Citrus Sinensis ID: 022035

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300---
Protein Sequence
MFEYLQTGSSLIEGRWQLMFTTRPGTASPIQRTFVGVETFSVFQEISLRTNDPRVSNIVKFSEAIGELKVEAAASIKDGKRILFQFDKAAFSFKFLPFKFPYPVPFRLLGDEAKGWLDTTYLSPSGNLRISRGNKGTTFVLQKKTEPRQTLLSAISTGTQVEQAINEFISSNQSTAEEERELLEGEWQMLWSSQMETDSWIENAGNGLMGKQIVKKNGQMKFEVDILLGFKFSMTGTYAKSSTNTYNVTMDDAAIICGGFGYPIKMETKINLQLLYSDDKMRISRGYNNILFVHLRTDGSNQK
Secondary Structure (PSIPRED)
cccccccccccccEEEEEEEEccccccccccccccccccccEEEEEEEEccccEEEEEEEccccccEEEEEEEEEEEcccEEEEEEEEEEEEEccccccccccccccccccccEEEEEEEEEcccccEEEEEcccccEEEEEcccccHHHHHccccccHHHHHHHHHHHHccccccHHHHccccccEEEEEEEcccccccccccccccccEEEEccccEEEEEEEEcccEEEEEEEEEEEccccEEEEEEEEcEEEEccEEEccccccEEEEEEEEEEccEEEEEcccccEEEEEEccccccc
Secondary Structure Prediction (SSPRO)
ccEEEEcccHHccccEEEEEEccccccccccccccccccccEEEEEEEEcccccEEEEEEcccccEEEEEEEEEEEccccEEEEEEEEEEEccccccccccccccccccccccccEEEEEEEcccccEEEEccccccEEEEEccccHHHHHHHHHHccccHHHHHHHHHHHccccccccHHHHcccEEEEEcccccccHHHHHHHccccccEEEEccccEEEEEEccccEEEEEEEEEEEccccEEEEEcccEEEEEccccccEcccccEEEEEEEEcccEEEEEccccEEEEEEEccccccc
Coil and Loop (DISEMBL)
MFEYLQTGSSLIEGRWQLmfttrpgtaspiqrtfvgvETFSVFQEIslrtndprvsniVKFSEAIGELKVEAAASIKDGKRILFQFDKaafsfkflpfkfpypvpfrllgdeakgwldttylspsgnlrisrgnkgttfvlqkkteprQTLLSAISTGTQVEQAINEFISSNQSTAEEERELLEGEWQMLWSSQMETDswienagnglmGKQIVKKNGQMKFEVDILLgfkfsmtgtyaksstntynvtmddaaiicggfgypikmETKINLQllysddkmrisrGYNNILFVHLrtdgsnqk
Flexible Loop (DISEMBL)
MFEYLQTGSSLIEGRWQLMFTTRPGTASPIQRTFVGVETFSVFQeislrtndprvsnIVKFSEAIGELKVEAAASIKDGKRILFQFDKAAFSFKFLPFKFPYPVPFRLLGDEAKGWLDTTylspsgnlrisrgnkgttfvlqkkteprqTLLSAISTGTQVEQAINEFISSNQSTAEEERELLEGEWQMLWSSQMETDSWIENAGNGLMGKQIVKKNGQMKFEVDILLGFKFSMTGTYAKSSTNTYNVTMDDAAIICGGFGYPIKMETKINLQLLYSDDKMRISRGYNNILFvhlrtdgsnqk
Low Complexity Region (SEG)
MFEYLQTGSSLIEGRWQLMFTTRPGTASPIQRTFVGVETFSVFQEISLRTNDPRVSNIVKFSEAIGELKVEAAASIKDGKRILFQFDKAAFSFKFLPFKFPYPVPFRLLGDEAKGWLDTTYLSPSGNLRISRGNKGTTFVLQKKTEPRQTLLSAISTGTQVEQAINEFISSNQSTAeeerellegeWQMLWSSQMETDSWIENAGNGLMGKQIVKKNGQMKFEVDILLGFKFSMTGTYAKSSTNTYNVTMDDAAIICGGFGYPIKMETKINLQLLYSDDKMRISRGYNNILFVHLRTDGSNQK
Disordered region (IsUnstruct)
********SSLIEGRWQLMFTTRPGTASPIQRTFVGVETFSVFQEISLRTNDPRVSNIVKFSEAIGELKVEAAASIKDGKRILFQFDKAAFSFKFLPFKFPYPVPFRLLGDEAKGWLDTTYLSPSGNLRISRGNKGTTFVL*****************************************LEGEWQMLWSSQMETDSWIENAGNGLMGKQIVKKNGQMKFEVDILLGFKFSMTGTYAKSSTNTYNVTMDDAAIICGGFGYPIKMETKINLQLLYSDDKMRISRGYNNILFVHLR*******
Disordered Region (DISOPRED)
***YLQTGSSLIEGRWQLMFTTRPGT***IQRTFVGVETFSVFQEISLRTNDPRVSNIVKFSEAIGELKVEAAASIKDGKRILFQFDKAAFSFKFLPFKFPYPVPFRLLGDEAKGWLDTTYLSPSGNLRISRGNKGTTFVLQKKTEP************Q*EQAI*******************GEWQMLWSSQME******NAGNGLMGKQIVKKNGQMKFEVDILLGFKFSMTGTYAKSSTNTYNVTMDDAAIICGGFGYPIKMETKINLQLLYSDDKMRISRGYNNILFVH**T******
Disordered Region (DISEMBL)
********SSLIEGRWQLMFTTRPGTASPIQRTFVGVETFSVFQEISLRTNDPRVSNIVKFSEAIGELKVEAAASIKDGKRILFQFDKAAFSFKFLPFKFPYPVPFRLLGDEAKGWLDTTYLSPSGNLRISRGNKGTTFVLQKKTEPRQTLLSAISTGTQVEQAINEFISSN*********LLEGEWQMLWSSQMETDSWIENAGNGLMGKQIVKKNGQMKFEVDILLGFKFSMTGTYAKSSTNTYNVTMDDAAIICGGFGYPIKMETKINLQLLYSDDKMRISRGYNNILFVHLRTDGSNQK
Disordered Region (DISPRO)
MFEYLQTGSSLIEGRWQLMFTTRPGTASPIQRTFVGVETFSVFQEISLRTNDPRVSNIVKFSEAIGELKVEAAASIKDGKRILFQFDKAAFSFKFLPFKFPYPVPFRLLGDEAKGWLDTTYLSPSGNLRISRGNKGTTFVLQKKTEPRQTLLSAISTGTQVEQAINEFISSNQSTAEEERELLEGEWQMLWSSQMETDSWIENAGNGLMGKQIVKKNGQMKFEVDILLGFKFSMTGTYAKSSTNTYNVTMDDAAIICGGFGYPIKMETKINLQLLYSDDKMRISRGYNNILFVHLRTD*****
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MFEYLQTGSSLIEGRWQLMFTTRPGTASPIQRTFVGVETFSVFQEISLRTNDPRVSNIVKFSEAIGELKVEAAASIKDGKRILFQFDKAAFSFKFLPFKFPYPVPFRLLGDEAKGWLDTTYLSPSGNLRISRGNKGTTFVLQKKTEPRQTLLSAISTGTQVEQAINEFISSNQSTAEEERELLEGEWQMLWSSQMETDSWIENAGNGLMGKQIVKKNGQMKFEVDILLGFKFSMTGTYAKSSTNTYNVTMDDAAIICGGFGYPIKMETKINLQLLYSDDKMRISRGYNNILFVHLRTDGSNQK
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	303	2.2.26 [Sep-21-2011]
Q8LAP6	409	Probable plastid-lipid-as	yes	no	0.957	0.709	0.714	1e-126
Q94KU6	319	Plastid lipid-associated	N/A	no	0.141	0.134	0.511	0.0004

>sp|Q8LAP6|PAP12_ARATH Probable plastid-lipid-associated protein 12, chloroplastic OS=Arabidopsis thaliana GN=PAP12 PE=2 SV=1

 Score =  450 bits (1158), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 208/291 (71%), Positives = 252/291 (86%), Gaps = 1/291 (0%)

Query: 7   TGSSLIEGRWQLMFTTRPGTASPIQRTFVGVETFSVFQEISLR-TNDPRVSNIVKFSEAI 65
           T S LIEGRW+LMFTTRPGTASPIQRTF GV+ F+VFQ++ L+ TNDPRVSNIVKFS+ I
Sbjct: 117 TDSDLIEGRWRLMFTTRPGTASPIQRTFTGVDVFTVFQDVYLKATNDPRVSNIVKFSDFI 176

Query: 66  GELKVEAAASIKDGKRILFQFDKAAFSFKFLPFKFPYPVPFRLLGDEAKGWLDTTYLSPS 125
           GELKVEA ASIKDGKR+LF+FD+AAF  KFLPFK PYPVPFRLLGDEAKGWLDTTYLSPS
Sbjct: 177 GELKVEAVASIKDGKRVLFRFDRAAFDLKFLPFKVPYPVPFRLLGDEAKGWLDTTYLSPS 236

Query: 126 GNLRISRGNKGTTFVLQKKTEPRQTLLSAISTGTQVEQAINEFISSNQSTAEEERELLEG 185
           GNLRISRGNKGTTFVLQK+T PRQ LL+ IS    V +AI+EF++SN ++AE+  ELLEG
Sbjct: 237 GNLRISRGNKGTTFVLQKETVPRQKLLATISQDKGVAEAIDEFLASNSNSAEDNYELLEG 296

Query: 186 EWQMLWSSQMETDSWIENAGNGLMGKQIVKKNGQMKFEVDILLGFKFSMTGTYAKSSTNT 245
            WQM+WSSQM TDSWIENA NGLMG+QI++K+G++KFEV+I+  F+FSM G + KS ++T
Sbjct: 297 SWQMIWSSQMYTDSWIENAANGLMGRQIIEKDGRIKFEVNIIPAFRFSMKGKFIKSESST 356

Query: 246 YNVTMDDAAIICGGFGYPIKMETKINLQLLYSDDKMRISRGYNNILFVHLR 296
           Y++ MDDAAII G FGYP+ +   I L++LY+D+KMRISRG++NI+FVH+R
Sbjct: 357 YDLKMDDAAIIGGAFGYPVDITNNIELKILYTDEKMRISRGFDNIIFVHIR 407

Arabidopsis thaliana (taxid: 3702)

>sp|Q94KU6|PAP2_BRACM Plastid lipid-associated protein 2, chloroplastic OS=Brassica campestris GN=PAP2 PE=1 SV=1

 Score = 45.8 bits (107), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 23/45 (51%), Positives = 30/45 (66%), Gaps = 2/45 (4%)

Query: 103 PVPFRLLGDEAKGWLDTTYLSPSGNLRISRGNKGTTFVLQKKTEP 147
           P+ F L GD A+ WL TTYL    ++RISRG+ G+ FVL K+  P
Sbjct: 273 PLKFSLPGDSAQSWLLTTYL--DKDIRISRGDGGSVFVLIKEGSP 315

May stabilize the accumulated carotenoid structures.

Brassica campestris (taxid: 3711)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	303
224053000	399	predicted protein [Populus trichocarpa]	0.980	0.744	0.831	1e-144
255574416	409	structural molecule, putative [Ricinus c	0.980	0.726	0.784	1e-140
449448776	436	PREDICTED: probable plastid-lipid-associ	0.973	0.676	0.783	1e-131
225435622	396	PREDICTED: probable plastid-lipid-associ	0.957	0.732	0.780	1e-130
356576885	377	PREDICTED: probable plastid-lipid-associ	0.966	0.777	0.750	1e-128
255646338	377	unknown [Glycine max]	0.966	0.777	0.737	1e-126
297847472	409	plastid-lipid associated protein pap [Ar	0.957	0.709	0.718	1e-124
30694898	409	putative plastid-lipid-associated protei	0.957	0.709	0.714	1e-124
388509688	380	unknown [Lotus japonicus]	0.960	0.765	0.75	1e-123
357445071	388	hypothetical protein MTR_1g116320 [Medic	0.966	0.755	0.737	1e-120

>gi|224053000|ref|XP_002297657.1| predicted protein [Populus trichocarpa] gi|222844915|gb|EEE82462.1| predicted protein [Populus trichocarpa]

 Score =  516 bits (1328), Expect = e-144,   Method: Compositional matrix adjust.
 Identities = 247/297 (83%), Positives = 271/297 (91%)

Query: 7   TGSSLIEGRWQLMFTTRPGTASPIQRTFVGVETFSVFQEISLRTNDPRVSNIVKFSEAIG 66
           TGS+LIEGRWQLMFTTRPGTASPIQRTFVGV+ FSVFQE+ LRTNDPRVSNIVKFS AIG
Sbjct: 103 TGSNLIEGRWQLMFTTRPGTASPIQRTFVGVDFFSVFQEVYLRTNDPRVSNIVKFSNAIG 162

Query: 67  ELKVEAAASIKDGKRILFQFDKAAFSFKFLPFKFPYPVPFRLLGDEAKGWLDTTYLSPSG 126
           ELKVEAAA+I++GKRILFQFD+AAFSF FLPFK PYPVPFRLLGDEAKGWLDTTYLSPSG
Sbjct: 163 ELKVEAAATIENGKRILFQFDRAAFSFNFLPFKVPYPVPFRLLGDEAKGWLDTTYLSPSG 222

Query: 127 NLRISRGNKGTTFVLQKKTEPRQTLLSAISTGTQVEQAINEFISSNQSTAEEERELLEGE 186
           NLRISRGNKGTTFVLQKKTEPRQ LLSAI TGT V +AINEFI  NQ+ A++E EL++GE
Sbjct: 223 NLRISRGNKGTTFVLQKKTEPRQRLLSAIWTGTGVLEAINEFIKLNQNVAKDEMELIDGE 282

Query: 187 WQMLWSSQMETDSWIENAGNGLMGKQIVKKNGQMKFEVDILLGFKFSMTGTYAKSSTNTY 246
           WQM+WSSQMETDSWIENAG GLMGKQIV KNGQ+KF VDILLG +FSMTGT+ KSS NTY
Sbjct: 283 WQMIWSSQMETDSWIENAGRGLMGKQIVTKNGQLKFVVDILLGVRFSMTGTFVKSSPNTY 342

Query: 247 NVTMDDAAIICGGFGYPIKMETKINLQLLYSDDKMRISRGYNNILFVHLRTDGSNQK 303
           +V MDDAAII G FG P++METKINL+LLYSDDK+RISRGY NI+FVH RTDG+ QK
Sbjct: 343 DVKMDDAAIIGGMFGLPVEMETKINLELLYSDDKIRISRGYKNIVFVHARTDGTRQK 399

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255574416|ref|XP_002528121.1| structural molecule, putative [Ricinus communis] gi|223532460|gb|EEF34251.1| structural molecule, putative [Ricinus communis]

 Score =  504 bits (1298), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 233/297 (78%), Positives = 272/297 (91%)

Query: 7   TGSSLIEGRWQLMFTTRPGTASPIQRTFVGVETFSVFQEISLRTNDPRVSNIVKFSEAIG 66
           T SSLIEG+WQLMFTTRPGTASPIQRTFVGV+ FSVFQE+ L+TNDPRVSNIV+FS+ IG
Sbjct: 113 TNSSLIEGQWQLMFTTRPGTASPIQRTFVGVDFFSVFQEVYLQTNDPRVSNIVRFSDVIG 172

Query: 67  ELKVEAAASIKDGKRILFQFDKAAFSFKFLPFKFPYPVPFRLLGDEAKGWLDTTYLSPSG 126
           ELKVEAAA+I++GKRI+F+FD+AAFS +FLPFK PYPVPFRLLGDEAKGWLDTTYLSPSG
Sbjct: 173 ELKVEAAAAIENGKRIIFRFDRAAFSLRFLPFKVPYPVPFRLLGDEAKGWLDTTYLSPSG 232

Query: 127 NLRISRGNKGTTFVLQKKTEPRQTLLSAISTGTQVEQAINEFISSNQSTAEEERELLEGE 186
           NLRISRGNKGTTFVLQK+TEPRQ LL+AISTGT+V++AI+EF+ +NQ  A +E ELLEGE
Sbjct: 233 NLRISRGNKGTTFVLQKRTEPRQALLAAISTGTKVKEAIDEFVEANQKVATDEIELLEGE 292

Query: 187 WQMLWSSQMETDSWIENAGNGLMGKQIVKKNGQMKFEVDILLGFKFSMTGTYAKSSTNTY 246
           WQM+WSSQ ETDSWIENAGNGLMGKQI+KKNGQ+KF VDI+ G +FSMTGTY KS T TY
Sbjct: 293 WQMIWSSQTETDSWIENAGNGLMGKQIIKKNGQLKFLVDIIFGLRFSMTGTYEKSGTKTY 352

Query: 247 NVTMDDAAIICGGFGYPIKMETKINLQLLYSDDKMRISRGYNNILFVHLRTDGSNQK 303
           NV MDDAAII G +G P++METKIN++LLY+D+K+RIS+GYN+I+FVH+RTDG  QK
Sbjct: 353 NVIMDDAAIIGGPYGLPVEMETKINMELLYADEKIRISKGYNSIVFVHVRTDGGEQK 409

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449448776|ref|XP_004142141.1| PREDICTED: probable plastid-lipid-associated protein 12, chloroplastic-like [Cucumis sativus] gi|449503596|ref|XP_004162081.1| PREDICTED: probable plastid-lipid-associated protein 12, chloroplastic-like [Cucumis sativus]

 Score =  475 bits (1222), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 232/296 (78%), Positives = 256/296 (86%), Gaps = 1/296 (0%)

Query: 7   TGSSLIEGRWQLMFTTRPGTASPIQRTFVGVETFSVFQEISLRTNDPRVSNIVKFSEAIG 66
           T SSLIEGRWQL+FTTRPGTAS IQRTFVGV+ FSVFQEI LRTNDPRVSNIVKFS+AIG
Sbjct: 141 TNSSLIEGRWQLVFTTRPGTASIIQRTFVGVDFFSVFQEIFLRTNDPRVSNIVKFSDAIG 200

Query: 67  ELKVEAAASIKDGKRILFQFDKAAFSFKFLPFKFPYPVPFRLLGDEAKGWLDTTYLSPSG 126
           ELKVEAAAS+KDGKRILFQFD+AAFSFKFLPFK PYPVPF+LLGDEAKGWLDTTYLSPSG
Sbjct: 201 ELKVEAAASVKDGKRILFQFDRAAFSFKFLPFKVPYPVPFKLLGDEAKGWLDTTYLSPSG 260

Query: 127 NLRISRGNKGTTFVLQKKTEPRQTLLSAISTGTQVEQAINEFISSNQSTAEEERELLEGE 186
           NLRISRGNKGTTFVLQK+TE RQ LL AIST   VE+AI++ IS NQ+  + E ELLEG 
Sbjct: 261 NLRISRGNKGTTFVLQKQTEARQKLLLAISTDKGVEEAIDKLISENQNENKFEEELLEGG 320

Query: 187 WQMLWSSQMETDSWIENAGNGLMGKQIVKKNGQMKFEVDILLGFKFSMTGTYAKSSTNTY 246
           W MLWSSQMETDSWIENA NGLMG Q++ KNGQMKF VD+LLG +FSM GT  KS  N Y
Sbjct: 321 WNMLWSSQMETDSWIENAANGLMGMQVI-KNGQMKFGVDMLLGLRFSMIGTLVKSGDNAY 379

Query: 247 NVTMDDAAIICGGFGYPIKMETKINLQLLYSDDKMRISRGYNNILFVHLRTDGSNQ 302
           +VTMDDAAII G FGYP+ ME++  LQLLY+D K+RI+RGYNNILFVH+R   S Q
Sbjct: 380 DVTMDDAAIIGGPFGYPLGMESRFKLQLLYNDGKIRITRGYNNILFVHVRVAESKQ 435

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225435622|ref|XP_002283329.1| PREDICTED: probable plastid-lipid-associated protein 12, chloroplastic [Vitis vinifera] gi|297746405|emb|CBI16461.3| unnamed protein product [Vitis vinifera]

 Score =  470 bits (1210), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 227/291 (78%), Positives = 253/291 (86%), Gaps = 1/291 (0%)

Query: 7   TGSSLIEGRWQLMFTTRPGTASPIQRTFVGVETFSVFQEISLRTNDPRVSNIVKFSEAIG 66
           T SSLIEGRWQLMFTTRPGTASPIQRTFVGV+ F+VFQE+ LRT+DPRVSNIV+FSEAIG
Sbjct: 106 TSSSLIEGRWQLMFTTRPGTASPIQRTFVGVDNFNVFQEVYLRTDDPRVSNIVRFSEAIG 165

Query: 67  ELKVEAAASIKDGKRILFQFDKAAFSFKFLPFKFPYPVPFRLLGDEAKGWLDTTYLSPSG 126
           ELKVEAAASIKDGKRILF+FD+AAFSFKFLPFK PYPVPFRLLGDEAKGWLDTTYLS SG
Sbjct: 166 ELKVEAAASIKDGKRILFRFDRAAFSFKFLPFKVPYPVPFRLLGDEAKGWLDTTYLSQSG 225

Query: 127 NLRISRGNKGTTFVLQKKTEPRQTLLSAISTGTQVEQAINEFISSNQSTAEEERELLEGE 186
           NLRISRGNKGTTFVLQK TEPRQ  LS IS GT V +AINEFIS NQ+ A  E +LLEGE
Sbjct: 226 NLRISRGNKGTTFVLQKNTEPRQRFLSVISKGTGVMEAINEFISLNQNKATGEPQLLEGE 285

Query: 187 WQMLWSSQMETDSWIENAGNGLMGKQIVKKNGQMKFEVDILLGFKFSMTGTYAKSSTNTY 246
           WQM+WSSQ ETDSW+ENA NGLMG QIVK   Q+KF VDILLGF+FSM GT+ K+   TY
Sbjct: 286 WQMIWSSQQETDSWLENAANGLMGTQIVKGE-QLKFVVDILLGFRFSMIGTFVKTGATTY 344

Query: 247 NVTMDDAAIICGGFGYPIKMETKINLQLLYSDDKMRISRGYNNILFVHLRT 297
            VTM+DAAI+ G  G P++ME+K NL+LLY+DDK+RI+RG+ NI FVHLR 
Sbjct: 345 EVTMNDAAIVAGPVGLPMEMESKFNLELLYTDDKIRITRGFRNITFVHLRV 395

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356576885|ref|XP_003556560.1| PREDICTED: probable plastid-lipid-associated protein 12, chloroplastic-like [Glycine max]

 Score =  465 bits (1197), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 220/293 (75%), Positives = 258/293 (88%)

Query: 7   TGSSLIEGRWQLMFTTRPGTASPIQRTFVGVETFSVFQEISLRTNDPRVSNIVKFSEAIG 66
           T S+LIEGRWQL+FTTRPGTASPIQRTFVGV+ FSVFQE+ LRTNDPRV NIV FS+AIG
Sbjct: 83  TKSNLIEGRWQLIFTTRPGTASPIQRTFVGVDFFSVFQEVYLRTNDPRVCNIVSFSDAIG 142

Query: 67  ELKVEAAASIKDGKRILFQFDKAAFSFKFLPFKFPYPVPFRLLGDEAKGWLDTTYLSPSG 126
           ELKVEAAASI+DGKRILF+FD+AAFSFKFLPFK PYPVPFRLLGDEAKGWLDTTYLS SG
Sbjct: 143 ELKVEAAASIEDGKRILFRFDRAAFSFKFLPFKVPYPVPFRLLGDEAKGWLDTTYLSSSG 202

Query: 127 NLRISRGNKGTTFVLQKKTEPRQTLLSAISTGTQVEQAINEFISSNQSTAEEERELLEGE 186
           NLRISRGNKGTTFVLQK+TEPRQ LL+AIS+G  +++AI+E IS  Q+T +E+ EL EGE
Sbjct: 203 NLRISRGNKGTTFVLQKQTEPRQRLLTAISSGKGIKEAIDELISLKQNTGQEDPELEEGE 262

Query: 187 WQMLWSSQMETDSWIENAGNGLMGKQIVKKNGQMKFEVDILLGFKFSMTGTYAKSSTNTY 246
           WQM+W+SQ  TDSWIENA NGLMGKQI++KNG++KF VDILLG KFSM+G + K+ +  Y
Sbjct: 263 WQMMWNSQTVTDSWIENAVNGLMGKQIIRKNGRIKFLVDILLGLKFSMSGNFVKTGSGVY 322

Query: 247 NVTMDDAAIICGGFGYPIKMETKINLQLLYSDDKMRISRGYNNILFVHLRTDG 299
            VTMDDAAII G FGYP++++    L+LLYSD+K+R+SRG N+ILFVH+RTD 
Sbjct: 323 GVTMDDAAIIGGPFGYPLELKNNFILELLYSDEKLRVSRGNNSILFVHVRTDA 375

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255646338|gb|ACU23652.1| unknown [Glycine max]

 Score =  455 bits (1171), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 216/293 (73%), Positives = 255/293 (87%)

Query: 7   TGSSLIEGRWQLMFTTRPGTASPIQRTFVGVETFSVFQEISLRTNDPRVSNIVKFSEAIG 66
           T S+LIEGRWQL+FTTRPGTASPIQRTFVGV+ FSVFQE+ LRTNDPRV NIV FS+AIG
Sbjct: 83  TKSNLIEGRWQLIFTTRPGTASPIQRTFVGVDFFSVFQEVYLRTNDPRVCNIVSFSDAIG 142

Query: 67  ELKVEAAASIKDGKRILFQFDKAAFSFKFLPFKFPYPVPFRLLGDEAKGWLDTTYLSPSG 126
           ELKVEAAASI+DGKRI F+F++AAFSFKFLPFK PYPVPFRLLGDEAKG LDTTYLS SG
Sbjct: 143 ELKVEAAASIEDGKRIHFRFNRAAFSFKFLPFKVPYPVPFRLLGDEAKGRLDTTYLSSSG 202

Query: 127 NLRISRGNKGTTFVLQKKTEPRQTLLSAISTGTQVEQAINEFISSNQSTAEEERELLEGE 186
           NLRISRGNKGTTF LQK+TEPRQ LL+AIS+G  +++AI+E IS  Q+T +E+ EL EGE
Sbjct: 203 NLRISRGNKGTTFALQKQTEPRQRLLTAISSGKGIKEAIDELISLKQNTGQEDPELEEGE 262

Query: 187 WQMLWSSQMETDSWIENAGNGLMGKQIVKKNGQMKFEVDILLGFKFSMTGTYAKSSTNTY 246
           WQM+W+SQ  TDSWIENA NGLMGKQI++KNG++KF VDILLG KFSM+G + K+ +  Y
Sbjct: 263 WQMMWNSQTVTDSWIENAVNGLMGKQIIRKNGRIKFLVDILLGLKFSMSGNFVKTGSGVY 322

Query: 247 NVTMDDAAIICGGFGYPIKMETKINLQLLYSDDKMRISRGYNNILFVHLRTDG 299
            VTMDDAAII G FGYP++++    L+LLYSD+K+R+SRG N+ILFVH+RTD 
Sbjct: 323 GVTMDDAAIIGGPFGYPLELKNNFILELLYSDEKLRVSRGNNSILFVHVRTDA 375

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297847472|ref|XP_002891617.1| plastid-lipid associated protein pap [Arabidopsis lyrata subsp. lyrata] gi|297337459|gb|EFH67876.1| plastid-lipid associated protein pap [Arabidopsis lyrata subsp. lyrata]

 Score =  452 bits (1162), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 209/291 (71%), Positives = 254/291 (87%), Gaps = 1/291 (0%)

Query: 7   TGSSLIEGRWQLMFTTRPGTASPIQRTFVGVETFSVFQEISLRT-NDPRVSNIVKFSEAI 65
           T S LIEGRW+LMFTTRPGTASPIQRTF GV+ F+VFQ++ L+T NDPRVSNIVKFS+ I
Sbjct: 117 TDSDLIEGRWRLMFTTRPGTASPIQRTFTGVDVFTVFQDVYLKTTNDPRVSNIVKFSDFI 176

Query: 66  GELKVEAAASIKDGKRILFQFDKAAFSFKFLPFKFPYPVPFRLLGDEAKGWLDTTYLSPS 125
           GELKVEAAASIKDGKR+LF+FD+AAFS KFLPFK PYPVPFRLLGDEAKGWLDTTYLSPS
Sbjct: 177 GELKVEAAASIKDGKRVLFRFDRAAFSLKFLPFKVPYPVPFRLLGDEAKGWLDTTYLSPS 236

Query: 126 GNLRISRGNKGTTFVLQKKTEPRQTLLSAISTGTQVEQAINEFISSNQSTAEEERELLEG 185
           GNLRISRGNKGTTFVLQK+T PRQ LL+ IS    V +AI+EF+++N + AE++ ELLEG
Sbjct: 237 GNLRISRGNKGTTFVLQKETLPRQKLLATISQDKGVAEAIDEFLATNSNPAEDDYELLEG 296

Query: 186 EWQMLWSSQMETDSWIENAGNGLMGKQIVKKNGQMKFEVDILLGFKFSMTGTYAKSSTNT 245
            WQM+WSSQM TDSWIENA NGLMG+QI++K+G++KFEV+I+  F+FSM G + KS ++T
Sbjct: 297 SWQMIWSSQMFTDSWIENAANGLMGRQIIEKDGRIKFEVNIIPAFRFSMKGKFIKSESST 356

Query: 246 YNVTMDDAAIICGGFGYPIKMETKINLQLLYSDDKMRISRGYNNILFVHLR 296
           YN+ MDDAAII G FGYP+ +   I L++LY+D+K+RISRG++NI+FVH+R
Sbjct: 357 YNLKMDDAAIIGGAFGYPVDITNNIELKILYTDEKLRISRGFDNIIFVHIR 407

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|30694898|ref|NP_175522.2| putative plastid-lipid-associated protein 12 [Arabidopsis thaliana] gi|75154826|sp|Q8LAP6.1|PAP12_ARATH RecName: Full=Probable plastid-lipid-associated protein 12, chloroplastic; AltName: Full=Fibrillin-12; Flags: Precursor gi|21593276|gb|AAM65225.1| unknown [Arabidopsis thaliana] gi|26452116|dbj|BAC43147.1| unknown protein [Arabidopsis thaliana] gi|28950975|gb|AAO63411.1| At1g51115 [Arabidopsis thaliana] gi|332194502|gb|AEE32623.1| putative plastid-lipid-associated protein 12 [Arabidopsis thaliana]

 Score =  450 bits (1158), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 208/291 (71%), Positives = 252/291 (86%), Gaps = 1/291 (0%)

Query: 7   TGSSLIEGRWQLMFTTRPGTASPIQRTFVGVETFSVFQEISLR-TNDPRVSNIVKFSEAI 65
           T S LIEGRW+LMFTTRPGTASPIQRTF GV+ F+VFQ++ L+ TNDPRVSNIVKFS+ I
Sbjct: 117 TDSDLIEGRWRLMFTTRPGTASPIQRTFTGVDVFTVFQDVYLKATNDPRVSNIVKFSDFI 176

Query: 66  GELKVEAAASIKDGKRILFQFDKAAFSFKFLPFKFPYPVPFRLLGDEAKGWLDTTYLSPS 125
           GELKVEA ASIKDGKR+LF+FD+AAF  KFLPFK PYPVPFRLLGDEAKGWLDTTYLSPS
Sbjct: 177 GELKVEAVASIKDGKRVLFRFDRAAFDLKFLPFKVPYPVPFRLLGDEAKGWLDTTYLSPS 236

Query: 126 GNLRISRGNKGTTFVLQKKTEPRQTLLSAISTGTQVEQAINEFISSNQSTAEEERELLEG 185
           GNLRISRGNKGTTFVLQK+T PRQ LL+ IS    V +AI+EF++SN ++AE+  ELLEG
Sbjct: 237 GNLRISRGNKGTTFVLQKETVPRQKLLATISQDKGVAEAIDEFLASNSNSAEDNYELLEG 296

Query: 186 EWQMLWSSQMETDSWIENAGNGLMGKQIVKKNGQMKFEVDILLGFKFSMTGTYAKSSTNT 245
            WQM+WSSQM TDSWIENA NGLMG+QI++K+G++KFEV+I+  F+FSM G + KS ++T
Sbjct: 297 SWQMIWSSQMYTDSWIENAANGLMGRQIIEKDGRIKFEVNIIPAFRFSMKGKFIKSESST 356

Query: 246 YNVTMDDAAIICGGFGYPIKMETKINLQLLYSDDKMRISRGYNNILFVHLR 296
           Y++ MDDAAII G FGYP+ +   I L++LY+D+KMRISRG++NI+FVH+R
Sbjct: 357 YDLKMDDAAIIGGAFGYPVDITNNIELKILYTDEKMRISRGFDNIIFVHIR 407

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388509688|gb|AFK42910.1| unknown [Lotus japonicus]

 Score =  445 bits (1145), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 219/292 (75%), Positives = 249/292 (85%), Gaps = 1/292 (0%)

Query: 7   TGSSLIEGRWQLMFTTRPGTASPIQRTFVGVETFSVFQEISLRTNDPRVSNIVKFSEAIG 66
           T S+LIEGRWQL FTTRPGTASPIQRTFVGV+ FSVFQEISLRTNDPRV NIV FS+AIG
Sbjct: 87  TNSNLIEGRWQLAFTTRPGTASPIQRTFVGVDFFSVFQEISLRTNDPRVGNIVSFSDAIG 146

Query: 67  ELKVEAAASIKDGKRILFQFDKAAFSFKFLPFKFPYPVPFRLLGDEAKGWLDTTYLSPSG 126
           ELKVEAAASI+DGKRILF+FD+AAFSFKFLPFK PYPVPF+LLGDEAKGWLDTTYLS SG
Sbjct: 147 ELKVEAAASIEDGKRILFRFDRAAFSFKFLPFKVPYPVPFKLLGDEAKGWLDTTYLSHSG 206

Query: 127 NLRISRGNKGTTFVLQKKTEPRQTLLSAISTGTQVEQAINEFISSNQSTAEEERELLEGE 186
           NLRIS+GNKGTTFVLQK+TEPRQ LL+AIS+G  V++AI+E IS  ++T EE       E
Sbjct: 207 NLRISKGNKGTTFVLQKQTEPRQRLLTAISSGKGVKEAIDELISLKKNTGEEPELEEG-E 265

Query: 187 WQMLWSSQMETDSWIENAGNGLMGKQIVKKNGQMKFEVDILLGFKFSMTGTYAKSSTNTY 246
           WQM+W+SQ  TDSW+ENA NGLMGKQI+ KNGQ+KF VDILLG KFSMTG + K  +  Y
Sbjct: 266 WQMIWNSQSVTDSWLENAANGLMGKQIIGKNGQIKFLVDILLGLKFSMTGNFIKIGSKMY 325

Query: 247 NVTMDDAAIICGGFGYPIKMETKINLQLLYSDDKMRISRGYNNILFVHLRTD 298
            VTMDDAAII G FG P+ ME K  L+LL+SD K+RISRGYN +LFVH+R+D
Sbjct: 326 EVTMDDAAIIGGAFGLPLNMENKFVLELLFSDKKVRISRGYNEVLFVHIRSD 377

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357445071|ref|XP_003592813.1| hypothetical protein MTR_1g116320 [Medicago truncatula] gi|355481861|gb|AES63064.1| hypothetical protein MTR_1g116320 [Medicago truncatula]

 Score =  437 bits (1123), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 216/293 (73%), Positives = 254/293 (86%)

Query: 7   TGSSLIEGRWQLMFTTRPGTASPIQRTFVGVETFSVFQEISLRTNDPRVSNIVKFSEAIG 66
           T SSLIEGRWQL+FTTRPGTASPIQRTFVGV+ FSVFQE+ L+TNDPRV+NIV FS+AIG
Sbjct: 95  TNSSLIEGRWQLIFTTRPGTASPIQRTFVGVDFFSVFQEVYLQTNDPRVTNIVSFSDAIG 154

Query: 67  ELKVEAAASIKDGKRILFQFDKAAFSFKFLPFKFPYPVPFRLLGDEAKGWLDTTYLSPSG 126
           ELKVEAAASI DGKRILF+FD+AAFSFKFLPFK PYPVPF+LLGDEAKGWLDTTYLS SG
Sbjct: 155 ELKVEAAASIGDGKRILFRFDRAAFSFKFLPFKVPYPVPFKLLGDEAKGWLDTTYLSHSG 214

Query: 127 NLRISRGNKGTTFVLQKKTEPRQTLLSAISTGTQVEQAINEFISSNQSTAEEERELLEGE 186
           NLRISRGNKGTTFVLQK+TEPRQ LL+AIS+G  V +AI++ IS N+++ EE+ EL EGE
Sbjct: 215 NLRISRGNKGTTFVLQKQTEPRQKLLTAISSGVGVREAIDKLISLNKNSGEEDPELEEGE 274

Query: 187 WQMLWSSQMETDSWIENAGNGLMGKQIVKKNGQMKFEVDILLGFKFSMTGTYAKSSTNTY 246
           WQM+W+SQ  TDSW+ENA NGLMGKQIV+KNG++K+ V+ILLG KFSM+G + KSS   Y
Sbjct: 275 WQMIWNSQTVTDSWLENAANGLMGKQIVEKNGRIKYVVNILLGLKFSMSGIFVKSSPKVY 334

Query: 247 NVTMDDAAIICGGFGYPIKMETKINLQLLYSDDKMRISRGYNNILFVHLRTDG 299
            VTMDDAAII G FGYP++   K  L++L++D K+RISRG N I+FVH RT+ 
Sbjct: 335 EVTMDDAAIIGGPFGYPLEFGKKFILEILFNDGKVRISRGDNEIIFVHARTNA 387

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	303
TAIR|locus:2026052	409	AT1G51110 [Arabidopsis thalian	0.957	0.709	0.694	4.3e-109
TAIR|locus:2132006	310	AT4G22240 [Arabidopsis thalian	0.141	0.138	0.488	2.9e-05
UNIPROTKB|P80471	326	P80471 "Light-induced protein,	0.141	0.131	0.466	0.00077
TAIR|locus:2136627	318	FIB "fibrillin" [Arabidopsis t	0.132	0.125	0.476	0.0009

TAIR|locus:2026052 AT1G51110 [Arabidopsis thaliana (taxid:3702)]

 Score = 1078 (384.5 bits), Expect = 4.3e-109, P = 4.3e-109
 Identities = 202/291 (69%), Positives = 245/291 (84%)

Query:     7 TGSSLIEGRWQLMFTTRPGTASPIQRTFVGVETFSVFQEISLR-TNDPRVSNIVKFSEAI 65
             T S LIEGRW+LMFTTRPGTASPIQRTF GV+ F+VFQ++ L+ TNDPRVSNIVKFS+ I
Sbjct:   117 TDSDLIEGRWRLMFTTRPGTASPIQRTFTGVDVFTVFQDVYLKATNDPRVSNIVKFSDFI 176

Query:    66 GELKVEAAASIKDGKRILFQFDKAAFSFKFLPFKFPYPVPFRLLGDEAKGWLDTTYLSPS 125
             GELKVEA ASIKDGKR+LF+FD+AAF  KFLPFK PYPVPFRLLGDEAKGWLDTTYLSPS
Sbjct:   177 GELKVEAVASIKDGKRVLFRFDRAAFDLKFLPFKVPYPVPFRLLGDEAKGWLDTTYLSPS 236

Query:   126 GNLRISRGNKGTTFVLQKKTEPRQTLLSAISTGTQVEQAINEFISSNQSTAXXXXXXXXX 185
             GNLRISRGNKGTTFVLQK+T PRQ LL+ IS    V +AI+EF++SN ++A         
Sbjct:   237 GNLRISRGNKGTTFVLQKETVPRQKLLATISQDKGVAEAIDEFLASNSNSAEDNYELLEG 296

Query:   186 XWQMLWSSQMETDSWIENAGNGLMGKQIVKKNGQMKFEVDILLGFKFSMTGTYAKSSTNT 245
              WQM+WSSQM TDSWIENA NGLMG+QI++K+G++KFEV+I+  F+FSM G + KS ++T
Sbjct:   297 SWQMIWSSQMYTDSWIENAANGLMGRQIIEKDGRIKFEVNIIPAFRFSMKGKFIKSESST 356

Query:   246 YNVTMDDAAIICGGFGYPIKMETKINLQLLYSDDKMRISRGYNNILFVHLR 296
             Y++ MDDAAII G FGYP+ +   I L++LY+D+KMRISRG++NI+FVH+R
Sbjct:   357 YDLKMDDAAIIGGAFGYPVDITNNIELKILYTDEKMRISRGFDNIIFVHIR 407

GO:0005198 "structural molecule activity" evidence=IEA;ISS

GO:0009507 "chloroplast" evidence=ISM;IEA;IDA

GO:0009535 "chloroplast thylakoid membrane" evidence=IDA

GO:0016020 "membrane" evidence=IDA

GO:0009534 "chloroplast thylakoid" evidence=IDA

GO:0009941 "chloroplast envelope" evidence=IDA

GO:0006098 "pentose-phosphate shunt" evidence=RCA

GO:0010027 "thylakoid membrane organization" evidence=RCA

TAIR|locus:2132006 AT4G22240 [Arabidopsis thaliana (taxid:3702)]

 Score = 99 (39.9 bits), Expect = 2.9e-05, Sum P(2) = 2.9e-05
 Identities = 22/45 (48%), Positives = 29/45 (64%)

Query:   103 PVPFRLLGDEAKGWLDTTYLSPSGNLRISRGNKGTTFVLQKKTEP 147
             P+ F L  D A+ WL TTYL    ++RISRG+ G+ FVL K+  P
Sbjct:   264 PLKFSLPADNAQSWLLTTYLDK--DIRISRGDGGSVFVLIKEGSP 306

GO:0005198 "structural molecule activity" evidence=IEA;ISS

GO:0008150 "biological_process" evidence=ND

GO:0009507 "chloroplast" evidence=ISM;IEA;IDA

GO:0031977 "thylakoid lumen" evidence=IDA

GO:0009579 "thylakoid" evidence=IDA

GO:0009535 "chloroplast thylakoid membrane" evidence=IDA

GO:0010287 "plastoglobule" evidence=IDA

GO:0009534 "chloroplast thylakoid" evidence=IDA

UNIPROTKB|P80471 P80471 "Light-induced protein, chloroplastic" [Solanum tuberosum (taxid:4113)]

 Score = 97 (39.2 bits), Expect = 0.00077, Sum P(2) = 0.00077
 Identities = 21/45 (46%), Positives = 28/45 (62%)

Query:   103 PVPFRLLGDEAKGWLDTTYLSPSGNLRISRGNKGTTFVLQKKTEP 147
             P+ F +  + A+ WL TTYL     LRISRG+ G+ FVL K+  P
Sbjct:   280 PIKFPITNNNAQSWLLTTYLDDE--LRISRGDAGSVFVLIKEGSP 322

GO:0003674 "molecular_function" evidence=ND

GO:0006950 "response to stress" evidence=IEP

GO:0009535 "chloroplast thylakoid membrane" evidence=IDA

TAIR|locus:2136627 FIB "fibrillin" [Arabidopsis thaliana (taxid:3702)]

 Score = 89 (36.4 bits), Expect = 0.00090, Sum P(2) = 0.00090
 Identities = 20/42 (47%), Positives = 27/42 (64%)

Query:   103 PVPFRLLGDEAKGWLDTTYLSPSGNLRISRGNKGTTFVLQKK 144
             P+ F L  D  + WL TTYL    +LRISRG+ G+ +VL K+
Sbjct:   272 PLKFSLPSDNTQSWLLTTYLDK--DLRISRGDGGSVYVLIKE 311

GO:0005198 "structural molecule activity" evidence=IEA;ISS

GO:0009507 "chloroplast" evidence=ISM;IEA;IDA

GO:0031977 "thylakoid lumen" evidence=IDA

GO:0009579 "thylakoid" evidence=IDA

GO:0005634 "nucleus" evidence=IDA

GO:0009535 "chloroplast thylakoid membrane" evidence=IDA

GO:0009570 "chloroplast stroma" evidence=IDA

GO:0010287 "plastoglobule" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0009737 "response to abscisic acid stimulus" evidence=IEP

GO:0010205 "photoinhibition" evidence=IMP

GO:0009409 "response to cold" evidence=IEP

GO:0010319 "stromule" evidence=IDA

GO:0009534 "chloroplast thylakoid" evidence=IDA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q8LAP6	PAP12_ARATH	No assigned EC number	0.7147	0.9570	0.7090	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	303
pfam04755	196	pfam04755, PAP_fibrillin, PAP_fibrillin	7e-36

>gnl|CDD|218245 pfam04755, PAP_fibrillin, PAP_fibrillin

 Score =  127 bits (321), Expect = 7e-36
 Identities = 49/151 (32%), Positives = 71/151 (47%), Gaps = 23/151 (15%)

Query: 10  SLIEGRWQLMFTTRPGTASPIQRTFVG-VETFSVFQEISLRTNDPRVSNIVKFSE--AIG 66
            L+ G+W+L++TT       + R  +  ++   ++Q I    N+  V N V FS   A G
Sbjct: 49  DLLNGKWRLLYTTSKELLPLLARGRLPLLKVGQIYQTI--DVNNLTVYNSVTFSGPLAEG 106

Query: 67  ELKVEAAASIKDGKRILFQFDKAAFSFKFLPFKF----------------PYPVPFRLLG 110
              V A   I+  KR+  +F++       L                      P+PF L G
Sbjct: 107 SFSVRAKFEIRSPKRVQIRFERGVLGTPQLLKGSLTPLQDTASNIRGISSQLPLPFPLSG 166

Query: 111 DEAKGWLDTTYLSPSGNLRISRGNKGTTFVL 141
           D AKGWL+TTYL    +LRISRG+ G+ FVL
Sbjct: 167 DRAKGWLETTYLDE--DLRISRGDGGSLFVL 195

This family identifies a conserved region found in a number of plastid lipid-associated proteins (PAPs), and in a number of putative fibrillin proteins. Length = 196

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	303
PF04755	198	PAP_fibrillin: PAP_fibrillin; InterPro: IPR006843	100.0
PF04755	198	PAP_fibrillin: PAP_fibrillin; InterPro: IPR006843	99.96

>PF04755 PAP_fibrillin: PAP_fibrillin; InterPro: IPR006843 This family identifies a conserved domain found in a number of plastid lipid-associated proteins (PAPs) that are thought to form together with other plastoglobulins a coat on the surface of the lipoprotein particle

Probab=100.00  E-value=1.1e-33  Score=250.68  Aligned_cols=150  Identities=24%  Similarity=0.362  Sum_probs=124.7

Q ss_pred             chhhhhhhcccCc-----------hHHHHHHHHHHhcCCCCccccc-cCccceEEEEEeeccCcchhhhhhc-CCCC---
Q 022035          146 EPRQTLLSAISTG-----------TQVEQAINEFISSNQSTAEEER-ELLEGEWQMLWSSQMETDSWIENAG-NGLM---  209 (303)
Q Consensus       146 ~~~~~ll~ai~~~-----------~~i~~~i~~Le~~np~~~p~~~-~lL~G~W~L~yts~~e~~~~l~~~~-~gl~---  209 (303)
                      ++|++||++++..           ++|+++|++||++||++.|.++ ++|+|+|+|+|||+.+..+.++... ++..   
T Consensus         2 ~~K~~Ll~~~~~~~rG~~~~~~~~~~i~~~v~~LE~~np~~~p~~s~~~L~G~W~Lvytt~~~~~~~l~~~~~~~~~~~~   81 (198)
T PF04755_consen    2 DLKQELLQAVAGTNRGLRASPEDREEIEELVEELEALNPTPDPADSLPLLDGRWELVYTTSPEIRSLLQRGRLPGVRVGR   81 (198)
T ss_pred             hHHHHHHHHHhccCCCccCCHHHHHHHHHHHHHHHHhCCCCCCcCCchhcCcEEEEEeecCCCccccccccccccccccc
Confidence            6899999999983           3799999999999999999876 9999999999999998877665322 2222   


Q ss_pred             CeeEEc-cCCcEEEEEEecC-C---eEEEEEEEEEEeCCcEEEEEEeecEEEe-------------------------Cc
Q 022035          210 GKQIVK-KNGQMKFEVDILL-G---FKFSMTGTYAKSSTNTYNVTMDDAAIIC-------------------------GG  259 (303)
Q Consensus       210 ~~Q~id-~~~~~~N~v~~~~-~---~~~~v~a~~e~~~~~rv~V~F~~~~l~~-------------------------~~  259 (303)
                      .||+|| +++++.|+|++.+ +   +.+.+.|++++.+++|+.|+|+++.+..                         .+
T Consensus        82 v~Q~id~~~~~~~N~v~~~~~~~~~~~~~v~a~~~~~~~~rv~v~f~~~~l~~~~~l~~~l~~~~~~~~~v~~~~~~~~~  161 (198)
T PF04755_consen   82 VFQTIDADNGRVENVVELSGFPLLEGSVSVRASLEVRSPRRVEVTFERASLKPPSLLKGVLGPLKDALNNVPRGISDELP  161 (198)
T ss_pred             eEEEEECCCceEEEEEEEeccCceEEEEEEEEEEEEccccEEEEEEEeeEEcccceeeccchhhhhhhhhcccccccccc
Confidence            499999 8899999999753 2   5678999999999999999999998843                         12


Q ss_pred             eeecCC-CCceeEEEEEEeeCceeEEeCCCCcEEEEE
Q 022035          260 FGYPIK-METKINLQLLYSDDKMRISRGYNNILFVHL  295 (303)
Q Consensus       260 ~~~p~~-~~~~gwlditYLDe~lRI~RG~~G~~FVl~  295 (303)
                      ++++++ ..++||||||||||+|||+||++|++|||.
T Consensus       162 ~~~~~~~~~~~g~l~~tYLDedlRI~Rg~~G~~fVl~  198 (198)
T PF04755_consen  162 VPLPLPGGSPKGWLDTTYLDEDLRISRGNKGSLFVLK  198 (198)
T ss_pred             cccccCCCCCceEEEEEEECCCeEEEEcCCCCEEEeC
Confidence            223333 357999999999999999999999999983

The coat may contain receptors for attachment to the thylakoid membrane as well as regulatory proteins that may function in the transfer of lipids to and from the thylakoid membranes.). This entry also represents a number of putative fibrillin proteins.; GO: 0005198 structural molecule activity, 0009507 chloroplast

>PF04755 PAP_fibrillin: PAP_fibrillin; InterPro: IPR006843 This family identifies a conserved domain found in a number of plastid lipid-associated proteins (PAPs) that are thought to form together with other plastoglobulins a coat on the surface of the lipoprotein particle

Probab=99.96  E-value=2e-28  Score=217.07  Aligned_cols=136  Identities=42%  Similarity=0.702  Sum_probs=111.4

Q ss_pred             ccCCCC----C-CCCceEEEEEeeCCCCCCCcccc-cccCceecceEEEEEeeCCCCeEEEEEEEec---cceEEEEEEE
Q 022035            3 EYLQTG----S-SLIEGRWQLMFTTRPGTASPIQR-TFVGVETFSVFQEISLRTNDPRVSNIVKFSE---AIGELKVEAA   73 (303)
Q Consensus         3 ~~nPt~----~-~lL~G~W~L~yTt~~~~~~~~~~-~~~g~~~~~i~Q~I~~~~~~g~v~N~v~f~~---~~g~l~V~a~   73 (303)
                      ++||++    + ++|+|+|+|+|||++++.++++. ..+++..++|||+||  .+++++.|+|+|..   ..|.+.+.|+
T Consensus        37 ~~np~~~p~~s~~~L~G~W~Lvytt~~~~~~~l~~~~~~~~~~~~v~Q~id--~~~~~~~N~v~~~~~~~~~~~~~v~a~  114 (198)
T PF04755_consen   37 ALNPTPDPADSLPLLDGRWELVYTTSPEIRSLLQRGRLPGVRVGRVFQTID--ADNGRVENVVELSGFPLLEGSVSVRAS  114 (198)
T ss_pred             HhCCCCCCcCCchhcCcEEEEEeecCCCccccccccccccccccceEEEEE--CCCceEEEEEEEeccCceEEEEEEEEE
Confidence            467766    3 78999999999999998877654 466788999999994  47789999999765   3578999999


Q ss_pred             EEEcCCCEEEEEEEEeEEeeccc-----------------ccccCCCcccccCCCCcceEEEEEEecCCCceEEEeCCCC
Q 022035           74 ASIKDGKRILFQFDKAAFSFKFL-----------------PFKFPYPVPFRLLGDEAKGWLDTTYLSPSGNLRISRGNKG  136 (303)
Q Consensus        74 ~~~~~~~rv~v~F~~~~v~~~~~-----------------~~~~P~p~~~~l~~~~~~Gwld~TYLD~~~dlRI~RG~~G  136 (303)
                      +++.+++|+.++|+++.+.++.+                 .....+|.++++.+..++||+||||||+  ||||+||++|
T Consensus       115 ~~~~~~~rv~v~f~~~~l~~~~~l~~~l~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~g~l~~tYLDe--dlRI~Rg~~G  192 (198)
T PF04755_consen  115 LEVRSPRRVEVTFERASLKPPSLLKGVLGPLKDALNNVPRGISDELPVPLPLPGGSPKGWLDTTYLDE--DLRISRGNKG  192 (198)
T ss_pred             EEEccccEEEEEEEeeEEcccceeeccchhhhhhhhhcccccccccccccccCCCCCceEEEEEEECC--CeEEEEcCCC
Confidence            99999999999999999865211                 1122345556666678999999999999  9999999999


Q ss_pred             cEEEEe
Q 022035          137 TTFVLQ  142 (303)
Q Consensus       137 ~vFVl~  142 (303)
                      ++|||.
T Consensus       193 ~~fVl~  198 (198)
T PF04755_consen  193 SLFVLK  198 (198)
T ss_pred             CEEEeC
Confidence            999984

The coat may contain receptors for attachment to the thylakoid membrane as well as regulatory proteins that may function in the transfer of lipids to and from the thylakoid membranes.). This entry also represents a number of putative fibrillin proteins.; GO: 0005198 structural molecule activity, 0009507 chloroplast

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Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00