Citrus Sinensis ID: 021734

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------31
Protein Sequence
MVFSNSWILPLKVFFISTGVLSIALFCKSSVPFVMDFSVSRAPVIWSSFVSWLKPPYLYIIINAIIIIIAASSHLYQNDHVPSTDSTPSDVEYEMKYEQQQMIVVAEEENKATVFEEKSVVVSGDDAQVEVGNYGDAAPWTPPQRTDSLEILTDFHLLAEEEKPLVSARFGHRKPIKSSPEDGKKLRVTKPRRHETLENTWKTITEGRAMPLTRHMKKSDTWENHGRQVNVDPLLVKKSETFKDRTNFQLPPVNNSPGSAGKLRKEPSLSQDELNRRVEAFIKKFNDEMRLQRQESLRQYQEMISRGI
Secondary Structure (PSIPRED)
ccccccccHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHcccHHHHHHHHHHccccHHHHHHHHHHHHHHHHccccccccccccccccccHHHHHcccccccccHHHccccccccccccccccccccHHHccccccccccccccccccHHHcccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc
Secondary Structure Prediction (SSPRO)
cccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHEEEEEHHEHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccEEEcccccccccccccccccccccccccccccccHHHcccccccccccccccccccccccccccccccEEccccccHHHHHHHHHHHcccccccHHHccccccccccccccccccHHHccccccccccccccccccccccccccEEccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc
Coil and Loop (DISEMBL)
mvfsnswilplkVFFISTGVLSIALFCkssvpfvmdfsvsrapviwssfvswlkppylyIIINAIIIIIAASshlyqndhvpstdstpsdvEYEMKYEQQQMIVVAEEEnkatvfeeksvvvsgddaqvevgnygdaapwtppqrtdslEILTDFHLLAeeekplvsarfghrkpiksspedgkklrvtkprrhetlENTWKTitegrampltrhmkksdtwenhgrqvnvdpllvkksetfkdrtnfqlppvnnspgsagklrkepslsqDELNRRVEAFIKKFNDEMRLQRQESLRQYQEMISRGI
Flexible Loop (DISEMBL)
mvfsnswilpLKVFFISTGVLSIALFCKSSVPFVMDFSVSRAPVIWSSFVSWLKPPYLYIIINAIIIIIAASSHLYQNDHVPSTDSTPSDVEYEMKYEQQQMIVVAEEENKATVFEEksvvvsgddaQVEVGNYGDAAPWTPPQRTDSLEILTDFHLLAEEEKplvsarfghrkpiksspedgkklrvtkprrhetlentwktitegrampltrhmkksdtwenhgrqvnvdpllvKKSETfkdrtnfqlppvnnspgsagklrkepslsqdelNRRVEAFIKKFNDEMRLQRQESLRQYQEMISRGI
Low Complexity Region (SEG)
MVFSNSWILPLKVFFISTGVLSIALFCKSSVPFVMDFSVSRAPVIWSSFVSWLKPPYLYiiinaiiiiiaaSSHLYQNDHVPSTDSTPSDVEYEMKYEQQQMIVVAEEENKATVFEEKSVVVSGDDAQVEVGNYGDAAPWTPPQRTDSLEILTDFHLLAEEEKPLVSARFGHRKPIKSSPEDGKKLRVTKPRRHETLENTWKTITEGRAMPLTRHMKKSDTWENHGRQVNVDPLLVKKSETFKDRTNFQLPPVNNSPGSAGKLRKEPSLSQDELNRRVEAFIKKFNDEMRLQRQESLRQYQEMISRGI
Disordered region (IsUnstruct)
***SNSWILPLKVFFISTGVLSIALFCKSSVPFVMDFSVSRAPVIWSSFVSWLKPPYLYIIINAIIIIIAASSHLYQ************************MIVVA*****ATVFEEKSVVVSGDDAQVEVGNYGDAAPWT*****DSLEILTDFHLLA*****************************************************************************************************************************************************
Disordered Region (DISOPRED)
******W*LPLKVFFISTGVLSIALFCKSSVPFVMDFSVSRAPVIWSSFVSWLKPPYLYIIINAIIIIIAA*************************************************************************************************************************************************************************************************************RVEAFIKKFNDEMRL*******QYQEMISRG*
Disordered Region (DISEMBL)
MVFSNSWILPLKVFFISTGVLSIALFCKSSVPFVMDFSVSRAPVIWSSFVSWLKPPYLYIIINAIIIIIAASSHLYQND**********DVEYEMKYEQQQMIVVAEEENKATVFEEKSVVVSGDDAQVEVGNYGDAAPWTPPQRTDSLEILTDFHLLAEEEKPLVSARFGHRKPIKSSPEDGKKLRVTKPRRHETLENTWKTITEGRAMPLTRHMKKSDTWENHGRQVNVDPLLVKKSETFKDRTNFQLPPVNN**************SQDELNRRVEAFIKKFNDEMRLQRQESLRQYQEMISRGI
Disordered Region (DISPRO)
*****SWILPLKVFFISTGVLSIALFCKSSVPFVMDFSVSRAPVIWSSFVSWLKPPYLYIIINAIIIIIAASSH*******************************************KSVV********************************D*H****************************KLRVTKPRRHETLENTWKTITEGRAMPLT**MKKSDTWE********************************************SLSQDELNRRVEAFIKKFNDEMRLQRQESLRQYQEMISR**
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
ooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MVFSNSWILPLKVFFISTGVLSIALFCKSSVPFVMDFSVSRAPVIWSSFVSWLKPPYLYIIINAIIIIIAASSHLYQNDHVPSTDSTPSDVEYEMKYEQQQMIVVAEEENKATVFEEKSVVVSGDDAQVEVGNYGDAAPWTPPQRTDSLEILTDFHLLAEEEKPLVSARFGHRKPIKSSPEDGKKLRVTKPRRHETLENTWKTITEGRAMPLTRHMKKSDTWENHGRQVNVDPLLVKKSETFKDRTNFQLPPVNNSPGSAGKLRKEPSLSQDELNRRVEAFIKKFNDEMRLQRQESLRQYQEMISRGI
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	308
68131790	331	fiber expressed protein [Gossypium hirsu	0.961	0.894	0.568	6e-93
255560836	338	conserved hypothetical protein [Ricinus	0.961	0.875	0.540	2e-87
3264828	331	cotton fiber expressed protein 1 [Gossyp	0.961	0.894	0.563	4e-86
224114045	330	predicted protein [Populus trichocarpa]	0.964	0.9	0.573	6e-81
359496721	330	PREDICTED: uncharacterized protein LOC10	0.957	0.893	0.551	9e-78
118481177	354	unknown [Populus trichocarpa]	0.964	0.838	0.530	2e-77
147766669	407	hypothetical protein VITISV_003953 [Viti	0.977	0.739	0.549	2e-76
225461324	320	PREDICTED: uncharacterized protein LOC10	0.957	0.921	0.518	8e-69
302144236	304	unnamed protein product [Vitis vinifera]	0.886	0.898	0.509	1e-68
3264830	275	cotton fiber expressed protein 2 [Gossyp	0.785	0.88	0.528	5e-68

>gi|68131790|gb|AAY85179.1| fiber expressed protein [Gossypium hirsutum]

 Score =  346 bits (888), Expect = 6e-93,   Method: Compositional matrix adjust.
 Identities = 194/341 (56%), Positives = 231/341 (67%), Gaps = 45/341 (13%)

Query: 1   MVFSNSWILPLKVFFISTGVLSIALFCKSSVPFVMDFSVSRAPVIWSSFVSWLKPPYLYI 60
           M  +++WIL LKVF ISTG+L I L  K SVP V++FSVS+AP+ WS F SWLKPPYLY+
Sbjct: 1   MATASTWILSLKVFLISTGILGIVLGLKISVPLVLEFSVSQAPLWWSGFRSWLKPPYLYV 60

Query: 61  IINAIIIIIAASSHLYQNDHVP------------STDSTPSDVEYEMK------------ 96
           +IN III IAASS   QN+               S D  P  VEYE K            
Sbjct: 61  VINGIIITIAASSRFNQNNGEKDQMEQMQPRPKISADQQPM-VEYETKSGWDSDAVESSD 119

Query: 97  --YEQQQMIVVAEEENKATVFEEKSVVVSGDDAQVEVGN--YGDAAPWTPPQRTDSLEIL 152
             YE+ Q      EE +  V EE+S V   DD     GN      + W PP RTDS EI 
Sbjct: 120 FVYEENQR----GEEVETRVSEEESNVAVKDDRD---GNEFVISKSEWIPPSRTDSSEIP 172

Query: 153 TDFHLLAEEEKPLVSARFGHRKPIKSSPEDGKKLRVTKPRRHETLENTWKTITEGRAMPL 212
            D  L+  +EKP  S+RFGHRKP+K++PE G+ L+  KP+RHETLENTWK ITEG++MPL
Sbjct: 173 LDALLI--QEKPAPSSRFGHRKPVKANPEGGRALKAAKPKRHETLENTWKMITEGKSMPL 230

Query: 213 TRHMKKSDTWENHGRQVNVDPL----LVKKSETFKDRTNFQLPP--VNNSPGSAGKLRKE 266
           +RH+KKSDTWENHGR +N++ L    L+KKSETF+DRTN+QLPP  V++ P S GKLRKE
Sbjct: 231 SRHLKKSDTWENHGRDINMEALTSSPLMKKSETFRDRTNYQLPPEQVSSFPAS-GKLRKE 289

Query: 267 PSLSQDELNRRVEAFIKKFNDEMRLQRQESLRQYQEMISRG 307
           PSLSQDELNRRVEAFIKKFNDEMRLQRQESL QY EM+ RG
Sbjct: 290 PSLSQDELNRRVEAFIKKFNDEMRLQRQESLNQYMEMVDRG 330

Source: Gossypium hirsutum

Species: Gossypium hirsutum

Genus: Gossypium

Family: Malvaceae

Order: Malvales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255560836|ref|XP_002521431.1| conserved hypothetical protein [Ricinus communis] gi|223539330|gb|EEF40921.1| conserved hypothetical protein [Ricinus communis]

 Score =  328 bits (841), Expect = 2e-87,   Method: Compositional matrix adjust.
 Identities = 185/342 (54%), Positives = 222/342 (64%), Gaps = 46/342 (13%)

Query: 5   NSWILPLKVFFISTGVLSIALFCKSSVPFVMDFSVSRAPVIWSSFVSWLKPPYLYIIINA 64
            S  L L++  ISTG+LS+AL CK SVP V++FSV +AP +WSS  SWLKPPYLY+I+N 
Sbjct: 2   GSLSLSLQIVMISTGILSLALVCKVSVPLVINFSVQQAPSLWSSLCSWLKPPYLYVILNC 61

Query: 65  IIIIIAASSHLYQN------DHVPSTDSTPS-------------------------DVEY 93
           III IAASS  + +      DH       P                           VE 
Sbjct: 62  IIITIAASSRFHHSHGDNNKDHHQEVPPAPKISLPEPDHHFPYEIKVSTAEYYGGLPVEE 121

Query: 94  EMKYEQQQMIVVAEEENKATVFEEKSVVVSGDDAQVEVGNYGD----AAPWTPPQRTDSL 149
           E+ YEQ+++     E+  A VFE+KS V +    +V      D     + W P +R D  
Sbjct: 122 EVVYEQREV-----EKVSADVFEDKSTVTANGSLEVVEDKDEDFVISKSTWVPSKRIDPS 176

Query: 150 EILTDFHLLAEEEKPLVSARFGHRKPIKSSPEDGKKLRVTKPRRHETLENTWKTITEGRA 209
           E  +   LL   EKPL+SARFGHRKP+K+SPE G+ LRV KP+R ETLENTWK ITEGR 
Sbjct: 177 E--SQPELLIPAEKPLISARFGHRKPVKASPEGGRALRVAKPKRQETLENTWKMITEGRP 234

Query: 210 MPLTRHMKKSDTWENHGRQV-NVDPLLVKKSETFKDRTNFQLPPVN--NSPGSA-GKLRK 265
           MPLTRH+KKSDT++ HGR V   D  L KKSET KDRTN+QLPP +  NSP S+ GKLRK
Sbjct: 235 MPLTRHLKKSDTFDYHGRPVCEADSRLAKKSETLKDRTNYQLPPGSNGNSPASSGGKLRK 294

Query: 266 EPSLSQDELNRRVEAFIKKFNDEMRLQRQESLRQYQEMISRG 307
           EPSLSQDELNRRVEAFIKKFNDEMR+QRQESL QY+EMI+RG
Sbjct: 295 EPSLSQDELNRRVEAFIKKFNDEMRMQRQESLNQYKEMINRG 336

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|3264828|gb|AAC33276.1| cotton fiber expressed protein 1 [Gossypium hirsutum]

 Score =  323 bits (829), Expect = 4e-86,   Method: Compositional matrix adjust.
 Identities = 192/341 (56%), Positives = 229/341 (67%), Gaps = 45/341 (13%)

Query: 1   MVFSNSWILPLKVFFISTGVLSIALFCKSSVPFVMDFSVSRAPVIWSSFVSWLKPPYLYI 60
           M  +++WIL LK+  ISTG+L IAL  K SVP V++FSVS+AP+ WS F SWLKPPYLY+
Sbjct: 1   MASASTWILSLKLLLISTGILGIALGLKISVPLVLEFSVSQAPLWWSGFRSWLKPPYLYV 60

Query: 61  IINAIIIIIAASSHLYQNDHVP------------STDSTPSDVEYEMK------------ 96
           +IN III IAASS   QN+               S D  P  VEY+ K            
Sbjct: 61  VINGIIITIAASSRFNQNNGEKDQMEQMQPRPKISEDQQPI-VEYDTKSGWGSDAVESSD 119

Query: 97  --YEQQQMIVVAEEENKATVFEEKSVVVSGDDAQVEVGN--YGDAAPWTPPQRTDSLEIL 152
             YE+ Q      EE    V EE+S V   DD     GN      + W PP RTDS EI 
Sbjct: 120 FVYEENQR----GEEVATRVSEEESNVAVEDDRD---GNEFVISKSEWIPPSRTDSSEIP 172

Query: 153 TDFHLLAEEEKPLVSARFGHRKPIKSSPEDGKKLRVTKPRRHETLENTWKTITEGRAMPL 212
            D  L+  +EKP  S+R GHRKP+K +PE G+ L+  KP+RHETLENTWK ITEG++MPL
Sbjct: 173 LDALLI--QEKPAPSSRSGHRKPVKVNPEGGRALKAAKPKRHETLENTWKMITEGKSMPL 230

Query: 213 TRHMKKSDTWENHGRQVNVDPL----LVKKSETFKDRTNFQLPP--VNNSPGSAGKLRKE 266
           +RH+KKSDTWENHGR +NV+ L    L+KKSETF+DRTN+QLPP  V++ P S GKLRKE
Sbjct: 231 SRHLKKSDTWENHGRDINVEALTSSPLMKKSETFRDRTNYQLPPEQVSSFPAS-GKLRKE 289

Query: 267 PSLSQDELNRRVEAFIKKFNDEMRLQRQESLRQYQEMISRG 307
           PSLSQDELNRRVEAFIKKFNDEMRLQRQESL QY EM++RG
Sbjct: 290 PSLSQDELNRRVEAFIKKFNDEMRLQRQESLNQYMEMVNRG 330

Source: Gossypium hirsutum

Species: Gossypium hirsutum

Genus: Gossypium

Family: Malvaceae

Order: Malvales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224114045|ref|XP_002316652.1| predicted protein [Populus trichocarpa] gi|222859717|gb|EEE97264.1| predicted protein [Populus trichocarpa]

 Score =  306 bits (785), Expect = 6e-81,   Method: Compositional matrix adjust.
 Identities = 184/321 (57%), Positives = 225/321 (70%), Gaps = 24/321 (7%)

Query: 9   LPLKVFFISTGVLSIALFCKSSVPFVMDFSVSRAPVIWSSFVSWLKPPYLYIIINAIIII 68
           L LKV  +ST VL ++L  K SVP V DFSV++AP++WSS +SWLKPPYLY+IIN III 
Sbjct: 6   LSLKVILLSTSVLFLSLCLKISVPLVHDFSVNQAPLLWSSILSWLKPPYLYVIINCIIIT 65

Query: 69  IAASSHLYQNDHVPSTDSTPSDVE------YEMKYEQQQMIVVAEEENKATVFEEKSVV- 121
           IAASS  + +    ++ +T   +E       E+ Y+ ++        ++  V E+K +V 
Sbjct: 66  IAASSRFHHSHSSANSTTTHDQIEKIPMDEAEIDYQDREEEREEAAHHEQVVIEDKGIVN 125

Query: 122 ---VSGDDAQVEVGNYG-DAAPWTPP-QRTDSLE---ILTDFHLLAEEEKPLVSARFGHR 173
              V  D     V ++    + W PP +R DS E   +L D   L+  EKPLVS+RFGHR
Sbjct: 126 AVAVLEDSKNETVDDFVLSKSTWVPPFKRIDSSENNLLLPDN--LSPVEKPLVSSRFGHR 183

Query: 174 KPIKSSPEDGKKLRVTKPRRHETLENTWKTITEGRAMPLTRHMKKS----DTWENHGRQV 229
           K +K+SPE G+ LRV KP+RHETLENTWKTITEGRAMP+TRH+KKS    DTWENHG Q 
Sbjct: 184 KFVKASPEGGRALRVAKPKRHETLENTWKTITEGRAMPITRHVKKSETFKDTWENHGSQF 243

Query: 230 N---VDPLLVKKSETFKDRTNFQLPPVNNSPGSAGKLRKEPSLSQDELNRRVEAFIKKFN 286
           N   VDP  VKKS TFKDRTN+QLP VN+S  S+GKLRKEPSLSQDELNRRVEAFIKKFN
Sbjct: 244 NTSVVDPHEVKKSTTFKDRTNYQLPLVNSSSPSSGKLRKEPSLSQDELNRRVEAFIKKFN 303

Query: 287 DEMRLQRQESLRQYQEMISRG 307
           +EMRLQRQESL QY+EM SRG
Sbjct: 304 EEMRLQRQESLNQYKEMTSRG 324

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359496721|ref|XP_002273372.2| PREDICTED: uncharacterized protein LOC100244739 [Vitis vinifera]

 Score =  296 bits (758), Expect = 9e-78,   Method: Compositional matrix adjust.
 Identities = 182/330 (55%), Positives = 222/330 (67%), Gaps = 35/330 (10%)

Query: 4   SNSWILPLKVFFISTGVLSIALFCKSSVPFVMDFSVSRAPVIWSSFVSWLKPPYLYIIIN 63
           S++W+L LKV  IS GV+S+A+  + S+P + +F+VS  PV+WSSF SWLKPPYLY+IIN
Sbjct: 8   SSTWLLSLKVALISIGVVSMAVILRQSIPVISEFAVSGVPVMWSSFRSWLKPPYLYVIIN 67

Query: 64  AIIIIIAASSHLYQNDHVPSTDSTPSDVE-------YEMK-------------YEQQQMI 103
            III IAASS  ++ +H    ++   D E       YEMK             YEQ++ +
Sbjct: 68  GIIITIAASSKFHRMNHQDRPETAAKDPEDERTEFTYEMKNPPEFVGLETPIVYEQRE-V 126

Query: 104 VVAEEENKATVFEEKSVVVSGDDAQVEVGNYGDAAPWTPPQRTDSLEILTDFHLLAEEEK 163
            ++E +N A      S VV  ++  V   +     P +P  R +S EI      L   EK
Sbjct: 127 TISEVKNVA-----DSPVVEDEEELVISRSTTPPLPPSPLLRRESSEI--PLECLLSTEK 179

Query: 164 PLVSARFGHRKPIKSSPE--DGKKLRVTKPRRHETLENTWKTITEGRAMPLTRHMKKSDT 221
           PLVS+RFGHRKPIK+SPE   GK LRV+KP+RHETLENTWK IT+GR MPLTRH+KKSDT
Sbjct: 180 PLVSSRFGHRKPIKASPEASGGKVLRVSKPKRHETLENTWKMITDGRHMPLTRHLKKSDT 239

Query: 222 WENHGRQVNV----DPLLVKKSETFKDRTNFQLPPVNNSPGSAGKLRKEPSLSQDELNRR 277
           WENHGR + V     P  V KSETFKDRTN   PP   SP  + KLRK+PSLSQDELNRR
Sbjct: 240 WENHGRHIVVREDSSPQRVNKSETFKDRTN-NPPPSLTSPLDSVKLRKDPSLSQDELNRR 298

Query: 278 VEAFIKKFNDEMRLQRQESLRQYQEMISRG 307
           VEAFIKKFN+EMRLQRQESL QY+EMISRG
Sbjct: 299 VEAFIKKFNEEMRLQRQESLNQYKEMISRG 328

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|118481177|gb|ABK92540.1| unknown [Populus trichocarpa]

 Score =  295 bits (755), Expect = 2e-77,   Method: Compositional matrix adjust.
 Identities = 183/345 (53%), Positives = 224/345 (64%), Gaps = 48/345 (13%)

Query: 9   LPLKVFFISTGVLSIALFCKSSVPFVMDFSVSRAPVIWSSFVSWLKPPYLYIIINAIIII 68
           L LKV  +ST VL ++L  K SVP V DFSV++AP++WSS +SWLKPPYLY+IIN III 
Sbjct: 6   LSLKVILLSTSVLFLSLCLKISVPLVHDFSVNQAPLLWSSILSWLKPPYLYVIINCIIIT 65

Query: 69  IAASSHLYQNDHVPSTDSTPSDVE------------------------------YEMKYE 98
           IAASS  + +    ++ +T   +E                               E+ Y+
Sbjct: 66  IAASSRFHHSHSSANSTTTHDQIEKIPMDEYLHDEMKISTVEIQTSHFGGLESRAEIDYQ 125

Query: 99  QQQMIVVAEEENKATVFEEKSVV----VSGDDAQVEVGNYG-DAAPWTPP-QRTDSLE-- 150
            ++        ++  V E+K +V    V  D     V ++    + W PP +R DS E  
Sbjct: 126 DREEEREEAAHHEQVVIEDKGIVNAVAVLEDSKNETVDDFVLSKSTWVPPFKRIDSSENN 185

Query: 151 -ILTDFHLLAEEEKPLVSARFGHRKPIKSSPEDGKKLRVTKPRRHETLENTWKTITEGRA 209
            +L D   L+  EKPLVS+RFGHRK +K+SPE G+ LRV KP+RHETLENTWKTITEGRA
Sbjct: 186 LLLPDN--LSPVEKPLVSSRFGHRKFVKASPEGGRALRVAKPKRHETLENTWKTITEGRA 243

Query: 210 MPLTRHMKKS----DTWENHGRQVN---VDPLLVKKSETFKDRTNFQLPPVNNSPGSAGK 262
           MP+TRH+KKS    DTWENHG Q N   VDP  VKKS TFKD TN+QLP VN+S  S+GK
Sbjct: 244 MPITRHVKKSETFKDTWENHGSQFNTSVVDPHEVKKSTTFKDTTNYQLPLVNSSSPSSGK 303

Query: 263 LRKEPSLSQDELNRRVEAFIKKFNDEMRLQRQESLRQYQEMISRG 307
           LRKEPSLSQDELNRRVEAFIKKFN+EMRLQRQESL QY+EM SRG
Sbjct: 304 LRKEPSLSQDELNRRVEAFIKKFNEEMRLQRQESLNQYKEMTSRG 348

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147766669|emb|CAN65070.1| hypothetical protein VITISV_003953 [Vitis vinifera]

 Score =  291 bits (745), Expect = 2e-76,   Method: Compositional matrix adjust.
 Identities = 178/324 (54%), Positives = 219/324 (67%), Gaps = 23/324 (7%)

Query: 4   SNSWILPLKVFFISTGVLSIALFCKSSVPFVMDFSVSRAPVIWSSFVSWLKPPYLYIIIN 63
           S++W+L LKV  IS GV+S+A+  + S+P + +F+VS  PV WSSF SWLKPPYLY+IIN
Sbjct: 85  SSTWLLSLKVALISIGVVSMAVILRQSIPVISEFAVSGVPVXWSSFRSWLKPPYLYVIIN 144

Query: 64  AIIIIIAASSHLYQNDHVPSTDSTPSDVE-------YEMKYEQQQMIV---VAEEENKAT 113
            III IAASS  ++ +H    ++   D E       YEMK   + + +   +  E+ + T
Sbjct: 145 GIIITIAASSKFHRMNHQDRPETAAKDPEDERTEFTYEMKNPPEFVGLETPIVYEQREVT 204

Query: 114 VFEEKSVV---VSGDDAQVEVGN-YGDAAPWTPPQRTDSLEILTDFHLLAEEEKPLVSAR 169
           + E K V    V  D+ ++ +        P +P  R +S EI      L   EKPLVS+R
Sbjct: 205 ISEVKXVADSPVVEDEEELXISRSTTPPLPPSPLLRRESSEI--PLECLLSTEKPLVSSR 262

Query: 170 FGHRKPIKSSPE--DGKKLRVTKPRRHETLENTWKTITEGRAMPLTRHMKKSDTWENHGR 227
           FGHRKPIK+SPE   GK LRV+KP+RHETLENTWK IT+GR MPLTRH+KKSDTWENHGR
Sbjct: 263 FGHRKPIKASPEASGGKVLRVSKPKRHETLENTWKMITDGRHMPLTRHLKKSDTWENHGR 322

Query: 228 QVNV----DPLLVKKSETFKDRTNFQLPPVNNSPGSAGKLRKEPSLSQDELNRRVEAFIK 283
            + V     P  V KSETFKDRTN   PP   SP  + KLRK+PSLSQDELNRRVEAFIK
Sbjct: 323 HIVVREDSSPQRVNKSETFKDRTN-NPPPSLTSPLDSVKLRKDPSLSQDELNRRVEAFIK 381

Query: 284 KFNDEMRLQRQESLRQYQEMISRG 307
           KFN+EM LQRQESL QY+EMISRG
Sbjct: 382 KFNEEMXLQRQESLNQYKEMISRG 405

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225461324|ref|XP_002284551.1| PREDICTED: uncharacterized protein LOC100267532 [Vitis vinifera]

 Score =  266 bits (680), Expect = 8e-69,   Method: Compositional matrix adjust.
 Identities = 166/320 (51%), Positives = 212/320 (66%), Gaps = 25/320 (7%)

Query: 4   SNSWILPLKVFFISTGVLSIALFCKSSVPFVMDFSVSRAPVIWSSFVSWLKPPYLYIIIN 63
           S +W L LKV  ISTGV+S+A+  K SVP V++F+VS  P IWS  +SWL+PPYLY++IN
Sbjct: 8   STNWGLSLKVLLISTGVVSMAVALKISVPVVVEFAVSEVPSIWSFVLSWLRPPYLYLVIN 67

Query: 64  AIIIIIAASSHLYQNDHVPS-----TDSTPSDVEYEMKYEQQQMIVVAEEENK-ATVFEE 117
            IIIII ASS L      P      T S+   ++Y + Y       V E   +   V++ 
Sbjct: 68  FIIIIIVASSKLQHKVEEPPETAEITISSAVAMDYAVPYNGVVSKNVVELRPEFGYVYDA 127

Query: 118 KSVV-VSGDDAQVEVG----NYGDA-----APWTPPQRTDSLEILTDFHLLAEEEKPLVS 167
            +VV     DA+ E+     N  D      + WTP +R DS+E +         EKPLVS
Sbjct: 128 NAVVEARAPDAKTEMKGLEMNDSDEFTISRSSWTP-ERKDSMENMIP------AEKPLVS 180

Query: 168 ARFGHRKPIKSSPEDGKKLRVTKPRRHETLENTWKTITEGRAMPLTRHMKKSDTWENHGR 227
            RFGHR+ +KSSPE GK L V+KP+RH+TLE+TWKTIT+GR MPLTRH+KK+D+ E+   
Sbjct: 181 MRFGHRRAVKSSPEAGKVLGVSKPKRHDTLESTWKTITDGRPMPLTRHLKKADSLESQRC 240

Query: 228 QVNVDPLLVKKSETFKDRTNFQLPPVNNSPGSAGKLRKEPSLSQDELNRRVEAFIKKFND 287
            +++ P  VKKSETF DR++     V +SPGS GK+++EPSLSQDELNRRVEAFIKKFN+
Sbjct: 241 SIDLTPQKVKKSETFTDRSSTNS-SVASSPGS-GKMKREPSLSQDELNRRVEAFIKKFNE 298

Query: 288 EMRLQRQESLRQYQEMISRG 307
           EMRLQRQESL QY EMI RG
Sbjct: 299 EMRLQRQESLNQYNEMIRRG 318

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|302144236|emb|CBI23474.3| unnamed protein product [Vitis vinifera]

 Score =  266 bits (679), Expect = 1e-68,   Method: Compositional matrix adjust.
 Identities = 166/326 (50%), Positives = 206/326 (63%), Gaps = 53/326 (16%)

Query: 4   SNSWILPLKVFFISTGVLSIALFCKSSVPFVMDFSVSRAPVIWSSFVSWLKPPYLYIIIN 63
           S++W+L LKV  IS GV+S+A+  + S+P + +F+VS  PV+WSSF SWLKPPYLY+IIN
Sbjct: 8   SSTWLLSLKVALISIGVVSMAVILRQSIPVISEFAVSGVPVMWSSFRSWLKPPYLYVIIN 67

Query: 64  AIIIIIAASSHLYQNDHVPSTDSTPSDVE-------YEMK-------------YEQQQMI 103
            III IAASS  ++ +H    ++   D E       YEMK             YEQ++ +
Sbjct: 68  GIIITIAASSKFHRMNHQDRPETAAKDPEDERTEFTYEMKNPPEFVGLETPIVYEQRE-V 126

Query: 104 VVAEEENKATVFEEKSVVVSGDDAQVEVGNYGDAAPWTPPQRTDSLEILTDFHLLAEEEK 163
            ++E +N A      S VV  ++  V   +     P +P  R +S EI      L   EK
Sbjct: 127 TISEVKNVA-----DSPVVEDEEELVISRSTTPPLPPSPLLRRESSEI--PLECLLSTEK 179

Query: 164 PLVSARFGHRKPIKSSPE--DGKKLRVTKPRRHETLENTWKTITEGRAMPLTRHMKKSDT 221
           PLVS+RFGHRKPIK+SPE   GK LRV+KP+RHETLENTWK IT+GR MPLTRH+KKSDT
Sbjct: 180 PLVSSRFGHRKPIKASPEASGGKVLRVSKPKRHETLENTWKMITDGRHMPLTRHLKKSDT 239

Query: 222 WENHGRQVNVDPLLVKKSETFKDRTNFQLPPVNNSPGSAGKLRKEPSLSQDELNRRVEAF 281
           WENHGR +                       V     S  +LRK+PSLSQDELNRRVEAF
Sbjct: 240 WENHGRHI-----------------------VVREDSSPQRLRKDPSLSQDELNRRVEAF 276

Query: 282 IKKFNDEMRLQRQESLRQYQEMISRG 307
           IKKFN+EMRLQRQESL QY+EMISRG
Sbjct: 277 IKKFNEEMRLQRQESLNQYKEMISRG 302

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|3264830|gb|AAC33277.1| cotton fiber expressed protein 2 [Gossypium hirsutum]

 Score =  263 bits (673), Expect = 5e-68,   Method: Compositional matrix adjust.
 Identities = 150/284 (52%), Positives = 182/284 (64%), Gaps = 42/284 (14%)

Query: 1   MVFSNSWILPLKVFFISTGVLSIALFCKSSVPFVMDFSVSRAPVIWSSFVSWLKPPYLYI 60
           M  +++WIL LKVF ISTG+L I L  K SVP V++FSVS+AP+ WS F SWLKPPYLY+
Sbjct: 1   MATASTWILSLKVFLISTGILGIVLGLKISVPLVLEFSVSQAPLWWSGFRSWLKPPYLYV 60

Query: 61  IINAIIIIIAASSHLYQNDHVP------------STDSTPSDVEYEMK------------ 96
           +IN III IAASS   QN+               S D  P  VEYE K            
Sbjct: 61  VINGIIITIAASSRFNQNNGEKDQMEQMQPRPKISADQQPM-VEYETKSGWDSDAVESSD 119

Query: 97  --YEQQQMIVVAEEENKATVFEEKSVVVSGDDAQVEVGN--YGDAAPWTPPQRTDSLEIL 152
             YE+ Q      EE +  V EE+S V   DD     GN      + W PP RTDS EI 
Sbjct: 120 FVYEENQR----GEEVETRVSEEESNVAVEDDRD---GNEFVISKSEWIPPSRTDSSEIP 172

Query: 153 TDFHLLAEEEKPLVSARFGHRKPIKSSPEDGKKLRVTKPRRHETLENTWKTITEGRAMPL 212
            D  L+  +EKP  S+RFGHRKP+K +PE G+ L+V KP+RHETLENTWK ITEG++MPL
Sbjct: 173 LDALLI--QEKPAPSSRFGHRKPVKVNPEGGRALKVAKPKRHETLENTWKMITEGKSMPL 230

Query: 213 TRHMKKSDTWENHGRQVNVDPL----LVKKSETFKDRTNFQLPP 252
           +RH+KKSDTWENHGR +NV+ L    L+KKSETF+DRTN+QLPP
Sbjct: 231 SRHLKKSDTWENHGRDINVEALTSSPLMKKSETFRDRTNYQLPP 274

Source: Gossypium hirsutum

Species: Gossypium hirsutum

Genus: Gossypium

Family: Malvaceae

Order: Malvales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	308
TAIR|locus:2008445	344	AT1G61260 "AT1G61260" [Arabido	0.616	0.552	0.497	2.6e-61
TAIR|locus:2202094	308	AT1G11210 "AT1G11210" [Arabido	0.935	0.935	0.373	2.1e-36
TAIR|locus:2162570	326	AT5G54300 "AT5G54300" [Arabido	0.493	0.466	0.476	1e-29
TAIR|locus:2202079	310	AT1G11220 "AT1G11220" [Arabido	0.912	0.906	0.318	2.9e-25
TAIR|locus:2138416	303	AT4G04990 "AT4G04990" [Arabido	0.129	0.132	0.65	2.5e-06

TAIR|locus:2008445 AT1G61260 "AT1G61260" [Arabidopsis thaliana (taxid:3702)]

 Score = 444 (161.4 bits), Expect = 2.6e-61, Sum P(2) = 2.6e-61
 Identities = 108/217 (49%), Positives = 146/217 (67%)

Query:    98 EQQQMIVVAEEENKATVFEE-KSVVVSGDDAQVEVGNYGDAAPWTPPQRTDSLEILTDFH 156
             E+++ I+ +    +  + EE KSV++  +   VE     D  P  PP   +S E L    
Sbjct:   149 EEEKKIIDSAATAEDEIEEELKSVIMVENSDLVE----SDVIP--PPMMIES-ENLPPI- 200

Query:   157 LLAEEEKPLVSARFGHRKPIKSSPEDGKKLRVTKPRRHETLENTWKTITEGRAMPLTRHM 216
                  EKPLV++RFGHRK +K+S E G+ LRVTKP+++ETLENTWK ITEG++ PLTR +
Sbjct:   201 -----EKPLVTSRFGHRKLMKASQEGGRALRVTKPKKNETLENTWKMITEGKSTPLTRQL 255

Query:   217 -KKSDTW---ENHGRQVNVDPLLVKKSETFKDRTNF-QLPPVNNSPGSAGKLRKEPSLSQ 271
              ++SDT+   ++ G    V P+  KKS+TF+DRTN+ QL           K+RKEPSLSQ
Sbjct:   256 YRRSDTFGRGDSGGVDGEVKPVY-KKSDTFRDRTNYYQL-------AETAKVRKEPSLSQ 307

Query:   272 DELNRRVEAFIKKFNDEMRLQRQESLRQYQEMISRGI 308
             +ELNRRVEAFIKKFN+EM+LQR ESLRQY+E+ SRG+
Sbjct:   308 EELNRRVEAFIKKFNEEMKLQRMESLRQYKEITSRGV 344

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0009507 "chloroplast" evidence=ISM

GO:0010200 "response to chitin" evidence=RCA

TAIR|locus:2202094 AT1G11210 "AT1G11210" [Arabidopsis thaliana (taxid:3702)]

 Score = 392 (143.0 bits), Expect = 2.1e-36, P = 2.1e-36
 Identities = 119/319 (37%), Positives = 167/319 (52%)

Query:     6 SWILPLKVFFISTGVLSIALFCKSSVPFVMDFSVSRAPVIWSSFVSWLKPPYLYXXXXXX 65
             SW   +K   ISTGV++ A+  K  VP  MDFS +  P+I SSF++WLKPPYLY      
Sbjct:     3 SW---MKAVLISTGVVATAMHLKVIVPVAMDFSQN--PIILSSFLTWLKPPYLYVITNVI 57

Query:    66 XXXXXXSSHLYQ-NDHVPSTDSTPSDVEYEMKYEQQQMIVVAEEE-NKATVFEEKSVVVS 123
                   S  +   + HV   D   S    + K++     +V E    + T  ++      
Sbjct:    58 IIVVGVSYRITTVSSHVDGKDYEAS-YSGDNKFQTDHQQIVQEAPLRRRTETKDADFGFI 116

Query:   124 GDDAQV----EVGNYGDAAPWTPPQRTDS-LEILTDFHLLAEEEKPLVSARFGHRKPI-K 177
             G   Q+    EV       P T  +     + +++        EKPLV+AR G +KP+ K
Sbjct:   117 GKVLQIVKEPEVVYEEKERPATVEEEEKKCIIVVSKSENQPPVEKPLVTARIGQKKPVVK 176

Query:   178 SSPEDG---KKLRVTKPRRHETLENTWKTITEGR--AMPLTRHMKKSDTWENHGRQVNVD 232
             ++P +    + LRV KP+R+ETLENTWK I EG    +PLT + K+ DT+   G +    
Sbjct:   177 TTPAERNSMRALRVAKPKRNETLENTWKMIMEGNKSTLPLTSYYKRPDTF-GLGEETKQS 235

Query:   233 PLLVKKSETFKDRTN-FQ-LPPVNNSPGSAGKLRK-EPSLSQDELNRRVEAFIKKFNDEM 289
              +L KKSETF DRTN +Q LPP    P    K++K + S S+DELNR+VEAFIKK NDE 
Sbjct:   236 GVL-KKSETFSDRTNCYQSLPP---PPPPLVKVKKVKVSRSRDELNRKVEAFIKKCNDE- 290

Query:   290 RLQRQESLRQYQEMISRGI 308
                R  S++   E+   G+
Sbjct:   291 ---RFASMKLDNEVARHGL 306

GO:0003674 "molecular_function" evidence=ND

GO:0006979 "response to oxidative stress" evidence=IMP

GO:0009409 "response to cold" evidence=RCA

GO:0009414 "response to water deprivation" evidence=RCA

GO:0009737 "response to abscisic acid stimulus" evidence=RCA

TAIR|locus:2162570 AT5G54300 "AT5G54300" [Arabidopsis thaliana (taxid:3702)]

 Score = 329 (120.9 bits), Expect = 1.0e-29, P = 1.0e-29
 Identities = 82/172 (47%), Positives = 102/172 (59%)

Query:   142 PPQRTDSLEILTDFHLLAEEEKPLVSARFGHRKPIKSSPEDGKK---LRVTKP-RRHETL 197
             P  + DS EI    H      KP    RF  +K +KS+ E G K   L VTKP RR +TL
Sbjct:   166 PKLKNDSPEISILKH---STRKP---PRFNQQKSLKSNSEGGNKKTALGVTKPPRRQDTL 219

Query:   198 ENTWKTITEGRAMPLTRHMKKSDTWEN--HGRQVNVDPLLVKKSETFKDRTNFQLPPVNN 255
             E TWK ITEGR+ PLT+H+ KSDTW+   H +    +   + KSE  KD        +N 
Sbjct:   220 ETTWKKITEGRSTPLTKHLTKSDTWQERAHVQSSPENKEKMTKSENLKD--------INT 271

Query:   256 SPGSAGKLRKEPSLSQDELNRRVEAFIKKFNDEMRLQRQESLRQYQEMISRG 307
                    L++EPS  Q+ELNRRVEAFIKKFN+EMRLQR ESL +Y EM++ G
Sbjct:   272 PTEEKTVLKREPSPGQEELNRRVEAFIKKFNEEMRLQRLESLAKYNEMVNGG 323

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0009507 "chloroplast" evidence=ISM

GO:0015824 "proline transport" evidence=RCA

TAIR|locus:2202079 AT1G11220 "AT1G11220" [Arabidopsis thaliana (taxid:3702)]

 Score = 287 (106.1 bits), Expect = 2.9e-25, P = 2.9e-25
 Identities = 101/317 (31%), Positives = 157/317 (49%)

Query:     6 SWILPLKVFFISTGVLSIALFCKSSVPFVMDFSVSRAPVIWSSFVSWLKPPYLYXXXXXX 65
             S ++ +K   I+ G+++++LF KSSVP  +DFSVSR P+ WSSF+SWLKPPYL+      
Sbjct:     3 SSMISIKAALITAGIVAVSLFLKSSVPIAVDFSVSRFPIFWSSFLSWLKPPYLFVAINVI 62

Query:    66 XXXXXXSSHLYQNDHVPSTDSTPSDV----EYEM-----KYEQQQMI-------VVAEEE 109
                   SS  YQ+  V   D    ++    EY +     +   ++++        VA  +
Sbjct:    63 ITIIMASSKFYQS--VGEQDGEDDEILLGGEYTIPNVITQAPPRRLVDLDADFDFVATVQ 120

Query:   110 NKATVFEEKSVVVSGDDAQVEVGNYGDAAPWTPPQRTD-SLEILTDFHLLAEEEKPLVSA 168
             +   V E + + V  ++ ++ +    +        R++ +  I+ +   L   EKPLVSA
Sbjct:   121 SPILVAEVEILEVVFEEKEMAISGQTNGGDEFAVMRSELNQPIMEESENLPPAEKPLVSA 180

Query:   169 RFGHRKPIKSSPED-GKKLRVTKPRRHETLENTWKTITEGRAMPLTRHMKKSDTWENHGR 227
             R GHRKPIK+S +   +K +  K  +     N  +T+     M +T    KS     H R
Sbjct:   181 RSGHRKPIKASSKGVNRKKKALKVVK----PNRHETLENTWNM-ITEE-GKSTPLTCHYR 234

Query:   228 QVNVDPLLVK---KSETFKDRTNFQLPPVN-NSPG--SAGKLRKEPSLSQDELNRRVEAF 281
             + ++  L      K    K  T   +     +SP   S  K++KE S S++ELNRRVEAF
Sbjct:   235 KTSMSGLNAGGDVKPVLRKAETFRDVTNYRQSSPTVTSPVKMKKEMSPSREELNRRVEAF 294

Query:   282 IKKFNDEMRLQRQESLR 298
             IKK  +E    R ESL+
Sbjct:   295 IKKCKEE----RLESLK 307

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0009507 "chloroplast" evidence=ISM

TAIR|locus:2138416 AT4G04990 "AT4G04990" [Arabidopsis thaliana (taxid:3702)]

 Score = 133 (51.9 bits), Expect = 2.5e-06, P = 2.5e-06
 Identities = 26/40 (65%), Positives = 34/40 (85%)

Query:   262 KLRKEPSLSQDELNRRVEAFIKKFNDEMRLQRQESLRQYQ 301
             KL+KE S+ ++ELN RVEAFI KF DEM+LQR ES+R+Y+
Sbjct:   255 KLKKELSMGREELNSRVEAFITKFKDEMKLQRLESVRRYK 294


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.315   0.131   0.384    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      308       296   0.00093  115 3  11 23  0.43    34
                                                     33  0.44    37


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  5
  No. of states in DFA:  610 (65 KB)
  Total size of DFA:  225 KB (2123 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  28.56u 0.14s 28.70t   Elapsed:  00:00:01
  Total cpu time:  28.56u 0.14s 28.70t   Elapsed:  00:00:01
  Start:  Fri May 10 09:21:48 2013   End:  Fri May 10 09:21:49 2013

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	308
pfam05553	38	pfam05553, DUF761, Cotton fibre expressed protein	3e-16
pfam14364	34	pfam14364, DUF4408, Domain of unknown function (DU	1e-12

>gnl|CDD|218633 pfam05553, DUF761, Cotton fibre expressed protein

 Score = 71.0 bits (175), Expect = 3e-16
 Identities = 23/38 (60%), Positives = 33/38 (86%)

Query: 270 SQDELNRRVEAFIKKFNDEMRLQRQESLRQYQEMISRG 307
           S DE++RR E FI +F +++RLQRQESL++YQEM++RG
Sbjct: 1   SDDEVDRRAEEFIARFREQLRLQRQESLKRYQEMLARG 38

This family consists of several plant proteins of unknown function. Three of the sequences (from Gossypium hirsutum) in this family are described as cotton fibre expressed proteins. The remaining sequences, found in Arabidopsis thaliana, are uncharacterized. Length = 38

>gnl|CDD|206532 pfam14364, DUF4408, Domain of unknown function (DUF4408)

 Score = 60.6 bits (148), Expect = 1e-12
 Identities = 20/34 (58%), Positives = 26/34 (76%)

Query: 42 APVIWSSFVSWLKPPYLYIIINAIIIIIAASSHL 75
           P +WSS +SWL PPYL++++N III I ASS L
Sbjct: 1  FPSLWSSLLSWLTPPYLFLVLNLIIITIVASSRL 34

This domain is found at the N-terminus of member of the DUF761 family pfam05553. Many members are plant proteins. Length = 34

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	308
PF05553	38	DUF761: Cotton fibre expressed protein; InterPro:	99.68
PF14364	34	DUF4408: Domain of unknown function (DUF4408)	99.48

>PF05553 DUF761: Cotton fibre expressed protein; InterPro: IPR008480 This family consists of several plant proteins of unknown function

Probab=99.68  E-value=4.8e-17  Score=113.07  Aligned_cols=38  Identities=63%  Similarity=1.069  Sum_probs=36.6

Q ss_pred             ChhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 021734          270 SQDELNRRVEAFIKKFNDEMRLQRQESLRQYQEMISRG  307 (308)
Q Consensus       270 ~~~evd~rAE~FI~kF~~qlrLQRqeS~~~y~eml~Rg  307 (308)
                      +++|||++||+||+|||+|||||||+|+++|+||++||
T Consensus         1 ~~~evd~rAe~FI~~f~~qlrlqr~~S~~ry~eml~Rg   38 (38)
T PF05553_consen    1 SDDEVDRRAEEFIAKFREQLRLQRQESLQRYQEMLARG   38 (38)
T ss_pred             CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence            46899999999999999999999999999999999998

Three of the sequences from Gossypium hirsutum (Upland cotton) in this family are described as G. hirsutum fibre expressed proteins []. The remaining sequences, found in Arabidopsis thaliana, are uncharacterised.

>PF14364 DUF4408: Domain of unknown function (DUF4408)

Probab=99.48  E-value=9.6e-15  Score=99.42  Aligned_cols=34  Identities=59%  Similarity=1.136  Sum_probs=32.9

Q ss_pred             chhHHHHHhhhcCCCeeeeeeheehhhhhhcccc
Q 021734           42 APVIWSSFVSWLKPPYLYIIINAIIIIIAASSHL   75 (308)
Q Consensus        42 lP~~ws~~~swltPpyLfi~~N~IIi~I~asSk~   75 (308)
                      +|++|+++++||+|||||+++|+||++|+++|||
T Consensus         1 ~p~l~~~~~s~ltP~~Lfv~~N~IIi~i~~~S~~   34 (34)
T PF14364_consen    1 FPSLWSSLRSWLTPPYLFVIVNLIIITIVASSRF   34 (34)
T ss_pred             CccHHHHHHHhcCCCeehhhhhhHHHHhhhhccC
Confidence            5999999999999999999999999999999986

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00