Citrus Sinensis ID: 021811

Local Sequence Feature Prediction

Prediction and (Method)	Result

Residue Number Marker

Protein Sequence

Secondary Structure (PSIPRED)

Secondary Structure Prediction (SSPRO)

Coil and Loop (DISEMBL)

Flexible Loop (DISEMBL)

Low Complexity Region (SEG)

Disordered region (IsUnstruct)

Disordered Region (DISOPRED)

Disordered Region (DISEMBL)

Disordered Region (DISPRO)

Transmembrane Helix (TMHMM)

Transmembrane Helix (HMMTOP)

Transmembrane Helix (MEMSAT)

TM Helix, Signal Peptide (MEMSAT_SVM)

TM Helix, Signal Peptide (Phobius)

Signal Peptide (SignalP HMM Mode)

Signal Peptide (SignalP NN Mode)

Coiled Coils (COILS)

Positional Conservation

--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------

MVKGALKEYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDDEMQCDIIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMGSFKGLKQVRRIVEDCMQNKMHPVYHIKILMVKKELEKDPALANENWDRFLPKFKKKNVKQKKVKSKEKKPYTPFPPPPQPSKIDKLLESGEYFLSERKKESKKWQEKQEKQAEKTAENKRKRDAAFIPPEEPSRQNSCEAEDKTNDVAAMAKSLKEKAKKLRKQKFAENINPEEYIAASGEKPSKKKKSK

cHHHHHHHHccEEEEEccccEEEEEcccccccHHHHHHHHHHHHHHHccccHHHHHHHHccccEEEEEEcccccccHHHHHHHHccccccccHHHHHHHHHHccEEEEEccEEEEEEccccHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHcccccccccHHHHcHHHHHHHccccccccccccccccccccccccHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccHHHHHccccHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccc

cHHHHHHHcccEEEEEEEEccEEEEcccccccHHHHHHHHHHHHHHHccccHHHHHHHHcccccEEEEEEccHcccHHHHHHHHHHHcccccHHHHHHHHHHccEEEEEcccEEEcccHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHccHHHHcccHHHHcHHHHHHcHcccccccccccccccccccccccHHHHHHHccHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHccccHHHHEEccccccccccccc

MVKGALKEYGVSCELNLvegsmtvsttrktrdpyiIVKARDLIRLlsrsvpapqaikILDDEMQCDIIKIGNLVRNKERFVKRrqhlvgpnsstlKALEILTGCYILVQGNTVAAMGSFKGLKQVRRIVEDCmqnkmhpvyHIKILMVKKelekdpalanenwdrflpkfkkknvkqkkvkskekkpytpfppppqpskidkLLESGEYFLSERKKESKKWQEKQEKQAEKTAENKrkrdaafippeepsrqnsceaedkTNDVAAMAKSLKEKAKKLRKQKFaeninpeeyiaasgekpskkkksk

mvkgalkeygvscelnlvegsmtvsttrktrdpyiIVKARDLIRLLSRSVPAPQaikilddemqcDIIKIGNLVRNKERFvkrrqhlvgpnsstlkALEILTGCYILVQGNTVAAMGSFKGLKQVRRIVEDCMQNKMHPVYHIKILMVKKELEKDPALAnenwdrflpkfkkknvkqkkvkskekkpytpfppppqpskidKLLESGEYFLSerkkeskkwqEKQEKQaektaenkrkrdaafippeepsrqnsceaedKTNDVAAMAKSLKEKAKKlrkqkfaeninpeeyiaasgekpskkkksk

MVKGALKEYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDDEMQCDIIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMGSFKGLKQVRRIVEDCMQNKMHPVYHIKILMVKKELEKDPALANENWDRFLPkfkkknvkqkkvkskekkpytpfppppqpskidkLLESGEYFLSerkkeskkwqekqekqaektaenkRKRDAAFIPPEEPSRQNSCEAEDKTNDVaamakslkekakklrkqkfaENINPEEYIAASGEkpskkkksk

*******EYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDDEMQCDIIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMGSFKGLKQVRRIVEDCMQNKMHPVYHIKILMVKKELEKDPALANENWDRFL********************************************************************************************************************************************

MVKGAL*EYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDDEMQCDIIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMGSFKGLKQVRRIVEDCMQNKMHPVYHIKIL****************WDRFL**********************************KLLESGE***************************************************************************************************

MVKGALKEYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDDEMQCDIIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMGSFKGLKQVRRIVEDCMQNKMHPVYHIKILMVKKELEKDPALANENWDRFLPKFKK*******************PPPPQPSKIDKLLESGEYFLS***************************DAAFIPP************DKTNDVAAMAKSLKEKAKKLRKQKFAENINPEEYIAA************

MVKGALKEYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDDEMQCDIIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMGSFKGLKQVRRIVEDCMQNKMHPVYHIKILMVKKELEKDPALANENWDRFLPKFKKKNVK*********KPYTPFPPPPQPSKIDKLLESGEYFLSERKKESKK*********************A********************DVAAMAKSLKEKAKKLRKQK**E**********************

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no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Alignment graph	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query		307	2.2.26 [Sep-21-2011]
E7QBZ1		316	KRR1 small subunit proces	N/A	no	0.801	0.778	0.664	2e-89
E7LRT8		316	KRR1 small subunit proces	N/A	no	0.801	0.778	0.664	2e-89
P25586		316	KRR1 small subunit proces	yes	no	0.801	0.778	0.664	2e-89
C8Z430		316	KRR1 small subunit proces	N/A	no	0.801	0.778	0.664	2e-89
B5VEQ2		316	KRR1 small subunit proces	N/A	no	0.801	0.778	0.664	2e-89
B3LU25		316	KRR1 small subunit proces	N/A	no	0.801	0.778	0.664	2e-89
O74777		327	KRR1 small subunit proces	yes	no	0.814	0.764	0.658	5e-86
B4JDU5		341	KRR1 small subunit proces	N/A	no	0.807	0.727	0.581	1e-81
B4N0P7		347	KRR1 small subunit proces	N/A	no	0.840	0.743	0.580	1e-81
Q9VPU8		345	KRR1 small subunit proces	yes	no	0.912	0.811	0.537	2e-81

>sp\|E7QBZ1\|KRR1_YEASZ KRR1 small subunit processome component OS=Saccharomyces cerevisiae (strain Zymaflore VL3) GN=KRR1 PE=3 SV=1	Back alignment and function desciption

 Score =  329 bits (843), Expect = 2e-89,   Method: Compositional matrix adjust.
 Identities = 166/250 (66%), Positives = 202/250 (80%), Gaps = 4/250 (1%)

Query: 2   VKGALKEYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDD 61
           V  AL ++ ++C L+LVEGSMTV TTRKT DP II+KARDLI+LL+RSVP PQA+KIL D
Sbjct: 60  VTRALDKHNIACVLDLVEGSMTVKTTRKTYDPAIILKARDLIKLLARSVPFPQAVKILQD 119

Query: 62  EMQCDIIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMGSFKG 121
           +M CD+IKIGN V NKERFVKRRQ LVGPN +TLKALE+LT CYILVQGNTV+AMG FKG
Sbjct: 120 DMACDVIKIGNFVTNKERFVKRRQRLVGPNGNTLKALELLTKCYILVQGNTVSAMGPFKG 179

Query: 122 LKQVRRIVEDCMQNKMHPVYHIKILMVKKELEKDPALANENWDRFLPKFKKKNV---KQK 178
           LK+VRR+VEDCM+N +HP+YHIK LM+K+EL K P LANE+W RFLP FKK+NV   K K
Sbjct: 180 LKEVRRVVEDCMKN-IHPIYHIKELMIKRELAKRPELANEDWSRFLPMFKKRNVARKKPK 238

Query: 179 KVKSKEKKPYTPFPPPPQPSKIDKLLESGEYFLSERKKESKKWQEKQEKQAEKTAENKRK 238
           K+++ EKK YTPFPP   P K+D  +ESGEYFLS+R+K+ KK  E++EKQ E+  E + +
Sbjct: 239 KIRNVEKKVYTPFPPAQLPRKVDLEIESGEYFLSKREKQMKKLNEQKEKQMEREIERQEE 298

Query: 239 RDAAFIPPEE 248
           R   FI PEE
Sbjct: 299 RAKDFIAPEE 308

Required for 40S ribosome biogenesis. Involved in nucleolar processing of pre-18S ribosomal RNA and ribosome assembly. Essential for vegetative growth.
Saccharomyces cerevisiae (strain Zymaflore VL3) (taxid: 764100)

>sp\|E7LRT8\|KRR1_YEASV KRR1 small subunit processome component OS=Saccharomyces cerevisiae (strain VIN 13) GN=KRR1 PE=3 SV=1	Back alignment and function description

>sp\|P25586\|KRR1_YEAST KRR1 small subunit processome component OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=KRR1 PE=1 SV=1	Back alignment and function description

>sp\|C8Z430\|KRR1_YEAS8 KRR1 small subunit processome component OS=Saccharomyces cerevisiae (strain Lalvin EC1118 / Prise de mousse) GN=KRR1 PE=3 SV=1	Back alignment and function description

>sp\|B5VEQ2\|KRR1_YEAS6 KRR1 small subunit processome component OS=Saccharomyces cerevisiae (strain AWRI1631) GN=KRR1 PE=3 SV=1	Back alignment and function description

>sp\|B3LU25\|KRR1_YEAS1 KRR1 small subunit processome component OS=Saccharomyces cerevisiae (strain RM11-1a) GN=KRR1 PE=3 SV=1	Back alignment and function description

>sp\|O74777\|KRR1_SCHPO KRR1 small subunit processome component homolog OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=mis3 PE=3 SV=1	Back alignment and function description

>sp\|B4JDU5\|KRR1_DROGR KRR1 small subunit processome component homolog OS=Drosophila grimshawi GN=dbe PE=3 SV=1	Back alignment and function description

>sp\|B4N0P7\|KRR1_DROWI KRR1 small subunit processome component homolog OS=Drosophila willistoni GN=dbe PE=3 SV=1	Back alignment and function description

>sp\|Q9VPU8\|KRR1_DROME KRR1 small subunit processome component homolog OS=Drosophila melanogaster GN=dbe PE=1 SV=1	Back alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Alignment Graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		307
255544688		377	Ribosomal RNA assembly protein mis3, put	0.990	0.806	0.835	1e-135
356501320		389	PREDICTED: ribosomal RNA assembly protei	0.996	0.786	0.798	1e-126
388504376		380	unknown [Medicago truncatula]	0.957	0.773	0.793	1e-126
357493549		424	KRR1 small subunit processome component-	0.957	0.693	0.793	1e-126
359807638		389	uncharacterized protein LOC100816856 [Gl	0.996	0.786	0.794	1e-126
224094246		379	predicted protein [Populus trichocarpa]	0.973	0.788	0.796	1e-126
225429319		386	PREDICTED: ribosomal RNA assembly protei	0.973	0.774	0.829	1e-123
296083097		424	unnamed protein product [Vitis vinifera]	0.973	0.705	0.829	1e-123
449444252		350	PREDICTED: KRR1 small subunit processome	0.996	0.874	0.798	1e-121
449493026		379	PREDICTED: KRR1 small subunit processome	0.996	0.807	0.798	1e-120

>gi\|255544688\|ref\|XP_002513405.1\| Ribosomal RNA assembly protein mis3, putative [Ricinus communis] gi\|223547313\|gb\|EEF48808.1\| Ribosomal RNA assembly protein mis3, putative [Ricinus communis]	Back alignment and taxonomy information

 Score =  486 bits (1252), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 254/304 (83%), Positives = 277/304 (91%)

Query: 1   MVKGALKEYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILD 60
           MVK A+KEYGV+CELNLVEGSMTVSTTRKTRDPYIIVKARDLI+LLSRSVPAPQAIKIL 
Sbjct: 68  MVKSAIKEYGVACELNLVEGSMTVSTTRKTRDPYIIVKARDLIKLLSRSVPAPQAIKILH 127

Query: 61  DEMQCDIIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMGSFK 120
           DEMQCDIIKIGNLVR KERFVKRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMGSFK
Sbjct: 128 DEMQCDIIKIGNLVRKKERFVKRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMGSFK 187

Query: 121 GLKQVRRIVEDCMQNKMHPVYHIKILMVKKELEKDPALANENWDRFLPKFKKKNVKQKKV 180
           GLKQVR+IVEDC+QNK+HPVYHIKILM+KKELEKDPAL NENWDRFLPKFKKKNVK  KV
Sbjct: 188 GLKQVRKIVEDCIQNKLHPVYHIKILMMKKELEKDPALQNENWDRFLPKFKKKNVKHNKV 247

Query: 181 KSKEKKPYTPFPPPPQPSKIDKLLESGEYFLSERKKESKKWQEKQEKQAEKTAENKRKRD 240
           K KEKKPYTPFPP  QPSK+D+ LESGEYFL+ +KK++KKWQEKQE+QAEKTAENKRKRD
Sbjct: 248 KRKEKKPYTPFPPEQQPSKVDRELESGEYFLNNQKKQAKKWQEKQERQAEKTAENKRKRD 307

Query: 241 AAFIPPEEPSRQNSCEAEDKTNDVAAMAKSLKEKAKKLRKQKFAENINPEEYIAASGEKP 300
            AF+PPEE   Q++ ++EDK NDVAA+A S+K+KAK   K+   ENIN EEYIAASGE P
Sbjct: 308 TAFVPPEEHRDQDAGKSEDKNNDVAAIALSIKKKAKDFGKKNAVENINAEEYIAASGELP 367

Query: 301 SKKK 304
            KKK
Sbjct: 368 KKKK 371

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi\|356501320\|ref\|XP_003519473.1\| PREDICTED: ribosomal RNA assembly protein mis3-like [Glycine max]	Back alignment and taxonomy information

>gi\|388504376\|gb\|AFK40254.1\| unknown [Medicago truncatula]	Back alignment and taxonomy information

>gi\|357493549\|ref\|XP_003617063.1\| KRR1 small subunit processome component-like protein [Medicago truncatula] gi\|355518398\|gb\|AET00022.1\| KRR1 small subunit processome component-like protein [Medicago truncatula]	Back alignment and taxonomy information

>gi\|359807638\|ref\|NP_001241422.1\| uncharacterized protein LOC100816856 [Glycine max] gi\|255639399\|gb\|ACU19995.1\| unknown [Glycine max]	Back alignment and taxonomy information

>gi\|224094246\|ref\|XP_002310107.1\| predicted protein [Populus trichocarpa] gi\|222853010\|gb\|EEE90557.1\| predicted protein [Populus trichocarpa]	Back alignment and taxonomy information

>gi\|225429319\|ref\|XP_002271394.1\| PREDICTED: ribosomal RNA assembly protein mis3-like [Vitis vinifera]	Back alignment and taxonomy information

>gi\|296083097\|emb\|CBI22501.3\| unnamed protein product [Vitis vinifera]	Back alignment and taxonomy information

>gi\|449444252\|ref\|XP_004139889.1\| PREDICTED: KRR1 small subunit processome component homolog [Cucumis sativus]	Back alignment and taxonomy information

>gi\|449493026\|ref\|XP_004159171.1\| PREDICTED: KRR1 small subunit processome component homolog [Cucumis sativus]	Back alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Alignment graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		307
TAIR\|locus:2150818		391	AT5G08420 [Arabidopsis thalian	0.543	0.427	0.898	1.2e-87
UNIPROTKB\|G4N4Y1		320	MGG_06049 "KRR1 small subunit	0.543	0.521	0.726	3.3e-67
POMBASE\|SPBC25B2.05		327	mis3 "rRNA processing protein	0.540	0.507	0.718	6.8e-67
ASPGD\|ASPL0000001309		358	AN5875 [Emericella nidulans (t	0.543	0.466	0.714	7.7e-66
SGD\|S000000564		316	KRR1 "Nucleolar protein requir	0.540	0.525	0.730	1.6e-65
CGD\|CAL0001053		358	KRR1 [Candida albicans (taxid:	0.540	0.463	0.706	2.9e-64
UNIPROTKB\|F1SGD9		375	KRR1 "KRR1 small subunit proce	0.543	0.445	0.642	2.3e-60
MGI\|MGI:1289274		380	Krr1 "KRR1, small subunit (SSU	0.543	0.439	0.636	2.3e-60
UNIPROTKB\|Q13601		381	KRR1 "KRR1 small subunit proce	0.543	0.438	0.642	3.8e-60
UNIPROTKB\|Q3B7L9		382	KRR1 "KRR1 small subunit proce	0.543	0.437	0.642	6.1e-60

TAIR\|locus:2150818 AT5G08420 [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

 Score = 773 (277.2 bits), Expect = 1.2e-87, Sum P(2) = 1.2e-87
 Identities = 150/167 (89%), Positives = 161/167 (96%)

Query:     2 VKGALKEYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDD 61
             V+ ALKEYGV+C+LNLVEGSMTVSTTRKTRDPYIIVKARDLI+LLSRSVPAPQAIKIL+D
Sbjct:    78 VESALKEYGVACKLNLVEGSMTVSTTRKTRDPYIIVKARDLIKLLSRSVPAPQAIKILED 137

Query:    62 EMQCDIIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMGSFKG 121
             E+QCDIIKIGNLVRNKERFVKRRQ LVGPNSSTLKALEILT CYILVQG+TVAAMG FKG
Sbjct:   138 EVQCDIIKIGNLVRNKERFVKRRQRLVGPNSSTLKALEILTNCYILVQGSTVAAMGPFKG 197

Query:   122 LKQVRRIVEDCMQNKMHPVYHIKILMVKKELEKDPALANENWDRFLP 168
             LKQ+RRIVEDC+QN MHPVYHIK LM+KKELEKDPALANE+WDRFLP
Sbjct:   198 LKQLRRIVEDCVQNIMHPVYHIKTLMMKKELEKDPALANESWDRFLP 244

GO:0003723 "RNA binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

UNIPROTKB\|G4N4Y1 MGG_06049 "KRR1 small subunit processome component" [Magnaporthe oryzae 70-15 (taxid:242507)]	Back alignment and assigned GO terms

POMBASE\|SPBC25B2.05 mis3 "rRNA processing protein Mis3" [Schizosaccharomyces pombe (taxid:4896)]	Back alignment and assigned GO terms

ASPGD\|ASPL0000001309 AN5875 [Emericella nidulans (taxid:162425)]	Back alignment and assigned GO terms

SGD\|S000000564 KRR1 "Nucleolar protein required for rRNA synthesis and ribosomal assembly" [Saccharomyces cerevisiae (taxid:4932)]	Back alignment and assigned GO terms

CGD\|CAL0001053 KRR1 [Candida albicans (taxid:5476)]	Back alignment and assigned GO terms

UNIPROTKB\|F1SGD9 KRR1 "KRR1 small subunit processome component" [Sus scrofa (taxid:9823)]	Back alignment and assigned GO terms

MGI\|MGI:1289274 Krr1 "KRR1, small subunit (SSU) processome component, homolog (yeast)" [Mus musculus (taxid:10090)]	Back alignment and assigned GO terms

UNIPROTKB\|Q13601 KRR1 "KRR1 small subunit processome component homolog" [Homo sapiens (taxid:9606)]	Back alignment and assigned GO terms

UNIPROTKB\|Q3B7L9 KRR1 "KRR1 small subunit processome component homolog" [Bos taurus (taxid:9913)]	Back alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9VPU8	KRR1_DROME	No assigned EC number	0.5371	0.9120	0.8115	yes	no
B4LTY6	KRR1_DROVI	No assigned EC number	0.5441	0.9055	0.8104	N/A	no
Q3B7L9	KRR1_BOVIN	No assigned EC number	0.584	0.8045	0.6465	yes	no
P25586	KRR1_YEAST	No assigned EC number	0.664	0.8013	0.7784	yes	no
O74777	KRR1_SCHPO	No assigned EC number	0.6587	0.8143	0.7645	yes	no
B3N899	KRR1_DROER	No assigned EC number	0.5371	0.9120	0.8115	N/A	no
Q8BGA5	KRR1_MOUSE	No assigned EC number	0.5629	0.8664	0.7	yes	no
B4P2Y8	KRR1_DROYA	No assigned EC number	0.5354	0.8990	0.8023	N/A	no
Q13601	KRR1_HUMAN	No assigned EC number	0.5629	0.8664	0.6981	yes	no
Q54UU6	KRR1_DICDI	No assigned EC number	0.5691	0.8143	0.6684	yes	no
B4KF66	KRR1_DROMO	No assigned EC number	0.5489	0.8990	0.8023	N/A	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Alignment Graph	Length	Definition	E-value
Query		307
COG1094		194	COG1094, COG1094, Predicted RNA-binding protein (c	2e-42
TIGR03665		172	TIGR03665, arCOG04150, arCOG04150 universal archae	2e-12
PRK13763		180	PRK13763, PRK13763, putative RNA-processing protei	3e-12

>gnl\|CDD\|224019 COG1094, COG1094, Predicted RNA-binding protein (contains KH domains) [General function prediction only]	Back alignment and domain information

 Score =  144 bits (366), Expect = 2e-42
 Identities = 44/133 (33%), Positives = 77/133 (57%), Gaps = 1/133 (0%)

Query: 7   KEYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDDEMQCD 66
           ++ GV   ++   GS+T+ TTRKT DP  ++KARD+++ + R  P  +A+K+L+D+   +
Sbjct: 35  EKTGVKLRIDSKTGSVTIRTTRKTEDPLALLKARDVVKAIGRGFPPEKALKLLEDDYYLE 94

Query: 67  IIKIGNLVRNKER-FVKRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMGSFKGLKQV 125
           +I + ++V        + +  ++G    T +A+E LTG YI V G TVA +G F+ ++  
Sbjct: 95  VIDLKDVVTLSGDHLRRIKGRIIGREGKTRRAIEELTGVYISVYGKTVAIIGGFEQVEIA 154

Query: 126 RRIVEDCMQNKMH 138
           R  VE  +    H
Sbjct: 155 REAVEMLINGAPH 167

Length = 194

>gnl\|CDD\|211858 TIGR03665, arCOG04150, arCOG04150 universal archaeal KH domain protein	Back alignment and domain information

>gnl\|CDD\|237494 PRK13763, PRK13763, putative RNA-processing protein; Provisional	Back alignment and domain information

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Alignment Graph	Length	Definition	Probability
Query		307
KOG2874		356	consensus rRNA processing protein [Translation, ri	100.0
COG1094		194	Predicted RNA-binding protein (contains KH domains	100.0
TIGR03665		172	arCOG04150 arCOG04150 universal archaeal KH domain	100.0
PRK13763		180	putative RNA-processing protein; Provisional	100.0
KOG3273		252	consensus Predicted RNA-binding protein Pno1p inte	100.0
TIGR03319		514	YmdA_YtgF conserved hypothetical protein YmdA/YtgF	99.0
PRK00106		535	hypothetical protein; Provisional	98.95
PRK12704		520	phosphodiesterase; Provisional	98.82
cd02395		120	SF1_like-KH Splicing factor 1 (SF1) K homology RNA	98.57
smart00322		69	KH K homology RNA-binding domain.	98.37
PRK12705		508	hypothetical protein; Provisional	98.37
PF00013		60	KH_1: KH domain syndrome, contains KH motifs.; Int	98.21
cd02394		62	vigilin_like_KH K homology RNA-binding domain_vigi	98.16
cd02393		61	PNPase_KH Polynucleotide phosphorylase (PNPase) K	98.15
cd00105		64	KH-I K homology RNA-binding domain, type I. KH bin	98.08
cd02396		65	PCBP_like_KH K homology RNA-binding domain, PCBP_l	97.41
PF13014		43	KH_3: KH domain	97.27
TIGR03665		172	arCOG04150 arCOG04150 universal archaeal KH domain	97.01
PRK13763		180	putative RNA-processing protein; Provisional	96.97
KOG1588		259	consensus RNA-binding protein Sam68 and related KH	96.6
KOG1676		600	consensus K-homology type RNA binding proteins [RN	96.29
COG5176		269	MSL5 Splicing factor (branch point binding protein	95.86
COG1847		208	Jag Predicted RNA-binding protein [General functio	95.43
KOG0119		554	consensus Splicing factor 1/branch point binding p	95.36
PRK04163		235	exosome complex RNA-binding protein Rrp4; Provisio	95.21
KOG2193		584	consensus IGF-II mRNA-binding protein IMP, contain	95.13
KOG1676		600	consensus K-homology type RNA binding proteins [RN	95.12
TIGR02696		719	pppGpp_PNP guanosine pentaphosphate synthetase I/p	95.0
PF13083		73	KH_4: KH domain; PDB: 3GKU_B.	94.91
TIGR03591		684	polynuc_phos polyribonucleotide nucleotidyltransfe	94.68
PRK01064		78	hypothetical protein; Provisional	92.28
cd02414		77	jag_KH jag_K homology RNA-binding domain. The KH d	91.97
KOG2193		584	consensus IGF-II mRNA-binding protein IMP, contain	91.93
PRK02821		77	hypothetical protein; Provisional	91.75
cd02134		61	NusA_KH NusA_K homology RNA-binding domain (KH). N	91.68
PLN00207		891	polyribonucleotide nucleotidyltransferase; Provisi	90.79
PRK00468		75	hypothetical protein; Provisional	90.69
COG1185		692	Pnp Polyribonucleotide nucleotidyltransferase (pol	89.68
cd02409		68	KH-II KH-II (K homology RNA-binding domain, type I	88.46
KOG2814		345	consensus Transcription coactivator complex, P50 c	86.74
PRK11824		693	polynucleotide phosphorylase/polyadenylase; Provis	86.17
COG1837		76	Predicted RNA-binding protein (contains KH domain)	85.8
KOG2190		485	consensus PolyC-binding proteins alphaCP-1 and rel	85.56
COG1097		239	RRP4 RNA-binding protein Rrp4 and related proteins	85.37
COG1702		348	PhoH Phosphate starvation-inducible protein PhoH,	84.44
COG1094		194	Predicted RNA-binding protein (contains KH domains	84.07
KOG2191		402	consensus RNA-binding protein NOVA1/PASILLA and re	83.06

>KOG2874 consensus rRNA processing protein [Translation, ribosomal structure and biogenesis; Cell cycle control, cell division, chromosome partitioning]	Back alignment and domain information

Probab=100.00  E-value=4.6e-104  Score=740.19  Aligned_cols=252  Identities=72%  Similarity=1.124  Sum_probs=246.8

Q ss_pred             CHHHHHhhhccEEEEEcCCCeEEEEcCCCCCChHHHHhHHHHHHHHHcCCChHHHHhhhccCceeEEEEcCccccChhhH
Q 021811            1 MVKGALKEYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDDEMQCDIIKIGNLVRNKERF   80 (307)
Q Consensus         1 ~v~~~le~~~i~i~lDl~egsV~V~tt~kT~DP~~ilKArD~IkAIaRGF~~E~AlkLLeDd~~~dIIdI~~~~~nke~f   80 (307)
                      +|++||++|+|.|.||+.+|+|+|+||++|||||+|++|||||++++||||+|||++||+||++||||+|+++++|+++|
T Consensus        77 ~v~raL~e~~i~c~lDL~egsm~V~TtRkT~DPyIiikArdlIKLlaRsVp~eqAvkiLqDev~CdiIkIgn~V~nkerF  156 (356)
T KOG2874|consen   77 LVERALDEHHIKCVLDLVEGSMTVKTTRKTRDPYIIIKARDLIKLLARSVPFEQAVKILQDEVACDIIKIGNLVRNKERF  156 (356)
T ss_pred             HHHHHHHhcCcceEEeeccceeEEeecccccCceeeeeHHHHHHHHHcCCCHHHHHHHHhhccceeeeehhhhhccHHHH
Confidence            58999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhhccccCCCCchHHHHHHHhCceEEEeCceEEEecCCCcHHHHHHHHHHHhcCCCchhHHHHHHHHHHhhhcCccccc
Q 021811           81 VKRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMGSFKGLKQVRRIVEDCMQNKMHPVYHIKILMVKKELEKDPALAN  160 (307)
Q Consensus        81 ~RrrgRIIG~~GkTkkaIE~LT~~yI~V~G~TVsIIG~~~~IkiAR~aIedlI~g~iHpVY~ikelmiKReL~kd~~l~~  160 (307)
                      ++||+|||||||.|++|||+||+|||+|||+|||+||+|.||++||++|+|||+| +||||||++|||||||++||+|+|
T Consensus       157 vKRRqRLiGpng~TLKAlelLT~CYilVqG~TVsaiGpfkGlkevr~IV~DcM~N-iHPiY~IK~LmiKRel~kd~~l~n  235 (356)
T KOG2874|consen  157 VKRRQRLIGPNGSTLKALELLTNCYILVQGNTVSAIGPFKGLKEVRKIVEDCMKN-IHPIYNIKTLMIKRELAKDPELAN  235 (356)
T ss_pred             HHHHHHhcCCCchhHHHHHHHhhcEEEeeCcEEEeecCcchHHHHHHHHHHHHhc-cchHHHHHHHHHHHHhhcChhhcc
Confidence            9999999999999999999999999999999999999999999999999999999 999999999999999999999999


Q ss_pred             ccccccchhccccccccccccc-cCCCCCCCCCCCCCCchhhhhhhccccccCchHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021811          161 ENWDRFLPKFKKKNVKQKKVKS-KEKKPYTPFPPPPQPSKIDKLLESGEYFLSERKKESKKWQEKQEKQAEKTAENKRKR  239 (307)
Q Consensus       161 e~W~rflp~fkk~~~~~~k~~~-~~kk~~tpfpp~~~~~k~d~~~esgeyfl~~~~k~~~~~~~~~~~q~~~~~~~~~~r  239 (307)
                      ||||||||+|+++|++++|+++ +.||+||||||+|++||||+|||||||||+++++++++++|+.++|+++..+++++|
T Consensus       236 e~W~rfLP~fkkknv~k~K~~K~~~kk~ytpfPp~q~~sKiD~eleSGEYFl~~~~k~~kK~~e~~Ekq~e~~~er~~~r  315 (356)
T KOG2874|consen  236 EDWSRFLPQFKKKNVKKRKPKKVKGKKEYTPFPPAQPPSKIDKELESGEYFLRDEEKSRKKMQEKKEKQAEKRKERQEER  315 (356)
T ss_pred             ccHHHHhHHhhhhhhhhcccccccCCCCCCCCCCCcCcchhhhhhhcchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999876 558999999999999999999999999999999999999999999999999999999


Q ss_pred             hhcCCCCCCCCCCC
Q 021811          240 DAAFIPPEEPSRQN  253 (307)
Q Consensus       240 ~~~~~~p~e~~~~~  253 (307)
                      .++|+||+|.+...
T Consensus       316 ~k~fi~peE~~~~~  329 (356)
T KOG2874|consen  316 MKAFIPPEEESRKP  329 (356)
T ss_pred             hhccCCCccccccc
Confidence            99999999987654

>COG1094 Predicted RNA-binding protein (contains KH domains) [General function prediction only]	Back alignment and domain information

>TIGR03665 arCOG04150 arCOG04150 universal archaeal KH domain protein	Back alignment and domain information

>PRK13763 putative RNA-processing protein; Provisional	Back alignment and domain information

>KOG3273 consensus Predicted RNA-binding protein Pno1p interacting with Nob1p and involved in 26S proteasome assembly [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>TIGR03319 YmdA_YtgF conserved hypothetical protein YmdA/YtgF	Back alignment and domain information

>PRK00106 hypothetical protein; Provisional	Back alignment and domain information

>PRK12704 phosphodiesterase; Provisional	Back alignment and domain information

>cd02395 SF1_like-KH Splicing factor 1 (SF1) K homology RNA-binding domain (KH)	Back alignment and domain information

>smart00322 KH K homology RNA-binding domain	Back alignment and domain information

>PRK12705 hypothetical protein; Provisional	Back alignment and domain information

>PF00013 KH_1: KH domain syndrome, contains KH motifs	Back alignment and domain information

>cd02394 vigilin_like_KH K homology RNA-binding domain_vigilin_like	Back alignment and domain information

>cd02393 PNPase_KH Polynucleotide phosphorylase (PNPase) K homology RNA-binding domain (KH)	Back alignment and domain information

>cd00105 KH-I K homology RNA-binding domain, type I	Back alignment and domain information

>cd02396 PCBP_like_KH K homology RNA-binding domain, PCBP_like	Back alignment and domain information

>PF13014 KH_3: KH domain	Back alignment and domain information

>TIGR03665 arCOG04150 arCOG04150 universal archaeal KH domain protein	Back alignment and domain information

>PRK13763 putative RNA-processing protein; Provisional	Back alignment and domain information

>KOG1588 consensus RNA-binding protein Sam68 and related KH domain proteins [RNA processing and modification]	Back alignment and domain information

>KOG1676 consensus K-homology type RNA binding proteins [RNA processing and modification]	Back alignment and domain information

>COG5176 MSL5 Splicing factor (branch point binding protein) [RNA processing and modification]	Back alignment and domain information

>COG1847 Jag Predicted RNA-binding protein [General function prediction only]	Back alignment and domain information

>KOG0119 consensus Splicing factor 1/branch point binding protein (RRM superfamily) [RNA processing and modification]	Back alignment and domain information

>PRK04163 exosome complex RNA-binding protein Rrp4; Provisional	Back alignment and domain information

>KOG2193 consensus IGF-II mRNA-binding protein IMP, contains RRM and KH domains [RNA processing and modification; General function prediction only]	Back alignment and domain information

>KOG1676 consensus K-homology type RNA binding proteins [RNA processing and modification]	Back alignment and domain information

>TIGR02696 pppGpp_PNP guanosine pentaphosphate synthetase I/polynucleotide phosphorylase	Back alignment and domain information

>PF13083 KH_4: KH domain; PDB: 3GKU_B	Back alignment and domain information

>TIGR03591 polynuc_phos polyribonucleotide nucleotidyltransferase	Back alignment and domain information

>PRK01064 hypothetical protein; Provisional	Back alignment and domain information

>cd02414 jag_KH jag_K homology RNA-binding domain	Back alignment and domain information

>KOG2193 consensus IGF-II mRNA-binding protein IMP, contains RRM and KH domains [RNA processing and modification; General function prediction only]	Back alignment and domain information

>PRK02821 hypothetical protein; Provisional	Back alignment and domain information

>cd02134 NusA_KH NusA_K homology RNA-binding domain (KH)	Back alignment and domain information

>PLN00207 polyribonucleotide nucleotidyltransferase; Provisional	Back alignment and domain information

>PRK00468 hypothetical protein; Provisional	Back alignment and domain information

>COG1185 Pnp Polyribonucleotide nucleotidyltransferase (polynucleotide phosphorylase) [Translation, ribosomal structure and biogenesis]	Back alignment and domain information

>cd02409 KH-II KH-II (K homology RNA-binding domain, type II)	Back alignment and domain information

>KOG2814 consensus Transcription coactivator complex, P50 component (LigT RNA ligase/phosphodiesterase family) [Transcription]	Back alignment and domain information

>PRK11824 polynucleotide phosphorylase/polyadenylase; Provisional	Back alignment and domain information

>COG1837 Predicted RNA-binding protein (contains KH domain) [General function prediction only]	Back alignment and domain information

>KOG2190 consensus PolyC-binding proteins alphaCP-1 and related KH domain proteins [RNA processing and modification; General function prediction only]	Back alignment and domain information

>COG1097 RRP4 RNA-binding protein Rrp4 and related proteins (contain S1 domain and KH domain) [Translation, ribosomal structure and biogenesis]	Back alignment and domain information

>COG1702 PhoH Phosphate starvation-inducible protein PhoH, predicted ATPase [Signal transduction mechanisms]	Back alignment and domain information

>COG1094 Predicted RNA-binding protein (contains KH domains) [General function prediction only]	Back alignment and domain information

>KOG2191 consensus RNA-binding protein NOVA1/PASILLA and related KH domain proteins [RNA processing and modification; General function prediction only]	Back alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Alignment Graph	Length	Definition	E-value
Query		307
2e3u_A		219	Crystal Structure Analysis Of Dim2p From Pyrococcus		4e-09

>pdb|2E3U|A Chain A, Crystal Structure Analysis Of Dim2p From Pyrococcus Horikoshii Ot3 Length = 219

Back alignment and structure

Iteration: 1

Score = 58.5 bits (140), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 35/145 (24%), Positives = 76/145 (52%), Gaps = 2/145 (1%) Query: 20 GSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDDEMQCDIIKIGNLVRNKER 79 G + +++T++T DP + KARD++ + R +A ++L++ +II + +++ E+ Sbjct: 74 GEVWITSTKETEDPLAVWKARDIVLAIGRGFSPERAFRLLNEGEYLEIINLTDIIIGNEK 133 Query: 80 --FVKRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMGSFKGLKQVRRIVEDCMQNKM 137 + R ++G T + +E ++G + V G TVA +G+ ++ + +E + Sbjct: 134 NALPRVRGRIIGRKGRTRQIIEEMSGASVSVYGKTVAIIGNPIQIEIAKTAIEKLARGSP 193 Query: 138 HPVYHIKILMVKKELEKDPALANEN 162 H + + KK+LE + A+ EN Sbjct: 194 HGSVYRYLERRKKDLELEGAMYYEN 218

PyMOL of 2e3u

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Alignment Graph	Length	Definition	E-value
Query		307
1tua_A		191	Hypothetical protein APE0754; structural genomics,	7e-47
2e3u_A		219	PH-DIM2P, hypothetical protein PH1566; PRE-ribosom	2e-39
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	9e-09
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-04
3lvg_D		190	LCB, clathrin light chain B; SELF assembly, coated	1e-04

>1tua_A Hypothetical protein APE0754; structural genomics, protein structure initiative, MCSG, four layers alpha-beta sandwich, PSI; 1.50A {Aeropyrum pernix} SCOP: d.51.1.1 d.51.1.1 Length = 191	Back alignment and structure

 Score =  155 bits (393), Expect = 7e-47
 Identities = 28/165 (16%), Positives = 76/165 (46%), Gaps = 3/165 (1%)

Query: 2   VKGALKEYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDD 61
               ++  G    ++     + V    +   P  ++KA ++++ +S   P  +A ++L++
Sbjct: 26  KAEIMRRTGTVITVDTENSMVIVEPEAEGIPPVNLMKAAEVVKAISLGFPPEKAFRLLEE 85

Query: 62  EMQCDIIKIGNLVRNKERFVKR-RQHLVGPNSSTLKALEILTGCYILVQGNTVAAMGSFK 120
           +    ++ +  +V + +  +KR +  ++G      + +E +T  YI V    VA +G ++
Sbjct: 86  DQILVVVDLKQVVGDSQNHLKRIKGRIIGEGGRARRTIEEMTDTYINVGEYEVAIIGDYE 145

Query: 121 GLKQVRRIVEDCMQNKMHPVYHIKILMVKKELEKDPALANENWDR 165
                ++ +E   + +MH   +  +  + +E+++   L  + W R
Sbjct: 146 RAMAAKQAIEMLAEGRMHSTVYRHLERIMREIKRRERL--KMWAR 188

PyMOL of 1tua

>2e3u_A PH-DIM2P, hypothetical protein PH1566; PRE-ribosomal RNA processing factor, RNA binding protein; 2.30A {Pyrococcus horikoshii} PDB: 3aev_B Length = 219	Back alignment and structure

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} Length = 190	Back alignment and structure

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Alignment Graph	Length	Definition	Probability
Query		307
1tua_A		191	Hypothetical protein APE0754; structural genomics,	100.0
2e3u_A		219	PH-DIM2P, hypothetical protein PH1566; PRE-ribosom	100.0
2jvz_A		164	KH type-splicing, FAR upstream element-binding pro	98.85
1j4w_A		174	FUSE binding protein; single-stranded DNA binding	98.75
2anr_A		178	Neuro-oncological ventral antigen 1; protein-RNA c	98.67
3krm_A		163	Insulin-like growth factor 2 mRNA-binding protein	98.59
2jzx_A		160	Poly(RC)-binding protein 2; PCBP2, KH domains, RNA	98.49
1dtj_A		76	RNA-binding neurooncological ventral antigen 2; KH	98.47
1ec6_A		87	RNA-binding protein NOVA-2; KH domain, alpha-beta	98.39
2opv_A		85	KHSRP protein; KH domain, RNA binding protein, KSR	98.36
1x4n_A		92	FAR upstream element binding protein 1; KH domain,	98.33
2p2r_A		76	Poly(RC)-binding protein 2; protein-DNA complex, R	98.32
1k1g_A		131	SF1-BO isoform; splicing, branch point sequence, p	98.32
2ctm_A		95	Vigilin; K homology type I domain, RNA-binding, ce	98.31
2hh2_A		107	KH-type splicing regulatory protein; KH-RNA bindin	98.31
2bl5_A		140	MGC83862 protein, quaking protein; STAR proteins,	98.28
1x4m_A		94	FAR upstream element binding protein 1; KH domain,	98.27
1zzk_A		82	Heterogeneous nuclear ribonucleoprotein K; KH domi	98.26
1vig_A		71	Vigilin; RNA-binding protein, ribonucleoprotein; N	98.24
1we8_A		104	Tudor and KH domain containing protein; structural	98.2
2yqr_A		119	KIAA0907 protein; structure genomics, KH domain, s	98.19
1j5k_A		89	Heterogeneous nuclear ribonucleoprotein K; single-	98.18
1wvn_A		82	Poly(RC)-binding protein 1; KH domain, RNA binding	98.15
2ctk_A		104	Vigilin; K homology type I domain, RNA-binding, ce	98.13
2qnd_A		144	FMR1 protein; KH domain, eukaryotic KH domains, ta	98.09
2ctl_A		97	Vigilin; K homology type I domain, RNA-binding, ce	98.08
2hh3_A		106	KH-type splicing regulatory protein; KH-RNA bindin	98.07
2axy_A		73	Poly(RC)-binding protein 2; protein-DNA complex, D	98.06
2cte_A		94	Vigilin; K homology type I domain, RNA-binding, ce	97.99
2dgr_A		83	Ring finger and KH domain-containing protein 1; st	97.94
2jvz_A		164	KH type-splicing, FAR upstream element-binding pro	97.67
2jzx_A		160	Poly(RC)-binding protein 2; PCBP2, KH domains, RNA	97.64
1j4w_A		174	FUSE binding protein; single-stranded DNA binding	97.5
2anr_A		178	Neuro-oncological ventral antigen 1; protein-RNA c	97.49
2ctj_A		95	Vigilin; K homology type I domain, RNA-binding, ce	97.48
3krm_A		163	Insulin-like growth factor 2 mRNA-binding protein	97.39
2cpq_A		91	FragIle X mental retardation syndrome related prot	97.01
2ctf_A		102	Vigilin; K homology type I domain, RNA-binding, ce	96.84
3u1k_A		630	Polyribonucleotide nucleotidyltransferase 1, MITO;	96.51
2e3u_A		219	PH-DIM2P, hypothetical protein PH1566; PRE-ribosom	95.91
3n89_A		376	Defective in GERM LINE development protein 3, ISO;	95.22
3n89_A		376	Defective in GERM LINE development protein 3, ISO;	94.43
4aid_A		726	Polyribonucleotide nucleotidyltransferase; transfe	93.08
3v69_A		140	Protein filia; RNA-binding, embryogenesis, KH doma	92.64
1tua_A		191	Hypothetical protein APE0754; structural genomics,	92.24
3gku_A		225	Probable RNA-binding protein; APC21302, clostridiu	88.31
2cpq_A		91	FragIle X mental retardation syndrome related prot	84.1

>1tua_A Hypothetical protein APE0754; structural genomics, protein structure initiative, MCSG, four layers alpha-beta sandwich, PSI; 1.50A {Aeropyrum pernix} SCOP: d.51.1.1 d.51.1.1	Back alignment and structure

Probab=100.00  E-value=7.3e-47  Score=336.34  Aligned_cols=150  Identities=16%  Similarity=0.349  Sum_probs=143.4

Q ss_pred             HHHhhhccEEEEEcCCCeEEEEcCCCCCChHHHHhHHHHHHHHHcCCChHHHHhhhccCceeEEEEcCcc-ccChhhHhh
Q 021811            4 GALKEYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDDEMQCDIIKIGNL-VRNKERFVK   82 (307)
Q Consensus         4 ~~le~~~i~i~lDl~egsV~V~tt~kT~DP~~ilKArD~IkAIaRGF~~E~AlkLLeDd~~~dIIdI~~~-~~nke~f~R   82 (307)
                      .+.+.+|+.|+||+.+|+|+|+||+.|+||++++||+|||+||+|||++++|++||+||++||+|+|+++ ++|++||+|
T Consensus        28 ~i~e~~g~~i~id~~~~~V~i~t~~~t~dp~~i~KA~dlI~ai~rgf~~e~A~~Ll~Dd~~~e~i~i~~~~~~~~~~~~r  107 (191)
T 1tua_A           28 EIMRRTGTVITVDTENSMVIVEPEAEGIPPVNLMKAAEVVKAISLGFPPEKAFRLLEEDQILVVVDLKQVVGDSQNHLKR  107 (191)
T ss_dssp             HHHHHHTEEEEEETTTTEEEEEESSTTSCHHHHHHHHHHHHHHHHTCCHHHHGGGGSTTEEEEEEETHHHHTTCHHHHHH
T ss_pred             HHHHHHCcEEEEEcCCCeEEEEeCCCCCCHHHHHHHHHHHHHHHcCCCHHHhhhcccCcceeEEEEcccccccCchhHHH
Confidence            3445699999999999999999999999999999999999999999999999999999999999999999 789999999


Q ss_pred             hhccccCCCCchHHHHHHHhCceEEEeCceEEEecCCCcHHHHHHHHHHHhcCCCc-hhHHHHHHHHHHhhhc
Q 021811           83 RRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMGSFKGLKQVRRIVEDCMQNKMH-PVYHIKILMVKKELEK  154 (307)
Q Consensus        83 rrgRIIG~~GkTkkaIE~LT~~yI~V~G~TVsIIG~~~~IkiAR~aIedlI~g~iH-pVY~ikelmiKReL~k  154 (307)
                      ++|||||++|+|+++||++|||||+|+|+||+|||+|+++++||++|++||.|++| |||++++.+ ++||..
T Consensus       108 ~~GrIIGk~G~tik~iE~~Tg~~I~v~~~~v~i~G~~~~i~~Ar~~i~~li~g~~h~~vy~~~~~~-~~~~k~  179 (191)
T 1tua_A          108 IKGRIIGEGGRARRTIEEMTDTYINVGEYEVAIIGDYERAMAAKQAIEMLAEGRMHSTVYRHLERI-MREIKR  179 (191)
T ss_dssp             HHHHHHCGGGHHHHHHHHHHTCEEEECSSEEEEEEEHHHHHHHHHHHHHHHTTCCHHHHHHHHHHH-HHHHHH
T ss_pred             HhhheeCCCccHHHHHHHHHCceEEEcCCEEEEEeChHHHHHHHHHHHHHHcCCCchhHHHHHHHH-HHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999 599999999 667743

PyMOL of 1tua

>2e3u_A PH-DIM2P, hypothetical protein PH1566; PRE-ribosomal RNA processing factor, RNA binding protein; 2.30A {Pyrococcus horikoshii} PDB: 3aev_B	Back alignment and structure

>2jvz_A KH type-splicing, FAR upstream element-binding protein 2; RNA binding protein, KH domain, KSRP, posttranscriptional regulation, mRNA decay; NMR {Homo sapiens}	Back alignment and structure

>1j4w_A FUSE binding protein; single-stranded DNA binding protein; HET: DNA; NMR {Homo sapiens} SCOP: d.51.1.1 d.51.1.1	Back alignment and structure

>2anr_A Neuro-oncological ventral antigen 1; protein-RNA complex, KH domain, hairpin, RNA-binding protein complex; HET: 5BU; 1.94A {Homo sapiens} PDB: 2ann_A*	Back alignment and structure

>3krm_A Insulin-like growth factor 2 mRNA-binding protein 1; KH domain, cell projection, cytoplasm, nucleus, phosphoprotein, translation regulation; 2.75A {Homo sapiens}	Back alignment and structure

>2jzx_A Poly(RC)-binding protein 2; PCBP2, KH domains, RNA binding, DNA-binding, nucleus, phosph ribonucleoprotein, RNA-binding, RNA binding protein; NMR {Homo sapiens}	Back alignment and structure

>1dtj_A RNA-binding neurooncological ventral antigen 2; KH domain, alpha-beta fold RNA-binding motif, immune system; 2.00A {Homo sapiens} SCOP: d.51.1.1 PDB: 1dt4_A	Back alignment and structure

>1ec6_A RNA-binding protein NOVA-2; KH domain, alpha-beta fold, RNA-binding motif, protein/RNA structure, RNA binding protein/RNA complex; 2.40A {Homo sapiens} SCOP: d.51.1.1	Back alignment and structure

>2opv_A KHSRP protein; KH domain, RNA binding protein, KSRP; NMR {Homo sapiens}	Back alignment and structure

>1x4n_A FAR upstream element binding protein 1; KH domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.51.1.1 PDB: 2opu_A	Back alignment and structure

>2p2r_A Poly(RC)-binding protein 2; protein-DNA complex, RNA and DNA binding protein/DNA complex; 1.60A {Homo sapiens}	Back alignment and structure

>1k1g_A SF1-BO isoform; splicing, branch point sequence, protein/RNA recognition, complex E, KH domain, QUA2 homology; NMR {Homo sapiens} SCOP: d.51.1.1	Back alignment and structure

>2ctm_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1	Back alignment and structure

>2hh2_A KH-type splicing regulatory protein; KH-RNA binding domain, RNA binding protein; NMR {Homo sapiens}	Back alignment and structure

>2bl5_A MGC83862 protein, quaking protein; STAR proteins, GSG proteins, RNA binding; NMR {Xenopus laevis} SCOP: d.51.1.1	Back alignment and structure

>1x4m_A FAR upstream element binding protein 1; KH domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.51.1.1	Back alignment and structure

>1zzk_A Heterogeneous nuclear ribonucleoprotein K; KH domian, alpha-beta fold, DNA binding protein; 0.95A {Homo sapiens} SCOP: d.51.1.1 PDB: 1zzj_A 1zzi_A	Back alignment and structure

>1vig_A Vigilin; RNA-binding protein, ribonucleoprotein; NMR {Homo sapiens} SCOP: d.51.1.1 PDB: 1vih_A	Back alignment and structure

>1we8_A Tudor and KH domain containing protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.51.1.1	Back alignment and structure

>2yqr_A KIAA0907 protein; structure genomics, KH domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}	Back alignment and structure

>1j5k_A Heterogeneous nuclear ribonucleoprotein K; single-stranded DNA binding protein, transcription factor, hnRNP K, CT element, C-MYC oncogene; NMR {Homo sapiens} SCOP: d.51.1.1 PDB: 1khm_A	Back alignment and structure

>1wvn_A Poly(RC)-binding protein 1; KH domain, RNA binding domain, RNA binding protein; 2.10A {Homo sapiens} SCOP: d.51.1.1	Back alignment and structure

>2ctk_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1	Back alignment and structure

>2qnd_A FMR1 protein; KH domain, eukaryotic KH domains, tandem KH domains, type I domains, fragIle X mental retardation protein, RNA BI protein; 1.90A {Homo sapiens} PDB: 2fmr_A	Back alignment and structure

>2ctl_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1	Back alignment and structure

>2hh3_A KH-type splicing regulatory protein; KH-RNA binding domain, RNA binding protein; NMR {Homo sapiens}	Back alignment and structure

>2axy_A Poly(RC)-binding protein 2; protein-DNA complex, DNA binding protein-DNA complex; 1.70A {Homo sapiens} SCOP: d.51.1.1 PDB: 2pqu_A 2py9_A 1ztg_A 3vke_A*	Back alignment and structure

>2cte_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1	Back alignment and structure

>2dgr_A Ring finger and KH domain-containing protein 1; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}	Back alignment and structure

>2jvz_A KH type-splicing, FAR upstream element-binding protein 2; RNA binding protein, KH domain, KSRP, posttranscriptional regulation, mRNA decay; NMR {Homo sapiens}	Back alignment and structure

>2jzx_A Poly(RC)-binding protein 2; PCBP2, KH domains, RNA binding, DNA-binding, nucleus, phosph ribonucleoprotein, RNA-binding, RNA binding protein; NMR {Homo sapiens}	Back alignment and structure

>1j4w_A FUSE binding protein; single-stranded DNA binding protein; HET: DNA; NMR {Homo sapiens} SCOP: d.51.1.1 d.51.1.1	Back alignment and structure

>2anr_A Neuro-oncological ventral antigen 1; protein-RNA complex, KH domain, hairpin, RNA-binding protein complex; HET: 5BU; 1.94A {Homo sapiens} PDB: 2ann_A*	Back alignment and structure

>2ctj_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1	Back alignment and structure

>3krm_A Insulin-like growth factor 2 mRNA-binding protein 1; KH domain, cell projection, cytoplasm, nucleus, phosphoprotein, translation regulation; 2.75A {Homo sapiens}	Back alignment and structure

>2cpq_A FragIle X mental retardation syndrome related protein 1, isoform B'; KH domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1	Back alignment and structure

>2ctf_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1	Back alignment and structure

>3u1k_A Polyribonucleotide nucleotidyltransferase 1, MITO; RNAse PH, KH domain, exoribonuclease; HET: CIT; 2.13A {Homo sapiens}	Back alignment and structure

>2e3u_A PH-DIM2P, hypothetical protein PH1566; PRE-ribosomal RNA processing factor, RNA binding protein; 2.30A {Pyrococcus horikoshii} PDB: 3aev_B	Back alignment and structure

>3n89_A Defective in GERM LINE development protein 3, ISO; KH domains, RNA binding, cell cycle; 2.79A {Caenorhabditis elegans}	Back alignment and structure

>3n89_A Defective in GERM LINE development protein 3, ISO; KH domains, RNA binding, cell cycle; 2.79A {Caenorhabditis elegans}	Back alignment and structure

>4aid_A Polyribonucleotide nucleotidyltransferase; transferase-peptide complex; 2.60A {Caulobacter vibrioides} PDB: 4aim_A 4am3_A	Back alignment and structure

>3v69_A Protein filia; RNA-binding, embryogenesis, KH domain, RNA binding, P binding; 2.20A {Mus musculus}	Back alignment and structure

>1tua_A Hypothetical protein APE0754; structural genomics, protein structure initiative, MCSG, four layers alpha-beta sandwich, PSI; 1.50A {Aeropyrum pernix} SCOP: d.51.1.1 d.51.1.1	Back alignment and structure

>3gku_A Probable RNA-binding protein; APC21302, clostridium symbiosum ATCC 14 structural genomics, PSI-2, protein structure initiative; 2.95A {Clostridium symbiosum atcc 14940}	Back alignment and structure

>2cpq_A FragIle X mental retardation syndrome related protein 1, isoform B'; KH domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1	Back alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	E-value
Query		307
d1tuaa2		104	d.51.1.1 (A:85-188) Hypothetical protein APE0754 {	2e-21

>d1tuaa2 d.51.1.1 (A:85-188) Hypothetical protein APE0754 {Aeropyrum pernix [TaxId: 56636]} Length = 104	Back information, alignment and structure


class: Alpha and beta proteins (a+b)
fold: Eukaryotic type KH-domain (KH-domain type I)
superfamily: Eukaryotic type KH-domain (KH-domain type I)
family: Eukaryotic type KH-domain (KH-domain type I)
domain: Hypothetical protein APE0754
species: Aeropyrum pernix [TaxId: 56636]

 Score = 84.8 bits (210), Expect = 2e-21
 Identities = 21/102 (20%), Positives = 49/102 (48%), Gaps = 5/102 (4%)

Query: 66  DIIKIGNLVRNKERFVKR-RQHLVGPNSSTLKALEILTGCYILVQGNTVAAMGSFKGLKQ 124
            ++ +  +V + +  +KR +  ++G      + +E +T  YI V    VA +G ++    
Sbjct: 5   VVVDLKQVVGDSQNHLKRIKGRIIGEGGRARRTIEEMTDTYINVGEYEVAIIGDYERAMA 64

Query: 125 VRRIVEDCMQNKMHP-VYHIKILMVKKELEKDPALANENWDR 165
            ++ +E   + +MH  VY   +  + +E+++   L  + W R
Sbjct: 65  AKQAIEMLAEGRMHSTVYRH-LERIMREIKRRERL--KMWAR 103

PyMOL of d1tuaa2

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	Probability
Query		307
d1tuaa2		104	Hypothetical protein APE0754 {Aeropyrum pernix [Ta	99.94
d1tuaa1		84	Hypothetical protein APE0754 {Aeropyrum pernix [Ta	99.02
d2ba0a3		84	Exosome complex RNA-binding protein 1, ECR1 {Archa	98.56
d2z0sa2		87	Exosome complex RNA-binding protein 1, ECR1 {Aerop	98.37
d2ctma1		81	Vigilin {Human (Homo sapiens) [TaxId: 9606]}	98.28
d1j4wa2		71	Far upstream binding element, FBP {Human (Homo sap	98.19
d2je6i3		69	Exosome complex RNA-binding protein 1, ECR1 {Sulfo	98.15
d1viga_		71	Vigilin {Human (Homo sapiens) [TaxId: 9606]}	98.14
d2ctla1		84	Vigilin {Human (Homo sapiens) [TaxId: 9606]}	98.11
d1zzka1		75	HnRNP K, KH3 {Human (Homo sapiens) [TaxId: 9606]}	98.1
d1x4ma1		81	Far upstream binding element, FBP {Mouse (Mus musc	98.1
d1x4na1		79	Far upstream binding element, FBP {Mouse (Mus musc	98.09
d1j4wa1		74	Far upstream binding element, FBP {Human (Homo sap	98.08
d1dtja_		74	Neuro-oncological ventral antigen 2, nova-2, KH3 {	98.07
d1wvna1		70	Poly(RC)-binding protein 1 {Human (Homo sapiens) [	98.0
d2ctea1		81	Vigilin {Human (Homo sapiens) [TaxId: 9606]}	97.98
d1k1ga_		122	RNA splicing factor 1 {Human (Homo sapiens) [TaxId	97.93
d2axya1		71	Poly(RC)-binding protein 2 {Human (Homo sapiens) [	97.93
d2ctka1		91	Vigilin {Human (Homo sapiens) [TaxId: 9606]}	97.93
d1we8a_		104	Tudor and KH domain containing protein, Tdrkh {Mou	97.92
d2bl5a1		134	Quaking protein A (Xqua) {African clawed frog (Xen	97.78
d2ctja1		82	Vigilin {Human (Homo sapiens) [TaxId: 9606]}	97.77
d2cpqa1		78	Fragile X mental retardation syndrome related prot	97.74
d2ctfa1		90	Vigilin {Human (Homo sapiens) [TaxId: 9606]}	97.74
d1tuaa1		84	Hypothetical protein APE0754 {Aeropyrum pernix [Ta	97.56
d1e3ha4		54	Polynucleotide phosphorylase/guanosine pentaphosph	96.99
d2ja9a2		85	Ribosomal RNA-processing protein 40, RRP40 {Saccha	90.88

>d1tuaa2 d.51.1.1 (A:85-188) Hypothetical protein APE0754 {Aeropyrum pernix [TaxId: 56636]}	Back information, alignment and structure

class: Alpha and beta proteins (a+b)
fold: Eukaryotic type KH-domain (KH-domain type I)
superfamily: Eukaryotic type KH-domain (KH-domain type I)
family: Eukaryotic type KH-domain (KH-domain type I)
domain: Hypothetical protein APE0754
species: Aeropyrum pernix [TaxId: 56636]

Probab=99.94  E-value=1e-28  Score=199.99  Aligned_cols=101  Identities=19%  Similarity=0.406  Sum_probs=92.9

Q ss_pred             CceeEEEEcCccccCh-hhHhhhhccccCCCCchHHHHHHHhCceEEEeCceEEEecCCCcHHHHHHHHHHHhcCCCch-
Q 021811           62 EMQCDIIKIGNLVRNK-ERFVKRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMGSFKGLKQVRRIVEDCMQNKMHP-  139 (307)
Q Consensus        62 d~~~dIIdI~~~~~nk-e~f~RrrgRIIG~~GkTkkaIE~LT~~yI~V~G~TVsIIG~~~~IkiAR~aIedlI~g~iHp-  139 (307)
                      |++|+||||++++++. +++.|.||||||++|+|+++||.+|||+|.|+|+||+++|+++++..|+++|++|+.|..|+ 
T Consensus         1 d~~l~iidi~~~~~~~~~~l~R~~GrIIG~gGktik~Ie~~Tg~~I~I~d~~v~iig~~e~i~~A~~~Ie~li~~~e~g~   80 (104)
T d1tuaa2           1 DQILVVVDLKQVVGDSQNHLKRIKGRIIGEGGRARRTIEEMTDTYINVGEYEVAIIGDYERAMAAKQAIEMLAEGRMHST   80 (104)
T ss_dssp             TEEEEEEETHHHHTTCHHHHHHHHHHHHCGGGHHHHHHHHHHTCEEEECSSEEEEEEEHHHHHHHHHHHHHHHTTCCHHH
T ss_pred             CceEEEEEHHHhhcccHHHHHHHhcceeCCCcHHHHHHHHHHCCeEEEeCCeEEEEECchhHHHHHHHHHHHHcCCCccH
Confidence            6899999999999855 56667799999999999999999999999999999999999999999999999999998887 


Q ss_pred             hHHHHHHHHHHhhhcCcccccccccc
Q 021811          140 VYHIKILMVKKELEKDPALANENWDR  165 (307)
Q Consensus       140 VY~ikelmiKReL~kd~~l~~e~W~r  165 (307)
                      ||++++ ..++||..+..|  ++|+|
T Consensus        81 VY~~le-~~~~elk~~~~~--~~w~~  103 (104)
T d1tuaa2          81 VYRHLE-RIMREIKRRERL--KMWAR  103 (104)
T ss_dssp             HHHHHH-HHHHHHHHHHHH--HHHHH
T ss_pred             HHHHHH-HHHHHHHHHHHH--Hhhcc
Confidence            999998 678899987776  77987

PyMOL of d1tuaa2

>d1tuaa1 d.51.1.1 (A:1-84) Hypothetical protein APE0754 {Aeropyrum pernix [TaxId: 56636]}	Back information, alignment and structure

>d2ba0a3 d.51.1.1 (A:136-219) Exosome complex RNA-binding protein 1, ECR1 {Archaeoglobus fulgidus [TaxId: 2234]}	Back information, alignment and structure

>d2z0sa2 d.51.1.1 (A:148-234) Exosome complex RNA-binding protein 1, ECR1 {Aeropyrum pernix [TaxId: 56636]}	Back information, alignment and structure

>d2ctma1 d.51.1.1 (A:8-88) Vigilin {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1j4wa2 d.51.1.1 (A:104-174) Far upstream binding element, FBP {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d2je6i3 d.51.1.1 (I:153-221) Exosome complex RNA-binding protein 1, ECR1 {Sulfolobus solfataricus [TaxId: 2287]}	Back information, alignment and structure

>d1viga_ d.51.1.1 (A:) Vigilin {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d2ctla1 d.51.1.1 (A:8-91) Vigilin {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1zzka1 d.51.1.1 (A:11-85) HnRNP K, KH3 {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1x4ma1 d.51.1.1 (A:8-88) Far upstream binding element, FBP {Mouse (Mus musculus) [TaxId: 10090]}	Back information, alignment and structure

>d1x4na1 d.51.1.1 (A:8-86) Far upstream binding element, FBP {Mouse (Mus musculus) [TaxId: 10090]}	Back information, alignment and structure

>d1j4wa1 d.51.1.1 (A:1-74) Far upstream binding element, FBP {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1dtja_ d.51.1.1 (A:) Neuro-oncological ventral antigen 2, nova-2, KH3 {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1wvna1 d.51.1.1 (A:5-74) Poly(RC)-binding protein 1 {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d2ctea1 d.51.1.1 (A:8-88) Vigilin {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1k1ga_ d.51.1.1 (A:) RNA splicing factor 1 {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d2axya1 d.51.1.1 (A:11-81) Poly(RC)-binding protein 2 {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d2ctka1 d.51.1.1 (A:8-98) Vigilin {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1we8a_ d.51.1.1 (A:) Tudor and KH domain containing protein, Tdrkh {Mouse (Mus musculus) [TaxId: 10090]}	Back information, alignment and structure

>d2bl5a1 d.51.1.1 (A:1-134) Quaking protein A (Xqua) {African clawed frog (Xenopus laevis) [TaxId: 8355]}	Back information, alignment and structure

>d2ctja1 d.51.1.1 (A:8-89) Vigilin {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d2cpqa1 d.51.1.1 (A:212-289) Fragile X mental retardation syndrome related protein 1, FXR1 {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d2ctfa1 d.51.1.1 (A:7-96) Vigilin {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1tuaa1 d.51.1.1 (A:1-84) Hypothetical protein APE0754 {Aeropyrum pernix [TaxId: 56636]}	Back information, alignment and structure

>d1e3ha4 d.52.3.1 (A:579-632) Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 6 {Streptomyces antibioticus [TaxId: 1890]}	Back information, alignment and structure

>d2ja9a2 d.51.1.1 (A:152-236) Ribosomal RNA-processing protein 40, RRP40 {Saccharomyces cerevisiae [TaxId: 4932]}	Back information, alignment and structure