Citrus Sinensis ID: 021740

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------31
Protein Sequence
MEERRVHPDCINASNPYHECVDYCFRKIAEAKVRMVEDEREAVQASGSSGQSNTLASDVAEDLHHENPKLEAGSDSDNDKPAEEDVEGDFTKLTGRQKKLFELRLKMNEARKANQTAMVAEKKRMEPPQESRGISKQKWLEERKRKIGKLLDANGLDMTKAFMLDTQEAAEAKYKKWEKDPAPFGWDVFNQKALYDAYKKRTKNVEVDLEEYNKMKEADPEFYRDASSLQYGKSPKISEDKIDRMVKELKDREEKRNSFSRRRRFHEEKDIDSINDRNEHFNKKIERAFGKYTLEIKNNLERGTALPD
Secondary Structure (PSIPRED)
ccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHcccHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHccccccHHHHHHHHHHccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHccccccc
Secondary Structure Prediction (SSPRO)
cccccccccccccccccHHHHHHHHHHHHHHHHHHHHHcccccccccccccHHcccccHHcccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHcccccccHHHcHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccc
Coil and Loop (DISEMBL)
meerrvhpdcinasnpyheCVDYCFRKIAEAKVRMVEDEREAVqasgssgqsntlASDVAedlhhenpkleagsdsdndkpaeedvegdftkLTGRQKKLFELRLKMNEARKANQTAMVAEkkrmeppqesrgiskQKWLEERKRKIGKLldangldmtKAFMLDTQEAAEAKYKkwekdpapfgwdvfnQKALYDAYKKRTKNVEVDLEEYNkmkeadpefyrdasslqygkspkiseDKIDRMVKELKDREEKRNSFSRRrrfheekdidsiNDRNEHFNKKIERAFGKYTLEIKNnlergtalpd
Flexible Loop (DISEMBL)
meerrvhpdcinasnpyheCVDYCFRKIAEAKVRMVEDEREAvqasgssgqsnTLASDVAEDLHHEnpkleagsdsdndkpaeedvegdftkltgrQKKLFELRLKMNEARKANQtamvaekkrmeppqesrgiskqkwleERKRKIGklldangldmTKAFMLDTQEAAEAKYKKWEKDPAPFGWDVFNQKALYDAYKKRTKNVEVDLEEYNKMkeadpefyrdasslqygkspkisedkiDRMVKElkdreekrnsfsrrrrfheekdidsindrnehfNKKIERafgkytleiknnlergtalpd
Low Complexity Region (SEG)
MEERRVHPDCINASNPYHECVDYCFRKIAEAKVRMVEDEREAVQASGSSGQSNTLASDVAEDLHHENPKLEAGSDSDNDKPAEEDVEGDFTKLTGRQKKLFELRLKMNEARKANQTAMVAEKKRMEPPQESRGISKQKWLEERKRKIGKLLDANGLDMTKAFMLDTQeaaeakykkwekDPAPFGWDVFNQKALYDAYKKRTKNVEVDLEEYNKMKEADPEFYRDASSLQYGKSPKISEDKIDRMVKELKDREEKRNSFSRRRRFHEEKDIDSINDRNEHFNKKIERAFGKYTLEIKNNLERGTALPD
Disordered region (IsUnstruct)
*********CINASNPYHECVDYCFRKIAEAKVR****************************************************************************************************************IGKLLDANGLDMTKAFMLDTQEAAEAKYKKWEKDPAPFGWDVFNQKALYDAYKKRTKNVEVD****************************************************************************IERAFGKYTLEI************
Disordered Region (DISOPRED)
***RRVH*DCINASNPYHECVDYCFR*****************************************************************************************************************************************L**********************DVFNQKALYDAYKKRTKNVEV*********************LQYGKSPKISEDKIDRMVK***********************IDSINDRNEHFNKKIERAFGKYTLEIKNNLERGTA***
Disordered Region (DISEMBL)
MEERRVHPDCINASNPYHECVDYCFRKIAEAKVRMV*******************ASDVAEDLHHENP******************EGDFTKLTGRQKKLFELRLKMNEARKA***********************QKWLEERKRKIGKLLDANGLDMTKAFMLDTQEAAEAKYKKWEKDPAPFGWDVFNQKALYDAYKKRTKNVEVDLEEYNKMKEADPEFYRDASSLQYGKSPKISEDKIDRMVKEL***********RRRRFHEEKDIDSINDRNEHFNKKIERAFGKYTLEIKNNLERGTALPD
Disordered Region (DISPRO)
******HPDCINASNPYHECVDYCFRKIAEAKVRMVED*****************************************************K*TGRQKKLFELRLKMNEARKANQTAMVAEKKRMEPPQESRGISKQKWLEERKRKIGKLLDANGLDMTKAFMLDTQEAAEAKYKKWEKDPAPFGWDVFNQKALYDAYKKRTKNVEVDLEEYNKMKEADPEFYRDASSLQYGKSPKISEDKIDRMVKELKDREEKRNSFSRRRRFHEEKDIDSINDRNEHFNKKIERAFGKYTLEIKNNLERGT*L**
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MEERRVHPDCINASNPYHECVDYCFxxxxxxxxxxxxxxxxxxxxxGSSGQSNTLASDVAEDLHHENPKLEAGSDSDNDKPAEEDVEGDFTKLTGRQKKLFELRLKMNEARKANQTAMVAEKKRMEPPQESRGISKQKWLEERKRKIGKLLDANGLDMTKAFMLDTQEAAEAKYKKWEKDPAPFGWDVFNQKALxxxxxxxxxxxxxxxxxxxxxKEADPEFYRDASSLQYGKSPKISEDKIDRMVKELKDREEKRNSFSRRRRFHEEKDIDSINDRNEHFNKKIERAFGKYTLEIKNNLERGTALPD
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	308	2.2.26 [Sep-21-2011]
Q28G05	249	Pre-mRNA-splicing factor	yes	no	0.753	0.931	0.382	8e-27
Q6DGP2	238	Pre-mRNA-splicing factor	yes	no	0.668	0.865	0.370	9e-25
Q4QRB2	242	Pre-mRNA-splicing factor	yes	no	0.678	0.863	0.384	1e-24
Q9D198	242	Pre-mRNA-splicing factor	yes	no	0.678	0.863	0.384	1e-24
Q8AVQ6	240	Pre-mRNA-splicing factor	N/A	no	0.672	0.862	0.421	3e-24
Q6DV01	249	Pre-mRNA-splicing factor	N/A	no	0.672	0.831	0.383	5e-24
O95926	243	Pre-mRNA-splicing factor	yes	no	0.675	0.855	0.387	6e-24
Q9V5Q4	226	Pre-mRNA-splicing factor	yes	no	0.662	0.902	0.328	5e-17
Q28XK6	226	Pre-mRNA-splicing factor	yes	no	0.665	0.907	0.325	5e-16
Q612R3	233	Pre-mRNA-splicing factor	N/A	no	0.610	0.806	0.346	9e-10

>sp|Q28G05|SYF2_XENTR Pre-mRNA-splicing factor syf2 OS=Xenopus tropicalis GN=syf2 PE=2 SV=1

 Score =  121 bits (303), Expect = 8e-27,   Method: Compositional matrix adjust.
 Identities = 91/238 (38%), Positives = 132/238 (55%), Gaps = 6/238 (2%)

Query: 72  AGSDSDNDKPAEEDVEGDFTKLTGRQKKLFELRLKMNEARKANQTAMVAEKKRMEPPQES 131
           AG  S  + P     +    K   R +K  EL LK NEARK N   +V E KR + P   
Sbjct: 15  AGVSSKAESPPASTEDLAAQKREARLRKFRELHLKTNEARKLNHQEVVEEDKRQKLPSNW 74

Query: 132 RGISKQKWLEERKRKIGKLLDANGLDMTKAFMLD--TQEAAEAKYKKWEKDPAPFGWDVF 189
                +   E ++ +  +   ANG+D  +A +L+   ++A   + KK  K+P   G+  +
Sbjct: 75  EARKARLEWELKEEEKKRECAANGVDYERAKLLEISAEDAERWERKKKRKNP-DLGFSDY 133

Query: 190 NQKALYDAYKKRTKNVEVDLEEYNKMKEADPE-FYRDASSLQYGKSPKISEDKIDRMVKE 248
               L   Y++ TK ++ D+EEY   K+   E FY  + SL +G +   S+  IDRMV +
Sbjct: 134 AAAQLRQ-YQRLTKQIKPDMEEYEMEKQKQGEMFYPTSESLYHG-THIPSQSGIDRMVTD 191

Query: 249 LKDREEKRNSFSRRRRFHEEKDIDSINDRNEHFNKKIERAFGKYTLEIKNNLERGTAL 306
           L+ + EKR  +SRRR ++++ DID IN+RN  FNKK ER +GKYT EIK NLERGTA+
Sbjct: 192 LEKQIEKREKYSRRRAYNDDADIDYINERNAKFNKKAERFYGKYTAEIKQNLERGTAV 249

May be involved in pre-mRNA splicing.
Xenopus tropicalis (taxid: 8364)

>sp|Q6DGP2|SYF2_DANRE Pre-mRNA-splicing factor syf2 OS=Danio rerio GN=syf2 PE=2 SV=1

 Score =  114 bits (285), Expect = 9e-25,   Method: Compositional matrix adjust.
 Identities = 80/216 (37%), Positives = 127/216 (58%), Gaps = 10/216 (4%)

Query: 96  RQKKLFELRLKMNEARKANQTAMVAEKKRMEPPQESRG----ISKQKWLEERKRKIGKLL 151
           R +K  EL  K NEARK N   +V E KR++ P         +  +  ++++K++  +  
Sbjct: 28  RLRKFRELHFKRNEARKLNHQEVVEEDKRLKLPSNWEAKKARLEYELLVDQKKKECAER- 86

Query: 152 DANGLDMTKAFMLDTQEAAEAKYKKWEKDPAPFGWDVFNQKALYDAYKKRTKNVEVDLEE 211
                D  K   +  ++A   + KK +++P P G+  + +  L   Y++ TK ++ D+E 
Sbjct: 87  -GEDYDRVKLLEISAEDAERWERKKKKRNPDP-GFSGYAEAQLRQ-YQRLTKQIKPDMEN 143

Query: 212 YNKMKE-ADPEFYRDASSLQYGKSPKISEDKIDRMVKELKDREEKRNSFSRRRRFHEEKD 270
           Y K KE    +F+  ++SL YG +   S+D I+RMV +++ + EKR  +SRRR ++++ D
Sbjct: 144 YEKQKEECGEDFHPTSNSLIYG-THVPSKDSINRMVDDVEKQIEKRAKYSRRRAYNDDAD 202

Query: 271 IDSINDRNEHFNKKIERAFGKYTLEIKNNLERGTAL 306
           ID IN+RN  FNKK ER +GKYT EIK NLERGTA+
Sbjct: 203 IDYINERNAKFNKKAERFYGKYTAEIKQNLERGTAV 238

May be involved in pre-mRNA splicing.

Danio rerio (taxid: 7955)

>sp|Q4QRB2|SYF2_RAT Pre-mRNA-splicing factor SYF2 OS=Rattus norvegicus GN=Syf2 PE=2 SV=1

 Score =  114 bits (284), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 82/213 (38%), Positives = 122/213 (57%), Gaps = 4/213 (1%)

Query: 96  RQKKLFELRLKMNEARKANQTAMVAEKKRMEPPQESRGISKQKWLEERKRKIGKLLDANG 155
           R +K  EL LK NEARK N   +V E KR++ P        +   E ++ +  K   A G
Sbjct: 32  RLRKFRELHLKRNEARKLNHQEVVEEDKRLKLPANWEAKKARLEWELQEEEKKKECAARG 91

Query: 156 LDMTKAFMLDTQEAAEAKYKKWEKDPAP-FGWDVFNQKALYDAYKKRTKNVEVDLEEYNK 214
            D  K  +L+       ++++ +K   P  G+  +    L   Y + TK ++ D+E Y +
Sbjct: 92  EDYEKVKLLEISAEDAERWERRKKKKNPDLGFSDYAAAQLRQ-YHRLTKQIKPDMESYER 150

Query: 215 MKEADPE-FYRDASSLQYGKSPKISEDKIDRMVKELKDREEKRNSFSRRRRFHEEKDIDS 273
            +E   E F+  ++SL +G     SE+ IDRMV +L+ + EKR+ +SRRR ++++ DID 
Sbjct: 151 QREKHGEDFFPTSNSLLHGTHVPSSEE-IDRMVLDLEKQIEKRDKYSRRRPYNDDADIDY 209

Query: 274 INDRNEHFNKKIERAFGKYTLEIKNNLERGTAL 306
           IN+RN  FNKK ER +GKYT EIK NLERGTA+
Sbjct: 210 INERNAKFNKKAERFYGKYTAEIKQNLERGTAV 242

May be involved in pre-mRNA splicing.

Rattus norvegicus (taxid: 10116)

>sp|Q9D198|SYF2_MOUSE Pre-mRNA-splicing factor SYF2 OS=Mus musculus GN=Syf2 PE=2 SV=1

 Score =  114 bits (284), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 82/213 (38%), Positives = 122/213 (57%), Gaps = 4/213 (1%)

Query: 96  RQKKLFELRLKMNEARKANQTAMVAEKKRMEPPQESRGISKQKWLEERKRKIGKLLDANG 155
           R +K  EL LK NEARK N   +V E KR++ P        +   E ++ +  K   A G
Sbjct: 32  RLRKFRELHLKRNEARKLNHQEVVEEDKRLKLPANWEAKKARLEWELQEEEKKKECAARG 91

Query: 156 LDMTKAFMLDTQEAAEAKYKKWEKDPAP-FGWDVFNQKALYDAYKKRTKNVEVDLEEYNK 214
            D  K  +L+       ++++ +K   P  G+  +    L   Y + TK ++ D+E Y +
Sbjct: 92  EDYEKVKLLEISAEDAERWERRKKKKNPDLGFSDYAAAQLRQ-YHRLTKQIKPDMESYER 150

Query: 215 MKEADPE-FYRDASSLQYGKSPKISEDKIDRMVKELKDREEKRNSFSRRRRFHEEKDIDS 273
            +E   E F+  ++SL +G     SE+ IDRMV +L+ + EKR+ +SRRR ++++ DID 
Sbjct: 151 QREKHGEDFFPTSNSLLHGTHVPSSEE-IDRMVLDLEKQIEKRDKYSRRRPYNDDADIDY 209

Query: 274 INDRNEHFNKKIERAFGKYTLEIKNNLERGTAL 306
           IN+RN  FNKK ER +GKYT EIK NLERGTA+
Sbjct: 210 INERNAKFNKKAERFYGKYTAEIKQNLERGTAV 242

May be involved in pre-mRNA splicing.

Mus musculus (taxid: 10090)

>sp|Q8AVQ6|SYF2_XENLA Pre-mRNA-splicing factor syf2 OS=Xenopus laevis GN=syf2 PE=2 SV=1

 Score =  112 bits (280), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 94/223 (42%), Positives = 133/223 (59%), Gaps = 16/223 (7%)

Query: 92  KLTGRQKKLFELRLKMNEARKANQTAMVAEKKRMEPPQ--ESRGISKQKWL---EERKRK 146
           K   R +K  EL LK NEARK N   +V E KR + P   E+R  ++ +W    EE+KR+
Sbjct: 26  KREARLRKFRELHLKTNEARKLNHQEVVEEDKRQKLPSNWEARK-ARLEWELKNEEKKRE 84

Query: 147 IGKLLDANGLDMTKAFMLD--TQEAAEAKYKKWEKDPAPFGWDVFNQKALYDAYKKRTKN 204
                 ANG+D  +A +L+   ++A   + KK  K+P   G+  +    L   Y++ TK 
Sbjct: 85  CA----ANGVDFERAKLLEISAEDAERWERKKKRKNP-DLGFSDYAAAQLRQ-YQRLTKQ 138

Query: 205 VEVDLEEYNKMKEADPE-FYRDASSLQYGKSPKISEDKIDRMVKELKDREEKRNSFSRRR 263
           ++ D+EEY   KE   E FY  + SL +G +   S+  IDRMV +L+ + EKR  +SRRR
Sbjct: 139 IKPDMEEYEMEKEKQGELFYPTSDSLYHG-THVPSQSGIDRMVTDLEKQIEKREKYSRRR 197

Query: 264 RFHEEKDIDSINDRNEHFNKKIERAFGKYTLEIKNNLERGTAL 306
            ++++ DID IN+RN  FNKK ER +GKYT EIK NLERGTA+
Sbjct: 198 AYNDDADIDYINERNAKFNKKAERFYGKYTAEIKQNLERGTAV 240

May be involved in pre-mRNA splicing.

Xenopus laevis (taxid: 8355)

>sp|Q6DV01|SYF2_GECJA Pre-mRNA-splicing factor syf2 OS=Gecko japonicus GN=syf2 PE=2 SV=1

 Score =  111 bits (278), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 81/211 (38%), Positives = 123/211 (58%), Gaps = 4/211 (1%)

Query: 98  KKLFELRLKMNEARKANQTAMVAEKKRMEPPQESRGISKQKWLEERKRKIGKLLDANGLD 157
           +K  EL LK NEARK N   +V E KR++ P        +   E +  +  K   A G D
Sbjct: 41  RKFRELHLKRNEARKLNHQEVVEEDKRLKLPANWEAKKSRLEWELKVEEKKKECVAKGED 100

Query: 158 MTKAFMLD-TQEAAEAKYKKWEKDPAPFGWDVFNQKALYDAYKKRTKNVEVDLEEYNKMK 216
             +  +L+ + E AE   +K +K     G+  +   A    Y++ T+ ++ DLE+Y K++
Sbjct: 101 YERVKLLEISAEDAERFERKRKKRNPDLGFSDY-AAAQMRQYQRLTRQIKPDLEKYAKLR 159

Query: 217 E-ADPEFYRDASSLQYGKSPKISEDKIDRMVKELKDREEKRNSFSRRRRFHEEKDIDSIN 275
           E +  EFY  ++SL +G      E  +D+MV++L+ + +KR  +SRRR ++++ DID IN
Sbjct: 160 EESGEEFYPTSNSLLHGTHVPCKEG-VDKMVEDLEKQIQKREKYSRRRPYNDDADIDYIN 218

Query: 276 DRNEHFNKKIERAFGKYTLEIKNNLERGTAL 306
           +RN  FNKK ER +GKYT EIK NLERGTA+
Sbjct: 219 ERNAKFNKKAERFYGKYTAEIKQNLERGTAV 249

May be involved in pre-mRNA splicing.

Gecko japonicus (taxid: 146911)

>sp|O95926|SYF2_HUMAN Pre-mRNA-splicing factor SYF2 OS=Homo sapiens GN=SYF2 PE=1 SV=1

 Score =  111 bits (278), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 83/214 (38%), Positives = 124/214 (57%), Gaps = 6/214 (2%)

Query: 96  RQKKLFELRLKMNEARKANQTAMVAEKKRMEPPQESRGISKQKWLEERKRKIGKLLDANG 155
           R +K  EL L  NEARK N   +V E KR++ P        +   E ++ +  K   A G
Sbjct: 33  RLRKFRELHLMRNEARKLNHQEVVEEDKRLKLPANWEAKKARLEWELKEEEKKKECAARG 92

Query: 156 LDMTKAFMLD--TQEAAEAKYKKWEKDPAPFGWDVFNQKALYDAYKKRTKNVEVDLEEYN 213
            D  K  +L+   ++A   + KK  K+P   G+  +    L   Y + TK ++ D+E Y 
Sbjct: 93  EDYEKVKLLEISAEDAERWERKKKRKNP-DLGFSDYAAAQLRQ-YHRLTKQIKPDMETYE 150

Query: 214 KMKEADPE-FYRDASSLQYGKSPKISEDKIDRMVKELKDREEKRNSFSRRRRFHEEKDID 272
           +++E   E F+  ++SL +G     +E+ IDRMV +L+ + EKR+ +SRRR ++++ DID
Sbjct: 151 RLREKHGEEFFPTSNSLLHGTHVPSTEE-IDRMVIDLEKQIEKRDKYSRRRPYNDDADID 209

Query: 273 SINDRNEHFNKKIERAFGKYTLEIKNNLERGTAL 306
            IN+RN  FNKK ER +GKYT EIK NLERGTA+
Sbjct: 210 YINERNAKFNKKAERFYGKYTAEIKQNLERGTAV 243

May be involved in pre-mRNA splicing.

Homo sapiens (taxid: 9606)

>sp|Q9V5Q4|SYF2_DROME Pre-mRNA-splicing factor Syf2 OS=Drosophila melanogaster GN=Syf2 PE=2 SV=1

 Score = 88.6 bits (218), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 75/228 (32%), Positives = 120/228 (52%), Gaps = 24/228 (10%)

Query: 92  KLTGRQKKLFELRLKMNEARKANQTAMVAEKKRMEPPQESRGISKQKWLEERKRKIGKLL 151
           KL  R+ +L +L  K  EAR  N   +VAE  R + P+         W E RKR+   +L
Sbjct: 10  KLAERKARLLDLHKKRQEARTDNHQEVVAEDARKKLPKN--------W-EARKRQAEWIL 60

Query: 152 ---------DANGLDMTKAFMLDTQ--EAAEAKYKKWEKDPAPFGWDVFNQKALYDAYKK 200
                     A G D  +  +L+    +A   + KK  KD    G+  +  +     Y +
Sbjct: 61  ADDKARAEAQAAGKDYERLKLLEVSAVDADRIEKKKKRKDNPDLGFSTYEAQTARQ-YNR 119

Query: 201 RTKNVEV-DLEEYNKMKE-ADPEFYRDASSLQYGKSPKISEDKIDRMVKELKDREEKRNS 258
             K++   DLE+Y + KE     FY  A +  + ++ K +   I++MV +L+ + E+R  
Sbjct: 120 LVKSMPARDLEKYERQKEELGDAFYGGAHTTLHSRT-KDTPGAINKMVTDLEQQIERRKK 178

Query: 259 FSRRRRFHEEKDIDSINDRNEHFNKKIERAFGKYTLEIKNNLERGTAL 306
           +SRRR ++++ D+D IN+RN  FNKK++R + ++T EIK NLERGTA+
Sbjct: 179 YSRRRIYNDDADVDFINERNSKFNKKLDRFYSEHTAEIKQNLERGTAI 226

May be involved in pre-mRNA splicing.

Drosophila melanogaster (taxid: 7227)

>sp|Q28XK6|SYF2_DROPS Pre-mRNA-splicing factor Syf2 OS=Drosophila pseudoobscura pseudoobscura GN=Syf2 PE=3 SV=1

 Score = 85.1 bits (209), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 74/227 (32%), Positives = 113/227 (49%), Gaps = 22/227 (9%)

Query: 92  KLTGRQKKLFELRLKMNEARKANQTAMVAEKKRMEPPQESRGISKQKWLEERKRKIGKLL 151
           KL  R+ +L +L  K  EAR  N   +VAE  R + P+         W E RKR+   LL
Sbjct: 10  KLAERKARLLDLHKKRQEARTDNHQEVVAEDARKKLPK--------NW-EARKRQAEWLL 60

Query: 152 ---------DANGLDMTKAFMLDTQ--EAAEAKYKKWEKDPAPFGWDVFNQKALYDAYKK 200
                     A G D  +  +L+    +A   + KK  KD    G+  +  +     Y +
Sbjct: 61  ADDKAREDAQAAGKDYERLKLLEVSAIDAERIEKKKKRKDNPDLGFSTYEAQTARQ-YSR 119

Query: 201 RTKNVEV-DLEEYNKMKEADPEFYRDASSLQYGKSPKISEDKIDRMVKELKDREEKRNSF 259
             K +   D+E+Y K K    E +            K +   I++MV +L  + E+R  +
Sbjct: 120 LVKGMPARDMEKYEKQKAELGEAFYGGPHTTLHALTKDTPAAINKMVNDLDQQIERRKKY 179

Query: 260 SRRRRFHEEKDIDSINDRNEHFNKKIERAFGKYTLEIKNNLERGTAL 306
           SRRR ++++ D+D IN+RN  FNKK++R +G++T EIK NLERGTA+
Sbjct: 180 SRRRIYNDDADVDFINERNSKFNKKLDRFYGEHTAEIKQNLERGTAI 226

May be involved in pre-mRNA splicing.

Drosophila pseudoobscura pseudoobscura (taxid: 46245)

>sp|Q612R3|SYF2_CAEBR Pre-mRNA-splicing factor syf-2 OS=Caenorhabditis briggsae GN=syf-2 PE=3 SV=2

 Score = 64.7 bits (156), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 72/208 (34%), Positives = 115/208 (55%), Gaps = 20/208 (9%)

Query: 110 ARKANQTAMVAEKKRMEPP-----QESRGISKQKWLEERKRKIGKLLD---ANGLDMTKA 161
           ARK N   +V E +R + P     ++ R   + K L++RK    K LD      L+M+  
Sbjct: 35  ARKENHAQVVEEDRRKKLPKNFEAKKERDQWQVKELQDRKEAEDKGLDYERVRSLEMS-- 92

Query: 162 FMLDTQEAAEAKYKKWEKDPAPFGWDVFNQKALYDAYKKRTKNVEVDLEEYNKMKE--AD 219
              D  E  E K +K +K+P   G+  +    L   + + T  ++ DLE Y KMKE    
Sbjct: 93  --ADVTEKLEQK-RKRKKNPDQ-GFASYEDMTLR-QHTRLTAALDPDLESYKKMKECVGG 147

Query: 220 PEFYRDASSLQYGKS-PKISEDKIDRMVKELKDREEKRNSFSRRRRFHEEKDIDSINDRN 278
            +FY  A +L +G   P  S   +DR+VK++  + ++R  + RRR +  +  ID IN++N
Sbjct: 148 DQFYPTADTLIHGNHYPTTS--AMDRLVKDVHGQVKRREQYHRRRLYDPDAPIDYINEKN 205

Query: 279 EHFNKKIERAFGKYTLEIKNNLERGTAL 306
           + FNKK+++ +GKYT +IK++LERGTA+
Sbjct: 206 KKFNKKLDKYYGKYTEDIKDDLERGTAI 233

May be involved in pre-mRNA splicing.

Caenorhabditis briggsae (taxid: 6238)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	308
255560553	308	Pre-mRNA-splicing factor syf2, putative	0.990	0.990	0.827	1e-143
449458624	310	PREDICTED: pre-mRNA-splicing factor syf2	0.996	0.990	0.801	1e-140
225428055	313	PREDICTED: pre-mRNA-splicing factor syf2	0.993	0.977	0.8	1e-140
225428053	295	PREDICTED: pre-mRNA-splicing factor syf2	0.948	0.989	0.797	1e-136
147816495	295	hypothetical protein VITISV_007542 [Viti	0.948	0.989	0.797	1e-135
224078363	308	predicted protein [Populus trichocarpa]	0.993	0.993	0.798	1e-129
356574153	411	PREDICTED: pre-mRNA-splicing factor syf2	0.996	0.746	0.771	1e-128
363807600	314	uncharacterized protein LOC100787714 [Gl	0.996	0.977	0.756	1e-126
242094176	353	hypothetical protein SORBIDRAFT_10g02969	0.957	0.835	0.706	1e-120
18398236	298	pre-mRNA-splicing factor SYF2 [Arabidops	0.964	0.996	0.704	1e-119

>gi|255560553|ref|XP_002521291.1| Pre-mRNA-splicing factor syf2, putative [Ricinus communis] gi|223539559|gb|EEF41147.1| Pre-mRNA-splicing factor syf2, putative [Ricinus communis]

 Score =  514 bits (1324), Expect = e-143,   Method: Compositional matrix adjust.
 Identities = 255/308 (82%), Positives = 274/308 (88%), Gaps = 3/308 (0%)

Query: 2   EERRVHPDCINASNPYHECVDYCFRKIAEAKVRMVEDEREAVQASGSSGQSNTLASDVAE 61
           EERRVHPDCINASNPYHECV+YCFRKIAEAKVR  + E E +Q   +SGQS  LAS+  E
Sbjct: 3   EERRVHPDCINASNPYHECVEYCFRKIAEAKVRTGKLEEEILQDKKASGQSTALASEQDE 62

Query: 62  DLHHENPKLEAGSDSDNDK-PAEEDVEGDFTKLTGRQKKLFELRLKMNEARKANQTAMVA 120
             H + P    G DSD+D  PA +D   D TKLTGRQKKLFELRLKMNEARKANQTAMVA
Sbjct: 63  VQHDQRPDF--GEDSDDDSNPAVQDNVEDVTKLTGRQKKLFELRLKMNEARKANQTAMVA 120

Query: 121 EKKRMEPPQESRGISKQKWLEERKRKIGKLLDANGLDMTKAFMLDTQEAAEAKYKKWEKD 180
           EKK+ME PQESRGISKQKWLEERK+KIGKLLDANGLDMTKA+MLDTQEAAE KYKKWEK 
Sbjct: 121 EKKKMEAPQESRGISKQKWLEERKKKIGKLLDANGLDMTKAYMLDTQEAAEVKYKKWEKG 180

Query: 181 PAPFGWDVFNQKALYDAYKKRTKNVEVDLEEYNKMKEADPEFYRDASSLQYGKSPKISED 240
           PAPFGWDVFNQK LY+AYKKRT N+EVDLEEYNKMKE+DPEFYR+ASSLQYGK+PKISE+
Sbjct: 181 PAPFGWDVFNQKTLYNAYKKRTMNIEVDLEEYNKMKESDPEFYREASSLQYGKAPKISEE 240

Query: 241 KIDRMVKELKDREEKRNSFSRRRRFHEEKDIDSINDRNEHFNKKIERAFGKYTLEIKNNL 300
           K+DRMVKELKDREEKRNSFSRRR+F EEKDIDSINDRNEHFNKKIERAFGKYTLEIKNNL
Sbjct: 241 KVDRMVKELKDREEKRNSFSRRRKFREEKDIDSINDRNEHFNKKIERAFGKYTLEIKNNL 300

Query: 301 ERGTALPD 308
           ERGTALPD
Sbjct: 301 ERGTALPD 308

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449458624|ref|XP_004147047.1| PREDICTED: pre-mRNA-splicing factor syf2-like [Cucumis sativus] gi|449489629|ref|XP_004158369.1| PREDICTED: pre-mRNA-splicing factor syf2-like [Cucumis sativus]

 Score =  504 bits (1299), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 247/308 (80%), Positives = 272/308 (88%), Gaps = 1/308 (0%)

Query: 2   EERRVHPDCINASNPYHECVDYCFRKIAEAKVRMVEDEREAVQASGSSGQSNTLASDVAE 61
           +E RVHPDC NASNPYHEC +YCF+ IAE K R  ++E E VQA  SSG S+ +  D  E
Sbjct: 3   DEGRVHPDCRNASNPYHECSEYCFKVIAELKARSQKNEPETVQAGRSSGSSSFVPPDEYE 62

Query: 62  DLHHENPKLEAGSDSDNDK-PAEEDVEGDFTKLTGRQKKLFELRLKMNEARKANQTAMVA 120
           DLH E P  E  SD D DK   EE+VEGDFTKLTGR+KKLFE+RLKMNEARKANQTA+ A
Sbjct: 63  DLHDEKPDEEGHSDGDLDKFSGEENVEGDFTKLTGRKKKLFEIRLKMNEARKANQTAIAA 122

Query: 121 EKKRMEPPQESRGISKQKWLEERKRKIGKLLDANGLDMTKAFMLDTQEAAEAKYKKWEKD 180
           EKK+MEPP ESRGISKQKWLE+RK+KIGKLLDANGLDMTKA+MLDTQEAAE KYKKWEKD
Sbjct: 123 EKKKMEPPSESRGISKQKWLEDRKKKIGKLLDANGLDMTKAYMLDTQEAAENKYKKWEKD 182

Query: 181 PAPFGWDVFNQKALYDAYKKRTKNVEVDLEEYNKMKEADPEFYRDASSLQYGKSPKISED 240
           PAP+GWDVFNQK LY+AYKKRTKNV +DLEEYNKMKE+DPEFYR+ASSLQYGK+PKISED
Sbjct: 183 PAPYGWDVFNQKTLYNAYKKRTKNVNIDLEEYNKMKESDPEFYREASSLQYGKAPKISED 242

Query: 241 KIDRMVKELKDREEKRNSFSRRRRFHEEKDIDSINDRNEHFNKKIERAFGKYTLEIKNNL 300
           KID MVKELKDR+EKR SFSRRR+FHE+KDIDSINDRNEHFNKKIERAFG+YTLEIKNNL
Sbjct: 243 KIDNMVKELKDRDEKRKSFSRRRKFHEDKDIDSINDRNEHFNKKIERAFGRYTLEIKNNL 302

Query: 301 ERGTALPD 308
           ERGTALPD
Sbjct: 303 ERGTALPD 310

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225428055|ref|XP_002279493.1| PREDICTED: pre-mRNA-splicing factor syf2 isoform 1 [Vitis vinifera] gi|297744598|emb|CBI37860.3| unnamed protein product [Vitis vinifera]

 Score =  503 bits (1295), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 248/310 (80%), Positives = 272/310 (87%), Gaps = 4/310 (1%)

Query: 3   ERRVHPDCINASNPYHECVDYCFRKIAEAKVRMVEDEREAVQA-SGSSGQSNTLASDVAE 61
           ERRVHPDCINASNPYHECV+YCFRKIAEAK +M + E E ++A SGS G ++   S V +
Sbjct: 4   ERRVHPDCINASNPYHECVEYCFRKIAEAKAQMDKKESEVMEAGSGSGGGNDQYISGVPD 63

Query: 62  ---DLHHENPKLEAGSDSDNDKPAEEDVEGDFTKLTGRQKKLFELRLKMNEARKANQTAM 118
              + H E    E  SD DND+P EE  E DFT+LTGRQKKLFELRLKMNEARKANQTAM
Sbjct: 64  QDKNTHDEGTDPEERSDDDNDQPVEEIEEVDFTQLTGRQKKLFELRLKMNEARKANQTAM 123

Query: 119 VAEKKRMEPPQESRGISKQKWLEERKRKIGKLLDANGLDMTKAFMLDTQEAAEAKYKKWE 178
           VAEKK+ME P ESRGISKQKW+EERK+KIGKLLD NGLDM KA+MLDTQE AE KYKKWE
Sbjct: 124 VAEKKKMEAPPESRGISKQKWIEERKKKIGKLLDVNGLDMKKAYMLDTQEMAETKYKKWE 183

Query: 179 KDPAPFGWDVFNQKALYDAYKKRTKNVEVDLEEYNKMKEADPEFYRDASSLQYGKSPKIS 238
           KDPAPFGWDVFNQK LY+AYKKRTKN+EVD++EYNKMKEADPEFYR+ASSLQYGK+PK S
Sbjct: 184 KDPAPFGWDVFNQKTLYNAYKKRTKNIEVDIDEYNKMKEADPEFYREASSLQYGKAPKCS 243

Query: 239 EDKIDRMVKELKDREEKRNSFSRRRRFHEEKDIDSINDRNEHFNKKIERAFGKYTLEIKN 298
           EDKID+MVKELKDR+EKR SFSRRR+FHEEKDIDSINDRNEHFNKKIERAFGKYTLEIKN
Sbjct: 244 EDKIDKMVKELKDRDEKRQSFSRRRKFHEEKDIDSINDRNEHFNKKIERAFGKYTLEIKN 303

Query: 299 NLERGTALPD 308
           NLERGTALPD
Sbjct: 304 NLERGTALPD 313

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225428053|ref|XP_002279513.1| PREDICTED: pre-mRNA-splicing factor syf2 isoform 2 [Vitis vinifera]

 Score =  489 bits (1258), Expect = e-136,   Method: Compositional matrix adjust.
 Identities = 244/306 (79%), Positives = 265/306 (86%), Gaps = 14/306 (4%)

Query: 3   ERRVHPDCINASNPYHECVDYCFRKIAEAKVRMVEDEREAVQASGSSGQSNTLASDVAED 62
           ERRVHPDCINASNPYHECV+YCFRKIAEAK +M  D++E    SG   Q         ++
Sbjct: 4   ERRVHPDCINASNPYHECVEYCFRKIAEAKAQM--DKKE----SGVPDQD--------KN 49

Query: 63  LHHENPKLEAGSDSDNDKPAEEDVEGDFTKLTGRQKKLFELRLKMNEARKANQTAMVAEK 122
            H E    E  SD DND+P EE  E DFT+LTGRQKKLFELRLKMNEARKANQTAMVAEK
Sbjct: 50  THDEGTDPEERSDDDNDQPVEEIEEVDFTQLTGRQKKLFELRLKMNEARKANQTAMVAEK 109

Query: 123 KRMEPPQESRGISKQKWLEERKRKIGKLLDANGLDMTKAFMLDTQEAAEAKYKKWEKDPA 182
           K+ME P ESRGISKQKW+EERK+KIGKLLD NGLDM KA+MLDTQE AE KYKKWEKDPA
Sbjct: 110 KKMEAPPESRGISKQKWIEERKKKIGKLLDVNGLDMKKAYMLDTQEMAETKYKKWEKDPA 169

Query: 183 PFGWDVFNQKALYDAYKKRTKNVEVDLEEYNKMKEADPEFYRDASSLQYGKSPKISEDKI 242
           PFGWDVFNQK LY+AYKKRTKN+EVD++EYNKMKEADPEFYR+ASSLQYGK+PK SEDKI
Sbjct: 170 PFGWDVFNQKTLYNAYKKRTKNIEVDIDEYNKMKEADPEFYREASSLQYGKAPKCSEDKI 229

Query: 243 DRMVKELKDREEKRNSFSRRRRFHEEKDIDSINDRNEHFNKKIERAFGKYTLEIKNNLER 302
           D+MVKELKDR+EKR SFSRRR+FHEEKDIDSINDRNEHFNKKIERAFGKYTLEIKNNLER
Sbjct: 230 DKMVKELKDRDEKRQSFSRRRKFHEEKDIDSINDRNEHFNKKIERAFGKYTLEIKNNLER 289

Query: 303 GTALPD 308
           GTALPD
Sbjct: 290 GTALPD 295

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147816495|emb|CAN77350.1| hypothetical protein VITISV_007542 [Vitis vinifera]

 Score =  488 bits (1256), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 244/306 (79%), Positives = 265/306 (86%), Gaps = 14/306 (4%)

Query: 3   ERRVHPDCINASNPYHECVDYCFRKIAEAKVRMVEDEREAVQASGSSGQSNTLASDVAED 62
           ERRVHPDCINASNPYHECV+YCFRKIAEAK +M  D++E    SG   Q         ++
Sbjct: 4   ERRVHPDCINASNPYHECVEYCFRKIAEAKAQM--DKKE----SGVPDQD--------KN 49

Query: 63  LHHENPKLEAGSDSDNDKPAEEDVEGDFTKLTGRQKKLFELRLKMNEARKANQTAMVAEK 122
            H E    E  SD DND+P EE  E DFT+LTGRQKKLFELRLKMNEARKANQTAMVAEK
Sbjct: 50  PHDEGTDPEEQSDDDNDQPVEEIEEVDFTQLTGRQKKLFELRLKMNEARKANQTAMVAEK 109

Query: 123 KRMEPPQESRGISKQKWLEERKRKIGKLLDANGLDMTKAFMLDTQEAAEAKYKKWEKDPA 182
           K+ME P ESRGISKQKW+EERK+KIGKLLD NGLDM KA+MLDTQE AE KYKKWEKDPA
Sbjct: 110 KKMEAPPESRGISKQKWIEERKKKIGKLLDVNGLDMKKAYMLDTQEMAETKYKKWEKDPA 169

Query: 183 PFGWDVFNQKALYDAYKKRTKNVEVDLEEYNKMKEADPEFYRDASSLQYGKSPKISEDKI 242
           PFGWDVFNQK LY+AYKKRTKN+EVD++EYNKMKEADPEFYR+ASSLQYGK+PK SEDKI
Sbjct: 170 PFGWDVFNQKTLYNAYKKRTKNIEVDIDEYNKMKEADPEFYREASSLQYGKAPKCSEDKI 229

Query: 243 DRMVKELKDREEKRNSFSRRRRFHEEKDIDSINDRNEHFNKKIERAFGKYTLEIKNNLER 302
           D+MVKELKDR+EKR SFSRRR+FHEEKDIDSINDRNEHFNKKIERAFGKYTLEIKNNLER
Sbjct: 230 DKMVKELKDRDEKRQSFSRRRKFHEEKDIDSINDRNEHFNKKIERAFGKYTLEIKNNLER 289

Query: 303 GTALPD 308
           GTALPD
Sbjct: 290 GTALPD 295

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224078363|ref|XP_002305528.1| predicted protein [Populus trichocarpa] gi|222848492|gb|EEE86039.1| predicted protein [Populus trichocarpa]

 Score =  468 bits (1204), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 245/307 (79%), Positives = 271/307 (88%), Gaps = 1/307 (0%)

Query: 2   EERRVHPDCINASNPYHECVDYCFRKIAEAKVRMVEDEREAVQASGSSGQSNTLASDVAE 61
           +ERRVHPDCINASNPYHECV+YCF KIAEAK R    E E VQA G  G S++ A +  E
Sbjct: 3   DERRVHPDCINASNPYHECVEYCFIKIAEAKARAEIKETEVVQAKGGIGWSSSQAPEQGE 62

Query: 62  DLHHENPKLEAGSDSDNDKPAEEDVEGDFTKLTGRQKKLFELRLKMNEARKANQTAMVAE 121
           +L  E P  E  S+ D+D+   ++VEGD T+LTGR+KKLFELRLKMNEARKANQTAMV+E
Sbjct: 63  ELDEERPDHEH-SEDDDDRAVLDNVEGDVTQLTGRKKKLFELRLKMNEARKANQTAMVSE 121

Query: 122 KKRMEPPQESRGISKQKWLEERKRKIGKLLDANGLDMTKAFMLDTQEAAEAKYKKWEKDP 181
           KK+ME P ESRGISKQKWLE+RK+KIGKLLDANGLDMTKA+MLDTQEAAE KYKKWEKDP
Sbjct: 122 KKKMEAPSESRGISKQKWLEDRKKKIGKLLDANGLDMTKAYMLDTQEAAEVKYKKWEKDP 181

Query: 182 APFGWDVFNQKALYDAYKKRTKNVEVDLEEYNKMKEADPEFYRDASSLQYGKSPKISEDK 241
           APFGWDVFNQK LY+AYKKRTKNV+VDLEEYNKMKEADPEFYR+ASSLQYGK+PK SE+K
Sbjct: 182 APFGWDVFNQKTLYNAYKKRTKNVDVDLEEYNKMKEADPEFYREASSLQYGKAPKTSEEK 241

Query: 242 IDRMVKELKDREEKRNSFSRRRRFHEEKDIDSINDRNEHFNKKIERAFGKYTLEIKNNLE 301
           I+RMVKELKDR+E R SFSRRRRF +EKDIDSINDRNEHFNKKIERAFGKYTLEIKNNLE
Sbjct: 242 IERMVKELKDRDENRKSFSRRRRFRDEKDIDSINDRNEHFNKKIERAFGKYTLEIKNNLE 301

Query: 302 RGTALPD 308
           RGTALPD
Sbjct: 302 RGTALPD 308

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356574153|ref|XP_003555216.1| PREDICTED: pre-mRNA-splicing factor syf2-like [Glycine max]

 Score =  462 bits (1189), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 240/311 (77%), Positives = 266/311 (85%), Gaps = 4/311 (1%)

Query: 2   EERRVHPDCINASNPYHECVDYCFRKIAEAKVRMVEDEREAVQASGSSGQSNTLA--SDV 59
           +ER VHPDC NASNPYHEC DYCFR IAEAK+R  + E E  QASG +     +   S V
Sbjct: 101 DERAVHPDCRNASNPYHECSDYCFRVIAEAKIRSQQQESEVGQASGGNNSKQAIPDESYV 160

Query: 60  AEDLHHENPKLEAGSDSDNDKPA--EEDVEGDFTKLTGRQKKLFELRLKMNEARKANQTA 117
            +++H+  P LE  SDSD D+PA  E + E D+TKL+ RQKK  ELR KM EA+K NQ  
Sbjct: 161 EKEIHNGRPDLEENSDSDPDQPAVQEAEQEVDYTKLSARQKKWMELRSKMQEAKKRNQIE 220

Query: 118 MVAEKKRMEPPQESRGISKQKWLEERKRKIGKLLDANGLDMTKAFMLDTQEAAEAKYKKW 177
           + AEKKRME P ESRG+SKQKWLE+RK+KIGKLLDANGLDMTKA+MLDTQEAAE KYKKW
Sbjct: 221 IAAEKKRMEAPTESRGVSKQKWLEDRKKKIGKLLDANGLDMTKAYMLDTQEAAEEKYKKW 280

Query: 178 EKDPAPFGWDVFNQKALYDAYKKRTKNVEVDLEEYNKMKEADPEFYRDASSLQYGKSPKI 237
           EKDPAPFGWDVFNQK LY+AYKKRTKNVEVD+EEYN+MKEADPEFYRDASSLQYGK+PKI
Sbjct: 281 EKDPAPFGWDVFNQKTLYNAYKKRTKNVEVDVEEYNRMKEADPEFYRDASSLQYGKAPKI 340

Query: 238 SEDKIDRMVKELKDREEKRNSFSRRRRFHEEKDIDSINDRNEHFNKKIERAFGKYTLEIK 297
           SE+KIDRMV+ELKDR+EKRNSFSRRRRFHEEKDIDSINDRNEHFNKKIERAFGKYTLEIK
Sbjct: 341 SEEKIDRMVRELKDRDEKRNSFSRRRRFHEEKDIDSINDRNEHFNKKIERAFGKYTLEIK 400

Query: 298 NNLERGTALPD 308
           NNLERGTALPD
Sbjct: 401 NNLERGTALPD 411

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|363807600|ref|NP_001241898.1| uncharacterized protein LOC100787714 [Glycine max] gi|255636854|gb|ACU18760.1| unknown [Glycine max]

 Score =  456 bits (1172), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 236/312 (75%), Positives = 264/312 (84%), Gaps = 5/312 (1%)

Query: 2   EERRVHPDCINASNPYHECVDYCFRKIAEAKVRMVEDEREAVQASGSSGQSNTLA--SDV 59
           +ER VHPDC NASNPYHEC DYCFR IAEAK+R  + E E  QASG S     +   S +
Sbjct: 3   DERAVHPDCRNASNPYHECSDYCFRVIAEAKIRSQQQESEVGQASGGSNSKQAIPDESYL 62

Query: 60  AEDLHHENPKLEAGSDSDNDKPAEEDVEG---DFTKLTGRQKKLFELRLKMNEARKANQT 116
            E++H + P LE  SDSD D+PA ++ E    D+TKL+ RQKK  ELR KM EA+K NQ 
Sbjct: 63  GEEIHDDRPDLEENSDSDPDQPALQEAEQEEVDYTKLSARQKKWMELRAKMQEAKKRNQI 122

Query: 117 AMVAEKKRMEPPQESRGISKQKWLEERKRKIGKLLDANGLDMTKAFMLDTQEAAEAKYKK 176
            + AEKKRME P ESRG+SKQKWLE+RK+KIGKLLDANGLDMTKA+MLDTQEAAE KYKK
Sbjct: 123 EIAAEKKRMEAPTESRGVSKQKWLEDRKKKIGKLLDANGLDMTKAYMLDTQEAAEEKYKK 182

Query: 177 WEKDPAPFGWDVFNQKALYDAYKKRTKNVEVDLEEYNKMKEADPEFYRDASSLQYGKSPK 236
           WEKDPAPFGWDVFNQK LY+AYKKRTKNVEVD+EEYN+MKEAD EFYRDAS LQYGK+PK
Sbjct: 183 WEKDPAPFGWDVFNQKTLYNAYKKRTKNVEVDVEEYNRMKEADSEFYRDASCLQYGKAPK 242

Query: 237 ISEDKIDRMVKELKDREEKRNSFSRRRRFHEEKDIDSINDRNEHFNKKIERAFGKYTLEI 296
           ISE+KID+MV+ELK+R+EKRNSFSRRRRFHEEKDIDSINDRNEHFNKKIERAFGKYTLEI
Sbjct: 243 ISEEKIDKMVQELKNRDEKRNSFSRRRRFHEEKDIDSINDRNEHFNKKIERAFGKYTLEI 302

Query: 297 KNNLERGTALPD 308
           KNNLERGTALPD
Sbjct: 303 KNNLERGTALPD 314

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|242094176|ref|XP_002437578.1| hypothetical protein SORBIDRAFT_10g029690 [Sorghum bicolor] gi|241915801|gb|EER88945.1| hypothetical protein SORBIDRAFT_10g029690 [Sorghum bicolor]

 Score =  436 bits (1121), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 217/307 (70%), Positives = 249/307 (81%), Gaps = 12/307 (3%)

Query: 2   EERRVHPDCINASNPYHECVDYCFRKIAEAKVRMVEDEREAVQASGSSGQSNTLASDVAE 61
           E+R VHPDCINASNPYHEC DYCFR+IA+AK  +   E +      ++  +    SD AE
Sbjct: 59  EQRTVHPDCINASNPYHECSDYCFRRIADAKSGLERGEGQPPADVATAAGT----SDAAE 114

Query: 62  DLHHENPKLEAGSDSDNDKPAEEDVEGDFTKLTGRQKKLFELRLKMNEARKANQTAMVAE 121
               E        D+D DK      +  + ++T +QKKLFELRLKMNEARKANQ AMVAE
Sbjct: 115 QQRPE--------DNDADKQEGAGADDGYLQMTEKQKKLFELRLKMNEARKANQQAMVAE 166

Query: 122 KKRMEPPQESRGISKQKWLEERKRKIGKLLDANGLDMTKAFMLDTQEAAEAKYKKWEKDP 181
           KKRMEP  ESRG+SKQKWL++RK+KIGKLLD+NGLDM+KA+MLDTQE AE KYKKWEK+P
Sbjct: 167 KKRMEPRGESRGVSKQKWLDDRKKKIGKLLDSNGLDMSKAYMLDTQETAETKYKKWEKEP 226

Query: 182 APFGWDVFNQKALYDAYKKRTKNVEVDLEEYNKMKEADPEFYRDASSLQYGKSPKISEDK 241
           AP+GWDVFNQK LYDAYKKRTKN+EVD+E YNK KEADPEFYRDASSLQYGK   + E+ 
Sbjct: 227 APYGWDVFNQKTLYDAYKKRTKNIEVDMEAYNKAKEADPEFYRDASSLQYGKVSNVPEEN 286

Query: 242 IDRMVKELKDREEKRNSFSRRRRFHEEKDIDSINDRNEHFNKKIERAFGKYTLEIKNNLE 301
           ID+MVKELK+REEKR SFSRRR+F+E+KDIDSINDRNEHFNKKIERAFGKYTLEIKNNLE
Sbjct: 287 IDKMVKELKEREEKRKSFSRRRKFNEDKDIDSINDRNEHFNKKIERAFGKYTLEIKNNLE 346

Query: 302 RGTALPD 308
           RGTALPD
Sbjct: 347 RGTALPD 353

Source: Sorghum bicolor

Species: Sorghum bicolor

Genus: Sorghum

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|18398236|ref|NP_565396.1| pre-mRNA-splicing factor SYF2 [Arabidopsis thaliana] gi|20197279|gb|AAC64217.2| Expressed protein [Arabidopsis thaliana] gi|20197459|gb|AAM15083.1| Expressed protein [Arabidopsis thaliana] gi|20466270|gb|AAM20452.1| unknown protein [Arabidopsis thaliana] gi|22136328|gb|AAM91242.1| unknown protein [Arabidopsis thaliana] gi|330251450|gb|AEC06544.1| pre-mRNA-splicing factor SYF2 [Arabidopsis thaliana]

 Score =  435 bits (1118), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 217/308 (70%), Positives = 252/308 (81%), Gaps = 11/308 (3%)

Query: 1   MEERRVHPDCINASNPYHECVDYCFRKIAEAKVRMVEDEREAVQASGSSGQSNTLASDVA 60
           + ERRVHPDCINASNPYHECV+YCF+KIAEAK R  +      Q +G +         + 
Sbjct: 2   VSERRVHPDCINASNPYHECVEYCFKKIAEAKARFEK------QNTGLAKVHEQTREPLD 55

Query: 61  EDLHHENPKLEAGSDSDNDKPAEEDVEGDFTKLTGRQKKLFELRLKMNEARKANQTAMVA 120
           +    E+   E   + DN +P     + D T+LTGRQKKLFELRLKMNEARK+NQT + +
Sbjct: 56  DKRIEEDSSEEEEEEEDNQEP-----QVDVTQLTGRQKKLFELRLKMNEARKSNQTDVGS 110

Query: 121 EKKRMEPPQESRGISKQKWLEERKRKIGKLLDANGLDMTKAFMLDTQEAAEAKYKKWEKD 180
           EKK+ME P E++GISKQKWLE RK+KIGKLLDANGLDMT+A+MLDTQEAAE+KYKKWEK+
Sbjct: 111 EKKKMEAPTETKGISKQKWLEGRKKKIGKLLDANGLDMTQAYMLDTQEAAESKYKKWEKE 170

Query: 181 PAPFGWDVFNQKALYDAYKKRTKNVEVDLEEYNKMKEADPEFYRDASSLQYGKSPKISED 240
           P P GWDVFNQK LY+AYKKRTKN++VDLEEYN+M+ ADPEFYR+ASSLQYGK+PK S+D
Sbjct: 171 PTPAGWDVFNQKTLYNAYKKRTKNIQVDLEEYNRMRAADPEFYREASSLQYGKAPKTSQD 230

Query: 241 KIDRMVKELKDREEKRNSFSRRRRFHEEKDIDSINDRNEHFNKKIERAFGKYTLEIKNNL 300
           KID+M KEL DRE+KR  FSRRR+F EEKDIDSINDRNEHFNKKIERAFGKYTLEIKNNL
Sbjct: 231 KIDKMAKELLDREQKRQEFSRRRKFREEKDIDSINDRNEHFNKKIERAFGKYTLEIKNNL 290

Query: 301 ERGTALPD 308
           ERGTALPD
Sbjct: 291 ERGTALPD 298

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	308
TAIR|locus:2039395	298	AT2G16860 "AT2G16860" [Arabido	0.964	0.996	0.672	5.7e-107
UNIPROTKB|F1P0B5	235	SYF2 "Uncharacterized protein"	0.737	0.965	0.373	1.1e-30
UNIPROTKB|I3LK70	249	SYF2 "Uncharacterized protein"	0.743	0.919	0.368	1.4e-30
MGI|MGI:1915842	242	Syf2 "SYF2 homolog, RNA splici	0.733	0.933	0.376	1.4e-30
RGD|621592	242	Syf2 "SYF2 homolog, RNA splici	0.733	0.933	0.376	1.4e-30
UNIPROTKB|F1N607	235	SYF2 "Uncharacterized protein"	0.740	0.970	0.372	2.3e-30
UNIPROTKB|O95926	243	SYF2 "Pre-mRNA-splicing factor	0.668	0.847	0.384	2.7e-29
ZFIN|ZDB-GENE-040801-170	238	syf2 "SYF2 homolog, RNA splici	0.668	0.865	0.361	4.4e-29
DICTYBASE|DDB_G0284573	293	syf2 "putative pre-mRNA-splici	0.737	0.774	0.311	1.8e-23
FB|FBgn0033556	226	CG12343 [Drosophila melanogast	0.681	0.929	0.306	1e-22

TAIR|locus:2039395 AT2G16860 "AT2G16860" [Arabidopsis thaliana (taxid:3702)]

 Score = 1058 (377.5 bits), Expect = 5.7e-107, P = 5.7e-107
 Identities = 207/308 (67%), Positives = 241/308 (78%)

Query:     1 MEERRVHPDCINASNPYHECVDYCFRKIAEAKVRMVEDEREAVQASGSSGQSNTLASDVA 60
             + ERRVHPDCINASNPYHECV+YCF+KIAEAK R    E+   Q +G +         + 
Sbjct:     2 VSERRVHPDCINASNPYHECVEYCFKKIAEAKARF---EK---QNTGLAKVHEQTREPLD 55

Query:    61 EDLHHENPKLEAGSDSDNDKPAEEDVEGDFTKLTGRQKKLFELRLKMNEARKANQTAMVA 120
             +    E+   E   + DN +P     + D T+LTGRQKKLFELRLKMNEARK+NQT + +
Sbjct:    56 DKRIEEDSSEEEEEEEDNQEP-----QVDVTQLTGRQKKLFELRLKMNEARKSNQTDVGS 110

Query:   121 EKKRMEPPQESRGISKQKWLEERKRKIGKLLDANGLDMTKAFMLDTQXXXXXXXXXXXXD 180
             EKK+ME P E++GISKQKWLE RK+KIGKLLDANGLDMT+A+MLDTQ            +
Sbjct:   111 EKKKMEAPTETKGISKQKWLEGRKKKIGKLLDANGLDMTQAYMLDTQEAAESKYKKWEKE 170

Query:   181 PAPFGWDVFNQKALYDAYKKRTKNVEVDLEEYNKMKEADPEFYRDASSLQYGKSPKISED 240
             P P GWDVFNQK LY+AYKKRTKN++VDLEEYN+M+ ADPEFYR+ASSLQYGK+PK S+D
Sbjct:   171 PTPAGWDVFNQKTLYNAYKKRTKNIQVDLEEYNRMRAADPEFYREASSLQYGKAPKTSQD 230

Query:   241 KIDRMVKELKDREEKRNSFSRRRRFHEEKDIDSINDRNEHFNKKIERAFGKYTLEIKNNL 300
             KID+M KEL DRE+KR  FSRRR+F EEKDIDSINDRNEHFNKKIERAFGKYTLEIKNNL
Sbjct:   231 KIDKMAKELLDREQKRQEFSRRRKFREEKDIDSINDRNEHFNKKIERAFGKYTLEIKNNL 290

Query:   301 ERGTALPD 308
             ERGTALPD
Sbjct:   291 ERGTALPD 298

GO:0003674 "molecular_function" evidence=ND

GO:0005737 "cytoplasm" evidence=ISM

GO:0008150 "biological_process" evidence=ND

UNIPROTKB|F1P0B5 SYF2 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 338 (124.0 bits), Expect = 1.1e-30, P = 1.1e-30
 Identities = 90/241 (37%), Positives = 131/241 (54%)

Query:    72 AGSDSDNDKPAEEDVEGDFTKLTGRQKKLFELRLKMNEARKANQTAMVAEKKRME-PPQE 130
             +GS+ D  +P+  +V     K   R +K  EL LK NEARK N   +V E KR++ PP  
Sbjct:     3 SGSE-DEAQPSAAEVAAA-QKREERLRKFRELHLKRNEARKLNHQEVVEEDKRLKLPPNW 60

Query:   131 SRGISKQKW---LEERKRKIGKLLDANGLDMTKAFMLDTQXXXXXXXXXXXXDPAP-FGW 186
                 ++ +W   +EE+K++      A G D  +  +L+                 P  G+
Sbjct:    61 EAKKARLEWELKVEEKKKECA----ARGEDYERVKLLEISAEDAERWERKKKRKNPDLGF 116

Query:   187 DVFNQKALYDAYKKRTKNVEVDLEEYNKMKEADPE-FYRDASSLQYGKSPKISEDKIDRM 245
               +    L   Y++ T+ ++ DLE+Y K+KE   E  Y  + SL +G      E  IDRM
Sbjct:   117 SDYAAAQLRQ-YQRLTRQIKPDLEQYEKLKEQYGEALYPTSDSLLHGTHVPDKEG-IDRM 174

Query:   246 VKELKDREEKRNSFSRRRRFHEEKDIDSINDRNEHFNKKIERAFGKYTLEIKNNLERGTA 305
             V +L+ + EKR  +SRRR ++++ DID IN+RN  FNKK ER +GKYT EIK NLERGTA
Sbjct:   175 VADLEKQIEKREKYSRRRPYNDDADIDYINERNAKFNKKAERFYGKYTAEIKQNLERGTA 234

Query:   306 L 306
             +
Sbjct:   235 V 235

GO:0071013 "catalytic step 2 spliceosome" evidence=IEA

UNIPROTKB|I3LK70 SYF2 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 337 (123.7 bits), Expect = 1.4e-30, P = 1.4e-30
 Identities = 88/239 (36%), Positives = 133/239 (55%)

Query:    73 GSDSDNDKPAEEDVEGDFTKLTGRQKKLFELRLKMNEARKANQTAMVAEKKRMEPPQ--E 130
             G+ ++  +P     E    K   R +K  EL LK NEARK N   +V E KR++ P   E
Sbjct:    16 GNGAEEQQPPLGPEELAAQKREQRLRKFRELHLKRNEARKLNHQEVVEEDKRLKLPANWE 75

Query:   131 SRGISKQKW-LEERKRKIGKLLDANGLDMTKAFMLDTQXXXXXXXXXXXXDPAP-FGWDV 188
             ++  ++ +W L+E ++K  K   A G D  K  +L+                 P  G+  
Sbjct:    76 AKK-ARLEWELQEEEKK--KECAARGEDYEKVKLLEISAEDAERWERKKRRKNPDLGFSD 132

Query:   189 FNQKALYDAYKKRTKNVEVDLEEYNKMKEAD-PEFYRDASSLQYGKSPKISEDKIDRMVK 247
             +    L   Y + TK ++ D+E Y +++E    EF+  ++SL +G     +E+ IDRMV 
Sbjct:   133 YAAAQLRQ-YHRLTKQIKPDMETYERLREKHGEEFFPTSNSLLHGTHVPSTEE-IDRMVV 190

Query:   248 ELKDREEKRNSFSRRRRFHEEKDIDSINDRNEHFNKKIERAFGKYTLEIKNNLERGTAL 306
             +L+ + EKR+ +SRRR ++++ DID IN+RN  FNKK ER +GKYT EIK NLERGTA+
Sbjct:   191 DLEKQIEKRDKYSRRRPYNDDADIDYINERNAKFNKKAERFYGKYTAEIKQNLERGTAV 249

GO:0071013 "catalytic step 2 spliceosome" evidence=IEA

MGI|MGI:1915842 Syf2 "SYF2 homolog, RNA splicing factor (S. cerevisiae)" [Mus musculus (taxid:10090)]

 Score = 337 (123.7 bits), Expect = 1.4e-30, P = 1.4e-30
 Identities = 90/239 (37%), Positives = 133/239 (55%)

Query:    74 SDSDNDKP-AEEDVEGDFTKLTGRQKKLFELRLKMNEARKANQTAMVAEKKRMEPPQ--E 130
             +D    +P A E++     K   R +K  EL LK NEARK N   +V E KR++ P   E
Sbjct:    11 ADGAEARPLAAEELAAQ--KREQRLRKFRELHLKRNEARKLNHQEVVEEDKRLKLPANWE 68

Query:   131 SRGISKQKW-LEERKRKIGKLLDANGLDMTKAFMLDTQXXXXXXXXXXXXDPAP-FGWDV 188
             ++  ++ +W L+E ++K  K   A G D  K  +L+                 P  G+  
Sbjct:    69 AKK-ARLEWELQEEEKK--KECAARGEDYEKVKLLEISAEDAERWERRKKKKNPDLGFSD 125

Query:   189 FNQKALYDAYKKRTKNVEVDLEEYNKMKEADPE-FYRDASSLQYGKSPKISEDKIDRMVK 247
             +    L   Y + TK ++ D+E Y + +E   E F+  ++SL +G     SE+ IDRMV 
Sbjct:   126 YAAAQLRQ-YHRLTKQIKPDMESYERQREKHGEDFFPTSNSLLHGTHVPSSEE-IDRMVL 183

Query:   248 ELKDREEKRNSFSRRRRFHEEKDIDSINDRNEHFNKKIERAFGKYTLEIKNNLERGTAL 306
             +L+ + EKR+ +SRRR ++++ DID IN+RN  FNKK ER +GKYT EIK NLERGTA+
Sbjct:   184 DLEKQIEKRDKYSRRRPYNDDADIDYINERNAKFNKKAERFYGKYTAEIKQNLERGTAV 242

GO:0000075 "cell cycle checkpoint" evidence=IMP

GO:0001701 "in utero embryonic development" evidence=IMP

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=IDA

GO:0005681 "spliceosomal complex" evidence=IEA

GO:0006397 "mRNA processing" evidence=IEA

GO:0007369 "gastrulation" evidence=IMP

GO:0008380 "RNA splicing" evidence=IEA

GO:0048568 "embryonic organ development" evidence=IMP

GO:0071013 "catalytic step 2 spliceosome" evidence=ISO

RGD|621592 Syf2 "SYF2 homolog, RNA splicing factor (S. cerevisiae)" [Rattus norvegicus (taxid:10116)]

 Score = 337 (123.7 bits), Expect = 1.4e-30, P = 1.4e-30
 Identities = 90/239 (37%), Positives = 133/239 (55%)

Query:    74 SDSDNDKP-AEEDVEGDFTKLTGRQKKLFELRLKMNEARKANQTAMVAEKKRMEPPQ--E 130
             +D    +P A E++     K   R +K  EL LK NEARK N   +V E KR++ P   E
Sbjct:    11 ADGAEARPLAAEELAAQ--KREQRLRKFRELHLKRNEARKLNHQEVVEEDKRLKLPANWE 68

Query:   131 SRGISKQKW-LEERKRKIGKLLDANGLDMTKAFMLDTQXXXXXXXXXXXXDPAP-FGWDV 188
             ++  ++ +W L+E ++K  K   A G D  K  +L+                 P  G+  
Sbjct:    69 AKK-ARLEWELQEEEKK--KECAARGEDYEKVKLLEISAEDAERWERRKKKKNPDLGFSD 125

Query:   189 FNQKALYDAYKKRTKNVEVDLEEYNKMKEADPE-FYRDASSLQYGKSPKISEDKIDRMVK 247
             +    L   Y + TK ++ D+E Y + +E   E F+  ++SL +G     SE+ IDRMV 
Sbjct:   126 YAAAQLRQ-YHRLTKQIKPDMESYERQREKHGEDFFPTSNSLLHGTHVPSSEE-IDRMVL 183

Query:   248 ELKDREEKRNSFSRRRRFHEEKDIDSINDRNEHFNKKIERAFGKYTLEIKNNLERGTAL 306
             +L+ + EKR+ +SRRR ++++ DID IN+RN  FNKK ER +GKYT EIK NLERGTA+
Sbjct:   184 DLEKQIEKRDKYSRRRPYNDDADIDYINERNAKFNKKAERFYGKYTAEIKQNLERGTAV 242

GO:0000075 "cell cycle checkpoint" evidence=ISO

GO:0001701 "in utero embryonic development" evidence=ISO

GO:0005634 "nucleus" evidence=ISO

GO:0006397 "mRNA processing" evidence=IEA

GO:0007369 "gastrulation" evidence=ISO

GO:0008380 "RNA splicing" evidence=IEA

GO:0048568 "embryonic organ development" evidence=ISO

GO:0071013 "catalytic step 2 spliceosome" evidence=IEA;ISO

UNIPROTKB|F1N607 SYF2 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 335 (123.0 bits), Expect = 2.3e-30, P = 2.3e-30
 Identities = 89/239 (37%), Positives = 132/239 (55%)

Query:    73 GSDSDNDKPAEEDVEGDFTKLTGRQKKLFELRLKMNEARKANQTAMVAEKKRMEPPQ--E 130
             G   +   PA  + E    K   R +K  EL LK NEARK N   +V E KR++ P   E
Sbjct:     3 GGAEEQQPPAGAE-ELASQKREQRLRKFRELHLKRNEARKLNHQEVVEEDKRLKLPANWE 61

Query:   131 SRGISKQKW-LEERKRKIGKLLDANGLDMTKAFMLDTQXXXXXXXXXXXXDPAP-FGWDV 188
             ++  ++ +W L+E ++K  K   A G D  K  +L+                 P  G+  
Sbjct:    62 AKK-ARLEWELQEEEKK--KECAARGEDYEKVKLLEISAEDAERWERKKRRKNPDLGFSD 118

Query:   189 FNQKALYDAYKKRTKNVEVDLEEYNKMKEAD-PEFYRDASSLQYGKSPKISEDKIDRMVK 247
             +    L   Y + TK ++ D+E Y +++E    EF+  ++SL +G     +E+ IDRMV 
Sbjct:   119 YAAAQLRQ-YHRLTKQIKPDMETYERLREKHGEEFFPTSNSLLHGTHVPSTEE-IDRMVL 176

Query:   248 ELKDREEKRNSFSRRRRFHEEKDIDSINDRNEHFNKKIERAFGKYTLEIKNNLERGTAL 306
             +L+ + EKR+ +SRRR ++++ DID IN+RN  FNKK ER +GKYT EIK NLERGTA+
Sbjct:   177 DLEKQIEKRDKYSRRRPYNDDADIDYINERNAKFNKKAERFYGKYTAEIKQNLERGTAV 235

GO:0071013 "catalytic step 2 spliceosome" evidence=IEA

UNIPROTKB|O95926 SYF2 "Pre-mRNA-splicing factor SYF2" [Homo sapiens (taxid:9606)]

 Score = 325 (119.5 bits), Expect = 2.7e-29, P = 2.7e-29
 Identities = 83/216 (38%), Positives = 124/216 (57%)

Query:    96 RQKKLFELRLKMNEARKANQTAMVAEKKRMEPPQ--ESRGISKQKW-LEERKRKIGKLLD 152
             R +K  EL L  NEARK N   +V E KR++ P   E++  ++ +W L+E ++K  K   
Sbjct:    33 RLRKFRELHLMRNEARKLNHQEVVEEDKRLKLPANWEAKK-ARLEWELKEEEKK--KECA 89

Query:   153 ANGLDMTKAFMLDTQXXXXXXXXXXXXDPAP-FGWDVFNQKALYDAYKKRTKNVEVDLEE 211
             A G D  K  +L+                 P  G+  +    L   Y + TK ++ D+E 
Sbjct:    90 ARGEDYEKVKLLEISAEDAERWERKKKRKNPDLGFSDYAAAQLRQ-YHRLTKQIKPDMET 148

Query:   212 YNKMKEAD-PEFYRDASSLQYGKSPKISEDKIDRMVKELKDREEKRNSFSRRRRFHEEKD 270
             Y +++E    EF+  ++SL +G     +E+ IDRMV +L+ + EKR+ +SRRR ++++ D
Sbjct:   149 YERLREKHGEEFFPTSNSLLHGTHVPSTEE-IDRMVIDLEKQIEKRDKYSRRRPYNDDAD 207

Query:   271 IDSINDRNEHFNKKIERAFGKYTLEIKNNLERGTAL 306
             ID IN+RN  FNKK ER +GKYT EIK NLERGTA+
Sbjct:   208 IDYINERNAKFNKKAERFYGKYTAEIKQNLERGTAV 243

GO:0005634 "nucleus" evidence=IDA;NAS

GO:0071013 "catalytic step 2 spliceosome" evidence=IDA

GO:0000398 "mRNA splicing, via spliceosome" evidence=IC

ZFIN|ZDB-GENE-040801-170 syf2 "SYF2 homolog, RNA splicing factor (S. cerevisiae)" [Danio rerio (taxid:7955)]

 Score = 323 (118.8 bits), Expect = 4.4e-29, P = 4.4e-29
 Identities = 78/216 (36%), Positives = 122/216 (56%)

Query:    96 RQKKLFELRLKMNEARKANQTAMVAEKKRMEPPQ--ESRG--ISKQKWLEERKRKIGKLL 151
             R +K  EL  K NEARK N   +V E KR++ P   E++   +  +  ++++K++  +  
Sbjct:    28 RLRKFRELHFKRNEARKLNHQEVVEEDKRLKLPSNWEAKKARLEYELLVDQKKKECAER- 86

Query:   152 DANGLDMTKAFMLDTQXXXXXXXXXXXXDPAPFGWDVFNQKALYDAYKKRTKNVEVDLEE 211
                  D  K   +  +            +P P G+  + +  L   Y++ TK ++ D+E 
Sbjct:    87 -GEDYDRVKLLEISAEDAERWERKKKKRNPDP-GFSGYAEAQLRQ-YQRLTKQIKPDMEN 143

Query:   212 YNKMKE-ADPEFYRDASSLQYGKSPKISEDKIDRMVKELKDREEKRNSFSRRRRFHEEKD 270
             Y K KE    +F+  ++SL YG     S+D I+RMV +++ + EKR  +SRRR ++++ D
Sbjct:   144 YEKQKEECGEDFHPTSNSLIYGTHVP-SKDSINRMVDDVEKQIEKRAKYSRRRAYNDDAD 202

Query:   271 IDSINDRNEHFNKKIERAFGKYTLEIKNNLERGTAL 306
             ID IN+RN  FNKK ER +GKYT EIK NLERGTA+
Sbjct:   203 IDYINERNAKFNKKAERFYGKYTAEIKQNLERGTAV 238

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=IEA

GO:0006397 "mRNA processing" evidence=IEA

GO:0008380 "RNA splicing" evidence=IEA

DICTYBASE|DDB_G0284573 syf2 "putative pre-mRNA-splicing factor" [Dictyostelium discoideum (taxid:44689)]

 Score = 270 (100.1 bits), Expect = 1.8e-23, P = 1.8e-23
 Identities = 75/241 (31%), Positives = 124/241 (51%)

Query:    75 DSDNDKPAEEDVEGDFTKLTGRQKKLFELRLKMNEARKANQTAMVAEKKRMEPPQESRGI 134
             +S+ND   ++        LT  Q+K++ELR K+   +     ++V E KR+    +    
Sbjct:    58 ESEND---DKHFIDPLANLTPAQRKVYELRKKLETTKSVIYKSVVDEHKRIHQGAQDEIE 114

Query:   135 SKQKWLEERKRKIGKLLDANGLDMTKAFMLDTQXXXXXXXXXXXXDPAPFGWD---VFNQ 191
              K++  +E+ ++  + +   GLD  K   L  Q                   D    ++ 
Sbjct:   115 EKKRLYKEKIKQEEEEMKKQGLDPQKE-RLKNQIAEEIKPNKKEKKKDSIVKDKSNTYSD 173

Query:   192 KALYDAYKKRTKNVEV--DLEEYNKM-KEADPEFYRDA---SSLQYGKSPKISEDKIDRM 245
             + +Y++YKKR K +E   + E + K+    D +   D+   +  +YGKS +I  D I+ M
Sbjct:   174 EHVYNSYKKRVKEMEKFHNSEHFKKVVSNEDVKESGDSINNNKYEYGKSIEIPRDNINAM 233

Query:   246 VKELKDREEKRNSFSRRRRFHEEKDIDSINDRNEHFNKKIERAFGKYTLEIKNNLERGTA 305
              +EL   +E R SF +R+ F EE+DI+ IN+ N  FN+K+ RA+ KYT+E + NLERGTA
Sbjct:   234 KQELLKNQENRRSF-KRKSFKEEEDINYINEENRLFNQKVSRAYDKYTVETRQNLERGTA 292

Query:   306 L 306
             L
Sbjct:   293 L 293

GO:0008150 "biological_process" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0003674 "molecular_function" evidence=ND

FB|FBgn0033556 CG12343 [Drosophila melanogaster (taxid:7227)]

 Score = 263 (97.6 bits), Expect = 1.0e-22, P = 1.0e-22
 Identities = 68/222 (30%), Positives = 116/222 (52%)

Query:    92 KLTGRQKKLFELRLKMNEARKANQTAMVAEKKRMEPPQESRGISKQ-KWL--EERKRKIG 148
             KL  R+ +L +L  K  EAR  N   +VAE  R + P+      +Q +W+  +++ R   
Sbjct:    10 KLAERKARLLDLHKKRQEARTDNHQEVVAEDARKKLPKNWEARKRQAEWILADDKARAEA 69

Query:   149 KLLDANGLDMTKAFMLDTQXXXXXXXXXXXX--DPAPFGWDVFNQKALYDAYKKRTKNVE 206
             +   A G D  +  +L+                D    G+  +  +     Y +  K++ 
Sbjct:    70 Q---AAGKDYERLKLLEVSAVDADRIEKKKKRKDNPDLGFSTYEAQTARQ-YNRLVKSMP 125

Query:   207 V-DLEEYNKMKEA-DPEFYRDASSLQYGKSPKISEDKIDRMVKELKDREEKRNSFSRRRR 264
               DLE+Y + KE     FY  A +  + ++ K +   I++MV +L+ + E+R  +SRRR 
Sbjct:   126 ARDLEKYERQKEELGDAFYGGAHTTLHSRT-KDTPGAINKMVTDLEQQIERRKKYSRRRI 184

Query:   265 FHEEKDIDSINDRNEHFNKKIERAFGKYTLEIKNNLERGTAL 306
             ++++ D+D IN+RN  FNKK++R + ++T EIK NLERGTA+
Sbjct:   185 YNDDADVDFINERNSKFNKKLDRFYSEHTAEIKQNLERGTAI 226

GO:0000398 "mRNA splicing, via spliceosome" evidence=IC

GO:0071011 "precatalytic spliceosome" evidence=IDA

GO:0071013 "catalytic step 2 spliceosome" evidence=IDA

GO:0022008 "neurogenesis" evidence=IMP

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	308
pfam08231	157	pfam08231, SYF2, SYF2 splicing factor	1e-40

>gnl|CDD|219755 pfam08231, SYF2, SYF2 splicing factor

 Score =  138 bits (350), Expect = 1e-40
 Identities = 70/159 (44%), Positives = 96/159 (60%), Gaps = 11/159 (6%)

Query: 152 DANGLDMTKAFMLD----TQEAAEAKYKKWEKDPAPFGWDVFNQKALYDAYKKRTKNVEV 207
           +  G+D  +   LD      E  + K KK +     FG++ + Q ALY AYK+R KN++ 
Sbjct: 1   EEQGIDFERKRALDWSAEESEKWDKKKKKKKNKD-DFGFNDYEQDALYRAYKRRLKNLKP 59

Query: 208 DLEEYNKMKEADPEFYR-----DASSLQYGKSPKISEDKIDRMVKELKDREEKRNSFSRR 262
           DLEEY K KEA  E +       A S+ Y  +    E  IDR+V++L+ ++EKR  FSRR
Sbjct: 60  DLEEYEKQKEAVGEKFYATFYRTADSILYTSNKPTEEA-IDRLVQDLEKQQEKRLKFSRR 118

Query: 263 RRFHEEKDIDSINDRNEHFNKKIERAFGKYTLEIKNNLE 301
           R F +E DID IN+RN+ FNKK++R + KYT EIK NLE
Sbjct: 119 RGFDDEADIDYINERNKKFNKKLDRFYDKYTAEIKQNLE 157

Proteins in this family are involved in cell cycle progression and pre-mRNA splicing. Length = 157

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	308
KOG2609	228	consensus Cyclin D-interacting protein GCIP [Cell	100.0
PF08231	153	SYF2: SYF2 splicing factor; InterPro: IPR013260 Pr	100.0

>KOG2609 consensus Cyclin D-interacting protein GCIP [Cell cycle control, cell division, chromosome partitioning; RNA processing and modification]

Probab=100.00  E-value=6.4e-56  Score=398.35  Aligned_cols=216  Identities=41%  Similarity=0.611  Sum_probs=194.8

Q ss_pred             CcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCchhhh-hhHHHHHHHHHHHHhhhHhhcCCchHHHHHHH-
Q 021740           88 GDFTKLTGRQKKLFELRLKMNEARKANQTAMVAEKKRMEPPQESRG-ISKQKWLEERKRKIGKLLDANGLDMTKAFMLD-  165 (308)
Q Consensus        88 ~~~~~m~~r~~RLkeLk~K~neark~N~kev~~E~kr~k~p~~~~~-~~k~~~~~e~~~~~~~~~~~~G~D~er~ytle-  165 (308)
                      .+...|..|++||++|+++|++|++.||.+|++|++++++|.+... .++..|...+ +.+..++.++|.|+++.++|+ 
T Consensus         6 ~~~~~~~~r~kR~~~L~k~R~eARk~nheeVv~E~~r~klp~~~ea~~~r~~~E~~e-~~~~~~~~a~G~D~er~r~le~   84 (228)
T KOG2609|consen    6 LDAKKLELRRKRVRELHKKRNEARKENHEEVVEEDRRMKLPKNWEARKERKEWELKE-KEKKKEAEAQGLDYERRRLLEG   84 (228)
T ss_pred             HhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhchhhccCCchhHHHHHHHhhhhhH-HHHHHHHHhccccHHHHhcccc
Confidence            3456789999999999999999999999999999999999986333 3444455444 367889999999999976655 


Q ss_pred             ---HHHHHHHHHhchhcCCCCCcchhhhHHHHHHHHhHhhhcCCCCHHHHHHhhh-cC-CccccCCcccccCCCCCCCHH
Q 021740          166 ---TQEAAEAKYKKWEKDPAPFGWDVFNQKALYDAYKKRTKNVEVDLEEYNKMKE-AD-PEFYRDASSLQYGKSPKISED  240 (308)
Q Consensus       166 ---~aE~wekk~kKK~kk~~~~gf~~~~q~A~~r~YkK~lk~lk~d~e~Y~kqK~-~~-~~fy~~adsl~~g~~~kpsee  240 (308)
                         .++.|++++.++.+-+++.||++|...++ ++|.+++..++||++.|.++++ .| ..||+++.++++| +++||.+
T Consensus        85 s~~~ser~~k~~~kk~k~n~~~~fs~Y~~qt~-~qynR~~~a~~~D~e~y~k~kE~~g~~~~~~~a~~~l~~-t~k~~~~  162 (228)
T KOG2609|consen   85 SAEDSERWEKKYDKKRKLNQDLGFSDYAAQTL-RQYNRLTAADPPDLEKYEKVKERLGSEAFYPTATTLLHG-THKPDTE  162 (228)
T ss_pred             cHHHHHHHHHhhhcccccchhhhhhHHHHHHH-HHHhhhhhccchhhhhHHHHHHhhchhhhcccchhhccc-CCCCCHH
Confidence               68899999888777789999999999996 9999999999999999999877 44 7899999999999 6899999


Q ss_pred             HHHHHHHHHHHHHHHHHhhhhhhccCCCCCCCccccchHHHHHHHHHHhhhhhHHHHhhhhccCCC
Q 021740          241 KIDRMVKELKDREEKRNSFSRRRRFHEEKDIDSINDRNEHFNKKIERAFGKYTLEIKNNLERGTAL  306 (308)
Q Consensus       241 aVdrLV~dL~k~~~kR~kfsRRR~~~dd~dvdYINERNk~FNkKLeR~Y~KyT~EIk~NLERGTAl  306 (308)
                      +||+||.+|.+|+++|++|||||++++++|||||||||++||+||+|||+|||.|||+||||||||
T Consensus       163 ~idKl~~~L~~q~kkR~k~srRR~~n~d~~idfINerN~kFNkKl~R~ysKyT~eIK~nLERGTAl  228 (228)
T KOG2609|consen  163 AIDKLVKDLEKQIKKRYKYSRRRMYNEDADIDFINERNKKFNKKLERFYSKYTEEIKQNLERGTAL  228 (228)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhccCCcccchhHHHHhHHHHHHHHHHHHhhhhHHHHHHHhccccC
Confidence            999999999999999999999999999999999999999999999999999999999999999998

>PF08231 SYF2: SYF2 splicing factor; InterPro: IPR013260 Proteins in this entry are involved in cell cycle progression and pre-mRNA splicing [, ]

Probab=100.00  E-value=7.5e-49  Score=340.50  Aligned_cols=147  Identities=50%  Similarity=0.800  Sum_probs=137.4

Q ss_pred             hcCCchHH----HHHHHHHHHHHHHHhchhcCCCCCcchhhhHHHHHHHHhHhhhcCCCCHHHHHHhhhcC-CccccCCc
Q 021740          153 ANGLDMTK----AFMLDTQEAAEAKYKKWEKDPAPFGWDVFNQKALYDAYKKRTKNVEVDLEEYNKMKEAD-PEFYRDAS  227 (308)
Q Consensus       153 ~~G~D~er----~ytle~aE~wekk~kKK~kk~~~~gf~~~~q~A~~r~YkK~lk~lk~d~e~Y~kqK~~~-~~fy~~ad  227 (308)
                      +.|+|++|    .|||+++|.|+++.++|... .++||++|+++|++++|+|+|++|+||++.|++++... ..||++++
T Consensus         2 ~~g~D~er~k~l~~t~~e~E~w~~K~~kk~~~-~~~g~~~~~~~a~~~~Y~K~~~~l~~d~e~Y~~~k~~~~~~fy~~~~   80 (153)
T PF08231_consen    2 EKGEDYERKKLLNYTAEEAEKWEKKKKKKKKN-KDFGFSDYNQDALYRQYKKRIKNLKPDMEEYEKQKEKLGEKFYRDAD   80 (153)
T ss_pred             CccccHHHHHHHHhhHHHHHHHHHHHHhccCC-CCcchhHHHHHHHHHHHHHHHHhccCCHHHHHHHHHhccccccCCCc
Confidence            57999997    47999999999998876554 78999999999988999999999999999999999854 45999999


Q ss_pred             ccccCCCCCCCHHHHHHHHHHHHHHHHHHHhhhhhhccCCCCCCCccccchHHHHHHHHHHhhhhhHHHHhhhh
Q 021740          228 SLQYGKSPKISEDKIDRMVKELKDREEKRNSFSRRRRFHEEKDIDSINDRNEHFNKKIERAFGKYTLEIKNNLE  301 (308)
Q Consensus       228 sl~~g~~~kpseeaVdrLV~dL~k~~~kR~kfsRRR~~~dd~dvdYINERNk~FNkKLeR~Y~KyT~EIk~NLE  301 (308)
                      +|+|| .++|++++|||||++|++++++|.+|||||.+++++||+|||+||++||+||+||||+||+|||+|||
T Consensus        81 ~l~~~-~~~~~~e~vdrlv~~l~k~~~kR~k~sRrR~~~d~~dv~YINerNk~FN~KL~R~y~kyT~eIk~nlE  153 (153)
T PF08231_consen   81 SLVYG-SHKPSPEAVDRLVNDLEKQIEKRKKFSRRRKFDDDADVDYINERNKQFNKKLERFYDKYTAEIKQNLE  153 (153)
T ss_pred             ccccC-CCCCCHHHHHHHHHHHHHHHHHHHHHhHhcccccCCCcCchhhhhHHHHHHHHHHHhHhHHHHHHhcC
Confidence            99999 58899999999999999999999999999999999999999999999999999999999999999998

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Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00