Citrus Sinensis ID: 021849

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300------
Protein Sequence
MNYAIPLYQCRKDEASGKVQFSCTVEIGDIRYIGGAAKTKKEAEIKAARTALLAIQSSASELSGNSAGNTQLTVLPSRKRGPEVANNPEETVNVPKAKKGRFKKKILKMKRPGGRMDRTQLQNTGNMENINASQEGSKVSQANTSGIQGVSTEVLAVEGTMDCQEGRSEIEPIEREMPAVNDALPHHIGGDSETIHSAATHCSDRSSNEASEMGTSSLAKEVNEVTPGVGTSSVSCHTTALAKEVNEGTPNEGTSTALTEEVNEPSGIMEAASMTNNSTLGQIESSCVIPGINQPEERIQAGTSQA
Secondary Structure (PSIPRED)
ccccccEEEEEEccccccccEEEEEEEccEEEEccccHHHHHHHHHHHHHHHHHHHHHHccccccccccccEEEEcccccccccccccccccccccccccccHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHcccccccccccccccccccccccccEEccccccccccccccccccccccccHHHHHHccccc
Secondary Structure Prediction (SSPRO)
cccccEEEEEEcccccccEEEEEEEEEccEEEEcHHHHcHHHHHHHHHHHHHHHHHccccccccccccccEEEEEccccccEEcccccccccccccHHHcccHHHHccccccccccccccccccccccEcccccccccccccccccccccccEEEEEEcccccccccEcccccccccccccccccccccccccccEEccccccccccccccEHcccccHHHHHccccccccccEEEcccHHHHEEcccccccccccccccccccccHHHHHHHHHHHHHHHHEcccEEccccccccHHEEcccccc
Coil and Loop (DISEMBL)
mnyaiplyqcrkdeasgkvqfSCTVEIGDIRYIGGAAKTKKEAEIKAARTALLAIQSSaselsgnsagntqltvlpsrkrgpevannpeetvnvpkakkgrfKKKILKmkrpggrmdrtqlqntgnmeninasqegskvsqantsgiqgvSTEVLAVEgtmdcqegrseiepierempavndalphhiggdsetihsaathcsdrssneasemGTSSLAKEvnevtpgvgtssvsCHTTALAKEvnegtpnegtstalteevnepsgimeaasmtnnstlgqiesscvipginqpeeriqagtsqa
Flexible Loop (DISEMBL)
mnyaiplyqcrkdeasgkvQFSCTVEIGDIRYIGGAAKTKKEAEIKAARTALLAIQSsaselsgnsagntqltvlpsrkrgpevannpeetvnvpkakkgrfkkkilkmkrpggrmdrtqlqntgNMENINASQEGSKVSQANTSGIQGVSTEVLAVEGTMDCQEGRSEIEPIEREMPAVNDALPHHIGGDSETIHSAATHCSDRSSNEASEMGTSSLAKEVNEVTPGVGTSSVSCHTTALAkevnegtpnegtstalteevnEPSGIMEAASMTNNSTLGQIESSCVIPGINqpeeriqagtsqa
Low Complexity Region (SEG)
MNYAIPLYQCRKDEASGKVQFSCTVEIGDIRYiggaaktkkeaeikaartaLLAIQSSASELSGNSAGNTQLTVLPSRKRGPEVANNPEETVNVPKAKKGRFKKKILKMKRPGGRMDRTQLQNTGNMENINASQEGSKVSQANTSGIQGVSTEVLAVEGTMDCQEGRSEIEPIEREMPAVNDALPHHIGGDSETIHSAATHCSDRSSNEASEMGTSSLAKEVNEVTPGVGTSSVSCHTTALAKEVNEGTPNEGTSTALTEEVNEPSGIMEAASMTNNSTLGQIESSCVIPGINQPEERIQAGTSQA
Disordered region (IsUnstruct)
***AIPLYQCRKDEASGKVQFSCTVEIGDIRYIGGAAKTK****IKAARTALL*************************************************************************************************************************************************************************************************************************************************************
Disordered Region (DISOPRED)
**YAIPLYQCRKDEASGKVQFSCTVEIGDIRYI****************TALL********************************************************************************************************************************************************************************************************************************STLGQIESSCVIPGINQPE**********
Disordered Region (DISEMBL)
MNYAIPLYQCRKDEASGKVQFSCTVEIGDIRYIGGAAKTKKEAEIKAARTALLAIQSSASELSGNSAGNTQLTVLPSRKRGPEVANNPEETVNVPKAKKGRFKKKILKMKRPGGRMDRTQLQNTGNMENINAS************GIQGVSTEVLAVEGTMDCQEGRSEIEPIEREMPAVNDALPHHIGGDSETIHSA******************SLAKEVNEV**********CHTTALAKEVNEGTPNEGTSTALTEEVNEPSGIMEAASMTNNSTLGQIESSCVIPGINQPEER********
Disordered Region (DISPRO)
*NYAIPLYQCRKDEASGKVQFSCTVEIGDIRYIGGAAKTKKEAEIKAARTALLAIQSSASE******GNTQLTVLPSRKRGPEVANNPEETVNVPKAKKGRF***********************************************VSTEVLAVEGTMDCQEGRSEIEPIEREMPAVNDALPHHIGGDSETIHSAATHCSDRSS*EASEMGTSSLAKEVNEVTPGVGTSSVSCHTTALAKEVNEG*****TSTALTEEVNEPSGIMEAASMTNNSTLGQIESSCVIPGINQPE**IQA*****
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MNYAIPLYQCRKDEASGKVQFSCTVEIGDIRYIGGAAKTKKEAEIKAARTALLAIQSSASELSGNSAGNTQLTVLPSRKRGPEVANNPEETVNVPKAKKGRFKKKILKMKRPGGRMDRTQLQNTGNMENINASQEGSKVSQANTSGIQGVSTEVLAVEGTMDCQEGRSEIEPIEREMPAVNDALPHHIGGDSETIHSAATHCSDRSSNEASEMGTSSLAKEVNEVTPGVGTSSVSCHTTALAKEVNEGTPNEGTSTALTEEVNEPSGIMEAASMTNNSTLGQIESSCVIPGINQPEERIQAGTSQA
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	306	2.2.26 [Sep-21-2011]
O04492	419	Double-stranded RNA-bindi	yes	no	0.313	0.229	0.585	5e-22
Q0IQN6	424	Double-stranded RNA-bindi	yes	no	0.284	0.205	0.582	3e-19
Q0DJA3	437	Double-stranded RNA-bindi	no	no	0.284	0.199	0.582	3e-19
Q0IV63	473	Double-stranded RNA-bindi	no	no	0.284	0.183	0.582	3e-19

>sp|O04492|DRB1_ARATH Double-stranded RNA-binding protein 1 OS=Arabidopsis thaliana GN=DRB1 PE=1 SV=1

 Score =  105 bits (261), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 58/99 (58%), Positives = 68/99 (68%), Gaps = 3/99 (3%)

Query: 1   MNYAIPLYQCRKDEASGKV-QFSCTVEIGDIRYIGGAAKTKKEAEIKAARTALLAIQSSA 59
           MNYAIPLYQC+K E  G+V QF+CTVEIG I+Y G A +TKK+AEI A RTALLAIQS  
Sbjct: 113 MNYAIPLYQCQKVETLGRVTQFTCTVEIGGIKYTGAATRTKKDAEISAGRTALLAIQSDT 172

Query: 60  SELSGNSAGNTQLTVLPSRKRGPEVANNPEETVNVPKAK 98
                N   NTQLTVLP  K+  + A   +ETV   KA+
Sbjct: 173 KNNLANY--NTQLTVLPCEKKTIQAAIPLKETVKTLKAR 209

Double-stranded RNA-binding protein involved in RNA-mediated post-transcriptional gene silencing (PTGS). Functions in the microRNAs (miRNAs) biogenesis by assisting DICER-LIKE 1 (DCL1) in the accurate processing from primary miRNAs (pri-miRNAs) to miRNAs in the nucleus. Forms a complex with SERRATE (SE) and DCL1 to promote accurate processing of pri-miRNAs by DCL1. Binds and assist DCL1 for accurate processing of precursor miRNAs (pre-miRNA). Indirectly involved in the production of trans-acting small interfering RNAs (ta-siRNAs) derived from the TAS1, TAS2 or TAS3 endogenous transcripts by participating in the production of their initiating miRNAs. Involved with argonaute 1 (AGO1) in the guide strand selection from miRNA duplexes, presumably by directional loading of the miRNA duplex (guide stand and passenger strand) onto the RNA-induced silencing complex (RISC) for passenger strand degradation. Does not participate in sense transgene-induced post-transcriptional gene silencing (S-PTGS). Involved in several plant development aspects and response to hormones through its role in miRNAs processing.
Arabidopsis thaliana (taxid: 3702)

>sp|Q0IQN6|DRB8_ORYSJ Double-stranded RNA-binding protein 8 OS=Oryza sativa subsp. japonica GN=DRB8 PE=2 SV=1

 Score = 96.3 bits (238), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 53/91 (58%), Positives = 63/91 (69%), Gaps = 4/91 (4%)

Query: 1   MNYAIPLYQCRKDEASGKVQFSCTVEIGDIRYIGGAAKTKKEAEIKAARTALLAIQSSAS 60
           MNYAIP Y C K  ASG   F CTVEIG I+YIG AA+TKK+AEIKAARTALLAIQ  + 
Sbjct: 130 MNYAIPSYICTKS-ASGLAPFICTVEIGGIQYIGAAARTKKDAEIKAARTALLAIQGQS- 187

Query: 61  ELSGNSAGNTQLTVLPSRKRGPEVANNPEET 91
              G++ G T+  V+P ++ G EV   P ET
Sbjct: 188 --EGSANGATKYIVVPGKRVGKEVEKRPIET 216

Binds double-stranded RNA.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q0DJA3|DRB3_ORYSJ Double-stranded RNA-binding protein 3 OS=Oryza sativa subsp. japonica GN=DRB3 PE=2 SV=1

 Score = 95.9 bits (237), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 53/91 (58%), Positives = 63/91 (69%), Gaps = 4/91 (4%)

Query: 1   MNYAIPLYQCRKDEASGKVQFSCTVEIGDIRYIGGAAKTKKEAEIKAARTALLAIQSSAS 60
           MNYAIP Y C K  ASG   F CTVEIG I+YIG AA+TKK+AEIKAARTALLAIQ  + 
Sbjct: 132 MNYAIPSYICTKP-ASGLAPFLCTVEIGGIQYIGAAARTKKDAEIKAARTALLAIQGQS- 189

Query: 61  ELSGNSAGNTQLTVLPSRKRGPEVANNPEET 91
              G++ G T+  V+P ++ G EV   P ET
Sbjct: 190 --EGSANGATKYIVVPGKRVGKEVEKRPIET 218

Binds double-stranded RNA.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q0IV63|DRB7_ORYSJ Double-stranded RNA-binding protein 7 OS=Oryza sativa subsp. japonica GN=DRB7 PE=2 SV=1

 Score = 95.9 bits (237), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 53/91 (58%), Positives = 63/91 (69%), Gaps = 4/91 (4%)

Query: 1   MNYAIPLYQCRKDEASGKVQFSCTVEIGDIRYIGGAAKTKKEAEIKAARTALLAIQSSAS 60
           MNYAIP Y C K  ASG   F CTVEIG I+YIG AA+TKK+AEIKAARTALLAIQ  + 
Sbjct: 130 MNYAIPSYICTKS-ASGLAPFICTVEIGGIQYIGAAARTKKDAEIKAARTALLAIQGQS- 187

Query: 61  ELSGNSAGNTQLTVLPSRKRGPEVANNPEET 91
              G++ G T+  V+P ++ G EV   P ET
Sbjct: 188 --EGSANGATKYIVVPGKRVGKEVEKMPIET 216

Binds double-stranded RNA.

Oryza sativa subsp. japonica (taxid: 39947)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	306
255545990	361	conserved hypothetical protein [Ricinus	0.614	0.520	0.546	1e-38
225459069	400	PREDICTED: double-stranded RNA-binding p	0.732	0.56	0.421	2e-36
302142076	415	unnamed protein product [Vitis vinifera]	0.545	0.402	0.502	3e-36
356510122	359	PREDICTED: double-stranded RNA-binding p	0.545	0.465	0.526	9e-34
356515734	359	PREDICTED: double-stranded RNA-binding p	0.477	0.406	0.556	2e-33
255637537	359	unknown [Glycine max]	0.477	0.406	0.556	2e-33
224067130	355	predicted protein [Populus trichocarpa]	0.784	0.676	0.404	1e-31
449470070	344	PREDICTED: double-stranded RNA-binding p	0.336	0.299	0.626	6e-27
449511425	351	PREDICTED: double-stranded RNA-binding p	0.336	0.293	0.626	6e-27
357465225	780	DsRNA-binding protein [Medicago truncatu	0.483	0.189	0.490	6e-26

>gi|255545990|ref|XP_002514055.1| conserved hypothetical protein [Ricinus communis] gi|223547141|gb|EEF48638.1| conserved hypothetical protein [Ricinus communis]

 Score =  166 bits (421), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 105/192 (54%), Positives = 128/192 (66%), Gaps = 4/192 (2%)

Query: 1   MNYAIPLYQCRKDEASGK-VQFSCTVEIGDIRYIGGAAKTKKEAEIKAARTALLAIQSSA 59
           MNYAIPLY C+K+E+ G+   F CTVEIG I YIG +AKTKKEAEIKAARTALLAIQ SA
Sbjct: 114 MNYAIPLYLCQKNESPGRGTLFKCTVEIGGIHYIGASAKTKKEAEIKAARTALLAIQLSA 173

Query: 60  SELSGNSAGNTQLTVLPSRKRGPEVANNPEETVNVPKAKKGRFKKKILKMKRPGGRMDRT 119
           SE S NS GN QLTV+P RKRG E A   EE +NVPKAKK RF+KK LK K  G ++D  
Sbjct: 174 SESSHNSIGNCQLTVIPFRKRGAETAAVLEEAMNVPKAKKARFRKKTLKKKHSGNKVDHN 233

Query: 120 QLQNTGNMENINASQEGSKVSQANTSGIQGVSTEVLAVEGTMDCQEGRSEIEPIEREMPA 179
           Q +  GN ++    Q GS+  + + S +QG   ++L +  T + ++GR   E  ERE   
Sbjct: 234 QGETIGNKKD---GQAGSESDKNDASVVQGTGHQLLPMLSTSNSEDGRLVPESSERETTD 290

Query: 180 VNDALPHHIGGD 191
           V  AL  HI GD
Sbjct: 291 VTGALVCHISGD 302

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225459069|ref|XP_002285663.1| PREDICTED: double-stranded RNA-binding protein 1 [Vitis vinifera] gi|147781065|emb|CAN68128.1| hypothetical protein VITISV_043706 [Vitis vinifera]

 Score =  158 bits (400), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 100/237 (42%), Positives = 143/237 (60%), Gaps = 13/237 (5%)

Query: 1   MNYAIPLYQCRKDEASGKV-QFSCTVEIGDIRYIGGAAKTKKEAEIKAARTALLAIQSSA 59
           MNYAIP+Y C+KDE+ G+   FSCTVEIG IRYIG AA+TKKEAEIKAARTALLAI+++ 
Sbjct: 113 MNYAIPMYVCQKDESPGRAASFSCTVEIGGIRYIGAAARTKKEAEIKAARTALLAIRANT 172

Query: 60  SELSGNSAGNTQLTVLPSRKRGPEVANNPEETVNVPKAKKGRFKKKILKMKRPGGRMDRT 119
             +   S GNTQLTV+P +K+GPE + NP+E     K KK RFK K L+ K PG ++   
Sbjct: 173 DGVGEKSIGNTQLTVIPGKKKGPE-SGNPDEPAKALKPKKARFKTKGLRKKFPGNKVGND 231

Query: 120 QLQNTGNMENINASQEGSKVSQANTSGIQGVSTEVLAVEGTMDCQEGRSEI-EPIEREMP 178
           Q+++T  ME    +Q GS++ Q + S +Q   + +L++E   + +E +S + +    +  
Sbjct: 232 QVEDTRGMEVDIDNQVGSELLQTDASMVQVAESGLLSMESKENFEEEKSIVNQNGGDKTV 291

Query: 179 AVNDALPHHIGGDSETIHSAATHCSDRSSNEASEMGTSSL---------AKEVNEVT 226
           A  D +P  I G+ +   + A+           E+G SS+         A EVN V+
Sbjct: 292 AEGDPIPDII-GNCQNGQATASDIKKTDHKAPPELGISSMSPAEVLVSVAMEVNNVS 347

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|302142076|emb|CBI19279.3| unnamed protein product [Vitis vinifera]

 Score =  158 bits (400), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 85/169 (50%), Positives = 117/169 (69%), Gaps = 2/169 (1%)

Query: 1   MNYAIPLYQCRKDEASGKV-QFSCTVEIGDIRYIGGAAKTKKEAEIKAARTALLAIQSSA 59
           MNYAIP+Y C+KDE+ G+   FSCTVEIG IRYIG AA+TKKEAEIKAARTALLAI+++ 
Sbjct: 113 MNYAIPMYVCQKDESPGRAASFSCTVEIGGIRYIGAAARTKKEAEIKAARTALLAIRANT 172

Query: 60  SELSGNSAGNTQLTVLPSRKRGPEVANNPEETVNVPKAKKGRFKKKILKMKRPGGRMDRT 119
             +   S GNTQLTV+P +K+GPE + NP+E     K KK RFK K L+ K PG ++   
Sbjct: 173 DGVGEKSIGNTQLTVIPGKKKGPE-SGNPDEPAKALKPKKARFKTKGLRKKFPGNKVGND 231

Query: 120 QLQNTGNMENINASQEGSKVSQANTSGIQGVSTEVLAVEGTMDCQEGRS 168
           Q+++T  ME    +Q GS++ Q + S +Q   + +L++E   + +E +S
Sbjct: 232 QVEDTRGMEVDIDNQVGSELLQTDASMVQVAESGLLSMESKENFEEEKS 280

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356510122|ref|XP_003523789.1| PREDICTED: double-stranded RNA-binding protein 1-like [Glycine max]

 Score =  150 bits (378), Expect = 9e-34,   Method: Compositional matrix adjust.
 Identities = 89/169 (52%), Positives = 104/169 (61%), Gaps = 2/169 (1%)

Query: 1   MNYAIPLYQCRKDEASGKVQ-FSCTVEIGDIRYIGGAAKTKKEAEIKAARTALLAIQSSA 59
           MNYA+P+YQC+KDE  G+   FSCTV+IG I YIGGAAKTKKEAEIKAARTALLAIQSSA
Sbjct: 113 MNYAMPMYQCKKDETPGRASVFSCTVDIGGILYIGGAAKTKKEAEIKAARTALLAIQSSA 172

Query: 60  SELSGNSAGNTQLTVLPSRKRGPEVANNPEETVNVPKAKKGRFKKKILKMKRPGGRMDRT 119
           S  S N  G+ QLTVLP RKR        +E  N PK KK RFK+K  K K    +M + 
Sbjct: 173 SHASENQVGHPQLTVLPCRKRATSSVAIADENSNPPKPKKARFKRKSSKRKPSRDKMGQI 232

Query: 120 QLQNTGNMENINASQEGSKVSQANTSGIQGVSTEVLAVEGTMDCQEGRS 168
             +N G  E IN   E +  S    SG+    TE    E T + + G S
Sbjct: 233 HTENLGIGEIINHEVE-THASVNGESGLLEKKTETFTSEATNNFENGVS 280

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356515734|ref|XP_003526553.1| PREDICTED: double-stranded RNA-binding protein 1-like [Glycine max]

 Score =  149 bits (376), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 84/151 (55%), Positives = 100/151 (66%), Gaps = 5/151 (3%)

Query: 1   MNYAIPLYQCRKDEASGKVQ-FSCTVEIGDIRYIGGAAKTKKEAEIKAARTALLAIQSSA 59
           MNYA+P+YQC+KDE  G+   FSCTV+IG I YIGGAAKTKKEAEIKAARTALLAIQSSA
Sbjct: 113 MNYAMPMYQCKKDETPGRASVFSCTVDIGGILYIGGAAKTKKEAEIKAARTALLAIQSSA 172

Query: 60  SELSGNSAGNTQLTVLPSRKRGPEVANNPEETVNVPKAKKGRFKKKILKMKRPGGRMDRT 119
           S+ S +  G+ QLTVLP RKR  E     +E  N PK KK RFK+K  K K    +M + 
Sbjct: 173 SQASQDQVGHPQLTVLPCRKRATESVAIADENSNPPKPKKARFKRKSSKRKPSRDKMGQI 232

Query: 120 QLQNTGNMENINASQEGSKVSQANTSGIQGV 150
             +N G   NIN   E    + A+ +G  GV
Sbjct: 233 HTENLGIGANINHEVE----THASVNGESGV 259

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255637537|gb|ACU19095.1| unknown [Glycine max]

 Score =  149 bits (375), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 84/151 (55%), Positives = 100/151 (66%), Gaps = 5/151 (3%)

Query: 1   MNYAIPLYQCRKDEASGKVQ-FSCTVEIGDIRYIGGAAKTKKEAEIKAARTALLAIQSSA 59
           MNYA+P+YQC+KDE  G+   FSCTV+IG I YIGGAAKTKKEAEIKAARTALLAIQSSA
Sbjct: 113 MNYAMPMYQCKKDETPGRASVFSCTVDIGGILYIGGAAKTKKEAEIKAARTALLAIQSSA 172

Query: 60  SELSGNSAGNTQLTVLPSRKRGPEVANNPEETVNVPKAKKGRFKKKILKMKRPGGRMDRT 119
           S+ S +  G+ QLTVLP RKR  E     +E  N PK KK RFK+K  K K    +M + 
Sbjct: 173 SQASQDQVGHPQLTVLPCRKRATESVAIADENSNPPKPKKARFKRKSSKRKPSRDKMGQI 232

Query: 120 QLQNTGNMENINASQEGSKVSQANTSGIQGV 150
             +N G   NIN   E    + A+ +G  GV
Sbjct: 233 HTENLGIGANINHEVE----THASVNGESGV 259

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224067130|ref|XP_002302370.1| predicted protein [Populus trichocarpa] gi|222844096|gb|EEE81643.1| predicted protein [Populus trichocarpa]

 Score =  143 bits (360), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 116/287 (40%), Positives = 156/287 (54%), Gaps = 47/287 (16%)

Query: 1   MNYAIPLYQCRKDEASGK-VQFSCTVEIGDIRYIGGAAKTKKEAEIKAARTALLAIQSSA 59
           MNYAIPLY+C+KDE  G+ + F CTVEIG IRYIG + KTKKEAEIKAARTALLAIQSS 
Sbjct: 113 MNYAIPLYECQKDETPGRGLVFKCTVEIGGIRYIGASTKTKKEAEIKAARTALLAIQSSG 172

Query: 60  SELSGNSAGNTQLTVLPSRKRGPEVANNPEETVNVPKAKKGRFKKKILKMKRPGGRMDRT 119
           S+     +G++QLTV+P RKRG E A+  EE  NVPK KK RFKKK+LK K    R++  
Sbjct: 173 SD---KQSGSSQLTVIPCRKRGVE-ASFQEEAENVPKPKKARFKKKMLKKKLSRDRINNA 228

Query: 120 QLQNTGNMENINASQEGSKVSQANTSGIQGVSTEVLAVEGTMDCQEGRSEIEPIEREMPA 179
           Q + T  + NI   Q GS+  Q + S I+G + ++  +E  M  Q+G+S+      E   
Sbjct: 229 QSELTEKL-NIVNGQSGSEADQTDKSAIRGANCKLXTMETQMTFQDGKSDTNLNGGETXD 287

Query: 180 VNDALPHHIGGDSETIHSAATHCSDRSSNEASEMGTSSLAKEVNEVTPGVGTSSVSCHTT 239
           +   L  +  G+ E++  A+ + +  +    +E+   S A          GT  V     
Sbjct: 288 IEGVLTSYDAGNPESVQLASPNFNQSNHGTGAEISAKSNA----------GTGKV----- 332

Query: 240 ALAKEVNEGTPNEGTSTALTEEVNEPSGIMEAASMTNNSTLGQIESS 286
                                     +GI+E ASM NNS L QI +S
Sbjct: 333 --------------------------TGIIEVASMANNSVLAQIGAS 353

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449470070|ref|XP_004152741.1| PREDICTED: double-stranded RNA-binding protein 1-like [Cucumis sativus]

 Score =  127 bits (319), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 67/107 (62%), Positives = 79/107 (73%), Gaps = 4/107 (3%)

Query: 1   MNYAIPLYQCRKDEASGK-VQFSCTVEIGDIRYIGGAAKTKKEAEIKAARTALLAIQSSA 59
           MN+AIPLYQC+KD+  G+   FSCTVEIG IRYIG  AKTKKEAEIKAARTALLAIQS  
Sbjct: 106 MNFAIPLYQCQKDDGPGRGSLFSCTVEIGGIRYIGAVAKTKKEAEIKAARTALLAIQSCP 165

Query: 60  SELSGNSAGNTQLTVLPS--RKRGPEVANNPEETVNVPKAKKGRFKK 104
           + LS  S    QLTV+PS  RK   + +  P+ T + P+AKKGRFK+
Sbjct: 166 NSLSEKSVNQVQLTVIPSCKRKEAADCSVKPKSTAS-PRAKKGRFKR 211

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449511425|ref|XP_004163953.1| PREDICTED: double-stranded RNA-binding protein 1-like [Cucumis sativus]

 Score =  127 bits (319), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 67/107 (62%), Positives = 79/107 (73%), Gaps = 4/107 (3%)

Query: 1   MNYAIPLYQCRKDEASGK-VQFSCTVEIGDIRYIGGAAKTKKEAEIKAARTALLAIQSSA 59
           MN+AIPLYQC+KD+  G+   FSCTVEIG IRYIG  AKTKKEAEIKAARTALLAIQS  
Sbjct: 113 MNFAIPLYQCQKDDGPGRGSLFSCTVEIGGIRYIGAVAKTKKEAEIKAARTALLAIQSCP 172

Query: 60  SELSGNSAGNTQLTVLPS--RKRGPEVANNPEETVNVPKAKKGRFKK 104
           + LS  S    QLTV+PS  RK   + +  P+ T + P+AKKGRFK+
Sbjct: 173 NSLSEKSVNQVQLTVIPSCKRKEAADCSVKPKSTAS-PRAKKGRFKR 218

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357465225|ref|XP_003602894.1| DsRNA-binding protein [Medicago truncatula] gi|355491942|gb|AES73145.1| DsRNA-binding protein [Medicago truncatula]

 Score =  124 bits (311), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 76/155 (49%), Positives = 98/155 (63%), Gaps = 7/155 (4%)

Query: 1   MNYAIPLYQCRKDEAS-GKV-QFSCTVEIGDIRYIGGAAKTKKEAEIKAARTALLAIQSS 58
           MNYA+PLYQ +KD+   G+   +SCTV+IG + YIGG AKTK+EAEIKAARTALLAIQ++
Sbjct: 114 MNYAMPLYQSKKDDTPPGRAPLYSCTVDIGGMLYIGGTAKTKREAEIKAARTALLAIQTN 173

Query: 59  ASELSGNSAGNTQLTVLPSRKRGPEVANNPEETVNVPKAKKGRFKKKILKMKRPGGRMDR 118
           AS+ S N  G+  LTV+PSRKR  E     +E    PK+KK RFK K  K K    +  R
Sbjct: 174 ASQASENQFGH--LTVIPSRKRATESI--ADEASKAPKSKKSRFKGKYSKKKPHRNKKRR 229

Query: 119 TQLQNTGNMENINASQEGSKVSQANTSGIQGVSTE 153
               N G+   I+   E S  S  + SG+Q + +E
Sbjct: 230 INADNAGDEAKIDNGAE-SLASANDESGLQEIKSE 263

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	306
TAIR|locus:2024407	419	HYL1 "HYPONASTIC LEAVES 1" [Ar	0.918	0.670	0.322	4.4e-21
UNIPROTKB|Q0IQN6	424	DRB8 "Double-stranded RNA-bind	0.464	0.334	0.370	1.2e-13

TAIR|locus:2024407 HYL1 "HYPONASTIC LEAVES 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 251 (93.4 bits), Expect = 4.4e-21, P = 4.4e-21
 Identities = 99/307 (32%), Positives = 137/307 (44%)

Query:     1 MNYAIPLYQCRKDEASGKV-QFSCTVEIGDIRYXXXXXXXXXXXXXXXXXXXLLAIQSSA 59
             MNYAIPLYQC+K E  G+V QF+CTVEIG I+Y                   LLAIQS  
Sbjct:   113 MNYAIPLYQCQKVETLGRVTQFTCTVEIGGIKYTGAATRTKKDAEISAGRTALLAIQSDT 172

Query:    60 SELSGNSAGNTQLTVLPSRKRGPEVANNPEETVNVPKAKKGRFKKKILKMKRPGGRMDRT 119
                  N   NTQLTVLP  K+  + A   +ETV   KA+K +FKKK  K KR   +    
Sbjct:   173 KNNLANY--NTQLTVLPCEKKTIQAAIPLKETVKTLKARKAQFKKKAQKGKRTVAKNPED 230

Query:   120 QL---QNTGNMENINASQEGSKVSQANTSGIQGVSTEVLAVEGTMDCQEGRSEIEPIERE 176
              +   Q T + +N  + +  +  +   +S + G+     A  G+++ +  + E  P   E
Sbjct:   231 IIIPPQPTDHCQNDQSEKIETTPNLEPSSCMNGLKE---AAFGSVETE--KIETTP-NLE 284

Query:   177 MPAVNDALPHHIGGDSETIHSAATHCSDRSS--NEASEMGTSSLAKEVNEVTPGVGTSSV 234
              P+  + L     G  ET     T   +  S  N   E    S+  E  E TP +  SS 
Sbjct:   285 PPSCMNGLKEAAFGSVETEKIETTPNLEPPSCMNGLKEAAFGSVETEKIETTPNLEPSS- 343

Query:   235 SCHTTALAKEVNEGTPNEGTSTALTEEVNEPS---GIMEAA--SMTNNS--TLGQIESSC 287
              C    L KE   G+  E      T  +  PS   G+ EAA  S+      T   +ESS 
Sbjct:   344 -C-MNGL-KEAAFGSV-ETEKIETTPNLEPPSCMNGLKEAAFGSVETEKIETTPNLESSS 399

Query:   288 VIPGINQ 294
              + G+ +
Sbjct:   400 CMSGLKE 406

GO:0003723 "RNA binding" evidence=IEA

GO:0003725 "double-stranded RNA binding" evidence=IEA;IDA

GO:0005622 "intracellular" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0005634 "nucleus" evidence=IDA

GO:0009733 "response to auxin stimulus" evidence=IMP

GO:0009735 "response to cytokinin stimulus" evidence=IMP

GO:0009737 "response to abscisic acid stimulus" evidence=IMP

GO:0035196 "production of miRNAs involved in gene silencing by miRNA" evidence=RCA;IMP

GO:0005515 "protein binding" evidence=IPI

GO:0035279 "mRNA cleavage involved in gene silencing by miRNA" evidence=IMP

GO:0031054 "pre-miRNA processing" evidence=IMP

GO:0010267 "production of ta-siRNAs involved in RNA interference" evidence=RCA;IMP

GO:0015030 "Cajal body" evidence=IDA

GO:0035198 "miRNA binding" evidence=IDA

GO:0010445 "nuclear dicing body" evidence=IDA

GO:0051607 "defense response to virus" evidence=RCA

GO:0010305 "leaf vascular tissue pattern formation" evidence=IMP

GO:0010589 "leaf proximal/distal pattern formation" evidence=IMP

UNIPROTKB|Q0IQN6 DRB8 "Double-stranded RNA-binding protein 8" [Oryza sativa Japonica Group (taxid:39947)]

 Score = 196 (74.1 bits), Expect = 1.2e-13, P = 1.2e-13
 Identities = 56/151 (37%), Positives = 74/151 (49%)

Query:     1 MNYAIPLYQCRKDEASGKVQFSCTVEIGDIRYXXXXXXXXXXXXXXXXXXXLLAIQSSAS 60
             MNYAIP Y C K  ASG   F CTVEIG I+Y                   LLAIQ   S
Sbjct:   130 MNYAIPSYICTKS-ASGLAPFICTVEIGGIQYIGAAARTKKDAEIKAARTALLAIQGQ-S 187

Query:    61 ELSGNSAGNTQLTVLPSRKRGPEVANNPEETVNVPKAKKGRFKKKILK---MKRPGGRMD 117
             E S N A  T+  V+P ++ G EV   P ET    K KKG FKKK  K   MK+ G  +D
Sbjct:   188 EGSANGA--TKYIVVPGKRVGKEVEKRPIETPKPLKVKKGGFKKKWNKRKFMKKDGQAVD 245

Query:   118 --RTQLQNTGNMENINASQEGSKVSQANTSG 146
               + + +  G+  + +   + + ++Q  + G
Sbjct:   246 VEKDEARVAGDAHDSDVLMQPTVITQEASCG 276


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.305   0.122   0.332    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      306       287   0.00087  115 3  11 23  0.38    35
                                                     33  0.43    37


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  2
  No. of states in DFA:  572 (61 KB)
  Total size of DFA:  170 KB (2100 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  25.66u 0.12s 25.78t   Elapsed:  00:00:01
  Total cpu time:  25.66u 0.12s 25.78t   Elapsed:  00:00:01
  Start:  Fri May 10 15:25:34 2013   End:  Fri May 10 15:25:35 2013

GO:0003725 "double-stranded RNA binding" evidence=IDA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	GSVIVG00015092001	SubName- Full=Chromosome chr18 scaffold_1, whole genome shotgun sequence; (394 aa)
		(Vitis vinifera)
Predicted Functional Partners:
	GSVIVG00026189001	SubName- Full=Chromosome chr15 scaffold_37, whole genome shotgun sequence; (1961 aa)					•		•		0.528

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	306
cd00048	68	cd00048, DSRM, Double-stranded RNA binding motif	7e-09
pfam00035	66	pfam00035, dsrm, Double-stranded RNA binding motif	3e-08
smart00358	67	smart00358, DSRM, Double-stranded RNA binding moti	8e-08
PRK00102	229	PRK00102, rnc, ribonuclease III; Reviewed	0.001
TIGR02191	220	TIGR02191, RNaseIII, ribonuclease III, bacterial	0.003

>gnl|CDD|238007 cd00048, DSRM, Double-stranded RNA binding motif

 Score = 51.1 bits (123), Expect = 7e-09
 Identities = 15/56 (26%), Positives = 25/56 (44%), Gaps = 1/56 (1%)

Query: 1  MNYAIPLYQCRKDE-ASGKVQFSCTVEIGDIRYIGGAAKTKKEAEIKAARTALLAI 55
              +P Y+  ++E      +F+  V +G      G   +KKEA+  AA  AL  +
Sbjct: 13 RGKPLPEYELVEEEGPDHAPRFTVEVTVGGKITGEGEGSSKKEAKQNAAEAALRKL 68

Binding is not sequence specific but is highly specific for double stranded RNA. Found in a variety of proteins including dsRNA dependent protein kinase PKR, RNA helicases, Drosophila staufen protein, E. coli RNase III, RNases H1, and dsRNA dependent adenosine deaminases. Length = 68

>gnl|CDD|215670 pfam00035, dsrm, Double-stranded RNA binding motif

 Score = 49.6 bits (119), Expect = 3e-08
 Identities = 14/52 (26%), Positives = 21/52 (40%)

Query: 1  MNYAIPLYQCRKDEASGKVQFSCTVEIGDIRYIGGAAKTKKEAEIKAARTAL 52
               P     ++       F+ TV +   +Y  G   +KKEA+  AA  AL
Sbjct: 12 KGPKPPYEYVEEEGPPHSPTFTVTVTVNGKKYGTGTGSSKKEAKQLAAEKAL 63

Sequences gathered for seed by HMM_iterative_training Putative motif shared by proteins that bind to dsRNA. At least some DSRM proteins seem to bind to specific RNA targets. Exemplified by Staufen, which is involved in localisation of at least five different mRNAs in the early Drosophila embryo. Also by interferon-induced protein kinase in humans, which is part of the cellular response to dsRNA. Length = 66

>gnl|CDD|214634 smart00358, DSRM, Double-stranded RNA binding motif

 Score = 48.4 bits (116), Expect = 8e-08
 Identities = 18/53 (33%), Positives = 27/53 (50%), Gaps = 1/53 (1%)

Query: 1  MNYAIPLYQCRKDE-ASGKVQFSCTVEIGDIRYIGGAAKTKKEAEIKAARTAL 52
               P Y+  K+E      +F+ TV++G  R   G   +KKEA+ +AA  AL
Sbjct: 11 KRKLPPEYELVKEEGPDHAPRFTVTVKVGGKRTGEGEGSSKKEAKQRAAEAAL 63

Length = 67

>gnl|CDD|234633 PRK00102, rnc, ribonuclease III; Reviewed

 Score = 39.3 bits (93), Expect = 0.001
 Identities = 12/38 (31%), Positives = 19/38 (50%)

Query: 20  QFSCTVEIGDIRYIGGAAKTKKEAEIKAARTALLAIQS 57
           +F+  V +       G   +KKEAE  AA+ AL  ++ 
Sbjct: 191 EFTVEVTVNGKELGEGTGSSKKEAEQAAAKQALKKLKE 228

Length = 229

>gnl|CDD|233772 TIGR02191, RNaseIII, ribonuclease III, bacterial

 Score = 37.9 bits (89), Expect = 0.003
 Identities = 18/51 (35%), Positives = 26/51 (50%), Gaps = 1/51 (1%)

Query: 6   PLYQCRKDE-ASGKVQFSCTVEIGDIRYIGGAAKTKKEAEIKAARTALLAI 55
           P Y+  K+E      +F+  V +    Y  G  K+KKEAE  AA+ AL  +
Sbjct: 170 PEYRLIKEEGPDHDKEFTVEVSVNGEPYGEGKGKSKKEAEQNAAKAALEKL 220

This family consists of bacterial examples of ribonuclease III. This enzyme cleaves double-stranded rRNA. It is involved in processing ribosomal RNA precursors. It is found even in minimal genones such as Mycoplasma genitalium and Buchnera aphidicola, and in some cases has been shown to be an essential gene. These bacterial proteins contain a double-stranded RNA binding motif (pfam00035) and a ribonuclease III domain (pfam00636). Eukaryotic homologs tend to be much longer proteins with additional domains, localized to the nucleus, and not included in this family [Transcription, RNA processing]. Length = 220

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	306
cd00048	68	DSRM Double-stranded RNA binding motif. Binding is	99.37
smart00358	67	DSRM Double-stranded RNA binding motif.	99.36
PHA02701	183	ORF020 dsRNA-binding PKR inhibitor; Provisional	99.32
PHA03103	183	double-strand RNA-binding protein; Provisional	99.3
PRK12371	235	ribonuclease III; Reviewed	99.28
COG0571	235	Rnc dsRNA-specific ribonuclease [Transcription]	99.27
PF00035	67	dsrm: Double-stranded RNA binding motif; InterPro:	99.24
PRK14718	467	ribonuclease III; Provisional	99.05
PRK12372	413	ribonuclease III; Reviewed	99.02
PF14709	80	DND1_DSRM: double strand RNA binding domain from D	98.41
KOG3732	339	consensus Staufen and related double-stranded-RNA-	98.21
KOG1817	533	consensus Ribonuclease [RNA processing and modific	98.11
KOG3732	339	consensus Staufen and related double-stranded-RNA-	97.75
KOG2777	542	consensus tRNA-specific adenosine deaminase 1 [RNA	97.55
KOG3769	333	consensus Ribonuclease III domain proteins [Transl	96.36
KOG4334	650	consensus Uncharacterized conserved protein, conta	96.07
PF03368	90	Dicer_dimer: Dicer dimerisation domain; InterPro:	86.65
KOG2777	542	consensus tRNA-specific adenosine deaminase 1 [RNA	81.54

>cd00048 DSRM Double-stranded RNA binding motif

Probab=99.37  E-value=2e-12  Score=89.98  Aligned_cols=54  Identities=26%  Similarity=0.370  Sum_probs=49.7

Q ss_pred             CCCCceEEe-eccCCCCCceEEEEEEECCEEeeCCCCCCHHHHHHHHHHHHHHHH
Q 021849            2 NYAIPLYQC-RKDEASGKVQFSCTVEIGDIRYIGGAAKTKKEAEIKAARTALLAI   55 (306)
Q Consensus         2 nL~lP~Y~i-~ksGPdHdk~FtAeV~IgGk~yG~G~GrSKKEAEQaAAK~AL~aL   55 (306)
                      ++..|.|.+ ...||+|.+.|+|.|.|+|+.++.|.|+|||+|++.||+.||..|
T Consensus        14 ~~~~~~y~~~~~~g~~~~~~f~~~v~i~~~~~~~g~g~sKk~Ak~~AA~~al~~L   68 (68)
T cd00048          14 GKPLPEYELVEEEGPDHAPRFTVEVTVGGKITGEGEGSSKKEAKQNAAEAALRKL   68 (68)
T ss_pred             CCCCCeEEEeeeeCCCCCCeEEEEEEECCEEEEEeecCCHHHHHHHHHHHHHHhC
Confidence            467899986 668999999999999999999999999999999999999999865

Binding is not sequence specific but is highly specific for double stranded RNA. Found in a variety of proteins including dsRNA dependent protein kinase PKR, RNA helicases, Drosophila staufen protein, E. coli RNase III, RNases H1, and dsRNA dependent adenosine deaminases.

>smart00358 DSRM Double-stranded RNA binding motif

Probab=99.36  E-value=3e-12  Score=89.73  Aligned_cols=51  Identities=31%  Similarity=0.411  Sum_probs=47.9

Q ss_pred             CceEEeec-cCCCCCceEEEEEEECCEEeeCCCCCCHHHHHHHHHHHHHHHH
Q 021849            5 IPLYQCRK-DEASGKVQFSCTVEIGDIRYIGGAAKTKKEAEIKAARTALLAI   55 (306)
Q Consensus         5 lP~Y~i~k-sGPdHdk~FtAeV~IgGk~yG~G~GrSKKEAEQaAAK~AL~aL   55 (306)
                      .|.|.+.. .||+|.+.|+|+|.|+|+.++.|.|+|||+|++.||+.||..|
T Consensus        15 ~~~y~~~~~~g~~~~~~f~~~v~i~~~~~~~g~g~sKk~Ak~~AA~~al~~L   66 (67)
T smart00358       15 PPEYELVKEEGPDHAPRFTVTVKVGGEYTGEGEGSSKKEAKQRAAEAALRSL   66 (67)
T ss_pred             CCEEEEEeeeCCCCCCcEEEEEEECCEEEEEeccCCHHHHHHHHHHHHHHhc
Confidence            79998655 7999999999999999999999999999999999999999876

>PHA02701 ORF020 dsRNA-binding PKR inhibitor; Provisional

Probab=99.32  E-value=2.9e-12  Score=114.21  Aligned_cols=52  Identities=19%  Similarity=0.192  Sum_probs=48.1

Q ss_pred             eEE-eeccCCCCCceEEEEEEECCEEeeCCCCCCHHHHHHHHHHHHHHHHhhh
Q 021849            7 LYQ-CRKDEASGKVQFSCTVEIGDIRYIGGAAKTKKEAEIKAARTALLAIQSS   58 (306)
Q Consensus         7 ~Y~-i~ksGPdHdk~FtAeV~IgGk~yG~G~GrSKKEAEQaAAK~AL~aL~~~   58 (306)
                      .|. +..+||+|.++|+++|+|+|+.|+.|.|+|||+|||+||+.||..|..+
T Consensus       126 ~Y~li~~~GpdH~~~Ftv~V~V~g~~~g~G~G~SKKeAEQ~AAk~AL~~L~~~  178 (183)
T PHA02701        126 EFCETRSGGHDHCPLFTCTIVVSGKVVATASGCSKKLARHAACADALTILINN  178 (183)
T ss_pred             eEEEEEeECCCCCceEEEEEEECCEEEEEEEeCCHHHHHHHHHHHHHHHHHhh
Confidence            896 5567999999999999999999999999999999999999999998644

>PHA03103 double-strand RNA-binding protein; Provisional

Probab=99.30  E-value=4.7e-12  Score=112.62  Aligned_cols=52  Identities=27%  Similarity=0.275  Sum_probs=47.6

Q ss_pred             eE-EeeccCCCCCceEEEEEEECCEEeeCCCCCCHHHHHHHHHHHHHHHHhhh
Q 021849            7 LY-QCRKDEASGKVQFSCTVEIGDIRYIGGAAKTKKEAEIKAARTALLAIQSS   58 (306)
Q Consensus         7 ~Y-~i~ksGPdHdk~FtAeV~IgGk~yG~G~GrSKKEAEQaAAK~AL~aL~~~   58 (306)
                      .| .+...||+|.++|+++|+|+|+.|+.|.|+|||+|||+||+.||..|...
T Consensus       126 ~y~~i~~~Gp~H~p~F~v~V~I~g~~~g~G~G~SKKeAEQ~AAk~AL~~L~~~  178 (183)
T PHA03103        126 WSINITSSGPSHSPTFTASVIISGIKFKPAIGSTKKEAKNNAAKLAMDKILNY  178 (183)
T ss_pred             eEEEEEeeCCCCCceEEEEEEECCEEEEEeeeCCHHHHHHHHHHHHHHHHHhc
Confidence            46 56678999999999999999999999999999999999999999998543

>PRK12371 ribonuclease III; Reviewed

Probab=99.28  E-value=7e-12  Score=112.79  Aligned_cols=55  Identities=22%  Similarity=0.287  Sum_probs=50.4

Q ss_pred             CCCceEEe-eccCCCCCceEEEEEEECCEEeeCCCCCCHHHHHHHHHHHHHHHHhh
Q 021849            3 YAIPLYQC-RKDEASGKVQFSCTVEIGDIRYIGGAAKTKKEAEIKAARTALLAIQS   57 (306)
Q Consensus         3 L~lP~Y~i-~ksGPdHdk~FtAeV~IgGk~yG~G~GrSKKEAEQaAAK~AL~aL~~   57 (306)
                      ...|.|.+ ..+||+|.++|+|+|+|+|+.+|.|.|+|||+|||.||+.||..|..
T Consensus       176 ~~~p~Y~~~~~~Gp~h~~~F~v~v~v~~~~~~~g~G~sKK~Ae~~AA~~al~~~~~  231 (235)
T PRK12371        176 GVTPVYRVDSRSGPDHDPRFTVEVEVKGFAPETGEGRSKRAAEQVAAEKMLEREGV  231 (235)
T ss_pred             CCCCeEEEEEeecCCCCCeEEEEEEECCEEEEEeeeCCHHHHHHHHHHHHHHHhhh
Confidence            46799975 46799999999999999999999999999999999999999999854

>COG0571 Rnc dsRNA-specific ribonuclease [Transcription]

Probab=99.27  E-value=8.8e-12  Score=113.56  Aligned_cols=57  Identities=26%  Similarity=0.390  Sum_probs=51.7

Q ss_pred             CCCCceEEee-ccCCCCCceEEEEEEECCEEeeCCCCCCHHHHHHHHHHHHHHHHhhh
Q 021849            2 NYAIPLYQCR-KDEASGKVQFSCTVEIGDIRYIGGAAKTKKEAEIKAARTALLAIQSS   58 (306)
Q Consensus         2 nL~lP~Y~i~-ksGPdHdk~FtAeV~IgGk~yG~G~GrSKKEAEQaAAK~AL~aL~~~   58 (306)
                      .+.+|.|++. .+||+|++.|+++|+|+|..+|.|.|+|||+|||.||+.||..|...
T Consensus       175 ~~~~p~Y~~v~~~g~~h~~~F~v~v~v~~~~~g~G~G~skk~AEq~AA~~al~~l~~~  232 (235)
T COG0571         175 GLVLPEYRLVKEEGPAHDKEFTVEVAVGGKELGTGKGRSKKEAEQAAAEQALKKLGVK  232 (235)
T ss_pred             CCCCCeEEEeeccCCCCCceEEEEEEECCeeEEEecccCHHHHHHHHHHHHHHHhccc
Confidence            3678999754 56999999999999999999999999999999999999999998643

>PF00035 dsrm: Double-stranded RNA binding motif; InterPro: IPR001159 The DsRBD domain is found in a variety of RNA-binding proteins with different structures and exhibiting a diversity of functions []

Probab=99.24  E-value=2.1e-11  Score=86.21  Aligned_cols=52  Identities=35%  Similarity=0.493  Sum_probs=44.9

Q ss_pred             CCceEEeeccCCCCC-ceEEEEEEECCEEeeCCCCCCHHHHHHHHHHHHHHHH
Q 021849            4 AIPLYQCRKDEASGK-VQFSCTVEIGDIRYIGGAAKTKKEAEIKAARTALLAI   55 (306)
Q Consensus         4 ~lP~Y~i~ksGPdHd-k~FtAeV~IgGk~yG~G~GrSKKEAEQaAAK~AL~aL   55 (306)
                      .+|.|.+...+|+|. +.|.|+|+|+|..|+.|.|.|||+|++.||+.||..|
T Consensus        15 ~~~~~~~~~~~~~~~~~~f~~~~~i~~~~~~~g~g~sKk~Ak~~AA~~al~~L   67 (67)
T PF00035_consen   15 PPPYYYIEEEGPSHHRPRFICTVYIDGKEYGEGEGSSKKEAKQQAAKKALQKL   67 (67)
T ss_dssp             SEEEEEEEEESSSSSSEEEEEEEEETTEEEEEEEESSHHHHHHHHHHHHHHHH
T ss_pred             CCCEEEEEEeCCCCCCceEEEEEEECCEEEeEeccCCHHHHHHHHHHHHHHhC
Confidence            344445666777776 8999999999999999999999999999999999876

It is involved in localisation of at least five different mRNAs in the early Drosophila embryo and by interferon-induced protein kinase in humans, which is part of the cellular response to dsRNA.; GO: 0003725 double-stranded RNA binding, 0005622 intracellular; PDB: 1EKZ_A 1STU_A 1QU6_A 2L2M_A 3ADJ_A 1WHN_A 3LLH_B 2B7V_A 2L3J_A 1UHZ_A ....

>PRK14718 ribonuclease III; Provisional

Probab=99.05  E-value=2.9e-10  Score=112.77  Aligned_cols=55  Identities=24%  Similarity=0.395  Sum_probs=49.9

Q ss_pred             CCCCceEEe-eccCCCCCceEEEEEEECCE-EeeCCCCCCHHHHHHHHHHHHHHHHh
Q 021849            2 NYAIPLYQC-RKDEASGKVQFSCTVEIGDI-RYIGGAAKTKKEAEIKAARTALLAIQ   56 (306)
Q Consensus         2 nL~lP~Y~i-~ksGPdHdk~FtAeV~IgGk-~yG~G~GrSKKEAEQaAAK~AL~aL~   56 (306)
                      .+.+|+|.+ ..+||+|++.|+++|+|+|. .+|.|+|+|||+|||.||+.||..|.
T Consensus       165 ~~~~PeY~li~esGPdH~k~F~V~V~v~g~~~~G~G~G~SKKeAEQ~AAk~AL~kL~  221 (467)
T PRK14718        165 KIALPTYTVVATHGAAHNQQFEVECTVPKLDIKVSGSGASRRAAEQAAAKKALDEVT  221 (467)
T ss_pred             CCCCCeeEEeeeecCCCCCeEEEEEEECCeeeEEEEEcCCHHHHHHHHHHHHHHHhc
Confidence            357899974 56799999999999999995 56999999999999999999999998

>PRK12372 ribonuclease III; Reviewed

Probab=99.02  E-value=5.9e-10  Score=109.30  Aligned_cols=57  Identities=23%  Similarity=0.352  Sum_probs=50.7

Q ss_pred             CCCCceEE-eeccCCCCCceEEEEEEECC-EEeeCCCCCCHHHHHHHHHHHHHHHHhhh
Q 021849            2 NYAIPLYQ-CRKDEASGKVQFSCTVEIGD-IRYIGGAAKTKKEAEIKAARTALLAIQSS   58 (306)
Q Consensus         2 nL~lP~Y~-i~ksGPdHdk~FtAeV~IgG-k~yG~G~GrSKKEAEQaAAK~AL~aL~~~   58 (306)
                      .+.+|+|. +...||+|++.|+++|+|+| ..++.|.|+|||+|||.||+.||..|...
T Consensus       165 ~~~~P~Y~lv~e~Gp~h~~~F~V~V~v~g~~~~g~G~G~SKKeAEQ~AAr~AL~kL~~~  223 (413)
T PRK12372        165 KIALPTYTVVATHGAAHNQQFEVECTVPKLDVKVSGSGASRRAAEQAAAKKALDEVMAA  223 (413)
T ss_pred             CCCCCeeEEeeeecCCCCceEEEEEEECCeEEEEEEEeCCHHHHHHHHHHHHHHHHhcc
Confidence            35789997 45679999999999999999 56789999999999999999999999843

>PF14709 DND1_DSRM: double strand RNA binding domain from DEAD END PROTEIN 1

Probab=98.41  E-value=7.3e-07  Score=69.25  Aligned_cols=55  Identities=29%  Similarity=0.368  Sum_probs=47.0

Q ss_pred             CCCCCceEEee-ccCCCCCceEEEEEEECCEEee---------CCC-CCCHHHHHHHHHHHHHHHH
Q 021849            1 MNYAIPLYQCR-KDEASGKVQFSCTVEIGDIRYI---------GGA-AKTKKEAEIKAARTALLAI   55 (306)
Q Consensus         1 MnL~lP~Y~i~-ksGPdHdk~FtAeV~IgGk~yG---------~G~-GrSKKEAEQaAAK~AL~aL   55 (306)
                      +.++.|.|.+. ..||+|.+.|+..|.|.+..+-         .+. -.+||+|...||+.||..|
T Consensus        14 ~~W~~P~y~l~~~~Gp~~~~~F~ykV~i~~~~~~~~~~~~~~~p~~~~~~~k~Ak~~AA~~~L~~L   79 (80)
T PF14709_consen   14 NKWGPPVYELVSESGPDHRKLFLYKVVIPGLEYPFEGSIECFGPTKPSSTKKEAKESAAQQALQAL   79 (80)
T ss_pred             cCCCCCeEEEEeccCCCccEEEEEEEEEcCCCCCCcceEEEccCCCcCccHHHHHHHHHHHHHHhc
Confidence            35789999865 5799999999999999998773         334 4899999999999999887

>KOG3732 consensus Staufen and related double-stranded-RNA-binding proteins [Intracellular trafficking, secretion, and vesicular transport; Transcription]

Probab=98.21  E-value=2.3e-06  Score=82.75  Aligned_cols=55  Identities=24%  Similarity=0.329  Sum_probs=49.1

Q ss_pred             CCceEEeec-cCCCCCceEEEEEEECCEEeeCCCCCCHHHHHHHHHHHHHHHHhhhc
Q 021849            4 AIPLYQCRK-DEASGKVQFSCTVEIGDIRYIGGAAKTKKEAEIKAARTALLAIQSSA   59 (306)
Q Consensus         4 ~lP~Y~i~k-sGPdHdk~FtAeV~IgGk~yG~G~GrSKKEAEQaAAK~AL~aL~~~s   59 (306)
                      ..|.|++.+ +||.|++.|++.|.|+ ..-+.|.|+|||.|.+.||.++|..|+...
T Consensus        53 ~~v~fevl~eeGp~H~~~fv~rvtvg-~~~a~GeG~sKK~AKh~AA~~~L~~lk~l~  108 (339)
T KOG3732|consen   53 LTPVYEVLREEGPPHMPNFVFRVTVG-EITATGEGKSKKLAKHRAAEALLKELKKLP  108 (339)
T ss_pred             CCcceeeeeccCCccCCCeEEEEEEe-eeEEecCCCchhHHHHHHHHHHHHHHhcCC
Confidence            457898665 8999999999999998 778999999999999999999999997554

>KOG1817 consensus Ribonuclease [RNA processing and modification]

Probab=98.11  E-value=5.9e-06  Score=82.97  Aligned_cols=55  Identities=25%  Similarity=0.372  Sum_probs=50.1

Q ss_pred             CCceEE-eeccCCCCCceEEEEEEECCEEeeCCCCCCHHHHHHHHHHHHHHHHhhh
Q 021849            4 AIPLYQ-CRKDEASGKVQFSCTVEIGDIRYIGGAAKTKKEAEIKAARTALLAIQSS   58 (306)
Q Consensus         4 ~lP~Y~-i~ksGPdHdk~FtAeV~IgGk~yG~G~GrSKKEAEQaAAK~AL~aL~~~   58 (306)
                      .+|.|. +...||.+++.|++.|+++|+.+|.|+|++.|.||..||.+||+.+...
T Consensus       449 dip~y~V~~~~gpa~~r~y~Vavyf~gkrlat~~G~nik~Ae~rAA~~ALe~~~~d  504 (533)
T KOG1817|consen  449 DIPLYKVLGAKGPANDRNYKVAVYFKGKRLATGVGSNIKQAEMRAAMQALENLKMD  504 (533)
T ss_pred             CCceEEEecccCCCCCCceEEEEEECCEEEeeccCchHhHHHHHHHHHHHHHHHhh
Confidence            478886 4558999999999999999999999999999999999999999998754

>KOG3732 consensus Staufen and related double-stranded-RNA-binding proteins [Intracellular trafficking, secretion, and vesicular transport; Transcription]

Probab=97.75  E-value=5.7e-05  Score=73.33  Aligned_cols=57  Identities=18%  Similarity=0.286  Sum_probs=49.5

Q ss_pred             CCCceEE-eeccCCCCCceEEEEEEECCEEeeCCCCCCHHHHHHHHHHHHHHHHhhhcc
Q 021849            3 YAIPLYQ-CRKDEASGKVQFSCTVEIGDIRYIGGAAKTKKEAEIKAARTALLAIQSSAS   60 (306)
Q Consensus         3 L~lP~Y~-i~ksGPdHdk~FtAeV~IgGk~yG~G~GrSKKEAEQaAAK~AL~aL~~~s~   60 (306)
                      +.+|+|+ +.+.|++|.+.|+++|.|.+. ...|.|.|||.|.++||..-|+.|.....
T Consensus       157 ~k~P~yelv~E~G~~~~rEFv~q~sv~~~-~~~GkG~sKKiAKRnAAeamLe~l~~~~~  214 (339)
T KOG3732|consen  157 WKLPEYELVQESGVPHRREFVIQCSVENF-TEEGKGPSKKIAKRNAAEAMLESLGFVKP  214 (339)
T ss_pred             CCCCceEEEeccCCCccceEEEEEEecce-eeecCCchHHHHHHHHHHHHHHHhccCCC
Confidence            5789997 556799999999999999875 67899999999999999999999864433

>KOG2777 consensus tRNA-specific adenosine deaminase 1 [RNA processing and modification]

Probab=97.55  E-value=0.00015  Score=74.07  Aligned_cols=55  Identities=22%  Similarity=0.295  Sum_probs=48.9

Q ss_pred             CceEE-eeccCCCCCceEEEEEEECCEEeeCCCCCCHHHHHHHHHHHHHHHHhhhcc
Q 021849            5 IPLYQ-CRKDEASGKVQFSCTVEIGDIRYIGGAAKTKKEAEIKAARTALLAIQSSAS   60 (306)
Q Consensus         5 lP~Y~-i~ksGPdHdk~FtAeV~IgGk~yG~G~GrSKKEAEQaAAK~AL~aL~~~s~   60 (306)
                      -|.|. +...||.|.+.|.+.|.|||+.|-.| |+|||+|.+.||..||..|.....
T Consensus       102 ~~~~~~~~~~~~~~~~~F~~~~~vdg~~~~~~-~~sKk~ak~~aa~~al~~l~~~~~  157 (542)
T KOG2777|consen  102 GLFFDFVNESGPQHAPKFVMSVVVDGRWFEGG-GRSKKEAKQEAAMAALQVLFKIDE  157 (542)
T ss_pred             ccceeeeccCCCCCCceEEEEEEECCEEccCC-CcchHHHHHHHHHHHHHHHHhccC
Confidence            36776 55689999999999999999999999 999999999999999999875544

>KOG3769 consensus Ribonuclease III domain proteins [Translation, ribosomal structure and biogenesis]

Probab=96.36  E-value=0.0031  Score=61.32  Aligned_cols=59  Identities=20%  Similarity=0.171  Sum_probs=50.1

Q ss_pred             CCCCceEEeec-cC-CCCCceEEEEEEECCEEeeCCCCCCHHHHHHHHHHHHHHHHhhhcc
Q 021849            2 NYAIPLYQCRK-DE-ASGKVQFSCTVEIGDIRYIGGAAKTKKEAEIKAARTALLAIQSSAS   60 (306)
Q Consensus         2 nL~lP~Y~i~k-sG-PdHdk~FtAeV~IgGk~yG~G~GrSKKEAEQaAAK~AL~aL~~~s~   60 (306)
                      ++..|+|++.. +| -.-.+.|.|-++-|-+.+|.|.|.|-|.||+.||++||.+|=.-.+
T Consensus       246 ~l~epe~Rll~esGr~S~~PvyvVgiYs~kkllGqG~Gesl~~A~e~AA~dAL~k~y~~tp  306 (333)
T KOG3769|consen  246 GLKEPESRLLAESGRNSAEPVYVVGIYSGKKLLGQGQGESLKLAEEQAARDALIKLYDHTP  306 (333)
T ss_pred             CCCCchhHHHHHhccCccCceEEEEeecCchhhccCcchHHHHHHHHHHHHHHHHHHcCCh
Confidence            46789997554 45 4556799999999999999999999999999999999999876554

>KOG4334 consensus Uncharacterized conserved protein, contains double-stranded RNA-binding motif and WW domain [General function prediction only]

Probab=96.07  E-value=0.0051  Score=63.33  Aligned_cols=55  Identities=24%  Similarity=0.382  Sum_probs=45.3

Q ss_pred             CCCceEEeeccCCCCCceEEEEEEECCEEeeCCCCCCHHHHHHHHHHHHHHHHhhh
Q 021849            3 YAIPLYQCRKDEASGKVQFSCTVEIGDIRYIGGAAKTKKEAEIKAARTALLAIQSS   58 (306)
Q Consensus         3 L~lP~Y~i~ksGPdHdk~FtAeV~IgGk~yG~G~GrSKKEAEQaAAK~AL~aL~~~   58 (306)
                      ..+|+|.+..-. ...-.|.+.|.+++-.||.|.|.|||.|...|||++|+.|-..
T Consensus       390 k~~pvyef~e~~-n~stpysa~v~~d~~~yGsG~g~sKK~Ak~~AAR~tLeiLIPd  444 (650)
T KOG4334|consen  390 KSLPVYEFAEND-NNSTPYSAGVLPDLFPYGSGVGASKKTAKLVAARDTLEILIPD  444 (650)
T ss_pred             hhcceeehhhcc-CCCCcccccccccccccccccccchHHHHHHHHHHHHHHhcch
Confidence            367999655421 2234899999999999999999999999999999999998644

>PF03368 Dicer_dimer: Dicer dimerisation domain; InterPro: IPR005034 This domain is found in members of the Dicer protein family of dsRNA nucleases

Probab=86.65  E-value=1.7  Score=34.30  Aligned_cols=52  Identities=23%  Similarity=0.157  Sum_probs=34.3

Q ss_pred             CCceEEeeccCCCCCceEEEEEEECCE-----EeeCCCCCCHHHHHHHHHHHHHHHHhhhcc
Q 021849            4 AIPLYQCRKDEASGKVQFSCTVEIGDI-----RYIGGAAKTKKEAEIKAARTALLAIQSSAS   60 (306)
Q Consensus         4 ~lP~Y~i~ksGPdHdk~FtAeV~IgGk-----~yG~G~GrSKKEAEQaAAK~AL~aL~~~s~   60 (306)
                      ..|.|.+...+.    .|.|+|.+-..     ..|. .-+|||.|.+.||=.|+..|.....
T Consensus        20 ~~P~~~~~~~~~----~~~c~v~LP~~~pi~~i~g~-~~~sk~~AK~sAAf~Ac~~L~~~g~   76 (90)
T PF03368_consen   20 LKPEFEIEKIGS----GFICTVILPINSPIRSIEGP-PMRSKKLAKRSAAFEACKKLHEAGE   76 (90)
T ss_dssp             SS-EEEEEE--G-----EEEEEE--TT-SS--EEEE---SSHHHHHHHHHHHHHHHHHHH-S
T ss_pred             CCceEEEEEcCC----cEEEEEECCCCCCCCeEEcc-ccccHHHHHHHHHHHHHHHHHHcCC
Confidence            358998776543    89999988652     3444 6799999999999999999986643

This entry represents a dsRNA-binding domain. RNA interference (RNAi) is an ancient gene-silencing process that plays a fundamental role in diverse eukaryotic functions including viral defence, chromatin remodelling, genome rearrangement, developmental timing, brain morphogenesis, and stem cell maintenance. All RNAi pathways require the multidomain ribonuclease Dicer, which initiates RNAi by cleaving double-stranded RNA (dsRNA) substrates into small fragments ~25 nuleotides in length. A typical eukaryotic Dicer consists of a helicase domain (PDOC51192 from PROSITEDOC), a domain of unknown function, and a PAZ domain (PDOC50821 from PROSITEDOC) at the amino (N)-terminus as well as two ribonuclease III domains (PDOC00448 from PROSITEDOC) and a dsRNA-binding domain (dsRBD) (PDOC50137 from PROSITEDOC) at the carboxy (C)-terminus. The domain of unknown function of ~100 amino acids is predicted to adopt the canonical alpha-beta-beta-beta-alpha-fold found in all dsRBDs [, , , ].; GO: 0016891 endoribonuclease activity, producing 5'-phosphomonoesters; PDB: 2KOU_A.

>KOG2777 consensus tRNA-specific adenosine deaminase 1 [RNA processing and modification]

Probab=81.54  E-value=1  Score=46.81  Aligned_cols=49  Identities=22%  Similarity=0.259  Sum_probs=42.4

Q ss_pred             ceEE-eeccCCCCCceEEEEEEECCEEeeCCCCCCHHHHHHHHHHHHHHHHhhhcc
Q 021849            6 PLYQ-CRKDEASGKVQFSCTVEIGDIRYIGGAAKTKKEAEIKAARTALLAIQSSAS   60 (306)
Q Consensus         6 P~Y~-i~ksGPdHdk~FtAeV~IgGk~yG~G~GrSKKEAEQaAAK~AL~aL~~~s~   60 (306)
                      +.|. +...||.|.++|.++|.|+|..+-      ||.|-+.||..|+..+..-.+
T Consensus        10 ~~~~~~~q~~p~~~p~~~~~~~v~~~~~~------~k~~~~~~a~~~~~~~~~~~~   59 (542)
T KOG2777|consen   10 LQYNLVSQTGPVHAPLFPFSVEVNGQEFP------KKKAKQRAAEKALRVFLQFPE   59 (542)
T ss_pred             cccccccccCCCCCCcccceEEecccccc------cccccchhhhHHHHHHhhcCC
Confidence            6785 666899999999999999998766      999999999999998875544

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	306
2l2m_A	77	Solution Structure Of The Second Dsrbd Of Hyl1 Leng		2e-09
3adj_A	76	Structure Of Arabidopsis Hyl1 And Its Molecular Imp		2e-09

>pdb|2L2M|A Chain A, Solution Structure Of The Second Dsrbd Of Hyl1 Length = 77

Iteration: 1
 Score = 59.3 bits (142), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 30/58 (51%), Positives = 34/58 (58%), Gaps = 1/58 (1%)
Query: 1  MNYAIPLYQCRKDEASGKV-QFSCTVEIGDIRYXXXXXXXXXXXXXXXXXXXLLAIQS 57
          MNYAIPLYQC+K E  G+V QF+CTVEIG I+Y                   LLAIQS
Sbjct: 20 MNYAIPLYQCQKVETLGRVTQFTCTVEIGGIKYTGAATRTKKDAEISAGRTALLAIQS 77

>pdb|3ADJ|A Chain A, Structure Of Arabidopsis Hyl1 And Its Molecular Implications For Mirna Processing Length = 76

Iteration: 1
 Score = 59.3 bits (142), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 30/58 (51%), Positives = 34/58 (58%), Gaps = 1/58 (1%)
Query: 1  MNYAIPLYQCRKDEASGKV-QFSCTVEIGDIRYXXXXXXXXXXXXXXXXXXXLLAIQS 57
          MNYAIPLYQC+K E  G+V QF+CTVEIG I+Y                   LLAIQS
Sbjct: 17 MNYAIPLYQCQKVETLGRVTQFTCTVEIGGIKYTGAATRTKKDAEISAGRTALLAIQS 74

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	306
3adj_A	76	F21M12.9 protein; HYL1, miRNA processing, RNA bind	3e-13
1qu6_A	179	Protein kinase PKR; dsRNA-binding domain, solution	1e-10
1qu6_A	179	Protein kinase PKR; dsRNA-binding domain, solution	2e-04
1x47_A	98	DGCR8 protein; structural genomics, DSRM domain, N	2e-07
1x49_A	97	Interferon-induced, double-stranded RNA- activated	1e-06
1whq_A	99	RNA helicase A; double-stranded RNA binding domain	3e-06
1whn_A	128	Hypothetical protein riken cDNA 2310016K04; double	1e-05
3c4b_A	265	Endoribonuclease dicer; RNAse, dsRNA binding prote	1e-05
2a11_A	242	Ribonuclease III, RNAse III; nuclease domain, stru	1e-05
2khx_A	85	Ribonuclease 3; drosha, RNA binding domain, hydrol	7e-05
1x48_A	88	Interferon-induced, double-stranded RNA- activated	9e-05
2dix_A	84	Interferon-inducible double stranded RNA- dependen	2e-04
3adg_A	73	F21M12.9 protein; HYL1, miRNA processing mechanism	2e-04
2yt4_A	232	Protein DGCR8; DSRBD, RNA binding domain, RNA bind	2e-04
2yt4_A	232	Protein DGCR8; DSRBD, RNA binding domain, RNA bind	3e-04
2b7v_A	71	Double-stranded RNA-specific editase 1; RNA editin	2e-04
1o0w_A	252	Ribonuclease III, RNAse III; TM1102, structural ge	3e-04
3n3w_A	248	Ribonuclease III; nuclease domain, ribonuclase III	3e-04
3p1x_A	75	Interleukin enhancer-binding factor 3; structural	3e-04
3rv0_A	341	K. polysporus DCR1; RNAse III enzyme, RNA binding	4e-04
1di2_A	69	XLRBPA, double stranded RNA binding protein A; pro	5e-04
3llh_A	90	RISC-loading complex subunit tarbp2; DSRBD, DSRM,	5e-04
1uhz_A	89	Staufen (RNA binding protein) homolog 2; DSRM, sta	6e-04
2l33_A	91	Interleukin enhancer-binding factor 3; structural	8e-04
2nug_A	221	Ribonuclease III, RNAse III; dsRNA, RNA interferen	8e-04

>3adj_A F21M12.9 protein; HYL1, miRNA processing, RNA binding protein, gene regulation; 3.00A {Arabidopsis thaliana} PDB: 2l2m_A Length = 76

 Score = 63.1 bits (154), Expect = 3e-13
 Identities = 40/60 (66%), Positives = 45/60 (75%), Gaps = 1/60 (1%)

Query: 1  MNYAIPLYQCRKDE-ASGKVQFSCTVEIGDIRYIGGAAKTKKEAEIKAARTALLAIQSSA 59
          MNYAIPLYQC+K E      QF+CTVEIG I+Y G A +TKK+AEI A RTALLAIQS  
Sbjct: 17 MNYAIPLYQCQKVETLGRVTQFTCTVEIGGIKYTGAATRTKKDAEISAGRTALLAIQSDT 76

>1qu6_A Protein kinase PKR; dsRNA-binding domain, solution structure, transferase; NMR {Homo sapiens} SCOP: d.50.1.1 d.50.1.1 Length = 179

 Score = 58.4 bits (141), Expect = 1e-10
 Identities = 16/60 (26%), Positives = 24/60 (40%), Gaps = 1/60 (1%)

Query: 1   MNYAIPLYQCRKDEASGKVQFSCTVEIGDIRYIGGAAKTKKEAEIKAARTALLAIQSSAS 60
               +   QC       +  F    ++G   Y  G   TK+EA+  AA+ A L I S  +
Sbjct: 117 KRLTVNYEQCASGVHGPEG-FHYKCKMGQKEYSIGTGSTKQEAKQLAAKLAYLQILSEET 175

>1qu6_A Protein kinase PKR; dsRNA-binding domain, solution structure, transferase; NMR {Homo sapiens} SCOP: d.50.1.1 d.50.1.1 Length = 179

 Score = 40.7 bits (95), Expect = 2e-04
 Identities = 12/47 (25%), Positives = 22/47 (46%)

Query: 20 QFSCTVEIGDIRYIGGAAKTKKEAEIKAARTALLAIQSSASELSGNS 66
          +F+  V I    +  G  ++KKEA+  AA+ A+  +      +S   
Sbjct: 45 RFTFQVIIDGREFPEGEGRSKKEAKNAAAKLAVEILNKEKKAVSPLL 91

>1x47_A DGCR8 protein; structural genomics, DSRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.50.1.1 Length = 98

 Score = 47.5 bits (113), Expect = 2e-07
 Identities = 17/48 (35%), Positives = 24/48 (50%), Gaps = 1/48 (2%)

Query: 5  IPLYQCRKDEASGKVQFSCTVEIGDIRYIGGAAKTKKEAEIKAARTAL 52
           P+Y   + E   +  F  +V I  + Y  G A +KK A+ KAAR  L
Sbjct: 33 RPVYNFFECENPSE-PFGASVTIDGVTYGSGTASSKKLAKNKAARATL 79

>1x49_A Interferon-induced, double-stranded RNA- activated protein kinase; structure genomics, DSRM domain, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.50.1.1 Length = 97

 Score = 45.1 bits (107), Expect = 1e-06
 Identities = 10/51 (19%), Positives = 23/51 (45%)

Query: 20 QFSCTVEIGDIRYIGGAAKTKKEAEIKAARTALLAIQSSASELSGNSAGNT 70
          +F+  V I +  +     ++K+EA   AA+ A+  + +        S  ++
Sbjct: 46 RFTFQVLIDEKEFPEAKGRSKQEARNAAAKLAVDILDNENKVDCHTSGPSS 96

>1whq_A RNA helicase A; double-stranded RNA binding domain, DSRBD, DSRM, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Mus musculus} SCOP: d.50.1.1 PDB: 2rs6_A Length = 99

 Score = 44.1 bits (104), Expect = 3e-06
 Identities = 15/48 (31%), Positives = 23/48 (47%), Gaps = 1/48 (2%)

Query: 6  PLYQCRKDEASGKVQFSCTVEIGDIRYIG-GAAKTKKEAEIKAARTAL 52
          P Y+ R      + +F C V +    Y G G +  KK+A+  AAR  +
Sbjct: 23 PAYEIRAVGNKNRQKFMCEVRVEGFNYAGMGNSTNKKDAQSNAARDFV 70

>1whn_A Hypothetical protein riken cDNA 2310016K04; double-stranded RNA binding domain, DSRBD, DSRM, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.50.1.1 Length = 128

 Score = 43.4 bits (102), Expect = 1e-05
 Identities = 17/96 (17%), Positives = 32/96 (33%), Gaps = 10/96 (10%)

Query: 1   MNYAIPLYQCRKDEASGKVQFSCTVEIGDIRY-IGGAAKTKKEAEIKAARTALLAIQSSA 59
                P+Y+  +   +    F   V + + +Y      K+KK AE  AA   L +     
Sbjct: 39  EKLPQPVYETVQR--TIDRMFCSVVTVAEQKYQSTLWDKSKKLAEQTAAIVCLRSQGLPE 96

Query: 60  SELSGNSAGNTQLTVLPSRKRGPEVANNPEETVNVP 95
             L   S          ++++      +P    + P
Sbjct: 97  GRLGEESPS-------LNKRKREAPDQDPGGPRSGP 125

>3c4b_A Endoribonuclease dicer; RNAse, dsRNA binding protein, ATP-binding, endonuclease, HEL hydrolase, nucleotide-binding, phosphoprotein, RN binding; HET: MSE; 1.68A {Mus musculus} PDB: 3c4t_A 2eb1_A Length = 265

 Score = 44.8 bits (106), Expect = 1e-05
 Identities = 12/54 (22%), Positives = 24/54 (44%), Gaps = 1/54 (1%)

Query: 6   PLYQ-CRKDEASGKVQFSCTVEIGDIRYIGGAAKTKKEAEIKAARTALLAIQSS 58
           P        E +   +   TVE+       G  ++ + A+  AAR AL +++++
Sbjct: 211 PETAKFSPAERTYDGKVRVTVEVVGKGKFKGVGRSYRIAKSAAARRALRSLKAN 264

>2a11_A Ribonuclease III, RNAse III; nuclease domain, structural genomic protein structure initiative; 2.10A {Mycobacterium tuberculosis} Length = 242

 Score = 44.9 bits (107), Expect = 1e-05
 Identities = 16/49 (32%), Positives = 27/49 (55%)

Query: 20  QFSCTVEIGDIRYIGGAAKTKKEAEIKAARTALLAIQSSASELSGNSAG 68
           +F+  V + D  Y  G  ++KKEAE KAA  A  A++   + + G ++ 
Sbjct: 194 EFTAVVVVMDSEYGSGVGRSKKEAEQKAAAAAWKALEVLDNAMPGKTSA 242

>2khx_A Ribonuclease 3; drosha, RNA binding domain, hydrolase, gene regulation, NUCL protein, gene regulation,nuclear protein; NMR {Homo sapiens} Length = 85

 Score = 40.0 bits (94), Expect = 7e-05
 Identities = 9/33 (27%), Positives = 15/33 (45%)

Query: 20 QFSCTVEIGDIRYIGGAAKTKKEAEIKAARTAL 52
           ++  V     R   G   + ++AE+ AA  AL
Sbjct: 39 TYTVAVYFKGERIGCGKGPSIQQAEMGAAMDAL 71

>1x48_A Interferon-induced, double-stranded RNA- activated protein kinase; structure genomics, DSRM domain, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.50.1.1 Length = 88

 Score = 39.6 bits (92), Expect = 9e-05
 Identities = 17/60 (28%), Positives = 29/60 (48%)

Query: 8  YQCRKDEASGKVQFSCTVEIGDIRYIGGAAKTKKEAEIKAARTALLAIQSSASELSGNSA 67
          Y+  +  +    +F C  +IG   Y  G+  TK+EA+  AA+ A   +  S  + +G S 
Sbjct: 25 YEQCEPNSELPQRFICKCKIGQTMYGTGSGVTKQEAKQLAAKEAYQKLLKSPPKTAGTSG 84

>2dix_A Interferon-inducible double stranded RNA- dependent protein kinase activator A; structure genomics, DSRM domain, hypothetical protein PRKRA; NMR {Homo sapiens} SCOP: d.50.1.1 Length = 84

 Score = 38.8 bits (91), Expect = 2e-04
 Identities = 14/42 (33%), Positives = 24/42 (57%), Gaps = 1/42 (2%)

Query: 20 QFSCTVEIGDIRYIGGAAKTKKEAEIKAARTALLAIQSSASE 61
           F+  V +GDI   G    +KK A+ +AA  A+  ++++AS 
Sbjct: 40 TFTFRVTVGDITCTG-EGTSKKLAKHRAAEAAINILKANASG 80

>3adg_A F21M12.9 protein; HYL1, miRNA processing mechanism, RNA binding protein, gene regulation; 1.70A {Arabidopsis thaliana} PDB: 3adi_A Length = 73

 Score = 38.4 bits (90), Expect = 2e-04
 Identities = 17/51 (33%), Positives = 24/51 (47%), Gaps = 1/51 (1%)

Query: 6  PLYQCRKDEASGKVQFSCTVEIGDIRY-IGGAAKTKKEAEIKAARTALLAI 55
          P+Y+  K+  S K  F  TV +  +RY        +K AE  AA  AL  +
Sbjct: 21 PVYEIVKEGPSHKSLFQSTVILDGVRYNSLPGFFNRKAAEQSAAEVALREL 71

>2yt4_A Protein DGCR8; DSRBD, RNA binding domain, RNA binding protein; 2.60A {Homo sapiens} Length = 232

 Score = 40.9 bits (95), Expect = 2e-04
 Identities = 17/72 (23%), Positives = 26/72 (36%)

Query: 21  FSCTVEIGDIRYIGGAAKTKKEAEIKAARTALLAIQSSASELSGNSAGNTQLTVLPSRKR 80
           F  +V I  + Y  G A +KK A+ KAAR  L  +     + +          +      
Sbjct: 54  FGASVTIDGVTYGSGTASSKKLAKNKAARATLEILIPDFVKQTSEEKPKDSEELEYFNHI 113

Query: 81  GPEVANNPEETV 92
             E +   E T 
Sbjct: 114 SIEDSRVYELTS 125

>2yt4_A Protein DGCR8; DSRBD, RNA binding domain, RNA binding protein; 2.60A {Homo sapiens} Length = 232

 Score = 40.5 bits (94), Expect = 3e-04
 Identities = 10/60 (16%), Positives = 20/60 (33%), Gaps = 2/60 (3%)

Query: 2   NYAIPLYQCRKDEASGKVQ-FSCTVEIGDIRYIGGAAKTKKEAEIKAARTALLAIQSSAS 60
           N+ +     + +   GK Q     +  G     G   K K+  +  A++  L  +     
Sbjct: 143 NHGMGDTSIKFEVVPGKNQKSEYVMACGKHTVRG-WCKNKRVGKQLASQKILQLLHPHVK 201

>2b7v_A Double-stranded RNA-specific editase 1; RNA editing, RNA-binding protein, hydrolase; NMR {Rattus norvegicus} SCOP: d.50.1.1 PDB: 2l2k_B Length = 71

 Score = 38.0 bits (89), Expect = 2e-04
 Identities = 10/36 (27%), Positives = 20/36 (55%), Gaps = 1/36 (2%)

Query: 20 QFSCTVEIGDIRYIGGAAKTKKEAEIKAARTALLAI 55
           F  +V +    + G + + KK A+ +AA++AL  +
Sbjct: 32 SFVMSVVVDGQFFEG-SGRNKKLAKARAAQSALATV 66

>1o0w_A Ribonuclease III, RNAse III; TM1102, structural genomics, JCSG, PSI, protein structure initiative, joint center for structural genomics; 2.00A {Thermotoga maritima} SCOP: a.149.1.1 d.50.1.1 Length = 252

 Score = 40.7 bits (96), Expect = 3e-04
 Identities = 14/41 (34%), Positives = 18/41 (43%)

Query: 20  QFSCTVEIGDIRYIGGAAKTKKEAEIKAARTALLAIQSSAS 60
            F   V +       G  +TKKEAE +AAR A   +    S
Sbjct: 212 IFVVEVRVNGKTIATGKGRTKKEAEKEAARIAYEKLLKERS 252

>3n3w_A Ribonuclease III; nuclease domain, ribonuclase III, IDP90862, csgid, structura genomics; 2.21A {Campylobacter jejuni subsp} Length = 248

 Score = 40.6 bits (96), Expect = 3e-04
 Identities = 11/38 (28%), Positives = 18/38 (47%)

Query: 20  QFSCTVEIGDIRYIGGAAKTKKEAEIKAARTALLAIQS 57
           QF   + +         A +KKEA+  AA+ AL  + +
Sbjct: 210 QFEIALMLDGKELARAIAGSKKEAQQMAAKIALEKLGA 247

>3p1x_A Interleukin enhancer-binding factor 3; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.90A {Homo sapiens} Length = 75

 Score = 37.6 bits (88), Expect = 3e-04
 Identities = 12/35 (34%), Positives = 17/35 (48%), Gaps = 1/35 (2%)

Query: 21 FSCTVEIGDIRYIGGAAKTKKEAEIKAARTALLAI 55
          F   VE+   ++ G A   KK A+  AA  AL  +
Sbjct: 36 FVMEVEVDGQKFQG-AGSNKKVAKAYAALAALEKL 69

>3rv0_A K. polysporus DCR1; RNAse III enzyme, RNA binding protein; 2.29A {Vanderwaltozyma polyspora} Length = 341

 Score = 40.5 bits (95), Expect = 4e-04
 Identities = 12/32 (37%), Positives = 16/32 (50%)

Query: 21  FSCTVEIGDIRYIGGAAKTKKEAEIKAARTAL 52
           F   V+IGDI        + +EAE +AA   L
Sbjct: 284 FRVEVKIGDILLDEAEGNSIREAEHRAAMKVL 315

>1di2_A XLRBPA, double stranded RNA binding protein A; protein-RNA complex, protein-RNA interactions, RNA-bining protein; 1.90A {Xenopus laevis} SCOP: d.50.1.1 Length = 69

 Score = 37.2 bits (87), Expect = 5e-04
 Identities = 8/38 (21%), Positives = 17/38 (44%), Gaps = 1/38 (2%)

Query: 20 QFSCTVEIGDIRYIGGAAKTKKEAEIKAARTALLAIQS 57
          +F+ T  +      G +  +K+ A+  AA   L   ++
Sbjct: 33 EFTITCRVETFVETG-SGTSKQVAKRVAAEKLLTKFKT 69

>3llh_A RISC-loading complex subunit tarbp2; DSRBD, DSRM, microrna, RNA binding protein; 2.14A {Homo sapiens} Length = 90

 Score = 37.3 bits (87), Expect = 5e-04
 Identities = 13/41 (31%), Positives = 20/41 (48%), Gaps = 1/41 (2%)

Query: 20 QFSCTVEIGDIRYIGGAAKTKKEAEIKAARTALLAIQSSAS 60
           F+  V +GD    G    +KK A+ KAA  AL  ++  + 
Sbjct: 46 NFTFRVTVGDTSCTG-QGPSKKAAKHKAAEVALKHLKGGSM 85

>1uhz_A Staufen (RNA binding protein) homolog 2; DSRM, staufen homolog 2, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.50.1.1 Length = 89

 Score = 37.3 bits (87), Expect = 6e-04
 Identities = 14/51 (27%), Positives = 23/51 (45%), Gaps = 1/51 (1%)

Query: 20 QFSCTVEIGDIRYIGGAAKTKKEAEIKAARTALLAIQSSASELSGNSAGNT 70
          +F   V++G+    G     KK A+  AA   LL +   AS    +S  ++
Sbjct: 39 EFVMQVKVGNEVATG-TGPNKKIAKKNAAEAMLLQLGYKASTSLQDSGPSS 88

>2l33_A Interleukin enhancer-binding factor 3; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, DRBM; NMR {Homo sapiens} Length = 91

 Score = 37.0 bits (86), Expect = 8e-04
 Identities = 12/41 (29%), Positives = 17/41 (41%), Gaps = 1/41 (2%)

Query: 21 FSCTVEIGDIRYIGGAAKTKKEAEIKAARTALLAIQSSASE 61
          F   VE+   ++ G A   KK A+  AA  AL  +      
Sbjct: 46 FVMEVEVDGQKFQG-AGSNKKVAKAYAALAALEKLFPDTPL 85

>2nug_A Ribonuclease III, RNAse III; dsRNA, RNA interference, endonucleolytic cleavage, hydrolase/RNA complex; 1.70A {Aquifex aeolicus} SCOP: a.149.1.1 d.50.1.1 PDB: 1yyw_A 2nue_A 2nuf_A 1yyk_A 1yz9_A 1yyo_A 2ez6_A 1rc7_A 1i4s_A 1jfz_A 1rc5_A Length = 221

 Score = 39.0 bits (92), Expect = 8e-04
 Identities = 13/39 (33%), Positives = 22/39 (56%), Gaps = 1/39 (2%)

Query: 20  QFSCTVEIGDIRYIGGAAKTKKEAEIKAARTALLAIQSS 58
           +F    +I + R +G   K+KKEAE +AA   +  ++ S
Sbjct: 183 KFIVEAKIKEYRTLG-EGKSKKEAEQRAAEELIKLLEES 220

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	306
3adg_A	73	F21M12.9 protein; HYL1, miRNA processing mechanism	99.67
3adj_A	76	F21M12.9 protein; HYL1, miRNA processing, RNA bind	99.66
1di2_A	69	XLRBPA, double stranded RNA binding protein A; pro	99.64
2khx_A	85	Ribonuclease 3; drosha, RNA binding domain, hydrol	99.61
2l2n_A	103	Hyponastic leave 1; DSRBD, miRNA, RNA binding prot	99.59
1t4n_A	94	Ribonuclease III; DSRBD, RNA-binding, hydrolase; N	99.59
2dix_A	84	Interferon-inducible double stranded RNA- dependen	99.59
2b7t_A	73	Double-stranded RNA-specific editase 1; RNA editin	99.59
3p1x_A	75	Interleukin enhancer-binding factor 3; structural	99.59
2cpn_A	89	TAR RNA-binding protein 2; double-stranded RNA bin	99.59
2b7v_A	71	Double-stranded RNA-specific editase 1; RNA editin	99.58
3adl_A	88	RISC-loading complex subunit tarbp2; TRBP2, miRNA	99.58
1uhz_A	89	Staufen (RNA binding protein) homolog 2; DSRM, sta	99.57
3llh_A	90	RISC-loading complex subunit tarbp2; DSRBD, DSRM,	99.56
2l33_A	91	Interleukin enhancer-binding factor 3; structural	99.54
1ekz_A	76	DSRBDIII, maternal effect protein (staufen); struc	99.54
1x49_A	97	Interferon-induced, double-stranded RNA- activated	99.54
1whq_A	99	RNA helicase A; double-stranded RNA binding domain	99.53
1t4o_A	117	Ribonuclease III; RNT1P, DSRBD, RNA-binding, hydro	99.52
1uil_A	113	Double-stranded RNA-binding motif; structural geno	99.52
2dmy_A	97	Spermatid perinuclear RNA-binding protein; DSRM do	99.52
1x48_A	88	Interferon-induced, double-stranded RNA- activated	99.51
2ljh_A	114	Double-stranded RNA-specific editase ADAR; DSRBD,	99.45
1x47_A	98	DGCR8 protein; structural genomics, DSRM domain, N	99.43
1whn_A	128	Hypothetical protein riken cDNA 2310016K04; double	99.43
1qu6_A	179	Protein kinase PKR; dsRNA-binding domain, solution	99.34
1o0w_A	252	Ribonuclease III, RNAse III; TM1102, structural ge	99.3
2l3j_A	236	Double-stranded RNA-specific editase 1; editing, d	99.28
2l3j_A	236	Double-stranded RNA-specific editase 1; editing, d	99.27
2a11_A	242	Ribonuclease III, RNAse III; nuclease domain, stru	99.19
2yt4_A	232	Protein DGCR8; DSRBD, RNA binding domain, RNA bind	99.13
1qu6_A	179	Protein kinase PKR; dsRNA-binding domain, solution	99.06
2yt4_A	232	Protein DGCR8; DSRBD, RNA binding domain, RNA bind	98.95
3rv0_A	341	K. polysporus DCR1; RNAse III enzyme, RNA binding	98.48
3htx_A	950	HEN1; HEN1, small RNA methyltransferase, protein-R	91.55
2kou_A	102	Dicer-like protein 4; ATP-binding, endonuclease, h	86.32
2db2_A	119	KIAA0890 protein; DSRM domain, structural genomics	80.43

>3adg_A F21M12.9 protein; HYL1, miRNA processing mechanism, RNA binding protein, gene regulation; 1.70A {Arabidopsis thaliana} PDB: 3adi_A

Probab=99.67  E-value=1.7e-16  Score=117.31  Aligned_cols=55  Identities=31%  Similarity=0.398  Sum_probs=51.1

Q ss_pred             CCCCceEEeeccCCCCCceEEEEEEECCEEeeCCCC-CCHHHHHHHHHHHHHHHHh
Q 021849            2 NYAIPLYQCRKDEASGKVQFSCTVEIGDIRYIGGAA-KTKKEAEIKAARTALLAIQ   56 (306)
Q Consensus         2 nL~lP~Y~i~ksGPdHdk~FtAeV~IgGk~yG~G~G-rSKKEAEQaAAK~AL~aL~   56 (306)
                      .+.+|.|++..+||+|+++|+|+|+|+|+.|+.|.| +|||+|||.||+.||..|.
T Consensus        17 ~~~~p~Y~~~~~Gp~h~~~F~~~v~v~g~~~~~G~G~~sKK~Aeq~AA~~al~~L~   72 (73)
T 3adg_A           17 KLPTPVYEIVKEGPSHKSLFQSTVILDGVRYNSLPGFFNRKAAEQSAAEVALRELA   72 (73)
T ss_dssp             TCCCCEEEEEEESSTTSCEEEEEEEETTEEEECCSCBSSHHHHHHHHHHHHHHHHT
T ss_pred             CCCCCEEEEEeECCCCCCeEEEEEEECCEEEEeeeccCCHHHHHHHHHHHHHHHhh
Confidence            357899987767999999999999999999999999 9999999999999999885

>3adj_A F21M12.9 protein; HYL1, miRNA processing, RNA binding protein, gene regulation; 3.00A {Arabidopsis thaliana} PDB: 2l2m_A

Probab=99.66  E-value=1.9e-16  Score=118.39  Aligned_cols=56  Identities=66%  Similarity=1.039  Sum_probs=51.5

Q ss_pred             CCCCceEEe-eccCCCCCceEEEEEEECCEEeeCCCCCCHHHHHHHHHHHHHHHHhh
Q 021849            2 NYAIPLYQC-RKDEASGKVQFSCTVEIGDIRYIGGAAKTKKEAEIKAARTALLAIQS   57 (306)
Q Consensus         2 nL~lP~Y~i-~ksGPdHdk~FtAeV~IgGk~yG~G~GrSKKEAEQaAAK~AL~aL~~   57 (306)
                      .+.+|.|.+ ..+||+|++.|+|+|+|+|+.|+.|.|+|||+|||.||+.||..|..
T Consensus        18 ~~~~p~Y~~~~~~Gp~h~~~F~~~v~v~g~~~~~G~G~sKK~Aeq~AA~~al~~L~~   74 (76)
T 3adj_A           18 NYAIPLYQCQKVETLGRVTQFTCTVEIGGIKYTGAATRTKKDAEISAGRTALLAIQS   74 (76)
T ss_dssp             TCCCCEEEEEEEECSSSCEEEEEEEEETTEEEECCCBSSHHHHHHHHHHHHHHHHHC
T ss_pred             CCCCCeEEEeeccCCCCCCcEEEEEEECCEEEEEeccCCHHHHHHHHHHHHHHHHhh
Confidence            357899985 56899999999999999999999999999999999999999999864

>1di2_A XLRBPA, double stranded RNA binding protein A; protein-RNA complex, protein-RNA interactions, RNA-bining protein; 1.90A {Xenopus laevis} SCOP: d.50.1.1

Probab=99.64  E-value=1.7e-16  Score=116.01  Aligned_cols=54  Identities=20%  Similarity=0.332  Sum_probs=49.7

Q ss_pred             CCCCceEEe-eccCCCCCceEEEEEEECCEEeeCCCCCCHHHHHHHHHHHHHHHHh
Q 021849            2 NYAIPLYQC-RKDEASGKVQFSCTVEIGDIRYIGGAAKTKKEAEIKAARTALLAIQ   56 (306)
Q Consensus         2 nL~lP~Y~i-~ksGPdHdk~FtAeV~IgGk~yG~G~GrSKKEAEQaAAK~AL~aL~   56 (306)
                      .+.+|.|.+ ..+||+|++.|+|+|+|+|+ ++.|.|+|||+|||.||+.||..|.
T Consensus        14 ~~~~p~Y~~~~~~Gp~h~~~F~~~v~v~~~-~~~G~G~sKK~Aeq~AA~~al~~L~   68 (69)
T 1di2_A           14 GWRLPEYTVAQESGPPHKREFTITCRVETF-VETGSGTSKQVAKRVAAEKLLTKFK   68 (69)
T ss_dssp             TCCCCEEEEEEEESCGGGCEEEEEEEETTE-EEEEEESSHHHHHHHHHHHHHHHHH
T ss_pred             CCCCCEEEEEEeECCCCCCeEEEEEEECCE-EEEeecCCHHHHHHHHHHHHHHHHh
Confidence            357899985 56899999999999999998 9999999999999999999999985

>2khx_A Ribonuclease 3; drosha, RNA binding domain, hydrolase, gene regulation, NUCL protein, gene regulation,nuclear protein; NMR {Homo sapiens}

Probab=99.61  E-value=3.6e-16  Score=120.35  Aligned_cols=55  Identities=25%  Similarity=0.244  Sum_probs=50.4

Q ss_pred             CCCceEEe-eccCCCCCceEEEEEEECCEEeeCCCCCCHHHHHHHHHHHHHHHHhh
Q 021849            3 YAIPLYQC-RKDEASGKVQFSCTVEIGDIRYIGGAAKTKKEAEIKAARTALLAIQS   57 (306)
Q Consensus         3 L~lP~Y~i-~ksGPdHdk~FtAeV~IgGk~yG~G~GrSKKEAEQaAAK~AL~aL~~   57 (306)
                      +.+|.|++ ..+||+|+++|+|+|+|+|+.|+.|.|+|||+|||.||+.||..|..
T Consensus        21 ~~~p~Y~~~~~~Gp~H~~~F~v~V~v~g~~~~~G~G~SKK~AEq~AA~~AL~~L~~   76 (85)
T 2khx_A           21 PDIPLYKTLQTVGPSHARTYTVAVYFKGERIGCGKGPSIQQAEMGAAMDALEKYNF   76 (85)
T ss_dssp             CCCCCEEECCCCCSSSCCCEEEEEEETTEECCCEEESSHHHHHHHHHHHHHTTCCS
T ss_pred             CCCceEEEEEeECCCCCCcEEEEEEECCEEEEEEeeCCHHHHHHHHHHHHHHHHhH
Confidence            46899985 55899999999999999999999999999999999999999988753

>2l2n_A Hyponastic leave 1; DSRBD, miRNA, RNA binding protein, plant protein; NMR {Arabidopsis thaliana}

Probab=99.59  E-value=2.9e-15  Score=118.85  Aligned_cols=58  Identities=31%  Similarity=0.397  Sum_probs=53.2

Q ss_pred             CCCCceEEeeccCCCCCceEEEEEEECCEEeeCCCC-CCHHHHHHHHHHHHHHHHhhhc
Q 021849            2 NYAIPLYQCRKDEASGKVQFSCTVEIGDIRYIGGAA-KTKKEAEIKAARTALLAIQSSA   59 (306)
Q Consensus         2 nL~lP~Y~i~ksGPdHdk~FtAeV~IgGk~yG~G~G-rSKKEAEQaAAK~AL~aL~~~s   59 (306)
                      .+.+|.|++..+||+|+++|+|+|+|+|+.|+.|.| +|||+|||.||+.||..|....
T Consensus        31 ~~~~P~Y~~~~~Gp~H~~~F~~~V~v~g~~~~~G~G~~SKK~Aeq~AA~~AL~~L~~~~   89 (103)
T 2l2n_A           31 KLPTPVYEIVKEGPSHKSLFQSTVILDGVRYNSLPGFFNRKAAEQSAAEVALRELAKSS   89 (103)
T ss_dssp             TCCCCEEEEEEESCSSSCEEEEEEEETTEEEECCSCBSSHHHHHHHHHHHHHHHHHHHC
T ss_pred             CCCCCeEEEEeEcCCCCCeEEEEEEECCEEEEEeecCCCHHHHHHHHHHHHHHHHhccc
Confidence            357899987777999999999999999999999999 9999999999999999998543

>1t4n_A Ribonuclease III; DSRBD, RNA-binding, hydrolase; NMR {Saccharomyces cerevisiae} SCOP: d.50.1.1

Probab=99.59  E-value=5.3e-16  Score=123.53  Aligned_cols=55  Identities=22%  Similarity=0.110  Sum_probs=51.0

Q ss_pred             CCCceEEeeccCCCCCceEEEEEEECCE-EeeCCCCCCHHHHHHHHHHHHHHHHhh
Q 021849            3 YAIPLYQCRKDEASGKVQFSCTVEIGDI-RYIGGAAKTKKEAEIKAARTALLAIQS   57 (306)
Q Consensus         3 L~lP~Y~i~ksGPdHdk~FtAeV~IgGk-~yG~G~GrSKKEAEQaAAK~AL~aL~~   57 (306)
                      ..+|.|++..+||+|+++|+|+|+|+|+ .+|.|.|+|||+|||+||+.||..|.-
T Consensus        20 ~~~p~Y~v~~~GpdH~k~F~v~v~i~~~~~~g~G~G~SKK~AEQ~AA~~AL~~l~~   75 (94)
T 1t4n_A           20 SLRLHYVTVKKPTAVDPNSIVECRVGDGTVLGTGVGRNIKIAGIRAAENALRDKKM   75 (94)
T ss_dssp             SSCCEEEECCCCSSSCCSEEEEEECSSSCEEEEEEESSHHHHHHHHHHHHHHCHHH
T ss_pred             CCCCEEEEeeeCCCCCCeEEEEEEECCEEEEEEEEeCCHHHHHHHHHHHHHHHHHH
Confidence            3579998877799999999999999999 999999999999999999999998873

>2dix_A Interferon-inducible double stranded RNA- dependent protein kinase activator A; structure genomics, DSRM domain, hypothetical protein PRKRA; NMR {Homo sapiens} SCOP: d.50.1.1

Probab=99.59  E-value=1.9e-15  Score=115.45  Aligned_cols=55  Identities=33%  Similarity=0.521  Sum_probs=50.3

Q ss_pred             CCceEEe-eccCCCCCceEEEEEEECCEEeeCCCCCCHHHHHHHHHHHHHHHHhhhc
Q 021849            4 AIPLYQC-RKDEASGKVQFSCTVEIGDIRYIGGAAKTKKEAEIKAARTALLAIQSSA   59 (306)
Q Consensus         4 ~lP~Y~i-~ksGPdHdk~FtAeV~IgGk~yG~G~GrSKKEAEQaAAK~AL~aL~~~s   59 (306)
                      ..|.|++ ..+||+|+++|+|+|+|+| .++.|.|+|||+|||.||+.||..|....
T Consensus        23 ~~p~Y~~~~~~Gp~h~~~F~~~v~v~~-~~~~G~G~SKK~Aeq~AA~~aL~~L~~~~   78 (84)
T 2dix_A           23 NIPVYECERSDVQIHVPTFTFRVTVGD-ITCTGEGTSKKLAKHRAAEAAINILKANA   78 (84)
T ss_dssp             CCCEEEEEEEECSSSSCEEEEEEEETT-EEEEECSSCTTHHHHHHHHHHHHHHHHTC
T ss_pred             CCCeEEEEEeECCCCCCeEEEEEEECC-EEEEeeeCCHHHHHHHHHHHHHHHHhccc
Confidence            5799985 5689999999999999999 99999999999999999999999997443

>2b7t_A Double-stranded RNA-specific editase 1; RNA editing, RNA-binding protein, hydrolase; NMR {Rattus norvegicus} SCOP: d.50.1.1 PDB: 2l3c_A

Probab=99.59  E-value=8.8e-16  Score=113.77  Aligned_cols=53  Identities=25%  Similarity=0.266  Sum_probs=48.8

Q ss_pred             CCCceEEe-eccCCCCCceEEEEEEECCEEeeCCCCCCHHHHHHHHHHHHHHHHh
Q 021849            3 YAIPLYQC-RKDEASGKVQFSCTVEIGDIRYIGGAAKTKKEAEIKAARTALLAIQ   56 (306)
Q Consensus         3 L~lP~Y~i-~ksGPdHdk~FtAeV~IgGk~yG~G~GrSKKEAEQaAAK~AL~aL~   56 (306)
                      ..+|.|.+ ..+||+|+++|+++|.|+|+.+ .|.|+|||+|||.||+.||..|.
T Consensus        17 ~~~p~Y~~~~~~Gp~h~~~F~~~v~v~g~~~-~G~G~SKK~Aeq~AA~~al~~L~   70 (73)
T 2b7t_A           17 KPGLQYMLLSQTGPVHAPLFVMSVEVNGQVF-EGSGPTKKKAKLHAAEKALRSFV   70 (73)
T ss_dssp             CSCCEEEEEEEECSSSSCEEEEEEESSSSEE-EEEESSHHHHHHHHHHHHHHHHH
T ss_pred             CCCceEEEEEeeCCCCCCeEEEEEEECCEEE-EeecCCHHHHHHHHHHHHHHHHh
Confidence            46899985 5589999999999999999997 99999999999999999999986

>3p1x_A Interleukin enhancer-binding factor 3; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.90A {Homo sapiens}

Probab=99.59  E-value=1.6e-15  Score=113.83  Aligned_cols=54  Identities=26%  Similarity=0.269  Sum_probs=49.5

Q ss_pred             CCceEEe-eccCCCCCceEEEEEEECCEEeeCCCCCCHHHHHHHHHHHHHHHHhhh
Q 021849            4 AIPLYQC-RKDEASGKVQFSCTVEIGDIRYIGGAAKTKKEAEIKAARTALLAIQSS   58 (306)
Q Consensus         4 ~lP~Y~i-~ksGPdHdk~FtAeV~IgGk~yG~G~GrSKKEAEQaAAK~AL~aL~~~   58 (306)
                      ..|.|++ ..+||+|+++|+++|+|+|+.| .|.|+|||+|||.||+.||..|...
T Consensus        18 ~~p~Y~~~~~~Gp~H~~~F~~~v~v~g~~~-~G~G~SKK~Aeq~AA~~al~~L~~~   72 (75)
T 3p1x_A           18 RGLKYELISETGGSHDKRFVMEVEVDGQKF-QGAGSNKKVAKAYAALAALEKLFPD   72 (75)
T ss_dssp             TTCCEEEEEEESCTTSCEEEEEEEETTEEE-EEEESSHHHHHHHHHHHHHHHHCTT
T ss_pred             CCCEEEEEEeeCCCCCceEEEEEEECCEEE-EEEECCHHHHHHHHHHHHHHHHHcc
Confidence            4789985 4589999999999999999999 9999999999999999999999754

>2cpn_A TAR RNA-binding protein 2; double-stranded RNA binding domain, DSRBD, DSRM., structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.50.1.1

Probab=99.59  E-value=1.9e-15  Score=117.22  Aligned_cols=56  Identities=21%  Similarity=0.361  Sum_probs=50.8

Q ss_pred             CCCCceEEe-eccCCCCCceEEEEEEECCEEeeCCCCCCHHHHHHHHHHHHHHHHhhh
Q 021849            2 NYAIPLYQC-RKDEASGKVQFSCTVEIGDIRYIGGAAKTKKEAEIKAARTALLAIQSS   58 (306)
Q Consensus         2 nL~lP~Y~i-~ksGPdHdk~FtAeV~IgGk~yG~G~GrSKKEAEQaAAK~AL~aL~~~   58 (306)
                      .+.+|.|++ ..+||+|+++|+|+|+|+|+ ++.|.|+|||+|||.||+.||..|...
T Consensus        30 ~~~~P~Y~~~~~~Gp~h~~~F~~~v~i~g~-~~~G~G~SKK~Aeq~AA~~AL~~L~~~   86 (89)
T 2cpn_A           30 GWRLPEYTVTQESGPAHRKEFTMTCRVERF-IEIGSGTSKKLAKRNAAAKMLLRVSGP   86 (89)
T ss_dssp             TCCCCEEEEEEEECCSSSCEEEEEEEETTE-EEEEEESSHHHHHHHHHHHHHHHHHSC
T ss_pred             CCCCCeEEEEeeECCCCCCeEEEEEEECCE-EEEeeeCCHHHHHHHHHHHHHHHHHhh
Confidence            356899985 56899999999999999998 999999999999999999999999643

>2b7v_A Double-stranded RNA-specific editase 1; RNA editing, RNA-binding protein, hydrolase; NMR {Rattus norvegicus} SCOP: d.50.1.1 PDB: 2l2k_B

Probab=99.58  E-value=1.6e-15  Score=111.63  Aligned_cols=53  Identities=23%  Similarity=0.285  Sum_probs=48.7

Q ss_pred             CCceEEe-eccCCCCCceEEEEEEECCEEeeCCCCCCHHHHHHHHHHHHHHHHhh
Q 021849            4 AIPLYQC-RKDEASGKVQFSCTVEIGDIRYIGGAAKTKKEAEIKAARTALLAIQS   57 (306)
Q Consensus         4 ~lP~Y~i-~ksGPdHdk~FtAeV~IgGk~yG~G~GrSKKEAEQaAAK~AL~aL~~   57 (306)
                      ..|.|++ ..+||+|+++|+|+|+|+|+.+ .|.|+|||+|||.||+.||..|..
T Consensus        15 ~~p~Y~~~~~~Gp~h~~~F~~~v~v~~~~~-~G~G~SKK~Aeq~AA~~al~~L~~   68 (71)
T 2b7v_A           15 PGLKYDFLSESGESHAKSFVMSVVVDGQFF-EGSGRNKKLAKARAAQSALATVFN   68 (71)
T ss_dssp             CSCEEEEEECCCCTTTCCEEEEEECSSCEE-EEEESSHHHHHHHHHHHHHHHHHH
T ss_pred             CCCEEEEEEeECCCCCceEEEEEEECCEEE-EEeeCCHHHHHHHHHHHHHHHHHh
Confidence            5799985 5689999999999999999986 899999999999999999999864

>3adl_A RISC-loading complex subunit tarbp2; TRBP2, miRNA processing, gene regulation-RNA complex; 2.20A {Homo sapiens}

Probab=99.58  E-value=2.8e-15  Score=116.26  Aligned_cols=55  Identities=22%  Similarity=0.378  Sum_probs=50.4

Q ss_pred             CCCCceEEe-eccCCCCCceEEEEEEECCEEeeCCCCCCHHHHHHHHHHHHHHHHhh
Q 021849            2 NYAIPLYQC-RKDEASGKVQFSCTVEIGDIRYIGGAAKTKKEAEIKAARTALLAIQS   57 (306)
Q Consensus         2 nL~lP~Y~i-~ksGPdHdk~FtAeV~IgGk~yG~G~GrSKKEAEQaAAK~AL~aL~~   57 (306)
                      .+.+|.|++ ..+||+|+++|+|+|+|+|+ ++.|.|+|||+|||.||+.||..|..
T Consensus        29 ~~~~P~Y~~~~~~Gp~H~~~F~~~v~v~g~-~~~G~G~SKK~Aeq~AA~~AL~~L~~   84 (88)
T 3adl_A           29 GWRLPEYTVTQESGPAHRKEFTMTCRVERF-IEIGSGTSKKLAKRNAAAKMLLRVHT   84 (88)
T ss_dssp             TCCCCEEEEEEEESCTTSCEEEEEEEETTE-EEEEEESSHHHHHHHHHHHHHHHHHC
T ss_pred             CCCCCEEEEEEeECCCCCCeEEEEEEECCE-EEEEeeCCHHHHHHHHHHHHHHHHHc
Confidence            357899985 56899999999999999998 99999999999999999999999964

>1uhz_A Staufen (RNA binding protein) homolog 2; DSRM, staufen homolog 2, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.50.1.1

Probab=99.57  E-value=3.1e-15  Score=115.97  Aligned_cols=56  Identities=23%  Similarity=0.278  Sum_probs=50.7

Q ss_pred             CCCCceEEe-eccCCCCCceEEEEEEECCEEeeCCCCCCHHHHHHHHHHHHHHHHhhh
Q 021849            2 NYAIPLYQC-RKDEASGKVQFSCTVEIGDIRYIGGAAKTKKEAEIKAARTALLAIQSS   58 (306)
Q Consensus         2 nL~lP~Y~i-~ksGPdHdk~FtAeV~IgGk~yG~G~GrSKKEAEQaAAK~AL~aL~~~   58 (306)
                      .+.+|.|++ ..+||+|+++|+|+|+|+|+ ++.|.|+|||+|||.||+.||..|...
T Consensus        20 ~~~~P~Y~~~~~~Gp~H~~~F~~~v~v~g~-~~~G~G~SKK~Aeq~AA~~AL~~L~~~   76 (89)
T 1uhz_A           20 KEKEPDYILLSERGMPRRREFVMQVKVGNE-VATGTGPNKKIAKKNAAEAMLLQLGYK   76 (89)
T ss_dssp             TSCCCEEEEEEEESCSTTCEEEEEEEETTE-EEEEEESSHHHHHHHHHHHHHHHHTSS
T ss_pred             CCCCCeEEEEEeECCCCCCeEEEEEEECCE-EEEEeeCCHHHHHHHHHHHHHHHHhcc
Confidence            357899985 55899999999999999997 999999999999999999999999743

>3llh_A RISC-loading complex subunit tarbp2; DSRBD, DSRM, microrna, RNA binding protein; 2.14A {Homo sapiens}

Probab=99.56  E-value=3.6e-15  Score=115.22  Aligned_cols=54  Identities=28%  Similarity=0.450  Sum_probs=43.6

Q ss_pred             CCceEEe-eccCCCCCceEEEEEEECCEEeeCCCCCCHHHHHHHHHHHHHHHHhhh
Q 021849            4 AIPLYQC-RKDEASGKVQFSCTVEIGDIRYIGGAAKTKKEAEIKAARTALLAIQSS   58 (306)
Q Consensus         4 ~lP~Y~i-~ksGPdHdk~FtAeV~IgGk~yG~G~GrSKKEAEQaAAK~AL~aL~~~   58 (306)
                      ..|.|++ ..+||+|+++|+++|+|+|+ ++.|.|+|||+|||.||+.||..|...
T Consensus        29 ~~p~Y~~~~~~Gp~H~~~F~~~v~v~g~-~~~G~G~SKK~Aeq~AA~~aL~~L~~~   83 (90)
T 3llh_A           29 KTPVYDLLKAEGQAHQPNFTFRVTVGDT-SCTGQGPSKKAAKHKAAEVALKHLKGG   83 (90)
T ss_dssp             CCCEEEEEEEC-----CCEEEEEEETTE-EEEEEESSHHHHHHHHHHHHHHHHC--
T ss_pred             CCCEEEEEEeECCCCCCcEEEEEEECCE-EEEEEeCCHHHHHHHHHHHHHHHHHhc
Confidence            4799985 67899999999999999998 799999999999999999999999754

>2l33_A Interleukin enhancer-binding factor 3; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, DRBM; NMR {Homo sapiens}

Probab=99.54  E-value=6.2e-15  Score=115.77  Aligned_cols=55  Identities=25%  Similarity=0.274  Sum_probs=50.1

Q ss_pred             CceEEe-eccCCCCCceEEEEEEECCEEeeCCCCCCHHHHHHHHHHHHHHHHhhhcc
Q 021849            5 IPLYQC-RKDEASGKVQFSCTVEIGDIRYIGGAAKTKKEAEIKAARTALLAIQSSAS   60 (306)
Q Consensus         5 lP~Y~i-~ksGPdHdk~FtAeV~IgGk~yG~G~GrSKKEAEQaAAK~AL~aL~~~s~   60 (306)
                      .|.|++ ..+||+|+++|+|+|+|+|+.+ .|+|+|||+|||.||+.||..|.....
T Consensus        29 ~p~Y~~v~~~Gp~H~~~F~v~V~v~g~~~-~G~G~SKK~AEq~AA~~AL~~L~~~~~   84 (91)
T 2l33_A           29 GLKYELISETGGSHDKRFVMEVEVDGQKF-QGAGSNKKVAKAYAALAALEKLFPDTP   84 (91)
T ss_dssp             SCEEEEEEEEECSSCEEEEEEEEETTEEE-EEEESSHHHHHHHHHHHHHHHHCCCCC
T ss_pred             CCeEEEEEeeCCCCCCeEEEEEEECCEEE-EeeeCCHHHHHHHHHHHHHHHHhhcCC
Confidence            799975 5689999999999999999997 999999999999999999999975544

>1ekz_A DSRBDIII, maternal effect protein (staufen); structure, protein/RNA, protein DSRBD, RNA hairpin; NMR {Drosophila melanogaster} SCOP: d.50.1.1 PDB: 1stu_A

Probab=99.54  E-value=1.7e-15  Score=112.72  Aligned_cols=52  Identities=19%  Similarity=0.301  Sum_probs=48.4

Q ss_pred             CCCceEEe-eccCCCCCceEEEEEEECCEEeeCCCCCCHHHHHHHHHHHHHHHHh
Q 021849            3 YAIPLYQC-RKDEASGKVQFSCTVEIGDIRYIGGAAKTKKEAEIKAARTALLAIQ   56 (306)
Q Consensus         3 L~lP~Y~i-~ksGPdHdk~FtAeV~IgGk~yG~G~GrSKKEAEQaAAK~AL~aL~   56 (306)
                      +. |.|.+ ..+||+|++.|+|+|+|+| .++.|.|+|||+|||.||+.||..|.
T Consensus        22 ~~-p~Y~~~~~~Gp~h~~~F~~~v~i~~-~~~~G~G~sKK~Aeq~AA~~aL~~L~   74 (76)
T 1ekz_A           22 MT-VHFKVLREEGPAHMKNFITACIVGS-IVTEGEGNGKKVSKKRAAEKMLVELQ   74 (76)
T ss_dssp             CC-CEEEESSSCCSSSCSCSSEEEEETT-EEEEECCCSTTSSSHHHHHHHHHHHT
T ss_pred             CC-CEEEEEEeECCCCCCcEEEEEEECC-EEEEEeeCCHHHHHHHHHHHHHHHHh
Confidence            45 99985 5689999999999999999 99999999999999999999999985

>1x49_A Interferon-induced, double-stranded RNA- activated protein kinase; structure genomics, DSRM domain, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.50.1.1

Probab=99.54  E-value=6.6e-15  Score=115.88  Aligned_cols=56  Identities=18%  Similarity=0.231  Sum_probs=50.7

Q ss_pred             CceEEe-eccCCCCCceEEEEEEECCEEeeCCCCCCHHHHHHHHHHHHHHHHhhhcc
Q 021849            5 IPLYQC-RKDEASGKVQFSCTVEIGDIRYIGGAAKTKKEAEIKAARTALLAIQSSAS   60 (306)
Q Consensus         5 lP~Y~i-~ksGPdHdk~FtAeV~IgGk~yG~G~GrSKKEAEQaAAK~AL~aL~~~s~   60 (306)
                      .|.|++ ..+||+|+++|+|+|+|+|+.|+.|.|+|||+|||.||+.||..|.....
T Consensus        30 ~p~Y~~~~~~Gp~H~~~F~v~v~i~g~~~~~G~G~SKK~Aeq~AA~~AL~~L~~~~~   86 (97)
T 1x49_A           30 AITYKELSTSGPPHDRRFTFQVLIDEKEFPEAKGRSKQEARNAAAKLAVDILDNENK   86 (97)
T ss_dssp             CEEEEEEEEESCSSSCEEEEEEEESSCCCCCEEESSHHHHHHHHHHHHHHHHTTTCC
T ss_pred             CCeEEEEEeeCCCCCCcEEEEEEECCEEEEEEeeCCHHHHHHHHHHHHHHHHHhhcC
Confidence            389974 56899999999999999999999999999999999999999999975433

>1whq_A RNA helicase A; double-stranded RNA binding domain, DSRBD, DSRM, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Mus musculus} SCOP: d.50.1.1 PDB: 2rs6_A

Probab=99.53  E-value=3.5e-15  Score=118.02  Aligned_cols=57  Identities=23%  Similarity=0.272  Sum_probs=52.6

Q ss_pred             CCCceEEeeccCCCCCceEEEEEEECC-EEeeCCCCCCHHHHHHHHHHHHHHHHhhhc
Q 021849            3 YAIPLYQCRKDEASGKVQFSCTVEIGD-IRYIGGAAKTKKEAEIKAARTALLAIQSSA   59 (306)
Q Consensus         3 L~lP~Y~i~ksGPdHdk~FtAeV~IgG-k~yG~G~GrSKKEAEQaAAK~AL~aL~~~s   59 (306)
                      +..|.|++..+||+|+++|+|+|+|+| +.++.|.|+|||+|||.||+.||..|....
T Consensus        20 ~~~P~Y~~~~~Gp~H~~~F~~~V~v~g~~~~~~G~G~SKK~Aeq~AA~~AL~~L~~~~   77 (99)
T 1whq_A           20 KMTPAYEIRAVGNKNRQKFMCEVRVEGFNYAGMGNSTNKKDAQSNAARDFVNYLVRIN   77 (99)
T ss_dssp             TCCCEEEEEEEECSSSEEEEEEEECTTCSCCEEEEESSHHHHHHHHHHHHHHHHHHHT
T ss_pred             CCCCeEEEeeecCCCCCeEEEEEEECCeEEEEEeccCCHHHHHHHHHHHHHHHHHhhC
Confidence            467999987789999999999999999 799999999999999999999999998543

>1t4o_A Ribonuclease III; RNT1P, DSRBD, RNA-binding, hydrolase; 2.50A {Saccharomyces cerevisiae} SCOP: d.50.1.1 PDB: 1t4l_B 2lbs_B

Probab=99.52  E-value=5.8e-15  Score=122.00  Aligned_cols=57  Identities=21%  Similarity=0.087  Sum_probs=51.7

Q ss_pred             CCceEEeeccCCCCCceEEEEEEECCE-EeeCCCCCCHHHHHHHHHHHHHHHHhhhcc
Q 021849            4 AIPLYQCRKDEASGKVQFSCTVEIGDI-RYIGGAAKTKKEAEIKAARTALLAIQSSAS   60 (306)
Q Consensus         4 ~lP~Y~i~ksGPdHdk~FtAeV~IgGk-~yG~G~GrSKKEAEQaAAK~AL~aL~~~s~   60 (306)
                      .+|.|.+..+||+|+++|+|+|+|+|. .+|.|.|+|||+|||+||+.||..|..-..
T Consensus        23 ~~P~Y~vv~~GPdH~k~F~v~V~i~g~~~~g~G~G~SKK~AEQ~AA~~AL~~l~~l~K   80 (117)
T 1t4o_A           23 LRLHYVTVKKPTAVDPNSIVECRVGDGTVLGTGVGRNIKIAGIRAAENALRDKKMLDF   80 (117)
T ss_dssp             GCCEEEEEECCCSSCCCEEEEEECTTCCEEEEEEESSHHHHHHHHHHHHHHCHHHHHH
T ss_pred             CCCEEEEeeeCCCCCCeEEEEEEECCEEEEEEEEeCCHHHHHHHHHHHHHHHHHHHHH
Confidence            579998666799999999999999999 999999999999999999999999875443

>1uil_A Double-stranded RNA-binding motif; structural genomics, DSRM, riken structural genomics/proteomics initiative, RSGI RNA binding protein; NMR {Mus musculus} SCOP: d.50.1.1 PDB: 2rs7_A

Probab=99.52  E-value=1.7e-14  Score=116.45  Aligned_cols=54  Identities=15%  Similarity=0.109  Sum_probs=51.0

Q ss_pred             CceEEeeccCCCCCceEEEEEEE-----CCEEeeCCCCCCHHHHHHHHHHHHHHHHhhh
Q 021849            5 IPLYQCRKDEASGKVQFSCTVEI-----GDIRYIGGAAKTKKEAEIKAARTALLAIQSS   58 (306)
Q Consensus         5 lP~Y~i~ksGPdHdk~FtAeV~I-----gGk~yG~G~GrSKKEAEQaAAK~AL~aL~~~   58 (306)
                      .|.|++..+||+|+++|+|+|+|     +|+.|+.|.|+|||+|||.||+.||..|...
T Consensus        42 ~p~Y~~~~~Gp~H~~~F~~~V~v~~~~~~~~~~~~G~G~SKK~AEq~AA~~AL~~L~~~  100 (113)
T 1uil_A           42 QGEYKYTQVGPDHNRSFIAEMTIYIKQLGRRIFAREHGSNKKLAAQSCALSLVRQLYHL  100 (113)
T ss_dssp             CCCCEEEEESCSTTCEEEEEEEEEETTTTEEEEEECCCSSHHHHHHHHHHHHHHHHHHH
T ss_pred             CCeEEEeeECCCCCCcEEEEEEEeeeccCCEEEEEEeeCCHHHHHHHHHHHHHHHHHhc
Confidence            79999878899999999999999     6899999999999999999999999999854

>2dmy_A Spermatid perinuclear RNA-binding protein; DSRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.50.1.1

Probab=99.52  E-value=1.2e-14  Score=113.96  Aligned_cols=53  Identities=19%  Similarity=0.247  Sum_probs=49.1

Q ss_pred             CCceEEee-ccCCCCCceEEEEEEECCEEeeCCCCCCHHHHHHHHHHHHHHHHhh
Q 021849            4 AIPLYQCR-KDEASGKVQFSCTVEIGDIRYIGGAAKTKKEAEIKAARTALLAIQS   57 (306)
Q Consensus         4 ~lP~Y~i~-ksGPdHdk~FtAeV~IgGk~yG~G~GrSKKEAEQaAAK~AL~aL~~   57 (306)
                      .+|.|++. .+||+|+++|+++|+|+|+.| .|.|+|||+|||.||+.||..|..
T Consensus        30 ~~p~Y~~~~~~Gp~H~~~F~~~v~v~g~~~-~G~G~SKK~Aeq~AA~~aL~~L~~   83 (97)
T 2dmy_A           30 PGLQYKLLSQSGPVHAPVFTMSVDVDGTTY-EASGPSKKTAKLHVAVKVLQAMGY   83 (97)
T ss_dssp             CSCCCEEEEEESCSSSCEEEEEEEETTEEE-EEEESSHHHHHHHHHHHHHHHHTC
T ss_pred             CCceEEEEEeeCCCCCCeEEEEEEECCEEE-EEeeCCHHHHHHHHHHHHHHHhCC
Confidence            57999855 589999999999999999998 999999999999999999999964

>1x48_A Interferon-induced, double-stranded RNA- activated protein kinase; structure genomics, DSRM domain, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.50.1.1

Probab=99.51  E-value=2.2e-14  Score=110.76  Aligned_cols=54  Identities=30%  Similarity=0.388  Sum_probs=50.2

Q ss_pred             ceEEeeccCCCCCc-eEEEEEEECCEEeeCCCCCCHHHHHHHHHHHHHHHHhhhcc
Q 021849            6 PLYQCRKDEASGKV-QFSCTVEIGDIRYIGGAAKTKKEAEIKAARTALLAIQSSAS   60 (306)
Q Consensus         6 P~Y~i~ksGPdHdk-~FtAeV~IgGk~yG~G~GrSKKEAEQaAAK~AL~aL~~~s~   60 (306)
                      |.|+ ..+||+|++ +|+|+|+|+|+.|+.|.|+|||+|||.||+.||..|....+
T Consensus        23 ~~Y~-~~~Gp~H~~~~F~~~v~v~g~~~~~G~G~SKK~Aeq~AA~~AL~~L~~~~~   77 (88)
T 1x48_A           23 VNYE-QCEPNSELPQRFICKCKIGQTMYGTGSGVTKQEAKQLAAKEAYQKLLKSPP   77 (88)
T ss_dssp             EEEE-ECCCSSSSSCCEEEEEEESSCEEEEEEESSHHHHHHHHHHHHHHHHHHSCC
T ss_pred             CeeE-EeeCCCCCCceEEEEEEECCEEEEEeecCCHHHHHHHHHHHHHHHHHhcCC
Confidence            4999 778999999 79999999999999999999999999999999999986644

>2ljh_A Double-stranded RNA-specific editase ADAR; DSRBD, DSRBM, editing, hydrolase; NMR {Drosophila melanogaster}

Probab=99.45  E-value=7.6e-14  Score=113.86  Aligned_cols=52  Identities=29%  Similarity=0.376  Sum_probs=48.4

Q ss_pred             ceEEe-eccCCCCCceEEEEEEECCEEeeCCCCCCHHHHHHHHHHHHHHHHhhh
Q 021849            6 PLYQC-RKDEASGKVQFSCTVEIGDIRYIGGAAKTKKEAEIKAARTALLAIQSS   58 (306)
Q Consensus         6 P~Y~i-~ksGPdHdk~FtAeV~IgGk~yG~G~GrSKKEAEQaAAK~AL~aL~~~   58 (306)
                      |.|++ ..+||+|+++|+++|+|+|+.| .|.|+|||+|||.||+.||..|...
T Consensus        50 p~Y~~v~~~Gp~H~k~F~v~V~v~g~~~-~G~G~SKK~AEq~AA~~AL~~L~~~  102 (114)
T 2ljh_A           50 LIYKLESQTGPVHAPLFTISVEVDGQKY-LGQGRSKKVARIEAAATALRSFIQF  102 (114)
T ss_dssp             CEEEEEEEECCSSSCEEEEEEEETTEEE-EEEESSHHHHHHHHHHHHHHHHCCC
T ss_pred             CeEEEEEeeCCCCCCeEEEEEEECCEEE-EeeeCCHHHHHHHHHHHHHHHHHcC
Confidence            89975 5689999999999999999999 9999999999999999999999743

>1x47_A DGCR8 protein; structural genomics, DSRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.50.1.1

Probab=99.43  E-value=2.4e-13  Score=107.01  Aligned_cols=54  Identities=31%  Similarity=0.430  Sum_probs=49.4

Q ss_pred             CCCceEEe-eccCCCCCceEEEEEEECCEEeeCCCCCCHHHHHHHHHHHHHHHHhhh
Q 021849            3 YAIPLYQC-RKDEASGKVQFSCTVEIGDIRYIGGAAKTKKEAEIKAARTALLAIQSS   58 (306)
Q Consensus         3 L~lP~Y~i-~ksGPdHdk~FtAeV~IgGk~yG~G~GrSKKEAEQaAAK~AL~aL~~~   58 (306)
                      +.+|.|++ ..+||+  ++|+|+|+|+|+.|+.|.|+|||+|||.||+.||..|...
T Consensus        31 ~~~P~Y~~~~~~Gp~--~~F~~~V~v~g~~~~~G~G~SKK~Aeq~AA~~AL~~L~~~   85 (98)
T 1x47_A           31 KVRPVYNFFECENPS--EPFGASVTIDGVTYGSGTASSKKLAKNKAARATLEILIPD   85 (98)
T ss_dssp             CSCCEEEEEECSSSS--CCEEEEEEETTEEEEEEEESSHHHHHHHHHHHHHHHHCSS
T ss_pred             CCCCeEEEEEeECCC--CcEEEEEEECCEEEEEeeeCCHHHHHHHHHHHHHHHHHhh
Confidence            56899985 558998  9999999999999999999999999999999999999744

>1whn_A Hypothetical protein riken cDNA 2310016K04; double-stranded RNA binding domain, DSRBD, DSRM, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.50.1.1

Probab=99.43  E-value=4.6e-13  Score=110.84  Aligned_cols=56  Identities=23%  Similarity=0.258  Sum_probs=50.8

Q ss_pred             CCCCceEEeeccCCCCCceEEEEEEECCEEeeCCCC-CCHHHHHHHHHHHHHHHHhhhc
Q 021849            2 NYAIPLYQCRKDEASGKVQFSCTVEIGDIRYIGGAA-KTKKEAEIKAARTALLAIQSSA   59 (306)
Q Consensus         2 nL~lP~Y~i~ksGPdHdk~FtAeV~IgGk~yG~G~G-rSKKEAEQaAAK~AL~aL~~~s   59 (306)
                      .+.+|.|++...  +|+++|+|+|+|+|+.|+.|.| +|||+|||.||+.||..|....
T Consensus        40 ~~~~P~Y~~v~~--~H~~~F~v~V~v~g~~~g~G~G~~SKK~AEQ~AA~~AL~~L~~~~   96 (128)
T 1whn_A           40 KLPQPVYETVQR--TIDRMFCSVVTVAEQKYQSTLWDKSKKLAEQTAAIVCLRSQGLPE   96 (128)
T ss_dssp             TCCCCCCCEEEC--SSSCCEEEEEEETTEEEEESSCBSSHHHHHHHHHHHHHHHHTCSS
T ss_pred             CCCCCeEEEEee--cCCCcEEEEEEECCEEEEEEeccCCHHHHHHHHHHHHHHHHhccc
Confidence            367899987666  9999999999999999999999 9999999999999999997443

>1qu6_A Protein kinase PKR; dsRNA-binding domain, solution structure, transferase; NMR {Homo sapiens} SCOP: d.50.1.1 d.50.1.1

Probab=99.34  E-value=4.1e-13  Score=113.31  Aligned_cols=53  Identities=25%  Similarity=0.295  Sum_probs=49.4

Q ss_pred             ceEEe-eccCCCCCceEEEEEEECCEEeeCCCCCCHHHHHHHHHHHHHHHHhhh
Q 021849            6 PLYQC-RKDEASGKVQFSCTVEIGDIRYIGGAAKTKKEAEIKAARTALLAIQSS   58 (306)
Q Consensus         6 P~Y~i-~ksGPdHdk~FtAeV~IgGk~yG~G~GrSKKEAEQaAAK~AL~aL~~~   58 (306)
                      |.|++ ..+||+|+++|+++|+|+|+.|+.|.|+|||+|||.||+.||..|...
T Consensus        30 p~Y~~~~~~Gp~h~~~F~~~v~v~g~~~~~G~G~sKK~Aeq~AA~~al~~L~~~   83 (179)
T 1qu6_A           30 LKYQELPNSGPPHDRRFTFQVIIDGREFPEGEGRSKKEAKNAAAKLAVEILNKE   83 (179)
T ss_dssp             CEEEEEESCBTTTBCCEEEEEESSSSCCCEEECCSSHHHHHHHHHHHHHHHHSC
T ss_pred             CeEEEeeccCCCCCCeEEEEEEECCEEEEecCCCCHHHHHHHHHHHHHHHHhcc
Confidence            89975 568999999999999999999999999999999999999999999743

>1o0w_A Ribonuclease III, RNAse III; TM1102, structural genomics, JCSG, PSI, protein structure initiative, joint center for structural genomics; 2.00A {Thermotoga maritima} SCOP: a.149.1.1 d.50.1.1

Probab=99.30  E-value=2.8e-12  Score=113.13  Aligned_cols=56  Identities=30%  Similarity=0.369  Sum_probs=50.3

Q ss_pred             CCCceEEe-eccCCCCCceEEEEEEECCEEeeCCCCCCHHHHHHHHHHHHHHHHhhh
Q 021849            3 YAIPLYQC-RKDEASGKVQFSCTVEIGDIRYIGGAAKTKKEAEIKAARTALLAIQSS   58 (306)
Q Consensus         3 L~lP~Y~i-~ksGPdHdk~FtAeV~IgGk~yG~G~GrSKKEAEQaAAK~AL~aL~~~   58 (306)
                      +..|.|++ ..+||+|++.|+|+|+|+|+.++.|.|+|||+|||.||+.||..|...
T Consensus       194 ~~~p~Y~~~~~~Gp~h~~~F~v~v~v~g~~~~~G~G~SKK~Aeq~AA~~AL~~L~~~  250 (252)
T 1o0w_A          194 KVPPEYILVRTEKNDGDRIFVVEVRVNGKTIATGKGRTKKEAEKEAARIAYEKLLKE  250 (252)
T ss_dssp             SSCCEEEEEEEECCTTSCEEEEEEEETTEEEEEEEESSHHHHHHHHHHHHHHHHC--
T ss_pred             CCCceEEEEeeeCCCCCCeEEEEEEECCEEEEEEeeCCHHHHHHHHHHHHHHHHhhc
Confidence            45799985 558999999999999999999999999999999999999999999643

>2l3j_A Double-stranded RNA-specific editase 1; editing, dsRNA recognition, DSRBM, hydrolase-RNA complex; NMR {Rattus norvegicus}

Probab=99.28  E-value=3e-12  Score=113.03  Aligned_cols=54  Identities=24%  Similarity=0.258  Sum_probs=49.4

Q ss_pred             CCceEEe-eccCCCCCceEEEEEEECCEEeeCCCCCCHHHHHHHHHHHHHHHHhhh
Q 021849            4 AIPLYQC-RKDEASGKVQFSCTVEIGDIRYIGGAAKTKKEAEIKAARTALLAIQSS   58 (306)
Q Consensus         4 ~lP~Y~i-~ksGPdHdk~FtAeV~IgGk~yG~G~GrSKKEAEQaAAK~AL~aL~~~   58 (306)
                      ..|.|++ ..+||+|+++|+|+|+|+|+.| .|.|+|||+|||.||+.||..|...
T Consensus        18 ~~p~Y~~~~~~Gp~H~~~F~~~v~v~g~~~-~G~G~SKK~Aeq~AA~~al~~l~~~   72 (236)
T 2l3j_A           18 PGLQYMLLSQTGPVHAPLFVMSVEVNGQVF-EGSGPTKKKAKLHAAEKALRSFVQF   72 (236)
T ss_dssp             SSCEEEEEEEESCTTSCEEEEEEEETTEEE-EEEESHHHHHHHHHHHHHHHHHTTC
T ss_pred             CCceEEEEeccCCCCCCeEEEEEEECCEEE-EEecCChHHHHHHHHHHHHHHHHhc
Confidence            5799985 5589999999999999999996 9999999999999999999999754

>2l3j_A Double-stranded RNA-specific editase 1; editing, dsRNA recognition, DSRBM, hydrolase-RNA complex; NMR {Rattus norvegicus}

Probab=99.27  E-value=4.3e-12  Score=112.02  Aligned_cols=53  Identities=23%  Similarity=0.285  Sum_probs=48.7

Q ss_pred             CCceEEe-eccCCCCCceEEEEEEECCEEeeCCCCCCHHHHHHHHHHHHHHHHhh
Q 021849            4 AIPLYQC-RKDEASGKVQFSCTVEIGDIRYIGGAAKTKKEAEIKAARTALLAIQS   57 (306)
Q Consensus         4 ~lP~Y~i-~ksGPdHdk~FtAeV~IgGk~yG~G~GrSKKEAEQaAAK~AL~aL~~   57 (306)
                      .+|.|++ ..+||+|+++|+++|+|+|+.+ .|.|+|||+|||.||+.||..|..
T Consensus       172 ~~p~Y~~~~~~Gp~h~~~F~~~v~v~~~~~-~G~G~sKK~Aeq~AA~~al~~L~~  225 (236)
T 2l3j_A          172 PGLKYDFLSESGESHAKSFVMSVVVDGQFF-EGSGRNKKLAKARAAQSALATVFN  225 (236)
T ss_dssp             CCEEEEEECCSSSSSSCCEEEEEEETTEEE-EEEESSHHHHHHHHHHHHHHHHTT
T ss_pred             CCCcEEEEEeeCCCCCCeEEEEEEECCEEE-EeeeCCHHHHHHHHHHHHHHHHcc
Confidence            5799985 5589999999999999999987 999999999999999999999964

>2a11_A Ribonuclease III, RNAse III; nuclease domain, structural genomic protein structure initiative; 2.10A {Mycobacterium tuberculosis}

Probab=99.19  E-value=1.7e-12  Score=113.24  Aligned_cols=57  Identities=30%  Similarity=0.376  Sum_probs=0.0

Q ss_pred             CCCceEEeeccCCCCCceEEEEEEECCEEeeCCCCCCHHHHHHHHHHHHHHHHhhhc
Q 021849            3 YAIPLYQCRKDEASGKVQFSCTVEIGDIRYIGGAAKTKKEAEIKAARTALLAIQSSA   59 (306)
Q Consensus         3 L~lP~Y~i~ksGPdHdk~FtAeV~IgGk~yG~G~GrSKKEAEQaAAK~AL~aL~~~s   59 (306)
                      +..|.|++..+||+|+++|+|+|+|+|+.++.|.|+|||+|||.||+.||..|....
T Consensus       177 ~~~p~Y~~~~~Gp~h~~~F~v~v~v~g~~~~~G~G~skk~Ae~~AA~~AL~~L~~~~  233 (242)
T 2a11_A          177 LGAPSYLVTSTGPDHDKEFTAVVVVMDSEYGSGVGRSKKEAEQKAAAAAWKALEVLD  233 (242)
T ss_dssp             ---------------------------------------------------------
T ss_pred             CCCCeEEEeccCCCCCCeEEEEEEECCEEEEEeeeCCHHHHHHHHHHHHHHHHhhcc
Confidence            357999876699999999999999999999999999999999999999999997543

>2yt4_A Protein DGCR8; DSRBD, RNA binding domain, RNA binding protein; 2.60A {Homo sapiens}

Probab=99.13  E-value=5.6e-11  Score=105.03  Aligned_cols=54  Identities=31%  Similarity=0.430  Sum_probs=49.3

Q ss_pred             CCCceEEe-eccCCCCCceEEEEEEECCEEeeCCCCCCHHHHHHHHHHHHHHHHhhh
Q 021849            3 YAIPLYQC-RKDEASGKVQFSCTVEIGDIRYIGGAAKTKKEAEIKAARTALLAIQSS   58 (306)
Q Consensus         3 L~lP~Y~i-~ksGPdHdk~FtAeV~IgGk~yG~G~GrSKKEAEQaAAK~AL~aL~~~   58 (306)
                      +.+|.|.+ ..+||+  ++|+|+|+|+|+.|+.|.|+|||+|||.||+.||..|...
T Consensus        37 ~~~p~Y~~~~~~Gp~--~~F~~~v~v~g~~~~~G~G~SKK~Aeq~AA~~aL~~L~~~   91 (232)
T 2yt4_A           37 KVRPVYNFFECENPS--EPFGASVTIDGVTYGSGTASSKKLAKNKAARATLEILIPD   91 (232)
T ss_dssp             CCCCEEEEEECSCTT--SCEEEEEEETTEEEEEEEESSHHHHHHHHHHHHHHHHSTT
T ss_pred             CCCCeEEEEeeECCC--CcEEEEEEECCEEEeecCCCCHHHHHHHHHHHHHHHHHhh
Confidence            56899985 568998  9999999999999999999999999999999999999654

>1qu6_A Protein kinase PKR; dsRNA-binding domain, solution structure, transferase; NMR {Homo sapiens} SCOP: d.50.1.1 d.50.1.1

Probab=99.06  E-value=7.1e-11  Score=99.67  Aligned_cols=55  Identities=29%  Similarity=0.345  Sum_probs=50.9

Q ss_pred             ceEEeeccCCCCCceEEEEEEECCEEeeCCCCCCHHHHHHHHHHHHHHHHhhhcc
Q 021849            6 PLYQCRKDEASGKVQFSCTVEIGDIRYIGGAAKTKKEAEIKAARTALLAIQSSAS   60 (306)
Q Consensus         6 P~Y~i~ksGPdHdk~FtAeV~IgGk~yG~G~GrSKKEAEQaAAK~AL~aL~~~s~   60 (306)
                      +.|.+..+||+|.+.|+++|.|+|+.|+.|.|+|||+|++.||+.||..|.....
T Consensus       121 ~~Y~~~~~G~~h~~~F~~~v~v~~~~~~~g~g~sKK~Ak~~AA~~al~~L~~~~~  175 (179)
T 1qu6_A          121 VNYEQCASGVHGPEGFHYKCKMGQKEYSIGTGSTKQEAKQLAAKLAYLQILSEET  175 (179)
T ss_dssp             EEEEEEEECSSSSSEEEEEEEEETTBCCEEEESSHHHHHHHHHHHHHHHHHHCCC
T ss_pred             ceEEecCcCCCCCCeEEEEEEECCEEEeeEEECCHHHHHHHHHHHHHHHHhcccC
Confidence            4898888899999999999999999999999999999999999999999976544

>2yt4_A Protein DGCR8; DSRBD, RNA binding domain, RNA binding protein; 2.60A {Homo sapiens}

Probab=98.95  E-value=2.8e-10  Score=100.57  Aligned_cols=54  Identities=13%  Similarity=0.110  Sum_probs=43.1

Q ss_pred             CCCCceEE--ee-ccCCCCCceEEEEEEECCEEeeCCCCCCHHHHHHHHHHHHHHHHhhh
Q 021849            2 NYAIPLYQ--CR-KDEASGKVQFSCTVEIGDIRYIGGAAKTKKEAEIKAARTALLAIQSS   58 (306)
Q Consensus         2 nL~lP~Y~--i~-ksGPdHdk~FtAeV~IgGk~yG~G~GrSKKEAEQaAAK~AL~aL~~~   58 (306)
                      ++.+|.|.  +. .+||+|++.|+++|.   ..++.|.|+|||+|||.||+.||..|...
T Consensus       143 ~~~~p~Y~~~~~~~~Gp~h~~~F~~~v~---~~~~~G~G~sKK~Aeq~AA~~aL~~L~~~  199 (232)
T 2yt4_A          143 NHGMGDTSIKFEVVPGKNQKSEYVMACG---KHTVRGWCKNKRVGKQLASQKILQLLHPH  199 (232)
T ss_dssp             SSSCCCEEEECC------CCEEEEEEET---TEEEEEEESSHHHHHHHHHHHHHHHHSTT
T ss_pred             CCCCCceEEEEeecCCCCCCCEEEEEEE---EEEEEEEeCCHHHHHHHHHHHHHHHHHhh
Confidence            46789998  44 479999999998876   66899999999999999999999999754

>3rv0_A K. polysporus DCR1; RNAse III enzyme, RNA binding protein; 2.29A {Vanderwaltozyma polyspora}

Probab=98.48  E-value=1.6e-08  Score=94.54  Aligned_cols=48  Identities=27%  Similarity=0.237  Sum_probs=0.0

Q ss_pred             ceEEee-ccCCCCCceEEEEEEECCEEeeCCCCCCHHHHHHHHHHHHHHHHhhh
Q 021849            6 PLYQCR-KDEASGKVQFSCTVEIGDIRYIGGAAKTKKEAEIKAARTALLAIQSS   58 (306)
Q Consensus         6 P~Y~i~-ksGPdHdk~FtAeV~IgGk~yG~G~GrSKKEAEQaAAK~AL~aL~~~   58 (306)
                      |.|++. .+||     |+|.|+|+|+.+|.|+|+|||+|||.||+.||..|...
T Consensus       273 ~~Y~~~~~~Gp-----F~v~v~i~~~~~g~G~G~SKK~AEq~AA~~AL~~L~~~  321 (341)
T 3rv0_A          273 LHYRKLTEMPP-----FRVEVKIGDILLDEAEGNSIREAEHRAAMKVLENDELL  321 (341)
T ss_dssp             ------------------------------------------------------
T ss_pred             ceEEEEeccCC-----EEEEEEECCEEEEEEEeCCHHHHHHHHHHHHHHHhhhh
Confidence            589754 4676     99999999999999999999999999999999999854

>3htx_A HEN1; HEN1, small RNA methyltransferase, protein-RNA complex; HET: SAH; 3.10A {Arabidopsis thaliana}

Probab=91.55  E-value=0.13  Score=54.58  Aligned_cols=39  Identities=23%  Similarity=0.380  Sum_probs=36.0

Q ss_pred             eEEEEEEECCEEeeCCCCCCHHHHHHHHHHHHHHHHhhh
Q 021849           20 QFSCTVEIGDIRYIGGAAKTKKEAEIKAARTALLAIQSS   58 (306)
Q Consensus        20 ~FtAeV~IgGk~yG~G~GrSKKEAEQaAAK~AL~aL~~~   58 (306)
                      .|.|.+.+-+-..-.+.-+-||+|||.||+.||.+|...
T Consensus        58 ~~~c~~~lp~~~~~~~~~~~kkd~eq~aa~~al~~~g~~   96 (950)
T 3htx_A           58 LYRCHLQLPEFSVVSNVFKKKKDSEQSAAELALDKLGIR   96 (950)
T ss_dssp             EEEEEEECSSCEEECCCBSCHHHHHHHHHHHHHTTTTST
T ss_pred             eEEEEeeCCCceEecchhhccccHHHHHHHHHHHHhCCC
Confidence            999999999987778999999999999999999998753

>2kou_A Dicer-like protein 4; ATP-binding, endonuclease, helicase, hydrolase, nuclease, nucleotide-binding, nucleus, RNA- binding; NMR {Arabidopsis thaliana}

Probab=86.32  E-value=0.95  Score=35.71  Aligned_cols=54  Identities=11%  Similarity=0.099  Sum_probs=40.1

Q ss_pred             CCceEEeeccCCCCCceEEEEEEECC-----EEeeCCCCCCHHHHHHHHHHHHHHHHhhhcc
Q 021849            4 AIPLYQCRKDEASGKVQFSCTVEIGD-----IRYIGGAAKTKKEAEIKAARTALLAIQSSAS   60 (306)
Q Consensus         4 ~lP~Y~i~ksGPdHdk~FtAeV~IgG-----k~yG~G~GrSKKEAEQaAAK~AL~aL~~~s~   60 (306)
                      ..|.|.+...... +..| |+|.+-.     ...|.-+ +|||.|.+.||=.|+..|.....
T Consensus        25 ~~P~~~~~~~~~~-~~~~-c~v~LP~~splr~i~g~~~-~sk~~AK~sAAf~Ac~~L~~~G~   83 (102)
T 2kou_A           25 PKPEFQFKPVDEF-GGTI-CRITLPANAPISEIESSLL-PSTEAAKKDACLKAVHELHNLGV   83 (102)
T ss_dssp             SSCEEEEEECCGG-GCEE-EEEECCTTCSSCCEEEEEE-SSHHHHHHHHHHHHHHHHHHHCS
T ss_pred             ccceEEEeEeecC-CCeE-EEEECCCCCCCCeeeCCcc-ccHHHHHHHHHHHHHHHHHHCCC
Confidence            4689985543221 2367 9998876     4556666 99999999999999999987654

>2db2_A KIAA0890 protein; DSRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=80.43  E-value=0.95  Score=37.92  Aligned_cols=41  Identities=17%  Similarity=0.114  Sum_probs=32.5

Q ss_pred             ceEEEEEEECCEEeeCCCCCCHHHHHHHHHHHHHHHHhhhc
Q 021849           19 VQFSCTVEIGDIRYIGGAAKTKKEAEIKAARTALLAIQSSA   59 (306)
Q Consensus        19 k~FtAeV~IgGk~yG~G~GrSKKEAEQaAAK~AL~aL~~~s   59 (306)
                      +.-+.++.+--..--.|.|+.|-|||.+||..|+..|+.-.
T Consensus        51 K~~tl~l~WP~~mef~a~G~rK~eAE~kAAA~AC~kLK~Lg   91 (119)
T 2db2_A           51 KKVTLHIKWPKSVEVEGYGSKKIDAERQAAAAACQLFKGWG   91 (119)
T ss_dssp             EEEEEEECSSSCEEEEEEESSHHHHHHHHHHHHHHHHHHHT
T ss_pred             eEEEEEecCCCcEEEEeeccchHHHHHHHHHHHHHHHHHcC
Confidence            34455555566667789999999999999999999998553

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	306
d1x48a1	76	d.50.1.1 (A:8-83) dsRNA-dependent protein kinase p	2e-06
d1o0wa2	69	d.50.1.1 (A:168-236) RNase III, C-terminal domain	6e-06
d1x47a1	85	d.50.1.1 (A:8-92) Dgcr8 protein {Human (Homo sapie	3e-05
d2nuga2	68	d.50.1.1 (A:151-218) RNase III, C-terminal domain	1e-04
d2dmya1	84	d.50.1.1 (A:8-91) Spermatid perinuclear RNA-bindin	0.001
d2b7va1	71	d.50.1.1 (A:1-71) dsRNA-specific editase 1 {Rat (R	0.002
d1di2a_	69	d.50.1.1 (A:) Double-stranded RNA-binding protein	0.002
d1qu6a2	89	d.50.1.1 (A:91-179) dsRNA-dependent protein kinase	0.004

>d1x48a1 d.50.1.1 (A:8-83) dsRNA-dependent protein kinase pkr {Mouse (Mus musculus) [TaxId: 10090]} Length = 76

class: Alpha and beta proteins (a+b)
fold: dsRBD-like
superfamily: dsRNA-binding domain-like
family: Double-stranded RNA-binding domain (dsRBD)
domain: dsRNA-dependent protein kinase pkr
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 43.1 bits (101), Expect = 2e-06
 Identities = 16/63 (25%), Positives = 30/63 (47%), Gaps = 1/63 (1%)

Query: 5  IPLYQCRKDE-ASGKVQFSCTVEIGDIRYIGGAAKTKKEAEIKAARTALLAIQSSASELS 63
          + +   + +  +    +F C  +IG   Y  G+  TK+EA+  AA+ A   +  S  + +
Sbjct: 14 LSVNYEQCEPNSELPQRFICKCKIGQTMYGTGSGVTKQEAKQLAAKEAYQKLLKSPPKTA 73

Query: 64 GNS 66
          G S
Sbjct: 74 GTS 76

>d1o0wa2 d.50.1.1 (A:168-236) RNase III, C-terminal domain {Thermotoga maritima [TaxId: 2336]} Length = 69

class: Alpha and beta proteins (a+b)
fold: dsRBD-like
superfamily: dsRNA-binding domain-like
family: Double-stranded RNA-binding domain (dsRBD)
domain: RNase III, C-terminal domain
species: Thermotoga maritima [TaxId: 2336]

 Score = 41.0 bits (96), Expect = 6e-06
 Identities = 17/52 (32%), Positives = 22/52 (42%), Gaps = 1/52 (1%)

Query: 5  IPLYQCRKDE-ASGKVQFSCTVEIGDIRYIGGAAKTKKEAEIKAARTALLAI 55
           P Y   + E   G   F   V +       G  +TKKEAE +AAR A   +
Sbjct: 17 PPEYILVRTEKNDGDRIFVVEVRVNGKTIATGKGRTKKEAEKEAARIAYEKL 68

>d1x47a1 d.50.1.1 (A:8-92) Dgcr8 protein {Human (Homo sapiens) [TaxId: 9606]} Length = 85

class: Alpha and beta proteins (a+b)
fold: dsRBD-like
superfamily: dsRNA-binding domain-like
family: Double-stranded RNA-binding domain (dsRBD)
domain: Dgcr8 protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.6 bits (92), Expect = 3e-05
 Identities = 14/60 (23%), Positives = 23/60 (38%)

Query: 2  NYAIPLYQCRKDEASGKVQFSCTVEIGDIRYIGGAAKTKKEAEIKAARTALLAIQSSASE 61
             +       +  +    F  +V I  + Y  G A +KK A+ KAAR  L  +     +
Sbjct: 22 VLKVRPVYNFFECENPSEPFGASVTIDGVTYGSGTASSKKLAKNKAARATLEILIPDFVK 81

>d2nuga2 d.50.1.1 (A:151-218) RNase III, C-terminal domain {Aquifex aeolicus [TaxId: 63363]} Length = 68

class: Alpha and beta proteins (a+b)
fold: dsRBD-like
superfamily: dsRNA-binding domain-like
family: Double-stranded RNA-binding domain (dsRBD)
domain: RNase III, C-terminal domain
species: Aquifex aeolicus [TaxId: 63363]

 Score = 37.3 bits (86), Expect = 1e-04
 Identities = 15/53 (28%), Positives = 26/53 (49%), Gaps = 2/53 (3%)

Query: 5  IPLYQC-RKDEASGKVQFSCTVEIGDIRYIGGAAKTKKEAEIKAARTALLAIQ 56
           P Y+    +    K +F    +I + R +G   K+KKEAE +AA   +  ++
Sbjct: 17 RPEYRLISVEGPHHKKKFIVEAKIKEYRTLG-EGKSKKEAEQRAAEELIKLLE 68

>d2dmya1 d.50.1.1 (A:8-91) Spermatid perinuclear RNA-binding protein {Human (Homo sapiens) [TaxId: 9606]} Length = 84

class: Alpha and beta proteins (a+b)
fold: dsRBD-like
superfamily: dsRNA-binding domain-like
family: Double-stranded RNA-binding domain (dsRBD)
domain: Spermatid perinuclear RNA-binding protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 34.8 bits (80), Expect = 0.001
 Identities = 9/41 (21%), Positives = 17/41 (41%), Gaps = 1/41 (2%)

Query: 20 QFSCTVEIGDIRYIGGAAKTKKEAEIKAARTALLAIQSSAS 60
           F+ +V++    Y      +KK A++  A   L A+     
Sbjct: 40 VFTMSVDVDGTTYEASG-PSKKTAKLHVAVKVLQAMGYPTG 79

>d2b7va1 d.50.1.1 (A:1-71) dsRNA-specific editase 1 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 71

class: Alpha and beta proteins (a+b)
fold: dsRBD-like
superfamily: dsRNA-binding domain-like
family: Double-stranded RNA-binding domain (dsRBD)
domain: dsRNA-specific editase 1
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 34.0 bits (78), Expect = 0.002
 Identities = 10/36 (27%), Positives = 20/36 (55%), Gaps = 1/36 (2%)

Query: 20 QFSCTVEIGDIRYIGGAAKTKKEAEIKAARTALLAI 55
           F  +V +    + G + + KK A+ +AA++AL  +
Sbjct: 32 SFVMSVVVDGQFFEG-SGRNKKLAKARAAQSALATV 66

>d1di2a_ d.50.1.1 (A:) Double-stranded RNA-binding protein A, second dsRBD {Xenopus laevis [TaxId: 8355]} Length = 69

class: Alpha and beta proteins (a+b)
fold: dsRBD-like
superfamily: dsRNA-binding domain-like
family: Double-stranded RNA-binding domain (dsRBD)
domain: Double-stranded RNA-binding protein A, second dsRBD
species: Xenopus laevis [TaxId: 8355]

 Score = 33.9 bits (77), Expect = 0.002
 Identities = 8/57 (14%), Positives = 20/57 (35%)

Query: 1  MNYAIPLYQCRKDEASGKVQFSCTVEIGDIRYIGGAAKTKKEAEIKAARTALLAIQS 57
            + +P Y   ++      +        +     G+  +K+ A+  AA   L   ++
Sbjct: 13 KGWRLPEYTVAQESGPPHKREFTITCRVETFVETGSGTSKQVAKRVAAEKLLTKFKT 69

>d1qu6a2 d.50.1.1 (A:91-179) dsRNA-dependent protein kinase pkr {Human (Homo sapiens) [TaxId: 9606]} Length = 89

class: Alpha and beta proteins (a+b)
fold: dsRBD-like
superfamily: dsRNA-binding domain-like
family: Double-stranded RNA-binding domain (dsRBD)
domain: dsRNA-dependent protein kinase pkr
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 33.6 bits (76), Expect = 0.004
 Identities = 16/60 (26%), Positives = 23/60 (38%)

Query: 1  MNYAIPLYQCRKDEASGKVQFSCTVEIGDIRYIGGAAKTKKEAEIKAARTALLAIQSSAS 60
                 Y+       G   F    ++G   Y  G   TK+EA+  AA+ A L I S  +
Sbjct: 26 KKRLTVNYEQCASGVHGPEGFHYKCKMGQKEYSIGTGSTKQEAKQLAAKLAYLQILSEET 85

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	306
d1o0wa2	69	RNase III, C-terminal domain {Thermotoga maritima	99.59
d1x48a1	76	dsRNA-dependent protein kinase pkr {Mouse (Mus mus	99.59
d2dixa1	73	Interferon-inducible double stranded RNA-dependent	99.53
d1di2a_	69	Double-stranded RNA-binding protein A, second dsRB	99.51
d1x49a1	85	dsRNA-dependent protein kinase pkr {Mouse (Mus mus	99.49
d1qu6a1	90	dsRNA-dependent protein kinase pkr {Human (Homo sa	99.48
d2nuga2	68	RNase III, C-terminal domain {Aquifex aeolicus [Ta	99.46
d2dmya1	84	Spermatid perinuclear RNA-binding protein {Human (	99.46
d2b7ta1	73	dsRNA-specific editase 1 {Rat (Rattus norvegicus)	99.44
d1qu6a2	89	dsRNA-dependent protein kinase pkr {Human (Homo sa	99.44
d2cpna1	76	TAR RNA-binding protein 2 {Human (Homo sapiens) [T	99.42
d1whqa_	99	ATP-dependent RNA helicase A, Dhx9 {Mouse (Mus mus	99.42
d1uila_	113	ATP-dependent RNA helicase A, Dhx9 {Mouse (Mus mus	99.39
d2b7va1	71	dsRNA-specific editase 1 {Rat (Rattus norvegicus)	99.39
d1uhza_	89	staufen homolog 2 {Mouse (Mus musculus) [TaxId: 10	99.39
d1x47a1	85	Dgcr8 protein {Human (Homo sapiens) [TaxId: 9606]}	99.33
d1ekza_	76	Staufen, domain III {Fruit fly (Drosophila melanog	99.32
d1whna_	128	tRNA-dihydrouridine synthase 2-like, Dus2l (231001	99.23
d1t4oa_	81	RNase III, C-terminal domain {Baker's yeast (Sacch	99.16

>d1o0wa2 d.50.1.1 (A:168-236) RNase III, C-terminal domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a+b)
fold: dsRBD-like
superfamily: dsRNA-binding domain-like
family: Double-stranded RNA-binding domain (dsRBD)
domain: RNase III, C-terminal domain
species: Thermotoga maritima [TaxId: 2336]

Probab=99.59  E-value=8.3e-16  Score=110.36  Aligned_cols=53  Identities=32%  Similarity=0.397  Sum_probs=49.6

Q ss_pred             CCCceEEe-eccCCCCCceEEEEEEECCEEeeCCCCCCHHHHHHHHHHHHHHHH
Q 021849            3 YAIPLYQC-RKDEASGKVQFSCTVEIGDIRYIGGAAKTKKEAEIKAARTALLAI   55 (306)
Q Consensus         3 L~lP~Y~i-~ksGPdHdk~FtAeV~IgGk~yG~G~GrSKKEAEQaAAK~AL~aL   55 (306)
                      +.+|.|.+ ..+||+|++.|++.|.|+|+.++.|.|+|||+|||.||+.||..|
T Consensus        15 ~~~P~Y~~~~~~g~~h~~~F~~~v~v~~~~~~~g~g~sKK~Aeq~AA~~aL~~L   68 (69)
T d1o0wa2          15 KVPPEYILVRTEKNDGDRIFVVEVRVNGKTIATGKGRTKKEAEKEAARIAYEKL   68 (69)
T ss_dssp             SSCCEEEEEEEECCTTSCEEEEEEEETTEEEEEEEESSHHHHHHHHHHHHHHHH
T ss_pred             CCCCEEEEEEeeCCCCCceEEEEEEECCEEEEEEEeCCHHHHHHHHHHHHHHHh
Confidence            57899975 557999999999999999999999999999999999999999987

>d1x48a1 d.50.1.1 (A:8-83) dsRNA-dependent protein kinase pkr {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: dsRBD-like
superfamily: dsRNA-binding domain-like
family: Double-stranded RNA-binding domain (dsRBD)
domain: dsRNA-dependent protein kinase pkr
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.59  E-value=8.2e-16  Score=114.43  Aligned_cols=58  Identities=26%  Similarity=0.330  Sum_probs=52.7

Q ss_pred             ceEEeeccCCCCCceEEEEEEECCEEeeCCCCCCHHHHHHHHHHHHHHHHhhhccccc
Q 021849            6 PLYQCRKDEASGKVQFSCTVEIGDIRYIGGAAKTKKEAEIKAARTALLAIQSSASELS   63 (306)
Q Consensus         6 P~Y~i~ksGPdHdk~FtAeV~IgGk~yG~G~GrSKKEAEQaAAK~AL~aL~~~s~e~~   63 (306)
                      +.|.+..+||+|++.|+++|.|+|+.|+.|.|+|||+|||.||+.||..|....+++.
T Consensus        16 ~~~~~~~~G~~h~~~F~~~v~v~~~~~~~g~G~sKK~Aeq~AA~~Al~~L~~~~~~~~   73 (76)
T d1x48a1          16 VNYEQCEPNSELPQRFICKCKIGQTMYGTGSGVTKQEAKQLAAKEAYQKLLKSPPKTA   73 (76)
T ss_dssp             EEEEECCCSSSSSCCEEEEEEESSCEEEEEEESSHHHHHHHHHHHHHHHHHHSCCCCC
T ss_pred             CccccCCcCCCCCCcEEEEEEECCEEeCCcCccHHHHHHHHHHHHHHHHHHccCCCCc
Confidence            3567778899999999999999999999999999999999999999999998877543

>d2dixa1 d.50.1.1 (A:7-79) Interferon-inducible double stranded RNA-dependent protein kinase activator A {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: dsRBD-like
superfamily: dsRNA-binding domain-like
family: Double-stranded RNA-binding domain (dsRBD)
domain: Interferon-inducible double stranded RNA-dependent protein kinase activator A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.53  E-value=8.1e-15  Score=107.04  Aligned_cols=55  Identities=35%  Similarity=0.559  Sum_probs=50.0

Q ss_pred             CCceEEe-eccCCCCCceEEEEEEECCEEeeCCCCCCHHHHHHHHHHHHHHHHhhhc
Q 021849            4 AIPLYQC-RKDEASGKVQFSCTVEIGDIRYIGGAAKTKKEAEIKAARTALLAIQSSA   59 (306)
Q Consensus         4 ~lP~Y~i-~ksGPdHdk~FtAeV~IgGk~yG~G~GrSKKEAEQaAAK~AL~aL~~~s   59 (306)
                      ..|.|.+ ..+||+|++.|+++|.|+++ ++.|.|+|||+||+.||+.||..|+...
T Consensus        17 ~~p~y~~~~~~Gp~h~~~F~~~v~v~~~-~~~g~g~sKK~Aeq~AA~~al~~L~~~~   72 (73)
T d2dixa1          17 NIPVYECERSDVQIHVPTFTFRVTVGDI-TCTGEGTSKKLAKHRAAEAAINILKANA   72 (73)
T ss_dssp             CCCEEEEEEEECSSSSCEEEEEEEETTE-EEEECSSCTTHHHHHHHHHHHHHHHHTC
T ss_pred             CCCEEEEeeeeCCCCCcEEEEEEEEEEE-EEEeccccHHHHHHHHHHHHHHHHHhcC
Confidence            4799975 56899999999999999987 8899999999999999999999998654

>d1di2a_ d.50.1.1 (A:) Double-stranded RNA-binding protein A, second dsRBD {Xenopus laevis [TaxId: 8355]}

class: Alpha and beta proteins (a+b)
fold: dsRBD-like
superfamily: dsRNA-binding domain-like
family: Double-stranded RNA-binding domain (dsRBD)
domain: Double-stranded RNA-binding protein A, second dsRBD
species: Xenopus laevis [TaxId: 8355]

Probab=99.51  E-value=5.9e-15  Score=107.00  Aligned_cols=54  Identities=20%  Similarity=0.327  Sum_probs=49.3

Q ss_pred             CCCCceEEe-eccCCCCCceEEEEEEECCEEeeCCCCCCHHHHHHHHHHHHHHHHh
Q 021849            2 NYAIPLYQC-RKDEASGKVQFSCTVEIGDIRYIGGAAKTKKEAEIKAARTALLAIQ   56 (306)
Q Consensus         2 nL~lP~Y~i-~ksGPdHdk~FtAeV~IgGk~yG~G~GrSKKEAEQaAAK~AL~aL~   56 (306)
                      .+.+|.|.+ ..+||+|++.|+++|.|++..+ .|.|+|||+|||.||+.||..|+
T Consensus        14 ~~~~P~Y~~~~~~G~~h~~~F~~~v~v~~~~~-~g~g~sKK~Aeq~AA~~aL~~L~   68 (69)
T d1di2a_          14 GWRLPEYTVAQESGPPHKREFTITCRVETFVE-TGSGTSKQVAKRVAAEKLLTKFK   68 (69)
T ss_dssp             TCCCCEEEEEEEESCGGGCEEEEEEEETTEEE-EEEESSHHHHHHHHHHHHHHHHH
T ss_pred             CCCCCeEEEEEeeCCCCCcceEEEEEEeeEEE-ecCcCcHHHHHHHHHHHHHHHhc
Confidence            578999975 5579999999999999999875 89999999999999999999986

>d1x49a1 d.50.1.1 (A:8-92) dsRNA-dependent protein kinase pkr {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: dsRBD-like
superfamily: dsRNA-binding domain-like
family: Double-stranded RNA-binding domain (dsRBD)
domain: dsRNA-dependent protein kinase pkr
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.49  E-value=1.2e-14  Score=109.41  Aligned_cols=56  Identities=18%  Similarity=0.240  Sum_probs=51.5

Q ss_pred             CceEE-eeccCCCCCceEEEEEEECCEEeeCCCCCCHHHHHHHHHHHHHHHHhhhcc
Q 021849            5 IPLYQ-CRKDEASGKVQFSCTVEIGDIRYIGGAAKTKKEAEIKAARTALLAIQSSAS   60 (306)
Q Consensus         5 lP~Y~-i~ksGPdHdk~FtAeV~IgGk~yG~G~GrSKKEAEQaAAK~AL~aL~~~s~   60 (306)
                      .|.|. +..+||+|++.|+|.|+|+|+.|+.|.|+|||+||+.||+.||..|.....
T Consensus        23 ~~~y~~~~~~Gp~h~~~F~~~v~v~g~~~~~g~g~sKK~Aeq~AA~~aL~~L~~~~~   79 (85)
T d1x49a1          23 AITYKELSTSGPPHDRRFTFQVLIDEKEFPEAKGRSKQEARNAAAKLAVDILDNENK   79 (85)
T ss_dssp             CEEEEEEEEESCSSSCEEEEEEEESSCCCCCEEESSHHHHHHHHHHHHHHHHTTTCC
T ss_pred             CCeEEEEEecCCCCCceEEEEEecCceEeeccccccHHHHHHHHHHHHHHHHHHcCc
Confidence            58997 556899999999999999999999999999999999999999999987644

>d1qu6a1 d.50.1.1 (A:1-90) dsRNA-dependent protein kinase pkr {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: dsRBD-like
superfamily: dsRNA-binding domain-like
family: Double-stranded RNA-binding domain (dsRBD)
domain: dsRNA-dependent protein kinase pkr
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.48  E-value=7.2e-15  Score=111.90  Aligned_cols=57  Identities=23%  Similarity=0.300  Sum_probs=52.3

Q ss_pred             CCceEE-eeccCCCCCceEEEEEEECCEEeeCCCCCCHHHHHHHHHHHHHHHHhhhcc
Q 021849            4 AIPLYQ-CRKDEASGKVQFSCTVEIGDIRYIGGAAKTKKEAEIKAARTALLAIQSSAS   60 (306)
Q Consensus         4 ~lP~Y~-i~ksGPdHdk~FtAeV~IgGk~yG~G~GrSKKEAEQaAAK~AL~aL~~~s~   60 (306)
                      .+|.|. +..+||+|++.|+|.|+|+|+.|+.|.|+|||+||+.||+.||..|.....
T Consensus        28 ~~p~y~~~~~~Gp~h~~~F~v~v~v~~~~~~~g~G~sKK~Aeq~AA~~aL~~L~~~~~   85 (90)
T d1qu6a1          28 VVLKYQELPNSGPPHDRRFTFQVIIDGREFPEGEGRSKKEAKNAAAKLAVEILNKEKK   85 (90)
T ss_dssp             CCCEEEEEESCBTTTBCCEEEEEESSSSCCCEEECCSSHHHHHHHHHHHHHHHHSCCS
T ss_pred             CCCcEEEEEeeCCCCCceEEEEEEECceeeeccCCCcHHHHHHHHHHHHHHHHHhhCC
Confidence            379996 567899999999999999999999999999999999999999999986654

>d2nuga2 d.50.1.1 (A:151-218) RNase III, C-terminal domain {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a+b)
fold: dsRBD-like
superfamily: dsRNA-binding domain-like
family: Double-stranded RNA-binding domain (dsRBD)
domain: RNase III, C-terminal domain
species: Aquifex aeolicus [TaxId: 63363]

Probab=99.46  E-value=2.7e-14  Score=102.77  Aligned_cols=53  Identities=26%  Similarity=0.323  Sum_probs=48.5

Q ss_pred             CCCceEE-eeccCCCCCceEEEEEEECCEEeeCCCCCCHHHHHHHHHHHHHHHHh
Q 021849            3 YAIPLYQ-CRKDEASGKVQFSCTVEIGDIRYIGGAAKTKKEAEIKAARTALLAIQ   56 (306)
Q Consensus         3 L~lP~Y~-i~ksGPdHdk~FtAeV~IgGk~yG~G~GrSKKEAEQaAAK~AL~aL~   56 (306)
                      +.+|.|. +..+||+|++.|+++|.|++. .+.|.|+|||+|||.||+.||..|+
T Consensus        15 ~~~P~Y~~~~~~g~~h~~~F~~~v~v~~~-~~~g~g~sKK~Aeq~AA~~aL~~Lk   68 (68)
T d2nuga2          15 KERPEYRLISVEGPHHKKKFIVEAKIKEY-RTLGEGKSKKEAEQRAAEELIKLLE   68 (68)
T ss_dssp             SCCCEEEEEEEESCGGGCEEEEEEEETTE-EEEEEESSHHHHHHHHHHHHHHHHC
T ss_pred             CCCCEEEEEEeeCCCCCcEEEEEEEECCE-EEEEecCCHHHHHHHHHHHHHHHhC
Confidence            6789997 566899999999999999996 5899999999999999999999884

>d2dmya1 d.50.1.1 (A:8-91) Spermatid perinuclear RNA-binding protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: dsRBD-like
superfamily: dsRNA-binding domain-like
family: Double-stranded RNA-binding domain (dsRBD)
domain: Spermatid perinuclear RNA-binding protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.46  E-value=3.1e-14  Score=107.67  Aligned_cols=54  Identities=19%  Similarity=0.257  Sum_probs=49.0

Q ss_pred             CCceEE-eeccCCCCCceEEEEEEECCEEeeCCCCCCHHHHHHHHHHHHHHHHhhh
Q 021849            4 AIPLYQ-CRKDEASGKVQFSCTVEIGDIRYIGGAAKTKKEAEIKAARTALLAIQSS   58 (306)
Q Consensus         4 ~lP~Y~-i~ksGPdHdk~FtAeV~IgGk~yG~G~GrSKKEAEQaAAK~AL~aL~~~   58 (306)
                      +.|.|. +..+||+|++.|+++|.|+|+.| .|.|+|||+|||.||+.||..|+..
T Consensus        23 ~~~~Y~~~~~~Gp~h~~~F~~~v~v~g~~~-~g~G~SKK~Aeq~AA~~aL~~L~~~   77 (84)
T d2dmya1          23 PGLQYKLLSQSGPVHAPVFTMSVDVDGTTY-EASGPSKKTAKLHVAVKVLQAMGYP   77 (84)
T ss_dssp             CSCCCEEEEEESCSSSCEEEEEEEETTEEE-EEEESSHHHHHHHHHHHHHHHHTCC
T ss_pred             CCCeEEEEEeeCCCCCCeEEEEEEECCEEE-EcCCCCHHHHHHHHHHHHHHHhCCC
Confidence            568997 46679999999999999999988 6999999999999999999999744

>d2b7ta1 d.50.1.1 (A:1-73) dsRNA-specific editase 1 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: dsRBD-like
superfamily: dsRNA-binding domain-like
family: Double-stranded RNA-binding domain (dsRBD)
domain: dsRNA-specific editase 1
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.44  E-value=3e-14  Score=104.99  Aligned_cols=52  Identities=25%  Similarity=0.285  Sum_probs=47.6

Q ss_pred             CCceEE-eeccCCCCCceEEEEEEECCEEeeCCCCCCHHHHHHHHHHHHHHHHh
Q 021849            4 AIPLYQ-CRKDEASGKVQFSCTVEIGDIRYIGGAAKTKKEAEIKAARTALLAIQ   56 (306)
Q Consensus         4 ~lP~Y~-i~ksGPdHdk~FtAeV~IgGk~yG~G~GrSKKEAEQaAAK~AL~aL~   56 (306)
                      ..|.|. +..+||+|++.|+++|.|+|+.| .|.|+|||+|||.||+.||+.|.
T Consensus        18 ~~~~y~~~~~~G~~h~~~F~~~v~v~~~~~-~g~G~SKK~Aeq~AA~~aL~~l~   70 (73)
T d2b7ta1          18 PGLQYMLLSQTGPVHAPLFVMSVEVNGQVF-EGSGPTKKKAKLHAAEKALRSFV   70 (73)
T ss_dssp             SCCEEEEEEEECSSSSCEEEEEEESSSSEE-EEEESSHHHHHHHHHHHHHHHHH
T ss_pred             CCCEEEEEEeeCCCCCceEEEEEEECCEEE-EcCCCcHHHHHHHHHHHHHHHHh
Confidence            468997 55579999999999999999998 89999999999999999999984

>d1qu6a2 d.50.1.1 (A:91-179) dsRNA-dependent protein kinase pkr {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: dsRBD-like
superfamily: dsRNA-binding domain-like
family: Double-stranded RNA-binding domain (dsRBD)
domain: dsRNA-dependent protein kinase pkr
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.44  E-value=2.3e-14  Score=108.67  Aligned_cols=56  Identities=29%  Similarity=0.335  Sum_probs=52.1

Q ss_pred             CceEEeeccCCCCCceEEEEEEECCEEeeCCCCCCHHHHHHHHHHHHHHHHhhhcc
Q 021849            5 IPLYQCRKDEASGKVQFSCTVEIGDIRYIGGAAKTKKEAEIKAARTALLAIQSSAS   60 (306)
Q Consensus         5 lP~Y~i~ksGPdHdk~FtAeV~IgGk~yG~G~GrSKKEAEQaAAK~AL~aL~~~s~   60 (306)
                      .|.|.+..+||+|.++|+|+|+|+|+.|+.|.|+|||+||+.||+.||..|.....
T Consensus        30 ~~~y~~~~~g~~h~~~F~~~v~i~g~~~~~g~G~sKK~Akq~AA~~Al~~L~~~~~   85 (89)
T d1qu6a2          30 TVNYEQCASGVHGPEGFHYKCKMGQKEYSIGTGSTKQEAKQLAAKLAYLQILSEET   85 (89)
T ss_dssp             EEEEEEEEECSSSSSEEEEEEEEETTBCCEEEESSHHHHHHHHHHHHHHHHHHCCC
T ss_pred             CcceeeeccCCCCCCceEEEEEECCccccccccchHHHHHHHHHHHHHHHHHccCC
Confidence            46798878999999999999999999999999999999999999999999987654

>d2cpna1 d.50.1.1 (A:150-225) TAR RNA-binding protein 2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: dsRBD-like
superfamily: dsRNA-binding domain-like
family: Double-stranded RNA-binding domain (dsRBD)
domain: TAR RNA-binding protein 2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.42  E-value=1.2e-13  Score=101.16  Aligned_cols=53  Identities=23%  Similarity=0.372  Sum_probs=48.0

Q ss_pred             CCCCceEE-eeccCCCCCceEEEEEEECCEEeeCCCCCCHHHHHHHHHHHHHHHH
Q 021849            2 NYAIPLYQ-CRKDEASGKVQFSCTVEIGDIRYIGGAAKTKKEAEIKAARTALLAI   55 (306)
Q Consensus         2 nL~lP~Y~-i~ksGPdHdk~FtAeV~IgGk~yG~G~GrSKKEAEQaAAK~AL~aL   55 (306)
                      .+.+|.|+ +..+||+|.+.|++.|+|++. ++.|.|+|||+|||.||+.||..|
T Consensus        23 ~~~~P~Y~~~~~~g~~h~~~F~~~v~v~~~-~~~g~G~SKK~Aeq~AA~~aL~~L   76 (76)
T d2cpna1          23 GWRLPEYTVTQESGPAHRKEFTMTCRVERF-IEIGSGTSKKLAKRNAAAKMLLRV   76 (76)
T ss_dssp             TCCCCEEEEEEEECCSSSCEEEEEEEETTE-EEEEEESSHHHHHHHHHHHHHHHH
T ss_pred             CCCCCEEEEeeeeccCCCccEEEEEEecce-eeccccccHHHHHHHHHHHHHHhC
Confidence            46789997 456899999999999999986 599999999999999999999876

>d1whqa_ d.50.1.1 (A:) ATP-dependent RNA helicase A, Dhx9 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: dsRBD-like
superfamily: dsRNA-binding domain-like
family: Double-stranded RNA-binding domain (dsRBD)
domain: ATP-dependent RNA helicase A, Dhx9
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.42  E-value=6.5e-14  Score=108.89  Aligned_cols=56  Identities=25%  Similarity=0.389  Sum_probs=51.2

Q ss_pred             CceEEeeccCCCCCceEEEEEEECCEEe-eCCCCCCHHHHHHHHHHHHHHHHhhhcc
Q 021849            5 IPLYQCRKDEASGKVQFSCTVEIGDIRY-IGGAAKTKKEAEIKAARTALLAIQSSAS   60 (306)
Q Consensus         5 lP~Y~i~ksGPdHdk~FtAeV~IgGk~y-G~G~GrSKKEAEQaAAK~AL~aL~~~s~   60 (306)
                      .|.|.+..+||+|+++|+|+|.|+|..| +.|.|+|||+|||.||+.||..|.....
T Consensus        22 ~P~Y~~~~~G~~h~~~F~~~v~v~g~~~~~~g~g~sKK~AEq~AA~~al~~L~~~~~   78 (99)
T d1whqa_          22 TPAYEIRAVGNKNRQKFMCEVRVEGFNYAGMGNSTNKKDAQSNAARDFVNYLVRINE   78 (99)
T ss_dssp             CCEEEEEEEECSSSEEEEEEEECTTCSCCEEEEESSHHHHHHHHHHHHHHHHHHHTS
T ss_pred             CCeEEEecccCCCCceEEEEEEeccccceeccCCccHHHHHHHHHHHHHHHHHHcCC
Confidence            6999988899999999999999999775 8999999999999999999999976543

>d1uila_ d.50.1.1 (A:) ATP-dependent RNA helicase A, Dhx9 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: dsRBD-like
superfamily: dsRNA-binding domain-like
family: Double-stranded RNA-binding domain (dsRBD)
domain: ATP-dependent RNA helicase A, Dhx9
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.39  E-value=2.1e-13  Score=108.50  Aligned_cols=54  Identities=15%  Similarity=0.109  Sum_probs=50.2

Q ss_pred             CceEEeeccCCCCCceEEEEEEE-----CCEEeeCCCCCCHHHHHHHHHHHHHHHHhhh
Q 021849            5 IPLYQCRKDEASGKVQFSCTVEI-----GDIRYIGGAAKTKKEAEIKAARTALLAIQSS   58 (306)
Q Consensus         5 lP~Y~i~ksGPdHdk~FtAeV~I-----gGk~yG~G~GrSKKEAEQaAAK~AL~aL~~~   58 (306)
                      .|.|.+...||+|++.|+|+|.|     +++.++.|.|+|||+|||.||+.||..|...
T Consensus        42 ~p~Y~i~~~Gp~H~~~F~~~v~i~~~~~~~~~~~~G~G~sKK~AEq~AA~~~l~~L~~~  100 (113)
T d1uila_          42 QGEYKYTQVGPDHNRSFIAEMTIYIKQLGRRIFAREHGSNKKLAAQSCALSLVRQLYHL  100 (113)
T ss_dssp             CCCCEEEEESCSTTCEEEEEEEEEETTTTEEEEEECCCSSHHHHHHHHHHHHHHHHHHH
T ss_pred             CCceEEeeeccCCCCeEEEEEEEeeeccCCeEEeecccchHHHHHHHHHHHHHHHHHHc
Confidence            49999888899999999999999     7789999999999999999999999999754

>d2b7va1 d.50.1.1 (A:1-71) dsRNA-specific editase 1 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: dsRBD-like
superfamily: dsRNA-binding domain-like
family: Double-stranded RNA-binding domain (dsRBD)
domain: dsRNA-specific editase 1
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.39  E-value=1.2e-13  Score=101.44  Aligned_cols=52  Identities=23%  Similarity=0.288  Sum_probs=47.6

Q ss_pred             CceEEe-eccCCCCCceEEEEEEECCEEeeCCCCCCHHHHHHHHHHHHHHHHhh
Q 021849            5 IPLYQC-RKDEASGKVQFSCTVEIGDIRYIGGAAKTKKEAEIKAARTALLAIQS   57 (306)
Q Consensus         5 lP~Y~i-~ksGPdHdk~FtAeV~IgGk~yG~G~GrSKKEAEQaAAK~AL~aL~~   57 (306)
                      -+.|++ ..+||+|.++|+++|.|+|+.| .|.|+|||+||+.||+.||..|.+
T Consensus        16 ~~~y~~~~~~G~~h~~~F~~~v~v~~~~~-~g~G~SKK~Ak~~AA~~aL~~L~~   68 (71)
T d2b7va1          16 GLKYDFLSESGESHAKSFVMSVVVDGQFF-EGSGRNKKLAKARAAQSALATVFN   68 (71)
T ss_dssp             SCEEEEEECCCCTTTCCEEEEEECSSCEE-EEEESSHHHHHHHHHHHHHHHHHH
T ss_pred             CCeEEEeeeeCCCCCCeEEEEEEECCEEE-EecCCCHHHHHHHHHHHHHHHHHc
Confidence            468974 5689999999999999999998 899999999999999999999864

>d1uhza_ d.50.1.1 (A:) staufen homolog 2 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: dsRBD-like
superfamily: dsRNA-binding domain-like
family: Double-stranded RNA-binding domain (dsRBD)
domain: staufen homolog 2
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.39  E-value=2.6e-13  Score=103.14  Aligned_cols=56  Identities=23%  Similarity=0.252  Sum_probs=50.5

Q ss_pred             CCCCceEEee-ccCCCCCceEEEEEEECCEEeeCCCCCCHHHHHHHHHHHHHHHHhhh
Q 021849            2 NYAIPLYQCR-KDEASGKVQFSCTVEIGDIRYIGGAAKTKKEAEIKAARTALLAIQSS   58 (306)
Q Consensus         2 nL~lP~Y~i~-ksGPdHdk~FtAeV~IgGk~yG~G~GrSKKEAEQaAAK~AL~aL~~~   58 (306)
                      .+.+|.|++. .+||+|++.|+++|.|+++.+ .|.|+|||+||+.||+.||..|...
T Consensus        20 ~~~~P~Y~~~~~~g~~h~~~F~~~v~v~~~~~-~g~g~SKK~Ae~~AA~~aL~~l~~~   76 (89)
T d1uhza_          20 KEKEPDYILLSERGMPRRREFVMQVKVGNEVA-TGTGPNKKIAKKNAAEAMLLQLGYK   76 (89)
T ss_dssp             TSCCCEEEEEEEESCSTTCEEEEEEEETTEEE-EEEESSHHHHHHHHHHHHHHHHTSS
T ss_pred             CCCCCEEEeccccccCCceeEEEEEEEeeeec-cccchHHHHHHHHHHHHHHHHhCcc
Confidence            4689999854 579999999999999999976 8999999999999999999999744

>d1x47a1 d.50.1.1 (A:8-92) Dgcr8 protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: dsRBD-like
superfamily: dsRNA-binding domain-like
family: Double-stranded RNA-binding domain (dsRBD)
domain: Dgcr8 protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.33  E-value=8.9e-13  Score=98.86  Aligned_cols=54  Identities=30%  Similarity=0.420  Sum_probs=46.7

Q ss_pred             CCCceEEeec-cCCCCCceEEEEEEECCEEeeCCCCCCHHHHHHHHHHHHHHHHhhh
Q 021849            3 YAIPLYQCRK-DEASGKVQFSCTVEIGDIRYIGGAAKTKKEAEIKAARTALLAIQSS   58 (306)
Q Consensus         3 L~lP~Y~i~k-sGPdHdk~FtAeV~IgGk~yG~G~GrSKKEAEQaAAK~AL~aL~~~   58 (306)
                      +.+|.|.+.. .||  ++.|+++|.|+|+.|+.|.|+|||+|||.||+.||..|...
T Consensus        24 ~~~p~Y~~~~~~g~--~~~F~~~v~i~g~~~~~g~G~sKK~Aeq~AA~~AL~~L~~~   78 (85)
T d1x47a1          24 KVRPVYNFFECENP--SEPFGASVTIDGVTYGSGTASSKKLAKNKAARATLEILIPD   78 (85)
T ss_dssp             CSCCEEEEEECSSS--SCCEEEEEEETTEEEEEEEESSHHHHHHHHHHHHHHHHCSS
T ss_pred             CCCCCeEEEecCCC--CCCEEEEEEECCEEEecCCcchHHHHHHHHHHHHHHHHHHH
Confidence            5789998644 454  45699999999999999999999999999999999998643

>d1ekza_ d.50.1.1 (A:) Staufen, domain III {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a+b)
fold: dsRBD-like
superfamily: dsRNA-binding domain-like
family: Double-stranded RNA-binding domain (dsRBD)
domain: Staufen, domain III
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.32  E-value=1.8e-13  Score=100.85  Aligned_cols=52  Identities=21%  Similarity=0.326  Sum_probs=46.6

Q ss_pred             CceEE-eeccCCCCCceEEEEEEECCEEeeCCCCCCHHHHHHHHHHHHHHHHhh
Q 021849            5 IPLYQ-CRKDEASGKVQFSCTVEIGDIRYIGGAAKTKKEAEIKAARTALLAIQS   57 (306)
Q Consensus         5 lP~Y~-i~ksGPdHdk~FtAeV~IgGk~yG~G~GrSKKEAEQaAAK~AL~aL~~   57 (306)
                      .|.|. +..+||+|++.|+|+|.|++. ++.|+|+|||+|||.||+.||..|+.
T Consensus        23 ~~~y~~~~~~G~~h~~~F~~~v~v~~~-~~~g~G~SKK~Aeq~AA~~al~~L~~   75 (76)
T d1ekza_          23 TVHFKVLREEGPAHMKNFITACIVGSI-VTEGEGNGKKVSKKRAAEKMLVELQK   75 (76)
T ss_dssp             CCEEEESSSCCSSSCSCSSEEEEETTE-EEEECCCSTTSSSHHHHHHHHHHHTT
T ss_pred             CCeEEEEEeeCCCCCeEEEEEEEEeee-EeeeccCcHHHHHHHHHHHHHHHHHc
Confidence            38897 455799999999999999885 78999999999999999999999864

>d1whna_ d.50.1.1 (A:) tRNA-dihydrouridine synthase 2-like, Dus2l (2310016k04Rik) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: dsRBD-like
superfamily: dsRNA-binding domain-like
family: Double-stranded RNA-binding domain (dsRBD)
domain: tRNA-dihydrouridine synthase 2-like, Dus2l (2310016k04Rik)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.23  E-value=5.6e-12  Score=102.12  Aligned_cols=55  Identities=24%  Similarity=0.248  Sum_probs=48.6

Q ss_pred             CCCCCceEEeeccCCCCCceEEEEEEECCEEeeCCCC-CCHHHHHHHHHHHHHHHHhh
Q 021849            1 MNYAIPLYQCRKDEASGKVQFSCTVEIGDIRYIGGAA-KTKKEAEIKAARTALLAIQS   57 (306)
Q Consensus         1 MnL~lP~Y~i~ksGPdHdk~FtAeV~IgGk~yG~G~G-rSKKEAEQaAAK~AL~aL~~   57 (306)
                      +.+.+|.|.+...  .|+++|+++|.|+|+.|+.+.| +|||+|||.||+.||..|..
T Consensus        39 ~~~~~P~Y~~~~~--~~~~~F~~~V~v~g~~~~s~~g~~SKK~AEq~AA~~AL~~Lg~   94 (128)
T d1whna_          39 EKLPQPVYETVQR--TIDRMFCSVVTVAEQKYQSTLWDKSKKLAEQTAAIVCLRSQGL   94 (128)
T ss_dssp             TTCCCCCCCEEEC--SSSCCEEEEEEETTEEEEESSCBSSHHHHHHHHHHHHHHHHTC
T ss_pred             cCCCCCeEEEeec--ccCCCCEEEEEECCeEeeccCCcccHHHHHHHHHHHHHHHhCC
Confidence            3578999987664  4888999999999999999886 89999999999999999963

>d1t4oa_ d.50.1.1 (A:) RNase III, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: dsRBD-like
superfamily: dsRNA-binding domain-like
family: Double-stranded RNA-binding domain (dsRBD)
domain: RNase III, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.16  E-value=1e-11  Score=92.39  Aligned_cols=53  Identities=19%  Similarity=0.088  Sum_probs=42.1

Q ss_pred             CceEEeeccCCCCCceEEEEEEE-CCEEeeCCCCCCHHHHHHHHHHHHHHHHhh
Q 021849            5 IPLYQCRKDEASGKVQFSCTVEI-GDIRYIGGAAKTKKEAEIKAARTALLAIQS   57 (306)
Q Consensus         5 lP~Y~i~ksGPdHdk~FtAeV~I-gGk~yG~G~GrSKKEAEQaAAK~AL~aL~~   57 (306)
                      .|.|.+...|++|...|++.|.| ++..++.|.|+|||+|||.||+.||..+..
T Consensus        22 ~P~Y~~~~~~~~~~~~f~v~~~v~~~~~~~~g~g~SKK~AEq~AA~~aL~~~~~   75 (81)
T d1t4oa_          22 RLHYVTVKKPTAVDPNSIVECRVGDGTVLGTGVGRNIKIAGIRAAENALRDKKM   75 (81)
T ss_dssp             CCEEEEEECCCSSCCCEEEEEECTTCCEEEEEEESSHHHHHHHHHHHHHHCHHH
T ss_pred             CcEEEEeccCCCCCCCEEEEEEEecCceEEecccchhhHHHHHHHHHHHHhccH
Confidence            39998666654444556666655 678999999999999999999999988763