Citrus Sinensis ID: 021791

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------
Protein Sequence
MPNVKMYTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPNERFEKTIRNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHKPQLSLDKLNFMKEKGICPTVATYTSVVKCLCSCGRIEDAEELLGEMVRNGVSPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDDLCVPNIHTYNILIGMFMALNRMDMVREIWNHVKGSELGLDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDEESITFGSEFQNYHFKPYRR
Secondary Structure (PSIPRED)
cccHHHHHHHHHHHHccccHHHHHHHHHHHHHccccccccHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHccccccHHHHHHHHHHHHccccHHHHHHHHHHHHHccccccccHHHHHHHHHHccccHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHccccccHHHHHHHHHHHHccccHHHHHHHHHHHHHccccccHHHHHHHHHHHHccccHHHHHHHHHHHHHccccccHHHHHHHHccccc
Secondary Structure Prediction (SSPRO)
cccEEEHHHHHHHHHHcccHHHHHHHHHHHHHccccccEEEHHHHHHHHHHcccHHHHHHHHccHHHHHHHHHHHHHccccccEEEHHHHHHHHHHcccHHHHHHHHHHHHHccccccEEEHHHHHHHHHHcccHHHHHHHHHHHHHccccccEEEHHHHHHHHHHcccHHHHHHHHHHHHHcccccccEEEHHHHHHHHHHcccHHHHHHHHHHHHHccccccEEEHHHHHHHHHHcccHHHHHHHHHHHHHccccccEEEHHHHHHHHHHcccHHHHHHHHHHHHHccccccEEEHHHHHHHccc
Coil and Loop (DISEMBL)
MPNVKMYTSLIYGWCKINRIDMAERFLGEMiergvepnvVTYNVLLNGVcrraslhpnerFEKTIRNAEKVFDEmrvrgiepdvtSFSIVLHVYsrahkpqlsldklnfmkekgicptvaTYTSVVKCLCSCGRIEDAEELLGEMVrngvspsaetYNCFFkeyrgrkdanGAMKLYRQMKeddlcvpnihtYNILIGMFMALNRMDMVREIWNHVkgselgldldSYTMLIHGLCEKQKWKEACQYFVEMIekgllpqkvtfETLYRGLIQSDMLRTWRRLKKKLDeesitfgsefqnyhfkpyrr
Flexible Loop (DISEMBL)
MPNVKMYTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRraslhpnerfektIRNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHKPQLSLDKLNFMKEKGICPTVATYTSVVKCLCSCGRIEDAEELLGEMVRNGVSPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDDLCVPNIHTYNILIGMFMALNRMDMVREIWNHVKGSELGLDLDSYTMLIHGLCEKQKWKEACQYFVEMIekgllpqkVTFETLYRGLIQSDMLRTWRRLKKKldeesitfgsefqnyhfkpyrr
Low Complexity Region (SEG)
MPNVKMYTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPNERFEKTIRNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHKPQLSLDKLNFMKEKGICPTVATYTSVVKCLCSCGRIEDAEELLGEMVRNGVSPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDDLCVPNIHTYNILIGMFMALNRMDMVREIWNHVKGSELGLDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDEESITFGSEFQNYHFKPYRR
Disordered region (IsUnstruct)
****KMYTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPNERFEKTIRNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHKPQLSLDKLNFMKEKGICPTVATYTSVVKCLCSCGRIEDAEELLGEMVRNGVSPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDDLCVPNIHTYNILIGMFMALNRMDMVREIWNHVKGSELGLDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQSD*********************************
Disordered Region (DISOPRED)
MPNVKMYTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPNERFEKTIRNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHKPQLSLDKLNFMKEKGICPTVATYTSVVKCLCSCGRIEDAEELLGEMVRNGVSPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDDLCVPNIHTYNILIGMFMALNRMDMVREIWNHVKGSELGLDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDEESITFGSEFQNYHFKPYRR
Disordered Region (DISEMBL)
MPNVKMYTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPNERFEKTIRNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHKPQLSLDKLNFMKEKGICPTVATYTSVVKCLCSCGRIEDAEELLGEMVRNGVSPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDDLCVPNIHTYNILIGMFMALNRMDMVREIWNHVKGSELGLDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDEESITFGSEFQNYHFKPYRR
Disordered Region (DISPRO)
MPNVKMYTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPNERFEKTIRNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHKPQLSLDKLNFMKEKGICPTVATYTSVVKCLCSCGRIEDAEELLGEMVRNGVSPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDDLCVPNIHTYNILIGMFMALNRMDMVREIWNHVKGSELGLDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDEESITFGSEFQNYHFKPYRR
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MPNVKMYTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPxxxxxxxxxxxxxxxxxxxxxGIEPDVTSFSIVLHVYSRAHKPQLSLDKLNFMKEKGICPTVATYTSVVKCLCSCGRIEDAEELLGEMVRNGVSPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDDLCVPNIHTYNILIGMFMALNRMDMVREIWNHVKGSELGLDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDEESITFGSEFQNYHFKPYRR
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	307	2.2.26 [Sep-21-2011]
Q0WP85	509	Pentatricopeptide repeat-	yes	no	0.983	0.593	0.742	1e-133
Q9SSR6	523	Pentatricopeptide repeat-	yes	no	0.908	0.533	0.309	8e-39
Q9C8T7	559	Pentatricopeptide repeat-	no	no	0.908	0.499	0.296	2e-36
Q9SXD8	634	Pentatricopeptide repeat-	no	no	0.960	0.465	0.290	1e-35
Q9LN22	537	Pentatricopeptide repeat-	no	no	0.908	0.519	0.298	1e-35
Q9S7R4	482	Pentatricopeptide repeat-	no	no	0.827	0.526	0.302	3e-34
Q9LZP3	599	Pentatricopeptide repeat-	no	no	0.794	0.407	0.294	5e-34
Q9LEQ7	598	Pentatricopeptide repeat-	no	no	0.794	0.408	0.294	1e-33
Q3EAF8	599	Pentatricopeptide repeat-	no	no	0.794	0.407	0.294	1e-33
Q3ECK2	548	Pentatricopeptide repeat-	no	no	0.908	0.509	0.286	2e-33

>sp|Q0WP85|PP150_ARATH Pentatricopeptide repeat-containing protein At2g13420, mitochondrial OS=Arabidopsis thaliana GN=At2g13420 PE=2 SV=1

 Score =  475 bits (1223), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 225/303 (74%), Positives = 263/303 (86%), Gaps = 1/303 (0%)

Query: 5   KMYTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPNERFEKT 64
           K+YT LI GWCK+ RIDMAE+FL EMIE G+EPNVVTYNVLLNG+CR ASLHP ERFE+ 
Sbjct: 208 KVYTILIAGWCKLRRIDMAEKFLVEMIESGIEPNVVTYNVLLNGICRTASLHPEERFERN 267

Query: 65  IRNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHKPQLSLDKLNFMKEKGICPTVATYTS 124
           +RNAEKVFDEMR RGIEPDVTSFSIVLH+YSRAHK +L+LDK+  MK KGI PT+ TYTS
Sbjct: 268 VRNAEKVFDEMRQRGIEPDVTSFSIVLHMYSRAHKAELTLDKMKLMKAKGISPTIETYTS 327

Query: 125 VVKCLCSCGRIEDAEELLGEMVRNGVSPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDD 184
           VVKCLCSCGR+E+AEELL  MV +G+SPS+ TYNCFFKEY+GRKDANGAM LYR+MK + 
Sbjct: 328 VVKCLCSCGRLEEAEELLETMVESGISPSSATYNCFFKEYKGRKDANGAMNLYRKMK-NG 386

Query: 185 LCVPNIHTYNILIGMFMALNRMDMVREIWNHVKGSELGLDLDSYTMLIHGLCEKQKWKEA 244
           LC P+  TYN+L+G F+ L +M+ V+EIW+ +K SE G DLDSYT L+HGLC K+KWKEA
Sbjct: 387 LCKPSTQTYNVLLGTFINLGKMETVKEIWDDLKASETGPDLDSYTSLVHGLCSKEKWKEA 446

Query: 245 CQYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDEESITFGSEFQNYHFKP 304
           C YFVEMIE+G LPQK+TFETLY+GLIQS+ +RTWRRLKKKLDEESITFGSEFQ Y F+P
Sbjct: 447 CGYFVEMIERGFLPQKLTFETLYKGLIQSNKMRTWRRLKKKLDEESITFGSEFQRYPFEP 506

Query: 305 YRR 307
           Y+R
Sbjct: 507 YKR 509

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SSR6|PPR78_ARATH Pentatricopeptide repeat-containing protein At1g52640, mitochondrial OS=Arabidopsis thaliana GN=At1g52640 PE=2 SV=1

 Score =  160 bits (406), Expect = 8e-39,   Method: Compositional matrix adjust.
 Identities = 90/291 (30%), Positives = 148/291 (50%), Gaps = 12/291 (4%)

Query: 1   MPNVKMYTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPNER 60
           +P+ K Y+ L+ GW +I     A +   EM+ER    +++ YN LL+ +C+         
Sbjct: 205 VPSAKTYSILVRGWARIRDASGARKVFDEMLERNCVVDLLAYNALLDALCKSGD------ 258

Query: 61  FEKTIRNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHKPQLSLDKLNFMKEKGICPTVA 120
               +    K+F EM   G++PD  SF+I +H Y  A     +   L+ MK   + P V 
Sbjct: 259 ----VDGGYKMFQEMGNLGLKPDAYSFAIFIHAYCDAGDVHSAYKVLDRMKRYDLVPNVY 314

Query: 121 TYTSVVKCLCSCGRIEDAEELLGEMVRNGVSPSAETYNCFFKEYRGRKDANGAMKLYRQM 180
           T+  ++K LC   +++DA  LL EM++ G +P   TYN     +    + N A KL  +M
Sbjct: 315 TFNHIIKTLCKNEKVDDAYLLLDEMIQKGANPDTWTYNSIMAYHCDHCEVNRATKLLSRM 374

Query: 181 KEDDLCVPNIHTYNILIGMFMALNRMDMVREIWNHVKGSELGLDLDSYTMLIHGLCEKQ- 239
                C+P+ HTYN+++ + + + R D   EIW  +   +    + +YT++IHGL  K+ 
Sbjct: 375 DRTK-CLPDRHTYNMVLKLLIRIGRFDRATEIWEGMSERKFYPTVATYTVMIHGLVRKKG 433

Query: 240 KWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDEES 290
           K +EAC+YF  MI++G+ P   T E L   L+    +     L  K++  S
Sbjct: 434 KLEEACRYFEMMIDEGIPPYSTTVEMLRNRLVGWGQMDVVDVLAGKMERSS 484

Arabidopsis thaliana (taxid: 3702)

>sp|Q9C8T7|PP101_ARATH Pentatricopeptide repeat-containing protein At1g63330 OS=Arabidopsis thaliana GN=At1g63330 PE=2 SV=2

 Score =  153 bits (386), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 86/290 (29%), Positives = 151/290 (52%), Gaps = 11/290 (3%)

Query: 2   PNVKMYTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPNERF 61
           P+   +T+LI+G    N+   A   +  M++RG +PN+VTY V++NG+C+R         
Sbjct: 113 PDTITFTTLIHGLFLHNKASEAVALVDRMVQRGCQPNLVTYGVVVNGLCKRGD------- 165

Query: 62  EKTIRNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHKPQLSLDKLNFMKEKGICPTVAT 121
              I  A  + ++M    IE DV  F+ ++    +      +L+    M+ KGI P V T
Sbjct: 166 ---IDLAFNLLNKMEAAKIEADVVIFNTIIDSLCKYRHVDDALNLFKEMETKGIRPNVVT 222

Query: 122 YTSVVKCLCSCGRIEDAEELLGEMVRNGVSPSAETYNCFFKEYRGRKDANGAMKLYRQMK 181
           Y+S++ CLCS GR  DA +LL +M+   ++P+  T+N     +        A KL+  M 
Sbjct: 223 YSSLISCLCSYGRWSDASQLLSDMIEKKINPNLVTFNALIDAFVKEGKFVEAEKLHDDMI 282

Query: 182 EDDLCVPNIHTYNILIGMFMALNRMDMVREIWNHVKGSELGLDLDSYTMLIHGLCEKQKW 241
           +  +  P+I TYN LI  F   +R+D  ++++  +   +   DLD+Y  LI G C+ ++ 
Sbjct: 283 KRSI-DPDIFTYNSLINGFCMHDRLDKAKQMFEFMVSKDCFPDLDTYNTLIKGFCKSKRV 341

Query: 242 KEACQYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDEESI 291
           ++  + F EM  +GL+   VT+ TL +GL         +++ K++  + +
Sbjct: 342 EDGTELFREMSHRGLVGDTVTYTTLIQGLFHDGDCDNAQKVFKQMVSDGV 391

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SXD8|PPR90_ARATH Pentatricopeptide repeat-containing protein At1g62590 OS=Arabidopsis thaliana GN=At1g62590 PE=2 SV=1

 Score =  150 bits (380), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 89/306 (29%), Positives = 152/306 (49%), Gaps = 11/306 (3%)

Query: 2   PNVKMYTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPNERF 61
           PNV  Y+SLI   C   R   A + L +MIE+ + PN+VT+N L++   +          
Sbjct: 293 PNVVTYSSLISCLCSYGRWSDASQLLSDMIEKKINPNLVTFNALIDAFVK---------- 342

Query: 62  EKTIRNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHKPQLSLDKLNFMKEKGICPTVAT 121
           E     AEK++D+M  R I+PD+ +++ +++ +    +   +     FM  K   P V T
Sbjct: 343 EGKFVEAEKLYDDMIKRSIDPDIFTYNSLVNGFCMHDRLDKAKQMFEFMVSKDCFPDVVT 402

Query: 122 YTSVVKCLCSCGRIEDAEELLGEMVRNGVSPSAETYNCFFKEYRGRKDANGAMKLYRQMK 181
           Y +++K  C   R+ED  EL  EM   G+     TY    +      D + A K+++QM 
Sbjct: 403 YNTLIKGFCKSKRVEDGTELFREMSHRGLVGDTVTYTTLIQGLFHDGDCDNAQKVFKQMV 462

Query: 182 EDDLCVPNIHTYNILIGMFMALNRMDMVREIWNHVKGSELGLDLDSYTMLIHGLCEKQKW 241
            D +  P+I TY+IL+       +++   E++++++ SE+ LD+  YT +I G+C+  K 
Sbjct: 463 SDGV-PPDIMTYSILLDGLCNNGKLEKALEVFDYMQKSEIKLDIYIYTTMIEGMCKAGKV 521

Query: 242 KEACQYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDEESITFGSEFQNYH 301
            +    F  +  KG+ P  VT+ T+  GL    +L+    L KK+ E+     S   N  
Sbjct: 522 DDGWDLFCSLSLKGVKPNVVTYNTMISGLCSKRLLQEAYALLKKMKEDGPLPNSGTYNTL 581

Query: 302 FKPYRR 307
            + + R
Sbjct: 582 IRAHLR 587

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LN22|PPR54_ARATH Pentatricopeptide repeat-containing protein At1g20300, mitochondrial OS=Arabidopsis thaliana GN=At1g20300 PE=2 SV=1

 Score =  150 bits (380), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 87/291 (29%), Positives = 152/291 (52%), Gaps = 12/291 (4%)

Query: 2   PNVKMYTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPNERF 61
           P+V +YT+L+ GWC+   I  AE+   EM   G+EPNV TY+++++ +CR          
Sbjct: 253 PDVIVYTNLVRGWCRAGEISEAEKVFKEMKLAGIEPNVYTYSIVIDALCRCGQ------- 305

Query: 62  EKTIRNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHKPQLSLDKLNFMKEKGICPTVAT 121
              I  A  VF +M   G  P+  +F+ ++ V+ +A + +  L   N MK+ G  P   T
Sbjct: 306 ---ISRAHDVFADMLDSGCAPNAITFNNLMRVHVKAGRTEKVLQVYNQMKKLGCEPDTIT 362

Query: 122 YTSVVKCLCSCGRIEDAEELLGEMVRNGVSPSAETYNCFFKEYRGRKDANGAMKLYRQMK 181
           Y  +++  C    +E+A ++L  M++     +A T+N  F+    ++D NGA ++Y +M 
Sbjct: 363 YNFLIEAHCRDENLENAVKVLNTMIKKKCEVNASTFNTIFRYIEKKRDVNGAHRMYSKMM 422

Query: 182 EDDLCVPNIHTYNILIGMFMALNRMDMVREIWNHVKGSELGLDLDSYTMLIHGLCEKQKW 241
           E   C PN  TYNIL+ MF+     DMV ++   +   E+  ++++Y +L+   C    W
Sbjct: 423 EAK-CEPNTVTYNILMRMFVGSKSTDMVLKMKKEMDDKEVEPNVNTYRLLVTMFCGMGHW 481

Query: 242 KEACQYFVEMI-EKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDEESI 291
             A + F EM+ EK L P    +E +   L ++  L+    L +K+ ++ +
Sbjct: 482 NNAYKLFKEMVEEKCLTPSLSLYEMVLAQLRRAGQLKKHEELVEKMIQKGL 532

Arabidopsis thaliana (taxid: 3702)

>sp|Q9S7R4|PP125_ARATH Pentatricopeptide repeat-containing protein At1g74900, mitochondrial OS=Arabidopsis thaliana GN=OTP43 PE=2 SV=1

 Score =  145 bits (366), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 81/268 (30%), Positives = 146/268 (54%), Gaps = 14/268 (5%)

Query: 7   YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPNERFEKTIR 66
           Y  ++ GWC I R   A   L EM+ERG+ PN+ TYN +L G  R             IR
Sbjct: 198 YNVILNGWCLIKRTPKALEVLKEMVERGINPNLTTYNTMLKGFFRAGQ----------IR 247

Query: 67  NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHKPQLSLDKLNFMKEKGICPTVATYTSVV 126
           +A + F EM+ R  E DV +++ V+H +  A + + + +  + M  +G+ P+VATY +++
Sbjct: 248 HAWEFFLEMKKRDCEIDVVTYTTVVHGFGVAGEIKRARNVFDEMIREGVLPSVATYNAMI 307

Query: 127 KCLCSCGRIEDAEELLGEMVRNGVSPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDDLC 186
           + LC    +E+A  +  EMVR G  P+  TYN   +      + +   +L ++M E++ C
Sbjct: 308 QVLCKKDNVENAVVMFEEMVRRGYEPNVTTYNVLIRGLFHAGEFSRGEELMQRM-ENEGC 366

Query: 187 VPNIHTYNILIGMFMALNRMDMVREIWNHVKGSELGLDLDSYTMLIHGLCEKQKWKE--- 243
            PN  TYN++I  +   + ++    ++  +   +   +LD+Y +LI G+  +++ ++   
Sbjct: 367 EPNFQTYNMMIRYYSECSEVEKALGLFEKMGSGDCLPNLDTYNILISGMFVRKRSEDMVV 426

Query: 244 ACQYFVEMIEKGLLPQKVTFETLYRGLI 271
           A +  +EM+E+G +P+K TF  +  GL+
Sbjct: 427 AGKLLLEMVERGFIPRKFTFNRVLNGLL 454

Required for the trans-splicing of intron 1 of the mitochondrial nad1 transcript encoding the ND1 subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I).

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LZP3|PP293_ARATH Pentatricopeptide repeat-containing protein At3g62470, mitochondrial OS=Arabidopsis thaliana GN=At3g62470 PE=2 SV=1

 Score =  145 bits (365), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 75/255 (29%), Positives = 142/255 (55%), Gaps = 11/255 (4%)

Query: 2   PNVKMYTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPNERF 61
           PN+  YT L+ GWC++  +  A R   +MI++G++P++V +NV+L G+ R          
Sbjct: 296 PNMMTYTVLLNGWCRVRNLIEAARIWNDMIDQGLKPDIVAHNVMLEGLLR---------- 345

Query: 62  EKTIRNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHKPQLSLDKLNFMKEKGICPTVAT 121
            +   +A K+F  M+ +G  P+V S++I++  + +    + +++  + M + G+ P  A 
Sbjct: 346 SRKKSDAIKLFHVMKSKGPCPNVRSYTIMIRDFCKQSSMETAIEYFDDMVDSGLQPDAAV 405

Query: 122 YTSVVKCLCSCGRIEDAEELLGEMVRNGVSPSAETYNCFFKEYRGRKDANGAMKLYRQMK 181
           YT ++    +  +++   ELL EM   G  P  +TYN   K    +K    A ++Y +M 
Sbjct: 406 YTCLITGFGTQKKLDTVYELLKEMQEKGHPPDGKTYNALIKLMANQKMPEHATRIYNKMI 465

Query: 182 EDDLCVPNIHTYNILIGMFMALNRMDMVREIWNHVKGSELGLDLDSYTMLIHGLCEKQKW 241
           ++++  P+IHT+N+++  +      +M R +W  +    +  D +SYT+LI GL  + K 
Sbjct: 466 QNEI-EPSIHTFNMIMKSYFMARNYEMGRAVWEEMIKKGICPDDNSYTVLIRGLIGEGKS 524

Query: 242 KEACQYFVEMIEKGL 256
           +EAC+Y  EM++KG+
Sbjct: 525 REACRYLEEMLDKGM 539

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LEQ7|PP382_ARATH Pentatricopeptide repeat-containing protein At5g14820, mitochondrial OS=Arabidopsis thaliana GN=At5g14820 PE=2 SV=1

 Score =  143 bits (361), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 75/255 (29%), Positives = 143/255 (56%), Gaps = 11/255 (4%)

Query: 2   PNVKMYTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPNERF 61
           PN+  YT L+ GWC++  +  A R   +MI+ G++P++V +NV+L G+ R  S+  +   
Sbjct: 295 PNMMTYTVLLNGWCRVRNLIEAARIWNDMIDHGLKPDIVAHNVMLEGLLR--SMKKS--- 349

Query: 62  EKTIRNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHKPQLSLDKLNFMKEKGICPTVAT 121
                +A K+F  M+ +G  P+V S++I++  + +    + +++  + M + G+ P  A 
Sbjct: 350 -----DAIKLFHVMKSKGPCPNVRSYTIMIRDFCKQSSMETAIEYFDDMVDSGLQPDAAV 404

Query: 122 YTSVVKCLCSCGRIEDAEELLGEMVRNGVSPSAETYNCFFKEYRGRKDANGAMKLYRQMK 181
           YT ++    +  +++   ELL EM   G  P  +TYN   K    +K      ++Y +M 
Sbjct: 405 YTCLITGFGTQKKLDTVYELLKEMQEKGHPPDGKTYNALIKLMANQKMPEHGTRIYNKMI 464

Query: 182 EDDLCVPNIHTYNILIGMFMALNRMDMVREIWNHVKGSELGLDLDSYTMLIHGLCEKQKW 241
           ++++  P+IHT+N+++  +      +M R +W+ +    +  D +SYT+LI GL  + K 
Sbjct: 465 QNEI-EPSIHTFNMIMKSYFVARNYEMGRAVWDEMIKKGICPDDNSYTVLIRGLISEGKS 523

Query: 242 KEACQYFVEMIEKGL 256
           +EAC+Y  EM++KG+
Sbjct: 524 REACRYLEEMLDKGM 538

Arabidopsis thaliana (taxid: 3702)

>sp|Q3EAF8|PP294_ARATH Pentatricopeptide repeat-containing protein At3g62540, mitochondrial OS=Arabidopsis thaliana GN=At3g62540 PE=2 SV=1

 Score =  143 bits (361), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 75/255 (29%), Positives = 143/255 (56%), Gaps = 11/255 (4%)

Query: 2   PNVKMYTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPNERF 61
           PN+  YT L+ GWC++  +  A R   +MI+ G++P++V +NV+L G+ R  S+  +   
Sbjct: 296 PNMMTYTVLLNGWCRVRNLIEAARIWNDMIDHGLKPDIVAHNVMLEGLLR--SMKKS--- 350

Query: 62  EKTIRNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHKPQLSLDKLNFMKEKGICPTVAT 121
                +A K+F  M+ +G  P+V S++I++  + +    + +++  + M + G+ P  A 
Sbjct: 351 -----DAIKLFHVMKSKGPCPNVRSYTIMIRDFCKQSSMETAIEYFDDMVDSGLQPDAAV 405

Query: 122 YTSVVKCLCSCGRIEDAEELLGEMVRNGVSPSAETYNCFFKEYRGRKDANGAMKLYRQMK 181
           YT ++    +  +++   ELL EM   G  P  +TYN   K    +K      ++Y +M 
Sbjct: 406 YTCLITGFGTQKKLDTVYELLKEMQEKGHPPDGKTYNALIKLMANQKMPEHGTRIYNKMI 465

Query: 182 EDDLCVPNIHTYNILIGMFMALNRMDMVREIWNHVKGSELGLDLDSYTMLIHGLCEKQKW 241
           ++++  P+IHT+N+++  +      +M R +W+ +    +  D +SYT+LI GL  + K 
Sbjct: 466 QNEI-EPSIHTFNMIMKSYFVARNYEMGRAVWDEMIKKGICPDDNSYTVLIRGLISEGKS 524

Query: 242 KEACQYFVEMIEKGL 256
           +EAC+Y  EM++KG+
Sbjct: 525 REACRYLEEMLDKGM 539

Arabidopsis thaliana (taxid: 3702)

>sp|Q3ECK2|PPR92_ARATH Pentatricopeptide repeat-containing protein At1g62680, mitochondrial OS=Arabidopsis thaliana GN=At1g62680 PE=2 SV=2

 Score =  142 bits (359), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 83/290 (28%), Positives = 145/290 (50%), Gaps = 11/290 (3%)

Query: 2   PNVKMYTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPNERF 61
           PNV  YT+L+ G C  +R   A R L +MI++ + PNV+TY+ LL+   +          
Sbjct: 223 PNVVTYTALVNGLCNSSRWSDAARLLSDMIKKKITPNVITYSALLDAFVKNGK------- 275

Query: 62  EKTIRNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHKPQLSLDKLNFMKEKGICPTVAT 121
              +  A+++F+EM    I+PD+ ++S +++      +   +    + M  KG    V +
Sbjct: 276 ---VLEAKELFEEMVRMSIDPDIVTYSSLINGLCLHDRIDEANQMFDLMVSKGCLADVVS 332

Query: 122 YTSVVKCLCSCGRIEDAEELLGEMVRNGVSPSAETYNCFFKEYRGRKDANGAMKLYRQMK 181
           Y +++   C   R+ED  +L  EM + G+  +  TYN   + +    D + A + + QM 
Sbjct: 333 YNTLINGFCKAKRVEDGMKLFREMSQRGLVSNTVTYNTLIQGFFQAGDVDKAQEFFSQMD 392

Query: 182 EDDLCVPNIHTYNILIGMFMALNRMDMVREIWNHVKGSELGLDLDSYTMLIHGLCEKQKW 241
              +  P+I TYNIL+G       ++    I+  ++  E+ LD+ +YT +I G+C+  K 
Sbjct: 393 FFGIS-PDIWTYNILLGGLCDNGELEKALVIFEDMQKREMDLDIVTYTTVIRGMCKTGKV 451

Query: 242 KEACQYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDEESI 291
           +EA   F  +  KGL P  VT+ T+  GL    +L     L  K+ +E +
Sbjct: 452 EEAWSLFCSLSLKGLKPDIVTYTTMMSGLCTKGLLHEVEALYTKMKQEGL 501

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	307
225431703	525	PREDICTED: pentatricopeptide repeat-cont	0.899	0.525	0.786	1e-149
147767583	525	hypothetical protein VITISV_039678 [Viti	0.899	0.525	0.780	1e-147
224081016	548	predicted protein [Populus trichocarpa]	0.947	0.531	0.807	1e-146
255542990	511	pentatricopeptide repeat-containing prot	1.0	0.600	0.758	1e-143
357455845	503	Pentatricopeptide repeat-containing prot	1.0	0.610	0.762	1e-142
449457341	506	PREDICTED: pentatricopeptide repeat-cont	0.944	0.573	0.757	1e-140
356499253	510	PREDICTED: pentatricopeptide repeat-cont	0.996	0.6	0.738	1e-136
122236160	509	RecName: Full=Pentatricopeptide repeat-c	0.983	0.593	0.742	1e-132
242071011	528	hypothetical protein SORBIDRAFT_05g01805	0.996	0.579	0.674	1e-128
125561327	511	hypothetical protein OsI_29018 [Oryza sa	0.996	0.598	0.667	1e-127

>gi|225431703|ref|XP_002264696.1| PREDICTED: pentatricopeptide repeat-containing protein At2g13420, mitochondrial [Vitis vinifera] gi|296088528|emb|CBI37519.3| unnamed protein product [Vitis vinifera]

 Score =  533 bits (1372), Expect = e-149,   Method: Compositional matrix adjust.
 Identities = 240/305 (78%), Positives = 281/305 (92%)

Query: 3   NVKMYTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPNERFE 62
           N KMYT LIYGWCKINR+ +AER LGEM+ERG+E NVVTYNVLLNG+CRRASLHP++RFE
Sbjct: 221 NAKMYTILIYGWCKINRVSIAERLLGEMVERGIEANVVTYNVLLNGICRRASLHPDDRFE 280

Query: 63  KTIRNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHKPQLSLDKLNFMKEKGICPTVATY 122
           +TIR+AEKV DEMR +GIEPDVTS+SIV+HVYSRAHKP+L+LDKL  MK+KGI PTVATY
Sbjct: 281 RTIRDAEKVLDEMRQKGIEPDVTSYSIVIHVYSRAHKPELTLDKLRMMKDKGIWPTVATY 340

Query: 123 TSVVKCLCSCGRIEDAEELLGEMVRNGVSPSAETYNCFFKEYRGRKDANGAMKLYRQMKE 182
           TSVVKCLCSCGR+EDAEEL+ +MV++GVSPSA TYNCFFKEYRGRKD++ A++LYR+MKE
Sbjct: 341 TSVVKCLCSCGRLEDAEELVSDMVKDGVSPSAATYNCFFKEYRGRKDSDNALRLYRKMKE 400

Query: 183 DDLCVPNIHTYNILIGMFMALNRMDMVREIWNHVKGSELGLDLDSYTMLIHGLCEKQKWK 242
           +  C+P++HTYNIL+GMF+ LNRM++V+EIW+ +K S  G DLDSYT+LIHGLCEKQKWK
Sbjct: 401 EYSCLPDMHTYNILVGMFVKLNRMEIVQEIWDDMKTSGAGPDLDSYTLLIHGLCEKQKWK 460

Query: 243 EACQYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDEESITFGSEFQNYHF 302
           EAC +FVEMIEKG LPQK+TFETLYRGLIQSDML+TWRRLKKKL+EESITFGSEFQ YHF
Sbjct: 461 EACHFFVEMIEKGYLPQKITFETLYRGLIQSDMLKTWRRLKKKLEEESITFGSEFQQYHF 520

Query: 303 KPYRR 307
           KPYRR
Sbjct: 521 KPYRR 525

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147767583|emb|CAN60200.1| hypothetical protein VITISV_039678 [Vitis vinifera]

 Score =  526 bits (1354), Expect = e-147,   Method: Compositional matrix adjust.
 Identities = 238/305 (78%), Positives = 278/305 (91%)

Query: 3   NVKMYTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPNERFE 62
           N KMYT LIYGWCKINR+ +AER LGEM+ERG+  NVVTYNVLLNG+CR ASLHP++RFE
Sbjct: 221 NAKMYTILIYGWCKINRVSIAERLLGEMVERGJXANVVTYNVLLNGICRXASLHPDDRFE 280

Query: 63  KTIRNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHKPQLSLDKLNFMKEKGICPTVATY 122
           +TIR+AEKV DEMR  GIEPDVTS+SIV+HVYSRAHKP+L+LDKL  MK+KGI PTVATY
Sbjct: 281 RTIRDAEKVLDEMRQXGIEPDVTSYSIVIHVYSRAHKPELTLDKLRMMKDKGIWPTVATY 340

Query: 123 TSVVKCLCSCGRIEDAEELLGEMVRNGVSPSAETYNCFFKEYRGRKDANGAMKLYRQMKE 182
           TSVVKCLCSCGR+EDAEEL+ +MV++GVSPSA TYNCFFKEYRGRKD++ A++LYR+MKE
Sbjct: 341 TSVVKCLCSCGRLEDAEELVSDMVKDGVSPSAATYNCFFKEYRGRKDSDNALRLYRKMKE 400

Query: 183 DDLCVPNIHTYNILIGMFMALNRMDMVREIWNHVKGSELGLDLDSYTMLIHGLCEKQKWK 242
           +  C+P++HTYNIL+GMF+ LNRM++V+EIW+ +K S  G DLDSYT+LIHGLCEKQKWK
Sbjct: 401 EYSCLPDMHTYNILVGMFVKLNRMEIVQEIWDDMKTSGAGPDLDSYTLLIHGLCEKQKWK 460

Query: 243 EACQYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDEESITFGSEFQNYHF 302
           EAC +FVEMIEKG LPQK+TFETLYRGLIQSDML+TWRRLKKKL+EESITFGSEFQ YHF
Sbjct: 461 EACHFFVEMIEKGYLPQKITFETLYRGLIQSDMLKTWRRLKKKLEEESITFGSEFQXYHF 520

Query: 303 KPYRR 307
           KPYRR
Sbjct: 521 KPYRR 525

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224081016|ref|XP_002306265.1| predicted protein [Populus trichocarpa] gi|222855714|gb|EEE93261.1| predicted protein [Populus trichocarpa]

 Score =  523 bits (1346), Expect = e-146,   Method: Compositional matrix adjust.
 Identities = 247/306 (80%), Positives = 270/306 (88%)

Query: 2   PNVKMYTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPNERF 61
           PNVKMYT LIYGWCKI RIDMAERFL E  ERG+E  VVTYNVLLNG+CRRASLHP  RF
Sbjct: 243 PNVKMYTVLIYGWCKIGRIDMAERFLKETGERGIEATVVTYNVLLNGICRRASLHPESRF 302

Query: 62  EKTIRNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHKPQLSLDKLNFMKEKGICPTVAT 121
           E+TI  AE +FDEMR RGIEPDVTSFSIVLHVYSRAHKP+L+LDKL  MKEKGICP+V T
Sbjct: 303 ERTITLAENLFDEMRERGIEPDVTSFSIVLHVYSRAHKPELTLDKLKLMKEKGICPSVVT 362

Query: 122 YTSVVKCLCSCGRIEDAEELLGEMVRNGVSPSAETYNCFFKEYRGRKDANGAMKLYRQMK 181
           YTSVVKCLCSCGRIEDAEELLGEMVRNGVS +A TYNCFFKEY GRKDA  A+KLY++M+
Sbjct: 363 YTSVVKCLCSCGRIEDAEELLGEMVRNGVSRTAVTYNCFFKEYMGRKDAESALKLYKKMR 422

Query: 182 EDDLCVPNIHTYNILIGMFMALNRMDMVREIWNHVKGSELGLDLDSYTMLIHGLCEKQKW 241
           ED L    +H+YNIL+ MFM LNR+D+V EIW  +K S LG DLDSYTMLIHGLCEK+KW
Sbjct: 423 EDGLGSLGLHSYNILLRMFMMLNRLDIVNEIWEDLKSSGLGPDLDSYTMLIHGLCEKEKW 482

Query: 242 KEACQYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDEESITFGSEFQNYH 301
           +EAC++FVEMIEKGLLPQKVTFETLY+GLIQSDMLRTWRRLKKKLDEESITFGSEFQNY 
Sbjct: 483 REACKFFVEMIEKGLLPQKVTFETLYKGLIQSDMLRTWRRLKKKLDEESITFGSEFQNYQ 542

Query: 302 FKPYRR 307
            KPYRR
Sbjct: 543 LKPYRR 548

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255542990|ref|XP_002512558.1| pentatricopeptide repeat-containing protein, putative [Ricinus communis] gi|223548519|gb|EEF50010.1| pentatricopeptide repeat-containing protein, putative [Ricinus communis]

 Score =  513 bits (1322), Expect = e-143,   Method: Compositional matrix adjust.
 Identities = 233/307 (75%), Positives = 271/307 (88%)

Query: 1   MPNVKMYTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPNER 60
           +PNV++YT LIYGWCKI RIDMAERF+ EM E G+E NVVTYNVLL+G+CRRA L P  R
Sbjct: 205 LPNVRIYTVLIYGWCKIGRIDMAERFIREMDEMGIEANVVTYNVLLDGICRRAKLQPEGR 264

Query: 61  FEKTIRNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHKPQLSLDKLNFMKEKGICPTVA 120
           FE+TI  A+KVFDEMR +GIEPDVTSFSI+LHVYSRAHKPQL++DKL  M+E GICPTVA
Sbjct: 265 FERTIMKADKVFDEMRQKGIEPDVTSFSILLHVYSRAHKPQLTVDKLKLMEEMGICPTVA 324

Query: 121 TYTSVVKCLCSCGRIEDAEELLGEMVRNGVSPSAETYNCFFKEYRGRKDANGAMKLYRQM 180
           TYTSV+KCLCSCGRI+DAEELL +MVRNGVSP+A TYNCFFKEYRGRKD   A+KLYR++
Sbjct: 325 TYTSVLKCLCSCGRIDDAEELLEQMVRNGVSPNAATYNCFFKEYRGRKDPETALKLYRKI 384

Query: 181 KEDDLCVPNIHTYNILIGMFMALNRMDMVREIWNHVKGSELGLDLDSYTMLIHGLCEKQK 240
           ++++LC P++HTYNIL+GMFM LNR ++V EIWN ++ S  G DLDSYT+L+HGLCEKQK
Sbjct: 385 RQENLCDPSVHTYNILLGMFMKLNRFNIVNEIWNDLRSSGSGPDLDSYTLLVHGLCEKQK 444

Query: 241 WKEACQYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDEESITFGSEFQNY 300
           W++ACQ+FVEMIEKGLLPQK TFE LY GLIQS+MLRTWRRLKKKLDEESI FGSEF NY
Sbjct: 445 WQKACQFFVEMIEKGLLPQKATFEMLYAGLIQSNMLRTWRRLKKKLDEESIAFGSEFSNY 504

Query: 301 HFKPYRR 307
           H KPYRR
Sbjct: 505 HLKPYRR 511

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357455845|ref|XP_003598203.1| Pentatricopeptide repeat-containing protein [Medicago truncatula] gi|355487251|gb|AES68454.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]

 Score =  509 bits (1310), Expect = e-142,   Method: Compositional matrix adjust.
 Identities = 234/307 (76%), Positives = 265/307 (86%)

Query: 1   MPNVKMYTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPNER 60
           + +VKMYT LIYGWCKI R   A  FL EM  +GVEPNVVTYNV+LNG+CR+ASLHP ER
Sbjct: 197 VADVKMYTVLIYGWCKIGRFKTALSFLNEMKVKGVEPNVVTYNVILNGICRKASLHPEER 256

Query: 61  FEKTIRNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHKPQLSLDKLNFMKEKGICPTVA 120
           FE+TIR+AEKVFDEMR  GIEPDVTSFSIVLHVYSRAHKPQL LDKL  MKEKGICP V 
Sbjct: 257 FERTIRDAEKVFDEMRESGIEPDVTSFSIVLHVYSRAHKPQLVLDKLGLMKEKGICPNVV 316

Query: 121 TYTSVVKCLCSCGRIEDAEELLGEMVRNGVSPSAETYNCFFKEYRGRKDANGAMKLYRQM 180
           TYTSV+KCLCSCGRIE+AE+L+ EMVRNGVSP A TYNCFFKEYRGRKDA+ A+K +++M
Sbjct: 317 TYTSVIKCLCSCGRIEEAEDLIDEMVRNGVSPCAATYNCFFKEYRGRKDADKALKFFKKM 376

Query: 181 KEDDLCVPNIHTYNILIGMFMALNRMDMVREIWNHVKGSELGLDLDSYTMLIHGLCEKQK 240
           KED LC P  HTY +LI MF+  + + +V+EIWN +  S +G DLDSYT+LIHGLCE +K
Sbjct: 377 KEDGLCEPTTHTYGVLIAMFLKADMIGVVKEIWNDMMESGVGPDLDSYTVLIHGLCESKK 436

Query: 241 WKEACQYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDEESITFGSEFQNY 300
           W+EACQYFVEMIEKG LPQKVTFETLYRGLIQSDMLRTWRRLKK+LD+ESITFGSEFQNY
Sbjct: 437 WREACQYFVEMIEKGFLPQKVTFETLYRGLIQSDMLRTWRRLKKRLDQESITFGSEFQNY 496

Query: 301 HFKPYRR 307
           H KPY+R
Sbjct: 497 HLKPYKR 503

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449457341|ref|XP_004146407.1| PREDICTED: pentatricopeptide repeat-containing protein At2g13420, mitochondrial-like [Cucumis sativus] gi|449523938|ref|XP_004168980.1| PREDICTED: pentatricopeptide repeat-containing protein At2g13420, mitochondrial-like [Cucumis sativus]

 Score =  505 bits (1300), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 231/305 (75%), Positives = 269/305 (88%)

Query: 3   NVKMYTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPNERFE 62
           +VK+YT LIYGWCKI R +MAERFL +M+ERG+EPNVVTYNVLLNGVCRRASLHP  RFE
Sbjct: 202 DVKIYTILIYGWCKIGRFEMAERFLKDMVERGIEPNVVTYNVLLNGVCRRASLHPEGRFE 261

Query: 63  KTIRNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHKPQLSLDKLNFMKEKGICPTVATY 122
           KTIR+AEKVFDEMR RGIEPDVTSFSIVLHVYSRAHKP+LSLDKL  MKE GI PTVATY
Sbjct: 262 KTIRHAEKVFDEMRKRGIEPDVTSFSIVLHVYSRAHKPELSLDKLKQMKELGISPTVATY 321

Query: 123 TSVVKCLCSCGRIEDAEELLGEMVRNGVSPSAETYNCFFKEYRGRKDANGAMKLYRQMKE 182
           TSV+KCLCSCGR+ED E L+ EMVR+G+SPS  TYNCFFKEYRGRKD  GA++LY++M+E
Sbjct: 322 TSVIKCLCSCGRLEDGENLIEEMVRSGISPSPTTYNCFFKEYRGRKDGAGALRLYKKMRE 381

Query: 183 DDLCVPNIHTYNILIGMFMALNRMDMVREIWNHVKGSELGLDLDSYTMLIHGLCEKQKWK 242
           D LC P++HTYNIL+ +F+ L++ + ++E+WN +K S +G DLDSYT +IHGLCEKQ+W 
Sbjct: 382 DCLCAPSLHTYNILLALFLNLDKKETLKELWNDMKESGVGPDLDSYTTIIHGLCEKQRWS 441

Query: 243 EACQYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDEESITFGSEFQNYHF 302
           EACQ+FVEMIE+G LPQKVTFE LYRGLIQSDMLRTWRRLKKKL+EES T+GSE +NYH 
Sbjct: 442 EACQFFVEMIERGFLPQKVTFEMLYRGLIQSDMLRTWRRLKKKLEEESKTYGSELKNYHI 501

Query: 303 KPYRR 307
           KPY R
Sbjct: 502 KPYMR 506

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356499253|ref|XP_003518456.1| PREDICTED: pentatricopeptide repeat-containing protein At2g13420, mitochondrial-like [Glycine max]

 Score =  491 bits (1265), Expect = e-136,   Method: Compositional matrix adjust.
 Identities = 226/306 (73%), Positives = 261/306 (85%)

Query: 2   PNVKMYTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPNERF 61
           P VKMYT LIYGWCKI RI  A+ FL EMI++G+EPNVVTYNVLLNGVCR+ SLHP ERF
Sbjct: 205 PTVKMYTVLIYGWCKIGRIKTAQSFLNEMIDKGIEPNVVTYNVLLNGVCRKVSLHPEERF 264

Query: 62  EKTIRNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHKPQLSLDKLNFMKEKGICPTVAT 121
           E+TIRNAE+VFD+MR  GIEPDVTSFSI+LHVYSRAHKPQL LDKL+ MKEKGICP V  
Sbjct: 265 ERTIRNAEEVFDQMRESGIEPDVTSFSILLHVYSRAHKPQLVLDKLSLMKEKGICPNVVM 324

Query: 122 YTSVVKCLCSCGRIEDAEELLGEMVRNGVSPSAETYNCFFKEYRGRKDANGAMKLYRQMK 181
           YTSV+KCL SCG +EDAE LLGEMVR+GVSP A TYNCFFKE+RGRKD   A++++++MK
Sbjct: 325 YTSVIKCLASCGWLEDAERLLGEMVRDGVSPCAATYNCFFKEFRGRKDGESALRMFKRMK 384

Query: 182 EDDLCVPNIHTYNILIGMFMALNRMDMVREIWNHVKGSELGLDLDSYTMLIHGLCEKQKW 241
           ED LC+P+ HTY ILI MF+ L+ + +V+EIW  +K +  G DLD YT+LIHGLCE+Q+W
Sbjct: 385 EDGLCMPSSHTYVILIRMFLRLDMIKVVKEIWQDMKETGAGPDLDLYTVLIHGLCERQRW 444

Query: 242 KEACQYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDEESITFGSEFQNYH 301
           +EAC YFVEMIE G LP K TFE+LYRGLIQ+DMLRTWRRLKKKLDEESITFGSEFQNY 
Sbjct: 445 REACHYFVEMIENGFLPLKGTFESLYRGLIQADMLRTWRRLKKKLDEESITFGSEFQNYQ 504

Query: 302 FKPYRR 307
            KPYRR
Sbjct: 505 LKPYRR 510

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|122236160|sp|Q0WP85.1|PP150_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At2g13420, mitochondrial; Flags: Precursor gi|110738270|dbj|BAF01064.1| hypothetical protein [Arabidopsis thaliana]

 Score =  475 bits (1223), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 225/303 (74%), Positives = 263/303 (86%), Gaps = 1/303 (0%)

Query: 5   KMYTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPNERFEKT 64
           K+YT LI GWCK+ RIDMAE+FL EMIE G+EPNVVTYNVLLNG+CR ASLHP ERFE+ 
Sbjct: 208 KVYTILIAGWCKLRRIDMAEKFLVEMIESGIEPNVVTYNVLLNGICRTASLHPEERFERN 267

Query: 65  IRNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHKPQLSLDKLNFMKEKGICPTVATYTS 124
           +RNAEKVFDEMR RGIEPDVTSFSIVLH+YSRAHK +L+LDK+  MK KGI PT+ TYTS
Sbjct: 268 VRNAEKVFDEMRQRGIEPDVTSFSIVLHMYSRAHKAELTLDKMKLMKAKGISPTIETYTS 327

Query: 125 VVKCLCSCGRIEDAEELLGEMVRNGVSPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDD 184
           VVKCLCSCGR+E+AEELL  MV +G+SPS+ TYNCFFKEY+GRKDANGAM LYR+MK + 
Sbjct: 328 VVKCLCSCGRLEEAEELLETMVESGISPSSATYNCFFKEYKGRKDANGAMNLYRKMK-NG 386

Query: 185 LCVPNIHTYNILIGMFMALNRMDMVREIWNHVKGSELGLDLDSYTMLIHGLCEKQKWKEA 244
           LC P+  TYN+L+G F+ L +M+ V+EIW+ +K SE G DLDSYT L+HGLC K+KWKEA
Sbjct: 387 LCKPSTQTYNVLLGTFINLGKMETVKEIWDDLKASETGPDLDSYTSLVHGLCSKEKWKEA 446

Query: 245 CQYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDEESITFGSEFQNYHFKP 304
           C YFVEMIE+G LPQK+TFETLY+GLIQS+ +RTWRRLKKKLDEESITFGSEFQ Y F+P
Sbjct: 447 CGYFVEMIERGFLPQKLTFETLYKGLIQSNKMRTWRRLKKKLDEESITFGSEFQRYPFEP 506

Query: 305 YRR 307
           Y+R
Sbjct: 507 YKR 509

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|242071011|ref|XP_002450782.1| hypothetical protein SORBIDRAFT_05g018050 [Sorghum bicolor] gi|241936625|gb|EES09770.1| hypothetical protein SORBIDRAFT_05g018050 [Sorghum bicolor]

 Score =  463 bits (1191), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 207/307 (67%), Positives = 254/307 (82%), Gaps = 1/307 (0%)

Query: 2   PNVKMYTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPNERF 61
           PN KMYT LIYGWCK+NR DMA +FL +M++ G+EPN+VTYN+LLNG+CR ASLHP+ RF
Sbjct: 222 PNEKMYTILIYGWCKVNRNDMARKFLKDMLDHGIEPNIVTYNILLNGICRHASLHPDYRF 281

Query: 62  EKTIRNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHKPQLSLDKLNFMKEKGICPTVAT 121
           ++T+ +AE V  EMR RGIEPDVTS+SI+LHVYSRAHKP+L +     MK++GICPTVAT
Sbjct: 282 DRTVHSAEDVLKEMRDRGIEPDVTSYSIILHVYSRAHKPELCVCMFRSMKDRGICPTVAT 341

Query: 122 YTSVVKCLCSCGRIEDAEELLGEMVRNGVSPSAETYNCFFKEYRGRKDANGAMKLYRQMK 181
           YTSV+KCL SCGR+EDAE LL EMV  GV PS  TYNCFFKEYRGR D +GA++LY +MK
Sbjct: 342 YTSVIKCLASCGRLEDAETLLDEMVAEGVCPSPATYNCFFKEYRGRNDVSGALQLYNKMK 401

Query: 182 ED-DLCVPNIHTYNILIGMFMALNRMDMVREIWNHVKGSELGLDLDSYTMLIHGLCEKQK 240
           +   L  P+IHTYNIL+GMF+ LNR   V++IW+ +  S +G DLDSYT+LIHG C  QK
Sbjct: 402 QPGSLTAPDIHTYNILLGMFIKLNRHGSVKDIWSDMCESTVGPDLDSYTLLIHGFCASQK 461

Query: 241 WKEACQYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDEESITFGSEFQNY 300
           W+EACQ+F+EMIEKG LPQK+TFETLYRGLIQ+DMLRTWRRLK+++DEE+  FG EF+ Y
Sbjct: 462 WREACQFFMEMIEKGFLPQKITFETLYRGLIQADMLRTWRRLKRRVDEEAAKFGDEFKLY 521

Query: 301 HFKPYRR 307
           H KPY+R
Sbjct: 522 HMKPYKR 528

Source: Sorghum bicolor

Species: Sorghum bicolor

Genus: Sorghum

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|125561327|gb|EAZ06775.1| hypothetical protein OsI_29018 [Oryza sativa Indica Group]

 Score =  462 bits (1188), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 205/307 (66%), Positives = 253/307 (82%), Gaps = 1/307 (0%)

Query: 2   PNVKMYTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPNERF 61
           PN KMYT LIYGWCK+NR DMA++FL +MI  G+EPN+VTYN+LLNG+CR ASLHP+ RF
Sbjct: 205 PNEKMYTVLIYGWCKVNRNDMAQKFLKDMIYHGIEPNIVTYNILLNGICRHASLHPDYRF 264

Query: 62  EKTIRNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHKPQLSLDKLNFMKEKGICPTVAT 121
           ++T+R AE +  EM  RGIEPDVTS+S++LHVYSRAHKP+L L     MKE+GICPTVAT
Sbjct: 265 DRTVRAAEDLLKEMHQRGIEPDVTSYSVILHVYSRAHKPELCLCMFRSMKERGICPTVAT 324

Query: 122 YTSVVKCLCSCGRIEDAEELLGEMVRNGVSPSAETYNCFFKEYRGRKDANGAMKLYRQMK 181
           YTSV+KCL SCGR++DAE LL EM   GV PS  TYNCFFKEYRGRKD NGA++LY +MK
Sbjct: 325 YTSVIKCLASCGRLDDAESLLDEMASEGVCPSPATYNCFFKEYRGRKDVNGALQLYNKMK 384

Query: 182 ED-DLCVPNIHTYNILIGMFMALNRMDMVREIWNHVKGSELGLDLDSYTMLIHGLCEKQK 240
                  P+IHTYNIL+GMF+ LN+ D V ++WN +  S +G DL+SYT+L+HGLC+ +K
Sbjct: 385 APGSPATPDIHTYNILLGMFIKLNQHDTVMQVWNDMCESTVGPDLNSYTLLVHGLCDNKK 444

Query: 241 WKEACQYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDEESITFGSEFQNY 300
           W+EACQ+F+EMIE+G LPQK+TFETLYRGLIQ+DMLRTWRRLKK++DEE+  FG EF+ Y
Sbjct: 445 WREACQFFMEMIERGFLPQKITFETLYRGLIQADMLRTWRRLKKRVDEEAAKFGEEFKPY 504

Query: 301 HFKPYRR 307
           H KPY+R
Sbjct: 505 HIKPYKR 511

Source: Oryza sativa Indica Group

Species: Oryza sativa

Genus: Oryza

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	307
TAIR|locus:2035206	523	AT1G52640 [Arabidopsis thalian	0.846	0.497	0.319	1.5e-37
TAIR|locus:2012883	537	AT1G20300 [Arabidopsis thalian	0.908	0.519	0.298	1.9e-35
TAIR|locus:2203916	634	AT1G62590 [Arabidopsis thalian	0.902	0.436	0.298	1.1e-33
TAIR|locus:2096099	599	AT3G62470 "AT3G62470" [Arabido	0.791	0.405	0.312	6.2e-33
TAIR|locus:2185455	598	AT5G14820 "AT5G14820" [Arabido	0.794	0.408	0.294	1e-32
TAIR|locus:2096074	599	AT3G62540 "AT3G62540" [Arabido	0.794	0.407	0.294	1e-32
TAIR|locus:2204913	491	AT1G02420 "AT1G02420" [Arabido	0.807	0.505	0.328	7.7e-32
TAIR|locus:2026207	548	AT1G62680 [Arabidopsis thalian	0.908	0.509	0.286	1e-31
TAIR|locus:2015213	629	AT1G63150 [Arabidopsis thalian	0.850	0.414	0.279	2.8e-31
TAIR|locus:2164910	747	EMB2745 "EMBRYO DEFECTIVE 2745	0.850	0.349	0.294	3.8e-31

TAIR|locus:2035206 AT1G52640 [Arabidopsis thaliana (taxid:3702)]

 Score = 403 (146.9 bits), Expect = 1.5e-37, P = 1.5e-37
 Identities = 87/272 (31%), Positives = 142/272 (52%)

Query:     1 MPNVKMYTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPNER 60
             +P+ K Y+ L+ GW +I     A +   EM+ER    +++ YN LL+ +C+         
Sbjct:   205 VPSAKTYSILVRGWARIRDASGARKVFDEMLERNCVVDLLAYNALLDALCKSGD------ 258

Query:    61 FEKTIRNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHKPQLSLDKLNFMKEKGICPTVA 120
                 +    K+F EM   G++PD  SF+I +H Y  A     +   L+ MK   + P V 
Sbjct:   259 ----VDGGYKMFQEMGNLGLKPDAYSFAIFIHAYCDAGDVHSAYKVLDRMKRYDLVPNVY 314

Query:   121 TYTSVVKCLCSCGRIEDAEELLGEMVRNGVSPSAETYNCFFKEYRGRKDANGAMKLYRQM 180
             T+  ++K LC   +++DA  LL EM++ G +P   TYN     +    + N A KL  +M
Sbjct:   315 TFNHIIKTLCKNEKVDDAYLLLDEMIQKGANPDTWTYNSIMAYHCDHCEVNRATKLLSRM 374

Query:   181 KEDDLCVPNIHTYNILIGMFMALNRMDMVREIWNHVKGSELGLDLDSYTMLIHGLCEKQ- 239
                  C+P+ HTYN+++ + + + R D   EIW  +   +    + +YT++IHGL  K+ 
Sbjct:   375 DRTK-CLPDRHTYNMVLKLLIRIGRFDRATEIWEGMSERKFYPTVATYTVMIHGLVRKKG 433

Query:   240 KWKEACQYFVEMIEKGLLPQKVTFETLYRGLI 271
             K +EAC+YF  MI++G+ P   T E L   L+
Sbjct:   434 KLEEACRYFEMMIDEGIPPYSTTVEMLRNRLV 465

GO:0005739 "mitochondrion" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2012883 AT1G20300 [Arabidopsis thaliana (taxid:3702)]

 Score = 383 (139.9 bits), Expect = 1.9e-35, P = 1.9e-35
 Identities = 87/291 (29%), Positives = 152/291 (52%)

Query:     2 PNVKMYTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPNERF 61
             P+V +YT+L+ GWC+   I  AE+   EM   G+EPNV TY+++++ +CR          
Sbjct:   253 PDVIVYTNLVRGWCRAGEISEAEKVFKEMKLAGIEPNVYTYSIVIDALCRCGQ------- 305

Query:    62 EKTIRNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHKPQLSLDKLNFMKEKGICPTVAT 121
                I  A  VF +M   G  P+  +F+ ++ V+ +A + +  L   N MK+ G  P   T
Sbjct:   306 ---ISRAHDVFADMLDSGCAPNAITFNNLMRVHVKAGRTEKVLQVYNQMKKLGCEPDTIT 362

Query:   122 YTSVVKCLCSCGRIEDAEELLGEMVRNGVSPSAETYNCFFKEYRGRKDANGAMKLYRQMK 181
             Y  +++  C    +E+A ++L  M++     +A T+N  F+    ++D NGA ++Y +M 
Sbjct:   363 YNFLIEAHCRDENLENAVKVLNTMIKKKCEVNASTFNTIFRYIEKKRDVNGAHRMYSKMM 422

Query:   182 EDDLCVPNIHTYNILIGMFMALNRMDMVREIWNHVKGSELGLDLDSYTMLIHGLCEKQKW 241
             E   C PN  TYNIL+ MF+     DMV ++   +   E+  ++++Y +L+   C    W
Sbjct:   423 EAK-CEPNTVTYNILMRMFVGSKSTDMVLKMKKEMDDKEVEPNVNTYRLLVTMFCGMGHW 481

Query:   242 KEACQYFVEMIE-KGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDEESI 291
               A + F EM+E K L P    +E +   L ++  L+    L +K+ ++ +
Sbjct:   482 NNAYKLFKEMVEEKCLTPSLSLYEMVLAQLRRAGQLKKHEELVEKMIQKGL 532

GO:0005739 "mitochondrion" evidence=ISM;IDA

TAIR|locus:2203916 AT1G62590 [Arabidopsis thaliana (taxid:3702)]

 Score = 372 (136.0 bits), Expect = 1.1e-33, P = 1.1e-33
 Identities = 86/288 (29%), Positives = 149/288 (51%)

Query:     2 PNVKMYTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPNERF 61
             PNV  Y+SLI   C   R   A + L +MIE+ + PN+VT+N L++   +        +F
Sbjct:   293 PNVVTYSSLISCLCSYGRWSDASQLLSDMIEKKINPNLVTFNALIDAFVKEG------KF 346

Query:    62 EKTIRNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHKPQLSLDKLNFMKEKGICPTVAT 121
              +    AEK++D+M  R I+PD+ +++ +++ +    +   +     FM  K   P V T
Sbjct:   347 VE----AEKLYDDMIKRSIDPDIFTYNSLVNGFCMHDRLDKAKQMFEFMVSKDCFPDVVT 402

Query:   122 YTSVVKCLCSCGRIEDAEELLGEMVRNGVSPSAETYNCFFKEYRGRKDANGAMKLYRQMK 181
             Y +++K  C   R+ED  EL  EM   G+     TY    +      D + A K+++QM 
Sbjct:   403 YNTLIKGFCKSKRVEDGTELFREMSHRGLVGDTVTYTTLIQGLFHDGDCDNAQKVFKQMV 462

Query:   182 EDDLCVPNIHTYNILIGMFMALNRMDMVREIWNHVKGSELGLDLDSYTMLIHGLCEKQKW 241
              D +  P+I TY+IL+       +++   E++++++ SE+ LD+  YT +I G+C+  K 
Sbjct:   463 SDGV-PPDIMTYSILLDGLCNNGKLEKALEVFDYMQKSEIKLDIYIYTTMIEGMCKAGKV 521

Query:   242 KEACQYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDEE 289
              +    F  +  KG+ P  VT+ T+  GL    +L+    L KK+ E+
Sbjct:   522 DDGWDLFCSLSLKGVKPNVVTYNTMISGLCSKRLLQEAYALLKKMKED 569

GO:0005739 "mitochondrion" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2096099 AT3G62470 "AT3G62470" [Arabidopsis thaliana (taxid:3702)]

 Score = 364 (133.2 bits), Expect = 6.2e-33, P = 6.2e-33
 Identities = 80/256 (31%), Positives = 147/256 (57%)

Query:     2 PNVKMYTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPNERF 61
             PN+  YT L+ GWC++  +  A R   +MI++G++P++V +NV+L G+ R          
Sbjct:   296 PNMMTYTVLLNGWCRVRNLIEAARIWNDMIDQGLKPDIVAHNVMLEGLLRSR-------- 347

Query:    62 EKTIRNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHKPQLSLDKLNFMKEKGICPTVAT 121
             +K+  +A K+F  M+ +G  P+V S++I++  + +    + +++  + M + G+ P  A 
Sbjct:   348 KKS--DAIKLFHVMKSKGPCPNVRSYTIMIRDFCKQSSMETAIEYFDDMVDSGLQPDAAV 405

Query:   122 YTSVVKCLCSCGRIEDAEELLGEMVRNGVSPSAETYNCFFKEYRGRKDANGAMKLYRQMK 181
             YT ++    +  +++   ELL EM   G  P  +TYN   K    +K    A ++Y +M 
Sbjct:   406 YTCLITGFGTQKKLDTVYELLKEMQEKGHPPDGKTYNALIKLMANQKMPEHATRIYNKMI 465

Query:   182 EDDLCVPNIHTYNILI-GMFMALNRMDMVREIWNHVKGSELGLDLDSYTMLIHGLCEKQK 240
             ++++  P+IHT+N+++   FMA N  +M R +W  +    +  D +SYT+LI GL  + K
Sbjct:   466 QNEI-EPSIHTFNMIMKSYFMARN-YEMGRAVWEEMIKKGICPDDNSYTVLIRGLIGEGK 523

Query:   241 WKEACQYFVEMIEKGL 256
              +EAC+Y  EM++KG+
Sbjct:   524 SREACRYLEEMLDKGM 539

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2185455 AT5G14820 "AT5G14820" [Arabidopsis thaliana (taxid:3702)]

 Score = 362 (132.5 bits), Expect = 1.0e-32, P = 1.0e-32
 Identities = 75/255 (29%), Positives = 143/255 (56%)

Query:     2 PNVKMYTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPNERF 61
             PN+  YT L+ GWC++  +  A R   +MI+ G++P++V +NV+L G+ R          
Sbjct:   295 PNMMTYTVLLNGWCRVRNLIEAARIWNDMIDHGLKPDIVAHNVMLEGLLRS--------M 346

Query:    62 EKTIRNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHKPQLSLDKLNFMKEKGICPTVAT 121
             +K+  +A K+F  M+ +G  P+V S++I++  + +    + +++  + M + G+ P  A 
Sbjct:   347 KKS--DAIKLFHVMKSKGPCPNVRSYTIMIRDFCKQSSMETAIEYFDDMVDSGLQPDAAV 404

Query:   122 YTSVVKCLCSCGRIEDAEELLGEMVRNGVSPSAETYNCFFKEYRGRKDANGAMKLYRQMK 181
             YT ++    +  +++   ELL EM   G  P  +TYN   K    +K      ++Y +M 
Sbjct:   405 YTCLITGFGTQKKLDTVYELLKEMQEKGHPPDGKTYNALIKLMANQKMPEHGTRIYNKMI 464

Query:   182 EDDLCVPNIHTYNILIGMFMALNRMDMVREIWNHVKGSELGLDLDSYTMLIHGLCEKQKW 241
             ++++  P+IHT+N+++  +      +M R +W+ +    +  D +SYT+LI GL  + K 
Sbjct:   465 QNEI-EPSIHTFNMIMKSYFVARNYEMGRAVWDEMIKKGICPDDNSYTVLIRGLISEGKS 523

Query:   242 KEACQYFVEMIEKGL 256
             +EAC+Y  EM++KG+
Sbjct:   524 REACRYLEEMLDKGM 538

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2096074 AT3G62540 "AT3G62540" [Arabidopsis thaliana (taxid:3702)]

 Score = 362 (132.5 bits), Expect = 1.0e-32, P = 1.0e-32
 Identities = 75/255 (29%), Positives = 143/255 (56%)

Query:     2 PNVKMYTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPNERF 61
             PN+  YT L+ GWC++  +  A R   +MI+ G++P++V +NV+L G+ R          
Sbjct:   296 PNMMTYTVLLNGWCRVRNLIEAARIWNDMIDHGLKPDIVAHNVMLEGLLRS--------M 347

Query:    62 EKTIRNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHKPQLSLDKLNFMKEKGICPTVAT 121
             +K+  +A K+F  M+ +G  P+V S++I++  + +    + +++  + M + G+ P  A 
Sbjct:   348 KKS--DAIKLFHVMKSKGPCPNVRSYTIMIRDFCKQSSMETAIEYFDDMVDSGLQPDAAV 405

Query:   122 YTSVVKCLCSCGRIEDAEELLGEMVRNGVSPSAETYNCFFKEYRGRKDANGAMKLYRQMK 181
             YT ++    +  +++   ELL EM   G  P  +TYN   K    +K      ++Y +M 
Sbjct:   406 YTCLITGFGTQKKLDTVYELLKEMQEKGHPPDGKTYNALIKLMANQKMPEHGTRIYNKMI 465

Query:   182 EDDLCVPNIHTYNILIGMFMALNRMDMVREIWNHVKGSELGLDLDSYTMLIHGLCEKQKW 241
             ++++  P+IHT+N+++  +      +M R +W+ +    +  D +SYT+LI GL  + K 
Sbjct:   466 QNEI-EPSIHTFNMIMKSYFVARNYEMGRAVWDEMIKKGICPDDNSYTVLIRGLISEGKS 524

Query:   242 KEACQYFVEMIEKGL 256
             +EAC+Y  EM++KG+
Sbjct:   525 REACRYLEEMLDKGM 539

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2204913 AT1G02420 "AT1G02420" [Arabidopsis thaliana (taxid:3702)]

 Score = 349 (127.9 bits), Expect = 7.7e-32, P = 7.7e-32
 Identities = 88/268 (32%), Positives = 143/268 (53%)

Query:     2 PNVKMYTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPNERF 61
             P+++ +  L+ GW      + AE F  EM  +G++P+VVTYN L++  C+          
Sbjct:   212 PDLQTFNILLSGW---KSSEEAEAFFEEMKGKGLKPDVVTYNSLIDVYCK---------- 258

Query:    62 EKTIRNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHKPQLSLDKLNFMKEKGICPTVAT 121
             ++ I  A K+ D+MR     PDV +++ V+       +P  + + L  MKE G  P VA 
Sbjct:   259 DREIEKAYKLIDKMREEEETPDVITYTTVIGGLGLIGQPDKAREVLKEMKEYGCYPDVAA 318

Query:   122 YTSVVKCLCSCGRIEDAEELLGEMVRNGVSPSAETYNCFFKEYRGRKDANGAMKLYRQMK 181
             Y + ++  C   R+ DA++L+ EMV+ G+SP+A TYN FF+      D   + +LY +M 
Sbjct:   319 YNAAIRNFCIARRLGDADKLVDEMVKKGLSPNATTYNLFFRVLSLANDLGRSWELYVRML 378

Query:   182 EDDLCVPNIHTYNILIGMFMALNRMDMVREIWNH--VKG-SELGLDLDSYTMLIHGLCEK 238
              ++ C+PN  +   LI MF    ++DM   +W    VKG     L  D   +L+  LC+ 
Sbjct:   379 GNE-CLPNTQSCMFLIKMFKRHEKVDMAMRLWEDMVVKGFGSYSLVSD---VLLDLLCDL 434

Query:   239 QKWKEACQYFVEMIEKGLLPQKVTFETL 266
              K +EA +  +EM+EKG  P  V+F+ +
Sbjct:   435 AKVEEAEKCLLEMVEKGHRPSNVSFKRI 462

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2026207 AT1G62680 [Arabidopsis thaliana (taxid:3702)]

 Score = 351 (128.6 bits), Expect = 1.0e-31, P = 1.0e-31
 Identities = 83/290 (28%), Positives = 145/290 (50%)

Query:     2 PNVKMYTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPNERF 61
             PNV  YT+L+ G C  +R   A R L +MI++ + PNV+TY+ LL+   +          
Sbjct:   223 PNVVTYTALVNGLCNSSRWSDAARLLSDMIKKKITPNVITYSALLDAFVKNGK------- 275

Query:    62 EKTIRNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHKPQLSLDKLNFMKEKGICPTVAT 121
                +  A+++F+EM    I+PD+ ++S +++      +   +    + M  KG    V +
Sbjct:   276 ---VLEAKELFEEMVRMSIDPDIVTYSSLINGLCLHDRIDEANQMFDLMVSKGCLADVVS 332

Query:   122 YTSVVKCLCSCGRIEDAEELLGEMVRNGVSPSAETYNCFFKEYRGRKDANGAMKLYRQMK 181
             Y +++   C   R+ED  +L  EM + G+  +  TYN   + +    D + A + + QM 
Sbjct:   333 YNTLINGFCKAKRVEDGMKLFREMSQRGLVSNTVTYNTLIQGFFQAGDVDKAQEFFSQMD 392

Query:   182 EDDLCVPNIHTYNILIGMFMALNRMDMVREIWNHVKGSELGLDLDSYTMLIHGLCEKQKW 241
                +  P+I TYNIL+G       ++    I+  ++  E+ LD+ +YT +I G+C+  K 
Sbjct:   393 FFGIS-PDIWTYNILLGGLCDNGELEKALVIFEDMQKREMDLDIVTYTTVIRGMCKTGKV 451

Query:   242 KEACQYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDEESI 291
             +EA   F  +  KGL P  VT+ T+  GL    +L     L  K+ +E +
Sbjct:   452 EEAWSLFCSLSLKGLKPDIVTYTTMMSGLCTKGLLHEVEALYTKMKQEGL 501

GO:0005739 "mitochondrion" evidence=ISM

TAIR|locus:2015213 AT1G63150 [Arabidopsis thaliana (taxid:3702)]

 Score = 350 (128.3 bits), Expect = 2.8e-31, P = 2.8e-31
 Identities = 76/272 (27%), Positives = 145/272 (53%)

Query:     2 PNVKMYTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPNERF 61
             P+   +T+LI+G    N+   A   + +M++RG +P++VTY  ++NG+C+R         
Sbjct:   186 PDTFTFTTLIHGLFLHNKASEAVALVDQMVQRGCQPDLVTYGTVVNGLCKRGD------- 238

Query:    62 EKTIRNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHKPQLSLDKLNFMKEKGICPTVAT 121
                I  A  + ++M    I+ +V  F+ ++    +    ++++D    M+ KGI P V T
Sbjct:   239 ---IDLALNLLNKMEAARIKANVVIFNTIIDSLCKYRHVEVAVDLFTEMETKGIRPNVVT 295

Query:   122 YTSVVKCLCSCGRIEDAEELLGEMVRNGVSPSAETYNCFFKEYRGRKDANGAMKLYRQMK 181
             Y S++ CLC+ GR  DA  LL  M+   ++P+  T+N     +        A KL+ +M 
Sbjct:   296 YNSLINCLCNYGRWSDASRLLSNMLEKKINPNVVTFNALIDAFFKEGKLVEAEKLHEEMI 355

Query:   182 EDDLCVPNIHTYNILIGMFMALNRMDMVREIWNHVKGSELGLDLDSYTMLIHGLCEKQKW 241
             +  +  P+  TYN+LI  F   NR+D  ++++  +   +   ++ +Y  LI+G C+ ++ 
Sbjct:   356 QRSID-PDTITYNLLINGFCMHNRLDEAKQMFKFMVSKDCLPNIQTYNTLINGFCKCKRV 414

Query:   242 KEACQYFVEMIEKGLLPQKVTFETLYRGLIQS 273
             ++  + F EM ++GL+   VT+ T+ +G  Q+
Sbjct:   415 EDGVELFREMSQRGLVGNTVTYTTIIQGFFQA 446

GO:0005739 "mitochondrion" evidence=ISM

TAIR|locus:2164910 EMB2745 "EMBRYO DEFECTIVE 2745" [Arabidopsis thaliana (taxid:3702)]

 Score = 351 (128.6 bits), Expect = 3.8e-31, P = 3.8e-31
 Identities = 80/272 (29%), Positives = 137/272 (50%)

Query:     1 MPNVKMYTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPNER 60
             +PNV  Y +LI G+CK+ +ID   + L  M  +G+EPN+++YNV++NG+CR         
Sbjct:   237 LPNVVTYNTLIDGYCKLRKIDDGFKLLRSMALKGLEPNLISYNVVINGLCR--------- 287

Query:    61 FEKTIRNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHKPQLSLDKLNFMKEKGICPTVA 120
              E  ++    V  EM  RG   D  +++ ++  Y +      +L     M   G+ P+V 
Sbjct:   288 -EGRMKEVSFVLTEMNRRGYSLDEVTYNTLIKGYCKEGNFHQALVMHAEMLRHGLTPSVI 346

Query:   121 TYTSVVKCLCSCGRIEDAEELLGEMVRNGVSPSAETYNCFFKEYRGRKDANGAMKLYRQM 180
             TYTS++  +C  G +  A E L +M   G+ P+  TY      +  +   N A ++ R+M
Sbjct:   347 TYTSLIHSMCKAGNMNRAMEFLDQMRVRGLCPNERTYTTLVDGFSQKGYMNEAYRVLREM 406

Query:   181 KEDDLCVPNIHTYNILIGMFMALNRMDMVREIWNHVKGSELGLDLDSYTMLIHGLCEKQK 240
              ++    P++ TYN LI       +M+    +   +K   L  D+ SY+ ++ G C    
Sbjct:   407 NDNGFS-PSVVTYNALINGHCVTGKMEDAIAVLEDMKEKGLSPDVVSYSTVLSGFCRSYD 465

Query:   241 WKEACQYFVEMIEKGLLPQKVTFETLYRGLIQ 272
               EA +   EM+EKG+ P  +T+ +L +G  +
Sbjct:   466 VDEALRVKREMVEKGIKPDTITYSSLIQGFCE 497

GO:0005739 "mitochondrion" evidence=ISM;IDA

GO:0009793 "embryo development ending in seed dormancy" evidence=NAS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q0WP85	PP150_ARATH	No assigned EC number	0.7425	0.9837	0.5933	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	307
PLN03218	1060	PLN03218, PLN03218, maturation of RBCL 1; Provisio	1e-16
pfam13041	50	pfam13041, PPR_2, PPR repeat family	6e-16
PLN03218	1060	PLN03218, PLN03218, maturation of RBCL 1; Provisio	7e-15
pfam13041	50	pfam13041, PPR_2, PPR repeat family	9e-12
pfam13041	50	pfam13041, PPR_2, PPR repeat family	7e-11
pfam12854	34	pfam12854, PPR_1, PPR repeat	3e-08
pfam13041	50	pfam13041, PPR_2, PPR repeat family	9e-08
pfam13041	50	pfam13041, PPR_2, PPR repeat family	1e-07
pfam13041	50	pfam13041, PPR_2, PPR repeat family	1e-07
pfam12854	34	pfam12854, PPR_1, PPR repeat	2e-07
TIGR00756	35	TIGR00756, PPR, pentatricopeptide repeat domain (P	3e-06
PLN03218	1060	PLN03218, PLN03218, maturation of RBCL 1; Provisio	1e-05
pfam12854	34	pfam12854, PPR_1, PPR repeat	1e-05
TIGR00756	35	TIGR00756, PPR, pentatricopeptide repeat domain (P	1e-05
PLN03218	1060	PLN03218, PLN03218, maturation of RBCL 1; Provisio	3e-05
pfam01535	31	pfam01535, PPR, PPR repeat	3e-05
pfam13812	34	pfam13812, PPR_3, Pentatricopeptide repeat domain	5e-05
PLN03077	857	PLN03077, PLN03077, Protein ECB2; Provisional	6e-05
TIGR00756	35	TIGR00756, PPR, pentatricopeptide repeat domain (P	1e-04
TIGR00756	35	TIGR00756, PPR, pentatricopeptide repeat domain (P	2e-04
pfam13812	34	pfam13812, PPR_3, Pentatricopeptide repeat domain	2e-04
PLN03077	857	PLN03077, PLN03077, Protein ECB2; Provisional	4e-04
pfam01535	31	pfam01535, PPR, PPR repeat	5e-04
pfam01535	31	pfam01535, PPR, PPR repeat	0.001
PLN03218	1060	PLN03218, PLN03218, maturation of RBCL 1; Provisio	0.002

>gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional

 Score = 79.9 bits (197), Expect = 1e-16
 Identities = 63/280 (22%), Positives = 117/280 (41%), Gaps = 19/280 (6%)

Query: 2   PNVKMYTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPNERF 61
            + K+YT+LI    K  ++D       EM+  GVE NV T+  L++G C RA        
Sbjct: 470 ADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDG-CARAGQVA---- 524

Query: 62  EKTIRNAEKVFDE---MRVRGIEPDVTSFSIVLHVYSRAHKPQLSLDKLNFMK--EKGIC 116
                   K F     MR + ++PD   F+ ++    ++     + D L  MK     I 
Sbjct: 525 --------KAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPID 576

Query: 117 PTVATYTSVVKCLCSCGRIEDAEELLGEMVRNGVSPSAETYNCFFKEYRGRKDANGAMKL 176
           P   T  +++K   + G+++ A+E+   +    +  + E Y         + D + A+ +
Sbjct: 577 PDHITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSI 636

Query: 177 YRQMKEDDLCVPNIHTYNILIGMFMALNRMDMVREIWNHVKGSELGLDLDSYTMLIHGLC 236
           Y  MK+  +  P+   ++ L+ +      +D   EI    +   + L   SY+ L+    
Sbjct: 637 YDDMKKKGV-KPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACS 695

Query: 237 EKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQSDML 276
             + WK+A + + ++    L P   T   L   L + + L
Sbjct: 696 NAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQL 735

Length = 1060

>gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family

 Score = 70.1 bits (173), Expect = 6e-16
 Identities = 21/50 (42%), Positives = 37/50 (74%)

Query: 2  PNVKMYTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCR 51
          P+V  Y +LI G+CK  +++ A +   EM +RG++PNV TY++L++G+C+
Sbjct: 1  PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50

This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50

>gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional

 Score = 74.9 bits (184), Expect = 7e-15
 Identities = 65/269 (24%), Positives = 114/269 (42%), Gaps = 32/269 (11%)

Query: 3   NVK----MYTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPN 58
           N+K    +YT  +    +    D A     +M ++GV+P+ V ++ L++      + H  
Sbjct: 609 NIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVD-----VAGH-- 661

Query: 59  ERFEKTIRNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHKPQLSLDKLNFMKEKGICPT 118
                 +  A ++  + R +GI+    S+S ++   S A   + +L+    +K   + PT
Sbjct: 662 ---AGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPT 718

Query: 119 VATYTSVVKCLCSCGRIEDAEELLGEMVRNGVSPSAETYNCFFKEYRGRKDANGAMKLYR 178
           V+T  +++  LC   ++  A E+L EM R G+ P+  TY+        + DA+  + L  
Sbjct: 719 VSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVASERKDDADVGLDLLS 778

Query: 179 QMKEDDLCVPNIHTYNILIGMFMALNRMDMVREIWNHVKGSELGLDLDSYTMLIHGLCEK 238
           Q KED +  PN+     + G+ +        R         E  +  DS    I     +
Sbjct: 779 QAKEDGI-KPNLVMCRCITGLCL--------RRFEKACALGEPVVSFDSGRPQI-----E 824

Query: 239 QKWKE-ACQYFVEMIEKGLLPQKVTFETL 266
            KW   A   + E I  G LP   T E L
Sbjct: 825 NKWTSWALMVYRETISAGTLP---TMEVL 850

Length = 1060

>gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family

 Score = 58.6 bits (143), Expect = 9e-12
 Identities = 22/60 (36%), Positives = 38/60 (63%), Gaps = 10/60 (16%)

Query: 37 PNVVTYNVLLNGVCRRASLHPNERFEKTIRNAEKVFDEMRVRGIEPDVTSFSIVLHVYSR 96
          P+VVTYN L++G C+        + E+    A K+F+EM+ RGI+P+V ++SI++    +
Sbjct: 1  PDVVTYNTLIDGYCK------KGKVEE----ALKLFNEMKKRGIKPNVYTYSILIDGLCK 50

This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50

>gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family

 Score = 56.3 bits (137), Expect = 7e-11
 Identities = 15/48 (31%), Positives = 26/48 (54%)

Query: 117 PTVATYTSVVKCLCSCGRIEDAEELLGEMVRNGVSPSAETYNCFFKEY 164
           P V TY +++   C  G++E+A +L  EM + G+ P+  TY+      
Sbjct: 1   PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGL 48

This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50

>gnl|CDD|205109 pfam12854, PPR_1, PPR repeat

 Score = 48.5 bits (117), Expect = 3e-08
 Identities = 16/34 (47%), Positives = 23/34 (67%)

Query: 113 KGICPTVATYTSVVKCLCSCGRIEDAEELLGEMV 146
           KG+ P V TY +++  LC  GR+++A ELL EM 
Sbjct: 1   KGLKPDVVTYNTLIDGLCRAGRVDEAVELLDEME 34

This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34

>gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family

 Score = 47.4 bits (114), Expect = 9e-08
 Identities = 14/49 (28%), Positives = 30/49 (61%)

Query: 188 PNIHTYNILIGMFMALNRMDMVREIWNHVKGSELGLDLDSYTMLIHGLC 236
           P++ TYN LI  +    +++   +++N +K   +  ++ +Y++LI GLC
Sbjct: 1   PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLC 49

This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50

>gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family

 Score = 47.4 bits (114), Expect = 1e-07
 Identities = 17/49 (34%), Positives = 25/49 (51%), Gaps = 1/49 (2%)

Query: 152 PSAETYNCFFKEYRGRKDANGAMKLYRQMKEDDLCVPNIHTYNILIGMF 200
           P   TYN     Y  +     A+KL+ +MK+     PN++TY+ILI   
Sbjct: 1   PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRG-IKPNVYTYSILIDGL 48

This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50

>gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family

 Score = 47.0 bits (113), Expect = 1e-07
 Identities = 18/44 (40%), Positives = 26/44 (59%)

Query: 227 SYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGL 270
           +Y  LI G C+K K +EA + F EM ++G+ P   T+  L  GL
Sbjct: 5   TYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGL 48

This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50

>gnl|CDD|205109 pfam12854, PPR_1, PPR repeat

 Score = 45.8 bits (110), Expect = 2e-07
 Identities = 16/44 (36%), Positives = 27/44 (61%), Gaps = 10/44 (22%)

Query: 33 RGVEPNVVTYNVLLNGVCRRASLHPNERFEKTIRNAEKVFDEMR 76
          +G++P+VVTYN L++G+CR        R ++    A ++ DEM 
Sbjct: 1  KGLKPDVVTYNTLIDGLCR------AGRVDE----AVELLDEME 34

This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34

>gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif)

 Score = 43.2 bits (103), Expect = 3e-06
 Identities = 14/34 (41%), Positives = 20/34 (58%)

Query: 121 TYTSVVKCLCSCGRIEDAEELLGEMVRNGVSPSA 154
           TY +++  LC  GR+E+A EL  EM   G+ P  
Sbjct: 2   TYNTLIDGLCKAGRVEEALELFKEMKERGIEPDV 35

This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35

>gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional

 Score = 46.8 bits (111), Expect = 1e-05
 Identities = 54/265 (20%), Positives = 111/265 (41%), Gaps = 18/265 (6%)

Query: 5   KMYTSLIYGWCKINR-IDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPNERFEK 63
           K+Y +  +  CK  R +  A RF   +      P + T+N+L++ VC  +         +
Sbjct: 406 KIYHAKFFKACKKQRAVKEAFRFAKLIRN----PTLSTFNMLMS-VCASS---------Q 451

Query: 64  TIRNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHKPQLSLDKLNFMKEKGICPTVATYT 123
            I  A +V   ++  G++ D   ++ ++   +++ K     +  + M   G+   V T+ 
Sbjct: 452 DIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFG 511

Query: 124 SVVKCLCSCGRIEDAEELLGEMVRNGVSPSAETYNCFFKEYRGRKDA-NGAMKLYRQMK- 181
           +++      G++  A    G M    V P    +N       G+  A + A  +  +MK 
Sbjct: 512 ALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISAC-GQSGAVDRAFDVLAEMKA 570

Query: 182 EDDLCVPNIHTYNILIGMFMALNRMDMVREIWNHVKGSELGLDLDSYTMLIHGLCEKQKW 241
           E     P+  T   L+       ++D  +E++  +    +    + YT+ ++   +K  W
Sbjct: 571 ETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDW 630

Query: 242 KEACQYFVEMIEKGLLPQKVTFETL 266
             A   + +M +KG+ P +V F  L
Sbjct: 631 DFALSIYDDMKKKGVKPDEVFFSAL 655

Length = 1060

>gnl|CDD|205109 pfam12854, PPR_1, PPR repeat

 Score = 41.2 bits (98), Expect = 1e-05
 Identities = 13/29 (44%), Positives = 17/29 (58%)

Query: 2  PNVKMYTSLIYGWCKINRIDMAERFLGEM 30
          P+V  Y +LI G C+  R+D A   L EM
Sbjct: 5  PDVVTYNTLIDGLCRAGRVDEAVELLDEM 33

This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34

>gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif)

 Score = 41.3 bits (98), Expect = 1e-05
 Identities = 16/34 (47%), Positives = 21/34 (61%)

Query: 6  MYTSLIYGWCKINRIDMAERFLGEMIERGVEPNV 39
           Y +LI G CK  R++ A     EM ERG+EP+V
Sbjct: 2  TYNTLIDGLCKAGRVEEALELFKEMKERGIEPDV 35

This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35

>gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional

 Score = 45.3 bits (107), Expect = 3e-05
 Identities = 24/85 (28%), Positives = 39/85 (45%), Gaps = 10/85 (11%)

Query: 1   MPNVKMYTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPNER 60
            P V    +LI   C+ N++  A   L EM   G+ PN +TY++LL      AS    ER
Sbjct: 716 RPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILL-----VAS----ER 766

Query: 61  FEKTIRNAEKVFDEMRVRGIEPDVT 85
            +        +  + +  GI+P++ 
Sbjct: 767 -KDDADVGLDLLSQAKEDGIKPNLV 790

Length = 1060

>gnl|CDD|144943 pfam01535, PPR, PPR repeat

 Score = 39.7 bits (94), Expect = 3e-05
 Identities = 13/30 (43%), Positives = 18/30 (60%)

Query: 121 TYTSVVKCLCSCGRIEDAEELLGEMVRNGV 150
           TY S++   C  G++E+A EL  EM   GV
Sbjct: 2   TYNSLISGYCKAGKLEEALELFKEMKEKGV 31

This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31

>gnl|CDD|205985 pfam13812, PPR_3, Pentatricopeptide repeat domain

 Score = 39.5 bits (93), Expect = 5e-05
 Identities = 10/34 (29%), Positives = 18/34 (52%)

Query: 119 VATYTSVVKCLCSCGRIEDAEELLGEMVRNGVSP 152
           + TY +++  L   G  + A  +L EM  +G+ P
Sbjct: 1   LETYNALLLALAKAGDPDLALAVLEEMKASGLKP 34

This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34

>gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional

 Score = 44.5 bits (105), Expect = 6e-05
 Identities = 68/360 (18%), Positives = 116/360 (32%), Gaps = 92/360 (25%)

Query: 2   PNVKMYTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPNERF 61
           P++   TS+I     +    +     G +++ G   +V   N L+       S       
Sbjct: 286 PDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSW------ 339

Query: 62  EKTIRNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHKPQLSLDKLNFMKEKGICP---T 118
                 AEKVF  M  +    D  S++ ++  Y +   P  +L+    M++  + P   T
Sbjct: 340 ----GEAEKVFSRMETK----DAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEIT 391

Query: 119 VATYTSVVKCLCS--------------------------------CGRIEDAEELLGEMV 146
           +A+  S   CL                                  C  I+ A E+   + 
Sbjct: 392 IASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIP 451

Query: 147 RNGVSPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDD--------------------LC 186
              V              R  +    A+  +RQM                        +C
Sbjct: 452 EKDVISWTSIIAGLRLNNRCFE----ALIFFRQMLLTLKPNSVTLIAALSACARIGALMC 507

Query: 187 VPNIHTY-------------NILIGMFMALNRMDMVREIWNHVKGSELGLDLDSYTMLIH 233
              IH +             N L+ +++   RM      WN     E   D+ S+ +L+ 
Sbjct: 508 GKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRM---NYAWNQFNSHEK--DVVSWNILLT 562

Query: 234 GLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRT-WRRLKKKLDEESIT 292
           G     K   A + F  M+E G+ P +VTF +L     +S M+           ++ SIT
Sbjct: 563 GYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSIT 622

Length = 857

>gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif)

 Score = 38.2 bits (90), Expect = 1e-04
 Identities = 14/32 (43%), Positives = 21/32 (65%)

Query: 227 SYTMLIHGLCEKQKWKEACQYFVEMIEKGLLP 258
           +Y  LI GLC+  + +EA + F EM E+G+ P
Sbjct: 2   TYNTLIDGLCKAGRVEEALELFKEMKERGIEP 33

This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35

>gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif)

 Score = 37.8 bits (89), Expect = 2e-04
 Identities = 20/45 (44%), Positives = 28/45 (62%), Gaps = 10/45 (22%)

Query: 40 VTYNVLLNGVCRRASLHPNERFEKTIRNAEKVFDEMRVRGIEPDV 84
          VTYN L++G+C+        R E+    A ++F EM+ RGIEPDV
Sbjct: 1  VTYNTLIDGLCK------AGRVEE----ALELFKEMKERGIEPDV 35

This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35

>gnl|CDD|205985 pfam13812, PPR_3, Pentatricopeptide repeat domain

 Score = 37.5 bits (88), Expect = 2e-04
 Identities = 10/34 (29%), Positives = 17/34 (50%)

Query: 4  VKMYTSLIYGWCKINRIDMAERFLGEMIERGVEP 37
          ++ Y +L+    K    D+A   L EM   G++P
Sbjct: 1  LETYNALLLALAKAGDPDLALAVLEEMKASGLKP 34

This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34

>gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional

 Score = 41.8 bits (98), Expect = 4e-04
 Identities = 30/111 (27%), Positives = 50/111 (45%), Gaps = 11/111 (9%)

Query: 36  EPNVVTYNVLLNGVCRRASLHPNERFEKTIRNAEKVFDEMRVRGIEPDVTSFSIVLHVYS 95
           E +VV++N+LL G                   A ++F+ M   G+ PD  +F  +L   S
Sbjct: 551 EKDVVSWNILLTGYVAHGKGS----------MAVELFNRMVESGVNPDEVTFISLLCACS 600

Query: 96  RAHKPQLSLDKLNFMKEK-GICPTVATYTSVVKCLCSCGRIEDAEELLGEM 145
           R+      L+  + M+EK  I P +  Y  VV  L   G++ +A   + +M
Sbjct: 601 RSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKM 651

Length = 857

>gnl|CDD|144943 pfam01535, PPR, PPR repeat

 Score = 36.7 bits (86), Expect = 5e-04
 Identities = 13/30 (43%), Positives = 18/30 (60%)

Query: 6  MYTSLIYGWCKINRIDMAERFLGEMIERGV 35
           Y SLI G+CK  +++ A     EM E+GV
Sbjct: 2  TYNSLISGYCKAGKLEEALELFKEMKEKGV 31

This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31

>gnl|CDD|144943 pfam01535, PPR, PPR repeat

 Score = 35.5 bits (83), Expect = 0.001
 Identities = 14/30 (46%), Positives = 19/30 (63%)

Query: 227 SYTMLIHGLCEKQKWKEACQYFVEMIEKGL 256
           +Y  LI G C+  K +EA + F EM EKG+
Sbjct: 2   TYNSLISGYCKAGKLEEALELFKEMKEKGV 31

This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31

>gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional

 Score = 39.9 bits (93), Expect = 0.002
 Identities = 36/152 (23%), Positives = 64/152 (42%), Gaps = 6/152 (3%)

Query: 119 VATYTSVVKCLCSCGRIEDAEELLGEMVRNGVSPSAETYNC-FFKEYRGRKDANGAMKLY 177
              Y      L   GRI+D  +LL +M + G+    + Y+  FFK  + ++    A +  
Sbjct: 370 SPEYIDAYNRLLRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFA 429

Query: 178 RQMKEDDLCVPNIHTYNILIGMFMALNRMDMVREIWNHVKGSELGLDLDSYTMLIHGLCE 237
           + ++      P + T+N+L+ +  +   +D    +   V+ + L  D   YT LI    +
Sbjct: 430 KLIRN-----PTLSTFNMLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAK 484

Query: 238 KQKWKEACQYFVEMIEKGLLPQKVTFETLYRG 269
             K     + F EM+  G+     TF  L  G
Sbjct: 485 SGKVDAMFEVFHEMVNAGVEANVHTFGALIDG 516

Length = 1060

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	307
PLN03218	1060	maturation of RBCL 1; Provisional	100.0
PLN03218	1060	maturation of RBCL 1; Provisional	100.0
PLN03081	697	pentatricopeptide (PPR) repeat-containing protein;	100.0
PLN03077	857	Protein ECB2; Provisional	100.0
PLN03081	697	pentatricopeptide (PPR) repeat-containing protein;	100.0
PLN03077	857	Protein ECB2; Provisional	100.0
PRK11788	389	tetratricopeptide repeat protein; Provisional	99.92
PRK11788	389	tetratricopeptide repeat protein; Provisional	99.91
TIGR02917	899	PEP_TPR_lipo putative PEP-CTERM system TPR-repeat	99.88
TIGR02917	899	PEP_TPR_lipo putative PEP-CTERM system TPR-repeat	99.87
PRK15174	656	Vi polysaccharide export protein VexE; Provisional	99.82
PRK15174	656	Vi polysaccharide export protein VexE; Provisional	99.81
KOG4422	625	consensus Uncharacterized conserved protein [Funct	99.81
PF13429	280	TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2	99.78
TIGR00990	615	3a0801s09 mitochondrial precursor proteins import	99.78
TIGR00990	615	3a0801s09 mitochondrial precursor proteins import	99.76
KOG4626	966	consensus O-linked N-acetylglucosamine transferase	99.73
KOG4422	625	consensus Uncharacterized conserved protein [Funct	99.72
PRK10747	398	putative protoheme IX biogenesis protein; Provisio	99.71
KOG4626	966	consensus O-linked N-acetylglucosamine transferase	99.7
KOG1126	638	consensus DNA-binding cell division cycle control	99.69
PRK09782	987	bacteriophage N4 receptor, outer membrane subunit;	99.69
PRK11447	1157	cellulose synthase subunit BcsC; Provisional	99.68
TIGR00540	409	hemY_coli hemY protein. This is an uncharacterized	99.68
PF13429	280	TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2	99.66
PRK11447	1157	cellulose synthase subunit BcsC; Provisional	99.66
TIGR02521	234	type_IV_pilW type IV pilus biogenesis/stability pr	99.62
PRK09782	987	bacteriophage N4 receptor, outer membrane subunit;	99.61
PRK10747	398	putative protoheme IX biogenesis protein; Provisio	99.61
KOG1155	559	consensus Anaphase-promoting complex (APC), Cdc23	99.6
PRK12370	553	invasion protein regulator; Provisional	99.6
PF13041	50	PPR_2: PPR repeat family	99.6
COG3071	400	HemY Uncharacterized enzyme of heme biosynthesis [	99.59
COG2956	389	Predicted N-acetylglucosaminyl transferase [Carboh	99.59
PRK10049	765	pgaA outer membrane protein PgaA; Provisional	99.59
PRK12370	553	invasion protein regulator; Provisional	99.58
PRK10049	765	pgaA outer membrane protein PgaA; Provisional	99.57
TIGR02521	234	type_IV_pilW type IV pilus biogenesis/stability pr	99.56
COG2956	389	Predicted N-acetylglucosaminyl transferase [Carboh	99.56
TIGR00540	409	hemY_coli hemY protein. This is an uncharacterized	99.56
PRK14574	822	hmsH outer membrane protein; Provisional	99.54
KOG1126	638	consensus DNA-binding cell division cycle control	99.53
KOG1129	478	consensus TPR repeat-containing protein [General f	99.52
PRK14574	822	hmsH outer membrane protein; Provisional	99.51
KOG1155	559	consensus Anaphase-promoting complex (APC), Cdc23	99.5
KOG4318	1088	consensus Bicoid mRNA stability factor [RNA proces	99.5
PF13041	50	PPR_2: PPR repeat family	99.5
KOG1129	478	consensus TPR repeat-containing protein [General f	99.49
KOG4318	1088	consensus Bicoid mRNA stability factor [RNA proces	99.47
KOG2003	840	consensus TPR repeat-containing protein [General f	99.46
COG3063	250	PilF Tfp pilus assembly protein PilF [Cell motilit	99.42
COG3071	400	HemY Uncharacterized enzyme of heme biosynthesis [	99.41
KOG2076	895	consensus RNA polymerase III transcription factor	99.39
KOG2002	1018	consensus TPR-containing nuclear phosphoprotein th	99.39
KOG1840	508	consensus Kinesin light chain [Cytoskeleton]	99.34
KOG1840	508	consensus Kinesin light chain [Cytoskeleton]	99.33
KOG0547	606	consensus Translocase of outer mitochondrial membr	99.33
KOG2076	895	consensus RNA polymerase III transcription factor	99.32
PRK11189	296	lipoprotein NlpI; Provisional	99.32
KOG1173	611	consensus Anaphase-promoting complex (APC), Cdc16	99.31
PF12569	517	NARP1: NMDA receptor-regulated protein 1 ; InterPr	99.3
PRK11189	296	lipoprotein NlpI; Provisional	99.29
KOG2003	840	consensus TPR repeat-containing protein [General f	99.27
KOG0495	913	consensus HAT repeat protein [RNA processing and m	99.27
COG3063	250	PilF Tfp pilus assembly protein PilF [Cell motilit	99.25
PF12569	517	NARP1: NMDA receptor-regulated protein 1 ; InterPr	99.25
KOG0495	913	consensus HAT repeat protein [RNA processing and m	99.25
KOG2002	1018	consensus TPR-containing nuclear phosphoprotein th	99.23
KOG1173	611	consensus Anaphase-promoting complex (APC), Cdc16	99.22
KOG0547	606	consensus Translocase of outer mitochondrial membr	99.22
KOG1915	677	consensus Cell cycle control protein (crooked neck	99.2
PF04733	290	Coatomer_E: Coatomer epsilon subunit; InterPro: IP	99.18
KOG1174	564	consensus Anaphase-promoting complex (APC), subuni	99.17
cd05804	355	StaR_like StaR_like; a well-conserved protein foun	99.13
KOG1915	677	consensus Cell cycle control protein (crooked neck	99.11
cd05804	355	StaR_like StaR_like; a well-conserved protein foun	99.1
PLN02789	320	farnesyltranstransferase	99.07
KOG1070	1710	consensus rRNA processing protein Rrp5 [RNA proces	99.07
PF04733	290	Coatomer_E: Coatomer epsilon subunit; InterPro: IP	99.01
KOG1125	579	consensus TPR repeat-containing protein [General f	99.0
KOG1128	777	consensus Uncharacterized conserved protein, conta	98.99
PRK10370	198	formate-dependent nitrite reductase complex subuni	98.97
PLN02789	320	farnesyltranstransferase	98.94
TIGR03302	235	OM_YfiO outer membrane assembly lipoprotein YfiO.	98.92
PF12854	34	PPR_1: PPR repeat	98.9
KOG1128	777	consensus Uncharacterized conserved protein, conta	98.89
KOG1070	1710	consensus rRNA processing protein Rrp5 [RNA proces	98.89
TIGR03302	235	OM_YfiO outer membrane assembly lipoprotein YfiO.	98.88
PF12854	34	PPR_1: PPR repeat	98.88
COG5010	257	TadD Flp pilus assembly protein TadD, contains TPR	98.86
KOG2047	835	consensus mRNA splicing factor [RNA processing and	98.85
PRK15179	694	Vi polysaccharide biosynthesis protein TviE; Provi	98.84
PRK14720	906	transcript cleavage factor/unknown domain fusion p	98.8
PRK10370	198	formate-dependent nitrite reductase complex subuni	98.8
COG5010	257	TadD Flp pilus assembly protein TadD, contains TPR	98.8
KOG1125	579	consensus TPR repeat-containing protein [General f	98.79
KOG3081	299	consensus Vesicle coat complex COPI, epsilon subun	98.78
PRK15359	144	type III secretion system chaperone protein SscB;	98.77
PRK15359	144	type III secretion system chaperone protein SscB;	98.77
PRK15179	694	Vi polysaccharide biosynthesis protein TviE; Provi	98.74
KOG1174	564	consensus Anaphase-promoting complex (APC), subuni	98.74
KOG4340	459	consensus Uncharacterized conserved protein [Funct	98.7
KOG2047	835	consensus mRNA splicing factor [RNA processing and	98.68
PRK04841	903	transcriptional regulator MalT; Provisional	98.66
KOG4162	799	consensus Predicted calmodulin-binding protein [Si	98.66
PF13812	34	PPR_3: Pentatricopeptide repeat domain	98.65
KOG4340	459	consensus Uncharacterized conserved protein [Funct	98.65
KOG3060	289	consensus Uncharacterized conserved protein [Funct	98.65
KOG3060	289	consensus Uncharacterized conserved protein [Funct	98.64
TIGR02552	135	LcrH_SycD type III secretion low calcium response	98.63
COG4783	484	Putative Zn-dependent protease, contains TPR repea	98.63
TIGR00756	35	PPR pentatricopeptide repeat domain (PPR motif). T	98.62
PF09295	395	ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter	98.59
TIGR02552	135	LcrH_SycD type III secretion low calcium response	98.58
PF09295	395	ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter	98.56
KOG1914	656	consensus mRNA cleavage and polyadenylation factor	98.56
KOG3785	557	consensus Uncharacterized conserved protein [Funct	98.56
TIGR00756	35	PPR pentatricopeptide repeat domain (PPR motif). T	98.52
KOG1156	700	consensus N-terminal acetyltransferase [Chromatin	98.52
PRK14720	906	transcript cleavage factor/unknown domain fusion p	98.52
PF10037	429	MRP-S27: Mitochondrial 28S ribosomal protein S27;	98.51
PF09976	145	TPR_21: Tetratricopeptide repeat; InterPro: IPR018	98.49
KOG2376	652	consensus Signal recognition particle, subunit Srp	98.48
PF08579	120	RPM2: Mitochondrial ribonuclease P subunit (RPM2);	98.47
KOG1156	700	consensus N-terminal acetyltransferase [Chromatin	98.46
KOG3785	557	consensus Uncharacterized conserved protein [Funct	98.46
PF13812	34	PPR_3: Pentatricopeptide repeat domain	98.45
PF10037	429	MRP-S27: Mitochondrial 28S ribosomal protein S27;	98.45
KOG4162	799	consensus Predicted calmodulin-binding protein [Si	98.44
COG4783	484	Putative Zn-dependent protease, contains TPR repea	98.43
KOG3081	299	consensus Vesicle coat complex COPI, epsilon subun	98.43
PF09976	145	TPR_21: Tetratricopeptide repeat; InterPro: IPR018	98.41
PRK04841	903	transcriptional regulator MalT; Provisional	98.38
KOG2053	932	consensus Mitochondrial inheritance and actin cyto	98.37
PF08579	120	RPM2: Mitochondrial ribonuclease P subunit (RPM2);	98.34
KOG1127	1238	consensus TPR repeat-containing protein [RNA proce	98.33
PF01535	31	PPR: PPR repeat; InterPro: IPR002885 This entry re	98.32
PRK10866	243	outer membrane biogenesis protein BamD; Provisiona	98.28
KOG0985	1666	consensus Vesicle coat protein clathrin, heavy cha	98.28
KOG3617	1416	consensus WD40 and TPR repeat-containing protein [	98.24
KOG0548	539	consensus Molecular co-chaperone STI1 [Posttransla	98.23
KOG2053	932	consensus Mitochondrial inheritance and actin cyto	98.23
KOG0624	504	consensus dsRNA-activated protein kinase inhibitor	98.21
cd00189	100	TPR Tetratricopeptide repeat domain; typically con	98.17
TIGR02795	119	tol_pal_ybgF tol-pal system protein YbgF. Members	98.17
PF01535	31	PPR: PPR repeat; InterPro: IPR002885 This entry re	98.16
cd00189	100	TPR Tetratricopeptide repeat domain; typically con	98.16
PF06239	228	ECSIT: Evolutionarily conserved signalling interme	98.15
PF05843	280	Suf: Suppressor of forked protein (Suf); InterPro:	98.15
KOG3617	1416	consensus WD40 and TPR repeat-containing protein [	98.14
KOG0985	1666	consensus Vesicle coat protein clathrin, heavy cha	98.14
KOG3616	1636	consensus Selective LIM binding factor [Transcript	98.13
PF05843	280	Suf: Suppressor of forked protein (Suf); InterPro:	98.13
PF06239	228	ECSIT: Evolutionarily conserved signalling interme	98.12
KOG3616	1636	consensus Selective LIM binding factor [Transcript	98.11
KOG0624	504	consensus dsRNA-activated protein kinase inhibitor	98.11
TIGR02795	119	tol_pal_ybgF tol-pal system protein YbgF. Members	98.09
PF12895	84	Apc3: Anaphase-promoting complex, cyclosome, subun	98.07
PRK02603	172	photosystem I assembly protein Ycf3; Provisional	98.03
KOG1914	656	consensus mRNA cleavage and polyadenylation factor	98.02
PLN03088	356	SGT1, suppressor of G2 allele of SKP1; Provisional	98.01
PLN03088	356	SGT1, suppressor of G2 allele of SKP1; Provisional	98.01
PRK15363	157	pathogenicity island 2 chaperone protein SscA; Pro	98.0
PF12895	84	Apc3: Anaphase-promoting complex, cyclosome, subun	97.99
KOG0548	539	consensus Molecular co-chaperone STI1 [Posttransla	97.99
PRK10153	517	DNA-binding transcriptional activator CadC; Provis	97.98
PRK15363	157	pathogenicity island 2 chaperone protein SscA; Pro	97.97
CHL00033	168	ycf3 photosystem I assembly protein Ycf3	97.96
PRK02603	172	photosystem I assembly protein Ycf3; Provisional	97.93
PF14938	282	SNAP: Soluble NSF attachment protein, SNAP; PDB: 1	97.89
PRK10153	517	DNA-binding transcriptional activator CadC; Provis	97.89
PF14938	282	SNAP: Soluble NSF attachment protein, SNAP; PDB: 1	97.88
KOG1127	1238	consensus TPR repeat-containing protein [RNA proce	97.87
PF13525	203	YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M	97.85
COG4700	251	Uncharacterized protein conserved in bacteria cont	97.84
PF12688	120	TPR_5: Tetratrico peptide repeat	97.8
COG4235	287	Cytochrome c biogenesis factor [Posttranslational	97.8
CHL00033	168	ycf3 photosystem I assembly protein Ycf3	97.76
KOG2796	366	consensus Uncharacterized conserved protein [Funct	97.75
KOG0553	304	consensus TPR repeat-containing protein [General f	97.74
PF14559	68	TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN	97.71
PRK10866	243	outer membrane biogenesis protein BamD; Provisiona	97.68
KOG2376	652	consensus Signal recognition particle, subunit Srp	97.68
PF14559	68	TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN	97.67
KOG2041	1189	consensus WD40 repeat protein [General function pr	97.65
PF13432	65	TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL	97.63
PF03704	146	BTAD: Bacterial transcriptional activator domain;	97.61
KOG0553	304	consensus TPR repeat-containing protein [General f	97.6
PF12688	120	TPR_5: Tetratrico peptide repeat	97.57
COG4235	287	Cytochrome c biogenesis factor [Posttranslational	97.56
PF04840	319	Vps16_C: Vps16, C-terminal region; InterPro: IPR00	97.56
PF13414	69	TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A	97.56
PF13432	65	TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL	97.54
PF13414	69	TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A	97.52
KOG1538	1081	consensus Uncharacterized conserved protein WDR10,	97.48
KOG2796	366	consensus Uncharacterized conserved protein [Funct	97.46
PRK10803	263	tol-pal system protein YbgF; Provisional	97.45
PF03704	146	BTAD: Bacterial transcriptional activator domain;	97.44
PF12921	126	ATP13: Mitochondrial ATPase expression; InterPro:	97.43
PF13525	203	YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M	97.4
PRK10803	263	tol-pal system protein YbgF; Provisional	97.38
PF13281	374	DUF4071: Domain of unknown function (DUF4071)	97.35
PRK15331	165	chaperone protein SicA; Provisional	97.29
PF12921	126	ATP13: Mitochondrial ATPase expression; InterPro:	97.27
PF13371	73	TPR_9: Tetratricopeptide repeat	97.21
PF13424	78	TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15	97.15
PF13371	73	TPR_9: Tetratricopeptide repeat	97.06
PRK15331	165	chaperone protein SicA; Provisional	97.06
PF13424	78	TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15	96.92
PLN03098	453	LPA1 LOW PSII ACCUMULATION1; Provisional	96.83
PF09205	161	DUF1955: Domain of unknown function (DUF1955); Int	96.81
COG4700	251	Uncharacterized protein conserved in bacteria cont	96.81
PF13170	297	DUF4003: Protein of unknown function (DUF4003)	96.81
PF09205	161	DUF1955: Domain of unknown function (DUF1955); Int	96.8
KOG0543	397	consensus FKBP-type peptidyl-prolyl cis-trans isom	96.79
PF10300	468	DUF3808: Protein of unknown function (DUF3808); In	96.77
KOG1130	639	consensus Predicted G-alpha GTPase interaction pro	96.76
KOG1538	1081	consensus Uncharacterized conserved protein WDR10,	96.73
KOG3941	406	consensus Intermediate in Toll signal transduction	96.7
PF04053	443	Coatomer_WDAD: Coatomer WD associated region ; Int	96.68
KOG3941	406	consensus Intermediate in Toll signal transduction	96.62
PF07079	549	DUF1347: Protein of unknown function (DUF1347); In	96.46
PF04840	319	Vps16_C: Vps16, C-terminal region; InterPro: IPR00	96.45
COG3898	531	Uncharacterized membrane-bound protein [Function u	96.34
smart00299	140	CLH Clathrin heavy chain repeat homology.	96.33
PF13512	142	TPR_18: Tetratricopeptide repeat	96.23
PF10300	468	DUF3808: Protein of unknown function (DUF3808); In	96.22
KOG2610	491	consensus Uncharacterized conserved protein [Funct	96.22
PF07035	167	Mic1: Colon cancer-associated protein Mic1-like; I	96.17
COG4105	254	ComL DNA uptake lipoprotein [General function pred	96.16
KOG2280	829	consensus Vacuolar assembly/sorting protein VPS16	96.15
COG5107	660	RNA14 Pre-mRNA 3'-end processing (cleavage and pol	96.14
PF08631	278	SPO22: Meiosis protein SPO22/ZIP4 like; InterPro:	96.09
COG1729	262	Uncharacterized protein conserved in bacteria [Fun	96.06
PLN03098	453	LPA1 LOW PSII ACCUMULATION1; Provisional	96.05
smart00299	140	CLH Clathrin heavy chain repeat homology.	96.01
KOG2041	1189	consensus WD40 repeat protein [General function pr	96.0
KOG0543	397	consensus FKBP-type peptidyl-prolyl cis-trans isom	95.96
COG1729	262	Uncharacterized protein conserved in bacteria [Fun	95.95
COG3118	304	Thioredoxin domain-containing protein [Posttransla	95.93
COG3629	280	DnrI DNA-binding transcriptional activator of the	95.9
KOG2114	933	consensus Vacuolar assembly/sorting protein PEP5/V	95.89
PF04053	443	Coatomer_WDAD: Coatomer WD associated region ; Int	95.89
PF13281	374	DUF4071: Domain of unknown function (DUF4071)	95.83
KOG2114	933	consensus Vacuolar assembly/sorting protein PEP5/V	95.69
PF13428	44	TPR_14: Tetratricopeptide repeat	95.68
COG3898	531	Uncharacterized membrane-bound protein [Function u	95.54
PF13428	44	TPR_14: Tetratricopeptide repeat	95.49
PRK11906	458	transcriptional regulator; Provisional	95.44
KOG1130	639	consensus Predicted G-alpha GTPase interaction pro	95.37
KOG1920	1265	consensus IkappaB kinase complex, IKAP component [	95.28
KOG4570	418	consensus Uncharacterized conserved protein [Funct	95.03
PF04184	539	ST7: ST7 protein; InterPro: IPR007311 The ST7 (for	94.96
PF07035	167	Mic1: Colon cancer-associated protein Mic1-like; I	94.95
PRK11906	458	transcriptional regulator; Provisional	94.94
COG3118	304	Thioredoxin domain-containing protein [Posttransla	94.93
KOG4555	175	consensus TPR repeat-containing protein [Function	94.9
PF04184	539	ST7: ST7 protein; InterPro: IPR007311 The ST7 (for	94.89
PF13176	36	TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_	94.87
COG0457	291	NrfG FOG: TPR repeat [General function prediction	94.86
COG4649	221	Uncharacterized protein conserved in bacteria [Fun	94.8
PF10602	177	RPN7: 26S proteasome subunit RPN7; InterPro: IPR01	94.78
PF07079	549	DUF1347: Protein of unknown function (DUF1347); In	94.74
KOG0550	486	consensus Molecular chaperone (DnaJ superfamily) [	94.72
PF13176	36	TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_	94.67
KOG1941	518	consensus Acetylcholine receptor-associated protei	94.65
PF08631	278	SPO22: Meiosis protein SPO22/ZIP4 like; InterPro:	94.46
COG4105	254	ComL DNA uptake lipoprotein [General function pred	94.28
KOG4555	175	consensus TPR repeat-containing protein [Function	94.18
KOG1920	1265	consensus IkappaB kinase complex, IKAP component [	94.11
PF00637	143	Clathrin: Region in Clathrin and VPS; InterPro: IP	93.98
PF13512	142	TPR_18: Tetratricopeptide repeat	93.88
KOG1585	308	consensus Protein required for fusion of vesicles	93.73
PF10602	177	RPN7: 26S proteasome subunit RPN7; InterPro: IPR01	93.67
KOG2610	491	consensus Uncharacterized conserved protein [Funct	93.66
cd00923	103	Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va.	93.66
KOG0550	486	consensus Molecular chaperone (DnaJ superfamily) [	93.47
COG3629	280	DnrI DNA-binding transcriptional activator of the	93.46
PF11207	203	DUF2989: Protein of unknown function (DUF2989); In	93.34
KOG1585	308	consensus Protein required for fusion of vesicles	93.18
cd00923	103	Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va.	93.16
COG5107	660	RNA14 Pre-mRNA 3'-end processing (cleavage and pol	93.13
PF13431	34	TPR_17: Tetratricopeptide repeat	93.07
PF09613	160	HrpB1_HrpK: Bacterial type III secretion protein (	93.05
PF00515	34	TPR_1: Tetratricopeptide repeat; InterPro: IPR0014	92.96
PF00637	143	Clathrin: Region in Clathrin and VPS; InterPro: IP	92.93
PF13170	297	DUF4003: Protein of unknown function (DUF4003)	92.86
PF02284	108	COX5A: Cytochrome c oxidase subunit Va; InterPro:	92.84
PF13374	42	TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT	92.77
PF09613	160	HrpB1_HrpK: Bacterial type III secretion protein (	92.52
KOG1550	552	consensus Extracellular protein SEL-1 and related	92.47
KOG4570	418	consensus Uncharacterized conserved protein [Funct	92.46
COG0457	291	NrfG FOG: TPR repeat [General function prediction	92.16
KOG1550	552	consensus Extracellular protein SEL-1 and related	92.15
PF07719	34	TPR_2: Tetratricopeptide repeat; InterPro: IPR0131	91.97
PF13431	34	TPR_17: Tetratricopeptide repeat	91.92
PF13374	42	TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT	91.89
PF02284	108	COX5A: Cytochrome c oxidase subunit Va; InterPro:	91.66
KOG1258	577	consensus mRNA processing protein [RNA processing	91.64
KOG4234	271	consensus TPR repeat-containing protein [General f	91.41
PF00515	34	TPR_1: Tetratricopeptide repeat; InterPro: IPR0014	91.38
PF13929	292	mRNA_stabil: mRNA stabilisation	90.86
PRK15180	831	Vi polysaccharide biosynthesis protein TviD; Provi	90.62
KOG0276	794	consensus Vesicle coat complex COPI, beta' subunit	90.44
PF13174	33	TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_	90.28
PF02259	352	FAT: FAT domain; InterPro: IPR003151 The FAT domai	90.1
PRK15180	831	Vi polysaccharide biosynthesis protein TviD; Provi	89.77
PF07719	34	TPR_2: Tetratricopeptide repeat; InterPro: IPR0131	89.77
TIGR02561	153	HrpB1_HrpK type III secretion protein HrpB1/HrpK.	89.08
COG1747	711	Uncharacterized N-terminal domain of the transcrip	88.98
PF13174	33	TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_	88.95
COG4455	273	ImpE Protein of avirulence locus involved in tempe	88.8
KOG1464	440	consensus COP9 signalosome, subunit CSN2 [Posttran	88.67
PF08424	321	NRDE-2: NRDE-2, necessary for RNA interference; In	88.66
COG5108	1117	RPO41 Mitochondrial DNA-directed RNA polymerase [T	88.48
COG2976	207	Uncharacterized protein conserved in bacteria [Fun	88.42
PF07163	309	Pex26: Pex26 protein; InterPro: IPR010797 This fam	88.23
COG1747	711	Uncharacterized N-terminal domain of the transcrip	88.22
KOG1941	518	consensus Acetylcholine receptor-associated protei	88.14
PF10345	608	Cohesin_load: Cohesin loading factor; InterPro: IP	88.13
PF13181	34	TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_	88.13
PF04097	613	Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic9	88.02
TIGR03504	44	FimV_Cterm FimV C-terminal domain. This protein is	87.91
KOG2396	568	consensus HAT (Half-A-TPR) repeat-containing prote	87.87
COG4455	273	ImpE Protein of avirulence locus involved in tempe	87.84
PF13181	34	TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_	87.73
KOG0276	794	consensus Vesicle coat complex COPI, beta' subunit	87.62
TIGR02561	153	HrpB1_HrpK type III secretion protein HrpB1/HrpK.	87.47
TIGR03504	44	FimV_Cterm FimV C-terminal domain. This protein is	87.43
PF06552	186	TOM20_plant: Plant specific mitochondrial import r	87.26
PF10579	80	Rapsyn_N: Rapsyn N-terminal myristoylation and lin	87.19
PF11207	203	DUF2989: Protein of unknown function (DUF2989); In	86.87
COG4649	221	Uncharacterized protein conserved in bacteria [Fun	86.62
PHA02875	413	ankyrin repeat protein; Provisional	86.49
PF07721	26	TPR_4: Tetratricopeptide repeat; InterPro: IPR0117	86.4
PF02259	352	FAT: FAT domain; InterPro: IPR003151 The FAT domai	85.9
PRK09687	280	putative lyase; Provisional	85.53
COG4785	297	NlpI Lipoprotein NlpI, contains TPR repeats [Gener	85.37
PF13929	292	mRNA_stabil: mRNA stabilisation	84.97
PF10345	608	Cohesin_load: Cohesin loading factor; InterPro: IP	84.37
KOG4077	149	consensus Cytochrome c oxidase, subunit Va/COX6 [E	83.99
KOG4648	536	consensus Uncharacterized conserved protein, conta	83.25
PF07163	309	Pex26: Pex26 protein; InterPro: IPR010797 This fam	83.15
PF13762	145	MNE1: Mitochondrial splicing apparatus component	82.63
PF11846	193	DUF3366: Domain of unknown function (DUF3366); Int	82.3
COG3947	361	Response regulator containing CheY-like receiver a	81.63
PF11848	48	DUF3368: Domain of unknown function (DUF3368); Int	81.37
COG2976	207	Uncharacterized protein conserved in bacteria [Fun	80.94
PF10579	80	Rapsyn_N: Rapsyn N-terminal myristoylation and lin	80.78
KOG1258	577	consensus mRNA processing protein [RNA processing	80.51
PHA02875	413	ankyrin repeat protein; Provisional	80.5
smart00028	34	TPR Tetratricopeptide repeats. Repeats present in	80.47
KOG4077	149	consensus Cytochrome c oxidase, subunit Va/COX6 [E	80.44
PF06552	186	TOM20_plant: Plant specific mitochondrial import r	80.35
KOG1464	440	consensus COP9 signalosome, subunit CSN2 [Posttran	80.22
COG2909	894	MalT ATP-dependent transcriptional regulator [Tran	80.11
PF14669	233	Asp_Glu_race_2: Putative aspartate racemase	80.09
KOG4648	536	consensus Uncharacterized conserved protein, conta	80.04

>PLN03218 maturation of RBCL 1; Provisional

Probab=100.00  E-value=1.7e-53  Score=376.57  Aligned_cols=287  Identities=21%  Similarity=0.342  Sum_probs=141.1

Q ss_pred             ccHHHHHHHHHHHHhcCchhhHHHHHHHHHhcCCCCcHHHHHHHHHHHHhhCCCCcchhhHHHHHHHHHHHHHHHhcCCC
Q 021791            2 PNVKMYTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPNERFEKTIRNAEKVFDEMRVRGIE   81 (307)
Q Consensus         2 p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~   81 (307)
                      ||+.+||.+|.+|++.|+++.|.++|++|.+.|+.||..+|+.+|.+|++          .|++++|.++|++|.+.|+.
T Consensus       470 pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k----------~G~~eeAl~lf~~M~~~Gv~  539 (1060)
T PLN03218        470 ADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCAR----------AGQVAKAFGAYGIMRSKNVK  539 (1060)
T ss_pred             CCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH----------CcCHHHHHHHHHHHHHcCCC
Confidence            45555555555555555555555555555555555555555555555555          44444555555555544455


Q ss_pred             CCHHHHHHHHHHHHhcCCchhHHHHHHHHHH--cCCCCchhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHhhHHH
Q 021791           82 PDVTSFSIVLHVYSRAHKPQLSLDKLNFMKE--KGICPTVATYTSVVKCLCSCGRIEDAEELLGEMVRNGVSPSAETYNC  159 (307)
Q Consensus        82 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~  159 (307)
                      ||..+|+.++.+|++.|++++|.++|++|..  .|+.||..+|+.++.+|++.|++++|.++|+.|.+.|+.|+..+|+.
T Consensus       540 PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf~~M~e~gi~p~~~tyns  619 (1060)
T PLN03218        540 PDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTI  619 (1060)
T ss_pred             CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCChHHHHH
Confidence            5555555555555555555555555554443  33444444444444444444444444444444444444444444444


Q ss_pred             HHHHHhcCCChhHHHHHHHHHhhcCCCCccHHHHHHHHHHHHhcCcHHHHHHHHHHHhhCCCCCCHHhHHHHHHHHHccC
Q 021791          160 FFKEYRGRKDANGAMKLYRQMKEDDLCVPNIHTYNILIGMFMALNRMDMVREIWNHVKGSELGLDLDSYTMLIHGLCEKQ  239 (307)
Q Consensus       160 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g  239 (307)
                      +|.+|++.|++++|.++|++|.+.+. .||..+|+.++.+|++.|++++|.++++.|.+.|+.|+..+|+.+|.+|++.|
T Consensus       620 LI~ay~k~G~~deAl~lf~eM~~~Gv-~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd~~tynsLI~ay~k~G  698 (1060)
T PLN03218        620 AVNSCSQKGDWDFALSIYDDMKKKGV-KPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAK  698 (1060)
T ss_pred             HHHHHHhcCCHHHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCC
Confidence            44444444444444444444444443 44444444444444444444444444444444444444444444444444444


Q ss_pred             cHHHHHHHHHHHHHcCCCCcHhhHHHHHHHHhhchhHHHHHHHHHHhhhcCCCCCcccCC
Q 021791          240 KWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDEESITFGSEFQN  299 (307)
Q Consensus       240 ~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~  299 (307)
                      ++++|.++|++|.+.|+.||..+|+.|+.+|++.|++++|.+++++|.+.|+.|+..+++
T Consensus       699 ~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~  758 (1060)
T PLN03218        699 NWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYS  758 (1060)
T ss_pred             CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHH
Confidence            444444444444444444444444444444444444444444444444444444443333

>PLN03218 maturation of RBCL 1; Provisional

Probab=100.00  E-value=5.6e-53  Score=373.24  Aligned_cols=294  Identities=16%  Similarity=0.260  Sum_probs=286.6

Q ss_pred             ccHHHHHHHHHHHHhcCchhhHHHHHHHHHhcCCCCcHHHHHHHHHHHHhhCCCCcchhhHHHHHHHHHHHHHHHhcCCC
Q 021791            2 PNVKMYTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPNERFEKTIRNAEKVFDEMRVRGIE   81 (307)
Q Consensus         2 p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~   81 (307)
                      ||..+|+.+|.+|++.|+++.|.++|++|.+.|+.||..+|+.+|.+|++          .|++++|.++|++|.+.|+.
T Consensus       435 pd~~Tyn~LL~a~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k----------~G~vd~A~~vf~eM~~~Gv~  504 (1060)
T PLN03218        435 PTLSTFNMLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAK----------SGKVDAMFEVFHEMVNAGVE  504 (1060)
T ss_pred             CCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh----------CcCHHHHHHHHHHHHHcCCC
Confidence            89999999999999999999999999999999999999999999999999          88899999999999999999


Q ss_pred             CCHHHHHHHHHHHHhcCCchhHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCChHHHHHHHHHHHh--CCCCCCHhhHHH
Q 021791           82 PDVTSFSIVLHVYSRAHKPQLSLDKLNFMKEKGICPTVATYTSVVKCLCSCGRIEDAEELLGEMVR--NGVSPSAETYNC  159 (307)
Q Consensus        82 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~~~~  159 (307)
                      ||..+|+.+|.+|++.|++++|.++|+.|.+.|+.||..+|+.+|.+|++.|++++|.++|++|..  .|+.||..+|+.
T Consensus       505 PdvvTynaLI~gy~k~G~~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTyna  584 (1060)
T PLN03218        505 ANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGA  584 (1060)
T ss_pred             CCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHH
Confidence            999999999999999999999999999999999999999999999999999999999999999986  678999999999


Q ss_pred             HHHHHhcCCChhHHHHHHHHHhhcCCCCccHHHHHHHHHHHHhcCcHHHHHHHHHHHhhCCCCCCHHhHHHHHHHHHccC
Q 021791          160 FFKEYRGRKDANGAMKLYRQMKEDDLCVPNIHTYNILIGMFMALNRMDMVREIWNHVKGSELGLDLDSYTMLIHGLCEKQ  239 (307)
Q Consensus       160 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g  239 (307)
                      ++.+|++.|++++|.++|+.|.+.+. .|+..+|+.++.+|++.|++++|.++|++|...|+.||..+|+.++.+|++.|
T Consensus       585 LI~ay~k~G~ldeA~elf~~M~e~gi-~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G  663 (1060)
T PLN03218        585 LMKACANAGQVDRAKEVYQMIHEYNI-KGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAG  663 (1060)
T ss_pred             HHHHHHHCCCHHHHHHHHHHHHHcCC-CCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCC
Confidence            99999999999999999999999987 99999999999999999999999999999999999999999999999999999


Q ss_pred             cHHHHHHHHHHHHHcCCCCcHhhHHHHHHHHhhchhHHHHHHHHHHhhhcCCCCCcccCCCCCCCCC
Q 021791          240 KWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDEESITFGSEFQNYHFKPYR  306 (307)
Q Consensus       240 ~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~  306 (307)
                      ++++|.+++++|.+.|+.||..+|+.++.+|.+.|++++|.++|++|.+.++.++...++.+|..|.
T Consensus       664 ~~eeA~~l~~eM~k~G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~  730 (1060)
T PLN03218        664 DLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALC  730 (1060)
T ss_pred             CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999999999999999999888888777664

>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional

Probab=100.00  E-value=2.6e-48  Score=340.00  Aligned_cols=286  Identities=19%  Similarity=0.223  Sum_probs=225.2

Q ss_pred             ccHHHHHHHHHHHHhcCchhhHHHHHHHHHhcCCCCcHHHHHHHHHHHHhhCCCCcchhhHHHHHHHHHHHHHHHhcCCC
Q 021791            2 PNVKMYTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPNERFEKTIRNAEKVFDEMRVRGIE   81 (307)
Q Consensus         2 p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~   81 (307)
                      ||+.+||++|.+|++.|++++|.++|++|.+.|+.|+..+|+.++.+|+.          .+..+.+.+++..+.+.|+.
T Consensus       187 ~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~----------~~~~~~~~~l~~~~~~~g~~  256 (697)
T PLN03081        187 RNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAG----------LGSARAGQQLHCCVLKTGVV  256 (697)
T ss_pred             CCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhc----------CCcHHHHHHHHHHHHHhCCC
Confidence            56667777777777777777777777777766666777777666666666          44555555666666666666


Q ss_pred             CCHHHHHHHHHHHHhcCCchhHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHhhHHHHH
Q 021791           82 PDVTSFSIVLHVYSRAHKPQLSLDKLNFMKEKGICPTVATYTSVVKCLCSCGRIEDAEELLGEMVRNGVSPSAETYNCFF  161 (307)
Q Consensus        82 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~  161 (307)
                      ||..+|+.|+.+|++.|++++|.++|+.|.+    +|..+|+.++.+|++.|++++|.++|++|.+.|+.||..||+.++
T Consensus       257 ~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~----~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd~~t~~~ll  332 (697)
T PLN03081        257 GDTFVSCALIDMYSKCGDIEDARCVFDGMPE----KTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMI  332 (697)
T ss_pred             ccceeHHHHHHHHHHCCCHHHHHHHHHhCCC----CChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence            6777777778888888888888888887753    477788888888888888888888888888888888888888888


Q ss_pred             HHHhcCCChhHHHHHHHHHhhcCCCCccHHHHHHHHHHHHhcCcHHHHHHHHHHHhhCCCCCCHHhHHHHHHHHHccCcH
Q 021791          162 KEYRGRKDANGAMKLYRQMKEDDLCVPNIHTYNILIGMFMALNRMDMVREIWNHVKGSELGLDLDSYTMLIHGLCEKQKW  241 (307)
Q Consensus       162 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~  241 (307)
                      .+|++.|++++|.+++..|.+.+. .||..++++|+.+|++.|++++|.++|+.|.+    ||..+||.||.+|+++|+.
T Consensus       333 ~a~~~~g~~~~a~~i~~~m~~~g~-~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~----~d~~t~n~lI~~y~~~G~~  407 (697)
T PLN03081        333 RIFSRLALLEHAKQAHAGLIRTGF-PLDIVANTALVDLYSKWGRMEDARNVFDRMPR----KNLISWNALIAGYGNHGRG  407 (697)
T ss_pred             HHHHhccchHHHHHHHHHHHHhCC-CCCeeehHHHHHHHHHCCCHHHHHHHHHhCCC----CCeeeHHHHHHHHHHcCCH
Confidence            888888888888888888888876 78888888888888888888888888888764    5778888888888888888


Q ss_pred             HHHHHHHHHHHHcCCCCcHhhHHHHHHHHhhchhHHHHHHHHHHhhh-cCCCCCcccCCCCCCCCC
Q 021791          242 KEACQYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDE-ESITFGSEFQNYHFKPYR  306 (307)
Q Consensus       242 ~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-~~~~~~~~~~~~~~~~~~  306 (307)
                      ++|.++|++|.+.|+.||..||..++.+|.+.|..++|.++|+.|.+ .++.++...++.++..|.
T Consensus       408 ~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~  473 (697)
T PLN03081        408 TKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLG  473 (697)
T ss_pred             HHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHH
Confidence            88888888888888888888888888888888888888888888865 588888777777766554

>PLN03077 Protein ECB2; Provisional

Probab=100.00  E-value=6.4e-47  Score=338.39  Aligned_cols=290  Identities=18%  Similarity=0.219  Sum_probs=206.8

Q ss_pred             ccHHHHHHHHHHHHhcCchhhHHHHHHHHHhcCCCCcHHHHHHHHHHHHhhCCCCcchhhHHHHHHHHHHHHHHHhcCCC
Q 021791            2 PNVKMYTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPNERFEKTIRNAEKVFDEMRVRGIE   81 (307)
Q Consensus         2 p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~   81 (307)
                      ||+.+||++|.+|++.|++++|+++|.+|...|+.||..||+.++.+|++          .++++.+.+++..|.+.|+.
T Consensus       251 ~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g~~Pd~~ty~~ll~a~~~----------~g~~~~a~~l~~~~~~~g~~  320 (857)
T PLN03077        251 RDCISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTITSVISACEL----------LGDERLGREMHGYVVKTGFA  320 (857)
T ss_pred             CCcchhHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHh----------cCChHHHHHHHHHHHHhCCc
Confidence            68899999999999999999999999999999999999999999999999          55566666666666666666


Q ss_pred             CCHHHHHHHHHHHHhcCCchhHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHhhHHHHH
Q 021791           82 PDVTSFSIVLHVYSRAHKPQLSLDKLNFMKEKGICPTVATYTSVVKCLCSCGRIEDAEELLGEMVRNGVSPSAETYNCFF  161 (307)
Q Consensus        82 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~  161 (307)
                      ||..+|+.|+.+|++.|++++|.++|++|..    ||..+|+.+|.+|++.|++++|.++|++|.+.|+.||..+|+.++
T Consensus       321 ~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~----~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll  396 (857)
T PLN03077        321 VDVSVCNSLIQMYLSLGSWGEAEKVFSRMET----KDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVL  396 (857)
T ss_pred             cchHHHHHHHHHHHhcCCHHHHHHHHhhCCC----CCeeeHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCceeHHHHH
Confidence            6666666666666666666666666665542    355555556666666666666666666555555555555555555


Q ss_pred             HHHhcCCChhHHHHHHHHHhhcCCCCccHHHHHHHHHHHHhcCcHHHHHHHHHHHhhC----------------------
Q 021791          162 KEYRGRKDANGAMKLYRQMKEDDLCVPNIHTYNILIGMFMALNRMDMVREIWNHVKGS----------------------  219 (307)
Q Consensus       162 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----------------------  219 (307)
                      .+|++.|+++.|.+++..+.+.+. .|+..+++.|+.+|++.|++++|.++|+.|.+.                      
T Consensus       397 ~a~~~~g~~~~a~~l~~~~~~~g~-~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~vs~~~mi~~~~~~g~~~eA~  475 (857)
T PLN03077        397 SACACLGDLDVGVKLHELAERKGL-ISYVVVANALIEMYSKCKCIDKALEVFHNIPEKDVISWTSIIAGLRLNNRCFEAL  475 (857)
T ss_pred             HHHhccchHHHHHHHHHHHHHhCC-CcchHHHHHHHHHHHHcCCHHHHHHHHHhCCCCCeeeHHHHHHHHHHCCCHHHHH
Confidence            555555555555555555555544 445555555555555555444444444443321                      


Q ss_pred             --------CC-----------------------------------------------------------------CCCHH
Q 021791          220 --------EL-----------------------------------------------------------------GLDLD  226 (307)
Q Consensus       220 --------~~-----------------------------------------------------------------~~~~~  226 (307)
                              ++                                                                 .||..
T Consensus       476 ~lf~~m~~~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~~~d~~  555 (857)
T PLN03077        476 IFFRQMLLTLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSHEKDVV  555 (857)
T ss_pred             HHHHHHHhCCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCCccceechHHHHHHHHcCCHHHHHHHHHhcCCChh
Confidence                    11                                                                 34666


Q ss_pred             hHHHHHHHHHccCcHHHHHHHHHHHHHcCCCCcHhhHHHHHHHHhhchhHHHHHHHHHHhh-hcCCCCCcccCCCCCCCC
Q 021791          227 SYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLD-EESITFGSEFQNYHFKPY  305 (307)
Q Consensus       227 ~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~-~~~~~~~~~~~~~~~~~~  305 (307)
                      +|+.+|.+|++.|+.++|.++|++|.+.|+.||..||..++.+|.+.|.+++|.++|+.|. +.++.|+.+.++.++..+
T Consensus       556 s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~~lv~~l  635 (857)
T PLN03077        556 SWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLL  635 (857)
T ss_pred             hHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHH
Confidence            7888888899999999999999999999999999999999999999999999999999998 778888887776666554


Q ss_pred             C
Q 021791          306 R  306 (307)
Q Consensus       306 ~  306 (307)
                      .
T Consensus       636 ~  636 (857)
T PLN03077        636 G  636 (857)
T ss_pred             H
Confidence            3

>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional

Probab=100.00  E-value=6.8e-46  Score=324.78  Aligned_cols=296  Identities=16%  Similarity=0.222  Sum_probs=240.4

Q ss_pred             ccHHHHHHHHHHHHhcCchhhHHHHHHHHHhcCCCCcHHHHHHHHHHHHhhCCCCcchhh--------------------
Q 021791            2 PNVKMYTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPNERF--------------------   61 (307)
Q Consensus         2 p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~~--------------------   61 (307)
                      ||..+|+.++.+|.+.++++.|.+++..|.+.|+.||..+|+.++.+|++.|+++.+..+                    
T Consensus       121 ~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~~~~~t~n~li~~~~  200 (697)
T PLN03081        121 LPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNRVLLMHVKCGMLIDARRLFDEMPERNLASWGTIIGGLV  200 (697)
T ss_pred             CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHHHHHHHHhcCCCHHHHHHHHhcCCCCCeeeHHHHHHHHH
Confidence            344555555555555555555555555555555555555555555555553322221111                    


Q ss_pred             -HHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCchhHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCChHHHHH
Q 021791           62 -EKTIRNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHKPQLSLDKLNFMKEKGICPTVATYTSVVKCLCSCGRIEDAEE  140 (307)
Q Consensus        62 -~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~  140 (307)
                       .|++++|.++|++|.+.|+.|+..+|+.++.+|++.|+.+.+.+++..+.+.|+.||..+++.++.+|++.|++++|.+
T Consensus       201 ~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~  280 (697)
T PLN03081        201 DAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARC  280 (697)
T ss_pred             HCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHHHHHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHH
Confidence             5667777777777777777777777777777777777777777777777777888888888999999999999999999


Q ss_pred             HHHHHHhCCCCCCHhhHHHHHHHHhcCCChhHHHHHHHHHhhcCCCCccHHHHHHHHHHHHhcCcHHHHHHHHHHHhhCC
Q 021791          141 LLGEMVRNGVSPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDDLCVPNIHTYNILIGMFMALNRMDMVREIWNHVKGSE  220 (307)
Q Consensus       141 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~  220 (307)
                      +|++|..    +|..+|+.++.+|++.|+.++|.++|++|.+.+. .||..||+.++.+|++.|++++|.+++..|.+.|
T Consensus       281 vf~~m~~----~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~-~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g  355 (697)
T PLN03081        281 VFDGMPE----KTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGV-SIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTG  355 (697)
T ss_pred             HHHhCCC----CChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhC
Confidence            9999864    5899999999999999999999999999999887 9999999999999999999999999999999999


Q ss_pred             CCCCHHhHHHHHHHHHccCcHHHHHHHHHHHHHcCCCCcHhhHHHHHHHHhhchhHHHHHHHHHHhhhcCCCCCcccCCC
Q 021791          221 LGLDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDEESITFGSEFQNY  300 (307)
Q Consensus       221 ~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~  300 (307)
                      +.||..+|+.++.+|++.|++++|.++|++|.    .||..+|+.|+.+|.+.|+.++|.++|++|.+.|+.|+..+++.
T Consensus       356 ~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~----~~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~  431 (697)
T PLN03081        356 FPLDIVANTALVDLYSKWGRMEDARNVFDRMP----RKNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLA  431 (697)
T ss_pred             CCCCeeehHHHHHHHHHCCCHHHHHHHHHhCC----CCCeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHH
Confidence            99999999999999999999999999999985    47899999999999999999999999999999999999988887


Q ss_pred             CCCCCC
Q 021791          301 HFKPYR  306 (307)
Q Consensus       301 ~~~~~~  306 (307)
                      ++.+|.
T Consensus       432 ll~a~~  437 (697)
T PLN03081        432 VLSACR  437 (697)
T ss_pred             HHHHHh
Confidence            776654

>PLN03077 Protein ECB2; Provisional

Probab=100.00  E-value=3.3e-46  Score=333.82  Aligned_cols=285  Identities=16%  Similarity=0.202  Sum_probs=204.7

Q ss_pred             ccHHHHHHHHHHHHhcCchhhHHHHHHHHHhcCCCCcHHHHHHHHHHHHhhCCCCcchhhHHHHHHHHHHHHHHHhcCCC
Q 021791            2 PNVKMYTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPNERFEKTIRNAEKVFDEMRVRGIE   81 (307)
Q Consensus         2 p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~   81 (307)
                      ||+.+||++|.+|++.|++++|+++|++|...|+.||..||+.++.+|+.          .+++..+.+++..|.+.|+.
T Consensus       150 ~d~~~~n~li~~~~~~g~~~~A~~~f~~M~~~g~~Pd~~t~~~ll~~~~~----------~~~~~~~~~~~~~~~~~g~~  219 (857)
T PLN03077        150 RDLFSWNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGG----------IPDLARGREVHAHVVRFGFE  219 (857)
T ss_pred             CCeeEHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHhCC----------ccchhhHHHHHHHHHHcCCC
Confidence            78999999999999999999999999999999999999999999999988          55556666666666666666


Q ss_pred             CCHHHHHHHHHHHHhcCCchhHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHhhHHHHH
Q 021791           82 PDVTSFSIVLHVYSRAHKPQLSLDKLNFMKEKGICPTVATYTSVVKCLCSCGRIEDAEELLGEMVRNGVSPSAETYNCFF  161 (307)
Q Consensus        82 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~  161 (307)
                      ||..+++.|+.+|++.|+++.|.++|++|.+    ||..+|+.+|.+|++.|++++|.++|++|...|+.||..||+.++
T Consensus       220 ~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~----~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g~~Pd~~ty~~ll  295 (857)
T PLN03077        220 LDVDVVNALITMYVKCGDVVSARLVFDRMPR----RDCISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTITSVI  295 (857)
T ss_pred             cccchHhHHHHHHhcCCCHHHHHHHHhcCCC----CCcchhHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHH
Confidence            6666667777777766666666666666643    466666666666666666666666666666666666666666666


Q ss_pred             HHHhcCCChhHHHHHHHHHhhcCCCCccHHHHHHHHHHHHhcCcHHHHHHHHHHHhhCCCCCCHHhHHHHHHHHHccCcH
Q 021791          162 KEYRGRKDANGAMKLYRQMKEDDLCVPNIHTYNILIGMFMALNRMDMVREIWNHVKGSELGLDLDSYTMLIHGLCEKQKW  241 (307)
Q Consensus       162 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~  241 (307)
                      .+|++.|+.+.+.+++..+.+.+. .||..+|+.|+.+|++.|++++|.++|+.|..    ||..+|+.+|.+|++.|++
T Consensus       296 ~a~~~~g~~~~a~~l~~~~~~~g~-~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~----~d~~s~n~li~~~~~~g~~  370 (857)
T PLN03077        296 SACELLGDERLGREMHGYVVKTGF-AVDVSVCNSLIQMYLSLGSWGEAEKVFSRMET----KDAVSWTAMISGYEKNGLP  370 (857)
T ss_pred             HHHHhcCChHHHHHHHHHHHHhCC-ccchHHHHHHHHHHHhcCCHHHHHHHHhhCCC----CCeeeHHHHHHHHHhCCCH
Confidence            666666666666666666666665 66666666666666666666666666666642    4666666666666666666


Q ss_pred             HHHHHHHHHHHHcCCCCcHhhHHHHHHHHhhchhHHHHHHHHHHhhhcCCCCCcccCCCCCCCC
Q 021791          242 KEACQYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDEESITFGSEFQNYHFKPY  305 (307)
Q Consensus       242 ~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~  305 (307)
                      ++|.++|++|.+.|+.||..||..++.+|.+.|+.+++.++++.+.+.|+.++..+.+.++..|
T Consensus       371 ~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y  434 (857)
T PLN03077        371 DKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMY  434 (857)
T ss_pred             HHHHHHHHHHHHhCCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHH
Confidence            6666666666666666666666666666666666666666666666666666655555555444

>PRK11788 tetratricopeptide repeat protein; Provisional

Probab=99.92  E-value=4.6e-22  Score=164.27  Aligned_cols=280  Identities=15%  Similarity=0.116  Sum_probs=226.8

Q ss_pred             cHHHHHHHHHHHHhcCchhhHHHHHHHHHhcCCCCc---HHHHHHHHHHHHhhCCCCcchhhHHHHHHHHHHHHHHHhcC
Q 021791            3 NVKMYTSLIYGWCKINRIDMAERFLGEMIERGVEPN---VVTYNVLLNGVCRRASLHPNERFEKTIRNAEKVFDEMRVRG   79 (307)
Q Consensus         3 ~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~---~~~~~~ll~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~   79 (307)
                      ++.++..+...+...|++++|..+++.+...+..++   ...+..+...+..          .|++++|..+|+++.+..
T Consensus        68 ~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~----------~g~~~~A~~~~~~~l~~~  137 (389)
T PRK11788         68 TVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLK----------AGLLDRAEELFLQLVDEG  137 (389)
T ss_pred             cHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHH----------CCCHHHHHHHHHHHHcCC
Confidence            456788888999999999999999998887533222   2457777888888          788899999999998753


Q ss_pred             CCCCHHHHHHHHHHHHhcCCchhHHHHHHHHHHcCCCCc----hhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHh
Q 021791           80 IEPDVTSFSIVLHVYSRAHKPQLSLDKLNFMKEKGICPT----VATYTSVVKCLCSCGRIEDAEELLGEMVRNGVSPSAE  155 (307)
Q Consensus        80 ~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~  155 (307)
                       +++..++..++..+...|++++|.+.++.+.+.+..+.    ...+..+...+.+.|++++|...|+++.+... .+..
T Consensus       138 -~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p-~~~~  215 (389)
T PRK11788        138 -DFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAARALLKKALAADP-QCVR  215 (389)
T ss_pred             -cchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhHCc-CCHH
Confidence             45677899999999999999999999999987654332    22455677788899999999999999987643 2566


Q ss_pred             hHHHHHHHHhcCCChhHHHHHHHHHhhcCCCCccHHHHHHHHHHHHhcCcHHHHHHHHHHHhhCCCCCCHHhHHHHHHHH
Q 021791          156 TYNCFFKEYRGRKDANGAMKLYRQMKEDDLCVPNIHTYNILIGMFMALNRMDMVREIWNHVKGSELGLDLDSYTMLIHGL  235 (307)
Q Consensus       156 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~  235 (307)
                      .+..+...+.+.|++++|.++++++...+. .....++..++.+|...|++++|...++.+...  .|+...+..++..+
T Consensus       216 ~~~~la~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~--~p~~~~~~~la~~~  292 (389)
T PRK11788        216 ASILLGDLALAQGDYAAAIEALERVEEQDP-EYLSEVLPKLMECYQALGDEAEGLEFLRRALEE--YPGADLLLALAQLL  292 (389)
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHHCh-hhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCchHHHHHHHHH
Confidence            778888999999999999999999987642 222467888999999999999999999998876  45666778889999


Q ss_pred             HccCcHHHHHHHHHHHHHcCCCCcHhhHHHHHHHHhh---chhHHHHHHHHHHhhhcCCCCCcccCC
Q 021791          236 CEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQ---SDMLRTWRRLKKKLDEESITFGSEFQN  299 (307)
Q Consensus       236 ~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~---~g~~~~a~~~~~~~~~~~~~~~~~~~~  299 (307)
                      .+.|++++|..+++++.+.  .|+..++..++..+..   .|+.+++..+++++.+.++.+++....
T Consensus       293 ~~~g~~~~A~~~l~~~l~~--~P~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~p~~~c  357 (389)
T PRK11788        293 EEQEGPEAAQALLREQLRR--HPSLRGFHRLLDYHLAEAEEGRAKESLLLLRDLVGEQLKRKPRYRC  357 (389)
T ss_pred             HHhCCHHHHHHHHHHHHHh--CcCHHHHHHHHHHhhhccCCccchhHHHHHHHHHHHHHhCCCCEEC
Confidence            9999999999999998875  6888888888877664   568899999999999988888877543

>PRK11788 tetratricopeptide repeat protein; Provisional

Probab=99.91  E-value=1.5e-20  Score=155.36  Aligned_cols=265  Identities=12%  Similarity=0.052  Sum_probs=221.0

Q ss_pred             HHHHHHhcCchhhHHHHHHHHHhcCCCCcHHHHHHHHHHHHhhCCCCcchhhHHHHHHHHHHHHHHHhcCCCCC---HHH
Q 021791           10 LIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPNERFEKTIRNAEKVFDEMRVRGIEPD---VTS   86 (307)
Q Consensus        10 li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~   86 (307)
                      ....+...|++++|...|.++.+.+ +.+..++..+...+..          .|++++|..+++.+...+..++   ...
T Consensus        41 ~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~----------~g~~~~A~~~~~~~l~~~~~~~~~~~~~  109 (389)
T PRK11788         41 KGLNFLLNEQPDKAIDLFIEMLKVD-PETVELHLALGNLFRR----------RGEVDRAIRIHQNLLSRPDLTREQRLLA  109 (389)
T ss_pred             HHHHHHhcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHH----------cCcHHHHHHHHHHHhcCCCCCHHHHHHH
Confidence            3455678899999999999999873 2355688888888888          8889999999999987642222   356


Q ss_pred             HHHHHHHHHhcCCchhHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCH----hhHHHHHH
Q 021791           87 FSIVLHVYSRAHKPQLSLDKLNFMKEKGICPTVATYTSVVKCLCSCGRIEDAEELLGEMVRNGVSPSA----ETYNCFFK  162 (307)
Q Consensus        87 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~  162 (307)
                      +..+...|...|++++|.++|+++.+.. +.+..++..++..+.+.|++++|.+.++.+.+.+..+..    ..+..+..
T Consensus       110 ~~~La~~~~~~g~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~  188 (389)
T PRK11788        110 LQELGQDYLKAGLLDRAEELFLQLVDEG-DFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQ  188 (389)
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHcCC-cchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHH
Confidence            7889999999999999999999998764 347788999999999999999999999999886544322    24566777


Q ss_pred             HHhcCCChhHHHHHHHHHhhcCCCCccHHHHHHHHHHHHhcCcHHHHHHHHHHHhhCCCCCCHHhHHHHHHHHHccCcHH
Q 021791          163 EYRGRKDANGAMKLYRQMKEDDLCVPNIHTYNILIGMFMALNRMDMVREIWNHVKGSELGLDLDSYTMLIHGLCEKQKWK  242 (307)
Q Consensus       163 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~  242 (307)
                      .+.+.|++++|...++++.+..  +.+...+..+...+.+.|++++|.+.++++...+......+++.++.+|...|+++
T Consensus       189 ~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~  266 (389)
T PRK11788        189 QALARGDLDAARALLKKALAAD--PQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEA  266 (389)
T ss_pred             HHHhCCCHHHHHHHHHHHHhHC--cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHH
Confidence            8899999999999999998864  45677888899999999999999999999997643323467889999999999999


Q ss_pred             HHHHHHHHHHHcCCCCcHhhHHHHHHHHhhchhHHHHHHHHHHhhhcC
Q 021791          243 EACQYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDEES  290 (307)
Q Consensus       243 ~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~  290 (307)
                      +|...++++.+.  .|+...+..+...+.+.|++++|..+++++.+..
T Consensus       267 ~A~~~l~~~~~~--~p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~~  312 (389)
T PRK11788        267 EGLEFLRRALEE--YPGADLLLALAQLLEEQEGPEAAQALLREQLRRH  312 (389)
T ss_pred             HHHHHHHHHHHh--CCCchHHHHHHHHHHHhCCHHHHHHHHHHHHHhC
Confidence            999999999876  5777777888999999999999999999887653

>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein

Probab=99.88  E-value=3.2e-19  Score=162.58  Aligned_cols=268  Identities=9%  Similarity=0.013  Sum_probs=163.2

Q ss_pred             cHHHHHHHHHHHHhcCchhhHHHHHHHHHhcCCCCcHHHHHHHHHHHHhhCCCCcchhhHHHHHHHHHHHHHHHhcCCCC
Q 021791            3 NVKMYTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPNERFEKTIRNAEKVFDEMRVRGIEP   82 (307)
Q Consensus         3 ~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~   82 (307)
                      +...|..+..++...|++++|.+.|+.+.+.. +.+...+..+..++..          .+++++|...|+++.+.. +.
T Consensus       600 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~----------~~~~~~A~~~~~~~~~~~-~~  667 (899)
T TIGR02917       600 SPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQ-PDSALALLLLADAYAV----------MKNYAKAITSLKRALELK-PD  667 (899)
T ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHH----------cCCHHHHHHHHHHHHhcC-CC
Confidence            56778888888888888888888888887653 3355667777777777          666777777777776653 33


Q ss_pred             CHHHHHHHHHHHHhcCCchhHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHhhHHHHHH
Q 021791           83 DVTSFSIVLHVYSRAHKPQLSLDKLNFMKEKGICPTVATYTSVVKCLCSCGRIEDAEELLGEMVRNGVSPSAETYNCFFK  162 (307)
Q Consensus        83 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~  162 (307)
                      +..++..+...+...|++++|.++++.+.+.+. .+...+..+...+...|++++|...|+.+...+  |+..++..+..
T Consensus       668 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~l~~  744 (899)
T TIGR02917       668 NTEAQIGLAQLLLAAKRTESAKKIAKSLQKQHP-KAALGFELEGDLYLRQKDYPAAIQAYRKALKRA--PSSQNAIKLHR  744 (899)
T ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCc-CChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC--CCchHHHHHHH
Confidence            456666677777777777777777776666542 355566666666666666666666666666543  23345555566


Q ss_pred             HHhcCCChhHHHHHHHHHhhcCCCCccHHHHHHHHHHHHhcCcHHHHHHHHHHHhhCCCCCCHHhHHHHHHHHHccCcHH
Q 021791          163 EYRGRKDANGAMKLYRQMKEDDLCVPNIHTYNILIGMFMALNRMDMVREIWNHVKGSELGLDLDSYTMLIHGLCEKQKWK  242 (307)
Q Consensus       163 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~  242 (307)
                      .+.+.|++++|...+..+.+..  +.+..++..+...|...|++++|.+.++.+.+.. +.+...++.+...+...|+ .
T Consensus       745 ~~~~~g~~~~A~~~~~~~l~~~--~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~-~  820 (899)
T TIGR02917       745 ALLASGNTAEAVKTLEAWLKTH--PNDAVLRTALAELYLAQKDYDKAIKHYRTVVKKA-PDNAVVLNNLAWLYLELKD-P  820 (899)
T ss_pred             HHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCc-H
Confidence            6666666666666666665553  4455566666666666666666666666665543 2244455555555555555 4


Q ss_pred             HHHHHHHHHHHcCCCCcHhhHHHHHHHHhhchhHHHHHHHHHHhhhcC
Q 021791          243 EACQYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDEES  290 (307)
Q Consensus       243 ~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~  290 (307)
                      +|+..++++.+.. +-+..++..+...+...|++++|.++++++.+.+
T Consensus       821 ~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~  867 (899)
T TIGR02917       821 RALEYAEKALKLA-PNIPAILDTLGWLLVEKGEADRALPLLRKAVNIA  867 (899)
T ss_pred             HHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence            4555555554431 1122333444444455555555555555554443

This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.

>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein

Probab=99.87  E-value=1.4e-18  Score=158.43  Aligned_cols=221  Identities=7%  Similarity=0.017  Sum_probs=134.2

Q ss_pred             HHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCchhHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCChHHHHHH
Q 021791           62 EKTIRNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHKPQLSLDKLNFMKEKGICPTVATYTSVVKCLCSCGRIEDAEEL  141 (307)
Q Consensus        62 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~  141 (307)
                      .|++++|..+++.+.+.. +.+...|..+..++...|++++|...|+.+.+... .+...+..+...+...|++++|..+
T Consensus       580 ~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~  657 (899)
T TIGR02917       580 KGQLKKALAILNEAADAA-PDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQP-DSALALLLLADAYAVMKNYAKAITS  657 (899)
T ss_pred             CCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CChHHHHHHHHHHHHcCCHHHHHHH
Confidence            455556666666655432 34555666666666666666666666666655432 2455566666666666666666666


Q ss_pred             HHHHHhCCCCCCHhhHHHHHHHHhcCCChhHHHHHHHHHhhcCCCCccHHHHHHHHHHHHhcCcHHHHHHHHHHHhhCCC
Q 021791          142 LGEMVRNGVSPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDDLCVPNIHTYNILIGMFMALNRMDMVREIWNHVKGSEL  221 (307)
Q Consensus       142 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~  221 (307)
                      ++++..... .+..++..+...+...|++++|..+++.+....  +.+...+..+...+...|++++|.+.++.+...+ 
T Consensus       658 ~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~-  733 (899)
T TIGR02917       658 LKRALELKP-DNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQH--PKAALGFELEGDLYLRQKDYPAAIQAYRKALKRA-  733 (899)
T ss_pred             HHHHHhcCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--cCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC-
Confidence            666655432 245566666666666666666666666666554  4455566666666666666666666666666543 


Q ss_pred             CCCHHhHHHHHHHHHccCcHHHHHHHHHHHHHcCCCCcHhhHHHHHHHHhhchhHHHHHHHHHHhhhcC
Q 021791          222 GLDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDEES  290 (307)
Q Consensus       222 ~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~  290 (307)
                       |+..++..+..++.+.|++++|...++++.+.. +.+...+..+...|...|+.++|.+.++++.+..
T Consensus       734 -~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~  800 (899)
T TIGR02917       734 -PSSQNAIKLHRALLASGNTAEAVKTLEAWLKTH-PNDAVLRTALAELYLAQKDYDKAIKHYRTVVKKA  800 (899)
T ss_pred             -CCchHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhC
Confidence             333555556666666666666666666666542 3445566666666666777777777776665543

This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.

>PRK15174 Vi polysaccharide export protein VexE; Provisional

Probab=99.82  E-value=2.4e-16  Score=137.12  Aligned_cols=267  Identities=9%  Similarity=0.001  Sum_probs=155.7

Q ss_pred             HHHHHHHHHHHhcCchhhHHHHHHHHHhcCCCCcHHHHHHHHHHHHhhCCCCcchhhHHHHHHHHHHHHHHHhcCCCCCH
Q 021791            5 KMYTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPNERFEKTIRNAEKVFDEMRVRGIEPDV   84 (307)
Q Consensus         5 ~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~   84 (307)
                      ..+..+...+...|++++|.+.+++..+.. +.+...+..+...+..          .|++++|...++.+...... +.
T Consensus       111 ~a~~~la~~l~~~g~~~~Ai~~l~~Al~l~-P~~~~a~~~la~~l~~----------~g~~~eA~~~~~~~~~~~P~-~~  178 (656)
T PRK15174        111 EDVLLVASVLLKSKQYATVADLAEQAWLAF-SGNSQIFALHLRTLVL----------MDKELQAISLARTQAQEVPP-RG  178 (656)
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHH----------CCChHHHHHHHHHHHHhCCC-CH
Confidence            344445555555555555555555555431 1123344444444444          55556666666555444211 22


Q ss_pred             HHHHHHHHHHHhcCCchhHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHH
Q 021791           85 TSFSIVLHVYSRAHKPQLSLDKLNFMKEKGICPTVATYTSVVKCLCSCGRIEDAEELLGEMVRNGVSPSAETYNCFFKEY  164 (307)
Q Consensus        85 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~  164 (307)
                      ..+..+ ..+...|++++|...++.+.+....++......+...+...|++++|...+++....... +...+..+...+
T Consensus       179 ~a~~~~-~~l~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~p~-~~~~~~~Lg~~l  256 (656)
T PRK15174        179 DMIATC-LSFLNKSRLPEDHDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARGLD-GAALRRSLGLAY  256 (656)
T ss_pred             HHHHHH-HHHHHcCCHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHH
Confidence            222222 235556666666666666555432233334444455666677777777777776655432 455666666777


Q ss_pred             hcCCChhH----HHHHHHHHhhcCCCCccHHHHHHHHHHHHhcCcHHHHHHHHHHHhhCCCCCCHHhHHHHHHHHHccCc
Q 021791          165 RGRKDANG----AMKLYRQMKEDDLCVPNIHTYNILIGMFMALNRMDMVREIWNHVKGSELGLDLDSYTMLIHGLCEKQK  240 (307)
Q Consensus       165 ~~~~~~~~----a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~  240 (307)
                      ...|++++    |...+++.....  +.+...+..+...+...|++++|...++........ +...+..+..++...|+
T Consensus       257 ~~~G~~~eA~~~A~~~~~~Al~l~--P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~-~~~a~~~La~~l~~~G~  333 (656)
T PRK15174        257 YQSGRSREAKLQAAEHWRHALQFN--SDNVRIVTLYADALIRTGQNEKAIPLLQQSLATHPD-LPYVRAMYARALRQVGQ  333 (656)
T ss_pred             HHcCCchhhHHHHHHHHHHHHhhC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCC
Confidence            77777764    677777776654  455667777777777777777777777777765322 45556666777777777


Q ss_pred             HHHHHHHHHHHHHcCCCCcHh-hHHHHHHHHhhchhHHHHHHHHHHhhhcC
Q 021791          241 WKEACQYFVEMIEKGLLPQKV-TFETLYRGLIQSDMLRTWRRLKKKLDEES  290 (307)
Q Consensus       241 ~~~a~~~~~~~~~~~~~p~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~~  290 (307)
                      +++|...++++...  .|+.. .+..+..++...|+.++|...+++..+..
T Consensus       334 ~~eA~~~l~~al~~--~P~~~~~~~~~a~al~~~G~~deA~~~l~~al~~~  382 (656)
T PRK15174        334 YTAASDEFVQLARE--KGVTSKWNRYAAAALLQAGKTSEAESVFEHYIQAR  382 (656)
T ss_pred             HHHHHHHHHHHHHh--CccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence            77777777777754  34432 23334556677777777777777765443

>PRK15174 Vi polysaccharide export protein VexE; Provisional

Probab=99.81  E-value=4.7e-16  Score=135.29  Aligned_cols=270  Identities=8%  Similarity=-0.006  Sum_probs=212.9

Q ss_pred             HHHHHHHHHHHHhcCchhhHHHHHHHHHhcCCCCcHHHHHHHHHHHHhhCCCCcchhhHHHHHHHHHHHHHHHhcCCCCC
Q 021791            4 VKMYTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPNERFEKTIRNAEKVFDEMRVRGIEPD   83 (307)
Q Consensus         4 ~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~   83 (307)
                      ...+..++.+....|+++.|.+.|+++.... +.+...+..+...+..          .|++++|...++++.+.. +.+
T Consensus        76 ~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~-P~~~~a~~~la~~l~~----------~g~~~~Ai~~l~~Al~l~-P~~  143 (656)
T PRK15174         76 RDLLRRWVISPLASSQPDAVLQVVNKLLAVN-VCQPEDVLLVASVLLK----------SKQYATVADLAEQAWLAF-SGN  143 (656)
T ss_pred             hhHHHHHhhhHhhcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHH----------cCCHHHHHHHHHHHHHhC-CCc
Confidence            3455566677778899999999999988762 2245567777777777          788899999999988762 345


Q ss_pred             HHHHHHHHHHHHhcCCchhHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHhhHHHHHHH
Q 021791           84 VTSFSIVLHVYSRAHKPQLSLDKLNFMKEKGICPTVATYTSVVKCLCSCGRIEDAEELLGEMVRNGVSPSAETYNCFFKE  163 (307)
Q Consensus        84 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~  163 (307)
                      ...+..+...+...|++++|...++.+...... +...+..+ ..+...|++++|...++.+......++...+..+...
T Consensus       144 ~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P~-~~~a~~~~-~~l~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~  221 (656)
T PRK15174        144 SQIFALHLRTLVLMDKELQAISLARTQAQEVPP-RGDMIATC-LSFLNKSRLPEDHDLARALLPFFALERQESAGLAVDT  221 (656)
T ss_pred             HHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCC-CHHHHHHH-HHHHHcCCHHHHHHHHHHHHhcCCCcchhHHHHHHHH
Confidence            678888899999999999999999888766433 33333333 3478889999999999998776444445555666778


Q ss_pred             HhcCCChhHHHHHHHHHhhcCCCCccHHHHHHHHHHHHhcCcHHH----HHHHHHHHhhCCCCCCHHhHHHHHHHHHccC
Q 021791          164 YRGRKDANGAMKLYRQMKEDDLCVPNIHTYNILIGMFMALNRMDM----VREIWNHVKGSELGLDLDSYTMLIHGLCEKQ  239 (307)
Q Consensus       164 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~----a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g  239 (307)
                      +...|++++|...+++.....  +.+...+..+...+...|++++    |...++....... .+...+..+...+...|
T Consensus       222 l~~~g~~~eA~~~~~~al~~~--p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~P-~~~~a~~~lg~~l~~~g  298 (656)
T PRK15174        222 LCAVGKYQEAIQTGESALARG--LDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQFNS-DNVRIVTLYADALIRTG  298 (656)
T ss_pred             HHHCCCHHHHHHHHHHHHhcC--CCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhCC-CCHHHHHHHHHHHHHCC
Confidence            889999999999999998875  5677888889999999999986    7999999888643 36778999999999999


Q ss_pred             cHHHHHHHHHHHHHcCCCCcHhhHHHHHHHHhhchhHHHHHHHHHHhhhcCC
Q 021791          240 KWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDEESI  291 (307)
Q Consensus       240 ~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~  291 (307)
                      ++++|...+++.++.. +.+...+..+..++.+.|++++|...++++.+.+.
T Consensus       299 ~~~eA~~~l~~al~l~-P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~P  349 (656)
T PRK15174        299 QNEKAIPLLQQSLATH-PDLPYVRAMYARALRQVGQYTAASDEFVQLAREKG  349 (656)
T ss_pred             CHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCc
Confidence            9999999999999763 23455677788899999999999999999876543

>KOG4422 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.81  E-value=1.5e-16  Score=123.90  Aligned_cols=204  Identities=19%  Similarity=0.289  Sum_probs=157.0

Q ss_pred             cHHHHHHHHHHHHhcCchhhHHHHHHHHHhcCCCCcHHHHHHHHHHHHhhCCCCcchhhHHHHHHHHHHHHHHHhcCCCC
Q 021791            3 NVKMYTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPNERFEKTIRNAEKVFDEMRVRGIEP   82 (307)
Q Consensus         3 ~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~   82 (307)
                      +..+|..+|.+.++--..++|.+++++-.....+.+..+||.+|.+..-              ....+++.+|.+..++|
T Consensus       206 T~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~--------------~~~K~Lv~EMisqkm~P  271 (625)
T KOG4422|consen  206 TDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSY--------------SVGKKLVAEMISQKMTP  271 (625)
T ss_pred             CchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHh--------------hccHHHHHHHHHhhcCC
Confidence            5679999999999999999999999999988889999999999987655              23378899999999999


Q ss_pred             CHHHHHHHHHHHHhcCCchh----HHHHHHHHHHcCCCCchhhHHHHHHHHHhcCChHH-HHHHHHHHHhC----CCCC-
Q 021791           83 DVTSFSIVLHVYSRAHKPQL----SLDKLNFMKEKGICPTVATYTSVVKCLCSCGRIED-AEELLGEMVRN----GVSP-  152 (307)
Q Consensus        83 ~~~~~~~ll~~~~~~~~~~~----a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~-a~~~~~~~~~~----~~~~-  152 (307)
                      |..|||+++++.++.|+++.    |.+++.+|++.|+.|+..+|..+|..+.+.++..+ |..++.++...    .++| 
T Consensus       272 nl~TfNalL~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~ltGK~fkp~  351 (625)
T KOG4422|consen  272 NLFTFNALLSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNSLTGKTFKPI  351 (625)
T ss_pred             chHhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHhhccCcccCC
Confidence            99999999999999998764    67788999999999999999999999998888755 44444444432    2222 


Q ss_pred             ---CHhhHHHHHHHHhcCCChhHHHHHHHHHhhcCC-----------------------------------------CCc
Q 021791          153 ---SAETYNCFFKEYRGRKDANGAMKLYRQMKEDDL-----------------------------------------CVP  188 (307)
Q Consensus       153 ---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-----------------------------------------~~~  188 (307)
                         |...|...|..|.+..+.+-|.++..-+.....                                         .-|
T Consensus       352 ~p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~~~Y~~lVP~~y~p  431 (625)
T KOG4422|consen  352 TPTDNKFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTLKWYEDLVPSAYFP  431 (625)
T ss_pred             CCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccceecC
Confidence               334556667777666666666555443332211                                         245


Q ss_pred             cHHHHHHHHHHHHhcCcHHHHHHHHHHHhhCC
Q 021791          189 NIHTYNILIGMFMALNRMDMVREIWNHVKGSE  220 (307)
Q Consensus       189 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~  220 (307)
                      +..+...++++....|.++-..++|..+...|
T Consensus       432 ~~~~m~~~lrA~~v~~~~e~ipRiw~D~~~~g  463 (625)
T KOG4422|consen  432 HSQTMIHLLRALDVANRLEVIPRIWKDSKEYG  463 (625)
T ss_pred             CchhHHHHHHHHhhcCcchhHHHHHHHHHHhh
Confidence            66666777787777888888888887776655

>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B

Probab=99.78  E-value=2.6e-18  Score=135.11  Aligned_cols=262  Identities=16%  Similarity=0.169  Sum_probs=115.5

Q ss_pred             HHHHHHHhcCchhhHHHHHHHHHhcCCCCcHHHHHHHHHHHHhhCCCCcchhhHHHHHHHHHHHHHHHhcCCCCCHHHHH
Q 021791            9 SLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPNERFEKTIRNAEKVFDEMRVRGIEPDVTSFS   88 (307)
Q Consensus         9 ~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~   88 (307)
                      .+...+.+.|++++|++++........+|+...|-.++..++..         .++.+.|.+.++++...+.. +...+.
T Consensus        13 ~~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~---------~~~~~~A~~ay~~l~~~~~~-~~~~~~   82 (280)
T PF13429_consen   13 RLARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWS---------LGDYDEAIEAYEKLLASDKA-NPQDYE   82 (280)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccc---------cccccccccccccccccccc-cccccc
Confidence            45677889999999999997765553345555554444433332         88999999999999887533 666777


Q ss_pred             HHHHHHHhcCCchhHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCChHHHHHHHHHHHhCC-CCCCHhhHHHHHHHHhcC
Q 021791           89 IVLHVYSRAHKPQLSLDKLNFMKEKGICPTVATYTSVVKCLCSCGRIEDAEELLGEMVRNG-VSPSAETYNCFFKEYRGR  167 (307)
Q Consensus        89 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~  167 (307)
                      .++.. ...+++++|.+++....+..  ++...+...+..+.+.++++++..+++.+.... .+.+...|..+...+.+.
T Consensus        83 ~l~~l-~~~~~~~~A~~~~~~~~~~~--~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~  159 (280)
T PF13429_consen   83 RLIQL-LQDGDPEEALKLAEKAYERD--GDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQL  159 (280)
T ss_dssp             --------------------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHC
T ss_pred             ccccc-cccccccccccccccccccc--cccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHc
Confidence            78877 79999999999998876653  466778889999999999999999999987542 345778888999999999


Q ss_pred             CChhHHHHHHHHHhhcCCCCccHHHHHHHHHHHHhcCcHHHHHHHHHHHhhCCCCCCHHhHHHHHHHHHccCcHHHHHHH
Q 021791          168 KDANGAMKLYRQMKEDDLCVPNIHTYNILIGMFMALNRMDMVREIWNHVKGSELGLDLDSYTMLIHGLCEKQKWKEACQY  247 (307)
Q Consensus       168 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~  247 (307)
                      |+.++|.+.+++..+..  |.|......++..+...|+.+++.++++...... +.|...+..+..+|...|+.++|+..
T Consensus       160 G~~~~A~~~~~~al~~~--P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~-~~~~~~~~~la~~~~~lg~~~~Al~~  236 (280)
T PF13429_consen  160 GDPDKALRDYRKALELD--PDDPDARNALAWLLIDMGDYDEAREALKRLLKAA-PDDPDLWDALAAAYLQLGRYEEALEY  236 (280)
T ss_dssp             CHHHHHHHHHHHHHHH---TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH--HTSCCHCHHHHHHHHHHT-HHHHHHH
T ss_pred             CCHHHHHHHHHHHHHcC--CCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC-cCHHHHHHHHHHHhcccccccccccc
Confidence            99999999999999985  5578889999999999999999999998887763 34666788999999999999999999


Q ss_pred             HHHHHHcCCCCcHhhHHHHHHHHhhchhHHHHHHHHHHhh
Q 021791          248 FVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLD  287 (307)
Q Consensus       248 ~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~  287 (307)
                      |++.... .+.|+.+...+..++...|+.++|.++.++.-
T Consensus       237 ~~~~~~~-~p~d~~~~~~~a~~l~~~g~~~~A~~~~~~~~  275 (280)
T PF13429_consen  237 LEKALKL-NPDDPLWLLAYADALEQAGRKDEALRLRRQAL  275 (280)
T ss_dssp             HHHHHHH-STT-HHHHHHHHHHHT----------------
T ss_pred             ccccccc-cccccccccccccccccccccccccccccccc
Confidence            9999886 24578888999999999999999999988764

>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70)

Probab=99.78  E-value=8.3e-15  Score=127.65  Aligned_cols=188  Identities=7%  Similarity=-0.060  Sum_probs=144.4

Q ss_pred             CchhHHHHHHHHHHcC-C-CCchhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHhcCCChhHHHHH
Q 021791           99 KPQLSLDKLNFMKEKG-I-CPTVATYTSVVKCLCSCGRIEDAEELLGEMVRNGVSPSAETYNCFFKEYRGRKDANGAMKL  176 (307)
Q Consensus        99 ~~~~a~~~~~~~~~~~-~-~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~  176 (307)
                      ++++|.+.|+...+.+ . +.....+..+...+...|++++|...+++....... +...|..+...+...|++++|...
T Consensus       309 ~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~P~-~~~~~~~la~~~~~~g~~~eA~~~  387 (615)
T TIGR00990       309 SYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELDPR-VTQSYIKRASMNLELGDPDKAEED  387 (615)
T ss_pred             hHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-cHHHHHHHHHHHHHCCCHHHHHHH
Confidence            3444555555554432 1 123445666777777888999999999888876432 456778888888899999999999


Q ss_pred             HHHHhhcCCCCccHHHHHHHHHHHHhcCcHHHHHHHHHHHhhCCCCCCHHhHHHHHHHHHccCcHHHHHHHHHHHHHcCC
Q 021791          177 YRQMKEDDLCVPNIHTYNILIGMFMALNRMDMVREIWNHVKGSELGLDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGL  256 (307)
Q Consensus       177 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~  256 (307)
                      |++..+..  +.+..++..+...+...|++++|...|+....... .+...+..+..++.+.|++++|+..|++.++. .
T Consensus       388 ~~~al~~~--p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~P-~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~-~  463 (615)
T TIGR00990       388 FDKALKLN--SEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDP-DFIFSHIQLGVTQYKEGSIASSMATFRRCKKN-F  463 (615)
T ss_pred             HHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCc-cCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-C
Confidence            99888775  56678888899999999999999999999888642 25677888888899999999999999998865 2


Q ss_pred             CCcHhhHHHHHHHHhhchhHHHHHHHHHHhhhcCC
Q 021791          257 LPQKVTFETLYRGLIQSDMLRTWRRLKKKLDEESI  291 (307)
Q Consensus       257 ~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~  291 (307)
                      +-+...+..+...+...|++++|...+++..+...
T Consensus       464 P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p  498 (615)
T TIGR00990       464 PEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEK  498 (615)
T ss_pred             CCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCC
Confidence            33467788888899999999999999998766543

>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70)

Probab=99.76  E-value=4.5e-15  Score=129.27  Aligned_cols=258  Identities=11%  Similarity=0.019  Sum_probs=207.3

Q ss_pred             cCchhhHHHHHHHHHhcC-CCC-cHHHHHHHHHHHHhhCCCCcchhhHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHH
Q 021791           17 INRIDMAERFLGEMIERG-VEP-NVVTYNVLLNGVCRRASLHPNERFEKTIRNAEKVFDEMRVRGIEPDVTSFSIVLHVY   94 (307)
Q Consensus        17 ~g~~~~a~~~~~~~~~~~-~~p-~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~   94 (307)
                      .+++++|.+.|+.....+ ..| ....|..+...+..          .|++++|+..|++..+.. +.+...|..+...+
T Consensus       307 ~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~----------~g~~~eA~~~~~kal~l~-P~~~~~~~~la~~~  375 (615)
T TIGR00990       307 DESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCL----------KGKHLEALADLSKSIELD-PRVTQSYIKRASMN  375 (615)
T ss_pred             hhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHH----------cCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHH
Confidence            367899999999998764 234 34567777777777          788999999999998763 22466888899999


Q ss_pred             HhcCCchhHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHhcCCChhHHH
Q 021791           95 SRAHKPQLSLDKLNFMKEKGICPTVATYTSVVKCLCSCGRIEDAEELLGEMVRNGVSPSAETYNCFFKEYRGRKDANGAM  174 (307)
Q Consensus        95 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~  174 (307)
                      ...|++++|...|+...+... .+..+|..+...+...|++++|...|++....... +...+..+...+.+.|++++|+
T Consensus       376 ~~~g~~~eA~~~~~~al~~~p-~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~P~-~~~~~~~la~~~~~~g~~~eA~  453 (615)
T TIGR00990       376 LELGDPDKAEEDFDKALKLNS-EDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPD-FIFSHIQLGVTQYKEGSIASSM  453 (615)
T ss_pred             HHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCcc-CHHHHHHHHHHHHHCCCHHHHH
Confidence            999999999999999988753 36788999999999999999999999999987543 5677888889999999999999


Q ss_pred             HHHHHHhhcCCCCccHHHHHHHHHHHHhcCcHHHHHHHHHHHhhCCCCCCHH------hHHHHHHHHHccCcHHHHHHHH
Q 021791          175 KLYRQMKEDDLCVPNIHTYNILIGMFMALNRMDMVREIWNHVKGSELGLDLD------SYTMLIHGLCEKQKWKEACQYF  248 (307)
Q Consensus       175 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~------~~~~li~~~~~~g~~~~a~~~~  248 (307)
                      ..+++.....  +.+...++.+...+...|++++|.+.|+.........+..      .++.....+...|++++|..++
T Consensus       454 ~~~~~al~~~--P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~~~~~~~eA~~~~  531 (615)
T TIGR00990       454 ATFRRCKKNF--PEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKALALFQWKQDFIEAENLC  531 (615)
T ss_pred             HHHHHHHHhC--CCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHHHHHHHHHHHHhhhHHHHHHHH
Confidence            9999998764  5668889999999999999999999999988763221111      1222233344569999999999


Q ss_pred             HHHHHcCCCCcHhhHHHHHHHHhhchhHHHHHHHHHHhhhcC
Q 021791          249 VEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDEES  290 (307)
Q Consensus       249 ~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~  290 (307)
                      ++.++.. +.+...+..+...+.+.|++++|.+.+++..+..
T Consensus       532 ~kAl~l~-p~~~~a~~~la~~~~~~g~~~eAi~~~e~A~~l~  572 (615)
T TIGR00990       532 EKALIID-PECDIAVATMAQLLLQQGDVDEALKLFERAAELA  572 (615)
T ss_pred             HHHHhcC-CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHh
Confidence            9988763 2334568889999999999999999999876544

>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=99.73  E-value=5.3e-15  Score=120.45  Aligned_cols=279  Identities=15%  Similarity=0.113  Sum_probs=141.5

Q ss_pred             HHHHHHHHHHHHhcCchhhHHHHHHHHHhcCCCC-cHHHHHHHHHHHHhhCCCCcchhh---------------------
Q 021791            4 VKMYTSLIYGWCKINRIDMAERFLGEMIERGVEP-NVVTYNVLLNGVCRRASLHPNERF---------------------   61 (307)
Q Consensus         4 ~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p-~~~~~~~ll~~~~~~~~~~~~~~~---------------------   61 (307)
                      ..+|..+...+...|++++|+.++..+++.  +| .+..|..+..++...|+...+...                     
T Consensus       116 ae~ysn~aN~~kerg~~~~al~~y~~aiel--~p~fida~inla~al~~~~~~~~a~~~~~~alqlnP~l~ca~s~lgnL  193 (966)
T KOG4626|consen  116 AEAYSNLANILKERGQLQDALALYRAAIEL--KPKFIDAYINLAAALVTQGDLELAVQCFFEALQLNPDLYCARSDLGNL  193 (966)
T ss_pred             HHHHHHHHHHHHHhchHHHHHHHHHHHHhc--CchhhHHHhhHHHHHHhcCCCcccHHHHHHHHhcCcchhhhhcchhHH
Confidence            457888888888999999999999988876  33 456777777777776665544221                     


Q ss_pred             -------------------------------------HHHHHHHHHHHHHHHhcCCCCC-HHHHHHHHHHHHhcCCchhH
Q 021791           62 -------------------------------------EKTIRNAEKVFDEMRVRGIEPD-VTSFSIVLHVYSRAHKPQLS  103 (307)
Q Consensus        62 -------------------------------------~~~~~~a~~~~~~~~~~~~~~~-~~~~~~ll~~~~~~~~~~~a  103 (307)
                                                           .|++..|++.|++..+.  .|+ ...|..|...|...+.++.|
T Consensus       194 lka~Grl~ea~~cYlkAi~~qp~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkl--dP~f~dAYiNLGnV~ke~~~~d~A  271 (966)
T KOG4626|consen  194 LKAEGRLEEAKACYLKAIETQPCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKL--DPNFLDAYINLGNVYKEARIFDRA  271 (966)
T ss_pred             HHhhcccchhHHHHHHHHhhCCceeeeehhcchHHhhcchHHHHHHHHHHhhcC--CCcchHHHhhHHHHHHHHhcchHH
Confidence                                                 34444555555554443  222 22344444444444444444


Q ss_pred             HHHHHHHHHcCC--------------------------------CC-chhhHHHHHHHHHhcCChHHHHHHHHHHHhCCC
Q 021791          104 LDKLNFMKEKGI--------------------------------CP-TVATYTSVVKCLCSCGRIEDAEELLGEMVRNGV  150 (307)
Q Consensus       104 ~~~~~~~~~~~~--------------------------------~~-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~  150 (307)
                      ...|.+......                                .| =...|+.|.+++...|++.+|+..|.+......
T Consensus       272 vs~Y~rAl~lrpn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~p  351 (966)
T KOG4626|consen  272 VSCYLRALNLRPNHAVAHGNLACIYYEQGLLDLAIDTYKRALELQPNFPDAYNNLANALKDKGSVTEAVDCYNKALRLCP  351 (966)
T ss_pred             HHHHHHHHhcCCcchhhccceEEEEeccccHHHHHHHHHHHHhcCCCchHHHhHHHHHHHhccchHHHHHHHHHHHHhCC
Confidence            444333332211                                11 123344444444444444444444444444322


Q ss_pred             CCCHhhHHHHHHHHhcCCChhHHHHHHHHHhhcCCCCccHHHHHHHHHHHHhcCcHHHHHHHHHHHhhCCCCCC-HHhHH
Q 021791          151 SPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDDLCVPNIHTYNILIGMFMALNRMDMVREIWNHVKGSELGLD-LDSYT  229 (307)
Q Consensus       151 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~  229 (307)
                      . .....+.|...|...|.+++|.++|....+..  +--....+.|...|-+.|++++|+..+++....  .|+ ..+|+
T Consensus       352 ~-hadam~NLgni~~E~~~~e~A~~ly~~al~v~--p~~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI--~P~fAda~~  426 (966)
T KOG4626|consen  352 N-HADAMNNLGNIYREQGKIEEATRLYLKALEVF--PEFAAAHNNLASIYKQQGNLDDAIMCYKEALRI--KPTFADALS  426 (966)
T ss_pred             c-cHHHHHHHHHHHHHhccchHHHHHHHHHHhhC--hhhhhhhhhHHHHHHhcccHHHHHHHHHHHHhc--CchHHHHHH
Confidence            1 23344444444444444444444444444432  222334445555555555555555555554432  333 23455


Q ss_pred             HHHHHHHccCcHHHHHHHHHHHHHcCCCCc-HhhHHHHHHHHhhchhHHHHHHHHHHhhhcCCCC
Q 021791          230 MLIHGLCEKQKWKEACQYFVEMIEKGLLPQ-KVTFETLYRGLIQSDMLRTWRRLKKKLDEESITF  293 (307)
Q Consensus       230 ~li~~~~~~g~~~~a~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~  293 (307)
                      .+-..|-..|+.+.|+..+.+.++.  .|. ...++.|...|..+|++.+|.+-++...+....+
T Consensus       427 NmGnt~ke~g~v~~A~q~y~rAI~~--nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLklkPDf  489 (966)
T KOG4626|consen  427 NMGNTYKEMGDVSAAIQCYTRAIQI--NPTFAEAHSNLASIYKDSGNIPEAIQSYRTALKLKPDF  489 (966)
T ss_pred             hcchHHHHhhhHHHHHHHHHHHHhc--CcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHccCCCC
Confidence            5555555555555555555555532  232 2345555556666666666666666555444433

>KOG4422 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.72  E-value=6.5e-15  Score=114.91  Aligned_cols=251  Identities=18%  Similarity=0.344  Sum_probs=204.9

Q ss_pred             CCcHHHHHHHHHHHHhhCCCCcchhhHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCchhHHHHHHHHHHcCC
Q 021791           36 EPNVVTYNVLLNGVCRRASLHPNERFEKTIRNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHKPQLSLDKLNFMKEKGI  115 (307)
Q Consensus        36 ~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~  115 (307)
                      +.+..+|.++|.+.++          -...+.|.+++++-.....+.+..+||.+|.+-+-..+    .+++.+|....+
T Consensus       204 PKT~et~s~mI~Gl~K----------~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~~~----K~Lv~EMisqkm  269 (625)
T KOG4422|consen  204 PKTDETVSIMIAGLCK----------FSSLERARELYKEHRAAKGKVYREAFNGLIGASSYSVG----KKLVAEMISQKM  269 (625)
T ss_pred             CCCchhHHHHHHHHHH----------HHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhhcc----HHHHHHHHHhhc
Confidence            4477899999999999          88899999999999888889999999999987665433    789999999999


Q ss_pred             CCchhhHHHHHHHHHhcCChHH----HHHHHHHHHhCCCCCCHhhHHHHHHHHhcCCChhH-HHHHHHHHhhc----CC-
Q 021791          116 CPTVATYTSVVKCLCSCGRIED----AEELLGEMVRNGVSPSAETYNCFFKEYRGRKDANG-AMKLYRQMKED----DL-  185 (307)
Q Consensus       116 ~~~~~~~~~ll~~~~~~~~~~~----a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~-a~~~~~~~~~~----~~-  185 (307)
                      .||..|||+++.+..+.|+++.    |.+++.+|++.|+.|...+|..+|..+++.+++.+ +..++..+...    .. 
T Consensus       270 ~Pnl~TfNalL~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~ltGK~fk  349 (625)
T KOG4422|consen  270 TPNLFTFNALLSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNSLTGKTFK  349 (625)
T ss_pred             CCchHhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHhhccCccc
Confidence            9999999999999999998876    56788899999999999999999999999888854 44455544332    11 


Q ss_pred             --CCccHHHHHHHHHHHHhcCcHHHHHHHHHHHhhC----CCCCCH---HhHHHHHHHHHccCcHHHHHHHHHHHHHcCC
Q 021791          186 --CVPNIHTYNILIGMFMALNRMDMVREIWNHVKGS----ELGLDL---DSYTMLIHGLCEKQKWKEACQYFVEMIEKGL  256 (307)
Q Consensus       186 --~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~~~---~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~  256 (307)
                        -+.|...|...+..|.+..+.+.|.++..-....    -+.|+.   .-|..+....+.....+.....|+.|.-.-+
T Consensus       350 p~~p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~~~Y~~lVP~~y  429 (625)
T KOG4422|consen  350 PITPTDNKFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTLKWYEDLVPSAY  429 (625)
T ss_pred             CCCCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccee
Confidence              1335667788888899999999999887766542    122332   2366777778888889999999999998878


Q ss_pred             CCcHhhHHHHHHHHhhchhHHHHHHHHHHhhhcCCCCCcccCCC
Q 021791          257 LPQKVTFETLYRGLIQSDMLRTWRRLKKKLDEESITFGSEFQNY  300 (307)
Q Consensus       257 ~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~  300 (307)
                      .|+..+...++++..-.|.++-..+++..+...|-+....+..+
T Consensus       430 ~p~~~~m~~~lrA~~v~~~~e~ipRiw~D~~~~ght~r~~l~ee  473 (625)
T KOG4422|consen  430 FPHSQTMIHLLRALDVANRLEVIPRIWKDSKEYGHTFRSDLREE  473 (625)
T ss_pred             cCCchhHHHHHHHHhhcCcchhHHHHHHHHHHhhhhhhHHHHHH
Confidence            89999999999999999999999999999998887666555443

>PRK10747 putative protoheme IX biogenesis protein; Provisional

Probab=99.71  E-value=1.1e-13  Score=113.93  Aligned_cols=251  Identities=11%  Similarity=0.013  Sum_probs=163.6

Q ss_pred             HhcCchhhHHHHHHHHHhcCCCCcHHHHH--HHHHHHHhhCCCCcchhhHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHH
Q 021791           15 CKINRIDMAERFLGEMIERGVEPNVVTYN--VLLNGVCRRASLHPNERFEKTIRNAEKVFDEMRVRGIEPDVTSFSIVLH   92 (307)
Q Consensus        15 ~~~g~~~~a~~~~~~~~~~~~~p~~~~~~--~ll~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~   92 (307)
                      .+.|+++.|.+.+.++.+.  .|+.....  .....+..          .|++++|.+.++.+.+.. +-+......+..
T Consensus       129 ~~~g~~~~A~~~l~~A~~~--~~~~~~~~~l~~a~l~l~----------~g~~~~Al~~l~~~~~~~-P~~~~al~ll~~  195 (398)
T PRK10747        129 QQRGDEARANQHLERAAEL--ADNDQLPVEITRVRIQLA----------RNENHAARHGVDKLLEVA-PRHPEVLRLAEQ  195 (398)
T ss_pred             HHCCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHH----------CCCHHHHHHHHHHHHhcC-CCCHHHHHHHHH
Confidence            5556666666666666543  33332222  11233344          555666666666665553 224555556666


Q ss_pred             HHHhcCCchhHHHHHHHHHHcCCCCch-------hhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHh
Q 021791           93 VYSRAHKPQLSLDKLNFMKEKGICPTV-------ATYTSVVKCLCSCGRIEDAEELLGEMVRNGVSPSAETYNCFFKEYR  165 (307)
Q Consensus        93 ~~~~~~~~~~a~~~~~~~~~~~~~~~~-------~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~  165 (307)
                      .|.+.|+++++.+++..+.+.+..++.       .+|..++.......+.+...++++.+... .+.++.....+...+.
T Consensus       196 ~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w~~lp~~-~~~~~~~~~~~A~~l~  274 (398)
T PRK10747        196 AYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWWKNQSRK-TRHQVALQVAMAEHLI  274 (398)
T ss_pred             HHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhCCHH-HhCCHHHHHHHHHHHH
Confidence            666666666666666666655433221       12222233333333444445555544332 2235666777788888


Q ss_pred             cCCChhHHHHHHHHHhhcCCCCccHHHHHHHHHHHHhcCcHHHHHHHHHHHhhCCCCCCHHhHHHHHHHHHccCcHHHHH
Q 021791          166 GRKDANGAMKLYRQMKEDDLCVPNIHTYNILIGMFMALNRMDMVREIWNHVKGSELGLDLDSYTMLIHGLCEKQKWKEAC  245 (307)
Q Consensus       166 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~  245 (307)
                      ..|+.++|..++++..+.   +|+....  ++.+....++.+++.+..+...+... -|...+..+...+.+.|++++|.
T Consensus       275 ~~g~~~~A~~~L~~~l~~---~~~~~l~--~l~~~l~~~~~~~al~~~e~~lk~~P-~~~~l~l~lgrl~~~~~~~~~A~  348 (398)
T PRK10747        275 ECDDHDTAQQIILDGLKR---QYDERLV--LLIPRLKTNNPEQLEKVLRQQIKQHG-DTPLLWSTLGQLLMKHGEWQEAS  348 (398)
T ss_pred             HCCCHHHHHHHHHHHHhc---CCCHHHH--HHHhhccCCChHHHHHHHHHHHhhCC-CCHHHHHHHHHHHHHCCCHHHHH
Confidence            999999999999888874   5555322  23333456889999999988887743 26667888899999999999999


Q ss_pred             HHHHHHHHcCCCCcHhhHHHHHHHHhhchhHHHHHHHHHHhh
Q 021791          246 QYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLD  287 (307)
Q Consensus       246 ~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~  287 (307)
                      +.|+.+.+.  .|+..++..+...+.+.|+.++|.+++++-.
T Consensus       349 ~~le~al~~--~P~~~~~~~La~~~~~~g~~~~A~~~~~~~l  388 (398)
T PRK10747        349 LAFRAALKQ--RPDAYDYAWLADALDRLHKPEEAAAMRRDGL  388 (398)
T ss_pred             HHHHHHHhc--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            999999965  6999999999999999999999999998763

>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=99.70  E-value=8.4e-15  Score=119.33  Aligned_cols=273  Identities=12%  Similarity=0.086  Sum_probs=203.1

Q ss_pred             HHHHHHHHHHhcCchhhHHHHHHHHHhcCCCCc-HHHHHHHHHHHHhhCCCCcchhh-----------------------
Q 021791            6 MYTSLIYGWCKINRIDMAERFLGEMIERGVEPN-VVTYNVLLNGVCRRASLHPNERF-----------------------   61 (307)
Q Consensus         6 ~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~-~~~~~~ll~~~~~~~~~~~~~~~-----------------------   61 (307)
                      +|+.|...+-..|+...|++-|++..+.  .|+ ...|-.|-..|...+.++.+...                       
T Consensus       220 awsnLg~~f~~~Gei~~aiq~y~eAvkl--dP~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~lrpn~A~a~gNla~iYy  297 (966)
T KOG4626|consen  220 AWSNLGCVFNAQGEIWLAIQHYEEAVKL--DPNFLDAYINLGNVYKEARIFDRAVSCYLRALNLRPNHAVAHGNLACIYY  297 (966)
T ss_pred             eehhcchHHhhcchHHHHHHHHHHhhcC--CCcchHHHhhHHHHHHHHhcchHHHHHHHHHHhcCCcchhhccceEEEEe
Confidence            4556666666677777777777766653  332 22343443333333332222110                       


Q ss_pred             -HHHHHHHHHHHHHHHhcCCCC-CHHHHHHHHHHHHhcCCchhHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCChHHHH
Q 021791           62 -EKTIRNAEKVFDEMRVRGIEP-DVTSFSIVLHVYSRAHKPQLSLDKLNFMKEKGICPTVATYTSVVKCLCSCGRIEDAE  139 (307)
Q Consensus        62 -~~~~~~a~~~~~~~~~~~~~~-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~  139 (307)
                       .|.++-|+..|++..+.  .| -...|+.|..++-..|+..+|.+.|.+....... -..+.+.|.+.|...|.+++|.
T Consensus       298 eqG~ldlAI~~Ykral~~--~P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~p~-hadam~NLgni~~E~~~~e~A~  374 (966)
T KOG4626|consen  298 EQGLLDLAIDTYKRALEL--QPNFPDAYNNLANALKDKGSVTEAVDCYNKALRLCPN-HADAMNNLGNIYREQGKIEEAT  374 (966)
T ss_pred             ccccHHHHHHHHHHHHhc--CCCchHHHhHHHHHHHhccchHHHHHHHHHHHHhCCc-cHHHHHHHHHHHHHhccchHHH
Confidence             78889999999999876  34 4678999999999999999999999999887533 5678899999999999999999


Q ss_pred             HHHHHHHhCCCCCCHhhHHHHHHHHhcCCChhHHHHHHHHHhhcCCCCccHHHHHHHHHHHHhcCcHHHHHHHHHHHhhC
Q 021791          140 ELLGEMVRNGVSPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDDLCVPNIHTYNILIGMFMALNRMDMVREIWNHVKGS  219 (307)
Q Consensus       140 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~  219 (307)
                      .+|......... -...++.|...|-+.|++++|+..+++..+..  +.-...|+.+...|...|+.+.|.+.+.+....
T Consensus       375 ~ly~~al~v~p~-~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI~--P~fAda~~NmGnt~ke~g~v~~A~q~y~rAI~~  451 (966)
T KOG4626|consen  375 RLYLKALEVFPE-FAAAHNNLASIYKQQGNLDDAIMCYKEALRIK--PTFADALSNMGNTYKEMGDVSAAIQCYTRAIQI  451 (966)
T ss_pred             HHHHHHHhhChh-hhhhhhhHHHHHHhcccHHHHHHHHHHHHhcC--chHHHHHHhcchHHHHhhhHHHHHHHHHHHHhc
Confidence            999998875332 45688999999999999999999999999874  445778999999999999999999999998876


Q ss_pred             CCCCC-HHhHHHHHHHHHccCcHHHHHHHHHHHHHcCCCCcH-hhHHHHHHHHh----hchhHHHHHHHHHHhhhcC
Q 021791          220 ELGLD-LDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQK-VTFETLYRGLI----QSDMLRTWRRLKKKLDEES  290 (307)
Q Consensus       220 ~~~~~-~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~-~~~~~l~~~~~----~~g~~~~a~~~~~~~~~~~  290 (307)
                      +  |. ...++.|...|-..|+..+|+.-+++.++  ++||. ..|..++.++-    -.+.-+...++++-.++..
T Consensus       452 n--Pt~AeAhsNLasi~kDsGni~~AI~sY~~aLk--lkPDfpdA~cNllh~lq~vcdw~D~d~~~~kl~sivrdql  524 (966)
T KOG4626|consen  452 N--PTFAEAHSNLASIYKDSGNIPEAIQSYRTALK--LKPDFPDAYCNLLHCLQIVCDWTDYDKRMKKLVSIVRDQL  524 (966)
T ss_pred             C--cHHHHHHhhHHHHhhccCCcHHHHHHHHHHHc--cCCCCchhhhHHHHHHHHHhcccchHHHHHHHHHHHHHHH
Confidence            3  44 56789999999999999999999999985  46664 34555554432    2222333444555444433

>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]

Probab=99.69  E-value=2.9e-14  Score=116.91  Aligned_cols=266  Identities=11%  Similarity=-0.015  Sum_probs=202.2

Q ss_pred             HHHHHHHHHHhcCchhhHHHHHHHHHhcC--CCCcHHHHHHHHHHHHhhCCCCcchhhHHHHHHHHHHH-HHHHhcCCCC
Q 021791            6 MYTSLIYGWCKINRIDMAERFLGEMIERG--VEPNVVTYNVLLNGVCRRASLHPNERFEKTIRNAEKVF-DEMRVRGIEP   82 (307)
Q Consensus         6 ~~~~li~~~~~~g~~~~a~~~~~~~~~~~--~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~a~~~~-~~~~~~~~~~   82 (307)
                      +...+..+|...+++++|+++|+.+.+..  ..-+...|.+.+--+-+              +-++..+ +++.+. -+-
T Consensus       355 vl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~--------------~v~Ls~Laq~Li~~-~~~  419 (638)
T KOG1126|consen  355 VLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQD--------------EVALSYLAQDLIDT-DPN  419 (638)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHh--------------hHHHHHHHHHHHhh-CCC
Confidence            33445666777777777777777776541  11245566666543332              1122222 222222 244


Q ss_pred             CHHHHHHHHHHHHhcCCchhHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHhhHHHHHH
Q 021791           83 DVTSFSIVLHVYSRAHKPQLSLDKLNFMKEKGICPTVATYTSVVKCLCSCGRIEDAEELLGEMVRNGVSPSAETYNCFFK  162 (307)
Q Consensus        83 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~  162 (307)
                      .+.+|.++..+|+-+++.+.|++.|++..+.+.. ...+|+.+..-+.....+|.|...|+.......+ +-..|..+..
T Consensus       420 sPesWca~GNcfSLQkdh~~Aik~f~RAiQldp~-faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~~r-hYnAwYGlG~  497 (638)
T KOG1126|consen  420 SPESWCALGNCFSLQKDHDTAIKCFKRAIQLDPR-FAYAYTLLGHESIATEEFDKAMKSFRKALGVDPR-HYNAWYGLGT  497 (638)
T ss_pred             CcHHHHHhcchhhhhhHHHHHHHHHHHhhccCCc-cchhhhhcCChhhhhHHHHhHHHHHHhhhcCCch-hhHHHHhhhh
Confidence            6789999999999999999999999999987533 7889999999999999999999999998765332 3445566778


Q ss_pred             HHhcCCChhHHHHHHHHHhhcCCCCccHHHHHHHHHHHHhcCcHHHHHHHHHHHhhCCCCCCHHhHHHHHHHHHccCcHH
Q 021791          163 EYRGRKDANGAMKLYRQMKEDDLCVPNIHTYNILIGMFMALNRMDMVREIWNHVKGSELGLDLDSYTMLIHGLCEKQKWK  242 (307)
Q Consensus       163 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~  242 (307)
                      .|.+.++++.|+-.|+...+.+  +.+.+....+...+.+.|+.|+|+.+++++...+.. |+..--..+..+...++++
T Consensus       498 vy~Kqek~e~Ae~~fqkA~~IN--P~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~k-n~l~~~~~~~il~~~~~~~  574 (638)
T KOG1126|consen  498 VYLKQEKLEFAEFHFQKAVEIN--PSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPK-NPLCKYHRASILFSLGRYV  574 (638)
T ss_pred             heeccchhhHHHHHHHhhhcCC--ccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCC-CchhHHHHHHHHHhhcchH
Confidence            8999999999999999999987  788899999999999999999999999999987644 6666556667777889999


Q ss_pred             HHHHHHHHHHHcCCCCcHhhHHHHHHHHhhchhHHHHHHHHHHhhhcCCC
Q 021791          243 EACQYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDEESIT  292 (307)
Q Consensus       243 ~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~  292 (307)
                      +|+..++++.+. ++-+...|..+...|.+.|+.+.|..-|--+.+.+.+
T Consensus       575 eal~~LEeLk~~-vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~ldpk  623 (638)
T KOG1126|consen  575 EALQELEELKEL-VPQESSVFALLGKIYKRLGNTDLALLHFSWALDLDPK  623 (638)
T ss_pred             HHHHHHHHHHHh-CcchHHHHHHHHHHHHHHccchHHHHhhHHHhcCCCc
Confidence            999999999875 3334556888889999999999999887776554433

>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional

Probab=99.69  E-value=4.7e-13  Score=119.95  Aligned_cols=264  Identities=13%  Similarity=0.017  Sum_probs=203.1

Q ss_pred             cHHHHHHHHHHHHhcCchhhHHHHHHHHHhcCCCCcHHHHHHHHHHHHhhCCCCcchhhHHHHHHHHHHHHHHHhcCCCC
Q 021791            3 NVKMYTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPNERFEKTIRNAEKVFDEMRVRGIEP   82 (307)
Q Consensus         3 ~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~   82 (307)
                      +...|..+..++.. +++++|...|.+....  .|+......+...+..          .|++++|...|+++...  +|
T Consensus       476 ~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~--~Pd~~~~L~lA~al~~----------~Gr~eeAi~~~rka~~~--~p  540 (987)
T PRK09782        476 DAAAWNRLAKCYRD-TLPGVALYAWLQAEQR--QPDAWQHRAVAYQAYQ----------VEDYATALAAWQKISLH--DM  540 (987)
T ss_pred             CHHHHHHHHHHHHh-CCcHHHHHHHHHHHHh--CCchHHHHHHHHHHHH----------CCCHHHHHHHHHHHhcc--CC
Confidence            45677777777776 8888999988888776  4665443333334445          78899999999987654  45


Q ss_pred             CHHHHHHHHHHHHhcCCchhHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHhhHHHHHH
Q 021791           83 DVTSFSIVLHVYSRAHKPQLSLDKLNFMKEKGICPTVATYTSVVKCLCSCGRIEDAEELLGEMVRNGVSPSAETYNCFFK  162 (307)
Q Consensus        83 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~  162 (307)
                      +...+..+...+.+.|++++|.+.++...+.+.. +...+..+.......|++++|...+++..+..  |+...+..+..
T Consensus       541 ~~~a~~~la~all~~Gd~~eA~~~l~qAL~l~P~-~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l~--P~~~a~~~LA~  617 (987)
T PRK09782        541 SNEDLLAAANTAQAAGNGAARDRWLQQAEQRGLG-DNALYWWLHAQRYIPGQPELALNDLTRSLNIA--PSANAYVARAT  617 (987)
T ss_pred             CcHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCc-cHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhC--CCHHHHHHHHH
Confidence            5556677788889999999999999999887522 33333334444456699999999999998764  56788899999


Q ss_pred             HHhcCCChhHHHHHHHHHhhcCCCCccHHHHHHHHHHHHhcCcHHHHHHHHHHHhhCCCCCCHHhHHHHHHHHHccCcHH
Q 021791          163 EYRGRKDANGAMKLYRQMKEDDLCVPNIHTYNILIGMFMALNRMDMVREIWNHVKGSELGLDLDSYTMLIHGLCEKQKWK  242 (307)
Q Consensus       163 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~  242 (307)
                      ++.+.|++++|...+++.....  +.+...+..+..++...|+.++|+..++...+... -+...+..+..++...|+++
T Consensus       618 ~l~~lG~~deA~~~l~~AL~l~--Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~P-~~~~a~~nLA~al~~lGd~~  694 (987)
T PRK09782        618 IYRQRHNVPAAVSDLRAALELE--PNNSNYQAALGYALWDSGDIAQSREMLERAHKGLP-DDPALIRQLAYVNQRLDDMA  694 (987)
T ss_pred             HHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHCCCHH
Confidence            9999999999999999999886  67788888999999999999999999999988743 36778899999999999999


Q ss_pred             HHHHHHHHHHHcCCCCcH-hhHHHHHHHHhhchhHHHHHHHHHHhhhc
Q 021791          243 EACQYFVEMIEKGLLPQK-VTFETLYRGLIQSDMLRTWRRLKKKLDEE  289 (307)
Q Consensus       243 ~a~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~~  289 (307)
                      +|...+++.++.  .|+. .+............+++.+.+-+++....
T Consensus       695 eA~~~l~~Al~l--~P~~a~i~~~~g~~~~~~~~~~~a~~~~~r~~~~  740 (987)
T PRK09782        695 ATQHYARLVIDD--IDNQALITPLTPEQNQQRFNFRRLHEEVGRRWTF  740 (987)
T ss_pred             HHHHHHHHHHhc--CCCCchhhhhhhHHHHHHHHHHHHHHHHHHHhhc
Confidence            999999999865  4544 34444555566667777777766655443

>PRK11447 cellulose synthase subunit BcsC; Provisional

Probab=99.68  E-value=4.8e-13  Score=124.19  Aligned_cols=269  Identities=11%  Similarity=0.014  Sum_probs=175.3

Q ss_pred             cHHHHHHHHHHHHhcCchhhHHHHHHHHHhcCCCC-cHHHHHHH------------HHHHHhhCCCCcchhhHHHHHHHH
Q 021791            3 NVKMYTSLIYGWCKINRIDMAERFLGEMIERGVEP-NVVTYNVL------------LNGVCRRASLHPNERFEKTIRNAE   69 (307)
Q Consensus         3 ~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p-~~~~~~~l------------l~~~~~~~~~~~~~~~~~~~~~a~   69 (307)
                      |...+..+..++.+.|++++|++.|++..+..... ....|..+            ...+.+          .+++++|.
T Consensus       302 ~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~~~g~~~~~----------~g~~~eA~  371 (1157)
T PRK11447        302 DSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLIQQGDAALK----------ANNLAQAE  371 (1157)
T ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHHHHHHHHHH----------CCCHHHHH
Confidence            56778888999999999999999999988763221 22222222            223344          67788999


Q ss_pred             HHHHHHHhcCCCCCHHHHHHHHHHHHhcCCchhHHHHHHHHHHcCCCCchhhHHH-------------------------
Q 021791           70 KVFDEMRVRGIEPDVTSFSIVLHVYSRAHKPQLSLDKLNFMKEKGICPTVATYTS-------------------------  124 (307)
Q Consensus        70 ~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~-------------------------  124 (307)
                      ..|+++.+.. +.+...+..+...+...|++++|++.|++..+.... +...+..                         
T Consensus       372 ~~~~~Al~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~-~~~a~~~L~~l~~~~~~~~A~~~l~~l~~~~~  449 (1157)
T PRK11447        372 RLYQQARQVD-NTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPG-NTNAVRGLANLYRQQSPEKALAFIASLSASQR  449 (1157)
T ss_pred             HHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhcCHHHHHHHHHhCCHHHH
Confidence            9999988773 346667778888999999999999999988876422 2222222                         


Q ss_pred             -----------------HHHHHHhcCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHhcCCChhHHHHHHHHHhhcCCCC
Q 021791          125 -----------------VVKCLCSCGRIEDAEELLGEMVRNGVSPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDDLCV  187 (307)
Q Consensus       125 -----------------ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~  187 (307)
                                       +...+...|++++|.+.|++..+..+. +...+..+...|.+.|++++|...++++.+..  +
T Consensus       450 ~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P~-~~~~~~~LA~~~~~~G~~~~A~~~l~~al~~~--P  526 (1157)
T PRK11447        450 RSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALDPG-SVWLTYRLAQDLRQAGQRSQADALMRRLAQQK--P  526 (1157)
T ss_pred             HHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--C
Confidence                             223345678888888888888876543 56677778888889999999999988876643  2


Q ss_pred             ccHHH--------------------------------------------------------------------------H
Q 021791          188 PNIHT--------------------------------------------------------------------------Y  193 (307)
Q Consensus       188 ~~~~~--------------------------------------------------------------------------~  193 (307)
                      .+...                                                                          +
T Consensus       527 ~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~~l~~~p~~~~~~  606 (1157)
T PRK11447        527 NDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEAEALLRQQPPSTRID  606 (1157)
T ss_pred             CCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHHHHHHhCCCCchHH
Confidence            22221                                                                          2


Q ss_pred             HHHHHHHHhcCcHHHHHHHHHHHhhCCCCCCHHhHHHHHHHHHccCcHHHHHHHHHHHHHcCCCC-cHhhHHHHHHHHhh
Q 021791          194 NILIGMFMALNRMDMVREIWNHVKGSELGLDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLP-QKVTFETLYRGLIQ  272 (307)
Q Consensus       194 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p-~~~~~~~l~~~~~~  272 (307)
                      ..+...+.+.|++++|+..++.+..... .+...+..+...+...|++++|.+.++.+.+.  .| +..+...+..++..
T Consensus       607 ~~La~~~~~~g~~~~A~~~y~~al~~~P-~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~~--~p~~~~~~~~la~~~~~  683 (1157)
T PRK11447        607 LTLADWAQQRGDYAAARAAYQRVLTREP-GNADARLGLIEVDIAQGDLAAARAQLAKLPAT--ANDSLNTQRRVALAWAA  683 (1157)
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHhcc--CCCChHHHHHHHHHHHh
Confidence            2233344455555566666555555432 24555666666666666666666666665543  22 23344555556666


Q ss_pred             chhHHHHHHHHHHhhhc
Q 021791          273 SDMLRTWRRLKKKLDEE  289 (307)
Q Consensus       273 ~g~~~~a~~~~~~~~~~  289 (307)
                      .|+.++|.++++++.+.
T Consensus       684 ~g~~~eA~~~~~~al~~  700 (1157)
T PRK11447        684 LGDTAAAQRTFNRLIPQ  700 (1157)
T ss_pred             CCCHHHHHHHHHHHhhh
Confidence            67777777776666554

>TIGR00540 hemY_coli hemY protein

Probab=99.68  E-value=3.4e-13  Score=111.57  Aligned_cols=262  Identities=10%  Similarity=-0.071  Sum_probs=173.3

Q ss_pred             HHHHHHhcCchhhHHHHHHHHHhcCCCCcHH--HHHHHHHHHHhhCCCCcchhhHHHHHHHHHHHHHHHhcCCCCCHHHH
Q 021791           10 LIYGWCKINRIDMAERFLGEMIERGVEPNVV--TYNVLLNGVCRRASLHPNERFEKTIRNAEKVFDEMRVRGIEPDVTSF   87 (307)
Q Consensus        10 li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~--~~~~ll~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~   87 (307)
                      ...+..+.|+++.|.+.+.+..+..  |+..  .-......+..          .+++++|...++.+.+.. +-+....
T Consensus       124 aA~aa~~~g~~~~A~~~l~~a~~~~--p~~~l~~~~~~a~l~l~----------~~~~~~Al~~l~~l~~~~-P~~~~~l  190 (409)
T TIGR00540       124 AAEAAQQRGDEARANQHLEEAAELA--GNDNILVEIARTRILLA----------QNELHAARHGVDKLLEMA-PRHKEVL  190 (409)
T ss_pred             HHHHHHHCCCHHHHHHHHHHHHHhC--CcCchHHHHHHHHHHHH----------CCCHHHHHHHHHHHHHhC-CCCHHHH
Confidence            3455666677777777777776542  3332  22223444555          667788888888887774 3366677


Q ss_pred             HHHHHHHHhcCCchhHHHHHHHHHHcCCCCchhhHHHHHHHH---HhcCChHHHHHHHHHHHhCCC---CCCHhhHHHHH
Q 021791           88 SIVLHVYSRAHKPQLSLDKLNFMKEKGICPTVATYTSVVKCL---CSCGRIEDAEELLGEMVRNGV---SPSAETYNCFF  161 (307)
Q Consensus        88 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~---~~~~~~~~a~~~~~~~~~~~~---~~~~~~~~~l~  161 (307)
                      ..+...+...|+++.+.+.+..+.+.+..+.......-...+   ...+..+++.+.+..+.....   +.+...+..+.
T Consensus       191 ~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~~~~~~p~~~~~~~~l~~~~a  270 (409)
T TIGR00540       191 KLAEEAYIRSGAWQALDDIIDNMAKAGLFDDEEFADLEQKAEIGLLDEAMADEGIDGLLNWWKNQPRHRRHNIALKIALA  270 (409)
T ss_pred             HHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHCCHHHhCCHHHHHHHH
Confidence            778888888888888888888888776542222211111111   222222323334444443322   13677888888


Q ss_pred             HHHhcCCChhHHHHHHHHHhhcCCCCccHHH---HHHHHHHHHhcCcHHHHHHHHHHHhhCCCCCCH--HhHHHHHHHHH
Q 021791          162 KEYRGRKDANGAMKLYRQMKEDDLCVPNIHT---YNILIGMFMALNRMDMVREIWNHVKGSELGLDL--DSYTMLIHGLC  236 (307)
Q Consensus       162 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~---~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~li~~~~  236 (307)
                      ..+...|+.++|.+++++..+..   ||...   ...........++.+.+.+.++...+... -|.  .....+...+.
T Consensus       271 ~~l~~~g~~~~A~~~l~~~l~~~---pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~~p-~~~~~~ll~sLg~l~~  346 (409)
T TIGR00540       271 EHLIDCDDHDSAQEIIFDGLKKL---GDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKNVD-DKPKCCINRALGQLLM  346 (409)
T ss_pred             HHHHHCCChHHHHHHHHHHHhhC---CCcccchhHHHHHhhhcCCCChHHHHHHHHHHHHhCC-CChhHHHHHHHHHHHH
Confidence            89999999999999999998874   33321   11111222345778888888888776522 244  55678889999


Q ss_pred             ccCcHHHHHHHHHHHHHcCCCCcHhhHHHHHHHHhhchhHHHHHHHHHHhhh
Q 021791          237 EKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDE  288 (307)
Q Consensus       237 ~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~  288 (307)
                      +.|++++|.+.|+........|+...+..+...+.+.|+.++|.+++++-..
T Consensus       347 ~~~~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~~~g~~~~A~~~~~~~l~  398 (409)
T TIGR00540       347 KHGEFIEAADAFKNVAACKEQLDANDLAMAADAFDQAGDKAEAAAMRQDSLG  398 (409)
T ss_pred             HcccHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            9999999999999644444578999899999999999999999999998643

This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.

>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B

Probab=99.66  E-value=1.3e-15  Score=119.82  Aligned_cols=233  Identities=12%  Similarity=0.071  Sum_probs=115.9

Q ss_pred             cHHHHHHHHHHHHhcCchhhHHHHHHHHHhcCCCCcHHHHHHHHHHHHhhCCCCcchhhHHHHHHHHHHHHHHHhcCCCC
Q 021791            3 NVKMYTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPNERFEKTIRNAEKVFDEMRVRGIEP   82 (307)
Q Consensus         3 ~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~   82 (307)
                      |+..|..+....-..++++.|.+.++++...+.. +...+..++.. ..          .+++++|.++++...+.  .+
T Consensus        43 ~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~-~~~~~~~l~~l-~~----------~~~~~~A~~~~~~~~~~--~~  108 (280)
T PF13429_consen   43 DPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKA-NPQDYERLIQL-LQ----------DGDPEEALKLAEKAYER--DG  108 (280)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             cccccccccccccccccccccccccccccccccc-ccccccccccc-cc----------ccccccccccccccccc--cc
Confidence            4445555666777789999999999999877433 55567777665 56          78899999998877655  35


Q ss_pred             CHHHHHHHHHHHHhcCCchhHHHHHHHHHHcC-CCCchhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHhhHHHHH
Q 021791           83 DVTSFSIVLHVYSRAHKPQLSLDKLNFMKEKG-ICPTVATYTSVVKCLCSCGRIEDAEELLGEMVRNGVSPSAETYNCFF  161 (307)
Q Consensus        83 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~  161 (307)
                      +...+..++..+.+.++++++.++++.+.... .+.+...|..+...+.+.|+.++|++.+++..+..+. |......++
T Consensus       109 ~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~P~-~~~~~~~l~  187 (280)
T PF13429_consen  109 DPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDYRKALELDPD-DPDARNALA  187 (280)
T ss_dssp             ---------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHHHHHHH-TT--HHHHHHHH
T ss_pred             ccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-CHHHHHHHH
Confidence            77778889999999999999999999987543 3457788889999999999999999999999987543 678889999


Q ss_pred             HHHhcCCChhHHHHHHHHHhhcCCCCccHHHHHHHHHHHHhcCcHHHHHHHHHHHhhCCCCCCHHhHHHHHHHHHccCcH
Q 021791          162 KEYRGRKDANGAMKLYRQMKEDDLCVPNIHTYNILIGMFMALNRMDMVREIWNHVKGSELGLDLDSYTMLIHGLCEKQKW  241 (307)
Q Consensus       162 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~  241 (307)
                      ..+...|+.+++..++....+..  +.|...+..+..++...|+.++|...++...... +.|+.....+..++...|+.
T Consensus       188 ~~li~~~~~~~~~~~l~~~~~~~--~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~-p~d~~~~~~~a~~l~~~g~~  264 (280)
T PF13429_consen  188 WLLIDMGDYDEAREALKRLLKAA--PDDPDLWDALAAAYLQLGRYEEALEYLEKALKLN-PDDPLWLLAYADALEQAGRK  264 (280)
T ss_dssp             HHHCTTCHHHHHHHHHHHHHHH---HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHS-TT-HHHHHHHHHHHT-----
T ss_pred             HHHHHCCChHHHHHHHHHHHHHC--cCHHHHHHHHHHHhcccccccccccccccccccc-cccccccccccccccccccc
Confidence            99999999999999999888775  4566788899999999999999999999998864 33888889999999999999


Q ss_pred             HHHHHHHHHHHH
Q 021791          242 KEACQYFVEMIE  253 (307)
Q Consensus       242 ~~a~~~~~~~~~  253 (307)
                      ++|..+..+...
T Consensus       265 ~~A~~~~~~~~~  276 (280)
T PF13429_consen  265 DEALRLRRQALR  276 (280)
T ss_dssp             ------------
T ss_pred             cccccccccccc
Confidence            999999887754

>PRK11447 cellulose synthase subunit BcsC; Provisional

Probab=99.66  E-value=4.9e-13  Score=124.16  Aligned_cols=260  Identities=13%  Similarity=0.078  Sum_probs=205.8

Q ss_pred             HHHHHHHHHhcCchhhHHHHHHHHHhcCCCC-cHHHHHHHHHHHHhhCCCCcchhhHHHHHHHHHHHHHHHhcCCCCCHH
Q 021791            7 YTSLIYGWCKINRIDMAERFLGEMIERGVEP-NVVTYNVLLNGVCRRASLHPNERFEKTIRNAEKVFDEMRVRGIEPDVT   85 (307)
Q Consensus         7 ~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p-~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~   85 (307)
                      +..+...+...|++++|++.|++..+.  .| +...+..+...+.+          .|++++|...++++.+.. +.+..
T Consensus       464 ~~~~a~~~~~~g~~~eA~~~~~~Al~~--~P~~~~~~~~LA~~~~~----------~G~~~~A~~~l~~al~~~-P~~~~  530 (1157)
T PRK11447        464 LAQQAEALENQGKWAQAAELQRQRLAL--DPGSVWLTYRLAQDLRQ----------AGQRSQADALMRRLAQQK-PNDPE  530 (1157)
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHH----------cCCHHHHHHHHHHHHHcC-CCCHH
Confidence            445667788899999999999999886  34 45677778888888          888999999999998753 33555


Q ss_pred             HHHHHHHHHHhcCCchhHHHHHHHHHHcCCCCch---------hhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHhh
Q 021791           86 SFSIVLHVYSRAHKPQLSLDKLNFMKEKGICPTV---------ATYTSVVKCLCSCGRIEDAEELLGEMVRNGVSPSAET  156 (307)
Q Consensus        86 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~---------~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~  156 (307)
                      .+..+...+...++.++|...++.+......++.         ..+..+...+...|+.++|..+++.     .+.+...
T Consensus       531 ~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~~l~~-----~p~~~~~  605 (1157)
T PRK11447        531 QVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEAEALLRQ-----QPPSTRI  605 (1157)
T ss_pred             HHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHHHHHHh-----CCCCchH
Confidence            5555666778899999999999887543322221         1233456778899999999999872     2346667


Q ss_pred             HHHHHHHHhcCCChhHHHHHHHHHhhcCCCCccHHHHHHHHHHHHhcCcHHHHHHHHHHHhhCCCCCCHHhHHHHHHHHH
Q 021791          157 YNCFFKEYRGRKDANGAMKLYRQMKEDDLCVPNIHTYNILIGMFMALNRMDMVREIWNHVKGSELGLDLDSYTMLIHGLC  236 (307)
Q Consensus       157 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~  236 (307)
                      +..+...+.+.|++++|...|++.....  +.+...+..+...+...|++++|++.++....... .+...+..+..++.
T Consensus       606 ~~~La~~~~~~g~~~~A~~~y~~al~~~--P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~~~p-~~~~~~~~la~~~~  682 (1157)
T PRK11447        606 DLTLADWAQQRGDYAAARAAYQRVLTRE--PGNADARLGLIEVDIAQGDLAAARAQLAKLPATAN-DSLNTQRRVALAWA  682 (1157)
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhccCC-CChHHHHHHHHHHH
Confidence            7888999999999999999999999886  67888999999999999999999999998877532 25566777888899


Q ss_pred             ccCcHHHHHHHHHHHHHcCC--CC---cHhhHHHHHHHHhhchhHHHHHHHHHHhh
Q 021791          237 EKQKWKEACQYFVEMIEKGL--LP---QKVTFETLYRGLIQSDMLRTWRRLKKKLD  287 (307)
Q Consensus       237 ~~g~~~~a~~~~~~~~~~~~--~p---~~~~~~~l~~~~~~~g~~~~a~~~~~~~~  287 (307)
                      ..|++++|..++++++...-  .|   +...+..+...+...|+.++|.+.+++..
T Consensus       683 ~~g~~~eA~~~~~~al~~~~~~~~~~~~a~~~~~~a~~~~~~G~~~~A~~~y~~Al  738 (1157)
T PRK11447        683 ALGDTAAAQRTFNRLIPQAKSQPPSMESALVLRDAARFEAQTGQPQQALETYKDAM  738 (1157)
T ss_pred             hCCCHHHHHHHHHHHhhhCccCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            99999999999999987532  22   22456667788899999999999999874

>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW

Probab=99.62  E-value=1.8e-12  Score=99.32  Aligned_cols=204  Identities=12%  Similarity=0.044  Sum_probs=170.2

Q ss_pred             CCHHHHHHHHHHHHhcCCchhHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHhhHHHHH
Q 021791           82 PDVTSFSIVLHVYSRAHKPQLSLDKLNFMKEKGICPTVATYTSVVKCLCSCGRIEDAEELLGEMVRNGVSPSAETYNCFF  161 (307)
Q Consensus        82 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~  161 (307)
                      .....+..+...+...|++++|.+.+++..+... .+...+..+...+...|++++|...+++....... +...+..+.
T Consensus        29 ~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p-~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~~~  106 (234)
T TIGR02521        29 KAAKIRVQLALGYLEQGDLEVAKENLDKALEHDP-DDYLAYLALALYYQQLGELEKAEDSFRRALTLNPN-NGDVLNNYG  106 (234)
T ss_pred             cHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCc-ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-CHHHHHHHH
Confidence            3456778888999999999999999999987643 35778888999999999999999999999887543 567788888


Q ss_pred             HHHhcCCChhHHHHHHHHHhhcCCCCccHHHHHHHHHHHHhcCcHHHHHHHHHHHhhCCCCCCHHhHHHHHHHHHccCcH
Q 021791          162 KEYRGRKDANGAMKLYRQMKEDDLCVPNIHTYNILIGMFMALNRMDMVREIWNHVKGSELGLDLDSYTMLIHGLCEKQKW  241 (307)
Q Consensus       162 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~  241 (307)
                      ..+...|++++|...+.+.......+.....+..+...+...|++++|...+........ .+...+..+...+...|++
T Consensus       107 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~la~~~~~~~~~  185 (234)
T TIGR02521       107 TFLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDP-QRPESLLELAELYYLRGQY  185 (234)
T ss_pred             HHHHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc-CChHHHHHHHHHHHHcCCH
Confidence            999999999999999999987543233456777888899999999999999999887643 2567888899999999999


Q ss_pred             HHHHHHHHHHHHcCCCCcHhhHHHHHHHHhhchhHHHHHHHHHHhhhc
Q 021791          242 KEACQYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDEE  289 (307)
Q Consensus       242 ~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~  289 (307)
                      ++|...+++..+. .+.+...+..+...+...|+.++|..+.+.+...
T Consensus       186 ~~A~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~  232 (234)
T TIGR02521       186 KDARAYLERYQQT-YNQTAESLWLGIRIARALGDVAAAQRYGAQLQKL  232 (234)
T ss_pred             HHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhh
Confidence            9999999999876 3445667777888889999999999998887543

Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.

>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional

Probab=99.61  E-value=4.6e-12  Score=113.73  Aligned_cols=232  Identities=9%  Similarity=-0.001  Sum_probs=184.1

Q ss_pred             cHHHHHHHHHHHHhhCCCCcchhhHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCchhHHHHHHHHHHcCCCC
Q 021791           38 NVVTYNVLLNGVCRRASLHPNERFEKTIRNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHKPQLSLDKLNFMKEKGICP  117 (307)
Q Consensus        38 ~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~  117 (307)
                      +...|..+..++..           ++.++|...+.+....  .|+......+...+...|++++|...++.+...  +|
T Consensus       476 ~~~a~~~LG~~l~~-----------~~~~eAi~a~~~Al~~--~Pd~~~~L~lA~al~~~Gr~eeAi~~~rka~~~--~p  540 (987)
T PRK09782        476 DAAAWNRLAKCYRD-----------TLPGVALYAWLQAEQR--QPDAWQHRAVAYQAYQVEDYATALAAWQKISLH--DM  540 (987)
T ss_pred             CHHHHHHHHHHHHh-----------CCcHHHHHHHHHHHHh--CCchHHHHHHHHHHHHCCCHHHHHHHHHHHhcc--CC
Confidence            45566666655543           4567799888887766  466555445555667899999999999998665  34


Q ss_pred             chhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHhcCCChhHHHHHHHHHhhcCCCCccHHHHHHHH
Q 021791          118 TVATYTSVVKCLCSCGRIEDAEELLGEMVRNGVSPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDDLCVPNIHTYNILI  197 (307)
Q Consensus       118 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~  197 (307)
                      +...+..+...+.+.|++++|...+++..+.+.. +...+..+.......|++++|...+++....   .|+...+..+.
T Consensus       541 ~~~a~~~la~all~~Gd~~eA~~~l~qAL~l~P~-~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l---~P~~~a~~~LA  616 (987)
T PRK09782        541 SNEDLLAAANTAQAAGNGAARDRWLQQAEQRGLG-DNALYWWLHAQRYIPGQPELALNDLTRSLNI---APSANAYVARA  616 (987)
T ss_pred             CcHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCc-cHHHHHHHHHHHHhCCCHHHHHHHHHHHHHh---CCCHHHHHHHH
Confidence            5556677788899999999999999999886522 3334444444555679999999999999987   45788999999


Q ss_pred             HHHHhcCcHHHHHHHHHHHhhCCCCCCHHhHHHHHHHHHccCcHHHHHHHHHHHHHcCCCCcHhhHHHHHHHHhhchhHH
Q 021791          198 GMFMALNRMDMVREIWNHVKGSELGLDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQSDMLR  277 (307)
Q Consensus       198 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~  277 (307)
                      .++.+.|+.++|+..+++....... +...++.+..++...|++++|+..+++.++.. +-+...+..+..++...|+++
T Consensus       617 ~~l~~lG~~deA~~~l~~AL~l~Pd-~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~-P~~~~a~~nLA~al~~lGd~~  694 (987)
T PRK09782        617 TIYRQRHNVPAAVSDLRAALELEPN-NSNYQAALGYALWDSGDIAQSREMLERAHKGL-PDDPALIRQLAYVNQRLDDMA  694 (987)
T ss_pred             HHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHH
Confidence            9999999999999999999987533 67788888889999999999999999999762 345667888999999999999


Q ss_pred             HHHHHHHHhhhcC
Q 021791          278 TWRRLKKKLDEES  290 (307)
Q Consensus       278 ~a~~~~~~~~~~~  290 (307)
                      +|...+++..+..
T Consensus       695 eA~~~l~~Al~l~  707 (987)
T PRK09782        695 ATQHYARLVIDDI  707 (987)
T ss_pred             HHHHHHHHHHhcC
Confidence            9999999986654

>PRK10747 putative protoheme IX biogenesis protein; Provisional

Probab=99.61  E-value=9.2e-12  Score=102.61  Aligned_cols=253  Identities=7%  Similarity=0.029  Sum_probs=190.9

Q ss_pred             cCchhhHHHHHHHHHhcCCCCcHHHHHHH-HHHHHhhCCCCcchhhHHHHHHHHHHHHHHHhcCCCCCHHHHH--HHHHH
Q 021791           17 INRIDMAERFLGEMIERGVEPNVVTYNVL-LNGVCRRASLHPNERFEKTIRNAEKVFDEMRVRGIEPDVTSFS--IVLHV   93 (307)
Q Consensus        17 ~g~~~~a~~~~~~~~~~~~~p~~~~~~~l-l~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~--~ll~~   93 (307)
                      .|++++|++......+..  +++..+..+ ..+..+          .|+++.|.+.+.++.+.  .|+.....  .....
T Consensus        97 eGd~~~A~k~l~~~~~~~--~~p~l~~llaA~aA~~----------~g~~~~A~~~l~~A~~~--~~~~~~~~~l~~a~l  162 (398)
T PRK10747         97 EGDYQQVEKLMTRNADHA--EQPVVNYLLAAEAAQQ----------RGDEARANQHLERAAEL--ADNDQLPVEITRVRI  162 (398)
T ss_pred             CCCHHHHHHHHHHHHhcc--cchHHHHHHHHHHHHH----------CCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHH
Confidence            589999998887765542  222222222 223244          78899999999999876  55554333  44678


Q ss_pred             HHhcCCchhHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCH-------hhHHHHHHHHhc
Q 021791           94 YSRAHKPQLSLDKLNFMKEKGICPTVATYTSVVKCLCSCGRIEDAEELLGEMVRNGVSPSA-------ETYNCFFKEYRG  166 (307)
Q Consensus        94 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~-------~~~~~l~~~~~~  166 (307)
                      +...|+++.|.+.++.+.+.... +......+...|.+.|++++|.+++..+.+.+..++.       .+|..++.....
T Consensus       163 ~l~~g~~~~Al~~l~~~~~~~P~-~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~  241 (398)
T PRK10747        163 QLARNENHAARHGVDKLLEVAPR-HPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMA  241 (398)
T ss_pred             HHHCCCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence            88999999999999999988644 7888999999999999999999999999987655322       233344444455


Q ss_pred             CCChhHHHHHHHHHhhcCCCCccHHHHHHHHHHHHhcCcHHHHHHHHHHHhhCCCCCCHHhHHHHHHHHHccCcHHHHHH
Q 021791          167 RKDANGAMKLYRQMKEDDLCVPNIHTYNILIGMFMALNRMDMVREIWNHVKGSELGLDLDSYTMLIHGLCEKQKWKEACQ  246 (307)
Q Consensus       167 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~  246 (307)
                      ..+.+...++++.+.+..  +.+......+...+...|+.++|.+++++..+.  .|+....  ++.+....++.+++.+
T Consensus       242 ~~~~~~l~~~w~~lp~~~--~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~--~~~~~l~--~l~~~l~~~~~~~al~  315 (398)
T PRK10747        242 DQGSEGLKRWWKNQSRKT--RHQVALQVAMAEHLIECDDHDTAQQIILDGLKR--QYDERLV--LLIPRLKTNNPEQLEK  315 (398)
T ss_pred             hcCHHHHHHHHHhCCHHH--hCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHHH--HHHhhccCCChHHHHH
Confidence            566777888888876553  567888999999999999999999999999885  4455322  3344456699999999


Q ss_pred             HHHHHHHcCCCCcHhhHHHHHHHHhhchhHHHHHHHHHHhhhcCC
Q 021791          247 YFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDEESI  291 (307)
Q Consensus       247 ~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~  291 (307)
                      ..+...+. .+-|+..+..+.+.|.+.|++++|++.|++..+...
T Consensus       316 ~~e~~lk~-~P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~~P  359 (398)
T PRK10747        316 VLRQQIKQ-HGDTPLLWSTLGQLLMKHGEWQEASLAFRAALKQRP  359 (398)
T ss_pred             HHHHHHhh-CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC
Confidence            99999876 233555678889999999999999999999977643

>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.60  E-value=4.6e-12  Score=100.07  Aligned_cols=193  Identities=12%  Similarity=0.026  Sum_probs=149.9

Q ss_pred             HHHHHHHHhcCCchhHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHhcC
Q 021791           88 SIVLHVYSRAHKPQLSLDKLNFMKEKGICPTVATYTSVVKCLCSCGRIEDAEELLGEMVRNGVSPSAETYNCFFKEYRGR  167 (307)
Q Consensus        88 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  167 (307)
                      ..+.+.|+-.++.++|...|+...+.+.. ....|+.+.+-|....+...|.+.++...+.++. |-..|-.+.++|.-.
T Consensus       334 CiIaNYYSlr~eHEKAv~YFkRALkLNp~-~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~p~-DyRAWYGLGQaYeim  411 (559)
T KOG1155|consen  334 CIIANYYSLRSEHEKAVMYFKRALKLNPK-YLSAWTLMGHEYVEMKNTHAAIESYRRAVDINPR-DYRAWYGLGQAYEIM  411 (559)
T ss_pred             eeehhHHHHHHhHHHHHHHHHHHHhcCcc-hhHHHHHhhHHHHHhcccHHHHHHHHHHHhcCch-hHHHHhhhhHHHHHh
Confidence            33344566677888999999999888654 6778889999999999999999999999887654 888999999999999


Q ss_pred             CChhHHHHHHHHHhhcCCCCccHHHHHHHHHHHHhcCcHHHHHHHHHHHhhCCCCCCHHhHHHHHHHHHccCcHHHHHHH
Q 021791          168 KDANGAMKLYRQMKEDDLCVPNIHTYNILIGMFMALNRMDMVREIWNHVKGSELGLDLDSYTMLIHGLCEKQKWKEACQY  247 (307)
Q Consensus       168 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~  247 (307)
                      +.+.-|+-.|++...-.  |.|+..|.+|.+.|.+.++.++|++.|......|-. +...+..+...|-+.++.++|...
T Consensus       412 ~Mh~YaLyYfqkA~~~k--PnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dt-e~~~l~~LakLye~l~d~~eAa~~  488 (559)
T KOG1155|consen  412 KMHFYALYYFQKALELK--PNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGDT-EGSALVRLAKLYEELKDLNEAAQY  488 (559)
T ss_pred             cchHHHHHHHHHHHhcC--CCchHHHHHHHHHHHHhccHHHHHHHHHHHHhcccc-chHHHHHHHHHHHHHHhHHHHHHH
Confidence            99999999999988875  678899999999999999999999999998887633 667889999999999999999999


Q ss_pred             HHHHHHc----CCCCc--HhhHHHHHHHHhhchhHHHHHHHHHH
Q 021791          248 FVEMIEK----GLLPQ--KVTFETLYRGLIQSDMLRTWRRLKKK  285 (307)
Q Consensus       248 ~~~~~~~----~~~p~--~~~~~~l~~~~~~~g~~~~a~~~~~~  285 (307)
                      |++.++.    |...+  .....-|..-+.+.+++++|......
T Consensus       489 yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~~~~As~Ya~~  532 (559)
T KOG1155|consen  489 YEKYVEVSELEGEIDDETIKARLFLAEYFKKMKDFDEASYYATL  532 (559)
T ss_pred             HHHHHHHHHhhcccchHHHHHHHHHHHHHHhhcchHHHHHHHHH
Confidence            8887663    33222  11222244445566666555554433

>PRK12370 invasion protein regulator; Provisional

Probab=99.60  E-value=1.7e-11  Score=105.37  Aligned_cols=275  Identities=11%  Similarity=0.085  Sum_probs=191.7

Q ss_pred             cHHHHHHHHHHHHh-----cCchhhHHHHHHHHHhcCCCCc-HHHHHHHHHHHHhhCCCCcchhhHHHHHHHHHHHHHHH
Q 021791            3 NVKMYTSLIYGWCK-----INRIDMAERFLGEMIERGVEPN-VVTYNVLLNGVCRRASLHPNERFEKTIRNAEKVFDEMR   76 (307)
Q Consensus         3 ~~~~~~~li~~~~~-----~g~~~~a~~~~~~~~~~~~~p~-~~~~~~ll~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~   76 (307)
                      +...|...+.+-..     .+.+++|.+.|++..+.  .|+ ...|..+..++...+...... ..+++++|...+++..
T Consensus       255 ~~da~~~~lrg~~~~~~~~~~~~~~A~~~~~~Al~l--dP~~a~a~~~La~~~~~~~~~g~~~-~~~~~~~A~~~~~~Al  331 (553)
T PRK12370        255 SIDSTMVYLRGKHELNQYTPYSLQQALKLLTQCVNM--SPNSIAPYCALAECYLSMAQMGIFD-KQNAMIKAKEHAIKAT  331 (553)
T ss_pred             ChHHHHHHHHhHHHHHccCHHHHHHHHHHHHHHHhc--CCccHHHHHHHHHHHHHHHHcCCcc-cchHHHHHHHHHHHHH
Confidence            34555566655322     23467999999999876  454 445555555444322110000 0466899999999999


Q ss_pred             hcCCCCCHHHHHHHHHHHHhcCCchhHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHhh
Q 021791           77 VRGIEPDVTSFSIVLHVYSRAHKPQLSLDKLNFMKEKGICPTVATYTSVVKCLCSCGRIEDAEELLGEMVRNGVSPSAET  156 (307)
Q Consensus        77 ~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~  156 (307)
                      +.. +-+...+..+...+...|++++|...+++..+.+.. +...+..+...+...|++++|...+++..+.++. +...
T Consensus       332 ~ld-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~-~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~-~~~~  408 (553)
T PRK12370        332 ELD-HNNPQALGLLGLINTIHSEYIVGSLLFKQANLLSPI-SADIKYYYGWNLFMAGQLEEALQTINECLKLDPT-RAAA  408 (553)
T ss_pred             hcC-CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-Chhh
Confidence            874 347778888888999999999999999999988643 6778888999999999999999999999987544 2333


Q ss_pred             HHHHHHHHhcCCChhHHHHHHHHHhhcCCCCccHHHHHHHHHHHHhcCcHHHHHHHHHHHhhCCCCCCHHhHHHHHHHHH
Q 021791          157 YNCFFKEYRGRKDANGAMKLYRQMKEDDLCVPNIHTYNILIGMFMALNRMDMVREIWNHVKGSELGLDLDSYTMLIHGLC  236 (307)
Q Consensus       157 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~  236 (307)
                      +..++..+...|++++|...+++...... +.+...+..+..++...|+.++|...+.++.... +.+....+.+...|.
T Consensus       409 ~~~~~~~~~~~g~~eeA~~~~~~~l~~~~-p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~-~~~~~~~~~l~~~~~  486 (553)
T PRK12370        409 GITKLWITYYHTGIDDAIRLGDELRSQHL-QDNPILLSMQVMFLSLKGKHELARKLTKEISTQE-ITGLIAVNLLYAEYC  486 (553)
T ss_pred             HHHHHHHHHhccCHHHHHHHHHHHHHhcc-ccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhcc-chhHHHHHHHHHHHh
Confidence            33445456678999999999999877642 2345567778888999999999999999876652 123444566666777


Q ss_pred             ccCcHHHHHHHHHHHHHc-CCCCcHhhHHHHHHHHhhchhHHHHHHHHHHhhhcC
Q 021791          237 EKQKWKEACQYFVEMIEK-GLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDEES  290 (307)
Q Consensus       237 ~~g~~~~a~~~~~~~~~~-~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~  290 (307)
                      ..|  ++|...++.+.+. .-.+...-+  +...+.-.|+.+.+..+ +++.+.+
T Consensus       487 ~~g--~~a~~~l~~ll~~~~~~~~~~~~--~~~~~~~~g~~~~~~~~-~~~~~~~  536 (553)
T PRK12370        487 QNS--ERALPTIREFLESEQRIDNNPGL--LPLVLVAHGEAIAEKMW-NKFKNED  536 (553)
T ss_pred             ccH--HHHHHHHHHHHHHhhHhhcCchH--HHHHHHHHhhhHHHHHH-HHhhccc
Confidence            777  5888888887664 222322233  33345556777766666 7776654

>PF13041 PPR_2: PPR repeat family

Probab=99.60  E-value=3.1e-15  Score=84.22  Aligned_cols=50  Identities=42%  Similarity=0.947  Sum_probs=48.7

Q ss_pred             ccHHHHHHHHHHHHhcCchhhHHHHHHHHHhcCCCCcHHHHHHHHHHHHh
Q 021791            2 PNVKMYTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCR   51 (307)
Q Consensus         2 p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~   51 (307)
                      ||+.+||++|++|++.|++++|.++|++|.+.|++||..||+.+|+++++
T Consensus         1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k   50 (50)
T PF13041_consen    1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK   50 (50)
T ss_pred             CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence            89999999999999999999999999999999999999999999999874

>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]

Probab=99.59  E-value=2.6e-11  Score=94.19  Aligned_cols=256  Identities=11%  Similarity=0.113  Sum_probs=189.3

Q ss_pred             cCchhhHHHHHHHHHhcCCCCcHHHHHHHHHHHHhhCCCCcchhhHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHh
Q 021791           17 INRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPNERFEKTIRNAEKVFDEMRVRGIEPDVTSFSIVLHVYSR   96 (307)
Q Consensus        17 ~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~   96 (307)
                      .|+|.+|+++..+-.+.+-.| ...|..-..+.-+          .|+.+.+-.++.+..+..-.++....-...+....
T Consensus        97 eG~~~qAEkl~~rnae~~e~p-~l~~l~aA~AA~q----------rgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~  165 (400)
T COG3071          97 EGDFQQAEKLLRRNAEHGEQP-VLAYLLAAEAAQQ----------RGDEDRANRYLAEAAELAGDDTLAVELTRARLLLN  165 (400)
T ss_pred             cCcHHHHHHHHHHhhhcCcch-HHHHHHHHHHHHh----------cccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHh
Confidence            588999999998877765433 2234444444444          78888888888888776445566677777778888


Q ss_pred             cCCchhHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCH-------hhHHHHHHHHhcCCC
Q 021791           97 AHKPQLSLDKLNFMKEKGICPTVATYTSVVKCLCSCGRIEDAEELLGEMVRNGVSPSA-------ETYNCFFKEYRGRKD  169 (307)
Q Consensus        97 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~-------~~~~~l~~~~~~~~~  169 (307)
                      .|+...|..-+.++.+.+.. ..........+|.+.|++.....++..+.+.+.--+.       .+|+.+++-....+.
T Consensus       166 ~~d~~aA~~~v~~ll~~~pr-~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~  244 (400)
T COG3071         166 RRDYPAARENVDQLLEMTPR-HPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNG  244 (400)
T ss_pred             CCCchhHHHHHHHHHHhCcC-ChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhcccc
Confidence            88888888888888877654 6677888888888888888888888888887655333       356666666666666


Q ss_pred             hhHHHHHHHHHhhcCCCCccHHHHHHHHHHHHhcCcHHHHHHHHHHHhhCCCCC--------------------------
Q 021791          170 ANGAMKLYRQMKEDDLCVPNIHTYNILIGMFMALNRMDMVREIWNHVKGSELGL--------------------------  223 (307)
Q Consensus       170 ~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~--------------------------  223 (307)
                      .+.-...|+.....-  ..++..-.+++.-+..+|+.++|.++..+..+++..|                          
T Consensus       245 ~~gL~~~W~~~pr~l--r~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~L~~~~~~l~~~d~~~l~k~~e~~l~  322 (400)
T COG3071         245 SEGLKTWWKNQPRKL--RNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPRLCRLIPRLRPGDPEPLIKAAEKWLK  322 (400)
T ss_pred             chHHHHHHHhccHHh--hcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChhHHHHHhhcCCCCchHHHHHHHHHHH
Confidence            666556666665543  3445555666667777777777777766655543332                          


Q ss_pred             ----CHHhHHHHHHHHHccCcHHHHHHHHHHHHHcCCCCcHhhHHHHHHHHhhchhHHHHHHHHHHhhh
Q 021791          224 ----DLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDE  288 (307)
Q Consensus       224 ----~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~  288 (307)
                          ++..+..+-..|.+++.|.+|...|+..++.  .|+..+|..+..++.+.|+.++|.++.++-.-
T Consensus       323 ~h~~~p~L~~tLG~L~~k~~~w~kA~~~leaAl~~--~~s~~~~~~la~~~~~~g~~~~A~~~r~e~L~  389 (400)
T COG3071         323 QHPEDPLLLSTLGRLALKNKLWGKASEALEAALKL--RPSASDYAELADALDQLGEPEEAEQVRREALL  389 (400)
T ss_pred             hCCCChhHHHHHHHHHHHhhHHHHHHHHHHHHHhc--CCChhhHHHHHHHHHHcCChHHHHHHHHHHHH
Confidence                4456788889999999999999999988764  79999999999999999999999999988653

>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]

Probab=99.59  E-value=7.7e-12  Score=94.52  Aligned_cols=224  Identities=15%  Similarity=0.090  Sum_probs=141.0

Q ss_pred             cCchhhHHHHHHHHHhcCCCCcHHHHHHHHHHHHhhCCCCcchhhHHHHHHHHHHHHHHHhcCCCCC---HHHHHHHHHH
Q 021791           17 INRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPNERFEKTIRNAEKVFDEMRVRGIEPD---VTSFSIVLHV   93 (307)
Q Consensus        17 ~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~ll~~   93 (307)
                      .++.++|.++|-+|.+.. +-+..+.-+|-.-+-+          .|.++.|+++...+.++.-.+.   ......|.+-
T Consensus        48 s~Q~dKAvdlF~e~l~~d-~~t~e~~ltLGnLfRs----------RGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~D  116 (389)
T COG2956          48 SNQPDKAVDLFLEMLQED-PETFEAHLTLGNLFRS----------RGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRD  116 (389)
T ss_pred             hcCcchHHHHHHHHHhcC-chhhHHHHHHHHHHHh----------cchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHH
Confidence            466778888888887641 1133344444444555          6777777777777765421111   1234455566


Q ss_pred             HHhcCCchhHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCC----HhhHHHHHHHHhcCCC
Q 021791           94 YSRAHKPQLSLDKLNFMKEKGICPTVATYTSVVKCLCSCGRIEDAEELLGEMVRNGVSPS----AETYNCFFKEYRGRKD  169 (307)
Q Consensus        94 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~  169 (307)
                      |...|-++.|+++|..+.+.+.. -......|+..|-...+|++|+++-+++.+.+..+.    ...|.-+...+....+
T Consensus       117 ym~aGl~DRAE~~f~~L~de~ef-a~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~  195 (389)
T COG2956         117 YMAAGLLDRAEDIFNQLVDEGEF-AEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSD  195 (389)
T ss_pred             HHHhhhhhHHHHHHHHHhcchhh-hHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhh
Confidence            77777777777777777765432 455667777777777777777777777766554433    2345555566666667


Q ss_pred             hhHHHHHHHHHhhcCCCCccHHHHHHHHHHHHhcCcHHHHHHHHHHHhhCCCCCCHHhHHHHHHHHHccCcHHHHHHHHH
Q 021791          170 ANGAMKLYRQMKEDDLCVPNIHTYNILIGMFMALNRMDMVREIWNHVKGSELGLDLDSYTMLIHGLCEKQKWKEACQYFV  249 (307)
Q Consensus       170 ~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~  249 (307)
                      .+.|..++.+....+  +.++..--.+.+.....|+++.|.+.|+.+.+.+...-..+...|..+|...|+.++....+.
T Consensus       196 ~d~A~~~l~kAlqa~--~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~  273 (389)
T COG2956         196 VDRARELLKKALQAD--KKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLR  273 (389)
T ss_pred             HHHHHHHHHHHHhhC--ccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHH
Confidence            777777777776665  445555555666677777777777777777776544445566667777777777777766666


Q ss_pred             HHHHc
Q 021791          250 EMIEK  254 (307)
Q Consensus       250 ~~~~~  254 (307)
                      ++.+.
T Consensus       274 ~~~~~  278 (389)
T COG2956         274 RAMET  278 (389)
T ss_pred             HHHHc
Confidence            66543

>PRK10049 pgaA outer membrane protein PgaA; Provisional

Probab=99.59  E-value=2.7e-11  Score=107.97  Aligned_cols=277  Identities=13%  Similarity=0.058  Sum_probs=195.2

Q ss_pred             HHHHHHHHHhcCchhhHHHHHHHHHhcCCCC-cHHHHHHHHHHHHhhCCCCcchhh------------------------
Q 021791            7 YTSLIYGWCKINRIDMAERFLGEMIERGVEP-NVVTYNVLLNGVCRRASLHPNERF------------------------   61 (307)
Q Consensus         7 ~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p-~~~~~~~ll~~~~~~~~~~~~~~~------------------------   61 (307)
                      +..+..++...|+.++|+..++++.+.  .| +...+..+..++...+....+...                        
T Consensus       119 ~~~la~~l~~~g~~~~Al~~l~~al~~--~P~~~~~~~~la~~l~~~~~~e~Al~~l~~~~~~p~~~~~l~~~~~~~~~r  196 (765)
T PRK10049        119 LLALAYVYKRAGRHWDELRAMTQALPR--APQTQQYPTEYVQALRNNRLSAPALGAIDDANLTPAEKRDLEADAAAELVR  196 (765)
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCChHHHHHHHHhCCCCHHHHHHHHHHHHHHHHH
Confidence            677778888888888888888888876  33 333444444444433332211000                        


Q ss_pred             ---------HHHH---HHHHHHHHHHHhc-CCCCCHH-HH----HHHHHHHHhcCCchhHHHHHHHHHHcCCC-CchhhH
Q 021791           62 ---------EKTI---RNAEKVFDEMRVR-GIEPDVT-SF----SIVLHVYSRAHKPQLSLDKLNFMKEKGIC-PTVATY  122 (307)
Q Consensus        62 ---------~~~~---~~a~~~~~~~~~~-~~~~~~~-~~----~~ll~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~  122 (307)
                               .+++   ++|++.++.+.+. .-.|+.. .+    ...+..+...|+.++|...|+.+.+.+.. |+. .-
T Consensus       197 ~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~-a~  275 (765)
T PRK10049        197 LSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQRARIDRLGALLARDRYKDVISEYQRLKAEGQIIPPW-AQ  275 (765)
T ss_pred             hhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCCCHH-HH
Confidence                     1122   5677777777754 1223221 11    11133456779999999999999887632 332 22


Q ss_pred             HHHHHHHHhcCChHHHHHHHHHHHhCCCCC---CHhhHHHHHHHHhcCCChhHHHHHHHHHhhcCC----------CCcc
Q 021791          123 TSVVKCLCSCGRIEDAEELLGEMVRNGVSP---SAETYNCFFKEYRGRKDANGAMKLYRQMKEDDL----------CVPN  189 (307)
Q Consensus       123 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~----------~~~~  189 (307)
                      ..+...|...|++++|+..|+++.......   .......+..++...|++++|...++.+.....          ..|+
T Consensus       276 ~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~  355 (765)
T PRK10049        276 RWVASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPN  355 (765)
T ss_pred             HHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCC
Confidence            235778999999999999999987653221   134566677788999999999999999987631          0123


Q ss_pred             ---HHHHHHHHHHHHhcCcHHHHHHHHHHHhhCCCCCCHHhHHHHHHHHHccCcHHHHHHHHHHHHHcCCCCc-HhhHHH
Q 021791          190 ---IHTYNILIGMFMALNRMDMVREIWNHVKGSELGLDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQ-KVTFET  265 (307)
Q Consensus       190 ---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~-~~~~~~  265 (307)
                         ...+..+...+...|+.++|+++++++.... +-+...+..+...+...|++++|+..+++.+..  .|+ ...+..
T Consensus       356 ~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~-P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l--~Pd~~~l~~~  432 (765)
T PRK10049        356 DDWLQGQSLLSQVAKYSNDLPQAEMRARELAYNA-PGNQGLRIDYASVLQARGWPRAAENELKKAEVL--EPRNINLEVE  432 (765)
T ss_pred             chHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh--CCCChHHHHH
Confidence               2355677888899999999999999998874 336788999999999999999999999999875  455 456666


Q ss_pred             HHHHHhhchhHHHHHHHHHHhhhc
Q 021791          266 LYRGLIQSDMLRTWRRLKKKLDEE  289 (307)
Q Consensus       266 l~~~~~~~g~~~~a~~~~~~~~~~  289 (307)
                      ....+...|++++|+.+++++.+.
T Consensus       433 ~a~~al~~~~~~~A~~~~~~ll~~  456 (765)
T PRK10049        433 QAWTALDLQEWRQMDVLTDDVVAR  456 (765)
T ss_pred             HHHHHHHhCCHHHHHHHHHHHHHh
Confidence            777889999999999999998654

>PRK12370 invasion protein regulator; Provisional

Probab=99.58  E-value=1.3e-11  Score=105.99  Aligned_cols=238  Identities=10%  Similarity=-0.027  Sum_probs=174.9

Q ss_pred             CcHHHHHHHHHHHHhhCCCCcchhhHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHh---------cCCchhHHHHH
Q 021791           37 PNVVTYNVLLNGVCRRASLHPNERFEKTIRNAEKVFDEMRVRGIEPDVTSFSIVLHVYSR---------AHKPQLSLDKL  107 (307)
Q Consensus        37 p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~---------~~~~~~a~~~~  107 (307)
                      .+...|...+++........     .+.+++|...|++..+.. +-+...|..+..++..         .+++++|...+
T Consensus       254 ~~~da~~~~lrg~~~~~~~~-----~~~~~~A~~~~~~Al~ld-P~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~  327 (553)
T PRK12370        254 NSIDSTMVYLRGKHELNQYT-----PYSLQQALKLLTQCVNMS-PNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHA  327 (553)
T ss_pred             CChHHHHHHHHhHHHHHccC-----HHHHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHH
Confidence            35566767777643322111     567889999999998773 2245556666555442         24478999999


Q ss_pred             HHHHHcCCCCchhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHhcCCChhHHHHHHHHHhhcCCCC
Q 021791          108 NFMKEKGICPTVATYTSVVKCLCSCGRIEDAEELLGEMVRNGVSPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDDLCV  187 (307)
Q Consensus       108 ~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~  187 (307)
                      ++..+.+.. +...+..+...+...|++++|...|++..+.++. +...+..+...+...|++++|...+++..+.+  +
T Consensus       328 ~~Al~ldP~-~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~-~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~--P  403 (553)
T PRK12370        328 IKATELDHN-NPQALGLLGLINTIHSEYIVGSLLFKQANLLSPI-SADIKYYYGWNLFMAGQLEEALQTINECLKLD--P  403 (553)
T ss_pred             HHHHhcCCC-CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--C
Confidence            999988644 7788888989999999999999999999987643 56788888999999999999999999999885  3


Q ss_pred             ccHHHHHHHHHHHHhcCcHHHHHHHHHHHhhCCCCCCHHhHHHHHHHHHccCcHHHHHHHHHHHHHcCCCCcHhh-HHHH
Q 021791          188 PNIHTYNILIGMFMALNRMDMVREIWNHVKGSELGLDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVT-FETL  266 (307)
Q Consensus       188 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~-~~~l  266 (307)
                      .+...+..++..+...|++++|...+++......+-+...+..+..++...|++++|...+.++...  .|+..+ ...+
T Consensus       404 ~~~~~~~~~~~~~~~~g~~eeA~~~~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~--~~~~~~~~~~l  481 (553)
T PRK12370        404 TRAAAGITKLWITYYHTGIDDAIRLGDELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQ--EITGLIAVNLL  481 (553)
T ss_pred             CChhhHHHHHHHHHhccCHHHHHHHHHHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhc--cchhHHHHHHH
Confidence            3333444455556678999999999999876532224556777888889999999999999987654  444443 4455


Q ss_pred             HHHHhhchhHHHHHHHHHHhhh
Q 021791          267 YRGLIQSDMLRTWRRLKKKLDE  288 (307)
Q Consensus       267 ~~~~~~~g~~~~a~~~~~~~~~  288 (307)
                      ...+...|  +.+...++++.+
T Consensus       482 ~~~~~~~g--~~a~~~l~~ll~  501 (553)
T PRK12370        482 YAEYCQNS--ERALPTIREFLE  501 (553)
T ss_pred             HHHHhccH--HHHHHHHHHHHH
Confidence            55667777  477776666644

>PRK10049 pgaA outer membrane protein PgaA; Provisional

Probab=99.57  E-value=3.8e-11  Score=107.04  Aligned_cols=266  Identities=9%  Similarity=0.024  Sum_probs=157.1

Q ss_pred             HHHHHHHhcCchhhHHHHHHHHHhcCCCCcHHHHHHHHHHHHhhCCCCcchhhHHHHHHHHHHHHHHHhcCCCCCHHHHH
Q 021791            9 SLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPNERFEKTIRNAEKVFDEMRVRGIEPDVTSFS   88 (307)
Q Consensus         9 ~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~   88 (307)
                      -.+......|+.++|++++.+.... -+.+...+..+..++..          .+++++|.++|++..+.. +.+...+.
T Consensus        20 d~~~ia~~~g~~~~A~~~~~~~~~~-~~~~a~~~~~lA~~~~~----------~g~~~~A~~~~~~al~~~-P~~~~a~~   87 (765)
T PRK10049         20 DWLQIALWAGQDAEVITVYNRYRVH-MQLPARGYAAVAVAYRN----------LKQWQNSLTLWQKALSLE-PQNDDYQR   87 (765)
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHhh-CCCCHHHHHHHHHHHHH----------cCCHHHHHHHHHHHHHhC-CCCHHHHH
Confidence            3445555666666666666666542 12334445555555555          555666666666665542 23344555


Q ss_pred             HHHHHHHhcCCchhHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHhcCC
Q 021791           89 IVLHVYSRAHKPQLSLDKLNFMKEKGICPTVATYTSVVKCLCSCGRIEDAEELLGEMVRNGVSPSAETYNCFFKEYRGRK  168 (307)
Q Consensus        89 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~  168 (307)
                      .+...+...|++++|...++++.+... .+.. +..+...+...|+.++|+..++++.+..+. +...+..+...+...+
T Consensus        88 ~la~~l~~~g~~~eA~~~l~~~l~~~P-~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~P~-~~~~~~~la~~l~~~~  164 (765)
T PRK10049         88 GLILTLADAGQYDEALVKAKQLVSGAP-DKAN-LLALAYVYKRAGRHWDELRAMTQALPRAPQ-TQQYPTEYVQALRNNR  164 (765)
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCC
Confidence            666666666666666666666665522 2344 555666666666666666666666655332 3333344444444444


Q ss_pred             Chh----------------------------------------------HHHHHHHHHhhcCCCCccHH-HHH----HHH
Q 021791          169 DAN----------------------------------------------GAMKLYRQMKEDDLCVPNIH-TYN----ILI  197 (307)
Q Consensus       169 ~~~----------------------------------------------~a~~~~~~~~~~~~~~~~~~-~~~----~l~  197 (307)
                      ..+                                              +|+..++.+.......|+.. .+.    ..+
T Consensus       165 ~~e~Al~~l~~~~~~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l  244 (765)
T PRK10049        165 LSAPALGAIDDANLTPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQRARIDRL  244 (765)
T ss_pred             ChHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHH
Confidence            444                                              34444444443210022211 111    113


Q ss_pred             HHHHhcCcHHHHHHHHHHHhhCCCC-CCHHhHHHHHHHHHccCcHHHHHHHHHHHHHcCCCC---cHhhHHHHHHHHhhc
Q 021791          198 GMFMALNRMDMVREIWNHVKGSELG-LDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLP---QKVTFETLYRGLIQS  273 (307)
Q Consensus       198 ~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p---~~~~~~~l~~~~~~~  273 (307)
                      .++...|++++|+..|+.+...+.. |+. .-..+..+|...|++++|+..|+++.+..-..   .......+..++...
T Consensus       245 ~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~-a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~  323 (765)
T PRK10049        245 GALLARDRYKDVISEYQRLKAEGQIIPPW-AQRWVASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLES  323 (765)
T ss_pred             HHHHHhhhHHHHHHHHHHhhccCCCCCHH-HHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhc
Confidence            3445778999999999999887532 332 22225678899999999999999987653111   123456677788999


Q ss_pred             hhHHHHHHHHHHhhhcC
Q 021791          274 DMLRTWRRLKKKLDEES  290 (307)
Q Consensus       274 g~~~~a~~~~~~~~~~~  290 (307)
                      |++++|.++++++.+..
T Consensus       324 g~~~eA~~~l~~~~~~~  340 (765)
T PRK10049        324 ENYPGALTVTAHTINNS  340 (765)
T ss_pred             ccHHHHHHHHHHHhhcC
Confidence            99999999999987654

>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW

Probab=99.56  E-value=1.4e-11  Score=94.37  Aligned_cols=203  Identities=11%  Similarity=0.036  Sum_probs=169.1

Q ss_pred             CcHHHHHHHHHHHHhhCCCCcchhhHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCchhHHHHHHHHHHcCCC
Q 021791           37 PNVVTYNVLLNGVCRRASLHPNERFEKTIRNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHKPQLSLDKLNFMKEKGIC  116 (307)
Q Consensus        37 p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~  116 (307)
                      .....+..+...+..          .+++++|.+.+++..+.. +.+...+..+...+...|++++|.+.+++..+....
T Consensus        29 ~~~~~~~~la~~~~~----------~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~   97 (234)
T TIGR02521        29 KAAKIRVQLALGYLE----------QGDLEVAKENLDKALEHD-PDDYLAYLALALYYQQLGELEKAEDSFRRALTLNPN   97 (234)
T ss_pred             cHHHHHHHHHHHHHH----------CCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence            345677777888888          788999999999988763 445778888999999999999999999999887543


Q ss_pred             CchhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCC-CCHhhHHHHHHHHhcCCChhHHHHHHHHHhhcCCCCccHHHHHH
Q 021791          117 PTVATYTSVVKCLCSCGRIEDAEELLGEMVRNGVS-PSAETYNCFFKEYRGRKDANGAMKLYRQMKEDDLCVPNIHTYNI  195 (307)
Q Consensus       117 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~  195 (307)
                       +...+..+...+...|++++|...+++....... .....+..+...+...|++++|...+.+.....  +.+...+..
T Consensus        98 -~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~  174 (234)
T TIGR02521        98 -NGDVLNNYGTFLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQID--PQRPESLLE  174 (234)
T ss_pred             -CHHHHHHHHHHHHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--cCChHHHHH
Confidence             6677888899999999999999999999875322 234567778888999999999999999998875  456778889


Q ss_pred             HHHHHHhcCcHHHHHHHHHHHhhCCCCCCHHhHHHHHHHHHccCcHHHHHHHHHHHHHc
Q 021791          196 LIGMFMALNRMDMVREIWNHVKGSELGLDLDSYTMLIHGLCEKQKWKEACQYFVEMIEK  254 (307)
Q Consensus       196 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~  254 (307)
                      +...+...|++++|...+++.... .+.+...+..+...+...|+.++|..+.+.+...
T Consensus       175 la~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~  232 (234)
T TIGR02521       175 LAELYYLRGQYKDARAYLERYQQT-YNQTAESLWLGIRIARALGDVAAAQRYGAQLQKL  232 (234)
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhh
Confidence            999999999999999999998876 3446677778888888999999999998887643

Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.

>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]

Probab=99.56  E-value=6.1e-11  Score=89.76  Aligned_cols=276  Identities=13%  Similarity=0.119  Sum_probs=206.1

Q ss_pred             HHHHHHHHHHHhcCchhhHHHHHHHHHhcCCCCc---HHHHHHHHHHHHhhCCCCcchhhHHHHHHHHHHHHHHHhcCCC
Q 021791            5 KMYTSLIYGWCKINRIDMAERFLGEMIERGVEPN---VVTYNVLLNGVCRRASLHPNERFEKTIRNAEKVFDEMRVRGIE   81 (307)
Q Consensus         5 ~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~---~~~~~~ll~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~   81 (307)
                      .+--+|.+.|.+.|..++|+++.+.+.++.-.+.   ....-.|-+-|..          .|-++.|+++|..+.+.| .
T Consensus        70 e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~----------aGl~DRAE~~f~~L~de~-e  138 (389)
T COG2956          70 EAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMA----------AGLLDRAEDIFNQLVDEG-E  138 (389)
T ss_pred             HHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHH----------hhhhhHHHHHHHHHhcch-h
Confidence            3445688899999999999999999987621111   1233344455555          788999999999998764 2


Q ss_pred             CCHHHHHHHHHHHHhcCCchhHHHHHHHHHHcCCCCc----hhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHhhH
Q 021791           82 PDVTSFSIVLHVYSRAHKPQLSLDKLNFMKEKGICPT----VATYTSVVKCLCSCGRIEDAEELLGEMVRNGVSPSAETY  157 (307)
Q Consensus        82 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~  157 (307)
                      --......|+..|-...+|++|+++-+++.+.+..+.    ...|.-+...+....+++.|..++++..+.+.+ ++..-
T Consensus       139 fa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~kAlqa~~~-cvRAs  217 (389)
T COG2956         139 FAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARELLKKALQADKK-CVRAS  217 (389)
T ss_pred             hhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhCcc-ceehh
Confidence            2455678899999999999999999999988765433    234555666667788999999999999887544 55566


Q ss_pred             HHHHHHHhcCCChhHHHHHHHHHhhcCCCCccHHHHHHHHHHHHhcCcHHHHHHHHHHHhhCCCCCCHHhHHHHHHHHHc
Q 021791          158 NCFFKEYRGRKDANGAMKLYRQMKEDDLCVPNIHTYNILIGMFMALNRMDMVREIWNHVKGSELGLDLDSYTMLIHGLCE  237 (307)
Q Consensus       158 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~  237 (307)
                      ..+.+.....|+++.|.+.++.+.+.+. .--+.+...|..+|...|+.++....+..+.+...  ....-..+.+.-..
T Consensus       218 i~lG~v~~~~g~y~~AV~~~e~v~eQn~-~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~~--g~~~~l~l~~lie~  294 (389)
T COG2956         218 IILGRVELAKGDYQKAVEALERVLEQNP-EYLSEVLEMLYECYAQLGKPAEGLNFLRRAMETNT--GADAELMLADLIEL  294 (389)
T ss_pred             hhhhHHHHhccchHHHHHHHHHHHHhCh-HHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHccC--CccHHHHHHHHHHH
Confidence            6677889999999999999999998864 44466788999999999999999999999887643  44444444444444


Q ss_pred             cCcHHHHHHHHHHHHHcCCCCcHhhHHHHHHHHhh---chhHHHHHHHHHHhhhcCCCCCccc
Q 021791          238 KQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQ---SDMLRTWRRLKKKLDEESITFGSEF  297 (307)
Q Consensus       238 ~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~---~g~~~~a~~~~~~~~~~~~~~~~~~  297 (307)
                      ..-.+.|..++.+-+.+  +|+...+..++..-..   .|..++-...+++|....+.-.+..
T Consensus       295 ~~G~~~Aq~~l~~Ql~r--~Pt~~gf~rl~~~~l~daeeg~~k~sL~~lr~mvge~l~~~~~Y  355 (389)
T COG2956         295 QEGIDAAQAYLTRQLRR--KPTMRGFHRLMDYHLADAEEGRAKESLDLLRDMVGEQLRRKPRY  355 (389)
T ss_pred             hhChHHHHHHHHHHHhh--CCcHHHHHHHHHhhhccccccchhhhHHHHHHHHHHHHhhcCCc
Confidence            44556777776666654  6999999999987543   4457777788888876665555443

>TIGR00540 hemY_coli hemY protein

Probab=99.56  E-value=1.8e-11  Score=101.46  Aligned_cols=263  Identities=9%  Similarity=-0.015  Sum_probs=182.8

Q ss_pred             hcCchhhHHHHHHHHHhcCCCCcHHHH-HHHHHHHHhhCCCCcchhhHHHHHHHHHHHHHHHhcCCCCCH--HHHHHHHH
Q 021791           16 KINRIDMAERFLGEMIERGVEPNVVTY-NVLLNGVCRRASLHPNERFEKTIRNAEKVFDEMRVRGIEPDV--TSFSIVLH   92 (307)
Q Consensus        16 ~~g~~~~a~~~~~~~~~~~~~p~~~~~-~~ll~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~ll~   92 (307)
                      ..|+++.|.+.+....+.  .|+...+ -....+...          .|+.+.|.+.+.+..+.  .|+.  ..-.....
T Consensus        96 ~~g~~~~A~~~l~~~~~~--~~~~~~~~llaA~aa~~----------~g~~~~A~~~l~~a~~~--~p~~~l~~~~~~a~  161 (409)
T TIGR00540        96 AEGDYAKAEKLIAKNADH--AAEPVLNLIKAAEAAQQ----------RGDEARANQHLEEAAEL--AGNDNILVEIARTR  161 (409)
T ss_pred             hCCCHHHHHHHHHHHhhc--CCCCHHHHHHHHHHHHH----------CCCHHHHHHHHHHHHHh--CCcCchHHHHHHHH
Confidence            469999999999887665  4554333 333344455          78899999999998765  3443  34444578


Q ss_pred             HHHhcCCchhHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHhhHH-HHHHHH---hcCC
Q 021791           93 VYSRAHKPQLSLDKLNFMKEKGICPTVATYTSVVKCLCSCGRIEDAEELLGEMVRNGVSPSAETYN-CFFKEY---RGRK  168 (307)
Q Consensus        93 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~-~l~~~~---~~~~  168 (307)
                      .+...|+++.|...++.+.+.... +..+...+...+...|++++|.+.+..+.+.+.. +...+. .-..++   ...+
T Consensus       162 l~l~~~~~~~Al~~l~~l~~~~P~-~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~-~~~~~~~l~~~a~~~~l~~~  239 (409)
T TIGR00540       162 ILLAQNELHAARHGVDKLLEMAPR-HKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLF-DDEEFADLEQKAEIGLLDEA  239 (409)
T ss_pred             HHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHHHHHHH
Confidence            888999999999999999998644 7778899999999999999999999999988654 333332 111111   2222


Q ss_pred             ChhHHHHHHHHHhhcCC--CCccHHHHHHHHHHHHhcCcHHHHHHHHHHHhhCCCCCCHHhH-HHHHHHHHccCcHHHHH
Q 021791          169 DANGAMKLYRQMKEDDL--CVPNIHTYNILIGMFMALNRMDMVREIWNHVKGSELGLDLDSY-TMLIHGLCEKQKWKEAC  245 (307)
Q Consensus       169 ~~~~a~~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~-~~li~~~~~~g~~~~a~  245 (307)
                      ..+++.+.+..+.....  .+.+...+..+...+...|+.++|.+++++..+.........+ ..........++.+.+.
T Consensus       240 ~~~~~~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~pd~~~~~~~~l~~~~~l~~~~~~~~~  319 (409)
T TIGR00540       240 MADEGIDGLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKLGDDRAISLPLCLPIPRLKPEDNEKLE  319 (409)
T ss_pred             HHhcCHHHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcccchhHHHHHhhhcCCCChHHHH
Confidence            22323334444433310  0247888999999999999999999999999987433221111 11222234457888999


Q ss_pred             HHHHHHHHcCCCCcH---hhHHHHHHHHhhchhHHHHHHHHHHhhhcCCCCCcc
Q 021791          246 QYFVEMIEKGLLPQK---VTFETLYRGLIQSDMLRTWRRLKKKLDEESITFGSE  296 (307)
Q Consensus       246 ~~~~~~~~~~~~p~~---~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~  296 (307)
                      +.+++..+.  .|+.   ....++...+.+.|++++|.+.|++.......++++
T Consensus       320 ~~~e~~lk~--~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~  371 (409)
T TIGR00540       320 KLIEKQAKN--VDDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDAN  371 (409)
T ss_pred             HHHHHHHHh--CCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHH
Confidence            999888865  3444   456688899999999999999999655544445443

This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.

>PRK14574 hmsH outer membrane protein; Provisional

Probab=99.54  E-value=5.5e-11  Score=104.86  Aligned_cols=224  Identities=13%  Similarity=0.105  Sum_probs=134.0

Q ss_pred             HHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCchhHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCChHHHHHH
Q 021791           62 EKTIRNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHKPQLSLDKLNFMKEKGICPTVATYTSVVKCLCSCGRIEDAEEL  141 (307)
Q Consensus        62 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~  141 (307)
                      .|++++|+++|+++.+.. +-+...+..++..+...++.++|++.++.+...  .|+...+..++..+...++..+|++.
T Consensus       115 ~gdyd~Aiely~kaL~~d-P~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~--dp~~~~~l~layL~~~~~~~~~AL~~  191 (822)
T PRK14574        115 EKRWDQALALWQSSLKKD-PTNPDLISGMIMTQADAGRGGVVLKQATELAER--DPTVQNYMTLSYLNRATDRNYDALQA  191 (822)
T ss_pred             cCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHhhcCCHHHHHHHHHHhccc--CcchHHHHHHHHHHHhcchHHHHHHH
Confidence            456666666666666653 223455555666666666666666666666555  33444443333333334455456666


Q ss_pred             HHHHHhCCCCCCHhhHHHHHHHHhcCCChhHHHHHHHH------------------------------------------
Q 021791          142 LGEMVRNGVSPSAETYNCFFKEYRGRKDANGAMKLYRQ------------------------------------------  179 (307)
Q Consensus       142 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~------------------------------------------  179 (307)
                      ++++.+..+. +...+..+..+..+.|-...|.++..+                                          
T Consensus       192 ~ekll~~~P~-n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~f~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r~~~~d~a  270 (822)
T PRK14574        192 SSEAVRLAPT-SEEVLKNHLEILQRNRIVEPALRLAKENPNLVSAEHYRQLERDAAAEQVRMAVLPTRSETERFDIADKA  270 (822)
T ss_pred             HHHHHHhCCC-CHHHHHHHHHHHHHcCCcHHHHHHHHhCccccCHHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHH
Confidence            6666665422 444555555555554444333333321                                          


Q ss_pred             ------HhhcCCCCcc-HH----HHHHHHHHHHhcCcHHHHHHHHHHHhhCCCCCCHHhHHHHHHHHHccCcHHHHHHHH
Q 021791          180 ------MKEDDLCVPN-IH----TYNILIGMFMALNRMDMVREIWNHVKGSELGLDLDSYTMLIHGLCEKQKWKEACQYF  248 (307)
Q Consensus       180 ------~~~~~~~~~~-~~----~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~  248 (307)
                            +...-...|. ..    ...-.+-++...|+..++++.++.+...+.+....+-..+..+|...+++++|..++
T Consensus       271 la~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~~l~  350 (822)
T PRK14574        271 LADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKAAPIL  350 (822)
T ss_pred             HHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHHHHH
Confidence                  1110000111 11    112334456677788888888888887765545557778888999999999999999


Q ss_pred             HHHHHcC-----CCCcHhhHHHHHHHHhhchhHHHHHHHHHHhhhc
Q 021791          249 VEMIEKG-----LLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDEE  289 (307)
Q Consensus       249 ~~~~~~~-----~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~  289 (307)
                      +.+....     ..++......|.-++..++++++|..+++++.+.
T Consensus       351 ~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~  396 (822)
T PRK14574        351 SSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQ  396 (822)
T ss_pred             HHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhc
Confidence            9886642     1223333567888899999999999999998763

>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]

Probab=99.53  E-value=4.8e-12  Score=104.11  Aligned_cols=250  Identities=11%  Similarity=0.045  Sum_probs=197.1

Q ss_pred             chhhHHHHHHHHHhcCCCCcHHHHHHHHHHHHhhCCCCcchhhHHHHHHHHHHHHHHHhcC--CCCCHHHHHHHHHHHHh
Q 021791           19 RIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPNERFEKTIRNAEKVFDEMRVRG--IEPDVTSFSIVLHVYSR   96 (307)
Q Consensus        19 ~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~ll~~~~~   96 (307)
                      +..+|...|..+.++ +.-+......+-++|..          ..++++|.++|+.+.+..  ..-+...|.+.+-.+-+
T Consensus       334 ~~~~A~~~~~klp~h-~~nt~wvl~q~GrayFE----------l~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~  402 (638)
T KOG1126|consen  334 NCREALNLFEKLPSH-HYNTGWVLSQLGRAYFE----------LIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQD  402 (638)
T ss_pred             HHHHHHHHHHhhHHh-cCCchHHHHHHHHHHHH----------HHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHh
Confidence            467899999986555 23234667778888988          899999999999998763  12256677777755433


Q ss_pred             cCCchhHHHHH-HHHHHcCCCCchhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHhcCCChhHHHH
Q 021791           97 AHKPQLSLDKL-NFMKEKGICPTVATYTSVVKCLCSCGRIEDAEELLGEMVRNGVSPSAETYNCFFKEYRGRKDANGAMK  175 (307)
Q Consensus        97 ~~~~~~a~~~~-~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~  175 (307)
                          +-++..+ +.+.... +..+.+|..+.++|.-.++.+.|+..|++..+.+.. ...+|+.+..-+....++|.|..
T Consensus       403 ----~v~Ls~Laq~Li~~~-~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQldp~-faYayTLlGhE~~~~ee~d~a~~  476 (638)
T KOG1126|consen  403 ----EVALSYLAQDLIDTD-PNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLDPR-FAYAYTLLGHESIATEEFDKAMK  476 (638)
T ss_pred             ----hHHHHHHHHHHHhhC-CCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccCCc-cchhhhhcCChhhhhHHHHhHHH
Confidence                2233433 3333332 347889999999999999999999999999986433 67889988888999999999999


Q ss_pred             HHHHHhhcCCCCccHHHHHHHHHHHHhcCcHHHHHHHHHHHhhCCCCCCHHhHHHHHHHHHccCcHHHHHHHHHHHHHcC
Q 021791          176 LYRQMKEDDLCVPNIHTYNILIGMFMALNRMDMVREIWNHVKGSELGLDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKG  255 (307)
Q Consensus       176 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~  255 (307)
                      .|+......  +.+...|.-+.-.|.+.++++.|+-.|+.+.+.+.. +......+...+-+.|+.++|+.++++.....
T Consensus       477 ~fr~Al~~~--~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~INP~-nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld  553 (638)
T KOG1126|consen  477 SFRKALGVD--PRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEINPS-NSVILCHIGRIQHQLKRKDKALQLYEKAIHLD  553 (638)
T ss_pred             HHHhhhcCC--chhhHHHHhhhhheeccchhhHHHHHHHhhhcCCcc-chhHHhhhhHHHHHhhhhhHHHHHHHHHHhcC
Confidence            999998765  566777888899999999999999999999987644 66667777788889999999999999998763


Q ss_pred             CCCcHhhHHHHHHHHhhchhHHHHHHHHHHhhhc
Q 021791          256 LLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDEE  289 (307)
Q Consensus       256 ~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~  289 (307)
                       +-|+.+--.-...+...++.++|.+.++++++.
T Consensus       554 -~kn~l~~~~~~~il~~~~~~~eal~~LEeLk~~  586 (638)
T KOG1126|consen  554 -PKNPLCKYHRASILFSLGRYVEALQELEELKEL  586 (638)
T ss_pred             -CCCchhHHHHHHHHHhhcchHHHHHHHHHHHHh
Confidence             235555555677788899999999999999764

>KOG1129 consensus TPR repeat-containing protein [General function prediction only]

Probab=99.52  E-value=3.7e-12  Score=96.46  Aligned_cols=237  Identities=14%  Similarity=0.076  Sum_probs=179.0

Q ss_pred             cHHHHHHHHHHHHhhCCCCcchhhHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCchhHHHHHHHHHHcCCCC
Q 021791           38 NVVTYNVLLNGVCRRASLHPNERFEKTIRNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHKPQLSLDKLNFMKEKGICP  117 (307)
Q Consensus        38 ~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~  117 (307)
                      |-.=-+.+-++|.+          .|.+.+|.+-|+...+.  .|-+.||..|-+.|.+..++..|+.++.+-.+. ++.
T Consensus       222 dwwWk~Q~gkCylr----------Lgm~r~AekqlqssL~q--~~~~dTfllLskvY~ridQP~~AL~~~~~gld~-fP~  288 (478)
T KOG1129|consen  222 DWWWKQQMGKCYLR----------LGMPRRAEKQLQSSLTQ--FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDS-FPF  288 (478)
T ss_pred             hHHHHHHHHHHHHH----------hcChhhhHHHHHHHhhc--CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhc-CCc
Confidence            33334667778888          77788888888887776  667788888888888888888888888887765 222


Q ss_pred             chhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHhcCCChhHHHHHHHHHhhcCCCCccHHHHHHHH
Q 021791          118 TVATYTSVVKCLCSCGRIEDAEELLGEMVRNGVSPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDDLCVPNIHTYNILI  197 (307)
Q Consensus       118 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~  197 (307)
                      |+....-+.+.+-..++.++|.++|+...+... .++.....+...|.-.++++-|+++++++...|  ..+...|+.+.
T Consensus       289 ~VT~l~g~ARi~eam~~~~~a~~lYk~vlk~~~-~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG--~~speLf~Nig  365 (478)
T KOG1129|consen  289 DVTYLLGQARIHEAMEQQEDALQLYKLVLKLHP-INVEAIACIAVGYFYDNNPEMALRYYRRILQMG--AQSPELFCNIG  365 (478)
T ss_pred             hhhhhhhhHHHHHHHHhHHHHHHHHHHHHhcCC-ccceeeeeeeeccccCCChHHHHHHHHHHHHhc--CCChHHHhhHH
Confidence            444445567777888888888888888877643 366677777777888888888898888888888  46677888888


Q ss_pred             HHHHhcCcHHHHHHHHHHHhhCCCCCCH--HhHHHHHHHHHccCcHHHHHHHHHHHHHcCCCCcHhhHHHHHHHHhhchh
Q 021791          198 GMFMALNRMDMVREIWNHVKGSELGLDL--DSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQSDM  275 (307)
Q Consensus       198 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~  275 (307)
                      -+|.-.+++|.++.-|.+....--.|+.  ..|-.+-...+..|++..|.+.|+-.+..+ .-+...++.|.-.-.+.|+
T Consensus       366 LCC~yaqQ~D~~L~sf~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d-~~h~ealnNLavL~~r~G~  444 (478)
T KOG1129|consen  366 LCCLYAQQIDLVLPSFQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSD-AQHGEALNNLAVLAARSGD  444 (478)
T ss_pred             HHHHhhcchhhhHHHHHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccC-cchHHHHHhHHHHHhhcCc
Confidence            8888888888888888887765444443  457777777788888888888888877653 3355678887777788888


Q ss_pred             HHHHHHHHHHhhhcCC
Q 021791          276 LRTWRRLKKKLDEESI  291 (307)
Q Consensus       276 ~~~a~~~~~~~~~~~~  291 (307)
                      +++|+.+++.......
T Consensus       445 i~~Arsll~~A~s~~P  460 (478)
T KOG1129|consen  445 ILGARSLLNAAKSVMP  460 (478)
T ss_pred             hHHHHHHHHHhhhhCc
Confidence            8888888887655443

>PRK14574 hmsH outer membrane protein; Provisional

Probab=99.51  E-value=3.3e-10  Score=100.04  Aligned_cols=159  Identities=12%  Similarity=0.031  Sum_probs=94.1

Q ss_pred             HHHhcCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHhcCCChhHHHHHHHHHhhcCC----CCccHHHHHHHHHHHHhc
Q 021791          128 CLCSCGRIEDAEELLGEMVRNGVSPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDDL----CVPNIHTYNILIGMFMAL  203 (307)
Q Consensus       128 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~----~~~~~~~~~~l~~~~~~~  203 (307)
                      ++...++..++++.|+.+...+.+....+-..+.++|...+++++|..+++++.....    .+++......|.-++...
T Consensus       301 aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~  380 (822)
T PRK14574        301 ALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNES  380 (822)
T ss_pred             HHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhc
Confidence            3445566666666666666655444445666667777777777777777777655421    022333345666677777


Q ss_pred             CcHHHHHHHHHHHhhCCC-------------CCCHH-hHHHHHHHHHccCcHHHHHHHHHHHHHcCCCCcHhhHHHHHHH
Q 021791          204 NRMDMVREIWNHVKGSEL-------------GLDLD-SYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRG  269 (307)
Q Consensus       204 ~~~~~a~~~~~~~~~~~~-------------~~~~~-~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~  269 (307)
                      +++++|..+++.+.+...             .||-. .+..++..+...|+..+|.+.++++... -+-|......+...
T Consensus       381 e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~gdl~~Ae~~le~l~~~-aP~n~~l~~~~A~v  459 (822)
T PRK14574        381 EQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVALNDLPTAQKKLEDLSST-APANQNLRIALASI  459 (822)
T ss_pred             ccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHH
Confidence            777777777777665211             11111 2333455566667777777777777654 23455566666666


Q ss_pred             HhhchhHHHHHHHHHHhh
Q 021791          270 LIQSDMLRTWRRLKKKLD  287 (307)
Q Consensus       270 ~~~~g~~~~a~~~~~~~~  287 (307)
                      +...|...+|++.++...
T Consensus       460 ~~~Rg~p~~A~~~~k~a~  477 (822)
T PRK14574        460 YLARDLPRKAEQELKAVE  477 (822)
T ss_pred             HHhcCCHHHHHHHHHHHh
Confidence            666666666666665543

>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.50  E-value=1.9e-10  Score=91.15  Aligned_cols=220  Identities=10%  Similarity=0.022  Sum_probs=174.2

Q ss_pred             HHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCchhHHHHHHHHHHcCC----------------------------
Q 021791           64 TIRNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHKPQLSLDKLNFMKEKGI----------------------------  115 (307)
Q Consensus        64 ~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~----------------------------  115 (307)
                      +.+++..-.+...+.|++-+...-+-...+.....|+++|+.+|+++.+...                            
T Consensus       242 q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~~skLs~LA~~  321 (559)
T KOG1155|consen  242 QHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKNDKSKLSYLAQN  321 (559)
T ss_pred             HHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhhhHHHHHHHHH
Confidence            4455555555555556554444444444444556667777777777666521                            


Q ss_pred             -----CCchhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHhcCCChhHHHHHHHHHhhcCCCCccH
Q 021791          116 -----CPTVATYTSVVKCLCSCGRIEDAEELLGEMVRNGVSPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDDLCVPNI  190 (307)
Q Consensus       116 -----~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~  190 (307)
                           +.-+.|..++.+-|+-.++.++|...|++..+.+.. ....|+.+..-|....+...|..-++...+.+  +.|-
T Consensus       322 v~~idKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLNp~-~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~--p~Dy  398 (559)
T KOG1155|consen  322 VSNIDKYRPETCCIIANYYSLRSEHEKAVMYFKRALKLNPK-YLSAWTLMGHEYVEMKNTHAAIESYRRAVDIN--PRDY  398 (559)
T ss_pred             HHHhccCCccceeeehhHHHHHHhHHHHHHHHHHHHhcCcc-hhHHHHHhhHHHHHhcccHHHHHHHHHHHhcC--chhH
Confidence                 112233444555577788999999999999987654 67789999999999999999999999999987  8899


Q ss_pred             HHHHHHHHHHHhcCcHHHHHHHHHHHhhCCCCCCHHhHHHHHHHHHccCcHHHHHHHHHHHHHcCCCCcHhhHHHHHHHH
Q 021791          191 HTYNILIGMFMALNRMDMVREIWNHVKGSELGLDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGL  270 (307)
Q Consensus       191 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~  270 (307)
                      ..|-.|.++|...+...-|+-.|++..... +.|...|..|.++|.+.++.++|++.|.+....|- .+...+..|...+
T Consensus       399 RAWYGLGQaYeim~Mh~YaLyYfqkA~~~k-PnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~d-te~~~l~~LakLy  476 (559)
T KOG1155|consen  399 RAWYGLGQAYEIMKMHFYALYYFQKALELK-PNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGD-TEGSALVRLAKLY  476 (559)
T ss_pred             HHHhhhhHHHHHhcchHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHhccHHHHHHHHHHHHhccc-cchHHHHHHHHHH
Confidence            999999999999999999999999999874 34899999999999999999999999999998763 3667899999999


Q ss_pred             hhchhHHHHHHHHHHhhh
Q 021791          271 IQSDMLRTWRRLKKKLDE  288 (307)
Q Consensus       271 ~~~g~~~~a~~~~~~~~~  288 (307)
                      .+.++.++|.+.+++..+
T Consensus       477 e~l~d~~eAa~~yek~v~  494 (559)
T KOG1155|consen  477 EELKDLNEAAQYYEKYVE  494 (559)
T ss_pred             HHHHhHHHHHHHHHHHHH
Confidence            999999999999988755

>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]

Probab=99.50  E-value=1e-12  Score=111.28  Aligned_cols=248  Identities=20%  Similarity=0.207  Sum_probs=178.6

Q ss_pred             HHHHHHHhcCCCCcHHHHHHHHHHHHhhCCCCcchhhHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCchhHH
Q 021791           25 RFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPNERFEKTIRNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHKPQLSL  104 (307)
Q Consensus        25 ~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~  104 (307)
                      .++..+...|+.|+..||..+|..|+.          .|+++.|- +|.-|.-...+.+...|+.++.+....++.+.+.
T Consensus        11 nfla~~e~~gi~PnRvtyqsLiarYc~----------~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk   79 (1088)
T KOG4318|consen   11 NFLALHEISGILPNRVTYQSLIARYCT----------KGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK   79 (1088)
T ss_pred             hHHHHHHHhcCCCchhhHHHHHHHHcc----------cCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC
Confidence            456778888999999999999999999          66667777 8888888888889999999999999999888776


Q ss_pred             HHHHHHHHcCCCCchhhHHHHHHHHHhcCChHHHHHH---HHHHHh----CCCCCCHhhH---------------HHHHH
Q 021791          105 DKLNFMKEKGICPTVATYTSVVKCLCSCGRIEDAEEL---LGEMVR----NGVSPSAETY---------------NCFFK  162 (307)
Q Consensus       105 ~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~---~~~~~~----~~~~~~~~~~---------------~~l~~  162 (307)
                                 .|.+.||..|..+|...||+.--..+   +..+..    .|.. ....+               ...+.
T Consensus        80 -----------ep~aDtyt~Ll~ayr~hGDli~fe~veqdLe~i~~sfs~~Gvg-s~e~~fl~k~~c~p~~lpda~n~il  147 (1088)
T KOG4318|consen   80 -----------EPLADTYTNLLKAYRIHGDLILFEVVEQDLESINQSFSDHGVG-SPERWFLMKIHCCPHSLPDAENAIL  147 (1088)
T ss_pred             -----------CCchhHHHHHHHHHHhccchHHHHHHHHHHHHHHhhhhhhccC-cHHHHHHhhcccCcccchhHHHHHH
Confidence                       67889999999999999987653222   222221    1221 11111               11222


Q ss_pred             HHhcCCChhHHHHHHHHHhhcCCCCccHHHHHHHHHHHHhcCcHHHHHHHHHHHhhCCCCCCHHhHHHHHHHHHccCcHH
Q 021791          163 EYRGRKDANGAMKLYRQMKEDDLCVPNIHTYNILIGMFMALNRMDMVREIWNHVKGSELGLDLDSYTMLIHGLCEKQKWK  242 (307)
Q Consensus       163 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~  242 (307)
                      .....|-++.+++++..+.......|..+    +++-+..  .+...+++....+...-.|++.+|..++.+-..+|+.+
T Consensus       148 llv~eglwaqllkll~~~Pvsa~~~p~~v----fLrqnv~--~ntpvekLl~~cksl~e~~~s~~l~a~l~~alaag~~d  221 (1088)
T KOG4318|consen  148 LLVLEGLWAQLLKLLAKVPVSAWNAPFQV----FLRQNVV--DNTPVEKLLNMCKSLVEAPTSETLHAVLKRALAAGDVD  221 (1088)
T ss_pred             HHHHHHHHHHHHHHHhhCCcccccchHHH----HHHHhcc--CCchHHHHHHHHHHhhcCCChHHHHHHHHHHHhcCchh
Confidence            23344555555555555544332122111    2333322  23445555555554333689999999999999999999


Q ss_pred             HHHHHHHHHHHcCCCCcHhhHHHHHHHHhhchhHHHHHHHHHHhhhcCCCCCcccCCCCCCC
Q 021791          243 EACQYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDEESITFGSEFQNYHFKP  304 (307)
Q Consensus       243 ~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~  304 (307)
                      .|..++.+|.+.|++.+.+-|..|+-+   .++...++.+++-|.+.|+.+++++....+-|
T Consensus       222 ~Ak~ll~emke~gfpir~HyFwpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~adyvip  280 (1088)
T KOG4318|consen  222 GAKNLLYEMKEKGFPIRAHYFWPLLLG---INAAQVFEFVLRGMQEKGVQPGSETQADYVIP  280 (1088)
T ss_pred             hHHHHHHHHHHcCCCcccccchhhhhc---CccchHHHHHHHHHHHhcCCCCcchhHHHHHh
Confidence            999999999999999999999988866   88889999999999999999999987655443

>PF13041 PPR_2: PPR repeat family

Probab=99.50  E-value=1.1e-13  Score=77.88  Aligned_cols=50  Identities=36%  Similarity=0.683  Sum_probs=36.1

Q ss_pred             CCHHhHHHHHHHHHccCcHHHHHHHHHHHHHcCCCCcHhhHHHHHHHHhh
Q 021791          223 LDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQ  272 (307)
Q Consensus       223 ~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~  272 (307)
                      ||..+||.+|.+|++.|++++|.++|++|.+.|+.||..||+.++++|++
T Consensus         1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k   50 (50)
T PF13041_consen    1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK   50 (50)
T ss_pred             CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence            56677777777777777777777777777777777777777777777653

>KOG1129 consensus TPR repeat-containing protein [General function prediction only]

Probab=99.49  E-value=9.3e-12  Score=94.34  Aligned_cols=211  Identities=12%  Similarity=0.045  Sum_probs=177.4

Q ss_pred             CHHHHHHHHHHHHhcCCchhHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHhhHHHHHH
Q 021791           83 DVTSFSIVLHVYSRAHKPQLSLDKLNFMKEKGICPTVATYTSVVKCLCSCGRIEDAEELLGEMVRNGVSPSAETYNCFFK  162 (307)
Q Consensus        83 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~  162 (307)
                      |-.-=+-+.++|.+.|.+.+|.+.++...+.  .|-+.||..|-+.|.+..+++.|+.++.+-.+. .+.++.....+.+
T Consensus       222 dwwWk~Q~gkCylrLgm~r~AekqlqssL~q--~~~~dTfllLskvY~ridQP~~AL~~~~~gld~-fP~~VT~l~g~AR  298 (478)
T KOG1129|consen  222 DWWWKQQMGKCYLRLGMPRRAEKQLQSSLTQ--FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDS-FPFDVTYLLGQAR  298 (478)
T ss_pred             hHHHHHHHHHHHHHhcChhhhHHHHHHHhhc--CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhc-CCchhhhhhhhHH
Confidence            4444467889999999999999999998877  456778999999999999999999999998876 3335555567778


Q ss_pred             HHhcCCChhHHHHHHHHHhhcCCCCccHHHHHHHHHHHHhcCcHHHHHHHHHHHhhCCCCCCHHhHHHHHHHHHccCcHH
Q 021791          163 EYRGRKDANGAMKLYRQMKEDDLCVPNIHTYNILIGMFMALNRMDMVREIWNHVKGSELGLDLDSYTMLIHGLCEKQKWK  242 (307)
Q Consensus       163 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~  242 (307)
                      .+...++.++|.++++...+..  +.++....++...|.-.++.+.|...++++.+.|+. ++..|+.+.-+|.-.++++
T Consensus       299 i~eam~~~~~a~~lYk~vlk~~--~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~-speLf~NigLCC~yaqQ~D  375 (478)
T KOG1129|consen  299 IHEAMEQQEDALQLYKLVLKLH--PINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQ-SPELFCNIGLCCLYAQQID  375 (478)
T ss_pred             HHHHHHhHHHHHHHHHHHHhcC--CccceeeeeeeeccccCCChHHHHHHHHHHHHhcCC-ChHHHhhHHHHHHhhcchh
Confidence            8999999999999999999886  678888888888899999999999999999999987 9999999999999999999


Q ss_pred             HHHHHHHHHHHcCCCCcH--hhHHHHHHHHhhchhHHHHHHHHHHhhhcCCCCCcccCC
Q 021791          243 EACQYFVEMIEKGLLPQK--VTFETLYRGLIQSDMLRTWRRLKKKLDEESITFGSEFQN  299 (307)
Q Consensus       243 ~a~~~~~~~~~~~~~p~~--~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~  299 (307)
                      -++.-|++.+..--.|+.  ..|..+-......|++..|.+.|+.....+-..+..+.|
T Consensus       376 ~~L~sf~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~h~ealnN  434 (478)
T KOG1129|consen  376 LVLPSFQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQHGEALNN  434 (478)
T ss_pred             hhHHHHHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCcchHHHHHh
Confidence            999999999876444443  467778888889999999999999877666555544443

>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]

Probab=99.47  E-value=5.4e-12  Score=106.97  Aligned_cols=244  Identities=17%  Similarity=0.207  Sum_probs=167.8

Q ss_pred             CccHHHHHHHHHHHHhcCchhhHHHHHHHHHhcCCCCcHHHHHHHHHHHHhhCCCCcchhhHHHHHHHHHHHHHHHhcCC
Q 021791            1 MPNVKMYTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPNERFEKTIRNAEKVFDEMRVRGI   80 (307)
Q Consensus         1 ~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~   80 (307)
                      +|+-++|..+|.-|+..|+.+.|- +|.-|.-+..+.+...++.++.+....++          .+.+.           
T Consensus        22 ~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And----------~Enpk-----------   79 (1088)
T KOG4318|consen   22 LPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEAND----------AENPK-----------   79 (1088)
T ss_pred             CCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhccccccc----------ccCCC-----------
Confidence            589999999999999999999998 99999888888888999999988887443          33332           


Q ss_pred             CCCHHHHHHHHHHHHhcCCchh---HHHHHHHH----HHcCCCCchhhHHHHHHH--------------HHhcCChHHHH
Q 021791           81 EPDVTSFSIVLHVYSRAHKPQL---SLDKLNFM----KEKGICPTVATYTSVVKC--------------LCSCGRIEDAE  139 (307)
Q Consensus        81 ~~~~~~~~~ll~~~~~~~~~~~---a~~~~~~~----~~~~~~~~~~~~~~ll~~--------------~~~~~~~~~a~  139 (307)
                      .|.+.+|..|+.+|...||...   +.+.+..+    ...|+......+-..+++              ..-.|-++.+.
T Consensus        80 ep~aDtyt~Ll~ayr~hGDli~fe~veqdLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~n~illlv~eglwaqll  159 (1088)
T KOG4318|consen   80 EPLADTYTNLLKAYRIHGDLILFEVVEQDLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAENAILLLVLEGLWAQLL  159 (1088)
T ss_pred             CCchhHHHHHHHHHHhccchHHHHHHHHHHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHHHHHHHHHHHHHHHHHH
Confidence            6789999999999999998654   22222222    223332111122112122              22223333344


Q ss_pred             HHHHHHHhCCCCCCHhhHHHHHHHHhcCCChhHHHHHHHHHhhcCCCCccHHHHHHHHHHHHhcCcHHHHHHHHHHHhhC
Q 021791          140 ELLGEMVRNGVSPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDDLCVPNIHTYNILIGMFMALNRMDMVREIWNHVKGS  219 (307)
Q Consensus       140 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~  219 (307)
                      +++..+...... .  .+..+++-+.....+  ..++......... .|++.+|.+++..-...|+.+.|..++.+|++.
T Consensus       160 kll~~~Pvsa~~-~--p~~vfLrqnv~~ntp--vekLl~~cksl~e-~~~s~~l~a~l~~alaag~~d~Ak~ll~emke~  233 (1088)
T KOG4318|consen  160 KLLAKVPVSAWN-A--PFQVFLRQNVVDNTP--VEKLLNMCKSLVE-APTSETLHAVLKRALAAGDVDGAKNLLYEMKEK  233 (1088)
T ss_pred             HHHhhCCccccc-c--hHHHHHHHhccCCch--HHHHHHHHHHhhc-CCChHHHHHHHHHHHhcCchhhHHHHHHHHHHc
Confidence            333333221110 1  111124444333332  2333333332222 589999999999999999999999999999999


Q ss_pred             CCCCCHHhHHHHHHHHHccCcHHHHHHHHHHHHHcCCCCcHhhHHHHHHHHhhchh
Q 021791          220 ELGLDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQSDM  275 (307)
Q Consensus       220 ~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~  275 (307)
                      |++.+.+-|..++-+   .++...+..+++.|...|+.|+..|+.-.+-.+...|.
T Consensus       234 gfpir~HyFwpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~N~~  286 (1088)
T KOG4318|consen  234 GFPIRAHYFWPLLLG---INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLSNGQ  286 (1088)
T ss_pred             CCCcccccchhhhhc---CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhcchh
Confidence            999999988888876   78888899999999999999999999888877777554

>KOG2003 consensus TPR repeat-containing protein [General function prediction only]

Probab=99.46  E-value=4.5e-11  Score=94.69  Aligned_cols=253  Identities=11%  Similarity=0.063  Sum_probs=188.6

Q ss_pred             HHHHhcCchhhHHHHHHHHHhcCCCCcHHHHHHHHHHH-HhhCC-CCcchh------------------------hHHHH
Q 021791           12 YGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGV-CRRAS-LHPNER------------------------FEKTI   65 (307)
Q Consensus        12 ~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~-~~~~~-~~~~~~------------------------~~~~~   65 (307)
                      ..+.+.|+++.|.+++.-+.+..-+.-...-+.|-..+ .+.|. +..+..                        ..|++
T Consensus       427 ~~~lk~~d~~~aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~dryn~~a~~nkgn~~f~ngd~  506 (840)
T KOG2003|consen  427 GELLKNGDIEGAIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNIDRYNAAALTNKGNIAFANGDL  506 (840)
T ss_pred             HHHHhccCHHHHHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhcccccCHHHhhcCCceeeecCcH
Confidence            45788999999999998887663332222222222222 21111 111111                        16888


Q ss_pred             HHHHHHHHHHHhcCCCCCHHHHHHHHH---HHHhcCCchhHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCChHHHHHHH
Q 021791           66 RNAEKVFDEMRVRGIEPDVTSFSIVLH---VYSRAHKPQLSLDKLNFMKEKGICPTVATYTSVVKCLCSCGRIEDAEELL  142 (307)
Q Consensus        66 ~~a~~~~~~~~~~~~~~~~~~~~~ll~---~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~  142 (307)
                      ++|.+.|++....    |...-.+|..   .+-..|++++|++.|-.+... +..+..+...+.+.|-...+..+|.+++
T Consensus       507 dka~~~ykeal~n----dasc~ealfniglt~e~~~~ldeald~f~klh~i-l~nn~evl~qianiye~led~aqaie~~  581 (840)
T KOG2003|consen  507 DKAAEFYKEALNN----DASCTEALFNIGLTAEALGNLDEALDCFLKLHAI-LLNNAEVLVQIANIYELLEDPAQAIELL  581 (840)
T ss_pred             HHHHHHHHHHHcC----chHHHHHHHHhcccHHHhcCHHHHHHHHHHHHHH-HHhhHHHHHHHHHHHHHhhCHHHHHHHH
Confidence            9999999888765    4433333332   456788999999998877554 2337778888899999999999999998


Q ss_pred             HHHHhCCCCCCHhhHHHHHHHHhcCCChhHHHHHHHHHhhcCCCCccHHHHHHHHHHHHhcCcHHHHHHHHHHHhhCCCC
Q 021791          143 GEMVRNGVSPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDDLCVPNIHTYNILIGMFMALNRMDMVREIWNHVKGSELG  222 (307)
Q Consensus       143 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~  222 (307)
                      .+.... ++.|+.....|...|-+.|+...|++.+-.-.+.  ++.+..+...|...|....-+++++..|++..-  +.
T Consensus       582 ~q~~sl-ip~dp~ilskl~dlydqegdksqafq~~ydsyry--fp~nie~iewl~ayyidtqf~ekai~y~ekaal--iq  656 (840)
T KOG2003|consen  582 MQANSL-IPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRY--FPCNIETIEWLAAYYIDTQFSEKAINYFEKAAL--IQ  656 (840)
T ss_pred             HHhccc-CCCCHHHHHHHHHHhhcccchhhhhhhhhhcccc--cCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHh--cC
Confidence            877654 4557888999999999999999999888766554  377889999999999999999999999998765  47


Q ss_pred             CCHHhHHHHHHHH-HccCcHHHHHHHHHHHHHcCCCCcHhhHHHHHHHHhhchh
Q 021791          223 LDLDSYTMLIHGL-CEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQSDM  275 (307)
Q Consensus       223 ~~~~~~~~li~~~-~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~  275 (307)
                      |+..-|..|+..| .+.|++.+|+++++....+ ++-|..++..|++.+...|.
T Consensus       657 p~~~kwqlmiasc~rrsgnyqka~d~yk~~hrk-fpedldclkflvri~~dlgl  709 (840)
T KOG2003|consen  657 PNQSKWQLMIASCFRRSGNYQKAFDLYKDIHRK-FPEDLDCLKFLVRIAGDLGL  709 (840)
T ss_pred             ccHHHHHHHHHHHHHhcccHHHHHHHHHHHHHh-CccchHHHHHHHHHhccccc
Confidence            8999999887655 6789999999999998775 77788899999999888774

>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]

Probab=99.42  E-value=5.7e-10  Score=80.73  Aligned_cols=199  Identities=11%  Similarity=-0.013  Sum_probs=171.4

Q ss_pred             HHHHHHHHHHhcCCchhHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHh
Q 021791           86 SFSIVLHVYSRAHKPQLSLDKLNFMKEKGICPTVATYTSVVKCLCSCGRIEDAEELLGEMVRNGVSPSAETYNCFFKEYR  165 (307)
Q Consensus        86 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~  165 (307)
                      +..-|.-.|...|+...|.+-+++..+.... +..+|..+...|-+.|+.+.|.+-|++....... +..+.|.....+|
T Consensus        37 arlqLal~YL~~gd~~~A~~nlekAL~~DPs-~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~-~GdVLNNYG~FLC  114 (250)
T COG3063          37 ARLQLALGYLQQGDYAQAKKNLEKALEHDPS-YYLAHLVRAHYYQKLGENDLADESYRKALSLAPN-NGDVLNNYGAFLC  114 (250)
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCC-ccchhhhhhHHHH
Confidence            3455677899999999999999999998644 7888999999999999999999999999987554 7788899999999


Q ss_pred             cCCChhHHHHHHHHHhhcCCCCccHHHHHHHHHHHHhcCcHHHHHHHHHHHhhCCCCCCHHhHHHHHHHHHccCcHHHHH
Q 021791          166 GRKDANGAMKLYRQMKEDDLCVPNIHTYNILIGMFMALNRMDMVREIWNHVKGSELGLDLDSYTMLIHGLCEKQKWKEAC  245 (307)
Q Consensus       166 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~  245 (307)
                      ..|++++|...|++.........-..+|..+.-+..+.|+.+.|.+.+++....... ...+.-.+.......|++-.|.
T Consensus       115 ~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~-~~~~~l~~a~~~~~~~~y~~Ar  193 (250)
T COG3063         115 AQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQ-FPPALLELARLHYKAGDYAPAR  193 (250)
T ss_pred             hCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcC-CChHHHHHHHHHHhcccchHHH
Confidence            999999999999999987654555778999998999999999999999999987533 5667788888899999999999


Q ss_pred             HHHHHHHHcCCCCcHhhHHHHHHHHhhchhHHHHHHHHHHhhh
Q 021791          246 QYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDE  288 (307)
Q Consensus       246 ~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~  288 (307)
                      ..++.....+. ++..+....|+.-...|+.+.+.+.=..+..
T Consensus       194 ~~~~~~~~~~~-~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r  235 (250)
T COG3063         194 LYLERYQQRGG-AQAESLLLGIRIAKRLGDRAAAQRYQAQLQR  235 (250)
T ss_pred             HHHHHHHhccc-ccHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence            99999988765 8999998889998999999888877666543

>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]

Probab=99.41  E-value=2.6e-09  Score=83.30  Aligned_cols=236  Identities=11%  Similarity=0.047  Sum_probs=185.3

Q ss_pred             HHHHHHHHHHHHhcCchhhHHHHHHHHHhcCCCCcHHHHHHHHHHHHhhCCCCcchhhHHHHHHHHHHHHHHHhcCCCCC
Q 021791            4 VKMYTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPNERFEKTIRNAEKVFDEMRVRGIEPD   83 (307)
Q Consensus         4 ~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~   83 (307)
                      ..++-+........|+.+.|..-.+++.+.+ +-+........++|.+          .|++.+...++..+.+.|.-.+
T Consensus       153 l~v~ltrarlll~~~d~~aA~~~v~~ll~~~-pr~~~vlrLa~r~y~~----------~g~~~~ll~~l~~L~ka~~l~~  221 (400)
T COG3071         153 LAVELTRARLLLNRRDYPAARENVDQLLEMT-PRHPEVLRLALRAYIR----------LGAWQALLAILPKLRKAGLLSD  221 (400)
T ss_pred             HHHHHHHHHHHHhCCCchhHHHHHHHHHHhC-cCChHHHHHHHHHHHH----------hccHHHHHHHHHHHHHccCCCh
Confidence            3444455566667777777777777776653 2355677777788888          8899999999999999886544


Q ss_pred             H-------HHHHHHHHHHHhcCCchhHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHhh
Q 021791           84 V-------TSFSIVLHVYSRAHKPQLSLDKLNFMKEKGICPTVATYTSVVKCLCSCGRIEDAEELLGEMVRNGVSPSAET  156 (307)
Q Consensus        84 ~-------~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~  156 (307)
                      .       .+|+.+++-....+..+.-...++...++ .+.++..-..++.-+.++|+.++|.++.++..+.+..|+   
T Consensus       222 ~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~~~pr~-lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~---  297 (400)
T COG3071         222 EEAARLEQQAWEGLLQQARDDNGSEGLKTWWKNQPRK-LRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPR---  297 (400)
T ss_pred             HHHHHHHHHHHHHHHHHHhccccchHHHHHHHhccHH-hhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChh---
Confidence            4       46888888888887778777788777654 344677778889999999999999999999998876655   


Q ss_pred             HHHHHHHHhcCCChhHHHHHHHHHhhcCCCCccHHHHHHHHHHHHhcCcHHHHHHHHHHHhhCCCCCCHHhHHHHHHHHH
Q 021791          157 YNCFFKEYRGRKDANGAMKLYRQMKEDDLCVPNIHTYNILIGMFMALNRMDMVREIWNHVKGSELGLDLDSYTMLIHGLC  236 (307)
Q Consensus       157 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~  236 (307)
                       -...-.+.+-++.+.-.+..++-.+..  +.++..+.+|...|.+.+.|.+|...|+...+.  .|+..+|+.+..++.
T Consensus       298 -L~~~~~~l~~~d~~~l~k~~e~~l~~h--~~~p~L~~tLG~L~~k~~~w~kA~~~leaAl~~--~~s~~~~~~la~~~~  372 (400)
T COG3071         298 -LCRLIPRLRPGDPEPLIKAAEKWLKQH--PEDPLLLSTLGRLALKNKLWGKASEALEAALKL--RPSASDYAELADALD  372 (400)
T ss_pred             -HHHHHhhcCCCCchHHHHHHHHHHHhC--CCChhHHHHHHHHHHHhhHHHHHHHHHHHHHhc--CCChhhHHHHHHHHH
Confidence             222334667888888888888777765  456688999999999999999999999987775  789999999999999


Q ss_pred             ccCcHHHHHHHHHHHHHcCCCCc
Q 021791          237 EKQKWKEACQYFVEMIEKGLLPQ  259 (307)
Q Consensus       237 ~~g~~~~a~~~~~~~~~~~~~p~  259 (307)
                      +.|+..+|.++.++.+-.-.+|+
T Consensus       373 ~~g~~~~A~~~r~e~L~~~~~~~  395 (400)
T COG3071         373 QLGEPEEAEQVRREALLLTRQPN  395 (400)
T ss_pred             HcCChHHHHHHHHHHHHHhcCCC
Confidence            99999999999998875544443

>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]

Probab=99.39  E-value=4.1e-09  Score=90.14  Aligned_cols=264  Identities=13%  Similarity=0.066  Sum_probs=169.4

Q ss_pred             HHHHhcCchhhHHHHHHHHHhcCCCCcHHHHHHHHHHHHhhCCCCcchhhHHHHHHHHHHHHHHHhcCCCCCHHHHHHHH
Q 021791           12 YGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPNERFEKTIRNAEKVFDEMRVRGIEPDVTSFSIVL   91 (307)
Q Consensus        12 ~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll   91 (307)
                      ......|++++|.+++.+.++.. +.+...|.+|-..|-.          .|+.+++...+--..... +.|...|..+.
T Consensus       147 N~lfarg~~eeA~~i~~EvIkqd-p~~~~ay~tL~~IyEq----------rGd~eK~l~~~llAAHL~-p~d~e~W~~la  214 (895)
T KOG2076|consen  147 NNLFARGDLEEAEEILMEVIKQD-PRNPIAYYTLGEIYEQ----------RGDIEKALNFWLLAAHLN-PKDYELWKRLA  214 (895)
T ss_pred             HHHHHhCCHHHHHHHHHHHHHhC-ccchhhHHHHHHHHHH----------cccHHHHHHHHHHHHhcC-CCChHHHHHHH
Confidence            33444599999999999998873 4467789999999988          677777776665444432 34667777777


Q ss_pred             HHHHhcCCchhHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHh----hHHHHHHHHhcC
Q 021791           92 HVYSRAHKPQLSLDKLNFMKEKGICPTVATYTSVVKCLCSCGRIEDAEELLGEMVRNGVSPSAE----TYNCFFKEYRGR  167 (307)
Q Consensus        92 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~----~~~~l~~~~~~~  167 (307)
                      ....+.|+++.|.-.|.+.++... ++...+-.-...|-+.|+...|...|.++.....+.|..    .....+..+...
T Consensus       215 dls~~~~~i~qA~~cy~rAI~~~p-~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~  293 (895)
T KOG2076|consen  215 DLSEQLGNINQARYCYSRAIQANP-SNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITH  293 (895)
T ss_pred             HHHHhcccHHHHHHHHHHHHhcCC-cchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHh
Confidence            777788888888888888777643 244455555667777788888888877777654322222    222334555566


Q ss_pred             CChhHHHHHHHHHhhcCCCCccHHHHHHHHHHHHhcCcHHHHHHHHHHHhh-----------------------------
Q 021791          168 KDANGAMKLYRQMKEDDLCVPNIHTYNILIGMFMALNRMDMVREIWNHVKG-----------------------------  218 (307)
Q Consensus       168 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-----------------------------  218 (307)
                      ++-+.|.+.++.....+.-..+...++.++..+.+...++.+......+..                             
T Consensus       294 ~~~e~a~~~le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~  373 (895)
T KOG2076|consen  294 NERERAAKALEGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKE  373 (895)
T ss_pred             hHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCC
Confidence            666777777766655322234444555566666666666655555444433                             


Q ss_pred             --------------------------------CCCC--CCHHhHHHHHHHHHccCcHHHHHHHHHHHHHcCCCCcHhhHH
Q 021791          219 --------------------------------SELG--LDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFE  264 (307)
Q Consensus       219 --------------------------------~~~~--~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~  264 (307)
                                                      .+..  -+...|.-+..+|...|++++|+.+|..+.+.-..-+...|.
T Consensus       374 ~s~~l~v~rl~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~  453 (895)
T KOG2076|consen  374 LSYDLRVIRLMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWY  453 (895)
T ss_pred             CCccchhHhHhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhH
Confidence                                            0000  022345566677777777777777777777653333455677


Q ss_pred             HHHHHHhhchhHHHHHHHHHHhhh
Q 021791          265 TLYRGLIQSDMLRTWRRLKKKLDE  288 (307)
Q Consensus       265 ~l~~~~~~~g~~~~a~~~~~~~~~  288 (307)
                      .+.++|...|..++|.+.+++...
T Consensus       454 ~~a~c~~~l~e~e~A~e~y~kvl~  477 (895)
T KOG2076|consen  454 KLARCYMELGEYEEAIEFYEKVLI  477 (895)
T ss_pred             HHHHHHHHHhhHHHHHHHHHHHHh
Confidence            777777777777777777777643

>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]

Probab=99.39  E-value=2.5e-10  Score=98.01  Aligned_cols=276  Identities=12%  Similarity=0.077  Sum_probs=204.4

Q ss_pred             HHHHHHHHHHHHhcCchhhHHHHHHHHHhc---CCCCcHH-----HHHHHHHHHHhhCCCCcchhhHHHHHHHHHHHHHH
Q 021791            4 VKMYTSLIYGWCKINRIDMAERFLGEMIER---GVEPNVV-----TYNVLLNGVCRRASLHPNERFEKTIRNAEKVFDEM   75 (307)
Q Consensus         4 ~~~~~~li~~~~~~g~~~~a~~~~~~~~~~---~~~p~~~-----~~~~ll~~~~~~~~~~~~~~~~~~~~~a~~~~~~~   75 (307)
                      +...|.+.......|++.+|...|......   ...++..     |....+..+...         .++.+.|.+.|..+
T Consensus       452 ~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E~---------l~~~~~A~e~Yk~I  522 (1018)
T KOG2002|consen  452 PEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARLLEE---------LHDTEVAEEMYKSI  522 (1018)
T ss_pred             HHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHHHHh---------hhhhhHHHHHHHHH
Confidence            456788888888999999999999988765   2233331     222222233332         67888999999999


Q ss_pred             HhcCCCCCHHHHHHHHHHHHhcCCchhHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCChHHHHHHHHHHHhCCC-CCCH
Q 021791           76 RVRGIEPDVTSFSIVLHVYSRAHKPQLSLDKLNFMKEKGICPTVATYTSVVKCLCSCGRIEDAEELLGEMVRNGV-SPSA  154 (307)
Q Consensus        76 ~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~-~~~~  154 (307)
                      .+.. +-=+..|.-++......+...+|...+....+..- .++..++.+...+.+...+..|..-|..+.+.-. .+|+
T Consensus       523 lkeh-p~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d~-~np~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~  600 (1018)
T KOG2002|consen  523 LKEH-PGYIDAYLRLGCMARDKNNLYEASLLLKDALNIDS-SNPNARSLLGNLHLKKSEWKPAKKKFETILKKTSTKTDA  600 (1018)
T ss_pred             HHHC-chhHHHHHHhhHHHHhccCcHHHHHHHHHHHhccc-CCcHHHHHHHHHHHhhhhhcccccHHHHHHhhhccCCch
Confidence            8772 22344455555444456778889999988877643 3677777788899999999988887776665422 2455


Q ss_pred             hhHHHHHHHHhc------------CCChhHHHHHHHHHhhcCCCCccHHHHHHHHHHHHhcCcHHHHHHHHHHHhhCCCC
Q 021791          155 ETYNCFFKEYRG------------RKDANGAMKLYRQMKEDDLCVPNIHTYNILIGMFMALNRMDMVREIWNHVKGSELG  222 (307)
Q Consensus       155 ~~~~~l~~~~~~------------~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~  222 (307)
                      .+.-.|.+.|..            .+..++|+++|.+..+..  +-|...-+-+.-.++..|++..|..+|..+.+... 
T Consensus       601 YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~~d--pkN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~~-  677 (1018)
T KOG2002|consen  601 YSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLRND--PKNMYAANGIGIVLAEKGRFSEARDIFSQVREATS-  677 (1018)
T ss_pred             hHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHhcC--cchhhhccchhhhhhhccCchHHHHHHHHHHHHHh-
Confidence            555555555532            245678999999998886  77888888899999999999999999999998743 


Q ss_pred             CCHHhHHHHHHHHHccCcHHHHHHHHHHHHHc-CCCCcHhhHHHHHHHHhhchhHHHHHHHHHHhhhcCCCC
Q 021791          223 LDLDSYTMLIHGLCEKQKWKEACQYFVEMIEK-GLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDEESITF  293 (307)
Q Consensus       223 ~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~-~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~  293 (307)
                      -...+|-.+..+|...|+|..|+++|+...+. .-.-+......|.+++.+.|.+.+|.+.+.........-
T Consensus       678 ~~~dv~lNlah~~~e~~qy~~AIqmYe~~lkkf~~~~~~~vl~~Lara~y~~~~~~eak~~ll~a~~~~p~~  749 (1018)
T KOG2002|consen  678 DFEDVWLNLAHCYVEQGQYRLAIQMYENCLKKFYKKNRSEVLHYLARAWYEAGKLQEAKEALLKARHLAPSN  749 (1018)
T ss_pred             hCCceeeeHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCcc
Confidence            25678899999999999999999999988776 334567788999999999999999999887766554433

>KOG1840 consensus Kinesin light chain [Cytoskeleton]

Probab=99.34  E-value=1.8e-09  Score=89.53  Aligned_cols=239  Identities=18%  Similarity=0.144  Sum_probs=175.3

Q ss_pred             HHHHHHHHHHHHhhCCCCcchhhHHHHHHHHHHHHHHHhc-----C-CCCCHHH-HHHHHHHHHhcCCchhHHHHHHHHH
Q 021791           39 VVTYNVLLNGVCRRASLHPNERFEKTIRNAEKVFDEMRVR-----G-IEPDVTS-FSIVLHVYSRAHKPQLSLDKLNFMK  111 (307)
Q Consensus        39 ~~~~~~ll~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~-----~-~~~~~~~-~~~ll~~~~~~~~~~~a~~~~~~~~  111 (307)
                      ..+...+...|..          .|+++.|+.+++...+.     | ..|...+ .+.+...|...+++++|..+|+++.
T Consensus       199 ~~~~~~La~~y~~----------~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL  268 (508)
T KOG1840|consen  199 LRTLRNLAEMYAV----------QGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEAL  268 (508)
T ss_pred             HHHHHHHHHHHHH----------hccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence            4466667788888          88889999998887654     2 1334433 3447778999999999999999986


Q ss_pred             Hc-----CC--CCchhhHHHHHHHHHhcCChHHHHHHHHHHHhC-----CCC-CCH-hhHHHHHHHHhcCCChhHHHHHH
Q 021791          112 EK-----GI--CPTVATYTSVVKCLCSCGRIEDAEELLGEMVRN-----GVS-PSA-ETYNCFFKEYRGRKDANGAMKLY  177 (307)
Q Consensus       112 ~~-----~~--~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-----~~~-~~~-~~~~~l~~~~~~~~~~~~a~~~~  177 (307)
                      ..     |-  +--..+++.|..+|.+.|++++|...+++..+.     +.. |.. ..++.+...+...+++++|..++
T Consensus       269 ~i~e~~~G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~  348 (508)
T KOG1840|consen  269 TIREEVFGEDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLL  348 (508)
T ss_pred             HHHHHhcCCCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHH
Confidence            53     21  123456778888999999999998888876542     111 222 24566777899999999999998


Q ss_pred             HHHhhcCC--CCc----cHHHHHHHHHHHHhcCcHHHHHHHHHHHhhC----CC--CC-CHHhHHHHHHHHHccCcHHHH
Q 021791          178 RQMKEDDL--CVP----NIHTYNILIGMFMALNRMDMVREIWNHVKGS----EL--GL-DLDSYTMLIHGLCEKQKWKEA  244 (307)
Q Consensus       178 ~~~~~~~~--~~~----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~--~~-~~~~~~~li~~~~~~g~~~~a  244 (307)
                      ....+.-.  +.+    -..+++.|...|...|++++|+++++.+...    +.  .+ ....++.+...|.+.+++.+|
T Consensus       349 q~al~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a  428 (508)
T KOG1840|consen  349 QKALKIYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEA  428 (508)
T ss_pred             HHHHHHHHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchH
Confidence            87644211  122    2467899999999999999999999987753    11  11 244678899999999999999


Q ss_pred             HHHHHHHHHc----CC-CCc-HhhHHHHHHHHhhchhHHHHHHHHHHhh
Q 021791          245 CQYFVEMIEK----GL-LPQ-KVTFETLYRGLIQSDMLRTWRRLKKKLD  287 (307)
Q Consensus       245 ~~~~~~~~~~----~~-~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~  287 (307)
                      ..+|.+...-    |. .|+ ..+|..|...|...|+++.|.++.+...
T Consensus       429 ~~l~~~~~~i~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~  477 (508)
T KOG1840|consen  429 EQLFEEAKDIMKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVL  477 (508)
T ss_pred             HHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence            9998876432    22 223 2478999999999999999999988764

>KOG1840 consensus Kinesin light chain [Cytoskeleton]

Probab=99.33  E-value=1.9e-09  Score=89.45  Aligned_cols=238  Identities=15%  Similarity=0.131  Sum_probs=172.4

Q ss_pred             HHHHHHHHHHhcCchhhHHHHHHHHHhc-----CC-CCcHHH-HHHHHHHHHhhCCCCcchhhHHHHHHHHHHHHHHHhc
Q 021791            6 MYTSLIYGWCKINRIDMAERFLGEMIER-----GV-EPNVVT-YNVLLNGVCRRASLHPNERFEKTIRNAEKVFDEMRVR   78 (307)
Q Consensus         6 ~~~~li~~~~~~g~~~~a~~~~~~~~~~-----~~-~p~~~~-~~~ll~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~   78 (307)
                      +...+...|...|+++.|+.++.+..+.     |. .|...+ .+.+-..|..          .+++.+|..+|+++...
T Consensus       201 ~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~----------~~k~~eAv~ly~~AL~i  270 (508)
T KOG1840|consen  201 TLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRS----------LGKYDEAVNLYEEALTI  270 (508)
T ss_pred             HHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHH----------hccHHHHHHHHHHHHHH
Confidence            4455899999999999999999988654     21 233332 3334555666          77788888888877553


Q ss_pred             -----C--CCCCHHHHHHHHHHHHhcCCchhHHHHHHHHHHc-----CC-CCc-hhhHHHHHHHHHhcCChHHHHHHHHH
Q 021791           79 -----G--IEPDVTSFSIVLHVYSRAHKPQLSLDKLNFMKEK-----GI-CPT-VATYTSVVKCLCSCGRIEDAEELLGE  144 (307)
Q Consensus        79 -----~--~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-----~~-~~~-~~~~~~ll~~~~~~~~~~~a~~~~~~  144 (307)
                           |  .+--..+++.|...|.+.|++++|...++...+.     |. .|. ...++.+...+...+++++|..+++.
T Consensus       271 ~e~~~G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~  350 (508)
T KOG1840|consen  271 REEVFGEDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQK  350 (508)
T ss_pred             HHHhcCCCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHH
Confidence                 2  1223457888888999999999998888776432     22 122 23466777888999999999999987


Q ss_pred             HHhC---CCCCC----HhhHHHHHHHHhcCCChhHHHHHHHHHhhcC----C--CCccHHHHHHHHHHHHhcCcHHHHHH
Q 021791          145 MVRN---GVSPS----AETYNCFFKEYRGRKDANGAMKLYRQMKEDD----L--CVPNIHTYNILIGMFMALNRMDMVRE  211 (307)
Q Consensus       145 ~~~~---~~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~----~--~~~~~~~~~~l~~~~~~~~~~~~a~~  211 (307)
                      ..+.   -+.++    ..+++.|...|...|++++|.+++++.....    .  ..-.-..++.|...|.+.++..+|.+
T Consensus       351 al~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~  430 (508)
T KOG1840|consen  351 ALKIYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQ  430 (508)
T ss_pred             HHHHHHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHH
Confidence            6542   11222    4588999999999999999999999886532    1  02224567888999999999999999


Q ss_pred             HHHHHhh----CCC-CC-CHHhHHHHHHHHHccCcHHHHHHHHHHHHH
Q 021791          212 IWNHVKG----SEL-GL-DLDSYTMLIHGLCEKQKWKEACQYFVEMIE  253 (307)
Q Consensus       212 ~~~~~~~----~~~-~~-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~  253 (307)
                      +|.+...    .|. .| ...+|..|...|...|+++.|.++.+...+
T Consensus       431 l~~~~~~i~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~~  478 (508)
T KOG1840|consen  431 LFEEAKDIMKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVLN  478 (508)
T ss_pred             HHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHHH
Confidence            9877543    221 12 345799999999999999999999888763

>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.33  E-value=3.3e-09  Score=84.92  Aligned_cols=151  Identities=9%  Similarity=0.045  Sum_probs=82.6

Q ss_pred             cCCchhHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHhcCCChhHHHHH
Q 021791           97 AHKPQLSLDKLNFMKEKGICPTVATYTSVVKCLCSCGRIEDAEELLGEMVRNGVSPSAETYNCFFKEYRGRKDANGAMKL  176 (307)
Q Consensus        97 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~  176 (307)
                      .|+.-.+..-|+..+.....++ ..|-.+..+|...++.++....|+...+.+.. ++.+|..-.+.+.-.+++++|..=
T Consensus       339 ~g~~~~a~~d~~~~I~l~~~~~-~lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~-n~dvYyHRgQm~flL~q~e~A~aD  416 (606)
T KOG0547|consen  339 KGDSLGAQEDFDAAIKLDPAFN-SLYIKRAAAYADENQSEKMWKDFNKAEDLDPE-NPDVYYHRGQMRFLLQQYEEAIAD  416 (606)
T ss_pred             cCCchhhhhhHHHHHhcCcccc-hHHHHHHHHHhhhhccHHHHHHHHHHHhcCCC-CCchhHhHHHHHHHHHHHHHHHHH
Confidence            4666677777777766543322 22555666666666666666666666665443 445555555555555555555555


Q ss_pred             HHHHhhcCCCCccHHHHHHHHHHHHhcCcHHHHHHHHHHHhhCCCCCCHHhHHHHHHHHHccCcHHHHHHHHHHHH
Q 021791          177 YRQMKEDDLCVPNIHTYNILIGMFMALNRMDMVREIWNHVKGSELGLDLDSYTMLIHGLCEKQKWKEACQYFVEMI  252 (307)
Q Consensus       177 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~  252 (307)
                      |++.....  +-+...|-.+..+..+.++++++...|++.+.+ ++-.+..|+...+.+..+++++.|.+.|+..+
T Consensus       417 F~Kai~L~--pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkk-FP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai  489 (606)
T KOG0547|consen  417 FQKAISLD--PENAYAYIQLCCALYRQHKIAESMKTFEEAKKK-FPNCPEVYNLFAEILTDQQQFDKAVKQYDKAI  489 (606)
T ss_pred             HHHHhhcC--hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCCchHHHHHHHHHhhHHhHHHHHHHHHHHH
Confidence            55555443  334444444444445555555555555555544 22244455555555555555555555555444

>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]

Probab=99.32  E-value=2e-08  Score=86.10  Aligned_cols=272  Identities=11%  Similarity=0.040  Sum_probs=192.5

Q ss_pred             cHHHHHHHHHHHHhcCchhhHHHHHHHHHhcCCCCcHHHHHHHHHHHHhhCCCCcchhhHHHHHHHHHHHHHHHhcCCCC
Q 021791            3 NVKMYTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPNERFEKTIRNAEKVFDEMRVRGIEP   82 (307)
Q Consensus         3 ~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~   82 (307)
                      +...|.+|...|-+.|+.+++...+--.-.. .+-|...|..+-.-..+          .|.+.+|.-.|.+.++.. ++
T Consensus       172 ~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL-~p~d~e~W~~ladls~~----------~~~i~qA~~cy~rAI~~~-p~  239 (895)
T KOG2076|consen  172 NPIAYYTLGEIYEQRGDIEKALNFWLLAAHL-NPKDYELWKRLADLSEQ----------LGNINQARYCYSRAIQAN-PS  239 (895)
T ss_pred             chhhHHHHHHHHHHcccHHHHHHHHHHHHhc-CCCChHHHHHHHHHHHh----------cccHHHHHHHHHHHHhcC-Cc
Confidence            4567889999999999999988877554433 23356778777777676          777888888888887763 44


Q ss_pred             CHHHHHHHHHHHHhcCCchhHHHHHHHHHHcCCCCchhhHH----HHHHHHHhcCChHHHHHHHHHHHhC-CCCCCHhhH
Q 021791           83 DVTSFSIVLHVYSRAHKPQLSLDKLNFMKEKGICPTVATYT----SVVKCLCSCGRIEDAEELLGEMVRN-GVSPSAETY  157 (307)
Q Consensus        83 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~----~ll~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~  157 (307)
                      +....-.-...|-+.|+...|...|.++.+...+.|..-+.    ..++.+...++.+.|.+.++..... +-..+...+
T Consensus       240 n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~le~~~s~~~~~~~~ed~  319 (895)
T KOG2076|consen  240 NWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAKALEGALSKEKDEASLEDL  319 (895)
T ss_pred             chHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhccccccccHH
Confidence            55555556667777888888888888877764332322222    2344455666667777777666542 223344556


Q ss_pred             HHHHHHHhcCCChhHHHHHHHHHhh-------------------------------------------------------
Q 021791          158 NCFFKEYRGRKDANGAMKLYRQMKE-------------------------------------------------------  182 (307)
Q Consensus       158 ~~l~~~~~~~~~~~~a~~~~~~~~~-------------------------------------------------------  182 (307)
                      +.++..+.+...++.+.........                                                       
T Consensus       320 ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v~rl~icL~~L~~~e~~e~l  399 (895)
T KOG2076|consen  320 NILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRVIRLMICLVHLKERELLEAL  399 (895)
T ss_pred             HHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchhHhHhhhhhcccccchHHHH
Confidence            6666666666666666655554433                                                       


Q ss_pred             ------cCC-CCccHHHHHHHHHHHHhcCcHHHHHHHHHHHhhCCCCCCHHhHHHHHHHHHccCcHHHHHHHHHHHHHcC
Q 021791          183 ------DDL-CVPNIHTYNILIGMFMALNRMDMVREIWNHVKGSELGLDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKG  255 (307)
Q Consensus       183 ------~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~  255 (307)
                            .+. +..+...|..+..++...|++.+|..++..+......-+...|-.+.++|...|.+++|.+.|+..+.. 
T Consensus       400 l~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l~e~e~A~e~y~kvl~~-  478 (895)
T KOG2076|consen  400 LHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYMELGEYEEAIEFYEKVLIL-  478 (895)
T ss_pred             HHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHHHHhhHHHHHHHHHHHHhc-
Confidence                  110 122345567788899999999999999999998755557778999999999999999999999999976 


Q ss_pred             CCCcHhhHHHHHHHHhhchhHHHHHHHHHHhh
Q 021791          256 LLPQKVTFETLYRGLIQSDMLRTWRRLKKKLD  287 (307)
Q Consensus       256 ~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~  287 (307)
                      -+.+...-..|...+.+.|+.++|.+.+..+.
T Consensus       479 ~p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~  510 (895)
T KOG2076|consen  479 APDNLDARITLASLYQQLGNHEKALETLEQII  510 (895)
T ss_pred             CCCchhhhhhHHHHHHhcCCHHHHHHHHhccc
Confidence            23344556667778899999999999998875

>PRK11189 lipoprotein NlpI; Provisional

Probab=99.32  E-value=3.8e-09  Score=83.58  Aligned_cols=220  Identities=9%  Similarity=-0.068  Sum_probs=152.1

Q ss_pred             HHHHHHHHHHHHHHHhcC-CCCC--HHHHHHHHHHHHhcCCchhHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCChHHH
Q 021791           62 EKTIRNAEKVFDEMRVRG-IEPD--VTSFSIVLHVYSRAHKPQLSLDKLNFMKEKGICPTVATYTSVVKCLCSCGRIEDA  138 (307)
Q Consensus        62 ~~~~~~a~~~~~~~~~~~-~~~~--~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a  138 (307)
                      ....+.++.-+.++.... ..|+  ...|..+...+...|+.++|...|++..+.... +...|+.+...+...|++++|
T Consensus        39 ~~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~-~~~a~~~lg~~~~~~g~~~~A  117 (296)
T PRK11189         39 TLQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALRPD-MADAYNYLGIYLTQAGNFDAA  117 (296)
T ss_pred             chHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHCCCHHHH
Confidence            345566777777777542 2222  456778888899999999999999999887543 678899999999999999999


Q ss_pred             HHHHHHHHhCCCCCCHhhHHHHHHHHhcCCChhHHHHHHHHHhhcCCCCccHHHHHHHHHHHHhcCcHHHHHHHHHHHhh
Q 021791          139 EELLGEMVRNGVSPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDDLCVPNIHTYNILIGMFMALNRMDMVREIWNHVKG  218 (307)
Q Consensus       139 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~  218 (307)
                      ...|++..+.... +..++..+..++...|++++|.+.++...+..  +.+. ........+...++.++|...+.....
T Consensus       118 ~~~~~~Al~l~P~-~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~--P~~~-~~~~~~~l~~~~~~~~~A~~~l~~~~~  193 (296)
T PRK11189        118 YEAFDSVLELDPT-YNYAYLNRGIALYYGGRYELAQDDLLAFYQDD--PNDP-YRALWLYLAESKLDPKQAKENLKQRYE  193 (296)
T ss_pred             HHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCCH-HHHHHHHHHHccCCHHHHHHHHHHHHh
Confidence            9999999886543 56777888888889999999999999998874  2332 112222234456789999999976554


Q ss_pred             CCCCCCHHhHHHHHHHHHccCcHHHHHHHHHHHHHc---CC--CC-cHhhHHHHHHHHhhchhHHHHHHHHHHhhhcCC
Q 021791          219 SELGLDLDSYTMLIHGLCEKQKWKEACQYFVEMIEK---GL--LP-QKVTFETLYRGLIQSDMLRTWRRLKKKLDEESI  291 (307)
Q Consensus       219 ~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~---~~--~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~  291 (307)
                      .. .|+...+ .+...  ..|+..++ ..+..+.+.   ..  .| ....|..+...+.+.|+.++|...|++..+.++
T Consensus       194 ~~-~~~~~~~-~~~~~--~lg~~~~~-~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~~  267 (296)
T PRK11189        194 KL-DKEQWGW-NIVEF--YLGKISEE-TLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANNV  267 (296)
T ss_pred             hC-CccccHH-HHHHH--HccCCCHH-HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC
Confidence            32 2232222 22222  34444433 344444432   11  11 235688888899999999999999999877664

>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.31  E-value=5.9e-09  Score=84.88  Aligned_cols=264  Identities=9%  Similarity=-0.051  Sum_probs=153.6

Q ss_pred             HHHHHHHHHHhcCchhhHHHHHHHHHhcCCCCcHHHHHHHHHHHHhhCCCCcchhhHHHHHHHHHHHHHHHhcCCCCCHH
Q 021791            6 MYTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPNERFEKTIRNAEKVFDEMRVRGIEPDVT   85 (307)
Q Consensus         6 ~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~   85 (307)
                      ....-.+-+...+++++..++++...+. .+++...+..-|.++...|+          -.+-..+=.++.+. .+-.+.
T Consensus       246 ll~~~ad~~y~~c~f~~c~kit~~lle~-dpfh~~~~~~~ia~l~el~~----------~n~Lf~lsh~LV~~-yP~~a~  313 (611)
T KOG1173|consen  246 LLAEKADRLYYGCRFKECLKITEELLEK-DPFHLPCLPLHIACLYELGK----------SNKLFLLSHKLVDL-YPSKAL  313 (611)
T ss_pred             HHHHHHHHHHHcChHHHHHHHhHHHHhh-CCCCcchHHHHHHHHHHhcc----------cchHHHHHHHHHHh-CCCCCc
Confidence            3334455667788999999999988776 45666777777777777433          33333333444444 344566


Q ss_pred             HHHHHHHHHHhcCCchhHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHh
Q 021791           86 SFSIVLHVYSRAHKPQLSLDKLNFMKEKGICPTVATYTSVVKCLCSCGRIEDAEELLGEMVRNGVSPSAETYNCFFKEYR  165 (307)
Q Consensus        86 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~  165 (307)
                      +|-++.-.|.-.|+..+|.+.|.+....+.. =...|-.....|+-.|..++|...+...-+.= +-....+--+..-|.
T Consensus       314 sW~aVg~YYl~i~k~seARry~SKat~lD~~-fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~-~G~hlP~LYlgmey~  391 (611)
T KOG1173|consen  314 SWFAVGCYYLMIGKYSEARRYFSKATTLDPT-FGPAWLAFGHSFAGEGEHDQAMAAYFTAARLM-PGCHLPSLYLGMEYM  391 (611)
T ss_pred             chhhHHHHHHHhcCcHHHHHHHHHHhhcCcc-ccHHHHHHhHHhhhcchHHHHHHHHHHHHHhc-cCCcchHHHHHHHHH
Confidence            7777777777777788888887776554322 23456666677777777777776666554421 111111222333455


Q ss_pred             cCCChhHHHHHHHHHhhcCCCCccHHHHHHHHHHHHhcCcHHHHHHHHHHHhhC--CCC----CCHHhHHHHHHHHHccC
Q 021791          166 GRKDANGAMKLYRQMKEDDLCVPNIHTYNILIGMFMALNRMDMVREIWNHVKGS--ELG----LDLDSYTMLIHGLCEKQ  239 (307)
Q Consensus       166 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~----~~~~~~~~li~~~~~~g  239 (307)
                      +.++.+.|.++|.+.....  |.|+...+-+.-..-..+.+.+|...|+.....  ...    --..+++.|..+|.+.+
T Consensus       392 ~t~n~kLAe~Ff~~A~ai~--P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~  469 (611)
T KOG1173|consen  392 RTNNLKLAEKFFKQALAIA--PSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLN  469 (611)
T ss_pred             HhccHHHHHHHHHHHHhcC--CCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHh
Confidence            5666666666666665543  455555555555555556666666666554411  000    12234555566666666


Q ss_pred             cHHHHHHHHHHHHHcCCCCcHhhHHHHHHHHhhchhHHHHHHHHHHh
Q 021791          240 KWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKL  286 (307)
Q Consensus       240 ~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~  286 (307)
                      .+++|+..+++.+.. .+-|..++.++.-.|...|+++.|.+.|.+.
T Consensus       470 ~~~eAI~~~q~aL~l-~~k~~~~~asig~iy~llgnld~Aid~fhKa  515 (611)
T KOG1173|consen  470 KYEEAIDYYQKALLL-SPKDASTHASIGYIYHLLGNLDKAIDHFHKA  515 (611)
T ss_pred             hHHHHHHHHHHHHHc-CCCchhHHHHHHHHHHHhcChHHHHHHHHHH
Confidence            666666666666554 2345555666666666666666666665553

>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala

Probab=99.30  E-value=1.2e-08  Score=85.52  Aligned_cols=165  Identities=12%  Similarity=0.054  Sum_probs=115.3

Q ss_pred             hHHHHHHHHHhcCChHHHHHHHHHHHhC----C----------CCCCH--hhHHHHHHHHhcCCChhHHHHHHHHHhhcC
Q 021791          121 TYTSVVKCLCSCGRIEDAEELLGEMVRN----G----------VSPSA--ETYNCFFKEYRGRKDANGAMKLYRQMKEDD  184 (307)
Q Consensus       121 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~----~----------~~~~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~  184 (307)
                      +|+.+-..|......+-..+++......    +          -.|+.  .++..+.+.|...|++++|+.++++.....
T Consensus       145 lF~~lk~Ly~d~~K~~~i~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~ht  224 (517)
T PF12569_consen  145 LFSNLKPLYKDPEKAAIIESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEHT  224 (517)
T ss_pred             HHHHHHHHHcChhHHHHHHHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcC
Confidence            4555555555444455555555555432    1          12333  244666777888999999999999888874


Q ss_pred             CCCccHHHHHHHHHHHHhcCcHHHHHHHHHHHhhCCCCCCHHhHHHHHHHHHccCcHHHHHHHHHHHHHcCCCCcHhhH-
Q 021791          185 LCVPNIHTYNILIGMFMALNRMDMVREIWNHVKGSELGLDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTF-  263 (307)
Q Consensus       185 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~-  263 (307)
                        |..+..|..-...+-..|++++|.+.++..+..... |...-+..+..+.++|+.++|.+++......+..|-...+ 
T Consensus       225 --Pt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD~~-DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~  301 (517)
T PF12569_consen  225 --PTLVELYMTKARILKHAGDLKEAAEAMDEARELDLA-DRYINSKCAKYLLRAGRIEEAEKTASLFTREDVDPLSNLND  301 (517)
T ss_pred             --CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCChh-hHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCcccCHHH
Confidence              344778888888899999999999999999887644 6666677788888999999999999988777654433221 


Q ss_pred             -------HHHHHHHhhchhHHHHHHHHHHhhh
Q 021791          264 -------ETLYRGLIQSDMLRTWRRLKKKLDE  288 (307)
Q Consensus       264 -------~~l~~~~~~~g~~~~a~~~~~~~~~  288 (307)
                             .....+|.+.|++..|..-+..+.+
T Consensus       302 mQc~Wf~~e~a~a~~r~~~~~~ALk~~~~v~k  333 (517)
T PF12569_consen  302 MQCMWFETECAEAYLRQGDYGLALKRFHAVLK  333 (517)
T ss_pred             HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence                   3345678888888777776665543

N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].

>PRK11189 lipoprotein NlpI; Provisional

Probab=99.29  E-value=1.2e-08  Score=80.75  Aligned_cols=227  Identities=11%  Similarity=0.009  Sum_probs=157.4

Q ss_pred             CchhhHHHHHHHHHhcC-CCCc--HHHHHHHHHHHHhhCCCCcchhhHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHH
Q 021791           18 NRIDMAERFLGEMIERG-VEPN--VVTYNVLLNGVCRRASLHPNERFEKTIRNAEKVFDEMRVRGIEPDVTSFSIVLHVY   94 (307)
Q Consensus        18 g~~~~a~~~~~~~~~~~-~~p~--~~~~~~ll~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~   94 (307)
                      +..+.++.-+.+++... ..|+  ...|..+-..+..          .|+.++|...|++..+.. +.+...|+.+...+
T Consensus        40 ~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~----------~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~~  108 (296)
T PRK11189         40 LQQEVILARLNQILASRDLTDEERAQLHYERGVLYDS----------LGLRALARNDFSQALALR-PDMADAYNYLGIYL  108 (296)
T ss_pred             hHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHH----------CCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHH
Confidence            34456777777777542 2232  3456666666777          788899999999998874 44688999999999


Q ss_pred             HhcCCchhHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHhcCCChhHHH
Q 021791           95 SRAHKPQLSLDKLNFMKEKGICPTVATYTSVVKCLCSCGRIEDAEELLGEMVRNGVSPSAETYNCFFKEYRGRKDANGAM  174 (307)
Q Consensus        95 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~  174 (307)
                      ...|++++|...|+...+.... +..++..+...+...|++++|.+.|+...+..+  +..............+++++|.
T Consensus       109 ~~~g~~~~A~~~~~~Al~l~P~-~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~P--~~~~~~~~~~l~~~~~~~~~A~  185 (296)
T PRK11189        109 TQAGNFDAAYEAFDSVLELDPT-YNYAYLNRGIALYYGGRYELAQDDLLAFYQDDP--NDPYRALWLYLAESKLDPKQAK  185 (296)
T ss_pred             HHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC--CCHHHHHHHHHHHccCCHHHHH
Confidence            9999999999999999987543 567888899999999999999999999988643  3222222233345678899999


Q ss_pred             HHHHHHhhcCCCCccHHHHHHHHHHHHhcCcHHHHHHHHHHHhhC---CC--C-CCHHhHHHHHHHHHccCcHHHHHHHH
Q 021791          175 KLYRQMKEDDLCVPNIHTYNILIGMFMALNRMDMVREIWNHVKGS---EL--G-LDLDSYTMLIHGLCEKQKWKEACQYF  248 (307)
Q Consensus       175 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~--~-~~~~~~~~li~~~~~~g~~~~a~~~~  248 (307)
                      ..+.+.....  .|+...+ .+..  ...|+...+ +.+..+.+.   ..  . .....|..+...+...|++++|...|
T Consensus       186 ~~l~~~~~~~--~~~~~~~-~~~~--~~lg~~~~~-~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~  259 (296)
T PRK11189        186 ENLKQRYEKL--DKEQWGW-NIVE--FYLGKISEE-TLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALF  259 (296)
T ss_pred             HHHHHHHhhC--CccccHH-HHHH--HHccCCCHH-HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHH
Confidence            9997765432  2332222 2222  335555443 344444321   11  1 12357889999999999999999999


Q ss_pred             HHHHHcCCCCcHhhHHH
Q 021791          249 VEMIEKGLLPQKVTFET  265 (307)
Q Consensus       249 ~~~~~~~~~p~~~~~~~  265 (307)
                      ++.++.+ +||..-+..
T Consensus       260 ~~Al~~~-~~~~~e~~~  275 (296)
T PRK11189        260 KLALANN-VYNFVEHRY  275 (296)
T ss_pred             HHHHHhC-CchHHHHHH
Confidence            9999764 345444443

>KOG2003 consensus TPR repeat-containing protein [General function prediction only]

Probab=99.27  E-value=5e-09  Score=83.37  Aligned_cols=220  Identities=10%  Similarity=0.035  Sum_probs=169.6

Q ss_pred             HHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCchhHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCChHHHHHH
Q 021791           62 EKTIRNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHKPQLSLDKLNFMKEKGICPTVATYTSVVKCLCSCGRIEDAEEL  141 (307)
Q Consensus        62 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~  141 (307)
                      .+++.+|.+.-+...... .-+......-.......|++++|.+.|++....... .......+.-.+-..|++++|++.
T Consensus       469 gk~~~~aqqyad~aln~d-ryn~~a~~nkgn~~f~ngd~dka~~~ykeal~ndas-c~ealfniglt~e~~~~ldeald~  546 (840)
T KOG2003|consen  469 GKDFADAQQYADIALNID-RYNAAALTNKGNIAFANGDLDKAAEFYKEALNNDAS-CTEALFNIGLTAEALGNLDEALDC  546 (840)
T ss_pred             ccchhHHHHHHHHHhccc-ccCHHHhhcCCceeeecCcHHHHHHHHHHHHcCchH-HHHHHHHhcccHHHhcCHHHHHHH
Confidence            456777777766655332 112223323333455689999999999999887543 233333344557789999999999


Q ss_pred             HHHHHhCCCCCCHhhHHHHHHHHhcCCChhHHHHHHHHHhhcCCCCccHHHHHHHHHHHHhcCcHHHHHHHHHHHhhCCC
Q 021791          142 LGEMVRNGVSPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDDLCVPNIHTYNILIGMFMALNRMDMVREIWNHVKGSEL  221 (307)
Q Consensus       142 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~  221 (307)
                      |-++... +..+..+...+...|....++..|++++.+....  ++.|+..++-|...|-+.|+-.+|.+..-.--.. +
T Consensus       547 f~klh~i-l~nn~evl~qianiye~led~aqaie~~~q~~sl--ip~dp~ilskl~dlydqegdksqafq~~ydsyry-f  622 (840)
T KOG2003|consen  547 FLKLHAI-LLNNAEVLVQIANIYELLEDPAQAIELLMQANSL--IPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRY-F  622 (840)
T ss_pred             HHHHHHH-HHhhHHHHHHHHHHHHHhhCHHHHHHHHHHhccc--CCCCHHHHHHHHHHhhcccchhhhhhhhhhcccc-c
Confidence            9887654 2337778888999999999999999999887655  3778999999999999999999999887665544 4


Q ss_pred             CCCHHhHHHHHHHHHccCcHHHHHHHHHHHHHcCCCCcHhhHHHHHHHH-hhchhHHHHHHHHHHhhhc
Q 021791          222 GLDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGL-IQSDMLRTWRRLKKKLDEE  289 (307)
Q Consensus       222 ~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~-~~~g~~~~a~~~~~~~~~~  289 (307)
                      +-+..+...|...|....-+++++.+|++..  -+.|+..-|..++..| .++|++++|.++++.+...
T Consensus       623 p~nie~iewl~ayyidtqf~ekai~y~ekaa--liqp~~~kwqlmiasc~rrsgnyqka~d~yk~~hrk  689 (840)
T KOG2003|consen  623 PCNIETIEWLAAYYIDTQFSEKAINYFEKAA--LIQPNQSKWQLMIASCFRRSGNYQKAFDLYKDIHRK  689 (840)
T ss_pred             CcchHHHHHHHHHHHhhHHHHHHHHHHHHHH--hcCccHHHHHHHHHHHHHhcccHHHHHHHHHHHHHh
Confidence            5588899999999999999999999999876  4689999999888765 6789999999999988543

>KOG0495 consensus HAT repeat protein [RNA processing and modification]

Probab=99.27  E-value=6.9e-08  Score=80.32  Aligned_cols=264  Identities=11%  Similarity=-0.024  Sum_probs=205.7

Q ss_pred             HHHHHHHHHHHhcCchhhHHHHHHHHHhcCCCCcHHHHHHHHHHHHhhCCCCcchhhHHHHHHHHHHHHHHHhcCCCCCH
Q 021791            5 KMYTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPNERFEKTIRNAEKVFDEMRVRGIEPDV   84 (307)
Q Consensus         5 ~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~   84 (307)
                      .+|+.-.+.|.+.+.++-|..+|...++- .+-+...|......--.          .|..++...+|++.... .+-..
T Consensus       517 ~tw~~da~~~~k~~~~~carAVya~alqv-fp~k~slWlra~~~ek~----------hgt~Esl~Allqkav~~-~pkae  584 (913)
T KOG0495|consen  517 STWLDDAQSCEKRPAIECARAVYAHALQV-FPCKKSLWLRAAMFEKS----------HGTRESLEALLQKAVEQ-CPKAE  584 (913)
T ss_pred             hHHhhhHHHHHhcchHHHHHHHHHHHHhh-ccchhHHHHHHHHHHHh----------cCcHHHHHHHHHHHHHh-CCcch
Confidence            46677777788888888888888888765 33355566665544333          77788888888888877 34466


Q ss_pred             HHHHHHHHHHHhcCCchhHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHH
Q 021791           85 TSFSIVLHVYSRAHKPQLSLDKLNFMKEKGICPTVATYTSVVKCLCSCGRIEDAEELLGEMVRNGVSPSAETYNCFFKEY  164 (307)
Q Consensus        85 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~  164 (307)
                      ..|....+.+...|+...|..++....+.... +...|..-+.....+.+++.|..+|.+....  .|+...|..-+...
T Consensus       585 ~lwlM~ake~w~agdv~~ar~il~~af~~~pn-seeiwlaavKle~en~e~eraR~llakar~~--sgTeRv~mKs~~~e  661 (913)
T KOG0495|consen  585 ILWLMYAKEKWKAGDVPAARVILDQAFEANPN-SEEIWLAAVKLEFENDELERARDLLAKARSI--SGTERVWMKSANLE  661 (913)
T ss_pred             hHHHHHHHHHHhcCCcHHHHHHHHHHHHhCCC-cHHHHHHHHHHhhccccHHHHHHHHHHHhcc--CCcchhhHHHhHHH
Confidence            67778888888899999999999999887654 7888888899999999999999999988764  56777887777777


Q ss_pred             hcCCChhHHHHHHHHHhhcCCCCccHHHHHHHHHHHHhcCcHHHHHHHHHHHhhCCCCCCHHhHHHHHHHHHccCcHHHH
Q 021791          165 RGRKDANGAMKLYRQMKEDDLCVPNIHTYNILIGMFMALNRMDMVREIWNHVKGSELGLDLDSYTMLIHGLCEKQKWKEA  244 (307)
Q Consensus       165 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a  244 (307)
                      .-.++.++|.+++++..+.-  +.-...|..+.+.+-+.++++.|.+.+..-.+. ++-.+..|-.+...=-+.|..-.|
T Consensus       662 r~ld~~eeA~rllEe~lk~f--p~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~-cP~~ipLWllLakleEk~~~~~rA  738 (913)
T KOG0495|consen  662 RYLDNVEEALRLLEEALKSF--PDFHKLWLMLGQIEEQMENIEMAREAYLQGTKK-CPNSIPLWLLLAKLEEKDGQLVRA  738 (913)
T ss_pred             HHhhhHHHHHHHHHHHHHhC--CchHHHHHHHhHHHHHHHHHHHHHHHHHhcccc-CCCCchHHHHHHHHHHHhcchhhH
Confidence            77889999999999888873  444667888888888999999999888776654 233556677777777778888999


Q ss_pred             HHHHHHHHHcCCCCcHhhHHHHHHHHhhchhHHHHHHHHHHhh
Q 021791          245 CQYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLD  287 (307)
Q Consensus       245 ~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~  287 (307)
                      ..++++..-++ +-+...|...|+.-.+.|+.+.|..+..+..
T Consensus       739 R~ildrarlkN-Pk~~~lwle~Ir~ElR~gn~~~a~~lmakAL  780 (913)
T KOG0495|consen  739 RSILDRARLKN-PKNALLWLESIRMELRAGNKEQAELLMAKAL  780 (913)
T ss_pred             HHHHHHHHhcC-CCcchhHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            99999887664 4466778888888899999988887765543

>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]

Probab=99.25  E-value=2.9e-08  Score=72.11  Aligned_cols=207  Identities=12%  Similarity=0.035  Sum_probs=173.8

Q ss_pred             HHHHHHHHHHhhCCCCcchhhHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCchhHHHHHHHHHHcCCCCchh
Q 021791           41 TYNVLLNGVCRRASLHPNERFEKTIRNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHKPQLSLDKLNFMKEKGICPTVA  120 (307)
Q Consensus        41 ~~~~ll~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~  120 (307)
                      +...|--.|..          .|+...|.+-+++.++.. +.+..+|..+...|.+.|+.+.|.+.|+...+.... +..
T Consensus        37 arlqLal~YL~----------~gd~~~A~~nlekAL~~D-Ps~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~-~Gd  104 (250)
T COG3063          37 ARLQLALGYLQ----------QGDYAQAKKNLEKALEHD-PSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPN-NGD  104 (250)
T ss_pred             HHHHHHHHHHH----------CCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCC-ccc
Confidence            44556667777          788899999999999884 346778999999999999999999999999988654 788


Q ss_pred             hHHHHHHHHHhcCChHHHHHHHHHHHhCCCCC-CHhhHHHHHHHHhcCCChhHHHHHHHHHhhcCCCCccHHHHHHHHHH
Q 021791          121 TYTSVVKCLCSCGRIEDAEELLGEMVRNGVSP-SAETYNCFFKEYRGRKDANGAMKLYRQMKEDDLCVPNIHTYNILIGM  199 (307)
Q Consensus       121 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~  199 (307)
                      +.|.....+|..|++++|...|++....-.-+ -..+|..+.-+..+.|+++.|...|++..+..  +....+...+.+.
T Consensus       105 VLNNYG~FLC~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~d--p~~~~~~l~~a~~  182 (250)
T COG3063         105 VLNNYGAFLCAQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELD--PQFPPALLELARL  182 (250)
T ss_pred             hhhhhhHHHHhCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhC--cCCChHHHHHHHH
Confidence            99999999999999999999999998752222 34688888888899999999999999999886  5667788889999


Q ss_pred             HHhcCcHHHHHHHHHHHhhCCCCCCHHhHHHHHHHHHccCcHHHHHHHHHHHHHcCCCCcHhhHH
Q 021791          200 FMALNRMDMVREIWNHVKGSELGLDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFE  264 (307)
Q Consensus       200 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~  264 (307)
                      ....|++-.|...++.....+. ++..+...-|+.--..|+.+.+-++=..+...  .|.+.-+.
T Consensus       183 ~~~~~~y~~Ar~~~~~~~~~~~-~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r~--fP~s~e~q  244 (250)
T COG3063         183 HYKAGDYAPARLYLERYQQRGG-AQAESLLLGIRIAKRLGDRAAAQRYQAQLQRL--FPYSEEYQ  244 (250)
T ss_pred             HHhcccchHHHHHHHHHHhccc-ccHHHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCCcHHHH
Confidence            9999999999999999998875 79998888888888999988888877776653  56555443

>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala

Probab=99.25  E-value=3.2e-08  Score=83.12  Aligned_cols=259  Identities=14%  Similarity=0.099  Sum_probs=181.0

Q ss_pred             HHHHHhcCchhhHHHHHHHHHhcCCCCcHH-HHHHHHHHHHhhCCCCcchhhHHHHHHHHHHHHHHHhcCCCCCHHH-HH
Q 021791           11 IYGWCKINRIDMAERFLGEMIERGVEPNVV-TYNVLLNGVCRRASLHPNERFEKTIRNAEKVFDEMRVRGIEPDVTS-FS   88 (307)
Q Consensus        11 i~~~~~~g~~~~a~~~~~~~~~~~~~p~~~-~~~~ll~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-~~   88 (307)
                      ...+...|++++|++.++.-...  -+|.. ........+.+          .|+.++|..+|..+++.+  |+... |.
T Consensus        11 ~~il~e~g~~~~AL~~L~~~~~~--I~Dk~~~~E~rA~ll~k----------Lg~~~eA~~~y~~Li~rN--Pdn~~Yy~   76 (517)
T PF12569_consen   11 NSILEEAGDYEEALEHLEKNEKQ--ILDKLAVLEKRAELLLK----------LGRKEEAEKIYRELIDRN--PDNYDYYR   76 (517)
T ss_pred             HHHHHHCCCHHHHHHHHHhhhhh--CCCHHHHHHHHHHHHHH----------cCCHHHHHHHHHHHHHHC--CCcHHHHH
Confidence            35567889999999999876554  44554 45555566667          888999999999999984  45555 44


Q ss_pred             HHHHHHHhc-----CCchhHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCChH-HHHHHHHHHHhCCCCCCHhhHHHHHH
Q 021791           89 IVLHVYSRA-----HKPQLSLDKLNFMKEKGICPTVATYTSVVKCLCSCGRIE-DAEELLGEMVRNGVSPSAETYNCFFK  162 (307)
Q Consensus        89 ~ll~~~~~~-----~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~-~a~~~~~~~~~~~~~~~~~~~~~l~~  162 (307)
                      .+..+....     .+.+...++|+++...-  |.......+.-.+.....+. .+...+..+...|++   .+|+.+-.
T Consensus        77 ~L~~~~g~~~~~~~~~~~~~~~~y~~l~~~y--p~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvP---slF~~lk~  151 (517)
T PF12569_consen   77 GLEEALGLQLQLSDEDVEKLLELYDELAEKY--PRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVP---SLFSNLKP  151 (517)
T ss_pred             HHHHHHhhhcccccccHHHHHHHHHHHHHhC--ccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCc---hHHHHHHH
Confidence            555554222     24677788888887653  34444433333333323333 344556666777764   46666766


Q ss_pred             HHhcCCChhHHHHHHHHHhhc----C---------CCCccHH--HHHHHHHHHHhcCcHHHHHHHHHHHhhCCCCCC-HH
Q 021791          163 EYRGRKDANGAMKLYRQMKED----D---------LCVPNIH--TYNILIGMFMALNRMDMVREIWNHVKGSELGLD-LD  226 (307)
Q Consensus       163 ~~~~~~~~~~a~~~~~~~~~~----~---------~~~~~~~--~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~  226 (307)
                      .|......+-...++......    +         ..+|+..  ++..+.+.|-..|++++|.+.++....+.  |+ +.
T Consensus       152 Ly~d~~K~~~i~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~ht--Pt~~e  229 (517)
T PF12569_consen  152 LYKDPEKAAIIESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEHT--PTLVE  229 (517)
T ss_pred             HHcChhHHHHHHHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcC--CCcHH
Confidence            777665555555666554322    1         1134443  44667888889999999999999999873  44 67


Q ss_pred             hHHHHHHHHHccCcHHHHHHHHHHHHHcCCCCcHhhHHHHHHHHhhchhHHHHHHHHHHhhhcCC
Q 021791          227 SYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDEESI  291 (307)
Q Consensus       227 ~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~  291 (307)
                      .|..-.+.+-+.|++++|.+.++...+... -|...-+-....+.+.|++++|.+++...-..+.
T Consensus       230 ly~~KarilKh~G~~~~Aa~~~~~Ar~LD~-~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~  293 (517)
T PF12569_consen  230 LYMTKARILKHAGDLKEAAEAMDEARELDL-ADRYINSKCAKYLLRAGRIEEAEKTASLFTREDV  293 (517)
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHhCCh-hhHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCC
Confidence            788889999999999999999999987743 3555566677788999999999999999977776

N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].

>KOG0495 consensus HAT repeat protein [RNA processing and modification]

Probab=99.25  E-value=1.1e-07  Score=79.18  Aligned_cols=225  Identities=10%  Similarity=0.023  Sum_probs=127.8

Q ss_pred             HHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCchhHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCChHHHHHH
Q 021791           62 EKTIRNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHKPQLSLDKLNFMKEKGICPTVATYTSVVKCLCSCGRIEDAEEL  141 (307)
Q Consensus        62 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~  141 (307)
                      ...++.|..+|.+....  .|+..+|.--+..-.-.++.++|.+++++..+. ++.-...|..+...+-+.++.+.|...
T Consensus       631 n~e~eraR~llakar~~--sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~-fp~f~Kl~lmlGQi~e~~~~ie~aR~a  707 (913)
T KOG0495|consen  631 NDELERARDLLAKARSI--SGTERVWMKSANLERYLDNVEEALRLLEEALKS-FPDFHKLWLMLGQIEEQMENIEMAREA  707 (913)
T ss_pred             cccHHHHHHHHHHHhcc--CCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHh-CCchHHHHHHHhHHHHHHHHHHHHHHH
Confidence            44455555555554432  444555544444444455555555555555544 111233444444555555555555555


Q ss_pred             HHHHHhCCCCCCHhhHHHHHHHHhcCCChhHHHHHHHHHhhcCCCCccHHHHHHHHHHHHhcCcHHHHHHHHHHHhhCC-
Q 021791          142 LGEMVRNGVSPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDDLCVPNIHTYNILIGMFMALNRMDMVREIWNHVKGSE-  220 (307)
Q Consensus       142 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-  220 (307)
                      |..=.+. ++-.+..|..+...--+.|++-+|..+++.....+  +.+...|-..|++=.+.|..+.|..++.+..+.- 
T Consensus       708 Y~~G~k~-cP~~ipLWllLakleEk~~~~~rAR~ildrarlkN--Pk~~~lwle~Ir~ElR~gn~~~a~~lmakALQecp  784 (913)
T KOG0495|consen  708 YLQGTKK-CPNSIPLWLLLAKLEEKDGQLVRARSILDRARLKN--PKNALLWLESIRMELRAGNKEQAELLMAKALQECP  784 (913)
T ss_pred             HHhcccc-CCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcC--CCcchhHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence            5443332 22244556666666666677777777777776665  5677777777777777777777777766554421 


Q ss_pred             ----------------------------CCCCHHhHHHHHHHHHccCcHHHHHHHHHHHHHcCCCCcHhhHHHHHHHHhh
Q 021791          221 ----------------------------LGLDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQ  272 (307)
Q Consensus       221 ----------------------------~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~  272 (307)
                                                  +.-|.+..-.+...|-...++++|.+.|.+..+.+ +-+..+|..+...+.+
T Consensus       785 ~sg~LWaEaI~le~~~~rkTks~DALkkce~dphVllaia~lfw~e~k~~kar~Wf~Ravk~d-~d~GD~wa~fykfel~  863 (913)
T KOG0495|consen  785 SSGLLWAEAIWLEPRPQRKTKSIDALKKCEHDPHVLLAIAKLFWSEKKIEKAREWFERAVKKD-PDNGDAWAWFYKFELR  863 (913)
T ss_pred             ccchhHHHHHHhccCcccchHHHHHHHhccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHccC-CccchHHHHHHHHHHH
Confidence                                        11144444555555666666777777777766543 2234566666666667


Q ss_pred             chhHHHHHHHHHHhhhcCCCC
Q 021791          273 SDMLRTWRRLKKKLDEESITF  293 (307)
Q Consensus       273 ~g~~~~a~~~~~~~~~~~~~~  293 (307)
                      +|.-+.-.+++.+......+.
T Consensus       864 hG~eed~kev~~~c~~~EP~h  884 (913)
T KOG0495|consen  864 HGTEEDQKEVLKKCETAEPTH  884 (913)
T ss_pred             hCCHHHHHHHHHHHhccCCCC
Confidence            776666666666665444433

>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]

Probab=99.23  E-value=7.6e-08  Score=83.33  Aligned_cols=223  Identities=9%  Similarity=0.028  Sum_probs=169.3

Q ss_pred             HHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCchhHHHHHHHHHHcCCC--CchhhHHHHHHHHHhcCChHHHH
Q 021791           62 EKTIRNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHKPQLSLDKLNFMKEKGIC--PTVATYTSVVKCLCSCGRIEDAE  139 (307)
Q Consensus        62 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~ll~~~~~~~~~~~a~  139 (307)
                      ...+..+..++...-... +-++...+.|...|.-.|++..++++...+......  .-...|-.+.++|-..|++++|.
T Consensus       249 ~~s~~~~~~ll~~ay~~n-~~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~  327 (1018)
T KOG2002|consen  249 SDSYKKGVQLLQRAYKEN-NENPVALNHLANHFYFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAF  327 (1018)
T ss_pred             hHHHHHHHHHHHHHHhhc-CCCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHH
Confidence            345566666666665543 447778888999999999999999999888766321  12345778999999999999999


Q ss_pred             HHHHHHHhCCCCCCHhhHHHHHHHHhcCCChhHHHHHHHHHhhcCCCCccHHHHHHHHHHHHhcC----cHHHHHHHHHH
Q 021791          140 ELLGEMVRNGVSPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDDLCVPNIHTYNILIGMFMALN----RMDMVREIWNH  215 (307)
Q Consensus       140 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~----~~~~a~~~~~~  215 (307)
                      ..|.+..+....-..-.+-.+.+.|.+.|+.+.+...|+.+.+..  +.+..+...|...|...+    ..+.|..++..
T Consensus       328 ~yY~~s~k~~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~--p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K  405 (1018)
T KOG2002|consen  328 KYYMESLKADNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQL--PNNYETMKILGCLYAHSAKKQEKRDKASNVLGK  405 (1018)
T ss_pred             HHHHHHHccCCCCccccccchhHHHHHhchHHHHHHHHHHHHHhC--cchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHH
Confidence            999888876433224455677888999999999999999999885  667888888888888775    56777777777


Q ss_pred             HhhCCCCCCHHhHHHHHHHHHccCcHHHHHHHHHHHH----HcCCCCcHhhHHHHHHHHhhchhHHHHHHHHHHhhhc
Q 021791          216 VKGSELGLDLDSYTMLIHGLCEKQKWKEACQYFVEMI----EKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDEE  289 (307)
Q Consensus       216 ~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~----~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~  289 (307)
                      ....- +-|...|-.+...+-.. +...++.+|....    ..+-.+.+...+.+.......|++++|...+......
T Consensus       406 ~~~~~-~~d~~a~l~laql~e~~-d~~~sL~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~  481 (1018)
T KOG2002|consen  406 VLEQT-PVDSEAWLELAQLLEQT-DPWASLDAYGNALDILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGK  481 (1018)
T ss_pred             HHhcc-cccHHHHHHHHHHHHhc-ChHHHHHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhh
Confidence            77664 33777888887777654 4444477777654    3455677888999999999999999999999887655

>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.22  E-value=1.7e-08  Score=82.25  Aligned_cols=254  Identities=9%  Similarity=-0.018  Sum_probs=198.6

Q ss_pred             cHHHHHHHHHHHHhcCchhhHHHHHHHHHhcCCCCcHHHHHHHHHHHHhhCCCCcchhhHHHHHHHHHHHHHHHhcCCCC
Q 021791            3 NVKMYTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPNERFEKTIRNAEKVFDEMRVRGIEP   82 (307)
Q Consensus         3 ~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~   82 (307)
                      +...+-.=|.++...|+..+-..+=.++.+. .+-...+|-++-.-|.-          .++..+|.+.|.+..... +.
T Consensus       277 h~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~-yP~~a~sW~aVg~YYl~----------i~k~seARry~SKat~lD-~~  344 (611)
T KOG1173|consen  277 HLPCLPLHIACLYELGKSNKLFLLSHKLVDL-YPSKALSWFAVGCYYLM----------IGKYSEARRYFSKATTLD-PT  344 (611)
T ss_pred             CcchHHHHHHHHHHhcccchHHHHHHHHHHh-CCCCCcchhhHHHHHHH----------hcCcHHHHHHHHHHhhcC-cc
Confidence            3344555677888889988888888888776 34456788888887777          778899999998876543 11


Q ss_pred             CHHHHHHHHHHHHhcCCchhHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHhhHHHHHH
Q 021791           83 DVTSFSIVLHVYSRAHKPQLSLDKLNFMKEKGICPTVATYTSVVKCLCSCGRIEDAEELLGEMVRNGVSPSAETYNCFFK  162 (307)
Q Consensus        83 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~  162 (307)
                      =...|..+...|+-.|..+.|+..|...-+. ++-...-+--+..-|.+.++.+.|.+.|.+.....+. |+...+-+.-
T Consensus       345 fgpaWl~fghsfa~e~EhdQAmaaY~tAarl-~~G~hlP~LYlgmey~~t~n~kLAe~Ff~~A~ai~P~-Dplv~~Elgv  422 (611)
T KOG1173|consen  345 FGPAWLAFGHSFAGEGEHDQAMAAYFTAARL-MPGCHLPSLYLGMEYMRTNNLKLAEKFFKQALAIAPS-DPLVLHELGV  422 (611)
T ss_pred             ccHHHHHHhHHhhhcchHHHHHHHHHHHHHh-ccCCcchHHHHHHHHHHhccHHHHHHHHHHHHhcCCC-cchhhhhhhh
Confidence            3457999999999999999999999887665 1223333445667788999999999999999876443 7778888887


Q ss_pred             HHhcCCChhHHHHHHHHHhhcC----CCC-ccHHHHHHHHHHHHhcCcHHHHHHHHHHHhhCCCCCCHHhHHHHHHHHHc
Q 021791          163 EYRGRKDANGAMKLYRQMKEDD----LCV-PNIHTYNILIGMFMALNRMDMVREIWNHVKGSELGLDLDSYTMLIHGLCE  237 (307)
Q Consensus       163 ~~~~~~~~~~a~~~~~~~~~~~----~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~  237 (307)
                      .....+.+.+|..+|......-    ... .-..+++.|..+|.+.+.+++|+..++...... +.+..++..+.-.|..
T Consensus       423 vay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l~-~k~~~~~asig~iy~l  501 (611)
T KOG1173|consen  423 VAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQKALLLS-PKDASTHASIGYIYHL  501 (611)
T ss_pred             eeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHHHHHHHHcC-CCchhHHHHHHHHHHH
Confidence            7788899999999998876221    001 134568999999999999999999999998875 3489999999999999


Q ss_pred             cCcHHHHHHHHHHHHHcCCCCcHhhHHHHHHHHhhc
Q 021791          238 KQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQS  273 (307)
Q Consensus       238 ~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~  273 (307)
                      .|+++.|++.|.+.+  .+.|+..+...++..+...
T Consensus       502 lgnld~Aid~fhKaL--~l~p~n~~~~~lL~~aie~  535 (611)
T KOG1173|consen  502 LGNLDKAIDHFHKAL--ALKPDNIFISELLKLAIED  535 (611)
T ss_pred             hcChHHHHHHHHHHH--hcCCccHHHHHHHHHHHHh
Confidence            999999999999988  5789988777777655443

>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.22  E-value=1.2e-08  Score=81.77  Aligned_cols=225  Identities=12%  Similarity=0.032  Sum_probs=162.7

Q ss_pred             HHHhcCchhhHHHHHHHHHhcCCCCcHHHHHHHHHHHHhhCCCCcchhhHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHH
Q 021791           13 GWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPNERFEKTIRNAEKVFDEMRVRGIEPDVTSFSIVLH   92 (307)
Q Consensus        13 ~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~   92 (307)
                      .+.-.|+...|.+-|+..++....++. .|--+-..|..          ..+-++..+.|+...+.+ +-|+.+|..-.+
T Consensus       335 F~fL~g~~~~a~~d~~~~I~l~~~~~~-lyI~~a~~y~d----------~~~~~~~~~~F~~A~~ld-p~n~dvYyHRgQ  402 (606)
T KOG0547|consen  335 FHFLKGDSLGAQEDFDAAIKLDPAFNS-LYIKRAAAYAD----------ENQSEKMWKDFNKAEDLD-PENPDVYYHRGQ  402 (606)
T ss_pred             hhhhcCCchhhhhhHHHHHhcCcccch-HHHHHHHHHhh----------hhccHHHHHHHHHHHhcC-CCCCchhHhHHH
Confidence            344568888888888888876433332 25555566777          777788888888887765 336677777777


Q ss_pred             HHHhcCCchhHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHhcCCChhH
Q 021791           93 VYSRAHKPQLSLDKLNFMKEKGICPTVATYTSVVKCLCSCGRIEDAEELLGEMVRNGVSPSAETYNCFFKEYRGRKDANG  172 (307)
Q Consensus        93 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  172 (307)
                      ...-.++++.|..=|++.+..... +...|-.+.-+..+.+.+++++..|++.+.. ++-.+..|+.....+...++++.
T Consensus       403 m~flL~q~e~A~aDF~Kai~L~pe-~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkk-FP~~~Evy~~fAeiLtDqqqFd~  480 (606)
T KOG0547|consen  403 MRFLLQQYEEAIADFQKAISLDPE-NAYAYIQLCCALYRQHKIAESMKTFEEAKKK-FPNCPEVYNLFAEILTDQQQFDK  480 (606)
T ss_pred             HHHHHHHHHHHHHHHHHHhhcChh-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCCchHHHHHHHHHhhHHhHHH
Confidence            777888888888888888877543 6667777777777888899999999988876 44467888888888999999999


Q ss_pred             HHHHHHHHhhcCCC------CccHHHHHHHHHHHHhcCcHHHHHHHHHHHhhCCCCCCHHhHHHHHHHHHccCcHHHHHH
Q 021791          173 AMKLYRQMKEDDLC------VPNIHTYNILIGMFMALNRMDMVREIWNHVKGSELGLDLDSYTMLIHGLCEKQKWKEACQ  246 (307)
Q Consensus       173 a~~~~~~~~~~~~~------~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~  246 (307)
                      |.+.|+...+....      .+.+.+--.++..- -.+++..|..++....+...+ ....|..|...-.+.|+.++|++
T Consensus       481 A~k~YD~ai~LE~~~~~~~v~~~plV~Ka~l~~q-wk~d~~~a~~Ll~KA~e~Dpk-ce~A~~tlaq~~lQ~~~i~eAie  558 (606)
T KOG0547|consen  481 AVKQYDKAIELEPREHLIIVNAAPLVHKALLVLQ-WKEDINQAENLLRKAIELDPK-CEQAYETLAQFELQRGKIDEAIE  558 (606)
T ss_pred             HHHHHHHHHhhccccccccccchhhhhhhHhhhc-hhhhHHHHHHHHHHHHccCch-HHHHHHHHHHHHHHHhhHHHHHH
Confidence            99998887765320      11111112222221 347888899998888876533 55678888888888999999999


Q ss_pred             HHHHHHH
Q 021791          247 YFVEMIE  253 (307)
Q Consensus       247 ~~~~~~~  253 (307)
                      +|++...
T Consensus       559 lFEksa~  565 (606)
T KOG0547|consen  559 LFEKSAQ  565 (606)
T ss_pred             HHHHHHH
Confidence            9988754

>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]

Probab=99.20  E-value=5.1e-07  Score=72.59  Aligned_cols=281  Identities=11%  Similarity=0.059  Sum_probs=159.7

Q ss_pred             ccHHHHHHHHHHHHhcCchhhHHHHHHHHHhcCCCCcHHHHHHHHHHHHhhCCCCcchhh--------------------
Q 021791            2 PNVKMYTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPNERF--------------------   61 (307)
Q Consensus         2 p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~~--------------------   61 (307)
                      |+...|++.|..=.+-+.++.|..+|+..+-.  .|++.+|--..+.=.+.|....+..+                    
T Consensus       172 P~eqaW~sfI~fElRykeieraR~IYerfV~~--HP~v~~wikyarFE~k~g~~~~aR~VyerAie~~~~d~~~e~lfva  249 (677)
T KOG1915|consen  172 PDEQAWLSFIKFELRYKEIERARSIYERFVLV--HPKVSNWIKYARFEEKHGNVALARSVYERAIEFLGDDEEAEILFVA  249 (677)
T ss_pred             CcHHHHHHHHHHHHHhhHHHHHHHHHHHHhee--cccHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence            78888899998888888889999998888764  47777776655555553332222111                    


Q ss_pred             -------HHHHHHHHHHHHHHHhcCCCCC--HHHHHHHHHHHHhcCCchhHHHH--------HHHHHHcCCCCchhhHHH
Q 021791           62 -------EKTIRNAEKVFDEMRVRGIEPD--VTSFSIVLHVYSRAHKPQLSLDK--------LNFMKEKGICPTVATYTS  124 (307)
Q Consensus        62 -------~~~~~~a~~~~~~~~~~~~~~~--~~~~~~ll~~~~~~~~~~~a~~~--------~~~~~~~~~~~~~~~~~~  124 (307)
                             ++.++.|.-+|+-.++. ++.+  ...|..+...=-+-|+.....+.        |+.+.+.+ +.|-.+|--
T Consensus       250 FA~fEe~qkE~ERar~iykyAld~-~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE~~v~~n-p~nYDsWfd  327 (677)
T KOG1915|consen  250 FAEFEERQKEYERARFIYKYALDH-IPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQYEKEVSKN-PYNYDSWFD  327 (677)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHh-cCcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhHHHHHHHhC-CCCchHHHH
Confidence                   23333344444333332 1111  12222222222223333222222        11222221 224445555


Q ss_pred             HHHHHHhcCChHHHHHHHHHHHhCCCC-------------------------------------------CCHhhHHHH-
Q 021791          125 VVKCLCSCGRIEDAEELLGEMVRNGVS-------------------------------------------PSAETYNCF-  160 (307)
Q Consensus       125 ll~~~~~~~~~~~a~~~~~~~~~~~~~-------------------------------------------~~~~~~~~l-  160 (307)
                      .+..-...|+.+...++|++.+..-++                                           -...||..+ 
T Consensus       328 ylrL~e~~g~~~~Ire~yErAIanvpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq~~l~lIPHkkFtFaKiW  407 (677)
T KOG1915|consen  328 YLRLEESVGDKDRIRETYERAIANVPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQACLDLIPHKKFTFAKIW  407 (677)
T ss_pred             HHHHHHhcCCHHHHHHHHHHHHccCCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhcCcccchHHHHH
Confidence            555555555555555555555543111                                           112222211 


Q ss_pred             ---HHHHhcCCChhHHHHHHHHHhhcCCCCccHHHHHHHHHHHHhcCcHHHHHHHHHHHhhCCCCCCHHhHHHHHHHHHc
Q 021791          161 ---FKEYRGRKDANGAMKLYRQMKEDDLCVPNIHTYNILIGMFMALNRMDMVREIWNHVKGSELGLDLDSYTMLIHGLCE  237 (307)
Q Consensus       161 ---~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~  237 (307)
                         ...-.++.+...|.+++......   .|-..+|...|..=.+.+++|.+.++++.....+.. +..+|......=..
T Consensus       408 lmyA~feIRq~~l~~ARkiLG~AIG~---cPK~KlFk~YIelElqL~efDRcRkLYEkfle~~Pe-~c~~W~kyaElE~~  483 (677)
T KOG1915|consen  408 LMYAQFEIRQLNLTGARKILGNAIGK---CPKDKLFKGYIELELQLREFDRCRKLYEKFLEFSPE-NCYAWSKYAELETS  483 (677)
T ss_pred             HHHHHHHHHHcccHHHHHHHHHHhcc---CCchhHHHHHHHHHHHHhhHHHHHHHHHHHHhcChH-hhHHHHHHHHHHHH
Confidence               22223445555555555554433   566667777777777778888888888888877533 66777777777778


Q ss_pred             cCcHHHHHHHHHHHHHcCC-CCcHhhHHHHHHHHhhchhHHHHHHHHHHhhhcC
Q 021791          238 KQKWKEACQYFVEMIEKGL-LPQKVTFETLYRGLIQSDMLRTWRRLKKKLDEES  290 (307)
Q Consensus       238 ~g~~~~a~~~~~~~~~~~~-~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~  290 (307)
                      .|+.+.|..+|.-.+++.. ......+...|+--...|.++.|+.+++.+.+..
T Consensus       484 LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~LYerlL~rt  537 (677)
T KOG1915|consen  484 LGDTDRARAIFELAISQPALDMPELLWKAYIDFEIEEGEFEKARALYERLLDRT  537 (677)
T ss_pred             hhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcchHHHHHHHHHHHHHhc
Confidence            8888888888888876632 2223456666776677888888888888876554

>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=99.18  E-value=1.5e-09  Score=84.74  Aligned_cols=251  Identities=13%  Similarity=0.072  Sum_probs=149.2

Q ss_pred             HHHHhcCchhhHHHHHHHHHhcCCCCcHHHHHHHHHHHHhhCCCCcchhhHHHHHHHHHHHHHHHhcCCCCCHHHHHHHH
Q 021791           12 YGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPNERFEKTIRNAEKVFDEMRVRGIEPDVTSFSIVL   91 (307)
Q Consensus        12 ~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll   91 (307)
                      +-+.-.|++..++.-.+ ........+......+.+++..          .|+++.   ++.++.... .|.......+.
T Consensus         9 rn~fy~G~Y~~~i~e~~-~~~~~~~~~~e~~~~~~Rs~iA----------lg~~~~---vl~ei~~~~-~~~l~av~~la   73 (290)
T PF04733_consen    9 RNQFYLGNYQQCINEAS-LKSFSPENKLERDFYQYRSYIA----------LGQYDS---VLSEIKKSS-SPELQAVRLLA   73 (290)
T ss_dssp             HHHHCTT-HHHHCHHHH-CHTSTCHHHHHHHHHHHHHHHH----------TT-HHH---HHHHS-TTS-SCCCHHHHHHH
T ss_pred             HHHHHhhhHHHHHHHhh-ccCCCchhHHHHHHHHHHHHHH----------cCChhH---HHHHhccCC-ChhHHHHHHHH
Confidence            44455678888776555 2222222234455566666766          444443   333433333 56666665555


Q ss_pred             HHHHhcCCchhHHHHHHHHHHcCCC-CchhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHhcCCCh
Q 021791           92 HVYSRAHKPQLSLDKLNFMKEKGIC-PTVATYTSVVKCLCSCGRIEDAEELLGEMVRNGVSPSAETYNCFFKEYRGRKDA  170 (307)
Q Consensus        92 ~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~  170 (307)
                      ..+...++-+.+..-+++....... .+..........+...|++++|++++...      .+.......+..|.+.+++
T Consensus        74 ~y~~~~~~~e~~l~~l~~~~~~~~~~~~~~~~~~~A~i~~~~~~~~~AL~~l~~~------~~lE~~al~Vqi~L~~~R~  147 (290)
T PF04733_consen   74 EYLSSPSDKESALEELKELLADQAGESNEIVQLLAATILFHEGDYEEALKLLHKG------GSLELLALAVQILLKMNRP  147 (290)
T ss_dssp             HHHCTSTTHHCHHHHHHHCCCTS---CHHHHHHHHHHHHCCCCHHHHHHCCCTTT------TCHHHHHHHHHHHHHTT-H
T ss_pred             HHHhCccchHHHHHHHHHHHHhccccccHHHHHHHHHHHHHcCCHHHHHHHHHcc------CcccHHHHHHHHHHHcCCH
Confidence            4444334444444444443333222 22333333335566778888888777542      3567777788888888888


Q ss_pred             hHHHHHHHHHhhcCCCCccHHHHHHHHHHHHh----cCcHHHHHHHHHHHhhCCCCCCHHhHHHHHHHHHccCcHHHHHH
Q 021791          171 NGAMKLYRQMKEDDLCVPNIHTYNILIGMFMA----LNRMDMVREIWNHVKGSELGLDLDSYTMLIHGLCEKQKWKEACQ  246 (307)
Q Consensus       171 ~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~  246 (307)
                      +.|.+.++.|.+.+   .| .+...+..++..    .+.+.+|..+|+++.+. ..+++.+.+.+..++...|++++|.+
T Consensus       148 dlA~k~l~~~~~~~---eD-~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~-~~~t~~~lng~A~~~l~~~~~~eAe~  222 (290)
T PF04733_consen  148 DLAEKELKNMQQID---ED-SILTQLAEAWVNLATGGEKYQDAFYIFEELSDK-FGSTPKLLNGLAVCHLQLGHYEEAEE  222 (290)
T ss_dssp             HHHHHHHHHHHCCS---CC-HHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCC-S--SHHHHHHHHHHHHHCT-HHHHHH
T ss_pred             HHHHHHHHHHHhcC---Cc-HHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhc-cCCCHHHHHHHHHHHHHhCCHHHHHH
Confidence            88888888887653   23 344445554443    33688888888887765 45678888888888888888888888


Q ss_pred             HHHHHHHcCCCCcHhhHHHHHHHHhhchhH-HHHHHHHHHhhhc
Q 021791          247 YFVEMIEKGLLPQKVTFETLYRGLIQSDML-RTWRRLKKKLDEE  289 (307)
Q Consensus       247 ~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~-~~a~~~~~~~~~~  289 (307)
                      ++.+..+.+ +-++.++..++.+....|+. +.+.+.+.+++..
T Consensus       223 ~L~~al~~~-~~~~d~LaNliv~~~~~gk~~~~~~~~l~qL~~~  265 (290)
T PF04733_consen  223 LLEEALEKD-PNDPDTLANLIVCSLHLGKPTEAAERYLSQLKQS  265 (290)
T ss_dssp             HHHHHCCC--CCHHHHHHHHHHHHHHTT-TCHHHHHHHHHCHHH
T ss_pred             HHHHHHHhc-cCCHHHHHHHHHHHHHhCCChhHHHHHHHHHHHh
Confidence            888877653 33566777777777777776 6677777777654

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.

>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.17  E-value=1.1e-07  Score=74.98  Aligned_cols=262  Identities=11%  Similarity=0.011  Sum_probs=161.0

Q ss_pred             cHHHHHHHHHHHHhcCchhhHHHHHHHHHhcCCCCcHH----HHHHHHHHHHhhCCCCcchhhHHHHHHHHHHHHHHHhc
Q 021791            3 NVKMYTSLIYGWCKINRIDMAERFLGEMIERGVEPNVV----TYNVLLNGVCRRASLHPNERFEKTIRNAEKVFDEMRVR   78 (307)
Q Consensus         3 ~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~----~~~~ll~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~   78 (307)
                      |+.....+...+...|+.++|+..|++....  .|...    .|..|+.   +          .|++++...+...+...
T Consensus       231 NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~--dpy~i~~MD~Ya~LL~---~----------eg~~e~~~~L~~~Lf~~  295 (564)
T KOG1174|consen  231 NEHLMMALGKCLYYNGDYFQAEDIFSSTLCA--NPDNVEAMDLYAVLLG---Q----------EGGCEQDSALMDYLFAK  295 (564)
T ss_pred             cHHHHHHHhhhhhhhcCchHHHHHHHHHhhC--ChhhhhhHHHHHHHHH---h----------ccCHhhHHHHHHHHHhh
Confidence            3444455555555566666666666555443  22211    2222221   2          33444444444444332


Q ss_pred             CCCCCHHHHHHHHHHHHhcCCchhHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHhhHH
Q 021791           79 GIEPDVTSFSIVLHVYSRAHKPQLSLDKLNFMKEKGICPTVATYTSVVKCLCSCGRIEDAEELLGEMVRNGVSPSAETYN  158 (307)
Q Consensus        79 ~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~  158 (307)
                      . +-....|-.-+.......+++.|+.+-++.++.... +...+-.-...+...+++++|.-.|...+...+ -+...|.
T Consensus       296 ~-~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~~r-~~~alilKG~lL~~~~R~~~A~IaFR~Aq~Lap-~rL~~Y~  372 (564)
T KOG1174|consen  296 V-KYTASHWFVHAQLLYDEKKFERALNFVEKCIDSEPR-NHEALILKGRLLIALERHTQAVIAFRTAQMLAP-YRLEIYR  372 (564)
T ss_pred             h-hcchhhhhhhhhhhhhhhhHHHHHHHHHHHhccCcc-cchHHHhccHHHHhccchHHHHHHHHHHHhcch-hhHHHHH
Confidence            1 113333444444445556666777776666665432 455555555667778888888888887766432 2667888


Q ss_pred             HHHHHHhcCCChhHHHHHHHHHhhcCCCCccHHHHHHHH-HHHHh-cCcHHHHHHHHHHHhhCCCCCC-HHhHHHHHHHH
Q 021791          159 CFFKEYRGRKDANGAMKLYRQMKEDDLCVPNIHTYNILI-GMFMA-LNRMDMVREIWNHVKGSELGLD-LDSYTMLIHGL  235 (307)
Q Consensus       159 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~-~~~~~-~~~~~~a~~~~~~~~~~~~~~~-~~~~~~li~~~  235 (307)
                      .|+.+|...|.+.+|.-+-+...+.-  +.+..+.+.+. ..|.- ...-++|.++++.....  .|+ ....+.+.+.+
T Consensus       373 GL~hsYLA~~~~kEA~~~An~~~~~~--~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~--~P~Y~~AV~~~AEL~  448 (564)
T KOG1174|consen  373 GLFHSYLAQKRFKEANALANWTIRLF--QNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLKI--NPIYTPAVNLIAELC  448 (564)
T ss_pred             HHHHHHHhhchHHHHHHHHHHHHHHh--hcchhhhhhhcceeeccCchhHHHHHHHHHhhhcc--CCccHHHHHHHHHHH
Confidence            88888888888888877776665542  44555555542 22222 22346677777776654  344 44677788888


Q ss_pred             HccCcHHHHHHHHHHHHHcCCCCcHhhHHHHHHHHhhchhHHHHHHHHHHhhh
Q 021791          236 CEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDE  288 (307)
Q Consensus       236 ~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~  288 (307)
                      ...|..+.++.++++.+.  ..||....+.|.+.+...+.++++.+.|.....
T Consensus       449 ~~Eg~~~D~i~LLe~~L~--~~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr  499 (564)
T KOG1174|consen  449 QVEGPTKDIIKLLEKHLI--IFPDVNLHNHLGDIMRAQNEPQKAMEYYYKALR  499 (564)
T ss_pred             HhhCccchHHHHHHHHHh--hccccHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence            889999999999998885  478888888888888888888888887766543

>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals

Probab=99.13  E-value=9.9e-07  Score=72.24  Aligned_cols=273  Identities=7%  Similarity=-0.052  Sum_probs=167.0

Q ss_pred             HHHHHHHHHHHHhcCchhhHHHHHHHHHhcCC-CCcHHHHHHH-HHHHHhhCCCCcchhhHHHHHHHHHHHHHHHhcCCC
Q 021791            4 VKMYTSLIYGWCKINRIDMAERFLGEMIERGV-EPNVVTYNVL-LNGVCRRASLHPNERFEKTIRNAEKVFDEMRVRGIE   81 (307)
Q Consensus         4 ~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~-~p~~~~~~~l-l~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~   81 (307)
                      +..|..+...+...|+.+.+.+.+....+... .++......+ ...+..          .+++++|.+.+++..+.. +
T Consensus         6 ~~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~----------~g~~~~A~~~~~~~l~~~-P   74 (355)
T cd05804           6 ALGHAAAALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWI----------AGDLPKALALLEQLLDDY-P   74 (355)
T ss_pred             HHHHHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHH----------cCCHHHHHHHHHHHHHHC-C
Confidence            45566677777778888888777777655421 2233222222 112233          678899999999988763 3


Q ss_pred             CCHHHHHHHHHHHHh----cCCchhHHHHHHHHHHcCCCCc-hhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHhh
Q 021791           82 PDVTSFSIVLHVYSR----AHKPQLSLDKLNFMKEKGICPT-VATYTSVVKCLCSCGRIEDAEELLGEMVRNGVSPSAET  156 (307)
Q Consensus        82 ~~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~  156 (307)
                      .+...+.. ...+..    .+....+.+.+...  ....|+ ......+...+...|++++|...+++..+.... +...
T Consensus        75 ~~~~a~~~-~~~~~~~~~~~~~~~~~~~~l~~~--~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~p~-~~~~  150 (355)
T cd05804          75 RDLLALKL-HLGAFGLGDFSGMRDHVARVLPLW--APENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELNPD-DAWA  150 (355)
T ss_pred             CcHHHHHH-hHHHHHhcccccCchhHHHHHhcc--CcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-CcHH
Confidence            34444442 223333    34445555555441  112223 344456667888999999999999999987543 5677


Q ss_pred             HHHHHHHHhcCCChhHHHHHHHHHhhcCCCCccH--HHHHHHHHHHHhcCcHHHHHHHHHHHhhCCC-CCCHHhH-H--H
Q 021791          157 YNCFFKEYRGRKDANGAMKLYRQMKEDDLCVPNI--HTYNILIGMFMALNRMDMVREIWNHVKGSEL-GLDLDSY-T--M  230 (307)
Q Consensus       157 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~-~--~  230 (307)
                      +..+...+...|++++|...+.+........++.  ..|..+...+...|++++|..+++....... .+..... +  .
T Consensus       151 ~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~  230 (355)
T cd05804         151 VHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIAPSAESDPALDLLDAAS  230 (355)
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhccccCCChHHHHhhHHH
Confidence            8888899999999999999999988764212332  3455788889999999999999999864432 1122111 1  2


Q ss_pred             HHHHHHccCcHHHHHHH--HHHHHHcCC--CCcHhhHHHHHHHHhhchhHHHHHHHHHHhhhcCC
Q 021791          231 LIHGLCEKQKWKEACQY--FVEMIEKGL--LPQKVTFETLYRGLIQSDMLRTWRRLKKKLDEESI  291 (307)
Q Consensus       231 li~~~~~~g~~~~a~~~--~~~~~~~~~--~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~  291 (307)
                      ++.-+...|....+..+  +........  ............++...|+.+.|...++.+.....
T Consensus       231 ~l~~~~~~g~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~L~~l~~~~~  295 (355)
T cd05804         231 LLWRLELAGHVDVGDRWEDLADYAAWHFPDHGLAFNDLHAALALAGAGDKDALDKLLAALKGRAS  295 (355)
T ss_pred             HHHHHHhcCCCChHHHHHHHHHHHHhhcCcccchHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHh
Confidence            23333344432222222  111111111  11112223466678889999999999998866443

A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.

>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]

Probab=99.11  E-value=1.9e-06  Score=69.43  Aligned_cols=220  Identities=15%  Similarity=0.140  Sum_probs=133.6

Q ss_pred             HHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCchhHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCChHHHHHH
Q 021791           62 EKTIRNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHKPQLSLDKLNFMKEKGICPTVATYTSVVKCLCSCGRIEDAEEL  141 (307)
Q Consensus        62 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~  141 (307)
                      .|++..|.++|++-.+.  .|+...|++.++.=.+...++.|..+|+...-.  .|+..+|-.....--+.|+...|..+
T Consensus       154 LgNi~gaRqiferW~~w--~P~eqaW~sfI~fElRykeieraR~IYerfV~~--HP~v~~wikyarFE~k~g~~~~aR~V  229 (677)
T KOG1915|consen  154 LGNIAGARQIFERWMEW--EPDEQAWLSFIKFELRYKEIERARSIYERFVLV--HPKVSNWIKYARFEEKHGNVALARSV  229 (677)
T ss_pred             hcccHHHHHHHHHHHcC--CCcHHHHHHHHHHHHHhhHHHHHHHHHHHHhee--cccHHHHHHHHHHHHhcCcHHHHHHH
Confidence            66777788888877765  788888888888888888888888888887754  47888888888888888888888888


Q ss_pred             HHHHHhC-CC-CCCHhhHHHHHHHHhcCCChhHHHHHHHHH---------------------------------------
Q 021791          142 LGEMVRN-GV-SPSAETYNCFFKEYRGRKDANGAMKLYRQM---------------------------------------  180 (307)
Q Consensus       142 ~~~~~~~-~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~---------------------------------------  180 (307)
                      |+...+. |- .-+...+.++...-.++..++.|.-+|.-.                                       
T Consensus       230 yerAie~~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~  309 (677)
T KOG1915|consen  230 YERAIEFLGDDEEAEILFVAFAEFEERQKEYERARFIYKYALDHIPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKF  309 (677)
T ss_pred             HHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhh
Confidence            8887653 10 001122222222222233333333322221                                       


Q ss_pred             -----hhcCCCCccHHHHHHHHHHHHhcCcHHHHHHHHHHHhhCCCCCC-------------------------------
Q 021791          181 -----KEDDLCVPNIHTYNILIGMFMALNRMDMVREIWNHVKGSELGLD-------------------------------  224 (307)
Q Consensus       181 -----~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-------------------------------  224 (307)
                           ...+  +-|..+|-..++.-...|+.+...++++..... ++|-                               
T Consensus       310 qYE~~v~~n--p~nYDsWfdylrL~e~~g~~~~Ire~yErAIan-vpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr  386 (677)
T KOG1915|consen  310 QYEKEVSKN--PYNYDSWFDYLRLEESVGDKDRIRETYERAIAN-VPPASEKRYWRRYIYLWINYALYEELEAEDVERTR  386 (677)
T ss_pred             HHHHHHHhC--CCCchHHHHHHHHHHhcCCHHHHHHHHHHHHcc-CCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHH
Confidence                 1111  345555555555555666666666666666553 2221                               


Q ss_pred             -------------HHhHH----HHHHHHHccCcHHHHHHHHHHHHHcCCCCcHhhHHHHHHHHhhchhHHHHHHHHHHhh
Q 021791          225 -------------LDSYT----MLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLD  287 (307)
Q Consensus       225 -------------~~~~~----~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~  287 (307)
                                   ..||.    ....--.++.+...|.+++...+  |..|...+|...|..-.+.++++.++.++++..
T Consensus       387 ~vyq~~l~lIPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AI--G~cPK~KlFk~YIelElqL~efDRcRkLYEkfl  464 (677)
T KOG1915|consen  387 QVYQACLDLIPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAI--GKCPKDKLFKGYIELELQLREFDRCRKLYEKFL  464 (677)
T ss_pred             HHHHHHHhhcCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHh--ccCCchhHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence                         11111    11112234445555555555554  567777777777777777777888888777776


Q ss_pred             hcC
Q 021791          288 EES  290 (307)
Q Consensus       288 ~~~  290 (307)
                      +.+
T Consensus       465 e~~  467 (677)
T KOG1915|consen  465 EFS  467 (677)
T ss_pred             hcC
Confidence            554

>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals

Probab=99.10  E-value=7.7e-07  Score=72.88  Aligned_cols=270  Identities=8%  Similarity=-0.050  Sum_probs=166.1

Q ss_pred             HHHHHhcCchhhHHHHHHHHHhcCCCCcHHHHHHHHHHHHhhCCCCcchhhHHHHHHHHHHHHHHHhcCCCCCHHHHHHH
Q 021791           11 IYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPNERFEKTIRNAEKVFDEMRVRGIEPDVTSFSIV   90 (307)
Q Consensus        11 i~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l   90 (307)
                      ...+...|++++|.+.+++..+.. +.+...+.. ...+...|..      .+....+.+.+... ....+........+
T Consensus        50 a~~~~~~g~~~~A~~~~~~~l~~~-P~~~~a~~~-~~~~~~~~~~------~~~~~~~~~~l~~~-~~~~~~~~~~~~~~  120 (355)
T cd05804          50 ALSAWIAGDLPKALALLEQLLDDY-PRDLLALKL-HLGAFGLGDF------SGMRDHVARVLPLW-APENPDYWYLLGML  120 (355)
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHH-hHHHHHhccc------ccCchhHHHHHhcc-CcCCCCcHHHHHHH
Confidence            345667899999999999988762 223334432 2233333322      23334455555441 11122233455566


Q ss_pred             HHHHHhcCCchhHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCC-CCH--hhHHHHHHHHhcC
Q 021791           91 LHVYSRAHKPQLSLDKLNFMKEKGICPTVATYTSVVKCLCSCGRIEDAEELLGEMVRNGVS-PSA--ETYNCFFKEYRGR  167 (307)
Q Consensus        91 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~-~~~--~~~~~l~~~~~~~  167 (307)
                      ...+...|++++|...+++..+.... +...+..+...+...|++++|...+++....... |+.  ..|..+...+...
T Consensus       121 a~~~~~~G~~~~A~~~~~~al~~~p~-~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~  199 (355)
T cd05804         121 AFGLEEAGQYDRAEEAARRALELNPD-DAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLER  199 (355)
T ss_pred             HHHHHHcCCHHHHHHHHHHHHhhCCC-CcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHC
Confidence            77888999999999999999987533 6777888999999999999999999998875322 222  3455788889999


Q ss_pred             CChhHHHHHHHHHhhcCCCCccHHHH-H--HHHHHHHhcCcHHHHHHH---HHHHhhCCC-CCCHHhHHHHHHHHHccCc
Q 021791          168 KDANGAMKLYRQMKEDDLCVPNIHTY-N--ILIGMFMALNRMDMVREI---WNHVKGSEL-GLDLDSYTMLIHGLCEKQK  240 (307)
Q Consensus       168 ~~~~~a~~~~~~~~~~~~~~~~~~~~-~--~l~~~~~~~~~~~~a~~~---~~~~~~~~~-~~~~~~~~~li~~~~~~g~  240 (307)
                      |++++|..++++........+..... +  .++.-+...|..+.+.+.   ......... ............++...|+
T Consensus       200 G~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~  279 (355)
T cd05804         200 GDYEAALAIYDTHIAPSAESDPALDLLDAASLLWRLELAGHVDVGDRWEDLADYAAWHFPDHGLAFNDLHAALALAGAGD  279 (355)
T ss_pred             CCHHHHHHHHHHHhccccCCChHHHHhhHHHHHHHHHhcCCCChHHHHHHHHHHHHhhcCcccchHHHHHHHHHHhcCCC
Confidence            99999999999986443111222211 1  223333334433322222   111111100 1111222356677788999


Q ss_pred             HHHHHHHHHHHHHcCCC------CcHhhHHHHH--HHHhhchhHHHHHHHHHHhhhcC
Q 021791          241 WKEACQYFVEMIEKGLL------PQKVTFETLY--RGLIQSDMLRTWRRLKKKLDEES  290 (307)
Q Consensus       241 ~~~a~~~~~~~~~~~~~------p~~~~~~~l~--~~~~~~g~~~~a~~~~~~~~~~~  290 (307)
                      .++|...++.+......      ....+-..++  -++...|+.++|.+.+.......
T Consensus       280 ~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~l~A~~~~~~g~~~~A~~~L~~al~~a  337 (355)
T cd05804         280 KDALDKLLAALKGRASSADDNKQPARDVGLPLAEALYAFAEGNYATALELLGPVRDDL  337 (355)
T ss_pred             HHHHHHHHHHHHHHHhccCchhhhHHhhhHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence            99999999998764222      0111222233  34668999999999988776544

A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.

>PLN02789 farnesyltranstransferase

Probab=99.07  E-value=1.2e-06  Score=69.60  Aligned_cols=214  Identities=11%  Similarity=0.060  Sum_probs=148.2

Q ss_pred             HHHHHHHHHHhcCchhhHHHHHHHHHhcCCCCc-HHHHHHHHHHHHhhCCCCcchhhHH-HHHHHHHHHHHHHhcCCCCC
Q 021791            6 MYTSLIYGWCKINRIDMAERFLGEMIERGVEPN-VVTYNVLLNGVCRRASLHPNERFEK-TIRNAEKVFDEMRVRGIEPD   83 (307)
Q Consensus         6 ~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~-~~~~~~ll~~~~~~~~~~~~~~~~~-~~~~a~~~~~~~~~~~~~~~   83 (307)
                      +++.+-..+...++.++|+.+.+++++.  .|+ ..+|+..-.++..          .+ .+++++..++++.+... .+
T Consensus        39 a~~~~ra~l~~~e~serAL~lt~~aI~l--nP~~ytaW~~R~~iL~~----------L~~~l~eeL~~~~~~i~~np-kn  105 (320)
T PLN02789         39 AMDYFRAVYASDERSPRALDLTADVIRL--NPGNYTVWHFRRLCLEA----------LDADLEEELDFAEDVAEDNP-KN  105 (320)
T ss_pred             HHHHHHHHHHcCCCCHHHHHHHHHHHHH--CchhHHHHHHHHHHHHH----------cchhHHHHHHHHHHHHHHCC-cc
Confidence            4555566667778899999999998876  343 3456555555555          44 57889999988887743 35


Q ss_pred             HHHHHHHHHHHHhcCCc--hhHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHhhHHHHH
Q 021791           84 VTSFSIVLHVYSRAHKP--QLSLDKLNFMKEKGICPTVATYTSVVKCLCSCGRIEDAEELLGEMVRNGVSPSAETYNCFF  161 (307)
Q Consensus        84 ~~~~~~ll~~~~~~~~~--~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~  161 (307)
                      ..+|+.-...+.+.|+.  ++++.+++.+.+.... +..+|+.....+...|+++++++.++++++.++. +...|+...
T Consensus       106 yqaW~~R~~~l~~l~~~~~~~el~~~~kal~~dpk-Ny~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~-N~sAW~~R~  183 (320)
T PLN02789        106 YQIWHHRRWLAEKLGPDAANKELEFTRKILSLDAK-NYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVR-NNSAWNQRY  183 (320)
T ss_pred             hHHhHHHHHHHHHcCchhhHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCC-chhHHHHHH
Confidence            56677666566666653  6678888888877654 7888888888888889999999999999887765 666776665


Q ss_pred             HHHhcC---CCh----hHHHHHHHHHhhcCCCCccHHHHHHHHHHHHhc----CcHHHHHHHHHHHhhCCCCCCHHhHHH
Q 021791          162 KEYRGR---KDA----NGAMKLYRQMKEDDLCVPNIHTYNILIGMFMAL----NRMDMVREIWNHVKGSELGLDLDSYTM  230 (307)
Q Consensus       162 ~~~~~~---~~~----~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----~~~~~a~~~~~~~~~~~~~~~~~~~~~  230 (307)
                      ..+.+.   |..    ++.+....+.....  +-|...|+.+...+...    +...+|.+.+.+....++ .+......
T Consensus       184 ~vl~~~~~l~~~~~~~e~el~y~~~aI~~~--P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~~-~s~~al~~  260 (320)
T PLN02789        184 FVITRSPLLGGLEAMRDSELKYTIDAILAN--PRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKDS-NHVFALSD  260 (320)
T ss_pred             HHHHhccccccccccHHHHHHHHHHHHHhC--CCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhcccC-CcHHHHHH
Confidence            555443   222    45666666666654  66777888777777663    344567777777665432 25666777


Q ss_pred             HHHHHHc
Q 021791          231 LIHGLCE  237 (307)
Q Consensus       231 li~~~~~  237 (307)
                      |+..|+.
T Consensus       261 l~d~~~~  267 (320)
T PLN02789        261 LLDLLCE  267 (320)
T ss_pred             HHHHHHh
Confidence            7777764

>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]

Probab=99.07  E-value=5.7e-07  Score=80.95  Aligned_cols=234  Identities=10%  Similarity=0.060  Sum_probs=185.0

Q ss_pred             cHHHHHHHHHHHHhhCCCCcchhhHHHHHHHHHHHHHHHhcCCCCC-----HHHHHHHHHHHHhcCCchhHHHHHHHHHH
Q 021791           38 NVVTYNVLLNGVCRRASLHPNERFEKTIRNAEKVFDEMRVRGIEPD-----VTSFSIVLHVYSRAHKPQLSLDKLNFMKE  112 (307)
Q Consensus        38 ~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~-----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~  112 (307)
                      +...|-..|.....          .+++++|.++.++.... +.+.     .-.|.++++.-...|.-+...++|+++.+
T Consensus      1457 SSi~WI~YMaf~Le----------lsEiekAR~iaerAL~t-IN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcq 1525 (1710)
T KOG1070|consen 1457 SSILWIRYMAFHLE----------LSEIEKARKIAERALKT-INFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQ 1525 (1710)
T ss_pred             cchHHHHHHHHHhh----------hhhhHHHHHHHHHHhhh-CCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHH
Confidence            45678888888888          88999999999998765 3222     23677888877788888899999999988


Q ss_pred             cCCCCchhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHhcCCChhHHHHHHHHHhhcCCCCccHHH
Q 021791          113 KGICPTVATYTSVVKCLCSCGRIEDAEELLGEMVRNGVSPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDDLCVPNIHT  192 (307)
Q Consensus       113 ~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~  192 (307)
                      ..  .....|..|...|.+.+.+++|-++++.|.+. +.-....|...+..+.+.++-+.|..++.+..+.-.-.-....
T Consensus      1526 yc--d~~~V~~~L~~iy~k~ek~~~A~ell~~m~KK-F~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~ 1602 (1710)
T KOG1070|consen 1526 YC--DAYTVHLKLLGIYEKSEKNDEADELLRLMLKK-FGQTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEF 1602 (1710)
T ss_pred             hc--chHHHHHHHHHHHHHhhcchhHHHHHHHHHHH-hcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHH
Confidence            73  24557889999999999999999999999876 2347789999999999999999999999998876310113445


Q ss_pred             HHHHHHHHHhcCcHHHHHHHHHHHhhCCCCCCHHhHHHHHHHHHccCcHHHHHHHHHHHHHcCCCCcHh--hHHHHHHHH
Q 021791          193 YNILIGMFMALNRMDMVREIWNHVKGSELGLDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKV--TFETLYRGL  270 (307)
Q Consensus       193 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~--~~~~l~~~~  270 (307)
                      ..-.++.-.+.|+.+.++.+|+...... +.-...|+.+|+.-.++|+.+.+..+|++.+..++.|-..  .|...+..-
T Consensus      1603 IskfAqLEFk~GDaeRGRtlfEgll~ay-PKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~kkmKfffKkwLeyE 1681 (1710)
T KOG1070|consen 1603 ISKFAQLEFKYGDAERGRTLFEGLLSAY-PKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIKKMKFFFKKWLEYE 1681 (1710)
T ss_pred             HHHHHHHHhhcCCchhhHHHHHHHHhhC-ccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChhHhHHHHHHHHHHH
Confidence            5556666678999999999999988763 3367789999999999999999999999999998877653  466666666


Q ss_pred             hhchhHHHHHHHHHHh
Q 021791          271 IQSDMLRTWRRLKKKL  286 (307)
Q Consensus       271 ~~~g~~~~a~~~~~~~  286 (307)
                      .+.|+-+.++.+-.+.
T Consensus      1682 k~~Gde~~vE~VKarA 1697 (1710)
T KOG1070|consen 1682 KSHGDEKNVEYVKARA 1697 (1710)
T ss_pred             HhcCchhhHHHHHHHH
Confidence            6667766666555444

>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=99.01  E-value=3.4e-08  Score=77.31  Aligned_cols=221  Identities=13%  Similarity=0.100  Sum_probs=146.1

Q ss_pred             HHHHHHHHhcCchhhHHHHHHHHHhcCCCCcHHHHHHHHHHHHhhCCCCcchhhHHHHHHHHHHHHHHHhcCCC-CCHHH
Q 021791            8 TSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPNERFEKTIRNAEKVFDEMRVRGIE-PDVTS   86 (307)
Q Consensus         8 ~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~   86 (307)
                      --+.+++...|+++.++   .++.... .|.......+...+..          .++-+.+..-+++....+.. .+...
T Consensus        39 ~~~~Rs~iAlg~~~~vl---~ei~~~~-~~~l~av~~la~y~~~----------~~~~e~~l~~l~~~~~~~~~~~~~~~  104 (290)
T PF04733_consen   39 FYQYRSYIALGQYDSVL---SEIKKSS-SPELQAVRLLAEYLSS----------PSDKESALEELKELLADQAGESNEIV  104 (290)
T ss_dssp             HHHHHHHHHTT-HHHHH---HHS-TTS-SCCCHHHHHHHHHHCT----------STTHHCHHHHHHHCCCTS---CHHHH
T ss_pred             HHHHHHHHHcCChhHHH---HHhccCC-ChhHHHHHHHHHHHhC----------ccchHHHHHHHHHHHHhccccccHHH
Confidence            34667777777766433   4443333 6666665555443332          12234444444444433333 23333


Q ss_pred             HHHHHHHHHhcCCchhHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHhhHHHHHH----
Q 021791           87 FSIVLHVYSRAHKPQLSLDKLNFMKEKGICPTVATYTSVVKCLCSCGRIEDAEELLGEMVRNGVSPSAETYNCFFK----  162 (307)
Q Consensus        87 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~----  162 (307)
                      .......+...|++++|++++...      .+.......+..|.+.++++.|.+.++.|.+.+  .| .+...+..    
T Consensus       105 ~~~~A~i~~~~~~~~~AL~~l~~~------~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~~--eD-~~l~qLa~awv~  175 (290)
T PF04733_consen  105 QLLAATILFHEGDYEEALKLLHKG------GSLELLALAVQILLKMNRPDLAEKELKNMQQID--ED-SILTQLAEAWVN  175 (290)
T ss_dssp             HHHHHHHHCCCCHHHHHHCCCTTT------TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHCCS--CC-HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHcc------CcccHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--Cc-HHHHHHHHHHHH
Confidence            333445566789999999888642      366777888999999999999999999998763  23 33333433    


Q ss_pred             HHhcCCChhHHHHHHHHHhhcCCCCccHHHHHHHHHHHHhcCcHHHHHHHHHHHhhCCCCCCHHhHHHHHHHHHccCcH-
Q 021791          163 EYRGRKDANGAMKLYRQMKEDDLCVPNIHTYNILIGMFMALNRMDMVREIWNHVKGSELGLDLDSYTMLIHGLCEKQKW-  241 (307)
Q Consensus       163 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~-  241 (307)
                      .....+.+.+|..+|+++....  ++++.+.+.+..++...|++++|.+++.+....+.. +..+...++.+....|+. 
T Consensus       176 l~~g~e~~~~A~y~f~El~~~~--~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~-~~d~LaNliv~~~~~gk~~  252 (290)
T PF04733_consen  176 LATGGEKYQDAFYIFEELSDKF--GSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPN-DPDTLANLIVCSLHLGKPT  252 (290)
T ss_dssp             HHHTTTCCCHHHHHHHHHHCCS----SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CC-HHHHHHHHHHHHHHTT-TC
T ss_pred             HHhCchhHHHHHHHHHHHHhcc--CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccC-CHHHHHHHHHHHHHhCCCh
Confidence            3344557999999999998764  688899999999999999999999999998876533 677777788888888887 


Q ss_pred             HHHHHHHHHHHHc
Q 021791          242 KEACQYFVEMIEK  254 (307)
Q Consensus       242 ~~a~~~~~~~~~~  254 (307)
                      +.+.+++.++.+.
T Consensus       253 ~~~~~~l~qL~~~  265 (290)
T PF04733_consen  253 EAAERYLSQLKQS  265 (290)
T ss_dssp             HHHHHHHHHCHHH
T ss_pred             hHHHHHHHHHHHh
Confidence            6778888888765

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.

>KOG1125 consensus TPR repeat-containing protein [General function prediction only]

Probab=99.00  E-value=2.1e-07  Score=76.28  Aligned_cols=253  Identities=11%  Similarity=0.042  Sum_probs=184.8

Q ss_pred             HHHHhcCchhhHHHHHHHHHhcCCCCcHHHHHHHHHHHHhhCCCCcchhhHHHHHHHHHHHHHHHhcCCCCCHHHHHHHH
Q 021791           12 YGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPNERFEKTIRNAEKVFDEMRVRGIEPDVTSFSIVL   91 (307)
Q Consensus        12 ~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll   91 (307)
                      .-+.+.|++.+|.=.|+..++.+ +-+...|.-|-.....          .++-..|+..+.+..+.. +-|....-.|.
T Consensus       293 ~~lm~nG~L~~A~LafEAAVkqd-P~haeAW~~LG~~qaE----------NE~E~~ai~AL~rcl~Ld-P~NleaLmaLA  360 (579)
T KOG1125|consen  293 CNLMKNGDLSEAALAFEAAVKQD-PQHAEAWQKLGITQAE----------NENEQNAISALRRCLELD-PTNLEALMALA  360 (579)
T ss_pred             HHHHhcCCchHHHHHHHHHHhhC-hHHHHHHHHhhhHhhh----------ccchHHHHHHHHHHHhcC-CccHHHHHHHH
Confidence            34678899999999999988873 2367788888887777          666778888898888874 33677788888


Q ss_pred             HHHHhcCCchhHHHHHHHHHHcCCCC--------chhhHHHHHHHHHhcCChHHHHHHHHHHH-hCCCCCCHhhHHHHHH
Q 021791           92 HVYSRAHKPQLSLDKLNFMKEKGICP--------TVATYTSVVKCLCSCGRIEDAEELLGEMV-RNGVSPSAETYNCFFK  162 (307)
Q Consensus        92 ~~~~~~~~~~~a~~~~~~~~~~~~~~--------~~~~~~~ll~~~~~~~~~~~a~~~~~~~~-~~~~~~~~~~~~~l~~  162 (307)
                      -.|...|.-..|++.++..+...++-        +...-..  ..+.....+....++|-++. ..+..+|+.+...|.-
T Consensus       361 VSytNeg~q~~Al~~L~~Wi~~~p~y~~l~~a~~~~~~~~~--~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGV  438 (579)
T KOG1125|consen  361 VSYTNEGLQNQALKMLDKWIRNKPKYVHLVSAGENEDFENT--KSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGV  438 (579)
T ss_pred             HHHhhhhhHHHHHHHHHHHHHhCccchhccccCccccccCC--cCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHH
Confidence            89999999999999998886653210        0000000  12222334445556665555 4454578899999999


Q ss_pred             HHhcCCChhHHHHHHHHHhhcCCCCccHHHHHHHHHHHHhcCcHHHHHHHHHHHhhCCCCCC-HHhHHHHHHHHHccCcH
Q 021791          163 EYRGRKDANGAMKLYRQMKEDDLCVPNIHTYNILIGMFMALNRMDMVREIWNHVKGSELGLD-LDSYTMLIHGLCEKQKW  241 (307)
Q Consensus       163 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~li~~~~~~g~~  241 (307)
                      .|.-.|++++|.+.|+......  +-|..+||.|...++...+.++|+..+.+..+.  .|+ +++.-.|.-+|...|.+
T Consensus       439 Ly~ls~efdraiDcf~~AL~v~--Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqL--qP~yVR~RyNlgIS~mNlG~y  514 (579)
T KOG1125|consen  439 LYNLSGEFDRAVDCFEAALQVK--PNDYLLWNRLGATLANGNRSEEAISAYNRALQL--QPGYVRVRYNLGISCMNLGAY  514 (579)
T ss_pred             HHhcchHHHHHHHHHHHHHhcC--CchHHHHHHhhHHhcCCcccHHHHHHHHHHHhc--CCCeeeeehhhhhhhhhhhhH
Confidence            9999999999999999999886  778999999999999999999999999999986  454 44555566678999999


Q ss_pred             HHHHHHHHHHHHc---------CCCCcHhhHHHHHHHHhhchhHHHHHHH
Q 021791          242 KEACQYFVEMIEK---------GLLPQKVTFETLYRGLIQSDMLRTWRRL  282 (307)
Q Consensus       242 ~~a~~~~~~~~~~---------~~~p~~~~~~~l~~~~~~~g~~~~a~~~  282 (307)
                      ++|.+.|-..+..         +..++...|..|=.++...++.|.+.++
T Consensus       515 kEA~~hlL~AL~mq~ks~~~~~~~~~se~iw~tLR~als~~~~~D~l~~a  564 (579)
T KOG1125|consen  515 KEAVKHLLEALSMQRKSRNHNKAPMASENIWQTLRLALSAMNRSDLLQEA  564 (579)
T ss_pred             HHHHHHHHHHHHhhhcccccccCCcchHHHHHHHHHHHHHcCCchHHHHh
Confidence            9999998876543         1122334566665566666665544433

>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]

Probab=98.99  E-value=9.6e-08  Score=80.32  Aligned_cols=207  Identities=14%  Similarity=0.055  Sum_probs=165.2

Q ss_pred             HHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCchhHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCChHHHHHH
Q 021791           62 EKTIRNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHKPQLSLDKLNFMKEKGICPTVATYTSVVKCLCSCGRIEDAEEL  141 (307)
Q Consensus        62 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~  141 (307)
                      .|-...|..+|+++.         .|...+.+|...|+..+|..+..+..++  +||+..|..+.+......-+++|.++
T Consensus       411 lGitksAl~I~Erle---------mw~~vi~CY~~lg~~~kaeei~~q~lek--~~d~~lyc~LGDv~~d~s~yEkawEl  479 (777)
T KOG1128|consen  411 LGITKSALVIFERLE---------MWDPVILCYLLLGQHGKAEEINRQELEK--DPDPRLYCLLGDVLHDPSLYEKAWEL  479 (777)
T ss_pred             cchHHHHHHHHHhHH---------HHHHHHHHHHHhcccchHHHHHHHHhcC--CCcchhHHHhhhhccChHHHHHHHHH
Confidence            677788888887754         4667888999999999999999888874  68999999999888888888899988


Q ss_pred             HHHHHhCCCCCCHhhHHHHHHHHhcCCChhHHHHHHHHHhhcCCCCccHHHHHHHHHHHHhcCcHHHHHHHHHHHhhCCC
Q 021791          142 LGEMVRNGVSPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDDLCVPNIHTYNILIGMFMALNRMDMVREIWNHVKGSEL  221 (307)
Q Consensus       142 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~  221 (307)
                      .+.....       .-..+.....+.++++++.+.|+.-.+.+  +.-..+|-.+..+..+.++++.|.+.|........
T Consensus       480 sn~~sar-------A~r~~~~~~~~~~~fs~~~~hle~sl~~n--plq~~~wf~~G~~ALqlek~q~av~aF~rcvtL~P  550 (777)
T KOG1128|consen  480 SNYISAR-------AQRSLALLILSNKDFSEADKHLERSLEIN--PLQLGTWFGLGCAALQLEKEQAAVKAFHRCVTLEP  550 (777)
T ss_pred             hhhhhHH-------HHHhhccccccchhHHHHHHHHHHHhhcC--ccchhHHHhccHHHHHHhhhHHHHHHHHHHhhcCC
Confidence            8776432       11122222344789999999999888876  56677888888888899999999999999887642


Q ss_pred             CCCHHhHHHHHHHHHccCcHHHHHHHHHHHHHcCCCCcHhhHHHHHHHHhhchhHHHHHHHHHHhhhcC
Q 021791          222 GLDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDEES  290 (307)
Q Consensus       222 ~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~  290 (307)
                      . +...||.+-.+|.+.|+-.+|...+.+..+.+ .-+-..|...+....+.|.+++|.+.+.++....
T Consensus       551 d-~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn-~~~w~iWENymlvsvdvge~eda~~A~~rll~~~  617 (777)
T KOG1128|consen  551 D-NAEAWNNLSTAYIRLKKKKRAFRKLKEALKCN-YQHWQIWENYMLVSVDVGEFEDAIKAYHRLLDLR  617 (777)
T ss_pred             C-chhhhhhhhHHHHHHhhhHHHHHHHHHHhhcC-CCCCeeeechhhhhhhcccHHHHHHHHHHHHHhh
Confidence            2 56789999999999999999999999999887 4455567777777889999999999998875543

>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional

Probab=98.97  E-value=7e-07  Score=66.10  Aligned_cols=156  Identities=15%  Similarity=0.186  Sum_probs=118.8

Q ss_pred             HHHHHhcCCchhHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHhcCCCh
Q 021791           91 LHVYSRAHKPQLSLDKLNFMKEKGICPTVATYTSVVKCLCSCGRIEDAEELLGEMVRNGVSPSAETYNCFFKEYRGRKDA  170 (307)
Q Consensus        91 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~  170 (307)
                      +..|...|+++.+....+.+..    |.        ..+...++.+++...++.....+.. +...|..+...|...|++
T Consensus        23 ~~~Y~~~g~~~~v~~~~~~~~~----~~--------~~~~~~~~~~~~i~~l~~~L~~~P~-~~~~w~~Lg~~~~~~g~~   89 (198)
T PRK10370         23 VGSYLLSPKWQAVRAEYQRLAD----PL--------HQFASQQTPEAQLQALQDKIRANPQ-NSEQWALLGEYYLWRNDY   89 (198)
T ss_pred             HHHHHHcchHHHHHHHHHHHhC----cc--------ccccCchhHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHCCCH
Confidence            3467788888876544422211    11        1222366778888888888776544 888999999999999999


Q ss_pred             hHHHHHHHHHhhcCCCCccHHHHHHHHHHH-HhcCc--HHHHHHHHHHHhhCCCCCCHHhHHHHHHHHHccCcHHHHHHH
Q 021791          171 NGAMKLYRQMKEDDLCVPNIHTYNILIGMF-MALNR--MDMVREIWNHVKGSELGLDLDSYTMLIHGLCEKQKWKEACQY  247 (307)
Q Consensus       171 ~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~--~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~  247 (307)
                      ++|...+++.....  +.+...+..+..++ ...|+  .++|.+++++..+.+.. +..++..+...+...|++++|+..
T Consensus        90 ~~A~~a~~~Al~l~--P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~-~~~al~~LA~~~~~~g~~~~Ai~~  166 (198)
T PRK10370         90 DNALLAYRQALQLR--GENAELYAALATVLYYQAGQHMTPQTREMIDKALALDAN-EVTALMLLASDAFMQADYAQAIEL  166 (198)
T ss_pred             HHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCC-ChhHHHHHHHHHHHcCCHHHHHHH
Confidence            99999999999886  56788888888864 67677  59999999999988644 778888888999999999999999


Q ss_pred             HHHHHHcCCCCcHhhH
Q 021791          248 FVEMIEKGLLPQKVTF  263 (307)
Q Consensus       248 ~~~~~~~~~~p~~~~~  263 (307)
                      |+++++. .+|+..-+
T Consensus       167 ~~~aL~l-~~~~~~r~  181 (198)
T PRK10370        167 WQKVLDL-NSPRVNRT  181 (198)
T ss_pred             HHHHHhh-CCCCccHH
Confidence            9999886 35555443

>PLN02789 farnesyltranstransferase

Probab=98.94  E-value=3.4e-06  Score=67.10  Aligned_cols=218  Identities=10%  Similarity=-0.010  Sum_probs=159.6

Q ss_pred             HHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcC-CchhHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCCh--HHH
Q 021791           62 EKTIRNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAH-KPQLSLDKLNFMKEKGICPTVATYTSVVKCLCSCGRI--EDA  138 (307)
Q Consensus        62 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~--~~a  138 (307)
                      .+..++|+.+.+++++.. +-+..+|+.--.++...| ++++++..++.+.+...+ +..+|+.....+.+.|+.  +++
T Consensus        50 ~e~serAL~lt~~aI~ln-P~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npk-nyqaW~~R~~~l~~l~~~~~~~e  127 (320)
T PLN02789         50 DERSPRALDLTADVIRLN-PGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPK-NYQIWHHRRWLAEKLGPDAANKE  127 (320)
T ss_pred             CCCCHHHHHHHHHHHHHC-chhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCc-chHHhHHHHHHHHHcCchhhHHH
Confidence            556688999999888763 224456776666777777 579999999999887654 666777665556666653  678


Q ss_pred             HHHHHHHHhCCCCCCHhhHHHHHHHHhcCCChhHHHHHHHHHhhcCCCCccHHHHHHHHHHHHhc---CcH----HHHHH
Q 021791          139 EELLGEMVRNGVSPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDDLCVPNIHTYNILIGMFMAL---NRM----DMVRE  211 (307)
Q Consensus       139 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---~~~----~~a~~  211 (307)
                      ...++++.+.+.+ +..+|+....++...|+++++++.+.++.+.+  +.|..+|+.....+.+.   |..    +....
T Consensus       128 l~~~~kal~~dpk-Ny~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d--~~N~sAW~~R~~vl~~~~~l~~~~~~~e~el~  204 (320)
T PLN02789        128 LEFTRKILSLDAK-NYHAWSHRQWVLRTLGGWEDELEYCHQLLEED--VRNNSAWNQRYFVITRSPLLGGLEAMRDSELK  204 (320)
T ss_pred             HHHHHHHHHhCcc-cHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHC--CCchhHHHHHHHHHHhccccccccccHHHHHH
Confidence            8899899887665 88899998889999999999999999999987  56777887776666554   222    45666


Q ss_pred             HHHHHhhCCCCCCHHhHHHHHHHHHcc----CcHHHHHHHHHHHHHcCCCCcHhhHHHHHHHHhhch-------------
Q 021791          212 IWNHVKGSELGLDLDSYTMLIHGLCEK----QKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQSD-------------  274 (307)
Q Consensus       212 ~~~~~~~~~~~~~~~~~~~li~~~~~~----g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g-------------  274 (307)
                      ....+...... |...|+.+...+...    ++..+|...+.+..+.+ ..++.....|+..|....             
T Consensus       205 y~~~aI~~~P~-N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~-~~s~~al~~l~d~~~~~~~~~~~~~~~~~~~  282 (320)
T PLN02789        205 YTIDAILANPR-NESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKD-SNHVFALSDLLDLLCEGLQPTAEFRDTVDTL  282 (320)
T ss_pred             HHHHHHHhCCC-CcCHHHHHHHHHhcCCcccccchhHHHHHHHhhccc-CCcHHHHHHHHHHHHhhhccchhhhhhhhcc
Confidence            66666665433 677888887777763    34567888888877643 345667788888887532             


Q ss_pred             -----hHHHHHHHHHHh
Q 021791          275 -----MLRTWRRLKKKL  286 (307)
Q Consensus       275 -----~~~~a~~~~~~~  286 (307)
                           ..++|..++..+
T Consensus       283 ~~~~~~~~~a~~~~~~l  299 (320)
T PLN02789        283 AEELSDSTLAQAVCSEL  299 (320)
T ss_pred             ccccccHHHHHHHHHHH
Confidence                 346788888887

>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO

Probab=98.92  E-value=4.6e-07  Score=69.55  Aligned_cols=188  Identities=7%  Similarity=-0.015  Sum_probs=120.9

Q ss_pred             CCHHHHHHHHHHHHhcCCchhHHHHHHHHHHcCCC-C-chhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCH--hhH
Q 021791           82 PDVTSFSIVLHVYSRAHKPQLSLDKLNFMKEKGIC-P-TVATYTSVVKCLCSCGRIEDAEELLGEMVRNGVSPSA--ETY  157 (307)
Q Consensus        82 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~-~-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~  157 (307)
                      .....+..+...+...|+++.|...++++...... | ...++..+..++...|++++|...++++.+.......  .++
T Consensus        31 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~  110 (235)
T TIGR03302        31 WPAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYAY  110 (235)
T ss_pred             CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHHH
Confidence            35667777777888888888888888888765321 1 1245677778888888888888888888775432111  134


Q ss_pred             HHHHHHHhcC--------CChhHHHHHHHHHhhcCCCCccHHHHHHHHHHHHhcCcHHHHHHHHHHHhhCCCCCCHHhHH
Q 021791          158 NCFFKEYRGR--------KDANGAMKLYRQMKEDDLCVPNIHTYNILIGMFMALNRMDMVREIWNHVKGSELGLDLDSYT  229 (307)
Q Consensus       158 ~~l~~~~~~~--------~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~  229 (307)
                      ..+..++...        |++++|.+.++.+....  +.+...+..+.....    ....      .        .....
T Consensus       111 ~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--p~~~~~~~a~~~~~~----~~~~------~--------~~~~~  170 (235)
T TIGR03302       111 YLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRY--PNSEYAPDAKKRMDY----LRNR------L--------AGKEL  170 (235)
T ss_pred             HHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHC--CCChhHHHHHHHHHH----HHHH------H--------HHHHH
Confidence            4445555543        66777888888887764  223233322221111    0000      0        00112


Q ss_pred             HHHHHHHccCcHHHHHHHHHHHHHcC--CCCcHhhHHHHHHHHhhchhHHHHHHHHHHhhhc
Q 021791          230 MLIHGLCEKQKWKEACQYFVEMIEKG--LLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDEE  289 (307)
Q Consensus       230 ~li~~~~~~g~~~~a~~~~~~~~~~~--~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~  289 (307)
                      .+...+.+.|++.+|...+++.++..  -+.....+..+..++...|+.++|..+++.+...
T Consensus       171 ~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~  232 (235)
T TIGR03302       171 YVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGAN  232 (235)
T ss_pred             HHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence            45566788899999999999988762  1123457788889999999999999988887654

Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).

>PF12854 PPR_1: PPR repeat

Probab=98.90  E-value=2.7e-09  Score=53.93  Aligned_cols=31  Identities=39%  Similarity=0.760  Sum_probs=13.5

Q ss_pred             CCCchhhHHHHHHHHHhcCChHHHHHHHHHH
Q 021791          115 ICPTVATYTSVVKCLCSCGRIEDAEELLGEM  145 (307)
Q Consensus       115 ~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~  145 (307)
                      +.||..||++||++|++.|++++|.++|++|
T Consensus         3 ~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M   33 (34)
T PF12854_consen    3 CEPDVVTYNTLIDGYCKAGRVDEAFELFDEM   33 (34)
T ss_pred             CCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence            3444444444444444444444444444443

>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]

Probab=98.89  E-value=3.3e-07  Score=77.25  Aligned_cols=214  Identities=9%  Similarity=0.068  Sum_probs=165.1

Q ss_pred             HHHHHHHhcCchhhHHHHHHHHHhcCCCCcHHHHHHHHHHHHhhCCCCcchhhHHHHHHHHHHHHHHHhcCCCCCHHHHH
Q 021791            9 SLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPNERFEKTIRNAEKVFDEMRVRGIEPDVTSFS   88 (307)
Q Consensus         9 ~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~   88 (307)
                      .+...+...|-...|..+|+++.         .|..++.+|..          .|+..+|..+..+..+.  +||...|.
T Consensus       403 ~laell~slGitksAl~I~Erle---------mw~~vi~CY~~----------lg~~~kaeei~~q~lek--~~d~~lyc  461 (777)
T KOG1128|consen  403 LLAELLLSLGITKSALVIFERLE---------MWDPVILCYLL----------LGQHGKAEEINRQELEK--DPDPRLYC  461 (777)
T ss_pred             HHHHHHHHcchHHHHHHHHHhHH---------HHHHHHHHHHH----------hcccchHHHHHHHHhcC--CCcchhHH
Confidence            45667778888888988888764         46667778888          66677888888777774  78888888


Q ss_pred             HHHHHHHhcCCchhHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHhcCC
Q 021791           89 IVLHVYSRAHKPQLSLDKLNFMKEKGICPTVATYTSVVKCLCSCGRIEDAEELLGEMVRNGVSPSAETYNCFFKEYRGRK  168 (307)
Q Consensus        89 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~  168 (307)
                      .+.+......-+++|.++.+.....       +-..+.....+.++++++.+.|+.-.+.+. ....+|-.+.-+..+.+
T Consensus       462 ~LGDv~~d~s~yEkawElsn~~sar-------A~r~~~~~~~~~~~fs~~~~hle~sl~~np-lq~~~wf~~G~~ALqle  533 (777)
T KOG1128|consen  462 LLGDVLHDPSLYEKAWELSNYISAR-------AQRSLALLILSNKDFSEADKHLERSLEINP-LQLGTWFGLGCAALQLE  533 (777)
T ss_pred             HhhhhccChHHHHHHHHHhhhhhHH-------HHHhhccccccchhHHHHHHHHHHHhhcCc-cchhHHHhccHHHHHHh
Confidence            8888877777778888887665332       222222333447889999999988776543 25678888888888889


Q ss_pred             ChhHHHHHHHHHhhcCCCCccHHHHHHHHHHHHhcCcHHHHHHHHHHHhhCCCCCCHHhHHHHHHHHHccCcHHHHHHHH
Q 021791          169 DANGAMKLYRQMKEDDLCVPNIHTYNILIGMFMALNRMDMVREIWNHVKGSELGLDLDSYTMLIHGLCEKQKWKEACQYF  248 (307)
Q Consensus       169 ~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~  248 (307)
                      ++..+.+.|.......  +.+...|+.+-.+|.+.++-.+|...+.+..+.+ .-+...|...+-...+-|.+++|++.+
T Consensus       534 k~q~av~aF~rcvtL~--Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn-~~~w~iWENymlvsvdvge~eda~~A~  610 (777)
T KOG1128|consen  534 KEQAAVKAFHRCVTLE--PDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCN-YQHWQIWENYMLVSVDVGEFEDAIKAY  610 (777)
T ss_pred             hhHHHHHHHHHHhhcC--CCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcC-CCCCeeeechhhhhhhcccHHHHHHHH
Confidence            9999999998887765  5677889999999999999999999999998887 336667777788888899999999999


Q ss_pred             HHHHHc
Q 021791          249 VEMIEK  254 (307)
Q Consensus       249 ~~~~~~  254 (307)
                      .++.+.
T Consensus       611 ~rll~~  616 (777)
T KOG1128|consen  611 HRLLDL  616 (777)
T ss_pred             HHHHHh
Confidence            888654

>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]

Probab=98.89  E-value=3.6e-06  Score=76.07  Aligned_cols=231  Identities=15%  Similarity=0.108  Sum_probs=177.4

Q ss_pred             cHHHHHHHHHHHHhcCchhhHHHHHHHHHhc-CCCCcHH---HHHHHHHHHHhhCCCCcchhhHHHHHHHHHHHHHHHhc
Q 021791            3 NVKMYTSLIYGWCKINRIDMAERFLGEMIER-GVEPNVV---TYNVLLNGVCRRASLHPNERFEKTIRNAEKVFDEMRVR   78 (307)
Q Consensus         3 ~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~-~~~p~~~---~~~~ll~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~   78 (307)
                      +...|-..|....+.++.++|.+++++.+.. ++.-...   .|.+++..-..          .|.-+...++|+++.+.
T Consensus      1457 SSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~----------yG~eesl~kVFeRAcqy 1526 (1710)
T KOG1070|consen 1457 SSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENA----------YGTEESLKKVFERACQY 1526 (1710)
T ss_pred             cchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHh----------hCcHHHHHHHHHHHHHh
Confidence            3567888899999999999999999999875 3322222   34444443333          45557788899998875


Q ss_pred             CCCCCHHHHHHHHHHHHhcCCchhHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCC-CHhhH
Q 021791           79 GIEPDVTSFSIVLHVYSRAHKPQLSLDKLNFMKEKGICPTVATYTSVVKCLCSCGRIEDAEELLGEMVRNGVSP-SAETY  157 (307)
Q Consensus        79 ~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~  157 (307)
                        .-.-.+|..|...|.+.+..++|-++++.|.+.= .-....|...+..+.+.++-+.|.+++.+..+.-++- .....
T Consensus      1527 --cd~~~V~~~L~~iy~k~ek~~~A~ell~~m~KKF-~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~I 1603 (1710)
T KOG1070|consen 1527 --CDAYTVHLKLLGIYEKSEKNDEADELLRLMLKKF-GQTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFI 1603 (1710)
T ss_pred             --cchHHHHHHHHHHHHHhhcchhHHHHHHHHHHHh-cchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHH
Confidence              2234578899999999999999999999998762 2477899999999999999999999999988753221 23455


Q ss_pred             HHHHHHHhcCCChhHHHHHHHHHhhcCCCCccHHHHHHHHHHHHhcCcHHHHHHHHHHHhhCCCCCCH--HhHHHHHHHH
Q 021791          158 NCFFKEYRGRKDANGAMKLYRQMKEDDLCVPNIHTYNILIGMFMALNRMDMVREIWNHVKGSELGLDL--DSYTMLIHGL  235 (307)
Q Consensus       158 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~li~~~  235 (307)
                      ...++.-.+.|+.+.+..+|+......  |--...|+..++.-.++|+.+.++.+|+++...++.|-.  ..|...++.=
T Consensus      1604 skfAqLEFk~GDaeRGRtlfEgll~ay--PKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~kkmKfffKkwLeyE 1681 (1710)
T KOG1070|consen 1604 SKFAQLEFKYGDAERGRTLFEGLLSAY--PKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIKKMKFFFKKWLEYE 1681 (1710)
T ss_pred             HHHHHHHhhcCCchhhHHHHHHHHhhC--ccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChhHhHHHHHHHHHHH
Confidence            666777789999999999999999885  556789999999999999999999999999998876543  2456666655


Q ss_pred             HccCcHHHHHHHH
Q 021791          236 CEKQKWKEACQYF  248 (307)
Q Consensus       236 ~~~g~~~~a~~~~  248 (307)
                      -+.|+-+.+..+=
T Consensus      1682 k~~Gde~~vE~VK 1694 (1710)
T KOG1070|consen 1682 KSHGDEKNVEYVK 1694 (1710)
T ss_pred             HhcCchhhHHHHH
Confidence            5566655444443

>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO

Probab=98.88  E-value=1.2e-06  Score=67.34  Aligned_cols=172  Identities=8%  Similarity=-0.065  Sum_probs=118.1

Q ss_pred             HHHHHHHHHHHHHHHhcCCCCCH---HHHHHHHHHHHhcCCchhHHHHHHHHHHcCCCCch--hhHHHHHHHHHhc----
Q 021791           62 EKTIRNAEKVFDEMRVRGIEPDV---TSFSIVLHVYSRAHKPQLSLDKLNFMKEKGICPTV--ATYTSVVKCLCSC----  132 (307)
Q Consensus        62 ~~~~~~a~~~~~~~~~~~~~~~~---~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~ll~~~~~~----  132 (307)
                      .+++++|...|+++.... +.+.   ..+..+..++...|++++|...++.+.+.......  .++..+..++...    
T Consensus        46 ~~~~~~A~~~~~~~~~~~-p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~g~~~~~~~~~~  124 (235)
T TIGR03302        46 SGDYTEAIKYFEALESRY-PFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYAYYLRGLSNYNQIDRV  124 (235)
T ss_pred             cCCHHHHHHHHHHHHHhC-CCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHHHHHHHHHHHHhcccc
Confidence            578899999999988763 2222   46778889999999999999999999887432111  2455566666654    


Q ss_pred             ----CChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHhcCCChhHHHHHHHHHhhcCCCCccHHHHHHHHHHHHhcCcHHH
Q 021791          133 ----GRIEDAEELLGEMVRNGVSPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDDLCVPNIHTYNILIGMFMALNRMDM  208 (307)
Q Consensus       133 ----~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  208 (307)
                          |+.++|.+.++.+....+. +...+..+....              .+...    . ......+...+.+.|++++
T Consensus       125 ~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~a~~~~~--------------~~~~~----~-~~~~~~~a~~~~~~g~~~~  184 (235)
T TIGR03302       125 DRDQTAAREAFEAFQELIRRYPN-SEYAPDAKKRMD--------------YLRNR----L-AGKELYVARFYLKRGAYVA  184 (235)
T ss_pred             cCCHHHHHHHHHHHHHHHHHCCC-ChhHHHHHHHHH--------------HHHHH----H-HHHHHHHHHHHHHcCChHH
Confidence                7889999999999876332 222332222111              00000    0 0112245667888999999


Q ss_pred             HHHHHHHHhhCCC--CCCHHhHHHHHHHHHccCcHHHHHHHHHHHHHc
Q 021791          209 VREIWNHVKGSEL--GLDLDSYTMLIHGLCEKQKWKEACQYFVEMIEK  254 (307)
Q Consensus       209 a~~~~~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~  254 (307)
                      |...++.......  +.....+..+..++...|++++|..+++.+...
T Consensus       185 A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~  232 (235)
T TIGR03302       185 AINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGAN  232 (235)
T ss_pred             HHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence            9999999887532  123567889999999999999999998888754

Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).

>PF12854 PPR_1: PPR repeat

Probab=98.88  E-value=3.8e-09  Score=53.39  Aligned_cols=32  Identities=34%  Similarity=0.555  Sum_probs=15.9

Q ss_pred             CCCCCHHhHHHHHHHHHccCcHHHHHHHHHHH
Q 021791          220 ELGLDLDSYTMLIHGLCEKQKWKEACQYFVEM  251 (307)
Q Consensus       220 ~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~  251 (307)
                      |+.||..+|+.+|.+|++.|++++|.++|++|
T Consensus         2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M   33 (34)
T PF12854_consen    2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEM   33 (34)
T ss_pred             CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence            34445555555555555555555555555444

>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]

Probab=98.86  E-value=2.1e-06  Score=63.90  Aligned_cols=155  Identities=15%  Similarity=-0.004  Sum_probs=70.5

Q ss_pred             HHHHHHhcCCchhHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHhcCCC
Q 021791           90 VLHVYSRAHKPQLSLDKLNFMKEKGICPTVATYTSVVKCLCSCGRIEDAEELLGEMVRNGVSPSAETYNCFFKEYRGRKD  169 (307)
Q Consensus        90 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~  169 (307)
                      +-..+...|+-+....+........ ..|.......+....+.|++..|...+.+..... ++|..+|+.+.-+|.+.|+
T Consensus        72 ~a~a~~~~G~a~~~l~~~~~~~~~~-~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~-p~d~~~~~~lgaaldq~Gr  149 (257)
T COG5010          72 LATALYLRGDADSSLAVLQKSAIAY-PKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLA-PTDWEAWNLLGAALDQLGR  149 (257)
T ss_pred             HHHHHHhcccccchHHHHhhhhccC-cccHHHHHHHHHHHHHhcchHHHHHHHHHHhccC-CCChhhhhHHHHHHHHccC
Confidence            3334444444444444443332221 1133333334444555555555555555544432 2344555555555555555


Q ss_pred             hhHHHHHHHHHhhcCCCCccHHHHHHHHHHHHhcCcHHHHHHHHHHHhhCCCCCCHHhHHHHHHHHHccCcHHHHHHHHH
Q 021791          170 ANGAMKLYRQMKEDDLCVPNIHTYNILIGMFMALNRMDMVREIWNHVKGSELGLDLDSYTMLIHGLCEKQKWKEACQYFV  249 (307)
Q Consensus       170 ~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~  249 (307)
                      +++|..-|.+..+..  +-+...++.+.-.+.-.|+.+.|..++......+.. |...-..+.......|++++|..+..
T Consensus       150 ~~~Ar~ay~qAl~L~--~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~a-d~~v~~NLAl~~~~~g~~~~A~~i~~  226 (257)
T COG5010         150 FDEARRAYRQALELA--PNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSPAA-DSRVRQNLALVVGLQGDFREAEDIAV  226 (257)
T ss_pred             hhHHHHHHHHHHHhc--cCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCCC-chHHHHHHHHHHhhcCChHHHHhhcc
Confidence            555555555554443  233344444444444455555555555544443221 44444444444455555555554443

>KOG2047 consensus mRNA splicing factor [RNA processing and modification]

Probab=98.85  E-value=1.3e-05  Score=67.14  Aligned_cols=276  Identities=12%  Similarity=0.174  Sum_probs=148.7

Q ss_pred             HHHHHHHHHHHhcCchhhHHHHHHHHHhcCCCCcHHHHHHHHHHHHhhCCC------------CcchhhHHHHHHHHHHH
Q 021791            5 KMYTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASL------------HPNERFEKTIRNAEKVF   72 (307)
Q Consensus         5 ~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~------------~~~~~~~~~~~~a~~~~   72 (307)
                      ..|..|.+.|.+.|++++|.++|++....  ..++.-|..+..+|+.-...            .......-+++-....|
T Consensus       249 ~Lw~SLAdYYIr~g~~ekarDvyeeai~~--v~tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~dl~~~~a~~  326 (835)
T KOG2047|consen  249 FLWCSLADYYIRSGLFEKARDVYEEAIQT--VMTVRDFTQIFDAYAQFEESCVAAKMELADEESGNEEDDVDLELHMARF  326 (835)
T ss_pred             HHHHHHHHHHHHhhhhHHHHHHHHHHHHh--heehhhHHHHHHHHHHHHHHHHHHHHhhhhhcccChhhhhhHHHHHHHH
Confidence            46899999999999999999999998876  34666677777776652110            00000122233333344


Q ss_pred             HHHHhcCC-----------CCCHHHHHHHHHHHHhcCCchhHHHHHHHHHHcCCCC------chhhHHHHHHHHHhcCCh
Q 021791           73 DEMRVRGI-----------EPDVTSFSIVLHVYSRAHKPQLSLDKLNFMKEKGICP------TVATYTSVVKCLCSCGRI  135 (307)
Q Consensus        73 ~~~~~~~~-----------~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~------~~~~~~~ll~~~~~~~~~  135 (307)
                      +.+.....           +-++..|..-..  ...|+..+....|.+..+. +.|      -...|..+...|-..|++
T Consensus       327 e~lm~rr~~~lNsVlLRQn~~nV~eW~kRV~--l~e~~~~~~i~tyteAv~~-vdP~ka~Gs~~~Lw~~faklYe~~~~l  403 (835)
T KOG2047|consen  327 ESLMNRRPLLLNSVLLRQNPHNVEEWHKRVK--LYEGNAAEQINTYTEAVKT-VDPKKAVGSPGTLWVEFAKLYENNGDL  403 (835)
T ss_pred             HHHHhccchHHHHHHHhcCCccHHHHHhhhh--hhcCChHHHHHHHHHHHHc-cCcccCCCChhhHHHHHHHHHHhcCcH
Confidence            44333210           112222222221  2245556666666666543 111      123456666677777777


Q ss_pred             HHHHHHHHHHHhCCCCCC---HhhHHHHHHHHhcCCChhHHHHHHHHHhhcCC----------CCc------cHHHHHHH
Q 021791          136 EDAEELLGEMVRNGVSPS---AETYNCFFKEYRGRKDANGAMKLYRQMKEDDL----------CVP------NIHTYNIL  196 (307)
Q Consensus       136 ~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~----------~~~------~~~~~~~l  196 (307)
                      +.|..+|++..+...+--   ..+|......-.++.+++.|+++.+.......          .++      +...|...
T Consensus       404 ~~aRvifeka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y  483 (835)
T KOG2047|consen  404 DDARVIFEKATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMY  483 (835)
T ss_pred             HHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHH
Confidence            777777777665433211   23555555555666666666666655432211          011      22344444


Q ss_pred             HHHHHhcCcHHHHHHHHHHHhhCCC----------------------------------CCCH-HhHHHHHHHHHc---c
Q 021791          197 IGMFMALNRMDMVREIWNHVKGSEL----------------------------------GLDL-DSYTMLIHGLCE---K  238 (307)
Q Consensus       197 ~~~~~~~~~~~~a~~~~~~~~~~~~----------------------------------~~~~-~~~~~li~~~~~---~  238 (307)
                      ++.--..|-++....+++.+....+                                  .|+. ..|+..+.-+.+   .
T Consensus       484 ~DleEs~gtfestk~vYdriidLriaTPqii~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg  563 (835)
T KOG2047|consen  484 ADLEESLGTFESTKAVYDRIIDLRIATPQIIINYAMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGG  563 (835)
T ss_pred             HHHHHHhccHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcC
Confidence            5554555555555555555543322                                  1222 345555555443   2


Q ss_pred             CcHHHHHHHHHHHHHcCCCCcHh-hHHHHH-HHHhhchhHHHHHHHHHHh
Q 021791          239 QKWKEACQYFVEMIEKGLLPQKV-TFETLY-RGLIQSDMLRTWRRLKKKL  286 (307)
Q Consensus       239 g~~~~a~~~~~~~~~~~~~p~~~-~~~~l~-~~~~~~g~~~~a~~~~~~~  286 (307)
                      ...+.|..+|++.++ |.+|... |+-.+. ..=.+.|....|..++++.
T Consensus       564 ~klEraRdLFEqaL~-~Cpp~~aKtiyLlYA~lEEe~GLar~amsiyera  612 (835)
T KOG2047|consen  564 TKLERARDLFEQALD-GCPPEHAKTIYLLYAKLEEEHGLARHAMSIYERA  612 (835)
T ss_pred             CCHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence            357888888888888 5655443 222222 2223457777788887774

>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional

Probab=98.84  E-value=6.4e-06  Score=72.18  Aligned_cols=133  Identities=7%  Similarity=0.035  Sum_probs=61.7

Q ss_pred             chhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHhcCCChhHHHHHHHHHhhcCCCCccHHHHHHHH
Q 021791          118 TVATYTSVVKCLCSCGRIEDAEELLGEMVRNGVSPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDDLCVPNIHTYNILI  197 (307)
Q Consensus       118 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~  197 (307)
                      +...+..|.....+.|..++|+.+++...+..+. +......+...+.+.+++++|...+++.....  +.+......+.
T Consensus        85 ~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd-~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~--p~~~~~~~~~a  161 (694)
T PRK15179         85 TELFQVLVARALEAAHRSDEGLAVWRGIHQRFPD-SSEAFILMLRGVKRQQGIEAGRAEIELYFSGG--SSSAREILLEA  161 (694)
T ss_pred             cHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCC-cHHHHHHHHHHHHHhccHHHHHHHHHHHhhcC--CCCHHHHHHHH
Confidence            3444444445555555555555555554443211 23334444444455555555555555554443  33344444444


Q ss_pred             HHHHhcCcHHHHHHHHHHHhhCCCCCCHHhHHHHHHHHHccCcHHHHHHHHHHHHHc
Q 021791          198 GMFMALNRMDMVREIWNHVKGSELGLDLDSYTMLIHGLCEKQKWKEACQYFVEMIEK  254 (307)
Q Consensus       198 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~  254 (307)
                      .++.+.|++++|..+|+++...+. -+..++..+..++-..|+.++|...|++..+.
T Consensus       162 ~~l~~~g~~~~A~~~y~~~~~~~p-~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~  217 (694)
T PRK15179        162 KSWDEIGQSEQADACFERLSRQHP-EFENGYVGWAQSLTRRGALWRARDVLQAGLDA  217 (694)
T ss_pred             HHHHHhcchHHHHHHHHHHHhcCC-CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence            444455555555555555444211 12444444444444555555555555554443

>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional

Probab=98.80  E-value=3.3e-06  Score=74.90  Aligned_cols=212  Identities=12%  Similarity=0.078  Sum_probs=120.9

Q ss_pred             cHHHHHHHHHHHHhcCchhhHHHHHHHHHhcCCCCcHHHHHHHHH-HHHhhCCCCcchhh--------HHHHHHHHHHHH
Q 021791            3 NVKMYTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLN-GVCRRASLHPNERF--------EKTIRNAEKVFD   73 (307)
Q Consensus         3 ~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~-~~~~~~~~~~~~~~--------~~~~~~a~~~~~   73 (307)
                      +...+..|+..+...+++++|.++.+...+.  .|+...+-.+.. .+.+.++...+..+        ..++.-...+..
T Consensus        30 n~~a~~~Li~~~~~~~~~deai~i~~~~l~~--~P~~i~~yy~~G~l~~q~~~~~~~~lv~~l~~~~~~~~~~~ve~~~~  107 (906)
T PRK14720         30 KFKELDDLIDAYKSENLTDEAKDICEEHLKE--HKKSISALYISGILSLSRRPLNDSNLLNLIDSFSQNLKWAIVEHICD  107 (906)
T ss_pred             hHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh--CCcceehHHHHHHHHHhhcchhhhhhhhhhhhcccccchhHHHHHHH
Confidence            5678889999999999999999999977665  455443332222 34442222111110        111222222222


Q ss_pred             HHHhcCCCCCHHHHHHHHHHHHhcCCchhHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCC
Q 021791           74 EMRVRGIEPDVTSFSIVLHVYSRAHKPQLSLDKLNFMKEKGICPTVATYTSVVKCLCSCGRIEDAEELLGEMVRNGVSPS  153 (307)
Q Consensus        74 ~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~  153 (307)
                      .+...  .-+...+-.+..+|-+.|+.+++..+|+++.+.... |+.+.|.+...|... ++++|++++.+....     
T Consensus       108 ~i~~~--~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~-n~~aLNn~AY~~ae~-dL~KA~~m~~KAV~~-----  178 (906)
T PRK14720        108 KILLY--GENKLALRTLAEAYAKLNENKKLKGVWERLVKADRD-NPEIVKKLATSYEEE-DKEKAITYLKKAIYR-----  178 (906)
T ss_pred             HHHhh--hhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHh-hHHHHHHHHHHHHHH-----
Confidence            23222  123345666777777778888888888888877633 777778888888777 888888777776553     


Q ss_pred             HhhHHHHHHHHhcCCChhHHHHHHHHHhhcC------------------CCCccHHHHHHHHHHHHhcCcHHHHHHHHHH
Q 021791          154 AETYNCFFKEYRGRKDANGAMKLYRQMKEDD------------------LCVPNIHTYNILIGMFMALNRMDMVREIWNH  215 (307)
Q Consensus       154 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~------------------~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~  215 (307)
                                +...+++..+..+|.++....                  ...--..++-.+...|-..++++++..+++.
T Consensus       179 ----------~i~~kq~~~~~e~W~k~~~~~~~d~d~f~~i~~ki~~~~~~~~~~~~~~~l~~~y~~~~~~~~~i~iLK~  248 (906)
T PRK14720        179 ----------FIKKKQYVGIEEIWSKLVHYNSDDFDFFLRIERKVLGHREFTRLVGLLEDLYEPYKALEDWDEVIYILKK  248 (906)
T ss_pred             ----------HHhhhcchHHHHHHHHHHhcCcccchHHHHHHHHHHhhhccchhHHHHHHHHHHHhhhhhhhHHHHHHHH
Confidence                      333334444444444444332                  1122223334444555555666666666666


Q ss_pred             HhhCCCCCCHHhHHHHHHHHH
Q 021791          216 VKGSELGLDLDSYTMLIHGLC  236 (307)
Q Consensus       216 ~~~~~~~~~~~~~~~li~~~~  236 (307)
                      +.+.... |.....-++.+|.
T Consensus       249 iL~~~~~-n~~a~~~l~~~y~  268 (906)
T PRK14720        249 ILEHDNK-NNKAREELIRFYK  268 (906)
T ss_pred             HHhcCCc-chhhHHHHHHHHH
Confidence            6655432 4445555555554

>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional

Probab=98.80  E-value=3.1e-06  Score=62.68  Aligned_cols=118  Identities=8%  Similarity=0.096  Sum_probs=62.5

Q ss_pred             HHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCchhHHHHHHHHHHcCCCCchhhHHHHHHHH-HhcCC--hHHHHH
Q 021791           64 TIRNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHKPQLSLDKLNFMKEKGICPTVATYTSVVKCL-CSCGR--IEDAEE  140 (307)
Q Consensus        64 ~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~-~~~~~--~~~a~~  140 (307)
                      +.+++...++...+.. +.|...|..+...|...|+++.|...|+...+.... +...+..+..++ ...|+  .++|.+
T Consensus        54 ~~~~~i~~l~~~L~~~-P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~-~~~~~~~lA~aL~~~~g~~~~~~A~~  131 (198)
T PRK10370         54 TPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWRNDYDNALLAYRQALQLRGE-NAELYAALATVLYYQAGQHMTPQTRE  131 (198)
T ss_pred             hHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcCCCCcHHHHH
Confidence            3344444444444432 335555556666666666666666666655555432 444555555442 44444  355666


Q ss_pred             HHHHHHhCCCCCCHhhHHHHHHHHhcCCChhHHHHHHHHHhhcC
Q 021791          141 LLGEMVRNGVSPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDD  184 (307)
Q Consensus       141 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~  184 (307)
                      ++++..+.+.. +..++..+...+...|++++|...|+++.+..
T Consensus       132 ~l~~al~~dP~-~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l~  174 (198)
T PRK10370        132 MIDKALALDAN-EVTALMLLASDAFMQADYAQAIELWQKVLDLN  174 (198)
T ss_pred             HHHHHHHhCCC-ChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence            66665555433 44555555555555666666666666655554

>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]

Probab=98.80  E-value=7e-06  Score=61.16  Aligned_cols=162  Identities=11%  Similarity=0.042  Sum_probs=132.1

Q ss_pred             chhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHhcCCChhHHHHHHHHHhhcCCCCccHHHHHHHH
Q 021791          118 TVATYTSVVKCLCSCGRIEDAEELLGEMVRNGVSPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDDLCVPNIHTYNILI  197 (307)
Q Consensus       118 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~  197 (307)
                      |... ..+-..+...|+-+....+......... .|.......+....+.|++..|...+++.....  ++|..+|+.+.
T Consensus        66 d~~i-~~~a~a~~~~G~a~~~l~~~~~~~~~~~-~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~--p~d~~~~~~lg  141 (257)
T COG5010          66 DLSI-AKLATALYLRGDADSSLAVLQKSAIAYP-KDRELLAAQGKNQIRNGNFGEAVSVLRKAARLA--PTDWEAWNLLG  141 (257)
T ss_pred             hHHH-HHHHHHHHhcccccchHHHHhhhhccCc-ccHHHHHHHHHHHHHhcchHHHHHHHHHHhccC--CCChhhhhHHH
Confidence            4444 6677778888888888888877655433 366677778899999999999999999998886  89999999999


Q ss_pred             HHHHhcCcHHHHHHHHHHHhhCCCCCCHHhHHHHHHHHHccCcHHHHHHHHHHHHHcCCCCcHhhHHHHHHHHhhchhHH
Q 021791          198 GMFMALNRMDMVREIWNHVKGSELGLDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQSDMLR  277 (307)
Q Consensus       198 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~  277 (307)
                      -+|.+.|+.+.|..-+.+..+.... +...++.+.-.+.-.|+.+.|..++......+ .-|...-..+..+....|+++
T Consensus       142 aaldq~Gr~~~Ar~ay~qAl~L~~~-~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~-~ad~~v~~NLAl~~~~~g~~~  219 (257)
T COG5010         142 AALDQLGRFDEARRAYRQALELAPN-EPSIANNLGMSLLLRGDLEDAETLLLPAYLSP-AADSRVRQNLALVVGLQGDFR  219 (257)
T ss_pred             HHHHHccChhHHHHHHHHHHHhccC-CchhhhhHHHHHHHcCCHHHHHHHHHHHHhCC-CCchHHHHHHHHHHhhcCChH
Confidence            9999999999999999998886433 66778888888888999999999999888764 236667777888888999999


Q ss_pred             HHHHHHHH
Q 021791          278 TWRRLKKK  285 (307)
Q Consensus       278 ~a~~~~~~  285 (307)
                      +|+.+...
T Consensus       220 ~A~~i~~~  227 (257)
T COG5010         220 EAEDIAVQ  227 (257)
T ss_pred             HHHhhccc
Confidence            99887654

>KOG1125 consensus TPR repeat-containing protein [General function prediction only]

Probab=98.79  E-value=1e-06  Score=72.46  Aligned_cols=218  Identities=10%  Similarity=0.047  Sum_probs=165.1

Q ss_pred             HHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCchhHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCChHHHHHH
Q 021791           62 EKTIRNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHKPQLSLDKLNFMKEKGICPTVATYTSVVKCLCSCGRIEDAEEL  141 (307)
Q Consensus        62 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~  141 (307)
                      .|++.+|.-.|+..++.. +-+...|.-|...-...++-..|+..+.+..+.... +....-.|.-.|...|.-.+|...
T Consensus       298 nG~L~~A~LafEAAVkqd-P~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~-NleaLmaLAVSytNeg~q~~Al~~  375 (579)
T KOG1125|consen  298 NGDLSEAALAFEAAVKQD-PQHAEAWQKLGITQAENENEQNAISALRRCLELDPT-NLEALMALAVSYTNEGLQNQALKM  375 (579)
T ss_pred             cCCchHHHHHHHHHHhhC-hHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCc-cHHHHHHHHHHHhhhhhHHHHHHH
Confidence            566888888898888774 347788999998999999989999999999888644 677788888889999999999988


Q ss_pred             HHHHHhCCCC--------CCHhhHHHHHHHHhcCCChhHHHHHHHHHhhcCCCCccHHHHHHHHHHHHhcCcHHHHHHHH
Q 021791          142 LGEMVRNGVS--------PSAETYNCFFKEYRGRKDANGAMKLYRQMKEDDLCVPNIHTYNILIGMFMALNRMDMVREIW  213 (307)
Q Consensus       142 ~~~~~~~~~~--------~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~  213 (307)
                      ++.-+...++        ++...-..  ..+.....+....++|-++.......+|+.+...|.-.|--.|++++|...|
T Consensus       376 L~~Wi~~~p~y~~l~~a~~~~~~~~~--~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdraiDcf  453 (579)
T KOG1125|consen  376 LDKWIRNKPKYVHLVSAGENEDFENT--KSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAVDCF  453 (579)
T ss_pred             HHHHHHhCccchhccccCccccccCC--cCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHHHHHH
Confidence            8876554211        00000000  1222333445556666666555432578889999999999999999999999


Q ss_pred             HHHhhCCCCCCHHhHHHHHHHHHccCcHHHHHHHHHHHHHcCCCCcH-hhHHHHHHHHhhchhHHHHHHHHHHh
Q 021791          214 NHVKGSELGLDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQK-VTFETLYRGLIQSDMLRTWRRLKKKL  286 (307)
Q Consensus       214 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~a~~~~~~~  286 (307)
                      +........ |...||.|-..++...+.++|+..|++.++.  +|+- .+...|.-+|...|.+++|...|=..
T Consensus       454 ~~AL~v~Pn-d~~lWNRLGAtLAN~~~s~EAIsAY~rALqL--qP~yVR~RyNlgIS~mNlG~ykEA~~hlL~A  524 (579)
T KOG1125|consen  454 EAALQVKPN-DYLLWNRLGATLANGNRSEEAISAYNRALQL--QPGYVRVRYNLGISCMNLGAYKEAVKHLLEA  524 (579)
T ss_pred             HHHHhcCCc-hHHHHHHhhHHhcCCcccHHHHHHHHHHHhc--CCCeeeeehhhhhhhhhhhhHHHHHHHHHHH
Confidence            999987533 7888999999999999999999999999964  6764 35566777899999999998876543

>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.78  E-value=2.1e-05  Score=58.88  Aligned_cols=249  Identities=9%  Similarity=-0.010  Sum_probs=127.7

Q ss_pred             HHHHHhcCchhhHHHHHHHHHhcCCCCcHHHHHHHHHHHHhhCCCCcchhhHHHHHHHHHHHHHHHhcCCCCCHHHHHHH
Q 021791           11 IYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPNERFEKTIRNAEKVFDEMRVRGIEPDVTSFSIV   90 (307)
Q Consensus        11 i~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l   90 (307)
                      ++-+.-.|.+..++..-.......  -+...-..+-++|...|+...             ...+.... -.|....+..+
T Consensus        15 iRn~fY~Gnyq~~ine~~~~~~~~--~~~e~d~y~~raylAlg~~~~-------------~~~eI~~~-~~~~lqAvr~~   78 (299)
T KOG3081|consen   15 IRNYFYLGNYQQCINEAEKFSSSK--TDVELDVYMYRAYLALGQYQI-------------VISEIKEG-KATPLQAVRLL   78 (299)
T ss_pred             HHHHHHhhHHHHHHHHHHhhcccc--chhHHHHHHHHHHHHcccccc-------------cccccccc-cCChHHHHHHH
Confidence            344445677776666555443331  234444445556666443211             11122211 12333333333


Q ss_pred             HHHHHhcCCchh-HHHHHHHHHHcCCCCchhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHhcCCC
Q 021791           91 LHVYSRAHKPQL-SLDKLNFMKEKGICPTVATYTSVVKCLCSCGRIEDAEELLGEMVRNGVSPSAETYNCFFKEYRGRKD  169 (307)
Q Consensus        91 l~~~~~~~~~~~-a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~  169 (307)
                      ......-++.+. ..++.+.+.......+......-...|.+.|++++|++..+...      +......=+..+.+..+
T Consensus        79 a~~~~~e~~~~~~~~~l~E~~a~~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~~~------~lE~~Al~VqI~lk~~r  152 (299)
T KOG3081|consen   79 AEYLELESNKKSILASLYELVADSTDGSNLIDLLLAAIIYMHDGDFDEALKALHLGE------NLEAAALNVQILLKMHR  152 (299)
T ss_pred             HHHhhCcchhHHHHHHHHHHHHhhccchhHHHHHHhhHHhhcCCChHHHHHHHhccc------hHHHHHHHHHHHHHHHH
Confidence            333333333222 22333444443333333333344455667777777777665521      22333333444556666


Q ss_pred             hhHHHHHHHHHhhcCCCCccHHHHHHHHHHHHh----cCcHHHHHHHHHHHhhCCCCCCHHhHHHHHHHHHccCcHHHHH
Q 021791          170 ANGAMKLYRQMKEDDLCVPNIHTYNILIGMFMA----LNRMDMVREIWNHVKGSELGLDLDSYTMLIHGLCEKQKWKEAC  245 (307)
Q Consensus       170 ~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~  245 (307)
                      .+-|...++.|..-    .+..|.+.|.+++.+    .+.+..|.-+|+++.++ ..|+..+.+....++...|++++|.
T Consensus       153 ~d~A~~~lk~mq~i----ded~tLtQLA~awv~la~ggek~qdAfyifeE~s~k-~~~T~~llnG~Av~~l~~~~~eeAe  227 (299)
T KOG3081|consen  153 FDLAEKELKKMQQI----DEDATLTQLAQAWVKLATGGEKIQDAFYIFEELSEK-TPPTPLLLNGQAVCHLQLGRYEEAE  227 (299)
T ss_pred             HHHHHHHHHHHHcc----chHHHHHHHHHHHHHHhccchhhhhHHHHHHHHhcc-cCCChHHHccHHHHHHHhcCHHHHH
Confidence            77777777777653    345566666665553    24566777777777764 3567777777777777777777777


Q ss_pred             HHHHHHHHcCCCCcHhhHHHHHHHHhhchhH-HHHHHHHHHhh
Q 021791          246 QYFVEMIEKGLLPQKVTFETLYRGLIQSDML-RTWRRLKKKLD  287 (307)
Q Consensus       246 ~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~-~~a~~~~~~~~  287 (307)
                      .+++..+++. .-++.+...++..-...|.- +-..+.+..++
T Consensus       228 ~lL~eaL~kd-~~dpetL~Nliv~a~~~Gkd~~~~~r~l~QLk  269 (299)
T KOG3081|consen  228 SLLEEALDKD-AKDPETLANLIVLALHLGKDAEVTERNLSQLK  269 (299)
T ss_pred             HHHHHHHhcc-CCCHHHHHHHHHHHHHhCCChHHHHHHHHHHH
Confidence            7777777653 23455555555444444433 33334444443

>PRK15359 type III secretion system chaperone protein SscB; Provisional

Probab=98.77  E-value=1.3e-06  Score=61.24  Aligned_cols=96  Identities=5%  Similarity=-0.116  Sum_probs=60.3

Q ss_pred             HHHHHHHHHhcCCchhHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHhc
Q 021791           87 FSIVLHVYSRAHKPQLSLDKLNFMKEKGICPTVATYTSVVKCLCSCGRIEDAEELLGEMVRNGVSPSAETYNCFFKEYRG  166 (307)
Q Consensus        87 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~  166 (307)
                      +..+...+...|++++|...|+........ +...|..+..++.+.|++++|...|+.....+.. +...+..+..++..
T Consensus        27 ~~~~g~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p~-~~~a~~~lg~~l~~  104 (144)
T PRK15359         27 VYASGYASWQEGDYSRAVIDFSWLVMAQPW-SWRAHIALAGTWMMLKEYTTAINFYGHALMLDAS-HPEPVYQTGVCLKM  104 (144)
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC-CcHHHHHHHHHHHH
Confidence            444555666666666666666666655432 5566666666666666666666666666665432 55666666666666


Q ss_pred             CCChhHHHHHHHHHhhcC
Q 021791          167 RKDANGAMKLYRQMKEDD  184 (307)
Q Consensus       167 ~~~~~~a~~~~~~~~~~~  184 (307)
                      .|++++|...|+......
T Consensus       105 ~g~~~eAi~~~~~Al~~~  122 (144)
T PRK15359        105 MGEPGLAREAFQTAIKMS  122 (144)
T ss_pred             cCCHHHHHHHHHHHHHhC
Confidence            666666666666666553

>PRK15359 type III secretion system chaperone protein SscB; Provisional

Probab=98.77  E-value=1.9e-06  Score=60.37  Aligned_cols=95  Identities=12%  Similarity=-0.067  Sum_probs=61.2

Q ss_pred             HHHHHHHHhcCCChhHHHHHHHHHhhcCCCCccHHHHHHHHHHHHhcCcHHHHHHHHHHHhhCCCCCCHHhHHHHHHHHH
Q 021791          157 YNCFFKEYRGRKDANGAMKLYRQMKEDDLCVPNIHTYNILIGMFMALNRMDMVREIWNHVKGSELGLDLDSYTMLIHGLC  236 (307)
Q Consensus       157 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~  236 (307)
                      +......+...|++++|...|.......  +.+...+..+..++...|++++|...|+.....+. .+...+..+..++.
T Consensus        27 ~~~~g~~~~~~g~~~~A~~~~~~al~~~--P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p-~~~~a~~~lg~~l~  103 (144)
T PRK15359         27 VYASGYASWQEGDYSRAVIDFSWLVMAQ--PWSWRAHIALAGTWMMLKEYTTAINFYGHALMLDA-SHPEPVYQTGVCLK  103 (144)
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHcC--CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC-CCcHHHHHHHHHHH
Confidence            3344555666666666766666666654  45666666666666677777777777776666532 25566666666666


Q ss_pred             ccCcHHHHHHHHHHHHHc
Q 021791          237 EKQKWKEACQYFVEMIEK  254 (307)
Q Consensus       237 ~~g~~~~a~~~~~~~~~~  254 (307)
                      ..|++++|+..|+..++.
T Consensus       104 ~~g~~~eAi~~~~~Al~~  121 (144)
T PRK15359        104 MMGEPGLAREAFQTAIKM  121 (144)
T ss_pred             HcCCHHHHHHHHHHHHHh
Confidence            677777777777766654

>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional

Probab=98.74  E-value=1.9e-05  Score=69.33  Aligned_cols=148  Identities=11%  Similarity=0.019  Sum_probs=119.3

Q ss_pred             CCCCHHHHHHHHHHHHhcCCchhHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHhhHHH
Q 021791           80 IEPDVTSFSIVLHVYSRAHKPQLSLDKLNFMKEKGICPTVATYTSVVKCLCSCGRIEDAEELLGEMVRNGVSPSAETYNC  159 (307)
Q Consensus        80 ~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~  159 (307)
                      +..+...+-.|.....+.|..++|..+++...+.... +......+...+.+.+++++|+...++.....+. +......
T Consensus        82 ~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd-~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~-~~~~~~~  159 (694)
T PRK15179         82 YPHTELFQVLVARALEAAHRSDEGLAVWRGIHQRFPD-SSEAFILMLRGVKRQQGIEAGRAEIELYFSGGSS-SAREILL  159 (694)
T ss_pred             ccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCC-cHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCCC-CHHHHHH
Confidence            4556888888889999999999999999999887433 5667778888899999999999999999887554 6677778


Q ss_pred             HHHHHhcCCChhHHHHHHHHHhhcCCCCccHHHHHHHHHHHHhcCcHHHHHHHHHHHhhCCCCCCHHhHHHHH
Q 021791          160 FFKEYRGRKDANGAMKLYRQMKEDDLCVPNIHTYNILIGMFMALNRMDMVREIWNHVKGSELGLDLDSYTMLI  232 (307)
Q Consensus       160 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li  232 (307)
                      +..++.+.|++++|..+|+++...+  +.+..++..+..++...|+.++|...|+...+.. .+....|+..+
T Consensus       160 ~a~~l~~~g~~~~A~~~y~~~~~~~--p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~-~~~~~~~~~~~  229 (694)
T PRK15179        160 EAKSWDEIGQSEQADACFERLSRQH--PEFENGYVGWAQSLTRRGALWRARDVLQAGLDAI-GDGARKLTRRL  229 (694)
T ss_pred             HHHHHHHhcchHHHHHHHHHHHhcC--CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh-CcchHHHHHHH
Confidence            8888899999999999999998843  5568888999999999999999999998887652 33445555443

>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=98.74  E-value=1.2e-05  Score=63.82  Aligned_cols=169  Identities=12%  Similarity=0.047  Sum_probs=112.7

Q ss_pred             CCCCHHHHHHHHHHHHhcCCchhHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHhhHHH
Q 021791           80 IEPDVTSFSIVLHVYSRAHKPQLSLDKLNFMKEKGICPTVATYTSVVKCLCSCGRIEDAEELLGEMVRNGVSPSAETYNC  159 (307)
Q Consensus        80 ~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~  159 (307)
                      ++-|......+.+.+...|+.+.|+..|+.....+.. +........-.+.+.|+.++...+...+....- -+...|-.
T Consensus       228 lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~dpy-~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~~-~ta~~wfV  305 (564)
T KOG1174|consen  228 LRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCANPD-NVEAMDLYAVLLGQEGGCEQDSALMDYLFAKVK-YTASHWFV  305 (564)
T ss_pred             CCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCChh-hhhhHHHHHHHHHhccCHhhHHHHHHHHHhhhh-cchhhhhh
Confidence            5667778889999999999999999999988765321 233333344445667777777777666654321 13333433


Q ss_pred             HHHHHhcCCChhHHHHHHHHHhhcCCCCccHHHHHHHHHHHHhcCcHHHHHHHHHHHhhCCCCCCHHhHHHHHHHHHccC
Q 021791          160 FFKEYRGRKDANGAMKLYRQMKEDDLCVPNIHTYNILIGMFMALNRMDMVREIWNHVKGSELGLDLDSYTMLIHGLCEKQ  239 (307)
Q Consensus       160 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g  239 (307)
                      -.......++++.|+.+-++..+.+  +.+...|-.-...+...++.++|.-.|+...... +-+...|..++.+|...|
T Consensus       306 ~~~~l~~~K~~~rAL~~~eK~I~~~--~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~La-p~rL~~Y~GL~hsYLA~~  382 (564)
T KOG1174|consen  306 HAQLLYDEKKFERALNFVEKCIDSE--PRNHEALILKGRLLIALERHTQAVIAFRTAQMLA-PYRLEIYRGLFHSYLAQK  382 (564)
T ss_pred             hhhhhhhhhhHHHHHHHHHHHhccC--cccchHHHhccHHHHhccchHHHHHHHHHHHhcc-hhhHHHHHHHHHHHHhhc
Confidence            4444556677777777777777665  4555556555566677788888887777777652 236677888888888888


Q ss_pred             cHHHHHHHHHHHHH
Q 021791          240 KWKEACQYFVEMIE  253 (307)
Q Consensus       240 ~~~~a~~~~~~~~~  253 (307)
                      ++++|..+-+...+
T Consensus       383 ~~kEA~~~An~~~~  396 (564)
T KOG1174|consen  383 RFKEANALANWTIR  396 (564)
T ss_pred             hHHHHHHHHHHHHH
Confidence            88877776665544

>KOG4340 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.70  E-value=1.5e-06  Score=66.00  Aligned_cols=206  Identities=13%  Similarity=0.094  Sum_probs=143.5

Q ss_pred             CHHHHHHHHHHHHhcCCchhHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHhhHHH-HH
Q 021791           83 DVTSFSIVLHVYSRAHKPQLSLDKLNFMKEKGICPTVATYTSVVKCLCSCGRIEDAEELLGEMVRNGVSPSAETYNC-FF  161 (307)
Q Consensus        83 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~-l~  161 (307)
                      ...-+.+.+..+.+..++..+++++..-.+...+ +....+.+..+|.+..++..|-..++++...  .|...-|.. -.
T Consensus         9 ~EGeftaviy~lI~d~ry~DaI~~l~s~~Er~p~-~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql--~P~~~qYrlY~A   85 (459)
T KOG4340|consen    9 PEGEFTAVVYRLIRDARYADAIQLLGSELERSPR-SRAGLSLLGYCYYRLQEFALAAECYEQLGQL--HPELEQYRLYQA   85 (459)
T ss_pred             CCCchHHHHHHHHHHhhHHHHHHHHHHHHhcCcc-chHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--ChHHHHHHHHHH
Confidence            3344666777777888889999998887776433 7777888899999999999999999998775  344444432 34


Q ss_pred             HHHhcCCChhHHHHHHHHHhhcCCCCccHHHHHHHHHHHHhcCcHHHHHHHHHHHhhCCCCCCHHhHHHHHHHHHccCcH
Q 021791          162 KEYRGRKDANGAMKLYRQMKEDDLCVPNIHTYNILIGMFMALNRMDMVREIWNHVKGSELGLDLDSYTMLIHGLCEKQKW  241 (307)
Q Consensus       162 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~  241 (307)
                      +.+.+.+.+..|+++...|....  ..-..+...-.......+++..+..++++....|   +..+.+.......+.|++
T Consensus        86 QSLY~A~i~ADALrV~~~~~D~~--~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en---~Ad~~in~gCllykegqy  160 (459)
T KOG4340|consen   86 QSLYKACIYADALRVAFLLLDNP--ALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSEN---EADGQINLGCLLYKEGQY  160 (459)
T ss_pred             HHHHHhcccHHHHHHHHHhcCCH--HHHHHHHHHHHHHhcccccCcchHHHHHhccCCC---ccchhccchheeeccccH
Confidence            56678888999999998887642  1111111111122235678888888888776543   444444444455688999


Q ss_pred             HHHHHHHHHHHHc-CCCCcHhhHHHHHHHHhhchhHHHHHHHHHHhhhcCCCCCcccC
Q 021791          242 KEACQYFVEMIEK-GLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDEESITFGSEFQ  298 (307)
Q Consensus       242 ~~a~~~~~~~~~~-~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~  298 (307)
                      ++|.+-|+...+- |..| ...|+. .-+..+.|+++.|.+...++.+.|+.-.+++.
T Consensus       161 EaAvqkFqaAlqvsGyqp-llAYni-ALaHy~~~qyasALk~iSEIieRG~r~HPElg  216 (459)
T KOG4340|consen  161 EAAVQKFQAALQVSGYQP-LLAYNL-ALAHYSSRQYASALKHISEIIERGIRQHPELG  216 (459)
T ss_pred             HHHHHHHHHHHhhcCCCc-hhHHHH-HHHHHhhhhHHHHHHHHHHHHHhhhhcCCccC
Confidence            9999999998876 4443 344553 44567788999999999999999988777764

>KOG2047 consensus mRNA splicing factor [RNA processing and modification]

Probab=98.68  E-value=5.5e-05  Score=63.58  Aligned_cols=110  Identities=7%  Similarity=0.039  Sum_probs=73.2

Q ss_pred             HHHHHHHHHHHhcCcHHHHHHHHHHHhhCCCCCC---HHhHHHHHHHHHccCcHHHHHHHHHHHHHc----------CCC
Q 021791          191 HTYNILIGMFMALNRMDMVREIWNHVKGSELGLD---LDSYTMLIHGLCEKQKWKEACQYFVEMIEK----------GLL  257 (307)
Q Consensus       191 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~li~~~~~~g~~~~a~~~~~~~~~~----------~~~  257 (307)
                      ..|..+...|-..|+++.|+.+|++..+-..+--   ..+|....+.=.++.+++.|++++++....          |..
T Consensus       388 ~Lw~~faklYe~~~~l~~aRvifeka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~  467 (835)
T KOG2047|consen  388 TLWVEFAKLYENNGDLDDARVIFEKATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSE  467 (835)
T ss_pred             hHHHHHHHHHHhcCcHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCC
Confidence            3467777888888999999999998887644322   234555556666778888888888776432          111


Q ss_pred             C-------cHhhHHHHHHHHhhchhHHHHHHHHHHhhhcCCCCCcccCCC
Q 021791          258 P-------QKVTFETLYRGLIQSDMLRTWRRLKKKLDEESITFGSEFQNY  300 (307)
Q Consensus       258 p-------~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~  300 (307)
                      |       +...|..+++.-...|-++..+.+++++.+..+..+....||
T Consensus       468 pvQ~rlhrSlkiWs~y~DleEs~gtfestk~vYdriidLriaTPqii~Ny  517 (835)
T KOG2047|consen  468 PVQARLHRSLKIWSMYADLEESLGTFESTKAVYDRIIDLRIATPQIIINY  517 (835)
T ss_pred             cHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCHHHHHHH
Confidence            1       223455566666677888888888888887776655544443

>PRK04841 transcriptional regulator MalT; Provisional

Probab=98.66  E-value=9.8e-05  Score=68.41  Aligned_cols=270  Identities=10%  Similarity=-0.007  Sum_probs=171.8

Q ss_pred             HHHHHhcCchhhHHHHHHHHHhcCCCCcH----HHHHHHHHHHHhhCCCCcchhhHHHHHHHHHHHHHHHhc----CC-C
Q 021791           11 IYGWCKINRIDMAERFLGEMIERGVEPNV----VTYNVLLNGVCRRASLHPNERFEKTIRNAEKVFDEMRVR----GI-E   81 (307)
Q Consensus        11 i~~~~~~g~~~~a~~~~~~~~~~~~~p~~----~~~~~ll~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~----~~-~   81 (307)
                      ...+...|+++.|...+++....-...+.    ...+.+...+..          .|++++|...+++....    |. .
T Consensus       459 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~----------~G~~~~A~~~~~~al~~~~~~g~~~  528 (903)
T PRK04841        459 AQVAINDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHC----------KGELARALAMMQQTEQMARQHDVYH  528 (903)
T ss_pred             HHHHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHH----------cCCHHHHHHHHHHHHHHHhhhcchH
Confidence            34556789999999999988763111121    233344444445          67788888888777543    11 1


Q ss_pred             CCHHHHHHHHHHHHhcCCchhHHHHHHHHHHc----CCC--C-chhhHHHHHHHHHhcCChHHHHHHHHHHHhCC--CCC
Q 021791           82 PDVTSFSIVLHVYSRAHKPQLSLDKLNFMKEK----GIC--P-TVATYTSVVKCLCSCGRIEDAEELLGEMVRNG--VSP  152 (307)
Q Consensus        82 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~----~~~--~-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~--~~~  152 (307)
                      +...++..+...+...|+++.|...+++....    +..  + ....+..+...+...|++++|...+.+.....  ..+
T Consensus       529 ~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~  608 (903)
T PRK04841        529 YALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQP  608 (903)
T ss_pred             HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCc
Confidence            12234566677888999999999998876543    221  1 22334455666778899999999998875431  112


Q ss_pred             --CHhhHHHHHHHHhcCCChhHHHHHHHHHhhcCCCCccHHHH-----HHHHHHHHhcCcHHHHHHHHHHHhhCCCCCCH
Q 021791          153 --SAETYNCFFKEYRGRKDANGAMKLYRQMKEDDLCVPNIHTY-----NILIGMFMALNRMDMVREIWNHVKGSELGLDL  225 (307)
Q Consensus       153 --~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~-----~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~  225 (307)
                        ....+..+...+...|++++|.+.+.+.............+     ...+..+...|+.+.|...+............
T Consensus       609 ~~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~  688 (903)
T PRK04841        609 QQQLQCLAMLAKISLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNH  688 (903)
T ss_pred             hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccch
Confidence              23344556667888999999999998875431101111111     11224455688999999998776543211111


Q ss_pred             ---HhHHHHHHHHHccCcHHHHHHHHHHHHHc----CCCCc-HhhHHHHHHHHhhchhHHHHHHHHHHhhhcC
Q 021791          226 ---DSYTMLIHGLCEKQKWKEACQYFVEMIEK----GLLPQ-KVTFETLYRGLIQSDMLRTWRRLKKKLDEES  290 (307)
Q Consensus       226 ---~~~~~li~~~~~~g~~~~a~~~~~~~~~~----~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~  290 (307)
                         ..+..+..++...|++++|...+++....    |..++ ..+...+..++...|+.++|...+.+..+..
T Consensus       689 ~~~~~~~~~a~~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~la  761 (903)
T PRK04841        689 FLQGQWRNIARAQILLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEALKLA  761 (903)
T ss_pred             hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHh
Confidence               11345667788899999999999988764    33222 2355666778889999999999888876544

>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]

Probab=98.66  E-value=0.00018  Score=61.67  Aligned_cols=123  Identities=9%  Similarity=-0.039  Sum_probs=85.9

Q ss_pred             HhcCCChhHHHHHHHHHhhcCCCCccHHHHHHHHHHHHhcCcHHHHHHHHHHHhhCCCCCCHHhHHHHHHHHHccCcHHH
Q 021791          164 YRGRKDANGAMKLYRQMKEDDLCVPNIHTYNILIGMFMALNRMDMVREIWNHVKGSELGLDLDSYTMLIHGLCEKQKWKE  243 (307)
Q Consensus       164 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~  243 (307)
                      +.+.+..++|...+.+.....  +.....|......+...|.+++|.+.|......+.. ++.....+..++...|+..-
T Consensus       660 ~~~~~~~~~a~~CL~Ea~~~~--~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~ldP~-hv~s~~Ala~~lle~G~~~l  736 (799)
T KOG4162|consen  660 FLLSGNDDEARSCLLEASKID--PLSASVYYLRGLLLEVKGQLEEAKEAFLVALALDPD-HVPSMTALAELLLELGSPRL  736 (799)
T ss_pred             HHhcCCchHHHHHHHHHHhcc--hhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHhcCCC-CcHHHHHHHHHHHHhCCcch
Confidence            334444444444444443332  334444555555566677888888888777765422 56678888899999998887


Q ss_pred             HHH--HHHHHHHcCCCCcHhhHHHHHHHHhhchhHHHHHHHHHHhhhcC
Q 021791          244 ACQ--YFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDEES  290 (307)
Q Consensus       244 a~~--~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~  290 (307)
                      |..  ++.++.+.+ +.+...|..+...+.+.|+.++|-+.|....+..
T Consensus       737 a~~~~~L~dalr~d-p~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~qLe  784 (799)
T KOG4162|consen  737 AEKRSLLSDALRLD-PLNHEAWYYLGEVFKKLGDSKQAAECFQAALQLE  784 (799)
T ss_pred             HHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHccchHHHHHHHHHHHhhc
Confidence            777  888888775 4577889999999999999999999998765543

>PF13812 PPR_3: Pentatricopeptide repeat domain

Probab=98.65  E-value=5.1e-08  Score=49.68  Aligned_cols=34  Identities=35%  Similarity=0.555  Sum_probs=32.3

Q ss_pred             HHHHHHHHHHHHhcCchhhHHHHHHHHHhcCCCC
Q 021791            4 VKMYTSLIYGWCKINRIDMAERFLGEMIERGVEP   37 (307)
Q Consensus         4 ~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p   37 (307)
                      +.+||.+|.+|++.|+++.|.++|++|.+.|++|
T Consensus         1 v~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P   34 (34)
T PF13812_consen    1 VHTYNALLRACAKAGDPDAALQLFDEMKEQGVKP   34 (34)
T ss_pred             CcHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence            4689999999999999999999999999999987

>KOG4340 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.65  E-value=4.9e-05  Score=57.97  Aligned_cols=261  Identities=13%  Similarity=0.120  Sum_probs=158.8

Q ss_pred             HHHHHHHHHhcCchhhHHHHHHHHHhcCCCC-cHHHHHHHHHHHHhhCCCCcchhhHHHHHHHHHHHHHHHhcCCCCCHH
Q 021791            7 YTSLIYGWCKINRIDMAERFLGEMIERGVEP-NVVTYNVLLNGVCRRASLHPNERFEKTIRNAEKVFDEMRVRGIEPDVT   85 (307)
Q Consensus         7 ~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p-~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~   85 (307)
                      +.+.+..+.+..+++.|++++....++  .| +......|-.+|..          ..++..|-.-++++-..  -|...
T Consensus        13 ftaviy~lI~d~ry~DaI~~l~s~~Er--~p~~rAgLSlLgyCYY~----------~Q~f~~AA~CYeQL~ql--~P~~~   78 (459)
T KOG4340|consen   13 FTAVVYRLIRDARYADAIQLLGSELER--SPRSRAGLSLLGYCYYR----------LQEFALAAECYEQLGQL--HPELE   78 (459)
T ss_pred             hHHHHHHHHHHhhHHHHHHHHHHHHhc--CccchHHHHHHHHHHHH----------HHHHHHHHHHHHHHHhh--ChHHH
Confidence            566777778888999999999888776  34 56667777777777          78888888888887655  34443


Q ss_pred             HHHH-HHHHHHhcCCchhHHHHHHHHHHcC-------------------------------CCCchhhHHHHHHHHHhcC
Q 021791           86 SFSI-VLHVYSRAHKPQLSLDKLNFMKEKG-------------------------------ICPTVATYTSVVKCLCSCG  133 (307)
Q Consensus        86 ~~~~-ll~~~~~~~~~~~a~~~~~~~~~~~-------------------------------~~~~~~~~~~ll~~~~~~~  133 (307)
                      -|.. -...+.+.+.+..|+.+...|....                               ...+..+.+.......+.|
T Consensus        79 qYrlY~AQSLY~A~i~ADALrV~~~~~D~~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en~Ad~~in~gCllykeg  158 (459)
T KOG4340|consen   79 QYRLYQAQSLYKACIYADALRVAFLLLDNPALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSENEADGQINLGCLLYKEG  158 (459)
T ss_pred             HHHHHHHHHHHHhcccHHHHHHHHHhcCCHHHHHHHHHHHHHHhcccccCcchHHHHHhccCCCccchhccchheeeccc
Confidence            3321 2233445555555555555443310                               0112333333333445778


Q ss_pred             ChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHhcCCChhHHHHHHHHHhhcCCCCc-------------cHH--------H
Q 021791          134 RIEDAEELLGEMVRNGVSPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDDLCVP-------------NIH--------T  192 (307)
Q Consensus       134 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-------------~~~--------~  192 (307)
                      +++.|.+-|+...+.+---....|+..+.. .+.++.+.|++...++.+.|. ..             |+.        .
T Consensus       159 qyEaAvqkFqaAlqvsGyqpllAYniALaH-y~~~qyasALk~iSEIieRG~-r~HPElgIGm~tegiDvrsvgNt~~lh  236 (459)
T KOG4340|consen  159 QYEAAVQKFQAALQVSGYQPLLAYNLALAH-YSSRQYASALKHISEIIERGI-RQHPELGIGMTTEGIDVRSVGNTLVLH  236 (459)
T ss_pred             cHHHHHHHHHHHHhhcCCCchhHHHHHHHH-HhhhhHHHHHHHHHHHHHhhh-hcCCccCccceeccCchhcccchHHHH
Confidence            888888888877765433355667666544 456788888888888877764 21             111        0


Q ss_pred             HHHHHHH-------HHhcCcHHHHHHHHHHHhhC-CCCCCHHhHHHHHHHHHccCcHHHHHHHHHHHHHcCCCCcHhhHH
Q 021791          193 YNILIGM-------FMALNRMDMVREIWNHVKGS-ELGLDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFE  264 (307)
Q Consensus       193 ~~~l~~~-------~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~  264 (307)
                      -+.++.+       +.+.|+++.|.+.+-.|.-+ ....|+.|.+.+.-.= -.+++.+..+-+.-+++.+. -...||.
T Consensus       237 ~Sal~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~n-~~~~p~~g~~KLqFLL~~nP-fP~ETFA  314 (459)
T KOG4340|consen  237 QSALVEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALMN-MDARPTEGFEKLQFLLQQNP-FPPETFA  314 (459)
T ss_pred             HHHHHHHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHhc-ccCCccccHHHHHHHHhcCC-CChHHHH
Confidence            1223322       34667777777777766532 1234566655554332 23445555555555554432 3456888


Q ss_pred             HHHHHHhhchhHHHHHHHHHH
Q 021791          265 TLYRGLIQSDMLRTWRRLKKK  285 (307)
Q Consensus       265 ~l~~~~~~~g~~~~a~~~~~~  285 (307)
                      .++-.|++..-++.|-.++.+
T Consensus       315 NlLllyCKNeyf~lAADvLAE  335 (459)
T KOG4340|consen  315 NLLLLYCKNEYFDLAADVLAE  335 (459)
T ss_pred             HHHHHHhhhHHHhHHHHHHhh
Confidence            888889999888888887754

>KOG3060 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.65  E-value=6.5e-05  Score=55.91  Aligned_cols=188  Identities=9%  Similarity=0.085  Sum_probs=133.4

Q ss_pred             HHHHHHHHHHHHHHHhc---C-CCCCHH-HHHHHHHHHHhcCCchhHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCChH
Q 021791           62 EKTIRNAEKVFDEMRVR---G-IEPDVT-SFSIVLHVYSRAHKPQLSLDKLNFMKEKGICPTVATYTSVVKCLCSCGRIE  136 (307)
Q Consensus        62 ~~~~~~a~~~~~~~~~~---~-~~~~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~  136 (307)
                      ..+.++..+++.++...   | ..++.. .|.-++-+....|+.+.|...++.+...- +-+..+-..-...+-..|+++
T Consensus        25 ~rnseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~f-p~S~RV~~lkam~lEa~~~~~  103 (289)
T KOG3060|consen   25 VRNSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRF-PGSKRVGKLKAMLLEATGNYK  103 (289)
T ss_pred             ccCHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhC-CCChhHHHHHHHHHHHhhchh
Confidence            56678888888877543   3 445554 35556667777888888999998887763 334444444444556778899


Q ss_pred             HHHHHHHHHHhCCCCCCHhhHHHHHHHHhcCCChhHHHHHHHHHhhcCCCCccHHHHHHHHHHHHhcCcHHHHHHHHHHH
Q 021791          137 DAEELLGEMVRNGVSPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDDLCVPNIHTYNILIGMFMALNRMDMVREIWNHV  216 (307)
Q Consensus       137 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~  216 (307)
                      +|.++++.+.+.++. |..++-.=+...-..|+.-+|++-+....+.-  ..|...|.-+...|...|++++|.-.++++
T Consensus       104 ~A~e~y~~lL~ddpt-~~v~~KRKlAilka~GK~l~aIk~ln~YL~~F--~~D~EAW~eLaeiY~~~~~f~kA~fClEE~  180 (289)
T KOG3060|consen  104 EAIEYYESLLEDDPT-DTVIRKRKLAILKAQGKNLEAIKELNEYLDKF--MNDQEAWHELAEIYLSEGDFEKAAFCLEEL  180 (289)
T ss_pred             hHHHHHHHHhccCcc-hhHHHHHHHHHHHHcCCcHHHHHHHHHHHHHh--cCcHHHHHHHHHHHHhHhHHHHHHHHHHHH
Confidence            999999998887643 66666666666667777778888888777764  678889999999999999999999999888


Q ss_pred             hhCCCCCCHHhHHHHHHHHHcc---CcHHHHHHHHHHHHHc
Q 021791          217 KGSELGLDLDSYTMLIHGLCEK---QKWKEACQYFVEMIEK  254 (307)
Q Consensus       217 ~~~~~~~~~~~~~~li~~~~~~---g~~~~a~~~~~~~~~~  254 (307)
                      .-.. +.++..+..+.+.+--.   .+.+-+.++|.+.++.
T Consensus       181 ll~~-P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl  220 (289)
T KOG3060|consen  181 LLIQ-PFNPLYFQRLAEVLYTQGGAENLELARKYYERALKL  220 (289)
T ss_pred             HHcC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHh
Confidence            8763 22555556666655333   3566788888887754

>KOG3060 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.64  E-value=7e-05  Score=55.74  Aligned_cols=189  Identities=11%  Similarity=0.102  Sum_probs=142.1

Q ss_pred             cCchhhHHHHHHHHHhc---C-CCCcHH-HHHHHHHHHHhhCCCCcchhhHHHHHHHHHHHHHHHhcCCCCCHHHHHHHH
Q 021791           17 INRIDMAERFLGEMIER---G-VEPNVV-TYNVLLNGVCRRASLHPNERFEKTIRNAEKVFDEMRVRGIEPDVTSFSIVL   91 (307)
Q Consensus        17 ~g~~~~a~~~~~~~~~~---~-~~p~~~-~~~~ll~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll   91 (307)
                      ..+.++.++++.++...   | ..++.. .|..++-+...          .++.+-|...++++... ++-+..+-..-.
T Consensus        25 ~rnseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld----------~~~~~lAq~C~~~L~~~-fp~S~RV~~lka   93 (289)
T KOG3060|consen   25 VRNSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALD----------TGRDDLAQKCINQLRDR-FPGSKRVGKLKA   93 (289)
T ss_pred             ccCHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHH----------hcchHHHHHHHHHHHHh-CCCChhHHHHHH
Confidence            35678899999988754   4 555654 45555556666          77888999999998876 333333332222


Q ss_pred             HHHHhcCCchhHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHhcCCChh
Q 021791           92 HVYSRAHKPQLSLDKLNFMKEKGICPTVATYTSVVKCLCSCGRIEDAEELLGEMVRNGVSPSAETYNCFFKEYRGRKDAN  171 (307)
Q Consensus        92 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~  171 (307)
                      -.+-..|++++|+++|+.+.+.+ +.|..++-.-+-..-..|+.-+|++-+....+. +..|...|.-+...|...|+++
T Consensus        94 m~lEa~~~~~~A~e~y~~lL~dd-pt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~-F~~D~EAW~eLaeiY~~~~~f~  171 (289)
T KOG3060|consen   94 MLLEATGNYKEAIEYYESLLEDD-PTDTVIRKRKLAILKAQGKNLEAIKELNEYLDK-FMNDQEAWHELAEIYLSEGDFE  171 (289)
T ss_pred             HHHHHhhchhhHHHHHHHHhccC-cchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHH-hcCcHHHHHHHHHHHHhHhHHH
Confidence            33556889999999999999886 347777877777777888888998888888776 4569999999999999999999


Q ss_pred             HHHHHHHHHhhcCCCCccHHHHHHHHHHHHhcC---cHHHHHHHHHHHhhCC
Q 021791          172 GAMKLYRQMKEDDLCVPNIHTYNILIGMFMALN---RMDMVREIWNHVKGSE  220 (307)
Q Consensus       172 ~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~---~~~~a~~~~~~~~~~~  220 (307)
                      +|.-.++++.-..  |.++..+..+...+.-.|   +.+.+.+.+.+..+..
T Consensus       172 kA~fClEE~ll~~--P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl~  221 (289)
T KOG3060|consen  172 KAAFCLEELLLIQ--PFNPLYFQRLAEVLYTQGGAENLELARKYYERALKLN  221 (289)
T ss_pred             HHHHHHHHHHHcC--CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhC
Confidence            9999999999875  556666666666655444   5677888998888764

>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD

Probab=98.63  E-value=4e-06  Score=58.27  Aligned_cols=97  Identities=14%  Similarity=0.055  Sum_probs=59.1

Q ss_pred             hhHHHHHHHHhcCCChhHHHHHHHHHhhcCCCCccHHHHHHHHHHHHhcCcHHHHHHHHHHHhhCCCCCCHHhHHHHHHH
Q 021791          155 ETYNCFFKEYRGRKDANGAMKLYRQMKEDDLCVPNIHTYNILIGMFMALNRMDMVREIWNHVKGSELGLDLDSYTMLIHG  234 (307)
Q Consensus       155 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~  234 (307)
                      .....+...+...|++++|...++.+...+  +.+...+..+...+...|++++|...++.....+ +.+...+..+..+
T Consensus        18 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~--p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~   94 (135)
T TIGR02552        18 EQIYALAYNLYQQGRYDEALKLFQLLAAYD--PYNSRYWLGLAACCQMLKEYEEAIDAYALAAALD-PDDPRPYFHAAEC   94 (135)
T ss_pred             HHHHHHHHHHHHcccHHHHHHHHHHHHHhC--CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCChHHHHHHHHH
Confidence            344445555666666666666666665544  4455666666666666666666666666665543 2245555556666


Q ss_pred             HHccCcHHHHHHHHHHHHHc
Q 021791          235 LCEKQKWKEACQYFVEMIEK  254 (307)
Q Consensus       235 ~~~~g~~~~a~~~~~~~~~~  254 (307)
                      +...|++++|...|++..+.
T Consensus        95 ~~~~g~~~~A~~~~~~al~~  114 (135)
T TIGR02552        95 LLALGEPESALKALDLAIEI  114 (135)
T ss_pred             HHHcCCHHHHHHHHHHHHHh
Confidence            66666666676666666654

ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.

>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]

Probab=98.63  E-value=6e-05  Score=61.27  Aligned_cols=139  Identities=10%  Similarity=0.053  Sum_probs=100.1

Q ss_pred             HHHhcCCchhHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCC-HhhHHHHHHHHhcCCChh
Q 021791           93 VYSRAHKPQLSLDKLNFMKEKGICPTVATYTSVVKCLCSCGRIEDAEELLGEMVRNGVSPS-AETYNCFFKEYRGRKDAN  171 (307)
Q Consensus        93 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~  171 (307)
                      .+...|++++|++.+..+...- +-|...+......+.+.++.++|.+.++.+....  |+ ......+..++.+.|++.
T Consensus       315 ~~~~~~~~d~A~~~l~~L~~~~-P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~--P~~~~l~~~~a~all~~g~~~  391 (484)
T COG4783         315 QTYLAGQYDEALKLLQPLIAAQ-PDNPYYLELAGDILLEANKAKEAIERLKKALALD--PNSPLLQLNLAQALLKGGKPQ  391 (484)
T ss_pred             HHHHhcccchHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcC--CCccHHHHHHHHHHHhcCChH
Confidence            4456777888888888877663 2355556666777888888888888888887753  33 556666777788888888


Q ss_pred             HHHHHHHHHhhcCCCCccHHHHHHHHHHHHhcCcHHHHHHHHHHHhhCCCCCCHHhHHHHHHHHHccCcHHHHHHHHHHH
Q 021791          172 GAMKLYRQMKEDDLCVPNIHTYNILIGMFMALNRMDMVREIWNHVKGSELGLDLDSYTMLIHGLCEKQKWKEACQYFVEM  251 (307)
Q Consensus       172 ~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~  251 (307)
                      +|..+++......  +.|+..|..|.++|...|+..++.....+                  .|...|++++|...+...
T Consensus       392 eai~~L~~~~~~~--p~dp~~w~~LAqay~~~g~~~~a~~A~AE------------------~~~~~G~~~~A~~~l~~A  451 (484)
T COG4783         392 EAIRILNRYLFND--PEDPNGWDLLAQAYAELGNRAEALLARAE------------------GYALAGRLEQAIIFLMRA  451 (484)
T ss_pred             HHHHHHHHHhhcC--CCCchHHHHHHHHHHHhCchHHHHHHHHH------------------HHHhCCCHHHHHHHHHHH
Confidence            8888888877765  67777888888888888877776654433                  345577888888888877


Q ss_pred             HHc
Q 021791          252 IEK  254 (307)
Q Consensus       252 ~~~  254 (307)
                      .+.
T Consensus       452 ~~~  454 (484)
T COG4783         452 SQQ  454 (484)
T ss_pred             HHh
Confidence            766

>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif)

Probab=98.62  E-value=5.6e-08  Score=49.92  Aligned_cols=35  Identities=46%  Similarity=0.855  Sum_probs=32.9

Q ss_pred             HHHHHHHHHHHhcCchhhHHHHHHHHHhcCCCCcH
Q 021791            5 KMYTSLIYGWCKINRIDMAERFLGEMIERGVEPNV   39 (307)
Q Consensus         5 ~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~   39 (307)
                      .+||++|.+|++.|++++|.++|.+|.+.|++||.
T Consensus         1 ~~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~~   35 (35)
T TIGR00756         1 VTYNTLIDGLCKAGRVEEALELFKEMLERGIEPDV   35 (35)
T ss_pred             CcHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCC
Confidence            37999999999999999999999999999999984

This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.

>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi

Probab=98.59  E-value=4.2e-06  Score=67.98  Aligned_cols=121  Identities=13%  Similarity=0.201  Sum_probs=71.5

Q ss_pred             HHHHHHHhcCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHhcCCChhHHHHHHHHHhhcCCCCccHHHHHHHHHHHHhc
Q 021791          124 SVVKCLCSCGRIEDAEELLGEMVRNGVSPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDDLCVPNIHTYNILIGMFMAL  203 (307)
Q Consensus       124 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  203 (307)
                      .++..+...++++.|..+++++.+..  |+  ....+++.+...++..+|.+++.+..+..  +.+...+..-...+.+.
T Consensus       174 ~Ll~~l~~t~~~~~ai~lle~L~~~~--pe--v~~~LA~v~l~~~~E~~AI~ll~~aL~~~--p~d~~LL~~Qa~fLl~k  247 (395)
T PF09295_consen  174 TLLKYLSLTQRYDEAIELLEKLRERD--PE--VAVLLARVYLLMNEEVEAIRLLNEALKEN--PQDSELLNLQAEFLLSK  247 (395)
T ss_pred             HHHHHHhhcccHHHHHHHHHHHHhcC--Cc--HHHHHHHHHHhcCcHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHhc
Confidence            34445555566666666666666543  22  33345555556666666666666666543  44555555556666666


Q ss_pred             CcHHHHHHHHHHHhhCCCCCCHHhHHHHHHHHHccCcHHHHHHHHHHH
Q 021791          204 NRMDMVREIWNHVKGSELGLDLDSYTMLIHGLCEKQKWKEACQYFVEM  251 (307)
Q Consensus       204 ~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~  251 (307)
                      ++.+.|.++.+++.... +-+..+|..|..+|...|+++.|+..++.+
T Consensus       248 ~~~~lAL~iAk~av~ls-P~~f~~W~~La~~Yi~~~d~e~ALlaLNs~  294 (395)
T PF09295_consen  248 KKYELALEIAKKAVELS-PSEFETWYQLAECYIQLGDFENALLALNSC  294 (395)
T ss_pred             CCHHHHHHHHHHHHHhC-chhHHHHHHHHHHHHhcCCHHHHHHHHhcC
Confidence            66666666666666652 113446666666666666666666666544

They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].

>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD

Probab=98.58  E-value=5.1e-06  Score=57.71  Aligned_cols=93  Identities=13%  Similarity=0.080  Sum_probs=41.8

Q ss_pred             HHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHhcCCChhHHHHHHHHHhhcCCCCccHHHHHHHHHHHHh
Q 021791          123 TSVVKCLCSCGRIEDAEELLGEMVRNGVSPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDDLCVPNIHTYNILIGMFMA  202 (307)
Q Consensus       123 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~  202 (307)
                      ..+...+...|++++|.+.++.+...+.. +...+..+...+...|++++|...+++.....  +.+...+..+...+..
T Consensus        21 ~~~a~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~--p~~~~~~~~la~~~~~   97 (135)
T TIGR02552        21 YALAYNLYQQGRYDEALKLFQLLAAYDPY-NSRYWLGLAACCQMLKEYEEAIDAYALAAALD--PDDPRPYFHAAECLLA   97 (135)
T ss_pred             HHHHHHHHHcccHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC--CCChHHHHHHHHHHHH
Confidence            33444444444444444444444443221 33444444444444444444444444444432  3334444444444444


Q ss_pred             cCcHHHHHHHHHHHhh
Q 021791          203 LNRMDMVREIWNHVKG  218 (307)
Q Consensus       203 ~~~~~~a~~~~~~~~~  218 (307)
                      .|++++|...|+...+
T Consensus        98 ~g~~~~A~~~~~~al~  113 (135)
T TIGR02552        98 LGEPESALKALDLAIE  113 (135)
T ss_pred             cCCHHHHHHHHHHHHH
Confidence            5555555555544444

ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.

>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi

Probab=98.56  E-value=5.9e-06  Score=67.15  Aligned_cols=127  Identities=14%  Similarity=0.147  Sum_probs=107.2

Q ss_pred             HHHHHHHHHHHhcCCchhHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHH
Q 021791           85 TSFSIVLHVYSRAHKPQLSLDKLNFMKEKGICPTVATYTSVVKCLCSCGRIEDAEELLGEMVRNGVSPSAETYNCFFKEY  164 (307)
Q Consensus        85 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~  164 (307)
                      .....|+..+...++++.|..+++++.+..  |+  ....++..+...++-.+|.+++++....... +......-...+
T Consensus       170 yLv~~Ll~~l~~t~~~~~ai~lle~L~~~~--pe--v~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~-d~~LL~~Qa~fL  244 (395)
T PF09295_consen  170 YLVDTLLKYLSLTQRYDEAIELLEKLRERD--PE--VAVLLARVYLLMNEEVEAIRLLNEALKENPQ-DSELLNLQAEFL  244 (395)
T ss_pred             HHHHHHHHHHhhcccHHHHHHHHHHHHhcC--Cc--HHHHHHHHHHhcCcHHHHHHHHHHHHHhCCC-CHHHHHHHHHHH
Confidence            345667778888899999999999999874  44  4556888888899999999999999876433 677777777889


Q ss_pred             hcCCChhHHHHHHHHHhhcCCCCccHHHHHHHHHHHHhcCcHHHHHHHHHHHhh
Q 021791          165 RGRKDANGAMKLYRQMKEDDLCVPNIHTYNILIGMFMALNRMDMVREIWNHVKG  218 (307)
Q Consensus       165 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~  218 (307)
                      .+.++++.|+.+.++.....  +.+..+|..|..+|...|+++.|+..++.+..
T Consensus       245 l~k~~~~lAL~iAk~av~ls--P~~f~~W~~La~~Yi~~~d~e~ALlaLNs~Pm  296 (395)
T PF09295_consen  245 LSKKKYELALEIAKKAVELS--PSEFETWYQLAECYIQLGDFENALLALNSCPM  296 (395)
T ss_pred             HhcCCHHHHHHHHHHHHHhC--chhHHHHHHHHHHHHhcCCHHHHHHHHhcCcC
Confidence            99999999999999999985  55677999999999999999999999987763

They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].

>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]

Probab=98.56  E-value=0.00028  Score=58.32  Aligned_cols=64  Identities=14%  Similarity=0.246  Sum_probs=45.4

Q ss_pred             cHHHHHHHHHHHHhcCchhhHHHHHHHHHhcCCCCcHHHHHHHHHHHHhhCCCCcchhhHHHHHHHHHHHHHHHhc
Q 021791            3 NVKMYTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPNERFEKTIRNAEKVFDEMRVR   78 (307)
Q Consensus         3 ~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~   78 (307)
                      |+.+|+.||+-+... .++++.+.++++... .+-+...|..-|..-..          .++++..+++|.+....
T Consensus        19 di~sw~~lire~qt~-~~~~~R~~YEq~~~~-FP~s~r~W~~yi~~El~----------skdfe~VEkLF~RCLvk   82 (656)
T KOG1914|consen   19 DIDSWSQLIREAQTQ-PIDKVRETYEQLVNV-FPSSPRAWKLYIERELA----------SKDFESVEKLFSRCLVK   82 (656)
T ss_pred             cHHHHHHHHHHHccC-CHHHHHHHHHHHhcc-CCCCcHHHHHHHHHHHH----------hhhHHHHHHHHHHHHHH
Confidence            788888888887666 888888888888754 33355677777777777          56666666666665443

>KOG3785 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.56  E-value=0.00011  Score=57.60  Aligned_cols=94  Identities=13%  Similarity=0.085  Sum_probs=53.1

Q ss_pred             HHHHHHHhcCcHHHHHHHHHHHhhCCCCCCHHhHHH-HHHHHHccCcHHHHHHHHHHHHHcCCCCcHhhHHHH-HHHHhh
Q 021791          195 ILIGMFMALNRMDMVREIWNHVKGSELGLDLDSYTM-LIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETL-YRGLIQ  272 (307)
Q Consensus       195 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~-li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l-~~~~~~  272 (307)
                      .+.++++..|.+.+|+++|-.+....++ |..+|.+ +.++|.++++++.|+.++-++.   -+.+..+...+ .+-|.+
T Consensus       398 N~AQAk~atgny~eaEelf~~is~~~ik-n~~~Y~s~LArCyi~nkkP~lAW~~~lk~~---t~~e~fsLLqlIAn~CYk  473 (557)
T KOG3785|consen  398 NLAQAKLATGNYVEAEELFIRISGPEIK-NKILYKSMLARCYIRNKKPQLAWDMMLKTN---TPSERFSLLQLIANDCYK  473 (557)
T ss_pred             HHHHHHHHhcChHHHHHHHhhhcChhhh-hhHHHHHHHHHHHHhcCCchHHHHHHHhcC---CchhHHHHHHHHHHHHHH
Confidence            3455666667777777777666655444 4444443 4466677777777666654442   22233333333 345667


Q ss_pred             chhHHHHHHHHHHhhhcCCC
Q 021791          273 SDMLRTWRRLKKKLDEESIT  292 (307)
Q Consensus       273 ~g~~~~a~~~~~~~~~~~~~  292 (307)
                      .+.+--|-+.|+.+...+.+
T Consensus       474 ~~eFyyaaKAFd~lE~lDP~  493 (557)
T KOG3785|consen  474 ANEFYYAAKAFDELEILDPT  493 (557)
T ss_pred             HHHHHHHHHhhhHHHccCCC
Confidence            77766666666666554433

>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif)

Probab=98.52  E-value=2.4e-07  Score=47.47  Aligned_cols=33  Identities=42%  Similarity=0.852  Sum_probs=26.6

Q ss_pred             hHHHHHHHHHccCcHHHHHHHHHHHHHcCCCCc
Q 021791          227 SYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQ  259 (307)
Q Consensus       227 ~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~  259 (307)
                      +|+.+|.+|++.|++++|.++|++|.+.|+.||
T Consensus         2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~   34 (35)
T TIGR00756         2 TYNTLIDGLCKAGRVEEALELFKEMLERGIEPD   34 (35)
T ss_pred             cHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence            677888888888888888888888888887776

This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.

>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]

Probab=98.52  E-value=0.00016  Score=60.81  Aligned_cols=242  Identities=7%  Similarity=0.039  Sum_probs=126.6

Q ss_pred             HHHHHHHHHHhcCchhhHHHHHHHHHhcCCCCcHHHHHHHHHHHHhhCCCCcchhhHHHHHHHHHHHHHHHhcCCCCCHH
Q 021791            6 MYTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPNERFEKTIRNAEKVFDEMRVRGIEPDVT   85 (307)
Q Consensus         6 ~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~   85 (307)
                      .|..++.+| ..+++.+.++..+.+.+. .+-...|....--.+..          .|+-++|......-....+. +.+
T Consensus        10 lF~~~lk~y-E~kQYkkgLK~~~~iL~k-~~eHgeslAmkGL~L~~----------lg~~~ea~~~vr~glr~d~~-S~v   76 (700)
T KOG1156|consen   10 LFRRALKCY-ETKQYKKGLKLIKQILKK-FPEHGESLAMKGLTLNC----------LGKKEEAYELVRLGLRNDLK-SHV   76 (700)
T ss_pred             HHHHHHHHH-HHHHHHhHHHHHHHHHHh-CCccchhHHhccchhhc----------ccchHHHHHHHHHHhccCcc-cch
Confidence            344444444 456677777777766653 22222333222222222          45556666665555443322 555


Q ss_pred             HHHHHHHHHHhcCCchhHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHh
Q 021791           86 SFSIVLHVYSRAHKPQLSLDKLNFMKEKGICPTVATYTSVVKCLCSCGRIEDAEELLGEMVRNGVSPSAETYNCFFKEYR  165 (307)
Q Consensus        86 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~  165 (307)
                      .|..+.-.+-...++++|++.|......+.. |...+.-+.-.=++.++++.......+..+.... ....|..+..++.
T Consensus        77 CwHv~gl~~R~dK~Y~eaiKcy~nAl~~~~d-N~qilrDlslLQ~QmRd~~~~~~tr~~LLql~~~-~ra~w~~~Avs~~  154 (700)
T KOG1156|consen   77 CWHVLGLLQRSDKKYDEAIKCYRNALKIEKD-NLQILRDLSLLQIQMRDYEGYLETRNQLLQLRPS-QRASWIGFAVAQH  154 (700)
T ss_pred             hHHHHHHHHhhhhhHHHHHHHHHHHHhcCCC-cHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhh-hHHHHHHHHHHHH
Confidence            6666666666666677777777776665432 4555554444445666666666666665554221 3455666666666


Q ss_pred             cCCChhHHHHHHHHHhhcCCCCccHHHHHHHH------HHHHhcCcHHHHHHHHHHHhhCCCCCCHHhH-HHHHHHHHcc
Q 021791          166 GRKDANGAMKLYRQMKEDDLCVPNIHTYNILI------GMFMALNRMDMVREIWNHVKGSELGLDLDSY-TMLIHGLCEK  238 (307)
Q Consensus       166 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~------~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~-~~li~~~~~~  238 (307)
                      -.|+...|..++++........|+...+....      ......|..+.|.+.+......  ..|...+ ..-...+.+.
T Consensus       155 L~g~y~~A~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~--i~Dkla~~e~ka~l~~kl  232 (700)
T KOG1156|consen  155 LLGEYKMALEILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQ--IVDKLAFEETKADLLMKL  232 (700)
T ss_pred             HHHHHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhH--HHHHHHHhhhHHHHHHHH
Confidence            66777777777766665542234444443222      1223445555555554443332  1122222 2233445566


Q ss_pred             CcHHHHHHHHHHHHHcCCCCcHhhHHHH
Q 021791          239 QKWKEACQYFVEMIEKGLLPQKVTFETL  266 (307)
Q Consensus       239 g~~~~a~~~~~~~~~~~~~p~~~~~~~l  266 (307)
                      +++++|..++..++..  .||..-|...
T Consensus       233 ~~lEeA~~~y~~Ll~r--nPdn~~Yy~~  258 (700)
T KOG1156|consen  233 GQLEEAVKVYRRLLER--NPDNLDYYEG  258 (700)
T ss_pred             hhHHhHHHHHHHHHhh--CchhHHHHHH
Confidence            6667777777766655  3454444333

>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional

Probab=98.52  E-value=5.5e-05  Score=67.50  Aligned_cols=219  Identities=11%  Similarity=0.084  Sum_probs=137.7

Q ss_pred             cCCCC-cHHHHHHHHHHHHhhCCCCcchhhHHHHHHHHHHHHHHHhcCCCCCHH-HHHHHHHHHHhcCCchhHHHH----
Q 021791           33 RGVEP-NVVTYNVLLNGVCRRASLHPNERFEKTIRNAEKVFDEMRVRGIEPDVT-SFSIVLHVYSRAHKPQLSLDK----  106 (307)
Q Consensus        33 ~~~~p-~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~ll~~~~~~~~~~~a~~~----  106 (307)
                      .+..| +...+..|+..+..          .+++++|.++.+...+.  .|+.. .|-.+...+.+.++...+..+    
T Consensus        24 ~~~~p~n~~a~~~Li~~~~~----------~~~~deai~i~~~~l~~--~P~~i~~yy~~G~l~~q~~~~~~~~lv~~l~   91 (906)
T PRK14720         24 NNYSLSKFKELDDLIDAYKS----------ENLTDEAKDICEEHLKE--HKKSISALYISGILSLSRRPLNDSNLLNLID   91 (906)
T ss_pred             ccCCcchHHHHHHHHHHHHh----------cCCHHHHHHHHHHHHHh--CCcceehHHHHHHHHHhhcchhhhhhhhhhh
Confidence            34555 45688999998888          78899999999977665  34433 333333355555555554444    


Q ss_pred             --------------HHHHHHcCCCCchhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHhcCCChhH
Q 021791          107 --------------LNFMKEKGICPTVATYTSVVKCLCSCGRIEDAEELLGEMVRNGVSPSAETYNCFFKEYRGRKDANG  172 (307)
Q Consensus       107 --------------~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  172 (307)
                                    ...+...+  -+...+..+..+|-+.|+.++|..+|+++.+..+. |+.+.|.+...|... ++++
T Consensus        92 ~~~~~~~~~~ve~~~~~i~~~~--~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~-n~~aLNn~AY~~ae~-dL~K  167 (906)
T PRK14720         92 SFSQNLKWAIVEHICDKILLYG--ENKLALRTLAEAYAKLNENKKLKGVWERLVKADRD-NPEIVKKLATSYEEE-DKEK  167 (906)
T ss_pred             hcccccchhHHHHHHHHHHhhh--hhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHh-hHHH
Confidence                          22222211  12356677888888889999999999999988744 788888888888888 9999


Q ss_pred             HHHHHHHHhhcCCCCccHHHHHHHHHH---HH--hcCcHHHHHHHHHHHhhC-CCCCCHHhHHHHHHHHHccCcHHHHHH
Q 021791          173 AMKLYRQMKEDDLCVPNIHTYNILIGM---FM--ALNRMDMVREIWNHVKGS-ELGLDLDSYTMLIHGLCEKQKWKEACQ  246 (307)
Q Consensus       173 a~~~~~~~~~~~~~~~~~~~~~~l~~~---~~--~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~li~~~~~~g~~~~a~~  246 (307)
                      |..++.+......   +..-|+.+...   ++  ...+.+.-..+.+.+... +..--..++-.+-..|-..++|+++..
T Consensus       168 A~~m~~KAV~~~i---~~kq~~~~~e~W~k~~~~~~~d~d~f~~i~~ki~~~~~~~~~~~~~~~l~~~y~~~~~~~~~i~  244 (906)
T PRK14720        168 AITYLKKAIYRFI---KKKQYVGIEEIWSKLVHYNSDDFDFFLRIERKVLGHREFTRLVGLLEDLYEPYKALEDWDEVIY  244 (906)
T ss_pred             HHHHHHHHHHHHH---hhhcchHHHHHHHHHHhcCcccchHHHHHHHHHHhhhccchhHHHHHHHHHHHhhhhhhhHHHH
Confidence            9988888765411   11112211111   11  122333333444444332 222233455566677788888999999


Q ss_pred             HHHHHHHcCCCCcHhhHHHHHHHHh
Q 021791          247 YFVEMIEKGLLPQKVTFETLYRGLI  271 (307)
Q Consensus       247 ~~~~~~~~~~~p~~~~~~~l~~~~~  271 (307)
                      +++.+++.. +-|.....-++.+|.
T Consensus       245 iLK~iL~~~-~~n~~a~~~l~~~y~  268 (906)
T PRK14720        245 ILKKILEHD-NKNNKAREELIRFYK  268 (906)
T ss_pred             HHHHHHhcC-CcchhhHHHHHHHHH
Confidence            999998763 335556666776665

>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms

Probab=98.51  E-value=4e-06  Score=68.50  Aligned_cols=132  Identities=12%  Similarity=0.110  Sum_probs=105.7

Q ss_pred             HHHHHHhc---CCCCcHHHHHHHHHHHHhhCCCCcchhhHHHHHHHHHHHHHHHhc--CCCCCHHHHHHHHHHHHhcCCc
Q 021791           26 FLGEMIER---GVEPNVVTYNVLLNGVCRRASLHPNERFEKTIRNAEKVFDEMRVR--GIEPDVTSFSIVLHVYSRAHKP  100 (307)
Q Consensus        26 ~~~~~~~~---~~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~ll~~~~~~~~~  100 (307)
                      ++..|.+.   +.+.+......++..+..          ..+++++..++-+....  ....-..|..++++.|...|..
T Consensus        50 ~~~~l~~k~~~~~~vS~~dld~fvn~~~~----------~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~  119 (429)
T PF10037_consen   50 LYSELDKKFERKKPVSSLDLDIFVNNVES----------KDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAE  119 (429)
T ss_pred             HHHHHHHHHhcCCCCcHHHHHHHHhhcCC----------HhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCH
Confidence            44444332   445577778888887777          78889999998888766  2223344567999999999999


Q ss_pred             hhHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHhcC
Q 021791          101 QLSLDKLNFMKEKGICPTVATYTSVVKCLCSCGRIEDAEELLGEMVRNGVSPSAETYNCFFKEYRGR  167 (307)
Q Consensus       101 ~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  167 (307)
                      +.++.++..=...|+-||..+++.+|..+.+.|++..|.++...|...+...+..|+...+.+|.+-
T Consensus       120 ~~~l~~L~n~~~yGiF~D~~s~n~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~  186 (429)
T PF10037_consen  120 DELLELLKNRLQYGIFPDNFSFNLLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY  186 (429)
T ss_pred             HHHHHHHhChhhcccCCChhhHHHHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence            9999999999999999999999999999999999999999999988777666777777777666555

The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].

>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function

Probab=98.49  E-value=2.3e-05  Score=55.16  Aligned_cols=117  Identities=12%  Similarity=0.147  Sum_probs=73.1

Q ss_pred             hcCCchhHHHHHHHHHHcCCCC--chhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCC--HhhHHHHHHHHhcCCChh
Q 021791           96 RAHKPQLSLDKLNFMKEKGICP--TVATYTSVVKCLCSCGRIEDAEELLGEMVRNGVSPS--AETYNCFFKEYRGRKDAN  171 (307)
Q Consensus        96 ~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~  171 (307)
                      ..++...+...++.+.......  .....-.+...+...|++++|...|+.+......|+  ......+...+...|+++
T Consensus        23 ~~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~~~d  102 (145)
T PF09976_consen   23 QAGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILLQQGQYD  102 (145)
T ss_pred             HCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHH
Confidence            3666777777777776653221  122333455667777888888888887777653222  123444566677777777


Q ss_pred             HHHHHHHHHhhcCCCCccHHHHHHHHHHHHhcCcHHHHHHHHHH
Q 021791          172 GAMKLYRQMKEDDLCVPNIHTYNILIGMFMALNRMDMVREIWNH  215 (307)
Q Consensus       172 ~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~  215 (307)
                      +|+..++.....   ......+......+.+.|++++|...|+.
T Consensus       103 ~Al~~L~~~~~~---~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~  143 (145)
T PF09976_consen  103 EALATLQQIPDE---AFKALAAELLGDIYLAQGDYDEARAAYQK  143 (145)
T ss_pred             HHHHHHHhccCc---chHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence            777777664332   33445566677777777777777777765

>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.48  E-value=0.00042  Score=57.83  Aligned_cols=121  Identities=11%  Similarity=0.019  Sum_probs=65.8

Q ss_pred             HHHHHhcCchhhHHHHHHHHHhcCCCCcHHHHHHHHHHHHhhCCCCcchhhHHHHHHHHHHHHHHHhcCCCCCHHHHHHH
Q 021791           11 IYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPNERFEKTIRNAEKVFDEMRVRGIEPDVTSFSIV   90 (307)
Q Consensus        11 i~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l   90 (307)
                      ++-+...|++++|....+.++..+ +-+...+..=+-+..+          .+.+++|+++.+.-...  ..+..-+-.=
T Consensus        19 ln~~~~~~e~e~a~k~~~Kil~~~-pdd~~a~~cKvValIq----------~~ky~~ALk~ikk~~~~--~~~~~~~fEK   85 (652)
T KOG2376|consen   19 LNRHGKNGEYEEAVKTANKILSIV-PDDEDAIRCKVVALIQ----------LDKYEDALKLIKKNGAL--LVINSFFFEK   85 (652)
T ss_pred             HHHhccchHHHHHHHHHHHHHhcC-CCcHhhHhhhHhhhhh----------hhHHHHHHHHHHhcchh--hhcchhhHHH
Confidence            455667788999999999998775 3344555555556777          67777777554432211  1111111111


Q ss_pred             HHHHHhcCCchhHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 021791           91 LHVYSRAHKPQLSLDKLNFMKEKGICPTVATYTSVVKCLCSCGRIEDAEELLGEMVRN  148 (307)
Q Consensus        91 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~  148 (307)
                      .-+..+.+..++|+..++-..+.    |..+...-...+.+.|++++|+.+|+.+.++
T Consensus        86 AYc~Yrlnk~Dealk~~~~~~~~----~~~ll~L~AQvlYrl~~ydealdiY~~L~kn  139 (652)
T KOG2376|consen   86 AYCEYRLNKLDEALKTLKGLDRL----DDKLLELRAQVLYRLERYDEALDIYQHLAKN  139 (652)
T ss_pred             HHHHHHcccHHHHHHHHhccccc----chHHHHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence            22333556666666666522111    2224444445556666666666666666443

>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends

Probab=98.47  E-value=1.3e-05  Score=51.73  Aligned_cols=87  Identities=20%  Similarity=0.388  Sum_probs=71.5

Q ss_pred             HHHHHHHHhcCchhhHHHHHHHHHhcCC-CCcHHHHHHHHHHHHhhCCCCcchhhHHHHHHHHHHHHHHHhcCCCCCHHH
Q 021791            8 TSLIYGWCKINRIDMAERFLGEMIERGV-EPNVVTYNVLLNGVCRRASLHPNERFEKTIRNAEKVFDEMRVRGIEPDVTS   86 (307)
Q Consensus         8 ~~li~~~~~~g~~~~a~~~~~~~~~~~~-~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~   86 (307)
                      ..-|..+...++++..-.+|+.++..|+ .|+..+|+.++.+.++.. .+. .....++-+.+.+|++|...+++|+..+
T Consensus        29 i~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~-lD~-~~ie~kl~~LLtvYqDiL~~~lKP~~et  106 (120)
T PF08579_consen   29 IDNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRE-LDS-EDIENKLTNLLTVYQDILSNKLKPNDET  106 (120)
T ss_pred             HHHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHcc-ccc-hhHHHHHHHHHHHHHHHHHhccCCcHHH
Confidence            3456677778999999999999999999 899999999999988742 111 3335677888899999999999999999


Q ss_pred             HHHHHHHHHh
Q 021791           87 FSIVLHVYSR   96 (307)
Q Consensus        87 ~~~ll~~~~~   96 (307)
                      |+.++..+.+
T Consensus       107 Ynivl~~Llk  116 (120)
T PF08579_consen  107 YNIVLGSLLK  116 (120)
T ss_pred             HHHHHHHHHH
Confidence            9998887754

Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].

>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]

Probab=98.46  E-value=0.00062  Score=57.49  Aligned_cols=94  Identities=12%  Similarity=0.119  Sum_probs=56.6

Q ss_pred             HHHHHHHhcCcHHHHHHHHHHHhhCCCCCCH-HhHHHHHHHHHccCcHHHHHHHHHHHHHcCCCCcHhhHHHHHHHHhhc
Q 021791          195 ILIGMFMALNRMDMVREIWNHVKGSELGLDL-DSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQS  273 (307)
Q Consensus       195 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~  273 (307)
                      .+++.+-..|+++.|...++....+  .|+. ..|..=.+.+...|+.++|..++++..+.. .||...-.--..-..+.
T Consensus       376 ~laqh~D~~g~~~~A~~yId~AIdH--TPTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD-~aDR~INsKcAKYmLrA  452 (700)
T KOG1156|consen  376 FLAQHYDKLGDYEVALEYIDLAIDH--TPTLIELYLVKARIFKHAGLLDEAAAWLDEAQELD-TADRAINSKCAKYMLRA  452 (700)
T ss_pred             HHHHHHHHcccHHHHHHHHHHHhcc--CchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhcc-chhHHHHHHHHHHHHHc
Confidence            4555666677777777777776654  3332 234444566667777777777777776553 23433333344455566


Q ss_pred             hhHHHHHHHHHHhhhcCC
Q 021791          274 DMLRTWRRLKKKLDEESI  291 (307)
Q Consensus       274 g~~~~a~~~~~~~~~~~~  291 (307)
                      ++.++|.++..+..+.|.
T Consensus       453 n~i~eA~~~~skFTr~~~  470 (700)
T KOG1156|consen  453 NEIEEAEEVLSKFTREGF  470 (700)
T ss_pred             cccHHHHHHHHHhhhccc
Confidence            777777777777766654

>KOG3785 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.46  E-value=9.3e-05  Score=57.89  Aligned_cols=221  Identities=11%  Similarity=0.098  Sum_probs=144.0

Q ss_pred             HHHHHHhcCchhhHHHHHHHHHhcCCCCcHHHHHHHHHHHHhhCCCCcchhhHHHHHHHHHHHHHHHhcCCCCCH-HHHH
Q 021791           10 LIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPNERFEKTIRNAEKVFDEMRVRGIEPDV-TSFS   88 (307)
Q Consensus        10 li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~   88 (307)
                      |+-.|.+.+++++|..+..++.-  ..|-......+.  .+..|+-..+   ...+.-|.+.|.-.-+.+..-|. .--.
T Consensus       291 L~iYyL~q~dVqeA~~L~Kdl~P--ttP~EyilKgvv--~aalGQe~gS---reHlKiAqqffqlVG~Sa~ecDTIpGRQ  363 (557)
T KOG3785|consen  291 LIIYYLNQNDVQEAISLCKDLDP--TTPYEYILKGVV--FAALGQETGS---REHLKIAQQFFQLVGESALECDTIPGRQ  363 (557)
T ss_pred             heeeecccccHHHHHHHHhhcCC--CChHHHHHHHHH--HHHhhhhcCc---HHHHHHHHHHHHHhcccccccccccchH
Confidence            55567889999999988776632  133333322222  2222322111   45566677777665555433332 2345


Q ss_pred             HHHHHHHhcCCchhHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHhhH-HHHHHHHhcC
Q 021791           89 IVLHVYSRAHKPQLSLDKLNFMKEKGICPTVATYTSVVKCLCSCGRIEDAEELLGEMVRNGVSPSAETY-NCFFKEYRGR  167 (307)
Q Consensus        89 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~-~~l~~~~~~~  167 (307)
                      ++.+++.-..++++++-.+..+...=.. |...--.+..+++..|++.+|+++|-++....++ |..+| ..+.++|.+.
T Consensus       364 smAs~fFL~~qFddVl~YlnSi~sYF~N-dD~Fn~N~AQAk~atgny~eaEelf~~is~~~ik-n~~~Y~s~LArCyi~n  441 (557)
T KOG3785|consen  364 SMASYFFLSFQFDDVLTYLNSIESYFTN-DDDFNLNLAQAKLATGNYVEAEELFIRISGPEIK-NKILYKSMLARCYIRN  441 (557)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhcC-cchhhhHHHHHHHHhcChHHHHHHHhhhcChhhh-hhHHHHHHHHHHHHhc
Confidence            6677777777889999888888776433 3333345889999999999999999888776666 55555 4556789999


Q ss_pred             CChhHHHHHHHHHhhcCCCCccHH-HHHHHHHHHHhcCcHHHHHHHHHHHhhCCCCCCHHhHHHHHHHHHccCcHHHHHH
Q 021791          168 KDANGAMKLYRQMKEDDLCVPNIH-TYNILIGMFMALNRMDMVREIWNHVKGSELGLDLDSYTMLIHGLCEKQKWKEACQ  246 (307)
Q Consensus       168 ~~~~~a~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~  246 (307)
                      +.++.|.+++-.+..    +.+.. ....+.+-|.+.+.+--|-+.|+.+...  .|++..|         .|+-.....
T Consensus       442 kkP~lAW~~~lk~~t----~~e~fsLLqlIAn~CYk~~eFyyaaKAFd~lE~l--DP~pEnW---------eGKRGACaG  506 (557)
T KOG3785|consen  442 KKPQLAWDMMLKTNT----PSERFSLLQLIANDCYKANEFYYAAKAFDELEIL--DPTPENW---------EGKRGACAG  506 (557)
T ss_pred             CCchHHHHHHHhcCC----chhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHcc--CCCcccc---------CCccchHHH
Confidence            999999888766543    22333 3445567788999999999999998876  4565554         244444555


Q ss_pred             HHHHHHHc
Q 021791          247 YFVEMIEK  254 (307)
Q Consensus       247 ~~~~~~~~  254 (307)
                      +|..+...
T Consensus       507 ~f~~l~~~  514 (557)
T KOG3785|consen  507 LFRQLANH  514 (557)
T ss_pred             HHHHHHcC
Confidence            66655544

>PF13812 PPR_3: Pentatricopeptide repeat domain

Probab=98.45  E-value=3.9e-07  Score=46.34  Aligned_cols=33  Identities=30%  Similarity=0.452  Sum_probs=20.8

Q ss_pred             HhHHHHHHHHHccCcHHHHHHHHHHHHHcCCCC
Q 021791          226 DSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLP  258 (307)
Q Consensus       226 ~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p  258 (307)
                      .+|+.++.+|++.|+++.|..+|++|.+.|++|
T Consensus         2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P   34 (34)
T PF13812_consen    2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP   34 (34)
T ss_pred             cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence            356666666666666666666666666666655

>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms

Probab=98.45  E-value=5.8e-06  Score=67.54  Aligned_cols=125  Identities=14%  Similarity=0.137  Sum_probs=97.5

Q ss_pred             CCCCCHhhHHHHHHHHhcCCChhHHHHHHHHHhhcCCC-CccHHHHHHHHHHHHhcCcHHHHHHHHHHHhhCCCCCCHHh
Q 021791          149 GVSPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDDLC-VPNIHTYNILIGMFMALNRMDMVREIWNHVKGSELGLDLDS  227 (307)
Q Consensus       149 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~  227 (307)
                      +.+.+......++..+....+.+.+..++.+....... ..-..|..++++.|...|..+.+.++++.=...|+-||..+
T Consensus        61 ~~~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s  140 (429)
T PF10037_consen   61 KKPVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFS  140 (429)
T ss_pred             CCCCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhh
Confidence            34456677777888888888888888888887766321 12234556889999999999999999888888899999999


Q ss_pred             HHHHHHHHHccCcHHHHHHHHHHHHHcCCCCcHhhHHHHHHHHhhc
Q 021791          228 YTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQS  273 (307)
Q Consensus       228 ~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~  273 (307)
                      +|.++..+.+.|++..|.++...|..++...+..|+...+.+|.+.
T Consensus       141 ~n~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~  186 (429)
T PF10037_consen  141 FNLLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY  186 (429)
T ss_pred             HHHHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence            9999999999999999999988888887777777777666666655

The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].

>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]

Probab=98.44  E-value=0.00053  Score=59.00  Aligned_cols=231  Identities=13%  Similarity=0.144  Sum_probs=157.8

Q ss_pred             HHHHHHhcCchhhHHHHHHHHHhcCCCCcHHHHHHHHHHHHhhCCCCcchhhHHHHHHHHHHHHHHHhc-CC--------
Q 021791           10 LIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPNERFEKTIRNAEKVFDEMRVR-GI--------   80 (307)
Q Consensus        10 li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~-~~--------   80 (307)
                      +.--|+..++.+.|.+...+..+-+-.-+...|..|.-.+..          .+++.+|+.+.+..... |.        
T Consensus       484 lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa----------~kr~~~Al~vvd~al~E~~~N~~l~~~~  553 (799)
T KOG4162|consen  484 LALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSA----------QKRLKEALDVVDAALEEFGDNHVLMDGK  553 (799)
T ss_pred             HHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhh----------hhhhHHHHHHHHHHHHHhhhhhhhchhh
Confidence            344566677888888888888777556677777777776766          66777777777665443 11        


Q ss_pred             ----------CCCHHHHHHHHHHHHh-----------------------cCCchhHHHHHHHHH--------HcC-----
Q 021791           81 ----------EPDVTSFSIVLHVYSR-----------------------AHKPQLSLDKLNFMK--------EKG-----  114 (307)
Q Consensus        81 ----------~~~~~~~~~ll~~~~~-----------------------~~~~~~a~~~~~~~~--------~~~-----  114 (307)
                                .-...|+..++..+-.                       .++..++.+....+.        ..|     
T Consensus       554 ~~i~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~~~~~~~se~~L  633 (799)
T KOG4162|consen  554 IHIELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVASQLKSAGSELKL  633 (799)
T ss_pred             hhhhhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHHHHHhhhhhccccccc
Confidence                      0011223333322220                       011112222211110        011     


Q ss_pred             ----CC--Cc------hhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHhcCCChhHHHHHHHHHhh
Q 021791          115 ----IC--PT------VATYTSVVKCLCSCGRIEDAEELLGEMVRNGVSPSAETYNCFFKEYRGRKDANGAMKLYRQMKE  182 (307)
Q Consensus       115 ----~~--~~------~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~  182 (307)
                          ..  |+      ...|......+.+.+..++|...+.+..... ......|......+...|+.++|...|.....
T Consensus       634 p~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~~-~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~  712 (799)
T KOG4162|consen  634 PSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKID-PLSASVYYLRGLLLEVKGQLEEAKEAFLVALA  712 (799)
T ss_pred             CcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhcc-hhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHh
Confidence                00  11      1234455566778888888888888877653 33666777777888899999999999999988


Q ss_pred             cCCCCccHHHHHHHHHHHHhcCcHHHHHH--HHHHHhhCCCCCCHHhHHHHHHHHHccCcHHHHHHHHHHHHHc
Q 021791          183 DDLCVPNIHTYNILIGMFMALNRMDMVRE--IWNHVKGSELGLDLDSYTMLIHGLCEKQKWKEACQYFVEMIEK  254 (307)
Q Consensus       183 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~~--~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~  254 (307)
                      .+  |.++...+++...+.+.|+...|.+  ++..+.+.+.. +...|-.+...+-+.|+.++|.+.|....+.
T Consensus       713 ld--P~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp~-n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~qL  783 (799)
T KOG4162|consen  713 LD--PDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLDPL-NHEAWYYLGEVFKKLGDSKQAAECFQAALQL  783 (799)
T ss_pred             cC--CCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCCC-CHHHHHHHHHHHHHccchHHHHHHHHHHHhh
Confidence            76  6778899999999999999888888  99999988643 8899999999999999999999999988765

>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]

Probab=98.43  E-value=0.00057  Score=55.83  Aligned_cols=186  Identities=14%  Similarity=0.031  Sum_probs=133.1

Q ss_pred             HHHHHHHHHHHHHHHhcC--CCCCHHHHHHHHHHHHhcCCchhHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCChHHHH
Q 021791           62 EKTIRNAEKVFDEMRVRG--IEPDVTSFSIVLHVYSRAHKPQLSLDKLNFMKEKGICPTVATYTSVVKCLCSCGRIEDAE  139 (307)
Q Consensus        62 ~~~~~~a~~~~~~~~~~~--~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~  139 (307)
                      ..++.++...-+++...+  -.|+.......+.+......-..+..++.+..+.  .-...-|.. ...+...|++++|+
T Consensus       250 ~~RIa~lr~ra~q~p~~~~~d~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~--~~~aa~YG~-A~~~~~~~~~d~A~  326 (484)
T COG4783         250 EERIADLRNRAEQSPPYNKLDSPDFQLARARIRAKYEALPNQQAADLLAKRSKR--GGLAAQYGR-ALQTYLAGQYDEAL  326 (484)
T ss_pred             hhHHHHHHHHHHhCCCCCCCCCccHHHHHHHHHHHhccccccchHHHHHHHhCc--cchHHHHHH-HHHHHHhcccchHH
Confidence            455666666666665432  3455566666666554444333333333333331  112233333 33456789999999


Q ss_pred             HHHHHHHhCCCCCCHhhHHHHHHHHhcCCChhHHHHHHHHHhhcCCCCccHHHHHHHHHHHHhcCcHHHHHHHHHHHhhC
Q 021791          140 ELLGEMVRNGVSPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDDLCVPNIHTYNILIGMFMALNRMDMVREIWNHVKGS  219 (307)
Q Consensus       140 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~  219 (307)
                      ..++.+...-+ -|+..+......+...++.++|.+.++.+....  +......-.+.+++.+.|+..+|+.+++.....
T Consensus       327 ~~l~~L~~~~P-~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~--P~~~~l~~~~a~all~~g~~~eai~~L~~~~~~  403 (484)
T COG4783         327 KLLQPLIAAQP-DNPYYLELAGDILLEANKAKEAIERLKKALALD--PNSPLLQLNLAQALLKGGKPQEAIRILNRYLFN  403 (484)
T ss_pred             HHHHHHHHhCC-CCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcC--CCccHHHHHHHHHHHhcCChHHHHHHHHHHhhc
Confidence            99999887643 367777788889999999999999999999884  333667778899999999999999999998877


Q ss_pred             CCCCCHHhHHHHHHHHHccCcHHHHHHHHHHHHHc
Q 021791          220 ELGLDLDSYTMLIHGLCEKQKWKEACQYFVEMIEK  254 (307)
Q Consensus       220 ~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~  254 (307)
                      . +-|+..|..|.++|...|+..++.....+....
T Consensus       404 ~-p~dp~~w~~LAqay~~~g~~~~a~~A~AE~~~~  437 (484)
T COG4783         404 D-PEDPNGWDLLAQAYAELGNRAEALLARAEGYAL  437 (484)
T ss_pred             C-CCCchHHHHHHHHHHHhCchHHHHHHHHHHHHh
Confidence            4 448899999999999999999998888776544

>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.43  E-value=4.9e-05  Score=56.93  Aligned_cols=174  Identities=13%  Similarity=0.130  Sum_probs=126.5

Q ss_pred             HHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCchhHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 021791           69 EKVFDEMRVRGIEPDVTSFSIVLHVYSRAHKPQLSLDKLNFMKEKGICPTVATYTSVVKCLCSCGRIEDAEELLGEMVRN  148 (307)
Q Consensus        69 ~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~  148 (307)
                      .++.+.+.......+......-...|...|++++|++..+...      +......=+..+.+..+++-|...+++|.+.
T Consensus        93 ~~l~E~~a~~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~~~------~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~i  166 (299)
T KOG3081|consen   93 ASLYELVADSTDGSNLIDLLLAAIIYMHDGDFDEALKALHLGE------NLEAAALNVQILLKMHRFDLAEKELKKMQQI  166 (299)
T ss_pred             HHHHHHHHhhccchhHHHHHHhhHHhhcCCChHHHHHHHhccc------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence            3445555555444454555556667899999999999887621      3334444456677888999999999999985


Q ss_pred             CCCCCHhhHHHHHHHHh----cCCChhHHHHHHHHHhhcCCCCccHHHHHHHHHHHHhcCcHHHHHHHHHHHhhCCCCCC
Q 021791          149 GVSPSAETYNCFFKEYR----GRKDANGAMKLYRQMKEDDLCVPNIHTYNILIGMFMALNRMDMVREIWNHVKGSELGLD  224 (307)
Q Consensus       149 ~~~~~~~~~~~l~~~~~----~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~  224 (307)
                      .   +..|.+.|..++.    ..+....|+-+|+++.+.-  +|++.+.+-...++...|++++|..+++....+... +
T Consensus       167 d---ed~tLtQLA~awv~la~ggek~qdAfyifeE~s~k~--~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~-d  240 (299)
T KOG3081|consen  167 D---EDATLTQLAQAWVKLATGGEKIQDAFYIFEELSEKT--PPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAK-D  240 (299)
T ss_pred             c---hHHHHHHHHHHHHHHhccchhhhhHHHHHHHHhccc--CCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCC-C
Confidence            2   5567766666654    4567899999999999865  799999999999999999999999999999988654 6


Q ss_pred             HHhHHHHHHHHHccCcH-HHHHHHHHHHHHc
Q 021791          225 LDSYTMLIHGLCEKQKW-KEACQYFVEMIEK  254 (307)
Q Consensus       225 ~~~~~~li~~~~~~g~~-~~a~~~~~~~~~~  254 (307)
                      +.+...++-+-...|.. +-..+.+.++...
T Consensus       241 petL~Nliv~a~~~Gkd~~~~~r~l~QLk~~  271 (299)
T KOG3081|consen  241 PETLANLIVLALHLGKDAEVTERNLSQLKLS  271 (299)
T ss_pred             HHHHHHHHHHHHHhCCChHHHHHHHHHHHhc
Confidence            77766666655555554 4445555665543

>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function

Probab=98.41  E-value=3.3e-05  Score=54.32  Aligned_cols=115  Identities=13%  Similarity=0.029  Sum_probs=58.0

Q ss_pred             CCChhHHHHHHHHHhhcCCCCcc---HHHHHHHHHHHHhcCcHHHHHHHHHHHhhCCCCCCH--HhHHHHHHHHHccCcH
Q 021791          167 RKDANGAMKLYRQMKEDDLCVPN---IHTYNILIGMFMALNRMDMVREIWNHVKGSELGLDL--DSYTMLIHGLCEKQKW  241 (307)
Q Consensus       167 ~~~~~~a~~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~li~~~~~~g~~  241 (307)
                      .++...+...++.+....  +.+   ....-.+...+...|++++|...|+.+......|+.  .....+...+...|++
T Consensus        24 ~~~~~~~~~~~~~l~~~~--~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~~~  101 (145)
T PF09976_consen   24 AGDPAKAEAAAEQLAKDY--PSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILLQQGQY  101 (145)
T ss_pred             CCCHHHHHHHHHHHHHHC--CCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCH
Confidence            555555555555555543  122   122233445555566666666666666654322221  1233345555666666


Q ss_pred             HHHHHHHHHHHHcCCCCcHhhHHHHHHHHhhchhHHHHHHHHHH
Q 021791          242 KEACQYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKK  285 (307)
Q Consensus       242 ~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~  285 (307)
                      ++|+..++......  ..+..+......+...|+.++|+..|++
T Consensus       102 d~Al~~L~~~~~~~--~~~~~~~~~Gdi~~~~g~~~~A~~~y~~  143 (145)
T PF09976_consen  102 DEALATLQQIPDEA--FKALAAELLGDIYLAQGDYDEARAAYQK  143 (145)
T ss_pred             HHHHHHHHhccCcc--hHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence            66666665432221  2233444455566666666666666554

>PRK04841 transcriptional regulator MalT; Provisional

Probab=98.38  E-value=0.0011  Score=61.66  Aligned_cols=270  Identities=10%  Similarity=-0.009  Sum_probs=165.9

Q ss_pred             HHHHHHhcCchhhHHHHHHHHHhcC--C----CCcHHHHHHHH--HHHHhhCCCCcchhhHHHHHHHHHHHHHHHhcCCC
Q 021791           10 LIYGWCKINRIDMAERFLGEMIERG--V----EPNVVTYNVLL--NGVCRRASLHPNERFEKTIRNAEKVFDEMRVRGIE   81 (307)
Q Consensus        10 li~~~~~~g~~~~a~~~~~~~~~~~--~----~p~~~~~~~ll--~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~   81 (307)
                      ....+...|++++|...+......-  .    .+....-...+  ..+..          .|++++|...+++..+.-..
T Consensus       415 ~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~----------~g~~~~A~~~~~~al~~~~~  484 (903)
T PRK04841        415 QAWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAIN----------DGDPEEAERLAELALAELPL  484 (903)
T ss_pred             HHHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHHh----------CCCHHHHHHHHHHHHhcCCC
Confidence            3445567789999999888775431  1    11111111111  12223          67788898888887653111


Q ss_pred             CC----HHHHHHHHHHHHhcCCchhHHHHHHHHHHc----CC-CCchhhHHHHHHHHHhcCChHHHHHHHHHHHhC----
Q 021791           82 PD----VTSFSIVLHVYSRAHKPQLSLDKLNFMKEK----GI-CPTVATYTSVVKCLCSCGRIEDAEELLGEMVRN----  148 (307)
Q Consensus        82 ~~----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~----~~-~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~----  148 (307)
                      .+    ....+.+...+...|+++.|...+++....    |. .....++..+...+...|++++|...+++....    
T Consensus       485 ~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~  564 (903)
T PRK04841        485 TWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQ  564 (903)
T ss_pred             ccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHh
Confidence            12    124456666778899999999999887643    21 111234556677788999999999998876542    


Q ss_pred             CCC--C-CHhhHHHHHHHHhcCCChhHHHHHHHHHhhcCC---CCccHHHHHHHHHHHHhcCcHHHHHHHHHHHhhCCCC
Q 021791          149 GVS--P-SAETYNCFFKEYRGRKDANGAMKLYRQMKEDDL---CVPNIHTYNILIGMFMALNRMDMVREIWNHVKGSELG  222 (307)
Q Consensus       149 ~~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~---~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~  222 (307)
                      +..  + ....+..+...+...|++++|...+.+......   .......+..+...+...|+.+.|...+.........
T Consensus       565 ~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~  644 (903)
T PRK04841        565 HLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLARGDLDNARRYLNRLENLLGN  644 (903)
T ss_pred             ccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhc
Confidence            211  1 123344555667778999999999988755311   0112344555677788899999999998887542111


Q ss_pred             C-CHHhH-----HHHHHHHHccCcHHHHHHHHHHHHHcCCCCcH---hhHHHHHHHHhhchhHHHHHHHHHHhhhc
Q 021791          223 L-DLDSY-----TMLIHGLCEKQKWKEACQYFVEMIEKGLLPQK---VTFETLYRGLIQSDMLRTWRRLKKKLDEE  289 (307)
Q Consensus       223 ~-~~~~~-----~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~---~~~~~l~~~~~~~g~~~~a~~~~~~~~~~  289 (307)
                      . ....+     ...+..+...|+.+.|..++............   ..+..+..++...|+.++|...+++....
T Consensus       645 ~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~~al~~  720 (903)
T PRK04841        645 GRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQILLGQFDEAEIILEELNEN  720 (903)
T ss_pred             ccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence            0 11111     11224445688999999998775532111111   11345667788899999999999887553

>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]

Probab=98.37  E-value=0.0012  Score=57.91  Aligned_cols=227  Identities=12%  Similarity=0.101  Sum_probs=151.3

Q ss_pred             HHhcCchhhHHHHHHHHHhcCCCCcHHHHHHHHHHHHhhCCCCcchhhHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHH
Q 021791           14 WCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPNERFEKTIRNAEKVFDEMRVRGIEPDVTSFSIVLHV   93 (307)
Q Consensus        14 ~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~   93 (307)
                      ....+++.+|+.-...+.++  -|+. .|...+.++....        .|+.++|..+++.....+.. |..|...+-.+
T Consensus        19 ~ld~~qfkkal~~~~kllkk--~Pn~-~~a~vLkaLsl~r--------~gk~~ea~~~Le~~~~~~~~-D~~tLq~l~~~   86 (932)
T KOG2053|consen   19 LLDSSQFKKALAKLGKLLKK--HPNA-LYAKVLKALSLFR--------LGKGDEALKLLEALYGLKGT-DDLTLQFLQNV   86 (932)
T ss_pred             HhhhHHHHHHHHHHHHHHHH--CCCc-HHHHHHHHHHHHH--------hcCchhHHHHHhhhccCCCC-chHHHHHHHHH
Confidence            34678899999999998876  3444 4455555555432        78889999888888776555 88899999999


Q ss_pred             HHhcCCchhHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHhcCC-Ch--
Q 021791           94 YSRAHKPQLSLDKLNFMKEKGICPTVATYTSVVKCLCSCGRIEDAEELLGEMVRNGVSPSAETYNCFFKEYRGRK-DA--  170 (307)
Q Consensus        94 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~--  170 (307)
                      |.+.++.+++..+|+...+.  .|+..-...+..+|.+.+.+.+--++--++-+. .+-+...+-.+++.+...- .+  
T Consensus        87 y~d~~~~d~~~~~Ye~~~~~--~P~eell~~lFmayvR~~~yk~qQkaa~~LyK~-~pk~~yyfWsV~Slilqs~~~~~~  163 (932)
T KOG2053|consen   87 YRDLGKLDEAVHLYERANQK--YPSEELLYHLFMAYVREKSYKKQQKAALQLYKN-FPKRAYYFWSVISLILQSIFSENE  163 (932)
T ss_pred             HHHHhhhhHHHHHHHHHHhh--CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCcccchHHHHHHHHHHhccCCcc
Confidence            99999999999999999876  467777788888999988877643333333222 2224444445554443321 11  


Q ss_pred             -------hHHHHHHHHHhhcCCCCccHHHHHHHHHHHHhcCcHHHHHHHHHH-HhhCCCCCCHHhHHHHHHHHHccCcHH
Q 021791          171 -------NGAMKLYRQMKEDDLCVPNIHTYNILIGMFMALNRMDMVREIWNH-VKGSELGLDLDSYTMLIHGLCEKQKWK  242 (307)
Q Consensus       171 -------~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~-~~~~~~~~~~~~~~~li~~~~~~g~~~  242 (307)
                             .-|.+.++.+.+.++...+..-...-...+...|++++|.+++.. ..+.-..-+...-+.-+..+...++|.
T Consensus       164 ~~~~i~l~LA~~m~~~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~  243 (932)
T KOG2053|consen  164 LLDPILLALAEKMVQKLLEKKGKIESEAEIILYLLILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQ  243 (932)
T ss_pred             cccchhHHHHHHHHHHHhccCCccchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChH
Confidence                   235666666666542122222223333445568889999999843 333322334444556677778888999


Q ss_pred             HHHHHHHHHHHcC
Q 021791          243 EACQYFVEMIEKG  255 (307)
Q Consensus       243 ~a~~~~~~~~~~~  255 (307)
                      +..++-.++...|
T Consensus       244 ~l~~l~~~Ll~k~  256 (932)
T KOG2053|consen  244 ELFELSSRLLEKG  256 (932)
T ss_pred             HHHHHHHHHHHhC
Confidence            9999999888876

>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends

Probab=98.34  E-value=1.5e-05  Score=51.40  Aligned_cols=80  Identities=18%  Similarity=0.269  Sum_probs=63.9

Q ss_pred             HHHHHHHHHhcCCchhHHHHHHHHHHcCC-CCchhhHHHHHHHHHhcC--------ChHHHHHHHHHHHhCCCCCCHhhH
Q 021791           87 FSIVLHVYSRAHKPQLSLDKLNFMKEKGI-CPTVATYTSVVKCLCSCG--------RIEDAEELLGEMVRNGVSPSAETY  157 (307)
Q Consensus        87 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~ll~~~~~~~--------~~~~a~~~~~~~~~~~~~~~~~~~  157 (307)
                      -...|..+...+++.....+|+.+++.|+ .|+..+|+.++.+.+++.        .+...+.+|+.|...+++|+..+|
T Consensus        28 ~i~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etY  107 (120)
T PF08579_consen   28 QIDNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETY  107 (120)
T ss_pred             HHHHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHH
Confidence            34455566666899999999999999998 889999999998877654        244578888888888899999999


Q ss_pred             HHHHHHHhc
Q 021791          158 NCFFKEYRG  166 (307)
Q Consensus       158 ~~l~~~~~~  166 (307)
                      +.++..+.+
T Consensus       108 nivl~~Llk  116 (120)
T PF08579_consen  108 NIVLGSLLK  116 (120)
T ss_pred             HHHHHHHHH
Confidence            988877654

Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].

>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]

Probab=98.33  E-value=0.00074  Score=59.92  Aligned_cols=218  Identities=11%  Similarity=0.024  Sum_probs=151.8

Q ss_pred             HHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCchhHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCChHHHHHH
Q 021791           62 EKTIRNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHKPQLSLDKLNFMKEKGICPTVATYTSVVKCLCSCGRIEDAEEL  141 (307)
Q Consensus        62 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~  141 (307)
                      .++...++..|-+..+.. +.=...|..|...|....+...|.+.|....+.+.. +..........|++..+++.|..+
T Consensus       471 rK~~~~al~ali~alrld-~~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLDat-daeaaaa~adtyae~~~we~a~~I  548 (1238)
T KOG1127|consen  471 RKNSALALHALIRALRLD-VSLAPAFAFLGQIYRDSDDMKRAKKCFDKAFELDAT-DAEAAAASADTYAEESTWEEAFEI  548 (1238)
T ss_pred             hhhHHHHHHHHHHHHhcc-cchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCch-hhhhHHHHHHHhhccccHHHHHHH
Confidence            344556666665555542 113457888888898888889999999999887643 778888999999999999999988


Q ss_pred             HHHHHhCCCC-CCHhhHHHHHHHHhcCCChhHHHHHHHHHhhcCCCCccHHHHHHHHHHHHhcCcHHHHHHHHHHHhhCC
Q 021791          142 LGEMVRNGVS-PSAETYNCFFKEYRGRKDANGAMKLYRQMKEDDLCVPNIHTYNILIGMFMALNRMDMVREIWNHVKGSE  220 (307)
Q Consensus       142 ~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~  220 (307)
                      .-..-+.... .-...|....-.|...++...+..-|+...+..  +.|...|..+.++|.++|++..|.++|.++... 
T Consensus       549 ~l~~~qka~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~d--PkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~L-  625 (1238)
T KOG1127|consen  549 CLRAAQKAPAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRTD--PKDYNLWLGLGEAYPESGRYSHALKVFTKASLL-  625 (1238)
T ss_pred             HHHHhhhchHHHHHhhhhhccccccCccchhhHHHHHHHHhcCC--chhHHHHHHHHHHHHhcCceehHHHhhhhhHhc-
Confidence            4433332111 112223334445778889999999999988886  788999999999999999999999999988875 


Q ss_pred             CCCCHHhHHHH--HHHHHccCcHHHHHHHHHHHHHc------CCCCcHhhHHHHHHHHhhchhHHHHHHHHHHh
Q 021791          221 LGLDLDSYTML--IHGLCEKQKWKEACQYFVEMIEK------GLLPQKVTFETLYRGLIQSDMLRTWRRLKKKL  286 (307)
Q Consensus       221 ~~~~~~~~~~l--i~~~~~~g~~~~a~~~~~~~~~~------~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~  286 (307)
                       .|+. .|...  .-.-+..|.+++|+..+...+..      +...-..++..+...+.-.|-..++..++++-
T Consensus       626 -rP~s-~y~~fk~A~~ecd~GkYkeald~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~eks  697 (1238)
T KOG1127|consen  626 -RPLS-KYGRFKEAVMECDNGKYKEALDALGLIIYAFSLERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEKS  697 (1238)
T ss_pred             -CcHh-HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHH
Confidence             3332 33322  22346789999999999887654      22233445555555555556555555555543

>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat

Probab=98.32  E-value=7.4e-07  Score=44.18  Aligned_cols=31  Identities=42%  Similarity=0.769  Sum_probs=28.8

Q ss_pred             HHHHHHHHHHHhcCchhhHHHHHHHHHhcCC
Q 021791            5 KMYTSLIYGWCKINRIDMAERFLGEMIERGV   35 (307)
Q Consensus         5 ~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~   35 (307)
                      ++||.+|++|++.|++++|.++|++|.+.|+
T Consensus         1 v~y~~li~~~~~~~~~~~a~~~~~~M~~~g~   31 (31)
T PF01535_consen    1 VTYNSLISGYCKMGQFEEALEVFDEMRERGI   31 (31)
T ss_pred             CcHHHHHHHHHccchHHHHHHHHHHHhHCcC
Confidence            4799999999999999999999999998864

Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.

>PRK10866 outer membrane biogenesis protein BamD; Provisional

Probab=98.28  E-value=0.00077  Score=51.74  Aligned_cols=184  Identities=7%  Similarity=0.056  Sum_probs=114.4

Q ss_pred             HHHHHHHHHHHHhcCCchhHHHHHHHHHHcCCCCchhhH---HHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHhhHHHH
Q 021791           84 VTSFSIVLHVYSRAHKPQLSLDKLNFMKEKGICPTVATY---TSVVKCLCSCGRIEDAEELLGEMVRNGVSPSAETYNCF  160 (307)
Q Consensus        84 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~---~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l  160 (307)
                      ...+-.....+...|++++|.+.|+.+...-.. +...-   -.+..++.+.+++++|...+++..+..+.-....+...
T Consensus        32 ~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP~-s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~Y  110 (243)
T PRK10866         32 PSEIYATAQQKLQDGNWKQAITQLEALDNRYPF-GPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVLY  110 (243)
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHHH
Confidence            333334455566788999999999998876433 22222   34667788899999999999998876443223333333


Q ss_pred             HHHHhc--CC---------------C---hhHHHHHHHHHhhcCCCCccHHHHHHHHHHHHhcCcHHHHHHHHHHHhhCC
Q 021791          161 FKEYRG--RK---------------D---ANGAMKLYRQMKEDDLCVPNIHTYNILIGMFMALNRMDMVREIWNHVKGSE  220 (307)
Q Consensus       161 ~~~~~~--~~---------------~---~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~  220 (307)
                      +.+.+.  .+               +   ..+|+..|+.+.+.   -|+             ..-..+|...+..+... 
T Consensus       111 ~~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~---yP~-------------S~ya~~A~~rl~~l~~~-  173 (243)
T PRK10866        111 MRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRG---YPN-------------SQYTTDATKRLVFLKDR-  173 (243)
T ss_pred             HHHHhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHH---CcC-------------ChhHHHHHHHHHHHHHH-
Confidence            333321  11               1   12344444444444   233             33345555544444432 


Q ss_pred             CCCCHHhHHHHHHHHHccCcHHHHHHHHHHHHHc--CCCCcHhhHHHHHHHHhhchhHHHHHHHHHHhhh
Q 021791          221 LGLDLDSYTMLIHGLCEKQKWKEACQYFVEMIEK--GLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDE  288 (307)
Q Consensus       221 ~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~--~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~  288 (307)
                         =...--.+..-|.+.|.+..|..-++.+++.  +.+........+..+|...|..++|..+.+.+..
T Consensus       174 ---la~~e~~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l~~  240 (243)
T PRK10866        174 ---LAKYELSVAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKIIAA  240 (243)
T ss_pred             ---HHHHHHHHHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHHhc
Confidence               1111124566788999999999999999986  3344455677888999999999999998877644

>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.28  E-value=0.00067  Score=60.38  Aligned_cols=175  Identities=10%  Similarity=0.126  Sum_probs=85.7

Q ss_pred             HHHHHHHHHHHHhcCCchhHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHhhHHHHHHH
Q 021791           84 VTSFSIVLHVYSRAHKPQLSLDKLNFMKEKGICPTVATYTSVVKCLCSCGRIEDAEELLGEMVRNGVSPSAETYNCFFKE  163 (307)
Q Consensus        84 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~  163 (307)
                      +.+|..+..+-.+.|...+|++-|-+.      -|+..|..++....+.|.+++-...+.-..+....|...  +.++-+
T Consensus      1104 p~vWsqlakAQL~~~~v~dAieSyika------dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~id--~eLi~A 1175 (1666)
T KOG0985|consen 1104 PAVWSQLAKAQLQGGLVKDAIESYIKA------DDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREPYID--SELIFA 1175 (1666)
T ss_pred             hHHHHHHHHHHHhcCchHHHHHHHHhc------CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCccch--HHHHHH
Confidence            344555555555555555554443221      144455555555555555555555555444443333332  234555


Q ss_pred             HhcCCChhHHHHHHHHHhhcCCCCccHH--------------------------HHHHHHHHHHhcCcHHHHHHHHHHHh
Q 021791          164 YRGRKDANGAMKLYRQMKEDDLCVPNIH--------------------------TYNILIGMFMALNRMDMVREIWNHVK  217 (307)
Q Consensus       164 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~--------------------------~~~~l~~~~~~~~~~~~a~~~~~~~~  217 (307)
                      |++.++..+..+++.        .||..                          -|..|...+...|++..|...-++..
T Consensus      1176 yAkt~rl~elE~fi~--------gpN~A~i~~vGdrcf~~~~y~aAkl~y~~vSN~a~La~TLV~LgeyQ~AVD~aRKAn 1247 (1666)
T KOG0985|consen 1176 YAKTNRLTELEEFIA--------GPNVANIQQVGDRCFEEKMYEAAKLLYSNVSNFAKLASTLVYLGEYQGAVDAARKAN 1247 (1666)
T ss_pred             HHHhchHHHHHHHhc--------CCCchhHHHHhHHHhhhhhhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence            555555544333321        22222                          33444444444455544444333221


Q ss_pred             hCCCCCCHHhHHHHHHHHHccCcHHHHHHHHHHHHHcCCCCcHhhHHHHHHHHhhchhHHHHHHHHHH
Q 021791          218 GSELGLDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKK  285 (307)
Q Consensus       218 ~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~  285 (307)
                            +..+|..+-.+|...+.+.-|     +|...++...+.-..-++.-|-..|-+++...+++.
T Consensus      1248 ------s~ktWK~VcfaCvd~~EFrlA-----QiCGL~iivhadeLeeli~~Yq~rGyFeElIsl~Ea 1304 (1666)
T KOG0985|consen 1248 ------STKTWKEVCFACVDKEEFRLA-----QICGLNIIVHADELEELIEYYQDRGYFEELISLLEA 1304 (1666)
T ss_pred             ------chhHHHHHHHHHhchhhhhHH-----HhcCceEEEehHhHHHHHHHHHhcCcHHHHHHHHHh
Confidence                  445555555555554443322     232223334445566777777777777777776654

>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]

Probab=98.24  E-value=0.00043  Score=60.21  Aligned_cols=210  Identities=14%  Similarity=0.148  Sum_probs=124.1

Q ss_pred             cHHHHHHHHHHHHhcCchhhHHHHHHHHHhc-CC--------CCcH-HHHHHHHHHHHhhCCCCcchhhHHHHHHHHHHH
Q 021791            3 NVKMYTSLIYGWCKINRIDMAERFLGEMIER-GV--------EPNV-VTYNVLLNGVCRRASLHPNERFEKTIRNAEKVF   72 (307)
Q Consensus         3 ~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~-~~--------~p~~-~~~~~ll~~~~~~~~~~~~~~~~~~~~~a~~~~   72 (307)
                      +-.+|..+.+.|.+.++.+-|.-.+..|... |.        .|+. ..-.+.+  ...          .|.+++|+.+|
T Consensus       756 S~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~~~e~eakvAvL--Aie----------LgMlEeA~~lY  823 (1416)
T KOG3617|consen  756 SDSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQNGEEDEAKVAVL--AIE----------LGMLEEALILY  823 (1416)
T ss_pred             hhHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhCCcchhhHHHHH--HHH----------HhhHHHHHHHH
Confidence            4456777777777777777777777666542 11        1211 1111111  122          67778888888


Q ss_pred             HHHHhcCCCCCHHHHHHHHHHHHhcCCchhHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCChHHHHHHHHHHHhC----
Q 021791           73 DEMRVRGIEPDVTSFSIVLHVYSRAHKPQLSLDKLNFMKEKGICPTVATYTSVVKCLCSCGRIEDAEELLGEMVRN----  148 (307)
Q Consensus        73 ~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~----  148 (307)
                      .+-...         ..|=..|-..|.|++|.++-+.=.+..+   ..||......+-..++.+.|++.|++....    
T Consensus       824 r~ckR~---------DLlNKlyQs~g~w~eA~eiAE~~DRiHL---r~Tyy~yA~~Lear~Di~~AleyyEK~~~hafev  891 (1416)
T KOG3617|consen  824 RQCKRY---------DLLNKLYQSQGMWSEAFEIAETKDRIHL---RNTYYNYAKYLEARRDIEAALEYYEKAGVHAFEV  891 (1416)
T ss_pred             HHHHHH---------HHHHHHHHhcccHHHHHHHHhhccceeh---hhhHHHHHHHHHhhccHHHHHHHHHhcCChHHHH
Confidence            776643         2344456667888888777655433322   235555555666677777777776653211    


Q ss_pred             ------C---------CCCCHhhHHHHHHHHhcCCChhHHHHHHHHHhhcCCCCccHHHHHHHHHHHHhcCcHHHHHHHH
Q 021791          149 ------G---------VSPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDDLCVPNIHTYNILIGMFMALNRMDMVREIW  213 (307)
Q Consensus       149 ------~---------~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~  213 (307)
                            .         -..|...|..........|+.+.|+.++.....          |-++++..|-.|+.++|.++-
T Consensus       892 ~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D----------~fs~VrI~C~qGk~~kAa~iA  961 (1416)
T KOG3617|consen  892 FRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAKD----------YFSMVRIKCIQGKTDKAARIA  961 (1416)
T ss_pred             HHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhhh----------hhhheeeEeeccCchHHHHHH
Confidence                  0         112444555555555566666666666655432          334555566677777777665


Q ss_pred             HHHhhCCCCCCHHhHHHHHHHHHccCcHHHHHHHHHHHH
Q 021791          214 NHVKGSELGLDLDSYTMLIHGLCEKQKWKEACQYFVEMI  252 (307)
Q Consensus       214 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~  252 (307)
                      ++-.      |....-.+.+.|-..|++.+|...|.+..
T Consensus       962 ~esg------d~AAcYhlaR~YEn~g~v~~Av~FfTrAq  994 (1416)
T KOG3617|consen  962 EESG------DKAACYHLARMYENDGDVVKAVKFFTRAQ  994 (1416)
T ss_pred             Hhcc------cHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence            5332      55666677888888888888888887664

>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]

Probab=98.23  E-value=0.0013  Score=54.29  Aligned_cols=237  Identities=12%  Similarity=0.064  Sum_probs=146.4

Q ss_pred             HHHHHHHHHhcCchhhHHHHHHHHHhcCCCCcHHHHHHHHHHHHhhCCCCcchhhHHHHHHHHHHHHHHHhcCCCCCHHH
Q 021791            7 YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPNERFEKTIRNAEKVFDEMRVRGIEPDVTS   86 (307)
Q Consensus         7 ~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~   86 (307)
                      +..+..+.-+..+++.|++-+.......  -+..-++..-.++..          .+.+.+....-+...+.|-. ...-
T Consensus       227 ek~lgnaaykkk~f~~a~q~y~~a~el~--~~it~~~n~aA~~~e----------~~~~~~c~~~c~~a~E~gre-~rad  293 (539)
T KOG0548|consen  227 EKELGNAAYKKKDFETAIQHYAKALELA--TDITYLNNIAAVYLE----------RGKYAECIELCEKAVEVGRE-LRAD  293 (539)
T ss_pred             HHHHHHHHHHhhhHHHHHHHHHHHHhHh--hhhHHHHHHHHHHHh----------ccHHHHhhcchHHHHHHhHH-HHHH
Confidence            3456667777788888888888877764  344455555556666          55555555555555544422 2222


Q ss_pred             HHHH-------HHHHHhcCCchhHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHhhHHH
Q 021791           87 FSIV-------LHVYSRAHKPQLSLDKLNFMKEKGICPTVATYTSVVKCLCSCGRIEDAEELLGEMVRNGVSPSAETYNC  159 (307)
Q Consensus        87 ~~~l-------l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~  159 (307)
                      |+.+       ..++.+.++.+.+++.|.+.......|+         ...+....+++....+...-.+...-. -...
T Consensus       294 ~klIak~~~r~g~a~~k~~~~~~ai~~~~kaLte~Rt~~---------~ls~lk~~Ek~~k~~e~~a~~~pe~A~-e~r~  363 (539)
T KOG0548|consen  294 YKLIAKALARLGNAYTKREDYEGAIKYYQKALTEHRTPD---------LLSKLKEAEKALKEAERKAYINPEKAE-EERE  363 (539)
T ss_pred             HHHHHHHHHHhhhhhhhHHhHHHHHHHHHHHhhhhcCHH---------HHHHHHHHHHHHHHHHHHHhhChhHHH-HHHH
Confidence            3333       3345556677888888877655433332         223344455555555544443322211 1222


Q ss_pred             HHHHHhcCCChhHHHHHHHHHhhcCCCCccHHHHHHHHHHHHhcCcHHHHHHHHHHHhhCCCCCCHHhHHHHHHHHHccC
Q 021791          160 FFKEYRGRKDANGAMKLYRQMKEDDLCVPNIHTYNILIGMFMALNRMDMVREIWNHVKGSELGLDLDSYTMLIHGLCEKQ  239 (307)
Q Consensus       160 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g  239 (307)
                      -...+.+.|++..|...|.++.+..  +.|...|....-+|.+.|.+..|++-.+...+.+ ++....|..=..++....
T Consensus       364 kGne~Fk~gdy~~Av~~YteAIkr~--P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~-p~~~kgy~RKg~al~~mk  440 (539)
T KOG0548|consen  364 KGNEAFKKGDYPEAVKHYTEAIKRD--PEDARLYSNRAACYLKLGEYPEALKDAKKCIELD-PNFIKAYLRKGAALRAMK  440 (539)
T ss_pred             HHHHHHhccCHHHHHHHHHHHHhcC--CchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-chHHHHHHHHHHHHHHHH
Confidence            2556778899999999999988886  7788889999999999999998888877777763 223444555555555667


Q ss_pred             cHHHHHHHHHHHHHcCCCCcHhhHHHHHHHHh
Q 021791          240 KWKEACQYFVEMIEKGLLPQKVTFETLYRGLI  271 (307)
Q Consensus       240 ~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~  271 (307)
                      ++++|.+.|++.++..  |+..-+.--+.-|.
T Consensus       441 ~ydkAleay~eale~d--p~~~e~~~~~~rc~  470 (539)
T KOG0548|consen  441 EYDKALEAYQEALELD--PSNAEAIDGYRRCV  470 (539)
T ss_pred             HHHHHHHHHHHHHhcC--chhHHHHHHHHHHH
Confidence            8888888888887653  55444433333333

>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]

Probab=98.23  E-value=0.0031  Score=55.47  Aligned_cols=221  Identities=14%  Similarity=0.108  Sum_probs=145.5

Q ss_pred             HHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHH--HHhcCCchhHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCChHHHH
Q 021791           62 EKTIRNAEKVFDEMRVRGIEPDVTSFSIVLHV--YSRAHKPQLSLDKLNFMKEKGICPTVATYTSVVKCLCSCGRIEDAE  139 (307)
Q Consensus        62 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~--~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~  139 (307)
                      .+++.+|.+....+.+.  -|+. .|...+.+  ..+.|..++|..+++.....+.. |..|...+-.+|...++.++|.
T Consensus        22 ~~qfkkal~~~~kllkk--~Pn~-~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~-D~~tLq~l~~~y~d~~~~d~~~   97 (932)
T KOG2053|consen   22 SSQFKKALAKLGKLLKK--HPNA-LYAKVLKALSLFRLGKGDEALKLLEALYGLKGT-DDLTLQFLQNVYRDLGKLDEAV   97 (932)
T ss_pred             hHHHHHHHHHHHHHHHH--CCCc-HHHHHHHHHHHHHhcCchhHHHHHhhhccCCCC-chHHHHHHHHHHHHHhhhhHHH
Confidence            57788898888888776  3444 23344444  45789999999999988877666 8999999999999999999999


Q ss_pred             HHHHHHHhCCCCCCHhhHHHHHHHHhcCCChhHHHHHHHHHhhcCCCCccHHHHHHHHHHHHhcC----------cHHHH
Q 021791          140 ELLGEMVRNGVSPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDDLCVPNIHTYNILIGMFMALN----------RMDMV  209 (307)
Q Consensus       140 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~----------~~~~a  209 (307)
                      .+|++....  -|+......+..+|.+.+++.+-.+.--++.+.-  +-+...|-++++......          -..-|
T Consensus        98 ~~Ye~~~~~--~P~eell~~lFmayvR~~~yk~qQkaa~~LyK~~--pk~~yyfWsV~Slilqs~~~~~~~~~~i~l~LA  173 (932)
T KOG2053|consen   98 HLYERANQK--YPSEELLYHLFMAYVREKSYKKQQKAALQLYKNF--PKRAYYFWSVISLILQSIFSENELLDPILLALA  173 (932)
T ss_pred             HHHHHHHhh--CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC--CcccchHHHHHHHHHHhccCCcccccchhHHHH
Confidence            999999876  4667788888888999888876555555555432  445566666666655432          13456


Q ss_pred             HHHHHHHhhCCCC-CCHHhHHHHHHHHHccCcHHHHHHHHH-HHHHcCCCCcHhhHHHHHHHHhhchhHHHHHHHHHHhh
Q 021791          210 REIWNHVKGSELG-LDLDSYTMLIHGLCEKQKWKEACQYFV-EMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLD  287 (307)
Q Consensus       210 ~~~~~~~~~~~~~-~~~~~~~~li~~~~~~g~~~~a~~~~~-~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~  287 (307)
                      .+.++.+.+.+.+ -+..-.......+-..|++++|.+++. ...+.-..-+...-+.-+..+...+++.+..++..++.
T Consensus       174 ~~m~~~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~l~~~Ll  253 (932)
T KOG2053|consen  174 EKMVQKLLEKKGKIESEAEIILYLLILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFELSSRLL  253 (932)
T ss_pred             HHHHHHHhccCCccchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHHHHHHHH
Confidence            6666766665411 122223333344557888999999994 33333222222222334455556666666665555554


Q ss_pred             hcC
Q 021791          288 EES  290 (307)
Q Consensus       288 ~~~  290 (307)
                      ..+
T Consensus       254 ~k~  256 (932)
T KOG2053|consen  254 EKG  256 (932)
T ss_pred             HhC
Confidence            443

>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]

Probab=98.21  E-value=0.0015  Score=51.25  Aligned_cols=222  Identities=15%  Similarity=0.102  Sum_probs=160.0

Q ss_pred             HHHHHHHHHHHHHHHhcCCCCC------------HHH--HHHHHHHHHhcCCchhHHHHHHHHHHcCCCCchhhHHHHHH
Q 021791           62 EKTIRNAEKVFDEMRVRGIEPD------------VTS--FSIVLHVYSRAHKPQLSLDKLNFMKEKGICPTVATYTSVVK  127 (307)
Q Consensus        62 ~~~~~~a~~~~~~~~~~~~~~~------------~~~--~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~  127 (307)
                      .|.+++|..=|+...+.....+            ...  ....+..+...|+...++..+..+.+..+- |...+..-..
T Consensus       119 ~Gele~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~~W-da~l~~~Rak  197 (504)
T KOG0624|consen  119 QGELEQAEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEIQPW-DASLRQARAK  197 (504)
T ss_pred             cccHHHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhcCcc-hhHHHHHHHH
Confidence            6888999999999887732111            111  223344566788999999999999988543 8888889999


Q ss_pred             HHHhcCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHhcCCChhHHHHHHHHHhhcCCCCccHHH-H---H-------HH
Q 021791          128 CLCSCGRIEDAEELLGEMVRNGVSPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDDLCVPNIHT-Y---N-------IL  196 (307)
Q Consensus       128 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~-~---~-------~l  196 (307)
                      +|...|++..|+.=++...+..- .+..++-.+-..+...|+.+.++...++..+.+   ||... |   .       .|
T Consensus       198 c~i~~~e~k~AI~Dlk~askLs~-DnTe~~ykis~L~Y~vgd~~~sL~~iRECLKld---pdHK~Cf~~YKklkKv~K~l  273 (504)
T KOG0624|consen  198 CYIAEGEPKKAIHDLKQASKLSQ-DNTEGHYKISQLLYTVGDAENSLKEIRECLKLD---PDHKLCFPFYKKLKKVVKSL  273 (504)
T ss_pred             HHHhcCcHHHHHHHHHHHHhccc-cchHHHHHHHHHHHhhhhHHHHHHHHHHHHccC---cchhhHHHHHHHHHHHHHHH
Confidence            99999999999888877766533 366777778888889999999999999988774   44322 2   1       11


Q ss_pred             --HHHHHhcCcHHHHHHHHHHHhhCCCCCCH---HhHHHHHHHHHccCcHHHHHHHHHHHHHcCCCCc-HhhHHHHHHHH
Q 021791          197 --IGMFMALNRMDMVREIWNHVKGSELGLDL---DSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQ-KVTFETLYRGL  270 (307)
Q Consensus       197 --~~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~-~~~~~~l~~~~  270 (307)
                        +......++|-++.+-.+...+.......   ..+..+-.++...|++.+|+....+.++.  .|| ..++.-=..+|
T Consensus       274 es~e~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~~--d~~dv~~l~dRAeA~  351 (504)
T KOG0624|consen  274 ESAEQAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLDI--DPDDVQVLCDRAEAY  351 (504)
T ss_pred             HHHHHHHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeecccccCCHHHHHHHHHHHHhc--CchHHHHHHHHHHHH
Confidence              12233556777777777777665433122   23455667778889999999999999864  454 77887778888


Q ss_pred             hhchhHHHHHHHHHHhhhcC
Q 021791          271 IQSDMLRTWRRLKKKLDEES  290 (307)
Q Consensus       271 ~~~g~~~~a~~~~~~~~~~~  290 (307)
                      .-...++.|..=|++..+.+
T Consensus       352 l~dE~YD~AI~dye~A~e~n  371 (504)
T KOG0624|consen  352 LGDEMYDDAIHDYEKALELN  371 (504)
T ss_pred             hhhHHHHHHHHHHHHHHhcC
Confidence            88888888888888776544

>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C

Probab=98.17  E-value=5.6e-05  Score=48.40  Aligned_cols=23  Identities=13%  Similarity=0.209  Sum_probs=9.0

Q ss_pred             HHHHHHHHhcCcHHHHHHHHHHH
Q 021791          194 NILIGMFMALNRMDMVREIWNHV  216 (307)
Q Consensus       194 ~~l~~~~~~~~~~~~a~~~~~~~  216 (307)
                      ..+...+...+++++|.+.++..
T Consensus        38 ~~~~~~~~~~~~~~~a~~~~~~~   60 (100)
T cd00189          38 YNLAAAYYKLGKYEEALEDYEKA   60 (100)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHH
Confidence            33333333334444444444333

>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF

Probab=98.17  E-value=0.00014  Score=49.10  Aligned_cols=97  Identities=9%  Similarity=-0.019  Sum_probs=45.4

Q ss_pred             HHHHHHHHHhcCCchhHHHHHHHHHHcCCC--CchhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCC--CCHhhHHHHHH
Q 021791           87 FSIVLHVYSRAHKPQLSLDKLNFMKEKGIC--PTVATYTSVVKCLCSCGRIEDAEELLGEMVRNGVS--PSAETYNCFFK  162 (307)
Q Consensus        87 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~l~~  162 (307)
                      +..+...+.+.|++++|.+.+..+.+....  .....+..+..++.+.|++++|...|+.+......  .....+..+..
T Consensus         5 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~   84 (119)
T TIGR02795         5 YYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLGM   84 (119)
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHHH
Confidence            334444455555555555555555443211  01223444555555555555555555555443211  11233444444


Q ss_pred             HHhcCCChhHHHHHHHHHhhc
Q 021791          163 EYRGRKDANGAMKLYRQMKED  183 (307)
Q Consensus       163 ~~~~~~~~~~a~~~~~~~~~~  183 (307)
                      ++.+.|++++|...++++...
T Consensus        85 ~~~~~~~~~~A~~~~~~~~~~  105 (119)
T TIGR02795        85 SLQELGDKEKAKATLQQVIKR  105 (119)
T ss_pred             HHHHhCChHHHHHHHHHHHHH
Confidence            555555555555555555544

Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.

>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat

Probab=98.16  E-value=3.8e-06  Score=41.54  Aligned_cols=29  Identities=41%  Similarity=0.770  Sum_probs=16.7

Q ss_pred             hHHHHHHHHHccCcHHHHHHHHHHHHHcC
Q 021791          227 SYTMLIHGLCEKQKWKEACQYFVEMIEKG  255 (307)
Q Consensus       227 ~~~~li~~~~~~g~~~~a~~~~~~~~~~~  255 (307)
                      +|+.++++|++.|++++|.++|++|.+.|
T Consensus         2 ~y~~li~~~~~~~~~~~a~~~~~~M~~~g   30 (31)
T PF01535_consen    2 TYNSLISGYCKMGQFEEALEVFDEMRERG   30 (31)
T ss_pred             cHHHHHHHHHccchHHHHHHHHHHHhHCc
Confidence            45555555555555555555555555544

Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.

>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C

Probab=98.16  E-value=6.9e-05  Score=47.95  Aligned_cols=93  Identities=16%  Similarity=0.170  Sum_probs=47.8

Q ss_pred             HHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHhcCCChhHHHHHHHHHhhcCCCCccHHHHHHHHHHHHh
Q 021791          123 TSVVKCLCSCGRIEDAEELLGEMVRNGVSPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDDLCVPNIHTYNILIGMFMA  202 (307)
Q Consensus       123 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~  202 (307)
                      ..+...+...|++++|...+++..+.... +...+..+...+...+++++|...+.......  +.+..++..+...+..
T Consensus         4 ~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~~~~~~~   80 (100)
T cd00189           4 LNLGNLYYKLGDYDEALEYYEKALELDPD-NADAYYNLAAAYYKLGKYEEALEDYEKALELD--PDNAKAYYNLGLAYYK   80 (100)
T ss_pred             HHHHHHHHHHhcHHHHHHHHHHHHhcCCc-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC--CcchhHHHHHHHHHHH
Confidence            33444455555555555555555543221 23444445555555555666666555555443  2333455555555555


Q ss_pred             cCcHHHHHHHHHHHhh
Q 021791          203 LNRMDMVREIWNHVKG  218 (307)
Q Consensus       203 ~~~~~~a~~~~~~~~~  218 (307)
                      .|+++.|...+.....
T Consensus        81 ~~~~~~a~~~~~~~~~   96 (100)
T cd00189          81 LGKYEEALEAYEKALE   96 (100)
T ss_pred             HHhHHHHHHHHHHHHc
Confidence            5555555555555443

>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses

Probab=98.15  E-value=8.9e-05  Score=54.13  Aligned_cols=96  Identities=19%  Similarity=0.340  Sum_probs=67.3

Q ss_pred             cHHHHHHHHHHHHhc-----CchhhHHHHHHHHHhcCCCCcHHHHHHHHHHHHhhCCCCcchhh-------HHHHHHHHH
Q 021791            3 NVKMYTSLIYGWCKI-----NRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPNERF-------EKTIRNAEK   70 (307)
Q Consensus         3 ~~~~~~~li~~~~~~-----g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~~-------~~~~~~a~~   70 (307)
                      |-.+|..+++.|.+.     |..+-....+..|.+-|+.-|..+|+.||+.+=+ |.+.....+       ..+.+-|++
T Consensus        46 ~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPK-g~fvp~n~fQ~~F~hyp~Qq~c~i~  124 (228)
T PF06239_consen   46 DKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPK-GKFVPRNFFQAEFMHYPRQQECAID  124 (228)
T ss_pred             cHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCC-CCcccccHHHHHhccCcHHHHHHHH
Confidence            567888888888765     6778888889999999999999999999998776 433322221       344455666


Q ss_pred             HHHHHHhcCCCCCHHHHHHHHHHHHhcCC
Q 021791           71 VFDEMRVRGIEPDVTSFSIVLHVYSRAHK   99 (307)
Q Consensus        71 ~~~~~~~~~~~~~~~~~~~ll~~~~~~~~   99 (307)
                      ++++|...|+.||..++..++..+.+.+.
T Consensus       125 lL~qME~~gV~Pd~Et~~~ll~iFG~~s~  153 (228)
T PF06239_consen  125 LLEQMENNGVMPDKETEQMLLNIFGRKSH  153 (228)
T ss_pred             HHHHHHHcCCCCcHHHHHHHHHHhccccH
Confidence            66666666666666666666666655543

ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].

>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins

Probab=98.15  E-value=0.00015  Score=56.96  Aligned_cols=129  Identities=12%  Similarity=0.149  Sum_probs=54.4

Q ss_pred             hHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHhhHHHHHHH-HhcCCChhHHHHHHHHHhhcCCCCccHHHHHHHHHH
Q 021791          121 TYTSVVKCLCSCGRIEDAEELLGEMVRNGVSPSAETYNCFFKE-YRGRKDANGAMKLYRQMKEDDLCVPNIHTYNILIGM  199 (307)
Q Consensus       121 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~  199 (307)
                      +|..+++..-+.+..+.|..+|.+..+.+. .+...|...... |...++.+.|..+|+...+.-  +.+...|...+..
T Consensus         3 v~i~~m~~~~r~~g~~~aR~vF~~a~~~~~-~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f--~~~~~~~~~Y~~~   79 (280)
T PF05843_consen    3 VWIQYMRFMRRTEGIEAARKVFKRARKDKR-CTYHVYVAYALMEYYCNKDPKRARKIFERGLKKF--PSDPDFWLEYLDF   79 (280)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHCCCC-S-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHH--TT-HHHHHHHHHH
T ss_pred             HHHHHHHHHHHhCChHHHHHHHHHHHcCCC-CCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHC--CCCHHHHHHHHHH
Confidence            344444444444445555555555543211 122223222222 222334444555555554442  3344444444555


Q ss_pred             HHhcCcHHHHHHHHHHHhhCCCCCCH---HhHHHHHHHHHccCcHHHHHHHHHHHHH
Q 021791          200 FMALNRMDMVREIWNHVKGSELGLDL---DSYTMLIHGLCEKQKWKEACQYFVEMIE  253 (307)
Q Consensus       200 ~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~li~~~~~~g~~~~a~~~~~~~~~  253 (307)
                      +...++.+.|+.+|++.... +.++.   ..|...++.=.+.|+.+.+.++.+++.+
T Consensus        80 l~~~~d~~~aR~lfer~i~~-l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~  135 (280)
T PF05843_consen   80 LIKLNDINNARALFERAISS-LPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEE  135 (280)
T ss_dssp             HHHTT-HHHHHHHHHHHCCT-SSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHH
T ss_pred             HHHhCcHHHHHHHHHHHHHh-cCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            55555555555555554443 11111   2445555444455555555555555444

The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.

>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]

Probab=98.14  E-value=0.00058  Score=59.49  Aligned_cols=237  Identities=15%  Similarity=0.116  Sum_probs=156.3

Q ss_pred             HHhcCchhhHHHHHHHHHhcCCCCcHHHHHHHHHHHHhhCCCCcchhhHHHHHHHH--HHHHHHHhcCCCCCHHHHHHHH
Q 021791           14 WCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPNERFEKTIRNAE--KVFDEMRVRGIEPDVTSFSIVL   91 (307)
Q Consensus        14 ~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~a~--~~~~~~~~~~~~~~~~~~~~ll   91 (307)
                      |..-|+.+.|.+-++.++      +...|..+.+.|.+...++-+....|..+.|.  +.+++..+.|-    .+=.-..
T Consensus       738 yvtiG~MD~AfksI~~Ik------S~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~~~----e~eakvA  807 (1416)
T KOG3617|consen  738 YVTIGSMDAAFKSIQFIK------SDSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQNGE----EDEAKVA  807 (1416)
T ss_pred             EEEeccHHHHHHHHHHHh------hhHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhCCc----chhhHHH
Confidence            556788888888777665      44689999999999766666555555555544  33455555432    1111222


Q ss_pred             HHHHhcCCchhHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHhcCCChh
Q 021791           92 HVYSRAHKPQLSLDKLNFMKEKGICPTVATYTSVVKCLCSCGRIEDAEELLGEMVRNGVSPSAETYNCFFKEYRGRKDAN  171 (307)
Q Consensus        92 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~  171 (307)
                      -.....|..++|+.+|.+.++.         ..|=..|-..|.+++|.++-+.=-+..+   ..||......+...++.+
T Consensus       808 vLAieLgMlEeA~~lYr~ckR~---------DLlNKlyQs~g~w~eA~eiAE~~DRiHL---r~Tyy~yA~~Lear~Di~  875 (1416)
T KOG3617|consen  808 VLAIELGMLEEALILYRQCKRY---------DLLNKLYQSQGMWSEAFEIAETKDRIHL---RNTYYNYAKYLEARRDIE  875 (1416)
T ss_pred             HHHHHHhhHHHHHHHHHHHHHH---------HHHHHHHHhcccHHHHHHHHhhccceeh---hhhHHHHHHHHHhhccHH
Confidence            2345788999999999998764         3455677889999999988765433222   245656666666777788


Q ss_pred             HHHHHHHHHh----------hcCC--------CCccHHHHHHHHHHHHhcCcHHHHHHHHHHHhhCCCCCCHHhHHHHHH
Q 021791          172 GAMKLYRQMK----------EDDL--------CVPNIHTYNILIGMFMALNRMDMVREIWNHVKGSELGLDLDSYTMLIH  233 (307)
Q Consensus       172 ~a~~~~~~~~----------~~~~--------~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~  233 (307)
                      .|++.|++..          ....        -..|...|..-.+.+-..|+.+.|+.++...+.         |-.+++
T Consensus       876 ~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D---------~fs~Vr  946 (1416)
T KOG3617|consen  876 AALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAKD---------YFSMVR  946 (1416)
T ss_pred             HHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhhh---------hhhhee
Confidence            8777776532          1110        022444555555666677888888888776553         456677


Q ss_pred             HHHccCcHHHHHHHHHHHHHcCCCCcHhhHHHHHHHHhhchhHHHHHHHHHHhh
Q 021791          234 GLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLD  287 (307)
Q Consensus       234 ~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~  287 (307)
                      ..|-.|+.++|-.+-++-      -|......+.+.|...|++.+|..+|-+.+
T Consensus       947 I~C~qGk~~kAa~iA~es------gd~AAcYhlaR~YEn~g~v~~Av~FfTrAq  994 (1416)
T KOG3617|consen  947 IKCIQGKTDKAARIAEES------GDKAACYHLARMYENDGDVVKAVKFFTRAQ  994 (1416)
T ss_pred             eEeeccCchHHHHHHHhc------ccHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence            777888888888776653      244555667888888888888888876654

>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.14  E-value=0.00091  Score=59.60  Aligned_cols=190  Identities=15%  Similarity=0.145  Sum_probs=119.9

Q ss_pred             HHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCchhHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCChHHHHHH
Q 021791           62 EKTIRNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHKPQLSLDKLNFMKEKGICPTVATYTSVVKCLCSCGRIEDAEEL  141 (307)
Q Consensus        62 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~  141 (307)
                      .+.+.+|++-|-+.      -|+..|..+++...+.|.+++..+++....+..-.|..  =+.|+-+|++.++..+.++.
T Consensus      1117 ~~~v~dAieSyika------dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~i--d~eLi~AyAkt~rl~elE~f 1188 (1666)
T KOG0985|consen 1117 GGLVKDAIESYIKA------DDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREPYI--DSELIFAYAKTNRLTELEEF 1188 (1666)
T ss_pred             cCchHHHHHHHHhc------CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCccc--hHHHHHHHHHhchHHHHHHH
Confidence            44455555544221      27788999999999999999999999888887665554  45688899999988877655


Q ss_pred             HHHHHhCCCCCCHhhHHHHHHHHhcCCChhHHHHHHHHHhhcC-------------------CCCccHHHHHHHHHHHHh
Q 021791          142 LGEMVRNGVSPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDD-------------------LCVPNIHTYNILIGMFMA  202 (307)
Q Consensus       142 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-------------------~~~~~~~~~~~l~~~~~~  202 (307)
                      ..       -|+......+.+-|...+.++.|.-++.....-.                   .-..+..||..+-.+|..
T Consensus      1189 i~-------gpN~A~i~~vGdrcf~~~~y~aAkl~y~~vSN~a~La~TLV~LgeyQ~AVD~aRKAns~ktWK~VcfaCvd 1261 (1666)
T KOG0985|consen 1189 IA-------GPNVANIQQVGDRCFEEKMYEAAKLLYSNVSNFAKLASTLVYLGEYQGAVDAARKANSTKTWKEVCFACVD 1261 (1666)
T ss_pred             hc-------CCCchhHHHHhHHHhhhhhhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHhc
Confidence            31       2344444444444444444444444443321110                   002355677777777766


Q ss_pred             cCcHHHHHHHHHHHhhCCCCCCHHhHHHHHHHHHccCcHHHHHHHHHHHHHcCCC-CcHhhHHHHHHHHhhc
Q 021791          203 LNRMDMVREIWNHVKGSELGLDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLL-PQKVTFETLYRGLIQS  273 (307)
Q Consensus       203 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~-p~~~~~~~l~~~~~~~  273 (307)
                      .+.+..|     +|...++.....-...++..|-..|-+++.+.+++..+  |+. ..-..|+-|.-.|++-
T Consensus      1262 ~~EFrlA-----QiCGL~iivhadeLeeli~~Yq~rGyFeElIsl~Ea~L--GLERAHMgmfTELaiLYsky 1326 (1666)
T KOG0985|consen 1262 KEEFRLA-----QICGLNIIVHADELEELIEYYQDRGYFEELISLLEAGL--GLERAHMGMFTELAILYSKY 1326 (1666)
T ss_pred             hhhhhHH-----HhcCceEEEehHhHHHHHHHHHhcCcHHHHHHHHHhhh--chhHHHHHHHHHHHHHHHhc
Confidence            6555433     33344444455667889999999999999999998765  332 2223466665555543

>KOG3616 consensus Selective LIM binding factor [Transcription]

Probab=98.13  E-value=0.00075  Score=58.17  Aligned_cols=109  Identities=15%  Similarity=0.184  Sum_probs=59.8

Q ss_pred             HHHHHhcCCchhHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHhcCCCh
Q 021791           91 LHVYSRAHKPQLSLDKLNFMKEKGICPTVATYTSVVKCLCSCGRIEDAEELLGEMVRNGVSPSAETYNCFFKEYRGRKDA  170 (307)
Q Consensus        91 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~  170 (307)
                      +.+......|.+|+.+++.+.....  -..-|..+...|+..|+++.|+++|-+.         ..++-.|..|.+.|++
T Consensus       739 ieaai~akew~kai~ildniqdqk~--~s~yy~~iadhyan~~dfe~ae~lf~e~---------~~~~dai~my~k~~kw  807 (1636)
T KOG3616|consen  739 IEAAIGAKEWKKAISILDNIQDQKT--ASGYYGEIADHYANKGDFEIAEELFTEA---------DLFKDAIDMYGKAGKW  807 (1636)
T ss_pred             HHHHhhhhhhhhhHhHHHHhhhhcc--ccccchHHHHHhccchhHHHHHHHHHhc---------chhHHHHHHHhccccH
Confidence            3344555666666666666655432  2334556666667777777776666442         2334456666677777


Q ss_pred             hHHHHHHHHHhhcCCCCccHHHHHHHHHHHHhcCcHHHHHHHH
Q 021791          171 NGAMKLYRQMKEDDLCVPNIHTYNILIGMFMALNRMDMVREIW  213 (307)
Q Consensus       171 ~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~  213 (307)
                      +.|.++-.+....   ......|-+-..-.-.+|++.+|++++
T Consensus       808 ~da~kla~e~~~~---e~t~~~yiakaedldehgkf~eaeqly  847 (1636)
T KOG3616|consen  808 EDAFKLAEECHGP---EATISLYIAKAEDLDEHGKFAEAEQLY  847 (1636)
T ss_pred             HHHHHHHHHhcCc---hhHHHHHHHhHHhHHhhcchhhhhhee
Confidence            7666666555432   233344444444444555555555443

>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins

Probab=98.13  E-value=7.2e-05  Score=58.80  Aligned_cols=131  Identities=16%  Similarity=0.193  Sum_probs=101.5

Q ss_pred             hhHHHHHHHHhcCCChhHHHHHHHHHhhcCCCCccHHHHHHHHHH-HHhcCcHHHHHHHHHHHhhCCCCCCHHhHHHHHH
Q 021791          155 ETYNCFFKEYRGRKDANGAMKLYRQMKEDDLCVPNIHTYNILIGM-FMALNRMDMVREIWNHVKGSELGLDLDSYTMLIH  233 (307)
Q Consensus       155 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~  233 (307)
                      .+|..+++...+.+..+.|..+|.+..+.+.  .+..+|...... +...++.+.|.++|+...+. +..+...|...+.
T Consensus         2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~~~--~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~-f~~~~~~~~~Y~~   78 (280)
T PF05843_consen    2 LVWIQYMRFMRRTEGIEAARKVFKRARKDKR--CTYHVYVAYALMEYYCNKDPKRARKIFERGLKK-FPSDPDFWLEYLD   78 (280)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC--S-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHH-HTT-HHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCChHHHHHHHHHHHcCCC--CCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCCHHHHHHHHH
Confidence            4688889999999999999999999987653  345555555554 33356777799999998876 4558888999999


Q ss_pred             HHHccCcHHHHHHHHHHHHHcCCCCcH---hhHHHHHHHHhhchhHHHHHHHHHHhhhc
Q 021791          234 GLCEKQKWKEACQYFVEMIEKGLLPQK---VTFETLYRGLIQSDMLRTWRRLKKKLDEE  289 (307)
Q Consensus       234 ~~~~~g~~~~a~~~~~~~~~~~~~p~~---~~~~~l~~~~~~~g~~~~a~~~~~~~~~~  289 (307)
                      .+...|+.+.|..+|++.+.. +.++.   ..|...++-=.+.|+.+.+..+.+++.+.
T Consensus        79 ~l~~~~d~~~aR~lfer~i~~-l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~  136 (280)
T PF05843_consen   79 FLIKLNDINNARALFERAISS-LPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEEL  136 (280)
T ss_dssp             HHHHTT-HHHHHHHHHHHCCT-SSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHH
T ss_pred             HHHHhCcHHHHHHHHHHHHHh-cCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence            999999999999999999876 43333   47899998889999999999999888654

The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.

>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses

Probab=98.12  E-value=0.00013  Score=53.22  Aligned_cols=93  Identities=15%  Similarity=0.262  Sum_probs=63.6

Q ss_pred             CCcHHHHHHHHHHHHhhCCCCcchhhHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhc----------------CC
Q 021791           36 EPNVVTYNVLLNGVCRRASLHPNERFEKTIRNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRA----------------HK   99 (307)
Q Consensus        36 ~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~----------------~~   99 (307)
                      ..+..+|..++..+.+.....     .|.++-....+..|.+-|+.-|..+|+.|++.+=+.                .+
T Consensus        44 ~k~K~~F~~~V~~f~~~~~~R-----RGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPKg~fvp~n~fQ~~F~hyp~Q  118 (228)
T PF06239_consen   44 AKDKATFLEAVDIFKQRDVRR-----RGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPKGKFVPRNFFQAEFMHYPRQ  118 (228)
T ss_pred             cccHHHHHHHHHHHHhcCCCC-----cChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCCCCcccccHHHHHhccCcHH
Confidence            458888888888888753111     677777788888888889999999999999876541                12


Q ss_pred             chhHHHHHHHHHHcCCCCchhhHHHHHHHHHhcC
Q 021791          100 PQLSLDKLNFMKEKGICPTVATYTSVVKCLCSCG  133 (307)
Q Consensus       100 ~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~  133 (307)
                      .+-+++++++|...|+.||..++..+++.+++.+
T Consensus       119 q~c~i~lL~qME~~gV~Pd~Et~~~ll~iFG~~s  152 (228)
T PF06239_consen  119 QECAIDLLEQMENNGVMPDKETEQMLLNIFGRKS  152 (228)
T ss_pred             HHHHHHHHHHHHHcCCCCcHHHHHHHHHHhcccc
Confidence            2345566666666666666666666666655544

ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].

>KOG3616 consensus Selective LIM binding factor [Transcription]

Probab=98.11  E-value=0.00049  Score=59.21  Aligned_cols=138  Identities=16%  Similarity=0.191  Sum_probs=87.3

Q ss_pred             HHHHhcCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHhcCCChhHHHHHHHHHhhcCCCCccHHHHHHHHHHHHhcCcH
Q 021791          127 KCLCSCGRIEDAEELLGEMVRNGVSPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDDLCVPNIHTYNILIGMFMALNRM  206 (307)
Q Consensus       127 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~  206 (307)
                      .+......+.+|+.+++.+++...  ...-|..+.+.|...|+++.|.++|-+.-          .++-.|.+|.+.|+|
T Consensus       740 eaai~akew~kai~ildniqdqk~--~s~yy~~iadhyan~~dfe~ae~lf~e~~----------~~~dai~my~k~~kw  807 (1636)
T KOG3616|consen  740 EAAIGAKEWKKAISILDNIQDQKT--ASGYYGEIADHYANKGDFEIAEELFTEAD----------LFKDAIDMYGKAGKW  807 (1636)
T ss_pred             HHHhhhhhhhhhHhHHHHhhhhcc--ccccchHHHHHhccchhHHHHHHHHHhcc----------hhHHHHHHHhccccH
Confidence            334455677777777777766532  33456667777788888887777775532          234556777788888


Q ss_pred             HHHHHHHHHHhhCCCCCCHHhHHHHHHHHHccCcHHHHHHHHHHHHHcCCCCcHhhHHHHHHHHhhchhHHHHHHHHHHh
Q 021791          207 DMVREIWNHVKGSELGLDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKL  286 (307)
Q Consensus       207 ~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~  286 (307)
                      +.|.++-.+...  .......|-.-.+-+-.+|++.+|.+++-...    .|+.     .|+.|-+.|..+...++..+-
T Consensus       808 ~da~kla~e~~~--~e~t~~~yiakaedldehgkf~eaeqlyiti~----~p~~-----aiqmydk~~~~ddmirlv~k~  876 (1636)
T KOG3616|consen  808 EDAFKLAEECHG--PEATISLYIAKAEDLDEHGKFAEAEQLYITIG----EPDK-----AIQMYDKHGLDDDMIRLVEKH  876 (1636)
T ss_pred             HHHHHHHHHhcC--chhHHHHHHHhHHhHHhhcchhhhhheeEEcc----CchH-----HHHHHHhhCcchHHHHHHHHh
Confidence            888777665543  23344555555566667777777777765432    2332     356677777777777776654


Q ss_pred             h
Q 021791          287 D  287 (307)
Q Consensus       287 ~  287 (307)
                      .
T Consensus       877 h  877 (1636)
T KOG3616|consen  877 H  877 (1636)
T ss_pred             C
Confidence            3

>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]

Probab=98.11  E-value=0.0026  Score=49.94  Aligned_cols=235  Identities=9%  Similarity=0.074  Sum_probs=157.9

Q ss_pred             HHHHhcCchhhHHHHHHHHHhcCCCCcHH----HHHH--HHHHHHhhCCCCcchhhHHHHHHHHHHHHHHHhcCCCCCHH
Q 021791           12 YGWCKINRIDMAERFLGEMIERGVEPNVV----TYNV--LLNGVCRRASLHPNERFEKTIRNAEKVFDEMRVRGIEPDVT   85 (307)
Q Consensus        12 ~~~~~~g~~~~a~~~~~~~~~~~~~p~~~----~~~~--ll~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~   85 (307)
                      ..+.+.|.+++|..=|+..++..  |+..    .+..  ++.-.....+.-....-.|+...|+.....+.+.. +-|..
T Consensus       114 ~vllK~Gele~A~~DF~~vl~~~--~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~-~Wda~  190 (504)
T KOG0624|consen  114 VVLLKQGELEQAEADFDQVLQHE--PSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEIQ-PWDAS  190 (504)
T ss_pred             hhhhhcccHHHHHHHHHHHHhcC--CCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhcC-cchhH
Confidence            34678899999999999998863  3211    1111  11111110000000000567778888888888763 44888


Q ss_pred             HHHHHHHHHHhcCCchhHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHhhH----HHH-
Q 021791           86 SFSIVLHVYSRAHKPQLSLDKLNFMKEKGICPTVATYTSVVKCLCSCGRIEDAEELLGEMVRNGVSPSAETY----NCF-  160 (307)
Q Consensus        86 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~----~~l-  160 (307)
                      .+..-..+|...|++..|+.=++...+.... +..++--+-..+...|+.+.++....+..+.  .||....    -.+ 
T Consensus       191 l~~~Rakc~i~~~e~k~AI~Dlk~askLs~D-nTe~~ykis~L~Y~vgd~~~sL~~iRECLKl--dpdHK~Cf~~YKklk  267 (504)
T KOG0624|consen  191 LRQARAKCYIAEGEPKKAIHDLKQASKLSQD-NTEGHYKISQLLYTVGDAENSLKEIRECLKL--DPDHKLCFPFYKKLK  267 (504)
T ss_pred             HHHHHHHHHHhcCcHHHHHHHHHHHHhcccc-chHHHHHHHHHHHhhhhHHHHHHHHHHHHcc--CcchhhHHHHHHHHH
Confidence            8888899999999999998888777666443 6666777778888999999999988888875  3443321    111 


Q ss_pred             --------HHHHhcCCChhHHHHHHHHHhhcCCCCcc---HHHHHHHHHHHHhcCcHHHHHHHHHHHhhCCCCCCHHhHH
Q 021791          161 --------FKEYRGRKDANGAMKLYRQMKEDDLCVPN---IHTYNILIGMFMALNRMDMVREIWNHVKGSELGLDLDSYT  229 (307)
Q Consensus       161 --------~~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~  229 (307)
                              +......+++-++..-.+...+... ...   ...+..+-.++...+++.+|++...++..... -|..++.
T Consensus       268 Kv~K~les~e~~ie~~~~t~cle~ge~vlk~ep-~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~~d~-~dv~~l~  345 (504)
T KOG0624|consen  268 KVVKSLESAEQAIEEKHWTECLEAGEKVLKNEP-EETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLDIDP-DDVQVLC  345 (504)
T ss_pred             HHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCC-cccceeeeeeheeeecccccCCHHHHHHHHHHHHhcCc-hHHHHHH
Confidence                    2223556777778777777776642 112   23344566667778899999999988887532 2477888


Q ss_pred             HHHHHHHccCcHHHHHHHHHHHHHc
Q 021791          230 MLIHGLCEKQKWKEACQYFVEMIEK  254 (307)
Q Consensus       230 ~li~~~~~~g~~~~a~~~~~~~~~~  254 (307)
                      --..+|.-...++.|+.-|+...+.
T Consensus       346 dRAeA~l~dE~YD~AI~dye~A~e~  370 (504)
T KOG0624|consen  346 DRAEAYLGDEMYDDAIHDYEKALEL  370 (504)
T ss_pred             HHHHHHhhhHHHHHHHHHHHHHHhc
Confidence            8888888888899999988888764

>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF

Probab=98.09  E-value=0.00027  Score=47.61  Aligned_cols=98  Identities=10%  Similarity=0.031  Sum_probs=43.1

Q ss_pred             HHHHHHHHHhcCChHHHHHHHHHHHhCCCC--CCHhhHHHHHHHHhcCCChhHHHHHHHHHhhcCCC-CccHHHHHHHHH
Q 021791          122 YTSVVKCLCSCGRIEDAEELLGEMVRNGVS--PSAETYNCFFKEYRGRKDANGAMKLYRQMKEDDLC-VPNIHTYNILIG  198 (307)
Q Consensus       122 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~l~~  198 (307)
                      +..+...+.+.|++++|...|+.+......  .....+..+..++.+.|+++.|...++.+...... +....++..+..
T Consensus         5 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~   84 (119)
T TIGR02795         5 YYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLGM   84 (119)
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHHH
Confidence            334444455555555555555555443211  01223334444555555555555555554443210 011233444444


Q ss_pred             HHHhcCcHHHHHHHHHHHhhC
Q 021791          199 MFMALNRMDMVREIWNHVKGS  219 (307)
Q Consensus       199 ~~~~~~~~~~a~~~~~~~~~~  219 (307)
                      ++...|+.++|.+.++.+...
T Consensus        85 ~~~~~~~~~~A~~~~~~~~~~  105 (119)
T TIGR02795        85 SLQELGDKEKAKATLQQVIKR  105 (119)
T ss_pred             HHHHhCChHHHHHHHHHHHHH
Confidence            444455555555555544443

Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.

>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A

Probab=98.07  E-value=1.3e-05  Score=50.51  Aligned_cols=20  Identities=10%  Similarity=0.243  Sum_probs=9.1

Q ss_pred             HHHHHHhcCcHHHHHHHHHH
Q 021791          196 LIGMFMALNRMDMVREIWNH  215 (307)
Q Consensus       196 l~~~~~~~~~~~~a~~~~~~  215 (307)
                      +..++.+.|++++|..+++.
T Consensus        31 la~~~~~~~~y~~A~~~~~~   50 (84)
T PF12895_consen   31 LAQCYFQQGKYEEAIELLQK   50 (84)
T ss_dssp             HHHHHHHTTHHHHHHHHHHC
T ss_pred             HHHHHHHCCCHHHHHHHHHH
Confidence            44444444444444444444

>PRK02603 photosystem I assembly protein Ycf3; Provisional

Probab=98.03  E-value=0.00065  Score=49.32  Aligned_cols=62  Identities=10%  Similarity=-0.059  Sum_probs=28.7

Q ss_pred             HHHHHHHHHHhcCCchhHHHHHHHHHHcCCCCc--hhhHHHHHHHHHhcCChHHHHHHHHHHHh
Q 021791           86 SFSIVLHVYSRAHKPQLSLDKLNFMKEKGICPT--VATYTSVVKCLCSCGRIEDAEELLGEMVR  147 (307)
Q Consensus        86 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~ll~~~~~~~~~~~a~~~~~~~~~  147 (307)
                      .+..+...+...|++++|...|++..+....+.  ...+..+...+.+.|++++|...+++...
T Consensus        37 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~  100 (172)
T PRK02603         37 VYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALE  100 (172)
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            344444445555555555555555544322111  23444444444455555555555444444

>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]

Probab=98.02  E-value=0.0027  Score=52.79  Aligned_cols=187  Identities=9%  Similarity=0.057  Sum_probs=133.8

Q ss_pred             HHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcC---CchhHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCChHHHHHH
Q 021791           65 IRNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAH---KPQLSLDKLNFMKEKGICPTVATYTSVVKCLCSCGRIEDAEEL  141 (307)
Q Consensus        65 ~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~---~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~  141 (307)
                      -+++..++++....-..-+..+|..+...--..-   ..+.....++++...-..--..+|..+++.-.+..-++.|..+
T Consensus       309 t~e~~~~yEr~I~~l~~~~~~Ly~~~a~~eE~~~~~n~~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~i  388 (656)
T KOG1914|consen  309 TDEAASIYERAIEGLLKENKLLYFALADYEESRYDDNKEKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAARKI  388 (656)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhcccchhhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHHHHH
Confidence            3556666666554433334444444333221122   2556667777776553222345788889988899999999999


Q ss_pred             HHHHHhCCCCC-CHhhHHHHHHHHhcCCChhHHHHHHHHHhhcCCCCccHHHHHHHHHHHHhcCcHHHHHHHHHHHhhCC
Q 021791          142 LGEMVRNGVSP-SAETYNCFFKEYRGRKDANGAMKLYRQMKEDDLCVPNIHTYNILIGMFMALNRMDMVREIWNHVKGSE  220 (307)
Q Consensus       142 ~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~  220 (307)
                      |.+..+.+..+ ++...+++|..|| .++.+-|.++|+.-.+.-  ..+..--...+..+...++-..+..+|++....+
T Consensus       389 F~kaR~~~r~~hhVfVa~A~mEy~c-skD~~~AfrIFeLGLkkf--~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~  465 (656)
T KOG1914|consen  389 FKKAREDKRTRHHVFVAAALMEYYC-SKDKETAFRIFELGLKKF--GDSPEYVLKYLDFLSHLNDDNNARALFERVLTSV  465 (656)
T ss_pred             HHHHhhccCCcchhhHHHHHHHHHh-cCChhHHHHHHHHHHHhc--CCChHHHHHHHHHHHHhCcchhHHHHHHHHHhcc
Confidence            99999887776 6667777887665 578899999999887773  3344444677888889999999999999999886


Q ss_pred             CCCC--HHhHHHHHHHHHccCcHHHHHHHHHHHHHc
Q 021791          221 LGLD--LDSYTMLIHGLCEKQKWKEACQYFVEMIEK  254 (307)
Q Consensus       221 ~~~~--~~~~~~li~~~~~~g~~~~a~~~~~~~~~~  254 (307)
                      ..|+  ...|..+|+-=..-|+...+.++-+++...
T Consensus       466 l~~~ks~~Iw~r~l~yES~vGdL~si~~lekR~~~a  501 (656)
T KOG1914|consen  466 LSADKSKEIWDRMLEYESNVGDLNSILKLEKRRFTA  501 (656)
T ss_pred             CChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHHHh
Confidence            5554  468999999889999999999998877553

>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional

Probab=98.01  E-value=0.00032  Score=57.20  Aligned_cols=86  Identities=14%  Similarity=-0.016  Sum_probs=40.5

Q ss_pred             hcCCChhHHHHHHHHHhhcCCCCccHHHHHHHHHHHHhcCcHHHHHHHHHHHhhCCCCCCHHhHHHHHHHHHccCcHHHH
Q 021791          165 RGRKDANGAMKLYRQMKEDDLCVPNIHTYNILIGMFMALNRMDMVREIWNHVKGSELGLDLDSYTMLIHGLCEKQKWKEA  244 (307)
Q Consensus       165 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a  244 (307)
                      ...|++++|+..|++.....  +.+...|..+..+|...|++++|+..++.+..... .+...|..+..+|...|++++|
T Consensus        13 ~~~~~~~~Ai~~~~~Al~~~--P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P-~~~~a~~~lg~~~~~lg~~~eA   89 (356)
T PLN03088         13 FVDDDFALAVDLYTQAIDLD--PNNAELYADRAQANIKLGNFTEAVADANKAIELDP-SLAKAYLRKGTACMKLEEYQTA   89 (356)
T ss_pred             HHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc-CCHHHHHHHHHHHHHhCCHHHH
Confidence            34444555555555444443  33444444444455555555555555555444321 1334444444445555555555


Q ss_pred             HHHHHHHHH
Q 021791          245 CQYFVEMIE  253 (307)
Q Consensus       245 ~~~~~~~~~  253 (307)
                      ...|++.++
T Consensus        90 ~~~~~~al~   98 (356)
T PLN03088         90 KAALEKGAS   98 (356)
T ss_pred             HHHHHHHHH
Confidence            555555443

>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional

Probab=98.01  E-value=0.00035  Score=57.03  Aligned_cols=88  Identities=10%  Similarity=-0.048  Sum_probs=40.9

Q ss_pred             HHhcCCchhHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHhcCCChhHH
Q 021791           94 YSRAHKPQLSLDKLNFMKEKGICPTVATYTSVVKCLCSCGRIEDAEELLGEMVRNGVSPSAETYNCFFKEYRGRKDANGA  173 (307)
Q Consensus        94 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a  173 (307)
                      +...|+++.|++.|.+..+.... +...|..+..+|.+.|++++|+..++++...... +...|..+..+|...|++++|
T Consensus        12 a~~~~~~~~Ai~~~~~Al~~~P~-~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~-~~~a~~~lg~~~~~lg~~~eA   89 (356)
T PLN03088         12 AFVDDDFALAVDLYTQAIDLDPN-NAELYADRAQANIKLGNFTEAVADANKAIELDPS-LAKAYLRKGTACMKLEEYQTA   89 (356)
T ss_pred             HHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC-CHHHHHHHHHHHHHhCCHHHH
Confidence            33444555555555555444322 3444444444455555555555555554443221 333444444444455555555


Q ss_pred             HHHHHHHhhc
Q 021791          174 MKLYRQMKED  183 (307)
Q Consensus       174 ~~~~~~~~~~  183 (307)
                      ...|++....
T Consensus        90 ~~~~~~al~l   99 (356)
T PLN03088         90 KAALEKGASL   99 (356)
T ss_pred             HHHHHHHHHh
Confidence            5555444443

>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional

Probab=98.00  E-value=0.00076  Score=47.04  Aligned_cols=90  Identities=9%  Similarity=-0.025  Sum_probs=49.2

Q ss_pred             HHHHhcCCChhHHHHHHHHHhhcCCCCccHHHHHHHHHHHHhcCcHHHHHHHHHHHhhCCCCCCHHhHHHHHHHHHccCc
Q 021791          161 FKEYRGRKDANGAMKLYRQMKEDDLCVPNIHTYNILIGMFMALNRMDMVREIWNHVKGSELGLDLDSYTMLIHGLCEKQK  240 (307)
Q Consensus       161 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~  240 (307)
                      ...+...|++++|..+|+.+...+  +.+..-|..|.-++-..|++++|+..+......++. ++..+-.+..++...|+
T Consensus        42 A~~ly~~G~l~~A~~~f~~L~~~D--p~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~d-dp~~~~~ag~c~L~lG~  118 (157)
T PRK15363         42 AMQLMEVKEFAGAARLFQLLTIYD--AWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKID-APQAPWAAAECYLACDN  118 (157)
T ss_pred             HHHHHHCCCHHHHHHHHHHHHHhC--cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC-CchHHHHHHHHHHHcCC
Confidence            333445555555555555555554  344455555555555555666666655555554432 45555555555555566


Q ss_pred             HHHHHHHHHHHHH
Q 021791          241 WKEACQYFVEMIE  253 (307)
Q Consensus       241 ~~~a~~~~~~~~~  253 (307)
                      .+.|.+.|+..+.
T Consensus       119 ~~~A~~aF~~Ai~  131 (157)
T PRK15363        119 VCYAIKALKAVVR  131 (157)
T ss_pred             HHHHHHHHHHHHH
Confidence            6666555555544

>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A

Probab=97.99  E-value=2.6e-05  Score=49.10  Aligned_cols=81  Identities=10%  Similarity=0.050  Sum_probs=40.5

Q ss_pred             cCcHHHHHHHHHHHhhCCCC-CCHHhHHHHHHHHHccCcHHHHHHHHHHHHHcCCCCcHhhHHHHHHHHhhchhHHHHHH
Q 021791          203 LNRMDMVREIWNHVKGSELG-LDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRR  281 (307)
Q Consensus       203 ~~~~~~a~~~~~~~~~~~~~-~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~  281 (307)
                      .|+++.|+.+++.+.+.... ++...+..+..+|.+.|++++|..++++ .+.+. .+......+..+|.+.|++++|.+
T Consensus         2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~-~~~~~~~l~a~~~~~l~~y~eAi~   79 (84)
T PF12895_consen    2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDP-SNPDIHYLLARCLLKLGKYEEAIK   79 (84)
T ss_dssp             TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHH-CHHHHHHHHHHHHHHTT-HHHHHH
T ss_pred             CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCC-CCHHHHHHHHHHHHHhCCHHHHHH
Confidence            35566666666666554321 1233344456666666666666666655 21111 122333344556666666666666


Q ss_pred             HHHH
Q 021791          282 LKKK  285 (307)
Q Consensus       282 ~~~~  285 (307)
                      ++++
T Consensus        80 ~l~~   83 (84)
T PF12895_consen   80 ALEK   83 (84)
T ss_dssp             HHHH
T ss_pred             HHhc
Confidence            6554

>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]

Probab=97.99  E-value=0.0033  Score=52.13  Aligned_cols=200  Identities=13%  Similarity=0.094  Sum_probs=134.6

Q ss_pred             HHHHHHHHHHHHhcCchhhHHHHHHHHHhcCCCCcHHHHHHHHHHHHhhCCCCcchhhHHHHHHHHHHHHHHHhcCCCCC
Q 021791            4 VKMYTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPNERFEKTIRNAEKVFDEMRVRGIEPD   83 (307)
Q Consensus         4 ~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~   83 (307)
                      +.-++....+|...|.+.++...-+...+.|.. ...-|+.+-.++.+.|.....   .++++.+...|.+.....-.|+
T Consensus       257 it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre-~rad~klIak~~~r~g~a~~k---~~~~~~ai~~~~kaLte~Rt~~  332 (539)
T KOG0548|consen  257 ITYLNNIAAVYLERGKYAECIELCEKAVEVGRE-LRADYKLIAKALARLGNAYTK---REDYEGAIKYYQKALTEHRTPD  332 (539)
T ss_pred             hHHHHHHHHHHHhccHHHHhhcchHHHHHHhHH-HHHHHHHHHHHHHHhhhhhhh---HHhHHHHHHHHHHHhhhhcCHH
Confidence            344566667778888877777777766665533 334555555555554332222   6888899999988766544433


Q ss_pred             HHHHHHHHHHHHhcCCchhHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHhhHHHHHHH
Q 021791           84 VTSFSIVLHVYSRAHKPQLSLDKLNFMKEKGICPTVATYTSVVKCLCSCGRIEDAEELLGEMVRNGVSPSAETYNCFFKE  163 (307)
Q Consensus        84 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~  163 (307)
                      ..         .+....+++.+..+...-.+... ..-...-.+.+.+.|++..|+..|.+++...+. |...|..-.-+
T Consensus       333 ~l---------s~lk~~Ek~~k~~e~~a~~~pe~-A~e~r~kGne~Fk~gdy~~Av~~YteAIkr~P~-Da~lYsNRAac  401 (539)
T KOG0548|consen  333 LL---------SKLKEAEKALKEAERKAYINPEK-AEEEREKGNEAFKKGDYPEAVKHYTEAIKRDPE-DARLYSNRAAC  401 (539)
T ss_pred             HH---------HHHHHHHHHHHHHHHHHhhChhH-HHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCc-hhHHHHHHHHH
Confidence            32         22333444544444443333221 122223367788899999999999999888644 78889989999


Q ss_pred             HhcCCChhHHHHHHHHHhhcCCCCccHHHHHHHHHHHHhcCcHHHHHHHHHHHhhCC
Q 021791          164 YRGRKDANGAMKLYRQMKEDDLCVPNIHTYNILIGMFMALNRMDMVREIWNHVKGSE  220 (307)
Q Consensus       164 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~  220 (307)
                      |.+.+.+..|+.-.+...+.+  ++....|..=..++....+++.|.+.|.+..+.+
T Consensus       402 ~~kL~~~~~aL~Da~~~ieL~--p~~~kgy~RKg~al~~mk~ydkAleay~eale~d  456 (539)
T KOG0548|consen  402 YLKLGEYPEALKDAKKCIELD--PNFIKAYLRKGAALRAMKEYDKALEAYQEALELD  456 (539)
T ss_pred             HHHHhhHHHHHHHHHHHHhcC--chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence            999999999988888877775  5666677666677777788999999998888764

>PRK10153 DNA-binding transcriptional activator CadC; Provisional

Probab=97.98  E-value=0.0023  Score=54.83  Aligned_cols=142  Identities=14%  Similarity=0.079  Sum_probs=87.3

Q ss_pred             CCCCcHHHHHHHHHHHHhhCCCCcchhhHHHHHHHHHHHHHHHhcCCCCC-HHHHHHHHHHHHhcCC--------chhHH
Q 021791           34 GVEPNVVTYNVLLNGVCRRASLHPNERFEKTIRNAEKVFDEMRVRGIEPD-VTSFSIVLHVYSRAHK--------PQLSL  104 (307)
Q Consensus        34 ~~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~ll~~~~~~~~--------~~~a~  104 (307)
                      ..+.+...|...+++........     .+..+.|..+|++..+.  .|+ ...|..+..++.....        ...+.
T Consensus       332 ~~~~~~~Ay~~~lrg~~~~~~~~-----~~~~~~A~~lle~Ai~l--dP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~  404 (517)
T PRK10153        332 GLPHQGAALTLFYQAHHYLNSGD-----AKSLNKASDLLEEILKS--EPDFTYAQAEKALADIVRHSQQPLDEKQLAALS  404 (517)
T ss_pred             cCCCCHHHHHHHHHHHHHHhcCC-----HHHHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHH
Confidence            34567788888888866533322     56678899999999887  444 4445544443332211        11222


Q ss_pred             HHHHHHHHc-CCCCchhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHhcCCChhHHHHHHHHHhhc
Q 021791          105 DKLNFMKEK-GICPTVATYTSVVKCLCSCGRIEDAEELLGEMVRNGVSPSAETYNCFFKEYRGRKDANGAMKLYRQMKED  183 (307)
Q Consensus       105 ~~~~~~~~~-~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~  183 (307)
                      +........ ....+...|..+.-.....|++++|...+++....+  |+...|..+...+...|++++|.+.+++....
T Consensus       405 ~~~~~a~al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~--ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L  482 (517)
T PRK10153        405 TELDNIVALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLE--MSWLNYVLLGKVYELKGDNRLAADAYSTAFNL  482 (517)
T ss_pred             HHHHHhhhcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence            222222221 123344566666666666777888888887777754  46677777777777778888887777777666


Q ss_pred             C
Q 021791          184 D  184 (307)
Q Consensus       184 ~  184 (307)
                      +
T Consensus       483 ~  483 (517)
T PRK10153        483 R  483 (517)
T ss_pred             C
Confidence            4

>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional

Probab=97.97  E-value=0.0004  Score=48.42  Aligned_cols=93  Identities=10%  Similarity=0.002  Sum_probs=58.1

Q ss_pred             HHHHHHHhcCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHhcCCChhHHHHHHHHHhhcCCCCccHHHHHHHHHHHHhc
Q 021791          124 SVVKCLCSCGRIEDAEELLGEMVRNGVSPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDDLCVPNIHTYNILIGMFMAL  203 (307)
Q Consensus       124 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  203 (307)
                      .+...+...|++++|..+|+.+....+. +..-|..|..++-..|++++|+..|.......  +.|+..+-.+..++...
T Consensus        40 ~~A~~ly~~G~l~~A~~~f~~L~~~Dp~-~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~--~ddp~~~~~ag~c~L~l  116 (157)
T PRK15363         40 RYAMQLMEVKEFAGAARLFQLLTIYDAW-SFDYWFRLGECCQAQKHWGEAIYAYGRAAQIK--IDAPQAPWAAAECYLAC  116 (157)
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC--CCCchHHHHHHHHHHHc
Confidence            3444455666666666666666655443 55556666666666666777777666666655  45566666666666667


Q ss_pred             CcHHHHHHHHHHHhhC
Q 021791          204 NRMDMVREIWNHVKGS  219 (307)
Q Consensus       204 ~~~~~a~~~~~~~~~~  219 (307)
                      |+.+.|++.|+.....
T Consensus       117 G~~~~A~~aF~~Ai~~  132 (157)
T PRK15363        117 DNVCYAIKALKAVVRI  132 (157)
T ss_pred             CCHHHHHHHHHHHHHH
Confidence            7777776666655543

>CHL00033 ycf3 photosystem I assembly protein Ycf3

Probab=97.96  E-value=0.00029  Score=50.93  Aligned_cols=64  Identities=19%  Similarity=0.065  Sum_probs=32.5

Q ss_pred             hhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCC--CHhhHHHHHHHHhcCCChhHHHHHHHHHhhc
Q 021791          120 ATYTSVVKCLCSCGRIEDAEELLGEMVRNGVSP--SAETYNCFFKEYRGRKDANGAMKLYRQMKED  183 (307)
Q Consensus       120 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~  183 (307)
                      ..+..+...+...|++++|...|++.......+  ...++..+...+...|++++|...++.....
T Consensus        36 ~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~  101 (168)
T CHL00033         36 FTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALER  101 (168)
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence            344445555555556666666555554432111  1234555555555555555555555555544

>PRK02603 photosystem I assembly protein Ycf3; Provisional

Probab=97.93  E-value=0.00087  Score=48.65  Aligned_cols=117  Identities=15%  Similarity=0.126  Sum_probs=86.8

Q ss_pred             chhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCC--HhhHHHHHHHHhcCCChhHHHHHHHHHhhcCCCCccHHHHHH
Q 021791          118 TVATYTSVVKCLCSCGRIEDAEELLGEMVRNGVSPS--AETYNCFFKEYRGRKDANGAMKLYRQMKEDDLCVPNIHTYNI  195 (307)
Q Consensus       118 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~  195 (307)
                      ....+..+...+...|++++|...|++.......+.  ...+..+...+.+.|++++|...+.+.....  +.+...+..
T Consensus        34 ~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~  111 (172)
T PRK02603         34 EAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELN--PKQPSALNN  111 (172)
T ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--cccHHHHHH
Confidence            455677788888889999999999998886543332  3577888888999999999999999888764  456667777


Q ss_pred             HHHHHHhcCc--------------HHHHHHHHHHHhhCCCCCCHHhHHHHHHHHHccCc
Q 021791          196 LIGMFMALNR--------------MDMVREIWNHVKGSELGLDLDSYTMLIHGLCEKQK  240 (307)
Q Consensus       196 l~~~~~~~~~--------------~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~  240 (307)
                      +...+...|+              +++|.++++.....+    +..|..++..+...|+
T Consensus       112 lg~~~~~~g~~~~a~~~~~~A~~~~~~A~~~~~~a~~~~----p~~~~~~~~~~~~~~~  166 (172)
T PRK02603        112 IAVIYHKRGEKAEEAGDQDEAEALFDKAAEYWKQAIRLA----PNNYIEAQNWLKTTGR  166 (172)
T ss_pred             HHHHHHHcCChHhHhhCHHHHHHHHHHHHHHHHHHHhhC----chhHHHHHHHHHhcCc
Confidence            7778877776              578899998888753    3336666666555543

>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A

Probab=97.89  E-value=0.0017  Score=51.27  Aligned_cols=197  Identities=12%  Similarity=0.084  Sum_probs=111.3

Q ss_pred             HHHHHHHhcCCchhHHHHHHHHHHc----CCC-CchhhHHHHHHHHHhcCChHHHHHHHHHHHhC---CCCCC--HhhHH
Q 021791           89 IVLHVYSRAHKPQLSLDKLNFMKEK----GIC-PTVATYTSVVKCLCSCGRIEDAEELLGEMVRN---GVSPS--AETYN  158 (307)
Q Consensus        89 ~ll~~~~~~~~~~~a~~~~~~~~~~----~~~-~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~---~~~~~--~~~~~  158 (307)
                      .....|-..+++++|.+.|......    +-. .-...|.....+|.+. ++++|...+++....   .-.|+  ...+.
T Consensus        40 ~Aa~~fk~~~~~~~A~~ay~kAa~~~~~~~~~~~Aa~~~~~Aa~~~k~~-~~~~Ai~~~~~A~~~y~~~G~~~~aA~~~~  118 (282)
T PF14938_consen   40 KAANCFKLAKDWEKAAEAYEKAADCYEKLGDKFEAAKAYEEAANCYKKG-DPDEAIECYEKAIEIYREAGRFSQAAKCLK  118 (282)
T ss_dssp             HHHHHHHHTT-CHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHT-THHHHHHHHHHHHHHHHHCT-HHHHHHHHH
T ss_pred             HHHHHHHHHhccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhh-CHHHHHHHHHHHHHHHHhcCcHHHHHHHHH
Confidence            3444556666777666666555321    111 1122344444444443 777777777766542   11222  33566


Q ss_pred             HHHHHHhcC-CChhHHHHHHHHHhhc----CCCCccHHHHHHHHHHHHhcCcHHHHHHHHHHHhhCCCCC-----CHH-h
Q 021791          159 CFFKEYRGR-KDANGAMKLYRQMKED----DLCVPNIHTYNILIGMFMALNRMDMVREIWNHVKGSELGL-----DLD-S  227 (307)
Q Consensus       159 ~l~~~~~~~-~~~~~a~~~~~~~~~~----~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-----~~~-~  227 (307)
                      .+...|... |++++|.+.|.+..+.    +....-..++..+...+.+.|++++|.++|+++.......     +.. .
T Consensus       119 ~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~  198 (282)
T PF14938_consen  119 ELAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEY  198 (282)
T ss_dssp             HHHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHH
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHH
Confidence            677778888 8999999998877543    2101123456778888999999999999999887643221     121 2


Q ss_pred             HHHHHHHHHccCcHHHHHHHHHHHHHc--CCCCc--HhhHHHHHHHHhhc--hhHHHHHHHHHHh
Q 021791          228 YTMLIHGLCEKQKWKEACQYFVEMIEK--GLLPQ--KVTFETLYRGLIQS--DMLRTWRRLKKKL  286 (307)
Q Consensus       228 ~~~li~~~~~~g~~~~a~~~~~~~~~~--~~~p~--~~~~~~l~~~~~~~--g~~~~a~~~~~~~  286 (307)
                      |-..+-++...|+...|...+++..+.  ++..+  ......|+.+|-..  ..++.+..-|+.+
T Consensus       199 ~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s~E~~~~~~l~~A~~~~D~e~f~~av~~~d~~  263 (282)
T PF14938_consen  199 FLKAILCHLAMGDYVAARKALERYCSQDPSFASSREYKFLEDLLEAYEEGDVEAFTEAVAEYDSI  263 (282)
T ss_dssp             HHHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTTSHHHHHHHHHHHHHHTT-CCCHHHHCHHHTTS
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHhCCHHHHHHHHHHHccc
Confidence            333444666789999999999998754  23222  23456667766442  2345554444444

>PRK10153 DNA-binding transcriptional activator CadC; Provisional

Probab=97.89  E-value=0.0044  Score=53.07  Aligned_cols=146  Identities=14%  Similarity=0.025  Sum_probs=96.1

Q ss_pred             CCCCchhhHHHHHHHHHhcC-----ChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHhcCC--------ChhHHHHHHHHH
Q 021791          114 GICPTVATYTSVVKCLCSCG-----RIEDAEELLGEMVRNGVSPSAETYNCFFKEYRGRK--------DANGAMKLYRQM  180 (307)
Q Consensus       114 ~~~~~~~~~~~ll~~~~~~~-----~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--------~~~~a~~~~~~~  180 (307)
                      +.+.+...|...+.+.....     ....|..+|++..+..+. ....+..+..++....        +...+.+...+.
T Consensus       332 ~~~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~ldP~-~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a  410 (517)
T PRK10153        332 GLPHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKSEPD-FTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNI  410 (517)
T ss_pred             cCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHh
Confidence            34557778888887754332     366888888888886433 3444444433332211        123334444443


Q ss_pred             hhcCCCCccHHHHHHHHHHHHhcCcHHHHHHHHHHHhhCCCCCCHHhHHHHHHHHHccCcHHHHHHHHHHHHHcCCCCcH
Q 021791          181 KEDDLCVPNIHTYNILIGMFMALNRMDMVREIWNHVKGSELGLDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQK  260 (307)
Q Consensus       181 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~  260 (307)
                      ......+.+...+..+.-.....|++++|...+++....+  |+...|..+...+...|+.++|.+.+++....  .|..
T Consensus       411 ~al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~--ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L--~P~~  486 (517)
T PRK10153        411 VALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLE--MSWLNYVLLGKVYELKGDNRLAADAYSTAFNL--RPGE  486 (517)
T ss_pred             hhcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCCC
Confidence            3321114556777777777777899999999999988874  57888888899999999999999999988754  5665


Q ss_pred             hhHH
Q 021791          261 VTFE  264 (307)
Q Consensus       261 ~~~~  264 (307)
                      .||.
T Consensus       487 pt~~  490 (517)
T PRK10153        487 NTLY  490 (517)
T ss_pred             chHH
Confidence            5544

>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A

Probab=97.88  E-value=0.0024  Score=50.46  Aligned_cols=126  Identities=16%  Similarity=0.144  Sum_probs=60.7

Q ss_pred             HHHHHHhc-CChHHHHHHHHHHHhC----CCCCC--HhhHHHHHHHHhcCCChhHHHHHHHHHhhcCC----CCccHH-H
Q 021791          125 VVKCLCSC-GRIEDAEELLGEMVRN----GVSPS--AETYNCFFKEYRGRKDANGAMKLYRQMKEDDL----CVPNIH-T  192 (307)
Q Consensus       125 ll~~~~~~-~~~~~a~~~~~~~~~~----~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~----~~~~~~-~  192 (307)
                      +...|-.. |++++|.+.|++..+.    + .+.  ..++..+...+.+.|++++|..+|+++.....    ...+.. .
T Consensus       120 lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~-~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~  198 (282)
T PF14938_consen  120 LAEIYEEQLGDYEKAIEYYQKAAELYEQEG-SPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEY  198 (282)
T ss_dssp             HHHHHCCTT--HHHHHHHHHHHHHHHHHTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHH
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHHHHHCC-ChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHH
Confidence            33344444 6666666666655432    2 111  23455566667777777777777776654321    011221 2


Q ss_pred             HHHHHHHHHhcCcHHHHHHHHHHHhhCC--CCCC--HHhHHHHHHHHHc--cCcHHHHHHHHHHH
Q 021791          193 YNILIGMFMALNRMDMVREIWNHVKGSE--LGLD--LDSYTMLIHGLCE--KQKWKEACQYFVEM  251 (307)
Q Consensus       193 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~--~~~~--~~~~~~li~~~~~--~g~~~~a~~~~~~~  251 (307)
                      +...+-.+...|+...|.+.++......  +..+  ......|+.+|-.  ...+..++.-|+.+
T Consensus       199 ~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s~E~~~~~~l~~A~~~~D~e~f~~av~~~d~~  263 (282)
T PF14938_consen  199 FLKAILCHLAMGDYVAARKALERYCSQDPSFASSREYKFLEDLLEAYEEGDVEAFTEAVAEYDSI  263 (282)
T ss_dssp             HHHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTTSHHHHHHHHHHHHHHTT-CCCHHHHCHHHTTS
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHhCCHHHHHHHHHHHccc
Confidence            2223334455667777777777766442  2212  2334555665532  23455555555544

>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]

Probab=97.87  E-value=0.013  Score=52.56  Aligned_cols=180  Identities=8%  Similarity=0.042  Sum_probs=132.9

Q ss_pred             chhHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHhcCCChhHHHHHHHH
Q 021791          100 PQLSLDKLNFMKEKGICPTVATYTSVVKCLCSCGRIEDAEELLGEMVRNGVSPSAETYNCFFKEYRGRKDANGAMKLYRQ  179 (307)
Q Consensus       100 ~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~  179 (307)
                      ...++..|-+..+.... =...|..|...|...-+...|...|+...+.+.. +..........|....+++.|..+.-.
T Consensus       474 ~~~al~ali~alrld~~-~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLDat-daeaaaa~adtyae~~~we~a~~I~l~  551 (1238)
T KOG1127|consen  474 SALALHALIRALRLDVS-LAPAFAFLGQIYRDSDDMKRAKKCFDKAFELDAT-DAEAAAASADTYAEESTWEEAFEICLR  551 (1238)
T ss_pred             HHHHHHHHHHHHhcccc-hhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCch-hhhhHHHHHHHhhccccHHHHHHHHHH
Confidence            56666666665555332 3567889999999888999999999999876544 677888999999999999999999443


Q ss_pred             HhhcCCCCccHH--HHHHHHHHHHhcCcHHHHHHHHHHHhhCCCCCCHHhHHHHHHHHHccCcHHHHHHHHHHHHHcCCC
Q 021791          180 MKEDDLCVPNIH--TYNILIGMFMALNRMDMVREIWNHVKGSELGLDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLL  257 (307)
Q Consensus       180 ~~~~~~~~~~~~--~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~  257 (307)
                      ..+..  +.-..  -|....-.|...++...+..-|+......+. |...|..+.++|.+.|++..|+++|.+....  .
T Consensus       552 ~~qka--~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~dPk-D~n~W~gLGeAY~~sGry~~AlKvF~kAs~L--r  626 (1238)
T KOG1127|consen  552 AAQKA--PAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRTDPK-DYNLWLGLGEAYPESGRYSHALKVFTKASLL--R  626 (1238)
T ss_pred             Hhhhc--hHHHHHhhhhhccccccCccchhhHHHHHHHHhcCCch-hHHHHHHHHHHHHhcCceehHHHhhhhhHhc--C
Confidence            33332  22222  2333445567788999999999988877544 8889999999999999999999999998754  5


Q ss_pred             CcHhhHHHHHHH--HhhchhHHHHHHHHHHhh
Q 021791          258 PQKVTFETLYRG--LIQSDMLRTWRRLKKKLD  287 (307)
Q Consensus       258 p~~~~~~~l~~~--~~~~g~~~~a~~~~~~~~  287 (307)
                      |+. +|.....+  -+..|+++++...+..+.
T Consensus       627 P~s-~y~~fk~A~~ecd~GkYkeald~l~~ii  657 (1238)
T KOG1127|consen  627 PLS-KYGRFKEAVMECDNGKYKEALDALGLII  657 (1238)
T ss_pred             cHh-HHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence            554 33333332  355788888888887764

>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A

Probab=97.85  E-value=0.0025  Score=47.65  Aligned_cols=171  Identities=9%  Similarity=0.051  Sum_probs=100.8

Q ss_pred             HHHHHHHhcCCchhHHHHHHHHHHcCC--CCchhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHhc
Q 021791           89 IVLHVYSRAHKPQLSLDKLNFMKEKGI--CPTVATYTSVVKCLCSCGRIEDAEELLGEMVRNGVSPSAETYNCFFKEYRG  166 (307)
Q Consensus        89 ~ll~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~  166 (307)
                      .....+...|++++|.+.|+.+...-.  +--....-.++.++.+.|+++.|...++++.+.-+.-....+...+.+.+.
T Consensus        10 ~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~~A~Y~~g~~~   89 (203)
T PF13525_consen   10 QKALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKADYALYMLGLSY   89 (203)
T ss_dssp             HHHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHHHHHHHHHHHH
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHH
Confidence            344566778999999999999887622  223445567788888999999999999998875332122222222222211


Q ss_pred             C-------------CChhHHHHHHHHHhhcCCCCccHHHHHHHHHHHHhcCcHHHHHHHHHHHhhCCCCCCHHhHHHHHH
Q 021791          167 R-------------KDANGAMKLYRQMKEDDLCVPNIHTYNILIGMFMALNRMDMVREIWNHVKGSELGLDLDSYTMLIH  233 (307)
Q Consensus       167 ~-------------~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~  233 (307)
                      -             +...+|...                +..++.-|=......+|...+..+...    =...--.+..
T Consensus        90 ~~~~~~~~~~~~D~~~~~~A~~~----------------~~~li~~yP~S~y~~~A~~~l~~l~~~----la~~e~~ia~  149 (203)
T PF13525_consen   90 YKQIPGILRSDRDQTSTRKAIEE----------------FEELIKRYPNSEYAEEAKKRLAELRNR----LAEHELYIAR  149 (203)
T ss_dssp             HHHHHHHH-TT---HHHHHHHHH----------------HHHHHHH-TTSTTHHHHHHHHHHHHHH----HHHHHHHHHH
T ss_pred             HHhCccchhcccChHHHHHHHHH----------------HHHHHHHCcCchHHHHHHHHHHHHHHH----HHHHHHHHHH
Confidence            1             111223333                344444444455566666655555432    1111233567


Q ss_pred             HHHccCcHHHHHHHHHHHHHcCCCCcH----hhHHHHHHHHhhchhHHHHHH
Q 021791          234 GLCEKQKWKEACQYFVEMIEKGLLPQK----VTFETLYRGLIQSDMLRTWRR  281 (307)
Q Consensus       234 ~~~~~g~~~~a~~~~~~~~~~~~~p~~----~~~~~l~~~~~~~g~~~~a~~  281 (307)
                      .|.+.|.+..|..-++.+++.  -|+.    .....++.++.+.|..+.+..
T Consensus       150 ~Y~~~~~y~aA~~r~~~v~~~--yp~t~~~~~al~~l~~~y~~l~~~~~a~~  199 (203)
T PF13525_consen  150 FYYKRGKYKAAIIRFQYVIEN--YPDTPAAEEALARLAEAYYKLGLKQAADT  199 (203)
T ss_dssp             HHHCTT-HHHHHHHHHHHHHH--STTSHHHHHHHHHHHHHHHHTT-HHHHHH
T ss_pred             HHHHcccHHHHHHHHHHHHHH--CCCCchHHHHHHHHHHHHHHhCChHHHHH
Confidence            789999999999999999987  2333    356778889999998875543

>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]

Probab=97.84  E-value=0.0049  Score=44.08  Aligned_cols=136  Identities=12%  Similarity=0.094  Sum_probs=101.0

Q ss_pred             CCCchhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHhcCCChhHHHHHHHHHhhcCCCCccHHHHH
Q 021791          115 ICPTVATYTSVVKCLCSCGRIEDAEELLGEMVRNGVSPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDDLCVPNIHTYN  194 (307)
Q Consensus       115 ~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~  194 (307)
                      ..|+...--.|..+....|+..+|...|++....-..-|......+.++....+++..|...++.+.+.+.-..++.+.-
T Consensus        85 ~ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~L  164 (251)
T COG4700          85 IAPTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGHL  164 (251)
T ss_pred             hchhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCchH
Confidence            35677777778889999999999999999988765666778888888888899999999999988877642222344556


Q ss_pred             HHHHHHHhcCcHHHHHHHHHHHhhCCCCCCHHhHHHHHHHHHccCcHHHHHHHHHHHH
Q 021791          195 ILIGMFMALNRMDMVREIWNHVKGSELGLDLDSYTMLIHGLCEKQKWKEACQYFVEMI  252 (307)
Q Consensus       195 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~  252 (307)
                      .+.+.+...|+..+|+..|+.....  -|+...-......+.+.|+.+++..-+..+.
T Consensus       165 l~aR~laa~g~~a~Aesafe~a~~~--ypg~~ar~~Y~e~La~qgr~~ea~aq~~~v~  220 (251)
T COG4700         165 LFARTLAAQGKYADAESAFEVAISY--YPGPQARIYYAEMLAKQGRLREANAQYVAVV  220 (251)
T ss_pred             HHHHHHHhcCCchhHHHHHHHHHHh--CCCHHHHHHHHHHHHHhcchhHHHHHHHHHH
Confidence            6778888899999999999988876  4555554444555667776666655554443

>PF12688 TPR_5: Tetratrico peptide repeat

Probab=97.80  E-value=0.0033  Score=42.21  Aligned_cols=56  Identities=21%  Similarity=0.167  Sum_probs=26.0

Q ss_pred             HHHHhcCChHHHHHHHHHHHhCCCCCC--HhhHHHHHHHHhcCCChhHHHHHHHHHhh
Q 021791          127 KCLCSCGRIEDAEELLGEMVRNGVSPS--AETYNCFFKEYRGRKDANGAMKLYRQMKE  182 (307)
Q Consensus       127 ~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~  182 (307)
                      .++-..|+.++|+.+|++....|....  ...+-.+...+...|++++|..++++...
T Consensus         9 ~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~   66 (120)
T PF12688_consen    9 WAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALE   66 (120)
T ss_pred             HHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            334444555555555555554443322  12333344444555555555555554444

>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]

Probab=97.80  E-value=0.0036  Score=48.30  Aligned_cols=121  Identities=14%  Similarity=0.158  Sum_probs=91.3

Q ss_pred             HHHHhCCCCCCHhhHHHHHHHHhcCCChhHHHHHHHHHhhcCCCCccHHHHHHHHHHHHhcC---cHHHHHHHHHHHhhC
Q 021791          143 GEMVRNGVSPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDDLCVPNIHTYNILIGMFMALN---RMDMVREIWNHVKGS  219 (307)
Q Consensus       143 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~---~~~~a~~~~~~~~~~  219 (307)
                      +.-...++. |...|..|...|...|+.+.|..-|....+..  ++|...+..+..++....   ...++..+++++...
T Consensus       146 e~~L~~nP~-d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~--g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~  222 (287)
T COG4235         146 ETHLQQNPG-DAEGWDLLGRAYMALGRASDALLAYRNALRLA--GDNPEILLGLAEALYYQAGQQMTAKARALLRQALAL  222 (287)
T ss_pred             HHHHHhCCC-CchhHHHHHHHHHHhcchhHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhc
Confidence            333334433 78899999999999999999999999988876  577777777777766543   456788899999887


Q ss_pred             CCCCCHHhHHHHHHHHHccCcHHHHHHHHHHHHHcCCCCcHhhHHHHHHH
Q 021791          220 ELGLDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRG  269 (307)
Q Consensus       220 ~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~  269 (307)
                      ... |+.+...+...+...|++.+|...|+.|++.  -|....+..++..
T Consensus       223 D~~-~iral~lLA~~afe~g~~~~A~~~Wq~lL~~--lp~~~~rr~~ie~  269 (287)
T COG4235         223 DPA-NIRALSLLAFAAFEQGDYAEAAAAWQMLLDL--LPADDPRRSLIER  269 (287)
T ss_pred             CCc-cHHHHHHHHHHHHHcccHHHHHHHHHHHHhc--CCCCCchHHHHHH
Confidence            533 7777788888889999999999999999976  3344445555543

>CHL00033 ycf3 photosystem I assembly protein Ycf3

Probab=97.76  E-value=0.001  Score=48.05  Aligned_cols=65  Identities=11%  Similarity=-0.081  Sum_probs=33.0

Q ss_pred             HHHHHHHHHHHHhcCCchhHHHHHHHHHHcCCCC--chhhHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 021791           84 VTSFSIVLHVYSRAHKPQLSLDKLNFMKEKGICP--TVATYTSVVKCLCSCGRIEDAEELLGEMVRN  148 (307)
Q Consensus        84 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~  148 (307)
                      ...|..+...+...|++++|...|+........+  ...++..+...+...|++++|...++.....
T Consensus        35 a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~  101 (168)
T CHL00033         35 AFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALER  101 (168)
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence            3344445555555555555555555554432111  1234555555555556666666555555543

>KOG2796 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.75  E-value=0.0095  Score=45.12  Aligned_cols=130  Identities=10%  Similarity=0.014  Sum_probs=66.9

Q ss_pred             HHHHHHHHhcCCchhHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHhhHHHH-----HH
Q 021791           88 SIVLHVYSRAHKPQLSLDKLNFMKEKGICPTVATYTSVVKCLCSCGRIEDAEELLGEMVRNGVSPSAETYNCF-----FK  162 (307)
Q Consensus        88 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l-----~~  162 (307)
                      +.++.+....+.+.-....+.+.++...+.++.....+.+.-.+.|+.+.|...|++..+..-+.+..+.+.+     ..
T Consensus       181 y~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a~  260 (366)
T KOG2796|consen  181 YSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSAF  260 (366)
T ss_pred             HHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhhh
Confidence            4444455555556666666666666554445555555666666666666666666655543222232222222     22


Q ss_pred             HHhcCCChhHHHHHHHHHhhcCCCCccHHHHHHHHHHHHhcCcHHHHHHHHHHHhhC
Q 021791          163 EYRGRKDANGAMKLYRQMKEDDLCVPNIHTYNILIGMFMALNRMDMVREIWNHVKGS  219 (307)
Q Consensus       163 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~  219 (307)
                      .|.-.+++..|...+.++...+  +.|....|.-.-+..-.|+...|.+.++.|...
T Consensus       261 i~lg~nn~a~a~r~~~~i~~~D--~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~  315 (366)
T KOG2796|consen  261 LHLGQNNFAEAHRFFTEILRMD--PRNAVANNNKALCLLYLGKLKDALKQLEAMVQQ  315 (366)
T ss_pred             heecccchHHHHHHHhhccccC--CCchhhhchHHHHHHHHHHHHHHHHHHHHHhcc
Confidence            3444555566666665555544  233333333333333355666666666666654

>KOG0553 consensus TPR repeat-containing protein [General function prediction only]

Probab=97.74  E-value=0.00065  Score=52.09  Aligned_cols=102  Identities=17%  Similarity=0.115  Sum_probs=81.1

Q ss_pred             HHHHhcCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHhcCCChhHHHHHHHHHhhcCCCCccHHHHHHHHHHHHhcCcH
Q 021791          127 KCLCSCGRIEDAEELLGEMVRNGVSPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDDLCVPNIHTYNILIGMFMALNRM  206 (307)
Q Consensus       127 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~  206 (307)
                      +-..+.+++++|+..|.+.+...++ |.+.|..=..+|.+.|.++.|++-.+.....+  +-.+.+|..|..+|...|++
T Consensus        89 N~~m~~~~Y~eAv~kY~~AI~l~P~-nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iD--p~yskay~RLG~A~~~~gk~  165 (304)
T KOG0553|consen   89 NKLMKNKDYQEAVDKYTEAIELDPT-NAVYYCNRAAAYSKLGEYEDAVKDCESALSID--PHYSKAYGRLGLAYLALGKY  165 (304)
T ss_pred             HHHHHhhhHHHHHHHHHHHHhcCCC-cchHHHHHHHHHHHhcchHHHHHHHHHHHhcC--hHHHHHHHHHHHHHHccCcH
Confidence            3467788999999999998887554 77778888888999999999988888888775  56678899999999999999


Q ss_pred             HHHHHHHHHHhhCCCCCCHHhHHHHHH
Q 021791          207 DMVREIWNHVKGSELGLDLDSYTMLIH  233 (307)
Q Consensus       207 ~~a~~~~~~~~~~~~~~~~~~~~~li~  233 (307)
                      ++|++.|+...+.  .|+-.+|-.=+.
T Consensus       166 ~~A~~aykKaLel--dP~Ne~~K~nL~  190 (304)
T KOG0553|consen  166 EEAIEAYKKALEL--DPDNESYKSNLK  190 (304)
T ss_pred             HHHHHHHHhhhcc--CCCcHHHHHHHH
Confidence            9999998888875  566655544443

>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A

Probab=97.71  E-value=0.00022  Score=42.73  Aligned_cols=50  Identities=18%  Similarity=0.250  Sum_probs=19.9

Q ss_pred             CChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHhcCCChhHHHHHHHHHhhc
Q 021791          133 GRIEDAEELLGEMVRNGVSPSAETYNCFFKEYRGRKDANGAMKLYRQMKED  183 (307)
Q Consensus       133 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~  183 (307)
                      |++++|.++|+++....+. +...+..+..+|.+.|++++|..+++.+...
T Consensus         5 ~~~~~A~~~~~~~l~~~p~-~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~   54 (68)
T PF14559_consen    5 GDYDEAIELLEKALQRNPD-NPEARLLLAQCYLKQGQYDEAEELLERLLKQ   54 (68)
T ss_dssp             THHHHHHHHHHHHHHHTTT-SHHHHHHHHHHHHHTT-HHHHHHHHHCCHGG
T ss_pred             cCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence            4444444444444333222 3333334444444444444444444444433

...

>PRK10866 outer membrane biogenesis protein BamD; Provisional

Probab=97.68  E-value=0.014  Score=44.84  Aligned_cols=170  Identities=11%  Similarity=0.016  Sum_probs=97.0

Q ss_pred             HHHHHHHHHHHHHHHhcCCCCCHHH---HHHHHHHHHhcCCchhHHHHHHHHHHcCCCCchhhHHHHHHHHHh--c----
Q 021791           62 EKTIRNAEKVFDEMRVRGIEPDVTS---FSIVLHVYSRAHKPQLSLDKLNFMKEKGICPTVATYTSVVKCLCS--C----  132 (307)
Q Consensus        62 ~~~~~~a~~~~~~~~~~~~~~~~~~---~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~--~----  132 (307)
                      .|++++|.+.|+.+...-.. +...   .-.+..++.+.++++.|...+++..+........-+...+.+.+.  .    
T Consensus        45 ~g~y~~Ai~~f~~l~~~yP~-s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~Y~~g~~~~~~~~~~  123 (243)
T PRK10866         45 DGNWKQAITQLEALDNRYPF-GPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVLYMRGLTNMALDDSA  123 (243)
T ss_pred             CCCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHHHHHHHhhhhcchhh
Confidence            57889999999999876322 2222   245667888999999999999999887433233333333433321  1    


Q ss_pred             -----------CCh---HHHHHHHHHHHhCCCCCCHhhHHHHHHHHhcCCChhHHHHHHHHHhhcCCCCccHHHHHHHHH
Q 021791          133 -----------GRI---EDAEELLGEMVRNGVSPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDDLCVPNIHTYNILIG  198 (307)
Q Consensus       133 -----------~~~---~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~  198 (307)
                                 .+.   .+|...|+.+.+.               |=.+.-..+|...+..+...    .-..- -.+..
T Consensus       124 ~~~~~~~~~~~rD~~~~~~A~~~~~~li~~---------------yP~S~ya~~A~~rl~~l~~~----la~~e-~~ia~  183 (243)
T PRK10866        124 LQGFFGVDRSDRDPQHARAAFRDFSKLVRG---------------YPNSQYTTDATKRLVFLKDR----LAKYE-LSVAE  183 (243)
T ss_pred             hhhccCCCccccCHHHHHHHHHHHHHHHHH---------------CcCChhHHHHHHHHHHHHHH----HHHHH-HHHHH
Confidence                       122   2344555555543               22222233444333333221    11111 14556


Q ss_pred             HHHhcCcHHHHHHHHHHHhhC--CCCCCHHhHHHHHHHHHccCcHHHHHHHHHHHH
Q 021791          199 MFMALNRMDMVREIWNHVKGS--ELGLDLDSYTMLIHGLCEKQKWKEACQYFVEMI  252 (307)
Q Consensus       199 ~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~  252 (307)
                      .|.+.|.+..|..-++.+.+.  +.+........++.+|...|..++|..+...+.
T Consensus       184 ~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l~  239 (243)
T PRK10866        184 YYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKIIA  239 (243)
T ss_pred             HHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHHh
Confidence            677777777777777776654  122234455666777777777777777666543

>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.68  E-value=0.026  Score=47.74  Aligned_cols=163  Identities=11%  Similarity=0.042  Sum_probs=109.8

Q ss_pred             hhHHHHHHHHHhc--CChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHhcCCChhHHHHHHH--------HHhhcCCCCcc
Q 021791          120 ATYTSVVKCLCSC--GRIEDAEELLGEMVRNGVSPSAETYNCFFKEYRGRKDANGAMKLYR--------QMKEDDLCVPN  189 (307)
Q Consensus       120 ~~~~~ll~~~~~~--~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~--------~~~~~~~~~~~  189 (307)
                      ..+.+++..+.+.  .....+.+++...-+....-...+.-.++......|+++.|.+++.        .+.+.+. .| 
T Consensus       340 ~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~~p~~s~~v~L~~aQl~is~gn~~~A~~il~~~~~~~~ss~~~~~~-~P-  417 (652)
T KOG2376|consen  340 SLFPILLQEATKVREKKHKKAIELLLQFADGHPEKSKVVLLLRAQLKISQGNPEVALEILSLFLESWKSSILEAKH-LP-  417 (652)
T ss_pred             HHHHHHHHHHHHHHHHHHhhhHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhhhhhhhhcc-Ch-
Confidence            3445555544432  2467788888777766444345666777888899999999999999        5555543 34 


Q ss_pred             HHHHHHHHHHHHhcCcHHHHHHHHHHHhhC--CCCCCHH----hHHHHHHHHHccCcHHHHHHHHHHHHHcCCCCcHhhH
Q 021791          190 IHTYNILIGMFMALNRMDMVREIWNHVKGS--ELGLDLD----SYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTF  263 (307)
Q Consensus       190 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~----~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~  263 (307)
                       .+...+...+.+.++-+.|..++......  .-.+...    ++..+...-.+.|+-++|..+++++.+. .++|..+.
T Consensus       418 -~~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~G~~~ea~s~leel~k~-n~~d~~~l  495 (652)
T KOG2376|consen  418 -GTVGAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLRHGNEEEASSLLEELVKF-NPNDTDLL  495 (652)
T ss_pred             -hHHHHHHHHHHhccCCccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHhcCchHHHHHHHHHHHHh-CCchHHHH
Confidence             45566777777777777777777665431  0011112    2333444445779999999999999986 36788899


Q ss_pred             HHHHHHHhhchhHHHHHHHHHHhh
Q 021791          264 ETLYRGLIQSDMLRTWRRLKKKLD  287 (307)
Q Consensus       264 ~~l~~~~~~~g~~~~a~~~~~~~~  287 (307)
                      ..++.+|+.. +.+.|+.+-+++.
T Consensus       496 ~~lV~a~~~~-d~eka~~l~k~L~  518 (652)
T KOG2376|consen  496 VQLVTAYARL-DPEKAESLSKKLP  518 (652)
T ss_pred             HHHHHHHHhc-CHHHHHHHhhcCC
Confidence            9999998876 4677777766654

>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A

Probab=97.67  E-value=0.00026  Score=42.35  Aligned_cols=52  Identities=10%  Similarity=0.172  Sum_probs=25.2

Q ss_pred             hcCcHHHHHHHHHHHhhCCCCCCHHhHHHHHHHHHccCcHHHHHHHHHHHHHc
Q 021791          202 ALNRMDMVREIWNHVKGSELGLDLDSYTMLIHGLCEKQKWKEACQYFVEMIEK  254 (307)
Q Consensus       202 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~  254 (307)
                      ..|++++|.+.++.+...... +...+..+..+|.+.|++++|..+++++...
T Consensus         3 ~~~~~~~A~~~~~~~l~~~p~-~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~   54 (68)
T PF14559_consen    3 KQGDYDEAIELLEKALQRNPD-NPEARLLLAQCYLKQGQYDEAEELLERLLKQ   54 (68)
T ss_dssp             HTTHHHHHHHHHHHHHHHTTT-SHHHHHHHHHHHHHTT-HHHHHHHHHCCHGG
T ss_pred             hccCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence            345555555555555444222 4444445555555555555555555555443

...

>KOG2041 consensus WD40 repeat protein [General function prediction only]

Probab=97.65  E-value=0.0083  Score=51.69  Aligned_cols=214  Identities=11%  Similarity=0.050  Sum_probs=125.4

Q ss_pred             ccHHHHHHHHHHHHhcCchhhHHHHHHHHHhcCCCCcHHHHHHHHHHHHhhCCCCcchhhHHHHHHHHHHHHHHHhcCCC
Q 021791            2 PNVKMYTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPNERFEKTIRNAEKVFDEMRVRGIE   81 (307)
Q Consensus         2 p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~   81 (307)
                      |.+..|..+.......-.++.|+..|-+....   |.+.....|-...++.-+..+...+-|.+++|+++|-+|....  
T Consensus       690 PHprLWrllAe~Al~Kl~l~tAE~AFVrc~dY---~Gik~vkrl~~i~s~~~q~aei~~~~g~feeaek~yld~drrD--  764 (1189)
T KOG2041|consen  690 PHPRLWRLLAEYALFKLALDTAEHAFVRCGDY---AGIKLVKRLRTIHSKEQQRAEISAFYGEFEEAEKLYLDADRRD--  764 (1189)
T ss_pred             CchHHHHHHHHHHHHHHhhhhHhhhhhhhccc---cchhHHHHhhhhhhHHHHhHhHhhhhcchhHhhhhhhccchhh--
Confidence            55666766666666666666676666655432   1221111121122221111122223678888988888776552  


Q ss_pred             CCHHHHHHHHHHHHhcCCchhHHHHHHHHHHc-CCCCchhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHhhHHHH
Q 021791           82 PDVTSFSIVLHVYSRAHKPQLSLDKLNFMKEK-GICPTVATYTSVVKCLCSCGRIEDAEELLGEMVRNGVSPSAETYNCF  160 (307)
Q Consensus        82 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l  160 (307)
                             ..+..+.+.|||-.+.++++.--.- .-..-...|+.+...++....++.|.+.|..-...         ...
T Consensus       765 -------LAielr~klgDwfrV~qL~r~g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~~~~~---------e~~  828 (1189)
T KOG2041|consen  765 -------LAIELRKKLGDWFRVYQLIRNGGSDDDDEGKEDAFRNIGETFAEMMEWEEAAKYYSYCGDT---------ENQ  828 (1189)
T ss_pred             -------hhHHHHHhhhhHHHHHHHHHccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccch---------HhH
Confidence                   2455667778877766665431100 00112456788888888888888888887664321         234


Q ss_pred             HHHHhcCCChhHHHHHHHHHhhcCCCCccHHHHHHHHHHHHhcCcHHHHHHHHHHHhhCCCCCCHHhHHHHHHHHHccCc
Q 021791          161 FKEYRGRKDANGAMKLYRQMKEDDLCVPNIHTYNILIGMFMALNRMDMVREIWNHVKGSELGLDLDSYTMLIHGLCEKQK  240 (307)
Q Consensus       161 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~  240 (307)
                      +.++.+..++++...+.+.+      +.+....-.+.+++.+.|.-++|.+.+-+...    |     ...+..|...++
T Consensus       829 ~ecly~le~f~~LE~la~~L------pe~s~llp~~a~mf~svGMC~qAV~a~Lr~s~----p-----kaAv~tCv~LnQ  893 (1189)
T KOG2041|consen  829 IECLYRLELFGELEVLARTL------PEDSELLPVMADMFTSVGMCDQAVEAYLRRSL----P-----KAAVHTCVELNQ  893 (1189)
T ss_pred             HHHHHHHHhhhhHHHHHHhc------CcccchHHHHHHHHHhhchHHHHHHHHHhccC----c-----HHHHHHHHHHHH
Confidence            56666666676666665555      34455666778888888888888776654332    1     234566777777


Q ss_pred             HHHHHHHHHHH
Q 021791          241 WKEACQYFVEM  251 (307)
Q Consensus       241 ~~~a~~~~~~~  251 (307)
                      |.+|.++-++.
T Consensus       894 W~~avelaq~~  904 (1189)
T KOG2041|consen  894 WGEAVELAQRF  904 (1189)
T ss_pred             HHHHHHHHHhc
Confidence            77777776654

>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B

Probab=97.63  E-value=0.00058  Score=40.41  Aligned_cols=55  Identities=13%  Similarity=0.243  Sum_probs=27.5

Q ss_pred             HHHHhcCcHHHHHHHHHHHhhCCCCCCHHhHHHHHHHHHccCcHHHHHHHHHHHHH
Q 021791          198 GMFMALNRMDMVREIWNHVKGSELGLDLDSYTMLIHGLCEKQKWKEACQYFVEMIE  253 (307)
Q Consensus       198 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~  253 (307)
                      ..+...|++++|...|+.+...... +...+..+..++...|++++|..+|+++++
T Consensus         5 ~~~~~~g~~~~A~~~~~~~l~~~P~-~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~   59 (65)
T PF13432_consen    5 RALYQQGDYDEAIAAFEQALKQDPD-NPEAWYLLGRILYQQGRYDEALAYYERALE   59 (65)
T ss_dssp             HHHHHCTHHHHHHHHHHHHHCCSTT-HHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred             HHHHHcCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            3444555555555555555554311 444455555555555555555555555543

>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production

Probab=97.61  E-value=0.004  Score=43.77  Aligned_cols=71  Identities=20%  Similarity=0.199  Sum_probs=50.4

Q ss_pred             HHHHHHHHHHhcCCchhHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCChHHHHHHHHHHHh-----CCCCCCHhhH
Q 021791           86 SFSIVLHVYSRAHKPQLSLDKLNFMKEKGICPTVATYTSVVKCLCSCGRIEDAEELLGEMVR-----NGVSPSAETY  157 (307)
Q Consensus        86 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~-----~~~~~~~~~~  157 (307)
                      ....++..+...|+++.|..+.+.+..... .+...|..+|.+|...|+...|.++|+.+..     .|+.|+..+-
T Consensus        64 ~~~~l~~~~~~~~~~~~a~~~~~~~l~~dP-~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~~  139 (146)
T PF03704_consen   64 ALERLAEALLEAGDYEEALRLLQRALALDP-YDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPETR  139 (146)
T ss_dssp             HHHHHHHHHHHTT-HHHHHHHHHHHHHHST-T-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHHH
T ss_pred             HHHHHHHHHHhccCHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHHH
Confidence            445567777888899999999988888754 3788888999999999999999998887754     3777776654

It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.

>KOG0553 consensus TPR repeat-containing protein [General function prediction only]

Probab=97.60  E-value=0.0016  Score=50.00  Aligned_cols=98  Identities=16%  Similarity=0.138  Sum_probs=81.8

Q ss_pred             HHHhcCCchhHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHhcCCChhH
Q 021791           93 VYSRAHKPQLSLDKLNFMKEKGICPTVATYTSVVKCLCSCGRIEDAEELLGEMVRNGVSPSAETYNCFFKEYRGRKDANG  172 (307)
Q Consensus        93 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  172 (307)
                      -..+.+++++|+..|.+.++.... |..-|..-..+|.+.|.++.|++=.+..+..+.. ...+|..|-.+|...|++++
T Consensus        90 ~~m~~~~Y~eAv~kY~~AI~l~P~-nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~-yskay~RLG~A~~~~gk~~~  167 (304)
T KOG0553|consen   90 KLMKNKDYQEAVDKYTEAIELDPT-NAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPH-YSKAYGRLGLAYLALGKYEE  167 (304)
T ss_pred             HHHHhhhHHHHHHHHHHHHhcCCC-cchHHHHHHHHHHHhcchHHHHHHHHHHHhcChH-HHHHHHHHHHHHHccCcHHH
Confidence            356788999999999999998544 7888888999999999999999988888876443 56799999999999999999


Q ss_pred             HHHHHHHHhhcCCCCccHHHHHH
Q 021791          173 AMKLYRQMKEDDLCVPNIHTYNI  195 (307)
Q Consensus       173 a~~~~~~~~~~~~~~~~~~~~~~  195 (307)
                      |.+.|+...+.   .|+-.+|-.
T Consensus       168 A~~aykKaLel---dP~Ne~~K~  187 (304)
T KOG0553|consen  168 AIEAYKKALEL---DPDNESYKS  187 (304)
T ss_pred             HHHHHHhhhcc---CCCcHHHHH
Confidence            99999999887   455555543

>PF12688 TPR_5: Tetratrico peptide repeat

Probab=97.57  E-value=0.0081  Score=40.34  Aligned_cols=93  Identities=11%  Similarity=0.048  Sum_probs=62.0

Q ss_pred             HHHHHHhcCCchhHHHHHHHHHHcCCCCc--hhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCC--CCHhhHHHHHHHHh
Q 021791           90 VLHVYSRAHKPQLSLDKLNFMKEKGICPT--VATYTSVVKCLCSCGRIEDAEELLGEMVRNGVS--PSAETYNCFFKEYR  165 (307)
Q Consensus        90 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~l~~~~~  165 (307)
                      +..++-..|+.++|+.+|++....|...+  ...+-.+...+...|++++|..++++.......  .+......+..++.
T Consensus         7 ~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L~   86 (120)
T PF12688_consen    7 LAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALALY   86 (120)
T ss_pred             HHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHH
Confidence            44566678888888888888888776543  335556777788888888888888887764211  01222223334567


Q ss_pred             cCCChhHHHHHHHHHhh
Q 021791          166 GRKDANGAMKLYRQMKE  182 (307)
Q Consensus       166 ~~~~~~~a~~~~~~~~~  182 (307)
                      ..|+.++|+..+-....
T Consensus        87 ~~gr~~eAl~~~l~~la  103 (120)
T PF12688_consen   87 NLGRPKEALEWLLEALA  103 (120)
T ss_pred             HCCCHHHHHHHHHHHHH
Confidence            77888888887766553

>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]

Probab=97.56  E-value=0.01  Score=45.83  Aligned_cols=113  Identities=16%  Similarity=0.075  Sum_probs=89.5

Q ss_pred             CCchhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHhcC---CChhHHHHHHHHHhhcCCCCccHHH
Q 021791          116 CPTVATYTSVVKCLCSCGRIEDAEELLGEMVRNGVSPSAETYNCFFKEYRGR---KDANGAMKLYRQMKEDDLCVPNIHT  192 (307)
Q Consensus       116 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---~~~~~a~~~~~~~~~~~~~~~~~~~  192 (307)
                      +-|...|..|...|...|+.+.|...|....+... ++...+..+..++...   ....++..+|++....+  +.|..+
T Consensus       153 P~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g-~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D--~~~ira  229 (287)
T COG4235         153 PGDAEGWDLLGRAYMALGRASDALLAYRNALRLAG-DNPEILLGLAEALYYQAGQQMTAKARALLRQALALD--PANIRA  229 (287)
T ss_pred             CCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcC--CccHHH
Confidence            34889999999999999999999999999887633 3666666666654433   34578999999999987  678888


Q ss_pred             HHHHHHHHHhcCcHHHHHHHHHHHhhCCCCCCHHhHHHHHH
Q 021791          193 YNILIGMFMALNRMDMVREIWNHVKGSELGLDLDSYTMLIH  233 (307)
Q Consensus       193 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~  233 (307)
                      ...|...+...|++.+|...|+.|.+..  |....+..+|+
T Consensus       230 l~lLA~~afe~g~~~~A~~~Wq~lL~~l--p~~~~rr~~ie  268 (287)
T COG4235         230 LSLLAFAAFEQGDYAEAAAAWQMLLDLL--PADDPRRSLIE  268 (287)
T ss_pred             HHHHHHHHHHcccHHHHHHHHHHHHhcC--CCCCchHHHHH
Confidence            8899999999999999999999999873  33334444444

>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex

Probab=97.56  E-value=0.028  Score=45.02  Aligned_cols=107  Identities=14%  Similarity=0.113  Sum_probs=78.4

Q ss_pred             hhHHHHHHHHhcCCChhHHHHHHHHHhhcCCCCccHHHHHHHHHHHHhcCcHHHHHHHHHHHhhCCCCCCHHhHHHHHHH
Q 021791          155 ETYNCFFKEYRGRKDANGAMKLYRQMKEDDLCVPNIHTYNILIGMFMALNRMDMVREIWNHVKGSELGLDLDSYTMLIHG  234 (307)
Q Consensus       155 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~  234 (307)
                      .+.+..+.-+...|+...|.++-.+..     .|+..-|...+.+++..++|++-.++...      +-++.-|..++.+
T Consensus       178 ~Sl~~Ti~~li~~~~~k~A~kl~k~Fk-----v~dkrfw~lki~aLa~~~~w~eL~~fa~s------kKsPIGyepFv~~  246 (319)
T PF04840_consen  178 LSLNDTIRKLIEMGQEKQAEKLKKEFK-----VPDKRFWWLKIKALAENKDWDELEKFAKS------KKSPIGYEPFVEA  246 (319)
T ss_pred             CCHHHHHHHHHHCCCHHHHHHHHHHcC-----CcHHHHHHHHHHHHHhcCCHHHHHHHHhC------CCCCCChHHHHHH
Confidence            355566777788888888888877764     78999999999999999999988876432      1256789999999


Q ss_pred             HHccCcHHHHHHHHHHHHHcCCCCcHhhHHHHHHHHhhchhHHHHHHH
Q 021791          235 LCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRL  282 (307)
Q Consensus       235 ~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~  282 (307)
                      |.+.|+..+|..++.++     ++     ..-+..|.+.|++.+|.+.
T Consensus       247 ~~~~~~~~eA~~yI~k~-----~~-----~~rv~~y~~~~~~~~A~~~  284 (319)
T PF04840_consen  247 CLKYGNKKEASKYIPKI-----PD-----EERVEMYLKCGDYKEAAQE  284 (319)
T ss_pred             HHHCCCHHHHHHHHHhC-----Ch-----HHHHHHHHHCCCHHHHHHH
Confidence            99999999999888872     21     2234445555555555444

Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm

>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A

Probab=97.56  E-value=0.00058  Score=40.96  Aligned_cols=63  Identities=11%  Similarity=0.115  Sum_probs=35.7

Q ss_pred             HHHHHHHHHHHHhcCCchhHHHHHHHHHHcCCCCchhhHHHHHHHHHhcC-ChHHHHHHHHHHHh
Q 021791           84 VTSFSIVLHVYSRAHKPQLSLDKLNFMKEKGICPTVATYTSVVKCLCSCG-RIEDAEELLGEMVR  147 (307)
Q Consensus        84 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~-~~~~a~~~~~~~~~  147 (307)
                      +.+|..+...+...|++++|+..|++..+.... +...|..+..+|...| ++++|+..+++..+
T Consensus         3 a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~-~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~   66 (69)
T PF13414_consen    3 AEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPN-NAEAYYNLGLAYMKLGKDYEEAIEDFEKALK   66 (69)
T ss_dssp             HHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHHTTTHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHhCccHHHHHHHHHHHHH
Confidence            445555555666666666666666665555322 4555555555666665 45666666555544

...

>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B

Probab=97.54  E-value=0.00066  Score=40.16  Aligned_cols=54  Identities=15%  Similarity=0.192  Sum_probs=26.4

Q ss_pred             HHhcCCChhHHHHHHHHHhhcCCCCccHHHHHHHHHHHHhcCcHHHHHHHHHHHhh
Q 021791          163 EYRGRKDANGAMKLYRQMKEDDLCVPNIHTYNILIGMFMALNRMDMVREIWNHVKG  218 (307)
Q Consensus       163 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~  218 (307)
                      .+...|++++|...|+++.+..  +-+...+..+..++...|++++|...++.+.+
T Consensus         6 ~~~~~g~~~~A~~~~~~~l~~~--P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~   59 (65)
T PF13432_consen    6 ALYQQGDYDEAIAAFEQALKQD--PDNPEAWYLLGRILYQQGRYDEALAYYERALE   59 (65)
T ss_dssp             HHHHCTHHHHHHHHHHHHHCCS--TTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred             HHHHcCCHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            3444555555555555555443  33444455555555555555555555555443

>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A

Probab=97.52  E-value=0.00078  Score=40.40  Aligned_cols=60  Identities=12%  Similarity=0.171  Sum_probs=25.9

Q ss_pred             HHHHHHHHHHhcCcHHHHHHHHHHHhhCCCCCCHHhHHHHHHHHHccC-cHHHHHHHHHHHH
Q 021791          192 TYNILIGMFMALNRMDMVREIWNHVKGSELGLDLDSYTMLIHGLCEKQ-KWKEACQYFVEMI  252 (307)
Q Consensus       192 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g-~~~~a~~~~~~~~  252 (307)
                      +|..+...+...|++++|+..|++..+.+.. +...|..+..++...| ++++|+..+++.+
T Consensus         5 ~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~-~~~~~~~~g~~~~~~~~~~~~A~~~~~~al   65 (69)
T PF13414_consen    5 AWYNLGQIYFQQGDYEEAIEYFEKAIELDPN-NAEAYYNLGLAYMKLGKDYEEAIEDFEKAL   65 (69)
T ss_dssp             HHHHHHHHHHHTTHHHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHHTTTHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHhCccHHHHHHHHHHHH
Confidence            3444444444444444444444444443211 3334444444444444 3444444444443

...

>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]

Probab=97.48  E-value=0.033  Score=47.79  Aligned_cols=251  Identities=12%  Similarity=0.133  Sum_probs=131.5

Q ss_pred             HHHHHHHHHhcCchhhHHHH---------HHHHHhcCCCCcHHHHHHHHHHHHhhCCCCcchhhHHHHHHHHHHHHHHHh
Q 021791            7 YTSLIYGWCKINRIDMAERF---------LGEMIERGVEPNVVTYNVLLNGVCRRASLHPNERFEKTIRNAEKVFDEMRV   77 (307)
Q Consensus         7 ~~~li~~~~~~g~~~~a~~~---------~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~   77 (307)
                      +.+=+..|...|.+++|.++         |+.+...  ..+.-.+++.=.+|.+..+        -.+-+...-++++.+
T Consensus       559 ~~~~m~q~Ieag~f~ea~~iaclgVv~~DW~~LA~~--ALeAL~f~~ARkAY~rVRd--------l~~L~li~EL~~~k~  628 (1081)
T KOG1538|consen  559 QSAPMYQYIERGLFKEAYQIACLGVTDTDWRELAME--ALEALDFETARKAYIRVRD--------LRYLELISELEERKK  628 (1081)
T ss_pred             ccccchhhhhccchhhhhcccccceecchHHHHHHH--HHhhhhhHHHHHHHHHHhc--------cHHHHHHHHHHHHHh
Confidence            34445567777888777654         2222221  1234455566667766432        234455555677888


Q ss_pred             cCCCCCHHHHHHHHHHHHhcCCchhHHHHHHHHHHcCCCCc-hhhH-----HHHHHHHHhcCChHHHHHHHHHHHhC--C
Q 021791           78 RGIEPDVTSFSIVLHVYSRAHKPQLSLDKLNFMKEKGICPT-VATY-----TSVVKCLCSCGRIEDAEELLGEMVRN--G  149 (307)
Q Consensus        78 ~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~-----~~ll~~~~~~~~~~~a~~~~~~~~~~--~  149 (307)
                      .|-.|+...   +...++-.|.+.+|-++|.+-   |...- ...|     .-...-+...|..++-..+..+-.+.  +
T Consensus       629 rge~P~~iL---lA~~~Ay~gKF~EAAklFk~~---G~enRAlEmyTDlRMFD~aQE~~~~g~~~eKKmL~RKRA~WAr~  702 (1081)
T KOG1538|consen  629 RGETPNDLL---LADVFAYQGKFHEAAKLFKRS---GHENRALEMYTDLRMFDYAQEFLGSGDPKEKKMLIRKRADWARN  702 (1081)
T ss_pred             cCCCchHHH---HHHHHHhhhhHHHHHHHHHHc---CchhhHHHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHhhh
Confidence            888888754   344556667777777766542   22100 0000     01222333444444333333221111  1


Q ss_pred             CCCCHhhHHHHHHHHhcCCChhHHHHHHHH----------HhhcCCCCccHHHHHHHHHHHHhcCcHHHHHHHHHHHhhC
Q 021791          150 VSPSAETYNCFFKEYRGRKDANGAMKLYRQ----------MKEDDLCVPNIHTYNILIGMFMALNRMDMVREIWNHVKGS  219 (307)
Q Consensus       150 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~----------~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~  219 (307)
                      ++-.    .+....+...|+.++|..+.-.          ..+.+  ..+..+...+...+.+...+..|-++|..|-..
T Consensus       703 ~keP----kaAAEmLiSaGe~~KAi~i~~d~gW~d~lidI~rkld--~~ere~l~~~a~ylk~l~~~gLAaeIF~k~gD~  776 (1081)
T KOG1538|consen  703 IKEP----KAAAEMLISAGEHVKAIEICGDHGWVDMLIDIARKLD--KAEREPLLLCATYLKKLDSPGLAAEIFLKMGDL  776 (1081)
T ss_pred             cCCc----HHHHHHhhcccchhhhhhhhhcccHHHHHHHHHhhcc--hhhhhHHHHHHHHHhhccccchHHHHHHHhccH
Confidence            1101    1222333445555555444311          11111  334455666666666677777777777766532


Q ss_pred             CCCCCHHhHHHHHHHHHccCcHHHHHHHHHHHHHcCCCCcHh-----------hHHHHHHHHhhchhHHHHHHHHHHhhh
Q 021791          220 ELGLDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKV-----------TFETLYRGLIQSDMLRTWRRLKKKLDE  288 (307)
Q Consensus       220 ~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~-----------~~~~l~~~~~~~g~~~~a~~~~~~~~~  288 (307)
                               ..+++.....++|.+|..+-++.-+  +.||..           -|...-.+|.+.|+-.+|.++++++..
T Consensus       777 ---------ksiVqlHve~~~W~eAFalAe~hPe--~~~dVy~pyaqwLAE~DrFeEAqkAfhkAGr~~EA~~vLeQLtn  845 (1081)
T KOG1538|consen  777 ---------KSLVQLHVETQRWDEAFALAEKHPE--FKDDVYMPYAQWLAENDRFEEAQKAFHKAGRQREAVQVLEQLTN  845 (1081)
T ss_pred             ---------HHHhhheeecccchHhHhhhhhCcc--ccccccchHHHHhhhhhhHHHHHHHHHHhcchHHHHHHHHHhhh
Confidence                     3456667777888888887776543  233332           234444677888888888888887755


Q ss_pred             cC
Q 021791          289 ES  290 (307)
Q Consensus       289 ~~  290 (307)
                      ..
T Consensus       846 na  847 (1081)
T KOG1538|consen  846 NA  847 (1081)
T ss_pred             hh
Confidence            44

>KOG2796 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.46  E-value=0.028  Score=42.70  Aligned_cols=131  Identities=10%  Similarity=-0.067  Sum_probs=98.7

Q ss_pred             HHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCchhHHHHHHHHHHcCCCCchhhHHHHH-----HHHHhcCChH
Q 021791           62 EKTIRNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHKPQLSLDKLNFMKEKGICPTVATYTSVV-----KCLCSCGRIE  136 (307)
Q Consensus        62 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll-----~~~~~~~~~~  136 (307)
                      .+.+.-...++++.++...+.++.....|++.-.+.||.+.|...|+...+..-..|..+++.++     ..|.-.+++.
T Consensus       190 ~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a~i~lg~nn~a  269 (366)
T KOG2796|consen  190 MKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSAFLHLGQNNFA  269 (366)
T ss_pred             chhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhhhheecccchH
Confidence            67788888889998887667788889999999999999999999999887664444555555444     3456678899


Q ss_pred             HHHHHHHHHHhCCCCCCHhhHHHHHHHHhcCCChhHHHHHHHHHhhcCCCCccHHHHHHH
Q 021791          137 DAEELLGEMVRNGVSPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDDLCVPNIHTYNIL  196 (307)
Q Consensus       137 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l  196 (307)
                      .|...+.++...+.. ++...|.-.-+..-.|+...|.+.++.+.+.   .|...+-+++
T Consensus       270 ~a~r~~~~i~~~D~~-~~~a~NnKALcllYlg~l~DAiK~~e~~~~~---~P~~~l~es~  325 (366)
T KOG2796|consen  270 EAHRFFTEILRMDPR-NAVANNNKALCLLYLGKLKDALKQLEAMVQQ---DPRHYLHESV  325 (366)
T ss_pred             HHHHHHhhccccCCC-chhhhchHHHHHHHHHHHHHHHHHHHHHhcc---CCccchhhhH
Confidence            999999888876544 5555555555555678999999999999887   4554444433

>PRK10803 tol-pal system protein YbgF; Provisional

Probab=97.45  E-value=0.0041  Score=48.25  Aligned_cols=97  Identities=12%  Similarity=0.085  Sum_probs=63.6

Q ss_pred             hhHHHHHHHHhcCCChhHHHHHHHHHhhcCCCCcc----HHHHHHHHHHHHhcCcHHHHHHHHHHHhhCCC--CCCHHhH
Q 021791          155 ETYNCFFKEYRGRKDANGAMKLYRQMKEDDLCVPN----IHTYNILIGMFMALNRMDMVREIWNHVKGSEL--GLDLDSY  228 (307)
Q Consensus       155 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~  228 (307)
                      ..|...+....+.|++++|...|+.+.+..   |+    ...+..+..+|...|++++|...|+.+...-.  +.....+
T Consensus       144 ~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~y---P~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl  220 (263)
T PRK10803        144 TDYNAAIALVQDKSRQDDAIVAFQNFVKKY---PDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAM  220 (263)
T ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHHHC---cCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHH
Confidence            345555555556677888888887777763   33    24666777777778888888888877775411  1123445


Q ss_pred             HHHHHHHHccCcHHHHHHHHHHHHHc
Q 021791          229 TMLIHGLCEKQKWKEACQYFVEMIEK  254 (307)
Q Consensus       229 ~~li~~~~~~g~~~~a~~~~~~~~~~  254 (307)
                      -.+..++...|+.++|..+|+++++.
T Consensus       221 ~klg~~~~~~g~~~~A~~~~~~vi~~  246 (263)
T PRK10803        221 FKVGVIMQDKGDTAKAKAVYQQVIKK  246 (263)
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence            55566666778888888888877765

>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production

Probab=97.44  E-value=0.0015  Score=45.90  Aligned_cols=71  Identities=14%  Similarity=0.254  Sum_probs=44.3

Q ss_pred             HHHHHHHHHHhcCcHHHHHHHHHHHhhCCCCCCHHhHHHHHHHHHccCcHHHHHHHHHHHHHc-----CCCCcHhhH
Q 021791          192 TYNILIGMFMALNRMDMVREIWNHVKGSELGLDLDSYTMLIHGLCEKQKWKEACQYFVEMIEK-----GLLPQKVTF  263 (307)
Q Consensus       192 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~-----~~~p~~~~~  263 (307)
                      +...++..+...|+++.|..+.+.+.... +.+...|..+|.+|...|+..+|.++|+++.+.     |+.|++.+-
T Consensus        64 ~~~~l~~~~~~~~~~~~a~~~~~~~l~~d-P~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~~  139 (146)
T PF03704_consen   64 ALERLAEALLEAGDYEEALRLLQRALALD-PYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPETR  139 (146)
T ss_dssp             HHHHHHHHHHHTT-HHHHHHHHHHHHHHS-TT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHHH
T ss_pred             HHHHHHHHHHhccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHHH
Confidence            44556666677777777777777777664 336677777777777777777777777766432     777777653

It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.

>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase

Probab=97.43  E-value=0.0046  Score=41.96  Aligned_cols=50  Identities=12%  Similarity=-0.031  Sum_probs=35.5

Q ss_pred             CCCCCHHhHHHHHHHHHccCcHHHHHHHHHHHHHc-CCCCcHhhHHHHHHH
Q 021791          220 ELGLDLDSYTMLIHGLCEKQKWKEACQYFVEMIEK-GLLPQKVTFETLYRG  269 (307)
Q Consensus       220 ~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~-~~~p~~~~~~~l~~~  269 (307)
                      ...|+..+..+++.+|+..|++..|+++.+...+. +++.+..+|..|++=
T Consensus        47 pl~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~W   97 (126)
T PF12921_consen   47 PLYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLEW   97 (126)
T ss_pred             CCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Confidence            34567777777777777777777777777777655 666666677777653

The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].

>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A

Probab=97.40  E-value=0.031  Score=41.79  Aligned_cols=180  Identities=12%  Similarity=0.098  Sum_probs=89.4

Q ss_pred             HHHHHHHhcCchhhHHHHHHHHHhcCC--CCcHHHHHHHHHHHHhhCCCCcchhhHHHHHHHHHHHHHHHhcCCCCCHHH
Q 021791            9 SLIYGWCKINRIDMAERFLGEMIERGV--EPNVVTYNVLLNGVCRRASLHPNERFEKTIRNAEKVFDEMRVRGIEPDVTS   86 (307)
Q Consensus         9 ~li~~~~~~g~~~~a~~~~~~~~~~~~--~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~   86 (307)
                      .....+...|++.+|.+.|+.+...-.  +-.....-.+..++.+          .+++++|...+++..+.-..-....
T Consensus        10 ~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~----------~~~y~~A~~~~~~fi~~yP~~~~~~   79 (203)
T PF13525_consen   10 QKALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYK----------QGDYEEAIAAYERFIKLYPNSPKAD   79 (203)
T ss_dssp             HHHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHH----------TT-HHHHHHHHHHHHHH-TT-TTHH
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHH----------cCCHHHHHHHHHHHHHHCCCCcchh
Confidence            345566678888888888888876521  2223445556666777          7778888888888776521111112


Q ss_pred             HHHHHHHHHhcCCchhHHHHHHHHHHcCCC---CchhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHhhHHHHHHH
Q 021791           87 FSIVLHVYSRAHKPQLSLDKLNFMKEKGIC---PTVATYTSVVKCLCSCGRIEDAEELLGEMVRNGVSPSAETYNCFFKE  163 (307)
Q Consensus        87 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~---~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~  163 (307)
                      +...+.+.+.........     .......   --...+..++.-|-.+....+|...+..+...    =...--.+...
T Consensus        80 ~A~Y~~g~~~~~~~~~~~-----~~~~D~~~~~~A~~~~~~li~~yP~S~y~~~A~~~l~~l~~~----la~~e~~ia~~  150 (203)
T PF13525_consen   80 YALYMLGLSYYKQIPGIL-----RSDRDQTSTRKAIEEFEELIKRYPNSEYAEEAKKRLAELRNR----LAEHELYIARF  150 (203)
T ss_dssp             HHHHHHHHHHHHHHHHHH------TT---HHHHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHH----HHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHhCccch-----hcccChHHHHHHHHHHHHHHHHCcCchHHHHHHHHHHHHHHH----HHHHHHHHHHH
Confidence            222222222111111100     0000000   01123444555555555556665555554432    01111224566


Q ss_pred             HhcCCChhHHHHHHHHHhhcCCCCccH----HHHHHHHHHHHhcCcHHHHH
Q 021791          164 YRGRKDANGAMKLYRQMKEDDLCVPNI----HTYNILIGMFMALNRMDMVR  210 (307)
Q Consensus       164 ~~~~~~~~~a~~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~a~  210 (307)
                      |.+.|.+..|..-++.+.+.-   |++    .....++.++.+.|..+.+.
T Consensus       151 Y~~~~~y~aA~~r~~~v~~~y---p~t~~~~~al~~l~~~y~~l~~~~~a~  198 (203)
T PF13525_consen  151 YYKRGKYKAAIIRFQYVIENY---PDTPAAEEALARLAEAYYKLGLKQAAD  198 (203)
T ss_dssp             HHCTT-HHHHHHHHHHHHHHS---TTSHHHHHHHHHHHHHHHHTT-HHHHH
T ss_pred             HHHcccHHHHHHHHHHHHHHC---CCCchHHHHHHHHHHHHHHhCChHHHH
Confidence            777888888887777777762   332    34456667777777666443

>PRK10803 tol-pal system protein YbgF; Provisional

Probab=97.38  E-value=0.0054  Score=47.62  Aligned_cols=101  Identities=11%  Similarity=0.004  Sum_probs=76.2

Q ss_pred             HHHHHHHHHHHHhcCcHHHHHHHHHHHhhCCCCCC--HHhHHHHHHHHHccCcHHHHHHHHHHHHHcC--CCCcHhhHHH
Q 021791          190 IHTYNILIGMFMALNRMDMVREIWNHVKGSELGLD--LDSYTMLIHGLCEKQKWKEACQYFVEMIEKG--LLPQKVTFET  265 (307)
Q Consensus       190 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~--~~p~~~~~~~  265 (307)
                      ...|...+....+.|++++|...|+.+........  ...+-.+..+|...|++++|...|+.+.+.-  -......+..
T Consensus       143 ~~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~k  222 (263)
T PRK10803        143 NTDYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFK  222 (263)
T ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHH
Confidence            44566666555678999999999999998632211  3577788899999999999999999999751  1112344555


Q ss_pred             HHHHHhhchhHHHHHHHHHHhhhcC
Q 021791          266 LYRGLIQSDMLRTWRRLKKKLDEES  290 (307)
Q Consensus       266 l~~~~~~~g~~~~a~~~~~~~~~~~  290 (307)
                      +...+...|+.++|..+++++.+.-
T Consensus       223 lg~~~~~~g~~~~A~~~~~~vi~~y  247 (263)
T PRK10803        223 VGVIMQDKGDTAKAKAVYQQVIKKY  247 (263)
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHHC
Confidence            6677889999999999999887643

>PF13281 DUF4071: Domain of unknown function (DUF4071)

Probab=97.35  E-value=0.059  Score=43.83  Aligned_cols=167  Identities=14%  Similarity=0.117  Sum_probs=108.9

Q ss_pred             HHHHHHHHHHHhcCCchhHHHHHHHHHHcC---CCCchhhHHHHHHHHHh---cCChHHHHHHHHHHHhCCCCCCHhhHH
Q 021791           85 TSFSIVLHVYSRAHKPQLSLDKLNFMKEKG---ICPTVATYTSVVKCLCS---CGRIEDAEELLGEMVRNGVSPSAETYN  158 (307)
Q Consensus        85 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~~~~~ll~~~~~---~~~~~~a~~~~~~~~~~~~~~~~~~~~  158 (307)
                      .+...++-+|-...+++...++.+.+...-   +.-....-....-++.+   .|+.++|++++..+......+++.+|.
T Consensus       142 div~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~g  221 (374)
T PF13281_consen  142 DIVINLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLG  221 (374)
T ss_pred             hHHHHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHH
Confidence            344456667999999999999999998762   11123333345556667   899999999999977666677899998


Q ss_pred             HHHHHHhc---------CCChhHHHHHHHHHhhcCCCCccHHHHHHHHHHHHhcCc----HHHHHHHH---HH-HhhCC-
Q 021791          159 CFFKEYRG---------RKDANGAMKLYRQMKEDDLCVPNIHTYNILIGMFMALNR----MDMVREIW---NH-VKGSE-  220 (307)
Q Consensus       159 ~l~~~~~~---------~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~----~~~a~~~~---~~-~~~~~-  220 (307)
                      .+.+.|-.         ....++|...|.+.-+..   ||..+=-.++..+...|.    -.+..++-   .. ..++| 
T Consensus       222 L~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~~---~~~Y~GIN~AtLL~~~g~~~~~~~el~~i~~~l~~llg~kg~  298 (374)
T PF13281_consen  222 LLGRIYKDLFLESNFTDRESLDKAIEWYRKGFEIE---PDYYSGINAATLLMLAGHDFETSEELRKIGVKLSSLLGRKGS  298 (374)
T ss_pred             HHHHHHHHHHHHcCccchHHHHHHHHHHHHHHcCC---ccccchHHHHHHHHHcCCcccchHHHHHHHHHHHHHHHhhcc
Confidence            88877632         234677888888776653   443322222222222332    11222322   21 11222 


Q ss_pred             --CCCCHHhHHHHHHHHHccCcHHHHHHHHHHHHHc
Q 021791          221 --LGLDLDSYTMLIHGLCEKQKWKEACQYFVEMIEK  254 (307)
Q Consensus       221 --~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~  254 (307)
                        -..+...+..++.++.-.|++++|.+..++|...
T Consensus       299 ~~~~~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l  334 (374)
T PF13281_consen  299 LEKMQDYWDVATLLEASVLAGDYEKAIQAAEKAFKL  334 (374)
T ss_pred             ccccccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhc
Confidence              2245666788899999999999999999999865

>PRK15331 chaperone protein SicA; Provisional

Probab=97.29  E-value=0.031  Score=39.41  Aligned_cols=88  Identities=14%  Similarity=0.005  Sum_probs=63.4

Q ss_pred             HHhcCCChhHHHHHHHHHhhcCCCCccHHHHHHHHHHHHhcCcHHHHHHHHHHHhhCCCCCCHHhHHHHHHHHHccCcHH
Q 021791          163 EYRGRKDANGAMKLYRQMKEDDLCVPNIHTYNILIGMFMALNRMDMVREIWNHVKGSELGLDLDSYTMLIHGLCEKQKWK  242 (307)
Q Consensus       163 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~  242 (307)
                      -+...|++++|..+|.-+...+  +.+..-+..|..++-..+++++|...+...-..+.. |+..+-....++...|+.+
T Consensus        46 ~~y~~Gk~~eA~~~F~~L~~~d--~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~-dp~p~f~agqC~l~l~~~~  122 (165)
T PRK15331         46 EFYNQGRLDEAETFFRFLCIYD--FYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKN-DYRPVFFTGQCQLLMRKAA  122 (165)
T ss_pred             HHHHCCCHHHHHHHHHHHHHhC--cCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccC-CCCccchHHHHHHHhCCHH
Confidence            3456788888888888877765  455666677777777788888888887776655432 5555666777778888888


Q ss_pred             HHHHHHHHHHH
Q 021791          243 EACQYFVEMIE  253 (307)
Q Consensus       243 ~a~~~~~~~~~  253 (307)
                      .|...|...++
T Consensus       123 ~A~~~f~~a~~  133 (165)
T PRK15331        123 KARQCFELVNE  133 (165)
T ss_pred             HHHHHHHHHHh
Confidence            88888877766

>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase

Probab=97.27  E-value=0.0071  Score=41.03  Aligned_cols=49  Identities=6%  Similarity=0.019  Sum_probs=29.1

Q ss_pred             CccHHHHHHHHHHHHhcCcHHHHHHHHHHHhh-CCCCCCHHhHHHHHHHH
Q 021791          187 VPNIHTYNILIGMFMALNRMDMVREIWNHVKG-SELGLDLDSYTMLIHGL  235 (307)
Q Consensus       187 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-~~~~~~~~~~~~li~~~  235 (307)
                      .|+..+..+++.+|+..|++..|.++.+.+.+ .+++.+...|..|++-.
T Consensus        49 ~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~W~   98 (126)
T PF12921_consen   49 YPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLEWA   98 (126)
T ss_pred             CCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Confidence            56666666666666666666666666665543 24455555666666543

The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].

>PF13371 TPR_9: Tetratricopeptide repeat

Probab=97.21  E-value=0.004  Score=37.75  Aligned_cols=56  Identities=11%  Similarity=0.165  Sum_probs=32.6

Q ss_pred             HHHHhcCcHHHHHHHHHHHhhCCCCCCHHhHHHHHHHHHccCcHHHHHHHHHHHHHc
Q 021791          198 GMFMALNRMDMVREIWNHVKGSELGLDLDSYTMLIHGLCEKQKWKEACQYFVEMIEK  254 (307)
Q Consensus       198 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~  254 (307)
                      ..|.+.+++++|.++++.+...+.. +...+.....++...|++++|...|++..+.
T Consensus         3 ~~~~~~~~~~~A~~~~~~~l~~~p~-~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~   58 (73)
T PF13371_consen    3 QIYLQQEDYEEALEVLERALELDPD-DPELWLQRARCLFQLGRYEEALEDLERALEL   58 (73)
T ss_pred             HHHHhCCCHHHHHHHHHHHHHhCcc-cchhhHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence            3455566666666666666655322 4455555566666666666666666666644

>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H

Probab=97.15  E-value=0.0024  Score=39.32  Aligned_cols=60  Identities=18%  Similarity=0.205  Sum_probs=30.0

Q ss_pred             hHHHHHHHHHccCcHHHHHHHHHHHHHc----CC-CCc-HhhHHHHHHHHhhchhHHHHHHHHHHh
Q 021791          227 SYTMLIHGLCEKQKWKEACQYFVEMIEK----GL-LPQ-KVTFETLYRGLIQSDMLRTWRRLKKKL  286 (307)
Q Consensus       227 ~~~~li~~~~~~g~~~~a~~~~~~~~~~----~~-~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~  286 (307)
                      +++.+...|...|++++|+..|++.++.    |- .|+ ..++..+...+...|++++|.+++++.
T Consensus         7 ~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~a   72 (78)
T PF13424_consen    7 AYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKA   72 (78)
T ss_dssp             HHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            4455555555555555555555555432    10 111 234555555555666666666655553

...

>PF13371 TPR_9: Tetratricopeptide repeat

Probab=97.06  E-value=0.0061  Score=36.90  Aligned_cols=54  Identities=15%  Similarity=0.117  Sum_probs=25.5

Q ss_pred             HhcCCChhHHHHHHHHHhhcCCCCccHHHHHHHHHHHHhcCcHHHHHHHHHHHhhC
Q 021791          164 YRGRKDANGAMKLYRQMKEDDLCVPNIHTYNILIGMFMALNRMDMVREIWNHVKGS  219 (307)
Q Consensus       164 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~  219 (307)
                      |.+.+++++|.++++.+...+  +.+...+......+...|++++|.+.++...+.
T Consensus         5 ~~~~~~~~~A~~~~~~~l~~~--p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~   58 (73)
T PF13371_consen    5 YLQQEDYEEALEVLERALELD--PDDPELWLQRARCLFQLGRYEEALEDLERALEL   58 (73)
T ss_pred             HHhCCCHHHHHHHHHHHHHhC--cccchhhHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence            444444455555554444443  334444444444444555555555555444443

>PRK15331 chaperone protein SicA; Provisional

Probab=97.06  E-value=0.057  Score=38.15  Aligned_cols=87  Identities=11%  Similarity=0.071  Sum_probs=55.7

Q ss_pred             HHhcCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHhcCCChhHHHHHHHHHhhcCCCCccHHHHHHHHHHHHhcCcHHH
Q 021791          129 LCSCGRIEDAEELLGEMVRNGVSPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDDLCVPNIHTYNILIGMFMALNRMDM  208 (307)
Q Consensus       129 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  208 (307)
                      +...|++++|..+|.-+...++. +..-|..|..++-..+++++|...|......+  ..|+..+-.....+...|+.+.
T Consensus        47 ~y~~Gk~~eA~~~F~~L~~~d~~-n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~--~~dp~p~f~agqC~l~l~~~~~  123 (165)
T PRK15331         47 FYNQGRLDEAETFFRFLCIYDFY-NPDYTMGLAAVCQLKKQFQKACDLYAVAFTLL--KNDYRPVFFTGQCQLLMRKAAK  123 (165)
T ss_pred             HHHCCCHHHHHHHHHHHHHhCcC-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc--cCCCCccchHHHHHHHhCCHHH
Confidence            44567777777777766665443 55566666666667777777777776655543  2333444555666677777777


Q ss_pred             HHHHHHHHhh
Q 021791          209 VREIWNHVKG  218 (307)
Q Consensus       209 a~~~~~~~~~  218 (307)
                      |+..|.....
T Consensus       124 A~~~f~~a~~  133 (165)
T PRK15331        124 ARQCFELVNE  133 (165)
T ss_pred             HHHHHHHHHh
Confidence            7777776665

>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H

Probab=96.92  E-value=0.0054  Score=37.73  Aligned_cols=63  Identities=17%  Similarity=0.278  Sum_probs=37.9

Q ss_pred             HHHHHHHHHHHhcCcHHHHHHHHHHHhhC----CC-CCC-HHhHHHHHHHHHccCcHHHHHHHHHHHHH
Q 021791          191 HTYNILIGMFMALNRMDMVREIWNHVKGS----EL-GLD-LDSYTMLIHGLCEKQKWKEACQYFVEMIE  253 (307)
Q Consensus       191 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~-~~~-~~~~~~li~~~~~~g~~~~a~~~~~~~~~  253 (307)
                      .+++.+...|...|++++|+..+++....    |. .|+ ..++..+..+|...|++++|++.+++..+
T Consensus         6 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~   74 (78)
T PF13424_consen    6 NAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALD   74 (78)
T ss_dssp             HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence            45666666677777777777766665532    11 111 34566667777777777777777776543

...

>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional

Probab=96.83  E-value=0.027  Score=46.48  Aligned_cols=63  Identities=8%  Similarity=-0.034  Sum_probs=29.0

Q ss_pred             cHHHHHHHHHHHHhcCcHHHHHHHHHHHhhCCCCCCH----HhHHHHHHHHHccCcHHHHHHHHHHHHH
Q 021791          189 NIHTYNILIGMFMALNRMDMVREIWNHVKGSELGLDL----DSYTMLIHGLCEKQKWKEACQYFVEMIE  253 (307)
Q Consensus       189 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~li~~~~~~g~~~~a~~~~~~~~~  253 (307)
                      +...++.+..+|...|++++|...++...+.+  |+.    .+|..+..+|...|+.++|+..+++.++
T Consensus        74 ~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~--Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALe  140 (453)
T PLN03098         74 TAEDAVNLGLSLFSKGRVKDALAQFETALELN--PNPDEAQAAYYNKACCHAYREEGKKAADCLRTALR  140 (453)
T ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--CCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            34444444444444555555555554444432  221    1244444444555555555555554444

>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus

Probab=96.81  E-value=0.077  Score=35.80  Aligned_cols=66  Identities=11%  Similarity=0.033  Sum_probs=34.7

Q ss_pred             HHhHHHHHHHHHccCcHHHHHHHHHHHHHcCCCCcHhhHHHHHHHHhhchhHHHHHHHHHHhhhcCC
Q 021791          225 LDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDEESI  291 (307)
Q Consensus       225 ~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~  291 (307)
                      .......+..+..+|+-++..+++.++.+. -.+++.....+..+|.+.|+..++.+++++..+.|+
T Consensus        86 se~vD~ALd~lv~~~kkDqLdki~~~l~kn-~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG~  151 (161)
T PF09205_consen   86 SEYVDLALDILVKQGKKDQLDKIYNELKKN-EEINPEFLVKIANAYKKLGNTREANELLKEACEKGL  151 (161)
T ss_dssp             -HHHHHHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-
T ss_pred             HHHHHHHHHHHHHhccHHHHHHHHHHHhhc-cCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhch
Confidence            334455555666666666666666665542 245555566666666666666666666666666554

Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.

>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]

Probab=96.81  E-value=0.11  Score=37.49  Aligned_cols=133  Identities=9%  Similarity=0.062  Sum_probs=97.9

Q ss_pred             CCCHHHHHHHHHHHHhcCCchhHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCC-CCHhhHHH
Q 021791           81 EPDVTSFSIVLHVYSRAHKPQLSLDKLNFMKEKGICPTVATYTSVVKCLCSCGRIEDAEELLGEMVRNGVS-PSAETYNC  159 (307)
Q Consensus        81 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~  159 (307)
                      .|+...-..|..+....|+..+|...|++...--+.-|......+.++....+++..|...++.+.+.+.. -++++...
T Consensus        86 ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~Ll  165 (251)
T COG4700          86 APTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGHLL  165 (251)
T ss_pred             chhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCchHH
Confidence            56777777888889999999999999988876545557777788888888899999999999888775321 12345556


Q ss_pred             HHHHHhcCCChhHHHHHHHHHhhcCCCCccHHHHHHHHHHHHhcCcHHHHHHHHHHH
Q 021791          160 FFKEYRGRKDANGAMKLYRQMKEDDLCVPNIHTYNILIGMFMALNRMDMVREIWNHV  216 (307)
Q Consensus       160 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~  216 (307)
                      +.+.+...|.+..|..-|+.....   .|+...-......+.+.|+.+++..-+..+
T Consensus       166 ~aR~laa~g~~a~Aesafe~a~~~---ypg~~ar~~Y~e~La~qgr~~ea~aq~~~v  219 (251)
T COG4700         166 FARTLAAQGKYADAESAFEVAISY---YPGPQARIYYAEMLAKQGRLREANAQYVAV  219 (251)
T ss_pred             HHHHHHhcCCchhHHHHHHHHHHh---CCCHHHHHHHHHHHHHhcchhHHHHHHHHH
Confidence            778888889999999999888876   455555555555666778766665444433

>PF13170 DUF4003: Protein of unknown function (DUF4003)

Probab=96.81  E-value=0.18  Score=40.02  Aligned_cols=138  Identities=14%  Similarity=0.184  Sum_probs=88.7

Q ss_pred             hhhHHHHHHHHHhcCCCCcHHHHHHHHHHHHhhCCCCcchhhHHHHHHHHHHHHHHHhcC---CCCCHHHHHHHHHHHHh
Q 021791           20 IDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPNERFEKTIRNAEKVFDEMRVRG---IEPDVTSFSIVLHVYSR   96 (307)
Q Consensus        20 ~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~~~~~ll~~~~~   96 (307)
                      +++..++++.|.+.|.+-+..+|-+........    +.........++..+|+.|++..   -.++-.++..++..  .
T Consensus        78 ~~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~----~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~  151 (297)
T PF13170_consen   78 FKEVLDIYEKLKEAGFKRSEYLYLAALIILEEE----EKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDYPFAALLAM--T  151 (297)
T ss_pred             HHHHHHHHHHHHHhccCccChHHHHHHHHHHhc----ccccHHHHHHHHHHHHHHHHHhCccccCccchhHHHHHhc--c
Confidence            567788899999999998887776644333331    11112567889999999999874   23445566666544  3


Q ss_pred             cCCc----hhHHHHHHHHHHcCCCCchh--hHHHHHHHHHhcCC--hHHHHHHHHHHHhCCCCCCHhhHHHHHHH
Q 021791           97 AHKP----QLSLDKLNFMKEKGICPTVA--TYTSVVKCLCSCGR--IEDAEELLGEMVRNGVSPSAETYNCFFKE  163 (307)
Q Consensus        97 ~~~~----~~a~~~~~~~~~~~~~~~~~--~~~~ll~~~~~~~~--~~~a~~~~~~~~~~~~~~~~~~~~~l~~~  163 (307)
                      ..+.    +.+..+|+.+.+.|+..+..  ..+.++..+.....  ...+.++++.+.+.|+++....|..+.-.
T Consensus       152 ~~~~e~l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~~~kik~~~yp~lGlL  226 (297)
T PF13170_consen  152 SEDVEELAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKNGVKIKYMHYPTLGLL  226 (297)
T ss_pred             cccHHHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCccccccccHHHHH
Confidence            3333    56778888888877764332  33333333322222  34788889999999988887777655433

>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus

Probab=96.80  E-value=0.08  Score=35.74  Aligned_cols=137  Identities=11%  Similarity=0.191  Sum_probs=71.2

Q ss_pred             HHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCchhHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCChHHHHHH
Q 021791           62 EKTIRNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHKPQLSLDKLNFMKEKGICPTVATYTSVVKCLCSCGRIEDAEEL  141 (307)
Q Consensus        62 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~  141 (307)
                      .|.+++..++..+.....   +..-+|-++--....-+=+-..++++.+   |--.|...          +|+.......
T Consensus        15 dG~V~qGveii~k~v~Ss---ni~E~NWvICNiiDaa~C~yvv~~LdsI---GkiFDis~----------C~NlKrVi~C   78 (161)
T PF09205_consen   15 DGDVKQGVEIIEKTVNSS---NIKEYNWVICNIIDAADCDYVVETLDSI---GKIFDISK----------CGNLKRVIEC   78 (161)
T ss_dssp             TT-HHHHHHHHHHHHHHS----HHHHTHHHHHHHHH--HHHHHHHHHHH---GGGS-GGG-----------S-THHHHHH
T ss_pred             hchHHHHHHHHHHHcCcC---CccccceeeeecchhhchhHHHHHHHHH---hhhcCchh----------hcchHHHHHH
Confidence            456667777777666542   4444554444444333333334444333   32223222          2333333333


Q ss_pred             HHHHHhCCCCCCHhhHHHHHHHHhcCCChhHHHHHHHHHhhcCCCCccHHHHHHHHHHHHhcCcHHHHHHHHHHHhhCCC
Q 021791          142 LGEMVRNGVSPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDDLCVPNIHTYNILIGMFMALNRMDMVREIWNHVKGSEL  221 (307)
Q Consensus       142 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~  221 (307)
                      +-.+-     .+.......+......|..+...+++..+.+.+  .+++.....+..+|.+.|+..++.+++.+..+.|+
T Consensus        79 ~~~~n-----~~se~vD~ALd~lv~~~kkDqLdki~~~l~kn~--~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG~  151 (161)
T PF09205_consen   79 YAKRN-----KLSEYVDLALDILVKQGKKDQLDKIYNELKKNE--EINPEFLVKIANAYKKLGNTREANELLKEACEKGL  151 (161)
T ss_dssp             HHHTT--------HHHHHHHHHHHHTT-HHHHHHHHHHH-------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-
T ss_pred             HHHhc-----chHHHHHHHHHHHHHhccHHHHHHHHHHHhhcc--CCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhch
Confidence            32211     144455566777778888888888888887644  67777788888888888888888888888877764

Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.

>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=96.79  E-value=0.046  Score=44.16  Aligned_cols=124  Identities=15%  Similarity=0.123  Sum_probs=76.9

Q ss_pred             HHHHhcCChHHHHHHHHHHHhC-----CCC---------CCHhhHHHHHHHHhcCCChhHHHHHHHHHhhcCCCCccHHH
Q 021791          127 KCLCSCGRIEDAEELLGEMVRN-----GVS---------PSAETYNCFFKEYRGRKDANGAMKLYRQMKEDDLCVPNIHT  192 (307)
Q Consensus       127 ~~~~~~~~~~~a~~~~~~~~~~-----~~~---------~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~  192 (307)
                      +.|.+.|++..|..-|++....     +..         .-..+++.+..+|.+.+++..|+..-...+..+  ++|...
T Consensus       216 n~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~--~~N~KA  293 (397)
T KOG0543|consen  216 NVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLELD--PNNVKA  293 (397)
T ss_pred             hHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHhcC--CCchhH
Confidence            4577888888888887775542     111         122345566667777777777777777777766  677777


Q ss_pred             HHHHHHHHHhcCcHHHHHHHHHHHhhCCCCCCHHhHHHHHHHHHccCcH-HHHHHHHHHHHH
Q 021791          193 YNILIGMFMALNRMDMVREIWNHVKGSELGLDLDSYTMLIHGLCEKQKW-KEACQYFVEMIE  253 (307)
Q Consensus       193 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~-~~a~~~~~~~~~  253 (307)
                      .-.=.+++...|+++.|+..|+.+.+.... |...-+.++.+--+...+ +...++|..|..
T Consensus       294 LyRrG~A~l~~~e~~~A~~df~ka~k~~P~-Nka~~~el~~l~~k~~~~~~kekk~y~~mF~  354 (397)
T KOG0543|consen  294 LYRRGQALLALGEYDLARDDFQKALKLEPS-NKAARAELIKLKQKIREYEEKEKKMYANMFA  354 (397)
T ss_pred             HHHHHHHHHhhccHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            777777777777777777777777775322 333344444443333333 334566666654

>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans

Probab=96.77  E-value=0.21  Score=42.70  Aligned_cols=160  Identities=17%  Similarity=0.187  Sum_probs=106.7

Q ss_pred             HHHHHhcCChHHHHHHHHHHHhC-CCCCC-----HhhHHHHHHHHhc----CCChhHHHHHHHHHhhcCCCCccHHHHHH
Q 021791          126 VKCLCSCGRIEDAEELLGEMVRN-GVSPS-----AETYNCFFKEYRG----RKDANGAMKLYRQMKEDDLCVPNIHTYNI  195 (307)
Q Consensus       126 l~~~~~~~~~~~a~~~~~~~~~~-~~~~~-----~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~~  195 (307)
                      +...+=.|+-+.+++.+.+..+. ++.-.     .-.|...+..++.    ..+.+.+.+++..+...   .|+...|..
T Consensus       195 l~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~---yP~s~lfl~  271 (468)
T PF10300_consen  195 LSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKR---YPNSALFLF  271 (468)
T ss_pred             HhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHh---CCCcHHHHH
Confidence            33344568888999888887654 22211     1234444444433    45678899999999987   577666654


Q ss_pred             H-HHHHHhcCcHHHHHHHHHHHhhCCC---CCCHHhHHHHHHHHHccCcHHHHHHHHHHHHHcCCCCcHhhHHHHHHH-H
Q 021791          196 L-IGMFMALNRMDMVREIWNHVKGSEL---GLDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRG-L  270 (307)
Q Consensus       196 l-~~~~~~~~~~~~a~~~~~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~-~  270 (307)
                      . .+.+...|++++|.+.++.......   ......+-.+..++...++|++|...|..+.+.. .-+..+|..+..+ +
T Consensus       272 ~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s-~WSka~Y~Y~~a~c~  350 (468)
T PF10300_consen  272 FEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKES-KWSKAFYAYLAAACL  350 (468)
T ss_pred             HHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhcc-ccHHHHHHHHHHHHH
Confidence            3 4566778999999999997654211   1123345666777888999999999999999863 2344455555444 3


Q ss_pred             hhchhH-------HHHHHHHHHhhhc
Q 021791          271 IQSDML-------RTWRRLKKKLDEE  289 (307)
Q Consensus       271 ~~~g~~-------~~a~~~~~~~~~~  289 (307)
                      ...|+.       ++|.+++++....
T Consensus       351 ~~l~~~~~~~~~~~~a~~l~~~vp~l  376 (468)
T PF10300_consen  351 LMLGREEEAKEHKKEAEELFRKVPKL  376 (468)
T ss_pred             HhhccchhhhhhHHHHHHHHHHHHHH
Confidence            567777       8888888877544

In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.

>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]

Probab=96.76  E-value=0.051  Score=44.12  Aligned_cols=270  Identities=14%  Similarity=0.075  Sum_probs=154.9

Q ss_pred             HHHHhcCchhhHHHHHHHHHhcCCCCcHH----HHHHHHHHHHhhCCCCcchhhHHHHHHHHHHHHHH--Hhc--CCC-C
Q 021791           12 YGWCKINRIDMAERFLGEMIERGVEPNVV----TYNVLLNGVCRRASLHPNERFEKTIRNAEKVFDEM--RVR--GIE-P   82 (307)
Q Consensus        12 ~~~~~~g~~~~a~~~~~~~~~~~~~p~~~----~~~~ll~~~~~~~~~~~~~~~~~~~~~a~~~~~~~--~~~--~~~-~   82 (307)
                      .-+++.|+....+.+|+..++.|.. |..    .|..|-.+|.-          .+++++|++....=  ...  |-+ -
T Consensus        25 ERLck~gdcraGv~ff~aA~qvGTe-Dl~tLSAIYsQLGNAyfy----------L~DY~kAl~yH~hDltlar~lgdklG   93 (639)
T KOG1130|consen   25 ERLCKMGDCRAGVDFFKAALQVGTE-DLSTLSAIYSQLGNAYFY----------LKDYEKALKYHTHDLTLARLLGDKLG   93 (639)
T ss_pred             HHHHhccchhhhHHHHHHHHHhcch-HHHHHHHHHHHhcchhhh----------HhhHHHHHhhhhhhHHHHHHhcchhc
Confidence            3478899999999999999987643 333    34444555555          78888888764321  110  100 0


Q ss_pred             CHHHHHHHHHHHHhcCCchhHHHHH----HHHHHcCCC-CchhhHHHHHHHHHhcCC--------------------hHH
Q 021791           83 DVTSFSIVLHVYSRAHKPQLSLDKL----NFMKEKGIC-PTVATYTSVVKCLCSCGR--------------------IED  137 (307)
Q Consensus        83 ~~~~~~~ll~~~~~~~~~~~a~~~~----~~~~~~~~~-~~~~~~~~ll~~~~~~~~--------------------~~~  137 (307)
                      .......|...+--.|.+++|.-.-    .-..+.|-. .....+-.+.+.|...|+                    ++.
T Consensus        94 EAKssgNLGNtlKv~G~fdeA~~cc~rhLd~areLgDrv~e~RAlYNlgnvYhakGk~~g~~~pee~g~f~~ev~~al~~  173 (639)
T KOG1130|consen   94 EAKSSGNLGNTLKVKGAFDEALTCCFRHLDFARELGDRVLESRALYNLGNVYHAKGKCTGLEAPEEKGAFNAEVTSALEN  173 (639)
T ss_pred             cccccccccchhhhhcccchHHHHHHHHhHHHHHHhHHHhhhHHHhhhhhhhhhcccccCCCChhhcccccHHHHHHHHH
Confidence            1122233334444455555554322    112222211 123344445555554432                    223


Q ss_pred             HHHHHHHHH----hCCCC-CCHhhHHHHHHHHhcCCChhHHHHHHHHHhh----cCCCCccHHHHHHHHHHHHhcCcHHH
Q 021791          138 AEELLGEMV----RNGVS-PSAETYNCFFKEYRGRKDANGAMKLYRQMKE----DDLCVPNIHTYNILIGMFMALNRMDM  208 (307)
Q Consensus       138 a~~~~~~~~----~~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~----~~~~~~~~~~~~~l~~~~~~~~~~~~  208 (307)
                      |.+.|.+=.    +.|-. .-...|..|...|.-.|+++.|+...+.-..    -|.-......+..+..++.-.|+++.
T Consensus       174 Av~fy~eNL~l~~~lgDr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~  253 (639)
T KOG1130|consen  174 AVKFYMENLELSEKLGDRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFEL  253 (639)
T ss_pred             HHHHHHHHHHHHHHhhhHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHh
Confidence            344443221    11111 1123566666667777899888877654322    12112345677888999999999999


Q ss_pred             HHHHHHHHhh----CCCC-CCHHhHHHHHHHHHccCcHHHHHHHHHHHHHc-----CCCCcHhhHHHHHHHHhhchhHHH
Q 021791          209 VREIWNHVKG----SELG-LDLDSYTMLIHGLCEKQKWKEACQYFVEMIEK-----GLLPQKVTFETLYRGLIQSDMLRT  278 (307)
Q Consensus       209 a~~~~~~~~~----~~~~-~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~-----~~~p~~~~~~~l~~~~~~~g~~~~  278 (307)
                      |.+.++....    .|-+ ....+.-++...|.-..++++|+.++.+-+.-     ...-....+.+|..++...|..++
T Consensus       254 A~ehYK~tl~LAielg~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~k  333 (639)
T KOG1130|consen  254 AIEHYKLTLNLAIELGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRK  333 (639)
T ss_pred             HHHHHHHHHHHHHHhcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHH
Confidence            9988876442    2211 12334556777777778889999988765432     122345678889999999999999


Q ss_pred             HHHHHHHhhhcCCC
Q 021791          279 WRRLKKKLDEESIT  292 (307)
Q Consensus       279 a~~~~~~~~~~~~~  292 (307)
                      |..+.+.-.+....
T Consensus       334 Al~fae~hl~~s~e  347 (639)
T KOG1130|consen  334 ALYFAELHLRSSLE  347 (639)
T ss_pred             HHHHHHHHHHHHHH
Confidence            98887765544433

>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]

Probab=96.73  E-value=0.34  Score=42.01  Aligned_cols=222  Identities=13%  Similarity=0.103  Sum_probs=126.8

Q ss_pred             HHHHHHHHHHHhcCch--hhHHHHHHHHHhcCCCCcHHHHHHHHHHHHhhCCCCcchhhHHHHHHHHHHHHHHHhcCC--
Q 021791            5 KMYTSLIYGWCKINRI--DMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPNERFEKTIRNAEKVFDEMRVRGI--   80 (307)
Q Consensus         5 ~~~~~li~~~~~~g~~--~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~--   80 (307)
                      ..++..=.+|.+-++.  -+...-+++++++|-.|+......   .++-          .|++.+|.++|.+--..+-  
T Consensus       599 L~f~~ARkAY~rVRdl~~L~li~EL~~~k~rge~P~~iLlA~---~~Ay----------~gKF~EAAklFk~~G~enRAl  665 (1081)
T KOG1538|consen  599 LDFETARKAYIRVRDLRYLELISELEERKKRGETPNDLLLAD---VFAY----------QGKFHEAAKLFKRSGHENRAL  665 (1081)
T ss_pred             hhhHHHHHHHHHHhccHHHHHHHHHHHHHhcCCCchHHHHHH---HHHh----------hhhHHHHHHHHHHcCchhhHH
Confidence            3455555666666553  334444566777787788765443   3444          6778888888865322110  


Q ss_pred             --CCCHHHHHHHHHHHHhcCCchhHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCChHHHHHHHH------HHHhCCCC-
Q 021791           81 --EPDVTSFSIVLHVYSRAHKPQLSLDKLNFMKEKGICPTVATYTSVVKCLCSCGRIEDAEELLG------EMVRNGVS-  151 (307)
Q Consensus        81 --~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~------~~~~~~~~-  151 (307)
                        -.|...| -+.+-+...|+.++-..+.++-.+=  ..+..--.+-...+...|+.++|..+.-      -+.+.+.+ 
T Consensus       666 EmyTDlRMF-D~aQE~~~~g~~~eKKmL~RKRA~W--Ar~~kePkaAAEmLiSaGe~~KAi~i~~d~gW~d~lidI~rkl  742 (1081)
T KOG1538|consen  666 EMYTDLRMF-DYAQEFLGSGDPKEKKMLIRKRADW--ARNIKEPKAAAEMLISAGEHVKAIEICGDHGWVDMLIDIARKL  742 (1081)
T ss_pred             HHHHHHHHH-HHHHHHhhcCChHHHHHHHHHHHHH--hhhcCCcHHHHHHhhcccchhhhhhhhhcccHHHHHHHHHhhc
Confidence              0011111 1233444555555444433321110  0011111223345556677777655431      11222222 


Q ss_pred             --CCHhhHHHHHHHHhcCCChhHHHHHHHHHhhcCCCCccHHHHHHHHHHHHhcCcHHHHHHHHHHHhhCCCCCCHH---
Q 021791          152 --PSAETYNCFFKEYRGRKDANGAMKLYRQMKEDDLCVPNIHTYNILIGMFMALNRMDMVREIWNHVKGSELGLDLD---  226 (307)
Q Consensus       152 --~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~---  226 (307)
                        .+..+...+...+.+...+.-|-++|..|-..          ..+++.....++|++|..+-+...+.  .||+.   
T Consensus       743 d~~ere~l~~~a~ylk~l~~~gLAaeIF~k~gD~----------ksiVqlHve~~~W~eAFalAe~hPe~--~~dVy~py  810 (1081)
T KOG1538|consen  743 DKAEREPLLLCATYLKKLDSPGLAAEIFLKMGDL----------KSLVQLHVETQRWDEAFALAEKHPEF--KDDVYMPY  810 (1081)
T ss_pred             chhhhhHHHHHHHHHhhccccchHHHHHHHhccH----------HHHhhheeecccchHhHhhhhhCccc--cccccchH
Confidence              24455666666667778888899999888643          35677888899999999998877654  33332   


Q ss_pred             --------hHHHHHHHHHccCcHHHHHHHHHHHHHc
Q 021791          227 --------SYTMLIHGLCEKQKWKEACQYFVEMIEK  254 (307)
Q Consensus       227 --------~~~~li~~~~~~g~~~~a~~~~~~~~~~  254 (307)
                              -|...-.+|.+.|+..+|..+++++.+.
T Consensus       811 aqwLAE~DrFeEAqkAfhkAGr~~EA~~vLeQLtnn  846 (1081)
T KOG1538|consen  811 AQWLAENDRFEEAQKAFHKAGRQREAVQVLEQLTNN  846 (1081)
T ss_pred             HHHhhhhhhHHHHHHHHHHhcchHHHHHHHHHhhhh
Confidence                    2444557788999999999999998665

>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]

Probab=96.70  E-value=0.028  Score=43.16  Aligned_cols=109  Identities=22%  Similarity=0.320  Sum_probs=74.1

Q ss_pred             cHHHHHHHHHHHHhc-----CchhhHHHHHHHHHhcCCCCcHHHHHHHHHHHHhhCCCCcchhh-------HHHHHHHHH
Q 021791            3 NVKMYTSLIYGWCKI-----NRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPNERF-------EKTIRNAEK   70 (307)
Q Consensus         3 ~~~~~~~li~~~~~~-----g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~~-------~~~~~~a~~   70 (307)
                      |-.+|-+.+..+...     +.++-....+..|.+.|+..|..+|+.||..+-+ |.+.+...+       -.+-+-+++
T Consensus        66 dK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPK-gkfiP~nvfQ~~F~HYP~QQ~C~I~  144 (406)
T KOG3941|consen   66 DKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPK-GKFIPQNVFQKVFLHYPQQQNCAIK  144 (406)
T ss_pred             cHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcc-cccccHHHHHHHHhhCchhhhHHHH
Confidence            445666677666543     5566667777888889999999999999987765 333222111       233456788


Q ss_pred             HHHHHHhcCCCCCHHHHHHHHHHHHhcCCc-hhHHHHHHHHHH
Q 021791           71 VFDEMRVRGIEPDVTSFSIVLHVYSRAHKP-QLSLDKLNFMKE  112 (307)
Q Consensus        71 ~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~-~~a~~~~~~~~~  112 (307)
                      ++++|...|+.||-.+-..|+.++.+.+-+ .+..++.-.|.+
T Consensus       145 vLeqME~hGVmPdkE~e~~lvn~FGr~~~p~~K~~Rm~yWmPk  187 (406)
T KOG3941|consen  145 VLEQMEWHGVMPDKEIEDILVNAFGRWNFPTKKVKRMLYWMPK  187 (406)
T ss_pred             HHHHHHHcCCCCchHHHHHHHHHhccccccHHHHHHHHHhhhh
Confidence            888888888888888888888888877654 334444444543

>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=96.68  E-value=0.17  Score=42.65  Aligned_cols=155  Identities=10%  Similarity=0.060  Sum_probs=85.4

Q ss_pred             HHhcCCchhHHHHHH--HHHHcCCCCchhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHhcCCChh
Q 021791           94 YSRAHKPQLSLDKLN--FMKEKGICPTVATYTSVVKCLCSCGRIEDAEELLGEMVRNGVSPSAETYNCFFKEYRGRKDAN  171 (307)
Q Consensus        94 ~~~~~~~~~a~~~~~--~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~  171 (307)
                      ..-.++++.+.++.+  .+.. .+  +..-.+.++..+-+.|.++.|+++...-.         +   -.....+.|+++
T Consensus       271 av~~~d~~~v~~~i~~~~ll~-~i--~~~~~~~i~~fL~~~G~~e~AL~~~~D~~---------~---rFeLAl~lg~L~  335 (443)
T PF04053_consen  271 AVLRGDFEEVLRMIAASNLLP-NI--PKDQGQSIARFLEKKGYPELALQFVTDPD---------H---RFELALQLGNLD  335 (443)
T ss_dssp             HHHTT-HHH-----HHHHTGG-G----HHHHHHHHHHHHHTT-HHHHHHHSS-HH---------H---HHHHHHHCT-HH
T ss_pred             HHHcCChhhhhhhhhhhhhcc-cC--ChhHHHHHHHHHHHCCCHHHHHhhcCChH---------H---HhHHHHhcCCHH
Confidence            344566666655553  1111 11  23346677777777777777776643321         1   123345667777


Q ss_pred             HHHHHHHHHhhcCCCCccHHHHHHHHHHHHhcCcHHHHHHHHHHHhhCCCCCCHHhHHHHHHHHHccCcHHHHHHHHHHH
Q 021791          172 GAMKLYRQMKEDDLCVPNIHTYNILIGMFMALNRMDMVREIWNHVKGSELGLDLDSYTMLIHGLCEKQKWKEACQYFVEM  251 (307)
Q Consensus       172 ~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~  251 (307)
                      .|.++.++.       ++...|..|.....+.|+++.|++.+.+...         |..++-.|...|+.+...++.+..
T Consensus       336 ~A~~~a~~~-------~~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d---------~~~L~lLy~~~g~~~~L~kl~~~a  399 (443)
T PF04053_consen  336 IALEIAKEL-------DDPEKWKQLGDEALRQGNIELAEECYQKAKD---------FSGLLLLYSSTGDREKLSKLAKIA  399 (443)
T ss_dssp             HHHHHCCCC-------STHHHHHHHHHHHHHTTBHHHHHHHHHHCT----------HHHHHHHHHHCT-HHHHHHHHHHH
T ss_pred             HHHHHHHhc-------CcHHHHHHHHHHHHHcCCHHHHHHHHHhhcC---------ccccHHHHHHhCCHHHHHHHHHHH
Confidence            776655432       3556778888888888888888877776653         355666666777777766666666


Q ss_pred             HHcCCCCcHhhHHHHHHHHhhchhHHHHHHHHHH
Q 021791          252 IEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKK  285 (307)
Q Consensus       252 ~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~  285 (307)
                      ...|-      ++....++.-.|+.++..+++.+
T Consensus       400 ~~~~~------~n~af~~~~~lgd~~~cv~lL~~  427 (443)
T PF04053_consen  400 EERGD------INIAFQAALLLGDVEECVDLLIE  427 (443)
T ss_dssp             HHTT-------HHHHHHHHHHHT-HHHHHHHHHH
T ss_pred             HHccC------HHHHHHHHHHcCCHHHHHHHHHH
Confidence            65542      44445555566666666666554

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.

>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]

Probab=96.62  E-value=0.047  Score=42.01  Aligned_cols=107  Identities=12%  Similarity=0.208  Sum_probs=78.5

Q ss_pred             CCcHHHHHHHHHHHHhhCCCCcchhhHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhc----------------CC
Q 021791           36 EPNVVTYNVLLNGVCRRASLHPNERFEKTIRNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRA----------------HK   99 (307)
Q Consensus        36 ~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~----------------~~   99 (307)
                      +-|..+|...+..+.... +..    .+.++-....++.|.+-|+.-|..+|+.|+..+-+-                .+
T Consensus        64 ~RdK~sfl~~V~~F~E~s-Vr~----R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ~~F~HYP~Q  138 (406)
T KOG3941|consen   64 KRDKDSFLAAVATFKEKS-VRG----RTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQKVFLHYPQQ  138 (406)
T ss_pred             cccHHHHHHHHHHHHHhh-hcc----cchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHHHHHHhhCchh
Confidence            446677777776665521 111    455666777788899999999999999999876432                23


Q ss_pred             chhHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCCh-HHHHHHHHHHHh
Q 021791          100 PQLSLDKLNFMKEKGICPTVATYTSVVKCLCSCGRI-EDAEELLGEMVR  147 (307)
Q Consensus       100 ~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~-~~a~~~~~~~~~  147 (307)
                      .+-+++++++|...|+.||..+-..+++++.+.+.. .+..++.-.|.+
T Consensus       139 Q~C~I~vLeqME~hGVmPdkE~e~~lvn~FGr~~~p~~K~~Rm~yWmPk  187 (406)
T KOG3941|consen  139 QNCAIKVLEQMEWHGVMPDKEIEDILVNAFGRWNFPTKKVKRMLYWMPK  187 (406)
T ss_pred             hhHHHHHHHHHHHcCCCCchHHHHHHHHHhccccccHHHHHHHHHhhhh
Confidence            345889999999999999999999999999988754 345555555543

>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length

Probab=96.46  E-value=0.41  Score=39.67  Aligned_cols=122  Identities=11%  Similarity=0.127  Sum_probs=81.9

Q ss_pred             HhcCCC-hhHHHHHHHHHhhcCCCCccHHHHHHHH----HHHH---hcCcHHHHHHHHHHHhhCCCCCCH----HhHHHH
Q 021791          164 YRGRKD-ANGAMKLYRQMKEDDLCVPNIHTYNILI----GMFM---ALNRMDMVREIWNHVKGSELGLDL----DSYTML  231 (307)
Q Consensus       164 ~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~~l~----~~~~---~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~l  231 (307)
                      +.+.|. -++|+++++.+.+-.  +-|...-+.+.    .+|.   ....+..-.++-+-+.+.|+.|-.    ..-|.+
T Consensus       389 lW~~g~~dekalnLLk~il~ft--~yD~ec~n~v~~fvKq~Y~qaLs~~~~~rLlkLe~fi~e~gl~~i~i~e~eian~L  466 (549)
T PF07079_consen  389 LWEIGQCDEKALNLLKLILQFT--NYDIECENIVFLFVKQAYKQALSMHAIPRLLKLEDFITEVGLTPITISEEEIANFL  466 (549)
T ss_pred             HHhcCCccHHHHHHHHHHHHhc--cccHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCCcccccHHHHHHHH
Confidence            344454 778888888887764  33443333322    2222   223455556666667777777633    334444


Q ss_pred             HH--HHHccCcHHHHHHHHHHHHHcCCCCcHhhHHHHHHHHhhchhHHHHHHHHHHhhhc
Q 021791          232 IH--GLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDEE  289 (307)
Q Consensus       232 i~--~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~  289 (307)
                      .+  -+..+|++.++.-.-.-+.  .+.|++.+|..+.-++....++++|..++..+..+
T Consensus       467 aDAEyLysqgey~kc~~ys~WL~--~iaPS~~~~RLlGl~l~e~k~Y~eA~~~l~~LP~n  524 (549)
T PF07079_consen  467 ADAEYLYSQGEYHKCYLYSSWLT--KIAPSPQAYRLLGLCLMENKRYQEAWEYLQKLPPN  524 (549)
T ss_pred             HHHHHHHhcccHHHHHHHHHHHH--HhCCcHHHHHHHHHHHHHHhhHHHHHHHHHhCCCc
Confidence            43  3467899999887766665  37899999999999999999999999999987653

Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.

>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex

Probab=96.45  E-value=0.36  Score=38.86  Aligned_cols=128  Identities=13%  Similarity=0.094  Sum_probs=95.7

Q ss_pred             hhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHhcCCChhHHHHHHHHHhhcCCCCccHHHHHHHHH
Q 021791          119 VATYTSVVKCLCSCGRIEDAEELLGEMVRNGVSPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDDLCVPNIHTYNILIG  198 (307)
Q Consensus       119 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~  198 (307)
                      ..+.+..+..+...|+...|..+-.+..    -|+...|..-+.+++..++|++...+...    .   -++.-|..++.
T Consensus       177 ~~Sl~~Ti~~li~~~~~k~A~kl~k~Fk----v~dkrfw~lki~aLa~~~~w~eL~~fa~s----k---KsPIGyepFv~  245 (319)
T PF04840_consen  177 GLSLNDTIRKLIEMGQEKQAEKLKKEFK----VPDKRFWWLKIKALAENKDWDELEKFAKS----K---KSPIGYEPFVE  245 (319)
T ss_pred             cCCHHHHHHHHHHCCCHHHHHHHHHHcC----CcHHHHHHHHHHHHHhcCCHHHHHHHHhC----C---CCCCChHHHHH
Confidence            3456667778888999999988877663    36999999999999999999988876432    1   23477889999


Q ss_pred             HHHhcCcHHHHHHHHHHHhhCCCCCCHHhHHHHHHHHHccCcHHHHHHHHHHHHHcCCCCcHhhHHHHHHHHhhc
Q 021791          199 MFMALNRMDMVREIWNHVKGSELGLDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQS  273 (307)
Q Consensus       199 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~  273 (307)
                      +|.+.|+..+|..+...+.          +..-+..|.+.|++.+|.+.-.+..      |...+..+...+...
T Consensus       246 ~~~~~~~~~eA~~yI~k~~----------~~~rv~~y~~~~~~~~A~~~A~~~k------d~~~L~~i~~~~~~~  304 (319)
T PF04840_consen  246 ACLKYGNKKEASKYIPKIP----------DEERVEMYLKCGDYKEAAQEAFKEK------DIDLLKQILKRCPGN  304 (319)
T ss_pred             HHHHCCCHHHHHHHHHhCC----------hHHHHHHHHHCCCHHHHHHHHHHcC------CHHHHHHHHHHCCCC
Confidence            9999999999999887722          2556788899999999988765542      444555555544433

Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm

>COG3898 Uncharacterized membrane-bound protein [Function unknown]

Probab=96.34  E-value=0.44  Score=38.74  Aligned_cols=215  Identities=11%  Similarity=0.044  Sum_probs=111.3

Q ss_pred             HHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCchhHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCChHHHHHH
Q 021791           62 EKTIRNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHKPQLSLDKLNFMKEKGICPTVATYTSVVKCLCSCGRIEDAEEL  141 (307)
Q Consensus        62 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~  141 (307)
                      .|+++.|.+-|+.|.... ..-..-...|.-..-+.|+.+.|.++-+..-..... -...+...+...+..|+++.|+++
T Consensus       133 eG~~~~Ar~kfeAMl~dP-EtRllGLRgLyleAqr~GareaAr~yAe~Aa~~Ap~-l~WA~~AtLe~r~~~gdWd~AlkL  210 (531)
T COG3898         133 EGDYEDARKKFEAMLDDP-ETRLLGLRGLYLEAQRLGAREAARHYAERAAEKAPQ-LPWAARATLEARCAAGDWDGALKL  210 (531)
T ss_pred             cCchHHHHHHHHHHhcCh-HHHHHhHHHHHHHHHhcccHHHHHHHHHHHHhhccC-CchHHHHHHHHHHhcCChHHHHHH
Confidence            567777777777776431 001111223333334566666666666555544322 345566666666777777777766


Q ss_pred             HHHHHhCC-C--------------------------------------CCCHh-hHHHHHHHHhcCCChhHHHHHHHHHh
Q 021791          142 LGEMVRNG-V--------------------------------------SPSAE-TYNCFFKEYRGRKDANGAMKLYRQMK  181 (307)
Q Consensus       142 ~~~~~~~~-~--------------------------------------~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~  181 (307)
                      ++.-.... +                                      .||.. .--.-..++.+.|+..++-.+++.+-
T Consensus       211 vd~~~~~~vie~~~aeR~rAvLLtAkA~s~ldadp~~Ar~~A~~a~KL~pdlvPaav~AAralf~d~~~rKg~~ilE~aW  290 (531)
T COG3898         211 VDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDADPASARDDALEANKLAPDLVPAAVVAARALFRDGNLRKGSKILETAW  290 (531)
T ss_pred             HHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCccchHHHHHHHHHHhccchhhhhhHHHHHH
Confidence            66543321 1                                      12211 11122344566666666666666666


Q ss_pred             hcCCCCccHHHHHHHHHHHHhcCcHHHHHHHHHHHhhC-CCCC-CHHhHHHHHHHHHccCcHHHHHHHHHHHHHcCCCCc
Q 021791          182 EDDLCVPNIHTYNILIGMFMALNRMDMVREIWNHVKGS-ELGL-DLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQ  259 (307)
Q Consensus       182 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~  259 (307)
                      +..   |.+..+...  .+.+.|+...  .-+++.... .++| +..+-..+.++-...|++..|..--+....  ..|.
T Consensus       291 K~e---PHP~ia~lY--~~ar~gdta~--dRlkRa~~L~slk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r--~~pr  361 (531)
T COG3898         291 KAE---PHPDIALLY--VRARSGDTAL--DRLKRAKKLESLKPNNAESSLAVAEAALDAGEFSAARAKAEAAAR--EAPR  361 (531)
T ss_pred             hcC---CChHHHHHH--HHhcCCCcHH--HHHHHHHHHHhcCccchHHHHHHHHHHHhccchHHHHHHHHHHhh--hCch
Confidence            552   333322221  2223443222  111111110 0112 444555566666677777777666665553  4677


Q ss_pred             HhhHHHHHHHH-hhchhHHHHHHHHHHhh
Q 021791          260 KVTFETLYRGL-IQSDMLRTWRRLKKKLD  287 (307)
Q Consensus       260 ~~~~~~l~~~~-~~~g~~~~a~~~~~~~~  287 (307)
                      ...|..|.+.- ...|+-.++++.+.+-.
T Consensus       362 es~~lLlAdIeeAetGDqg~vR~wlAqav  390 (531)
T COG3898         362 ESAYLLLADIEEAETGDQGKVRQWLAQAV  390 (531)
T ss_pred             hhHHHHHHHHHhhccCchHHHHHHHHHHh
Confidence            77777777654 34588888888776654

>smart00299 CLH Clathrin heavy chain repeat homology

Probab=96.33  E-value=0.2  Score=34.79  Aligned_cols=84  Identities=13%  Similarity=0.062  Sum_probs=42.3

Q ss_pred             HHHHHHHhcCCchhHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHhcCC
Q 021791           89 IVLHVYSRAHKPQLSLDKLNFMKEKGICPTVATYTSVVKCLCSCGRIEDAEELLGEMVRNGVSPSAETYNCFFKEYRGRK  168 (307)
Q Consensus        89 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~  168 (307)
                      .++..+...+.+.....+++.+...+. .+...++.++..|++.+ .++..+.++.      ..+......+++.|.+.+
T Consensus        12 ~vv~~~~~~~~~~~l~~yLe~~~~~~~-~~~~~~~~li~ly~~~~-~~~ll~~l~~------~~~~yd~~~~~~~c~~~~   83 (140)
T smart00299       12 EVVELFEKRNLLEELIPYLESALKLNS-ENPALQTKLIELYAKYD-PQKEIERLDN------KSNHYDIEKVGKLCEKAK   83 (140)
T ss_pred             HHHHHHHhCCcHHHHHHHHHHHHccCc-cchhHHHHHHHHHHHHC-HHHHHHHHHh------ccccCCHHHHHHHHHHcC
Confidence            445555555566666666666655543 35556666666666543 2222233221      112233334555555555


Q ss_pred             ChhHHHHHHHHH
Q 021791          169 DANGAMKLYRQM  180 (307)
Q Consensus       169 ~~~~a~~~~~~~  180 (307)
                      .++++.-++..+
T Consensus        84 l~~~~~~l~~k~   95 (140)
T smart00299       84 LYEEAVELYKKD   95 (140)
T ss_pred             cHHHHHHHHHhh
Confidence            555555555544

>PF13512 TPR_18: Tetratricopeptide repeat

Probab=96.23  E-value=0.22  Score=34.38  Aligned_cols=77  Identities=8%  Similarity=0.029  Sum_probs=52.3

Q ss_pred             HHHHHHhcCCchhHHHHHHHHHHcC--CCCchhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHhc
Q 021791           90 VLHVYSRAHKPQLSLDKLNFMKEKG--ICPTVATYTSVVKCLCSCGRIEDAEELLGEMVRNGVSPSAETYNCFFKEYRG  166 (307)
Q Consensus        90 ll~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~  166 (307)
                      -.....+.|++++|.+.|+.+...-  .+-...+--.++.+|.+.+++++|...+++.++..+.-....|...+.+++.
T Consensus        16 ~a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y~~gL~~   94 (142)
T PF13512_consen   16 EAQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYYMRGLSY   94 (142)
T ss_pred             HHHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHHHHHHHH
Confidence            3344557888999999998887762  1224455667888888999999999999888886544333445555555433

>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans

Probab=96.22  E-value=0.49  Score=40.46  Aligned_cols=167  Identities=14%  Similarity=0.118  Sum_probs=101.5

Q ss_pred             HHHHHHHHHhcCchhhHHHHHHHHHhc-CCCCc-----HHHHHHHHHHHHhhCCCCcchhhHHHHHHHHHHHHHHHhcCC
Q 021791            7 YTSLIYGWCKINRIDMAERFLGEMIER-GVEPN-----VVTYNVLLNGVCRRASLHPNERFEKTIRNAEKVFDEMRVRGI   80 (307)
Q Consensus         7 ~~~li~~~~~~g~~~~a~~~~~~~~~~-~~~p~-----~~~~~~ll~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~   80 (307)
                      ...++....=.|+=+.+++.+.+..+. ++.-.     .-.|...+..++...   .   .....+.+.++++.+.+.  
T Consensus       191 ~~kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~---~---~~~~~~~a~~lL~~~~~~--  262 (468)
T PF10300_consen  191 VLKLLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGID---G---EDVPLEEAEELLEEMLKR--  262 (468)
T ss_pred             HHHHHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCc---c---cCCCHHHHHHHHHHHHHh--
Confidence            344566666678888888888876554 22211     122333333333320   0   145667888888888876  


Q ss_pred             CCCHHHHHH-HHHHHHhcCCchhHHHHHHHHHHcC---CCCchhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHhh
Q 021791           81 EPDVTSFSI-VLHVYSRAHKPQLSLDKLNFMKEKG---ICPTVATYTSVVKCLCSCGRIEDAEELLGEMVRNGVSPSAET  156 (307)
Q Consensus        81 ~~~~~~~~~-ll~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~  156 (307)
                      -|+...|.. -.+.+...|++++|++.|+......   .+.....+--+..++.-..++++|...|..+.+.+-- +..+
T Consensus       263 yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s~W-Ska~  341 (468)
T PF10300_consen  263 YPNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKESKW-SKAF  341 (468)
T ss_pred             CCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhcccc-HHHH
Confidence            556655543 3455667889999999998755321   1123344555666777888899998888888875322 4444


Q ss_pred             HHHHHHH-HhcCCCh-------hHHHHHHHHHhh
Q 021791          157 YNCFFKE-YRGRKDA-------NGAMKLYRQMKE  182 (307)
Q Consensus       157 ~~~l~~~-~~~~~~~-------~~a~~~~~~~~~  182 (307)
                      |.-+..+ +...++.       ++|..+|.+...
T Consensus       342 Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp~  375 (468)
T PF10300_consen  342 YAYLAAACLLMLGREEEAKEHKKEAEELFRKVPK  375 (468)
T ss_pred             HHHHHHHHHHhhccchhhhhhHHHHHHHHHHHHH
Confidence            5444333 4455666       777777776643

In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.

>KOG2610 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.22  E-value=0.3  Score=38.82  Aligned_cols=154  Identities=8%  Similarity=-0.031  Sum_probs=91.9

Q ss_pred             HhcCCchhHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHhhHH----HHHHHHhcCCCh
Q 021791           95 SRAHKPQLSLDKLNFMKEKGICPTVATYTSVVKCLCSCGRIEDAEELLGEMVRNGVSPSAETYN----CFFKEYRGRKDA  170 (307)
Q Consensus        95 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~----~l~~~~~~~~~~  170 (307)
                      ...|+..+|-..++++.+. .+.|...+...=.+|.-.|+.+.-...++++... ..++...|.    ...-++...|-+
T Consensus       114 ~~~g~~h~a~~~wdklL~d-~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~-wn~dlp~~sYv~GmyaFgL~E~g~y  191 (491)
T KOG2610|consen  114 WGRGKHHEAAIEWDKLLDD-YPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPK-WNADLPCYSYVHGMYAFGLEECGIY  191 (491)
T ss_pred             hccccccHHHHHHHHHHHh-CchhhhhhhhhhhHHHhccchhhhhhHHHHhccc-cCCCCcHHHHHHHHHHhhHHHhccc
Confidence            3456666776777777665 3446666777777777777777777777776643 122332222    222334567777


Q ss_pred             hHHHHHHHHHhhcCCCCccHHHHHHHHHHHHhcCcHHHHHHHHHHHhhC---CCCCCHHhHHHHHHHHHccCcHHHHHHH
Q 021791          171 NGAMKLYRQMKEDDLCVPNIHTYNILIGMFMALNRMDMVREIWNHVKGS---ELGLDLDSYTMLIHGLCEKQKWKEACQY  247 (307)
Q Consensus       171 ~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~~~~~li~~~~~~g~~~~a~~~  247 (307)
                      ++|.+.-++..+.+  +.|.-.-.++...+--.|+..++.++..+-...   +.-.-...|-...-.+...+.++.|+++
T Consensus       192 ~dAEk~A~ralqiN--~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~aleI  269 (491)
T KOG2610|consen  192 DDAEKQADRALQIN--RFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALEI  269 (491)
T ss_pred             hhHHHHHHhhccCC--CcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHHH
Confidence            77777777777665  556666666666666777777777766544321   1001112233444445566777778877


Q ss_pred             HHHHH
Q 021791          248 FVEMI  252 (307)
Q Consensus       248 ~~~~~  252 (307)
                      |++-+
T Consensus       270 yD~ei  274 (491)
T KOG2610|consen  270 YDREI  274 (491)
T ss_pred             HHHHH
Confidence            76544

>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1

Probab=96.17  E-value=0.29  Score=34.98  Aligned_cols=136  Identities=12%  Similarity=0.099  Sum_probs=76.5

Q ss_pred             HHHHHHHhCCCCCCHhhHHHHHHHHhcCCChhHHHHHHHHHhhcCCCCccHHHHHHHHHHHHhcCcHHHHHHHHHHHhhC
Q 021791          140 ELLGEMVRNGVSPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDDLCVPNIHTYNILIGMFMALNRMDMVREIWNHVKGS  219 (307)
Q Consensus       140 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~  219 (307)
                      +.+..+.+.++.|+...+..+++.+.+.|++....    ++...+. -+|+......+-.+  .+....+.++--.|..+
T Consensus        15 EYirSl~~~~i~~~~~L~~lli~lLi~~~~~~~L~----qllq~~V-i~DSk~lA~~LLs~--~~~~~~~~Ql~lDMLkR   87 (167)
T PF07035_consen   15 EYIRSLNQHNIPVQHELYELLIDLLIRNGQFSQLH----QLLQYHV-IPDSKPLACQLLSL--GNQYPPAYQLGLDMLKR   87 (167)
T ss_pred             HHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHH----HHHhhcc-cCCcHHHHHHHHHh--HccChHHHHHHHHHHHH
Confidence            34455556677777777777888877777755433    3333443 33333333222221  22333444444344332


Q ss_pred             CCCCCHHhHHHHHHHHHccCcHHHHHHHHHHHHHcCCCCcHhhHHHHHHHHhhchhHHHHHHHHHHhhhcC
Q 021791          220 ELGLDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDEES  290 (307)
Q Consensus       220 ~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~  290 (307)
                          =...+..+++.+...|++-+|+.+.+.....    +......++.+..+.++...-..+++-..+.+
T Consensus        88 ----L~~~~~~iievLL~~g~vl~ALr~ar~~~~~----~~~~~~~fLeAA~~~~D~~lf~~V~~ff~~~n  150 (167)
T PF07035_consen   88 ----LGTAYEEIIEVLLSKGQVLEALRYARQYHKV----DSVPARKFLEAAANSNDDQLFYAVFRFFEERN  150 (167)
T ss_pred             ----hhhhHHHHHHHHHhCCCHHHHHHHHHHcCCc----ccCCHHHHHHHHHHcCCHHHHHHHHHHHHHhh
Confidence                1114566777778888888888887765322    22233456677777777777777777666654

>COG4105 ComL DNA uptake lipoprotein [General function prediction only]

Probab=96.16  E-value=0.4  Score=36.59  Aligned_cols=173  Identities=9%  Similarity=0.093  Sum_probs=97.2

Q ss_pred             HHHhcCCchhHHHHHHHHHHcCC--CCchhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHhcC---
Q 021791           93 VYSRAHKPQLSLDKLNFMKEKGI--CPTVATYTSVVKCLCSCGRIEDAEELLGEMVRNGVSPSAETYNCFFKEYRGR---  167 (307)
Q Consensus        93 ~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---  167 (307)
                      .-.+.|++++|.+.|+.+.....  +-...+.-.++-++.+.+++++|....++.....+.-....|...|.+.+.-   
T Consensus        43 ~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~~YlkgLs~~~~i  122 (254)
T COG4105          43 TELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYAYYLKGLSYFFQI  122 (254)
T ss_pred             HHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHhccC
Confidence            44578899999999999876632  2234555666777888899999999998887754332333444444444321   


Q ss_pred             ----CChh---HHHHHHHHHhhcCCCCccHHHHHHHHHHHHhcCcHHHHHHHHHHHhhCCCCCCHHh-H-HHHHHHHHcc
Q 021791          168 ----KDAN---GAMKLYRQMKEDDLCVPNIHTYNILIGMFMALNRMDMVREIWNHVKGSELGLDLDS-Y-TMLIHGLCEK  238 (307)
Q Consensus       168 ----~~~~---~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-~-~~li~~~~~~  238 (307)
                          .+..   .|..-|+.+...   -||+             .-...|..-+..+..      ... + ..+.+-|.+.
T Consensus       123 ~~~~rDq~~~~~A~~~f~~~i~r---yPnS-------------~Ya~dA~~~i~~~~d------~LA~~Em~IaryY~kr  180 (254)
T COG4105         123 DDVTRDQSAARAAFAAFKELVQR---YPNS-------------RYAPDAKARIVKLND------ALAGHEMAIARYYLKR  180 (254)
T ss_pred             CccccCHHHHHHHHHHHHHHHHH---CCCC-------------cchhhHHHHHHHHHH------HHHHHHHHHHHHHHHh
Confidence                1111   233333333333   2322             112222222222211      011 1 2344567788


Q ss_pred             CcHHHHHHHHHHHHHcCCCCcHh---hHHHHHHHHhhchhHHHHHHHHHHhhh
Q 021791          239 QKWKEACQYFVEMIEKGLLPQKV---TFETLYRGLIQSDMLRTWRRLKKKLDE  288 (307)
Q Consensus       239 g~~~~a~~~~~~~~~~~~~p~~~---~~~~l~~~~~~~g~~~~a~~~~~~~~~  288 (307)
                      |.+..|..-+++|++. .+-+..   .+-.+..+|...|..++|...-+-+..
T Consensus       181 ~~~~AA~nR~~~v~e~-y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl~~  232 (254)
T COG4105         181 GAYVAAINRFEEVLEN-YPDTSAVREALARLEEAYYALGLTDEAKKTAKVLGA  232 (254)
T ss_pred             cChHHHHHHHHHHHhc-cccccchHHHHHHHHHHHHHhCChHHHHHHHHHHHh
Confidence            8888888888888876 322222   355556777788877777776665543

>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]

Probab=96.15  E-value=0.86  Score=40.27  Aligned_cols=115  Identities=10%  Similarity=0.082  Sum_probs=86.5

Q ss_pred             CCCHhhHHHHHHHHhcCCChhHHHHHHHHHhhcCCCCccHHHHHHHHHHHHhcCcHHHHHHHHHHHhhCCCCCCHHhHHH
Q 021791          151 SPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDDLCVPNIHTYNILIGMFMALNRMDMVREIWNHVKGSELGLDLDSYTM  230 (307)
Q Consensus       151 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~  230 (307)
                      ....-+.+--+.-+...|+..+|.++-.+..     .||...|-.=+.+++..++|++-+++-+..+      ++.-|..
T Consensus       681 ~f~dlSl~dTv~~li~~g~~k~a~ql~~~Fk-----ipdKr~~wLk~~aLa~~~kweeLekfAkskk------sPIGy~P  749 (829)
T KOG2280|consen  681 SFVDLSLHDTVTTLILIGQNKRAEQLKSDFK-----IPDKRLWWLKLTALADIKKWEELEKFAKSKK------SPIGYLP  749 (829)
T ss_pred             ccccCcHHHHHHHHHHccchHHHHHHHHhcC-----CcchhhHHHHHHHHHhhhhHHHHHHHHhccC------CCCCchh
Confidence            3344455666677788899999999888876     7889999999999999999998777655443      3567888


Q ss_pred             HHHHHHccCcHHHHHHHHHHHHHcCCCCcHhhHHHHHHHHhhchhHHHHHHHHHH
Q 021791          231 LIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKK  285 (307)
Q Consensus       231 li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~  285 (307)
                      .+.+|.+.|+.++|.+++-+...     ..    -...+|.+.|++.+|.++.-+
T Consensus       750 FVe~c~~~~n~~EA~KYiprv~~-----l~----ekv~ay~~~~~~~eAad~A~~  795 (829)
T KOG2280|consen  750 FVEACLKQGNKDEAKKYIPRVGG-----LQ----EKVKAYLRVGDVKEAADLAAE  795 (829)
T ss_pred             HHHHHHhcccHHHHhhhhhccCC-----hH----HHHHHHHHhccHHHHHHHHHH
Confidence            99999999999999999886531     11    345667777777776665443

>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]

Probab=96.14  E-value=0.63  Score=38.62  Aligned_cols=92  Identities=14%  Similarity=0.209  Sum_probs=59.1

Q ss_pred             HHHHHHHHHHHHhcCcHHHHHHHHHHHhhCC-CCCCHHhHHHHHHHHHccCcHHHHHHHHHHHHHcCCCCcHhhH-HHHH
Q 021791          190 IHTYNILIGMFMALNRMDMVREIWNHVKGSE-LGLDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTF-ETLY  267 (307)
Q Consensus       190 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~-~~l~  267 (307)
                      ..+|...+.+-.+...++.|+++|-++.+.+ ..+++..++++++-++ .|+..-|..+|+--+..  .||...| .-.+
T Consensus       397 t~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~-~~d~~ta~~ifelGl~~--f~d~~~y~~kyl  473 (660)
T COG5107         397 TFVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYA-TGDRATAYNIFELGLLK--FPDSTLYKEKYL  473 (660)
T ss_pred             hhHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHh-cCCcchHHHHHHHHHHh--CCCchHHHHHHH
Confidence            3577788888888888888899998888877 5567777888887766 46677777777754433  3444333 2233


Q ss_pred             HHHhhchhHHHHHHHHH
Q 021791          268 RGLIQSDMLRTWRRLKK  284 (307)
Q Consensus       268 ~~~~~~g~~~~a~~~~~  284 (307)
                      .-+...++-+.|+.+|+
T Consensus       474 ~fLi~inde~naraLFe  490 (660)
T COG5107         474 LFLIRINDEENARALFE  490 (660)
T ss_pred             HHHHHhCcHHHHHHHHH
Confidence            33444444444444444

>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []

Probab=96.09  E-value=0.52  Score=37.24  Aligned_cols=220  Identities=8%  Similarity=0.028  Sum_probs=124.4

Q ss_pred             HHHHHHHHHHHHHHHhcC--CCCCHH------HHHHHHHHHHhcC-CchhHHHHHHHHHHc--------CCCCc-----h
Q 021791           62 EKTIRNAEKVFDEMRVRG--IEPDVT------SFSIVLHVYSRAH-KPQLSLDKLNFMKEK--------GICPT-----V  119 (307)
Q Consensus        62 ~~~~~~a~~~~~~~~~~~--~~~~~~------~~~~ll~~~~~~~-~~~~a~~~~~~~~~~--------~~~~~-----~  119 (307)
                      .|+.+.|..++.+.....  ..|+..      .|+.-.. ....+ +++.|...+++..+.        ...|+     .
T Consensus         6 ~~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G~~-l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~elr~   84 (278)
T PF08631_consen    6 QGDLDLAEHMYSKAKDLLNSLDPDMAEELARVCYNIGKS-LLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSELRL   84 (278)
T ss_pred             hCCHHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHHHH-HHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHHHH
Confidence            678888888888876643  233322      2333333 33445 888887777665433        12223     3


Q ss_pred             hhHHHHHHHHHhcCChH---HHHHHHHHHHhCCCCCCHhhHHHHHHHHhcCCChhHHHHHHHHHhhcCCCCccHHHHHHH
Q 021791          120 ATYTSVVKCLCSCGRIE---DAEELLGEMVRNGVSPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDDLCVPNIHTYNIL  196 (307)
Q Consensus       120 ~~~~~ll~~~~~~~~~~---~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l  196 (307)
                      .+...++.+|...+..+   +|.++++.+...... .+.++..-+..+.+.++.+.+.+++.+|...-.  .....+..+
T Consensus        85 ~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~~~-~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~~~--~~e~~~~~~  161 (278)
T PF08631_consen   85 SILRLLANAYLEWDTYESVEKALNALRLLESEYGN-KPEVFLLKLEILLKSFDEEEYEEILMRMIRSVD--HSESNFDSI  161 (278)
T ss_pred             HHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhCCC-CcHHHHHHHHHHhccCChhHHHHHHHHHHHhcc--cccchHHHH
Confidence            45677888888877655   466666666544322 345565667777778999999999999998742  233455555


Q ss_pred             HHHH---HhcCcHHHHHHHHHHHhhCCCCCCHH-hHHHH-HH-H--HHccC------cHHHHHHHHHHHHHc-CCCCcHh
Q 021791          197 IGMF---MALNRMDMVREIWNHVKGSELGLDLD-SYTML-IH-G--LCEKQ------KWKEACQYFVEMIEK-GLLPQKV  261 (307)
Q Consensus       197 ~~~~---~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~l-i~-~--~~~~g------~~~~a~~~~~~~~~~-~~~p~~~  261 (307)
                      +..+   .... ...+...+..+....+.|... ....+ +. .  ....+      ..+....++....+. +.+.+..
T Consensus       162 l~~i~~l~~~~-~~~a~~~ld~~l~~r~~~~~~~~~e~~vl~~~~~~~~~~~~~~~~~i~~l~~~~~~v~~~~~~~ls~~  240 (278)
T PF08631_consen  162 LHHIKQLAEKS-PELAAFCLDYLLLNRFKSSEDQWLEKLVLTRVLLTTQSKDLSSSEKIESLEELLSIVEHSLGKQLSAE  240 (278)
T ss_pred             HHHHHHHHhhC-cHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHcCCccccchhHHHHHHHHHHHHHHHhcCCCCHH
Confidence            5554   3333 345666666655544555553 11111 11 1  11211      144444445533322 3344444


Q ss_pred             hHHHHH-------HHHhhchhHHHHHHHHHHh
Q 021791          262 TFETLY-------RGLIQSDMLRTWRRLKKKL  286 (307)
Q Consensus       262 ~~~~l~-------~~~~~~g~~~~a~~~~~~~  286 (307)
                      +-.++.       ..+.+.++++.|.++++.-
T Consensus       241 ~~~a~~~LLW~~~~~~~~~k~y~~A~~w~~~a  272 (278)
T PF08631_consen  241 AASAIHTLLWNKGKKHYKAKNYDEAIEWYELA  272 (278)
T ss_pred             HHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHH
Confidence            433332       3466788999999998853

It is also involved in sporulation [].

>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=96.06  E-value=0.2  Score=38.47  Aligned_cols=62  Identities=19%  Similarity=0.130  Sum_probs=28.2

Q ss_pred             HHHHHHHHHhcCcHHHHHHHHHHHhhCCC--CCCHHhHHHHHHHHHccCcHHHHHHHHHHHHHc
Q 021791          193 YNILIGMFMALNRMDMVREIWNHVKGSEL--GLDLDSYTMLIHGLCEKQKWKEACQYFVEMIEK  254 (307)
Q Consensus       193 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~  254 (307)
                      +-.|...+...|+++.|..+|..+.+.-.  +.-+.++-.+..+..+.|+.++|..+|+++.++
T Consensus       181 ~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~~~~~l~~~d~A~atl~qv~k~  244 (262)
T COG1729         181 YYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGVSLGRLGNTDEACATLQQVIKR  244 (262)
T ss_pred             HHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence            34444555555555555555444443210  011233444444445555555555555555544

>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional

Probab=96.05  E-value=0.46  Score=39.59  Aligned_cols=66  Identities=20%  Similarity=0.151  Sum_probs=51.6

Q ss_pred             chhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCH--hhHHHHHHHHhcCCChhHHHHHHHHHhhc
Q 021791          118 TVATYTSVVKCLCSCGRIEDAEELLGEMVRNGVSPSA--ETYNCFFKEYRGRKDANGAMKLYRQMKED  183 (307)
Q Consensus       118 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~~  183 (307)
                      +...++.+..+|.+.|++++|+..|++..+.+.....  .+|..+..+|...|+.++|...+++..+.
T Consensus        74 ~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel  141 (453)
T PLN03098         74 TAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD  141 (453)
T ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence            5677888888888889999999988888876433111  35788888888888888888888888775

>smart00299 CLH Clathrin heavy chain repeat homology

Probab=96.01  E-value=0.31  Score=33.89  Aligned_cols=127  Identities=12%  Similarity=0.163  Sum_probs=84.7

Q ss_pred             HHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHhcCCChhHHHHHHHHHhhcCCCCccHHHHHHHHHHHH
Q 021791          122 YTSVVKCLCSCGRIEDAEELLGEMVRNGVSPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDDLCVPNIHTYNILIGMFM  201 (307)
Q Consensus       122 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~  201 (307)
                      ...++..+...+.+......++.+...+. .+....+.++..|++.+ ..+....+..   .    .+......+++.|.
T Consensus        10 ~~~vv~~~~~~~~~~~l~~yLe~~~~~~~-~~~~~~~~li~ly~~~~-~~~ll~~l~~---~----~~~yd~~~~~~~c~   80 (140)
T smart00299       10 VSEVVELFEKRNLLEELIPYLESALKLNS-ENPALQTKLIELYAKYD-PQKEIERLDN---K----SNHYDIEKVGKLCE   80 (140)
T ss_pred             HHHHHHHHHhCCcHHHHHHHHHHHHccCc-cchhHHHHHHHHHHHHC-HHHHHHHHHh---c----cccCCHHHHHHHHH
Confidence            45677777778889999999999888764 57788899999988764 3444455442   1    12333455778888


Q ss_pred             hcCcHHHHHHHHHHHhhCCCCCCHHhHHHHHHHHHcc-CcHHHHHHHHHHHHHcCCCCcHhhHHHHHHHHhh
Q 021791          202 ALNRMDMVREIWNHVKGSELGLDLDSYTMLIHGLCEK-QKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQ  272 (307)
Q Consensus       202 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~-g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~  272 (307)
                      +.+.++++..++..+..         +...+..+... ++++.|.+++.+-      .++..|..++..+..
T Consensus        81 ~~~l~~~~~~l~~k~~~---------~~~Al~~~l~~~~d~~~a~~~~~~~------~~~~lw~~~~~~~l~  137 (140)
T smart00299       81 KAKLYEEAVELYKKDGN---------FKDAIVTLIEHLGNYEKAIEYFVKQ------NNPELWAEVLKALLD  137 (140)
T ss_pred             HcCcHHHHHHHHHhhcC---------HHHHHHHHHHcccCHHHHHHHHHhC------CCHHHHHHHHHHHHc
Confidence            88888888888876542         22233334444 7788888877751      255677777766543

>KOG2041 consensus WD40 repeat protein [General function prediction only]

Probab=96.00  E-value=1  Score=39.71  Aligned_cols=39  Identities=18%  Similarity=0.151  Sum_probs=23.8

Q ss_pred             HHHHHHccCcHHHHHHHHHHHHHc-CCCCcHhhHHHHHHH
Q 021791          231 LIHGLCEKQKWKEACQYFVEMIEK-GLLPQKVTFETLYRG  269 (307)
Q Consensus       231 li~~~~~~g~~~~a~~~~~~~~~~-~~~p~~~~~~~l~~~  269 (307)
                      |.+--...|..+.|+..--.+.+. .+-|....|..+.-+
T Consensus      1027 lAQrql~eg~v~~Al~Tal~L~DYEd~lpP~eiySllALa 1066 (1189)
T KOG2041|consen 1027 LAQRQLFEGRVKDALQTALILSDYEDFLPPAEIYSLLALA 1066 (1189)
T ss_pred             HHHHHHHhchHHHHHHHHhhhccHhhcCCHHHHHHHHHHH
Confidence            334445667888887776555443 456667777666543

>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=95.96  E-value=0.4  Score=39.04  Aligned_cols=125  Identities=9%  Similarity=0.035  Sum_probs=91.8

Q ss_pred             HHHHhcCCchhHHHHHHHHHHc-----CCC---------CchhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHhhH
Q 021791           92 HVYSRAHKPQLSLDKLNFMKEK-----GIC---------PTVATYTSVVKCLCSCGRIEDAEELLGEMVRNGVSPSAETY  157 (307)
Q Consensus        92 ~~~~~~~~~~~a~~~~~~~~~~-----~~~---------~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~  157 (307)
                      ..+.+.|++..|...|+.....     +..         .-..+++.+..+|.+.+++..|++.-++.+..+. +|....
T Consensus       216 n~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~-~N~KAL  294 (397)
T KOG0543|consen  216 NVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLELDP-NNVKAL  294 (397)
T ss_pred             hHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHhcCC-CchhHH
Confidence            4567888888888887775432     111         1244678888999999999999999999998764 377777


Q ss_pred             HHHHHHHhcCCChhHHHHHHHHHhhcCCCCccHHHHHHHHHHHHhcCcHHH-HHHHHHHHhhC
Q 021791          158 NCFFKEYRGRKDANGAMKLYRQMKEDDLCVPNIHTYNILIGMFMALNRMDM-VREIWNHVKGS  219 (307)
Q Consensus       158 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~-a~~~~~~~~~~  219 (307)
                      -.-..++...|+++.|...|+.+.+..  +.|..+-+.|+..-.+...... ..++|..|...
T Consensus       295 yRrG~A~l~~~e~~~A~~df~ka~k~~--P~Nka~~~el~~l~~k~~~~~~kekk~y~~mF~k  355 (397)
T KOG0543|consen  295 YRRGQALLALGEYDLARDDFQKALKLE--PSNKAARAELIKLKQKIREYEEKEKKMYANMFAK  355 (397)
T ss_pred             HHHHHHHHhhccHHHHHHHHHHHHHhC--CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence            778889999999999999999999985  4555555555555545444443 46778777653

>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=95.95  E-value=0.21  Score=38.39  Aligned_cols=98  Identities=13%  Similarity=0.132  Sum_probs=60.8

Q ss_pred             hHHHHHHHHHhcCChHHHHHHHHHHHhCCCC--CCHhhHHHHHHHHhcCCChhHHHHHHHHHhhcCCCCc-cHHHHHHHH
Q 021791          121 TYTSVVKCLCSCGRIEDAEELLGEMVRNGVS--PSAETYNCFFKEYRGRKDANGAMKLYRQMKEDDLCVP-NIHTYNILI  197 (307)
Q Consensus       121 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~  197 (307)
                      .|+.-+.. .+.|++..|...|....+..+.  -....+-.|..++...|++++|..+|..+.+...-.| -+..+--|.
T Consensus       144 ~Y~~A~~~-~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg  222 (262)
T COG1729         144 LYNAALDL-YKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLG  222 (262)
T ss_pred             HHHHHHHH-HHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHH
Confidence            55555443 4556677777777777765322  1233455577777777777777777777766532111 235556666


Q ss_pred             HHHHhcCcHHHHHHHHHHHhhC
Q 021791          198 GMFMALNRMDMVREIWNHVKGS  219 (307)
Q Consensus       198 ~~~~~~~~~~~a~~~~~~~~~~  219 (307)
                      ....+.|+.++|..+|+++.+.
T Consensus       223 ~~~~~l~~~d~A~atl~qv~k~  244 (262)
T COG1729         223 VSLGRLGNTDEACATLQQVIKR  244 (262)
T ss_pred             HHHHHhcCHHHHHHHHHHHHHH
Confidence            6667777777777777777765

>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]

Probab=95.93  E-value=0.59  Score=36.49  Aligned_cols=51  Identities=16%  Similarity=0.168  Sum_probs=23.9

Q ss_pred             HhcCCchhHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCChHHHHHHHHHHH
Q 021791           95 SRAHKPQLSLDKLNFMKEKGICPTVATYTSVVKCLCSCGRIEDAEELLGEMV  146 (307)
Q Consensus        95 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~  146 (307)
                      ...|+...+..+|......... +...-..+..+|...|+.+.|..++..+.
T Consensus       145 ~~~e~~~~a~~~~~~al~~~~~-~~~~~~~la~~~l~~g~~e~A~~iL~~lP  195 (304)
T COG3118         145 IEAEDFGEAAPLLKQALQAAPE-NSEAKLLLAECLLAAGDVEAAQAILAALP  195 (304)
T ss_pred             hhccchhhHHHHHHHHHHhCcc-cchHHHHHHHHHHHcCChHHHHHHHHhCc
Confidence            3445555555555544444222 23333444455555555555555555443

>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]

Probab=95.90  E-value=0.17  Score=39.46  Aligned_cols=79  Identities=16%  Similarity=0.146  Sum_probs=58.8

Q ss_pred             HHHHHHHHHHHHhcCcHHHHHHHHHHHhhCCCCCCHHhHHHHHHHHHccCcHHHHHHHHHHHHH-----cCCCCcHhhHH
Q 021791          190 IHTYNILIGMFMALNRMDMVREIWNHVKGSELGLDLDSYTMLIHGLCEKQKWKEACQYFVEMIE-----KGLLPQKVTFE  264 (307)
Q Consensus       190 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~-----~~~~p~~~~~~  264 (307)
                      ..++..++..+...|+.+.+...+++..... +-+...|..++.+|.+.|+...|+..|+++.+     .|+.|...+..
T Consensus       153 ~~~l~~lae~~~~~~~~~~~~~~l~~Li~~d-p~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~  231 (280)
T COG3629         153 IKALTKLAEALIACGRADAVIEHLERLIELD-PYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRA  231 (280)
T ss_pred             HHHHHHHHHHHHhcccHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHH
Confidence            3466777777888888888888888887764 33777888888888888888888888887765     37777777666


Q ss_pred             HHHHH
Q 021791          265 TLYRG  269 (307)
Q Consensus       265 ~l~~~  269 (307)
                      .....
T Consensus       232 ~y~~~  236 (280)
T COG3629         232 LYEEI  236 (280)
T ss_pred             HHHHH
Confidence            55555

>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]

Probab=95.89  E-value=0.72  Score=41.28  Aligned_cols=143  Identities=13%  Similarity=0.153  Sum_probs=96.2

Q ss_pred             HHHHHHhcCCchhHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHhcCCC
Q 021791           90 VLHVYSRAHKPQLSLDKLNFMKEKGICPTVATYTSVVKCLCSCGRIEDAEELLGEMVRNGVSPSAETYNCFFKEYRGRKD  169 (307)
Q Consensus        90 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~  169 (307)
                      ....+.+.|++++|...|-+-... +.|+     .++.-|........-...++.+.+.|+. +.+.-..|+.+|.+.++
T Consensus       374 Ygd~Ly~Kgdf~~A~~qYI~tI~~-le~s-----~Vi~kfLdaq~IknLt~YLe~L~~~gla-~~dhttlLLncYiKlkd  446 (933)
T KOG2114|consen  374 YGDYLYGKGDFDEATDQYIETIGF-LEPS-----EVIKKFLDAQRIKNLTSYLEALHKKGLA-NSDHTTLLLNCYIKLKD  446 (933)
T ss_pred             HHHHHHhcCCHHHHHHHHHHHccc-CChH-----HHHHHhcCHHHHHHHHHHHHHHHHcccc-cchhHHHHHHHHHHhcc
Confidence            334456789999999888766543 2322     3566677777777888888888888886 66777889999999999


Q ss_pred             hhHHHHHHHHHhhcCCCCccHHHHHHHHHHHHhcCcHHHHHHHHHHHhhCCCCCCHHhHHHHHHHHHccCcHHHHHHHHH
Q 021791          170 ANGAMKLYRQMKEDDLCVPNIHTYNILIGMFMALNRMDMVREIWNHVKGSELGLDLDSYTMLIHGLCEKQKWKEACQYFV  249 (307)
Q Consensus       170 ~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~  249 (307)
                      .++..++.+... .|...-|   ....+..+.+.+-.++|..+-.....     +......+++   ..+++++|++.+.
T Consensus       447 ~~kL~efI~~~~-~g~~~fd---~e~al~Ilr~snyl~~a~~LA~k~~~-----he~vl~ille---~~~ny~eAl~yi~  514 (933)
T KOG2114|consen  447 VEKLTEFISKCD-KGEWFFD---VETALEILRKSNYLDEAELLATKFKK-----HEWVLDILLE---DLHNYEEALRYIS  514 (933)
T ss_pred             hHHHHHHHhcCC-Ccceeee---HHHHHHHHHHhChHHHHHHHHHHhcc-----CHHHHHHHHH---HhcCHHHHHHHHh
Confidence            988887777665 3321222   34556666677777777766555443     3334444443   4667788887776


Q ss_pred             HH
Q 021791          250 EM  251 (307)
Q Consensus       250 ~~  251 (307)
                      .+
T Consensus       515 sl  516 (933)
T KOG2114|consen  515 SL  516 (933)
T ss_pred             cC
Confidence            54

>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=95.89  E-value=0.14  Score=43.19  Aligned_cols=160  Identities=11%  Similarity=0.036  Sum_probs=97.6

Q ss_pred             HHHHhcCchhhHHHHHH-HHHhcCCCCcHHHHHHHHHHHHhhCCCCcchhhHHHHHHHHHHHHHHHhcCCCCCHHHHHHH
Q 021791           12 YGWCKINRIDMAERFLG-EMIERGVEPNVVTYNVLLNGVCRRASLHPNERFEKTIRNAEKVFDEMRVRGIEPDVTSFSIV   90 (307)
Q Consensus        12 ~~~~~~g~~~~a~~~~~-~~~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l   90 (307)
                      +...-.|+++.+.++.. .-.-..++  ....+.+++-+.+          .|..+.|+++-.+-.            .-
T Consensus       269 k~av~~~d~~~v~~~i~~~~ll~~i~--~~~~~~i~~fL~~----------~G~~e~AL~~~~D~~------------~r  324 (443)
T PF04053_consen  269 KTAVLRGDFEEVLRMIAASNLLPNIP--KDQGQSIARFLEK----------KGYPELALQFVTDPD------------HR  324 (443)
T ss_dssp             HHHHHTT-HHH-----HHHHTGGG----HHHHHHHHHHHHH----------TT-HHHHHHHSS-HH------------HH
T ss_pred             HHHHHcCChhhhhhhhhhhhhcccCC--hhHHHHHHHHHHH----------CCCHHHHHhhcCChH------------HH
Confidence            44556788888877775 11111122  4446667766666          677778876653322            12


Q ss_pred             HHHHHhcCCchhHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHhcCCCh
Q 021791           91 LHVYSRAHKPQLSLDKLNFMKEKGICPTVATYTSVVKCLCSCGRIEDAEELLGEMVRNGVSPSAETYNCFFKEYRGRKDA  170 (307)
Q Consensus        91 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~  170 (307)
                      .....+.|+++.|.++.++.      .+...|..|.....+.|+++-|++.|++..+         +..|+-.|.-.|+.
T Consensus       325 FeLAl~lg~L~~A~~~a~~~------~~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d---------~~~L~lLy~~~g~~  389 (443)
T PF04053_consen  325 FELALQLGNLDIALEIAKEL------DDPEKWKQLGDEALRQGNIELAEECYQKAKD---------FSGLLLLYSSTGDR  389 (443)
T ss_dssp             HHHHHHCT-HHHHHHHCCCC------STHHHHHHHHHHHHHTTBHHHHHHHHHHCT----------HHHHHHHHHHCT-H
T ss_pred             hHHHHhcCCHHHHHHHHHhc------CcHHHHHHHHHHHHHcCCHHHHHHHHHhhcC---------ccccHHHHHHhCCH
Confidence            34456788888887665332      3677899999999999999999999887643         45666677888888


Q ss_pred             hHHHHHHHHHhhcCCCCccHHHHHHHHHHHHhcCcHHHHHHHHHHHh
Q 021791          171 NGAMKLYRQMKEDDLCVPNIHTYNILIGMFMALNRMDMVREIWNHVK  217 (307)
Q Consensus       171 ~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~  217 (307)
                      +...++.+.....+.  .     +....++.-.|+.++..+++....
T Consensus       390 ~~L~kl~~~a~~~~~--~-----n~af~~~~~lgd~~~cv~lL~~~~  429 (443)
T PF04053_consen  390 EKLSKLAKIAEERGD--I-----NIAFQAALLLGDVEECVDLLIETG  429 (443)
T ss_dssp             HHHHHHHHHHHHTT---H-----HHHHHHHHHHT-HHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHccC--H-----HHHHHHHHHcCCHHHHHHHHHHcC
Confidence            888888887777662  2     333444555788888887776543

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.

>PF13281 DUF4071: Domain of unknown function (DUF4071)

Probab=95.83  E-value=0.83  Score=37.42  Aligned_cols=170  Identities=8%  Similarity=-0.054  Sum_probs=105.8

Q ss_pred             cHHHHHHHHHHHHhhCCCCcchhhHHHHHHHHHHHHHHHhcC---CCCCHHHHHHHHHHHHh---cCCchhHHHHHHHHH
Q 021791           38 NVVTYNVLLNGVCRRASLHPNERFEKTIRNAEKVFDEMRVRG---IEPDVTSFSIVLHVYSR---AHKPQLSLDKLNFMK  111 (307)
Q Consensus        38 ~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~~~~~ll~~~~~---~~~~~~a~~~~~~~~  111 (307)
                      +..+...++-+|-.          ..+++...++.+.+....   +.-....-....-++.+   .|+.++|++++..+.
T Consensus       140 s~div~~lllSyRd----------iqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l  209 (374)
T PF13281_consen  140 SPDIVINLLLSYRD----------IQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVL  209 (374)
T ss_pred             ChhHHHHHHHHhhh----------hhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHH
Confidence            33444455556777          899999999999998652   11122222234445666   899999999999976


Q ss_pred             HcCCCCchhhHHHHHHHHHh---------cCChHHHHHHHHHHHhCCCCCCHhh---HHHHHHHHhcCC-ChhHHHHHH-
Q 021791          112 EKGICPTVATYTSVVKCLCS---------CGRIEDAEELLGEMVRNGVSPSAET---YNCFFKEYRGRK-DANGAMKLY-  177 (307)
Q Consensus       112 ~~~~~~~~~~~~~ll~~~~~---------~~~~~~a~~~~~~~~~~~~~~~~~~---~~~l~~~~~~~~-~~~~a~~~~-  177 (307)
                      .....+++.++..+...|-.         ....++|...|.+.-+..  |+...   +..|+....... ...+..++- 
T Consensus       210 ~~~~~~~~d~~gL~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~~--~~~Y~GIN~AtLL~~~g~~~~~~~el~~i~~  287 (374)
T PF13281_consen  210 ESDENPDPDTLGLLGRIYKDLFLESNFTDRESLDKAIEWYRKGFEIE--PDYYSGINAATLLMLAGHDFETSEELRKIGV  287 (374)
T ss_pred             hccCCCChHHHHHHHHHHHHHHHHcCccchHHHHHHHHHHHHHHcCC--ccccchHHHHHHHHHcCCcccchHHHHHHHH
Confidence            66667788899888877642         224667777777665432  33221   122222222111 111222222 


Q ss_pred             ---HHHhhcCCC--CccHHHHHHHHHHHHhcCcHHHHHHHHHHHhhC
Q 021791          178 ---RQMKEDDLC--VPNIHTYNILIGMFMALNRMDMVREIWNHVKGS  219 (307)
Q Consensus       178 ---~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~  219 (307)
                         ..+.+.+..  ..+...+..++.++.-.|+.++|.+..+.+...
T Consensus       288 ~l~~llg~kg~~~~~~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l  334 (374)
T PF13281_consen  288 KLSSLLGRKGSLEKMQDYWDVATLLEASVLAGDYEKAIQAAEKAFKL  334 (374)
T ss_pred             HHHHHHHhhccccccccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhc
Confidence               122223221  345666788999999999999999999999976

>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]

Probab=95.69  E-value=1.5  Score=39.39  Aligned_cols=178  Identities=14%  Similarity=0.102  Sum_probs=111.0

Q ss_pred             HHHHHHhcCchhhHHHHHHHHHhcCCCCcHHHHHHHHHHHHhhCCCCcchhhHHHHHHHHHHHHHHHhcCCCCCHHHHHH
Q 021791           10 LIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPNERFEKTIRNAEKVFDEMRVRGIEPDVTSFSI   89 (307)
Q Consensus        10 li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~   89 (307)
                      -|....+...++-|..+-+.   .  ..+..+...+.+.|+.--.-      .|++++|...|-+.... +.|+     .
T Consensus       340 kL~iL~kK~ly~~Ai~LAk~---~--~~d~d~~~~i~~kYgd~Ly~------Kgdf~~A~~qYI~tI~~-le~s-----~  402 (933)
T KOG2114|consen  340 KLDILFKKNLYKVAINLAKS---Q--HLDEDTLAEIHRKYGDYLYG------KGDFDEATDQYIETIGF-LEPS-----E  402 (933)
T ss_pred             HHHHHHHhhhHHHHHHHHHh---c--CCCHHHHHHHHHHHHHHHHh------cCCHHHHHHHHHHHccc-CChH-----H
Confidence            34445555555555554322   2  22444444444444431000      67888888888776643 3332     3


Q ss_pred             HHHHHHhcCCchhHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHhcCCC
Q 021791           90 VLHVYSRAHKPQLSLDKLNFMKEKGICPTVATYTSVVKCLCSCGRIEDAEELLGEMVRNGVSPSAETYNCFFKEYRGRKD  169 (307)
Q Consensus        90 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~  169 (307)
                      ++.-|...........+++.+.+.|+. +...-+.|+++|.+.++.++-.+..+... .|..  ..-....+..+.+.+-
T Consensus       403 Vi~kfLdaq~IknLt~YLe~L~~~gla-~~dhttlLLncYiKlkd~~kL~efI~~~~-~g~~--~fd~e~al~Ilr~sny  478 (933)
T KOG2114|consen  403 VIKKFLDAQRIKNLTSYLEALHKKGLA-NSDHTTLLLNCYIKLKDVEKLTEFISKCD-KGEW--FFDVETALEILRKSNY  478 (933)
T ss_pred             HHHHhcCHHHHHHHHHHHHHHHHcccc-cchhHHHHHHHHHHhcchHHHHHHHhcCC-Ccce--eeeHHHHHHHHHHhCh
Confidence            555666666777778888999998876 66666789999999999998877776654 2221  1124456777777788


Q ss_pred             hhHHHHHHHHHhhcCCCCccHHHHHHHHHHHHhcCcHHHHHHHHHHHh
Q 021791          170 ANGAMKLYRQMKEDDLCVPNIHTYNILIGMFMALNRMDMVREIWNHVK  217 (307)
Q Consensus       170 ~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~  217 (307)
                      .++|..+-.....      +......+++   ..+++++|.+.+..+.
T Consensus       479 l~~a~~LA~k~~~------he~vl~ille---~~~ny~eAl~yi~slp  517 (933)
T KOG2114|consen  479 LDEAELLATKFKK------HEWVLDILLE---DLHNYEEALRYISSLP  517 (933)
T ss_pred             HHHHHHHHHHhcc------CHHHHHHHHH---HhcCHHHHHHHHhcCC
Confidence            8888777666543      3344444444   4788888888887654

>PF13428 TPR_14: Tetratricopeptide repeat

Probab=95.68  E-value=0.06  Score=28.72  Aligned_cols=24  Identities=21%  Similarity=0.383  Sum_probs=9.8

Q ss_pred             HHHHHHHhcCChHHHHHHHHHHHh
Q 021791          124 SVVKCLCSCGRIEDAEELLGEMVR  147 (307)
Q Consensus       124 ~ll~~~~~~~~~~~a~~~~~~~~~  147 (307)
                      .+...|...|++++|.++|+++.+
T Consensus         6 ~la~~~~~~G~~~~A~~~~~~~l~   29 (44)
T PF13428_consen    6 ALARAYRRLGQPDEAERLLRRALA   29 (44)
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHH
Confidence            333344444444444444444433

>COG3898 Uncharacterized membrane-bound protein [Function unknown]

Probab=95.54  E-value=1.1  Score=36.65  Aligned_cols=220  Identities=10%  Similarity=0.049  Sum_probs=140.8

Q ss_pred             HhcCchhhHHHHHHHHHhcCCCCcHHHHHHHHHHHHhhCCCCcchhhHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHH
Q 021791           15 CKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPNERFEKTIRNAEKVFDEMRVRGIEPDVTSFSIVLHVY   94 (307)
Q Consensus        15 ~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~   94 (307)
                      .-.|+++.|.+-|+-|...     ..|-..=++++.-..+-      .|..+.|.+.-++....- +.-.-.+...+...
T Consensus       131 l~eG~~~~Ar~kfeAMl~d-----PEtRllGLRgLyleAqr------~GareaAr~yAe~Aa~~A-p~l~WA~~AtLe~r  198 (531)
T COG3898         131 LLEGDYEDARKKFEAMLDD-----PETRLLGLRGLYLEAQR------LGAREAARHYAERAAEKA-PQLPWAARATLEAR  198 (531)
T ss_pred             HhcCchHHHHHHHHHHhcC-----hHHHHHhHHHHHHHHHh------cccHHHHHHHHHHHHhhc-cCCchHHHHHHHHH
Confidence            3469999999999999863     33322222322211000      566677777776665542 22345677888899


Q ss_pred             HhcCCchhHHHHHHHHHHcCC---------------------------------------CCchh-hHHHHHHHHHhcCC
Q 021791           95 SRAHKPQLSLDKLNFMKEKGI---------------------------------------CPTVA-TYTSVVKCLCSCGR  134 (307)
Q Consensus        95 ~~~~~~~~a~~~~~~~~~~~~---------------------------------------~~~~~-~~~~ll~~~~~~~~  134 (307)
                      +..|+|+.|+++++.-++..+                                       .||.. .-..-...+.+.|+
T Consensus       199 ~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ldadp~~Ar~~A~~a~KL~pdlvPaav~AAralf~d~~  278 (531)
T COG3898         199 CAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDADPASARDDALEANKLAPDLVPAAVVAARALFRDGN  278 (531)
T ss_pred             HhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCccchHHHHHHHHHHhccc
Confidence            999999999999877544321                                       11111 11223355788899


Q ss_pred             hHHHHHHHHHHHhCCCCCCHhhHHHHHHHHhcCCChhHHHHHHHHHhhcCCC-CccHHHHHHHHHHHHhcCcHHHHHHHH
Q 021791          135 IEDAEELLGEMVRNGVSPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDDLC-VPNIHTYNILIGMFMALNRMDMVREIW  213 (307)
Q Consensus       135 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~  213 (307)
                      ..++-.+++.+-+....|+.  +.  +-.+.+.|+  .+..-++...+...+ +.+..+...+.++....|++..|..--
T Consensus       279 ~rKg~~ilE~aWK~ePHP~i--a~--lY~~ar~gd--ta~dRlkRa~~L~slk~nnaes~~~va~aAlda~e~~~ARa~A  352 (531)
T COG3898         279 LRKGSKILETAWKAEPHPDI--AL--LYVRARSGD--TALDRLKRAKKLESLKPNNAESSLAVAEAALDAGEFSAARAKA  352 (531)
T ss_pred             hhhhhhHHHHHHhcCCChHH--HH--HHHHhcCCC--cHHHHHHHHHHHHhcCccchHHHHHHHHHHHhccchHHHHHHH
Confidence            99999999999887655553  22  222344554  344444443332222 345666777888888899999888777


Q ss_pred             HHHhhCCCCCCHHhHHHHHHHHHc-cCcHHHHHHHHHHHHHc
Q 021791          214 NHVKGSELGLDLDSYTMLIHGLCE-KQKWKEACQYFVEMIEK  254 (307)
Q Consensus       214 ~~~~~~~~~~~~~~~~~li~~~~~-~g~~~~a~~~~~~~~~~  254 (307)
                      +.....  .|....|..|...-.. .|+-.++...+.+....
T Consensus       353 eaa~r~--~pres~~lLlAdIeeAetGDqg~vR~wlAqav~A  392 (531)
T COG3898         353 EAAARE--APRESAYLLLADIEEAETGDQGKVRQWLAQAVKA  392 (531)
T ss_pred             HHHhhh--CchhhHHHHHHHHHhhccCchHHHHHHHHHHhcC
Confidence            666654  6788888888876644 49999999999988765

>PF13428 TPR_14: Tetratricopeptide repeat

Probab=95.49  E-value=0.057  Score=28.81  Aligned_cols=27  Identities=11%  Similarity=0.139  Sum_probs=12.8

Q ss_pred             HHHHHHHHHhcCcHHHHHHHHHHHhhC
Q 021791          193 YNILIGMFMALNRMDMVREIWNHVKGS  219 (307)
Q Consensus       193 ~~~l~~~~~~~~~~~~a~~~~~~~~~~  219 (307)
                      +..+..+|...|++++|+++++++.+.
T Consensus         4 ~~~la~~~~~~G~~~~A~~~~~~~l~~   30 (44)
T PF13428_consen    4 WLALARAYRRLGQPDEAERLLRRALAL   30 (44)
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence            344444444444555555444444443

>PRK11906 transcriptional regulator; Provisional

Probab=95.44  E-value=1.3  Score=37.09  Aligned_cols=137  Identities=12%  Similarity=0.086  Sum_probs=70.9

Q ss_pred             HHH--HHHHHHHHhhCCCCcchhhHHHHHHHHHHHHHHHhc-CCCCCH-HHHHHHHHHHHh---------cCCchhHHHH
Q 021791           40 VTY--NVLLNGVCRRASLHPNERFEKTIRNAEKVFDEMRVR-GIEPDV-TSFSIVLHVYSR---------AHKPQLSLDK  106 (307)
Q Consensus        40 ~~~--~~ll~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~-~~~~~ll~~~~~---------~~~~~~a~~~  106 (307)
                      ..|  ..++++.....+..     ....+.|+.+|.+.... .+.|+- ..|..+..++..         ..+..+|.++
T Consensus       252 ~a~~~d~ylrg~~~~~~~t-----~~~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~  326 (458)
T PRK11906        252 NHYLSDEMLAGKKELYDFT-----PESIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALEL  326 (458)
T ss_pred             cchhhHHHHHHHHHhhccC-----HHHHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHH
Confidence            455  55666555532222     45667888888888722 234432 333333322221         1122344455


Q ss_pred             HHHHHHcCCCCchhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHhcCCChhHHHHHHHHHhhc
Q 021791          107 LNFMKEKGICPTVATYTSVVKCLCSCGRIEDAEELLGEMVRNGVSPSAETYNCFFKEYRGRKDANGAMKLYRQMKED  183 (307)
Q Consensus       107 ~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~  183 (307)
                      -+...+.+.. |+.....+..+..-.++++.|...|++....++. ...+|......+.-.|+.++|.+.+++..+.
T Consensus       327 A~rAveld~~-Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~Pn-~A~~~~~~~~~~~~~G~~~~a~~~i~~alrL  401 (458)
T PRK11906        327 LDYVSDITTV-DGKILAIMGLITGLSGQAKVSHILFEQAKIHSTD-IASLYYYRALVHFHNEKIEEARICIDKSLQL  401 (458)
T ss_pred             HHHHHhcCCC-CHHHHHHHHHHHHhhcchhhHHHHHHHHhhcCCc-cHHHHHHHHHHHHHcCCHHHHHHHHHHHhcc
Confidence            5555555432 5666666666556666666666666666654322 3334444444445566666666666665444

>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]

Probab=95.37  E-value=0.093  Score=42.71  Aligned_cols=223  Identities=12%  Similarity=0.031  Sum_probs=127.9

Q ss_pred             HHHHHHHHHHHHHHHhcCCCCCHH----HHHHHHHHHHhcCCchhHHHHHHHH--HHc--CC-CCchhhHHHHHHHHHhc
Q 021791           62 EKTIRNAEKVFDEMRVRGIEPDVT----SFSIVLHVYSRAHKPQLSLDKLNFM--KEK--GI-CPTVATYTSVVKCLCSC  132 (307)
Q Consensus        62 ~~~~~~a~~~~~~~~~~~~~~~~~----~~~~ll~~~~~~~~~~~a~~~~~~~--~~~--~~-~~~~~~~~~ll~~~~~~  132 (307)
                      .|+......+|+..++-|-. |..    .|.-|..+|.-.+++++|+++...=  ...  |- .-...+...|.+.+--.
T Consensus        30 ~gdcraGv~ff~aA~qvGTe-Dl~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~lgdklGEAKssgNLGNtlKv~  108 (639)
T KOG1130|consen   30 MGDCRAGVDFFKAALQVGTE-DLSTLSAIYSQLGNAYFYLKDYEKALKYHTHDLTLARLLGDKLGEAKSSGNLGNTLKVK  108 (639)
T ss_pred             ccchhhhHHHHHHHHHhcch-HHHHHHHHHHHhcchhhhHhhHHHHHhhhhhhHHHHHHhcchhccccccccccchhhhh
Confidence            67778888999999888733 433    4666667777788888888875321  111  10 11223334455556666


Q ss_pred             CChHHHHHHHHHH----HhCCCC-CCHhhHHHHHHHHhcCCC--------------------hhHHHHHHHHHhhc----
Q 021791          133 GRIEDAEELLGEM----VRNGVS-PSAETYNCFFKEYRGRKD--------------------ANGAMKLYRQMKED----  183 (307)
Q Consensus       133 ~~~~~a~~~~~~~----~~~~~~-~~~~~~~~l~~~~~~~~~--------------------~~~a~~~~~~~~~~----  183 (307)
                      |.+++|...-.+-    .+.|-+ .....+..+...|...|+                    ++.|.++|.+-.+.    
T Consensus       109 G~fdeA~~cc~rhLd~areLgDrv~e~RAlYNlgnvYhakGk~~g~~~pee~g~f~~ev~~al~~Av~fy~eNL~l~~~l  188 (639)
T KOG1130|consen  109 GAFDEALTCCFRHLDFARELGDRVLESRALYNLGNVYHAKGKCTGLEAPEEKGAFNAEVTSALENAVKFYMENLELSEKL  188 (639)
T ss_pred             cccchHHHHHHHHhHHHHHHhHHHhhhHHHhhhhhhhhhcccccCCCChhhcccccHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            7777765443221    222211 122344445556654432                    12344444332211    


Q ss_pred             CCCCccHHHHHHHHHHHHhcCcHHHHHHHHHH----HhhCCCC-CCHHhHHHHHHHHHccCcHHHHHHHHHHHHHc----
Q 021791          184 DLCVPNIHTYNILIGMFMALNRMDMVREIWNH----VKGSELG-LDLDSYTMLIHGLCEKQKWKEACQYFVEMIEK----  254 (307)
Q Consensus       184 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~----~~~~~~~-~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~----  254 (307)
                      +.--.--..|..|...|.-.|+++.|+...+.    .++.|-+ .....+..+..+++-.|+++.|.+.|+.-...    
T Consensus       189 gDr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAiel  268 (639)
T KOG1130|consen  189 GDRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIEL  268 (639)
T ss_pred             hhHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHh
Confidence            10011123455666666677889998876543    2233322 12346778888899999999999998876443    


Q ss_pred             CC-CCcHhhHHHHHHHHhhchhHHHHHHHHHH
Q 021791          255 GL-LPQKVTFETLYRGLIQSDMLRTWRRLKKK  285 (307)
Q Consensus       255 ~~-~p~~~~~~~l~~~~~~~g~~~~a~~~~~~  285 (307)
                      |- ...+.+..+|..+|.-..++++|+.++.+
T Consensus       269 g~r~vEAQscYSLgNtytll~e~~kAI~Yh~r  300 (639)
T KOG1130|consen  269 GNRTVEAQSCYSLGNTYTLLKEVQKAITYHQR  300 (639)
T ss_pred             cchhHHHHHHHHhhhHHHHHHHHHHHHHHHHH
Confidence            21 23344566788888888888888887764

>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]

Probab=95.28  E-value=2.6  Score=39.53  Aligned_cols=53  Identities=15%  Similarity=0.169  Sum_probs=28.3

Q ss_pred             HHHHHhcCcHHHHHHHHHHHhhCCCCCCHH--hHHHHHHHHHccCcHHHHHHHHHHHH
Q 021791          197 IGMFMALNRMDMVREIWNHVKGSELGLDLD--SYTMLIHGLCEKQKWKEACQYFVEMI  252 (307)
Q Consensus       197 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~li~~~~~~g~~~~a~~~~~~~~  252 (307)
                      +.+|..+|+|.+|..+..++....   +..  +-..|+.-+...++.-+|-++..+..
T Consensus       972 l~a~~~~~dWr~~l~~a~ql~~~~---de~~~~a~~L~s~L~e~~kh~eAa~il~e~~ 1026 (1265)
T KOG1920|consen  972 LKAYKECGDWREALSLAAQLSEGK---DELVILAEELVSRLVEQRKHYEAAKILLEYL 1026 (1265)
T ss_pred             HHHHHHhccHHHHHHHHHhhcCCH---HHHHHHHHHHHHHHHHcccchhHHHHHHHHh
Confidence            445555666666666655544321   111  12455566666666666666665554

>KOG4570 consensus Uncharacterized conserved protein [Function unknown]

Probab=95.03  E-value=0.28  Score=38.53  Aligned_cols=105  Identities=12%  Similarity=0.114  Sum_probs=75.5

Q ss_pred             cCCCCCHHHHHHHHHHHHhcCCchhHHHHHHHHHHcC---CCCchhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCH
Q 021791           78 RGIEPDVTSFSIVLHVYSRAHKPQLSLDKLNFMKEKG---ICPTVATYTSVVKCLCSCGRIEDAEELLGEMVRNGVSPSA  154 (307)
Q Consensus        78 ~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~  154 (307)
                      .|.+.+..+...++..-....+++.+...+-.+...-   ..|+. +-..+++.+. .-++++++.++..=++.|+-||.
T Consensus        58 ~g~~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~-~~~~~irlll-ky~pq~~i~~l~npIqYGiF~dq  135 (418)
T KOG4570|consen   58 RGLPVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNW-TIHTWIRLLL-KYDPQKAIYTLVNPIQYGIFPDQ  135 (418)
T ss_pred             cCCCcceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccc-cHHHHHHHHH-ccChHHHHHHHhCcchhccccch
Confidence            3555566667777776677778888888887776541   12222 2222333333 34677888888888889999999


Q ss_pred             hhHHHHHHHHhcCCChhHHHHHHHHHhhcC
Q 021791          155 ETYNCFFKEYRGRKDANGAMKLYRQMKEDD  184 (307)
Q Consensus       155 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~  184 (307)
                      .+++.+|+.+.+.+++..|.++.-.|....
T Consensus       136 f~~c~l~D~flk~~n~~~aa~vvt~~~~qe  165 (418)
T KOG4570|consen  136 FTFCLLMDSFLKKENYKDAASVVTEVMMQE  165 (418)
T ss_pred             hhHHHHHHHHHhcccHHHHHHHHHHHHHHH
Confidence            999999999999999999998888877665

>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene

Probab=94.96  E-value=2  Score=36.39  Aligned_cols=73  Identities=16%  Similarity=0.201  Sum_probs=49.6

Q ss_pred             HHHHHHHHhcCcHHHHHHHHHHHhhCCCCC-CHHhHHHHHHHHHccCcHHHHHHHHHHHHHcCCCCcHh--hHHHHH
Q 021791          194 NILIGMFMALNRMDMVREIWNHVKGSELGL-DLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKV--TFETLY  267 (307)
Q Consensus       194 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~--~~~~l~  267 (307)
                      ..+..++-+.|+.++|.+.++++.+..... +......|++++...+.+.++..++.+.-+.. -|.+.  +|+..+
T Consensus       263 rRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdDi~-lpkSAti~YTaAL  338 (539)
T PF04184_consen  263 RRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDDIS-LPKSATICYTAAL  338 (539)
T ss_pred             HHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhcccc-CCchHHHHHHHHH
Confidence            456666778899999999988887643221 33456778888888899999988888875432 23333  355444

The molecular function of this protein is uncertain.

>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1

Probab=94.95  E-value=0.92  Score=32.50  Aligned_cols=135  Identities=10%  Similarity=0.134  Sum_probs=73.5

Q ss_pred             HHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCchhHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 021791           69 EKVFDEMRVRGIEPDVTSFSIVLHVYSRAHKPQLSLDKLNFMKEKGICPTVATYTSVVKCLCSCGRIEDAEELLGEMVRN  148 (307)
Q Consensus        69 ~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~  148 (307)
                      .+.++.+.+.+++|+...+..+++.+.+.|.+.    .+..+.+.++-+|.......+-.+.  +....+.++=-+|...
T Consensus        14 lEYirSl~~~~i~~~~~L~~lli~lLi~~~~~~----~L~qllq~~Vi~DSk~lA~~LLs~~--~~~~~~~Ql~lDMLkR   87 (167)
T PF07035_consen   14 LEYIRSLNQHNIPVQHELYELLIDLLIRNGQFS----QLHQLLQYHVIPDSKPLACQLLSLG--NQYPPAYQLGLDMLKR   87 (167)
T ss_pred             HHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHH----HHHHHHhhcccCCcHHHHHHHHHhH--ccChHHHHHHHHHHHH
Confidence            344455566677778888888888888877654    3444555555556555544443222  2233344433333332


Q ss_pred             CCCCCHhhHHHHHHHHhcCCChhHHHHHHHHHhhcCCCCccHHHHHHHHHHHHhcCcHHHHHHHHHHHhh
Q 021791          149 GVSPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDDLCVPNIHTYNILIGMFMALNRMDMVREIWNHVKG  218 (307)
Q Consensus       149 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~  218 (307)
                          =...+..++..+...|++-+|.++.+.......  +   ....++.+..+.++...-..+++-..+
T Consensus        88 ----L~~~~~~iievLL~~g~vl~ALr~ar~~~~~~~--~---~~~~fLeAA~~~~D~~lf~~V~~ff~~  148 (167)
T PF07035_consen   88 ----LGTAYEEIIEVLLSKGQVLEALRYARQYHKVDS--V---PARKFLEAAANSNDDQLFYAVFRFFEE  148 (167)
T ss_pred             ----hhhhHHHHHHHHHhCCCHHHHHHHHHHcCCccc--C---CHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence                011344566667777777777777776543332  1   113455555556665555555554444

>PRK11906 transcriptional regulator; Provisional

Probab=94.94  E-value=1.9  Score=36.17  Aligned_cols=171  Identities=14%  Similarity=0.099  Sum_probs=110.3

Q ss_pred             HHHHHHHHhcC-----chhhHHHHHHHHHhc-CCCCc-HHHHHHHHHHHHhhCCCCcchhhHHHHHHHHHHHHHHHhcCC
Q 021791            8 TSLIYGWCKIN-----RIDMAERFLGEMIER-GVEPN-VVTYNVLLNGVCRRASLHPNERFEKTIRNAEKVFDEMRVRGI   80 (307)
Q Consensus         8 ~~li~~~~~~g-----~~~~a~~~~~~~~~~-~~~p~-~~~~~~ll~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~   80 (307)
                      ...+.+.....     ..+.|+.+|.+.... ...|+ ...|..+-.++...-. ..-........+|.++-++..+.+ 
T Consensus       257 d~ylrg~~~~~~~t~~~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~-~g~~~~~~~~~~a~~~A~rAveld-  334 (458)
T PRK11906        257 DEMLAGKKELYDFTPESIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLAL-HGKSELELAAQKALELLDYVSDIT-  334 (458)
T ss_pred             HHHHHHHHHhhccCHHHHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHH-hcCCCchHHHHHHHHHHHHHHhcC-
Confidence            45555555422     356788899998832 34554 3455554444433211 000001567788888888888876 


Q ss_pred             CCCHHHHHHHHHHHHhcCCchhHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCC-CHhhHHH
Q 021791           81 EPDVTSFSIVLHVYSRAHKPQLSLDKLNFMKEKGICPTVATYTSVVKCLCSCGRIEDAEELLGEMVRNGVSP-SAETYNC  159 (307)
Q Consensus        81 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~  159 (307)
                      +-|......+..+..-.++.+.+...|++....+.. ...+|......+.-.|+.++|.+.+++..+..+.- -....-.
T Consensus       335 ~~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~Pn-~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~~~~~~~~~~  413 (458)
T PRK11906        335 TVDGKILAIMGLITGLSGQAKVSHILFEQAKIHSTD-IASLYYYRALVHFHNEKIEEARICIDKSLQLEPRRRKAVVIKE  413 (458)
T ss_pred             CCCHHHHHHHHHHHHhhcchhhHHHHHHHHhhcCCc-cHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCchhhHHHHHHH
Confidence            448888888888888888899999999999887543 56667777777788999999999999976643221 1223333


Q ss_pred             HHHHHhcCCChhHHHHHHHHHhh
Q 021791          160 FFKEYRGRKDANGAMKLYRQMKE  182 (307)
Q Consensus       160 l~~~~~~~~~~~~a~~~~~~~~~  182 (307)
                      .+..|+.. ..+.+.+++-+-.+
T Consensus       414 ~~~~~~~~-~~~~~~~~~~~~~~  435 (458)
T PRK11906        414 CVDMYVPN-PLKNNIKLYYKETE  435 (458)
T ss_pred             HHHHHcCC-chhhhHHHHhhccc
Confidence            34455544 45677777655443

>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]

Probab=94.93  E-value=1.4  Score=34.53  Aligned_cols=145  Identities=11%  Similarity=0.090  Sum_probs=100.8

Q ss_pred             HHHHHHhcCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHhcCCChhHHHHHHHHHhhcCCCCccHHHHHHHHHHHHhcC
Q 021791          125 VVKCLCSCGRIEDAEELLGEMVRNGVSPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDDLCVPNIHTYNILIGMFMALN  204 (307)
Q Consensus       125 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~  204 (307)
                      -.......|++.+|...|+........ +...-..+..+|...|+.+.|..++..+..... .........-+..+.+..
T Consensus       140 ~~~~~~~~e~~~~a~~~~~~al~~~~~-~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~-~~~~~~l~a~i~ll~qaa  217 (304)
T COG3118         140 EAKELIEAEDFGEAAPLLKQALQAAPE-NSEAKLLLAECLLAAGDVEAAQAILAALPLQAQ-DKAAHGLQAQIELLEQAA  217 (304)
T ss_pred             HhhhhhhccchhhHHHHHHHHHHhCcc-cchHHHHHHHHHHHcCChHHHHHHHHhCcccch-hhHHHHHHHHHHHHHHHh
Confidence            344567889999999999999877544 466777889999999999999999999876542 222333233345555555


Q ss_pred             cHHHHHHHHHHHhhCCCCC-CHHhHHHHHHHHHccCcHHHHHHHHHHHHHcCC-CCcHhhHHHHHHHHhhch
Q 021791          205 RMDMVREIWNHVKGSELGL-DLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGL-LPQKVTFETLYRGLIQSD  274 (307)
Q Consensus       205 ~~~~a~~~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~-~p~~~~~~~l~~~~~~~g  274 (307)
                      ...+...+-...-.   .| |...-..+...+...|+.+.|.+.+-.++.++. .-|...-..++..+.-.|
T Consensus       218 ~~~~~~~l~~~~aa---dPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~d~~~Rk~lle~f~~~g  286 (304)
T COG3118         218 ATPEIQDLQRRLAA---DPDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFEDGEARKTLLELFEAFG  286 (304)
T ss_pred             cCCCHHHHHHHHHh---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccCcHHHHHHHHHHHhcC
Confidence            55555555554444   23 677777888889999999999998887776522 234455666676666555

>KOG4555 consensus TPR repeat-containing protein [Function unknown]

Probab=94.90  E-value=0.48  Score=32.10  Aligned_cols=91  Identities=12%  Similarity=-0.045  Sum_probs=57.0

Q ss_pred             HHhcCCChhHHHHHHHHHhhcCCCCccHHHHHHHHHHHHhcCcHHHHHHHHHHHhhCCCCCCHHhHHHH---HHHHHccC
Q 021791          163 EYRGRKDANGAMKLYRQMKEDDLCVPNIHTYNILIGMFMALNRMDMVREIWNHVKGSELGLDLDSYTML---IHGLCEKQ  239 (307)
Q Consensus       163 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l---i~~~~~~g  239 (307)
                      +....|+.+.|++.|.+....-  +.....||.-.+++.-.|+.++|..=+++..+..-.-+.......   ...|...|
T Consensus        52 alaE~g~Ld~AlE~F~qal~l~--P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g  129 (175)
T KOG4555|consen   52 ALAEAGDLDGALELFGQALCLA--PERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLG  129 (175)
T ss_pred             HHHhccchHHHHHHHHHHHHhc--ccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhC
Confidence            4566777777777777766653  456677777777777777777777777666654222233222222   23455667


Q ss_pred             cHHHHHHHHHHHHHcC
Q 021791          240 KWKEACQYFVEMIEKG  255 (307)
Q Consensus       240 ~~~~a~~~~~~~~~~~  255 (307)
                      +-+.|..=|+..-+.|
T Consensus       130 ~dd~AR~DFe~AA~LG  145 (175)
T KOG4555|consen  130 NDDAARADFEAAAQLG  145 (175)
T ss_pred             chHHHHHhHHHHHHhC
Confidence            7777777777776665

>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene

Probab=94.89  E-value=2.1  Score=36.28  Aligned_cols=59  Identities=15%  Similarity=0.171  Sum_probs=30.3

Q ss_pred             HHHHHHhcCCChhHHHHHHHHHhhcCCCCccHHHHHHHHHHHHhcCcHHHHHHHHHHHh
Q 021791          159 CFFKEYRGRKDANGAMKLYRQMKEDDLCVPNIHTYNILIGMFMALNRMDMVREIWNHVK  217 (307)
Q Consensus       159 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~  217 (307)
                      .+..+..+.|+.++|.+.++++.+......+..+...|+.++...+.+.++..++.+..
T Consensus       264 RLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYd  322 (539)
T PF04184_consen  264 RLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYD  322 (539)
T ss_pred             HHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhc
Confidence            34444555566666666666555442101223344555555556666666666555544

The molecular function of this protein is uncertain.

>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A

Probab=94.87  E-value=0.077  Score=26.85  Aligned_cols=26  Identities=8%  Similarity=0.057  Sum_probs=22.7

Q ss_pred             HHHHHHHHHHhcCchhhHHHHHHHHH
Q 021791            6 MYTSLIYGWCKINRIDMAERFLGEMI   31 (307)
Q Consensus         6 ~~~~li~~~~~~g~~~~a~~~~~~~~   31 (307)
                      +|+.|...|.+.|++++|+++|++..
T Consensus         1 al~~Lg~~~~~~g~~~~Ai~~y~~aL   26 (36)
T PF13176_consen    1 ALNNLGRIYRQQGDYEKAIEYYEQAL   26 (36)
T ss_dssp             HHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            57889999999999999999999955

>COG0457 NrfG FOG: TPR repeat [General function prediction only]

Probab=94.86  E-value=1.2  Score=33.38  Aligned_cols=224  Identities=13%  Similarity=0.053  Sum_probs=154.5

Q ss_pred             cCchhhHHHHHHHHHhcCCCC-cHHHHHHHHHHHHhhCCCCcchhhHHHHHHHHHHHHHHHhc-CCCCCHHHHHHHHHHH
Q 021791           17 INRIDMAERFLGEMIERGVEP-NVVTYNVLLNGVCRRASLHPNERFEKTIRNAEKVFDEMRVR-GIEPDVTSFSIVLHVY   94 (307)
Q Consensus        17 ~g~~~~a~~~~~~~~~~~~~p-~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~ll~~~   94 (307)
                      .+....+...+.......... ....+......+..          .+.+..+...+...... ........+......+
T Consensus        36 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  105 (291)
T COG0457          36 LGELAEALELLEEALELLPNSDLAGLLLLLALALLK----------LGRLEEALELLEKALELELLPNLAEALLNLGLLL  105 (291)
T ss_pred             HhhHHHHHHHHHHHHhcCccccchHHHHHHHHHHHH----------cccHHHHHHHHHHHHhhhhccchHHHHHHHHHHH
Confidence            456677777777776653221 34566666666666          56667777777666542 2344666777777788


Q ss_pred             HhcCCchhHHHHHHHHHHcCCCCchhhHHHHHH-HHHhcCChHHHHHHHHHHHhCCC--CCCHhhHHHHHHHHhcCCChh
Q 021791           95 SRAHKPQLSLDKLNFMKEKGICPTVATYTSVVK-CLCSCGRIEDAEELLGEMVRNGV--SPSAETYNCFFKEYRGRKDAN  171 (307)
Q Consensus        95 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~-~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~  171 (307)
                      ...++...+.+.+.........+ ......... .+...|+++.|...+++......  ......+......+...++.+
T Consensus       106 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  184 (291)
T COG0457         106 EALGKYEEALELLEKALALDPDP-DLAEALLALGALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYE  184 (291)
T ss_pred             HHHhhHHHHHHHHHHHHcCCCCc-chHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHH
Confidence            88888889999998888764443 222333333 78899999999999998865322  123444445555577888999


Q ss_pred             HHHHHHHHHhhcCCCCc-cHHHHHHHHHHHHhcCcHHHHHHHHHHHhhCCCCCCHHhHHHHHHHHHccCcHHHHHHHHHH
Q 021791          172 GAMKLYRQMKEDDLCVP-NIHTYNILIGMFMALNRMDMVREIWNHVKGSELGLDLDSYTMLIHGLCEKQKWKEACQYFVE  250 (307)
Q Consensus       172 ~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~  250 (307)
                      .+...+.......  .. ....+..+...+...++.+.+...+......... ....+..+...+...+..+.+...+.+
T Consensus       185 ~a~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~  261 (291)
T COG0457         185 EALELLEKALKLN--PDDDAEALLNLGLLYLKLGKYEEALEYYEKALELDPD-NAEALYNLALLLLELGRYEEALEALEK  261 (291)
T ss_pred             HHHHHHHHHHhhC--cccchHHHHHhhHHHHHcccHHHHHHHHHHHHhhCcc-cHHHHhhHHHHHHHcCCHHHHHHHHHH
Confidence            9999999998875  34 4677888888888899999999999988876322 244455555555567779999999988


Q ss_pred             HHHc
Q 021791          251 MIEK  254 (307)
Q Consensus       251 ~~~~  254 (307)
                      ....
T Consensus       262 ~~~~  265 (291)
T COG0457         262 ALEL  265 (291)
T ss_pred             HHHh
Confidence            8765

>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=94.80  E-value=1  Score=32.30  Aligned_cols=140  Identities=14%  Similarity=0.189  Sum_probs=90.7

Q ss_pred             chhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHh-hHHHHHHHHhcCCChhHHHHHHHHHhhcCCCCccHH-HHHH
Q 021791          118 TVATYTSVVKCLCSCGRIEDAEELLGEMVRNGVSPSAE-TYNCFFKEYRGRKDANGAMKLYRQMKEDDLCVPNIH-TYNI  195 (307)
Q Consensus       118 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-~~~~  195 (307)
                      +...|..-++ +.+.+..++|+.-|..+.+.|...-+. ............|+...|...|+++-.... .|-.. -...
T Consensus        58 sgd~flaAL~-lA~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~-~P~~~rd~AR  135 (221)
T COG4649          58 SGDAFLAALK-LAQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTS-IPQIGRDLAR  135 (221)
T ss_pred             chHHHHHHHH-HHHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCC-CcchhhHHHH
Confidence            4556666665 467788999999999998876542222 122233446778899999999999987754 33322 1222


Q ss_pred             H--HHHHHhcCcHHHHHHHHHHHhhCCCCCCHHhHHHHHHHHHccCcHHHHHHHHHHHHHcCCCCc
Q 021791          196 L--IGMFMALNRMDMVREIWNHVKGSELGLDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQ  259 (307)
Q Consensus       196 l--~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~  259 (307)
                      |  .-.+...|.++....-.+.+...+-+.-...-..|--+-.+.|++.+|...|..+.+....|-
T Consensus       136 lraa~lLvD~gsy~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~Da~apr  201 (221)
T COG4649         136 LRAAYLLVDNGSYDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIANDAQAPR  201 (221)
T ss_pred             HHHHHHHhccccHHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHccccCcH
Confidence            2  223456788888887777776654333333445566666788999999999988876544443

>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome

Probab=94.78  E-value=0.91  Score=33.06  Aligned_cols=59  Identities=14%  Similarity=0.103  Sum_probs=23.8

Q ss_pred             HHHHHHHHHhcCChHHHHHHHHHHHhCCCCCC--HhhHHHHHHHHhcCCChhHHHHHHHHH
Q 021791          122 YTSVVKCLCSCGRIEDAEELLGEMVRNGVSPS--AETYNCFFKEYRGRKDANGAMKLYRQM  180 (307)
Q Consensus       122 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~  180 (307)
                      +..+...|.+.|+.+.|.+.|.++.+....+.  ...+-.+|+.....+++..+...+.+.
T Consensus        39 ~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka   99 (177)
T PF10602_consen   39 LEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKA   99 (177)
T ss_pred             HHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence            33344444444444444444444443322221  122333444444444444444444333

This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.

>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length

Probab=94.74  E-value=2.1  Score=35.72  Aligned_cols=261  Identities=11%  Similarity=0.127  Sum_probs=150.3

Q ss_pred             HHhcCchhhHHHHHHHHHhcCC-CC---c-HHHHHHHHHHHHhhCCCCcchhhHHHHHHHHHHHHHHHhcCCCCCHHHHH
Q 021791           14 WCKINRIDMAERFLGEMIERGV-EP---N-VVTYNVLLNGVCRRASLHPNERFEKTIRNAEKVFDEMRVRGIEPDVTSFS   88 (307)
Q Consensus        14 ~~~~g~~~~a~~~~~~~~~~~~-~p---~-~~~~~~ll~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~   88 (307)
                      +-+.+++.+|.++|.++-+..- .|   . ...-+.++.+|..           .+++.....+....+.  .| ...|.
T Consensus        16 Lqkq~~~~esEkifskI~~e~~~~~f~lkeEvl~grilnAffl-----------~nld~Me~~l~~l~~~--~~-~s~~l   81 (549)
T PF07079_consen   16 LQKQKKFQESEKIFSKIYDEKESSPFLLKEEVLGGRILNAFFL-----------NNLDLMEKQLMELRQQ--FG-KSAYL   81 (549)
T ss_pred             HHHHhhhhHHHHHHHHHHHHhhcchHHHHHHHHhhHHHHHHHH-----------hhHHHHHHHHHHHHHh--cC-CchHH
Confidence            3467899999999999876521 11   1 2233456666664           5666666666666554  22 22333


Q ss_pred             HHHHH--HHhcCCchhHHHHHHHHHHc--CCCC------------chhhHHHHHHHHHhcCChHHHHHHHHHHHhC----
Q 021791           89 IVLHV--YSRAHKPQLSLDKLNFMKEK--GICP------------TVATYTSVVKCLCSCGRIEDAEELLGEMVRN----  148 (307)
Q Consensus        89 ~ll~~--~~~~~~~~~a~~~~~~~~~~--~~~~------------~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~----  148 (307)
                      .+..+  +.+.+.+.+|.+.+....+.  +..|            |-..=+..+.++...|++.++..+++++...    
T Consensus        82 ~LF~~L~~Y~~k~~~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a~sLIe~g~f~EgR~iLn~i~~~llkr  161 (549)
T PF07079_consen   82 PLFKALVAYKQKEYRKALQALSVWKEQIKGTESPWLDTNIQQLFSDFFLDEIEAHSLIETGRFSEGRAILNRIIERLLKR  161 (549)
T ss_pred             HHHHHHHHHHhhhHHHHHHHHHHHHhhhcccccchhhhhHHHHhhHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhhh
Confidence            34333  45778899999988777655  3222            2222356677888999999999999988765    


Q ss_pred             CCCCCHhhHHHHHHHHhcCC---------------ChhHHHHHHHHHhhcCC-----CCccHHHHHHHHHHHHhcC--cH
Q 021791          149 GVSPSAETYNCFFKEYRGRK---------------DANGAMKLYRQMKEDDL-----CVPNIHTYNILIGMFMALN--RM  206 (307)
Q Consensus       149 ~~~~~~~~~~~l~~~~~~~~---------------~~~~a~~~~~~~~~~~~-----~~~~~~~~~~l~~~~~~~~--~~  206 (307)
                      ....+..+|+.++-.+.+.-               .++.+.-...++.....     +.|.......+++...-.-  +.
T Consensus       162 E~~w~~d~yd~~vlmlsrSYfLEl~e~~s~dl~pdyYemilfY~kki~~~d~~~Y~k~~peeeL~s~imqhlfi~p~e~l  241 (549)
T PF07079_consen  162 ECEWNSDMYDRAVLMLSRSYFLELKESMSSDLYPDYYEMILFYLKKIHAFDQRPYEKFIPEEELFSTIMQHLFIVPKERL  241 (549)
T ss_pred             hhcccHHHHHHHHHHHhHHHHHHHHHhcccccChHHHHHHHHHHHHHHHHhhchHHhhCcHHHHHHHHHHHHHhCCHhhc
Confidence            33478889988665554431               11223333333332211     1344444444444433221  22


Q ss_pred             HHHHHHHHHHhhCCCCCCHH-hHHHHHHHHHccCcHHHHHHHHHHHHHcCCCC----cHhhHHHHHHHHhhchhHHHHHH
Q 021791          207 DMVREIWNHVKGSELGLDLD-SYTMLIHGLCEKQKWKEACQYFVEMIEKGLLP----QKVTFETLYRGLIQSDMLRTWRR  281 (307)
Q Consensus       207 ~~a~~~~~~~~~~~~~~~~~-~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p----~~~~~~~l~~~~~~~g~~~~a~~  281 (307)
                      .--.++++.....-+.|+.. ....++..+.+  +.+++..+.+.+....+.+    =..+|..++....+.++...|.+
T Consensus       242 ~~~mq~l~~We~~yv~p~~~LVi~~L~~~f~~--~~e~~~~~ce~ia~~~i~~Lke~li~~F~~~Ls~~Vk~~~T~~a~q  319 (549)
T PF07079_consen  242 PPLMQILENWENFYVHPNYDLVIEPLKQQFMS--DPEQVGHFCEAIASSKIEKLKEELIDRFGNLLSFKVKQVQTEEAKQ  319 (549)
T ss_pred             cHHHHHHHHHHhhccCCchhHHHHHHHHHHhc--ChHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence            22233333333333455533 34445555554  5566666665554432211    12468889999999999999999


Q ss_pred             HHHHhhhcC
Q 021791          282 LKKKLDEES  290 (307)
Q Consensus       282 ~~~~~~~~~  290 (307)
                      .+..+.-..
T Consensus       320 ~l~lL~~ld  328 (549)
T PF07079_consen  320 YLALLKILD  328 (549)
T ss_pred             HHHHHHhcC
Confidence            988775443

Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.

>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=94.72  E-value=2  Score=35.36  Aligned_cols=83  Identities=8%  Similarity=-0.065  Sum_probs=40.2

Q ss_pred             hcCcHHHHHHHHHHHhhC---CCCCCHHhHHHHHHHHHccCcHHHHHHHHHHHHHcCCCCcHhhHHHH---HHHHhhchh
Q 021791          202 ALNRMDMVREIWNHVKGS---ELGLDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETL---YRGLIQSDM  275 (307)
Q Consensus       202 ~~~~~~~a~~~~~~~~~~---~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l---~~~~~~~g~  275 (307)
                      +.|++..|.+.+.+....   +..|+...|.....+..+.|+.++|+.-.++..+-    |+.-...+   ..++...++
T Consensus       261 k~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~i----D~syikall~ra~c~l~le~  336 (486)
T KOG0550|consen  261 KNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKI----DSSYIKALLRRANCHLALEK  336 (486)
T ss_pred             hccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhc----CHHHHHHHHHHHHHHHHHHH
Confidence            455566666666555543   22233444544555555566666666655555432    22222222   223444555


Q ss_pred             HHHHHHHHHHhhh
Q 021791          276 LRTWRRLKKKLDE  288 (307)
Q Consensus       276 ~~~a~~~~~~~~~  288 (307)
                      +++|.+-+++..+
T Consensus       337 ~e~AV~d~~~a~q  349 (486)
T KOG0550|consen  337 WEEAVEDYEKAMQ  349 (486)
T ss_pred             HHHHHHHHHHHHh
Confidence            5555555555433

>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A

Probab=94.67  E-value=0.1  Score=26.38  Aligned_cols=25  Identities=12%  Similarity=0.251  Sum_probs=15.5

Q ss_pred             HHHHHHHHHccCcHHHHHHHHHHHH
Q 021791          228 YTMLIHGLCEKQKWKEACQYFVEMI  252 (307)
Q Consensus       228 ~~~li~~~~~~g~~~~a~~~~~~~~  252 (307)
                      |..|...|.+.|++++|+.++++.+
T Consensus         2 l~~Lg~~~~~~g~~~~Ai~~y~~aL   26 (36)
T PF13176_consen    2 LNNLGRIYRQQGDYEKAIEYYEQAL   26 (36)
T ss_dssp             HHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            5556666666667777766666643

>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]

Probab=94.65  E-value=1.9  Score=34.86  Aligned_cols=229  Identities=9%  Similarity=-0.006  Sum_probs=130.5

Q ss_pred             HHhcCchhhHHHHHHHHHhc--CCCCcHHHHHHHHHHHHhhCCCCcchhhHHHHHHHHHHH----HHHHhcC-CCCCHHH
Q 021791           14 WCKINRIDMAERFLGEMIER--GVEPNVVTYNVLLNGVCRRASLHPNERFEKTIRNAEKVF----DEMRVRG-IEPDVTS   86 (307)
Q Consensus        14 ~~~~g~~~~a~~~~~~~~~~--~~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~a~~~~----~~~~~~~-~~~~~~~   86 (307)
                      +....+.++|+..|..-..+  +..-.-.++..+..+.++          .+++++++..-    +-..+.. -..--..
T Consensus        16 Ly~s~~~~~al~~w~~~L~~l~~~~~Rf~~lG~l~~a~s~----------~g~y~~mL~~a~sqi~~a~~~~ds~~~~ea   85 (518)
T KOG1941|consen   16 LYQSNQTEKALQVWTKVLEKLSDLMGRFRVLGCLVTAHSE----------MGRYKEMLKFAVSQIDTARELEDSDFLLEA   85 (518)
T ss_pred             HhcCchHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhh----------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33566778888887776554  111123455666666666          55665554332    1111110 0111234


Q ss_pred             HHHHHHHHHhcCCchhHHHHHHHHHHc-CCCC---chhhHHHHHHHHHhcCChHHHHHHHHHHHhCCC-----CCCHhhH
Q 021791           87 FSIVLHVYSRAHKPQLSLDKLNFMKEK-GICP---TVATYTSVVKCLCSCGRIEDAEELLGEMVRNGV-----SPSAETY  157 (307)
Q Consensus        87 ~~~ll~~~~~~~~~~~a~~~~~~~~~~-~~~~---~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~-----~~~~~~~  157 (307)
                      |..+.+++-+.-++.+++.+-..-... |..|   ......++..++...+.++++++.|+...+...     .....++
T Consensus        86 ~lnlar~~e~l~~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvc  165 (518)
T KOG1941|consen   86 YLNLARSNEKLCEFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVC  165 (518)
T ss_pred             HHHHHHHHHHHHHhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehh
Confidence            556666666666677777666555433 2222   123345567777888889999999988765311     1223567


Q ss_pred             HHHHHHHhcCCChhHHHHHHHHHhhcCC-C-CccHH------HHHHHHHHHHhcCcHHHHHHHHHHHhh----CCCCC-C
Q 021791          158 NCFFKEYRGRKDANGAMKLYRQMKEDDL-C-VPNIH------TYNILIGMFMALNRMDMVREIWNHVKG----SELGL-D  224 (307)
Q Consensus       158 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~-~~~~~------~~~~l~~~~~~~~~~~~a~~~~~~~~~----~~~~~-~  224 (307)
                      -.+-..|.+..++++|.-+.....+.-. . ..|..      ....+.-++...|.+..|.+.-++..+    .|-.+ .
T Consensus       166 v~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~  245 (518)
T KOG1941|consen  166 VSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQ  245 (518)
T ss_pred             hhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHH
Confidence            7888888899999888777665543210 0 11211      122334455567777777766665443    34222 1


Q ss_pred             HHhHHHHHHHHHccCcHHHHHHHHHHHH
Q 021791          225 LDSYTMLIHGLCEKQKWKEACQYFVEMI  252 (307)
Q Consensus       225 ~~~~~~li~~~~~~g~~~~a~~~~~~~~  252 (307)
                      ......+.+.|...|+.+.|+.-|+...
T Consensus       246 arc~~~~aDIyR~~gd~e~af~rYe~Am  273 (518)
T KOG1941|consen  246 ARCLLCFADIYRSRGDLERAFRRYEQAM  273 (518)
T ss_pred             HHHHHHHHHHHHhcccHhHHHHHHHHHH
Confidence            2334566778888898888887777653

>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []

Probab=94.46  E-value=1.9  Score=34.06  Aligned_cols=234  Identities=12%  Similarity=0.115  Sum_probs=122.1

Q ss_pred             HhcCchhhHHHHHHHHHhcCCCCcHHHHHHHHHHHHhhCCC-----CcchhhHHHHHHHHHHHHHHHh-cCCCCCH----
Q 021791           15 CKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASL-----HPNERFEKTIRNAEKVFDEMRV-RGIEPDV----   84 (307)
Q Consensus        15 ~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~-----~~~~~~~~~~~~a~~~~~~~~~-~~~~~~~----   84 (307)
                      .+.|+++.|..++.+........++.....|-..|...|.-     .........+++|.++++...+ ....|+.    
T Consensus         4 ~~~~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~elr   83 (278)
T PF08631_consen    4 WKQGDLDLAEHMYSKAKDLLNSLDPDMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSELR   83 (278)
T ss_pred             hhhCCHHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHHH
Confidence            46899999999999987642122333333333333332210     0111113334555555544111 1223333    


Q ss_pred             -HHHHHHHHHHHhcCCch---hHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHhhHHHH
Q 021791           85 -TSFSIVLHVYSRAHKPQ---LSLDKLNFMKEKGICPTVATYTSVVKCLCSCGRIEDAEELLGEMVRNGVSPSAETYNCF  160 (307)
Q Consensus        85 -~~~~~ll~~~~~~~~~~---~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l  160 (307)
                       .++..++.++...+..+   +|..+++.+...... .+.++..-+..+.+.++.+.+.+++.+|...-. .....+..+
T Consensus        84 ~~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~~~-~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~~~-~~e~~~~~~  161 (278)
T PF08631_consen   84 LSILRLLANAYLEWDTYESVEKALNALRLLESEYGN-KPEVFLLKLEILLKSFDEEEYEEILMRMIRSVD-HSESNFDSI  161 (278)
T ss_pred             HHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhCCC-CcHHHHHHHHHHhccCChhHHHHHHHHHHHhcc-cccchHHHH
Confidence             46777888888877755   455666666544322 355666667777778999999999999997622 133445555


Q ss_pred             HHHH---hcCCChhHHHHHHHHHhhcCCCCccHH-HHHH-HH-HH--HHhcCc------HHHHHHHHHHHhh-CCCCCCH
Q 021791          161 FKEY---RGRKDANGAMKLYRQMKEDDLCVPNIH-TYNI-LI-GM--FMALNR------MDMVREIWNHVKG-SELGLDL  225 (307)
Q Consensus       161 ~~~~---~~~~~~~~a~~~~~~~~~~~~~~~~~~-~~~~-l~-~~--~~~~~~------~~~a~~~~~~~~~-~~~~~~~  225 (307)
                      +..+   .... ...+...+..+..... .|... .... ++ ..  ..+.++      .+....+++.+.. .+.+.+.
T Consensus       162 l~~i~~l~~~~-~~~a~~~ld~~l~~r~-~~~~~~~~e~~vl~~~~~~~~~~~~~~~~~i~~l~~~~~~v~~~~~~~ls~  239 (278)
T PF08631_consen  162 LHHIKQLAEKS-PELAAFCLDYLLLNRF-KSSEDQWLEKLVLTRVLLTTQSKDLSSSEKIESLEELLSIVEHSLGKQLSA  239 (278)
T ss_pred             HHHHHHHHhhC-cHHHHHHHHHHHHHHh-CCChhHHHHHHHHHHHHHHcCCccccchhHHHHHHHHHHHHHHHhcCCCCH
Confidence            5444   4433 3455555555544432 33332 1111 11 11  112111      4444445553332 2223344


Q ss_pred             HhHHHHH-------HHHHccCcHHHHHHHHHHHH
Q 021791          226 DSYTMLI-------HGLCEKQKWKEACQYFVEMI  252 (307)
Q Consensus       226 ~~~~~li-------~~~~~~g~~~~a~~~~~~~~  252 (307)
                      .+-..+.       ..+.+.++++.|...|+-..
T Consensus       240 ~~~~a~~~LLW~~~~~~~~~k~y~~A~~w~~~al  273 (278)
T PF08631_consen  240 EAASAIHTLLWNKGKKHYKAKNYDEAIEWYELAL  273 (278)
T ss_pred             HHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHH
Confidence            4433322       33456789999999998544

It is also involved in sporulation [].

>COG4105 ComL DNA uptake lipoprotein [General function prediction only]

Probab=94.28  E-value=1.9  Score=33.12  Aligned_cols=69  Identities=16%  Similarity=0.092  Sum_probs=45.0

Q ss_pred             HHHHHHHHHHHHHHHhcC--CCCCHHHHHHHHHHHHhcCCchhHHHHHHHHHHcCCCCchhhHHHHHHHHH
Q 021791           62 EKTIRNAEKVFDEMRVRG--IEPDVTSFSIVLHVYSRAHKPQLSLDKLNFMKEKGICPTVATYTSVVKCLC  130 (307)
Q Consensus        62 ~~~~~~a~~~~~~~~~~~--~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~  130 (307)
                      .|++++|.+.|+.+....  -+-...+-..++.++.+.++.+.|...+++..+.-......-|..-|.+++
T Consensus        47 ~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~~YlkgLs  117 (254)
T COG4105          47 KGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYAYYLKGLS  117 (254)
T ss_pred             cCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHHHHHHHHH
Confidence            577888888888887652  122345566677778888888888888888776633333334444455444

>KOG4555 consensus TPR repeat-containing protein [Function unknown]

Probab=94.18  E-value=1.2  Score=30.35  Aligned_cols=91  Identities=18%  Similarity=0.139  Sum_probs=58.2

Q ss_pred             HHHhcCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHhcCCChhHHHHHHHHHhhcCCCCccH---HHHHHHHHHHHhcC
Q 021791          128 CLCSCGRIEDAEELLGEMVRNGVSPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDDLCVPNI---HTYNILIGMFMALN  204 (307)
Q Consensus       128 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~  204 (307)
                      +.+..|+.+.|++.|.+....-++ ....||.-.+++.-.|+.++|++=+++..+... ..+.   ..|..-...|...|
T Consensus        52 alaE~g~Ld~AlE~F~qal~l~P~-raSayNNRAQa~RLq~~~e~ALdDLn~AleLag-~~trtacqa~vQRg~lyRl~g  129 (175)
T KOG4555|consen   52 ALAEAGDLDGALELFGQALCLAPE-RASAYNNRAQALRLQGDDEEALDDLNKALELAG-DQTRTACQAFVQRGLLYRLLG  129 (175)
T ss_pred             HHHhccchHHHHHHHHHHHHhccc-chHhhccHHHHHHHcCChHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHHHHhC
Confidence            456677777777777777665322 566777777777777777777777777666543 2222   12333334456677


Q ss_pred             cHHHHHHHHHHHhhCC
Q 021791          205 RMDMVREIWNHVKGSE  220 (307)
Q Consensus       205 ~~~~a~~~~~~~~~~~  220 (307)
                      +.+.|..=|+..-+.|
T Consensus       130 ~dd~AR~DFe~AA~LG  145 (175)
T KOG4555|consen  130 NDDAARADFEAAAQLG  145 (175)
T ss_pred             chHHHHHhHHHHHHhC
Confidence            7777777777766655

>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]

Probab=94.11  E-value=5.3  Score=37.70  Aligned_cols=117  Identities=15%  Similarity=0.118  Sum_probs=71.3

Q ss_pred             CCchhhHHHHH----HHHHhcCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHhcCCChhHHHHHHHHHhhcCCCCccHH
Q 021791          116 CPTVATYTSVV----KCLCSCGRIEDAEELLGEMVRNGVSPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDDLCVPNIH  191 (307)
Q Consensus       116 ~~~~~~~~~ll----~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~  191 (307)
                      .|+...+..+.    ..+.....+++|--.|+..-+.         ...+.+|..+|+|.+|+.+..++.....  --..
T Consensus       932 ~~~~e~~k~i~~~ya~hL~~~~~~~~Aal~Ye~~Gkl---------ekAl~a~~~~~dWr~~l~~a~ql~~~~d--e~~~ 1000 (1265)
T KOG1920|consen  932 KPDSEKQKVIYEAYADHLREELMSDEAALMYERCGKL---------EKALKAYKECGDWREALSLAAQLSEGKD--ELVI 1000 (1265)
T ss_pred             ccCHHHHHHHHHHHHHHHHHhccccHHHHHHHHhccH---------HHHHHHHHHhccHHHHHHHHHhhcCCHH--HHHH
Confidence            34554444444    4445566777777766655321         2356778888899998888887754321  1111


Q ss_pred             HHHHHHHHHHhcCcHHHHHHHHHHHhhCCCCCCHHhHHHHHHHHHccCcHHHHHHHHHHH
Q 021791          192 TYNILIGMFMALNRMDMVREIWNHVKGSELGLDLDSYTMLIHGLCEKQKWKEACQYFVEM  251 (307)
Q Consensus       192 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~  251 (307)
                      +-..|+.-+...++.-+|-++..+....        ....+..|++...|++|+.+....
T Consensus      1001 ~a~~L~s~L~e~~kh~eAa~il~e~~sd--------~~~av~ll~ka~~~~eAlrva~~~ 1052 (1265)
T KOG1920|consen 1001 LAEELVSRLVEQRKHYEAAKILLEYLSD--------PEEAVALLCKAKEWEEALRVASKA 1052 (1265)
T ss_pred             HHHHHHHHHHHcccchhHHHHHHHHhcC--------HHHHHHHHhhHhHHHHHHHHHHhc
Confidence            2256777777888888888887776653        123344555666677777765544

>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=93.98  E-value=0.044  Score=38.31  Aligned_cols=84  Identities=12%  Similarity=0.128  Sum_probs=44.7

Q ss_pred             HHHHHHhcCCchhHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHhcCCC
Q 021791           90 VLHVYSRAHKPQLSLDKLNFMKEKGICPTVATYTSVVKCLCSCGRIEDAEELLGEMVRNGVSPSAETYNCFFKEYRGRKD  169 (307)
Q Consensus        90 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~  169 (307)
                      +++.+.+.+.++....+++.+...+...+....+.++..|++.++.++..++++..       +..-...++..|.+.|.
T Consensus        13 vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~~-------~~yd~~~~~~~c~~~~l   85 (143)
T PF00637_consen   13 VISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLKTS-------NNYDLDKALRLCEKHGL   85 (143)
T ss_dssp             CHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTTSS-------SSS-CTHHHHHHHTTTS
T ss_pred             HHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcccc-------cccCHHHHHHHHHhcch
Confidence            44555556666666666666665554445666666777777666656665555511       11222334444555555


Q ss_pred             hhHHHHHHHHH
Q 021791          170 ANGAMKLYRQM  180 (307)
Q Consensus       170 ~~~a~~~~~~~  180 (307)
                      ++++.-++.++
T Consensus        86 ~~~a~~Ly~~~   96 (143)
T PF00637_consen   86 YEEAVYLYSKL   96 (143)
T ss_dssp             HHHHHHHHHCC
T ss_pred             HHHHHHHHHHc
Confidence            55555554443

These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.

>PF13512 TPR_18: Tetratricopeptide repeat

Probab=93.88  E-value=1.5  Score=30.44  Aligned_cols=54  Identities=6%  Similarity=-0.057  Sum_probs=22.7

Q ss_pred             cCCChhHHHHHHHHHhhcCCC-CccHHHHHHHHHHHHhcCcHHHHHHHHHHHhhC
Q 021791          166 GRKDANGAMKLYRQMKEDDLC-VPNIHTYNILIGMFMALNRMDMVREIWNHVKGS  219 (307)
Q Consensus       166 ~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~  219 (307)
                      +.|++++|.+.|+.+...-.. +-...+--.|+.+|.+.+++++|...+++..+.
T Consensus        22 ~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirL   76 (142)
T PF13512_consen   22 QKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRL   76 (142)
T ss_pred             HhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Confidence            444444444444444443210 111223334444444444444444444444443

>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]

Probab=93.73  E-value=2.4  Score=32.38  Aligned_cols=205  Identities=12%  Similarity=0.092  Sum_probs=104.4

Q ss_pred             HHHHHHHHHHhcCchhhHHHHHHHHHhcCCCCcHHHHHHHHHHHHhhCCCCcchhhHHHHHHHHHHHHHHHhcCCCCCHH
Q 021791            6 MYTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPNERFEKTIRNAEKVFDEMRVRGIEPDVT   85 (307)
Q Consensus         6 ~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~   85 (307)
                      .|..-..+|...+++++|...+.+..+. .+-+...|.    +             .+.+++|..+.+++.+.  +--..
T Consensus        33 ~yekAAvafRnAk~feKakdcLlkA~~~-yEnnrslfh----A-------------AKayEqaamLake~~kl--sEvvd   92 (308)
T KOG1585|consen   33 LYEKAAVAFRNAKKFEKAKDCLLKASKG-YENNRSLFH----A-------------AKAYEQAAMLAKELSKL--SEVVD   92 (308)
T ss_pred             HHHHHHHHHHhhccHHHHHHHHHHHHHH-HHhcccHHH----H-------------HHHHHHHHHHHHHHHHh--HHHHH
Confidence            4445555666666677766665555421 111111111    1             34455666666666544  21233


Q ss_pred             HHHHHHHHHHhcCCchhHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCChHHHHHHHHHHHhC---CCC--CCHhhHHHH
Q 021791           86 SFSIVLHVYSRAHKPQLSLDKLNFMKEKGICPTVATYTSVVKCLCSCGRIEDAEELLGEMVRN---GVS--PSAETYNCF  160 (307)
Q Consensus        86 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~---~~~--~~~~~~~~l  160 (307)
                      .|+-....|...|.++.|-..+++.-+.                ...-++++|+++|++....   +-+  .-...+..+
T Consensus        93 l~eKAs~lY~E~GspdtAAmaleKAak~----------------lenv~Pd~AlqlYqralavve~~dr~~ma~el~gk~  156 (308)
T KOG1585|consen   93 LYEKASELYVECGSPDTAAMALEKAAKA----------------LENVKPDDALQLYQRALAVVEEDDRDQMAFELYGKC  156 (308)
T ss_pred             HHHHHHHHHHHhCCcchHHHHHHHHHHH----------------hhcCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHh
Confidence            4556666677777776666555544321                2233445555555543321   110  112233444


Q ss_pred             HHHHhcCCChhHHHHHHHHHhhc----CCCCcc-HHHHHHHHHHHHhcCcHHHHHHHHHHHhhCC---CCCCHHhHHHHH
Q 021791          161 FKEYRGRKDANGAMKLYRQMKED----DLCVPN-IHTYNILIGMFMALNRMDMVREIWNHVKGSE---LGLDLDSYTMLI  232 (307)
Q Consensus       161 ~~~~~~~~~~~~a~~~~~~~~~~----~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~~~~~li  232 (307)
                      -+.+.+...+.+|-..+.+-...    .. .++ -..|...|-.+.-..++..|.+.++...+.+   -+-+..+...|+
T Consensus       157 sr~lVrl~kf~Eaa~a~lKe~~~~~~~~~-y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL  235 (308)
T KOG1585|consen  157 SRVLVRLEKFTEAATAFLKEGVAADKCDA-YNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLL  235 (308)
T ss_pred             hhHhhhhHHhhHHHHHHHHhhhHHHHHhh-cccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHHHHH
Confidence            45566666666555444332111    10 122 2334555556666778888888888754432   223556777788


Q ss_pred             HHHHccCcHHHHHHHH
Q 021791          233 HGLCEKQKWKEACQYF  248 (307)
Q Consensus       233 ~~~~~~g~~~~a~~~~  248 (307)
                      .+|- .|+.+++..++
T Consensus       236 ~ayd-~gD~E~~~kvl  250 (308)
T KOG1585|consen  236 TAYD-EGDIEEIKKVL  250 (308)
T ss_pred             HHhc-cCCHHHHHHHH
Confidence            7775 56777666654

>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome

Probab=93.67  E-value=2  Score=31.31  Aligned_cols=98  Identities=11%  Similarity=0.108  Sum_probs=68.0

Q ss_pred             HHHHHHHHHHHhcCCchhHHHHHHHHHHcCCCCc--hhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCC-CHhhHHH--
Q 021791           85 TSFSIVLHVYSRAHKPQLSLDKLNFMKEKGICPT--VATYTSVVKCLCSCGRIEDAEELLGEMVRNGVSP-SAETYNC--  159 (307)
Q Consensus        85 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~--  159 (307)
                      ..+..+...|.+.|+.+.|.+.|.++.+....+.  ...+-.+|....-.+++..+.....+....--.+ |...-+.  
T Consensus        37 ~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrlk  116 (177)
T PF10602_consen   37 MALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRLK  116 (177)
T ss_pred             HHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHHH
Confidence            4688999999999999999999999988754433  3456778888899999999998888776532121 1111111  


Q ss_pred             HH--HHHhcCCChhHHHHHHHHHhh
Q 021791          160 FF--KEYRGRKDANGAMKLYRQMKE  182 (307)
Q Consensus       160 l~--~~~~~~~~~~~a~~~~~~~~~  182 (307)
                      ..  -.+...+++..|-+.|-....
T Consensus       117 ~~~gL~~l~~r~f~~AA~~fl~~~~  141 (177)
T PF10602_consen  117 VYEGLANLAQRDFKEAAELFLDSLS  141 (177)
T ss_pred             HHHHHHHHHhchHHHHHHHHHccCc
Confidence            11  123456788887777766643

This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.

>KOG2610 consensus Uncharacterized conserved protein [Function unknown]

Probab=93.66  E-value=3.1  Score=33.42  Aligned_cols=151  Identities=5%  Similarity=-0.023  Sum_probs=71.0

Q ss_pred             cCchhhHHHHHHHHHhcCCCCcHHHHHHHHHHHHhhCCCCcchhhHHHHHHHHHHHHHHHhc---CCCCCHHHHHHHHHH
Q 021791           17 INRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPNERFEKTIRNAEKVFDEMRVR---GIEPDVTSFSIVLHV   93 (307)
Q Consensus        17 ~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~~~~~ll~~   93 (307)
                      .|++.+|-..++++++. .+.|...+...=.+|..          .|+.......+++....   +++-...+-..+.-+
T Consensus       116 ~g~~h~a~~~wdklL~d-~PtDlla~kfsh~a~fy----------~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFg  184 (491)
T KOG2610|consen  116 RGKHHEAAIEWDKLLDD-YPTDLLAVKFSHDAHFY----------NGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFG  184 (491)
T ss_pred             cccccHHHHHHHHHHHh-CchhhhhhhhhhhHHHh----------ccchhhhhhHHHHhccccCCCCcHHHHHHHHHHhh
Confidence            34455555555555543 33344455555555555          33344444444444332   111122222333334


Q ss_pred             HHhcCCchhHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCChHHHHHHHHHHHhC---CCCCCHhhHHHHHHHHhcCCCh
Q 021791           94 YSRAHKPQLSLDKLNFMKEKGICPTVATYTSVVKCLCSCGRIEDAEELLGEMVRN---GVSPSAETYNCFFKEYRGRKDA  170 (307)
Q Consensus        94 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~~~~~l~~~~~~~~~~  170 (307)
                      +...|-+++|++.-++..+.+. .|......+...+-..|++.++.+.+.+-...   +--.-.+-|-...-.+...+.+
T Consensus       185 L~E~g~y~dAEk~A~ralqiN~-~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aey  263 (491)
T KOG2610|consen  185 LEECGIYDDAEKQADRALQINR-FDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEY  263 (491)
T ss_pred             HHHhccchhHHHHHHhhccCCC-cchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccch
Confidence            4456666666666666655542 25555555666666666666666655443221   0000011121222234455666


Q ss_pred             hHHHHHHHH
Q 021791          171 NGAMKLYRQ  179 (307)
Q Consensus       171 ~~a~~~~~~  179 (307)
                      +.|+.+|+.
T Consensus       264 e~aleIyD~  272 (491)
T KOG2610|consen  264 EKALEIYDR  272 (491)
T ss_pred             hHHHHHHHH
Confidence            777776654

>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va

Probab=93.66  E-value=0.65  Score=29.52  Aligned_cols=40  Identities=15%  Similarity=0.287  Sum_probs=17.2

Q ss_pred             HHHHHhCCCCCCHhhHHHHHHHHhcCCChhHHHHHHHHHh
Q 021791          142 LGEMVRNGVSPSAETYNCFFKEYRGRKDANGAMKLYRQMK  181 (307)
Q Consensus       142 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~  181 (307)
                      ++.+....+.|++....+.+++|.+.+++..|.++|+.+.
T Consensus        30 mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK   69 (103)
T cd00923          30 LNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIK   69 (103)
T ss_pred             HHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence            3333333444444444444444444444444444444443

Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.

>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=93.47  E-value=3.8  Score=33.88  Aligned_cols=153  Identities=9%  Similarity=-0.025  Sum_probs=100.5

Q ss_pred             HHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCchhHHHHHHHHHHcCCCCchhh-------------HHHHHHH
Q 021791           62 EKTIRNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHKPQLSLDKLNFMKEKGICPTVAT-------------YTSVVKC  128 (307)
Q Consensus        62 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-------------~~~ll~~  128 (307)
                      .+++++|.+.--...+.. ..+....-.--.++...++.+.+...|++..+.+  |+...             +..=.+-
T Consensus       182 ~~~~~~a~~ea~~ilkld-~~n~~al~vrg~~~yy~~~~~ka~~hf~qal~ld--pdh~~sk~~~~~~k~le~~k~~gN~  258 (486)
T KOG0550|consen  182 LGDYDEAQSEAIDILKLD-ATNAEALYVRGLCLYYNDNADKAINHFQQALRLD--PDHQKSKSASMMPKKLEVKKERGND  258 (486)
T ss_pred             cccchhHHHHHHHHHhcc-cchhHHHHhcccccccccchHHHHHHHhhhhccC--hhhhhHHhHhhhHHHHHHHHhhhhh
Confidence            566667766666555542 1122222222234445677888888888887764  33222             2222334


Q ss_pred             HHhcCChHHHHHHHHHHHhC---CCCCCHhhHHHHHHHHhcCCChhHHHHHHHHHhhcCCCCccHHHHHHHHHHHHhcCc
Q 021791          129 LCSCGRIEDAEELLGEMVRN---GVSPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDDLCVPNIHTYNILIGMFMALNR  205 (307)
Q Consensus       129 ~~~~~~~~~a~~~~~~~~~~---~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~  205 (307)
                      ..+.|++..|.+.|.+.+..   +..|+...|.....+..+.|+.++|+.--++....+  +.=...|..-..++...++
T Consensus       259 ~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD--~syikall~ra~c~l~le~  336 (486)
T KOG0550|consen  259 AFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKID--SSYIKALLRRANCHLALEK  336 (486)
T ss_pred             HhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcC--HHHHHHHHHHHHHHHHHHH
Confidence            56889999999999998875   345666778777888899999999999888887653  1222333444455667789


Q ss_pred             HHHHHHHHHHHhhC
Q 021791          206 MDMVREIWNHVKGS  219 (307)
Q Consensus       206 ~~~a~~~~~~~~~~  219 (307)
                      |++|.+-++...+.
T Consensus       337 ~e~AV~d~~~a~q~  350 (486)
T KOG0550|consen  337 WEEAVEDYEKAMQL  350 (486)
T ss_pred             HHHHHHHHHHHHhh
Confidence            99999988887765

>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]

Probab=93.46  E-value=3  Score=32.74  Aligned_cols=76  Identities=12%  Similarity=0.172  Sum_probs=42.6

Q ss_pred             HHHHHHHHHhcCCchhHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCChHHHHHHHHHHHh-----CCCCCCHhhHHHHH
Q 021791           87 FSIVLHVYSRAHKPQLSLDKLNFMKEKGICPTVATYTSVVKCLCSCGRIEDAEELLGEMVR-----NGVSPSAETYNCFF  161 (307)
Q Consensus        87 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~-----~~~~~~~~~~~~l~  161 (307)
                      +..++..+...|+.+.+...++++..... .+...|..++.+|.+.|+...|+..|+++.+     .|+.|...+.....
T Consensus       156 l~~lae~~~~~~~~~~~~~~l~~Li~~dp-~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~~y~  234 (280)
T COG3629         156 LTKLAEALIACGRADAVIEHLERLIELDP-YDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRALYE  234 (280)
T ss_pred             HHHHHHHHHhcccHHHHHHHHHHHHhcCc-cchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHHHHH
Confidence            34445555555666666666666665543 2555666666666666666666666665543     25555555544444


Q ss_pred             HH
Q 021791          162 KE  163 (307)
Q Consensus       162 ~~  163 (307)
                      ..
T Consensus       235 ~~  236 (280)
T COG3629         235 EI  236 (280)
T ss_pred             HH
Confidence            33

>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed

Probab=93.34  E-value=1.2  Score=32.76  Aligned_cols=80  Identities=15%  Similarity=0.059  Sum_probs=61.4

Q ss_pred             HHHhcCCchhHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCChHHHHHHHHHHHhC---CCCCCHhhHHHHHHHHhcCCC
Q 021791           93 VYSRAHKPQLSLDKLNFMKEKGICPTVATYTSVVKCLCSCGRIEDAEELLGEMVRN---GVSPSAETYNCFFKEYRGRKD  169 (307)
Q Consensus        93 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~~~~~l~~~~~~~~~  169 (307)
                      ..++.|+ +.|.+.|-.+...+.--++.....+...|. ..+.+++..++....+.   +-.+|+..+.+|+..+.+.++
T Consensus       116 ~Wsr~~d-~~A~~~fL~~E~~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~  193 (203)
T PF11207_consen  116 HWSRFGD-QEALRRFLQLEGTPELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKN  193 (203)
T ss_pred             HhhccCc-HHHHHHHHHHcCCCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcc
Confidence            3455565 678888888888776556666556666555 67899999999887753   446789999999999999999


Q ss_pred             hhHHH
Q 021791          170 ANGAM  174 (307)
Q Consensus       170 ~~~a~  174 (307)
                      ++.|.
T Consensus       194 ~e~AY  198 (203)
T PF11207_consen  194 YEQAY  198 (203)
T ss_pred             hhhhh
Confidence            99875

>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]

Probab=93.18  E-value=3  Score=31.87  Aligned_cols=146  Identities=11%  Similarity=0.138  Sum_probs=82.2

Q ss_pred             HHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHhcCCChhHHHHHHHHHhhc----CCCCccHHHHHHHH
Q 021791          122 YTSVVKCLCSCGRIEDAEELLGEMVRNGVSPSAETYNCFFKEYRGRKDANGAMKLYRQMKED----DLCVPNIHTYNILI  197 (307)
Q Consensus       122 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~~~~~~~~~l~  197 (307)
                      |+.-...|..+|.++.|-..+++.-+                .....++++|++++.+....    +....-...+....
T Consensus        94 ~eKAs~lY~E~GspdtAAmaleKAak----------------~lenv~Pd~AlqlYqralavve~~dr~~ma~el~gk~s  157 (308)
T KOG1585|consen   94 YEKASELYVECGSPDTAAMALEKAAK----------------ALENVKPDDALQLYQRALAVVEEDDRDQMAFELYGKCS  157 (308)
T ss_pred             HHHHHHHHHHhCCcchHHHHHHHHHH----------------HhhcCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHhh
Confidence            44444555566655555555544332                12344556666666554321    11012233455566


Q ss_pred             HHHHhcCcHHHHHHHHHHHhh----CCCCCC-HHhHHHHHHHHHccCcHHHHHHHHHHHHHcCC---CCcHhhHHHHHHH
Q 021791          198 GMFMALNRMDMVREIWNHVKG----SELGLD-LDSYTMLIHGLCEKQKWKEACQYFVEMIEKGL---LPQKVTFETLYRG  269 (307)
Q Consensus       198 ~~~~~~~~~~~a~~~~~~~~~----~~~~~~-~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~---~p~~~~~~~l~~~  269 (307)
                      +.+.+...+++|-..+.+-..    ..--++ ...|-..|-.+....++..|...++.--+-+-   .-+..+...|+.+
T Consensus       158 r~lVrl~kf~Eaa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL~a  237 (308)
T KOG1585|consen  158 RVLVRLEKFTEAATAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLLTA  237 (308)
T ss_pred             hHhhhhHHhhHHHHHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHHHHHHH
Confidence            667777777777665543221    111122 23455566667777899999999998654421   2345678888877


Q ss_pred             HhhchhHHHHHHHHH
Q 021791          270 LIQSDMLRTWRRLKK  284 (307)
Q Consensus       270 ~~~~g~~~~a~~~~~  284 (307)
                      | ..|+.+++..++.
T Consensus       238 y-d~gD~E~~~kvl~  251 (308)
T KOG1585|consen  238 Y-DEGDIEEIKKVLS  251 (308)
T ss_pred             h-ccCCHHHHHHHHc
Confidence            6 4677788777653

>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va

Probab=93.16  E-value=0.98  Score=28.74  Aligned_cols=61  Identities=13%  Similarity=0.195  Sum_probs=39.3

Q ss_pred             HHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCchhHHHHHHHHHHcCCCCchhhHHHHHH
Q 021791           66 RNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHKPQLSLDKLNFMKEKGICPTVATYTSVVK  127 (307)
Q Consensus        66 ~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~  127 (307)
                      -+..+-++.+....+.|++....+.+++|-+.+|+..|.++++..+.+.- .+...|..++.
T Consensus        24 we~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K~~-~~~~~y~~~lq   84 (103)
T cd00923          24 WELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKDKCG-AHKEIYPYILQ   84 (103)
T ss_pred             HHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHcc-CchhhHHHHHH
Confidence            34555566666666777888888888888888888888888877764421 13334544443

Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.

>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]

Probab=93.13  E-value=4.6  Score=33.89  Aligned_cols=143  Identities=15%  Similarity=0.192  Sum_probs=106.8

Q ss_pred             chhhHHHHHHHHHhcCChHHHHHHHHHHHhCC-CCCCHhhHHHHHHHHhcCCChhHHHHHHHHHhhcCCCCccHHHH-HH
Q 021791          118 TVATYTSVVKCLCSCGRIEDAEELLGEMVRNG-VSPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDDLCVPNIHTY-NI  195 (307)
Q Consensus       118 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~-~~  195 (307)
                      -..+|...++.-.+..-++.|..+|-++.+.+ ..+++..++++|..++ .|++.-|.++|+.-...   -||...| .-
T Consensus       396 ~t~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~-~~d~~ta~~ifelGl~~---f~d~~~y~~k  471 (660)
T COG5107         396 LTFVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYA-TGDRATAYNIFELGLLK---FPDSTLYKEK  471 (660)
T ss_pred             hhhHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHh-cCCcchHHHHHHHHHHh---CCCchHHHHH
Confidence            45677888888888889999999999999888 5677788888888664 57888999999987776   3454444 55


Q ss_pred             HHHHHHhcCcHHHHHHHHHHHhhCCCCCC--HHhHHHHHHHHHccCcHHHHHHHHHHHHHcCCCCcHhhHHHHH
Q 021791          196 LIGMFMALNRMDMVREIWNHVKGSELGLD--LDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLY  267 (307)
Q Consensus       196 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~  267 (307)
                      .+..+...++-+.|..+|+....+ +..+  ...|..+|+-=..-|+...+..+=++|...  .|-..+.....
T Consensus       472 yl~fLi~inde~naraLFetsv~r-~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e~--~pQen~~evF~  542 (660)
T COG5107         472 YLLFLIRINDEENARALFETSVER-LEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFREL--VPQENLIEVFT  542 (660)
T ss_pred             HHHHHHHhCcHHHHHHHHHHhHHH-HHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHHH--cCcHhHHHHHH
Confidence            677788899999999999965543 1213  457888998888889988888887777654  44444433333

>PF13431 TPR_17: Tetratricopeptide repeat

Probab=93.07  E-value=0.14  Score=25.51  Aligned_cols=23  Identities=17%  Similarity=0.338  Sum_probs=10.7

Q ss_pred             CccHHHHHHHHHHHHhcCcHHHH
Q 021791          187 VPNIHTYNILIGMFMALNRMDMV  209 (307)
Q Consensus       187 ~~~~~~~~~l~~~~~~~~~~~~a  209 (307)
                      |-|..+|..+...|...|++++|
T Consensus        10 P~n~~a~~nla~~~~~~g~~~~A   32 (34)
T PF13431_consen   10 PNNAEAYNNLANLYLNQGDYEEA   32 (34)
T ss_pred             CCCHHHHHHHHHHHHHCcCHHhh
Confidence            33444444444444444444444

>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia

Probab=93.05  E-value=2.3  Score=30.16  Aligned_cols=119  Identities=13%  Similarity=0.091  Sum_probs=65.0

Q ss_pred             hhHHHHHHH---HhcCCChhHHHHHHHHHhhcCCCCccHHHHHHHHHHHHhcCcHHHHHHHHHHHhhCCCCCCHHhHHHH
Q 021791          155 ETYNCFFKE---YRGRKDANGAMKLYRQMKEDDLCVPNIHTYNILIGMFMALNRMDMVREIWNHVKGSELGLDLDSYTML  231 (307)
Q Consensus       155 ~~~~~l~~~---~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l  231 (307)
                      .+.+.|+..   -.+.++.+.+..++..+.-...-.+...++.  ...+...|+|.+|+.+|+.+....  |....-..|
T Consensus         8 ~iv~gLie~~~~al~~~~~~D~e~lL~ALrvLRP~~~e~~~~~--~~l~i~r~~w~dA~rlLr~l~~~~--~~~p~~kAL   83 (160)
T PF09613_consen    8 EIVGGLIEVLSVALRLGDPDDAEALLDALRVLRPEFPELDLFD--GWLHIVRGDWDDALRLLRELEERA--PGFPYAKAL   83 (160)
T ss_pred             HHHHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCchHHHHHH--HHHHHHhCCHHHHHHHHHHHhccC--CCChHHHHH
Confidence            344444443   4577888999999988877642123333333  334668899999999999987763  333333444


Q ss_pred             HHHHH-ccCcHHHHHHHHHHHHHcCCCCcHhhHHHHHHHHhhchhHHHHHH
Q 021791          232 IHGLC-EKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRR  281 (307)
Q Consensus       232 i~~~~-~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~  281 (307)
                      +..|. ..|+.+ =..+-+++.+.+-.|+..   .+++.+....+...|..
T Consensus        84 lA~CL~~~~D~~-Wr~~A~evle~~~d~~a~---~Lv~~Ll~~~~~~~a~~  130 (160)
T PF09613_consen   84 LALCLYALGDPS-WRRYADEVLESGADPDAR---ALVRALLARADLEPAHE  130 (160)
T ss_pred             HHHHHHHcCChH-HHHHHHHHHhcCCChHHH---HHHHHHHHhccccchhh
Confidence            44443 333332 122233455544333332   34555555544444443

>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=92.96  E-value=0.38  Score=23.65  Aligned_cols=30  Identities=13%  Similarity=0.243  Sum_probs=26.2

Q ss_pred             HHHHHHHHHHHHhcCchhhHHHHHHHHHhc
Q 021791            4 VKMYTSLIYGWCKINRIDMAERFLGEMIER   33 (307)
Q Consensus         4 ~~~~~~li~~~~~~g~~~~a~~~~~~~~~~   33 (307)
                      +.+|..+..+|...|++++|+..|++.++.
T Consensus         1 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~   30 (34)
T PF00515_consen    1 AEAYYNLGNAYFQLGDYEEALEYYQRALEL   30 (34)
T ss_dssp             HHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHhCCchHHHHHHHHHHHH
Confidence            357889999999999999999999999875

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....

>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=92.93  E-value=0.11  Score=36.22  Aligned_cols=86  Identities=7%  Similarity=0.116  Sum_probs=61.1

Q ss_pred             HHHHHHHhcCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHhcCCChhHHHHHHHHHhhcCCCCccHHHHHHHHHHHHhc
Q 021791          124 SVVKCLCSCGRIEDAEELLGEMVRNGVSPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDDLCVPNIHTYNILIGMFMAL  203 (307)
Q Consensus       124 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  203 (307)
                      .++..+.+.+.++.....++.+...+...+....+.++..|++.++.++..++++....        .-...+++.|.+.
T Consensus        12 ~vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~~~~--------yd~~~~~~~c~~~   83 (143)
T PF00637_consen   12 EVISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLKTSNN--------YDLDKALRLCEKH   83 (143)
T ss_dssp             CCHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTTSSSS--------S-CTHHHHHHHTT
T ss_pred             HHHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcccccc--------cCHHHHHHHHHhc
Confidence            35667777888888888888888776666788889999999999888888877772211        2234566777777


Q ss_pred             CcHHHHHHHHHHHh
Q 021791          204 NRMDMVREIWNHVK  217 (307)
Q Consensus       204 ~~~~~a~~~~~~~~  217 (307)
                      |.++++..++.++.
T Consensus        84 ~l~~~a~~Ly~~~~   97 (143)
T PF00637_consen   84 GLYEEAVYLYSKLG   97 (143)
T ss_dssp             TSHHHHHHHHHCCT
T ss_pred             chHHHHHHHHHHcc
Confidence            77777777766544

These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.

>PF13170 DUF4003: Protein of unknown function (DUF4003)

Probab=92.86  E-value=4.1  Score=32.56  Aligned_cols=153  Identities=16%  Similarity=0.168  Sum_probs=91.8

Q ss_pred             chhHHHHHHHHHHcCCCCchhhHHHHHHHHHh--cC----ChHHHHHHHHHHHhCCCC---CCHhhHHHHHHHHhcCCCh
Q 021791          100 PQLSLDKLNFMKEKGICPTVATYTSVVKCLCS--CG----RIEDAEELLGEMVRNGVS---PSAETYNCFFKEYRGRKDA  170 (307)
Q Consensus       100 ~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~--~~----~~~~a~~~~~~~~~~~~~---~~~~~~~~l~~~~~~~~~~  170 (307)
                      ++..+.+++.|.+.|+.-+..+|.+.......  ..    ....|..+|+.|++..+-   ++..++..++..  ..++.
T Consensus        78 ~~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~~~~~  155 (297)
T PF13170_consen   78 FKEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDYPFAALLAM--TSEDV  155 (297)
T ss_pred             HHHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccchhHHHHHhc--ccccH
Confidence            34567788999999998887776653333332  22    345689999999986432   344455555543  34443


Q ss_pred             ----hHHHHHHHHHhhcCCCCccH-HHHHHHHHHHHhcCc--HHHHHHHHHHHhhCCCCCCHHhHHHHHHHHHccCc---
Q 021791          171 ----NGAMKLYRQMKEDDLCVPNI-HTYNILIGMFMALNR--MDMVREIWNHVKGSELGLDLDSYTMLIHGLCEKQK---  240 (307)
Q Consensus       171 ----~~a~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~--~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~---  240 (307)
                          +.+..+|+.+.+.+..+-|. ...+.++..+.....  ...+.++++.+.+.|+++....|..+.-...-.+.   
T Consensus       156 e~l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~~~kik~~~yp~lGlLall~~~~~~  235 (297)
T PF13170_consen  156 EELAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKNGVKIKYMHYPTLGLLALLEDPEEK  235 (297)
T ss_pred             HHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCccccccccHHHHHHhcCCchHH
Confidence                55777788888766534443 344444443332222  45788889999999998888777766433322222   


Q ss_pred             -HHHHHHHHHHHHHc
Q 021791          241 -WKEACQYFVEMIEK  254 (307)
Q Consensus       241 -~~~a~~~~~~~~~~  254 (307)
                       .+...++.+.+.+.
T Consensus       236 ~~~~i~ev~~~L~~~  250 (297)
T PF13170_consen  236 IVEEIKEVIDELKEQ  250 (297)
T ss_pred             HHHHHHHHHHHHhhC
Confidence             33444444444443

>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1

Probab=92.84  E-value=1.6  Score=28.19  Aligned_cols=59  Identities=12%  Similarity=0.090  Sum_probs=30.8

Q ss_pred             HHHHHHHHHhhCCCCCCHHhHHHHHHHHHccCcHHHHHHHHHHHHHcCCCCcHhhHHHHH
Q 021791          208 MVREIWNHVKGSELGLDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLY  267 (307)
Q Consensus       208 ~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~  267 (307)
                      +..+-++.+....+.|++......+++|.+-+++..|+++|+-...+ ..+....|..++
T Consensus        28 e~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K-~~~~~~~Y~~~l   86 (108)
T PF02284_consen   28 ELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDK-CGNKKEIYPYIL   86 (108)
T ss_dssp             HHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TTT-TTHHHHHH
T ss_pred             HHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHH-ccChHHHHHHHH
Confidence            44555555555666666666666666666666666666666665544 222222455444

9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....

>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A

Probab=92.77  E-value=0.34  Score=25.09  Aligned_cols=30  Identities=20%  Similarity=0.224  Sum_probs=25.6

Q ss_pred             HHHHHHHHHHHHhcCchhhHHHHHHHHHhc
Q 021791            4 VKMYTSLIYGWCKINRIDMAERFLGEMIER   33 (307)
Q Consensus         4 ~~~~~~li~~~~~~g~~~~a~~~~~~~~~~   33 (307)
                      ..+++.|...|...|++++|..++++....
T Consensus         2 a~~~~~la~~~~~~g~~~~A~~~~~~al~~   31 (42)
T PF13374_consen    2 ASALNNLANAYRAQGRYEEALELLEEALEI   31 (42)
T ss_dssp             HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhhhhcchhhHHHHHHHHH
Confidence            468899999999999999999999988653

>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia

Probab=92.52  E-value=2.8  Score=29.77  Aligned_cols=51  Identities=25%  Similarity=0.191  Sum_probs=22.7

Q ss_pred             hcCChHHHHHHHHHHHhCCCCCCHhhH-HHHHHHHhcCCChhHHHHHHHHHhhc
Q 021791          131 SCGRIEDAEELLGEMVRNGVSPSAETY-NCFFKEYRGRKDANGAMKLYRQMKED  183 (307)
Q Consensus       131 ~~~~~~~a~~~~~~~~~~~~~~~~~~~-~~l~~~~~~~~~~~~a~~~~~~~~~~  183 (307)
                      +.++.+++..++..+.-.  +|..... ..-...+...|++.+|.++|+++...
T Consensus        22 ~~~~~~D~e~lL~ALrvL--RP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~   73 (160)
T PF09613_consen   22 RLGDPDDAEALLDALRVL--RPEFPELDLFDGWLHIVRGDWDDALRLLRELEER   73 (160)
T ss_pred             ccCChHHHHHHHHHHHHh--CCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhcc
Confidence            444555555555555442  2221111 11122244555555555555555444

>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=92.47  E-value=7.2  Score=34.44  Aligned_cols=184  Identities=12%  Similarity=0.053  Sum_probs=112.5

Q ss_pred             HHHHHHHHHHHHHhcCCCCCHHHHHHHH--HH-HHhcCCchhHHHHHHHHHH-------cCCCCchhhHHHHHHHHHhcC
Q 021791           64 TIRNAEKVFDEMRVRGIEPDVTSFSIVL--HV-YSRAHKPQLSLDKLNFMKE-------KGICPTVATYTSVVKCLCSCG  133 (307)
Q Consensus        64 ~~~~a~~~~~~~~~~~~~~~~~~~~~ll--~~-~~~~~~~~~a~~~~~~~~~-------~~~~~~~~~~~~ll~~~~~~~  133 (307)
                      ....+.++++...+.|.. ........+  .+ +....|.+.|+.+|+...+       .|   ......-+..+|.+..
T Consensus       227 ~~~~a~~~~~~~a~~g~~-~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~---~~~a~~~lg~~Y~~g~  302 (552)
T KOG1550|consen  227 ELSEAFKYYREAAKLGHS-EAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKG---LPPAQYGLGRLYLQGL  302 (552)
T ss_pred             hhhHHHHHHHHHHhhcch-HHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhc---CCccccHHHHHHhcCC
Confidence            357888999888887622 222222222  22 4456789999999988877       44   3345666777777643


Q ss_pred             -----ChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHhc-CCChhHHHHHHHHHhhcCCCCccHHHHHHHHHHHH--hcCc
Q 021791          134 -----RIEDAEELLGEMVRNGVSPSAETYNCFFKEYRG-RKDANGAMKLYRQMKEDDLCVPNIHTYNILIGMFM--ALNR  205 (307)
Q Consensus       134 -----~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~--~~~~  205 (307)
                           +.+.|..++...-..|.+ +.......+..... ..+...|.++|...-+.|.  +...-+.+++....  ...+
T Consensus       303 ~~~~~d~~~A~~~~~~aA~~g~~-~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~G~--~~A~~~la~~y~~G~gv~r~  379 (552)
T KOG1550|consen  303 GVEKIDYEKALKLYTKAAELGNP-DAQYLLGVLYETGTKERDYRRAFEYYSLAAKAGH--ILAIYRLALCYELGLGVERN  379 (552)
T ss_pred             CCccccHHHHHHHHHHHHhcCCc-hHHHHHHHHHHcCCccccHHHHHHHHHHHHHcCC--hHHHHHHHHHHHhCCCcCCC
Confidence                 567799999988887653 54444333322222 2467899999999988873  43333333333222  3347


Q ss_pred             HHHHHHHHHHHhhCCCCCCHHhHHHHHHHHHccCcHHHHHHHHHHHHHcCC
Q 021791          206 MDMVREIWNHVKGSELGLDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGL  256 (307)
Q Consensus       206 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~  256 (307)
                      .+.|...+.+.-+.| .|...--...+..+.. ++++.+...+..+.+.|.
T Consensus       380 ~~~A~~~~k~aA~~g-~~~A~~~~~~~~~~g~-~~~~~~~~~~~~~a~~g~  428 (552)
T KOG1550|consen  380 LELAFAYYKKAAEKG-NPSAAYLLGAFYEYGV-GRYDTALALYLYLAELGY  428 (552)
T ss_pred             HHHHHHHHHHHHHcc-ChhhHHHHHHHHHHcc-ccccHHHHHHHHHHHhhh
Confidence            888999999988887 3332222223333333 666666666666655543

>KOG4570 consensus Uncharacterized conserved protein [Function unknown]

Probab=92.46  E-value=1.8  Score=34.30  Aligned_cols=101  Identities=17%  Similarity=0.189  Sum_probs=44.5

Q ss_pred             CCCCchhhHHHHHHHHHhcCChHHHHHHHHHHHhCC---CCCCHhhHHHHHHHHhcCCChhHHHHHHHHHhhcCCCCccH
Q 021791          114 GICPTVATYTSVVKCLCSCGRIEDAEELLGEMVRNG---VSPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDDLCVPNI  190 (307)
Q Consensus       114 ~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~  190 (307)
                      |...+..+...++..-....+++.++..+-++...-   ..|+. +-..+++. +..-++++++.++..=...|. -||.
T Consensus        59 g~~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~-~~~~~irl-llky~pq~~i~~l~npIqYGi-F~dq  135 (418)
T KOG4570|consen   59 GLPVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNW-TIHTWIRL-LLKYDPQKAIYTLVNPIQYGI-FPDQ  135 (418)
T ss_pred             CCCcceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccc-cHHHHHHH-HHccChHHHHHHHhCcchhcc-ccch
Confidence            333344444444444444455555555555554320   01111 11112222 122344455555555445554 4555


Q ss_pred             HHHHHHHHHHHhcCcHHHHHHHHHHHh
Q 021791          191 HTYNILIGMFMALNRMDMVREIWNHVK  217 (307)
Q Consensus       191 ~~~~~l~~~~~~~~~~~~a~~~~~~~~  217 (307)
                      .+++.+++.+.+.+++.+|..+.-.|.
T Consensus       136 f~~c~l~D~flk~~n~~~aa~vvt~~~  162 (418)
T KOG4570|consen  136 FTFCLLMDSFLKKENYKDAASVVTEVM  162 (418)
T ss_pred             hhHHHHHHHHHhcccHHHHHHHHHHHH
Confidence            555555555555555555555444443

>COG0457 NrfG FOG: TPR repeat [General function prediction only]

Probab=92.16  E-value=3.8  Score=30.55  Aligned_cols=225  Identities=16%  Similarity=0.059  Sum_probs=158.1

Q ss_pred             HHHHHHHHHHHHHHhcCCC-CCHHHHHHHHHHHHhcCCchhHHHHHHHHHHc-CCCCchhhHHHHHHHHHhcCChHHHHH
Q 021791           63 KTIRNAEKVFDEMRVRGIE-PDVTSFSIVLHVYSRAHKPQLSLDKLNFMKEK-GICPTVATYTSVVKCLCSCGRIEDAEE  140 (307)
Q Consensus        63 ~~~~~a~~~~~~~~~~~~~-~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~ll~~~~~~~~~~~a~~  140 (307)
                      +....+...+......... ............+...++...+...+...... ........+......+...+....+..
T Consensus        37 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  116 (291)
T COG0457          37 GELAEALELLEEALELLPNSDLAGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALE  116 (291)
T ss_pred             hhHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHH
Confidence            4455566666665554322 13577788888899999999999988887752 234466677778888888899999999


Q ss_pred             HHHHHHhCCCCCCHhhHHHHHH-HHhcCCChhHHHHHHHHHhhcCCC-CccHHHHHHHHHHHHhcCcHHHHHHHHHHHhh
Q 021791          141 LLGEMVRNGVSPSAETYNCFFK-EYRGRKDANGAMKLYRQMKEDDLC-VPNIHTYNILIGMFMALNRMDMVREIWNHVKG  218 (307)
Q Consensus       141 ~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~  218 (307)
                      .+.........+ ......... .+...++++.+...+.+....... ......+......+...++.+.+...+.....
T Consensus       117 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~  195 (291)
T COG0457         117 LLEKALALDPDP-DLAEALLALGALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKALK  195 (291)
T ss_pred             HHHHHHcCCCCc-chHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHh
Confidence            999988764443 222233333 788999999999999998663210 12344445555557788999999999999887


Q ss_pred             CCCCCCHHhHHHHHHHHHccCcHHHHHHHHHHHHHcCCCCc-HhhHHHHHHHHhhchhHHHHHHHHHHhhhcC
Q 021791          219 SELGLDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQ-KVTFETLYRGLIQSDMLRTWRRLKKKLDEES  290 (307)
Q Consensus       219 ~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~  290 (307)
                      .........+..+...+...++++.|...+......  .|+ ...+..+...+...+..+.+...+++.....
T Consensus       196 ~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  266 (291)
T COG0457         196 LNPDDDAEALLNLGLLYLKLGKYEEALEYYEKALEL--DPDNAEALYNLALLLLELGRYEEALEALEKALELD  266 (291)
T ss_pred             hCcccchHHHHHhhHHHHHcccHHHHHHHHHHHHhh--CcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence            632213677888888889999999999999999875  333 3444545555556777888888877765443

>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=92.15  E-value=7.9  Score=34.19  Aligned_cols=178  Identities=15%  Similarity=0.035  Sum_probs=110.6

Q ss_pred             chhHHHHHHHHHHcCCCCchhhHHHHHHH-----HHhcCChHHHHHHHHHHHh-------CCCCCCHhhHHHHHHHHhcC
Q 021791          100 PQLSLDKLNFMKEKGICPTVATYTSVVKC-----LCSCGRIEDAEELLGEMVR-------NGVSPSAETYNCFFKEYRGR  167 (307)
Q Consensus       100 ~~~a~~~~~~~~~~~~~~~~~~~~~ll~~-----~~~~~~~~~a~~~~~~~~~-------~~~~~~~~~~~~l~~~~~~~  167 (307)
                      ...+.++++...+.|..   .....+..+     +....+.+.|...|+....       .+   .......+..+|.+.
T Consensus       228 ~~~a~~~~~~~a~~g~~---~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~---~~~a~~~lg~~Y~~g  301 (552)
T KOG1550|consen  228 LSEAFKYYREAAKLGHS---EAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKG---LPPAQYGLGRLYLQG  301 (552)
T ss_pred             hhHHHHHHHHHHhhcch---HHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhc---CCccccHHHHHHhcC
Confidence            45788888888887632   222222222     4466799999999998876       44   334566677777664


Q ss_pred             C-----ChhHHHHHHHHHhhcCCCCccHHHHHHHHHHHHh-cCcHHHHHHHHHHHhhCCCCCCHHhHHHHHHHHH----c
Q 021791          168 K-----DANGAMKLYRQMKEDDLCVPNIHTYNILIGMFMA-LNRMDMVREIWNHVKGSELGLDLDSYTMLIHGLC----E  237 (307)
Q Consensus       168 ~-----~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~----~  237 (307)
                      .     +.+.|..++...-..+  .|+...+-..+..... ..+...|.+.|...-..|..   ..+-.+..+|.    -
T Consensus       302 ~~~~~~d~~~A~~~~~~aA~~g--~~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~G~~---~A~~~la~~y~~G~gv  376 (552)
T KOG1550|consen  302 LGVEKIDYEKALKLYTKAAELG--NPDAQYLLGVLYETGTKERDYRRAFEYYSLAAKAGHI---LAIYRLALCYELGLGV  376 (552)
T ss_pred             CCCccccHHHHHHHHHHHHhcC--CchHHHHHHHHHHcCCccccHHHHHHHHHHHHHcCCh---HHHHHHHHHHHhCCCc
Confidence            3     5677999999998887  5666655444444333 35678999999999988743   33333332222    3


Q ss_pred             cCcHHHHHHHHHHHHHcCCCCcHhhHHHHHHHHhhchhHHHHHHHHHHhhhcC
Q 021791          238 KQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDEES  290 (307)
Q Consensus       238 ~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~  290 (307)
                      ..+...|..++.+.-+.| .|...--...+..+.. +..+.+.-.+..+.+.+
T Consensus       377 ~r~~~~A~~~~k~aA~~g-~~~A~~~~~~~~~~g~-~~~~~~~~~~~~~a~~g  427 (552)
T KOG1550|consen  377 ERNLELAFAYYKKAAEKG-NPSAAYLLGAFYEYGV-GRYDTALALYLYLAELG  427 (552)
T ss_pred             CCCHHHHHHHHHHHHHcc-ChhhHHHHHHHHHHcc-ccccHHHHHHHHHHHhh
Confidence            457889999999998887 3433222223333333 55555555444444443

>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=91.97  E-value=0.6  Score=22.80  Aligned_cols=29  Identities=10%  Similarity=0.218  Sum_probs=25.0

Q ss_pred             HHHHHHHHHHHhcCchhhHHHHHHHHHhc
Q 021791            5 KMYTSLIYGWCKINRIDMAERFLGEMIER   33 (307)
Q Consensus         5 ~~~~~li~~~~~~g~~~~a~~~~~~~~~~   33 (307)
                      ..|..+...+...|++++|++.|++..+.
T Consensus         2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l   30 (34)
T PF07719_consen    2 EAWYYLGQAYYQLGNYEEAIEYFEKALEL   30 (34)
T ss_dssp             HHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence            46778899999999999999999999875

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....

>PF13431 TPR_17: Tetratricopeptide repeat

Probab=91.92  E-value=0.25  Score=24.61  Aligned_cols=20  Identities=20%  Similarity=0.375  Sum_probs=8.0

Q ss_pred             hhhHHHHHHHHHhcCChHHH
Q 021791          119 VATYTSVVKCLCSCGRIEDA  138 (307)
Q Consensus       119 ~~~~~~ll~~~~~~~~~~~a  138 (307)
                      ..+|+.+...|...|++++|
T Consensus        13 ~~a~~nla~~~~~~g~~~~A   32 (34)
T PF13431_consen   13 AEAYNNLANLYLNQGDYEEA   32 (34)
T ss_pred             HHHHHHHHHHHHHCcCHHhh
Confidence            33344444444444444333

>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A

Probab=91.89  E-value=0.56  Score=24.22  Aligned_cols=28  Identities=18%  Similarity=0.319  Sum_probs=17.2

Q ss_pred             HhHHHHHHHHHccCcHHHHHHHHHHHHH
Q 021791          226 DSYTMLIHGLCEKQKWKEACQYFVEMIE  253 (307)
Q Consensus       226 ~~~~~li~~~~~~g~~~~a~~~~~~~~~  253 (307)
                      .+++.+...|...|++++|..++++...
T Consensus         3 ~~~~~la~~~~~~g~~~~A~~~~~~al~   30 (42)
T PF13374_consen    3 SALNNLANAYRAQGRYEEALELLEEALE   30 (42)
T ss_dssp             HHHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhhhhcchhhHHHHHHHH
Confidence            3556666666666666666666666543

>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1

Probab=91.66  E-value=2.5  Score=27.32  Aligned_cols=60  Identities=13%  Similarity=0.182  Sum_probs=37.1

Q ss_pred             HHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCchhHHHHHHHHHHcCCCCchhhHHHHHH
Q 021791           67 NAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHKPQLSLDKLNFMKEKGICPTVATYTSVVK  127 (307)
Q Consensus        67 ~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~  127 (307)
                      +..+-++.+....+.|++.+..+.+++|.+.+++..|.++|+.++.+-- +....|..++.
T Consensus        28 e~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K~~-~~~~~Y~~~lq   87 (108)
T PF02284_consen   28 ELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDKCG-NKKEIYPYILQ   87 (108)
T ss_dssp             HHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHTT-T-TTHHHHHHH
T ss_pred             HHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHHcc-ChHHHHHHHHH
Confidence            4555666666667778888888888888888888888888877765522 12225655544

9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....

>KOG1258 consensus mRNA processing protein [RNA processing and modification]

Probab=91.64  E-value=8.5  Score=33.47  Aligned_cols=85  Identities=13%  Similarity=0.106  Sum_probs=46.7

Q ss_pred             HHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHH-hcCCchhHHHHHHHHHHc-CCC-CchhhHHHHHHHHHhcCChHHH
Q 021791           62 EKTIRNAEKVFDEMRVRGIEPDVTSFSIVLHVYS-RAHKPQLSLDKLNFMKEK-GIC-PTVATYTSVVKCLCSCGRIEDA  138 (307)
Q Consensus        62 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~-~~~~~~~a~~~~~~~~~~-~~~-~~~~~~~~ll~~~~~~~~~~~a  138 (307)
                      .|..+.+.++|++-++. ++.+...|...+..+. ..|+.+...+.|+..... |.. .+...|...|.--...+++...
T Consensus        92 lg~~~~s~~Vfergv~a-ip~SvdlW~~Y~~f~~n~~~d~~~lr~~fe~A~~~vG~dF~S~~lWdkyie~en~qks~k~v  170 (577)
T KOG1258|consen   92 LGNAENSVKVFERGVQA-IPLSVDLWLSYLAFLKNNNGDPETLRDLFERAKSYVGLDFLSDPLWDKYIEFENGQKSWKRV  170 (577)
T ss_pred             hhhHHHHHHHHHHHHHh-hhhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhcccchhccHHHHHHHHHHhccccHHHH
Confidence            55666667777666543 5555555655554443 345555556666555443 211 1334455555555556666666


Q ss_pred             HHHHHHHHh
Q 021791          139 EELLGEMVR  147 (307)
Q Consensus       139 ~~~~~~~~~  147 (307)
                      ..+++++++
T Consensus       171 ~~iyeRile  179 (577)
T KOG1258|consen  171 ANIYERILE  179 (577)
T ss_pred             HHHHHHHHh
Confidence            666666554

>KOG4234 consensus TPR repeat-containing protein [General function prediction only]

Probab=91.41  E-value=4.6  Score=29.93  Aligned_cols=88  Identities=13%  Similarity=0.076  Sum_probs=49.9

Q ss_pred             HhcCCChhHHHHHHHHHhhcCCCCcc-----HHHHHHHHHHHHhcCcHHHHHHHHHHHhhCCCCCCHHhHHHHHHHHHcc
Q 021791          164 YRGRKDANGAMKLYRQMKEDDLCVPN-----IHTYNILIGMFMALNRMDMVREIWNHVKGSELGLDLDSYTMLIHGLCEK  238 (307)
Q Consensus       164 ~~~~~~~~~a~~~~~~~~~~~~~~~~-----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~  238 (307)
                      +...|++++|..-|......-  ++.     +..|..-..++.+.+.++.|+.-.....+.+.. .......-..+|-+.
T Consensus       105 ~F~ngdyeeA~skY~~Ale~c--p~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pt-y~kAl~RRAeayek~  181 (271)
T KOG4234|consen  105 LFKNGDYEEANSKYQEALESC--PSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPT-YEKALERRAEAYEKM  181 (271)
T ss_pred             hhhcccHHHHHHHHHHHHHhC--ccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCch-hHHHHHHHHHHHHhh
Confidence            445566666666666655542  221     233444455666777777777766666655321 222222334456666


Q ss_pred             CcHHHHHHHHHHHHHc
Q 021791          239 QKWKEACQYFVEMIEK  254 (307)
Q Consensus       239 g~~~~a~~~~~~~~~~  254 (307)
                      ..+++|+.=|+++++.
T Consensus       182 ek~eealeDyKki~E~  197 (271)
T KOG4234|consen  182 EKYEEALEDYKKILES  197 (271)
T ss_pred             hhHHHHHHHHHHHHHh
Confidence            7777777777777764

>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=91.38  E-value=0.73  Score=22.59  Aligned_cols=27  Identities=19%  Similarity=0.262  Sum_probs=13.4

Q ss_pred             hHHHHHHHHHhcCChHHHHHHHHHHHh
Q 021791          121 TYTSVVKCLCSCGRIEDAEELLGEMVR  147 (307)
Q Consensus       121 ~~~~ll~~~~~~~~~~~a~~~~~~~~~  147 (307)
                      +|..+..+|...|++++|+..|++..+
T Consensus         3 ~~~~~g~~~~~~~~~~~A~~~~~~al~   29 (34)
T PF00515_consen    3 AYYNLGNAYFQLGDYEEALEYYQRALE   29 (34)
T ss_dssp             HHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhCCchHHHHHHHHHHH
Confidence            344455555555555555555555444

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....

>PF13929 mRNA_stabil: mRNA stabilisation

Probab=90.86  E-value=6.7  Score=30.88  Aligned_cols=115  Identities=9%  Similarity=0.064  Sum_probs=65.6

Q ss_pred             hHHHHHHHHHHHh-CCCCCCHhhHHHHHHHHhcCC--ChhHHHHHHHHHhhcCCCCccHHHHHHHHHHHHhcCcHHHHHH
Q 021791          135 IEDAEELLGEMVR-NGVSPSAETYNCFFKEYRGRK--DANGAMKLYRQMKEDDLCVPNIHTYNILIGMFMALNRMDMVRE  211 (307)
Q Consensus       135 ~~~a~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~  211 (307)
                      +.+|+.+|+.... ..+--|..+...+++......  ....-.++.+.+...-.-.++..+...++..++..++|..-.+
T Consensus       144 Vv~aL~L~~~~~~~~~Ii~d~evislLL~sMv~~~~~~l~alYEvV~~l~~t~~~~l~~~vi~~Il~~L~~~~dW~kl~~  223 (292)
T PF13929_consen  144 VVEALKLYDGLNPDESIIFDEEVISLLLKSMVIDENTKLNALYEVVDFLVSTFSKSLTRNVIISILEILAESRDWNKLFQ  223 (292)
T ss_pred             HHHHHHHhhccCcccceeeChHHHHHHHHHHHhccccchhhHHHHHHHHHhccccCCChhHHHHHHHHHHhcccHHHHHH
Confidence            4455555552211 123335666666666655421  2233333333343331115666777777778888888888887


Q ss_pred             HHHHHhhC-CCCCCHHhHHHHHHHHHccCcHHHHHHHHH
Q 021791          212 IWNHVKGS-ELGLDLDSYTMLIHGLCEKQKWKEACQYFV  249 (307)
Q Consensus       212 ~~~~~~~~-~~~~~~~~~~~li~~~~~~g~~~~a~~~~~  249 (307)
                      +|+..... +..-|...|..+|......|+..-..++..
T Consensus       224 fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~~kiI~  262 (292)
T PF13929_consen  224 FWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVMRKIID  262 (292)
T ss_pred             HHHHhcccCCCCCCCchHHHHHHHHHHcCCHHHHHHHhh
Confidence            77776654 445577778888888777777654444433

>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional

Probab=90.62  E-value=9.8  Score=32.35  Aligned_cols=95  Identities=11%  Similarity=0.081  Sum_probs=65.2

Q ss_pred             HHHHHHHHhcCCchhHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHhcC
Q 021791           88 SIVLHVYSRAHKPQLSLDKLNFMKEKGICPTVATYTSVVKCLCSCGRIEDAEELLGEMVRNGVSPSAETYNCFFKEYRGR  167 (307)
Q Consensus        88 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  167 (307)
                      ......+...|+++.+.+.+...... +.....+...+++...+.|+++.|..+-.-|....+. ++.........-...
T Consensus       327 ~l~~~i~~~lg~ye~~~~~~s~~~~~-~~s~~~~~~~~~r~~~~l~r~~~a~s~a~~~l~~eie-~~ei~~iaa~sa~~l  404 (831)
T PRK15180        327 QLRSVIFSHLGYYEQAYQDISDVEKI-IGTTDSTLRCRLRSLHGLARWREALSTAEMMLSNEIE-DEEVLTVAAGSADAL  404 (831)
T ss_pred             HHHHHHHHHhhhHHHHHHHhhchhhh-hcCCchHHHHHHHhhhchhhHHHHHHHHHHHhccccC-ChhheeeecccHHHH
Confidence            33344566788888888887666543 2235567788888888888888888888888776665 444444444444556


Q ss_pred             CChhHHHHHHHHHhhcC
Q 021791          168 KDANGAMKLYRQMKEDD  184 (307)
Q Consensus       168 ~~~~~a~~~~~~~~~~~  184 (307)
                      |-++++...|+++...+
T Consensus       405 ~~~d~~~~~wk~~~~~~  421 (831)
T PRK15180        405 QLFDKSYHYWKRVLLLN  421 (831)
T ss_pred             hHHHHHHHHHHHHhccC
Confidence            77788888888887665

>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=90.44  E-value=7.8  Score=33.87  Aligned_cols=102  Identities=12%  Similarity=0.094  Sum_probs=66.0

Q ss_pred             HHhcCCchhHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHhcCCChhHH
Q 021791           94 YSRAHKPQLSLDKLNFMKEKGICPTVATYTSVVKCLCSCGRIEDAEELLGEMVRNGVSPSAETYNCFFKEYRGRKDANGA  173 (307)
Q Consensus        94 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a  173 (307)
                      ..+.|+++.|.++..+..      +..-|..|..+..+.+++..|.+.|....+         |..|+-.+...|+.+..
T Consensus       647 al~lgrl~iA~~la~e~~------s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d---------~~~LlLl~t~~g~~~~l  711 (794)
T KOG0276|consen  647 ALKLGRLDIAFDLAVEAN------SEVKWRQLGDAALSAGELPLASECFLRARD---------LGSLLLLYTSSGNAEGL  711 (794)
T ss_pred             hhhcCcHHHHHHHHHhhc------chHHHHHHHHHHhhcccchhHHHHHHhhcc---------hhhhhhhhhhcCChhHH
Confidence            346677777777655432      556688888888888888888888776543         34566666777777666


Q ss_pred             HHHHHHHhhcCCCCccHHHHHHHHHHHHhcCcHHHHHHHHHHHh
Q 021791          174 MKLYRQMKEDDLCVPNIHTYNILIGMFMALNRMDMVREIWNHVK  217 (307)
Q Consensus       174 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~  217 (307)
                      ..+-....+.+  ..|...     -+|...|+++++.+++..-.
T Consensus       712 ~~la~~~~~~g--~~N~AF-----~~~~l~g~~~~C~~lLi~t~  748 (794)
T KOG0276|consen  712 AVLASLAKKQG--KNNLAF-----LAYFLSGDYEECLELLISTQ  748 (794)
T ss_pred             HHHHHHHHhhc--ccchHH-----HHHHHcCCHHHHHHHHHhcC
Confidence            66666666655  344332     23445778888777766543

>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A

Probab=90.28  E-value=0.71  Score=22.28  Aligned_cols=24  Identities=25%  Similarity=0.494  Sum_probs=12.0

Q ss_pred             HHHHHHccCcHHHHHHHHHHHHHc
Q 021791          231 LIHGLCEKQKWKEACQYFVEMIEK  254 (307)
Q Consensus       231 li~~~~~~g~~~~a~~~~~~~~~~  254 (307)
                      +..++.+.|++++|...|+++++.
T Consensus         6 ~a~~~~~~g~~~~A~~~~~~~~~~   29 (33)
T PF13174_consen    6 LARCYYKLGDYDEAIEYFQRLIKR   29 (33)
T ss_dssp             HHHHHHHHCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHccCHHHHHHHHHHHHHH
Confidence            334444455555555555555543

>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases

Probab=90.10  E-value=9.3  Score=31.26  Aligned_cols=65  Identities=6%  Similarity=-0.061  Sum_probs=47.6

Q ss_pred             CHHhHHHHHHHHHccCcHHHHHHHHHHHHHcCCCC---cHhhHHHHHHHHhhchhHHHHHHHHHHhhh
Q 021791          224 DLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLP---QKVTFETLYRGLIQSDMLRTWRRLKKKLDE  288 (307)
Q Consensus       224 ~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p---~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~  288 (307)
                      ...+|..++..+.+.|.++.|...+.++.+.+...   .+.....-+..+...|+..+|...++...+
T Consensus       145 ~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~  212 (352)
T PF02259_consen  145 LAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLK  212 (352)
T ss_pred             HHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            45578888888889999999999888887653211   334455556677788888888888877766

Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding

>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional

Probab=89.77  E-value=10  Score=32.21  Aligned_cols=125  Identities=10%  Similarity=0.062  Sum_probs=76.8

Q ss_pred             hcCCChhHHHHHHHHH-hhcCCCCccHHHHHHHHHHHHhcCcHHHHHHHHHHHhhCCCCCCHHhHHHHHHHHHccCcHHH
Q 021791          165 RGRKDANGAMKLYRQM-KEDDLCVPNIHTYNILIGMFMALNRMDMVREIWNHVKGSELGLDLDSYTMLIHGLCEKQKWKE  243 (307)
Q Consensus       165 ~~~~~~~~a~~~~~~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~  243 (307)
                      ...|+.-.|-+-+... ..... -|+.....+.  .....|+++.+...+....+. +.....+...+++...+.|++++
T Consensus       300 ~~~gd~~aas~~~~~~lr~~~~-~p~~i~l~~~--i~~~lg~ye~~~~~~s~~~~~-~~s~~~~~~~~~r~~~~l~r~~~  375 (831)
T PRK15180        300 LADGDIIAASQQLFAALRNQQQ-DPVLIQLRSV--IFSHLGYYEQAYQDISDVEKI-IGTTDSTLRCRLRSLHGLARWRE  375 (831)
T ss_pred             hhccCHHHHHHHHHHHHHhCCC-CchhhHHHHH--HHHHhhhHHHHHHHhhchhhh-hcCCchHHHHHHHhhhchhhHHH
Confidence            4456665554444333 33322 4444433333  345678888888887766543 23356677888888888889999


Q ss_pred             HHHHHHHHHHcCCCCcHhhHHHHHHHHhhchhHHHHHHHHHHhhhcCCCCC
Q 021791          244 ACQYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDEESITFG  294 (307)
Q Consensus       244 a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~  294 (307)
                      |..+-..|+...+. ++.......-.....|-++++.-.++++-..+.+-+
T Consensus       376 a~s~a~~~l~~eie-~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~~~~~~  425 (831)
T PRK15180        376 ALSTAEMMLSNEIE-DEEVLTVAAGSADALQLFDKSYHYWKRVLLLNPETQ  425 (831)
T ss_pred             HHHHHHHHhccccC-ChhheeeecccHHHHhHHHHHHHHHHHHhccCChhc
Confidence            99888888876553 333333333344566778888888887755444433

>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=89.77  E-value=1.3  Score=21.49  Aligned_cols=27  Identities=22%  Similarity=0.432  Sum_probs=15.8

Q ss_pred             hHHHHHHHHHccCcHHHHHHHHHHHHH
Q 021791          227 SYTMLIHGLCEKQKWKEACQYFVEMIE  253 (307)
Q Consensus       227 ~~~~li~~~~~~g~~~~a~~~~~~~~~  253 (307)
                      .|..+..++...|++++|++.|++.++
T Consensus         3 ~~~~lg~~~~~~~~~~~A~~~~~~al~   29 (34)
T PF07719_consen    3 AWYYLGQAYYQLGNYEEAIEYFEKALE   29 (34)
T ss_dssp             HHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence            344555566666666666666666654

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....

>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK

Probab=89.08  E-value=6  Score=27.70  Aligned_cols=54  Identities=11%  Similarity=0.139  Sum_probs=33.4

Q ss_pred             hcCCChhHHHHHHHHHhhcCCCCccHHHHHHHHHHHHhcCcHHHHHHHHHHHhhCC
Q 021791          165 RGRKDANGAMKLYRQMKEDDLCVPNIHTYNILIGMFMALNRMDMVREIWNHVKGSE  220 (307)
Q Consensus       165 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~  220 (307)
                      ...++++++..++..+.-...-.+...++...  .+...|+|++|..+|+.+.+.+
T Consensus        21 L~~~d~~D~e~lLdALrvLrP~~~e~d~~dg~--l~i~rg~w~eA~rvlr~l~~~~   74 (153)
T TIGR02561        21 LRSADPYDAQAMLDALRVLRPNLKELDMFDGW--LLIARGNYDEAARILRELLSSA   74 (153)
T ss_pred             HhcCCHHHHHHHHHHHHHhCCCccccchhHHH--HHHHcCCHHHHHHHHHhhhccC
Confidence            34677777777777776553212333334333  3456778888888888777653

This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.

>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]

Probab=88.98  E-value=14  Score=31.78  Aligned_cols=181  Identities=10%  Similarity=0.030  Sum_probs=110.0

Q ss_pred             CcHHHHHHHHHHHHhhCCCCcchhhHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCchhHHHHHHHHHHcCCC
Q 021791           37 PNVVTYNVLLNGVCRRASLHPNERFEKTIRNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHKPQLSLDKLNFMKEKGIC  116 (307)
Q Consensus        37 p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~  116 (307)
                      .|-....+++..+..          .....-.+.+..+|..-|  -+-..+..++.+|... ..+.-..+|+++.+..+.
T Consensus        64 l~d~~l~~~~~~f~~----------n~k~~~veh~c~~~l~~~--e~kmal~el~q~y~en-~n~~l~~lWer~ve~dfn  130 (711)
T COG1747          64 LDDSCLVTLLTIFGD----------NHKNQIVEHLCTRVLEYG--ESKMALLELLQCYKEN-GNEQLYSLWERLVEYDFN  130 (711)
T ss_pred             ccchHHHHHHHHhcc----------chHHHHHHHHHHHHHHhc--chHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcch
Confidence            344555556666655          556666777777777664  3566777788888777 456677778877777553


Q ss_pred             CchhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCC-----CCHhhHHHHHHHHhcCCChhHHHHHHHHHhhcCCCCccHH
Q 021791          117 PTVATYTSVVKCLCSCGRIEDAEELLGEMVRNGVS-----PSAETYNCFFKEYRGRKDANGAMKLYRQMKEDDLCVPNIH  191 (307)
Q Consensus       117 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~-----~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~  191 (307)
                       |...-..|...|-+ ++.+.+...|.++...=++     .-...|..+...  -..+.+..+.+...+........-..
T Consensus       131 -Dvv~~ReLa~~yEk-ik~sk~a~~f~Ka~yrfI~~~q~~~i~evWeKL~~~--i~dD~D~fl~l~~kiqt~lg~~~~~V  206 (711)
T COG1747         131 -DVVIGRELADKYEK-IKKSKAAEFFGKALYRFIPRRQNAAIKEVWEKLPEL--IGDDKDFFLRLQKKIQTKLGEGRGSV  206 (711)
T ss_pred             -hHHHHHHHHHHHHH-hchhhHHHHHHHHHHHhcchhhhhhHHHHHHHHHHh--ccccHHHHHHHHHHHHHhhccchHHH
Confidence             44333444444444 7777777777766544221     012345444432  23556666777666666544344455


Q ss_pred             HHHHHHHHHHhcCcHHHHHHHHHHHhhCCCCCCHHhHHHHHHHH
Q 021791          192 TYNILIGMFMALNRMDMVREIWNHVKGSELGLDLDSYTMLIHGL  235 (307)
Q Consensus       192 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~  235 (307)
                      .+..+-.-|....++++|++++..+.+..-+ |..+-..++.-+
T Consensus       207 l~qdv~~~Ys~~eN~~eai~Ilk~il~~d~k-~~~ar~~~i~~l  249 (711)
T COG1747         207 LMQDVYKKYSENENWTEAIRILKHILEHDEK-DVWARKEIIENL  249 (711)
T ss_pred             HHHHHHHHhccccCHHHHHHHHHHHhhhcch-hhhHHHHHHHHH
Confidence            5666667777788888888888888776533 555555555544

>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A

Probab=88.95  E-value=0.99  Score=21.74  Aligned_cols=27  Identities=22%  Similarity=0.351  Sum_probs=22.9

Q ss_pred             HHHHHHHHHhcCchhhHHHHHHHHHhc
Q 021791            7 YTSLIYGWCKINRIDMAERFLGEMIER   33 (307)
Q Consensus         7 ~~~li~~~~~~g~~~~a~~~~~~~~~~   33 (307)
                      +-.+..++.+.|++++|.+.|+++++.
T Consensus         3 ~~~~a~~~~~~g~~~~A~~~~~~~~~~   29 (33)
T PF13174_consen    3 LYRLARCYYKLGDYDEAIEYFQRLIKR   29 (33)
T ss_dssp             HHHHHHHHHHHCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence            344677888899999999999999876

>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]

Probab=88.80  E-value=5.5  Score=29.98  Aligned_cols=77  Identities=13%  Similarity=0.072  Sum_probs=59.0

Q ss_pred             hHHHHHHHHhcCCChhHHHHHHHHHhhcCCCCccHHHHHHHHHHHHhcCcHHHHHHHHHHHhhCC--CCCCHHhHHHHHH
Q 021791          156 TYNCFFKEYRGRKDANGAMKLYRQMKEDDLCVPNIHTYNILIGMFMALNRMDMVREIWNHVKGSE--LGLDLDSYTMLIH  233 (307)
Q Consensus       156 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~li~  233 (307)
                      |.+..++.+.+.+...+++...+.-.+..  +.|...-..+++.++-.|+|++|..-++-.-...  ..+....|..+|.
T Consensus         3 Tl~~t~seLL~~~sL~dai~~a~~qVkak--Ptda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t~~a~lyr~lir   80 (273)
T COG4455           3 TLRDTISELLDDNSLQDAIGLARDQVKAK--PTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDTVGASLYRHLIR   80 (273)
T ss_pred             chHHHHHHHHHhccHHHHHHHHHHHHhcC--CccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccchHHHHHHHHHH
Confidence            45566778888999999999999888875  6677777889999999999999998887766542  2233456666665


Q ss_pred             H
Q 021791          234 G  234 (307)
Q Consensus       234 ~  234 (307)
                      +
T Consensus        81 ~   81 (273)
T COG4455          81 C   81 (273)
T ss_pred             H
Confidence            4

>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=88.67  E-value=9.9  Score=29.66  Aligned_cols=154  Identities=12%  Similarity=0.100  Sum_probs=66.2

Q ss_pred             CchhHHHHHHHHHHcCCCCchh---hHHHHHHHHHhcCChHHHHHHHHHHHhC-----CCCCCHhhHHHHHHHHhcCCCh
Q 021791           99 KPQLSLDKLNFMKEKGICPTVA---TYTSVVKCLCSCGRIEDAEELLGEMVRN-----GVSPSAETYNCFFKEYRGRKDA  170 (307)
Q Consensus        99 ~~~~a~~~~~~~~~~~~~~~~~---~~~~ll~~~~~~~~~~~a~~~~~~~~~~-----~~~~~~~~~~~l~~~~~~~~~~  170 (307)
                      ++++|+.-|++..+....-..+   +...++..+.+.+++++..+.|.++...     .-.-+..+.|.++..-....+.
T Consensus        42 ~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrNySEKsIN~IlDyiStS~~m  121 (440)
T KOG1464|consen   42 EPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVTRNYSEKSINSILDYISTSKNM  121 (440)
T ss_pred             CHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHhhhhhh
Confidence            4455555555554432111222   2233455555556666555555554321     0111334445555544444444


Q ss_pred             hHHHHHHHHHhhc----CCCCccHHHHHHHHHHHHhcCcHHHHHHHHHHHhhCCCC-----------CCHHhHHHHHHHH
Q 021791          171 NGAMKLYRQMKED----DLCVPNIHTYNILIGMFMALNRMDMVREIWNHVKGSELG-----------LDLDSYTMLIHGL  235 (307)
Q Consensus       171 ~~a~~~~~~~~~~----~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-----------~~~~~~~~li~~~  235 (307)
                      +-...+++...+.    .....--.|-+-|...|...+.+.+..++++++....-.           --...|..=|+.|
T Consensus       122 ~LLQ~FYeTTL~ALkdAKNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD~kKGtQLLEiYAlEIQmY  201 (440)
T KOG1464|consen  122 DLLQEFYETTLDALKDAKNERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDDQKKGTQLLEIYALEIQMY  201 (440)
T ss_pred             HHHHHHHHHHHHHHHhhhcceeeeeccchHhhhheeHHHHHHHHHHHHHHHHHhccccCchhhhccchhhhhHhhHhhhh
Confidence            4433333322211    000111122234455555555555555555554421000           0123455555666


Q ss_pred             HccCcHHHHHHHHHHHH
Q 021791          236 CEKQKWKEACQYFVEMI  252 (307)
Q Consensus       236 ~~~g~~~~a~~~~~~~~  252 (307)
                      ....+-++...++++.+
T Consensus       202 T~qKnNKkLK~lYeqal  218 (440)
T KOG1464|consen  202 TEQKNNKKLKALYEQAL  218 (440)
T ss_pred             hhhcccHHHHHHHHHHH
Confidence            65555555556665554

>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function

Probab=88.66  E-value=12  Score=30.47  Aligned_cols=137  Identities=9%  Similarity=0.071  Sum_probs=80.5

Q ss_pred             CchhhHHHHHHHHHhcCC------------hHHHHHHHHHHHhCCCCCCHhhHHHHHHHHhcCCChhHHHHHHHHHhhcC
Q 021791          117 PTVATYTSVVKCLCSCGR------------IEDAEELLGEMVRNGVSPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDD  184 (307)
Q Consensus       117 ~~~~~~~~ll~~~~~~~~------------~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~  184 (307)
                      -|..+|-.++..=-..-.            .+.-+.++++..+.+. -+......+|..+.+..+.++..+-++.+....
T Consensus        17 ~di~~Wl~li~~Qd~~~~~~~~~~~~~~a~~E~klsilerAL~~np-~~~~L~l~~l~~~~~~~~~~~l~~~we~~l~~~   95 (321)
T PF08424_consen   17 HDIEAWLELIEFQDELFRLQSSSKAERRALAERKLSILERALKHNP-DSERLLLGYLEEGEKVWDSEKLAKKWEELLFKN   95 (321)
T ss_pred             ccHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHC
Confidence            367777777754322211            2345667777766643 366677777777777777777788888887764


Q ss_pred             CCCccHHHHHHHHHHHHh---cCcHHHHHHHHHHHhhC------CC-C---CCHH-------hHHHHHHHHHccCcHHHH
Q 021791          185 LCVPNIHTYNILIGMFMA---LNRMDMVREIWNHVKGS------EL-G---LDLD-------SYTMLIHGLCEKQKWKEA  244 (307)
Q Consensus       185 ~~~~~~~~~~~l~~~~~~---~~~~~~a~~~~~~~~~~------~~-~---~~~~-------~~~~li~~~~~~g~~~~a  244 (307)
                        +-+...|...+.....   .-.++....+|.+....      +. .   +...       .+..+...+...|..+.|
T Consensus        96 --~~~~~LW~~yL~~~q~~~~~f~v~~~~~~y~~~l~~L~~~~~~~~~~~~~~~~~e~~~l~v~~r~~~fl~~aG~~E~A  173 (321)
T PF08424_consen   96 --PGSPELWREYLDFRQSNFASFTVSDVRDVYEKCLRALSRRRSGRMTSHPDLPELEEFMLYVFLRLCRFLRQAGYTERA  173 (321)
T ss_pred             --CCChHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHhhccccccccchhhHHHHHHHHHHHHHHHHHHCCchHHH
Confidence              4466677766666544   23466666666654431      11 0   0001       122222333466777777


Q ss_pred             HHHHHHHHHcCC
Q 021791          245 CQYFVEMIEKGL  256 (307)
Q Consensus       245 ~~~~~~~~~~~~  256 (307)
                      +.+++-+++.++
T Consensus       174 va~~Qa~lE~n~  185 (321)
T PF08424_consen  174 VALWQALLEFNF  185 (321)
T ss_pred             HHHHHHHHHHHc
Confidence            777777776654

>COG5108 RPO41 Mitochondrial DNA-directed RNA polymerase [Transcription]

Probab=88.48  E-value=5.4  Score=35.27  Aligned_cols=95  Identities=17%  Similarity=0.270  Sum_probs=66.7

Q ss_pred             HHHHHHHhcCchhhHHHHHHHHHhc--CCCCcHHHHHHHHHHHHhhCCCCcchhhHHHHHHHHHHHHHHHhcCCCCCHHH
Q 021791            9 SLIYGWCKINRIDMAERFLGEMIER--GVEPNVVTYNVLLNGVCRRASLHPNERFEKTIRNAEKVFDEMRVRGIEPDVTS   86 (307)
Q Consensus         9 ~li~~~~~~g~~~~a~~~~~~~~~~--~~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~   86 (307)
                      +|+.+|...|++.++.++++.+...  |-+-=...+|..|+...+.|.+.-    ....+.+.+.+++..-   .-|..|
T Consensus        33 sl~eacv~n~~~~rs~~ll~s~~~~~~~~k~~l~~~nlyi~~~~q~~sf~l----~~~~~~~~~~lq~a~l---n~d~~t  105 (1117)
T COG5108          33 SLFEACVYNGDFLRSKQLLKSFIDHNKGDKILLPMINLYIREIIQRGSFEL----TDVLSNAKELLQQARL---NGDSLT  105 (1117)
T ss_pred             HHHHHHHhcchHHHHHHHHHHHhcCCcCCeeehhHHHHHHHHHHhcCCccH----HHHHHHHHHHHHHhhc---CCcchH
Confidence            7899999999999999999999765  444456788889999999876654    4555677777776653   347778


Q ss_pred             HHHHHHHHHhcCCchhHHHHHHHH
Q 021791           87 FSIVLHVYSRAHKPQLSLDKLNFM  110 (307)
Q Consensus        87 ~~~ll~~~~~~~~~~~a~~~~~~~  110 (307)
                      |..|+++-...-+-....-++.++
T Consensus       106 ~all~~~sln~t~~~l~~pvl~~~  129 (1117)
T COG5108         106 YALLCQASLNPTQRQLGLPVLHEL  129 (1117)
T ss_pred             HHHHHHhhcChHhHHhccHHHHHH
Confidence            887777655433333333333333

>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=88.42  E-value=8.3  Score=28.45  Aligned_cols=133  Identities=11%  Similarity=0.013  Sum_probs=72.1

Q ss_pred             hhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHhhHH--HHHHHHhcCCChhHHHHHHHHHhhcCC-CCccHHHHHH
Q 021791          119 VATYTSVVKCLCSCGRIEDAEELLGEMVRNGVSPSAETYN--CFFKEYRGRKDANGAMKLYRQMKEDDL-CVPNIHTYNI  195 (307)
Q Consensus       119 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~--~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~~  195 (307)
                      ...|..++.... .+.+ +.....+.+...+.+-.-.++.  .+...+...+++++|..-++....... ......+--.
T Consensus        54 S~~Y~~~i~~~~-ak~~-~~~~~~ekf~~~n~~t~Ya~laaL~lAk~~ve~~~~d~A~aqL~~~l~~t~De~lk~l~~lR  131 (207)
T COG2976          54 SAQYQNAIKAVQ-AKKP-KSIAAAEKFVQANGKTIYAVLAALELAKAEVEANNLDKAEAQLKQALAQTKDENLKALAALR  131 (207)
T ss_pred             HHHHHHHHHHHh-cCCc-hhHHHHHHHHhhccccHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccchhHHHHHHHHHH
Confidence            334555555443 2333 4444445555432111111122  233456777888888888877665321 0001112223


Q ss_pred             HHHHHHhcCcHHHHHHHHHHHhhCCCCCCHHhHHHHHHHHHccCcHHHHHHHHHHHHHcC
Q 021791          196 LIGMFMALNRMDMVREIWNHVKGSELGLDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKG  255 (307)
Q Consensus       196 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~  255 (307)
                      |.+.....|.+|+|...++.....+.  .......--+.+...|+-++|..-|.+.++.+
T Consensus       132 LArvq~q~~k~D~AL~~L~t~~~~~w--~~~~~elrGDill~kg~k~~Ar~ay~kAl~~~  189 (207)
T COG2976         132 LARVQLQQKKADAALKTLDTIKEESW--AAIVAELRGDILLAKGDKQEARAAYEKALESD  189 (207)
T ss_pred             HHHHHHHhhhHHHHHHHHhccccccH--HHHHHHHhhhHHHHcCchHHHHHHHHHHHHcc
Confidence            45556677888888888877766532  22223334466777888888888888887764

>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins

Probab=88.23  E-value=9.8  Score=29.84  Aligned_cols=91  Identities=8%  Similarity=-0.042  Sum_probs=55.9

Q ss_pred             HHHHHHHHHhcCCchhHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHh-
Q 021791           87 FSIVLHVYSRAHKPQLSLDKLNFMKEKGICPTVATYTSVVKCLCSCGRIEDAEELLGEMVRNGVSPSAETYNCFFKEYR-  165 (307)
Q Consensus        87 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~-  165 (307)
                      +..=|++++..++|.+++...-+--+.--+....+...-|-.|.+.+.+..+.++-..-...--.-+...|..++..|. 
T Consensus        86 cvvGIQALAEmnrWreVLsWvlqyYq~pEklPpkIleLCILLysKv~Ep~amlev~~~WL~~p~Nq~lp~y~~vaELyLl  165 (309)
T PF07163_consen   86 CVVGIQALAEMNRWREVLSWVLQYYQVPEKLPPKILELCILLYSKVQEPAAMLEVASAWLQDPSNQSLPEYGTVAELYLL  165 (309)
T ss_pred             hhhhHHHHHHHhhHHHHHHHHHHHhcCcccCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhCcccCCchhhHHHHHHHHH
Confidence            3445677778888887777655443332223445566666777888888887777666554322223344666655554 


Q ss_pred             ----cCCChhHHHHHH
Q 021791          166 ----GRKDANGAMKLY  177 (307)
Q Consensus       166 ----~~~~~~~a~~~~  177 (307)
                          =.|.+++|.++.
T Consensus       166 ~VLlPLG~~~eAeelv  181 (309)
T PF07163_consen  166 HVLLPLGHFSEAEELV  181 (309)
T ss_pred             HHHhccccHHHHHHHH
Confidence                357888887776

Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane

>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]

Probab=88.22  E-value=16  Score=31.47  Aligned_cols=165  Identities=13%  Similarity=0.157  Sum_probs=73.5

Q ss_pred             CHHHHHHHHHHHHhcCCchhHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHhhHHHHHH
Q 021791           83 DVTSFSIVLHVYSRAHKPQLSLDKLNFMKEKGICPTVATYTSVVKCLCSCGRIEDAEELLGEMVRNGVSPSAETYNCFFK  162 (307)
Q Consensus        83 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~  162 (307)
                      |.....+++..+.....+.-+..+-.+|...|-  +-..+..++.+|... ..++-..+|+++.+..+. |.+.-..|..
T Consensus        65 ~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~e--~kmal~el~q~y~en-~n~~l~~lWer~ve~dfn-Dvv~~ReLa~  140 (711)
T COG1747          65 DDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYGE--SKMALLELLQCYKEN-GNEQLYSLWERLVEYDFN-DVVIGRELAD  140 (711)
T ss_pred             cchHHHHHHHHhccchHHHHHHHHHHHHHHhcc--hHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcch-hHHHHHHHHH
Confidence            334444555555555555555555555555432  444555555555555 445555555555554332 3333333333


Q ss_pred             HHhcCCChhHHHHHHHHHhhcCCC----CccHHHHHHHHHHHHhcCcHHHHHHHHHHHhhC-CCCCCHHhHHHHHHHHHc
Q 021791          163 EYRGRKDANGAMKLYRQMKEDDLC----VPNIHTYNILIGMFMALNRMDMVREIWNHVKGS-ELGLDLDSYTMLIHGLCE  237 (307)
Q Consensus       163 ~~~~~~~~~~a~~~~~~~~~~~~~----~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~li~~~~~  237 (307)
                      .|.+ ++.+.+..+|..+...-+.    ..=...|.-|...  -..+.+....+...+... |...-...+.-+-.-|..
T Consensus       141 ~yEk-ik~sk~a~~f~Ka~yrfI~~~q~~~i~evWeKL~~~--i~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~Ys~  217 (711)
T COG1747         141 KYEK-IKKSKAAEFFGKALYRFIPRRQNAAIKEVWEKLPEL--IGDDKDFFLRLQKKIQTKLGEGRGSVLMQDVYKKYSE  217 (711)
T ss_pred             HHHH-hchhhHHHHHHHHHHHhcchhhhhhHHHHHHHHHHh--ccccHHHHHHHHHHHHHhhccchHHHHHHHHHHHhcc
Confidence            3333 5555555555554433210    0001123333321  123344444444444332 222222333334444555


Q ss_pred             cCcHHHHHHHHHHHHHc
Q 021791          238 KQKWKEACQYFVEMIEK  254 (307)
Q Consensus       238 ~g~~~~a~~~~~~~~~~  254 (307)
                      ..++++|++++...++.
T Consensus       218 ~eN~~eai~Ilk~il~~  234 (711)
T COG1747         218 NENWTEAIRILKHILEH  234 (711)
T ss_pred             ccCHHHHHHHHHHHhhh
Confidence            55666666666655544

>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]

Probab=88.14  E-value=13  Score=30.42  Aligned_cols=119  Identities=20%  Similarity=0.219  Sum_probs=73.9

Q ss_pred             HHHHHHHHHHHHHHHhcC-----CCCCHHHHHHHHHHHHhcCCchhHHHHHHHHHHc----CCCCchh-hH-----HHHH
Q 021791           62 EKTIRNAEKVFDEMRVRG-----IEPDVTSFSIVLHVYSRAHKPQLSLDKLNFMKEK----GICPTVA-TY-----TSVV  126 (307)
Q Consensus        62 ~~~~~~a~~~~~~~~~~~-----~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~----~~~~~~~-~~-----~~ll  126 (307)
                      .+.++++++.|+....-.     ......++..|-..|.+..|.++|.-+.....+.    ++. |.. -|     -.|.
T Consensus       135 ls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~-d~~~kyr~~~lyhma  213 (518)
T KOG1941|consen  135 LSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLK-DWSLKYRAMSLYHMA  213 (518)
T ss_pred             HHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcC-chhHHHHHHHHHHHH
Confidence            677888888887765431     1123457888888899998988887766554332    322 211 12     2233


Q ss_pred             HHHHhcCChHHHHHHHHHHHh----CCCCCC-HhhHHHHHHHHhcCCChhHHHHHHHHHh
Q 021791          127 KCLCSCGRIEDAEELLGEMVR----NGVSPS-AETYNCFFKEYRGRKDANGAMKLYRQMK  181 (307)
Q Consensus       127 ~~~~~~~~~~~a~~~~~~~~~----~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~  181 (307)
                      -++...|..-+|.+.-++..+    .|-.+. ......+.+.|...|+.+.|+.-|++..
T Consensus       214 ValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIyR~~gd~e~af~rYe~Am  273 (518)
T KOG1941|consen  214 VALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADIYRSRGDLERAFRRYEQAM  273 (518)
T ss_pred             HHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhcccHhHHHHHHHHHH
Confidence            455667777777776665543    343322 2344566778888999988888877654

>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi

Probab=88.13  E-value=19  Score=32.32  Aligned_cols=196  Identities=12%  Similarity=0.090  Sum_probs=108.8

Q ss_pred             CCHHHHHHHHHHHHhcCCchhHHHHHHHHHH-cCCCCc--hhhHHHHHHHHH-hcCChHHHHHHHHHHHhCCCCCCHh--
Q 021791           82 PDVTSFSIVLHVYSRAHKPQLSLDKLNFMKE-KGICPT--VATYTSVVKCLC-SCGRIEDAEELLGEMVRNGVSPSAE--  155 (307)
Q Consensus        82 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~-~~~~~~--~~~~~~ll~~~~-~~~~~~~a~~~~~~~~~~~~~~~~~--  155 (307)
                      .+...|..||..         |++.++.+.+ ..++|.  ..++-.+...+. ...+++.|+..+++.....-+++..  
T Consensus        28 ~~l~~Y~kLI~~---------ai~CL~~~~~~~~l~p~~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~d~   98 (608)
T PF10345_consen   28 EQLKQYYKLIAT---------AIKCLEAVLKQFKLSPRQEARVRLRLASILLEETENLDLAETYLEKAILLCERHRLTDL   98 (608)
T ss_pred             hhHHHHHHHHHH---------HHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHH
Confidence            355667766644         5555655553 333332  334455555555 6778888888888765443222221  


Q ss_pred             ---hHHHHHHHHhcCCChhHHHHHHHHHhhcCCC---CccHHHHHHH-HHHHHhcCcHHHHHHHHHHHhhCC---CCCCH
Q 021791          156 ---TYNCFFKEYRGRKDANGAMKLYRQMKEDDLC---VPNIHTYNIL-IGMFMALNRMDMVREIWNHVKGSE---LGLDL  225 (307)
Q Consensus       156 ---~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~---~~~~~~~~~l-~~~~~~~~~~~~a~~~~~~~~~~~---~~~~~  225 (307)
                         .-..++..+.+.+... |...+++..+.-.-   .+-...|..+ +..+...++...|.+.++.+...-   ..|..
T Consensus        99 k~~~~~ll~~i~~~~~~~~-a~~~l~~~I~~~~~~~~~~w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~~  177 (608)
T PF10345_consen   99 KFRCQFLLARIYFKTNPKA-ALKNLDKAIEDSETYGHSAWYYAFRLLKIQLALQHKDYNAALENLQSIAQLANQRGDPAV  177 (608)
T ss_pred             HHHHHHHHHHHHHhcCHHH-HHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCHHH
Confidence               2234556666666665 88888776554320   1222233333 333333478888888887766532   23344


Q ss_pred             HhHHHHHHHHH--ccCcHHHHHHHHHHHHHcCC---------CCcHhhHHHHHHHH--hhchhHHHHHHHHHHhh
Q 021791          226 DSYTMLIHGLC--EKQKWKEACQYFVEMIEKGL---------LPQKVTFETLYRGL--IQSDMLRTWRRLKKKLD  287 (307)
Q Consensus       226 ~~~~~li~~~~--~~g~~~~a~~~~~~~~~~~~---------~p~~~~~~~l~~~~--~~~g~~~~a~~~~~~~~  287 (307)
                      ..+..++.+..  ..+..+++.+.++++.....         .|--.+|..+++.+  ...|+++.+.+.++.+.
T Consensus       178 ~v~~~l~~~~l~l~~~~~~d~~~~l~~~~~~~~~~q~~~~~~~~qL~~~~lll~l~~~l~~~~~~~~~~~L~~lq  252 (608)
T PF10345_consen  178 FVLASLSEALLHLRRGSPDDVLELLQRAIAQARSLQLDPSVHIPQLKALFLLLDLCCSLQQGDVKNSKQKLKQLQ  252 (608)
T ss_pred             HHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            45555555543  44556777777777644321         23445666666654  46677667776666553

It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].

>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A

Probab=88.13  E-value=1.9  Score=20.96  Aligned_cols=27  Identities=26%  Similarity=0.345  Sum_probs=16.4

Q ss_pred             hHHHHHHHHHccCcHHHHHHHHHHHHH
Q 021791          227 SYTMLIHGLCEKQKWKEACQYFVEMIE  253 (307)
Q Consensus       227 ~~~~li~~~~~~g~~~~a~~~~~~~~~  253 (307)
                      +|..+...|...|++++|...|++.++
T Consensus         3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~   29 (34)
T PF13181_consen    3 AYYNLGKIYEQLGDYEEALEYFEKALE   29 (34)
T ss_dssp             HHHHHHHHHHHTTSHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence            445555666666666666666666554

...

>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex

Probab=88.02  E-value=10  Score=33.97  Aligned_cols=88  Identities=14%  Similarity=0.111  Sum_probs=40.1

Q ss_pred             HHHHHhcCchhhHHHHHHHHHhcCCCCcHHHHHHHHHHHHhhCCCCcchhhHHHHHHHHHHHHHHHhcC-CCCCHHHHHH
Q 021791           11 IYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPNERFEKTIRNAEKVFDEMRVRG-IEPDVTSFSI   89 (307)
Q Consensus        11 i~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~   89 (307)
                      ...+.-+|+|+.|.+.+-+  ..+...+...+...+..+.-.+          -.....   ..+.... -.|...-+..
T Consensus       265 f~~LlLtgqFE~AI~~L~~--~~~~~~dAVH~AIaL~~~gLL~----------~~~~~~---~~lls~~~~~~~~ln~ar  329 (613)
T PF04097_consen  265 FQVLLLTGQFEAAIEFLYR--NEFNRVDAVHFAIALAYYGLLR----------VSDSSS---APLLSVDPGDPPPLNFAR  329 (613)
T ss_dssp             HHHHHHTT-HHHHHHHHHT----T-HHHHHHHHHHHHHTT-------------------------------------HHH
T ss_pred             HHHHHHHhhHHHHHHHHHh--hccCcccHHHHHHHHHHcCCCC----------CCCccc---cceeeecCCCCCCcCHHH
Confidence            4556667888888888876  2223445555555554433311          111100   1221111 0111255777


Q ss_pred             HHHHHHh---cCCchhHHHHHHHHHHc
Q 021791           90 VLHVYSR---AHKPQLSLDKLNFMKEK  113 (307)
Q Consensus        90 ll~~~~~---~~~~~~a~~~~~~~~~~  113 (307)
                      ||..|.+   ..++..|.++|--+...
T Consensus       330 LI~~Y~~~F~~td~~~Al~Y~~li~~~  356 (613)
T PF04097_consen  330 LIGQYTRSFEITDPREALQYLYLICLF  356 (613)
T ss_dssp             HHHHHHHTTTTT-HHHHHHHHHGGGGS
T ss_pred             HHHHHHHHHhccCHHHHHHHHHHHHHc
Confidence            8888876   45677788877666554

It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.

>TIGR03504 FimV_Cterm FimV C-terminal domain

Probab=87.91  E-value=1.6  Score=23.25  Aligned_cols=22  Identities=23%  Similarity=0.235  Sum_probs=10.4

Q ss_pred             HHHHHccCcHHHHHHHHHHHHH
Q 021791          232 IHGLCEKQKWKEACQYFVEMIE  253 (307)
Q Consensus       232 i~~~~~~g~~~~a~~~~~~~~~  253 (307)
                      ..+|...|+.+.|..++++.+.
T Consensus         6 A~ayie~Gd~e~Ar~lL~evl~   27 (44)
T TIGR03504         6 ARAYIEMGDLEGARELLEEVIE   27 (44)
T ss_pred             HHHHHHcCChHHHHHHHHHHHH
Confidence            3444444444444444444443

This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.

>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]

Probab=87.87  E-value=16  Score=31.22  Aligned_cols=246  Identities=9%  Similarity=0.060  Sum_probs=143.5

Q ss_pred             hHHHHHHHHHhcCCCCcHHHHHHHHHHHHhhCCCCcchhhHHHHHHHHHHHHHHHhcC-CCC-CHHHHHHHHHHHHhcCC
Q 021791           22 MAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPNERFEKTIRNAEKVFDEMRVRG-IEP-DVTSFSIVLHVYSRAHK   99 (307)
Q Consensus        22 ~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~-~~~-~~~~~~~ll~~~~~~~~   99 (307)
                      ....+|++..+.  .|+...|+..|..|...-....    ...+.....+|+.....+ ..+ ....|..+.-.+.....
T Consensus       300 ~~~~v~ee~v~~--l~t~sm~e~YI~~~lE~~~~~r----~~~I~h~~~~~~~~~~~~~l~~~~~~~ys~~~l~~~t~~~  373 (568)
T KOG2396|consen  300 RCCAVYEEAVKT--LPTESMWECYITFCLERFTFLR----GKRILHTMCVFRKAHELKLLSECLYKQYSVLLLCLNTLNE  373 (568)
T ss_pred             HHHHHHHHHHHH--hhHHHHHHHHHHHHHHHHHhhh----hhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHhccch
Confidence            345667766654  5677888888887766322111    224555666666665543 333 34456666666666554


Q ss_pred             chhHHHHHHHHHHcCCCCchhhHHHHHHHHHhcC-ChHH-HHHHHHHHHhCCCCCCHhhHHHHHHHHhcCCC-h--hHHH
Q 021791          100 PQLSLDKLNFMKEKGICPTVATYTSVVKCLCSCG-RIED-AEELLGEMVRNGVSPSAETYNCFFKEYRGRKD-A--NGAM  174 (307)
Q Consensus       100 ~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~-~~~~-a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~--~~a~  174 (307)
                      ..++   -..+...++..|...|..-+....+.. +++- ...++..+...-..+....|+...     .++ +  ..-.
T Consensus       374 ~r~~---a~~l~~e~f~~s~k~~~~kl~~~~~s~sD~q~~f~~l~n~~r~~~~s~~~~~w~s~~-----~~dsl~~~~~~  445 (568)
T KOG2396|consen  374 AREV---AVKLTTELFRDSGKMWQLKLQVLIESKSDFQMLFEELFNHLRKQVCSELLISWASAS-----EGDSLQEDTLD  445 (568)
T ss_pred             HhHH---HHHhhHHHhcchHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHhcchhHHHHHHHh-----hccchhHHHHH
Confidence            3332   222222334446666766666555332 2222 223334444332223333444333     122 1  1122


Q ss_pred             HHHHHHhhcCCCCccHHHH-HHHHHHHHhcCcHHHHHHHHHHHhhCCCCCCHHhHHHHHHHH---HccCcHHHHHHHHHH
Q 021791          175 KLYRQMKEDDLCVPNIHTY-NILIGMFMALNRMDMVREIWNHVKGSELGLDLDSYTMLIHGL---CEKQKWKEACQYFVE  250 (307)
Q Consensus       175 ~~~~~~~~~~~~~~~~~~~-~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~---~~~g~~~~a~~~~~~  250 (307)
                      .++......+  .|+..++ +.++..+...|-..+|.+++..+... .+|+...|..+|+.=   ...| ..-+..+++.
T Consensus       446 ~Ii~a~~s~~--~~~~~tl~s~~l~~~~e~~~~~~ark~y~~l~~l-pp~sl~l~r~miq~e~~~~sc~-l~~~r~~yd~  521 (568)
T KOG2396|consen  446 LIISALLSVI--GADSVTLKSKYLDWAYESGGYKKARKVYKSLQEL-PPFSLDLFRKMIQFEKEQESCN-LANIREYYDR  521 (568)
T ss_pred             HHHHHHHHhc--CCceeehhHHHHHHHHHhcchHHHHHHHHHHHhC-CCccHHHHHHHHHHHhhHhhcC-chHHHHHHHH
Confidence            2333333333  4555555 56788888899999999999999887 467888888888643   2233 6778888988


Q ss_pred             HHHc-CCCCcHhhHHHHHHHHhhchhHHHHHHHHHHhh
Q 021791          251 MIEK-GLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLD  287 (307)
Q Consensus       251 ~~~~-~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~  287 (307)
                      |... |  .|+..|.-.+.--...|..+.+-.++.+..
T Consensus       522 a~~~fg--~d~~lw~~y~~~e~~~g~~en~~~~~~ra~  557 (568)
T KOG2396|consen  522 ALREFG--ADSDLWMDYMKEELPLGRPENCGQIYWRAM  557 (568)
T ss_pred             HHHHhC--CChHHHHHHHHhhccCCCcccccHHHHHHH
Confidence            8765 5  677778777777678888888888776643

>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]

Probab=87.84  E-value=5.7  Score=29.89  Aligned_cols=78  Identities=17%  Similarity=0.088  Sum_probs=57.8

Q ss_pred             hHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHhcCCChhHHHHHHHHHhhcCC-CCccHHHHHHHHHH
Q 021791          121 TYTSVVKCLCSCGRIEDAEELLGEMVRNGVSPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDDL-CVPNIHTYNILIGM  199 (307)
Q Consensus       121 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~~l~~~  199 (307)
                      |.+..++.+.+.+...+++...++-.+..+. |..+-..+++.++-.|++++|..-++-.-.... ..+...+|..++.+
T Consensus         3 Tl~~t~seLL~~~sL~dai~~a~~qVkakPt-da~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t~~a~lyr~lir~   81 (273)
T COG4455           3 TLRDTISELLDDNSLQDAIGLARDQVKAKPT-DAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDTVGASLYRHLIRC   81 (273)
T ss_pred             chHHHHHHHHHhccHHHHHHHHHHHHhcCCc-cccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccchHHHHHHHHHHH
Confidence            4556677888999999999998887776544 677788899999999999999887776654421 13445566666643

>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A

Probab=87.73  E-value=1.9  Score=20.92  Aligned_cols=29  Identities=14%  Similarity=0.194  Sum_probs=25.7

Q ss_pred             HHHHHHHHHHHhcCchhhHHHHHHHHHhc
Q 021791            5 KMYTSLIYGWCKINRIDMAERFLGEMIER   33 (307)
Q Consensus         5 ~~~~~li~~~~~~g~~~~a~~~~~~~~~~   33 (307)
                      .+|..+...|...|++++|.+.|++..+.
T Consensus         2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~~   30 (34)
T PF13181_consen    2 EAYYNLGKIYEQLGDYEEALEYFEKALEL   30 (34)
T ss_dssp             HHHHHHHHHHHHTTSHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence            46888999999999999999999998764

...

>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=87.62  E-value=14  Score=32.36  Aligned_cols=82  Identities=6%  Similarity=0.062  Sum_probs=44.0

Q ss_pred             CHhhHHHHHHHHhcCCChhHHHHHHHHHhhcCCCCccHHHHHHHHHHHHhcCcHHHHHHHHHHHhhCCCCCCHHhHHHHH
Q 021791          153 SAETYNCFFKEYRGRKDANGAMKLYRQMKEDDLCVPNIHTYNILIGMFMALNRMDMVREIWNHVKGSELGLDLDSYTMLI  232 (307)
Q Consensus       153 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li  232 (307)
                      +..-|..|.++..+.+++..|.+.|.....          |..|+-.+...|+.+....+-....+.|.      .|...
T Consensus       665 s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d----------~~~LlLl~t~~g~~~~l~~la~~~~~~g~------~N~AF  728 (794)
T KOG0276|consen  665 SEVKWRQLGDAALSAGELPLASECFLRARD----------LGSLLLLYTSSGNAEGLAVLASLAKKQGK------NNLAF  728 (794)
T ss_pred             chHHHHHHHHHHhhcccchhHHHHHHhhcc----------hhhhhhhhhhcCChhHHHHHHHHHHhhcc------cchHH
Confidence            445566666666666666666665554432          23344455555555555555554444432      12333


Q ss_pred             HHHHccCcHHHHHHHHHH
Q 021791          233 HGLCEKQKWKEACQYFVE  250 (307)
Q Consensus       233 ~~~~~~g~~~~a~~~~~~  250 (307)
                      -+|...|+++++.+++.+
T Consensus       729 ~~~~l~g~~~~C~~lLi~  746 (794)
T KOG0276|consen  729 LAYFLSGDYEECLELLIS  746 (794)
T ss_pred             HHHHHcCCHHHHHHHHHh
Confidence            445566777777766654

>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK

Probab=87.47  E-value=7.9  Score=27.14  Aligned_cols=52  Identities=12%  Similarity=0.187  Sum_probs=26.5

Q ss_pred             hcCChHHHHHHHHHHHhCCCC-CCHhhHHHHHHHHhcCCChhHHHHHHHHHhhcC
Q 021791          131 SCGRIEDAEELLGEMVRNGVS-PSAETYNCFFKEYRGRKDANGAMKLYRQMKEDD  184 (307)
Q Consensus       131 ~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~  184 (307)
                      ..++++++..+++.|.-.-+. +...++...  .+...|++++|.++|+++.+..
T Consensus        22 ~~~d~~D~e~lLdALrvLrP~~~e~d~~dg~--l~i~rg~w~eA~rvlr~l~~~~   74 (153)
T TIGR02561        22 RSADPYDAQAMLDALRVLRPNLKELDMFDGW--LLIARGNYDEAARILRELLSSA   74 (153)
T ss_pred             hcCCHHHHHHHHHHHHHhCCCccccchhHHH--HHHHcCCHHHHHHHHHhhhccC
Confidence            355666666666665543111 112233222  2455666666666666666553

This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.

>TIGR03504 FimV_Cterm FimV C-terminal domain

Probab=87.43  E-value=1.8  Score=23.12  Aligned_cols=27  Identities=26%  Similarity=0.452  Sum_probs=23.4

Q ss_pred             HHHHHHHhcCchhhHHHHHHHHHhcCC
Q 021791            9 SLIYGWCKINRIDMAERFLGEMIERGV   35 (307)
Q Consensus         9 ~li~~~~~~g~~~~a~~~~~~~~~~~~   35 (307)
                      .+..+|...|+.+.|.+++++....|-
T Consensus         4 dLA~ayie~Gd~e~Ar~lL~evl~~~~   30 (44)
T TIGR03504         4 DLARAYIEMGDLEGARELLEEVIEEGD   30 (44)
T ss_pred             HHHHHHHHcCChHHHHHHHHHHHHcCC
Confidence            367899999999999999999997543

This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.

>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins

Probab=87.26  E-value=9.4  Score=27.78  Aligned_cols=119  Identities=13%  Similarity=0.144  Sum_probs=63.7

Q ss_pred             hhhHHHHHHHHHhcCCCCcHHHHHHHHHHHHhhCCCCcchhhHHHHHHHHHHHHHHHhcCCCCCH-HHHHHHHHHHHhcC
Q 021791           20 IDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPNERFEKTIRNAEKVFDEMRVRGIEPDV-TSFSIVLHVYSRAH   98 (307)
Q Consensus        20 ~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~ll~~~~~~~   98 (307)
                      |+.|.+.++.-...+ +.|...++..-.++....++.+.......+++|..-|++....  .|+- .++..+..++...+
T Consensus         7 FE~ark~aea~y~~n-P~DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I--~P~~hdAlw~lGnA~ts~A   83 (186)
T PF06552_consen    7 FEHARKKAEAAYAKN-PLDADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKI--NPNKHDALWCLGNAYTSLA   83 (186)
T ss_dssp             HHHHHHHHHHHHHH--TT-HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH---TT-HHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhC-cHhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhc--CCchHHHHHHHHHHHHHHH
Confidence            456666666544432 3466666666666666544444333346677788878777765  4443 45666666665433


Q ss_pred             ----C-------chhHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 021791           99 ----K-------PQLSLDKLNFMKEKGICPTVATYTSVVKCLCSCGRIEDAEELLGEMVRNG  149 (307)
Q Consensus        99 ----~-------~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~  149 (307)
                          +       +++|...|+...+.  .|+...|+.-+....      +|-++..++.+.+
T Consensus        84 ~l~~d~~~A~~~F~kA~~~FqkAv~~--~P~ne~Y~ksLe~~~------kap~lh~e~~~~~  137 (186)
T PF06552_consen   84 FLTPDTAEAEEYFEKATEYFQKAVDE--DPNNELYRKSLEMAA------KAPELHMEIHKQG  137 (186)
T ss_dssp             HH---HHHHHHHHHHHHHHHHHHHHH---TT-HHHHHHHHHHH------THHHHHHHHHHSS
T ss_pred             hhcCChHHHHHHHHHHHHHHHHHHhc--CCCcHHHHHHHHHHH------hhHHHHHHHHHHH
Confidence                2       33444444444443  577777777666643      3555555555543

Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.

>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane

Probab=87.19  E-value=4.7  Score=24.66  Aligned_cols=47  Identities=13%  Similarity=0.080  Sum_probs=29.0

Q ss_pred             ccCcHHHHHHHHHHHHHcCCCCcH--hhHHHHHHHHhhchhHHHHHHHH
Q 021791          237 EKQKWKEACQYFVEMIEKGLLPQK--VTFETLYRGLIQSDMLRTWRRLK  283 (307)
Q Consensus       237 ~~g~~~~a~~~~~~~~~~~~~p~~--~~~~~l~~~~~~~g~~~~a~~~~  283 (307)
                      ..++.++|+..|...++.-..|..  .++..+++++...|+++++..+.
T Consensus        18 ~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~fA   66 (80)
T PF10579_consen   18 HQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAFA   66 (80)
T ss_pred             ccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            455667777777777665322221  25666777777777777666543

Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane

>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed

Probab=86.87  E-value=11  Score=28.05  Aligned_cols=79  Identities=14%  Similarity=0.099  Sum_probs=58.5

Q ss_pred             HhcCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHhcCCChhHHHHHHHHHhhcCC--CCccHHHHHHHHHHHHhcCcHH
Q 021791          130 CSCGRIEDAEELLGEMVRNGVSPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDDL--CVPNIHTYNILIGMFMALNRMD  207 (307)
Q Consensus       130 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~  207 (307)
                      .+.| -+.|.+.|-++...+.--++.....+...| ...+.+++..++....+...  -.+|+..+.+|+..+.+.|+++
T Consensus       118 sr~~-d~~A~~~fL~~E~~~~l~t~elq~aLAtyY-~krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e  195 (203)
T PF11207_consen  118 SRFG-DQEALRRFLQLEGTPELETAELQYALATYY-TKRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYE  195 (203)
T ss_pred             hccC-cHHHHHHHHHHcCCCCCCCHHHHHHHHHHH-HccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchh
Confidence            3444 467888888888776554555555555555 47888999999988766432  1578999999999999999999


Q ss_pred             HHH
Q 021791          208 MVR  210 (307)
Q Consensus       208 ~a~  210 (307)
                      .|-
T Consensus       196 ~AY  198 (203)
T PF11207_consen  196 QAY  198 (203)
T ss_pred             hhh
Confidence            874

>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=86.62  E-value=10  Score=27.49  Aligned_cols=135  Identities=9%  Similarity=0.036  Sum_probs=92.8

Q ss_pred             CHHHHHHHHHHHHhcCCchhHHHHHHHHHHcCCCCch-hhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHh-hHHHH
Q 021791           83 DVTSFSIVLHVYSRAHKPQLSLDKLNFMKEKGICPTV-ATYTSVVKCLCSCGRIEDAEELLGEMVRNGVSPSAE-TYNCF  160 (307)
Q Consensus        83 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~l  160 (307)
                      +...|...++ ..+.+..++|+.-|..+.+.|...-+ ..-..........|+...|...|+++-.....|-.. -...|
T Consensus        58 sgd~flaAL~-lA~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARl  136 (221)
T COG4649          58 SGDAFLAALK-LAQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARL  136 (221)
T ss_pred             chHHHHHHHH-HHHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHH
Confidence            4455665554 34667789999999999988754211 122234455678899999999999998764444332 11111


Q ss_pred             --HHHHhcCCChhHHHHHHHHHhhcCCCCccHHHHHHHHHHHHhcCcHHHHHHHHHHHhhC
Q 021791          161 --FKEYRGRKDANGAMKLYRQMKEDDLCVPNIHTYNILIGMFMALNRMDMVREIWNHVKGS  219 (307)
Q Consensus       161 --~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~  219 (307)
                        .-.+...|.++.+....+.+-..+. +--...-..|.-+-.+.|++..|.+.|..+...
T Consensus       137 raa~lLvD~gsy~dV~srvepLa~d~n-~mR~sArEALglAa~kagd~a~A~~~F~qia~D  196 (221)
T COG4649         137 RAAYLLVDNGSYDDVSSRVEPLAGDGN-PMRHSAREALGLAAYKAGDFAKAKSWFVQIAND  196 (221)
T ss_pred             HHHHHHhccccHHHHHHHhhhccCCCC-hhHHHHHHHHhHHHHhccchHHHHHHHHHHHcc
Confidence              2235678999998888888776654 444455567777788999999999999998764

>PHA02875 ankyrin repeat protein; Provisional

Probab=86.49  E-value=14  Score=31.12  Aligned_cols=68  Identities=18%  Similarity=0.253  Sum_probs=31.5

Q ss_pred             HHHHHhcCCCCCHHH--HHHHHHHHHhcCCchhHHHHHHHHHHcCCCCchh--hHHHHHHHHHhcCChHHHHHHHH
Q 021791           72 FDEMRVRGIEPDVTS--FSIVLHVYSRAHKPQLSLDKLNFMKEKGICPTVA--TYTSVVKCLCSCGRIEDAEELLG  143 (307)
Q Consensus        72 ~~~~~~~~~~~~~~~--~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~ll~~~~~~~~~~~a~~~~~  143 (307)
                      ++.+.+.|..|+...  ..+.+...+..|+.+    +.+.+.+.|..|+..  .....+...+..|+.+.+..+++
T Consensus        18 v~~Ll~~g~~~n~~~~~g~tpL~~A~~~~~~~----~v~~Ll~~ga~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~   89 (413)
T PHA02875         18 ARRLLDIGINPNFEIYDGISPIKLAMKFRDSE----AIKLLMKHGAIPDVKYPDIESELHDAVEEGDVKAVEELLD   89 (413)
T ss_pred             HHHHHHCCCCCCccCCCCCCHHHHHHHcCCHH----HHHHHHhCCCCccccCCCcccHHHHHHHCCCHHHHHHHHH
Confidence            444445565555432  223444455556554    333444455444322  11233445556676666554443

>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models

Probab=86.40  E-value=1.4  Score=20.16  Aligned_cols=18  Identities=33%  Similarity=0.553  Sum_probs=7.6

Q ss_pred             HHHHHHhcCChHHHHHHH
Q 021791          125 VVKCLCSCGRIEDAEELL  142 (307)
Q Consensus       125 ll~~~~~~~~~~~a~~~~  142 (307)
                      +...+...|++++|..++
T Consensus         7 la~~~~~~G~~~eA~~~l   24 (26)
T PF07721_consen    7 LARALLAQGDPDEAERLL   24 (26)
T ss_pred             HHHHHHHcCCHHHHHHHH
Confidence            333444444444444433

The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding

>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases

Probab=85.90  E-value=18  Score=29.62  Aligned_cols=67  Identities=10%  Similarity=0.007  Sum_probs=48.5

Q ss_pred             CccHHHHHHHHHHHHhcCcHHHHHHHHHHHhhCCCCC---CHHhHHHHHHHHHccCcHHHHHHHHHHHHH
Q 021791          187 VPNIHTYNILIGMFMALNRMDMVREIWNHVKGSELGL---DLDSYTMLIHGLCEKQKWKEACQYFVEMIE  253 (307)
Q Consensus       187 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~a~~~~~~~~~  253 (307)
                      .....+|..++..+.+.|.++.|...+..+...+...   .+...-.-+..+...|+..+|+..++...+
T Consensus       143 ~~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~  212 (352)
T PF02259_consen  143 EELAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLK  212 (352)
T ss_pred             hHHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            3455678888888889999999988888887653221   334445556666778888888888887776

Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding

>PRK09687 putative lyase; Provisional

Probab=85.53  E-value=17  Score=28.94  Aligned_cols=185  Identities=13%  Similarity=0.027  Sum_probs=85.3

Q ss_pred             CHHHHHHHHHHHHhcCCc----hhHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCCh-----HHHHHHHHHHHhCCCCCC
Q 021791           83 DVTSFSIVLHVYSRAHKP----QLSLDKLNFMKEKGICPTVATYTSVVKCLCSCGRI-----EDAEELLGEMVRNGVSPS  153 (307)
Q Consensus        83 ~~~~~~~ll~~~~~~~~~----~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~-----~~a~~~~~~~~~~~~~~~  153 (307)
                      |...-...+.++...|+.    .++...+..+...  .++..+-...+.+++..+..     ..+...+.....   .++
T Consensus        67 d~~vR~~A~~aLg~lg~~~~~~~~a~~~L~~l~~~--D~d~~VR~~A~~aLG~~~~~~~~~~~~a~~~l~~~~~---D~~  141 (280)
T PRK09687         67 NPIERDIGADILSQLGMAKRCQDNVFNILNNLALE--DKSACVRASAINATGHRCKKNPLYSPKIVEQSQITAF---DKS  141 (280)
T ss_pred             CHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHhc--CCCHHHHHHHHHHHhcccccccccchHHHHHHHHHhh---CCC
Confidence            445555555556666553    3455555555333  23444444444444444321     122333322222   224


Q ss_pred             HhhHHHHHHHHhcCCChhHHHHHHHHHhhcCCCCccHHHHHHHHHHHHhcC-cHHHHHHHHHHHhhCCCCCCHHhHHHHH
Q 021791          154 AETYNCFFKEYRGRKDANGAMKLYRQMKEDDLCVPNIHTYNILIGMFMALN-RMDMVREIWNHVKGSELGLDLDSYTMLI  232 (307)
Q Consensus       154 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~li  232 (307)
                      ..+-...+.++.+.++ +.+...+-.+.+.    +|..+-...+.++...+ ..+.+...+..+..   .++..+-...+
T Consensus       142 ~~VR~~a~~aLg~~~~-~~ai~~L~~~L~d----~~~~VR~~A~~aLg~~~~~~~~~~~~L~~~L~---D~~~~VR~~A~  213 (280)
T PRK09687        142 TNVRFAVAFALSVIND-EAAIPLLINLLKD----PNGDVRNWAAFALNSNKYDNPDIREAFVAMLQ---DKNEEIRIEAI  213 (280)
T ss_pred             HHHHHHHHHHHhccCC-HHHHHHHHHHhcC----CCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhc---CCChHHHHHHH
Confidence            4454555555555555 3444444444443    22333344444444432 13344444444442   23555556666


Q ss_pred             HHHHccCcHHHHHHHHHHHHHcCCCCcHhhHHHHHHHHhhchhHHHHHHHHHHhh
Q 021791          233 HGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLD  287 (307)
Q Consensus       233 ~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~  287 (307)
                      .++.+.|+ ..|+..+-+..+.+.     .....+.++.+.|.. +|...+..+.
T Consensus       214 ~aLg~~~~-~~av~~Li~~L~~~~-----~~~~a~~ALg~ig~~-~a~p~L~~l~  261 (280)
T PRK09687        214 IGLALRKD-KRVLSVLIKELKKGT-----VGDLIIEAAGELGDK-TLLPVLDTLL  261 (280)
T ss_pred             HHHHccCC-hhHHHHHHHHHcCCc-----hHHHHHHHHHhcCCH-hHHHHHHHHH
Confidence            66666665 345555444444321     233455566666654 3444444443

>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]

Probab=85.37  E-value=14  Score=27.94  Aligned_cols=65  Identities=12%  Similarity=0.011  Sum_probs=34.8

Q ss_pred             hhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHhcCCChhHHHHHHHHHhhcC
Q 021791          119 VATYTSVVKCLCSCGRIEDAEELLGEMVRNGVSPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDD  184 (307)
Q Consensus       119 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~  184 (307)
                      +.+||.+.--+...|+++.|.+.|+...+.++.-+-...|.-|. +.-.|++.-|.+=+-+.-..+
T Consensus        99 ~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi~-~YY~gR~~LAq~d~~~fYQ~D  163 (297)
T COG4785          99 PEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIA-LYYGGRYKLAQDDLLAFYQDD  163 (297)
T ss_pred             HHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhcccee-eeecCchHhhHHHHHHHHhcC
Confidence            44566666666666777777777766666543323223332222 223456666665555555443

>PF13929 mRNA_stabil: mRNA stabilisation

Probab=84.97  E-value=17  Score=28.70  Aligned_cols=117  Identities=10%  Similarity=0.142  Sum_probs=61.5

Q ss_pred             CchhhHHHHHHHHHh-cC-ChHHHHHHHHHHHh-CCCCCCHhhHHHHHHHHhcCCChhHHHHHHHHHhhcCCCCccHHHH
Q 021791          117 PTVATYTSVVKCLCS-CG-RIEDAEELLGEMVR-NGVSPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDDLCVPNIHTY  193 (307)
Q Consensus       117 ~~~~~~~~ll~~~~~-~~-~~~~a~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~  193 (307)
                      -|..+...+++.... .+ ....-.++.+-+.. .+-.++..+...++..++..+++.+..+++...........|...|
T Consensus       162 ~d~evislLL~sMv~~~~~~l~alYEvV~~l~~t~~~~l~~~vi~~Il~~L~~~~dW~kl~~fW~~~~~~~~~~~D~rpW  241 (292)
T PF13929_consen  162 FDEEVISLLLKSMVIDENTKLNALYEVVDFLVSTFSKSLTRNVIISILEILAESRDWNKLFQFWEQCIPNSVPGNDPRPW  241 (292)
T ss_pred             eChHHHHHHHHHHHhccccchhhHHHHHHHHHhccccCCChhHHHHHHHHHHhcccHHHHHHHHHHhcccCCCCCCCchH
Confidence            355555555555544 11 12222233333322 2344566666666666666666666666666665552225566666


Q ss_pred             HHHHHHHHhcCcHHHHHHHHHH-----HhhCCCCCCHHhHHHHHH
Q 021791          194 NILIGMFMALNRMDMVREIWNH-----VKGSELGLDLDSYTMLIH  233 (307)
Q Consensus       194 ~~l~~~~~~~~~~~~a~~~~~~-----~~~~~~~~~~~~~~~li~  233 (307)
                      ..++......|+..-..++...     ++..++..+...-..+-+
T Consensus       242 ~~FI~li~~sgD~~~~~kiI~~GhLLwikR~~V~v~~~L~~~L~~  286 (292)
T PF13929_consen  242 AEFIKLIVESGDQEVMRKIIDDGHLLWIKRNNVDVTDELRSQLSE  286 (292)
T ss_pred             HHHHHHHHHcCCHHHHHHHhhCCCeEEeeecCCcCCHHHHHHHHH
Confidence            6666666666666666666554     233444444444443333

>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi

Probab=84.37  E-value=31  Score=31.07  Aligned_cols=184  Identities=12%  Similarity=0.044  Sum_probs=106.8

Q ss_pred             HHHHHHHHH-hcCCCCC--HHHHHHHHHHHH-hcCCchhHHHHHHHHHHcCCCCchh-----hHHHHHHHHHhcCChHHH
Q 021791           68 AEKVFDEMR-VRGIEPD--VTSFSIVLHVYS-RAHKPQLSLDKLNFMKEKGICPTVA-----TYTSVVKCLCSCGRIEDA  138 (307)
Q Consensus        68 a~~~~~~~~-~~~~~~~--~~~~~~ll~~~~-~~~~~~~a~~~~~~~~~~~~~~~~~-----~~~~ll~~~~~~~~~~~a  138 (307)
                      |++-++.+. +..++|.  ..++--+...+. ...+.+.|...+++.....-.++..     .-..++..+.+.+... |
T Consensus        40 ai~CL~~~~~~~~l~p~~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~d~k~~~~~ll~~i~~~~~~~~-a  118 (608)
T PF10345_consen   40 AIKCLEAVLKQFKLSPRQEARVRLRLASILLEETENLDLAETYLEKAILLCERHRLTDLKFRCQFLLARIYFKTNPKA-A  118 (608)
T ss_pred             HHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhcCHHH-H
Confidence            333444444 3334443  335556666665 6788999999998775443222211     2234566666766666 8


Q ss_pred             HHHHHHHHhC----CCCCCHhhHHHH-HHHHhcCCChhHHHHHHHHHhhcCC--CCccHHHHHHHHHHHH--hcCcHHHH
Q 021791          139 EELLGEMVRN----GVSPSAETYNCF-FKEYRGRKDANGAMKLYRQMKEDDL--CVPNIHTYNILIGMFM--ALNRMDMV  209 (307)
Q Consensus       139 ~~~~~~~~~~----~~~~~~~~~~~l-~~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~~l~~~~~--~~~~~~~a  209 (307)
                      ...+++..+.    +..+-...|..+ +..+...++...|.+.++.+.....  ..|...++..++.+..  +.+..+++
T Consensus       119 ~~~l~~~I~~~~~~~~~~w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~~~v~~~l~~~~l~l~~~~~~d~  198 (608)
T PF10345_consen  119 LKNLDKAIEDSETYGHSAWYYAFRLLKIQLALQHKDYNAALENLQSIAQLANQRGDPAVFVLASLSEALLHLRRGSPDDV  198 (608)
T ss_pred             HHHHHHHHHHHhccCchhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhcCCCchhH
Confidence            8888886653    122223334444 3333344799999999988876542  1455555656665554  34556667


Q ss_pred             HHHHHHHhhCC---------CCCCHHhHHHHHHHH--HccCcHHHHHHHHHHHH
Q 021791          210 REIWNHVKGSE---------LGLDLDSYTMLIHGL--CEKQKWKEACQYFVEMI  252 (307)
Q Consensus       210 ~~~~~~~~~~~---------~~~~~~~~~~li~~~--~~~g~~~~a~~~~~~~~  252 (307)
                      .+.++.+....         ..|...+|..+++.+  ...|+++.+...++++.
T Consensus       199 ~~~l~~~~~~~~~~q~~~~~~~~qL~~~~lll~l~~~l~~~~~~~~~~~L~~lq  252 (608)
T PF10345_consen  199 LELLQRAIAQARSLQLDPSVHIPQLKALFLLLDLCCSLQQGDVKNSKQKLKQLQ  252 (608)
T ss_pred             HHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            77666653211         234566777777655  46777777777666553

It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].

>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]

Probab=83.99  E-value=9.8  Score=25.79  Aligned_cols=44  Identities=16%  Similarity=0.306  Sum_probs=25.3

Q ss_pred             HHHHHHHhCCCCCCHhhHHHHHHHHhcCCChhHHHHHHHHHhhc
Q 021791          140 ELLGEMVRNGVSPSAETYNCFFKEYRGRKDANGAMKLYRQMKED  183 (307)
Q Consensus       140 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~  183 (307)
                      +.++.+...++.|++......+++|.+.+++..|.++|+-+...
T Consensus        70 kglN~l~~yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK~K  113 (149)
T KOG4077|consen   70 KGLNNLFDYDLVPSPKVIEAALRACRRVNDFATAVRILEAIKDK  113 (149)
T ss_pred             HHHHhhhccccCCChHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence            33444444555566666666666666666666666666655544

>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]

Probab=83.25  E-value=12  Score=30.36  Aligned_cols=50  Identities=10%  Similarity=-0.064  Sum_probs=24.7

Q ss_pred             HhcCCChhHHHHHHHHHhhcCCCCccHHHHHHHHHHHHhcCcHHHHHHHHHH
Q 021791          164 YRGRKDANGAMKLYRQMKEDDLCVPNIHTYNILIGMFMALNRMDMVREIWNH  215 (307)
Q Consensus       164 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~  215 (307)
                      |.+.|.+++|++.|.......  +-|.+++..-..+|.+...+..|+.=...
T Consensus       107 yFKQgKy~EAIDCYs~~ia~~--P~NpV~~~NRA~AYlk~K~FA~AE~DC~~  156 (536)
T KOG4648|consen  107 YFKQGKYEEAIDCYSTAIAVY--PHNPVYHINRALAYLKQKSFAQAEEDCEA  156 (536)
T ss_pred             hhhccchhHHHHHhhhhhccC--CCCccchhhHHHHHHHHHHHHHHHHhHHH
Confidence            445555555555555544442  22555555555555555555544443333

>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins

Probab=83.15  E-value=21  Score=28.15  Aligned_cols=90  Identities=8%  Similarity=0.129  Sum_probs=65.2

Q ss_pred             HHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHhcCCChhHHHHHHHHHhhcCCCCccHHHHHHHHHHHHh
Q 021791          123 TSVVKCLCSCGRIEDAEELLGEMVRNGVSPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDDLCVPNIHTYNILIGMFMA  202 (307)
Q Consensus       123 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~  202 (307)
                      ..=|.+++..+++.++....-+.-+.--+.........|-.|.+.+++..+.++-..-..... .-+...|..++..|..
T Consensus        87 vvGIQALAEmnrWreVLsWvlqyYq~pEklPpkIleLCILLysKv~Ep~amlev~~~WL~~p~-Nq~lp~y~~vaELyLl  165 (309)
T PF07163_consen   87 VVGIQALAEMNRWREVLSWVLQYYQVPEKLPPKILELCILLYSKVQEPAAMLEVASAWLQDPS-NQSLPEYGTVAELYLL  165 (309)
T ss_pred             hhhHHHHHHHhhHHHHHHHHHHHhcCcccCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhCcc-cCCchhhHHHHHHHHH
Confidence            445788899999999887665554432334556677777889999999999999888776543 3344457777666654


Q ss_pred             -----cCcHHHHHHHH
Q 021791          203 -----LNRMDMVREIW  213 (307)
Q Consensus       203 -----~~~~~~a~~~~  213 (307)
                           .|.+++|+++.
T Consensus       166 ~VLlPLG~~~eAeelv  181 (309)
T PF07163_consen  166 HVLLPLGHFSEAEELV  181 (309)
T ss_pred             HHHhccccHHHHHHHH
Confidence                 69999999887

Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane

>PF13762 MNE1: Mitochondrial splicing apparatus component

Probab=82.63  E-value=14  Score=25.85  Aligned_cols=84  Identities=12%  Similarity=0.151  Sum_probs=58.5

Q ss_pred             HHHHHHHHHHhcCcHHHHHHHHHHHhhCC-----CCCCHHhHHHHHHHHHccCc-HHHHHHHHHHHHHcCCCCcHhhHHH
Q 021791          192 TYNILIGMFMALNRMDMVREIWNHVKGSE-----LGLDLDSYTMLIHGLCEKQK-WKEACQYFVEMIEKGLLPQKVTFET  265 (307)
Q Consensus       192 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-----~~~~~~~~~~li~~~~~~g~-~~~a~~~~~~~~~~~~~p~~~~~~~  265 (307)
                      ..+.++......++......+++.+.-..     -..+...|+.++.+..+..- ---+..+|.-|.+.+.+++..-|..
T Consensus        41 fiN~iL~hl~~~~nf~~~v~~L~~l~~l~~~~~~~~~~~ssf~~if~SlsnSsSaK~~~~~Lf~~Lk~~~~~~t~~dy~~  120 (145)
T PF13762_consen   41 FINCILNHLASYQNFSGVVSILEHLHFLNTDNIIGWLDNSSFHIIFKSLSNSSSAKLTSLTLFNFLKKNDIEFTPSDYSC  120 (145)
T ss_pred             HHHHHHHHHHHccchHHHHHHHHHHHHhhHHHHhhhcccchHHHHHHHHccChHHHHHHHHHHHHHHHcCCCCCHHHHHH
Confidence            34667776677777777777777664221     02355678888888866655 4456777888887788888888999


Q ss_pred             HHHHHhhchh
Q 021791          266 LYRGLIQSDM  275 (307)
Q Consensus       266 l~~~~~~~g~  275 (307)
                      ++.++.+-..
T Consensus       121 li~~~l~g~~  130 (145)
T PF13762_consen  121 LIKAALRGYF  130 (145)
T ss_pred             HHHHHHcCCC
Confidence            9988776533

>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised

Probab=82.30  E-value=8.1  Score=28.58  Aligned_cols=33  Identities=18%  Similarity=0.081  Sum_probs=25.0

Q ss_pred             CCCHHhHHHHHHHHHccCcHHHHHHHHHHHHHc
Q 021791          222 GLDLDSYTMLIHGLCEKQKWKEACQYFVEMIEK  254 (307)
Q Consensus       222 ~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~  254 (307)
                      .|+..+|..++.++...|+.++|..+.+++...
T Consensus       141 ~P~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~l  173 (193)
T PF11846_consen  141 RPDPNVYQRYALALALLGDPEEARQWLARARRL  173 (193)
T ss_pred             CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence            577777777777778888888887777777643

This domain is found in bacteria. This presumed domain is about 200 amino acids in length.

>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]

Probab=81.63  E-value=25  Score=27.98  Aligned_cols=41  Identities=17%  Similarity=0.161  Sum_probs=25.6

Q ss_pred             hhHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCChHHHHHHHH
Q 021791          101 QLSLDKLNFMKEKGICPTVATYTSVVKCLCSCGRIEDAEELLG  143 (307)
Q Consensus       101 ~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~  143 (307)
                      .+|+++|.-+.++.-  -..+-+.++.++-...+..+|...+.
T Consensus       150 ~KA~ELFayLv~hkg--k~v~~~~~ie~lwpe~D~kka~s~lh  190 (361)
T COG3947         150 RKALELFAYLVEHKG--KEVTSWEAIEALWPEKDEKKASSLLH  190 (361)
T ss_pred             hHHHHHHHHHHHhcC--CcccHhHHHHHHccccchhhHHHHHH
Confidence            478888888876632  23344556666666666666665544

>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised

Probab=81.37  E-value=6.7  Score=21.32  Aligned_cols=31  Identities=10%  Similarity=0.093  Sum_probs=17.0

Q ss_pred             ccCcHHHHHHHHHHHHHcCCCCcHhhHHHHH
Q 021791          237 EKQKWKEACQYFVEMIEKGLLPQKVTFETLY  267 (307)
Q Consensus       237 ~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~  267 (307)
                      +.|-..++..++++|.+.|+..+...+..++
T Consensus        14 ~~GlI~~~~~~l~~l~~~g~~is~~l~~~~L   44 (48)
T PF11848_consen   14 RRGLISEVKPLLDRLQQAGFRISPKLIEEIL   44 (48)
T ss_pred             HcCChhhHHHHHHHHHHcCcccCHHHHHHHH
Confidence            3445555555566665555555555555444

This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.

>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=80.94  E-value=20  Score=26.53  Aligned_cols=129  Identities=15%  Similarity=0.155  Sum_probs=86.4

Q ss_pred             HHHHHHHHHHHHhcCCchhHHHHHHHHHHcCCCCchhhH--HHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHhhH----
Q 021791           84 VTSFSIVLHVYSRAHKPQLSLDKLNFMKEKGICPTVATY--TSVVKCLCSCGRIEDAEELLGEMVRNGVSPSAETY----  157 (307)
Q Consensus        84 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~--~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~----  157 (307)
                      ...|..++.... .+.+ +.....+.+........-.++  -.+...+...+++++|+.-++.....   |....+    
T Consensus        54 S~~Y~~~i~~~~-ak~~-~~~~~~ekf~~~n~~t~Ya~laaL~lAk~~ve~~~~d~A~aqL~~~l~~---t~De~lk~l~  128 (207)
T COG2976          54 SAQYQNAIKAVQ-AKKP-KSIAAAEKFVQANGKTIYAVLAALELAKAEVEANNLDKAEAQLKQALAQ---TKDENLKALA  128 (207)
T ss_pred             HHHHHHHHHHHh-cCCc-hhHHHHHHHHhhccccHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHcc---chhHHHHHHH
Confidence            345555555544 3333 555566666655322121222  23456688899999999999987754   222333    


Q ss_pred             -HHHHHHHhcCCChhHHHHHHHHHhhcCCCCccHHHHHHHHHHHHhcCcHHHHHHHHHHHhhCC
Q 021791          158 -NCFFKEYRGRKDANGAMKLYRQMKEDDLCVPNIHTYNILIGMFMALNRMDMVREIWNHVKGSE  220 (307)
Q Consensus       158 -~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~  220 (307)
                       -.|.+.....|.+++|+.+++.....+   ........-.+.+...|+-++|+.-|+.....+
T Consensus       129 ~lRLArvq~q~~k~D~AL~~L~t~~~~~---w~~~~~elrGDill~kg~k~~Ar~ay~kAl~~~  189 (207)
T COG2976         129 ALRLARVQLQQKKADAALKTLDTIKEES---WAAIVAELRGDILLAKGDKQEARAAYEKALESD  189 (207)
T ss_pred             HHHHHHHHHHhhhHHHHHHHHhcccccc---HHHHHHHHhhhHHHHcCchHHHHHHHHHHHHcc
Confidence             345566788999999999999887653   234445566778899999999999999998875

>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane

Probab=80.78  E-value=8.1  Score=23.67  Aligned_cols=46  Identities=13%  Similarity=0.166  Sum_probs=20.4

Q ss_pred             cCCChhHHHHHHHHHhhcCCCCcc-HHHHHHHHHHHHhcCcHHHHHH
Q 021791          166 GRKDANGAMKLYRQMKEDDLCVPN-IHTYNILIGMFMALNRMDMVRE  211 (307)
Q Consensus       166 ~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~  211 (307)
                      ..++.++|+..|....+...-+++ -.++..++++|+..|++.++++
T Consensus        18 ~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~   64 (80)
T PF10579_consen   18 HQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLA   64 (80)
T ss_pred             ccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            444445555555555444221111 2234445555555555554444

Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane

>KOG1258 consensus mRNA processing protein [RNA processing and modification]

Probab=80.51  E-value=40  Score=29.64  Aligned_cols=185  Identities=14%  Similarity=0.015  Sum_probs=112.2

Q ss_pred             cHHHHHHHHHHHHhhCCCCcchhhHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCchhHHHHHHHHHHcCCCC
Q 021791           38 NVVTYNVLLNGVCRRASLHPNERFEKTIRNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHKPQLSLDKLNFMKEKGICP  117 (307)
Q Consensus        38 ~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~  117 (307)
                      +..+|+.-+.--..          .|+.+.+.-+|++..-. +..=...|--.+.-....|+.+.+..++....+...+-
T Consensus       296 ql~nw~~yLdf~i~----------~g~~~~~~~l~ercli~-cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k~  364 (577)
T KOG1258|consen  296 QLKNWRYYLDFEIT----------LGDFSRVFILFERCLIP-CALYDEFWIKYARWMESSGDVSLANNVLARACKIHVKK  364 (577)
T ss_pred             HHHHHHHHhhhhhh----------cccHHHHHHHHHHHHhH-HhhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcCCC
Confidence            45667777776666          67777788888776532 11223345555566666688888888887776665443


Q ss_pred             chhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCH-hhHHHHHHHHhcCCChhHHH---HHHHHHhhcCCCCccHHHH
Q 021791          118 TVATYTSVVKCLCSCGRIEDAEELLGEMVRNGVSPSA-ETYNCFFKEYRGRKDANGAM---KLYRQMKEDDLCVPNIHTY  193 (307)
Q Consensus       118 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~a~---~~~~~~~~~~~~~~~~~~~  193 (307)
                      .+.+.-.-....-..|++..|..+++.+...-  |+. ..-..-+....+.|..+.+.   .++......   .-+....
T Consensus       365 ~~~i~L~~a~f~e~~~n~~~A~~~lq~i~~e~--pg~v~~~l~~~~~e~r~~~~~~~~~~~~l~s~~~~~---~~~~~i~  439 (577)
T KOG1258|consen  365 TPIIHLLEARFEESNGNFDDAKVILQRIESEY--PGLVEVVLRKINWERRKGNLEDANYKNELYSSIYEG---KENNGIL  439 (577)
T ss_pred             CcHHHHHHHHHHHhhccHHHHHHHHHHHHhhC--CchhhhHHHHHhHHHHhcchhhhhHHHHHHHHhccc---ccCcchh
Confidence            33333333333445679999999999988763  443 22233344456777777776   333333332   2222222


Q ss_pred             HHHHHH-----HHhcCcHHHHHHHHHHHhhCCCCCCHHhHHHHHHHHHccC
Q 021791          194 NILIGM-----FMALNRMDMVREIWNHVKGSELGLDLDSYTMLIHGLCEKQ  239 (307)
Q Consensus       194 ~~l~~~-----~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g  239 (307)
                      ..+.--     +...++.+.|..++..+... .+++...|..++......+
T Consensus       440 ~~l~~~~~r~~~~i~~d~~~a~~~l~~~~~~-~~~~k~~~~~~~~~~~~~~  489 (577)
T KOG1258|consen  440 EKLYVKFARLRYKIREDADLARIILLEANDI-LPDCKVLYLELIRFELIQP  489 (577)
T ss_pred             HHHHHHHHHHHHHHhcCHHHHHHHHHHhhhc-CCccHHHHHHHHHHHHhCC
Confidence            222222     23457888999999988876 3556777777777665554

>PHA02875 ankyrin repeat protein; Provisional

Probab=80.50  E-value=34  Score=28.87  Aligned_cols=212  Identities=13%  Similarity=0.125  Sum_probs=98.2

Q ss_pred             HHHHHhcCchhhHHHHHHHHHhcCCCCcHHH--HHHHHHHHHhhCCCCcchhhHHHHHHHHHHHHHHHhcCCCCCHH--H
Q 021791           11 IYGWCKINRIDMAERFLGEMIERGVEPNVVT--YNVLLNGVCRRASLHPNERFEKTIRNAEKVFDEMRVRGIEPDVT--S   86 (307)
Q Consensus        11 i~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~--~~~ll~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~   86 (307)
                      +...+..|+.+-+..+    .+.|..|+...  -.+.+..++.          .++.    ++.+.+.+.|..|+..  .
T Consensus         6 L~~A~~~g~~~iv~~L----l~~g~~~n~~~~~g~tpL~~A~~----------~~~~----~~v~~Ll~~ga~~~~~~~~   67 (413)
T PHA02875          6 LCDAILFGELDIARRL----LDIGINPNFEIYDGISPIKLAMK----------FRDS----EAIKLLMKHGAIPDVKYPD   67 (413)
T ss_pred             HHHHHHhCCHHHHHHH----HHCCCCCCccCCCCCCHHHHHHH----------cCCH----HHHHHHHhCCCCccccCCC
Confidence            3344456776554444    45566655432  2233333444          3333    3444555666555432  1


Q ss_pred             HHHHHHHHHhcCCchhHHHHHHHHHHcCCCCchh---hHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHh---hHHHH
Q 021791           87 FSIVLHVYSRAHKPQLSLDKLNFMKEKGICPTVA---TYTSVVKCLCSCGRIEDAEELLGEMVRNGVSPSAE---TYNCF  160 (307)
Q Consensus        87 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~---~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~---~~~~l  160 (307)
                      ....+...+..|+.+.+..+++    .|...+..   .-.+.+...+..|+.+    +++.+.+.|..|+..   -.+ .
T Consensus        68 ~~t~L~~A~~~g~~~~v~~Ll~----~~~~~~~~~~~~g~tpL~~A~~~~~~~----iv~~Ll~~gad~~~~~~~g~t-p  138 (413)
T PHA02875         68 IESELHDAVEEGDVKAVEELLD----LGKFADDVFYKDGMTPLHLATILKKLD----IMKLLIARGADPDIPNTDKFS-P  138 (413)
T ss_pred             cccHHHHHHHCCCHHHHHHHHH----cCCcccccccCCCCCHHHHHHHhCCHH----HHHHHHhCCCCCCCCCCCCCC-H
Confidence            2234556667788776555543    33221110   1122344445666664    444455556555432   222 3


Q ss_pred             HHHHhcCCChhHHHHHHHHHhhcCCCCccHHHHHHHHHHHHhcCcHHHHHHHHHHHhhCCCCCCHHh---HHHHHHHHHc
Q 021791          161 FKEYRGRKDANGAMKLYRQMKEDDLCVPNIHTYNILIGMFMALNRMDMVREIWNHVKGSELGLDLDS---YTMLIHGLCE  237 (307)
Q Consensus       161 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~---~~~li~~~~~  237 (307)
                      +...+..|+.+-+..+++.-....  ..|..-.+. +...+..|+.+-+..    +.+.|..++...   ....+...+.
T Consensus       139 Lh~A~~~~~~~~v~~Ll~~g~~~~--~~d~~g~Tp-L~~A~~~g~~eiv~~----Ll~~ga~~n~~~~~~~~t~l~~A~~  211 (413)
T PHA02875        139 LHLAVMMGDIKGIELLIDHKACLD--IEDCCGCTP-LIIAMAKGDIAICKM----LLDSGANIDYFGKNGCVAALCYAIE  211 (413)
T ss_pred             HHHHHHcCCHHHHHHHHhcCCCCC--CCCCCCCCH-HHHHHHcCCHHHHHH----HHhCCCCCCcCCCCCCchHHHHHHH
Confidence            334456677665555554322111  122222233 333445676654444    444555554322   1234443445


Q ss_pred             cCcHHHHHHHHHHHHHcCCCCcH
Q 021791          238 KQKWKEACQYFVEMIEKGLLPQK  260 (307)
Q Consensus       238 ~g~~~~a~~~~~~~~~~~~~p~~  260 (307)
                      .|+.+    +.+.+++.|..++.
T Consensus       212 ~~~~~----iv~~Ll~~gad~n~  230 (413)
T PHA02875        212 NNKID----IVRLFIKRGADCNI  230 (413)
T ss_pred             cCCHH----HHHHHHHCCcCcch
Confidence            56553    44555566766654

>smart00028 TPR Tetratricopeptide repeats

Probab=80.47  E-value=4.1  Score=18.61  Aligned_cols=29  Identities=17%  Similarity=0.206  Sum_probs=24.9

Q ss_pred             HHHHHHHHHHHhcCchhhHHHHHHHHHhc
Q 021791            5 KMYTSLIYGWCKINRIDMAERFLGEMIER   33 (307)
Q Consensus         5 ~~~~~li~~~~~~g~~~~a~~~~~~~~~~   33 (307)
                      .+|..+...+...|+++.|...|....+.
T Consensus         2 ~~~~~~a~~~~~~~~~~~a~~~~~~~~~~   30 (34)
T smart00028        2 EALYNLGNAYLKLGDYDEALEYYEKALEL   30 (34)
T ss_pred             hHHHHHHHHHHHHhhHHHHHHHHHHHHcc
Confidence            46778889999999999999999888754

Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.

>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]

Probab=80.44  E-value=15  Score=24.89  Aligned_cols=44  Identities=9%  Similarity=0.064  Sum_probs=21.6

Q ss_pred             HHHHHHHhhCCCCCCHHhHHHHHHHHHccCcHHHHHHHHHHHHH
Q 021791          210 REIWNHVKGSELGLDLDSYTMLIHGLCEKQKWKEACQYFVEMIE  253 (307)
Q Consensus       210 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~  253 (307)
                      .+.++.+...++.|++.....-+++|.+-+++..|..+|+-...
T Consensus        69 rkglN~l~~yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK~  112 (149)
T KOG4077|consen   69 RKGLNNLFDYDLVPSPKVIEAALRACRRVNDFATAVRILEAIKD  112 (149)
T ss_pred             HHHHHhhhccccCCChHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence            33344444444455555555555555555555555555554443

>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins

Probab=80.35  E-value=20  Score=26.15  Aligned_cols=101  Identities=14%  Similarity=0.225  Sum_probs=59.5

Q ss_pred             HHHHHHHHHhcCchhhHHHHHHHHHhc-----CCCCcH-HHHHHHHHHHHhhCCCCcch-hhHHHHHHHHHHHHHHHhcC
Q 021791            7 YTSLIYGWCKINRIDMAERFLGEMIER-----GVEPNV-VTYNVLLNGVCRRASLHPNE-RFEKTIRNAEKVFDEMRVRG   79 (307)
Q Consensus         7 ~~~li~~~~~~g~~~~a~~~~~~~~~~-----~~~p~~-~~~~~ll~~~~~~~~~~~~~-~~~~~~~~a~~~~~~~~~~~   79 (307)
                      |...+.-+++..+..++.+++++.+..     .+.|+. .++..+-.++...+.+.+.. .....+++|...|+...+. 
T Consensus        31 WG~ALLELAqfk~g~es~~miedAisK~eeAL~I~P~~hdAlw~lGnA~ts~A~l~~d~~~A~~~F~kA~~~FqkAv~~-  109 (186)
T PF06552_consen   31 WGGALLELAQFKQGPESKKMIEDAISKFEEALKINPNKHDALWCLGNAYTSLAFLTPDTAEAEEYFEKATEYFQKAVDE-  109 (186)
T ss_dssp             HHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH-
T ss_pred             HHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHhc-
Confidence            334444444445545565666555432     246654 57777777777755433322 2245578888888888776 


Q ss_pred             CCCCHHHHHHHHHHHHhcCCchhHHHHHHHHHHcCC
Q 021791           80 IEPDVTSFSIVLHVYSRAHKPQLSLDKLNFMKEKGI  115 (307)
Q Consensus        80 ~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~  115 (307)
                       .|+..+|+.-+....      +|-++..++.+.+.
T Consensus       110 -~P~ne~Y~ksLe~~~------kap~lh~e~~~~~~  138 (186)
T PF06552_consen  110 -DPNNELYRKSLEMAA------KAPELHMEIHKQGL  138 (186)
T ss_dssp             --TT-HHHHHHHHHHH------THHHHHHHHHHSSS
T ss_pred             -CCCcHHHHHHHHHHH------hhHHHHHHHHHHHh
Confidence             899999999888874      46677777766653

Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.

>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=80.22  E-value=26  Score=27.45  Aligned_cols=175  Identities=12%  Similarity=0.126  Sum_probs=96.8

Q ss_pred             CCCCcHHHHHHHHHHHHhhCCCCcchhhHHHHHHHHHHHHHHHhcCCCCCH---HHHHHHHHHHHhcCCchhHHHHHHHH
Q 021791           34 GVEPNVVTYNVLLNGVCRRASLHPNERFEKTIRNAEKVFDEMRVRGIEPDV---TSFSIVLHVYSRAHKPQLSLDKLNFM  110 (307)
Q Consensus        34 ~~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~ll~~~~~~~~~~~a~~~~~~~  110 (307)
                      +-.||+..-|..-.+-.-.         ....++|+.-|....+..-....   ....-++....+.|++++.+..|.++
T Consensus        21 ~sEpdVDlENQYYnsK~l~---------e~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~ql   91 (440)
T KOG1464|consen   21 NSEPDVDLENQYYNSKGLK---------EDEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQL   91 (440)
T ss_pred             CCCCCcchHhhhhcccccc---------ccCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHH
Confidence            4567766655443322211         45678888888888765212122   23445677888999999998888887


Q ss_pred             HHc---C--CCCchhhHHHHHHHHHhcCChHHHHHHHHHHHh----C-CCCCCHhhHHHHHHHHhcCCChhHHHHHHHHH
Q 021791          111 KEK---G--ICPTVATYTSVVKCLCSCGRIEDAEELLGEMVR----N-GVSPSAETYNCFFKEYRGRKDANGAMKLYRQM  180 (307)
Q Consensus       111 ~~~---~--~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~----~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~  180 (307)
                      ...   .  -..+..+.|.++..-..+.+.+-..+.|+.-.+    . +-+.--.|-..+...|...+++.+...+++++
T Consensus        92 LTYIkSAVTrNySEKsIN~IlDyiStS~~m~LLQ~FYeTTL~ALkdAKNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqL  171 (440)
T KOG1464|consen   92 LTYIKSAVTRNYSEKSINSILDYISTSKNMDLLQEFYETTLDALKDAKNERLWFKTNTKLGKLYFDRGEYTKLQKILKQL  171 (440)
T ss_pred             HHHHHHHHhccccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHhhhcceeeeeccchHhhhheeHHHHHHHHHHHHHH
Confidence            532   1  123455667777665555555444444332221    1 11111122345566677777777777777776


Q ss_pred             hhcCCC---Cc-------cHHHHHHHHHHHHhcCcHHHHHHHHHHHh
Q 021791          181 KEDDLC---VP-------NIHTYNILIGMFMALNRMDMVREIWNHVK  217 (307)
Q Consensus       181 ~~~~~~---~~-------~~~~~~~l~~~~~~~~~~~~a~~~~~~~~  217 (307)
                      .....-   ..       =...|..=++.|....+-..-..++++..
T Consensus       172 h~SCq~edGedD~kKGtQLLEiYAlEIQmYT~qKnNKkLK~lYeqal  218 (440)
T KOG1464|consen  172 HQSCQTEDGEDDQKKGTQLLEIYALEIQMYTEQKNNKKLKALYEQAL  218 (440)
T ss_pred             HHHhccccCchhhhccchhhhhHhhHhhhhhhhcccHHHHHHHHHHH
Confidence            543110   11       12355556666666666666666666544

>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]

Probab=80.11  E-value=51  Score=30.64  Aligned_cols=224  Identities=9%  Similarity=-0.007  Sum_probs=120.7

Q ss_pred             HHHHHHHHHHHHHHHhcCCCCCH-------HHHHHHHHH-HHhcCCchhHHHHHHHHHHc----CCCCchhhHHHHHHHH
Q 021791           62 EKTIRNAEKVFDEMRVRGIEPDV-------TSFSIVLHV-YSRAHKPQLSLDKLNFMKEK----GICPTVATYTSVVKCL  129 (307)
Q Consensus        62 ~~~~~~a~~~~~~~~~~~~~~~~-------~~~~~ll~~-~~~~~~~~~a~~~~~~~~~~----~~~~~~~~~~~ll~~~  129 (307)
                      ..++.+|..++.++...-..|+.       ..|+.|-.. ....|+++++.++-+.....    -..+....+..+..+.
T Consensus       428 ~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~~~a~  507 (894)
T COG2909         428 QHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVALSVLGEAA  507 (894)
T ss_pred             ccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhhhhhhhHHH
Confidence            56778888888877554222221       234444332 34578889998888776554    2334556667777888


Q ss_pred             HhcCChHHHHHHHHHHHhCCCCCCHh---hHHHHH--HHHhcCCCh--hHHHHHHHHHhhc---C--CCCccHHHHHHHH
Q 021791          130 CSCGRIEDAEELLGEMVRNGVSPSAE---TYNCFF--KEYRGRKDA--NGAMKLYRQMKED---D--LCVPNIHTYNILI  197 (307)
Q Consensus       130 ~~~~~~~~a~~~~~~~~~~~~~~~~~---~~~~l~--~~~~~~~~~--~~a~~~~~~~~~~---~--~~~~~~~~~~~l~  197 (307)
                      .-.|++++|..+..+..+..-.-+..   .|..+.  ..+...|+.  .+....+......   .  ...+-..+...++
T Consensus       508 ~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q~~~~~f~~~~r~~ll  587 (894)
T COG2909         508 HIRGELTQALALMQQAEQMARQHDVYHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQKPRHEFLVRIRAQLL  587 (894)
T ss_pred             HHhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHHHHH
Confidence            88999999999888776542222333   333332  234556633  2222223222221   1  1012234455555


Q ss_pred             HHHHhcC-cHHHHHHHHHHHhhCCCCCCHHh--HHHHHHHHHccCcHHHHHHHHHHHHHcCCCC----cHhhHHHHHHH-
Q 021791          198 GMFMALN-RMDMVREIWNHVKGSELGLDLDS--YTMLIHGLCEKQKWKEACQYFVEMIEKGLLP----QKVTFETLYRG-  269 (307)
Q Consensus       198 ~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~--~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p----~~~~~~~l~~~-  269 (307)
                      .++.+.. ...++..-+.--......|-...  +..|++.....|+.++|...+.++......+    +..+-...+.. 
T Consensus       588 ~~~~r~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l~~~~~~~~~~~a~~~~v~~~  667 (894)
T COG2909         588 RAWLRLDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFLRGDLDKALAQLDELERLLLNGQYHVDYLAAAYKVKLI  667 (894)
T ss_pred             HHHHHHhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCchHHHHHHHhhHH
Confidence            5555521 11222222222222222222222  2367788889999999999999987653333    22222223332 


Q ss_pred             -HhhchhHHHHHHHHHH
Q 021791          270 -LIQSDMLRTWRRLKKK  285 (307)
Q Consensus       270 -~~~~g~~~~a~~~~~~  285 (307)
                       -...|+.+.+.....+
T Consensus       668 lwl~qg~~~~a~~~l~~  684 (894)
T COG2909         668 LWLAQGDKELAAEWLLK  684 (894)
T ss_pred             HhcccCCHHHHHHHHHh
Confidence             2456788887777666

>PF14669 Asp_Glu_race_2: Putative aspartate racemase

Probab=80.09  E-value=21  Score=26.31  Aligned_cols=69  Identities=10%  Similarity=0.141  Sum_probs=35.0

Q ss_pred             cCCCCCHHHHHHHHHHHHhcCCchhHHHHHHHH----HHcCCCCc----hhhHHHHHHHHHhcCChHHHHHHHHHHH
Q 021791           78 RGIEPDVTSFSIVLHVYSRAHKPQLSLDKLNFM----KEKGICPT----VATYTSVVKCLCSCGRIEDAEELLGEMV  146 (307)
Q Consensus        78 ~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~----~~~~~~~~----~~~~~~ll~~~~~~~~~~~a~~~~~~~~  146 (307)
                      .|+.++...++.++..+.+..-...-+..+-.+    ...++.++    ......-+..|-..||+.+.-.+|-...
T Consensus         2 AGm~l~~Eh~~yiiklL~qlq~s~qEi~~vl~~KsR~~~~~~~~~~~~~l~~~~~eie~Ckek~DW~klg~ly~nv~   78 (233)
T PF14669_consen    2 AGMVLDPEHFNYIIKLLYQLQASKQEIDAVLEIKSRLQARQFKKNWLSDLASAVVEIEHCKEKGDWTKLGNLYINVK   78 (233)
T ss_pred             CcccCCHHHHHHHHHHHHhhcCchhhhHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHhhhccHHHHhhHHhhHH
Confidence            466778888888877776654433333333333    33333322    2222233344555566665555554443

>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]

Probab=80.04  E-value=20  Score=29.13  Aligned_cols=88  Identities=11%  Similarity=-0.038  Sum_probs=39.4

Q ss_pred             HHHhcCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHhcCCChhHHHHHHHHHhhcCCCCccHHHHHHHHHHHHhcCcHH
Q 021791          128 CLCSCGRIEDAEELLGEMVRNGVSPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDDLCVPNIHTYNILIGMFMALNRMD  207 (307)
Q Consensus       128 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~  207 (307)
                      .|.+.|.+++|...|..-...... +.+++..-..+|.+...+..|..=.......+  ..-...|+.-+.+-...|...
T Consensus       106 ~yFKQgKy~EAIDCYs~~ia~~P~-NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd--~~Y~KAYSRR~~AR~~Lg~~~  182 (536)
T KOG4648|consen  106 TYFKQGKYEEAIDCYSTAIAVYPH-NPVYHINRALAYLKQKSFAQAEEDCEAAIALD--KLYVKAYSRRMQARESLGNNM  182 (536)
T ss_pred             hhhhccchhHHHHHhhhhhccCCC-CccchhhHHHHHHHHHHHHHHHHhHHHHHHhh--HHHHHHHHHHHHHHHHHhhHH
Confidence            355556666666665554443211 44555555555555555554444443333322  112233333333333444444


Q ss_pred             HHHHHHHHHhh
Q 021791          208 MVREIWNHVKG  218 (307)
Q Consensus       208 ~a~~~~~~~~~  218 (307)
                      +|.+=.+....
T Consensus       183 EAKkD~E~vL~  193 (536)
T KOG4648|consen  183 EAKKDCETVLA  193 (536)
T ss_pred             HHHHhHHHHHh
Confidence            44444444433

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	307
3spa_A	1134	Mtrpol, DNA-directed RNA polymerase, mitochondrial	5e-13
3spa_A	1134	Mtrpol, DNA-directed RNA polymerase, mitochondrial	2e-12
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	6e-06
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-04

>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134

 Score = 68.7 bits (166), Expect = 5e-13
 Identities = 23/205 (11%), Positives = 63/205 (30%), Gaps = 5/205 (2%)

Query: 53  ASLHPNERFEKTIRNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHKPQLS---LDKLNF 109
           A L      + ++   +    +     +                  +  L+   L   + 
Sbjct: 96  ARLLQEAPGKLSLDVEQAPSGQHSQAQLSGQQQRLLAFFKCCLLTDQLPLAHHLLVVHHG 155

Query: 110 MKEKGICPTVATYTSVVKCLCSCGRIEDAEELLGEMVRNGVSPSAETYNCFFKEY-RGRK 168
            ++K    T+  Y +V+      G  ++   +L  +   G++P   +Y    +   R  +
Sbjct: 156 QRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAALQCMGRQDQ 215

Query: 169 DANGAMKLYRQMKEDDLCVPNIHTYNILIGMFMALNRMDMVREIWNHVKGSELGLDLDSY 228
           DA    +   QM ++ L +  +    +L+        +  V ++              + 
Sbjct: 216 DAGTIERCLEQMSQEGLKLQAL-FTAVLLSEEDRATVLKAVHKVKPTFSLPPQLPPPVNT 274

Query: 229 TMLIHGLCEKQKWKEACQYFVEMIE 253
           + L+  +  K       +  + +  
Sbjct: 275 SKLLRDVYAKDGRVSYPKLHLPLKT 299

>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134

 Score = 67.1 bits (162), Expect = 2e-12
 Identities = 24/192 (12%), Positives = 61/192 (31%), Gaps = 13/192 (6%)

Query: 1   MPNVKMYTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPNER 60
           +  + MY +++ GW +          L  + + G+ P++++Y   L  + R+        
Sbjct: 162 LLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAALQCMGRQ-------- 213

Query: 61  FEKTIRNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHKPQLSLDKLNFMKEKGICPTVA 120
            ++     E+  ++M   G++      +++L    RA   +               P   
Sbjct: 214 -DQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRATVLKAVHKVKPTFSLPPQLPPPV 272

Query: 121 TYTSVVKCLCSCGRIEDAEELLGEMVRNGVSPSAETYNCFFKEYRGRKDANGAMKLYRQM 180
             + +++ + +    +D      ++     +           E   R       K     
Sbjct: 273 NTSKLLRDVYA----KDGRVSYPKLHLPLKTLQCLFEKQLHMELASRVCVVSVEKPTLPS 328

Query: 181 KEDDLCVPNIHT 192
           KE       + T
Sbjct: 329 KEVKHARKTLKT 340

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 46.8 bits (110), Expect = 6e-06
 Identities = 53/344 (15%), Positives = 117/344 (34%), Gaps = 70/344 (20%)

Query: 1   MPNVKMYTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGV---CRRASLHP 57
             +    T  ++      + +M ++F+ E++      N   Y  L++ +    R+ S+  
Sbjct: 57  SKDAVSGTLRLFWTLLSKQEEMVQKFVEEVL----RIN---YKFLMSPIKTEQRQPSM-M 108

Query: 58  NERFEKT---IRNAEKVFDEMRVRGIEP-----------DVTSFSIVLHVYSRAHKPQLS 103
              + +    + N  +VF +  V  ++P                 +++     + K  ++
Sbjct: 109 TRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKN-VLIDGVLGSGKTWVA 167

Query: 104 LDKLNFMKEKGICPTVATYTSVVKCLCSCGRIEDAEELLGEMVRNGVSPSAETYNCFFKE 163
           LD     K +        + ++  C      +E  ++LL ++  N  S S  + N     
Sbjct: 168 LDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSN----- 222

Query: 164 YRGRKDANGAMKLYRQMKE----------DDLCVPN-IHTYN----ILIGMFMALNRMDM 208
            + R   +   +L R +K            ++      + +N    IL+       R   
Sbjct: 223 IKLRIH-SIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILL-----TTRFKQ 276

Query: 209 VREIWNHVKGSELGLDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYR 268
           V +  +    + + LD  S T+         + K     +++   + L  + +T      
Sbjct: 277 VTDFLSAATTTHISLDHHSMTL------TPDEVKSLLLKYLDCRPQDLPREVLTTNPRRL 330

Query: 269 GLI---QSDMLRTWRRLK----KKLD---EESITF--GSEFQNY 300
            +I     D L TW   K     KL    E S+     +E++  
Sbjct: 331 SIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKM 374

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 42.1 bits (98), Expect = 2e-04
 Identities = 47/369 (12%), Positives = 103/369 (27%), Gaps = 127/369 (34%)

Query: 11  IYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPNERFEKTIRNAEK 70
           I+ W  +   +  E  L EM+++           +      R+    N +          
Sbjct: 184 IF-WLNLKNCNSPETVL-EMLQK-------LLYQIDPNWTSRSDHSSNIK-----LRIHS 229

Query: 71  VFDEMRVRGIEPDVTSFSIVL-HVYSRAHKPQLSLDKLNFMKEKGICPTVAT--YTSVVK 127
           +  E+R         +  +VL +V +         +  N       C  + T  +  V  
Sbjct: 230 IQAELRRLLKSKPYENCLLVLLNVQNAKA-----WNAFNLS-----CKILLTTRFKQVTD 279

Query: 128 CLCSCGRI-------------EDAEELL--------------------------GEMVRN 148
            L +                 ++ + LL                           E +R+
Sbjct: 280 FLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRD 339

Query: 149 GVSPSAETYNCFFKEYRGRK------------DANGAMKLYRQMK--EDDLCVPNIHTYN 194
           G++    T++  +K     K            +     K++ ++        +P     +
Sbjct: 340 GLA----TWD-NWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIP-TILLS 393

Query: 195 ILIGMFMALNRMDMVREIWNHVKGSELGLDLDSYTMLIHGLCEKQKWKEACQYFVEMIEK 254
           ++                W  V  S++ + ++   +  + L EKQ  KE+    +  I  
Sbjct: 394 LI----------------WFDVIKSDVMVVVNK--LHKYSLVEKQ-PKES-TISIPSIYL 433

Query: 255 GLLPQKVTFETLYRGLIQSDMLR----TWRRLKKKLD-----------------EESITF 293
            L  +      L+R ++    +     +   +   LD                 E    F
Sbjct: 434 ELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLF 493

Query: 294 GSEFQNYHF 302
              F ++ F
Sbjct: 494 RMVFLDFRF 502

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	307
4g26_A	501	Pentatricopeptide repeat-containing protein AT2G3	100.0
4g26_A	501	Pentatricopeptide repeat-containing protein AT2G3	100.0
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	99.97
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	99.96
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	99.93
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	99.93
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	99.91
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	99.91
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	99.89
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	99.88
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	99.88
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	99.87
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	99.87
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	99.86
2gw1_A	514	Mitochondrial precursor proteins import receptor;	99.86
3spa_A	1134	Mtrpol, DNA-directed RNA polymerase, mitochondrial	99.86
2gw1_A	514	Mitochondrial precursor proteins import receptor;	99.83
3spa_A	1134	Mtrpol, DNA-directed RNA polymerase, mitochondrial	99.83
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	99.83
3mkr_A	291	Coatomer subunit epsilon; tetratricopeptide repeat	99.83
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	99.82
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	99.82
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	99.82
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	99.82
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	99.8
3mkr_A	291	Coatomer subunit epsilon; tetratricopeptide repeat	99.8
2pl2_A	217	Hypothetical conserved protein TTC0263; TPR, prote	99.79
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	99.78
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	99.77
1b89_A	449	Protein (clathrin heavy chain); triskelion, coated	99.75
2h6f_A	382	Protein farnesyltransferase/geranylgeranyltransfer	99.75
2pl2_A	217	Hypothetical conserved protein TTC0263; TPR, prote	99.75
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	99.74
1xnf_A	275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	99.74
1b89_A	449	Protein (clathrin heavy chain); triskelion, coated	99.74
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	99.74
2vq2_A	225	PILW, putative fimbrial biogenesis and twitching m	99.74
3u4t_A	272	TPR repeat-containing protein; structural genomics	99.73
2vq2_A	225	PILW, putative fimbrial biogenesis and twitching m	99.73
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	99.71
2h6f_A	382	Protein farnesyltransferase/geranylgeranyltransfer	99.71
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	99.71
3u4t_A	272	TPR repeat-containing protein; structural genomics	99.71
1ouv_A	273	Conserved hypothetical secreted protein; TPR repea	99.71
1ouv_A	273	Conserved hypothetical secreted protein; TPR repea	99.7
4abn_A	474	Tetratricopeptide repeat protein 5; P53 cofactor,	99.69
1xnf_A	275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	99.69
4a1s_A	411	PINS, partner of inscuteable; cell cycle, LGN, mit	99.68
3ro2_A	338	PINS homolog, G-protein-signaling modulator 2; TPR	99.65
3vtx_A	184	MAMA; tetratricopeptide repeats (TPR) containing p	99.65
2ond_A	308	Cleavage stimulation factor 77 kDa subunit; HAT do	99.65
2ond_A	308	Cleavage stimulation factor 77 kDa subunit; HAT do	99.65
3sf4_A	406	G-protein-signaling modulator 2; tetratricopeptide	99.65
2xm6_A	490	Protein corresponding to locus C5321 from CFT073 s	99.63
2xm6_A	490	Protein corresponding to locus C5321 from CFT073 s	99.62
3vtx_A	184	MAMA; tetratricopeptide repeats (TPR) containing p	99.62
4g1t_A	472	Interferon-induced protein with tetratricopeptide	99.62
4g1t_A	472	Interferon-induced protein with tetratricopeptide	99.59
3nf1_A	311	KLC 1, kinesin light chain 1; TPR, structural geno	99.59
3nf1_A	311	KLC 1, kinesin light chain 1; TPR, structural geno	99.58
4abn_A	474	Tetratricopeptide repeat protein 5; P53 cofactor,	99.58
2ooe_A	530	Cleavage stimulation factor 77 kDa subunit; HAT do	99.57
2ooe_A	530	Cleavage stimulation factor 77 kDa subunit; HAT do	99.56
1hz4_A	373	MALT regulatory protein; two-helix bundles, helix	99.55
3ulq_A	383	Response regulator aspartate phosphatase F; tetrat	99.54
3as5_A	186	MAMA; tetratricopeptide repeats (TPR) containing p	99.53
3as5_A	186	MAMA; tetratricopeptide repeats (TPR) containing p	99.52
4gyw_A	723	UDP-N-acetylglucosamine--peptide N- acetylglucosam	99.51
3sf4_A	406	G-protein-signaling modulator 2; tetratricopeptide	99.51
3ulq_A	383	Response regulator aspartate phosphatase F; tetrat	99.51
3edt_B	283	KLC 2, kinesin light chain 2; superhelical, struct	99.5
4i17_A	228	Hypothetical protein; TPR repeats protein, structu	99.48
4a1s_A	411	PINS, partner of inscuteable; cell cycle, LGN, mit	99.47
4gyw_A	723	UDP-N-acetylglucosamine--peptide N- acetylglucosam	99.47
3q15_A	378	PSP28, response regulator aspartate phosphatase H;	99.46
4i17_A	228	Hypothetical protein; TPR repeats protein, structu	99.45
1xi4_A	1630	Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle	99.43
3edt_B	283	KLC 2, kinesin light chain 2; superhelical, struct	99.43
1qqe_A	292	Vesicular transport protein SEC17; helix-turn-heli	99.43
3ro2_A	338	PINS homolog, G-protein-signaling modulator 2; TPR	99.43
1xi4_A	1630	Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle	99.41
3q15_A	378	PSP28, response regulator aspartate phosphatase H;	99.38
3e4b_A	452	ALGK; tetratricopeptide repeat, superhelix, algina	99.36
3qky_A	261	Outer membrane assembly lipoprotein YFIO; membrane	99.35
3e4b_A	452	ALGK; tetratricopeptide repeat, superhelix, algina	99.33
3mv2_B	310	Coatomer subunit epsilon; vesicular membrane coat	99.33
2fo7_A	136	Synthetic consensus TPR protein; tetratricopeptide	99.32
2fo7_A	136	Synthetic consensus TPR protein; tetratricopeptide	99.31
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	99.31
1qqe_A	292	Vesicular transport protein SEC17; helix-turn-heli	99.3
1hz4_A	373	MALT regulatory protein; two-helix bundles, helix	99.28
3mv2_B	310	Coatomer subunit epsilon; vesicular membrane coat	99.28
3rjv_A	212	Putative SEL1 repeat protein; alpha-alpha superhel	99.25
3qky_A	261	Outer membrane assembly lipoprotein YFIO; membrane	99.24
3dra_A	306	Protein farnesyltransferase/geranylgeranyltransfer	99.23
2pzi_A	681	Probable serine/threonine-protein kinase PKNG; ATP	99.23
2pzi_A	681	Probable serine/threonine-protein kinase PKNG; ATP	99.22
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	99.21
2yhc_A	225	BAMD, UPF0169 lipoprotein YFIO; essential BAM comp	99.21
3qou_A	287	Protein YBBN; thioredoxin-like fold, tetratricopep	99.2
4ga2_A	150	E3 SUMO-protein ligase ranbp2; TPR motif, nuclear	99.19
2vsy_A	568	XCC0866; transferase, glycosyl transferase, GT-B,	99.18
2r5s_A	176	Uncharacterized protein VP0806; APC090868.1, vibri	99.18
3qou_A	287	Protein YBBN; thioredoxin-like fold, tetratricopep	99.17
2yhc_A	225	BAMD, UPF0169 lipoprotein YFIO; essential BAM comp	99.17
3rjv_A	212	Putative SEL1 repeat protein; alpha-alpha superhel	99.16
4ga2_A	150	E3 SUMO-protein ligase ranbp2; TPR motif, nuclear	99.15
2ifu_A	307	Gamma-SNAP; membrane fusion, snare complex disasse	99.14
2vsy_A	568	XCC0866; transferase, glycosyl transferase, GT-B,	99.14
2r5s_A	176	Uncharacterized protein VP0806; APC090868.1, vibri	99.13
3dra_A	306	Protein farnesyltransferase/geranylgeranyltransfer	99.12
4e6h_A	679	MRNA 3'-END-processing protein RNA14; HAT domain,	99.07
3u3w_A	293	Transcriptional activator PLCR protein; ternary co	99.06
3q7a_A	349	Farnesyltransferase alpha subunit; protein prenylt	99.05
1hh8_A	213	P67PHOX, NCF-2, neutrophil cytosol factor 2; cell	99.03
1hh8_A	213	P67PHOX, NCF-2, neutrophil cytosol factor 2; cell	99.02
2ifu_A	307	Gamma-SNAP; membrane fusion, snare complex disasse	99.02
4e6h_A	679	MRNA 3'-END-processing protein RNA14; HAT domain,	99.0
1a17_A	166	Serine/threonine protein phosphatase 5; hydrolase,	99.0
3u3w_A	293	Transcriptional activator PLCR protein; ternary co	98.99
2c2l_A	281	CHIP, carboxy terminus of HSP70-interacting protei	98.98
2qfc_A	293	PLCR protein; TPR, HTH, transcription regulation;	98.98
1a17_A	166	Serine/threonine protein phosphatase 5; hydrolase,	98.97
2e2e_A	177	Formate-dependent nitrite reductase complex NRFG;	98.95
4gco_A	126	Protein STI-1; structural genomics, PSI-biology, m	98.95
2qfc_A	293	PLCR protein; TPR, HTH, transcription regulation;	98.95
3gyz_A	151	Chaperone protein IPGC; asymmetric homodimer, tetr	98.94
4gco_A	126	Protein STI-1; structural genomics, PSI-biology, m	98.93
1na0_A	125	Designed protein CTPR3; de novo protein; HET: IPT;	98.93
1na0_A	125	Designed protein CTPR3; de novo protein; HET: IPT;	98.91
2lni_A	133	Stress-induced-phosphoprotein 1; structural genomi	98.91
3gw4_A	203	Uncharacterized protein; structural genomics, PSI-	98.91
3gyz_A	151	Chaperone protein IPGC; asymmetric homodimer, tetr	98.9
2lni_A	133	Stress-induced-phosphoprotein 1; structural genomi	98.89
2vyi_A	131	SGTA protein; chaperone, TPR repeat, phosphoprotei	98.88
2e2e_A	177	Formate-dependent nitrite reductase complex NRFG;	98.88
1p5q_A	336	FKBP52, FK506-binding protein 4; isomerase; 2.80A	98.88
3q7a_A	349	Farnesyltransferase alpha subunit; protein prenylt	98.86
2vyi_A	131	SGTA protein; chaperone, TPR repeat, phosphoprotei	98.86
2vgx_A	148	Chaperone SYCD; alternative dimer assembly, tetrat	98.83
1p5q_A	336	FKBP52, FK506-binding protein 4; isomerase; 2.80A	98.83
3gw4_A	203	Uncharacterized protein; structural genomics, PSI-	98.83
2fbn_A	198	70 kDa peptidylprolyl isomerase, putative; sulfur	98.81
2c2l_A	281	CHIP, carboxy terminus of HSP70-interacting protei	98.79
2uy1_A	493	Cleavage stimulation factor 77; RNA-binding protei	98.78
2vgx_A	148	Chaperone SYCD; alternative dimer assembly, tetrat	98.77
1elw_A	118	TPR1-domain of HOP; HOP, TPR-domain, peptide-compl	98.75
4f3v_A	282	ESX-1 secretion system protein ECCA1; tetratricope	98.75
4f3v_A	282	ESX-1 secretion system protein ECCA1; tetratricope	98.75
2fbn_A	198	70 kDa peptidylprolyl isomerase, putative; sulfur	98.75
3dss_A	331	Geranylgeranyl transferase type-2 subunit alpha; p	98.73
1elw_A	118	TPR1-domain of HOP; HOP, TPR-domain, peptide-compl	98.73
3upv_A	126	Heat shock protein STI1; TPR-fold, adaptor protein	98.71
3upv_A	126	Heat shock protein STI1; TPR-fold, adaptor protein	98.7
3sz7_A	164	HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G	98.7
3sz7_A	164	HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G	98.69
3q49_B	137	STIP1 homology and U box-containing protein 1; E3	98.69
2xcb_A	142	PCRH, regulatory protein PCRH; protein transport,	98.69
3dss_A	331	Geranylgeranyl transferase type-2 subunit alpha; p	98.68
2kck_A	112	TPR repeat; tetratricopeptide repeat, structural g	98.67
2xcb_A	142	PCRH, regulatory protein PCRH; protein transport,	98.67
3q49_B	137	STIP1 homology and U box-containing protein 1; E3	98.65
1elr_A	131	TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp	98.65
4gcn_A	127	Protein STI-1; structural genomics, PSI-biology, m	98.64
4gcn_A	127	Protein STI-1; structural genomics, PSI-biology, m	98.64
2kck_A	112	TPR repeat; tetratricopeptide repeat, structural g	98.61
1elr_A	131	TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp	98.6
2uy1_A	493	Cleavage stimulation factor 77; RNA-binding protei	98.6
2dba_A	148	Smooth muscle cell associated protein-1, isoform 2	98.59
4b4t_Q	434	26S proteasome regulatory subunit RPN6; hydrolase,	98.58
2dba_A	148	Smooth muscle cell associated protein-1, isoform 2	98.58
1hxi_A	121	PEX5, peroxisome targeting signal 1 receptor PEX5;	98.53
1hxi_A	121	PEX5, peroxisome targeting signal 1 receptor PEX5;	98.52
4b4t_Q	434	26S proteasome regulatory subunit RPN6; hydrolase,	98.49
3ro3_A	164	PINS homolog, G-protein-signaling modulator 2; asy	98.48
1kt0_A	457	FKBP51, 51 kDa FK506-binding protein; FKBP-like pp	98.47
1wao_1	477	Serine/threonine protein phosphatase 5; hydrolase,	98.45
1kt0_A	457	FKBP51, 51 kDa FK506-binding protein; FKBP-like pp	98.45
3ro3_A	164	PINS homolog, G-protein-signaling modulator 2; asy	98.45
2xev_A	129	YBGF; tetratricopeptide, alpha-helical, metal bind	98.44
1wao_1	477	Serine/threonine protein phosphatase 5; hydrolase,	98.44
1ihg_A	370	Cyclophilin 40; ppiase immunophilin tetratricopept	98.44
2xev_A	129	YBGF; tetratricopeptide, alpha-helical, metal bind	98.44
3k9i_A	117	BH0479 protein; putative protein binding protein,	98.42
1ihg_A	370	Cyclophilin 40; ppiase immunophilin tetratricopept	98.41
3k9i_A	117	BH0479 protein; putative protein binding protein,	98.36
3rkv_A	162	Putative peptidylprolyl isomerase; structural geno	98.35
3rkv_A	162	Putative peptidylprolyl isomerase; structural geno	98.32
2if4_A	338	ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha,	98.28
2if4_A	338	ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha,	98.26
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	98.26
3n71_A	490	Histone lysine methyltransferase SMYD1; heart deve	98.24
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	98.22
2hr2_A	159	Hypothetical protein; alpha-alpha superhelix fold,	98.19
1klx_A	138	Cysteine rich protein B; structural genomics, heli	98.16
2kat_A	115	Uncharacterized protein; NESG, structure, structur	98.14
3n71_A	490	Histone lysine methyltransferase SMYD1; heart deve	98.12
2hr2_A	159	Hypothetical protein; alpha-alpha superhelix fold,	98.08
1klx_A	138	Cysteine rich protein B; structural genomics, heli	98.07
2kat_A	115	Uncharacterized protein; NESG, structure, structur	98.06
2l6j_A	111	TPR repeat-containing protein associated with HSP;	98.06
1na3_A	91	Designed protein CTPR2; de novo protein; HET: IPT;	97.98
2l6j_A	111	TPR repeat-containing protein associated with HSP;	97.97
1na3_A	91	Designed protein CTPR2; de novo protein; HET: IPT;	97.87
3ma5_A	100	Tetratricopeptide repeat domain protein; NESG, str	97.83
3ma5_A	100	Tetratricopeptide repeat domain protein; NESG, str	97.81
1zu2_A	158	Mitochondrial import receptor subunit TOM20-3; TPR	97.8
1zu2_A	158	Mitochondrial import receptor subunit TOM20-3; TPR	97.77
3ly7_A	372	Transcriptional activator CADC; alpha/beta domain,	97.7
3ly7_A	372	Transcriptional activator CADC; alpha/beta domain,	97.69
2kc7_A	99	BFR218_protein; tetratricopeptide repeat, all-alph	97.23
3qww_A	433	SET and MYND domain-containing protein 2; methyltr	97.19
2kc7_A	99	BFR218_protein; tetratricopeptide repeat, all-alph	97.18
3qwp_A	429	SET and MYND domain-containing protein 3; SMYD3,SE	97.17
1wy6_A	172	Hypothetical protein ST1625; helical repeat protei	97.12
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	97.09
3qww_A	433	SET and MYND domain-containing protein 2; methyltr	97.09
3bee_A	93	Putative YFRE protein; putaive YFRE protein, struc	97.08
3qwp_A	429	SET and MYND domain-containing protein 3; SMYD3,SE	97.03
3bee_A	93	Putative YFRE protein; putaive YFRE protein, struc	96.99
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	96.99
3u64_A	301	Protein TP_0956; tetratrico peptide repeat, protei	96.89
1pc2_A	152	Mitochondria fission protein; unknown function; NM	96.85
2v5f_A	104	Prolyl 4-hydroxylase subunit alpha-1; endoplasmic	96.77
1wy6_A	172	Hypothetical protein ST1625; helical repeat protei	96.76
2v5f_A	104	Prolyl 4-hydroxylase subunit alpha-1; endoplasmic	96.5
3u64_A	301	Protein TP_0956; tetratrico peptide repeat, protei	96.48
3mkq_B	177	Coatomer subunit alpha; beta-propeller, alpha-sole	96.47
1pc2_A	152	Mitochondria fission protein; unknown function; NM	96.46
4h7y_A	161	Dual specificity protein kinase TTK; mitotic check	96.3
4h7y_A	161	Dual specificity protein kinase TTK; mitotic check	96.25
3mkq_B	177	Coatomer subunit alpha; beta-propeller, alpha-sole	96.15
1nzn_A	126	CGI-135 protein, fission protein FIS1P; TPR, unkno	95.66
1nzn_A	126	CGI-135 protein, fission protein FIS1P; TPR, unkno	95.61
2ff4_A	388	Probable regulatory protein EMBR; winged-helix, te	95.3
4gns_B	754	Protein CSD3, chitin biosynthesis protein CHS6; FN	95.15
4gns_B	754	Protein CSD3, chitin biosynthesis protein CHS6; FN	95.07
4ady_A	963	RPN2, 26S proteasome regulatory subunit RPN2; prot	94.6
1v54_E	109	Cytochrome C oxidase polypeptide VA; oxidoreductas	94.45
4ady_A	963	RPN2, 26S proteasome regulatory subunit RPN2; prot	94.36
2ff4_A	388	Probable regulatory protein EMBR; winged-helix, te	94.18
2y69_E	152	Cytochrome C oxidase subunit 5A; electron transpor	93.25
4fhn_B	1139	Nucleoporin NUP120; protein complex,structural pro	92.58
4b4t_P	445	26S proteasome regulatory subunit RPN5; hydrolase,	92.34
3o48_A	134	Mitochondria fission 1 protein; tetratricopeptide	92.12
3o48_A	134	Mitochondria fission 1 protein; tetratricopeptide	91.79
1v54_E	109	Cytochrome C oxidase polypeptide VA; oxidoreductas	91.68
3lpz_A	336	GET4 (YOR164C homolog); protein targeting, tail-an	91.02
4b4t_R	429	RPN7, 26S proteasome regulatory subunit RPN7; hydr	90.93
4fhn_B	1139	Nucleoporin NUP120; protein complex,structural pro	90.53
3lvg_A	624	Clathrin heavy chain 1; SELF assembly, coated PIT,	90.38
2y69_E	152	Cytochrome C oxidase subunit 5A; electron transpor	90.13
3txn_A	394	26S proteasome regulatory complex subunit P42B; PC	89.96
3ffl_A	167	Anaphase-promoting complex subunit 7; tetratricope	89.29
4b4t_P	445	26S proteasome regulatory subunit RPN5; hydrolase,	88.56
3ffl_A	167	Anaphase-promoting complex subunit 7; tetratricope	88.12
1y8m_A	144	FIS1; mitochondria, unknown function; NMR {Sacchar	87.52
4b4t_R	429	RPN7, 26S proteasome regulatory subunit RPN7; hydr	87.48
1y8m_A	144	FIS1; mitochondria, unknown function; NMR {Sacchar	87.21
3esl_A	202	Checkpoint serine/threonine-protein kinase BUB1; m	86.26
1zbp_A	273	Hypothetical protein VPA1032; alpha-beta protein,	86.0
2wpv_A	312	GET4, UPF0363 protein YOR164C; golgi-ER traffickin	85.5
1zbp_A	273	Hypothetical protein VPA1032; alpha-beta protein,	84.08
3txn_A	394	26S proteasome regulatory complex subunit P42B; PC	84.04
3esl_A	202	Checkpoint serine/threonine-protein kinase BUB1; m	83.86
3lvg_A	624	Clathrin heavy chain 1; SELF assembly, coated PIT,	83.16
2uwj_G	115	Type III export protein PSCG; virulence, chaperone	81.29
2p58_C	116	Putative type III secretion protein YSCG; type III	80.65

>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A

Probab=100.00  E-value=4.8e-36  Score=251.29  Aligned_cols=197  Identities=19%  Similarity=0.271  Sum_probs=187.1

Q ss_pred             HHHHHHHHHHHhcCchhhHHHHHHHHHhcCCCCcHHHHHHHHHHHHhhCCCCcchhhHHHHHHHHHHHHHHHhcCCCCCH
Q 021791            5 KMYTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPNERFEKTIRNAEKVFDEMRVRGIEPDV   84 (307)
Q Consensus         5 ~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~   84 (307)
                      .+++.+|.+|++.|++++|+++|++|.+.|++||..||++||.+|++.+....... .+.+++|.++|++|...|+.||.
T Consensus        27 ~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~-~~~l~~A~~lf~~M~~~G~~Pd~  105 (501)
T 4g26_A           27 ALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSP-NPGLSRGFDIFKQMIVDKVVPNE  105 (501)
T ss_dssp             HHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSC-CHHHHHHHHHHHHHHHTTCCCCH
T ss_pred             HHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhh-cchHHHHHHHHHHHHHhCCCCCH
Confidence            46888999999999999999999999999999999999999999998766544332 57889999999999999999999


Q ss_pred             HHHHHHHHHHHhcCCchhHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHH
Q 021791           85 TSFSIVLHVYSRAHKPQLSLDKLNFMKEKGICPTVATYTSVVKCLCSCGRIEDAEELLGEMVRNGVSPSAETYNCFFKEY  164 (307)
Q Consensus        85 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~  164 (307)
                      .||++||.+|++.|++++|.++|++|.+.|+.||..+|+.+|.+|++.|++++|.++|++|.+.|+.||..+|+.||.+|
T Consensus       106 ~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~~~  185 (501)
T 4g26_A          106 ATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVESEVVPEEPELAALLKVS  185 (501)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hcCCChhHHHHHHHHHhhcCCCCccHHHHHHHHHHHHhc
Q 021791          165 RGRKDANGAMKLYRQMKEDDLCVPNIHTYNILIGMFMAL  203 (307)
Q Consensus       165 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  203 (307)
                      ++.|+.++|.+++++|.+.+. .|+..||+.++..|...
T Consensus       186 ~~~g~~d~A~~ll~~Mr~~g~-~ps~~T~~~l~~~F~s~  223 (501)
T 4g26_A          186 MDTKNADKVYKTLQRLRDLVR-QVSKSTFDMIEEWFKSE  223 (501)
T ss_dssp             HHTTCHHHHHHHHHHHHHHTS-SBCHHHHHHHHHHHHSH
T ss_pred             hhCCCHHHHHHHHHHHHHhCC-CcCHHHHHHHHHHHhcC
Confidence            999999999999999999997 99999999999998864

>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A

Probab=100.00  E-value=4.9e-36  Score=251.23  Aligned_cols=208  Identities=13%  Similarity=0.150  Sum_probs=183.1

Q ss_pred             HHHHHHHHHHHhcCCCCCH-HHHHHHHHHHHhcCCchhHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCC---------h
Q 021791           66 RNAEKVFDEMRVRGIEPDV-TSFSIVLHVYSRAHKPQLSLDKLNFMKEKGICPTVATYTSVVKCLCSCGR---------I  135 (307)
Q Consensus        66 ~~a~~~~~~~~~~~~~~~~-~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~---------~  135 (307)
                      ..+..+.+++.+.+..+.+ ..++.+|.+|++.|++++|+++|++|.+.|+.||..||+.||.+|++.+.         +
T Consensus         7 s~~e~L~~~~~~k~~~~spe~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l   86 (501)
T 4g26_A            7 SPSENLSRKAKKKAIQQSPEALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGL   86 (501)
T ss_dssp             -----------------CHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHH
T ss_pred             chHHHHHHHHHHhcccCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchH
Confidence            4456666777777765544 46889999999999999999999999999999999999999999997765         6


Q ss_pred             HHHHHHHHHHHhCCCCCCHhhHHHHHHHHhcCCChhHHHHHHHHHhhcCCCCccHHHHHHHHHHHHhcCcHHHHHHHHHH
Q 021791          136 EDAEELLGEMVRNGVSPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDDLCVPNIHTYNILIGMFMALNRMDMVREIWNH  215 (307)
Q Consensus       136 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~  215 (307)
                      +.|.++|++|...|+.||..+|+.+|.+|++.|++++|.++|++|.+.+. .||..+|+.+|.+|++.|++++|.++|++
T Consensus        87 ~~A~~lf~~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~-~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~  165 (501)
T 4g26_A           87 SRGFDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGI-QPRLRSYGPALFGFCRKGDADKAYEVDAH  165 (501)
T ss_dssp             HHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CCccceehHHHHHHHHCCCHHHHHHHHHH
Confidence            88999999999999999999999999999999999999999999999997 99999999999999999999999999999


Q ss_pred             HhhCCCCCCHHhHHHHHHHHHccCcHHHHHHHHHHHHHcCCCCcHhhHHHHHHHHhhch
Q 021791          216 VKGSELGLDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQSD  274 (307)
Q Consensus       216 ~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g  274 (307)
                      |.+.|+.||..+|+.||.+|++.|++++|.+++++|.+.|..|+..||+.++..|...+
T Consensus       166 M~~~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s~~  224 (501)
T 4g26_A          166 MVESEVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKSEV  224 (501)
T ss_dssp             HHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHSHH
T ss_pred             HHhcCCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhcCc
Confidence            99999999999999999999999999999999999999999999999999999887654

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}

Probab=99.97  E-value=9.9e-28  Score=207.60  Aligned_cols=273  Identities=8%  Similarity=-0.081  Sum_probs=245.8

Q ss_pred             ccHHHHHHHHHHHHhcCchhhHHHHHHHHHhcCCCCcHHHHHHHHHHHHhhCCCCcchhhHHHHHHHHHHHHHHHhcCCC
Q 021791            2 PNVKMYTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPNERFEKTIRNAEKVFDEMRVRGIE   81 (307)
Q Consensus         2 p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~   81 (307)
                      +|+.+|+.++..|.+.|++++|.++|+++.+.+ +.+..++..++.++.+          .|++++|.++++++.+.. +
T Consensus       303 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~----------~g~~~~A~~~~~~~~~~~-~  370 (597)
T 2xpi_A          303 KSSDLLLCKADTLFVRSRFIDVLAITTKILEID-PYNLDVYPLHLASLHE----------SGEKNKLYLISNDLVDRH-P  370 (597)
T ss_dssp             GCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCCTTHHHHHHHHHH----------HTCHHHHHHHHHHHHHHC-T
T ss_pred             chHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcC-cccHHHHHHHHHHHHH----------hCCHHHHHHHHHHHHhhC-c
Confidence            578999999999999999999999999998775 3377889999999999          888999999999998663 5


Q ss_pred             CCHHHHHHHHHHHHhcCCchhHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHhhHHHHH
Q 021791           82 PDVTSFSIVLHVYSRAHKPQLSLDKLNFMKEKGICPTVATYTSVVKCLCSCGRIEDAEELLGEMVRNGVSPSAETYNCFF  161 (307)
Q Consensus        82 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~  161 (307)
                      .+..+++.++..|.+.|++++|.++|+++.+... .+..+|+.++.+|.+.|++++|.++|+++.+.+. .+..+|+.++
T Consensus       371 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~l~  448 (597)
T 2xpi_A          371 EKAVTWLAVGIYYLCVNKISEARRYFSKSSTMDP-QFGPAWIGFAHSFAIEGEHDQAISAYTTAARLFQ-GTHLPYLFLG  448 (597)
T ss_dssp             TSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTT-TCSHHHHHHH
T ss_pred             ccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc-cchHHHHHHH
Confidence            5788999999999999999999999999988643 3688999999999999999999999999998754 3788999999


Q ss_pred             HHHhcCCChhHHHHHHHHHhhcCCCCccHHHHHHHHHHHHhcCcHHHHHHHHHHHhhC----CCCCC--HHhHHHHHHHH
Q 021791          162 KEYRGRKDANGAMKLYRQMKEDDLCVPNIHTYNILIGMFMALNRMDMVREIWNHVKGS----ELGLD--LDSYTMLIHGL  235 (307)
Q Consensus       162 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~~--~~~~~~li~~~  235 (307)
                      .+|.+.|++++|.++|+++.+..  +.+..+|+.++..|.+.|++++|.++|+++.+.    +..|+  ..+|..++.+|
T Consensus       449 ~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~  526 (597)
T 2xpi_A          449 MQHMQLGNILLANEYLQSSYALF--QYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAY  526 (597)
T ss_dssp             HHHHHHTCHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHH
T ss_pred             HHHHHcCCHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHH
Confidence            99999999999999999999875  668899999999999999999999999999875    56777  78999999999


Q ss_pred             HccCcHHHHHHHHHHHHHcCCCCcHhhHHHHHHHHhhchhHHHHHHHHHHhhhcCC
Q 021791          236 CEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDEESI  291 (307)
Q Consensus       236 ~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~  291 (307)
                      .+.|++++|..+|+++.+.+ +.+..+|..+..+|...|++++|.+.++++.+...
T Consensus       527 ~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p  581 (597)
T 2xpi_A          527 RKLKMYDAAIDALNQGLLLS-TNDANVHTAIALVYLHKKIPGLAITHLHESLAISP  581 (597)
T ss_dssp             HHTTCHHHHHHHHHHHHHHS-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred             HHhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCC
Confidence            99999999999999999875 44788999999999999999999999999877543

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}

Probab=99.96  E-value=4.2e-27  Score=203.69  Aligned_cols=271  Identities=13%  Similarity=0.015  Sum_probs=183.3

Q ss_pred             cHHHHHHHHHHHHhcCchhhHHHHHHHHHhcCCCCcHHHHHHHH------------------------------------
Q 021791            3 NVKMYTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLL------------------------------------   46 (307)
Q Consensus         3 ~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll------------------------------------   46 (307)
                      ++.+|+.++.+|.+.|++++|.++|++|.+.+.. +...+..+.                                    
T Consensus       199 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~  277 (597)
T 2xpi_A          199 EASMCYLRGQVYTNLSNFDRAKECYKEALMVDAK-CYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYML  277 (597)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHT
T ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCch-hhHHHHHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHH
Confidence            5789999999999999999999999999876321 233333322                                    


Q ss_pred             --HHHHhhCCCCcchhhHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCchhHHHHHHHHHHcCC---------
Q 021791           47 --NGVCRRASLHPNERFEKTIRNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHKPQLSLDKLNFMKEKGI---------  115 (307)
Q Consensus        47 --~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~---------  115 (307)
                        ..|.+          .|++++|.++|+++.+.  +++..+++.++.+|.+.|++++|.++|+++.+.+.         
T Consensus       278 ~~~~~~~----------~g~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l  345 (597)
T 2xpi_A          278 KLNKTSH----------EDELRRAEDYLSSINGL--EKSSDLLLCKADTLFVRSRFIDVLAITTKILEIDPYNLDVYPLH  345 (597)
T ss_dssp             TSCTTTT----------HHHHHHHHHHHHTSTTG--GGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCCTTHHHH
T ss_pred             HHHHHcC----------cchHHHHHHHHHHhhcC--CchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcCcccHHHHHHH
Confidence              12222          66777777777776654  46777777777777777777777777777765432         


Q ss_pred             ------------------------CCchhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHhcCCChh
Q 021791          116 ------------------------CPTVATYTSVVKCLCSCGRIEDAEELLGEMVRNGVSPSAETYNCFFKEYRGRKDAN  171 (307)
Q Consensus       116 ------------------------~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~  171 (307)
                                              +.+..+++.++..|.+.|++++|.++|+++.+... .+..+|+.++..|.+.|+++
T Consensus       346 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~  424 (597)
T 2xpi_A          346 LASLHESGEKNKLYLISNDLVDRHPEKAVTWLAVGIYYLCVNKISEARRYFSKSSTMDP-QFGPAWIGFAHSFAIEGEHD  424 (597)
T ss_dssp             HHHHHHHTCHHHHHHHHHHHHHHCTTSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHH
T ss_pred             HHHHHHhCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHH
Confidence                                    22455566666666666666666666666665432 24566666667777777777


Q ss_pred             HHHHHHHHHhhcCCCCccHHHHHHHHHHHHhcCcHHHHHHHHHHHhhCCCCCCHHhHHHHHHHHHccCcHHHHHHHHHHH
Q 021791          172 GAMKLYRQMKEDDLCVPNIHTYNILIGMFMALNRMDMVREIWNHVKGSELGLDLDSYTMLIHGLCEKQKWKEACQYFVEM  251 (307)
Q Consensus       172 ~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~  251 (307)
                      +|.++|+++.+..  +.+..+|..++.+|.+.|++++|.++|+.+.+.. +.+..+|+.++..|.+.|++++|..+|+++
T Consensus       425 ~A~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~  501 (597)
T 2xpi_A          425 QAISAYTTAARLF--QGTHLPYLFLGMQHMQLGNILLANEYLQSSYALF-QYDPLLLNELGVVAFNKSDMQTAINHFQNA  501 (597)
T ss_dssp             HHHHHHHHHHHTT--TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhC--ccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence            7777777666554  4566667777777777777777777777766553 235667777777777777777777777777


Q ss_pred             HHc----CCCCc--HhhHHHHHHHHhhchhHHHHHHHHHHhhhcC
Q 021791          252 IEK----GLLPQ--KVTFETLYRGLIQSDMLRTWRRLKKKLDEES  290 (307)
Q Consensus       252 ~~~----~~~p~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~  290 (307)
                      .+.    +..|+  ..+|..+..+|.+.|++++|.++++++.+.+
T Consensus       502 ~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~  546 (597)
T 2xpi_A          502 LLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLS  546 (597)
T ss_dssp             HHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred             HHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC
Confidence            665    55666  5677777777777777777777777766544

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1

Probab=99.93  E-value=2.2e-22  Score=165.14  Aligned_cols=279  Identities=12%  Similarity=0.021  Sum_probs=178.8

Q ss_pred             cHHHHHHHHHHHHhcCchhhHHHHHHHHHhcCCCCcHHHHHHHHHHHHhhCCCCcchhh---------------------
Q 021791            3 NVKMYTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPNERF---------------------   61 (307)
Q Consensus         3 ~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~~---------------------   61 (307)
                      +..+|..+...+.+.|++++|.+.|+++.+.. +.+..+|..+..++...|++..+...                     
T Consensus        66 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~  144 (388)
T 1w3b_A           66 LAEAYSNLGNVYKERGQLQEAIEHYRHALRLK-PDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNL  144 (388)
T ss_dssp             CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCTTCTHHHHHHHHH
T ss_pred             chHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHH
Confidence            45677788888888888888888888877652 22445677777777775554433221                     


Q ss_pred             ---HHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCchhHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCChHHH
Q 021791           62 ---EKTIRNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHKPQLSLDKLNFMKEKGICPTVATYTSVVKCLCSCGRIEDA  138 (307)
Q Consensus        62 ---~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a  138 (307)
                         .|++++|.+.|+++.+.. +.+..+|..+...+...|++++|...|+++.+.+.. +...+..+...+...|++++|
T Consensus       145 ~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~~~~~~A  222 (388)
T 1w3b_A          145 LKALGRLEEAKACYLKAIETQ-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPN-FLDAYINLGNVLKEARIFDRA  222 (388)
T ss_dssp             HHTTSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTTTCTTHH
T ss_pred             HHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-cHHHHHHHHHHHHHcCCHHHH
Confidence               245555666666655542 224555666666666666666666666666555322 445556666666666666666


Q ss_pred             HHHHHHHHhCCCCCCHhhHHHHHHHHhcCCChhHHHHHHHHHhhcCCCCccHHHHHHHHHHHHhcCcHHHHHHHHHHHhh
Q 021791          139 EELLGEMVRNGVSPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDDLCVPNIHTYNILIGMFMALNRMDMVREIWNHVKG  218 (307)
Q Consensus       139 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~  218 (307)
                      ...+++.....+. +..++..+...+...|++++|...++++.+..  +.+..++..+...+.+.|++++|.+.++.+.+
T Consensus       223 ~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~  299 (388)
T 1w3b_A          223 VAAYLRALSLSPN-HAVVHGNLACVYYEQGLIDLAIDTYRRAIELQ--PHFPDAYCNLANALKEKGSVAEAEDCYNTALR  299 (388)
T ss_dssp             HHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC--SSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhhCcC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence            6666666554322 45666667777777777777777777776654  44556677777777777777777777777766


Q ss_pred             CCCCCCHHhHHHHHHHHHccCcHHHHHHHHHHHHHcCCCCcHhhHHHHHHHHhhchhHHHHHHHHHHhhhc
Q 021791          219 SELGLDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDEE  289 (307)
Q Consensus       219 ~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~  289 (307)
                      .. +.+..++..+...+...|++++|...++++.+. .+.+..++..+...+.+.|++++|...++++.+.
T Consensus       300 ~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~-~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~  368 (388)
T 1w3b_A          300 LC-PTHADSLNNLANIKREQGNIEEAVRLYRKALEV-FPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRI  368 (388)
T ss_dssp             HC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTS-CTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTT
T ss_pred             hC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc-CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence            53 336667777777777777777777777777654 2334556677777777777777777777776653

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1

Probab=99.93  E-value=3.5e-22  Score=163.86  Aligned_cols=250  Identities=12%  Similarity=0.020  Sum_probs=202.6

Q ss_pred             HHHHHHHHHHhcCchhhHHHHHHHHHhcCCCCcHHHHHHHHHHHHhhCCCCcchhhHHHHHHHHHHHHHHHhcCCCCCHH
Q 021791            6 MYTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPNERFEKTIRNAEKVFDEMRVRGIEPDVT   85 (307)
Q Consensus         6 ~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~   85 (307)
                      .+..+...+...|++++|.+.|+++.+.. +-+..+|..+...+..          .|++++|...|+++.+.+ +.+..
T Consensus       137 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~----------~g~~~~A~~~~~~al~~~-p~~~~  204 (388)
T 1w3b_A          137 VRSDLGNLLKALGRLEEAKACYLKAIETQ-PNFAVAWSNLGCVFNA----------QGEIWLAIHHFEKAVTLD-PNFLD  204 (388)
T ss_dssp             HHHHHHHHHHTTSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHT----------TTCHHHHHHHHHHHHHHC-TTCHH
T ss_pred             HHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHH----------cCCHHHHHHHHHHHHhcC-CCcHH
Confidence            44445555555666666666666665542 1234566666666666          778899999999999874 34678


Q ss_pred             HHHHHHHHHHhcCCchhHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHh
Q 021791           86 SFSIVLHVYSRAHKPQLSLDKLNFMKEKGICPTVATYTSVVKCLCSCGRIEDAEELLGEMVRNGVSPSAETYNCFFKEYR  165 (307)
Q Consensus        86 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~  165 (307)
                      .+..+...+...|++++|...+++..+.... +..++..+...|.+.|++++|...|+++.+.+.. +..++..+...+.
T Consensus       205 ~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~  282 (388)
T 1w3b_A          205 AYINLGNVLKEARIFDRAVAAYLRALSLSPN-HAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPH-FPDAYCNLANALK  282 (388)
T ss_dssp             HHHHHHHHHHTTTCTTHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSS-CHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhhCcC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-CHHHHHHHHHHHH
Confidence            8999999999999999999999999887533 6788999999999999999999999999987543 6788999999999


Q ss_pred             cCCChhHHHHHHHHHhhcCCCCccHHHHHHHHHHHHhcCcHHHHHHHHHHHhhCCCCCCHHhHHHHHHHHHccCcHHHHH
Q 021791          166 GRKDANGAMKLYRQMKEDDLCVPNIHTYNILIGMFMALNRMDMVREIWNHVKGSELGLDLDSYTMLIHGLCEKQKWKEAC  245 (307)
Q Consensus       166 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~  245 (307)
                      +.|++++|...++++.+..  +.+..++..+...+...|++++|.+.++++.+.. +.+..++..+..++.+.|++++|.
T Consensus       283 ~~g~~~~A~~~~~~al~~~--p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~  359 (388)
T 1w3b_A          283 EKGSVAEAEDCYNTALRLC--PTHADSLNNLANIKREQGNIEEAVRLYRKALEVF-PEFAAAHSNLASVLQQQGKLQEAL  359 (388)
T ss_dssp             HHSCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSC-TTCHHHHHHHHHHHHTTTCCHHHH
T ss_pred             HcCCHHHHHHHHHHHHhhC--cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHH
Confidence            9999999999999999885  6788999999999999999999999999998863 346788999999999999999999


Q ss_pred             HHHHHHHHcCCCCc-HhhHHHHHHHHhhch
Q 021791          246 QYFVEMIEKGLLPQ-KVTFETLYRGLIQSD  274 (307)
Q Consensus       246 ~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g  274 (307)
                      ..|+++++.  .|+ ...+..+...+...|
T Consensus       360 ~~~~~a~~~--~p~~~~a~~~lg~~~~~~~  387 (388)
T 1w3b_A          360 MHYKEAIRI--SPTFADAYSNMGNTLKEMQ  387 (388)
T ss_dssp             HHHHHHHTT--CTTCHHHHHHHHHHHHHTC
T ss_pred             HHHHHHHhh--CCCCHHHHHhHHHHHHHcc
Confidence            999999964  443 445555555554433

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A

Probab=99.91  E-value=3.3e-21  Score=161.03  Aligned_cols=268  Identities=10%  Similarity=0.003  Sum_probs=143.0

Q ss_pred             cHHHHHHHHHHHHhcCchhhHHHHHHHHHhcCCCCcHHHHHHHHHHHHhhCCCCcchhhHHHHHHHHHHHHHHHhcCCCC
Q 021791            3 NVKMYTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPNERFEKTIRNAEKVFDEMRVRGIEP   82 (307)
Q Consensus         3 ~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~   82 (307)
                      ++..|..+...+.+.|++++|.++|+++.+.. +.+...|..+..++..          .|++++|...|+++.+.+ +.
T Consensus        25 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~----------~g~~~~A~~~~~~al~~~-p~   92 (450)
T 2y4t_A           25 DVEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLA----------MGKSKAALPDLTKVIQLK-MD   92 (450)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH----------TTCHHHHHHHHHHHHHHC-TT
T ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHH----------CCCHHHHHHHHHHHHhcC-CC
Confidence            45666777777777777777777777776542 3356666667767766          555566666666665553 22


Q ss_pred             CHHHHHHHHHHHHhcCCchhHHHHHHHHHHcCCC----------------------------------------------
Q 021791           83 DVTSFSIVLHVYSRAHKPQLSLDKLNFMKEKGIC----------------------------------------------  116 (307)
Q Consensus        83 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~----------------------------------------------  116 (307)
                      +...+..+..++.+.|++++|.+.|+.+.+....                                              
T Consensus        93 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~  172 (450)
T 2y4t_A           93 FTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEV  172 (450)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence            4555556666666666666666666665554221                                              


Q ss_pred             --CchhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHhcCCChhHHHHHHHHHhhcCCCCccHHHHH
Q 021791          117 --PTVATYTSVVKCLCSCGRIEDAEELLGEMVRNGVSPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDDLCVPNIHTYN  194 (307)
Q Consensus       117 --~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~  194 (307)
                        .+..++..+..+|.+.|++++|..+|+++..... .+..++..+...|...|++++|...|+++....  +.+...+.
T Consensus       173 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--p~~~~~~~  249 (450)
T 2y4t_A          173 CVWDAELRELRAECFIKEGEPRKAISDLKAASKLKN-DNTEAFYKISTLYYQLGDHELSLSEVRECLKLD--QDHKRCFA  249 (450)
T ss_dssp             CTTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHC-SCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHH
T ss_pred             CCCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CChHHHHH
Confidence              1333344444444444444444444444443321 134444445555555555555555555544432  22233333


Q ss_pred             HH------------HHHHHhcCcHHHHHHHHHHHhhCCCCCC-----HHhHHHHHHHHHccCcHHHHHHHHHHHHHcCCC
Q 021791          195 IL------------IGMFMALNRMDMVREIWNHVKGSELGLD-----LDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLL  257 (307)
Q Consensus       195 ~l------------~~~~~~~~~~~~a~~~~~~~~~~~~~~~-----~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~  257 (307)
                      .+            ...+...|++++|...++.+...  .|+     ...+..+..++.+.|++++|...++++.+.. +
T Consensus       250 ~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~--~p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~-p  326 (450)
T 2y4t_A          250 HYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKT--EPSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQME-P  326 (450)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CCSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-T
T ss_pred             HHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-c
Confidence            22            44455555555555555555443  222     2245555555556666666666666655441 2


Q ss_pred             CcHhhHHHHHHHHhhchhHHHHHHHHHHhhh
Q 021791          258 PQKVTFETLYRGLIQSDMLRTWRRLKKKLDE  288 (307)
Q Consensus       258 p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~  288 (307)
                      .+..++..+..+|...|++++|...+++..+
T Consensus       327 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~  357 (450)
T 2y4t_A          327 DNVNALKDRAEAYLIEEMYDEAIQDYETAQE  357 (450)
T ss_dssp             TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred             ccHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence            2455556666666666666666666666554

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A

Probab=99.91  E-value=5.6e-21  Score=159.66  Aligned_cols=261  Identities=10%  Similarity=0.029  Sum_probs=200.0

Q ss_pred             cHHHHHHHHHHHHhcCchhhHHHHHHHHHhcCCCCcHHHHHHHHHHHHhhCCCCcchh----------------------
Q 021791            3 NVKMYTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPNER----------------------   60 (307)
Q Consensus         3 ~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~----------------------   60 (307)
                      +..+|..+..++...|++++|.+.|+++.+.+ +.+...+..+..++...|++..+..                      
T Consensus        59 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l  137 (450)
T 2y4t_A           59 NYIAYYRRATVFLAMGKSKAALPDLTKVIQLK-MDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSENEEKEAQSQL  137 (450)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhhHHHHHHH
Confidence            46677777777888888888888888777663 2245677777777777554322111                      


Q ss_pred             -----------------hHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCchhHHHHHHHHHHcCCCCchhhHH
Q 021791           61 -----------------FEKTIRNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHKPQLSLDKLNFMKEKGICPTVATYT  123 (307)
Q Consensus        61 -----------------~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~  123 (307)
                                       ..|++++|...|+++.+.. +.+...+..+..++...|++++|.+.|+.+.+... .+..++.
T Consensus       138 ~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~  215 (450)
T 2y4t_A          138 IKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVC-VWDAELRELRAECFIKEGEPRKAISDLKAASKLKN-DNTEAFY  215 (450)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHC-SCHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHH
Confidence                             1345566777777776653 34677888889999999999999999999987643 4788999


Q ss_pred             HHHHHHHhcCChHHHHHHHHHHHhCCCCCCHhhHHHH------------HHHHhcCCChhHHHHHHHHHhhcCCCCcc--
Q 021791          124 SVVKCLCSCGRIEDAEELLGEMVRNGVSPSAETYNCF------------FKEYRGRKDANGAMKLYRQMKEDDLCVPN--  189 (307)
Q Consensus       124 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l------------~~~~~~~~~~~~a~~~~~~~~~~~~~~~~--  189 (307)
                      .+...|...|++++|...|+++...... +...+..+            ...+...|++++|...|+++....  +.+  
T Consensus       216 ~l~~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~--p~~~~  292 (450)
T 2y4t_A          216 KISTLYYQLGDHELSLSEVRECLKLDQD-HKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTE--PSIAE  292 (450)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--CSSHH
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHhCCC-hHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CcchH
Confidence            9999999999999999999999876432 45555555            788999999999999999999874  223  


Q ss_pred             --HHHHHHHHHHHHhcCcHHHHHHHHHHHhhCCCCCCHHhHHHHHHHHHccCcHHHHHHHHHHHHHcCCCCc-HhhHHHH
Q 021791          190 --IHTYNILIGMFMALNRMDMVREIWNHVKGSELGLDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQ-KVTFETL  266 (307)
Q Consensus       190 --~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~-~~~~~~l  266 (307)
                        ...+..+...+.+.|++++|...++.+.... +.+...|..+..+|...|++++|...++++++.  .|+ ...+..+
T Consensus       293 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~l  369 (450)
T 2y4t_A          293 YTVRSKERICHCFSKDEKPVEAIRVCSEVLQME-PDNVNALKDRAEAYLIEEMYDEAIQDYETAQEH--NENDQQIREGL  369 (450)
T ss_dssp             HHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT--SSSCHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--CcchHHHHHHH
Confidence              4578889999999999999999999988763 337889999999999999999999999999974  455 4444444


Q ss_pred             HHHHhh
Q 021791          267 YRGLIQ  272 (307)
Q Consensus       267 ~~~~~~  272 (307)
                      ..+...
T Consensus       370 ~~~~~~  375 (450)
T 2y4t_A          370 EKAQRL  375 (450)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            444333

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}

Probab=99.89  E-value=3.6e-20  Score=148.23  Aligned_cols=271  Identities=8%  Similarity=-0.077  Sum_probs=232.2

Q ss_pred             cHHHHHHHHHHHHhcCchhhHHHHHHHHHhcCCCCcHHHHHHHHHHHHhhCCCCcchhhHHHHHHHHHHHHHHHhcCCCC
Q 021791            3 NVKMYTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPNERFEKTIRNAEKVFDEMRVRGIEP   82 (307)
Q Consensus         3 ~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~   82 (307)
                      ++..+..+...+...|++++|.++|+++.+.. +.+...+..+..++..          .|++++|...++++.+.. +.
T Consensus        21 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~~~~~~~----------~~~~~~A~~~~~~~~~~~-~~   88 (330)
T 3hym_B           21 NLDVVVSLAERHYYNCDFKMCYKLTSVVMEKD-PFHASCLPVHIGTLVE----------LNKANELFYLSHKLVDLY-PS   88 (330)
T ss_dssp             CCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTTTHHHHHHHHHH----------HTCHHHHHHHHHHHHHHC-TT
T ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCChhhHHHHHHHHHH----------hhhHHHHHHHHHHHHHhC-cC
Confidence            45567778889999999999999999998773 3355667777788888          888999999999998874 44


Q ss_pred             CHHHHHHHHHHHHhcC-CchhHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHhhHHHHH
Q 021791           83 DVTSFSIVLHVYSRAH-KPQLSLDKLNFMKEKGICPTVATYTSVVKCLCSCGRIEDAEELLGEMVRNGVSPSAETYNCFF  161 (307)
Q Consensus        83 ~~~~~~~ll~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~  161 (307)
                      +...+..+...+...| ++++|.+.++...+.... +...+..+...+...|++++|...++++.+.... +...+..+.
T Consensus        89 ~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~  166 (330)
T 3hym_B           89 NPVSWFAVGCYYLMVGHKNEHARRYLSKATTLEKT-YGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKG-CHLPMLYIG  166 (330)
T ss_dssp             STHHHHHHHHHHHHSCSCHHHHHHHHHHHHTTCTT-CTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTT-CSHHHHHHH
T ss_pred             CHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCc-cHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccc-cHHHHHHHH
Confidence            6788999999999999 999999999999887533 6788999999999999999999999999887543 566777799


Q ss_pred             HHHhcCCChhHHHHHHHHHhhcCCCCccHHHHHHHHHHHHhcCcHHHHHHHHHHHhhCC--------CCCCHHhHHHHHH
Q 021791          162 KEYRGRKDANGAMKLYRQMKEDDLCVPNIHTYNILIGMFMALNRMDMVREIWNHVKGSE--------LGLDLDSYTMLIH  233 (307)
Q Consensus       162 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--------~~~~~~~~~~li~  233 (307)
                      ..+...|++++|...+++.....  +.+..++..+...+...|++++|...++.+....        .+....++..+..
T Consensus       167 ~~~~~~~~~~~A~~~~~~al~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~  244 (330)
T 3hym_B          167 LEYGLTNNSKLAERFFSQALSIA--PEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGH  244 (330)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHTTC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHH
T ss_pred             HHHHHHhhHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHH
Confidence            99999999999999999999886  6678899999999999999999999999887642        1334678999999


Q ss_pred             HHHccCcHHHHHHHHHHHHHcCCCCcHhhHHHHHHHHhhchhHHHHHHHHHHhhhcC
Q 021791          234 GLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDEES  290 (307)
Q Consensus       234 ~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~  290 (307)
                      ++...|++++|...+++..+.. +.+...+..+...+...|++++|.+.+++..+..
T Consensus       245 ~~~~~g~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~  300 (330)
T 3hym_B          245 VCRKLKKYAEALDYHRQALVLI-PQNASTYSAIGYIHSLMGNFENAVDYFHTALGLR  300 (330)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTC
T ss_pred             HHHHhcCHHHHHHHHHHHHhhC-ccchHHHHHHHHHHHHhccHHHHHHHHHHHHccC
Confidence            9999999999999999999863 3456788899999999999999999999987654

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}

Probab=99.88  E-value=1.6e-20  Score=152.69  Aligned_cols=267  Identities=10%  Similarity=-0.001  Sum_probs=219.5

Q ss_pred             cHHHHHHHHHHHHhcCchhhHHHHHHHHHhcCCCCcHHHHHHHHHHHHhhCCCCcchhhHHHHHHHHHHHHHHHhcCCCC
Q 021791            3 NVKMYTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPNERFEKTIRNAEKVFDEMRVRGIEP   82 (307)
Q Consensus         3 ~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~   82 (307)
                      ++..|..+...+.+.|++++|.+.|+++.+.. +.+..+|..+..++..          .|++++|...|+++.+.. +.
T Consensus        64 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~----------~g~~~~A~~~~~~al~~~-p~  131 (365)
T 4eqf_A           64 DWPGAFEEGLKRLKEGDLPVTILFMEAAILQD-PGDAEAWQFLGITQAE----------NENEQAAIVALQRCLELQ-PN  131 (365)
T ss_dssp             TCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH----------TTCHHHHHHHHHHHHHHC-TT
T ss_pred             chhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHH----------CCCHHHHHHHHHHHHhcC-CC
Confidence            34568888999999999999999999998873 3467889999999999          888999999999998874 44


Q ss_pred             CHHHHHHHHHHHHhcCCchhHHHHHHHHHHcCCCCc----------hhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCC-
Q 021791           83 DVTSFSIVLHVYSRAHKPQLSLDKLNFMKEKGICPT----------VATYTSVVKCLCSCGRIEDAEELLGEMVRNGVS-  151 (307)
Q Consensus        83 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~----------~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~-  151 (307)
                      +..++..+..++...|++++|.+.++++.+.... +          ...+..+...+...|++++|...++++...... 
T Consensus       132 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~  210 (365)
T 4eqf_A          132 NLKALMALAVSYTNTSHQQDACEALKNWIKQNPK-YKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDM  210 (365)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCHH-HHCC-------------------CCHHHHHHHHHHHHHHHHSCSS
T ss_pred             CHHHHHHHHHHHHccccHHHHHHHHHHHHHhCcc-chHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCc
Confidence            6889999999999999999999999999876321 2          223344588899999999999999999987433 


Q ss_pred             CCHhhHHHHHHHHhcCCChhHHHHHHHHHhhcCCCCccHHHHHHHHHHHHhcCcHHHHHHHHHHHhhCCCCCCHHhHHHH
Q 021791          152 PSAETYNCFFKEYRGRKDANGAMKLYRQMKEDDLCVPNIHTYNILIGMFMALNRMDMVREIWNHVKGSELGLDLDSYTML  231 (307)
Q Consensus       152 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l  231 (307)
                      ++..++..+...+...|++++|...+++..+..  +.+..++..+..++...|++++|...++.+.... +.+..++..+
T Consensus       211 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l  287 (365)
T 4eqf_A          211 IDPDLQTGLGVLFHLSGEFNRAIDAFNAALTVR--PEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQ-PGFIRSRYNL  287 (365)
T ss_dssp             CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHH
T ss_pred             cCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHH
Confidence            267899999999999999999999999999875  6678899999999999999999999999998864 2368889999


Q ss_pred             HHHHHccCcHHHHHHHHHHHHHcCC---C--------CcHhhHHHHHHHHhhchhHHHHHHHHHH
Q 021791          232 IHGLCEKQKWKEACQYFVEMIEKGL---L--------PQKVTFETLYRGLIQSDMLRTWRRLKKK  285 (307)
Q Consensus       232 i~~~~~~g~~~~a~~~~~~~~~~~~---~--------p~~~~~~~l~~~~~~~g~~~~a~~~~~~  285 (307)
                      ..+|...|++++|...|+++++..-   .        .+...+..+..++...|+.+.+..+.++
T Consensus       288 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~  352 (365)
T 4eqf_A          288 GISCINLGAYREAVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANLG  352 (365)
T ss_dssp             HHHHHHHTCCHHHHHHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHHHHHHHHTT
T ss_pred             HHHHHHCCCHHHHHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHHh
Confidence            9999999999999999999987521   0        1356788999999999999998887665

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A

Probab=99.88  E-value=6.7e-20  Score=146.48  Aligned_cols=267  Identities=9%  Similarity=-0.025  Sum_probs=223.7

Q ss_pred             cHHHHHHHHHHHHhcCchhhHHHHHHHHHhcCCCCcHHHHHHHHHHHHhhCCCCcchhhHHHHHHHHHHHHHHHhcCCCC
Q 021791            3 NVKMYTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPNERFEKTIRNAEKVFDEMRVRGIEP   82 (307)
Q Consensus         3 ~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~   82 (307)
                      +...|..+...+...|++++|..+|+++.+.. +.+...+..+..++..          .|++++|.+.++++.+.. +.
T Consensus        20 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~----------~~~~~~A~~~~~~a~~~~-~~   87 (327)
T 3cv0_A           20 YHENPMEEGLSMLKLANLAEAALAFEAVCQAA-PEREEAWRSLGLTQAE----------NEKDGLAIIALNHARMLD-PK   87 (327)
T ss_dssp             GSSCHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH----------TTCHHHHHHHHHHHHHHC-TT
T ss_pred             hhHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHH----------cCCHHHHHHHHHHHHhcC-cC
Confidence            34556778889999999999999999998873 3367788888888888          788999999999998874 44


Q ss_pred             CHHHHHHHHHHHHhcCCchhHHHHHHHHHHcCCCCchhhHHHH--------------HH-HHHhcCChHHHHHHHHHHHh
Q 021791           83 DVTSFSIVLHVYSRAHKPQLSLDKLNFMKEKGICPTVATYTSV--------------VK-CLCSCGRIEDAEELLGEMVR  147 (307)
Q Consensus        83 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l--------------l~-~~~~~~~~~~a~~~~~~~~~  147 (307)
                      +..++..+...+...|++++|.+.++.+.+.... +...+..+              .. .+...|++++|...++++.+
T Consensus        88 ~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~  166 (327)
T 3cv0_A           88 DIAVHAALAVSHTNEHNANAALASLRAWLLSQPQ-YEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALE  166 (327)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTT-TTTC--------------------CCTTSHHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCc-cHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHh
Confidence            7889999999999999999999999999887433 33344333              22 37788999999999999988


Q ss_pred             CCCCCCHhhHHHHHHHHhcCCChhHHHHHHHHHhhcCCCCccHHHHHHHHHHHHhcCcHHHHHHHHHHHhhCCCCCCHHh
Q 021791          148 NGVSPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDDLCVPNIHTYNILIGMFMALNRMDMVREIWNHVKGSELGLDLDS  227 (307)
Q Consensus       148 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~  227 (307)
                      .... +...+..+...+...|++++|...+++.....  +.+..++..+...+...|++++|...++.+.... +.+...
T Consensus       167 ~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~  242 (327)
T 3cv0_A          167 MNPN-DAQLHASLGVLYNLSNNYDSAAANLRRAVELR--PDDAQLWNKLGATLANGNRPQEALDAYNRALDIN-PGYVRV  242 (327)
T ss_dssp             HSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHH
T ss_pred             hCCC-CHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC--CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHH
Confidence            7543 78899999999999999999999999998875  5678899999999999999999999999988764 336788


Q ss_pred             HHHHHHHHHccCcHHHHHHHHHHHHHcCCCC-----------cHhhHHHHHHHHhhchhHHHHHHHHHHh
Q 021791          228 YTMLIHGLCEKQKWKEACQYFVEMIEKGLLP-----------QKVTFETLYRGLIQSDMLRTWRRLKKKL  286 (307)
Q Consensus       228 ~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p-----------~~~~~~~l~~~~~~~g~~~~a~~~~~~~  286 (307)
                      +..+..++...|++++|...++++.+.....           +..++..+..++...|+.++|..++++.
T Consensus       243 ~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~  312 (327)
T 3cv0_A          243 MYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQN  312 (327)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTCC
T ss_pred             HHHHHHHHHHhccHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence            9999999999999999999999998763221           4678889999999999999999998764

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A

Probab=99.87  E-value=5.9e-20  Score=149.38  Aligned_cols=267  Identities=9%  Similarity=-0.012  Sum_probs=223.3

Q ss_pred             cHHHHHHHHHHHHhcCchhhHHHHHHHHHhcCCCCcHHHHHHHHHHHHhhCCCCcchhhHHHHHHHHHHHHHHHhcCCCC
Q 021791            3 NVKMYTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPNERFEKTIRNAEKVFDEMRVRGIEP   82 (307)
Q Consensus         3 ~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~   82 (307)
                      +...+..+...+...|++++|...|+++.+.. +.+...+..+..++..          .|++++|...|+++.+.. +.
T Consensus        63 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~----------~g~~~~A~~~~~~al~~~-~~  130 (368)
T 1fch_A           63 DHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQD-PKHMEAWQYLGTTQAE----------NEQELLAISALRRCLELK-PD  130 (368)
T ss_dssp             TCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHH----------TTCHHHHHHHHHHHHHHC-TT
T ss_pred             chHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHH----------CcCHHHHHHHHHHHHhcC-CC
Confidence            34567788999999999999999999999873 3467788888889998          888999999999998874 44


Q ss_pred             CHHHHHHHHHHHHhcCCchhHHHHHHHHHHcCCCCchhhHHH---------------HHHHHHhcCChHHHHHHHHHHHh
Q 021791           83 DVTSFSIVLHVYSRAHKPQLSLDKLNFMKEKGICPTVATYTS---------------VVKCLCSCGRIEDAEELLGEMVR  147 (307)
Q Consensus        83 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~---------------ll~~~~~~~~~~~a~~~~~~~~~  147 (307)
                      +..++..+...+...|++++|.+.++.+.+.... +...+..               .+..+...|++++|...++++..
T Consensus       131 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~  209 (368)
T 1fch_A          131 NQTALMALAVSFTNESLQRQACEILRDWLRYTPA-YAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVR  209 (368)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTT-TGGGCC---------------CTTHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC-cHHHHHHHHHHhhhhcccHHHHHHHHHhhcccHHHHHHHHHHHHH
Confidence            7889999999999999999999999999887543 2222221               23344489999999999999988


Q ss_pred             CCCCC-CHhhHHHHHHHHhcCCChhHHHHHHHHHhhcCCCCccHHHHHHHHHHHHhcCcHHHHHHHHHHHhhCCCCCCHH
Q 021791          148 NGVSP-SAETYNCFFKEYRGRKDANGAMKLYRQMKEDDLCVPNIHTYNILIGMFMALNRMDMVREIWNHVKGSELGLDLD  226 (307)
Q Consensus       148 ~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~  226 (307)
                      ..... +..++..+...+...|++++|...+++.....  +.+..++..+...+...|++++|...++.+.... +.+..
T Consensus       210 ~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~  286 (368)
T 1fch_A          210 LDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVR--PNDYLLWNKLGATLANGNQSEEAVAAYRRALELQ-PGYIR  286 (368)
T ss_dssp             HSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHH
T ss_pred             hCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHH
Confidence            64332 57889999999999999999999999998875  5678899999999999999999999999998764 33678


Q ss_pred             hHHHHHHHHHccCcHHHHHHHHHHHHHcCCCC----------cHhhHHHHHHHHhhchhHHHHHHHHHH
Q 021791          227 SYTMLIHGLCEKQKWKEACQYFVEMIEKGLLP----------QKVTFETLYRGLIQSDMLRTWRRLKKK  285 (307)
Q Consensus       227 ~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p----------~~~~~~~l~~~~~~~g~~~~a~~~~~~  285 (307)
                      .+..+..+|...|++++|...|+++.+.....          ...+|..+..++...|+.++|..++++
T Consensus       287 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~  355 (368)
T 1fch_A          287 SRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGAADAR  355 (368)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGHHHHHTT
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCccccccchhhHHHHHHHHHHHHhCChHhHHHhHHH
Confidence            89999999999999999999999998752111          157899999999999999999988764

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}

Probab=99.87  E-value=2.8e-18  Score=138.74  Aligned_cols=270  Identities=11%  Similarity=0.002  Sum_probs=135.4

Q ss_pred             cHHHHHHHHHHHHhcCchhhHHHHHHHHHhcCCCCcHHHHHHHHHHHHhhCCCCcchhhHHHHHHHHHHHHHHHhcCCCC
Q 021791            3 NVKMYTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPNERFEKTIRNAEKVFDEMRVRGIEP   82 (307)
Q Consensus         3 ~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~   82 (307)
                      |+..+..+...+...|++++|.+.|+++.+.. +.+...+..+..++..          .|++++|...++++.+.. +.
T Consensus         2 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~----------~~~~~~A~~~~~~~~~~~-~~   69 (359)
T 3ieg_A            2 DVEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLA----------MGKSKAALPDLTKVIALK-MD   69 (359)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH----------HTCHHHHHHHHHHHHHHC-TT
T ss_pred             cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHH----------ccCHHHHHHHHHHHHHhC-CC
Confidence            34555555666666666666666666655542 2234455555555555          444555555555554432 22


Q ss_pred             CHHHHHHHHHHHHhcCCchhHHHHHHHHHHcCC-----------------------------------------------
Q 021791           83 DVTSFSIVLHVYSRAHKPQLSLDKLNFMKEKGI-----------------------------------------------  115 (307)
Q Consensus        83 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~-----------------------------------------------  115 (307)
                      +...+..+...+...|++++|...++.+.+...                                               
T Consensus        70 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~  149 (359)
T 3ieg_A           70 FTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEV  149 (359)
T ss_dssp             CHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             cchHHHHHHHHHHHcCChHHHHHHHHHHHhcCCcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Confidence            344445555555555555555555555444321                                               


Q ss_pred             -CCchhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHhcCCChhHHHHHHHHHhhcCCCCccHHHHH
Q 021791          116 -CPTVATYTSVVKCLCSCGRIEDAEELLGEMVRNGVSPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDDLCVPNIHTYN  194 (307)
Q Consensus       116 -~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~  194 (307)
                       +.+..++..+...+...|++++|...++++..... .+..++..+...+...|++++|...+++..+..  +.+...+.
T Consensus       150 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~  226 (359)
T 3ieg_A          150 CVWDAELRELRAECFIKEGEPRKAISDLKAASKLKS-DNTEAFYKISTLYYQLGDHELSLSEVRECLKLD--QDHKRCFA  226 (359)
T ss_dssp             CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCS-CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--TTCHHHHH
T ss_pred             CCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--ccchHHHH
Confidence             11344444444445555555555555555444322 134444455555555555555555555554442  22222222


Q ss_pred             H------------HHHHHHhcCcHHHHHHHHHHHhhCCCCCCH----HhHHHHHHHHHccCcHHHHHHHHHHHHHcCCCC
Q 021791          195 I------------LIGMFMALNRMDMVREIWNHVKGSELGLDL----DSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLP  258 (307)
Q Consensus       195 ~------------l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p  258 (307)
                      .            +...+...|++++|...++.+...... +.    ..+..+..++...|++++|...+++..+.. +.
T Consensus       227 ~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~  304 (359)
T 3ieg_A          227 HYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPS-VAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQME-PD  304 (359)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCS-SHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TT
T ss_pred             HHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-chHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-cc
Confidence            1            133445555555555555555543211 22    123334555666666666666666666542 23


Q ss_pred             cHhhHHHHHHHHhhchhHHHHHHHHHHhhhc
Q 021791          259 QKVTFETLYRGLIQSDMLRTWRRLKKKLDEE  289 (307)
Q Consensus       259 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~  289 (307)
                      +..++..+...+...|++++|.+.+++..+.
T Consensus       305 ~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~  335 (359)
T 3ieg_A          305 NVNALKDRAEAYLIEEMYDEAIQDYEAAQEH  335 (359)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred             cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence            4556666666666666666666666666544

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}

Probab=99.86  E-value=4.9e-18  Score=137.28  Aligned_cols=263  Identities=11%  Similarity=0.024  Sum_probs=196.4

Q ss_pred             cHHHHHHHHHHHHhcCchhhHHHHHHHHHhcCCCCcHHHHHHHHHHHHhhCCCCcchh----------------------
Q 021791            3 NVKMYTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPNER----------------------   60 (307)
Q Consensus         3 ~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~----------------------   60 (307)
                      ++.+|..+...+...|++++|...|+++.+.. +-+...+..+...+...|++..+..                      
T Consensus        36 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l  114 (359)
T 3ieg_A           36 NYIAYYRRATVFLAMGKSKAALPDLTKVIALK-MDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQL  114 (359)
T ss_dssp             CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSCCCHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCcchHHHHHHHHHHHcCChHHHHHHHHHHHhcCCcccChHHHHHHH
Confidence            45677778888888888888888888887762 2255677777777777444221100                      


Q ss_pred             -----------------hHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCchhHHHHHHHHHHcCCCCchhhHH
Q 021791           61 -----------------FEKTIRNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHKPQLSLDKLNFMKEKGICPTVATYT  123 (307)
Q Consensus        61 -----------------~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~  123 (307)
                                       ..|++++|.+.++++.+.. +.+...+..+...+...|++++|...++.+.+... .+..++.
T Consensus       115 ~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~  192 (359)
T 3ieg_A          115 VKADEMQRLRSQALDAFDGADYTAAITFLDKILEVC-VWDAELRELRAECFIKEGEPRKAISDLKAASKLKS-DNTEAFY  192 (359)
T ss_dssp             HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCS-CCHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHH
Confidence                             0344455666666655542 34667788888889999999999999999988753 4788999


Q ss_pred             HHHHHHHhcCChHHHHHHHHHHHhCCCCCCHhhHHHH------------HHHHhcCCChhHHHHHHHHHhhcCCCCccH-
Q 021791          124 SVVKCLCSCGRIEDAEELLGEMVRNGVSPSAETYNCF------------FKEYRGRKDANGAMKLYRQMKEDDLCVPNI-  190 (307)
Q Consensus       124 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l------------~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-  190 (307)
                      .+...+...|++++|...+++..+.... +...+..+            ...+.+.|++++|...+++.....  +.+. 
T Consensus       193 ~la~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~--~~~~~  269 (359)
T 3ieg_A          193 KISTLYYQLGDHELSLSEVRECLKLDQD-HKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTE--PSVAE  269 (359)
T ss_dssp             HHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CSSHH
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHhhCcc-chHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CCchH
Confidence            9999999999999999999999886433 44444322            566899999999999999998875  2333 


Q ss_pred             ---HHHHHHHHHHHhcCcHHHHHHHHHHHhhCCCCCCHHhHHHHHHHHHccCcHHHHHHHHHHHHHcCCCCc-HhhHHHH
Q 021791          191 ---HTYNILIGMFMALNRMDMVREIWNHVKGSELGLDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQ-KVTFETL  266 (307)
Q Consensus       191 ---~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~-~~~~~~l  266 (307)
                         ..+..+...+...|++++|...++...... +.+...+..+..++...|++++|...|++..+.  .|+ ...+..+
T Consensus       270 ~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~--~p~~~~~~~~l  346 (359)
T 3ieg_A          270 YTVRSKERICHCFSKDEKPVEAIRICSEVLQME-PDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEH--NENDQQIREGL  346 (359)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT--CTTCHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCCChHHHHHH
Confidence               335567889999999999999999998864 337889999999999999999999999999975  454 4455555


Q ss_pred             HHHHhhch
Q 021791          267 YRGLIQSD  274 (307)
Q Consensus       267 ~~~~~~~g  274 (307)
                      ..+....+
T Consensus       347 ~~~~~~~~  354 (359)
T 3ieg_A          347 EKAQRLLK  354 (359)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            55544433

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}

Probab=99.86  E-value=9.2e-19  Score=148.57  Aligned_cols=165  Identities=12%  Similarity=0.003  Sum_probs=118.4

Q ss_pred             hhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHhcCCChhHHHHHHHHHhhcCCCCccHHHHHHHHH
Q 021791          119 VATYTSVVKCLCSCGRIEDAEELLGEMVRNGVSPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDDLCVPNIHTYNILIG  198 (307)
Q Consensus       119 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~  198 (307)
                      ..++..+...+...|++++|...++++......  ...+..+...+...|++++|...+++.....  +.+..++..+..
T Consensus       237 ~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~l~~  312 (514)
T 2gw1_A          237 AISLEHTGIFKFLKNDPLGAHEDIKKAIELFPR--VNSYIYMALIMADRNDSTEYYNYFDKALKLD--SNNSSVYYHRGQ  312 (514)
T ss_dssp             HHHHHHHHHHHHHSSCHHHHHHHHHHHHHHCCC--HHHHHHHHHHHHTSSCCTTGGGHHHHHHTTC--TTCTHHHHHHHH
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcc--HHHHHHHHHHHHHCCCHHHHHHHHHHHhhcC--cCCHHHHHHHHH
Confidence            345555666666777777777777777665433  6667777777777777777777777777664  456667777777


Q ss_pred             HHHhcCcHHHHHHHHHHHhhCCCCCCHHhHHHHHHHHHccCcHHHHHHHHHHHHHcCCCCcHhhHHHHHHHHhhchhHHH
Q 021791          199 MFMALNRMDMVREIWNHVKGSELGLDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRT  278 (307)
Q Consensus       199 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~  278 (307)
                      .+...|++++|...++.+...... +...+..+...+...|++++|...++++.+.. +.+..++..+...+...|++++
T Consensus       313 ~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~  390 (514)
T 2gw1_A          313 MNFILQNYDQAGKDFDKAKELDPE-NIFPYIQLACLAYRENKFDDCETLFSEAKRKF-PEAPEVPNFFAEILTDKNDFDK  390 (514)
T ss_dssp             HHHHTTCTTHHHHHHHHHHHTCSS-CSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHTTCHHH
T ss_pred             HHHHhCCHHHHHHHHHHHHHhChh-hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHc-ccCHHHHHHHHHHHHHCCCHHH
Confidence            888888888888888887766432 56677777788888888888888888887652 3345667777778888888888


Q ss_pred             HHHHHHHhhhc
Q 021791          279 WRRLKKKLDEE  289 (307)
Q Consensus       279 a~~~~~~~~~~  289 (307)
                      |...++++.+.
T Consensus       391 A~~~~~~a~~~  401 (514)
T 2gw1_A          391 ALKQYDLAIEL  401 (514)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHh
Confidence            88888777554

>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}

Probab=99.86  E-value=1.8e-21  Score=169.13  Aligned_cols=150  Identities=13%  Similarity=0.126  Sum_probs=126.0

Q ss_pred             HHHHHHHHHHHHhcCchhhHHHHHHHHHh---cCCCCcHHHHHHHHHHHHhhCCCCcchhhHHHHHHHHHHHHHHHhcCC
Q 021791            4 VKMYTSLIYGWCKINRIDMAERFLGEMIE---RGVEPNVVTYNVLLNGVCRRASLHPNERFEKTIRNAEKVFDEMRVRGI   80 (307)
Q Consensus         4 ~~~~~~li~~~~~~g~~~~a~~~~~~~~~---~~~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~   80 (307)
                      ..+||++|.+|++.|++++|.++|++|.+   .|+.||..|||+||.+|++          .|++++|.++|++|.+.|+
T Consensus       127 ~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck----------~G~~~eA~~Lf~eM~~~G~  196 (1134)
T 3spa_A          127 QQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWAR----------QGAFKELVYVLFMVKDAGL  196 (1134)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHH----------HTCHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHh----------CCCHHHHHHHHHHHHHcCC
Confidence            35899999999999999999999988764   5899999999999999999          8899999999999999999


Q ss_pred             CCCHHHHHHHHHHHHhcCCc-hhHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCC------
Q 021791           81 EPDVTSFSIVLHVYSRAHKP-QLSLDKLNFMKEKGICPTVATYTSVVKCLCSCGRIEDAEELLGEMVRNGVSPS------  153 (307)
Q Consensus        81 ~~~~~~~~~ll~~~~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~------  153 (307)
                      .||..|||++|.++++.|+. ++|.++|++|.+.|+.||..+|+.++..+.+.    .+++..+++ .-+..|+      
T Consensus       197 ~PDvvTYntLI~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~----~vL~~Vrkv-~P~f~p~~~~~~~  271 (1134)
T 3spa_A          197 TPDLLSYAAALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRA----TVLKAVHKV-KPTFSLPPQLPPP  271 (1134)
T ss_dssp             CCCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHH----HHHHHHGGG-CCCCCCCCCCCCC
T ss_pred             CCcHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHH----HHHHHHHHh-CcccCCCCCCccc
Confidence            99999999999999999985 78999999999999999999999998765554    333333333 2234443      


Q ss_pred             HhhHHHHHHHHhcCC
Q 021791          154 AETYNCFFKEYRGRK  168 (307)
Q Consensus       154 ~~~~~~l~~~~~~~~  168 (307)
                      ..+...|.+.|.+.+
T Consensus       272 ~~t~~LL~dl~s~d~  286 (1134)
T 3spa_A          272 VNTSKLLRDVYAKDG  286 (1134)
T ss_dssp             CCCCTTTHHHHCCCS
T ss_pred             ccchHHHHHHHccCC
Confidence            445566777777655

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}

Probab=99.83  E-value=4e-18  Score=144.66  Aligned_cols=271  Identities=8%  Similarity=-0.065  Sum_probs=226.5

Q ss_pred             HHHHHHHHHHHHh---cCchhhHHHHHHHHHh-----cCC--------CCcHHHHHHHHHHHHhhCCCCcchhhHHHHHH
Q 021791            4 VKMYTSLIYGWCK---INRIDMAERFLGEMIE-----RGV--------EPNVVTYNVLLNGVCRRASLHPNERFEKTIRN   67 (307)
Q Consensus         4 ~~~~~~li~~~~~---~g~~~~a~~~~~~~~~-----~~~--------~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~   67 (307)
                      ...+......+..   .|++++|...|+++.+     ...        +.+...+..+...+..          .|++++
T Consensus       186 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~  255 (514)
T 2gw1_A          186 ADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTGIFKFL----------KNDPLG  255 (514)
T ss_dssp             HHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHHHHHHHH----------SSCHHH
T ss_pred             HHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHHHHHHHH----------CCCHHH
Confidence            4444445555554   8999999999999987     311        2235677778888888          788999


Q ss_pred             HHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCchhHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCChHHHHHHHHHHHh
Q 021791           68 AEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHKPQLSLDKLNFMKEKGICPTVATYTSVVKCLCSCGRIEDAEELLGEMVR  147 (307)
Q Consensus        68 a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~  147 (307)
                      |...|+++.+..  |+...+..+..++...|++++|...++.+.+... .+..++..+...+...|++++|...++++..
T Consensus       256 A~~~~~~~l~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~  332 (514)
T 2gw1_A          256 AHEDIKKAIELF--PRVNSYIYMALIMADRNDSTEYYNYFDKALKLDS-NNSSVYYHRGQMNFILQNYDQAGKDFDKAKE  332 (514)
T ss_dssp             HHHHHHHHHHHC--CCHHHHHHHHHHHHTSSCCTTGGGHHHHHHTTCT-TCTHHHHHHHHHHHHTTCTTHHHHHHHHHHH
T ss_pred             HHHHHHHHHhhC--ccHHHHHHHHHHHHHCCCHHHHHHHHHHHhhcCc-CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence            999999998874  3488899999999999999999999999988753 3677899999999999999999999999998


Q ss_pred             CCCCCCHhhHHHHHHHHhcCCChhHHHHHHHHHhhcCCCCccHHHHHHHHHHHHhcCcHHHHHHHHHHHhhCCCC-CC--
Q 021791          148 NGVSPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDDLCVPNIHTYNILIGMFMALNRMDMVREIWNHVKGSELG-LD--  224 (307)
Q Consensus       148 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~--  224 (307)
                      .... +...+..+...+...|++++|...++++....  +.+..++..+...+...|++++|...++.+...... ++  
T Consensus       333 ~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~  409 (514)
T 2gw1_A          333 LDPE-NIFPYIQLACLAYRENKFDDCETLFSEAKRKF--PEAPEVPNFFAEILTDKNDFDKALKQYDLAIELENKLDGIY  409 (514)
T ss_dssp             TCSS-CSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHS--TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSSSCS
T ss_pred             hChh-hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHc--ccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccchHH
Confidence            7544 67788999999999999999999999998875  557788999999999999999999999998764222 11  


Q ss_pred             --HHhHHHHHHHHHc---cCcHHHHHHHHHHHHHcCCCCcHhhHHHHHHHHhhchhHHHHHHHHHHhhhcCC
Q 021791          225 --LDSYTMLIHGLCE---KQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDEESI  291 (307)
Q Consensus       225 --~~~~~~li~~~~~---~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~  291 (307)
                        ...+..+..++..   .|++++|...++++.+.. +.+..++..+...+...|++++|...+++..+...
T Consensus       410 ~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~  480 (514)
T 2gw1_A          410 VGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLD-PRSEQAKIGLAQMKLQQEDIDEAITLFEESADLAR  480 (514)
T ss_dssp             SCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCS
T ss_pred             HHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhcc
Confidence              3488999999999   999999999999999863 34567888999999999999999999999876543

>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}

Probab=99.83  E-value=1.6e-20  Score=163.34  Aligned_cols=124  Identities=16%  Similarity=0.126  Sum_probs=105.5

Q ss_pred             CHhhHHHHHHHHhcCCChhHHHHHHHHHhh---cCCCCccHHHHHHHHHHHHhcCcHHHHHHHHHHHhhCCCCCCHHhHH
Q 021791          153 SAETYNCFFKEYRGRKDANGAMKLYRQMKE---DDLCVPNIHTYNILIGMFMALNRMDMVREIWNHVKGSELGLDLDSYT  229 (307)
Q Consensus       153 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~  229 (307)
                      -..||+++|.+|++.|+.++|.++|.+|.+   .+. .||..|||+||.+|++.|++++|.++|++|...|+.||..||+
T Consensus       126 ~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~-~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYn  204 (1134)
T 3spa_A          126 QQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRK-LLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYA  204 (1134)
T ss_dssp             HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHT-TCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHH
T ss_pred             HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCC-CCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHH
Confidence            356899999999999999999999987764   344 8999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHccCc-HHHHHHHHHHHHHcCCCCcHhhHHHHHHHHhhchhHH
Q 021791          230 MLIHGLCEKQK-WKEACQYFVEMIEKGLLPQKVTFETLYRGLIQSDMLR  277 (307)
Q Consensus       230 ~li~~~~~~g~-~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~  277 (307)
                      .+|.++++.|+ .++|.++|++|.+.|+.||..+|+.++.++.+.+-++
T Consensus       205 tLI~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~~vL~  253 (1134)
T 3spa_A          205 AALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRATVLK  253 (1134)
T ss_dssp             HHHHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHHHHHH
T ss_pred             HHHHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHHHHHH
Confidence            99999999887 5788899999999999999999998886555544333

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A

Probab=99.83  E-value=2.4e-18  Score=139.90  Aligned_cols=263  Identities=11%  Similarity=-0.041  Sum_probs=206.0

Q ss_pred             HHHhcCchhhHHH-HHHHHHhcCC-CC--cHHHHHHHHHHHHhhCCCCcchhhHHHHHHHHHHHHHHHhcCCCCCHHHHH
Q 021791           13 GWCKINRIDMAER-FLGEMIERGV-EP--NVVTYNVLLNGVCRRASLHPNERFEKTIRNAEKVFDEMRVRGIEPDVTSFS   88 (307)
Q Consensus        13 ~~~~~g~~~~a~~-~~~~~~~~~~-~p--~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~   88 (307)
                      ++...|++++|.+ .|++...... .|  +...+..+...+..          .|++++|...|+++.+.. +.+...+.
T Consensus        34 ~~~~~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~----------~g~~~~A~~~~~~al~~~-p~~~~~~~  102 (368)
T 1fch_A           34 AHPWLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQ----------EGDLPNAVLLFEAAVQQD-PKHMEAWQ  102 (368)
T ss_dssp             ------------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHH----------TTCHHHHHHHHHHHHHSC-TTCHHHHH
T ss_pred             hhHHHHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHH----------CCCHHHHHHHHHHHHHhC-CCCHHHHH
Confidence            3445677888887 7776554311 11  35567788888888          888999999999999874 45788999


Q ss_pred             HHHHHHHhcCCchhHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHhhHHH---------
Q 021791           89 IVLHVYSRAHKPQLSLDKLNFMKEKGICPTVATYTSVVKCLCSCGRIEDAEELLGEMVRNGVSPSAETYNC---------  159 (307)
Q Consensus        89 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~---------  159 (307)
                      .+..++...|++++|...++.+.+... .+..++..+...|...|++++|...++++...... +...+..         
T Consensus       103 ~l~~~~~~~g~~~~A~~~~~~al~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~  180 (368)
T 1fch_A          103 YLGTTQAENEQELLAISALRRCLELKP-DNQTALMALAVSFTNESLQRQACEILRDWLRYTPA-YAHLVTPAEEGAGGAG  180 (368)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTT-TGGGCC----------
T ss_pred             HHHHHHHHCcCHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC-cHHHHHHHHHHhhhhc
Confidence            999999999999999999999988764 37889999999999999999999999999986543 2222221         


Q ss_pred             ------HHHHHhcCCChhHHHHHHHHHhhcCCCCccHHHHHHHHHHHHhcCcHHHHHHHHHHHhhCCCCCCHHhHHHHHH
Q 021791          160 ------FFKEYRGRKDANGAMKLYRQMKEDDLCVPNIHTYNILIGMFMALNRMDMVREIWNHVKGSELGLDLDSYTMLIH  233 (307)
Q Consensus       160 ------l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~  233 (307)
                            .+..+...|++++|...++++.......++..++..+...+...|++++|...++.+.... +.+..++..+..
T Consensus       181 ~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~  259 (368)
T 1fch_A          181 LGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVR-PNDYLLWNKLGA  259 (368)
T ss_dssp             -----CTTHHHHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred             ccHHHHHHHHHhhcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCCHHHHHHHHH
Confidence                  2333448899999999999999875211268899999999999999999999999998764 336789999999


Q ss_pred             HHHccCcHHHHHHHHHHHHHcCCCCcHhhHHHHHHHHhhchhHHHHHHHHHHhhhcC
Q 021791          234 GLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDEES  290 (307)
Q Consensus       234 ~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~  290 (307)
                      ++...|++++|...|+++++.. +.+..++..+...+.+.|++++|...+++..+..
T Consensus       260 ~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~  315 (368)
T 1fch_A          260 TLANGNQSEEAVAAYRRALELQ-PGYIRSRYNLGISCINLGAHREAVEHFLEALNMQ  315 (368)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred             HHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence            9999999999999999998863 3457789999999999999999999999886543

>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}

Probab=99.83  E-value=5.7e-18  Score=132.98  Aligned_cols=253  Identities=9%  Similarity=0.020  Sum_probs=179.3

Q ss_pred             HHHHHhcCchhhHHHHHHHHHhcCCCCcH--HHHHHHHHHHHhhCCCCcchhhHHHHHHHHHHHHHHHhcCCCCCHHHHH
Q 021791           11 IYGWCKINRIDMAERFLGEMIERGVEPNV--VTYNVLLNGVCRRASLHPNERFEKTIRNAEKVFDEMRVRGIEPDVTSFS   88 (307)
Q Consensus        11 i~~~~~~g~~~~a~~~~~~~~~~~~~p~~--~~~~~ll~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~   88 (307)
                      ++-....|++..|+..++.....  .|+.  .....+.+++..          .|+++.|+..++.    .-+|+..++.
T Consensus         6 ~~~~~~~g~y~~ai~~~~~~~~~--~p~~~~e~~~~l~r~yi~----------~g~~~~al~~~~~----~~~~~~~a~~   69 (291)
T 3mkr_A            6 VKNAFYIGSYQQCINEAQRVKPS--SPERDVERDVFLYRAYLA----------QRKYGVVLDEIKP----SSAPELQAVR   69 (291)
T ss_dssp             HHHHHHTTCHHHHHHHHHHSCCC--SHHHHHHHHHHHHHHHHH----------TTCHHHHHHHSCT----TSCHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHhcccC--CchhhHHHHHHHHHHHHH----------CCCHHHHHHHhcc----cCChhHHHHH
Confidence            34455678888888887765443  3433  345566777777          6677777765543    2356777788


Q ss_pred             HHHHHHHhcCCchhHHHHHHHHHHcCCCC-chhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHhcC
Q 021791           89 IVLHVYSRAHKPQLSLDKLNFMKEKGICP-TVATYTSVVKCLCSCGRIEDAEELLGEMVRNGVSPSAETYNCFFKEYRGR  167 (307)
Q Consensus        89 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  167 (307)
                      .+...+...++.++|++.++++...+..| +...+..+...+...|++++|++.+++      +.+...+..+...+.+.
T Consensus        70 ~la~~~~~~~~~~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~------~~~~~~~~~l~~~~~~~  143 (291)
T 3mkr_A           70 MFAEYLASHSRRDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ------GDSLECMAMTVQILLKL  143 (291)
T ss_dssp             HHHHHHHCSTTHHHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT------CCSHHHHHHHHHHHHHT
T ss_pred             HHHHHHcCCCcHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC------CCCHHHHHHHHHHHHHC
Confidence            88888888888888888888887765434 455566667888888888888888876      34677888888888888


Q ss_pred             CChhHHHHHHHHHhhcCCCCccHHH---HHHHHHHHHhcCcHHHHHHHHHHHhhCCCCCCHHhHHHHHHHHHccCcHHHH
Q 021791          168 KDANGAMKLYRQMKEDDLCVPNIHT---YNILIGMFMALNRMDMVREIWNHVKGSELGLDLDSYTMLIHGLCEKQKWKEA  244 (307)
Q Consensus       168 ~~~~~a~~~~~~~~~~~~~~~~~~~---~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a  244 (307)
                      |++++|...++.+.+..   |+...   ....+..+...|++++|..+|+++.... +.+...++.+..++.+.|++++|
T Consensus       144 g~~~~A~~~l~~~~~~~---p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~-p~~~~~~~~la~~~~~~g~~~eA  219 (291)
T 3mkr_A          144 DRLDLARKELKKMQDQD---EDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKC-SPTLLLLNGQAACHMAQGRWEAA  219 (291)
T ss_dssp             TCHHHHHHHHHHHHHHC---TTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHS-CCCHHHHHHHHHHHHHTTCHHHH
T ss_pred             CCHHHHHHHHHHHHhhC---cCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHH
Confidence            88888888888887764   33221   1223334445578888888888888763 44777888888888888888888


Q ss_pred             HHHHHHHHHcCCCCcHhhHHHHHHHHhhchhHHH-HHHHHHHhhhcC
Q 021791          245 CQYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRT-WRRLKKKLDEES  290 (307)
Q Consensus       245 ~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~-a~~~~~~~~~~~  290 (307)
                      ...|++.++.. +-++.++..++..+...|+.++ +.++++++.+..
T Consensus       220 ~~~l~~al~~~-p~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~~  265 (291)
T 3mkr_A          220 EGVLQEALDKD-SGHPETLINLVVLSQHLGKPPEVTNRYLSQLKDAH  265 (291)
T ss_dssp             HHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhC
Confidence            88888887763 3356677778888888887754 567777765543

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}

Probab=99.82  E-value=3.1e-18  Score=139.18  Aligned_cols=238  Identities=11%  Similarity=-0.022  Sum_probs=196.7

Q ss_pred             cHHHHHHHHHHHHhhCCCCcchhhHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCchhHHHHHHHHHHcCCCC
Q 021791           38 NVVTYNVLLNGVCRRASLHPNERFEKTIRNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHKPQLSLDKLNFMKEKGICP  117 (307)
Q Consensus        38 ~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~  117 (307)
                      +...+..+...+.+          .|++++|...|+++.+.. +.+..++..+..++...|++++|.+.|+++.+... .
T Consensus        64 ~~~~~~~~~~~~~~----------~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p-~  131 (365)
T 4eqf_A           64 DWPGAFEEGLKRLK----------EGDLPVTILFMEAAILQD-PGDAEAWQFLGITQAENENEQAAIVALQRCLELQP-N  131 (365)
T ss_dssp             TCTTHHHHHHHHHH----------HTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-T
T ss_pred             chhHHHHHHHHHHH----------CCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC-C
Confidence            44558888888888          889999999999999874 45788999999999999999999999999988753 3


Q ss_pred             chhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCH----------hhHHHHHHHHhcCCChhHHHHHHHHHhhcCCCC
Q 021791          118 TVATYTSVVKCLCSCGRIEDAEELLGEMVRNGVSPSA----------ETYNCFFKEYRGRKDANGAMKLYRQMKEDDLCV  187 (307)
Q Consensus       118 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~----------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~  187 (307)
                      +..++..+...|...|++++|...++++.+.... +.          ..+..+...+...|++++|...++++.......
T Consensus       132 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~  210 (365)
T 4eqf_A          132 NLKALMALAVSYTNTSHQQDACEALKNWIKQNPK-YKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDM  210 (365)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCHH-HHCC-------------------CCHHHHHHHHHHHHHHHHSCSS
T ss_pred             CHHHHHHHHHHHHccccHHHHHHHHHHHHHhCcc-chHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCc
Confidence            6889999999999999999999999999875321 12          233345788999999999999999999886211


Q ss_pred             ccHHHHHHHHHHHHhcCcHHHHHHHHHHHhhCCCCCCHHhHHHHHHHHHccCcHHHHHHHHHHHHHcCCCCcHhhHHHHH
Q 021791          188 PNIHTYNILIGMFMALNRMDMVREIWNHVKGSELGLDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLY  267 (307)
Q Consensus       188 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~  267 (307)
                      ++..++..+...+...|++++|.+.++.+.... +.+..+|..+..+|...|++++|...|+++++.. +.+..++..+.
T Consensus       211 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~  288 (365)
T 4eqf_A          211 IDPDLQTGLGVLFHLSGEFNRAIDAFNAALTVR-PEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQ-PGFIRSRYNLG  288 (365)
T ss_dssp             CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred             cCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHH
Confidence            278899999999999999999999999998874 3378899999999999999999999999999863 33577899999


Q ss_pred             HHHhhchhHHHHHHHHHHhhhcC
Q 021791          268 RGLIQSDMLRTWRRLKKKLDEES  290 (307)
Q Consensus       268 ~~~~~~g~~~~a~~~~~~~~~~~  290 (307)
                      .+|...|++++|...+++..+..
T Consensus       289 ~~~~~~g~~~~A~~~~~~al~~~  311 (365)
T 4eqf_A          289 ISCINLGAYREAVSNFLTALSLQ  311 (365)
T ss_dssp             HHHHHHTCCHHHHHHHHHHHHHH
T ss_pred             HHHHHCCCHHHHHHHHHHHHHhC
Confidence            99999999999999999986544

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}

Probab=99.82  E-value=1.4e-17  Score=133.07  Aligned_cols=259  Identities=7%  Similarity=-0.071  Sum_probs=214.4

Q ss_pred             cHHHHHHHHHHHHhcCchhhHHHHHHHHHhcCCCCcHHHHHHHHHHHHhhCCCCcchhhHH-HHHHHHHHHHHHHhcCCC
Q 021791            3 NVKMYTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPNERFEK-TIRNAEKVFDEMRVRGIE   81 (307)
Q Consensus         3 ~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~~~~-~~~~a~~~~~~~~~~~~~   81 (307)
                      +...+..++..+...|++++|..+++++.+.. +.+...+..+...+..          .+ ++++|.+.|++..+.. +
T Consensus        55 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~----------~~~~~~~A~~~~~~a~~~~-~  122 (330)
T 3hym_B           55 HASCLPVHIGTLVELNKANELFYLSHKLVDLY-PSNPVSWFAVGCYYLM----------VGHKNEHARRYLSKATTLE-K  122 (330)
T ss_dssp             CTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSTHHHHHHHHHHHH----------SCSCHHHHHHHHHHHHTTC-T
T ss_pred             ChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHH----------hhhhHHHHHHHHHHHHHhC-C
Confidence            34556678888999999999999999998863 3366788888888888          66 7899999999998774 3


Q ss_pred             CCHHHHHHHHHHHHhcCCchhHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHhhHHHHH
Q 021791           82 PDVTSFSIVLHVYSRAHKPQLSLDKLNFMKEKGICPTVATYTSVVKCLCSCGRIEDAEELLGEMVRNGVSPSAETYNCFF  161 (307)
Q Consensus        82 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~  161 (307)
                      .+...|..+...+...|++++|.+.++.+.+.... +...+..+...|...|++++|...+++....... +...+..+.
T Consensus       123 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~l~  200 (330)
T 3hym_B          123 TYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKG-CHLPMLYIGLEYGLTNNSKLAERFFSQALSIAPE-DPFVMHEVG  200 (330)
T ss_dssp             TCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTT-CSHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTT-CHHHHHHHH
T ss_pred             ccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccc-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCCC-ChHHHHHHH
Confidence            46778999999999999999999999999887543 5677888999999999999999999999987543 678899999


Q ss_pred             HHHhcCCChhHHHHHHHHHhhcCC-------CCccHHHHHHHHHHHHhcCcHHHHHHHHHHHhhCCCCCCHHhHHHHHHH
Q 021791          162 KEYRGRKDANGAMKLYRQMKEDDL-------CVPNIHTYNILIGMFMALNRMDMVREIWNHVKGSELGLDLDSYTMLIHG  234 (307)
Q Consensus       162 ~~~~~~~~~~~a~~~~~~~~~~~~-------~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~  234 (307)
                      ..+...|++++|...+++......       .+.+..++..+...+...|++++|...++...+... .+...+..+..+
T Consensus       201 ~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~-~~~~~~~~la~~  279 (330)
T 3hym_B          201 VVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQALVLIP-QNASTYSAIGYI  279 (330)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST-TCSHHHHHHHHH
T ss_pred             HHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhCc-cchHHHHHHHHH
Confidence            999999999999999999876421       023457899999999999999999999999988643 377889999999


Q ss_pred             HHccCcHHHHHHHHHHHHHcCCCCcHhhHHHHHHHH-hhchhHH
Q 021791          235 LCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGL-IQSDMLR  277 (307)
Q Consensus       235 ~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~-~~~g~~~  277 (307)
                      +...|++++|...+++..+.. +.+...+..+..++ ...|+.+
T Consensus       280 ~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~g~~~  322 (330)
T 3hym_B          280 HSLMGNFENAVDYFHTALGLR-RDDTFSVTMLGHCIEMYIGDSE  322 (330)
T ss_dssp             HHHHTCHHHHHHHHHTTTTTC-SCCHHHHHHHHHHHHTTTTC--
T ss_pred             HHHhccHHHHHHHHHHHHccC-CCchHHHHHHHHHHHHHhCchh
Confidence            999999999999999988652 23566777777777 5566554

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A

Probab=99.82  E-value=3.3e-17  Score=139.86  Aligned_cols=267  Identities=11%  Similarity=0.030  Sum_probs=213.6

Q ss_pred             HHHHHHHHHHHHhcCchhhHHHHHHHHHhcCCCCcHHHHHHHHHHHHhhCCCCcchhhHHHHHHHHHHHHHHHhcCCCCC
Q 021791            4 VKMYTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPNERFEKTIRNAEKVFDEMRVRGIEPD   83 (307)
Q Consensus         4 ~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~   83 (307)
                      +..|..+...+.+.|++++|.+.|+++.... +.+...|..+..++..          .|++++|++.|+++.+.. +.+
T Consensus        25 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~----------~g~~~~A~~~~~~al~~~-p~~   92 (537)
T 3fp2_A           25 AVQLKNRGNHFFTAKNFNEAIKYYQYAIELD-PNEPVFYSNISACYIS----------TGDLEKVIEFTTKALEIK-PDH   92 (537)
T ss_dssp             HHHHHHHHHHHHHTTCCC-CHHHHHHHHHHC-TTCHHHHHHHHHHHHH----------HTCHHHHHHHHHHHHHHC-TTC
T ss_pred             HHHHHHHHHHHHHhccHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHH----------cCCHHHHHHHHHHHHhcC-Cch
Confidence            4567778888888888888888888888763 3366778888888888          778888888888887764 346


Q ss_pred             HHHHHHHHHHHHhcCCchhHHHHHHHH-----------------------------------------------------
Q 021791           84 VTSFSIVLHVYSRAHKPQLSLDKLNFM-----------------------------------------------------  110 (307)
Q Consensus        84 ~~~~~~ll~~~~~~~~~~~a~~~~~~~-----------------------------------------------------  110 (307)
                      ...+..+..++...|++++|...|+.+                                                     
T Consensus        93 ~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~  172 (537)
T 3fp2_A           93 SKALLRRASANESLGNFTDAMFDLSVLSLNGDFDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFG  172 (537)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHC-----------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHH
Confidence            777888888888888888887766422                                                     


Q ss_pred             --------------------------------------------------------HHcCCCCc--------hhhHHHHH
Q 021791          111 --------------------------------------------------------KEKGICPT--------VATYTSVV  126 (307)
Q Consensus       111 --------------------------------------------------------~~~~~~~~--------~~~~~~ll  126 (307)
                                                                              .+.  .|+        ..++..+.
T Consensus       173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~--~p~~~~~~~~~~~~~~~~g  250 (537)
T 3fp2_A          173 IFDSHLEVSSVNTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSA--NTVDDPLRENAALALCYTG  250 (537)
T ss_dssp             TSCHHHHHHTSCCCCSSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC----CCCHHHHHHHHHHHHHHH
T ss_pred             hcChHHHHHHHhhccccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHH--CCCcchhhHHHHHHHHHHH
Confidence                                                                    111  122        22455666


Q ss_pred             HHHHhcCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHhcCCChhHHHHHHHHHhhcCCCCccHHHHHHHHHHHHhcCcH
Q 021791          127 KCLCSCGRIEDAEELLGEMVRNGVSPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDDLCVPNIHTYNILIGMFMALNRM  206 (307)
Q Consensus       127 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~  206 (307)
                      ..+...|++++|...++++....  |+...+..+...+...|++++|...+++.....  +.+..++..+...+...|++
T Consensus       251 ~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~  326 (537)
T 3fp2_A          251 IFHFLKNNLLDAQVLLQESINLH--PTPNSYIFLALTLADKENSQEFFKFFQKAVDLN--PEYPPTYYHRGQMYFILQDY  326 (537)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCH
T ss_pred             HHHHhcccHHHHHHHHHHHHhcC--CCchHHHHHHHHHHHhcCHHHHHHHHHHHhccC--CCCHHHHHHHHHHHHhcCCH
Confidence            77888899999999999998864  457888889999999999999999999998875  56788899999999999999


Q ss_pred             HHHHHHHHHHhhCCCCCCHHhHHHHHHHHHccCcHHHHHHHHHHHHHcCCCCcHhhHHHHHHHHhhchhHHHHHHHHHHh
Q 021791          207 DMVREIWNHVKGSELGLDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKL  286 (307)
Q Consensus       207 ~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~  286 (307)
                      ++|...++.+..... .+...+..+..++...|++++|...++++.+.. +.+...+..+...+...|++++|...+++.
T Consensus       327 ~~A~~~~~~a~~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a  404 (537)
T 3fp2_A          327 KNAKEDFQKAQSLNP-ENVYPYIQLACLLYKQGKFTESEAFFNETKLKF-PTLPEVPTFFAEILTDRGDFDTAIKQYDIA  404 (537)
T ss_dssp             HHHHHHHHHHHHHCT-TCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence            999999999988643 257788999999999999999999999998873 345668888899999999999999999998


Q ss_pred             hhcC
Q 021791          287 DEES  290 (307)
Q Consensus       287 ~~~~  290 (307)
                      .+..
T Consensus       405 ~~~~  408 (537)
T 3fp2_A          405 KRLE  408 (537)
T ss_dssp             HHHH
T ss_pred             HHcC
Confidence            6654

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A

Probab=99.82  E-value=6.4e-17  Score=138.08  Aligned_cols=280  Identities=10%  Similarity=-0.001  Sum_probs=221.7

Q ss_pred             cHHHHHHHHHHHHhcCchhhHHHHHHHHHhcCCCCcHHHHHHHHHHHHhhCCCCcchhh---------------------
Q 021791            3 NVKMYTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPNERF---------------------   61 (307)
Q Consensus         3 ~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~~---------------------   61 (307)
                      ++..|..+..+|...|++++|++.|+++.+.+ +.+...+..+..++...|++..+...                     
T Consensus        58 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~  136 (537)
T 3fp2_A           58 EPVFYSNISACYISTGDLEKVIEFTTKALEIK-PDHSKALLRRASANESLGNFTDAMFDLSVLSLNGDFDGASIEPMLER  136 (537)
T ss_dssp             CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHC-----------CHHHH
T ss_pred             CcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CchHHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCChHHHHHHHHH
Confidence            56788888888889999999999999888763 23566777777777776554333210                     


Q ss_pred             ------------------------------------------------------------------------------HH
Q 021791           62 ------------------------------------------------------------------------------EK   63 (307)
Q Consensus        62 ------------------------------------------------------------------------------~~   63 (307)
                                                                                                    .+
T Consensus       137 ~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~  216 (537)
T 3fp2_A          137 NLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHLEVSSVNTSSNYDTAYALLSDALQRLYSATDEGYLVAND  216 (537)
T ss_dssp             HHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCHHHHHHTSCCCCSSCSSHHHHHHHHHHHHTCSHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcChHHHHHHHhhccccccHHHHHHHHHHHHHHhhhhhhHHHHH
Confidence                                                                                          13


Q ss_pred             HHHHHHHHHHHHHhcCCCCC-------HHHHHHHHHHHHhcCCchhHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCChH
Q 021791           64 TIRNAEKVFDEMRVRGIEPD-------VTSFSIVLHVYSRAHKPQLSLDKLNFMKEKGICPTVATYTSVVKCLCSCGRIE  136 (307)
Q Consensus        64 ~~~~a~~~~~~~~~~~~~~~-------~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~  136 (307)
                      ++++|..+++++.+.. +.+       ..++..+...+...|++++|.+.++...+..  |+..++..+...+...|+++
T Consensus       217 ~~~~A~~~~~~~l~~~-p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~  293 (537)
T 3fp2_A          217 LLTKSTDMYHSLLSAN-TVDDPLRENAALALCYTGIFHFLKNNLLDAQVLLQESINLH--PTPNSYIFLALTLADKENSQ  293 (537)
T ss_dssp             HHHHHHHHHHHHHC---CCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHTCCSSCCH
T ss_pred             HHHHHHHHHHHHHHHC-CCcchhhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhcC--CCchHHHHHHHHHHHhcCHH
Confidence            6677777777777653 112       2356677788889999999999999999874  45788999999999999999


Q ss_pred             HHHHHHHHHHhCCCCCCHhhHHHHHHHHhcCCChhHHHHHHHHHhhcCCCCccHHHHHHHHHHHHhcCcHHHHHHHHHHH
Q 021791          137 DAEELLGEMVRNGVSPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDDLCVPNIHTYNILIGMFMALNRMDMVREIWNHV  216 (307)
Q Consensus       137 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~  216 (307)
                      +|...++++...... +..++..+...+...|++++|...+++.....  +.+..++..+...+...|++++|...++.+
T Consensus       294 ~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~la~~~~~~g~~~~A~~~~~~~  370 (537)
T 3fp2_A          294 EFFKFFQKAVDLNPE-YPPTYYHRGQMYFILQDYKNAKEDFQKAQSLN--PENVYPYIQLACLLYKQGKFTESEAFFNET  370 (537)
T ss_dssp             HHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCSHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHhccCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            999999999887543 68889999999999999999999999999875  556788999999999999999999999999


Q ss_pred             hhCCCCCCHHhHHHHHHHHHccCcHHHHHHHHHHHHHcCC-----CCcHhhHHHHHHHHhhc----------hhHHHHHH
Q 021791          217 KGSELGLDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGL-----LPQKVTFETLYRGLIQS----------DMLRTWRR  281 (307)
Q Consensus       217 ~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~-----~p~~~~~~~l~~~~~~~----------g~~~~a~~  281 (307)
                      .... +.+...+..+...+...|++++|...|+++.+...     ......+......+...          |++++|..
T Consensus       371 ~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~  449 (537)
T 3fp2_A          371 KLKF-PTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIK  449 (537)
T ss_dssp             HHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHH
T ss_pred             HHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHH
Confidence            8874 33677899999999999999999999999877521     11112244445667777          99999999


Q ss_pred             HHHHhhhcC
Q 021791          282 LKKKLDEES  290 (307)
Q Consensus       282 ~~~~~~~~~  290 (307)
                      .+++..+..
T Consensus       450 ~~~~a~~~~  458 (537)
T 3fp2_A          450 LLTKACELD  458 (537)
T ss_dssp             HHHHHHHHC
T ss_pred             HHHHHHHhC
Confidence            999987654

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}

Probab=99.80  E-value=5.5e-17  Score=125.03  Aligned_cols=227  Identities=13%  Similarity=0.055  Sum_probs=194.7

Q ss_pred             cHHHHHHHHHHHHhcCchhhHHHHHHHHHhcCCCCcHHHHHHHHHHHHhhCCCCcchhhHHHHHHHHHHHHHHHhcCC--
Q 021791            3 NVKMYTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPNERFEKTIRNAEKVFDEMRVRGI--   80 (307)
Q Consensus         3 ~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~--   80 (307)
                      .+..|..+...+...|++++|.+.|++..+..  .+...+..+..++..          .|++++|.+.+++..+...  
T Consensus         4 ~a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~----------~~~~~~A~~~~~~a~~~~~~~   71 (258)
T 3uq3_A            4 MADKEKAEGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYE----------KGEYETAISTLNDAVEQGREM   71 (258)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHH----------TTCHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHH----------cccHHHHHHHHHHHHHhCccc
Confidence            45678899999999999999999999999887  788899999999999          8889999999999877521  


Q ss_pred             CCC----HHHHHHHHHHHHhcCCchhHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHhh
Q 021791           81 EPD----VTSFSIVLHVYSRAHKPQLSLDKLNFMKEKGICPTVATYTSVVKCLCSCGRIEDAEELLGEMVRNGVSPSAET  156 (307)
Q Consensus        81 ~~~----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~  156 (307)
                      .++    ..++..+...+...|++++|...++...+..  |+.       ..+...|++++|...++++...... +...
T Consensus        72 ~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~--~~~-------~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~  141 (258)
T 3uq3_A           72 RADYKVISKSFARIGNAYHKLGDLKKTIEYYQKSLTEH--RTA-------DILTKLRNAEKELKKAEAEAYVNPE-KAEE  141 (258)
T ss_dssp             TCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCH-------HHHHHHHHHHHHHHHHHHHHHCCHH-HHHH
T ss_pred             ccchHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHhcC--chh-------HHHHHHhHHHHHHHHHHHHHHcCcc-hHHH
Confidence            112    5788999999999999999999999998864  342       3566778899999999999886432 5678


Q ss_pred             HHHHHHHHhcCCChhHHHHHHHHHhhcCCCCccHHHHHHHHHHHHhcCcHHHHHHHHHHHhhCCCCCCHHhHHHHHHHHH
Q 021791          157 YNCFFKEYRGRKDANGAMKLYRQMKEDDLCVPNIHTYNILIGMFMALNRMDMVREIWNHVKGSELGLDLDSYTMLIHGLC  236 (307)
Q Consensus       157 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~  236 (307)
                      +..+...+...|++++|...+++.....  +.+..++..+...+...|++++|...++.+.... +.+...|..+..++.
T Consensus       142 ~~~~~~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~  218 (258)
T 3uq3_A          142 ARLEGKEYFTKSDWPNAVKAYTEMIKRA--PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKD-PNFVRAYIRKATAQI  218 (258)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhcCHHHHHHHHHHHHhcC--cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-HHHHHHHHHHHHHHH
Confidence            8888999999999999999999998876  5678899999999999999999999999998864 336788999999999


Q ss_pred             ccCcHHHHHHHHHHHHHc
Q 021791          237 EKQKWKEACQYFVEMIEK  254 (307)
Q Consensus       237 ~~g~~~~a~~~~~~~~~~  254 (307)
                      ..|++++|...+++..+.
T Consensus       219 ~~g~~~~A~~~~~~a~~~  236 (258)
T 3uq3_A          219 AVKEYASALETLDAARTK  236 (258)
T ss_dssp             HTTCHHHHHHHHHHHHHH
T ss_pred             HHhhHHHHHHHHHHHHHh
Confidence            999999999999998765

>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}

Probab=99.80  E-value=1.3e-16  Score=125.25  Aligned_cols=247  Identities=11%  Similarity=0.104  Sum_probs=198.5

Q ss_pred             HHHHHHHHHHhcCchhhHHHHHHHHHhcCCCCcHHHHHHHHHHHHhhCCCCcchhhHHHHHHHHHHHHHHHhcCCCC-CH
Q 021791            6 MYTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPNERFEKTIRNAEKVFDEMRVRGIEP-DV   84 (307)
Q Consensus         6 ~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~   84 (307)
                      ..-.+.++|...|+++.|+..++.    .-+|+..++..+...+..          .++.++|++.++++...+..| +.
T Consensus        36 ~~~~l~r~yi~~g~~~~al~~~~~----~~~~~~~a~~~la~~~~~----------~~~~~~A~~~l~~ll~~~~~P~~~  101 (291)
T 3mkr_A           36 RDVFLYRAYLAQRKYGVVLDEIKP----SSAPELQAVRMFAEYLAS----------HSRRDAIVAELDREMSRSVDVTNT  101 (291)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHSCT----TSCHHHHHHHHHHHHHHC----------STTHHHHHHHHHHHHHSCCCCSCH
T ss_pred             HHHHHHHHHHHCCCHHHHHHHhcc----cCChhHHHHHHHHHHHcC----------CCcHHHHHHHHHHHHhcccCCCCH
Confidence            445578999999999999986654    235677788888888888          778899999999998876544 56


Q ss_pred             HHHHHHHHHHHhcCCchhHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHhhH---HHHH
Q 021791           85 TSFSIVLHVYSRAHKPQLSLDKLNFMKEKGICPTVATYTSVVKCLCSCGRIEDAEELLGEMVRNGVSPSAETY---NCFF  161 (307)
Q Consensus        85 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~---~~l~  161 (307)
                      ..+..+...+...|++++|++.++.      +.+...+..++..+.+.|++++|...++++.+..  |+....   ..++
T Consensus       102 ~~~~~la~~~~~~g~~~~Al~~l~~------~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~--p~~~~~~l~~a~~  173 (291)
T 3mkr_A          102 TFLLMAASIYFYDQNPDAALRTLHQ------GDSLECMAMTVQILLKLDRLDLARKELKKMQDQD--EDATLTQLATAWV  173 (291)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHTT------CCSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHhC------CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC--cCcHHHHHHHHHH
Confidence            6777888999999999999999987      4578899999999999999999999999999874  443211   2334


Q ss_pred             HHHhcCCChhHHHHHHHHHhhcCCCCccHHHHHHHHHHHHhcCcHHHHHHHHHHHhhCCCCCCHHhHHHHHHHHHccCcH
Q 021791          162 KEYRGRKDANGAMKLYRQMKEDDLCVPNIHTYNILIGMFMALNRMDMVREIWNHVKGSELGLDLDSYTMLIHGLCEKQKW  241 (307)
Q Consensus       162 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~  241 (307)
                      ..+...|++++|..+|+++.+..  +.+...++.+..++.+.|++++|...++++..... -+..++..++..+...|+.
T Consensus       174 ~l~~~~~~~~eA~~~~~~~l~~~--p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p-~~~~~l~~l~~~~~~~g~~  250 (291)
T 3mkr_A          174 SLAAGGEKLQDAYYIFQEMADKC--SPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDS-GHPETLINLVVLSQHLGKP  250 (291)
T ss_dssp             HHHHCTTHHHHHHHHHHHHHHHS--CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCC
T ss_pred             HHHhCchHHHHHHHHHHHHHHhC--CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCC
Confidence            45556799999999999999885  78899999999999999999999999999988753 3788899999999999998


Q ss_pred             HH-HHHHHHHHHHcCCCCcHhhHHHHHHHHhhchhHHHHHHH
Q 021791          242 KE-ACQYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRL  282 (307)
Q Consensus       242 ~~-a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~  282 (307)
                      ++ +..+++++++.  .|+...   +.+...+.+.++++..-
T Consensus       251 ~eaa~~~~~~~~~~--~P~~~~---~~d~~~~~~~fd~~~~~  287 (291)
T 3mkr_A          251 PEVTNRYLSQLKDA--HRSHPF---IKEYRAKENDFDRLVLQ  287 (291)
T ss_dssp             HHHHHHHHHHHHHH--CTTCHH---HHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHh--CCCChH---HHHHHHHHHHHHHHHHH
Confidence            75 67899999875  455433   23445666666666543

>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}

Probab=99.79  E-value=3.9e-17  Score=122.78  Aligned_cols=201  Identities=8%  Similarity=-0.058  Sum_probs=164.8

Q ss_pred             CCCHHHHHHHHHHHHhcCCchhHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHhhHHHH
Q 021791           81 EPDVTSFSIVLHVYSRAHKPQLSLDKLNFMKEKGICPTVATYTSVVKCLCSCGRIEDAEELLGEMVRNGVSPSAETYNCF  160 (307)
Q Consensus        81 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l  160 (307)
                      +++...+..+...+.+.|++++|...|+...+.... +...+..+...+.+.|++++|...+++..+..+. +...+..+
T Consensus         2 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~l   79 (217)
T 2pl2_A            2 QTAEQNPLRLGVQLYALGRYDAALTLFERALKENPQ-DPEALYWLARTQLKLGLVNPALENGKTLVARTPR-YLGGYMVL   79 (217)
T ss_dssp             --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSS-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHH
T ss_pred             CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-cHHHHHHH
Confidence            567778889999999999999999999999987543 7888999999999999999999999999987544 67888999


Q ss_pred             HHHHhcC-----------CChhHHHHHHHHHhhcCCCCccHHHHHHHHHHHHhcCcHHHHHHHHHHHhhCCCCCCHHhHH
Q 021791          161 FKEYRGR-----------KDANGAMKLYRQMKEDDLCVPNIHTYNILIGMFMALNRMDMVREIWNHVKGSELGLDLDSYT  229 (307)
Q Consensus       161 ~~~~~~~-----------~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~  229 (307)
                      ...+...           |++++|...+++..+..  +.+...+..+..++...|++++|+..+++..+..  .+...+.
T Consensus        80 g~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~--P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~  155 (217)
T 2pl2_A           80 SEAYVALYRQAEDRERGKGYLEQALSVLKDAERVN--PRYAPLHLQRGLVYALLGERDKAEASLKQALALE--DTPEIRS  155 (217)
T ss_dssp             HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHH
T ss_pred             HHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhC--cccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc--cchHHHH
Confidence            9999999           99999999999999875  5678899999999999999999999999999887  5889999


Q ss_pred             HHHHHHHccCcHHHHHHHHHHHHHcCCCCcHhhHHHHHHHHhhchhHHHHHHHHHHhhh
Q 021791          230 MLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDE  288 (307)
Q Consensus       230 ~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~  288 (307)
                      .+..+|...|++++|+..|++.++.. +.+...+..+...+...|++++|...+++...
T Consensus       156 ~la~~~~~~g~~~~A~~~~~~al~~~-P~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~  213 (217)
T 2pl2_A          156 ALAELYLSMGRLDEALAQYAKALEQA-PKDLDLRVRYASALLLKGKAEEAARAAALEHH  213 (217)
T ss_dssp             HHHHHHHHHTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHTC----------------
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHccCHHHHHHHHHHHhh
Confidence            99999999999999999999999863 34567788899999999999999999987654

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A

Probab=99.78  E-value=1.3e-16  Score=127.35  Aligned_cols=237  Identities=8%  Similarity=-0.054  Sum_probs=197.4

Q ss_pred             cHHHHHHHHHHHHhhCCCCcchhhHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCchhHHHHHHHHHHcCCCC
Q 021791           38 NVVTYNVLLNGVCRRASLHPNERFEKTIRNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHKPQLSLDKLNFMKEKGICP  117 (307)
Q Consensus        38 ~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~  117 (307)
                      +...+..+...+..          .+++++|..+|+++.+.. +.+...+..+..++...|++++|.+.++.+.+... .
T Consensus        20 ~~~~~~~~a~~~~~----------~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~-~   87 (327)
T 3cv0_A           20 YHENPMEEGLSMLK----------LANLAEAALAFEAVCQAA-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLDP-K   87 (327)
T ss_dssp             GSSCHHHHHHHHHH----------TTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-T
T ss_pred             hhHHHHHHHHHHHH----------hccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCc-C
Confidence            34456666777777          788999999999998874 44788899999999999999999999999988753 3


Q ss_pred             chhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHhhHHHH--------------HH-HHhcCCChhHHHHHHHHHhh
Q 021791          118 TVATYTSVVKCLCSCGRIEDAEELLGEMVRNGVSPSAETYNCF--------------FK-EYRGRKDANGAMKLYRQMKE  182 (307)
Q Consensus       118 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l--------------~~-~~~~~~~~~~a~~~~~~~~~  182 (307)
                      +..++..+...+...|++++|...++++...... +...+..+              .. .+...|++++|...++++.+
T Consensus        88 ~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~  166 (327)
T 3cv0_A           88 DIAVHAALAVSHTNEHNANAALASLRAWLLSQPQ-YEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALE  166 (327)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTT-TTTC--------------------CCTTSHHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCc-cHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHh
Confidence            7788999999999999999999999999886433 33333333              22 37788999999999999998


Q ss_pred             cCCCCccHHHHHHHHHHHHhcCcHHHHHHHHHHHhhCCCCCCHHhHHHHHHHHHccCcHHHHHHHHHHHHHcCCCCcHhh
Q 021791          183 DDLCVPNIHTYNILIGMFMALNRMDMVREIWNHVKGSELGLDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVT  262 (307)
Q Consensus       183 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~  262 (307)
                      ..  +.+..++..+...+...|++++|.+.++.+.... +.+...+..+...+...|++++|...++++.+.. +.+..+
T Consensus       167 ~~--~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~  242 (327)
T 3cv0_A          167 MN--PNDAQLHASLGVLYNLSNNYDSAAANLRRAVELR-PDDAQLWNKLGATLANGNRPQEALDAYNRALDIN-PGYVRV  242 (327)
T ss_dssp             HS--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHH
T ss_pred             hC--CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHH
Confidence            76  5678899999999999999999999999998764 3367889999999999999999999999998863 346778


Q ss_pred             HHHHHHHHhhchhHHHHHHHHHHhhhcCC
Q 021791          263 FETLYRGLIQSDMLRTWRRLKKKLDEESI  291 (307)
Q Consensus       263 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~  291 (307)
                      +..+...+...|++++|.+.+++..+...
T Consensus       243 ~~~l~~~~~~~g~~~~A~~~~~~a~~~~~  271 (327)
T 3cv0_A          243 MYNMAVSYSNMSQYDLAAKQLVRAIYMQV  271 (327)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHhccHHHHHHHHHHHHHhCC
Confidence            89999999999999999999998866543

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}

Probab=99.77  E-value=1.8e-16  Score=122.18  Aligned_cols=227  Identities=10%  Similarity=0.023  Sum_probs=194.7

Q ss_pred             HHHHHHHHHHHHhhCCCCcchhhHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCchhHHHHHHHHHHcCCC--
Q 021791           39 VVTYNVLLNGVCRRASLHPNERFEKTIRNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHKPQLSLDKLNFMKEKGIC--  116 (307)
Q Consensus        39 ~~~~~~ll~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~--  116 (307)
                      ...+..+...+..          .|++++|...|++..+..  .+...+..+..++...|++++|.+.++...+....  
T Consensus         5 a~~~~~~g~~~~~----------~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~   72 (258)
T 3uq3_A            5 ADKEKAEGNKFYK----------ARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMR   72 (258)
T ss_dssp             HHHHHHHHHHHHH----------TTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHH----------hccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccc
Confidence            4567777788888          788999999999999887  78889999999999999999999999998775321  


Q ss_pred             Cc----hhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHhcCCChhHHHHHHHHHhhcCCCCccHHH
Q 021791          117 PT----VATYTSVVKCLCSCGRIEDAEELLGEMVRNGVSPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDDLCVPNIHT  192 (307)
Q Consensus       117 ~~----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~  192 (307)
                      ++    ..++..+...+...|++++|...|++.....  |+.       ..+...|++++|...++......  +.+...
T Consensus        73 ~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~--~~~-------~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~  141 (258)
T 3uq3_A           73 ADYKVISKSFARIGNAYHKLGDLKKTIEYYQKSLTEH--RTA-------DILTKLRNAEKELKKAEAEAYVN--PEKAEE  141 (258)
T ss_dssp             CCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCH-------HHHHHHHHHHHHHHHHHHHHHCC--HHHHHH
T ss_pred             cchHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHhcC--chh-------HHHHHHhHHHHHHHHHHHHHHcC--cchHHH
Confidence            12    5788999999999999999999999998853  443       34566788999999999998875  567788


Q ss_pred             HHHHHHHHHhcCcHHHHHHHHHHHhhCCCCCCHHhHHHHHHHHHccCcHHHHHHHHHHHHHcCCCCcHhhHHHHHHHHhh
Q 021791          193 YNILIGMFMALNRMDMVREIWNHVKGSELGLDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQ  272 (307)
Q Consensus       193 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~  272 (307)
                      +..+...+...|++++|...++.+..... .+...+..+..++...|++++|...+++.++.. +.+..++..+...+..
T Consensus       142 ~~~~~~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~  219 (258)
T 3uq3_A          142 ARLEGKEYFTKSDWPNAVKAYTEMIKRAP-EDARGYSNRAAALAKLMSFPEAIADCNKAIEKD-PNFVRAYIRKATAQIA  219 (258)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhcCHHHHHHHHHHHHhcCc-ccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-HHHHHHHHHHHHHHHH
Confidence            99999999999999999999999988643 378889999999999999999999999999873 3457788999999999


Q ss_pred             chhHHHHHHHHHHhhhcC
Q 021791          273 SDMLRTWRRLKKKLDEES  290 (307)
Q Consensus       273 ~g~~~~a~~~~~~~~~~~  290 (307)
                      .|++++|...+++..+..
T Consensus       220 ~g~~~~A~~~~~~a~~~~  237 (258)
T 3uq3_A          220 VKEYASALETLDAARTKD  237 (258)
T ss_dssp             TTCHHHHHHHHHHHHHHH
T ss_pred             HhhHHHHHHHHHHHHHhC
Confidence            999999999999886554

>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3

Probab=99.75  E-value=1.4e-17  Score=134.45  Aligned_cols=206  Identities=9%  Similarity=0.050  Sum_probs=70.2

Q ss_pred             ccHHHHHHHHHHHHhcCchhhHHHHHHHHHhcCCCCcHHHHHHHHHHHHhhCCCCcchhhHHHHHHHHHHHHHHHhcCCC
Q 021791            2 PNVKMYTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPNERFEKTIRNAEKVFDEMRVRGIE   81 (307)
Q Consensus         2 p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~   81 (307)
                      |+..+|..++.++.+.|++++|++.|.+.      +|..+|..++.++..          .|++++|++.++...+.  .
T Consensus        30 ~~~~vWs~La~A~l~~g~~~eAIdsfika------~D~~~y~~V~~~ae~----------~g~~EeAi~yl~~ark~--~   91 (449)
T 1b89_A           30 NEPAVWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANT----------SGNWEELVKYLQMARKK--A   91 (449)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             CChHHHHHHHHHHHHcCCHHHHHHHHHcC------CCHHHHHHHHHHHHh----------CCCHHHHHHHHHHHHHh--C
Confidence            34557777777777777777777777542      456677777777766          66777777766555543  3


Q ss_pred             CCHHHHHHHHHHHHhcCCchhHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHhhHHHHH
Q 021791           82 PDVTSFSIVLHVYSRAHKPQLSLDKLNFMKEKGICPTVATYTSVVKCLCSCGRIEDAEELLGEMVRNGVSPSAETYNCFF  161 (307)
Q Consensus        82 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~  161 (307)
                      +++.+.+.++.+|.+.|+++++.++++       .|+..+|+.+...|...|.+++|...|..+         ..|..++
T Consensus        92 ~~~~i~~~Li~~Y~Klg~l~e~e~f~~-------~pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a---------~n~~~LA  155 (449)
T 1b89_A           92 RESYVETELIFALAKTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLA  155 (449)
T ss_dssp             -----------------CHHHHTTTTT-------CC----------------CTTTHHHHHHHT---------TCHHHHH
T ss_pred             ccchhHHHHHHHHHHhCCHHHHHHHHc-------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHh---------hhHHHHH
Confidence            445666677777777777777666663       245557777777777777777777777655         3666777


Q ss_pred             HHHhcCCChhHHHHHHHHHhhcCCCCccHHHHHHHHHHHHhcCcHHHHHHHHHHHhhCCCCCCHHhHHHHHHHHHccCcH
Q 021791          162 KEYRGRKDANGAMKLYRQMKEDDLCVPNIHTYNILIGMFMALNRMDMVREIWNHVKGSELGLDLDSYTMLIHGLCEKQKW  241 (307)
Q Consensus       162 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~  241 (307)
                      .++.+.|++++|.+.++++       .++.+|..++.+|...|+++.|......+     ...+.....++..|.+.|++
T Consensus       156 ~~L~~Lg~yq~AVea~~KA-------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~L-----~~~ad~l~~lv~~Yek~G~~  223 (449)
T 1b89_A          156 STLVHLGEYQAAVDGARKA-------NSTRTWKEVCFACVDGKEFRLAQMCGLHI-----VVHADELEELINYYQDRGYF  223 (449)
T ss_dssp             HHHHTTTCHHHHHHHHHHH-------TCHHHHHHHHHHHHHTTCHHHHHHTTTTT-----TTCHHHHHHHHHHHHHTTCH
T ss_pred             HHHHHhccHHHHHHHHHHc-------CCchhHHHHHHHHHHcCcHHHHHHHHHHH-----HhCHhhHHHHHHHHHHCCCH
Confidence            7777777777777777766       14566777777777777777774443322     22333344566667777777


Q ss_pred             HHHHHHHHHHHH
Q 021791          242 KEACQYFVEMIE  253 (307)
Q Consensus       242 ~~a~~~~~~~~~  253 (307)
                      ++|..+++..+.
T Consensus       224 eEai~lLe~aL~  235 (449)
T 1b89_A          224 EELITMLEAALG  235 (449)
T ss_dssp             HHHHHHHHHHTT
T ss_pred             HHHHHHHHHHhC
Confidence            777777766653

>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...

Probab=99.75  E-value=5e-15  Score=120.20  Aligned_cols=248  Identities=9%  Similarity=0.030  Sum_probs=204.4

Q ss_pred             cHHHHHHHHHHHHhcCchhhHHHHHHHHHhcCCCCcHHHHHHHHHHHHhhCCCCcchhhHHH-HHHHHHHHHHHHhcCCC
Q 021791            3 NVKMYTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPNERFEKT-IRNAEKVFDEMRVRGIE   81 (307)
Q Consensus         3 ~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~-~~~a~~~~~~~~~~~~~   81 (307)
                      +..+|+.+...+...|++++|++.|++.+... +-+...|+.+..++..          .|+ +++|+..|++..+.. +
T Consensus        96 ~~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~-P~~~~a~~~~g~~l~~----------~g~d~~eAl~~~~~al~l~-P  163 (382)
T 2h6f_A           96 FRDVYDYFRAVLQRDERSERAFKLTRDAIELN-AANYTVWHFRRVLLKS----------LQKDLHEEMNYITAIIEEQ-P  163 (382)
T ss_dssp             HHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH----------TTCCHHHHHHHHHHHHHHC-T
T ss_pred             hHHHHHHHHHHHHHCCChHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHH----------cccCHHHHHHHHHHHHHHC-C
Confidence            35678889999999999999999999999873 2256788888888888          776 999999999999875 3


Q ss_pred             CCHHHHHHHHHHHHhcCCchhHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHhhHHHHH
Q 021791           82 PDVTSFSIVLHVYSRAHKPQLSLDKLNFMKEKGICPTVATYTSVVKCLCSCGRIEDAEELLGEMVRNGVSPSAETYNCFF  161 (307)
Q Consensus        82 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~  161 (307)
                      -+...|..+..++...|++++|+..|+++.+.... +...|..+..++.+.|++++|+..++++++.... +...|+.+.
T Consensus       164 ~~~~a~~~~g~~~~~~g~~~eAl~~~~kal~ldP~-~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~P~-~~~a~~~lg  241 (382)
T 2h6f_A          164 KNYQVWHHRRVLVEWLRDPSQELEFIADILNQDAK-NYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVR-NNSVWNQRY  241 (382)
T ss_dssp             TCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTT-CHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcc-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC-CHHHHHHHH
Confidence            37889999999999999999999999999998654 8889999999999999999999999999988655 788999999


Q ss_pred             HHHhc-CCChhHH-----HHHHHHHhhcCCCCccHHHHHHHHHHHHhcC--cHHHHHHHHHHHhhCCCCCCHHhHHHHHH
Q 021791          162 KEYRG-RKDANGA-----MKLYRQMKEDDLCVPNIHTYNILIGMFMALN--RMDMVREIWNHVKGSELGLDLDSYTMLIH  233 (307)
Q Consensus       162 ~~~~~-~~~~~~a-----~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~li~  233 (307)
                      .++.. .|..++|     +..+++.....  +-+...|..+...+...|  ++++|.+.+..+ +.. +.+...+..+..
T Consensus       242 ~~l~~l~~~~~eA~~~~el~~~~~Al~l~--P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~~-p~~~~al~~La~  317 (382)
T 2h6f_A          242 FVISNTTGYNDRAVLEREVQYTLEMIKLV--PHNESAWNYLKGILQDRGLSKYPNLLNQLLDL-QPS-HSSPYLIAFLVD  317 (382)
T ss_dssp             HHHHHTTCSCSHHHHHHHHHHHHHHHHHS--TTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TTT-CCCHHHHHHHHH
T ss_pred             HHHHHhcCcchHHHHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHccCccchHHHHHHHHHh-ccC-CCCHHHHHHHHH
Confidence            99988 6665777     58888888875  667889999999998888  689999999888 432 346778888999


Q ss_pred             HHHccC---------cHHHHHHHHHHH-HHcCCCCcH-hhHHHHHHHH
Q 021791          234 GLCEKQ---------KWKEACQYFVEM-IEKGLLPQK-VTFETLYRGL  270 (307)
Q Consensus       234 ~~~~~g---------~~~~a~~~~~~~-~~~~~~p~~-~~~~~l~~~~  270 (307)
                      +|.+.|         ..++|+.+++++ .+.  .|.. ..|..+...+
T Consensus       318 ~~~~~~~~~~~~~~~~~~~A~~~~~~l~~~~--DP~r~~~w~~~~~~l  363 (382)
T 2h6f_A          318 IYEDMLENQCDNKEDILNKALELCEILAKEK--DTIRKEYWRYIGRSL  363 (382)
T ss_dssp             HHHHHHHTTCSSHHHHHHHHHHHHHHHHHTT--CGGGHHHHHHHHHHH
T ss_pred             HHHHHhcccccchHHHHHHHHHHHHHHHHHh--CchhHHHHHHHHHHH
Confidence            998864         358999999998 543  4543 3455554444

>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}

Probab=99.75  E-value=3.3e-16  Score=117.71  Aligned_cols=197  Identities=10%  Similarity=0.011  Sum_probs=102.0

Q ss_pred             cHHHHHHHHHHHHhcCchhhHHHHHHHHHhcCCCCcHHHHHHHHHHHHhhCCCCcchhhHHHHHHHHHHHHHHHhcCCCC
Q 021791            3 NVKMYTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPNERFEKTIRNAEKVFDEMRVRGIEP   82 (307)
Q Consensus         3 ~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~   82 (307)
                      ++..+..+...+.+.|++++|...|++..+.. +.+...+..+..++.+          .|++++|+..+++..+.. +.
T Consensus         4 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~----------~g~~~~A~~~~~~al~~~-P~   71 (217)
T 2pl2_A            4 AEQNPLRLGVQLYALGRYDAALTLFERALKEN-PQDPEALYWLARTQLK----------LGLVNPALENGKTLVART-PR   71 (217)
T ss_dssp             CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTS-SSCHHHHHHHHHHHHH----------TTCHHHHHHHHHHHHHHC-TT
T ss_pred             cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHH----------cCCHHHHHHHHHHHHHhC-CC
Confidence            55566666666666677777777666666542 2244555566666666          556666666666666553 23


Q ss_pred             CHHHHHHHHHHHHhc-----------CCchhHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCC
Q 021791           83 DVTSFSIVLHVYSRA-----------HKPQLSLDKLNFMKEKGICPTVATYTSVVKCLCSCGRIEDAEELLGEMVRNGVS  151 (307)
Q Consensus        83 ~~~~~~~ll~~~~~~-----------~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~  151 (307)
                      +...+..+..++...           |++++|...+++..+.... +...+..+...+...|++++|...|++..+..  
T Consensus        72 ~~~a~~~lg~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--  148 (217)
T 2pl2_A           72 YLGGYMVLSEAYVALYRQAEDRERGKGYLEQALSVLKDAERVNPR-YAPLHLQRGLVYALLGERDKAEASLKQALALE--  148 (217)
T ss_dssp             CHHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--
T ss_pred             cHHHHHHHHHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc--
Confidence            455666666666665           5555555555555554322 34445555555555555555555555555544  


Q ss_pred             CCHhhHHHHHHHHhcCCChhHHHHHHHHHhhcCCCCccHHHHHHHHHHHHhcCcHHHHHHHHHHH
Q 021791          152 PSAETYNCFFKEYRGRKDANGAMKLYRQMKEDDLCVPNIHTYNILIGMFMALNRMDMVREIWNHV  216 (307)
Q Consensus       152 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~  216 (307)
                      .+...+..+..++...|++++|...|++..+..  +.+...+..+...+...|++++|...++..
T Consensus       149 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--P~~~~~~~~la~~~~~~g~~~~A~~~~~~~  211 (217)
T 2pl2_A          149 DTPEIRSALAELYLSMGRLDEALAQYAKALEQA--PKDLDLRVRYASALLLKGKAEEAARAAALE  211 (217)
T ss_dssp             CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS--TTCHHHHHHHHHHHTC--------------
T ss_pred             cchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence            345555555555555555555555555555443  334444555555555555555555554443

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A

Probab=99.74  E-value=3.2e-15  Score=114.89  Aligned_cols=203  Identities=10%  Similarity=-0.006  Sum_probs=175.8

Q ss_pred             HHHHHHHHHHHHhcCCchhHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHhhHHHHHHH
Q 021791           84 VTSFSIVLHVYSRAHKPQLSLDKLNFMKEKGICPTVATYTSVVKCLCSCGRIEDAEELLGEMVRNGVSPSAETYNCFFKE  163 (307)
Q Consensus        84 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~  163 (307)
                      ...+..+...+...|++++|.+.++++.+... .+..++..+...|...|++++|.+.++++.+.... +...+..+...
T Consensus        37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~la~~  114 (252)
T 2ho1_A           37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEIDP-SSADAHAALAVVFQTEMEPKLADEEYRKALASDSR-NARVLNNYGGF  114 (252)
T ss_dssp             HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCC-ChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcC-cHHHHHHHHHH
Confidence            56788889999999999999999999988753 37788999999999999999999999999887543 67889999999


Q ss_pred             HhcCCChhHHHHHHHHHhhcCCCCccHHHHHHHHHHHHhcCcHHHHHHHHHHHhhCCCCCCHHhHHHHHHHHHccCcHHH
Q 021791          164 YRGRKDANGAMKLYRQMKEDDLCVPNIHTYNILIGMFMALNRMDMVREIWNHVKGSELGLDLDSYTMLIHGLCEKQKWKE  243 (307)
Q Consensus       164 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~  243 (307)
                      +...|++++|...++++...+..+.+...+..+...+...|++++|.+.++.+.... +.+...+..+...+...|++++
T Consensus       115 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~g~~~~  193 (252)
T 2ho1_A          115 LYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLN-RNQPSVALEMADLLYKEREYVP  193 (252)
T ss_dssp             HHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHH
T ss_pred             HHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHcCCHHH
Confidence            999999999999999998832214567888999999999999999999999988764 3368889999999999999999


Q ss_pred             HHHHHHHHHHcCCCCcHhhHHHHHHHHhhchhHHHHHHHHHHhhhcC
Q 021791          244 ACQYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDEES  290 (307)
Q Consensus       244 a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~  290 (307)
                      |...++++.+.. +.+...+..+...+...|+.++|.++++++.+..
T Consensus       194 A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~  239 (252)
T 2ho1_A          194 ARQYYDLFAQGG-GQNARSLLLGIRLAKVFEDRDTAASYGLQLKRLY  239 (252)
T ss_dssp             HHHHHHHHHTTS-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHhC-cCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHC
Confidence            999999998753 4566778888889999999999999999987654

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1

Probab=99.74  E-value=3.5e-16  Score=121.81  Aligned_cols=248  Identities=10%  Similarity=-0.030  Sum_probs=194.4

Q ss_pred             HhcCchhhHHHHHHHHHhcCCC---CcHHHHHHHHHHHHhhCCCCcchhhHHHHHHHHHHHHHHHhcCCCCCHHHHHHHH
Q 021791           15 CKINRIDMAERFLGEMIERGVE---PNVVTYNVLLNGVCRRASLHPNERFEKTIRNAEKVFDEMRVRGIEPDVTSFSIVL   91 (307)
Q Consensus        15 ~~~g~~~~a~~~~~~~~~~~~~---p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll   91 (307)
                      ...|++++|++.|+++.+....   .+...+..+...+..          .|++++|...|+++.+.. +.+...+..+.
T Consensus        16 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----------~~~~~~A~~~~~~al~~~-~~~~~~~~~la   84 (275)
T 1xnf_A           16 QPTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDS----------LGLRALARNDFSQALAIR-PDMPEVFNYLG   84 (275)
T ss_dssp             CCCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHH----------TTCHHHHHHHHHHHHHHC-CCCHHHHHHHH
T ss_pred             CccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHH----------cccHHHHHHHHHHHHHcC-CCcHHHHHHHH
Confidence            3568899999999999886321   246678888888888          888999999999998874 44788999999


Q ss_pred             HHHHhcCCchhHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHhcCCChh
Q 021791           92 HVYSRAHKPQLSLDKLNFMKEKGICPTVATYTSVVKCLCSCGRIEDAEELLGEMVRNGVSPSAETYNCFFKEYRGRKDAN  171 (307)
Q Consensus        92 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~  171 (307)
                      ..+...|++++|.+.+++..+.... +..++..+...|...|++++|...++++.+..  |+.......+..+...|+++
T Consensus        85 ~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~  161 (275)
T 1xnf_A           85 IYLTQAGNFDAAYEAFDSVLELDPT-YNYAHLNRGIALYYGGRDKLAQDDLLAFYQDD--PNDPFRSLWLYLAEQKLDEK  161 (275)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHCTT-CTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHCHH
T ss_pred             HHHHHccCHHHHHHHHHHHHhcCcc-ccHHHHHHHHHHHHhccHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHhcCHH
Confidence            9999999999999999999987533 67889999999999999999999999998864  44444444555567779999


Q ss_pred             HHHHHHHHHhhcCCCCccHHHHHHHHHHHHhcCcHHHHHHHHHHHhhCCCCC---CHHhHHHHHHHHHccCcHHHHHHHH
Q 021791          172 GAMKLYRQMKEDDLCVPNIHTYNILIGMFMALNRMDMVREIWNHVKGSELGL---DLDSYTMLIHGLCEKQKWKEACQYF  248 (307)
Q Consensus       172 ~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~a~~~~  248 (307)
                      +|...+.+.....  +++...+. ++..+...++.++|...+..........   +...+..+...|...|++++|...|
T Consensus       162 ~A~~~~~~~~~~~--~~~~~~~~-~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~  238 (275)
T 1xnf_A          162 QAKEVLKQHFEKS--DKEQWGWN-IVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALF  238 (275)
T ss_dssp             HHHHHHHHHHHHS--CCCSTHHH-HHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             HHHHHHHHHHhcC--CcchHHHH-HHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHH
Confidence            9999998887764  44544444 6777778888899999999887653211   1567888999999999999999999


Q ss_pred             HHHHHcCCCCcHhhHHHHHHHHhhchhHHHHHHHH
Q 021791          249 VEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLK  283 (307)
Q Consensus       249 ~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~  283 (307)
                      ++.++.  .|+.  +.....++...|++++|.+.+
T Consensus       239 ~~al~~--~p~~--~~~~~~~~~~l~~~~~a~~~~  269 (275)
T 1xnf_A          239 KLAVAN--NVHN--FVEHRYALLELSLLGQDQDDL  269 (275)
T ss_dssp             HHHHTT--CCTT--CHHHHHHHHHHHHHHHC----
T ss_pred             HHHHhC--Cchh--HHHHHHHHHHHHHHHhhHHHH
Confidence            999865  3533  333455778889999988776

>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3

Probab=99.74  E-value=5.8e-18  Score=136.64  Aligned_cols=223  Identities=12%  Similarity=0.132  Sum_probs=95.2

Q ss_pred             hcCchhhHHHHHHHHHhcCCCCcHHHHHHHHHHHHhhCCCCcchhhHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHH
Q 021791           16 KINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPNERFEKTIRNAEKVFDEMRVRGIEPDVTSFSIVLHVYS   95 (307)
Q Consensus        16 ~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~   95 (307)
                      +.|++++|.+.++++.      +..+|..|..++.+          .+++++|++.|.+.      +|..+|..++.++.
T Consensus        15 ~~~~ld~A~~fae~~~------~~~vWs~La~A~l~----------~g~~~eAIdsfika------~D~~~y~~V~~~ae   72 (449)
T 1b89_A           15 HIGNLDRAYEFAERCN------EPAVWSQLAKAQLQ----------KGMVKEAIDSYIKA------DDPSSYMEVVQAAN   72 (449)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HccCHHHHHHHHHhCC------ChHHHHHHHHHHHH----------cCCHHHHHHHHHcC------CCHHHHHHHHHHHH
Confidence            5688999999999982      33599999999999          88999999999653      57889999999999


Q ss_pred             hcCCchhHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHhcCCChhHHHH
Q 021791           96 RAHKPQLSLDKLNFMKEKGICPTVATYTSVVKCLCSCGRIEDAEELLGEMVRNGVSPSAETYNCFFKEYRGRKDANGAMK  175 (307)
Q Consensus        96 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~  175 (307)
                      ..|++++|+++++...+.  .+++.+.+.++.+|.+.|+++++.++++       .|+..+|..+...|...|.+++|..
T Consensus        73 ~~g~~EeAi~yl~~ark~--~~~~~i~~~Li~~Y~Klg~l~e~e~f~~-------~pn~~a~~~IGd~~~~~g~yeeA~~  143 (449)
T 1b89_A           73 TSGNWEELVKYLQMARKK--ARESYVETELIFALAKTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKL  143 (449)
T ss_dssp             --------------------------------------CHHHHTTTTT-------CC----------------CTTTHHH
T ss_pred             hCCCHHHHHHHHHHHHHh--CccchhHHHHHHHHHHhCCHHHHHHHHc-------CCcHHHHHHHHHHHHHcCCHHHHHH
Confidence            999999999988777764  4567889999999999999999988874       3677899999999999999999999


Q ss_pred             HHHHHhhcCCCCccHHHHHHHHHHHHhcCcHHHHHHHHHHHhhCCCCCCHHhHHHHHHHHHccCcHHHHHHHHHHHHHcC
Q 021791          176 LYRQMKEDDLCVPNIHTYNILIGMFMALNRMDMVREIWNHVKGSELGLDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKG  255 (307)
Q Consensus       176 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~  255 (307)
                      .|..+          ..|..++.++.+.|++++|.+.+..+      .++.+|..++.+|+..|+++.|......+    
T Consensus       144 ~Y~~a----------~n~~~LA~~L~~Lg~yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~L----  203 (449)
T 1b89_A          144 LYNNV----------SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLHI----  203 (449)
T ss_dssp             HHHHT----------TCHHHHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHHHTTTTT----
T ss_pred             HHHHh----------hhHHHHHHHHHHhccHHHHHHHHHHc------CCchhHHHHHHHHHHcCcHHHHHHHHHHH----
Confidence            99977          36899999999999999999999988      28899999999999999999996655542    


Q ss_pred             CCCcHhhHHHHHHHHhhchhHHHHHHHHHHhhhcC
Q 021791          256 LLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDEES  290 (307)
Q Consensus       256 ~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~  290 (307)
                       ...+.-...++..|.+.|.+++|..+++......
T Consensus       204 -~~~ad~l~~lv~~Yek~G~~eEai~lLe~aL~le  237 (449)
T 1b89_A          204 -VVHADELEELINYYQDRGYFEELITMLEAALGLE  237 (449)
T ss_dssp             -TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTST
T ss_pred             -HhCHhhHHHHHHHHHHCCCHHHHHHHHHHHhCCc
Confidence             2333445678899999999999999999875443

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A

Probab=99.74  E-value=4.8e-15  Score=113.89  Aligned_cols=201  Identities=11%  Similarity=0.044  Sum_probs=151.8

Q ss_pred             HHHHHHHHHHHHhhCCCCcchhhHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCchhHHHHHHHHHHcCCCCc
Q 021791           39 VVTYNVLLNGVCRRASLHPNERFEKTIRNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHKPQLSLDKLNFMKEKGICPT  118 (307)
Q Consensus        39 ~~~~~~ll~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~  118 (307)
                      ...+..+...+..          .+++++|.+.|+++.+.. +.+...+..+...+...|++++|.+.++++.+.... +
T Consensus        37 ~~~~~~~a~~~~~----------~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~-~  104 (252)
T 2ho1_A           37 RDAYIQLGLGYLQ----------RGNTEQAKVPLRKALEID-PSSADAHAALAVVFQTEMEPKLADEEYRKALASDSR-N  104 (252)
T ss_dssp             HHHHHHHHHHHHH----------TTCTGGGHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-C
T ss_pred             HHHHHHHHHHHHH----------cCChHHHHHHHHHHHhcC-CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcC-c
Confidence            4566666677777          566677777777776653 336677777888888888888888888887776432 6


Q ss_pred             hhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCC-CHhhHHHHHHHHhcCCChhHHHHHHHHHhhcCCCCccHHHHHHHH
Q 021791          119 VATYTSVVKCLCSCGRIEDAEELLGEMVRNGVSP-SAETYNCFFKEYRGRKDANGAMKLYRQMKEDDLCVPNIHTYNILI  197 (307)
Q Consensus       119 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~  197 (307)
                      ...+..+...|...|++++|...++++...+..| +...+..+...+...|++++|...+++..+..  +.+...+..+.
T Consensus       105 ~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~la  182 (252)
T 2ho1_A          105 ARVLNNYGGFLYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLN--RNQPSVALEMA  182 (252)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--SCCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--cccHHHHHHHH
Confidence            6777778888888888888888888887632233 45667777788888888888888888887765  45677788888


Q ss_pred             HHHHhcCcHHHHHHHHHHHhhCCCCCCHHhHHHHHHHHHccCcHHHHHHHHHHHHHc
Q 021791          198 GMFMALNRMDMVREIWNHVKGSELGLDLDSYTMLIHGLCEKQKWKEACQYFVEMIEK  254 (307)
Q Consensus       198 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~  254 (307)
                      ..+...|++++|...++.+.... +.+...+..+...+...|++++|...++++.+.
T Consensus       183 ~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~  238 (252)
T 2ho1_A          183 DLLYKEREYVPARQYYDLFAQGG-GQNARSLLLGIRLAKVFEDRDTAASYGLQLKRL  238 (252)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHTTS-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHcCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence            88888888888888888887754 346677778888888888888888888888775

>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}

Probab=99.74  E-value=4.7e-15  Score=111.72  Aligned_cols=206  Identities=9%  Similarity=-0.047  Sum_probs=173.5

Q ss_pred             CCHHHHHHHHHHHHhcCCchhHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHhhHHHHH
Q 021791           82 PDVTSFSIVLHVYSRAHKPQLSLDKLNFMKEKGICPTVATYTSVVKCLCSCGRIEDAEELLGEMVRNGVSPSAETYNCFF  161 (307)
Q Consensus        82 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~  161 (307)
                      .+...+..+...+...|++++|.+.++.+.+... .+...+..+...|...|++++|...++++...... +..++..+.
T Consensus         6 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~   83 (225)
T 2vq2_A            6 QVSNIKTQLAMEYMRGQDYRQATASIEDALKSDP-KNELAWLVRAEIYQYLKVNDKAQESFRQALSIKPD-SAEINNNYG   83 (225)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHH
T ss_pred             ccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCc-cchHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC-ChHHHHHHH
Confidence            3566788899999999999999999999988753 36788899999999999999999999999886533 678888999


Q ss_pred             HHHhcC-CChhHHHHHHHHHhhcCCCCccHHHHHHHHHHHHhcCcHHHHHHHHHHHhhCCCCCCHHhHHHHHHHHHccCc
Q 021791          162 KEYRGR-KDANGAMKLYRQMKEDDLCVPNIHTYNILIGMFMALNRMDMVREIWNHVKGSELGLDLDSYTMLIHGLCEKQK  240 (307)
Q Consensus       162 ~~~~~~-~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~  240 (307)
                      ..+... |++++|...++++......+.+...+..+...+...|++++|...++.+..... .+...+..+..++...|+
T Consensus        84 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~la~~~~~~~~  162 (225)
T 2vq2_A           84 WFLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQP-QFPPAFKELARTKMLAGQ  162 (225)
T ss_dssp             HHHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHHHTC
T ss_pred             HHHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCchHHHHHHHHHHHcCC
Confidence            999999 999999999999988322134577888999999999999999999999887643 367889999999999999


Q ss_pred             HHHHHHHHHHHHHcCCCCcHhhHHHHHHHHhhchhHHHHHHHHHHhhhcC
Q 021791          241 WKEACQYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDEES  290 (307)
Q Consensus       241 ~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~  290 (307)
                      +++|...++++.+.....+...+..+...+...|+.+.+..+++.+.+..
T Consensus       163 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~  212 (225)
T 2vq2_A          163 LGDADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQANF  212 (225)
T ss_dssp             HHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhC
Confidence            99999999999876321466677777888899999999999999886543

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}

Probab=99.73  E-value=2.4e-15  Score=116.96  Aligned_cols=236  Identities=9%  Similarity=0.016  Sum_probs=180.4

Q ss_pred             HHHHHHHHHHHHhcCchhhHHHHHHHHHhcCCCCcHHHHHHHHHHHHhhCCCCcchhhHHHHHHHHHHHHHHHhcCCCC-
Q 021791            4 VKMYTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPNERFEKTIRNAEKVFDEMRVRGIEP-   82 (307)
Q Consensus         4 ~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~-   82 (307)
                      ...+......+...|++++|++.|++..+.. +.+...+..+..++..          .|++++|++.+++..+.+..| 
T Consensus         3 ~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~----------~~~~~~A~~~~~~a~~~~~~~~   71 (272)
T 3u4t_A            3 DDVEFRYADFLFKNNNYAEAIEVFNKLEAKK-YNSPYIYNRRAVCYYE----------LAKYDLAQKDIETYFSKVNATK   71 (272)
T ss_dssp             --CHHHHHHHHHTTTCHHHHHHHHHHHHHTT-CCCSTTHHHHHHHHHH----------TTCHHHHHHHHHHHHTTSCTTT
T ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHH----------HhhHHHHHHHHHHHHhccCchh
Confidence            3455667788889999999999999998763 2244578888888888          788899999999988743222 


Q ss_pred             -CHHHHHHHHHHHHhcCCchhHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHhhHHHHH
Q 021791           83 -DVTSFSIVLHVYSRAHKPQLSLDKLNFMKEKGICPTVATYTSVVKCLCSCGRIEDAEELLGEMVRNGVSPSAETYNCFF  161 (307)
Q Consensus        83 -~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~  161 (307)
                       ....|..+...+...|++++|.+.++...+.... +..++..+...|...|++++|...+++..+... .+...+..+.
T Consensus        72 ~~~~~~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~-~~~~~~~~l~  149 (272)
T 3u4t_A           72 AKSADFEYYGKILMKKGQDSLAIQQYQAAVDRDTT-RLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPTT-TDPKVFYELG  149 (272)
T ss_dssp             CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSSC-CCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHccCHHHHHHHHHHHhhcCC-CcHHHHHHHH
Confidence             2334888889999999999999999998887543 667888999999999999999999998887643 3566777777


Q ss_pred             HHHhcCCChhHHHHHHHHHhhcCCCCccHHHHHHHHHHHHhcCc---HHHHHHHHHHHhhCC-CCCC------HHhHHHH
Q 021791          162 KEYRGRKDANGAMKLYRQMKEDDLCVPNIHTYNILIGMFMALNR---MDMVREIWNHVKGSE-LGLD------LDSYTML  231 (307)
Q Consensus       162 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~---~~~a~~~~~~~~~~~-~~~~------~~~~~~l  231 (307)
                      ..+...+++++|...+++..+..  +.+...+..+...+...|+   +++|...++.+.+.. -.|+      ..+|..+
T Consensus       150 ~~~~~~~~~~~A~~~~~~a~~~~--p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l  227 (272)
T 3u4t_A          150 QAYYYNKEYVKADSSFVKVLELK--PNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYI  227 (272)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHS--TTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhC--ccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHH
Confidence            34444559999999999988875  5567778888888888887   777888877766531 1122      2467778


Q ss_pred             HHHHHccCcHHHHHHHHHHHHHc
Q 021791          232 IHGLCEKQKWKEACQYFVEMIEK  254 (307)
Q Consensus       232 i~~~~~~g~~~~a~~~~~~~~~~  254 (307)
                      ...|...|++++|...|++.++.
T Consensus       228 ~~~~~~~~~~~~A~~~~~~al~~  250 (272)
T 3u4t_A          228 AYYYTINRDKVKADAAWKNILAL  250 (272)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHcCCHHHHHHHHHHHHhc
Confidence            88888899999999999998876

>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}

Probab=99.73  E-value=9.7e-15  Score=109.96  Aligned_cols=212  Identities=8%  Similarity=-0.004  Sum_probs=179.3

Q ss_pred             cHHHHHHHHHHHHhhCCCCcchhhHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCchhHHHHHHHHHHcCCCC
Q 021791           38 NVVTYNVLLNGVCRRASLHPNERFEKTIRNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHKPQLSLDKLNFMKEKGICP  117 (307)
Q Consensus        38 ~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~  117 (307)
                      +...+..+...+..          .|++++|.+.++++.+.. +.+...+..+...+...|++++|.+.++.+.+... .
T Consensus         7 ~~~~~~~~~~~~~~----------~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~-~   74 (225)
T 2vq2_A            7 VSNIKTQLAMEYMR----------GQDYRQATASIEDALKSD-PKNELAWLVRAEIYQYLKVNDKAQESFRQALSIKP-D   74 (225)
T ss_dssp             HHHHHHHHHHHHHH----------TTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-T
T ss_pred             cHHHHHHHHHHHHH----------HhhHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhCC-C
Confidence            45677888888888          788999999999998874 44688899999999999999999999999988753 3


Q ss_pred             chhhHHHHHHHHHhc-CChHHHHHHHHHHHhCCCCC-CHhhHHHHHHHHhcCCChhHHHHHHHHHhhcCCCCccHHHHHH
Q 021791          118 TVATYTSVVKCLCSC-GRIEDAEELLGEMVRNGVSP-SAETYNCFFKEYRGRKDANGAMKLYRQMKEDDLCVPNIHTYNI  195 (307)
Q Consensus       118 ~~~~~~~ll~~~~~~-~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~  195 (307)
                      +..++..+...+... |++++|...++++...+..| +...+..+...+...|++++|...+++..+..  +.+...+..
T Consensus        75 ~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~  152 (225)
T 2vq2_A           75 SAEINNNYGWFLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQ--PQFPPAFKE  152 (225)
T ss_dssp             CHHHHHHHHHHHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--TTCHHHHHH
T ss_pred             ChHHHHHHHHHHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCchHHHH
Confidence            778899999999999 99999999999998832233 36788889999999999999999999998875  566889999


Q ss_pred             HHHHHHhcCcHHHHHHHHHHHhhCCCCCCHHhHHHHHHHHHccCcHHHHHHHHHHHHHcCCCCcHhhHHH
Q 021791          196 LIGMFMALNRMDMVREIWNHVKGSELGLDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFET  265 (307)
Q Consensus       196 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~  265 (307)
                      +...+...|++++|...++.+.......+...+..+...+...|+.++|..+++.+.+.  .|+......
T Consensus       153 la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~--~p~~~~~~~  220 (225)
T 2vq2_A          153 LARTKMLAGQLGDADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQAN--FPYSEELQT  220 (225)
T ss_dssp             HHHHHHHHTCHHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHH
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHh--CCCCHHHHH
Confidence            99999999999999999999888643247778888888889999999999999998865  355444433

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1

Probab=99.71  E-value=1.3e-15  Score=116.24  Aligned_cols=202  Identities=9%  Similarity=0.048  Sum_probs=140.5

Q ss_pred             CcHHHHHHHHHHHHhhCCCCcchhhHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCchhHHHHHHHHHHcCCC
Q 021791           37 PNVVTYNVLLNGVCRRASLHPNERFEKTIRNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHKPQLSLDKLNFMKEKGIC  116 (307)
Q Consensus        37 p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~  116 (307)
                      .....|..+...+..          .|++++|...|+++.+.. +.+...+..+...+...|++++|.+.++.+.+... 
T Consensus        21 ~~~~~~~~~a~~~~~----------~~~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~-   88 (243)
T 2q7f_A           21 MASMTGGQQMGRGSE----------FGDYEKAAEAFTKAIEEN-KEDAIPYINFANLLSSVNELERALAFYDKALELDS-   88 (243)
T ss_dssp             -------------------------------CCTTHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-
T ss_pred             hHHHHHHHHHHHHHH----------hhCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-
Confidence            345566666666666          777788888888877653 34677777788888888888888888888777643 


Q ss_pred             CchhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHhcCCChhHHHHHHHHHhhcCCCCccHHHHHHH
Q 021791          117 PTVATYTSVVKCLCSCGRIEDAEELLGEMVRNGVSPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDDLCVPNIHTYNIL  196 (307)
Q Consensus       117 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l  196 (307)
                      .+..++..+...+...|++++|...++++.+.... +...+..+...+...|++++|...+++.....  +.+...+..+
T Consensus        89 ~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~l  165 (243)
T 2q7f_A           89 SAATAYYGAGNVYVVKEMYKEAKDMFEKALRAGME-NGDLFYMLGTVLVKLEQPKLALPYLQRAVELN--ENDTEARFQF  165 (243)
T ss_dssp             TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCC-SHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC--TTCHHHHHHH
T ss_pred             cchHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC--CccHHHHHHH
Confidence            36677778888888888888888888888776433 66777778888888888888888888887764  4567778888


Q ss_pred             HHHHHhcCcHHHHHHHHHHHhhCCCCCCHHhHHHHHHHHHccCcHHHHHHHHHHHHHc
Q 021791          197 IGMFMALNRMDMVREIWNHVKGSELGLDLDSYTMLIHGLCEKQKWKEACQYFVEMIEK  254 (307)
Q Consensus       197 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~  254 (307)
                      ...+...|++++|...++.+.... +.+..++..+..+|...|++++|...++++.+.
T Consensus       166 ~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~  222 (243)
T 2q7f_A          166 GMCLANEGMLDEALSQFAAVTEQD-PGHADAFYNAGVTYAYKENREKALEMLDKAIDI  222 (243)
T ss_dssp             HHHHHHHTCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHH
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHcc
Confidence            888888888888888888877663 235777888888888888888888888888775

>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...

Probab=99.71  E-value=7e-15  Score=119.36  Aligned_cols=233  Identities=10%  Similarity=0.018  Sum_probs=196.1

Q ss_pred             HHHHHHHHHHHHhhCCCCcchhhHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCC-chhHHHHHHHHHHcCCCC
Q 021791           39 VVTYNVLLNGVCRRASLHPNERFEKTIRNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHK-PQLSLDKLNFMKEKGICP  117 (307)
Q Consensus        39 ~~~~~~ll~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~-~~~a~~~~~~~~~~~~~~  117 (307)
                      ...|..+...+..          .+++++|++.+++.++.. +-+...|+.+..++...|+ +++|+..+++..+.... 
T Consensus        97 ~~a~~~lg~~~~~----------~g~~~~Al~~~~~al~l~-P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~-  164 (382)
T 2h6f_A           97 RDVYDYFRAVLQR----------DERSERAFKLTRDAIELN-AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPK-  164 (382)
T ss_dssp             HHHHHHHHHHHHH----------TCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTT-
T ss_pred             HHHHHHHHHHHHH----------CCChHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCC-
Confidence            3566777777777          677899999999999874 3478899999999999996 99999999999998654 


Q ss_pred             chhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHhcCCChhHHHHHHHHHhhcCCCCccHHHHHHHH
Q 021791          118 TVATYTSVVKCLCSCGRIEDAEELLGEMVRNGVSPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDDLCVPNIHTYNILI  197 (307)
Q Consensus       118 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~  197 (307)
                      +...|..+..++...|++++|+..|+++...... +...|..+..++...|++++|+..++++.+..  +.+...|+.+.
T Consensus       165 ~~~a~~~~g~~~~~~g~~~eAl~~~~kal~ldP~-~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~--P~~~~a~~~lg  241 (382)
T 2h6f_A          165 NYQVWHHRRVLVEWLRDPSQELEFIADILNQDAK-NYHAWQHRQWVIQEFKLWDNELQYVDQLLKED--VRNNSVWNQRY  241 (382)
T ss_dssp             CHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHC--TTCHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcc-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHhC--CCCHHHHHHHH
Confidence            7889999999999999999999999999988655 78899999999999999999999999999986  67889999999


Q ss_pred             HHHHh-cCcHHHH-----HHHHHHHhhCCCCCCHHhHHHHHHHHHccC--cHHHHHHHHHHHHHcCCCCcHhhHHHHHHH
Q 021791          198 GMFMA-LNRMDMV-----REIWNHVKGSELGLDLDSYTMLIHGLCEKQ--KWKEACQYFVEMIEKGLLPQKVTFETLYRG  269 (307)
Q Consensus       198 ~~~~~-~~~~~~a-----~~~~~~~~~~~~~~~~~~~~~li~~~~~~g--~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~  269 (307)
                      .++.. .|..++|     +..++........ +...|..+...+...|  ++++|++.+.++ + ....+...+..+...
T Consensus       242 ~~l~~l~~~~~eA~~~~el~~~~~Al~l~P~-~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~-~~p~~~~al~~La~~  318 (382)
T 2h6f_A          242 FVISNTTGYNDRAVLEREVQYTLEMIKLVPH-NESAWNYLKGILQDRGLSKYPNLLNQLLDL-Q-PSHSSPYLIAFLVDI  318 (382)
T ss_dssp             HHHHHTTCSCSHHHHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-T-TTCCCHHHHHHHHHH
T ss_pred             HHHHHhcCcchHHHHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHccCccchHHHHHHHHHh-c-cCCCCHHHHHHHHHH
Confidence            99999 6665777     4788888876433 6778999999999888  689999999988 3 234456778888888


Q ss_pred             Hhhch---------hHHHHHHHHHHh-hhc
Q 021791          270 LIQSD---------MLRTWRRLKKKL-DEE  289 (307)
Q Consensus       270 ~~~~g---------~~~~a~~~~~~~-~~~  289 (307)
                      |.+.|         ..++|.++++++ .+.
T Consensus       319 ~~~~~~~~~~~~~~~~~~A~~~~~~l~~~~  348 (382)
T 2h6f_A          319 YEDMLENQCDNKEDILNKALELCEILAKEK  348 (382)
T ss_dssp             HHHHHHTTCSSHHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHhcccccchHHHHHHHHHHHHHHHHHh
Confidence            88874         358999999998 443

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1

Probab=99.71  E-value=1.9e-15  Score=115.36  Aligned_cols=205  Identities=11%  Similarity=0.029  Sum_probs=161.7

Q ss_pred             CCCHHHHHHHHHHHHhcCCchhHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHhhHHHH
Q 021791           81 EPDVTSFSIVLHVYSRAHKPQLSLDKLNFMKEKGICPTVATYTSVVKCLCSCGRIEDAEELLGEMVRNGVSPSAETYNCF  160 (307)
Q Consensus        81 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l  160 (307)
                      ......|..+...+...|++++|...++++.+... .+...+..+...+...|++++|...++++.+.... +...+..+
T Consensus        20 ~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l   97 (243)
T 2q7f_A           20 HMASMTGGQQMGRGSEFGDYEKAAEAFTKAIEENK-EDAIPYINFANLLSSVNELERALAFYDKALELDSS-AATAYYGA   97 (243)
T ss_dssp             ----------------------CCTTHHHHHTTCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHH
T ss_pred             hhHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCc-ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCc-chHHHHHH
Confidence            34566788888899999999999999999988653 37888999999999999999999999999887543 77889999


Q ss_pred             HHHHhcCCChhHHHHHHHHHhhcCCCCccHHHHHHHHHHHHhcCcHHHHHHHHHHHhhCCCCCCHHhHHHHHHHHHccCc
Q 021791          161 FKEYRGRKDANGAMKLYRQMKEDDLCVPNIHTYNILIGMFMALNRMDMVREIWNHVKGSELGLDLDSYTMLIHGLCEKQK  240 (307)
Q Consensus       161 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~  240 (307)
                      ...+...|++++|...+++..+..  +.+...+..+...+...|++++|...++.+.... +.+...+..+...+...|+
T Consensus        98 a~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~  174 (243)
T 2q7f_A           98 GNVYVVKEMYKEAKDMFEKALRAG--MENGDLFYMLGTVLVKLEQPKLALPYLQRAVELN-ENDTEARFQFGMCLANEGM  174 (243)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHT--CCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTC
T ss_pred             HHHHHHhccHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHcCC
Confidence            999999999999999999998876  5678889999999999999999999999988764 3378889999999999999


Q ss_pred             HHHHHHHHHHHHHcCCCCcHhhHHHHHHHHhhchhHHHHHHHHHHhhhcCC
Q 021791          241 WKEACQYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDEESI  291 (307)
Q Consensus       241 ~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~  291 (307)
                      +++|...++++.+.. +.+..++..+...+...|++++|...+++..+...
T Consensus       175 ~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p  224 (243)
T 2q7f_A          175 LDEALSQFAAVTEQD-PGHADAFYNAGVTYAYKENREKALEMLDKAIDIQP  224 (243)
T ss_dssp             CHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHCT
T ss_pred             HHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHccCc
Confidence            999999999998873 34577889999999999999999999999876543

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}

Probab=99.71  E-value=3.7e-15  Score=115.81  Aligned_cols=235  Identities=10%  Similarity=-0.025  Sum_probs=190.0

Q ss_pred             HHHHHHHHHHhhCCCCcchhhHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCchhHHHHHHHHHHcCCCCc--
Q 021791           41 TYNVLLNGVCRRASLHPNERFEKTIRNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHKPQLSLDKLNFMKEKGICPT--  118 (307)
Q Consensus        41 ~~~~ll~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~--  118 (307)
                      .+......+..          .|++++|+..|++..+.. +.+...+..+..++...|++++|.+.++...+.+..++  
T Consensus         5 ~~~~~a~~~~~----------~~~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~   73 (272)
T 3u4t_A            5 VEFRYADFLFK----------NNNYAEAIEVFNKLEAKK-YNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAK   73 (272)
T ss_dssp             CHHHHHHHHHT----------TTCHHHHHHHHHHHHHTT-CCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCC
T ss_pred             HHHHHHHHHHH----------hcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHH
Confidence            34445556666          788999999999998874 33556888999999999999999999999988432222  


Q ss_pred             hhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHhcCCChhHHHHHHHHHhhcCCCCccHHHHHHHHH
Q 021791          119 VATYTSVVKCLCSCGRIEDAEELLGEMVRNGVSPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDDLCVPNIHTYNILIG  198 (307)
Q Consensus       119 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~  198 (307)
                      ..+|..+...+...|++++|...|++..+.... +..++..+...|...|++++|...+++..+..  +.+..++..+..
T Consensus        74 ~~~~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~--~~~~~~~~~l~~  150 (272)
T 3u4t_A           74 SADFEYYGKILMKKGQDSLAIQQYQAAVDRDTT-RLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPT--TTDPKVFYELGQ  150 (272)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSS--CCCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcccHHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHccCHHHHHHHHHHHhhcC--CCcHHHHHHHHH
Confidence            234889999999999999999999999987544 66889999999999999999999999999875  667788888883


Q ss_pred             HHHhcCcHHHHHHHHHHHhhCCCCCCHHhHHHHHHHHHccCc---HHHHHHHHHHHHHcC-CCCc------HhhHHHHHH
Q 021791          199 MFMALNRMDMVREIWNHVKGSELGLDLDSYTMLIHGLCEKQK---WKEACQYFVEMIEKG-LLPQ------KVTFETLYR  268 (307)
Q Consensus       199 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~---~~~a~~~~~~~~~~~-~~p~------~~~~~~l~~  268 (307)
                      .+...+++++|.+.++.+.+... .+...+..+..++...|+   +++|...+++..+.. -.|+      ..++..+..
T Consensus       151 ~~~~~~~~~~A~~~~~~a~~~~p-~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~  229 (272)
T 3u4t_A          151 AYYYNKEYVKADSSFVKVLELKP-NIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAY  229 (272)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHhCc-cchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHH
Confidence            44455699999999999988742 257778888888888888   888999999887652 1233      246778888


Q ss_pred             HHhhchhHHHHHHHHHHhhhcC
Q 021791          269 GLIQSDMLRTWRRLKKKLDEES  290 (307)
Q Consensus       269 ~~~~~g~~~~a~~~~~~~~~~~  290 (307)
                      .|...|++++|.+.+++..+..
T Consensus       230 ~~~~~~~~~~A~~~~~~al~~~  251 (272)
T 3u4t_A          230 YYTINRDKVKADAAWKNILALD  251 (272)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHC
T ss_pred             HHHHcCCHHHHHHHHHHHHhcC
Confidence            9999999999999999987654

>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1

Probab=99.71  E-value=6.5e-14  Score=108.99  Aligned_cols=225  Identities=11%  Similarity=-0.016  Sum_probs=195.3

Q ss_pred             cHHHHHHHHHHHHhhCCCCcchhhHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHh----cCCchhHHHHHHHHHHc
Q 021791           38 NVVTYNVLLNGVCRRASLHPNERFEKTIRNAEKVFDEMRVRGIEPDVTSFSIVLHVYSR----AHKPQLSLDKLNFMKEK  113 (307)
Q Consensus        38 ~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~  113 (307)
                      +..++..+-..+..          .+++++|.+.|++..+.+   +...+..+...+..    .+++++|.+.|++..+.
T Consensus         5 ~~~a~~~lg~~~~~----------~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~   71 (273)
T 1ouv_A            5 DPKELVGLGAKSYK----------EKDFTQAKKYFEKACDLK---ENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDL   71 (273)
T ss_dssp             CHHHHHHHHHHHHH----------TTCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT
T ss_pred             ChHHHHHHHHHHHh----------CCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHC
Confidence            45667777777777          778999999999998843   56788889999999    99999999999999988


Q ss_pred             CCCCchhhHHHHHHHHHh----cCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHhc----CCChhHHHHHHHHHhhcCC
Q 021791          114 GICPTVATYTSVVKCLCS----CGRIEDAEELLGEMVRNGVSPSAETYNCFFKEYRG----RKDANGAMKLYRQMKEDDL  185 (307)
Q Consensus       114 ~~~~~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~  185 (307)
                      +   +...+..+...|..    .+++++|...|++..+.+   +...+..+...|..    .+++++|...+++..+.+ 
T Consensus        72 ~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~-  144 (273)
T 1ouv_A           72 N---YSNGCHLLGNLYYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN-  144 (273)
T ss_dssp             T---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT-
T ss_pred             C---CHHHHHHHHHHHhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC-
Confidence            6   77888899999999    999999999999999874   77888899999998    999999999999999864 


Q ss_pred             CCccHHHHHHHHHHHHh----cCcHHHHHHHHHHHhhCCCCCCHHhHHHHHHHHHc----cCcHHHHHHHHHHHHHcCCC
Q 021791          186 CVPNIHTYNILIGMFMA----LNRMDMVREIWNHVKGSELGLDLDSYTMLIHGLCE----KQKWKEACQYFVEMIEKGLL  257 (307)
Q Consensus       186 ~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~a~~~~~~~~~~~~~  257 (307)
                         +...+..+...|..    .+++++|.+.++...+.+   +...+..+...|..    .+++++|...|++..+.+  
T Consensus       145 ---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~--  216 (273)
T 1ouv_A          145 ---DGDGCTILGSLYDAGRGTPKDLKKALASYDKACDLK---DSPGCFNAGNMYHHGEGATKNFKEALARYSKACELE--  216 (273)
T ss_dssp             ---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTT--
T ss_pred             ---cHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCC--
Confidence               45677888888888    999999999999998874   67788889999999    999999999999999875  


Q ss_pred             CcHhhHHHHHHHHhh----chhHHHHHHHHHHhhhcCC
Q 021791          258 PQKVTFETLYRGLIQ----SDMLRTWRRLKKKLDEESI  291 (307)
Q Consensus       258 p~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~  291 (307)
                       +...+..+...|..    .++.++|.+.+++..+.+.
T Consensus       217 -~~~a~~~l~~~~~~g~~~~~~~~~A~~~~~~a~~~~~  253 (273)
T 1ouv_A          217 -NGGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKLGA  253 (273)
T ss_dssp             -CHHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHTC
T ss_pred             -CHHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHHcCC
Confidence             25677778888888    9999999999999877664

>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1

Probab=99.70  E-value=1.5e-13  Score=106.91  Aligned_cols=228  Identities=11%  Similarity=0.019  Sum_probs=194.3

Q ss_pred             cHHHHHHHHHHHHhcCchhhHHHHHHHHHhcCCCCcHHHHHHHHHHHHhhCCCCcchhhHHHHHHHHHHHHHHHhcCCCC
Q 021791            3 NVKMYTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPNERFEKTIRNAEKVFDEMRVRGIEP   82 (307)
Q Consensus         3 ~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~   82 (307)
                      ++.++..+...+...|++++|.+.|++..+.+   +...+..+-..+.. |...     .+++++|...|++..+.+   
T Consensus         5 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~-g~~~-----~~~~~~A~~~~~~a~~~~---   72 (273)
T 1ouv_A            5 DPKELVGLGAKSYKEKDFTQAKKYFEKACDLK---ENSGCFNLGVLYYQ-GQGV-----EKNLKKAASFYAKACDLN---   72 (273)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHH-TSSS-----CCCHHHHHHHHHHHHHTT---
T ss_pred             ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHc-CCCc-----CCCHHHHHHHHHHHHHCC---
Confidence            56788889999999999999999999998832   44566666666655 1100     456799999999998876   


Q ss_pred             CHHHHHHHHHHHHh----cCCchhHHHHHHHHHHcCCCCchhhHHHHHHHHHh----cCChHHHHHHHHHHHhCCCCCCH
Q 021791           83 DVTSFSIVLHVYSR----AHKPQLSLDKLNFMKEKGICPTVATYTSVVKCLCS----CGRIEDAEELLGEMVRNGVSPSA  154 (307)
Q Consensus        83 ~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~  154 (307)
                      +...+..+...|..    .+++++|.+.|++..+.+   +...+..+...|..    .+++++|...|++..+.+   +.
T Consensus        73 ~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~  146 (273)
T 1ouv_A           73 YSNGCHLLGNLYYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN---DG  146 (273)
T ss_dssp             CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CH
T ss_pred             CHHHHHHHHHHHhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC---cH
Confidence            78888999999999    999999999999999875   77889999999999    999999999999999875   56


Q ss_pred             hhHHHHHHHHhc----CCChhHHHHHHHHHhhcCCCCccHHHHHHHHHHHHh----cCcHHHHHHHHHHHhhCCCCCCHH
Q 021791          155 ETYNCFFKEYRG----RKDANGAMKLYRQMKEDDLCVPNIHTYNILIGMFMA----LNRMDMVREIWNHVKGSELGLDLD  226 (307)
Q Consensus       155 ~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~  226 (307)
                      ..+..+...|..    .+++++|...+++..+.+    +...+..+...|..    .+++++|.+.++...+.+   +..
T Consensus       147 ~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~----~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~  219 (273)
T 1ouv_A          147 DGCTILGSLYDAGRGTPKDLKKALASYDKACDLK----DSPGCFNAGNMYHHGEGATKNFKEALARYSKACELE---NGG  219 (273)
T ss_dssp             HHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT----CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTT---CHH
T ss_pred             HHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC----CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCC---CHH
Confidence            778888888887    999999999999998764    45778888999999    999999999999998874   477


Q ss_pred             hHHHHHHHHHc----cCcHHHHHHHHHHHHHcC
Q 021791          227 SYTMLIHGLCE----KQKWKEACQYFVEMIEKG  255 (307)
Q Consensus       227 ~~~~li~~~~~----~g~~~~a~~~~~~~~~~~  255 (307)
                      .+..+...|..    .+++++|...|++..+.|
T Consensus       220 a~~~l~~~~~~g~~~~~~~~~A~~~~~~a~~~~  252 (273)
T 1ouv_A          220 GCFNLGAMQYNGEGVTRNEKQAIENFKKGCKLG  252 (273)
T ss_dssp             HHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHcCCCcccCHHHHHHHHHHHHHcC
Confidence            88888889988    999999999999999875

>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}

Probab=99.69  E-value=3.4e-14  Score=119.25  Aligned_cols=218  Identities=9%  Similarity=0.001  Sum_probs=188.6

Q ss_pred             HHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCc-hhHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCChHHHHH
Q 021791           62 EKTIRNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHKP-QLSLDKLNFMKEKGICPTVATYTSVVKCLCSCGRIEDAEE  140 (307)
Q Consensus        62 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~  140 (307)
                      .+.++++++.+++..... +.+...+..+...+...|++ ++|++.|++..+.... +...|..+..+|...|++++|..
T Consensus        81 ~~~~~~al~~l~~~~~~~-~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~g~~~~A~~  158 (474)
T 4abn_A           81 QEEMEKTLQQMEEVLGSA-QVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPE-LVEAWNQLGEVYWKKGDVTSAHT  158 (474)
T ss_dssp             HHHHHHHHHHHHHHHTTC-CCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHH
T ss_pred             HHHHHHHHHHHHHHhccC-chhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCC-CHHHHHHHHHHHHHcCCHHHHHH
Confidence            566788888888776552 44788999999999999999 9999999999887543 68899999999999999999999


Q ss_pred             HHHHHHhCCCCCCHhhHHHHHHHHhcC---------CChhHHHHHHHHHhhcCCCCccHHHHHHHHHHHHhc--------
Q 021791          141 LLGEMVRNGVSPSAETYNCFFKEYRGR---------KDANGAMKLYRQMKEDDLCVPNIHTYNILIGMFMAL--------  203 (307)
Q Consensus       141 ~~~~~~~~~~~~~~~~~~~l~~~~~~~---------~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--------  203 (307)
                      .|++..+..  |+...+..+...+...         |++++|...+++..+..  +.+...|..+..+|...        
T Consensus       159 ~~~~al~~~--p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~lg~~~~~~~~~~~~~~  234 (474)
T 4abn_A          159 CFSGALTHC--KNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMD--VLDGRSWYILGNAYLSLYFNTGQNP  234 (474)
T ss_dssp             HHHHHHTTC--CCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHHHHTTCCH
T ss_pred             HHHHHHhhC--CCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHHHHhhcccc
Confidence            999999864  6678899999999999         99999999999999886  66788999999999999        


Q ss_pred             CcHHHHHHHHHHHhhCCCC--CCHHhHHHHHHHHHccCcHHHHHHHHHHHHHcCCCCcHhhHHHHHHHHhhchhHHHHHH
Q 021791          204 NRMDMVREIWNHVKGSELG--LDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRR  281 (307)
Q Consensus       204 ~~~~~a~~~~~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~  281 (307)
                      |++++|.+.+++.......  -+...|..+..+|...|++++|...|++..+.. +-+...+..+...+...|+.++|.+
T Consensus       235 g~~~~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~a~~~l~~~~~~lg~~~eAi~  313 (474)
T 4abn_A          235 KISQQALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALD-PAWPEPQQREQQLLEFLSRLTSLLE  313 (474)
T ss_dssp             HHHHHHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             chHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999886320  378899999999999999999999999998863 3355678888899999999999987


Q ss_pred             HHHHh
Q 021791          282 LKKKL  286 (307)
Q Consensus       282 ~~~~~  286 (307)
                      .+.++
T Consensus       314 ~~~~~  318 (474)
T 4abn_A          314 SKGKT  318 (474)
T ss_dssp             HTTTC
T ss_pred             Hhccc
Confidence            66544

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1

Probab=99.69  E-value=9.8e-15  Score=113.54  Aligned_cols=222  Identities=8%  Similarity=-0.091  Sum_probs=180.8

Q ss_pred             HHHHHHHHHHHHHHHhcCC---CCCHHHHHHHHHHHHhcCCchhHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCChHHH
Q 021791           62 EKTIRNAEKVFDEMRVRGI---EPDVTSFSIVLHVYSRAHKPQLSLDKLNFMKEKGICPTVATYTSVVKCLCSCGRIEDA  138 (307)
Q Consensus        62 ~~~~~~a~~~~~~~~~~~~---~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a  138 (307)
                      .+++++|+..|+++.+...   +.+..++..+...+...|++++|...|+++.+.... +..++..+...|...|++++|
T Consensus        18 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~la~~~~~~~~~~~A   96 (275)
T 1xnf_A           18 TLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPD-MPEVFNYLGIYLTQAGNFDAA   96 (275)
T ss_dssp             CHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHTTCHHHH
T ss_pred             cchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCC-cHHHHHHHHHHHHHccCHHHH
Confidence            6899999999999988632   124678889999999999999999999999987543 788999999999999999999


Q ss_pred             HHHHHHHHhCCCCCCHhhHHHHHHHHhcCCChhHHHHHHHHHhhcCCCCccHHHHHHHHHHHHhcCcHHHHHHHHHHHhh
Q 021791          139 EELLGEMVRNGVSPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDDLCVPNIHTYNILIGMFMALNRMDMVREIWNHVKG  218 (307)
Q Consensus       139 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~  218 (307)
                      ...|+++...... +...+..+...+...|++++|...++++.+..   |+.......+..+...|++++|...++....
T Consensus        97 ~~~~~~al~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~---~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~  172 (275)
T 1xnf_A           97 YEAFDSVLELDPT-YNYAHLNRGIALYYGGRDKLAQDDLLAFYQDD---PNDPFRSLWLYLAEQKLDEKQAKEVLKQHFE  172 (275)
T ss_dssp             HHHHHHHHHHCTT-CTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---TTCHHHHHHHHHHHHHHCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhcCcc-ccHHHHHHHHHHHHhccHHHHHHHHHHHHHhC---CCChHHHHHHHHHHHhcCHHHHHHHHHHHHh
Confidence            9999999987543 67889999999999999999999999999874   4433444455556778999999999988776


Q ss_pred             CCCCCCHHhHHHHHHHHHccCcHHHHHHHHHHHHHcCCC--C-cHhhHHHHHHHHhhchhHHHHHHHHHHhhhcC
Q 021791          219 SELGLDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLL--P-QKVTFETLYRGLIQSDMLRTWRRLKKKLDEES  290 (307)
Q Consensus       219 ~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~--p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~  290 (307)
                      .. +++...+ .++..+...++.++|...+++..+....  | +..++..+...+...|++++|...+++..+..
T Consensus       173 ~~-~~~~~~~-~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~  245 (275)
T 1xnf_A          173 KS-DKEQWGW-NIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANN  245 (275)
T ss_dssp             HS-CCCSTHH-HHHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred             cC-CcchHHH-HHHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC
Confidence            53 3344444 4777788888899999999988654211  1 14678889999999999999999999987765

>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}

Probab=99.68  E-value=1.7e-15  Score=125.02  Aligned_cols=274  Identities=10%  Similarity=-0.012  Sum_probs=207.9

Q ss_pred             HHHHHHHHHHHhcCchhhHHHHHHHHHhcCCCCcH----HHHHHHHHHHHhhCCCCcchhhHHHHHHHHHHHHHHHhc--
Q 021791            5 KMYTSLIYGWCKINRIDMAERFLGEMIERGVEPNV----VTYNVLLNGVCRRASLHPNERFEKTIRNAEKVFDEMRVR--   78 (307)
Q Consensus         5 ~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~----~~~~~ll~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~--   78 (307)
                      ..+..+...+...|++++|...|++..+.+.. +.    ..+..+...+..          .|++++|...+++..+.  
T Consensus        49 ~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~~lg~~~~~----------~g~~~~A~~~~~~al~~~~  117 (411)
T 4a1s_A           49 LELALEGERLCNAGDCRAGVAFFQAAIQAGTE-DLRTLSAIYSQLGNAYFY----------LGDYNKAMQYHKHDLTLAK  117 (411)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCS-CHHHHHHHHHHHHHHHHH----------HTCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCcHHHHHHHHHHHHHhccc-ChhHHHHHHHHHHHHHHH----------CCCHHHHHHHHHHHHHHHH
Confidence            44556778889999999999999999887322 22    467788888888          77888888888877653  


Q ss_pred             --C-CCCCHHHHHHHHHHHHhcCCchhHHHHHHHHHHc----C-CCCchhhHHHHHHHHHhcCC----------------
Q 021791           79 --G-IEPDVTSFSIVLHVYSRAHKPQLSLDKLNFMKEK----G-ICPTVATYTSVVKCLCSCGR----------------  134 (307)
Q Consensus        79 --~-~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~----~-~~~~~~~~~~ll~~~~~~~~----------------  134 (307)
                        + .+.....+..+...+...|++++|...+++..+.    + ......++..+...|...|+                
T Consensus       118 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~  197 (411)
T 4a1s_A          118 SMNDRLGEAKSSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKE  197 (411)
T ss_dssp             HTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHH
T ss_pred             HccCchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhH
Confidence              1 1224567888999999999999999999887654    1 12235578889999999999                


Q ss_pred             -hHHHHHHHHHHHhC----CCC-CCHhhHHHHHHHHhcCCChhHHHHHHHHHhhcCCCCcc----HHHHHHHHHHHHhcC
Q 021791          135 -IEDAEELLGEMVRN----GVS-PSAETYNCFFKEYRGRKDANGAMKLYRQMKEDDLCVPN----IHTYNILIGMFMALN  204 (307)
Q Consensus       135 -~~~a~~~~~~~~~~----~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~  204 (307)
                       +++|...+++....    +.. ....++..+...+...|++++|...+++..+.....++    ..++..+...+...|
T Consensus       198 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g  277 (411)
T 4a1s_A          198 ALTRAVEFYQENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLG  277 (411)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTT
T ss_pred             HHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCc
Confidence             99999998887542    111 12347788889999999999999999988764210111    237888999999999


Q ss_pred             cHHHHHHHHHHHhhCCCC-----CCHHhHHHHHHHHHccCcHHHHHHHHHHHHHc----CCC-CcHhhHHHHHHHHhhch
Q 021791          205 RMDMVREIWNHVKGSELG-----LDLDSYTMLIHGLCEKQKWKEACQYFVEMIEK----GLL-PQKVTFETLYRGLIQSD  274 (307)
Q Consensus       205 ~~~~a~~~~~~~~~~~~~-----~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~----~~~-p~~~~~~~l~~~~~~~g  274 (307)
                      ++++|...+++.......     ....++..+...|...|++++|...+++.++.    +.. ....++..+...+...|
T Consensus       278 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g  357 (411)
T 4a1s_A          278 QFEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIG  357 (411)
T ss_dssp             CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTT
T ss_pred             CHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhc
Confidence            999999999887653111     11457888899999999999999999998764    111 11346788889999999


Q ss_pred             hHHHHHHHHHHhhhc
Q 021791          275 MLRTWRRLKKKLDEE  289 (307)
Q Consensus       275 ~~~~a~~~~~~~~~~  289 (307)
                      +.++|.+.+++..+.
T Consensus       358 ~~~~A~~~~~~al~~  372 (411)
T 4a1s_A          358 GHERALKYAEQHLQL  372 (411)
T ss_dssp             CHHHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHH
Confidence            999999999887543

>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}

Probab=99.65  E-value=5.2e-15  Score=118.24  Aligned_cols=276  Identities=11%  Similarity=-0.003  Sum_probs=206.3

Q ss_pred             HHHHHHHHHHHHhcCchhhHHHHHHHHHhcCCCCc----HHHHHHHHHHHHhhCCCCcchhhHHHHHHHHHHHHHHHhc-
Q 021791            4 VKMYTSLIYGWCKINRIDMAERFLGEMIERGVEPN----VVTYNVLLNGVCRRASLHPNERFEKTIRNAEKVFDEMRVR-   78 (307)
Q Consensus         4 ~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~----~~~~~~ll~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~-   78 (307)
                      ...+......+...|++++|...|+++.+.... +    ...+..+...+..          .|++++|.+.+++..+. 
T Consensus         5 ~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~~l~~~~~~----------~g~~~~A~~~~~~al~~~   73 (338)
T 3ro2_A            5 CLELALEGERLCKSGDCRAGVSFFEAAVQVGTE-DLKTLSAIYSQLGNAYFY----------LHDYAKALEYHHHDLTLA   73 (338)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCS-CHHHHHHHHHHHHHHHHH----------TTCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhccHHHHHHHHHHHHhhCcc-cHHHHHHHHHHHHHHHHH----------cCCHHHHHHHHHHHHHHh
Confidence            345566778889999999999999999887322 2    3567788888888          67788888888776543 


Q ss_pred             ---CCC-CCHHHHHHHHHHHHhcCCchhHHHHHHHHHHcCC-CCc----hhhHHHHHHHHHhcCC---------------
Q 021791           79 ---GIE-PDVTSFSIVLHVYSRAHKPQLSLDKLNFMKEKGI-CPT----VATYTSVVKCLCSCGR---------------  134 (307)
Q Consensus        79 ---~~~-~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~-~~~----~~~~~~ll~~~~~~~~---------------  134 (307)
                         +.. ....++..+...+...|++++|...+++..+... .++    ..++..+...+...|+               
T Consensus        74 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~  153 (338)
T 3ro2_A           74 RTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPE  153 (338)
T ss_dssp             HHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCH
T ss_pred             hcccccHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhh
Confidence               212 2355788889999999999999999988765411 112    3478888899999999               


Q ss_pred             -----hHHHHHHHHHHHhC----CCC-CCHhhHHHHHHHHhcCCChhHHHHHHHHHhhcCC----CCccHHHHHHHHHHH
Q 021791          135 -----IEDAEELLGEMVRN----GVS-PSAETYNCFFKEYRGRKDANGAMKLYRQMKEDDL----CVPNIHTYNILIGMF  200 (307)
Q Consensus       135 -----~~~a~~~~~~~~~~----~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~----~~~~~~~~~~l~~~~  200 (307)
                           +++|...+++....    +.. .....+..+...+...|++++|...+++..+...    ......++..+...+
T Consensus       154 ~a~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~  233 (338)
T 3ro2_A          154 DVRNALQAAVDLYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAY  233 (338)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHH
Confidence                 99999998876542    111 1234677888899999999999999998865421    011234788889999


Q ss_pred             HhcCcHHHHHHHHHHHhhCCCC-CC----HHhHHHHHHHHHccCcHHHHHHHHHHHHHc----CCCC-cHhhHHHHHHHH
Q 021791          201 MALNRMDMVREIWNHVKGSELG-LD----LDSYTMLIHGLCEKQKWKEACQYFVEMIEK----GLLP-QKVTFETLYRGL  270 (307)
Q Consensus       201 ~~~~~~~~a~~~~~~~~~~~~~-~~----~~~~~~li~~~~~~g~~~~a~~~~~~~~~~----~~~p-~~~~~~~l~~~~  270 (307)
                      ...|++++|...++........ .+    ..++..+...+...|++++|...+++..+.    +..+ ...++..+...+
T Consensus       234 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~  313 (338)
T 3ro2_A          234 IFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAY  313 (338)
T ss_dssp             HHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred             HHcCCHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHH
Confidence            9999999999999887643111 11    456788889999999999999999988764    1111 134677888999


Q ss_pred             hhchhHHHHHHHHHHhhhcC
Q 021791          271 IQSDMLRTWRRLKKKLDEES  290 (307)
Q Consensus       271 ~~~g~~~~a~~~~~~~~~~~  290 (307)
                      ...|++++|...+++..+..
T Consensus       314 ~~~g~~~~A~~~~~~a~~~~  333 (338)
T 3ro2_A          314 TALGNHDQAMHFAEKHLEIS  333 (338)
T ss_dssp             HHHTCHHHHHHHHHHHHHC-
T ss_pred             HHcCChHHHHHHHHHHHHHH
Confidence            99999999999999986654

>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A

Probab=99.65  E-value=9.6e-14  Score=101.33  Aligned_cols=167  Identities=16%  Similarity=0.086  Sum_probs=130.5

Q ss_pred             CHHHHHHHHHHHHhcCCchhHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHhhHHHHHH
Q 021791           83 DVTSFSIVLHVYSRAHKPQLSLDKLNFMKEKGICPTVATYTSVVKCLCSCGRIEDAEELLGEMVRNGVSPSAETYNCFFK  162 (307)
Q Consensus        83 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~  162 (307)
                      ++.+|..+...+...|++++|++.|++..+.... +..++..+..+|.+.|++++|...++........ +...+..+..
T Consensus         4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~~   81 (184)
T 3vtx_A            4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPN-NVETLLKLGKTYMDIGLPNDAIESLKKFVVLDTT-SAEAYYILGS   81 (184)
T ss_dssp             CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC-CHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCch-hHHHHHHHHH
Confidence            5667888888888888888888888888777543 6777888888888888888888888887776443 5667777777


Q ss_pred             HHhcCCChhHHHHHHHHHhhcCCCCccHHHHHHHHHHHHhcCcHHHHHHHHHHHhhCCCCCCHHhHHHHHHHHHccCcHH
Q 021791          163 EYRGRKDANGAMKLYRQMKEDDLCVPNIHTYNILIGMFMALNRMDMVREIWNHVKGSELGLDLDSYTMLIHGLCEKQKWK  242 (307)
Q Consensus       163 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~  242 (307)
                      .+...++++.+...+.+.....  +.+...+..+...+...|++++|++.+++..+... .+..+|..+..+|.+.|+++
T Consensus        82 ~~~~~~~~~~a~~~~~~a~~~~--~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p-~~~~~~~~lg~~~~~~g~~~  158 (184)
T 3vtx_A           82 ANFMIDEKQAAIDALQRAIALN--TVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKP-GFIRAYQSIGLAYEGKGLRD  158 (184)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHH
T ss_pred             HHHHcCCHHHHHHHHHHHHHhC--ccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcc-hhhhHHHHHHHHHHHCCCHH
Confidence            7888888888888888877765  55677788888888888888888888888777642 36777888888888888888


Q ss_pred             HHHHHHHHHHHc
Q 021791          243 EACQYFVEMIEK  254 (307)
Q Consensus       243 ~a~~~~~~~~~~  254 (307)
                      +|+..|++.++.
T Consensus       159 ~A~~~~~~al~~  170 (184)
T 3vtx_A          159 EAVKYFKKALEK  170 (184)
T ss_dssp             HHHHHHHHHHHT
T ss_pred             HHHHHHHHHHhC
Confidence            888888888764

>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7

Probab=99.65  E-value=6e-13  Score=105.42  Aligned_cols=244  Identities=9%  Similarity=-0.040  Sum_probs=187.9

Q ss_pred             cHHHHHHHHHHHHhc----Cch----hhHHHHHHHHHhcCCCCcHHHHHHHHHHHHhh-------CCCCcchhhHHHHHH
Q 021791            3 NVKMYTSLIYGWCKI----NRI----DMAERFLGEMIERGVEPNVVTYNVLLNGVCRR-------ASLHPNERFEKTIRN   67 (307)
Q Consensus         3 ~~~~~~~li~~~~~~----g~~----~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~-------~~~~~~~~~~~~~~~   67 (307)
                      +...|...+..-.+.    ++.    ++|..+|++.+... +-+...|..+...+...       |+...   ..+..++
T Consensus         7 ~~~~W~~yi~~E~~~~~~~~~~~~~~~~a~~~~~~al~~~-p~~~~~w~~~~~~~~~~~~~l~~~g~~~~---~~~~~~~   82 (308)
T 2ond_A            7 QVDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNN---AKLFSDE   82 (308)
T ss_dssp             HHHHHHHHHHHHHTCTTCCCCHHHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHHTSCCHH---HHHHHHH
T ss_pred             HHHHHHHHHHHHHhCcccCCchHHHHHHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHhchhhhhccchhh---cccchHH
Confidence            456677777766554    233    68889999998862 34667888887776542       33211   1345689


Q ss_pred             HHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCchhHHHHHHHHHHcCCCCchh-hHHHHHHHHHhcCChHHHHHHHHHHH
Q 021791           68 AEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHKPQLSLDKLNFMKEKGICPTVA-TYTSVVKCLCSCGRIEDAEELLGEMV  146 (307)
Q Consensus        68 a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~  146 (307)
                      |..+|++..+.-.+-+...|..++..+.+.|++++|.++|++..+.... +.. +|..++..+.+.|++++|..+|++..
T Consensus        83 A~~~~~rAl~~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~  161 (308)
T 2ond_A           83 AANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDI-DPTLVYIQYMKFARRAEGIKSGRMIFKKAR  161 (308)
T ss_dssp             HHHHHHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSS-CTHHHHHHHHHHHHHHHCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcccc-CccHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence            9999999987312336678999999999999999999999999986322 343 79999999999999999999999998


Q ss_pred             hCCCCCCHhhHHHHHHHH-hcCCChhHHHHHHHHHhhcCCCCccHHHHHHHHHHHHhcCcHHHHHHHHHHHhhCC-CCC-
Q 021791          147 RNGVSPSAETYNCFFKEY-RGRKDANGAMKLYRQMKEDDLCVPNIHTYNILIGMFMALNRMDMVREIWNHVKGSE-LGL-  223 (307)
Q Consensus       147 ~~~~~~~~~~~~~l~~~~-~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~-  223 (307)
                      +... ++...|....... ...|++++|..+|+...+..  +.+...|..++..+.+.|+.++|..+|++..... ..| 
T Consensus       162 ~~~p-~~~~~~~~~a~~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~  238 (308)
T 2ond_A          162 EDAR-TRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKY--GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPE  238 (308)
T ss_dssp             TSTT-CCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHH--TTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGG
T ss_pred             hcCC-CCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHH
Confidence            8653 3455555444332 23799999999999998875  5678889999999999999999999999999863 344 


Q ss_pred             -CHHhHHHHHHHHHccCcHHHHHHHHHHHHHc
Q 021791          224 -DLDSYTMLIHGLCEKQKWKEACQYFVEMIEK  254 (307)
Q Consensus       224 -~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~  254 (307)
                       ....|..++....+.|+.++|..+++++.+.
T Consensus       239 ~~~~l~~~~~~~~~~~g~~~~a~~~~~~a~~~  270 (308)
T 2ond_A          239 KSGEIWARFLAFESNIGDLASILKVEKRRFTA  270 (308)
T ss_dssp             GCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence             4667888899999999999999999999876

>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7

Probab=99.65  E-value=3e-13  Score=107.14  Aligned_cols=221  Identities=9%  Similarity=0.009  Sum_probs=178.7

Q ss_pred             HHHHHHHHHHHhcCCCCCHHHHHHHHHHHH-------hcCCc-------hhHHHHHHHHHHcCCCCchhhHHHHHHHHHh
Q 021791           66 RNAEKVFDEMRVRGIEPDVTSFSIVLHVYS-------RAHKP-------QLSLDKLNFMKEKGICPTVATYTSVVKCLCS  131 (307)
Q Consensus        66 ~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~-------~~~~~-------~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~  131 (307)
                      ++|..+|++..... +.+...|..++..+.       +.|+.       ++|..+|++..+.-.+-+...|..++..+.+
T Consensus        33 ~~a~~~~~~al~~~-p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~  111 (308)
T 2ond_A           33 KRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEES  111 (308)
T ss_dssp             HHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHHh
Confidence            67888898888763 457788888888776       35886       8999999999884122366789999999999


Q ss_pred             cCChHHHHHHHHHHHhCCCCCCHh-hHHHHHHHHhcCCChhHHHHHHHHHhhcCCCCccHHHHHHHHHHHH-hcCcHHHH
Q 021791          132 CGRIEDAEELLGEMVRNGVSPSAE-TYNCFFKEYRGRKDANGAMKLYRQMKEDDLCVPNIHTYNILIGMFM-ALNRMDMV  209 (307)
Q Consensus       132 ~~~~~~a~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~a  209 (307)
                      .|++++|..+|++..+.... +.. .|..+...+.+.|++++|..+|++..+..  +++...|........ ..|+.++|
T Consensus       112 ~~~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~--p~~~~~~~~~a~~~~~~~~~~~~A  188 (308)
T 2ond_A          112 RMKYEKVHSIYNRLLAIEDI-DPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA--RTRHHVYVTAALMEYYCSKDKSVA  188 (308)
T ss_dssp             TTCHHHHHHHHHHHHTSSSS-CTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTST--TCCTHHHHHHHHHHHHTSCCHHHH
T ss_pred             cCCHHHHHHHHHHHHhcccc-CccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC--CCCHHHHHHHHHHHHHHcCCHHHH
Confidence            99999999999999985332 333 89999999999999999999999999875  455556654444432 36999999


Q ss_pred             HHHHHHHhhCCCCCCHHhHHHHHHHHHccCcHHHHHHHHHHHHHcC-CCCc--HhhHHHHHHHHhhchhHHHHHHHHHHh
Q 021791          210 REIWNHVKGSELGLDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKG-LLPQ--KVTFETLYRGLIQSDMLRTWRRLKKKL  286 (307)
Q Consensus       210 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~-~~p~--~~~~~~l~~~~~~~g~~~~a~~~~~~~  286 (307)
                      .++|+...+... -+...|..++..+.+.|++++|..+|++.++.. +.|+  ...|..++....+.|+.+.|..++++.
T Consensus       189 ~~~~~~al~~~p-~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a  267 (308)
T 2ond_A          189 FKIFELGLKKYG-DIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRR  267 (308)
T ss_dssp             HHHHHHHHHHHT-TCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHH
T ss_pred             HHHHHHHHHhCC-CcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            999999987643 378889999999999999999999999999863 4553  457888888899999999999999998


Q ss_pred             hhcCC
Q 021791          287 DEESI  291 (307)
Q Consensus       287 ~~~~~  291 (307)
                      .+...
T Consensus       268 ~~~~p  272 (308)
T 2ond_A          268 FTAFR  272 (308)
T ss_dssp             HHHTT
T ss_pred             HHHcc
Confidence            76544

>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}

Probab=99.65  E-value=6.5e-15  Score=121.04  Aligned_cols=275  Identities=11%  Similarity=-0.004  Sum_probs=207.6

Q ss_pred             cHHHHHHHHHHHHhcCchhhHHHHHHHHHhcCCCCc----HHHHHHHHHHHHhhCCCCcchhhHHHHHHHHHHHHHHHhc
Q 021791            3 NVKMYTSLIYGWCKINRIDMAERFLGEMIERGVEPN----VVTYNVLLNGVCRRASLHPNERFEKTIRNAEKVFDEMRVR   78 (307)
Q Consensus         3 ~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~----~~~~~~ll~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~   78 (307)
                      ....+......+...|++++|...|++..+.+.. +    ...+..+...+..          .|++++|...+++....
T Consensus         8 ~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~~l~~~~~~----------~g~~~~A~~~~~~al~~   76 (406)
T 3sf4_A            8 SCLELALEGERLCKSGDCRAGVSFFEAAVQVGTE-DLKTLSAIYSQLGNAYFY----------LHDYAKALEYHHHDLTL   76 (406)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCS-CHHHHHHHHHHHHHHHHH----------TTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHHHHH----------hcCHHHHHHHHHHHHHH
Confidence            3456677888999999999999999999887322 2    3567778888888          77788888888876543


Q ss_pred             ----CCCC-CHHHHHHHHHHHHhcCCchhHHHHHHHHHHcCC-----CCchhhHHHHHHHHHhcCC--------------
Q 021791           79 ----GIEP-DVTSFSIVLHVYSRAHKPQLSLDKLNFMKEKGI-----CPTVATYTSVVKCLCSCGR--------------  134 (307)
Q Consensus        79 ----~~~~-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~-----~~~~~~~~~ll~~~~~~~~--------------  134 (307)
                          +..| ...++..+...+...|++++|...+++..+...     .....++..+...|...|+              
T Consensus        77 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~  156 (406)
T 3sf4_A           77 ARTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFP  156 (406)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCC
T ss_pred             HHhccccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhh
Confidence                2122 255788889999999999999999988765411     1114478888999999999              


Q ss_pred             ------hHHHHHHHHHHHhC----CCCC-CHhhHHHHHHHHhcCCChhHHHHHHHHHhhcCCCCc----cHHHHHHHHHH
Q 021791          135 ------IEDAEELLGEMVRN----GVSP-SAETYNCFFKEYRGRKDANGAMKLYRQMKEDDLCVP----NIHTYNILIGM  199 (307)
Q Consensus       135 ------~~~a~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~~l~~~  199 (307)
                            +++|...+++....    +..+ ...++..+...+...|++++|...+++........+    ...++..+...
T Consensus       157 ~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~  236 (406)
T 3sf4_A          157 EEVRDALQAAVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNA  236 (406)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHH
Confidence                  99999999876542    1111 234678888999999999999999998875421011    23478889999


Q ss_pred             HHhcCcHHHHHHHHHHHhhCCCC-CC----HHhHHHHHHHHHccCcHHHHHHHHHHHHHc----CCCC-cHhhHHHHHHH
Q 021791          200 FMALNRMDMVREIWNHVKGSELG-LD----LDSYTMLIHGLCEKQKWKEACQYFVEMIEK----GLLP-QKVTFETLYRG  269 (307)
Q Consensus       200 ~~~~~~~~~a~~~~~~~~~~~~~-~~----~~~~~~li~~~~~~g~~~~a~~~~~~~~~~----~~~p-~~~~~~~l~~~  269 (307)
                      +...|++++|...++........ .+    ..++..+...|...|++++|...+++..+.    +..+ ...++..+...
T Consensus       237 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~  316 (406)
T 3sf4_A          237 YIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNA  316 (406)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHcCChHHHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHH
Confidence            99999999999999887643111 11    457888899999999999999999998764    1111 14567888889


Q ss_pred             HhhchhHHHHHHHHHHhhh
Q 021791          270 LIQSDMLRTWRRLKKKLDE  288 (307)
Q Consensus       270 ~~~~g~~~~a~~~~~~~~~  288 (307)
                      +...|++++|.+.+++..+
T Consensus       317 ~~~~g~~~~A~~~~~~al~  335 (406)
T 3sf4_A          317 YTALGNHDQAMHFAEKHLE  335 (406)
T ss_dssp             HHHHTCHHHHHHHHHHHHH
T ss_pred             HHHcCCHHHHHHHHHHHHH
Confidence            9999999999999988654

>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}

Probab=99.63  E-value=6.2e-12  Score=106.17  Aligned_cols=208  Identities=12%  Similarity=0.056  Sum_probs=117.7

Q ss_pred             HHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHh----cCCchhHHHHHHHHHHcCCCCchhhHHHHHHHHHh----cCCh
Q 021791           64 TIRNAEKVFDEMRVRGIEPDVTSFSIVLHVYSR----AHKPQLSLDKLNFMKEKGICPTVATYTSVVKCLCS----CGRI  135 (307)
Q Consensus        64 ~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~----~~~~  135 (307)
                      +.++|.++|++..+.|   +...+..+...|..    .+++++|.++|+...+.|   +...+..+...|..    .++.
T Consensus       202 ~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~~~~~d~  275 (490)
T 2xm6_A          202 NDAISAQWYRKSATSG---DELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQG---NSIAQFRLGYILEQGLAGAKEP  275 (490)
T ss_dssp             CHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHTTTSSCCH
T ss_pred             CHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHCCCCCCCCH
Confidence            3444555555444433   33344444444443    445555555555554442   33344444444544    5566


Q ss_pred             HHHHHHHHHHHhCCCCCCHhhHHHHHHHHhcC-----CChhHHHHHHHHHhhcCCCCccHHHHHHHHHHHHhcC---cHH
Q 021791          136 EDAEELLGEMVRNGVSPSAETYNCFFKEYRGR-----KDANGAMKLYRQMKEDDLCVPNIHTYNILIGMFMALN---RMD  207 (307)
Q Consensus       136 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-----~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~---~~~  207 (307)
                      ++|...|++..+.|   +...+..+...|...     +++++|...+++..+.+    +...+..+...|...|   +.+
T Consensus       276 ~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~~----~~~a~~~lg~~y~~~g~~~~~~  348 (490)
T 2xm6_A          276 LKALEWYRKSAEQG---NSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQG----DATAQANLGAIYFRLGSEEEHK  348 (490)
T ss_dssp             HHHHHHHHHHHTTT---CHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHTT----CHHHHHHHHHHHHHSCCHHHHH
T ss_pred             HHHHHHHHHHHHcC---CHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhcC----CHHHHHHHHHHHHhCCCcccHH
Confidence            66666666555432   334445555555554     56666666666665543    2344555555555544   566


Q ss_pred             HHHHHHHHHhhCCCCCCHHhHHHHHHHHHc----cCcHHHHHHHHHHHHHcCCCCcHhhHHHHHHHHhh----chhHHHH
Q 021791          208 MVREIWNHVKGSELGLDLDSYTMLIHGLCE----KQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQ----SDMLRTW  279 (307)
Q Consensus       208 ~a~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~a  279 (307)
                      +|.+.++...+.+   +...+..+...|..    .+++++|...|++..+.|   ++..+..+...|..    .++.++|
T Consensus       349 ~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A  422 (490)
T 2xm6_A          349 KAVEWFRKAAAKG---EKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQG---LSAAQVQLGEIYYYGLGVERDYVQA  422 (490)
T ss_dssp             HHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHH
T ss_pred             HHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCC---CHHHHHHHHHHHHcCCCCCCCHHHH
Confidence            6777776666653   55666666666666    677777777777777654   34556666666665    6777777


Q ss_pred             HHHHHHhhhcC
Q 021791          280 RRLKKKLDEES  290 (307)
Q Consensus       280 ~~~~~~~~~~~  290 (307)
                      ...+++..+.+
T Consensus       423 ~~~~~~A~~~~  433 (490)
T 2xm6_A          423 WAWFDTASTND  433 (490)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHCC
Confidence            77777766554

>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}

Probab=99.62  E-value=1.3e-11  Score=104.19  Aligned_cols=175  Identities=12%  Similarity=0.034  Sum_probs=74.7

Q ss_pred             HHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHh----cCCchhHHHHHHHHHHcCCCCchhhHHHHHHHHHh----cCCh
Q 021791           64 TIRNAEKVFDEMRVRGIEPDVTSFSIVLHVYSR----AHKPQLSLDKLNFMKEKGICPTVATYTSVVKCLCS----CGRI  135 (307)
Q Consensus        64 ~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~----~~~~  135 (307)
                      ++++|.+.|++..+.|   +...+..|...|..    .++.++|.+.|++..+.|   +...+..+...|..    .++.
T Consensus       130 ~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~  203 (490)
T 2xm6_A          130 DKAESVKWFRLAAEQG---RDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQG---NVWSCNQLGYMYSRGLGVERND  203 (490)
T ss_dssp             CHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCH
T ss_pred             CHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHhcCCCCCcCH
Confidence            3445555555544443   33344444444443    444555555555444432   33444444444444    4455


Q ss_pred             HHHHHHHHHHHhCCCCCCHhhHHHHHHHHhc----CCChhHHHHHHHHHhhcCCCCccHHHHHHHHHHHHh----cCcHH
Q 021791          136 EDAEELLGEMVRNGVSPSAETYNCFFKEYRG----RKDANGAMKLYRQMKEDDLCVPNIHTYNILIGMFMA----LNRMD  207 (307)
Q Consensus       136 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~  207 (307)
                      ++|...|++..+.+   +...+..+...|..    .+++++|...|++..+.+    +...+..+...|..    .++.+
T Consensus       204 ~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~----~~~a~~~lg~~y~~g~~~~~d~~  276 (490)
T 2xm6_A          204 AISAQWYRKSATSG---DELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQG----NSIAQFRLGYILEQGLAGAKEPL  276 (490)
T ss_dssp             HHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTTT----CHHHHHHHHHHHHHTTTSSCCHH
T ss_pred             HHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC----CHHHHHHHHHHHHCCCCCCCCHH
Confidence            55555555444432   23333334433332    344444444444444332    12233333333333    44444


Q ss_pred             HHHHHHHHHhhCCCCCCHHhHHHHHHHHHcc-----CcHHHHHHHHHHHHHc
Q 021791          208 MVREIWNHVKGSELGLDLDSYTMLIHGLCEK-----QKWKEACQYFVEMIEK  254 (307)
Q Consensus       208 ~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~-----g~~~~a~~~~~~~~~~  254 (307)
                      +|.+.++...+.+   +...+..+...|...     +++++|...|++..+.
T Consensus       277 ~A~~~~~~a~~~~---~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~  325 (490)
T 2xm6_A          277 KALEWYRKSAEQG---NSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQ  325 (490)
T ss_dssp             HHHHHHHHHHTTT---CHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHcC---CHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhc
Confidence            4444444444332   233333333333333     4444444444444433

>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A

Probab=99.62  E-value=2.5e-13  Score=99.11  Aligned_cols=168  Identities=13%  Similarity=0.068  Sum_probs=149.6

Q ss_pred             chhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHhcCCChhHHHHHHHHHhhcCCCCccHHHHHHHH
Q 021791          118 TVATYTSVVKCLCSCGRIEDAEELLGEMVRNGVSPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDDLCVPNIHTYNILI  197 (307)
Q Consensus       118 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~  197 (307)
                      +..+|..+...|...|++++|+..|++..+..+. +..++..+..+|.+.|++++|...+.......  +.+...+..+.
T Consensus         4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~~   80 (184)
T 3vtx_A            4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPN-NVETLLKLGKTYMDIGLPNDAIESLKKFVVLD--TTSAEAYYILG   80 (184)
T ss_dssp             CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--chhHHHHHHHH
Confidence            6778999999999999999999999999987654 78899999999999999999999999998876  56778888889


Q ss_pred             HHHHhcCcHHHHHHHHHHHhhCCCCCCHHhHHHHHHHHHccCcHHHHHHHHHHHHHcCCCCcHhhHHHHHHHHhhchhHH
Q 021791          198 GMFMALNRMDMVREIWNHVKGSELGLDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQSDMLR  277 (307)
Q Consensus       198 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~  277 (307)
                      ..+...++++.+...+........ .+...+..+..+|...|++++|+..|++.++.. +.+..++..+..++.+.|+++
T Consensus        81 ~~~~~~~~~~~a~~~~~~a~~~~~-~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~lg~~~~~~g~~~  158 (184)
T 3vtx_A           81 SANFMIDEKQAAIDALQRAIALNT-VYADAYYKLGLVYDSMGEHDKAIEAYEKTISIK-PGFIRAYQSIGLAYEGKGLRD  158 (184)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHH
T ss_pred             HHHHHcCCHHHHHHHHHHHHHhCc-cchHHHHHHHHHHHHhCCchhHHHHHHHHHHhc-chhhhHHHHHHHHHHHCCCHH
Confidence            999999999999999999887643 378889999999999999999999999999873 346778999999999999999


Q ss_pred             HHHHHHHHhhhcC
Q 021791          278 TWRRLKKKLDEES  290 (307)
Q Consensus       278 ~a~~~~~~~~~~~  290 (307)
                      +|.+.+++..+..
T Consensus       159 ~A~~~~~~al~~~  171 (184)
T 3vtx_A          159 EAVKYFKKALEKE  171 (184)
T ss_dssp             HHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHhCC
Confidence            9999999986643

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}

Probab=99.62  E-value=7.9e-13  Score=111.02  Aligned_cols=201  Identities=10%  Similarity=-0.037  Sum_probs=101.7

Q ss_pred             HHHHHHHHHHHHhcCchhhHHHHHHHHHhc--------CCCCcHHHHHHHHHHHHhhCCCCcchhhHHHHHHHHHHHHHH
Q 021791            4 VKMYTSLIYGWCKINRIDMAERFLGEMIER--------GVEPNVVTYNVLLNGVCRRASLHPNERFEKTIRNAEKVFDEM   75 (307)
Q Consensus         4 ~~~~~~li~~~~~~g~~~~a~~~~~~~~~~--------~~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~a~~~~~~~   75 (307)
                      +..||.+...+...|++++|++.|++..+.        ..+....+|+.+..+|..          .|++++|...+++.
T Consensus        51 a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~----------~g~~~~A~~~~~ka  120 (472)
T 4g1t_A           51 ATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYH----------MGRLSDVQIYVDKV  120 (472)
T ss_dssp             CHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHH----------TTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHH----------cCChHHHHHHHHHH
Confidence            467999999999999999999999987542        122245688889888988          45555555555544


Q ss_pred             Hhc-----C--CCCCHHHHHHHHHHHHhc--CCchhHHHHHHHHHHcCCCCchhhHHHHHHH---HHhcCChHHHHHHHH
Q 021791           76 RVR-----G--IEPDVTSFSIVLHVYSRA--HKPQLSLDKLNFMKEKGICPTVATYTSVVKC---LCSCGRIEDAEELLG  143 (307)
Q Consensus        76 ~~~-----~--~~~~~~~~~~ll~~~~~~--~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~---~~~~~~~~~a~~~~~  143 (307)
                      .+.     +  ......++.....++...  +++++|++.|++..+.... +...+..+..+   +...++.++|++.++
T Consensus       121 ~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~-~~~~~~~~~~~~~~l~~~~~~~~al~~~~  199 (472)
T 4g1t_A          121 KHVCEKFSSPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPK-NPEFTSGLAIASYRLDNWPPSQNAIDPLR  199 (472)
T ss_dssp             HHHHHHSCCSSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHHHSCCCCCTHHHHH
T ss_pred             HHHhHhcccccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcCchHHHHHHHHHH
Confidence            321     0  011233444443333332  3455666666665554322 23333333322   223344445555555


Q ss_pred             HHHhCCCCCCHhhHHHHHHHHh----cCCChhHHHHHHHHHhhcCCCCccHHHHHHHHHHHHhcCcHHHHHHHHHHHhh
Q 021791          144 EMVRNGVSPSAETYNCFFKEYR----GRKDANGAMKLYRQMKEDDLCVPNIHTYNILIGMFMALNRMDMVREIWNHVKG  218 (307)
Q Consensus       144 ~~~~~~~~~~~~~~~~l~~~~~----~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~  218 (307)
                      +..+.+.. +..++..+...+.    ..++.++|...+++.....  +.+..++..+...+...|++++|...+++..+
T Consensus       200 ~al~l~p~-~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~--~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~  275 (472)
T 4g1t_A          200 QAIRLNPD-NQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKA--PGVTDVLRSAAKFYRRKDEPDKAIELLKKALE  275 (472)
T ss_dssp             HHHHHCSS-CHHHHHHHHHHHHHCC------CHHHHHHHHHHHHC--SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHhhcCCc-chHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhC--ccHHHHHHHHHHHHHHcCchHHHHHHHHHHHH
Confidence            54443221 2333333222222    2234445555555444443  33444445555555555555555555544443

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}

Probab=99.59  E-value=7.4e-12  Score=105.10  Aligned_cols=272  Identities=11%  Similarity=-0.000  Sum_probs=197.1

Q ss_pred             HHHHHHHHHHHHhcCchhhHHHHHHHHHhc-----C-CCC-cHHHHHHHHHHHHhhCCCCcchhhHHHHHHHHHHHHHHH
Q 021791            4 VKMYTSLIYGWCKINRIDMAERFLGEMIER-----G-VEP-NVVTYNVLLNGVCRRASLHPNERFEKTIRNAEKVFDEMR   76 (307)
Q Consensus         4 ~~~~~~li~~~~~~g~~~~a~~~~~~~~~~-----~-~~p-~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~   76 (307)
                      ..+|+.+...|...|++++|...+++..+.     + ..+ ...++.....++...|        .+++++|+..|++..
T Consensus        94 ~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~--------~~~y~~A~~~~~kal  165 (472)
T 4g1t_A           94 LVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSPYRIESPELDCEEGWTRLKCG--------GNQNERAKVCFEKAL  165 (472)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCSSCCCCHHHHHHHHHHHHHHC--------TTHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcccccchhhHHHHHHHHHHHHHHc--------cccHHHHHHHHHHHH
Confidence            568999999999999999999999987642     1 111 3456666655666544        568999999999998


Q ss_pred             hcCCCCCHHHHHHHHHH---HHhcCCchhHHHHHHHHHHcCCCCchhhHHHHHHHHHh----cCChHHHHHHHHHHHhCC
Q 021791           77 VRGIEPDVTSFSIVLHV---YSRAHKPQLSLDKLNFMKEKGICPTVATYTSVVKCLCS----CGRIEDAEELLGEMVRNG  149 (307)
Q Consensus        77 ~~~~~~~~~~~~~ll~~---~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~  149 (307)
                      +.. +-+...+..+..+   +...++.++|++.+++..+.... +..++..+...+..    .++.++|...+++.....
T Consensus       166 ~~~-p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~p~-~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~  243 (472)
T 4g1t_A          166 EKK-PKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLNPD-NQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKA  243 (472)
T ss_dssp             HHS-TTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHCSS-CHHHHHHHHHHHHHCC------CHHHHHHHHHHHHC
T ss_pred             HhC-CCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcCCc-chHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhC
Confidence            874 2245555555544   34567888999999998877533 56666666655554    457789999999988765


Q ss_pred             CCCCHhhHHHHHHHHhcCCChhHHHHHHHHHhhcCCCCccHHHHHHHHHHHHhc-------------------CcHHHHH
Q 021791          150 VSPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDDLCVPNIHTYNILIGMFMAL-------------------NRMDMVR  210 (307)
Q Consensus       150 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-------------------~~~~~a~  210 (307)
                      .. +..++..+...|...|++++|...+.+..+..  +.+..++..+...|...                   +..+.|.
T Consensus       244 ~~-~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~lg~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~  320 (472)
T 4g1t_A          244 PG-VTDVLRSAAKFYRRKDEPDKAIELLKKALEYI--PNNAYLHCQIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAV  320 (472)
T ss_dssp             SS-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--TTCHHHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHH
T ss_pred             cc-HHHHHHHHHHHHHHcCchHHHHHHHHHHHHhC--CChHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHH
Confidence            43 67888999999999999999999999998875  55677777776665432                   3456788


Q ss_pred             HHHHHHhhCCCCCCHHhHHHHHHHHHccCcHHHHHHHHHHHHHcCCCCcHh--hHHHHHH-HHhhchhHHHHHHHHHHhh
Q 021791          211 EIWNHVKGSELGLDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKV--TFETLYR-GLIQSDMLRTWRRLKKKLD  287 (307)
Q Consensus       211 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~--~~~~l~~-~~~~~g~~~~a~~~~~~~~  287 (307)
                      ..++...... +.+..++..+...|...|++++|...|++.++....|...  .+..+.. .....|+.++|...+++..
T Consensus       321 ~~~~~a~~~~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal  399 (472)
T 4g1t_A          321 AHLKKADEAN-DNLFRVCSILASLHALADQYEEAEYYFQKEFSKELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGV  399 (472)
T ss_dssp             HHHHHHHHHC-TTTCCCHHHHHHHHHHTTCHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHH
T ss_pred             HHHHHHhhcC-CchhhhhhhHHHHHHHhccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence            8888877654 2356678889999999999999999999999875443322  2233322 2456789999999988765


Q ss_pred             hc
Q 021791          288 EE  289 (307)
Q Consensus       288 ~~  289 (307)
                      +.
T Consensus       400 ~i  401 (472)
T 4g1t_A          400 KI  401 (472)
T ss_dssp             HS
T ss_pred             hc
Confidence            53

>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}

Probab=99.59  E-value=1.9e-14  Score=113.92  Aligned_cols=170  Identities=12%  Similarity=0.108  Sum_probs=128.4

Q ss_pred             cHHHHHHHHHHHHhcCchhhHHHHHHHHHhc-------CCCCcHHHHHHHHHHHHhhCCCCcchhhHHHHHHHHHHHHHH
Q 021791            3 NVKMYTSLIYGWCKINRIDMAERFLGEMIER-------GVEPNVVTYNVLLNGVCRRASLHPNERFEKTIRNAEKVFDEM   75 (307)
Q Consensus         3 ~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~-------~~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~a~~~~~~~   75 (307)
                      +..++..+...+...|++++|..+|+++.+.       ..+.....+..+...+..          .|++++|...+++.
T Consensus        26 ~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~----------~g~~~~A~~~~~~a   95 (311)
T 3nf1_A           26 RLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRD----------QNKYKDAANLLNDA   95 (311)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHH----------TTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHH----------CCCHHHHHHHHHHH
Confidence            4678899999999999999999999998873       223345678888888888          67788888888777


Q ss_pred             Hhc------C-CCCCHHHHHHHHHHHHhcCCchhHHHHHHHHHHc------CC-CCchhhHHHHHHHHHhcCChHHHHHH
Q 021791           76 RVR------G-IEPDVTSFSIVLHVYSRAHKPQLSLDKLNFMKEK------GI-CPTVATYTSVVKCLCSCGRIEDAEEL  141 (307)
Q Consensus        76 ~~~------~-~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~------~~-~~~~~~~~~ll~~~~~~~~~~~a~~~  141 (307)
                      .+.      + .+....++..+...+...|++++|...+++..+.      +. +....++..+...+...|++++|...
T Consensus        96 l~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~  175 (311)
T 3nf1_A           96 LAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYY  175 (311)
T ss_dssp             HHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHH
T ss_pred             HHHHHHHhCCCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence            654      2 2234567888889999999999999999888764      21 22355677788888889999999988


Q ss_pred             HHHHHhC------CCCC-CHhhHHHHHHHHhcCCChhHHHHHHHHHhh
Q 021791          142 LGEMVRN------GVSP-SAETYNCFFKEYRGRKDANGAMKLYRQMKE  182 (307)
Q Consensus       142 ~~~~~~~------~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~  182 (307)
                      +++....      +..| ...++..+...|...|++++|...+++...
T Consensus       176 ~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~  223 (311)
T 3nf1_A          176 YQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILT  223 (311)
T ss_dssp             HHHHHHHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            8887764      1122 234677777788888888888888887765

>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}

Probab=99.58  E-value=1e-13  Score=109.64  Aligned_cols=206  Identities=12%  Similarity=0.056  Sum_probs=147.0

Q ss_pred             CHHHHHHHHHHHHhcCCchhHHHHHHHHHHc-------CCCCchhhHHHHHHHHHhcCChHHHHHHHHHHHhC------C
Q 021791           83 DVTSFSIVLHVYSRAHKPQLSLDKLNFMKEK-------GICPTVATYTSVVKCLCSCGRIEDAEELLGEMVRN------G  149 (307)
Q Consensus        83 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-------~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~------~  149 (307)
                      +..++..+...+...|++++|..+++++.+.       .......++..+...|...|++++|...+++....      +
T Consensus        26 ~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~  105 (311)
T 3nf1_A           26 RLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGK  105 (311)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCT
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCC
Confidence            4566777888888888888888888877663       22334566777888888888888888888877653      1


Q ss_pred             C-CCCHhhHHHHHHHHhcCCChhHHHHHHHHHhhc------CCCCccHHHHHHHHHHHHhcCcHHHHHHHHHHHhhC---
Q 021791          150 V-SPSAETYNCFFKEYRGRKDANGAMKLYRQMKED------DLCVPNIHTYNILIGMFMALNRMDMVREIWNHVKGS---  219 (307)
Q Consensus       150 ~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~------~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---  219 (307)
                      . .....++..+...|...|++++|...+++....      +..+....++..+...+...|++++|.+.++.+...   
T Consensus       106 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~  185 (311)
T 3nf1_A          106 DHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQT  185 (311)
T ss_dssp             TCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHH
T ss_pred             CChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence            1 223456777778888888888888888877654      211234556777788888888888888888777653   


Q ss_pred             ---CCCC-CHHhHHHHHHHHHccCcHHHHHHHHHHHHHc-----------------------------------------
Q 021791          220 ---ELGL-DLDSYTMLIHGLCEKQKWKEACQYFVEMIEK-----------------------------------------  254 (307)
Q Consensus       220 ---~~~~-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~-----------------------------------------  254 (307)
                         +..| ...++..+..+|...|++++|...++++.+.                                         
T Consensus       186 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~  265 (311)
T 3nf1_A          186 KLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWMHAEEREECKGKQKDGTSFGEYGG  265 (311)
T ss_dssp             TSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------CCHHHHHHHHHHC-------CCSCCCC-
T ss_pred             HhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhcCchhhHHHHHHHHH
Confidence               1122 2345777778888888888888888887752                                         


Q ss_pred             -------CCCCcHhhHHHHHHHHhhchhHHHHHHHHHHhhh
Q 021791          255 -------GLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDE  288 (307)
Q Consensus       255 -------~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~  288 (307)
                             ....+..++..+..+|...|++++|.+++++..+
T Consensus       266 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~  306 (311)
T 3nf1_A          266 WYKACKVDSPTVTTTLKNLGALYRRQGKFEAAETLEEAAMR  306 (311)
T ss_dssp             --------CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred             HHhhcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence                   1122345688889999999999999999998754

>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}

Probab=99.58  E-value=7.3e-14  Score=117.23  Aligned_cols=214  Identities=9%  Similarity=-0.028  Sum_probs=180.4

Q ss_pred             hhhHHHHHHHHHhcCCCCcHHHHHHHHHHHHhhCCCCcchhhHHHH-HHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcC
Q 021791           20 IDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPNERFEKTI-RNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAH   98 (307)
Q Consensus        20 ~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~   98 (307)
                      ++++.+.+++.... .+.+...+..+-.++..          .+++ ++|++.|++..+.. +.+...|..+..+|...|
T Consensus        84 ~~~al~~l~~~~~~-~~~~a~~~~~lg~~~~~----------~g~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g  151 (474)
T 4abn_A           84 MEKTLQQMEEVLGS-AQVEAQALMLKGKALNV----------TPDYSPEAEVLLSKAVKLE-PELVEAWNQLGEVYWKKG  151 (474)
T ss_dssp             HHHHHHHHHHHHTT-CCCCHHHHHHHHHHHTS----------SSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHhcc-CchhHHHHHHHHHHHHh----------ccccHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcC
Confidence            45566666655443 23367788888888888          7788 99999999998874 346889999999999999


Q ss_pred             CchhHHHHHHHHHHcCCCCchhhHHHHHHHHHhc---------CChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHhcC--
Q 021791           99 KPQLSLDKLNFMKEKGICPTVATYTSVVKCLCSC---------GRIEDAEELLGEMVRNGVSPSAETYNCFFKEYRGR--  167 (307)
Q Consensus        99 ~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~---------~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--  167 (307)
                      ++++|.+.|++..+..  |+...+..+...|...         |++++|...+++..+.... +...|..+..+|...  
T Consensus       152 ~~~~A~~~~~~al~~~--p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~~~  228 (474)
T 4abn_A          152 DVTSAHTCFSGALTHC--KNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVL-DGRSWYILGNAYLSLYF  228 (474)
T ss_dssp             CHHHHHHHHHHHHTTC--CCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHhhC--CCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHH
Confidence            9999999999999874  6678899999999999         9999999999999987544 688899999999888  


Q ss_pred             ------CChhHHHHHHHHHhhcCCCC---ccHHHHHHHHHHHHhcCcHHHHHHHHHHHhhCCCCCCHHhHHHHHHHHHcc
Q 021791          168 ------KDANGAMKLYRQMKEDDLCV---PNIHTYNILIGMFMALNRMDMVREIWNHVKGSELGLDLDSYTMLIHGLCEK  238 (307)
Q Consensus       168 ------~~~~~a~~~~~~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~  238 (307)
                            |++++|...|++..+..  +   .+...|..+..+|...|++++|.+.|++....... +...+..+..++...
T Consensus       229 ~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~-~~~a~~~l~~~~~~l  305 (474)
T 4abn_A          229 NTGQNPKISQQALSAYAQAEKVD--RKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDPA-WPEPQQREQQLLEFL  305 (474)
T ss_dssp             HTTCCHHHHHHHHHHHHHHHHHC--GGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHH
T ss_pred             hhccccchHHHHHHHHHHHHHhC--CCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHH
Confidence                  99999999999999874  4   58899999999999999999999999999887433 677888899999999


Q ss_pred             CcHHHHHHHHHHH
Q 021791          239 QKWKEACQYFVEM  251 (307)
Q Consensus       239 g~~~~a~~~~~~~  251 (307)
                      |++++|+..+.++
T Consensus       306 g~~~eAi~~~~~~  318 (474)
T 4abn_A          306 SRLTSLLESKGKT  318 (474)
T ss_dssp             HHHHHHHHHTTTC
T ss_pred             HHHHHHHHHhccc
Confidence            9999998866543

>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7

Probab=99.57  E-value=1.8e-11  Score=104.37  Aligned_cols=217  Identities=10%  Similarity=0.052  Sum_probs=151.5

Q ss_pred             HHHHHHHHHHhcCCCCCHHHHHHHHHHHHh-------cCCch-------hHHHHHHHHHHcCCCCchhhHHHHHHHHHhc
Q 021791           67 NAEKVFDEMRVRGIEPDVTSFSIVLHVYSR-------AHKPQ-------LSLDKLNFMKEKGICPTVATYTSVVKCLCSC  132 (307)
Q Consensus        67 ~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~-------~~~~~-------~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~  132 (307)
                      ++..+|++.... .+-+...|..++..+.+       .|+++       +|..+|++..+.-.+.+...|..++..+.+.
T Consensus       256 ~a~~~y~~al~~-~p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~  334 (530)
T 2ooe_A          256 RVMFAYEQCLLV-LGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESR  334 (530)
T ss_dssp             HHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHh-CCCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhc
Confidence            444556666554 23356677777777665       68876       7888888887632233577788888888888


Q ss_pred             CChHHHHHHHHHHHhCCCCCC-HhhHHHHHHHHhcCCChhHHHHHHHHHhhcCCCCccHHHHHHHHHH-HHhcCcHHHHH
Q 021791          133 GRIEDAEELLGEMVRNGVSPS-AETYNCFFKEYRGRKDANGAMKLYRQMKEDDLCVPNIHTYNILIGM-FMALNRMDMVR  210 (307)
Q Consensus       133 ~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~a~  210 (307)
                      |++++|..+|+++.+.... + ...|..++..+.+.|+.++|..+|++..+..  +.+...+...... +...|+.++|.
T Consensus       335 g~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~--~~~~~~~~~~a~~~~~~~~~~~~A~  411 (530)
T 2ooe_A          335 MKYEKVHSIYNRLLAIEDI-DPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA--RTRHHVYVTAALMEYYCSKDKSVAF  411 (530)
T ss_dssp             TCHHHHHHHHHHHHHSSSS-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCT--TCCTHHHHHHHHHHHHHTCCHHHHH
T ss_pred             CCHHHHHHHHHHHhCcccc-CchHHHHHHHHHHHHhcCHHHHHHHHHHHHhcc--CCchHHHHHHHHHHHHHcCChhHHH
Confidence            8888888888888875322 2 2478888888888888888888888888764  2333333332222 33578888888


Q ss_pred             HHHHHHhhCCCCCCHHhHHHHHHHHHccCcHHHHHHHHHHHHHcC-CCCc--HhhHHHHHHHHhhchhHHHHHHHHHHhh
Q 021791          211 EIWNHVKGSELGLDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKG-LLPQ--KVTFETLYRGLIQSDMLRTWRRLKKKLD  287 (307)
Q Consensus       211 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~-~~p~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~  287 (307)
                      ++|+...+.. +-+...|..++..+.+.|+.++|..+|++.+..+ ..|+  ...|...+......|+.+.+..+.+++.
T Consensus       412 ~~~e~al~~~-p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~~~~~lw~~~~~~e~~~G~~~~~~~~~~r~~  490 (530)
T 2ooe_A          412 KIFELGLKKY-GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRF  490 (530)
T ss_dssp             HHHHHHHHHH-TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGGGCHHHHHHHHHHHHHSSCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHC-CCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            8888877653 2267788888888888888888888888888763 2232  2367677777777888888888887765


Q ss_pred             h
Q 021791          288 E  288 (307)
Q Consensus       288 ~  288 (307)
                      +
T Consensus       491 ~  491 (530)
T 2ooe_A          491 T  491 (530)
T ss_dssp             H
T ss_pred             H
Confidence            4

>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7

Probab=99.56  E-value=1.9e-11  Score=104.25  Aligned_cols=269  Identities=12%  Similarity=0.131  Sum_probs=174.2

Q ss_pred             cHHHHHHHHHHHHhcCchhhHHHHHHHHHhcCCCCcHHHHHHHHHHHHhhCCCCcchhhHHHHHHHHHHHHHHHhcCCCC
Q 021791            3 NVKMYTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPNERFEKTIRNAEKVFDEMRVRGIEP   82 (307)
Q Consensus         3 ~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~   82 (307)
                      |+..|..++. +.+.|++++|..+|+++.+. .+-+...|..++..+.+          .+++++|..+|+++...  .|
T Consensus        12 ~~~~w~~l~~-~~~~~~~~~a~~~~e~al~~-~P~~~~~w~~~~~~~~~----------~~~~~~a~~~~~ral~~--~p   77 (530)
T 2ooe_A           12 DLDAWSILIR-EAQNQPIDKARKTYERLVAQ-FPSSGRFWKLYIEAEIK----------AKNYDKVEKLFQRCLMK--VL   77 (530)
T ss_dssp             CHHHHHHHHH-HHHSSCHHHHHHHHHHHHTT-CTTCHHHHHHHHHHHHH----------TTCHHHHHHHHHHHTTT--CC
T ss_pred             CHHHHHHHHH-HHHhCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHh----------cCCHHHHHHHHHHHHhc--CC
Confidence            6778888888 47789999999999999876 34466788888888888          77888999999998876  46


Q ss_pred             CHHHHHHHHHHH-HhcCCchhHHH----HHHHHHHc-CCCC-chhhHHHHHHHHHh---------cCChHHHHHHHHHHH
Q 021791           83 DVTSFSIVLHVY-SRAHKPQLSLD----KLNFMKEK-GICP-TVATYTSVVKCLCS---------CGRIEDAEELLGEMV  146 (307)
Q Consensus        83 ~~~~~~~ll~~~-~~~~~~~~a~~----~~~~~~~~-~~~~-~~~~~~~ll~~~~~---------~~~~~~a~~~~~~~~  146 (307)
                      +...|..++... ...|+.+.|.+    +|+..... |..| +...|...+....+         .|+++.|..+|++..
T Consensus        78 ~~~lw~~~~~~~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al  157 (530)
T 2ooe_A           78 HIDLWKCYLSYVRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGC  157 (530)
T ss_dssp             CHHHHHHHHHHHHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHT
T ss_pred             ChHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHH
Confidence            777777776533 34566666654    55555433 4333 44556666655443         567777777777766


Q ss_pred             hCCCCCCHhhHHHH-----------------------------------------------------------------H
Q 021791          147 RNGVSPSAETYNCF-----------------------------------------------------------------F  161 (307)
Q Consensus       147 ~~~~~~~~~~~~~l-----------------------------------------------------------------~  161 (307)
                      .....+....|...                                                                 +
T Consensus       158 ~~P~~~~~~~~~~~~~~e~~~~~~~~~~~l~~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~w~~~~  237 (530)
T 2ooe_A          158 VNPMINIEQLWRDYNKYEEGINIHLAKKMIEDRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQEAQQVDMWKKYI  237 (530)
T ss_dssp             TSCCTTHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--CCHHHHHHHHHHHH
T ss_pred             hchhhhHHHHHHHHHHHHHhhchhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhccccccCCCCCChhHHHHHHHHHHHH
Confidence            52111111222111                                                                 1


Q ss_pred             HHHhc----CCCh----hHHHHHHHHHhhcCCCCccHHHHHHHHHHHHh-------cCcHH-------HHHHHHHHHhhC
Q 021791          162 KEYRG----RKDA----NGAMKLYRQMKEDDLCVPNIHTYNILIGMFMA-------LNRMD-------MVREIWNHVKGS  219 (307)
Q Consensus       162 ~~~~~----~~~~----~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-------~~~~~-------~a~~~~~~~~~~  219 (307)
                      .....    .++.    .++..+|++.....  +.+...|..++..+.+       .|+++       +|..++++....
T Consensus       238 ~~e~~~~~~~~~~~~~~~~a~~~y~~al~~~--p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~  315 (530)
T 2ooe_A          238 QWEKSNPLRTEDQTLITKRVMFAYEQCLLVL--GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAIST  315 (530)
T ss_dssp             HHHHHCSSCCSCSHHHHHHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTT
T ss_pred             HHHHcCCccCCcchhHHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHH
Confidence            10000    0111    13444555555443  4456666666666664       67776       788888888752


Q ss_pred             CCCCCHHhHHHHHHHHHccCcHHHHHHHHHHHHHcCCCCcH--hhHHHHHHHHhhchhHHHHHHHHHHhhhc
Q 021791          220 ELGLDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQK--VTFETLYRGLIQSDMLRTWRRLKKKLDEE  289 (307)
Q Consensus       220 ~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~--~~~~~l~~~~~~~g~~~~a~~~~~~~~~~  289 (307)
                      -.+-+...|..++..+.+.|++++|..+|+++++.  .|+.  ..|..++..+.+.|+.++|+.++++..+.
T Consensus       316 ~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~  385 (530)
T 2ooe_A          316 LLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAI--EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKARED  385 (530)
T ss_dssp             TCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHS--SSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred             hCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhCc--cccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhc
Confidence            12335777888888888888888888888888874  4432  46777777777888888888888887654

>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2

Probab=99.55  E-value=1.2e-11  Score=100.71  Aligned_cols=272  Identities=10%  Similarity=-0.041  Sum_probs=191.8

Q ss_pred             HHHHHHHHHhcCchhhHHHHHHHHHhcCCCCcHH----HHHHHHHHHHhhCCCCcchhhHHHHHHHHHHHHHHHhcCC-C
Q 021791            7 YTSLIYGWCKINRIDMAERFLGEMIERGVEPNVV----TYNVLLNGVCRRASLHPNERFEKTIRNAEKVFDEMRVRGI-E   81 (307)
Q Consensus         7 ~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~----~~~~ll~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~-~   81 (307)
                      .......+...|++++|...+++........+..    .++.+...+..          .|++++|...+++...... .
T Consensus        17 ~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~----------~g~~~~A~~~~~~al~~~~~~   86 (373)
T 1hz4_A           17 NALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHC----------KGELTRSLALMQQTEQMARQH   86 (373)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHH----------HTCHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHh----------cCcHHHHHHHHHHHHHHHHhc
Confidence            3445556778999999999999988763222222    44555566666          7788888888888765310 1


Q ss_pred             CC----HHHHHHHHHHHHhcCCchhHHHHHHHHHHc----CCC--C-chhhHHHHHHHHHhcCChHHHHHHHHHHHhCCC
Q 021791           82 PD----VTSFSIVLHVYSRAHKPQLSLDKLNFMKEK----GIC--P-TVATYTSVVKCLCSCGRIEDAEELLGEMVRNGV  150 (307)
Q Consensus        82 ~~----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~----~~~--~-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~  150 (307)
                      ++    ..++..+...+...|++++|...+++..+.    +..  | ....+..+...+...|++++|...+++......
T Consensus        87 ~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~  166 (373)
T 1hz4_A           87 DVWHYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLS  166 (373)
T ss_dssp             TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTT
T ss_pred             CcHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhh
Confidence            12    234667788899999999999999887653    221  2 244567788889999999999999999876432


Q ss_pred             CC----CHhhHHHHHHHHhcCCChhHHHHHHHHHhhcCCCCcc-HHHHH----HHHHHHHhcCcHHHHHHHHHHHhhCCC
Q 021791          151 SP----SAETYNCFFKEYRGRKDANGAMKLYRQMKEDDLCVPN-IHTYN----ILIGMFMALNRMDMVREIWNHVKGSEL  221 (307)
Q Consensus       151 ~~----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~----~l~~~~~~~~~~~~a~~~~~~~~~~~~  221 (307)
                      ..    ...++..+...+...|++++|...+++.........+ .....    ..+..+...|++++|...++.......
T Consensus       167 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~  246 (373)
T 1hz4_A          167 SYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEF  246 (373)
T ss_dssp             TSCGGGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCC
T ss_pred             ccCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCC
Confidence            21    2346777888899999999999999988754210111 11111    233457789999999999999876532


Q ss_pred             CCC---HHhHHHHHHHHHccCcHHHHHHHHHHHHHc----CCCCcH-hhHHHHHHHHhhchhHHHHHHHHHHhhh
Q 021791          222 GLD---LDSYTMLIHGLCEKQKWKEACQYFVEMIEK----GLLPQK-VTFETLYRGLIQSDMLRTWRRLKKKLDE  288 (307)
Q Consensus       222 ~~~---~~~~~~li~~~~~~g~~~~a~~~~~~~~~~----~~~p~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~  288 (307)
                      .++   ...+..+...+...|++++|...+++....    |..++. .++..+..++...|+.++|...+++...
T Consensus       247 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al~  321 (373)
T 1hz4_A          247 ANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALK  321 (373)
T ss_dssp             TTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred             CcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence            211   234667788899999999999999988654    222233 2566677888999999999999887644

>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}

Probab=99.54  E-value=1.5e-12  Score=106.31  Aligned_cols=226  Identities=10%  Similarity=0.022  Sum_probs=171.8

Q ss_pred             HHHHHHHHHHHHHHHhc----CCCC-CHHHHHHHHHHHHhcCCchhHHHHHHHHHHcC--C----CCchhhHHHHHHHHH
Q 021791           62 EKTIRNAEKVFDEMRVR----GIEP-DVTSFSIVLHVYSRAHKPQLSLDKLNFMKEKG--I----CPTVATYTSVVKCLC  130 (307)
Q Consensus        62 ~~~~~~a~~~~~~~~~~----~~~~-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~--~----~~~~~~~~~ll~~~~  130 (307)
                      .|++++|...|++..+.    +-.+ ...++..+...+...|+++.|...+.+..+..  .    .....+++.+...|.
T Consensus       116 ~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~  195 (383)
T 3ulq_A          116 QREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHSLFATNFL  195 (383)
T ss_dssp             TTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHHHHHHHHH
T ss_pred             hcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHHHHHHHHH
Confidence            78899999999998764    1111 34678899999999999999999998886541  1    112457888999999


Q ss_pred             hcCChHHHHHHHHHHHhCCCC-CC----HhhHHHHHHHHhcCCChhHHHHHHHHHhh-----cCCCCccHHHHHHHHHHH
Q 021791          131 SCGRIEDAEELLGEMVRNGVS-PS----AETYNCFFKEYRGRKDANGAMKLYRQMKE-----DDLCVPNIHTYNILIGMF  200 (307)
Q Consensus       131 ~~~~~~~a~~~~~~~~~~~~~-~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-----~~~~~~~~~~~~~l~~~~  200 (307)
                      ..|++++|...+++..+.... ++    ..++..+...|...|++++|...+++...     ... +....++..+...+
T Consensus       196 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~-~~~~~~~~~l~~~~  274 (383)
T 3ulq_A          196 DLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNIL-PSLPQAYFLITQIH  274 (383)
T ss_dssp             HTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCG-GGHHHHHHHHHHHH
T ss_pred             HhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccc-hhHHHHHHHHHHHH
Confidence            999999999999988753111 11    24788899999999999999999999877     321 33467789999999


Q ss_pred             HhcCcHHHHHHHHHHHhhC----CCCCCHHhHHHHHHHHHccCc---HHHHHHHHHHHHHcCCCCc-HhhHHHHHHHHhh
Q 021791          201 MALNRMDMVREIWNHVKGS----ELGLDLDSYTMLIHGLCEKQK---WKEACQYFVEMIEKGLLPQ-KVTFETLYRGLIQ  272 (307)
Q Consensus       201 ~~~~~~~~a~~~~~~~~~~----~~~~~~~~~~~li~~~~~~g~---~~~a~~~~~~~~~~~~~p~-~~~~~~l~~~~~~  272 (307)
                      ...|++++|...+++....    +.+.....+..+...+...|+   +++|+.++++.   +..|+ ...+..+...|..
T Consensus       275 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~---~~~~~~~~~~~~la~~y~~  351 (383)
T 3ulq_A          275 YKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESK---MLYADLEDFAIDVAKYYHE  351 (383)
T ss_dssp             HHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHHHHH
T ss_pred             HHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHC---cCHHHHHHHHHHHHHHHHH
Confidence            9999999999999887653    111122335677788888998   77777777765   33333 3467778899999


Q ss_pred             chhHHHHHHHHHHhhhcCC
Q 021791          273 SDMLRTWRRLKKKLDEESI  291 (307)
Q Consensus       273 ~g~~~~a~~~~~~~~~~~~  291 (307)
                      .|++++|...+++..+..-
T Consensus       352 ~g~~~~A~~~~~~al~~~~  370 (383)
T 3ulq_A          352 RKNFQKASAYFLKVEQVRQ  370 (383)
T ss_dssp             TTCHHHHHHHHHHHHHHHT
T ss_pred             CCCHHHHHHHHHHHHHHHH
Confidence            9999999999998865443

>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A

Probab=99.53  E-value=1.9e-12  Score=94.19  Aligned_cols=163  Identities=13%  Similarity=0.047  Sum_probs=84.2

Q ss_pred             HHHHHHHHHHhcCCchhHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHh
Q 021791           86 SFSIVLHVYSRAHKPQLSLDKLNFMKEKGICPTVATYTSVVKCLCSCGRIEDAEELLGEMVRNGVSPSAETYNCFFKEYR  165 (307)
Q Consensus        86 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~  165 (307)
                      .+..+...+...|++++|.+.++.+.+... .+..++..+...+...|++++|...++++.+... .+...+..+...+.
T Consensus        10 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~a~~~~   87 (186)
T 3as5_A           10 YYRDKGISHAKAGRYSQAVMLLEQVYDADA-FDVDVALHLGIAYVKTGAVDRGTELLERSLADAP-DNVKVATVLGLTYV   87 (186)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHTTTCCTTS-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhcCHHHHHHHHHHHHHhCc-cChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHH
Confidence            344455555555666666665555544322 2444555555555555555555555555554422 24445555555555


Q ss_pred             cCCChhHHHHHHHHHhhcCCCCccHHHHHHHHHHHHhcCcHHHHHHHHHHHhhCCCCCCHHhHHHHHHHHHccCcHHHHH
Q 021791          166 GRKDANGAMKLYRQMKEDDLCVPNIHTYNILIGMFMALNRMDMVREIWNHVKGSELGLDLDSYTMLIHGLCEKQKWKEAC  245 (307)
Q Consensus       166 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~  245 (307)
                      ..|++++|...+++.....  +.+...+..+...+...|++++|...++.+.... +.+...+..+...+...|++++|.
T Consensus        88 ~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~  164 (186)
T 3as5_A           88 QVQKYDLAVPLLIKVAEAN--PINFNVRFRLGVALDNLGRFDEAIDSFKIALGLR-PNEGKVHRAIAFSYEQMGRHEEAL  164 (186)
T ss_dssp             HHTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred             HhcCHHHHHHHHHHHHhcC--cHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCHHHHH
Confidence            5555555555555555443  3344455555555555555555555555554432 123444555555555555555555


Q ss_pred             HHHHHHHH
Q 021791          246 QYFVEMIE  253 (307)
Q Consensus       246 ~~~~~~~~  253 (307)
                      ..+++..+
T Consensus       165 ~~~~~~~~  172 (186)
T 3as5_A          165 PHFKKANE  172 (186)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            55555443

>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A

Probab=99.52  E-value=2.2e-12  Score=93.75  Aligned_cols=167  Identities=13%  Similarity=0.069  Sum_probs=146.1

Q ss_pred             hhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHhcCCChhHHHHHHHHHhhcCCCCccHHHHHHHHH
Q 021791          119 VATYTSVVKCLCSCGRIEDAEELLGEMVRNGVSPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDDLCVPNIHTYNILIG  198 (307)
Q Consensus       119 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~  198 (307)
                      ...+..+...+...|++++|...++++..... .+...+..+...+...|++++|...+++.....  +.+...+..+..
T Consensus         8 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~a~   84 (186)
T 3as5_A            8 QVYYRDKGISHAKAGRYSQAVMLLEQVYDADA-FDVDVALHLGIAYVKTGAVDRGTELLERSLADA--PDNVKVATVLGL   84 (186)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHTTTCCTTS-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCc-cChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CCCHHHHHHHHH
Confidence            45677788899999999999999999887643 367888999999999999999999999998875  567888999999


Q ss_pred             HHHhcCcHHHHHHHHHHHhhCCCCCCHHhHHHHHHHHHccCcHHHHHHHHHHHHHcCCCCcHhhHHHHHHHHhhchhHHH
Q 021791          199 MFMALNRMDMVREIWNHVKGSELGLDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRT  278 (307)
Q Consensus       199 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~  278 (307)
                      .+...|++++|.+.++.+.... +.+...+..+...+...|++++|...++++.+.. +.+...+..+...+...|++++
T Consensus        85 ~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~  162 (186)
T 3as5_A           85 TYVQVQKYDLAVPLLIKVAEAN-PINFNVRFRLGVALDNLGRFDEAIDSFKIALGLR-PNEGKVHRAIAFSYEQMGRHEE  162 (186)
T ss_dssp             HHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHH
T ss_pred             HHHHhcCHHHHHHHHHHHHhcC-cHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCHHH
Confidence            9999999999999999988764 3477889999999999999999999999998874 4467788999999999999999


Q ss_pred             HHHHHHHhhhcC
Q 021791          279 WRRLKKKLDEES  290 (307)
Q Consensus       279 a~~~~~~~~~~~  290 (307)
                      |...+++..+..
T Consensus       163 A~~~~~~~~~~~  174 (186)
T 3as5_A          163 ALPHFKKANELD  174 (186)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcC
Confidence            999999986654

>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*

Probab=99.51  E-value=1.6e-12  Score=113.75  Aligned_cols=166  Identities=13%  Similarity=0.111  Sum_probs=149.8

Q ss_pred             CHHHHHHHHHHHHhcCCchhHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHhhHHHHHH
Q 021791           83 DVTSFSIVLHVYSRAHKPQLSLDKLNFMKEKGICPTVATYTSVVKCLCSCGRIEDAEELLGEMVRNGVSPSAETYNCFFK  162 (307)
Q Consensus        83 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~  162 (307)
                      +...++.|...+.+.|++++|++.|++..+.... +..++..+..+|.+.|++++|+..|++..+.... +...|..+..
T Consensus         8 ~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~-~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P~-~~~a~~nLg~   85 (723)
T 4gyw_A            8 HADSLNNLANIKREQGNIEEAVRLYRKALEVFPE-FAAAHSNLASVLQQQGKLQEALMHYKEAIRISPT-FADAYSNMGN   85 (723)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHH
Confidence            5678999999999999999999999999988543 6889999999999999999999999999987544 6889999999


Q ss_pred             HHhcCCChhHHHHHHHHHhhcCCCCccHHHHHHHHHHHHhcCcHHHHHHHHHHHhhCCCCCCHHhHHHHHHHHHccCcHH
Q 021791          163 EYRGRKDANGAMKLYRQMKEDDLCVPNIHTYNILIGMFMALNRMDMVREIWNHVKGSELGLDLDSYTMLIHGLCEKQKWK  242 (307)
Q Consensus       163 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~  242 (307)
                      ++...|++++|...|++..+..  +.+...+..+..++...|++++|++.+++..+.... +...+..+..++...|+++
T Consensus        86 ~l~~~g~~~~A~~~~~kAl~l~--P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~-~~~a~~~L~~~l~~~g~~~  162 (723)
T 4gyw_A           86 TLKEMQDVQGALQCYTRAIQIN--PAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPD-FPDAYCNLAHCLQIVCDWT  162 (723)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSC-CHHHHHHHHHHHHHTTCCT
T ss_pred             HHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-ChHHHhhhhhHHHhcccHH
Confidence            9999999999999999999876  667889999999999999999999999999987533 6788999999999999999


Q ss_pred             HHHHHHHHHHH
Q 021791          243 EACQYFVEMIE  253 (307)
Q Consensus       243 ~a~~~~~~~~~  253 (307)
                      +|.+.++++++
T Consensus       163 ~A~~~~~kal~  173 (723)
T 4gyw_A          163 DYDERMKKLVS  173 (723)
T ss_dssp             THHHHHHHHHH
T ss_pred             HHHHHHHHHHH
Confidence            99999988765

>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}

Probab=99.51  E-value=3.3e-13  Score=110.82  Aligned_cols=263  Identities=11%  Similarity=-0.014  Sum_probs=193.2

Q ss_pred             HHHHHHHHHHHHhcCchhhHHHHHHHHHhc----CCCC-cHHHHHHHHHHHHhhCCCCcchhhHHHHHHHHHHHHHHHhc
Q 021791            4 VKMYTSLIYGWCKINRIDMAERFLGEMIER----GVEP-NVVTYNVLLNGVCRRASLHPNERFEKTIRNAEKVFDEMRVR   78 (307)
Q Consensus         4 ~~~~~~li~~~~~~g~~~~a~~~~~~~~~~----~~~p-~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~   78 (307)
                      ..+|..+...+...|++++|...|++....    +..| ...++..+...+..          .|++++|...+++..+.
T Consensus        47 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~----------~g~~~~A~~~~~~al~~  116 (406)
T 3sf4_A           47 SAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNLGNTLKV----------LGNFDEAIVCCQRHLDI  116 (406)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH----------TTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHH----------cCCHHHHHHHHHHHHHH
Confidence            357888999999999999999999987543    2222 24567777778887          67788888888777653


Q ss_pred             C----C-CCCHHHHHHHHHHHHhcCC--------------------chhHHHHHHHHHHc----CC-CCchhhHHHHHHH
Q 021791           79 G----I-EPDVTSFSIVLHVYSRAHK--------------------PQLSLDKLNFMKEK----GI-CPTVATYTSVVKC  128 (307)
Q Consensus        79 ~----~-~~~~~~~~~ll~~~~~~~~--------------------~~~a~~~~~~~~~~----~~-~~~~~~~~~ll~~  128 (307)
                      .    - .....++..+...+...|+                    +++|.+.++...+.    +. .....++..+...
T Consensus       117 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~  196 (406)
T 3sf4_A          117 SRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAVDFYEENLSLVTALGDRAAQGRAFGNLGNT  196 (406)
T ss_dssp             HHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHH
Confidence            1    1 1124478888999999999                    99999998876543    11 1124568888999


Q ss_pred             HHhcCChHHHHHHHHHHHhCCCC-CC----HhhHHHHHHHHhcCCChhHHHHHHHHHhhcCCCCc----cHHHHHHHHHH
Q 021791          129 LCSCGRIEDAEELLGEMVRNGVS-PS----AETYNCFFKEYRGRKDANGAMKLYRQMKEDDLCVP----NIHTYNILIGM  199 (307)
Q Consensus       129 ~~~~~~~~~a~~~~~~~~~~~~~-~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~~l~~~  199 (307)
                      |...|++++|...+++....... ++    ..++..+...+...|++++|...+++........+    ...++..+...
T Consensus       197 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~  276 (406)
T 3sf4_A          197 HYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNT  276 (406)
T ss_dssp             HHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCcCchHHHHHHHHHHHH
Confidence            99999999999999988753111 12    23788888999999999999999998865421011    15678889999


Q ss_pred             HHhcCcHHHHHHHHHHHhhCCCC-CC----HHhHHHHHHHHHccCcHHHHHHHHHHHHHc----CCCC-cHhhHHHHHHH
Q 021791          200 FMALNRMDMVREIWNHVKGSELG-LD----LDSYTMLIHGLCEKQKWKEACQYFVEMIEK----GLLP-QKVTFETLYRG  269 (307)
Q Consensus       200 ~~~~~~~~~a~~~~~~~~~~~~~-~~----~~~~~~li~~~~~~g~~~~a~~~~~~~~~~----~~~p-~~~~~~~l~~~  269 (307)
                      +...|++++|...++........ .+    ..++..+...|...|++++|...+++..+.    +..+ ...++..+...
T Consensus       277 ~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~  356 (406)
T 3sf4_A          277 YTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISREVGDKSGELTARLNLSDL  356 (406)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHH
Confidence            99999999999999887653111 12    457888889999999999999999988654    2111 23456667777


Q ss_pred             HhhchhH
Q 021791          270 LIQSDML  276 (307)
Q Consensus       270 ~~~~g~~  276 (307)
                      +...|+.
T Consensus       357 ~~~~g~~  363 (406)
T 3sf4_A          357 QMVLGLS  363 (406)
T ss_dssp             HHHHHTT
T ss_pred             HHHhhHh
Confidence            7777754

>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}

Probab=99.51  E-value=9.6e-12  Score=101.59  Aligned_cols=263  Identities=9%  Similarity=-0.020  Sum_probs=183.8

Q ss_pred             HHhcCchhhHHHHHHHHHhc--CCCC--cHHHHHHHHHHHHhhCCCCcchhhHHHHHHHH-----------HHHHHHHhc
Q 021791           14 WCKINRIDMAERFLGEMIER--GVEP--NVVTYNVLLNGVCRRASLHPNERFEKTIRNAE-----------KVFDEMRVR   78 (307)
Q Consensus        14 ~~~~g~~~~a~~~~~~~~~~--~~~p--~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~a~-----------~~~~~~~~~   78 (307)
                      +.+.+++++|..+++++.+.  ..+.  +...|-.++..-...-        .+.++.+.           +.++.+...
T Consensus        22 ~i~~~~~~~A~~l~~~i~~~~~~~~~~~~~~~y~~ll~~r~~~~--------~~~~~~~~~~~~e~~~~~~~~~~~i~~~   93 (383)
T 3ulq_A           22 YIRRFSIPDAEYLRREIKQELDQMEEDQDLHLYYSLMEFRHNLM--------LEYLEPLEKMRIEEQPRLSDLLLEIDKK   93 (383)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHH--------HHHHGGGGGSCGGGSCCHHHHHHHHHHH
T ss_pred             HHHHcCHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHH--------HhhcCcccccccccccchhhHHHHHHhc
Confidence            45689999999999998765  3323  3344444443222100        34444444           666665443


Q ss_pred             CCCCCHHH------HHHHHHHHHhcCCchhHHHHHHHHHHc----CCCC-chhhHHHHHHHHHhcCChHHHHHHHHHHHh
Q 021791           79 GIEPDVTS------FSIVLHVYSRAHKPQLSLDKLNFMKEK----GICP-TVATYTSVVKCLCSCGRIEDAEELLGEMVR  147 (307)
Q Consensus        79 ~~~~~~~~------~~~ll~~~~~~~~~~~a~~~~~~~~~~----~~~~-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~  147 (307)
                        +++...      +......+...|++++|...+++..+.    +-.+ ...++..+...|...|++++|...+++..+
T Consensus        94 --~~~~~~~l~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~  171 (383)
T 3ulq_A           94 --QARLTGLLEYYFNFFRGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYE  171 (383)
T ss_dssp             --THHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             --CCCchhHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence              112222      223566778899999999999998764    2111 346788999999999999999999998875


Q ss_pred             CCCC-C-----CHhhHHHHHHHHhcCCChhHHHHHHHHHhhcCCC----CccHHHHHHHHHHHHhcCcHHHHHHHHHHHh
Q 021791          148 NGVS-P-----SAETYNCFFKEYRGRKDANGAMKLYRQMKEDDLC----VPNIHTYNILIGMFMALNRMDMVREIWNHVK  217 (307)
Q Consensus       148 ~~~~-~-----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~----~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~  217 (307)
                      .... +     ...+++.+...|...|++++|...+.+..+....    .....++..+...|...|++++|.+.+++..
T Consensus       172 ~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al  251 (383)
T 3ulq_A          172 IYKEHEAYNIRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAI  251 (383)
T ss_dssp             HHHTCSTTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHhCccchHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence            3111 1     2357888889999999999999999988754210    1123478889999999999999999999887


Q ss_pred             hC----CC-CCCHHhHHHHHHHHHccCcHHHHHHHHHHHHHc----CCCCcHhhHHHHHHHHhhchh---HHHHHHHHHH
Q 021791          218 GS----EL-GLDLDSYTMLIHGLCEKQKWKEACQYFVEMIEK----GLLPQKVTFETLYRGLIQSDM---LRTWRRLKKK  285 (307)
Q Consensus       218 ~~----~~-~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~----~~~p~~~~~~~l~~~~~~~g~---~~~a~~~~~~  285 (307)
                      ..    +. +....++..+..+|...|++++|...+++..+.    +-+.....+..+...+...|+   .++|..++++
T Consensus       252 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~  331 (383)
T 3ulq_A          252 AVFEESNILPSLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLES  331 (383)
T ss_dssp             HHHHHTTCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHH
T ss_pred             HHHHhhccchhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH
Confidence            62    22 224567889999999999999999999998764    111122335667778888888   7777777766


Q ss_pred             h
Q 021791          286 L  286 (307)
Q Consensus       286 ~  286 (307)
                      .
T Consensus       332 ~  332 (383)
T 3ulq_A          332 K  332 (383)
T ss_dssp             T
T ss_pred             C
Confidence            5

>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A

Probab=99.50  E-value=7.2e-13  Score=103.16  Aligned_cols=226  Identities=14%  Similarity=0.052  Sum_probs=158.0

Q ss_pred             HHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCchhHHHHHHHHHHc------CC-CCchhhHHHHHHHHHhcCC
Q 021791           62 EKTIRNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHKPQLSLDKLNFMKEK------GI-CPTVATYTSVVKCLCSCGR  134 (307)
Q Consensus        62 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~------~~-~~~~~~~~~ll~~~~~~~~  134 (307)
                      ...+++|++++++......+....++..+...+...|++++|...+++..+.      +- +....++..+...|...|+
T Consensus        21 ~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~  100 (283)
T 3edt_B           21 VPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGK  100 (283)
T ss_dssp             HHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTTTC
T ss_pred             HHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhcc
Confidence            4556777777777765433445678899999999999999999999988765      22 2246678899999999999


Q ss_pred             hHHHHHHHHHHHhC------C-CCCCHhhHHHHHHHHhcCCChhHHHHHHHHHhhc------CCCCccHHHHHHHHHHHH
Q 021791          135 IEDAEELLGEMVRN------G-VSPSAETYNCFFKEYRGRKDANGAMKLYRQMKED------DLCVPNIHTYNILIGMFM  201 (307)
Q Consensus       135 ~~~a~~~~~~~~~~------~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~------~~~~~~~~~~~~l~~~~~  201 (307)
                      +++|...+++....      . .+....++..+...|...|++++|...+++....      ...+....++..+...+.
T Consensus       101 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~  180 (283)
T 3edt_B          101 YKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYL  180 (283)
T ss_dssp             HHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHH
Confidence            99999999988764      1 1224567888999999999999999999998775      111334678889999999


Q ss_pred             hcCcHHHHHHHHHHHhhC-------CCCCC-HHhHHHHHHHHHccCc------HHHHHHHHHHHHHcCCCCcHhhHHHHH
Q 021791          202 ALNRMDMVREIWNHVKGS-------ELGLD-LDSYTMLIHGLCEKQK------WKEACQYFVEMIEKGLLPQKVTFETLY  267 (307)
Q Consensus       202 ~~~~~~~a~~~~~~~~~~-------~~~~~-~~~~~~li~~~~~~g~------~~~a~~~~~~~~~~~~~p~~~~~~~l~  267 (307)
                      ..|++++|...++.+...       ...+. ...|..+...+...+.      +..+...++.... .......++..+.
T Consensus       181 ~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~la  259 (283)
T 3edt_B          181 KQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKV-DSPTVNTTLRSLG  259 (283)
T ss_dssp             HHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCC-CCHHHHHHHHHHH
T ss_pred             HcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCC-CCHHHHHHHHHHH
Confidence            999999999999988753       11222 2233333333333222      2233222222211 1122345688888


Q ss_pred             HHHhhchhHHHHHHHHHHhhh
Q 021791          268 RGLIQSDMLRTWRRLKKKLDE  288 (307)
Q Consensus       268 ~~~~~~g~~~~a~~~~~~~~~  288 (307)
                      ..|...|++++|..++++..+
T Consensus       260 ~~~~~~g~~~~A~~~~~~al~  280 (283)
T 3edt_B          260 ALYRRQGKLEAAHTLEDCASR  280 (283)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHT
T ss_pred             HHHHHcCCHHHHHHHHHHHHH
Confidence            999999999999999998754

>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}

Probab=99.48  E-value=3.5e-11  Score=90.80  Aligned_cols=195  Identities=10%  Similarity=0.004  Sum_probs=133.4

Q ss_pred             CCHHHHHHHHHHHHhcCCchhHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHhhHHHHH
Q 021791           82 PDVTSFSIVLHVYSRAHKPQLSLDKLNFMKEKGICPTVATYTSVVKCLCSCGRIEDAEELLGEMVRNGVSPSAETYNCFF  161 (307)
Q Consensus        82 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~  161 (307)
                      .|+..+......+...|++++|...|+...+....++...+..+..++...|++++|...+++....... +...+..+.
T Consensus         5 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~   83 (228)
T 4i17_A            5 TDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYN-LANAYIGKS   83 (228)
T ss_dssp             CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCS-HHHHHHHHH
T ss_pred             cCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcc-hHHHHHHHH
Confidence            3567777788888888888888888888887764356777777888888888888888888888876443 566778888


Q ss_pred             HHHhcCCChhHHHHHHHHHhhcCCCCccH-------HHHHHHHHHHHhcCcHHHHHHHHHHHhhCCCCCC---HHhHHHH
Q 021791          162 KEYRGRKDANGAMKLYRQMKEDDLCVPNI-------HTYNILIGMFMALNRMDMVREIWNHVKGSELGLD---LDSYTML  231 (307)
Q Consensus       162 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l  231 (307)
                      ..+...|++++|...+++..+..  +.+.       ..|..+...+...|++++|.+.++...+.  .|+   ...+..+
T Consensus        84 ~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~l  159 (228)
T 4i17_A           84 AAYRDMKNNQEYIATLTEGIKAV--PGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDV--TSKKWKTDALYSL  159 (228)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHS--TTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS--SCHHHHHHHHHHH
T ss_pred             HHHHHcccHHHHHHHHHHHHHHC--CCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhc--CCCcccHHHHHHH
Confidence            88888888888888888888764  3444       45777777788888888888888888775  344   4556666


Q ss_pred             HHHHHccCcHHHHHHHHHHHHHcCCCCcHhhHHHHHHHHhhchhHHHHHHHHHHhhhc
Q 021791          232 IHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDEE  289 (307)
Q Consensus       232 i~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~  289 (307)
                      ..+|...|+     ..++++...+ ..+...+....  ....+.+++|...+++..+.
T Consensus       160 ~~~~~~~~~-----~~~~~a~~~~-~~~~~~~~~~~--~~~~~~~~~A~~~~~~a~~l  209 (228)
T 4i17_A          160 GVLFYNNGA-----DVLRKATPLA-SSNKEKYASEK--AKADAAFKKAVDYLGEAVTL  209 (228)
T ss_dssp             HHHHHHHHH-----HHHHHHGGGT-TTCHHHHHHHH--HHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHH-----HHHHHHHhcc-cCCHHHHHHHH--HHHHHHHHHHHHHHHHHhhc
Confidence            666655443     3334433332 12222332222  23345566666666665544

>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}

Probab=99.47  E-value=5.1e-13  Score=110.10  Aligned_cols=240  Identities=10%  Similarity=-0.016  Sum_probs=182.0

Q ss_pred             HHHHHHHHHHHhcCchhhHHHHHHHHHhc----CC-CCcHHHHHHHHHHHHhhCCCCcchhhHHHHHHHHHHHHHHHhc-
Q 021791            5 KMYTSLIYGWCKINRIDMAERFLGEMIER----GV-EPNVVTYNVLLNGVCRRASLHPNERFEKTIRNAEKVFDEMRVR-   78 (307)
Q Consensus         5 ~~~~~li~~~~~~g~~~~a~~~~~~~~~~----~~-~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~-   78 (307)
                      ..|..+...|...|++++|.+.|++..+.    +. ......+..+...+..          .|++++|...+++..+. 
T Consensus        87 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~----------~g~~~~A~~~~~~al~~~  156 (411)
T 4a1s_A           87 AIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKSSGNLGNTLKV----------MGRFDEAAICCERHLTLA  156 (411)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH----------TTCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHHHHHHHHHHHH----------CCCHHHHHHHHHHHHHHH
Confidence            57888999999999999999999988654    11 2234567777778888          67778888888776553 


Q ss_pred             ---C-CCCCHHHHHHHHHHHHhcCC-----------------chhHHHHHHHHHHc----CC-CCchhhHHHHHHHHHhc
Q 021791           79 ---G-IEPDVTSFSIVLHVYSRAHK-----------------PQLSLDKLNFMKEK----GI-CPTVATYTSVVKCLCSC  132 (307)
Q Consensus        79 ---~-~~~~~~~~~~ll~~~~~~~~-----------------~~~a~~~~~~~~~~----~~-~~~~~~~~~ll~~~~~~  132 (307)
                         + .+....++..+...+...|+                 +++|.+.+++..+.    +. .....++..+...|...
T Consensus       157 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~  236 (411)
T 4a1s_A          157 RQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQENLKLMRDLGDRGAQGRACGNLGNTYYLL  236 (411)
T ss_dssp             HHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHT
T ss_pred             HHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHc
Confidence               1 12234578888999999999                 99999998876543    11 11345788889999999


Q ss_pred             CChHHHHHHHHHHHhCCCC-CC----HhhHHHHHHHHhcCCChhHHHHHHHHHhhcCCC----CccHHHHHHHHHHHHhc
Q 021791          133 GRIEDAEELLGEMVRNGVS-PS----AETYNCFFKEYRGRKDANGAMKLYRQMKEDDLC----VPNIHTYNILIGMFMAL  203 (307)
Q Consensus       133 ~~~~~a~~~~~~~~~~~~~-~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~----~~~~~~~~~l~~~~~~~  203 (307)
                      |++++|...+++....... ++    ..++..+...|...|++++|...+++.......    .....++..+...+...
T Consensus       237 g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~  316 (411)
T 4a1s_A          237 GDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLL  316 (411)
T ss_dssp             TCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred             CChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHc
Confidence            9999999999988754211 11    237788899999999999999999987664210    11256788899999999


Q ss_pred             CcHHHHHHHHHHHhhCCC-----CCCHHhHHHHHHHHHccCcHHHHHHHHHHHHHc
Q 021791          204 NRMDMVREIWNHVKGSEL-----GLDLDSYTMLIHGLCEKQKWKEACQYFVEMIEK  254 (307)
Q Consensus       204 ~~~~~a~~~~~~~~~~~~-----~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~  254 (307)
                      |++++|...+++......     .....++..+...|...|++++|...+++..+.
T Consensus       317 g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  372 (411)
T 4a1s_A          317 HEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGGHERALKYAEQHLQL  372 (411)
T ss_dssp             TCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence            999999999998765310     012347788889999999999999999998765

>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*

Probab=99.47  E-value=3.9e-12  Score=111.23  Aligned_cols=166  Identities=11%  Similarity=0.019  Sum_probs=147.6

Q ss_pred             chhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHhcCCChhHHHHHHHHHhhcCCCCccHHHHHHHH
Q 021791          118 TVATYTSVVKCLCSCGRIEDAEELLGEMVRNGVSPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDDLCVPNIHTYNILI  197 (307)
Q Consensus       118 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~  197 (307)
                      +..+++.+...|.+.|++++|+..|++..+.... +..++..+..+|.+.|++++|...|++..+..  +.+...|..+.
T Consensus         8 ~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~-~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~--P~~~~a~~nLg   84 (723)
T 4gyw_A            8 HADSLNNLANIKREQGNIEEAVRLYRKALEVFPE-FAAAHSNLASVLQQQGKLQEALMHYKEAIRIS--PTFADAYSNMG   84 (723)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHH
Confidence            4678999999999999999999999999987544 68899999999999999999999999999886  66788999999


Q ss_pred             HHHHhcCcHHHHHHHHHHHhhCCCCCCHHhHHHHHHHHHccCcHHHHHHHHHHHHHcCCCCcHhhHHHHHHHHhhchhHH
Q 021791          198 GMFMALNRMDMVREIWNHVKGSELGLDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQSDMLR  277 (307)
Q Consensus       198 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~  277 (307)
                      .++...|++++|++.+++..+.... +...|..+..+|...|++++|+..|++.++.. +-+...+..+..++...|+++
T Consensus        85 ~~l~~~g~~~~A~~~~~kAl~l~P~-~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~-P~~~~a~~~L~~~l~~~g~~~  162 (723)
T 4gyw_A           85 NTLKEMQDVQGALQCYTRAIQINPA-FADAHSNLASIHKDSGNIPEAIASYRTALKLK-PDFPDAYCNLAHCLQIVCDWT  162 (723)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCCT
T ss_pred             HHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHhhhhhHHHhcccHH
Confidence            9999999999999999999887533 68899999999999999999999999999863 235678899999999999999


Q ss_pred             HHHHHHHHhhh
Q 021791          278 TWRRLKKKLDE  288 (307)
Q Consensus       278 ~a~~~~~~~~~  288 (307)
                      +|.+.+++..+
T Consensus       163 ~A~~~~~kal~  173 (723)
T 4gyw_A          163 DYDERMKKLVS  173 (723)
T ss_dssp             THHHHHHHHHH
T ss_pred             HHHHHHHHHHH
Confidence            99888887643

>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}

Probab=99.46  E-value=4.4e-11  Score=97.51  Aligned_cols=222  Identities=10%  Similarity=-0.021  Sum_probs=146.5

Q ss_pred             HHHHHHHHHHHHHHHhcCC-CC----CHHHHHHHHHHHHhcCCchhHHHHHHHHHHcC----C-C-CchhhHHHHHHHHH
Q 021791           62 EKTIRNAEKVFDEMRVRGI-EP----DVTSFSIVLHVYSRAHKPQLSLDKLNFMKEKG----I-C-PTVATYTSVVKCLC  130 (307)
Q Consensus        62 ~~~~~~a~~~~~~~~~~~~-~~----~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~----~-~-~~~~~~~~ll~~~~  130 (307)
                      .|++++|...|++..+... .+    ...++..+...|...|+++.|...+++..+..    . . ....+++.+...|.
T Consensus       114 ~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~y~  193 (378)
T 3q15_A          114 QKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLFVIAGNYD  193 (378)
T ss_dssp             TTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHH
T ss_pred             HCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHH
Confidence            4566778887777765310 11    23467777778888888888888887765431    1 1 12456677788888


Q ss_pred             hcCChHHHHHHHHHHHhC----CCC-CCHhhHHHHHHHHhcCCChhHHHHHHHHHhh-----cCCCCccHHHHHHHHHHH
Q 021791          131 SCGRIEDAEELLGEMVRN----GVS-PSAETYNCFFKEYRGRKDANGAMKLYRQMKE-----DDLCVPNIHTYNILIGMF  200 (307)
Q Consensus       131 ~~~~~~~a~~~~~~~~~~----~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-----~~~~~~~~~~~~~l~~~~  200 (307)
                      ..|++++|...+++..+.    +.. ....++..+...|...|++++|...+.+...     ..  +....++..+...+
T Consensus       194 ~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~--~~~~~~~~~la~~~  271 (378)
T 3q15_A          194 DFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVP--DLLPKVLFGLSWTL  271 (378)
T ss_dssp             HTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCG--GGHHHHHHHHHHHH
T ss_pred             HhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCC--hhHHHHHHHHHHHH
Confidence            888888888888776652    111 1134666777788888888888888887766     33  33466777788888


Q ss_pred             HhcCcHHHHHHHHHHHhhCC----CCCCHHhHHHHHHHHHccCc---HHHHHHHHHHHHHcCCCCc-HhhHHHHHHHHhh
Q 021791          201 MALNRMDMVREIWNHVKGSE----LGLDLDSYTMLIHGLCEKQK---WKEACQYFVEMIEKGLLPQ-KVTFETLYRGLIQ  272 (307)
Q Consensus       201 ~~~~~~~~a~~~~~~~~~~~----~~~~~~~~~~li~~~~~~g~---~~~a~~~~~~~~~~~~~p~-~~~~~~l~~~~~~  272 (307)
                      .+.|++++|...+++.....    .+.....+..+...+...++   +.+|+..+++   .+..|+ ...+..+...|..
T Consensus       272 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~---~~~~~~~~~~~~~la~~y~~  348 (378)
T 3q15_A          272 CKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEK---KNLHAYIEACARSAAAVFES  348 (378)
T ss_dssp             HHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHH---TTCHHHHHHHHHHHHHHHHH
T ss_pred             HHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHh---CCChhHHHHHHHHHHHHHHH
Confidence            88888888888888766531    11123345555566666777   6666666665   222232 2356677888889


Q ss_pred             chhHHHHHHHHHHhhh
Q 021791          273 SDMLRTWRRLKKKLDE  288 (307)
Q Consensus       273 ~g~~~~a~~~~~~~~~  288 (307)
                      .|++++|...+++..+
T Consensus       349 ~g~~~~A~~~~~~al~  364 (378)
T 3q15_A          349 SCHFEQAAAFYRKVLK  364 (378)
T ss_dssp             TTCHHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHH
Confidence            9999999998887654

>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}

Probab=99.45  E-value=4.7e-11  Score=90.12  Aligned_cols=201  Identities=11%  Similarity=0.047  Sum_probs=158.0

Q ss_pred             CcHHHHHHHHHHHHhhCCCCcchhhHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCchhHHHHHHHHHHcCCC
Q 021791           37 PNVVTYNVLLNGVCRRASLHPNERFEKTIRNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHKPQLSLDKLNFMKEKGIC  116 (307)
Q Consensus        37 p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~  116 (307)
                      .|+..+......+..          .|++++|...|++..+...+++...+..+..++...|++++|++.++...+....
T Consensus         5 ~~~~~~~~~g~~~~~----------~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~   74 (228)
T 4i17_A            5 TDPNQLKNEGNDALN----------AKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYN   74 (228)
T ss_dssp             CCHHHHHHHHHHHHH----------TTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCS
T ss_pred             cCHHHHHHHHHHHHH----------ccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcc
Confidence            355777777788888          8899999999999998864478888888999999999999999999999987543


Q ss_pred             CchhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCH-------hhHHHHHHHHhcCCChhHHHHHHHHHhhcCCCCc-
Q 021791          117 PTVATYTSVVKCLCSCGRIEDAEELLGEMVRNGVSPSA-------ETYNCFFKEYRGRKDANGAMKLYRQMKEDDLCVP-  188 (307)
Q Consensus       117 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~-------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-  188 (307)
                       +..++..+...|...|++++|...+++..+.... +.       ..|..+...+...|++++|...|++..+..  +. 
T Consensus        75 -~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~--p~~  150 (228)
T 4i17_A           75 -LANAYIGKSAAYRDMKNNQEYIATLTEGIKAVPG-NATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDVT--SKK  150 (228)
T ss_dssp             -HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSS--CHH
T ss_pred             -hHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCC-cHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhcC--CCc
Confidence             7788999999999999999999999999986443 44       457888888999999999999999999874  44 


Q ss_pred             -cHHHHHHHHHHHHhcCcHHHHHHHHHHHhhCCCCCCHHhHHHHHHHHHccCcHHHHHHHHHHHHHcCCCCcHh
Q 021791          189 -NIHTYNILIGMFMALNRMDMVREIWNHVKGSELGLDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKV  261 (307)
Q Consensus       189 -~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~  261 (307)
                       +...+..+...+...|     ...++.+...+ ..+...|.....  ...+.+++|+..+++..+.  .|+..
T Consensus       151 ~~~~~~~~l~~~~~~~~-----~~~~~~a~~~~-~~~~~~~~~~~~--~~~~~~~~A~~~~~~a~~l--~p~~~  214 (228)
T 4i17_A          151 WKTDALYSLGVLFYNNG-----ADVLRKATPLA-SSNKEKYASEKA--KADAAFKKAVDYLGEAVTL--SPNRT  214 (228)
T ss_dssp             HHHHHHHHHHHHHHHHH-----HHHHHHHGGGT-TTCHHHHHHHHH--HHHHHHHHHHHHHHHHHHH--CTTCH
T ss_pred             ccHHHHHHHHHHHHHHH-----HHHHHHHHhcc-cCCHHHHHHHHH--HHHHHHHHHHHHHHHHhhc--CCCCH
Confidence             5677888888776544     34455555543 224555544443  3456789999999999976  35443

>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A

Probab=99.43  E-value=1.1e-10  Score=105.89  Aligned_cols=229  Identities=10%  Similarity=0.057  Sum_probs=118.2

Q ss_pred             HHHHHHHhcCchhhHHHHHHHHHhcCCCCcHHHHHHHHHHHHhhCCCCcchhhHHHHHHHHHHHHHHHhcCCCCCHHHHH
Q 021791            9 SLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPNERFEKTIRNAEKVFDEMRVRGIEPDVTSFS   88 (307)
Q Consensus         9 ~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~   88 (307)
                      .+...+...|.+++|..+|++...     .....+.++.   .          .+++++|.++.++..      +..+|.
T Consensus      1054 eIA~Iai~lglyEEAf~IYkKa~~-----~~~A~~VLie---~----------i~nldrAiE~Aervn------~p~vWs 1109 (1630)
T 1xi4_A         1054 DIANIAISNELFEEAFAIFRKFDV-----NTSAVQVLIE---H----------IGNLDRAYEFAERCN------EPAVWS 1109 (1630)
T ss_pred             HHHHHHHhCCCHHHHHHHHHHcCC-----HHHHHHHHHH---H----------HhhHHHHHHHHHhcC------CHHHHH
Confidence            345666777777777777777521     2222233332   2          455666666655431      355566


Q ss_pred             HHHHHHHhcCCchhHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHhcCC
Q 021791           89 IVLHVYSRAHKPQLSLDKLNFMKEKGICPTVATYTSVVKCLCSCGRIEDAEELLGEMVRNGVSPSAETYNCFFKEYRGRK  168 (307)
Q Consensus        89 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~  168 (307)
                      .+..++...|++++|.+.|.+.      -|...|..++.++.+.|++++|.+.+....+..  +++...+.++.+|.+.+
T Consensus      1110 qLAKAql~~G~~kEAIdsYiKA------dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~--~e~~Idt~LafaYAKl~ 1181 (1630)
T 1xi4_A         1110 QLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIFALAKTN 1181 (1630)
T ss_pred             HHHHHHHhCCCHHHHHHHHHhc------CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc--ccccccHHHHHHHHhhc
Confidence            6666666666666666666442      255556666666666666666666666555433  12222223555555555


Q ss_pred             ChhHHHHHHHHHhhcCCCCccHHHHHHHHHHHHhcCcHHHHHHHHHHHhhCCCCCCHHhHHHHHHHHHccCcHHHHHHHH
Q 021791          169 DANGAMKLYRQMKEDDLCVPNIHTYNILIGMFMALNRMDMVREIWNHVKGSELGLDLDSYTMLIHGLCEKQKWKEACQYF  248 (307)
Q Consensus       169 ~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~  248 (307)
                      ++++...+.    .    .++...|..+...|...|++++|..+|..+         ..|..+..+|.+.|++++|.+.+
T Consensus      1182 rleele~fI----~----~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA---------~ny~rLA~tLvkLge~q~AIEaa 1244 (1630)
T 1xi4_A         1182 RLAELEEFI----N----GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQAAVDGA 1244 (1630)
T ss_pred             CHHHHHHHH----h----CCCHHHHHHHHHHHHhcCCHHHHHHHHHhh---------hHHHHHHHHHHHhCCHHHHHHHH
Confidence            555322221    1    233334444555555555555555555542         24444444455445555544444


Q ss_pred             HHHHHc------------------------CCCCcHhhHHHHHHHHhhchhHHHHHHHHHHh
Q 021791          249 VEMIEK------------------------GLLPQKVTFETLYRGLIQSDMLRTWRRLKKKL  286 (307)
Q Consensus       249 ~~~~~~------------------------~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~  286 (307)
                      ++..+.                        ++..++..+..++..|.+.|.+++|..+++.-
T Consensus      1245 rKA~n~~aWkev~~acve~~Ef~LA~~cgl~Iiv~~deLeeli~yYe~~G~feEAI~LlE~a 1306 (1630)
T 1xi4_A         1245 RKANSTRTWKEVCFACVDGKEFRLAQMCGLHIVVHADELEELINYYQDRGYFEELITMLEAA 1306 (1630)
T ss_pred             HHhCCHHHHHHHHHHHhhhhHHHHHHHHHHhhhcCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            433111                        11223444556666666666676666666554

>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A

Probab=99.43  E-value=3.4e-12  Score=99.33  Aligned_cols=161  Identities=12%  Similarity=0.043  Sum_probs=125.7

Q ss_pred             HHhcCCchhHHHHHHHHHHc-------CCCCchhhHHHHHHHHHhcCChHHHHHHHHHHHhC------CC-CCCHhhHHH
Q 021791           94 YSRAHKPQLSLDKLNFMKEK-------GICPTVATYTSVVKCLCSCGRIEDAEELLGEMVRN------GV-SPSAETYNC  159 (307)
Q Consensus        94 ~~~~~~~~~a~~~~~~~~~~-------~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~------~~-~~~~~~~~~  159 (307)
                      ....|++++|...+++..+.       ..+....++..+...|...|++++|...+++....      +. .....++..
T Consensus        11 ~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~   90 (283)
T 3edt_B           11 SSGLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNN   90 (283)
T ss_dssp             --CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHH
T ss_pred             cCCCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHH
Confidence            34577888888888777552       22234677889999999999999999999998764      22 223567888


Q ss_pred             HHHHHhcCCChhHHHHHHHHHhhc------CCCCccHHHHHHHHHHHHhcCcHHHHHHHHHHHhhC------CCCC-CHH
Q 021791          160 FFKEYRGRKDANGAMKLYRQMKED------DLCVPNIHTYNILIGMFMALNRMDMVREIWNHVKGS------ELGL-DLD  226 (307)
Q Consensus       160 l~~~~~~~~~~~~a~~~~~~~~~~------~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~------~~~~-~~~  226 (307)
                      +...|...|++++|...+.+....      ...+....++..+...+...|++++|...++++...      +..| ...
T Consensus        91 l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~  170 (283)
T 3edt_B           91 LAVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAK  170 (283)
T ss_dssp             HHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHH
T ss_pred             HHHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHH
Confidence            999999999999999999988765      111345678889999999999999999999988764      1122 345


Q ss_pred             hHHHHHHHHHccCcHHHHHHHHHHHHHc
Q 021791          227 SYTMLIHGLCEKQKWKEACQYFVEMIEK  254 (307)
Q Consensus       227 ~~~~li~~~~~~g~~~~a~~~~~~~~~~  254 (307)
                      ++..+..+|...|++++|...+++..+.
T Consensus       171 ~~~~la~~~~~~g~~~~A~~~~~~~l~~  198 (283)
T 3edt_B          171 TKNNLASCYLKQGKYQDAETLYKEILTR  198 (283)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence            7888999999999999999999998764

>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1

Probab=99.43  E-value=2.4e-11  Score=95.39  Aligned_cols=238  Identities=13%  Similarity=0.049  Sum_probs=159.7

Q ss_pred             hhHHHHHHHHHhcCCCCcHHHHHHHHHHHHhhCCCCcchhhHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCc
Q 021791           21 DMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPNERFEKTIRNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHKP  100 (307)
Q Consensus        21 ~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~  100 (307)
                      .+|.+++.+..+. .+++...| .++    +.+  .     .+++++|...|++.               ...|...|++
T Consensus         2 ~~a~~~~~~a~k~-~~~~~~~~-~~~----~~~--~-----~~~~~~A~~~~~~a---------------~~~~~~~g~~   53 (292)
T 1qqe_A            2 SDPVELLKRAEKK-GVPSSGFM-KLF----SGS--D-----SYKFEEAADLCVQA---------------ATIYRLRKEL   53 (292)
T ss_dssp             CCHHHHHHHHHHH-SSCCCTHH-HHH----SCC--S-----HHHHHHHHHHHHHH---------------HHHHHHTTCT
T ss_pred             CcHHHHHHHHHHH-hCcCCCcc-hhc----CCC--C-----CccHHHHHHHHHHH---------------HHHHHHcCCH
Confidence            4577777777665 23322223 222    200  0     23478888887776               3457788999


Q ss_pred             hhHHHHHHHHHHc----CCCCc-hhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCC-CC----HhhHHHHHHHHhcC-CC
Q 021791          101 QLSLDKLNFMKEK----GICPT-VATYTSVVKCLCSCGRIEDAEELLGEMVRNGVS-PS----AETYNCFFKEYRGR-KD  169 (307)
Q Consensus       101 ~~a~~~~~~~~~~----~~~~~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~-~~----~~~~~~l~~~~~~~-~~  169 (307)
                      ++|...|.+..+.    |-.++ ..+|+.+..+|.+.|++++|...+++....... .+    ..+++.+...|... |+
T Consensus        54 ~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~  133 (292)
T 1qqe_A           54 NLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHD  133 (292)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCC
T ss_pred             HHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcC
Confidence            9999998877553    22212 567888999999999999999999887653111 01    35778888888886 99


Q ss_pred             hhHHHHHHHHHhhcCCC--Cc--cHHHHHHHHHHHHhcCcHHHHHHHHHHHhhCCCCCCH------HhHHHHHHHHHccC
Q 021791          170 ANGAMKLYRQMKEDDLC--VP--NIHTYNILIGMFMALNRMDMVREIWNHVKGSELGLDL------DSYTMLIHGLCEKQ  239 (307)
Q Consensus       170 ~~~a~~~~~~~~~~~~~--~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~------~~~~~li~~~~~~g  239 (307)
                      +++|...|++..+....  .+  ...++..+...+...|++++|...++...........      ..|..+..++...|
T Consensus       134 ~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g  213 (292)
T 1qqe_A          134 YAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAAT  213 (292)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcC
Confidence            99999999888764210  01  1356788889999999999999999998876433222      15677778888899


Q ss_pred             cHHHHHHHHHHHHHcCCCCcHh------hHHHHHHHHh--hchhHHHHHHHHHHhhh
Q 021791          240 KWKEACQYFVEMIEKGLLPQKV------TFETLYRGLI--QSDMLRTWRRLKKKLDE  288 (307)
Q Consensus       240 ~~~~a~~~~~~~~~~~~~p~~~------~~~~l~~~~~--~~g~~~~a~~~~~~~~~  288 (307)
                      ++++|...|++.++.  .|+..      .+..++.++.  ..+++++|...++++.+
T Consensus       214 ~~~~A~~~~~~al~l--~p~~~~~~~~~~l~~l~~~~~~~~~~~~~~A~~~~~~~~~  268 (292)
T 1qqe_A          214 DAVAAARTLQEGQSE--DPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFMR  268 (292)
T ss_dssp             CHHHHHHHHHGGGCC-----------HHHHHHHHHHHHTTCTTTHHHHHHHHTTSSC
T ss_pred             CHHHHHHHHHHHHhh--CCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHhccCCc
Confidence            999999999988753  33321      2444555554  45678888888766644

>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}

Probab=99.43  E-value=2.4e-12  Score=102.67  Aligned_cols=241  Identities=11%  Similarity=-0.006  Sum_probs=180.7

Q ss_pred             HHHHHHHHHHHHhcCchhhHHHHHHHHHhc----CCCC-cHHHHHHHHHHHHhhCCCCcchhhHHHHHHHHHHHHHHHhc
Q 021791            4 VKMYTSLIYGWCKINRIDMAERFLGEMIER----GVEP-NVVTYNVLLNGVCRRASLHPNERFEKTIRNAEKVFDEMRVR   78 (307)
Q Consensus         4 ~~~~~~li~~~~~~g~~~~a~~~~~~~~~~----~~~p-~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~   78 (307)
                      ...|..+...+...|++++|.+.+++....    +..| ....+..+...+..          .|++++|...+++..+.
T Consensus        43 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~----------~g~~~~A~~~~~~al~~  112 (338)
T 3ro2_A           43 SAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNLGNTLKV----------LGNFDEAIVCCQRHLDI  112 (338)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH----------TTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHH----------ccCHHHHHHHHHHHHHH
Confidence            467888999999999999999999987543    2222 24567777778888          77888888888877553


Q ss_pred             CC-CCC----HHHHHHHHHHHHhcCC--------------------chhHHHHHHHHHHc----CC-CCchhhHHHHHHH
Q 021791           79 GI-EPD----VTSFSIVLHVYSRAHK--------------------PQLSLDKLNFMKEK----GI-CPTVATYTSVVKC  128 (307)
Q Consensus        79 ~~-~~~----~~~~~~ll~~~~~~~~--------------------~~~a~~~~~~~~~~----~~-~~~~~~~~~ll~~  128 (307)
                      .. .++    ..++..+...+...|+                    +++|.+.+++..+.    +. .....++..+...
T Consensus       113 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~  192 (338)
T 3ro2_A          113 SRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLYEENLSLVTALGDRAAQGRAFGNLGNT  192 (338)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred             HHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Confidence            10 112    3478888899999999                    89999988876543    11 1124567888899


Q ss_pred             HHhcCChHHHHHHHHHHHhCCCC-C----CHhhHHHHHHHHhcCCChhHHHHHHHHHhhcCCCCc----cHHHHHHHHHH
Q 021791          129 LCSCGRIEDAEELLGEMVRNGVS-P----SAETYNCFFKEYRGRKDANGAMKLYRQMKEDDLCVP----NIHTYNILIGM  199 (307)
Q Consensus       129 ~~~~~~~~~a~~~~~~~~~~~~~-~----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~~l~~~  199 (307)
                      +...|++++|...+++....... +    ...++..+...+...|++++|...+++.........    ...++..+...
T Consensus       193 ~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~  272 (338)
T 3ro2_A          193 HYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNT  272 (338)
T ss_dssp             HHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHH
Confidence            99999999999999988653111 1    133778888899999999999999998765421011    15677888999


Q ss_pred             HHhcCcHHHHHHHHHHHhhCC----CC-CCHHhHHHHHHHHHccCcHHHHHHHHHHHHHc
Q 021791          200 FMALNRMDMVREIWNHVKGSE----LG-LDLDSYTMLIHGLCEKQKWKEACQYFVEMIEK  254 (307)
Q Consensus       200 ~~~~~~~~~a~~~~~~~~~~~----~~-~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~  254 (307)
                      +...|++++|...++......    .. ....++..+...|...|++++|...+++..+.
T Consensus       273 ~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~  332 (338)
T 3ro2_A          273 YTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEI  332 (338)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHC
T ss_pred             HHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence            999999999999998876531    11 11346778899999999999999999998865

>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A

Probab=99.41  E-value=2.5e-10  Score=103.62  Aligned_cols=203  Identities=9%  Similarity=0.051  Sum_probs=103.3

Q ss_pred             HHHHHHHHHHHHhcCchhhHHHHHHHHHhcCCCCcHHHHHHHHHHHHhhCCCCcchhhHHHHHHHHHHHHHHHhcCCCCC
Q 021791            4 VKMYTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPNERFEKTIRNAEKVFDEMRVRGIEPD   83 (307)
Q Consensus         4 ~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~   83 (307)
                      ..+|..+..++...|++++|.+.|.+.      -|...|..++.++.+          .|++++|.+.|....+..  ++
T Consensus      1105 p~vWsqLAKAql~~G~~kEAIdsYiKA------dD~say~eVa~~~~~----------lGkyEEAIeyL~mArk~~--~e 1166 (1630)
T 1xi4_A         1105 PAVWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANT----------SGNWEELVKYLQMARKKA--RE 1166 (1630)
T ss_pred             HHHHHHHHHHHHhCCCHHHHHHHHHhc------CChHHHHHHHHHHHH----------cCCHHHHHHHHHHHHhhc--cc
Confidence            445666666666666666666666432      245555556666666          555666666665554432  22


Q ss_pred             HHHHHHHHHHHHhcCCchhHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHhhHHHHHHH
Q 021791           84 VTSFSIVLHVYSRAHKPQLSLDKLNFMKEKGICPTVATYTSVVKCLCSCGRIEDAEELLGEMVRNGVSPSAETYNCFFKE  163 (307)
Q Consensus        84 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~  163 (307)
                      +...+.++.+|++.++++....++    +   .++...|..+...|...|++++|...|...         ..|..+...
T Consensus      1167 ~~Idt~LafaYAKl~rleele~fI----~---~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA---------~ny~rLA~t 1230 (1630)
T 1xi4_A         1167 SYVETELIFALAKTNRLAELEEFI----N---GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLAST 1230 (1630)
T ss_pred             ccccHHHHHHHHhhcCHHHHHHHH----h---CCCHHHHHHHHHHHHhcCCHHHHHHHHHhh---------hHHHHHHHH
Confidence            222223555555555554322221    1   123344555566666666666666666553         255566666


Q ss_pred             HhcCCChhHHHHHHHHHhhcCCCCccHHHHHHHHHHHHhcCcHHHHHHHHHHHhhCCCCCCHHhHHHHHHHHHccCcHHH
Q 021791          164 YRGRKDANGAMKLYRQMKEDDLCVPNIHTYNILIGMFMALNRMDMVREIWNHVKGSELGLDLDSYTMLIHGLCEKQKWKE  243 (307)
Q Consensus       164 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~  243 (307)
                      +.+.|++++|.+.+++..       +..+|..+..+|...|++..|......+     ..+...+..++..|.+.|.+++
T Consensus      1231 LvkLge~q~AIEaarKA~-------n~~aWkev~~acve~~Ef~LA~~cgl~I-----iv~~deLeeli~yYe~~G~feE 1298 (1630)
T 1xi4_A         1231 LVHLGEYQAAVDGARKAN-------STRTWKEVCFACVDGKEFRLAQMCGLHI-----VVHADELEELINYYQDRGYFEE 1298 (1630)
T ss_pred             HHHhCCHHHHHHHHHHhC-------CHHHHHHHHHHHhhhhHHHHHHHHHHhh-----hcCHHHHHHHHHHHHHcCCHHH
Confidence            666666666666665542       2233333333333333333333332211     1133444455555556666666


Q ss_pred             HHHHHHHHH
Q 021791          244 ACQYFVEMI  252 (307)
Q Consensus       244 a~~~~~~~~  252 (307)
                      |+.+++..+
T Consensus      1299 AI~LlE~aL 1307 (1630)
T 1xi4_A         1299 LITMLEAAL 1307 (1630)
T ss_pred             HHHHHHHHh
Confidence            666665544

>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}

Probab=99.38  E-value=1e-10  Score=95.27  Aligned_cols=231  Identities=6%  Similarity=-0.079  Sum_probs=171.1

Q ss_pred             HHHHHHHhcCchhhHHHHHHHHHhcC-CCC----cHHHHHHHHHHHHhhCCCCcchhhHHHHHHHHHHHHHHHhc----C
Q 021791            9 SLIYGWCKINRIDMAERFLGEMIERG-VEP----NVVTYNVLLNGVCRRASLHPNERFEKTIRNAEKVFDEMRVR----G   79 (307)
Q Consensus         9 ~li~~~~~~g~~~~a~~~~~~~~~~~-~~p----~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~----~   79 (307)
                      .....+...|++++|...|++..+.. ..+    ...++..+...+..          .|+++.|...+++..+.    +
T Consensus       106 ~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~----------~~~~~~A~~~~~~al~~~~~~~  175 (378)
T 3q15_A          106 FRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYH----------MKQTHVSMYHILQALDIYQNHP  175 (378)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHH----------TTCHHHHHHHHHHHHHHHHTST
T ss_pred             HHHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHH----------cCCcHHHHHHHHHHHHHHHhCC
Confidence            34556678999999999999987641 112    24567777778888          67778888887776543    1


Q ss_pred             -CCC-CHHHHHHHHHHHHhcCCchhHHHHHHHHHHc----CCC-CchhhHHHHHHHHHhcCChHHHHHHHHHHHh-----
Q 021791           80 -IEP-DVTSFSIVLHVYSRAHKPQLSLDKLNFMKEK----GIC-PTVATYTSVVKCLCSCGRIEDAEELLGEMVR-----  147 (307)
Q Consensus        80 -~~~-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~----~~~-~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~-----  147 (307)
                       ..+ ...+++.+..+|...|++++|.+.+++..+.    +.. ....++..+..+|...|++++|...+++...     
T Consensus       176 ~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~  255 (378)
T 3q15_A          176 LYSIRTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREK  255 (378)
T ss_dssp             TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHH
T ss_pred             CchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhh
Confidence             111 2557888999999999999999999887653    211 1245678899999999999999999999887     


Q ss_pred             CCCCCCHhhHHHHHHHHhcCCChhHHHHHHHHHhhcCCC---CccHHHHHHHHHHHHhcCc---HHHHHHHHHHHhhCCC
Q 021791          148 NGVSPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDDLC---VPNIHTYNILIGMFMALNR---MDMVREIWNHVKGSEL  221 (307)
Q Consensus       148 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~---~~~~~~~~~l~~~~~~~~~---~~~a~~~~~~~~~~~~  221 (307)
                      .... ...++..+...+.+.|++++|...+++.......   +.....+..+...+...++   +.+|...++...   .
T Consensus       256 ~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~~~---~  331 (378)
T 3q15_A          256 VPDL-LPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEKKN---L  331 (378)
T ss_dssp             CGGG-HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHTT---C
T ss_pred             CChh-HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhCC---C
Confidence            4333 3678888999999999999999999998765321   2234456666667777788   777777776632   2


Q ss_pred             CC-CHHhHHHHHHHHHccCcHHHHHHHHHHHHH
Q 021791          222 GL-DLDSYTMLIHGLCEKQKWKEACQYFVEMIE  253 (307)
Q Consensus       222 ~~-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~  253 (307)
                      .| ....+..+...|...|++++|...|++..+
T Consensus       332 ~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~  364 (378)
T 3q15_A          332 HAYIEACARSAAAVFESSCHFEQAAAFYRKVLK  364 (378)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence            22 234567788999999999999999998865

>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}

Probab=99.36  E-value=2.9e-09  Score=88.84  Aligned_cols=260  Identities=11%  Similarity=0.035  Sum_probs=178.6

Q ss_pred             HHHHHHHHHHHhcCchhhHHHHHHHHHhcCCCCcHHHHHHHHHHHHhhCCCCcchhhHHHHHHHHHHHHHHHhcCCCCCH
Q 021791            5 KMYTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPNERFEKTIRNAEKVFDEMRVRGIEPDV   84 (307)
Q Consensus         5 ~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~   84 (307)
                      ..+..+...|...+.++++.+....+.+.....+...+..|-..+...|.       ..+.++|++.|++..+.| .++.
T Consensus       142 ~a~~~Lg~~y~~~~~~~~~~~~a~~~~~~a~~~~~~a~~~Lg~~~~~~g~-------~~~~~~A~~~~~~aa~~g-~~~a  213 (452)
T 3e4b_A          142 EAGLAQVLLYRTQGTYDQHLDDVERICKAALNTTDICYVELATVYQKKQQ-------PEQQAELLKQMEAGVSRG-TVTA  213 (452)
T ss_dssp             THHHHHHHHHHHHTCGGGGHHHHHHHHHHHTTTCTTHHHHHHHHHHHTTC-------HHHHHHHHHHHHHHHHTT-CSCH
T ss_pred             HHHHHHHHHHHcCCCcccCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-------cccHHHHHHHHHHHHHCC-CHHH
Confidence            34455666666666555555544443333222233467777777777332       348899999999988887 4466


Q ss_pred             HHHHHHHHHHHhc----CCchhHHHHHHHHHHcCCCCchhhHHHHHHH-H--HhcCChHHHHHHHHHHHhCCCCCCHhhH
Q 021791           85 TSFSIVLHVYSRA----HKPQLSLDKLNFMKEKGICPTVATYTSVVKC-L--CSCGRIEDAEELLGEMVRNGVSPSAETY  157 (307)
Q Consensus        85 ~~~~~ll~~~~~~----~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~-~--~~~~~~~~a~~~~~~~~~~~~~~~~~~~  157 (307)
                      ..+..|...|...    +++++|.+.|+... .|   +...+..+... +  ...+++++|...|++..+.|   +...+
T Consensus       214 ~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa-~g---~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g---~~~A~  286 (452)
T 3e4b_A          214 QRVDSVARVLGDATLGTPDEKTAQALLEKIA-PG---YPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAAD---QPRAE  286 (452)
T ss_dssp             HHHHHHHHHHTCGGGSSCCHHHHHHHHHHHG-GG---STHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTT---CHHHH
T ss_pred             HHHHHHHHHHhCCCCCCCCHHHHHHHHHHHc-CC---CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCC---CHHHH
Confidence            6656677777554    68889999998887 33   55666667666 4  56889999999999988765   66677


Q ss_pred             HHHHHHHhcCC-----ChhHHHHHHHHHhhcCCCCccHHHHHHHHHHHHh----cCcHHHHHHHHHHHhhCCCCCCHHhH
Q 021791          158 NCFFKEYRGRK-----DANGAMKLYRQMKEDDLCVPNIHTYNILIGMFMA----LNRMDMVREIWNHVKGSELGLDLDSY  228 (307)
Q Consensus       158 ~~l~~~~~~~~-----~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~  228 (307)
                      ..+...|. .|     ++++|...|++.. .+    +...+..|...|..    ..+.++|.+.|+...+.|   +....
T Consensus       287 ~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa-~g----~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g---~~~A~  357 (452)
T 3e4b_A          287 LLLGKLYY-EGKWVPADAKAAEAHFEKAV-GR----EVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARNG---QNSAD  357 (452)
T ss_dssp             HHHHHHHH-HCSSSCCCHHHHHHHHHTTT-TT----CHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTTT---CTTHH
T ss_pred             HHHHHHHH-cCCCCCCCHHHHHHHHHHHh-CC----CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhhC---hHHHH
Confidence            77777776 44     8899999998887 33    45666777777765    348899999999988876   34455


Q ss_pred             HHHHHHHHc----cCcHHHHHHHHHHHHHcCCCCcHhhHHHHHHHHhhchhHHHHHHHHHHhhhc
Q 021791          229 TMLIHGLCE----KQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDEE  289 (307)
Q Consensus       229 ~~li~~~~~----~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~  289 (307)
                      ..+...|..    ..+.++|..+|+...+.|. ++.......+......++.++|.++.++..+.
T Consensus       358 ~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~~g~-~~a~~~l~~l~~~~~~~~~~~a~~~~~~~~~~  421 (452)
T 3e4b_A          358 FAIAQLFSQGKGTKPDPLNAYVFSQLAKAQDT-PEANDLATQLEAPLTPAQRAEGQRLVQQELAA  421 (452)
T ss_dssp             HHHHHHHHSCTTBCCCHHHHHHHHHHHHTTCC-HHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhCCCCCCCHHHHHHHHHHHHHCCC-HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHh
Confidence            666666653    4588999999999988874 34444444444455667888888888876554

>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}

Probab=99.35  E-value=5.1e-11  Score=91.92  Aligned_cols=193  Identities=7%  Similarity=0.004  Sum_probs=143.7

Q ss_pred             CCCHHHHHHHHHHHHhcCCchhHHHHHHHHHHcCCCCc---hhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCC-C-CHh
Q 021791           81 EPDVTSFSIVLHVYSRAHKPQLSLDKLNFMKEKGICPT---VATYTSVVKCLCSCGRIEDAEELLGEMVRNGVS-P-SAE  155 (307)
Q Consensus        81 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~-~-~~~  155 (307)
                      +.+...+..+...+.+.|++++|...|+.+.+.... +   ...+..+..+|.+.|++++|...|++..+..+. | ...
T Consensus        12 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~-~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~   90 (261)
T 3qky_A           12 HSSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRT-HEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQ   90 (261)
T ss_dssp             CSSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSC-STTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHH
T ss_pred             CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCC-CcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHH
Confidence            346677788888999999999999999999887432 3   667888999999999999999999999886432 1 245


Q ss_pred             hHHHHHHHHhc--------CCChhHHHHHHHHHhhcCCCCccHHHH-----------------HHHHHHHHhcCcHHHHH
Q 021791          156 TYNCFFKEYRG--------RKDANGAMKLYRQMKEDDLCVPNIHTY-----------------NILIGMFMALNRMDMVR  210 (307)
Q Consensus       156 ~~~~l~~~~~~--------~~~~~~a~~~~~~~~~~~~~~~~~~~~-----------------~~l~~~~~~~~~~~~a~  210 (307)
                      .+..+..++..        .|++++|...|+++....  +.+....                 ..+...|...|++++|.
T Consensus        91 a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~--p~~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~  168 (261)
T 3qky_A           91 AEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRY--PNHELVDDATQKIRELRAKLARKQYEAARLYERRELYEAAA  168 (261)
T ss_dssp             HHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHC--TTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHC--cCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHH
Confidence            67777788888        999999999999998874  3333333                 55678888999999999


Q ss_pred             HHHHHHhhCCCCC--CHHhHHHHHHHHHcc----------CcHHHHHHHHHHHHHcCCCCcHh----hHHHHHHHHhhch
Q 021791          211 EIWNHVKGSELGL--DLDSYTMLIHGLCEK----------QKWKEACQYFVEMIEKGLLPQKV----TFETLYRGLIQSD  274 (307)
Q Consensus       211 ~~~~~~~~~~~~~--~~~~~~~li~~~~~~----------g~~~~a~~~~~~~~~~~~~p~~~----~~~~l~~~~~~~g  274 (307)
                      ..++.+.......  ....+..+..+|...          |++++|...|+++++.  .|+..    ....+-..+...+
T Consensus       169 ~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~a~~~l~~~~~~~~  246 (261)
T 3qky_A          169 VTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQI--FPDSPLLRTAEELYTRARQRLT  246 (261)
T ss_dssp             HHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHH--CTTCTHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHH--CCCChHHHHHHHHHHHHHHHHH
Confidence            9999988753221  245677777788765          8899999999999876  35442    3333344444444


Q ss_pred             hHHH
Q 021791          275 MLRT  278 (307)
Q Consensus       275 ~~~~  278 (307)
                      ++++
T Consensus       247 ~~~~  250 (261)
T 3qky_A          247 ELEG  250 (261)
T ss_dssp             HHHT
T ss_pred             Hhhh
Confidence            4443

>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}

Probab=99.33  E-value=1.1e-10  Score=97.35  Aligned_cols=157  Identities=9%  Similarity=0.028  Sum_probs=91.5

Q ss_pred             hhHHHHHHHHHhcC---ChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHhcC----CChhHHHHHHHHHhhcCCCCccHHH
Q 021791          120 ATYTSVVKCLCSCG---RIEDAEELLGEMVRNGVSPSAETYNCFFKEYRGR----KDANGAMKLYRQMKEDDLCVPNIHT  192 (307)
Q Consensus       120 ~~~~~ll~~~~~~~---~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----~~~~~a~~~~~~~~~~~~~~~~~~~  192 (307)
                      ..+..+...|...|   +.++|+..|++..+.|.. +...+..+...|...    +++++|...|++.. .+    +...
T Consensus       177 ~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~~-~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa-~g----~~~a  250 (452)
T 3e4b_A          177 ICYVELATVYQKKQQPEQQAELLKQMEAGVSRGTV-TAQRVDSVARVLGDATLGTPDEKTAQALLEKIA-PG----YPAS  250 (452)
T ss_dssp             THHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCS-CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHG-GG----STHH
T ss_pred             HHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCCH-HHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHc-CC----CHHH
Confidence            35556666666666   666666666666666533 444444455555443    56667777776665 32    2334


Q ss_pred             HHHHHHH-H--HhcCcHHHHHHHHHHHhhCCCCCCHHhHHHHHHHHHccC-----cHHHHHHHHHHHHHcCCCCcHhhHH
Q 021791          193 YNILIGM-F--MALNRMDMVREIWNHVKGSELGLDLDSYTMLIHGLCEKQ-----KWKEACQYFVEMIEKGLLPQKVTFE  264 (307)
Q Consensus       193 ~~~l~~~-~--~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g-----~~~~a~~~~~~~~~~~~~p~~~~~~  264 (307)
                      +..|... +  ...++.++|.+.|++..+.|   +...+..+...|. .|     ++++|...|++.. .|   ++....
T Consensus       251 ~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa-~g---~~~A~~  322 (452)
T 3e4b_A          251 WVSLAQLLYDFPELGDVEQMMKYLDNGRAAD---QPRAELLLGKLYY-EGKWVPADAKAAEAHFEKAV-GR---EVAADY  322 (452)
T ss_dssp             HHHHHHHHHHSGGGCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTTT-TT---CHHHHH
T ss_pred             HHHHHHHHHhCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHh-CC---CHHHHH
Confidence            4444444 2  34667777777777766654   5556666666555 44     6777777777665 22   444455


Q ss_pred             HHHHHHhh----chhHHHHHHHHHHhhhcC
Q 021791          265 TLYRGLIQ----SDMLRTWRRLKKKLDEES  290 (307)
Q Consensus       265 ~l~~~~~~----~g~~~~a~~~~~~~~~~~  290 (307)
                      .|...|..    ..+.++|..++++..+.|
T Consensus       323 ~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g  352 (452)
T 3e4b_A          323 YLGQIYRRGYLGKVYPQKALDHLLTAARNG  352 (452)
T ss_dssp             HHHHHHHTTTTSSCCHHHHHHHHHHHHTTT
T ss_pred             HHHHHHHCCCCCCcCHHHHHHHHHHHHhhC
Confidence            55555544    237777777777766554

>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B

Probab=99.33  E-value=1.9e-09  Score=83.64  Aligned_cols=144  Identities=9%  Similarity=0.030  Sum_probs=68.5

Q ss_pred             HHHHHHHHHHcCCCCchhhHHHHHHHHHhcCChHHHHHHHHHHHhCCC-CCCHhhHHHHHHHHhcCCChhHHHHHHHHHh
Q 021791          103 SLDKLNFMKEKGICPTVATYTSVVKCLCSCGRIEDAEELLGEMVRNGV-SPSAETYNCFFKEYRGRKDANGAMKLYRQMK  181 (307)
Q Consensus       103 a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~  181 (307)
                      +...+++....+ .++..++..+..++...|++++|++++.+....+. .-+...+..++..+.+.|+.+.|.+.++.|.
T Consensus        85 a~~~l~~l~~~~-~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~  163 (310)
T 3mv2_B           85 NIEELENLLKDK-QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYT  163 (310)
T ss_dssp             CCHHHHHTTTTS-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhcC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence            344444444433 22334444555555555555555555555544332 1134455555555555555555555555555


Q ss_pred             hcCCCCc-----cHHHHHHHHHHHH--hcC--cHHHHHHHHHHHhhCCCCCCHHhHHHHHHHHHccCcHHHHHHHHHHHH
Q 021791          182 EDDLCVP-----NIHTYNILIGMFM--ALN--RMDMVREIWNHVKGSELGLDLDSYTMLIHGLCEKQKWKEACQYFVEMI  252 (307)
Q Consensus       182 ~~~~~~~-----~~~~~~~l~~~~~--~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~  252 (307)
                      +.   .|     +..+...|+.++.  ..|  +..+|..+|+++...  .|+..+-..++.++.+.|++++|...++.+.
T Consensus       164 ~~---~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~--~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~  238 (310)
T 3mv2_B          164 NA---IEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQT--FPTWKTQLGLLNLHLQQRNIAEAQGIVELLL  238 (310)
T ss_dssp             HH---SCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTT--SCSHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred             hc---CccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh--CCCcccHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            44   23     2333444443322  122  555555555555443  2332222233335555555555555555443

>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A

Probab=99.32  E-value=2.6e-10  Score=77.96  Aligned_cols=125  Identities=15%  Similarity=0.212  Sum_probs=53.7

Q ss_pred             HHHHHHHhcCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHhcCCChhHHHHHHHHHhhcCCCCccHHHHHHHHHHHHhc
Q 021791          124 SVVKCLCSCGRIEDAEELLGEMVRNGVSPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDDLCVPNIHTYNILIGMFMAL  203 (307)
Q Consensus       124 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  203 (307)
                      .+...+...|++++|..+++++...+.. +...+..+...+...|++++|...++++....  +.+...+..+...+...
T Consensus         6 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~~~~   82 (136)
T 2fo7_A            6 NLGNAYYKQGDYDEAIEYYQKALELDPR-SAEAWYNLGNAYYKQGDYDEAIEYYQKALELD--PRSAEAWYNLGNAYYKQ   82 (136)
T ss_dssp             HHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHcCcHHHHHHHHHHHHHcCCc-chhHHHHHHHHHHHhcCHHHHHHHHHHHHHHC--CCchHHHHHHHHHHHHh
Confidence            3344444444444444444444433211 33334444444444444444444444444332  23333444444444444


Q ss_pred             CcHHHHHHHHHHHhhCCCCCCHHhHHHHHHHHHccCcHHHHHHHHHHHH
Q 021791          204 NRMDMVREIWNHVKGSELGLDLDSYTMLIHGLCEKQKWKEACQYFVEMI  252 (307)
Q Consensus       204 ~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~  252 (307)
                      |++++|.+.++.+.... +.+...+..+...+...|++++|...++++.
T Consensus        83 ~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~  130 (136)
T 2fo7_A           83 GDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKAL  130 (136)
T ss_dssp             TCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHH
T ss_pred             cCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHHccHHHHHHHHHHHH
Confidence            44444444444444332 1133344444444444455555554444444

>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A

Probab=99.31  E-value=3.3e-10  Score=77.47  Aligned_cols=130  Identities=13%  Similarity=0.131  Sum_probs=112.6

Q ss_pred             HHHHHHHHHHhcCCchhHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHh
Q 021791           86 SFSIVLHVYSRAHKPQLSLDKLNFMKEKGICPTVATYTSVVKCLCSCGRIEDAEELLGEMVRNGVSPSAETYNCFFKEYR  165 (307)
Q Consensus        86 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~  165 (307)
                      .|..+...+...|++++|.++++.+.+.+. .+...+..+...+...|++++|...++++...+. .+...+..+...+.
T Consensus         3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~   80 (136)
T 2fo7_A            3 AWYNLGNAYYKQGDYDEAIEYYQKALELDP-RSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDP-RSAEAWYNLGNAYY   80 (136)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCcHHHHHHHHHHHHHcCC-cchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCC-CchHHHHHHHHHHH
Confidence            567788889999999999999999987753 3677888899999999999999999999987653 36778888999999


Q ss_pred             cCCChhHHHHHHHHHhhcCCCCccHHHHHHHHHHHHhcCcHHHHHHHHHHHhhC
Q 021791          166 GRKDANGAMKLYRQMKEDDLCVPNIHTYNILIGMFMALNRMDMVREIWNHVKGS  219 (307)
Q Consensus       166 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~  219 (307)
                      ..|++++|...++++....  +.+..++..+...+...|++++|...++.+...
T Consensus        81 ~~~~~~~A~~~~~~~~~~~--~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~  132 (136)
T 2fo7_A           81 KQGDYDEAIEYYQKALELD--PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALEL  132 (136)
T ss_dssp             TTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred             HhcCHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHHHccHHHHHHHHHHHHcc
Confidence            9999999999999998875  556788889999999999999999999988765

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}

Probab=99.31  E-value=2.5e-10  Score=84.87  Aligned_cols=169  Identities=8%  Similarity=0.035  Sum_probs=121.8

Q ss_pred             HHHHHHHHHHhcCCchhHHHHHHHHHHcCCCCchhhHHH----------------HHHHHHhcCChHHHHHHHHHHHhCC
Q 021791           86 SFSIVLHVYSRAHKPQLSLDKLNFMKEKGICPTVATYTS----------------VVKCLCSCGRIEDAEELLGEMVRNG  149 (307)
Q Consensus        86 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~----------------ll~~~~~~~~~~~a~~~~~~~~~~~  149 (307)
                      .+......+...|++++|...|+...+.... +...|..                +..+|.+.|++++|...|++..+..
T Consensus         6 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~   84 (208)
T 3urz_A            6 EMLQKVSAAIEAGQNGQAVSYFRQTIALNID-RTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQKA   84 (208)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHCHH-HHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-ChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC
Confidence            3444555667888888888888888776422 4455555                8888999999999999999998875


Q ss_pred             CCCCHhhHHHHHHHHhcCCChhHHHHHHHHHhhcCCCCccHHHHHHHHHHHHhcCc--HHHHHHHHHHHhhCCCCCCHH-
Q 021791          150 VSPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDDLCVPNIHTYNILIGMFMALNR--MDMVREIWNHVKGSELGLDLD-  226 (307)
Q Consensus       150 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~--~~~a~~~~~~~~~~~~~~~~~-  226 (307)
                      +. +...+..+...+...|++++|...|++..+..  +.+..++..+..+|...|+  .+.+...++...    .|+.. 
T Consensus        85 p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~----~~~~~~  157 (208)
T 3urz_A           85 PN-NVDCLEACAEMQVCRGQEKDALRMYEKILQLE--ADNLAANIFLGNYYYLTAEQEKKKLETDYKKLS----SPTKMQ  157 (208)
T ss_dssp             TT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHHHHHHHHHHHHHC-------CCCHHH
T ss_pred             CC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--CCCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHh----CCCchh
Confidence            44 77888889999999999999999999998876  6678888888888766554  344455555543    23333 


Q ss_pred             -hHHHHHHHHHccCcHHHHHHHHHHHHHcCCCCcHhhHH
Q 021791          227 -SYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFE  264 (307)
Q Consensus       227 -~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~  264 (307)
                       .+.....++...|++++|...|++.++  +.|+.....
T Consensus       158 ~a~~~~g~~~~~~~~~~~A~~~~~~al~--l~P~~~~~~  194 (208)
T 3urz_A          158 YARYRDGLSKLFTTRYEKARNSLQKVIL--RFPSTEAQK  194 (208)
T ss_dssp             HHHHHHHHHHHHHHTHHHHHHHHHHHTT--TSCCHHHHH
T ss_pred             HHHHHHHHHHHHccCHHHHHHHHHHHHH--hCCCHHHHH
Confidence             334445556677899999999999885  467755433

>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1

Probab=99.30  E-value=5e-10  Score=87.86  Aligned_cols=207  Identities=9%  Similarity=-0.018  Sum_probs=145.0

Q ss_pred             chhhHHHHHHHHHhcCCCCcHHHHHHHHHHHHhhCCCCcchhhHHHHHHHHHHHHHHHhc----CCCC-CHHHHHHHHHH
Q 021791           19 RIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPNERFEKTIRNAEKVFDEMRVR----GIEP-DVTSFSIVLHV   93 (307)
Q Consensus        19 ~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~----~~~~-~~~~~~~ll~~   93 (307)
                      ++++|.+.|++..               ..+..          .|++++|...|++..+.    |-++ ...+|+.+..+
T Consensus        32 ~~~~A~~~~~~a~---------------~~~~~----------~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~   86 (292)
T 1qqe_A           32 KFEEAADLCVQAA---------------TIYRL----------RKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKC   86 (292)
T ss_dssp             HHHHHHHHHHHHH---------------HHHHH----------TTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHH---------------HHHHH----------cCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence            4888888887762               23555          45556666666655442    2222 38889999999


Q ss_pred             HHhcCCchhHHHHHHHHHHcCC---CC--chhhHHHHHHHHHhc-CChHHHHHHHHHHHhCCCCC-C----HhhHHHHHH
Q 021791           94 YSRAHKPQLSLDKLNFMKEKGI---CP--TVATYTSVVKCLCSC-GRIEDAEELLGEMVRNGVSP-S----AETYNCFFK  162 (307)
Q Consensus        94 ~~~~~~~~~a~~~~~~~~~~~~---~~--~~~~~~~ll~~~~~~-~~~~~a~~~~~~~~~~~~~~-~----~~~~~~l~~  162 (307)
                      |...|++++|+..+++..+...   .+  -..++..+...|... |++++|+..|++..+..... +    ..++..+..
T Consensus        87 ~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~  166 (292)
T 1qqe_A           87 FKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCAD  166 (292)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHH
Confidence            9999999999998888765421   11  145788888999986 99999999999887642111 1    356888889


Q ss_pred             HHhcCCChhHHHHHHHHHhhcCCCCccH-----HHHHHHHHHHHhcCcHHHHHHHHHHHhhCCCCCCH------HhHHHH
Q 021791          163 EYRGRKDANGAMKLYRQMKEDDLCVPNI-----HTYNILIGMFMALNRMDMVREIWNHVKGSELGLDL------DSYTML  231 (307)
Q Consensus       163 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~-----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~------~~~~~l  231 (307)
                      .+...|++++|...|++......-.+..     ..+..+..++...|++++|...+++.....  |+.      ..+..+
T Consensus       167 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~--p~~~~~~~~~~l~~l  244 (292)
T 1qqe_A          167 LKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSED--PNFADSRESNFLKSL  244 (292)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC-----------HHHHHHH
T ss_pred             HHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--CCCCCcHHHHHHHHH
Confidence            9999999999999999988764211221     256778888889999999999999987642  321      134455


Q ss_pred             HHHHH--ccCcHHHHHHHHHHHH
Q 021791          232 IHGLC--EKQKWKEACQYFVEMI  252 (307)
Q Consensus       232 i~~~~--~~g~~~~a~~~~~~~~  252 (307)
                      +.++.  ..+++++|+..|+++.
T Consensus       245 ~~~~~~~~~~~~~~A~~~~~~~~  267 (292)
T 1qqe_A          245 IDAVNEGDSEQLSEHCKEFDNFM  267 (292)
T ss_dssp             HHHHHTTCTTTHHHHHHHHTTSS
T ss_pred             HHHHHcCCHHHHHHHHHHhccCC
Confidence            66664  4567889998887765

>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2

Probab=99.28  E-value=1.2e-09  Score=88.84  Aligned_cols=239  Identities=8%  Similarity=0.001  Sum_probs=169.8

Q ss_pred             HHHHHHHHHHhcCchhhHHHHHHHHHhcCC-CCc----HHHHHHHHHHHHhhCCCCcchhhHHHHHHHHHHHHHHHhc--
Q 021791            6 MYTSLIYGWCKINRIDMAERFLGEMIERGV-EPN----VVTYNVLLNGVCRRASLHPNERFEKTIRNAEKVFDEMRVR--   78 (307)
Q Consensus         6 ~~~~li~~~~~~g~~~~a~~~~~~~~~~~~-~p~----~~~~~~ll~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~--   78 (307)
                      +++.+...+...|++++|.+.+++...... .++    ..++..+...+..          .|++++|...+++..+.  
T Consensus        55 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~----------~G~~~~A~~~~~~al~~~~  124 (373)
T 1hz4_A           55 ATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEILFA----------QGFLQTAWETQEKAFQLIN  124 (373)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH----------TTCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHH----------CCCHHHHHHHHHHHHHHHH
Confidence            567778889999999999999998875311 111    2234556666677          77788888888877653  


Q ss_pred             --CCC--C-CHHHHHHHHHHHHhcCCchhHHHHHHHHHHcCCCC----chhhHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 021791           79 --GIE--P-DVTSFSIVLHVYSRAHKPQLSLDKLNFMKEKGICP----TVATYTSVVKCLCSCGRIEDAEELLGEMVRNG  149 (307)
Q Consensus        79 --~~~--~-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~----~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~  149 (307)
                        +..  | ....+..+...+...|++++|...+++..+.....    ...++..+...+...|++++|...+++.....
T Consensus       125 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~  204 (373)
T 1hz4_A          125 EQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLL  204 (373)
T ss_dssp             HTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred             HhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence              222  2 34466778889999999999999999887653221    23567788889999999999999999887542


Q ss_pred             CCCCH-hhHH-----HHHHHHhcCCChhHHHHHHHHHhhcCCCC--ccHHHHHHHHHHHHhcCcHHHHHHHHHHHhhC--
Q 021791          150 VSPSA-ETYN-----CFFKEYRGRKDANGAMKLYRQMKEDDLCV--PNIHTYNILIGMFMALNRMDMVREIWNHVKGS--  219 (307)
Q Consensus       150 ~~~~~-~~~~-----~l~~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--  219 (307)
                      ..++. ..+.     ..+..+...|++++|...+++........  .....+..+...+...|++++|...++.....  
T Consensus       205 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~  284 (373)
T 1hz4_A          205 GNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENAR  284 (373)
T ss_dssp             TTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred             hccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Confidence            12111 1221     23344779999999999999987654211  11335677888999999999999999887542  


Q ss_pred             --CCCCCH-HhHHHHHHHHHccCcHHHHHHHHHHHHHc
Q 021791          220 --ELGLDL-DSYTMLIHGLCEKQKWKEACQYFVEMIEK  254 (307)
Q Consensus       220 --~~~~~~-~~~~~li~~~~~~g~~~~a~~~~~~~~~~  254 (307)
                        +..++. ..+..+..++...|+.++|...+++....
T Consensus       285 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~  322 (373)
T 1hz4_A          285 SLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKL  322 (373)
T ss_dssp             HTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred             hCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence              211122 25666778888999999999999988654

>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B

Probab=99.28  E-value=1.3e-09  Score=84.61  Aligned_cols=184  Identities=7%  Similarity=0.023  Sum_probs=137.5

Q ss_pred             HHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCchhHHHHHHHHHHcCC-CCchhhHHHHHHHHHhcCChHHHHHHHHHHH
Q 021791           68 AEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHKPQLSLDKLNFMKEKGI-CPTVATYTSVVKCLCSCGRIEDAEELLGEMV  146 (307)
Q Consensus        68 a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~  146 (307)
                      ++..|++..+.+ .++..++..+..++...|++++|++++.+....+. .-+...+..++..+.+.|+.+.|.+.+++|.
T Consensus        85 a~~~l~~l~~~~-~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~  163 (310)
T 3mv2_B           85 NIEELENLLKDK-QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYT  163 (310)
T ss_dssp             CCHHHHHTTTTS-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhcC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence            445566655544 45666677889999999999999999999877654 2377788899999999999999999999998


Q ss_pred             hCCCCC-----CHhhHHHHHHHH----hcCCChhHHHHHHHHHhhcCCCCccHHHHHHHHHHHHhcCcHHHHHHHHHHHh
Q 021791          147 RNGVSP-----SAETYNCFFKEY----RGRKDANGAMKLYRQMKEDDLCVPNIHTYNILIGMFMALNRMDMVREIWNHVK  217 (307)
Q Consensus       147 ~~~~~~-----~~~~~~~l~~~~----~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~  217 (307)
                      +.  .|     +..+...+..++    ...++..+|..+|+++...   .|+..+...++.++.+.|++++|.+.++.+.
T Consensus       164 ~~--~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~---~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~  238 (310)
T 3mv2_B          164 NA--IEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQT---FPTWKTQLGLLNLHLQQRNIAEAQGIVELLL  238 (310)
T ss_dssp             HH--SCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTT---SCSHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred             hc--CccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh---CCCcccHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            75  44     245555555552    2344899999999999776   5654444555568999999999999999766


Q ss_pred             hCC---------CCCCHHhHHHHHHHHHccCcHHHHHHHHHHHHHcCCCCcHh
Q 021791          218 GSE---------LGLDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKV  261 (307)
Q Consensus       218 ~~~---------~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~  261 (307)
                      +..         -+-+..+...+|......|+  +|.++++++.+.  .|+..
T Consensus       239 ~~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~--~P~hp  287 (310)
T 3mv2_B          239 SDYYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKL--DHEHA  287 (310)
T ss_dssp             SHHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHT--TCCCH
T ss_pred             HhcccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHh--CCCCh
Confidence            531         02366677566666666776  889999999875  45543

>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}

Probab=99.25  E-value=3.9e-09  Score=78.60  Aligned_cols=178  Identities=10%  Similarity=0.023  Sum_probs=140.8

Q ss_pred             HHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCchhHHHHHHHHHHcCCCCchhhHHHHHHHHHhcC----ChHHHHHH
Q 021791           66 RNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHKPQLSLDKLNFMKEKGICPTVATYTSVVKCLCSCG----RIEDAEEL  141 (307)
Q Consensus        66 ~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~----~~~~a~~~  141 (307)
                      .+|.+.|++..+.|   +...+..+...|...+++++|.+.|++..+.|   +...+..+...|.. +    ++++|...
T Consensus         3 ~eA~~~~~~aa~~g---~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~   75 (212)
T 3rjv_A            3 TEPGSQYQQQAEAG---DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQL   75 (212)
T ss_dssp             -CTTHHHHHHHHTT---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHH
T ss_pred             chHHHHHHHHHHCC---CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHH
Confidence            35677788877765   77788888888989999999999999998875   66777788888887 6    89999999


Q ss_pred             HHHHHhCCCCCCHhhHHHHHHHHhc----CCChhHHHHHHHHHhhcCCCC-ccHHHHHHHHHHHHh----cCcHHHHHHH
Q 021791          142 LGEMVRNGVSPSAETYNCFFKEYRG----RKDANGAMKLYRQMKEDDLCV-PNIHTYNILIGMFMA----LNRMDMVREI  212 (307)
Q Consensus       142 ~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~-~~~~~~~~l~~~~~~----~~~~~~a~~~  212 (307)
                      |++..+.|   +...+..+...|..    .+++++|...|++..+.+. . .+...+..|...|..    .++.++|...
T Consensus        76 ~~~A~~~g---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~-~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~  151 (212)
T 3rjv_A           76 AEKAVEAG---SKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSE-SDAAVDAQMLLGLIYASGVHGPEDDVKASEY  151 (212)
T ss_dssp             HHHHHHTT---CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTT-SHHHHHHHHHHHHHHHHTSSSSCCHHHHHHH
T ss_pred             HHHHHHCC---CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCC-CcchHHHHHHHHHHHHcCCCCCCCHHHHHHH
Confidence            99988764   66777788888877    8899999999999988752 1 136788888888888    7889999999


Q ss_pred             HHHHhhCCCCCCHHhHHHHHHHHHcc-C-----cHHHHHHHHHHHHHcCC
Q 021791          213 WNHVKGSELGLDLDSYTMLIHGLCEK-Q-----KWKEACQYFVEMIEKGL  256 (307)
Q Consensus       213 ~~~~~~~~~~~~~~~~~~li~~~~~~-g-----~~~~a~~~~~~~~~~~~  256 (307)
                      ++.....  ..+...+..+...|... |     ++++|...|++..+.|.
T Consensus       152 ~~~A~~~--~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g~  199 (212)
T 3rjv_A          152 FKGSSSL--SRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEGF  199 (212)
T ss_dssp             HHHHHHT--SCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHTC
T ss_pred             HHHHHHc--CCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcCC
Confidence            9998876  22555677777777543 2     88999999999888874

>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}

Probab=99.24  E-value=2.2e-09  Score=82.72  Aligned_cols=172  Identities=9%  Similarity=-0.046  Sum_probs=136.1

Q ss_pred             CchhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCC---HhhHHHHHHHHhcCCChhHHHHHHHHHhhcCCC-CccHHH
Q 021791          117 PTVATYTSVVKCLCSCGRIEDAEELLGEMVRNGVSPS---AETYNCFFKEYRGRKDANGAMKLYRQMKEDDLC-VPNIHT  192 (307)
Q Consensus       117 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~  192 (307)
                      .+...+..+...+.+.|++++|...|+++...... +   ...+..+..+|...|++++|...|++......- +.....
T Consensus        13 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~-~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a   91 (261)
T 3qky_A           13 SSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRT-HEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQA   91 (261)
T ss_dssp             SSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSC-STTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHH
T ss_pred             CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCC-CcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHH
Confidence            35667778888999999999999999999986433 3   667888999999999999999999999987421 223567


Q ss_pred             HHHHHHHHHh--------cCcHHHHHHHHHHHhhCCCCCCHHhH-----------------HHHHHHHHccCcHHHHHHH
Q 021791          193 YNILIGMFMA--------LNRMDMVREIWNHVKGSELGLDLDSY-----------------TMLIHGLCEKQKWKEACQY  247 (307)
Q Consensus       193 ~~~l~~~~~~--------~~~~~~a~~~~~~~~~~~~~~~~~~~-----------------~~li~~~~~~g~~~~a~~~  247 (307)
                      +..+..++..        .|++++|...|+.+...... +....                 ..+...|...|++++|+..
T Consensus        92 ~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~-~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~  170 (261)
T 3qky_A           92 EYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPN-HELVDDATQKIRELRAKLARKQYEAARLYERRELYEAAAVT  170 (261)
T ss_dssp             HHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTT-CTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             HHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHCcC-chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHH
Confidence            7788888888        99999999999999876322 22333                 4567889999999999999


Q ss_pred             HHHHHHcCCC--CcHhhHHHHHHHHhhc----------hhHHHHHHHHHHhhhcC
Q 021791          248 FVEMIEKGLL--PQKVTFETLYRGLIQS----------DMLRTWRRLKKKLDEES  290 (307)
Q Consensus       248 ~~~~~~~~~~--p~~~~~~~l~~~~~~~----------g~~~~a~~~~~~~~~~~  290 (307)
                      |+++++....  .....+..+..++...          |++++|...++++.+..
T Consensus       171 ~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~  225 (261)
T 3qky_A          171 YEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIF  225 (261)
T ss_dssp             HHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHC
Confidence            9999976311  1234677777888766          99999999999987654

>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}

Probab=99.23  E-value=2.7e-08  Score=77.82  Aligned_cols=223  Identities=10%  Similarity=0.059  Sum_probs=163.6

Q ss_pred             HhcCc-hhhHHHHHHHHHhcCCCC-cHHHHHHHHHHHHhhCCCCcchhhHH--HHHHHHHHHHHHHhcCCCCCHHHHHHH
Q 021791           15 CKINR-IDMAERFLGEMIERGVEP-NVVTYNVLLNGVCRRASLHPNERFEK--TIRNAEKVFDEMRVRGIEPDVTSFSIV   90 (307)
Q Consensus        15 ~~~g~-~~~a~~~~~~~~~~~~~p-~~~~~~~ll~~~~~~~~~~~~~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~l   90 (307)
                      .+.|. .++|+++++.++..  .| +...|+.--..+..          .+  +++++++.++.+..... -+..+|+.-
T Consensus        43 ~~~~e~s~~aL~~t~~~L~~--nP~~~taWn~R~~~L~~----------l~~~~~~eeL~~~~~~L~~nP-k~y~aW~~R  109 (306)
T 3dra_A           43 MKAEEYSERALHITELGINE--LASHYTIWIYRFNILKN----------LPNRNLYDELDWCEEIALDNE-KNYQIWNYR  109 (306)
T ss_dssp             HHTTCCSHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHT----------CTTSCHHHHHHHHHHHHHHCT-TCCHHHHHH
T ss_pred             HHcCCCCHHHHHHHHHHHHH--CcHHHHHHHHHHHHHHH----------cccccHHHHHHHHHHHHHHCc-ccHHHHHHH
Confidence            34444 46899999998876  34 44567776666666          44  78889999988887743 355566655


Q ss_pred             HHHH----Hhc---CCchhHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCChH--HHHHHHHHHHhCCCCCCHhhHHHHH
Q 021791           91 LHVY----SRA---HKPQLSLDKLNFMKEKGICPTVATYTSVVKCLCSCGRIE--DAEELLGEMVRNGVSPSAETYNCFF  161 (307)
Q Consensus        91 l~~~----~~~---~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~--~a~~~~~~~~~~~~~~~~~~~~~l~  161 (307)
                      -..+    ...   +++++++++++.+.+...+ +..+|+.-...+.+.|.++  ++++.++++.+.++. |...|+.-.
T Consensus       110 ~~iL~~~~~~l~~~~~~~~EL~~~~~~l~~~pk-ny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~~-N~sAW~~R~  187 (306)
T 3dra_A          110 QLIIGQIMELNNNDFDPYREFDILEAMLSSDPK-NHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDLK-NNSAWSHRF  187 (306)
T ss_dssp             HHHHHHHHHHTTTCCCTHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCTT-CHHHHHHHH
T ss_pred             HHHHHHHHHhccccCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCCC-CHHHHHHHH
Confidence            5555    444   6788899999998887654 7778887777778888887  888899998887665 777777666


Q ss_pred             HHHhcCCC------hhHHHHHHHHHhhcCCCCccHHHHHHHHHHHHhcCcHHH-HHHHHHHHhhCC--CCCCHHhHHHHH
Q 021791          162 KEYRGRKD------ANGAMKLYRQMKEDDLCVPNIHTYNILIGMFMALNRMDM-VREIWNHVKGSE--LGLDLDSYTMLI  232 (307)
Q Consensus       162 ~~~~~~~~------~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~-a~~~~~~~~~~~--~~~~~~~~~~li  232 (307)
                      ......+.      ++++++.+.......  +-|...|+.+-..+.+.|+... +..+...+...+  -..+...+..+.
T Consensus       188 ~ll~~l~~~~~~~~~~eEl~~~~~aI~~~--p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la  265 (306)
T 3dra_A          188 FLLFSKKHLATDNTIDEELNYVKDKIVKC--PQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLA  265 (306)
T ss_dssp             HHHHSSGGGCCHHHHHHHHHHHHHHHHHC--SSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHH
T ss_pred             HHHHhccccchhhhHHHHHHHHHHHHHhC--CCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHH
Confidence            66666665      788888888888776  6788888888888878777443 445666655432  123677888888


Q ss_pred             HHHHccCcHHHHHHHHHHHHHc
Q 021791          233 HGLCEKQKWKEACQYFVEMIEK  254 (307)
Q Consensus       233 ~~~~~~g~~~~a~~~~~~~~~~  254 (307)
                      .+|.+.|+.++|.++++.+.+.
T Consensus       266 ~~~~~~~~~~~A~~~~~~l~~~  287 (306)
T 3dra_A          266 KIYTQQKKYNESRTVYDLLKSK  287 (306)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHT
T ss_pred             HHHHccCCHHHHHHHHHHHHhc
Confidence            8888888999999999988764

>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}

Probab=99.23  E-value=2.4e-10  Score=100.19  Aligned_cols=184  Identities=14%  Similarity=0.030  Sum_probs=145.2

Q ss_pred             HhcCCchhHHHHHHHHH--------HcCCCCchhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHhc
Q 021791           95 SRAHKPQLSLDKLNFMK--------EKGICPTVATYTSVVKCLCSCGRIEDAEELLGEMVRNGVSPSAETYNCFFKEYRG  166 (307)
Q Consensus        95 ~~~~~~~~a~~~~~~~~--------~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~  166 (307)
                      ...|++++|++.+++..        +.. +.+...+..+...+...|++++|...|++..+.+.. +...|..+..++..
T Consensus       402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~  479 (681)
T 2pzi_A          402 TVLSQPVQTLDSLRAARHGALDADGVDF-SESVELPLMEVRALLDLGDVAKATRKLDDLAERVGW-RWRLVWYRAVAELL  479 (681)
T ss_dssp             TTTCCHHHHHHHHHHHHTC-------CC-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHH
T ss_pred             ccccCHHHHHHHHHHhhhhccccccccc-ccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCcc-hHHHHHHHHHHHHH
Confidence            67889999999999887        432 336678888889999999999999999998876543 67888888899999


Q ss_pred             CCChhHHHHHHHHHhhcCCCCccHHHHHHHHHHHHhcCcHHHHHHHHHHHhhCCCCCCHHhHHHHHHHHHccCcHHHHHH
Q 021791          167 RKDANGAMKLYRQMKEDDLCVPNIHTYNILIGMFMALNRMDMVREIWNHVKGSELGLDLDSYTMLIHGLCEKQKWKEACQ  246 (307)
Q Consensus       167 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~  246 (307)
                      .|++++|...|++..+..  +.+...+..+..++.+.|++++ .+.+++..+.+.. +...|..+..++...|++++|+.
T Consensus       480 ~g~~~~A~~~~~~al~l~--P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~P~-~~~a~~~lg~~~~~~g~~~~A~~  555 (681)
T 2pzi_A          480 TGDYDSATKHFTEVLDTF--PGELAPKLALAATAELAGNTDE-HKFYQTVWSTNDG-VISAAFGLARARSAEGDRVGAVR  555 (681)
T ss_dssp             HTCHHHHHHHHHHHHHHS--TTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             cCCHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhCCc-hHHHHHHHHHHHHHcCCHHHHHH
Confidence            999999999999998876  5677888899999999999999 9999998876433 67788899999999999999999


Q ss_pred             HHHHHHHcCCCCc-HhhHHHHHHHHhhch--------hHHHHHHHHHHh
Q 021791          247 YFVEMIEKGLLPQ-KVTFETLYRGLIQSD--------MLRTWRRLKKKL  286 (307)
Q Consensus       247 ~~~~~~~~~~~p~-~~~~~~l~~~~~~~g--------~~~~a~~~~~~~  286 (307)
                      .|++.++.  .|+ ...+..+..++...|        ++++|.+.+..+
T Consensus       556 ~~~~al~l--~P~~~~a~~~~~~~~~~~~~~~~~~~~~~~~A~~~l~~~  602 (681)
T 2pzi_A          556 TLDEVPPT--SRHFTTARLTSAVTLLSGRSTSEVTEEQIRDAARRVEAL  602 (681)
T ss_dssp             HHHTSCTT--STTHHHHHHHHHHHTC-------CCHHHHHHHHHHHHTS
T ss_pred             HHHhhccc--CcccHHHHHHHHHHHHccCCCCCCCHHHHHHHHHHHhhC
Confidence            99988754  454 456666777765533        455555555444

>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}

Probab=99.22  E-value=1.9e-10  Score=100.80  Aligned_cols=172  Identities=9%  Similarity=-0.087  Sum_probs=144.0

Q ss_pred             HHHHHHHHHHHHHHH--------hcCCCCCHHHHHHHHHHHHhcCCchhHHHHHHHHHHcCCCCchhhHHHHHHHHHhcC
Q 021791           62 EKTIRNAEKVFDEMR--------VRGIEPDVTSFSIVLHVYSRAHKPQLSLDKLNFMKEKGICPTVATYTSVVKCLCSCG  133 (307)
Q Consensus        62 ~~~~~~a~~~~~~~~--------~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~  133 (307)
                      .+++++|++.+++..        +. .+.+...+..+..++...|++++|.+.|++..+.... +...|..+..+|...|
T Consensus       404 ~~~~~~A~~~~~~al~~~~~~~~~~-~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~g  481 (681)
T 2pzi_A          404 LSQPVQTLDSLRAARHGALDADGVD-FSESVELPLMEVRALLDLGDVAKATRKLDDLAERVGW-RWRLVWYRAVAELLTG  481 (681)
T ss_dssp             TCCHHHHHHHHHHHHTC-------C-CTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHHT
T ss_pred             ccCHHHHHHHHHHhhhhcccccccc-cccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCcc-hHHHHHHHHHHHHHcC
Confidence            577899999999988        43 2446678889999999999999999999999887543 7788999999999999


Q ss_pred             ChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHhcCCChhHHHHHHHHHhhcCCCCccHHHHHHHHHHHHhcCcHHHHHHHH
Q 021791          134 RIEDAEELLGEMVRNGVSPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDDLCVPNIHTYNILIGMFMALNRMDMVREIW  213 (307)
Q Consensus       134 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~  213 (307)
                      ++++|...|++..+.... +...+..+..++.+.|++++ ...|++..+.+  +.+...+..+..++.+.|++++|.+.+
T Consensus       482 ~~~~A~~~~~~al~l~P~-~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~--P~~~~a~~~lg~~~~~~g~~~~A~~~~  557 (681)
T 2pzi_A          482 DYDSATKHFTEVLDTFPG-ELAPKLALAATAELAGNTDE-HKFYQTVWSTN--DGVISAAFGLARARSAEGDRVGAVRTL  557 (681)
T ss_dssp             CHHHHHHHHHHHHHHSTT-CSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHcCChHH-HHHHHHHHHhC--CchHHHHHHHHHHHHHcCCHHHHHHHH
Confidence            999999999999987544 67888899999999999999 99999999876  667889999999999999999999999


Q ss_pred             HHHhhCCCCCCHHhHHHHHHHHHccCc
Q 021791          214 NHVKGSELGLDLDSYTMLIHGLCEKQK  240 (307)
Q Consensus       214 ~~~~~~~~~~~~~~~~~li~~~~~~g~  240 (307)
                      +++.+.+.. +...+..+..++...++
T Consensus       558 ~~al~l~P~-~~~a~~~~~~~~~~~~~  583 (681)
T 2pzi_A          558 DEVPPTSRH-FTTARLTSAVTLLSGRS  583 (681)
T ss_dssp             HTSCTTSTT-HHHHHHHHHHHTC----
T ss_pred             HhhcccCcc-cHHHHHHHHHHHHccCC
Confidence            999876422 45677777777766554

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}

Probab=99.21  E-value=1.5e-09  Score=80.68  Aligned_cols=166  Identities=10%  Similarity=0.054  Sum_probs=127.6

Q ss_pred             hhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHhhHHH----------------HHHHHhcCCChhHHHHHHHHHhhc
Q 021791          120 ATYTSVVKCLCSCGRIEDAEELLGEMVRNGVSPSAETYNC----------------FFKEYRGRKDANGAMKLYRQMKED  183 (307)
Q Consensus       120 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~----------------l~~~~~~~~~~~~a~~~~~~~~~~  183 (307)
                      ..+......+...|++++|...|++.....+. +...|..                +..+|.+.|++++|...|++..+.
T Consensus         5 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~   83 (208)
T 3urz_A            5 DEMLQKVSAAIEAGQNGQAVSYFRQTIALNID-RTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQK   83 (208)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCHH-HHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-ChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence            34445566788999999999999999886432 4556666                888999999999999999999988


Q ss_pred             CCCCccHHHHHHHHHHHHhcCcHHHHHHHHHHHhhCCCCCCHHhHHHHHHHHHccCc--HHHHHHHHHHHHHcCCCCcHh
Q 021791          184 DLCVPNIHTYNILIGMFMALNRMDMVREIWNHVKGSELGLDLDSYTMLIHGLCEKQK--WKEACQYFVEMIEKGLLPQKV  261 (307)
Q Consensus       184 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~--~~~a~~~~~~~~~~~~~p~~~  261 (307)
                      .  +.+...+..+...+...|++++|...|+++...... +..++..+..+|...|+  .+.+...++....  ..|...
T Consensus        84 ~--p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~  158 (208)
T 3urz_A           84 A--PNNVDCLEACAEMQVCRGQEKDALRMYEKILQLEAD-NLAANIFLGNYYYLTAEQEKKKLETDYKKLSS--PTKMQY  158 (208)
T ss_dssp             C--TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHHHHHHHHHHC---C--CCHHHH
T ss_pred             C--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhC--CCchhH
Confidence            6  678899999999999999999999999999987533 67888888888766554  4455666665542  233333


Q ss_pred             hHHHHHHHHhhchhHHHHHHHHHHhhhcCC
Q 021791          262 TFETLYRGLIQSDMLRTWRRLKKKLDEESI  291 (307)
Q Consensus       262 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~  291 (307)
                      .+.....++...|++++|...+++..+...
T Consensus       159 a~~~~g~~~~~~~~~~~A~~~~~~al~l~P  188 (208)
T 3urz_A          159 ARYRDGLSKLFTTRYEKARNSLQKVILRFP  188 (208)
T ss_dssp             HHHHHHHHHHHHHTHHHHHHHHHHHTTTSC
T ss_pred             HHHHHHHHHHHccCHHHHHHHHHHHHHhCC
Confidence            444456667788999999999999876543

>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A

Probab=99.21  E-value=5.7e-09  Score=78.50  Aligned_cols=188  Identities=7%  Similarity=0.030  Sum_probs=120.5

Q ss_pred             CHHHHHHHHHHHHhcCCchhHHHHHHHHHHcCCCC--chhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCH--hhHH
Q 021791           83 DVTSFSIVLHVYSRAHKPQLSLDKLNFMKEKGICP--TVATYTSVVKCLCSCGRIEDAEELLGEMVRNGVSPSA--ETYN  158 (307)
Q Consensus        83 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~  158 (307)
                      +...+..+...+...|++++|...|+.+.+.....  ....+..+..+|.+.|++++|...|+++.+..+....  ..+.
T Consensus         3 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~   82 (225)
T 2yhc_A            3 PPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMY   82 (225)
T ss_dssp             CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHH
T ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHH
Confidence            44556667778888899999999999888763321  1356777888889999999999999988876433111  1344


Q ss_pred             HHHHHHhc------------------CCChhHHHHHHHHHhhcCCCCccHHHHHHHHHHHHhcCcHHHHHHHHHHHhhCC
Q 021791          159 CFFKEYRG------------------RKDANGAMKLYRQMKEDDLCVPNIHTYNILIGMFMALNRMDMVREIWNHVKGSE  220 (307)
Q Consensus       159 ~l~~~~~~------------------~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~  220 (307)
                      .+..++..                  .|++++|...|+++.+..  +-+...+........          +....    
T Consensus        83 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~--P~~~~a~~a~~~l~~----------~~~~~----  146 (225)
T 2yhc_A           83 MRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGY--PNSQYTTDATKRLVF----------LKDRL----  146 (225)
T ss_dssp             HHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTTC--TTCTTHHHHHHHHHH----------HHHHH----
T ss_pred             HHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHC--cCChhHHHHHHHHHH----------HHHHH----
Confidence            44444443                  355666666666666553  222222211111000          00000    


Q ss_pred             CCCCHHhHHHHHHHHHccCcHHHHHHHHHHHHHcCCCCc----HhhHHHHHHHHhhchhHHHHHHHHHHhhhcCCC
Q 021791          221 LGLDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQ----KVTFETLYRGLIQSDMLRTWRRLKKKLDEESIT  292 (307)
Q Consensus       221 ~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~  292 (307)
                          ......+...|.+.|++++|+..|+++++..  |+    ...+..+..++.+.|+.++|.+.++.+...+..
T Consensus       147 ----~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~--p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~~  216 (225)
T 2yhc_A          147 ----AKYEYSVAEYYTERGAWVAVVNRVEGMLRDY--PDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANSSN  216 (225)
T ss_dssp             ----HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS--TTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCSC
T ss_pred             ----HHHHHHHHHHHHHcCcHHHHHHHHHHHHHHC--cCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCC
Confidence                0011345667888999999999999998762  33    246778888999999999999999988766543

>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*

Probab=99.20  E-value=8.2e-10  Score=86.39  Aligned_cols=163  Identities=11%  Similarity=-0.032  Sum_probs=81.3

Q ss_pred             chhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHhcCCChhHHHHHHHHHhhcCCCCccHHH-HHHH
Q 021791          118 TVATYTSVVKCLCSCGRIEDAEELLGEMVRNGVSPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDDLCVPNIHT-YNIL  196 (307)
Q Consensus       118 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~-~~~l  196 (307)
                      +...+..+...+...|++++|...|++.....+. +...+..+...+...|++++|...++++....   |+... ....
T Consensus       116 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~---p~~~~~~~~~  191 (287)
T 3qou_A          116 EEELXAQQAMQLMQESNYTDALPLLXDAWQLSNQ-NGEIGLLLAETLIALNRSEDAEAVLXTIPLQD---QDTRYQGLVA  191 (287)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTS-CHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGG---CSHHHHHHHH
T ss_pred             chhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCc-chhHHHHHHHHHHHCCCHHHHHHHHHhCchhh---cchHHHHHHH
Confidence            3344445555555555555555555555554322 44455555555555555555555555554442   22221 1122


Q ss_pred             HHHHHhcCcHHHHHHHHHHHhhCCCCCCHHhHHHHHHHHHccCcHHHHHHHHHHHHHcCCC-CcHhhHHHHHHHHhhchh
Q 021791          197 IGMFMALNRMDMVREIWNHVKGSELGLDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLL-PQKVTFETLYRGLIQSDM  275 (307)
Q Consensus       197 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~-p~~~~~~~l~~~~~~~g~  275 (307)
                      ...+...++.+.|...+++...... .+...+..+...+...|++++|...|.++++..-. .+...+..+...+...|+
T Consensus       192 ~~~l~~~~~~~~a~~~l~~al~~~P-~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g~  270 (287)
T 3qou_A          192 QIELLXQAADTPEIQQLQQQVAENP-EDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAALGT  270 (287)
T ss_dssp             HHHHHHHHTSCHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHCT
T ss_pred             HHHHHhhcccCccHHHHHHHHhcCC-ccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHcCC
Confidence            2223444455555555555554422 24555555555555566666666666655554211 113345555555555555


Q ss_pred             HHHHHHHHHH
Q 021791          276 LRTWRRLKKK  285 (307)
Q Consensus       276 ~~~a~~~~~~  285 (307)
                      .++|...+++
T Consensus       271 ~~~a~~~~r~  280 (287)
T 3qou_A          271 GDALASXYRR  280 (287)
T ss_dssp             TCHHHHHHHH
T ss_pred             CCcHHHHHHH
Confidence            5555555544

>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*

Probab=99.19  E-value=1.2e-10  Score=81.79  Aligned_cols=138  Identities=7%  Similarity=-0.100  Sum_probs=73.2

Q ss_pred             HHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCchhHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCChHHHHHH
Q 021791           62 EKTIRNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHKPQLSLDKLNFMKEKGICPTVATYTSVVKCLCSCGRIEDAEEL  141 (307)
Q Consensus        62 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~  141 (307)
                      .+++++|+..+....... +-+...+..+...|.+.|++++|++.|++..+.... +..+|..+..+|.+.|++++|...
T Consensus        10 ~~~~e~ai~~~~~a~~~~-p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~~~~~~A~~~   87 (150)
T 4ga2_A           10 KADVERYIASVQGSTPSP-RQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQER-DPKAHRFLGLLYELEENTDKAVEC   87 (150)
T ss_dssp             HHHHHHHHHHHHHHSCSH-HHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             cChHHHHHHHHHHhcccC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCchHHHHHH
Confidence            455666666665554331 112334445555666666666666666666555332 555566666666666666666666


Q ss_pred             HHHHHhCCCCCCHhhHHHHHHHHhcCCChhHHHHH-HHHHhhcCCCCccHHHHHHHHHHHHhcC
Q 021791          142 LGEMVRNGVSPSAETYNCFFKEYRGRKDANGAMKL-YRQMKEDDLCVPNIHTYNILIGMFMALN  204 (307)
Q Consensus       142 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~-~~~~~~~~~~~~~~~~~~~l~~~~~~~~  204 (307)
                      |++..+..+. +..++..+...|.+.|+.+++... +++..+..  |.+..+|......+...|
T Consensus        88 ~~~al~~~p~-~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~--P~~~~~~~l~~~ll~~~G  148 (150)
T 4ga2_A           88 YRRSVELNPT-QKDLVLKIAELLCKNDVTDGRAKYWVERAAKLF--PGSPAVYKLKEQLLDCEG  148 (150)
T ss_dssp             HHHHHHHCTT-CHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHS--TTCHHHHHHHHHHHHTCC
T ss_pred             HHHHHHhCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhC--cCCHHHHHHHHHHHHHhC
Confidence            6666554332 455555555566666665544433 34444443  344455554444444443

>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*

Probab=99.18  E-value=1.3e-09  Score=93.71  Aligned_cols=164  Identities=8%  Similarity=-0.020  Sum_probs=119.7

Q ss_pred             HHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCchhHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCChHHHHHH
Q 021791           62 EKTIRNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHKPQLSLDKLNFMKEKGICPTVATYTSVVKCLCSCGRIEDAEEL  141 (307)
Q Consensus        62 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~  141 (307)
                      .+++++|.+.+++..+.. +.+...+..+...+...|++++|.+.+++..+.... +...+..+...|...|++++|...
T Consensus         2 ~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~   79 (568)
T 2vsy_A            2 TADGPRELLQLRAAVRHR-PQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPG-HPEAVARLGRVRWTQQRHAEAAVL   79 (568)
T ss_dssp             --------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTT-CHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             CccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHH
Confidence            578899999999887763 336788889999999999999999999999887533 677888899999999999999999


Q ss_pred             HHHHHhCCCCCCHhhHHHHHHHHhcCCChhHHHHHHHHHhhcCCCCccHHHHHHHHHHHHhc---CcHHHHHHHHHHHhh
Q 021791          142 LGEMVRNGVSPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDDLCVPNIHTYNILIGMFMAL---NRMDMVREIWNHVKG  218 (307)
Q Consensus       142 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---~~~~~a~~~~~~~~~  218 (307)
                      +++..+.... +...+..+...+...|++++|...+++..+..  +.+...+..+...+...   |+.++|.+.+++..+
T Consensus        80 ~~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~  156 (568)
T 2vsy_A           80 LQQASDAAPE-HPGIALWLGHALEDAGQAEAAAAAYTRAHQLL--PEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVA  156 (568)
T ss_dssp             HHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHH
T ss_pred             HHHHHhcCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHh
Confidence            9998886543 67788889999999999999999999988875  56678888899999999   999999999999887


Q ss_pred             CCCCCCHHhHHHH
Q 021791          219 SELGLDLDSYTML  231 (307)
Q Consensus       219 ~~~~~~~~~~~~l  231 (307)
                      .+.. +...|..+
T Consensus       157 ~~p~-~~~~~~~l  168 (568)
T 2vsy_A          157 QGVG-AVEPFAFL  168 (568)
T ss_dssp             HTCC-CSCHHHHT
T ss_pred             cCCc-ccChHHHh
Confidence            6433 33344433

>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}

Probab=99.18  E-value=4.9e-10  Score=80.92  Aligned_cols=160  Identities=12%  Similarity=0.060  Sum_probs=78.9

Q ss_pred             HHHHHHHHhcCCchhHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHhhHHHHHHH-Hhc
Q 021791           88 SIVLHVYSRAHKPQLSLDKLNFMKEKGICPTVATYTSVVKCLCSCGRIEDAEELLGEMVRNGVSPSAETYNCFFKE-YRG  166 (307)
Q Consensus        88 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~-~~~  166 (307)
                      ..+...+...|++++|...++...+.... +...+..+...+...|++++|...+++......  +...+...... +..
T Consensus        10 ~~~a~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~p--~~~~~~~~~~~~~~~   86 (176)
T 2r5s_A           10 LKQVSELLQQGEHAQALNVIQTLSDELQS-RGDVKLAKADCLLETKQFELAQELLATIPLEYQ--DNSYKSLIAKLELHQ   86 (176)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHTSCHHHHT-SHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGGC--CHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHHCCC-cHHHHHHHHHHHHHCCCHHHHHHHHHHhhhccC--ChHHHHHHHHHHHHh
Confidence            34444555566666666666555444221 445555566666666666666666665544322  22222211111 111


Q ss_pred             CCChhHHHHHHHHHhhcCCCCccHHHHHHHHHHHHhcCcHHHHHHHHHHHhhCCCCC-CHHhHHHHHHHHHccCcHHHHH
Q 021791          167 RKDANGAMKLYRQMKEDDLCVPNIHTYNILIGMFMALNRMDMVREIWNHVKGSELGL-DLDSYTMLIHGLCEKQKWKEAC  245 (307)
Q Consensus       167 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~a~  245 (307)
                      .+...++...+++.....  +.+...+..+...+...|++++|...++.+......+ +...+..+..++...|+.++|.
T Consensus        87 ~~~~~~a~~~~~~al~~~--P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~  164 (176)
T 2r5s_A           87 QAAESPELKRLEQELAAN--PDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIA  164 (176)
T ss_dssp             HHTSCHHHHHHHHHHHHS--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHH
T ss_pred             hcccchHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHH
Confidence            122223455555555443  3345555555555555666666666655555543221 2334555555555555555555


Q ss_pred             HHHHHHH
Q 021791          246 QYFVEMI  252 (307)
Q Consensus       246 ~~~~~~~  252 (307)
                      ..|++.+
T Consensus       165 ~~y~~al  171 (176)
T 2r5s_A          165 SKYRRQL  171 (176)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            5555443

>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*

Probab=99.17  E-value=1.8e-09  Score=84.42  Aligned_cols=168  Identities=10%  Similarity=-0.033  Sum_probs=139.5

Q ss_pred             CCCHHHHHHHHHHHHhcCCchhHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHhhHH-H
Q 021791           81 EPDVTSFSIVLHVYSRAHKPQLSLDKLNFMKEKGICPTVATYTSVVKCLCSCGRIEDAEELLGEMVRNGVSPSAETYN-C  159 (307)
Q Consensus        81 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~-~  159 (307)
                      +.+...+..+...+...|++++|...|++..+.... +...+..+...+...|++++|...++++....  |+..... .
T Consensus       114 p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~--p~~~~~~~~  190 (287)
T 3qou_A          114 PREEELXAQQAMQLMQESNYTDALPLLXDAWQLSNQ-NGEIGLLLAETLIALNRSEDAEAVLXTIPLQD--QDTRYQGLV  190 (287)
T ss_dssp             CCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTS-CHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGG--CSHHHHHHH
T ss_pred             CCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCc-chhHHHHHHHHHHHCCCHHHHHHHHHhCchhh--cchHHHHHH
Confidence            556677888889999999999999999999887543 77889999999999999999999999987754  4443332 2


Q ss_pred             HHHHHhcCCChhHHHHHHHHHhhcCCCCccHHHHHHHHHHHHhcCcHHHHHHHHHHHhhCCCCC-CHHhHHHHHHHHHcc
Q 021791          160 FFKEYRGRKDANGAMKLYRQMKEDDLCVPNIHTYNILIGMFMALNRMDMVREIWNHVKGSELGL-DLDSYTMLIHGLCEK  238 (307)
Q Consensus       160 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~li~~~~~~  238 (307)
                      ....+...++.++|...+++.....  +.+...+..+...+...|++++|...+.++....... +...+..+...+...
T Consensus       191 ~~~~l~~~~~~~~a~~~l~~al~~~--P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~  268 (287)
T 3qou_A          191 AQIELLXQAADTPEIQQLQQQVAEN--PEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAAL  268 (287)
T ss_dssp             HHHHHHHHHTSCHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHH
T ss_pred             HHHHHHhhcccCccHHHHHHHHhcC--CccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHc
Confidence            3334667788888999999998876  6788999999999999999999999999999864321 266899999999999


Q ss_pred             CcHHHHHHHHHHHHH
Q 021791          239 QKWKEACQYFVEMIE  253 (307)
Q Consensus       239 g~~~~a~~~~~~~~~  253 (307)
                      |+.++|...+++.+.
T Consensus       269 g~~~~a~~~~r~al~  283 (287)
T 3qou_A          269 GTGDALASXYRRQLY  283 (287)
T ss_dssp             CTTCHHHHHHHHHHH
T ss_pred             CCCCcHHHHHHHHHH
Confidence            999999999987654

>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A

Probab=99.17  E-value=8.6e-09  Score=77.49  Aligned_cols=173  Identities=9%  Similarity=-0.051  Sum_probs=117.8

Q ss_pred             HHHHHHHHHHHHHHHhcCCC-C-CHHHHHHHHHHHHhcCCchhHHHHHHHHHHcCCCCch--hhHHHHHHHHHh------
Q 021791           62 EKTIRNAEKVFDEMRVRGIE-P-DVTSFSIVLHVYSRAHKPQLSLDKLNFMKEKGICPTV--ATYTSVVKCLCS------  131 (307)
Q Consensus        62 ~~~~~~a~~~~~~~~~~~~~-~-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~ll~~~~~------  131 (307)
                      .|++++|+..|+++.+.... | ....+..+..++.+.|++++|+..|+.+.+.......  ..+..+..++..      
T Consensus        17 ~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~~~g~~~~~~~~~~~   96 (225)
T 2yhc_A           17 DGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMYMRGLTNMALDDSAL   96 (225)
T ss_dssp             HTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHHC---
T ss_pred             cCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHHHHHHHHHhhhhhhh
Confidence            67899999999999886322 1 2357888899999999999999999999887433111  245555555554      


Q ss_pred             ------------cCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHhcCCChhHHHHHHHHHhhcCCCCccHHHHHHHHHH
Q 021791          132 ------------CGRIEDAEELLGEMVRNGVSPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDDLCVPNIHTYNILIGM  199 (307)
Q Consensus       132 ------------~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~  199 (307)
                                  .|++++|...|+++.+..+. +...+......          ..+...+         ......+...
T Consensus        97 ~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~-~~~a~~a~~~l----------~~~~~~~---------~~~~~~~a~~  156 (225)
T 2yhc_A           97 QGFFGVDRSDRDPQQARAAFSDFSKLVRGYPN-SQYTTDATKRL----------VFLKDRL---------AKYEYSVAEY  156 (225)
T ss_dssp             -----------CCHHHHHHHHHHHHHHTTCTT-CTTHHHHHHHH----------HHHHHHH---------HHHHHHHHHH
T ss_pred             hhhhccchhhcCcHHHHHHHHHHHHHHHHCcC-ChhHHHHHHHH----------HHHHHHH---------HHHHHHHHHH
Confidence                        57899999999999986432 22233221110          0011111         1122345677


Q ss_pred             HHhcCcHHHHHHHHHHHhhCCCCCC--HHhHHHHHHHHHccCcHHHHHHHHHHHHHc
Q 021791          200 FMALNRMDMVREIWNHVKGSELGLD--LDSYTMLIHGLCEKQKWKEACQYFVEMIEK  254 (307)
Q Consensus       200 ~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~li~~~~~~g~~~~a~~~~~~~~~~  254 (307)
                      +.+.|++++|...++.+.+......  ...+..+..++.+.|++++|...++.+...
T Consensus       157 ~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~  213 (225)
T 2yhc_A          157 YTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAAN  213 (225)
T ss_dssp             HHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHC
T ss_pred             HHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhh
Confidence            8888999999999988887632211  246777888889999999999999888776

>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}

Probab=99.16  E-value=1.8e-08  Score=75.00  Aligned_cols=178  Identities=11%  Similarity=-0.021  Sum_probs=144.9

Q ss_pred             hhHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHhcCC----ChhHHHHH
Q 021791          101 QLSLDKLNFMKEKGICPTVATYTSVVKCLCSCGRIEDAEELLGEMVRNGVSPSAETYNCFFKEYRGRK----DANGAMKL  176 (307)
Q Consensus       101 ~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~----~~~~a~~~  176 (307)
                      .+|++.|++..+.|   +...+..+...|...+++++|...|++..+.|   +...+..+...|.. +    ++++|...
T Consensus         3 ~eA~~~~~~aa~~g---~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~   75 (212)
T 3rjv_A            3 TEPGSQYQQQAEAG---DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQL   75 (212)
T ss_dssp             -CTTHHHHHHHHTT---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHH
T ss_pred             chHHHHHHHHHHCC---CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHH
Confidence            35778888888775   77888899999999999999999999998865   66788888888887 6    89999999


Q ss_pred             HHHHhhcCCCCccHHHHHHHHHHHHh----cCcHHHHHHHHHHHhhCCCC-CCHHhHHHHHHHHHc----cCcHHHHHHH
Q 021791          177 YRQMKEDDLCVPNIHTYNILIGMFMA----LNRMDMVREIWNHVKGSELG-LDLDSYTMLIHGLCE----KQKWKEACQY  247 (307)
Q Consensus       177 ~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~-~~~~~~~~li~~~~~----~g~~~~a~~~  247 (307)
                      |++..+.+    +...+..|...|..    .+++++|.+.++...+.+.. .+...+..|...|..    .+++++|...
T Consensus        76 ~~~A~~~g----~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~  151 (212)
T 3rjv_A           76 AEKAVEAG----SKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEY  151 (212)
T ss_dssp             HHHHHHTT----CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHH
T ss_pred             HHHHHHCC----CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHH
Confidence            99997754    56778888888877    88999999999999987521 026788888888888    8899999999


Q ss_pred             HHHHHHcCCCCcHhhHHHHHHHHhhc-h-----hHHHHHHHHHHhhhcCC
Q 021791          248 FVEMIEKGLLPQKVTFETLYRGLIQS-D-----MLRTWRRLKKKLDEESI  291 (307)
Q Consensus       248 ~~~~~~~~~~p~~~~~~~l~~~~~~~-g-----~~~~a~~~~~~~~~~~~  291 (307)
                      |++..+.  ..+...+..|...|... |     +.++|..++++..+.|.
T Consensus       152 ~~~A~~~--~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g~  199 (212)
T 3rjv_A          152 FKGSSSL--SRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEGF  199 (212)
T ss_dssp             HHHHHHT--SCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHTC
T ss_pred             HHHHHHc--CCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcCC
Confidence            9999887  23444666677777543 3     89999999999877764

>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*

Probab=99.15  E-value=1e-09  Score=76.95  Aligned_cols=146  Identities=8%  Similarity=-0.041  Sum_probs=117.3

Q ss_pred             HHHHHHhcCCchhHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHhcCCC
Q 021791           90 VLHVYSRAHKPQLSLDKLNFMKEKGICPTVATYTSVVKCLCSCGRIEDAEELLGEMVRNGVSPSAETYNCFFKEYRGRKD  169 (307)
Q Consensus        90 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~  169 (307)
                      |...+...|++++|+..++....... -+...+..+...|.+.|++++|.+.|++..+..+. +..+|..+..+|...|+
T Consensus         3 LG~~~~~~~~~e~ai~~~~~a~~~~p-~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~~~   80 (150)
T 4ga2_A            3 LGSMRRSKADVERYIASVQGSTPSPR-QKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQER-DPKAHRFLGLLYELEEN   80 (150)
T ss_dssp             ----CCCHHHHHHHHHHHHHHSCSHH-HHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTC
T ss_pred             hHHHHHHcChHHHHHHHHHHhcccCc-ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCc
Confidence            34455667889999999988766532 24556778999999999999999999999987654 78899999999999999


Q ss_pred             hhHHHHHHHHHhhcCCCCccHHHHHHHHHHHHhcCcHHHHHHH-HHHHhhCCCCCCHHhHHHHHHHHHccCc
Q 021791          170 ANGAMKLYRQMKEDDLCVPNIHTYNILIGMFMALNRMDMVREI-WNHVKGSELGLDLDSYTMLIHGLCEKQK  240 (307)
Q Consensus       170 ~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~-~~~~~~~~~~~~~~~~~~li~~~~~~g~  240 (307)
                      +++|...|++..+..  +.+..++..+...+.+.|+.++|.+. ++...+.... +..+|......+...|+
T Consensus        81 ~~~A~~~~~~al~~~--p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~P~-~~~~~~l~~~ll~~~G~  149 (150)
T 4ga2_A           81 TDKAVECYRRSVELN--PTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLFPG-SPAVYKLKEQLLDCEGE  149 (150)
T ss_dssp             HHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHSTT-CHHHHHHHHHHHHTCCC
T ss_pred             hHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhCcC-CHHHHHHHHHHHHHhCc
Confidence            999999999999886  56788999999999999999876665 5777776432 67778877777777764

>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}

Probab=99.14  E-value=6.5e-09  Score=82.11  Aligned_cols=216  Identities=13%  Similarity=0.068  Sum_probs=153.8

Q ss_pred             HHHHHHHHHHHHHHHhc------CCCCCH----HHHHHHHHHHHhcCCchhHHHHHHHHHHc----CCC-CchhhHHHHH
Q 021791           62 EKTIRNAEKVFDEMRVR------GIEPDV----TSFSIVLHVYSRAHKPQLSLDKLNFMKEK----GIC-PTVATYTSVV  126 (307)
Q Consensus        62 ~~~~~~a~~~~~~~~~~------~~~~~~----~~~~~ll~~~~~~~~~~~a~~~~~~~~~~----~~~-~~~~~~~~ll  126 (307)
                      .+++++|.+++++..+.      +..++.    ..|......|...|++++|...|.+..+.    +-. .-..+|+.+.
T Consensus         4 ~~~~~eA~~~~~~a~k~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg   83 (307)
T 2ifu_A            4 AQKISEAHEHIAKAEKYLKTSFMKWKPDYDSAASEYAKAAVAFKNAKQLEQAKDAYLQEAEAHANNRSLFHAAKAFEQAG   83 (307)
T ss_dssp             HHHHHHHHHHHHHHHHHHCCCSSSCSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             cchHHHHHHHHHHHHHHccccccCCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            67888888888876542      112342    36777788899999999999999887654    211 1145788899


Q ss_pred             HHHHhcCChHHHHHHHHHHHhCC--C-CC--CHhhHHHHHHHHhcCCChhHHHHHHHHHhhcCCC--Cc--cHHHHHHHH
Q 021791          127 KCLCSCGRIEDAEELLGEMVRNG--V-SP--SAETYNCFFKEYRGRKDANGAMKLYRQMKEDDLC--VP--NIHTYNILI  197 (307)
Q Consensus       127 ~~~~~~~~~~~a~~~~~~~~~~~--~-~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--~~--~~~~~~~l~  197 (307)
                      ..|...|++++|...|++.....  . .+  ...++..+...|.. |++++|+..+++.......  .+  ...++..+.
T Consensus        84 ~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg  162 (307)
T 2ifu_A           84 MMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVHLYQQAAAVFENEERLRQAAELIGKAS  162 (307)
T ss_dssp             HHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHH
Confidence            99999999999999999876531  1 11  13577788888988 9999999999988754210  11  146788899


Q ss_pred             HHHHhcCcHHHHHHHHHHHhhC----CCCCC-HHhHHHHHHHHHccCcHHHHHHHHHHHHHcCCCCcH------hhHHHH
Q 021791          198 GMFMALNRMDMVREIWNHVKGS----ELGLD-LDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQK------VTFETL  266 (307)
Q Consensus       198 ~~~~~~~~~~~a~~~~~~~~~~----~~~~~-~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~------~~~~~l  266 (307)
                      ..+...|++++|+..+++....    +..++ ...+..+..++...|++++|...|++.+ .  .|+.      .....+
T Consensus       163 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al-~--~p~~~~~~e~~~l~~l  239 (307)
T 2ifu_A          163 RLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKCVRESY-S--IPGFSGSEDCAALEDL  239 (307)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHT-T--STTSTTSHHHHHHHHH
T ss_pred             HHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHh-C--CCCCCCCHHHHHHHHH
Confidence            9999999999999999988763    11111 2256667777888899999999999998 4  2321      234445


Q ss_pred             HHHHhhchhHHHHHHH
Q 021791          267 YRGLIQSDMLRTWRRL  282 (307)
Q Consensus       267 ~~~~~~~g~~~~a~~~  282 (307)
                      +.++ ..|+.+.+.++
T Consensus       240 ~~~~-~~~d~~~~~~~  254 (307)
T 2ifu_A          240 LQAY-DEQDEEQLLRV  254 (307)
T ss_dssp             HHHH-HTTCHHHHHHH
T ss_pred             HHHH-HhcCHHHHHHH
Confidence            5555 56666666653

>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*

Probab=99.14  E-value=2.6e-09  Score=91.90  Aligned_cols=154  Identities=7%  Similarity=-0.057  Sum_probs=121.0

Q ss_pred             cCCchhHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHhcCCChhHHHHH
Q 021791           97 AHKPQLSLDKLNFMKEKGICPTVATYTSVVKCLCSCGRIEDAEELLGEMVRNGVSPSAETYNCFFKEYRGRKDANGAMKL  176 (307)
Q Consensus        97 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~  176 (307)
                      .|++++|.+.+++..+.... +...+..+...+...|++++|...+++..+.... +...+..+...|...|++++|...
T Consensus         2 ~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~   79 (568)
T 2vsy_A            2 TADGPRELLQLRAAVRHRPQ-DFVAWLMLADAELGMGDTTAGEMAVQRGLALHPG-HPEAVARLGRVRWTQQRHAEAAVL   79 (568)
T ss_dssp             -------------------C-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTT-CHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             CccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHH
Confidence            47889999999998876433 6788999999999999999999999999987543 678899999999999999999999


Q ss_pred             HHHHhhcCCCCccHHHHHHHHHHHHhcCcHHHHHHHHHHHhhCCCCCCHHhHHHHHHHHHcc---CcHHHHHHHHHHHHH
Q 021791          177 YRQMKEDDLCVPNIHTYNILIGMFMALNRMDMVREIWNHVKGSELGLDLDSYTMLIHGLCEK---QKWKEACQYFVEMIE  253 (307)
Q Consensus       177 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~---g~~~~a~~~~~~~~~  253 (307)
                      +++..+..  +.+...+..+..++...|++++|.+.+++..+... .+...+..+..++...   |++++|...+++.++
T Consensus        80 ~~~al~~~--p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~  156 (568)
T 2vsy_A           80 LQQASDAA--PEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLP-EEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVA  156 (568)
T ss_dssp             HHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHH
T ss_pred             HHHHHhcC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHh
Confidence            99999876  56788999999999999999999999999988743 3678899999999999   999999999999998


Q ss_pred             cC
Q 021791          254 KG  255 (307)
Q Consensus       254 ~~  255 (307)
                      .+
T Consensus       157 ~~  158 (568)
T 2vsy_A          157 QG  158 (568)
T ss_dssp             HT
T ss_pred             cC
Confidence            74

>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}

Probab=99.13  E-value=9.7e-10  Score=79.34  Aligned_cols=163  Identities=9%  Similarity=-0.046  Sum_probs=125.8

Q ss_pred             hhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHhcCCChhHHHHHHHHHhhcCCCCccHHHHHHHHHH
Q 021791          120 ATYTSVVKCLCSCGRIEDAEELLGEMVRNGVSPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDDLCVPNIHTYNILIGM  199 (307)
Q Consensus       120 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~  199 (307)
                      ..+......+...|++++|...|++..+..+. +...+..+...+...|++++|...++......  + +...+..+...
T Consensus         7 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~--p-~~~~~~~~~~~   82 (176)
T 2r5s_A            7 EQLLKQVSELLQQGEHAQALNVIQTLSDELQS-RGDVKLAKADCLLETKQFELAQELLATIPLEY--Q-DNSYKSLIAKL   82 (176)
T ss_dssp             TTHHHHHHHHHHTTCHHHHHHHHHTSCHHHHT-SHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGG--C-CHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC-cHHHHHHHHHHHHHCCCHHHHHHHHHHhhhcc--C-ChHHHHHHHHH
Confidence            34566778889999999999999998775433 67889999999999999999999999988764  3 44433332222


Q ss_pred             -HHhcCcHHHHHHHHHHHhhCCCCCCHHhHHHHHHHHHccCcHHHHHHHHHHHHHcCCCC-cHhhHHHHHHHHhhchhHH
Q 021791          200 -FMALNRMDMVREIWNHVKGSELGLDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLP-QKVTFETLYRGLIQSDMLR  277 (307)
Q Consensus       200 -~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~  277 (307)
                       +...+....|...++........ +...+..+..++...|++++|...|+++++....+ +...+..+...+...|+.+
T Consensus        83 ~~~~~~~~~~a~~~~~~al~~~P~-~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~  161 (176)
T 2r5s_A           83 ELHQQAAESPELKRLEQELAANPD-NFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGN  161 (176)
T ss_dssp             HHHHHHTSCHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSC
T ss_pred             HHHhhcccchHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCC
Confidence             12222334578888888876432 68889999999999999999999999999764322 2457888999999999999


Q ss_pred             HHHHHHHHhh
Q 021791          278 TWRRLKKKLD  287 (307)
Q Consensus       278 ~a~~~~~~~~  287 (307)
                      +|...+++..
T Consensus       162 ~A~~~y~~al  171 (176)
T 2r5s_A          162 AIASKYRRQL  171 (176)
T ss_dssp             HHHHHHHHHH
T ss_pred             cHHHHHHHHH
Confidence            9999988764

>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}

Probab=99.12  E-value=4.3e-08  Score=76.70  Aligned_cols=217  Identities=8%  Similarity=-0.027  Sum_probs=174.1

Q ss_pred             HHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcC--CchhHHHHHHHHHHcCCCCchhhHHHHHHHH----Hhc---CChH
Q 021791           66 RNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAH--KPQLSLDKLNFMKEKGICPTVATYTSVVKCL----CSC---GRIE  136 (307)
Q Consensus        66 ~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~----~~~---~~~~  136 (307)
                      ++|++.++.++... +-+...|+.--.++...|  +++++++.++.+.....+ +..+|+.--..+    ...   ++++
T Consensus        50 ~~aL~~t~~~L~~n-P~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk-~y~aW~~R~~iL~~~~~~l~~~~~~~  127 (306)
T 3dra_A           50 ERALHITELGINEL-ASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEK-NYQIWNYRQLIIGQIMELNNNDFDPY  127 (306)
T ss_dssp             HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTT-CCHHHHHHHHHHHHHHHHTTTCCCTH
T ss_pred             HHHHHHHHHHHHHC-cHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcc-cHHHHHHHHHHHHHHHHhccccCCHH
Confidence            68999999998874 336667888888888888  999999999999988654 666666555554    445   7899


Q ss_pred             HHHHHHHHHHhCCCCCCHhhHHHHHHHHhcCCChh--HHHHHHHHHhhcCCCCccHHHHHHHHHHHHhcCc------HHH
Q 021791          137 DAEELLGEMVRNGVSPSAETYNCFFKEYRGRKDAN--GAMKLYRQMKEDDLCVPNIHTYNILIGMFMALNR------MDM  208 (307)
Q Consensus       137 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~--~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~------~~~  208 (307)
                      +++.+++.+.+...+ +..+|+.-...+.+.+.++  ++++.++.+.+.+  +-|...|+.-...+...+.      +++
T Consensus       128 ~EL~~~~~~l~~~pk-ny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d--~~N~sAW~~R~~ll~~l~~~~~~~~~~e  204 (306)
T 3dra_A          128 REFDILEAMLSSDPK-NHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTD--LKNNSAWSHRFFLLFSKKHLATDNTIDE  204 (306)
T ss_dssp             HHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHSSGGGCCHHHHHH
T ss_pred             HHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHhccccchhhhHHH
Confidence            999999999988665 8888888877788888888  9999999999887  6788899888777777776      899


Q ss_pred             HHHHHHHHhhCCCCCCHHhHHHHHHHHHccCcHHH-HHHHHHHHHHcC--CCCcHhhHHHHHHHHhhchhHHHHHHHHHH
Q 021791          209 VREIWNHVKGSELGLDLDSYTMLIHGLCEKQKWKE-ACQYFVEMIEKG--LLPQKVTFETLYRGLIQSDMLRTWRRLKKK  285 (307)
Q Consensus       209 a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~-a~~~~~~~~~~~--~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~  285 (307)
                      +++.++.+....+. |...|+..-..+.+.|+... +..+..++.+.+  -..++..+..+...+.+.|+.++|.++++.
T Consensus       205 El~~~~~aI~~~p~-n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~~~~~  283 (306)
T 3dra_A          205 ELNYVKDKIVKCPQ-NPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESRTVYDL  283 (306)
T ss_dssp             HHHHHHHHHHHCSS-CHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHhCCC-CccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHH
Confidence            99999998887644 88889888888888877444 555666665432  134667888899999999999999999999


Q ss_pred             hhh
Q 021791          286 LDE  288 (307)
Q Consensus       286 ~~~  288 (307)
                      +.+
T Consensus       284 l~~  286 (306)
T 3dra_A          284 LKS  286 (306)
T ss_dssp             HHH
T ss_pred             HHh
Confidence            875

>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A

Probab=99.07  E-value=6.4e-08  Score=84.03  Aligned_cols=234  Identities=10%  Similarity=-0.025  Sum_probs=166.8

Q ss_pred             hhHHHHHHHHHhcCCCCcHHHHHHHHHHHHhhCCCCcchhhHHHHHHHH-HHHHHHHhcCCCCCHHHHHHHHHHHHhcCC
Q 021791           21 DMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPNERFEKTIRNAE-KVFDEMRVRGIEPDVTSFSIVLHVYSRAHK   99 (307)
Q Consensus        21 ~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~a~-~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~   99 (307)
                      +++..+|++.+.. .+-....|.....-+..          .++.++|. ++|++.... .+.+...|...+...-+.|+
T Consensus       326 ~Rv~~~Ye~aL~~-~p~~~~lW~~ya~~~~~----------~~~~~~a~r~il~rAi~~-~P~s~~Lwl~~a~~ee~~~~  393 (679)
T 4e6h_A          326 ARMTYVYMQAAQH-VCFAPEIWFNMANYQGE----------KNTDSTVITKYLKLGQQC-IPNSAVLAFSLSEQYELNTK  393 (679)
T ss_dssp             HHHHHHHHHHHHH-TTTCHHHHHHHHHHHHH----------HSCCTTHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHHHH-cCCCHHHHHHHHHHHHh----------cCcHHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHhCC
Confidence            4456778888766 33366777777777766          45556775 888888765 45567778888888889999


Q ss_pred             chhHHHHHHHHHHcCC---------CC------------chhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHhhHH
Q 021791          100 PQLSLDKLNFMKEKGI---------CP------------TVATYTSVVKCLCSCGRIEDAEELLGEMVRNGVSPSAETYN  158 (307)
Q Consensus       100 ~~~a~~~~~~~~~~~~---------~~------------~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~  158 (307)
                      ++.|.++|+.+.....         .|            ...+|...+....+.|..+.|..+|.+..+.........|.
T Consensus       394 ~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~~~~~~lyi  473 (679)
T 4e6h_A          394 IPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKKLVTPDIYL  473 (679)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTGGGSCTHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCChHHHH
Confidence            9999999988876410         12            23467778888888899999999999988751112334444


Q ss_pred             HHHHHHhcC-CChhHHHHHHHHHhhcCCCCccHHHHHHHHHHHHhcCcHHHHHHHHHHHhhCCCCC--CHHhHHHHHHHH
Q 021791          159 CFFKEYRGR-KDANGAMKLYRQMKEDDLCVPNIHTYNILIGMFMALNRMDMVREIWNHVKGSELGL--DLDSYTMLIHGL  235 (307)
Q Consensus       159 ~l~~~~~~~-~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~li~~~  235 (307)
                      ..+..-.+. ++.+.|..+|+...+..  +.+...+...+......|+.+.|+.+|+........+  ....|...+..-
T Consensus       474 ~~A~lE~~~~~d~e~Ar~ife~~Lk~~--p~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~~~~~~~lw~~~~~fE  551 (679)
T 4e6h_A          474 ENAYIEYHISKDTKTACKVLELGLKYF--ATDGEYINKYLDFLIYVNEESQVKSLFESSIDKISDSHLLKMIFQKVIFFE  551 (679)
T ss_dssp             HHHHHHHTTTSCCHHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhCCCHHHHHHHHHHHHHHC--CCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHH
Confidence            333333343 45899999999988873  4566667788888888899999999999988764322  345688888888


Q ss_pred             HccCcHHHHHHHHHHHHHcCCCCcHhhHHHHHHHH
Q 021791          236 CEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGL  270 (307)
Q Consensus       236 ~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~  270 (307)
                      .+.|+.+.+..+.+++.+.  .|+......+++-|
T Consensus       552 ~~~G~~~~~~~v~~R~~~~--~P~~~~~~~f~~ry  584 (679)
T 4e6h_A          552 SKVGSLNSVRTLEKRFFEK--FPEVNKLEEFTNKY  584 (679)
T ss_dssp             HHTCCSHHHHHHHHHHHHH--STTCCHHHHHHHHT
T ss_pred             HHcCCHHHHHHHHHHHHHh--CCCCcHHHHHHHHh
Confidence            8899999999999999876  35555555555444

>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A

Probab=99.06  E-value=8.2e-08  Score=75.23  Aligned_cols=162  Identities=10%  Similarity=-0.061  Sum_probs=76.0

Q ss_pred             HHHHHhcCCchhHHHHHHHHHHcCC-CCch----hhHHHHHHHHHhcCChHHHHHHHHHHHhCCCC-CC----HhhHHHH
Q 021791           91 LHVYSRAHKPQLSLDKLNFMKEKGI-CPTV----ATYTSVVKCLCSCGRIEDAEELLGEMVRNGVS-PS----AETYNCF  160 (307)
Q Consensus        91 l~~~~~~~~~~~a~~~~~~~~~~~~-~~~~----~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~-~~----~~~~~~l  160 (307)
                      +..+...|++++|.++++...+... .|+.    ..+..+...+...+++++|...+++....... ++    ..+++.+
T Consensus        82 i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~l  161 (293)
T 3u3w_A           82 VIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAI  161 (293)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHHH
T ss_pred             HHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHHH
Confidence            4455556666666666666554321 1111    12223444444555666666666655542211 11    1245555


Q ss_pred             HHHHhcCCChhHHHHHHHHHhhc-----CCCCccHHHHHHHHHHHHhcCcHHHHHHHHHHHhhC----CCCCC-HHhHHH
Q 021791          161 FKEYRGRKDANGAMKLYRQMKED-----DLCVPNIHTYNILIGMFMALNRMDMVREIWNHVKGS----ELGLD-LDSYTM  230 (307)
Q Consensus       161 ~~~~~~~~~~~~a~~~~~~~~~~-----~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~~-~~~~~~  230 (307)
                      ...|...|++++|...+++..+.     +..+....++..+...|...|++++|.+.++.....    +..+. ..+|..
T Consensus       162 g~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~~  241 (293)
T 3u3w_A          162 ANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQ  241 (293)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHHH
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHH
Confidence            55566666666666665555421     000111224555555555555555555555544321    11111 334555


Q ss_pred             HHHHHHccC-cHHHHHHHHHHHH
Q 021791          231 LIHGLCEKQ-KWKEACQYFVEMI  252 (307)
Q Consensus       231 li~~~~~~g-~~~~a~~~~~~~~  252 (307)
                      +..+|.+.| .+++|...+++.+
T Consensus       242 lg~~~~~~g~~~~~A~~~~~~Al  264 (293)
T 3u3w_A          242 RGECLRKLEYEEAEIEDAYKKAS  264 (293)
T ss_dssp             HHHHHHHTTCCHHHHHHHHHHHH
T ss_pred             HHHHHHHhCCcHHHHHHHHHHHH
Confidence            555555555 2455555555543

>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*

Probab=99.05  E-value=6.5e-07  Score=70.91  Aligned_cols=231  Identities=9%  Similarity=0.051  Sum_probs=160.4

Q ss_pred             HHHHHHHHhcCchhhHHHHHHHHHhcCCCCcHHHHHHHHHHHHhhCCCCcchhhHH-HHHHHHHHHHHHHhcCCCCCHHH
Q 021791            8 TSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPNERFEK-TIRNAEKVFDEMRVRGIEPDVTS   86 (307)
Q Consensus         8 ~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~   86 (307)
                      +.+-......+..++|+++++.++..+.. +...|+.--..+..          .+ .++++++.++.+.... +-+..+
T Consensus        58 ~~~r~~~~~~e~se~AL~lt~~~L~~nP~-~ytaWn~R~~iL~~----------l~~~l~eEL~~~~~~L~~n-PKny~a  125 (349)
T 3q7a_A           58 DYFRAIAAKEEKSERALELTEIIVRMNPA-HYTVWQYRFSLLTS----------LNKSLEDELRLMNEFAVQN-LKSYQV  125 (349)
T ss_dssp             HHHHHHHHTTCCSHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHH----------TTCCHHHHHHHHHHHHHTT-CCCHHH
T ss_pred             HHHHHHHHhCCCCHHHHHHHHHHHHhCch-hHHHHHHHHHHHHH----------hhhhHHHHHHHHHHHHHhC-CCcHHH
Confidence            33333344445567899999999887322 45567777666666          44 4889999999998875 347778


Q ss_pred             HHHHHHHHHhc-C-CchhHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCChH--------HHHHHHHHHHhCCCCCCHhh
Q 021791           87 FSIVLHVYSRA-H-KPQLSLDKLNFMKEKGICPTVATYTSVVKCLCSCGRIE--------DAEELLGEMVRNGVSPSAET  156 (307)
Q Consensus        87 ~~~ll~~~~~~-~-~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~--------~a~~~~~~~~~~~~~~~~~~  156 (307)
                      |+.-...+... + ++++++++++.+.+.... +..+|+.-...+.+.|.++        ++++.++++.+..+. |...
T Consensus       126 W~hR~wlL~~l~~~~~~~EL~~~~k~L~~dpk-Ny~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~dp~-N~SA  203 (349)
T 3q7a_A          126 WHHRLLLLDRISPQDPVSEIEYIHGSLLPDPK-NYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVDGR-NNSA  203 (349)
T ss_dssp             HHHHHHHHHHHCCSCCHHHHHHHHHHTSSCTT-CHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCTT-CHHH
T ss_pred             HHHHHHHHHHhcCCChHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhCCC-CHHH
Confidence            88777777776 6 888999999999887654 7777776666666655555        888888888887665 7788


Q ss_pred             HHHHHHHHhcCCC-------hhHHHHHHHHHhhcCCCCccHHHHHHHHHHHHhcCcH--------------------HHH
Q 021791          157 YNCFFKEYRGRKD-------ANGAMKLYRQMKEDDLCVPNIHTYNILIGMFMALNRM--------------------DMV  209 (307)
Q Consensus       157 ~~~l~~~~~~~~~-------~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~--------------------~~a  209 (307)
                      |+.....+.+.+.       ++++++.+.+.....  +-|...|+-+-..+.+.|..                    ...
T Consensus       204 W~~R~~lL~~l~~~~~~~~~~~eELe~~~~aI~~~--P~n~SaW~Ylr~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  281 (349)
T 3q7a_A          204 WGWRWYLRVSRPGAETSSRSLQDELIYILKSIHLI--PHNVSAWNYLRGFLKHFSLPLVPILPAILPYTASKLNPDIETV  281 (349)
T ss_dssp             HHHHHHHHTTSTTCCCCHHHHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCCSGGGHHHHGGGTC----------
T ss_pred             HHHHHHHHHhccccccchHHHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHhcCCCcccccccccccccccccccchhH
Confidence            8887777777775       578888888887775  67788887776666666543                    223


Q ss_pred             HHHHHHHhhCC-----CCCCHHhHHHHHHHHHccCcHHHHHHHHHHHHHc
Q 021791          210 REIWNHVKGSE-----LGLDLDSYTMLIHGLCEKQKWKEACQYFVEMIEK  254 (307)
Q Consensus       210 ~~~~~~~~~~~-----~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~  254 (307)
                      ......+...+     -.++...+..++..|...|+.++|.++++.+.+.
T Consensus       282 ~~~~~~~~~~~~~~~~~~~s~~al~~l~d~~~~~~~~~~a~~~~~~l~~~  331 (349)
T 3q7a_A          282 EAFGFPMPSDPLPEDTPLPVPLALEYLADSFIEQNRVDDAAKVFEKLSSE  331 (349)
T ss_dssp             ----CCCCC-CCCSSCCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHhcccccccCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh
Confidence            33333333221     1246777788888888888888888888887654

>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*

Probab=99.03  E-value=4.2e-08  Score=72.86  Aligned_cols=92  Identities=11%  Similarity=-0.026  Sum_probs=48.1

Q ss_pred             HHHHHHHHHhcCCchhHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHhc
Q 021791           87 FSIVLHVYSRAHKPQLSLDKLNFMKEKGICPTVATYTSVVKCLCSCGRIEDAEELLGEMVRNGVSPSAETYNCFFKEYRG  166 (307)
Q Consensus        87 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~  166 (307)
                      +..+...+...|++++|...|++..    .|+...+..+...|...|++++|...+++...... .+...+..+..++..
T Consensus         9 ~~~~g~~~~~~~~~~~A~~~~~~a~----~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~-~~~~~~~~lg~~~~~   83 (213)
T 1hh8_A            9 LWNEGVLAADKKDWKGALDAFSAVQ----DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDK-HLAVAYFQRGMLYYQ   83 (213)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHTSS----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhCCHHHHHHHHHHHc----CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc-cchHHHHHHHHHHHH
Confidence            3344445555555555555555442    33455555555555555555555555555554432 244455555555555


Q ss_pred             CCChhHHHHHHHHHhhc
Q 021791          167 RKDANGAMKLYRQMKED  183 (307)
Q Consensus       167 ~~~~~~a~~~~~~~~~~  183 (307)
                      .|++++|...|++..+.
T Consensus        84 ~~~~~~A~~~~~~al~~  100 (213)
T 1hh8_A           84 TEKYDLAIKDLKEALIQ  100 (213)
T ss_dssp             TTCHHHHHHHHHHHHHT
T ss_pred             cccHHHHHHHHHHHHHh
Confidence            55555555555555544

>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*

Probab=99.02  E-value=4e-08  Score=72.96  Aligned_cols=127  Identities=12%  Similarity=0.032  Sum_probs=74.6

Q ss_pred             HHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHhcCCChhHHHHHHHHHhhcCCCCccHHHHHHHHHHHH
Q 021791          122 YTSVVKCLCSCGRIEDAEELLGEMVRNGVSPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDDLCVPNIHTYNILIGMFM  201 (307)
Q Consensus       122 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~  201 (307)
                      +..+...+...|++++|...|++..    .|+...+..+...+...|++++|...+++.....  +.+...+..+..++.
T Consensus         9 ~~~~g~~~~~~~~~~~A~~~~~~a~----~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~~lg~~~~   82 (213)
T 1hh8_A            9 LWNEGVLAADKKDWKGALDAFSAVQ----DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD--KHLAVAYFQRGMLYY   82 (213)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHTSS----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhCCHHHHHHHHHHHc----CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--ccchHHHHHHHHHHH
Confidence            3444555566666666666665552    3455566666666666666666666666666554  445556666666666


Q ss_pred             hcCcHHHHHHHHHHHhhCCCC--------------C-CHHhHHHHHHHHHccCcHHHHHHHHHHHHHc
Q 021791          202 ALNRMDMVREIWNHVKGSELG--------------L-DLDSYTMLIHGLCEKQKWKEACQYFVEMIEK  254 (307)
Q Consensus       202 ~~~~~~~a~~~~~~~~~~~~~--------------~-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~  254 (307)
                      ..|++++|.+.++........              | ....+..+..+|...|++++|...|++..+.
T Consensus        83 ~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~  150 (213)
T 1hh8_A           83 QTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSM  150 (213)
T ss_dssp             HTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred             HcccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHc
Confidence            666666666666666553211              0 1145556666666666666666666666644

>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}

Probab=99.02  E-value=1.9e-08  Score=79.48  Aligned_cols=219  Identities=9%  Similarity=0.004  Sum_probs=149.6

Q ss_pred             hcCchhhHHHHHHHHHhc------CCCCcH----HHHHHHHHHHHhhCCCCcchhhHHHHHHHHHHHHHHHhc----CCC
Q 021791           16 KINRIDMAERFLGEMIER------GVEPNV----VTYNVLLNGVCRRASLHPNERFEKTIRNAEKVFDEMRVR----GIE   81 (307)
Q Consensus        16 ~~g~~~~a~~~~~~~~~~------~~~p~~----~~~~~ll~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~----~~~   81 (307)
                      ..|++++|.+++++..+.      +..++.    ..|......+..          .+++++|...|.+..+.    +-.
T Consensus         3 ~~~~~~eA~~~~~~a~k~~~~~~~~~~~~~~~A~~~~~~a~~~~~~----------~g~~~~A~~~~~~al~~~~~~~~~   72 (307)
T 2ifu_A            3 AAQKISEAHEHIAKAEKYLKTSFMKWKPDYDSAASEYAKAAVAFKN----------AKQLEQAKDAYLQEAEAHANNRSL   72 (307)
T ss_dssp             CHHHHHHHHHHHHHHHHHHCCCSSSCSCCHHHHHHHHHHHHHHHHH----------TTCHHHHHHHHHHHHHHHHHTTCH
T ss_pred             ccchHHHHHHHHHHHHHHccccccCCCCCHHHHHHHHHHHHHHHHH----------cCCHHHHHHHHHHHHHHHHHcCCH
Confidence            357788888888877653      112332    245555566666          67778888888776543    111


Q ss_pred             C-CHHHHHHHHHHHHhcCCchhHHHHHHHHHHc----CCCC-chhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCC---
Q 021791           82 P-DVTSFSIVLHVYSRAHKPQLSLDKLNFMKEK----GICP-TVATYTSVVKCLCSCGRIEDAEELLGEMVRNGVSP---  152 (307)
Q Consensus        82 ~-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~----~~~~-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~---  152 (307)
                      + -..+|+.+...|...|++++|...|++..+.    |-.. ...++..+...|.. |++++|+..|++........   
T Consensus        73 ~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~~~~  151 (307)
T 2ifu_A           73 FHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVHLYQQAAAVFENEERL  151 (307)
T ss_dssp             HHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHTTCH
T ss_pred             HHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhCCCh
Confidence            1 1457888999999999999999999887654    2111 24577888889988 99999999999887532111   


Q ss_pred             --CHhhHHHHHHHHhcCCChhHHHHHHHHHhhcCC---CCcc-HHHHHHHHHHHHhcCcHHHHHHHHHHHhhCCCCC-CH
Q 021791          153 --SAETYNCFFKEYRGRKDANGAMKLYRQMKEDDL---CVPN-IHTYNILIGMFMALNRMDMVREIWNHVKGSELGL-DL  225 (307)
Q Consensus       153 --~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~---~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~  225 (307)
                        ...++..+...|...|++++|...|++......   ..++ ...+..+...+...|++++|...+++.. ..... +.
T Consensus       152 ~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al-~~p~~~~~  230 (307)
T 2ifu_A          152 RQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKCVRESY-SIPGFSGS  230 (307)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHT-TSTTSTTS
T ss_pred             hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHh-CCCCCCCC
Confidence              145788889999999999999999999876421   0111 2366777778888899999999999988 42111 11


Q ss_pred             ---HhHHHHHHHHHccCcHHHHHHH
Q 021791          226 ---DSYTMLIHGLCEKQKWKEACQY  247 (307)
Q Consensus       226 ---~~~~~li~~~~~~g~~~~a~~~  247 (307)
                         .....++.++ ..|+.+.+..+
T Consensus       231 ~e~~~l~~l~~~~-~~~d~~~~~~~  254 (307)
T 2ifu_A          231 EDCAALEDLLQAY-DEQDEEQLLRV  254 (307)
T ss_dssp             HHHHHHHHHHHHH-HTTCHHHHHHH
T ss_pred             HHHHHHHHHHHHH-HhcCHHHHHHH
Confidence               2344455555 46776655553

>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A

Probab=99.00  E-value=9e-08  Score=83.10  Aligned_cols=221  Identities=10%  Similarity=0.028  Sum_probs=168.7

Q ss_pred             HHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCchhHH-HHHHHHHHcCCCCchhhHHHHHHHHHhcCChHHHHHHHHH
Q 021791           66 RNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHKPQLSL-DKLNFMKEKGICPTVATYTSVVKCLCSCGRIEDAEELLGE  144 (307)
Q Consensus        66 ~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~-~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~  144 (307)
                      +.+..+|++.... .+-+...|...+..+...|+.++|. ++|+..... .+.+...|...+...-+.|+++.|..+|+.
T Consensus       326 ~Rv~~~Ye~aL~~-~p~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~-~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek  403 (679)
T 4e6h_A          326 ARMTYVYMQAAQH-VCFAPEIWFNMANYQGEKNTDSTVITKYLKLGQQC-IPNSAVLAFSLSEQYELNTKIPEIETTILS  403 (679)
T ss_dssp             HHHHHHHHHHHHH-TTTCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHH-cCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence            4456678777766 3457888888999899999999997 999999875 344666677888888999999999999999


Q ss_pred             HHhCC---------CCCC------------HhhHHHHHHHHhcCCChhHHHHHHHHHhhc-CCCCccHHHHHHHHHHHHh
Q 021791          145 MVRNG---------VSPS------------AETYNCFFKEYRGRKDANGAMKLYRQMKED-DLCVPNIHTYNILIGMFMA  202 (307)
Q Consensus       145 ~~~~~---------~~~~------------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~  202 (307)
                      +....         ..|+            ..+|...+....+.|+.+.|..+|....+. ..  .....|...+..-.+
T Consensus       404 ~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~~--~~~~lyi~~A~lE~~  481 (679)
T 4e6h_A          404 CIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKKL--VTPDIYLENAYIEYH  481 (679)
T ss_dssp             HHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTGGG--SCTHHHHHHHHHHHT
T ss_pred             HHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCC--CChHHHHHHHHHHHH
Confidence            88641         0132            346888888888899999999999999876 32  233444433333334


Q ss_pred             c-CcHHHHHHHHHHHhhCCCCCCHHhHHHHHHHHHccCcHHHHHHHHHHHHHcCCCC--cHhhHHHHHHHHhhchhHHHH
Q 021791          203 L-NRMDMVREIWNHVKGSELGLDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLP--QKVTFETLYRGLIQSDMLRTW  279 (307)
Q Consensus       203 ~-~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p--~~~~~~~l~~~~~~~g~~~~a  279 (307)
                      . ++.+.|.++|+...+. .+-+...|...+......|+.+.|..+|++.+.....+  ....|...+..-.+.|+.+.+
T Consensus       482 ~~~d~e~Ar~ife~~Lk~-~p~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~~~  560 (679)
T 4e6h_A          482 ISKDTKTACKVLELGLKY-FATDGEYINKYLDFLIYVNEESQVKSLFESSIDKISDSHLLKMIFQKVIFFESKVGSLNSV  560 (679)
T ss_dssp             TTSCCHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHH
T ss_pred             hCCCHHHHHHHHHHHHHH-CCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHHH
Confidence            4 4599999999998876 33366777888888888999999999999998763221  335688888888889999999


Q ss_pred             HHHHHHhhhcCC
Q 021791          280 RRLKKKLDEESI  291 (307)
Q Consensus       280 ~~~~~~~~~~~~  291 (307)
                      ..+.+++.+.-.
T Consensus       561 ~~v~~R~~~~~P  572 (679)
T 4e6h_A          561 RTLEKRFFEKFP  572 (679)
T ss_dssp             HHHHHHHHHHST
T ss_pred             HHHHHHHHHhCC
Confidence            999999976554

>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A

Probab=99.00  E-value=4.3e-08  Score=69.54  Aligned_cols=91  Identities=14%  Similarity=0.091  Sum_probs=39.0

Q ss_pred             HHHHHhcCCChhHHHHHHHHHhhcCCCCccHHHHHHHHHHHHhcCcHHHHHHHHHHHhhCCCCCCHHhHHHHHHHHHccC
Q 021791          160 FFKEYRGRKDANGAMKLYRQMKEDDLCVPNIHTYNILIGMFMALNRMDMVREIWNHVKGSELGLDLDSYTMLIHGLCEKQ  239 (307)
Q Consensus       160 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g  239 (307)
                      +...+...|++++|...+.+.....  +.+..++..+...+...|++++|...++...... +.+...+..+..++...|
T Consensus        19 ~a~~~~~~~~~~~A~~~~~~al~~~--~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~~~~~~   95 (166)
T 1a17_A           19 QANDYFKAKDYENAIKFYSQAIELN--PSNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASNMALG   95 (166)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHS--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHccCHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHhc
Confidence            3333344444444444444443332  2233444444444444444444444444444332 113344444444444444


Q ss_pred             cHHHHHHHHHHHHH
Q 021791          240 KWKEACQYFVEMIE  253 (307)
Q Consensus       240 ~~~~a~~~~~~~~~  253 (307)
                      ++++|...+++..+
T Consensus        96 ~~~~A~~~~~~a~~  109 (166)
T 1a17_A           96 KFRAALRDYETVVK  109 (166)
T ss_dssp             CHHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHH
Confidence            55555555444444

>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A

Probab=98.99  E-value=6.3e-07  Score=70.13  Aligned_cols=208  Identities=9%  Similarity=0.038  Sum_probs=141.9

Q ss_pred             HHHHHhcCCCCCHHHHHHHHHHHHhcCCchhHHHHHHHHHHcCCCCchh---hHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 021791           72 FDEMRVRGIEPDVTSFSIVLHVYSRAHKPQLSLDKLNFMKEKGICPTVA---TYTSVVKCLCSCGRIEDAEELLGEMVRN  148 (307)
Q Consensus        72 ~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~---~~~~ll~~~~~~~~~~~a~~~~~~~~~~  148 (307)
                      +.++......|+..+...+...+.-.-  +   .++    ......+..   .+...+..+...|++++|...+++....
T Consensus        34 ~s~~e~g~~~~~~~~l~~i~~~l~~~~--~---~~~----~~~~~~~~~~~~~l~~~i~~~~~~~~y~~a~~~~~~~l~~  104 (293)
T 3u3w_A           34 VSRIESGAVYPSMDILQGIAAKLQIPI--I---HFY----EVLIYSDIERKKQFKDQVIMLCKQKRYKEIYNKVWNELKK  104 (293)
T ss_dssp             HHHHHTTSCCCCHHHHHHHHHHHTCCT--H---HHH----HTTTSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred             HHHHHCCCCCCCHHHHHHHHHHhCcCH--H---HHh----CCCCCCcchhHHHHHHHHHHHHHHhhHHHHHHHHHHHhcc
Confidence            333333335677777766666554221  1   111    111122222   2334467788999999999999999874


Q ss_pred             CC-CCCH----hhHHHHHHHHhcCCChhHHHHHHHHHhhcCCCCcc----HHHHHHHHHHHHhcCcHHHHHHHHHHHhh-
Q 021791          149 GV-SPSA----ETYNCFFKEYRGRKDANGAMKLYRQMKEDDLCVPN----IHTYNILIGMFMALNRMDMVREIWNHVKG-  218 (307)
Q Consensus       149 ~~-~~~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-  218 (307)
                      .. .|+.    ..+..+...+...+++++|...+++........++    ..+++.+...|...|++++|...++.+.. 
T Consensus       105 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~  184 (293)
T 3u3w_A          105 EEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQ  184 (293)
T ss_dssp             CCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             ccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence            32 2221    13335677778888999999999999874321233    33689999999999999999999998874 


Q ss_pred             ---C-CCCC-CHHhHHHHHHHHHccCcHHHHHHHHHHHHHc----CCCCc-HhhHHHHHHHHhhch-hHHHHHHHHHHhh
Q 021791          219 ---S-ELGL-DLDSYTMLIHGLCEKQKWKEACQYFVEMIEK----GLLPQ-KVTFETLYRGLIQSD-MLRTWRRLKKKLD  287 (307)
Q Consensus       219 ---~-~~~~-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~----~~~p~-~~~~~~l~~~~~~~g-~~~~a~~~~~~~~  287 (307)
                         . +..+ ...++..+...|.+.|++++|...+++.++.    +..+. ..++..+..++.+.| ..++|.+.+++..
T Consensus       185 ~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~~A~~~~~~Al  264 (293)
T 3u3w_A          185 LEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKAS  264 (293)
T ss_dssp             HHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred             HHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHH
Confidence               1 1111 2336888999999999999999999988754    22222 567888889999999 4689988887764


Q ss_pred             h
Q 021791          288 E  288 (307)
Q Consensus       288 ~  288 (307)
                      .
T Consensus       265 ~  265 (293)
T 3u3w_A          265 F  265 (293)
T ss_dssp             H
T ss_pred             H
Confidence            3

>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2

Probab=98.98  E-value=1.2e-08  Score=79.56  Aligned_cols=195  Identities=9%  Similarity=-0.024  Sum_probs=133.5

Q ss_pred             CHHHHHHHHHHHHhcCCchhHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHhhHHHHHH
Q 021791           83 DVTSFSIVLHVYSRAHKPQLSLDKLNFMKEKGICPTVATYTSVVKCLCSCGRIEDAEELLGEMVRNGVSPSAETYNCFFK  162 (307)
Q Consensus        83 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~  162 (307)
                      +...+..+...+...|++++|...|+...+.... +...|..+..+|.+.|++++|...+++..+.... +...+..+..
T Consensus         3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~lg~   80 (281)
T 2c2l_A            3 SAQELKEQGNRLFVGRKYPEAAACYGRAITRNPL-VAVYYTNRALCYLKMQQPEQALADCRRALELDGQ-SVKAHFFLGQ   80 (281)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTT-CHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCc-cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC-CHHHHHHHHH
Confidence            5667888889999999999999999999887533 7888999999999999999999999999887543 6788889999


Q ss_pred             HHhcCCChhHHHHHHHHHhhcCCCCccHHHHHHHHHHHHhcCcHHHHHHHHHHHhhCCCCCCHHhHHHHHHHHHccCcHH
Q 021791          163 EYRGRKDANGAMKLYRQMKEDDLCVPNIHTYNILIGMFMALNRMDMVREIWNHVKGSELGLDLDSYTMLIHGLCEKQKWK  242 (307)
Q Consensus       163 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~  242 (307)
                      ++...|++++|...|.+..+..  +.+...+...+....+..   .+.. +..........+......+ ..+. .|+++
T Consensus        81 ~~~~~g~~~~A~~~~~~al~l~--p~~~~~~~~~~~~~~~~~---~~~~-~~~~~~~~~~~~~~i~~~l-~~l~-~~~~~  152 (281)
T 2c2l_A           81 CQLEMESYDEAIANLQRAYSLA--KEQRLNFGDDIPSALRIA---KKKR-WNSIEERRIHQESELHSYL-TRLI-AAERE  152 (281)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHH--HHTTCCCCSHHHHHHHHH---HHHH-HHHHHHTCCCCCCHHHHHH-HHHH-HHHHH
T ss_pred             HHHHcCCHHHHHHHHHHHHHhC--ccchhhHHHHHHHHHHHH---HHHH-HHHHHHHHHhhhHHHHHHH-HHHH-HHHHH
Confidence            9999999999999999887653  111111111121111111   1111 1222222233344443333 3332 68999


Q ss_pred             HHHHHHHHHHHcCCCCcHhhH-HHHHHHHhhc-hhHHHHHHHHHHhhhc
Q 021791          243 EACQYFVEMIEKGLLPQKVTF-ETLYRGLIQS-DMLRTWRRLKKKLDEE  289 (307)
Q Consensus       243 ~a~~~~~~~~~~~~~p~~~~~-~~l~~~~~~~-g~~~~a~~~~~~~~~~  289 (307)
                      +|++.+++..+.  .|+.... ..+...+.+. +.++++.++|++..+.
T Consensus       153 ~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~~  199 (281)
T 2c2l_A          153 RELEECQRNHEG--HEDDGHIRAQQACIEAKHDKYMADMDELFSQVDEK  199 (281)
T ss_dssp             HHHTTTSGGGTT--TSCHHHHTHHHHHHHHHHHHHHHHHHHHHHHSSCT
T ss_pred             HHHHHHHhhhcc--ccchhhhhhHHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence            999999887754  5554433 3333334444 6788999999988664

>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}

Probab=98.98  E-value=2e-07  Score=73.05  Aligned_cols=170  Identities=8%  Similarity=-0.102  Sum_probs=116.4

Q ss_pred             HHHHHHHHHHHHhcCCchhHHHHHHHHHHcCCCCc-----hhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCC---CC--
Q 021791           84 VTSFSIVLHVYSRAHKPQLSLDKLNFMKEKGICPT-----VATYTSVVKCLCSCGRIEDAEELLGEMVRNGVS---PS--  153 (307)
Q Consensus        84 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~-----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~---~~--  153 (307)
                      ...+...+..+...|++++|.+.+....+.....+     ...+..+...+...|++++|...+++.......   +.  
T Consensus        75 ~~~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~  154 (293)
T 2qfc_A           75 KKQFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQN  154 (293)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHH
T ss_pred             HHHHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHH
Confidence            34555667778888999999998887776532211     122344556667788899999888887753211   11  


Q ss_pred             HhhHHHHHHHHhcCCChhHHHHHHHHHhh---cCCCCc--cHHHHHHHHHHHHhcCcHHHHHHHHHHHhhCC----CCC-
Q 021791          154 AETYNCFFKEYRGRKDANGAMKLYRQMKE---DDLCVP--NIHTYNILIGMFMALNRMDMVREIWNHVKGSE----LGL-  223 (307)
Q Consensus       154 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~----~~~-  223 (307)
                      ..+++.+...|...|++++|...+++..+   .....+  ...++..+...|...|++++|...+++.....    ... 
T Consensus       155 ~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~  234 (293)
T 2qfc_A          155 LYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMAL  234 (293)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSS
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHH
Confidence            34778888888889999999988888762   211011  12577888888888999999988888765431    111 


Q ss_pred             CHHhHHHHHHHHHccCcHHHH-HHHHHHHHH
Q 021791          224 DLDSYTMLIHGLCEKQKWKEA-CQYFVEMIE  253 (307)
Q Consensus       224 ~~~~~~~li~~~~~~g~~~~a-~~~~~~~~~  253 (307)
                      -..+|..+..+|...|++++| ...+++...
T Consensus       235 ~~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~  265 (293)
T 2qfc_A          235 IGQLYYQRGECLRKLEYEEAEIEDAYKKASF  265 (293)
T ss_dssp             HHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCcHHHHHHHHHHHHH
Confidence            145677888888888888888 666776653

>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A

Probab=98.97  E-value=8.1e-08  Score=68.09  Aligned_cols=132  Identities=14%  Similarity=0.030  Sum_probs=107.4

Q ss_pred             chhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHhcCCChhHHHHHHHHHhhcCCCCccHHHHHHHH
Q 021791          118 TVATYTSVVKCLCSCGRIEDAEELLGEMVRNGVSPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDDLCVPNIHTYNILI  197 (307)
Q Consensus       118 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~  197 (307)
                      ....+..+...+...|++++|...|++....... +..++..+...+...|++++|...+.+.....  +.+...+..+.
T Consensus        12 ~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~a   88 (166)
T 1a17_A           12 RAEELKTQANDYFKAKDYENAIKFYSQAIELNPS-NAIYYGNRSLAYLRTECYGYALGDATRAIELD--KKYIKGYYRRA   88 (166)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--cccHHHHHHHH
Confidence            3556788888999999999999999999886543 68889999999999999999999999999875  56788999999


Q ss_pred             HHHHhcCcHHHHHHHHHHHhhCCCCCCHHhHHHH--HHHHHccCcHHHHHHHHHHHHH
Q 021791          198 GMFMALNRMDMVREIWNHVKGSELGLDLDSYTML--IHGLCEKQKWKEACQYFVEMIE  253 (307)
Q Consensus       198 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l--i~~~~~~g~~~~a~~~~~~~~~  253 (307)
                      ..+...|++++|...++........ +...+..+  ...+...|++++|+..+.+...
T Consensus        89 ~~~~~~~~~~~A~~~~~~a~~~~p~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~  145 (166)
T 1a17_A           89 ASNMALGKFRAALRDYETVVKVKPH-DKDAKMKYQECNKIVKQKAFERAIAGDEHKRS  145 (166)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHhccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHHHHHHHHcccchHH
Confidence            9999999999999999999876432 44455333  3336677888888887776543

>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}

Probab=98.95  E-value=1.7e-08  Score=72.67  Aligned_cols=120  Identities=13%  Similarity=0.195  Sum_probs=65.5

Q ss_pred             hcCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHhcCCChhHHHHHHHHHhhcCCCCccHHHHHHHHHH-HHhcCcH--H
Q 021791          131 SCGRIEDAEELLGEMVRNGVSPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDDLCVPNIHTYNILIGM-FMALNRM--D  207 (307)
Q Consensus       131 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~--~  207 (307)
                      ..|++++|...+++...... .+...+..+...|...|++++|...+++.....  +.+...+..+..+ +...|++  +
T Consensus        22 ~~~~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~la~~l~~~~~~~~~~   98 (177)
T 2e2e_A           22 SQQNPEAQLQALQDKIRANP-QNSEQWALLGEYYLWQNDYSNSLLAYRQALQLR--GENAELYAALATVLYYQASQHMTA   98 (177)
T ss_dssp             -----CCCCHHHHHHHHHCC-SCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH--CSCHHHHHHHHHHHHHHTTTCCCH
T ss_pred             hccCHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--CCCHHHHHHHHHHHHHhcCCcchH
Confidence            34555555555555554432 244555555566666666666666666655543  3445555555555 5556665  6


Q ss_pred             HHHHHHHHHhhCCCCCCHHhHHHHHHHHHccCcHHHHHHHHHHHHHc
Q 021791          208 MVREIWNHVKGSELGLDLDSYTMLIHGLCEKQKWKEACQYFVEMIEK  254 (307)
Q Consensus       208 ~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~  254 (307)
                      +|...++.+..... .+...+..+..++...|++++|...|+++.+.
T Consensus        99 ~A~~~~~~al~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  144 (177)
T 2e2e_A           99 QTRAMIDKALALDS-NEITALMLLASDAFMQANYAQAIELWQKVMDL  144 (177)
T ss_dssp             HHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHhCC-CcHHHHHHHHHHHHHcccHHHHHHHHHHHHhh
Confidence            66666666655432 24555556666666666666666666666654

>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}

Probab=98.95  E-value=4.9e-08  Score=66.05  Aligned_cols=60  Identities=10%  Similarity=0.009  Sum_probs=22.2

Q ss_pred             hHHHHHHHHhcCCChhHHHHHHHHHhhcCCCCccHHHHHHHHHHHHhcCcHHHHHHHHHHHh
Q 021791          156 TYNCFFKEYRGRKDANGAMKLYRQMKEDDLCVPNIHTYNILIGMFMALNRMDMVREIWNHVK  217 (307)
Q Consensus       156 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~  217 (307)
                      .|..+..+|.+.|++++|+..+++..+.+  +.+...|..+..++...|++++|.+.|+...
T Consensus        49 ~~~~~~~~~~~~~~~~~A~~~~~~al~~~--p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al  108 (126)
T 4gco_A           49 LYSNRAACLTKLMEFQRALDDCDTCIRLD--SKFIKGYIRKAACLVAMREWSKAQRAYEDAL  108 (126)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHhhHHHhhccHHHHHHHHHHHHHhh--hhhhHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence            33333333333333333333333333332  2233333333333333333333333333333

>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}

Probab=98.95  E-value=3.5e-07  Score=71.63  Aligned_cols=169  Identities=9%  Similarity=0.020  Sum_probs=125.6

Q ss_pred             hhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCH-----hhHHHHHHHHhcCCChhHHHHHHHHHhhcCCC--Ccc--
Q 021791          119 VATYTSVVKCLCSCGRIEDAEELLGEMVRNGVSPSA-----ETYNCFFKEYRGRKDANGAMKLYRQMKEDDLC--VPN--  189 (307)
Q Consensus       119 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~-----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--~~~--  189 (307)
                      ...+...+..+...|++++|.+.+++..+.......     ..+..+...+...|++++|...+.+.......  .+.  
T Consensus        75 ~~~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~  154 (293)
T 2qfc_A           75 KKQFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQN  154 (293)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHH
T ss_pred             HHHHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHH
Confidence            345566778889999999999999988875432111     22344566778889999999999998754210  111  


Q ss_pred             HHHHHHHHHHHHhcCcHHHHHHHHHHHhh---CC-CCC--CHHhHHHHHHHHHccCcHHHHHHHHHHHHHcC----CCC-
Q 021791          190 IHTYNILIGMFMALNRMDMVREIWNHVKG---SE-LGL--DLDSYTMLIHGLCEKQKWKEACQYFVEMIEKG----LLP-  258 (307)
Q Consensus       190 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~-~~~--~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~----~~p-  258 (307)
                      ..+++.+...|...|++++|...+++...   .. ..+  ...++..+..+|...|++++|+..+++.++..    ... 
T Consensus       155 ~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~  234 (293)
T 2qfc_A          155 LYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMAL  234 (293)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSS
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHH
Confidence            45889999999999999999999998772   21 111  12578899999999999999999999987542    111 


Q ss_pred             cHhhHHHHHHHHhhchhHHHH-HHHHHHhh
Q 021791          259 QKVTFETLYRGLIQSDMLRTW-RRLKKKLD  287 (307)
Q Consensus       259 ~~~~~~~l~~~~~~~g~~~~a-~~~~~~~~  287 (307)
                      -..+|..+...+...|+.++| ...+++..
T Consensus       235 ~~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al  264 (293)
T 2qfc_A          235 IGQLYYQRGECLRKLEYEEAEIEDAYKKAS  264 (293)
T ss_dssp             HHHHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCcHHHHHHHHHHHH
Confidence            156788888999999999999 77676643

>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A

Probab=98.94  E-value=1.3e-07  Score=66.05  Aligned_cols=98  Identities=9%  Similarity=0.056  Sum_probs=71.0

Q ss_pred             HhhHHHHHHHHhcCCChhHHHHHHHHHhhcCCCCccHHHHHHHHHHHHhcCcHHHHHHHHHHHhhCCCCCCHHhHHHHHH
Q 021791          154 AETYNCFFKEYRGRKDANGAMKLYRQMKEDDLCVPNIHTYNILIGMFMALNRMDMVREIWNHVKGSELGLDLDSYTMLIH  233 (307)
Q Consensus       154 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~  233 (307)
                      ...+..+...+.+.|++++|...|++.....  +.+...|..+..++...|++++|...|++....... +...|..+..
T Consensus        36 ~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~--P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~-~~~~~~~lg~  112 (151)
T 3gyz_A           36 MDDIYSYAYDFYNKGRIEEAEVFFRFLCIYD--FYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKN-DYTPVFHTGQ  112 (151)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSS-CCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCC-CcHHHHHHHH
Confidence            3456666667777777777777777777765  556777777777777777777777777777766432 5667777777


Q ss_pred             HHHccCcHHHHHHHHHHHHHc
Q 021791          234 GLCEKQKWKEACQYFVEMIEK  254 (307)
Q Consensus       234 ~~~~~g~~~~a~~~~~~~~~~  254 (307)
                      +|...|++++|...|++.++.
T Consensus       113 ~~~~lg~~~eA~~~~~~al~l  133 (151)
T 3gyz_A          113 CQLRLKAPLKAKECFELVIQH  133 (151)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHcCCHHHHHHHHHHHHHh
Confidence            777777777777777777765

>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}

Probab=98.93  E-value=6.2e-08  Score=65.53  Aligned_cols=110  Identities=11%  Similarity=0.015  Sum_probs=94.5

Q ss_pred             HHHHHHHHHHHHhcCCchhHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHhhHHHHHHH
Q 021791           84 VTSFSIVLHVYSRAHKPQLSLDKLNFMKEKGICPTVATYTSVVKCLCSCGRIEDAEELLGEMVRNGVSPSAETYNCFFKE  163 (307)
Q Consensus        84 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~  163 (307)
                      ...+......+.+.|++++|++.|++..+.... +..+|..+..+|.+.|++++|+..+++..+.+.. +...|..+..+
T Consensus        13 a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~-~~~a~~~lg~~   90 (126)
T 4gco_A           13 AQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPE-NAILYSNRAACLTKLMEFQRALDDCDTCIRLDSK-FIKGYIRKAAC   90 (126)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhh-hhHHHHHHHHH
Confidence            346778889999999999999999999887543 7889999999999999999999999999987544 68889999999


Q ss_pred             HhcCCChhHHHHHHHHHhhcCCCCccHHHHHHHH
Q 021791          164 YRGRKDANGAMKLYRQMKEDDLCVPNIHTYNILI  197 (307)
Q Consensus       164 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~  197 (307)
                      +...|++++|...|++..+..  |.+......+.
T Consensus        91 ~~~~~~~~~A~~~~~~al~l~--P~~~~a~~~l~  122 (126)
T 4gco_A           91 LVAMREWSKAQRAYEDALQVD--PSNEEAREGVR  122 (126)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHH
T ss_pred             HHHCCCHHHHHHHHHHHHHHC--cCCHHHHHHHH
Confidence            999999999999999999875  55566555544

>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A

Probab=98.93  E-value=8.1e-08  Score=64.35  Aligned_cols=98  Identities=12%  Similarity=0.135  Sum_probs=52.4

Q ss_pred             HHHHHHHHHHHHhcCCchhHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHhhHHHHHHH
Q 021791           84 VTSFSIVLHVYSRAHKPQLSLDKLNFMKEKGICPTVATYTSVVKCLCSCGRIEDAEELLGEMVRNGVSPSAETYNCFFKE  163 (307)
Q Consensus        84 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~  163 (307)
                      ...+..+...+...|++++|.+.++++.+... .+..++..+...+...|++++|...++++..... .+..++..+...
T Consensus         9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~la~~   86 (125)
T 1na0_A            9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDP-NNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDP-NNAEAWYNLGNA   86 (125)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCc-CcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCC-ccHHHHHHHHHH
Confidence            34455555555566666666666655554432 2444555555555555566666555555554422 244455555555


Q ss_pred             HhcCCChhHHHHHHHHHhhc
Q 021791          164 YRGRKDANGAMKLYRQMKED  183 (307)
Q Consensus       164 ~~~~~~~~~a~~~~~~~~~~  183 (307)
                      +...|++++|...++++...
T Consensus        87 ~~~~~~~~~A~~~~~~~~~~  106 (125)
T 1na0_A           87 YYKQGDYDEAIEYYQKALEL  106 (125)
T ss_dssp             HHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHhcCHHHHHHHHHHHHHh
Confidence            55555555555555555544

>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A

Probab=98.91  E-value=9.3e-08  Score=64.04  Aligned_cols=96  Identities=16%  Similarity=0.189  Sum_probs=44.7

Q ss_pred             hhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHhcCCChhHHHHHHHHHhhcCCCCccHHHHHHHHHH
Q 021791          120 ATYTSVVKCLCSCGRIEDAEELLGEMVRNGVSPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDDLCVPNIHTYNILIGM  199 (307)
Q Consensus       120 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~  199 (307)
                      ..+..+...+...|++++|...++++..... .+..++..+...+...|++++|...++++....  +.+..++..+...
T Consensus        10 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~la~~   86 (125)
T 1na0_A           10 EAWYNLGNAYYKQGDYDEAIEYYQKALELDP-NNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD--PNNAEAWYNLGNA   86 (125)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCc-CcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC--CccHHHHHHHHHH
Confidence            3444444555555555555555555544321 133444444444445555555555554444432  2334444444444


Q ss_pred             HHhcCcHHHHHHHHHHHhh
Q 021791          200 FMALNRMDMVREIWNHVKG  218 (307)
Q Consensus       200 ~~~~~~~~~a~~~~~~~~~  218 (307)
                      +...|++++|...++.+..
T Consensus        87 ~~~~~~~~~A~~~~~~~~~  105 (125)
T 1na0_A           87 YYKQGDYDEAIEYYQKALE  105 (125)
T ss_dssp             HHHTTCHHHHHHHHHHHHH
T ss_pred             HHHhcCHHHHHHHHHHHHH
Confidence            4444444444444444443

>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}

Probab=98.91  E-value=8.7e-08  Score=65.09  Aligned_cols=116  Identities=11%  Similarity=0.008  Sum_probs=63.8

Q ss_pred             CHHHHHHHHHHHHhcCCchhHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHhhHHHHHH
Q 021791           83 DVTSFSIVLHVYSRAHKPQLSLDKLNFMKEKGICPTVATYTSVVKCLCSCGRIEDAEELLGEMVRNGVSPSAETYNCFFK  162 (307)
Q Consensus        83 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~  162 (307)
                      +...+..+...+...|++++|...+++..+... .+...+..+...+...|++++|...+++....... +...+..+..
T Consensus        15 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~la~   92 (133)
T 2lni_A           15 LALMVKNKGNECFQKGDYPQAMKHYTEAIKRNP-KDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPT-FIKGYTRKAA   92 (133)
T ss_dssp             HHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCT-TCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-CcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCC-chHHHHHHHH
Confidence            444555666666666666666666666655432 24555555666666666666666666665554322 4455555555


Q ss_pred             HHhcCCChhHHHHHHHHHhhcCCCCccHHHHHHHHHHHHh
Q 021791          163 EYRGRKDANGAMKLYRQMKEDDLCVPNIHTYNILIGMFMA  202 (307)
Q Consensus       163 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~  202 (307)
                      .+...|++++|...+++.....  +.+...+..+...+..
T Consensus        93 ~~~~~~~~~~A~~~~~~~~~~~--p~~~~~~~~l~~~~~~  130 (133)
T 2lni_A           93 ALEAMKDYTKAMDVYQKALDLD--SSCKEAADGYQRCMMA  130 (133)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHC--GGGTHHHHHHHHHHHH
T ss_pred             HHHHHhhHHHHHHHHHHHHHhC--CCchHHHHHHHHHHHH
Confidence            5666666666666666555543  2333444444444433

>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}

Probab=98.91  E-value=2.4e-08  Score=73.48  Aligned_cols=159  Identities=9%  Similarity=-0.023  Sum_probs=103.7

Q ss_pred             HhcCCchhHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCChHHHHHHHHHHHhC----CCC-CCHhhHHHHHHHHhcCCC
Q 021791           95 SRAHKPQLSLDKLNFMKEKGICPTVATYTSVVKCLCSCGRIEDAEELLGEMVRN----GVS-PSAETYNCFFKEYRGRKD  169 (307)
Q Consensus        95 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~----~~~-~~~~~~~~l~~~~~~~~~  169 (307)
                      ...|++++|.+.++.+.. .......++..+...+...|++++|...+++....    +.. ....++..+...+...|+
T Consensus         3 ~~~g~~~~A~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~   81 (203)
T 3gw4_A            3 FEAHDYALAERQAQALLA-HPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGN   81 (203)
T ss_dssp             ----CHHHHHHHHHHHHT-STTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTC
T ss_pred             cccccHHHHHHHHHHhcC-ChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCC
Confidence            457888888885555433 22235667788888888888888888888877652    111 124566777778888888


Q ss_pred             hhHHHHHHHHHhhc---CCCC--ccHHHHHHHHHHHHhcCcHHHHHHHHHHHhhCCC-CCC----HHhHHHHHHHHHccC
Q 021791          170 ANGAMKLYRQMKED---DLCV--PNIHTYNILIGMFMALNRMDMVREIWNHVKGSEL-GLD----LDSYTMLIHGLCEKQ  239 (307)
Q Consensus       170 ~~~a~~~~~~~~~~---~~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~----~~~~~~li~~~~~~g  239 (307)
                      +++|...+.+....   ....  ....++..+...+...|++++|...+++...... ..+    ..++..+...+...|
T Consensus        82 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g  161 (203)
T 3gw4_A           82 WDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEK  161 (203)
T ss_dssp             HHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCc
Confidence            88888888876654   1001  1234567777788888888888888877653210 012    223566777778888


Q ss_pred             cHHHHHHHHHHHHHc
Q 021791          240 KWKEACQYFVEMIEK  254 (307)
Q Consensus       240 ~~~~a~~~~~~~~~~  254 (307)
                      ++++|...+++..+.
T Consensus       162 ~~~~A~~~~~~al~~  176 (203)
T 3gw4_A          162 NLLEAQQHWLRARDI  176 (203)
T ss_dssp             CHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHH
Confidence            888888888877665

>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A

Probab=98.90  E-value=2.6e-07  Score=64.49  Aligned_cols=98  Identities=14%  Similarity=0.034  Sum_probs=69.1

Q ss_pred             hhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHhcCCChhHHHHHHHHHhhcCCCCccHHHHHHHHH
Q 021791          119 VATYTSVVKCLCSCGRIEDAEELLGEMVRNGVSPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDDLCVPNIHTYNILIG  198 (307)
Q Consensus       119 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~  198 (307)
                      ...+..+...+.+.|++++|...|++.....+. +...|..+..+|...|++++|...|++.....  +.+...|..+..
T Consensus        36 ~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~-~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~--P~~~~~~~~lg~  112 (151)
T 3gyz_A           36 MDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFY-NVDYIMGLAAIYQIKEQFQQAADLYAVAFALG--KNDYTPVFHTGQ  112 (151)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--SSCCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC--CCCcHHHHHHHH
Confidence            445666666777777777777777777765433 56677777777777777777777777777665  455667777777


Q ss_pred             HHHhcCcHHHHHHHHHHHhhC
Q 021791          199 MFMALNRMDMVREIWNHVKGS  219 (307)
Q Consensus       199 ~~~~~~~~~~a~~~~~~~~~~  219 (307)
                      +|...|++++|...|+.....
T Consensus       113 ~~~~lg~~~eA~~~~~~al~l  133 (151)
T 3gyz_A          113 CQLRLKAPLKAKECFELVIQH  133 (151)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHcCCHHHHHHHHHHHHHh
Confidence            777777777777777777665

>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}

Probab=98.89  E-value=8.4e-08  Score=65.17  Aligned_cols=97  Identities=11%  Similarity=0.053  Sum_probs=47.8

Q ss_pred             hhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHhcCCChhHHHHHHHHHhhcCCCCccHHHHHHHHH
Q 021791          119 VATYTSVVKCLCSCGRIEDAEELLGEMVRNGVSPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDDLCVPNIHTYNILIG  198 (307)
Q Consensus       119 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~  198 (307)
                      ...+..+...+...|++++|...|++....... +...+..+...+...|++++|...+++..+..  +.+...+..+..
T Consensus        16 ~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~la~   92 (133)
T 2lni_A           16 ALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPK-DAKLYSNRAACYTKLLEFQLALKDCEECIQLE--PTFIKGYTRKAA   92 (133)
T ss_dssp             HHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTT-CHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-cHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC--CCchHHHHHHHH
Confidence            444455555555555555555555555543221 34444555555555555555555555554443  333444444444


Q ss_pred             HHHhcCcHHHHHHHHHHHhh
Q 021791          199 MFMALNRMDMVREIWNHVKG  218 (307)
Q Consensus       199 ~~~~~~~~~~a~~~~~~~~~  218 (307)
                      .+...|++++|.+.++....
T Consensus        93 ~~~~~~~~~~A~~~~~~~~~  112 (133)
T 2lni_A           93 ALEAMKDYTKAMDVYQKALD  112 (133)
T ss_dssp             HHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHhhHHHHHHHHHHHHH
Confidence            55555555555555544443

>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1

Probab=98.88  E-value=9.7e-08  Score=64.54  Aligned_cols=118  Identities=9%  Similarity=-0.018  Sum_probs=63.1

Q ss_pred             HHHHHHHHHHHHhcCCchhHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHhhHHHHHHH
Q 021791           84 VTSFSIVLHVYSRAHKPQLSLDKLNFMKEKGICPTVATYTSVVKCLCSCGRIEDAEELLGEMVRNGVSPSAETYNCFFKE  163 (307)
Q Consensus        84 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~  163 (307)
                      ...+..+...+...|++++|...++...+... .+...+..+...+...|++++|...+++....... +...+..+...
T Consensus        12 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~   89 (131)
T 2vyi_A           12 AERLKTEGNEQMKVENFEAAVHFYGKAIELNP-ANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPA-YSKAYGRMGLA   89 (131)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHccCHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCcc-CHHHHHHHHHH
Confidence            34455555556666666666666666555432 24455555555666666666666666655554222 34455555555


Q ss_pred             HhcCCChhHHHHHHHHHhhcCCCCccHHHHHHHHHHHHhcCc
Q 021791          164 YRGRKDANGAMKLYRQMKEDDLCVPNIHTYNILIGMFMALNR  205 (307)
Q Consensus       164 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~  205 (307)
                      +...|++++|...+++.....  +.+...+..+..++...|+
T Consensus        90 ~~~~~~~~~A~~~~~~~~~~~--p~~~~~~~~l~~~~~~~~~  129 (131)
T 2vyi_A           90 LSSLNKHVEAVAYYKKALELD--PDNETYKSNLKIAELKLRE  129 (131)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHS--TTCHHHHHHHHHHHHHHTT
T ss_pred             HHHhCCHHHHHHHHHHHHhcC--ccchHHHHHHHHHHHHHhc
Confidence            555566666665555555543  3344444455444444443

>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}

Probab=98.88  E-value=5.7e-08  Score=69.94  Aligned_cols=120  Identities=11%  Similarity=0.083  Sum_probs=71.2

Q ss_pred             hcCCchhHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHhhHHHHHHH-HhcCCCh--hH
Q 021791           96 RAHKPQLSLDKLNFMKEKGICPTVATYTSVVKCLCSCGRIEDAEELLGEMVRNGVSPSAETYNCFFKE-YRGRKDA--NG  172 (307)
Q Consensus        96 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~--~~  172 (307)
                      ..|++++|...++...+... .+...+..+...|...|++++|...|++....... +...+..+..+ +...|++  ++
T Consensus        22 ~~~~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~la~~l~~~~~~~~~~~   99 (177)
T 2e2e_A           22 SQQNPEAQLQALQDKIRANP-QNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGE-NAELYAALATVLYYQASQHMTAQ   99 (177)
T ss_dssp             -----CCCCHHHHHHHHHCC-SCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCS-CHHHHHHHHHHHHHHTTTCCCHH
T ss_pred             hccCHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHhcCCcchHH
Confidence            34556666666666655432 25556666666666666666666666666654322 45555555555 5566666  66


Q ss_pred             HHHHHHHHhhcCCCCccHHHHHHHHHHHHhcCcHHHHHHHHHHHhhC
Q 021791          173 AMKLYRQMKEDDLCVPNIHTYNILIGMFMALNRMDMVREIWNHVKGS  219 (307)
Q Consensus       173 a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~  219 (307)
                      |...+++.....  +.+...+..+...+...|++++|...++.+...
T Consensus       100 A~~~~~~al~~~--p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  144 (177)
T 2e2e_A          100 TRAMIDKALALD--SNEITALMLLASDAFMQANYAQAIELWQKVMDL  144 (177)
T ss_dssp             HHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHhC--CCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhh
Confidence            777766666654  445566666666666777777777777666654

>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A

Probab=98.88  E-value=8.9e-08  Score=76.55  Aligned_cols=151  Identities=11%  Similarity=-0.017  Sum_probs=102.3

Q ss_pred             CchhHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCC--------------HhhHHHHHHHH
Q 021791           99 KPQLSLDKLNFMKEKGICPTVATYTSVVKCLCSCGRIEDAEELLGEMVRNGVSPS--------------AETYNCFFKEY  164 (307)
Q Consensus        99 ~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~--------------~~~~~~l~~~~  164 (307)
                      ++++|...++...+... -+...+..+...|.+.|++++|...|++.........              ...|..+..+|
T Consensus       128 ~~~~A~~~~~~a~~~~p-~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~  206 (336)
T 1p5q_A          128 SFEKAKESWEMNSEEKL-EQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCH  206 (336)
T ss_dssp             EEECCCCGGGCCHHHHH-HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ecccccchhcCCHHHHH-HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHH
Confidence            34445544443332211 1455677777888888888888888888777543321              46777777778


Q ss_pred             hcCCChhHHHHHHHHHhhcCCCCccHHHHHHHHHHHHhcCcHHHHHHHHHHHhhCCCCCCHHhHHHHHHHHHccCcHHHH
Q 021791          165 RGRKDANGAMKLYRQMKEDDLCVPNIHTYNILIGMFMALNRMDMVREIWNHVKGSELGLDLDSYTMLIHGLCEKQKWKEA  244 (307)
Q Consensus       165 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a  244 (307)
                      .+.|++++|...+++.....  +.+...+..+..++...|++++|...|+.+..... -+...+..+..++...|++++|
T Consensus       207 ~~~g~~~~A~~~~~~al~~~--p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P-~~~~a~~~l~~~~~~~~~~~~a  283 (336)
T 1p5q_A          207 LKLQAFSAAIESCNKALELD--SNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYP-NNKAAKTQLAVCQQRIRRQLAR  283 (336)
T ss_dssp             HHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCS-SCHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHcCCHHHHHHHHHHHHHhC--CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHHHHHHHH
Confidence            88888888888888877765  55677777778888888888888888877776542 2566777777777777777777


Q ss_pred             -HHHHHHHHH
Q 021791          245 -CQYFVEMIE  253 (307)
Q Consensus       245 -~~~~~~~~~  253 (307)
                       ...++.|.+
T Consensus       284 ~~~~~~~~~~  293 (336)
T 1p5q_A          284 EKKLYANMFE  293 (336)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHH
Confidence             445555543

>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*

Probab=98.86  E-value=7.9e-07  Score=70.41  Aligned_cols=219  Identities=10%  Similarity=0.006  Sum_probs=164.0

Q ss_pred             HHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcC-CchhHHHHHHHHHHcCCCCchhhHHHHHHHHHhc-C-ChHHHHHH
Q 021791           65 IRNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAH-KPQLSLDKLNFMKEKGICPTVATYTSVVKCLCSC-G-RIEDAEEL  141 (307)
Q Consensus        65 ~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~-~-~~~~a~~~  141 (307)
                      .++|+++++.+.... +-+..+|+.--..+...| ++++++++++.+.....+ +..+|+.-...+.+. + ++++++++
T Consensus        70 se~AL~lt~~~L~~n-P~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPK-ny~aW~hR~wlL~~l~~~~~~~EL~~  147 (349)
T 3q7a_A           70 SERALELTEIIVRMN-PAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLK-SYQVWHHRLLLLDRISPQDPVSEIEY  147 (349)
T ss_dssp             SHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCC-CHHHHHHHHHHHHHHCCSCCHHHHHH
T ss_pred             CHHHHHHHHHHHHhC-chhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHhcCCChHHHHHH
Confidence            367999999998874 336677888888888888 599999999999988655 777888877777776 7 88999999


Q ss_pred             HHHHHhCCCCCCHhhHHHHHHHHhcCCChh--------HHHHHHHHHhhcCCCCccHHHHHHHHHHHHhcCc-------H
Q 021791          142 LGEMVRNGVSPSAETYNCFFKEYRGRKDAN--------GAMKLYRQMKEDDLCVPNIHTYNILIGMFMALNR-------M  206 (307)
Q Consensus       142 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~--------~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-------~  206 (307)
                      ++.+.+...+ +..+|+.-.....+.+.++        ++++.++++.+.+  +-|...|+.....+.+.+.       +
T Consensus       148 ~~k~L~~dpk-Ny~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~d--p~N~SAW~~R~~lL~~l~~~~~~~~~~  224 (349)
T 3q7a_A          148 IHGSLLPDPK-NYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVD--GRNNSAWGWRWYLRVSRPGAETSSRSL  224 (349)
T ss_dssp             HHHHTSSCTT-CHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHTTSTTCCCCHHHH
T ss_pred             HHHHHHhCCC-CHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHhccccccchHHH
Confidence            9999987655 7778776655555555555        8999999998886  6788999988888888776       6


Q ss_pred             HHHHHHHHHHhhCCCCCCHHhHHHHHHHHHccCcH--------------------HHHHHHHHHHHHcC-----CCCcHh
Q 021791          207 DMVREIWNHVKGSELGLDLDSYTMLIHGLCEKQKW--------------------KEACQYFVEMIEKG-----LLPQKV  261 (307)
Q Consensus       207 ~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~--------------------~~a~~~~~~~~~~~-----~~p~~~  261 (307)
                      +++++.++........ |...|+.+-..+.+.|+.                    ........++...+     -.+++.
T Consensus       225 ~eELe~~~~aI~~~P~-n~SaW~Ylr~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~  303 (349)
T 3q7a_A          225 QDELIYILKSIHLIPH-NVSAWNYLRGFLKHFSLPLVPILPAILPYTASKLNPDIETVEAFGFPMPSDPLPEDTPLPVPL  303 (349)
T ss_dssp             HHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCSGGGHHHHGGGTC--------------CCCCC-CCCSSCCSCCHH
T ss_pred             HHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhcCCCcccccccccccccccccccchhHHHHHHHHHhcccccccCCCcHH
Confidence            8888888888876543 777887766666655543                    33333333333321     135777


Q ss_pred             hHHHHHHHHhhchhHHHHHHHHHHhhhc
Q 021791          262 TFETLYRGLIQSDMLRTWRRLKKKLDEE  289 (307)
Q Consensus       262 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~  289 (307)
                      .+..++..|...|+.++|.++++.+.+.
T Consensus       304 al~~l~d~~~~~~~~~~a~~~~~~l~~~  331 (349)
T 3q7a_A          304 ALEYLADSFIEQNRVDDAAKVFEKLSSE  331 (349)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHhh
Confidence            8889999999999999999999998643

>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1

Probab=98.86  E-value=1.1e-07  Score=64.34  Aligned_cols=97  Identities=11%  Similarity=0.026  Sum_probs=46.1

Q ss_pred             hhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHhcCCChhHHHHHHHHHhhcCCCCccHHHHHHHHHH
Q 021791          120 ATYTSVVKCLCSCGRIEDAEELLGEMVRNGVSPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDDLCVPNIHTYNILIGM  199 (307)
Q Consensus       120 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~  199 (307)
                      ..+..+...+...|++++|...+++...... .+...+..+...+...|++++|...+.+.....  +.+...+..+...
T Consensus        13 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~~~~   89 (131)
T 2vyi_A           13 ERLKTEGNEQMKVENFEAAVHFYGKAIELNP-ANAVYFCNRAAAYSKLGNYAGAVQDCERAICID--PAYSKAYGRMGLA   89 (131)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHccCHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcC--ccCHHHHHHHHHH
Confidence            3444444555555555555555555544322 134444444445555555555555555544432  2334444444444


Q ss_pred             HHhcCcHHHHHHHHHHHhhC
Q 021791          200 FMALNRMDMVREIWNHVKGS  219 (307)
Q Consensus       200 ~~~~~~~~~a~~~~~~~~~~  219 (307)
                      +...|++++|...++.....
T Consensus        90 ~~~~~~~~~A~~~~~~~~~~  109 (131)
T 2vyi_A           90 LSSLNKHVEAVAYYKKALEL  109 (131)
T ss_dssp             HHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHhCCHHHHHHHHHHHHhc
Confidence            44455555555544444443

>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*

Probab=98.83  E-value=5.2e-08  Score=67.96  Aligned_cols=98  Identities=10%  Similarity=-0.056  Sum_probs=63.2

Q ss_pred             HhhHHHHHHHHhcCCChhHHHHHHHHHhhcCCCCccHHHHHHHHHHHHhcCcHHHHHHHHHHHhhCCCCCCHHhHHHHHH
Q 021791          154 AETYNCFFKEYRGRKDANGAMKLYRQMKEDDLCVPNIHTYNILIGMFMALNRMDMVREIWNHVKGSELGLDLDSYTMLIH  233 (307)
Q Consensus       154 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~  233 (307)
                      ...+..+...+...|++++|...|+......  +.+...|..+..++...|++++|...++....... .+...+..+..
T Consensus        21 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p-~~~~~~~~lg~   97 (148)
T 2vgx_A           21 LEQLYSLAFNQYQSGXYEDAHXVFQALCVLD--HYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDI-XEPRFPFHAAE   97 (148)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST-TCTHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCChHHHHHHHHHHHHcC--cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC-CCchHHHHHHH
Confidence            3445555666666677777777776666654  45666666666667777777777777776665532 24556666666


Q ss_pred             HHHccCcHHHHHHHHHHHHHc
Q 021791          234 GLCEKQKWKEACQYFVEMIEK  254 (307)
Q Consensus       234 ~~~~~g~~~~a~~~~~~~~~~  254 (307)
                      +|...|++++|...|++.++.
T Consensus        98 ~~~~~g~~~~A~~~~~~al~~  118 (148)
T 2vgx_A           98 CLLQXGELAEAESGLFLAQEL  118 (148)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHcCCHHHHHHHHHHHHHH
Confidence            777777777777777766654

>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A

Probab=98.83  E-value=1.7e-07  Score=74.88  Aligned_cols=132  Identities=11%  Similarity=-0.037  Sum_probs=114.0

Q ss_pred             CHHHHHHHHHHHHhcCCchhHHHHHHHHHHcCCCCc--------------hhhHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 021791           83 DVTSFSIVLHVYSRAHKPQLSLDKLNFMKEKGICPT--------------VATYTSVVKCLCSCGRIEDAEELLGEMVRN  148 (307)
Q Consensus        83 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~--------------~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~  148 (307)
                      +...+..+...+.+.|++++|...|++..+......              ...|..+..+|.+.|++++|...+++..+.
T Consensus       146 ~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~  225 (336)
T 1p5q_A          146 QSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALEL  225 (336)
T ss_dssp             HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence            456788899999999999999999999988754322              588999999999999999999999999987


Q ss_pred             CCCCCHhhHHHHHHHHhcCCChhHHHHHHHHHhhcCCCCccHHHHHHHHHHHHhcCcHHHHH-HHHHHHh
Q 021791          149 GVSPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDDLCVPNIHTYNILIGMFMALNRMDMVR-EIWNHVK  217 (307)
Q Consensus       149 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~-~~~~~~~  217 (307)
                      ... +...+..+..+|...|++++|...|++..+..  +.+...+..+..++...|+.+++. ..++.|.
T Consensus       226 ~p~-~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~--P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~  292 (336)
T 1p5q_A          226 DSN-NEKGLSRRGEAHLAVNDFELARADFQKVLQLY--PNNKAAKTQLAVCQQRIRRQLAREKKLYANMF  292 (336)
T ss_dssp             CTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--SSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCC-cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            543 78899999999999999999999999999886  567888999999999999999884 4566554

>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}

Probab=98.83  E-value=7e-08  Score=70.94  Aligned_cols=156  Identities=10%  Similarity=-0.004  Sum_probs=96.4

Q ss_pred             HHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCchhHHHHHHHHHHc----CCC-CchhhHHHHHHHHHhcCChH
Q 021791           62 EKTIRNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHKPQLSLDKLNFMKEK----GIC-PTVATYTSVVKCLCSCGRIE  136 (307)
Q Consensus        62 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~----~~~-~~~~~~~~ll~~~~~~~~~~  136 (307)
                      .|++++|.+.++.+... .......+..+...+...|++++|...+++..+.    +.. ....++..+...+...|+++
T Consensus         5 ~g~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~   83 (203)
T 3gw4_A            5 AHDYALAERQAQALLAH-PATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNWD   83 (203)
T ss_dssp             --CHHHHHHHHHHHHTS-TTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred             cccHHHHHHHHHHhcCC-hHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCHH
Confidence            56777777754444332 2235567777777777888888888887776552    111 13455667777777888888


Q ss_pred             HHHHHHHHHHhC----CCCC--CHhhHHHHHHHHhcCCChhHHHHHHHHHhhcCCC--Ccc--HHHHHHHHHHHHhcCcH
Q 021791          137 DAEELLGEMVRN----GVSP--SAETYNCFFKEYRGRKDANGAMKLYRQMKEDDLC--VPN--IHTYNILIGMFMALNRM  206 (307)
Q Consensus       137 ~a~~~~~~~~~~----~~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--~~~--~~~~~~l~~~~~~~~~~  206 (307)
                      +|...+++....    +..+  ....+..+...+...|++++|...+++.......  .+.  ..++..+...+...|++
T Consensus        84 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~  163 (203)
T 3gw4_A           84 AARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKNL  163 (203)
T ss_dssp             HHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCH
T ss_pred             HHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCcCH
Confidence            888777776543    1111  1345666677777778888888887776543110  111  22346667777777888


Q ss_pred             HHHHHHHHHHhh
Q 021791          207 DMVREIWNHVKG  218 (307)
Q Consensus       207 ~~a~~~~~~~~~  218 (307)
                      ++|.+.+++...
T Consensus       164 ~~A~~~~~~al~  175 (203)
T 3gw4_A          164 LEAQQHWLRARD  175 (203)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHH
Confidence            887777766554

>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1

Probab=98.81  E-value=1.4e-08  Score=74.64  Aligned_cols=30  Identities=10%  Similarity=-0.077  Sum_probs=18.2

Q ss_pred             hhhHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 021791          119 VATYTSVVKCLCSCGRIEDAEELLGEMVRN  148 (307)
Q Consensus       119 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~  148 (307)
                      ...+..+...+...|++++|...|++....
T Consensus        38 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~   67 (198)
T 2fbn_A           38 AFDIKEEGNEFFKKNEINEAIVKYKEALDF   67 (198)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence            334555566666666666666666666653

>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2

Probab=98.79  E-value=7.4e-08  Score=74.98  Aligned_cols=195  Identities=8%  Similarity=-0.025  Sum_probs=115.8

Q ss_pred             cHHHHHHHHHHHHhcCchhhHHHHHHHHHhcCCCCcHHHHHHHHHHHHhhCCCCcchhhHHHHHHHHHHHHHHHhcCCCC
Q 021791            3 NVKMYTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPNERFEKTIRNAEKVFDEMRVRGIEP   82 (307)
Q Consensus         3 ~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~   82 (307)
                      +...+..+...+...|++++|...|++..... +-+...|..+..++..          .|++++|...+++..+.. +.
T Consensus         3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~----------~~~~~~A~~~~~~al~~~-p~   70 (281)
T 2c2l_A            3 SAQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLK----------MQQPEQALADCRRALELD-GQ   70 (281)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHH----------TTCHHHHHHHHHHHTTSC-TT
T ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHH----------hcCHHHHHHHHHHHHHhC-CC
Confidence            45677778888888888888888888887762 2256677777777777          777888888888887663 33


Q ss_pred             CHHHHHHHHHHHHhcCCchhHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHhhHHHHHH
Q 021791           83 DVTSFSIVLHVYSRAHKPQLSLDKLNFMKEKGICPTVATYTSVVKCLCSCGRIEDAEELLGEMVRNGVSPSAETYNCFFK  162 (307)
Q Consensus        83 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~  162 (307)
                      +...+..+..++...|++++|...|+...+.+.. +...+...+....+.   .++.. +..........+......+ .
T Consensus        71 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~-~~~~~~~~~~~~~~~---~~~~~-~~~~~~~~~~~~~~i~~~l-~  144 (281)
T 2c2l_A           71 SVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKE-QRLNFGDDIPSALRI---AKKKR-WNSIEERRIHQESELHSYL-T  144 (281)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH-TTCCCCSHHHHHHHH---HHHHH-HHHHHHTCCCCCCHHHHHH-H
T ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc-chhhHHHHHHHHHHH---HHHHH-HHHHHHHHHhhhHHHHHHH-H
Confidence            6677788888888888888888888777654211 111111111111111   11111 1122222233333333333 2


Q ss_pred             HHhcCCChhHHHHHHHHHhhcCCCCccHHHHHHHHHHHHhc-CcHHHHHHHHHHHhh
Q 021791          163 EYRGRKDANGAMKLYRQMKEDDLCVPNIHTYNILIGMFMAL-NRMDMVREIWNHVKG  218 (307)
Q Consensus       163 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~a~~~~~~~~~  218 (307)
                      .+ ..|+.++|.+.++...+..  +.+......+...+.+. +.+++|.++|..+.+
T Consensus       145 ~l-~~~~~~~A~~~~~~al~~~--p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~  198 (281)
T 2c2l_A          145 RL-IAAERERELEECQRNHEGH--EDDGHIRAQQACIEAKHDKYMADMDELFSQVDE  198 (281)
T ss_dssp             HH-HHHHHHHHHTTTSGGGTTT--SCHHHHTHHHHHHHHHHHHHHHHHHHHHHHSSC
T ss_pred             HH-HHHHHHHHHHHHHhhhccc--cchhhhhhHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence            22 2577777777777766653  33444444444444444 567778888876654

>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B

Probab=98.78  E-value=2.1e-05  Score=66.13  Aligned_cols=269  Identities=8%  Similarity=-0.043  Sum_probs=136.2

Q ss_pred             CccHHHHHHHHHHHHhcCc-hhhHHHHHHHHHhc-CCC-CcHHHHHHHHHHHHhhCCCCcchhhHHHHHHHHHHHHHHHh
Q 021791            1 MPNVKMYTSLIYGWCKINR-IDMAERFLGEMIER-GVE-PNVVTYNVLLNGVCRRASLHPNERFEKTIRNAEKVFDEMRV   77 (307)
Q Consensus         1 ~p~~~~~~~li~~~~~~g~-~~~a~~~~~~~~~~-~~~-p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~   77 (307)
                      .|++..|...+....+.+. .+....+|+..+.. |.. ++...|...+.-+....      .-.++++.+.++|++...
T Consensus        44 ~ps~~LW~~Y~~f~~~~~~~~~~i~~~fe~al~~vg~d~~s~~iW~~Yi~f~~~~~------~~~~~~~~vR~iy~rAL~  117 (493)
T 2uy1_A           44 SYNLDLWMLYIEYVRKVSQKKFKLYEVYEFTLGQFENYWDSYGLYKEYIEEEGKIE------DEQTRIEKIRNGYMRALQ  117 (493)
T ss_dssp             CCCHHHHHHHHHHHHHHC----CTHHHHHHHHHHSTTCTTCHHHHHHHHHHTSSCS------SHHHHHHHHHHHHHHHHT
T ss_pred             CCCHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHcCCCcccHHHHHHHHHHHHhch------hhhHHHHHHHHHHHHHHh
Confidence            3777778777777777663 45667777777654 432 35566666665433210      005677788888888876


Q ss_pred             cCCCCCHHHH------------------------------------------------HHHHHHHHhc--CC-----chh
Q 021791           78 RGIEPDVTSF------------------------------------------------SIVLHVYSRA--HK-----PQL  102 (307)
Q Consensus        78 ~~~~~~~~~~------------------------------------------------~~ll~~~~~~--~~-----~~~  102 (307)
                      .....-...|                                                ...+..-...  |-     .+.
T Consensus       118 ~P~~~~~~lw~~Y~~fE~~~~~~~~~~~~~~~~~~y~~ar~~y~~~~~~~~~~s~~~W~~y~~~E~~~~~~~~~~~~~~R  197 (493)
T 2uy1_A          118 TPMGSLSELWKDFENFELELNKITGKKIVGDTLPIFQSSFQRYQQIQPLIRGWSVKNAARLIDLEMENGMKLGGRPHESR  197 (493)
T ss_dssp             SCCTTHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSHHHHHHHHHHHHTCTTCCCHHHHHHH
T ss_pred             ChhhhHHHHHHHHHHHHHHhccccHHHHHHHHhHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHhcCCccCcchhhHHH
Confidence            3211111111                                                1111111111  00     123


Q ss_pred             HHHHHHHHHHcCCCCchhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHhhHH------------------------
Q 021791          103 SLDKLNFMKEKGICPTVATYTSVVKCLCSCGRIEDAEELLGEMVRNGVSPSAETYN------------------------  158 (307)
Q Consensus       103 a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~------------------------  158 (307)
                      +..+|+++.... +.+...|...+..+.+.|+++.|..++++....  +.+...+.                        
T Consensus       198 v~~~ye~al~~~-p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~--P~~~~l~~~y~~~~e~~~~~~~l~~~~~~~~~  274 (493)
T 2uy1_A          198 MHFIHNYILDSF-YYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM--SDGMFLSLYYGLVMDEEAVYGDLKRKYSMGEA  274 (493)
T ss_dssp             HHHHHHHHHHHT-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCSSHHHHHHHHHTTCTHHHHHHHHHTC----
T ss_pred             HHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC--CCcHHHHHHHHhhcchhHHHHHHHHHHHhhcc
Confidence            456677766653 335677777788888889999999999988876  22322221                        


Q ss_pred             ----------------HHHHHHhcCCChhHHHHHHHHHhhcCCCCccHHHHHHHHHHHHhc-CcHHHHHHHHHHHhhCCC
Q 021791          159 ----------------CFFKEYRGRKDANGAMKLYRQMKEDDLCVPNIHTYNILIGMFMAL-NRMDMVREIWNHVKGSEL  221 (307)
Q Consensus       159 ----------------~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~a~~~~~~~~~~~~  221 (307)
                                      ..+....+.++.+.|..+|... ...  ..+..+|......-... ++.+.|..+|+...+.. 
T Consensus       275 ~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~~--~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~-  350 (493)
T 2uy1_A          275 ESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIEL-GNE--GVGPHVFIYCAFIEYYATGSRATPYNIFSSGLLKH-  350 (493)
T ss_dssp             ------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-TTS--CCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHC-
T ss_pred             chhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-hCC--CCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC-
Confidence                            1111122234455555555555 211  12222332211111111 24555666665555432 


Q ss_pred             CCCHHhHHHHHHHHHccCcHHHHHHHHHHHHHcCCCCcHhhHHHHHHHHhhchhHHHHHHHHHHhh
Q 021791          222 GLDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLD  287 (307)
Q Consensus       222 ~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~  287 (307)
                      +-+...+...++...+.|+.+.|..+|+++.     .....|...+.--...|+.+.+..++++..
T Consensus       351 ~~~~~~~~~yid~e~~~~~~~~aR~l~er~~-----k~~~lw~~~~~fE~~~G~~~~~r~v~~~~~  411 (493)
T 2uy1_A          351 PDSTLLKEEFFLFLLRIGDEENARALFKRLE-----KTSRMWDSMIEYEFMVGSMELFRELVDQKM  411 (493)
T ss_dssp             TTCHHHHHHHHHHHHHHTCHHHHHHHHHHSC-----CBHHHHHHHHHHHHHHSCHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH-----HHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence            1123334444444455555566666655541     133445555554455566666666665554

>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*

Probab=98.77  E-value=5.3e-08  Score=67.92  Aligned_cols=98  Identities=8%  Similarity=-0.042  Sum_probs=55.4

Q ss_pred             hhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHhcCCChhHHHHHHHHHhhcCCCCccHHHHHHHHH
Q 021791          119 VATYTSVVKCLCSCGRIEDAEELLGEMVRNGVSPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDDLCVPNIHTYNILIG  198 (307)
Q Consensus       119 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~  198 (307)
                      ...+..+...+...|++++|...|++....... +...|..+..+|...|++++|...|++.....  +.+...+..+..
T Consensus        21 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~--p~~~~~~~~lg~   97 (148)
T 2vgx_A           21 LEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHY-DSRFFLGLGACRQAMGQYDLAIHSYSYGAVMD--IXEPRFPFHAAE   97 (148)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--TTCTHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCChHHHHHHHHHHHHcCcc-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC--CCCchHHHHHHH
Confidence            334445555555666666666666655554322 45555555556666666666666666655553  344555555666


Q ss_pred             HHHhcCcHHHHHHHHHHHhhC
Q 021791          199 MFMALNRMDMVREIWNHVKGS  219 (307)
Q Consensus       199 ~~~~~~~~~~a~~~~~~~~~~  219 (307)
                      ++...|++++|.+.|+.....
T Consensus        98 ~~~~~g~~~~A~~~~~~al~~  118 (148)
T 2vgx_A           98 CLLQXGELAEAESGLFLAQEL  118 (148)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHcCCHHHHHHHHHHHHHH
Confidence            666666666666666655543

>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1

Probab=98.75  E-value=8.4e-07  Score=58.60  Aligned_cols=97  Identities=9%  Similarity=-0.085  Sum_probs=51.5

Q ss_pred             HHHHHHHHHHHhcCCchhHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHH
Q 021791           85 TSFSIVLHVYSRAHKPQLSLDKLNFMKEKGICPTVATYTSVVKCLCSCGRIEDAEELLGEMVRNGVSPSAETYNCFFKEY  164 (307)
Q Consensus        85 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~  164 (307)
                      ..+..+...+...|++++|...++...+... .+...+..+...+...|++++|...+++....... +...+..+..++
T Consensus         5 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~a~~~   82 (118)
T 1elw_A            5 NELKEKGNKALSVGNIDDALQCYSEAIKLDP-HNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPD-WGKGYSRKAAAL   82 (118)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcccHHHHHHHHHHHHHHCC-CcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcc-cHHHHHHHHHHH
Confidence            3444555555556666666666655555432 24445555555555555555555555555544322 344555555555


Q ss_pred             hcCCChhHHHHHHHHHhhc
Q 021791          165 RGRKDANGAMKLYRQMKED  183 (307)
Q Consensus       165 ~~~~~~~~a~~~~~~~~~~  183 (307)
                      ...|++++|...+++..+.
T Consensus        83 ~~~~~~~~A~~~~~~~~~~  101 (118)
T 1elw_A           83 EFLNRFEEAKRTYEEGLKH  101 (118)
T ss_dssp             HHTTCHHHHHHHHHHHHTT
T ss_pred             HHHhhHHHHHHHHHHHHHc
Confidence            5555555555555555544

>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}

Probab=98.75  E-value=5.8e-07  Score=68.89  Aligned_cols=196  Identities=12%  Similarity=-0.025  Sum_probs=140.6

Q ss_pred             HHHHHHHHHHHHHHHhcCCCCCHHHHHHH-------HHHHHhcCCchhHHHHHHHHHHcCCCCc----------------
Q 021791           62 EKTIRNAEKVFDEMRVRGIEPDVTSFSIV-------LHVYSRAHKPQLSLDKLNFMKEKGICPT----------------  118 (307)
Q Consensus        62 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l-------l~~~~~~~~~~~a~~~~~~~~~~~~~~~----------------  118 (307)
                      .++...|.+.|.++.+.. +-....|..+       ...+.+.++..+++..+..-.+  +.|+                
T Consensus        19 ~~d~~~A~~~F~~a~~~d-P~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~--l~p~~l~a~~~~~g~y~~~~   95 (282)
T 4f3v_A           19 PMSEARSLDLFTEITNYD-ESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQ--ISMSTLNARIAIGGLYGDIT   95 (282)
T ss_dssp             TTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTT--CCGGGGCCEEECCTTTCCCE
T ss_pred             CCCHHHHHHHHHHHHHhC-hhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhc--CChhhhhhhhccCCcccccc
Confidence            577899999999998874 3367778877       4555555555666555555443  1221                


Q ss_pred             ------hhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHhcCCChhHHHHHHHHHhhcCCCCcc--H
Q 021791          119 ------VATYTSVVKCLCSCGRIEDAEELLGEMVRNGVSPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDDLCVPN--I  190 (307)
Q Consensus       119 ------~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~  190 (307)
                            ......+...+...|++++|.++|+.+...+  |+......+...+.+.+++++|+..|+......  .|.  .
T Consensus        96 ~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~~--p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~--d~~~~~  171 (282)
T 4f3v_A           96 YPVTSPLAITMGFAACEAAQGNYADAMEALEAAPVAG--SEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWP--DKFLAG  171 (282)
T ss_dssp             EECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCTT--CHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCS--CHHHHH
T ss_pred             cccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CchHHHHHHHHHHHHcCCHHHHHHHHHHhhccC--CcccHH
Confidence                  1223456677889999999999999887654  443355566668899999999999998665432  121  3


Q ss_pred             HHHHHHHHHHHhcCcHHHHHHHHHHHhhCCCCCC--HHhHHHHHHHHHccCcHHHHHHHHHHHHHcCCCCcHhhHHHH
Q 021791          191 HTYNILIGMFMALNRMDMVREIWNHVKGSELGLD--LDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETL  266 (307)
Q Consensus       191 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l  266 (307)
                      ..+..+..++...|++++|+..|++.......|.  .........++.+.|+.++|...|+++...  .|+......|
T Consensus       172 ~a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~--~P~~~~~~aL  247 (282)
T 4f3v_A          172 AAGVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTT--HPEPKVAAAL  247 (282)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--SCCHHHHHHH
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCcHHHHHHH
Confidence            4678889999999999999999999985433243  345667777889999999999999999986  4554334333

>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}

Probab=98.75  E-value=5.1e-07  Score=69.20  Aligned_cols=190  Identities=11%  Similarity=-0.103  Sum_probs=140.5

Q ss_pred             hcCCchhHHHHHHHHHHcCCCCchhhHHHH-------HHHHHhcCChHHHHHHHHHHHhCCCCCC---------------
Q 021791           96 RAHKPQLSLDKLNFMKEKGICPTVATYTSV-------VKCLCSCGRIEDAEELLGEMVRNGVSPS---------------  153 (307)
Q Consensus        96 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l-------l~~~~~~~~~~~a~~~~~~~~~~~~~~~---------------  153 (307)
                      ..++...|.+.|.++.+.... ....|..+       ...+.+.++..+++..+..-..  +.|+               
T Consensus        18 ~~~d~~~A~~~F~~a~~~dP~-~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~--l~p~~l~a~~~~~g~y~~~   94 (282)
T 4f3v_A           18 LPMSEARSLDLFTEITNYDES-ACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQ--ISMSTLNARIAIGGLYGDI   94 (282)
T ss_dssp             TTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTT--CCGGGGCCEEECCTTTCCC
T ss_pred             cCCCHHHHHHHHHHHHHhChh-hhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhc--CChhhhhhhhccCCccccc
Confidence            679999999999999988644 66777766       4555555556666655555443  1221               


Q ss_pred             -------HhhHHHHHHHHhcCCChhHHHHHHHHHhhcCCCCccHHHHHHHHHHHHhcCcHHHHHHHHHHHhhCCCCCC--
Q 021791          154 -------AETYNCFFKEYRGRKDANGAMKLYRQMKEDDLCVPNIHTYNILIGMFMALNRMDMVREIWNHVKGSELGLD--  224 (307)
Q Consensus       154 -------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--  224 (307)
                             ......+...+...|++++|.++|..+...+   |+......+...+.+.+++++|+..|+...... .|.  
T Consensus        95 ~~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~~---p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~-d~~~~  170 (282)
T 4f3v_A           95 TYPVTSPLAITMGFAACEAAQGNYADAMEALEAAPVAG---SEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWP-DKFLA  170 (282)
T ss_dssp             EEECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCTT---CHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCS-CHHHH
T ss_pred             ccccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC---CchHHHHHHHHHHHHcCCHHHHHHHHHHhhccC-CcccH
Confidence                   2234456677889999999999999998764   444366777778999999999999998665532 111  


Q ss_pred             HHhHHHHHHHHHccCcHHHHHHHHHHHHHcCCCCc--HhhHHHHHHHHhhchhHHHHHHHHHHhhhcCCC
Q 021791          225 LDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQ--KVTFETLYRGLIQSDMLRTWRRLKKKLDEESIT  292 (307)
Q Consensus       225 ~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~  292 (307)
                      ...+..+-.++...|++++|+..|++.......|.  .........++.+.|+.++|..+|+++......
T Consensus       171 ~~a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~P~  240 (282)
T 4f3v_A          171 GAAGVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTHPE  240 (282)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSCC
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc
Confidence            23677788899999999999999999985433253  335666777899999999999999999776543

>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1

Probab=98.75  E-value=2.9e-08  Score=72.94  Aligned_cols=163  Identities=9%  Similarity=-0.119  Sum_probs=107.1

Q ss_pred             HHHHHHhcCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHhcCCChhHHHHHHHHHhhcCCCCcc--------------H
Q 021791          125 VVKCLCSCGRIEDAEELLGEMVRNGVSPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDDLCVPN--------------I  190 (307)
Q Consensus       125 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~--------------~  190 (307)
                      .+......|+++++.+.|+.-..... .....+..+...+...|++++|...|.+........|+              .
T Consensus        10 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~   88 (198)
T 2fbn_A           10 HSSGRENLYFQGAKKSIYDYTDEEKV-QSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEI   88 (198)
T ss_dssp             ------------CCCSGGGCCHHHHH-HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHH
T ss_pred             hhhhhhhhhhccccCchhhCCHHHHH-HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHH
Confidence            33444555666666666543222111 13456777888899999999999999999876421121              2


Q ss_pred             HHHHHHHHHHHhcCcHHHHHHHHHHHhhCCCCCCHHhHHHHHHHHHccCcHHHHHHHHHHHHHcCCCCcHhhHHHHHHHH
Q 021791          191 HTYNILIGMFMALNRMDMVREIWNHVKGSELGLDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGL  270 (307)
Q Consensus       191 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~  270 (307)
                      .++..+..++...|++++|...++...... +.+...+..+..+|...|++++|...|++.++.. +-+...+..+..++
T Consensus        89 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~  166 (198)
T 2fbn_A           89 SCNLNLATCYNKNKDYPKAIDHASKVLKID-KNNVKALYKLGVANMYFGFLEEAKENLYKAASLN-PNNLDIRNSYELCV  166 (198)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHH
Confidence            788899999999999999999999998874 3378889999999999999999999999998763 33556777777788


Q ss_pred             hhchhHHHHH-HHHHHhhhcC
Q 021791          271 IQSDMLRTWR-RLKKKLDEES  290 (307)
Q Consensus       271 ~~~g~~~~a~-~~~~~~~~~~  290 (307)
                      ...++.+++. ..+..+-..+
T Consensus       167 ~~~~~~~~~~~~~~~~~f~~~  187 (198)
T 2fbn_A          167 NKLKEARKKDKLTFGGMFDKG  187 (198)
T ss_dssp             HHHHHHHC-------------
T ss_pred             HHHHHHHHHHHHHHHHHhccc
Confidence            8888887777 5555554443

>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*

Probab=98.73  E-value=1.4e-05  Score=63.02  Aligned_cols=216  Identities=10%  Similarity=-0.014  Sum_probs=157.0

Q ss_pred             HHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCC----------chhHHHHHHHHHHcCCCCchhhHHHHHHHHHhcC--
Q 021791           66 RNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHK----------PQLSLDKLNFMKEKGICPTVATYTSVVKCLCSCG--  133 (307)
Q Consensus        66 ~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~----------~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~--  133 (307)
                      ++|+++++.+.... +-+...|+.--..+...+.          +++++.+++.+.....+ +..+|+.-...+.+.+  
T Consensus        47 ~eaL~~t~~~L~~n-P~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~PK-ny~aW~hR~wlL~~l~~~  124 (331)
T 3dss_A           47 ESVLELTSQILGAN-PDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPK-SYGTWHHRCWLLSRLPEP  124 (331)
T ss_dssp             HHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHCSSC
T ss_pred             HHHHHHHHHHHHHC-chhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHhccCcc
Confidence            57899999998763 2245556654444443333          57888899998887654 7788888777777877  


Q ss_pred             ChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHhcCCC-hhHHHHHHHHHhhcCCCCccHHHHHHHHHHHHhc---------
Q 021791          134 RIEDAEELLGEMVRNGVSPSAETYNCFFKEYRGRKD-ANGAMKLYRQMKEDDLCVPNIHTYNILIGMFMAL---------  203 (307)
Q Consensus       134 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---------  203 (307)
                      .+++++.+++.+.+...+ |..+|+.-.......|. ++++++.+..+.+.+  +-|...|+.....+...         
T Consensus       125 ~~~~EL~~~~k~l~~dpr-Ny~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~--p~N~SAW~~R~~ll~~l~~~~~~~~~  201 (331)
T 3dss_A          125 NWARELELCARFLEADER-NFHCWDYRRFVAAQAAVAPAEELAFTDSLITRN--FSNYSSWHYRSCLLPQLHPQPDSGPQ  201 (331)
T ss_dssp             CHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC--SCCHHHHHHHHHHHHHHSCCC-----
T ss_pred             cHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHhhhccccccc
Confidence            489999999999988765 88888877777777888 589999999999886  67888888777766655         


Q ss_pred             -----CcHHHHHHHHHHHhhCCCCCCHHhHHHHHHHHHcc-----------CcHHHHHHHHHHHHHcCCCCcHh-hHHHH
Q 021791          204 -----NRMDMVREIWNHVKGSELGLDLDSYTMLIHGLCEK-----------QKWKEACQYFVEMIEKGLLPQKV-TFETL  266 (307)
Q Consensus       204 -----~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~-----------g~~~~a~~~~~~~~~~~~~p~~~-~~~~l  266 (307)
                           +.++++.+.+.......+. |...|+-+-..+.+.           +.++++++.++++++.  .||.. ++..+
T Consensus       202 ~~~~~~~~~eEle~~~~ai~~~P~-d~SaW~Y~r~ll~~~~~~~~~~~~~~~~l~~el~~~~elle~--~pd~~w~l~~~  278 (331)
T 3dss_A          202 GRLPENVLLKELELVQNAFFTDPN-DQSAWFYHRWLLGAGSGRCELSVEKSTVLQSELESCKELQEL--EPENKWCLLTI  278 (331)
T ss_dssp             -CCCHHHHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHSSSCGGGCCHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHH
T ss_pred             cccchHHHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhccCccccchHHHHHHHHHHHHHHHHHhh--CcccchHHHHH
Confidence                 4578899999888876533 777777555555444           4688999999999976  45542 22222


Q ss_pred             ---HHHHhhchhHHHHHHHHHHhhhc
Q 021791          267 ---YRGLIQSDMLRTWRRLKKKLDEE  289 (307)
Q Consensus       267 ---~~~~~~~g~~~~a~~~~~~~~~~  289 (307)
                         ..+....|..+++...+.++.+.
T Consensus       279 ~~~~~~~~~~~~~~~~~~~l~~l~~~  304 (331)
T 3dss_A          279 ILLMRALDPLLYEKETLQYFSTLKAV  304 (331)
T ss_dssp             HHHHHHHCTTTTHHHHHHHHHHHHHH
T ss_pred             HHHHHhhcccccHHHHHHHHHHHHHh
Confidence               22333467778888888888654

>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1

Probab=98.73  E-value=1.1e-06  Score=57.98  Aligned_cols=95  Identities=15%  Similarity=0.072  Sum_probs=44.9

Q ss_pred             hHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHhcCCChhHHHHHHHHHhhcCCCCccHHHHHHHHHHH
Q 021791          121 TYTSVVKCLCSCGRIEDAEELLGEMVRNGVSPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDDLCVPNIHTYNILIGMF  200 (307)
Q Consensus       121 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~  200 (307)
                      .+..+...+...|++++|...+++....... +...+..+...+...|++++|...+++.....  +.+...+..+..++
T Consensus         6 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~a~~~   82 (118)
T 1elw_A            6 ELKEKGNKALSVGNIDDALQCYSEAIKLDPH-NHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLK--PDWGKGYSRKAAAL   82 (118)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcccHHHHHHHHHHHHHHCCC-cHHHHHHHHHHHHhhccHHHHHHHHHHHHHhC--cccHHHHHHHHHHH
Confidence            3444444555555555555555555443221 34444444444455555555555555444442  23344444444444


Q ss_pred             HhcCcHHHHHHHHHHHhh
Q 021791          201 MALNRMDMVREIWNHVKG  218 (307)
Q Consensus       201 ~~~~~~~~a~~~~~~~~~  218 (307)
                      ...|++++|.+.++....
T Consensus        83 ~~~~~~~~A~~~~~~~~~  100 (118)
T 1elw_A           83 EFLNRFEEAKRTYEEGLK  100 (118)
T ss_dssp             HHTTCHHHHHHHHHHHHT
T ss_pred             HHHhhHHHHHHHHHHHHH
Confidence            445555555554444444

>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}

Probab=98.71  E-value=6.5e-07  Score=60.31  Aligned_cols=18  Identities=17%  Similarity=0.043  Sum_probs=6.8

Q ss_pred             HHHhcCChHHHHHHHHHH
Q 021791          128 CLCSCGRIEDAEELLGEM  145 (307)
Q Consensus       128 ~~~~~~~~~~a~~~~~~~  145 (307)
                      .+.+.|++++|...|++.
T Consensus        13 ~~~~~~~~~~A~~~~~~a   30 (126)
T 3upv_A           13 EYFTKSDWPNAVKAYTEM   30 (126)
T ss_dssp             HHHHTTCHHHHHHHHHHH
T ss_pred             HHHHhcCHHHHHHHHHHH
Confidence            333333333333333333

>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}

Probab=98.70  E-value=7.7e-07  Score=59.94  Aligned_cols=98  Identities=16%  Similarity=0.080  Sum_probs=85.2

Q ss_pred             HhhHHHHHHHHhcCCChhHHHHHHHHHhhcCCCCccHHHHHHHHHHHHhcCcHHHHHHHHHHHhhCCCCCCHHhHHHHHH
Q 021791          154 AETYNCFFKEYRGRKDANGAMKLYRQMKEDDLCVPNIHTYNILIGMFMALNRMDMVREIWNHVKGSELGLDLDSYTMLIH  233 (307)
Q Consensus       154 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~  233 (307)
                      ...+..+...+.+.|++++|...|++.....  +.+...|..+..++...|++++|...++....... .+...|..+..
T Consensus         4 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~lg~   80 (126)
T 3upv_A            4 AEEARLEGKEYFTKSDWPNAVKAYTEMIKRA--PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDP-NFVRAYIRKAT   80 (126)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCC-CcHHHHHHHHH
Confidence            4566777888899999999999999998876  66788999999999999999999999999888753 36788899999


Q ss_pred             HHHccCcHHHHHHHHHHHHHc
Q 021791          234 GLCEKQKWKEACQYFVEMIEK  254 (307)
Q Consensus       234 ~~~~~g~~~~a~~~~~~~~~~  254 (307)
                      ++...|++++|...|++.++.
T Consensus        81 ~~~~~~~~~~A~~~~~~al~~  101 (126)
T 3upv_A           81 AQIAVKEYASALETLDAARTK  101 (126)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHhCHHHHHHHHHHHHHh
Confidence            999999999999999998865

>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}

Probab=98.70  E-value=6.7e-07  Score=63.41  Aligned_cols=100  Identities=10%  Similarity=-0.003  Sum_probs=78.3

Q ss_pred             CHHHHHHHHHHHHhcCCchhHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHhhHHHHHH
Q 021791           83 DVTSFSIVLHVYSRAHKPQLSLDKLNFMKEKGICPTVATYTSVVKCLCSCGRIEDAEELLGEMVRNGVSPSAETYNCFFK  162 (307)
Q Consensus        83 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~  162 (307)
                      +...+..+...+...|++++|++.|++..+.... +...|..+..+|.+.|++++|+..|++....... +...|..+..
T Consensus        10 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~   87 (164)
T 3sz7_A           10 ESDKLKSEGNAAMARKEYSKAIDLYTQALSIAPA-NPIYLSNRAAAYSASGQHEKAAEDAELATVVDPK-YSKAWSRLGL   87 (164)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCc-CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-CHHHHHHHHH
Confidence            4566777778888888888888888888776533 6777888888888888888888888888776543 5777888888


Q ss_pred             HHhcCCChhHHHHHHHHHhhcC
Q 021791          163 EYRGRKDANGAMKLYRQMKEDD  184 (307)
Q Consensus       163 ~~~~~~~~~~a~~~~~~~~~~~  184 (307)
                      +|...|++++|...|++..+..
T Consensus        88 ~~~~~g~~~~A~~~~~~al~~~  109 (164)
T 3sz7_A           88 ARFDMADYKGAKEAYEKGIEAE  109 (164)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHH
T ss_pred             HHHHccCHHHHHHHHHHHHHhC
Confidence            8888888888888888877664

>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}

Probab=98.69  E-value=1.3e-06  Score=61.91  Aligned_cols=97  Identities=14%  Similarity=0.039  Sum_probs=52.2

Q ss_pred             hhHHHHHHHHhcCCChhHHHHHHHHHhhcCCCCccHHHHHHHHHHHHhcCcHHHHHHHHHHHhhCCCCCCHHhHHHHHHH
Q 021791          155 ETYNCFFKEYRGRKDANGAMKLYRQMKEDDLCVPNIHTYNILIGMFMALNRMDMVREIWNHVKGSELGLDLDSYTMLIHG  234 (307)
Q Consensus       155 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~  234 (307)
                      ..+..+...+...|++++|...|++.....  +.+...|..+..++...|++++|+..++........ +...|..+..+
T Consensus        12 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~   88 (164)
T 3sz7_A           12 DKLKSEGNAAMARKEYSKAIDLYTQALSIA--PANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPK-YSKAWSRLGLA   88 (164)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-CHHHHHHHHHH
Confidence            344444555555555555555555555543  334555555555555555555555555555554321 44555555555


Q ss_pred             HHccCcHHHHHHHHHHHHHc
Q 021791          235 LCEKQKWKEACQYFVEMIEK  254 (307)
Q Consensus       235 ~~~~g~~~~a~~~~~~~~~~  254 (307)
                      |...|++++|...|++.++.
T Consensus        89 ~~~~g~~~~A~~~~~~al~~  108 (164)
T 3sz7_A           89 RFDMADYKGAKEAYEKGIEA  108 (164)
T ss_dssp             HHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHccCHHHHHHHHHHHHHh
Confidence            55666666666666655543

>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*

Probab=98.69  E-value=2.1e-06  Score=58.59  Aligned_cols=99  Identities=9%  Similarity=-0.043  Sum_probs=58.9

Q ss_pred             CHhhHHHHHHHHhcCCChhHHHHHHHHHhhcCCCCccHHHHHHHHHHHHhcCcHHHHHHHHHHHhhCCCCCCHHhHHHHH
Q 021791          153 SAETYNCFFKEYRGRKDANGAMKLYRQMKEDDLCVPNIHTYNILIGMFMALNRMDMVREIWNHVKGSELGLDLDSYTMLI  232 (307)
Q Consensus       153 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li  232 (307)
                      +...+..+...+...|++++|...|.......  +.+...+..+...+...|++++|...++....... .+...+..+.
T Consensus         8 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~l~   84 (137)
T 3q49_B            8 SAQELKEQGNRLFVGRKYPEAAACYGRAITRN--PLVAVYYTNRALCYLKMQQPEQALADCRRALELDG-QSVKAHFFLG   84 (137)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhC--cCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCc-hhHHHHHHHH
Confidence            34455555555666666666666666655553  34455666666666666666666666666655432 2455666666


Q ss_pred             HHHHccCcHHHHHHHHHHHHHc
Q 021791          233 HGLCEKQKWKEACQYFVEMIEK  254 (307)
Q Consensus       233 ~~~~~~g~~~~a~~~~~~~~~~  254 (307)
                      .++...|++++|...|++.++.
T Consensus        85 ~~~~~~~~~~~A~~~~~~a~~~  106 (137)
T 3q49_B           85 QCQLEMESYDEAIANLQRAYSL  106 (137)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHhhHHHHHHHHHHHHHH
Confidence            6666666666666666666543

>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A

Probab=98.69  E-value=7.1e-07  Score=61.63  Aligned_cols=96  Identities=7%  Similarity=-0.125  Sum_probs=58.5

Q ss_pred             hHHHHHHHHhcCCChhHHHHHHHHHhhcCCCCccHHHHHHHHHHHHhcCcHHHHHHHHHHHhhCCCCCCHHhHHHHHHHH
Q 021791          156 TYNCFFKEYRGRKDANGAMKLYRQMKEDDLCVPNIHTYNILIGMFMALNRMDMVREIWNHVKGSELGLDLDSYTMLIHGL  235 (307)
Q Consensus       156 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~  235 (307)
                      .+..+...+.+.|++++|...|+......  +.+...|..+..++...|++++|...++....... -+...+..+..+|
T Consensus        20 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~   96 (142)
T 2xcb_A           20 QLYALGFNQYQAGKWDDAQKIFQALCMLD--HYDARYFLGLGACRQSLGLYEQALQSYSYGALMDI-NEPRFPFHAAECH   96 (142)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCTHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHccHHHHHHHHHHHHHhC--CccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC-CCcHHHHHHHHHH
Confidence            34444555666666666666666666554  44556666666666666666666666666665532 2455566666666


Q ss_pred             HccCcHHHHHHHHHHHHHc
Q 021791          236 CEKQKWKEACQYFVEMIEK  254 (307)
Q Consensus       236 ~~~g~~~~a~~~~~~~~~~  254 (307)
                      ...|++++|...|++.++.
T Consensus        97 ~~~g~~~~A~~~~~~al~~  115 (142)
T 2xcb_A           97 LQLGDLDGAESGFYSARAL  115 (142)
T ss_dssp             HHTTCHHHHHHHHHHHHHH
T ss_pred             HHcCCHHHHHHHHHHHHHh
Confidence            6666666666666666544

>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*

Probab=98.68  E-value=6.2e-05  Score=59.35  Aligned_cols=241  Identities=10%  Similarity=0.009  Sum_probs=167.5

Q ss_pred             HHHHHHHHHH---HhcCchh-hHHHHHHHHHhcCCCC-cHHHHHHHHHHHHhhCCCCcchhhHHHHHHHHHHHHHHHhcC
Q 021791            5 KMYTSLIYGW---CKINRID-MAERFLGEMIERGVEP-NVVTYNVLLNGVCRRASLHPNERFEKTIRNAEKVFDEMRVRG   79 (307)
Q Consensus         5 ~~~~~li~~~---~~~g~~~-~a~~~~~~~~~~~~~p-~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~   79 (307)
                      ..|..+...+   .+.|.+. +|+++++.+...  .| +...|+.--..+...+...........+++++.+++.+....
T Consensus        27 ~~y~~~~~~~~~~~~~~e~s~eaL~~t~~~L~~--nP~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~  104 (331)
T 3dss_A           27 KLYQSATQAVFQKRQAGELDESVLELTSQILGA--NPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN  104 (331)
T ss_dssp             HHHHHHHHHHHHHHHTTCCSHHHHHHHHHHHTT--CTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH--CchhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhC
Confidence            3455544443   3556655 899999999886  44 445566655555442110000011233789999999998874


Q ss_pred             CCCCHHHHHHHHHHHHhcCC--chhHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCC-hHHHHHHHHHHHhCCCCCCHhh
Q 021791           80 IEPDVTSFSIVLHVYSRAHK--PQLSLDKLNFMKEKGICPTVATYTSVVKCLCSCGR-IEDAEELLGEMVRNGVSPSAET  156 (307)
Q Consensus        80 ~~~~~~~~~~ll~~~~~~~~--~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~  156 (307)
                       +-+..+|+.-...+...++  +++++.++..+.+.... +..+|+.-...+...|. ++++++.++.+.+.++. |...
T Consensus       105 -PKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~dpr-Ny~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~p~-N~SA  181 (331)
T 3dss_A          105 -PKSYGTWHHRCWLLSRLPEPNWARELELCARFLEADER-NFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFS-NYSS  181 (331)
T ss_dssp             -TTCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCSC-CHHH
T ss_pred             -CCCHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHCCC-CHHH
Confidence             4488889888888888884  78999999999998755 88888888888888888 58999999999988765 7777


Q ss_pred             HHHHHHHHhcC--------------CChhHHHHHHHHHhhcCCCCccHHHHHHHHHHHHhc-----------CcHHHHHH
Q 021791          157 YNCFFKEYRGR--------------KDANGAMKLYRQMKEDDLCVPNIHTYNILIGMFMAL-----------NRMDMVRE  211 (307)
Q Consensus       157 ~~~l~~~~~~~--------------~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-----------~~~~~a~~  211 (307)
                      |+.....+.+.              +.++++++.+.......  |-|..+|+-+--.+.+.           +.++++++
T Consensus       182 W~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~~--P~d~SaW~Y~r~ll~~~~~~~~~~~~~~~~l~~el~  259 (331)
T 3dss_A          182 WHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTD--PNDQSAWFYHRWLLGAGSGRCELSVEKSTVLQSELE  259 (331)
T ss_dssp             HHHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHHS--TTCHHHHHHHHHHHHSSSCGGGCCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHhccCccccchHHHHHHHHHHH
Confidence            77665555443              44778999999988876  67888887665555554           45789999


Q ss_pred             HHHHHhhCCCCCCH-HhHHHHH---HHHHccCcHHHHHHHHHHHHHc
Q 021791          212 IWNHVKGSELGLDL-DSYTMLI---HGLCEKQKWKEACQYFVEMIEK  254 (307)
Q Consensus       212 ~~~~~~~~~~~~~~-~~~~~li---~~~~~~g~~~~a~~~~~~~~~~  254 (307)
                      .++++.+..  |+. ..+-.++   ......|..+++...+.++++-
T Consensus       260 ~~~elle~~--pd~~w~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~  304 (331)
T 3dss_A          260 SCKELQELE--PENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAV  304 (331)
T ss_dssp             HHHHHHHHC--TTCHHHHHHHHHHHHHHCTTTTHHHHHHHHHHHHHH
T ss_pred             HHHHHHhhC--cccchHHHHHHHHHHhhcccccHHHHHHHHHHHHHh
Confidence            999988763  443 2222222   1222457778888899988865

>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}

Probab=98.67  E-value=5.3e-07  Score=58.98  Aligned_cols=11  Identities=27%  Similarity=-0.260  Sum_probs=4.0

Q ss_pred             CcHHHHHHHHH
Q 021791          239 QKWKEACQYFV  249 (307)
Q Consensus       239 g~~~~a~~~~~  249 (307)
                      |++++|.+.++
T Consensus        91 ~~~~~A~~~~~  101 (112)
T 2kck_A           91 GKEVEAEIAEA  101 (112)
T ss_dssp             SCSHHHHHHHH
T ss_pred             CCHHHHHHHHH
Confidence            33333333333

>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A

Probab=98.67  E-value=4.9e-07  Score=62.46  Aligned_cols=97  Identities=10%  Similarity=-0.083  Sum_probs=64.6

Q ss_pred             HHHHHHHHHHHhcCCchhHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHH
Q 021791           85 TSFSIVLHVYSRAHKPQLSLDKLNFMKEKGICPTVATYTSVVKCLCSCGRIEDAEELLGEMVRNGVSPSAETYNCFFKEY  164 (307)
Q Consensus        85 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~  164 (307)
                      ..+..+...+.+.|++++|...|+........ +...|..+..+|...|++++|...|++....+.. +...+..+..++
T Consensus        19 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~   96 (142)
T 2xcb_A           19 EQLYALGFNQYQAGKWDDAQKIFQALCMLDHY-DARYFLGLGACRQSLGLYEQALQSYSYGALMDIN-EPRFPFHAAECH   96 (142)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CTHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHccHHHHHHHHHHHHHhCCc-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC-CcHHHHHHHHHH
Confidence            34555666667777777777777777665432 5666666777777777777777777777665433 455666666677


Q ss_pred             hcCCChhHHHHHHHHHhhc
Q 021791          165 RGRKDANGAMKLYRQMKED  183 (307)
Q Consensus       165 ~~~~~~~~a~~~~~~~~~~  183 (307)
                      ...|++++|...|+.....
T Consensus        97 ~~~g~~~~A~~~~~~al~~  115 (142)
T 2xcb_A           97 LQLGDLDGAESGFYSARAL  115 (142)
T ss_dssp             HHTTCHHHHHHHHHHHHHH
T ss_pred             HHcCCHHHHHHHHHHHHHh
Confidence            7777777777777766654

>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*

Probab=98.65  E-value=1e-06  Score=60.23  Aligned_cols=99  Identities=8%  Similarity=-0.102  Sum_probs=55.4

Q ss_pred             CHHHHHHHHHHHHhcCCchhHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHhhHHHHHH
Q 021791           83 DVTSFSIVLHVYSRAHKPQLSLDKLNFMKEKGICPTVATYTSVVKCLCSCGRIEDAEELLGEMVRNGVSPSAETYNCFFK  162 (307)
Q Consensus        83 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~  162 (307)
                      +...+..+...+...|++++|...|+...+.... +...+..+..++...|++++|...+++....... +...+..+..
T Consensus         8 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~~   85 (137)
T 3q49_B            8 SAQELKEQGNRLFVGRKYPEAAACYGRAITRNPL-VAVYYTNRALCYLKMQQPEQALADCRRALELDGQ-SVKAHFFLGQ   85 (137)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcC-cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCch-hHHHHHHHHH
Confidence            4455555555666666666666666655554322 4455555556666666666666666655554322 4455555555


Q ss_pred             HHhcCCChhHHHHHHHHHhhc
Q 021791          163 EYRGRKDANGAMKLYRQMKED  183 (307)
Q Consensus       163 ~~~~~~~~~~a~~~~~~~~~~  183 (307)
                      ++...|++++|...|++....
T Consensus        86 ~~~~~~~~~~A~~~~~~a~~~  106 (137)
T 3q49_B           86 CQLEMESYDEAIANLQRAYSL  106 (137)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHhhHHHHHHHHHHHHHH
Confidence            555566666666555555443

>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A

Probab=98.65  E-value=6.6e-07  Score=60.36  Aligned_cols=108  Identities=15%  Similarity=0.199  Sum_probs=61.2

Q ss_pred             hHHHHHHHHhcCCChhHHHHHHHHHhhcCCCCccHHHHHHHHHHHHhcCcHHHHHHHHHHHhhCCC--CCC----HHhHH
Q 021791          156 TYNCFFKEYRGRKDANGAMKLYRQMKEDDLCVPNIHTYNILIGMFMALNRMDMVREIWNHVKGSEL--GLD----LDSYT  229 (307)
Q Consensus       156 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~~~----~~~~~  229 (307)
                      .+..+...+...|++++|...+.+.....  +.+...+..+...+...|++++|...++.+.....  .++    ..++.
T Consensus         6 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (131)
T 1elr_A            6 KEKELGNDAYKKKDFDTALKHYDKAKELD--PTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYA   83 (131)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHH
T ss_pred             HHHHHHHHHHHhcCHHHHHHHHHHHHhcC--CccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHH
Confidence            44445555556666666666666655543  34455556666666666666666666665554321  111    45566


Q ss_pred             HHHHHHHccCcHHHHHHHHHHHHHcCCCCcHhhHHHHH
Q 021791          230 MLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLY  267 (307)
Q Consensus       230 ~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~  267 (307)
                      .+..++...|++++|...|++..+.  .|+......+.
T Consensus        84 ~la~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~l~  119 (131)
T 1elr_A           84 RIGNSYFKEEKYKDAIHFYNKSLAE--HRTPDVLKKCQ  119 (131)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHH--CCCHHHHHHHH
T ss_pred             HHHHHHHHhccHHHHHHHHHHHHHh--CCCHHHHHHHH
Confidence            6666667777777777777776654  24444443333

>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}

Probab=98.64  E-value=1e-06  Score=59.60  Aligned_cols=93  Identities=15%  Similarity=0.118  Sum_probs=43.3

Q ss_pred             HHHHHHhcCCChhHHHHHHHHHhhcCCCCccHHHHHHHHHHHHhcCcHHHHHHHHHHHhhCCC--CCC----HHhHHHHH
Q 021791          159 CFFKEYRGRKDANGAMKLYRQMKEDDLCVPNIHTYNILIGMFMALNRMDMVREIWNHVKGSEL--GLD----LDSYTMLI  232 (307)
Q Consensus       159 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~~~----~~~~~~li  232 (307)
                      .+...+.+.|++++|+..|++..+..  +.+...|..+..+|...|++++|++.++...+...  .++    ..+|..+.
T Consensus        13 ~lG~~~~~~~~~~~A~~~y~~Al~~~--p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg   90 (127)
T 4gcn_A           13 DLGNAAYKQKDFEKAHVHYDKAIELD--PSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMSRAG   90 (127)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHHHHH
Confidence            34444444444444444444444433  33344444444455555555555554444433210  001    12344455


Q ss_pred             HHHHccCcHHHHHHHHHHHHH
Q 021791          233 HGLCEKQKWKEACQYFVEMIE  253 (307)
Q Consensus       233 ~~~~~~g~~~~a~~~~~~~~~  253 (307)
                      .++...|++++|+..|++.+.
T Consensus        91 ~~~~~~~~~~~A~~~~~kal~  111 (127)
T 4gcn_A           91 NAFQKQNDLSLAVQWFHRSLS  111 (127)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHcCCHHHHHHHHHHHHh
Confidence            555556666666666666554

>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}

Probab=98.64  E-value=1e-06  Score=59.60  Aligned_cols=96  Identities=7%  Similarity=0.040  Sum_probs=48.2

Q ss_pred             HHHHHHHHHHhcCCchhHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCC--CC----HhhHHH
Q 021791           86 SFSIVLHVYSRAHKPQLSLDKLNFMKEKGICPTVATYTSVVKCLCSCGRIEDAEELLGEMVRNGVS--PS----AETYNC  159 (307)
Q Consensus        86 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~--~~----~~~~~~  159 (307)
                      .+..+...+.+.|++++|++.|++..+.... +...|..+..+|.+.|++++|+..+++..+....  ++    ..+|..
T Consensus        10 a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~-~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~   88 (127)
T 4gcn_A           10 AEKDLGNAAYKQKDFEKAHVHYDKAIELDPS-NITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMSR   88 (127)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHHH
Confidence            3444555555666666666666655554322 4455555555666666666666655555432110  00    123344


Q ss_pred             HHHHHhcCCChhHHHHHHHHHhh
Q 021791          160 FFKEYRGRKDANGAMKLYRQMKE  182 (307)
Q Consensus       160 l~~~~~~~~~~~~a~~~~~~~~~  182 (307)
                      +..++...|++++|+..|++...
T Consensus        89 lg~~~~~~~~~~~A~~~~~kal~  111 (127)
T 4gcn_A           89 AGNAFQKQNDLSLAVQWFHRSLS  111 (127)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHh
Confidence            44444555555555555554444

>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}

Probab=98.61  E-value=7.5e-07  Score=58.25  Aligned_cols=104  Identities=10%  Similarity=0.004  Sum_probs=86.1

Q ss_pred             ccHHHHHHHHHHHHhcCcHHHHHHHHHHHhhCCCCCCHHhHHHHHHHHHccCcHHHHHHHHHHHHHcCCCC--cHhhHHH
Q 021791          188 PNIHTYNILIGMFMALNRMDMVREIWNHVKGSELGLDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLP--QKVTFET  265 (307)
Q Consensus       188 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p--~~~~~~~  265 (307)
                      .+...+..+...+...|++++|...++...... +.+...+..+..++...|++++|...+++..+.. +.  +...+..
T Consensus         4 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~   81 (112)
T 2kck_A            4 QNPEEYYLEGVLQYDAGNYTESIDLFEKAIQLD-PEESKYWLMKGKALYNLERYEEAVDCYNYVINVI-EDEYNKDVWAA   81 (112)
T ss_dssp             SSTTGGGGHHHHHHSSCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS-CCTTCHHHHHH
T ss_pred             CcHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-cccchHHHHHH
Confidence            345667778888889999999999999888764 2367788889999999999999999999998763 23  5778888


Q ss_pred             HHHHHhhc-hhHHHHHHHHHHhhhcCCCC
Q 021791          266 LYRGLIQS-DMLRTWRRLKKKLDEESITF  293 (307)
Q Consensus       266 l~~~~~~~-g~~~~a~~~~~~~~~~~~~~  293 (307)
                      +...+... |++++|.+.+++..+.....
T Consensus        82 l~~~~~~~~~~~~~A~~~~~~~~~~~p~~  110 (112)
T 2kck_A           82 KADALRYIEGKEVEAEIAEARAKLEHHHH  110 (112)
T ss_dssp             HHHHHTTCSSCSHHHHHHHHHHGGGCCCC
T ss_pred             HHHHHHHHhCCHHHHHHHHHHHhhcccCC
Confidence            99999999 99999999999997766543

>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A

Probab=98.60  E-value=8.7e-07  Score=59.76  Aligned_cols=98  Identities=13%  Similarity=0.120  Sum_probs=56.3

Q ss_pred             HHHHHHHHHHHhcCCchhHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCC--CC----HhhHH
Q 021791           85 TSFSIVLHVYSRAHKPQLSLDKLNFMKEKGICPTVATYTSVVKCLCSCGRIEDAEELLGEMVRNGVS--PS----AETYN  158 (307)
Q Consensus        85 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~--~~----~~~~~  158 (307)
                      ..+..+...+...|++++|...++...+... .+...+..+...+...|++++|...+++.......  ++    ..++.
T Consensus         5 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (131)
T 1elr_A            5 LKEKELGNDAYKKKDFDTALKHYDKAKELDP-TNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYA   83 (131)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcCHHHHHHHHHHHHhcCC-ccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHH
Confidence            3455566666666666666666666665532 24555666666666666666666666665543211  11    44455


Q ss_pred             HHHHHHhcCCChhHHHHHHHHHhhc
Q 021791          159 CFFKEYRGRKDANGAMKLYRQMKED  183 (307)
Q Consensus       159 ~l~~~~~~~~~~~~a~~~~~~~~~~  183 (307)
                      .+...+...|++++|...++.....
T Consensus        84 ~la~~~~~~~~~~~A~~~~~~~~~~  108 (131)
T 1elr_A           84 RIGNSYFKEEKYKDAIHFYNKSLAE  108 (131)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhccHHHHHHHHHHHHHh
Confidence            5555555666666666666555554

>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B

Probab=98.60  E-value=5.5e-05  Score=63.61  Aligned_cols=263  Identities=8%  Similarity=0.006  Sum_probs=161.8

Q ss_pred             HHHHHHHHHHHhcCchhhHHHHHHHHHhcCCCCcHHHHHHHHHHHHhhCCCCcchhhHHHHHHHHHHHHHHHhc-CC-CC
Q 021791            5 KMYTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPNERFEKTIRNAEKVFDEMRVR-GI-EP   82 (307)
Q Consensus         5 ~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~-~~-~~   82 (307)
                      .+|...+..+-. |+++.+..+|++.+..  .|+...|...+....+.++         ..+....+|+..... |. .+
T Consensus        16 ~vyer~l~~~P~-~~~e~~~~iferal~~--~ps~~LW~~Y~~f~~~~~~---------~~~~i~~~fe~al~~vg~d~~   83 (493)
T 2uy1_A           16 AIMEHARRLYMS-KDYRSLESLFGRCLKK--SYNLDLWMLYIEYVRKVSQ---------KKFKLYEVYEFTLGQFENYWD   83 (493)
T ss_dssp             HHHHHHHHHHHT-TCHHHHHHHHHHHSTT--CCCHHHHHHHHHHHHHHC-------------CTHHHHHHHHHHSTTCTT
T ss_pred             HHHHHHHHHCCC-CCHHHHHHHHHHHhcc--CCCHHHHHHHHHHHHHhCc---------hHHHHHHHHHHHHHHcCCCcc
Confidence            356666666655 8899999999999885  5799999999988777432         224456677766653 43 33


Q ss_pred             CHHHHHHHHHHHH----hcCCchhHHHHHHHHHHcCCCCchhh-------------------------------------
Q 021791           83 DVTSFSIVLHVYS----RAHKPQLSLDKLNFMKEKGICPTVAT-------------------------------------  121 (307)
Q Consensus        83 ~~~~~~~ll~~~~----~~~~~~~a~~~~~~~~~~~~~~~~~~-------------------------------------  121 (307)
                      +...|...+..+.    ..++.+.+.++|+.........-...                                     
T Consensus        84 s~~iW~~Yi~f~~~~~~~~~~~~~vR~iy~rAL~~P~~~~~~lw~~Y~~fE~~~~~~~~~~~~~~~~~~y~~ar~~y~~~  163 (493)
T 2uy1_A           84 SYGLYKEYIEEEGKIEDEQTRIEKIRNGYMRALQTPMGSLSELWKDFENFELELNKITGKKIVGDTLPIFQSSFQRYQQI  163 (493)
T ss_dssp             CHHHHHHHHHHTSSCSSHHHHHHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHhChhhhHHHHHHHHHHHHHHhccccHHHHHHHHhHHHHHHHHHHHHH
Confidence            6678888777654    24567778888888876421111111                                     


Q ss_pred             -----------HHHHHHHHHhc--CC-----hHHHHHHHHHHHhCCCCCCHhhHHHHHHHHhcCCChhHHHHHHHHHhhc
Q 021791          122 -----------YTSVVKCLCSC--GR-----IEDAEELLGEMVRNGVSPSAETYNCFFKEYRGRKDANGAMKLYRQMKED  183 (307)
Q Consensus       122 -----------~~~ll~~~~~~--~~-----~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~  183 (307)
                                 |...+..-...  +-     .+.+..+|+++.... +.+...|...+..+.+.|+.++|..++++....
T Consensus       164 ~~~~~~~s~~~W~~y~~~E~~~~~~~~~~~~~~Rv~~~ye~al~~~-p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~  242 (493)
T 2uy1_A          164 QPLIRGWSVKNAARLIDLEMENGMKLGGRPHESRMHFIHNYILDSF-YYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM  242 (493)
T ss_dssp             HHHHHTCSHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHT-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHhhccHHHHHHHHHHHhcCCccCcchhhHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC
Confidence                       11111111110  00     234566777777653 335778888888888899999999999887765


Q ss_pred             CCCCccH----------------------------------------HHHHHHHHHHHhcCcHHHHHHHHHHHhhCCCCC
Q 021791          184 DLCVPNI----------------------------------------HTYNILIGMFMALNRMDMVREIWNHVKGSELGL  223 (307)
Q Consensus       184 ~~~~~~~----------------------------------------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~  223 (307)
                       .  .+.                                        .+|...+....+.++.+.|..+|+.. .. ...
T Consensus       243 -P--~~~~l~~~y~~~~e~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~-~~~  317 (493)
T 2uy1_A          243 -S--DGMFLSLYYGLVMDEEAVYGDLKRKYSMGEAESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIEL-GN-EGV  317 (493)
T ss_dssp             -C--CSSHHHHHHHHHTTCTHHHHHHHHHTC----------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-TT-SCC
T ss_pred             -C--CcHHHHHHHHhhcchhHHHHHHHHHHHhhccchhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-hC-CCC
Confidence             2  111                                        12223333333456788888888888 32 123


Q ss_pred             CHHhHHHHHHHHHc-cCcHHHHHHHHHHHHHcCCCCcHhhHHHHHHHHhhchhHHHHHHHHHHh
Q 021791          224 DLDSYTMLIHGLCE-KQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKL  286 (307)
Q Consensus       224 ~~~~~~~li~~~~~-~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~  286 (307)
                      +...|......-.. .++.+.|..+|+..++.- +-++..+...++-..+.|+.+.|+.++++.
T Consensus       318 ~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~-~~~~~~~~~yid~e~~~~~~~~aR~l~er~  380 (493)
T 2uy1_A          318 GPHVFIYCAFIEYYATGSRATPYNIFSSGLLKH-PDSTLLKEEFFLFLLRIGDEENARALFKRL  380 (493)
T ss_dssp             CHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHS
T ss_pred             ChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            44444332222222 236888999998888762 223344555666667788888888888876

>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.59  E-value=2.8e-06  Score=58.70  Aligned_cols=98  Identities=7%  Similarity=-0.068  Sum_probs=51.0

Q ss_pred             CHHHHHHHHHHHHhcCCchhHHHHHHHHHHcCCCCc----hhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHhhHH
Q 021791           83 DVTSFSIVLHVYSRAHKPQLSLDKLNFMKEKGICPT----VATYTSVVKCLCSCGRIEDAEELLGEMVRNGVSPSAETYN  158 (307)
Q Consensus        83 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~  158 (307)
                      +...+..+...+...|++++|.+.|+...+..  |+    ...+..+..+|...|++++|...+++....... +...+.
T Consensus        27 ~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~  103 (148)
T 2dba_A           27 SVEQLRKEGNELFKCGDYGGALAAYTQALGLD--ATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGG-DVKALY  103 (148)
T ss_dssp             CHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSC--CCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSC-CHHHHH
T ss_pred             HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHc--ccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCcc-CHHHHH
Confidence            34455555555555666666666665555442  22    344555555555555555555555555543221 344444


Q ss_pred             HHHHHHhcCCChhHHHHHHHHHhhc
Q 021791          159 CFFKEYRGRKDANGAMKLYRQMKED  183 (307)
Q Consensus       159 ~l~~~~~~~~~~~~a~~~~~~~~~~  183 (307)
                      .+..++...|++++|...|++....
T Consensus       104 ~~a~~~~~~~~~~~A~~~~~~al~~  128 (148)
T 2dba_A          104 RRSQALEKLGRLDQAVLDLQRCVSL  128 (148)
T ss_dssp             HHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHc
Confidence            5555555555555555555555444

>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=98.58  E-value=1.4e-05  Score=66.06  Aligned_cols=167  Identities=10%  Similarity=0.006  Sum_probs=72.3

Q ss_pred             HHHHHHHHHhcCCchhHHHHHHHHHHcC-CCCchh----hHHHHHHHHHhcCChHHHHHHHHHHHhC----CCCC-CHhh
Q 021791           87 FSIVLHVYSRAHKPQLSLDKLNFMKEKG-ICPTVA----TYTSVVKCLCSCGRIEDAEELLGEMVRN----GVSP-SAET  156 (307)
Q Consensus        87 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~----~~~~ll~~~~~~~~~~~a~~~~~~~~~~----~~~~-~~~~  156 (307)
                      +..+...|...|++++|.+.+..+.+.- ..++..    +.+.+-..+...|+.++|..+++.....    +..+ -..+
T Consensus        58 l~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~  137 (434)
T 4b4t_Q           58 ILELGQLYVTMGAKDKLREFIPHSTEYMMQFAKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSL  137 (434)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHH
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHH
Confidence            4445555555555555555555543321 011111    1122222233345555555555544321    1111 1234


Q ss_pred             HHHHHHHHhcCCChhHHHHHHHHHhhcCC----CCccHHHHHHHHHHHHhcCcHHHHHHHHHHHhhC--CC-CC-C--HH
Q 021791          157 YNCFFKEYRGRKDANGAMKLYRQMKEDDL----CVPNIHTYNILIGMFMALNRMDMVREIWNHVKGS--EL-GL-D--LD  226 (307)
Q Consensus       157 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~----~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~-~~-~--~~  226 (307)
                      +..+...|...|++++|..++.+....-.    .+....++..++..|...|++++|..+++.....  .. .| .  ..
T Consensus       138 ~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~  217 (434)
T 4b4t_Q          138 SIKLATLHYQKKQYKDSLALINDLLREFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAE  217 (434)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHH
T ss_pred             HHHHHHHHHHccChHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHH
Confidence            44555555555555555555555433211    0011234455555555555555555555544321  00 11 0  12


Q ss_pred             hHHHHHHHHHccCcHHHHHHHHHHHHH
Q 021791          227 SYTMLIHGLCEKQKWKEACQYFVEMIE  253 (307)
Q Consensus       227 ~~~~li~~~~~~g~~~~a~~~~~~~~~  253 (307)
                      .+..+...+...|++++|...|.+..+
T Consensus       218 ~~~~~g~~~~~~~~y~~A~~~~~~a~~  244 (434)
T 4b4t_Q          218 LDLMSGILHCEDKDYKTAFSYFFESFE  244 (434)
T ss_dssp             HHHHHHHHTTSSSCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence            233444444555555555555555443

>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.58  E-value=3.8e-06  Score=57.98  Aligned_cols=98  Identities=13%  Similarity=-0.006  Sum_probs=52.8

Q ss_pred             chhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCC----HhhHHHHHHHHhcCCChhHHHHHHHHHhhcCCCCccHHHH
Q 021791          118 TVATYTSVVKCLCSCGRIEDAEELLGEMVRNGVSPS----AETYNCFFKEYRGRKDANGAMKLYRQMKEDDLCVPNIHTY  193 (307)
Q Consensus       118 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~  193 (307)
                      +...+..+...+...|++++|...|++..+..  |+    ...+..+...|...|++++|...+++.....  +.+...+
T Consensus        27 ~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~  102 (148)
T 2dba_A           27 SVEQLRKEGNELFKCGDYGGALAAYTQALGLD--ATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKD--GGDVKAL  102 (148)
T ss_dssp             CHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSC--CCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT--SCCHHHH
T ss_pred             HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHc--ccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC--ccCHHHH
Confidence            34455555556666666666666666665542  23    3445555555555555555555555555443  3344455


Q ss_pred             HHHHHHHHhcCcHHHHHHHHHHHhhC
Q 021791          194 NILIGMFMALNRMDMVREIWNHVKGS  219 (307)
Q Consensus       194 ~~l~~~~~~~~~~~~a~~~~~~~~~~  219 (307)
                      ..+..++...|++++|...++.....
T Consensus       103 ~~~a~~~~~~~~~~~A~~~~~~al~~  128 (148)
T 2dba_A          103 YRRSQALEKLGRLDQAVLDLQRCVSL  128 (148)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHc
Confidence            55555555555555555555555443

>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1

Probab=98.53  E-value=1.8e-06  Score=57.71  Aligned_cols=90  Identities=7%  Similarity=-0.040  Sum_probs=38.4

Q ss_pred             HHHHHHhcCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHhcCCChhHHHHHHHHHhhcCCCCccHHHHHHHHHHHHhcC
Q 021791          125 VVKCLCSCGRIEDAEELLGEMVRNGVSPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDDLCVPNIHTYNILIGMFMALN  204 (307)
Q Consensus       125 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~  204 (307)
                      +...+.+.|++++|...|++..+.... +...|..+..++...|++++|...|++..+..  +.+...+..+..++...|
T Consensus        23 ~g~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~--P~~~~~~~~la~~~~~~g   99 (121)
T 1hxi_A           23 EGLSMLKLANLAEAALAFEAVCQKEPE-REEAWRSLGLTQAENEKDGLAIIALNHARMLD--PKDIAVHAALAVSHTNEH   99 (121)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcC
Confidence            333444444444444444444443221 33444444444444444444444444444432  233334444444444444


Q ss_pred             cHHHHHHHHHHHh
Q 021791          205 RMDMVREIWNHVK  217 (307)
Q Consensus       205 ~~~~a~~~~~~~~  217 (307)
                      ++++|...++...
T Consensus       100 ~~~~A~~~~~~al  112 (121)
T 1hxi_A          100 NANAALASLRAWL  112 (121)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHH
Confidence            4444444444443

>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1

Probab=98.52  E-value=1.6e-06  Score=58.03  Aligned_cols=91  Identities=8%  Similarity=-0.061  Sum_probs=47.8

Q ss_pred             HHHHHHhcCCChhHHHHHHHHHhhcCCCCccHHHHHHHHHHHHhcCcHHHHHHHHHHHhhCCCCCCHHhHHHHHHHHHcc
Q 021791          159 CFFKEYRGRKDANGAMKLYRQMKEDDLCVPNIHTYNILIGMFMALNRMDMVREIWNHVKGSELGLDLDSYTMLIHGLCEK  238 (307)
Q Consensus       159 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~  238 (307)
                      .+...+.+.|++++|...+++.....  +.+...|..+..++...|++++|+..+++....... +...+..+..++...
T Consensus        22 ~~g~~~~~~g~~~~A~~~~~~al~~~--P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~-~~~~~~~la~~~~~~   98 (121)
T 1hxi_A           22 EEGLSMLKLANLAEAALAFEAVCQKE--PEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPK-DIAVHAALAVSHTNE   98 (121)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHS--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHc
Confidence            34444555555555555555555543  344555555555555555555555555555544321 344455555555555


Q ss_pred             CcHHHHHHHHHHHH
Q 021791          239 QKWKEACQYFVEMI  252 (307)
Q Consensus       239 g~~~~a~~~~~~~~  252 (307)
                      |++++|+..+++.+
T Consensus        99 g~~~~A~~~~~~al  112 (121)
T 1hxi_A           99 HNANAALASLRAWL  112 (121)
T ss_dssp             HHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHH
Confidence            55555555555554

>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=98.49  E-value=6.8e-06  Score=67.89  Aligned_cols=197  Identities=6%  Similarity=-0.076  Sum_probs=138.9

Q ss_pred             HHHHHhcCchhhHHHHHHHHHhcCCCCc----------------HHHHHHHHHHHHhhCCCCcchhhHHHHHHHHHHHHH
Q 021791           11 IYGWCKINRIDMAERFLGEMIERGVEPN----------------VVTYNVLLNGVCRRASLHPNERFEKTIRNAEKVFDE   74 (307)
Q Consensus        11 i~~~~~~g~~~~a~~~~~~~~~~~~~p~----------------~~~~~~ll~~~~~~~~~~~~~~~~~~~~~a~~~~~~   74 (307)
                      ...+.+.|++++|++.|..+.+......                ...+..+...|..          .|++++|.+.+..
T Consensus        11 a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~----------~~~~~~a~~~~~~   80 (434)
T 4b4t_Q           11 ARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVT----------MGAKDKLREFIPH   80 (434)
T ss_dssp             HHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHH----------HTCHHHHHHHHHH
T ss_pred             HHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHH----------CCCHHHHHHHHHH
Confidence            4567789999999999999987632211                1246778888988          8888999999887


Q ss_pred             HHhcC-CCCCH----HHHHHHHHHHHhcCCchhHHHHHHHHHHc----CCCC-chhhHHHHHHHHHhcCChHHHHHHHHH
Q 021791           75 MRVRG-IEPDV----TSFSIVLHVYSRAHKPQLSLDKLNFMKEK----GICP-TVATYTSVVKCLCSCGRIEDAEELLGE  144 (307)
Q Consensus        75 ~~~~~-~~~~~----~~~~~ll~~~~~~~~~~~a~~~~~~~~~~----~~~~-~~~~~~~ll~~~~~~~~~~~a~~~~~~  144 (307)
                      +...- -.++.    .+.+.+-..+...|+.+.+.+++......    +..+ -..++..+...|...|++++|..++++
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~  160 (434)
T 4b4t_Q           81 STEYMMQFAKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALIND  160 (434)
T ss_dssp             THHHHHTSCHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred             HHHHHHHccchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHH
Confidence            76531 11222    22333444445678899999998877542    2222 355778899999999999999999998


Q ss_pred             HHhC----CCCC-CHhhHHHHHHHHhcCCChhHHHHHHHHHhhcC--CCCc-c--HHHHHHHHHHHHhcCcHHHHHHHHH
Q 021791          145 MVRN----GVSP-SAETYNCFFKEYRGRKDANGAMKLYRQMKEDD--LCVP-N--IHTYNILIGMFMALNRMDMVREIWN  214 (307)
Q Consensus       145 ~~~~----~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--~~~~-~--~~~~~~l~~~~~~~~~~~~a~~~~~  214 (307)
                      +...    +..+ ...++..++..|...|++++|..++++.....  ...| .  ...+..+...+...|++++|...+.
T Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~~~  240 (434)
T 4b4t_Q          161 LLREFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILHCEDKDYKTAFSYFF  240 (434)
T ss_dssp             HHHHHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSSSCHHHHHHHHH
T ss_pred             HHHHHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence            7653    1111 24578889999999999999999998876431  1012 1  3456667777788899999988776


Q ss_pred             HHh
Q 021791          215 HVK  217 (307)
Q Consensus       215 ~~~  217 (307)
                      ...
T Consensus       241 ~a~  243 (434)
T 4b4t_Q          241 ESF  243 (434)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            654

>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}

Probab=98.48  E-value=1.7e-06  Score=60.70  Aligned_cols=132  Identities=8%  Similarity=-0.012  Sum_probs=56.7

Q ss_pred             hHHHHHHHHHhcCChHHHHHHHHHHHhCCCC-CC----HhhHHHHHHHHhcCCChhHHHHHHHHHhhcCC----CCccHH
Q 021791          121 TYTSVVKCLCSCGRIEDAEELLGEMVRNGVS-PS----AETYNCFFKEYRGRKDANGAMKLYRQMKEDDL----CVPNIH  191 (307)
Q Consensus       121 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~-~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~----~~~~~~  191 (307)
                      ++..+...+...|++++|...+++....... ++    ..++..+...+...|++++|...+++......    ......
T Consensus        11 ~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~   90 (164)
T 3ro3_A           11 AFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQ   90 (164)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHH
Confidence            3444444455555555555555544332100 00    12344444455555555555555554433210    000123


Q ss_pred             HHHHHHHHHHhcCcHHHHHHHHHHHhhC----CCCC-CHHhHHHHHHHHHccCcHHHHHHHHHHHH
Q 021791          192 TYNILIGMFMALNRMDMVREIWNHVKGS----ELGL-DLDSYTMLIHGLCEKQKWKEACQYFVEMI  252 (307)
Q Consensus       192 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~-~~~~~~~li~~~~~~g~~~~a~~~~~~~~  252 (307)
                      ++..+...+...|++++|.+.+++....    +..+ ....+..+...+...|++++|...+++..
T Consensus        91 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~  156 (164)
T 3ro3_A           91 SCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHL  156 (164)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence            4444555555555555555555544321    1000 11234444444555555555555555443

>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A

Probab=98.47  E-value=4.1e-06  Score=69.89  Aligned_cols=131  Identities=10%  Similarity=0.003  Sum_probs=82.7

Q ss_pred             chhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCC--------------HhhHHHHHHHHhcCCChhHHHHHHHHHhhc
Q 021791          118 TVATYTSVVKCLCSCGRIEDAEELLGEMVRNGVSPS--------------AETYNCFFKEYRGRKDANGAMKLYRQMKED  183 (307)
Q Consensus       118 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~--------------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~  183 (307)
                      ....+..+...+.+.|++++|...|++.........              ...|..+..+|.+.|++++|+..+++....
T Consensus       267 ~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~  346 (457)
T 1kt0_A          267 QAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGL  346 (457)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhc
Confidence            344566677777777888888888777776432211              456666667777777777777777777666


Q ss_pred             CCCCccHHHHHHHHHHHHhcCcHHHHHHHHHHHhhCCCCCCHHhHHHHHHHHHccCcHHHHHH-HHHHH
Q 021791          184 DLCVPNIHTYNILIGMFMALNRMDMVREIWNHVKGSELGLDLDSYTMLIHGLCEKQKWKEACQ-YFVEM  251 (307)
Q Consensus       184 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~-~~~~~  251 (307)
                      .  +.+...|..+..+|...|++++|...|+.+.+.... +...+..+..++...++.+++.. .+..|
T Consensus       347 ~--p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~-~~~a~~~l~~~~~~~~~~~~a~~~~~~~~  412 (457)
T 1kt0_A          347 D--SANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQ-NKAARLQISMCQKKAKEHNERDRRIYANM  412 (457)
T ss_dssp             S--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-----CHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred             C--CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4  456666777777777777777777777777665322 44556666666666666655543 34444

>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3

Probab=98.45  E-value=1.6e-06  Score=72.75  Aligned_cols=119  Identities=12%  Similarity=0.046  Sum_probs=76.8

Q ss_pred             HHHhcCCChhHHHHHHHHHhhcCCCCccHHHHHHHHHHHHhcCcHHHHHHHHHHHhhCCCCCCHHhHHHHHHHHHccCcH
Q 021791          162 KEYRGRKDANGAMKLYRQMKEDDLCVPNIHTYNILIGMFMALNRMDMVREIWNHVKGSELGLDLDSYTMLIHGLCEKQKW  241 (307)
Q Consensus       162 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~  241 (307)
                      ..+.+.|++++|...+++..+..  +.+..++..+..++.+.|++++|.+.+++..+... -+...+..+..+|...|++
T Consensus        14 ~~~~~~g~~~~A~~~~~~Al~~~--p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p-~~~~~~~~lg~~~~~~g~~   90 (477)
T 1wao_1           14 NDYFKAKDYENAIKFYSQAIELN--PSNAIYYGNRSLAYLRTECYGYALGDATRAIELDK-KYIKGYYRRAASNMALGKF   90 (477)
T ss_dssp             SSTTTTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCT-TCHHHHHHHHHHHHHHTCH
T ss_pred             HHHHHhCCHHHHHHHHHHHHHhC--CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCH
Confidence            34556677777777777776664  45567777777777777777777777777776642 2566777777777777888


Q ss_pred             HHHHHHHHHHHHcCCCCcHhhHHHHHHH--HhhchhHHHHHHHHH
Q 021791          242 KEACQYFVEMIEKGLLPQKVTFETLYRG--LIQSDMLRTWRRLKK  284 (307)
Q Consensus       242 ~~a~~~~~~~~~~~~~p~~~~~~~l~~~--~~~~g~~~~a~~~~~  284 (307)
                      ++|...|++.++.. +-+...+..+..+  +.+.|++++|.+.++
T Consensus        91 ~eA~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~  134 (477)
T 1wao_1           91 RAALRDYETVVKVK-PHDKDAKMKYQECNKIVKQKAFERAIAGDE  134 (477)
T ss_dssp             HHHHHHHHHHHHHS-TTCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred             HHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence            88888877777652 1123344444444  667777777777776

>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A

Probab=98.45  E-value=4.6e-06  Score=69.57  Aligned_cols=133  Identities=8%  Similarity=-0.055  Sum_probs=108.4

Q ss_pred             CHHHHHHHHHHHHhcCCchhHHHHHHHHHHcCCCCc--------------hhhHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 021791           83 DVTSFSIVLHVYSRAHKPQLSLDKLNFMKEKGICPT--------------VATYTSVVKCLCSCGRIEDAEELLGEMVRN  148 (307)
Q Consensus        83 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~--------------~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~  148 (307)
                      ....+..+...+.+.|++++|...|++..+......              ...|..+..+|.+.|++++|+..+++....
T Consensus       267 ~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~  346 (457)
T 1kt0_A          267 QAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGL  346 (457)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhc
Confidence            355778888999999999999999999987643211              578999999999999999999999999987


Q ss_pred             CCCCCHhhHHHHHHHHhcCCChhHHHHHHHHHhhcCCCCccHHHHHHHHHHHHhcCcHHHHHH-HHHHHhh
Q 021791          149 GVSPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDDLCVPNIHTYNILIGMFMALNRMDMVRE-IWNHVKG  218 (307)
Q Consensus       149 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~-~~~~~~~  218 (307)
                      ... +...|..+..+|...|++++|...|++..+..  +.+...+..+..++.+.++.+++.+ .+..|..
T Consensus       347 ~p~-~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~--P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~f~  414 (457)
T 1kt0_A          347 DSA-NEKGLYRRGEAQLLMNEFESAKGDFEKVLEVN--PQNKAARLQISMCQKKAKEHNERDRRIYANMFK  414 (457)
T ss_dssp             STT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC------CHHHHHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred             CCc-cHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            544 78889999999999999999999999999875  5677888899999999998887764 4555543

>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}

Probab=98.45  E-value=2.6e-06  Score=59.71  Aligned_cols=136  Identities=11%  Similarity=-0.042  Sum_probs=102.7

Q ss_pred             HhhHHHHHHHHhcCCChhHHHHHHHHHhhcCCCCcc----HHHHHHHHHHHHhcCcHHHHHHHHHHHhhCCCC-CC----
Q 021791          154 AETYNCFFKEYRGRKDANGAMKLYRQMKEDDLCVPN----IHTYNILIGMFMALNRMDMVREIWNHVKGSELG-LD----  224 (307)
Q Consensus       154 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~----  224 (307)
                      ..++..+...+...|++++|...+++........++    ..++..+...+...|++++|.+.++........ .+    
T Consensus         9 ~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~   88 (164)
T 3ro3_A            9 GRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVE   88 (164)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHH
Confidence            346777888899999999999999988764210111    247788899999999999999999887653111 11    


Q ss_pred             HHhHHHHHHHHHccCcHHHHHHHHHHHHHc----CCCC-cHhhHHHHHHHHhhchhHHHHHHHHHHhhhc
Q 021791          225 LDSYTMLIHGLCEKQKWKEACQYFVEMIEK----GLLP-QKVTFETLYRGLIQSDMLRTWRRLKKKLDEE  289 (307)
Q Consensus       225 ~~~~~~li~~~~~~g~~~~a~~~~~~~~~~----~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~  289 (307)
                      ...+..+...+...|++++|...+++..+.    +..+ ...++..+...+...|++++|.+.+++..+.
T Consensus        89 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~  158 (164)
T 3ro3_A           89 AQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEI  158 (164)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence            446778888999999999999999988754    2111 1346777888899999999999999887543

>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}

Probab=98.44  E-value=8.8e-06  Score=54.76  Aligned_cols=92  Identities=11%  Similarity=0.017  Sum_probs=49.6

Q ss_pred             HHHHHhcCCChhHHHHHHHHHhhcCCCCccH---HHHHHHHHHHHhcCcHHHHHHHHHHHhhCCCCCC---HHhHHHHHH
Q 021791          160 FFKEYRGRKDANGAMKLYRQMKEDDLCVPNI---HTYNILIGMFMALNRMDMVREIWNHVKGSELGLD---LDSYTMLIH  233 (307)
Q Consensus       160 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~li~  233 (307)
                      +...+...|++++|...|+......  +.+.   ..+..+..++...|++++|...++.+...... +   ...+..+..
T Consensus         8 ~a~~~~~~~~~~~A~~~~~~~~~~~--p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~~~~~la~   84 (129)
T 2xev_A            8 VAFDALKNGKYDDASQLFLSFLELY--PNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPT-HDKAAGGLLKLGL   84 (129)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHC--SSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-STTHHHHHHHHHH
T ss_pred             HHHHHHHhCCHHHHHHHHHHHHHHC--CCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCC-CcccHHHHHHHHH
Confidence            3344555555555555555555442  1222   34555555566666666666666655554211 2   344555556


Q ss_pred             HHHccCcHHHHHHHHHHHHHc
Q 021791          234 GLCEKQKWKEACQYFVEMIEK  254 (307)
Q Consensus       234 ~~~~~g~~~~a~~~~~~~~~~  254 (307)
                      ++...|++++|...|+++++.
T Consensus        85 ~~~~~g~~~~A~~~~~~~~~~  105 (129)
T 2xev_A           85 SQYGEGKNTEAQQTLQQVATQ  105 (129)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHcCCHHHHHHHHHHHHHH
Confidence            666666666666666666654

>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3

Probab=98.44  E-value=8.8e-07  Score=74.29  Aligned_cols=117  Identities=15%  Similarity=0.043  Sum_probs=55.0

Q ss_pred             HHhcCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHhcCCChhHHHHHHHHHhhcCCCCccHHHHHHHHHHHHhcCcHHH
Q 021791          129 LCSCGRIEDAEELLGEMVRNGVSPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDDLCVPNIHTYNILIGMFMALNRMDM  208 (307)
Q Consensus       129 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  208 (307)
                      +.+.|++++|.+.|++..+.... +...+..+..+|.+.|++++|...+++..+..  +.+..++..+..+|...|++++
T Consensus        16 ~~~~g~~~~A~~~~~~Al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~--p~~~~~~~~lg~~~~~~g~~~e   92 (477)
T 1wao_1           16 YFKAKDYENAIKFYSQAIELNPS-NAIYYGNRSLAYLRTECYGYALGDATRAIELD--KKYIKGYYRRAASNMALGKFRA   92 (477)
T ss_dssp             TTTTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSC--TTCHHHHHHHHHHHHHHTCHHH
T ss_pred             HHHhCCHHHHHHHHHHHHHhCCc-cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHH
Confidence            34445555555555555544222 34455555555555555555555555555543  3344555555555555555555


Q ss_pred             HHHHHHHHhhCCCCCCHHhHHHHHHH--HHccCcHHHHHHHHH
Q 021791          209 VREIWNHVKGSELGLDLDSYTMLIHG--LCEKQKWKEACQYFV  249 (307)
Q Consensus       209 a~~~~~~~~~~~~~~~~~~~~~li~~--~~~~g~~~~a~~~~~  249 (307)
                      |.+.+++..+.... +...+..+..+  +.+.|++++|++.++
T Consensus        93 A~~~~~~al~~~p~-~~~~~~~l~~~~~~~~~g~~~~A~~~~~  134 (477)
T 1wao_1           93 ALRDYETVVKVKPH-DKDAKMKYQECNKIVKQKAFERAIAGDE  134 (477)
T ss_dssp             HHHHHHHHHHHSTT-CTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred             HHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence            55555555443211 22233333333  445555555555555

>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A

Probab=98.44  E-value=8.3e-06  Score=65.97  Aligned_cols=122  Identities=7%  Similarity=-0.036  Sum_probs=92.9

Q ss_pred             hHHHHHHHHhcCCChhHHHHHHHHHhh----------------cCCCCccHHHHHHHHHHHHhcCcHHHHHHHHHHHhhC
Q 021791          156 TYNCFFKEYRGRKDANGAMKLYRQMKE----------------DDLCVPNIHTYNILIGMFMALNRMDMVREIWNHVKGS  219 (307)
Q Consensus       156 ~~~~l~~~~~~~~~~~~a~~~~~~~~~----------------~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~  219 (307)
                      .+..+...+.+.|++++|...|++..+                ..  +.+..+|..+..+|.+.|++++|++.+++..+.
T Consensus       225 ~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~--~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~  302 (370)
T 1ihg_A          225 DLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQ--PVALSCVLNIGACKLKMSDWQGAVDSCLEALEI  302 (370)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGH--HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHH--HHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHh
Confidence            345556666677777777777766654                22  345678888999999999999999999999886


Q ss_pred             CCCCCHHhHHHHHHHHHccCcHHHHHHHHHHHHHcCCCCcHhhHHHHHHHHhhchhHHHHHH
Q 021791          220 ELGLDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRR  281 (307)
Q Consensus       220 ~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~  281 (307)
                      .. -+...|..+..+|...|++++|+..|++.++.. +-+...+..+...+...++.+++.+
T Consensus       303 ~p-~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~-P~~~~~~~~l~~~~~~~~~~~~a~k  362 (370)
T 1ihg_A          303 DP-SNTKALYRRAQGWQGLKEYDQALADLKKAQEIA-PEDKAIQAELLKVKQKIKAQKDKEK  362 (370)
T ss_dssp             CT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             Cc-hhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHH
Confidence            43 367888899999999999999999999998763 2355667777777777787776654

>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}

Probab=98.44  E-value=1.8e-05  Score=53.23  Aligned_cols=92  Identities=12%  Similarity=-0.054  Sum_probs=49.5

Q ss_pred             HHHHHHhcCCchhHHHHHHHHHHcCCCCch---hhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCC---HhhHHHHHHH
Q 021791           90 VLHVYSRAHKPQLSLDKLNFMKEKGICPTV---ATYTSVVKCLCSCGRIEDAEELLGEMVRNGVSPS---AETYNCFFKE  163 (307)
Q Consensus        90 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~  163 (307)
                      +...+...|++++|...|+...+.... +.   ..+..+..++...|++++|...|+++...... +   ...+..+..+
T Consensus         8 ~a~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~~~~~la~~   85 (129)
T 2xev_A            8 VAFDALKNGKYDDASQLFLSFLELYPN-GVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPT-HDKAAGGLLKLGLS   85 (129)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHCSS-STTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-STTHHHHHHHHHHH
T ss_pred             HHHHHHHhCCHHHHHHHHHHHHHHCCC-CcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCC-CcccHHHHHHHHHH
Confidence            344555566666666666665554221 22   34555555566666666666666665554322 2   3445555555


Q ss_pred             HhcCCChhHHHHHHHHHhhc
Q 021791          164 YRGRKDANGAMKLYRQMKED  183 (307)
Q Consensus       164 ~~~~~~~~~a~~~~~~~~~~  183 (307)
                      +...|++++|...|+.+...
T Consensus        86 ~~~~g~~~~A~~~~~~~~~~  105 (129)
T 2xev_A           86 QYGEGKNTEAQQTLQQVATQ  105 (129)
T ss_dssp             HHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHcCCHHHHHHHHHHHHHH
Confidence            55666666666666655554

>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}

Probab=98.42  E-value=6.8e-07  Score=59.43  Aligned_cols=84  Identities=10%  Similarity=0.007  Sum_probs=34.8

Q ss_pred             CCchhHHHHHHHHHHcC--CCCchhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHhcCCChhHHHH
Q 021791           98 HKPQLSLDKLNFMKEKG--ICPTVATYTSVVKCLCSCGRIEDAEELLGEMVRNGVSPSAETYNCFFKEYRGRKDANGAMK  175 (307)
Q Consensus        98 ~~~~~a~~~~~~~~~~~--~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~  175 (307)
                      |++++|+..|++..+.+  -+.+...+..+..+|...|++++|...|++..+..+. +...+..+..++...|++++|..
T Consensus         4 g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~   82 (117)
T 3k9i_A            4 GLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPN-HQALRVFYAMVLYNLGRYEQGVE   82 (117)
T ss_dssp             ---CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHH
T ss_pred             CcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-chHHHHHHHHHHHHcCCHHHHHH
Confidence            44444444444444432  1112333444444444444444444444444443222 33444444444444444444444


Q ss_pred             HHHHHhh
Q 021791          176 LYRQMKE  182 (307)
Q Consensus       176 ~~~~~~~  182 (307)
                      .+++...
T Consensus        83 ~~~~al~   89 (117)
T 3k9i_A           83 LLLKIIA   89 (117)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            4444443

>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A

Probab=98.41  E-value=5.4e-06  Score=67.07  Aligned_cols=97  Identities=9%  Similarity=0.075  Sum_probs=49.5

Q ss_pred             HHHHHHHHHHhcCCchhHHHHHHHHHHcC---------------CCCchhhHHHHHHHHHhcCChHHHHHHHHHHHhCCC
Q 021791           86 SFSIVLHVYSRAHKPQLSLDKLNFMKEKG---------------ICPTVATYTSVVKCLCSCGRIEDAEELLGEMVRNGV  150 (307)
Q Consensus        86 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~---------------~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~  150 (307)
                      .+..+...+.+.|++++|++.|++..+.-               .+.+..+|..+..+|.+.|++++|+..+++..+...
T Consensus       225 ~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p  304 (370)
T 1ihg_A          225 DLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEIDP  304 (370)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCT
T ss_pred             HHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCc
Confidence            46667777888888888888887776520               011233344444444444444444444444444322


Q ss_pred             CCCHhhHHHHHHHHhcCCChhHHHHHHHHHhhc
Q 021791          151 SPSAETYNCFFKEYRGRKDANGAMKLYRQMKED  183 (307)
Q Consensus       151 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~  183 (307)
                      . +...+..+..+|...|++++|...|++..+.
T Consensus       305 ~-~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l  336 (370)
T 1ihg_A          305 S-NTKALYRRAQGWQGLKEYDQALADLKKAQEI  336 (370)
T ss_dssp             T-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             h-hHHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Confidence            1 3334444444444444444444444444443

>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}

Probab=98.36  E-value=2.3e-06  Score=56.82  Aligned_cols=87  Identities=10%  Similarity=0.059  Sum_probs=49.8

Q ss_pred             CCChhHHHHHHHHHhhcCCC-CccHHHHHHHHHHHHhcCcHHHHHHHHHHHhhCCCCCCHHhHHHHHHHHHccCcHHHHH
Q 021791          167 RKDANGAMKLYRQMKEDDLC-VPNIHTYNILIGMFMALNRMDMVREIWNHVKGSELGLDLDSYTMLIHGLCEKQKWKEAC  245 (307)
Q Consensus       167 ~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~  245 (307)
                      .|++++|...|++..+.+.. +.+...+..+...+...|++++|...+++....... +...+..+..++...|++++|.
T Consensus         3 ~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~   81 (117)
T 3k9i_A            3 LGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPN-HQALRVFYAMVLYNLGRYEQGV   81 (117)
T ss_dssp             ----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHH
T ss_pred             CCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-chHHHHHHHHHHHHcCCHHHHH
Confidence            45566666666666654200 234455666666666666666666666666655322 4556666666666666666666


Q ss_pred             HHHHHHHHc
Q 021791          246 QYFVEMIEK  254 (307)
Q Consensus       246 ~~~~~~~~~  254 (307)
                      ..+++.+..
T Consensus        82 ~~~~~al~~   90 (117)
T 3k9i_A           82 ELLLKIIAE   90 (117)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHh
Confidence            666666654

>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}

Probab=98.35  E-value=1.3e-05  Score=56.47  Aligned_cols=71  Identities=14%  Similarity=0.117  Sum_probs=55.1

Q ss_pred             ccHHHHHHHHHHHHhcCcHHHHHHHHHHHhhCCCCCCHHhHHHHHHHHHccCcHHHHHHHHHHHHHcCCCCcHh
Q 021791          188 PNIHTYNILIGMFMALNRMDMVREIWNHVKGSELGLDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKV  261 (307)
Q Consensus       188 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~  261 (307)
                      .+...|..+..+|.+.|++++|+..++....... .+...|..+..+|...|++++|...|++.++.  .|+..
T Consensus        61 ~~~~~~~nla~~~~~~~~~~~A~~~~~~al~~~p-~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l--~p~~~  131 (162)
T 3rkv_A           61 KNIPLYANMSQCYLNIGDLHEAEETSSEVLKREE-TNEKALFRRAKARIAAWKLDEAEEDLKLLLRN--HPAAA  131 (162)
T ss_dssp             THHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CGGGH
T ss_pred             HHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCC-cchHHHHHHHHHHHHHhcHHHHHHHHHHHHhc--CCCCH
Confidence            3456778888888888888888888888887642 36778888888888888888888888888865  45543

>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}

Probab=98.32  E-value=1.6e-05  Score=56.00  Aligned_cols=99  Identities=11%  Similarity=0.096  Sum_probs=67.3

Q ss_pred             HHHHHHHHHHHHhcCCchhHHHHHHHHHHc--------CC---------CCchhhHHHHHHHHHhcCChHHHHHHHHHHH
Q 021791           84 VTSFSIVLHVYSRAHKPQLSLDKLNFMKEK--------GI---------CPTVATYTSVVKCLCSCGRIEDAEELLGEMV  146 (307)
Q Consensus        84 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~--------~~---------~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~  146 (307)
                      ...+......+.+.|++++|+..|....+.        ..         +.+...|..+..+|.+.|++++|...+++..
T Consensus        11 a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al   90 (162)
T 3rkv_A           11 VEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVL   90 (162)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence            445667777888889999998888887664        00         1123456666677777777777777777776


Q ss_pred             hCCCCCCHhhHHHHHHHHhcCCChhHHHHHHHHHhhc
Q 021791          147 RNGVSPSAETYNCFFKEYRGRKDANGAMKLYRQMKED  183 (307)
Q Consensus       147 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~  183 (307)
                      ..... +...|..+..+|...|++++|...|++....
T Consensus        91 ~~~p~-~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l  126 (162)
T 3rkv_A           91 KREET-NEKALFRRAKARIAAWKLDEAEEDLKLLLRN  126 (162)
T ss_dssp             HHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             hcCCc-chHHHHHHHHHHHHHhcHHHHHHHHHHHHhc
Confidence            65432 5566666777777777777777777776665

>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}

Probab=98.28  E-value=5.3e-06  Score=66.32  Aligned_cols=60  Identities=15%  Similarity=-0.011  Sum_probs=28.6

Q ss_pred             HHHHHHHHHHhcCcHHHHHHHHHHHhhCCCCCCHHhHHHHHHHHHccCcHHHHHHHHHHHH
Q 021791          192 TYNILIGMFMALNRMDMVREIWNHVKGSELGLDLDSYTMLIHGLCEKQKWKEACQYFVEMI  252 (307)
Q Consensus       192 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~  252 (307)
                      .|..+..++.+.|++++|+..++....... .+...|..+..+|...|++++|...|++.+
T Consensus       232 ~~~nla~~~~~~g~~~~A~~~~~~al~~~p-~~~~a~~~lg~a~~~~g~~~~A~~~l~~al  291 (338)
T 2if4_A          232 CHLNIAACLIKLKRYDEAIGHCNIVLTEEE-KNPKALFRRGKAKAELGQMDSARDDFRKAQ  291 (338)
T ss_dssp             HHHHHHHHHHTTTCCHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHTTTCHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            344444445555555555555554444321 134444445555555555555555555444

>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}

Probab=98.26  E-value=6.5e-06  Score=65.80  Aligned_cols=147  Identities=10%  Similarity=-0.029  Sum_probs=77.3

Q ss_pred             HHHHHHHHHHhcCCchhHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHh
Q 021791           86 SFSIVLHVYSRAHKPQLSLDKLNFMKEKGICPTVATYTSVVKCLCSCGRIEDAEELLGEMVRNGVSPSAETYNCFFKEYR  165 (307)
Q Consensus        86 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~  165 (307)
                      .+..+...+.+.|++++|...|++..+..  |+...       +...++.+++...+          ....|..+..+|.
T Consensus       181 ~~~~~g~~~~~~g~~~~A~~~y~~Al~~~--p~~~~-------~~~~~~~~~~~~~l----------~~~~~~nla~~~~  241 (338)
T 2if4_A          181 RRKMDGNSLFKEEKLEEAMQQYEMAIAYM--GDDFM-------FQLYGKYQDMALAV----------KNPCHLNIAACLI  241 (338)
T ss_dssp             HHHHHHHHTCSSSCCHHHHHHHHHHHHHS--CHHHH-------HTCCHHHHHHHHHH----------HTHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHHHh--ccchh-------hhhcccHHHHHHHH----------HHHHHHHHHHHHH
Confidence            45556666777778888888777776652  23221       12222233322211          1136777888888


Q ss_pred             cCCChhHHHHHHHHHhhcCCCCccHHHHHHHHHHHHhcCcHHHHHHHHHHHhhCCCCCCHHhHHHHHHH-HHccCcHHHH
Q 021791          166 GRKDANGAMKLYRQMKEDDLCVPNIHTYNILIGMFMALNRMDMVREIWNHVKGSELGLDLDSYTMLIHG-LCEKQKWKEA  244 (307)
Q Consensus       166 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~-~~~~g~~~~a  244 (307)
                      +.|++++|...+++.....  +.+...+..+..+|...|++++|...|+........ +...+..+... ....+..+++
T Consensus       242 ~~g~~~~A~~~~~~al~~~--p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~-~~~a~~~L~~l~~~~~~~~~~a  318 (338)
T 2if4_A          242 KLKRYDEAIGHCNIVLTEE--EKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPD-DKAIRRELRALAEQEKALYQKQ  318 (338)
T ss_dssp             TTTCCHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC---------------------------
T ss_pred             HcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHHHHHHHHH
Confidence            8999999999998888775  567788888888999999999999999888765322 34445555444 2345667788


Q ss_pred             HHHHHHHHHc
Q 021791          245 CQYFVEMIEK  254 (307)
Q Consensus       245 ~~~~~~~~~~  254 (307)
                      ...|.+|.+.
T Consensus       319 ~~~~~~~l~~  328 (338)
T 2if4_A          319 KEMYKGIFKG  328 (338)
T ss_dssp             ----------
T ss_pred             HHHHHHhhCC
Confidence            8888888754

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=98.26  E-value=0.00029  Score=60.30  Aligned_cols=170  Identities=8%  Similarity=-0.040  Sum_probs=133.9

Q ss_pred             chhHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCC----------hHHHHHHHHHHHhCCCCCCHhhHHHHHHHHhcCC-
Q 021791          100 PQLSLDKLNFMKEKGICPTVATYTSVVKCLCSCGR----------IEDAEELLGEMVRNGVSPSAETYNCFFKEYRGRK-  168 (307)
Q Consensus       100 ~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~----------~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-  168 (307)
                      .++|++.++.+...... +..+|+.--.++.+.|+          +++++..++.+.....+ +..+|+.-...+.+.+ 
T Consensus        45 ~eeal~~~~~~l~~nP~-~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK-~y~aW~hR~w~l~~l~~  122 (567)
T 1dce_A           45 DESVLELTSQILGANPD-FATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPK-SYGTWHHRCWLLSRLPE  122 (567)
T ss_dssp             SHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTCSS
T ss_pred             CHHHHHHHHHHHHHCch-hHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHccc
Confidence            46789999999887644 56677766666666666          89999999999988665 7888888888888888 


Q ss_pred             -ChhHHHHHHHHHhhcCCCCccHHHHHHHHHHHHhcC-cHHHHHHHHHHHhhCCCCCCHHhHHHHHHHHHcc--------
Q 021791          169 -DANGAMKLYRQMKEDDLCVPNIHTYNILIGMFMALN-RMDMVREIWNHVKGSELGLDLDSYTMLIHGLCEK--------  238 (307)
Q Consensus       169 -~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~--------  238 (307)
                       ++++++..++++.+.+  +-|..+|+.-...+.+.| .++++.+.++.+.+..+. +..+|+.....+.+.        
T Consensus       123 ~~~~~el~~~~k~l~~d--~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~-n~saW~~r~~ll~~l~~~~~~~~  199 (567)
T 1dce_A          123 PNWARELELCARFLEAD--ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFS-NYSSWHYRSCLLPQLHPQPDSGP  199 (567)
T ss_dssp             CCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCC-CHHHHHHHHHHHHHHSCCCCSSS
T ss_pred             ccHHHHHHHHHHHHhhc--cccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCC-CccHHHHHHHHHHhhcccccccc
Confidence             6699999999999987  678899998888888888 899999999999887654 788888777666542        


Q ss_pred             ------CcHHHHHHHHHHHHHcCCCCcHhhHHHHHHHHhhchh
Q 021791          239 ------QKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQSDM  275 (307)
Q Consensus       239 ------g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~  275 (307)
                            +.++++++.+.+.+... +-|...|..+-..+.+.+.
T Consensus       200 ~~~~~~~~~~eel~~~~~ai~~~-P~~~saW~y~~~ll~~~~~  241 (567)
T 1dce_A          200 QGRLPENVLLKELELVQNAFFTD-PNDQSAWFYHRWLLGRAEP  241 (567)
T ss_dssp             CCSSCHHHHHHHHHHHHHHHHHC-SSCSHHHHHHHHHHSCCCC
T ss_pred             cccccHHHHHHHHHHHHHHHhhC-CCCccHHHHHHHHHhcCCC
Confidence                  66899999999998763 2345566666666666554

>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}

Probab=98.24  E-value=1.5e-05  Score=66.70  Aligned_cols=127  Identities=10%  Similarity=-0.019  Sum_probs=96.1

Q ss_pred             HHhcCCChhHHHHHHHHHhhcCC--C----CccHHHHHHHHHHHHhcCcHHHHHHHHHHHhh-----CCC-CCC-HHhHH
Q 021791          163 EYRGRKDANGAMKLYRQMKEDDL--C----VPNIHTYNILIGMFMALNRMDMVREIWNHVKG-----SEL-GLD-LDSYT  229 (307)
Q Consensus       163 ~~~~~~~~~~a~~~~~~~~~~~~--~----~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-----~~~-~~~-~~~~~  229 (307)
                      .+...|++++|..++++......  .    +....+++.|..+|...|++++|+.++++...     .|. .|+ ..+++
T Consensus       318 ~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~  397 (490)
T 3n71_A          318 KARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVM  397 (490)
T ss_dssp             HHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHH
T ss_pred             HHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHH
Confidence            35688999999999988765311  1    12356789999999999999999999988664     121 222 34689


Q ss_pred             HHHHHHHccCcHHHHHHHHHHHHHc-----CC-CCcH-hhHHHHHHHHhhchhHHHHHHHHHHhhhc
Q 021791          230 MLIHGLCEKQKWKEACQYFVEMIEK-----GL-LPQK-VTFETLYRGLIQSDMLRTWRRLKKKLDEE  289 (307)
Q Consensus       230 ~li~~~~~~g~~~~a~~~~~~~~~~-----~~-~p~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~~  289 (307)
                      .|...|...|++++|..++++.++-     |- .|+. .+...+-.++...|.+++|+.+++++++.
T Consensus       398 nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~~  464 (490)
T 3n71_A          398 RAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMREA  464 (490)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999988653     31 2332 34566667888999999999999998763

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=98.22  E-value=0.00029  Score=60.34  Aligned_cols=186  Identities=5%  Similarity=-0.046  Sum_probs=140.4

Q ss_pred             hcCc-hhhHHHHHHHHHhcCCCCcHHHHHHHHHHHHhhCCCCcchhhHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHH
Q 021791           16 KINR-IDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPNERFEKTIRNAEKVFDEMRVRGIEPDVTSFSIVLHVY   94 (307)
Q Consensus        16 ~~g~-~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~   94 (307)
                      +.|. .++|++.++++...+.. +...|+.--.++...++-.........++++++.++.+.+.. +-+..+|+.-..++
T Consensus        40 ~~~~~~eeal~~~~~~l~~nP~-~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~-pK~y~aW~hR~w~l  117 (567)
T 1dce_A           40 QAGELDESVLELTSQILGANPD-FATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYGTWHHRCWLL  117 (567)
T ss_dssp             HTTCCSHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred             HcCCCCHHHHHHHHHHHHHCch-hHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHH
Confidence            3444 46889999999987322 556777776666663221111112233899999999999875 34788899888888


Q ss_pred             HhcC--CchhHHHHHHHHHHcCCCCchhhHHHHHHHHHhcC-ChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHhcC----
Q 021791           95 SRAH--KPQLSLDKLNFMKEKGICPTVATYTSVVKCLCSCG-RIEDAEELLGEMVRNGVSPSAETYNCFFKEYRGR----  167 (307)
Q Consensus        95 ~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----  167 (307)
                      .+.+  +++++++.++.+.+.... +..+|+.-...+.+.| .++++.+.++++.+.++. +...|+.....+.+.    
T Consensus       118 ~~l~~~~~~~el~~~~k~l~~d~~-N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~-n~saW~~r~~ll~~l~~~~  195 (567)
T 1dce_A          118 SRLPEPNWARELELCARFLEADER-NFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFS-NYSSWHYRSCLLPQLHPQP  195 (567)
T ss_dssp             HTCSSCCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCC-CHHHHHHHHHHHHHHSCCC
T ss_pred             HHcccccHHHHHHHHHHHHhhccc-cccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCC-CccHHHHHHHHHHhhcccc
Confidence            9999  669999999999998765 8888988888888888 899999999999887665 778887766665542    


Q ss_pred             ----------CChhHHHHHHHHHhhcCCCCccHHHHHHHHHHHHhcCcHH
Q 021791          168 ----------KDANGAMKLYRQMKEDDLCVPNIHTYNILIGMFMALNRMD  207 (307)
Q Consensus       168 ----------~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~  207 (307)
                                +.++++++.+.+.....  +-|...|.-+-..+.+.++.+
T Consensus       196 ~~~~~~~~~~~~~~eel~~~~~ai~~~--P~~~saW~y~~~ll~~~~~~~  243 (567)
T 1dce_A          196 DSGPQGRLPENVLLKELELVQNAFFTD--PNDQSAWFYHRWLLGRAEPHD  243 (567)
T ss_dssp             CSSSCCSSCHHHHHHHHHHHHHHHHHC--SSCSHHHHHHHHHHSCCCCCS
T ss_pred             cccccccccHHHHHHHHHHHHHHHhhC--CCCccHHHHHHHHHhcCCCcc
Confidence                      45688999998888775  677888888877777766633

>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8

Probab=98.19  E-value=4.4e-05  Score=52.98  Aligned_cols=28  Identities=11%  Similarity=-0.024  Sum_probs=17.1

Q ss_pred             hHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 021791          121 TYTSVVKCLCSCGRIEDAEELLGEMVRN  148 (307)
Q Consensus       121 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~  148 (307)
                      .+......+.+.|++++|...|++..+.
T Consensus        13 ~~~~~G~~l~~~g~~eeAi~~Y~kAL~l   40 (159)
T 2hr2_A           13 LALSDAQRQLVAGEYDEAAANCRRAMEI   40 (159)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHhh
Confidence            3444555566666666666666666654

>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1

Probab=98.16  E-value=0.00018  Score=49.11  Aligned_cols=112  Identities=10%  Similarity=-0.035  Sum_probs=84.5

Q ss_pred             HHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCchhHHHHHHHHHHcCCCCchhhHHHHHHHHHh----cCChHH
Q 021791           62 EKTIRNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHKPQLSLDKLNFMKEKGICPTVATYTSVVKCLCS----CGRIED  137 (307)
Q Consensus        62 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~----~~~~~~  137 (307)
                      .+++++|.++|++..+.| .|+..    |...|...+..++|.+.|++..+.|   +...+..+...|..    .+++++
T Consensus         8 ~~d~~~A~~~~~~aa~~g-~~~a~----lg~~y~~g~~~~~A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~   79 (138)
T 1klx_A            8 KKDLKKAIQYYVKACELN-EMFGC----LSLVSNSQINKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLRK   79 (138)
T ss_dssp             HHHHHHHHHHHHHHHHTT-CTTHH----HHHHTCTTSCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHH
T ss_pred             ccCHHHHHHHHHHHHcCC-CHhhh----HHHHHHcCCCHHHHHHHHHHHHcCC---CHHHHHHHHHHHHcCCCCCccHHH
Confidence            678888999998888887 33433    6666666677778888888887774   66677777777877    778888


Q ss_pred             HHHHHHHHHhCCCCCCHhhHHHHHHHHhc----CCChhHHHHHHHHHhhcC
Q 021791          138 AEELLGEMVRNGVSPSAETYNCFFKEYRG----RKDANGAMKLYRQMKEDD  184 (307)
Q Consensus       138 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~  184 (307)
                      |...|++..+.|   +...+..+...|..    .+++++|...|++..+.+
T Consensus        80 A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g  127 (138)
T 1klx_A           80 AAQYYSKACGLN---DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLG  127 (138)
T ss_dssp             HHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHcCC---CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCC
Confidence            888888887764   56667777777777    778888888888777765

>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}

Probab=98.14  E-value=4e-05  Score=50.41  Aligned_cols=80  Identities=10%  Similarity=-0.034  Sum_probs=53.8

Q ss_pred             HHHHHHHHHhhcCCCCccHHHHHHHHHHHHhcCcHHHHHHHHHHHhhCCCCCCHHhHHHHHHHHHccCcHHHHHHHHHHH
Q 021791          172 GAMKLYRQMKEDDLCVPNIHTYNILIGMFMALNRMDMVREIWNHVKGSELGLDLDSYTMLIHGLCEKQKWKEACQYFVEM  251 (307)
Q Consensus       172 ~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~  251 (307)
                      .+...|++..+..  +.+...+..+...+...|++++|...++....... .+...|..+..+|...|++++|...|++.
T Consensus         3 ~a~~~~~~al~~~--p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~a   79 (115)
T 2kat_A            3 AITERLEAMLAQG--TDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDP-TYSVAWKWLGKTLQGQGDRAGARQAWESG   79 (115)
T ss_dssp             CHHHHHHHHHTTT--CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhC--CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCC-CcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            4556666666554  45566777777777777777777777777766532 24566777777777777777777777776


Q ss_pred             HHc
Q 021791          252 IEK  254 (307)
Q Consensus       252 ~~~  254 (307)
                      ++.
T Consensus        80 l~~   82 (115)
T 2kat_A           80 LAA   82 (115)
T ss_dssp             HHH
T ss_pred             HHh
Confidence            653

>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}

Probab=98.12  E-value=2.3e-05  Score=65.50  Aligned_cols=126  Identities=10%  Similarity=-0.077  Sum_probs=94.8

Q ss_pred             HHhcCChHHHHHHHHHHHhC-----CC-CC-CHhhHHHHHHHHhcCCChhHHHHHHHHHhhc-----CCCCc-cHHHHHH
Q 021791          129 LCSCGRIEDAEELLGEMVRN-----GV-SP-SAETYNCFFKEYRGRKDANGAMKLYRQMKED-----DLCVP-NIHTYNI  195 (307)
Q Consensus       129 ~~~~~~~~~a~~~~~~~~~~-----~~-~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~~~~~-~~~~~~~  195 (307)
                      +...|++++|+.++++..+.     |. .| ...+++.|...|...|++++|..++++....     |...| ...+++.
T Consensus       319 ~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~n  398 (490)
T 3n71_A          319 ARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMR  398 (490)
T ss_dssp             HHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHH
T ss_pred             HHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHH
Confidence            55789999999999887753     11 12 2457899999999999999999998886542     21123 3567899


Q ss_pred             HHHHHHhcCcHHHHHHHHHHHhh-----CCCC-CC-HHhHHHHHHHHHccCcHHHHHHHHHHHHHc
Q 021791          196 LIGMFMALNRMDMVREIWNHVKG-----SELG-LD-LDSYTMLIHGLCEKQKWKEACQYFVEMIEK  254 (307)
Q Consensus       196 l~~~~~~~~~~~~a~~~~~~~~~-----~~~~-~~-~~~~~~li~~~~~~g~~~~a~~~~~~~~~~  254 (307)
                      |...|...|++++|+.++++...     .|.. |+ ..+.+.+-.++...+.+++|..++.++++.
T Consensus       399 La~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~~  464 (490)
T 3n71_A          399 AGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMREA  464 (490)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999987664     2221 22 334566777888899999999999998764

>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8

Probab=98.08  E-value=6.8e-05  Score=52.04  Aligned_cols=100  Identities=14%  Similarity=-0.021  Sum_probs=73.5

Q ss_pred             hhHHHHHHHHhcCCChhHHHHHHHHHhhcCCCCc-----cH-----HHHHHHHHHHHhcCcHHHHHHHHHHHhhC-----
Q 021791          155 ETYNCFFKEYRGRKDANGAMKLYRQMKEDDLCVP-----NI-----HTYNILIGMFMALNRMDMVREIWNHVKGS-----  219 (307)
Q Consensus       155 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-----~~-----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----  219 (307)
                      ..+......+.+.|++++|...|++..+.....|     +.     ..|..+..++.+.|++++|+..++.....     
T Consensus        12 ~~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~   91 (159)
T 2hr2_A           12 YLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRG   91 (159)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccc
Confidence            3445566677888999999999998887642101     22     37888888888889998888888888764     


Q ss_pred             CCCC-CHHhH----HHHHHHHHccCcHHHHHHHHHHHHHc
Q 021791          220 ELGL-DLDSY----TMLIHGLCEKQKWKEACQYFVEMIEK  254 (307)
Q Consensus       220 ~~~~-~~~~~----~~li~~~~~~g~~~~a~~~~~~~~~~  254 (307)
                      .+.| +...|    .....++...|++++|+..|++.++.
T Consensus        92 e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel  131 (159)
T 2hr2_A           92 ELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEM  131 (159)
T ss_dssp             CTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             cCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhc
Confidence            1133 44567    77888888888888888888888764

>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1

Probab=98.07  E-value=0.00037  Score=47.53  Aligned_cols=110  Identities=10%  Similarity=0.040  Sum_probs=62.7

Q ss_pred             ChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHhcCCChhHHHHHHHHHhhcCCCCccHHHHHHHHHHHHh----cCcHHHH
Q 021791          134 RIEDAEELLGEMVRNGVSPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDDLCVPNIHTYNILIGMFMA----LNRMDMV  209 (307)
Q Consensus       134 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a  209 (307)
                      ++++|...|++..+.|. |+..    +...|...+..++|...|++..+.+    +...+..|...|..    .++.++|
T Consensus        10 d~~~A~~~~~~aa~~g~-~~a~----lg~~y~~g~~~~~A~~~~~~Aa~~g----~~~a~~~Lg~~y~~G~g~~~d~~~A   80 (138)
T 1klx_A           10 DLKKAIQYYVKACELNE-MFGC----LSLVSNSQINKQKLFQYLSKACELN----SGNGCRFLGDFYENGKYVKKDLRKA   80 (138)
T ss_dssp             HHHHHHHHHHHHHHTTC-TTHH----HHHHTCTTSCHHHHHHHHHHHHHTT----CHHHHHHHHHHHHHCSSSCCCHHHH
T ss_pred             CHHHHHHHHHHHHcCCC-Hhhh----HHHHHHcCCCHHHHHHHHHHHHcCC----CHHHHHHHHHHHHcCCCCCccHHHH
Confidence            45556666666555542 1222    4444555555555666666665543    34455555555555    5666666


Q ss_pred             HHHHHHHhhCCCCCCHHhHHHHHHHHHc----cCcHHHHHHHHHHHHHcC
Q 021791          210 REIWNHVKGSELGLDLDSYTMLIHGLCE----KQKWKEACQYFVEMIEKG  255 (307)
Q Consensus       210 ~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~a~~~~~~~~~~~  255 (307)
                      .+.|+...+.|   +...+..+...|..    .+++++|..+|++..+.|
T Consensus        81 ~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g  127 (138)
T 1klx_A           81 AQYYSKACGLN---DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLG  127 (138)
T ss_dssp             HHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHcCC---CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCC
Confidence            66666666553   45555666666655    566666766666666655

>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}

Probab=98.06  E-value=3.5e-05  Score=50.71  Aligned_cols=60  Identities=13%  Similarity=0.114  Sum_probs=24.0

Q ss_pred             hhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHhcCCChhHHHHHHHHH
Q 021791          120 ATYTSVVKCLCSCGRIEDAEELLGEMVRNGVSPSAETYNCFFKEYRGRKDANGAMKLYRQM  180 (307)
Q Consensus       120 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~  180 (307)
                      ..+..+...|...|++++|...|++....... +...|..+..++...|++++|...|++.
T Consensus        20 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~a   79 (115)
T 2kat_A           20 LLRFTLGKTYAEHEQFDAALPHLRAALDFDPT-YSVAWKWLGKTLQGQGDRAGARQAWESG   79 (115)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHccCHHHHHHHHHHHHHHCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            33344444444444444444444444333211 2333333444444444444444444433

>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}

Probab=98.06  E-value=5.8e-06  Score=53.97  Aligned_cols=65  Identities=6%  Similarity=0.007  Sum_probs=47.8

Q ss_pred             cHHHHHHHHHHHHhcCcHHHHHHHHHHHhhCCCCCCHHhHHHHHHHHHccCcHHHHHHHHHHHHHc
Q 021791          189 NIHTYNILIGMFMALNRMDMVREIWNHVKGSELGLDLDSYTMLIHGLCEKQKWKEACQYFVEMIEK  254 (307)
Q Consensus       189 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~  254 (307)
                      +...+..+...+...|++++|.+.++....... .+...+..+..++...|++++|+..+++.++.
T Consensus         3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~   67 (111)
T 2l6j_A            3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQP-QNPVGYSNKAMALIKLGEYTQAIQMCQQGLRY   67 (111)
T ss_dssp             HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS
T ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence            455667777777778888888888877776532 25677777777888888888888888887754

>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A

Probab=97.98  E-value=0.00014  Score=45.27  Aligned_cols=23  Identities=17%  Similarity=0.288  Sum_probs=8.8

Q ss_pred             HHHHHHHhcCCChhHHHHHHHHH
Q 021791          158 NCFFKEYRGRKDANGAMKLYRQM  180 (307)
Q Consensus       158 ~~l~~~~~~~~~~~~a~~~~~~~  180 (307)
                      ..+...+...|++++|...+++.
T Consensus        47 ~~l~~~~~~~~~~~~A~~~~~~a   69 (91)
T 1na3_A           47 YNLGNAYYKQGDYDEAIEYYQKA   69 (91)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhhHHHHHHHHHHH
Confidence            33333333333333333333333

>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}

Probab=97.97  E-value=4.1e-05  Score=49.80  Aligned_cols=60  Identities=10%  Similarity=0.032  Sum_probs=23.4

Q ss_pred             HHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHhcCCChhHHHHHHHHHhh
Q 021791          122 YTSVVKCLCSCGRIEDAEELLGEMVRNGVSPSAETYNCFFKEYRGRKDANGAMKLYRQMKE  182 (307)
Q Consensus       122 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~  182 (307)
                      +..+...+...|++++|...|++....... +...+..+..++...|++++|...+++...
T Consensus         7 ~~~~g~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~   66 (111)
T 2l6j_A            7 QKEQGNSLFKQGLYREAVHCYDQLITAQPQ-NPVGYSNKAMALIKLGEYTQAIQMCQQGLR   66 (111)
T ss_dssp             HHHHHHHHHTTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence            333333444444444444444443333211 233333334444444444444444444433

>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A

Probab=97.87  E-value=0.00021  Score=44.34  Aligned_cols=80  Identities=11%  Similarity=0.130  Sum_probs=44.1

Q ss_pred             HHHHHHHHHHHHhcCcHHHHHHHHHHHhhCCCCCCHHhHHHHHHHHHccCcHHHHHHHHHHHHHcCCCCcHhhHHHHHHH
Q 021791          190 IHTYNILIGMFMALNRMDMVREIWNHVKGSELGLDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRG  269 (307)
Q Consensus       190 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~  269 (307)
                      ...+..+...+...|++++|...++...... +.+...+..+..++...|++++|...+++..+.. +.+...+..+..+
T Consensus         9 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~l~~~   86 (91)
T 1na3_A            9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAKQNLGNA   86 (91)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCHHHHHHHHHH
Confidence            4455555566666666666666666655542 1245555666666666666666666666666542 2233444444444


Q ss_pred             Hh
Q 021791          270 LI  271 (307)
Q Consensus       270 ~~  271 (307)
                      +.
T Consensus        87 ~~   88 (91)
T 1na3_A           87 KQ   88 (91)
T ss_dssp             HH
T ss_pred             HH
Confidence            43

>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A

Probab=97.83  E-value=0.00015  Score=46.31  Aligned_cols=66  Identities=11%  Similarity=0.076  Sum_probs=44.2

Q ss_pred             CccHHHHHHHHHHHHhcCcHHHHHHHHHHHhhCCCCCCHHhHHHHHHHHHccCcHHHHHHHHHHHHH
Q 021791          187 VPNIHTYNILIGMFMALNRMDMVREIWNHVKGSELGLDLDSYTMLIHGLCEKQKWKEACQYFVEMIE  253 (307)
Q Consensus       187 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~  253 (307)
                      +.+...+..+...+...|++++|+..|+...+.... +...|..+..+|...|++++|...|++.++
T Consensus         4 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~g~~~~A~~~~~~al~   69 (100)
T 3ma5_A            4 PEDPFTRYALAQEHLKHDNASRALALFEELVETDPD-YVGTYYHLGKLYERLDRTDDAIDTYAQGIE   69 (100)
T ss_dssp             -CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CTHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             ccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence            345566667777777777777777777777665422 455667777777777777777777776654

>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A

Probab=97.81  E-value=9.4e-05  Score=47.30  Aligned_cols=60  Identities=15%  Similarity=0.048  Sum_probs=25.4

Q ss_pred             HHHHHHHHHHHhcCCchhHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCChHHHHHHHHHH
Q 021791           85 TSFSIVLHVYSRAHKPQLSLDKLNFMKEKGICPTVATYTSVVKCLCSCGRIEDAEELLGEM  145 (307)
Q Consensus        85 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~  145 (307)
                      ..+..+..++...|++++|+..|+...+.... +...|..+..+|...|++++|...|++.
T Consensus         8 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~g~~~~A~~~~~~a   67 (100)
T 3ma5_A            8 FTRYALAQEHLKHDNASRALALFEELVETDPD-YVGTYYHLGKLYERLDRTDDAIDTYAQG   67 (100)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CTHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            33444444444444444444444444443221 3334444444444444444444444443

>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1

Probab=97.80  E-value=8.6e-05  Score=51.42  Aligned_cols=94  Identities=6%  Similarity=0.080  Sum_probs=48.4

Q ss_pred             hhHHHHHHHHHhhcCCCCccHHHHHHHHHHHHhcCc----------HHHHHHHHHHHhhCCCCCCHHhHHHHHHHHHcc-
Q 021791          170 ANGAMKLYRQMKEDDLCVPNIHTYNILIGMFMALNR----------MDMVREIWNHVKGSELGLDLDSYTMLIHGLCEK-  238 (307)
Q Consensus       170 ~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~----------~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~-  238 (307)
                      +++|...++...+..  +.+...|..+..++...++          +++|+..|++..+.+.. +..+|..+-.+|... 
T Consensus        18 feeA~~~~~~Ai~l~--P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~-~~~A~~~LG~ay~~lg   94 (158)
T 1zu2_A           18 FEQIRQDAENTYKSN--PLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPK-KDEAVWCIGNAYTSFA   94 (158)
T ss_dssp             HHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcC-cHHHHHHHHHHHHHhc
Confidence            344444444444443  3344444444444444333          33555555555554322 444555555555544 


Q ss_pred             ----------CcHHHHHHHHHHHHHcCCCCcHhhHHHHHH
Q 021791          239 ----------QKWKEACQYFVEMIEKGLLPQKVTFETLYR  268 (307)
Q Consensus       239 ----------g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~  268 (307)
                                |++++|+..|++.++.  .|+...|...+.
T Consensus        95 ~l~P~~~~a~g~~~eA~~~~~kAl~l--~P~~~~y~~al~  132 (158)
T 1zu2_A           95 FLTPDETEAKHNFDLATQFFQQAVDE--QPDNTHYLKSLE  132 (158)
T ss_dssp             HHCCCHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHH
T ss_pred             ccCcchhhhhccHHHHHHHHHHHHHh--CCCCHHHHHHHH
Confidence                      4778888888887764  566555544443

>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1

Probab=97.77  E-value=9.3e-05  Score=51.26  Aligned_cols=95  Identities=7%  Similarity=0.056  Sum_probs=52.5

Q ss_pred             ChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHhcCCC----------hhHHHHHHHHHhhcCCCCccHHHHHHHHHHHHhc
Q 021791          134 RIEDAEELLGEMVRNGVSPSAETYNCFFKEYRGRKD----------ANGAMKLYRQMKEDDLCVPNIHTYNILIGMFMAL  203 (307)
Q Consensus       134 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~----------~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  203 (307)
                      .+++|...++...+.... +...|..+..++...++          +++|+..|++..+.+  +.+..+|..+..+|...
T Consensus        17 ~feeA~~~~~~Ai~l~P~-~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ld--P~~~~A~~~LG~ay~~l   93 (158)
T 1zu2_A           17 LFEQIRQDAENTYKSNPL-DADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLID--PKKDEAVWCIGNAYTSF   93 (158)
T ss_dssp             HHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhC--cCcHHHHHHHHHHHHHh
Confidence            344444444444443322 34444444444443333          346666666666664  44556666666666655


Q ss_pred             -----------CcHHHHHHHHHHHhhCCCCCCHHhHHHHHH
Q 021791          204 -----------NRMDMVREIWNHVKGSELGLDLDSYTMLIH  233 (307)
Q Consensus       204 -----------~~~~~a~~~~~~~~~~~~~~~~~~~~~li~  233 (307)
                                 |++++|.+.|++..+.  .|+...|...+.
T Consensus        94 g~l~P~~~~a~g~~~eA~~~~~kAl~l--~P~~~~y~~al~  132 (158)
T 1zu2_A           94 AFLTPDETEAKHNFDLATQFFQQAVDE--QPDNTHYLKSLE  132 (158)
T ss_dssp             HHHCCCHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHH
T ss_pred             cccCcchhhhhccHHHHHHHHHHHHHh--CCCCHHHHHHHH
Confidence                       4788888888888775  455555544443

>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A

Probab=97.70  E-value=0.0018  Score=51.41  Aligned_cols=76  Identities=16%  Similarity=0.045  Sum_probs=62.5

Q ss_pred             CccHHHHHHHHHHHHhcCcHHHHHHHHHHHhhCCCCCCHHhHHHHHHHHHccCcHHHHHHHHHHHHHcCCCCcHhhHHHH
Q 021791          187 VPNIHTYNILIGMFMALNRMDMVREIWNHVKGSELGLDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETL  266 (307)
Q Consensus       187 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l  266 (307)
                      +.+..++..+...+...|++++|...++++...+  |+...|..+-..+.-.|++++|.+.|++....  .|...||...
T Consensus       274 ~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln--~s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL--~P~~~t~~~~  349 (372)
T 3ly7_A          274 NNLSIIYQIKAVSALVKGKTDESYQAINTGIDLE--MSWLNYVLLGKVYEMKGMNREAADAYLTAFNL--RPGANTLYWI  349 (372)
T ss_dssp             TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--SCSHHHHHHH
T ss_pred             CcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCcChHHHH
Confidence            6678888888777777899999999999999875  68777777788888999999999999998875  5777776543

>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A

Probab=97.69  E-value=0.0046  Score=49.17  Aligned_cols=140  Identities=10%  Similarity=0.014  Sum_probs=73.8

Q ss_pred             CCCcHHHHHHHHHHHHhhCCCCcchhhHHHHHHHHHHHHHHHhcCCCCC-HHHHHHHHHHHHh---cC-Cc-hhHHH---
Q 021791           35 VEPNVVTYNVLLNGVCRRASLHPNERFEKTIRNAEKVFDEMRVRGIEPD-VTSFSIVLHVYSR---AH-KP-QLSLD---  105 (307)
Q Consensus        35 ~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~ll~~~~~---~~-~~-~~a~~---  105 (307)
                      .+.+...|...+++........     .....+|..+|++..+.  .|+ ...|..+.-++..   .+ .. .....   
T Consensus       190 ~p~~~~Aydl~Lra~~~l~~~~-----~~~~~~A~~l~e~Al~l--DP~~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~  262 (372)
T 3ly7_A          190 LPHRGALLTNFYQAHDYLLHGD-----DKSLNRASELLGEIVQS--SPEFTYARAEKALVDIVRHSQHPLDEKQLAALNT  262 (372)
T ss_dssp             SCSSGGGHHHHHHHHHHHHHCS-----HHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHHHcCC-----HHHHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHhccCCCchhhHHHHHH
Confidence            3556777888777665432211     56678888899888877  343 3444444444331   11 00 01111   


Q ss_pred             HHHHHHH-cCCCCchhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHhcCCChhHHHHHHHHHhhc
Q 021791          106 KLNFMKE-KGICPTVATYTSVVKCLCSCGRIEDAEELLGEMVRNGVSPSAETYNCFFKEYRGRKDANGAMKLYRQMKED  183 (307)
Q Consensus       106 ~~~~~~~-~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~  183 (307)
                      .+..... ...+.+..+|..+...+...|++++|...+++....+  |+...|..+...+.-.|++++|.+.+++....
T Consensus       263 a~~a~~a~~~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln--~s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL  339 (372)
T 3ly7_A          263 EIDNIVTLPELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLE--MSWLNYVLLGKVYEMKGMNREAADAYLTAFNL  339 (372)
T ss_dssp             HHHHHHTCGGGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHhcccCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence            1111100 1113355555555555555566666666666666553  45555555555566666666666666666555

>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}

Probab=97.23  E-value=0.0027  Score=40.00  Aligned_cols=57  Identities=14%  Similarity=0.249  Sum_probs=36.1

Q ss_pred             HHHHHhcCcHHHHHHHHHHHhhCCCCCCHH-hHHHHHHHHHccCcHHHHHHHHHHHHHc
Q 021791          197 IGMFMALNRMDMVREIWNHVKGSELGLDLD-SYTMLIHGLCEKQKWKEACQYFVEMIEK  254 (307)
Q Consensus       197 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~li~~~~~~g~~~~a~~~~~~~~~~  254 (307)
                      ...+...|++++|...++...+... .+.. .+..+..+|...|++++|...|++.++.
T Consensus         7 a~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~   64 (99)
T 2kc7_A            7 IKELINQGDIENALQALEEFLQTEP-VGKDEAYYLMGNAYRKLGDWQKALNNYQSAIEL   64 (99)
T ss_dssp             HHHHHHHTCHHHHHHHHHHHHHHCS-STHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHHCC-CcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence            3455566677777777766665432 2445 6666666667777777777777776654

>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*

Probab=97.19  E-value=0.0018  Score=53.33  Aligned_cols=88  Identities=8%  Similarity=0.032  Sum_probs=60.3

Q ss_pred             cCCChhHHHHHHHHHhhcC--CCC---c-cHHHHHHHHHHHHhcCcHHHHHHHHHHHhh-----CC-CCCC-HHhHHHHH
Q 021791          166 GRKDANGAMKLYRQMKEDD--LCV---P-NIHTYNILIGMFMALNRMDMVREIWNHVKG-----SE-LGLD-LDSYTMLI  232 (307)
Q Consensus       166 ~~~~~~~a~~~~~~~~~~~--~~~---~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-----~~-~~~~-~~~~~~li  232 (307)
                      ..|++++|..++++.....  ...   | ...+++.|..+|...|++++|+.++++...     .| -.|+ ..+++.|.
T Consensus       310 ~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa  389 (433)
T 3qww_A          310 HYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLG  389 (433)
T ss_dssp             TTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHH
T ss_pred             hccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHH
Confidence            4567788888887765421  111   2 246678888888888888888888877653     12 1222 34578888


Q ss_pred             HHHHccCcHHHHHHHHHHHHH
Q 021791          233 HGLCEKQKWKEACQYFVEMIE  253 (307)
Q Consensus       233 ~~~~~~g~~~~a~~~~~~~~~  253 (307)
                      ..|...|++++|..++++.++
T Consensus       390 ~~~~~qg~~~eA~~~~~~Al~  410 (433)
T 3qww_A          390 RLYMGLENKAAGEKALKKAIA  410 (433)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHhccCHHHHHHHHHHHHH
Confidence            888888888888888887754

>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}

Probab=97.18  E-value=0.0016  Score=41.11  Aligned_cols=25  Identities=12%  Similarity=0.077  Sum_probs=9.6

Q ss_pred             HHHHHHHHHhcCChHHHHHHHHHHH
Q 021791          122 YTSVVKCLCSCGRIEDAEELLGEMV  146 (307)
Q Consensus       122 ~~~ll~~~~~~~~~~~a~~~~~~~~  146 (307)
                      +..+..+|...|++++|...|++..
T Consensus        38 ~~~lg~~~~~~~~~~~A~~~~~~al   62 (99)
T 2kc7_A           38 YYLMGNAYRKLGDWQKALNNYQSAI   62 (99)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            3333333333333333333333333

>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*

Probab=97.17  E-value=0.0023  Score=52.67  Aligned_cols=93  Identities=3%  Similarity=-0.064  Sum_probs=71.1

Q ss_pred             HHHHhcCCChhHHHHHHHHHhhcC--CCCc----cHHHHHHHHHHHHhcCcHHHHHHHHHHHhh-----CC-CCCC-HHh
Q 021791          161 FKEYRGRKDANGAMKLYRQMKEDD--LCVP----NIHTYNILIGMFMALNRMDMVREIWNHVKG-----SE-LGLD-LDS  227 (307)
Q Consensus       161 ~~~~~~~~~~~~a~~~~~~~~~~~--~~~~----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-----~~-~~~~-~~~  227 (307)
                      +..+.+.|++++|..++++.....  ...|    ...+++.|..+|...|++++|+.++++...     .| ..|+ ..+
T Consensus       294 ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~  373 (429)
T 3qwp_A          294 IEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQ  373 (429)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHH
T ss_pred             HHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHH
Confidence            455667899999999999887542  1122    356788999999999999999999987664     12 1222 346


Q ss_pred             HHHHHHHHHccCcHHHHHHHHHHHHH
Q 021791          228 YTMLIHGLCEKQKWKEACQYFVEMIE  253 (307)
Q Consensus       228 ~~~li~~~~~~g~~~~a~~~~~~~~~  253 (307)
                      ++.|...|...|++++|..++++.++
T Consensus       374 l~nLa~~~~~~g~~~eA~~~~~~Al~  399 (429)
T 3qwp_A          374 VMKVGKLQLHQGMFPQAMKNLRLAFD  399 (429)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence            88899999999999999999998865

>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1

Probab=97.12  E-value=0.026  Score=37.54  Aligned_cols=64  Identities=9%  Similarity=-0.065  Sum_probs=30.0

Q ss_pred             hHHHHHHHHHccCcHHHHHHHHHHHHHcCCCCcHhhHHHHHHHHhhchhHHHHHHHHHHhhhcCC
Q 021791          227 SYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDEESI  291 (307)
Q Consensus       227 ~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~  291 (307)
                      .++..+..+..+|+-++..+++..+.. +.+|++.....+..+|.+.|+..++.+++.+..+.|+
T Consensus        93 ~vd~ALd~lv~~~KkDqLdki~~~~l~-n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG~  156 (172)
T 1wy6_A           93 HVNKALDILVIQGKRDKLEEIGREILK-NNEVSASILVAIANALRRVGDERDATTLLIEACKKGE  156 (172)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHHhccHhHHHHHHHHHhc-cCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhhh
Confidence            344444444455555555555544322 2344444444455555555555555555555444443

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=97.09  E-value=0.023  Score=50.90  Aligned_cols=130  Identities=8%  Similarity=0.083  Sum_probs=74.6

Q ss_pred             HHHHHHHHhcCCchhHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHhcC
Q 021791           88 SIVLHVYSRAHKPQLSLDKLNFMKEKGICPTVATYTSVVKCLCSCGRIEDAEELLGEMVRNGVSPSAETYNCFFKEYRGR  167 (307)
Q Consensus        88 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  167 (307)
                      ..++..+.+.|.++.|.++.+.-       .     .-.......|+++.|.++.+.+      .+...|..+...+.+.
T Consensus       633 ~~~~~~l~~~~~~~~a~~~~~~~-------~-----~~f~~~l~~~~~~~A~~~~~~~------~~~~~W~~la~~al~~  694 (814)
T 3mkq_A          633 TKIARFLEGQEYYEEALNISPDQ-------D-----QKFELALKVGQLTLARDLLTDE------SAEMKWRALGDASLQR  694 (814)
T ss_dssp             HHHHHHHHHTTCHHHHHHHCCCH-------H-----HHHHHHHHHTCHHHHHHHHTTC------CCHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHhCCChHHheecCCCc-------c-----hheehhhhcCCHHHHHHHHHhh------CcHhHHHHHHHHHHHc
Confidence            55555666666666665544211       0     1122345567777776664332      2566777777777777


Q ss_pred             CChhHHHHHHHHHhhcCCCCccHHHHHHHHHHHHhcCcHHHHHHHHHHHhhCCCCCCHHhHHHHHHHHHccCcHHHHHHH
Q 021791          168 KDANGAMKLYRQMKEDDLCVPNIHTYNILIGMFMALNRMDMVREIWNHVKGSELGLDLDSYTMLIHGLCEKQKWKEACQY  247 (307)
Q Consensus       168 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~  247 (307)
                      ++++.|.+.|..+..          |..+...+...|+.+...++.+.....|      -++....+|.+.|++++|+++
T Consensus       695 ~~~~~A~~~y~~~~d----------~~~l~~l~~~~~~~~~~~~~~~~a~~~~------~~~~A~~~~~~~g~~~~a~~~  758 (814)
T 3mkq_A          695 FNFKLAIEAFTNAHD----------LESLFLLHSSFNNKEGLVTLAKDAETTG------KFNLAFNAYWIAGDIQGAKDL  758 (814)
T ss_dssp             TCHHHHHHHHHHHTC----------HHHHHHHHHHTTCHHHHHHHHHHHHHTT------CHHHHHHHHHHHTCHHHHHHH
T ss_pred             CCHHHHHHHHHHccC----------hhhhHHHHHHcCCHHHHHHHHHHHHHcC------chHHHHHHHHHcCCHHHHHHH
Confidence            777777777776643          2234444445666666666555555443      224444456667777777777


Q ss_pred             HHHH
Q 021791          248 FVEM  251 (307)
Q Consensus       248 ~~~~  251 (307)
                      +.++
T Consensus       759 ~~~~  762 (814)
T 3mkq_A          759 LIKS  762 (814)
T ss_dssp             HHHT
T ss_pred             HHHc
Confidence            7654

>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*

Probab=97.09  E-value=0.002  Score=52.97  Aligned_cols=88  Identities=10%  Similarity=-0.011  Sum_probs=68.1

Q ss_pred             hcCChHHHHHHHHHHHhC---CCCCC----HhhHHHHHHHHhcCCChhHHHHHHHHHhhc-----CCCCc-cHHHHHHHH
Q 021791          131 SCGRIEDAEELLGEMVRN---GVSPS----AETYNCFFKEYRGRKDANGAMKLYRQMKED-----DLCVP-NIHTYNILI  197 (307)
Q Consensus       131 ~~~~~~~a~~~~~~~~~~---~~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~~~~~-~~~~~~~l~  197 (307)
                      ..|++++|+.++++..+.   -+.|+    ..+++.+..+|...|++++|..++++....     |...| ...+++.|.
T Consensus       310 ~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa  389 (433)
T 3qww_A          310 HYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLG  389 (433)
T ss_dssp             TTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHH
T ss_pred             hccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHH
Confidence            457889999999987653   11222    467899999999999999999999887642     21123 356789999


Q ss_pred             HHHHhcCcHHHHHHHHHHHhh
Q 021791          198 GMFMALNRMDMVREIWNHVKG  218 (307)
Q Consensus       198 ~~~~~~~~~~~a~~~~~~~~~  218 (307)
                      ..|...|++++|+.++++..+
T Consensus       390 ~~~~~qg~~~eA~~~~~~Al~  410 (433)
T 3qww_A          390 RLYMGLENKAAGEKALKKAIA  410 (433)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHhccCHHHHHHHHHHHHH
Confidence            999999999999999988764

>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}

Probab=97.08  E-value=0.011  Score=36.92  Aligned_cols=67  Identities=10%  Similarity=0.115  Sum_probs=40.4

Q ss_pred             CccHHHHHHHHHHHHhcCc---HHHHHHHHHHHhhCCCCCCHHhHHHHHHHHHccCcHHHHHHHHHHHHHc
Q 021791          187 VPNIHTYNILIGMFMALNR---MDMVREIWNHVKGSELGLDLDSYTMLIHGLCEKQKWKEACQYFVEMIEK  254 (307)
Q Consensus       187 ~~~~~~~~~l~~~~~~~~~---~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~  254 (307)
                      +.|...+..+..++...++   .++|..++++....... +......+...+...|++++|+..|+++++.
T Consensus         3 p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~-~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~   72 (93)
T 3bee_A            3 AVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPY-NEAALSLIANDHFISFRFQEAIDTWVLLLDS   72 (93)
T ss_dssp             CCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTC
T ss_pred             CCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence            4455556666665544433   56666666666665422 5555666666666677777777777776654

>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*

Probab=97.03  E-value=0.003  Score=52.04  Aligned_cols=93  Identities=6%  Similarity=-0.059  Sum_probs=69.1

Q ss_pred             HHHHHHhcCchhhHHHHHHHHHhcC---CCC----cHHHHHHHHHHHHhhCCCCcchhhHHHHHHHHHHHHHHHhc----
Q 021791           10 LIYGWCKINRIDMAERFLGEMIERG---VEP----NVVTYNVLLNGVCRRASLHPNERFEKTIRNAEKVFDEMRVR----   78 (307)
Q Consensus        10 li~~~~~~g~~~~a~~~~~~~~~~~---~~p----~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~----   78 (307)
                      .+..+.+.|++++|++++++..+..   +.|    ...+++.+..+|..          .|++++|+.++++..+.    
T Consensus       293 ~ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~----------~g~~~eA~~~~~~~L~i~~~~  362 (429)
T 3qwp_A          293 KIEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACIN----------LGLLEEALFYGTRTMEPYRIF  362 (429)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHH----------HTCHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHh----------hccHHHHHHHHHHHHHhHHHH
Confidence            4566778899999999999987641   222    34678889999998          77778888777776542    


Q ss_pred             -C-CCC-CHHHHHHHHHHHHhcCCchhHHHHHHHHHH
Q 021791           79 -G-IEP-DVTSFSIVLHVYSRAHKPQLSLDKLNFMKE  112 (307)
Q Consensus        79 -~-~~~-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~  112 (307)
                       | ..| ...+++.|...|...|++++|..++++..+
T Consensus       363 lg~~Hp~~a~~l~nLa~~~~~~g~~~eA~~~~~~Al~  399 (429)
T 3qwp_A          363 FPGSHPVRGVQVMKVGKLQLHQGMFPQAMKNLRLAFD  399 (429)
T ss_dssp             SCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             cCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence             2 222 345688899999999999999998887754

>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}

Probab=96.99  E-value=0.011  Score=36.94  Aligned_cols=66  Identities=11%  Similarity=-0.046  Sum_probs=39.1

Q ss_pred             CCHHHHHHHHHHHHhcCC---chhHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 021791           82 PDVTSFSIVLHVYSRAHK---PQLSLDKLNFMKEKGICPTVATYTSVVKCLCSCGRIEDAEELLGEMVRN  148 (307)
Q Consensus        82 ~~~~~~~~ll~~~~~~~~---~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~  148 (307)
                      .|...+..+..++...++   .++|..++++..+.... +......+...+.+.|++++|...|+++.+.
T Consensus         4 ~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~-~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~   72 (93)
T 3bee_A            4 VTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPY-NEAALSLIANDHFISFRFQEAIDTWVLLLDS   72 (93)
T ss_dssp             CCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTC
T ss_pred             CCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence            455555555555544333   46666666666665433 5555666666666666666666666666654

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=96.99  E-value=0.016  Score=51.91  Aligned_cols=45  Identities=11%  Similarity=-0.028  Sum_probs=22.2

Q ss_pred             HhcCCchhHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCChHHHHHHHHHH
Q 021791           95 SRAHKPQLSLDKLNFMKEKGICPTVATYTSVVKCLCSCGRIEDAEELLGEM  145 (307)
Q Consensus        95 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~  145 (307)
                      ...|+++.|.++.+.+      .+...|..+...+.+.++++.|++.|.++
T Consensus       663 l~~~~~~~A~~~~~~~------~~~~~W~~la~~al~~~~~~~A~~~y~~~  707 (814)
T 3mkq_A          663 LKVGQLTLARDLLTDE------SAEMKWRALGDASLQRFNFKLAIEAFTNA  707 (814)
T ss_dssp             HHHTCHHHHHHHHTTC------CCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             hhcCCHHHHHHHHHhh------CcHhHHHHHHHHHHHcCCHHHHHHHHHHc
Confidence            3445555555443221      14445555555555555555555555544

>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*

Probab=96.89  E-value=0.022  Score=43.62  Aligned_cols=97  Identities=10%  Similarity=0.108  Sum_probs=73.1

Q ss_pred             HHHHHHHHHHHHHHHhcCCCCC---HHHHHHHHHHHHhc-----CCchhHHHHHHHHHHcCCCCchhhHHHHHHHHHhc-
Q 021791           62 EKTIRNAEKVFDEMRVRGIEPD---VTSFSIVLHVYSRA-----HKPQLSLDKLNFMKEKGICPTVATYTSVVKCLCSC-  132 (307)
Q Consensus        62 ~~~~~~a~~~~~~~~~~~~~~~---~~~~~~ll~~~~~~-----~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~-  132 (307)
                      .+....|...+++..+.  .|+   -..|..+...|...     |+.++|.+.|++..+.+..-+..++......++.. 
T Consensus       176 l~~l~~A~a~lerAleL--DP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~  253 (301)
T 3u64_A          176 PDTVHAAVMMLERACDL--WPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPL  253 (301)
T ss_dssp             HHHHHHHHHHHHHHHHH--CTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTT
T ss_pred             HHhHHHHHHHHHHHHHh--CCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhc
Confidence            67778888888888876  444   45788888888884     88999999999888875433467777788888774 


Q ss_pred             CChHHHHHHHHHHHhCCCC--CCHhhHHHH
Q 021791          133 GRIEDAEELLGEMVRNGVS--PSAETYNCF  160 (307)
Q Consensus       133 ~~~~~a~~~~~~~~~~~~~--~~~~~~~~l  160 (307)
                      |+.+++.+.+++.......  |+....+..
T Consensus       254 gd~~~a~~~L~kAL~a~p~~~P~~~lan~~  283 (301)
T 3u64_A          254 NNRAGFDEALDRALAIDPESVPHNKLLVIL  283 (301)
T ss_dssp             TCHHHHHHHHHHHHHCCGGGCSSCHHHHHH
T ss_pred             CCHHHHHHHHHHHHcCCCCCCCChhHHHHH
Confidence            8889999999988887666  555444444

>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1

Probab=96.85  E-value=0.018  Score=39.48  Aligned_cols=87  Identities=13%  Similarity=0.063  Sum_probs=61.6

Q ss_pred             ChhHHHHHHHHHhhcCCCCccHHHHHHHHHHHHhcC---cHHHHHHHHHHHhhCCCCC--CHHhHHHHHHHHHccCcHHH
Q 021791          169 DANGAMKLYRQMKEDDLCVPNIHTYNILIGMFMALN---RMDMVREIWNHVKGSELGL--DLDSYTMLIHGLCEKQKWKE  243 (307)
Q Consensus       169 ~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~---~~~~a~~~~~~~~~~~~~~--~~~~~~~li~~~~~~g~~~~  243 (307)
                      ....+.+-|.+....+  +++..+...+..++++.+   +.++++.+++...+.. .|  +...+-.+.-+|.+.|++++
T Consensus        13 ~l~~~~~~y~~e~~~~--~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~-~p~~~rd~lY~LAv~~~kl~~Y~~   89 (152)
T 1pc2_A           13 DLLKFEKKFQSEKAAG--SVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYEK   89 (152)
T ss_dssp             HHHHHHHHHHHHHHTT--CCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHTSCHHH
T ss_pred             HHHHHHHHHHHHHccC--CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CccchHHHHHHHHHHHHHccCHHH
Confidence            3455666666666655  567777777888888877   6668888888887764 23  34455556667788888999


Q ss_pred             HHHHHHHHHHcCCCCcH
Q 021791          244 ACQYFVEMIEKGLLPQK  260 (307)
Q Consensus       244 a~~~~~~~~~~~~~p~~  260 (307)
                      |.+.++.+++.  .|+.
T Consensus        90 A~~y~~~lL~i--eP~n  104 (152)
T 1pc2_A           90 ALKYVRGLLQT--EPQN  104 (152)
T ss_dssp             HHHHHHHHHHH--CTTC
T ss_pred             HHHHHHHHHhc--CCCC
Confidence            99988888865  5643

>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A

Probab=96.77  E-value=0.025  Score=36.08  Aligned_cols=66  Identities=8%  Similarity=-0.079  Sum_probs=40.0

Q ss_pred             CHHHHHHHHHHHHhcCCchhHHHHHHHHHHcC------CCCchhhHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 021791           83 DVTSFSIVLHVYSRAHKPQLSLDKLNFMKEKG------ICPTVATYTSVVKCLCSCGRIEDAEELLGEMVRN  148 (307)
Q Consensus        83 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~------~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~  148 (307)
                      +...+..+...+.+.|++..|...|+...+.-      ..+....+..+..++.+.|+++.|...+++..+.
T Consensus         4 sa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l   75 (104)
T 2v5f_A            4 TAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLEL   75 (104)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhc
Confidence            44555566666777777777777766655431      1224455666666666666666666666666654

>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1

Probab=96.76  E-value=0.058  Score=35.90  Aligned_cols=137  Identities=7%  Similarity=-0.015  Sum_probs=76.7

Q ss_pred             HHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCchhHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCChHHHHHH
Q 021791           62 EKTIRNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHKPQLSLDKLNFMKEKGICPTVATYTSVVKCLCSCGRIEDAEEL  141 (307)
Q Consensus        62 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~  141 (307)
                      .|.+++..++..+.....   +..-+|-++--....-+=+-..++++.+-+.   .|.          ..+|++......
T Consensus        20 dG~v~qGveii~k~~~ss---ni~E~NW~ICNiiD~a~C~y~v~vLd~IGki---FDi----------s~C~NlKrVi~C   83 (172)
T 1wy6_A           20 DGYIDEGVKIVLEITKSS---TKSEYNWFICNLLESIDCRYMFQVLDKIGSY---FDL----------DKCQNLKSVVEC   83 (172)
T ss_dssp             TTCHHHHHHHHHHHHHHS---CHHHHTHHHHHHHHHCCHHHHHHHHHHHGGG---SCG----------GGCSCTHHHHHH
T ss_pred             hhhHHHHHHHHHHHcCCC---CccccceeeeecchhhchhHHHHHHHHHhhh---cCc----------HhhhcHHHHHHH
Confidence            345556666666655442   4444554444444444434344444333221   221          233444444444


Q ss_pred             HHHHHhCCCCCCHhhHHHHHHHHhcCCChhHHHHHHHHHhhcCCCCccHHHHHHHHHHHHhcCcHHHHHHHHHHHhhCCC
Q 021791          142 LGEMVRNGVSPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDDLCVPNIHTYNILIGMFMALNRMDMVREIWNHVKGSEL  221 (307)
Q Consensus       142 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~  221 (307)
                      +-.+-     .+...+...+......|..++..+++..+....  +|++.....+..+|.+.|+..++.+++.+..+.|+
T Consensus        84 ~~~~n-----~~se~vd~ALd~lv~~~KkDqLdki~~~~l~n~--~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG~  156 (172)
T 1wy6_A           84 GVINN-----TLNEHVNKALDILVIQGKRDKLEEIGREILKNN--EVSASILVAIANALRRVGDERDATTLLIEACKKGE  156 (172)
T ss_dssp             HHHTT-----CCCHHHHHHHHHHHHTTCHHHHHHHHHHHC--C--CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC
T ss_pred             HHHhc-----chHHHHHHHHHHHHHhccHhHHHHHHHHHhccC--CCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhhh
Confidence            43321     244555666677777777777777777754433  66777777777788888888888777777777764

>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A

Probab=96.50  E-value=0.04  Score=35.12  Aligned_cols=66  Identities=12%  Similarity=0.052  Sum_probs=39.3

Q ss_pred             chhhHHHHHHHHHhcCChHHHHHHHHHHHhCC------CCCCHhhHHHHHHHHhcCCChhHHHHHHHHHhhc
Q 021791          118 TVATYTSVVKCLCSCGRIEDAEELLGEMVRNG------VSPSAETYNCFFKEYRGRKDANGAMKLYRQMKED  183 (307)
Q Consensus       118 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~------~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~  183 (307)
                      +..-+..+...+...|+++.|...|+...+..      -.+....+..+..++.+.|+++.|...+++..+.
T Consensus         4 sa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l   75 (104)
T 2v5f_A            4 TAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLEL   75 (104)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhc
Confidence            44445566677777777777777776665431      1123445556666666666666666666666554

>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*

Probab=96.48  E-value=0.034  Score=42.59  Aligned_cols=109  Identities=14%  Similarity=0.111  Sum_probs=77.3

Q ss_pred             hHHHHHHHHHhhcCCCCccHHHHHHHHHHHHh-----cCcHHHHHHHHHHHhhCCCCCCHHhHHHHHHHHHcc-CcHHHH
Q 021791          171 NGAMKLYRQMKEDDLCVPNIHTYNILIGMFMA-----LNRMDMVREIWNHVKGSELGLDLDSYTMLIHGLCEK-QKWKEA  244 (307)
Q Consensus       171 ~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-----~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~-g~~~~a  244 (307)
                      ..|...+++..+.+.-..+-..|..+...|.+     .|+.++|.+.|++....+..-+..++....+.++.. |+.+++
T Consensus       180 ~~A~a~lerAleLDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~~a  259 (301)
T 3u64_A          180 HAAVMMLERACDLWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNRAGF  259 (301)
T ss_dssp             HHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHHHH
T ss_pred             HHHHHHHHHHHHhCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCHHHH
Confidence            56777777777764211246688889988988     499999999999999875432477888888888884 999999


Q ss_pred             HHHHHHHHHcCCC--CcHhhHHHHHHHHhhchhHHHHHHHHHHhh
Q 021791          245 CQYFVEMIEKGLL--PQKVTFETLYRGLIQSDMLRTWRRLKKKLD  287 (307)
Q Consensus       245 ~~~~~~~~~~~~~--p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~  287 (307)
                      ...+++.++....  |+..        +...+.-++|..++.++.
T Consensus       260 ~~~L~kAL~a~p~~~P~~~--------lan~~~q~eA~~LL~~~~  296 (301)
T 3u64_A          260 DEALDRALAIDPESVPHNK--------LLVILSQKRARWLKAHVQ  296 (301)
T ss_dssp             HHHHHHHHHCCGGGCSSCH--------HHHHHHHHHHHHHHHTHH
T ss_pred             HHHHHHHHcCCCCCCCChh--------HHHHHHHHHHHHHHHHhH
Confidence            9999999987554  4422        233344456666665543

>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}

Probab=96.47  E-value=0.13  Score=36.24  Aligned_cols=131  Identities=13%  Similarity=0.148  Sum_probs=96.4

Q ss_pred             HHHHHhcCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHhcCCChhHHHHHHHHHhhcCCCCccHHHHHHHHHHHHhcCc
Q 021791          126 VKCLCSCGRIEDAEELLGEMVRNGVSPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDDLCVPNIHTYNILIGMFMALNR  205 (307)
Q Consensus       126 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~  205 (307)
                      .......|+++.|.++.+.+      .+...|..+.......|+++-|.+.|......          ..+.-.|...|+
T Consensus        12 F~LAL~lg~l~~A~e~a~~l------~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D~----------~~L~~Ly~~tg~   75 (177)
T 3mkq_B           12 FDLALEYGNLDAALDEAKKL------NDSITWERLIQEALAQGNASLAEMIYQTQHSF----------DKLSFLYLVTGD   75 (177)
T ss_dssp             HHHHHHTTCHHHHHHHHHHH------CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTCH----------HHHHHHHHHHTC
T ss_pred             HHHHHhcCCHHHHHHHHHHh------CCHHHHHHHHHHHHHcCChHHHHHHHHHhCCH----------HHHHHHHHHhCC
Confidence            34566789999999998765      47899999999999999999999999987643          345555667888


Q ss_pred             HHHHHHHHHHHhhCCCCCCHHhHHHHHHHHHccCcHHHHHHHHHHHHHcCCCCcHhhHHHHHHHHhhchhHHHHHHHHHH
Q 021791          206 MDMVREIWNHVKGSELGLDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKK  285 (307)
Q Consensus       206 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~  285 (307)
                      .+...++-+.....|      -++.....+...|+++++.++|.+.   |-.|.+..      .....|-.+.|.++.+.
T Consensus        76 ~e~L~kla~iA~~~g------~~n~af~~~l~lGdv~~~i~lL~~~---~r~~eA~~------~A~t~g~~~~a~~~~~~  140 (177)
T 3mkq_B           76 VNKLSKMQNIAQTRE------DFGSMLLNTFYNNSTKERSSIFAEG---GSLPLAYA------VAKANGDEAAASAFLEQ  140 (177)
T ss_dssp             HHHHHHHHHHHHHTT------CHHHHHHHHHHHTCHHHHHHHHHHT---TCHHHHHH------HHHHTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHCc------cHHHHHHHHHHcCCHHHHHHHHHHC---CChHHHHH------HHHHcCcHHHHHHHHHH
Confidence            888887777666654      3455666677889999999998654   33332221      12335667888888887


Q ss_pred             hh
Q 021791          286 LD  287 (307)
Q Consensus       286 ~~  287 (307)
                      +.
T Consensus       141 ~~  142 (177)
T 3mkq_B          141 AE  142 (177)
T ss_dssp             TT
T ss_pred             hC
Confidence            64

>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1

Probab=96.46  E-value=0.03  Score=38.35  Aligned_cols=83  Identities=12%  Similarity=0.050  Sum_probs=33.3

Q ss_pred             HHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcC---CchhHHHHHHHHHHcCCCC--chhhHHHHHHHHHhcCChHH
Q 021791           63 KTIRNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAH---KPQLSLDKLNFMKEKGICP--TVATYTSVVKCLCSCGRIED  137 (307)
Q Consensus        63 ~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~---~~~~a~~~~~~~~~~~~~~--~~~~~~~ll~~~~~~~~~~~  137 (307)
                      ..+..+.+-|.+..+.|. ++..+...+..++++.+   +.++++.+++...+.+ .|  ....+-.+.-+|.+.|++++
T Consensus        12 ~~l~~~~~~y~~e~~~~~-~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~-~p~~~rd~lY~LAv~~~kl~~Y~~   89 (152)
T 1pc2_A           12 EDLLKFEKKFQSEKAAGS-VSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYEK   89 (152)
T ss_dssp             HHHHHHHHHHHHHHHTTC-CCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHTSCHHH
T ss_pred             HHHHHHHHHHHHHHccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CccchHHHHHHHHHHHHHccCHHH
Confidence            334444444444433332 34444444444444444   2334444444444432 11  12222333333444444444


Q ss_pred             HHHHHHHHHh
Q 021791          138 AEELLGEMVR  147 (307)
Q Consensus       138 a~~~~~~~~~  147 (307)
                      |.+.++.+.+
T Consensus        90 A~~y~~~lL~   99 (152)
T 1pc2_A           90 ALKYVRGLLQ   99 (152)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHh
Confidence            4444444444

>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A

Probab=96.30  E-value=0.14  Score=34.83  Aligned_cols=53  Identities=2%  Similarity=0.015  Sum_probs=29.1

Q ss_pred             CChhHHHHHHHHHhhcCCCCccHHHHHHHHHHHHhcCcHHHHHHHHHHHhhCCCC
Q 021791          168 KDANGAMKLYRQMKEDDLCVPNIHTYNILIGMFMALNRMDMVREIWNHVKGSELG  222 (307)
Q Consensus       168 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~  222 (307)
                      ++.++|.++|+.+....  +-=...|....+.-.+.|++..|.+++......+.+
T Consensus        74 ~D~d~aR~vy~~a~~~h--KkFAKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k  126 (161)
T 4h7y_A           74 QEPDDARDYFQMARANC--KKFAFVHISFAQFELSQGNVKKSKQLLQKAVERGAV  126 (161)
T ss_dssp             HCGGGCHHHHHHHHHHC--TTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCB
T ss_pred             cCHHHHHHHHHHHHHHh--HHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCC
Confidence            45556666665554432  222555555555555666666666666666655443

>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A

Probab=96.25  E-value=0.15  Score=34.70  Aligned_cols=115  Identities=12%  Similarity=0.081  Sum_probs=81.2

Q ss_pred             CCCHHHHHHHHHHHHhcCCc------hhHHHHHHHHHHcCCCCchh-hHHHHHHH------HHhcCChHHHHHHHHHHHh
Q 021791           81 EPDVTSFSIVLHVYSRAHKP------QLSLDKLNFMKEKGICPTVA-TYTSVVKC------LCSCGRIEDAEELLGEMVR  147 (307)
Q Consensus        81 ~~~~~~~~~ll~~~~~~~~~------~~a~~~~~~~~~~~~~~~~~-~~~~ll~~------~~~~~~~~~a~~~~~~~~~  147 (307)
                      +-|..+|-..+...-+.|++      ++..++|++.... ++|+.. .|...+..      +...+++++|.++|+.+..
T Consensus        10 p~~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~-~Pp~k~~~wrrYI~LWIrYA~~~ei~D~d~aR~vy~~a~~   88 (161)
T 4h7y_A           10 ANNPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEA-LPPDKYGQNESFARIQVRFAELKAIQEPDDARDYFQMARA   88 (161)
T ss_dssp             CCSHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHH-SCGGGGTTCHHHHHHHHHHHHHHHHHCGGGCHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHc-CCccccccHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence            34677888888888888888      7888888887765 445421 12222211      2345899999999999987


Q ss_pred             CCCCCCHhhHHHHHHHHhcCCChhHHHHHHHHHhhcCCCCccHHHHHHHHHH
Q 021791          148 NGVSPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDDLCVPNIHTYNILIGM  199 (307)
Q Consensus       148 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~  199 (307)
                      .+-. -...|....+.-.+.|+...|.+++......+  +-+...+...++-
T Consensus        89 ~hKk-FAKiwi~~AqFEiRqgnl~kARkILg~AiG~~--~k~~~~le~a~~n  137 (161)
T 4h7y_A           89 NCKK-FAFVHISFAQFELSQGNVKKSKQLLQKAVERG--AVPLEMLEIALRN  137 (161)
T ss_dssp             HCTT-BHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT--CBCHHHHHHHHHH
T ss_pred             HhHH-HHHHHHHHHHHHHHcccHHHHHHHHHHHhccC--CCcHHHHHHHHHh
Confidence            6333 37788888888899999999999999999876  3444555554444

>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}

Probab=96.15  E-value=0.2  Score=35.25  Aligned_cols=130  Identities=10%  Similarity=0.036  Sum_probs=92.1

Q ss_pred             HHHHHhcCCchhHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHhcCCCh
Q 021791           91 LHVYSRAHKPQLSLDKLNFMKEKGICPTVATYTSVVKCLCSCGRIEDAEELLGEMVRNGVSPSAETYNCFFKEYRGRKDA  170 (307)
Q Consensus        91 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~  170 (307)
                      .......|+++.|.++.+.+      .+...|..|.......|+++-|++.|.+..+         +..+.-.|...|+.
T Consensus        12 F~LAL~lg~l~~A~e~a~~l------~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D---------~~~L~~Ly~~tg~~   76 (177)
T 3mkq_B           12 FDLALEYGNLDAALDEAKKL------NDSITWERLIQEALAQGNASLAEMIYQTQHS---------FDKLSFLYLVTGDV   76 (177)
T ss_dssp             HHHHHHTTCHHHHHHHHHHH------CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC---------HHHHHHHHHHHTCH
T ss_pred             HHHHHhcCCHHHHHHHHHHh------CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC---------HHHHHHHHHHhCCH
Confidence            34456889999999987765      3788999999999999999999999988753         34455566778888


Q ss_pred             hHHHHHHHHHhhcCCCCccHHHHHHHHHHHHhcCcHHHHHHHHHHHhhCCCCCCHHhHHHHHHHHHccCcHHHHHHHHHH
Q 021791          171 NGAMKLYRQMKEDDLCVPNIHTYNILIGMFMALNRMDMVREIWNHVKGSELGLDLDSYTMLIHGLCEKQKWKEACQYFVE  250 (307)
Q Consensus       171 ~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~  250 (307)
                      ++...+-+.....+.       ++.....+.-.|+++++.+++.+....         ..-.......|-.+.|.++.++
T Consensus        77 e~L~kla~iA~~~g~-------~n~af~~~l~lGdv~~~i~lL~~~~r~---------~eA~~~A~t~g~~~~a~~~~~~  140 (177)
T 3mkq_B           77 NKLSKMQNIAQTRED-------FGSMLLNTFYNNSTKERSSIFAEGGSL---------PLAYAVAKANGDEAAASAFLEQ  140 (177)
T ss_dssp             HHHHHHHHHHHHTTC-------HHHHHHHHHHHTCHHHHHHHHHHTTCH---------HHHHHHHHHTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHCcc-------HHHHHHHHHHcCCHHHHHHHHHHCCCh---------HHHHHHHHHcCcHHHHHHHHHH
Confidence            887777666665542       344455566799999999998654431         1111112235667777777765


Q ss_pred             H
Q 021791          251 M  251 (307)
Q Consensus       251 ~  251 (307)
                      +
T Consensus       141 ~  141 (177)
T 3mkq_B          141 A  141 (177)
T ss_dssp             T
T ss_pred             h
Confidence            5

>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A

Probab=95.66  E-value=0.25  Score=32.51  Aligned_cols=64  Identities=8%  Similarity=-0.089  Sum_probs=27.1

Q ss_pred             CHhhHHHHHHHHhcCCChhH---HHHHHHHHhhcCCCCc--cHHHHHHHHHHHHhcCcHHHHHHHHHHHhh
Q 021791          153 SAETYNCFFKEYRGRKDANG---AMKLYRQMKEDDLCVP--NIHTYNILIGMFMALNRMDMVREIWNHVKG  218 (307)
Q Consensus       153 ~~~~~~~l~~~~~~~~~~~~---a~~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~  218 (307)
                      +..+--.+..++.+..+...   ++.+++.+.+.+  .|  .....-.|.-++.+.|++++|.+.++.+.+
T Consensus        34 s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~--~p~~~Rd~lY~LAvg~yklg~Y~~A~~~~~~lL~  102 (126)
T 1nzn_A           34 SKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKG--SKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQ  102 (126)
T ss_dssp             CHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTS--CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC--CcchHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence            34443344444444444433   444444444432  12  222233333444445555555555444444

>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A

Probab=95.61  E-value=0.11  Score=34.15  Aligned_cols=83  Identities=18%  Similarity=0.132  Sum_probs=48.8

Q ss_pred             hhHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCChHH---HHHHHHHHHhCCCC-CCHhhHHHHHHHHhcCCChhHHHHH
Q 021791          101 QLSLDKLNFMKEKGICPTVATYTSVVKCLCSCGRIED---AEELLGEMVRNGVS-PSAETYNCFFKEYRGRKDANGAMKL  176 (307)
Q Consensus       101 ~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~---a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~  176 (307)
                      ..+.+-|......|. ++..+-..+..++.++++...   ++.+++.+...+.+ -.....-.+.-++.+.|++++|.+.
T Consensus        18 ~~~~~~y~~e~~~~~-~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~A~~~   96 (126)
T 1nzn_A           18 LKFEKKFQSEKAAGS-VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKY   96 (126)
T ss_dssp             HHHHHHHHHHHHHSC-CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             HHHHHHHHHHhccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHHHHHH
Confidence            344444544444443 466666666677777666555   66666666654311 1233444455567777777777777


Q ss_pred             HHHHhhcC
Q 021791          177 YRQMKEDD  184 (307)
Q Consensus       177 ~~~~~~~~  184 (307)
                      ++.+.+..
T Consensus        97 ~~~lL~~e  104 (126)
T 1nzn_A           97 VRGLLQTE  104 (126)
T ss_dssp             HHHHHHHC
T ss_pred             HHHHHHhC
Confidence            77777763

>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*

Probab=95.30  E-value=0.35  Score=39.19  Aligned_cols=73  Identities=12%  Similarity=0.018  Sum_probs=54.2

Q ss_pred             HHHHHHHHHHhcCcHHHHHHHHHHHhhCCCCCCHHhHHHHHHHHHccCcHHHHHHHHHHHHH-----cCCCCcHhhHHH
Q 021791          192 TYNILIGMFMALNRMDMVREIWNHVKGSELGLDLDSYTMLIHGLCEKQKWKEACQYFVEMIE-----KGLLPQKVTFET  265 (307)
Q Consensus       192 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~-----~~~~p~~~~~~~  265 (307)
                      +...++.++...|+.+++...+..+.... +.+...|..++.++.+.|+..+|++.|+++.+     .|+.|+..+-..
T Consensus       173 a~~~~~~~~l~~g~~~~a~~~l~~~~~~~-P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l~~l  250 (388)
T 2ff4_A          173 AHTAKAEAEIACGRASAVIAELEALTFEH-PYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTLRAL  250 (388)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHHHHH
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHHHHH
Confidence            34556677778888888888877776653 44777888888888888888888888887654     288888776443

>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}

Probab=95.15  E-value=0.17  Score=44.62  Aligned_cols=130  Identities=13%  Similarity=0.076  Sum_probs=83.9

Q ss_pred             HHHHHHHHHHhcCC-chhHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCC-hHHHHHHHHHHHhC------CCCC-CH--
Q 021791           86 SFSIVLHVYSRAHK-PQLSLDKLNFMKEKGICPTVATYTSVVKCLCSCGR-IEDAEELLGEMVRN------GVSP-SA--  154 (307)
Q Consensus        86 ~~~~ll~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~-~~~a~~~~~~~~~~------~~~~-~~--  154 (307)
                      ....++..+...++ .+.|..+++++.......+......++..+...++ --+|.+++.+..+.      ...+ +.  
T Consensus       250 L~~~Ll~~~~~t~~~~~~a~~~le~L~~~~p~~~~~~~~~~i~~~~~~~~~Ev~av~ll~~~l~~~~~~~~~l~~~~~~~  329 (754)
T 4gns_B          250 LMYSLKSFIAITPSLVDFTIDYLKGLTKKDPIHDIYYKTAMITILDHIETKELDMITILNETLDPLLSLLNDLPPRDADS  329 (754)
T ss_dssp             HHHHHHHHHHTCGGGHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHHHHHHHTCSSCCHHH
T ss_pred             HHHHHHHHHcccccHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhccccccc
Confidence            34556666666766 47899999999887432222222333443333332 23455555544321      1111 11  


Q ss_pred             --------hhHHHHHHHHhcCCChhHHHHHHHHHhhcCCCCccHHHHHHHHHHHHhcCcHHHHHHHHHHHh
Q 021791          155 --------ETYNCFFKEYRGRKDANGAMKLYRQMKEDDLCVPNIHTYNILIGMFMALNRMDMVREIWNHVK  217 (307)
Q Consensus       155 --------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~  217 (307)
                              .....-.+.+...|+++-|+.+-++.....  +.+-.+|..|..+|...|+++.|+-.++.+.
T Consensus       330 ~~~~~~~~~LL~~Qa~FLl~K~~~elAL~~Ak~AV~~a--PseF~tW~~La~vYi~l~d~e~ALLtLNScP  398 (754)
T 4gns_B          330 ARLMNCMSDLLNIQTNFLLNRGDYELALGVSNTSTELA--LDSFESWYNLARCHIKKEEYEKALFAINSMP  398 (754)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--SSCHHHHHHHHHHHHHTTCHHHHHHHHHHSC
T ss_pred             ccccCcchHHHHHHHHHHhccCcHHHHHHHHHHHHhcC--chhhHHHHHHHHHHHHhccHHHHHHHHhcCC
Confidence                    122222445678999999999999998875  6678899999999999999999999998874

>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}

Probab=95.07  E-value=0.25  Score=43.53  Aligned_cols=127  Identities=14%  Similarity=0.137  Sum_probs=79.7

Q ss_pred             HHHHHHHHhcCc-hhhHHHHHHHHHhcCCCCcHHHH--HHHHHHHHhhCCCCcchhhHHHHHHHHHHHHHHHhc------
Q 021791            8 TSLIYGWCKINR-IDMAERFLGEMIERGVEPNVVTY--NVLLNGVCRRASLHPNERFEKTIRNAEKVFDEMRVR------   78 (307)
Q Consensus         8 ~~li~~~~~~g~-~~~a~~~~~~~~~~~~~p~~~~~--~~ll~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~------   78 (307)
                      ..++..+...|+ .+.|.++|+++.+.  .|....+  ..++......         ...--+|.+++.+..+.      
T Consensus       252 ~~Ll~~~~~t~~~~~~a~~~le~L~~~--~p~~~~~~~~~~i~~~~~~---------~~~Ev~av~ll~~~l~~~~~~~~  320 (754)
T 4gns_B          252 YSLKSFIAITPSLVDFTIDYLKGLTKK--DPIHDIYYKTAMITILDHI---------ETKELDMITILNETLDPLLSLLN  320 (754)
T ss_dssp             HHHHHHHHTCGGGHHHHHHHHHHHHHH--CGGGHHHHHHHHHHHHTTC---------GGGHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHcccccHHHHHHHHHHHHHhh--CCchhHHHHHHHHHHHHHh---------hhhhHHHHHHHHHHHHHhhhhhh
Confidence            345555656666 58899999999887  4433332  2233322221         11122344444443321      


Q ss_pred             CCC-CCH----------HHHHHHHHHHHhcCCchhHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCChHHHHHHHHHHH
Q 021791           79 GIE-PDV----------TSFSIVLHVYSRAHKPQLSLDKLNFMKEKGICPTVATYTSVVKCLCSCGRIEDAEELLGEMV  146 (307)
Q Consensus        79 ~~~-~~~----------~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~  146 (307)
                      ..+ .+.          ...+.=...+...|+++.|+++-++..... +.+-.+|..|..+|...|+++.|+-.++.+.
T Consensus       321 ~l~~~~~~~~~~~~~~~~LL~~Qa~FLl~K~~~elAL~~Ak~AV~~a-PseF~tW~~La~vYi~l~d~e~ALLtLNScP  398 (754)
T 4gns_B          321 DLPPRDADSARLMNCMSDLLNIQTNFLLNRGDYELALGVSNTSTELA-LDSFESWYNLARCHIKKEEYEKALFAINSMP  398 (754)
T ss_dssp             TCSSCCHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHSC
T ss_pred             hhcccccccccccCcchHHHHHHHHHHhccCcHHHHHHHHHHHHhcC-chhhHHHHHHHHHHHHhccHHHHHHHHhcCC
Confidence            111 111          122222345677999999999999988874 3367899999999999999999999998874

>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N

Probab=94.60  E-value=2.5  Score=38.31  Aligned_cols=121  Identities=8%  Similarity=0.066  Sum_probs=60.9

Q ss_pred             HHHHhcCChHHHHHHHHHHHhCCCCCCHhhHH--HHHHHHhcCCChhHHHHHHHHHhhcCCCCccHHHHH--HHHHHHHh
Q 021791          127 KCLCSCGRIEDAEELLGEMVRNGVSPSAETYN--CFFKEYRGRKDANGAMKLYRQMKEDDLCVPNIHTYN--ILIGMFMA  202 (307)
Q Consensus       127 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~--~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~--~l~~~~~~  202 (307)
                      ..+...|+.+....++..+.+..   +.....  .+.-++...|+.+.+..+++.+....  .|....-.  ++.-+|+.
T Consensus       498 li~vGTgn~~ai~~LL~~~~e~~---~e~vrR~aalgLGll~~g~~e~~~~li~~L~~~~--dp~vRygaa~alglAyaG  572 (963)
T 4ady_A          498 LCMLGTGKPEAIHDMFTYSQETQ---HGNITRGLAVGLALINYGRQELADDLITKMLASD--ESLLRYGGAFTIALAYAG  572 (963)
T ss_dssp             HHHTTCCCHHHHHHHHHHHHHCS---CHHHHHHHHHHHHHHTTTCGGGGHHHHHHHHHCS--CHHHHHHHHHHHHHHTTT
T ss_pred             hhhcccCCHHHHHHHHHHHhccC---cHHHHHHHHHHHHhhhCCChHHHHHHHHHHHhCC--CHHHHHHHHHHHHHHhcC
Confidence            33445667776677776665431   222222  22233446677777777777776543  23332222  33345556


Q ss_pred             cCcHHHHHHHHHHHhhCCCCCCHHhHHHHHHHHHccCcHHHHHHHHHHHHH
Q 021791          203 LNRMDMVREIWNHVKGSELGLDLDSYTMLIHGLCEKQKWKEACQYFVEMIE  253 (307)
Q Consensus       203 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~  253 (307)
                      .|+.....+++..+.... ..+......+.-++...|+.+.+.+++..+.+
T Consensus       573 TGn~~aIq~LL~~~~~d~-~d~VRraAViaLGlI~~g~~e~v~rlv~~L~~  622 (963)
T 4ady_A          573 TGNNSAVKRLLHVAVSDS-NDDVRRAAVIALGFVLLRDYTTVPRIVQLLSK  622 (963)
T ss_dssp             SCCHHHHHHHHHHHHHCS-CHHHHHHHHHHHHHHTSSSCSSHHHHTTTGGG
T ss_pred             CCCHHHHHHHHHHhccCC-cHHHHHHHHHHHHhhccCCHHHHHHHHHHHHh
Confidence            677666666777666532 11222222222333344554445555554443

>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...

Probab=94.45  E-value=0.5  Score=29.52  Aligned_cols=44  Identities=14%  Similarity=0.292  Sum_probs=19.2

Q ss_pred             HHHHHHHHhCCCCCCHhhHHHHHHHHhcCCChhHHHHHHHHHhh
Q 021791          139 EELLGEMVRNGVSPSAETYNCFFKEYRGRKDANGAMKLYRQMKE  182 (307)
Q Consensus       139 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~  182 (307)
                      .+-++.+....+.|++....+.+++|.+.+++..|.++|+.+..
T Consensus        30 rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~   73 (109)
T 1v54_E           30 RKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKD   73 (109)
T ss_dssp             HHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence            33333333344444444444444444444444444444444443

>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N

Probab=94.36  E-value=2.9  Score=37.94  Aligned_cols=182  Identities=14%  Similarity=0.128  Sum_probs=105.1

Q ss_pred             HHHHHHHHHHHhcCCCCCHHHHH--HHHHHHHhcCCchhHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCChHHHHHHHH
Q 021791           66 RNAEKVFDEMRVRGIEPDVTSFS--IVLHVYSRAHKPQLSLDKLNFMKEKGICPTVATYTSVVKCLCSCGRIEDAEELLG  143 (307)
Q Consensus        66 ~~a~~~~~~~~~~~~~~~~~~~~--~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~  143 (307)
                      +++.+.+..+.... .+......  +|...+...|+.+....++..+.+.. .-+..-...+.-++.-.|+.+.+..+.+
T Consensus       471 eev~e~L~~~L~dd-~~~~~~~AalALGli~vGTgn~~ai~~LL~~~~e~~-~e~vrR~aalgLGll~~g~~e~~~~li~  548 (963)
T 4ady_A          471 IEVYEALKEVLYND-SATSGEAAALGMGLCMLGTGKPEAIHDMFTYSQETQ-HGNITRGLAVGLALINYGRQELADDLIT  548 (963)
T ss_dssp             HHHHHHHHHHHHTC-CHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHCS-CHHHHHHHHHHHHHHTTTCGGGGHHHHH
T ss_pred             HHHHHHHHHHHhcC-CHHHHHHHHHHHhhhhcccCCHHHHHHHHHHHhccC-cHHHHHHHHHHHHhhhCCChHHHHHHHH
Confidence            45556666655432 11111122  23334556677777777777766542 1122222333344457899999999998


Q ss_pred             HHHhCCCCCCHhh--HHHHHHHHhcCCChhHHHHHHHHHhhcCCCCccHHHHHHHHHHHHhcCcHHHHHHHHHHHhhCCC
Q 021791          144 EMVRNGVSPSAET--YNCFFKEYRGRKDANGAMKLYRQMKEDDLCVPNIHTYNILIGMFMALNRMDMVREIWNHVKGSEL  221 (307)
Q Consensus       144 ~~~~~~~~~~~~~--~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~  221 (307)
                      .+.... .|....  -..+.-+|+..|+.....+++..+....  ..+..-...+.-++...|+.+.+.++++.+.+.+ 
T Consensus       549 ~L~~~~-dp~vRygaa~alglAyaGTGn~~aIq~LL~~~~~d~--~d~VRraAViaLGlI~~g~~e~v~rlv~~L~~~~-  624 (963)
T 4ady_A          549 KMLASD-ESLLRYGGAFTIALAYAGTGNNSAVKRLLHVAVSDS--NDDVRRAAVIALGFVLLRDYTTVPRIVQLLSKSH-  624 (963)
T ss_dssp             HHHHCS-CHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHCS--CHHHHHHHHHHHHHHTSSSCSSHHHHTTTGGGCS-
T ss_pred             HHHhCC-CHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHhccCC--cHHHHHHHHHHHHhhccCCHHHHHHHHHHHHhcC-
Confidence            887641 122221  1234456888999888888999988764  3455544444445556777777788887776653 


Q ss_pred             CCCHHhHHHHHHHHHccCcH-HHHHHHHHHHHH
Q 021791          222 GLDLDSYTMLIHGLCEKQKW-KEACQYFVEMIE  253 (307)
Q Consensus       222 ~~~~~~~~~li~~~~~~g~~-~~a~~~~~~~~~  253 (307)
                      .|....-..+.-+....|.. .+++.++..+..
T Consensus       625 d~~VR~gAalALGli~aGn~~~~aid~L~~L~~  657 (963)
T 4ady_A          625 NAHVRCGTAFALGIACAGKGLQSAIDVLDPLTK  657 (963)
T ss_dssp             CHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHT
T ss_pred             CHHHHHHHHHHHHHhccCCCcHHHHHHHHHHcc
Confidence            33443333344444444443 677888888864

>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*

Probab=94.18  E-value=0.32  Score=39.44  Aligned_cols=59  Identities=17%  Similarity=0.228  Sum_probs=36.3

Q ss_pred             HHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHhcCCChhHHHHHHHHHh
Q 021791          122 YTSVVKCLCSCGRIEDAEELLGEMVRNGVSPSAETYNCFFKEYRGRKDANGAMKLYRQMK  181 (307)
Q Consensus       122 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~  181 (307)
                      ...++..+...|++++|...+..+....+ .+...+..+|.++.+.|+..+|++.|+.+.
T Consensus       174 ~~~~~~~~l~~g~~~~a~~~l~~~~~~~P-~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r  232 (388)
T 2ff4_A          174 HTAKAEAEIACGRASAVIAELEALTFEHP-YREPLWTQLITAYYLSDRQSDALGAYRRVK  232 (388)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHTTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            34455566666666666666666655432 355666666666666676666666666553

>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}

Probab=93.25  E-value=1.2  Score=29.61  Aligned_cols=46  Identities=13%  Similarity=0.274  Sum_probs=25.4

Q ss_pred             HHHHHHHHHhCCCCCCHhhHHHHHHHHhcCCChhHHHHHHHHHhhc
Q 021791          138 AEELLGEMVRNGVSPSAETYNCFFKEYRGRKDANGAMKLYRQMKED  183 (307)
Q Consensus       138 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~  183 (307)
                      ..+-++.+...++.|++......+++|.+.+++..|.++|+-+..+
T Consensus        72 lrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K  117 (152)
T 2y69_E           72 LRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK  117 (152)
T ss_dssp             HHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHh
Confidence            3344444444555555555555555555556665565555555544

>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}

Probab=92.58  E-value=3.3  Score=38.90  Aligned_cols=147  Identities=7%  Similarity=-0.036  Sum_probs=98.7

Q ss_pred             HHHHHHHhcCCchhHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCC-----------------
Q 021791           89 IVLHVYSRAHKPQLSLDKLNFMKEKGICPTVATYTSVVKCLCSCGRIEDAEELLGEMVRNGVS-----------------  151 (307)
Q Consensus        89 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~-----------------  151 (307)
                      .++..+...+..+.+.++.....     .+...--.+..+|...|++++|.+.|++... |+.                 
T Consensus       817 ~l~~~l~~~~~~~~~~~l~~~~~-----~~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~-~~~~~~~l~~~~~~~~~~~~  890 (1139)
T 4fhn_B          817 ELVEKLFLFKQYNACMQLIGWLN-----SDPIAVYLKALIYLKSKEAVKAVRCFKTTSL-VLYSHTSQFAVLREFQEIAE  890 (1139)
T ss_dssp             HHHHHHHHHSCTTHHHHHHHHSC-----CCHHHHHHHHHHHHHTTCHHHHHHHHHTCCC-SCTTCCCSCSSHHHHHHHHH
T ss_pred             HHHHHHHHhhhHHHHHHHhhhcc-----CCcHHHHHHHHHHHhcCCHHHHHHHHHHHhh-hhcccchhhhhhcccccccc
Confidence            34555666666666655443322     2444445677889999999999999987532 110                 


Q ss_pred             ------CCHhhHHHHHHHHhcCCChhHHHHHHHHHhhcCCC-Ccc--HHHHHHHHHHHHhcCcHHHHHHHHHHHhhCCCC
Q 021791          152 ------PSAETYNCFFKEYRGRKDANGAMKLYRQMKEDDLC-VPN--IHTYNILIGMFMALNRMDMVREIWNHVKGSELG  222 (307)
Q Consensus       152 ------~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~  222 (307)
                            .-..-|..++..+.+.+.++.+.++-......... .++  ...|..+..++...|++++|...+-.+..... 
T Consensus       891 ~~~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~~~-  969 (1139)
T 4fhn_B          891 KYHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLSTTPL-  969 (1139)
T ss_dssp             TTTSCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHHSSS-
T ss_pred             cccccccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCHHH-
Confidence                  11234677888889999999998888776654320 122  22678899999999999999999988776533 


Q ss_pred             CCHHhHHHHHHHHHccCcHHH
Q 021791          223 LDLDSYTMLIHGLCEKQKWKE  243 (307)
Q Consensus       223 ~~~~~~~~li~~~~~~g~~~~  243 (307)
                       -......++...+..|..+.
T Consensus       970 -r~~cLr~LV~~lce~~~~~~  989 (1139)
T 4fhn_B          970 -KKSCLLDFVNQLTKQGKINQ  989 (1139)
T ss_dssp             -CHHHHHHHHHHHHHHCCHHH
T ss_pred             -HHHHHHHHHHHHHhCCChhh
Confidence             45667777777776655443

>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=92.34  E-value=4.1  Score=33.63  Aligned_cols=191  Identities=8%  Similarity=0.082  Sum_probs=118.5

Q ss_pred             HHHHHHHHHHHHHHHhc-----CCCCCHHHHHHHHHHHHhcCCchhHHHHHHHHHHcCCCCchhhHHHHHHHH----Hhc
Q 021791           62 EKTIRNAEKVFDEMRVR-----GIEPDVTSFSIVLHVYSRAHKPQLSLDKLNFMKEKGICPTVATYTSVVKCL----CSC  132 (307)
Q Consensus        62 ~~~~~~a~~~~~~~~~~-----~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~----~~~  132 (307)
                      .+++++|++.+..+.+.     ...........++..|...++++...+.+..+....... ......+++.+    ...
T Consensus        29 ~~~~~~a~e~ll~lEK~~r~~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lskkr~ql-k~ai~~~V~~~~~~l~~~  107 (445)
T 4b4t_P           29 QNDCNSALDQLLVLEKKTRQASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLSKKHGQL-KLSIQYMIQKVMEYLKSS  107 (445)
T ss_dssp             HHHHHHHHHHHHHHHHHHSSSCSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTTTS-HHHHHHHHHHHHHHHHHH
T ss_pred             cCCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhhh-HHHHHHHHHHHHHHHhcC
Confidence            46677777777665432     244467778889999999999999988887775543221 22233344333    223


Q ss_pred             CChHHH--HHHHHHHHh--CC-CCC---CHhhHHHHHHHHhcCCChhHHHHHHHHHhhcCCCCcc----HHHHHHHHHHH
Q 021791          133 GRIEDA--EELLGEMVR--NG-VSP---SAETYNCFFKEYRGRKDANGAMKLYRQMKEDDLCVPN----IHTYNILIGMF  200 (307)
Q Consensus       133 ~~~~~a--~~~~~~~~~--~~-~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~~l~~~~  200 (307)
                      ...+..  ..+.+.+..  .| +-.   .......|...+...|++.+|.+++..+...-.-..+    ...+...++.|
T Consensus       108 ~~~d~~~~~~~i~~l~~vte~kiflE~erarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~  187 (445)
T 4b4t_P          108 KSLDLNTRISVIETIRVVTENKIFVEVERARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELS  187 (445)
T ss_dssp             CTTHHHHHHHHHHCCSSSSSCCCCCCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHH
T ss_pred             CchhHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHH
Confidence            333221  122211111  01 111   1233456788899999999999999998653210111    34667778899


Q ss_pred             HhcCcHHHHHHHHHHHhh----CCCCCCH--HhHHHHHHHHHccCcHHHHHHHHHHHHH
Q 021791          201 MALNRMDMVREIWNHVKG----SELGLDL--DSYTMLIHGLCEKQKWKEACQYFVEMIE  253 (307)
Q Consensus       201 ~~~~~~~~a~~~~~~~~~----~~~~~~~--~~~~~li~~~~~~g~~~~a~~~~~~~~~  253 (307)
                      ...+++..|..++..+..    ....|+.  ..+...+..+...++|.+|...|.+..+
T Consensus       188 l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~~~  246 (445)
T 4b4t_P          188 ILKGDYSQATVLSRKILKKTFKNPKYESLKLEYYNLLVKISLHKREYLEVAQYLQEIYQ  246 (445)
T ss_dssp             HHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred             HHCCCHHHHHHHHHHHHHhhcccCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence            999999999999988753    2222222  3456677777888888888888777754

>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A

Probab=92.12  E-value=1.7  Score=28.79  Aligned_cols=52  Identities=6%  Similarity=-0.017  Sum_probs=25.0

Q ss_pred             HHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCchhHHHHHHHHHHc
Q 021791           62 EKTIRNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHKPQLSLDKLNFMKEK  113 (307)
Q Consensus        62 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~  113 (307)
                      ..+..+++.+++++.+.+..-....+-.|.-++.+.|+++.|.+..+.+.+.
T Consensus        56 ~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~  107 (134)
T 3o48_A           56 VNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEH  107 (134)
T ss_dssp             HHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhh
Confidence            4445555555555554431112333334444555555555555555555544

>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A

Probab=91.79  E-value=1.9  Score=28.59  Aligned_cols=72  Identities=10%  Similarity=0.035  Sum_probs=40.3

Q ss_pred             CccHHHHHHHHHHHHhcCc---HHHHHHHHHHHhhCCCCCCHHhHHHHHHHHHccCcHHHHHHHHHHHHHcCCCCcH
Q 021791          187 VPNIHTYNILIGMFMALNR---MDMVREIWNHVKGSELGLDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQK  260 (307)
Q Consensus       187 ~~~~~~~~~l~~~~~~~~~---~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~  260 (307)
                      .|+..+--.+..++.+..+   ..+++.+++.+...+..-....+-.+.-++.+.|++++|.+..+.+++.  .|+.
T Consensus        37 ~vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~--eP~N  111 (134)
T 3o48_A           37 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEH--ERNN  111 (134)
T ss_dssp             GSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTT--CTTC
T ss_pred             CCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhh--CCCC
Confidence            4555555555555555543   3356666666665431112334445556667777777777777777643  4543

>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...

Probab=91.68  E-value=1.6  Score=27.37  Aligned_cols=63  Identities=13%  Similarity=0.103  Sum_probs=38.1

Q ss_pred             cHHHHHHHHHHHhhCCCCCCHHhHHHHHHHHHccCcHHHHHHHHHHHHHcCCCCcHhhHHHHHH
Q 021791          205 RMDMVREIWNHVKGSELGLDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYR  268 (307)
Q Consensus       205 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~  268 (307)
                      +.-+..+-++.+....+.|++......+++|.+-+++..|.++|+-.+.+ ..+...+|..+++
T Consensus        25 D~~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K-~~~~~~iY~~~lq   87 (109)
T 1v54_E           25 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK-AGPHKEIYPYVIQ   87 (109)
T ss_dssp             CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-TTTCTTHHHHHHH
T ss_pred             cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH-hcCchhhHHHHHH
Confidence            34455666666666666677777777777777777777777777666554 2223334555543

>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}

Probab=91.02  E-value=4.7  Score=31.67  Aligned_cols=132  Identities=14%  Similarity=0.120  Sum_probs=74.3

Q ss_pred             HHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCch-hHHHHH----HHHHHcC--CCCchhhHHHHHHHHHhcCChHHH
Q 021791           66 RNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHKPQ-LSLDKL----NFMKEKG--ICPTVATYTSVVKCLCSCGRIEDA  138 (307)
Q Consensus        66 ~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~-~a~~~~----~~~~~~~--~~~~~~~~~~ll~~~~~~~~~~~a  138 (307)
                      |-+.-+++-+.+.++++|......++..+.....-+ .-.+++    .+-.+.|  ..-|+.....+...|.+.+++.+|
T Consensus        76 DL~~llvevy~~~~~~~~~~~~~rL~~L~~~~~~~~p~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~ig~~~~~e~~~~~A  155 (336)
T 3lpz_A           76 DLAVLLVDTFRQAGQRVDGASRGKLLGCLRLFQPGEPVRKRFVKEMIDWSKKFGDYPAGDPELHHVVGTLYVEEGEFEAA  155 (336)
T ss_dssp             HHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHHHHHHSSCTTCCHHHHHHHHHHHHHTTCHHHH
T ss_pred             HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCHHHH
Confidence            334445566666777888877777777776655322 112222    2223333  344677788888999999999888


Q ss_pred             HHHHHHHHhCCCCCCHhhHHHHHHHHhcCCChhHHHHHHHHHhhcCCCCccHHHHHHHHHHHHhcCcHHHHHHHHHHHh
Q 021791          139 EELLGEMVRNGVSPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDDLCVPNIHTYNILIGMFMALNRMDMVREIWNHVK  217 (307)
Q Consensus       139 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~  217 (307)
                      +..|-    .|-.++...+..++..+...+...               .++...-.+++. |...++...|..+++...
T Consensus       156 e~H~i----lg~~~s~~~~a~mL~ew~~~~~~~---------------e~dlfiaRaVL~-yL~l~n~~~A~~~~~~f~  214 (336)
T 3lpz_A          156 EKHLV----LGTKESPEVLARMEYEWYKQDESH---------------TAPLYCARAVLP-YLLVANVRAANTAYRIFT  214 (336)
T ss_dssp             HHHHT----TSCTTHHHHHHHHHHHHHHTSCGG---------------GHHHHHHHHHHH-HHHTTCHHHHHHHHHHHH
T ss_pred             HHHHH----hcCCchHHHHHHHHHHHHHhcCCc---------------cHHHHHHHHHHH-HHHhCCHHHHHHHHHHHH
Confidence            87772    233334456655555544443322               223333333333 334666777766655544

>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=90.93  E-value=5.4  Score=32.72  Aligned_cols=100  Identities=9%  Similarity=-0.035  Sum_probs=72.3

Q ss_pred             HHHHHHHHHHHhcCCchhHHHHHHHHHHc--CCCCchhhHHHHHHHHHhcCChHHHHHHHHHHHhC---CCCCCHhh--H
Q 021791           85 TSFSIVLHVYSRAHKPQLSLDKLNFMKEK--GICPTVATYTSVVKCLCSCGRIEDAEELLGEMVRN---GVSPSAET--Y  157 (307)
Q Consensus        85 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~~--~  157 (307)
                      .+...+...|.+.|+.+.|.+.|.++...  +...-...+..++..+...+++..+...+.++...   +..|+...  .
T Consensus       132 ~~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~~~lk  211 (429)
T 4b4t_R          132 QAWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERRNRYK  211 (429)
T ss_dssp             SCCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHHHHHH
Confidence            36778999999999999999999999875  33334567888899999999999999999887643   32222221  1


Q ss_pred             HHHHHHHhcCCChhHHHHHHHHHhhcC
Q 021791          158 NCFFKEYRGRKDANGAMKLYRQMKEDD  184 (307)
Q Consensus       158 ~~l~~~~~~~~~~~~a~~~~~~~~~~~  184 (307)
                      ..-...+...+++..|...|-+.....
T Consensus       212 ~~~gl~~l~~r~f~~Aa~~f~e~~~t~  238 (429)
T 4b4t_R          212 TYYGIHCLAVRNFKEAAKLLVDSLATF  238 (429)
T ss_dssp             HHHHHGGGGTSCHHHHHHHHHHHHHHS
T ss_pred             HHHHHHHHHhChHHHHHHHHHHHhccC
Confidence            112223456789999988888776543

>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}

Probab=90.53  E-value=7.4  Score=36.61  Aligned_cols=146  Identities=13%  Similarity=0.013  Sum_probs=94.1

Q ss_pred             HHHHHHHhcCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHhcCCChhHHHHHHHHHhhcCC------------------
Q 021791          124 SVVKCLCSCGRIEDAEELLGEMVRNGVSPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDDL------------------  185 (307)
Q Consensus       124 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~------------------  185 (307)
                      .++..+...+..+.+.++.....     -+...--.+..+|...|++++|...|.+.-..-.                  
T Consensus       817 ~l~~~l~~~~~~~~~~~l~~~~~-----~~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~~~~~~~~l~~~~~~~~~~~~~  891 (1139)
T 4fhn_B          817 ELVEKLFLFKQYNACMQLIGWLN-----SDPIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEK  891 (1139)
T ss_dssp             HHHHHHHHHSCTTHHHHHHHHSC-----CCHHHHHHHHHHHHHTTCHHHHHHHHHTCCCSCTTCCCSCSSHHHHHHHHHT
T ss_pred             HHHHHHHHhhhHHHHHHHhhhcc-----CCcHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccchhhhhhccccccccc
Confidence            34455666666666655443322     2444444566778999999999999977521100                  


Q ss_pred             ---CCccHHHHHHHHHHHHhcCcHHHHHHHHHHHhhCCCCCCH----HhHHHHHHHHHccCcHHHHHHHHHHHHHcCCCC
Q 021791          186 ---CVPNIHTYNILIGMFMALNRMDMVREIWNHVKGSELGLDL----DSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLP  258 (307)
Q Consensus       186 ---~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p  258 (307)
                         ...-..-|..++..+-+.+.++.+.++-....+....-+.    ..|..+...+...|++++|...+..+-+...+ 
T Consensus       892 ~~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~~~r-  970 (1139)
T 4fhn_B          892 YHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLSTTPLK-  970 (1139)
T ss_dssp             TTSCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHHSSSC-
T ss_pred             ccccccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCHHHH-
Confidence               0011233667788888889999888887766553221121    25788899999999999999999887765433 


Q ss_pred             cHhhHHHHHHHHhhchhH
Q 021791          259 QKVTFETLYRGLIQSDML  276 (307)
Q Consensus       259 ~~~~~~~l~~~~~~~g~~  276 (307)
                       ...+..++..+++.|..
T Consensus       971 -~~cLr~LV~~lce~~~~  987 (1139)
T 4fhn_B          971 -KSCLLDFVNQLTKQGKI  987 (1139)
T ss_dssp             -HHHHHHHHHHHHHHCCH
T ss_pred             -HHHHHHHHHHHHhCCCh
Confidence             34566777666655543

>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A

Probab=90.38  E-value=0.026  Score=46.57  Aligned_cols=218  Identities=10%  Similarity=0.056  Sum_probs=123.4

Q ss_pred             cHHHHHHHHHHHHhcCchhhHHHHHHHHHhcCCCCcHHHHHHHHHHHHhhCCCCcchhhHHHHHHHHHHHHHHHhcCCCC
Q 021791            3 NVKMYTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPNERFEKTIRNAEKVFDEMRVRGIEP   82 (307)
Q Consensus         3 ~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~   82 (307)
                      |+..|..+|.+..+.|.+++-+..+.-..+..-  ++..=+.|+-+|++.+++..-+.+              .   -.|
T Consensus        82 Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~~k--e~~IDteLi~ayAk~~rL~elEef--------------l---~~~  142 (624)
T 3lvg_A           82 DPSSYMEVVQAANTSGNWEELVKYLQMARKKAR--ESYVETELIFALAKTNRLAELEEF--------------I---NGP  142 (624)
T ss_dssp             CCCSSSHHHHHTTTSSCCTTHHHHHHTTSTTCC--STTTTHHHHHHHHTSCSSSTTTST--------------T---SCC
T ss_pred             ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhc--ccccHHHHHHHHHhhCcHHHHHHH--------------H---cCC
Confidence            444555666666666666666666654444322  223334566666665443322111              1   123


Q ss_pred             CHHHHHHHHHHHHhcCCchhHHHHHHHHHHcC--------------------CCCchhhHHHHHHHHHhcCChHHHHHHH
Q 021791           83 DVTSFSIVLHVYSRAHKPQLSLDKLNFMKEKG--------------------ICPTVATYTSVVKCLCSCGRIEDAEELL  142 (307)
Q Consensus        83 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~--------------------~~~~~~~~~~ll~~~~~~~~~~~a~~~~  142 (307)
                      |..-...+..-|...|.++.|.-+|..+..-.                    -..++.||-.+-.+|...+.+.-|-..-
T Consensus       143 N~A~iq~VGDrcf~e~lYeAAKilys~isN~akLAstLV~L~~yq~AVdaArKAns~ktWKeV~~ACvd~~EfrLAqicG  222 (624)
T 3lvg_A          143 NNAHIQQVGDRCYDEKMYDAAKLLYNNVSNFGRLASTLVHLGEYQAAVDGARKANSTRTWKEVCFACVDGKEFRLAQMCG  222 (624)
T ss_dssp             SSSCTHHHHHHHHHSCCSTTSSTTGGGSCCCTTTSSSSSSCSGGGSSTTTTTTCCSSCSHHHHTHHHHHSCTTTTTTHHH
T ss_pred             CcccHHHHHHHHHHccCHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHhCchHHHHHHHhc
Confidence            44444445555555555555544443332110                    1236677888888888888777765554


Q ss_pred             HHHHhCCCCCCHhhHHHHHHHHhcCCChhHHHHHHHHHhhcCCCCccHHHHHHHHHHHHhcCcHHHHHHHHHHHhhC-CC
Q 021791          143 GEMVRNGVSPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDDLCVPNIHTYNILIGMFMALNRMDMVREIWNHVKGS-EL  221 (307)
Q Consensus       143 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~  221 (307)
                      -.+.-     ...-...++..|...|.+++.+.+++......  ......|+-|.-.|++-. .++..+-++..-.+ ++
T Consensus       223 LniIv-----hadeL~elv~~YE~~G~f~ELIsLlEaglglE--rAHmGmFTELaILYsKY~-PeKlmEHlklf~sriNi  294 (624)
T 3lvg_A          223 LHIVV-----HADELEELINYYQDRGYFEELITMLEAALGLE--RAHMGMFTELAILYSKFK-PQKMREHLELFWSRVNI  294 (624)
T ss_dssp             HHHHC-----CSSCCSGGGSSSSTTCCCTTSTTTHHHHTTST--TCCHHHHHHHHHHHHSSC-TTHHHHHHTTSSSSSCC
T ss_pred             chhcc-----cHHHHHHHHHHHHhCCCHHHHHHHHHHHhCCC--chhHHHHHHHHHHHHhcC-HHHHHHHHHHHHHhccH
Confidence            44432     22223346667888899999999998887554  678889999998888763 44443333332221 22


Q ss_pred             CC------CHHhHHHHHHHHHccCcHHHHHHH
Q 021791          222 GL------DLDSYTMLIHGLCEKQKWKEACQY  247 (307)
Q Consensus       222 ~~------~~~~~~~li~~~~~~g~~~~a~~~  247 (307)
                      +.      ....|..++-.|.+-.+++.|...
T Consensus       295 pKviracE~ahLW~ElvfLY~~ydE~DnA~lt  326 (624)
T 3lvg_A          295 PKVLRAAEQAHLWAELVFLYDKYEEYDNAIIT  326 (624)
T ss_dssp             TTTHHHHTTTTCHHHHHHHHHHHTCHHHHHHT
T ss_pred             HHHHHHHHHHhhHHHHHHHHhcchhHHHHHHH
Confidence            11      334577778778877777766543

>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}

Probab=90.13  E-value=2.9  Score=27.78  Aligned_cols=62  Identities=13%  Similarity=0.106  Sum_probs=40.6

Q ss_pred             HHHHHHHHHHHhhCCCCCCHHhHHHHHHHHHccCcHHHHHHHHHHHHHcCCCCcHhhHHHHHH
Q 021791          206 MDMVREIWNHVKGSELGLDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYR  268 (307)
Q Consensus       206 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~  268 (307)
                      .-+..+-++.+....+.|++......+++|.+-+++..|..+|+-.+.+ ..+....|..+++
T Consensus        69 ~wElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K-~~~~~~iY~y~lq  130 (152)
T 2y69_E           69 AWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK-AGPHKEIYPYVIQ  130 (152)
T ss_dssp             HHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-TTTCTTHHHHHHH
T ss_pred             HHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHh-cCCchhhHHHHHH
Confidence            3455566666666677777777777777777777777777777766655 2333445665553

>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A

Probab=89.96  E-value=6.7  Score=31.72  Aligned_cols=166  Identities=12%  Similarity=0.060  Sum_probs=96.3

Q ss_pred             HHHHHHHHHHhcCCchhHHHHHHHHHHc-CCCC---chhhHHHHHHHHHhcC-ChHHHHHHHHHHHhCCCCCCHhhH---
Q 021791           86 SFSIVLHVYSRAHKPQLSLDKLNFMKEK-GICP---TVATYTSVVKCLCSCG-RIEDAEELLGEMVRNGVSPSAETY---  157 (307)
Q Consensus        86 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~-~~~~---~~~~~~~ll~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~---  157 (307)
                      ....|...|.+.|+.++..+++...... +.-|   .......++..+.... ..+.-.++..+..+..-. ...+|   
T Consensus        21 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~kak~~k~v~~l~~~~~~~~~~~~~~~~~~~~~~~~a~~-~~r~flr~   99 (394)
T 3txn_A           21 GILQQGELYKQEGKAKELADLIKVTRPFLSSISKAKAAKLVRSLVDMFLDMDAGTGIEVQLCKDCIEWAKQ-EKRTFLRQ   99 (394)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHHHTTTGGGGSCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHH-TTCHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHH-HHHHHHHH
Confidence            4556778888888888888877765432 1111   2334556677666543 333334444443332110 11233   


Q ss_pred             ---HHHHHHHhcCCChhHHHHHHHHHhhcCCC----CccHHHHHHHHHHHHhcCcHHHHHHHHHHHhhC--CCCCCHHhH
Q 021791          158 ---NCFFKEYRGRKDANGAMKLYRQMKEDDLC----VPNIHTYNILIGMFMALNRMDMVREIWNHVKGS--ELGLDLDSY  228 (307)
Q Consensus       158 ---~~l~~~~~~~~~~~~a~~~~~~~~~~~~~----~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~  228 (307)
                         ..++..|...|++.+|..++..+.+.-.-    .--..++..-++.|...+++.++...+......  .+.+++...
T Consensus       100 ~l~~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~i~  179 (394)
T 3txn_A          100 SLEARLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPKVQ  179 (394)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHH
T ss_pred             HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCHHHH
Confidence               25778888999999998888887664210    112344566677788889998888888776542  122333332


Q ss_pred             HHH----HHHHH-ccCcHHHHHHHHHHHH
Q 021791          229 TML----IHGLC-EKQKWKEACQYFVEMI  252 (307)
Q Consensus       229 ~~l----i~~~~-~~g~~~~a~~~~~~~~  252 (307)
                      ..+    ...+. ..++|+.|...|-+..
T Consensus       180 a~i~~~~Gi~~l~~~rdyk~A~~~F~eaf  208 (394)
T 3txn_A          180 GALDLQSGILHAADERDFKTAFSYFYEAF  208 (394)
T ss_dssp             HHHHHHHHHHHHHTTSCHHHHHHHHHHHH
T ss_pred             HHHHHHhhHHHHHhccCHHHHHHHHHHHH
Confidence            221    12234 6778888877776653

>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}

Probab=89.29  E-value=2.6  Score=29.19  Aligned_cols=63  Identities=3%  Similarity=-0.118  Sum_probs=41.0

Q ss_pred             hhHHHHHHHHhcCCChhHHHHHHHHHhhcCCCCccH-------HHHHHHHHHHHhcCcHHHHHHHHHHHh
Q 021791          155 ETYNCFFKEYRGRKDANGAMKLYRQMKEDDLCVPNI-------HTYNILIGMFMALNRMDMVREIWNHVK  217 (307)
Q Consensus       155 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-------~~~~~l~~~~~~~~~~~~a~~~~~~~~  217 (307)
                      .++-.-++.+...+.++.|.-+.+.+.......|+.       .++..+.+++...+++..|...|++..
T Consensus        21 ~~l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qAL   90 (167)
T 3ffl_A           21 MNVIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMAL   90 (167)
T ss_dssp             CCHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHH
Confidence            344455666777888888877777755432113331       355667777778888888888887754

>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=88.56  E-value=9.4  Score=31.51  Aligned_cols=188  Identities=10%  Similarity=0.088  Sum_probs=114.2

Q ss_pred             CCchhHHHHHHHHHHc-----CCCCchhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHH----hcCC
Q 021791           98 HKPQLSLDKLNFMKEK-----GICPTVATYTSVVKCLCSCGRIEDAEELLGEMVRNGVSPSAETYNCFFKEY----RGRK  168 (307)
Q Consensus        98 ~~~~~a~~~~~~~~~~-----~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~----~~~~  168 (307)
                      |+++.|++.+..+.+.     +...+......++..|...|+++...+.+..+....-. .......+++.+    ....
T Consensus        30 ~~~~~a~e~ll~lEK~~r~~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lskkr~q-lk~ai~~~V~~~~~~l~~~~  108 (445)
T 4b4t_P           30 NDCNSALDQLLVLEKKTRQASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLSKKHGQ-LKLSIQYMIQKVMEYLKSSK  108 (445)
T ss_dssp             HHHHHHHHHHHHHHHHHSSSCSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTTT-SHHHHHHHHHHHHHHHHHHC
T ss_pred             CCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhh-hHHHHHHHHHHHHHHHhcCC
Confidence            5667777776665532     23445666788999999999999998887766643211 222233344332    2223


Q ss_pred             ChhH--HHHHHHHHhh--cCCCCc---cHHHHHHHHHHHHhcCcHHHHHHHHHHHhhC--CCCCC---HHhHHHHHHHHH
Q 021791          169 DANG--AMKLYRQMKE--DDLCVP---NIHTYNILIGMFMALNRMDMVREIWNHVKGS--ELGLD---LDSYTMLIHGLC  236 (307)
Q Consensus       169 ~~~~--a~~~~~~~~~--~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~~~---~~~~~~li~~~~  236 (307)
                      ..+.  -..+...+..  .+....   .......|...+...|++.+|.+++..+...  +....   ...+...++.|.
T Consensus       109 ~~d~~~~~~~i~~l~~vte~kiflE~erarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l  188 (445)
T 4b4t_P          109 SLDLNTRISVIETIRVVTENKIFVEVERARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSI  188 (445)
T ss_dssp             TTHHHHHHHHHHCCSSSSSCCCCCCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHH
T ss_pred             chhHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHH
Confidence            2222  2222222211  111011   2344567888999999999999999987642  22111   235677788999


Q ss_pred             ccCcHHHHHHHHHHHHHc----CCCCcH--hhHHHHHHHHhhchhHHHHHHHHHHh
Q 021791          237 EKQKWKEACQYFVEMIEK----GLLPQK--VTFETLYRGLIQSDMLRTWRRLKKKL  286 (307)
Q Consensus       237 ~~g~~~~a~~~~~~~~~~----~~~p~~--~~~~~l~~~~~~~g~~~~a~~~~~~~  286 (307)
                      ..+++.+|..++.+....    ...|+.  ..+...+..+...+++.+|-+.|.++
T Consensus       189 ~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~  244 (445)
T 4b4t_P          189 LKGDYSQATVLSRKILKKTFKNPKYESLKLEYYNLLVKISLHKREYLEVAQYLQEI  244 (445)
T ss_dssp             HHTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHH
T ss_pred             HCCCHHHHHHHHHHHHHhhcccCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence            999999999999987532    222222  23555666677777887777766655

>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}

Probab=88.12  E-value=5  Score=27.82  Aligned_cols=24  Identities=13%  Similarity=0.044  Sum_probs=12.7

Q ss_pred             HHHHHHHHhcCCChhHHHHHHHHH
Q 021791          157 YNCFFKEYRGRKDANGAMKLYRQM  180 (307)
Q Consensus       157 ~~~l~~~~~~~~~~~~a~~~~~~~  180 (307)
                      +..+.+++...+++..|...|++.
T Consensus        66 l~~ladalf~~~eyrrA~~~y~qA   89 (167)
T 3ffl_A           66 LVYHADSLFHDKEYRNAVSKYTMA   89 (167)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHcccHHHHHHHHHHHH
Confidence            344445555555555555555554

>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1

Probab=87.52  E-value=4.9  Score=27.05  Aligned_cols=52  Identities=6%  Similarity=-0.017  Sum_probs=26.6

Q ss_pred             HHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCchhHHHHHHHHHHc
Q 021791           62 EKTIRNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHKPQLSLDKLNFMKEK  113 (307)
Q Consensus        62 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~  113 (307)
                      ..+..+++.+++++...+..-.....-.|.-++.+.|++++|.++.+.+.+.
T Consensus        55 ~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~  106 (144)
T 1y8m_A           55 VNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEH  106 (144)
T ss_dssp             HHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhc
Confidence            4555556666666555432212233334444555566666666665555554

>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=87.48  E-value=8.3  Score=31.62  Aligned_cols=99  Identities=8%  Similarity=-0.024  Sum_probs=69.7

Q ss_pred             hhHHHHHHHHHhcCChHHHHHHHHHHHhCC--CCCCHhhHHHHHHHHhcCCChhHHHHHHHHHhhcCCCCccHHHHHH--
Q 021791          120 ATYTSVVKCLCSCGRIEDAEELLGEMVRNG--VSPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDDLCVPNIHTYNI--  195 (307)
Q Consensus       120 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~--  195 (307)
                      .+...+...|.+.|+++.|.+.+.++....  ..--...+-.+++.+...+++..+...+.+....-...++....+.  
T Consensus       132 ~~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~~~lk  211 (429)
T 4b4t_R          132 QAWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERRNRYK  211 (429)
T ss_dssp             SCCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHHHHHH
Confidence            367789999999999999999999998753  2333567888899999999999999999887543211233222221  


Q ss_pred             --HHHHHHhcCcHHHHHHHHHHHhh
Q 021791          196 --LIGMFMALNRMDMVREIWNHVKG  218 (307)
Q Consensus       196 --l~~~~~~~~~~~~a~~~~~~~~~  218 (307)
                        -...+...+++..|...|-+...
T Consensus       212 ~~~gl~~l~~r~f~~Aa~~f~e~~~  236 (429)
T 4b4t_R          212 TYYGIHCLAVRNFKEAAKLLVDSLA  236 (429)
T ss_dssp             HHHHHGGGGTSCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhChHHHHHHHHHHHhc
Confidence              12223456888888887766554

>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1

Probab=87.21  E-value=5.1  Score=26.95  Aligned_cols=68  Identities=10%  Similarity=0.033  Sum_probs=36.5

Q ss_pred             CCchhhHHHHHHHHHhcCChH---HHHHHHHHHHhCCCCCCHhhHHHHHHHHhcCCChhHHHHHHHHHhhc
Q 021791          116 CPTVATYTSVVKCLCSCGRIE---DAEELLGEMVRNGVSPSAETYNCFFKEYRGRKDANGAMKLYRQMKED  183 (307)
Q Consensus       116 ~~~~~~~~~ll~~~~~~~~~~---~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~  183 (307)
                      .|+..+-..+..++.++.+.+   +++.+++.+...+..-.....-.+.-++.+.|++++|.+..+.+.+.
T Consensus        36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~  106 (144)
T 1y8m_A           36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEH  106 (144)
T ss_dssp             TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHT
T ss_pred             CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhc
Confidence            345555555555566555433   45555655555432223333444455566666666666666666665

>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}

Probab=86.26  E-value=7.5  Score=27.93  Aligned_cols=56  Identities=4%  Similarity=-0.035  Sum_probs=33.5

Q ss_pred             CChhHHHHHHHHHhhcCCCCccHHHHHHHHHHHHhcCcHHHHHHHHHHHhhCCCCC
Q 021791          168 KDANGAMKLYRQMKEDDLCVPNIHTYNILIGMFMALNRMDMVREIWNHVKGSELGL  223 (307)
Q Consensus       168 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~  223 (307)
                      +....+..+|..|...++..--...|..-...+...|++.+|.++++.-.+.+..|
T Consensus        93 ~~~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~~~A~P  148 (202)
T 3esl_A           93 NNFHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLELGAENNCRP  148 (202)
T ss_dssp             TCHHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBS
T ss_pred             cccCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc
Confidence            33456666666666665544455555666666666666666666666666655554

>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1

Probab=86.00  E-value=3.3  Score=31.33  Aligned_cols=115  Identities=10%  Similarity=0.021  Sum_probs=78.6

Q ss_pred             HHHHhcCCChhHHHHHHHHHhhcCCCCccHHHHHHHHHHHHhcCcHHHHHHHHHHHhhCCCCCCHH----hHHHHHHHHH
Q 021791          161 FKEYRGRKDANGAMKLYRQMKEDDLCVPNIHTYNILIGMFMALNRMDMVREIWNHVKGSELGLDLD----SYTMLIHGLC  236 (307)
Q Consensus       161 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~----~~~~li~~~~  236 (307)
                      +....+.|++++++.....-.+..  +.|...-..+++.+|-.|+++.|.+-++...+..  |+..    .|..+|.+  
T Consensus         4 ~~~ll~~g~L~~al~~~~~~VR~~--P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~--p~~~~~a~~yr~lI~a--   77 (273)
T 1zbp_A            4 WKNALSEGQLQQALELLIEAIKAS--PKDASLRSSFIELLCIDGDFERADEQLMQSIKLF--PEYLPGASQLRHLVKA--   77 (273)
T ss_dssp             HHHHTTTTCHHHHHHHHHHHHHTC--TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--GGGHHHHHHHHHHHHH--
T ss_pred             HHHHHhCCCHHHHHHHHHHHHHhC--CcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC--chhhHHHHHHHHHHHH--
Confidence            345678899999999999888886  7888888999999999999999999999888753  3322    33444432  


Q ss_pred             ccCcHHHHHHHHHHHHHcCCCC-----cHhhHHHHHHHHh--hchhHHHHHHHHHHhhhc
Q 021791          237 EKQKWKEACQYFVEMIEKGLLP-----QKVTFETLYRGLI--QSDMLRTWRRLKKKLDEE  289 (307)
Q Consensus       237 ~~g~~~~a~~~~~~~~~~~~~p-----~~~~~~~l~~~~~--~~g~~~~a~~~~~~~~~~  289 (307)
                              ...=.+...-+-.|     ...-...++.+..  ..|+.++|..+.....+.
T Consensus        78 --------E~~R~~vfaG~~~P~~~g~~~~w~~~ll~Al~~~~~G~~~~A~~lr~~A~e~  129 (273)
T 1zbp_A           78 --------AQARKDFAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEEL  129 (273)
T ss_dssp             --------HHHHHHHTTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred             --------HHHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHhc
Confidence                    22222222222222     2234555666654  568999999988887554

>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A

Probab=85.50  E-value=11  Score=29.28  Aligned_cols=130  Identities=8%  Similarity=0.038  Sum_probs=69.8

Q ss_pred             HHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCch-----hHHHHHHHHHHcC--CCCchhhHHHHHHHHHhcCChHHHHH
Q 021791           68 AEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHKPQ-----LSLDKLNFMKEKG--ICPTVATYTSVVKCLCSCGRIEDAEE  140 (307)
Q Consensus        68 a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~-----~a~~~~~~~~~~~--~~~~~~~~~~ll~~~~~~~~~~~a~~  140 (307)
                      +.-+.+-+.+.+.+++......++..+.....-+     -..+.+.+..+.|  ...++..+..+...|.+.|++.+|+.
T Consensus        76 a~llvev~~~~~~~~~~~~~~rl~~l~~~~p~~~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~  155 (312)
T 2wpv_A           76 IFYLLEVYDLAEVKVDDISVARLVRLIAELDPSEPNLKDVITGMNNWSIKFSEYKFGDPYLHNTIGSKLLEGDFVYEAER  155 (312)
T ss_dssp             HHHHHHHHHHTTCCCSHHHHHHHHHHHTTCCTTCTTHHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCCCchHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhcCCHHHHHH
Confidence            4445556666677778777777777766533211     1222233333332  22366777888888888888888777


Q ss_pred             HHHHHHhCCCCCCHhhHHHHHHHHhcC---CChhHHHHHHHHHhhcCCCCccHHHHHHHHHHHHhcCcHHHHHHHHHHHh
Q 021791          141 LLGEMVRNGVSPSAETYNCFFKEYRGR---KDANGAMKLYRQMKEDDLCVPNIHTYNILIGMFMALNRMDMVREIWNHVK  217 (307)
Q Consensus       141 ~~~~~~~~~~~~~~~~~~~l~~~~~~~---~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~  217 (307)
                      .|-.    |-.-+...+..++.-+...   |...+               ++...-.+++ -|...++...|..+++...
T Consensus       156 H~i~----~~~~s~~~~a~~l~~w~~~~~~~~~~e---------------~dlf~~RaVL-~yL~l~n~~~A~~~~~~f~  215 (312)
T 2wpv_A          156 YFML----GTHDSMIKYVDLLWDWLCQVDDIEDST---------------VAEFFSRLVF-NYLFISNISFAHESKDIFL  215 (312)
T ss_dssp             HHHT----SCHHHHHHHHHHHHHHHHHTTCCCHHH---------------HHHHHHHHHH-HHHHTTBHHHHHHHHHHHH
T ss_pred             HHHh----CCCccHHHHHHHHHHHHHhcCCCCcch---------------HHHHHHHHHH-HHHHhcCHHHHHHHHHHHH
Confidence            6631    1111344444444433332   22222               1222222233 3445778888888877654

>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1

Probab=84.08  E-value=8.1  Score=29.24  Aligned_cols=114  Identities=16%  Similarity=0.083  Sum_probs=78.6

Q ss_pred             HHHHhcCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHhcCCChhHHHHHHHHHhhcCCCCccHH----HHHHHHHHHHh
Q 021791          127 KCLCSCGRIEDAEELLGEMVRNGVSPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDDLCVPNIH----TYNILIGMFMA  202 (307)
Q Consensus       127 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~----~~~~l~~~~~~  202 (307)
                      ....+.|+++++++....-++..+. |...-..+++.+|-.|++++|..-++...+..   |+..    .|..+|.+   
T Consensus         5 ~~ll~~g~L~~al~~~~~~VR~~P~-da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~---p~~~~~a~~yr~lI~a---   77 (273)
T 1zbp_A            5 KNALSEGQLQQALELLIEAIKASPK-DASLRSSFIELLCIDGDFERADEQLMQSIKLF---PEYLPGASQLRHLVKA---   77 (273)
T ss_dssp             HHHTTTTCHHHHHHHHHHHHHTCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC---GGGHHHHHHHHHHHHH---
T ss_pred             HHHHhCCCHHHHHHHHHHHHHhCCc-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC---chhhHHHHHHHHHHHH---
Confidence            4567889999999999888887654 88888999999999999999999998887763   4432    33333332   


Q ss_pred             cCcHHHHHHHHHHHhhCCCCC-----CHHhHHHHHHHHH--ccCcHHHHHHHHHHHHHc
Q 021791          203 LNRMDMVREIWNHVKGSELGL-----DLDSYTMLIHGLC--EKQKWKEACQYFVEMIEK  254 (307)
Q Consensus       203 ~~~~~~a~~~~~~~~~~~~~~-----~~~~~~~li~~~~--~~g~~~~a~~~~~~~~~~  254 (307)
                             +..=.++..-+-.|     ...-...++++..  ..|+.++|..+-.++.+.
T Consensus        78 -------E~~R~~vfaG~~~P~~~g~~~~w~~~ll~Al~~~~~G~~~~A~~lr~~A~e~  129 (273)
T 1zbp_A           78 -------AQARKDFAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEEL  129 (273)
T ss_dssp             -------HHHHHHHTTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred             -------HHHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHhc
Confidence                   22222222222222     3334555666654  469999999999988765

>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A

Probab=84.04  E-value=15  Score=29.64  Aligned_cols=166  Identities=6%  Similarity=-0.075  Sum_probs=106.2

Q ss_pred             HHHHHHHHHHhcCchhhHHHHHHHHHhc-CCCC---cHHHHHHHHHHHHhhCCCCcchhhHHHHHHHHHHHHHHHhcCCC
Q 021791            6 MYTSLIYGWCKINRIDMAERFLGEMIER-GVEP---NVVTYNVLLNGVCRRASLHPNERFEKTIRNAEKVFDEMRVRGIE   81 (307)
Q Consensus         6 ~~~~li~~~~~~g~~~~a~~~~~~~~~~-~~~p---~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~   81 (307)
                      +...|...|.+.|+.++..+++.....- +.-|   .......++..+.......     ...++-..+.++.....   
T Consensus        21 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~kak~~k~v~~l~~~~~~~~~~~-----~~~~~~~~~~~~~a~~~---   92 (394)
T 3txn_A           21 GILQQGELYKQEGKAKELADLIKVTRPFLSSISKAKAAKLVRSLVDMFLDMDAGT-----GIEVQLCKDCIEWAKQE---   92 (394)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHHHTTTGGGGSCHHHHHHHHHHHHHHHTTSCCCH-----HHHHHHHHHHHHHHHHT---
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhcCCCcH-----HHHHHHHHHHHHHHHHH---
Confidence            4456888999999999999998877543 2222   3345667777776643211     33344444444444332   


Q ss_pred             CCHHHH------HHHHHHHHhcCCchhHHHHHHHHHHcCCCCc-----hhhHHHHHHHHHhcCChHHHHHHHHHHHhC--
Q 021791           82 PDVTSF------SIVLHVYSRAHKPQLSLDKLNFMKEKGICPT-----VATYTSVVKCLCSCGRIEDAEELLGEMVRN--  148 (307)
Q Consensus        82 ~~~~~~------~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~-----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~--  148 (307)
                        ..+|      .-++..|...|++.+|.+++..+.+.--..|     ..++..-+..|...+++.++...+......  
T Consensus        93 --~r~flr~~l~~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~  170 (394)
T 3txn_A           93 --KRTFLRQSLEARLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTAN  170 (394)
T ss_dssp             --TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred             --HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhc
Confidence              1223      2678899999999999999988876421212     334666777888999999999999887643  


Q ss_pred             CCCCCHhhHHHH----HHHHh-cCCChhHHHHHHHHHh
Q 021791          149 GVSPSAETYNCF----FKEYR-GRKDANGAMKLYRQMK  181 (307)
Q Consensus       149 ~~~~~~~~~~~l----~~~~~-~~~~~~~a~~~~~~~~  181 (307)
                      .+.+++.....+    ...+. ..+++..|...|-+..
T Consensus       171 ai~~~p~i~a~i~~~~Gi~~l~~~rdyk~A~~~F~eaf  208 (394)
T 3txn_A          171 AIYCPPKVQGALDLQSGILHAADERDFKTAFSYFYEAF  208 (394)
T ss_dssp             HSCCCHHHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHH
T ss_pred             cCCCCHHHHHHHHHHhhHHHHHhccCHHHHHHHHHHHH
Confidence            222333332211    22355 7899999988887764

>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}

Probab=83.86  E-value=9.9  Score=27.30  Aligned_cols=59  Identities=15%  Similarity=0.040  Sum_probs=48.2

Q ss_pred             cCcHHHHHHHHHHHhhCCCCCC-HHhHHHHHHHHHccCcHHHHHHHHHHHHHcCCCCcHh
Q 021791          203 LNRMDMVREIWNHVKGSELGLD-LDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKV  261 (307)
Q Consensus       203 ~~~~~~a~~~~~~~~~~~~~~~-~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~  261 (307)
                      ++....+..+|..|...|+.-. ..-|......+-..|++++|.++|+.-++.+-.|-..
T Consensus        92 ~~~~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~~~A~P~~r  151 (202)
T 3esl_A           92 SNNFHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLELGAENNCRPYNR  151 (202)
T ss_dssp             TTCHHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSHHH
T ss_pred             ccccCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccHHH
Confidence            4457799999999998877644 3457888888899999999999999999998888443

>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A

Probab=83.16  E-value=0.0082  Score=49.37  Aligned_cols=187  Identities=13%  Similarity=0.100  Sum_probs=110.2

Q ss_pred             CHHHHHHHHHHHHhcCCchhHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHhhHHHHHH
Q 021791           83 DVTSFSIVLHVYSRAHKPQLSLDKLNFMKEKGICPTVATYTSVVKCLCSCGRIEDAEELLGEMVRNGVSPSAETYNCFFK  162 (307)
Q Consensus        83 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~  162 (307)
                      |+..|..++.+..+.|.+++-.+++...++..-  ++..=+.|+-+|++.++..+.++.+.       .|+..-...+.+
T Consensus        82 Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~~k--e~~IDteLi~ayAk~~rL~elEefl~-------~~N~A~iq~VGD  152 (624)
T 3lvg_A           82 DPSSYMEVVQAANTSGNWEELVKYLQMARKKAR--ESYVETELIFALAKTNRLAELEEFIN-------GPNNAHIQQVGD  152 (624)
T ss_dssp             CCCSSSHHHHHTTTSSCCTTHHHHHHTTSTTCC--STTTTHHHHHHHHTSCSSSTTTSTTS-------CCSSSCTHHHHH
T ss_pred             ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhc--ccccHHHHHHHHHhhCcHHHHHHHHc-------CCCcccHHHHHH
Confidence            666788899999999999999999987776633  55566789999999988766543331       245555556666


Q ss_pred             HHhcCCChhHHHHHHHHHhhcCC-------------------CCccHHHHHHHHHHHHhcCcHHHHHHH-----------
Q 021791          163 EYRGRKDANGAMKLYRQMKEDDL-------------------CVPNIHTYNILIGMFMALNRMDMVREI-----------  212 (307)
Q Consensus       163 ~~~~~~~~~~a~~~~~~~~~~~~-------------------~~~~~~~~~~l~~~~~~~~~~~~a~~~-----------  212 (307)
                      -|...|.++.|.-+|..+..-..                   -..++.||..+-.+|...+.+..|...           
T Consensus       153 rcf~e~lYeAAKilys~isN~akLAstLV~L~~yq~AVdaArKAns~ktWKeV~~ACvd~~EfrLAqicGLniIvhadeL  232 (624)
T 3lvg_A          153 RCYDEKMYDAAKLLYNNVSNFGRLASTLVHLGEYQAAVDGARKANSTRTWKEVCFACVDGKEFRLAQMCGLHIVVHADEL  232 (624)
T ss_dssp             HHHHSCCSTTSSTTGGGSCCCTTTSSSSSSCSGGGSSTTTTTTCCSSCSHHHHTHHHHHSCTTTTTTHHHHHHHCCSSCC
T ss_pred             HHHHccCHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHhCchHHHHHHHhcchhcccHHHH
Confidence            66666666666665554422111                   133566777777777766665554433           


Q ss_pred             -------------------HHHHhhCCCCCCHHhHHHHHHHHHccCcHHHHHHHHHHHHHcCCCCcHhhHHHHHHHHhhc
Q 021791          213 -------------------WNHVKGSELGLDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQS  273 (307)
Q Consensus       213 -------------------~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~  273 (307)
                                         ++.-... -+.....|+.|.-.|++- ++++..+-++...      +....--++++|.+.
T Consensus       233 ~elv~~YE~~G~f~ELIsLlEaglgl-ErAHmGmFTELaILYsKY-~PeKlmEHlklf~------sriNipKviracE~a  304 (624)
T 3lvg_A          233 EELINYYQDRGYFEELITMLEAALGL-ERAHMGMFTELAILYSKF-KPQKMREHLELFW------SRVNIPKVLRAAEQA  304 (624)
T ss_dssp             SGGGSSSSTTCCCTTSTTTHHHHTTS-TTCCHHHHHHHHHHHHSS-CTTHHHHHHTTSS------SSSCCTTTHHHHTTT
T ss_pred             HHHHHHHHhCCCHHHHHHHHHHHhCC-CchhHHHHHHHHHHHHhc-CHHHHHHHHHHHH------HhccHHHHHHHHHHH
Confidence                               3332221 122445566666656554 2233222222211      111223367777777


Q ss_pred             hhHHHHHHHHHHh
Q 021791          274 DMLRTWRRLKKKL  286 (307)
Q Consensus       274 g~~~~a~~~~~~~  286 (307)
                      -.|.++.-++.+-
T Consensus       305 hLW~ElvfLY~~y  317 (624)
T 3lvg_A          305 HLWAELVFLYDKY  317 (624)
T ss_dssp             TCHHHHHHHHHHH
T ss_pred             hhHHHHHHHHhcc
Confidence            7777766666543

>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}

Probab=81.29  E-value=7.7  Score=24.21  Aligned_cols=13  Identities=8%  Similarity=0.115  Sum_probs=5.7

Q ss_pred             HhcCCChhHHHHH
Q 021791          164 YRGRKDANGAMKL  176 (307)
Q Consensus       164 ~~~~~~~~~a~~~  176 (307)
                      +...|++++|..+
T Consensus        49 LmNrG~Yq~Al~l   61 (115)
T 2uwj_G           49 LANQGRYQEALAF   61 (115)
T ss_dssp             HHHTTCHHHHHGG
T ss_pred             HHcchhHHHHHHh
Confidence            3344444444433

>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}

Probab=80.65  E-value=8.2  Score=24.13  Aligned_cols=49  Identities=16%  Similarity=0.196  Sum_probs=20.8

Q ss_pred             HhcCCChhHHHHHHHHHhhcCCCCccHHHHHHHHHHHHhcCcHHHHHHHHHHHhhC
Q 021791          164 YRGRKDANGAMKLYRQMKEDDLCVPNIHTYNILIGMFMALNRMDMVREIWNHVKGS  219 (307)
Q Consensus       164 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~  219 (307)
                      +...|++++|..+.+...     .||...|.+|...  +.|..+++..-+.++..+
T Consensus        50 LmNrG~Yq~Al~l~~~~c-----~pdlepw~ALce~--rlGl~s~le~rL~~la~s   98 (116)
T 2p58_C           50 LMNRGDYASALQQGNKLA-----YPDLEPWLALCEY--RLGLGSALESRLNRLARS   98 (116)
T ss_dssp             HHHTTCHHHHHHHHTTSC-----CGGGHHHHHHHHH--HHTCHHHHHHHHHHHTTC
T ss_pred             HHcchhHHHHHHhcCCCC-----CchHHHHHHHHHH--hcccHHHHHHHHHHHHhC
Confidence            344455555544443332     3444444444322  344444444444344333

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	307
d1w3ba_	388	O-GlcNAc transferase p110 subunit, OGT {Human (Hom	99.85
d1w3ba_	388	O-GlcNAc transferase p110 subunit, OGT {Human (Hom	99.83
d1fcha_	323	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	99.73
d1fcha_	323	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	99.69
d2onda1	308	Cleavage stimulation factor 77 kDa subunit CSTF3 {	99.51
d2onda1	308	Cleavage stimulation factor 77 kDa subunit CSTF3 {	99.48
d2h6fa1	315	Protein farnesyltransferase alpha-subunit {Human (	99.47
d2h6fa1	315	Protein farnesyltransferase alpha-subunit {Human (	99.41
d1hz4a_	366	Transcription factor MalT domain III {Escherichia	99.38
d1dcea1	334	Rab geranylgeranyltransferase alpha-subunit, N-ter	99.33
d1xnfa_	259	Lipoprotein NlpI {Escherichia coli [TaxId: 562]}	99.31
d1xnfa_	259	Lipoprotein NlpI {Escherichia coli [TaxId: 562]}	99.29
d1dcea1	334	Rab geranylgeranyltransferase alpha-subunit, N-ter	99.13
d1hz4a_	366	Transcription factor MalT domain III {Escherichia	99.11
d1qqea_	290	Vesicular transport protein sec17 {Baker's yeast (	98.95
d1qqea_	290	Vesicular transport protein sec17 {Baker's yeast (	98.88
d1hh8a_	192	Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H	98.86
d1hh8a_	192	Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H	98.83
d1elwa_	117	Hop {Human (Homo sapiens) [TaxId: 9606]}	98.82
d1a17a_	159	Protein phosphatase 5 {Human (Homo sapiens) [TaxId	98.81
d1elwa_	117	Hop {Human (Homo sapiens) [TaxId: 9606]}	98.79
d1a17a_	159	Protein phosphatase 5 {Human (Homo sapiens) [TaxId	98.75
d2c2la1	201	STIP1 homology and U box-containing protein 1, STU	98.74
d2c2la1	201	STIP1 homology and U box-containing protein 1, STU	98.72
d1hxia_	112	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	98.6
d1hxia_	112	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	98.58
d1ouva_	265	Cysteine rich protein C (HcpC) {Helicobacter pylor	98.53
d1ouva_	265	Cysteine rich protein C (HcpC) {Helicobacter pylor	98.52
d1nzna_	122	Mitochondria fission protein Fis1 {Human (Homo sap	98.51
d1nzna_	122	Mitochondria fission protein Fis1 {Human (Homo sap	98.48
d1p5qa1	170	FKBP52 (FKBP4), C-terminal domain {Human (Homo sap	98.43
d1p5qa1	170	FKBP52 (FKBP4), C-terminal domain {Human (Homo sap	98.41
d2fbna1	153	Putative 70 kda peptidylprolyl isomerase PFL2275c	98.26
d1elra_	128	Hop {Human (Homo sapiens) [TaxId: 9606]}	98.25
d1elra_	128	Hop {Human (Homo sapiens) [TaxId: 9606]}	98.24
d2fbna1	153	Putative 70 kda peptidylprolyl isomerase PFL2275c	98.22
d1ihga1	169	Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}	98.21
d1b89a_	336	Clathrin heavy chain proximal leg segment {Cow (Bo	98.21
d1ihga1	169	Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}	98.17
d1kt1a1	168	FKBP51, C-terminal domain {Monkey (Saimiri bolivie	98.17
d1ya0a1	497	SMG-7 {Human (Homo sapiens) [TaxId: 9606]}	98.12
d1kt1a1	168	FKBP51, C-terminal domain {Monkey (Saimiri bolivie	98.11
d2ff4a2	179	Probable regulatory protein EmbR, middle domain {M	98.08
d1zu2a1	145	Mitochondrial import receptor subunit tom20-3 {Tha	98.05
d2ff4a2	179	Probable regulatory protein EmbR, middle domain {M	98.01
d1zbpa1	264	Hypothetical protein VPA1032 {Vibrio parahaemolyti	97.99
d1ya0a1	497	SMG-7 {Human (Homo sapiens) [TaxId: 9606]}	97.99
d1zbpa1	264	Hypothetical protein VPA1032 {Vibrio parahaemolyti	97.93
d1zu2a1	145	Mitochondrial import receptor subunit tom20-3 {Tha	97.92
d1b89a_	336	Clathrin heavy chain proximal leg segment {Cow (Bo	97.63
d2hr2a1	156	Hypothetical protein CT2138 {Chlorobium tepidum [T	97.49
d2hr2a1	156	Hypothetical protein CT2138 {Chlorobium tepidum [T	97.41
d1tjca_	95	Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human	97.29
d1tjca_	95	Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human	97.2
d1klxa_	133	Cysteine rich protein B (HcpB) {Helicobacter pylor	96.96
d1klxa_	133	Cysteine rich protein B (HcpB) {Helicobacter pylor	96.83
d1wy6a1	161	Hypothetical protein ST1625 {Archaeon Sulfolobus t	96.55
d1wy6a1	161	Hypothetical protein ST1625 {Archaeon Sulfolobus t	95.71
d1v54e_	105	Cytochrome c oxidase subunit E {Cow (Bos taurus) [	94.36
d2pqrb1	124	Mitochondria fission protein Fis1 {Baker's yeast (	94.1
d2pqrb1	124	Mitochondria fission protein Fis1 {Baker's yeast (	93.84
d1v54e_	105	Cytochrome c oxidase subunit E {Cow (Bos taurus) [	93.22

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.85  E-value=1e-17  Score=134.72  Aligned_cols=270  Identities=14%  Similarity=0.043  Sum_probs=221.4

Q ss_pred             cHHHHHHHHHHHHhcCchhhHHHHHHHHHhcCCCCcHHHHHHHHHHHHhhCCCCcchhhHHHHHHHHHHHHHHHhcCC--
Q 021791            3 NVKMYTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPNERFEKTIRNAEKVFDEMRVRGI--   80 (307)
Q Consensus         3 ~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~--   80 (307)
                      ++.++..+...|.+.|++++|.+.|++..+.. +-+..+|..+..++..          .|++++|...+........  
T Consensus        32 ~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~l~~~~~~----------~g~~~~A~~~~~~~~~~~~~~  100 (388)
T d1w3ba_          32 NTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN-PLLAEAYSNLGNVYKE----------RGQLQEAIEHYRHALRLKPDF  100 (388)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH----------HTCHHHHHHHHHHHHHHCTTC
T ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHhhh----------hcccccccccccccccccccc
Confidence            56788889999999999999999999998763 2356788888888888          5566666666555443311  


Q ss_pred             -----------------------------------------------------------------CCCHHHHHHHHHHHH
Q 021791           81 -----------------------------------------------------------------EPDVTSFSIVLHVYS   95 (307)
Q Consensus        81 -----------------------------------------------------------------~~~~~~~~~ll~~~~   95 (307)
                                                                                       +.+...+..+...+.
T Consensus       101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~  180 (388)
T d1w3ba_         101 IDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFN  180 (388)
T ss_dssp             HHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCTTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             ccccccccccccccccccccccccccccccccccccccccccccccccchhhhhHHHHHHhhccCcchhHHHHhhccccc
Confidence                                                                             113445566667778


Q ss_pred             hcCCchhHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHhcCCChhHHHH
Q 021791           96 RAHKPQLSLDKLNFMKEKGICPTVATYTSVVKCLCSCGRIEDAEELLGEMVRNGVSPSAETYNCFFKEYRGRKDANGAMK  175 (307)
Q Consensus        96 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~  175 (307)
                      ..|+++.|...++...+.... +..++..+...+...|++++|...+++....+.. +...+..+...+.+.|++++|..
T Consensus       181 ~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~  258 (388)
T d1w3ba_         181 AQGEIWLAIHHFEKAVTLDPN-FLDAYINLGNVLKEARIFDRAVAAYLRALSLSPN-HAVVHGNLACVYYEQGLIDLAID  258 (388)
T ss_dssp             TTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             ccCcHHHHHHHHHHHHHhCcc-cHHHHHHHhhhhhccccHHHHHHHHHHhHHHhhh-HHHHHHHHHHHHHHCCCHHHHHH
Confidence            889999999999988877533 6778889999999999999999999998876543 67788888999999999999999


Q ss_pred             HHHHHhhcCCCCccHHHHHHHHHHHHhcCcHHHHHHHHHHHhhCCCCCCHHhHHHHHHHHHccCcHHHHHHHHHHHHHcC
Q 021791          176 LYRQMKEDDLCVPNIHTYNILIGMFMALNRMDMVREIWNHVKGSELGLDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKG  255 (307)
Q Consensus       176 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~  255 (307)
                      .|++..+..  +.+..++..+...+...|++++|.+.++...... +.+...+..+...+...|++++|+..|++.++. 
T Consensus       259 ~~~~al~~~--p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~-  334 (388)
T d1w3ba_         259 TYRRAIELQ--PHFPDAYCNLANALKEKGSVAEAEDCYNTALRLC-PTHADSLNNLANIKREQGNIEEAVRLYRKALEV-  334 (388)
T ss_dssp             HHHHHHHTC--SSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTS-
T ss_pred             HHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHhhhccC-CccchhhhHHHHHHHHCCCHHHHHHHHHHHHHh-
Confidence            999998875  5678889999999999999999999999988764 457788899999999999999999999998865 


Q ss_pred             CCC-cHhhHHHHHHHHhhchhHHHHHHHHHHhhhcC
Q 021791          256 LLP-QKVTFETLYRGLIQSDMLRTWRRLKKKLDEES  290 (307)
Q Consensus       256 ~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~  290 (307)
                       .| +..++..+..++.+.|++++|...+++..+..
T Consensus       335 -~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~  369 (388)
T d1w3ba_         335 -FPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRIS  369 (388)
T ss_dssp             -CTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTC
T ss_pred             -CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence             34 45678889999999999999999999987644

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.83  E-value=4.7e-17  Score=130.78  Aligned_cols=264  Identities=12%  Similarity=0.029  Sum_probs=221.3

Q ss_pred             HHHHHHhcCchhhHHHHHHHHHhcCCCCcHHHHHHHHHHHHhhCCCCcchhhHHHHHHHHHHHHHHHhcCCCCCHHHHHH
Q 021791           10 LIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPNERFEKTIRNAEKVFDEMRVRGIEPDVTSFSI   89 (307)
Q Consensus        10 li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~   89 (307)
                      +...+.+.|++++|.+.|+++.+.. +-+...+..+..++.+          .|++++|...|++..+.. +-+..+|..
T Consensus         5 la~~~~~~G~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~----------~~~~~~A~~~~~~al~~~-p~~~~a~~~   72 (388)
T d1w3ba_           5 LAHREYQAGDFEAAERHCMQLWRQE-PDNTGVLLLLSSIHFQ----------CRRLDRSAHFSTLAIKQN-PLLAEAYSN   72 (388)
T ss_dssp             HHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH----------TTCHHHHHHHHHHHHHHC-TTCHHHHHH
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHH----------cCCHHHHHHHHHHHHHhC-CCCHHHHHH
Confidence            4566788999999999999998873 2256788888888888          889999999999998874 346788999


Q ss_pred             HHHHHHhcCCchhHHHHHHHHHHcCCC-----------------------------------------------------
Q 021791           90 VLHVYSRAHKPQLSLDKLNFMKEKGIC-----------------------------------------------------  116 (307)
Q Consensus        90 ll~~~~~~~~~~~a~~~~~~~~~~~~~-----------------------------------------------------  116 (307)
                      +..++.+.|++++|...+....+....                                                     
T Consensus        73 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  152 (388)
T d1w3ba_          73 LGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLE  152 (388)
T ss_dssp             HHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCTTCTHHHHHHHHHHHTTSCHH
T ss_pred             HHHHhhhhccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccchhh
Confidence            999999999999999998877654321                                                     


Q ss_pred             --------------CchhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHhcCCChhHHHHHHHHHhh
Q 021791          117 --------------PTVATYTSVVKCLCSCGRIEDAEELLGEMVRNGVSPSAETYNCFFKEYRGRKDANGAMKLYRQMKE  182 (307)
Q Consensus       117 --------------~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~  182 (307)
                                    .+...+..+...+...|++++|...+++.....+. +...+..+...+...|++++|...+.....
T Consensus       153 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~  231 (388)
T d1w3ba_         153 EAKACYLKAIETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPN-FLDAYINLGNVLKEARIFDRAVAAYLRALS  231 (388)
T ss_dssp             HHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTTTCTTHHHHHHHHHHH
T ss_pred             hhHHHHHHhhccCcchhHHHHhhcccccccCcHHHHHHHHHHHHHhCcc-cHHHHHHHhhhhhccccHHHHHHHHHHhHH
Confidence                          12344555667777889999999999998876543 677889999999999999999999999988


Q ss_pred             cCCCCccHHHHHHHHHHHHhcCcHHHHHHHHHHHhhCCCCCCHHhHHHHHHHHHccCcHHHHHHHHHHHHHcCCCCcHhh
Q 021791          183 DDLCVPNIHTYNILIGMFMALNRMDMVREIWNHVKGSELGLDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVT  262 (307)
Q Consensus       183 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~  262 (307)
                      ..  +.+...+..+...+.+.|++++|...+++..+... -+..++..+..++...|++++|...++..... .+.+...
T Consensus       232 ~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~  307 (388)
T d1w3ba_         232 LS--PNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQP-HFPDAYCNLANALKEKGSVAEAEDCYNTALRL-CPTHADS  307 (388)
T ss_dssp             HC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCS-SCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHH-CTTCHHH
T ss_pred             Hh--hhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHhhhcc-CCccchh
Confidence            76  56778888999999999999999999999988643 36788999999999999999999999998876 4567778


Q ss_pred             HHHHHHHHhhchhHHHHHHHHHHhhhcC
Q 021791          263 FETLYRGLIQSDMLRTWRRLKKKLDEES  290 (307)
Q Consensus       263 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~  290 (307)
                      +..+...+...|++++|...+++..+..
T Consensus       308 ~~~l~~~~~~~~~~~~A~~~~~~al~~~  335 (388)
T d1w3ba_         308 LNNLANIKREQGNIEEAVRLYRKALEVF  335 (388)
T ss_dssp             HHHHHHHHHTTTCHHHHHHHHHHHTTSC
T ss_pred             hhHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence            8889999999999999999999986643

>d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.73  E-value=5.1e-15  Score=116.23  Aligned_cols=230  Identities=10%  Similarity=-0.011  Sum_probs=185.2

Q ss_pred             HHHHHHhcCchhhHHHHHHHHHhcCCCCcHHHHHHHHHHHHhhCCCCcchhhHHHHHHHHHHHHHHHhcCCCCCHHHHHH
Q 021791           10 LIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPNERFEKTIRNAEKVFDEMRVRGIEPDVTSFSI   89 (307)
Q Consensus        10 li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~   89 (307)
                      ....+.+.|++++|...|+.+++.. +-+..+|..+..++..          .|++++|...|++..+.. +-+...+..
T Consensus        25 ~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~----------~~~~~~A~~~~~~al~~~-p~~~~~~~~   92 (323)
T d1fcha_          25 EGLRRLQEGDLPNAVLLFEAAVQQD-PKHMEAWQYLGTTQAE----------NEQELLAISALRRCLELK-PDNQTALMA   92 (323)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHH----------TTCHHHHHHHHHHHHHHC-TTCHHHHHH
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHH----------cCChHHHHHHHHhhhccc-ccccccccc
Confidence            4567889999999999999999873 2257788888888988          888999999999998874 336788999


Q ss_pred             HHHHHHhcCCchhHHHHHHHHHHcCCCCc--------------hhhHHHHHHHHHhcCChHHHHHHHHHHHhCCC-CCCH
Q 021791           90 VLHVYSRAHKPQLSLDKLNFMKEKGICPT--------------VATYTSVVKCLCSCGRIEDAEELLGEMVRNGV-SPSA  154 (307)
Q Consensus        90 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~--------------~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~-~~~~  154 (307)
                      +...+...|++++|.+.++..........              .......+..+...+.+.+|...+.+...... .++.
T Consensus        93 la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~p~~~~~  172 (323)
T d1fcha_          93 LAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDP  172 (323)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHTSTTTGGGCC---------------CTTHHHHHHHHHHHHHHHHHHHHHHSTTSCCH
T ss_pred             ccccccccccccccccchhhHHHhccchHHHHHhhhhhhhhcccccchhhHHHHHHhhHHHHHHHHHHHHHHHhhccccc
Confidence            99999999999999999999877532100              00111222334455677888888888776532 2456


Q ss_pred             hhHHHHHHHHhcCCChhHHHHHHHHHhhcCCCCccHHHHHHHHHHHHhcCcHHHHHHHHHHHhhCCCCCCHHhHHHHHHH
Q 021791          155 ETYNCFFKEYRGRKDANGAMKLYRQMKEDDLCVPNIHTYNILIGMFMALNRMDMVREIWNHVKGSELGLDLDSYTMLIHG  234 (307)
Q Consensus       155 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~  234 (307)
                      ..+..+...+...|++++|...+++.....  +.+..+|..+...+...|++++|.+.++.+.+... -+..+|..+..+
T Consensus       173 ~~~~~l~~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p-~~~~a~~~lg~~  249 (323)
T d1fcha_         173 DVQCGLGVLFNLSGEYDKAVDCFTAALSVR--PNDYLLWNKLGATLANGNQSEEAVAAYRRALELQP-GYIRSRYNLGIS  249 (323)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHH
T ss_pred             ccchhhHHHHHHHHHHhhhhcccccccccc--cccccchhhhhhcccccccchhHHHHHHHHHHHhh-ccHHHHHHHHHH
Confidence            778888899999999999999999998875  56788899999999999999999999999887642 267789999999


Q ss_pred             HHccCcHHHHHHHHHHHHHc
Q 021791          235 LCEKQKWKEACQYFVEMIEK  254 (307)
Q Consensus       235 ~~~~g~~~~a~~~~~~~~~~  254 (307)
                      |.+.|++++|+..|++.++.
T Consensus       250 ~~~~g~~~~A~~~~~~al~l  269 (323)
T d1fcha_         250 CINLGAHREAVEHFLEALNM  269 (323)
T ss_dssp             HHHHTCHHHHHHHHHHHHHH
T ss_pred             HHHCCCHHHHHHHHHHHHHh
Confidence            99999999999999998763

>d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.69  E-value=1.1e-14  Score=114.24  Aligned_cols=223  Identities=11%  Similarity=-0.010  Sum_probs=179.7

Q ss_pred             HHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCchhHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCChHHHHHH
Q 021791           62 EKTIRNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHKPQLSLDKLNFMKEKGICPTVATYTSVVKCLCSCGRIEDAEEL  141 (307)
Q Consensus        62 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~  141 (307)
                      .|++++|...|+++.+.. +-+...|..+..++...|++++|...+.+..+.... +...+..+...|...|++++|.+.
T Consensus        32 ~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~~~~~~A~~~  109 (323)
T d1fcha_          32 EGDLPNAVLLFEAAVQQD-PKHMEAWQYLGTTQAENEQELLAISALRRCLELKPD-NQTALMALAVSFTNESLQRQACEI  109 (323)
T ss_dssp             TTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             cCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCChHHHHHHHHhhhccccc-cccccccccccccccccccccccc
Confidence            788999999999999874 336889999999999999999999999999887543 678889999999999999999999


Q ss_pred             HHHHHhCCCCCC--------------HhhHHHHHHHHhcCCChhHHHHHHHHHhhcCCCCccHHHHHHHHHHHHhcCcHH
Q 021791          142 LGEMVRNGVSPS--------------AETYNCFFKEYRGRKDANGAMKLYRQMKEDDLCVPNIHTYNILIGMFMALNRMD  207 (307)
Q Consensus       142 ~~~~~~~~~~~~--------------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~  207 (307)
                      +++.........              .......+..+...+...++...+.+.........+..++..+...+...|+++
T Consensus       110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~p~~~~~~~~~~l~~~~~~~~~~~  189 (323)
T d1fcha_         110 LRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYD  189 (323)
T ss_dssp             HHHHHHTSTTTGGGCC---------------CTTHHHHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHH
T ss_pred             hhhHHHhccchHHHHHhhhhhhhhcccccchhhHHHHHHhhHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHh
Confidence            999887532210              000111222334445677888888887765432456778889999999999999


Q ss_pred             HHHHHHHHHhhCCCCCCHHhHHHHHHHHHccCcHHHHHHHHHHHHHcCCCCcHhhHHHHHHHHhhchhHHHHHHHHHHhh
Q 021791          208 MVREIWNHVKGSELGLDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLD  287 (307)
Q Consensus       208 ~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~  287 (307)
                      +|...++........ +...|..+..+|...|++++|...|++.++.. +-+..++..+..+|.+.|++++|.+.+++..
T Consensus       190 ~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al  267 (323)
T d1fcha_         190 KAVDCFTAALSVRPN-DYLLWNKLGATLANGNQSEEAVAAYRRALELQ-PGYIRSRYNLGISCINLGAHREAVEHFLEAL  267 (323)
T ss_dssp             HHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred             hhhcccccccccccc-cccchhhhhhcccccccchhHHHHHHHHHHHh-hccHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence            999999998876433 67889999999999999999999999998763 2356678889999999999999999999875


Q ss_pred             h
Q 021791          288 E  288 (307)
Q Consensus       288 ~  288 (307)
                      +
T Consensus       268 ~  268 (323)
T d1fcha_         268 N  268 (323)
T ss_dssp             H
T ss_pred             H
Confidence            5

>d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: HAT/Suf repeat
domain: Cleavage stimulation factor 77 kDa subunit CSTF3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.51  E-value=5e-11  Score=92.45  Aligned_cols=231  Identities=9%  Similarity=-0.019  Sum_probs=168.8

Q ss_pred             hhhHHHHHHHHHhcCCCCcHHHHHHHHHHHHhhCCC----CcchhhHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHH
Q 021791           20 IDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASL----HPNERFEKTIRNAEKVFDEMRVRGIEPDVTSFSIVLHVYS   95 (307)
Q Consensus        20 ~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~----~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~   95 (307)
                      .+++..+|++++.. ++-+...|...+.-+...+..    .....-.+..+++..+|++..+...+.+...|...+....
T Consensus        32 ~~Rv~~vyerAl~~-~~~~~~lW~~y~~~~~~~~~~~~~~~~~~~~~~~~~~a~~i~~ral~~~~p~~~~l~~~ya~~~~  110 (308)
T d2onda1          32 TKRVMFAYEQCLLV-LGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEE  110 (308)
T ss_dssp             HHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHHcCchHHHHHHHhhcccchHHHHHHHHHHHHHcCCCCHHHHHHHHHHHH
Confidence            45678888888776 233556666655544331110    0000114567889999999887655556778888888899


Q ss_pred             hcCCchhHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHhhHHHHHHH-HhcCCChhHHH
Q 021791           96 RAHKPQLSLDKLNFMKEKGICPTVATYTSVVKCLCSCGRIEDAEELLGEMVRNGVSPSAETYNCFFKE-YRGRKDANGAM  174 (307)
Q Consensus        96 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~a~  174 (307)
                      +.|+.+.|..+|+.+.+........+|...+..+.+.|+.+.|.++|+.+.+.+.. +...|...... +...|+.+.|.
T Consensus       111 ~~~~~~~a~~i~~~~l~~~~~~~~~~w~~~~~~~~~~~~~~~ar~i~~~al~~~~~-~~~~~~~~a~~e~~~~~~~~~a~  189 (308)
T d2onda1         111 SRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDART-RHHVYVTAALMEYYCSKDKSVAF  189 (308)
T ss_dssp             HTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTTC-CTHHHHHHHHHHHHTSCCHHHHH
T ss_pred             hcccHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHhccCHHHHH
Confidence            99999999999999887654434557888999999999999999999998876543 34444443333 44568889999


Q ss_pred             HHHHHHhhcCCCCccHHHHHHHHHHHHhcCcHHHHHHHHHHHhhCC-CCCC--HHhHHHHHHHHHccCcHHHHHHHHHHH
Q 021791          175 KLYRQMKEDDLCVPNIHTYNILIGMFMALNRMDMVREIWNHVKGSE-LGLD--LDSYTMLIHGLCEKQKWKEACQYFVEM  251 (307)
Q Consensus       175 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~--~~~~~~li~~~~~~g~~~~a~~~~~~~  251 (307)
                      .+|+.+....  +.+...|...+....+.|+.+.|+.+|++..... ..|.  ...|...+..-...|+.+.+..+++++
T Consensus       190 ~i~e~~l~~~--p~~~~~w~~y~~~~~~~g~~~~aR~~fe~ai~~~~~~~~~~~~iw~~~~~fE~~~G~~~~~~~~~~r~  267 (308)
T d2onda1         190 KIFELGLKKY--GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRR  267 (308)
T ss_dssp             HHHHHHHHHH--TTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHH
T ss_pred             HHHHHHHHhh--hhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            9999998874  5677888999999999999999999999987653 2332  346888888778889999999999888


Q ss_pred             HHc
Q 021791          252 IEK  254 (307)
Q Consensus       252 ~~~  254 (307)
                      .+.
T Consensus       268 ~~~  270 (308)
T d2onda1         268 FTA  270 (308)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            764

>d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: HAT/Suf repeat
domain: Cleavage stimulation factor 77 kDa subunit CSTF3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.48  E-value=2.8e-11  Score=93.86  Aligned_cols=222  Identities=9%  Similarity=0.052  Sum_probs=170.5

Q ss_pred             HHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhc--------------CCchhHHHHHHHHHHcCCCCchhhHHHHHHHH
Q 021791           64 TIRNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRA--------------HKPQLSLDKLNFMKEKGICPTVATYTSVVKCL  129 (307)
Q Consensus        64 ~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~--------------~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~  129 (307)
                      ..+.+..+|+++... ++-+...|...+..+...              +..+++..+|+...+...+.+...|...+..+
T Consensus        31 ~~~Rv~~vyerAl~~-~~~~~~lW~~y~~~~~~~~~~~~~~~~~~~~~~~~~~a~~i~~ral~~~~p~~~~l~~~ya~~~  109 (308)
T d2onda1          31 ITKRVMFAYEQCLLV-LGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYE  109 (308)
T ss_dssp             HHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHHcCchHHHHHHHhhcccchHHHHHHHHHHHHHcCCCCHHHHHHHHHHH
Confidence            345566677777665 234566666665544322              23477888999888765555677888889999


Q ss_pred             HhcCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHhcCCChhHHHHHHHHHhhcCCCCccHHHHHHHHHH-HHhcCcHHH
Q 021791          130 CSCGRIEDAEELLGEMVRNGVSPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDDLCVPNIHTYNILIGM-FMALNRMDM  208 (307)
Q Consensus       130 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~  208 (307)
                      .+.|+++.|..+|+++...........|...+..+.+.++.+.|..+|....+..  +.+...|...... +...|+.+.
T Consensus       110 ~~~~~~~~a~~i~~~~l~~~~~~~~~~w~~~~~~~~~~~~~~~ar~i~~~al~~~--~~~~~~~~~~a~~e~~~~~~~~~  187 (308)
T d2onda1         110 ESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA--RTRHHVYVTAALMEYYCSKDKSV  187 (308)
T ss_dssp             HHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTST--TCCTHHHHHHHHHHHHTSCCHHH
T ss_pred             HhcccHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHcCChHHHHHHHHHHHHhC--CCcHHHHHHHHHHHHHhccCHHH
Confidence            9999999999999999886554445678999999999999999999999998876  4455555544443 345689999


Q ss_pred             HHHHHHHHhhCCCCCCHHhHHHHHHHHHccCcHHHHHHHHHHHHHcC-CCCc--HhhHHHHHHHHhhchhHHHHHHHHHH
Q 021791          209 VREIWNHVKGSELGLDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKG-LLPQ--KVTFETLYRGLIQSDMLRTWRRLKKK  285 (307)
Q Consensus       209 a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~-~~p~--~~~~~~l~~~~~~~g~~~~a~~~~~~  285 (307)
                      |..+|+.+.... +.+...|...+..+...|+++.|..+|++.++.. ..|+  ...|...+..-...|+.+.+..+.++
T Consensus       188 a~~i~e~~l~~~-p~~~~~w~~y~~~~~~~g~~~~aR~~fe~ai~~~~~~~~~~~~iw~~~~~fE~~~G~~~~~~~~~~r  266 (308)
T d2onda1         188 AFKIFELGLKKY-GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKR  266 (308)
T ss_dssp             HHHHHHHHHHHH-TTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHH
T ss_pred             HHHHHHHHHHhh-hhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence            999999999863 3478889999999999999999999999998863 3443  24678888877888999999999998


Q ss_pred             hhhc
Q 021791          286 LDEE  289 (307)
Q Consensus       286 ~~~~  289 (307)
                      +.+.
T Consensus       267 ~~~~  270 (308)
T d2onda1         267 RFTA  270 (308)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            7553

>d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Protein farnesyltransferase alpha-subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.47  E-value=1.3e-10  Score=90.16  Aligned_cols=232  Identities=8%  Similarity=0.043  Sum_probs=171.9

Q ss_pred             HHHHHHHHHHHHhcCchhhHHHHHHHHHhcCCCC-cHHHHHHHHHHHHhhCCCCcchhhHH-HHHHHHHHHHHHHhcCCC
Q 021791            4 VKMYTSLIYGWCKINRIDMAERFLGEMIERGVEP-NVVTYNVLLNGVCRRASLHPNERFEK-TIRNAEKVFDEMRVRGIE   81 (307)
Q Consensus         4 ~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p-~~~~~~~ll~~~~~~~~~~~~~~~~~-~~~~a~~~~~~~~~~~~~   81 (307)
                      ..+|+.+...+.+.+.+++|+++++++++.  .| +...|+....++..          .+ ++++|+..++...+.. +
T Consensus        43 ~~a~~~~~~~~~~~e~~~~Al~~~~~ai~l--nP~~~~a~~~r~~~l~~----------l~~~~~eal~~~~~al~~~-p  109 (315)
T d2h6fa1          43 RDVYDYFRAVLQRDERSERAFKLTRDAIEL--NAANYTVWHFRRVLLKS----------LQKDLHEEMNYITAIIEEQ-P  109 (315)
T ss_dssp             HHHHHHHHHHHHHTCCCHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHH----------TTCCHHHHHHHHHHHHHHC-T
T ss_pred             HHHHHHHHHHHHhCCchHHHHHHHHHHHHH--CCCChHHHHHHHHHHHH----------hCcCHHHHHHHHHHHHHHH-H
Confidence            456777778888889999999999999987  44 55577777777666          44 4899999999988774 3


Q ss_pred             CCHHHHHHHHHHHHhcCCchhHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHhhHHHHH
Q 021791           82 PDVTSFSIVLHVYSRAHKPQLSLDKLNFMKEKGICPTVATYTSVVKCLCSCGRIEDAEELLGEMVRNGVSPSAETYNCFF  161 (307)
Q Consensus        82 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~  161 (307)
                      -+..+|..+...+.+.|++++|++.+..+.+.... +...|..+...+.+.|++++|+..++++.+.++. +...|+.+.
T Consensus       110 ~~~~a~~~~~~~~~~l~~~~eAl~~~~kal~~dp~-n~~a~~~~~~~~~~~~~~~~Al~~~~~al~~~p~-n~~a~~~r~  187 (315)
T d2h6fa1         110 KNYQVWHHRRVLVEWLRDPSQELEFIADILNQDAK-NYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVR-NNSVWNQRY  187 (315)
T ss_dssp             TCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTT-CHHHHHHHH
T ss_pred             hhhhHHHHHhHHHHhhccHHHHHHHHhhhhhhhhc-chHHHHHHHHHHHHHHhhHHHHHHHHHHHHHCCc-cHHHHHHHH
Confidence            47889999999999999999999999999987644 7889999999999999999999999999987654 677787776


Q ss_pred             HHHhcCCC------hhHHHHHHHHHhhcCCCCccHHHHHHHHHHHHhcCcHHHHHHHHHHHhhCCCCC-CHHhHHHHHHH
Q 021791          162 KEYRGRKD------ANGAMKLYRQMKEDDLCVPNIHTYNILIGMFMALNRMDMVREIWNHVKGSELGL-DLDSYTMLIHG  234 (307)
Q Consensus       162 ~~~~~~~~------~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~li~~  234 (307)
                      ..+.+.+.      +++|+..+.......  +.+...|..+...+... ..+++.+.++...+....+ +...+..++..
T Consensus       188 ~~l~~~~~~~~~~~~~~ai~~~~~al~~~--P~~~~~~~~l~~ll~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~  264 (315)
T d2h6fa1         188 FVISNTTGYNDRAVLEREVQYTLEMIKLV--PHNESAWNYLKGILQDR-GLSKYPNLLNQLLDLQPSHSSPYLIAFLVDI  264 (315)
T ss_dssp             HHHHHTTCSCSHHHHHHHHHHHHHHHHHS--TTCHHHHHHHHHHHTTT-CGGGCHHHHHHHHHHTTTCCCHHHHHHHHHH
T ss_pred             HHHHHccccchhhhhHHhHHHHHHHHHhC--CCchHHHHHHHHHHHhc-ChHHHHHHHHHHHHhCCCcCCHHHHHHHHHH
Confidence            66655554      467888888887775  56777777776665444 3566777777665543222 44555666666


Q ss_pred             HHcc---------CcHHHHHHHHHHHHH
Q 021791          235 LCEK---------QKWKEACQYFVEMIE  253 (307)
Q Consensus       235 ~~~~---------g~~~~a~~~~~~~~~  253 (307)
                      |...         ..+++|..++..+..
T Consensus       265 y~~~~~~~~~~~~~~~~ka~~l~~~l~~  292 (315)
T d2h6fa1         265 YEDMLENQCDNKEDILNKALELCEILAK  292 (315)
T ss_dssp             HHHHHHTTCSSHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHhcCHHHHHHHHHHHHHHHHHHHH
Confidence            5432         234555555555443

>d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Protein farnesyltransferase alpha-subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.41  E-value=1.3e-10  Score=90.19  Aligned_cols=231  Identities=9%  Similarity=0.006  Sum_probs=177.8

Q ss_pred             HHHHHHHHHHHhhCCCCcchhhHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcC-CchhHHHHHHHHHHcCCCCc
Q 021791           40 VTYNVLLNGVCRRASLHPNERFEKTIRNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAH-KPQLSLDKLNFMKEKGICPT  118 (307)
Q Consensus        40 ~~~~~ll~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~-~~~~a~~~~~~~~~~~~~~~  118 (307)
                      ..|+.+-..+.+          .+..++|++.++.+++.. +-+...|+....++...| ++++|+..++...+.... +
T Consensus        44 ~a~~~~~~~~~~----------~e~~~~Al~~~~~ai~ln-P~~~~a~~~r~~~l~~l~~~~~eal~~~~~al~~~p~-~  111 (315)
T d2h6fa1          44 DVYDYFRAVLQR----------DERSERAFKLTRDAIELN-AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPK-N  111 (315)
T ss_dssp             HHHHHHHHHHHH----------TCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTT-C
T ss_pred             HHHHHHHHHHHh----------CCchHHHHHHHHHHHHHC-CCChHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHh-h
Confidence            455555555556          567799999999999884 346778898888888876 589999999999888654 7


Q ss_pred             hhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHhcCCChhHHHHHHHHHhhcCCCCccHHHHHHHHH
Q 021791          119 VATYTSVVKCLCSCGRIEDAEELLGEMVRNGVSPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDDLCVPNIHTYNILIG  198 (307)
Q Consensus       119 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~  198 (307)
                      ..+|..+...+.+.|++++|+..++++.+.... +...|..+...+...|++++|+..++...+.+  +.+...|+.+..
T Consensus       112 ~~a~~~~~~~~~~l~~~~eAl~~~~kal~~dp~-n~~a~~~~~~~~~~~~~~~~Al~~~~~al~~~--p~n~~a~~~r~~  188 (315)
T d2h6fa1         112 YQVWHHRRVLVEWLRDPSQELEFIADILNQDAK-NYHAWQHRQWVIQEFKLWDNELQYVDQLLKED--VRNNSVWNQRYF  188 (315)
T ss_dssp             HHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHC--TTCHHHHHHHHH
T ss_pred             hhHHHHHhHHHHhhccHHHHHHHHhhhhhhhhc-chHHHHHHHHHHHHHHhhHHHHHHHHHHHHHC--CccHHHHHHHHH
Confidence            889999999999999999999999999987655 78999999999999999999999999999986  677888888877


Q ss_pred             HHHhcCc------HHHHHHHHHHHhhCCCCCCHHhHHHHHHHHHccCcHHHHHHHHHHHHHcCCCC-cHhhHHHHHHHHh
Q 021791          199 MFMALNR------MDMVREIWNHVKGSELGLDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLP-QKVTFETLYRGLI  271 (307)
Q Consensus       199 ~~~~~~~------~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p-~~~~~~~l~~~~~  271 (307)
                      .+.+.+.      +++|.+.+........ -+...|+.+...+...| .+++...++...+....+ +...+..+...|.
T Consensus       189 ~l~~~~~~~~~~~~~~ai~~~~~al~~~P-~~~~~~~~l~~ll~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~y~  266 (315)
T d2h6fa1         189 VISNTTGYNDRAVLEREVQYTLEMIKLVP-HNESAWNYLKGILQDRG-LSKYPNLLNQLLDLQPSHSSPYLIAFLVDIYE  266 (315)
T ss_dssp             HHHHTTCSCSHHHHHHHHHHHHHHHHHST-TCHHHHHHHHHHHTTTC-GGGCHHHHHHHHHHTTTCCCHHHHHHHHHHHH
T ss_pred             HHHHccccchhhhhHHhHHHHHHHHHhCC-CchHHHHHHHHHHHhcC-hHHHHHHHHHHHHhCCCcCCHHHHHHHHHHHH
Confidence            7766654      6788888888887643 36777877766655444 577788888777653222 3445556666654


Q ss_pred             hc---------hhHHHHHHHHHHhh
Q 021791          272 QS---------DMLRTWRRLKKKLD  287 (307)
Q Consensus       272 ~~---------g~~~~a~~~~~~~~  287 (307)
                      ..         +.+++|..++..+.
T Consensus       267 ~~~~~~~~~~~~~~~ka~~l~~~l~  291 (315)
T d2h6fa1         267 DMLENQCDNKEDILNKALELCEILA  291 (315)
T ss_dssp             HHHHTTCSSHHHHHHHHHHHHHHHH
T ss_pred             HHHhcCHHHHHHHHHHHHHHHHHHH
Confidence            32         34566666665543

>d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Transcription factor MalT domain III
domain: Transcription factor MalT domain III
species: Escherichia coli [TaxId: 562]

Probab=99.38  E-value=8.9e-10  Score=86.57  Aligned_cols=273  Identities=10%  Similarity=-0.026  Sum_probs=193.6

Q ss_pred             HHHHHHHHHHhcCchhhHHHHHHHHHhcCCCCc----HHHHHHHHHHHHhhCCCCcchhhHHHHHHHHHHHHHHHhcC--
Q 021791            6 MYTSLIYGWCKINRIDMAERFLGEMIERGVEPN----VVTYNVLLNGVCRRASLHPNERFEKTIRNAEKVFDEMRVRG--   79 (307)
Q Consensus         6 ~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~----~~~~~~ll~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~--   79 (307)
                      ........+...|++++|++++++..+.....+    ...+..+..++..          .|++++|...|++..+..  
T Consensus        14 ~~~lrA~~~~~~g~~~~A~~~~~~aL~~~~~~~~~~~~~a~~~lg~~~~~----------~g~~~~A~~~~~~a~~~~~~   83 (366)
T d1hz4a_          14 FNALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHC----------KGELTRSLALMQQTEQMARQ   83 (366)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHH----------HTCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHhhCcCCCcHHHHHHHHHHHHHHHH----------CCCHHHHHHHHHHHHHHHHh
Confidence            334455667899999999999999987622111    2356666677777          788999999998876531  


Q ss_pred             --CC-CCHHHHHHHHHHHHhcCCchhHHHHHHHHHHc----CCCC---chhhHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 021791           80 --IE-PDVTSFSIVLHVYSRAHKPQLSLDKLNFMKEK----GICP---TVATYTSVVKCLCSCGRIEDAEELLGEMVRNG  149 (307)
Q Consensus        80 --~~-~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~----~~~~---~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~  149 (307)
                        .. .....+..+...+...|++..+...+......    +...   ....+..+...+...|+++.+...+.......
T Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~  163 (366)
T d1hz4a_          84 HDVWHYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVL  163 (366)
T ss_dssp             TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT
T ss_pred             hcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhcccchhhHHHHHHHHHHHHHHHhcchhhhHHHHHHHHHHh
Confidence              11 12345667777888999999999998876542    2111   12345667788899999999999998887642


Q ss_pred             C----CCCHhhHHHHHHHHhcCCChhHHHHHHHHHhhcCC---CCc--cHHHHHHHHHHHHhcCcHHHHHHHHHHHhhCC
Q 021791          150 V----SPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDDL---CVP--NIHTYNILIGMFMALNRMDMVREIWNHVKGSE  220 (307)
Q Consensus       150 ~----~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~---~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~  220 (307)
                      .    ......+......+...++...+...+.+......   ..+  ....+..+...+...|+++.|...+.......
T Consensus       164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~  243 (366)
T d1hz4a_         164 SSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPE  243 (366)
T ss_dssp             TTSCGGGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCC
T ss_pred             hhhhhhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhcccCchHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhc
Confidence            2    22344556666778888999988888876644211   011  23345667778889999999999999877653


Q ss_pred             CCCC---HHhHHHHHHHHHccCcHHHHHHHHHHHHHc----CCCCc-HhhHHHHHHHHhhchhHHHHHHHHHHhhh
Q 021791          221 LGLD---LDSYTMLIHGLCEKQKWKEACQYFVEMIEK----GLLPQ-KVTFETLYRGLIQSDMLRTWRRLKKKLDE  288 (307)
Q Consensus       221 ~~~~---~~~~~~li~~~~~~g~~~~a~~~~~~~~~~----~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~  288 (307)
                      ...+   ...+..+..++...|++++|...+++.+..    +..|+ ..++..+...+...|++++|.+.+++..+
T Consensus       244 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~Al~  319 (366)
T d1hz4a_         244 FANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALK  319 (366)
T ss_dssp             CTTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred             cccchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhcccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence            3322   344666788999999999999999988643    44444 34677788899999999999999987643

>d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.33  E-value=4.3e-11  Score=93.94  Aligned_cols=267  Identities=8%  Similarity=-0.056  Sum_probs=165.9

Q ss_pred             HHHHHHHhcCchhhHHHHHHHHHhcCCCCcH-HHHHHHHHHHHhhCCCCcchhhHHHHHHHHHHHHHHHhcCCCCCHHHH
Q 021791            9 SLIYGWCKINRIDMAERFLGEMIERGVEPNV-VTYNVLLNGVCRRASLHPNERFEKTIRNAEKVFDEMRVRGIEPDVTSF   87 (307)
Q Consensus         9 ~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~-~~~~~ll~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~   87 (307)
                      .++......+..++|+++++..++.  .|+. ..|+..-..+...+.........+.+++|+..++...+.. +.+...|
T Consensus        34 ~~~~~~~~~~~~~~al~~~~~~l~~--~P~~~~a~~~r~~~l~~l~~~~~~~~~~~~~~~al~~~~~~l~~~-pk~~~~~  110 (334)
T d1dcea1          34 AVFQKRQAGELDESVLELTSQILGA--NPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYGTW  110 (334)
T ss_dssp             HHHHHHHTTCCSHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHH
T ss_pred             HHHHHHhcccccHHHHHHHHHHHHH--CCCcHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHhC-CCcHHHH
Confidence            3333333334458999999999886  4554 4565544444443333333334788999999999998874 4477788


Q ss_pred             HHHHHHHHhcCC--chhHHHHHHHHHHcCCCCchhhHH-HHHHHHHhcCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHH
Q 021791           88 SIVLHVYSRAHK--PQLSLDKLNFMKEKGICPTVATYT-SVVKCLCSCGRIEDAEELLGEMVRNGVSPSAETYNCFFKEY  164 (307)
Q Consensus        88 ~~ll~~~~~~~~--~~~a~~~~~~~~~~~~~~~~~~~~-~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~  164 (307)
                      ..+..++...+.  ++++...+..+.+.... +...+. .....+...+.+++|+..++.+...++. +...|+.+...+
T Consensus       111 ~~~~~~~~~~~~~~~~~a~~~~~~al~~~~~-~~~~~~~~~~~~~~~~~~~~~Al~~~~~~i~~~p~-~~~a~~~l~~~~  188 (334)
T d1dcea1         111 HHRCWLLSRLPEPNWARELELCARFLEADER-NFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFS-NYSSWHYRSCLL  188 (334)
T ss_dssp             HHHHHHHHTCSSCCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCC-CHHHHHHHHHHH
T ss_pred             HHhhHHHHHhccccHHHHHHHHHHHHhhCch-hhhhhhhHHHHHHHhccccHHHHHHHHHHHHcCCC-CHHHHHHHHHHH
Confidence            888888777664  78999999999887543 455544 4557777889999999999999887665 788888888888


Q ss_pred             hcCCChhHHHHHHHHHhhcCCCCccHHHHHHHHHHHHhcCcHHHHHHHHHHHhhCCCCCCHHhHHHHHHHHHccCcHHHH
Q 021791          165 RGRKDANGAMKLYRQMKEDDLCVPNIHTYNILIGMFMALNRMDMVREIWNHVKGSELGLDLDSYTMLIHGLCEKQKWKEA  244 (307)
Q Consensus       165 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a  244 (307)
                      .+.|++++|...+.......   |+.   ..+...+...+..+++...+....... +++...+..+...+...|++++|
T Consensus       189 ~~~~~~~~A~~~~~~~~~~~---~~~---~~~~~~~~~l~~~~~a~~~~~~~l~~~-~~~~~~~~~l~~~~~~~~~~~~a  261 (334)
T d1dcea1         189 PQLHPQPDSGPQGRLPENVL---LKE---LELVQNAFFTDPNDQSAWFYHRWLLGR-AEPLFRCELSVEKSTVLQSELES  261 (334)
T ss_dssp             HHHSCCCCSSSCCSSCHHHH---HHH---HHHHHHHHHHCSSCSHHHHHHHHHHSC-CCCSSSCCCCHHHHHHHHHHHHH
T ss_pred             HHhcCHHHHHHHHHHhHHhH---HHH---HHHHHHHHHhcchhHHHHHHHHHHHhC-cchhhHHHHHHHHHHHHhhHHHH
Confidence            88888876655444333321   111   112222334444555555555544432 22333444445555555666666


Q ss_pred             HHHHHHHHHcCCCCcHhhHHHHHHHHhhchhHHHHHHHHHHhhh
Q 021791          245 CQYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDE  288 (307)
Q Consensus       245 ~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~  288 (307)
                      ...+.+..+.. +-+..++..+..++...|+.++|.+.+++..+
T Consensus       262 ~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~~~eA~~~~~~ai~  304 (334)
T d1dcea1         262 CKELQELEPEN-KWCLLTIILLMRALDPLLYEKETLQYFSTLKA  304 (334)
T ss_dssp             HHHHHHHCTTC-HHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhhC-chHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence            66666554331 11233455555566666666666666666544

>d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Lipoprotein NlpI
species: Escherichia coli [TaxId: 562]

Probab=99.31  E-value=1.3e-10  Score=87.65  Aligned_cols=217  Identities=8%  Similarity=-0.038  Sum_probs=129.2

Q ss_pred             chhhHHHHHHHHHhcCC-CC--cHHHHHHHHHHHHhhCCCCcchhhHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHH
Q 021791           19 RIDMAERFLGEMIERGV-EP--NVVTYNVLLNGVCRRASLHPNERFEKTIRNAEKVFDEMRVRGIEPDVTSFSIVLHVYS   95 (307)
Q Consensus        19 ~~~~a~~~~~~~~~~~~-~p--~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~   95 (307)
                      +.+.++.-+++...... .+  ...+|..+-.+|.+          .|++++|...|++..+.. +-+..+|..+..++.
T Consensus        14 ~~e~al~~~~e~l~~~~~~~~~~a~~~~~~G~~y~~----------~g~~~~A~~~~~~al~l~-p~~~~a~~~lg~~~~   82 (259)
T d1xnfa_          14 QQEVILARMEQILASRALTDDERAQLLYERGVLYDS----------LGLRALARNDFSQALAIR-PDMPEVFNYLGIYLT   82 (259)
T ss_dssp             HHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHH----------TTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHH----------CCCHHHHHHHHHHhhccC-CCCHHHHhhhchHHH
Confidence            45566666667665422 11  22355555666666          777888888888887763 336777888888888


Q ss_pred             hcCCchhHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHhcCCChhHHHH
Q 021791           96 RAHKPQLSLDKLNFMKEKGICPTVATYTSVVKCLCSCGRIEDAEELLGEMVRNGVSPSAETYNCFFKEYRGRKDANGAMK  175 (307)
Q Consensus        96 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~  175 (307)
                      +.|++++|++.|++..+.... +..++..+..+|...|++++|...|+...+.... +......+...+.+.+..+....
T Consensus        83 ~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~~~~~  160 (259)
T d1xnfa_          83 QAGNFDAAYEAFDSVLELDPT-YNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDPN-DPFRSLWLYLAEQKLDEKQAKEV  160 (259)
T ss_dssp             HTTCHHHHHHHHHHHHHHCTT-CTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHCHHHHHHH
T ss_pred             HHHHHHHhhhhhhHHHHHHhh-hhhhHHHHHHHHHHHhhHHHHHHHHHHHHhhccc-cHHHHHHHHHHHHHhhhHHHHHH
Confidence            888888888888888876533 5667777888888888888888888888776432 34443334444455555555555


Q ss_pred             HHHHHhhcCCCCccHHHHHHHHHHHHhcCc----HHHHHHHHHHHhhCCCCC-CHHhHHHHHHHHHccCcHHHHHHHHHH
Q 021791          176 LYRQMKEDDLCVPNIHTYNILIGMFMALNR----MDMVREIWNHVKGSELGL-DLDSYTMLIHGLCEKQKWKEACQYFVE  250 (307)
Q Consensus       176 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~----~~~a~~~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~a~~~~~~  250 (307)
                      +.........   +...+. ++..+.....    .+.+...+......  .| ...+|..+...|...|++++|...|++
T Consensus       161 ~~~~~~~~~~---~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~  234 (259)
T d1xnfa_         161 LKQHFEKSDK---EQWGWN-IVEFYLGNISEQTLMERLKADATDNTSL--AEHLSETNFYLGKYYLSLGDLDSATALFKL  234 (259)
T ss_dssp             HHHHHHHSCC---CSTHHH-HHHHHTTSSCHHHHHHHHHHHCCSHHHH--HHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             HHHHhhccch---hhhhhh-HHHHHHHHHHHHHHHHHHHHHHHHhhhc--CcccHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence            5555444322   111122 1222211111    12222211111111  11 223566677788888888888888888


Q ss_pred             HHHc
Q 021791          251 MIEK  254 (307)
Q Consensus       251 ~~~~  254 (307)
                      .+..
T Consensus       235 al~~  238 (259)
T d1xnfa_         235 AVAN  238 (259)
T ss_dssp             HHTT
T ss_pred             HHHc
Confidence            8754

>d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Lipoprotein NlpI
species: Escherichia coli [TaxId: 562]

Probab=99.29  E-value=3e-10  Score=85.50  Aligned_cols=221  Identities=8%  Similarity=-0.092  Sum_probs=154.8

Q ss_pred             HHHHHHHHHHHHHHHhcCC-CC--CHHHHHHHHHHHHhcCCchhHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCChHHH
Q 021791           62 EKTIRNAEKVFDEMRVRGI-EP--DVTSFSIVLHVYSRAHKPQLSLDKLNFMKEKGICPTVATYTSVVKCLCSCGRIEDA  138 (307)
Q Consensus        62 ~~~~~~a~~~~~~~~~~~~-~~--~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a  138 (307)
                      ..+.+.++.-+++...... .+  ...+|..+..+|.+.|++++|.+.|++..+.... +..+|..+..+|.+.|++++|
T Consensus        12 ~~~~e~al~~~~e~l~~~~~~~~~~a~~~~~~G~~y~~~g~~~~A~~~~~~al~l~p~-~~~a~~~lg~~~~~~g~~~~A   90 (259)
T d1xnfa_          12 TLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPD-MPEVFNYLGIYLTQAGNFDAA   90 (259)
T ss_dssp             CHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHTTCHHHH
T ss_pred             cHHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHhhccCCC-CHHHHhhhchHHHHHHHHHHh
Confidence            3455666666777765422 21  2346778888999999999999999999987644 788999999999999999999


Q ss_pred             HHHHHHHHhCCCCCCHhhHHHHHHHHhcCCChhHHHHHHHHHhhcCCCCccHHHHHHHHHHHHhcCcHHHHHHHHHHHhh
Q 021791          139 EELLGEMVRNGVSPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDDLCVPNIHTYNILIGMFMALNRMDMVREIWNHVKG  218 (307)
Q Consensus       139 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~  218 (307)
                      ...|+++.+..+. +..++..+..++...|++++|...++...+..  +.+......+...+.+.+..+.+..+......
T Consensus        91 ~~~~~~al~~~p~-~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  167 (259)
T d1xnfa_          91 YEAFDSVLELDPT-YNYAHLNRGIALYYGGRDKLAQDDLLAFYQDD--PNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEK  167 (259)
T ss_dssp             HHHHHHHHHHCTT-CTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHH
T ss_pred             hhhhhHHHHHHhh-hhhhHHHHHHHHHHHhhHHHHHHHHHHHHhhc--cccHHHHHHHHHHHHHhhhHHHHHHHHHHhhc
Confidence            9999999987544 56788889999999999999999999998875  45555555555566667766666666666555


Q ss_pred             CCCCCCHHhHHHHHHHHHccC----cHHHHHHHHHHHHHcCCCCc-HhhHHHHHHHHhhchhHHHHHHHHHHhhhcCC
Q 021791          219 SELGLDLDSYTMLIHGLCEKQ----KWKEACQYFVEMIEKGLLPQ-KVTFETLYRGLIQSDMLRTWRRLKKKLDEESI  291 (307)
Q Consensus       219 ~~~~~~~~~~~~li~~~~~~g----~~~~a~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~  291 (307)
                      ...  +...++ ++..+....    ..+.+...+......  .|+ ..++..+...+...|++++|.+.+++......
T Consensus       168 ~~~--~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p  240 (259)
T d1xnfa_         168 SDK--EQWGWN-IVEFYLGNISEQTLMERLKADATDNTSL--AEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNV  240 (259)
T ss_dssp             SCC--CSTHHH-HHHHHTTSSCHHHHHHHHHHHCCSHHHH--HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCC
T ss_pred             cch--hhhhhh-HHHHHHHHHHHHHHHHHHHHHHHHhhhc--CcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCC
Confidence            422  222222 223332222    222222222222211  122 24567788899999999999999999876543

>d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.13  E-value=3.4e-10  Score=88.74  Aligned_cols=236  Identities=10%  Similarity=-0.007  Sum_probs=172.7

Q ss_pred             hcCchhhHHHHHHHHHhcCCCCcHHHHHHHHHHHHhhCCCCcchhhHHHHHHHHHHHHHHHhcCCCCCHHHHH-HHHHHH
Q 021791           16 KINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPNERFEKTIRNAEKVFDEMRVRGIEPDVTSFS-IVLHVY   94 (307)
Q Consensus        16 ~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~-~ll~~~   94 (307)
                      ..|++++|+..++...+.+ +-+...|..+..++...+        .++++++...++.+.+.. +++...+. .....+
T Consensus        85 ~~~~~~~al~~~~~~l~~~-pk~~~~~~~~~~~~~~~~--------~~~~~~a~~~~~~al~~~-~~~~~~~~~~~~~~~  154 (334)
T d1dcea1          85 SAALVKAELGFLESCLRVN-PKSYGTWHHRCWLLSRLP--------EPNWARELELCARFLEAD-ERNFHCWDYRRFVAA  154 (334)
T ss_dssp             HHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTCS--------SCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHhC-CCcHHHHHHhhHHHHHhc--------cccHHHHHHHHHHHHhhC-chhhhhhhhHHHHHH
Confidence            3455789999999998763 336667777777777744        345789999999998874 33566554 444677


Q ss_pred             HhcCCchhHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHhcCCChhHHH
Q 021791           95 SRAHKPQLSLDKLNFMKEKGICPTVATYTSVVKCLCSCGRIEDAEELLGEMVRNGVSPSAETYNCFFKEYRGRKDANGAM  174 (307)
Q Consensus        95 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~  174 (307)
                      ...+..+.|++.++.+.+.... +...|..+...+.+.|++++|...++......  |+  . ..+...+...+..+++.
T Consensus       155 ~~~~~~~~Al~~~~~~i~~~p~-~~~a~~~l~~~~~~~~~~~~A~~~~~~~~~~~--~~--~-~~~~~~~~~l~~~~~a~  228 (334)
T d1dcea1         155 QAAVAPAEELAFTDSLITRNFS-NYSSWHYRSCLLPQLHPQPDSGPQGRLPENVL--LK--E-LELVQNAFFTDPNDQSA  228 (334)
T ss_dssp             HTCCCHHHHHHHHHTTTTTTCC-CHHHHHHHHHHHHHHSCCCCSSSCCSSCHHHH--HH--H-HHHHHHHHHHCSSCSHH
T ss_pred             HhccccHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhH--HH--H-HHHHHHHHHhcchhHHH
Confidence            7789999999999999888654 78889999999999999988866665444321  11  1 12233345566777788


Q ss_pred             HHHHHHhhcCCCCccHHHHHHHHHHHHhcCcHHHHHHHHHHHhhCCCCCCHHhHHHHHHHHHccCcHHHHHHHHHHHHHc
Q 021791          175 KLYRQMKEDDLCVPNIHTYNILIGMFMALNRMDMVREIWNHVKGSELGLDLDSYTMLIHGLCEKQKWKEACQYFVEMIEK  254 (307)
Q Consensus       175 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~  254 (307)
                      ..+.......  +++...+..+...+...++.++|...+......+.. +...+..+..++...|++++|+..+++.++.
T Consensus       229 ~~~~~~l~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~-~~~~~~~l~~~~~~~~~~~eA~~~~~~ai~l  305 (334)
T d1dcea1         229 WFYHRWLLGR--AEPLFRCELSVEKSTVLQSELESCKELQELEPENKW-CLLTIILLMRALDPLLYEKETLQYFSTLKAV  305 (334)
T ss_dssp             HHHHHHHHSC--CCCSSSCCCCHHHHHHHHHHHHHHHHHHHHCTTCHH-HHHHHHHHHHHHCTGGGHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhC--cchhhHHHHHHHHHHHHhhHHHHHHHHHHHHhhCch-HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence            8888777665  566666777788888899999999999988876422 5667888899999999999999999999875


Q ss_pred             CCCCcH-hhHHHHHHHHhh
Q 021791          255 GLLPQK-VTFETLYRGLIQ  272 (307)
Q Consensus       255 ~~~p~~-~~~~~l~~~~~~  272 (307)
                        .|+. ..|..+...+.-
T Consensus       306 --dP~~~~y~~~L~~~~~~  322 (334)
T d1dcea1         306 --DPMRAAYLDDLRSKFLL  322 (334)
T ss_dssp             --CGGGHHHHHHHHHHHHH
T ss_pred             --CcccHHHHHHHHHHHhH
Confidence              4643 345555544443

>d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Transcription factor MalT domain III
domain: Transcription factor MalT domain III
species: Escherichia coli [TaxId: 562]

Probab=99.11  E-value=1.6e-08  Score=79.22  Aligned_cols=267  Identities=9%  Similarity=0.037  Sum_probs=179.7

Q ss_pred             HHHHHHHHHHHHhcCchhhHHHHHHHHHhcC----CCC-cHHHHHHHHHHHHhhCCCCcchhhHHHHHHHHHHHHHHHhc
Q 021791            4 VKMYTSLIYGWCKINRIDMAERFLGEMIERG----VEP-NVVTYNVLLNGVCRRASLHPNERFEKTIRNAEKVFDEMRVR   78 (307)
Q Consensus         4 ~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~----~~p-~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~   78 (307)
                      ..+++.+...+...|++++|.+.|++..+..    ..+ ....+..+...+..          .+++..+...+......
T Consensus        51 ~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~a~~~~~~al~~  120 (366)
T d1hz4a_          51 IVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEILFA----------QGFLQTAWETQEKAFQL  120 (366)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH----------TTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHH
Confidence            3567888899999999999999999886531    111 12344455555666          55666666666655431


Q ss_pred             ----CCC--C-CHHHHHHHHHHHHhcCCchhHHHHHHHHHHcC----CCCchhhHHHHHHHHHhcCChHHHHHHHHHHHh
Q 021791           79 ----GIE--P-DVTSFSIVLHVYSRAHKPQLSLDKLNFMKEKG----ICPTVATYTSVVKCLCSCGRIEDAEELLGEMVR  147 (307)
Q Consensus        79 ----~~~--~-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~----~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~  147 (307)
                          +..  + ....+..+...+...|+++.+...+.......    ......++......+...++...+...+.+...
T Consensus       121 ~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~  200 (366)
T d1hz4a_         121 INEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLEN  200 (366)
T ss_dssp             HHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred             hHhcccchhhHHHHHHHHHHHHHHHhcchhhhHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence                111  1 22356667788899999999999998887642    222344556667778889999999888877654


Q ss_pred             C----CCCC--CHhhHHHHHHHHhcCCChhHHHHHHHHHhhcCCC--CccHHHHHHHHHHHHhcCcHHHHHHHHHHHhh-
Q 021791          148 N----GVSP--SAETYNCFFKEYRGRKDANGAMKLYRQMKEDDLC--VPNIHTYNILIGMFMALNRMDMVREIWNHVKG-  218 (307)
Q Consensus       148 ~----~~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-  218 (307)
                      .    +..+  ....+..+...+...|++++|...+.........  ......+..+..++...|++++|...++.... 
T Consensus       201 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  280 (366)
T d1hz4a_         201 LLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNEN  280 (366)
T ss_dssp             HHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHhcccCchHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence            2    1111  1234566677788999999999999988765421  22345566788899999999999999988763 


Q ss_pred             ---CCCCCC-HHhHHHHHHHHHccCcHHHHHHHHHHHHHc----CCCC----cHhhHHHHHHHHhhchhHHHHH
Q 021791          219 ---SELGLD-LDSYTMLIHGLCEKQKWKEACQYFVEMIEK----GLLP----QKVTFETLYRGLIQSDMLRTWR  280 (307)
Q Consensus       219 ---~~~~~~-~~~~~~li~~~~~~g~~~~a~~~~~~~~~~----~~~p----~~~~~~~l~~~~~~~g~~~~a~  280 (307)
                         .+..|+ ...+..+..+|...|++++|.+.+++.++.    |...    ....+..++..+...+..+++.
T Consensus       281 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~Al~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~e~e  354 (366)
T d1hz4a_         281 ARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLANRTGFISHFVIEGEAMAQQLRQLIQLNTLPELE  354 (366)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCCCHHHHTTHHHHHHHHHHHHHTTCSCHHH
T ss_pred             HhhcccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhhcCcHHHHHHHHHHHHHHHHHHHhcCCChHHH
Confidence               233333 346777889999999999999999987653    3221    1123444555555555544443

>d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Vesicular transport protein sec17
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.95  E-value=5.2e-08  Score=74.35  Aligned_cols=212  Identities=13%  Similarity=0.048  Sum_probs=142.6

Q ss_pred             HHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCchhHHHHHHHHHHc----CCCC-chhhHHHHHHHHHhcCChH
Q 021791           62 EKTIRNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHKPQLSLDKLNFMKEK----GICP-TVATYTSVVKCLCSCGRIE  136 (307)
Q Consensus        62 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~----~~~~-~~~~~~~ll~~~~~~~~~~  136 (307)
                      ..++++|.++|.+.               ...|...+++++|.+.|.+..+.    +-.+ ...+|..+..+|.+.|+++
T Consensus        30 ~~~~~~Aa~~y~~a---------------a~~y~~~~~~~~A~~~y~kA~~~~~~~~~~~~~a~~~~~~g~~y~~~~~~~   94 (290)
T d1qqea_          30 SYKFEEAADLCVQA---------------ATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSV   94 (290)
T ss_dssp             HHHHHHHHHHHHHH---------------HHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred             cccHHHHHHHHHHH---------------HHHHHHCcCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCCcH
Confidence            56778888777654               45688899999999999887653    2111 2457888999999999999


Q ss_pred             HHHHHHHHHHhCCCC-----CCHhhHHHHHHHHh-cCCChhHHHHHHHHHhhc----CCCCccHHHHHHHHHHHHhcCcH
Q 021791          137 DAEELLGEMVRNGVS-----PSAETYNCFFKEYR-GRKDANGAMKLYRQMKED----DLCVPNIHTYNILIGMFMALNRM  206 (307)
Q Consensus       137 ~a~~~~~~~~~~~~~-----~~~~~~~~l~~~~~-~~~~~~~a~~~~~~~~~~----~~~~~~~~~~~~l~~~~~~~~~~  206 (307)
                      +|.+.+++.......     ....++..+...|. ..|++++|...+.+..+.    +....-..++..+...+...|++
T Consensus        95 ~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~A~~l~~~~~~~~~~~~~~~~la~~~~~~g~y  174 (290)
T d1qqea_          95 NAVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQY  174 (290)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCH
T ss_pred             HHHHHHHHhhHHhhhcccchhHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHhcCchhhhhhHHHHHHHHHHHcChH
Confidence            999999877643111     11345566666664 469999999999887542    11011245678889999999999


Q ss_pred             HHHHHHHHHHhhCCCCCCH------HhHHHHHHHHHccCcHHHHHHHHHHHHHcCCC-Cc---HhhHHHHHHHHhh--ch
Q 021791          207 DMVREIWNHVKGSELGLDL------DSYTMLIHGLCEKQKWKEACQYFVEMIEKGLL-PQ---KVTFETLYRGLIQ--SD  274 (307)
Q Consensus       207 ~~a~~~~~~~~~~~~~~~~------~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~-p~---~~~~~~l~~~~~~--~g  274 (307)
                      ++|.+.++.+.........      ..+...+.++...|+++.|...+++..+.... ++   ......++.++..  .+
T Consensus       175 ~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~A~~~~~~~~~~~~~~~~sre~~~l~~l~~a~~~~d~e  254 (290)
T d1qqea_         175 IEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDSE  254 (290)
T ss_dssp             HHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC---------HHHHHHHHHHHHTTCTT
T ss_pred             HHHHHHHHHHHHhCccchhhhhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCccchHHHHHHHHHHHHHHhcCHH
Confidence            9999999998765322111      12344555677889999999999988755211 12   2244556666654  34


Q ss_pred             hHHHHHHHHHHhhh
Q 021791          275 MLRTWRRLKKKLDE  288 (307)
Q Consensus       275 ~~~~a~~~~~~~~~  288 (307)
                      .+++|..-|+++.+
T Consensus       255 ~~~eai~~y~~~~~  268 (290)
T d1qqea_         255 QLSEHCKEFDNFMR  268 (290)
T ss_dssp             THHHHHHHHTTSSC
T ss_pred             HHHHHHHHHHHHhh
Confidence            57777777765543

>d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Vesicular transport protein sec17
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.88  E-value=1.1e-07  Score=72.49  Aligned_cols=168  Identities=10%  Similarity=0.003  Sum_probs=76.6

Q ss_pred             HHHHHHHHHHHHhcCCchhHHHHHHHHHHc----CC-CCchhhHHHHHHHHHh-cCChHHHHHHHHHHHhC----CCCC-
Q 021791           84 VTSFSIVLHVYSRAHKPQLSLDKLNFMKEK----GI-CPTVATYTSVVKCLCS-CGRIEDAEELLGEMVRN----GVSP-  152 (307)
Q Consensus        84 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~----~~-~~~~~~~~~ll~~~~~-~~~~~~a~~~~~~~~~~----~~~~-  152 (307)
                      ..+|..+..+|.+.|++++|.+.++...+.    |. .....++..+...|.. .|++++|.+.+++..+.    +..+ 
T Consensus        77 a~~~~~~g~~y~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~A~~l~~~~~~~~~  156 (290)
T d1qqea_          77 GNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVAL  156 (290)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred             HHHHHHHHHHHHHhCCcHHHHHHHHHhhHHhhhcccchhHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHhcCchhh
Confidence            455555555555555555555555544322    10 0012333444444432 45666666666554321    1111 


Q ss_pred             CHhhHHHHHHHHhcCCChhHHHHHHHHHhhcCCCCc----c-HHHHHHHHHHHHhcCcHHHHHHHHHHHhhCCCC-CC--
Q 021791          153 SAETYNCFFKEYRGRKDANGAMKLYRQMKEDDLCVP----N-IHTYNILIGMFMALNRMDMVREIWNHVKGSELG-LD--  224 (307)
Q Consensus       153 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~----~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~--  224 (307)
                      ...++..+...+...|++++|...+++........+    . ...+...+..+...|+++.|...++...+.... ++  
T Consensus       157 ~~~~~~~la~~~~~~g~y~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~A~~~~~~~~~~~~~~~~sr  236 (290)
T d1qqea_         157 SNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADSR  236 (290)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC--------
T ss_pred             hhhHHHHHHHHHHHcChHHHHHHHHHHHHHhCccchhhhhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCccchH
Confidence            123455555666666666666666666554321011    0 012223333445566666666666666554211 11  


Q ss_pred             -HHhHHHHHHHHHc--cCcHHHHHHHHHHH
Q 021791          225 -LDSYTMLIHGLCE--KQKWKEACQYFVEM  251 (307)
Q Consensus       225 -~~~~~~li~~~~~--~g~~~~a~~~~~~~  251 (307)
                       ......++.++-.  .+.+++|+..|+++
T Consensus       237 e~~~l~~l~~a~~~~d~e~~~eai~~y~~~  266 (290)
T d1qqea_         237 ESNFLKSLIDAVNEGDSEQLSEHCKEFDNF  266 (290)
T ss_dssp             -HHHHHHHHHHHHTTCTTTHHHHHHHHTTS
T ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence             1233444554433  23466666666543

>d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.86  E-value=2.1e-07  Score=66.11  Aligned_cols=121  Identities=12%  Similarity=0.039  Sum_probs=67.6

Q ss_pred             HHHhcCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHhcCCChhHHHHHHHHHhhcCCCCccHHHHHHHHHHHHhcCcHH
Q 021791          128 CLCSCGRIEDAEELLGEMVRNGVSPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDDLCVPNIHTYNILIGMFMALNRMD  207 (307)
Q Consensus       128 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~  207 (307)
                      .+...|+++.|++.|.++    ..|+..+|..+..+|...|++++|...|++..+.+  +.+...|..+..++.+.|+++
T Consensus        14 ~~~~~~d~~~Al~~~~~i----~~~~~~~~~nlG~~~~~~g~~~~A~~~~~kAl~ld--p~~~~a~~~~g~~~~~~g~~~   87 (192)
T d1hh8a_          14 LAADKKDWKGALDAFSAV----QDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD--KHLAVAYFQRGMLYYQTEKYD   87 (192)
T ss_dssp             HHHHTTCHHHHHHHHHTS----SSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHH
T ss_pred             HHHHCCCHHHHHHHHHhc----CCCCHHHHHHHHHHHHHcCCchhHHHHHHHHHHHh--hhhhhhHHHHHHHHHhhccHH
Confidence            344555555555555443    12344455555555555555555555555555544  444555555555555555555


Q ss_pred             HHHHHHHHHhhCCC--------------CC-CHHhHHHHHHHHHccCcHHHHHHHHHHHHHc
Q 021791          208 MVREIWNHVKGSEL--------------GL-DLDSYTMLIHGLCEKQKWKEACQYFVEMIEK  254 (307)
Q Consensus       208 ~a~~~~~~~~~~~~--------------~~-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~  254 (307)
                      +|.+.|+.......              .+ ...++..+..++.+.|++++|.+.+...++.
T Consensus        88 ~A~~~~~kAl~~~~~n~~~~~~~~~~~~~~~~~e~~~n~a~~~~~~~~~~~A~~~l~~A~~~  149 (192)
T d1hh8a_          88 LAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSM  149 (192)
T ss_dssp             HHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHhCccCchHHHHHhhhhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence            55555555433210              00 1234556667788888888888888877754

>d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.83  E-value=3.4e-07  Score=65.05  Aligned_cols=131  Identities=13%  Similarity=0.006  Sum_probs=87.0

Q ss_pred             HHHHHHHHHHhcCchhhHHHHHHHHHhcCCCCcHHHHHHHHHHHHhhCCCCcchhhHHHHHHHHHHHHHHHhcCCCCCHH
Q 021791            6 MYTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPNERFEKTIRNAEKVFDEMRVRGIEPDVT   85 (307)
Q Consensus         6 ~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~   85 (307)
                      .|+. ...+...|+++.|++.|.++    .+|+..+|..+-.++..          .|++++|++.|++.++.. +.+..
T Consensus         8 l~~~-g~~~~~~~d~~~Al~~~~~i----~~~~~~~~~nlG~~~~~----------~g~~~~A~~~~~kAl~ld-p~~~~   71 (192)
T d1hh8a_           8 LWNE-GVLAADKKDWKGALDAFSAV----QDPHSRICFNIGCMYTI----------LKNMTEAEKAFTRSINRD-KHLAV   71 (192)
T ss_dssp             HHHH-HHHHHHTTCHHHHHHHHHTS----SSCCHHHHHHHHHHHHH----------TTCHHHHHHHHHHHHHHC-TTCHH
T ss_pred             HHHH-HHHHHHCCCHHHHHHHHHhc----CCCCHHHHHHHHHHHHH----------cCCchhHHHHHHHHHHHh-hhhhh
Confidence            3443 55566778888888877654    24566677777777777          677788888888877764 33666


Q ss_pred             HHHHHHHHHHhcCCchhHHHHHHHHHHcCCC------------C---chhhHHHHHHHHHhcCChHHHHHHHHHHHhCCC
Q 021791           86 SFSIVLHVYSRAHKPQLSLDKLNFMKEKGIC------------P---TVATYTSVVKCLCSCGRIEDAEELLGEMVRNGV  150 (307)
Q Consensus        86 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~------------~---~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~  150 (307)
                      .|..+..++.+.|++++|.+.|++.......            .   ...++..+..++.+.|++++|.+.++.......
T Consensus        72 a~~~~g~~~~~~g~~~~A~~~~~kAl~~~~~n~~~~~~~~~~~~~~~~~e~~~n~a~~~~~~~~~~~A~~~l~~A~~~~~  151 (192)
T d1hh8a_          72 AYFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKS  151 (192)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCC
T ss_pred             hHHHHHHHHHhhccHHHHHHHHHHHHHhCccCchHHHHHhhhhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC
Confidence            7777777888888888888777776543110            0   123445566667777777777777777666544


Q ss_pred             CC
Q 021791          151 SP  152 (307)
Q Consensus       151 ~~  152 (307)
                      .+
T Consensus       152 ~~  153 (192)
T d1hh8a_         152 EP  153 (192)
T ss_dssp             SG
T ss_pred             Cc
Confidence            43

>d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.82  E-value=1.9e-07  Score=60.56  Aligned_cols=87  Identities=16%  Similarity=0.105  Sum_probs=35.2

Q ss_pred             HHhcCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHhcCCChhHHHHHHHHHhhcCCCCccHHHHHHHHHHHHhcCcHHH
Q 021791          129 LCSCGRIEDAEELLGEMVRNGVSPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDDLCVPNIHTYNILIGMFMALNRMDM  208 (307)
Q Consensus       129 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  208 (307)
                      +.+.|++++|+..|++.++..+. +...|..+..+|...|++++|+..+....+.+  +.+...|..+..++...|++++
T Consensus        13 ~~~~g~~~eAi~~~~~al~~~p~-~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~~g~~~~~~~~~~~   89 (117)
T d1elwa_          13 ALSVGNIDDALQCYSEAIKLDPH-NHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLK--PDWGKGYSRKAAALEFLNRFEE   89 (117)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHH
T ss_pred             HHHcCCHHHHHHHHHHHHhcCCc-chhhhhcccccccccccccccchhhhhHHHhc--cchhhHHHHHHHHHHHccCHHH
Confidence            33444444444444444433222 33334444444444444444444444444333  3333344444444444444444


Q ss_pred             HHHHHHHHhh
Q 021791          209 VREIWNHVKG  218 (307)
Q Consensus       209 a~~~~~~~~~  218 (307)
                      |+..++...+
T Consensus        90 A~~~~~~a~~   99 (117)
T d1elwa_          90 AKRTYEEGLK   99 (117)
T ss_dssp             HHHHHHHHHT
T ss_pred             HHHHHHHHHH
Confidence            4444444443

>d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Protein phosphatase 5
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.81  E-value=2.2e-07  Score=63.90  Aligned_cols=88  Identities=17%  Similarity=0.045  Sum_probs=39.5

Q ss_pred             HHHhcCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHhcCCChhHHHHHHHHHhhcCCCCccHHHHHHHHHHHHhcCcHH
Q 021791          128 CLCSCGRIEDAEELLGEMVRNGVSPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDDLCVPNIHTYNILIGMFMALNRMD  207 (307)
Q Consensus       128 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~  207 (307)
                      .|.+.|++++|+..|++..+.+.. +...|..+..+|...|++++|...|++..+..  +.+..+|..+..++...|+++
T Consensus        19 ~~~~~~~y~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~~--p~~~~a~~~~g~~~~~~g~~~   95 (159)
T d1a17a_          19 DYFKAKDYENAIKFYSQAIELNPS-NAIYYGNRSLAYLRTECYGYALGDATRAIELD--KKYIKGYYRRAASNMALGKFR   95 (159)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHH
T ss_pred             HHHHcCCHHHHHHHhhhccccchh-hhhhhhhhHHHHHhccccchHHHHHHHHHHHc--ccchHHHHHHHHHHHHcCCHH
Confidence            344444444444444444443322 34444444444444444444444444444433  333344444444444444444


Q ss_pred             HHHHHHHHHhh
Q 021791          208 MVREIWNHVKG  218 (307)
Q Consensus       208 ~a~~~~~~~~~  218 (307)
                      +|...+++...
T Consensus        96 eA~~~~~~a~~  106 (159)
T d1a17a_          96 AALRDYETVVK  106 (159)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHH
Confidence            44444444444

>d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.79  E-value=3e-07  Score=59.53  Aligned_cols=103  Identities=11%  Similarity=-0.076  Sum_probs=85.4

Q ss_pred             HHHHHHhcCCchhHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHhcCCC
Q 021791           90 VLHVYSRAHKPQLSLDKLNFMKEKGICPTVATYTSVVKCLCSCGRIEDAEELLGEMVRNGVSPSAETYNCFFKEYRGRKD  169 (307)
Q Consensus        90 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~  169 (307)
                      -...+.+.|++++|+..|....+.... +...|..+..+|...|++++|+..++.....++. +...|..+..++...|+
T Consensus         9 ~g~~~~~~g~~~eAi~~~~~al~~~p~-~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~~g~~~~~~~~   86 (117)
T d1elwa_           9 KGNKALSVGNIDDALQCYSEAIKLDPH-NHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPD-WGKGYSRKAAALEFLNR   86 (117)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHhcCCc-chhhhhcccccccccccccccchhhhhHHHhccc-hhhHHHHHHHHHHHccC
Confidence            456778899999999999999887644 7888999999999999999999999999987654 78889999999999999


Q ss_pred             hhHHHHHHHHHhhcCCCCccHHHHHHH
Q 021791          170 ANGAMKLYRQMKEDDLCVPNIHTYNIL  196 (307)
Q Consensus       170 ~~~a~~~~~~~~~~~~~~~~~~~~~~l  196 (307)
                      +++|+..|+...+..  +-+...+..+
T Consensus        87 ~~~A~~~~~~a~~~~--p~~~~~~~~l  111 (117)
T d1elwa_          87 FEEAKRTYEEGLKHE--ANNPQLKEGL  111 (117)
T ss_dssp             HHHHHHHHHHHHTTC--TTCHHHHHHH
T ss_pred             HHHHHHHHHHHHHhC--CCCHHHHHHH
Confidence            999999999999875  3444444443

>d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Protein phosphatase 5
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.75  E-value=3.9e-07  Score=62.64  Aligned_cols=104  Identities=8%  Similarity=-0.091  Sum_probs=88.2

Q ss_pred             HHHHHHhcCCchhHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHhcCCC
Q 021791           90 VLHVYSRAHKPQLSLDKLNFMKEKGICPTVATYTSVVKCLCSCGRIEDAEELLGEMVRNGVSPSAETYNCFFKEYRGRKD  169 (307)
Q Consensus        90 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~  169 (307)
                      ....|.+.|++++|...|++..+.... +...|..+..+|...|++++|...|++..+.... +..+|..+..++...|+
T Consensus        16 ~gn~~~~~~~y~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~~p~-~~~a~~~~g~~~~~~g~   93 (159)
T d1a17a_          16 QANDYFKAKDYENAIKFYSQAIELNPS-NAIYYGNRSLAYLRTECYGYALGDATRAIELDKK-YIKGYYRRAASNMALGK   93 (159)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHcCCHHHHHHHhhhccccchh-hhhhhhhhHHHHHhccccchHHHHHHHHHHHccc-chHHHHHHHHHHHHcCC
Confidence            345678999999999999999998644 8889999999999999999999999999987644 77899999999999999


Q ss_pred             hhHHHHHHHHHhhcCCCCccHHHHHHHH
Q 021791          170 ANGAMKLYRQMKEDDLCVPNIHTYNILI  197 (307)
Q Consensus       170 ~~~a~~~~~~~~~~~~~~~~~~~~~~l~  197 (307)
                      +++|...+++.....  +-+...+..+.
T Consensus        94 ~~eA~~~~~~a~~~~--p~~~~~~~~l~  119 (159)
T d1a17a_          94 FRAALRDYETVVKVK--PHDKDAKMKYQ  119 (159)
T ss_dssp             HHHHHHHHHHHHHHS--TTCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcC--CCCHHHHHHHH
Confidence            999999999999875  44455544443

>d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: STIP1 homology and U box-containing protein 1, STUB1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.74  E-value=8.8e-08  Score=68.68  Aligned_cols=100  Identities=13%  Similarity=0.046  Sum_probs=88.3

Q ss_pred             CchhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHhcCCChhHHHHHHHHHhhcCCCCccHHHHHHH
Q 021791          117 PTVATYTSVVKCLCSCGRIEDAEELLGEMVRNGVSPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDDLCVPNIHTYNIL  196 (307)
Q Consensus       117 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l  196 (307)
                      |+...+....+.|.+.|++++|+..|++.....+. +...|..+..+|.+.|++++|...|....+..  +-+..+|..+
T Consensus         2 ~~a~~l~~~Gn~~~~~g~~~~Ai~~~~kal~~~p~-~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~l~--p~~~~a~~~l   78 (201)
T d2c2la1           2 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPL-VAVYYTNRALCYLKMQQPEQALADCRRALELD--GQSVKAHFFL   78 (201)
T ss_dssp             CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSC--TTCHHHHHHH
T ss_pred             hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHhHHHHHhhhhhhhhhhHHHHHHHHhC--CCcHHHHHHH
Confidence            67778888899999999999999999998887654 78889999999999999999999999998875  5678889999


Q ss_pred             HHHHHhcCcHHHHHHHHHHHhhC
Q 021791          197 IGMFMALNRMDMVREIWNHVKGS  219 (307)
Q Consensus       197 ~~~~~~~~~~~~a~~~~~~~~~~  219 (307)
                      ..+|...|++++|...|+.+...
T Consensus        79 g~~~~~l~~~~~A~~~~~~al~l  101 (201)
T d2c2la1          79 GQCQLEMESYDEAIANLQRAYSL  101 (201)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHCCCHHHHHHHHHHHHHh
Confidence            99999999999999999987753

>d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: STIP1 homology and U box-containing protein 1, STUB1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.72  E-value=2e-07  Score=66.75  Aligned_cols=101  Identities=9%  Similarity=-0.074  Sum_probs=90.3

Q ss_pred             CCCHHHHHHHHHHHHhcCCchhHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHhhHHHH
Q 021791           81 EPDVTSFSIVLHVYSRAHKPQLSLDKLNFMKEKGICPTVATYTSVVKCLCSCGRIEDAEELLGEMVRNGVSPSAETYNCF  160 (307)
Q Consensus        81 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l  160 (307)
                      .|+...+......+.+.|++++|+..|.+..+.... +...|..+..+|.+.|++++|+..|++..+..+. +..+|..+
T Consensus         1 ~~~a~~l~~~Gn~~~~~g~~~~Ai~~~~kal~~~p~-~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~l~p~-~~~a~~~l   78 (201)
T d2c2la1           1 SPSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPL-VAVYYTNRALCYLKMQQPEQALADCRRALELDGQ-SVKAHFFL   78 (201)
T ss_dssp             CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTT-CHHHHHHH
T ss_pred             ChhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHhHHHHHhhhhhhhhhhHHHHHHHHhCCC-cHHHHHHH
Confidence            377888888999999999999999999999888643 7888999999999999999999999999886543 67889999


Q ss_pred             HHHHhcCCChhHHHHHHHHHhhc
Q 021791          161 FKEYRGRKDANGAMKLYRQMKED  183 (307)
Q Consensus       161 ~~~~~~~~~~~~a~~~~~~~~~~  183 (307)
                      ..+|...|++++|...|++....
T Consensus        79 g~~~~~l~~~~~A~~~~~~al~l  101 (201)
T d2c2la1          79 GQCQLEMESYDEAIANLQRAYSL  101 (201)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHCCCHHHHHHHHHHHHHh
Confidence            99999999999999999988764

>d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Trypanosoma brucei [TaxId: 5691]

Probab=98.60  E-value=3.9e-07  Score=58.48  Aligned_cols=86  Identities=7%  Similarity=-0.004  Sum_probs=37.3

Q ss_pred             HHHHhcCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHhcCCChhHHHHHHHHHhhcCCCCccHHHHHHHHHHHHhcCcH
Q 021791          127 KCLCSCGRIEDAEELLGEMVRNGVSPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDDLCVPNIHTYNILIGMFMALNRM  206 (307)
Q Consensus       127 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~  206 (307)
                      ..+.+.|++++|...|++.....+. +...|..+..++.+.|++++|...+++..+..  +.+..++..+...|...|++
T Consensus        24 ~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~--p~~~~a~~~la~~y~~~g~~  100 (112)
T d1hxia_          24 LSMLKLANLAEAALAFEAVCQKEPE-REEAWRSLGLTQAENEKDGLAIIALNHARMLD--PKDIAVHAALAVSHTNEHNA  100 (112)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHhhhHHHHHHHhhhcccccc-cchhhhhhhhhhhhhhhHHHhhcccccccccc--cccccchHHHHHHHHHCCCH
Confidence            3344444444444444444443222 34444444444444444444444444444433  33344444444444444444


Q ss_pred             HHHHHHHHH
Q 021791          207 DMVREIWNH  215 (307)
Q Consensus       207 ~~a~~~~~~  215 (307)
                      ++|.+.+++
T Consensus       101 ~~A~~~l~~  109 (112)
T d1hxia_         101 NAALASLRA  109 (112)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            444444443

>d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Trypanosoma brucei [TaxId: 5691]

Probab=98.58  E-value=4.1e-07  Score=58.38  Aligned_cols=87  Identities=9%  Similarity=-0.105  Sum_probs=46.4

Q ss_pred             HHHHHhcCcHHHHHHHHHHHhhCCCCCCHHhHHHHHHHHHccCcHHHHHHHHHHHHHcCCCCcHhhHHHHHHHHhhchhH
Q 021791          197 IGMFMALNRMDMVREIWNHVKGSELGLDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQSDML  276 (307)
Q Consensus       197 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~  276 (307)
                      ...+.+.|++++|...++........ +...|..+..++.+.|++++|+..|++.++.. +-+...+..+...|...|+.
T Consensus        23 g~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~la~~y~~~g~~  100 (112)
T d1hxia_          23 GLSMLKLANLAEAALAFEAVCQKEPE-REEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVSHTNEHNA  100 (112)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhhhHHHHHHHhhhcccccc-cchhhhhhhhhhhhhhhHHHhhcccccccccc-cccccchHHHHHHHHHCCCH
Confidence            34445555555555555555554322 45555555555555555555555555555442 22344555555555555555


Q ss_pred             HHHHHHHHH
Q 021791          277 RTWRRLKKK  285 (307)
Q Consensus       277 ~~a~~~~~~  285 (307)
                      ++|.+.+++
T Consensus       101 ~~A~~~l~~  109 (112)
T d1hxia_         101 NAALASLRA  109 (112)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            555555554

>d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein C (HcpC)
species: Helicobacter pylori [TaxId: 210]

Probab=98.53  E-value=6.8e-05  Score=55.66  Aligned_cols=225  Identities=11%  Similarity=-0.030  Sum_probs=154.0

Q ss_pred             HHHHHHHHHHHHhhCCCCcchhhHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHh----cCCchhHHHHHHHHHHcC
Q 021791           39 VVTYNVLLNGVCRRASLHPNERFEKTIRNAEKVFDEMRVRGIEPDVTSFSIVLHVYSR----AHKPQLSLDKLNFMKEKG  114 (307)
Q Consensus        39 ~~~~~~ll~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~  114 (307)
                      +..+..|-..+..          .+++++|++.|++..+.|   +...+..|...|..    ..+...+...+......+
T Consensus         2 p~~~~~lG~~~~~----------~~d~~~A~~~~~kAa~~g---~~~A~~~Lg~~y~~G~~~~~d~~~a~~~~~~a~~~~   68 (265)
T d1ouva_           2 PKELVGLGAKSYK----------EKDFTQAKKYFEKACDLK---ENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN   68 (265)
T ss_dssp             HHHHHHHHHHHHH----------TTCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHH----------CCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCcchhHHHHHHhhccccccc
Confidence            3455555555666          778999999999998887   56666667777765    557888999998888775


Q ss_pred             CCCchhhHHHHHHHHHh----cCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHh----cCCChhHHHHHHHHHhhcCCC
Q 021791          115 ICPTVATYTSVVKCLCS----CGRIEDAEELLGEMVRNGVSPSAETYNCFFKEYR----GRKDANGAMKLYRQMKEDDLC  186 (307)
Q Consensus       115 ~~~~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~----~~~~~~~a~~~~~~~~~~~~~  186 (307)
                         +......+...+..    .++.+.|...++.....|..   .....+...+.    .......+...+......   
T Consensus        69 ---~~~a~~~l~~~~~~~~~~~~~~~~a~~~~~~a~~~g~~---~a~~~l~~~~~~~~~~~~~~~~a~~~~~~~~~~---  139 (265)
T d1ouva_          69 ---YSNGCHLLGNLYYSGQGVSQNTNKALQYYSKACDLKYA---EGCASLGGIYHDGKVVTRDFKKAVEYFTKACDL---  139 (265)
T ss_dssp             ---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCH---HHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHT---
T ss_pred             ---ccchhhccccccccccccchhhHHHHHHHhhhhhhhhh---hHHHhhcccccCCCcccchhHHHHHHhhhhhcc---
Confidence               33444445444443    45788899999988876542   22233333332    234556667777666553   


Q ss_pred             CccHHHHHHHHHHHHh----cCcHHHHHHHHHHHhhCCCCCCHHhHHHHHHHHHc----cCcHHHHHHHHHHHHHcCCCC
Q 021791          187 VPNIHTYNILIGMFMA----LNRMDMVREIWNHVKGSELGLDLDSYTMLIHGLCE----KQKWKEACQYFVEMIEKGLLP  258 (307)
Q Consensus       187 ~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~a~~~~~~~~~~~~~p  258 (307)
                       .+...+..|...+..    ..+...+...++...+.|   +..+...+...|..    ..++++|+..|.+..+.|   
T Consensus       140 -~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~a~~~g---~~~A~~~lg~~y~~g~~~~~d~~~A~~~~~~aa~~g---  212 (265)
T d1ouva_         140 -NDGDGCTILGSLYDAGRGTPKDLKKALASYDKACDLK---DSPGCFNAGNMYHHGEGATKNFKEALARYSKACELE---  212 (265)
T ss_dssp             -TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTT---
T ss_pred             -cccchhhhhhhhhccCCCcccccccchhhhhcccccc---ccccccchhhhcccCcccccchhhhhhhHhhhhccc---
Confidence             456677778777775    456778888888877765   66666666666654    568999999999999887   


Q ss_pred             cHhhHHHHHHHHhh----chhHHHHHHHHHHhhhcCCC
Q 021791          259 QKVTFETLYRGLIQ----SDMLRTWRRLKKKLDEESIT  292 (307)
Q Consensus       259 ~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~~  292 (307)
                      ++..+..|...|.+    ..+.++|.+++++..+.|-.
T Consensus       213 ~~~a~~~LG~~y~~G~g~~~n~~~A~~~~~kAa~~g~~  250 (265)
T d1ouva_         213 NGGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKLGAK  250 (265)
T ss_dssp             CHHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHTCH
T ss_pred             CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHCcCH
Confidence            34455556666654    34788899999888776643

>d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein C (HcpC)
species: Helicobacter pylori [TaxId: 210]

Probab=98.52  E-value=7.1e-05  Score=55.56  Aligned_cols=230  Identities=11%  Similarity=0.024  Sum_probs=159.0

Q ss_pred             cHHHHHHHHHHHHhcCchhhHHHHHHHHHhcCCCCcHHHHHHHHHHHHhhCCCCcchhhHHHHHHHHHHHHHHHhcCCCC
Q 021791            3 NVKMYTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPNERFEKTIRNAEKVFDEMRVRGIEP   82 (307)
Q Consensus         3 ~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~   82 (307)
                      |+..+..|...+.+.|++++|++.|++..+.|   +...+..|-..|..-...      ..+...+...+......+   
T Consensus         1 ~p~~~~~lG~~~~~~~d~~~A~~~~~kAa~~g---~~~A~~~Lg~~y~~G~~~------~~d~~~a~~~~~~a~~~~---   68 (265)
T d1ouva_           1 DPKELVGLGAKSYKEKDFTQAKKYFEKACDLK---ENSGCFNLGVLYYQGQGV------EKNLKKAASFYAKACDLN---   68 (265)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSS------CCCHHHHHHHHHHHHHTT---
T ss_pred             CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCc------chhHHHHHHhhccccccc---
Confidence            56677888888999999999999999998876   445555555555542111      456788999998888776   


Q ss_pred             CHHHHHHHHHHHHh----cCCchhHHHHHHHHHHcCCCCchhhHHHHHHHHHh----cCChHHHHHHHHHHHhCCCCCCH
Q 021791           83 DVTSFSIVLHVYSR----AHKPQLSLDKLNFMKEKGICPTVATYTSVVKCLCS----CGRIEDAEELLGEMVRNGVSPSA  154 (307)
Q Consensus        83 ~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~  154 (307)
                      +......+...+..    ..+.+.+...++...+.|..   .....+...+..    ......+...+......   .+.
T Consensus        69 ~~~a~~~l~~~~~~~~~~~~~~~~a~~~~~~a~~~g~~---~a~~~l~~~~~~~~~~~~~~~~a~~~~~~~~~~---~~~  142 (265)
T d1ouva_          69 YSNGCHLLGNLYYSGQGVSQNTNKALQYYSKACDLKYA---EGCASLGGIYHDGKVVTRDFKKAVEYFTKACDL---NDG  142 (265)
T ss_dssp             CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCH---HHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHT---TCH
T ss_pred             ccchhhccccccccccccchhhHHHHHHHhhhhhhhhh---hHHHhhcccccCCCcccchhHHHHHHhhhhhcc---ccc
Confidence            33444445444443    45667888999888887642   233333333332    34566777777776654   366


Q ss_pred             hhHHHHHHHHhc----CCChhHHHHHHHHHhhcCCCCccHHHHHHHHHHHHh----cCcHHHHHHHHHHHhhCCCCCCHH
Q 021791          155 ETYNCFFKEYRG----RKDANGAMKLYRQMKEDDLCVPNIHTYNILIGMFMA----LNRMDMVREIWNHVKGSELGLDLD  226 (307)
Q Consensus       155 ~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~  226 (307)
                      ..+..+...+..    ..+...+...+....+.+    +......+...+..    ..+.+.|...|....+.|   ++.
T Consensus       143 ~~~~~L~~~~~~~~~~~~~~~~~~~~~~~a~~~g----~~~A~~~lg~~y~~g~~~~~d~~~A~~~~~~aa~~g---~~~  215 (265)
T d1ouva_         143 DGCTILGSLYDAGRGTPKDLKKALASYDKACDLK----DSPGCFNAGNMYHHGEGATKNFKEALARYSKACELE---NGG  215 (265)
T ss_dssp             HHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT----CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTT---CHH
T ss_pred             chhhhhhhhhccCCCcccccccchhhhhcccccc----ccccccchhhhcccCcccccchhhhhhhHhhhhccc---CHH
Confidence            677777777765    456667777777777654    45566666666665    568999999999998876   566


Q ss_pred             hHHHHHHHHHc----cCcHHHHHHHHHHHHHcCCC
Q 021791          227 SYTMLIHGLCE----KQKWKEACQYFVEMIEKGLL  257 (307)
Q Consensus       227 ~~~~li~~~~~----~g~~~~a~~~~~~~~~~~~~  257 (307)
                      .+..|...|..    ..+.++|.+.|++..+.|..
T Consensus       216 a~~~LG~~y~~G~g~~~n~~~A~~~~~kAa~~g~~  250 (265)
T d1ouva_         216 GCFNLGAMQYNGEGVTRNEKQAIENFKKGCKLGAK  250 (265)
T ss_dssp             HHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHTCH
T ss_pred             HHHHHHHHHHcCCCCccCHHHHHHHHHHHHHCcCH
Confidence            77777777764    34788999999999888743

>d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.51  E-value=1.5e-06  Score=56.47  Aligned_cols=97  Identities=10%  Similarity=0.048  Sum_probs=47.0

Q ss_pred             HHHHHHHhcCchhhHHHHHHHHHhcCCCCcHHHHHHHHHHHHhhCCCCcchhhHHHHHHHHHHHHHHHhcCCCCC-HHHH
Q 021791            9 SLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPNERFEKTIRNAEKVFDEMRVRGIEPD-VTSF   87 (307)
Q Consensus         9 ~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~   87 (307)
                      .++..+...+++++|++.|+.....+ +.+..++..+..++.+.++       .+++++|+.+|+++...+..|+ ..++
T Consensus         4 ~l~n~~~~~~~l~~Ae~~Y~~aL~~~-p~~~~~~~n~a~~L~~s~~-------~~d~~~Ai~~l~~~l~~~~~~~~~~~~   75 (122)
T d1nzna_           4 AVLNELVSVEDLLKFEKKFQSEKAAG-SVSKSTQFEYAWCLVRTRY-------NDDIRKGIVLLEELLPKGSKEEQRDYV   75 (122)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHS-CCCHHHHHHHHHHHTTSSS-------HHHHHHHHHHHHHHTTTSCHHHHHHHH
T ss_pred             HHHHHhcCHHHHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHhcc-------hHHHHHHHHHHHHHHhccCCchHHHHH
Confidence            34445555555555555555555542 2244444444444443222       4445555555555554422222 1244


Q ss_pred             HHHHHHHHhcCCchhHHHHHHHHHHc
Q 021791           88 SIVLHVYSRAHKPQLSLDKLNFMKEK  113 (307)
Q Consensus        88 ~~ll~~~~~~~~~~~a~~~~~~~~~~  113 (307)
                      ..+..+|.+.|++++|.+.|+++.+.
T Consensus        76 ~~Lg~~y~~~g~~~~A~~~~~~aL~~  101 (122)
T d1nzna_          76 FYLAVGNYRLKEYEKALKYVRGLLQT  101 (122)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence            44555555555555555555555554

>d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.48  E-value=7.8e-07  Score=57.83  Aligned_cols=26  Identities=8%  Similarity=-0.160  Sum_probs=11.5

Q ss_pred             HHHHHHHHHhcCcHHHHHHHHHHHhh
Q 021791          193 YNILIGMFMALNRMDMVREIWNHVKG  218 (307)
Q Consensus       193 ~~~l~~~~~~~~~~~~a~~~~~~~~~  218 (307)
                      +..+..+|.+.|++++|++.|+.+.+
T Consensus        75 ~~~Lg~~y~~~g~~~~A~~~~~~aL~  100 (122)
T d1nzna_          75 VFYLAVGNYRLKEYEKALKYVRGLLQ  100 (122)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence            33444444444444444444444444

>d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP52 (FKBP4), C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.43  E-value=1e-05  Score=55.86  Aligned_cols=62  Identities=10%  Similarity=-0.019  Sum_probs=32.3

Q ss_pred             HHHHHHHHHHhcCcHHHHHHHHHHHhhCCCCCCHHhHHHHHHHHHccCcHHHHHHHHHHHHHc
Q 021791          192 TYNILIGMFMALNRMDMVREIWNHVKGSELGLDLDSYTMLIHGLCEKQKWKEACQYFVEMIEK  254 (307)
Q Consensus       192 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~  254 (307)
                      +|+.+..+|.+.|++++|+..++.....+. -+..+|..+..+|...|++++|+..|++.++.
T Consensus        64 ~~~nla~~y~k~~~~~~A~~~~~~al~~~p-~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l  125 (170)
T d1p5qa1          64 SHLNLAMCHLKLQAFSAAIESCNKALELDS-NNEKGLSRRGEAHLAVNDFELARADFQKVLQL  125 (170)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhhhhcccccchhhhhhhccc-cchhhhHHHHHHHHHhhhHHHHHHHHHHHHHh
Confidence            344455555555555555555555554431 14455555555555555555555555555543

>d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP52 (FKBP4), C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.41  E-value=8.8e-06  Score=56.27  Aligned_cols=124  Identities=11%  Similarity=-0.042  Sum_probs=69.1

Q ss_pred             HHHHHHHHHhcCCchhHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHhc
Q 021791           87 FSIVLHVYSRAHKPQLSLDKLNFMKEKGICPTVATYTSVVKCLCSCGRIEDAEELLGEMVRNGVSPSAETYNCFFKEYRG  166 (307)
Q Consensus        87 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~  166 (307)
                      +......+.+.|++++|+..|.+..+.-......              .+.-......+       ...+|+.+..+|.+
T Consensus        16 l~~~G~~~~~~~~~~~Ai~~y~~al~~~~~~~~~--------------~~~~~~~~~~~-------~~~~~~nla~~y~k   74 (170)
T d1p5qa1          16 VKERGTVYFKEGKYKQALLQYKKIVSWLEYESSF--------------SNEEAQKAQAL-------RLASHLNLAMCHLK   74 (170)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCC--------------CSHHHHHHHHH-------HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcccc--------------chHHHhhhchh-------HHHHHHHHHHHHHh
Confidence            3445556777788888888887776541110000              00000000000       11245556666777


Q ss_pred             CCChhHHHHHHHHHhhcCCCCccHHHHHHHHHHHHhcCcHHHHHHHHHHHhhCCCCCCHHhHHHHHHH
Q 021791          167 RKDANGAMKLYRQMKEDDLCVPNIHTYNILIGMFMALNRMDMVREIWNHVKGSELGLDLDSYTMLIHG  234 (307)
Q Consensus       167 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~  234 (307)
                      .|++++|+..++.....+  |.++.++..+..++...|++++|...|+.+.+.... +......+-.+
T Consensus        75 ~~~~~~A~~~~~~al~~~--p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~P~-n~~~~~~l~~~  139 (170)
T d1p5qa1          75 LQAFSAAIESCNKALELD--SNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPN-NKAAKTQLAVC  139 (170)
T ss_dssp             TTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSS-CHHHHHHHHHH
T ss_pred             hhhcccccchhhhhhhcc--ccchhhhHHHHHHHHHhhhHHHHHHHHHHHHHhCCC-CHHHHHHHHHH
Confidence            777777777777777664  456667777777777777777777777777665321 44444444333

>d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Putative 70 kda peptidylprolyl isomerase PFL2275c
species: Plasmodium falciparum [TaxId: 5833]

Probab=98.26  E-value=2.7e-05  Score=52.70  Aligned_cols=63  Identities=8%  Similarity=-0.140  Sum_probs=37.4

Q ss_pred             HHHHHHHHHHHhcCcHHHHHHHHHHHhhCCCCCCHHhHHHHHHHHHccCcHHHHHHHHHHHHHc
Q 021791          191 HTYNILIGMFMALNRMDMVREIWNHVKGSELGLDLDSYTMLIHGLCEKQKWKEACQYFVEMIEK  254 (307)
Q Consensus       191 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~  254 (307)
                      .+|+.+..+|.+.|++++|++.++.+...+ +.+..+|..+..++...|++++|+..|++.++.
T Consensus        68 ~~~~Nla~~~~~l~~~~~Al~~~~~al~~~-p~~~ka~~~~g~~~~~lg~~~~A~~~~~~al~l  130 (153)
T d2fbna1          68 SCNLNLATCYNKNKDYPKAIDHASKVLKID-KNNVKALYKLGVANMYFGFLEEAKENLYKAASL  130 (153)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred             HHHhhHHHHHHHhcccchhhhhhhcccccc-chhhhhhHHhHHHHHHcCCHHHHHHHHHHHHHh
Confidence            345555666666666666666666655543 225556666666666666666666666666554

>d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.25  E-value=1.5e-05  Score=52.19  Aligned_cols=95  Identities=14%  Similarity=0.138  Sum_probs=55.0

Q ss_pred             HHHHHHHHhcCCchhHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCC-C-----HhhHHHHH
Q 021791           88 SIVLHVYSRAHKPQLSLDKLNFMKEKGICPTVATYTSVVKCLCSCGRIEDAEELLGEMVRNGVSP-S-----AETYNCFF  161 (307)
Q Consensus        88 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~-~-----~~~~~~l~  161 (307)
                      ..+...+.+.|++++|+..|.+.++.+.. +..++..+..+|.+.|++++|...++++++..... .     ..+|..+.
T Consensus         8 k~~G~~~~~~~~y~~Ai~~y~~al~~~p~-~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~a~~~~~lg   86 (128)
T d1elra_           8 KELGNDAYKKKDFDTALKHYDKAKELDPT-NMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARIG   86 (128)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHhCcc-cHHHHHhHHHHHHHcCchHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHH
Confidence            34555666667777777777666666432 56666666666667777777766666655431110 0     12444455


Q ss_pred             HHHhcCCChhHHHHHHHHHhhc
Q 021791          162 KEYRGRKDANGAMKLYRQMKED  183 (307)
Q Consensus       162 ~~~~~~~~~~~a~~~~~~~~~~  183 (307)
                      ..+...+++++|...|......
T Consensus        87 ~~~~~~~~~~~A~~~~~kal~~  108 (128)
T d1elra_          87 NSYFKEEKYKDAIHFYNKSLAE  108 (128)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHhCCHHHHHHHHHHHHhc
Confidence            5555666666666666555443

>d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.24  E-value=1.3e-05  Score=52.40  Aligned_cols=93  Identities=16%  Similarity=0.265  Sum_probs=47.9

Q ss_pred             HHHHHhcCCChhHHHHHHHHHhhcCCCCccHHHHHHHHHHHHhcCcHHHHHHHHHHHhhCCCC-CC-----HHhHHHHHH
Q 021791          160 FFKEYRGRKDANGAMKLYRQMKEDDLCVPNIHTYNILIGMFMALNRMDMVREIWNHVKGSELG-LD-----LDSYTMLIH  233 (307)
Q Consensus       160 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~-----~~~~~~li~  233 (307)
                      +...+.+.|++++|+..|.+..+.+  +.+..++..+..+|.+.|++++|...++.+.+.... +.     ..+|..+..
T Consensus        10 ~G~~~~~~~~y~~Ai~~y~~al~~~--p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~a~~~~~lg~   87 (128)
T d1elra_          10 LGNDAYKKKDFDTALKHYDKAKELD--PTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARIGN   87 (128)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHhC--cccHHHHHhHHHHHHHcCchHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHHH
Confidence            3444555555555555555555543  344555555555555555555555555554432100 00     123444555


Q ss_pred             HHHccCcHHHHHHHHHHHHHc
Q 021791          234 GLCEKQKWKEACQYFVEMIEK  254 (307)
Q Consensus       234 ~~~~~g~~~~a~~~~~~~~~~  254 (307)
                      .+...+++++|+..|++.+..
T Consensus        88 ~~~~~~~~~~A~~~~~kal~~  108 (128)
T d1elra_          88 SYFKEEKYKDAIHFYNKSLAE  108 (128)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHhCCHHHHHHHHHHHHhc
Confidence            555666666666666665543

>d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Putative 70 kda peptidylprolyl isomerase PFL2275c
species: Plasmodium falciparum [TaxId: 5833]

Probab=98.22  E-value=3.1e-05  Score=52.37  Aligned_cols=64  Identities=14%  Similarity=0.032  Sum_probs=45.3

Q ss_pred             hhHHHHHHHHhcCCChhHHHHHHHHHhhcCCCCccHHHHHHHHHHHHhcCcHHHHHHHHHHHhhCC
Q 021791          155 ETYNCFFKEYRGRKDANGAMKLYRQMKEDDLCVPNIHTYNILIGMFMALNRMDMVREIWNHVKGSE  220 (307)
Q Consensus       155 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~  220 (307)
                      .+|+.+..+|.+.|++++|+..+......+  +.+..+|..+..++...|++++|...|+...+..
T Consensus        68 ~~~~Nla~~~~~l~~~~~Al~~~~~al~~~--p~~~ka~~~~g~~~~~lg~~~~A~~~~~~al~l~  131 (153)
T d2fbna1          68 SCNLNLATCYNKNKDYPKAIDHASKVLKID--KNNVKALYKLGVANMYFGFLEEAKENLYKAASLN  131 (153)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS
T ss_pred             HHHhhHHHHHHHhcccchhhhhhhcccccc--chhhhhhHHhHHHHHHcCCHHHHHHHHHHHHHhC
Confidence            355566667777777777777777776665  5667777777777777777777777777777653

>d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Cyclophilin 40
species: Cow (Bos taurus) [TaxId: 9913]

Probab=98.21  E-value=2.4e-05  Score=53.92  Aligned_cols=79  Identities=13%  Similarity=-0.068  Sum_probs=47.7

Q ss_pred             HhhHHHHHHHHhcCCChhHHHHHHHHHhhcCCCCccHHHHHHHHHHHHhcCcHHHHHHHHHHHhhCCCCCCHHhHHHHHH
Q 021791          154 AETYNCFFKEYRGRKDANGAMKLYRQMKEDDLCVPNIHTYNILIGMFMALNRMDMVREIWNHVKGSELGLDLDSYTMLIH  233 (307)
Q Consensus       154 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~  233 (307)
                      ...+..+..++.+.|++++|+..+.+..+..  +.+..+|..+..++...|++++|...|+.+.+.... +......+..
T Consensus        77 ~~~~~nla~~~~~~~~~~~Ai~~~~~al~~~--p~~~~a~~~~g~~~~~l~~~~~A~~~~~~al~l~p~-n~~~~~~l~~  153 (169)
T d1ihga1          77 LSCVLNIGACKLKMSDWQGAVDSCLEALEID--PSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPE-DKAIQAELLK  153 (169)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhhcccchhhhhhhhhhhhh--hhhhhHHHhHHHHHHHccCHHHHHHHHHHHHHhCCC-CHHHHHHHHH
Confidence            3445555666666667777777666666654  456666666666666777777777766666665322 4444444444


Q ss_pred             HH
Q 021791          234 GL  235 (307)
Q Consensus       234 ~~  235 (307)
                      +.
T Consensus       154 ~~  155 (169)
T d1ihga1         154 VK  155 (169)
T ss_dssp             HH
T ss_pred             HH
Confidence            43

>d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Clathrin heavy chain proximal leg segment
domain: Clathrin heavy chain proximal leg segment
species: Cow (Bos taurus) [TaxId: 9913]

Probab=98.21  E-value=0.00056  Score=52.22  Aligned_cols=235  Identities=9%  Similarity=-0.033  Sum_probs=114.6

Q ss_pred             HHHHHHHHHHhcCchhhHHHHHHHHHhcCCCCcHHHHHHHHHHHHhhCCCCcchhhHHHHHHHHHHHHHHHhcCCCCCHH
Q 021791            6 MYTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPNERFEKTIRNAEKVFDEMRVRGIEPDVT   85 (307)
Q Consensus         6 ~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~   85 (307)
                      --..+..-|.+.|.++.|..+|..+..         |..++..+.+          .+++..|.+.+....      +..
T Consensus        16 d~~~i~~~c~~~~lye~A~~lY~~~~d---------~~rl~~~~v~----------l~~~~~avd~~~k~~------~~~   70 (336)
T d1b89a_          16 HIQQVGDRCYDEKMYDAAKLLYNNVSN---------FGRLASTLVH----------LGEYQAAVDGARKAN------STR   70 (336)
T ss_dssp             -------------CTTTHHHHHHHTTC---------HHHHHHHHHT----------TTCHHHHHHHHHHHT------CHH
T ss_pred             CHHHHHHHHHHCCCHHHHHHHHHhCCC---------HHHHHHHHHh----------hccHHHHHHHHHHcC------CHH
Confidence            334466677788888888888875542         4555666666          555666666554331      566


Q ss_pred             HHHHHHHHHHhcCCchhHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHh
Q 021791           86 SFSIVLHVYSRAHKPQLSLDKLNFMKEKGICPTVATYTSVVKCLCSCGRIEDAEELLGEMVRNGVSPSAETYNCFFKEYR  165 (307)
Q Consensus        86 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~  165 (307)
                      +|..+...+.+......+     .+.......++.....++..|-..|.+++...+++..... -..+...++.++..|+
T Consensus        71 ~~k~~~~~l~~~~e~~la-----~i~~~~~~~~~d~l~~~v~~ye~~~~~e~Li~~Le~~~~~-~~~~~~~~~~L~~lya  144 (336)
T d1b89a_          71 TWKEVCFACVDGKEFRLA-----QMCGLHIVVHADELEELINYYQDRGYFEELITMLEAALGL-ERAHMGMFTELAILYS  144 (336)
T ss_dssp             HHHHHHHHHHHTTCHHHH-----HHTTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS-TTCCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhCcHHHHH-----HHHHHHhhcCHHHHHHHHHHHHHcCChHHHHHHHHHHHcC-CccchHHHHHHHHHHH
Confidence            777777777766554332     2222333345555566777777788888887777776543 2346666777777777


Q ss_pred             cCCChhHHHHHHHHHhhcCCCCccH--------HHHHHHHHHHHhcCcHHHHHHHHHHHhhCCCCCCHHhHHHHHHHHHc
Q 021791          166 GRKDANGAMKLYRQMKEDDLCVPNI--------HTYNILIGMFMALNRMDMVREIWNHVKGSELGLDLDSYTMLIHGLCE  237 (307)
Q Consensus       166 ~~~~~~~a~~~~~~~~~~~~~~~~~--------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~  237 (307)
                      +.+ .++..+.+......-  .+..        ..|..++-.|.+.|+++.|..+.-   ..  .++.......++.+.+
T Consensus       145 k~~-~~kl~e~l~~~s~~y--~~~k~~~~c~~~~l~~elv~Ly~~~~~~~~A~~~~i---~~--~~~~~~~~~f~e~~~k  216 (336)
T d1b89a_         145 KFK-PQKMREHLELFWSRV--NIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITMM---NH--PTDAWKEGQFKDIITK  216 (336)
T ss_dssp             TTC-HHHHHHHHHHHSTTS--CHHHHHHHHHTTTCHHHHHHHHHHTTCHHHHHHHHH---HS--TTTTCCHHHHHHHHHH
T ss_pred             HhC-hHHHHHHHHhccccC--CHHHHHHHHHHcCChHHHHHHHHhcCCHHHHHHHHH---Hc--chhhhhHHHHHHHHHc
Confidence            654 344444443321110  1110        112333444444444444433221   11  2233334445555666


Q ss_pred             cCcHHHHHHHHHHHHHcCCCCcHhhHHHHHHHHhhchhHHHHHHHH
Q 021791          238 KQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLK  283 (307)
Q Consensus       238 ~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~  283 (307)
                      .++.+...++....++.  .|  .....++......-+.....+.+
T Consensus       217 ~~N~e~~~~~i~~yL~~--~p--~~i~~lL~~v~~~~d~~r~V~~~  258 (336)
T d1b89a_         217 VANVELYYRAIQFYLEF--KP--LLLNDLLMVLSPRLDHTRAVNYF  258 (336)
T ss_dssp             CSSTHHHHHHHHHHHHH--CG--GGHHHHHHHHGGGCCHHHHHHHH
T ss_pred             cCChHHHHHHHHHHHHc--CH--HHHHHHHHHhccCCCHHHHHHHH
Confidence            66666655555555543  23  23344444444444444433333

>d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Cyclophilin 40
species: Cow (Bos taurus) [TaxId: 9913]

Probab=98.17  E-value=2.9e-05  Score=53.52  Aligned_cols=134  Identities=7%  Similarity=-0.038  Sum_probs=89.5

Q ss_pred             HHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHhcCCChhHHHHHHHHHhhcCCCCccHHHHHHHHHHHHh
Q 021791          123 TSVVKCLCSCGRIEDAEELLGEMVRNGVSPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDDLCVPNIHTYNILIGMFMA  202 (307)
Q Consensus       123 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~  202 (307)
                      ......+...|++++|+..|++....            ...........       ......  +.+...+..+..++.+
T Consensus        31 ~~~~~~~~~~~~y~~Ai~~y~~al~~------------~~~~~~~~~~~-------~~~~~~--~~~~~~~~nla~~~~~   89 (169)
T d1ihga1          31 KNIGNTFFKSQNWEMAIKKYTKVLRY------------VEGSRAAAEDA-------DGAKLQ--PVALSCVLNIGACKLK   89 (169)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHH------------HHHHHHHSCHH-------HHGGGH--HHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHh------------hhhhhhhhhhH-------HHHHhC--hhhHHHHHHHHHHHHh
Confidence            34455677788888888888776532            00000000000       111111  3456678888899999


Q ss_pred             cCcHHHHHHHHHHHhhCCCCCCHHhHHHHHHHHHccCcHHHHHHHHHHHHHcCCCCcHhhHHHHHHHHhhchhHHHH
Q 021791          203 LNRMDMVREIWNHVKGSELGLDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTW  279 (307)
Q Consensus       203 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a  279 (307)
                      .|++++|+..+..+.+... .+...|..+..++...|++++|+..|++.++.. +.+......+..+..+.....+.
T Consensus        90 ~~~~~~Ai~~~~~al~~~p-~~~~a~~~~g~~~~~l~~~~~A~~~~~~al~l~-p~n~~~~~~l~~~~~~l~~~~~~  164 (169)
T d1ihga1          90 MSDWQGAVDSCLEALEIDP-SNTKALYRRAQGWQGLKEYDQALADLKKAQEIA-PEDKAIQAELLKVKQKIKAQKDK  164 (169)
T ss_dssp             TTCHHHHHHHHHHHHTTCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHH
T ss_pred             hcccchhhhhhhhhhhhhh-hhhhHHHhHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999998753 378889999999999999999999999999863 23455555555555444444443

>d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP51, C-terminal domain
species: Monkey (Saimiri boliviensis) [TaxId: 27679]

Probab=98.17  E-value=9.9e-05  Score=50.64  Aligned_cols=62  Identities=11%  Similarity=0.083  Sum_probs=36.1

Q ss_pred             HHHHHHHHHHhcCcHHHHHHHHHHHhhCCCCCCHHhHHHHHHHHHccCcHHHHHHHHHHHHHc
Q 021791          192 TYNILIGMFMALNRMDMVREIWNHVKGSELGLDLDSYTMLIHGLCEKQKWKEACQYFVEMIEK  254 (307)
Q Consensus       192 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~  254 (307)
                      +|+.+..+|.+.|++++|+..++.+.... +.+..+|..+..++...|++++|...|++.++.
T Consensus        66 ~~~Nla~~~~~l~~~~~Ai~~~~~al~l~-p~~~~a~~~~~~~~~~l~~~~~A~~~~~~al~l  127 (168)
T d1kt1a1          66 AFLNLAMCYLKLREYTKAVECCDKALGLD-SANEKGLYRRGEAQLLMNEFESAKGDFEKVLEV  127 (168)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHS
T ss_pred             HHHhHHHHHHHhhhcccchhhhhhhhhcc-cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence            44455555666666666666666655543 225555666666666666666666666666543

>d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: SMG-7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.12  E-value=7.7e-06  Score=67.01  Aligned_cols=113  Identities=11%  Similarity=-0.107  Sum_probs=55.7

Q ss_pred             chhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHhcCCChhHHHHHHHHHhhcCCCCccHHHHHHHH
Q 021791          118 TVATYTSVVKCLCSCGRIEDAEELLGEMVRNGVSPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDDLCVPNIHTYNILI  197 (307)
Q Consensus       118 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~  197 (307)
                      +...+..+...+.+.|+.+.|...+.......   ...++..+...+...+++++|...|.+.....  +.+...|+.|.
T Consensus       119 ~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~---~~~~~~~LG~l~~~~~~~~~A~~~y~~A~~l~--P~~~~~~~~Lg  193 (497)
T d1ya0a1         119 CRVKSSQLGIISNKQTHTSAIVKPQSSSCSYI---CQHCLVHLGDIARYRNQTSQAESYYRHAAQLV--PSNGQPYNQLA  193 (497)
T ss_dssp             ------------------------CCHHHHHH---HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTBSHHHHHHH
T ss_pred             hHHHHHHhHHHHHhCCCHHHHHHHHHHHhCCC---HHHHHHHHHHHHHHcccHHHHHHHHHHHHHHC--CCchHHHHHHH
Confidence            34445555666666666666666655544321   12455556666777777777777777776664  45566777777


Q ss_pred             HHHHhcCcHHHHHHHHHHHhhCCCCCCHHhHHHHHHHHH
Q 021791          198 GMFMALNRMDMVREIWNHVKGSELGLDLDSYTMLIHGLC  236 (307)
Q Consensus       198 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~  236 (307)
                      ..+...|+..+|...|.+..... +|...++..|...+.
T Consensus       194 ~~~~~~~~~~~A~~~y~ral~~~-~~~~~a~~nL~~~~~  231 (497)
T d1ya0a1         194 ILASSKGDHLTTIFYYCRSIAVK-FPFPAASTNLQKALS  231 (497)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHSSS-BCCHHHHHHHHHHHH
T ss_pred             HHHHHcCCHHHHHHHHHHHHhCC-CCCHHHHHHHHHHHH
Confidence            77777777777777777666653 345666666655554

>d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP51, C-terminal domain
species: Monkey (Saimiri boliviensis) [TaxId: 27679]

Probab=98.11  E-value=0.00016  Score=49.51  Aligned_cols=77  Identities=8%  Similarity=-0.019  Sum_probs=49.5

Q ss_pred             hHHHHHHHHhcCCChhHHHHHHHHHhhcCCCCccHHHHHHHHHHHHhcCcHHHHHHHHHHHhhCCCCCCHHhHHHHHHHH
Q 021791          156 TYNCFFKEYRGRKDANGAMKLYRQMKEDDLCVPNIHTYNILIGMFMALNRMDMVREIWNHVKGSELGLDLDSYTMLIHGL  235 (307)
Q Consensus       156 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~  235 (307)
                      +|+.+..+|.+.|++++|+..++.....+  +.+..+|..+..++...|++++|...|..+..... .+......+-.+.
T Consensus        66 ~~~Nla~~~~~l~~~~~Ai~~~~~al~l~--p~~~~a~~~~~~~~~~l~~~~~A~~~~~~al~l~P-~n~~~~~~l~~~~  142 (168)
T d1kt1a1          66 AFLNLAMCYLKLREYTKAVECCDKALGLD--SANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNP-QNKAARLQIFMCQ  142 (168)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCT-TCHHHHHHHHHHH
T ss_pred             HHHhHHHHHHHhhhcccchhhhhhhhhcc--cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHH
Confidence            44556666777777777777777777665  56667777777777777777777777777776532 2444444443333

>d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: BTAD-like
domain: Probable regulatory protein EmbR, middle domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.08  E-value=0.00022  Score=49.36  Aligned_cols=122  Identities=13%  Similarity=0.047  Sum_probs=78.2

Q ss_pred             HHHHHhcCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHhcCCChhHHHHHHHHHhhcCCCCccHHHHHHHHHHHHhcCc
Q 021791          126 VKCLCSCGRIEDAEELLGEMVRNGVSPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDDLCVPNIHTYNILIGMFMALNR  205 (307)
Q Consensus       126 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~  205 (307)
                      .......|++++|.+.|.+....-  +....        ......+-+...-..+.     ......+..+...+...|+
T Consensus        18 g~~~~~~g~~e~A~~~~~~AL~l~--rG~~l--------~~~~~~~w~~~~r~~l~-----~~~~~a~~~la~~~~~~g~   82 (179)
T d2ff4a2          18 GVHAAAAGRFEQASRHLSAALREW--RGPVL--------DDLRDFQFVEPFATALV-----EDKVLAHTAKAEAEIACGR   82 (179)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHTTC--CSSTT--------GGGTTSTTHHHHHHHHH-----HHHHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHCCCHHHHHHHHHHHHhhC--ccccc--------ccCcchHHHHHHHHHHH-----HHHHHHHHHHHHHHHHCCC
Confidence            345667788888888887776531  11000        00001111111111221     1234566778888888888


Q ss_pred             HHHHHHHHHHHhhCCCCCCHHhHHHHHHHHHccCcHHHHHHHHHHHHH-----cCCCCcHhhH
Q 021791          206 MDMVREIWNHVKGSELGLDLDSYTMLIHGLCEKQKWKEACQYFVEMIE-----KGLLPQKVTF  263 (307)
Q Consensus       206 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~-----~~~~p~~~~~  263 (307)
                      +++|...++.+.... +.+...|..++.+|...|+..+|++.|+++.+     .|+.|+..+-
T Consensus        83 ~~~Al~~~~~al~~~-P~~e~~~~~l~~al~~~Gr~~eAl~~y~~~~~~L~~eLG~~P~~~l~  144 (179)
T d2ff4a2          83 ASAVIAELEALTFEH-PYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTLR  144 (179)
T ss_dssp             HHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHHH
T ss_pred             chHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCcCHHHH
Confidence            888888888888764 33778888888888888988888888888744     4888887653

>d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondrial import receptor subunit tom20-3
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=98.05  E-value=5.9e-05  Score=50.38  Aligned_cols=84  Identities=8%  Similarity=0.015  Sum_probs=62.3

Q ss_pred             HHhcCchhhHHHHHHHHHhcCCCCcHHHHHHHHHHHHhhCCCCcchhhHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHH
Q 021791           14 WCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPNERFEKTIRNAEKVFDEMRVRGIEPDVTSFSIVLHV   93 (307)
Q Consensus        14 ~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~   93 (307)
                      |-+.+.+++|++.|+...+.. +-+...+..+-.++...++...+..-.+.+++|+..|++..+.. +.+..+|..+..+
T Consensus         7 ~~r~~~fe~A~~~~e~al~~~-P~~~~~~~~~g~~l~~~~~~~~~~e~~~~~~~Ai~~~~kAl~l~-P~~~~a~~~lG~~   84 (145)
T d1zu2a1           7 FDRILLFEQIRQDAENTYKSN-PLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLID-PKKDEAVWCIGNA   84 (145)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred             HHHHccHHHHHHHHHHHHhhC-CcchHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHhc-chhhHHHhhHHHH
Confidence            456678999999999998873 33667788888788775555544444677889999999988774 3467788888888


Q ss_pred             HHhcCC
Q 021791           94 YSRAHK   99 (307)
Q Consensus        94 ~~~~~~   99 (307)
                      |...|+
T Consensus        85 y~~~g~   90 (145)
T d1zu2a1          85 YTSFAF   90 (145)
T ss_dssp             HHHHHH
T ss_pred             HHHccc
Confidence            776553

>d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: BTAD-like
domain: Probable regulatory protein EmbR, middle domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.01  E-value=0.00014  Score=50.40  Aligned_cols=122  Identities=9%  Similarity=-0.041  Sum_probs=86.8

Q ss_pred             HHHHHHhcCCchhHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHhcCCC
Q 021791           90 VLHVYSRAHKPQLSLDKLNFMKEKGICPTVATYTSVVKCLCSCGRIEDAEELLGEMVRNGVSPSAETYNCFFKEYRGRKD  169 (307)
Q Consensus        90 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~  169 (307)
                      ........|++++|.+.|......--  ...        +......+.+...-..+...    ....+..+...+...|+
T Consensus        17 ~g~~~~~~g~~e~A~~~~~~AL~l~r--G~~--------l~~~~~~~w~~~~r~~l~~~----~~~a~~~la~~~~~~g~   82 (179)
T d2ff4a2          17 AGVHAAAAGRFEQASRHLSAALREWR--GPV--------LDDLRDFQFVEPFATALVED----KVLAHTAKAEAEIACGR   82 (179)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHTTCC--SST--------TGGGTTSTTHHHHHHHHHHH----HHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHCCCHHHHHHHHHHHHhhCc--ccc--------cccCcchHHHHHHHHHHHHH----HHHHHHHHHHHHHHCCC
Confidence            33567789999999999999877511  100        00011111111111222221    34567788899999999


Q ss_pred             hhHHHHHHHHHhhcCCCCccHHHHHHHHHHHHhcCcHHHHHHHHHHHhh-----CCCCCCHHh
Q 021791          170 ANGAMKLYRQMKEDDLCVPNIHTYNILIGMFMALNRMDMVREIWNHVKG-----SELGLDLDS  227 (307)
Q Consensus       170 ~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-----~~~~~~~~~  227 (307)
                      +++|...+++.....  +-+...|..++.++.+.|+.++|++.|+++..     .|+.|+..+
T Consensus        83 ~~~Al~~~~~al~~~--P~~e~~~~~l~~al~~~Gr~~eAl~~y~~~~~~L~~eLG~~P~~~l  143 (179)
T d2ff4a2          83 ASAVIAELEALTFEH--PYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTL  143 (179)
T ss_dssp             HHHHHHHHHHHHHHS--TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHH
T ss_pred             chHHHHHHHHHHHhC--CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCcCHHH
Confidence            999999999999887  78899999999999999999999999998753     588888765

>d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]}

class: Multi-domain proteins (alpha and beta)
fold: ImpE-like
superfamily: ImpE-like
family: ImpE-like
domain: Hypothetical protein VPA1032
species: Vibrio parahaemolyticus [TaxId: 670]

Probab=97.99  E-value=1.2e-05  Score=59.76  Aligned_cols=122  Identities=15%  Similarity=0.012  Sum_probs=57.2

Q ss_pred             HhcCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHhcCCChhHHHHHHHHHhhcCCCCccHHHHHHHHHHHHhcCcHHHH
Q 021791          130 CSCGRIEDAEELLGEMVRNGVSPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDDLCVPNIHTYNILIGMFMALNRMDMV  209 (307)
Q Consensus       130 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a  209 (307)
                      .+.|++++|+..+++..+..+. +...+..+...++..|++++|...++...+..  +.+...+..+...+...+..+++
T Consensus         7 L~~G~l~eAl~~l~~al~~~P~-d~~ar~~La~lL~~~G~~e~A~~~l~~a~~l~--P~~~~~~~~l~~ll~a~~~~~~a   83 (264)
T d1zbpa1           7 LSEGQLQQALELLIEAIKASPK-DASLRSSFIELLCIDGDFERADEQLMQSIKLF--PEYLPGASQLRHLVKAAQARKDF   83 (264)
T ss_dssp             TTTTCHHHHHHHHHHHHHTCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--GGGHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHCCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCcHHHHHHHHHHHHhccccHHH
Confidence            3456666666666666655433 55666666666666666666666666665553  22333333333333322222222


Q ss_pred             HHHHHHHhhCCCCCCHHhHHHHHHHHHccCcHHHHHHHHHHHHHc
Q 021791          210 REIWNHVKGSELGLDLDSYTMLIHGLCEKQKWKEACQYFVEMIEK  254 (307)
Q Consensus       210 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~  254 (307)
                      ..-.......+.+++...+......+...|+.++|...++++.+.
T Consensus        84 ~~~~~~~~~~~~p~~~~~~l~~a~~~~~~gd~~~A~~~~~~a~e~  128 (264)
T d1zbpa1          84 AQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEEL  128 (264)
T ss_dssp             TTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred             HHHhhhhhcccCchHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhc
Confidence            111111001111111222233344455566666666666666544

>d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: SMG-7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.99  E-value=5.2e-05  Score=61.97  Aligned_cols=134  Identities=8%  Similarity=-0.092  Sum_probs=76.2

Q ss_pred             HHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCchhHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCChHHHHHHH
Q 021791           63 KTIRNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHKPQLSLDKLNFMKEKGICPTVATYTSVVKCLCSCGRIEDAEELL  142 (307)
Q Consensus        63 ~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~  142 (307)
                      +.++.++..+....+.. +++...+..+...+.+.|+.+.|...+....+..   ...++..+...+...|++++|...|
T Consensus       100 ~~Y~~ai~~l~~~~~l~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~---~~~~~~~LG~l~~~~~~~~~A~~~y  175 (497)
T d1ya0a1         100 GFYTQLLQELCTVFNVD-LPCRVKSSQLGIISNKQTHTSAIVKPQSSSCSYI---CQHCLVHLGDIARYRNQTSQAESYY  175 (497)
T ss_dssp             HHHHHHHHHHTC--------------------------------CCHHHHHH---HHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHCCC-hhhHHHHHHhHHHHHhCCCHHHHHHHHHHHhCCC---HHHHHHHHHHHHHHcccHHHHHHHH
Confidence            34444444443332221 2345567777778888888888887776655432   2356777888888999999999999


Q ss_pred             HHHHhCCCCCCHhhHHHHHHHHhcCCChhHHHHHHHHHhhcCCCCccHHHHHHHHHHHHhc
Q 021791          143 GEMVRNGVSPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDDLCVPNIHTYNILIGMFMAL  203 (307)
Q Consensus       143 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  203 (307)
                      ++..+..+. +...|+.+...+...|+..+|...|.+.....  +|...++..|...+.+.
T Consensus       176 ~~A~~l~P~-~~~~~~~Lg~~~~~~~~~~~A~~~y~ral~~~--~~~~~a~~nL~~~~~~~  233 (497)
T d1ya0a1         176 RHAAQLVPS-NGQPYNQLAILASSKGDHLTTIFYYCRSIAVK--FPFPAASTNLQKALSKA  233 (497)
T ss_dssp             HHHHHHCTT-BSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSS--BCCHHHHHHHHHHHHHH
T ss_pred             HHHHHHCCC-chHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC--CCCHHHHHHHHHHHHHh
Confidence            998887543 66789999999999999999999998888776  67777888877776543

>d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]}

class: Multi-domain proteins (alpha and beta)
fold: ImpE-like
superfamily: ImpE-like
family: ImpE-like
domain: Hypothetical protein VPA1032
species: Vibrio parahaemolyticus [TaxId: 670]

Probab=97.93  E-value=1.2e-05  Score=59.65  Aligned_cols=125  Identities=11%  Similarity=-0.023  Sum_probs=86.0

Q ss_pred             HhcCCChhHHHHHHHHHhhcCCCCccHHHHHHHHHHHHhcCcHHHHHHHHHHHhhCCCCCC-HHhHHHHHHHHHccCcHH
Q 021791          164 YRGRKDANGAMKLYRQMKEDDLCVPNIHTYNILIGMFMALNRMDMVREIWNHVKGSELGLD-LDSYTMLIHGLCEKQKWK  242 (307)
Q Consensus       164 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~li~~~~~~g~~~  242 (307)
                      ..+.|++++|+..+++..+..  +.|...+..+...++..|++++|.+.++...+..  |+ ...+..+...+...+..+
T Consensus         6 aL~~G~l~eAl~~l~~al~~~--P~d~~ar~~La~lL~~~G~~e~A~~~l~~a~~l~--P~~~~~~~~l~~ll~a~~~~~   81 (264)
T d1zbpa1           6 ALSEGQLQQALELLIEAIKAS--PKDASLRSSFIELLCIDGDFERADEQLMQSIKLF--PEYLPGASQLRHLVKAAQARK   81 (264)
T ss_dssp             HTTTTCHHHHHHHHHHHHHTC--TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--GGGHHHHHHHHHHHHHHHHHH
T ss_pred             HHHCCCHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCcHHHHHHHHHHHHhccccH
Confidence            457899999999999999987  7889999999999999999999999999998863  43 444444444444333333


Q ss_pred             HHHHHHHHHHHcCCCCcHhhHHHHHHHHhhchhHHHHHHHHHHhhhcCCC
Q 021791          243 EACQYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDEESIT  292 (307)
Q Consensus       243 ~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~  292 (307)
                      ++..-.......+-.++...+......+...|+.++|.+.+++..+....
T Consensus        82 ~a~~~~~~~~~~~~p~~~~~~l~~a~~~~~~gd~~~A~~~~~~a~e~~p~  131 (264)
T d1zbpa1          82 DFAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEELRQE  131 (264)
T ss_dssp             HHTTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCC
T ss_pred             HHHHHhhhhhcccCchHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCC
Confidence            32221111111111122233444556788899999999999988765543

>d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondrial import receptor subunit tom20-3
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=97.92  E-value=4.8e-05  Score=50.84  Aligned_cols=69  Identities=6%  Similarity=-0.064  Sum_probs=32.5

Q ss_pred             CChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHhcC----------CChhHHHHHHHHHhhcCCCCccHHHHHHHHHHHHh
Q 021791          133 GRIEDAEELLGEMVRNGVSPSAETYNCFFKEYRGR----------KDANGAMKLYRQMKEDDLCVPNIHTYNILIGMFMA  202 (307)
Q Consensus       133 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----------~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~  202 (307)
                      +.+++|...|+...+..+. +..++..+..++...          +.+++|+..|++..+.+  |.+..+|..+..+|..
T Consensus        11 ~~fe~A~~~~e~al~~~P~-~~~~~~~~g~~l~~~~~~~~~~e~~~~~~~Ai~~~~kAl~l~--P~~~~a~~~lG~~y~~   87 (145)
T d1zu2a1          11 LLFEQIRQDAENTYKSNPL-DADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLID--PKKDEAVWCIGNAYTS   87 (145)
T ss_dssp             HHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHH
T ss_pred             ccHHHHHHHHHHHHhhCCc-chHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHhc--chhhHHHhhHHHHHHH
Confidence            3344555555554444322 344444444433322          22345555666555554  4455556555555544


Q ss_pred             cC
Q 021791          203 LN  204 (307)
Q Consensus       203 ~~  204 (307)
                      .|
T Consensus        88 ~g   89 (145)
T d1zu2a1          88 FA   89 (145)
T ss_dssp             HH
T ss_pred             cc
Confidence            43

>d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Clathrin heavy chain proximal leg segment
domain: Clathrin heavy chain proximal leg segment
species: Cow (Bos taurus) [TaxId: 9913]

Probab=97.63  E-value=0.0069  Score=46.01  Aligned_cols=243  Identities=9%  Similarity=0.019  Sum_probs=142.9

Q ss_pred             HHHHHHHHHHhcCchhhHHHHHHHHHhcCCCCcHHHHHHHHHHHHhhCCCCcchhhHHHHHHHHHHHHHHHhcCCCCCHH
Q 021791            6 MYTSLIYGWCKINRIDMAERFLGEMIERGVEPNVVTYNVLLNGVCRRASLHPNERFEKTIRNAEKVFDEMRVRGIEPDVT   85 (307)
Q Consensus         6 ~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~   85 (307)
                      .|..++..+.+.++++.|.+++....      +..+|..+..++.+..          ...-     ..+.......++.
T Consensus        42 d~~rl~~~~v~l~~~~~avd~~~k~~------~~~~~k~~~~~l~~~~----------e~~l-----a~i~~~~~~~~~d  100 (336)
T d1b89a_          42 NFGRLASTLVHLGEYQAAVDGARKAN------STRTWKEVCFACVDGK----------EFRL-----AQMCGLHIVVHAD  100 (336)
T ss_dssp             CHHHHHHHHHTTTCHHHHHHHHHHHT------CHHHHHHHHHHHHHTT----------CHHH-----HHHTTTTTTTCHH
T ss_pred             CHHHHHHHHHhhccHHHHHHHHHHcC------CHHHHHHHHHHHHhCc----------HHHH-----HHHHHHHhhcCHH
Confidence            35567777788888888777765431      5568888887777632          1111     1233333455777


Q ss_pred             HHHHHHHHHHhcCCchhHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCC--------CHhhH
Q 021791           86 SFSIVLHVYSRAHKPQLSLDKLNFMKEKGICPTVATYTSVVKCLCSCGRIEDAEELLGEMVRNGVSP--------SAETY  157 (307)
Q Consensus        86 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~--------~~~~~  157 (307)
                      ....++..|-..|.+++...+++...... ..+...++.++..|++.+ .++..+.++..... ..+        ....|
T Consensus       101 ~l~~~v~~ye~~~~~e~Li~~Le~~~~~~-~~~~~~~~~L~~lyak~~-~~kl~e~l~~~s~~-y~~~k~~~~c~~~~l~  177 (336)
T d1b89a_         101 ELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKFK-PQKMREHLELFWSR-VNIPKVLRAAEQAHLW  177 (336)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHTTST-TCCHHHHHHHHHHHHTTC-HHHHHHHHHHHSTT-SCHHHHHHHHHTTTCH
T ss_pred             HHHHHHHHHHHcCChHHHHHHHHHHHcCC-ccchHHHHHHHHHHHHhC-hHHHHHHHHhcccc-CCHHHHHHHHHHcCCh
Confidence            77889999999999999999999876542 457778889999998865 34443333332110 110        11223


Q ss_pred             HHHHHHHhcCCChhHHHHHHHHHhhcCCCCccHHHHHHHHHHHHhcCcHHHHHHHHHHHhhCCCCCCHHhHHHHHHHH--
Q 021791          158 NCFFKEYRGRKDANGAMKLYRQMKEDDLCVPNIHTYNILIGMFMALNRMDMVREIWNHVKGSELGLDLDSYTMLIHGL--  235 (307)
Q Consensus       158 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~--  235 (307)
                      ..++-.|.+.|+++.|..+.-.-      +++..-....+..+.+..+.+...++.....+.  .|  ...+.++...  
T Consensus       178 ~elv~Ly~~~~~~~~A~~~~i~~------~~~~~~~~~f~e~~~k~~N~e~~~~~i~~yL~~--~p--~~i~~lL~~v~~  247 (336)
T d1b89a_         178 AELVFLYDKYEEYDNAIITMMNH------PTDAWKEGQFKDIITKVANVELYYRAIQFYLEF--KP--LLLNDLLMVLSP  247 (336)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHS------TTTTCCHHHHHHHHHHCSSTHHHHHHHHHHHHH--CG--GGHHHHHHHHGG
T ss_pred             HHHHHHHHhcCCHHHHHHHHHHc------chhhhhHHHHHHHHHccCChHHHHHHHHHHHHc--CH--HHHHHHHHHhcc
Confidence            44455555555555554443222      233333344556666777776666666555543  22  2334444444  


Q ss_pred             -----------HccCcHHHHHHHHHHHHHcCCCCcHhhHHHHHHHHhhchhHHHHHHHHHH
Q 021791          236 -----------CEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKK  285 (307)
Q Consensus       236 -----------~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~  285 (307)
                                 -+.++.......++...+.|   +..+.+++...|...++++.-++..+.
T Consensus       248 ~~d~~r~V~~~~k~~~l~li~p~Le~v~~~n---~~~vn~al~~lyie~~d~~~l~~~i~~  305 (336)
T d1b89a_         248 RLDHTRAVNYFSKVKQLPLVKPYLRSVQNHN---NKSVNESLNNLFITEEDYQALRTSIDA  305 (336)
T ss_dssp             GCCHHHHHHHHHHTTCTTTTHHHHHHHHTTC---CHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHhcCCcHHHHHHHHHHHHcC---hHHHHHHHHHHHhCcchhHHHHHHHHH
Confidence                       44444444555555544444   346788899999999988776666544

>d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: CT2138-like
domain: Hypothetical protein CT2138
species: Chlorobium tepidum [TaxId: 1097]

Probab=97.49  E-value=0.0014  Score=43.95  Aligned_cols=64  Identities=17%  Similarity=0.066  Sum_probs=42.3

Q ss_pred             HHHHHHHHHHHhcCcHHHHHHHHHHHhhC-----CCCCC-----HHhHHHHHHHHHccCcHHHHHHHHHHHHHc
Q 021791          191 HTYNILIGMFMALNRMDMVREIWNHVKGS-----ELGLD-----LDSYTMLIHGLCEKQKWKEACQYFVEMIEK  254 (307)
Q Consensus       191 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~~~~~-----~~~~~~li~~~~~~g~~~~a~~~~~~~~~~  254 (307)
                      ..|+.+..+|...|++++|...++.....     ...++     ...+..+..+|...|++++|+..|++.++.
T Consensus        56 ~~~~nlg~~~~~lg~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~a~~~~g~~~~~lg~~eeA~~~~~~Al~l  129 (156)
T d2hr2a1          56 FCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEM  129 (156)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCccchhhHhhhhhhhcccccccccccccchhHHHHhhhHHHHHHHHHHHHHHHHHHHHHHh
Confidence            45666777777777777777776665531     11111     124566778888888888888888887653

>d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: CT2138-like
domain: Hypothetical protein CT2138
species: Chlorobium tepidum [TaxId: 1097]

Probab=97.41  E-value=0.0022  Score=42.97  Aligned_cols=99  Identities=13%  Similarity=-0.080  Sum_probs=71.4

Q ss_pred             HHHHHH--HHHHHhcCcHHHHHHHHHHHhhCCCC-C----------CHHhHHHHHHHHHccCcHHHHHHHHHHHHHc---
Q 021791          191 HTYNIL--IGMFMALNRMDMVREIWNHVKGSELG-L----------DLDSYTMLIHGLCEKQKWKEACQYFVEMIEK---  254 (307)
Q Consensus       191 ~~~~~l--~~~~~~~~~~~~a~~~~~~~~~~~~~-~----------~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~---  254 (307)
                      .+|..+  ...+...|++++|+..|++....... |          ....|+.+..+|...|++++|...+++.++.   
T Consensus         8 ~a~~~l~~g~~~~~~g~y~~Ai~~y~~Al~i~~~~~~~~~~~~~~~~a~~~~nlg~~~~~lg~~~~A~~~~~~al~~~~~   87 (156)
T d2hr2a1           8 GAYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNR   87 (156)
T ss_dssp             HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhChhhhhhhhcccchhHHHHHHHHHHHHHHcCccchhhHhhhhhhhcccc
Confidence            345544  44556678888888888887753111 1          1356888999999999999999999998753   


Q ss_pred             --CCCCc-----HhhHHHHHHHHhhchhHHHHHHHHHHhhhc
Q 021791          255 --GLLPQ-----KVTFETLYRGLIQSDMLRTWRRLKKKLDEE  289 (307)
Q Consensus       255 --~~~p~-----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~  289 (307)
                        ...++     ...+..+..+|...|++++|...|++..+.
T Consensus        88 ~~~~~~~~~~~~~~a~~~~g~~~~~lg~~eeA~~~~~~Al~l  129 (156)
T d2hr2a1          88 RGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEM  129 (156)
T ss_dssp             HCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             cccccccccchhHHHHhhhHHHHHHHHHHHHHHHHHHHHHHh
Confidence              12222     124667788999999999999999986543

>d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.29  E-value=0.002  Score=39.06  Aligned_cols=67  Identities=7%  Similarity=-0.100  Sum_probs=42.0

Q ss_pred             CHHHHHHHHHHHHhcCCchhHHHHHHHHHHcC-----CCC-chhhHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 021791           83 DVTSFSIVLHVYSRAHKPQLSLDKLNFMKEKG-----ICP-TVATYTSVVKCLCSCGRIEDAEELLGEMVRNG  149 (307)
Q Consensus        83 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~-----~~~-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~  149 (307)
                      +...+-.+...+.+.|+++.|...|++..+..     ..+ ...++..+..++.+.|++++|...++++.+..
T Consensus         4 saddc~~lG~~~~~~g~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~l~   76 (95)
T d1tjca_           4 TAEDSFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELD   76 (95)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred             cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhhHHHhcCChHHHHHHHHHHHHhC
Confidence            33444556667777777777777776665431     111 13456667777777777777777777776654

>d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.20  E-value=0.0023  Score=38.76  Aligned_cols=77  Identities=13%  Similarity=0.056  Sum_probs=48.9

Q ss_pred             chhhHHHHHHHHHhcCChHHHHHHHHHHHhCC-----CCCC-HhhHHHHHHHHhcCCChhHHHHHHHHHhhcCCCCccHH
Q 021791          118 TVATYTSVVKCLCSCGRIEDAEELLGEMVRNG-----VSPS-AETYNCFFKEYRGRKDANGAMKLYRQMKEDDLCVPNIH  191 (307)
Q Consensus       118 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~-----~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~  191 (307)
                      +...+-.+...+.+.|++++|...|++..+..     ..++ ..++..+..++.+.|++++|...+++..+..  |-+..
T Consensus         4 saddc~~lG~~~~~~g~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~l~--P~~~~   81 (95)
T d1tjca_           4 TAEDSFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELD--PEHQR   81 (95)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHH
T ss_pred             cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhhHHHhcCChHHHHHHHHHHHHhC--cCCHH
Confidence            33445567777788888888888887766431     1111 3466677777777777777777777777664  34444


Q ss_pred             HHHHH
Q 021791          192 TYNIL  196 (307)
Q Consensus       192 ~~~~l  196 (307)
                      +++.+
T Consensus        82 a~~Nl   86 (95)
T d1tjca_          82 ANGNL   86 (95)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            44443

>d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein B (HcpB)
species: Helicobacter pylori [TaxId: 210]

Probab=96.96  E-value=0.014  Score=37.63  Aligned_cols=112  Identities=8%  Similarity=-0.040  Sum_probs=60.3

Q ss_pred             HHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCchhHHHHHHHHHHcCCCCchhhHHHHHHHHHh----cCChHH
Q 021791           62 EKTIRNAEKVFDEMRVRGIEPDVTSFSIVLHVYSRAHKPQLSLDKLNFMKEKGICPTVATYTSVVKCLCS----CGRIED  137 (307)
Q Consensus        62 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~----~~~~~~  137 (307)
                      .+++++|.++|++..+.|..   ..+..|.  .....+.+++.+++++..+.|   ++.....|...|..    ..+.++
T Consensus         6 ~kd~~~A~~~~~kaa~~g~~---~a~~~l~--~~~~~~~~~a~~~~~~aa~~g---~~~a~~~Lg~~y~~g~~~~~d~~~   77 (133)
T d1klxa_           6 KKDLKKAIQYYVKACELNEM---FGCLSLV--SNSQINKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLRK   77 (133)
T ss_dssp             HHHHHHHHHHHHHHHHTTCT---THHHHHH--TCTTSCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHH
T ss_pred             ccCHHHHHHHHHHHHHCCCh---hhhhhhc--cccccCHHHHHHHHhhhhccc---chhhhhhHHHhhhhccccchhhHH
Confidence            45666666666666665522   2222222  123345566666666666654   33444444444443    345667


Q ss_pred             HHHHHHHHHhCCCCCCHhhHHHHHHHHhc----CCChhHHHHHHHHHhhcC
Q 021791          138 AEELLGEMVRNGVSPSAETYNCFFKEYRG----RKDANGAMKLYRQMKEDD  184 (307)
Q Consensus       138 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~  184 (307)
                      |.+.|++..+.|   ++.....|...|..    ..+.++|..+|+...+.+
T Consensus        78 A~~~~~~aa~~g---~~~a~~~Lg~~y~~G~gv~~d~~~A~~~~~~Aa~~G  125 (133)
T d1klxa_          78 AAQYYSKACGLN---DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLG  125 (133)
T ss_dssp             HHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred             HHHHHhhhhccC---cchHHHHHHHHHHcCCccCCCHHHHHHHHHHHHHCC
Confidence            777777766654   33444444444443    346667777777766655

>d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein B (HcpB)
species: Helicobacter pylori [TaxId: 210]

Probab=96.83  E-value=0.025  Score=36.39  Aligned_cols=111  Identities=13%  Similarity=-0.018  Sum_probs=79.5

Q ss_pred             CchhHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHhc----CCChhHHH
Q 021791           99 KPQLSLDKLNFMKEKGICPTVATYTSVVKCLCSCGRIEDAEELLGEMVRNGVSPSAETYNCFFKEYRG----RKDANGAM  174 (307)
Q Consensus        99 ~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~  174 (307)
                      |+++|.++|++..+.|.   ......+.  .....+.++|...+++..+.|   ++.....|...|..    ..+.++|.
T Consensus         8 d~~~A~~~~~kaa~~g~---~~a~~~l~--~~~~~~~~~a~~~~~~aa~~g---~~~a~~~Lg~~y~~g~~~~~d~~~A~   79 (133)
T d1klxa_           8 DLKKAIQYYVKACELNE---MFGCLSLV--SNSQINKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLRKAA   79 (133)
T ss_dssp             HHHHHHHHHHHHHHTTC---TTHHHHHH--TCTTSCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHH
T ss_pred             CHHHHHHHHHHHHHCCC---hhhhhhhc--cccccCHHHHHHHHhhhhccc---chhhhhhHHHhhhhccccchhhHHHH
Confidence            57789999999888763   23333333  234568899999999988876   45555556665554    46789999


Q ss_pred             HHHHHHhhcCCCCccHHHHHHHHHHHHh----cCcHHHHHHHHHHHhhCCC
Q 021791          175 KLYRQMKEDDLCVPNIHTYNILIGMFMA----LNRMDMVREIWNHVKGSEL  221 (307)
Q Consensus       175 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~  221 (307)
                      ++|++..+.+    ++.....|...|..    ..+.++|.+.++...+.|.
T Consensus        80 ~~~~~aa~~g----~~~a~~~Lg~~y~~G~gv~~d~~~A~~~~~~Aa~~G~  126 (133)
T d1klxa_          80 QYYSKACGLN----DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLGS  126 (133)
T ss_dssp             HHHHHHHHTT----CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC
T ss_pred             HHHhhhhccC----cchHHHHHHHHHHcCCccCCCHHHHHHHHHHHHHCCC
Confidence            9999998876    23445556666655    4689999999999988763

>d1wy6a1 a.118.20.1 (A:7-167) Hypothetical protein ST1625 {Archaeon Sulfolobus tokodaii [TaxId: 111955]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Hypothetical protein ST1625
family: Hypothetical protein ST1625
domain: Hypothetical protein ST1625
species: Archaeon Sulfolobus tokodaii [TaxId: 111955]

Probab=96.55  E-value=0.036  Score=34.70  Aligned_cols=138  Identities=11%  Similarity=0.006  Sum_probs=66.9

Q ss_pred             hcCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHhcCCChhHHHHHHHHHhhcCCCCccHHHHHHHHHHHHhcCcHHHHH
Q 021791          131 SCGRIEDAEELLGEMVRNGVSPSAETYNCFFKEYRGRKDANGAMKLYRQMKEDDLCVPNIHTYNILIGMFMALNRMDMVR  210 (307)
Q Consensus       131 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~  210 (307)
                      -.|.+++..++..+....   .+..-||.++--....-+-+....+++.+-..-.+.              .++++....
T Consensus        14 ldG~ve~Gveii~k~~~s---s~~~E~NW~ICNiidt~dC~~v~~~Ld~IG~~FDls--------------~C~Nlk~vv   76 (161)
T d1wy6a1          14 LDGYIDEGVKIVLEITKS---STKSEYNWFICNLLESIDCRYMFQVLDKIGSYFDLD--------------KCQNLKSVV   76 (161)
T ss_dssp             HTTCHHHHHHHHHHHHHH---SCHHHHTHHHHHHHHHCCHHHHHHHHHHHGGGSCGG--------------GCSCTHHHH
T ss_pred             HhhhHHhHHHHHHHHccc---CCccccceeeeecccccchHHHHHHHHHHhhhcCch--------------hhhcHHHHH
Confidence            345555555555555543   133444444444444444455555554443321100              122233222


Q ss_pred             HHHHHHhhCCCCCCHHhHHHHHHHHHccCcHHHHHHHHHHHHHcCCCCcHhhHHHHHHHHhhchhHHHHHHHHHHhhhcC
Q 021791          211 EIWNHVKGSELGLDLDSYTMLIHGLCEKQKWKEACQYFVEMIEKGLLPQKVTFETLYRGLIQSDMLRTWRRLKKKLDEES  290 (307)
Q Consensus       211 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~  290 (307)
                      ..+-.+.     .+...++..+..+..+|+-++..++++.+.+. -.|++.....+..+|.+.|...++.+++++..+.|
T Consensus        77 ~C~~~~n-----~~se~vdlALd~lv~~~kkd~Ld~i~~~l~kn-~~i~~~~llkia~A~kkig~~re~nell~~ACe~G  150 (161)
T d1wy6a1          77 ECGVINN-----TLNEHVNKALDILVIQGKRDKLEEIGREILKN-NEVSASILVAIANALRRVGDERDATTLLIEACKKG  150 (161)
T ss_dssp             HHHHHTT-----CCCHHHHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred             HHHHHhc-----chHHHHHHHHHHHHHhccHHHHHHHHHHHHhc-CCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHHh
Confidence            2222221     13344455555566666666666666665442 34555555666666666666666666666665555


Q ss_pred             C
Q 021791          291 I  291 (307)
Q Consensus       291 ~  291 (307)
                      +
T Consensus       151 ~  151 (161)
T d1wy6a1         151 E  151 (161)
T ss_dssp             C
T ss_pred             H
Confidence            4

>d1wy6a1 a.118.20.1 (A:7-167) Hypothetical protein ST1625 {Archaeon Sulfolobus tokodaii [TaxId: 111955]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Hypothetical protein ST1625
family: Hypothetical protein ST1625
domain: Hypothetical protein ST1625
species: Archaeon Sulfolobus tokodaii [TaxId: 111955]

Probab=95.71  E-value=0.11  Score=32.50  Aligned_cols=66  Identities=5%  Similarity=-0.061  Sum_probs=39.1

Q ss_pred             HhhHHHHHHHHhcCCChhHHHHHHHHHhhcCCCCccHHHHHHHHHHHHhcCcHHHHHHHHHHHhhCCC
Q 021791          154 AETYNCFFKEYRGRKDANGAMKLYRQMKEDDLCVPNIHTYNILIGMFMALNRMDMVREIWNHVKGSEL  221 (307)
Q Consensus       154 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~  221 (307)
                      ...++..++....+|.-+...++++.+.+.+  .+++...-.+..+|.+.|...++-+++.+..+.|.
T Consensus        86 se~vdlALd~lv~~~kkd~Ld~i~~~l~kn~--~i~~~~llkia~A~kkig~~re~nell~~ACe~G~  151 (161)
T d1wy6a1          86 NEHVNKALDILVIQGKRDKLEEIGREILKNN--EVSASILVAIANALRRVGDERDATTLLIEACKKGE  151 (161)
T ss_dssp             CHHHHHHHHHHHHTTCHHHHHHHHHHHC--C--CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHHHHhccHHHHHHHHHHHHhcC--CCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHHhH
Confidence            3444555556666666666666666655544  55556666666666666666666666666666553

>d1v54e_ a.118.11.1 (E:) Cytochrome c oxidase subunit E {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Cytochrome c oxidase subunit E
family: Cytochrome c oxidase subunit E
domain: Cytochrome c oxidase subunit E
species: Cow (Bos taurus) [TaxId: 9913]

Probab=94.36  E-value=0.24  Score=29.22  Aligned_cols=40  Identities=15%  Similarity=0.321  Sum_probs=16.9

Q ss_pred             HHHHHhCCCCCCHhhHHHHHHHHhcCCChhHHHHHHHHHh
Q 021791          142 LGEMVRNGVSPSAETYNCFFKEYRGRKDANGAMKLYRQMK  181 (307)
Q Consensus       142 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~  181 (307)
                      ++.+......|++....+.+++|.+.+++..|.++|+.+.
T Consensus        29 mN~l~~~DlVPeP~Ii~aALrAcRRvND~alAVR~lE~vK   68 (105)
T d1v54e_          29 MNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVK   68 (105)
T ss_dssp             HHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence            3333333344444444444444444444444444444443

>d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=94.10  E-value=0.35  Score=30.14  Aligned_cols=47  Identities=11%  Similarity=0.027  Sum_probs=20.0

Q ss_pred             HHHHHHHHHHhCCCCCCHhhHHHHHHHHhcCCChhHHHHHHHHHhhc
Q 021791          137 DAEELLGEMVRNGVSPSAETYNCFFKEYRGRKDANGAMKLYRQMKED  183 (307)
Q Consensus       137 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~  183 (307)
                      +++.+++++...+..-....+-.+.-+|.+.|++++|.+.++.+.+.
T Consensus        56 ~gI~lLe~~~~~~p~~~rd~lY~Lav~yyklgdy~~A~~~~~~~L~i  102 (124)
T d2pqrb1          56 LGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEH  102 (124)
T ss_dssp             HHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhcCchhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHcc
Confidence            44444444443321101123333444444555555555555555444

>d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=93.84  E-value=0.4  Score=29.88  Aligned_cols=51  Identities=8%  Similarity=0.031  Sum_probs=32.0

Q ss_pred             HHHHHHHHHHHHHHHhcCCCCC-HHHHHHHHHHHHhcCCchhHHHHHHHHHHc
Q 021791           62 EKTIRNAEKVFDEMRVRGIEPD-VTSFSIVLHVYSRAHKPQLSLDKLNFMKEK  113 (307)
Q Consensus        62 ~~~~~~a~~~~~~~~~~~~~~~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~  113 (307)
                      ..++++++.+|++..+.+ +.+ ...+-.|.-+|.+.|++++|.+.++.+.+.
T Consensus        51 ~~d~~~gI~lLe~~~~~~-p~~~rd~lY~Lav~yyklgdy~~A~~~~~~~L~i  102 (124)
T d2pqrb1          51 VNDERLGVKILTDIYKEA-ESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEH  102 (124)
T ss_dssp             HHHHHHHHHHHHHHHHHC-GGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhcC-chhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHcc
Confidence            566677777777766542 222 234455566666777777777777777665

>d1v54e_ a.118.11.1 (E:) Cytochrome c oxidase subunit E {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Cytochrome c oxidase subunit E
family: Cytochrome c oxidase subunit E
domain: Cytochrome c oxidase subunit E
species: Cow (Bos taurus) [TaxId: 9913]

Probab=93.22  E-value=0.42  Score=28.18  Aligned_cols=46  Identities=22%  Similarity=0.169  Sum_probs=23.3

Q ss_pred             HHHHHHHHHhhcCCCCccHHHHHHHHHHHHhcCcHHHHHHHHHHHhh
Q 021791          172 GAMKLYRQMKEDDLCVPNIHTYNILIGMFMALNRMDMVREIWNHVKG  218 (307)
Q Consensus       172 ~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~  218 (307)
                      ++.+-++.+...+. .|++.+..+.+++|.+.+++..|.++++.++.
T Consensus        24 e~rrgmN~l~~~Dl-VPeP~Ii~aALrAcRRvND~alAVR~lE~vK~   69 (105)
T d1v54e_          24 ELRKGMNTLVGYDL-VPEPKIIDAALRACRRLNDFASAVRILEVVKD   69 (105)
T ss_dssp             HHHHHHHHHTTSSB-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhcccc-CCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence            34444444444443 45555555555555555555555555555543