Citrus Sinensis ID: 021943

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-----
Protein Sequence
MALVAILTHGQPLNSAKPTPKLSNLPPIKRTPNSCSFNNFSNTSREFLYEKITNFCTFQFFKQPTFRIRSFNSEGDENYVPEDSPDEQDQLANDEILKNKTVETSGFGSSFLAKLTIAVGVAATITLLSIGLKPPNLGTSFGVQRLAEGSSSSLAMAAPSGFSFKVFGYKFILPEYAPGWIYFWLLMAAGSGLFVSEEALNIWVSISLARLLTLDGTWQSFAESFSRNAPYIVSTVLWVYWGVCISDMIPFYLGKLFTKSGASDDVCSKLGISKEKALSITQSVQKYGNLIGFGELKSLVNFVCA
Secondary Structure (PSIPRED)
cccEEcccccccccccccccccccccccccccccccccccccccccHHHHHcccccccccccccccEEEEccccccccccccccccccccHHHHHHHHcccEEEcccccHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccEEEEEccEEEEEcccccHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHccccHHHHHHHHcccccHHHHHHHHHHHHHHHccccHHHHHHHHHHcccccHHHHHHcccHHHHHHHHHHHHHHccEEEEEEEEEEEEEEcc
Secondary Structure Prediction (SSPRO)
cccHHHHcccccccccccccccccccccccccccEEEcccccccHHHHHHHcccccccHHccccccEEEEEcccccccccccccccccccccHHHHHHcccEccccccHHHHHHHHHHHHHHHHHHHHHHHcccccccccccHHHHHccccccccccccccccHHHcccEEEEcccccHHHHHHHHHHHccccEEcHHHHHHHHHHHHHHHHHccccHHHHHHHHcccccHEEHEEHHHHHHHHHHccHHHHHHHHHHHccccHHHHHHccccHHHHHHHHHHHHHHcccEEEEEEEEEEEEEcc
Coil and Loop (DISEMBL)
MALVAILthgqplnsakptpklsnlppikrtpnscsfnnfsntSREFLYEKITNFctfqffkqptfrirsfnsegdenyvpedspdeqdqLANDeilknktvetsgfgssfLAKLTIAVGVAATITLLSiglkppnlgtsfgvqrlaegsssslamaapsgfsfkvfgykfilpeyapgwIYFWLLMAAGSGLFVSEEALNIWVSISLARLLTLDGTWQSFAEsfsrnapyiVSTVLWVYWGVCIsdmipfylgklftksgasddvcsklGISKEKALSITQSVQKYGNLIGFGELKSLVNFVCA
Flexible Loop (DISEMBL)
MALVAILthgqplnsakptpklsnlppikrtpnscsFNNFSNTSREFLYEKITNFCTFQFFKQPTFRIRSFNSEGDENYVPEDSPDEQDQLANDEILKNKTVETSGFGSSFLAKLTIAVGVAATITLLSIGLKPPNLGTSFGVQRLAEGSSSSLAMAAPSGFSFKVFGYKFILPEYAPGWIYFWLLMAAGSGLFVSEEALNIWVSISLARLLTLDGTWQSFAEsfsrnapyIVSTVLWVYWGVCISDMIPFYLGKLFTKSGASDDVCSKLGISKEKALSITQSVQKYGNLIGFGELKSLVNFVCA
Low Complexity Region (SEG)
MALVAILTHGQPLNSAKPTPKLSNLPPIKRTPnscsfnnfsntsREFLYEKITNFCTFQFFKQPTFRIRSFNSEGDENYVPEDSPDEQDQLANDEILKNKTVETSGFGSSFLAKLTIAVGVAATITLLSIGLKPPNLGTSFGVQRLAEGSSSSLAMAAPSGFSFKVFGYKFILPEYAPGWIYFWLLMAAGSGLFVSEEALNIWVSISLARLLTLDGTWQSFAESFSRNAPYIVSTVLWVYWGVCISDMIPFYLGKLFTKSGASDDVCSKLGISKEKALSITQSVQKYGNLIGFGELKSLVNFVCA
Disordered region (IsUnstruct)
************************************FNNFSNTSREFLYEKITNFCTFQFFKQPTFRIRS*******************************VETSGFGSSFLAKLTIAVGVAATITLLSIGLKPPNLGTSFGVQR***********AAPSGFSFKVFGYKFILPEYAPGWIYFWLLMAAGSGLFVSEEALNIWVSISLARLLTLDGTWQSFAESFSRNAPYIVSTVLWVYWGVCISDMIPFYLGKLFTKSGASDDVCSKLGISKEKALSITQSVQKYGNLIGFGELKSLVNFVC*
Disordered Region (DISOPRED)
****A***HGQPLN**************KRTPNSCSFNNFSNTSREFLYEKITNFCTFQFFKQ*******************************************FGSSFLAKLTIAVGVAATITLLS****************************APSGFSFKVFGYKFILPEYAPGWIYFWLLMAAGSGLFVSEEALNIWVSISLARLLTLDGTWQSFAESFSRNAPYIVSTVLWVYWGVCISDMIPFYLGKLFTK***********GISKEKALSITQSVQKYGNLIGFGELKSLVNFVCA
Disordered Region (DISEMBL)
MALVAILTHGQPLNSAKPTPKLSNLPPIKRTPNSCSFNNFSNTSREFLYEKITNFCTFQFFKQPTFRIRSFNSEGDENYVPEDSPDEQDQLANDEILKNKTVETSGFGSSFLAKLTIAVGVAATITLLSIGLKPPNLGTSFGVQRLAEGSSSSLAMAAPSGFSFKVFGYKFILPEYAPGWIYFWLLMAAGSGLFVSEEALNIWVSISLARLLTLDGTWQSFAESFSRNAPYIVSTVLWVYWGVCISDMIPFYLGKLFTKSGASDDVCSKLGISKEKALSITQSVQKYGNLIGFGELKSLVNFVCA
Disordered Region (DISPRO)
************LNSAKPTPKLSNLPPIKRTPNSCSFNNFSNTSREFLYEKITNFCTFQFFKQPTFRIRSFNS***************DQLANDEILKNKTVETSGFGSSFLAKLTIAVGVAATITLLSIGLKPP****SF********SSSSLAMAAPSGFSFKVFGYKFILPEYAPGWIYFWLLMAAGSGLFVSEEALNIWVSISLARLLTLDGTWQSFAESFSRNAPYIVSTVLWVYWGVCISDMIPFYLGKLFTKSGASDDVCSKLGISKEKALSITQSVQKYGNLIGFGELKSLVNFVCA
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MALVAILTHGQPLNSAKPTPKLSNLPPIKRTPNSCSFNNFSNTSREFLYEKITNFCTFQFFKQPTFRIRSFNSEGDENYVPEDSPDEQDQLANDEILKNKTVETSGFGSSFLAKLTIAVGVAATITLLSIGLKPPNLGTSFGVQRLAEGSSSSLAMAAPSGFSFKVFGYKFILPEYAPGWIYFWLLMAAGSGLFVSEEALNIWVSISLARLLTLDGTWQSFAESFSRNAPYIVSTVLWVYWGVCISDMIPFYLGKLFTKSGASDDVCSKLGISKEKALSITQSVQKYGNLIGFGELKSLVNFVCA
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	305
297744365	350	unnamed protein product [Vitis vinifera]	0.954	0.831	0.560	8e-84
359480135	358	PREDICTED: uncharacterized protein LOC10	0.767	0.653	0.650	3e-83
357505247	375	hypothetical protein MTR_7g057180 [Medic	0.757	0.616	0.627	4e-69
240255807	347	uncharacterized protein [Arabidopsis tha	0.718	0.631	0.597	5e-69
357138746	362	PREDICTED: uncharacterized protein LOC10	0.672	0.566	0.614	2e-66
326518903	355	predicted protein [Hordeum vulgare subsp	0.662	0.569	0.611	9e-66
326496210	352	predicted protein [Hordeum vulgare subsp	0.662	0.573	0.611	1e-65
255560143	256	conserved hypothetical protein [Ricinus	0.527	0.628	0.737	9e-62
222622334	900	hypothetical protein OsJ_05675 [Oryza sa	0.560	0.19	0.645	6e-57
224069790	175	predicted protein [Populus trichocarpa]	0.560	0.977	0.426	7e-27

>gi|297744365|emb|CBI37335.3| unnamed protein product [Vitis vinifera]

 Score =  316 bits (810), Expect = 8e-84,   Method: Compositional matrix adjust.
 Identities = 176/314 (56%), Positives = 212/314 (67%), Gaps = 23/314 (7%)

Query: 1   MALVAILTHGQPLNSAKPTPKLSN-LPPIKRTP--NSCSFNNFSNTSREFLYEKITNFCT 57
           MA   +L+H   L    P    S    PI R+P  +   ++  S+       + IT    
Sbjct: 1   MAPTPLLSHAFSLLRPPPPSHFSKPRRPIHRSPLLHVPPYSLVSD-------DTITPLFP 53

Query: 58  FQFFKQ-PTFRIRSFNSEGDENYVP---EDSPDEQDQLA--------NDEILKNKTVETS 105
             F K   T RI SF +E  ENY     +D+P EQD  A        ++EI +N   ETS
Sbjct: 54  PHFLKPFSTSRIGSFQNEDLENYEAAGLKDTPVEQDGDAPVKEQSRISEEIFQNGEYETS 113

Query: 106 GFGSSFLAKLTIAVGVAATITLLSIGLKPPNLGTSFGVQRLAEGSSSSLAMAAPSGFSFK 165
           G G SFL K+ IA+GVA T T++S G K P +G+SFG QRLAE SSSS+  A P GF+FK
Sbjct: 114 GSGYSFLVKVAIALGVAVTATIISAGFKQP-VGSSFGFQRLAEDSSSSVLSATPVGFTFK 172

Query: 166 VFGYKFILPEYAPGWIYFWLLMAAGSGLFVSEEALNIWVSISLARLLTLDGTWQSFAESF 225
            FGY+ +LPEY PGW+YFWLLMAAG GLF+SEEALNIWV ISLAR+L LDG+WQSFAESF
Sbjct: 173 AFGYRIVLPEYTPGWVYFWLLMAAGCGLFISEEALNIWVGISLARMLHLDGSWQSFAESF 232

Query: 226 SRNAPYIVSTVLWVYWGVCISDMIPFYLGKLFTKSGASDDVCSKLGISKEKALSITQSVQ 285
           SR AP I+ST+ WVYWGVCISDM+PFYLGK F ++GASDDVCSKLGISKEKA SIT+ VQ
Sbjct: 233 SRKAPCIISTIFWVYWGVCISDMVPFYLGKAFRQTGASDDVCSKLGISKEKAASITRVVQ 292

Query: 286 KYGNLIGFGELKSL 299
           +YGN IGF E  S+
Sbjct: 293 RYGNFIGFVERVSI 306

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359480135|ref|XP_002268595.2| PREDICTED: uncharacterized protein LOC100261941 [Vitis vinifera]

 Score =  314 bits (805), Expect = 3e-83,   Method: Compositional matrix adjust.
 Identities = 160/246 (65%), Positives = 188/246 (76%), Gaps = 12/246 (4%)

Query: 65  TFRIRSFNSEGDENYVP---EDSPDEQDQLA--------NDEILKNKTVETSGFGSSFLA 113
           T RI SF +E  ENY     +D+P EQD  A        ++EI +N   ETSG G SFL 
Sbjct: 31  TNRIGSFQNEDLENYEAAGLKDTPVEQDGDAPVKEQSRISEEIFQNGEYETSGSGYSFLV 90

Query: 114 KLTIAVGVAATITLLSIGLKPPNLGTSFGVQRLAEGSSSSLAMAAPSGFSFKVFGYKFIL 173
           K+ IA+GVA T T++S G K P +G+SFG QRLAE SSSS+  A P GF+FK FGY+ +L
Sbjct: 91  KVAIALGVAVTATIISAGFKQP-VGSSFGFQRLAEDSSSSVLSATPVGFTFKAFGYRIVL 149

Query: 174 PEYAPGWIYFWLLMAAGSGLFVSEEALNIWVSISLARLLTLDGTWQSFAESFSRNAPYIV 233
           PEY PGW+YFWLLMAAG GLF+SEEALNIWV ISLAR+L LDG+WQSFAESFSR AP I+
Sbjct: 150 PEYTPGWVYFWLLMAAGCGLFISEEALNIWVGISLARMLHLDGSWQSFAESFSRKAPCII 209

Query: 234 STVLWVYWGVCISDMIPFYLGKLFTKSGASDDVCSKLGISKEKALSITQSVQKYGNLIGF 293
           ST+ WVYWGVCISDM+PFYLGK F ++GASDDVCSKLGISKEKA SIT+ VQ+YGN IGF
Sbjct: 210 STIFWVYWGVCISDMVPFYLGKAFRQTGASDDVCSKLGISKEKAASITRVVQRYGNFIGF 269

Query: 294 GELKSL 299
            E  S+
Sbjct: 270 VERVSI 275

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357505247|ref|XP_003622912.1| hypothetical protein MTR_7g057180 [Medicago truncatula] gi|355497927|gb|AES79130.1| hypothetical protein MTR_7g057180 [Medicago truncatula]

 Score =  267 bits (683), Expect = 4e-69,   Method: Compositional matrix adjust.
 Identities = 148/236 (62%), Positives = 175/236 (74%), Gaps = 5/236 (2%)

Query: 67  RIRSFNSEGDENYVP---EDSPDEQDQLANDEILKNKTVETSGFGSSFLAKLTIAVGVAA 123
           RI+    EG+ENY     +D  D QD+ +N E+  N     +     FLA + IA+G+AA
Sbjct: 59  RIKCSKHEGEENYEALKSKDISDTQDRFSN-EVKANGKERHNKTEIPFLAMIAIALGIAA 117

Query: 124 TITLLSIGLKPPNLGTSFGVQRLAEGSSSSLAMAAPSGFSFKVFGYKFILPEYAPGWIYF 183
             T+ SI  + P LG+  G+Q L++GSSSS       GF+FKVFG+  I+P+ APGWIYF
Sbjct: 118 LATIASI-RQQPILGSPSGLQILSDGSSSSAVAPVAVGFTFKVFGFSVIIPQCAPGWIYF 176

Query: 184 WLLMAAGSGLFVSEEALNIWVSISLARLLTLDGTWQSFAESFSRNAPYIVSTVLWVYWGV 243
           WLLMAAG GLF+SEEALNIWV  S+ARLL+LDGTWQSFAESFSRNAPYI+STVLWVYWGV
Sbjct: 177 WLLMAAGCGLFISEEALNIWVGTSIARLLSLDGTWQSFAESFSRNAPYIISTVLWVYWGV 236

Query: 244 CISDMIPFYLGKLFTKSGASDDVCSKLGISKEKALSITQSVQKYGNLIGFGELKSL 299
           CISDMIPFYLGKLF +SGAS DV S+LGI KEKA+ IT  VQKYGNLIGF E  SL
Sbjct: 237 CISDMIPFYLGKLFRQSGASADVTSRLGIGKEKAIEITDVVQKYGNLIGFVERFSL 292

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|240255807|ref|NP_193051.4| uncharacterized protein [Arabidopsis thaliana] gi|332657838|gb|AEE83238.1| uncharacterized protein [Arabidopsis thaliana]

 Score =  267 bits (682), Expect = 5e-69,   Method: Compositional matrix adjust.
 Identities = 144/241 (59%), Positives = 174/241 (72%), Gaps = 22/241 (9%)

Query: 61  FKQPTFRIRSFNSE----GDENYVPEDSPDEQDQLANDEILKNKTVETSGFGSSFLAKLT 116
           F    +RI+  +S+    GD +   E S D +D+  N+ +        SG G  F+ KL 
Sbjct: 34  FSLTCYRIKVRSSQIGIVGDND--SEKSRDSKDEDENERV--------SGKGVPFIVKLG 83

Query: 117 IAVGVAATITLLSIGLKPPNLGTS--FGVQRLAEGSSSSLAMAAPSGFSFKVFGYKFILP 174
           + +G+A  IT++S+ LK    G S    V+ LA+ SSSS       GF+F  FG +F++P
Sbjct: 84  LGLGLAMIITVISVALKGSGGGGSPFEEVKSLAKVSSSS------EGFTFNAFGNRFMIP 137

Query: 175 EYAPGWIYFWLLMAAGSGLFVSEEALNIWVSISLARLLTLDGTWQSFAESFSRNAPYIVS 234
             APGW+YFWLLMAAG GLF+SEEALNIWV I+LAR+LTLDGTWQSFAESFSRNAPYIVS
Sbjct: 138 GNAPGWVYFWLLMAAGCGLFISEEALNIWVGITLARMLTLDGTWQSFAESFSRNAPYIVS 197

Query: 235 TVLWVYWGVCISDMIPFYLGKLFTKSGASDDVCSKLGISKEKALSITQSVQKYGNLIGFG 294
           TV WVYWGVC+SDMIPFY+GKLF +SGASDDVCSKLGI KEKALSITQ+VQKYGNL GF 
Sbjct: 198 TVSWVYWGVCLSDMIPFYIGKLFRQSGASDDVCSKLGIGKEKALSITQAVQKYGNLSGFV 257

Query: 295 E 295
           E
Sbjct: 258 E 258

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357138746|ref|XP_003570949.1| PREDICTED: uncharacterized protein LOC100833279 [Brachypodium distachyon]

 Score =  258 bits (659), Expect = 2e-66,   Method: Compositional matrix adjust.
 Identities = 126/205 (61%), Positives = 159/205 (77%)

Query: 95  EILKNKTVETSGFGSSFLAKLTIAVGVAATITLLSIGLKPPNLGTSFGVQRLAEGSSSSL 154
           E++    VE S  G+SFLAK+ +A+GVAAT+T +SI +K P+   SF + ++ +  + S 
Sbjct: 71  EVVDVLEVEPSNPGASFLAKVAVALGVAATVTAISIFMKQPSSVPSFSMPQIVDAYAQSD 130

Query: 155 AMAAPSGFSFKVFGYKFILPEYAPGWIYFWLLMAAGSGLFVSEEALNIWVSISLARLLTL 214
           A  A  G++F +FG K I+PEY PGW+YFWLLMAAG GLF+SEEALN+WV ISL+R L L
Sbjct: 131 AATATIGYTFSLFGKKVIIPEYTPGWVYFWLLMAAGFGLFISEEALNVWVGISLSRTLCL 190

Query: 215 DGTWQSFAESFSRNAPYIVSTVLWVYWGVCISDMIPFYLGKLFTKSGASDDVCSKLGISK 274
           DGTWQS   SFS NA YI+STVLWVYWGVCISDM+PFYLGKLF ++ AS+D+ SKLGI K
Sbjct: 191 DGTWQSLVNSFSMNASYIISTVLWVYWGVCISDMVPFYLGKLFRQTRASEDIYSKLGIGK 250

Query: 275 EKALSITQSVQKYGNLIGFGELKSL 299
           EKALS++ +VQKYGNLIGF E  S+
Sbjct: 251 EKALSVSHAVQKYGNLIGFVERFSI 275

Source: Brachypodium distachyon

Species: Brachypodium distachyon

Genus: Brachypodium

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|326518903|dbj|BAJ92612.1| predicted protein [Hordeum vulgare subsp. vulgare]

 Score =  256 bits (654), Expect = 9e-66,   Method: Compositional matrix adjust.
 Identities = 126/206 (61%), Positives = 160/206 (77%), Gaps = 4/206 (1%)

Query: 94  DEILKNKTVETSGFGSSFLAKLTIAVGVAATITLLSIGLKPPNLGTSFGVQRLAEGSSSS 153
            EI+    VE S  G+SFLAK+ +A+GVA T+T +SI +K P+ G SF + ++ + S+ S
Sbjct: 70  SEIIDAVEVEPSNPGASFLAKVAVALGVAVTVTAISIFMKQPSSGPSFSLPQIIDASAQS 129

Query: 154 LAMAAPSGFSFKVFGYKFILPEYAPGWIYFWLLMAAGSGLFVSEEALNIWVSISLARLLT 213
             +    G++F  FG K I+PEY PGW+YFWLLMAAG GLF+SEEALN+WV ISLAR L 
Sbjct: 130 DTV----GYTFSQFGKKVIIPEYTPGWVYFWLLMAAGFGLFISEEALNVWVGISLARTLC 185

Query: 214 LDGTWQSFAESFSRNAPYIVSTVLWVYWGVCISDMIPFYLGKLFTKSGASDDVCSKLGIS 273
           LDGTWQS   SFS N+ YI+STVLWVYWGVCISDM+PFYLGKLF ++ AS+D+ SKLGIS
Sbjct: 186 LDGTWQSLVNSFSTNSSYIISTVLWVYWGVCISDMVPFYLGKLFRQTRASEDIYSKLGIS 245

Query: 274 KEKALSITQSVQKYGNLIGFGELKSL 299
           KEKALS+++++QKYGNLIGF E  S+
Sbjct: 246 KEKALSVSRAIQKYGNLIGFVERFSI 271

Source: Hordeum vulgare subsp. vulgare

Species: Hordeum vulgare

Genus: Hordeum

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|326496210|dbj|BAJ94567.1| predicted protein [Hordeum vulgare subsp. vulgare]

 Score =  256 bits (653), Expect = 1e-65,   Method: Compositional matrix adjust.
 Identities = 126/206 (61%), Positives = 160/206 (77%), Gaps = 4/206 (1%)

Query: 94  DEILKNKTVETSGFGSSFLAKLTIAVGVAATITLLSIGLKPPNLGTSFGVQRLAEGSSSS 153
            EI+    VE S  G+SFLAK+ +A+GVA T+T +SI +K P+ G SF + ++ + S+ S
Sbjct: 67  SEIIDAVEVEPSNPGASFLAKVAVALGVAVTVTAISIFMKQPSSGPSFSLPQIIDASAQS 126

Query: 154 LAMAAPSGFSFKVFGYKFILPEYAPGWIYFWLLMAAGSGLFVSEEALNIWVSISLARLLT 213
             +    G++F  FG K I+PEY PGW+YFWLLMAAG GLF+SEEALN+WV ISLAR L 
Sbjct: 127 DTV----GYTFSQFGKKVIIPEYTPGWVYFWLLMAAGFGLFISEEALNVWVGISLARTLC 182

Query: 214 LDGTWQSFAESFSRNAPYIVSTVLWVYWGVCISDMIPFYLGKLFTKSGASDDVCSKLGIS 273
           LDGTWQS   SFS N+ YI+STVLWVYWGVCISDM+PFYLGKLF ++ AS+D+ SKLGIS
Sbjct: 183 LDGTWQSLVNSFSTNSSYIISTVLWVYWGVCISDMVPFYLGKLFRQTRASEDIYSKLGIS 242

Query: 274 KEKALSITQSVQKYGNLIGFGELKSL 299
           KEKALS+++++QKYGNLIGF E  S+
Sbjct: 243 KEKALSVSRAIQKYGNLIGFVERFSI 268

Source: Hordeum vulgare subsp. vulgare

Species: Hordeum vulgare

Genus: Hordeum

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255560143|ref|XP_002521089.1| conserved hypothetical protein [Ricinus communis] gi|223539658|gb|EEF41240.1| conserved hypothetical protein [Ricinus communis]

 Score =  243 bits (619), Expect = 9e-62,   Method: Compositional matrix adjust.
 Identities = 121/164 (73%), Positives = 140/164 (85%), Gaps = 3/164 (1%)

Query: 139 TSFGVQRLAEGSSSS---LAMAAPSGFSFKVFGYKFILPEYAPGWIYFWLLMAAGSGLFV 195
           ++ G+Q +AEGSSSS   +  +AP GFSFK FGY+ ILPEYAPGWIYFWLLMAAG GLF+
Sbjct: 10  SALGLQFVAEGSSSSSSSVMASAPVGFSFKAFGYRIILPEYAPGWIYFWLLMAAGCGLFI 69

Query: 196 SEEALNIWVSISLARLLTLDGTWQSFAESFSRNAPYIVSTVLWVYWGVCISDMIPFYLGK 255
           SEEALN+WV ISL+R+LT+DGTWQSF ESF R+APYI+STVLWVYWGVCISDMIPFYLGK
Sbjct: 70  SEEALNVWVGISLSRMLTVDGTWQSFVESFYRSAPYIMSTVLWVYWGVCISDMIPFYLGK 129

Query: 256 LFTKSGASDDVCSKLGISKEKALSITQSVQKYGNLIGFGELKSL 299
           LF +SGA+DD+ SKLGI +EK LSIT+ VQKYGNL G  E  SL
Sbjct: 130 LFRESGATDDIRSKLGIGEEKVLSITRVVQKYGNLAGLVERFSL 173

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|222622334|gb|EEE56466.1| hypothetical protein OsJ_05675 [Oryza sativa Japonica Group]

 Score =  227 bits (578), Expect = 6e-57,   Method: Compositional matrix adjust.
 Identities = 111/172 (64%), Positives = 140/172 (81%), Gaps = 1/172 (0%)

Query: 124 TITLLSIGLKPPNLGTSFGVQRLAEGSSSSLAMAAPSGFSFKVFGYKFILPEYAPGWIYF 183
           T T++S+ ++ P+ G SF + ++ + +S+    AA  G++F +FG K I+PEY PGW+YF
Sbjct: 642 TATVISLFMRQPSSGPSFSLPQIVD-ASAPPDAAATIGYTFSLFGKKVIVPEYTPGWVYF 700

Query: 184 WLLMAAGSGLFVSEEALNIWVSISLARLLTLDGTWQSFAESFSRNAPYIVSTVLWVYWGV 243
           WLLMAAG GLF+SEEALN+WV ISLAR L LDGTWQS A SFS NA YI+STVLWVYWGV
Sbjct: 701 WLLMAAGFGLFISEEALNVWVGISLARSLCLDGTWQSLANSFSMNASYIISTVLWVYWGV 760

Query: 244 CISDMIPFYLGKLFTKSGASDDVCSKLGISKEKALSITQSVQKYGNLIGFGE 295
           CISDM+PFYLGKLF ++ AS+D+ SK+GI KEKALSI+++VQKYGNLIGF E
Sbjct: 761 CISDMVPFYLGKLFRQTRASEDISSKIGIGKEKALSISRAVQKYGNLIGFVE 812

Source: Oryza sativa Japonica Group

Species: Oryza sativa

Genus: Oryza

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224069790|ref|XP_002303040.1| predicted protein [Populus trichocarpa] gi|222844766|gb|EEE82313.1| predicted protein [Populus trichocarpa]

 Score =  127 bits (318), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 81/190 (42%), Positives = 109/190 (57%), Gaps = 19/190 (10%)

Query: 1   MALVAILTHGQPLNSAKPTPKLSNLPPIKRTPNSCSFNNFSNTSREFLYEKITNFCTFQF 60
           MAL+++LTHG  LN  KP P+     P +R   +   N+  +  + F       FC    
Sbjct: 1   MALMSVLTHGSSLNLPKPAPRC--FSPSRRA-RALVLNHSRSGHKVF-------FCN--- 47

Query: 61  FKQPT-FRIRSFNSEGDENYVPEDSPDEQDQL--ANDEILKNKTVETSGFGSSFLAKLTI 117
            + P+ FRIR F S+   NY  E + D Q  L   +DE + NK  E +  GSSFL  L I
Sbjct: 48  -RGPSAFRIRRFQSKDSRNY--EAAKDTQGDLDLPSDEAVVNKKNEPTSTGSSFLLILAI 104

Query: 118 AVGVAATITLLSIGLKPPNLGTSFGVQRLAEGSSSSLAMAAPSGFSFKVFGYKFILPEYA 177
            +GVAA  T++S+GLK  + G+ FGVQ LAEGS S +  A+P GF+FK FGY+ ILPEYA
Sbjct: 105 VLGVAAIFTIMSVGLKQSSTGSFFGVQFLAEGSPSPVMAASPIGFTFKAFGYRIILPEYA 164

Query: 178 PGWIYFWLLM 187
           PG+     L+
Sbjct: 165 PGYAIILSLL 174

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	305
TAIR|locus:2119315	347	AT4G13150 "AT4G13150" [Arabido	0.668	0.587	0.651	1.1e-66

TAIR|locus:2119315 AT4G13150 "AT4G13150" [Arabidopsis thaliana (taxid:3702)]

 Score = 678 (243.7 bits), Expect = 1.1e-66, P = 1.1e-66
 Identities = 140/215 (65%), Positives = 167/215 (77%)

Query:    83 DSPDEQDQLANDEILKNKTVETSGFGSSFLAKLTIAVGVAATITLLSIGLKPPNLGTS-F 141
             D+  E+ + + DE  +N+ V  SG G  F+ KL + +G+A  IT++S+ LK    G S F
Sbjct:    53 DNDSEKSRDSKDED-ENERV--SGKGVPFIVKLGLGLGLAMIITVISVALKGSGGGGSPF 109

Query:   142 G-VQRLAEGSSSSLAMAAPSGFSFKVFGYKFILPEYAPGWIYFWLLMAAGSGLFVSEEAL 200
               V+ LA+ SSSS       GF+F  FG +F++P  APGW+YFWLLMAAG GLF+SEEAL
Sbjct:   110 EEVKSLAKVSSSS------EGFTFNAFGNRFMIPGNAPGWVYFWLLMAAGCGLFISEEAL 163

Query:   201 NIWVSISLARLLTLDGTWQSFAESFSRNAPYIVSTVLWVYWGVCISDMIPFYLGKLFTKS 260
             NIWV I+LAR+LTLDGTWQSFAESFSRNAPYIVSTV WVYWGVC+SDMIPFY+GKLF +S
Sbjct:   164 NIWVGITLARMLTLDGTWQSFAESFSRNAPYIVSTVSWVYWGVCLSDMIPFYIGKLFRQS 223

Query:   261 GASDDVCSKLGISKEKALSITQSVQKYGNLIGFGE 295
             GASDDVCSKLGI KEKALSITQ+VQKYGNL GF E
Sbjct:   224 GASDDVCSKLGIGKEKALSITQAVQKYGNLSGFVE 258


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.320   0.136   0.408    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      305       293   0.00091  115 3  11 22  0.38    34
                                                     33  0.44    37


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  1
  No. of states in DFA:  608 (65 KB)
  Total size of DFA:  207 KB (2115 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  23.00u 0.17s 23.17t   Elapsed:  00:00:01
  Total cpu time:  23.00u 0.17s 23.17t   Elapsed:  00:00:01
  Start:  Fri May 10 21:17:04 2013   End:  Fri May 10 21:17:05 2013

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0009507 "chloroplast" evidence=ISM

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	305
COG0586	208	DedA Uncharacterized membrane-associated protein [	99.23
PRK10847	219	hypothetical protein; Provisional	98.86
PF09335	123	SNARE_assoc: SNARE associated Golgi protein; Inter	97.81
PRK11624	285	cdsA CDP-diglyceride synthase; Provisional	85.69
COG0398	223	Uncharacterized conserved protein [Function unknow	85.45
COG1238	161	Predicted membrane protein [Function unknown]	81.07

>COG0586 DedA Uncharacterized membrane-associated protein [Function unknown]

Probab=99.23  E-value=1.6e-11  Score=106.27  Aligned_cols=100  Identities=16%  Similarity=0.176  Sum_probs=86.9

Q ss_pred             HHHHHHHHHhc---CCcccchhHHHHHHHHHHHHhhhcCCcchhhhhcccCCcchhhHHHHHHHHHhhhcchhhhhhhhh
Q 021943          180 WIYFWLLMAAG---SGLFVSEEALNIWVSISLARLLTLDGTWQSFAESFSRNAPYIVSTVLWVYWGVCISDMIPFYLGKL  256 (305)
Q Consensus       180 wv~F~LLmlAG---~nlpISEdal~i~~gi~~sr~l~ldgtwqs~~~sfs~~~~y~is~~lwvywG~~isdmIpFYiGKL  256 (305)
                      +..|.++.+-.   ++.||.+|++++.+|.++++                 ..-.....+++...|+.++|.+.||+||.
T Consensus        18 ~~~f~~~f~e~~l~~~~~lPge~iL~~~G~l~~~-----------------g~~~~~~~i~~~~lga~lGd~i~Y~iGr~   80 (208)
T COG0586          18 LGVFLILFLESGLLVGPPLPGEVLLLLAGALAAQ-----------------GKLNLWLVILVATLGALLGDLISYWIGRR   80 (208)
T ss_pred             HHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHhC-----------------CCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44455555444   89999999999999999998                 34455678899999999999999999999


Q ss_pred             hcccCCCcchhhhccCChHHHHHHHHHHHhhcceeEEeeee
Q 021943          257 FTKSGASDDVCSKLGISKEKALSITQSVQKYGNLIGFGELK  297 (305)
Q Consensus       257 ~~qsga~~r~~SKlgis~EK~~kI~~~vqKYGnLtgfVeRF  297 (305)
                      +|++.....+..+. +++++++|.++.+||||+.+-|++||
T Consensus        81 ~G~~~l~~~~~~~~-~~~~~l~~a~~~f~r~G~~~vf~~RF  120 (208)
T COG0586          81 FGRKLLRKLWSYRL-LKRKKLDKAELLFERHGLFAIFLGRF  120 (208)
T ss_pred             hcHHHHHhhhhhcc-CCHHHHHHHHHHHHHcCchhhhhhcc
Confidence            99999987776666 89999999999999999999999999

>PRK10847 hypothetical protein; Provisional

Probab=98.86  E-value=9.7e-09  Score=89.33  Aligned_cols=90  Identities=16%  Similarity=0.103  Sum_probs=73.6

Q ss_pred             CCcccchhHHHHHHHHHHHHhhhcCCcchhhhhcccCCcchhhHHHHHHHHHhhhcchhhhhhhhhhcccCCCcchhhhc
Q 021943          191 SGLFVSEEALNIWVSISLARLLTLDGTWQSFAESFSRNAPYIVSTVLWVYWGVCISDMIPFYLGKLFTKSGASDDVCSKL  270 (305)
Q Consensus       191 ~nlpISEdal~i~~gi~~sr~l~ldgtwqs~~~sfs~~~~y~is~~lwvywG~~isdmIpFYiGKL~~qsga~~r~~SKl  270 (305)
                      .+.|+..|.+++.+|+++++.               .........+++.+.|+.++|++.|++||.+|++..... ..|.
T Consensus        45 ~~~~lPge~~l~~~G~la~~~---------------~~~~~~~~~~~~a~~Ga~lG~~i~Y~lGr~~G~~~l~~~-~~~~  108 (219)
T PRK10847         45 VTPFLPGDSLLFVAGALASLP---------------TNDLNVHMMVALMLIAAIVGDAVNYTIGRLFGEKLFSNP-NSKI  108 (219)
T ss_pred             cCCCCCchHHHHHHHHHHhCC---------------CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHhhcc-cccc
Confidence            456789999999999998862               011234456788899999999999999999998876532 2444


Q ss_pred             cCChHHHHHHHHHHHhhcceeEEeeee
Q 021943          271 GISKEKALSITQSVQKYGNLIGFGELK  297 (305)
Q Consensus       271 gis~EK~~kI~~~vqKYGnLtgfVeRF  297 (305)
                       ++++++++..+.++|||..+.++.||
T Consensus       109 -~~~~~l~~~~~~~~r~G~~~v~i~Rf  134 (219)
T PRK10847        109 -FRRSYLDKTHQFYEKHGGKTIILARF  134 (219)
T ss_pred             -CCHHHHHHHHHHHHHcCCEEEEeeCC
Confidence             78899999999999999999999999

>PF09335 SNARE_assoc: SNARE associated Golgi protein; InterPro: IPR015414 This is a entry contains SNARE associated Golgi proteins

Probab=97.81  E-value=1.6e-05  Score=60.45  Aligned_cols=76  Identities=22%  Similarity=0.308  Sum_probs=57.4

Q ss_pred             hhHHHHHHHHHHHHhhhcCCcchhhhhcccCCcchhhHHHHHHHHHhhhcchhhhhhhhhhcccCCCcchhhhccCChHH
Q 021943          197 EEALNIWVSISLARLLTLDGTWQSFAESFSRNAPYIVSTVLWVYWGVCISDMIPFYLGKLFTKSGASDDVCSKLGISKEK  276 (305)
Q Consensus       197 Edal~i~~gi~~sr~l~ldgtwqs~~~sfs~~~~y~is~~lwvywG~~isdmIpFYiGKL~~qsga~~r~~SKlgis~EK  276 (305)
                      .|++++.+|.+..-       |               ..++..+.|+.++|++.|++||.++++...    +|+ ..+++
T Consensus         3 ~~~~~~~~g~~~g~-------~---------------~~~~~~~~g~~~g~~~~y~lgr~~~~~~~~----~~~-~~~~~   55 (123)
T PF09335_consen    3 GSILLIAAGALFGP-------W---------------LGFLIATLGAVLGSLLAYLLGRYFGRRRLR----RKL-RKKKR   55 (123)
T ss_pred             hHHHHHHHHHHHHH-------H---------------HHHHHHHHHHHHHHHHHHHHHHHHhHHHHH----HHh-cchHH
Confidence            56777777777633       2               367778899999999999999999984333    555 55555


Q ss_pred             HHH---HHHHHHhhcceeEEeeeeee
Q 021943          277 ALS---ITQSVQKYGNLIGFGELKSL  299 (305)
Q Consensus       277 ~~k---I~~~vqKYGnLtgfVeRFs~  299 (305)
                      .++   +.+.+||||.+..++.||.-
T Consensus        56 ~~~~~~~~~~~~~~g~~~l~~~~~~P   81 (123)
T PF09335_consen   56 IKRIERIERWFQKYGFWVLFLSRFIP   81 (123)
T ss_pred             HHHHHHHHHHHhhhhHHHHHHHHHHH
Confidence            555   99999999999888877653

The yeast member of this family (P36164 from SWISSPROT) localises with the t-SNARE Tlg2 [].

>PRK11624 cdsA CDP-diglyceride synthase; Provisional

Probab=85.69  E-value=0.5  Score=43.74  Aligned_cols=38  Identities=32%  Similarity=0.329  Sum_probs=30.7

Q ss_pred             hHHHHHHHHHhhhcchhhhhhhhhhcccCCCcchhhhccCChHH
Q 021943          233 VSTVLWVYWGVCISDMIPFYLGKLFTKSGASDDVCSKLGISKEK  276 (305)
Q Consensus       233 is~~lwvywG~~isdmIpFYiGKL~~qsga~~r~~SKlgis~EK  276 (305)
                      ...+++++.-+|.+|.-+|+.||.+|+...-    -|  |||+|
T Consensus       151 ~~~vl~l~~~vw~sDt~AYf~Gr~fGk~KL~----P~--ISPkK  188 (285)
T PRK11624        151 AWWLLYVMILVWGADSGAYMFGKLFGKHKLA----PK--VSPGK  188 (285)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhCCCCCC----Cc--CCCCC
Confidence            3467888888999999999999999987665    34  56666

>COG0398 Uncharacterized conserved protein [Function unknown]

Probab=85.45  E-value=0.71  Score=41.55  Aligned_cols=56  Identities=16%  Similarity=0.158  Sum_probs=45.1

Q ss_pred             HHHHHHhhhcchhhhhhhhhhcccCCCcchhhhccCChHHHHHHHHHHHhhcceeEEeeee
Q 021943          237 LWVYWGVCISDMIPFYLGKLFTKSGASDDVCSKLGISKEKALSITQSVQKYGNLIGFGELK  297 (305)
Q Consensus       237 lwvywG~~isdmIpFYiGKL~~qsga~~r~~SKlgis~EK~~kI~~~vqKYGnLtgfVeRF  297 (305)
                      +..+-|.-++..++|+++|.++++...    +++ -++|+++++.+-.+|+|....+.-|.
T Consensus        86 ~~s~~G~~~gs~~~Fll~R~~gr~~~~----~~~-~~~~~~~~~~~~~~~~g~~~i~~lrl  141 (223)
T COG0398          86 LYSLIGATAGSTLAFLLARYLGRDWVL----KFV-GGKEKVQRIDAGLERNGFWAILLLRL  141 (223)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhHHHHH----HHh-cccHHHHHHHHHHHhCChHHHHHHHH
Confidence            344567788899999999999987665    555 45689999999999999887776664

>COG1238 Predicted membrane protein [Function unknown]

Probab=81.07  E-value=0.38  Score=42.07  Aligned_cols=54  Identities=15%  Similarity=0.191  Sum_probs=41.8

Q ss_pred             HHhhhcchhhhhhhhhhcccCCCcchhhhccCChHHHHHHHH-HHHhhcceeEEeeeee
Q 021943          241 WGVCISDMIPFYLGKLFTKSGASDDVCSKLGISKEKALSITQ-SVQKYGNLIGFGELKS  298 (305)
Q Consensus       241 wG~~isdmIpFYiGKL~~qsga~~r~~SKlgis~EK~~kI~~-~vqKYGnLtgfVeRFs  298 (305)
                      -|.-++.++.|++||...+....    +|.--++|+.++..+ .|+|||.++.++-=|.
T Consensus        60 ~gs~lG~~~~y~lG~~~~~~~~~----~~~~~~~~~~~~~~~~~~~ryg~~~ll~s~lp  114 (161)
T COG1238          60 LGSVLGGLVNYALGRFLPEFIAR----RWFPGSEEALEKLQEKWYRRYGVWTLLLSWLP  114 (161)
T ss_pred             HHhhHhHHHHHHHHhcchHHHHH----HhhcchHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence            36668899999999999888777    354345788888887 9999999887654433

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	305
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-04
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	9e-04

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 42.9 bits (100), Expect = 1e-04
 Identities = 41/270 (15%), Positives = 77/270 (28%), Gaps = 57/270 (21%)

Query: 39  NFSNTSR-EFLYEKITNFCTFQFFKQPTFRIRSFNSEGDENYVPEDSPDEQDQLAN---- 93
           N  N +  E + E +     +Q    P +  RS +S      +       Q +L      
Sbjct: 188 NLKNCNSPETVLEMLQKLL-YQI--DPNWTSRSDHSSN----IKLRIHSIQAELRRLLKS 240

Query: 94  ----------DEILKNKTVETSGFGSSFL-----AKLTIAVGVAAT--ITL--LSIGLKP 134
                       +   K           L      ++T  +  A T  I+L   S+ L P
Sbjct: 241 KPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTP 300

Query: 135 PNLGTSFGVQRLAEGSSSSLAMAAPSG--FSFKVFGYKFILPEYAPGWIYFWLLMAAGSG 192
             + +     +  +     L     +       +      + +    W  +         
Sbjct: 301 DEVKSLLL--KYLDCRPQDLPREVLTTNPRRLSIIAES--IRDGLATWDNW--------- 347

Query: 193 LFVSEEALNIWVSISLARLLTLD--GTWQSFAESFSRNAPYIVSTVLWVYWGVCISDMIP 250
             V+ + L   +  SL  L   +    +   +  F  +A  I + +L + W   I   + 
Sbjct: 348 KHVNCDKLTTIIESSLNVLEPAEYRKMFDRLS-VFPPSAH-IPTILLSLIWFDVIKSDVM 405

Query: 251 FYLGKLFTKSGASDDVCSKLGISKEKALSI 280
             + KL   S             KE  +SI
Sbjct: 406 VVVNKLHKYSLVEKQ-------PKESTISI 428

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 39.8 bits (92), Expect = 9e-04
 Identities = 42/293 (14%), Positives = 70/293 (23%), Gaps = 117/293 (39%)

Query: 46  EFLYEKITNFCTFQFFKQPTFRIRSFNSEGDENY----------VPEDSPDEQ--DQLAN 93
           +FL   I         +QP+   R +  + D  Y          V    P  +    L  
Sbjct: 92  KFLMSPIKTEQ-----RQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLE 146

Query: 94  DEILKNKTVE-TSGFGSSFLAKLTIAVGVAATITLLSIGLKPPNLGTSFGVQRLAEGSSS 152
               KN  ++   G G +++A                          S+ VQ        
Sbjct: 147 LRPAKNVLIDGVLGSGKTWVALDVCL---------------------SYKVQCK------ 179

Query: 153 SLAMAAPSGFSFKVFGYKFILPEYAPGWIYF------WLLMAAGSGLFV---------SE 197
                      FK+F            W+          ++     L           S+
Sbjct: 180 ---------MDFKIF------------WLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSD 218

Query: 198 EALNI-----WVSISLAR----------LLTLDGTWQS-FAESF---------SRNAPYI 232
            + NI      +   L R          LL L     +    +F         +R     
Sbjct: 219 HSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQ-- 276

Query: 233 VSTVLWVYWGVCISDMIPFYLGKLFTKSGASDDVCSK-LGISKEK----ALSI 280
           V+  L       IS +    +    T       +  K L    +      L+ 
Sbjct: 277 VTDFLSAATTTHIS-LDHHSMT--LTPD-EVKSLLLKYLDCRPQDLPREVLTT 325

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00