Citrus Sinensis ID: 021856

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300------
Protein Sequence
MAVETETPSSAGPASSSSSSTTSHQQSSTTSSTTSHQPSSTTSPPEPSLKQPQVPASSGFPAFGNGEGGMLPVMYPVALPGLYHLENQQQSNNRGAGIYAVPVHPYSGIPSNTLIPLTYNVPTTRPTTQAGPAGSEHGQAGQEQQQAARQRQVVVRRFQIAFHLDLMLILKLAAVIFVFNQDGSRLRLSALVLLASLIYLYQTGALTPLLRWLSQSMQRAAQPPRPAVRAENVPAAARQGNDVAEGQAGAENENQLPNDGNQAAGNENVVDPGANGGNQWWGIVKEIQMIVFGFITSLLPGFHNID
Secondary Structure (PSIPRED)
cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHccccccEEccccccccccccccccccccccccccccccccccccccccccHHHHHHHHcccEEEEEEHHHHHHHHHHHHHHHHHEEEEcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccHHHHcccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHcccccccc
Secondary Structure Prediction (SSPRO)
ccEEcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEcccccccccccccccHHccccccEEEEccccccccccccEEEEEEEccccccccccccccHHccccccccccccccccEEEHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccHHccccccccccccccccccHHHHHHHHHHHHHHHHHccccccccc
Coil and Loop (DISEMBL)
mavetetpssagpassssssttshqqssttssttshqpssttsppepslkqpqvpassgfpafgngeggmlpvmypvalpglyhlenqqqsnnrgagiyavpvhpysgipsntlipltynvpttrpttqagpagsehgqagQEQQQAARQRQVVVRRFQIAFHLDLMLILKLAAVIFVFNQDGSRLRLSALVLLASLIYLYQTGALTPLLRWLSQSMQraaqpprpavraenvpaaarqgndvaegqagaenenqlpndgnqaagnenvvdpganggnqwWGIVKEIQMIVFGFItsllpgfhnid
Flexible Loop (DISEMBL)
mavetetpssagpassssssttshqqssttssttshqpssTTSPPEPSLKQPQVPASSGFPAFGNGEGGMLPVMYPVALPGLYHLENQQQSNNRGAGIYAVPVHPYSGIPSNTLIPLTYNVPTTRPTTQAGPAGSEHGQAGQEQQQAARQRQVVVRRFQIAFHLDLMLILKLAAVIFVFNQDGSRLRLSALVLLASLIYLYQTGALTPLLRWLSQSMQRAAQPPRPAVRAENVPAAARQGNDVAEGQAGAENENQLPNDGNQAAGNENVVDPGANGGNQWWGIVKEIQMIVFGFITsllpgfhnid
Low Complexity Region (SEG)
MAVEtetpssagpassssssttshqqssttssttshqpssttsppepsLKQPQVPASSGFPAFGNGEGGMLPVMYPVALPGLYHLENQQQSNNRGAGIYAVPVHPYSGIPSNTLIPLTYNVPTTRPTTQAGPAGSEHGqagqeqqqaarqrqvvvrrfqIAFHLDLMLILKLAAVIFVFNQDGSrlrlsalvllasliylyQTGALTPLLRWLSQSMqraaqpprpavraENVPAAARQGNDVAEGQAGAENENQLPNDGNQAAGNENVVDPGANGGNQWWGIVKEIQMIVFGFITSLLPGFHNID
Disordered region (IsUnstruct)
******************************************************************EGGMLPVMYPVALPGLYHLENQ****NRGAGIYAVPVHPYSGIPSNTLIPLTYNV******************************QVVVRRFQIAFHLDLMLILKLAAVIFVFNQDGSRLRLSALVLLASLIYLYQTGALTPLLRWL*************************************************************NGGNQWWGIVKEIQMIVFGFITSLLPGFH***
Disordered Region (DISOPRED)
*************************************************************AFGNGEGGMLPVMYPVALPGLYH***********AGIYAVPVHPYSGIPSNTLIP****************************************RFQIAFHLDLMLILKLAAVIFVFNQDGSRLRLSALVLLASLIYLYQTGALTPLLRWLSQS************************************************************GNQWWGIVKEIQMIVFGFITSLLPGFH***
Disordered Region (DISEMBL)
*******************************************************ASSGFPAFGNGEGGMLPVMYPVALPGLYHLENQQQSNNRGAGIYAVPVHPYSGIPSNTLIPLTYNVPTTRP*************************QVVVRRFQIAFHLDLMLILKLAAVIFVFNQDGSRLRLSALVLLASLIYLYQTGALTPLLRWLSQ*******************AAARQGNDVAEGQAGAENENQLPNDGNQAAGNENVVDPGANGGNQWWGIVKEIQMIVFGFITSLLPGFHNID
Disordered Region (DISPRO)
************************************************LKQPQVPASSGFPAFGNGEGGMLPVMYPVALPGLYHLENQQQSNNRGAGIYAVPVHPYSGIPSNTLIPLTYNVPT***************************RQVVVRRFQIAFHLDLMLILKLAAVIFVFNQDGSRLRLSALVLLASLIYLYQTGALTPLLRWLSQSMQR*********************************************************GNQWWGIVKEIQMIVFGFITSLLPGF****
Transmembrane Helix (TMHMM)
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Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
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TM Helix, Signal Peptide (Phobius)
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Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MAVETETPSSAGPASSSSSSTTSHQQSSTTSSTTSHQPSSTTSPPEPSLKQPQVPASSGFPAFGNGEGGMLPVMYPVALPGLYHLENQQQSNNRGAGIYAVPVHPYSGIPSNTLIPLTYNVPTTRPTTQAGPAGSEHGQAGQEQQQAARQRQVVVRRFQIAFHLDLMLILKLAAVIFVFNQDGSRLRLSALVLLASLIYLYQTGALTPLLRWLSQSMQRAAQPPRPAVRAENVPAAARQGNDVAEGQAGAENENQLPNDGNQAAGNENVVDPGANGGNQWWGIVKEIQMIVFGFITSLLPGFHNID
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	306
225470670	290	PREDICTED: uncharacterized protein LOC10	0.888	0.937	0.619	7e-78
18417501	291	uncharacterized protein [Arabidopsis tha	0.898	0.945	0.601	2e-76
224142709	290	predicted protein [Populus trichocarpa]	0.843	0.889	0.659	5e-75
255634923	303	unknown [Glycine max]	0.823	0.831	0.627	1e-69
363808180	292	uncharacterized protein LOC100815317 [Gl	0.820	0.859	0.597	2e-69
363807514	301	uncharacterized protein LOC100813503 [Gl	0.820	0.833	0.627	4e-68
255573769	287	conserved hypothetical protein [Ricinus	0.869	0.926	0.596	3e-66
224087315	247	predicted protein [Populus trichocarpa]	0.754	0.935	0.620	4e-65
449457191	305	PREDICTED: uncharacterized protein LOC10	0.833	0.836	0.568	2e-64
297798988	283	hypothetical protein ARALYDRAFT_491758 [	0.852	0.922	0.601	2e-64

>gi|225470670|ref|XP_002269262.1| PREDICTED: uncharacterized protein LOC100255532 [Vitis vinifera] gi|296090285|emb|CBI40104.3| unnamed protein product [Vitis vinifera]

 Score =  296 bits (758), Expect = 7e-78,   Method: Compositional matrix adjust.
 Identities = 179/289 (61%), Positives = 206/289 (71%), Gaps = 17/289 (5%)

Query: 32  STTSHQPSSTTSPPEPSLKQPQVPASSGFPAFGNGEGGMLPVMYPVALPGLYHLENQQQS 91
           S+ S  PS  +  PE  LKQ Q+P  SGFP   NG   M P+MYP  +PGL  L+NQ+Q 
Sbjct: 5   SSASQSPSQKS--PEDPLKQFQIPTFSGFPVSPNGNIQMFPIMYPALVPGLISLQNQEQV 62

Query: 92  NNRGAGIYAVPV----HPYSGIPSNTLIPLTYNVPTTRPTTQAGPAGSEHGQAGQEQQQA 147
           N RGAGIYAVPV     P SG+PSN LIPLTYN+PT   +++ GP G EHGQ GQ Q Q 
Sbjct: 63  N-RGAGIYAVPVPPLMGPISGLPSNALIPLTYNIPTRTSSSEGGPVGEEHGQVGQPQPQQ 121

Query: 148 ARQRQV---VVRRFQIAFHLDLMLILKLAAVIFVFNQDGSRLRLSALVLLASLIYLYQTG 204
            +        VRRFQIAF LD+MLILKL AV+F+FNQDGSR RL  LV  ASLIYL+QTG
Sbjct: 122 QQPVPQRQVAVRRFQIAFQLDVMLILKLIAVVFLFNQDGSRQRLVILVFFASLIYLHQTG 181

Query: 205 ALTPLLRWLSQSM---QRAAQPPRPAVRAENVPAAARQGND---VAEGQAGAENENQLPN 258
           ALTP +RWLSQ M       QPPRPAVRAENVPAA RQGN+   +AEGQAGA ++NQ   
Sbjct: 182 ALTPFIRWLSQGMQRAAAPPQPPRPAVRAENVPAAVRQGNENAAMAEGQAGAADQNQQAE 241

Query: 259 DGNQAAGNENVVD-PGANGGNQWWGIVKEIQMIVFGFITSLLPGFHNID 306
           DGN+A  NEN+ +  G +GGN WWGIVKEIQMIV GFITSLLPGFHN+D
Sbjct: 242 DGNEAIENENIAEGGGGDGGNHWWGIVKEIQMIVVGFITSLLPGFHNVD 290

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|18417501|ref|NP_567837.1| uncharacterized protein [Arabidopsis thaliana] gi|4914420|emb|CAB43671.1| hypothetical protein [Arabidopsis thaliana] gi|7269895|emb|CAB79754.1| hypothetical protein [Arabidopsis thaliana] gi|20466466|gb|AAM20550.1| unknown protein [Arabidopsis thaliana] gi|21537007|gb|AAM61348.1| unknown [Arabidopsis thaliana] gi|22136434|gb|AAM91295.1| unknown protein [Arabidopsis thaliana] gi|332660302|gb|AEE85702.1| uncharacterized protein [Arabidopsis thaliana]

 Score =  291 bits (746), Expect = 2e-76,   Method: Compositional matrix adjust.
 Identities = 178/296 (60%), Positives = 207/296 (69%), Gaps = 21/296 (7%)

Query: 25  QQSSTTSSTTSHQPSSTTSPPEPSLKQPQVPASS-GFPAFGNGEGGMLPVMYPVALPGLY 83
           ++    SS+  HQPS    P +  +K PQ PASS GF A+ NG+  M PV YP  +PG  
Sbjct: 3   EEPEKVSSSVLHQPSGDKKPEDVGIK-PQDPASSSGFRAYPNGDSPMYPVFYPGLVPGSN 61

Query: 84  HLENQQQSNNRGAGIYAVPVHPY----SGIPSNTLIPLTYNVPTTRPTTQAGPAGSEHGQ 139
            ++ ++Q N RGAGIYAVPVH +    +G+PSN LIPLTYNVPTTRP  +A   G    Q
Sbjct: 62  PVQYEEQMN-RGAGIYAVPVHQFGGHVAGLPSNYLIPLTYNVPTTRPNNEAETGGENQAQ 120

Query: 140 AGQEQQQA--ARQRQVVVRRFQIAFHLDLMLILKLAAVIFVFNQDGSRLRLSALVLLASL 197
           AGQ QQQ   A QR VV RRFQIAF LDL LILKLAAVIF+FNQDGSR RL+ LV+ A++
Sbjct: 121 AGQGQQQQLPANQRHVVERRFQIAFQLDLFLILKLAAVIFLFNQDGSRQRLAVLVIFATI 180

Query: 198 IYLYQTGALTPLLRWLSQSMQRAAQPP----RPAVRAENVPAAARQGNDVAEGQAGAENE 253
           IYLYQTGAL P +RWLSQ M RAA PP    RPAVRA+N PAAA   N+ A  + G ENE
Sbjct: 181 IYLYQTGALAPFVRWLSQGMHRAAVPPARPHRPAVRADNDPAAAVPLNENAVLE-GEENE 239

Query: 254 NQLPNDGNQAAGNENV---VDPGANGGNQWWGIVKEIQMIVFGFITSLLPGFHNID 306
               ++GN+A  N N    VD G N GNQWWGIVKEIQMIVFGFITSLLPGFHNI+
Sbjct: 240 ---ADNGNRARANANENENVDAG-NQGNQWWGIVKEIQMIVFGFITSLLPGFHNIE 291

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224142709|ref|XP_002324697.1| predicted protein [Populus trichocarpa] gi|222866131|gb|EEF03262.1| predicted protein [Populus trichocarpa]

 Score =  287 bits (734), Expect = 5e-75,   Method: Compositional matrix adjust.
 Identities = 180/273 (65%), Positives = 205/273 (75%), Gaps = 15/273 (5%)

Query: 45  PEPSLKQPQVP-ASSGFPAFGNGEGGMLPVMYPVALPGLYHLENQQQSNNRGAGIYAVPV 103
           PE  LKQ  VP A SGFPA+ +G   M PVMYP  +PGL  ++NQ+Q+N+ G GIYAVPV
Sbjct: 22  PEDKLKQSWVPSAFSGFPAYPDGGFQMFPVMYPALVPGLNAMQNQEQANH-GPGIYAVPV 80

Query: 104 ----HPYSGIPSNTLIPLTYNVPTTRPTTQAGPAGSEHGQAGQEQQQAARQRQVVVRRFQ 159
                P +G+PSNTLIPLT N+PT RPT +AG    +     Q+ QQ A QRQ+VVRRFQ
Sbjct: 81  PQFMGPIAGLPSNTLIPLTLNIPT-RPTPEAGATSDQAQGGQQQLQQPAAQRQIVVRRFQ 139

Query: 160 IAFHLDLMLILKLAAVIFVFNQDGSRLRLSALVLLASLIYLYQTGALTPLLRWLSQSMQ- 218
           IAF LDL LILKLAAVIF+F+QDGSR RL  LV LASL+YLYQTGALTPL++WLSQSMQ 
Sbjct: 140 IAFELDLFLILKLAAVIFLFHQDGSRQRLLVLVFLASLVYLYQTGALTPLVQWLSQSMQR 199

Query: 219 --RAAQPPRPAVRAENVPAAARQGNDV--AEGQAGAENENQLPNDGNQAAGNENVVDPGA 274
                +PPRPAVRAEN  AA RQ  DV  AEGQ   ENEN+   DGNQAA NENV +PG 
Sbjct: 200 AAAPPRPPRPAVRAEN--AAIRQNEDVALAEGQPAVENENRPAEDGNQAAENENVAEPGG 257

Query: 275 -NGGNQWWGIVKEIQMIVFGFITSLLPGFHNID 306
            NGG+ WWGIVKEIQMIVFGFITSLLPGFH+ID
Sbjct: 258 DNGGHHWWGIVKEIQMIVFGFITSLLPGFHHID 290

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255634923|gb|ACU17820.1| unknown [Glycine max]

 Score =  269 bits (688), Expect = 1e-69,   Method: Compositional matrix adjust.
 Identities = 167/266 (62%), Positives = 194/266 (72%), Gaps = 14/266 (5%)

Query: 52  PQVPASSGFPAFGNGEG-GMLPVMYPVALPGLYHLENQQQSNNRGAGIYAVPVHPY---- 106
           PQVPA S F  F +G    M+P MYP  +PGL  L   ++  NRGAGIYAVPV+PY    
Sbjct: 36  PQVPALSNFMPFPSGYYYQMIPGMYPALVPGL-TLPQHEEHGNRGAGIYAVPVNPYDRQV 94

Query: 107 SGIPSNTLIPLTYNVPTTRPTTQAGPAGSEHGQAGQEQQQAARQ--RQVVVRRFQIAFHL 164
           +G+P NTLIPLTY  PT+RP+++A  A    GQAGQ+ QQ      RQVVVRRFQIAF +
Sbjct: 95  TGLPYNTLIPLTYRTPTSRPSSEATVASENQGQAGQQPQQQQPAPQRQVVVRRFQIAFQI 154

Query: 165 DLMLILKLAAVIFVFNQDGSRLRLSALVLLASLIYLYQTGALTPLLRWLSQSMQ---RAA 221
           DL+L+LKLAAVIF+FNQDGSR RL  LV  A+L+YLYQTGALTP++RWLS+ MQ      
Sbjct: 155 DLLLMLKLAAVIFLFNQDGSRQRLIVLVFFAALVYLYQTGALTPIIRWLSRGMQRAAAPP 214

Query: 222 QPPRPAVRAENVPAAARQGNDV--AEGQAGAENENQLPNDGNQAAGNENVVDPG-ANGGN 278
            PPRPA RAENVPA   +G++   AEGQ  AEN NQ  ND +QA  NENV + G  NGGN
Sbjct: 215 HPPRPAARAENVPAPRPEGDNAAPAEGQPEAENGNQPANDADQAVENENVAEHGNVNGGN 274

Query: 279 QWWGIVKEIQMIVFGFITSLLPGFHN 304
           QWWGIVKEIQMIVFGFITSLLPGFHN
Sbjct: 275 QWWGIVKEIQMIVFGFITSLLPGFHN 300

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|363808180|ref|NP_001242739.1| uncharacterized protein LOC100815317 [Glycine max] gi|255641087|gb|ACU20822.1| unknown [Glycine max]

 Score =  268 bits (686), Expect = 2e-69,   Method: Compositional matrix adjust.
 Identities = 159/266 (59%), Positives = 190/266 (71%), Gaps = 15/266 (5%)

Query: 52  PQVPASSGFPAFGNGEGGMLPVMYPVALPGLYHLENQQQSNNRGAGIYAVPVHPY----S 107
           PQVPA S F  F  G   M+P MYP  +PGL  L   +++ NRGAGIYAVPV+PY    +
Sbjct: 26  PQVPAFSNFMPFPGGCYQMIPGMYPALVPGL-TLPQHEENGNRGAGIYAVPVNPYDRQIT 84

Query: 108 GIPSNTLIPLTYNVPTTRPTTQAGPAGSEHGQAGQEQQQAARQRQ---VVVRRFQIAFHL 164
           G+  NTLIPLTY+ P++RP+++A  A SE+     +  Q  +      VVVRRFQIAF +
Sbjct: 85  GLTYNTLIPLTYHTPSSRPSSEAA-AASENQGQAGQLPQQQQPAPQRQVVVRRFQIAFQI 143

Query: 165 DLMLILKLAAVIFVFNQDGSRLRLSALVLLASLIYLYQTGALTPLLRWLSQSMQRAAQPP 224
           DL L+LKLAAVIF+FNQDGSR RL  LV  A+L+YLYQTGALTP++RWLSQSMQRAA PP
Sbjct: 144 DLFLMLKLAAVIFLFNQDGSRQRLIVLVFFAALVYLYQTGALTPIIRWLSQSMQRAAAPP 203

Query: 225 RPAVRA---ENVPAAARQGNDV--AEGQAGAENENQLPNDGNQAAGNENVVDP-GANGGN 278
            P   A   E++PA   +G++   AEGQ  AEN NQ  ND +QA  NENV +P   NGGN
Sbjct: 204 HPPRPAARDEHIPAPRPEGDNAAPAEGQPEAENGNQPANDADQAVENENVAEPDNVNGGN 263

Query: 279 QWWGIVKEIQMIVFGFITSLLPGFHN 304
           QWWGIVKEIQMIVFGFITSLLPGFHN
Sbjct: 264 QWWGIVKEIQMIVFGFITSLLPGFHN 289

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|363807514|ref|NP_001242654.1| uncharacterized protein LOC100813503 [Glycine max] gi|255642297|gb|ACU21413.1| unknown [Glycine max]

 Score =  264 bits (674), Expect = 4e-68,   Method: Compositional matrix adjust.
 Identities = 167/266 (62%), Positives = 193/266 (72%), Gaps = 15/266 (5%)

Query: 52  PQVPASSGFPAFGNGEG-GMLPVMYPVALPGLYHLENQQQSNNRGAGIYAVPVHPY---- 106
           PQVPA S F  F +G    M+P MYP  +PGL  L   ++  NRGAGIYAVPV+PY    
Sbjct: 35  PQVPALSNFMPFPSGYYYQMIPGMYPALVPGL-TLPQHEEHGNRGAGIYAVPVNPYDRQV 93

Query: 107 SGIPSNTLIPLTYNVPTTRPTTQAGPAGSEHGQAGQEQQQAARQ--RQVVVRRFQIAFHL 164
           +G+P NTLIPLTY  PT RP+++A  A    GQAGQ+ QQ      RQVVVRRFQIAF +
Sbjct: 94  TGLPYNTLIPLTYRTPT-RPSSEATVASENQGQAGQQPQQQQPAPQRQVVVRRFQIAFQI 152

Query: 165 DLMLILKLAAVIFVFNQDGSRLRLSALVLLASLIYLYQTGALTPLLRWLSQSMQ---RAA 221
           DL+L+LKLAAVIF+FNQDGSR RL  LV  A+L+YLYQTGALTP++RWLS+ MQ      
Sbjct: 153 DLLLMLKLAAVIFLFNQDGSRQRLIVLVFFAALVYLYQTGALTPIIRWLSRGMQRAAAPP 212

Query: 222 QPPRPAVRAENVPAAARQGNDV--AEGQAGAENENQLPNDGNQAAGNENVVDPG-ANGGN 278
            PPRPA RAENVPA   +G++   AEGQ  AEN NQ  ND +QA  NENV + G  NGGN
Sbjct: 213 HPPRPAARAENVPAPRPEGDNAAPAEGQPEAENGNQPANDADQAVENENVAEHGNVNGGN 272

Query: 279 QWWGIVKEIQMIVFGFITSLLPGFHN 304
           QWWGIVKEIQMIVFGFITSLLPGFHN
Sbjct: 273 QWWGIVKEIQMIVFGFITSLLPGFHN 298

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255573769|ref|XP_002527805.1| conserved hypothetical protein [Ricinus communis] gi|223532801|gb|EEF34577.1| conserved hypothetical protein [Ricinus communis]

 Score =  258 bits (658), Expect = 3e-66,   Method: Compositional matrix adjust.
 Identities = 170/285 (59%), Positives = 198/285 (69%), Gaps = 19/285 (6%)

Query: 39  SSTTSPPEPSLKQPQVPASSGFPAFGNGEGGMLPVMYPVALPGLY-HLENQQQSNNRGAG 97
           + T + PE + K   V A S  P +  G+  M P++YP  +PG    L+NQ Q + RGAG
Sbjct: 5   TDTRNSPEDNSKH-HVLACSSLPPYPFGDLQMYPIVYPAMVPGFTPSLQNQDQMH-RGAG 62

Query: 98  IYAVPV----HPYSGIPSNTLIPLTYNVPTTRPTTQAGPAGSEHGQAGQEQQQAARQ--- 150
           IYAVPV     P +G PSNTLIPLTYNVPTTR ++ AG          Q QQ   +Q   
Sbjct: 63  IYAVPVPPVMGPIAGFPSNTLIPLTYNVPTTRSSSNAGAPSDHGQGGQQPQQHQQQQQQP 122

Query: 151 ---RQVVVRRFQIAFHLDLMLILKLAAVIFVFNQDGSRLRLSALVLLASLIYLYQTGALT 207
              RQVVVRRFQIAF LDL+LILKLAAVIF+FNQDGSR RL  LV  ASL+YLYQTGALT
Sbjct: 123 AAQRQVVVRRFQIAFQLDLLLILKLAAVIFLFNQDGSRQRLVVLVFFASLVYLYQTGALT 182

Query: 208 PLLRWLSQSM---QRAAQPPRPAVRAENVPAAARQGNDV--AEGQAGAENENQLPNDGNQ 262
           PL++WLSQSM    +  +PPRP VR EN P  ARQ   V  AEGQA A+NE+  P DGNQ
Sbjct: 183 PLVQWLSQSMQRAAQPPRPPRPVVRPENAPPVARQNEIVALAEGQAVADNESHPPEDGNQ 242

Query: 263 AAGNENVVDPG-ANGGNQWWGIVKEIQMIVFGFITSLLPGFHNID 306
           A  NEN+V+PG  +GGN WWGIVKEIQM+VFGFITSLLPGFHN+D
Sbjct: 243 AVENENIVEPGEGDGGNNWWGIVKEIQMVVFGFITSLLPGFHNVD 287

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224087315|ref|XP_002308117.1| predicted protein [Populus trichocarpa] gi|222854093|gb|EEE91640.1| predicted protein [Populus trichocarpa]

 Score =  254 bits (649), Expect = 4e-65,   Method: Compositional matrix adjust.
 Identities = 157/253 (62%), Positives = 182/253 (71%), Gaps = 22/253 (8%)

Query: 70  MLPVMYPVALPGLYHLENQQQSNNRGAGIYAVPV----HPYSGIPSNTLIPLTYNVPTTR 125
           M P+MYP  +PGL  ++NQ+Q+N+ G GIYAV V     P +G+PS TLIPLT N+PT  
Sbjct: 1   MYPIMYPAPVPGLNPMQNQEQANH-GPGIYAVAVPQFMGPIAGLPSKTLIPLTLNIPTH- 58

Query: 126 PTTQAGPAGSEHGQAGQEQQQAARQ------RQVVVRRFQIAFHLDLMLILKLAAVIFVF 179
              +AG  G +     Q+Q Q  +Q      RQ+VVRRFQ+AF LDL LILKL AVIF+F
Sbjct: 59  ---EAGATGDQAQGGQQQQPQQQQQQHPAHPRQIVVRRFQVAFQLDLFLILKLVAVIFLF 115

Query: 180 NQDGSRLRLSALVLLASLIYLYQTGALTPLLRWLSQSMQ---RAAQPPRPAVRAENVPAA 236
           NQDGSR RL  LV  ASL+YLYQTGALTPL+RWLSQSMQ      +PPRPA R EN   A
Sbjct: 116 NQDGSRQRLLVLVFFASLVYLYQTGALTPLVRWLSQSMQRAAVPPRPPRPAARVENA-GA 174

Query: 237 ARQGNDV--AEGQAGAENENQLPNDGNQAAGNENVVDPGA-NGGNQWWGIVKEIQMIVFG 293
            RQ   +  AEGQAG ENEN+   DGNQAA NENV +PG  NGG++WWGIVKEIQMIVFG
Sbjct: 175 PRQNEYIALAEGQAGVENENRPTEDGNQAAENENVAEPGGDNGGHRWWGIVKEIQMIVFG 234

Query: 294 FITSLLPGFHNID 306
           FITSLLPGFHNID
Sbjct: 235 FITSLLPGFHNID 247

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449457191|ref|XP_004146332.1| PREDICTED: uncharacterized protein LOC101222970 [Cucumis sativus] gi|449502962|ref|XP_004161791.1| PREDICTED: uncharacterized protein LOC101223261 [Cucumis sativus]

 Score =  252 bits (643), Expect = 2e-64,   Method: Compositional matrix adjust.
 Identities = 162/285 (56%), Positives = 191/285 (67%), Gaps = 30/285 (10%)

Query: 46  EPSLKQPQVPASSGFPAFGNGEGGMLPVMYPVALPGLYHLENQQQSNNRGAGIYAVPVHP 105
           + +L+Q QVP    FP F NG   M+P+MYP  +PG    ENQ    NRGAGIYAVP  P
Sbjct: 22  DDNLEQSQVPKLPSFPTFPNGNVQMIPIMYPALVPGSASSENQ----NRGAGIYAVPSFP 77

Query: 106 YSGIP-----SNTLIPLTYNVPT-----TRPTTQAGPAGSEHGQA----GQEQQQAARQR 151
             G P     +N LIPLTY++PT      R + + G A  E+G+       +QQQ   QR
Sbjct: 78  SMGGPIIGMTTNNLIPLTYSIPTRSDTSNRTSPEGGSAVEENGRVEGQQQPQQQQPGPQR 137

Query: 152 QVVVRRFQIAFHLDLMLILKLAAVIFVFNQDGSRLRLSALVLLASLIYLYQTGALTPLLR 211
           QVVVRRFQIA  +DL+LILKLAAVIF+ +QDGSR RL  LV+ ASL+YLYQTGALTPL+R
Sbjct: 138 QVVVRRFQIAIQIDLLLILKLAAVIFLVHQDGSRQRLIVLVICASLVYLYQTGALTPLIR 197

Query: 212 WLSQSMQ---RAAQPPRPAVRAENV----PAAARQGND--VAEGQAGAENENQLPNDGNQ 262
           WLSQ MQ       PPRP VRA+N     PAA ++G +   AEGQ GAE ENQ  N+ N+
Sbjct: 198 WLSQGMQRAAAPPHPPRPGVRADNALVAPPAARQEGQNAAFAEGQPGAEVENQPVNEANR 257

Query: 263 AAGNENVVD--PGA-NGGNQWWGIVKEIQMIVFGFITSLLPGFHN 304
              NENV +  PGA NGG  WWG+VKEIQMIVFGFITSLLPGFHN
Sbjct: 258 GVENENVAEAGPGAGNGGLNWWGVVKEIQMIVFGFITSLLPGFHN 302

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297798988|ref|XP_002867378.1| hypothetical protein ARALYDRAFT_491758 [Arabidopsis lyrata subsp. lyrata] gi|297313214|gb|EFH43637.1| hypothetical protein ARALYDRAFT_491758 [Arabidopsis lyrata subsp. lyrata]

 Score =  251 bits (642), Expect = 2e-64,   Method: Compositional matrix adjust.
 Identities = 169/281 (60%), Positives = 193/281 (68%), Gaps = 20/281 (7%)

Query: 39  SSTTSPPEPSLKQPQVPASS-GFPAFGNGEGGMLPVMYPVALPGLYHLENQQQSNNRGAG 97
           SS    PE    +PQ PASS GF A+ NG+  M PV YP  +PG   ++ ++Q N RGAG
Sbjct: 10  SSGDKKPEDVGIKPQDPASSSGFRAYPNGDSPMYPVFYPGLVPGSNPVQYEEQMN-RGAG 68

Query: 98  IYAVPVHPY----SGIPSNTLIPLTYNVPTTRPTTQAGPAGSEHGQAGQEQQQA--ARQR 151
           IYAVPVH +    +G+PSN LIPLTYNVPTTRP  +A   G    QAGQ QQQ   A QR
Sbjct: 69  IYAVPVHQFGGHVAGLPSNYLIPLTYNVPTTRPNNEAETGGENQAQAGQGQQQQQPANQR 128

Query: 152 QVVVRRFQIAFHLDLMLILKLAAVIFVFNQDGSRLRLSALVLLASLIYLYQTGALTPLLR 211
            VV RRFQIAF LDL LILKLAAVIF+FNQDGSR RL+ LV+ A++IYLYQTGAL P +R
Sbjct: 129 HVVERRFQIAFQLDLFLILKLAAVIFLFNQDGSRQRLAVLVIFATIIYLYQTGALAPFVR 188

Query: 212 WLSQSMQRAA----QPPRPAVRAENVPAAARQGND--VAEGQAGAENENQLPNDGNQAAG 265
           WLSQ M RAA    +P RPA RA+N PAAA   N+  V EG+     EN+  N     A 
Sbjct: 189 WLSQGMHRAAVPPPRPHRPAARADNDPAAAVPLNENAVPEGE-----ENEADNANRANAN 243

Query: 266 NENVVDPGANGGNQWWGIVKEIQMIVFGFITSLLPGFHNID 306
               VD G N GNQWWGIVKEIQMIVFGFITSLLPGFHNI+
Sbjct: 244 ENENVDAG-NQGNQWWGIVKEIQMIVFGFITSLLPGFHNIE 283

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	306
TAIR|locus:2123889	291	AT4G29960 "AT4G29960" [Arabido	0.816	0.859	0.492	1.3e-52

TAIR|locus:2123889 AT4G29960 "AT4G29960" [Arabidopsis thaliana (taxid:3702)]

 Score = 545 (196.9 bits), Expect = 1.3e-52, P = 1.3e-52
 Identities = 133/270 (49%), Positives = 155/270 (57%)

Query:    51 QPQVPASS-GFPAFGNGEGGMLPVMYPVALPGLYHLENQQQSNNRGAGIYAVPVHPY--- 106
             +PQ PASS GF A+ NG+  M PV YP  +PG   ++ ++Q N RGAGIYAVPVH +   
Sbjct:    28 KPQDPASSSGFRAYPNGDSPMYPVFYPGLVPGSNPVQYEEQMN-RGAGIYAVPVHQFGGH 86

Query:   107 -SGIPSNTLIPLTYNVPTTRPTTQAGPAGSEHGXXXXXXXXX--XXXXXXXXXXXXIAFH 163
              +G+PSN LIPLTYNVPTTRP  +A   G                           IAF 
Sbjct:    87 VAGLPSNYLIPLTYNVPTTRPNNEAETGGENQAQAGQGQQQQLPANQRHVVERRFQIAFQ 146

Query:   164 LDLMLILKLAAVIFVFNQDGSXXXXXXXXXXXXXXXXXQTGALTPLLRWLSQSMXXXXXX 223
             LDL LILKLAAVIF+FNQDGS                 QTGAL P +RWLSQ M      
Sbjct:   147 LDLFLILKLAAVIFLFNQDGSRQRLAVLVIFATIIYLYQTGALAPFVRWLSQGMHRAAVP 206

Query:   224 XXX----XXXXENVPAAARQGND--VAEGQAG-AENENQLPNDGNQAAGNENVVDPGANG 276
                        +N PAAA   N+  V EG+   A+N N+   + N+   NENV D G N 
Sbjct:   207 PARPHRPAVRADNDPAAAVPLNENAVLEGEENEADNGNRARANANE---NENV-DAG-NQ 261

Query:   277 GNQWWGIVKEIQMIVFGFITSLLPGFHNID 306
             GNQWWGIVKEIQMIVFGFITSLLPGFHNI+
Sbjct:   262 GNQWWGIVKEIQMIVFGFITSLLPGFHNIE 291


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.315   0.135   0.409    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      306       211   0.00081  112 3  11 22  0.42    33
                                                     31  0.48    35


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  1
  No. of states in DFA:  584 (62 KB)
  Total size of DFA:  166 KB (2097 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  18.19u 0.09s 18.28t   Elapsed:  00:00:01
  Total cpu time:  18.19u 0.09s 18.28t   Elapsed:  00:00:01
  Start:  Mon May 20 22:42:20 2013   End:  Mon May 20 22:42:21 2013

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0005886 "plasma membrane" evidence=IDA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	AT4G29960	unknown protein; unknown protein; FUNCTIONS IN- molecular_function unknown; INVOLVED IN- biological_process unknown; LOCATED IN- plasma membrane; EXPRESSED IN- 23 plant structures; EXPRESSED DURING- 15 growth stages; Has 25 Blast hits to 25 proteins in 8 species- Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 2; Plants - 23; Viruses - 0; Other Eukaryotes - 0 (source- NCBI BLink). (291 aa)
		(Arabidopsis thaliana)
Predicted Functional Partners:
	AT1G68730	zinc finger (DNL type) family protein; zinc finger (DNL type) family protein; LOCATED IN- chlor [...] (170 aa)				•					0.538
	ZIP4	ZIP4 (ZINC TRANSPORTER 4 PRECURSOR); cation transmembrane transporter/ copper ion transmembrane [...] (408 aa)				•					0.538
	UBC30	UBC30 (ubiquitin-conjugating enzyme 30); ubiquitin-protein ligase; ubiquitin-conjugating enzyme [...] (148 aa)				•					0.537
	AT5G49060	DNAJ heat shock N-terminal domain-containing protein; DNAJ heat shock N-terminal domain-contain [...] (354 aa)				•					0.537
	AT2G15750	transposable element gene; similar to unknown protein [Arabidopsis thaliana] (TAIR-AT2G06845.1) [...] (280 aa)				•					0.537
	AT1G31370	unknown protein; FUNCTIONS IN- molecular_function unknown; INVOLVED IN- biological_process unkn [...] (193 aa)				•					0.537
	AT1G21060	unknown protein; unknown protein; FUNCTIONS IN- molecular_function unknown; INVOLVED IN- biolog [...] (505 aa)				•					0.537
	DRT101	DRT101 (DNA-DAMAGE-REPAIR/TOLERATION 101); intramolecular transferase, phosphotransferases / ma [...] (556 aa)				•					0.534
	AT1G73720	transducin family protein / WD-40 repeat family protein; transducin family protein / WD-40 repe [...] (511 aa)				•					0.534
	MBD8	MBD8; methyl-CpG binding; Protein containing methyl-CpG-binding domain.Has sequence similarity [...] (524 aa)				•					0.534

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	306
KOG4583	391	consensus Membrane-associated ER protein involved	98.48

>KOG4583 consensus Membrane-associated ER protein involved in stress response (contains ubiquitin-like domain) [Posttranslational modification, protein turnover, chaperones]

Probab=98.48  E-value=6.6e-07  Score=87.39  Aligned_cols=43  Identities=26%  Similarity=0.228  Sum_probs=35.6

Q ss_pred             HHH-HHHHHHHHhhheeeeCCCchhHHHHHHHHHHHHHHHHhcc
Q 021856          163 HLD-LMLILKLAAVIFVFNQDGSRLRLSALVLLASLIYLYQTGA  205 (306)
Q Consensus       163 ~~d-LWLiLKLa~fVf~Fsq~gSw~R~llLi~lAvlVYL~QTG~  205 (306)
                      |+| ..-+.|+++|+=+++-.+|.+|++|++++|++|||||.|.
T Consensus       262 wLd~~ysf~r~aillSilyfySSf~RfllVm~aal~iYl~q~g~  305 (391)
T KOG4583|consen  262 WLDWGYSFFRVAILLSILYFYSSFSRFLLVMGAALFIYLHQLGW  305 (391)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence            444 6778888877666666679999999999999999999994

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00