Citrus Sinensis ID: 021869

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300------
MATTASATRATLSSLSSLSLSLSLHSTPRLSFLSTAKLTRLPKLTLSTVLVRASESDKPNGIVFDDFNNPDEDAAVFDPPTPPEDYTPPPSFDELPMETEDEIAAAYEELYGPAYAGVSVLGNDVYVMDSKAKKTSAFGKTKKEKVKDGFEERVVQVRRVTKVVKGGKQLKFRAIVVVGDKKGQVGVGVAKAKEVIAAVQKSAVDARRNIVTVPMTKYLTFPHRSDGDFGAAKVMLRPASPGTGVIAGGAVRIVLEMAGVENALGKQLGSNNALNNARATVVAVQKMKQWREVSRERGIPMEELWK
cccccccccEEEEEEEccEEEEcccccccccccccccccccccccccEEEcccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHcccccccccccccHHHccHHHccccccccccccccccccEEEEEEEcccccccccccEEEEEEEEEEEcccccEEEEccccHHHHHHHHHHHHHHHHccEEEEccccccccEEEEEEcccEEEEEEEcccccEEEEccHHHHHHHHHcccHHHHcccccccHHHHHHHHHHHHHHcccHHHHHHHHcccHHHHcc
ccccHHHHHHHHHHHHHccEEEcccccccHcHcccccccccccccEEEEEEEcccccccccEEEccccccHHHccccccccccccccccccccccccccHHHHHHHHHHHccccccccEEccccEEEEccHccccccccccccccccccHHHHEEEEHHHHHEEccccEEEEEEEEEEEccccEEEcccccHHHHHHHHHHHHHHHHHHcEEEEccccccEcccEEEEccccEEEEcccccccEEEccHHHHHHHHHHcHHHHHHHHcccccHHHHHHHHHHHHHHcccHHHHHHHHcccHHHHHc
MATTASATRATLSSLSSLSLslslhstprlsflstakltrlpkltLSTVLVRasesdkpngivfddfnnpdedaavfdpptppedytpppsfdelpmeTEDEIAAAYEELYGPAYAGVSVLGNDvyvmdskakktsafgktkkekvkDGFEERVVQVRRVTKVVKGGKQLKFRAIVVVgdkkgqvgVGVAKAKEVIAAVQKSAVDARRnivtvpmtkyltfphrsdgdfgaakvmlrpaspgtgviaGGAVRIVLEMAGVENAlgkqlgsnnalnnARATVVAVQKMKQWREVSrergipmeelwk
mattasatratLSSLSSLSLSLSLHSTPRLSflstakltrlpklTLSTVlvrasesdkpngivfddfnnPDEDAAVFDPPTPPEDYTPPPSFDELPMETEDEIAAAYEELYGPAYAGVSVLGNDVYVMDSKakktsafgktkkekvkdgfeervvqvrrvtkvvkggkqlkfraivvvgdkkgqvgvgVAKAKEVIAAVQksavdarrnivtvpmtkyltfphrsdgdFGAAKVMLRPASPGTGVIAGGAVRIVLEMAGVENALGKqlgsnnalnnARATVVAVQKMKqwrevsrergipmeelwk
MattasatratlsslsslslslslhstprlsFLSTAKLTRLPKLTLSTVLVRASESDKPNGIVFDDFNNPDEDAAVFdpptppedytpppSFDELPMETEDEIAAAYEELYGPAYAGVSVLGNDVYVMDSKAKKTSAFGKTKKEKVKDGFEErvvqvrrvtkvvkggkqLKFRAIvvvgdkkgqvgvgvakakeviaavQKSAVDARRNIVTVPMTKYLTFPHRSDGDFGAAKVMLRPASPGTGVIAGGAVRIVLEMAGVENALGKQLGSNNALNNARATVVAVQKMKQWREVSRERGIPMEELWK
*****************************LSFLSTAKLTRLPKLTLSTVLVR**********V***************************************IAAAYEELYGPAYAGVSVLGNDVYVMD*******************GFEERVVQVRRVTKVVKGGKQLKFRAIVVVGDKKGQVGVGVAKAKEVIAAVQKSAVDARRNIVTVPMTKYLTFPHRSDGDFGAAKVMLRPASPGTGVIAGGAVRIVLEMAGVENALGKQLGSNNALNNARATVVAVQKMK*W****************
*************SLSSLSLSLSLHSTPRLSFLSTAKLTRLPKLTL**********************************T************************************************************************VVQVRRVTKVVKGGKQLKFRAIVVVGDKKGQVGVGVAKAKEVIAAVQKSAVDARRNIVTVPMTKYLTFPHRSDGDFGAAKVMLRPASPGTGVIAGGAVRIVLEMAGVENALGKQLGSNNALNNARATVVAVQKMKQWREVSRERGIPMEELWK
***************SSLSLSLSLHSTPRLSFLSTAKLTRLPKLTLSTVLVRASESDKPNGIVFDDFNNPDEDAAVFDPPTPPEDYTPPPSFDELPMETEDEIAAAYEELYGPAYAGVSVLGNDVYVMDSKAKKTSAFGKTKKEKVKDGFEERVVQVRRVTKVVKGGKQLKFRAIVVVGDKKGQVGVGVAKAKEVIAAVQKSAVDARRNIVTVPMTKYLTFPHRSDGDFGAAKVMLRPASPGTGVIAGGAVRIVLEMAGVENALGKQLGSNNALNNARATVVAVQKMKQWREVSRERG********
******************SLSLSLHSTPRLSFLSTAKLTRLPKLTLSTVLVRASESDKPNGIVFDDFNNPDEDAAVFDPPTPPEDYTPPPSFDELPMETEDEIAAAYEELYGPAYAGVSVLGNDVYVMDS*****************DGFEERVVQVRRVTKVVKGGKQLKFRAIVVVGDKKGQVGVGVAKAKEVIAAVQKSAVDARRNIVTVPMTKYLTFPHRSDGDFGAAKVMLRPASPGTGVIAGGAVRIVLEMAGVENALGKQLGSNNALNNARATVVAVQKMKQWREVSRERGIPM*****
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SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooo
SSSSSSSSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
SSSSSSSSSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MATTASATRATLSSLSSLSLSLSLHSTPRLSFLSTAKLTRLPKLTLSTVLVRASESDKPNGIVFDDFNNPDEDAAVFDPPTPPEDYTPPPSFDELPMETEDEIAAAYEELYGPAYAGVSVLGNDVYVMDSKAKKTSAFGKTKKEKVKDGFEERVVQVRRVTKVVKGGKQLKFRAIVVVGDKKGQVGVGVAKAKEVIAAVQKSAVDARRNIVTVPMTKYLTFPHRSDGDFGAAKVMLRPASPGTGVIAGGAVRIVLEMAGVENALGKQLGSNNALNNARATVVAVQKMKQWREVSRERGIPMEELWK
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query306 2.2.26 [Sep-21-2011]
Q9ST69308 30S ribosomal protein S5, N/A no 0.797 0.792 0.764 1e-107
P93014303 30S ribosomal protein S5, yes no 0.839 0.848 0.745 1e-105
Q1XDJ0174 30S ribosomal protein S5, N/A no 0.542 0.954 0.586 5e-51
P51298174 30S ribosomal protein S5, N/A no 0.542 0.954 0.586 1e-50
Q8YPJ5174 30S ribosomal protein S5 yes no 0.535 0.942 0.596 4e-50
Q3MFA5174 30S ribosomal protein S5 yes no 0.535 0.942 0.596 4e-50
B2ITN9175 30S ribosomal protein S5 yes no 0.535 0.937 0.584 1e-49
B1WQS7173 30S ribosomal protein S5 yes no 0.542 0.959 0.574 1e-49
B0C1E9177 30S ribosomal protein S5 yes no 0.542 0.937 0.604 2e-49
P73304173 30S ribosomal protein S5 N/A no 0.542 0.959 0.580 3e-49
>sp|Q9ST69|RR5_SPIOL 30S ribosomal protein S5, chloroplastic OS=Spinacia oleracea GN=rps5 PE=1 SV=1 Back     alignment and function desciption
 Score =  388 bits (997), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 188/246 (76%), Positives = 217/246 (88%), Gaps = 2/246 (0%)

Query: 62  IVFDDFNNPDEDAAVFDPPTPPEDYTPPPSFDELPMETEDEIAAAYEELYGPAYAGVSVL 121
           I F + +NPDE+   FDPP  PE Y PP + DE P E+E+EIA AYEELYG AY+G S+L
Sbjct: 64  ITFFEQDNPDEEI-TFDPPEKPEGYIPPRAVDEPPFESEEEIALAYEELYGAAYSGESLL 122

Query: 122 GNDVYVMDSKAKKTSAFG-KTKKEKVKDGFEERVVQVRRVTKVVKGGKQLKFRAIVVVGD 180
           GNDVY MDSK KK + FG K+KKEK++DGFEE VVQVRRVTKVVKGGK ++FRAIVVVGD
Sbjct: 123 GNDVYAMDSKIKKATGFGSKSKKEKIRDGFEENVVQVRRVTKVVKGGKHMRFRAIVVVGD 182

Query: 181 KKGQVGVGVAKAKEVIAAVQKSAVDARRNIVTVPMTKYLTFPHRSDGDFGAAKVMLRPAS 240
           KKGQVGVGV KAKEV++AVQK+AVDARRNI+TVPMTKYLTFPHR++ D+GAA+VMLRPA+
Sbjct: 183 KKGQVGVGVGKAKEVVSAVQKAAVDARRNIITVPMTKYLTFPHRNEADYGAARVMLRPAA 242

Query: 241 PGTGVIAGGAVRIVLEMAGVENALGKQLGSNNALNNARATVVAVQKMKQWREVSRERGIP 300
           PGTGVIAGGAVR VLEMAGVENALGKQLGSNNALNNARAT+VAVQ M+Q+ +V+R+RGIP
Sbjct: 243 PGTGVIAGGAVRTVLEMAGVENALGKQLGSNNALNNARATIVAVQTMRQFSDVARDRGIP 302

Query: 301 MEELWK 306
           MEELWK
Sbjct: 303 MEELWK 308
Binds directly to 16S ribosomal RNA. Involved in spectinomycin and neamine resistance and streptomycin independence.
Spinacia oleracea (taxid: 3562)
>sp|P93014|RR5_ARATH 30S ribosomal protein S5, chloroplastic OS=Arabidopsis thaliana GN=rps5 PE=1 SV=1 Back     alignment and function description
>sp|Q1XDJ0|RR5_PORYE 30S ribosomal protein S5, chloroplastic OS=Porphyra yezoensis GN=rps5 PE=3 SV=1 Back     alignment and function description
>sp|P51298|RR5_PORPU 30S ribosomal protein S5, chloroplastic OS=Porphyra purpurea GN=rps5 PE=3 SV=1 Back     alignment and function description
>sp|Q8YPJ5|RS5_NOSS1 30S ribosomal protein S5 OS=Nostoc sp. (strain PCC 7120 / UTEX 2576) GN=rpsE PE=3 SV=1 Back     alignment and function description
>sp|Q3MFA5|RS5_ANAVT 30S ribosomal protein S5 OS=Anabaena variabilis (strain ATCC 29413 / PCC 7937) GN=rpsE PE=3 SV=1 Back     alignment and function description
>sp|B2ITN9|RS5_NOSP7 30S ribosomal protein S5 OS=Nostoc punctiforme (strain ATCC 29133 / PCC 73102) GN=rpsE PE=3 SV=1 Back     alignment and function description
>sp|B1WQS7|RS5_CYAA5 30S ribosomal protein S5 OS=Cyanothece sp. (strain ATCC 51142) GN=rpsE PE=3 SV=1 Back     alignment and function description
>sp|B0C1E9|RS5_ACAM1 30S ribosomal protein S5 OS=Acaryochloris marina (strain MBIC 11017) GN=rpsE PE=3 SV=1 Back     alignment and function description
>sp|P73304|RS5_SYNY3 30S ribosomal protein S5 OS=Synechocystis sp. (strain PCC 6803 / Kazusa) GN=rpsE PE=3 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query306
255536781309 30S ribosomal protein S5, putative [Rici 0.911 0.902 0.743 1e-114
356521382300 PREDICTED: 30S ribosomal protein S5, chl 0.846 0.863 0.778 1e-113
449433828307 PREDICTED: 30S ribosomal protein S5, chl 0.823 0.820 0.812 1e-112
356548700316 PREDICTED: 30S ribosomal protein S5, chl 0.830 0.803 0.785 1e-111
224077096311 predicted protein [Populus trichocarpa] 0.924 0.909 0.740 1e-111
297826847304 ribosomal protein S5 family protein [Ara 0.892 0.898 0.721 1e-108
75313851308 RecName: Full=30S ribosomal protein S5, 0.797 0.792 0.764 1e-105
15226167303 30S ribosomal protein S5 [Arabidopsis th 0.839 0.848 0.745 1e-103
388504456303 unknown [Medicago truncatula] 0.882 0.891 0.697 5e-99
116787540328 unknown [Picea sitchensis] 0.699 0.652 0.768 7e-89
>gi|255536781|ref|XP_002509457.1| 30S ribosomal protein S5, putative [Ricinus communis] gi|223549356|gb|EEF50844.1| 30S ribosomal protein S5, putative [Ricinus communis] Back     alignment and taxonomy information
 Score =  416 bits (1070), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 217/292 (74%), Positives = 243/292 (83%), Gaps = 13/292 (4%)

Query: 26  STPRLSFLS----------TAKLTRLPKLTLSTVLVRASESDKPNGIVFDDFNNPDEDAA 75
           STPR S L           + +LT+   L+   + +  + S   +   FD+ N   ED  
Sbjct: 20  STPRFSLLKPIINKPFSSFSPRLTQFLSLSSQPITITTASSSDIDTTFFDNLN--PEDDI 77

Query: 76  VFDPPTPPEDYTPPPSFDELPMETEDEIAAAYEELYGPAYAGVSVLGNDVYVMDSKAKKT 135
           VFDPPTPPED+ PPPSFDE PMETE+EIAAAYE+LYG  Y+GVS LGNDVYVMDSK KKT
Sbjct: 78  VFDPPTPPEDFVPPPSFDEEPMETEEEIAAAYEDLYGAGYSGVSYLGNDVYVMDSKVKKT 137

Query: 136 SAFG-KTKKEKVKDGFEERVVQVRRVTKVVKGGKQLKFRAIVVVGDKKGQVGVGVAKAKE 194
           + FG K K+EK++DGFEERVVQVRRVTKVVKGGKQL FRAIVVVGDK+GQVGVGV KAKE
Sbjct: 138 TGFGSKGKREKIRDGFEERVVQVRRVTKVVKGGKQLHFRAIVVVGDKQGQVGVGVGKAKE 197

Query: 195 VIAAVQKSAVDARRNIVTVPMTKYLTFPHRSDGDFGAAKVMLRPASPGTGVIAGGAVRIV 254
           VIAAVQKSAV+ARRNI+TVPMTKYLTFPHRSDGD+GAAKVMLRPASPGTGVIAGGAVRIV
Sbjct: 198 VIAAVQKSAVNARRNIITVPMTKYLTFPHRSDGDYGAAKVMLRPASPGTGVIAGGAVRIV 257

Query: 255 LEMAGVENALGKQLGSNNALNNARATVVAVQKMKQWREVSRERGIPMEELWK 306
           LEMAGVENALGKQ+GS NALNNARATVVAVQKM+Q+ +V+RERGIPMEELWK
Sbjct: 258 LEMAGVENALGKQIGSKNALNNARATVVAVQKMRQFSDVARERGIPMEELWK 309

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|356521382|ref|XP_003529335.1| PREDICTED: 30S ribosomal protein S5, chloroplastic-like [Glycine max] Back     alignment and taxonomy information
>gi|449433828|ref|XP_004134699.1| PREDICTED: 30S ribosomal protein S5, chloroplastic-like [Cucumis sativus] gi|449479289|ref|XP_004155560.1| PREDICTED: 30S ribosomal protein S5, chloroplastic-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|356548700|ref|XP_003542738.1| PREDICTED: 30S ribosomal protein S5, chloroplastic-like [Glycine max] Back     alignment and taxonomy information
>gi|224077096|ref|XP_002305129.1| predicted protein [Populus trichocarpa] gi|118487850|gb|ABK95748.1| unknown [Populus trichocarpa] gi|222848093|gb|EEE85640.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|297826847|ref|XP_002881306.1| ribosomal protein S5 family protein [Arabidopsis lyrata subsp. lyrata] gi|297327145|gb|EFH57565.1| ribosomal protein S5 family protein [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|75313851|sp|Q9ST69.1|RR5_SPIOL RecName: Full=30S ribosomal protein S5, chloroplastic; Flags: Precursor gi|188036206|pdb|3BBN|E Chain E, Homology Model For The Spinach Chloroplast 30s Subunit Fitted To 9.4a Cryo-Em Map Of The 70s Chlororibosome. gi|5725342|emb|CAA63650.1| ribosomal protein S5 [Spinacia oleracea] Back     alignment and taxonomy information
>gi|15226167|ref|NP_180936.1| 30S ribosomal protein S5 [Arabidopsis thaliana] gi|75101015|sp|P93014.1|RR5_ARATH RecName: Full=30S ribosomal protein S5, chloroplastic; Flags: Precursor gi|1707008|gb|AAC69132.1| 30S ribosomal protein S5 [Arabidopsis thaliana] gi|15450886|gb|AAK96714.1| 30S ribosomal protein S5 [Arabidopsis thaliana] gi|20259882|gb|AAM13288.1| 30S ribosomal protein S5 [Arabidopsis thaliana] gi|21593322|gb|AAM65271.1| 30S ribosomal protein S5 [Arabidopsis thaliana] gi|330253794|gb|AEC08888.1| 30S ribosomal protein S5 [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|388504456|gb|AFK40294.1| unknown [Medicago truncatula] Back     alignment and taxonomy information
>gi|116787540|gb|ABK24549.1| unknown [Picea sitchensis] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query306
TAIR|locus:2057645303 EMB3113 "EMBRYO DEFECTIVE 3113 0.843 0.851 0.591 3.3e-70
TIGR_CMR|BA_0127166 BA_0127 "ribosomal protein S5" 0.339 0.626 0.485 1.1e-21
TIGR_CMR|CHY_2292167 CHY_2292 "ribosomal protein S5 0.346 0.634 0.485 6.3e-21
UNIPROTKB|P66574220 rpsE "30S ribosomal protein S5 0.336 0.468 0.480 9.2e-20
TIGR_CMR|SO_0248167 SO_0248 "ribosomal protein S5" 0.339 0.622 0.457 5.8e-18
TIGR_CMR|CPS_0618169 CPS_0618 "ribosomal protein S5 0.339 0.615 0.457 9.5e-18
TIGR_CMR|GSU_2840162 GSU_2840 "ribosomal protein S5 0.326 0.617 0.42 2.5e-17
UNIPROTKB|Q9KP01167 rpsE "30S ribosomal protein S5 0.339 0.622 0.438 6.7e-17
TIGR_CMR|VC_2579167 VC_2579 "ribosomal protein S5" 0.339 0.622 0.438 6.7e-17
UNIPROTKB|P0A7W1167 rpsE "30S ribosomal subunit pr 0.339 0.622 0.428 1.1e-16
TAIR|locus:2057645 EMB3113 "EMBRYO DEFECTIVE 3113" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 711 (255.3 bits), Expect = 3.3e-70, P = 3.3e-70
 Identities = 155/262 (59%), Positives = 178/262 (67%)

Query:    47 STVLVRASESDKPNGIVFDDFNNPDEDA-AVFXXXXXXXXXXXXXSFDELPMETEDEIAA 105
             S  LV+AS +D    I F+D   P+  A  VF              FDE   ETE+EIA 
Sbjct:    44 SLTLVKASSTDTET-IFFED-ETPEITANVVFDPPIAPEGFVSPPYFDEGSDETEEEIAT 101

Query:   106 AYEELYGPAYAGVSVLGNDVYVMDSKAKKTSAFG-KTKKEKVKDGFEEXXXXXXXXXXXX 164
             A+EELYGPAY+G S+LG D+YVMDSK KK+S  G K KK+K++DGFEE            
Sbjct:   102 AFEELYGPAYSGESMLGKDIYVMDSKHKKSSGIGGKPKKDKIRDGFEERVVQVRRVTKVV 161

Query:   165 XXXXXLKFRAIXXXXXXXXXXXXXXXXXXXXXXXXQKSAVDARRNIVTVPMTKYLTFPHR 224
                  LKFRAI                        QKSA+DARRNIV VPMTKY TFPHR
Sbjct:   162 KGGKQLKFRAIVVVGDKQGNVGVGCAKAKEVVAAVQKSAIDARRNIVQVPMTKYSTFPHR 221

Query:   225 SDGDFGAAKVMLRPASPGTGVIAGGAVRIVLEMAGVENALGKQLGSNNALNNARATVVAV 284
             S+GD+GAAKVMLRPASPGTGVIAGGAVRIVLEMAGVENALGKQLGSNNALNNARAT+ AV
Sbjct:   222 SEGDYGAAKVMLRPASPGTGVIAGGAVRIVLEMAGVENALGKQLGSNNALNNARATLAAV 281

Query:   285 QKMKQWREVSRERGIPMEELWK 306
             Q+M+Q+R+V++ERGIPMEELWK
Sbjct:   282 QQMRQFRDVAQERGIPMEELWK 303
GO:0003723 "RNA binding" evidence=IEA
GO:0003735 "structural constituent of ribosome" evidence=IEA;ISS
GO:0005622 "intracellular" evidence=ISS
GO:0005840 "ribosome" evidence=ISS
GO:0006412 "translation" evidence=IEA;ISS
GO:0009507 "chloroplast" evidence=ISM;IDA
GO:0009579 "thylakoid" evidence=IDA
GO:0005634 "nucleus" evidence=IDA
GO:0009409 "response to cold" evidence=IEP;RCA
GO:0009535 "chloroplast thylakoid membrane" evidence=IDA
GO:0009570 "chloroplast stroma" evidence=IDA
GO:0046686 "response to cadmium ion" evidence=IEP
GO:0016020 "membrane" evidence=IDA
GO:0009534 "chloroplast thylakoid" evidence=IDA
GO:0042742 "defense response to bacterium" evidence=RCA
GO:0045036 "protein targeting to chloroplast" evidence=RCA
TIGR_CMR|BA_0127 BA_0127 "ribosomal protein S5" [Bacillus anthracis str. Ames (taxid:198094)] Back     alignment and assigned GO terms
TIGR_CMR|CHY_2292 CHY_2292 "ribosomal protein S5" [Carboxydothermus hydrogenoformans Z-2901 (taxid:246194)] Back     alignment and assigned GO terms
UNIPROTKB|P66574 rpsE "30S ribosomal protein S5" [Mycobacterium tuberculosis (taxid:1773)] Back     alignment and assigned GO terms
TIGR_CMR|SO_0248 SO_0248 "ribosomal protein S5" [Shewanella oneidensis MR-1 (taxid:211586)] Back     alignment and assigned GO terms
TIGR_CMR|CPS_0618 CPS_0618 "ribosomal protein S5" [Colwellia psychrerythraea 34H (taxid:167879)] Back     alignment and assigned GO terms
TIGR_CMR|GSU_2840 GSU_2840 "ribosomal protein S5" [Geobacter sulfurreducens PCA (taxid:243231)] Back     alignment and assigned GO terms
UNIPROTKB|Q9KP01 rpsE "30S ribosomal protein S5" [Vibrio cholerae O1 biovar El Tor str. N16961 (taxid:243277)] Back     alignment and assigned GO terms
TIGR_CMR|VC_2579 VC_2579 "ribosomal protein S5" [Vibrio cholerae O1 biovar El Tor (taxid:686)] Back     alignment and assigned GO terms
UNIPROTKB|P0A7W1 rpsE "30S ribosomal subunit protein S5" [Escherichia coli K-12 (taxid:83333)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
P93014RR5_ARATHNo assigned EC number0.74520.83980.8481yesno
Q9ST69RR5_SPIOLNo assigned EC number0.76420.79730.7922N/Ano

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
fgenesh2_kg.4__1392__AT2G33800.1
annotation not avaliable (304 aa)
(Arabidopsis lyrata)
Predicted Functional Partners:
fgenesh2_kg.6__3575__AT4G01310.1
annotation not avaliable (264 aa)
• ••  • 0.979
fgenesh2_kg.1__3924__AT1G48350.1
annotation not avaliable (170 aa)
• ••  • 0.974
fgenesh2_kg.1__466__AT1G05190.1
annotation not avaliable (223 aa)
•  •  • 0.972
scaffold_303456.1
annotation not avaliable (125 aa)
•  •• • 0.971
fgenesh2_kg.4__2465__AT2G43030.1
annotation not avaliable (271 aa)
•  •  • 0.968
fgenesh2_kg.2__679__ATCG00800.1
annotation not avaliable (160 aa)
• ••• • 0.966
fgenesh2_kg.1__3276__ATCG00800.1
annotation not avaliable (160 aa)
• ••• • 0.965
fgenesh1_pg.C_scaffold_1061000001
annotation not avaliable (103 aa)
•  •• • 0.964
fgenesh2_kg.2__2068__AT1G77750.1
annotation not avaliable (154 aa)
•  •• • 0.964
scaffold_201123.1
annotation not avaliable (134 aa)
•  •• • 0.949

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query306
PRK00550168 PRK00550, rpsE, 30S ribosomal protein S5; Validate 3e-78
COG0098181 COG0098, RpsE, Ribosomal protein S5 [Translation, 5e-69
TIGR01021154 TIGR01021, rpsE_bact, ribosomal protein S5, bacter 5e-66
CHL00138143 CHL00138, rps5, ribosomal protein S5; Validated 9e-60
pfam0371974 pfam03719, Ribosomal_S5_C, Ribosomal protein S5, C 1e-26
pfam0033367 pfam00333, Ribosomal_S5, Ribosomal protein S5, N-t 9e-25
PRK04044211 PRK04044, rps5p, 30S ribosomal protein S5P; Review 5e-24
TIGR01020212 TIGR01020, rpsE_arch, ribosomal protein S5(archaea 2e-21
PTZ00070257 PTZ00070, PTZ00070, 40S ribosomal protein S2; Prov 4e-16
>gnl|CDD|234790 PRK00550, rpsE, 30S ribosomal protein S5; Validated Back     alignment and domain information 
 Score =  235 bits (601), Expect = 3e-78
 Identities = 88/168 (52%), Positives = 119/168 (70%), Gaps = 1/168 (0%)

Query: 139 GKTKKEKVKDGFEERVVQVRRVTKVVKGGKQLKFRAIVVVGDKKGQVGVGVAKAKEVIAA 198
              + EK K   EE+VV + RVTKVVKGG++  F A+VVVGD KG+VG G  KA+EV  A
Sbjct: 2   RMMRIEKNKLELEEKVVAINRVTKVVKGGRRFSFSALVVVGDGKGRVGFGYGKAREVPEA 61

Query: 199 VQKSAVDARRNIVTVPMTKYLTFPHRSDGDFGAAKVMLRPASPGTGVIAGGAVRIVLEMA 258
           ++K+  DA++N++ VP+    T PH   G FGAAKV+L+PAS GTGVIAGGAVR VLE+A
Sbjct: 62  IRKAVEDAKKNMIKVPLVG-GTIPHEVIGKFGAAKVLLKPASEGTGVIAGGAVRAVLELA 120

Query: 259 GVENALGKQLGSNNALNNARATVVAVQKMKQWREVSRERGIPMEELWK 306
           GV++ L K LGSNN +N  RAT  A+++++   EV+ +RG  +EE+  
Sbjct: 121 GVKDVLAKSLGSNNPINVVRATFDALKQLRSPEEVAAKRGKSVEEILG 168

Length = 168
>gnl|CDD|223176 COG0098, RpsE, Ribosomal protein S5 [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>gnl|CDD|130093 TIGR01021, rpsE_bact, ribosomal protein S5, bacterial/organelle type Back     alignment and domain information
>gnl|CDD|177060 CHL00138, rps5, ribosomal protein S5; Validated Back     alignment and domain information
>gnl|CDD|190724 pfam03719, Ribosomal_S5_C, Ribosomal protein S5, C-terminal domain Back     alignment and domain information
>gnl|CDD|144065 pfam00333, Ribosomal_S5, Ribosomal protein S5, N-terminal domain Back     alignment and domain information
>gnl|CDD|235213 PRK04044, rps5p, 30S ribosomal protein S5P; Reviewed Back     alignment and domain information
>gnl|CDD|233235 TIGR01020, rpsE_arch, ribosomal protein S5(archaeal type)/S2(eukaryote cytosolic type) Back     alignment and domain information
>gnl|CDD|240255 PTZ00070, PTZ00070, 40S ribosomal protein S2; Provisional Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 306
PTZ00070257 40S ribosomal protein S2; Provisional 100.0
TIGR01020212 rpsE_arch ribosomal protein S5(archaeal type)/S2(e 100.0
PRK04044211 rps5p 30S ribosomal protein S5P; Reviewed 100.0
COG0098181 RpsE Ribosomal protein S5 [Translation, ribosomal 100.0
PRK00550168 rpsE 30S ribosomal protein S5; Validated 100.0
TIGR01021154 rpsE_bact ribosomal protein S5, bacterial/organell 100.0
KOG0877213 consensus 40S ribosomal protein S2/30S ribosomal p 100.0
CHL00138143 rps5 ribosomal protein S5; Validated 100.0
KOG2646396 consensus Ribosomal protein S5 [Translation, ribos 100.0
PF0371974 Ribosomal_S5_C: Ribosomal protein S5, C-terminal d 99.95
PF0033367 Ribosomal_S5: Ribosomal protein S5, N-terminal dom 99.9
>PTZ00070 40S ribosomal protein S2; Provisional Back     alignment and domain information 
Probab=100.00  E-value=2.4e-58  Score=426.45  Aligned_cols=180  Identities=31%  Similarity=0.464  Sum_probs=172.2

Q ss_pred             CCCcccccCCCCcccccchhhhhh-ccCC-CCccccccCCc------ceeEEEEeeeeeeecCCeeEEEEEEEEecCCCC
Q 021869          112 GPAYAGVSVLGNDVYVMDSKAKKT-SAFG-KTKKEKVKDGF------EERVVQVRRVTKVVKGGKQLKFRAIVVVGDKKG  183 (306)
Q Consensus       112 ~rgwsg~t~lG~~V~~~~~k~~~~-~~fs-~~ke~~i~d~f------~~~VL~i~rV~K~TkgGR~~rf~AlVvVGNgnG  183 (306)
                      +.+|.|.|+|||+|+++++++.++ |.|+ |++|.+|+|.|      .++||+|+||||||++||++||+|||||||+||
T Consensus        34 ~~~W~P~TklGrlVk~gki~s~eei~~~~lpikE~eIvd~ll~~~~L~eeVl~I~rVqK~TkgGrr~rF~AlVVVGd~nG  113 (257)
T PTZ00070         34 EKEWVPVTKLGRLVKAGKITSLEEIFLFSIPIKEYQIVDHFFAESKLKDEVMKIMPVQKQTSAGQRTRFKAFVVVGDGNG  113 (257)
T ss_pred             cCceeeccchhhhhhcCccccHHHHHhcCCCccchhhHHHHccCccchheEEEEeeeEEEecCCcEEEEEEEEEEeCCCC
Confidence            457999999999999999999988 9999 99999999766      479999999999999999999999999999999


Q ss_pred             ceeecccchhhHHHHHHHHHHHHHhcceEeccc-------CCcccceeeeeeeceEEEEEeecCCCCceeechHHHHHHH
Q 021869          184 QVGVGVAKAKEVIAAVQKSAVDARRNIVTVPMT-------KYLTFPHRSDGDFGAAKVMLRPASPGTGVIAGGAVRIVLE  256 (306)
Q Consensus       184 ~vG~GvGKakev~~AIrKA~~~Ak~nLi~V~~~-------~~hTIphdv~gk~gstkV~L~PAP~GtGLva~~vik~Ile  256 (306)
                      +||+|+|||+||.+||+||+++|++||++|+++       ++|||||+|+|||||++|+|+|||+|+||+|++++++||+
T Consensus       114 ~VGlG~gKakEV~~AIrKAi~~AK~nii~V~rgyW~~~~g~~hTIp~~V~GK~GSv~V~L~PAP~GtGivAg~~vk~VLe  193 (257)
T PTZ00070        114 HIGLGAKVAKEVATAIRGAIIAAKLNLVPVRRGYWGNKIGEPHTVPMKVTGKCGSVRVRLVPAPRGTGIVAAPTPKKILE  193 (257)
T ss_pred             cEecceeechhHHHHHHHHHHHHHhCeEEEecccccccCCCCCCeeeeEEEEeCeEEEEEEeCCCCccEEeCcHHHHHHH
Confidence            999999999999999999999999999999983       6799999999999999999999999999999999999999


Q ss_pred             HhCccceeeeeccCC-chhhHHHHHHHHHHccCCHH
Q 021869          257 MAGVENALGKQLGSN-NALNNARATVVAVQKMKQWR  291 (306)
Q Consensus       257 lAGIkD~~aKv~GSt-n~lNvaKAtf~AL~k~~S~~  291 (306)
                      ||||+|||+|++||+ |++|++||||+||.++|++.
T Consensus       194 lAGIkDv~tks~GsTrt~~N~aKATf~AL~~t~~~~  229 (257)
T PTZ00070        194 FAGVEDVFTSSRGKTRTRGNFLKATFYALRKTYGFL  229 (257)
T ss_pred             HcCccceeeecccCCCChHHHHHHHHHHHHHHhccc
Confidence            999999999999987 78999999999999998754

>TIGR01020 rpsE_arch ribosomal protein S5(archaeal type)/S2(eukaryote cytosolic type) Back     alignment and domain information
>PRK04044 rps5p 30S ribosomal protein S5P; Reviewed Back     alignment and domain information
>COG0098 RpsE Ribosomal protein S5 [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>PRK00550 rpsE 30S ribosomal protein S5; Validated Back     alignment and domain information
>TIGR01021 rpsE_bact ribosomal protein S5, bacterial/organelle type Back     alignment and domain information
>KOG0877 consensus 40S ribosomal protein S2/30S ribosomal protein S5 [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>CHL00138 rps5 ribosomal protein S5; Validated Back     alignment and domain information
>KOG2646 consensus Ribosomal protein S5 [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>PF03719 Ribosomal_S5_C: Ribosomal protein S5, C-terminal domain; InterPro: IPR005324 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms Back     alignment and domain information
>PF00333 Ribosomal_S5: Ribosomal protein S5, N-terminal domain; InterPro: IPR013810 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query306
3bbn_E308 Homology Model For The Spinach Chloroplast 30s Subu 2e-75
3ohc_E160 Structure Of The Thermus Thermophilus Ribosome Comp 1e-18
1i94_E161 Crystal Structures Of The Small Ribosomal Subunit W 1e-18
1fka_E162 Structure Of Functionally Activated Small Ribosomal 1e-18
3fic_E151 T. Thermophilus 70s Ribosome In Complex With Mrna, 1e-18
1pns_E150 Crystal Structure Of A Streptomycin Dependent Ribos 1e-18
1pkp_A150 The Structure Of Ribosomal Protein S5 Reveals Sites 5e-17
1qd7_D145 Partial Model For 30s Ribosomal Subunit Length = 14 5e-17
1eg0_B148 Fitting Of Components With Known Structure Into An 6e-17
1p6g_E166 Real Space Refined Coordinates Of The 30s Subunit F 5e-16
1vs5_E167 Crystal Structure Of The Bacterial Ribosome From Es 5e-16
3e1a_S159 Structure Of The 30s Subunit And The Trnas Of E. Co 9e-15
3fih_E150 Ternary Complex-Bound E.Coli 70s Ribosome. This Ent 9e-15
2gy9_E148 Structure Of The 30s Subunit Of A Pre-Translocation 4e-14
3iz6_E274 Localization Of The Small Subunit Ribosomal Protein 8e-04
3izb_E254 Localization Of The Small Subunit Ribosomal Protein 8e-04
>pdb|3BBN|E Chain E, Homology Model For The Spinach Chloroplast 30s Subunit Fitted To 9.4a Cryo-Em Map Of The 70s Chlororibosome Length = 308 Back     alignment and structure 
Iteration: 1

 Score =  279 bits (713), Expect = 2e-75,   Method: Compositional matrix adjust.
 Identities = 144/246 (58%), Positives = 171/246 (69%), Gaps = 2/246 (0%)
Query: 62  IVFDDFNNPDEDAAVFXXXXXXXXXXXXXSFDELPMETEDEIAAAYEELYGPAYAGVSVL 121
           I F + +NPDE+   F             + DE P E+E+EIA AYEELYG AY+G S+L
Sbjct: 64  ITFFEQDNPDEEI-TFDPPEKPEGYIPPRAVDEPPFESEEEIALAYEELYGAAYSGESLL 122
Query: 122 GNDVYVMDSKAKKTSAFG-KTKKEKVKDGFEEXXXXXXXXXXXXXXXXXLKFRAIXXXXX 180
           GNDVY MDSK KK + FG K+KKEK++DGFEE                 ++FRAI     
Sbjct: 123 GNDVYAMDSKIKKATGFGSKSKKEKIRDGFEENVVQVRRVTKVVKGGKHMRFRAIVVVGD 182
Query: 181 XXXXXXXXXXXXXXXXXXXQKSAVDARRNIVTVPMTKYLTFPHRSDGDFGAAKVMLRPAS 240
                              QK+AVDARRNI+TVPMTKYLTFPHR++ D+GAA+VMLRPA+
Sbjct: 183 KKGQVGVGVGKAKEVVSAVQKAAVDARRNIITVPMTKYLTFPHRNEADYGAARVMLRPAA 242
Query: 241 PGTGVIAGGAVRIVLEMAGVENALGKQLGSNNALNNARATVVAVQKMKQWREVSRERGIP 300
           PGTGVIAGGAVR VLEMAGVENALGKQLGSNNALNNARAT+VAVQ M+Q+ +V+R+RGIP
Sbjct: 243 PGTGVIAGGAVRTVLEMAGVENALGKQLGSNNALNNARATIVAVQTMRQFSDVARDRGIP 302
Query: 301 MEELWK 306
           MEELWK
Sbjct: 303 MEELWK 308
>pdb|3OHC|E Chain E, Structure Of The Thermus Thermophilus Ribosome Complexed With Erythromycin. This File Contains The 30s Subunit Of One 70s Ribosome. The Entire Crystal Structure Contains Two 70s Ribosomes. Length = 160 Back     alignment and structure
>pdb|1I94|E Chain E, Crystal Structures Of The Small Ribosomal Subunit With Tetracycline, Edeine And If3 Length = 161 Back     alignment and structure
>pdb|1FKA|E Chain E, Structure Of Functionally Activated Small Ribosomal Subunit At 3.3 A Resolution Length = 162 Back     alignment and structure
>pdb|3FIC|E Chain E, T. Thermophilus 70s Ribosome In Complex With Mrna, Trnas And Ef- Tu.Gdp.Kirromycin Ternary Complex, Fitted To A 6.4 A Cryo-Em Map. This File Contains The 30s Subunit And The Ligands Length = 151 Back     alignment and structure
>pdb|1PNS|E Chain E, Crystal Structure Of A Streptomycin Dependent Ribosome From E. Coli, 30s Subunit Of 70s Ribosome. This File, 1pns, Contains The 30s Subunit, Two Trnas, And One Mrna Molecule. The 50s Ribosomal Subunit Is In File 1pnu. Length = 150 Back     alignment and structure
>pdb|1PKP|A Chain A, The Structure Of Ribosomal Protein S5 Reveals Sites Of Interaction With 16s Rrna Length = 150 Back     alignment and structure
>pdb|1QD7|D Chain D, Partial Model For 30s Ribosomal Subunit Length = 145 Back     alignment and structure
>pdb|1P6G|E Chain E, Real Space Refined Coordinates Of The 30s Subunit Fitted Into The Low Resolution Cryo-Em Map Of The Ef-G.Gtp State Of E. Coli 70s Ribosome Length = 166 Back     alignment and structure
>pdb|1VS5|E Chain E, Crystal Structure Of The Bacterial Ribosome From Escherichia Coli In Complex With The Antibiotic Kasugamyin At 3.5a Resolution. This File Contains The 30s Subunit Of One 70s Ribosome. The Entire Crystal Structure Contains Two 70s Ribosomes And Is Described In Remark 400. Length = 167 Back     alignment and structure
>pdb|3E1A|S Chain S, Structure Of The 30s Subunit And The Trnas Of E. Coli Ribosome In Pre- Accommodation State Length = 159 Back     alignment and structure
>pdb|3FIH|E Chain E, Ternary Complex-Bound E.Coli 70s Ribosome. This Entry Consists Of The 30s Subunit, Trnas And The Ternary Complex. Length = 150 Back     alignment and structure
>pdb|2GY9|E Chain E, Structure Of The 30s Subunit Of A Pre-Translocational E. Coli Ribosome Obtained By Fitting Atomic Models For Rna And Protein Components Into Cryo-Em Map Emd-1056 Length = 148 Back     alignment and structure
>pdb|3IZ6|E Chain E, Localization Of The Small Subunit Ribosomal Proteins Into A 5.5 A Cryo-Em Map Of Triticum Aestivum Translating 80s Ribosome Length = 274 Back     alignment and structure
>pdb|3IZB|E Chain E, Localization Of The Small Subunit Ribosomal Proteins Into A 6.1 A Cryo-Em Map Of Saccharomyces Cerevisiae Translating 80s Ribosome Length = 254 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query306
3bbn_E308 Ribosomal protein S5; small ribosomal subunit, spi 1e-113
2vqe_E162 30S ribosomal protein S5; tRNA-binding, rRNA-bindi 1e-70
3i1m_E167 30S ribosomal protein S5; ribosome structure, prot 2e-70
3r8n_E150 30S ribosomal protein S5; protein biosynthesis, RN 3e-67
1pkp_A150 Ribosomal protein S5; 2.80A {Geobacillus stearothe 1e-65
3u5c_C254 Guanine nucleotide-binding protein subunit beta-L 5e-52
3iz6_E274 40S ribosomal protein S2 (S5P); eukaryotic ribosom 2e-50
2xzm_E296 Ribosomal protein S5 containing protein; ribosome, 6e-46
>3bbn_E Ribosomal protein S5; small ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea} Length = 308 Back     alignment and structure
 Score =  329 bits (845), Expect = e-113
 Identities = 199/306 (65%), Positives = 239/306 (78%), Gaps = 9/306 (2%)

Query: 2   ATTASATRATLSSLSSLSLSLSLHSTPRLSFLSTAKLTRLPKLTLSTVLVRASESDKPNG 61
           AT+ +     +    + +  LSL S+ +  FLS   L+           ++  + D    
Sbjct: 11  ATSLTTLHRRIPLFPTTTTLLSLSSSSKPLFLS---LSSTRSFPTHLYCIKKDDID---- 63

Query: 62  IVFDDFNNPDEDAAVFDPPTPPEDYTPPPSFDELPMETEDEIAAAYEELYGPAYAGVSVL 121
           I F + +NPDE+   FDPP  PE Y PP + DE P E+E+EIA AYEELYG AY+G S+L
Sbjct: 64  ITFFEQDNPDEEI-TFDPPEKPEGYIPPRAVDEPPFESEEEIALAYEELYGAAYSGESLL 122

Query: 122 GNDVYVMDSKAKKTSAFG-KTKKEKVKDGFEERVVQVRRVTKVVKGGKQLKFRAIVVVGD 180
           GNDVY MDSK KK + FG K+KKEK++DGFEE VVQVRRVTKVVKGGK ++FRAIVVVGD
Sbjct: 123 GNDVYAMDSKIKKATGFGSKSKKEKIRDGFEENVVQVRRVTKVVKGGKHMRFRAIVVVGD 182

Query: 181 KKGQVGVGVAKAKEVIAAVQKSAVDARRNIVTVPMTKYLTFPHRSDGDFGAAKVMLRPAS 240
           KKGQVGVGV KAKEV++AVQK+AVDARRNI+TVPMTKYLTFPHR++ D+GAA+VMLRPA+
Sbjct: 183 KKGQVGVGVGKAKEVVSAVQKAAVDARRNIITVPMTKYLTFPHRNEADYGAARVMLRPAA 242

Query: 241 PGTGVIAGGAVRIVLEMAGVENALGKQLGSNNALNNARATVVAVQKMKQWREVSRERGIP 300
           PGTGVIAGGAVR VLEMAGVENALGKQLGSNNALNNARAT+VAVQ M+Q+ +V+R+RGIP
Sbjct: 243 PGTGVIAGGAVRTVLEMAGVENALGKQLGSNNALNNARATIVAVQTMRQFSDVARDRGIP 302

Query: 301 MEELWK 306
           MEELWK
Sbjct: 303 MEELWK 308
>2vqe_E 30S ribosomal protein S5; tRNA-binding, rRNA-binding, metal-binding, zinc-finger, translation; HET: TM2 PAR; 2.5A {Thermus thermophilus} SCOP: i.1.1.3 PDB: 1fka_E 1gix_H* 1hnw_E* 1hnx_E* 1hnz_E* 1hr0_E 1ibk_E* 1ibl_E* 1ibm_E 1jgo_H* 1jgp_H* 1jgq_H* 1ml5_H* 1xmo_E* 1xmq_E* 1xnq_E* 1xnr_E* 1yl4_H 2b64_E* 2b9m_E* ... Length = 162 Back     alignment and structure
>3i1m_E 30S ribosomal protein S5; ribosome structure, protein-RNA complex, ribonucleoprotein, ribosomal protein, RNA-binding, rRNA-binding, antibiotic resistance; 3.19A {Escherichia coli k-12} PDB: 1vs7_E* 1vs5_E 3i1o_E 3i1q_E 3i1s_E 3i1z_E 3i21_E 3izv_I* 3izw_I* 3kc4_E 3or9_E 3ora_E 3sfs_E* 3uoq_E* Length = 167 Back     alignment and structure
>1pkp_A Ribosomal protein S5; 2.80A {Geobacillus stearothermophilus} SCOP: d.14.1.1 d.50.1.2 PDB: 1eg0_B 1dv4_E* 1qd7_D Length = 150 Back     alignment and structure
>3u5c_C Guanine nucleotide-binding protein subunit beta-L protein (ASC1, RACK1); translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_E 3o30_B 3o2z_B 3u5g_C 3jyv_E* 1s1h_E Length = 254 Back     alignment and structure
>3iz6_E 40S ribosomal protein S2 (S5P); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 2zkq_e 1s1h_E Length = 274 Back     alignment and structure
>2xzm_E Ribosomal protein S5 containing protein; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_E Length = 296 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query306
3bbn_E308 Ribosomal protein S5; small ribosomal subunit, spi 100.0
3j20_F236 30S ribosomal protein S5P; archaea, archaeal, KINK 100.0
3u5c_C254 Guanine nucleotide-binding protein subunit beta-L 100.0
2vqe_E162 30S ribosomal protein S5; tRNA-binding, rRNA-bindi 100.0
3i1m_E167 30S ribosomal protein S5; ribosome structure, prot 100.0
3r8n_E150 30S ribosomal protein S5; protein biosynthesis, RN 100.0
2xzm_E296 Ribosomal protein S5 containing protein; ribosome, 100.0
1pkp_A150 Ribosomal protein S5; 2.80A {Geobacillus stearothe 100.0
3iz6_E274 40S ribosomal protein S2 (S5P); eukaryotic ribosom 100.0
>3bbn_E Ribosomal protein S5; small ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea} Back     alignment and structure
Probab=100.00  E-value=7.3e-100  Score=716.98  Aligned_cols=287  Identities=67%  Similarity=1.011  Sum_probs=157.1

Q ss_pred             cccceeeeeeccCCcccccccccccC-------CCC------CcceeeEEeccCCCCCCceeecCCCCCCCCccccCCCC
Q 021869           15 LSSLSLSLSLHSTPRLSFLSTAKLTR-------LPK------LTLSTVLVRASESDKPNGIVFDDFNNPDEDAAVFDPPT   81 (306)
Q Consensus        15 ~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (306)
                      |||||+  +.++++|+++++|..+..       .+|      +.+|++++|++++|+| |+||||+ ||| ++++||||.
T Consensus         8 ~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~-~~~-~~~~~~~~~   82 (308)
T 3bbn_E            8 TPSATS--LTTLHRRIPLFPTTTTLLSLSSSSKPLFLSLSSTRSFPTHLYCIKKDDID-ITFFEQD-NPD-EEITFDPPE   82 (308)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             cccchh--heeccccccccCCcccccCchhhcCccccccccccccceEEEEeeccccc-ceeecCC-Ccc-cceEecCCC
Confidence            566665  667889999988876522       122      3478999999999999 9999999 899 999999999


Q ss_pred             CCCCCCCCCCCCCCCCCCHHHHHHHHHhhcCCCcccccCCCCcccccchhhhhhccCC-CCccccccCCcceeEEEEeee
Q 021869           82 PPEDYTPPPSFDELPMETEDEIAAAYEELYGPAYAGVSVLGNDVYVMDSKAKKTSAFG-KTKKEKVKDGFEERVVQVRRV  160 (306)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~rgwsg~t~lG~~V~~~~~k~~~~~~fs-~~ke~~i~d~f~~~VL~i~rV  160 (306)
                      |||||||||+||++++||||||+||||+|+||||+|++|+||+|++|++|+++.++|+ ++++++++++|+++||+|+||
T Consensus        83 ~~e~~~~~~~~~~~~~~~e~e~~~~~e~l~ergwsg~TklGrlVk~~kik~~~~~~fsl~ike~ei~d~f~ekVv~I~RV  162 (308)
T 3bbn_E           83 KPEGYIPPRAVDEPPFESEEEIALAYEELYGAAYSGESLLGNDVYAMDSKIKKATGFGSKSKKEKIRDGFEENVVQVRRV  162 (308)
T ss_dssp             --------------------------------------------------------------------CCEEEEEEEECC
T ss_pred             CccccCCCcCcccccccCHHHHHHHHHHhhccCcccccccCccCCCccccchhhhccccccccccccccceeeEEEEeee
Confidence            9999999999999999999999999999999999999999999999999998889999 888888999999999999999


Q ss_pred             eeeecCCeeEEEEEEEEecCCCCceeecccchhhHHHHHHHHHHHHHhcceEecccCCcccceeeeeeeceEEEEEeecC
Q 021869          161 TKVVKGGKQLKFRAIVVVGDKKGQVGVGVAKAKEVIAAVQKSAVDARRNIVTVPMTKYLTFPHRSDGDFGAAKVMLRPAS  240 (306)
Q Consensus       161 ~K~TkgGR~~rf~AlVvVGNgnG~vG~GvGKakev~~AIrKA~~~Ak~nLi~V~~~~~hTIphdv~gk~gstkV~L~PAP  240 (306)
                      ||||++||++||+|||||||+||+||+|+|||+||.+||+||+++|++||++|+++++|||||+|.||||+++|+|+|||
T Consensus       163 ~KvTkgGRr~rF~AlVVVGDgnG~VGlG~GKAkEV~~AIrKAi~~Akknli~V~r~~~hTIph~V~Gk~Gs~~V~L~PAP  242 (308)
T 3bbn_E          163 TKVVKGGKHMRFRAIVVVGDKKGQVGVGVGKAKEVVSAVQKAAVDARRNIITVPMTKYLTFPHRNEADYGAARVMLRPAA  242 (308)
T ss_dssp             EEEETTEEEECCEEEEEEECSSSEEEEEEEECSSHHHHHHHHHHTTTTSCEECCCCSSSBCSSCEEEEETTEEEEEEECC
T ss_pred             EEEecCCcEEEEEEEEEEeCCCceEeeeeeecchHHHHHHHHHHHHHhCeEEEecCCCcccceEEEEEEeeEEEEEEECC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCceeechHHHHHHHHhCccceeeeeccCCchhhHHHHHHHHHHccCCHHHHHHHhCCCcccccC
Q 021869          241 PGTGVIAGGAVRIVLEMAGVENALGKQLGSNNALNNARATVVAVQKMKQWREVSRERGIPMEELWK  306 (306)
Q Consensus       241 ~GtGLva~~vik~IlelAGIkD~~aKv~GStn~lNvaKAtf~AL~k~~S~~eiA~~rG~~vvE~~~  306 (306)
                      +|+||+|++++|+||+||||+||++|++||+|++|++||||+||+++++++|||++||++++|+++
T Consensus       243 ~GTGIiAg~~vr~VLelAGIkDv~tKs~GStn~lN~vKATf~AL~k~~s~~eVA~~RGk~v~ei~~  308 (308)
T 3bbn_E          243 PGTGVIAGGAVRTVLEMAGVENALGKQLGSNNALNNARATIVAVQTMRQFSDVARDRGIPMEELWK  308 (308)
T ss_dssp             TTCCEECCTTTHHHHTTTTCCBEEEEEEECCCTTTTTTHHHHHHHTCCCHHHHHTTSCCCSCCCCC
T ss_pred             CCCceecCcHHHHHHHhcCcceEEEeccCCCCchhHHHHHHHHHHhcCCHHHHHHHcCCCHHHhcC
Confidence            999999999999999999999999999999999999999999999999999999999999999986
>3j20_F 30S ribosomal protein S5P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus} Back     alignment and structure
>3u5c_C Guanine nucleotide-binding protein subunit beta-L protein (ASC1, RACK1); translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_E 3o30_B 3o2z_B 3u5g_C 3jyv_E* 1s1h_E Back     alignment and structure
>2vqe_E 30S ribosomal protein S5; tRNA-binding, rRNA-binding, metal-binding, zinc-finger, translation; HET: TM2 PAR; 2.5A {Thermus thermophilus} SCOP: i.1.1.3 PDB: 1fka_E 1gix_H* 1hnw_E* 1hnx_E* 1hnz_E* 1hr0_E 1ibk_E* 1ibl_E* 1ibm_E 1jgo_H* 1jgp_H* 1jgq_H* 1ml5_H* 1xmo_E* 1xmq_E* 1xnq_E* 1xnr_E* 1yl4_H 2b64_E* 2b9m_E* ... Back     alignment and structure
>3i1m_E 30S ribosomal protein S5; ribosome structure, protein-RNA complex, ribonucleoprotein, ribosomal protein, RNA-binding, rRNA-binding, antibiotic resistance; 3.19A {Escherichia coli k-12} PDB: 1vs7_E* 1vs5_E 3i1o_E 3i1q_E 3i1s_E 3i1z_E 3i21_E 3izv_I* 3izw_I* 3kc4_E 3or9_E 3ora_E 3sfs_E* 3uoq_E* 4gaq_E* 4gas_E* Back     alignment and structure
>2xzm_E Ribosomal protein S5 containing protein; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_E Back     alignment and structure
>1pkp_A Ribosomal protein S5; 2.80A {Geobacillus stearothermophilus} SCOP: d.14.1.1 d.50.1.2 PDB: 1eg0_B 1dv4_E* 1qd7_D Back     alignment and structure
>3iz6_E 40S ribosomal protein S2 (S5P); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 2zkq_e Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 306
d2uube269 d.50.1.2 (E:5-73) Ribosomal S5 protein, N-terminal 2e-26
d1pkpa274 d.50.1.2 (A:4-77) Ribosomal S5 protein, N-terminal 9e-26
d2qale269 d.50.1.2 (E:9-77) Ribosomal S5 protein, N-terminal 9e-26
d2qale181 d.14.1.1 (E:78-158) Ribosomal protein S5, C-termin 9e-26
d2uube181 d.14.1.1 (E:74-154) Ribosomal protein S5, C-termin 8e-25
d1pkpa171 d.14.1.1 (A:78-148) Ribosomal protein S5, C-termin 3e-23
d1xwdc1242 c.10.2.7 (C:18-259) Follicle-stimulating hormone r 0.002
>d2uube2 d.50.1.2 (E:5-73) Ribosomal S5 protein, N-terminal domain {Thermus thermophilus [TaxId: 274]} Length = 69 Back     information, alignment and structure

class: Alpha and beta proteins (a+b)
fold: dsRBD-like
superfamily: dsRNA-binding domain-like
family: Ribosomal S5 protein, N-terminal domain
domain: Ribosomal S5 protein, N-terminal domain
species: Thermus thermophilus [TaxId: 274]

 Score = 97.0 bits (242), Expect = 2e-26
 Identities = 33/66 (50%), Positives = 50/66 (75%)

Query: 150 FEERVVQVRRVTKVVKGGKQLKFRAIVVVGDKKGQVGVGVAKAKEVIAAVQKSAVDARRN 209
           FEE+++ +RR  ++  GG++ +F A+VVVGD++G+VG+G  KA EV  AVQK+   ARRN
Sbjct: 2   FEEKMILIRRTARMQAGGRRFRFGALVVVGDRQGRVGLGFGKAPEVPLAVQKAGYYARRN 61

Query: 210 IVTVPM 215
           +V VP+
Sbjct: 62  MVEVPL 67
>d1pkpa2 d.50.1.2 (A:4-77) Ribosomal S5 protein, N-terminal domain {Bacillus stearothermophilus [TaxId: 1422]} Length = 74 Back     information, alignment and structure
>d2qale2 d.50.1.2 (E:9-77) Ribosomal S5 protein, N-terminal domain {Escherichia coli [TaxId: 562]} Length = 69 Back     information, alignment and structure
>d2qale1 d.14.1.1 (E:78-158) Ribosomal protein S5, C-terminal domain {Escherichia coli [TaxId: 562]} Length = 81 Back     information, alignment and structure
>d2uube1 d.14.1.1 (E:74-154) Ribosomal protein S5, C-terminal domain {Thermus thermophilus [TaxId: 274]} Length = 81 Back     information, alignment and structure
>d1pkpa1 d.14.1.1 (A:78-148) Ribosomal protein S5, C-terminal domain {Bacillus stearothermophilus [TaxId: 1422]} Length = 71 Back     information, alignment and structure
>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 242 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query306
d2qale181 Ribosomal protein S5, C-terminal domain {Escherich 99.97
d2uube181 Ribosomal protein S5, C-terminal domain {Thermus t 99.97
d1pkpa171 Ribosomal protein S5, C-terminal domain {Bacillus 99.96
d2uube269 Ribosomal S5 protein, N-terminal domain {Thermus t 99.92
d2qale269 Ribosomal S5 protein, N-terminal domain {Escherich 99.91
d1pkpa274 Ribosomal S5 protein, N-terminal domain {Bacillus 99.9
>d2qale1 d.14.1.1 (E:78-158) Ribosomal protein S5, C-terminal domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: Ribosomal protein S5 domain 2-like
superfamily: Ribosomal protein S5 domain 2-like
family: Translational machinery components
domain: Ribosomal protein S5, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=99.97  E-value=6e-32  Score=210.40  Aligned_cols=81  Identities=44%  Similarity=0.662  Sum_probs=79.8

Q ss_pred             cccceeeeeeeceEEEEEeecCCCCceeechHHHHHHHHhCccceeeeeccCCchhhHHHHHHHHHHccCCHHHHHHHhC
Q 021869          219 LTFPHRSDGDFGAAKVMLRPASPGTGVIAGGAVRIVLEMAGVENALGKQLGSNNALNNARATVVAVQKMKQWREVSRERG  298 (306)
Q Consensus       219 hTIphdv~gk~gstkV~L~PAP~GtGLva~~vik~IlelAGIkD~~aKv~GStn~lNvaKAtf~AL~k~~S~~eiA~~rG  298 (306)
                      .||||+++||||+++|+|+|||+|+||+|++.+|+||++|||+||++|++||+|++|++||||+||++++|++|+|++||
T Consensus         1 gTIph~v~gk~gs~kV~l~PAp~GtGliag~~vr~ilelaGI~Dv~~K~~GS~n~~N~vkAt~~aL~~~~t~~~iA~~RG   80 (81)
T d2qale1           1 GTLQHPVKGVHTGSRVFMQPASEGTGIIAGGAMRAVLEVAGVHNVLAKAYGSTNPINVVRATIDGLENMNSPEMVAAKRG   80 (81)
T ss_dssp             TBCSSCBCCEETTEEEEBCBCCTTSCEECCHHHHHHHHHHTCCSEECEEEECCCHHHHHHHHHHHHTTCCCHHHHHHHTT
T ss_pred             CcccEEEEEEECcEEEEEEECCCCCccccCHHHHHHHHHcCcceeEeEcCCCCCHHHHHHHHHHHHHcCCCHHHHHHHhC
Confidence            49999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             C
Q 021869          299 I  299 (306)
Q Consensus       299 ~  299 (306)
                      +
T Consensus        81 k   81 (81)
T d2qale1          81 K   81 (81)
T ss_dssp             C
T ss_pred             c
Confidence            6
>d2uube1 d.14.1.1 (E:74-154) Ribosomal protein S5, C-terminal domain {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1pkpa1 d.14.1.1 (A:78-148) Ribosomal protein S5, C-terminal domain {Bacillus stearothermophilus [TaxId: 1422]} Back     information, alignment and structure
>d2uube2 d.50.1.2 (E:5-73) Ribosomal S5 protein, N-terminal domain {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d2qale2 d.50.1.2 (E:9-77) Ribosomal S5 protein, N-terminal domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1pkpa2 d.50.1.2 (A:4-77) Ribosomal S5 protein, N-terminal domain {Bacillus stearothermophilus [TaxId: 1422]} Back     information, alignment and structure