Citrus Sinensis ID: 021914

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-----
MFGLKKSPLRVGRHNSVDPGHQVSSRSNPFDSDDELDNKQTLKPSKRTSSEPNLTTSKVSTNPFDDDDIKENTAVSSYSLTSAARNKYRNDFRDSGGLENQSVQELEDYAVYKAEDTTKQVHGCLKIAEEIREDATKTLVSLHQQGEQITRTHYTAASIDHDLSRGEKLLGSLGGMFSRTWKPKKTRPIMGPVITRDDPVQRRGNHLEQREKLGLNNTSKGQSNTRAQLPEPTDAYQKIEVEKSKQDDALSELSGILGELKNMATDMGSEIDRQNKSLDYLDDDVDVLNIRVKDANLRGRRLLGK
cccccccccccccccccccccccccccccccccHHHcccccccccccccccccccccccccccccccHHccccccccccccHHHHHccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccHHHccccHHHHHHHHccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccHHccccccccccccccccccccccccccHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
mfglkksplrvgrhnsvdpghqvssrsnpfdsddeldnkqtlkpskrtssepnlttskvstnpfddddikentavsSYSLTSAARNKYrndfrdsgglenqsvqELEDYAVykaedttkqVHGCLKIAEEIREDATKTLVSLHQQGEQITRTHYTAASIDHDLSRGEKLLGslggmfsrtwkpkktrpimgpvitrddpvqrrgnhleqreklglnntskgqsntraqlpeptdayQKIEVEKSKQDDALSELSGILGELKNMATdmgseidrqnksldyldddvdvLNIRVKDANLRGRRLLGK
mfglkksplrvgrhnsvdpghqvssrsnpfdsddeldnkqtlkpskrtssepnlttskvstnpfddddikeNTAVssysltsaarnkYRNDFRDSGGLENQSVQELEDYAVYKAEDTTKQVHGCLKIAEEIREDATKTLVSLHQQGEQITRTHYTAASIDHDLSRGEKLLGSLGgmfsrtwkpkktrpimgpvitrddpvqrrgnhleqreklglnntskgqsntraqlpeptDAYQKIEVEKSKQDDALSELSGILGELKNMATDMGSEIDRQNksldyldddvdvlnirvkdanlrgrrllgk
MFGLKKSPLRVGRHNSVDPGHQVSSRSNPFDSDDELDNKQTLKPSKRTSSEPNLTTSKVSTNPFDDDDIKENTAVSSYSLTSAARNKYRNDFRDSGGLENQSVQELEDYAVYKAEDTTKQVHGCLKIAEEIREDATKTLVSLHQQGEQITRTHYTAASIDHDLSRGEKLLGSLGGMFSRTWKPKKTRPIMGPVITRDDPVQRRGNHLEQREKLGLNNTSKGQSNTRAQLPEPTDAYQKIEVEKSKQDDALSELSGILGELKNMATDMGSEIDRQNKSldyldddvdvlNIRVKDANLRGRRLLGK
*********************************************************************************************************LEDYAVYKAEDTTKQVHGCLKIAEEIREDATKTLVSLHQQGEQITRTHYTAASIDHDLSRGEKLLGSLGGMFSRTW*************************************************************************************************DYLDDDVDVLNIRVKD***********
*********************************************************************************************************************************EIREDATKTLVSLHQQGEQITRTHYTAA*******RGEKLLGSLGGMFSRTWKPKKTRPIMGPVITRDD*************************************YQKIEVEKSKQDDALSELSGILGELKNMATDMGSEIDRQNKSLDYLDDDVDVLNIRVKDANLRGRRLLG*
MFGLKKSPLRVGR**************************QTLK************TSKVSTNPFDDDDIKENTAVSSYSLTSAARNKYRNDFRDSGGLENQSVQELEDYAVYKAEDTTKQVHGCLKIAEEIREDATKTLVSLHQQGEQITRTHYTAASIDHDLSRGEKLLGSLGGMFSRTWKPKKTRPIMGPVITRDDPVQRRGNHLEQREKLGLNNT***********PEPTDAYQKIEVEKSKQDDALSELSGILGELKNMATDMGSEIDRQNKSLDYLDDDVDVLNIRVKDANLRGRRLLGK
*****************************************************************************************************SVQELEDYAVYKAEDTTKQVHGCLKIAEEIREDATKTLVSLHQQGEQITRTHYTAASIDHDLSRGEKLLGSLGGMFSRTWKPK*************************************************DAYQKIEVEKSKQDDALSELSGILGELKNMATDMGSEIDRQNKSLDYLDDDVDVLNIRVKDANLRGRRLLGK
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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SSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MFGLKKSPLRVGRHNSVDPGHQVSSRSNPFDSDDELDNKQTLKPSKRTSSEPNLTTSKVSTNPFDDDDIKENTAVSSYSLTSAARNKYRNDFRDSGGLENQSVQELEDYAVYKAEDTTKQVHGCLKIAEEIREDATKTLVSLHQQGEQITRTHYTAASIDHDLSRGEKLLGSLGGMFSRTWKPKKTRPIMGPVITRDDPVQRRGNHLEQREKLGLNNTSKGQSNTRAQLPEPTDAYQKIEVEKSKQDDALSELSGILGELKNMATDMGSEIDRQNKSLDYLDDDVDVLNIRVKDANLRGRRLLGK
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query305 2.2.26 [Sep-21-2011]
Q9S7P9300 SNAP25 homologous protein yes no 0.980 0.996 0.686 1e-113
Q9LMG8263 Putative SNAP25 homologou no no 0.786 0.912 0.581 1e-77
Q9SD96251 SNAP25 homologous protein no no 0.777 0.944 0.559 3e-71
P60881206 Synaptosomal-associated p yes no 0.626 0.927 0.263 4e-11
Q5R1X1206 Synaptosomal-associated p yes no 0.626 0.927 0.263 4e-11
P60879206 Synaptosomal-associated p yes no 0.626 0.927 0.263 4e-11
P60877206 Synaptosomal-associated p yes no 0.626 0.927 0.263 4e-11
P60880206 Synaptosomal-associated p yes no 0.626 0.927 0.263 4e-11
P60878206 Synaptosomal-associated p yes no 0.626 0.927 0.263 4e-11
Q17QQ3206 Synaptosomal-associated p yes no 0.626 0.927 0.263 4e-11
>sp|Q9S7P9|SNP33_ARATH SNAP25 homologous protein SNAP33 OS=Arabidopsis thaliana GN=SNAP33 PE=1 SV=1 Back     alignment and function desciption
 Score =  409 bits (1051), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 210/306 (68%), Positives = 247/306 (80%), Gaps = 7/306 (2%)

Query: 1   MFGLKKSPLRVGRHNSVDPGHQVSSRSNPFDSDDELDNKQTLKPSKRTSSEPNLTTSKVS 60
           MFGL+KSP  + +HNSVD     SS+ NPFDSDDE DNK TL PSKRT+SEP+L      
Sbjct: 1   MFGLRKSPANLPKHNSVD---LKSSKPNPFDSDDESDNKHTLNPSKRTTSEPSLADM--- 54

Query: 61  TNPFDDDDI-KENTAVSSYSLTSAARNKYRNDFRDSGGLENQSVQELEDYAVYKAEDTTK 119
           TNPF  + + K +++ S  SL S ++ +Y+N+FRDSGG+ENQSVQELE YAVYKAE+TTK
Sbjct: 55  TNPFGGERVQKGDSSSSKQSLFSNSKYQYKNNFRDSGGIENQSVQELEGYAVYKAEETTK 114

Query: 120 QVHGCLKIAEEIREDATKTLVSLHQQGEQITRTHYTAASIDHDLSRGEKLLGSLGGMFSR 179
            V GCLK+AE+IR DAT+TLV LH QGEQITRTH+ A  IDHDLSRGEKLLGSLGGMFS+
Sbjct: 115 SVQGCLKVAEDIRSDATRTLVMLHDQGEQITRTHHKAVEIDHDLSRGEKLLGSLGGMFSK 174

Query: 180 TWKPKKTRPIMGPVITRDDPVQRRGNHLEQREKLGLNNTSKGQSNTRAQLPEPTDAYQKI 239
           TWKPKKTRPI GPV+TRDD   RR NHLE+REKLGLN+  +GQS TR  LPE  DAYQ++
Sbjct: 175 TWKPKKTRPINGPVVTRDDSPTRRVNHLEKREKLGLNSAPRGQSRTREPLPESADAYQRV 234

Query: 240 EVEKSKQDDALSELSGILGELKNMATDMGSEIDRQNKSLDYLDDDVDVLNIRVKDANLRG 299
           E+EK+KQDD LS+LS ILGELKNMA DMGSEI++QNK LD+L DDVD LN RV+ +N RG
Sbjct: 235 EMEKAKQDDGLSDLSDILGELKNMAVDMGSEIEKQNKGLDHLHDDVDELNFRVQQSNQRG 294

Query: 300 RRLLGK 305
           RRLLGK
Sbjct: 295 RRLLGK 300
t-SNARE involved in diverse vesicle trafficking and membrane fusion processes, including cell plate formation. May function in the secretory pathway.
Arabidopsis thaliana (taxid: 3702)
>sp|Q9LMG8|SNP30_ARATH Putative SNAP25 homologous protein SNAP30 OS=Arabidopsis thaliana GN=SNAP30 PE=3 SV=1 Back     alignment and function description
>sp|Q9SD96|SNP29_ARATH SNAP25 homologous protein SNAP29 OS=Arabidopsis thaliana GN=SNAP29 PE=2 SV=1 Back     alignment and function description
>sp|P60881|SNP25_RAT Synaptosomal-associated protein 25 OS=Rattus norvegicus GN=Snap25 PE=1 SV=1 Back     alignment and function description
>sp|Q5R1X1|SNP25_PANTR Synaptosomal-associated protein 25 OS=Pan troglodytes GN=SNAP25 PE=2 SV=1 Back     alignment and function description
>sp|P60879|SNP25_MOUSE Synaptosomal-associated protein 25 OS=Mus musculus GN=Snap25 PE=1 SV=1 Back     alignment and function description
>sp|P60877|SNP25_MACMU Synaptosomal-associated protein 25 OS=Macaca mulatta GN=SNAP25 PE=2 SV=1 Back     alignment and function description
>sp|P60880|SNP25_HUMAN Synaptosomal-associated protein 25 OS=Homo sapiens GN=SNAP25 PE=1 SV=1 Back     alignment and function description
>sp|P60878|SNP25_CHICK Synaptosomal-associated protein 25 OS=Gallus gallus GN=SNAP25 PE=1 SV=1 Back     alignment and function description
>sp|Q17QQ3|SNP25_BOVIN Synaptosomal-associated protein 25 OS=Bos taurus GN=SNAP25 PE=1 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query305
224135327305 predicted protein [Populus trichocarpa] 1.0 1.0 0.727 1e-126
255547273305 synaptosomal associated protein, putativ 1.0 1.0 0.734 1e-124
312282529302 unnamed protein product [Thellungiella h 0.990 1.0 0.701 1e-120
329025170306 SNAP33 [Solanum chacoense] 1.0 0.996 0.696 1e-119
297793679300 synaptosomal-associated protein 33 [Arab 0.980 0.996 0.689 1e-113
15240163300 SNAP25 homologous protein SNAP33 [Arabid 0.980 0.996 0.686 1e-112
225457299305 PREDICTED: SNAP25 homologous protein SNA 0.996 0.996 0.679 1e-111
356511915300 PREDICTED: SNAP25 homologous protein SNA 0.980 0.996 0.669 1e-111
21553460300 snap25a [Arabidopsis thaliana] 0.980 0.996 0.683 1e-110
388506658305 unknown [Lotus japonicus] 1.0 1.0 0.665 1e-110
>gi|224135327|ref|XP_002322041.1| predicted protein [Populus trichocarpa] gi|222869037|gb|EEF06168.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
 Score =  456 bits (1173), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 222/305 (72%), Positives = 252/305 (82%)

Query: 1   MFGLKKSPLRVGRHNSVDPGHQVSSRSNPFDSDDELDNKQTLKPSKRTSSEPNLTTSKVS 60
           MFG KKSPL++ +H  VDP     SR NPFDSDDE D K+TLK S++TSSEPNLT    S
Sbjct: 1   MFGSKKSPLKISKHTRVDPECPAPSRPNPFDSDDEFDTKKTLKTSRKTSSEPNLTAPCFS 60

Query: 61  TNPFDDDDIKENTAVSSYSLTSAARNKYRNDFRDSGGLENQSVQELEDYAVYKAEDTTKQ 120
           TNPFD D+ + ++A S+Y L SAAR KY NDFRDSGGLENQSVQELE YAVYKAE+TTK 
Sbjct: 61  TNPFDGDEERGSSASSTYFLASAARQKYNNDFRDSGGLENQSVQELESYAVYKAEETTKS 120

Query: 121 VHGCLKIAEEIREDATKTLVSLHQQGEQITRTHYTAASIDHDLSRGEKLLGSLGGMFSRT 180
           V+GCLKIAE++RE AT+TL++LHQQGEQITRTH  A  IDHDLSRGEKLLGSLGGMFS+T
Sbjct: 121 VNGCLKIAEDMREGATRTLITLHQQGEQITRTHDAAVEIDHDLSRGEKLLGSLGGMFSKT 180

Query: 181 WKPKKTRPIMGPVITRDDPVQRRGNHLEQREKLGLNNTSKGQSNTRAQLPEPTDAYQKIE 240
           WKPKK RPI GPVITRD   QRRGN LEQREKLGLN   KGQS+ R  LPEPT+A+QK+E
Sbjct: 181 WKPKKNRPITGPVITRDASPQRRGNQLEQREKLGLNPAPKGQSSMRTPLPEPTNAFQKVE 240

Query: 241 VEKSKQDDALSELSGILGELKNMATDMGSEIDRQNKSLDYLDDDVDVLNIRVKDANLRGR 300
           +EKSKQDD+LS+LS ILGELKNMA DMG+EIDRQ  SLD+L +DVD LN RV+ AN RGR
Sbjct: 241 LEKSKQDDSLSDLSNILGELKNMAVDMGTEIDRQTNSLDHLQNDVDELNYRVRGANQRGR 300

Query: 301 RLLGK 305
           RLLGK
Sbjct: 301 RLLGK 305

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|255547273|ref|XP_002514694.1| synaptosomal associated protein, putative [Ricinus communis] gi|223546298|gb|EEF47800.1| synaptosomal associated protein, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|312282529|dbj|BAJ34130.1| unnamed protein product [Thellungiella halophila] Back     alignment and taxonomy information
>gi|329025170|gb|AEB71568.1| SNAP33 [Solanum chacoense] Back     alignment and taxonomy information
>gi|297793679|ref|XP_002864724.1| synaptosomal-associated protein 33 [Arabidopsis lyrata subsp. lyrata] gi|297310559|gb|EFH40983.1| synaptosomal-associated protein 33 [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|15240163|ref|NP_200929.1| SNAP25 homologous protein SNAP33 [Arabidopsis thaliana] gi|27805727|sp|Q9S7P9.1|SNP33_ARATH RecName: Full=SNAP25 homologous protein SNAP33; Short=AtSNAP33; AltName: Full=Snap25a; AltName: Full=Synaptosomal-associated protein SNAP25-like 1; Short=SNAP-25-like protein 1 gi|5731763|emb|CAB52582.1| SNAP33 protein [Arabidopsis thaliana] gi|5731764|emb|CAB52583.1| SNAP33B protein [Arabidopsis thaliana] gi|9759467|dbj|BAB10383.1| SNAP25A protein [Arabidopsis thaliana] gi|16323047|gb|AAL15258.1| AT5g61210/maf19_210 [Arabidopsis thaliana] gi|18072736|emb|CAC79615.1| SNAP-25 like protein [Arabidopsis thaliana] gi|22655332|gb|AAM98258.1| At5g61210/maf19_210 [Arabidopsis thaliana] gi|332010053|gb|AED97436.1| SNAP25 homologous protein SNAP33 [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|225457299|ref|XP_002284486.1| PREDICTED: SNAP25 homologous protein SNAP33 [Vitis vinifera] Back     alignment and taxonomy information
>gi|356511915|ref|XP_003524667.1| PREDICTED: SNAP25 homologous protein SNAP33-like [Glycine max] Back     alignment and taxonomy information
>gi|21553460|gb|AAM62553.1| snap25a [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|388506658|gb|AFK41395.1| unknown [Lotus japonicus] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query305
TAIR|locus:2159426300 SNAP33 "soluble N-ethylmaleimi 0.980 0.996 0.660 1.3e-102
TAIR|locus:2014824263 SNAP30 "soluble N-ethylmaleimi 0.714 0.828 0.6 6e-70
TAIR|locus:2142853251 SNAP29 "synaptosomal-associate 0.777 0.944 0.539 1.3e-61
UNIPROTKB|G1K319208 SNAP25 "Synaptosomal-associate 0.649 0.951 0.253 2.1e-13
UNIPROTKB|E2R907206 SNAP25 "Synaptosomal-associate 0.642 0.951 0.262 2.1e-13
UNIPROTKB|P36977204 snap25a "Synaptosomal-associat 0.642 0.960 0.255 2.7e-13
ZFIN|ZDB-GENE-980526-468204 snap25a "synaptosome-associate 0.642 0.960 0.255 2.7e-13
UNIPROTKB|P60878206 SNAP25 "Synaptosomal-associate 0.213 0.315 0.353 5.5e-13
UNIPROTKB|Q17QQ3206 SNAP25 "Synaptosomal-associate 0.213 0.315 0.353 5.5e-13
UNIPROTKB|E2RPM2206 SNAP25 "Synaptosomal-associate 0.213 0.315 0.353 5.5e-13
TAIR|locus:2159426 SNAP33 "soluble N-ethylmaleimide-sensitive factor adaptor protein 33" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1017 (363.1 bits), Expect = 1.3e-102, P = 1.3e-102
 Identities = 202/306 (66%), Positives = 238/306 (77%)

Query:     1 MFGLKKSPLRVGRHNSVDPGHQVSSRSNPFDSDDELDNKQTLKPSKRTSSEPNLTTSKVS 60
             MFGL+KSP  + +HNSVD     SS+ NPFDSDDE DNK TL PSKRT+SEP+L      
Sbjct:     1 MFGLRKSPANLPKHNSVD---LKSSKPNPFDSDDESDNKHTLNPSKRTTSEPSLADM--- 54

Query:    61 TNPFDDDDIKENTAVSS-YSLTSAARNKYRNDFRDSGGLENQSVQELEDYAVYKAEDTTK 119
             TNPF  + +++  + SS  SL S ++ +Y+N+FRDSGG+ENQSVQELE YAVYKAE+TTK
Sbjct:    55 TNPFGGERVQKGDSSSSKQSLFSNSKYQYKNNFRDSGGIENQSVQELEGYAVYKAEETTK 114

Query:   120 QVHGCLKIAEEIREDATKTLVSLHQQGEQITRTHYTAASIDHDLSRGEKLLGSLGGMFSR 179
              V GCLK+AE+IR DAT+TLV LH QGEQITRTH+ A  IDHDLSRGEKLLGSLGGMFS+
Sbjct:   115 SVQGCLKVAEDIRSDATRTLVMLHDQGEQITRTHHKAVEIDHDLSRGEKLLGSLGGMFSK 174

Query:   180 TWKPKKTRPIMGPVITRDDPVQRRGNHLEQREKLGLNNTSKGQSNTRAQLPEPTDAYQKI 239
             TWKPKKTRPI GPV+TRDD   RR NHLE+REKLGLN+  +GQS TR  LPE  DAYQ++
Sbjct:   175 TWKPKKTRPINGPVVTRDDSPTRRVNHLEKREKLGLNSAPRGQSRTREPLPESADAYQRV 234

Query:   240 EVEKSKQDDALSELSGILGELKNMATDMGSEIDRQNKSXXXXXXXXXXXNIRVKDANLRG 299
             E+EK+KQDD LS+LS ILGELKNMA DMGSEI++QNK            N RV+ +N RG
Sbjct:   235 EMEKAKQDDGLSDLSDILGELKNMAVDMGSEIEKQNKGLDHLHDDVDELNFRVQQSNQRG 294

Query:   300 RRLLGK 305
             RRLLGK
Sbjct:   295 RRLLGK 300
GO:0005634 "nucleus" evidence=ISM
GO:0005484 "SNAP receptor activity" evidence=ISS;IPI
GO:0005886 "plasma membrane" evidence=IDA;TAS
GO:0006944 "cellular membrane fusion" evidence=RCA;TAS
GO:0016192 "vesicle-mediated transport" evidence=RCA;TAS
GO:0000911 "cytokinesis by cell plate formation" evidence=IMP
GO:0005515 "protein binding" evidence=IPI
GO:0009504 "cell plate" evidence=IDA
GO:0016021 "integral to membrane" evidence=IDA
GO:0009612 "response to mechanical stimulus" evidence=IEP
GO:0051707 "response to other organism" evidence=IEP
GO:0009507 "chloroplast" evidence=IDA
GO:0009737 "response to abscisic acid stimulus" evidence=IDA
GO:0000165 "MAPK cascade" evidence=RCA
GO:0000910 "cytokinesis" evidence=RCA
GO:0002679 "respiratory burst involved in defense response" evidence=RCA
GO:0006499 "N-terminal protein myristoylation" evidence=RCA
GO:0006612 "protein targeting to membrane" evidence=RCA
GO:0006820 "anion transport" evidence=RCA
GO:0006862 "nucleotide transport" evidence=RCA
GO:0006888 "ER to Golgi vesicle-mediated transport" evidence=RCA
GO:0009595 "detection of biotic stimulus" evidence=RCA
GO:0009611 "response to wounding" evidence=RCA
GO:0009620 "response to fungus" evidence=RCA
GO:0009625 "response to insect" evidence=RCA
GO:0009627 "systemic acquired resistance" evidence=RCA
GO:0009695 "jasmonic acid biosynthetic process" evidence=RCA
GO:0009697 "salicylic acid biosynthetic process" evidence=RCA
GO:0009753 "response to jasmonic acid stimulus" evidence=RCA
GO:0009862 "systemic acquired resistance, salicylic acid mediated signaling pathway" evidence=RCA
GO:0009863 "salicylic acid mediated signaling pathway" evidence=RCA
GO:0009867 "jasmonic acid mediated signaling pathway" evidence=RCA
GO:0010200 "response to chitin" evidence=RCA
GO:0010310 "regulation of hydrogen peroxide metabolic process" evidence=RCA
GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA
GO:0015696 "ammonium transport" evidence=RCA
GO:0015802 "basic amino acid transport" evidence=RCA
GO:0030968 "endoplasmic reticulum unfolded protein response" evidence=RCA
GO:0031348 "negative regulation of defense response" evidence=RCA
GO:0042742 "defense response to bacterium" evidence=RCA
GO:0043069 "negative regulation of programmed cell death" evidence=RCA
GO:0043090 "amino acid import" evidence=RCA
GO:0043269 "regulation of ion transport" evidence=RCA
GO:0043900 "regulation of multi-organism process" evidence=RCA
GO:0045087 "innate immune response" evidence=RCA
GO:0050832 "defense response to fungus" evidence=RCA
TAIR|locus:2014824 SNAP30 "soluble N-ethylmaleimide-sensitive factor adaptor protein 30" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2142853 SNAP29 "synaptosomal-associated protein SNAP25-like 29" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
UNIPROTKB|G1K319 SNAP25 "Synaptosomal-associated protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|E2R907 SNAP25 "Synaptosomal-associated protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|P36977 snap25a "Synaptosomal-associated protein 25-A" [Carassius auratus (taxid:7957)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-980526-468 snap25a "synaptosome-associated protein 25a" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
UNIPROTKB|P60878 SNAP25 "Synaptosomal-associated protein 25" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|Q17QQ3 SNAP25 "Synaptosomal-associated protein 25" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|E2RPM2 SNAP25 "Synaptosomal-associated protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q9S7P9SNP33_ARATHNo assigned EC number0.68620.98030.9966yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
estExt_fgenesh4_pg.C_LG_XV0236
hypothetical protein (305 aa)
(Populus trichocarpa)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query305
pfam0573962 pfam05739, SNARE, SNARE domain 2e-10
cd0019360 cd00193, t_SNARE, Soluble NSF (N-ethylmaleimide-se 1e-07
smart0039766 smart00397, t_SNARE, Helical region found in SNARE 7e-07
>gnl|CDD|203323 pfam05739, SNARE, SNARE domain Back     alignment and domain information 
 Score = 55.2 bits (134), Expect = 2e-10
 Identities = 25/58 (43%), Positives = 37/58 (63%)

Query: 246 QDDALSELSGILGELKNMATDMGSEIDRQNKSLDYLDDDVDVLNIRVKDANLRGRRLL 303
           +D+AL EL   +GELK +  DMG E++ Q + LD +DD+VD    RV+ AN R ++  
Sbjct: 1   RDEALEELESSIGELKQLFLDMGEEVEEQGELLDRIDDNVDNTQSRVERANKRLKKAA 58

Most if not all vesicular membrane fusion events in eukaryotic cells are believed to be mediated by a conserved fusion machinery, the SNARE [soluble N-ethylmaleimide-sensitive factor (NSF) attachment protein (SNAP) receptors] machinery. The SNARE domain is thought to act as a protein-protein interaction module in the assembly of a SNARE protein complex. Length = 62
>gnl|CDD|238115 cd00193, t_SNARE, Soluble NSF (N-ethylmaleimide-sensitive fusion protein)-Attachment protein (SNAP) REceptor domain; these alpha-helical motifs form twisted and parallel heterotetrameric helix bundles; the core complex contains one helix from a protein that is anchored in the vesicle membrane (synaptobrevin), one helix from a protein of the target membrane (syntaxin), and two helices from another protein anchored in the target membrane (SNAP-25); their interaction forms a core which is composed of a polar zero layer, a flanking leucine-zipper layer acts as a water tight shield to isolate ionic interactions in the zero layer from the surrounding solvent Back     alignment and domain information
>gnl|CDD|197699 smart00397, t_SNARE, Helical region found in SNAREs Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 305
KOG3065273 consensus SNAP-25 (synaptosome-associated protein) 100.0
PF0573963 SNARE: SNARE domain; InterPro: IPR000727 The proce 99.15
cd0019360 t_SNARE Soluble NSF (N-ethylmaleimide-sensitive fu 98.9
KOG3202235 consensus SNARE protein TLG1/Syntaxin 6 [Intracell 98.78
smart0039766 t_SNARE Helical region found in SNAREs. All alpha- 98.75
PF1235266 V-SNARE_C: Snare region anchored in the vesicle me 98.7
KOG3385118 consensus V-SNARE [Intracellular trafficking, secr 97.91
KOG1666220 consensus V-SNARE [Intracellular trafficking, secr 97.79
smart0039766 t_SNARE Helical region found in SNAREs. All alpha- 97.46
cd0019360 t_SNARE Soluble NSF (N-ethylmaleimide-sensitive fu 96.82
PF0390892 Sec20: Sec20; InterPro: IPR005606 Sec20 is a membr 96.55
PF0573963 SNARE: SNARE domain; InterPro: IPR000727 The proce 95.91
PF09753251 Use1: Membrane fusion protein Use1; InterPro: IPR0 94.61
PF1235266 V-SNARE_C: Snare region anchored in the vesicle me 94.33
KOG3065273 consensus SNAP-25 (synaptosome-associated protein) 93.12
KOG0810297 consensus SNARE protein Syntaxin 1 and related pro 91.84
COG5325283 t-SNARE complex subunit, syntaxin [Intracellular t 90.57
KOG0811269 consensus SNARE protein PEP12/VAM3/Syntaxin 7/Synt 83.15
PRK11637 428 AmiB activator; Provisional 82.94
>KOG3065 consensus SNAP-25 (synaptosome-associated protein) component of SNARE complex [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information 
Probab=100.00  E-value=4.9e-46  Score=347.35  Aligned_cols=256  Identities=36%  Similarity=0.476  Sum_probs=197.3

Q ss_pred             CCCCCCCCCCccccccccccCCCCCCCCCCCccCCCCCCCCCCCCccccccccccchhchHHHhhhhhhccCCCCccchh
Q 021914           23 VSSRSNPFDSDDELDNKQTLKPSKRTSSEPNLTTSKVSTNPFDDDDIKENTAVSSYSLTSAARNKYRNDFRDSGGLENQS  102 (305)
Q Consensus        23 ~~~~~npf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~r~~y~~~~~~~~~~e~q~  102 (305)
                      .|+..|||+..+++++.+++.+        .   -....+||+++....+.       .+.  +.+.....++++.++|+
T Consensus         3 ~~~~~~~~~~~e~~~~~~~~~~--------~---~~~~~~d~~~~~~~~~~-------~~~--~~d~~~~~~~~~~~~~~   62 (273)
T KOG3065|consen    3 RPSKNNAFDTEEHSWRELALSQ--------G---LMRGSNDRDDDYARVFA-------HSG--QLDKMELVDSGEEEDEE   62 (273)
T ss_pred             CcccccccccchhhhHhhccch--------h---hhccCCCcccccccccc-------chh--hHHHhccccccccchHH
Confidence            5788999998888877766654        0   12356777776432222       112  45577889999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhHHhhhhhHHHHHHHhhhhcccccCCCC
Q 021914          103 VQELEDYAVYKAEDTTKQVHGCLKIAEEIREDATKTLVSLHQQGEQITRTHYTAASIDHDLSRGEKLLGSLGGMFSRTWK  182 (305)
Q Consensus       103 v~eleq~~~~~~qeT~~ST~rsLrlaeEaee~G~~Tl~~L~~QgEQL~rtE~~LD~I~~dLk~aek~L~~Lks~F~~~~k  182 (305)
                      |++|++++.+++++|++||+|||++|+|++++|++|+++|++|+|||+|||.+||.|+.++++++++|++|++||+..|+
T Consensus        63 ~~~l~~e~~~~~~eSl~St~~~L~~~~e~~~~g~~Tl~~L~~Q~eQL~rte~~lD~i~~d~~~~er~l~~l~~~~g~~~~  142 (273)
T KOG3065|consen   63 VDELEQEIESTAQESLKSTRRMLKLAEESREDGSRTLVMLSEQGEQLERTEKNLDDIKVDLKRAERNLTELKGLFGLLVK  142 (273)
T ss_pred             HHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhHHhhhhhhHHHHHHHHHHHHHHHHHhcccCC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999899


Q ss_pred             CCCCCCCCCCcccCCC---cchhhccchhHHhhhc--CCCCCCCCCCC-----CCCC-----CCCCcHHHHhHHHhHHHH
Q 021914          183 PKKTRPIMGPVITRDD---PVQRRGNHLEQREKLG--LNNTSKGQSNT-----RAQL-----PEPTDAYQKIEVEKSKQD  247 (305)
Q Consensus       183 pkk~~~~~g~v~s~~~---~~~r~~~~~~~R~~lg--~s~~p~g~~~~-----r~~~-----~~~~nd~ee~e~e~~eqD  247 (305)
                      |+++..+.+|......   ..++...+..-+.+.+  .+...++.+..     +.+.     .+.+++.++     ++||
T Consensus       143 p~~~~~~~~p~e~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~e-----deiD  217 (273)
T KOG3065|consen  143 PFKKKRVREPTETSLKQRSISKRRMDETLIRAKPGELRSAAERSPSEKRTGLQGARSSLKARAYQTEPAAE-----DEID  217 (273)
T ss_pred             ccccCCCCCcchhcccccCcchhhhhHHHHhhhcccccccccccccccCcCCcccchhhhhhhhccCChhh-----hHHH
Confidence            9888776555443321   1111111222233332  11111111111     1111     334444333     6899


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHhhhHHHHHHHHHHHHhh
Q 021914          248 DALSELSGILGELKNMATDMGSEIDRQNKSLDYLDDDVDVLNIRVKDANLRGRRLL  303 (305)
Q Consensus       248 ~nLdeLs~~l~rLK~mA~~mg~ELd~QN~~LD~I~~kvD~~~~ri~~~nkr~~kLl  303 (305)
                      .||++|+.+|++||+||++||+||+.||++||+|+++||+++.+|+.+|+||++||
T Consensus       218 ~NL~qis~~lg~LK~mA~dmg~Eie~Qn~~Ld~I~~k~d~~d~~v~~~n~R~~kLl  273 (273)
T KOG3065|consen  218 ENLDQLSAILGRLKNMALDMGSEIESQNERLDRIEDKVDRLDLRVDKANKRAKKLL  273 (273)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhHHHHHHHhhhhHHHHHHHHHHhcC
Confidence            99999999999999999999999999999999999999999999999999999986

>PF05739 SNARE: SNARE domain; InterPro: IPR000727 The process of vesicular fusion with target membranes depends on a set of SNAREs (SNAP-Receptors), which are associated with the fusing membranes [, ] Back     alignment and domain information
>cd00193 t_SNARE Soluble NSF (N-ethylmaleimide-sensitive fusion protein)-Attachment protein (SNAP) REceptor domain; these alpha-helical motifs form twisted and parallel heterotetrameric helix bundles; the core complex contains one helix from a protein that is anchored in the vesicle membrane (synaptobrevin), one helix from a protein of the target membrane (syntaxin), and two helices from another protein anchored in the target membrane (SNAP-25); their interaction forms a core which is composed of a polar zero layer, a flanking leucine-zipper layer acts as a water tight shield to isolate ionic interactions in the zero layer from the surrounding solvent Back     alignment and domain information
>KOG3202 consensus SNARE protein TLG1/Syntaxin 6 [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>smart00397 t_SNARE Helical region found in SNAREs Back     alignment and domain information
>PF12352 V-SNARE_C: Snare region anchored in the vesicle membrane C-terminus; PDB: 1GL2_C 2NPS_C Back     alignment and domain information
>KOG3385 consensus V-SNARE [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG1666 consensus V-SNARE [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>smart00397 t_SNARE Helical region found in SNAREs Back     alignment and domain information
>cd00193 t_SNARE Soluble NSF (N-ethylmaleimide-sensitive fusion protein)-Attachment protein (SNAP) REceptor domain; these alpha-helical motifs form twisted and parallel heterotetrameric helix bundles; the core complex contains one helix from a protein that is anchored in the vesicle membrane (synaptobrevin), one helix from a protein of the target membrane (syntaxin), and two helices from another protein anchored in the target membrane (SNAP-25); their interaction forms a core which is composed of a polar zero layer, a flanking leucine-zipper layer acts as a water tight shield to isolate ionic interactions in the zero layer from the surrounding solvent Back     alignment and domain information
>PF03908 Sec20: Sec20; InterPro: IPR005606 Sec20 is a membrane glycoprotein associated with secretory pathway Back     alignment and domain information
>PF05739 SNARE: SNARE domain; InterPro: IPR000727 The process of vesicular fusion with target membranes depends on a set of SNAREs (SNAP-Receptors), which are associated with the fusing membranes [, ] Back     alignment and domain information
>PF09753 Use1: Membrane fusion protein Use1; InterPro: IPR019150 This entry represents a family of proteins, approximately 300 residues in length, involved in vesicle transport Back     alignment and domain information
>PF12352 V-SNARE_C: Snare region anchored in the vesicle membrane C-terminus; PDB: 1GL2_C 2NPS_C Back     alignment and domain information
>KOG3065 consensus SNAP-25 (synaptosome-associated protein) component of SNARE complex [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG0810 consensus SNARE protein Syntaxin 1 and related proteins [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>COG5325 t-SNARE complex subunit, syntaxin [Intracellular trafficking and secretion] Back     alignment and domain information
>KOG0811 consensus SNARE protein PEP12/VAM3/Syntaxin 7/Syntaxin 17 [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PRK11637 AmiB activator; Provisional Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query305
3zur_A 960 Crystal Structure Of An Engineered Botulinum Neurot 2e-06
1urq_D69 Crystal Structure Of Neuronal Q-Snares In Complex W 5e-06
3hd7_D68 Helical Extension Of The Neuronal Snare Complex Int 5e-06
1n7s_D66 High Resolution Structure Of A Truncated Neuronal S 6e-06
1sfc_D87 Neuronal Synaptic Fusion Complex Length = 87 6e-06
1xtg_B59 Crystal Structure Of Neurotoxin BontA COMPLEXED WIT 8e-06
1kil_D66 Three-Dimensional Structure Of The ComplexinSNARE C 3e-05
3rk2_D65 Truncated Snare Complex Length = 65 3e-05
3zus_A 927 Crystal Structure Of An Engineered Botulinum Neurot 8e-04
1l4a_D87 X-Ray Structure Of The Neuronal ComplexinSNARE COMP 9e-04
>pdb|3ZUR|A Chain A, Crystal Structure Of An Engineered Botulinum Neurotoxin Type A-Snare23 Derivative, Lc0-A-Snap25-Hn-A Length = 960 Back     alignment and structure 
Iteration: 1

 Score = 49.3 bits (116), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 23/60 (38%), Positives = 36/60 (60%)
Query: 245 KQDDALSELSGILGELKNMATDMGSEIDRQNKSXXXXXXXXXXXNIRVKDANLRGRRLLG 304
           + D+ L ++SGI+G L++MA DMG+EID QN+              R+ +AN R  ++LG
Sbjct: 451 EMDENLEQVSGIIGNLRHMALDMGNEIDTQNRQIDRIMEKADSNKTRIDEANQRATKMLG 510
>pdb|1URQ|D Chain D, Crystal Structure Of Neuronal Q-Snares In Complex With R-Snare Motif Of Tomosyn Length = 69 Back     alignment and structure
>pdb|3HD7|D Chain D, Helical Extension Of The Neuronal Snare Complex Into The Membrane, Spacegroup C 1 2 1 Length = 68 Back     alignment and structure
>pdb|1N7S|D Chain D, High Resolution Structure Of A Truncated Neuronal Snare Complex Length = 66 Back     alignment and structure
>pdb|1SFC|D Chain D, Neuronal Synaptic Fusion Complex Length = 87 Back     alignment and structure
>pdb|1XTG|B Chain B, Crystal Structure Of Neurotoxin BontA COMPLEXED WITH Synaptosomal-Associated Protein 25 Length = 59 Back     alignment and structure
>pdb|1KIL|D Chain D, Three-Dimensional Structure Of The ComplexinSNARE COMPLEX Length = 66 Back     alignment and structure
>pdb|3RK2|D Chain D, Truncated Snare Complex Length = 65 Back     alignment and structure
>pdb|3ZUS|A Chain A, Crystal Structure Of An Engineered Botulinum Neurotoxin Type A-Snare23 Derivative, Lc-A-Snap23-Hn-A Length = 927 Back     alignment and structure
>pdb|1L4A|D Chain D, X-Ray Structure Of The Neuronal ComplexinSNARE COMPLEX From The Squid Loligo Pealei Length = 87 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query305
1n7s_D66 SNAP-25A; neuronal snare protein complex, four hel 5e-20
1sfc_D87 Protein (SNAP-25B), protein (synaptobrevin 2); mem 7e-19
1l4a_D87 S-SNAP25 fusion protein; snare, snare complex, mem 8e-17
2nps_D82 Syntaxin-6; vesicle fusion, snare complex, early e 3e-10
1gl2_D65 Syntaxin 8, vesicle transport V-snare protein VTI1 7e-10
3b5n_D64 Protein transport protein SEC9; snare complex, syn 2e-09
1n7s_C79 SNAP-25A; neuronal snare protein complex, four hel 4e-07
1l4a_C83 S-SNAP25 fusion protein; snare, snare complex, mem 2e-06
2nps_C81 Vesicle transport through interaction with T- snar 2e-04
>1n7s_D SNAP-25A; neuronal snare protein complex, four helix bundle, transport protein; 1.45A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 3rk2_D 3rk3_D 3rl0_D 1kil_D 3hd7_D* 3hd9_D 3ipd_D 1urq_D 1xtg_B Length = 66 Back     alignment and structure
 Score = 80.9 bits (200), Expect = 5e-20
 Identities = 25/65 (38%), Positives = 43/65 (66%)

Query: 240 EVEKSKQDDALSELSGILGELKNMATDMGSEIDRQNKSLDYLDDDVDVLNIRVKDANLRG 299
              +++ D+ L ++SGI+G L++MA DMG+EID QN+ +D + +  D    R+ +AN R 
Sbjct: 2   SARENEMDENLEQVSGIIGNLRHMALDMGNEIDTQNRQIDRIMEKADSNKTRIDEANQRA 61

Query: 300 RRLLG 304
            ++LG
Sbjct: 62  TKMLG 66
>1sfc_D Protein (SNAP-25B), protein (synaptobrevin 2); membrane fusion protein complex, transport protein; 2.40A {Rattus norvegicus} SCOP: h.1.15.1 Length = 87 Back     alignment and structure
>1l4a_D S-SNAP25 fusion protein; snare, snare complex, membrane fusion, neurotransmission, endocytosis/exocytosis complex; 2.95A {Loligo pealei} SCOP: h.1.15.1 Length = 87 Back     alignment and structure
>2nps_D Syntaxin-6; vesicle fusion, snare complex, early endosomal snare complex, VTI1A, VAMP4, transport protein; 2.50A {Homo sapiens} Length = 82 Back     alignment and structure
>1gl2_D Syntaxin 8, vesicle transport V-snare protein VTI1-like 1; membrane protein, membrane fusion protein complex, coiled coil, transmembrane; 1.9A {Rattus norvegicus} SCOP: h.1.15.1 Length = 65 Back     alignment and structure
>3b5n_D Protein transport protein SEC9; snare complex, syntaxin, synaptobrevin, SNAP-25, SSO1P, SNC1P, SEC9P, SSO1, SNC1, coiled coil; 1.60A {Saccharomyces cerevisiae} Length = 64 Back     alignment and structure
>1n7s_C SNAP-25A; neuronal snare protein complex, four helix bundle, transport protein; 1.45A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 1sfc_C 1urq_C 3hd7_C* 3hd9_C 3ipd_C 3rk2_C 3rk3_C 3rl0_C 1kil_C 1jth_A Length = 79 Back     alignment and structure
>1l4a_C S-SNAP25 fusion protein; snare, snare complex, membrane fusion, neurotransmission, endocytosis/exocytosis complex; 2.95A {Loligo pealei} SCOP: h.1.15.1 Length = 83 Back     alignment and structure
>2nps_C Vesicle transport through interaction with T- snares homolog 1A; vesicle fusion, snare complex, early endosomal snare complex, VTI1A, VAMP4, transport protein; 2.50A {Rattus norvegicus} Length = 81 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query305
1l4a_C83 S-SNAP25 fusion protein; snare, snare complex, mem 99.9
3b5n_C70 Protein transport protein SEC9; snare complex, syn 99.87
1n7s_C79 SNAP-25A; neuronal snare protein complex, four hel 99.83
1l4a_D87 S-SNAP25 fusion protein; snare, snare complex, mem 99.73
3b5n_D64 Protein transport protein SEC9; snare complex, syn 99.71
1sfc_D87 Protein (SNAP-25B), protein (synaptobrevin 2); mem 99.71
1nhl_A54 Synaptosomal-associated protein 23; snare, coiled- 99.68
1n7s_D66 SNAP-25A; neuronal snare protein complex, four hel 99.65
1gl2_D65 Syntaxin 8, vesicle transport V-snare protein VTI1 99.55
2nps_D82 Syntaxin-6; vesicle fusion, snare complex, early e 99.5
1gl2_C65 VTI1B, vesicle transport V-snare protein VTI1-like 99.38
2nps_C81 Vesicle transport through interaction with T- snar 99.03
3hd7_B109 Syntaxin-1A; membrane protein, coiled-coil, 4-heli 96.97
2nps_B71 Syntaxin 13, vesicle-associated membrane protein 4 96.01
1jth_B77 Syntaxin 1A; coiled-coil, polar layer, endocytosis 95.86
1gl2_B65 Syntaxin 7; membrane protein, membrane fusion prot 95.81
3b5n_B69 Protein SSO1; snare complex, syntaxin, synaptobrev 95.73
1n7s_B68 Syntaxin 1A; neuronal snare protein complex, four 95.46
1sfc_B83 Protein (syntaxin 1A), protein (synaptobrevin 2); 95.19
2nps_B71 Syntaxin 13, vesicle-associated membrane protein 4 94.31
3b5n_D64 Protein transport protein SEC9; snare complex, syn 94.06
1gl2_B65 Syntaxin 7; membrane protein, membrane fusion prot 94.04
3hd7_B109 Syntaxin-1A; membrane protein, coiled-coil, 4-heli 92.78
3b5n_B69 Protein SSO1; snare complex, syntaxin, synaptobrev 92.55
1n7s_B68 Syntaxin 1A; neuronal snare protein complex, four 92.06
1nhl_A54 Synaptosomal-associated protein 23; snare, coiled- 91.82
1l4a_D87 S-SNAP25 fusion protein; snare, snare complex, mem 91.8
1jth_B77 Syntaxin 1A; coiled-coil, polar layer, endocytosis 91.53
1sfc_B83 Protein (syntaxin 1A), protein (synaptobrevin 2); 90.42
1n7s_C79 SNAP-25A; neuronal snare protein complex, four hel 89.85
1n7s_D66 SNAP-25A; neuronal snare protein complex, four hel 89.79
1sfc_D87 Protein (SNAP-25B), protein (synaptobrevin 2); mem 89.16
3p8c_F159 ABL interactor 2; actin polymerization, protein bi 87.3
1gl2_C65 VTI1B, vesicle transport V-snare protein VTI1-like 86.59
3b5n_C70 Protein transport protein SEC9; snare complex, syn 85.83
1l4a_C83 S-SNAP25 fusion protein; snare, snare complex, mem 82.73
2nps_D82 Syntaxin-6; vesicle fusion, snare complex, early e 82.29
1gl2_D65 Syntaxin 8, vesicle transport V-snare protein VTI1 81.79
2nps_C81 Vesicle transport through interaction with T- snar 81.31
>1l4a_C S-SNAP25 fusion protein; snare, snare complex, membrane fusion, neurotransmission, endocytosis/exocytosis complex; 2.95A {Loligo pealei} SCOP: h.1.15.1 Back     alignment and structure
Probab=99.90  E-value=1.1e-23  Score=164.10  Aligned_cols=77  Identities=26%  Similarity=0.400  Sum_probs=72.2

Q ss_pred             cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhHHhhhhhHHHHHHHhhhhcc
Q 021914           99 ENQSVQELEDYAVYKAEDTTKQVHGCLKIAEEIREDATKTLVSLHQQGEQITRTHYTAASIDHDLSRGEKLLGSLGG  175 (305)
Q Consensus        99 e~q~v~eleq~~~~~~qeT~~ST~rsLrlaeEaee~G~~Tl~~L~~QgEQL~rtE~~LD~I~~dLk~aek~L~~Lks  175 (305)
                      ..++|++|++++++++++|++||+|||++|++++++|++|+++|++|||||+|||++||.|++||++|+++|++|++
T Consensus         7 ~~~~~q~l~~~~~~~~~esl~STrr~l~l~~es~~~g~~Tl~~L~~QgEQL~rie~~ld~I~~dl~~Aek~L~~L~~   83 (83)
T 1l4a_C            7 PKTELEEIQQQCNQVTDDSLESTRRMLNMCEESKEAGIRTLVMLDEQGEQLDRIEEGLDQINQDMKDAEKNLEGMEK   83 (83)
T ss_dssp             -CTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSGGGCTTC---
T ss_pred             cHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccC
Confidence            45899999999999999999999999999999999999999999999999999999999999999999999999973
>3b5n_C Protein transport protein SEC9; snare complex, syntaxin, synaptobrevin, SNAP-25, SSO1P, SNC1P, SEC9P, SSO1, SNC1, coiled coil; 1.60A {Saccharomyces cerevisiae} SCOP: h.1.15.1 Back     alignment and structure
>1n7s_C SNAP-25A; neuronal snare protein complex, four helix bundle, transport protein; 1.45A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 1sfc_C 1urq_C 3hd7_C* 3hd9_C 3ipd_C 3rk2_C 3rk3_C 3rl0_C 1kil_C 1jth_A Back     alignment and structure
>1l4a_D S-SNAP25 fusion protein; snare, snare complex, membrane fusion, neurotransmission, endocytosis/exocytosis complex; 2.95A {Loligo pealei} SCOP: h.1.15.1 Back     alignment and structure
>3b5n_D Protein transport protein SEC9; snare complex, syntaxin, synaptobrevin, SNAP-25, SSO1P, SNC1P, SEC9P, SSO1, SNC1, coiled coil; 1.60A {Saccharomyces cerevisiae} Back     alignment and structure
>1sfc_D Protein (SNAP-25B), protein (synaptobrevin 2); membrane fusion protein complex, transport protein; 2.40A {Rattus norvegicus} SCOP: h.1.15.1 Back     alignment and structure
>1nhl_A Synaptosomal-associated protein 23; snare, coiled-coil, protein transport; 2.30A {Homo sapiens} SCOP: h.1.15.1 Back     alignment and structure
>1n7s_D SNAP-25A; neuronal snare protein complex, four helix bundle, transport protein; 1.45A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 3rk2_D 3rk3_D 3rl0_D 1kil_D 3hd7_D* 3hd9_D 3ipd_D 1urq_D 1xtg_B Back     alignment and structure
>1gl2_D Syntaxin 8, vesicle transport V-snare protein VTI1-like 1; membrane protein, membrane fusion protein complex, coiled coil, transmembrane; 1.9A {Rattus norvegicus} SCOP: h.1.15.1 Back     alignment and structure
>2nps_D Syntaxin-6; vesicle fusion, snare complex, early endosomal snare complex, VTI1A, VAMP4, transport protein; 2.50A {Homo sapiens} Back     alignment and structure
>1gl2_C VTI1B, vesicle transport V-snare protein VTI1-like 1; membrane protein, membrane fusion protein complex, coiled coil, transmembrane; 1.9A {Mus musculus} SCOP: h.1.15.1 Back     alignment and structure
>2nps_C Vesicle transport through interaction with T- snares homolog 1A; vesicle fusion, snare complex, early endosomal snare complex, VTI1A, VAMP4, transport protein; 2.50A {Rattus norvegicus} Back     alignment and structure
>3hd7_B Syntaxin-1A; membrane protein, coiled-coil, 4-helical bundle, cell juncti cytoplasmic vesicle, membrane, phosphoprotein; HET: GGG; 3.40A {Rattus norvegicus} PDB: 3hd9_B 3ipd_B Back     alignment and structure
>2nps_B Syntaxin 13, vesicle-associated membrane protein 4; vesicle fusion, snare complex, early endosomal snare complex, VTI1A, VAMP4, transport protein; 2.50A {Rattus norvegicus} Back     alignment and structure
>1jth_B Syntaxin 1A; coiled-coil, polar layer, endocytosis-exocytosis complex; 2.00A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 1hvv_A* 1urq_B Back     alignment and structure
>1gl2_B Syntaxin 7; membrane protein, membrane fusion protein complex, coiled coil, transmembrane; 1.9A {Mus musculus} SCOP: h.1.15.1 Back     alignment and structure
>3b5n_B Protein SSO1; snare complex, syntaxin, synaptobrevin, SNAP-25, SSO1P, SNC1P, SEC9P, SSO1, SNC1, coiled coil; 1.60A {Saccharomyces cerevisiae} SCOP: h.1.15.1 Back     alignment and structure
>1n7s_B Syntaxin 1A; neuronal snare protein complex, four helix bundle, transport protein; 1.45A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 3rk2_B 3rk3_B 3rl0_B 1kil_B Back     alignment and structure
>1sfc_B Protein (syntaxin 1A), protein (synaptobrevin 2); membrane fusion protein complex, transport protein; 2.40A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 1l4a_B Back     alignment and structure
>2nps_B Syntaxin 13, vesicle-associated membrane protein 4; vesicle fusion, snare complex, early endosomal snare complex, VTI1A, VAMP4, transport protein; 2.50A {Rattus norvegicus} Back     alignment and structure
>3b5n_D Protein transport protein SEC9; snare complex, syntaxin, synaptobrevin, SNAP-25, SSO1P, SNC1P, SEC9P, SSO1, SNC1, coiled coil; 1.60A {Saccharomyces cerevisiae} Back     alignment and structure
>1gl2_B Syntaxin 7; membrane protein, membrane fusion protein complex, coiled coil, transmembrane; 1.9A {Mus musculus} SCOP: h.1.15.1 Back     alignment and structure
>3hd7_B Syntaxin-1A; membrane protein, coiled-coil, 4-helical bundle, cell juncti cytoplasmic vesicle, membrane, phosphoprotein; HET: GGG; 3.40A {Rattus norvegicus} PDB: 3hd9_B 3ipd_B Back     alignment and structure
>3b5n_B Protein SSO1; snare complex, syntaxin, synaptobrevin, SNAP-25, SSO1P, SNC1P, SEC9P, SSO1, SNC1, coiled coil; 1.60A {Saccharomyces cerevisiae} SCOP: h.1.15.1 Back     alignment and structure
>1n7s_B Syntaxin 1A; neuronal snare protein complex, four helix bundle, transport protein; 1.45A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 3rk2_B 3rk3_B 3rl0_B 1kil_B Back     alignment and structure
>1nhl_A Synaptosomal-associated protein 23; snare, coiled-coil, protein transport; 2.30A {Homo sapiens} SCOP: h.1.15.1 Back     alignment and structure
>1l4a_D S-SNAP25 fusion protein; snare, snare complex, membrane fusion, neurotransmission, endocytosis/exocytosis complex; 2.95A {Loligo pealei} SCOP: h.1.15.1 Back     alignment and structure
>1jth_B Syntaxin 1A; coiled-coil, polar layer, endocytosis-exocytosis complex; 2.00A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 1hvv_A* 1urq_B Back     alignment and structure
>1sfc_B Protein (syntaxin 1A), protein (synaptobrevin 2); membrane fusion protein complex, transport protein; 2.40A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 1l4a_B Back     alignment and structure
>1n7s_C SNAP-25A; neuronal snare protein complex, four helix bundle, transport protein; 1.45A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 1sfc_C 1urq_C 3hd7_C* 3hd9_C 3ipd_C 3rk2_C 3rk3_C 3rl0_C 1kil_C 1jth_A Back     alignment and structure
>1n7s_D SNAP-25A; neuronal snare protein complex, four helix bundle, transport protein; 1.45A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 3rk2_D 3rk3_D 3rl0_D 1kil_D 3hd7_D* 3hd9_D 3ipd_D 1urq_D 1xtg_B Back     alignment and structure
>1sfc_D Protein (SNAP-25B), protein (synaptobrevin 2); membrane fusion protein complex, transport protein; 2.40A {Rattus norvegicus} SCOP: h.1.15.1 Back     alignment and structure
>3p8c_F ABL interactor 2; actin polymerization, protein binding; 2.29A {Homo sapiens} Back     alignment and structure
>1gl2_C VTI1B, vesicle transport V-snare protein VTI1-like 1; membrane protein, membrane fusion protein complex, coiled coil, transmembrane; 1.9A {Mus musculus} SCOP: h.1.15.1 Back     alignment and structure
>3b5n_C Protein transport protein SEC9; snare complex, syntaxin, synaptobrevin, SNAP-25, SSO1P, SNC1P, SEC9P, SSO1, SNC1, coiled coil; 1.60A {Saccharomyces cerevisiae} SCOP: h.1.15.1 Back     alignment and structure
>1l4a_C S-SNAP25 fusion protein; snare, snare complex, membrane fusion, neurotransmission, endocytosis/exocytosis complex; 2.95A {Loligo pealei} SCOP: h.1.15.1 Back     alignment and structure
>2nps_D Syntaxin-6; vesicle fusion, snare complex, early endosomal snare complex, VTI1A, VAMP4, transport protein; 2.50A {Homo sapiens} Back     alignment and structure
>1gl2_D Syntaxin 8, vesicle transport V-snare protein VTI1-like 1; membrane protein, membrane fusion protein complex, coiled coil, transmembrane; 1.9A {Rattus norvegicus} SCOP: h.1.15.1 Back     alignment and structure
>2nps_C Vesicle transport through interaction with T- snares homolog 1A; vesicle fusion, snare complex, early endosomal snare complex, VTI1A, VAMP4, transport protein; 2.50A {Rattus norvegicus} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00