~e~v~~l   62 (190)
T PF05266_consen   43 GMAVGLMVTFANLAEKVKKL   62 (190)
T ss_pred             HHHHHHHHHHHHHHHHHHHc
Confidence            44444455566666666665

>PF14235 DUF4337: Domain of unknown function (DUF4337)

Probab=84.16  E-value=7.6  Score=34.34  Aligned_cols=44  Identities=16%  Similarity=0.178  Sum_probs=33.5

Q ss_pred             HHHHHHHHHHHHHHHHhhhHHHHHHHHHhhHHHHHHHHHHHHHH
Q 021727          159 KDLESELETKSKEANAAETNAVALRKQSEGFLFEYDRLLEENQN  202 (308)
Q Consensus       159 ekLk~eLk~k~kel~kae~d~eaLKKQae~L~kEYDRL~eE~~k  202 (308)
                      +.++++++.-+++.++-+.+.+.|.+|++..+.++|+++..|+.
T Consensus        69 ~~~~~~i~~Y~~~~~~~~~e~~~l~~~A~~~e~~~d~~~~~~~~  112 (157)
T PF14235_consen   69 AAYQKKIARYKKEKARYKSEAEELEAKAKEAEAESDHALHHHHR  112 (157)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhcccch
Confidence            44555555555555566667899999999999999999888775

>PF10211 Ax_dynein_light: Axonemal dynein light chain; InterPro: IPR019347 Axonemal dynein light chain proteins play a dynamic role in flagellar and cilial motility

Probab=83.37  E-value=35  Score=30.90  Aligned_cols=59  Identities=20%  Similarity=0.291  Sum_probs=29.0

Q ss_pred             HhHHHHHHHHHHHHHHHHHHHHHHHhhhHHH-HHHHHHhhHHHHHHHHHHHHHHHHHhHh
Q 021727          150 QMTTLKLKLKDLESELETKSKEANAAETNAV-ALRKQSEGFLFEYDRLLEENQNLRNQLQ  208 (308)
Q Consensus       150 e~~~l~~evekLk~eLk~k~kel~kae~d~e-aLKKQae~L~kEYDRL~eE~~kLq~~l~  208 (308)
                      ++..+..+.+.|+.++..........++..+ ......+....|.|-|...++.|.+++.
T Consensus       128 ~i~~L~~e~~~L~~~~~~l~~~~e~~ek~~~e~~~~~~k~~~~ei~~lk~~~~ql~~~l~  187 (189)
T PF10211_consen  128 EIEELEEEKEELEKQVQELKNKCEQLEKREEELRQEEEKKHQEEIDFLKKQNQQLKAQLE  187 (189)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            3334444444444444444433333322222 2333344456677777777777766654

Eukaryotic cilia and flagella are complex organelles consisting of a core structure, the axoneme, which is composed of nine microtubule doublets forming a cylinder that surrounds a pair of central singlet microtubules. This ultra-structural arrangement seems to be one of the most stable micro-tubular assemblies known and is responsible for the flagellar and ciliary movement of a large number of organisms ranging from protozoan to mammals. This light chain interacts directly with the N-terminal half of the heavy chains [].

>smart00503 SynN Syntaxin N-terminal domain

Probab=83.10  E-value=22  Score=28.37  Aligned_cols=30  Identities=17%  Similarity=0.297  Sum_probs=25.5

Q ss_pred             HHHHHHHHhhHHHHHHHHHHHHHHHHHhHh
Q 021727          179 AVALRKQSEGFLFEYDRLLEENQNLRNQLQ  208 (308)
Q Consensus       179 ~eaLKKQae~L~kEYDRL~eE~~kLq~~l~  208 (308)
                      --+.+-|.+.|.+++-.++.+|+..|..-.
T Consensus        84 ~r~~~~q~~~L~~~f~~~m~~fq~~Q~~~~  113 (117)
T smart00503       84 DRTRKAQTEKLRKKFKEVMNEFQRLQRKYR  113 (117)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            347788999999999999999999887654

Three-helix domain that (in Sso1p) slows the rate of its reaction with the SNAP-25 homologue Sec9p

>PRK12704 phosphodiesterase; Provisional

Probab=82.70  E-value=29  Score=36.22  Aligned_cols=42  Identities=21%  Similarity=0.136  Sum_probs=26.0

Q ss_pred             HHHHHHHHHHhhhHHHHHHHHHhhHHHHHHHHHHHHHHHHHh
Q 021727          165 LETKSKEANAAETNAVALRKQSEGFLFEYDRLLEENQNLRNQ  206 (308)
Q Consensus       165 Lk~k~kel~kae~d~eaLKKQae~L~kEYDRL~eE~~kLq~~  206 (308)
                      |+.+.++|.+.+.+++..++..+...++++...++.+++..+
T Consensus        98 Le~r~e~Lekke~eL~~re~~Le~re~eLe~~~~~~~~~~~~  139 (520)
T PRK12704         98 LDRKLELLEKREEELEKKEKELEQKQQELEKKEEELEELIEE  139 (520)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344444555556666666666777777777777777665433

>KOG1760 consensus Molecular chaperone Prefoldin, subunit 4 [Posttranslational modification, protein turnover, chaperones]

Probab=82.47  E-value=9.3  Score=33.02  Aligned_cols=31  Identities=13%  Similarity=0.200  Sum_probs=23.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhcccccccc
Q 021727          106 IDRLHHYIRELRIRRKTMEAIKNQSRGFEDG  136 (308)
Q Consensus       106 I~Rl~sLI~eLa~le~~~ealkKQa~~a~~~  136 (308)
                      |+++..+..+...+++..+..++|.+++..+
T Consensus        22 iN~Fsrl~~R~~~lk~dik~~k~~~enledA   52 (131)
T KOG1760|consen   22 INEFSRLNSRKDDLKADIKEAKTEIENLEDA   52 (131)
T ss_pred             HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Confidence            6666677777788888888888888777653

>KOG0999 consensus Microtubule-associated protein Bicaudal-D [Intracellular trafficking, secretion, and vesicular transport]

Probab=82.41  E-value=7.1  Score=41.35  Aligned_cols=90  Identities=26%  Similarity=0.343  Sum_probs=59.5

Q ss_pred             HhHHHHHHHHHHHHHHHHHHHHHHHh-------hhHHHHHHHHHhhHHHHHHHHHHHHHHHHHhHhhccccccccCccce
Q 021727          150 QMTTLKLKLKDLESELETKSKEANAA-------ETNAVALRKQSEGFLFEYDRLLEENQNLRNQLQSLDWRLSHSDFRTV  222 (308)
Q Consensus       150 e~~~l~~evekLk~eLk~k~kel~ka-------e~d~eaLKKQae~L~kEYDRL~eE~~kLq~~l~~~d~~~s~~~~k~~  222 (308)
                      +.+.++.||+.|-.++++...+..++       -.+..+||+|.+.++.+||-.-.|.++++..+...     ++.-||+
T Consensus         9 ~ve~lr~eierLT~el~q~t~e~~qaAeyGL~lLeeK~~Lkqq~eEleaeyd~~R~Eldqtkeal~q~-----~s~hkk~   83 (772)
T KOG0999|consen    9 EVEKLRQEIERLTEELEQTTEEKIQAAEYGLELLEEKEDLKQQLEELEAEYDLARTELDQTKEALGQY-----RSQHKKV   83 (772)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHh
Confidence            34457778888888887777665444       22568999999999999999999998888766532     2222333


Q ss_pred             eec---------cccccccccchhhhhhhhh
Q 021727          223 YWN---------AEKTASSTYCAAKVLDFEL  244 (308)
Q Consensus       223 ~~~---------~~~~~~~~~~~~~~~~~~~  244 (308)
                      --.         -|..|--+|.--|+++.+-
T Consensus        84 ~~~g~e~EesLLqESaakE~~yl~kI~elen  114 (772)
T KOG0999|consen   84 ARDGEEREESLLQESAAKEEYYLQKILELEN  114 (772)
T ss_pred             hccchhhHHHHHHHHHHhHHHHHHHHHHHHH
Confidence            221         2333445676677766653

>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation

Probab=82.34  E-value=7.6  Score=30.21  Aligned_cols=18  Identities=22%  Similarity=0.292  Sum_probs=7.4

Q ss_pred             HHhhHHHHHHHHHHHHHH
Q 021727          185 QSEGFLFEYDRLLEENQN  202 (308)
Q Consensus       185 Qae~L~kEYDRL~eE~~k  202 (308)
                      +-+.|..|..+|.+|++.
T Consensus        40 e~~~L~~en~~L~~e~~~   57 (72)
T PF06005_consen   40 ENEELKEENEQLKQERNA   57 (72)
T ss_dssp             HHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHH
Confidence            333334444444444443

It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.

>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]

Probab=82.31  E-value=29  Score=35.89  Aligned_cols=94  Identities=19%  Similarity=0.258  Sum_probs=42.2

Q ss_pred             HHHHHHHHHHHHHhcccccccccccchHHHHHhHHHhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhHHHHHH
Q 021727          115 ELRIRRKTMEAIKNQSRGFEDGKAASSEEIKALEDQMTTLKLKLKDLESELETKSKEANAAETNAVALRKQSEGFLFEYD  194 (308)
Q Consensus       115 eLa~le~~~ealkKQa~~a~~~~~~~~~e~~~~~~e~~~l~~evekLk~eLk~k~kel~kae~d~eaLKKQae~L~kEYD  194 (308)
                      ++-..+..++.+..++.+++........+.+.......++..+++++.+|++..+++=+...++.+..+.+++-++.-+.
T Consensus       348 qlen~k~~~e~~~~e~~~l~~~~~~~e~~kk~~e~k~~q~q~k~~k~~kel~~~~E~n~~l~knq~vw~~kl~~~~e~~~  427 (493)
T KOG0804|consen  348 QLENQKQYYELLITEADSLKQESSDLEAEKKIVERKLQQLQTKLKKCQKELKEEREENKKLIKNQDVWRGKLKELEEREK  427 (493)
T ss_pred             HHHhHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence            55555555555555544432210000011122222333445566666666665554333444455555555554444444


Q ss_pred             HHHHHH----HHHHHhHh
Q 021727          195 RLLEEN----QNLRNQLQ  208 (308)
Q Consensus       195 RL~eE~----~kLq~~l~  208 (308)
                      +....+    +.||+|+.
T Consensus       428 ~~~~s~d~~I~dLqEQlr  445 (493)
T KOG0804|consen  428 EALGSKDEKITDLQEQLR  445 (493)
T ss_pred             HHHHHHHHHHHHHHHHHH
Confidence            444333    34666543

>KOG0243 consensus Kinesin-like protein [Cytoskeleton]

Probab=82.27  E-value=16  Score=41.16  Aligned_cols=101  Identities=18%  Similarity=0.228  Sum_probs=52.8

Q ss_pred             HHHHHHHHHHHHHHHHHhcccc--cccccccchHHHHHhHHHhHHHHHHHHHHHHHHHHHHHHHH-------HhhhHHHH
Q 021727          111 HYIRELRIRRKTMEAIKNQSRG--FEDGKAASSEEIKALEDQMTTLKLKLKDLESELETKSKEAN-------AAETNAVA  181 (308)
Q Consensus       111 sLI~eLa~le~~~ealkKQa~~--a~~~~~~~~~e~~~~~~e~~~l~~evekLk~eLk~k~kel~-------kae~d~ea  181 (308)
                      -+..++.+++.++.|++...--  +++.-.....|.+...+.++.+..|++.++.+++......-       ....+.+.
T Consensus       408 d~~~EIerLK~dl~AaReKnGvyisee~y~~~e~e~~~~~~~ieele~el~~~~~~l~~~~e~~~~~~~~~~~l~~~~~~  487 (1041)
T KOG0243|consen  408 DLYEEIERLKRDLAAAREKNGVYISEERYTQEEKEKKEMAEQIEELEEELENLEKQLKDLTELYMNQLEIKELLKEEKEK  487 (1041)
T ss_pred             HHHHHHHHHHHHHHHhHhhCceEechHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence            4455677777777776542110  00000011112233333444444455555555544444322       23456677


Q ss_pred             HHHHHhhHHHHHHHHHHHHHHHHHhHhhcc
Q 021727          182 LRKQSEGFLFEYDRLLEENQNLRNQLQSLD  211 (308)
Q Consensus       182 LKKQae~L~kEYDRL~eE~~kLq~~l~~~d  211 (308)
                      +|++..+...|...+.+|+++++.++...+
T Consensus       488 ~k~~L~~~~~el~~~~ee~~~~~~~l~~~e  517 (1041)
T KOG0243|consen  488 LKSKLQNKNKELESLKEELQQAKATLKEEE  517 (1041)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            778888888888778777777776654433

>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []

Probab=82.15  E-value=20  Score=39.04  Aligned_cols=33  Identities=36%  Similarity=0.419  Sum_probs=20.0

Q ss_pred             hhHHHHHHHHHhhH----------HHHHHHHHHHHHHHHHhHh
Q 021727          176 ETNAVALRKQSEGF----------LFEYDRLLEENQNLRNQLQ  208 (308)
Q Consensus       176 e~d~eaLKKQae~L----------~kEYDRL~eE~~kLq~~l~  208 (308)
                      |.+.-.|+||..+|          .-|..||.+|.+-|+.|++
T Consensus       103 EeENislQKqvs~Lk~sQvefE~~Khei~rl~Ee~~~l~~qle  145 (717)
T PF09730_consen  103 EEENISLQKQVSVLKQSQVEFEGLKHEIKRLEEEIELLNSQLE  145 (717)
T ss_pred             HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44566777776544          3344466666666666665

Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus

>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]

Probab=82.00  E-value=9.7  Score=42.77  Aligned_cols=58  Identities=19%  Similarity=0.216  Sum_probs=30.1

Q ss_pred             HHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhHHHHH-------HHHHHHHHHHHHhHhhcccccc
Q 021727          158 LKDLESELETKSKEANAAETNAVALRKQSEGFLFEY-------DRLLEENQNLRNQLQSLDWRLS  215 (308)
Q Consensus       158 vekLk~eLk~k~kel~kae~d~eaLKKQae~L~kEY-------DRL~eE~~kLq~~l~~~d~~~s  215 (308)
                      .+.|+-|.++.++++...+..++.+.+|.+.+..|-       +....++.+++.++.....+..
T Consensus       817 ~e~l~lE~e~l~~e~~~~k~~l~~~~~~~~~l~~e~~~l~~kv~~~~~~~~~~~~el~~~k~k~~  881 (1174)
T KOG0933|consen  817 YERLQLEHEELEKEISSLKQQLEQLEKQISSLKSELGNLEAKVDKVEKDVKKAQAELKDQKAKQR  881 (1174)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHH
Confidence            344555555555555555555555555444444444       4444555666666665555553

>PF10234 Cluap1: Clusterin-associated protein-1; InterPro: IPR019366 This protein of 413 amino acids contains a central coiled-coil domain, possibly the region that binds to clusterin

Probab=81.40  E-value=19  Score=34.68  Aligned_cols=58  Identities=14%  Similarity=0.202  Sum_probs=32.4

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhHHHHHHHHHHHHHHHHHhHh
Q 021727          151 MTTLKLKLKDLESELETKSKEANAAETNAVALRKQSEGFLFEYDRLLEENQNLRNQLQ  208 (308)
Q Consensus       151 ~~~l~~evekLk~eLk~k~kel~kae~d~eaLKKQae~L~kEYDRL~eE~~kLq~~l~  208 (308)
                      ++..+..+..++.+-...+.++++.+.|++--+|..+.|+.-==--++||+++...++
T Consensus       178 ~~~~~~~l~~l~~de~~Le~KIekkk~ELER~qKRL~sLq~vRPAfmdEyEklE~EL~  235 (267)
T PF10234_consen  178 LQQTQQQLNNLASDEANLEAKIEKKKQELERNQKRLQSLQSVRPAFMDEYEKLEEELQ  235 (267)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHH
Confidence            3334444455555555555555555666666666666665544444667777666655

Cluap1 expression is highest in the nucleus and gradually increases during late S to G2/M phases of the cell cycle and returns to the basal level in the G0/G1 phases. In addition, it is upregulated in colon cancer tissues compared to corresponding non-cancerous mucosa. It thus plays a crucial role in the life of the cell [].

>PF06810 Phage_GP20: Phage minor structural protein GP20; InterPro: IPR009636 This family consists of several phage minor structural protein Gp20 sequences and prophage sequences of around 180 residues in length

Probab=81.15  E-value=9.7  Score=33.52  Aligned_cols=52  Identities=17%  Similarity=0.281  Sum_probs=37.3

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHH---HHhhHHHHHHHHHHHHHH
Q 021727          151 MTTLKLKLKDLESELETKSKEANAAETNAVALRK---QSEGFLFEYDRLLEENQN  202 (308)
Q Consensus       151 ~~~l~~evekLk~eLk~k~kel~kae~d~eaLKK---Qae~L~kEYDRL~eE~~k  202 (308)
                      +...+.++.+++.+++..+.+|..+...++.|++   =.+.|+.+++.|..++..
T Consensus        15 i~~~K~~~~~~~~e~~~~k~ql~~~d~~i~~Lk~~~~d~eeLk~~i~~lq~~~~~   69 (155)
T PF06810_consen   15 IEAPKAKVDKVKEERDNLKTQLKEADKQIKDLKKSAKDNEELKKQIEELQAKNKT   69 (155)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHH
Confidence            3334567777788888888888888888888887   455667777777777663

The function of this family is unknown.; GO: 0005198 structural molecule activity

>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function

Probab=80.77  E-value=20  Score=33.31  Aligned_cols=22  Identities=18%  Similarity=0.080  Sum_probs=9.1

Q ss_pred             HHHHHHHHHhhHHHHHHHHHHH
Q 021727          178 NAVALRKQSEGFLFEYDRLLEE  199 (308)
Q Consensus       178 d~eaLKKQae~L~kEYDRL~eE  199 (308)
                      ..+.+.++.+.++++-++|..+
T Consensus        71 ~~~~l~~~v~~q~~el~~L~~q   92 (251)
T PF11932_consen   71 YNEQLERQVASQEQELASLEQQ   92 (251)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHH
Confidence            3344444444444444444333

However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.

>PHA02562 46 endonuclease subunit; Provisional

Probab=80.65  E-value=16  Score=37.26  Aligned_cols=16  Identities=13%  Similarity=0.295  Sum_probs=6.3

Q ss_pred             HHHHHHHHHHHHHHHH
Q 021727          108 RLHHYIRELRIRRKTM  123 (308)
Q Consensus       108 Rl~sLI~eLa~le~~~  123 (308)
                      |+..+-.+...++.+.
T Consensus       300 ~~~~l~d~i~~l~~~l  315 (562)
T PHA02562        300 RITKIKDKLKELQHSL  315 (562)
T ss_pred             HHHHHHHHHHHHHHHH
Confidence            3333333333344333

>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication

Probab=80.62  E-value=12  Score=31.26  Aligned_cols=50  Identities=34%  Similarity=0.415  Sum_probs=39.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhHHHHHHHHHHHHHHHHHhHhhccc
Q 021727          156 LKLKDLESELETKSKEANAAETNAVALRKQSEGFLFEYDRLLEENQNLRNQLQSLDW  212 (308)
Q Consensus       156 ~evekLk~eLk~k~kel~kae~d~eaLKKQae~L~kEYDRL~eE~~kLq~~l~~~d~  212 (308)
                      ..+..++.++...-.       ++.+||+|...+..|=.+|.-|+++|+..+...+.
T Consensus         8 ~~l~~le~~l~~l~~-------~~~~LK~~~~~l~EEN~~L~~EN~~Lr~~l~~~~~   57 (107)
T PF06156_consen    8 DRLDQLEQQLGQLLE-------ELEELKKQLQELLEENARLRIENEHLRERLEELEQ   57 (107)
T ss_pred             HHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            345566666665554       67999999999999999999999999999886544

SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.

>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues

Probab=80.44  E-value=23  Score=34.81  Aligned_cols=98  Identities=17%  Similarity=0.253  Sum_probs=64.9

Q ss_pred             HHHHHHHHHHHHHHHHHhcccccccccccc-hHHHHH---hHHHhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Q 021727          111 HYIRELRIRRKTMEAIKNQSRGFEDGKAAS-SEEIKA---LEDQMTTLKLKLKDLESELETKSKEANAAETNAVALRKQS  186 (308)
Q Consensus       111 sLI~eLa~le~~~ealkKQa~~a~~~~~~~-~~e~~~---~~~e~~~l~~evekLk~eLk~k~kel~kae~d~eaLKKQa  186 (308)
                      .+=..+-.++++...++.++..+....... ..|..-   -..+....+.++..|..+|..+.++......++..|..|.
T Consensus       164 ~Lq~Klk~LEeEN~~LR~Ea~~L~~et~~~EekEqqLv~dcv~QL~~An~qia~LseELa~k~Ee~~rQQEEIt~Llsqi  243 (306)
T PF04849_consen  164 ALQEKLKSLEEENEQLRSEASQLKTETDTYEEKEQQLVLDCVKQLSEANQQIASLSEELARKTEENRRQQEEITSLLSQI  243 (306)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344455556666666666655443211000 011111   1223334456778899999999999888889999999999


Q ss_pred             hhHHHHHHHHHHHHHHHHHhHh
Q 021727          187 EGFLFEYDRLLEENQNLRNQLQ  208 (308)
Q Consensus       187 e~L~kEYDRL~eE~~kLq~~l~  208 (308)
                      -.+++..-.+.-|+++|+..+.
T Consensus       244 vdlQ~r~k~~~~EnEeL~q~L~  265 (306)
T PF04849_consen  244 VDLQQRCKQLAAENEELQQHLQ  265 (306)
T ss_pred             HHHHHHHHHHhhhHHHHHHHHH
Confidence            9999999999999988887765

HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	308
3q8t_A	96	Beclin-1; autophagy, ATG14L uvrag, apoptosis; 1.90	8e-04
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	8e-04

>3q8t_A Beclin-1; autophagy, ATG14L uvrag, apoptosis; 1.90A {Rattus norvegicus} Length = 96

 Score = 37.2 bits (86), Expect = 8e-04
 Identities = 13/86 (15%), Positives = 38/86 (44%), Gaps = 7/86 (8%)

Query: 139 ASSEEIKALEDQMTTLKL-------KLKDLESELETKSKEANAAETNAVALRKQSEGFLF 191
               + + L+ ++  L L       +L+D+E   +  ++     +  A  L ++   +  
Sbjct: 1   GPGSDSEQLQRELKELALEEERLIQELEDVEKNRKVVAENLEKVQAEAERLDQEEAQYQR 60

Query: 192 EYDRLLEENQNLRNQLQSLDWRLSHS 217
           EY     +   L ++L+S++ ++ ++
Sbjct: 61  EYSEFKRQQLELDDELKSVENQMRYA 86

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 40.2 bits (93), Expect = 8e-04
 Identities = 37/234 (15%), Positives = 75/234 (32%), Gaps = 51/234 (21%)

Query: 65  MIQKRWIDDEGAVVNPTDQVLLANHLLEATLM-GASLFLAFMIDRL---HHYIRELRIR- 119
           ++ K  ID    ++   D V     L    L     +   F+ + L   + ++    I+ 
Sbjct: 45  ILSKEEIDH---IIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMS-PIKT 100

Query: 120 ------RKTMEAIKNQSRGFEDGKAASSEEIKALEDQMTTLKLKLKDLESELET------ 167
                   T   I+ + R + D +  +   +  L+     L+  L +L            
Sbjct: 101 EQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQ-PYLKLRQALLELRPAKNVLIDGVL 159

Query: 168 ---KSKEANAAET-NAVALRKQSEGFLF--------EYDRLLEENQNLRNQL-QSLDWRL 214
              K+    A +   +  ++ + +  +F          + +LE  Q L  Q+  +   R 
Sbjct: 160 GSGKT--WVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRS 217

Query: 215 SHSDFRTVYWNAEKTASSTYCAAKVLDFELLTKLSMGSSSCKSLLVLAAVSSIK 268
            HS    +  ++ +                L +L         LLVL  V + K
Sbjct: 218 DHSSNIKLRIHSIQAE--------------LRRLLKSKPYENCLLVLLNVQNAK 257

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	308
1ic2_A	81	Tropomyosin alpha chain, skeletal muscle; alpha-he	95.01
3hnw_A	138	Uncharacterized protein; coiled-coil, structural g	94.9
3hnw_A	138	Uncharacterized protein; coiled-coil, structural g	94.52
3u59_A	101	Tropomyosin beta chain; muscle contraction, actin,	94.13
3vkg_A	3245	Dynein heavy chain, cytoplasmic; AAA+ protein, mol	93.4
3a7p_A	152	Autophagy protein 16; coiled-coil, coiled coil, cy	93.31
3u1c_A	101	Tropomyosin alpha-1 chain; anti-parallel coiled co	93.03
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	92.68
2dfs_A	1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	92.33
3q8t_A	96	Beclin-1; autophagy, ATG14L uvrag, apoptosis; 1.90	91.74
3cl3_D	130	NF-kappa-B essential modulator; death effector dom	90.79
2yy0_A	53	C-MYC-binding protein; conserved hypothetical prot	90.49
2jee_A	81	YIIU; FTSZ, septum, coiled-coil, cell division, ce	89.29
3na7_A	256	HP0958; flagellar biogenesis, flagellum export, C4	89.29
3qh9_A	81	Liprin-beta-2; coiled-coil, dimerization, structur	88.96
3u1c_A	101	Tropomyosin alpha-1 chain; anti-parallel coiled co	87.96
3u59_A	101	Tropomyosin beta chain; muscle contraction, actin,	87.72
2dfs_A	1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	87.48
3a7o_A	75	Autophagy protein 16; coiled-coil, coiled coil, cy	87.42
3ol1_A	119	Vimentin; structural genomics, PSI-2, protein stru	87.27
3mq7_A	121	Bone marrow stromal antigen 2; HIV, antiviral prot	86.92
2v71_A	189	Nuclear distribution protein NUDE-like 1; developm	86.12
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	85.44
3s4r_A	93	Vimentin; alpha-helix, cytoskeleton, intermediate	83.68
3na7_A	256	HP0958; flagellar biogenesis, flagellum export, C4	82.4
3q8t_A	96	Beclin-1; autophagy, ATG14L uvrag, apoptosis; 1.90	82.28
3a7p_A	152	Autophagy protein 16; coiled-coil, coiled coil, cy	82.08
2jee_A	81	YIIU; FTSZ, septum, coiled-coil, cell division, ce	80.93
1ic2_A	81	Tropomyosin alpha chain, skeletal muscle; alpha-he	80.73

>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled coil, alanine, symmetry, axial stagger, BEND, contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1

Probab=95.01  E-value=0.25  Score=37.65  Aligned_cols=60  Identities=20%  Similarity=0.235  Sum_probs=52.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhHHHHHHHHHHHHHHHHHhHhhccccc
Q 021727          155 KLKLKDLESELETKSKEANAAETNAVALRKQSEGFLFEYDRLLEENQNLRNQLQSLDWRL  214 (308)
Q Consensus       155 ~~evekLk~eLk~k~kel~kae~d~eaLKKQae~L~kEYDRL~eE~~kLq~~l~~~d~~~  214 (308)
                      ....+.++.+++..++...+++.++.+|++...++..++|+..+.....+.++...++..
T Consensus        19 ~~~~~~~e~~l~~~e~~~~~~E~ev~~L~kKiq~lE~eld~~ee~l~~a~~kLeeaek~~   78 (81)
T 1ic2_A           19 LDRAEQAEADKKAAEERSKQLEDELVALQKKLKGTEDELDKYSESLKDAQEKLELADKKA   78 (81)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGC
T ss_pred             HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            446677888888888888889999999999999999999999999999998888776654

>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}

Probab=94.90  E-value=0.24  Score=41.74  Aligned_cols=49  Identities=16%  Similarity=0.173  Sum_probs=22.7

Q ss_pred             HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Q 021727          157 KLKDLESELETKSKEANAAETNAVALRKQSEGFLFEYDRLLEENQNLRN  205 (308)
Q Consensus       157 evekLk~eLk~k~kel~kae~d~eaLKKQae~L~kEYDRL~eE~~kLq~  205 (308)
                      ++++++.|+...+.++.+++-..+.++++.+.+.++++.|..+..+|+.
T Consensus        83 ~l~~~~kE~~~lK~el~~~~~k~e~~~~e~~~l~~~~~~l~~~~~~le~  131 (138)
T 3hnw_A           83 DIENKDKEIYDLKHELIAAQIKAESSAKEIKELKSEINKYQKNIVKLET  131 (138)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3333333333333333333334455555555555555555555555543

>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}

Probab=94.52  E-value=0.22  Score=41.93  Aligned_cols=58  Identities=19%  Similarity=0.180  Sum_probs=39.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhHHHHHHHHHHHHHHHHHhHhh
Q 021727          152 TTLKLKLKDLESELETKSKEANAAETNAVALRKQSEGFLFEYDRLLEENQNLRNQLQS  209 (308)
Q Consensus       152 ~~l~~evekLk~eLk~k~kel~kae~d~eaLKKQae~L~kEYDRL~eE~~kLq~~l~~  209 (308)
                      -.++.+.+.|+.+++.+++++...+.++..++-+.+++.++...|.++++.|+.++..
T Consensus        71 ~k~~~~~~~L~~~l~~~~kE~~~lK~el~~~~~k~e~~~~e~~~l~~~~~~l~~~~~~  128 (138)
T 3hnw_A           71 FKAKKMADSLSLDIENKDKEIYDLKHELIAAQIKAESSAKEIKELKSEINKYQKNIVK  128 (138)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3445566677777777777776666677777777777777777777777777666543

>3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle protein; 2.50A {Gallus gallus}

Probab=94.13  E-value=0.29  Score=38.77  Aligned_cols=60  Identities=13%  Similarity=0.174  Sum_probs=49.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhHHHHHHHHHHHHHHHHHhHhhccccc
Q 021727          155 KLKLKDLESELETKSKEANAAETNAVALRKQSEGFLFEYDRLLEENQNLRNQLQSLDWRL  214 (308)
Q Consensus       155 ~~evekLk~eLk~k~kel~kae~d~eaLKKQae~L~kEYDRL~eE~~kLq~~l~~~d~~~  214 (308)
                      ....+.++.+++..+.+..+.+.++.+|+++..++..++|+..+.....+..+...+++.
T Consensus        22 ~d~ae~~e~~~k~~e~~~~~~E~ei~sL~kKiq~lE~eld~~~e~l~~a~~kLe~~ek~~   81 (101)
T 3u59_A           22 IDRAEQAEADKKQAEDRCKQLEEEQQGLQKKLKGTEDEVEKYSESVKEAQEKLEQAEKKA   81 (101)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            345667777788888888888889999999999999999999998888887777666554

>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*

Probab=93.40  E-value=0.17  Score=60.61  Aligned_cols=90  Identities=14%  Similarity=0.219  Sum_probs=63.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhHHHHHHHHHHHHHHHHHhHhhcccccc-------ccCccceeeccc-
Q 021727          156 LKLKDLESELETKSKEANAAETNAVALRKQSEGFLFEYDRLLEENQNLRNQLQSLDWRLS-------HSDFRTVYWNAE-  227 (308)
Q Consensus       156 ~evekLk~eLk~k~kel~kae~d~eaLKKQae~L~kEYDRL~eE~~kLq~~l~~~d~~~s-------~~~~k~~~~~~~-  227 (308)
                      +++++++.+++..+.+|..+++.+..+..+.+.++.+|+....|.++|+.+.+.-.++..       +-++-|.=|... 
T Consensus      2014 ~~l~~ae~~l~~~~~~L~~~~~~L~~le~~l~~L~~~~~~~~~ek~~L~~e~~~~~~kl~rA~~Li~gL~~Ek~RW~~~~ 2093 (3245)
T 3vkg_A         2014 EEVEQLENAANELKLKQDEIVATITALEKSIATYKEEYATLIRETEQIKTESSKVKNKVDRSIALLDNLNSERGRWEQQS 2093 (3245)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccHHHHH
Confidence            455667778888888888888888899999999999999999998888777665555443       334445555322 


Q ss_pred             ----------------cccccccchhhhhhhhhh
Q 021727          228 ----------------KTASSTYCAAKVLDFELL  245 (308)
Q Consensus       228 ----------------~~~~~~~~~~~~~~~~~~  245 (308)
                                      -+|--+||.+=.-+||..
T Consensus      2094 ~~l~~~~~~L~GD~LLaaafisY~G~f~~~~R~~ 2127 (3245)
T 3vkg_A         2094 ENFNTQMSTVVGDVVLASAFLAYIGFFDQNFRTD 2127 (3245)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHTGGGSCHHHHHH
T ss_pred             HHHHHHHHhccHHHHHHHHHHHHcCCCCHHHHHH
Confidence                            123457887777777754

>3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.80A {Saccharomyces cerevisiae}

Probab=93.31  E-value=0.58  Score=40.20  Aligned_cols=59  Identities=12%  Similarity=0.205  Sum_probs=48.1

Q ss_pred             HhHHHhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhHHHHHHHHHHHHHHHH
Q 021727          146 ALEDQMTTLKLKLKDLESELETKSKEANAAETNAVALRKQSEGFLFEYDRLLEENQNLR  204 (308)
Q Consensus       146 ~~~~e~~~l~~evekLk~eLk~k~kel~kae~d~eaLKKQae~L~kEYDRL~eE~~kLq  204 (308)
                      .+..+...+..++.+|+.+++.+.+.+.....++.+|+-|..-++..-.+|.+||+.|-
T Consensus        72 ~L~~El~~l~~ki~dLeeel~eK~K~~e~l~DEl~aLqlq~n~lE~kl~kLq~EN~~LV  130 (152)
T 3a7p_A           72 ILQKELKSKEQEIRRLKEVIALKNKNTERLNAALISGTIENNVLQQKLSDLKKEHSQLV  130 (152)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44455666778888999999999988888888889999998888888888888887753

>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A

Probab=93.03  E-value=0.57  Score=37.20  Aligned_cols=59  Identities=19%  Similarity=0.141  Sum_probs=47.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhHHHHHHHHHHHHHHHHHhHhhccccc
Q 021727          156 LKLKDLESELETKSKEANAAETNAVALRKQSEGFLFEYDRLLEENQNLRNQLQSLDWRL  214 (308)
Q Consensus       156 ~evekLk~eLk~k~kel~kae~d~eaLKKQae~L~kEYDRL~eE~~kLq~~l~~~d~~~  214 (308)
                      .+.+.++.+++..+.+..+.+.++.+|.+...++..+.|+..+.....+.++...+++.
T Consensus        23 drae~~e~~~k~~e~~~~~~E~Ei~sL~kk~~~lE~eld~~ee~L~ea~~kLee~ek~~   81 (101)
T 3u1c_A           23 DRAEQAEADKKAAEERSKQLEDDIVQLEKQLRVTEDSRDQVLEELHKSEDSLLFAEENA   81 (101)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            45667777777777777788889999999999999999999888888777777666654

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=92.68  E-value=1.5  Score=43.05  Aligned_cols=55  Identities=22%  Similarity=0.220  Sum_probs=34.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhHHHHHHHHHHHHHHHHHhHh
Q 021727          154 LKLKLKDLESELETKSKEANAAETNAVALRKQSEGFLFEYDRLLEENQNLRNQLQ  208 (308)
Q Consensus       154 l~~evekLk~eLk~k~kel~kae~d~eaLKKQae~L~kEYDRL~eE~~kLq~~l~  208 (308)
                      +..++++++++.+++.++++..+++.+.++++.+...+...++.+|.+++..++.
T Consensus       521 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~~~~~~~~~~~l~~e~~~~~~~~~  575 (597)
T 3oja_B          521 KLRETQARRTEADAKQKETEDLEQENIALEKQLDNKRAKQAELRQETSLKRQKVK  575 (597)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHhhhhhhcchhhHHhhhHHHHHHHhhhhhHHHHHHHHHHHHHHHHH
Confidence            3344555566665556666666666677777777777777777777666554444

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}

Probab=92.33  E-value=0.59  Score=50.87  Aligned_cols=41  Identities=12%  Similarity=0.104  Sum_probs=19.9

Q ss_pred             HHHHHHHHHHhhhHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Q 021727          165 LETKSKEANAAETNAVALRKQSEGFLFEYDRLLEENQNLRN  205 (308)
Q Consensus       165 Lk~k~kel~kae~d~eaLKKQae~L~kEYDRL~eE~~kLq~  205 (308)
                      .++.+.++...+.+++.++++.+.+.+|++.+.+++++++.
T Consensus       979 ~~~~~~~v~~L~~e~~~l~~~~~~~~ke~~~lee~~~~~~~ 1019 (1080)
T 2dfs_A          979 AKNATNRVLSLQEEIAKLRKELHQTQTEKKTIEEWADKYKH 1019 (1080)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33333344444445555555555555555555555444443

>3q8t_A Beclin-1; autophagy, ATG14L uvrag, apoptosis; 1.90A {Rattus norvegicus}

Probab=91.74  E-value=1.9  Score=33.93  Aligned_cols=54  Identities=17%  Similarity=0.314  Sum_probs=26.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhHHHHHHHHHHHHHHHHHhHh
Q 021727          155 KLKLKDLESELETKSKEANAAETNAVALRKQSEGFLFEYDRLLEENQNLRNQLQ  208 (308)
Q Consensus       155 ~~evekLk~eLk~k~kel~kae~d~eaLKKQae~L~kEYDRL~eE~~kLq~~l~  208 (308)
                      .+++++|+++=...+.++...+.+.+.|..|-+..-++|..+.-+.-..++...
T Consensus        24 ~~eL~~lEke~~~l~~el~~le~E~~~L~~eE~~~w~eyn~~~~ql~e~~dE~~   77 (96)
T 3q8t_A           24 IQELEDVEKNRKVVAENLEKVQAEAERLDQEEAQYQREYSEFKRQQLELDDELK   77 (96)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344445555545445555455555555555555555555544444433444333

>3cl3_D NF-kappa-B essential modulator; death effector domain, coiled-coil, coiled coil, cytoplasm, disease mutation, ectodermal dysplasia; 3.20A {Homo sapiens}

Probab=90.79  E-value=0.83  Score=38.19  Aligned_cols=97  Identities=16%  Similarity=0.245  Sum_probs=39.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHhcccccccccccchHHHHHhHHHhHH----HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHH
Q 021727          109 LHHYIRELRIRRKTMEAIKNQSRGFEDGKAASSEEIKALEDQMTT----LKLKLKDLESELETKSKEANAAETNAVALRK  184 (308)
Q Consensus       109 l~sLI~eLa~le~~~ealkKQa~~a~~~~~~~~~e~~~~~~e~~~----l~~evekLk~eLk~k~kel~kae~d~eaLKK  184 (308)
                      +.+++.+|-..+..++++....+++++..............|++.    ..-.+++|+-+.+..+.+++-...-...=|.
T Consensus         4 vtSL~~ELqEsqskL~~Ae~~k~~Leek~~~~e~~~~~~~~Elee~kqq~~~~~d~L~lQ~esmeaalkmEr~~~~eEKr   83 (130)
T 3cl3_D            4 ASGSLGELQESQSRLEAATKECQALEGRARAASEQARQLESEREALQQQHSVQVDQLRMQGQSVEAALRMERQAASEEKR   83 (130)
T ss_dssp             -----------------------------------------------CTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            345566666666666555544443332111011111122223222    2235677777777777777666555666788


Q ss_pred             HHhhHHHHHHHHHHHHHHHHH
Q 021727          185 QSEGFLFEYDRLLEENQNLRN  205 (308)
Q Consensus       185 Qae~L~kEYDRL~eE~~kLq~  205 (308)
                      ...+|+-.|+.|..||++.-+
T Consensus        84 kLAqLQ~AY~~LfqeYd~~lK  104 (130)
T 3cl3_D           84 KLAQLQVAYHQLFQEYDNHIK  104 (130)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHH
Confidence            899999999999999998433

>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}

Probab=90.49  E-value=0.45  Score=33.93  Aligned_cols=32  Identities=25%  Similarity=0.406  Sum_probs=21.2

Q ss_pred             HHHHHHHHHhhHHHHHHHHHHHHHHHHHhHhh
Q 021727          178 NAVALRKQSEGFLFEYDRLLEENQNLRNQLQS  209 (308)
Q Consensus       178 d~eaLKKQae~L~kEYDRL~eE~~kLq~~l~~  209 (308)
                      |+++||..-+.|...|+.|.++++.++.++..
T Consensus        20 d~eaLk~E~~eLk~k~~~L~~~~~el~~~l~~   51 (53)
T 2yy0_A           20 EIELLRLELAEMKEKYEAIVEENKKLKAKLAQ   51 (53)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            55666666666666677777777777766653

>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}

Probab=89.29  E-value=4.4  Score=31.34  Aligned_cols=54  Identities=22%  Similarity=0.340  Sum_probs=34.5

Q ss_pred             HHHhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhHHHHHHHHHHHHHHHHHhHh
Q 021727          148 EDQMTTLKLKLKDLESELETKSKEANAAETNAVALRKQSEGFLFEYDRLLEENQNLRNQLQ  208 (308)
Q Consensus       148 ~~e~~~l~~evekLk~eLk~k~kel~kae~d~eaLKKQae~L~kEYDRL~eE~~kLq~~l~  208 (308)
                      .+.|+-+.-|+++||.+-.....       +.+.++.+.+.+..|..+|.+|++.-+..+.
T Consensus        19 vdtI~lLqmEieELKekN~~L~~-------e~~e~~~~~~~L~~en~qLk~E~~~wq~Rl~   72 (81)
T 2jee_A           19 IDTITLLQMEIEELKEKNNSLSQ-------EVQNAQHQREELERENNHLKEQQNGWQERLQ   72 (81)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence            34445555566666655554443       5667777777788888888888876555544

>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}

Probab=89.29  E-value=2.9  Score=37.70  Aligned_cols=50  Identities=16%  Similarity=0.134  Sum_probs=25.2

Q ss_pred             HHHHHHHHHHHHHHHHhhhHHHHHHHHHhhHHHHHHHHHHHHHHHHHhHh
Q 021727          159 KDLESELETKSKEANAAETNAVALRKQSEGFLFEYDRLLEENQNLRNQLQ  208 (308)
Q Consensus       159 ekLk~eLk~k~kel~kae~d~eaLKKQae~L~kEYDRL~eE~~kLq~~l~  208 (308)
                      +.|..|++..++++...+.++..+-.+.+.+..+.+.+.++...++..+.
T Consensus        93 ~aL~kEie~~~~~i~~lE~eile~~e~ie~~~~~l~~~~~~l~~~~~~l~  142 (256)
T 3na7_A           93 RSLNIEEDIAKERSNQANREIENLQNEIKRKSEKQEDLKKEMLELEKLAL  142 (256)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34444555544444455555555555555555555555555554444443

>3qh9_A Liprin-beta-2; coiled-coil, dimerization, structural protein; 2.01A {Homo sapiens}

Probab=88.96  E-value=3  Score=32.29  Aligned_cols=54  Identities=24%  Similarity=0.283  Sum_probs=45.1

Q ss_pred             HhHHHhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhHHHHHHHHHHH
Q 021727          146 ALEDQMTTLKLKLKDLESELETKSKEANAAETNAVALRKQSEGFLFEYDRLLEE  199 (308)
Q Consensus       146 ~~~~e~~~l~~evekLk~eLk~k~kel~kae~d~eaLKKQae~L~kEYDRL~eE  199 (308)
                      ...-|+..|+-.+++++.|=-+.+++|+..+.++..|+.|.++=..|..||.++
T Consensus        23 ~L~qEi~~Lr~kv~elEnErlQyEkKLKsTK~El~~Lq~qLe~kd~ei~rL~~~   76 (81)
T 3qh9_A           23 ELLQELRHLKIKVEELENERNQYEWKLKATKAEVAQLQEQVALKDAEIERLHSQ   76 (81)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhHHHHHHHHHH
Confidence            344566778888888888888888899999999999999999999988888655

>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A

Probab=87.96  E-value=6.2  Score=31.12  Aligned_cols=9  Identities=22%  Similarity=0.361  Sum_probs=3.5

Q ss_pred             HHHHHhccc
Q 021727          123 MEAIKNQSR  131 (308)
Q Consensus       123 ~ealkKQa~  131 (308)
                      +.+++-+++
T Consensus        11 m~~lk~e~e   19 (101)
T 3u1c_A           11 MQMLKLDKE   19 (101)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            333443333

>3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle protein; 2.50A {Gallus gallus}

Probab=87.72  E-value=6.6  Score=30.80  Aligned_cols=51  Identities=12%  Similarity=0.102  Sum_probs=18.9

Q ss_pred             HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhHHHHHHHHHHHHHHHHHhH
Q 021727          157 KLKDLESELETKSKEANAAETNAVALRKQSEGFLFEYDRLLEENQNLRNQL  207 (308)
Q Consensus       157 evekLk~eLk~k~kel~kae~d~eaLKKQae~L~kEYDRL~eE~~kLq~~l  207 (308)
                      ++..|+..+...+.++.+++..+...+.+.+.-.+..+.--.+...|...+
T Consensus        45 ei~sL~kKiq~lE~eld~~~e~l~~a~~kLe~~ek~~~~AE~evasLnRri   95 (101)
T 3u59_A           45 EQQGLQKKLKGTEDEVEKYSESVKEAQEKLEQAEKKATDAEAEVASLNRRI   95 (101)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            333344434333333333333333333333333333332223333444433

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}

Probab=87.48  E-value=1.4  Score=47.98  Aligned_cols=8  Identities=25%  Similarity=0.476  Sum_probs=3.0

Q ss_pred             HHHHHHHh
Q 021727          199 ENQNLRNQ  206 (308)
Q Consensus       199 E~~kLq~~  206 (308)
                      |+++|+.|
T Consensus      1031 e~~~L~qq 1038 (1080)
T 2dfs_A         1031 QNTLLKTE 1038 (1080)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            33334333

>3a7o_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.50A {Saccharomyces cerevisiae}

Probab=87.42  E-value=4.8  Score=30.46  Aligned_cols=55  Identities=25%  Similarity=0.170  Sum_probs=38.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhHHHHHHHHHHHHHHHHHhHh
Q 021727          154 LKLKLKDLESELETKSKEANAAETNAVALRKQSEGFLFEYDRLLEENQNLRNQLQ  208 (308)
Q Consensus       154 l~~evekLk~eLk~k~kel~kae~d~eaLKKQae~L~kEYDRL~eE~~kLq~~l~  208 (308)
                      +..-+..|+++|+.++.++...+.-+.-=-|-+|.|+.|.=.+.-|++-||++++
T Consensus        16 ~~~~l~~Lr~eL~~Ke~eI~~L~e~i~lk~kd~ErLNDEiislNIENNlL~~rl~   70 (75)
T 3a7o_A           16 LLNTLAILQKELKSKEQEIRRLKEVIALKNKNTERLNDELISGTIENNVLQQKLS   70 (75)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHhhHHHHHhHHHHHHHHHHHH
Confidence            3446777888888888887766544433335567777777777777787887765

>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A

Probab=86.92  E-value=7.3  Score=32.11  Aligned_cols=34  Identities=24%  Similarity=0.244  Sum_probs=18.2

Q ss_pred             HHHHHHHHHhhHHHHHHHHHHHHHHHHHhHhhcc
Q 021727          178 NAVALRKQSEGFLFEYDRLLEENQNLRNQLQSLD  211 (308)
Q Consensus       178 d~eaLKKQae~L~kEYDRL~eE~~kLq~~l~~~d  211 (308)
                      +++.|+.+..+...|-.||..+++.++-.++..+
T Consensus        79 EI~~Lnq~Lq~a~ae~erlr~~~~~~~~r~~~~~  112 (121)
T 3mq7_A           79 EITTLNHKLQDASAEVERLRRENQVLSVRIADKK  112 (121)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC---
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhchhhhhHhhhcc
Confidence            3445555555555666666666666665555333

>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}

Probab=86.12  E-value=11  Score=33.18  Aligned_cols=22  Identities=5%  Similarity=-0.031  Sum_probs=13.0

Q ss_pred             HhhHHHHHHHHHHHHHHHHHhH
Q 021727          186 SEGFLFEYDRLLEENQNLRNQL  207 (308)
Q Consensus       186 ae~L~kEYDRL~eE~~kLq~~l  207 (308)
                      ...|++|...|.+.++.++.++
T Consensus        90 ~~~Lq~el~~l~~~~~~l~~~i  111 (189)
T 2v71_A           90 VSVLEDDLSQTRAIKEQLHKYV  111 (189)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHH
Confidence            5556666666666666555443

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=85.44  E-value=14  Score=36.27  Aligned_cols=61  Identities=13%  Similarity=0.046  Sum_probs=38.5

Q ss_pred             HHHhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhHHHHHHHHHHHHHHHHHhHh
Q 021727          148 EDQMTTLKLKLKDLESELETKSKEANAAETNAVALRKQSEGFLFEYDRLLEENQNLRNQLQ  208 (308)
Q Consensus       148 ~~e~~~l~~evekLk~eLk~k~kel~kae~d~eaLKKQae~L~kEYDRL~eE~~kLq~~l~  208 (308)
                      ..++....+++++.+.+++..+++....+...+..|+|.+.+.+|-+.+..|..+|.+.+.
T Consensus       522 ~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~~~~~~~~~~~l~~e~~~~~~~~~~l~~~~~  582 (597)
T 3oja_B          522 LRETQARRTEADAKQKETEDLEQENIALEKQLDNKRAKQAELRQETSLKRQKVKQLEAKKN  582 (597)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHhhhhhhcchhhHHhhhHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            3344555556666666666666666666666677777777777776666666666665554

>3s4r_A Vimentin; alpha-helix, cytoskeleton, intermediate filament, structural; 2.45A {Homo sapiens} PDB: 3ssu_A

Probab=83.68  E-value=7.7  Score=30.25  Aligned_cols=24  Identities=17%  Similarity=0.299  Sum_probs=16.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhc
Q 021727          106 IDRLHHYIRELRIRRKTMEAIKNQ  129 (308)
Q Consensus       106 I~Rl~sLI~eLa~le~~~ealkKQ  129 (308)
                      =+|+.++|.....++.+...+..+
T Consensus        15 NdRlAsyIdKVR~LEqqN~~Le~~   38 (93)
T 3s4r_A           15 NDRFANLIDKVRFLEQQNKILLAE   38 (93)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH
Confidence            357777777777777766666443

>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}

Probab=82.40  E-value=27  Score=31.24  Aligned_cols=43  Identities=14%  Similarity=0.248  Sum_probs=18.9

Q ss_pred             HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhHHHHHHHHHHH
Q 021727          157 KLKDLESELETKSKEANAAETNAVALRKQSEGFLFEYDRLLEE  199 (308)
Q Consensus       157 evekLk~eLk~k~kel~kae~d~eaLKKQae~L~kEYDRL~eE  199 (308)
                      ++.++..+++.++.++...+..++.++...+....++|.-..+
T Consensus       112 eile~~e~ie~~~~~l~~~~~~l~~~~~~l~~~~~~~~~~~~e  154 (256)
T 3na7_A          112 EIENLQNEIKRKSEKQEDLKKEMLELEKLALELESLVENEVKN  154 (256)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3333334444444444444444444444444444444444333

>3q8t_A Beclin-1; autophagy, ATG14L uvrag, apoptosis; 1.90A {Rattus norvegicus}

Probab=82.28  E-value=9.8  Score=29.82  Aligned_cols=60  Identities=20%  Similarity=0.221  Sum_probs=31.5

Q ss_pred             HHhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhHHHHHHHHHHHHHHHHHhHh
Q 021727          149 DQMTTLKLKLKDLESELETKSKEANAAETNAVALRKQSEGFLFEYDRLLEENQNLRNQLQ  208 (308)
Q Consensus       149 ~e~~~l~~evekLk~eLk~k~kel~kae~d~eaLKKQae~L~kEYDRL~eE~~kLq~~l~  208 (308)
                      .++..+..+-..|-.+|+..+++-.....++.+++.+++.+..+-.+.-.+|+..+.++.
T Consensus        11 ~eL~~l~~eE~~L~~eL~~lEke~~~l~~el~~le~E~~~L~~eE~~~w~eyn~~~~ql~   70 (96)
T 3q8t_A           11 RELKELALEEERLIQELEDVEKNRKVVAENLEKVQAEAERLDQEEAQYQREYSEFKRQQL   70 (96)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence            333444444445555555555555555555555555555555555555555555544433

>3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.80A {Saccharomyces cerevisiae}

Probab=82.08  E-value=10  Score=32.42  Aligned_cols=20  Identities=15%  Similarity=0.185  Sum_probs=9.1

Q ss_pred             HHHHHHHHHhhHHHHHHHHH
Q 021727          178 NAVALRKQSEGFLFEYDRLL  197 (308)
Q Consensus       178 d~eaLKKQae~L~kEYDRL~  197 (308)
                      .+..+..+...+++|++.|.
T Consensus       111 q~n~lE~kl~kLq~EN~~LV  130 (152)
T 3a7p_A          111 ENNVLQQKLSDLKKEHSQLV  130 (152)
T ss_dssp             HHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHH
Confidence            34444444444555554333

>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}

Probab=80.93  E-value=17  Score=27.99  Aligned_cols=9  Identities=44%  Similarity=0.652  Sum_probs=3.4

Q ss_pred             HHHHHHHHH
Q 021727          196 LLEENQNLR  204 (308)
Q Consensus       196 L~eE~~kLq  204 (308)
                      |..|+++|+
T Consensus        53 L~~en~qLk   61 (81)
T 2jee_A           53 LERENNHLK   61 (81)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            333333333

>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled coil, alanine, symmetry, axial stagger, BEND, contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1

Probab=80.73  E-value=9.4  Score=28.72  Aligned_cols=47  Identities=19%  Similarity=0.152  Sum_probs=18.4

Q ss_pred             HHHHHHHHHHHHHHHhhhHHHHHHHHHhhHHHHHHHHHHHHHHHHHh
Q 021727          160 DLESELETKSKEANAAETNAVALRKQSEGFLFEYDRLLEENQNLRNQ  206 (308)
Q Consensus       160 kLk~eLk~k~kel~kae~d~eaLKKQae~L~kEYDRL~eE~~kLq~~  206 (308)
                      .|+.+.+.....+..++.+++...+.......|++.|....+.+...
T Consensus        10 ~lk~e~d~a~~~~~~~e~~l~~~e~~~~~~E~ev~~L~kKiq~lE~e   56 (81)
T 1ic2_A           10 MLKLDKENALDRAEQAEADKKAAEERSKQLEDELVALQKKLKGTEDE   56 (81)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence            33333333333333333334444444444444444444333333333

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	308
d1seta1	110	Seryl-tRNA synthetase (SerRS) {Thermus thermophilu	80.32

>d1seta1 a.2.7.1 (A:1-110) Seryl-tRNA synthetase (SerRS) {Thermus thermophilus, strain hb27 [TaxId: 274]}

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: tRNA-binding arm
family: Seryl-tRNA synthetase (SerRS)
domain: Seryl-tRNA synthetase (SerRS)
species: Thermus thermophilus, strain hb27 [TaxId: 274]

Probab=80.32  E-value=5.5  Score=29.36  Aligned_cols=51  Identities=22%  Similarity=0.206  Sum_probs=21.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHh-hhHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Q 021727          155 KLKLKDLESELETKSKEANAA-ETNAVALRKQSEGFLFEYDRLLEENQNLRN  205 (308)
Q Consensus       155 ~~evekLk~eLk~k~kel~ka-e~d~eaLKKQae~L~kEYDRL~eE~~kLq~  205 (308)
                      ..+++.|+.+-....+++.++ ..+.+.+++++..+..+...+.++.+.+..
T Consensus        41 ~~~~e~l~~~rN~~sk~i~k~~~~~~~~l~~~~k~lk~~i~~le~~~~~~~~   92 (110)
T d1seta1          41 KKRLQEVQTERNQVAKRVPKAPPEEKEALIARGKALGEEAKRLEEALREKEA   92 (110)
T ss_dssp             HHHHHHHHHHHHHHHHHGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            334444444444444444222 123344444444444444444444444333