Citrus Sinensis ID: 021799

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------
Protein Sequence
METGTSSKEDAPVFLDRSSRVTRGKRMNKLLDDENEEDEAFWNQDALKEEENDDNYEEEQEIADEFDSDFDEDEPEPDEEVENEVDERVWTKKRLIFPGKPLTKKKKKKKILSKLDSPDKDVKSNEQSILPENHDVPNDVEGERIIRKSTRTAVVVRQAERDAIRAALQATMKPIKRKKEGEEKRMTQEEMLLEAAQTEIMNLRNLERVLAREEEVKKRAIVHKAVYTGPQLRYLSKDGYSYLEFSKGVSFQSELSTTSVPYPERAVCAVTGLPAKNTMKRTTIATEEFILLWTMTVSNLLQIGVGE
Secondary Structure (PSIPRED)
cccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHcHHHHccccccccccccccccccccccccccccccHHHHHHHHHHHHHHcccccccccHHHHHHHHccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccEEEEEcccccEEEEccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHcccc
Secondary Structure Prediction (SSPRO)
ccccccccccccEEcccccHccHHHHHHHHHHHHHHHHHHHHcHHHHHHHHccccccHHHHHHcccccccccccccccccccccHHcccccccEcccccccccccccccccccccHcccccccccHccccccccccccccccccEEccccHHHHHHHHHHHHHHHHHHHHcccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcEcccccccccEEEEEEccccEEEEEEccccccccccccccccccccEEEEEcccccccccccHHHHHHHHHcccccHHHHHHccccc
Coil and Loop (DISEMBL)
metgtsskedapvfldrssrvtrGKRMNKllddeneedEAFWNQDalkeeenddnyeEEQEIAdefdsdfdedepepdeevenEVDERVWtkkrlifpgkpltkkkkKKKILSkldspdkdvksneqsilpenhdvpndvegeriirkSTRTAVVVRQAERDAIRAALQATMKpikrkkegeEKRMTQEEMLLEAAQTEIMNLRNLERVLAREEEVKKRAIVHKAvytgpqlrylskdgysylefskgvsfqselsttsvpyperavcavtglpakntmkrtTIATEEFILLWTMTVSNLLQIGVGE
Flexible Loop (DISEMBL)
metgtsskedapvfldrssrvtrgkrmnkllddeneedeAFWNQDALKEEENDDNYEEEQEIADEfdsdfdedepepdeevenevdervwtkkrlifpgkpltkkkkkkkilskldspdkdvksneqsilpenhdvpndvegeriirkstrtavvvrQAERDAIRAalqatmkpikrkkegeekrmTQEEMLLEAAQTEIMNLRNLERVLAREEEVKkraivhkavytgpqlrylSKDGYSYLEFSKGVSFQselsttsvpypeRAVCAvtglpakntmkrTTIATEEFILLWTMTVSNLLQIGVGE
Low Complexity Region (SEG)
METGTSSKEDAPVFLDRSSRVTRGKRMNKLLddeneedeAFWNQDALKeeenddnyeeeqeIAdefdsdfdedepepdeevenevdeRVWTKKRLIFPGkpltkkkkkkkilskldspdkdVKSNEQSILPENHDVPNDVEGERIIRKSTRTAVVVRQAERDAIRAALQATMKPIKRKKEGEEKRMTQEEMLLEAAQTEIMNLRNLERVLAREEEVKKRAIVHKAVYTGPQLRYLSKDGYSYLEFSKGVSFQSELSTTSVPYPERAVCAVTGLPAKNTMKRTTIATEEFILLWTMTVSNLLQIGVGE
Disordered region (IsUnstruct)
*****************************************************************************************WT***LI********************************************************AVVV******************************************EIMNLRNLERVLAREEEVKKRAIVHKAVYTGPQLRYLSKDGYSYLEFSKGVSFQSELSTTSVPYPERAVCAVTGLPAKNTMKRTTIATEEFILLWTMTVSNLLQIG***
Disordered Region (DISOPRED)
*************************RMNKLLDDENEEDEAFWNQDALKEEENDD****************************************************************************************************************************************MLLEAAQTEIMNLRNLERV******************TGPQLRYLSKDGYSYLEFSKGVS****************VCAVTGLPAKNTMKRTTIATEEFILLWTMTVS*********
Disordered Region (DISEMBL)
***********PVFLDRSSRVTRGKRMNKLLDDENEEDEAFWNQDALK*************IADEF********************ERVWTKKRLIFPGKP************************EQSILPENHDVPNDVEGERIIRKSTRTAVVVRQAERDAIRAALQATMKPI***********TQEEMLLEAAQTEIMNLRNLERVLAREEEVKKRAIVHKAVYTGPQLRYLSKDGYSYLEFSKGVSFQSELSTTSVPYPERAVCAVTGLPAKNTMKRTTIATEEFILLWTMTVSNLLQIGVGE
Disordered Region (DISPRO)
***************DRSSRVTRGKRMNKLLDDENEEDEAFWNQDALKEEEN***YEEEQE***************************************************************************************************************************RMTQEEMLLEAAQTEIMNLRNLERVLAREEEVKKRAIVHKAVYTGPQLRYLSKDGYSYLEFSKGVSFQSELSTTSVPYPERAVCAVTGLPAKNTMKRTTIATEEFILLWTMTVSNLLQIGVG*
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
METGTSSKEDAPVFLDRSSRVTRGKRMNKLLDDENEEDEAFWNQDALKEEENDDNYEEEQEIADEFDSDFDEDEPEPDEEVENEVDERVWTKKRLIFPGKPLTKKKKKKKILSKLDSPDKDVKSNEQSILPENHDVPNDVEGERIIRKSTRTAVVVRQAERDAIRAALQATMKPIKRKxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxEEVKKRAIVHKAVYTGPQLRYLSKDGYSYLEFSKGVSFQSELSTTSVPYPERAVCAVTGLPAKNTMKRTTIATEEFILLWTMTVSNLLQIGVGE
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	307	2.2.26 [Sep-21-2011]
Q5E9F6	364	Vacuolar protein sorting-	yes	no	0.573	0.483	0.340	9e-08
Q5R5V9	364	Vacuolar protein sorting-	yes	no	0.573	0.483	0.340	9e-08
Q62481	368	Vacuolar protein sorting-	yes	no	0.573	0.478	0.340	9e-08
Q6GNJ8	353	Vacuolar protein sorting-	N/A	no	0.667	0.580	0.294	1e-07
Q15906	364	Vacuolar protein sorting-	yes	no	0.573	0.483	0.340	1e-07
Q9VKM6	351	Vacuolar protein sorting-	yes	no	0.869	0.760	0.249	6e-07

>sp|Q5E9F6|VPS72_BOVIN Vacuolar protein sorting-associated protein 72 homolog OS=Bos taurus GN=VPS72 PE=2 SV=1

 Score = 58.2 bits (139), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 67/197 (34%), Positives = 93/197 (47%), Gaps = 21/197 (10%)

Query: 17  RSSRVTRGKRMNKLLDDENEEDEAFWNQ-DALKEEENDDNYEEEQ-EIADEFDSDFD--- 71
           R+ R T G R++ LL+ E EEDE +        EE  DD Y+ +Q +  DE DSDFD   
Sbjct: 7   RAPRKTAGNRLSGLLEKE-EEDEFYQTTYGGFTEESGDDEYQGDQSDTEDEVDSDFDIDE 65

Query: 72  EDEPEPDEEVENEVDERVWTKKRLIFPGKPLTKKKKKKKILSKLDSPDKDVKSNEQSILP 131
            DEP  D E E    +R    K    P K L    + +K+ +   S  K     E+++LP
Sbjct: 66  GDEPSSDGEAEEPRRKRRVVTKAYKEPLKSL----RPRKVSTPAGSSQK--TREEKALLP 119

Query: 132 -ENHDVPNDVEGERIIRKSTRTAVVVRQAERDAIRAALQATMKPIKRKKEGEEKRMTQEE 190
            E  D   D       RKS R +    +  R       +   +  +RK    E+ +TQEE
Sbjct: 120 LELQDDGTDS------RKSMRQSTA--EHTRQTFLRVQERQGQSRRRKGPHCERPLTQEE 171

Query: 191 MLLEAAQTEIMNLRNLE 207
           +L EA  TE +NLR+LE
Sbjct: 172 LLREAKITEELNLRSLE 188

Could be a DNA-binding transcriptional regulator. May be involved in chromatin modification and remodeling.
Bos taurus (taxid: 9913)

>sp|Q5R5V9|VPS72_PONAB Vacuolar protein sorting-associated protein 72 homolog OS=Pongo abelii GN=VPS72 PE=2 SV=1

 Score = 57.8 bits (138), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 67/197 (34%), Positives = 94/197 (47%), Gaps = 21/197 (10%)

Query: 17  RSSRVTRGKRMNKLLDDENEEDEAFWNQ-DALKEEENDDNYEEEQ-EIADEFDSDFD--- 71
           R+ R T G R++ LL+ E EEDE +        EE  DD Y+ +Q +  DE DSDFD   
Sbjct: 7   RAPRKTAGNRLSGLLEAE-EEDEFYQTTYGGFTEESGDDEYQGDQSDTEDEVDSDFDIDE 65

Query: 72  EDEPEPDEEVENEVDERVWTKKRLIFPGKPLTKKKKKKKILSKLDSPDKDVKSNEQSILP 131
            DEP  D E E    +R    K    P K L    + +K+ +   S  K     E+++LP
Sbjct: 66  GDEPSSDGEAEEPRRKRRVVTKAYKEPLKSL----RPRKVSTPAGSSQK--AREEKALLP 119

Query: 132 -ENHDVPNDVEGERIIRKSTRTAVVVRQAERDAIRAALQATMKPIKRKKEGEEKRMTQEE 190
            E  D  +D       RKS R +    +  R       +   +  +RK    E+ +TQEE
Sbjct: 120 LELQDDGSDS------RKSMRQSTA--EHTRQTFLRVQERQGQSRRRKGPHCERPLTQEE 171

Query: 191 MLLEAAQTEIMNLRNLE 207
           +L EA  TE +NLR+LE
Sbjct: 172 LLREAKITEELNLRSLE 188

Could be a DNA-binding transcriptional regulator. May be involved in chromatin modification and remodeling.

Pongo abelii (taxid: 9601)

>sp|Q62481|VPS72_MOUSE Vacuolar protein sorting-associated protein 72 homolog OS=Mus musculus GN=Vps72 PE=2 SV=2

 Score = 57.8 bits (138), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 67/197 (34%), Positives = 94/197 (47%), Gaps = 21/197 (10%)

Query: 17  RSSRVTRGKRMNKLLDDENEEDEAFWNQ-DALKEEENDDNYEEEQ-EIADEFDSDFD--- 71
           R+ R T G R++ LL+ E EEDE +        EE  DD Y+ +Q +  DE DSDFD   
Sbjct: 7   RAPRKTAGNRLSGLLEAE-EEDEFYQTTYGGFTEESGDDEYQGDQSDTEDEVDSDFDIDE 65

Query: 72  EDEPEPDEEVENEVDERVWTKKRLIFPGKPLTKKKKKKKILSKLDSPDKDVKSNEQSILP 131
            DEP  D E E    +R    K    P K L    + +K+ +   S  K     E+++LP
Sbjct: 66  GDEPSSDGEAEEPRRKRRVVTKAYKEPLKSL----RPRKVSTPASSSQK--AREEKTLLP 119

Query: 132 -ENHDVPNDVEGERIIRKSTRTAVVVRQAERDAIRAALQATMKPIKRKKEGEEKRMTQEE 190
            E  D  +D       RKS R +    +  R       +   +  +RK    E+ +TQEE
Sbjct: 120 LELQDDGSDS------RKSMRQSTA--EHTRQTFLRVQERQGQSRRRKGPHCERPLTQEE 171

Query: 191 MLLEAAQTEIMNLRNLE 207
           +L EA  TE +NLR+LE
Sbjct: 172 LLREAKITEELNLRSLE 188

Could be a DNA-binding transcriptional regulator. May be involved in chromatin modification and remodeling.

Mus musculus (taxid: 10090)

>sp|Q6GNJ8|VPS72_XENLA Vacuolar protein sorting-associated protein 72 homolog OS=Xenopus laevis GN=vps72 PE=2 SV=1

 Score = 57.4 bits (137), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 66/224 (29%), Positives = 104/224 (46%), Gaps = 19/224 (8%)

Query: 17  RSSRVTRGKRMNKLLDDENEEDEAFWNQDALKEEENDDNYEEEQEIA-DEFDSDFDEDEP 75
           R+ R T G RM+ LL  E E+D          EE  D+ Y E++  + DE DSDFD D  
Sbjct: 7   RAPRKTAGNRMSGLLQAEEEDDFYKTTYGGFNEESGDEEYNEDRSASEDEVDSDFDID-- 64

Query: 76  EPDEEVENEVDERVWTKKRLIFPGKPLTKKKKKK-KILSKLDSPDKDVKSNEQSILPENH 134
           E DE   +  ++    K+R++      TK  K+  ++L       +   +      PE  
Sbjct: 65  EGDEPTSDHEEDEPKKKRRVV------TKAYKEPIQLLKPKPKKPEAPPNTAAKSRPEKP 118

Query: 135 DVPND--VEGERIIRKSTRTAVVVRQAERDAIRAALQATMKPIKRKKEGEEKRMTQEEML 192
             P D  V+  + +R+ST       +  R       +  ++  K+K    ++ +TQEE+L
Sbjct: 119 QEPPDDTVDSRKQMRQST------TEHTRQTFLRVKERQIQSKKKKGPHLDRPLTQEELL 172

Query: 193 LEAAQTEIMNLRNLERVLAREEEVKKRAIVHKAVYTGPQLRYLS 236
            EA  TE +N+R+LE    R E  +K+ +  K    GP +RY S
Sbjct: 173 EEAKITEEINIRSLEN-YERLEADRKKQVHKKRRCAGPTIRYHS 215

Could be a DNA-binding transcriptional regulator. May be involved in chromatin modification and remodeling.

Xenopus laevis (taxid: 8355)

>sp|Q15906|VPS72_HUMAN Vacuolar protein sorting-associated protein 72 homolog OS=Homo sapiens GN=VPS72 PE=1 SV=1

 Score = 57.4 bits (137), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 67/197 (34%), Positives = 94/197 (47%), Gaps = 21/197 (10%)

Query: 17  RSSRVTRGKRMNKLLDDENEEDEAFWNQ-DALKEEENDDNYEEEQ-EIADEFDSDFD--- 71
           R+ R T G R++ LL+ E EEDE +        EE  DD Y+ +Q +  DE DSDFD   
Sbjct: 7   RAPRKTAGNRLSGLLEAE-EEDEFYQTTYGGFTEESGDDEYQGDQSDTEDEVDSDFDIDE 65

Query: 72  EDEPEPDEEVENEVDERVWTKKRLIFPGKPLTKKKKKKKILSKLDSPDKDVKSNEQSILP 131
            DEP  D E E    +R    K    P K L    + +K+ +   S  K     E+++LP
Sbjct: 66  GDEPSSDGEAEEPRRKRRVVTKAYKEPLKSL----RPRKVNTPAGSSQK--AREEKALLP 119

Query: 132 -ENHDVPNDVEGERIIRKSTRTAVVVRQAERDAIRAALQATMKPIKRKKEGEEKRMTQEE 190
            E  D  +D       RKS R +    +  R       +   +  +RK    E+ +TQEE
Sbjct: 120 LELQDDGSDS------RKSMRQSTA--EHTRQTFLRVQERQGQSRRRKGPHCERPLTQEE 171

Query: 191 MLLEAAQTEIMNLRNLE 207
           +L EA  TE +NLR+LE
Sbjct: 172 LLREAKITEELNLRSLE 188

Could be a DNA-binding transcriptional regulator. May be involved in chromatin modification and remodeling.

Homo sapiens (taxid: 9606)

>sp|Q9VKM6|VPS72_DROME Vacuolar protein sorting-associated protein 72 homolog OS=Drosophila melanogaster GN=YL-1 PE=1 SV=1

 Score = 55.1 bits (131), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 84/337 (24%), Positives = 132/337 (39%), Gaps = 70/337 (20%)

Query: 17  RSSRVTRGKRMNKLLDDENEEDEAFWNQDALKEEENDDNYEEEQEIADEFDSDF---DED 73
           RS R   G ++  LL++E E+D    +    +E+E D  YE++ E  D  DSDF   + D
Sbjct: 5   RSRRNNAGNKIAHLLNEEEEDDFYKTSYGGFQEDEEDKEYEQKDEEEDVVDSDFSIDEND 64

Query: 74  EPEPDEEVENEVDERVWTKKRLIFPGKPLTKKKKKKKILSKLDSPDKDVKSNEQSILPEN 133
           EP  D+E   E                   KK+K+  + +K     K     E    P  
Sbjct: 65  EPVSDQEEAPE-------------------KKRKRGVVNTKAYKETKPAVKKETKATPAL 105

Query: 134 HDVPNDVEGERIIRKSTRTAVVVRQAERDAIRAA----LQATMKPIK----------RKK 179
           H       G  + ++  R    V  + R +IR +     QAT   +K          +K 
Sbjct: 106 H---KKRPGGGVTKRRPRPRFTVLDSGRKSIRTSTAIKTQATKIRLKELDDARKRKKKKV 162

Query: 180 EGEEKRMTQEEMLLEAAQTEIMNLRNLERVLAREEEVKKRAIVHKAVYTGPQLRYLSKDG 239
             E+   TQEE+L EA  TE  N ++LE+    E E KK++   K  ++GP +RY S   
Sbjct: 163 RVEDYMPTQEELLEEAKITEEENTKSLEKFQKMELE-KKKSRPTKRTFSGPTIRYHSLTM 221

Query: 240 YSYLEFSKGVS---------------------------FQSELSTTSVPYPERAVCAVTG 272
            +  + ++G +                           FQS     + P     +C +T 
Sbjct: 222 PAMRKPTRGANPAVDSKDLAGKCERTFVTIENDFNDKVFQSLFRHKAPPKASNGICPITR 281

Query: 273 LPAKN---TMKRTTIATEEFILLWTMTVSNLLQIGVG 306
           LPA+      ++   + + F +L       L Q G G
Sbjct: 282 LPARYFDPITQQPYYSIQAFKILREAYYMQLEQQGGG 318

Part of the Tip60 chromatin-remodeling complex which is involved in DNA repair. Upon induction of DNA double-strand breaks, this complex acetylates phosphorylated H2AV in nucleosomes and exchanges it with unmodified H2AV.

Drosophila melanogaster (taxid: 7227)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	307
312283487	366	unnamed protein product [Thellungiella h	0.879	0.737	0.707	1e-100
255557925	357	DNA binding protein, putative [Ricinus c	0.908	0.781	0.790	6e-99
297827167	364	DNA binding protein [Arabidopsis lyrata	0.879	0.741	0.694	1e-97
225454872	356	PREDICTED: vacuolar protein sorting-asso	0.879	0.758	0.789	8e-95
79568513	365	vacuolar protein sorting-associated prot	0.872	0.734	0.693	6e-93
167600634	359	hypothetical protein 46C02.2 [Coffea can	0.895	0.766	0.740	7e-93
110743723	365	hypothetical protein [Arabidopsis thalia	0.872	0.734	0.689	3e-92
356512253	355	PREDICTED: vacuolar protein sorting-asso	0.863	0.746	0.711	4e-92
449451840	356	PREDICTED: vacuolar protein sorting-asso	0.882	0.761	0.753	5e-92
413941583	360	vacuolar protein sorting protein 72 [Zea	0.882	0.752	0.647	1e-90

>gi|312283487|dbj|BAJ34609.1| unnamed protein product [Thellungiella halophila]

 Score =  370 bits (951), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 196/277 (70%), Positives = 225/277 (81%), Gaps = 7/277 (2%)

Query: 6   SSKEDAPVFLDRSSRVTRGKRMNKLLDDENEEDEAFWNQDALKEEENDDNYEEEQEIADE 65
           S KE+  VFLDR++R TRGKRM KLLDDE EEDE FWNQ+ALKEEE+DDNYE E E+ADE
Sbjct: 3   SDKEEQMVFLDRTTRATRGKRMTKLLDDEVEEDEQFWNQEALKEEEHDDNYEAEAEVADE 62

Query: 66  FDSDFDEDEPEPDEEVENEVDERVWTKKRLIFPGKPLTKKKKKKKILSKLD------SPD 119
           FDSDF++DEPEPD   ENE +ER   KKRLI+PGK   KKKKKKK++S L+       P 
Sbjct: 63  FDSDFNDDEPEPDAVAENEKEERDMPKKRLIYPGKTAPKKKKKKKLVSTLEDTLEGEKPG 122

Query: 120 KDVKSNEQSILPENHDVPNDVEGERIIRKSTRTAVVVRQAERDAIRAALQATMKPIKRKK 179
            +V   EQ    E ++   D+E E++IRKSTRT+V+VRQAERDA+RAA+QAT KPI+RKK
Sbjct: 123 DEVGDKEQD-GKEQNEAQEDMESEKVIRKSTRTSVIVRQAERDALRAAIQATTKPIQRKK 181

Query: 180 EGEEKRMTQEEMLLEAAQTEIMNLRNLERVLAREEEVKKRAIVHKAVYTGPQLRYLSKDG 239
            GEEKRMTQEEMLLEAAQTEIMNLRNLERVLAREEEVKK+AIVHK VY GPQ+RYLSKDG
Sbjct: 182 VGEEKRMTQEEMLLEAAQTEIMNLRNLERVLAREEEVKKKAIVHKVVYKGPQIRYLSKDG 241

Query: 240 YSYLEFSKGVSFQSELSTTSVPYPERAVCAVTGLPAK 276
            +YLEF  G SF SELST SVPYPE+AVC +TGLPAK
Sbjct: 242 CNYLEFCNGASFSSELSTKSVPYPEKAVCVITGLPAK 278

Source: Thellungiella halophila

Species: Eutrema halophilum

Genus: Eutrema

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255557925|ref|XP_002519991.1| DNA binding protein, putative [Ricinus communis] gi|223540755|gb|EEF42315.1| DNA binding protein, putative [Ricinus communis]

 Score =  366 bits (940), Expect = 6e-99,   Method: Compositional matrix adjust.
 Identities = 222/281 (79%), Positives = 247/281 (87%), Gaps = 2/281 (0%)

Query: 6   SSKEDAP-VFLDRSSRVTRGKRMNKLLDDENEEDEAFWNQDALKEEENDDNYEEEQEIAD 64
           S +EDA  VFLDR+SR TRGKRMNKLLD+E EEDE FW+QDALKEEEND+NYE EQE+AD
Sbjct: 4   SKEEDASIVFLDRASRQTRGKRMNKLLDEEIEEDELFWSQDALKEEENDNNYEAEQEVAD 63

Query: 65  EFDSDFDEDEPEPDEEVENEVDERVWTKKRLIFPGKPLTKKKKKKKILSKLDSPDKDVKS 124
           EFDSDFD+DE EPDEE E+   ER  TKKRLI+PGKP TKKKKKKK+LSKLD P KD K+
Sbjct: 64  EFDSDFDDDESEPDEEAEDVPSERKQTKKRLIYPGKPSTKKKKKKKVLSKLDRPSKDEKT 123

Query: 125 NEQSILPENHDVPNDVEGERIIRKSTRTAVVVRQAERDAIRAALQATMKPIKRKKEGEEK 184
            E+S  PE+ DV +DVEGERI+RKSTRT+V+V+QAERDAIRAALQATMKPIKRKKEGEEK
Sbjct: 124 AEESSAPEHRDVSDDVEGERIVRKSTRTSVIVKQAERDAIRAALQATMKPIKRKKEGEEK 183

Query: 185 RMTQEEMLLEAAQTEIMNLRNLERVLAREEEVKKRAIVHKAVYTGPQLRYLSKDGYSYLE 244
           RMTQEEMLLEAAQTEIMNLRNLERVLAREEEVKKRAIVHKAVY GPQ+RY SKDG SYLE
Sbjct: 184 RMTQEEMLLEAAQTEIMNLRNLERVLAREEEVKKRAIVHKAVYNGPQIRYFSKDGCSYLE 243

Query: 245 FSKGVSFQSELSTTSVPYPERAVCAVTGLPAKNTMKRTTIA 285
           F KGVSF+SE+S  SVPYPE+AVCA+TGLPAK    +T +A
Sbjct: 244 F-KGVSFRSEISVASVPYPEKAVCAITGLPAKYRDPKTGLA 283

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297827167|ref|XP_002881466.1| DNA binding protein [Arabidopsis lyrata subsp. lyrata] gi|297327305|gb|EFH57725.1| DNA binding protein [Arabidopsis lyrata subsp. lyrata]

 Score =  362 bits (929), Expect = 1e-97,   Method: Compositional matrix adjust.
 Identities = 193/278 (69%), Positives = 225/278 (80%), Gaps = 8/278 (2%)

Query: 6   SSKEDAPVFLDRSSRVTRGKRMNKLLDDENEEDEAFWNQDALKEEENDDNYEEEQEIADE 65
           S KE+  VFLDR++R TRGKRM KLLDDE EEDE FWNQ+ALKEEE+DD YE E+E+ADE
Sbjct: 3   SDKEEPMVFLDRTTRATRGKRMTKLLDDEVEEDEQFWNQEALKEEEHDDEYEAEREVADE 62

Query: 66  FDSDFDEDEPEPDEEVENEVDERVWTKKRLIFPGKPLTKKKKKKKILSKL-------DSP 118
           FDSDF++DEPEPD   +NE +ER   KKRLI+PGK  +KKKKKK  +          + P
Sbjct: 63  FDSDFNDDEPEPDAVAQNEKEERDLPKKRLIYPGKIASKKKKKKTKVVSKLQDIPGDEKP 122

Query: 119 DKDVKSNEQSILPENHDVPNDVEGERIIRKSTRTAVVVRQAERDAIRAALQATMKPIKRK 178
            +++ S EQ    EN +   D+EGE++IRKSTRT+VVVRQAERDA+RAA+QAT KPI+RK
Sbjct: 123 GEELGSKEQDEKEEN-EAQEDMEGEKVIRKSTRTSVVVRQAERDALRAAIQATTKPIQRK 181

Query: 179 KEGEEKRMTQEEMLLEAAQTEIMNLRNLERVLAREEEVKKRAIVHKAVYTGPQLRYLSKD 238
           K GEEKRMTQEEMLLEAAQTEIMNLRNLERVLAREEEVKK+AIVHKAVY GPQ+RY SKD
Sbjct: 182 KVGEEKRMTQEEMLLEAAQTEIMNLRNLERVLAREEEVKKKAIVHKAVYKGPQIRYHSKD 241

Query: 239 GYSYLEFSKGVSFQSELSTTSVPYPERAVCAVTGLPAK 276
           G +YLEF  G SF SELST SVPYPE+A+C +TGLPAK
Sbjct: 242 GCNYLEFCNGASFNSELSTKSVPYPEKALCVITGLPAK 279

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225454872|ref|XP_002275587.1| PREDICTED: vacuolar protein sorting-associated protein 72 homolog [Vitis vinifera] gi|297737375|emb|CBI26576.3| unnamed protein product [Vitis vinifera]

 Score =  353 bits (905), Expect = 8e-95,   Method: Compositional matrix adjust.
 Identities = 214/271 (78%), Positives = 246/271 (90%), Gaps = 1/271 (0%)

Query: 6   SSKEDAPVFLDRSSRVTRGKRMNKLLDDENEEDEAFWNQDALKEEENDDNYEEEQEIADE 65
           +SK + PV LDR+SR+TRGKRMNKLLD+E E+D+ FWNQDALKEEEND NYEEE E+ADE
Sbjct: 3   TSKAEEPVVLDRASRITRGKRMNKLLDEEVEQDDYFWNQDALKEEENDVNYEEEAEVADE 62

Query: 66  FDSDFDEDEPEPDEEVENEVDERVWTKKRLIFPGKPLTKKKKKKKILSKLDSPDKDVKSN 125
           FDSDFDEDEPEPDEEVEN+ D+R  TKKRL +PGK L KKKKKK +LS L+   KD K++
Sbjct: 63  FDSDFDEDEPEPDEEVENDADDRPRTKKRLSYPGKTLAKKKKKK-VLSNLERVTKDEKTS 121

Query: 126 EQSILPENHDVPNDVEGERIIRKSTRTAVVVRQAERDAIRAALQATMKPIKRKKEGEEKR 185
            +S +PEN++VP+D+E ERI+RKSTRT+V+VRQAERDAIRAALQATMKPIKRKKEGEEK+
Sbjct: 122 PESTVPENNEVPDDLEVERIVRKSTRTSVIVRQAERDAIRAALQATMKPIKRKKEGEEKK 181

Query: 186 MTQEEMLLEAAQTEIMNLRNLERVLAREEEVKKRAIVHKAVYTGPQLRYLSKDGYSYLEF 245
           MTQEEMLLEAAQTEI+NLRNLERVLAREEEVKKRAIVHK+VY+GPQ+RY SK+G SYLEF
Sbjct: 182 MTQEEMLLEAAQTEIINLRNLERVLAREEEVKKRAIVHKSVYSGPQIRYSSKNGCSYLEF 241

Query: 246 SKGVSFQSELSTTSVPYPERAVCAVTGLPAK 276
           SKG+SFQSELS TSVPYPE+AVCAVTGLPAK
Sbjct: 242 SKGLSFQSELSATSVPYPEKAVCAVTGLPAK 272

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|79568513|ref|NP_181212.2| vacuolar protein sorting-associated protein 72 [Arabidopsis thaliana] gi|330254199|gb|AEC09293.1| vacuolar protein sorting-associated protein 72 [Arabidopsis thaliana]

 Score =  346 bits (888), Expect = 6e-93,   Method: Compositional matrix adjust.
 Identities = 190/274 (69%), Positives = 220/274 (80%), Gaps = 6/274 (2%)

Query: 9   EDAPVFLDRSSRVTRGKRMNKLLDDENEEDEAFWNQDALKEEENDDNYEEEQEIADEFDS 68
           E+  VFLDR++R TRGKRM KLLDDE EEDE FWNQ+ALKEEE+DD YE E+E+ADEFDS
Sbjct: 6   EEPMVFLDRTTRATRGKRMTKLLDDEVEEDEQFWNQEALKEEEHDDEYEAEREVADEFDS 65

Query: 69  DFDEDEPEPDEEVENEVDERVWTKKRLIFPGKPLTKKKKKKKILS-KLDSPDKDVKSNEQ 127
           DF++DEPEPD    NE + R   KKRLI+PGK  +KKKKKK  +  +L+    D K  E+
Sbjct: 66  DFNDDEPEPDAVAVNEKELRDLPKKRLIYPGKTASKKKKKKTKVVSQLEYIPGDEKPGEE 125

Query: 128 -----SILPENHDVPNDVEGERIIRKSTRTAVVVRQAERDAIRAALQATMKPIKRKKEGE 182
                    E ++   D+EGE++IRKSTRT+VVVRQAERDA+RAA+QAT KPI+RKK GE
Sbjct: 126 LGNKEQEEKEENEAQEDMEGEKVIRKSTRTSVVVRQAERDALRAAIQATTKPIQRKKVGE 185

Query: 183 EKRMTQEEMLLEAAQTEIMNLRNLERVLAREEEVKKRAIVHKAVYTGPQLRYLSKDGYSY 242
           EKRMTQEEMLLEAAQTEIMNLRNLERVLAREEEVKK+AIVHKAVY GPQ+RY SKDG +Y
Sbjct: 186 EKRMTQEEMLLEAAQTEIMNLRNLERVLAREEEVKKKAIVHKAVYKGPQIRYHSKDGCNY 245

Query: 243 LEFSKGVSFQSELSTTSVPYPERAVCAVTGLPAK 276
           LEF  G SF SELST SVPYPE+AVC +TGLPAK
Sbjct: 246 LEFCNGASFNSELSTKSVPYPEKAVCVITGLPAK 279

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|167600634|gb|ABZ89176.1| hypothetical protein 46C02.2 [Coffea canephora]

 Score =  346 bits (888), Expect = 7e-93,   Method: Compositional matrix adjust.
 Identities = 205/277 (74%), Positives = 237/277 (85%), Gaps = 2/277 (0%)

Query: 1   METGTSSKEDAP-VFLDRSSRVTRGKRMNKLLDDENEEDEAFWNQDALKEEENDDNYEEE 59
           METG   KE    VFLDR+SR TRGKRM KLLDDE EEDEAFWNQDALKEEE+DD YEEE
Sbjct: 1   METGKEEKEKETLVFLDRASRATRGKRMTKLLDDEVEEDEAFWNQDALKEEEHDDVYEEE 60

Query: 60  QEIADEFDSDFDEDEPEPDEEVENEVDERVWTKKRLIFPGKPLTKKKKKKKILSKLDSPD 119
            E+AD FDSDFDEDEPEPDEEVENE D+R   KKRLIFPGK ++K KKKK++      P 
Sbjct: 61  AEVADVFDSDFDEDEPEPDEEVENEPDDRTRPKKRLIFPGKTISKNKKKKRVHKSERVP- 119

Query: 120 KDVKSNEQSILPENHDVPNDVEGERIIRKSTRTAVVVRQAERDAIRAALQATMKPIKRKK 179
           ++ +++EQS  PE+HD P DVE ER IRKSTRT+V+V+QAER+AI+AALQAT++PIK+KK
Sbjct: 120 REERTSEQSTPPEHHDAPEDVEVERTIRKSTRTSVIVKQAEREAIQAALQATIRPIKKKK 179

Query: 180 EGEEKRMTQEEMLLEAAQTEIMNLRNLERVLAREEEVKKRAIVHKAVYTGPQLRYLSKDG 239
           EGEEKRMTQEEMLLEAAQTEIMNLRNLERVLAREEEVKKRA+VHKAVYTGPQ+RYLS++G
Sbjct: 180 EGEEKRMTQEEMLLEAAQTEIMNLRNLERVLAREEEVKKRAVVHKAVYTGPQIRYLSRNG 239

Query: 240 YSYLEFSKGVSFQSELSTTSVPYPERAVCAVTGLPAK 276
            S+LE+  G SF+SE+ST S PY E+A+CAVTGLPAK
Sbjct: 240 SSFLEYMNGASFESEISTESHPYAEKAICAVTGLPAK 276

Source: Coffea canephora

Species: Coffea canephora

Genus: Coffea

Family: Rubiaceae

Order: Gentianales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|110743723|dbj|BAE99698.1| hypothetical protein [Arabidopsis thaliana]

 Score =  344 bits (883), Expect = 3e-92,   Method: Compositional matrix adjust.
 Identities = 189/274 (68%), Positives = 220/274 (80%), Gaps = 6/274 (2%)

Query: 9   EDAPVFLDRSSRVTRGKRMNKLLDDENEEDEAFWNQDALKEEENDDNYEEEQEIADEFDS 68
           E+  VFLDR++R TRGKRM KLLDDE EEDE FWNQ+ALKEEE+DD YE E+E+ADEFDS
Sbjct: 6   EEPMVFLDRTTRATRGKRMTKLLDDEVEEDEQFWNQEALKEEEHDDEYEAEREVADEFDS 65

Query: 69  DFDEDEPEPDEEVENEVDERVWTKKRLIFPGKPLTKKKKKKKILS-KLDSPDKDVKSNEQ 127
           DF++DEPEPD    NE + R   KKRLI+PGK  +KKKKKK  +  +L+    D K  E+
Sbjct: 66  DFNDDEPEPDAVAVNEKELRDLPKKRLIYPGKTASKKKKKKTKVVSQLEYIPGDEKPGEE 125

Query: 128 -----SILPENHDVPNDVEGERIIRKSTRTAVVVRQAERDAIRAALQATMKPIKRKKEGE 182
                    E ++   D+EGE++IRKSTRT+VVVRQAERDA+RAA+QAT KPI+RKK GE
Sbjct: 126 LGNKEQEEKEENEAQEDMEGEKVIRKSTRTSVVVRQAERDALRAAIQATTKPIQRKKVGE 185

Query: 183 EKRMTQEEMLLEAAQTEIMNLRNLERVLAREEEVKKRAIVHKAVYTGPQLRYLSKDGYSY 242
           EKR+TQEEMLLEAAQTEIMNLRNLERVLAREEEVKK+AIVHKAVY GPQ+RY SKDG +Y
Sbjct: 186 EKRVTQEEMLLEAAQTEIMNLRNLERVLAREEEVKKKAIVHKAVYKGPQIRYHSKDGCNY 245

Query: 243 LEFSKGVSFQSELSTTSVPYPERAVCAVTGLPAK 276
           LEF  G SF SELST SVPYPE+AVC +TGLPAK
Sbjct: 246 LEFCNGASFNSELSTKSVPYPEKAVCVITGLPAK 279

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356512253|ref|XP_003524835.1| PREDICTED: vacuolar protein sorting-associated protein 72 homolog [Glycine max]

 Score =  344 bits (882), Expect = 4e-92,   Method: Compositional matrix adjust.
 Identities = 195/274 (71%), Positives = 223/274 (81%), Gaps = 9/274 (3%)

Query: 6   SSKEDAPVFLDRSSRVTRGKRMNKLLDDENEEDEAFWNQDALKEEENDDNYEEEQEIADE 65
            S ED  V LDR+SR TRGKR+ KLLDDE +EDE FWNQDALKE+E DDNY+EE EIADE
Sbjct: 3   GSGEDV-VLLDRASRATRGKRLTKLLDDEIQEDELFWNQDALKEDEEDDNYQEEPEIADE 61

Query: 66  FDSDFDEDEPEPDEEV---ENEVDERVWTKKRLIFPGKPLTKKKKKKKILSKLDSPDKDV 122
           FDSDFD+DEP P+EE    +N+ DER+  KKRLIFPGK L KKKKKKK +SKL+S  K+ 
Sbjct: 62  FDSDFDQDEPVPEEEEDPNKNDDDERMHKKKRLIFPGKTLAKKKKKKKTISKLESSPKEN 121

Query: 123 KSNEQSILPENHDVPNDVEGERIIRKSTRTAVVVRQAERDAIRAALQATMKPIKRKKEGE 182
           +  E S       V  D  GER+IRKSTRT+V+VRQAERDAIRAALQAT+KP+KRKKEGE
Sbjct: 122 EDEEHS-----GKVVEDEGGERMIRKSTRTSVIVRQAERDAIRAALQATIKPVKRKKEGE 176

Query: 183 EKRMTQEEMLLEAAQTEIMNLRNLERVLAREEEVKKRAIVHKAVYTGPQLRYLSKDGYSY 242
           EKRMTQEEMLLEAAQTEIMNLRNLERVLAREEEVK+RAIVHK V+ GPQ+RY+SK+G SY
Sbjct: 177 EKRMTQEEMLLEAAQTEIMNLRNLERVLAREEEVKRRAIVHKTVFNGPQIRYISKNGTSY 236

Query: 243 LEFSKGVSFQSELSTTSVPYPERAVCAVTGLPAK 276
           LEF KG SF S++ T  V YPE+ VC +TGLPAK
Sbjct: 237 LEFIKGSSFHSDIPTAPVQYPEQPVCPITGLPAK 270

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449451840|ref|XP_004143668.1| PREDICTED: vacuolar protein sorting-associated protein 72 homolog [Cucumis sativus]

 Score =  343 bits (880), Expect = 5e-92,   Method: Compositional matrix adjust.
 Identities = 205/272 (75%), Positives = 235/272 (86%), Gaps = 1/272 (0%)

Query: 5   TSSKEDAPVFLDRSSRVTRGKRMNKLLDDENEEDEAFWNQDALKEEENDDNYEEEQEIAD 64
           +S +ED PVFLDRSSR+TRGKRM KLLD+E EEDE FWNQDAL+E+E DD YEEE E+ D
Sbjct: 3   SSKEEDVPVFLDRSSRMTRGKRMTKLLDEEAEEDELFWNQDALREDEVDDEYEEEPEVVD 62

Query: 65  EFDSDFDEDEPEPDEEVENEVDERVWTKKRLIFPGKPLTKKKKKKKILSKLDSPDKDVKS 124
           EFDSDF+EDE EP+EE ENE DER   KKRLIFPGK  +K K KK+ +SK++ P KD  S
Sbjct: 63  EFDSDFNEDESEPEEEAENEADERPQMKKRLIFPGK-TSKNKNKKRAVSKVEKPSKDEAS 121

Query: 125 NEQSILPENHDVPNDVEGERIIRKSTRTAVVVRQAERDAIRAALQATMKPIKRKKEGEEK 184
            +QS  PE+HD P+D E ER +RKSTRT+V+VRQAERDAIRAALQATMKPIKRK  GEEK
Sbjct: 122 TDQSTPPEHHDTPDDTEVERTVRKSTRTSVIVRQAERDAIRAALQATMKPIKRKNPGEEK 181

Query: 185 RMTQEEMLLEAAQTEIMNLRNLERVLAREEEVKKRAIVHKAVYTGPQLRYLSKDGYSYLE 244
           +M+QEEMLLEAAQTEIMNLRNLERVLAREEEVKKRAIVHKAVY GP+++YLS++G SYLE
Sbjct: 182 KMSQEEMLLEAAQTEIMNLRNLERVLAREEEVKKRAIVHKAVYNGPRIQYLSRNGCSYLE 241

Query: 245 FSKGVSFQSELSTTSVPYPERAVCAVTGLPAK 276
           FSKG SFQ+ELSTTSVPYPE+AVC +TGLPAK
Sbjct: 242 FSKGSSFQAELSTTSVPYPEKAVCVITGLPAK 273

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|413941583|gb|AFW74232.1| vacuolar protein sorting protein 72 [Zea mays]

 Score =  339 bits (869), Expect = 1e-90,   Method: Compositional matrix adjust.
 Identities = 176/272 (64%), Positives = 211/272 (77%), Gaps = 1/272 (0%)

Query: 6   SSKEDAPVFLDRSSRVTRGKRMNKLLDDENEEDEAFWNQDALKEEENDDNYEEEQEIADE 65
           +  ++ PV LDR++R +RGKR+ KLL+DE E+DEAFWNQ+ALK+EENDDNY EE +  DE
Sbjct: 3   AGDDEPPVLLDRAARASRGKRITKLLEDEVEQDEAFWNQEALKDEENDDNYVEEPDAGDE 62

Query: 66  FDSDFDEDEPEPDEEVENEVDERVWTKKRLIFPGKPLTKKK-KKKKILSKLDSPDKDVKS 124
           FDSDF EDE E D+E E EV ER+  KKRL+FPGK L K   KKKK   K +   K  KS
Sbjct: 63  FDSDFGEDESETDDEPEKEVRERLPIKKRLMFPGKTLRKTNVKKKKATPKPEDGTKADKS 122

Query: 125 NEQSILPENHDVPNDVEGERIIRKSTRTAVVVRQAERDAIRAALQATMKPIKRKKEGEEK 184
            ++       D+P+++E E+ IRKSTRT+V+VRQAER+AIRA  +AT KPIKRKKEGEEK
Sbjct: 123 ADKPSSSTQADLPDELEAEKAIRKSTRTSVIVRQAEREAIRAEKEATAKPIKRKKEGEEK 182

Query: 185 RMTQEEMLLEAAQTEIMNLRNLERVLAREEEVKKRAIVHKAVYTGPQLRYLSKDGYSYLE 244
           RMTQEEMLLEAA+TEIMN+RNLERVLAREEEVKK+A+VHK  Y GP +R+ S+DG S LE
Sbjct: 183 RMTQEEMLLEAAETEIMNMRNLERVLAREEEVKKKAVVHKDTYEGPTIRFFSRDGESRLE 242

Query: 245 FSKGVSFQSELSTTSVPYPERAVCAVTGLPAK 276
           F  G SF SEL TTS PYPE+ VC VTGLPAK
Sbjct: 243 FINGASFGSELCTTSSPYPEKPVCVVTGLPAK 274

Source: Zea mays

Species: Zea mays

Genus: Zea

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	307
TAIR|locus:2040580	365	SWC2 "AT2G36740" [Arabidopsis	0.876	0.736	0.541	6.5e-67
ZFIN|ZDB-GENE-060503-88	369	vps72 "vacuolar protein sortin	0.335	0.279	0.333	5.4e-06
FB|FBgn0032321	351	YL-1 "YL-1" [Drosophila melano	0.286	0.250	0.373	1.6e-05
UNIPROTKB|H9KYW9	366	LOC100859689 "Uncharacterized	0.342	0.286	0.350	0.00011
DICTYBASE|DDB_G0293512	508	DDB_G0293512 "Vacuolar protein	0.208	0.125	0.375	0.00013
ZFIN|ZDB-GENE-100922-13	335	si:ch211-203d17.1 "si:ch211-20	0.312	0.286	0.33	0.00032

TAIR|locus:2040580 SWC2 "AT2G36740" [Arabidopsis thaliana (taxid:3702)]

 Score = 680 (244.4 bits), Expect = 6.5e-67, P = 6.5e-67
 Identities = 149/275 (54%), Positives = 173/275 (62%)

Query:     8 KEDAPVFLDRSSRVTRGKRMNKLLXXXXXXXXAFWNQDALKXXXXXXXXXXXXXIAXXXX 67
             +E+  VFLDR++R TRGKRM KLL         FWNQ+ALK             +A    
Sbjct:     5 EEEPMVFLDRTTRATRGKRMTKLLDDEVEEDEQFWNQEALKEEEHDDEYEAEREVADEFD 64

Query:    68 XXXXXXXXXXXXXXXXXXXXRVWTKKRLIFPGXXXXXXXXXXXXXXXXXXXXXXVKS--- 124
                                 R   KKRLI+PG                       +    
Sbjct:    65 SDFNDDEPEPDAVAVNEKELRDLPKKRLIYPGKTASKKKKKKTKVVSQLEYIPGDEKPGE 124

Query:   125 ---NEQSILPENHDVPNDVEGERIIRKSTRTAVVVRQAERDAIRAALQATMKPIKRKKEG 181
                N++    E ++   D+EGE++IRKSTRT+VVVRQAERDA+RAA+QAT KPI+RKK G
Sbjct:   125 ELGNKEQEEKEENEAQEDMEGEKVIRKSTRTSVVVRQAERDALRAAIQATTKPIQRKKVG 184

Query:   182 EEKRMTQEEMLLEAAQTEIMNLRNLERVLAREEEVKKRAIVHKAVYTGPQLRYLSKDGYS 241
             EEKRMTQEEMLLEAAQTEIMNLRNLERVLAREEEVKK+AIVHKAVY GPQ+RY SKDG +
Sbjct:   185 EEKRMTQEEMLLEAAQTEIMNLRNLERVLAREEEVKKKAIVHKAVYKGPQIRYHSKDGCN 244

Query:   242 YLEFSKGVSFQSELSTTSVPYPERAVCAVTGLPAK 276
             YLEF  G SF SELST SVPYPE+AVC +TGLPAK
Sbjct:   245 YLEFCNGASFNSELSTKSVPYPEKAVCVITGLPAK 279

GO:0003677 "DNA binding" evidence=ISS

GO:0005634 "nucleus" evidence=ISM;IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0006338 "chromatin remodeling" evidence=RCA

GO:0008284 "positive regulation of cell proliferation" evidence=RCA

GO:0009909 "regulation of flower development" evidence=RCA

GO:0042742 "defense response to bacterium" evidence=RCA

ZFIN|ZDB-GENE-060503-88 vps72 "vacuolar protein sorting 72 homolog (S. cerevisiae)" [Danio rerio (taxid:7955)]

 Score = 110 (43.8 bits), Expect = 5.4e-06, Sum P(3) = 5.4e-06
 Identities = 35/105 (33%), Positives = 52/105 (49%)

Query:   132 ENHDVPNDVEGERIIRKSTRTAVVVRQAERDAIRAALQATMKPIKRKKEGEEKRMTQEEM 191
             E   V ++++    IRKS R +      + +  R   +    P KRK    E+ +TQ+E+
Sbjct:   115 ERRTVRDELQDLGDIRKSVRKSTSEHTRKTNE-RLQERQQEAPRKRKGAQSERVLTQDEL 173

Query:   192 LLEAAQTEIMNLRNLERVLAREEEVKKRAIVHKAVYTGPQLRYLS 236
             L EA  T   NLR+LE    R E  KK+ +  K  + GP +RY S
Sbjct:   174 LDEAKLTAESNLRSLENY-ERLEADKKKQVHKKRRFEGPMIRYHS 217

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

FB|FBgn0032321 YL-1 "YL-1" [Drosophila melanogaster (taxid:7227)]

 Score = 116 (45.9 bits), Expect = 1.6e-05, Sum P(2) = 1.6e-05
 Identities = 34/91 (37%), Positives = 51/91 (56%)

Query:   147 RKSTRTAVVVR-QAERDAIRAALQATMKPIKRKKEGEEKRMTQEEMLLEAAQTEIMNLRN 205
             RKS RT+  ++ QA +  ++  L    K  K+K   E+   TQEE+L EA  TE  N ++
Sbjct:   130 RKSIRTSTAIKTQATKIRLKE-LDDARKRKKKKVRVEDYMPTQEELLEEAKITEEENTKS 188

Query:   206 LERVLAREEEVKKRAIVHKAVYTGPQLRYLS 236
             LE+    E E KK++   K  ++GP +RY S
Sbjct:   189 LEKFQKMELE-KKKSRPTKRTFSGPTIRYHS 218

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0004402 "histone acetyltransferase activity" evidence=IDA

GO:0005634 "nucleus" evidence=IDA

GO:0016573 "histone acetylation" evidence=IDA

GO:0043486 "histone exchange" evidence=IDA

GO:0035267 "NuA4 histone acetyltransferase complex" evidence=IPI

GO:0010629 "negative regulation of gene expression" evidence=IMP

UNIPROTKB|H9KYW9 LOC100859689 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 108 (43.1 bits), Expect = 0.00011, Sum P(2) = 0.00011
 Identities = 41/117 (35%), Positives = 57/117 (48%)

Query:   123 KSNEQSILP-ENHDVPNDVEGERIIRKSTRTAVVVRQAERDAIRAALQATMKPIKRKKEG 181
             K+ E    P E  D   D  G + +R+ST          +  +R  +Q      KRKK G
Sbjct:   110 KAREVKSAPLELQDEVADT-GRKHMRQST-----TEHTRQTFLR--IQERQVQSKRKKGG 161

Query:   182 E--EKRMTQEEMLLEAAQTEIMNLRNLERVLAREEEVKKRAIVHKAVYTGPQLRYLS 236
                ++ +TQEE+L EA  TE +NLR+LE    R E  KK+ +  K    GP +RY S
Sbjct:   162 PNYDRPLTQEELLEEAKITEEINLRSLENY-ERLEADKKKQVQKKRKCVGPVIRYWS 217

GO:0005634 "nucleus" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0035019 "somatic stem cell maintenance" evidence=IEA

GO:0043234 "protein complex" evidence=IEA

DICTYBASE|DDB_G0293512 DDB_G0293512 "Vacuolar protein sorting-associated protein 72" [Dictyostelium discoideum (taxid:44689)]

 Score = 110 (43.8 bits), Expect = 0.00013, Sum P(3) = 0.00013
 Identities = 24/64 (37%), Positives = 38/64 (59%)

Query:   186 MTQEEMLLEAAQTEIMNLRNLERVLAREEEVKKRAIVHKAVYTGPQLRYLSKDGYSYLEF 245
             +TQEE+L E  +TEI N  +L  +L +EE+ KK     KA+ TGP++ Y S    + + F
Sbjct:   268 LTQEELLEECKETEIYNTESLNHLLQQEEDKKKVFHPKKAILTGPRIIYRSTPEQTTITF 327

Query:   246 SKGV 249
             +  +
Sbjct:   328 TDSI 331

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

ZFIN|ZDB-GENE-100922-13 si:ch211-203d17.1 "si:ch211-203d17.1" [Danio rerio (taxid:7955)]

 Score = 96 (38.9 bits), Expect = 0.00032, Sum P(2) = 0.00032
 Identities = 33/100 (33%), Positives = 49/100 (49%)

Query:   137 PNDVEGERIIRKSTRTAVVVRQAERDAIRAALQATMKPIKRKKEGEEKRMTQEEMLLEAA 196
             P +++ + I RKS R +    +  R       +  + P +RK    E+ +TQ E+L EA 
Sbjct:    83 PPELQDD-INRKSVRQSTT--EHTRLTYLRLQERQVAPRRRKGTRHERPLTQAELLAEAK 139

Query:   197 QTEIMNLRNLERVLAREEEVKKRAIVHKAVYTGPQLRYLS 236
              T  +NLR+LE    R E  KKR +  K    G  +RY S
Sbjct:   140 VTAEINLRSLENY-ERLEADKKRQVHMKRQCVGSVIRYHS 178

GO:0005634 "nucleus" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	307
pfam05764	238	pfam05764, YL1, YL1 nuclear protein	1e-42

>gnl|CDD|218737 pfam05764, YL1, YL1 nuclear protein

 Score =  146 bits (370), Expect = 1e-42
 Identities = 90/241 (37%), Positives = 124/241 (51%), Gaps = 21/241 (8%)

Query: 15  LDRSSRVTRGKRMNKLLDDENEEDEAFWNQDALKEEENDDNYEEEQEIADEF-DSDFDE- 72
             R+ R   G RM KLL++E EEDE FW     +EEE+D+ +E E+E  +E  DSDFD+ 
Sbjct: 2   ATRARRSNAGNRMKKLLEEELEEDEFFWTYLLFEEEEDDEEFEIEEEEEEEEVDSDFDDS 61

Query: 73  --DEPEPDEEVENEV---DERVWTKKRLIFPGKPLTKKKKKKKILSKLDSPDKDVKSNEQ 127
             DEPE D+E E E     E    KK+ +         KKKKK         K      +
Sbjct: 62  EDDEPESDDEEEGEKELQREERLKKKKRVKTKAYKEPTKKKKKKDPTAAKSPKAAAPRPK 121

Query: 128 SILPENHDVPNDVEGERIIRKSTRTAVV-------VRQAERDAIRAALQATMKPIKRKKE 180
                    P  ++  R  RKS+R++ V        R  ER+  R  +QA  K  KRK++
Sbjct: 122 KKSERISWAPTLLDSPR--RKSSRSSTVQNKEATHERLKEREIRRKKIQA--KARKRKEK 177

Query: 181 GEEKRMTQEEMLLEAAQTEIMNLRNLERVLAREEEVKKR---AIVHKAVYTGPQLRYLSK 237
            +EK +TQEE L EA +TE +NL++LER   +EEE KK    A+  + +Y GP +RY S 
Sbjct: 178 KKEKELTQEERLAEAKETERINLKSLERYEEQEEEKKKAKIQALKKRRLYEGPVIRYWSG 237

Query: 238 D 238
            
Sbjct: 238 T 238

The proteins in this family are designated YL1. These proteins have been shown to be DNA-binding and may be a transcription factor. Length = 238

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	307
KOG2897	390	consensus DNA-binding protein YL1 and related prot	100.0
PF05764	240	YL1: YL1 nuclear protein; InterPro: IPR008895 The	100.0
PF08265	30	YL1_C: YL1 nuclear protein C-terminal domain; Inte	99.27
KOG4137	102	consensus Uncharacterized conserved protein [Funct	98.87
COG5195	118	Uncharacterized conserved protein [Function unknow	98.78
KOG2897	390	consensus DNA-binding protein YL1 and related prot	96.27
PF05764	240	YL1: YL1 nuclear protein; InterPro: IPR008895 The	89.51
KOG0526	615	consensus Nucleosome-binding factor SPN, POB3 subu	89.01
PF10446	458	DUF2457: Protein of unknown function (DUF2457); In	88.44
PF04438	30	zf-HIT: HIT zinc finger; InterPro: IPR007529 Zinc	88.24
PF04795	89	PAPA-1: PAPA-1-like conserved region; InterPro: IP	86.48

>KOG2897 consensus DNA-binding protein YL1 and related proteins [General function prediction only]

Probab=100.00  E-value=1.2e-53  Score=408.69  Aligned_cols=292  Identities=37%  Similarity=0.471  Sum_probs=213.8

Q ss_pred             CCccccccccccccchHHHHHHhhhhhhhhhhhhcccccccccccCcc-cccccccccCCCCCCCC--CCCCchhhhhhh
Q 021799           10 DAPVFLDRSSRVTRGKRMNKLLDDENEEDEAFWNQDALKEEENDDNYE-EEQEIADEFDSDFDEDE--PEPDEEVENEVD   86 (307)
Q Consensus        10 ~~~~~~~R~~RstaG~Rm~~Ll~~e~~~D~~~~~~~~f~E~e~D~~~~-~E~e~eD~~DSDFd~dE--~~~dde~e~e~~   86 (307)
                      .+.|+++|++|+||||+|+.||++|+++|+++|+|+.|.++++|++|+ ++.+.+|++||||++|+  +++|++.++++.
T Consensus         4 t~~~~~~RSrRanaGnKls~LLe~E~ed~~~~t~q~s~~e~~~DeEyE~~~~e~eDe~DsDfs~d~~~~~sDe~sed~~~   83 (390)
T KOG2897|consen    4 TEMLAAGRSRRANAGNKLSKLLESEEEDDEYSTTQGSFSEDSHDEEYEGEESEEEDEVDSDFSIDETSNESDEESEDDKE   83 (390)
T ss_pred             chhhhhccccccccchHHHHHhhhhhhhhHHhhhhccccccccchhhhhhhhhhccccccccchhhccccCccccccccc
Confidence            456899999999999999999999999999999999999999999999 56789999999999983  222332222221


Q ss_pred             hhhhhhccccCCCCCcchhhhhhcccc-cCCCCCccccCcccCCCC----C-CCCCCCCcccccccchhhHHHHHHHHHH
Q 021799           87 ERVWTKKRLIFPGKPLTKKKKKKKILS-KLDSPDKDVKSNEQSILP----E-NHDVPNDVEGERIIRKSTRTAVVVRQAE  160 (307)
Q Consensus        87 er~~kKKr~~~~~k~~kk~~kKkk~~~-~~~~~~~~~k~~~~~~~~----~-~~~~~~~~~~~~~~R~StR~st~~r~~e  160 (307)
                      +....+++++.+.+.+++++   +++. .+..-++..++.+.....    . ...+.........+|+|+|+||+.+.++
T Consensus        84 ~~d~~~k~~vl~~~~rkkr~---k~~~k~~~~l~~~~~~~~~~~~~~~~~~~~~e~~~e~~~~~~~RkS~R~St~~~t~~  160 (390)
T KOG2897|consen   84 EEDEDAKRKVLRTKERKKRK---KALKKRAANLPAADKKPKFGGTAERSEEPNNEVQKEGKDPVHRRKSERTSTVEKTQE  160 (390)
T ss_pred             ccccccccchhhhHHhhhhh---hhhcccccccccccCCCCcCCcccccccchHHHHhhccCcccccchhhhHHHhhhhh
Confidence            11122333333222222211   1111 011111111111111100    0 1223333334457899999999999888


Q ss_pred             HHHHHHHHHHhccccccccccCC-CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccCCeEEEEec--
Q 021799          161 RDAIRAALQATMKPIKRKKEGEE-KRMTQEEMLLEAAQTEIMNLRNLERVLAREEEVKKRAIVHKAVYTGPQLRYLSK--  237 (307)
Q Consensus       161 ~e~~R~~~~~~~k~~~~Kk~~~~-~~lTQeElL~EA~~TE~~N~~SL~~~~~~EeekKk~~~~~k~~~~GP~ir~~S~--  237 (307)
                      ....|.+.+...+++++|++..+ +.+||||||.||++||.+|+.||+.+.++|+.+|++++.+|+.+.||+|+|||.  
T Consensus       161 ~~e~rs~~e~~~r~r~rK~~~~E~~~~TQeE~l~eAk~TE~~Nl~SLe~~~~~ee~~Kkk~~~~kr~~~~P~i~~~S~t~  240 (390)
T KOG2897|consen  161 ETELRSKEEKDGRPRRRKKKFNEPKMGTQEERLLEAKKTEAMNLLSLEIVAAREEDDKKKAAMKKRQEKGPIITYHSLTK  240 (390)
T ss_pred             HHHHhhhhhccccchhhcccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCceeEEeecc
Confidence            77777766665666665555544 445999999999999999999999999999999999999999999999999998  


Q ss_pred             ---------------------CC-c--eeeEEecCCcccccccCCCCCCC-CCcccccCCCCcCCCCCCCCcch---hHH
Q 021799          238 ---------------------DG-Y--SYLEFSKGVSFQSELSTTSVPYP-ERAVCAVTGLPAKNTMKRTTIAT---EEF  289 (307)
Q Consensus       238 ---------------------~~-~--~~i~f~~~~~~~~~~~~~~~~~p-~~~~C~iTg~pA~Y~DP~T~l~y---~~y  289 (307)
                                           .| |  ++|++.+.++|.++|+..++++| .+.+|+|||+||+|+||+|||||   .+|
T Consensus       241 ~~~~~~~~~~~~~~~~~~~~~~G~~~q~~~t~~~e~~~~s~~~~~~~p~~~~~~~C~iTg~PA~Y~DPVT~lPy~ta~AF  320 (390)
T KOG2897|consen  241 PAAFEPERGRKPAKNTVRLFPDGRCEQTFMTESGEASFLSEFPTKSPPKPRERVVCVITGRPARYLDPVTGLPYSTAQAF  320 (390)
T ss_pred             hhhcccccccccccccccccCCCcccceeeecccchhhhhcCCccCCCCCcccccccccCCcccccCcccCCcchhHHHH
Confidence                                 34 4  67888888999999999999887 89999999999999999999999   569


Q ss_pred             HHHhhhcccchhhcc
Q 021799          290 ILLWTMTVSNLLQIG  304 (307)
Q Consensus       290 ~~ir~~~~~~~~~~~  304 (307)
                      ++||+-+--.|++++
T Consensus       321 KviRe~y~~~~~~~~  335 (390)
T KOG2897|consen  321 KVIRERYKKHLRSIR  335 (390)
T ss_pred             HHHHHHHHHHhhhcc
Confidence            999966655555555

>PF05764 YL1: YL1 nuclear protein; InterPro: IPR008895 The proteins in this family are designated YL1 []

Probab=100.00  E-value=2.4e-48  Score=359.05  Aligned_cols=214  Identities=43%  Similarity=0.569  Sum_probs=152.6

Q ss_pred             ccccccccccchHHHHHHhhhhhhhhhhhhc-ccccccccccCccccccccccc--CCCCCCCCCCC---Cchhhhhh--
Q 021799           14 FLDRSSRVTRGKRMNKLLDDENEEDEAFWNQ-DALKEEENDDNYEEEQEIADEF--DSDFDEDEPEP---DEEVENEV--   85 (307)
Q Consensus        14 ~~~R~~RstaG~Rm~~Ll~~e~~~D~~~~~~-~~f~E~e~D~~~~~E~e~eD~~--DSDFd~dE~~~---dde~e~e~--   85 (307)
                      |++|++||||||||++||++|++.|++||++ +||+||++|++|+++++++|++  |||||+|++++   +++.+++.  
T Consensus         1 v~~R~rRsnaGnrm~~LL~~E~e~de~~~~~~~~f~Eee~D~ef~~~~~eed~~~~Dsdf~~se~de~~~~~e~e~e~~~   80 (240)
T PF05764_consen    1 VATRPRRSNAGNRMKKLLEEELEEDEFFWNQYGLFQEEEDDEEFESEEEEEDEEEDDSDFDDSEDDEDESDDEEEGEKEL   80 (240)
T ss_pred             CCCcccccchhHHHHHHHHHHHhhhhhhhhhcccccccCCCccccCCCccccccccccccCccccCCCCCcccchhhhHH
Confidence            6899999999999999999999999999995 5599999999999887777776  99999887632   33334433  


Q ss_pred             --hhhhhhhccccCCCCCcchhhhhhcccc-c----CCCCCccccCcccCCCCCCCCCCCCcccccccchhhHHHHH---
Q 021799           86 --DERVWTKKRLIFPGKPLTKKKKKKKILS-K----LDSPDKDVKSNEQSILPENHDVPNDVEGERIIRKSTRTAVV---  155 (307)
Q Consensus        86 --~er~~kKKr~~~~~k~~kk~~kKkk~~~-~----~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~R~StR~st~---  155 (307)
                        .++..+|++++ ++.+..+..++++..+ .    ...++++++++..     ..++++...  ..+|+|+|+||+   
T Consensus        81 ~~~ek~~kkk~~~-~~~~~~p~~~k~k~~~~~~~~~~~~~~~~k~~~~~-----~~~~~~~~~--~~~R~S~R~st~~~~  152 (240)
T PF05764_consen   81 RREEKLKKKKRRK-KKAYKEPAKKKKKKPPQAAKKDSAAAPKPKKKKER-----QSWAPTLLD--SPRRKSTRSSTVANK  152 (240)
T ss_pred             HHHHHHHHhhhcc-cccchhhhhhcccccccccccccccCCCCcccccc-----ccCcccccc--cchhhhHHHHHHHHH
Confidence              22222333222 2333222212211111 1    1112223322222     123443222  347888888876   


Q ss_pred             ----HHHHHHHHHHHHHHHhccccccccccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---Hhhhcccccc
Q 021799          156 ----VRQAERDAIRAALQATMKPIKRKKEGEEKRMTQEEMLLEAAQTEIMNLRNLERVLAREEEVKK---RAIVHKAVYT  228 (307)
Q Consensus       156 ----~r~~e~e~~R~~~~~~~k~~~~Kk~~~~~~lTQeElL~EA~~TE~~N~~SL~~~~~~EeekKk---~~~~~k~~~~  228 (307)
                          .++++++.+|+.+++.|  .++++....++|||+|||+||++||++|++||++|+++|+++|+   .+.++|.++.
T Consensus       153 ~~~~~rlke~e~~r~~~~~~~--~~~k~~~~~~~lTQeElL~EAk~TE~~N~~SL~~~~~~EeekKk~~~~~~~~K~~~~  230 (240)
T PF05764_consen  153 QATYERLKEREEKRKKRQARM--KKKKKKQEERPLTQEELLEEAKETEEENLKSLNKYEELEEEKKKAQRQAQKKKKIYT  230 (240)
T ss_pred             HHHHHHHHHHHHHHHHHHHhh--hcccccccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCC
Confidence                68888888888777776  35566778899999999999999999999999999999999998   6677777779


Q ss_pred             CCeEEEEec
Q 021799          229 GPQLRYLSK  237 (307)
Q Consensus       229 GP~ir~~S~  237 (307)
                      ||+|+|||+
T Consensus       231 GP~ir~~S~  239 (240)
T PF05764_consen  231 GPVIRYHSR  239 (240)
T ss_pred             CCeEEEEeC
Confidence            999999997

They have been shown to be DNA-binding and may be transcription factors [].; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus

>PF08265 YL1_C: YL1 nuclear protein C-terminal domain; InterPro: IPR013272 This domain is found at the C terminus in proteins of the YL1 family []

Probab=99.27  E-value=1.4e-12  Score=84.64  Aligned_cols=27  Identities=26%  Similarity=0.584  Sum_probs=23.7

Q ss_pred             cccccCCCCcCCCCCCCCcchh---HHHHH
Q 021799          266 AVCAVTGLPAKNTMKRTTIATE---EFILL  292 (307)
Q Consensus       266 ~~C~iTg~pA~Y~DP~T~l~y~---~y~~i  292 (307)
                      .+|+|||+||+|+||.|||||+   +|++|
T Consensus         1 k~C~iTglpA~Y~DP~T~l~Y~n~~ayk~i   30 (30)
T PF08265_consen    1 KYCDITGLPARYRDPKTGLPYANSEAYKII   30 (30)
T ss_pred             CcccccCCCccccCCCCCCcccCHHHhhcC
Confidence            4899999999999999999994   57764

These proteins have been shown to be DNA-binding and may be transcription factors []. This domain is also found in proteins that do not belong to the YL1 family.

>KOG4137 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.87  E-value=8.5e-10  Score=88.85  Aligned_cols=36  Identities=33%  Similarity=0.526  Sum_probs=32.7

Q ss_pred             CCCCcccccCCCCcCCCCCCCCcchhH---HHHHhhhcc
Q 021799          262 YPERAVCAVTGLPAKNTMKRTTIATEE---FILLWTMTV  297 (307)
Q Consensus       262 ~p~~~~C~iTg~pA~Y~DP~T~l~y~~---y~~ir~~~~  297 (307)
                      .|.+.+|+||||||.|.||.|+|.||+   |++|++|+.
T Consensus        47 ~PakKycDvTGLpapYtdP~t~Lry~naeiY~~i~emps   85 (102)
T KOG4137|consen   47 KPAKKYCDVTGLPAPYTDPNTGLRYHNAEIYKLICEMPS   85 (102)
T ss_pred             ccchhhccccCCcccccCCCccceeccHHHHHHHHHCCc
Confidence            567789999999999999999999954   999999984

>COG5195 Uncharacterized conserved protein [Function unknown]

Probab=98.78  E-value=2.5e-09  Score=87.42  Aligned_cols=75  Identities=23%  Similarity=0.343  Sum_probs=49.6

Q ss_pred             hccccccCCeEEEEecCCc-eeeEEec----CCcccccccCCCCCCCCCcccccCCCCcCCCCCCCCcchhH---HHHHh
Q 021799          222 VHKAVYTGPQLRYLSKDGY-SYLEFSK----GVSFQSELSTTSVPYPERAVCAVTGLPAKNTMKRTTIATEE---FILLW  293 (307)
Q Consensus       222 ~~k~~~~GP~ir~~S~~~~-~~i~f~~----~~~~~~~~~~~~~~~p~~~~C~iTg~pA~Y~DP~T~l~y~~---y~~ir  293 (307)
                      .++..+.||--||.+...- +-++..+    ..++.-+-|  ..-.|+..+|+||||||.|.||.|||.||+   |++|+
T Consensus        20 fk~~~Yk~~~rr~ktlrQli~~~~i~ne~sk~~Y~sieap--pSv~P~~KyCDvTGL~a~Yt~P~t~lrYhn~eiY~lI~   97 (118)
T COG5195          20 FKKSTYKGKNRRFKTLRQLIPRLTIENESSKHRYLSIEAP--PSVKPRMKYCDVTGLPAPYTCPNTGLRYHNSEIYKLIC   97 (118)
T ss_pred             ccCccccCcccchhhHHHHccccccccccccceeEeecCC--CccccccccccccCCcccccCCCcCceeccHHHHHHhh
Confidence            5677778888888775311 1112222    222221111  113577789999999999999999999965   99999


Q ss_pred             hhccc
Q 021799          294 TMTVS  298 (307)
Q Consensus       294 ~~~~~  298 (307)
                      +|+..
T Consensus        98 elpsg  102 (118)
T COG5195          98 ELPSG  102 (118)
T ss_pred             cCCCc
Confidence            99853

>KOG2897 consensus DNA-binding protein YL1 and related proteins [General function prediction only]

Probab=96.27  E-value=0.0012  Score=64.92  Aligned_cols=87  Identities=20%  Similarity=0.178  Sum_probs=51.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccc--cCCeEEEEecCC--ceeeEEecCCccc----ccccCCC
Q 021799          188 QEEMLLEAAQTEIMNLRNLERVLAREEEVKKRAIVHKAVY--TGPQLRYLSKDG--YSYLEFSKGVSFQ----SELSTTS  259 (307)
Q Consensus       188 QeElL~EA~~TE~~N~~SL~~~~~~EeekKk~~~~~k~~~--~GP~ir~~S~~~--~~~i~f~~~~~~~----~~~~~~~  259 (307)
                      +...+..+..+..+|+.||..+..++-.+..........+  .|+.-+-.+..+  .+|....+....+    ..+|. .
T Consensus       220 k~~~~kr~~~~P~i~~~S~t~~~~~~~~~~~~~~~~~~~~~~~G~~~q~~~t~~~e~~~~s~~~~~~~p~~~~~~~C~-i  298 (390)
T KOG2897|consen  220 KAAMKKRQEKGPIITYHSLTKPAAFEPERGRKPAKNTVRLFPDGRCEQTFMTESGEASFLSEFPTKSPPKPRERVVCV-I  298 (390)
T ss_pred             HHHHHhhhccCCceeEEeecchhhcccccccccccccccccCCCcccceeeecccchhhhhcCCccCCCCCccccccc-c
Confidence            6667777788889999999988877777654443332222  676555555544  2343333322211    12221 1


Q ss_pred             CCCCCCcccccCCCCc
Q 021799          260 VPYPERAVCAVTGLPA  275 (307)
Q Consensus       260 ~~~p~~~~C~iTg~pA  275 (307)
                      .-.|.+-.-+|||+|-
T Consensus       299 Tg~PA~Y~DPVT~lPy  314 (390)
T KOG2897|consen  299 TGRPARYLDPVTGLPY  314 (390)
T ss_pred             cCCcccccCcccCCcc
Confidence            1356677788999995

>PF05764 YL1: YL1 nuclear protein; InterPro: IPR008895 The proteins in this family are designated YL1 []

Probab=89.51  E-value=1.9  Score=40.35  Aligned_cols=6  Identities=0%  Similarity=0.412  Sum_probs=3.5

Q ss_pred             eeeEEe
Q 021799          241 SYLEFS  246 (307)
Q Consensus       241 ~~i~f~  246 (307)
                      ++|.|.
T Consensus       232 P~ir~~  237 (240)
T PF05764_consen  232 PVIRYH  237 (240)
T ss_pred             CeEEEE
Confidence            566654

They have been shown to be DNA-binding and may be transcription factors [].; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus

>KOG0526 consensus Nucleosome-binding factor SPN, POB3 subunit [Transcription; Replication, recombination and repair; Chromatin structure and dynamics]

Probab=89.01  E-value=0.24  Score=51.28  Aligned_cols=34  Identities=15%  Similarity=0.396  Sum_probs=14.9

Q ss_pred             chHHHHHHhhhhhhhhhhhhcccccccccccCcc
Q 021799           24 GKRMNKLLDDENEEDEAFWNQDALKEEENDDNYE   57 (307)
Q Consensus        24 G~Rm~~Ll~~e~~~D~~~~~~~~f~E~e~D~~~~   57 (307)
                      --.++.|+++..++++.--+...=..++.|++|.
T Consensus       440 D~~~~~~~~e~~~~edd~~d~~~de~~e~Dedf~  473 (615)
T KOG0526|consen  440 DEYLATLKAEDRDEEDDSDDSSTDEDEEEDEDFK  473 (615)
T ss_pred             chHHhhhccccchhhhcccccccccchhhhhhcc
Confidence            3456666665443332211122211234466666

>PF10446 DUF2457: Protein of unknown function (DUF2457); InterPro: IPR018853 This entry represents a family of uncharacterised proteins

Probab=88.44  E-value=0.29  Score=49.66  Aligned_cols=8  Identities=25%  Similarity=0.189  Sum_probs=4.3

Q ss_pred             CCCCCccc
Q 021799            7 SKEDAPVF   14 (307)
Q Consensus         7 ~~e~~~~~   14 (307)
                      .+++.||-
T Consensus        10 ~e~ddWi~   17 (458)
T PF10446_consen   10 PEEDDWIR   17 (458)
T ss_pred             cchhhhhh
Confidence            34556764

>PF04438 zf-HIT: HIT zinc finger; InterPro: IPR007529 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=88.24  E-value=0.17  Score=32.78  Aligned_cols=22  Identities=36%  Similarity=0.532  Sum_probs=16.9

Q ss_pred             CcccccCCCCcCCCCCCCCcch
Q 021799          265 RAVCAVTGLPAKNTMKRTTIAT  286 (307)
Q Consensus       265 ~~~C~iTg~pA~Y~DP~T~l~y  286 (307)
                      ..+|.|=|.+++|+.|..+++|
T Consensus         2 ~~~C~vC~~~~kY~Cp~C~~~~   23 (30)
T PF04438_consen    2 RKLCSVCGNPAKYRCPRCGARY   23 (30)
T ss_dssp             -EEETSSSSEESEE-TTT--EE
T ss_pred             cCCCccCcCCCEEECCCcCCce
Confidence            4689999999999999999999

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents the HIT-type zinc finger, which contains 7 conserved cysteines and one histidine that can potentially coordinate two zinc atoms. It has been named after the first protein that originally defined the domain: the yeast HIT1 protein (P46973 from SWISSPROT) []. The HIT-type zinc finger displays some sequence similarities to the MYND-type zinc finger. The function of this domain is unknown but it is mainly found in nuclear proteins involved in gene regulation and chromatin remodeling. This domain is also found in the thyroid receptor interacting protein 3 (TRIP-3) Q15649 from SWISSPROT, that specifically interacts with the ligand binding domain of the thyroid receptor. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 2YQP_A 2YQQ_A 1X4S_A.

>PF04795 PAPA-1: PAPA-1-like conserved region; InterPro: IPR006880 This is a group of proteins with a conserved C-terminal region which is found in PAPA-1, a PAP-1 binding protein, Q9C086 from SWISSPROT

Probab=86.48  E-value=2.9  Score=33.50  Aligned_cols=26  Identities=15%  Similarity=0.275  Sum_probs=21.6

Q ss_pred             cccCCeEEEEecCCceeeEEecCCcc
Q 021799          226 VYTGPQLRYLSKDGYSYLEFSKGVSF  251 (307)
Q Consensus       226 ~~~GP~ir~~S~~~~~~i~f~~~~~~  251 (307)
                      ...-|+|||+|+..+++|+|..+..|
T Consensus        63 ~~~~~~IR~v~~~~G~~vs~P~~~~~   88 (89)
T PF04795_consen   63 KPNPPMIRWVSNKNGSRVSVPEEMGL   88 (89)
T ss_pred             CCCCCEEEEEECCCceEEEecCCCCC
Confidence            34779999999999999999887554

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	307
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-06

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 47.9 bits (113), Expect = 2e-06
 Identities = 33/229 (14%), Positives = 71/229 (31%), Gaps = 53/229 (23%)

Query: 7   SKEDAPVFLDRSSRVTRGKRMNKLLDDENEED-EAFWNQDALKEEENDDNYEEEQEIADE 65
           SKE+    +     V+   R+   L  + EE  + F       EE    NY+    +   
Sbjct: 47  SKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFV------EEVLRINYK---FLMSP 97

Query: 66  FDSDFDEDEPEPDEEVENEVDERVWTKKRLIFPGKPLTKKKKKKKILSKL--DSPDKDVK 123
             +  ++ +P     +  E  +R++   + +F    +++ +   K+   L    P K+V 
Sbjct: 98  IKT--EQRQPSMMTRMYIEQRDRLYNDNQ-VFAKYNVSRLQPYLKLRQALLELRPAKNVL 154

Query: 124 SNEQSILPENHDVPNDVEGERIIRKSTRTAVVVRQAER-------------------DAI 164
                           ++G     K+     V    +                    + +
Sbjct: 155 ----------------IDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETV 198

Query: 165 RAALQATMKPIKRKKEGEEKRMTQEEMLLEAAQTEIMNL---RNLERVL 210
              LQ  +  I           +  ++ + + Q E+  L   +  E  L
Sbjct: 199 LEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCL 247

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00