Citrus Sinensis ID: 022111

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300--
Protein Sequence
MPAQKIETGHEDTVHDVAMDFYGKRLATASSDSSIKIIGLSNSASQHLATLKGHRGPVWQVAWAHPKFGSILASCSYDGQVIIWKEGNQNDWTQAHTFNDHKSSVNSIAWAPHELGLSLACGSSDGNISVFTATADGGWDTTRIDQAHPVGVTSVSWAPAMAPGALVGLGLLDPVQKLASCGCDNTVKVWKMYNGIWKMDCFPALQMHSDWVRSVAWAPNLGLPKSTIASASQDGTVVIWTCAKEGEQWEGRVLKDFKTPVWSVSWSLTGNLLAVADANNVTLWKEAVDGEWQQVSVVEPQT
Secondary Structure (PSIPRED)
cccccccccccccEEEEEEcccccEEEEEEccccEEEEEcccccEEEEEEEEcccccEEEEEEEccccccEEEEccccccEEEEEcccccccEEEEEcccccccEEEEEEcccccccEEEEEEccccEEEEEccccccEEEEEEcccccccEEEEEEcccccccccccccccccccEEEEEEccccEEEEEcccccEEEEEccccccccccEEEEEEcccccccccEEEEEEccccEEEEEcccccEEEcccccccccccEEEEEEcccccEEEEEccccEEEEEcccccEEEEEEEEcccc
Secondary Structure Prediction (SSPRO)
ccccEEEccccccEEEEEEcccccEEEEcccccEEEEEEcccccccEEEEEccccccEEEEEEcccccccEEEEcccccEEEEEEccccccccEEEEEccccccEEEEEEcccccccEEEEcccccEEEEEEccccccccEEEEEccccccEEEEEEccccccccEEEEEEcccccEEEEcccccEEEEEEcccccccccEEEEcccccccEEEEEEcccccccccEEEEcccccEEEEEEccccccEEEEEEEccccccEEEEEEcccccEEEEccccEEEEEEcccccccEEEEEccccc
Coil and Loop (DISEMBL)
mpaqkietghedtvhdVAMDFYGKrlatassdssikiiglsnsaSQHLATLkghrgpvwqvawahpkfgsILASCSYDGQVIIwkegnqndwtqahtfndhkssvnsiawaphelglslacgssdgnisvftatadggwdttridqahpvgvtsvswapamapgalvglglldpvqklascgcdntVKVWKMYNgiwkmdcfpalqmhsdwvrsvawapnlglpkstiasasqDGTVVIWTCAKEgeqwegrvlkdfktpvwsVSWSLTGNLLAVADANNVTLWKeavdgewqqvsvvepqt
Flexible Loop (DISEMBL)
mpaqkietghedtvhdVAMDFYGKRLATASSDSSIKIIGLSNSASQHLATLKGHRGPVWQVAWAHPKFGSILASCSYDGQVIIWKEGNQNDWTQAHTFNDHKSSVNSIAWAPHELGLSLACGSSDGNISVFTATADGGWDTTRIDQAHPVGVTSVSWAPAMAPGALVGLGLLDPVQKLASCGCDNTVKVWKMYNGIWKMDCFPALQMHSDWVRSVAWAPNLGLPKSTIASASQDGTVVIWTCAKEGEQWEGRVLKDFKTPVWSVSWSLTGNLLAVADANNVTLWKEAvdgewqqvsvvepqt
Low Complexity Region (SEG)
MPAQKIETGHEDTVHDVAMDFYGKRLATASSDSSIKIIGLSNSASQHLATLKGHRGPVWQVAWAHPKFGSILASCSYDGQVIIWKEGNQNDWTQAHTFNDHKSSVNSIAWAPHELGLSLACGSSDGNISVFTATADGGWDTTRIDQAHPVGVTSVSWAPAMAPGALVGLGLLDPVQKLASCGCDNTVKVWKMYNGIWKMDCFPALQMHSDWVRSVAWAPNLGLPKSTIASASQDGTVVIWTCAKEGEQWEGRVLKDFKTPVWSVSWSLTGNLLAVADANNVTLWKEAVDGEWQQVSVVEPQT
Disordered region (IsUnstruct)
**************HDVAMDFYGKRLAT*****SIKIIGLSNSASQHLATLKGHRGPVWQVAWAHPKFGSILASCSYDGQVIIWKEGNQNDWTQAHTFNDHKSSVNSIAWAPHELGLSLACGSSDGNISVFTATADGGWDTTRIDQAHPVGVTSVSWAPAMAPGALVGLGLLDPVQKLASCGCDNTVKVWKMYNGIWKMDCFPALQMHSDWVRSVAWAPNLGLPKSTIASASQDGTVVIWTCAKEGEQWEGRVLKDFKTPVWSVSWSLTGNLLAVADANNVTLWKEAVDGEWQQVS******
Disordered Region (DISOPRED)
*PAQKIETGHEDTVHDVAMDFYGKRLATASSDSSIKIIGLSNSASQHLATLKGHRGPVWQVAWAHPKFGSILASCSYDGQVIIWKEGNQNDWTQAHTFNDHKSSVNSIAWAPHELGLSLACGSSDGNISVFTATADGGWDTTRIDQAHPVGVTSVSWAPAMAPGALVGLGLLDPVQKLASCGCDNTVKVWKMYNGIWKMDCFPALQMHSDWVRSVAWAPNLGLPKSTIASASQDGTVVIWTCAKEGEQWEGRVLKDFKTPVWSVSWSLTGNLLAVADANNVTLWKEAVDGEWQQVSVVEP**
Disordered Region (DISEMBL)
*********HEDTVHDVAMDFYGKRLATASSDSSIKIIGLSNSASQHLATLKGHRGPVWQVAWAHPKFGSILASCSYDGQVIIWKEGNQNDWTQAHTFNDHKSSVNSIAWAPHELGLSLACGSSDGNISVFTATADGGWDTTRIDQAHPVGVTSVSWAPAMAPGALVGLGLLDPVQKLASCGCDNTVKVWKMYNGIWKMDCFPALQMHSDWVRSVAWAPNLGLPKSTIASASQDGTVVIWTCAKEGEQWEGRVLKDFKTPVWSVSWSLTGNLLAVADANNVTLWKEAVDGEWQQVSVVEPQT
Disordered Region (DISPRO)
*PAQKIETGHEDTVHDVAMDFYGKRLATASSDSSIKIIGLSNSASQHLATLKGHRGPVWQVAWAHPKFGSILASCSYDGQVIIWKEGNQNDWTQAHTFNDHKSSVNSIAWAPHELGLSLACGSSDGNISVFTATADGGWDTTRIDQAHPVGVTSVSWAPAMAPGALVGLGLLDPVQKLASCGCDNTVKVWKMYNGIWKMDCFPALQMHSDWVRSVAWAPNLGLPKSTIASASQDGTVVIWTCAKEGEQWEGRVLKDFKTPVWSVSWSLTGNLLAVADANNVTLWKEAVDGEWQQVSVV****
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MPAQKIETGHEDTVHDVAMDFYGKRLATASSDSSIKIIGLSNSASQHLATLKGHRGPVWQVAWAHPKFGSILASCSYDGQVIIWKEGNQNDWTQAHTFNDHKSSVNSIAWAPHELGLSLACGSSDGNISVFTATADGGWDTTRIDQAHPVGVTSVSWAPAMAPGALVGLGLLDPVQKLASCGCDNTVKVWKMYNGIWKMDCFPALQMHSDWVRSVAWAPNLGLPKSTIASASQDGTVVIWTCAKEGEQWEGRVLKDFKTPVWSVSWSLTGNLLAVADANNVTLWKEAVDGEWQQVSVVEPQT
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	302	2.2.26 [Sep-21-2011]
Q9D1M0	322	Protein SEC13 homolog OS=	yes	no	0.960	0.900	0.541	7e-86
Q5XFW8	322	Protein SEC13 homolog OS=	yes	no	0.960	0.900	0.541	8e-86
Q3ZCC9	322	Protein SEC13 homolog OS=	yes	no	0.960	0.900	0.541	8e-85
P55735	322	Protein SEC13 homolog OS=	yes	no	0.960	0.900	0.535	1e-84
Q54DS8	301	Protein transport protein	yes	no	0.976	0.980	0.508	1e-80
Q4PCB8	364	Protein transport protein	N/A	no	0.976	0.810	0.468	1e-75
Q5B563	309	Protein transport protein	yes	no	0.943	0.922	0.480	5e-70
Q0CHM0	309	Protein transport protein	N/A	no	0.953	0.932	0.481	2e-69
A2QHM1	308	Protein transport protein	yes	no	0.976	0.957	0.482	3e-69
P53024	289	Protein transport protein	yes	no	0.933	0.975	0.478	5e-69

>sp|Q9D1M0|SEC13_MOUSE Protein SEC13 homolog OS=Mus musculus GN=Sec13 PE=2 SV=3

 Score =  317 bits (812), Expect = 7e-86,   Method: Compositional matrix adjust.
 Identities = 162/299 (54%), Positives = 207/299 (69%), Gaps = 9/299 (3%)

Query: 6   IETGHEDTVHDVAMDFYGKRLATASSDSSIKIIGLSNSASQHLATLKGHRGPVWQVAWAH 65
           ++T HED +HD  MD+YG RLAT SSD S+KI  + N     +A L+GH GPVWQVAWAH
Sbjct: 8   VDTSHEDMIHDAQMDYYGTRLATCSSDRSVKIFDVRNGGQILIADLRGHEGPVWQVAWAH 67

Query: 66  PKFGSILASCSYDGQVIIWKEGNQNDWTQAHTFNDHKSSVNSIAWAPHELGLSLACGSSD 125
           P +G+ILASCSYD +VIIWKE N   W + H  + H SSVNS+ WAPH+ GL LACGSSD
Sbjct: 68  PMYGNILASCSYDRKVIIWKEEN-GTWEKTHEHSGHDSSVNSVCWAPHDYGLILACGSSD 126

Query: 126 GNISVFTATADGGWDTTRIDQAHPVGVTSVSWAPAMAPGALVGL---GLLDPVQKLASCG 182
           G IS+ T T +G W+  +I+ AH +G  +VSWAPA+ PG+L+        + ++K AS G
Sbjct: 127 GAISLLTYTGEGQWEVKKINNAHTIGCNAVSWAPAVVPGSLIDQPSGQKPNYIKKFASGG 186

Query: 183 CDNTVKVWK-MYNGIWKMDCFPALQMHSDWVRSVAWAPNLGLPKSTIASASQDGTVVIWT 241
           CDN +K+W+   +G WK +    L+ HSDWVR VAWAP++GLP STIAS SQDG V IWT
Sbjct: 187 CDNLIKLWREEEDGQWKEE--QKLEAHSDWVRDVAWAPSIGLPTSTIASCSQDGRVFIWT 244

Query: 242 CAK-EGEQWEGRVLKDFKTPVWSVSWSLTGNLLAVADANN-VTLWKEAVDGEWQQVSVV 298
           C    G  W  ++L  F   VW VSWS+T N+LAV+  +N VTLWKE+VDG+W  +S V
Sbjct: 245 CDDASGNMWSPKLLHKFNDVVWHVSWSITANILAVSGGDNKVTLWKESVDGQWVCISDV 303

Functions as a component of the nuclear pore complex (NPC) and the COPII coat. At the endoplasmic reticulum, SEC13 is involved in the biogenesis of COPII-coated vesicles.
Mus musculus (taxid: 10090)

>sp|Q5XFW8|SEC13_RAT Protein SEC13 homolog OS=Rattus norvegicus GN=Sec13 PE=1 SV=1

 Score =  317 bits (812), Expect = 8e-86,   Method: Compositional matrix adjust.
 Identities = 162/299 (54%), Positives = 207/299 (69%), Gaps = 9/299 (3%)

Query: 6   IETGHEDTVHDVAMDFYGKRLATASSDSSIKIIGLSNSASQHLATLKGHRGPVWQVAWAH 65
           ++T HED +HD  MD+YG RLAT SSD S+KI  + N     +A L+GH GPVWQVAWAH
Sbjct: 8   VDTSHEDMIHDAQMDYYGTRLATCSSDRSVKIFDVRNGGQILIADLRGHEGPVWQVAWAH 67

Query: 66  PKFGSILASCSYDGQVIIWKEGNQNDWTQAHTFNDHKSSVNSIAWAPHELGLSLACGSSD 125
           P +G+ILASCSYD +VIIWKE N   W + H  + H SSVNS+ WAPH+ GL LACGSSD
Sbjct: 68  PMYGNILASCSYDRKVIIWKEEN-GTWEKTHEHSGHDSSVNSVCWAPHDYGLILACGSSD 126

Query: 126 GNISVFTATADGGWDTTRIDQAHPVGVTSVSWAPAMAPGALVGL---GLLDPVQKLASCG 182
           G IS+ T T +G W+  +I+ AH +G  +VSWAPA+ PG+L+        + ++K AS G
Sbjct: 127 GAISLLTYTGEGQWEVKKINNAHTIGCNAVSWAPAVVPGSLIDQPSGQKPNYIKKFASGG 186

Query: 183 CDNTVKVWK-MYNGIWKMDCFPALQMHSDWVRSVAWAPNLGLPKSTIASASQDGTVVIWT 241
           CDN +K+W+   +G WK +    L+ HSDWVR VAWAP++GLP STIAS SQDG V IWT
Sbjct: 187 CDNLIKLWREEEDGQWKEE--QKLEAHSDWVRDVAWAPSIGLPTSTIASCSQDGRVFIWT 244

Query: 242 CAK-EGEQWEGRVLKDFKTPVWSVSWSLTGNLLAVADANN-VTLWKEAVDGEWQQVSVV 298
           C    G  W  ++L  F   VW VSWS+T N+LAV+  +N VTLWKE+VDG+W  +S V
Sbjct: 245 CDDASGNMWSPKLLHKFNDVVWHVSWSITANILAVSGGDNKVTLWKESVDGQWVCISDV 303

Functions as a component of the nuclear pore complex (NPC) and the COPII coat. At the endoplasmic reticulum, SEC13 is involved in the biogenesis of COPII-coated vesicles.

Rattus norvegicus (taxid: 10116)

>sp|Q3ZCC9|SEC13_BOVIN Protein SEC13 homolog OS=Bos taurus GN=SEC13 PE=2 SV=1

 Score =  313 bits (803), Expect = 8e-85,   Method: Compositional matrix adjust.
 Identities = 162/299 (54%), Positives = 205/299 (68%), Gaps = 9/299 (3%)

Query: 6   IETGHEDTVHDVAMDFYGKRLATASSDSSIKIIGLSNSASQHLATLKGHRGPVWQVAWAH 65
           ++T HED +HD  MD+YG RLAT SSD S+KI  + N     +A L+GH GPVWQVAWAH
Sbjct: 8   VDTSHEDMIHDAQMDYYGTRLATCSSDRSVKIFDVRNGGQILVADLRGHEGPVWQVAWAH 67

Query: 66  PKFGSILASCSYDGQVIIWKEGNQNDWTQAHTFNDHKSSVNSIAWAPHELGLSLACGSSD 125
           P +G+ILASCSYD +VIIWKE N   W + H    H SSVNS+ WAPH+ GL LACGSSD
Sbjct: 68  PMYGNILASCSYDRKVIIWKEEN-GTWEKTHEHTGHDSSVNSVCWAPHDYGLILACGSSD 126

Query: 126 GNISVFTATADGGWDTTRIDQAHPVGVTSVSWAPAMAPGALVGL---GLLDPVQKLASCG 182
           G IS+ T T  G W+  +I+ AH +G  +VSWAPA+ PG+L+        + ++K AS G
Sbjct: 127 GAISLLTYTGLGQWEVKKINNAHTIGCNAVSWAPAVVPGSLIDQPSGQKPNYIKKFASGG 186

Query: 183 CDNTVKVWK-MYNGIWKMDCFPALQMHSDWVRSVAWAPNLGLPKSTIASASQDGTVVIWT 241
           CDN +K+WK   +G WK +    L+ HSDWVR VAWAP++GLP STIAS SQDG V +WT
Sbjct: 187 CDNLIKLWKEEEDGQWKEE--QKLEAHSDWVRDVAWAPSIGLPTSTIASCSQDGRVFVWT 244

Query: 242 CAK-EGEQWEGRVLKDFKTPVWSVSWSLTGNLLAVADANN-VTLWKEAVDGEWQQVSVV 298
           C    G  W  ++L  F   VW VSWS+T N+LAV+  +N VTLWKE+VDG+W  +S V
Sbjct: 245 CDDASGNTWSPKLLHKFNDVVWHVSWSITANILAVSGGDNKVTLWKESVDGQWVCISDV 303

Functions as a component of the nuclear pore complex (NPC) and the COPII coat. At the endoplasmic reticulum, SEC13 is involved in the biogenesis of COPII-coated vesicles.

Bos taurus (taxid: 9913)

>sp|P55735|SEC13_HUMAN Protein SEC13 homolog OS=Homo sapiens GN=SEC13 PE=1 SV=3

 Score =  313 bits (802), Expect = 1e-84,   Method: Compositional matrix adjust.
 Identities = 160/299 (53%), Positives = 206/299 (68%), Gaps = 9/299 (3%)

Query: 6   IETGHEDTVHDVAMDFYGKRLATASSDSSIKIIGLSNSASQHLATLKGHRGPVWQVAWAH 65
           ++T HED +HD  MD+YG RLAT SSD S+KI  + N     +A L+GH GPVWQVAWAH
Sbjct: 8   VDTSHEDMIHDAQMDYYGTRLATCSSDRSVKIFDVRNGGQILIADLRGHEGPVWQVAWAH 67

Query: 66  PKFGSILASCSYDGQVIIWKEGNQNDWTQAHTFNDHKSSVNSIAWAPHELGLSLACGSSD 125
           P +G+ILASCSYD +VIIW+E N   W ++H    H SSVNS+ WAPH+ GL LACGSSD
Sbjct: 68  PMYGNILASCSYDRKVIIWREEN-GTWEKSHEHAGHDSSVNSVCWAPHDYGLILACGSSD 126

Query: 126 GNISVFTATADGGWDTTRIDQAHPVGVTSVSWAPAMAPGALVGL---GLLDPVQKLASCG 182
           G IS+ T T +G W+  +I+ AH +G  +VSWAPA+ PG+L+        + +++ AS G
Sbjct: 127 GAISLLTYTGEGQWEVKKINNAHTIGCNAVSWAPAVVPGSLIDHPSGQKPNYIKRFASGG 186

Query: 183 CDNTVKVWK-MYNGIWKMDCFPALQMHSDWVRSVAWAPNLGLPKSTIASASQDGTVVIWT 241
           CDN +K+WK   +G WK +    L+ HSDWVR VAWAP++GLP STIAS SQDG V IWT
Sbjct: 187 CDNLIKLWKEEEDGQWKEE--QKLEAHSDWVRDVAWAPSIGLPTSTIASCSQDGRVFIWT 244

Query: 242 CAK-EGEQWEGRVLKDFKTPVWSVSWSLTGNLLAVADANN-VTLWKEAVDGEWQQVSVV 298
           C       W  ++L  F   VW VSWS+T N+LAV+  +N VTLWKE+VDG+W  +S V
Sbjct: 245 CDDASSNTWSPKLLHKFNDVVWHVSWSITANILAVSGGDNKVTLWKESVDGQWVCISDV 303

Functions as a component of the nuclear pore complex (NPC) and the COPII coat. At the endoplasmic reticulum, SEC13 is involved in the biogenesis of COPII-coated vesicles.

Homo sapiens (taxid: 9606)

>sp|Q54DS8|SEC13_DICDI Protein transport protein SEC13 OS=Dictyostelium discoideum GN=sec13 PE=3 SV=1

 Score =  300 bits (767), Expect = 1e-80,   Method: Compositional matrix adjust.
 Identities = 154/303 (50%), Positives = 199/303 (65%), Gaps = 8/303 (2%)

Query: 1   MPAQKIETGHEDTVHDVAMDFYGKRLATASSDSSIKIIGLSNSASQHLATLKGHRGPVWQ 60
           M  Q +++GHED VHD   D+YGK LAT SSD  IKI  +     QHL  L+GH GPVWQ
Sbjct: 1   MATQNVDSGHEDMVHDAQFDYYGKFLATCSSDKMIKIFDVGGENPQHLVDLRGHEGPVWQ 60

Query: 61  VAWAHPKFGSILASCSYDGQVIIWKEGNQNDWTQAHTFNDHKSSVNSIAWAPHELGLSLA 120
           VAWAHPKFG ILAS SYD +VI+WKE   N W+  H +  H+ SVNSI+WAPHE GLSLA
Sbjct: 61  VAWAHPKFGKILASASYDRKVIVWKEVGNNSWSIIHQYAGHELSVNSISWAPHEFGLSLA 120

Query: 121 CGSSDGNISVFTATADGGWDTTRIDQAHPVGVTSVSWAPAMAPGALVGLG---LLDPVQK 177
           C SSDG++++     +  W+  +  Q   +GV SVSW+PA  P +LV      +  P+++
Sbjct: 121 CASSDGSVTIHNYN-NNVWEAPQKIQVSQIGVNSVSWSPAAIPTSLVNSANTIIPAPIKR 179

Query: 178 LASCGCDNTVKVWKMYNGIWKMDCFPALQMHSDWVRSVAWAPNLGLPKSTIASASQDGTV 237
           + +  CDN +K++K     W +D    L+ H DWVR VAWAPN+GLP S IAS SQD +V
Sbjct: 180 IVTGSCDNLIKIFKNVEDKWILD--KQLEDHKDWVRDVAWAPNIGLPYSKIASCSQDRSV 237

Query: 238 VIWTCAKEGEQWEGRVLKDFKTPVWSVSWSLTGNLLAVADANN-VTLWKEAVDGEWQQVS 296
           ++WT  + G  W G+ L  F   VW VSWS+ GN+LAV+  +N VTLWKE VD EW+ +S
Sbjct: 238 IVWTQDENG-VWSGKPLPKFDDIVWRVSWSVIGNILAVSCGDNQVTLWKEGVDSEWKLIS 296

Query: 297 VVE 299
            VE
Sbjct: 297 HVE 299

Component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). The coat has two main functions, the physical deformation of the endoplasmic reticulum membrane into vesicles and the selection of cargo molecules. It also functions as a component of the nuclear pore complex (NPC). NPC components, collectively referred to as nucleoporins (NUPs), can play the role of both NPC structural components and of docking or interaction partners for transiently associated nuclear transport factors. SEC13 is required for efficient mRNA export from the nucleus to the cytoplasm and for correct nuclear pore biogenesis and distribution.

Dictyostelium discoideum (taxid: 44689)

>sp|Q4PCB8|SEC13_USTMA Protein transport protein SEC13 OS=Ustilago maydis (strain 521 / FGSC 9021) GN=SEC13 PE=3 SV=1

 Score =  283 bits (724), Expect = 1e-75,   Method: Compositional matrix adjust.
 Identities = 162/346 (46%), Positives = 205/346 (59%), Gaps = 51/346 (14%)

Query: 4   QKIETGHEDTVHDVAMDFYGKRLATASSDSSIKIIGLSN-SASQHLATLKGHRGPVWQVA 62
           + IET HED VHD  +DFYGKRLAT SSD ++K+  + N + S    TL GH+GPVWQVA
Sbjct: 19  KNIETQHEDMVHDAQLDFYGKRLATCSSDRTVKVFDIVNGTPSTTAETLHGHQGPVWQVA 78

Query: 63  WAHPKFGSILASCSYDGQVIIWKE-------------GNQN----------DWTQAHTFN 99
           WAHP FG ILASCSYDG+V+IWK+             G+Q+           WT+     
Sbjct: 79  WAHPTFGDILASCSYDGKVVIWKDNGAGASIGASAPYGSQSAYGAPTSSAGGWTKIKEHT 138

Query: 100 DHKSSVNSIAWAPHELGLSLACGSSDGNISVFTATADGGWDTTRIDQAHPVGVTSVSWAP 159
            H +SVNSI+WAPHELG  LAC SSDGN+SV T   DG W    +  AHPVG  +VSWAP
Sbjct: 139 LHTASVNSISWAPHELGSILACASSDGNVSVLTFNNDGTWAVDLV-AAHPVGCNAVSWAP 197

Query: 160 AMAPGALVGL------------GLLDPVQKLASCGCDNTVKVWKMYNGIWKMDCFPALQM 207
           A+ PG+L+              G    V++ AS GCDNTVK+W+      +     ALQ 
Sbjct: 198 AVVPGSLISAQSVGANAGAASNGEAKLVKRFASAGCDNTVKIWEFSQEANRFVEVEALQG 257

Query: 208 HSDWVRSVAWAPNLGLPKSTIASASQDGTVVIWTCAKEGEQWEGRVL------------- 254
           HSDWVR VA+APN+GLP+S +A+ASQD TV+IWT       W    L             
Sbjct: 258 HSDWVRDVAFAPNVGLPRSYLATASQDRTVLIWTQDSPTAAWSKTALNPISASAAAGAGS 317

Query: 255 KDFKTPVWSVSWSLTGNLLAVADAN-NVTLWKEAVDGEWQQVSVVE 299
             F   VW VSWS++GN+LAV+  +  +TLWKE + G W+ VS ++
Sbjct: 318 NKFPDTVWRVSWSVSGNVLAVSCGDGKITLWKENLKGAWECVSEMD 363

Component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). The coat has two main functions, the physical deformation of the endoplasmic reticulum membrane into vesicles and the selection of cargo molecules. It also functions as a component of the nuclear pore complex (NPC). NPC components, collectively referred to as nucleoporins (NUPs), can play the role of both NPC structural components and of docking or interaction partners for transiently associated nuclear transport factors. SEC13 is required for efficient mRNA export from the nucleus to the cytoplasm and for correct nuclear pore biogenesis and distribution.

Ustilago maydis (strain 521 / FGSC 9021) (taxid: 237631)

>sp|Q5B563|SEC13_EMENI Protein transport protein sec13 OS=Emericella nidulans (strain FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139) GN=sec13 PE=3 SV=1

 Score =  264 bits (675), Expect = 5e-70,   Method: Compositional matrix adjust.
 Identities = 147/306 (48%), Positives = 199/306 (65%), Gaps = 21/306 (6%)

Query: 8   TGHEDTVHDVAMDFYGKRLATASSDSSIKIIGLSNSASQHLATLKGHRGPVWQVAWAHPK 67
           +GH+D +HD  +D+YG+RLAT SSD +IKI  +     + + TLKGH GPVW V WAHPK
Sbjct: 10  SGHDDMIHDAGLDYYGRRLATCSSDKTIKIFEIEGDTHKLVETLKGHEGPVWCVEWAHPK 69

Query: 68  FGSILASCSYDGQVIIWKEGNQND--------WTQAHTFNDHKSSVNSIAWAPHELGLSL 119
           FG+ILAS SYDG+V+IW+E +Q+         WT+   F+ H +SVN I+WAPHE G  L
Sbjct: 70  FGTILASSSYDGKVLIWREQHQSSTAPIGSGAWTKVFDFSLHTASVNMISWAPHETGCLL 129

Query: 120 ACGSSDGNISVFTATADGGWDTTRIDQAHPVGVTSVSWAPAMAPGALV----GLGLLDPV 175
           AC SSDG++SV     D  W T +I  AH +GV S+SWAPA +PG+LV    G+G     
Sbjct: 130 ACASSDGHVSVLEFR-DNSW-THQIFHAHGMGVNSISWAPAASPGSLVSSNPGIG---QQ 184

Query: 176 QKLASCGCDNTVKVWKMYNGIWKMDCFPALQMHSDWVRSVAWAPNLGLPKSTIASASQDG 235
           ++  + G DN +K+W         +    L+ HSDWVR VAW+P++ L KS IASASQD 
Sbjct: 185 RRFVTGGSDNLLKIWDYNPETKTYNATQTLEGHSDWVRDVAWSPSI-LSKSYIASASQDK 243

Query: 236 TVVIWTC-AKEGEQWEGRVLKDFKTPVWSVSWSLTGNLLAVADANN-VTLWKEAVDGEWQ 293
           TV +WT  A    QW  +VL +F   +W VSWS +GN+LAV+  +N V+LWKE + G+W+
Sbjct: 244 TVRVWTADASNPGQWTSQVL-EFDNVLWRVSWSPSGNILAVSGGDNKVSLWKENLRGQWE 302

Query: 294 QVSVVE 299
           +V  +E
Sbjct: 303 KVKDIE 308

Component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). The coat has two main functions, the physical deformation of the endoplasmic reticulum membrane into vesicles and the selection of cargo molecules. It also functions as a component of the nuclear pore complex (NPC). NPC components, collectively referred to as nucleoporins (NUPs), can play the role of both NPC structural components and of docking or interaction partners for transiently associated nuclear transport factors. Sec13 is required for efficient mRNA export from the nucleus to the cytoplasm and for correct nuclear pore biogenesis and distribution.

Emericella nidulans (strain FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139) (taxid: 227321)

>sp|Q0CHM0|SEC13_ASPTN Protein transport protein sec13 OS=Aspergillus terreus (strain NIH 2624 / FGSC A1156) GN=sec13 PE=3 SV=1

 Score =  263 bits (671), Expect = 2e-69,   Method: Compositional matrix adjust.
 Identities = 146/303 (48%), Positives = 196/303 (64%), Gaps = 15/303 (4%)

Query: 8   TGHEDTVHDVAMDFYGKRLATASSDSSIKIIGLSNSASQHLATLKGHRGPVWQVAWAHPK 67
           +GHED +HD  +D+YG+RLAT SSD +IK+  +   A + + TLKGH G VW VAWAHPK
Sbjct: 10  SGHEDMIHDAGLDYYGRRLATCSSDKTIKVFEIEGEAHRLVETLKGHEGAVWCVAWAHPK 69

Query: 68  FGSILASCSYDGQVIIWKEGNQND--------WTQAHTFNDHKSSVNSIAWAPHELGLSL 119
           FG+ILAS SYDG+V+IW+E +QN         WT+   F+ H +SVN ++WAPHE G  L
Sbjct: 70  FGTILASSSYDGKVLIWREQHQNTTSPAAGSAWTKVFDFSLHTASVNMVSWAPHESGCLL 129

Query: 120 ACGSSDGNISVFTATADGGWDTTRIDQAHPVGVTSVSWAPAMAPGALVGLGLLDPVQ-KL 178
            C SSDG++SV     D  W T +I  AH +GV S+SWAPA APG+L+        Q + 
Sbjct: 130 GCASSDGHVSVLEFQ-DNSW-THQIFHAHGMGVNSISWAPAAAPGSLISANPGPGQQRRF 187

Query: 179 ASCGCDNTVKVWKMYNGIWKMDCFPALQMHSDWVRSVAWAPNLGLPKSTIASASQDGTVV 238
            + G DN +K+W         +    L+ HSDWVR VAW+P++ L KS IASASQD TV 
Sbjct: 188 VTGGSDNLLKIWDYNPETKTYNLSQTLEGHSDWVRDVAWSPSI-LSKSYIASASQDKTVR 246

Query: 239 IWTC-AKEGEQWEGRVLKDFKTPVWSVSWSLTGNLLAVADANN-VTLWKEAVDGEWQQVS 296
           IWT  A    QW  + L +F + +W VSWS +GN+LAV+  +N V+LWKE + G+W++V 
Sbjct: 247 IWTSDASNPGQWTSQQL-EFDSVLWRVSWSPSGNILAVSGGDNKVSLWKENLKGQWEKVK 305

Query: 297 VVE 299
            +E
Sbjct: 306 DIE 308

Component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). The coat has two main functions, the physical deformation of the endoplasmic reticulum membrane into vesicles and the selection of cargo molecules. It also functions as a component of the nuclear pore complex (NPC). NPC components, collectively referred to as nucleoporins (NUPs), can play the role of both NPC structural components and of docking or interaction partners for transiently associated nuclear transport factors. Sec13 is required for efficient mRNA export from the nucleus to the cytoplasm and for correct nuclear pore biogenesis and distribution.

Aspergillus terreus (strain NIH 2624 / FGSC A1156) (taxid: 341663)

>sp|A2QHM1|SEC13_ASPNC Protein transport protein sec13 OS=Aspergillus niger (strain CBS 513.88 / FGSC A1513) GN=sec13 PE=3 SV=1

 Score =  262 bits (669), Expect = 3e-69,   Method: Compositional matrix adjust.
 Identities = 150/311 (48%), Positives = 200/311 (64%), Gaps = 16/311 (5%)

Query: 1   MPAQKI-ETGHEDTVHDVAMDFYGKRLATASSDSSIKIIGLSNSASQHLATLKGHRGPVW 59
           M AQ I  +GH++ +HD  +D+YG+RLAT SSD +IKI  +     + + TLKGH G VW
Sbjct: 1   MAAQVISNSGHDEMIHDAGLDYYGRRLATCSSDKTIKIFEIEGETHRLIETLKGHEGAVW 60

Query: 60  QVAWAHPKFGSILASCSYDGQVIIWKEGNQN--------DWTQAHTFNDHKSSVNSIAWA 111
            VAWAHPKFG+ILAS SYDG+V+IW+E +QN         WT+   F+ H +SVN ++WA
Sbjct: 61  CVAWAHPKFGTILASSSYDGKVLIWREQHQNATSPVAGGAWTKVFDFSLHTASVNMVSWA 120

Query: 112 PHELGLSLACGSSDGNISVFTATADGGWDTTRIDQAHPVGVTSVSWAPAMAPGALVGLGL 171
           PHE G  LAC SSDG++SV     D  W T +I  AH +GV S+SWAPA APG+L+    
Sbjct: 121 PHESGCLLACASSDGHVSVLEFR-DNSW-THQIFHAHGMGVNSISWAPAAAPGSLISSNP 178

Query: 172 LDPVQ-KLASCGCDNTVKVWKMYNGIWKMDCFPALQMHSDWVRSVAWAPNLGLPKSTIAS 230
               Q +  + G DN +K+W         +    L+ HSDWVR VAW+P++ L KS IAS
Sbjct: 179 GPGQQRRFVTGGSDNLLKIWDYNPETKTYNNTQTLEGHSDWVRDVAWSPSV-LSKSYIAS 237

Query: 231 ASQDGTVVIWTC-AKEGEQWEGRVLKDFKTPVWSVSWSLTGNLLAVADANN-VTLWKEAV 288
           ASQD TV IWT  A    QW  + L +F T +W VSWS +GN+LAV+  +N V+LWKE +
Sbjct: 238 ASQDKTVRIWTSDASNPGQWTSQQL-EFDTVLWRVSWSPSGNILAVSGGDNKVSLWKENL 296

Query: 289 DGEWQQVSVVE 299
            G+W++V  +E
Sbjct: 297 KGQWEKVKDIE 307

Component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). The coat has two main functions, the physical deformation of the endoplasmic reticulum membrane into vesicles and the selection of cargo molecules. It also functions as a component of the nuclear pore complex (NPC). NPC components, collectively referred to as nucleoporins (NUPs), can play the role of both NPC structural components and of docking or interaction partners for transiently associated nuclear transport factors. Sec13 is required for efficient mRNA export from the nucleus to the cytoplasm and for correct nuclear pore biogenesis and distribution.

Aspergillus niger (strain CBS 513.88 / FGSC A1513) (taxid: 425011)

>sp|P53024|SEC13_PICPG Protein transport protein SEC13 OS=Komagataella pastoris (strain GS115 / ATCC 20864) GN=SEC13 PE=3 SV=3

 Score =  261 bits (667), Expect = 5e-69,   Method: Compositional matrix adjust.
 Identities = 142/297 (47%), Positives = 184/297 (61%), Gaps = 15/297 (5%)

Query: 6   IETGHEDTVHDVAMDFYGKRLATASSDSSIKIIGLSNSASQHLATLKGHRGPVWQVAWAH 65
           I   H+D +HD  +D+YG+RLAT SSD +IKI  +     + + TL GH GPVWQVAWAH
Sbjct: 4   IGNAHDDLIHDAVLDYYGRRLATCSSDKTIKIFEIDGENQRLVETLIGHEGPVWQVAWAH 63

Query: 66  PKFGSILASCSYDGQVIIWKEGNQNDWTQAHTFNDHKSSVNSIAWAPHELGLSLACGSSD 125
           PKFG ILASCSYDG+V+IWKE N   W +    + H++SVNS++WAPHE G  L C SSD
Sbjct: 64  PKFGVILASCSYDGKVLIWKEDN-GVWNKVAEHSVHQASVNSVSWAPHEYGPVLLCASSD 122

Query: 126 GNISVFTATADGGWDTTRIDQAHPVGVTSVSWAPAMAPGALVGLGLLDPVQKLASCGCDN 185
           G IS+     DGG     + Q H +GV + SWAP   P         D  ++  S GCDN
Sbjct: 123 GKISI-VEFKDGGALEPIVIQGHAIGVNAASWAPISLP---------DNTRRFVSGGCDN 172

Query: 186 TVKVWKMYNGIWKMDCFPALQMHSDWVRSVAWAPNLGLPKSTIASASQDGTVVIWTCAKE 245
            VK+W+  +         A Q HSDWVR VAW+P+  L KS IA+ASQD TV+IWT   +
Sbjct: 173 LVKIWRYDDAAKTFIEEEAFQGHSDWVRDVAWSPSR-LSKSYIATASQDRTVLIWTKDGK 231

Query: 246 GEQWEGRVLKDFKTP--VWSVSWSLTGNLLAVADANN-VTLWKEAVDGEWQQVSVVE 299
             +WE + L   K P   W  SWSL+GN+LA++  +N VTLWKE + G+W+    V+
Sbjct: 232 SNKWEKQPLTKEKFPDVCWRASWSLSGNVLAISGGDNKVTLWKENIQGKWESAGEVD 288

Component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). The coat has two main functions, the physical deformation of the endoplasmic reticulum membrane into vesicles and the selection of cargo molecules. It also functions as a component of the nuclear pore complex (NPC). NPC components, collectively referred to as nucleoporins (NUPs), can play the role of both NPC structural components and of docking or interaction partners for transiently associated nuclear transport factors. SEC13 is required for efficient mRNA export from the nucleus to the cytoplasm and for correct nuclear pore biogenesis and distribution.

Pichia pastoris (strain GS115 / ATCC 20864) (taxid: 644223)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	302
225452646	301	PREDICTED: protein SEC13 homolog [Vitis	0.993	0.996	0.877	1e-153
147843426	312	hypothetical protein VITISV_009154 [Viti	0.993	0.961	0.873	1e-152
147801593	313	hypothetical protein VITISV_000787 [Viti	0.993	0.958	0.877	1e-152
359494316	305	PREDICTED: protein SEC13 homolog [Vitis	0.993	0.983	0.870	1e-151
356567320	301	PREDICTED: protein SEC13 homolog [Glycin	0.993	0.996	0.857	1e-151
225464146	301	PREDICTED: protein SEC13 homolog [Vitis	0.993	0.996	0.873	1e-151
356527095	301	PREDICTED: protein SEC13 homolog [Glycin	0.993	0.996	0.857	1e-151
356527081	301	PREDICTED: protein SEC13 homolog [Glycin	0.993	0.996	0.857	1e-150
147856741	301	hypothetical protein VITISV_021485 [Viti	0.993	0.996	0.867	1e-150
255639691	301	unknown [Glycine max]	0.993	0.996	0.853	1e-150

>gi|225452646|ref|XP_002281856.1| PREDICTED: protein SEC13 homolog [Vitis vinifera] gi|147809687|emb|CAN73348.1| hypothetical protein VITISV_040760 [Vitis vinifera]

 Score =  545 bits (1405), Expect = e-153,   Method: Compositional matrix adjust.
 Identities = 264/301 (87%), Positives = 285/301 (94%), Gaps = 1/301 (0%)

Query: 1   MPAQKIETGHEDTVHDVAMDFYGKRLATASSDSSIKIIGLSNSASQHLATLKGHRGPVWQ 60
           MP+QKIETGH+DTVHDVAMD+YGKR+ATASSD++IKIIG+SN+ASQHLATL GH+GPVWQ
Sbjct: 1   MPSQKIETGHQDTVHDVAMDYYGKRVATASSDTTIKIIGVSNNASQHLATLIGHQGPVWQ 60

Query: 61  VAWAHPKFGSILASCSYDGQVIIWKEGNQNDWTQAHTFNDHKSSVNSIAWAPHELGLSLA 120
           V WAHPKFGSILASCSYDG+VIIWKEGNQN+WTQAH F+DHKSSVNSIAWAPHELGL LA
Sbjct: 61  VVWAHPKFGSILASCSYDGRVIIWKEGNQNEWTQAHVFSDHKSSVNSIAWAPHELGLCLA 120

Query: 121 CGSSDGNISVFTATADGGWDTTRIDQAHPVGVTSVSWAPAMAPGALVGLGLLDPVQKLAS 180
           CGSSDGNISVFTA +DG WDTT+IDQAHPVGVTSVSWAP+MAPGALVG GLLDPVQKL S
Sbjct: 121 CGSSDGNISVFTARSDGTWDTTKIDQAHPVGVTSVSWAPSMAPGALVGSGLLDPVQKLVS 180

Query: 181 CGCDNTVKVWKMYNGIWKMDCFPALQMHSDWVRSVAWAPNLGLPKSTIASASQDGTVVIW 240
            GCDNTVKVWK+YNG WKMDCFPALQMH+DWVR VAWAPNLGLPKSTIASASQDGTVVIW
Sbjct: 181 GGCDNTVKVWKLYNGNWKMDCFPALQMHTDWVRDVAWAPNLGLPKSTIASASQDGTVVIW 240

Query: 241 TCAKEGEQWEGRVLKDFKTPVWSVSWSLTGNLLAVADA-NNVTLWKEAVDGEWQQVSVVE 299
           T AKEG+QWEG+VLKDFKTPVW VSWSLTGNLLAVAD  NNVTLWKEAVDGEWQQV+ V+
Sbjct: 241 TVAKEGDQWEGKVLKDFKTPVWRVSWSLTGNLLAVADGNNNVTLWKEAVDGEWQQVTTVD 300

Query: 300 P 300
           P
Sbjct: 301 P 301

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147843426|emb|CAN79974.1| hypothetical protein VITISV_009154 [Vitis vinifera]

 Score =  544 bits (1401), Expect = e-152,   Method: Compositional matrix adjust.
 Identities = 263/301 (87%), Positives = 286/301 (95%), Gaps = 1/301 (0%)

Query: 1   MPAQKIETGHEDTVHDVAMDFYGKRLATASSDSSIKIIGLSNSASQHLATLKGHRGPVWQ 60
           MP+QKI+TGH+DTVHDVAMD+YGKR+ATASSDS+IKIIG+SN+ASQHL+TL GH+GPVWQ
Sbjct: 1   MPSQKIKTGHQDTVHDVAMDYYGKRVATASSDSTIKIIGVSNNASQHLSTLTGHQGPVWQ 60

Query: 61  VAWAHPKFGSILASCSYDGQVIIWKEGNQNDWTQAHTFNDHKSSVNSIAWAPHELGLSLA 120
           VAWAHPKFGSILASCS+DG+VIIWKEGNQNDWTQAH F+DHKSSVNSIAWAPHELGL LA
Sbjct: 61  VAWAHPKFGSILASCSHDGRVIIWKEGNQNDWTQAHVFSDHKSSVNSIAWAPHELGLCLA 120

Query: 121 CGSSDGNISVFTATADGGWDTTRIDQAHPVGVTSVSWAPAMAPGALVGLGLLDPVQKLAS 180
           CGSSDGNISVFTA +DG WDTT+IDQAHPVGVTSVSWAP+MAPGALVG GLLDPVQKL S
Sbjct: 121 CGSSDGNISVFTARSDGAWDTTKIDQAHPVGVTSVSWAPSMAPGALVGSGLLDPVQKLVS 180

Query: 181 CGCDNTVKVWKMYNGIWKMDCFPALQMHSDWVRSVAWAPNLGLPKSTIASASQDGTVVIW 240
            GCDNTVKVWK+YNG WKMDCFPALQMH+DWVR VAWAPNLGLPKSTIASASQDGTVVIW
Sbjct: 181 GGCDNTVKVWKLYNGNWKMDCFPALQMHTDWVRDVAWAPNLGLPKSTIASASQDGTVVIW 240

Query: 241 TCAKEGEQWEGRVLKDFKTPVWSVSWSLTGNLLAVADA-NNVTLWKEAVDGEWQQVSVVE 299
           T AKEG+QWEGRVLKDFKTPVW VSWSLTGNLLAVAD  NNVTLWK++VDGEWQQV+ V+
Sbjct: 241 TVAKEGDQWEGRVLKDFKTPVWRVSWSLTGNLLAVADGNNNVTLWKDSVDGEWQQVTTVD 300

Query: 300 P 300
           P
Sbjct: 301 P 301

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147801593|emb|CAN63472.1| hypothetical protein VITISV_000787 [Vitis vinifera]

 Score =  542 bits (1397), Expect = e-152,   Method: Compositional matrix adjust.
 Identities = 264/301 (87%), Positives = 283/301 (94%), Gaps = 1/301 (0%)

Query: 1   MPAQKIETGHEDTVHDVAMDFYGKRLATASSDSSIKIIGLSNSASQHLATLKGHRGPVWQ 60
           MP+QKI+TGH+DTVHDVAMD+YGKR+ATASSDS+ KIIG+SN+ASQHLATL GH+GPVWQ
Sbjct: 1   MPSQKIKTGHQDTVHDVAMDYYGKRVATASSDSTXKIIGVSNNASQHLATLTGHQGPVWQ 60

Query: 61  VAWAHPKFGSILASCSYDGQVIIWKEGNQNDWTQAHTFNDHKSSVNSIAWAPHELGLSLA 120
           VAWAHPKFGSILASCS DG+VIIWKEGNQNDWTQAH F+DHKSSVNSIAWAPHELGL LA
Sbjct: 61  VAWAHPKFGSILASCSCDGRVIIWKEGNQNDWTQAHVFSDHKSSVNSIAWAPHELGLCLA 120

Query: 121 CGSSDGNISVFTATADGGWDTTRIDQAHPVGVTSVSWAPAMAPGALVGLGLLDPVQKLAS 180
           CGSSDGNISVFTA +DG WDTT+IDQAHPVGVTSVSWAP+MAPGALVG GLLDPVQKL S
Sbjct: 121 CGSSDGNISVFTARSDGAWDTTKIDQAHPVGVTSVSWAPSMAPGALVGSGLLDPVQKLVS 180

Query: 181 CGCDNTVKVWKMYNGIWKMDCFPALQMHSDWVRSVAWAPNLGLPKSTIASASQDGTVVIW 240
            GCDNTVKVWK+YNG WKMDCFPALQMH+DWVR VAWAPNLGLPKSTIASASQDGTVVIW
Sbjct: 181 GGCDNTVKVWKLYNGNWKMDCFPALQMHTDWVRDVAWAPNLGLPKSTIASASQDGTVVIW 240

Query: 241 TCAKEGEQWEGRVLKDFKTPVWSVSWSLTGNLLAVADA-NNVTLWKEAVDGEWQQVSVVE 299
           T  KEG+QWEG+VLKDFKTPVW VSWSLTGNLLAVAD  NNVTLWKEAVDGEWQQV+ VE
Sbjct: 241 TVDKEGDQWEGKVLKDFKTPVWRVSWSLTGNLLAVADGNNNVTLWKEAVDGEWQQVTTVE 300

Query: 300 P 300
           P
Sbjct: 301 P 301

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359494316|ref|XP_002266827.2| PREDICTED: protein SEC13 homolog [Vitis vinifera] gi|296089946|emb|CBI39765.3| unnamed protein product [Vitis vinifera]

 Score =  540 bits (1392), Expect = e-151,   Method: Compositional matrix adjust.
 Identities = 262/301 (87%), Positives = 283/301 (94%), Gaps = 1/301 (0%)

Query: 1   MPAQKIETGHEDTVHDVAMDFYGKRLATASSDSSIKIIGLSNSASQHLATLKGHRGPVWQ 60
           MP+QKI+TGH+DTVHDVAMD+YGKR+ATASSDS++KIIG+SN+ASQHLATL GH+GPVWQ
Sbjct: 1   MPSQKIKTGHQDTVHDVAMDYYGKRVATASSDSTVKIIGVSNNASQHLATLTGHQGPVWQ 60

Query: 61  VAWAHPKFGSILASCSYDGQVIIWKEGNQNDWTQAHTFNDHKSSVNSIAWAPHELGLSLA 120
           VAWAHPKFGSILASCS DG+VIIWKEGNQNDWTQAH F+D KSSVNSIAWAPHELGL LA
Sbjct: 61  VAWAHPKFGSILASCSCDGRVIIWKEGNQNDWTQAHVFSDRKSSVNSIAWAPHELGLCLA 120

Query: 121 CGSSDGNISVFTATADGGWDTTRIDQAHPVGVTSVSWAPAMAPGALVGLGLLDPVQKLAS 180
           CGSSDGNISVFTA +DG WDTT+IDQAHPVGVTSVSWAP+MAPGALVG GLLDPVQKL S
Sbjct: 121 CGSSDGNISVFTARSDGAWDTTKIDQAHPVGVTSVSWAPSMAPGALVGSGLLDPVQKLVS 180

Query: 181 CGCDNTVKVWKMYNGIWKMDCFPALQMHSDWVRSVAWAPNLGLPKSTIASASQDGTVVIW 240
            GCDNTVKVWK+YNG WKMDCFPALQMH+DWVR VAWAPNLGLPKSTIASASQDGTVVIW
Sbjct: 181 GGCDNTVKVWKLYNGNWKMDCFPALQMHTDWVRDVAWAPNLGLPKSTIASASQDGTVVIW 240

Query: 241 TCAKEGEQWEGRVLKDFKTPVWSVSWSLTGNLLAVADA-NNVTLWKEAVDGEWQQVSVVE 299
           T  KEG+QWEG+VLKDFKTPVW VSWSLTGNLLAVAD  NNVTLWKEAVDGEWQQV+ V+
Sbjct: 241 TVGKEGDQWEGKVLKDFKTPVWRVSWSLTGNLLAVADGNNNVTLWKEAVDGEWQQVTTVD 300

Query: 300 P 300
           P
Sbjct: 301 P 301

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356567320|ref|XP_003551869.1| PREDICTED: protein SEC13 homolog [Glycine max]

 Score =  540 bits (1390), Expect = e-151,   Method: Compositional matrix adjust.
 Identities = 258/301 (85%), Positives = 282/301 (93%), Gaps = 1/301 (0%)

Query: 1   MPAQKIETGHEDTVHDVAMDFYGKRLATASSDSSIKIIGLSNSASQHLATLKGHRGPVWQ 60
           MP+QK+ETGH+DTVHDVAMD+YGKRLATASSD +IKIIG+SN+ASQHLATL GH+GPVWQ
Sbjct: 1   MPSQKVETGHQDTVHDVAMDYYGKRLATASSDHTIKIIGVSNTASQHLATLTGHQGPVWQ 60

Query: 61  VAWAHPKFGSILASCSYDGQVIIWKEGNQNDWTQAHTFNDHKSSVNSIAWAPHELGLSLA 120
           V WAHPKFGS+LASCS+DG+VI+WKEGNQN+WTQAH F+DHKSSVNS+AWAPHELGL LA
Sbjct: 61  VVWAHPKFGSLLASCSFDGRVIVWKEGNQNEWTQAHVFDDHKSSVNSVAWAPHELGLCLA 120

Query: 121 CGSSDGNISVFTATADGGWDTTRIDQAHPVGVTSVSWAPAMAPGALVGLGLLDPVQKLAS 180
           CGSSDGNISVFTA ADGGWDT RIDQAHPVGVTSVSWAP+MAPGALVG GLLDPVQKL S
Sbjct: 121 CGSSDGNISVFTARADGGWDTARIDQAHPVGVTSVSWAPSMAPGALVGAGLLDPVQKLCS 180

Query: 181 CGCDNTVKVWKMYNGIWKMDCFPALQMHSDWVRSVAWAPNLGLPKSTIASASQDGTVVIW 240
            GCDNTVKVWK+ NG+WKMDCFPALQMH+DWVR VAWAPNLGLPKSTIASASQDG V+IW
Sbjct: 181 GGCDNTVKVWKLNNGLWKMDCFPALQMHTDWVRDVAWAPNLGLPKSTIASASQDGKVIIW 240

Query: 241 TCAKEGEQWEGRVLKDFKTPVWSVSWSLTGNLLAVADA-NNVTLWKEAVDGEWQQVSVVE 299
           T AKEG+QWEG+VL DFKTPVW VSWSLTGN+LAVAD  NNVTLWKEAVDGEWQQV+ VE
Sbjct: 241 TVAKEGDQWEGKVLNDFKTPVWRVSWSLTGNILAVADGNNNVTLWKEAVDGEWQQVTTVE 300

Query: 300 P 300
           P
Sbjct: 301 P 301

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225464146|ref|XP_002265971.1| PREDICTED: protein SEC13 homolog [Vitis vinifera]

 Score =  539 bits (1389), Expect = e-151,   Method: Compositional matrix adjust.
 Identities = 263/301 (87%), Positives = 284/301 (94%), Gaps = 1/301 (0%)

Query: 1   MPAQKIETGHEDTVHDVAMDFYGKRLATASSDSSIKIIGLSNSASQHLATLKGHRGPVWQ 60
           MP+QKI+TGH+DTVHDVAMD+YGKR+ATASSDS+IKIIG+SN+ASQHLATL GH+GPVWQ
Sbjct: 1   MPSQKIKTGHQDTVHDVAMDYYGKRVATASSDSTIKIIGVSNNASQHLATLTGHQGPVWQ 60

Query: 61  VAWAHPKFGSILASCSYDGQVIIWKEGNQNDWTQAHTFNDHKSSVNSIAWAPHELGLSLA 120
           VAWAHPKFGSILASCS DG+VIIWKEGNQN+WTQAH F+DHKSSVNSIAWAPHELGL LA
Sbjct: 61  VAWAHPKFGSILASCSCDGRVIIWKEGNQNEWTQAHVFSDHKSSVNSIAWAPHELGLCLA 120

Query: 121 CGSSDGNISVFTATADGGWDTTRIDQAHPVGVTSVSWAPAMAPGALVGLGLLDPVQKLAS 180
           CGSSDGNISVFTA +DG WDTT+IDQAHPVGVTSVSWAP+MAPGALVG GLLD VQKL S
Sbjct: 121 CGSSDGNISVFTARSDGTWDTTKIDQAHPVGVTSVSWAPSMAPGALVGSGLLDLVQKLVS 180

Query: 181 CGCDNTVKVWKMYNGIWKMDCFPALQMHSDWVRSVAWAPNLGLPKSTIASASQDGTVVIW 240
            GCDNTVKVWK+YNG WKMDCFPALQMH+DWVR VAWAPNLGLPKSTIASASQDGTVVIW
Sbjct: 181 GGCDNTVKVWKLYNGNWKMDCFPALQMHTDWVRDVAWAPNLGLPKSTIASASQDGTVVIW 240

Query: 241 TCAKEGEQWEGRVLKDFKTPVWSVSWSLTGNLLAVADA-NNVTLWKEAVDGEWQQVSVVE 299
           T AKEG+QWEG+VLKDFKTPVW VSWSLTGNLLAVAD  NNVTLWKEAVDGEWQQV+ V+
Sbjct: 241 TVAKEGDQWEGKVLKDFKTPVWRVSWSLTGNLLAVADGNNNVTLWKEAVDGEWQQVTTVD 300

Query: 300 P 300
           P
Sbjct: 301 P 301

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356527095|ref|XP_003532149.1| PREDICTED: protein SEC13 homolog [Glycine max]

 Score =  539 bits (1388), Expect = e-151,   Method: Compositional matrix adjust.
 Identities = 258/301 (85%), Positives = 281/301 (93%), Gaps = 1/301 (0%)

Query: 1   MPAQKIETGHEDTVHDVAMDFYGKRLATASSDSSIKIIGLSNSASQHLATLKGHRGPVWQ 60
           MP+QK+ETGH+DTVHDVAMD+YGKRLATASSD +IKIIG+SN+ASQHLATL GH+GPVWQ
Sbjct: 1   MPSQKVETGHQDTVHDVAMDYYGKRLATASSDHTIKIIGVSNTASQHLATLTGHQGPVWQ 60

Query: 61  VAWAHPKFGSILASCSYDGQVIIWKEGNQNDWTQAHTFNDHKSSVNSIAWAPHELGLSLA 120
           VAWAHPKFGS+LASCSYDG+VI+WKEGNQN+WTQAH F+DHKSSVNS+AWAPHELGL LA
Sbjct: 61  VAWAHPKFGSLLASCSYDGRVIVWKEGNQNEWTQAHVFDDHKSSVNSVAWAPHELGLCLA 120

Query: 121 CGSSDGNISVFTATADGGWDTTRIDQAHPVGVTSVSWAPAMAPGALVGLGLLDPVQKLAS 180
           CGSSDGNISV TA ADGGWDT RIDQAHPVGVTSVSWAP+MAPGALVG GLLDPVQKL S
Sbjct: 121 CGSSDGNISVLTARADGGWDTVRIDQAHPVGVTSVSWAPSMAPGALVGAGLLDPVQKLCS 180

Query: 181 CGCDNTVKVWKMYNGIWKMDCFPALQMHSDWVRSVAWAPNLGLPKSTIASASQDGTVVIW 240
            GCDNTVKVWK+ NG+WKMDCFPALQMH+DWVR VAWAPNLGLPKSTIASASQDG V+IW
Sbjct: 181 GGCDNTVKVWKLNNGLWKMDCFPALQMHTDWVRDVAWAPNLGLPKSTIASASQDGKVIIW 240

Query: 241 TCAKEGEQWEGRVLKDFKTPVWSVSWSLTGNLLAVADA-NNVTLWKEAVDGEWQQVSVVE 299
           T AKEG+QWEG+VL DF TPVW VSWSLTGN+LAVAD  NNVTLWKEAVDGEWQQV+ VE
Sbjct: 241 TVAKEGDQWEGKVLNDFNTPVWRVSWSLTGNILAVADGNNNVTLWKEAVDGEWQQVTTVE 300

Query: 300 P 300
           P
Sbjct: 301 P 301

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356527081|ref|XP_003532142.1| PREDICTED: protein SEC13 homolog [Glycine max]

 Score =  538 bits (1386), Expect = e-150,   Method: Compositional matrix adjust.
 Identities = 258/301 (85%), Positives = 280/301 (93%), Gaps = 1/301 (0%)

Query: 1   MPAQKIETGHEDTVHDVAMDFYGKRLATASSDSSIKIIGLSNSASQHLATLKGHRGPVWQ 60
           MP+QK+ETGH+DTVHDVAMD+YGKRLATASSD +IKIIG+SNSASQHLATL GH+GPVWQ
Sbjct: 1   MPSQKVETGHQDTVHDVAMDYYGKRLATASSDHTIKIIGVSNSASQHLATLTGHQGPVWQ 60

Query: 61  VAWAHPKFGSILASCSYDGQVIIWKEGNQNDWTQAHTFNDHKSSVNSIAWAPHELGLSLA 120
           V WAHPKFGS+LASCSYDG+VI+WKEGNQN+WTQAH F+DHKSSVNS+AWAPHELGL LA
Sbjct: 61  VVWAHPKFGSLLASCSYDGRVIVWKEGNQNEWTQAHVFDDHKSSVNSVAWAPHELGLCLA 120

Query: 121 CGSSDGNISVFTATADGGWDTTRIDQAHPVGVTSVSWAPAMAPGALVGLGLLDPVQKLAS 180
           CGSSDGNISV TA ADGGWDT RIDQAHPVGVTSVSWAP+MAPGALVG GLLDPVQKL S
Sbjct: 121 CGSSDGNISVLTARADGGWDTARIDQAHPVGVTSVSWAPSMAPGALVGAGLLDPVQKLCS 180

Query: 181 CGCDNTVKVWKMYNGIWKMDCFPALQMHSDWVRSVAWAPNLGLPKSTIASASQDGTVVIW 240
            GCDNTVKVWK+ NG+WKMDCFPALQMH+DWVR VAWAPNLGLPKSTIASASQDG V+IW
Sbjct: 181 GGCDNTVKVWKLNNGLWKMDCFPALQMHTDWVRDVAWAPNLGLPKSTIASASQDGKVIIW 240

Query: 241 TCAKEGEQWEGRVLKDFKTPVWSVSWSLTGNLLAVADA-NNVTLWKEAVDGEWQQVSVVE 299
           T AKEG+QWEG+VL DF TPVW VSWSLTGN+LAVAD  NNVTLWKEAVDGEWQQV+ VE
Sbjct: 241 TVAKEGDQWEGKVLNDFNTPVWRVSWSLTGNILAVADGNNNVTLWKEAVDGEWQQVTTVE 300

Query: 300 P 300
           P
Sbjct: 301 P 301

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147856741|emb|CAN81348.1| hypothetical protein VITISV_021485 [Vitis vinifera]

 Score =  536 bits (1381), Expect = e-150,   Method: Compositional matrix adjust.
 Identities = 261/301 (86%), Positives = 282/301 (93%), Gaps = 1/301 (0%)

Query: 1   MPAQKIETGHEDTVHDVAMDFYGKRLATASSDSSIKIIGLSNSASQHLATLKGHRGPVWQ 60
           MP+QKI+TGH+DTVHDVAMD+YGKR+ATASSDS+IKIIG+SN+ASQHLATL GH+GPVWQ
Sbjct: 1   MPSQKIKTGHQDTVHDVAMDYYGKRVATASSDSTIKIIGVSNNASQHLATLTGHQGPVWQ 60

Query: 61  VAWAHPKFGSILASCSYDGQVIIWKEGNQNDWTQAHTFNDHKSSVNSIAWAPHELGLSLA 120
           VAWAHPKFGSILASCS DG+VIIWKEGNQN+WTQAH F+DHKSSVNSIAWAPHELGL LA
Sbjct: 61  VAWAHPKFGSILASCSCDGRVIIWKEGNQNEWTQAHVFSDHKSSVNSIAWAPHELGLCLA 120

Query: 121 CGSSDGNISVFTATADGGWDTTRIDQAHPVGVTSVSWAPAMAPGALVGLGLLDPVQKLAS 180
           CGSSDGNISVFTA +DG WD T+IDQAHP+GVTSVSWAP MAPGALVG GLLD VQKL S
Sbjct: 121 CGSSDGNISVFTARSDGAWDPTKIDQAHPIGVTSVSWAPXMAPGALVGSGLLDLVQKLVS 180

Query: 181 CGCDNTVKVWKMYNGIWKMDCFPALQMHSDWVRSVAWAPNLGLPKSTIASASQDGTVVIW 240
            GCDNTVKVWK+YNG WKMDCFPALQMH+DWVR VAWAPNLGLPKSTIASASQDGTVVIW
Sbjct: 181 GGCDNTVKVWKLYNGNWKMDCFPALQMHTDWVRDVAWAPNLGLPKSTIASASQDGTVVIW 240

Query: 241 TCAKEGEQWEGRVLKDFKTPVWSVSWSLTGNLLAVADA-NNVTLWKEAVDGEWQQVSVVE 299
           T AKEG+QWEG+VLKDFKTPVW VSWSLTGNLLAVAD  NNVTLWKEAVDGEWQQV+ V+
Sbjct: 241 TVAKEGDQWEGKVLKDFKTPVWRVSWSLTGNLLAVADGNNNVTLWKEAVDGEWQQVTTVD 300

Query: 300 P 300
           P
Sbjct: 301 P 301

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255639691|gb|ACU20139.1| unknown [Glycine max]

 Score =  536 bits (1381), Expect = e-150,   Method: Compositional matrix adjust.
 Identities = 257/301 (85%), Positives = 280/301 (93%), Gaps = 1/301 (0%)

Query: 1   MPAQKIETGHEDTVHDVAMDFYGKRLATASSDSSIKIIGLSNSASQHLATLKGHRGPVWQ 60
           MP+QK+ETGH+DTVHDVAMD+YGKRLATASSD +IKIIG+SN+ASQHLATL GH+GPVWQ
Sbjct: 1   MPSQKVETGHQDTVHDVAMDYYGKRLATASSDHTIKIIGVSNTASQHLATLTGHQGPVWQ 60

Query: 61  VAWAHPKFGSILASCSYDGQVIIWKEGNQNDWTQAHTFNDHKSSVNSIAWAPHELGLSLA 120
           VAWAHPKFGS+LASCSYDG+VI+WKEGNQN+WTQAH F+DHKSSVNS+AWAPHELGL LA
Sbjct: 61  VAWAHPKFGSLLASCSYDGRVIVWKEGNQNEWTQAHVFDDHKSSVNSVAWAPHELGLCLA 120

Query: 121 CGSSDGNISVFTATADGGWDTTRIDQAHPVGVTSVSWAPAMAPGALVGLGLLDPVQKLAS 180
           CGSSDGNISV TA ADGGWDT  IDQAHPVGVTSVSWAP+MAPGALVG GLLDPVQKL S
Sbjct: 121 CGSSDGNISVLTARADGGWDTVSIDQAHPVGVTSVSWAPSMAPGALVGAGLLDPVQKLCS 180

Query: 181 CGCDNTVKVWKMYNGIWKMDCFPALQMHSDWVRSVAWAPNLGLPKSTIASASQDGTVVIW 240
            GCDNTVKVWK+ NG+WKMDCFPALQMH+DWVR VAWAPNLGLPKSTIASASQDG V+IW
Sbjct: 181 GGCDNTVKVWKLNNGLWKMDCFPALQMHTDWVRDVAWAPNLGLPKSTIASASQDGKVIIW 240

Query: 241 TCAKEGEQWEGRVLKDFKTPVWSVSWSLTGNLLAVADA-NNVTLWKEAVDGEWQQVSVVE 299
           T AKEG+QWEG+VL DF TPVW VSWSLTGN+LAVAD  NNVTLWKEAVDGEWQQV+ VE
Sbjct: 241 TVAKEGDQWEGKVLNDFNTPVWRVSWSLTGNILAVADGNNNVTLWKEAVDGEWQQVTTVE 300

Query: 300 P 300
           P
Sbjct: 301 P 301

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	302
TAIR|locus:2045648	302	AT2G30050 "AT2G30050" [Arabido	0.993	0.993	0.831	2.6e-141
TAIR|locus:2100267	302	AT3G01340 "AT3G01340" [Arabido	0.993	0.993	0.817	1.9e-140
ZFIN|ZDB-GENE-040426-2649	320	sec13 "SEC13 homolog (S. cerev	0.960	0.906	0.546	2.5e-88
UNIPROTKB|E1BVC4	320	SEC13 "Uncharacterized protein	0.960	0.906	0.546	8.6e-88
UNIPROTKB|F1PDM3	322	SEC13 "Uncharacterized protein	0.960	0.900	0.548	1.4e-87
MGI|MGI:99832	322	Sec13 "SEC13 homolog (S. cerev	0.960	0.900	0.545	1.8e-87
RGD|1359555	322	Sec13 "SEC13 homolog (S. cerev	0.960	0.900	0.545	1.8e-87
UNIPROTKB|Q3ZCC9	322	SEC13 "Protein SEC13 homolog"	0.960	0.900	0.545	9.9e-87
UNIPROTKB|P55735	322	SEC13 "Protein SEC13 homolog"	0.960	0.900	0.538	3.3e-86
FB|FBgn0024509	386	Sec13 "Sec13 ortholog (S. cere	0.960	0.751	0.516	5.8e-82

TAIR|locus:2045648 AT2G30050 "AT2G30050" [Arabidopsis thaliana (taxid:3702)]

 Score = 1382 (491.5 bits), Expect = 2.6e-141, P = 2.6e-141
 Identities = 251/302 (83%), Positives = 270/302 (89%)

Query:     1 MPAQKIETGHEDTVHDVAMDFYGKRLATASSDSSIKIIGLSNSA-SQHLATLKGHRGPVW 59
             MP QKIETGHED VHDV MD+YGKR+ATASSD +IKI G+SN+  SQ LATL GHRGPVW
Sbjct:     1 MPGQKIETGHEDIVHDVQMDYYGKRIATASSDCTIKITGVSNNGGSQQLATLTGHRGPVW 60

Query:    60 QVAWAHPKFGSILASCSYDGQVIIWKEGNQNDWTQAHTFNDHKSSVNSIAWAPHELGLSL 119
             +VAWAHPK+GSILASCSYDGQVI+WKEGNQN WTQ H F DHKSSVNSIAWAPH++GLSL
Sbjct:    61 EVAWAHPKYGSILASCSYDGQVILWKEGNQNQWTQDHVFTDHKSSVNSIAWAPHDIGLSL 120

Query:   120 ACGSSDGNISVFTATADGGWDTTRIDQAHPVGVTSVSWAPAMAPGALVGLGLLDPVQKLA 179
             ACGSSDGNISVFTA ADGGWDT+RIDQAHPVGVTSVSWAPA APGALV  GLLDPV KLA
Sbjct:   121 ACGSSDGNISVFTARADGGWDTSRIDQAHPVGVTSVSWAPATAPGALVSSGLLDPVYKLA 180

Query:   180 SCGCDNTVKVWKMYNGIWKMDCFPALQMHSDWVRSVAWAPNLGLPKSTIASASQDGTVVI 239
             S GCDNTVKVWK+ NG WKMDCFPALQ H+DWVR VAWAPNLGLPKSTIAS SQDG V+I
Sbjct:   181 SGGCDNTVKVWKLANGSWKMDCFPALQKHTDWVRDVAWAPNLGLPKSTIASGSQDGKVII 240

Query:   240 WTCAKEGEQWEGRVLKDFKTPVWSVSWSLTGNLLAVADANN-VTLWKEAVDGEWQQVSVV 298
             WT  KEGEQWEG+VLKDF TPVW VSWSLTGNLLAV+D NN VT+WKEAVDGEW+QV+ V
Sbjct:   241 WTVGKEGEQWEGKVLKDFMTPVWRVSWSLTGNLLAVSDGNNNVTVWKEAVDGEWEQVTAV 300

Query:   299 EP 300
             EP
Sbjct:   301 EP 302

GO:0000166 "nucleotide binding" evidence=ISS

GO:0005737 "cytoplasm" evidence=ISM

GO:0005834 "heterotrimeric G-protein complex" evidence=ISS

GO:0005730 "nucleolus" evidence=IDA

GO:0005829 "cytosol" evidence=RCA

GO:0005635 "nuclear envelope" evidence=IDA

GO:0005643 "nuclear pore" evidence=IDA

GO:0006098 "pentose-phosphate shunt" evidence=RCA

GO:0009651 "response to salt stress" evidence=RCA

GO:0006900 "membrane budding" evidence=ISS

TAIR|locus:2100267 AT3G01340 "AT3G01340" [Arabidopsis thaliana (taxid:3702)]

 Score = 1374 (488.7 bits), Expect = 1.9e-140, P = 1.9e-140
 Identities = 247/302 (81%), Positives = 269/302 (89%)

Query:     1 MPAQKIETGHEDTVHDVAMDFYGKRLATASSDSSIKIIGLSNSA-SQHLATLKGHRGPVW 59
             MP QKIETGH DT+HDV MD+YGKR+ATASSD +IKI G+SNS  SQHLATL GHRGPVW
Sbjct:     1 MPPQKIETGHSDTIHDVVMDYYGKRVATASSDCTIKITGVSNSGGSQHLATLTGHRGPVW 60

Query:    60 QVAWAHPKFGSILASCSYDGQVIIWKEGNQNDWTQAHTFNDHKSSVNSIAWAPHELGLSL 119
             QVAWAHPKFGS+LASCSYDGQ+I+WKEGNQN WTQAH F DHK SVNSIAWAPHELGLSL
Sbjct:    61 QVAWAHPKFGSLLASCSYDGQIILWKEGNQNQWTQAHVFTDHKVSVNSIAWAPHELGLSL 120

Query:   120 ACGSSDGNISVFTATADGGWDTTRIDQAHPVGVTSVSWAPAMAPGALVGLGLLDPVQKLA 179
             ACG+SDGNISVF+A ADGGWDTT+IDQAHPVGVTSVSWAPA  PGALV  G++DPV KLA
Sbjct:   121 ACGASDGNISVFSARADGGWDTTKIDQAHPVGVTSVSWAPATEPGALVSSGMIDPVYKLA 180

Query:   180 SCGCDNTVKVWKMYNGIWKMDCFPALQMHSDWVRSVAWAPNLGLPKSTIASASQDGTVVI 239
             S GCD+TVKVWK  NG WKMDCFPAL  H+DWVR VAWAPNLGLPKSTIAS S+DG V+I
Sbjct:   181 SGGCDSTVKVWKFSNGSWKMDCFPALNKHTDWVRDVAWAPNLGLPKSTIASGSEDGKVII 240

Query:   240 WTCAKEGEQWEGRVLKDFKTPVWSVSWSLTGNLLAVADANN-VTLWKEAVDGEWQQVSVV 298
             WT  KEGEQWEG VLKDFKTPVW VSWSLTGNLLAV+D NN VT+WKE+VDGEW+QV+VV
Sbjct:   241 WTIGKEGEQWEGTVLKDFKTPVWRVSWSLTGNLLAVSDGNNNVTVWKESVDGEWEQVTVV 300

Query:   299 EP 300
             EP
Sbjct:   301 EP 302

GO:0000166 "nucleotide binding" evidence=ISS

GO:0005737 "cytoplasm" evidence=ISM

GO:0006886 "intracellular protein transport" evidence=ISS

GO:0005829 "cytosol" evidence=IDA

GO:0006900 "membrane budding" evidence=ISS

ZFIN|ZDB-GENE-040426-2649 sec13 "SEC13 homolog (S. cerevisiae)" [Danio rerio (taxid:7955)]

 Score = 882 (315.5 bits), Expect = 2.5e-88, P = 2.5e-88
 Identities = 163/298 (54%), Positives = 205/298 (68%)

Query:     6 IETGHEDTVHDVAMDFYGKRLATASSDSSIKIIGLSNSASQHLATLKGHRGPVWQVAWAH 65
             ++T HED +HD  MD+YG RLAT SSD S+KI  + N     +A L+GH GPVWQVAWAH
Sbjct:     8 VDTSHEDMIHDAQMDYYGTRLATCSSDRSVKIFDVKNGGQILVADLRGHEGPVWQVAWAH 67

Query:    66 PKFGSILASCSYDGQVIIWKEGNQNDWTQAHTFNDHKSSVNSIAWAPHELGLSLACGSSD 125
             P +G+ILASCSYD +VIIWKE N   W + + +  H SSVNS+ W P++ GL LACGSSD
Sbjct:    68 PMYGNILASCSYDRKVIIWKEENST-WDKMYEYTGHDSSVNSVCWGPYDFGLILACGSSD 126

Query:   126 GNISVFTATADGGWDTTRIDQAHPVGVTSVSWAPAMAPGALVGLGL-LDP--VQKLASCG 182
             G ISV T + DG WD  +I+ AH +G  +VSWAPA+ PG+L+       P  +++  S G
Sbjct:   127 GAISVLTCSGDGHWDIKKINNAHTIGCNAVSWAPAVVPGSLIEQPTGQKPNYIKRFVSGG 186

Query:   183 CDNTVKVWKMYNGIWKMDCFPALQMHSDWVRSVAWAPNLGLPKSTIASASQDGTVVIWTC 242
             CDN VK+WK  +G WK D    L+ HSDWVR V WAP++GLP STIAS SQDG V IWTC
Sbjct:   187 CDNLVKLWKEEDGQWKED--QKLEAHSDWVRDVGWAPSIGLPTSTIASCSQDGRVFIWTC 244

Query:   243 AKE-GEQWEGRVLKDFKTPVWSVSWSLTGNLLAVADANN-VTLWKEAVDGEWQQVSVV 298
                 G  W  ++L  F   VW VSWS+TGN+LAV+  +N VTLWKE+VDG+W  +S V
Sbjct:   245 DDPAGNTWTAKLLHKFNDVVWHVSWSITGNILAVSGGDNKVTLWKESVDGQWACISDV 302

GO:0003674 "molecular_function" evidence=ND

GO:0055123 "digestive system development" evidence=IMP

GO:0001889 "liver development" evidence=IMP

GO:0070971 "endoplasmic reticulum exit site" evidence=IDA

GO:0007029 "endoplasmic reticulum organization" evidence=IMP

GO:0051216 "cartilage development" evidence=IMP

GO:0006888 "ER to Golgi vesicle-mediated transport" evidence=ISS

GO:0070278 "extracellular matrix constituent secretion" evidence=IMP

GO:0005622 "intracellular" evidence=ISS

UNIPROTKB|E1BVC4 SEC13 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 877 (313.8 bits), Expect = 8.6e-88, P = 8.6e-88
 Identities = 163/298 (54%), Positives = 205/298 (68%)

Query:     6 IETGHEDTVHDVAMDFYGKRLATASSDSSIKIIGLSNSASQHLATLKGHRGPVWQVAWAH 65
             ++T HED +HD  MD+YG RLAT SSD S+KI  + N     +A L+GH GPVWQVAWAH
Sbjct:     8 VDTSHEDMIHDAQMDYYGTRLATCSSDRSVKIFDVRNGGQILIADLRGHEGPVWQVAWAH 67

Query:    66 PKFGSILASCSYDGQVIIWKEGNQNDWTQAHTFNDHKSSVNSIAWAPHELGLSLACGSSD 125
             P +G+ILASCSYD +VIIWKE N   W + + +  H SSVNS+ WAPH+ GL LACGSSD
Sbjct:    68 PMYGNILASCSYDRKVIIWKEEN-GTWEKTYEYTGHDSSVNSVCWAPHDYGLILACGSSD 126

Query:   126 GNISVFTATADGGWDTTRIDQAHPVGVTSVSWAPAMAPGALVGLGL-LDP--VQKLASCG 182
             G IS+ + T DG W+  +I  AH +G  +VSWAPA+ PG+L+       P  +++ AS G
Sbjct:   127 GAISLLSYTGDGQWEVKKISNAHTIGCNAVSWAPAVVPGSLIEQPSGQKPNYIKRFASGG 186

Query:   183 CDNTVKVWKMYNGIWKMDCFPALQMHSDWVRSVAWAPNLGLPKSTIASASQDGTVVIWTC 242
             CDN VK+WK  +G WK +    L+ HSDWVR VAWAP++GLP STIAS SQDG V IWTC
Sbjct:   187 CDNLVKIWKEEDGQWKEE--QKLEAHSDWVRDVAWAPSIGLPTSTIASCSQDGRVFIWTC 244

Query:   243 AK-EGEQWEGRVLKDFKTPVWSVSWSLTGNLLAVADANN-VTLWKEAVDGEWQQVSVV 298
                 G  W  ++L  F   VW VSWS+T N+LAV+  +N VTLWKE+VDG W  +S V
Sbjct:   245 DDASGSSWSPKLLHKFNDVVWHVSWSITANILAVSGGDNKVTLWKESVDGLWACISDV 302

GO:0000776 "kinetochore" evidence=IEA

GO:0005635 "nuclear envelope" evidence=IEA

UNIPROTKB|F1PDM3 SEC13 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 875 (313.1 bits), Expect = 1.4e-87, P = 1.4e-87
 Identities = 164/299 (54%), Positives = 206/299 (68%)

Query:     6 IETGHEDTVHDVAMDFYGKRLATASSDSSIKIIGLSNSASQHLATLKGHRGPVWQVAWAH 65
             ++T HED +HD  MD+YG RLAT SSD S+KI  + N     +A L+GH GPVWQVAWAH
Sbjct:     8 VDTSHEDMIHDAQMDYYGTRLATCSSDRSVKIFDVRNGGQILIADLRGHEGPVWQVAWAH 67

Query:    66 PKFGSILASCSYDGQVIIWKEGNQNDWTQAHTFNDHKSSVNSIAWAPHELGLSLACGSSD 125
             P +G+ILASCSYD +VIIWKE N   W + H    H SSVNS+ WAPH+ GL LACGSSD
Sbjct:    68 PMYGNILASCSYDRKVIIWKEEN-GTWEKTHEHTGHDSSVNSVCWAPHDYGLILACGSSD 126

Query:   126 GNISVFTATADGGWDTTRIDQAHPVGVTSVSWAPAMAPGALVGLGL-LDP--VQKLASCG 182
             G IS+ T T +G W+  +I+ AH +G  +VSWAPA+ PG+L+       P  ++K AS G
Sbjct:   127 GAISLLTYTGEGQWEVKKINNAHTIGCNAVSWAPAVVPGSLIDQPSGQKPNYIKKFASGG 186

Query:   183 CDNTVKVWKMY-NGIWKMDCFPALQMHSDWVRSVAWAPNLGLPKSTIASASQDGTVVIWT 241
             CDN +K+WK   +G WK +    L+ HSDWVR VAWAP++GLP STIAS SQDG V IWT
Sbjct:   187 CDNLIKLWKEEEDGQWKEE--QKLEAHSDWVRDVAWAPSIGLPTSTIASCSQDGRVFIWT 244

Query:   242 CAK-EGEQWEGRVLKDFKTPVWSVSWSLTGNLLAVADANN-VTLWKEAVDGEWQQVSVV 298
             C    G  W  ++L  F   VW VSWS+T N+LAV+  +N VTLWKE+VDG+W  +S V
Sbjct:   245 CDDTSGNTWSPKLLHKFNDVVWHVSWSITANILAVSGGDNKVTLWKESVDGQWVCISDV 303

GO:0005635 "nuclear envelope" evidence=IEA

GO:0000776 "kinetochore" evidence=IEA

MGI|MGI:99832 Sec13 "SEC13 homolog (S. cerevisiae)" [Mus musculus (taxid:10090)]

 Score = 874 (312.7 bits), Expect = 1.8e-87, P = 1.8e-87
 Identities = 163/299 (54%), Positives = 207/299 (69%)

Query:     6 IETGHEDTVHDVAMDFYGKRLATASSDSSIKIIGLSNSASQHLATLKGHRGPVWQVAWAH 65
             ++T HED +HD  MD+YG RLAT SSD S+KI  + N     +A L+GH GPVWQVAWAH
Sbjct:     8 VDTSHEDMIHDAQMDYYGTRLATCSSDRSVKIFDVRNGGQILIADLRGHEGPVWQVAWAH 67

Query:    66 PKFGSILASCSYDGQVIIWKEGNQNDWTQAHTFNDHKSSVNSIAWAPHELGLSLACGSSD 125
             P +G+ILASCSYD +VIIWKE N   W + H  + H SSVNS+ WAPH+ GL LACGSSD
Sbjct:    68 PMYGNILASCSYDRKVIIWKEEN-GTWEKTHEHSGHDSSVNSVCWAPHDYGLILACGSSD 126

Query:   126 GNISVFTATADGGWDTTRIDQAHPVGVTSVSWAPAMAPGALVGLGL-LDP--VQKLASCG 182
             G IS+ T T +G W+  +I+ AH +G  +VSWAPA+ PG+L+       P  ++K AS G
Sbjct:   127 GAISLLTYTGEGQWEVKKINNAHTIGCNAVSWAPAVVPGSLIDQPSGQKPNYIKKFASGG 186

Query:   183 CDNTVKVWKMY-NGIWKMDCFPALQMHSDWVRSVAWAPNLGLPKSTIASASQDGTVVIWT 241
             CDN +K+W+   +G WK +    L+ HSDWVR VAWAP++GLP STIAS SQDG V IWT
Sbjct:   187 CDNLIKLWREEEDGQWKEE--QKLEAHSDWVRDVAWAPSIGLPTSTIASCSQDGRVFIWT 244

Query:   242 CAK-EGEQWEGRVLKDFKTPVWSVSWSLTGNLLAVADANN-VTLWKEAVDGEWQQVSVV 298
             C    G  W  ++L  F   VW VSWS+T N+LAV+  +N VTLWKE+VDG+W  +S V
Sbjct:   245 CDDASGNMWSPKLLHKFNDVVWHVSWSITANILAVSGGDNKVTLWKESVDGQWVCISDV 303

GO:0005634 "nucleus" evidence=IEA

GO:0005635 "nuclear envelope" evidence=ISO

GO:0005643 "nuclear pore" evidence=IEA

GO:0005783 "endoplasmic reticulum" evidence=IEA

GO:0006810 "transport" evidence=IEA

GO:0006888 "ER to Golgi vesicle-mediated transport" evidence=ISA

GO:0015031 "protein transport" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0016192 "vesicle-mediated transport" evidence=IEA

GO:0031080 "nuclear pore outer ring" evidence=ISO

GO:0031410 "cytoplasmic vesicle" evidence=IEA

GO:0051028 "mRNA transport" evidence=IEA

RGD|1359555 Sec13 "SEC13 homolog (S. cerevisiae)" [Rattus norvegicus (taxid:10116)]

 Score = 874 (312.7 bits), Expect = 1.8e-87, P = 1.8e-87
 Identities = 163/299 (54%), Positives = 207/299 (69%)

Query:     6 IETGHEDTVHDVAMDFYGKRLATASSDSSIKIIGLSNSASQHLATLKGHRGPVWQVAWAH 65
             ++T HED +HD  MD+YG RLAT SSD S+KI  + N     +A L+GH GPVWQVAWAH
Sbjct:     8 VDTSHEDMIHDAQMDYYGTRLATCSSDRSVKIFDVRNGGQILIADLRGHEGPVWQVAWAH 67

Query:    66 PKFGSILASCSYDGQVIIWKEGNQNDWTQAHTFNDHKSSVNSIAWAPHELGLSLACGSSD 125
             P +G+ILASCSYD +VIIWKE N   W + H  + H SSVNS+ WAPH+ GL LACGSSD
Sbjct:    68 PMYGNILASCSYDRKVIIWKEEN-GTWEKTHEHSGHDSSVNSVCWAPHDYGLILACGSSD 126

Query:   126 GNISVFTATADGGWDTTRIDQAHPVGVTSVSWAPAMAPGALVGLGL-LDP--VQKLASCG 182
             G IS+ T T +G W+  +I+ AH +G  +VSWAPA+ PG+L+       P  ++K AS G
Sbjct:   127 GAISLLTYTGEGQWEVKKINNAHTIGCNAVSWAPAVVPGSLIDQPSGQKPNYIKKFASGG 186

Query:   183 CDNTVKVWKMY-NGIWKMDCFPALQMHSDWVRSVAWAPNLGLPKSTIASASQDGTVVIWT 241
             CDN +K+W+   +G WK +    L+ HSDWVR VAWAP++GLP STIAS SQDG V IWT
Sbjct:   187 CDNLIKLWREEEDGQWKEE--QKLEAHSDWVRDVAWAPSIGLPTSTIASCSQDGRVFIWT 244

Query:   242 CAK-EGEQWEGRVLKDFKTPVWSVSWSLTGNLLAVADANN-VTLWKEAVDGEWQQVSVV 298
             C    G  W  ++L  F   VW VSWS+T N+LAV+  +N VTLWKE+VDG+W  +S V
Sbjct:   245 CDDASGNMWSPKLLHKFNDVVWHVSWSITANILAVSGGDNKVTLWKESVDGQWVCISDV 303

GO:0005635 "nuclear envelope" evidence=ISO

GO:0005789 "endoplasmic reticulum membrane" evidence=IEA

GO:0006888 "ER to Golgi vesicle-mediated transport" evidence=IDA

GO:0012507 "ER to Golgi transport vesicle membrane" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

GO:0031080 "nuclear pore outer ring" evidence=ISO;ISS

GO:0051028 "mRNA transport" evidence=IEA

GO:0000776 "kinetochore" evidence=ISO

UNIPROTKB|Q3ZCC9 SEC13 "Protein SEC13 homolog" [Bos taurus (taxid:9913)]

 Score = 867 (310.3 bits), Expect = 9.9e-87, P = 9.9e-87
 Identities = 163/299 (54%), Positives = 205/299 (68%)

Query:     6 IETGHEDTVHDVAMDFYGKRLATASSDSSIKIIGLSNSASQHLATLKGHRGPVWQVAWAH 65
             ++T HED +HD  MD+YG RLAT SSD S+KI  + N     +A L+GH GPVWQVAWAH
Sbjct:     8 VDTSHEDMIHDAQMDYYGTRLATCSSDRSVKIFDVRNGGQILVADLRGHEGPVWQVAWAH 67

Query:    66 PKFGSILASCSYDGQVIIWKEGNQNDWTQAHTFNDHKSSVNSIAWAPHELGLSLACGSSD 125
             P +G+ILASCSYD +VIIWKE N   W + H    H SSVNS+ WAPH+ GL LACGSSD
Sbjct:    68 PMYGNILASCSYDRKVIIWKEEN-GTWEKTHEHTGHDSSVNSVCWAPHDYGLILACGSSD 126

Query:   126 GNISVFTATADGGWDTTRIDQAHPVGVTSVSWAPAMAPGALVGLGL-LDP--VQKLASCG 182
             G IS+ T T  G W+  +I+ AH +G  +VSWAPA+ PG+L+       P  ++K AS G
Sbjct:   127 GAISLLTYTGLGQWEVKKINNAHTIGCNAVSWAPAVVPGSLIDQPSGQKPNYIKKFASGG 186

Query:   183 CDNTVKVWKMY-NGIWKMDCFPALQMHSDWVRSVAWAPNLGLPKSTIASASQDGTVVIWT 241
             CDN +K+WK   +G WK +    L+ HSDWVR VAWAP++GLP STIAS SQDG V +WT
Sbjct:   187 CDNLIKLWKEEEDGQWKEE--QKLEAHSDWVRDVAWAPSIGLPTSTIASCSQDGRVFVWT 244

Query:   242 CAK-EGEQWEGRVLKDFKTPVWSVSWSLTGNLLAVADANN-VTLWKEAVDGEWQQVSVV 298
             C    G  W  ++L  F   VW VSWS+T N+LAV+  +N VTLWKE+VDG+W  +S V
Sbjct:   245 CDDASGNTWSPKLLHKFNDVVWHVSWSITANILAVSGGDNKVTLWKESVDGQWVCISDV 303

GO:0031080 "nuclear pore outer ring" evidence=ISS

GO:0012507 "ER to Golgi transport vesicle membrane" evidence=IEA

GO:0005789 "endoplasmic reticulum membrane" evidence=IEA

GO:0000776 "kinetochore" evidence=IEA

GO:0051028 "mRNA transport" evidence=IEA

GO:0016192 "vesicle-mediated transport" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

UNIPROTKB|P55735 SEC13 "Protein SEC13 homolog" [Homo sapiens (taxid:9606)]

 Score = 862 (308.5 bits), Expect = 3.3e-86, P = 3.3e-86
 Identities = 161/299 (53%), Positives = 207/299 (69%)

Query:     6 IETGHEDTVHDVAMDFYGKRLATASSDSSIKIIGLSNSASQHLATLKGHRGPVWQVAWAH 65
             ++T HED +HD  MD+YG RLAT SSD S+KI  + N     +A L+GH GPVWQVAWAH
Sbjct:     8 VDTSHEDMIHDAQMDYYGTRLATCSSDRSVKIFDVRNGGQILIADLRGHEGPVWQVAWAH 67

Query:    66 PKFGSILASCSYDGQVIIWKEGNQNDWTQAHTFNDHKSSVNSIAWAPHELGLSLACGSSD 125
             P +G+ILASCSYD +VIIW+E N   W ++H    H SSVNS+ WAPH+ GL LACGSSD
Sbjct:    68 PMYGNILASCSYDRKVIIWREEN-GTWEKSHEHAGHDSSVNSVCWAPHDYGLILACGSSD 126

Query:   126 GNISVFTATADGGWDTTRIDQAHPVGVTSVSWAPAMAPGALVG--LGLL-DPVQKLASCG 182
             G IS+ T T +G W+  +I+ AH +G  +VSWAPA+ PG+L+    G   + +++ AS G
Sbjct:   127 GAISLLTYTGEGQWEVKKINNAHTIGCNAVSWAPAVVPGSLIDHPSGQKPNYIKRFASGG 186

Query:   183 CDNTVKVWKMY-NGIWKMDCFPALQMHSDWVRSVAWAPNLGLPKSTIASASQDGTVVIWT 241
             CDN +K+WK   +G WK +    L+ HSDWVR VAWAP++GLP STIAS SQDG V IWT
Sbjct:   187 CDNLIKLWKEEEDGQWKEE--QKLEAHSDWVRDVAWAPSIGLPTSTIASCSQDGRVFIWT 244

Query:   242 CAKEGEQ-WEGRVLKDFKTPVWSVSWSLTGNLLAVADANN-VTLWKEAVDGEWQQVSVV 298
             C       W  ++L  F   VW VSWS+T N+LAV+  +N VTLWKE+VDG+W  +S V
Sbjct:   245 CDDASSNTWSPKLLHKFNDVVWHVSWSITANILAVSGGDNKVTLWKESVDGQWVCISDV 303

GO:0051028 "mRNA transport" evidence=IEA

GO:0031080 "nuclear pore outer ring" evidence=NAS;IDA

GO:0005515 "protein binding" evidence=IPI

GO:0005635 "nuclear envelope" evidence=IDA

GO:0006886 "intracellular protein transport" evidence=NAS

GO:0000776 "kinetochore" evidence=IDA

GO:0000087 "M phase of mitotic cell cycle" evidence=TAS

GO:0000236 "mitotic prometaphase" evidence=TAS

GO:0000278 "mitotic cell cycle" evidence=TAS

GO:0002474 "antigen processing and presentation of peptide antigen via MHC class I" evidence=TAS

GO:0005789 "endoplasmic reticulum membrane" evidence=TAS

GO:0005829 "cytosol" evidence=TAS

GO:0006888 "ER to Golgi vesicle-mediated transport" evidence=TAS

GO:0012507 "ER to Golgi transport vesicle membrane" evidence=TAS

GO:0016044 "cellular membrane organization" evidence=TAS

GO:0018279 "protein N-linked glycosylation via asparagine" evidence=TAS

GO:0019886 "antigen processing and presentation of exogenous peptide antigen via MHC class II" evidence=TAS

GO:0043687 "post-translational protein modification" evidence=TAS

GO:0044267 "cellular protein metabolic process" evidence=TAS

GO:0048208 "COPII vesicle coating" evidence=TAS

FB|FBgn0024509 Sec13 "Sec13 ortholog (S. cerevisiae)" [Drosophila melanogaster (taxid:7227)]

 Score = 822 (294.4 bits), Expect = 5.8e-82, P = 5.8e-82
 Identities = 154/298 (51%), Positives = 202/298 (67%)

Query:     4 QKIETGHEDTVHDVAMDFYGKRLATASSDSSIKIIGLSNSASQHLATLKGHRGPVWQVAW 63
             Q+I+T HED VH  A+DFYG  LAT SSD S++I   S   ++ LA LKGH+GPVWQVAW
Sbjct:    36 QEIDTEHEDMVHHAALDFYGLLLATCSSDGSVRIFH-SRKNNKALAELKGHQGPVWQVAW 94

Query:    64 AHPKFGSILASCSYDGQVIIWKEGNQNDWTQAHTFNDHKSSVNSIAWAPHELGLSLACGS 123
             AHPKFG+ILASCSYD +VI+WK     DWT+ + +++H SSVNS+ +AP E GL LAC S
Sbjct:    95 AHPKFGNILASCSYDRKVIVWKSTTPRDWTKLYEYSNHDSSVNSVDFAPSEYGLVLACAS 154

Query:   124 SDGNISVFTATADGG-WDTTRIDQAHPVGVTSVSWAPAMAPGALVGLGLLD---PVQKLA 179
             SDG++SV T   + G WD  +I  AH +GV ++SW PA AP       +      V++L 
Sbjct:   155 SDGSVSVLTCNTEYGVWDAKKIPNAHTIGVNAISWCPAQAPDPAFDQRVTSRSAAVKRLV 214

Query:   180 SCGCDNTVKVWKMYNGIWKMDCFPALQMHSDWVRSVAWAPNLGLPKSTIASASQDGTVVI 239
             S GCDN VK+W+  N  W  +    L+ HSDWVR VAWAP++GLP+S IA+ASQD  V++
Sbjct:   215 SGGCDNLVKIWREDNDRWVEE--HRLEAHSDWVRDVAWAPSIGLPRSQIATASQDRHVIV 272

Query:   240 WTCAKEGEQWEGRVLKDFKTPVWSVSWSLTGNLLAVADA-NNVTLWKEAVDGEWQQVS 296
             W+   +  +W   VL  F   VWS+SWS TGN+LAV    NNVTLWKE  +G+W +++
Sbjct:   273 WSSNADLSEWTSTVLHTFDDAVWSISWSTTGNILAVTGGDNNVTLWKENTEGQWIRIN 330

GO:0006900 "membrane budding" evidence=ISS

GO:0008363 "larval chitin-based cuticle development" evidence=IMP

GO:0035293 "chitin-based larval cuticle pattern formation" evidence=IMP

GO:0010629 "negative regulation of gene expression" evidence=IDA

GO:0031080 "nuclear pore outer ring" evidence=ISS

GO:0007184 "SMAD protein import into nucleus" evidence=IMP

GO:0006607 "NLS-bearing substrate import into nucleus" evidence=IMP

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
A2QHM1	SEC13_ASPNC	No assigned EC number	0.4823	0.9768	0.9577	yes	no
Q2UG43	SEC13_ASPOR	No assigned EC number	0.4747	0.9337	0.9591	yes	no
P0CS50	SEC13_CRYNJ	No assigned EC number	0.4343	0.9569	0.8525	yes	no
P53024	SEC13_PICPG	No assigned EC number	0.4781	0.9337	0.9757	yes	no
Q6FNV4	SC131_CANGA	No assigned EC number	0.4545	0.9635	0.9765	yes	no
Q6CSZ5	SEC13_KLULA	No assigned EC number	0.4542	0.9437	0.9437	yes	no
Q3ZCC9	SEC13_BOVIN	No assigned EC number	0.5418	0.9602	0.9006	yes	no
Q5XFW8	SEC13_RAT	No assigned EC number	0.5418	0.9602	0.9006	yes	no
Q9D1M0	SEC13_MOUSE	No assigned EC number	0.5418	0.9602	0.9006	yes	no
Q54DS8	SEC13_DICDI	No assigned EC number	0.5082	0.9768	0.9800	yes	no
Q6BIR1	SEC13_DEBHA	No assigned EC number	0.4581	0.9569	0.9730	yes	no
Q4WNK7	SEC13_ASPFU	No assigned EC number	0.4831	0.9304	0.9183	yes	no
Q75BS2	SEC13_ASHGO	No assigned EC number	0.4478	0.9536	0.9762	yes	no
P55735	SEC13_HUMAN	No assigned EC number	0.5351	0.9602	0.9006	yes	no
Q9N4A7	SEC13_CAEEL	No assigned EC number	0.3791	0.9304	0.8977	yes	no
Q5B563	SEC13_EMENI	No assigned EC number	0.4803	0.9437	0.9223	yes	no
Q04491	SEC13_YEAST	No assigned EC number	0.4707	0.9403	0.9562	yes	no
O94319	SEC13_SCHPO	No assigned EC number	0.4813	0.9470	0.9629	yes	no
A3LNW3	SEC13_PICST	No assigned EC number	0.46	0.9602	0.9602	yes	no
Q6BZX5	SEC13_YARLI	No assigned EC number	0.49	0.9536	0.9664	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	GSVIVG00020856001	SubName- Full=Putative uncharacterized protein (Chromosome chr14 scaffold_21, whole genome shotgun sequence); (301 aa)
		(Vitis vinifera)
Predicted Functional Partners:
	GSVIVG00003489001	SubName- Full=Chromosome undetermined scaffold_144, whole genome shotgun sequence; (763 aa)					•	•	•		0.846
	GSVIVG00000803001	SubName- Full=Chromosome undetermined scaffold_108, whole genome shotgun sequence; (756 aa)					•	•	•		0.839
	GSVIVG00029138001	SubName- Full=Chromosome chr12 scaffold_47, whole genome shotgun sequence; (1269 aa)						•	•		0.838
	GSVIVG00020123001	SubName- Full=Chromosome chr5 scaffold_2, whole genome shotgun sequence; (755 aa)					•	•	•		0.834
	GSVIVG00027759001	SubName- Full=Chromosome chr19 scaffold_4, whole genome shotgun sequence; (489 aa)						•			0.819
	GSVIVG00000457001	SubName- Full=Chromosome chr2 scaffold_105, whole genome shotgun sequence; (877 aa)						•	•		0.812
	GSVIVG00033116001	SubName- Full=Chromosome chr5 scaffold_64, whole genome shotgun sequence; (193 aa)						•			0.800
	GSVIVG00027411001	SubName- Full=Chromosome chr19 scaffold_4, whole genome shotgun sequence; (77 aa)						•			0.800
	GSVIVG00022624001	SubName- Full=Chromosome chr14 scaffold_27, whole genome shotgun sequence; (140 aa)						•			0.800
	GSVIVG00000597001	SubName- Full=Chromosome chr8 scaffold_106, whole genome shotgun sequence; (926 aa)			•						0.494

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	302
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	2e-32
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	2e-31
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	2e-27
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	6e-26
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	5e-22
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	9e-17
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	2e-11
smart00320	40	smart00320, WD40, WD40 repeats	4e-06
pfam00400	39	pfam00400, WD40, WD domain, G-beta repeat	9e-06
PTZ00421	493	PTZ00421, PTZ00421, coronin; Provisional	1e-05
pfam00400	39	pfam00400, WD40, WD domain, G-beta repeat	2e-04
smart00320	40	smart00320, WD40, WD40 repeats	3e-04
smart00320	40	smart00320, WD40, WD40 repeats	0.001
pfam00400	39	pfam00400, WD40, WD domain, G-beta repeat	0.001
PTZ00420	568	PTZ00420, PTZ00420, coronin; Provisional	0.002
pfam00400	39	pfam00400, WD40, WD domain, G-beta repeat	0.004

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score =  121 bits (305), Expect = 2e-32
 Identities = 81/284 (28%), Positives = 116/284 (40%), Gaps = 48/284 (16%)

Query: 8   TGHEDTVHDVAMDFYGKRLATASSDSSIKIIGLSNSASQHLATLKGHRGPVWQVAWAHPK 67
            GH   V DVA    G  LA+ SSD +I++  L       + TL GH   V  VA+  P 
Sbjct: 48  KGHTGPVRDVAASADGTYLASGSSDKTIRLWDLETGEC--VRTLTGHTSYVSSVAF-SPD 104

Query: 68  FGSILASCSYDGQVIIWKEGNQNDWTQAHTFNDHKSSVNSIAWAPHELGLSLACGSSDGN 127
            G IL+S S D  + +W            T   H   VNS+A++P   G  +A  S DG 
Sbjct: 105 -GRILSSSSRDKTIKVWDV---ETGKCLTTLRGHTDWVNSVAFSPD--GTFVASSSQDGT 158

Query: 128 ISVFTATADGGWDTT-----RIDQAHPVGVTSVSWAPAMAPGALVGLGLLDPVQKLASCG 182
           I +        WD            H   V SV+++P                +KL S  
Sbjct: 159 IKL--------WDLRTGKCVATLTGHTGEVNSVAFSP--------------DGEKLLSSS 196

Query: 183 CDNTVKVWKMYNGIWKMDCFPALQMHSDWVRSVAWAPNLGLPKSTIASASQDGTVVIWTC 242
            D T+K+W +  G            H + V SVA++P+  L    +AS S+DGT+ +W  
Sbjct: 197 SDGTIKLWDLSTGKCLGTLRG----HENGVNSVAFSPDGYL----LASGSEDGTIRVWDL 248

Query: 243 AKEGEQWEGRVLKDFKTPVWSVSWSLTGNLLAVADANN-VTLWK 285
                    + L      V S++WS  G  LA   A+  + +W 
Sbjct: 249 RTGECV---QTLSGHTNSVTSLAWSPDGKRLASGSADGTIRIWD 289

Length = 289

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score =  118 bits (297), Expect = 2e-31
 Identities = 81/280 (28%), Positives = 114/280 (40%), Gaps = 49/280 (17%)

Query: 8   TGHEDTVHDVAMDFYGKRLATASSDSSIKIIGLSNSASQHLATLKGHRGPVWQVAWAHPK 67
            GH   V  VA    GK LAT S D +IK+  L     + L TLKGH GPV  VA +   
Sbjct: 6   KGHTGGVTCVAFSPDGKLLATGSGDGTIKVWDLET--GELLRTLKGHTGPVRDVAASA-- 61

Query: 68  FGSILASCSYDGQVIIWKEGNQNDWTQAHTFNDHKSSVNSIAWAPHELGLSLACGSSDGN 127
            G+ LAS S D  + +W            T   H S V+S+A++P   G  L+  S D  
Sbjct: 62  DGTYLASGSSDKTIRLWDLETGE---CVRTLTGHTSYVSSVAFSPD--GRILSSSSRDKT 116

Query: 128 ISVFTATADGGWDTTRID-----QAHPVGVTSVSWAPAMAPGALVGLGLLDPVQKLASCG 182
           I V        WD          + H   V SV++                P     +  
Sbjct: 117 IKV--------WDVETGKCLTTLRGHTDWVNSVAF---------------SPDGTFVASS 153

Query: 183 C-DNTVKVWKMYNGIWKMDCFPALQMHSDWVRSVAWAPNLGLPKSTIASASQDGTVVIWT 241
             D T+K+W +  G     C   L  H+  V SVA++P+       + S+S DGT+ +W 
Sbjct: 154 SQDGTIKLWDLRTGK----CVATLTGHTGEVNSVAFSPD----GEKLLSSSSDGTIKLWD 205

Query: 242 CAKEGEQWEGRVLKDFKTPVWSVSWSLTGNLLAVADANNV 281
            +          L+  +  V SV++S  G LLA    +  
Sbjct: 206 LST---GKCLGTLRGHENGVNSVAFSPDGYLLASGSEDGT 242

Length = 289

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score =  107 bits (270), Expect = 2e-27
 Identities = 70/240 (29%), Positives = 107/240 (44%), Gaps = 38/240 (15%)

Query: 47  HLATLKGHRGPVWQVAWAHPKFGSILASCSYDGQVIIWKEGNQNDWTQAHTFNDHKSSVN 106
              TLKGH G V  VA+  P  G +LA+ S DG + +W   +        T   H   V 
Sbjct: 1   LRRTLKGHTGGVTCVAF-SPD-GKLLATGSGDGTIKVW---DLETGELLRTLKGHTGPVR 55

Query: 107 SIAWAPHELGLSLACGSSDGNISVFTATADGGWDTTRIDQAHPVGVTSVSWAPAMAPGAL 166
            +A +    G  LA GSSD  I ++        +  R    H   V+SV+++P       
Sbjct: 56  DVAASAD--GTYLASGSSDKTIRLWDLETG---ECVRTLTGHTSYVSSVAFSPDG----- 105

Query: 167 VGLGLLDPVQKLASCGCDNTVKVWKMYNGIWKMDCFPALQMHSDWVRSVAWAPNLGLPKS 226
                    + L+S   D T+KVW +  G     C   L+ H+DWV SVA++P+     +
Sbjct: 106 ---------RILSSSSRDKTIKVWDVETG----KCLTTLRGHTDWVNSVAFSPD----GT 148

Query: 227 TIASASQDGTVVIWTCAKEGEQWEG-RVLKDFKTPVWSVSWSLTGNLLAVADANN-VTLW 284
            +AS+SQDGT+ +W    +    +    L      V SV++S  G  L  + ++  + LW
Sbjct: 149 FVASSSQDGTIKLW----DLRTGKCVATLTGHTGEVNSVAFSPDGEKLLSSSSDGTIKLW 204

Length = 289

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score =  106 bits (264), Expect = 6e-26
 Identities = 76/280 (27%), Positives = 115/280 (41%), Gaps = 31/280 (11%)

Query: 8   TGHEDTVHDVAMDFYGKRLATASSDSSIKIIGLSNSASQHLATLKGHRGPVWQVAWAHPK 67
            GHED++  +A    G+ L + SSD +IK+  L N      +    H   V ++A + P 
Sbjct: 62  RGHEDSITSIAFSPDGELLLSGSSDGTIKLWDLDNGEKLIKSLEGLHDSSVSKLALSSPD 121

Query: 68  FGSILASCSY-DGQVIIWKEGNQNDWTQAHTFNDHKSSVNSIAWAPHELGLSLACGSSDG 126
             SIL + S  DG V +W            T   H  SV S+A++P    L  +  S DG
Sbjct: 122 GNSILLASSSLDGTVKLWDL--STPGKLIRTLEGHSESVTSLAFSPDGKLL-ASGSSLDG 178

Query: 127 NISVFTATADGGWDTTRIDQAHPVGVTSVSWAPAMAPGALVGLGLLDPVQKLASCGCDNT 186
            I ++                H   V+S++++P             D    +AS   D T
Sbjct: 179 TIKLW---DLRTGKPLSTLAGHTDPVSSLAFSP-------------DGGLLIASGSSDGT 222

Query: 187 VKVWKMYNGIWKMDCFPALQMHSDWVRSVAWAPNLGLPKSTIASASQDGTVVIWTCAKEG 246
           +++W +  G            HSD V S +++P+     S +AS S DGT+ +W      
Sbjct: 223 IRLWDLSTGKLLRSTLSG---HSDSVVS-SFSPD----GSLLASGSSDGTIRLWDLRSSS 274

Query: 247 EQWEGRVLKDFKTPVWSVSWSLTGNLLAVA-DANNVTLWK 285
                R L    + V SV++S  G LLA       V LW 
Sbjct: 275 SLL--RTLSGHSSSVLSVAFSPDGKLLASGSSDGTVRLWD 312

Length = 466

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score = 95.2 bits (235), Expect = 5e-22
 Identities = 77/287 (26%), Positives = 129/287 (44%), Gaps = 36/287 (12%)

Query: 4   QKIETGHEDTVHDVAM-DFYGKRLATASS--DSSIKIIGLSNSASQHLATLKGHRGPVWQ 60
           + +E  H+ +V  +A+    G  +  ASS  D ++K+  LS    + + TL+GH   V  
Sbjct: 102 KSLEGLHDSSVSKLALSSPDGNSILLASSSLDGTVKLWDLSTP-GKLIRTLEGHSESVTS 160

Query: 61  VAWAHPKFGSILASCSYDGQVIIWKEGNQNDWTQAHTFNDHKSSVNSIAWAPHELGLSLA 120
           +A+  P    + +  S DG + +W   +        T   H   V+S+A++P + GL +A
Sbjct: 161 LAF-SPDGKLLASGSSLDGTIKLW---DLRTGKPLSTLAGHTDPVSSLAFSP-DGGLLIA 215

Query: 121 CGSSDGNISVFTATADGGWDTTRIDQAHPVGVTSVSWAPAMAPGALVGLGLLDPVQKLAS 180
            GSSDG I ++   + G    + +       V+S S                     LAS
Sbjct: 216 SGSSDGTIRLWD-LSTGKLLRSTLSGHSDSVVSSFSPDG----------------SLLAS 258

Query: 181 CGCDNTVKVWKMYNGIWKMDCFPALQMHSDWVRSVAWAPNLGLPKSTIASASQDGTVVIW 240
              D T+++W + +          L  HS  V SVA++P+       +AS S DGTV +W
Sbjct: 259 GSSDGTIRLWDLRSS---SSLLRTLSGHSSSVLSVAFSPD----GKLLASGSSDGTVRLW 311

Query: 241 TCAKEGEQWEGRVLKDFKTPVWSVSWSLTGNLLAVADANN--VTLWK 285
              + G+      LK  + PV S+S+S  G+LL    +++  + LW 
Sbjct: 312 -DLETGKLLSSLTLKGHEGPVSSLSFSPDGSLLVSGGSDDGTIRLWD 357

Length = 466

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score = 79.7 bits (195), Expect = 9e-17
 Identities = 65/232 (28%), Positives = 101/232 (43%), Gaps = 32/232 (13%)

Query: 9   GHEDTVHDVAMDFYGKRLATASSDSSIKIIGLSNSASQHLATLKGHRGPVWQVAWAHPKF 68
           GH D+V   +    G  LA+ SSD +I++  L +S S  L TL GH   V  VA+     
Sbjct: 240 GHSDSV-VSSFSPDGSLLASGSSDGTIRLWDLRSS-SSLLRTLSGHSSSVLSVAF--SPD 295

Query: 69  GSILASCSYDGQVIIWKEGNQNDWTQAHTFNDHKSSVNSIAWAPHELGLSLACGSSDGNI 128
           G +LAS S DG V +W          + T   H+  V+S++++P    L    GS DG I
Sbjct: 296 GKLLASGSSDGTVRLWDL-ETGKLLSSLTLKGHEGPVSSLSFSPDGSLLVSG-GSDDGTI 353

Query: 129 SVFTATADGGWDTTRIDQAHPVGVTSVSWAPAMAPGALVGLGLLDPVQKLASCGCDNTVK 188
            ++    D               V SVS++P                + ++S   D TV+
Sbjct: 354 RLW----DLRTGKPLKTLEGHSNVLSVSFSP--------------DGRVVSSGSTDGTVR 395

Query: 189 VWKMYNGIWKMDCFPALQMHSDWVRSVAWAPNLGLPKSTIASASQDGTVVIW 240
           +W +  G         L  H+  V S+ ++P+      ++AS S D T+ +W
Sbjct: 396 LWDLSTG----SLLRNLDGHTSRVTSLDFSPD----GKSLASGSSDNTIRLW 439

Length = 466

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score = 64.0 bits (154), Expect = 2e-11
 Identities = 48/194 (24%), Positives = 86/194 (44%), Gaps = 26/194 (13%)

Query: 8   TGHEDTVHDVAMDFYGKRLATASSDSSIKIIGLSNSASQHLATLKGHRGPVWQVAWAHPK 67
           +GH  +V  VA    GK LA+ SSD ++++  L         TLKGH GPV  +++  P 
Sbjct: 281 SGHSSSVLSVAFSPDGKLLASGSSDGTVRLWDLETGKLLSSLTLKGHEGPVSSLSF-SPD 339

Query: 68  FGSILASCSYDGQVIIWKEGNQNDWTQAHTFNDHKSSVNSIAWAPHELGLSLACGSSDGN 127
              +++  S DG + +W         +     +  S+V S++++P   G  ++ GS+DG 
Sbjct: 340 GSLLVSGGSDDGTIRLWDL----RTGKPLKTLEGHSNVLSVSFSPD--GRVVSSGSTDGT 393

Query: 128 ISVFTATADGGWDTTRIDQAHPV-GVTSVSWAPAMAPGALVGLGLLDPVQKLASCGCDNT 186
           + +        WD +       + G TS   +   +P            + LAS   DNT
Sbjct: 394 VRL--------WDLSTGSLLRNLDGHTSRVTSLDFSPDG----------KSLASGSSDNT 435

Query: 187 VKVWKMYNGIWKMD 200
           +++W +   +  + 
Sbjct: 436 IRLWDLKTSLKSVS 449

Length = 466

>gnl|CDD|197651 smart00320, WD40, WD40 repeats

 Score = 42.7 bits (101), Expect = 4e-06
 Identities = 19/40 (47%), Positives = 24/40 (60%), Gaps = 2/40 (5%)

Query: 46 QHLATLKGHRGPVWQVAWAHPKFGSILASCSYDGQVIIWK 85
          + L TLKGH GPV  VA++    G  LAS S DG + +W 
Sbjct: 3  ELLKTLKGHTGPVTSVAFSP--DGKYLASGSDDGTIKLWD 40

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. Length = 40

>gnl|CDD|201208 pfam00400, WD40, WD domain, G-beta repeat

 Score = 41.6 bits (98), Expect = 9e-06
 Identities = 21/40 (52%), Positives = 26/40 (65%), Gaps = 2/40 (5%)

Query: 46 QHLATLKGHRGPVWQVAWAHPKFGSILASCSYDGQVIIWK 85
          + L TLKGH GPV  VA+  P  G++LAS S DG V +W 
Sbjct: 2  KLLRTLKGHTGPVTSVAF-SPD-GNLLASGSDDGTVRVWD 39

Length = 39

>gnl|CDD|173611 PTZ00421, PTZ00421, coronin; Provisional

 Score = 46.0 bits (109), Expect = 1e-05
 Identities = 37/129 (28%), Positives = 55/129 (42%), Gaps = 13/129 (10%)

Query: 2   PAQKIETGHEDTVHDVAMD-FYGKRLATASSDSSI-----KIIGLSNSASQHLATLKGHR 55
               I  G E  + DVA + F  ++L TAS D +I        GL+ + S  +  L+GH 
Sbjct: 66  SNPPILLGQEGPIIDVAFNPFDPQKLFTASEDGTIMGWGIPEEGLTQNISDPIVHLQGHT 125

Query: 56  GPVWQVAWAHPKFGSILASCSYDGQVIIWKEGNQNDWTQAHTFNDHKSSVNSIAWAPHEL 115
             V  V++ HP   ++LAS   D  V +W   +            H   + S+ W    L
Sbjct: 126 KKVGIVSF-HPSAMNVLASAGADMVVNVW---DVERGKAVEVIKCHSDQITSLEW---NL 178

Query: 116 GLSLACGSS 124
             SL C +S
Sbjct: 179 DGSLLCTTS 187

Length = 493

>gnl|CDD|201208 pfam00400, WD40, WD domain, G-beta repeat

 Score = 38.1 bits (89), Expect = 2e-04
 Identities = 15/36 (41%), Positives = 23/36 (63%), Gaps = 4/36 (11%)

Query: 205 LQMHSDWVRSVAWAPNLGLPKSTIASASQDGTVVIW 240
           L+ H+  V SVA++P+     + +AS S DGTV +W
Sbjct: 7   LKGHTGPVTSVAFSPD----GNLLASGSDDGTVRVW 38

Length = 39

>gnl|CDD|197651 smart00320, WD40, WD40 repeats

 Score = 37.3 bits (87), Expect = 3e-04
 Identities = 14/36 (38%), Positives = 22/36 (61%), Gaps = 4/36 (11%)

Query: 205 LQMHSDWVRSVAWAPNLGLPKSTIASASQDGTVVIW 240
           L+ H+  V SVA++P+       +AS S DGT+ +W
Sbjct: 8   LKGHTGPVTSVAFSPD----GKYLASGSDDGTIKLW 39

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. Length = 40

>gnl|CDD|197651 smart00320, WD40, WD40 repeats

 Score = 36.1 bits (84), Expect = 0.001
 Identities = 14/41 (34%), Positives = 19/41 (46%), Gaps = 2/41 (4%)

Query: 91  DWTQAHTFNDHKSSVNSIAWAPHELGLSLACGSSDGNISVF 131
                 T   H   V S+A++P   G  LA GS DG I ++
Sbjct: 1   SGELLKTLKGHTGPVTSVAFSPD--GKYLASGSDDGTIKLW 39

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. Length = 40

>gnl|CDD|201208 pfam00400, WD40, WD domain, G-beta repeat

 Score = 35.8 bits (83), Expect = 0.001
 Identities = 14/40 (35%), Positives = 19/40 (47%), Gaps = 2/40 (5%)

Query: 92  WTQAHTFNDHKSSVNSIAWAPHELGLSLACGSSDGNISVF 131
                T   H   V S+A++P   G  LA GS DG + V+
Sbjct: 1   GKLLRTLKGHTGPVTSVAFSPD--GNLLASGSDDGTVRVW 38

Length = 39

>gnl|CDD|240412 PTZ00420, PTZ00420, coronin; Provisional

 Score = 39.5 bits (92), Expect = 0.002
 Identities = 42/161 (26%), Positives = 67/161 (41%), Gaps = 33/161 (20%)

Query: 51  LKGHRGPVWQVAWAHPKFGSILASCSYDGQVIIWKEGNQNDWTQAHT------FNDHKSS 104
           LKGH   +  + + +P F  ILAS S D  + +W E   ND +             HK  
Sbjct: 70  LKGHTSSILDLQF-NPCFSEILASGSEDLTIRVW-EIPHNDESVKEIKDPQCILKGHKKK 127

Query: 105 VNSIAWAPHELGLSLACGSS-DGNISVFTATADGGWDTTRIDQAH----PVGVTSVSW-- 157
           ++ I W P  +   + C S  D  +++        WD     +A     P  ++S+ W  
Sbjct: 128 ISIIDWNP--MNYYIMCSSGFDSFVNI--------WDIENEKRAFQINMPKKLSSLKWNI 177

Query: 158 APAMAPGALVG--LGLLDP-VQKLASC-----GCDNTVKVW 190
              +  G  VG  + ++DP  Q++AS      G  NT  +W
Sbjct: 178 KGNLLSGTCVGKHMHIIDPRKQEIASSFHIHDGGKNTKNIW 218

Length = 568

>gnl|CDD|201208 pfam00400, WD40, WD domain, G-beta repeat

 Score = 34.3 bits (79), Expect = 0.004
 Identities = 10/30 (33%), Positives = 15/30 (50%)

Query: 8  TGHEDTVHDVAMDFYGKRLATASSDSSIKI 37
           GH   V  VA    G  LA+ S D ++++
Sbjct: 8  KGHTGPVTSVAFSPDGNLLASGSDDGTVRV 37

Length = 39

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	302
KOG1332	299	consensus Vesicle coat complex COPII, subunit SEC1	100.0
KOG0271	480	consensus Notchless-like WD40 repeat-containing pr	100.0
KOG0272	459	consensus U4/U6 small nuclear ribonucleoprotein Pr	100.0
KOG0272	459	consensus U4/U6 small nuclear ribonucleoprotein Pr	100.0
KOG0271	480	consensus Notchless-like WD40 repeat-containing pr	100.0
KOG0645	312	consensus WD40 repeat protein [General function pr	100.0
KOG0279	315	consensus G protein beta subunit-like protein [Sig	100.0
KOG0263	707	consensus Transcription initiation factor TFIID, s	100.0
KOG0279	315	consensus G protein beta subunit-like protein [Sig	100.0
KOG0286	343	consensus G-protein beta subunit [General function	100.0
KOG0263	707	consensus Transcription initiation factor TFIID, s	100.0
KOG0315	311	consensus G-protein beta subunit-like protein (con	100.0
KOG0273	524	consensus Beta-transducin family (WD-40 repeat) pr	100.0
KOG0645	312	consensus WD40 repeat protein [General function pr	100.0
KOG0265	338	consensus U5 snRNP-specific protein-like factor an	100.0
KOG0295	406	consensus WD40 repeat-containing protein [Function	100.0
KOG2445	361	consensus Nuclear pore complex component (sc Seh1)	100.0
KOG0284	464	consensus Polyadenylation factor I complex, subuni	100.0
KOG0284	464	consensus Polyadenylation factor I complex, subuni	100.0
KOG0295	406	consensus WD40 repeat-containing protein [Function	100.0
KOG0281	499	consensus Beta-TrCP (transducin repeats containing	100.0
KOG0292	1202	consensus Vesicle coat complex COPI, alpha subunit	100.0
KOG0319	775	consensus WD40-repeat-containing subunit of the 18	100.0
KOG0285	460	consensus Pleiotropic regulator 1 [RNA processing	100.0
KOG0286	343	consensus G-protein beta subunit [General function	100.0
KOG0266	456	consensus WD40 repeat-containing protein [General	100.0
KOG0318	603	consensus WD40 repeat stress protein/actin interac	100.0
KOG0273	524	consensus Beta-transducin family (WD-40 repeat) pr	100.0
KOG0313	423	consensus Microtubule binding protein YTM1 (contai	100.0
KOG0266	456	consensus WD40 repeat-containing protein [General	100.0
KOG0281	499	consensus Beta-TrCP (transducin repeats containing	100.0
KOG0291	893	consensus WD40-repeat-containing subunit of the 18	100.0
KOG0277	311	consensus Peroxisomal targeting signal type 2 rece	100.0
KOG0276	794	consensus Vesicle coat complex COPI, beta' subunit	100.0
KOG0264	422	consensus Nucleosome remodeling factor, subunit CA	100.0
PLN00181	793	protein SPA1-RELATED; Provisional	100.0
KOG0316	307	consensus Conserved WD40 repeat-containing protein	99.98
KOG0293	519	consensus WD40 repeat-containing protein [Function	99.98
KOG0268	433	consensus Sof1-like rRNA processing protein (conta	99.98
cd00200	289	WD40 WD40 domain, found in a number of eukaryotic	99.98
KOG0283	712	consensus WD40 repeat-containing protein [Function	99.98
KOG0292	1202	consensus Vesicle coat complex COPI, alpha subunit	99.98
KOG0310	487	consensus Conserved WD40 repeat-containing protein	99.98
PLN00181	793	protein SPA1-RELATED; Provisional	99.97
KOG0276	794	consensus Vesicle coat complex COPI, beta' subunit	99.97
KOG0643	327	consensus Translation initiation factor 3, subunit	99.97
KOG0291	893	consensus WD40-repeat-containing subunit of the 18	99.97
KOG0282	503	consensus mRNA splicing factor [Function unknown]	99.97
KOG0313	423	consensus Microtubule binding protein YTM1 (contai	99.97
cd00200	289	WD40 WD40 domain, found in a number of eukaryotic	99.97
KOG0315	311	consensus G-protein beta subunit-like protein (con	99.97
KOG0316	307	consensus Conserved WD40 repeat-containing protein	99.97
KOG0319	775	consensus WD40-repeat-containing subunit of the 18	99.97
PTZ00421	493	coronin; Provisional	99.97
KOG0264	422	consensus Nucleosome remodeling factor, subunit CA	99.97
PTZ00421	493	coronin; Provisional	99.97
KOG0318	603	consensus WD40 repeat stress protein/actin interac	99.97
PTZ00420	568	coronin; Provisional	99.97
KOG0278	334	consensus Serine/threonine kinase receptor-associa	99.97
KOG0277	311	consensus Peroxisomal targeting signal type 2 rece	99.97
KOG0265	338	consensus U5 snRNP-specific protein-like factor an	99.97
KOG0296	399	consensus Angio-associated migratory cell protein	99.97
KOG0647	347	consensus mRNA export protein (contains WD40 repea	99.96
KOG1407	313	consensus WD40 repeat protein [Function unknown]	99.96
KOG0300	481	consensus WD40 repeat-containing protein [Function	99.96
KOG0285	460	consensus Pleiotropic regulator 1 [RNA processing	99.96
KOG0305	484	consensus Anaphase promoting complex, Cdc20, Cdh1,	99.96
KOG0640	430	consensus mRNA cleavage stimulating factor complex	99.96
KOG0306	888	consensus WD40-repeat-containing subunit of the 18	99.96
PTZ00420	568	coronin; Provisional	99.96
KOG0299	479	consensus U3 snoRNP-associated protein (contains W	99.96
KOG0289	506	consensus mRNA splicing factor [General function p	99.96
KOG0973	942	consensus Histone transcription regulator HIRA, WD	99.95
KOG0294	362	consensus WD40 repeat-containing protein [Function	99.95
KOG0772	641	consensus Uncharacterized conserved protein, conta	99.95
KOG1446	311	consensus Histone H3 (Lys4) methyltransferase comp	99.95
KOG0274	537	consensus Cdc4 and related F-box and WD-40 protein	99.95
KOG0274	537	consensus Cdc4 and related F-box and WD-40 protein	99.95
KOG0308	735	consensus Conserved WD40 repeat-containing protein	99.95
KOG1332	299	consensus Vesicle coat complex COPII, subunit SEC1	99.95
KOG0301	745	consensus Phospholipase A2-activating protein (con	99.95
KOG0302	440	consensus Ribosome Assembly protein [General funct	99.95
KOG0641	350	consensus WD40 repeat protein [General function pr	99.95
KOG0302	440	consensus Ribosome Assembly protein [General funct	99.95
KOG1036	323	consensus Mitotic spindle checkpoint protein BUB3,	99.95
KOG0288	459	consensus WD40 repeat protein TipD [General functi	99.94
KOG0275	508	consensus Conserved WD40 repeat-containing protein	99.94
KOG0301	745	consensus Phospholipase A2-activating protein (con	99.94
KOG0282	503	consensus mRNA splicing factor [Function unknown]	99.94
KOG0267	825	consensus Microtubule severing protein katanin p80	99.94
KOG0299	479	consensus U3 snoRNP-associated protein (contains W	99.94
KOG0640	430	consensus mRNA cleavage stimulating factor complex	99.94
KOG0293	519	consensus WD40 repeat-containing protein [Function	99.94
KOG0306	888	consensus WD40-repeat-containing subunit of the 18	99.93
KOG0283	712	consensus WD40 repeat-containing protein [Function	99.93
KOG0278	334	consensus Serine/threonine kinase receptor-associa	99.93
KOG0269	839	consensus WD40 repeat-containing protein [Function	99.93
KOG0270	463	consensus WD40 repeat-containing protein [Function	99.93
KOG0641	350	consensus WD40 repeat protein [General function pr	99.93
KOG0289	506	consensus mRNA splicing factor [General function p	99.93
KOG0310	487	consensus Conserved WD40 repeat-containing protein	99.93
KOG0269	839	consensus WD40 repeat-containing protein [Function	99.93
KOG0296	399	consensus Angio-associated migratory cell protein	99.92
KOG2096	420	consensus WD40 repeat protein [General function pr	99.92
KOG1063	764	consensus RNA polymerase II elongator complex, sub	99.92
KOG0646	476	consensus WD40 repeat protein [General function pr	99.92
KOG0305	484	consensus Anaphase promoting complex, Cdc20, Cdh1,	99.92
KOG1274	933	consensus WD40 repeat protein [General function pr	99.92
KOG0772	641	consensus Uncharacterized conserved protein, conta	99.92
KOG0643	327	consensus Translation initiation factor 3, subunit	99.92
KOG1407	313	consensus WD40 repeat protein [Function unknown]	99.92
KOG0308	735	consensus Conserved WD40 repeat-containing protein	99.92
KOG0300	481	consensus WD40 repeat-containing protein [Function	99.91
KOG0973	942	consensus Histone transcription regulator HIRA, WD	99.91
KOG0275	508	consensus Conserved WD40 repeat-containing protein	99.91
KOG4283	397	consensus Transcription-coupled repair protein CSA	99.9
KOG1408	1080	consensus WD40 repeat protein [Function unknown]	99.9
KOG4283	397	consensus Transcription-coupled repair protein CSA	99.9
KOG2445	361	consensus Nuclear pore complex component (sc Seh1)	99.89
KOG0639	705	consensus Transducin-like enhancer of split protei	99.89
KOG4328	498	consensus WD40 protein [Function unknown]	99.89
KOG0270	463	consensus WD40 repeat-containing protein [Function	99.88
KOG1063	764	consensus RNA polymerase II elongator complex, sub	99.88
KOG0290	364	consensus Conserved WD40 repeat-containing protein	99.87
KOG0288	459	consensus WD40 repeat protein TipD [General functi	99.87
KOG1034	385	consensus Transcriptional repressor EED/ESC/FIE, r	99.87
KOG0321	720	consensus WD40 repeat-containing protein L2DTL [Fu	99.87
KOG0267	825	consensus Microtubule severing protein katanin p80	99.87
KOG0268	433	consensus Sof1-like rRNA processing protein (conta	99.87
KOG1539	910	consensus WD repeat protein [General function pred	99.87
KOG2096	420	consensus WD40 repeat protein [General function pr	99.86
KOG1007	370	consensus WD repeat protein TSSC1, WD repeat super	99.86
KOG1523	361	consensus Actin-related protein Arp2/3 complex, su	99.86
KOG1408	1080	consensus WD40 repeat protein [Function unknown]	99.86
KOG2106	626	consensus Uncharacterized conserved protein, conta	99.86
KOG0647	347	consensus mRNA export protein (contains WD40 repea	99.86
KOG0639	705	consensus Transducin-like enhancer of split protei	99.85
KOG2055	514	consensus WD40 repeat protein [General function pr	99.85
KOG0294	362	consensus WD40 repeat-containing protein [Function	99.85
TIGR03866	300	PQQ_ABC_repeats PQQ-dependent catabolism-associate	99.85
KOG2048	691	consensus WD40 repeat protein [General function pr	99.85
KOG1446	311	consensus Histone H3 (Lys4) methyltransferase comp	99.85
KOG0307	1049	consensus Vesicle coat complex COPII, subunit SEC3	99.85
KOG1273	405	consensus WD40 repeat protein [General function pr	99.84
KOG4378	673	consensus Nuclear protein COP1 [Signal transductio	99.84
KOG1007	370	consensus WD repeat protein TSSC1, WD repeat super	99.84
KOG4328	498	consensus WD40 protein [Function unknown]	99.84
KOG1009	434	consensus Chromatin assembly complex 1 subunit B/C	99.83
KOG1274	933	consensus WD40 repeat protein [General function pr	99.82
KOG2919	406	consensus Guanine nucleotide-binding protein [Gene	99.82
KOG1036	323	consensus Mitotic spindle checkpoint protein BUB3,	99.82
KOG1587	555	consensus Cytoplasmic dynein intermediate chain [C	99.82
KOG1538	1081	consensus Uncharacterized conserved protein WDR10,	99.82
KOG2106	626	consensus Uncharacterized conserved protein, conta	99.82
KOG0650	733	consensus WD40 repeat nucleolar protein Bop1, invo	99.82
KOG4378	673	consensus Nuclear protein COP1 [Signal transductio	99.82
KOG1524	737	consensus WD40 repeat-containing protein CHE-2 [Ge	99.81
KOG0646	476	consensus WD40 repeat protein [General function pr	99.81
KOG2048	691	consensus WD40 repeat protein [General function pr	99.8
KOG0307	1049	consensus Vesicle coat complex COPII, subunit SEC3	99.8
KOG1523	361	consensus Actin-related protein Arp2/3 complex, su	99.8
KOG0321	720	consensus WD40 repeat-containing protein L2DTL [Fu	99.8
KOG2919	406	consensus Guanine nucleotide-binding protein [Gene	99.79
KOG0642	577	consensus Cell-cycle nuclear protein, contains WD-	99.79
KOG0303	472	consensus Actin-binding protein Coronin, contains	99.79
KOG0644	1113	consensus Uncharacterized conserved protein, conta	99.79
KOG1034	385	consensus Transcriptional repressor EED/ESC/FIE, r	99.78
COG2319	466	FOG: WD40 repeat [General function prediction only	99.78
KOG1539	910	consensus WD repeat protein [General function pred	99.78
KOG0322	323	consensus G-protein beta subunit-like protein GNB1	99.77
KOG4227	609	consensus WD40 repeat protein [General function pr	99.77
TIGR03866	300	PQQ_ABC_repeats PQQ-dependent catabolism-associate	99.77
KOG1273	405	consensus WD40 repeat protein [General function pr	99.76
PRK11028	330	6-phosphogluconolactonase; Provisional	99.76
KOG1188	376	consensus WD40 repeat protein [General function pr	99.75
KOG0290	364	consensus Conserved WD40 repeat-containing protein	99.74
KOG1310	758	consensus WD40 repeat protein [General function pr	99.73
COG2319	466	FOG: WD40 repeat [General function prediction only	99.73
KOG0303	472	consensus Actin-binding protein Coronin, contains	99.72
KOG1009	434	consensus Chromatin assembly complex 1 subunit B/C	99.71
KOG0642	577	consensus Cell-cycle nuclear protein, contains WD-	99.7
KOG1188	376	consensus WD40 repeat protein [General function pr	99.7
KOG0649	325	consensus WD40 repeat protein [General function pr	99.69
KOG1517	1387	consensus Guanine nucleotide binding protein MIP1	99.69
KOG1963	792	consensus WD40 repeat protein [General function pr	99.69
KOG2110	391	consensus Uncharacterized conserved protein, conta	99.68
KOG1445	1012	consensus Tumor-specific antigen (contains WD repe	99.68
PRK01742	429	tolB translocation protein TolB; Provisional	99.67
KOG0771	398	consensus Prolactin regulatory element-binding pro	99.67
KOG1334	559	consensus WD40 repeat protein [General function pr	99.67
KOG1445	1012	consensus Tumor-specific antigen (contains WD repe	99.66
KOG1587	555	consensus Cytoplasmic dynein intermediate chain [C	99.66
KOG0649	325	consensus WD40 repeat protein [General function pr	99.66
KOG0771	398	consensus Prolactin regulatory element-binding pro	99.66
KOG1538	1081	consensus Uncharacterized conserved protein WDR10,	99.65
KOG1310	758	consensus WD40 repeat protein [General function pr	99.64
KOG1524	737	consensus WD40 repeat-containing protein CHE-2 [Ge	99.63
PRK11028	330	6-phosphogluconolactonase; Provisional	99.63
PRK01742	429	tolB translocation protein TolB; Provisional	99.62
KOG1517	1387	consensus Guanine nucleotide binding protein MIP1	99.61
KOG0650	733	consensus WD40 repeat nucleolar protein Bop1, invo	99.61
KOG2055	514	consensus WD40 repeat protein [General function pr	99.6
KOG1963	792	consensus WD40 repeat protein [General function pr	99.58
KOG2111	346	consensus Uncharacterized conserved protein, conta	99.58
KOG2139	445	consensus WD40 repeat protein [General function pr	99.53
KOG2394	636	consensus WD40 protein DMR-N9 [General function pr	99.52
KOG1240	1431	consensus Protein kinase containing WD40 repeats [	99.5
KOG0644	1113	consensus Uncharacterized conserved protein, conta	99.5
KOG4227	609	consensus WD40 repeat protein [General function pr	99.48
KOG2111	346	consensus Uncharacterized conserved protein, conta	99.47
KOG1272	545	consensus WD40-repeat-containing subunit of the 18	99.46
KOG0322	323	consensus G-protein beta subunit-like protein GNB1	99.46
PRK03629	429	tolB translocation protein TolB; Provisional	99.45
PF10282	345	Lactonase: Lactonase, 7-bladed beta-propeller; Int	99.44
PRK05137	435	tolB translocation protein TolB; Provisional	99.44
PF08662	194	eIF2A: Eukaryotic translation initiation factor eI	99.43
PRK02889	427	tolB translocation protein TolB; Provisional	99.43
KOG1354	433	consensus Serine/threonine protein phosphatase 2A,	99.43
KOG2394	636	consensus WD40 protein DMR-N9 [General function pr	99.41
KOG1334	559	consensus WD40 repeat protein [General function pr	99.39
KOG3881	412	consensus Uncharacterized conserved protein [Funct	99.38
PRK02889	427	tolB translocation protein TolB; Provisional	99.38
KOG2110	391	consensus Uncharacterized conserved protein, conta	99.37
PF08662	194	eIF2A: Eukaryotic translation initiation factor eI	99.37
PRK03629	429	tolB translocation protein TolB; Provisional	99.37
PRK04922	433	tolB translocation protein TolB; Provisional	99.35
PRK05137	435	tolB translocation protein TolB; Provisional	99.35
PRK04922	433	tolB translocation protein TolB; Provisional	99.33
KOG0974	967	consensus WD-repeat protein WDR6, WD repeat superf	99.31
KOG3881	412	consensus Uncharacterized conserved protein [Funct	99.3
KOG0280	339	consensus Uncharacterized conserved protein [Amino	99.3
KOG2139	445	consensus WD40 repeat protein [General function pr	99.29
KOG2321	703	consensus WD40 repeat protein [General function pr	99.25
KOG1272	545	consensus WD40-repeat-containing subunit of the 18	99.25
KOG0280	339	consensus Uncharacterized conserved protein [Amino	99.24
KOG4497	447	consensus Uncharacterized conserved protein WDR8,	99.23
COG5170	460	CDC55 Serine/threonine protein phosphatase 2A, reg	99.22
KOG1240	1431	consensus Protein kinase containing WD40 repeats [	99.21
TIGR02800	417	propeller_TolB tol-pal system beta propeller repea	99.2
TIGR02800	417	propeller_TolB tol-pal system beta propeller repea	99.19
KOG1064	2439	consensus RAVE (regulator of V-ATPase assembly) co	99.17
KOG4497	447	consensus Uncharacterized conserved protein WDR8,	99.16
KOG1354	433	consensus Serine/threonine protein phosphatase 2A,	99.16
COG2706	346	3-carboxymuconate cyclase [Carbohydrate transport	99.15
KOG0974	967	consensus WD-repeat protein WDR6, WD repeat superf	99.15
PRK00178	430	tolB translocation protein TolB; Provisional	99.14
KOG2321	703	consensus WD40 repeat protein [General function pr	99.13
KOG1409	404	consensus Uncharacterized conserved protein, conta	99.1
KOG4532	344	consensus WD40-like repeat containing protein [Gen	99.09
PRK01029	428	tolB translocation protein TolB; Provisional	99.09
PF02239	369	Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO	99.07
PF10282	345	Lactonase: Lactonase, 7-bladed beta-propeller; Int	99.07
KOG1409	404	consensus Uncharacterized conserved protein, conta	99.07
PRK04792	448	tolB translocation protein TolB; Provisional	99.06
PRK00178	430	tolB translocation protein TolB; Provisional	99.05
KOG0309	1081	consensus Conserved WD40 repeat-containing protein	99.05
PRK04792	448	tolB translocation protein TolB; Provisional	99.04
COG2706	346	3-carboxymuconate cyclase [Carbohydrate transport	99.03
KOG4547	541	consensus WD40 repeat-containing protein [General	99.0
KOG4547	541	consensus WD40 repeat-containing protein [General	99.0
PRK01029	428	tolB translocation protein TolB; Provisional	98.98
KOG1064	2439	consensus RAVE (regulator of V-ATPase assembly) co	98.93
KOG2314	698	consensus Translation initiation factor 3, subunit	98.91
KOG0309	1081	consensus Conserved WD40 repeat-containing protein	98.91
KOG3914	390	consensus WD repeat protein WDR4 [Function unknown	98.87
PLN02919	1057	haloacid dehalogenase-like hydrolase family protei	98.85
KOG2041	1189	consensus WD40 repeat protein [General function pr	98.84
PF04762	928	IKI3: IKI3 family; InterPro: IPR006849 Members of	98.83
KOG3914	390	consensus WD repeat protein WDR4 [Function unknown	98.8
PF00400	39	WD40: WD domain, G-beta repeat; InterPro: IPR01978	98.79
KOG4190	1034	consensus Uncharacterized conserved protein [Funct	98.79
KOG4532	344	consensus WD40-like repeat containing protein [Gen	98.76
COG5170	460	CDC55 Serine/threonine protein phosphatase 2A, reg	98.72
PF00400	39	WD40: WD domain, G-beta repeat; InterPro: IPR01978	98.71
PF04762	928	IKI3: IKI3 family; InterPro: IPR006849 Members of	98.65
KOG0882	558	consensus Cyclophilin-related peptidyl-prolyl cis-	98.65
PF15492	282	Nbas_N: Neuroblastoma-amplified sequence, N termin	98.58
KOG2315	566	consensus Predicted translation initiation factor	98.58
COG5354	561	Uncharacterized protein, contains Trp-Asp (WD) rep	98.57
COG4946	668	Uncharacterized protein related to the periplasmic	98.56
TIGR02658	352	TTQ_MADH_Hv methylamine dehydrogenase heavy chain.	98.53
KOG2066	846	consensus Vacuolar assembly/sorting protein VPS41	98.52
KOG1832	1516	consensus HIV-1 Vpr-binding protein [Cell cycle co	98.49
KOG4190	1034	consensus Uncharacterized conserved protein [Funct	98.49
PF02239	369	Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO	98.48
KOG4714	319	consensus Nucleoporin [Nuclear structure]	98.45
KOG2695	425	consensus WD40 repeat protein [General function pr	98.45
PLN02919	1057	haloacid dehalogenase-like hydrolase family protei	98.44
KOG4714	319	consensus Nucleoporin [Nuclear structure]	98.41
KOG0882	558	consensus Cyclophilin-related peptidyl-prolyl cis-	98.38
PF15492	282	Nbas_N: Neuroblastoma-amplified sequence, N termin	98.37
KOG2314	698	consensus Translation initiation factor 3, subunit	98.34
PF11768	545	DUF3312: Protein of unknown function (DUF3312); In	98.33
COG5354	561	Uncharacterized protein, contains Trp-Asp (WD) rep	98.32
PRK04043	419	tolB translocation protein TolB; Provisional	98.29
KOG1275	1118	consensus PAB-dependent poly(A) ribonuclease, subu	98.29
KOG2041	1189	consensus WD40 repeat protein [General function pr	98.23
KOG2315	566	consensus Predicted translation initiation factor	98.23
COG4946	668	Uncharacterized protein related to the periplasmic	98.19
KOG1275	1118	consensus PAB-dependent poly(A) ribonuclease, subu	98.18
KOG1645	463	consensus RING-finger-containing E3 ubiquitin liga	98.17
KOG2695	425	consensus WD40 repeat protein [General function pr	98.17
PRK04043	419	tolB translocation protein TolB; Provisional	98.17
KOG2114	933	consensus Vacuolar assembly/sorting protein PEP5/V	98.13
KOG2066	846	consensus Vacuolar assembly/sorting protein VPS41	98.12
KOG1645	463	consensus RING-finger-containing E3 ubiquitin liga	98.09
PF11768	545	DUF3312: Protein of unknown function (DUF3312); In	98.04
KOG1008	783	consensus Uncharacterized conserved protein, conta	97.93
KOG1920	1265	consensus IkappaB kinase complex, IKAP component [	97.87
KOG1008	783	consensus Uncharacterized conserved protein, conta	97.83
KOG1912	1062	consensus WD40 repeat protein [General function pr	97.79
KOG1912	1062	consensus WD40 repeat protein [General function pr	97.78
KOG1920	1265	consensus IkappaB kinase complex, IKAP component [	97.74
PF08450	246	SGL: SMP-30/Gluconolaconase/LRE-like region; Inter	97.71
KOG1832	1516	consensus HIV-1 Vpr-binding protein [Cell cycle co	97.7
TIGR03300	377	assembly_YfgL outer membrane assembly lipoprotein	97.7
PF08596	395	Lgl_C: Lethal giant larvae(Lgl) like, C-terminal;	97.67
KOG2114	933	consensus Vacuolar assembly/sorting protein PEP5/V	97.63
KOG3621	726	consensus WD40 repeat-containing protein [General	97.59
TIGR03300	377	assembly_YfgL outer membrane assembly lipoprotein	97.56
PF14783	111	BBS2_Mid: Ciliary BBSome complex subunit 2, middle	97.54
smart00320	40	WD40 WD40 repeats. Note that these repeats are per	97.52
KOG3617	1416	consensus WD40 and TPR repeat-containing protein [	97.45
KOG3621	726	consensus WD40 repeat-containing protein [General	97.43
smart00320	40	WD40 WD40 repeats. Note that these repeats are per	97.4
TIGR02658	352	TTQ_MADH_Hv methylamine dehydrogenase heavy chain.	97.08
PF14783	111	BBS2_Mid: Ciliary BBSome complex subunit 2, middle	97.02
PF07433	305	DUF1513: Protein of unknown function (DUF1513); In	96.95
PF13360	238	PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A	96.87
KOG4640	665	consensus Anaphase-promoting complex (APC), subuni	96.86
PF08553	794	VID27: VID27 cytoplasmic protein; InterPro: IPR013	96.76
PF08553	794	VID27: VID27 cytoplasmic protein; InterPro: IPR013	96.71
PHA02713	557	hypothetical protein; Provisional	96.61
KOG3617	1416	consensus WD40 and TPR repeat-containing protein [	96.56
KOG4640	665	consensus Anaphase-promoting complex (APC), subuni	96.55
PF07433	305	DUF1513: Protein of unknown function (DUF1513); In	96.53
PF04053	443	Coatomer_WDAD: Coatomer WD associated region ; Int	96.52
KOG4441	571	consensus Proteins containing BTB/POZ and Kelch do	96.5
PF08450	246	SGL: SMP-30/Gluconolaconase/LRE-like region; Inter	96.42
PF13360	238	PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A	96.31
PF06977	248	SdiA-regulated: SdiA-regulated; InterPro: IPR00972	96.23
PRK13616	591	lipoprotein LpqB; Provisional	96.18
PHA02713	557	hypothetical protein; Provisional	96.14
COG0823	425	TolB Periplasmic component of the Tol biopolymer t	95.86
PF04841	410	Vps16_N: Vps16, N-terminal region; InterPro: IPR00	95.7
PF12894	47	Apc4_WD40: Anaphase-promoting complex subunit 4 WD	95.63
PF03178	321	CPSF_A: CPSF A subunit region; InterPro: IPR004871	95.44
PF08596	395	Lgl_C: Lethal giant larvae(Lgl) like, C-terminal;	95.31
PF14870	302	PSII_BNR: Photosynthesis system II assembly factor	95.27
KOG4441	571	consensus Proteins containing BTB/POZ and Kelch do	94.93
PF12234	631	Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR0	94.91
PRK13616	591	lipoprotein LpqB; Provisional	94.88
KOG2079	1206	consensus Vacuolar assembly/sorting protein VPS8 [	94.86
PF12894	47	Apc4_WD40: Anaphase-promoting complex subunit 4 WD	94.73
PF04053	443	Coatomer_WDAD: Coatomer WD associated region ; Int	94.4
KOG2444	238	consensus WD40 repeat protein [General function pr	94.23
PF15390	671	DUF4613: Domain of unknown function (DUF4613)	93.88
PF03178	321	CPSF_A: CPSF A subunit region; InterPro: IPR004871	93.41
PF12234	631	Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR0	93.26
KOG2444	238	consensus WD40 repeat protein [General function pr	93.02
KOG2395	644	consensus Protein involved in vacuole import and d	93.01
PHA03098	534	kelch-like protein; Provisional	92.9
KOG2395	644	consensus Protein involved in vacuole import and d	92.88
KOG2079	1206	consensus Vacuolar assembly/sorting protein VPS8 [	92.66
PRK11138	394	outer membrane biogenesis protein BamB; Provisiona	92.28
PHA02790	480	Kelch-like protein; Provisional	92.12
PHA02790	480	Kelch-like protein; Provisional	92.09
PF10313	43	DUF2415: Uncharacterised protein domain (DUF2415);	91.85
PF10647	253	Gmad1: Lipoprotein LpqB beta-propeller domain; Int	91.8
PRK11138	394	outer membrane biogenesis protein BamB; Provisiona	91.78
PF10313	43	DUF2415: Uncharacterised protein domain (DUF2415);	91.54
COG0823	425	TolB Periplasmic component of the Tol biopolymer t	91.09
KOG3522	925	consensus Predicted guanine nucleotide exchange fa	90.96
PF10647	253	Gmad1: Lipoprotein LpqB beta-propeller domain; Int	90.89
PF00930	353	DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-termin	90.81
PHA03098	534	kelch-like protein; Provisional	90.63
KOG3630	1405	consensus Nuclear pore complex, Nup214/CAN compone	90.61
PF07569	219	Hira: TUP1-like enhancer of split; InterPro: IPR01	89.68
PF12657	173	TFIIIC_delta: Transcription factor IIIC subunit de	89.57
KOG1916	1283	consensus Nuclear protein, contains WD40 repeats [	89.41
PF15390	671	DUF4613: Domain of unknown function (DUF4613)	89.2
PF00780	275	CNH: CNH domain; InterPro: IPR001180 Based on sequ	89.19
KOG2377	657	consensus Uncharacterized conserved protein [Funct	87.96
PF05694	461	SBP56: 56kDa selenium binding protein (SBP56); Int	87.59
KOG3630	1405	consensus Nuclear pore complex, Nup214/CAN compone	87.28
KOG2377	657	consensus Uncharacterized conserved protein [Funct	85.96
PF08728	717	CRT10: CRT10; InterPro: IPR014839 CRT10 is a trans	85.69
COG3386	307	Gluconolactonase [Carbohydrate transport and metab	85.08
PF14870	302	PSII_BNR: Photosynthesis system II assembly factor	84.73
PF00930	353	DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-termin	84.01
PF08728	717	CRT10: CRT10; InterPro: IPR014839 CRT10 is a trans	83.93
PF00780	275	CNH: CNH domain; InterPro: IPR001180 Based on sequ	83.69
PF06977	248	SdiA-regulated: SdiA-regulated; InterPro: IPR00972	83.05
PF10168	717	Nup88: Nuclear pore component; InterPro: IPR019321	82.86
PF14727	418	PHTB1_N: PTHB1 N-terminus	82.48
PF14655	415	RAB3GAP2_N: Rab3 GTPase-activating protein regulat	80.6
PF05694	461	SBP56: 56kDa selenium binding protein (SBP56); Int	80.41

>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=5.3e-54  Score=336.75  Aligned_cols=297  Identities=59%  Similarity=1.063  Sum_probs=267.6

Q ss_pred             CCCcccccccccceeEEEEccCCCEEEEeeCCCcEEEEeecCCCc-eEEEEecCcccCeEEEEeeCCCCCCEEEEEeCCC
Q 022111            1 MPAQKIETGHEDTVHDVAMDFYGKRLATASSDSSIKIIGLSNSAS-QHLATLKGHRGPVWQVAWAHPKFGSILASCSYDG   79 (302)
Q Consensus         1 ~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~lw~~~~~~~-~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~s~D~   79 (302)
                      |+.+.+..+|++.|.++..+..|++||+|+.|++|+|+.+.+... ..+.+|.||+++|+.++|.+|+.|.+||||+.||
T Consensus         1 ~~~q~idt~H~D~IHda~lDyygkrlATcsSD~tVkIf~v~~n~~s~ll~~L~Gh~GPVwqv~wahPk~G~iLAScsYDg   80 (299)
T KOG1332|consen    1 TVMQTIDTQHEDMIHDAQLDYYGKRLATCSSDGTVKIFEVRNNGQSKLLAELTGHSGPVWKVAWAHPKFGTILASCSYDG   80 (299)
T ss_pred             CcceehhhhhhhhhhHhhhhhhcceeeeecCCccEEEEEEcCCCCceeeeEecCCCCCeeEEeecccccCcEeeEeecCc
Confidence            577888899999999999999999999999999999999865443 6788999999999999999999999999999999


Q ss_pred             eEEEEEcCCCCceeEEEEecCCCCCeeEEEecCCCCCcEEEEEecCCcEEEEEecCCCCeeeeeecccCCCCeEEEEeCC
Q 022111           80 QVIIWKEGNQNDWTQAHTFNDHKSSVNSIAWAPHELGLSLACGSSDGNISVFTATADGGWDTTRIDQAHPVGVTSVSWAP  159 (302)
Q Consensus        80 ~i~iwd~~~~~~~~~~~~~~~h~~~i~~l~~~pd~~~~~l~sg~~d~~v~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~  159 (302)
                      .|.||.-..+ +|........|...|++++|-|.+.|..|++++.||.|.+.+....+.+....+...|+..|++++|.|
T Consensus        81 kVIiWke~~g-~w~k~~e~~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~w~t~ki~~aH~~GvnsVswap  159 (299)
T KOG1332|consen   81 KVIIWKEENG-RWTKAYEHAAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGGWTTSKIVFAHEIGVNSVSWAP  159 (299)
T ss_pred             eEEEEecCCC-chhhhhhhhhhcccceeecccccccceEEEEeeCCCcEEEEEEcCCCCccchhhhhccccccceeeecC
Confidence            9999987654 788888888999999999999998899999999999999999887777777777779999999999999


Q ss_pred             CCCCCceeecccCCCceeEEEeeCCCcEEEEEEecCccccccccccccCCCceeEEEeeCCCCCCccEEEEEecCCeEEE
Q 022111          160 AMAPGALVGLGLLDPVQKLASCGCDNTVKVWKMYNGIWKMDCFPALQMHSDWVRSVAWAPNLGLPKSTIASASQDGTVVI  239 (302)
Q Consensus       160 ~~~~~~~~~~~~~~~~~~l~s~~~D~~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~l~s~s~D~~i~i  239 (302)
                      ...++.++.....++-++|+|||.|+.|+||+..++.|.+.  ++|.+|.++|++++|.|..++-..+|||+|+||++.|
T Consensus       160 a~~~g~~~~~~~~~~~krlvSgGcDn~VkiW~~~~~~w~~e--~~l~~H~dwVRDVAwaP~~gl~~s~iAS~SqDg~viI  237 (299)
T KOG1332|consen  160 ASAPGSLVDQGPAAKVKRLVSGGCDNLVKIWKFDSDSWKLE--RTLEGHKDWVRDVAWAPSVGLPKSTIASCSQDGTVII  237 (299)
T ss_pred             cCCCccccccCcccccceeeccCCccceeeeecCCcchhhh--hhhhhcchhhhhhhhccccCCCceeeEEecCCCcEEE
Confidence            98888777766666678999999999999999998877655  4589999999999999987665678999999999999


Q ss_pred             EEeccCCcceeeeeeccCCCcEEEEEEccCCCEEEEecCC-ceEEeeecCCceEEEeeecCC
Q 022111          240 WTCAKEGEQWEGRVLKDFKTPVWSVSWSLTGNLLAVADAN-NVTLWKEAVDGEWQQVSVVEP  300 (302)
Q Consensus       240 wd~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~la~~~~d-~i~~w~~~~~~~~~~~~~~~~  300 (302)
                      |..+.+.++|+..++.+|...+|.++||+.|++|++++.| ++++|+.+.+|+|++++++.+
T Consensus       238 wt~~~e~e~wk~tll~~f~~~~w~vSWS~sGn~LaVs~GdNkvtlwke~~~Gkw~~v~~~~~  299 (299)
T KOG1332|consen  238 WTKDEEYEPWKKTLLEEFPDVVWRVSWSLSGNILAVSGGDNKVTLWKENVDGKWEEVGEVSV  299 (299)
T ss_pred             EEecCccCcccccccccCCcceEEEEEeccccEEEEecCCcEEEEEEeCCCCcEEEccccCC
Confidence            9998777788888889999999999999999999999888 799999999999999988753

>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=9.5e-43  Score=288.80  Aligned_cols=253  Identities=28%  Similarity=0.466  Sum_probs=211.5

Q ss_pred             cccccccceeEEEEccCCCEEEEeeCCCcEEEEeecCCCceEEEEecCcccCeEEEEeeCCCCCCEEEEEeCCCeEEEEE
Q 022111            6 IETGHEDTVHDVAMDFYGKRLATASSDSSIKIIGLSNSASQHLATLKGHRGPVWQVAWAHPKFGSILASCSYDGQVIIWK   85 (302)
Q Consensus         6 ~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~s~D~~i~iwd   85 (302)
                      .+.||..+|.++.|+|+|+.||+|+-|.++|+||+..+  .+..++++|..-|.+++|+|+  |+.||||+.||+|++||
T Consensus       110 S~~GH~e~Vl~~~fsp~g~~l~tGsGD~TvR~WD~~Te--Tp~~t~KgH~~WVlcvawsPD--gk~iASG~~dg~I~lwd  185 (480)
T KOG0271|consen  110 SIAGHGEAVLSVQFSPTGSRLVTGSGDTTVRLWDLDTE--TPLFTCKGHKNWVLCVAWSPD--GKKIASGSKDGSIRLWD  185 (480)
T ss_pred             ccCCCCCcEEEEEecCCCceEEecCCCceEEeeccCCC--CcceeecCCccEEEEEEECCC--cchhhccccCCeEEEec
Confidence            36799999999999999999999999999999999764  467899999999999999975  99999999999999999


Q ss_pred             cCCCCceeEEEEecCCCCCeeEEEecCC---CCCcEEEEEecCCcEEEEEecCCCCeeeeeecccCCCCeEEEEeCCCCC
Q 022111           86 EGNQNDWTQAHTFNDHKSSVNSIAWAPH---ELGLSLACGSSDGNISVFTATADGGWDTTRIDQAHPVGVTSVSWAPAMA  162 (302)
Q Consensus        86 ~~~~~~~~~~~~~~~h~~~i~~l~~~pd---~~~~~l~sg~~d~~v~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~  162 (302)
                      ..++..  ....+.+|...|++++|.|-   ....+||+++.||.|+|||......  ...+ .+|+..|+|+.|.-+  
T Consensus       186 pktg~~--~g~~l~gH~K~It~Lawep~hl~p~~r~las~skDg~vrIWd~~~~~~--~~~l-sgHT~~VTCvrwGG~--  258 (480)
T KOG0271|consen  186 PKTGQQ--IGRALRGHKKWITALAWEPLHLVPPCRRLASSSKDGSVRIWDTKLGTC--VRTL-SGHTASVTCVRWGGE--  258 (480)
T ss_pred             CCCCCc--ccccccCcccceeEEeecccccCCCccceecccCCCCEEEEEccCceE--EEEe-ccCccceEEEEEcCC--
Confidence            887653  45678999999999999763   2356899999999999999864322  2233 499999999999643  


Q ss_pred             CCceeecccCCCceeEEEeeCCCcEEEEEEecCccccccccccccCCCceeEEEeeCCCC-----------C--------
Q 022111          163 PGALVGLGLLDPVQKLASCGCDNTVKVWKMYNGIWKMDCFPALQMHSDWVRSVAWAPNLG-----------L--------  223 (302)
Q Consensus       163 ~~~~~~~~~~~~~~~l~s~~~D~~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~-----------~--------  223 (302)
                                   .+|+||+.|++|++|+...+    .+.+.+.||..+|+.++.+.+..           .        
T Consensus       259 -------------gliySgS~DrtIkvw~a~dG----~~~r~lkGHahwvN~lalsTdy~LRtgaf~~t~~~~~~~se~~  321 (480)
T KOG0271|consen  259 -------------GLIYSGSQDRTIKVWRALDG----KLCRELKGHAHWVNHLALSTDYVLRTGAFDHTGRKPKSFSEEQ  321 (480)
T ss_pred             -------------ceEEecCCCceEEEEEccch----hHHHhhcccchheeeeeccchhhhhccccccccccCCChHHHH
Confidence                         58999999999999999876    56788999999999999883211           0        


Q ss_pred             -------------CccEEEEEecCCeEEEEEeccCCcceeeeeeccCCCcEEEEEEccCCCEEEEecCC-ceEEeeecC
Q 022111          224 -------------PKSTIASASQDGTVVIWTCAKEGEQWEGRVLKDFKTPVWSVSWSLTGNLLAVADAN-NVTLWKEAV  288 (302)
Q Consensus       224 -------------~~~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~la~~~~d-~i~~w~~~~  288 (302)
                                   .+..++|||+|.++.+|+....+.+.  .-+.+|...|..+.||||+++||+|+=| +|+||+...
T Consensus       322 ~~Al~rY~~~~~~~~erlVSgsDd~tlflW~p~~~kkpi--~rmtgHq~lVn~V~fSPd~r~IASaSFDkSVkLW~g~t  398 (480)
T KOG0271|consen  322 KKALERYEAVLKDSGERLVSGSDDFTLFLWNPFKSKKPI--TRMTGHQALVNHVSFSPDGRYIASASFDKSVKLWDGRT  398 (480)
T ss_pred             HHHHHHHHHhhccCcceeEEecCCceEEEecccccccch--hhhhchhhheeeEEECCCccEEEEeecccceeeeeCCC
Confidence                         13469999999999999976543221  1236788889999999999999999888 799999754

>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]

Probab=100.00  E-value=6.7e-42  Score=286.79  Aligned_cols=252  Identities=25%  Similarity=0.398  Sum_probs=217.4

Q ss_pred             ccccceeEEEEccCCCEEEEeeCCCcEEEEeecCCCceEEEEecCcccCeEEEEeeCCCCCCEEEEEeCCCeEEEEEcCC
Q 022111            9 GHEDTVHDVAMDFYGKRLATASSDSSIKIIGLSNSASQHLATLKGHRGPVWQVAWAHPKFGSILASCSYDGQVIIWKEGN   88 (302)
Q Consensus         9 ~h~~~v~~~~~s~~~~~l~s~~~d~~v~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~s~D~~i~iwd~~~   88 (302)
                      |-+.+|..+.|+.|++.|||||.+|.++||+...  ...+.+|.||...|.++.|.|..++..+|||+.||++++|++..
T Consensus       173 gd~rPis~~~fS~ds~~laT~swsG~~kvW~~~~--~~~~~~l~gH~~~v~~~~fhP~~~~~~lat~s~Dgtvklw~~~~  250 (459)
T KOG0272|consen  173 GDTRPISGCSFSRDSKHLATGSWSGLVKVWSVPQ--CNLLQTLRGHTSRVGAAVFHPVDSDLNLATASADGTVKLWKLSQ  250 (459)
T ss_pred             cCCCcceeeEeecCCCeEEEeecCCceeEeecCC--cceeEEEeccccceeeEEEccCCCccceeeeccCCceeeeccCC
Confidence            5677899999999999999999999999999865  45678999999999999997642466899999999999999866


Q ss_pred             CCceeEEEEecCCCCCeeEEEecCCCCCcEEEEEecCCcEEEEEecCCCCeeeeeecccCCCCeEEEEeCCCCCCCceee
Q 022111           89 QNDWTQAHTFNDHKSSVNSIAWAPHELGLSLACGSSDGNISVFTATADGGWDTTRIDQAHPVGVTSVSWAPAMAPGALVG  168 (302)
Q Consensus        89 ~~~~~~~~~~~~h~~~i~~l~~~pd~~~~~l~sg~~d~~v~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~  168 (302)
                      .   +++..+.+|..+|..++|+|+  |.+|+|++.|.+-++||+++.....  . ..+|...|.+++|.|++       
T Consensus       251 e---~~l~~l~gH~~RVs~VafHPs--G~~L~TasfD~tWRlWD~~tk~ElL--~-QEGHs~~v~~iaf~~DG-------  315 (459)
T KOG0272|consen  251 E---TPLQDLEGHLARVSRVAFHPS--GKFLGTASFDSTWRLWDLETKSELL--L-QEGHSKGVFSIAFQPDG-------  315 (459)
T ss_pred             C---cchhhhhcchhhheeeeecCC--CceeeecccccchhhcccccchhhH--h-hcccccccceeEecCCC-------
Confidence            4   478889999999999999998  8899999999999999998654322  2 24899999999999874       


Q ss_pred             cccCCCceeEEEeeCCCcEEEEEEecCccccccccccccCCCceeEEEeeCCCCCCccEEEEEecCCeEEEEEeccCCcc
Q 022111          169 LGLLDPVQKLASCGCDNTVKVWKMYNGIWKMDCFPALQMHSDWVRSVAWAPNLGLPKSTIASASQDGTVVIWTCAKEGEQ  248 (302)
Q Consensus       169 ~~~~~~~~~l~s~~~D~~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~l~s~s~D~~i~iwd~~~~~~~  248 (302)
                             .+++|||.|..-+|||++++    .++-.+.||...|.+|+|+|+|    .+|||||.|+++||||++.... 
T Consensus       316 -------SL~~tGGlD~~~RvWDlRtg----r~im~L~gH~k~I~~V~fsPNG----y~lATgs~Dnt~kVWDLR~r~~-  379 (459)
T KOG0272|consen  316 -------SLAATGGLDSLGRVWDLRTG----RCIMFLAGHIKEILSVAFSPNG----YHLATGSSDNTCKVWDLRMRSE-  379 (459)
T ss_pred             -------ceeeccCccchhheeecccC----cEEEEecccccceeeEeECCCc----eEEeecCCCCcEEEeeeccccc-
Confidence                   78999999999999999998    4556688999999999999995    8999999999999999987543 


Q ss_pred             eeeeeeccCCCcEEEEEEcc-CCCEEEEecCC-ceEEeeecCCceEEEeeec
Q 022111          249 WEGRVLKDFKTPVWSVSWSL-TGNLLAVADAN-NVTLWKEAVDGEWQQVSVV  298 (302)
Q Consensus       249 ~~~~~~~~~~~~v~~~~~sp-dg~~la~~~~d-~i~~w~~~~~~~~~~~~~~  298 (302)
                        ..+...|.+-|..|.|+| .|.+|++++-| +++||...   .|.+++.+
T Consensus       380 --ly~ipAH~nlVS~Vk~~p~~g~fL~TasyD~t~kiWs~~---~~~~~ksL  426 (459)
T KOG0272|consen  380 --LYTIPAHSNLVSQVKYSPQEGYFLVTASYDNTVKIWSTR---TWSPLKSL  426 (459)
T ss_pred             --ceecccccchhhheEecccCCeEEEEcccCcceeeecCC---Ccccchhh
Confidence              234568888899999999 78999999988 79999753   57666543

>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]

Probab=100.00  E-value=1.8e-41  Score=284.23  Aligned_cols=247  Identities=27%  Similarity=0.372  Sum_probs=214.7

Q ss_pred             CcccccccccceeEEEEccC--CCEEEEeeCCCcEEEEeecCCCceEEEEecCcccCeEEEEeeCCCCCCEEEEEeCCCe
Q 022111            3 AQKIETGHEDTVHDVAMDFY--GKRLATASSDSSIKIIGLSNSASQHLATLKGHRGPVWQVAWAHPKFGSILASCSYDGQ   80 (302)
Q Consensus         3 ~~~~~~~h~~~v~~~~~s~~--~~~l~s~~~d~~v~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~s~D~~   80 (302)
                      ..+++.||...|.++.|+|.  +..||||+.||++++|++++.  .++..+.+|...|..++|.|.  |++|+|++.|.+
T Consensus       209 ~~~~l~gH~~~v~~~~fhP~~~~~~lat~s~Dgtvklw~~~~e--~~l~~l~gH~~RVs~VafHPs--G~~L~TasfD~t  284 (459)
T KOG0272|consen  209 LLQTLRGHTSRVGAAVFHPVDSDLNLATASADGTVKLWKLSQE--TPLQDLEGHLARVSRVAFHPS--GKFLGTASFDST  284 (459)
T ss_pred             eeEEEeccccceeeEEEccCCCccceeeeccCCceeeeccCCC--cchhhhhcchhhheeeeecCC--Cceeeecccccc
Confidence            45678899999999999997  569999999999999999764  468889999999999999753  999999999999


Q ss_pred             EEEEEcCCCCceeEEEEecCCCCCeeEEEecCCCCCcEEEEEecCCcEEEEEecCCCCeeeeeecccCCCCeEEEEeCCC
Q 022111           81 VIIWKEGNQNDWTQAHTFNDHKSSVNSIAWAPHELGLSLACGSSDGNISVFTATADGGWDTTRIDQAHPVGVTSVSWAPA  160 (302)
Q Consensus        81 i~iwd~~~~~~~~~~~~~~~h~~~i~~l~~~pd~~~~~l~sg~~d~~v~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~  160 (302)
                      -++||+++..   .+....+|...|.+|+|.||  |.+++||+.|..-+|||++++.+.  ..+ .+|..+|.++.|+|+
T Consensus       285 WRlWD~~tk~---ElL~QEGHs~~v~~iaf~~D--GSL~~tGGlD~~~RvWDlRtgr~i--m~L-~gH~k~I~~V~fsPN  356 (459)
T KOG0272|consen  285 WRLWDLETKS---ELLLQEGHSKGVFSIAFQPD--GSLAATGGLDSLGRVWDLRTGRCI--MFL-AGHIKEILSVAFSPN  356 (459)
T ss_pred             hhhcccccch---hhHhhcccccccceeEecCC--CceeeccCccchhheeecccCcEE--EEe-cccccceeeEeECCC
Confidence            9999998764   34455689999999999998  779999999999999999976543  344 389999999999996


Q ss_pred             CCCCceeecccCCCceeEEEeeCCCcEEEEEEecCccccccccccccCCCceeEEEeeCCCCCCccEEEEEecCCeEEEE
Q 022111          161 MAPGALVGLGLLDPVQKLASCGCDNTVKVWKMYNGIWKMDCFPALQMHSDWVRSVAWAPNLGLPKSTIASASQDGTVVIW  240 (302)
Q Consensus       161 ~~~~~~~~~~~~~~~~~l~s~~~D~~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~l~s~s~D~~i~iw  240 (302)
                                    |..|||||.|++++|||++..    .++.+.-+|.+-|..|.|+|+.   +.+|+|+|.|.+++||
T Consensus       357 --------------Gy~lATgs~Dnt~kVWDLR~r----~~ly~ipAH~nlVS~Vk~~p~~---g~fL~TasyD~t~kiW  415 (459)
T KOG0272|consen  357 --------------GYHLATGSSDNTCKVWDLRMR----SELYTIPAHSNLVSQVKYSPQE---GYFLVTASYDNTVKIW  415 (459)
T ss_pred             --------------ceEEeecCCCCcEEEeeeccc----ccceecccccchhhheEecccC---CeEEEEcccCcceeee
Confidence                          478999999999999999865    4466778999999999999965   6899999999999999


Q ss_pred             EeccCCcceeeeeeccCCCcEEEEEEccCCCEEEEecCC-ceEEee
Q 022111          241 TCAKEGEQWEGRVLKDFKTPVWSVSWSLTGNLLAVADAN-NVTLWK  285 (302)
Q Consensus       241 d~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~la~~~~d-~i~~w~  285 (302)
                      ..+.-.   ....+.+|.+.|.+++.+||+..+++++-| ++++|.
T Consensus       416 s~~~~~---~~ksLaGHe~kV~s~Dis~d~~~i~t~s~DRT~KLW~  458 (459)
T KOG0272|consen  416 STRTWS---PLKSLAGHEGKVISLDISPDSQAIATSSFDRTIKLWR  458 (459)
T ss_pred             cCCCcc---cchhhcCCccceEEEEeccCCceEEEeccCceeeecc
Confidence            765421   134568999999999999999999999999 899995

>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=2e-40  Score=275.04  Aligned_cols=260  Identities=27%  Similarity=0.402  Sum_probs=206.2

Q ss_pred             ccccccccceeEEEEccCCCEEEEeeCCCcEEEEeecCCCceEEEEecCcccCeEEEEeeCCC---CCCEEEEEeCCCeE
Q 022111            5 KIETGHEDTVHDVAMDFYGKRLATASSDSSIKIIGLSNSASQHLATLKGHRGPVWQVAWAHPK---FGSILASCSYDGQV   81 (302)
Q Consensus         5 ~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~~---~~~~l~s~s~D~~i   81 (302)
                      .+..+|+.-|.+++|+|||+.||||+.||+|++||...+. +....|.+|...|++++|.|-+   ...+|||+|.|+.+
T Consensus       151 ~t~KgH~~WVlcvawsPDgk~iASG~~dg~I~lwdpktg~-~~g~~l~gH~K~It~Lawep~hl~p~~r~las~skDg~v  229 (480)
T KOG0271|consen  151 FTCKGHKNWVLCVAWSPDGKKIASGSKDGSIRLWDPKTGQ-QIGRALRGHKKWITALAWEPLHLVPPCRRLASSSKDGSV  229 (480)
T ss_pred             eeecCCccEEEEEEECCCcchhhccccCCeEEEecCCCCC-cccccccCcccceeEEeecccccCCCccceecccCCCCE
Confidence            4456999999999999999999999999999999976543 3456899999999999997521   35689999999999


Q ss_pred             EEEEcCCCCceeEEEEecCCCCCeeEEEecCCCCCcEEEEEecCCcEEEEEecCCCCeeeeeecccCCCCeEEEEe----
Q 022111           82 IIWKEGNQNDWTQAHTFNDHKSSVNSIAWAPHELGLSLACGSSDGNISVFTATADGGWDTTRIDQAHPVGVTSVSW----  157 (302)
Q Consensus        82 ~iwd~~~~~~~~~~~~~~~h~~~i~~l~~~pd~~~~~l~sg~~d~~v~~~~~~~~~~~~~~~~~~~h~~~v~~~~~----  157 (302)
                      +|||+..+   +++..+.+|+.+|+|+.|.-+  | ++++|+.|++|++|+...+...  ..+ .+|...|+.++.    
T Consensus       230 rIWd~~~~---~~~~~lsgHT~~VTCvrwGG~--g-liySgS~DrtIkvw~a~dG~~~--r~l-kGHahwvN~lalsTdy  300 (480)
T KOG0271|consen  230 RIWDTKLG---TCVRTLSGHTASVTCVRWGGE--G-LIYSGSQDRTIKVWRALDGKLC--REL-KGHAHWVNHLALSTDY  300 (480)
T ss_pred             EEEEccCc---eEEEEeccCccceEEEEEcCC--c-eEEecCCCceEEEEEccchhHH--Hhh-cccchheeeeeccchh
Confidence            99998654   477889999999999999754  2 7999999999999987542111  112 134434444333    


Q ss_pred             ---------------------------------------------------CCCCCCC----------ceeecccCCCce
Q 022111          158 ---------------------------------------------------APAMAPG----------ALVGLGLLDPVQ  176 (302)
Q Consensus       158 ---------------------------------------------------~~~~~~~----------~~~~~~~~~~~~  176 (302)
                                                                         .|....-          -+..+.++++++
T Consensus       301 ~LRtgaf~~t~~~~~~~se~~~~Al~rY~~~~~~~~erlVSgsDd~tlflW~p~~~kkpi~rmtgHq~lVn~V~fSPd~r  380 (480)
T KOG0271|consen  301 VLRTGAFDHTGRKPKSFSEEQKKALERYEAVLKDSGERLVSGSDDFTLFLWNPFKSKKPITRMTGHQALVNHVSFSPDGR  380 (480)
T ss_pred             hhhccccccccccCCChHHHHHHHHHHHHHhhccCcceeEEecCCceEEEecccccccchhhhhchhhheeeEEECCCcc
Confidence                                                               3321110          011123456789


Q ss_pred             eEEEeeCCCcEEEEEEecCccccccccccccCCCceeEEEeeCCCCCCccEEEEEecCCeEEEEEeccCCcceeeeeecc
Q 022111          177 KLASCGCDNTVKVWKMYNGIWKMDCFPALQMHSDWVRSVAWAPNLGLPKSTIASASQDGTVVIWTCAKEGEQWEGRVLKD  256 (302)
Q Consensus       177 ~l~s~~~D~~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~  256 (302)
                      ++||++.|+.|++||.+++    +.+.+|.||-+.|+.++|+.|.    +.|+|||.|.+|++|++++.+-   ..-+.+
T Consensus       381 ~IASaSFDkSVkLW~g~tG----k~lasfRGHv~~VYqvawsaDs----RLlVS~SkDsTLKvw~V~tkKl---~~DLpG  449 (480)
T KOG0271|consen  381 YIASASFDKSVKLWDGRTG----KFLASFRGHVAAVYQVAWSADS----RLLVSGSKDSTLKVWDVRTKKL---KQDLPG  449 (480)
T ss_pred             EEEEeecccceeeeeCCCc----chhhhhhhccceeEEEEeccCc----cEEEEcCCCceEEEEEeeeeee---cccCCC
Confidence            9999999999999999998    4677899999999999999984    7899999999999999986431   233578


Q ss_pred             CCCcEEEEEEccCCCEEEEecCC-ceEEee
Q 022111          257 FKTPVWSVSWSLTGNLLAVADAN-NVTLWK  285 (302)
Q Consensus       257 ~~~~v~~~~~spdg~~la~~~~d-~i~~w~  285 (302)
                      |.++|+++.|+|||.++++|+.| -++||.
T Consensus       450 h~DEVf~vDwspDG~rV~sggkdkv~~lw~  479 (480)
T KOG0271|consen  450 HADEVFAVDWSPDGQRVASGGKDKVLRLWR  479 (480)
T ss_pred             CCceEEEEEecCCCceeecCCCceEEEeec
Confidence            89999999999999999999999 589995

>KOG0645 consensus WD40 repeat protein [General function prediction only]

Probab=100.00  E-value=4.8e-38  Score=250.33  Aligned_cols=251  Identities=30%  Similarity=0.533  Sum_probs=213.1

Q ss_pred             CcccccccccceeEEEEccC-CCEEEEeeCCCcEEEEeecC-CCceEEEEe-cCcccCeEEEEeeCCCCCCEEEEEeCCC
Q 022111            3 AQKIETGHEDTVHDVAMDFY-GKRLATASSDSSIKIIGLSN-SASQHLATL-KGHRGPVWQVAWAHPKFGSILASCSYDG   79 (302)
Q Consensus         3 ~~~~~~~h~~~v~~~~~s~~-~~~l~s~~~d~~v~lw~~~~-~~~~~~~~~-~~h~~~v~~v~~~~~~~~~~l~s~s~D~   79 (302)
                      ..+..++|++.+..++|+|- |..|||||.|+.||+|+..+ ....+...+ .+|+..|+.++|+|.  |++||++|.|.
T Consensus         6 ~~~~~~gh~~r~W~~awhp~~g~ilAscg~Dk~vriw~~~~~~s~~ck~vld~~hkrsVRsvAwsp~--g~~La~aSFD~   83 (312)
T KOG0645|consen    6 LEQKLSGHKDRVWSVAWHPGKGVILASCGTDKAVRIWSTSSGDSWTCKTVLDDGHKRSVRSVAWSPH--GRYLASASFDA   83 (312)
T ss_pred             eEEeecCCCCcEEEEEeccCCceEEEeecCCceEEEEecCCCCcEEEEEeccccchheeeeeeecCC--CcEEEEeeccc
Confidence            34667899999999999997 78999999999999999863 223344444 469999999999864  89999999999


Q ss_pred             eEEEEEcCCCCceeEEEEecCCCCCeeEEEecCCCCCcEEEEEecCCcEEEEEecCCCCeeeeeecccCCCCeEEEEeCC
Q 022111           80 QVIIWKEGNQNDWTQAHTFNDHKSSVNSIAWAPHELGLSLACGSSDGNISVFTATADGGWDTTRIDQAHPVGVTSVSWAP  159 (302)
Q Consensus        80 ~i~iwd~~~~~~~~~~~~~~~h~~~i~~l~~~pd~~~~~l~sg~~d~~v~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~  159 (302)
                      ++.||.-. ...+.++.++.+|...|.|++|+++  |.+||+|+.|+.|-+|....+..+....+.+.|++.|..+.|.|
T Consensus        84 t~~Iw~k~-~~efecv~~lEGHEnEVK~Vaws~s--G~~LATCSRDKSVWiWe~deddEfec~aVL~~HtqDVK~V~WHP  160 (312)
T KOG0645|consen   84 TVVIWKKE-DGEFECVATLEGHENEVKCVAWSAS--GNYLATCSRDKSVWIWEIDEDDEFECIAVLQEHTQDVKHVIWHP  160 (312)
T ss_pred             eEEEeecC-CCceeEEeeeeccccceeEEEEcCC--CCEEEEeeCCCeEEEEEecCCCcEEEEeeeccccccccEEEEcC
Confidence            99999754 3467889999999999999999997  77999999999999999987777777666679999999999999


Q ss_pred             CCCCCceeecccCCCceeEEEeeCCCcEEEEEEe-cCccccccccccccCCCceeEEEeeCCCCCCccEEEEEecCCeEE
Q 022111          160 AMAPGALVGLGLLDPVQKLASCGCDNTVKVWKMY-NGIWKMDCFPALQMHSDWVRSVAWAPNLGLPKSTIASASQDGTVV  238 (302)
Q Consensus       160 ~~~~~~~~~~~~~~~~~~l~s~~~D~~v~iwd~~-~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~l~s~s~D~~i~  238 (302)
                      .+              .+|+|||.|++|++|+-. ...|  .+.+++.+|...|.+++|+|.|    ..|+++++|++++
T Consensus       161 t~--------------dlL~S~SYDnTIk~~~~~~dddW--~c~~tl~g~~~TVW~~~F~~~G----~rl~s~sdD~tv~  220 (312)
T KOG0645|consen  161 TE--------------DLLFSCSYDNTIKVYRDEDDDDW--ECVQTLDGHENTVWSLAFDNIG----SRLVSCSDDGTVS  220 (312)
T ss_pred             Cc--------------ceeEEeccCCeEEEEeecCCCCe--eEEEEecCccceEEEEEecCCC----ceEEEecCCcceE
Confidence            75              789999999999999977 4444  4678899999999999999985    7899999999999


Q ss_pred             EEEeccCCcceeeeeeccCCCcEEEEEEccCCCEEEEecCC-ceEEeeec
Q 022111          239 IWTCAKEGEQWEGRVLKDFKTPVWSVSWSLTGNLLAVADAN-NVTLWKEA  287 (302)
Q Consensus       239 iwd~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~la~~~~d-~i~~w~~~  287 (302)
                      ||....       .+...++.+++.++|. + ..||+++.| .|+|++..
T Consensus       221 Iw~~~~-------~~~~~~sr~~Y~v~W~-~-~~IaS~ggD~~i~lf~~s  261 (312)
T KOG0645|consen  221 IWRLYT-------DLSGMHSRALYDVPWD-N-GVIASGGGDDAIRLFKES  261 (312)
T ss_pred             eeeecc-------CcchhcccceEeeeec-c-cceEeccCCCEEEEEEec
Confidence            997542       2234566789999998 4 467777777 89999975

>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]

Probab=100.00  E-value=4.6e-37  Score=245.67  Aligned_cols=252  Identities=25%  Similarity=0.363  Sum_probs=209.2

Q ss_pred             cccccccccceeEEEEccC-CCEEEEeeCCCcEEEEeecCCC---ceEEEEecCcccCeEEEEeeCCCCCCEEEEEeCCC
Q 022111            4 QKIETGHEDTVHDVAMDFY-GKRLATASSDSSIKIIGLSNSA---SQHLATLKGHRGPVWQVAWAHPKFGSILASCSYDG   79 (302)
Q Consensus         4 ~~~~~~h~~~v~~~~~s~~-~~~l~s~~~d~~v~lw~~~~~~---~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~s~D~   79 (302)
                      ..++.+|++.|++++..+. .+.+++++.|+++.+|++....   +.+.+.+.||+..|..+..+++  |++.+|+|.|+
T Consensus         8 ~~tl~gh~d~Vt~la~~~~~~~~l~sasrDk~ii~W~L~~dd~~~G~~~r~~~GHsH~v~dv~~s~d--g~~alS~swD~   85 (315)
T KOG0279|consen    8 RGTLEGHTDWVTALAIKIKNSDILVSASRDKTIIVWKLTSDDIKYGVPVRRLTGHSHFVSDVVLSSD--GNFALSASWDG   85 (315)
T ss_pred             eeeecCCCceEEEEEeecCCCceEEEcccceEEEEEEeccCccccCceeeeeeccceEecceEEccC--CceEEeccccc
Confidence            3457799999999998876 4789999999999999996533   4557889999999999998764  89999999999


Q ss_pred             eEEEEEcCCCCceeEEEEecCCCCCeeEEEecCCCCCcEEEEEecCCcEEEEEecCCCCeeeeeecccCCCCeEEEEeCC
Q 022111           80 QVIIWKEGNQNDWTQAHTFNDHKSSVNSIAWAPHELGLSLACGSSDGNISVFTATADGGWDTTRIDQAHPVGVTSVSWAP  159 (302)
Q Consensus        80 ~i~iwd~~~~~~~~~~~~~~~h~~~i~~l~~~pd~~~~~l~sg~~d~~v~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~  159 (302)
                      ++++||+..+   ++...|.+|..-|.+++|+||  ..++++|+.|++|++|+.-..  ......+..+...|+++.|+|
T Consensus        86 ~lrlWDl~~g---~~t~~f~GH~~dVlsva~s~d--n~qivSGSrDkTiklwnt~g~--ck~t~~~~~~~~WVscvrfsP  158 (315)
T KOG0279|consen   86 TLRLWDLATG---ESTRRFVGHTKDVLSVAFSTD--NRQIVSGSRDKTIKLWNTLGV--CKYTIHEDSHREWVSCVRFSP  158 (315)
T ss_pred             eEEEEEecCC---cEEEEEEecCCceEEEEecCC--CceeecCCCcceeeeeeeccc--EEEEEecCCCcCcEEEEEEcC
Confidence            9999999876   366789999999999999999  458999999999999987532  232332323477899999999


Q ss_pred             CCCCCceeecccCCCceeEEEeeCCCcEEEEEEecCccccccccccccCCCceeEEEeeCCCCCCccEEEEEecCCeEEE
Q 022111          160 AMAPGALVGLGLLDPVQKLASCGCDNTVKVWKMYNGIWKMDCFPALQMHSDWVRSVAWAPNLGLPKSTIASASQDGTVVI  239 (302)
Q Consensus       160 ~~~~~~~~~~~~~~~~~~l~s~~~D~~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~l~s~s~D~~i~i  239 (302)
                      ...            +-.|+++|.|++|++||+++.    +....+.||.+.|+.+.+||||    ...++|+.||.+.+
T Consensus       159 ~~~------------~p~Ivs~s~DktvKvWnl~~~----~l~~~~~gh~~~v~t~~vSpDG----slcasGgkdg~~~L  218 (315)
T KOG0279|consen  159 NES------------NPIIVSASWDKTVKVWNLRNC----QLRTTFIGHSGYVNTVTVSPDG----SLCASGGKDGEAML  218 (315)
T ss_pred             CCC------------CcEEEEccCCceEEEEccCCc----chhhccccccccEEEEEECCCC----CEEecCCCCceEEE
Confidence            742            357999999999999999875    3456788999999999999996    78999999999999


Q ss_pred             EEeccCCcceeeeeeccCCCcEEEEEEccCCCEEEEecCCceEEeeecC
Q 022111          240 WTCAKEGEQWEGRVLKDFKTPVWSVSWSLTGNLLAVADANNVTLWKEAV  288 (302)
Q Consensus       240 wd~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~la~~~~d~i~~w~~~~  288 (302)
                      ||++..+.    ....++...|.+++|+|+.-.|+.+-..+|+||+...
T Consensus       219 wdL~~~k~----lysl~a~~~v~sl~fspnrywL~~at~~sIkIwdl~~  263 (315)
T KOG0279|consen  219 WDLNEGKN----LYSLEAFDIVNSLCFSPNRYWLCAATATSIKIWDLES  263 (315)
T ss_pred             EEccCCce----eEeccCCCeEeeEEecCCceeEeeccCCceEEEeccc
Confidence            99986532    2235677889999999998777777666899999754

>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]

Probab=100.00  E-value=5.2e-38  Score=281.37  Aligned_cols=242  Identities=28%  Similarity=0.433  Sum_probs=207.0

Q ss_pred             ccceeEEEEccCCCEEEEeeCCCcEEEEeecCCC-----------------------------ceEEEEecCcccCeEEE
Q 022111           11 EDTVHDVAMDFYGKRLATASSDSSIKIIGLSNSA-----------------------------SQHLATLKGHRGPVWQV   61 (302)
Q Consensus        11 ~~~v~~~~~s~~~~~l~s~~~d~~v~lw~~~~~~-----------------------------~~~~~~~~~h~~~v~~v   61 (302)
                      ...++++.|++|+++||.|..|..|++|.+....                             .....++.||+++|+..
T Consensus       378 ~~~v~ca~fSddssmlA~Gf~dS~i~~~Sl~p~kl~~lk~~~~l~~~d~~sad~~~~~~D~~~~~~~~~L~GH~GPVyg~  457 (707)
T KOG0263|consen  378 YQGVTCAEFSDDSSMLACGFVDSSVRVWSLTPKKLKKLKDASDLSNIDTESADVDVDMLDDDSSGTSRTLYGHSGPVYGC  457 (707)
T ss_pred             CCcceeEeecCCcchhhccccccEEEEEecchhhhccccchhhhccccccccchhhhhccccCCceeEEeecCCCceeee
Confidence            3478999999999999999999999999985211                             01134578999999999


Q ss_pred             EeeCCCCCCEEEEEeCCCeEEEEEcCCCCceeEEEEecCCCCCeeEEEecCCCCCcEEEEEecCCcEEEEEecCCCCeee
Q 022111           62 AWAHPKFGSILASCSYDGQVIIWKEGNQNDWTQAHTFNDHKSSVNSIAWAPHELGLSLACGSSDGNISVFTATADGGWDT  141 (302)
Q Consensus        62 ~~~~~~~~~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~h~~~i~~l~~~pd~~~~~l~sg~~d~~v~~~~~~~~~~~~~  141 (302)
                      +|+|+  .++|++||+|+++|+|.+.+.   .++-.+.+|..||.++.|+|.  |.++||++.|++-++|......   +
T Consensus       458 sFsPd--~rfLlScSED~svRLWsl~t~---s~~V~y~GH~~PVwdV~F~P~--GyYFatas~D~tArLWs~d~~~---P  527 (707)
T KOG0263|consen  458 SFSPD--RRFLLSCSEDSSVRLWSLDTW---SCLVIYKGHLAPVWDVQFAPR--GYYFATASHDQTARLWSTDHNK---P  527 (707)
T ss_pred             eeccc--ccceeeccCCcceeeeecccc---eeEEEecCCCcceeeEEecCC--ceEEEecCCCceeeeeecccCC---c
Confidence            99875  689999999999999998664   577788999999999999997  8999999999999999876432   2


Q ss_pred             eeecccCCCCeEEEEeCCCCCCCceeecccCCCceeEEEeeCCCcEEEEEEecCccccccccccccCCCceeEEEeeCCC
Q 022111          142 TRIDQAHPVGVTSVSWAPAMAPGALVGLGLLDPVQKLASCGCDNTVKVWKMYNGIWKMDCFPALQMHSDWVRSVAWAPNL  221 (302)
Q Consensus       142 ~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~D~~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~  221 (302)
                      .++-.+|...|.|+.|.|+.              .++++||.|.+||+||+.++    ..++.|.||+++|.+|+|||+|
T Consensus       528 lRifaghlsDV~cv~FHPNs--------------~Y~aTGSsD~tVRlWDv~~G----~~VRiF~GH~~~V~al~~Sp~G  589 (707)
T KOG0263|consen  528 LRIFAGHLSDVDCVSFHPNS--------------NYVATGSSDRTVRLWDVSTG----NSVRIFTGHKGPVTALAFSPCG  589 (707)
T ss_pred             hhhhcccccccceEEECCcc--------------cccccCCCCceEEEEEcCCC----cEEEEecCCCCceEEEEEcCCC
Confidence            33445899999999999964              79999999999999999988    4577889999999999999985


Q ss_pred             CCCccEEEEEecCCeEEEEEeccCCcceeeeeeccCCCcEEEEEEccCCCEEEEecCC-ceEEeeec
Q 022111          222 GLPKSTIASASQDGTVVIWTCAKEGEQWEGRVLKDFKTPVWSVSWSLTGNLLAVADAN-NVTLWKEA  287 (302)
Q Consensus       222 ~~~~~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~la~~~~d-~i~~w~~~  287 (302)
                          .+|++|++|+.|+|||+.....   ...+.+|.+.|.+++||.||.+||+++.| +|++||..
T Consensus       590 ----r~LaSg~ed~~I~iWDl~~~~~---v~~l~~Ht~ti~SlsFS~dg~vLasgg~DnsV~lWD~~  649 (707)
T KOG0263|consen  590 ----RYLASGDEDGLIKIWDLANGSL---VKQLKGHTGTIYSLSFSRDGNVLASGGADNSVRLWDLT  649 (707)
T ss_pred             ----ceEeecccCCcEEEEEcCCCcc---hhhhhcccCceeEEEEecCCCEEEecCCCCeEEEEEch
Confidence                8899999999999999976321   23346788899999999999999999999 79999973

>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]

Probab=100.00  E-value=1.5e-36  Score=242.75  Aligned_cols=248  Identities=21%  Similarity=0.298  Sum_probs=197.3

Q ss_pred             CcccccccccceeEEEEccCCCEEEEeeCCCcEEEEeecCCCceEEEEecCcccCeEEEEeeCCCCCCEEEEEeCCCeEE
Q 022111            3 AQKIETGHEDTVHDVAMDFYGKRLATASSDSSIKIIGLSNSASQHLATLKGHRGPVWQVAWAHPKFGSILASCSYDGQVI   82 (302)
Q Consensus         3 ~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~s~D~~i~   82 (302)
                      +++.+.||+-.|..+..++||++++|++.|+++|+||+..+  +....|-||...|.+++|+++  +..++|||.|++|+
T Consensus        55 ~~r~~~GHsH~v~dv~~s~dg~~alS~swD~~lrlWDl~~g--~~t~~f~GH~~dVlsva~s~d--n~qivSGSrDkTik  130 (315)
T KOG0279|consen   55 PVRRLTGHSHFVSDVVLSSDGNFALSASWDGTLRLWDLATG--ESTRRFVGHTKDVLSVAFSTD--NRQIVSGSRDKTIK  130 (315)
T ss_pred             eeeeeeccceEecceEEccCCceEEeccccceEEEEEecCC--cEEEEEEecCCceEEEEecCC--CceeecCCCcceee
Confidence            45668899999999999999999999999999999999764  556788999999999999875  68999999999999


Q ss_pred             EEEcCCCCceeEEEEecCC--CCCeeEEEecCCCCCcEEEEEecCCcEEEEEecCCCCeeeeeecccCCCCeEEEEeCCC
Q 022111           83 IWKEGNQNDWTQAHTFNDH--KSSVNSIAWAPHELGLSLACGSSDGNISVFTATADGGWDTTRIDQAHPVGVTSVSWAPA  160 (302)
Q Consensus        83 iwd~~~~~~~~~~~~~~~h--~~~i~~l~~~pd~~~~~l~sg~~d~~v~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~  160 (302)
                      +|+.-..    +..+...+  .+-|+|+.|+|+....++++++.|++|++||++.-   +......+|...++.+.++|+
T Consensus       131 lwnt~g~----ck~t~~~~~~~~WVscvrfsP~~~~p~Ivs~s~DktvKvWnl~~~---~l~~~~~gh~~~v~t~~vSpD  203 (315)
T KOG0279|consen  131 LWNTLGV----CKYTIHEDSHREWVSCVRFSPNESNPIIVSASWDKTVKVWNLRNC---QLRTTFIGHSGYVNTVTVSPD  203 (315)
T ss_pred             eeeeccc----EEEEEecCCCcCcEEEEEEcCCCCCcEEEEccCCceEEEEccCCc---chhhccccccccEEEEEECCC
Confidence            9997543    44444433  78999999999965668999999999999998742   222222378888999999997


Q ss_pred             CCCCceeecccCCCceeEEEeeCCCcEEEEEEecCccccccccccccCCCceeEEEeeCCCCCCccEEEEEecCCeEEEE
Q 022111          161 MAPGALVGLGLLDPVQKLASCGCDNTVKVWKMYNGIWKMDCFPALQMHSDWVRSVAWAPNLGLPKSTIASASQDGTVVIW  240 (302)
Q Consensus       161 ~~~~~~~~~~~~~~~~~l~s~~~D~~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~l~s~s~D~~i~iw  240 (302)
                      +              .++++|+.|+.+.+||++.+.    +++. -+|...|++++|+|+     .+.+....+..|+||
T Consensus       204 G--------------slcasGgkdg~~~LwdL~~~k----~lys-l~a~~~v~sl~fspn-----rywL~~at~~sIkIw  259 (315)
T KOG0279|consen  204 G--------------SLCASGGKDGEAMLWDLNEGK----NLYS-LEAFDIVNSLCFSPN-----RYWLCAATATSIKIW  259 (315)
T ss_pred             C--------------CEEecCCCCceEEEEEccCCc----eeEe-ccCCCeEeeEEecCC-----ceeEeeccCCceEEE
Confidence            4              789999999999999999873    3344 358889999999998     455566667779999


Q ss_pred             EeccCCcceeeeeeccC-------CC-cEEEEEEccCCCEEEEecCC-ceEEeeec
Q 022111          241 TCAKEGEQWEGRVLKDF-------KT-PVWSVSWSLTGNLLAVADAN-NVTLWKEA  287 (302)
Q Consensus       241 d~~~~~~~~~~~~~~~~-------~~-~v~~~~~spdg~~la~~~~d-~i~~w~~~  287 (302)
                      |+....-..  .+..++       .. ...+++||+||.-|-++..+ .|++|+..
T Consensus       260 dl~~~~~v~--~l~~d~~g~s~~~~~~~clslaws~dG~tLf~g~td~~irv~qv~  313 (315)
T KOG0279|consen  260 DLESKAVVE--ELKLDGIGPSSKAGDPICLSLAWSADGQTLFAGYTDNVIRVWQVA  313 (315)
T ss_pred             eccchhhhh--hccccccccccccCCcEEEEEEEcCCCcEEEeeecCCcEEEEEee
Confidence            987642110  111111       12 24689999999999999887 69999874

>KOG0286 consensus G-protein beta subunit [General function prediction only]

Probab=100.00  E-value=2.2e-36  Score=243.16  Aligned_cols=254  Identities=19%  Similarity=0.326  Sum_probs=208.4

Q ss_pred             CCCcccccccccceeEEEEccCCCEEEEeeCCCcEEEEeecCCCceEEEEecCcccCeEEEEeeCCCCCCEEEEEeCCCe
Q 022111            1 MPAQKIETGHEDTVHDVAMDFYGKRLATASSDSSIKIIGLSNSASQHLATLKGHRGPVWQVAWAHPKFGSILASCSYDGQ   80 (302)
Q Consensus         1 ~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~s~D~~   80 (302)
                      |..++++.||...|+++.|++|.++|+|++.||.+.|||.-+....+  .+.--+.-|-..+|+|.  |+.+|.|+-|..
T Consensus        45 ~~~rr~LkGH~~Ki~~~~ws~Dsr~ivSaSqDGklIvWDs~TtnK~h--aipl~s~WVMtCA~sPS--g~~VAcGGLdN~  120 (343)
T KOG0286|consen   45 MRTRRTLKGHLNKIYAMDWSTDSRRIVSASQDGKLIVWDSFTTNKVH--AIPLPSSWVMTCAYSPS--GNFVACGGLDNK  120 (343)
T ss_pred             eeeEEEecccccceeeeEecCCcCeEEeeccCCeEEEEEccccccee--EEecCceeEEEEEECCC--CCeEEecCcCce
Confidence            45567899999999999999999999999999999999975543333  34445667888999864  899999999999


Q ss_pred             EEEEEcCCC--C-ceeEEEEecCCCCCeeEEEecCCCCCcEEEEEecCCcEEEEEecCCCCeeeeeecccCCCCeEEEEe
Q 022111           81 VIIWKEGNQ--N-DWTQAHTFNDHKSSVNSIAWAPHELGLSLACGSSDGNISVFTATADGGWDTTRIDQAHPVGVTSVSW  157 (302)
Q Consensus        81 i~iwd~~~~--~-~~~~~~~~~~h~~~i~~l~~~pd~~~~~l~sg~~d~~v~~~~~~~~~~~~~~~~~~~h~~~v~~~~~  157 (302)
                      +.||++...  . .......+.+|.+.+.|+.|-+|  + .|+|++.|.++.+||++++  .....+. +|...|-++..
T Consensus       121 Csiy~ls~~d~~g~~~v~r~l~gHtgylScC~f~dD--~-~ilT~SGD~TCalWDie~g--~~~~~f~-GH~gDV~slsl  194 (343)
T KOG0286|consen  121 CSIYPLSTRDAEGNVRVSRELAGHTGYLSCCRFLDD--N-HILTGSGDMTCALWDIETG--QQTQVFH-GHTGDVMSLSL  194 (343)
T ss_pred             eEEEecccccccccceeeeeecCccceeEEEEEcCC--C-ceEecCCCceEEEEEcccc--eEEEEec-CCcccEEEEec
Confidence            999998633  1 11234568899999999999875  2 6999999999999999865  3344554 89999999999


Q ss_pred             CCCCCCCceeecccCCCceeEEEeeCCCcEEEEEEecCccccccccccccCCCceeEEEeeCCCCCCccEEEEEecCCeE
Q 022111          158 APAMAPGALVGLGLLDPVQKLASCGCDNTVKVWKMYNGIWKMDCFPALQMHSDWVRSVAWAPNLGLPKSTIASASQDGTV  237 (302)
Q Consensus       158 ~~~~~~~~~~~~~~~~~~~~l~s~~~D~~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~l~s~s~D~~i  237 (302)
                      +|..             ++.++||+.|++.+|||++.+    .+.++|.||++-|++|+|.|++    .-|++||+|+++
T Consensus       195 ~p~~-------------~ntFvSg~cD~~aklWD~R~~----~c~qtF~ghesDINsv~ffP~G----~afatGSDD~tc  253 (343)
T KOG0286|consen  195 SPSD-------------GNTFVSGGCDKSAKLWDVRSG----QCVQTFEGHESDINSVRFFPSG----DAFATGSDDATC  253 (343)
T ss_pred             CCCC-------------CCeEEecccccceeeeeccCc----ceeEeecccccccceEEEccCC----CeeeecCCCcee
Confidence            8842             478999999999999999987    5788999999999999999996    779999999999


Q ss_pred             EEEEeccCCcceeeee-eccCCCcEEEEEEccCCCEEEEecCC-ceEEeeec
Q 022111          238 VIWTCAKEGEQWEGRV-LKDFKTPVWSVSWSLTGNLLAVADAN-NVTLWKEA  287 (302)
Q Consensus       238 ~iwd~~~~~~~~~~~~-~~~~~~~v~~~~~spdg~~la~~~~d-~i~~w~~~  287 (302)
                      |+||+|...+.  ... ......+|.+++||..|++|-+|..| ++.+||.-
T Consensus       254 RlyDlRaD~~~--a~ys~~~~~~gitSv~FS~SGRlLfagy~d~~c~vWDtl  303 (343)
T KOG0286|consen  254 RLYDLRADQEL--AVYSHDSIICGITSVAFSKSGRLLFAGYDDFTCNVWDTL  303 (343)
T ss_pred             EEEeecCCcEE--eeeccCcccCCceeEEEcccccEEEeeecCCceeEeecc
Confidence            99999864221  111 12224579999999999999998888 89999964

>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]

Probab=100.00  E-value=4.3e-36  Score=269.10  Aligned_cols=205  Identities=26%  Similarity=0.450  Sum_probs=181.7

Q ss_pred             cccccccceeEEEEccCCCEEEEeeCCCcEEEEeecCCCceEEEEecCcccCeEEEEeeCCCCCCEEEEEeCCCeEEEEE
Q 022111            6 IETGHEDTVHDVAMDFYGKRLATASSDSSIKIIGLSNSASQHLATLKGHRGPVWQVAWAHPKFGSILASCSYDGQVIIWK   85 (302)
Q Consensus         6 ~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~s~D~~i~iwd   85 (302)
                      ++.||.++|+.++|+|+.++|+++|.|++||||.+.+.  .++...+||..+|+.++|+|-  |-++||+|.|++.++|.
T Consensus       446 ~L~GH~GPVyg~sFsPd~rfLlScSED~svRLWsl~t~--s~~V~y~GH~~PVwdV~F~P~--GyYFatas~D~tArLWs  521 (707)
T KOG0263|consen  446 TLYGHSGPVYGCSFSPDRRFLLSCSEDSSVRLWSLDTW--SCLVIYKGHLAPVWDVQFAPR--GYYFATASHDQTARLWS  521 (707)
T ss_pred             EeecCCCceeeeeecccccceeeccCCcceeeeecccc--eeEEEecCCCcceeeEEecCC--ceEEEecCCCceeeeee
Confidence            46799999999999999999999999999999999763  456677899999999999853  89999999999999998


Q ss_pred             cCCCCceeEEEEecCCCCCeeEEEecCCCCCcEEEEEecCCcEEEEEecCCCCeeeeeecccCCCCeEEEEeCCCCCCCc
Q 022111           86 EGNQNDWTQAHTFNDHKSSVNSIAWAPHELGLSLACGSSDGNISVFTATADGGWDTTRIDQAHPVGVTSVSWAPAMAPGA  165 (302)
Q Consensus        86 ~~~~~~~~~~~~~~~h~~~i~~l~~~pd~~~~~l~sg~~d~~v~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~  165 (302)
                      ....   .+...|.+|..-|.|+.|+|+  ..++++||.|.+|++||+.++....  .+ .+|..+|.+++|+|.     
T Consensus       522 ~d~~---~PlRifaghlsDV~cv~FHPN--s~Y~aTGSsD~tVRlWDv~~G~~VR--iF-~GH~~~V~al~~Sp~-----  588 (707)
T KOG0263|consen  522 TDHN---KPLRIFAGHLSDVDCVSFHPN--SNYVATGSSDRTVRLWDVSTGNSVR--IF-TGHKGPVTALAFSPC-----  588 (707)
T ss_pred             cccC---CchhhhcccccccceEEECCc--ccccccCCCCceEEEEEcCCCcEEE--Ee-cCCCCceEEEEEcCC-----
Confidence            7543   467788999999999999998  4599999999999999998765543  33 389999999999996     


Q ss_pred             eeecccCCCceeEEEeeCCCcEEEEEEecCccccccccccccCCCceeEEEeeCCCCCCccEEEEEecCCeEEEEEecc
Q 022111          166 LVGLGLLDPVQKLASCGCDNTVKVWKMYNGIWKMDCFPALQMHSDWVRSVAWAPNLGLPKSTIASASQDGTVVIWTCAK  244 (302)
Q Consensus       166 ~~~~~~~~~~~~l~s~~~D~~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~l~s~s~D~~i~iwd~~~  244 (302)
                               |.+|+||+.|+.|++||+.++    ..+..+.+|++.|.++.|+.++    ..||+|+.|.+|++||+..
T Consensus       589 ---------Gr~LaSg~ed~~I~iWDl~~~----~~v~~l~~Ht~ti~SlsFS~dg----~vLasgg~DnsV~lWD~~~  650 (707)
T KOG0263|consen  589 ---------GRYLASGDEDGLIKIWDLANG----SLVKQLKGHTGTIYSLSFSRDG----NVLASGGADNSVRLWDLTK  650 (707)
T ss_pred             ---------CceEeecccCCcEEEEEcCCC----cchhhhhcccCceeEEEEecCC----CEEEecCCCCeEEEEEchh
Confidence                     489999999999999999887    4556788999999999999995    7899999999999999865

>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]

Probab=100.00  E-value=7.6e-35  Score=229.62  Aligned_cols=249  Identities=23%  Similarity=0.373  Sum_probs=200.2

Q ss_pred             ccceeEEEEccCCCEEEEeeCCCcEEEEeecCCCceEEEEecCcccCeEEEEeeCCCCCCEEEEEeCCCeEEEEEcCCCC
Q 022111           11 EDTVHDVAMDFYGKRLATASSDSSIKIIGLSNSASQHLATLKGHRGPVWQVAWAHPKFGSILASCSYDGQVIIWKEGNQN   90 (302)
Q Consensus        11 ~~~v~~~~~s~~~~~l~s~~~d~~v~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~s~D~~i~iwd~~~~~   90 (302)
                      ..-|+.+.+.||++.||+++ ...||+||+.+....++.++.+|...|..+.|..  +|+.++|||+||++||||++.. 
T Consensus        40 dsqVNrLeiTpdk~~LAaa~-~qhvRlyD~~S~np~Pv~t~e~h~kNVtaVgF~~--dgrWMyTgseDgt~kIWdlR~~-  115 (311)
T KOG0315|consen   40 DSQVNRLEITPDKKDLAAAG-NQHVRLYDLNSNNPNPVATFEGHTKNVTAVGFQC--DGRWMYTGSEDGTVKIWDLRSL-  115 (311)
T ss_pred             ccceeeEEEcCCcchhhhcc-CCeeEEEEccCCCCCceeEEeccCCceEEEEEee--cCeEEEecCCCceEEEEeccCc-
Confidence            45789999999999999876 5679999998766557889999999999999975  4999999999999999999874 


Q ss_pred             ceeEEEEecCCCCCeeEEEecCCCCCcEEEEEecCCcEEEEEecCCCCeeeeeecccCCCCeEEEEeCCCCCCCceeecc
Q 022111           91 DWTQAHTFNDHKSSVNSIAWAPHELGLSLACGSSDGNISVFTATADGGWDTTRIDQAHPVGVTSVSWAPAMAPGALVGLG  170 (302)
Q Consensus        91 ~~~~~~~~~~h~~~i~~l~~~pd~~~~~l~sg~~d~~v~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~  170 (302)
                         ..+....|..+|+++..+|++.  .|++|..++.|++||+......  ..+.......+.++...|+          
T Consensus       116 ---~~qR~~~~~spVn~vvlhpnQt--eLis~dqsg~irvWDl~~~~c~--~~liPe~~~~i~sl~v~~d----------  178 (311)
T KOG0315|consen  116 ---SCQRNYQHNSPVNTVVLHPNQT--ELISGDQSGNIRVWDLGENSCT--HELIPEDDTSIQSLTVMPD----------  178 (311)
T ss_pred             ---ccchhccCCCCcceEEecCCcc--eEEeecCCCcEEEEEccCCccc--cccCCCCCcceeeEEEcCC----------
Confidence               2333344889999999999853  7999999999999999864321  1111122345777776665          


Q ss_pred             cCCCceeEEEeeCCCcEEEEEEecCcc--ccccccccccCCCceeEEEeeCCCCCCccEEEEEecCCeEEEEEeccCCcc
Q 022111          171 LLDPVQKLASCGCDNTVKVWKMYNGIW--KMDCFPALQMHSDWVRSVAWAPNLGLPKSTIASASQDGTVVIWTCAKEGEQ  248 (302)
Q Consensus       171 ~~~~~~~l~s~~~D~~v~iwd~~~~~~--~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~l~s~s~D~~i~iwd~~~~~~~  248 (302)
                          +..|+.+...|+.++|++.....  .+..+..+..|...|..+.+|||+    ++||++|.|++++||+.+.-  .
T Consensus       179 ----gsml~a~nnkG~cyvW~l~~~~~~s~l~P~~k~~ah~~~il~C~lSPd~----k~lat~ssdktv~iwn~~~~--~  248 (311)
T KOG0315|consen  179 ----GSMLAAANNKGNCYVWRLLNHQTASELEPVHKFQAHNGHILRCLLSPDV----KYLATCSSDKTVKIWNTDDF--F  248 (311)
T ss_pred             ----CcEEEEecCCccEEEEEccCCCccccceEhhheecccceEEEEEECCCC----cEEEeecCCceEEEEecCCc--e
Confidence                47888899999999999976432  234456688999999999999996    78999999999999998753  1


Q ss_pred             eeeeeeccCCCcEEEEEEccCCCEEEEecCC-ceEEeeecCCc
Q 022111          249 WEGRVLKDFKTPVWSVSWSLTGNLLAVADAN-NVTLWKEAVDG  290 (302)
Q Consensus       249 ~~~~~~~~~~~~v~~~~~spdg~~la~~~~d-~i~~w~~~~~~  290 (302)
                      .....+.++...+|.++||.||+||++|++| .+++|++...+
T Consensus       249 kle~~l~gh~rWvWdc~FS~dg~YlvTassd~~~rlW~~~~~k  291 (311)
T KOG0315|consen  249 KLELVLTGHQRWVWDCAFSADGEYLVTASSDHTARLWDLSAGK  291 (311)
T ss_pred             eeEEEeecCCceEEeeeeccCccEEEecCCCCceeecccccCc
Confidence            1223457788899999999999999999999 79999986544

>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]

Probab=100.00  E-value=6.4e-35  Score=247.92  Aligned_cols=242  Identities=29%  Similarity=0.489  Sum_probs=205.4

Q ss_pred             cceeEEEEccCCCEEEEeeCCCcEEEEeecCCCceEEEEecCcccCeEEEEeeCCCCCCEEEEEeCCCeEEEEEcCCCCc
Q 022111           12 DTVHDVAMDFYGKRLATASSDSSIKIIGLSNSASQHLATLKGHRGPVWQVAWAHPKFGSILASCSYDGQVIIWKEGNQND   91 (302)
Q Consensus        12 ~~v~~~~~s~~~~~l~s~~~d~~v~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~s~D~~i~iwd~~~~~~   91 (302)
                      ..|++++|+.+|..||+|+.||.+|||+...   ..+.++.-|+++|.++.|+.  .|++|++++.|+++.+||..++  
T Consensus       236 kdVT~L~Wn~~G~~LatG~~~G~~riw~~~G---~l~~tl~~HkgPI~slKWnk--~G~yilS~~vD~ttilwd~~~g--  308 (524)
T KOG0273|consen  236 KDVTSLDWNNDGTLLATGSEDGEARIWNKDG---NLISTLGQHKGPIFSLKWNK--KGTYILSGGVDGTTILWDAHTG--  308 (524)
T ss_pred             CCcceEEecCCCCeEEEeecCcEEEEEecCc---hhhhhhhccCCceEEEEEcC--CCCEEEeccCCccEEEEeccCc--
Confidence            5799999999999999999999999999754   45677888999999999974  4899999999999999998665  


Q ss_pred             eeEEEEecCCCCCeeEEEecCCCCCcEEEEEecCCcEEEEEecCCCCeeeeeecccCCCCeEEEEeCCCCCCCceeeccc
Q 022111           92 WTQAHTFNDHKSSVNSIAWAPHELGLSLACGSSDGNISVFTATADGGWDTTRIDQAHPVGVTSVSWAPAMAPGALVGLGL  171 (302)
Q Consensus        92 ~~~~~~~~~h~~~i~~l~~~pd~~~~~l~sg~~d~~v~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~  171 (302)
                       +..+.+..|..+-..+.|-.+   ..+++++.|+.|++|.+....+.  ..+. +|..+|.++.|+|.+          
T Consensus       309 -~~~q~f~~~s~~~lDVdW~~~---~~F~ts~td~~i~V~kv~~~~P~--~t~~-GH~g~V~alk~n~tg----------  371 (524)
T KOG0273|consen  309 -TVKQQFEFHSAPALDVDWQSN---DEFATSSTDGCIHVCKVGEDRPV--KTFI-GHHGEVNALKWNPTG----------  371 (524)
T ss_pred             -eEEEeeeeccCCccceEEecC---ceEeecCCCceEEEEEecCCCcc--eeee-cccCceEEEEECCCC----------
Confidence             355677888888788999754   36999999999999998765443  2333 799999999999974          


Q ss_pred             CCCceeEEEeeCCCcEEEEEEecCccccccccccccCCCceeEEEeeCCCCC-----CccEEEEEecCCeEEEEEeccCC
Q 022111          172 LDPVQKLASCGCDNTVKVWKMYNGIWKMDCFPALQMHSDWVRSVAWAPNLGL-----PKSTIASASQDGTVVIWTCAKEG  246 (302)
Q Consensus       172 ~~~~~~l~s~~~D~~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~-----~~~~l~s~s~D~~i~iwd~~~~~  246 (302)
                          .+|+||+.|++++||.+...    .+...+.+|...|..+.|+|++..     .+..+++++.|+++++||+....
T Consensus       372 ----~LLaS~SdD~TlkiWs~~~~----~~~~~l~~Hskei~t~~wsp~g~v~~n~~~~~~l~sas~dstV~lwdv~~gv  443 (524)
T KOG0273|consen  372 ----SLLASCSDDGTLKIWSMGQS----NSVHDLQAHSKEIYTIKWSPTGPVTSNPNMNLMLASASFDSTVKLWDVESGV  443 (524)
T ss_pred             ----ceEEEecCCCeeEeeecCCC----cchhhhhhhccceeeEeecCCCCccCCCcCCceEEEeecCCeEEEEEccCCc
Confidence                79999999999999998765    467788999999999999998753     45789999999999999998642


Q ss_pred             cceeeeeeccCCCcEEEEEEccCCCEEEEecCC-ceEEeeecC
Q 022111          247 EQWEGRVLKDFKTPVWSVSWSLTGNLLAVADAN-NVTLWKEAV  288 (302)
Q Consensus       247 ~~~~~~~~~~~~~~v~~~~~spdg~~la~~~~d-~i~~w~~~~  288 (302)
                      .   .-.+.+|..+|++++|||+|++||+|+.| .|.+|....
T Consensus       444 ~---i~~f~kH~~pVysvafS~~g~ylAsGs~dg~V~iws~~~  483 (524)
T KOG0273|consen  444 P---IHTLMKHQEPVYSVAFSPNGRYLASGSLDGCVHIWSTKT  483 (524)
T ss_pred             e---eEeeccCCCceEEEEecCCCcEEEecCCCCeeEeccccc
Confidence            1   12346888999999999999999999999 699999764

>KOG0645 consensus WD40 repeat protein [General function prediction only]

Probab=100.00  E-value=3.1e-34  Score=228.63  Aligned_cols=249  Identities=29%  Similarity=0.529  Sum_probs=207.9

Q ss_pred             ccccccceeEEEEccCCCEEEEeeCCCcEEEEeecCCCceEEEEecCcccCeEEEEeeCCCCCCEEEEEeCCCeEEEEEc
Q 022111            7 ETGHEDTVHDVAMDFYGKRLATASSDSSIKIIGLSNSASQHLATLKGHRGPVWQVAWAHPKFGSILASCSYDGQVIIWKE   86 (302)
Q Consensus         7 ~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~s~D~~i~iwd~   86 (302)
                      ..+|+..|++++|+|.|++||+||-|.++-||.-.....+++.++.||+..|.+++|+++  |.+||+|+.|+.+=||.+
T Consensus        57 d~~hkrsVRsvAwsp~g~~La~aSFD~t~~Iw~k~~~efecv~~lEGHEnEVK~Vaws~s--G~~LATCSRDKSVWiWe~  134 (312)
T KOG0645|consen   57 DDGHKRSVRSVAWSPHGRYLASASFDATVVIWKKEDGEFECVATLEGHENEVKCVAWSAS--GNYLATCSRDKSVWIWEI  134 (312)
T ss_pred             cccchheeeeeeecCCCcEEEEeeccceEEEeecCCCceeEEeeeeccccceeEEEEcCC--CCEEEEeeCCCeEEEEEe
Confidence            458999999999999999999999999999998766667889999999999999999864  899999999999999999


Q ss_pred             CCCCceeEEEEecCCCCCeeEEEecCCCCCcEEEEEecCCcEEEEEecCCCCeeeeeecccCCCCeEEEEeCCCCCCCce
Q 022111           87 GNQNDWTQAHTFNDHKSSVNSIAWAPHELGLSLACGSSDGNISVFTATADGGWDTTRIDQAHPVGVTSVSWAPAMAPGAL  166 (302)
Q Consensus        87 ~~~~~~~~~~~~~~h~~~i~~l~~~pd~~~~~l~sg~~d~~v~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~  166 (302)
                      .......+...++.|..-|.-+.|+|..  .+|++++.|++|++|+-..+..|.......+|...|.++.|.+.      
T Consensus       135 deddEfec~aVL~~HtqDVK~V~WHPt~--dlL~S~SYDnTIk~~~~~~dddW~c~~tl~g~~~TVW~~~F~~~------  206 (312)
T KOG0645|consen  135 DEDDEFECIAVLQEHTQDVKHVIWHPTE--DLLFSCSYDNTIKVYRDEDDDDWECVQTLDGHENTVWSLAFDNI------  206 (312)
T ss_pred             cCCCcEEEEeeeccccccccEEEEcCCc--ceeEEeccCCeEEEEeecCCCCeeEEEEecCccceEEEEEecCC------
Confidence            8777788999999999999999999974  38999999999999987655567765544588889999999875      


Q ss_pred             eecccCCCceeEEEeeCCCcEEEEEEecCccccccccccccCCCceeEEEeeCCCCCCccEEEEEecCCeEEEEEeccCC
Q 022111          167 VGLGLLDPVQKLASCGCDNTVKVWKMYNGIWKMDCFPALQMHSDWVRSVAWAPNLGLPKSTIASASQDGTVVIWTCAKEG  246 (302)
Q Consensus       167 ~~~~~~~~~~~l~s~~~D~~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~l~s~s~D~~i~iwd~~~~~  246 (302)
                              |.+|++|+.|++++||......        ...|+..++.+.|. +     ..|+|++.|..|++|.-....
T Consensus       207 --------G~rl~s~sdD~tv~Iw~~~~~~--------~~~~sr~~Y~v~W~-~-----~~IaS~ggD~~i~lf~~s~~~  264 (312)
T KOG0645|consen  207 --------GSRLVSCSDDGTVSIWRLYTDL--------SGMHSRALYDVPWD-N-----GVIASGGGDDAIRLFKESDSP  264 (312)
T ss_pred             --------CceEEEecCCcceEeeeeccCc--------chhcccceEeeeec-c-----cceEeccCCCEEEEEEecCCC
Confidence                    4789999999999999876421        13478889999998 4     369999999999999865431


Q ss_pred             cc--ee--eeeeccCCCcEEEEEEccC-CCEEEEecCC-ceEEeeec
Q 022111          247 EQ--WE--GRVLKDFKTPVWSVSWSLT-GNLLAVADAN-NVTLWKEA  287 (302)
Q Consensus       247 ~~--~~--~~~~~~~~~~v~~~~~spd-g~~la~~~~d-~i~~w~~~  287 (302)
                      ..  +.  ......|+..|++++|+|. .++|+++++| .|++|...
T Consensus       265 d~p~~~l~~~~~~aHe~dVNsV~w~p~~~~~L~s~~DDG~v~~W~l~  311 (312)
T KOG0645|consen  265 DEPSWNLLAKKEGAHEVDVNSVQWNPKVSNRLASGGDDGIVNFWELE  311 (312)
T ss_pred             CCchHHHHHhhhcccccccceEEEcCCCCCceeecCCCceEEEEEec
Confidence            11  11  1112356678999999995 6888899888 69999853

>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]

Probab=100.00  E-value=4.3e-35  Score=236.54  Aligned_cols=248  Identities=25%  Similarity=0.417  Sum_probs=202.6

Q ss_pred             cccccccceeEEEEccCCCEEEEeeCCCcEEEEeecCCCceEEEEecCcccCeEEEEeeCCCCCCEEEEEeCCCeEEEEE
Q 022111            6 IETGHEDTVHDVAMDFYGKRLATASSDSSIKIIGLSNSASQHLATLKGHRGPVWQVAWAHPKFGSILASCSYDGQVIIWK   85 (302)
Q Consensus         6 ~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~s~D~~i~iwd   85 (302)
                      .+.||++.|+.+.|+|+|.+|||||.|..|.||++... .+...++++|+++|-.+.|..+  +..|++||.|++++.||
T Consensus        42 ~l~gh~geI~~~~F~P~gs~~aSgG~Dr~I~LWnv~gd-ceN~~~lkgHsgAVM~l~~~~d--~s~i~S~gtDk~v~~wD  118 (338)
T KOG0265|consen   42 LLPGHKGEIYTIKFHPDGSCFASGGSDRAIVLWNVYGD-CENFWVLKGHSGAVMELHGMRD--GSHILSCGTDKTVRGWD  118 (338)
T ss_pred             hcCCCcceEEEEEECCCCCeEeecCCcceEEEEecccc-ccceeeeccccceeEeeeeccC--CCEEEEecCCceEEEEe
Confidence            46799999999999999999999999999999997543 4566788999999999999764  78999999999999999


Q ss_pred             cCCCCceeEEEEecCCCCCeeEEEecCCCCC-cEEEEEecCCcEEEEEecCCCCeeeeeecccCCCCeEEEEeCCCCCCC
Q 022111           86 EGNQNDWTQAHTFNDHKSSVNSIAWAPHELG-LSLACGSSDGNISVFTATADGGWDTTRIDQAHPVGVTSVSWAPAMAPG  164 (302)
Q Consensus        86 ~~~~~~~~~~~~~~~h~~~i~~l~~~pd~~~-~~l~sg~~d~~v~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~  164 (302)
                      ++++.   ....+++|..-|+++.  |...| .++.+|++|++++|||+++.....+.    ....+++++.|..+    
T Consensus       119 ~~tG~---~~rk~k~h~~~vNs~~--p~rrg~~lv~SgsdD~t~kl~D~R~k~~~~t~----~~kyqltAv~f~d~----  185 (338)
T KOG0265|consen  119 AETGK---RIRKHKGHTSFVNSLD--PSRRGPQLVCSGSDDGTLKLWDIRKKEAIKTF----ENKYQLTAVGFKDT----  185 (338)
T ss_pred             cccce---eeehhccccceeeecC--ccccCCeEEEecCCCceEEEEeecccchhhcc----ccceeEEEEEeccc----
Confidence            98873   6778889999999987  44333 57889999999999999865433211    23456888888754    


Q ss_pred             ceeecccCCCceeEEEeeCCCcEEEEEEecCccccccccccccCCCceeEEEeeCCCCCCccEEEEEecCCeEEEEEecc
Q 022111          165 ALVGLGLLDPVQKLASCGCDNTVKVWKMYNGIWKMDCFPALQMHSDWVRSVAWAPNLGLPKSTIASASQDGTVVIWTCAK  244 (302)
Q Consensus       165 ~~~~~~~~~~~~~l~s~~~D~~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~l~s~s~D~~i~iwd~~~  244 (302)
                                +.++++|+-|+.|++||++.+    +....+.||.++|+.+..+|++    .++.+-++|.++++||++-
T Consensus       186 ----------s~qv~sggIdn~ikvWd~r~~----d~~~~lsGh~DtIt~lsls~~g----s~llsnsMd~tvrvwd~rp  247 (338)
T KOG0265|consen  186 ----------SDQVISGGIDNDIKVWDLRKN----DGLYTLSGHADTITGLSLSRYG----SFLLSNSMDNTVRVWDVRP  247 (338)
T ss_pred             ----------ccceeeccccCceeeeccccC----cceEEeecccCceeeEEeccCC----CccccccccceEEEEEecc
Confidence                      478999999999999999876    5678899999999999999986    7899999999999999974


Q ss_pred             CC-cceeeeee----ccCCCcEEEEEEccCCCEEEEecCC-ceEEeeec
Q 022111          245 EG-EQWEGRVL----KDFKTPVWSVSWSLTGNLLAVADAN-NVTLWKEA  287 (302)
Q Consensus       245 ~~-~~~~~~~~----~~~~~~v~~~~~spdg~~la~~~~d-~i~~w~~~  287 (302)
                      -. ..+...+.    ..++.....++|||+++.+.+++.| .+++|+..
T Consensus       248 ~~p~~R~v~if~g~~hnfeknlL~cswsp~~~~i~ags~dr~vyvwd~~  296 (338)
T KOG0265|consen  248 FAPSQRCVKIFQGHIHNFEKNLLKCSWSPNGTKITAGSADRFVYVWDTT  296 (338)
T ss_pred             cCCCCceEEEeecchhhhhhhcceeeccCCCCccccccccceEEEeecc
Confidence            21 11111111    2334457789999999999999999 79999975

>KOG0295 consensus WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=1.7e-35  Score=244.32  Aligned_cols=258  Identities=27%  Similarity=0.419  Sum_probs=217.0

Q ss_pred             cccccccceeEEEEccCCCEEEEeeCCCcEEEEeecCCCceEEEEecCcccCeEEEEeeCCCCCCEEEEEeCCCeEEEEE
Q 022111            6 IETGHEDTVHDVAMDFYGKRLATASSDSSIKIIGLSNSASQHLATLKGHRGPVWQVAWAHPKFGSILASCSYDGQVIIWK   85 (302)
Q Consensus         6 ~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~s~D~~i~iwd   85 (302)
                      .+.||++.|.+++|+..|++||+++.|-.+++||+... .+++..+.+|+..|.+++|-|.  |++|+||+.|.+|+.|+
T Consensus       145 ~LrGHt~sv~di~~~a~Gk~l~tcSsDl~~~LWd~~~~-~~c~ks~~gh~h~vS~V~f~P~--gd~ilS~srD~tik~We  221 (406)
T KOG0295|consen  145 SLRGHTDSVFDISFDASGKYLATCSSDLSAKLWDFDTF-FRCIKSLIGHEHGVSSVFFLPL--GDHILSCSRDNTIKAWE  221 (406)
T ss_pred             hhhccccceeEEEEecCccEEEecCCccchhheeHHHH-HHHHHHhcCcccceeeEEEEec--CCeeeecccccceeEEe
Confidence            46799999999999999999999999999999998653 4567888999999999999764  79999999999999999


Q ss_pred             cCCCCceeEEEEecCCCCCeeEEEecCCCCCcEEEEEecCCcEEEEEecCCCCeeeeeecccCCCCeEEEEeCCCCCCCc
Q 022111           86 EGNQNDWTQAHTFNDHKSSVNSIAWAPHELGLSLACGSSDGNISVFTATADGGWDTTRIDQAHPVGVTSVSWAPAMAPGA  165 (302)
Q Consensus        86 ~~~~~~~~~~~~~~~h~~~i~~l~~~pd~~~~~l~sg~~d~~v~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~  165 (302)
                      +.++   -+++++.+|.+-|.-++.+.|  |.++|+|+.|.++++|-+.+....  ..++ .|+.+|.+++|.|......
T Consensus       222 ~~tg---~cv~t~~~h~ewvr~v~v~~D--Gti~As~s~dqtl~vW~~~t~~~k--~~lR-~hEh~vEci~wap~~~~~~  293 (406)
T KOG0295|consen  222 CDTG---YCVKTFPGHSEWVRMVRVNQD--GTIIASCSNDQTLRVWVVATKQCK--AELR-EHEHPVECIAWAPESSYPS  293 (406)
T ss_pred             cccc---eeEEeccCchHhEEEEEecCC--eeEEEecCCCceEEEEEeccchhh--hhhh-ccccceEEEEecccccCcc
Confidence            9876   488999999999999999877  889999999999999987654221  2333 7888999999998654333


Q ss_pred             ee-ecccCCCceeEEEeeCCCcEEEEEEecCccccccccccccCCCceeEEEeeCCCCCCccEEEEEecCCeEEEEEecc
Q 022111          166 LV-GLGLLDPVQKLASCGCDNTVKVWKMYNGIWKMDCFPALQMHSDWVRSVAWAPNLGLPKSTIASASQDGTVVIWTCAK  244 (302)
Q Consensus       166 ~~-~~~~~~~~~~l~s~~~D~~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~l~s~s~D~~i~iwd~~~  244 (302)
                      +. +.+..+.+..+++++.|++||+||+.++    .|+.++.||.+||.+++|+|-|    ++|+|+.+|+++|+||++.
T Consensus       294 i~~at~~~~~~~~l~s~SrDktIk~wdv~tg----~cL~tL~ghdnwVr~~af~p~G----kyi~ScaDDktlrvwdl~~  365 (406)
T KOG0295|consen  294 ISEATGSTNGGQVLGSGSRDKTIKIWDVSTG----MCLFTLVGHDNWVRGVAFSPGG----KYILSCADDKTLRVWDLKN  365 (406)
T ss_pred             hhhccCCCCCccEEEeecccceEEEEeccCC----eEEEEEecccceeeeeEEcCCC----eEEEEEecCCcEEEEEecc
Confidence            22 2233344678999999999999999988    6888999999999999999985    8899999999999999975


Q ss_pred             CCcceeeeeeccCCCcEEEEEEccCCCEEEEecCC-ceEEee
Q 022111          245 EGEQWEGRVLKDFKTPVWSVSWSLTGNLLAVADAN-NVTLWK  285 (302)
Q Consensus       245 ~~~~~~~~~~~~~~~~v~~~~~spdg~~la~~~~d-~i~~w~  285 (302)
                      .   .....+..|..-+.++.|.-+-.++++|+=| .+++|.
T Consensus       366 ~---~cmk~~~ah~hfvt~lDfh~~~p~VvTGsVdqt~KvwE  404 (406)
T KOG0295|consen  366 L---QCMKTLEAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWE  404 (406)
T ss_pred             c---eeeeccCCCcceeEEEecCCCCceEEeccccceeeeee
Confidence            3   2233445666779999999888899999888 899995

>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=2.3e-33  Score=227.31  Aligned_cols=285  Identities=34%  Similarity=0.663  Sum_probs=220.7

Q ss_pred             cccccccccceeEEEEccCCCEEEEeeCCCcEEEEeecCC--CceEEEEecCcccCeEEEEeeCCCCCCEEEEEeCCCeE
Q 022111            4 QKIETGHEDTVHDVAMDFYGKRLATASSDSSIKIIGLSNS--ASQHLATLKGHRGPVWQVAWAHPKFGSILASCSYDGQV   81 (302)
Q Consensus         4 ~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~lw~~~~~--~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~s~D~~i   81 (302)
                      +-+..+|.+-|+++.|++.|+++|+|+.|++|+|||....  +..+-..-+.|++.|..|.|.+|..|+.||+||.|+++
T Consensus         6 ~pi~s~h~DlihdVs~D~~GRRmAtCSsDq~vkI~d~~~~s~~W~~Ts~Wrah~~Si~rV~WAhPEfGqvvA~cS~Drtv   85 (361)
T KOG2445|consen    6 APIDSGHKDLIHDVSFDFYGRRMATCSSDQTVKIWDSTSDSGTWSCTSSWRAHDGSIWRVVWAHPEFGQVVATCSYDRTV   85 (361)
T ss_pred             cccccCCcceeeeeeecccCceeeeccCCCcEEEEeccCCCCceEEeeeEEecCCcEEEEEecCccccceEEEEecCCce
Confidence            3346689999999999999999999999999999996433  34445567889999999999999899999999999999


Q ss_pred             EEEEcC------CCCceeEEEEecCCCCCeeEEEecCCCCCcEEEEEecCCcEEEEEecCCCC---eee-eee------c
Q 022111           82 IIWKEG------NQNDWTQAHTFNDHKSSVNSIAWAPHELGLSLACGSSDGNISVFTATADGG---WDT-TRI------D  145 (302)
Q Consensus        82 ~iwd~~------~~~~~~~~~~~~~h~~~i~~l~~~pd~~~~~l~sg~~d~~v~~~~~~~~~~---~~~-~~~------~  145 (302)
                      .||.-.      .+.+|....++......|+++.|.|..-|..+|+++.||.+|||+.-....   |.+ .++      .
T Consensus        86 ~iWEE~~~~~~~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs~W~Lq~Ei~~~~~pp  165 (361)
T KOG2445|consen   86 SIWEEQEKSEEAHGRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNLSQWTLQHEIQNVIDPP  165 (361)
T ss_pred             eeeeecccccccccceeEEEEEeecCCcceeEEEecchhcceEEEEeccCcEEEEEecCCccccccchhhhhhhhccCCc
Confidence            999741      113566677788888999999999998899999999999999998754322   221 111      1


Q ss_pred             ccCCCCeEEEEeCCCCCCCceeecccCCCceeEEEeeCC-----CcEEEEEEecCccccccccccccCCCceeEEEeeCC
Q 022111          146 QAHPVGVTSVSWAPAMAPGALVGLGLLDPVQKLASCGCD-----NTVKVWKMYNGIWKMDCFPALQMHSDWVRSVAWAPN  220 (302)
Q Consensus       146 ~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~D-----~~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~~~p~  220 (302)
                      ..+.....|+.|+|....           ...||.|+.+     +.++||.-.++..+...+.++.+|+++|++|+|.|+
T Consensus       166 ~~~~~~~~CvsWn~sr~~-----------~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva~L~d~~dpI~di~wAPn  234 (361)
T KOG2445|consen  166 GKNKQPCFCVSWNPSRMH-----------EPLIAVGSDEDAPHLNKVKIYEYNENGRKWLKVAELPDHTDPIRDISWAPN  234 (361)
T ss_pred             ccccCcceEEeecccccc-----------CceEEEEcccCCccccceEEEEecCCcceeeeehhcCCCCCcceeeeeccc
Confidence            124556789999875321           1345555544     378999876654333445677899999999999998


Q ss_pred             CCCCccEEEEEecCCeEEEEEeccCC-----------c---ce---eeeeeccCCCcEEEEEEccCCCEEEEecCC-ceE
Q 022111          221 LGLPKSTIASASQDGTVVIWTCAKEG-----------E---QW---EGRVLKDFKTPVWSVSWSLTGNLLAVADAN-NVT  282 (302)
Q Consensus       221 ~~~~~~~l~s~s~D~~i~iwd~~~~~-----------~---~~---~~~~~~~~~~~v~~~~~spdg~~la~~~~d-~i~  282 (302)
                      -+.....||+++.|| |+||+++...           .   ..   ....+.+|.++||.++|+-.|.+|+++++| .++
T Consensus       235 ~Gr~y~~lAvA~kDg-v~I~~v~~~~s~i~~ee~~~~~~~~~l~v~~vs~~~~H~~~VWrv~wNmtGtiLsStGdDG~VR  313 (361)
T KOG2445|consen  235 IGRSYHLLAVATKDG-VRIFKVKVARSAIEEEEVLAPDLMTDLPVEKVSELDDHNGEVWRVRWNMTGTILSSTGDDGCVR  313 (361)
T ss_pred             cCCceeeEEEeecCc-EEEEEEeeccchhhhhcccCCCCccccceEEeeeccCCCCceEEEEEeeeeeEEeecCCCceee
Confidence            766667899999999 9999997310           0   00   011235788899999999999999999999 699


Q ss_pred             EeeecCCceEEEeeecCC
Q 022111          283 LWKEAVDGEWQQVSVVEP  300 (302)
Q Consensus       283 ~w~~~~~~~~~~~~~~~~  300 (302)
                      +|+..-+.+|.+..++.-
T Consensus       314 LWkany~n~~kC~sv~~~  331 (361)
T KOG2445|consen  314 LWKANYNNLWKCTSVLKA  331 (361)
T ss_pred             ehhhhhhhhheeeeEEec
Confidence            999988889998887653

>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]

Probab=100.00  E-value=1.4e-35  Score=248.00  Aligned_cols=249  Identities=22%  Similarity=0.412  Sum_probs=207.2

Q ss_pred             cccccccceeEEEEccCCCEEEEeeCCCcEEEEeecCCCceEEEEecCcc-cCeEEEEeeCCCCCCEEEEEeCCCeEEEE
Q 022111            6 IETGHEDTVHDVAMDFYGKRLATASSDSSIKIIGLSNSASQHLATLKGHR-GPVWQVAWAHPKFGSILASCSYDGQVIIW   84 (302)
Q Consensus         6 ~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~lw~~~~~~~~~~~~~~~h~-~~v~~v~~~~~~~~~~l~s~s~D~~i~iw   84 (302)
                      +++.|..+|+++.|+.++.+++||+.+|.|++|+..-.   .+..+.+|. ..|++++|+|.  ...++|||.|++|+||
T Consensus       133 ilQaHDs~Vr~m~ws~~g~wmiSgD~gG~iKyWqpnmn---nVk~~~ahh~eaIRdlafSpn--DskF~t~SdDg~ikiW  207 (464)
T KOG0284|consen  133 ILQAHDSPVRTMKWSHNGTWMISGDKGGMIKYWQPNMN---NVKIIQAHHAEAIRDLAFSPN--DSKFLTCSDDGTIKIW  207 (464)
T ss_pred             HhhhhcccceeEEEccCCCEEEEcCCCceEEecccchh---hhHHhhHhhhhhhheeccCCC--CceeEEecCCCeEEEE
Confidence            46789999999999999999999999999999987532   344555655 88999999874  4678999999999999


Q ss_pred             EcCCCCceeEEEEecCCCCCeeEEEecCCCCCcEEEEEecCCcEEEEEecCCCCeeeeeecccCCCCeEEEEeCCCCCCC
Q 022111           85 KEGNQNDWTQAHTFNDHKSSVNSIAWAPHELGLSLACGSSDGNISVFTATADGGWDTTRIDQAHPVGVTSVSWAPAMAPG  164 (302)
Q Consensus        85 d~~~~~~~~~~~~~~~h~~~i~~l~~~pd~~~~~l~sg~~d~~v~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~  164 (302)
                      |.....   +...+.+|.--|++++|+|..  -+|++|+.|+.|++||-+++.+..  .+ ..|...|..+.|+|++   
T Consensus       208 df~~~k---ee~vL~GHgwdVksvdWHP~k--gLiasgskDnlVKlWDprSg~cl~--tl-h~HKntVl~~~f~~n~---  276 (464)
T KOG0284|consen  208 DFRMPK---EERVLRGHGWDVKSVDWHPTK--GLIASGSKDNLVKLWDPRSGSCLA--TL-HGHKNTVLAVKFNPNG---  276 (464)
T ss_pred             eccCCc---hhheeccCCCCcceeccCCcc--ceeEEccCCceeEeecCCCcchhh--hh-hhccceEEEEEEcCCC---
Confidence            986553   345678999999999999984  379999999999999988765432  23 3789999999999864   


Q ss_pred             ceeecccCCCceeEEEeeCCCcEEEEEEecCccccccccccccCCCceeEEEeeCCCCCCccEEEEEecCCeEEEEEecc
Q 022111          165 ALVGLGLLDPVQKLASCGCDNTVKVWKMYNGIWKMDCFPALQMHSDWVRSVAWAPNLGLPKSTIASASQDGTVVIWTCAK  244 (302)
Q Consensus       165 ~~~~~~~~~~~~~l~s~~~D~~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~l~s~s~D~~i~iwd~~~  244 (302)
                                 .+|+|+|.|..++++|++.    ++.+.++.+|+..|+++.|+|-.   +..|++|+.||.|..|.+..
T Consensus       277 -----------N~Llt~skD~~~kv~DiR~----mkEl~~~r~Hkkdv~~~~WhP~~---~~lftsgg~Dgsvvh~~v~~  338 (464)
T KOG0284|consen  277 -----------NWLLTGSKDQSCKVFDIRT----MKELFTYRGHKKDVTSLTWHPLN---ESLFTSGGSDGSVVHWVVGL  338 (464)
T ss_pred             -----------CeeEEccCCceEEEEehhH----hHHHHHhhcchhhheeecccccc---ccceeeccCCCceEEEeccc
Confidence                       7999999999999999984    35677889999999999999963   57899999999999999873


Q ss_pred             CCcceeeeeeccCCCcEEEEEEccCCCEEEEecCC-ceEEeeecCCc
Q 022111          245 EGEQWEGRVLKDFKTPVWSVSWSLTGNLLAVADAN-NVTLWKEAVDG  290 (302)
Q Consensus       245 ~~~~~~~~~~~~~~~~v~~~~~spdg~~la~~~~d-~i~~w~~~~~~  290 (302)
                      +..  ...+...|...||+++|+|=|.+|++|+.| ++++|..+..+
T Consensus       339 ~~p--~~~i~~AHd~~iwsl~~hPlGhil~tgsnd~t~rfw~r~rp~  383 (464)
T KOG0284|consen  339 EEP--LGEIPPAHDGEIWSLAYHPLGHILATGSNDRTVRFWTRNRPG  383 (464)
T ss_pred             ccc--ccCCCcccccceeeeeccccceeEeecCCCcceeeeccCCCC
Confidence            321  123345677889999999999999999888 79999865543

>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]

Probab=100.00  E-value=3.1e-35  Score=245.86  Aligned_cols=239  Identities=23%  Similarity=0.408  Sum_probs=199.3

Q ss_pred             ccceeEEEEccCCCEEEEeeCCCcEEEEeecCCCceEEEEecCcccCeEEEEeeCCCCCCEEEEEeCCCeEEEEEcCCCC
Q 022111           11 EDTVHDVAMDFYGKRLATASSDSSIKIIGLSNSASQHLATLKGHRGPVWQVAWAHPKFGSILASCSYDGQVIIWKEGNQN   90 (302)
Q Consensus        11 ~~~v~~~~~s~~~~~l~s~~~d~~v~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~s~D~~i~iwd~~~~~   90 (302)
                      +-+|..++|.|+|+.|++|++.|.+.||+...-..+  ..+.+|..+|+++.|+++  +.+++||..+|.|++|+.+-++
T Consensus        96 kc~V~~v~WtPeGRRLltgs~SGEFtLWNg~~fnFE--tilQaHDs~Vr~m~ws~~--g~wmiSgD~gG~iKyWqpnmnn  171 (464)
T KOG0284|consen   96 KCPVNVVRWTPEGRRLLTGSQSGEFTLWNGTSFNFE--TILQAHDSPVRTMKWSHN--GTWMISGDKGGMIKYWQPNMNN  171 (464)
T ss_pred             ccceeeEEEcCCCceeEeecccccEEEecCceeeHH--HHhhhhcccceeEEEccC--CCEEEEcCCCceEEecccchhh
Confidence            347889999999999999999999999986432222  235789999999999974  8999999999999999875442


Q ss_pred             ceeEEEEecCC-CCCeeEEEecCCCCCcEEEEEecCCcEEEEEecCCCCeeeeeecccCCCCeEEEEeCCCCCCCceeec
Q 022111           91 DWTQAHTFNDH-KSSVNSIAWAPHELGLSLACGSSDGNISVFTATADGGWDTTRIDQAHPVGVTSVSWAPAMAPGALVGL  169 (302)
Q Consensus        91 ~~~~~~~~~~h-~~~i~~l~~~pd~~~~~l~sg~~d~~v~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~  169 (302)
                          ++.+..| ...|++++|+|++.  .+++|++|++|+|||.....+.  ..+ .+|...|+++.|.|..        
T Consensus       172 ----Vk~~~ahh~eaIRdlafSpnDs--kF~t~SdDg~ikiWdf~~~kee--~vL-~GHgwdVksvdWHP~k--------  234 (464)
T KOG0284|consen  172 ----VKIIQAHHAEAIRDLAFSPNDS--KFLTCSDDGTIKIWDFRMPKEE--RVL-RGHGWDVKSVDWHPTK--------  234 (464)
T ss_pred             ----hHHhhHhhhhhhheeccCCCCc--eeEEecCCCeEEEEeccCCchh--hee-ccCCCCcceeccCCcc--------
Confidence                3444444 59999999999743  7999999999999998754321  233 4899999999999975        


Q ss_pred             ccCCCceeEEEeeCCCcEEEEEEecCccccccccccccCCCceeEEEeeCCCCCCccEEEEEecCCeEEEEEeccCCcce
Q 022111          170 GLLDPVQKLASCGCDNTVKVWKMYNGIWKMDCFPALQMHSDWVRSVAWAPNLGLPKSTIASASQDGTVVIWTCAKEGEQW  249 (302)
Q Consensus       170 ~~~~~~~~l~s~~~D~~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~l~s~s~D~~i~iwd~~~~~~~~  249 (302)
                            .+|||+|.|+.|++||.+++    .|+.++.+|+..|..+.|+|++    ++|+|+|.|..++++|++..++. 
T Consensus       235 ------gLiasgskDnlVKlWDprSg----~cl~tlh~HKntVl~~~f~~n~----N~Llt~skD~~~kv~DiR~mkEl-  299 (464)
T KOG0284|consen  235 ------GLIASGSKDNLVKLWDPRSG----SCLATLHGHKNTVLAVKFNPNG----NWLLTGSKDQSCKVFDIRTMKEL-  299 (464)
T ss_pred             ------ceeEEccCCceeEeecCCCc----chhhhhhhccceEEEEEEcCCC----CeeEEccCCceEEEEehhHhHHH-
Confidence                  68999999999999999988    6888999999999999999995    88999999999999999854432 


Q ss_pred             eeeeeccCCCcEEEEEEccC-CCEEEEecCC-ceEEeeec
Q 022111          250 EGRVLKDFKTPVWSVSWSLT-GNLLAVADAN-NVTLWKEA  287 (302)
Q Consensus       250 ~~~~~~~~~~~v~~~~~spd-g~~la~~~~d-~i~~w~~~  287 (302)
                        ....+|+..|++++|+|- -.+|++|+.| .|..|...
T Consensus       300 --~~~r~Hkkdv~~~~WhP~~~~lftsgg~Dgsvvh~~v~  337 (464)
T KOG0284|consen  300 --FTYRGHKKDVTSLTWHPLNESLFTSGGSDGSVVHWVVG  337 (464)
T ss_pred             --HHhhcchhhheeeccccccccceeeccCCCceEEEecc
Confidence              234678889999999994 4788888888 79999865

>KOG0295 consensus WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=4.6e-34  Score=235.82  Aligned_cols=253  Identities=23%  Similarity=0.376  Sum_probs=212.7

Q ss_pred             CcccccccccceeEEEEccCCCEEEEeeCCCcEEEEeecCCCceEEEEecCcccCeEEEEeeCCCCCCEEEEEeCCCeEE
Q 022111            3 AQKIETGHEDTVHDVAMDFYGKRLATASSDSSIKIIGLSNSASQHLATLKGHRGPVWQVAWAHPKFGSILASCSYDGQVI   82 (302)
Q Consensus         3 ~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~s~D~~i~   82 (302)
                      ..+.+.||+.+|+.+-|+|+--.+++++.|++|++||..++  +....|+||...|..|+|..  .|++||+|+.|-.++
T Consensus       100 l~~~l~g~r~~vt~v~~hp~~~~v~~as~d~tikv~D~~tg--~~e~~LrGHt~sv~di~~~a--~Gk~l~tcSsDl~~~  175 (406)
T KOG0295|consen  100 LVQKLAGHRSSVTRVIFHPSEALVVSASEDATIKVFDTETG--ELERSLRGHTDSVFDISFDA--SGKYLATCSSDLSAK  175 (406)
T ss_pred             chhhhhccccceeeeeeccCceEEEEecCCceEEEEEccch--hhhhhhhccccceeEEEEec--CccEEEecCCccchh
Confidence            34556789999999999999999999999999999998764  44678999999999999975  389999999999999


Q ss_pred             EEEcCCCCceeEEEEecCCCCCeeEEEecCCCCCcEEEEEecCCcEEEEEecCCCCeeeeeecccCCCCeEEEEeCCCCC
Q 022111           83 IWKEGNQNDWTQAHTFNDHKSSVNSIAWAPHELGLSLACGSSDGNISVFTATADGGWDTTRIDQAHPVGVTSVSWAPAMA  162 (302)
Q Consensus        83 iwd~~~~~~~~~~~~~~~h~~~i~~l~~~pd~~~~~l~sg~~d~~v~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~  162 (302)
                      +||....  ..+++...+|...|.++.|-|.  |.++++++.|.+|+.|+..++  +....+. +|...|..+.-+.   
T Consensus       176 LWd~~~~--~~c~ks~~gh~h~vS~V~f~P~--gd~ilS~srD~tik~We~~tg--~cv~t~~-~h~ewvr~v~v~~---  245 (406)
T KOG0295|consen  176 LWDFDTF--FRCIKSLIGHEHGVSSVFFLPL--GDHILSCSRDNTIKAWECDTG--YCVKTFP-GHSEWVRMVRVNQ---  245 (406)
T ss_pred             heeHHHH--HHHHHHhcCcccceeeEEEEec--CCeeeecccccceeEEecccc--eeEEecc-CchHhEEEEEecC---
Confidence            9998653  3456677789999999999997  679999999999999998754  4444554 8888888877554   


Q ss_pred             CCceeecccCCCceeEEEeeCCCcEEEEEEecCccccccccccccCCCceeEEEeeCCCCC-----------CccEEEEE
Q 022111          163 PGALVGLGLLDPVQKLASCGCDNTVKVWKMYNGIWKMDCFPALQMHSDWVRSVAWAPNLGL-----------PKSTIASA  231 (302)
Q Consensus       163 ~~~~~~~~~~~~~~~l~s~~~D~~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~-----------~~~~l~s~  231 (302)
                                 +|..+|+|+.|.+|++|=+.+.    .|...+.+|+.+|.|++|-|...+           .+..++++
T Consensus       246 -----------DGti~As~s~dqtl~vW~~~t~----~~k~~lR~hEh~vEci~wap~~~~~~i~~at~~~~~~~~l~s~  310 (406)
T KOG0295|consen  246 -----------DGTIIASCSNDQTLRVWVVATK----QCKAELREHEHPVECIAWAPESSYPSISEATGSTNGGQVLGSG  310 (406)
T ss_pred             -----------CeeEEEecCCCceEEEEEeccc----hhhhhhhccccceEEEEecccccCcchhhccCCCCCccEEEee
Confidence                       3689999999999999998765    567788999999999999985432           12589999


Q ss_pred             ecCCeEEEEEeccCCcceeeeeeccCCCcEEEEEEccCCCEEEEecCC-ceEEeeec
Q 022111          232 SQDGTVVIWTCAKEGEQWEGRVLKDFKTPVWSVSWSLTGNLLAVADAN-NVTLWKEA  287 (302)
Q Consensus       232 s~D~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~la~~~~d-~i~~w~~~  287 (302)
                      |.|++||+||+....   ..-.+.+|.+.|.+++|+|.|+||++..+| ++++||..
T Consensus       311 SrDktIk~wdv~tg~---cL~tL~ghdnwVr~~af~p~Gkyi~ScaDDktlrvwdl~  364 (406)
T KOG0295|consen  311 SRDKTIKIWDVSTGM---CLFTLVGHDNWVRGVAFSPGGKYILSCADDKTLRVWDLK  364 (406)
T ss_pred             cccceEEEEeccCCe---EEEEEecccceeeeeEEcCCCeEEEEEecCCcEEEEEec
Confidence            999999999998642   123357889999999999999999999888 79999986

>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]

Probab=100.00  E-value=1.2e-34  Score=238.34  Aligned_cols=239  Identities=21%  Similarity=0.430  Sum_probs=195.7

Q ss_pred             cccccccceeEEEEccCCCEEEEeeCCCcEEEEeecCCCceEEEEecCcccCeEEEEeeCCCCCCEEEEEeCCCeEEEEE
Q 022111            6 IETGHEDTVHDVAMDFYGKRLATASSDSSIKIIGLSNSASQHLATLKGHRGPVWQVAWAHPKFGSILASCSYDGQVIIWK   85 (302)
Q Consensus         6 ~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~s~D~~i~iwd   85 (302)
                      ++.||++.|.++.  .+.+.++||+.|.+|++||+.+  ++++.++-+|...|..+.|+    ..+++|||.|+++.+||
T Consensus       232 ~L~GHtGSVLCLq--yd~rviisGSSDsTvrvWDv~t--ge~l~tlihHceaVLhlrf~----ng~mvtcSkDrsiaVWd  303 (499)
T KOG0281|consen  232 ILTGHTGSVLCLQ--YDERVIVSGSSDSTVRVWDVNT--GEPLNTLIHHCEAVLHLRFS----NGYMVTCSKDRSIAVWD  303 (499)
T ss_pred             hhhcCCCcEEeee--ccceEEEecCCCceEEEEeccC--CchhhHHhhhcceeEEEEEe----CCEEEEecCCceeEEEe
Confidence            4679999997665  5578999999999999999965  56788889999999999997    35899999999999999


Q ss_pred             cCCCCceeEEEEecCCCCCeeEEEecCCCCCcEEEEEecCCcEEEEEecCCCCeeeeeecccCCCCeEEEEeCCCCCCCc
Q 022111           86 EGNQNDWTQAHTFNDHKSSVNSIAWAPHELGLSLACGSSDGNISVFTATADGGWDTTRIDQAHPVGVTSVSWAPAMAPGA  165 (302)
Q Consensus        86 ~~~~~~~~~~~~~~~h~~~i~~l~~~pd~~~~~l~sg~~d~~v~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~  165 (302)
                      +......++...+.+|...|+.+.|.    .+++++++.|++|++|+..+.   .......+|..+|.++.+.       
T Consensus       304 m~sps~it~rrVLvGHrAaVNvVdfd----~kyIVsASgDRTikvW~~st~---efvRtl~gHkRGIAClQYr-------  369 (499)
T KOG0281|consen  304 MASPTDITLRRVLVGHRAAVNVVDFD----DKYIVSASGDRTIKVWSTSTC---EFVRTLNGHKRGIACLQYR-------  369 (499)
T ss_pred             ccCchHHHHHHHHhhhhhheeeeccc----cceEEEecCCceEEEEeccce---eeehhhhcccccceehhcc-------
Confidence            97765555667788999999999996    348999999999999998643   2223334898888888763       


Q ss_pred             eeecccCCCceeEEEeeCCCcEEEEEEecCccccccccccccCCCceeEEEeeCCCCCCccEEEEEecCCeEEEEEeccC
Q 022111          166 LVGLGLLDPVQKLASCGCDNTVKVWKMYNGIWKMDCFPALQMHSDWVRSVAWAPNLGLPKSTIASASQDGTVVIWTCAKE  245 (302)
Q Consensus       166 ~~~~~~~~~~~~l~s~~~D~~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~l~s~s~D~~i~iwd~~~~  245 (302)
                               +++++||+.|.+|++||+..+    .|++.+.||++-|+|+.|..      +.|+||+.||+|||||+...
T Consensus       370 ---------~rlvVSGSSDntIRlwdi~~G----~cLRvLeGHEeLvRciRFd~------krIVSGaYDGkikvWdl~aa  430 (499)
T KOG0281|consen  370 ---------DRLVVSGSSDNTIRLWDIECG----ACLRVLEGHEELVRCIRFDN------KRIVSGAYDGKIKVWDLQAA  430 (499)
T ss_pred             ---------CeEEEecCCCceEEEEecccc----HHHHHHhchHHhhhheeecC------ceeeeccccceEEEEecccc
Confidence                     589999999999999999988    68889999999999999974      56999999999999999764


Q ss_pred             Cccee------eeeeccCCCcEEEEEEccCCCEEEEecCC-ceEEeeec
Q 022111          246 GEQWE------GRVLKDFKTPVWSVSWSLTGNLLAVADAN-NVTLWKEA  287 (302)
Q Consensus       246 ~~~~~------~~~~~~~~~~v~~~~~spdg~~la~~~~d-~i~~w~~~  287 (302)
                      ..+..      ...+.+|.+.|..+.|  |..+|++.+++ .|.+|+..
T Consensus       431 ldpra~~~~~Cl~~lv~hsgRVFrLQF--D~fqIvsssHddtILiWdFl  477 (499)
T KOG0281|consen  431 LDPRAPASTLCLRTLVEHSGRVFRLQF--DEFQIISSSHDDTILIWDFL  477 (499)
T ss_pred             cCCcccccchHHHhhhhccceeEEEee--cceEEEeccCCCeEEEEEcC
Confidence            32211      1123567788999999  55566666666 89999974

>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=4.9e-33  Score=251.73  Aligned_cols=252  Identities=22%  Similarity=0.339  Sum_probs=207.0

Q ss_pred             ccccccceeEEEEccCCCEEEEeeCCCcEEEEeecCCCceEEEEecCcccCeEEEEeeCCCCCCEEEEEeCCCeEEEEEc
Q 022111            7 ETGHEDTVHDVAMDFYGKRLATASSDSSIKIIGLSNSASQHLATLKGHRGPVWQVAWAHPKFGSILASCSYDGQVIIWKE   86 (302)
Q Consensus         7 ~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~s~D~~i~iwd~   86 (302)
                      |..|.++|..++|+|++.+++|||+|.+|++|+..+  .+++.++.||.+.|+.+.|.+.  =.+++|+|.|.+|+||+.
T Consensus        47 FdeHdGpVRgv~FH~~qplFVSGGDDykIkVWnYk~--rrclftL~GHlDYVRt~~FHhe--yPWIlSASDDQTIrIWNw  122 (1202)
T KOG0292|consen   47 FDEHDGPVRGVDFHPTQPLFVSGGDDYKIKVWNYKT--RRCLFTLLGHLDYVRTVFFHHE--YPWILSASDDQTIRIWNW  122 (1202)
T ss_pred             hhccCCccceeeecCCCCeEEecCCccEEEEEeccc--ceehhhhccccceeEEeeccCC--CceEEEccCCCeEEEEec
Confidence            678999999999999999999999999999999865  5688999999999999999764  368999999999999998


Q ss_pred             CCCCceeEEEEecCCCCCeeEEEecCCCCCcEEEEEecCCcEEEEEecCC-------CC--------------e---e--
Q 022111           87 GNQNDWTQAHTFNDHKSSVNSIAWAPHELGLSLACGSSDGNISVFTATAD-------GG--------------W---D--  140 (302)
Q Consensus        87 ~~~~~~~~~~~~~~h~~~i~~l~~~pd~~~~~l~sg~~d~~v~~~~~~~~-------~~--------------~---~--  140 (302)
                      .+.   .++..+++|++.|.|..|+|.++  .++++|.|.+|++||+..-       +.              +   +  
T Consensus       123 qsr---~~iavltGHnHYVMcAqFhptED--lIVSaSLDQTVRVWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaV  197 (1202)
T KOG0292|consen  123 QSR---KCIAVLTGHNHYVMCAQFHPTED--LIVSASLDQTVRVWDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAV  197 (1202)
T ss_pred             cCC---ceEEEEecCceEEEeeccCCccc--eEEEecccceEEEEeecchhccCCCCCCchhhhhccccchhhcCCcCee
Confidence            776   47889999999999999999744  8999999999999998421       00              0   0  


Q ss_pred             eeeecccCCCCeEEEEeCCCCCCCceeecccCCCceeEEEeeCCCcEEEEEEecC-ccccccccccccCCCceeEEEeeC
Q 022111          141 TTRIDQAHPVGVTSVSWAPAMAPGALVGLGLLDPVQKLASCGCDNTVKVWKMYNG-IWKMDCFPALQMHSDWVRSVAWAP  219 (302)
Q Consensus       141 ~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~D~~v~iwd~~~~-~~~~~~~~~~~~h~~~v~~v~~~p  219 (302)
                      ...+..+|...|+-++|.|..              -+|+||+.|+.|++|.+... .|.   +.+..||-+.|.|+-|+|
T Consensus       198 VK~VLEGHDRGVNwaAfhpTl--------------pliVSG~DDRqVKlWrmnetKaWE---vDtcrgH~nnVssvlfhp  260 (1202)
T KOG0292|consen  198 VKHVLEGHDRGVNWAAFHPTL--------------PLIVSGADDRQVKLWRMNETKAWE---VDTCRGHYNNVSSVLFHP  260 (1202)
T ss_pred             eeeeecccccccceEEecCCc--------------ceEEecCCcceeeEEEecccccee---ehhhhcccCCcceEEecC
Confidence            011223777788888888754              58999999999999999753 343   456789999999999999


Q ss_pred             CCCCCccEEEEEecCCeEEEEEeccCCcceeeeeeccCCCcEEEEEEccCCCEEEEecCCceEEeeecCCce
Q 022111          220 NLGLPKSTIASASQDGTVVIWTCAKEGEQWEGRVLKDFKTPVWSVSWSLTGNLLAVADANNVTLWKEAVDGE  291 (302)
Q Consensus       220 ~~~~~~~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~la~~~~d~i~~w~~~~~~~  291 (302)
                      ..    +.|+|.|+|++|||||+.+....   .......+..|.++-+|..+++|+|.+.++.+++...+++
T Consensus       261 ~q----~lIlSnsEDksirVwDm~kRt~v---~tfrrendRFW~laahP~lNLfAAgHDsGm~VFkleRErp  325 (1202)
T KOG0292|consen  261 HQ----DLILSNSEDKSIRVWDMTKRTSV---QTFRRENDRFWILAAHPELNLFAAGHDSGMIVFKLERERP  325 (1202)
T ss_pred             cc----ceeEecCCCccEEEEecccccce---eeeeccCCeEEEEEecCCcceeeeecCCceEEEEEcccCc
Confidence            64    67999999999999999764321   2223345789999999999999999666899998764433

>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=100.00  E-value=2.3e-33  Score=249.63  Aligned_cols=251  Identities=26%  Similarity=0.380  Sum_probs=207.0

Q ss_pred             cccccccceeEEEEccCCCEEEEeeCCCcEEEEeecCCC--ceEEEEecCcccCeEEEEeeCCCCCCEEEEEeCCCeEEE
Q 022111            6 IETGHEDTVHDVAMDFYGKRLATASSDSSIKIIGLSNSA--SQHLATLKGHRGPVWQVAWAHPKFGSILASCSYDGQVII   83 (302)
Q Consensus         6 ~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~lw~~~~~~--~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~s~D~~i~i   83 (302)
                      +..||++.|.++....+|.+|+|||.|.++++|.+++..  ..++.+..+|++.|.+++++.. ....++++|.|+++++
T Consensus       360 ii~GH~e~vlSL~~~~~g~llat~sKD~svilWr~~~~~~~~~~~a~~~gH~~svgava~~~~-~asffvsvS~D~tlK~  438 (775)
T KOG0319|consen  360 IIPGHTEAVLSLDVWSSGDLLATGSKDKSVILWRLNNNCSKSLCVAQANGHTNSVGAVAGSKL-GASFFVSVSQDCTLKL  438 (775)
T ss_pred             EEeCchhheeeeeecccCcEEEEecCCceEEEEEecCCcchhhhhhhhcccccccceeeeccc-CccEEEEecCCceEEE
Confidence            567999999999866678899999999999999884332  2345667899999999999653 4678999999999999


Q ss_pred             EEcCCCCce--eEEE----EecCCCCCeeEEEecCCCCCcEEEEEecCCcEEEEEecCCCCeeeeeecccCCCCeEEEEe
Q 022111           84 WKEGNQNDW--TQAH----TFNDHKSSVNSIAWAPHELGLSLACGSSDGNISVFTATADGGWDTTRIDQAHPVGVTSVSW  157 (302)
Q Consensus        84 wd~~~~~~~--~~~~----~~~~h~~~i~~l~~~pd~~~~~l~sg~~d~~v~~~~~~~~~~~~~~~~~~~h~~~v~~~~~  157 (302)
                      |++....+.  ....    +-..|...|+|++++|+  ..++||||.|++.+||++...  .....+ .+|...+.++.|
T Consensus       439 W~l~~s~~~~~~~~~~~~~t~~aHdKdIN~Vaia~n--dkLiAT~SqDktaKiW~le~~--~l~~vL-sGH~RGvw~V~F  513 (775)
T KOG0319|consen  439 WDLPKSKETAFPIVLTCRYTERAHDKDINCVAIAPN--DKLIATGSQDKTAKIWDLEQL--RLLGVL-SGHTRGVWCVSF  513 (775)
T ss_pred             ecCCCcccccccceehhhHHHHhhcccccceEecCC--CceEEecccccceeeecccCc--eEEEEe-eCCccceEEEEe
Confidence            998652211  1111    23459999999999998  458999999999999999732  222344 499999999999


Q ss_pred             CCCCCCCceeecccCCCceeEEEeeCCCcEEEEEEecCccccccccccccCCCceeEEEeeCCCCCCccEEEEEecCCeE
Q 022111          158 APAMAPGALVGLGLLDPVQKLASCGCDNTVKVWKMYNGIWKMDCFPALQMHSDWVRSVAWAPNLGLPKSTIASASQDGTV  237 (302)
Q Consensus       158 ~~~~~~~~~~~~~~~~~~~~l~s~~~D~~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~l~s~s~D~~i  237 (302)
                      +|..              +.++|||.|++|+||.+.+.    .|+.+|.||+..|..+.|-.++    .+|+|++.||-|
T Consensus       514 s~~d--------------q~laT~SgD~TvKIW~is~f----SClkT~eGH~~aVlra~F~~~~----~qliS~~adGli  571 (775)
T KOG0319|consen  514 SKND--------------QLLATCSGDKTVKIWSISTF----SCLKTFEGHTSAVLRASFIRNG----KQLISAGADGLI  571 (775)
T ss_pred             cccc--------------ceeEeccCCceEEEEEeccc----eeeeeecCccceeEeeeeeeCC----cEEEeccCCCcE
Confidence            9853              78999999999999999875    7999999999999999998774    889999999999


Q ss_pred             EEEEeccCCcceeeeeeccCCCcEEEEEEccCCCEEEEecCC-ceEEeeec
Q 022111          238 VIWTCAKEGEQWEGRVLKDFKTPVWSVSWSLTGNLLAVADAN-NVTLWKEA  287 (302)
Q Consensus       238 ~iwd~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~la~~~~d-~i~~w~~~  287 (302)
                      +||++++..  . ...+..|.+.||+++-+|.+.++++|+.| .|.+|+..
T Consensus       572 KlWnikt~e--C-~~tlD~H~DrvWaL~~~~~~~~~~tgg~Dg~i~~wkD~  619 (775)
T KOG0319|consen  572 KLWNIKTNE--C-EMTLDAHNDRVWALSVSPLLDMFVTGGGDGRIIFWKDV  619 (775)
T ss_pred             EEEeccchh--h-hhhhhhccceeEEEeecCccceeEecCCCeEEEEeecC
Confidence            999998642  2 23457899999999999999999999999 69999863

>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]

Probab=100.00  E-value=1.4e-32  Score=226.72  Aligned_cols=253  Identities=23%  Similarity=0.360  Sum_probs=203.3

Q ss_pred             ccccccccceeEEEEccCCCEEEEeeCCCcEEEEeecCCCceEEEEecCcccCeEEEEeeCCCCCCEEEEEeCCCeEEEE
Q 022111            5 KIETGHEDTVHDVAMDFYGKRLATASSDSSIKIIGLSNSASQHLATLKGHRGPVWQVAWAHPKFGSILASCSYDGQVIIW   84 (302)
Q Consensus         5 ~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~s~D~~i~iw   84 (302)
                      ++..||-+.|.++++.|.+++|++|+.|++++|||+.+  ++...++.||...|..+++++.  ..||++|+.|++|+-|
T Consensus       145 rVi~gHlgWVr~vavdP~n~wf~tgs~DrtikIwDlat--g~LkltltGhi~~vr~vavS~r--HpYlFs~gedk~VKCw  220 (460)
T KOG0285|consen  145 RVISGHLGWVRSVAVDPGNEWFATGSADRTIKIWDLAT--GQLKLTLTGHIETVRGVAVSKR--HPYLFSAGEDKQVKCW  220 (460)
T ss_pred             hhhhhccceEEEEeeCCCceeEEecCCCceeEEEEccc--CeEEEeecchhheeeeeeeccc--CceEEEecCCCeeEEE
Confidence            34679999999999999999999999999999999976  4556789999999999999864  5799999999999999


Q ss_pred             EcCCCCceeEEEEecCCCCCeeEEEecCCCCCcEEEEEecCCcEEEEEecCCCCeeeeeecccCCCCeEEEEeCCCCCCC
Q 022111           85 KEGNQNDWTQAHTFNDHKSSVNSIAWAPHELGLSLACGSSDGNISVFTATADGGWDTTRIDQAHPVGVTSVSWAPAMAPG  164 (302)
Q Consensus        85 d~~~~~~~~~~~~~~~h~~~i~~l~~~pd~~~~~l~sg~~d~~v~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~  164 (302)
                      |++.+.   -+..+-+|...|.|++.+|..  ..|++|+.|.++++||+++..  ....+ .+|..+|.++.+.|..   
T Consensus       221 DLe~nk---vIR~YhGHlS~V~~L~lhPTl--dvl~t~grDst~RvWDiRtr~--~V~~l-~GH~~~V~~V~~~~~d---  289 (460)
T KOG0285|consen  221 DLEYNK---VIRHYHGHLSGVYCLDLHPTL--DVLVTGGRDSTIRVWDIRTRA--SVHVL-SGHTNPVASVMCQPTD---  289 (460)
T ss_pred             echhhh---hHHHhccccceeEEEeccccc--eeEEecCCcceEEEeeecccc--eEEEe-cCCCCcceeEEeecCC---
Confidence            998763   345677899999999999973  489999999999999998653  33444 3899999999988753   


Q ss_pred             ceeecccCCCceeEEEeeCCCcEEEEEEecCccc-------------------------------------ccccccccc
Q 022111          165 ALVGLGLLDPVQKLASCGCDNTVKVWKMYNGIWK-------------------------------------MDCFPALQM  207 (302)
Q Consensus       165 ~~~~~~~~~~~~~l~s~~~D~~v~iwd~~~~~~~-------------------------------------~~~~~~~~~  207 (302)
                                 .+++||+.|++|++||++.+...                                     ...++.+.+
T Consensus       290 -----------pqvit~S~D~tvrlWDl~agkt~~tlt~hkksvral~lhP~e~~fASas~dnik~w~~p~g~f~~nlsg  358 (460)
T KOG0285|consen  290 -----------PQVITGSHDSTVRLWDLRAGKTMITLTHHKKSVRALCLHPKENLFASASPDNIKQWKLPEGEFLQNLSG  358 (460)
T ss_pred             -----------CceEEecCCceEEEeeeccCceeEeeecccceeeEEecCCchhhhhccCCccceeccCCccchhhcccc
Confidence                       47999999999999999765210                                     012234667


Q ss_pred             CCCceeEEEeeCCCCCCccEEEEEecCCeEEEEEeccCCcceeeeee-----ccCCCcEEEEEEccCCCEEEEecCC-ce
Q 022111          208 HSDWVRSVAWAPNLGLPKSTIASASQDGTVVIWTCAKEGEQWEGRVL-----KDFKTPVWSVSWSLTGNLLAVADAN-NV  281 (302)
Q Consensus       208 h~~~v~~v~~~p~~~~~~~~l~s~s~D~~i~iwd~~~~~~~~~~~~~-----~~~~~~v~~~~~spdg~~la~~~~d-~i  281 (302)
                      |..-|++++-+.|     ..+++|++.|.|..||.++..........     .+.+..|.+.+|...|.+|+++..| +|
T Consensus       359 h~~iintl~~nsD-----~v~~~G~dng~~~fwdwksg~nyQ~~~t~vqpGSl~sEagI~as~fDktg~rlit~eadKtI  433 (460)
T KOG0285|consen  359 HNAIINTLSVNSD-----GVLVSGGDNGSIMFWDWKSGHNYQRGQTIVQPGSLESEAGIFASCFDKTGSRLITGEADKTI  433 (460)
T ss_pred             ccceeeeeeeccC-----ceEEEcCCceEEEEEecCcCcccccccccccCCccccccceeEEeecccCceEEeccCCcce
Confidence            7777888877766     57999999999999999875422111111     1234568999999999999999888 89


Q ss_pred             EEeeecC
Q 022111          282 TLWKEAV  288 (302)
Q Consensus       282 ~~w~~~~  288 (302)
                      ++|+..+
T Consensus       434 k~~keDe  440 (460)
T KOG0285|consen  434 KMYKEDE  440 (460)
T ss_pred             EEEeccc
Confidence            9999744

>KOG0286 consensus G-protein beta subunit [General function prediction only]

Probab=100.00  E-value=4.8e-32  Score=218.23  Aligned_cols=242  Identities=19%  Similarity=0.234  Sum_probs=199.6

Q ss_pred             ccceeEEEEccCCCEEEEeeCCCcEEEEeecCC----CceEEEEecCcccCeEEEEeeCCCCCCEEEEEeCCCeEEEEEc
Q 022111           11 EDTVHDVAMDFYGKRLATASSDSSIKIIGLSNS----ASQHLATLKGHRGPVWQVAWAHPKFGSILASCSYDGQVIIWKE   86 (302)
Q Consensus        11 ~~~v~~~~~s~~~~~l~s~~~d~~v~lw~~~~~----~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~s~D~~i~iwd~   86 (302)
                      ...|-.++|+|.|+++|.||.|+.+.||+++..    ..+....+.+|.+.+.+++|-+   ...|+|+|.|.++.+||+
T Consensus        97 s~WVMtCA~sPSg~~VAcGGLdN~Csiy~ls~~d~~g~~~v~r~l~gHtgylScC~f~d---D~~ilT~SGD~TCalWDi  173 (343)
T KOG0286|consen   97 SSWVMTCAYSPSGNFVACGGLDNKCSIYPLSTRDAEGNVRVSRELAGHTGYLSCCRFLD---DNHILTGSGDMTCALWDI  173 (343)
T ss_pred             ceeEEEEEECCCCCeEEecCcCceeEEEecccccccccceeeeeecCccceeEEEEEcC---CCceEecCCCceEEEEEc
Confidence            446778999999999999999999999999633    1234567899999999999964   356789999999999999


Q ss_pred             CCCCceeEEEEecCCCCCeeEEEecCCCCCcEEEEEecCCcEEEEEecCCCCeeeeeecccCCCCeEEEEeCCCCCCCce
Q 022111           87 GNQNDWTQAHTFNDHKSSVNSIAWAPHELGLSLACGSSDGNISVFTATADGGWDTTRIDQAHPVGVTSVSWAPAMAPGAL  166 (302)
Q Consensus        87 ~~~~~~~~~~~~~~h~~~i~~l~~~pd~~~~~l~sg~~d~~v~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~  166 (302)
                      +++.   .+..|.+|.+-|.+++++|. +++.+++|+-|+.-+|||++.....+  .+. +|...|+++.|.|++     
T Consensus       174 e~g~---~~~~f~GH~gDV~slsl~p~-~~ntFvSg~cD~~aklWD~R~~~c~q--tF~-ghesDINsv~ffP~G-----  241 (343)
T KOG0286|consen  174 ETGQ---QTQVFHGHTGDVMSLSLSPS-DGNTFVSGGCDKSAKLWDVRSGQCVQ--TFE-GHESDINSVRFFPSG-----  241 (343)
T ss_pred             ccce---EEEEecCCcccEEEEecCCC-CCCeEEecccccceeeeeccCcceeE--eec-ccccccceEEEccCC-----
Confidence            8873   67789999999999999995 36799999999999999999775443  333 899999999999974     


Q ss_pred             eecccCCCceeEEEeeCCCcEEEEEEecCccccccccccccCCCceeEEEeeCCCCCCccEEEEEecCCeEEEEEeccCC
Q 022111          167 VGLGLLDPVQKLASCGCDNTVKVWKMYNGIWKMDCFPALQMHSDWVRSVAWAPNLGLPKSTIASASQDGTVVIWTCAKEG  246 (302)
Q Consensus       167 ~~~~~~~~~~~l~s~~~D~~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~l~s~s~D~~i~iwd~~~~~  246 (302)
                               .-|++|+.|++.|+||++..+.. . ...-..-..+|++++||-.|    +.|.+|-.|.++.+||.-...
T Consensus       242 ---------~afatGSDD~tcRlyDlRaD~~~-a-~ys~~~~~~gitSv~FS~SG----RlLfagy~d~~c~vWDtlk~e  306 (343)
T KOG0286|consen  242 ---------DAFATGSDDATCRLYDLRADQEL-A-VYSHDSIICGITSVAFSKSG----RLLFAGYDDFTCNVWDTLKGE  306 (343)
T ss_pred             ---------CeeeecCCCceeEEEeecCCcEE-e-eeccCcccCCceeEEEcccc----cEEEeeecCCceeEeeccccc
Confidence                     67999999999999999975321 1 11222335679999999874    889999999999999975432


Q ss_pred             cceeeeeeccCCCcEEEEEEccCCCEEEEecCC-ceEEee
Q 022111          247 EQWEGRVLKDFKTPVWSVSWSLTGNLLAVADAN-NVTLWK  285 (302)
Q Consensus       247 ~~~~~~~~~~~~~~v~~~~~spdg~~la~~~~d-~i~~w~  285 (302)
                         ....+.+|+..|.++..+|||.-|++|+=| .++||.
T Consensus       307 ---~vg~L~GHeNRvScl~~s~DG~av~TgSWDs~lriW~  343 (343)
T KOG0286|consen  307 ---RVGVLAGHENRVSCLGVSPDGMAVATGSWDSTLRIWA  343 (343)
T ss_pred             ---eEEEeeccCCeeEEEEECCCCcEEEecchhHheeecC
Confidence               234567999999999999999999999989 799993

>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]

Probab=100.00  E-value=7e-32  Score=244.96  Aligned_cols=251  Identities=31%  Similarity=0.457  Sum_probs=201.9

Q ss_pred             cccccccceeEEEEccCCCEEEEeeCCCcEEEEeecCCCceEEEEecCcccCeEEEEeeCCCCCCEEEEEeCCCeEEEEE
Q 022111            6 IETGHEDTVHDVAMDFYGKRLATASSDSSIKIIGLSNSASQHLATLKGHRGPVWQVAWAHPKFGSILASCSYDGQVIIWK   85 (302)
Q Consensus         6 ~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~s~D~~i~iwd   85 (302)
                      ...+|...|.+++|+|+++++++++.|++++|||+. .....+.++.+|...|++++|++.  ++++++|+.|++|+|||
T Consensus       198 ~l~~h~~~v~~~~fs~d~~~l~s~s~D~tiriwd~~-~~~~~~~~l~gH~~~v~~~~f~p~--g~~i~Sgs~D~tvriWd  274 (456)
T KOG0266|consen  198 ELSGHTRGVSDVAFSPDGSYLLSGSDDKTLRIWDLK-DDGRNLKTLKGHSTYVTSVAFSPD--GNLLVSGSDDGTVRIWD  274 (456)
T ss_pred             cccccccceeeeEECCCCcEEEEecCCceEEEeecc-CCCeEEEEecCCCCceEEEEecCC--CCEEEEecCCCcEEEEe
Confidence            347899999999999999999999999999999993 334678899999999999999864  69999999999999999


Q ss_pred             cCCCCceeEEEEecCCCCCeeEEEecCCCCCcEEEEEecCCcEEEEEecCCCCeeeeeecccCCC--CeEEEEeCCCCCC
Q 022111           86 EGNQNDWTQAHTFNDHKSSVNSIAWAPHELGLSLACGSSDGNISVFTATADGGWDTTRIDQAHPV--GVTSVSWAPAMAP  163 (302)
Q Consensus        86 ~~~~~~~~~~~~~~~h~~~i~~l~~~pd~~~~~l~sg~~d~~v~~~~~~~~~~~~~~~~~~~h~~--~v~~~~~~~~~~~  163 (302)
                      ++++   ++..++.+|.+.|++++|+++  +..|++++.|+.|++||...........+ ..+..  .++++.|+|+   
T Consensus       275 ~~~~---~~~~~l~~hs~~is~~~f~~d--~~~l~s~s~d~~i~vwd~~~~~~~~~~~~-~~~~~~~~~~~~~fsp~---  345 (456)
T KOG0266|consen  275 VRTG---ECVRKLKGHSDGISGLAFSPD--GNLLVSASYDGTIRVWDLETGSKLCLKLL-SGAENSAPVTSVQFSPN---  345 (456)
T ss_pred             ccCC---eEEEeeeccCCceEEEEECCC--CCEEEEcCCCccEEEEECCCCceeeeecc-cCCCCCCceeEEEECCC---
Confidence            9874   578899999999999999998  66899999999999999975431101122 13333  5899999986   


Q ss_pred             CceeecccCCCceeEEEeeCCCcEEEEEEecCccccccccccccCCCceeEEEeeCCCCCCccEEEEEecCCeEEEEEec
Q 022111          164 GALVGLGLLDPVQKLASCGCDNTVKVWKMYNGIWKMDCFPALQMHSDWVRSVAWAPNLGLPKSTIASASQDGTVVIWTCA  243 (302)
Q Consensus       164 ~~~~~~~~~~~~~~l~s~~~D~~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~l~s~s~D~~i~iwd~~  243 (302)
                                 +.+|++++.|+++++||+..+    .+...+.+|...+.| -|++.....+..+.+|+.|+.|++||+.
T Consensus       346 -----------~~~ll~~~~d~~~~~w~l~~~----~~~~~~~~~~~~~~~-~~~~~~~~~~~~i~sg~~d~~v~~~~~~  409 (456)
T KOG0266|consen  346 -----------GKYLLSASLDRTLKLWDLRSG----KSVGTYTGHSNLVRC-IFSPTLSTGGKLIYSGSEDGSVYVWDSS  409 (456)
T ss_pred             -----------CcEEEEecCCCeEEEEEccCC----cceeeecccCCccee-EecccccCCCCeEEEEeCCceEEEEeCC
Confidence                       489999999999999999876    455667778775433 2333222235889999999999999998


Q ss_pred             cCCcceeeeeeccC-CCcEEEEEEccCCCEEEEec--CC-ceEEeeec
Q 022111          244 KEGEQWEGRVLKDF-KTPVWSVSWSLTGNLLAVAD--AN-NVTLWKEA  287 (302)
Q Consensus       244 ~~~~~~~~~~~~~~-~~~v~~~~~spdg~~la~~~--~d-~i~~w~~~  287 (302)
                      ....   ...+.+| ...+..++|+|..+++++++  .| .+++|+..
T Consensus       410 s~~~---~~~l~~h~~~~~~~~~~~~~~~~~~s~s~~~d~~~~~w~~~  454 (456)
T KOG0266|consen  410 SGGI---LQRLEGHSKAAVSDLSSHPTENLIASSSFEGDGLIRLWKYD  454 (456)
T ss_pred             ccch---hhhhcCCCCCceeccccCCCcCeeeecCcCCCceEEEecCC
Confidence            6322   1234566 77899999999999999997  45 69999853

>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]

Probab=100.00  E-value=1.6e-31  Score=229.99  Aligned_cols=269  Identities=20%  Similarity=0.325  Sum_probs=200.0

Q ss_pred             cccccccceeEEEEccCCCEEEEeeCCCcEEEEeecCCCceEEEEec---CcccCeEEEEeeCCCCCCEEEEEeCCCeEE
Q 022111            6 IETGHEDTVHDVAMDFYGKRLATASSDSSIKIIGLSNSASQHLATLK---GHRGPVWQVAWAHPKFGSILASCSYDGQVI   82 (302)
Q Consensus         6 ~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~lw~~~~~~~~~~~~~~---~h~~~v~~v~~~~~~~~~~l~s~s~D~~i~   82 (302)
                      ++..|..-|+++.|+|||++++|+|.||++.|||-..  ++.+..+.   +|++.|++|+|+|+  ++.++|+|.|+++|
T Consensus       185 s~r~HskFV~~VRysPDG~~Fat~gsDgki~iyDGkt--ge~vg~l~~~~aHkGsIfalsWsPD--s~~~~T~SaDkt~K  260 (603)
T KOG0318|consen  185 SFREHSKFVNCVRYSPDGSRFATAGSDGKIYIYDGKT--GEKVGELEDSDAHKGSIFALSWSPD--STQFLTVSADKTIK  260 (603)
T ss_pred             cccccccceeeEEECCCCCeEEEecCCccEEEEcCCC--ccEEEEecCCCCccccEEEEEECCC--CceEEEecCCceEE
Confidence            3557999999999999999999999999999998543  45566665   89999999999975  79999999999999


Q ss_pred             EEEcCCCCc----------------------------------------eeEEEEecCCCCCeeEEEecCCCCCcEEEEE
Q 022111           83 IWKEGNQND----------------------------------------WTQAHTFNDHKSSVNSIAWAPHELGLSLACG  122 (302)
Q Consensus        83 iwd~~~~~~----------------------------------------~~~~~~~~~h~~~i~~l~~~pd~~~~~l~sg  122 (302)
                      |||+.+...                                        ....+++.+|+..|+++..+||  +..|.+|
T Consensus       261 IWdVs~~slv~t~~~~~~v~dqqvG~lWqkd~lItVSl~G~in~ln~~d~~~~~~i~GHnK~ITaLtv~~d--~~~i~Sg  338 (603)
T KOG0318|consen  261 IWDVSTNSLVSTWPMGSTVEDQQVGCLWQKDHLITVSLSGTINYLNPSDPSVLKVISGHNKSITALTVSPD--GKTIYSG  338 (603)
T ss_pred             EEEeeccceEEEeecCCchhceEEEEEEeCCeEEEEEcCcEEEEecccCCChhheecccccceeEEEEcCC--CCEEEee
Confidence            999865321                                        1123466789999999999998  5799999


Q ss_pred             ecCCcEEEEEecCCCCeeeeeecccCCCCeEEEE-----------eC-------------------------------CC
Q 022111          123 SSDGNISVFTATADGGWDTTRIDQAHPVGVTSVS-----------WA-------------------------------PA  160 (302)
Q Consensus       123 ~~d~~v~~~~~~~~~~~~~~~~~~~h~~~v~~~~-----------~~-------------------------------~~  160 (302)
                      +.||.|.-|+...+....+  ....|...|.++.           |.                               ++
T Consensus       339 syDG~I~~W~~~~g~~~~~--~g~~h~nqI~~~~~~~~~~~~t~g~Dd~l~~~~~~~~~~t~~~~~~lg~QP~~lav~~d  416 (603)
T KOG0318|consen  339 SYDGHINSWDSGSGTSDRL--AGKGHTNQIKGMAASESGELFTIGWDDTLRVISLKDNGYTKSEVVKLGSQPKGLAVLSD  416 (603)
T ss_pred             ccCceEEEEecCCcccccc--ccccccceEEEEeecCCCcEEEEecCCeEEEEecccCcccccceeecCCCceeEEEcCC
Confidence            9999999999865422111  0012322222222           11                               11


Q ss_pred             CCCCceee-------------------------cccCCCceeEEEeeCCCcEEEEEEecCccccccccccccCCCceeEE
Q 022111          161 MAPGALVG-------------------------LGLLDPVQKLASCGCDNTVKVWKMYNGIWKMDCFPALQMHSDWVRSV  215 (302)
Q Consensus       161 ~~~~~~~~-------------------------~~~~~~~~~l~s~~~D~~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v  215 (302)
                      +. -.++.                         ....+++..++.|+.|+.|+||.+.....  .....+..|.+.|++|
T Consensus       417 ~~-~avv~~~~~iv~l~~~~~~~~~~~~y~~s~vAv~~~~~~vaVGG~Dgkvhvysl~g~~l--~ee~~~~~h~a~iT~v  493 (603)
T KOG0318|consen  417 GG-TAVVACISDIVLLQDQTKVSSIPIGYESSAVAVSPDGSEVAVGGQDGKVHVYSLSGDEL--KEEAKLLEHRAAITDV  493 (603)
T ss_pred             CC-EEEEEecCcEEEEecCCcceeeccccccceEEEcCCCCEEEEecccceEEEEEecCCcc--cceeeeecccCCceEE
Confidence            00 00000                         01124577899999999999999987532  1223456799999999


Q ss_pred             EeeCCCCCCccEEEEEecCCeEEEEEeccCCcceeeeeeccCCCcEEEEEEccCCCEEEEecCC-ceEEeeecCCce
Q 022111          216 AWAPNLGLPKSTIASASQDGTVVIWTCAKEGEQWEGRVLKDFKTPVWSVSWSLTGNLLAVADAN-NVTLWKEAVDGE  291 (302)
Q Consensus       216 ~~~p~~~~~~~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~la~~~~d-~i~~w~~~~~~~  291 (302)
                      +||||+    .+||++...+.+-+||+.+...  ....-.-|...|.+++|||+..++|+|+-| .|.+|.+..+..
T Consensus       494 aySpd~----~yla~~Da~rkvv~yd~~s~~~--~~~~w~FHtakI~~~aWsP~n~~vATGSlDt~Viiysv~kP~~  564 (603)
T KOG0318|consen  494 AYSPDG----AYLAAGDASRKVVLYDVASREV--KTNRWAFHTAKINCVAWSPNNKLVATGSLDTNVIIYSVKKPAK  564 (603)
T ss_pred             EECCCC----cEEEEeccCCcEEEEEcccCce--ecceeeeeeeeEEEEEeCCCceEEEeccccceEEEEEccChhh
Confidence            999996    7899999999999999976432  111112367889999999999999999999 799999876544

>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]

Probab=100.00  E-value=1e-31  Score=228.52  Aligned_cols=249  Identities=24%  Similarity=0.416  Sum_probs=202.7

Q ss_pred             cccccccceeEEEEccCCCEEEEeeCCCcEEEEeecCCCceEEEEecCcccCeEEEEeeCCCCCCEEEEEeCCCeEEEEE
Q 022111            6 IETGHEDTVHDVAMDFYGKRLATASSDSSIKIIGLSNSASQHLATLKGHRGPVWQVAWAHPKFGSILASCSYDGQVIIWK   85 (302)
Q Consensus         6 ~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~s~D~~i~iwd   85 (302)
                      ++..|+++|.++.|+..|.+|++++.|+++.+||...+  .....+.-|+.+-..|.|-.   ..-+++++.|+.|+++.
T Consensus       271 tl~~HkgPI~slKWnk~G~yilS~~vD~ttilwd~~~g--~~~q~f~~~s~~~lDVdW~~---~~~F~ts~td~~i~V~k  345 (524)
T KOG0273|consen  271 TLGQHKGPIFSLKWNKKGTYILSGGVDGTTILWDAHTG--TVKQQFEFHSAPALDVDWQS---NDEFATSSTDGCIHVCK  345 (524)
T ss_pred             hhhccCCceEEEEEcCCCCEEEeccCCccEEEEeccCc--eEEEeeeeccCCccceEEec---CceEeecCCCceEEEEE
Confidence            46679999999999999999999999999999998654  34456667888877889964   35789999999999999


Q ss_pred             cCCCCceeEEEEecCCCCCeeEEEecCCCCCcEEEEEecCCcEEEEEecCCCCeeeeeecccCCCCeEEEEeCCCCCCCc
Q 022111           86 EGNQNDWTQAHTFNDHKSSVNSIAWAPHELGLSLACGSSDGNISVFTATADGGWDTTRIDQAHPVGVTSVSWAPAMAPGA  165 (302)
Q Consensus        86 ~~~~~~~~~~~~~~~h~~~i~~l~~~pd~~~~~l~sg~~d~~v~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~  165 (302)
                      +...   .++.++.+|.++|.++.|+|.  +.+|+++|+|++++||.....+..  ..+ ++|...|.++.|+|.+.-..
T Consensus       346 v~~~---~P~~t~~GH~g~V~alk~n~t--g~LLaS~SdD~TlkiWs~~~~~~~--~~l-~~Hskei~t~~wsp~g~v~~  417 (524)
T KOG0273|consen  346 VGED---RPVKTFIGHHGEVNALKWNPT--GSLLASCSDDGTLKIWSMGQSNSV--HDL-QAHSKEIYTIKWSPTGPVTS  417 (524)
T ss_pred             ecCC---CcceeeecccCceEEEEECCC--CceEEEecCCCeeEeeecCCCcch--hhh-hhhccceeeEeecCCCCccC
Confidence            8654   478899999999999999997  789999999999999987654432  333 38888999999999753110


Q ss_pred             eeecccCCCceeEEEeeCCCcEEEEEEecCccccccccccccCCCceeEEEeeCCCCCCccEEEEEecCCeEEEEEeccC
Q 022111          166 LVGLGLLDPVQKLASCGCDNTVKVWKMYNGIWKMDCFPALQMHSDWVRSVAWAPNLGLPKSTIASASQDGTVVIWTCAKE  245 (302)
Q Consensus       166 ~~~~~~~~~~~~l~s~~~D~~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~l~s~s~D~~i~iwd~~~~  245 (302)
                           ....+..|++++.|++|++||+..+    .++.+|..|..+|++|+|+|++    .++|+|+.||.|.||+++..
T Consensus       418 -----n~~~~~~l~sas~dstV~lwdv~~g----v~i~~f~kH~~pVysvafS~~g----~ylAsGs~dg~V~iws~~~~  484 (524)
T KOG0273|consen  418 -----NPNMNLMLASASFDSTVKLWDVESG----VPIHTLMKHQEPVYSVAFSPNG----RYLASGSLDGCVHIWSTKTG  484 (524)
T ss_pred             -----CCcCCceEEEeecCCeEEEEEccCC----ceeEeeccCCCceEEEEecCCC----cEEEecCCCCeeEeccccch
Confidence                 1112567999999999999999987    5678899999999999999996    88999999999999998753


Q ss_pred             Ccceeeeeec--cCCCcEEEEEEccCCCEEEEecCC-ceEEeee
Q 022111          246 GEQWEGRVLK--DFKTPVWSVSWSLTGNLLAVADAN-NVTLWKE  286 (302)
Q Consensus       246 ~~~~~~~~~~--~~~~~v~~~~~spdg~~la~~~~d-~i~~w~~  286 (302)
                      .      +.+  ...+.|..+.||.+|++|.++-+| .+.+-|.
T Consensus       485 ~------l~~s~~~~~~Ifel~Wn~~G~kl~~~~sd~~vcvldl  522 (524)
T KOG0273|consen  485 K------LVKSYQGTGGIFELCWNAAGDKLGACASDGSVCVLDL  522 (524)
T ss_pred             h------eeEeecCCCeEEEEEEcCCCCEEEEEecCCCceEEEe
Confidence            2      222  223458999999999988777666 6776553

>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]

Probab=100.00  E-value=3.4e-32  Score=225.87  Aligned_cols=253  Identities=24%  Similarity=0.391  Sum_probs=198.4

Q ss_pred             ccccccccceeEEEEc-cC--CCEEEEeeCCCcEEEEeecCCCc--eEEEEecCcccCeEEEEeeCCCCCCEEEEEeCCC
Q 022111            5 KIETGHEDTVHDVAMD-FY--GKRLATASSDSSIKIIGLSNSAS--QHLATLKGHRGPVWQVAWAHPKFGSILASCSYDG   79 (302)
Q Consensus         5 ~~~~~h~~~v~~~~~s-~~--~~~l~s~~~d~~v~lw~~~~~~~--~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~s~D~   79 (302)
                      ++..||.++|.++++- ++  ...|+++|.|.++++|.++.+..  +.+....||++.|-+|+..+  +|.+++|||.|.
T Consensus       138 ~~~~Ght~~ik~v~~v~~n~~~~~fvsas~Dqtl~Lw~~~~~~~~~~~~~~~~GHk~~V~sVsv~~--sgtr~~SgS~D~  215 (423)
T KOG0313|consen  138 KTIVGHTGPIKSVAWVIKNSSSCLFVSASMDQTLRLWKWNVGENKVKALKVCRGHKRSVDSVSVDS--SGTRFCSGSWDT  215 (423)
T ss_pred             EEEecCCcceeeeEEEecCCccceEEEecCCceEEEEEecCchhhhhHHhHhcccccceeEEEecC--CCCeEEeecccc
Confidence            4567999999987764 33  23699999999999999865432  22344569999999998764  489999999999


Q ss_pred             eEEEEEcCCC----------------------CceeEEEEecCCCCCeeEEEecCCCCCcEEEEEecCCcEEEEEecCCC
Q 022111           80 QVIIWKEGNQ----------------------NDWTQAHTFNDHKSSVNSIAWAPHELGLSLACGSSDGNISVFTATADG  137 (302)
Q Consensus        80 ~i~iwd~~~~----------------------~~~~~~~~~~~h~~~i~~l~~~pd~~~~~l~sg~~d~~v~~~~~~~~~  137 (302)
                      +++||+....                      ....++-++.+|.++|.++.|++   ...+.++++|.+|+.||+..++
T Consensus       216 ~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~P~vtl~GHt~~Vs~V~w~d---~~v~yS~SwDHTIk~WDletg~  292 (423)
T KOG0313|consen  216 MLKIWSVETDEEDELESSSNRRRKKQKREKEGGTRTPLVTLEGHTEPVSSVVWSD---ATVIYSVSWDHTIKVWDLETGG  292 (423)
T ss_pred             eeeecccCCCccccccccchhhhhhhhhhhcccccCceEEecccccceeeEEEcC---CCceEeecccceEEEEEeeccc
Confidence            9999983210                      01235567889999999999987   3479999999999999998765


Q ss_pred             CeeeeeecccCCCCeEEEEeCCCCCCCceeecccCCCceeEEEeeCCCcEEEEEEecCccccccccccccCCCceeEEEe
Q 022111          138 GWDTTRIDQAHPVGVTSVSWAPAMAPGALVGLGLLDPVQKLASCGCDNTVKVWKMYNGIWKMDCFPALQMHSDWVRSVAW  217 (302)
Q Consensus       138 ~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~D~~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~~  217 (302)
                      ...  .+  ..+...+++..+|.              ..+|++|+.|+.+++||.+++.-.+ ..+.|.||+++|.++.|
T Consensus       293 ~~~--~~--~~~ksl~~i~~~~~--------------~~Ll~~gssdr~irl~DPR~~~gs~-v~~s~~gH~nwVssvkw  353 (423)
T KOG0313|consen  293 LKS--TL--TTNKSLNCISYSPL--------------SKLLASGSSDRHIRLWDPRTGDGSV-VSQSLIGHKNWVSSVKW  353 (423)
T ss_pred             cee--ee--ecCcceeEeecccc--------------cceeeecCCCCceeecCCCCCCCce-eEEeeecchhhhhheec
Confidence            432  11  22345778887774              3789999999999999999875433 34678999999999999


Q ss_pred             eCCCCCCccEEEEEecCCeEEEEEeccCCcceeeeeeccCCCcEEEEEEccCCCEEEEecCC-ceEEeeec
Q 022111          218 APNLGLPKSTIASASQDGTVVIWTCAKEGEQWEGRVLKDFKTPVWSVSWSLTGNLLAVADAN-NVTLWKEA  287 (302)
Q Consensus       218 ~p~~~~~~~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~la~~~~d-~i~~w~~~  287 (302)
                      +|..   ..+|+|||.|+++++||+|+...+.  ..+.+|.+.|.++.|+. +..|++|+.| +|++++..
T Consensus       354 sp~~---~~~~~S~S~D~t~klWDvRS~k~pl--ydI~~h~DKvl~vdW~~-~~~IvSGGaD~~l~i~~~~  418 (423)
T KOG0313|consen  354 SPTN---EFQLVSGSYDNTVKLWDVRSTKAPL--YDIAGHNDKVLSVDWNE-GGLIVSGGADNKLRIFKGS  418 (423)
T ss_pred             CCCC---ceEEEEEecCCeEEEEEeccCCCcc--eeeccCCceEEEEeccC-CceEEeccCcceEEEeccc
Confidence            9975   5789999999999999999876442  23467889999999974 6688899888 79999853

>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]

Probab=100.00  E-value=1.4e-31  Score=242.93  Aligned_cols=251  Identities=28%  Similarity=0.440  Sum_probs=201.4

Q ss_pred             ccccc-ccceeEEEEccCCCEEEEeeCCCcEEEEeecCCCceEEEEecCcccCeEEEEeeCCCCCCEEEEEeCCCeEEEE
Q 022111            6 IETGH-EDTVHDVAMDFYGKRLATASSDSSIKIIGLSNSASQHLATLKGHRGPVWQVAWAHPKFGSILASCSYDGQVIIW   84 (302)
Q Consensus         6 ~~~~h-~~~v~~~~~s~~~~~l~s~~~d~~v~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~s~D~~i~iw   84 (302)
                      ++.+| ...|.++.|+++|+.|++++.|+.+++|+...........+.+|...|..++|+++  ++++++++.|++++||
T Consensus       153 ~~~~~~~~sv~~~~fs~~g~~l~~~~~~~~i~~~~~~~~~~~~~~~l~~h~~~v~~~~fs~d--~~~l~s~s~D~tiriw  230 (456)
T KOG0266|consen  153 TLAGHECPSVTCVDFSPDGRALAAASSDGLIRIWKLEGIKSNLLRELSGHTRGVSDVAFSPD--GSYLLSGSDDKTLRIW  230 (456)
T ss_pred             eecccccCceEEEEEcCCCCeEEEccCCCcEEEeecccccchhhccccccccceeeeEECCC--CcEEEEecCCceEEEe
Confidence            34444 67899999999999999999999999999854321244566899999999999875  7899999999999999


Q ss_pred             EcCCCCceeEEEEecCCCCCeeEEEecCCCCCcEEEEEecCCcEEEEEecCCCCeeeeeecccCCCCeEEEEeCCCCCCC
Q 022111           85 KEGNQNDWTQAHTFNDHKSSVNSIAWAPHELGLSLACGSSDGNISVFTATADGGWDTTRIDQAHPVGVTSVSWAPAMAPG  164 (302)
Q Consensus        85 d~~~~~~~~~~~~~~~h~~~i~~l~~~pd~~~~~l~sg~~d~~v~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~  164 (302)
                      |+....  ..++++.+|...|++++|+|+  +.++++|+.|++|++||++...  ....+ .+|...|++++|++++   
T Consensus       231 d~~~~~--~~~~~l~gH~~~v~~~~f~p~--g~~i~Sgs~D~tvriWd~~~~~--~~~~l-~~hs~~is~~~f~~d~---  300 (456)
T KOG0266|consen  231 DLKDDG--RNLKTLKGHSTYVTSVAFSPD--GNLLVSGSDDGTVRIWDVRTGE--CVRKL-KGHSDGISGLAFSPDG---  300 (456)
T ss_pred             eccCCC--eEEEEecCCCCceEEEEecCC--CCEEEEecCCCcEEEEeccCCe--EEEee-eccCCceEEEEECCCC---
Confidence            994432  477899999999999999998  5799999999999999998632  22333 4899999999999864   


Q ss_pred             ceeecccCCCceeEEEeeCCCcEEEEEEecCccccccccccccCCC--ceeEEEeeCCCCCCccEEEEEecCCeEEEEEe
Q 022111          165 ALVGLGLLDPVQKLASCGCDNTVKVWKMYNGIWKMDCFPALQMHSD--WVRSVAWAPNLGLPKSTIASASQDGTVVIWTC  242 (302)
Q Consensus       165 ~~~~~~~~~~~~~l~s~~~D~~v~iwd~~~~~~~~~~~~~~~~h~~--~v~~v~~~p~~~~~~~~l~s~s~D~~i~iwd~  242 (302)
                                 ..|++++.|+.|+|||+.++...  +...+.++..  +++++.|+|++    .+|++++.|+.+++||+
T Consensus       301 -----------~~l~s~s~d~~i~vwd~~~~~~~--~~~~~~~~~~~~~~~~~~fsp~~----~~ll~~~~d~~~~~w~l  363 (456)
T KOG0266|consen  301 -----------NLLVSASYDGTIRVWDLETGSKL--CLKLLSGAENSAPVTSVQFSPNG----KYLLSASLDRTLKLWDL  363 (456)
T ss_pred             -----------CEEEEcCCCccEEEEECCCCcee--eeecccCCCCCCceeEEEECCCC----cEEEEecCCCeEEEEEc
Confidence                       78999999999999999887421  3445555554  49999999995    78999999999999999


Q ss_pred             ccCCcceeeeeeccCCC---cEEEEEEccCCCEEEEecCC-ceEEeeecC
Q 022111          243 AKEGEQWEGRVLKDFKT---PVWSVSWSLTGNLLAVADAN-NVTLWKEAV  288 (302)
Q Consensus       243 ~~~~~~~~~~~~~~~~~---~v~~~~~spdg~~la~~~~d-~i~~w~~~~  288 (302)
                      +...-.   .....+..   .+.+..++++|+++.+++.| .|.+|+...
T Consensus       364 ~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~i~sg~~d~~v~~~~~~s  410 (456)
T KOG0266|consen  364 RSGKSV---GTYTGHSNLVRCIFSPTLSTGGKLIYSGSEDGSVYVWDSSS  410 (456)
T ss_pred             cCCcce---eeecccCCcceeEecccccCCCCeEEEEeCCceEEEEeCCc
Confidence            864321   22233333   34455668899999999999 799999865

>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]

Probab=100.00  E-value=9.6e-34  Score=233.00  Aligned_cols=233  Identities=20%  Similarity=0.345  Sum_probs=195.1

Q ss_pred             cccceeEEEEccCCCEEEEeeCCCcEEEEeecCCCceEEEEecCcccCeEEEEeeCCCCCCEEEEEeCCCeEEEEEcCCC
Q 022111           10 HEDTVHDVAMDFYGKRLATASSDSSIKIIGLSNSASQHLATLKGHRGPVWQVAWAHPKFGSILASCSYDGQVIIWKEGNQ   89 (302)
Q Consensus        10 h~~~v~~~~~s~~~~~l~s~~~d~~v~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~s~D~~i~iwd~~~~   89 (302)
                      ..+.|+++.++  ...++||..|++|+|||...  ..++..+.||++.|.|+.|.    .+.++|||.|.+|++||.+++
T Consensus       196 ~skgVYClQYD--D~kiVSGlrDnTikiWD~n~--~~c~~~L~GHtGSVLCLqyd----~rviisGSSDsTvrvWDv~tg  267 (499)
T KOG0281|consen  196 NSKGVYCLQYD--DEKIVSGLRDNTIKIWDKNS--LECLKILTGHTGSVLCLQYD----ERVIVSGSSDSTVRVWDVNTG  267 (499)
T ss_pred             cCCceEEEEec--chhhhcccccCceEEecccc--HHHHHhhhcCCCcEEeeecc----ceEEEecCCCceEEEEeccCC
Confidence            34678887654  56899999999999999754  56778899999999999994    468999999999999999886


Q ss_pred             CceeEEEEecCCCCCeeEEEecCCCCCcEEEEEecCCcEEEEEecCCCCeeeeeecccCCCCeEEEEeCCCCCCCceeec
Q 022111           90 NDWTQAHTFNDHKSSVNSIAWAPHELGLSLACGSSDGNISVFTATADGGWDTTRIDQAHPVGVTSVSWAPAMAPGALVGL  169 (302)
Q Consensus        90 ~~~~~~~~~~~h~~~i~~l~~~pd~~~~~l~sg~~d~~v~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~  169 (302)
                         .+++++-+|.+.|..+.|+.   | ++++++.|.++++||+.............+|...|+.+.|+.          
T Consensus       268 ---e~l~tlihHceaVLhlrf~n---g-~mvtcSkDrsiaVWdm~sps~it~rrVLvGHrAaVNvVdfd~----------  330 (499)
T KOG0281|consen  268 ---EPLNTLIHHCEAVLHLRFSN---G-YMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFDD----------  330 (499)
T ss_pred             ---chhhHHhhhcceeEEEEEeC---C-EEEEecCCceeEEEeccCchHHHHHHHHhhhhhheeeecccc----------
Confidence               47888889999999999984   2 799999999999999976543333344458999999998753          


Q ss_pred             ccCCCceeEEEeeCCCcEEEEEEecCccccccccccccCCCceeEEEeeCCCCCCccEEEEEecCCeEEEEEeccCCcce
Q 022111          170 GLLDPVQKLASCGCDNTVKVWKMYNGIWKMDCFPALQMHSDWVRSVAWAPNLGLPKSTIASASQDGTVVIWTCAKEGEQW  249 (302)
Q Consensus       170 ~~~~~~~~l~s~~~D~~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~l~s~s~D~~i~iwd~~~~~~~~  249 (302)
                            ++++|++.|++|++|++.++    .+++++.||+-.|.|+.+.      +..++|||.|.+||+||+....   
T Consensus       331 ------kyIVsASgDRTikvW~~st~----efvRtl~gHkRGIAClQYr------~rlvVSGSSDntIRlwdi~~G~---  391 (499)
T KOG0281|consen  331 ------KYIVSASGDRTIKVWSTSTC----EFVRTLNGHKRGIACLQYR------DRLVVSGSSDNTIRLWDIECGA---  391 (499)
T ss_pred             ------ceEEEecCCceEEEEeccce----eeehhhhcccccceehhcc------CeEEEecCCCceEEEEeccccH---
Confidence                  79999999999999999887    6788999999999998764      5789999999999999997642   


Q ss_pred             eeeeeccCCCcEEEEEEccCCCEEEEecCC-ceEEeeecC
Q 022111          250 EGRVLKDFKTPVWSVSWSLTGNLLAVADAN-NVTLWKEAV  288 (302)
Q Consensus       250 ~~~~~~~~~~~v~~~~~spdg~~la~~~~d-~i~~w~~~~  288 (302)
                      ..+++.+|++-|..+.|  |.+.|++|.=| +|++|+...
T Consensus       392 cLRvLeGHEeLvRciRF--d~krIVSGaYDGkikvWdl~a  429 (499)
T KOG0281|consen  392 CLRVLEGHEELVRCIRF--DNKRIVSGAYDGKIKVWDLQA  429 (499)
T ss_pred             HHHHHhchHHhhhheee--cCceeeeccccceEEEEeccc
Confidence            23567888888999999  56788888777 799999743

>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=100.00  E-value=2.2e-31  Score=237.65  Aligned_cols=244  Identities=21%  Similarity=0.360  Sum_probs=198.2

Q ss_pred             cceeEEEEccCCCEEEEeeCC-CcEEEEeecCCCceEEEEecCcccCeEEEEeeCCCCCCEEEEEeCCCeEEEEEcCCCC
Q 022111           12 DTVHDVAMDFYGKRLATASSD-SSIKIIGLSNSASQHLATLKGHRGPVWQVAWAHPKFGSILASCSYDGQVIIWKEGNQN   90 (302)
Q Consensus        12 ~~v~~~~~s~~~~~l~s~~~d-~~v~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~s~D~~i~iwd~~~~~   90 (302)
                      ..|..++|+..|.+||-|+.- |++-+|++..+.  .+....+|...+.+++|+|+  |.++|||+.|+.|||||..++ 
T Consensus       308 ~~I~t~~~N~tGDWiA~g~~klgQLlVweWqsEs--YVlKQQgH~~~i~~l~YSpD--gq~iaTG~eDgKVKvWn~~Sg-  382 (893)
T KOG0291|consen  308 QKILTVSFNSTGDWIAFGCSKLGQLLVWEWQSES--YVLKQQGHSDRITSLAYSPD--GQLIATGAEDGKVKVWNTQSG-  382 (893)
T ss_pred             ceeeEEEecccCCEEEEcCCccceEEEEEeeccc--eeeeccccccceeeEEECCC--CcEEEeccCCCcEEEEeccCc-
Confidence            457788899899999988754 899999997643  45667899999999999875  899999999999999998665 


Q ss_pred             ceeEEEEecCCCCCeeEEEecCCCCCcEEEEEecCCcEEEEEecCCCCeeeeeecccCCCCeEEEEeCCCCCCCceeecc
Q 022111           91 DWTQAHTFNDHKSSVNSIAWAPHELGLSLACGSSDGNISVFTATADGGWDTTRIDQAHPVGVTSVSWAPAMAPGALVGLG  170 (302)
Q Consensus        91 ~~~~~~~~~~h~~~i~~l~~~pd~~~~~l~sg~~d~~v~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~  170 (302)
                        .|..+|..|+..|+.+.|+..  +..+.+.+.||+|+.||+..-..+.  .+....+.+..+++-.|.          
T Consensus       383 --fC~vTFteHts~Vt~v~f~~~--g~~llssSLDGtVRAwDlkRYrNfR--Tft~P~p~QfscvavD~s----------  446 (893)
T KOG0291|consen  383 --FCFVTFTEHTSGVTAVQFTAR--GNVLLSSSLDGTVRAWDLKRYRNFR--TFTSPEPIQFSCVAVDPS----------  446 (893)
T ss_pred             --eEEEEeccCCCceEEEEEEec--CCEEEEeecCCeEEeeeecccceee--eecCCCceeeeEEEEcCC----------
Confidence              589999999999999999976  6799999999999999997543333  332233455667776665          


Q ss_pred             cCCCceeEEEeeCCCc-EEEEEEecCccccccccccccCCCceeEEEeeCCCCCCccEEEEEecCCeEEEEEeccCCcce
Q 022111          171 LLDPVQKLASCGCDNT-VKVWKMYNGIWKMDCFPALQMHSDWVRSVAWAPNLGLPKSTIASASQDGTVVIWTCAKEGEQW  249 (302)
Q Consensus       171 ~~~~~~~l~s~~~D~~-v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~l~s~s~D~~i~iwd~~~~~~~~  249 (302)
                          |..+..|+.|.. |++|++.++    ..+..+.||+++|.+++|+|++    +.|+|+|.|++||+||+-....+ 
T Consensus       447 ----GelV~AG~~d~F~IfvWS~qTG----qllDiLsGHEgPVs~l~f~~~~----~~LaS~SWDkTVRiW~if~s~~~-  513 (893)
T KOG0291|consen  447 ----GELVCAGAQDSFEIFVWSVQTG----QLLDILSGHEGPVSGLSFSPDG----SLLASGSWDKTVRIWDIFSSSGT-  513 (893)
T ss_pred             ----CCEEEeeccceEEEEEEEeecC----eeeehhcCCCCcceeeEEcccc----CeEEeccccceEEEEEeeccCce-
Confidence                367777777774 999999998    4567889999999999999985    78999999999999998654221 


Q ss_pred             eeeeeccCCCcEEEEEEccCCCEEEEecCC-ceEEeeecCCce
Q 022111          250 EGRVLKDFKTPVWSVSWSLTGNLLAVADAN-NVTLWKEAVDGE  291 (302)
Q Consensus       250 ~~~~~~~~~~~v~~~~~spdg~~la~~~~d-~i~~w~~~~~~~  291 (302)
                       .+. .+....+.+++|+|||+.||++.-| .|.+||..++.+
T Consensus       514 -vEt-l~i~sdvl~vsfrPdG~elaVaTldgqItf~d~~~~~q  554 (893)
T KOG0291|consen  514 -VET-LEIRSDVLAVSFRPDGKELAVATLDGQITFFDIKEAVQ  554 (893)
T ss_pred             -eee-EeeccceeEEEEcCCCCeEEEEEecceEEEEEhhhcee
Confidence             122 2445679999999999999999999 799999865443

>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=2.7e-32  Score=215.81  Aligned_cols=247  Identities=28%  Similarity=0.456  Sum_probs=201.6

Q ss_pred             cccceeEEEEccCC-CEEEEeeCCCcEEEEeecCCCceEEEEecCcccCeEEEEeeCCCCCCEEEEEeCCCeEEEEEcCC
Q 022111           10 HEDTVHDVAMDFYG-KRLATASSDSSIKIIGLSNSASQHLATLKGHRGPVWQVAWAHPKFGSILASCSYDGQVIIWKEGN   88 (302)
Q Consensus        10 h~~~v~~~~~s~~~-~~l~s~~~d~~v~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~s~D~~i~iwd~~~   88 (302)
                      -++.+.+++|+++. ..+++++-||.++|||... +..++..++.|..+|.++.|+. .....++++|.|++||+|+...
T Consensus        59 ~~D~LfdV~Wse~~e~~~~~a~GDGSLrl~d~~~-~s~Pi~~~kEH~~EV~Svdwn~-~~r~~~ltsSWD~TiKLW~~~r  136 (311)
T KOG0277|consen   59 TEDGLFDVAWSENHENQVIAASGDGSLRLFDLTM-PSKPIHKFKEHKREVYSVDWNT-VRRRIFLTSSWDGTIKLWDPNR  136 (311)
T ss_pred             cccceeEeeecCCCcceEEEEecCceEEEeccCC-CCcchhHHHhhhhheEEecccc-ccceeEEeeccCCceEeecCCC
Confidence            35678899999874 6888889999999999653 4457889999999999999975 4567788889999999999865


Q ss_pred             CCceeEEEEecCCCCCeeEEEecCCCCCcEEEEEecCCcEEEEEecCCCCeeeeeecccCCCCeEEEEeCCCCCCCceee
Q 022111           89 QNDWTQAHTFNDHKSSVNSIAWAPHELGLSLACGSSDGNISVFTATADGGWDTTRIDQAHPVGVTSVSWAPAMAPGALVG  168 (302)
Q Consensus        89 ~~~~~~~~~~~~h~~~i~~l~~~pd~~~~~l~sg~~d~~v~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~  168 (302)
                      .+   .+.+|++|+.-|....|+|.. +..++++|.|+++++||++..+....  ++ .|...+.++.|+...       
T Consensus       137 ~~---Sv~Tf~gh~~~Iy~a~~sp~~-~nlfas~Sgd~~l~lwdvr~~gk~~~--i~-ah~~Eil~cdw~ky~-------  202 (311)
T KOG0277|consen  137 PN---SVQTFNGHNSCIYQAAFSPHI-PNLFASASGDGTLRLWDVRSPGKFMS--IE-AHNSEILCCDWSKYN-------  202 (311)
T ss_pred             Cc---ceEeecCCccEEEEEecCCCC-CCeEEEccCCceEEEEEecCCCceeE--EE-eccceeEeecccccC-------
Confidence            53   577899999999999999985 56899999999999999987654332  43 788899999998643       


Q ss_pred             cccCCCceeEEEeeCCCcEEEEEEecCccccccccccccCCCceeEEEeeCCCCCCccEEEEEecCCeEEEEEeccCCcc
Q 022111          169 LGLLDPVQKLASCGCDNTVKVWKMYNGIWKMDCFPALQMHSDWVRSVAWAPNLGLPKSTIASASQDGTVVIWTCAKEGEQ  248 (302)
Q Consensus       169 ~~~~~~~~~l~s~~~D~~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~l~s~s~D~~i~iwd~~~~~~~  248 (302)
                            ...|+||+.|+.||+||++.-.   ..+..+.+|.-.|+.|.|||..   ...|||+|.|=++||||...+...
T Consensus       203 ------~~vl~Tg~vd~~vr~wDir~~r---~pl~eL~gh~~AVRkvk~Sph~---~~lLaSasYDmT~riw~~~~~ds~  270 (311)
T KOG0277|consen  203 ------HNVLATGGVDNLVRGWDIRNLR---TPLFELNGHGLAVRKVKFSPHH---ASLLASASYDMTVRIWDPERQDSA  270 (311)
T ss_pred             ------CcEEEecCCCceEEEEehhhcc---ccceeecCCceEEEEEecCcch---hhHhhhccccceEEecccccchhh
Confidence                  3689999999999999998653   3356778999999999999974   478999999999999998754321


Q ss_pred             eeeeeeccCCCcEEEEEEcc-CCCEEEEecCC-ceEEeee
Q 022111          249 WEGRVLKDFKTPVWSVSWSL-TGNLLAVADAN-NVTLWKE  286 (302)
Q Consensus       249 ~~~~~~~~~~~~v~~~~~sp-dg~~la~~~~d-~i~~w~~  286 (302)
                        .+....|.+-+..+.||+ ++.++|+.+=| .+.+|+.
T Consensus       271 --~e~~~~HtEFv~g~Dws~~~~~~vAs~gWDe~l~Vw~p  308 (311)
T KOG0277|consen  271 --IETVDHHTEFVCGLDWSLFDPGQVASTGWDELLYVWNP  308 (311)
T ss_pred             --hhhhhccceEEeccccccccCceeeecccccceeeecc
Confidence              122345666689999998 66788888888 7999973

>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=1.2e-31  Score=234.96  Aligned_cols=244  Identities=23%  Similarity=0.337  Sum_probs=200.2

Q ss_pred             cccceeEEEEccCCCEEEEeeCCCcEEEEeecCCCceEEEEecCcccCeEEEEeeCCCCCCEEEEEeCCCeEEEEEcCCC
Q 022111           10 HEDTVHDVAMDFYGKRLATASSDSSIKIIGLSNSASQHLATLKGHRGPVWQVAWAHPKFGSILASCSYDGQVIIWKEGNQ   89 (302)
Q Consensus        10 h~~~v~~~~~s~~~~~l~s~~~d~~v~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~s~D~~i~iwd~~~~   89 (302)
                      -+.+|.++.|-.--+++++|++|..||+|+..+  .+.+.+|.+|++.|++|+..| + -.++.|+|.|-+|++||.+. 
T Consensus        54 ~~~PvRa~kfiaRknWiv~GsDD~~IrVfnynt--~ekV~~FeAH~DyIR~iavHP-t-~P~vLtsSDDm~iKlW~we~-  128 (794)
T KOG0276|consen   54 SEVPVRAAKFIARKNWIVTGSDDMQIRVFNYNT--GEKVKTFEAHSDYIRSIAVHP-T-LPYVLTSSDDMTIKLWDWEN-  128 (794)
T ss_pred             cccchhhheeeeccceEEEecCCceEEEEeccc--ceeeEEeeccccceeeeeecC-C-CCeEEecCCccEEEEeeccC-
Confidence            345677777776678999999999999999864  567889999999999999854 4 35888999999999999865 


Q ss_pred             CceeEEEEecCCCCCeeEEEecCCCCCcEEEEEecCCcEEEEEecCCCCeeeeeecccCCCCeEEEEeCCCCCCCceeec
Q 022111           90 NDWTQAHTFNDHKSSVNSIAWAPHELGLSLACGSSDGNISVFTATADGGWDTTRIDQAHPVGVTSVSWAPAMAPGALVGL  169 (302)
Q Consensus        90 ~~~~~~~~~~~h~~~i~~l~~~pd~~~~~l~sg~~d~~v~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~  169 (302)
                       .|.+.++|.+|...|.+++|+|.++ ..+|+++.|++|++|.+....  ....+. +|...|+++.+-+.+        
T Consensus       129 -~wa~~qtfeGH~HyVMqv~fnPkD~-ntFaS~sLDrTVKVWslgs~~--~nfTl~-gHekGVN~Vdyy~~g--------  195 (794)
T KOG0276|consen  129 -EWACEQTFEGHEHYVMQVAFNPKDP-NTFASASLDRTVKVWSLGSPH--PNFTLE-GHEKGVNCVDYYTGG--------  195 (794)
T ss_pred             -ceeeeeEEcCcceEEEEEEecCCCc-cceeeeeccccEEEEEcCCCC--Cceeee-ccccCcceEEeccCC--------
Confidence             4789999999999999999999864 579999999999999986542  234454 999999999997753        


Q ss_pred             ccCCCceeEEEeeCCCcEEEEEEecCccccccccccccCCCceeEEEeeCCCCCCccEEEEEecCCeEEEEEeccCCcce
Q 022111          170 GLLDPVQKLASCGCDNTVKVWKMYNGIWKMDCFPALQMHSDWVRSVAWAPNLGLPKSTIASASQDGTVVIWTCAKEGEQW  249 (302)
Q Consensus       170 ~~~~~~~~l~s~~~D~~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~l~s~s~D~~i~iwd~~~~~~~~  249 (302)
                          +.-+|+||+.|.+++|||..+.    .|++++.||...|..+.|+|..    ..|+|||+||++|||+..+-..  
T Consensus       196 ----dkpylIsgaDD~tiKvWDyQtk----~CV~TLeGHt~Nvs~v~fhp~l----piiisgsEDGTvriWhs~Ty~l--  261 (794)
T KOG0276|consen  196 ----DKPYLISGADDLTIKVWDYQTK----SCVQTLEGHTNNVSFVFFHPEL----PIIISGSEDGTVRIWNSKTYKL--  261 (794)
T ss_pred             ----CcceEEecCCCceEEEeecchH----HHHHHhhcccccceEEEecCCC----cEEEEecCCccEEEecCcceeh--
Confidence                2358999999999999999875    7999999999999999999986    6899999999999998654211  


Q ss_pred             eeeeeccCCCcEEEEEEccCCCEEEEecCCceEEeee
Q 022111          250 EGRVLKDFKTPVWSVSWSLTGNLLAVADANNVTLWKE  286 (302)
Q Consensus       250 ~~~~~~~~~~~v~~~~~spdg~~la~~~~d~i~~w~~  286 (302)
                       ...+.-..+.+|+++-.+.++.+++|.+++..+-+.
T Consensus       262 -E~tLn~gleRvW~I~~~k~~~~i~vG~Deg~i~v~l  297 (794)
T KOG0276|consen  262 -EKTLNYGLERVWCIAAHKGDGKIAVGFDEGSVTVKL  297 (794)
T ss_pred             -hhhhhcCCceEEEEeecCCCCeEEEeccCCcEEEEc
Confidence             112222236799999999888899997776555543

>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]

Probab=100.00  E-value=1.3e-31  Score=227.07  Aligned_cols=258  Identities=21%  Similarity=0.373  Sum_probs=204.9

Q ss_pred             ccccceeEEEEccCC-CEEEEeeCCCcEEEEeecCCCceE--------EEEecCcccCeEEEEeeCCCCCCEEEEEeCCC
Q 022111            9 GHEDTVHDVAMDFYG-KRLATASSDSSIKIIGLSNSASQH--------LATLKGHRGPVWQVAWAHPKFGSILASCSYDG   79 (302)
Q Consensus         9 ~h~~~v~~~~~s~~~-~~l~s~~~d~~v~lw~~~~~~~~~--------~~~~~~h~~~v~~v~~~~~~~~~~l~s~s~D~   79 (302)
                      -|.+.|+.++.-|+. ..+|+.+..+.|.|||.......+        -..|.+|++.-++++|++.. .-.|++++.|+
T Consensus       122 ~h~gEVnRaRymPQnp~iVAt~t~~~dv~Vfd~tk~~s~~~~~~~~~Pdl~L~gH~~eg~glsWn~~~-~g~Lls~~~d~  200 (422)
T KOG0264|consen  122 NHDGEVNRARYMPQNPNIVATKTSSGDVYVFDYTKHPSKPKASGECRPDLRLKGHEKEGYGLSWNRQQ-EGTLLSGSDDH  200 (422)
T ss_pred             cCCccchhhhhCCCCCcEEEecCCCCCEEEEEeccCCCcccccccCCCceEEEeeccccccccccccc-ceeEeeccCCC
Confidence            588999999988876 677888899999999986433222        23788999988899998754 34678999999


Q ss_pred             eEEEEEcCCCCc----eeEEEEecCCCCCeeEEEecCCCCCcEEEEEecCCcEEEEEecCCCCeeeeeecccCCCCeEEE
Q 022111           80 QVIIWKEGNQND----WTQAHTFNDHKSSVNSIAWAPHELGLSLACGSSDGNISVFTATADGGWDTTRIDQAHPVGVTSV  155 (302)
Q Consensus        80 ~i~iwd~~~~~~----~~~~~~~~~h~~~i~~l~~~pd~~~~~l~sg~~d~~v~~~~~~~~~~~~~~~~~~~h~~~v~~~  155 (302)
                      +|++||+.....    ..+...+.+|...|..++|+|-. ..+++++++|+.+.|||.+.. .........+|...+.++
T Consensus       201 ~i~lwdi~~~~~~~~~~~p~~~~~~h~~~VeDV~~h~~h-~~lF~sv~dd~~L~iwD~R~~-~~~~~~~~~ah~~~vn~~  278 (422)
T KOG0264|consen  201 TICLWDINAESKEDKVVDPKTIFSGHEDVVEDVAWHPLH-EDLFGSVGDDGKLMIWDTRSN-TSKPSHSVKAHSAEVNCV  278 (422)
T ss_pred             cEEEEeccccccCCccccceEEeecCCcceehhhccccc-hhhheeecCCCeEEEEEcCCC-CCCCcccccccCCceeEE
Confidence            999999964332    33556788999999999999874 457999999999999999952 222333335899999999


Q ss_pred             EeCCCCCCCceeecccCCCceeEEEeeCCCcEEEEEEecCccccccccccccCCCceeEEEeeCCCCCCccEEEEEecCC
Q 022111          156 SWAPAMAPGALVGLGLLDPVQKLASCGCDNTVKVWKMYNGIWKMDCFPALQMHSDWVRSVAWAPNLGLPKSTIASASQDG  235 (302)
Q Consensus       156 ~~~~~~~~~~~~~~~~~~~~~~l~s~~~D~~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~l~s~s~D~  235 (302)
                      +|+|..             +..|||||.|++|+|||+++-.   .++.++.+|++.|.+|.|+|..   ...|||++.|+
T Consensus       279 ~fnp~~-------------~~ilAT~S~D~tV~LwDlRnL~---~~lh~~e~H~dev~~V~WSPh~---etvLASSg~D~  339 (422)
T KOG0264|consen  279 AFNPFN-------------EFILATGSADKTVALWDLRNLN---KPLHTFEGHEDEVFQVEWSPHN---ETVLASSGTDR  339 (422)
T ss_pred             EeCCCC-------------CceEEeccCCCcEEEeechhcc---cCceeccCCCcceEEEEeCCCC---CceeEecccCC
Confidence            999964             4689999999999999999754   3678899999999999999985   57899999999


Q ss_pred             eEEEEEeccCCccee--------ee---eeccCCCcEEEEEEccCCC-EEEEecCC-ceEEeeecC
Q 022111          236 TVVIWTCAKEGEQWE--------GR---VLKDFKTPVWSVSWSLTGN-LLAVADAN-NVTLWKEAV  288 (302)
Q Consensus       236 ~i~iwd~~~~~~~~~--------~~---~~~~~~~~v~~~~~spdg~-~la~~~~d-~i~~w~~~~  288 (302)
                      .+.+||+..-++...        .+   +..+|...|..++|+|+.. .|++++.| .+.||++++
T Consensus       340 rl~vWDls~ig~eq~~eda~dgppEllF~HgGH~~kV~DfsWnp~ePW~I~SvaeDN~LqIW~~s~  405 (422)
T KOG0264|consen  340 RLNVWDLSRIGEEQSPEDAEDGPPELLFIHGGHTAKVSDFSWNPNEPWTIASVAEDNILQIWQMAE  405 (422)
T ss_pred             cEEEEeccccccccChhhhccCCcceeEEecCcccccccccCCCCCCeEEEEecCCceEEEeeccc
Confidence            999999976432210        11   2367888999999999875 44666666 699999873

>PLN00181 protein SPA1-RELATED; Provisional

Probab=100.00  E-value=7.8e-30  Score=246.99  Aligned_cols=249  Identities=20%  Similarity=0.283  Sum_probs=193.6

Q ss_pred             cccccceeEEEEccCCCEEEEeeCCCcEEEEeecCCC------ceEEEEecCcccCeEEEEeeCCCCCCEEEEEeCCCeE
Q 022111            8 TGHEDTVHDVAMDFYGKRLATASSDSSIKIIGLSNSA------SQHLATLKGHRGPVWQVAWAHPKFGSILASCSYDGQV   81 (302)
Q Consensus         8 ~~h~~~v~~~~~s~~~~~l~s~~~d~~v~lw~~~~~~------~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~s~D~~i   81 (302)
                      .+|...|.+++|++++++||+|+.|++|+||+.....      ..+...+.+ ...|.+++|+++ .+.+||+++.|++|
T Consensus       480 ~~~~~~V~~i~fs~dg~~latgg~D~~I~iwd~~~~~~~~~~~~~~~~~~~~-~~~v~~l~~~~~-~~~~las~~~Dg~v  557 (793)
T PLN00181        480 LNSSNLVCAIGFDRDGEFFATAGVNKKIKIFECESIIKDGRDIHYPVVELAS-RSKLSGICWNSY-IKSQVASSNFEGVV  557 (793)
T ss_pred             cCCCCcEEEEEECCCCCEEEEEeCCCEEEEEECCcccccccccccceEEecc-cCceeeEEeccC-CCCEEEEEeCCCeE
Confidence            3589999999999999999999999999999974310      012233443 457899999764 46899999999999


Q ss_pred             EEEEcCCCCceeEEEEecCCCCCeeEEEecCCCCCcEEEEEecCCcEEEEEecCCCCeeeeeecccCCCCeEEEEeCCCC
Q 022111           82 IIWKEGNQNDWTQAHTFNDHKSSVNSIAWAPHELGLSLACGSSDGNISVFTATADGGWDTTRIDQAHPVGVTSVSWAPAM  161 (302)
Q Consensus        82 ~iwd~~~~~~~~~~~~~~~h~~~i~~l~~~pd~~~~~l~sg~~d~~v~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~  161 (302)
                      ++||+.+.   ..+..+.+|.+.|.+++|+|.. +.+|++|+.|++|++||+......  ..+.  +...+.++.|.+..
T Consensus       558 ~lWd~~~~---~~~~~~~~H~~~V~~l~~~p~~-~~~L~Sgs~Dg~v~iWd~~~~~~~--~~~~--~~~~v~~v~~~~~~  629 (793)
T PLN00181        558 QVWDVARS---QLVTEMKEHEKRVWSIDYSSAD-PTLLASGSDDGSVKLWSINQGVSI--GTIK--TKANICCVQFPSES  629 (793)
T ss_pred             EEEECCCC---eEEEEecCCCCCEEEEEEcCCC-CCEEEEEcCCCEEEEEECCCCcEE--EEEe--cCCCeEEEEEeCCC
Confidence            99998765   3567788999999999999742 568999999999999998754322  2222  23568888886532


Q ss_pred             CCCceeecccCCCceeEEEeeCCCcEEEEEEecCccccccccccccCCCceeEEEeeCCCCCCccEEEEEecCCeEEEEE
Q 022111          162 APGALVGLGLLDPVQKLASCGCDNTVKVWKMYNGIWKMDCFPALQMHSDWVRSVAWAPNLGLPKSTIASASQDGTVVIWT  241 (302)
Q Consensus       162 ~~~~~~~~~~~~~~~~l~s~~~D~~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~l~s~s~D~~i~iwd  241 (302)
                                   +..|++|+.|+.|++||+++..   ..+..+.+|...|.++.|.+     +..|++++.|++|+|||
T Consensus       630 -------------g~~latgs~dg~I~iwD~~~~~---~~~~~~~~h~~~V~~v~f~~-----~~~lvs~s~D~~ikiWd  688 (793)
T PLN00181        630 -------------GRSLAFGSADHKVYYYDLRNPK---LPLCTMIGHSKTVSYVRFVD-----SSTLVSSSTDNTLKLWD  688 (793)
T ss_pred             -------------CCEEEEEeCCCeEEEEECCCCC---ccceEecCCCCCEEEEEEeC-----CCEEEEEECCCEEEEEe
Confidence                         5789999999999999998652   12345678999999999973     26799999999999999


Q ss_pred             eccCCc---ceeeeeeccCCCcEEEEEEccCCCEEEEecCC-ceEEeeec
Q 022111          242 CAKEGE---QWEGRVLKDFKTPVWSVSWSLTGNLLAVADAN-NVTLWKEA  287 (302)
Q Consensus       242 ~~~~~~---~~~~~~~~~~~~~v~~~~~spdg~~la~~~~d-~i~~w~~~  287 (302)
                      ++....   ......+.+|...+..++|+|++.+|++|+.| .|++|+..
T Consensus       689 ~~~~~~~~~~~~l~~~~gh~~~i~~v~~s~~~~~lasgs~D~~v~iw~~~  738 (793)
T PLN00181        689 LSMSISGINETPLHSFMGHTNVKNFVGLSVSDGYIATGSETNEVFVYHKA  738 (793)
T ss_pred             CCCCccccCCcceEEEcCCCCCeeEEEEcCCCCEEEEEeCCCEEEEEECC
Confidence            874210   00112345677889999999999999999988 79999964

>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.98  E-value=2.5e-30  Score=202.67  Aligned_cols=249  Identities=18%  Similarity=0.258  Sum_probs=194.3

Q ss_pred             ccccccceeEEEEccCCCEEEEeeCCCcEEEEeecCCCceEEEEecCcccCeEEEEeeCCCCCCEEEEEeCCCeEEEEEc
Q 022111            7 ETGHEDTVHDVAMDFYGKRLATASSDSSIKIIGLSNSASQHLATLKGHRGPVWQVAWAHPKFGSILASCSYDGQVIIWKE   86 (302)
Q Consensus         7 ~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~s~D~~i~iwd~   86 (302)
                      +..|+++|..+.|+.||++.++||.|++||||+...  +..+.+..+|...|..++.+.+  +..+++|+.|+.+.+||+
T Consensus        13 l~~~qgaV~avryN~dGnY~ltcGsdrtvrLWNp~r--g~liktYsghG~EVlD~~~s~D--nskf~s~GgDk~v~vwDV   88 (307)
T KOG0316|consen   13 LDCAQGAVRAVRYNVDGNYCLTCGSDRTVRLWNPLR--GALIKTYSGHGHEVLDAALSSD--NSKFASCGGDKAVQVWDV   88 (307)
T ss_pred             ecccccceEEEEEccCCCEEEEcCCCceEEeecccc--cceeeeecCCCceeeecccccc--ccccccCCCCceEEEEEc
Confidence            467999999999999999999999999999999865  4578899999999999987754  678999999999999999


Q ss_pred             CCCCceeEEEEecCCCCCeeEEEecCCCCCcEEEEEecCCcEEEEEecCCCCeeeeeecccCCCCeEEEEeCCCCCCCce
Q 022111           87 GNQNDWTQAHTFNDHKSSVNSIAWAPHELGLSLACGSSDGNISVFTATADGGWDTTRIDQAHPVGVTSVSWAPAMAPGAL  166 (302)
Q Consensus        87 ~~~~~~~~~~~~~~h~~~i~~l~~~pd~~~~~l~sg~~d~~v~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~  166 (302)
                      ++++   ....|.+|.+.|+.+.|+.+  ...+++|+.|.++++||-+.... .+.++.......|.++..+        
T Consensus        89 ~TGk---v~Rr~rgH~aqVNtV~fNee--sSVv~SgsfD~s~r~wDCRS~s~-ePiQildea~D~V~Si~v~--------  154 (307)
T KOG0316|consen   89 NTGK---VDRRFRGHLAQVNTVRFNEE--SSVVASGSFDSSVRLWDCRSRSF-EPIQILDEAKDGVSSIDVA--------  154 (307)
T ss_pred             ccCe---eeeecccccceeeEEEecCc--ceEEEeccccceeEEEEcccCCC-CccchhhhhcCceeEEEec--------
Confidence            8874   67789999999999999866  45899999999999999875432 2222222345567776653        


Q ss_pred             eecccCCCceeEEEeeCCCcEEEEEEecCccccccccccccCCCceeEEEeeCCCCCCccEEEEEecCCeEEEEEeccCC
Q 022111          167 VGLGLLDPVQKLASCGCDNTVKVWKMYNGIWKMDCFPALQMHSDWVRSVAWAPNLGLPKSTIASASQDGTVVIWTCAKEG  246 (302)
Q Consensus       167 ~~~~~~~~~~~l~s~~~D~~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~l~s~s~D~~i~iwd~~~~~  246 (302)
                              +..|++|+.||++|.||++.+....    ..  ...+|+|++|+||+    +..+.++.|++||+-|-.+.+
T Consensus       155 --------~heIvaGS~DGtvRtydiR~G~l~s----Dy--~g~pit~vs~s~d~----nc~La~~l~stlrLlDk~tGk  216 (307)
T KOG0316|consen  155 --------EHEIVAGSVDGTVRTYDIRKGTLSS----DY--FGHPITSVSFSKDG----NCSLASSLDSTLRLLDKETGK  216 (307)
T ss_pred             --------ccEEEeeccCCcEEEEEeecceeeh----hh--cCCcceeEEecCCC----CEEEEeeccceeeecccchhH
Confidence                    3579999999999999999874221    12  24569999999996    789999999999998865421


Q ss_pred             cceeeeeeccCCCc--EEEEEEccCCCEEEEecCC-ceEEeeecCCceEEE
Q 022111          247 EQWEGRVLKDFKTP--VWSVSWSLTGNLLAVADAN-NVTLWKEAVDGEWQQ  294 (302)
Q Consensus       247 ~~~~~~~~~~~~~~--v~~~~~spdg~~la~~~~d-~i~~w~~~~~~~~~~  294 (302)
                      .  . ...++|...  -..+.++.....+++++.| .+.+||..++.+.-.
T Consensus       217 l--L-~sYkGhkn~eykldc~l~qsdthV~sgSEDG~Vy~wdLvd~~~~sk  264 (307)
T KOG0316|consen  217 L--L-KSYKGHKNMEYKLDCCLNQSDTHVFSGSEDGKVYFWDLVDETQISK  264 (307)
T ss_pred             H--H-HHhcccccceeeeeeeecccceeEEeccCCceEEEEEeccceeeee
Confidence            1  0 111344332  3356788778899999999 699999865544433

>KOG0293 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.98  E-value=1.4e-30  Score=218.43  Aligned_cols=264  Identities=23%  Similarity=0.366  Sum_probs=195.9

Q ss_pred             cccccccccceeEEEEccCCCEEEEeeCCCcEEEEeecCCC-ceEEEEecCcccCeEEEEeeCCCCCCEEEEEeCCCeEE
Q 022111            4 QKIETGHEDTVHDVAMDFYGKRLATASSDSSIKIIGLSNSA-SQHLATLKGHRGPVWQVAWAHPKFGSILASCSYDGQVI   82 (302)
Q Consensus         4 ~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~lw~~~~~~-~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~s~D~~i~   82 (302)
                      ++++..|.++|+-+.||++|++|||++.|.+..+|.+.... .+...++-+|..+|.-|.|+|+  .++|++|+.|..++
T Consensus       217 ~qil~~htdEVWfl~FS~nGkyLAsaSkD~Taiiw~v~~d~~~kl~~tlvgh~~~V~yi~wSPD--dryLlaCg~~e~~~  294 (519)
T KOG0293|consen  217 WQILQDHTDEVWFLQFSHNGKYLASASKDSTAIIWIVVYDVHFKLKKTLVGHSQPVSYIMWSPD--DRYLLACGFDEVLS  294 (519)
T ss_pred             hhhHhhCCCcEEEEEEcCCCeeEeeccCCceEEEEEEecCcceeeeeeeecccCceEEEEECCC--CCeEEecCchHhee
Confidence            46788999999999999999999999999999999985422 4456788999999999999985  68999999999999


Q ss_pred             EEEcCCCCceeEEEEec-CCCCCeeEEEecCCCCCcEEEEEecCCcEEEEEecCC--CCeeeeeecccCCCCeEEEEeCC
Q 022111           83 IWKEGNQNDWTQAHTFN-DHKSSVNSIAWAPHELGLSLACGSSDGNISVFTATAD--GGWDTTRIDQAHPVGVTSVSWAP  159 (302)
Q Consensus        83 iwd~~~~~~~~~~~~~~-~h~~~i~~l~~~pd~~~~~l~sg~~d~~v~~~~~~~~--~~~~~~~~~~~h~~~v~~~~~~~  159 (302)
                      +||..++.   ..+.+. +|...+.+++|.||  |..+++|+.|+++..||+...  +.|.-.+     ...|.+++..+
T Consensus       295 lwDv~tgd---~~~~y~~~~~~S~~sc~W~pD--g~~~V~Gs~dr~i~~wdlDgn~~~~W~gvr-----~~~v~dlait~  364 (519)
T KOG0293|consen  295 LWDVDTGD---LRHLYPSGLGFSVSSCAWCPD--GFRFVTGSPDRTIIMWDLDGNILGNWEGVR-----DPKVHDLAITY  364 (519)
T ss_pred             eccCCcch---hhhhcccCcCCCcceeEEccC--CceeEecCCCCcEEEecCCcchhhcccccc-----cceeEEEEEcC
Confidence            99997753   233332 24578999999999  778999999999999987521  1232111     12244444444


Q ss_pred             CCCC---------------------------CceeecccCCCceeEEEeeCCCcEEEEEEecCccccccccccccCCCc-
Q 022111          160 AMAP---------------------------GALVGLGLLDPVQKLASCGCDNTVKVWKMYNGIWKMDCFPALQMHSDW-  211 (302)
Q Consensus       160 ~~~~---------------------------~~~~~~~~~~~~~~l~s~~~D~~v~iwd~~~~~~~~~~~~~~~~h~~~-  211 (302)
                      ++..                           ..+..+..+.+++++++--.+..+++||+...    ..++.+.||+.. 
T Consensus       365 Dgk~vl~v~~d~~i~l~~~e~~~dr~lise~~~its~~iS~d~k~~LvnL~~qei~LWDl~e~----~lv~kY~Ghkq~~  440 (519)
T KOG0293|consen  365 DGKYVLLVTVDKKIRLYNREARVDRGLISEEQPITSFSISKDGKLALVNLQDQEIHLWDLEEN----KLVRKYFGHKQGH  440 (519)
T ss_pred             CCcEEEEEecccceeeechhhhhhhccccccCceeEEEEcCCCcEEEEEcccCeeEEeecchh----hHHHHhhcccccc
Confidence            3310                           01112223345777777888899999999865    345567777643 


Q ss_pred             -eeEEEeeCCCCCCccEEEEEecCCeEEEEEeccCCcceeeeeeccCCCcEEEEEEccC-CCEEEEecCC-ceEEeeecC
Q 022111          212 -VRSVAWAPNLGLPKSTIASASQDGTVVIWTCAKEGEQWEGRVLKDFKTPVWSVSWSLT-GNLLAVADAN-NVTLWKEAV  288 (302)
Q Consensus       212 -v~~v~~~p~~~~~~~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~spd-g~~la~~~~d-~i~~w~~~~  288 (302)
                       |-.-+|.   +.+..+++|||+|+.|+||+..+.+.   ...+.+|...|..|+|+|. -.++|+|++| +|+||....
T Consensus       441 fiIrSCFg---g~~~~fiaSGSED~kvyIWhr~sgkl---l~~LsGHs~~vNcVswNP~~p~m~ASasDDgtIRIWg~~~  514 (519)
T KOG0293|consen  441 FIIRSCFG---GGNDKFIASGSEDSKVYIWHRISGKL---LAVLSGHSKTVNCVSWNPADPEMFASASDDGTIRIWGPSD  514 (519)
T ss_pred             eEEEeccC---CCCcceEEecCCCceEEEEEccCCce---eEeecCCcceeeEEecCCCCHHHhhccCCCCeEEEecCCc
Confidence             3333453   23358999999999999999876532   3456899999999999995 4889999999 799998754


Q ss_pred             C
Q 022111          289 D  289 (302)
Q Consensus       289 ~  289 (302)
                      +
T Consensus       515 ~  515 (519)
T KOG0293|consen  515 N  515 (519)
T ss_pred             c
Confidence            3

>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.98  E-value=8.1e-32  Score=222.55  Aligned_cols=248  Identities=21%  Similarity=0.295  Sum_probs=193.5

Q ss_pred             ccccccceeEEEEccCC-CEEEEeeCCCcEEEEeecCCCceEEEEecCcccCeEEEEeeCCCCCCEEEEEeCCCeEEEEE
Q 022111            7 ETGHEDTVHDVAMDFYG-KRLATASSDSSIKIIGLSNSASQHLATLKGHRGPVWQVAWAHPKFGSILASCSYDGQVIIWK   85 (302)
Q Consensus         7 ~~~h~~~v~~~~~s~~~-~~l~s~~~d~~v~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~s~D~~i~iwd   85 (302)
                      +.||.+.|.+++-+|.. ..+|||+.||.|+|||++.  ..++.++.+|.+.|..|++..    .-+++++.|++|+.|.
T Consensus        62 L~gHrdGV~~lakhp~~ls~~aSGs~DG~VkiWnlsq--R~~~~~f~AH~G~V~Gi~v~~----~~~~tvgdDKtvK~wk  135 (433)
T KOG0268|consen   62 LDGHRDGVSCLAKHPNKLSTVASGSCDGEVKIWNLSQ--RECIRTFKAHEGLVRGICVTQ----TSFFTVGDDKTVKQWK  135 (433)
T ss_pred             ccccccccchhhcCcchhhhhhccccCceEEEEehhh--hhhhheeecccCceeeEEecc----cceEEecCCcceeeee
Confidence            46999999999999876 7899999999999999965  456788999999999999853    4678999999999997


Q ss_pred             cCCCC-----------------------------------ceeEEEEecCCCCCeeEEEecCCCCCcEEEEEecCCcEEE
Q 022111           86 EGNQN-----------------------------------DWTQAHTFNDHKSSVNSIAWAPHELGLSLACGSSDGNISV  130 (302)
Q Consensus        86 ~~~~~-----------------------------------~~~~~~~~~~h~~~i~~l~~~pd~~~~~l~sg~~d~~v~~  130 (302)
                      +....                                   ...++..+.-..+.|.++.|+|-+ ..+|++|+.|+.|.|
T Consensus       136 ~~~~p~~tilg~s~~~gIdh~~~~~~FaTcGe~i~IWD~~R~~Pv~smswG~Dti~svkfNpvE-TsILas~~sDrsIvL  214 (433)
T KOG0268|consen  136 IDGPPLHTILGKSVYLGIDHHRKNSVFATCGEQIDIWDEQRDNPVSSMSWGADSISSVKFNPVE-TSILASCASDRSIVL  214 (433)
T ss_pred             ccCCcceeeeccccccccccccccccccccCceeeecccccCCccceeecCCCceeEEecCCCc-chheeeeccCCceEE
Confidence            42110                                   011333444455778888899875 357999999999999


Q ss_pred             EEecCCCCeeeeeecccCCCCeEEEEeCCCCCCCceeecccCCCceeEEEeeCCCcEEEEEEecCccccccccccccCCC
Q 022111          131 FTATADGGWDTTRIDQAHPVGVTSVSWAPAMAPGALVGLGLLDPVQKLASCGCDNTVKVWKMYNGIWKMDCFPALQMHSD  210 (302)
Q Consensus       131 ~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~D~~v~iwd~~~~~~~~~~~~~~~~h~~  210 (302)
                      ||++...+.....+    ....+.++|+|..              -.|+++.+|..++.||++.-.   ..+..+.+|.+
T Consensus       215 yD~R~~~Pl~KVi~----~mRTN~IswnPea--------------fnF~~a~ED~nlY~~DmR~l~---~p~~v~~dhvs  273 (433)
T KOG0268|consen  215 YDLRQASPLKKVIL----TMRTNTICWNPEA--------------FNFVAANEDHNLYTYDMRNLS---RPLNVHKDHVS  273 (433)
T ss_pred             EecccCCccceeee----eccccceecCccc--------------cceeeccccccceehhhhhhc---ccchhhcccce
Confidence            99997654432222    3446789999943              578999999999999998643   34556788999


Q ss_pred             ceeEEEeeCCCCCCccEEEEEecCCeEEEEEeccCCcceeeeeeccCCCcEEEEEEccCCCEEEEecCC-ceEEeeecC
Q 022111          211 WVRSVAWAPNLGLPKSTIASASQDGTVVIWTCAKEGEQWEGRVLKDFKTPVWSVSWSLTGNLLAVADAN-NVTLWKEAV  288 (302)
Q Consensus       211 ~v~~v~~~p~~~~~~~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~la~~~~d-~i~~w~~~~  288 (302)
                      .|.+|+|||.|    +-|+|||.|++||||..+.....  ......-...|.++.||.|.+++.+|++| +|++|+...
T Consensus       274 AV~dVdfsptG----~EfvsgsyDksIRIf~~~~~~SR--diYhtkRMq~V~~Vk~S~Dskyi~SGSdd~nvRlWka~A  346 (433)
T KOG0268|consen  274 AVMDVDFSPTG----QEFVSGSYDKSIRIFPVNHGHSR--DIYHTKRMQHVFCVKYSMDSKYIISGSDDGNVRLWKAKA  346 (433)
T ss_pred             eEEEeccCCCc----chhccccccceEEEeecCCCcch--hhhhHhhhheeeEEEEeccccEEEecCCCcceeeeecch
Confidence            99999999996    77999999999999998753210  01112223569999999999999999999 899999764

>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto

Probab=99.98  E-value=4.4e-29  Score=211.30  Aligned_cols=249  Identities=33%  Similarity=0.488  Sum_probs=199.4

Q ss_pred             ccccccccceeEEEEccCCCEEEEeeCCCcEEEEeecCCCceEEEEecCcccCeEEEEeeCCCCCCEEEEEeCCCeEEEE
Q 022111            5 KIETGHEDTVHDVAMDFYGKRLATASSDSSIKIIGLSNSASQHLATLKGHRGPVWQVAWAHPKFGSILASCSYDGQVIIW   84 (302)
Q Consensus         5 ~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~s~D~~i~iw   84 (302)
                      +++.+|+++|++++|++++++|++++.|+.+++|++....  ....+.+|...+..+.|.++  +++|++++.|+.+++|
T Consensus         3 ~~~~~h~~~i~~~~~~~~~~~l~~~~~~g~i~i~~~~~~~--~~~~~~~~~~~i~~~~~~~~--~~~l~~~~~~~~i~i~   78 (289)
T cd00200           3 RTLKGHTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGE--LLRTLKGHTGPVRDVAASAD--GTYLASGSSDKTIRLW   78 (289)
T ss_pred             hHhcccCCCEEEEEEcCCCCEEEEeecCcEEEEEEeeCCC--cEEEEecCCcceeEEEECCC--CCEEEEEcCCCeEEEE
Confidence            3466999999999999999999999999999999987533  45567789999999999764  6799999999999999


Q ss_pred             EcCCCCceeEEEEecCCCCCeeEEEecCCCCCcEEEEEecCCcEEEEEecCCCCeeeeeecccCCCCeEEEEeCCCCCCC
Q 022111           85 KEGNQNDWTQAHTFNDHKSSVNSIAWAPHELGLSLACGSSDGNISVFTATADGGWDTTRIDQAHPVGVTSVSWAPAMAPG  164 (302)
Q Consensus        85 d~~~~~~~~~~~~~~~h~~~i~~l~~~pd~~~~~l~sg~~d~~v~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~  164 (302)
                      ++....   ....+..|...|.++.|+|+  +.++++++.++.+.+|++....  ....+. .|...+.++.|+|+.   
T Consensus        79 ~~~~~~---~~~~~~~~~~~i~~~~~~~~--~~~~~~~~~~~~i~~~~~~~~~--~~~~~~-~~~~~i~~~~~~~~~---  147 (289)
T cd00200          79 DLETGE---CVRTLTGHTSYVSSVAFSPD--GRILSSSSRDKTIKVWDVETGK--CLTTLR-GHTDWVNSVAFSPDG---  147 (289)
T ss_pred             EcCccc---ceEEEeccCCcEEEEEEcCC--CCEEEEecCCCeEEEEECCCcE--EEEEec-cCCCcEEEEEEcCcC---
Confidence            997642   45566788889999999997  5678888889999999987432  222332 677889999998852   


Q ss_pred             ceeecccCCCceeEEEeeCCCcEEEEEEecCccccccccccccCCCceeEEEeeCCCCCCccEEEEEecCCeEEEEEecc
Q 022111          165 ALVGLGLLDPVQKLASCGCDNTVKVWKMYNGIWKMDCFPALQMHSDWVRSVAWAPNLGLPKSTIASASQDGTVVIWTCAK  244 (302)
Q Consensus       165 ~~~~~~~~~~~~~l~s~~~D~~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~l~s~s~D~~i~iwd~~~  244 (302)
                                 .++++++.|+.|++||++++    .....+..|...|.+++|+|++    +.+++++.|+.|++||++.
T Consensus       148 -----------~~l~~~~~~~~i~i~d~~~~----~~~~~~~~~~~~i~~~~~~~~~----~~l~~~~~~~~i~i~d~~~  208 (289)
T cd00200         148 -----------TFVASSSQDGTIKLWDLRTG----KCVATLTGHTGEVNSVAFSPDG----EKLLSSSSDGTIKLWDLST  208 (289)
T ss_pred             -----------CEEEEEcCCCcEEEEEcccc----ccceeEecCccccceEEECCCc----CEEEEecCCCcEEEEECCC
Confidence                       57777777999999999765    3345566888899999999985    6788888899999999975


Q ss_pred             CCcceeeeeeccCCCcEEEEEEccCCCEEEEecCC-ceEEeeecCCc
Q 022111          245 EGEQWEGRVLKDFKTPVWSVSWSLTGNLLAVADAN-NVTLWKEAVDG  290 (302)
Q Consensus       245 ~~~~~~~~~~~~~~~~v~~~~~spdg~~la~~~~d-~i~~w~~~~~~  290 (302)
                      ...   ......+..++.+++|+|++.++++++.+ .+++|+.....
T Consensus       209 ~~~---~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~  252 (289)
T cd00200         209 GKC---LGTLRGHENGVNSVAFSPDGYLLASGSEDGTIRVWDLRTGE  252 (289)
T ss_pred             Cce---ecchhhcCCceEEEEEcCCCcEEEEEcCCCcEEEEEcCCce
Confidence            321   12223566789999999999999888855 79999986433

>KOG0283 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.98  E-value=1.1e-30  Score=236.19  Aligned_cols=245  Identities=19%  Similarity=0.348  Sum_probs=189.3

Q ss_pred             ccccceeEEEEccCCCEEEEeeCCCcEEEEeecC--------------------------------CC------------
Q 022111            9 GHEDTVHDVAMDFYGKRLATASSDSSIKIIGLSN--------------------------------SA------------   44 (302)
Q Consensus         9 ~h~~~v~~~~~s~~~~~l~s~~~d~~v~lw~~~~--------------------------------~~------------   44 (302)
                      +|+++|.++.||+||+|||+||.|+.||||.+.+                                ..            
T Consensus       265 ah~gaIw~mKFS~DGKyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~s~~~~~~~  344 (712)
T KOG0283|consen  265 AHKGAIWAMKFSHDGKYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRTSSSRKGSQ  344 (712)
T ss_pred             ccCCcEEEEEeCCCCceeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCccccccccccccccccccccC
Confidence            8999999999999999999999999999998754                                00            


Q ss_pred             --------------ceEEEEecCcccCeEEEEeeCCCCCCEEEEEeCCCeEEEEEcCCCCceeEEEEecCCCCCeeEEEe
Q 022111           45 --------------SQHLATLKGHRGPVWQVAWAHPKFGSILASCSYDGQVIIWKEGNQNDWTQAHTFNDHKSSVNSIAW  110 (302)
Q Consensus        45 --------------~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~h~~~i~~l~~  110 (302)
                                    .+++..+.||.+.|..|.|+.   ..+|.|+|+|+|+|||.+...   .++..|. |++.|+|++|
T Consensus       345 s~~~~~p~~~f~f~ekP~~ef~GHt~DILDlSWSK---n~fLLSSSMDKTVRLWh~~~~---~CL~~F~-HndfVTcVaF  417 (712)
T KOG0283|consen  345 SPCVLLPLKAFVFSEKPFCEFKGHTADILDLSWSK---NNFLLSSSMDKTVRLWHPGRK---ECLKVFS-HNDFVTCVAF  417 (712)
T ss_pred             CccccCCCccccccccchhhhhccchhheeccccc---CCeeEeccccccEEeecCCCc---ceeeEEe-cCCeeEEEEe
Confidence                          023456789999999999984   578999999999999998654   4777886 9999999999


Q ss_pred             cCCCCCcEEEEEecCCcEEEEEecCCCCeeeeeecccCCCCeEEEEeCCCCCCCceeecccCCCceeEEEeeCCCcEEEE
Q 022111          111 APHELGLSLACGSSDGNISVFTATADGGWDTTRIDQAHPVGVTSVSWAPAMAPGALVGLGLLDPVQKLASCGCDNTVKVW  190 (302)
Q Consensus       111 ~pd~~~~~l~sg~~d~~v~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~D~~v~iw  190 (302)
                      +|-+ ..++++|+.|+.|+||.+....   ..... .-..-|++++|.|+              |+..+.|+.+|..++|
T Consensus       418 nPvD-DryFiSGSLD~KvRiWsI~d~~---Vv~W~-Dl~~lITAvcy~Pd--------------Gk~avIGt~~G~C~fY  478 (712)
T KOG0283|consen  418 NPVD-DRYFISGSLDGKVRLWSISDKK---VVDWN-DLRDLITAVCYSPD--------------GKGAVIGTFNGYCRFY  478 (712)
T ss_pred             cccC-CCcEeecccccceEEeecCcCe---eEeeh-hhhhhheeEEeccC--------------CceEEEEEeccEEEEE
Confidence            9975 4689999999999999986432   12221 12356899999997              4788999999999999


Q ss_pred             EEecCcccccccccc-----ccCCCceeEEEeeCCCCCCccEEEEEecCCeEEEEEeccCCcceeeeeeccCC--CcEEE
Q 022111          191 KMYNGIWKMDCFPAL-----QMHSDWVRSVAWAPNLGLPKSTIASASQDGTVVIWTCAKEGEQWEGRVLKDFK--TPVWS  263 (302)
Q Consensus       191 d~~~~~~~~~~~~~~-----~~h~~~v~~v~~~p~~~~~~~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~~~--~~v~~  263 (302)
                      +....+........+     ..|. .|+.+.|.|..   ...|+..+.|..|||+|.++....   ..++++.  ..-..
T Consensus       479 ~t~~lk~~~~~~I~~~~~Kk~~~~-rITG~Q~~p~~---~~~vLVTSnDSrIRI~d~~~~~lv---~KfKG~~n~~SQ~~  551 (712)
T KOG0283|consen  479 DTEGLKLVSDFHIRLHNKKKKQGK-RITGLQFFPGD---PDEVLVTSNDSRIRIYDGRDKDLV---HKFKGFRNTSSQIS  551 (712)
T ss_pred             EccCCeEEEeeeEeeccCccccCc-eeeeeEecCCC---CCeEEEecCCCceEEEeccchhhh---hhhcccccCCccee
Confidence            987654322211111     1234 79999999863   456888899999999999653211   1123332  22446


Q ss_pred             EEEccCCCEEEEecCC-ceEEeee
Q 022111          264 VSWSLTGNLLAVADAN-NVTLWKE  286 (302)
Q Consensus       264 ~~~spdg~~la~~~~d-~i~~w~~  286 (302)
                      .+|+.||++|++|+.| .|++|+.
T Consensus       552 Asfs~Dgk~IVs~seDs~VYiW~~  575 (712)
T KOG0283|consen  552 ASFSSDGKHIVSASEDSWVYIWKN  575 (712)
T ss_pred             eeEccCCCEEEEeecCceEEEEeC
Confidence            7899999999999998 7999996

>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.98  E-value=1.2e-30  Score=236.42  Aligned_cols=249  Identities=18%  Similarity=0.280  Sum_probs=209.6

Q ss_pred             ccccceeEEEEccCCCEEEEeeCCCcEEEEeecCCCceEEEEecCcccCeEEEEeeCCCCCCEEEEEeCCCeEEEEEcCC
Q 022111            9 GHEDTVHDVAMDFYGKRLATASSDSSIKIIGLSNSASQHLATLKGHRGPVWQVAWAHPKFGSILASCSYDGQVIIWKEGN   88 (302)
Q Consensus         9 ~h~~~v~~~~~s~~~~~l~s~~~d~~v~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~s~D~~i~iwd~~~   88 (302)
                      .-+..|.+++|+|..-+++++=..|.|++||..-  +..+..|.+|.++|+.|.|.|.  ..+++||+.|.+|++|+...
T Consensus         7 skSsRvKglsFHP~rPwILtslHsG~IQlWDYRM--~tli~rFdeHdGpVRgv~FH~~--qplFVSGGDDykIkVWnYk~   82 (1202)
T KOG0292|consen    7 SKSSRVKGLSFHPKRPWILTSLHSGVIQLWDYRM--GTLIDRFDEHDGPVRGVDFHPT--QPLFVSGGDDYKIKVWNYKT   82 (1202)
T ss_pred             cccccccceecCCCCCEEEEeecCceeeeehhhh--hhHHhhhhccCCccceeeecCC--CCeEEecCCccEEEEEeccc
Confidence            3456788999999999999999999999999865  3457788999999999999654  67999999999999999876


Q ss_pred             CCceeEEEEecCCCCCeeEEEecCCCCCcEEEEEecCCcEEEEEecCCCCeeeeeecccCCCCeEEEEeCCCCCCCceee
Q 022111           89 QNDWTQAHTFNDHKSSVNSIAWAPHELGLSLACGSSDGNISVFTATADGGWDTTRIDQAHPVGVTSVSWAPAMAPGALVG  168 (302)
Q Consensus        89 ~~~~~~~~~~~~h~~~i~~l~~~pd~~~~~l~sg~~d~~v~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~  168 (302)
                      .   .++.++.+|.+.|+.+.|++.-  -+++++|+|.+|+||...+.....  .+. +|..-|-|..|.|..       
T Consensus        83 r---rclftL~GHlDYVRt~~FHhey--PWIlSASDDQTIrIWNwqsr~~ia--vlt-GHnHYVMcAqFhptE-------  147 (1202)
T KOG0292|consen   83 R---RCLFTLLGHLDYVRTVFFHHEY--PWILSASDDQTIRIWNWQSRKCIA--VLT-GHNHYVMCAQFHPTE-------  147 (1202)
T ss_pred             c---eehhhhccccceeEEeeccCCC--ceEEEccCCCeEEEEeccCCceEE--EEe-cCceEEEeeccCCcc-------
Confidence            5   5888999999999999999874  489999999999999987654433  333 888889999999864       


Q ss_pred             cccCCCceeEEEeeCCCcEEEEEEecCccc--------------------c---c--cccccccCCCceeEEEeeCCCCC
Q 022111          169 LGLLDPVQKLASCGCDNTVKVWKMYNGIWK--------------------M---D--CFPALQMHSDWVRSVAWAPNLGL  223 (302)
Q Consensus       169 ~~~~~~~~~l~s~~~D~~v~iwd~~~~~~~--------------------~---~--~~~~~~~h~~~v~~v~~~p~~~~  223 (302)
                             .+++|+|-|.+|||||+..-..+                    +   +  ..+.+.||.-.|+-++|+|..  
T Consensus       148 -------DlIVSaSLDQTVRVWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHDRGVNwaAfhpTl--  218 (1202)
T KOG0292|consen  148 -------DLIVSASLDQTVRVWDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHDRGVNWAAFHPTL--  218 (1202)
T ss_pred             -------ceEEEecccceEEEEeecchhccCCCCCCchhhhhccccchhhcCCcCeeeeeeecccccccceEEecCCc--
Confidence                   78999999999999998431100                    0   1  123568999999999999986  


Q ss_pred             CccEEEEEecCCeEEEEEeccCCcceeeeeeccCCCcEEEEEEccCCCEEEEecCC-ceEEeeecC
Q 022111          224 PKSTIASASQDGTVVIWTCAKEGEQWEGRVLKDFKTPVWSVSWSLTGNLLAVADAN-NVTLWKEAV  288 (302)
Q Consensus       224 ~~~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~la~~~~d-~i~~w~~~~  288 (302)
                        ..|+||++|+-|++|.+...+ .|......+|...|.++-|+|..++|++.+.| +|++||+..
T Consensus       219 --pliVSG~DDRqVKlWrmnetK-aWEvDtcrgH~nnVssvlfhp~q~lIlSnsEDksirVwDm~k  281 (1202)
T KOG0292|consen  219 --PLIVSGADDRQVKLWRMNETK-AWEVDTCRGHYNNVSSVLFHPHQDLILSNSEDKSIRVWDMTK  281 (1202)
T ss_pred             --ceEEecCCcceeeEEEecccc-ceeehhhhcccCCcceEEecCccceeEecCCCccEEEEeccc
Confidence              679999999999999987654 48777788999999999999999999999999 799999854

>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.98  E-value=3.4e-30  Score=220.09  Aligned_cols=245  Identities=21%  Similarity=0.286  Sum_probs=198.1

Q ss_pred             ccccccccceeEEEEccCCCEEEEeeCCCcEEEEeecCCCceEEEEecCcccCeEEEEeeCCCCCCEEEEEeCCCeEEEE
Q 022111            5 KIETGHEDTVHDVAMDFYGKRLATASSDSSIKIIGLSNSASQHLATLKGHRGPVWQVAWAHPKFGSILASCSYDGQVIIW   84 (302)
Q Consensus         5 ~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~s~D~~i~iw   84 (302)
                      +++...++.|++++|..||+.||+|...|.|+|+|..+  ...+..+.+|+.+|..+.|++ .+++.+++|+.|+.+++|
T Consensus        62 k~~srFk~~v~s~~fR~DG~LlaaGD~sG~V~vfD~k~--r~iLR~~~ah~apv~~~~f~~-~d~t~l~s~sDd~v~k~~  138 (487)
T KOG0310|consen   62 KTFSRFKDVVYSVDFRSDGRLLAAGDESGHVKVFDMKS--RVILRQLYAHQAPVHVTKFSP-QDNTMLVSGSDDKVVKYW  138 (487)
T ss_pred             hhHHhhccceeEEEeecCCeEEEccCCcCcEEEecccc--HHHHHHHhhccCceeEEEecc-cCCeEEEecCCCceEEEE
Confidence            44566788999999999999999999999999999533  335677899999999999976 468899999999999999


Q ss_pred             EcCCCCceeEEEEecCCCCCeeEEEecCCCCCcEEEEEecCCcEEEEEecCCCCeeeeeecccCCCCeEEEEeCCCCCCC
Q 022111           85 KEGNQNDWTQAHTFNDHKSSVNSIAWAPHELGLSLACGSSDGNISVFTATADGGWDTTRIDQAHPVGVTSVSWAPAMAPG  164 (302)
Q Consensus        85 d~~~~~~~~~~~~~~~h~~~i~~l~~~pd~~~~~l~sg~~d~~v~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~  164 (302)
                      |+.+..   ....+.+|++.|+|.+|+|-. ..+++||+.|+.|++||.+....+ ...+  .|..+|.++.+-|.    
T Consensus       139 d~s~a~---v~~~l~~htDYVR~g~~~~~~-~hivvtGsYDg~vrl~DtR~~~~~-v~el--nhg~pVe~vl~lps----  207 (487)
T KOG0310|consen  139 DLSTAY---VQAELSGHTDYVRCGDISPAN-DHIVVTGSYDGKVRLWDTRSLTSR-VVEL--NHGCPVESVLALPS----  207 (487)
T ss_pred             EcCCcE---EEEEecCCcceeEeeccccCC-CeEEEecCCCceEEEEEeccCCce-eEEe--cCCCceeeEEEcCC----
Confidence            997753   244788999999999999863 458999999999999999865432 2333  57788999888775    


Q ss_pred             ceeecccCCCceeEEEeeCCCcEEEEEEecCccccccccccccCCCceeEEEeeCCCCCCccEEEEEecCCeEEEEEecc
Q 022111          165 ALVGLGLLDPVQKLASCGCDNTVKVWKMYNGIWKMDCFPALQMHSDWVRSVAWAPNLGLPKSTIASASQDGTVVIWTCAK  244 (302)
Q Consensus       165 ~~~~~~~~~~~~~l~s~~~D~~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~l~s~s~D~~i~iwd~~~  244 (302)
                                |.++||+|. +.|+|||+.++...   +.....|...|+|+++..++    ..|+|||-|+.+++||...
T Consensus       208 ----------gs~iasAgG-n~vkVWDl~~G~ql---l~~~~~H~KtVTcL~l~s~~----~rLlS~sLD~~VKVfd~t~  269 (487)
T KOG0310|consen  208 ----------GSLIASAGG-NSVKVWDLTTGGQL---LTSMFNHNKTVTCLRLASDS----TRLLSGSLDRHVKVFDTTN  269 (487)
T ss_pred             ----------CCEEEEcCC-CeEEEEEecCCcee---hhhhhcccceEEEEEeecCC----ceEeecccccceEEEEccc
Confidence                      367888874 67999999866422   23344599999999998774    7899999999999999643


Q ss_pred             CCcceeeeeeccCCCcEEEEEEccCCCEEEEecCCceEEee
Q 022111          245 EGEQWEGRVLKDFKTPVWSVSWSLTGNLLAVADANNVTLWK  285 (302)
Q Consensus       245 ~~~~~~~~~~~~~~~~v~~~~~spdg~~la~~~~d~i~~w~  285 (302)
                          +.......+.++|.+++.+||++-+++|-+|++....
T Consensus       270 ----~Kvv~s~~~~~pvLsiavs~dd~t~viGmsnGlv~~r  306 (487)
T KOG0310|consen  270 ----YKVVHSWKYPGPVLSIAVSPDDQTVVIGMSNGLVSIR  306 (487)
T ss_pred             ----eEEEEeeecccceeeEEecCCCceEEEecccceeeee
Confidence                3334446788999999999999999999888655544

>PLN00181 protein SPA1-RELATED; Provisional

Probab=99.97  E-value=2.2e-29  Score=243.91  Aligned_cols=248  Identities=21%  Similarity=0.314  Sum_probs=193.5

Q ss_pred             cccceeEEEEccC-CCEEEEeeCCCcEEEEeecCCCceEEEEecCcccCeEEEEeeCCCCCCEEEEEeCCCeEEEEEcCC
Q 022111           10 HEDTVHDVAMDFY-GKRLATASSDSSIKIIGLSNSASQHLATLKGHRGPVWQVAWAHPKFGSILASCSYDGQVIIWKEGN   88 (302)
Q Consensus        10 h~~~v~~~~~s~~-~~~l~s~~~d~~v~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~s~D~~i~iwd~~~   88 (302)
                      +...|.+++|++. +.+||+++.|++|+|||+.+  .+.+..+.+|.+.|++++|++. ++.+|+||+.|++|++||++.
T Consensus       531 ~~~~v~~l~~~~~~~~~las~~~Dg~v~lWd~~~--~~~~~~~~~H~~~V~~l~~~p~-~~~~L~Sgs~Dg~v~iWd~~~  607 (793)
T PLN00181        531 SRSKLSGICWNSYIKSQVASSNFEGVVQVWDVAR--SQLVTEMKEHEKRVWSIDYSSA-DPTLLASGSDDGSVKLWSINQ  607 (793)
T ss_pred             ccCceeeEEeccCCCCEEEEEeCCCeEEEEECCC--CeEEEEecCCCCCEEEEEEcCC-CCCEEEEEcCCCEEEEEECCC
Confidence            3457889999864 78999999999999999865  3566788899999999999753 478999999999999999976


Q ss_pred             CCceeEEEEecCCCCCeeEEEecCCCCCcEEEEEecCCcEEEEEecCCCCeeeeeecccCCCCeEEEEeCCCCCCCceee
Q 022111           89 QNDWTQAHTFNDHKSSVNSIAWAPHELGLSLACGSSDGNISVFTATADGGWDTTRIDQAHPVGVTSVSWAPAMAPGALVG  168 (302)
Q Consensus        89 ~~~~~~~~~~~~h~~~i~~l~~~pd~~~~~l~sg~~d~~v~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~  168 (302)
                      ..   ....+.. ...|.++.|+++ .+..+++|+.|+.|++||++.... ....+ .+|...|.++.|.+         
T Consensus       608 ~~---~~~~~~~-~~~v~~v~~~~~-~g~~latgs~dg~I~iwD~~~~~~-~~~~~-~~h~~~V~~v~f~~---------  671 (793)
T PLN00181        608 GV---SIGTIKT-KANICCVQFPSE-SGRSLAFGSADHKVYYYDLRNPKL-PLCTM-IGHSKTVSYVRFVD---------  671 (793)
T ss_pred             Cc---EEEEEec-CCCeEEEEEeCC-CCCEEEEEeCCCeEEEEECCCCCc-cceEe-cCCCCCEEEEEEeC---------
Confidence            53   4455553 467999999654 267999999999999999875421 12223 37888999999963         


Q ss_pred             cccCCCceeEEEeeCCCcEEEEEEecCcc--ccccccccccCCCceeEEEeeCCCCCCccEEEEEecCCeEEEEEeccCC
Q 022111          169 LGLLDPVQKLASCGCDNTVKVWKMYNGIW--KMDCFPALQMHSDWVRSVAWAPNLGLPKSTIASASQDGTVVIWTCAKEG  246 (302)
Q Consensus       169 ~~~~~~~~~l~s~~~D~~v~iwd~~~~~~--~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~l~s~s~D~~i~iwd~~~~~  246 (302)
                            +..|++++.|++|+|||++.+..  ....+..+.+|...+++++|+|++    .+|++|+.|+.|++|+.....
T Consensus       672 ------~~~lvs~s~D~~ikiWd~~~~~~~~~~~~l~~~~gh~~~i~~v~~s~~~----~~lasgs~D~~v~iw~~~~~~  741 (793)
T PLN00181        672 ------SSTLVSSSTDNTLKLWDLSMSISGINETPLHSFMGHTNVKNFVGLSVSD----GYIATGSETNEVFVYHKAFPM  741 (793)
T ss_pred             ------CCEEEEEECCCEEEEEeCCCCccccCCcceEEEcCCCCCeeEEEEcCCC----CEEEEEeCCCEEEEEECCCCC
Confidence                  36799999999999999975321  113456788999999999999985    789999999999999975432


Q ss_pred             ccee----------eeeeccCCCcEEEEEEccCCCEEEEecCC-ceEEeee
Q 022111          247 EQWE----------GRVLKDFKTPVWSVSWSLTGNLLAVADAN-NVTLWKE  286 (302)
Q Consensus       247 ~~~~----------~~~~~~~~~~v~~~~~spdg~~la~~~~d-~i~~w~~  286 (302)
                      ..+.          ......+...|.+++|+|++.+|++|+.+ .|++|++
T Consensus       742 ~~~s~~~~~~~~~~~~~~~~~~~~V~~v~ws~~~~~lva~~~dG~I~i~~~  792 (793)
T PLN00181        742 PVLSYKFKTIDPVSGLEVDDASQFISSVCWRGQSSTLVAANSTGNIKILEM  792 (793)
T ss_pred             ceEEEecccCCcccccccCCCCcEEEEEEEcCCCCeEEEecCCCcEEEEec
Confidence            1110          00112344569999999999999999988 7999985

>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.97  E-value=4.1e-30  Score=225.37  Aligned_cols=252  Identities=19%  Similarity=0.240  Sum_probs=213.9

Q ss_pred             cccccccccceeEEEEccCCCEEEEeeCCCcEEEEeecCCCceEEEEecCcccCeEEEEeeCCCCCCEEEEEeCCCeEEE
Q 022111            4 QKIETGHEDTVHDVAMDFYGKRLATASSDSSIKIIGLSNSASQHLATLKGHRGPVWQVAWAHPKFGSILASCSYDGQVII   83 (302)
Q Consensus         4 ~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~s~D~~i~i   83 (302)
                      ++.+..|++.|.++.|+|...+++++=..|.|.||+.++.  ..+.++.--.-+|++..|.+.  -+.+++|+.|..||+
T Consensus         6 krk~~~rSdRVKsVd~HPtePw~la~LynG~V~IWnyetq--tmVksfeV~~~PvRa~kfiaR--knWiv~GsDD~~IrV   81 (794)
T KOG0276|consen    6 KRKFQSRSDRVKSVDFHPTEPWILAALYNGDVQIWNYETQ--TMVKSFEVSEVPVRAAKFIAR--KNWIVTGSDDMQIRV   81 (794)
T ss_pred             hhHhhccCCceeeeecCCCCceEEEeeecCeeEEEecccc--eeeeeeeecccchhhheeeec--cceEEEecCCceEEE
Confidence            4456679999999999999999999999999999998753  345666556678998888764  379999999999999


Q ss_pred             EEcCCCCceeEEEEecCCCCCeeEEEecCCCCCcEEEEEecCCcEEEEEecCCCCeeeeeecccCCCCeEEEEeCCCCCC
Q 022111           84 WKEGNQNDWTQAHTFNDHKSSVNSIAWAPHELGLSLACGSSDGNISVFTATADGGWDTTRIDQAHPVGVTSVSWAPAMAP  163 (302)
Q Consensus        84 wd~~~~~~~~~~~~~~~h~~~i~~l~~~pd~~~~~l~sg~~d~~v~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~  163 (302)
                      |+.++.   ..+++|..|.+.|++++.+|..+  +++++|+|-+|++|+...  .|...+.-.+|+.-|-+++|+|..  
T Consensus        82 fnynt~---ekV~~FeAH~DyIR~iavHPt~P--~vLtsSDDm~iKlW~we~--~wa~~qtfeGH~HyVMqv~fnPkD--  152 (794)
T KOG0276|consen   82 FNYNTG---EKVKTFEAHSDYIRSIAVHPTLP--YVLTSSDDMTIKLWDWEN--EWACEQTFEGHEHYVMQVAFNPKD--  152 (794)
T ss_pred             Eecccc---eeeEEeeccccceeeeeecCCCC--eEEecCCccEEEEeeccC--ceeeeeEEcCcceEEEEEEecCCC--
Confidence            998775   57889999999999999999865  899999999999999864  466655445899999999999963  


Q ss_pred             CceeecccCCCceeEEEeeCCCcEEEEEEecCccccccccccccCCCceeEEEeeCCCCCCccEEEEEecCCeEEEEEec
Q 022111          164 GALVGLGLLDPVQKLASCGCDNTVKVWKMYNGIWKMDCFPALQMHSDWVRSVAWAPNLGLPKSTIASASQDGTVVIWTCA  243 (302)
Q Consensus       164 ~~~~~~~~~~~~~~l~s~~~D~~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~l~s~s~D~~i~iwd~~  243 (302)
                                 ...+|||+-|++|+||.+-+.    .+..++.||...|+||+|-|-+  +.-+|+||++|.+++|||.+
T Consensus       153 -----------~ntFaS~sLDrTVKVWslgs~----~~nfTl~gHekGVN~Vdyy~~g--dkpylIsgaDD~tiKvWDyQ  215 (794)
T KOG0276|consen  153 -----------PNTFASASLDRTVKVWSLGSP----HPNFTLEGHEKGVNCVDYYTGG--DKPYLISGADDLTIKVWDYQ  215 (794)
T ss_pred             -----------ccceeeeeccccEEEEEcCCC----CCceeeeccccCcceEEeccCC--CcceEEecCCCceEEEeecc
Confidence                       367999999999999999776    4566889999999999998754  34689999999999999987


Q ss_pred             cCCcceeeeeeccCCCcEEEEEEccCCCEEEEecCC-ceEEeeecC
Q 022111          244 KEGEQWEGRVLKDFKTPVWSVSWSLTGNLLAVADAN-NVTLWKEAV  288 (302)
Q Consensus       244 ~~~~~~~~~~~~~~~~~v~~~~~spdg~~la~~~~d-~i~~w~~~~  288 (302)
                      +.   .....+.+|...|..+.|+|.=.++++|+.| +++||....
T Consensus       216 tk---~CV~TLeGHt~Nvs~v~fhp~lpiiisgsEDGTvriWhs~T  258 (794)
T KOG0276|consen  216 TK---SCVQTLEGHTNNVSFVFFHPELPIIISGSEDGTVRIWNSKT  258 (794)
T ss_pred             hH---HHHHHhhcccccceEEEecCCCcEEEEecCCccEEEecCcc
Confidence            53   2235668899999999999999999999999 799998654

>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]

Probab=99.97  E-value=4.2e-29  Score=199.08  Aligned_cols=249  Identities=20%  Similarity=0.272  Sum_probs=194.6

Q ss_pred             ccccccccceeEEEEccCCCEEEEeeCCCcEEEEeecCCCceEEEEecCcccCeEEEEeeCCCCCCEEEEEeCCCeEEEE
Q 022111            5 KIETGHEDTVHDVAMDFYGKRLATASSDSSIKIIGLSNSASQHLATLKGHRGPVWQVAWAHPKFGSILASCSYDGQVIIW   84 (302)
Q Consensus         5 ~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~s~D~~i~iw   84 (302)
                      ..++||+.+++.+.++.+|.+|.||+.|.++.+|--.+  ++.+.+..||.+.|+++....  +.++|+||++|.+++||
T Consensus         4 i~l~GHERplTqiKyN~eGDLlFscaKD~~~~vw~s~n--GerlGty~GHtGavW~~Did~--~s~~liTGSAD~t~kLW   79 (327)
T KOG0643|consen    4 ILLQGHERPLTQIKYNREGDLLFSCAKDSTPTVWYSLN--GERLGTYDGHTGAVWCCDIDW--DSKHLITGSADQTAKLW   79 (327)
T ss_pred             cccccCccccceEEecCCCcEEEEecCCCCceEEEecC--CceeeeecCCCceEEEEEecC--CcceeeeccccceeEEE
Confidence            45779999999999999999999999999999996533  568899999999999998754  47899999999999999


Q ss_pred             EcCCCCceeEEEEecCCCCCeeEEEecCCCCCcEEEEEec-----CCcEEEEEecCCC-----CeeeeeecccCCCCeEE
Q 022111           85 KEGNQNDWTQAHTFNDHKSSVNSIAWAPHELGLSLACGSS-----DGNISVFTATADG-----GWDTTRIDQAHPVGVTS  154 (302)
Q Consensus        85 d~~~~~~~~~~~~~~~h~~~i~~l~~~pd~~~~~l~sg~~-----d~~v~~~~~~~~~-----~~~~~~~~~~h~~~v~~  154 (302)
                      |+++++   ++.+++ -..+|+.+.|+++  |.+++...+     .+.|.++|++...     .-....+. .+...+++
T Consensus        80 Dv~tGk---~la~~k-~~~~Vk~~~F~~~--gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~-t~~skit~  152 (327)
T KOG0643|consen   80 DVETGK---QLATWK-TNSPVKRVDFSFG--GNLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKIP-TPDSKITS  152 (327)
T ss_pred             EcCCCc---EEEEee-cCCeeEEEeeccC--CcEEEEEehhhcCcceEEEEEEccCChhhhcccCceEEec-CCccceee
Confidence            998874   555555 5678999999997  445554433     3578889887432     11122332 45678899


Q ss_pred             EEeCCCCCCCceeecccCCCceeEEEeeCCCcEEEEEEecCccccccccccccCCCceeEEEeeCCCCCCccEEEEEecC
Q 022111          155 VSWAPAMAPGALVGLGLLDPVQKLASCGCDNTVKVWKMYNGIWKMDCFPALQMHSDWVRSVAWAPNLGLPKSTIASASQD  234 (302)
Q Consensus       155 ~~~~~~~~~~~~~~~~~~~~~~~l~s~~~D~~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~l~s~s~D  234 (302)
                      ..|+|-              ++.|++|..||.|.+||++++..   .+..-..|...|+++.++||.    .+++++|.|
T Consensus       153 a~Wg~l--------------~~~ii~Ghe~G~is~~da~~g~~---~v~s~~~h~~~Ind~q~s~d~----T~FiT~s~D  211 (327)
T KOG0643|consen  153 ALWGPL--------------GETIIAGHEDGSISIYDARTGKE---LVDSDEEHSSKINDLQFSRDR----TYFITGSKD  211 (327)
T ss_pred             eeeccc--------------CCEEEEecCCCcEEEEEcccCce---eeechhhhccccccccccCCc----ceEEecccC
Confidence            999886              48999999999999999998752   334446688999999999995    889999999


Q ss_pred             CeEEEEEeccCCc---------------------------cee----------e----e-----------eeccCCCcEE
Q 022111          235 GTVVIWTCAKEGE---------------------------QWE----------G----R-----------VLKDFKTPVW  262 (302)
Q Consensus       235 ~~i~iwd~~~~~~---------------------------~~~----------~----~-----------~~~~~~~~v~  262 (302)
                      .+-++||+++..-                           +-.          +    +           .+++|-+||.
T Consensus       212 ttakl~D~~tl~v~Kty~te~PvN~aaisP~~d~VilgGGqeA~dVTTT~~r~GKFEArFyh~i~eEEigrvkGHFGPIN  291 (327)
T KOG0643|consen  212 TTAKLVDVRTLEVLKTYTTERPVNTAAISPLLDHVILGGGQEAMDVTTTSTRAGKFEARFYHLIFEEEIGRVKGHFGPIN  291 (327)
T ss_pred             ccceeeeccceeeEEEeeecccccceecccccceEEecCCceeeeeeeecccccchhhhHHHHHHHHHhccccccccCcc
Confidence            9999999865210                           000          0    0           0124557999


Q ss_pred             EEEEccCCCEEEEecCC-ceEEee
Q 022111          263 SVSWSLTGNLLAVADAN-NVTLWK  285 (302)
Q Consensus       263 ~~~~spdg~~la~~~~d-~i~~w~  285 (302)
                      +++|+|+|+-.++|+.| -|++.-
T Consensus       292 svAfhPdGksYsSGGEDG~VR~h~  315 (327)
T KOG0643|consen  292 SVAFHPDGKSYSSGGEDGYVRLHH  315 (327)
T ss_pred             eeEECCCCcccccCCCCceEEEEE
Confidence            99999999999999999 477754

>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=99.97  E-value=6.5e-29  Score=221.93  Aligned_cols=248  Identities=21%  Similarity=0.347  Sum_probs=192.4

Q ss_pred             ccccccceeEEEEccCCCEEEEeeCCCcEEEEeecCCCceEEEEecCcccCeEEEEeeCCCCCCEEEEEeCCCeEEEEEc
Q 022111            7 ETGHEDTVHDVAMDFYGKRLATASSDSSIKIIGLSNSASQHLATLKGHRGPVWQVAWAHPKFGSILASCSYDGQVIIWKE   86 (302)
Q Consensus         7 ~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~s~D~~i~iwd~   86 (302)
                      .+||...+++++++|||+++|+|+.||+|+|||..+  +-++.+|..|+..|+.++|..  .++.|++.|-||+|+.||+
T Consensus       346 QQgH~~~i~~l~YSpDgq~iaTG~eDgKVKvWn~~S--gfC~vTFteHts~Vt~v~f~~--~g~~llssSLDGtVRAwDl  421 (893)
T KOG0291|consen  346 QQGHSDRITSLAYSPDGQLIATGAEDGKVKVWNTQS--GFCFVTFTEHTSGVTAVQFTA--RGNVLLSSSLDGTVRAWDL  421 (893)
T ss_pred             ccccccceeeEEECCCCcEEEeccCCCcEEEEeccC--ceEEEEeccCCCceEEEEEEe--cCCEEEEeecCCeEEeeee
Confidence            468999999999999999999999999999999865  458889999999999999975  4889999999999999998


Q ss_pred             CCCCceeEEEEecCCC-CCeeEEEecCCCCCcEEEEEecCC-cEEEEEecCCCCeeeeeecccCCCCeEEEEeCCCCCCC
Q 022111           87 GNQNDWTQAHTFNDHK-SSVNSIAWAPHELGLSLACGSSDG-NISVFTATADGGWDTTRIDQAHPVGVTSVSWAPAMAPG  164 (302)
Q Consensus        87 ~~~~~~~~~~~~~~h~-~~i~~l~~~pd~~~~~l~sg~~d~-~v~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~  164 (302)
                      ...   ....+|+... -...|++.-|.  |.++.+|+.|. .|.+|++.++..   ..+..+|+.+|.+++|+|.+   
T Consensus       422 kRY---rNfRTft~P~p~QfscvavD~s--GelV~AG~~d~F~IfvWS~qTGql---lDiLsGHEgPVs~l~f~~~~---  490 (893)
T KOG0291|consen  422 KRY---RNFRTFTSPEPIQFSCVAVDPS--GELVCAGAQDSFEIFVWSVQTGQL---LDILSGHEGPVSGLSFSPDG---  490 (893)
T ss_pred             ccc---ceeeeecCCCceeeeEEEEcCC--CCEEEeeccceEEEEEEEeecCee---eehhcCCCCcceeeEEcccc---
Confidence            654   3445555332 23356776554  77888888886 788999876533   23335999999999999974   


Q ss_pred             ceeecccCCCceeEEEeeCCCcEEEEEEecCccccccccccccCCCceeEEEeeCCCCCCccEEEEEecCCeEEEEEecc
Q 022111          165 ALVGLGLLDPVQKLASCGCDNTVKVWKMYNGIWKMDCFPALQMHSDWVRSVAWAPNLGLPKSTIASASQDGTVVIWTCAK  244 (302)
Q Consensus       165 ~~~~~~~~~~~~~l~s~~~D~~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~l~s~s~D~~i~iwd~~~  244 (302)
                                 ..|+|+|.|++||+||+-......+   + -.+...+..++|.|+|    ..||+++.||.|.+||...
T Consensus       491 -----------~~LaS~SWDkTVRiW~if~s~~~vE---t-l~i~sdvl~vsfrPdG----~elaVaTldgqItf~d~~~  551 (893)
T KOG0291|consen  491 -----------SLLASGSWDKTVRIWDIFSSSGTVE---T-LEIRSDVLAVSFRPDG----KELAVATLDGQITFFDIKE  551 (893)
T ss_pred             -----------CeEEeccccceEEEEEeeccCceee---e-EeeccceeEEEEcCCC----CeEEEEEecceEEEEEhhh
Confidence                       6899999999999999975421111   2 2356669999999996    7899999999999999865


Q ss_pred             CCcce---------ee-----eeecc---CCCcEEEEEEccCCCEEEEecCC-ceEEeeecC
Q 022111          245 EGEQW---------EG-----RVLKD---FKTPVWSVSWSLTGNLLAVADAN-NVTLWKEAV  288 (302)
Q Consensus       245 ~~~~~---------~~-----~~~~~---~~~~v~~~~~spdg~~la~~~~d-~i~~w~~~~  288 (302)
                      .....         .+     ....+   -...+.++.||+||..|++|+.. .|.||++.+
T Consensus       552 ~~q~~~IdgrkD~~~gR~~~D~~ta~~sa~~K~Ftti~ySaDG~~IlAgG~sn~iCiY~v~~  613 (893)
T KOG0291|consen  552 AVQVGSIDGRKDLSGGRKETDRITAENSAKGKTFTTICYSADGKCILAGGESNSICIYDVPE  613 (893)
T ss_pred             ceeeccccchhhccccccccceeehhhcccCCceEEEEEcCCCCEEEecCCcccEEEEECch
Confidence            32110         00     01111   12468899999999999888766 799999764

>KOG0282 consensus mRNA splicing factor [Function unknown]

Probab=99.97  E-value=1.6e-30  Score=221.89  Aligned_cols=248  Identities=20%  Similarity=0.374  Sum_probs=196.9

Q ss_pred             cccccccceeEEEEcc-CCCEEEEeeCCCcEEEEeecCCCceEEEEecCcccCeEEEEeeCCCCCCEEEEEeCCCeEEEE
Q 022111            6 IETGHEDTVHDVAMDF-YGKRLATASSDSSIKIIGLSNSASQHLATLKGHRGPVWQVAWAHPKFGSILASCSYDGQVIIW   84 (302)
Q Consensus         6 ~~~~h~~~v~~~~~s~-~~~~l~s~~~d~~v~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~s~D~~i~iw   84 (302)
                      ++.||+..|+++.|.| .+.+|+|+|.|+.|+||++.. ...++.++.+|..+|..++|+.  .|..+.|+|.|+.+++|
T Consensus       209 ~~~gH~kgvsai~~fp~~~hLlLS~gmD~~vklW~vy~-~~~~lrtf~gH~k~Vrd~~~s~--~g~~fLS~sfD~~lKlw  285 (503)
T KOG0282|consen  209 NLSGHTKGVSAIQWFPKKGHLLLSGGMDGLVKLWNVYD-DRRCLRTFKGHRKPVRDASFNN--CGTSFLSASFDRFLKLW  285 (503)
T ss_pred             eccCCccccchhhhccceeeEEEecCCCceEEEEEEec-Ccceehhhhcchhhhhhhhccc--cCCeeeeeecceeeeee
Confidence            3679999999999999 889999999999999999965 3568899999999999999985  48999999999999999


Q ss_pred             EcCCCCceeEEEEecCCCCCeeEEEecCCCCCcEEEEEecCCcEEEEEecCCCCeeeeeecccCCCCeEEEEeCCCCCCC
Q 022111           85 KEGNQNDWTQAHTFNDHKSSVNSIAWAPHELGLSLACGSSDGNISVFTATADGGWDTTRIDQAHPVGVTSVSWAPAMAPG  164 (302)
Q Consensus        85 d~~~~~~~~~~~~~~~h~~~i~~l~~~pd~~~~~l~sg~~d~~v~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~  164 (302)
                      |.+++.   +...+. -...++|+.|+||. ...+++|+.|+.|+.||++...-  .... ..|...|..+.|-+.    
T Consensus       286 DtETG~---~~~~f~-~~~~~~cvkf~pd~-~n~fl~G~sd~ki~~wDiRs~kv--vqeY-d~hLg~i~~i~F~~~----  353 (503)
T KOG0282|consen  286 DTETGQ---VLSRFH-LDKVPTCVKFHPDN-QNIFLVGGSDKKIRQWDIRSGKV--VQEY-DRHLGAILDITFVDE----  353 (503)
T ss_pred             ccccce---EEEEEe-cCCCceeeecCCCC-CcEEEEecCCCcEEEEeccchHH--HHHH-HhhhhheeeeEEccC----
Confidence            998874   444543 34678899999996 46899999999999999985421  1122 257778888888775    


Q ss_pred             ceeecccCCCceeEEEeeCCCcEEEEEEecCc-----------------------c-------------------ccccc
Q 022111          165 ALVGLGLLDPVQKLASCGCDNTVKVWKMYNGI-----------------------W-------------------KMDCF  202 (302)
Q Consensus       165 ~~~~~~~~~~~~~l~s~~~D~~v~iwd~~~~~-----------------------~-------------------~~~~~  202 (302)
                                +.+++|.+.|++++||+.+.+.                       |                   .+...
T Consensus       354 ----------g~rFissSDdks~riWe~~~~v~ik~i~~~~~hsmP~~~~~P~~~~~~aQs~dN~i~ifs~~~~~r~nkk  423 (503)
T KOG0282|consen  354 ----------GRRFISSSDDKSVRIWENRIPVPIKNIADPEMHTMPCLTLHPNGKWFAAQSMDNYIAIFSTVPPFRLNKK  423 (503)
T ss_pred             ----------CceEeeeccCccEEEEEcCCCccchhhcchhhccCcceecCCCCCeehhhccCceEEEEecccccccCHh
Confidence                      5889999999999999964421                       0                   01112


Q ss_pred             cccccCC--CceeEEEeeCCCCCCccEEEEEecCCeEEEEEeccCCcceeeeeeccCCCcEEEEEEccCC-CEEEEecCC
Q 022111          203 PALQMHS--DWVRSVAWAPNLGLPKSTIASASQDGTVVIWTCAKEGEQWEGRVLKDFKTPVWSVSWSLTG-NLLAVADAN  279 (302)
Q Consensus       203 ~~~~~h~--~~v~~v~~~p~~~~~~~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~spdg-~~la~~~~d  279 (302)
                      ..|.||.  +.-..|.||||+    .+|++|+.||.+.+||.++...   ...+..|..++.++.|+|.- ..+|+++=+
T Consensus       424 K~feGh~vaGys~~v~fSpDG----~~l~SGdsdG~v~~wdwkt~kl---~~~lkah~~~ci~v~wHP~e~Skvat~~w~  496 (503)
T KOG0282|consen  424 KRFEGHSVAGYSCQVDFSPDG----RTLCSGDSDGKVNFWDWKTTKL---VSKLKAHDQPCIGVDWHPVEPSKVATCGWD  496 (503)
T ss_pred             hhhcceeccCceeeEEEcCCC----CeEEeecCCccEEEeechhhhh---hhccccCCcceEEEEecCCCcceeEecccC
Confidence            3466775  445568999996    8899999999999999987532   23346778899999999954 677888777


Q ss_pred             -ceEEee
Q 022111          280 -NVTLWK  285 (302)
Q Consensus       280 -~i~~w~  285 (302)
                       .|++|+
T Consensus       497 G~Ikiwd  503 (503)
T KOG0282|consen  497 GLIKIWD  503 (503)
T ss_pred             ceeEecC
Confidence             599995

>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]

Probab=99.97  E-value=9.6e-30  Score=211.38  Aligned_cols=247  Identities=26%  Similarity=0.399  Sum_probs=191.4

Q ss_pred             cccccceeEEEEccCCCEEEEeeCCCcEEEEeecCCCceEEEEecCcccCeEEEEeeCCC-CCCEEEEEeCCCeEEEEEc
Q 022111            8 TGHEDTVHDVAMDFYGKRLATASSDSSIKIIGLSNSASQHLATLKGHRGPVWQVAWAHPK-FGSILASCSYDGQVIIWKE   86 (302)
Q Consensus         8 ~~h~~~v~~~~~s~~~~~l~s~~~d~~v~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~~-~~~~l~s~s~D~~i~iwd~   86 (302)
                      .-|.+-|.++...  ++++++|++||.+|+|+..+   +.+.++.||.++|.++.|...+ ....++++|.|.++++|.+
T Consensus       102 ~~hdDWVSsv~~~--~~~IltgsYDg~~riWd~~G---k~~~~~~Ght~~ik~v~~v~~n~~~~~fvsas~Dqtl~Lw~~  176 (423)
T KOG0313|consen  102 FLHDDWVSSVKGA--SKWILTGSYDGTSRIWDLKG---KSIKTIVGHTGPIKSVAWVIKNSSSCLFVSASMDQTLRLWKW  176 (423)
T ss_pred             ccchhhhhhhccc--CceEEEeecCCeeEEEecCC---ceEEEEecCCcceeeeEEEecCCccceEEEecCCceEEEEEe
Confidence            3688888887766  78999999999999999864   5677889999999988875432 2346999999999999988


Q ss_pred             CCCCc-eeEEEEecCCCCCeeEEEecCCCCCcEEEEEecCCcEEEEEecCCC-----------------------Ceeee
Q 022111           87 GNQND-WTQAHTFNDHKSSVNSIAWAPHELGLSLACGSSDGNISVFTATADG-----------------------GWDTT  142 (302)
Q Consensus        87 ~~~~~-~~~~~~~~~h~~~i~~l~~~pd~~~~~l~sg~~d~~v~~~~~~~~~-----------------------~~~~~  142 (302)
                      +.+.. ....+.-.+|+..|.+++..++  +.++++|++|.++.+|+...+.                       ...+.
T Consensus       177 ~~~~~~~~~~~~~~GHk~~V~sVsv~~s--gtr~~SgS~D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~P~v  254 (423)
T KOG0313|consen  177 NVGENKVKALKVCRGHKRSVDSVSVDSS--GTRFCSGSWDTMLKIWSVETDEEDELESSSNRRRKKQKREKEGGTRTPLV  254 (423)
T ss_pred             cCchhhhhHHhHhcccccceeEEEecCC--CCeEEeecccceeeecccCCCccccccccchhhhhhhhhhhcccccCceE
Confidence            64421 1233344589999999999887  7799999999999999832110                       01112


Q ss_pred             eecccCCCCeEEEEeCCCCCCCceeecccCCCceeEEEeeCCCcEEEEEEecCccccccccccccCCCceeEEEeeCCCC
Q 022111          143 RIDQAHPVGVTSVSWAPAMAPGALVGLGLLDPVQKLASCGCDNTVKVWKMYNGIWKMDCFPALQMHSDWVRSVAWAPNLG  222 (302)
Q Consensus       143 ~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~D~~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~  222 (302)
                      .+ .+|..+|.++.|++.               ..+.|++.|-+|+.||+.++..    ..++. -....+|++++|.. 
T Consensus       255 tl-~GHt~~Vs~V~w~d~---------------~v~yS~SwDHTIk~WDletg~~----~~~~~-~~ksl~~i~~~~~~-  312 (423)
T KOG0313|consen  255 TL-EGHTEPVSSVVWSDA---------------TVIYSVSWDHTIKVWDLETGGL----KSTLT-TNKSLNCISYSPLS-  312 (423)
T ss_pred             Ee-cccccceeeEEEcCC---------------CceEeecccceEEEEEeecccc----eeeee-cCcceeEeeccccc-
Confidence            23 489999999999874               5789999999999999988742    22222 23457999999974 


Q ss_pred             CCccEEEEEecCCeEEEEEeccCCcceeeeeeccCCCcEEEEEEccCC-CEEEEecCC-ceEEeee
Q 022111          223 LPKSTIASASQDGTVVIWTCAKEGEQWEGRVLKDFKTPVWSVSWSLTG-NLLAVADAN-NVTLWKE  286 (302)
Q Consensus       223 ~~~~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~spdg-~~la~~~~d-~i~~w~~  286 (302)
                         ..|++|+.|+.||+||.+.....-....+.+|...|.++.|+|.. .+|++++.| .+++||.
T Consensus       313 ---~Ll~~gssdr~irl~DPR~~~gs~v~~s~~gH~nwVssvkwsp~~~~~~~S~S~D~t~klWDv  375 (423)
T KOG0313|consen  313 ---KLLASGSSDRHIRLWDPRTGDGSVVSQSLIGHKNWVSSVKWSPTNEFQLVSGSYDNTVKLWDV  375 (423)
T ss_pred             ---ceeeecCCCCceeecCCCCCCCceeEEeeecchhhhhheecCCCCceEEEEEecCCeEEEEEe
Confidence               789999999999999998764433333457888999999999966 566888888 7999997

>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto

Probab=99.97  E-value=4e-28  Score=205.45  Aligned_cols=243  Identities=33%  Similarity=0.529  Sum_probs=196.1

Q ss_pred             cccccccceeEEEEccCCCEEEEeeCCCcEEEEeecCCCceEEEEecCcccCeEEEEeeCCCCCCEEEEEeCCCeEEEEE
Q 022111            6 IETGHEDTVHDVAMDFYGKRLATASSDSSIKIIGLSNSASQHLATLKGHRGPVWQVAWAHPKFGSILASCSYDGQVIIWK   85 (302)
Q Consensus         6 ~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~s~D~~i~iwd   85 (302)
                      ...+|...+..+.|++++++|++++.|+.|++|++...  +.+..+..|...|.++.|.++  ++++++++.|+.+++||
T Consensus        46 ~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~~~~~~--~~~~~~~~~~~~i~~~~~~~~--~~~~~~~~~~~~i~~~~  121 (289)
T cd00200          46 TLKGHTGPVRDVAASADGTYLASGSSDKTIRLWDLETG--ECVRTLTGHTSYVSSVAFSPD--GRILSSSSRDKTIKVWD  121 (289)
T ss_pred             EEecCCcceeEEEECCCCCEEEEEcCCCeEEEEEcCcc--cceEEEeccCCcEEEEEEcCC--CCEEEEecCCCeEEEEE
Confidence            35578889999999999999999999999999998753  345667789989999999764  67888888899999999


Q ss_pred             cCCCCceeEEEEecCCCCCeeEEEecCCCCCcEEEEEecCCcEEEEEecCCCCeeeeeecccCCCCeEEEEeCCCCCCCc
Q 022111           86 EGNQNDWTQAHTFNDHKSSVNSIAWAPHELGLSLACGSSDGNISVFTATADGGWDTTRIDQAHPVGVTSVSWAPAMAPGA  165 (302)
Q Consensus        86 ~~~~~~~~~~~~~~~h~~~i~~l~~~pd~~~~~l~sg~~d~~v~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~  165 (302)
                      +++.   .....+..|...|.+++|+|+  +.++++++.|+.+++||+......  ..+. .|...+.++.|+|++    
T Consensus       122 ~~~~---~~~~~~~~~~~~i~~~~~~~~--~~~l~~~~~~~~i~i~d~~~~~~~--~~~~-~~~~~i~~~~~~~~~----  189 (289)
T cd00200         122 VETG---KCLTTLRGHTDWVNSVAFSPD--GTFVASSSQDGTIKLWDLRTGKCV--ATLT-GHTGEVNSVAFSPDG----  189 (289)
T ss_pred             CCCc---EEEEEeccCCCcEEEEEEcCc--CCEEEEEcCCCcEEEEEccccccc--eeEe-cCccccceEEECCCc----
Confidence            9754   355667789999999999997  567888888999999998743322  2222 567789999998863    


Q ss_pred             eeecccCCCceeEEEeeCCCcEEEEEEecCccccccccccccCCCceeEEEeeCCCCCCccEEEEEecCCeEEEEEeccC
Q 022111          166 LVGLGLLDPVQKLASCGCDNTVKVWKMYNGIWKMDCFPALQMHSDWVRSVAWAPNLGLPKSTIASASQDGTVVIWTCAKE  245 (302)
Q Consensus       166 ~~~~~~~~~~~~l~s~~~D~~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~l~s~s~D~~i~iwd~~~~  245 (302)
                                ..+++++.|+.|++||++.+    .....+..|...|.+++|+|++    ..+++++.|+.|++||+...
T Consensus       190 ----------~~l~~~~~~~~i~i~d~~~~----~~~~~~~~~~~~i~~~~~~~~~----~~~~~~~~~~~i~i~~~~~~  251 (289)
T cd00200         190 ----------EKLLSSSSDGTIKLWDLSTG----KCLGTLRGHENGVNSVAFSPDG----YLLASGSEDGTIRVWDLRTG  251 (289)
T ss_pred             ----------CEEEEecCCCcEEEEECCCC----ceecchhhcCCceEEEEEcCCC----cEEEEEcCCCcEEEEEcCCc
Confidence                      57888888999999999865    2344566788899999999984    67888888999999998753


Q ss_pred             CcceeeeeeccCCCcEEEEEEccCCCEEEEecCC-ceEEee
Q 022111          246 GEQWEGRVLKDFKTPVWSVSWSLTGNLLAVADAN-NVTLWK  285 (302)
Q Consensus       246 ~~~~~~~~~~~~~~~v~~~~~spdg~~la~~~~d-~i~~w~  285 (302)
                      ..   ...+..+...+.+++|+|++++|++++.| .+++|+
T Consensus       252 ~~---~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iw~  289 (289)
T cd00200         252 EC---VQTLSGHTNSVTSLAWSPDGKRLASGSADGTIRIWD  289 (289)
T ss_pred             ee---EEEccccCCcEEEEEECCCCCEEEEecCCCeEEecC
Confidence            21   12234667789999999999999999888 799996

>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]

Probab=99.97  E-value=3.7e-28  Score=191.89  Aligned_cols=233  Identities=18%  Similarity=0.262  Sum_probs=183.6

Q ss_pred             CCEEEEeeCCCcEEEEeecCCCceEEEEecCcccCeEEEEeeCCCCCCEEEEEeCCCeEEEEEcCCCCceeEEEEecCCC
Q 022111           23 GKRLATASSDSSIKIIGLSNSASQHLATLKGHRGPVWQVAWAHPKFGSILASCSYDGQVIIWKEGNQNDWTQAHTFNDHK  102 (302)
Q Consensus        23 ~~~l~s~~~d~~v~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~h~  102 (302)
                      .-+|+|+|+|.+||+|...+  +.+..++.-.+.-|..++..|+  .+.||+++. ..||+||+++.++ .++.+|.+|+
T Consensus        10 ~viLvsA~YDhTIRfWqa~t--G~C~rTiqh~dsqVNrLeiTpd--k~~LAaa~~-qhvRlyD~~S~np-~Pv~t~e~h~   83 (311)
T KOG0315|consen   10 PVILVSAGYDHTIRFWQALT--GICSRTIQHPDSQVNRLEITPD--KKDLAAAGN-QHVRLYDLNSNNP-NPVATFEGHT   83 (311)
T ss_pred             ceEEEeccCcceeeeeehhc--CeEEEEEecCccceeeEEEcCC--cchhhhccC-CeeEEEEccCCCC-CceeEEeccC
Confidence            35899999999999999765  5678888766677999998764  567777665 6799999988765 3788999999


Q ss_pred             CCeeEEEecCCCCCcEEEEEecCCcEEEEEecCCCCeeeeeecccCCCCeEEEEeCCCCCCCceeecccCCCceeEEEee
Q 022111          103 SSVNSIAWAPHELGLSLACGSSDGNISVFTATADGGWDTTRIDQAHPVGVTSVSWAPAMAPGALVGLGLLDPVQKLASCG  182 (302)
Q Consensus       103 ~~i~~l~~~pd~~~~~l~sg~~d~~v~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~  182 (302)
                      ..|+++.|.-+  |...++|+.||+++|||++.....  ..  ..|..+|+++...|.              ...|++|.
T Consensus        84 kNVtaVgF~~d--grWMyTgseDgt~kIWdlR~~~~q--R~--~~~~spVn~vvlhpn--------------QteLis~d  143 (311)
T KOG0315|consen   84 KNVTAVGFQCD--GRWMYTGSEDGTVKIWDLRSLSCQ--RN--YQHNSPVNTVVLHPN--------------QTELISGD  143 (311)
T ss_pred             CceEEEEEeec--CeEEEecCCCceEEEEeccCcccc--hh--ccCCCCcceEEecCC--------------cceEEeec
Confidence            99999999877  889999999999999999863221  11  257789999998885              36799999


Q ss_pred             CCCcEEEEEEecCcccccccccccc-CCCceeEEEeeCCCCCCccEEEEEecCCeEEEEEeccCCcc--eee-eeeccCC
Q 022111          183 CDNTVKVWKMYNGIWKMDCFPALQM-HSDWVRSVAWAPNLGLPKSTIASASQDGTVVIWTCAKEGEQ--WEG-RVLKDFK  258 (302)
Q Consensus       183 ~D~~v~iwd~~~~~~~~~~~~~~~~-h~~~v~~v~~~p~~~~~~~~l~s~s~D~~i~iwd~~~~~~~--~~~-~~~~~~~  258 (302)
                      .+|.|++||+.+..    |...+.. -...|.++...||+    .+++.+..-|++.+|++-.....  ... .-...|.
T Consensus       144 qsg~irvWDl~~~~----c~~~liPe~~~~i~sl~v~~dg----sml~a~nnkG~cyvW~l~~~~~~s~l~P~~k~~ah~  215 (311)
T KOG0315|consen  144 QSGNIRVWDLGENS----CTHELIPEDDTSIQSLTVMPDG----SMLAAANNKGNCYVWRLLNHQTASELEPVHKFQAHN  215 (311)
T ss_pred             CCCcEEEEEccCCc----cccccCCCCCcceeeEEEcCCC----cEEEEecCCccEEEEEccCCCccccceEhhheeccc
Confidence            99999999998752    2222221 23579999999996    78999999999999998542111  000 1124566


Q ss_pred             CcEEEEEEccCCCEEEEecCC-ceEEeeecCC
Q 022111          259 TPVWSVSWSLTGNLLAVADAN-NVTLWKEAVD  289 (302)
Q Consensus       259 ~~v~~~~~spdg~~la~~~~d-~i~~w~~~~~  289 (302)
                      ..+..+.||||+++||++++| .++||....+
T Consensus       216 ~~il~C~lSPd~k~lat~ssdktv~iwn~~~~  247 (311)
T KOG0315|consen  216 GHILRCLLSPDVKYLATCSSDKTVKIWNTDDF  247 (311)
T ss_pred             ceEEEEEECCCCcEEEeecCCceEEEEecCCc
Confidence            779999999999999999999 7999997654

>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.97  E-value=1.8e-28  Score=192.32  Aligned_cols=246  Identities=21%  Similarity=0.297  Sum_probs=197.3

Q ss_pred             cccccccccceeEEEEccCCCEEEEeeCCCcEEEEeecCCCceEEEEecCcccCeEEEEeeCCCCCCEEEEEeCCCeEEE
Q 022111            4 QKIETGHEDTVHDVAMDFYGKRLATASSDSSIKIIGLSNSASQHLATLKGHRGPVWQVAWAHPKFGSILASCSYDGQVII   83 (302)
Q Consensus         4 ~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~s~D~~i~i   83 (302)
                      .+++.||..+|.+++.+.|+..|++||.|+.|.+||+.+  ++.+..+.+|.+.|+.++|+.  ++..++|||.|.++++
T Consensus        52 iktYsghG~EVlD~~~s~Dnskf~s~GgDk~v~vwDV~T--Gkv~Rr~rgH~aqVNtV~fNe--esSVv~SgsfD~s~r~  127 (307)
T KOG0316|consen   52 IKTYSGHGHEVLDAALSSDNSKFASCGGDKAVQVWDVNT--GKVDRRFRGHLAQVNTVRFNE--ESSVVASGSFDSSVRL  127 (307)
T ss_pred             eeeecCCCceeeeccccccccccccCCCCceEEEEEccc--CeeeeecccccceeeEEEecC--cceEEEeccccceeEE
Confidence            356789999999999999999999999999999999976  567889999999999999974  3789999999999999


Q ss_pred             EEcCCCCceeEEEEecCCCCCeeEEEecCCCCCcEEEEEecCCcEEEEEecCCCCeeeeeecccCCCCeEEEEeCCCCCC
Q 022111           84 WKEGNQNDWTQAHTFNDHKSSVNSIAWAPHELGLSLACGSSDGNISVFTATADGGWDTTRIDQAHPVGVTSVSWAPAMAP  163 (302)
Q Consensus        84 wd~~~~~~~~~~~~~~~h~~~i~~l~~~pd~~~~~l~sg~~d~~v~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~  163 (302)
                      ||-++.. .++++.+....+.|.++..+.    ..+++|+.||+++.||++.+...  ..   -...+|+++++++++  
T Consensus       128 wDCRS~s-~ePiQildea~D~V~Si~v~~----heIvaGS~DGtvRtydiR~G~l~--sD---y~g~pit~vs~s~d~--  195 (307)
T KOG0316|consen  128 WDCRSRS-FEPIQILDEAKDGVSSIDVAE----HEIVAGSVDGTVRTYDIRKGTLS--SD---YFGHPITSVSFSKDG--  195 (307)
T ss_pred             EEcccCC-CCccchhhhhcCceeEEEecc----cEEEeeccCCcEEEEEeecceee--hh---hcCCcceeEEecCCC--
Confidence            9998754 468888988899999999874    37999999999999999865321  11   123468999999864  


Q ss_pred             CceeecccCCCceeEEEeeCCCcEEEEEEecCccccccccccccCCCceeEEEeeCCCCCCccEEEEEecCCeEEEEEec
Q 022111          164 GALVGLGLLDPVQKLASCGCDNTVKVWKMYNGIWKMDCFPALQMHSDWVRSVAWAPNLGLPKSTIASASQDGTVVIWTCA  243 (302)
Q Consensus       164 ~~~~~~~~~~~~~~l~s~~~D~~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~l~s~s~D~~i~iwd~~  243 (302)
                                  .+.+.++.|+++++.|-.++    +.+..++||.+.-..+..+-..  +..++++||+||.+.+||+.
T Consensus       196 ------------nc~La~~l~stlrLlDk~tG----klL~sYkGhkn~eykldc~l~q--sdthV~sgSEDG~Vy~wdLv  257 (307)
T KOG0316|consen  196 ------------NCSLASSLDSTLRLLDKETG----KLLKSYKGHKNMEYKLDCCLNQ--SDTHVFSGSEDGKVYFWDLV  257 (307)
T ss_pred             ------------CEEEEeeccceeeecccchh----HHHHHhcccccceeeeeeeecc--cceeEEeccCCceEEEEEec
Confidence                        68888899999999998887    5677889998766555443321  24789999999999999997


Q ss_pred             cCCcceeeeeeccCCCc-EEEEEEccCCCEEEEecCCceEEeee
Q 022111          244 KEGEQWEGRVLKDFKTP-VWSVSWSLTGNLLAVADANNVTLWKE  286 (302)
Q Consensus       244 ~~~~~~~~~~~~~~~~~-v~~~~~spdg~~la~~~~d~i~~w~~  286 (302)
                      .....   ..+.-+..+ +.++++.|....+.+|....+.+|..
T Consensus       258 d~~~~---sk~~~~~~v~v~dl~~hp~~~~f~~A~~~~~~~~~~  298 (307)
T KOG0316|consen  258 DETQI---SKLSVVSTVIVTDLSCHPTMDDFITATGHGDLFWYQ  298 (307)
T ss_pred             cceee---eeeccCCceeEEeeecccCccceeEecCCceeceee
Confidence            64311   112233344 78999999888888887777888864

>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=99.97  E-value=9.7e-29  Score=220.34  Aligned_cols=251  Identities=23%  Similarity=0.311  Sum_probs=201.8

Q ss_pred             ccccccceeEEEE-ccCCCEEEEeeCCCcEEEEeecCCCceEEEEecCcccCeEEEEeeCCCCCCEEEEEeCCCeEEEEE
Q 022111            7 ETGHEDTVHDVAM-DFYGKRLATASSDSSIKIIGLSNSASQHLATLKGHRGPVWQVAWAHPKFGSILASCSYDGQVIIWK   85 (302)
Q Consensus         7 ~~~h~~~v~~~~~-s~~~~~l~s~~~d~~v~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~s~D~~i~iwd   85 (302)
                      ..|-.+.|.+++| -|..++||.++..+.+|+|+......   ..+.||+..|.++....  .|.+|+|||.|.++++|.
T Consensus       319 ivG~ndEI~Dm~~lG~e~~~laVATNs~~lr~y~~~~~~c---~ii~GH~e~vlSL~~~~--~g~llat~sKD~svilWr  393 (775)
T KOG0319|consen  319 IVGYNDEILDMKFLGPEESHLAVATNSPELRLYTLPTSYC---QIIPGHTEAVLSLDVWS--SGDLLATGSKDKSVILWR  393 (775)
T ss_pred             hcCCchhheeeeecCCccceEEEEeCCCceEEEecCCCce---EEEeCchhheeeeeecc--cCcEEEEecCCceEEEEE
Confidence            3467789999997 46678999999999999998765333   36789999999998322  378999999999999998


Q ss_pred             cCCCC-ceeEEEEecCCCCCeeEEEecCCCCCcEEEEEecCCcEEEEEecCCCC--eee----eeecccCCCCeEEEEeC
Q 022111           86 EGNQN-DWTQAHTFNDHKSSVNSIAWAPHELGLSLACGSSDGNISVFTATADGG--WDT----TRIDQAHPVGVTSVSWA  158 (302)
Q Consensus        86 ~~~~~-~~~~~~~~~~h~~~i~~l~~~pd~~~~~l~sg~~d~~v~~~~~~~~~~--~~~----~~~~~~h~~~v~~~~~~  158 (302)
                      ++++. ...++.+..+|+..|.+++++... ...++++|.|.++++|++.....  ..+    ......|.-.|++++.+
T Consensus       394 ~~~~~~~~~~~a~~~gH~~svgava~~~~~-asffvsvS~D~tlK~W~l~~s~~~~~~~~~~~~~t~~aHdKdIN~Vaia  472 (775)
T KOG0319|consen  394 LNNNCSKSLCVAQANGHTNSVGAVAGSKLG-ASFFVSVSQDCTLKLWDLPKSKETAFPIVLTCRYTERAHDKDINCVAIA  472 (775)
T ss_pred             ecCCcchhhhhhhhcccccccceeeecccC-ccEEEEecCCceEEEecCCCcccccccceehhhHHHHhhcccccceEec
Confidence            84432 123556788999999999997653 45899999999999999875221  111    11223688889999999


Q ss_pred             CCCCCCceeecccCCCceeEEEeeCCCcEEEEEEecCccccccccccccCCCceeEEEeeCCCCCCccEEEEEecCCeEE
Q 022111          159 PAMAPGALVGLGLLDPVQKLASCGCDNTVKVWKMYNGIWKMDCFPALQMHSDWVRSVAWAPNLGLPKSTIASASQDGTVV  238 (302)
Q Consensus       159 ~~~~~~~~~~~~~~~~~~~l~s~~~D~~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~l~s~s~D~~i~  238 (302)
                      |+.              +++||||.|++.+||++...    ....++.||+-.|.||.|+|..    ..+||+|.|++||
T Consensus       473 ~nd--------------kLiAT~SqDktaKiW~le~~----~l~~vLsGH~RGvw~V~Fs~~d----q~laT~SgD~TvK  530 (775)
T KOG0319|consen  473 PND--------------KLIATGSQDKTAKIWDLEQL----RLLGVLSGHTRGVWCVSFSKND----QLLATCSGDKTVK  530 (775)
T ss_pred             CCC--------------ceEEecccccceeeecccCc----eEEEEeeCCccceEEEEecccc----ceeEeccCCceEE
Confidence            864              79999999999999999854    4567899999999999999974    7899999999999


Q ss_pred             EEEeccCCcceeeeeeccCCCcEEEEEEccCCCEEEEecCCc-eEEeeecC
Q 022111          239 IWTCAKEGEQWEGRVLKDFKTPVWSVSWSLTGNLLAVADANN-VTLWKEAV  288 (302)
Q Consensus       239 iwd~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~la~~~~d~-i~~w~~~~  288 (302)
                      ||.+..-   .......+|...|..++|-.+|++|++++.|+ ++||+...
T Consensus       531 IW~is~f---SClkT~eGH~~aVlra~F~~~~~qliS~~adGliKlWnikt  578 (775)
T KOG0319|consen  531 IWSISTF---SCLKTFEGHTSAVLRASFIRNGKQLISAGADGLIKLWNIKT  578 (775)
T ss_pred             EEEeccc---eeeeeecCccceeEeeeeeeCCcEEEeccCCCcEEEEeccc
Confidence            9999752   22344578888999999999999999999995 99999754

>PTZ00421 coronin; Provisional

Probab=99.97  E-value=1.2e-27  Score=217.24  Aligned_cols=253  Identities=17%  Similarity=0.226  Sum_probs=184.7

Q ss_pred             cccceeEEEEccCCCEEEEeeCCCcEEEEeecCCCc--------e---EEEEecCcccCeEEEEeeCCCCCCEEEEEeCC
Q 022111           10 HEDTVHDVAMDFYGKRLATASSDSSIKIIGLSNSAS--------Q---HLATLKGHRGPVWQVAWAHPKFGSILASCSYD   78 (302)
Q Consensus        10 h~~~v~~~~~s~~~~~l~s~~~d~~v~lw~~~~~~~--------~---~~~~~~~h~~~v~~v~~~~~~~~~~l~s~s~D   78 (302)
                      |-..|.....++++..+++++.+.....|+...+..        +   ....+.+|.+.|++++|+|. ++++|++|+.|
T Consensus        19 ~~~~i~~~~~~~d~~~~~~~n~~~~a~~w~~~gg~~v~~~~~~G~~~~~~~~l~GH~~~V~~v~fsP~-d~~~LaSgS~D   97 (493)
T PTZ00421         19 HFLNVTPSTALWDCSNTIACNDRFIAVPWQQLGSTAVLKHTDYGKLASNPPILLGQEGPIIDVAFNPF-DPQKLFTASED   97 (493)
T ss_pred             ceeccccccccCCCCCcEeECCceEEEEEecCCceEEeeccccccCCCCCceEeCCCCCEEEEEEcCC-CCCEEEEEeCC
Confidence            444555566677877778888888888887533210        0   01246789999999999863 47899999999


Q ss_pred             CeEEEEEcCCCCc----eeEEEEecCCCCCeeEEEecCCCCCcEEEEEecCCcEEEEEecCCCCeeeeeecccCCCCeEE
Q 022111           79 GQVIIWKEGNQND----WTQAHTFNDHKSSVNSIAWAPHELGLSLACGSSDGNISVFTATADGGWDTTRIDQAHPVGVTS  154 (302)
Q Consensus        79 ~~i~iwd~~~~~~----~~~~~~~~~h~~~i~~l~~~pd~~~~~l~sg~~d~~v~~~~~~~~~~~~~~~~~~~h~~~v~~  154 (302)
                      ++|++||+.+...    ..++..+.+|...|.+++|+|+. ..+|++|+.|++|++||+....  ....+ ..|...|.+
T Consensus        98 gtIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~-~~iLaSgs~DgtVrIWDl~tg~--~~~~l-~~h~~~V~s  173 (493)
T PTZ00421         98 GTIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSA-MNVLASAGADMVVNVWDVERGK--AVEVI-KCHSDQITS  173 (493)
T ss_pred             CEEEEEecCCCccccccCcceEEecCCCCcEEEEEeCcCC-CCEEEEEeCCCEEEEEECCCCe--EEEEE-cCCCCceEE
Confidence            9999999865321    13466788999999999999974 3589999999999999997542  22333 378889999


Q ss_pred             EEeCCCCCCCceeecccCCCceeEEEeeCCCcEEEEEEecCccccccccccccCCCc-eeEEEeeCCCCCCccEEEEEe-
Q 022111          155 VSWAPAMAPGALVGLGLLDPVQKLASCGCDNTVKVWKMYNGIWKMDCFPALQMHSDW-VRSVAWAPNLGLPKSTIASAS-  232 (302)
Q Consensus       155 ~~~~~~~~~~~~~~~~~~~~~~~l~s~~~D~~v~iwd~~~~~~~~~~~~~~~~h~~~-v~~v~~~p~~~~~~~~l~s~s-  232 (302)
                      ++|+|++              .+|++++.|++|+|||++++.    .+..+.+|.+. +..+.|.|+.    ..|++++ 
T Consensus       174 la~spdG--------------~lLatgs~Dg~IrIwD~rsg~----~v~tl~~H~~~~~~~~~w~~~~----~~ivt~G~  231 (493)
T PTZ00421        174 LEWNLDG--------------SLLCTTSKDKKLNIIDPRDGT----IVSSVEAHASAKSQRCLWAKRK----DLIITLGC  231 (493)
T ss_pred             EEEECCC--------------CEEEEecCCCEEEEEECCCCc----EEEEEecCCCCcceEEEEcCCC----CeEEEEec
Confidence            9999864              789999999999999998763    34566778765 3467888874    4555543 


Q ss_pred             ---cCCeEEEEEeccCCcceeeeeeccCCCcEEEEEEccCCCEEEEecC-C-ceEEeeecCCc
Q 022111          233 ---QDGTVVIWTCAKEGEQWEGRVLKDFKTPVWSVSWSLTGNLLAVADA-N-NVTLWKEAVDG  290 (302)
Q Consensus       233 ---~D~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~la~~~~-d-~i~~w~~~~~~  290 (302)
                         .|+.|++||++....... ....+....+....|+|++++|++++. | .|++|+.....
T Consensus       232 s~s~Dr~VklWDlr~~~~p~~-~~~~d~~~~~~~~~~d~d~~~L~lggkgDg~Iriwdl~~~~  293 (493)
T PTZ00421        232 SKSQQRQIMLWDTRKMASPYS-TVDLDQSSALFIPFFDEDTNLLYIGSKGEGNIRCFELMNER  293 (493)
T ss_pred             CCCCCCeEEEEeCCCCCCcee-EeccCCCCceEEEEEcCCCCEEEEEEeCCCeEEEEEeeCCc
Confidence               589999999986432211 111123345667789999999988763 6 79999986443

>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]

Probab=99.97  E-value=2.8e-29  Score=212.89  Aligned_cols=221  Identities=24%  Similarity=0.394  Sum_probs=180.2

Q ss_pred             CcccccccccceeEEEEccCC-CEEEEeeCCCcEEEEeecCCCc-----eEEEEecCcccCeEEEEeeCCCCCCEEEEEe
Q 022111            3 AQKIETGHEDTVHDVAMDFYG-KRLATASSDSSIKIIGLSNSAS-----QHLATLKGHRGPVWQVAWAHPKFGSILASCS   76 (302)
Q Consensus         3 ~~~~~~~h~~~v~~~~~s~~~-~~l~s~~~d~~v~lw~~~~~~~-----~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~s   76 (302)
                      +...+.||++.=++++|++.. -.|++++.|++|.+||+.....     .+...+.+|+..|..++|.+ ....++++++
T Consensus       169 Pdl~L~gH~~eg~glsWn~~~~g~Lls~~~d~~i~lwdi~~~~~~~~~~~p~~~~~~h~~~VeDV~~h~-~h~~lF~sv~  247 (422)
T KOG0264|consen  169 PDLRLKGHEKEGYGLSWNRQQEGTLLSGSDDHTICLWDINAESKEDKVVDPKTIFSGHEDVVEDVAWHP-LHEDLFGSVG  247 (422)
T ss_pred             CceEEEeecccccccccccccceeEeeccCCCcEEEEeccccccCCccccceEEeecCCcceehhhccc-cchhhheeec
Confidence            334677999988889999865 4889999999999999964332     23456789999999999965 4467899999


Q ss_pred             CCCeEEEEEcCCCCceeEEEEecCCCCCeeEEEecCCCCCcEEEEEecCCcEEEEEecCCCCeeeeeecccCCCCeEEEE
Q 022111           77 YDGQVIIWKEGNQNDWTQAHTFNDHKSSVNSIAWAPHELGLSLACGSSDGNISVFTATADGGWDTTRIDQAHPVGVTSVS  156 (302)
Q Consensus        77 ~D~~i~iwd~~~~~~~~~~~~~~~h~~~i~~l~~~pd~~~~~l~sg~~d~~v~~~~~~~~~~~~~~~~~~~h~~~v~~~~  156 (302)
                      .|+.+.|||.+.. ..++.+....|.++|.|++|+|-. +.+||+||.|++|+|||++.... .+..+. +|...|..+.
T Consensus       248 dd~~L~iwD~R~~-~~~~~~~~~ah~~~vn~~~fnp~~-~~ilAT~S~D~tV~LwDlRnL~~-~lh~~e-~H~dev~~V~  323 (422)
T KOG0264|consen  248 DDGKLMIWDTRSN-TSKPSHSVKAHSAEVNCVAFNPFN-EFILATGSADKTVALWDLRNLNK-PLHTFE-GHEDEVFQVE  323 (422)
T ss_pred             CCCeEEEEEcCCC-CCCCcccccccCCceeEEEeCCCC-CceEEeccCCCcEEEeechhccc-Cceecc-CCCcceEEEE
Confidence            9999999999863 334566677899999999999985 67899999999999999986543 344554 8999999999


Q ss_pred             eCCCCCCCceeecccCCCceeEEEeeCCCcEEEEEEecCcc----------ccccccccccCCCceeEEEeeCCCCCCcc
Q 022111          157 WAPAMAPGALVGLGLLDPVQKLASCGCDNTVKVWKMYNGIW----------KMDCFPALQMHSDWVRSVAWAPNLGLPKS  226 (302)
Q Consensus       157 ~~~~~~~~~~~~~~~~~~~~~l~s~~~D~~v~iwd~~~~~~----------~~~~~~~~~~h~~~v~~v~~~p~~~~~~~  226 (302)
                      |+|..             ...|||+|.|+.+.|||+..-..          ....+....||...|.+++|+|..   +-
T Consensus       324 WSPh~-------------etvLASSg~D~rl~vWDls~ig~eq~~eda~dgppEllF~HgGH~~kV~DfsWnp~e---PW  387 (422)
T KOG0264|consen  324 WSPHN-------------ETVLASSGTDRRLNVWDLSRIGEEQSPEDAEDGPPELLFIHGGHTAKVSDFSWNPNE---PW  387 (422)
T ss_pred             eCCCC-------------CceeEecccCCcEEEEeccccccccChhhhccCCcceeEEecCcccccccccCCCCC---Ce
Confidence            99975             47899999999999999864211          122334557999999999999985   68


Q ss_pred             EEEEEecCCeEEEEEecc
Q 022111          227 TIASASQDGTVVIWTCAK  244 (302)
Q Consensus       227 ~l~s~s~D~~i~iwd~~~  244 (302)
                      .|+|.++|+.+.||++..
T Consensus       388 ~I~SvaeDN~LqIW~~s~  405 (422)
T KOG0264|consen  388 TIASVAEDNILQIWQMAE  405 (422)
T ss_pred             EEEEecCCceEEEeeccc
Confidence            999999999999999863

>PTZ00421 coronin; Provisional

Probab=99.97  E-value=2e-27  Score=215.73  Aligned_cols=258  Identities=17%  Similarity=0.223  Sum_probs=182.3

Q ss_pred             cccccccceeEEEEcc-CCCEEEEeeCCCcEEEEeecCCC-----ceEEEEecCcccCeEEEEeeCCCCCCEEEEEeCCC
Q 022111            6 IETGHEDTVHDVAMDF-YGKRLATASSDSSIKIIGLSNSA-----SQHLATLKGHRGPVWQVAWAHPKFGSILASCSYDG   79 (302)
Q Consensus         6 ~~~~h~~~v~~~~~s~-~~~~l~s~~~d~~v~lw~~~~~~-----~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~s~D~   79 (302)
                      ++.||.+.|++++|+| ++++||+|+.|++|++|++....     ..++..+.+|...|.+++|+|. .+++|++++.|+
T Consensus        70 ~l~GH~~~V~~v~fsP~d~~~LaSgS~DgtIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~-~~~iLaSgs~Dg  148 (493)
T PTZ00421         70 ILLGQEGPIIDVAFNPFDPQKLFTASEDGTIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPS-AMNVLASAGADM  148 (493)
T ss_pred             eEeCCCCCEEEEEEcCCCCCEEEEEeCCCEEEEEecCCCccccccCcceEEecCCCCcEEEEEeCcC-CCCEEEEEeCCC
Confidence            3669999999999999 78899999999999999985431     1346778999999999999764 357999999999


Q ss_pred             eEEEEEcCCCCceeEEEEecCCCCCeeEEEecCCCCCcEEEEEecCCcEEEEEecCCCCeeeeeecccCCCC-eEEEEeC
Q 022111           80 QVIIWKEGNQNDWTQAHTFNDHKSSVNSIAWAPHELGLSLACGSSDGNISVFTATADGGWDTTRIDQAHPVG-VTSVSWA  158 (302)
Q Consensus        80 ~i~iwd~~~~~~~~~~~~~~~h~~~i~~l~~~pd~~~~~l~sg~~d~~v~~~~~~~~~~~~~~~~~~~h~~~-v~~~~~~  158 (302)
                      +|+|||++++   .....+..|...|.+++|+|+  +.+|++++.|++|++||.++...  ...+. .|... ...+.|.
T Consensus       149 tVrIWDl~tg---~~~~~l~~h~~~V~sla~spd--G~lLatgs~Dg~IrIwD~rsg~~--v~tl~-~H~~~~~~~~~w~  220 (493)
T PTZ00421        149 VVNVWDVERG---KAVEVIKCHSDQITSLEWNLD--GSLLCTTSKDKKLNIIDPRDGTI--VSSVE-AHASAKSQRCLWA  220 (493)
T ss_pred             EEEEEECCCC---eEEEEEcCCCCceEEEEEECC--CCEEEEecCCCEEEEEECCCCcE--EEEEe-cCCCCcceEEEEc
Confidence            9999999765   356678889999999999998  67999999999999999986432  22332 56443 4567787


Q ss_pred             CCCCCCceeecccCCCceeEEEee----CCCcEEEEEEecCcccccccccccc-CCCceeEEEeeCCCCCCccEEEEEe-
Q 022111          159 PAMAPGALVGLGLLDPVQKLASCG----CDNTVKVWKMYNGIWKMDCFPALQM-HSDWVRSVAWAPNLGLPKSTIASAS-  232 (302)
Q Consensus       159 ~~~~~~~~~~~~~~~~~~~l~s~~----~D~~v~iwd~~~~~~~~~~~~~~~~-h~~~v~~v~~~p~~~~~~~~l~s~s-  232 (302)
                      +..              ..|++++    .|+.|++||+++....   +..... +...+....|+|++    +.|++++ 
T Consensus       221 ~~~--------------~~ivt~G~s~s~Dr~VklWDlr~~~~p---~~~~~~d~~~~~~~~~~d~d~----~~L~lggk  279 (493)
T PTZ00421        221 KRK--------------DLIITLGCSKSQQRQIMLWDTRKMASP---YSTVDLDQSSALFIPFFDEDT----NLLYIGSK  279 (493)
T ss_pred             CCC--------------CeEEEEecCCCCCCeEEEEeCCCCCCc---eeEeccCCCCceEEEEEcCCC----CEEEEEEe
Confidence            753              4555543    4899999999864321   222222 23456667788885    6677766 


Q ss_pred             cCCeEEEEEeccCCcceeeeeeccCCCcEEEEEEccCCCEEEEecCC-ceEEeeecCCceEEEeeec
Q 022111          233 QDGTVVIWTCAKEGEQWEGRVLKDFKTPVWSVSWSLTGNLLAVADAN-NVTLWKEAVDGEWQQVSVV  298 (302)
Q Consensus       233 ~D~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~la~~~~d-~i~~w~~~~~~~~~~~~~~  298 (302)
                      .|+.|++||++.....  .........++.+++|.|.- .+ =.... -.++++... ...++....
T Consensus       280 gDg~Iriwdl~~~~~~--~~~~~~s~~~~~g~~~~pk~-~~-dv~~~Ei~r~~~l~~-~~i~pis~~  341 (493)
T PTZ00421        280 GEGNIRCFELMNERLT--FCSSYSSVEPHKGLCMMPKW-SL-DTRKCEIARFYALTY-HSLYTIQML  341 (493)
T ss_pred             CCCeEEEEEeeCCceE--EEeeccCCCCCcceEecccc-cc-cccceeeeEEEEecC-CeEEEEEEE
Confidence            5999999999864311  11112234567888888842 11 11122 357777643 335554443

>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]

Probab=99.97  E-value=5.6e-28  Score=208.27  Aligned_cols=252  Identities=18%  Similarity=0.379  Sum_probs=194.0

Q ss_pred             cccccccceeEEEEccCCCEEEEeeCCCcEEEEeecCCCceEEEEecCcccCeEEEEeeCCCCCCEEEEEeCC----CeE
Q 022111            6 IETGHEDTVHDVAMDFYGKRLATASSDSSIKIIGLSNSASQHLATLKGHRGPVWQVAWAHPKFGSILASCSYD----GQV   81 (302)
Q Consensus         6 ~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~s~D----~~i   81 (302)
                      .+..|.-.++-+.|+|.|.++|||...|+|||||.....--....++--.++|..|+|+.+  +++|+..++.    +.+
T Consensus        54 iYtEH~~~vtVAkySPsG~yiASGD~sG~vRIWdtt~~~hiLKnef~v~aG~I~Di~Wd~d--s~RI~avGEGrerfg~~  131 (603)
T KOG0318|consen   54 IYTEHAHQVTVAKYSPSGFYIASGDVSGKVRIWDTTQKEHILKNEFQVLAGPIKDISWDFD--SKRIAAVGEGRERFGHV  131 (603)
T ss_pred             eeccccceeEEEEeCCCceEEeecCCcCcEEEEeccCcceeeeeeeeecccccccceeCCC--CcEEEEEecCccceeEE
Confidence            4668988999999999999999999999999999865322222345556789999999864  7877776653    235


Q ss_pred             EEEEcCCCCceeEEEEecCCCCCeeEEEecCCCCCcEEEEEecCCcEEEEEecCCCCeeeeeecccCCCCeEEEEeCCCC
Q 022111           82 IIWKEGNQNDWTQAHTFNDHKSSVNSIAWAPHELGLSLACGSSDGNISVFTATADGGWDTTRIDQAHPVGVTSVSWAPAM  161 (302)
Q Consensus        82 ~iwd~~~~~~~~~~~~~~~h~~~i~~l~~~pd~~~~~l~sg~~d~~v~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~  161 (302)
                      .+||-  ++   .+..+.+|...|++++|-|.+ ..++++|++|+.|.+|+..   ++....-...|..-|.++.|+|++
T Consensus       132 F~~DS--G~---SvGei~GhSr~ins~~~KpsR-PfRi~T~sdDn~v~ffeGP---PFKFk~s~r~HskFV~~VRysPDG  202 (603)
T KOG0318|consen  132 FLWDS--GN---SVGEITGHSRRINSVDFKPSR-PFRIATGSDDNTVAFFEGP---PFKFKSSFREHSKFVNCVRYSPDG  202 (603)
T ss_pred             EEecC--CC---ccceeeccceeEeeeeccCCC-ceEEEeccCCCeEEEeeCC---CeeeeecccccccceeeEEECCCC
Confidence            56764  32   356788999999999999985 4689999999999999754   233322223677789999999974


Q ss_pred             CCCceeecccCCCceeEEEeeCCCcEEEEEEecCccccccccccccCCCceeEEEeeCCCCCCccEEEEEecCCeEEEEE
Q 022111          162 APGALVGLGLLDPVQKLASCGCDNTVKVWKMYNGIWKMDCFPALQMHSDWVRSVAWAPNLGLPKSTIASASQDGTVVIWT  241 (302)
Q Consensus       162 ~~~~~~~~~~~~~~~~l~s~~~D~~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~l~s~s~D~~i~iwd  241 (302)
                                    .++||.|.|+.+.+||-+++... ..+..-.+|++.|.+|+|+||+    .+|+|+|.|+++||||
T Consensus       203 --------------~~Fat~gsDgki~iyDGktge~v-g~l~~~~aHkGsIfalsWsPDs----~~~~T~SaDkt~KIWd  263 (603)
T KOG0318|consen  203 --------------SRFATAGSDGKIYIYDGKTGEKV-GELEDSDAHKGSIFALSWSPDS----TQFLTVSADKTIKIWD  263 (603)
T ss_pred             --------------CeEEEecCCccEEEEcCCCccEE-EEecCCCCccccEEEEEECCCC----ceEEEecCCceEEEEE
Confidence                          89999999999999999887422 1122234899999999999995    8899999999999999


Q ss_pred             eccCCc------------c-----eee-----------------------eeeccCCCcEEEEEEccCCCEEEEecCC-c
Q 022111          242 CAKEGE------------Q-----WEG-----------------------RVLKDFKTPVWSVSWSLTGNLLAVADAN-N  280 (302)
Q Consensus       242 ~~~~~~------------~-----~~~-----------------------~~~~~~~~~v~~~~~spdg~~la~~~~d-~  280 (302)
                      +....-            +     |+.                       .+..+|...|.+++.+||+++|.+|+.| .
T Consensus       264 Vs~~slv~t~~~~~~v~dqqvG~lWqkd~lItVSl~G~in~ln~~d~~~~~~i~GHnK~ITaLtv~~d~~~i~SgsyDG~  343 (603)
T KOG0318|consen  264 VSTNSLVSTWPMGSTVEDQQVGCLWQKDHLITVSLSGTINYLNPSDPSVLKVISGHNKSITALTVSPDGKTIYSGSYDGH  343 (603)
T ss_pred             eeccceEEEeecCCchhceEEEEEEeCCeEEEEEcCcEEEEecccCCChhheecccccceeEEEEcCCCCEEEeeccCce
Confidence            865320            0     110                       0123566779999999999999999999 5


Q ss_pred             eEEeeec
Q 022111          281 VTLWKEA  287 (302)
Q Consensus       281 i~~w~~~  287 (302)
                      |.-|+..
T Consensus       344 I~~W~~~  350 (603)
T KOG0318|consen  344 INSWDSG  350 (603)
T ss_pred             EEEEecC
Confidence            8889964

>PTZ00420 coronin; Provisional

Probab=99.97  E-value=1.8e-27  Score=217.39  Aligned_cols=230  Identities=14%  Similarity=0.250  Sum_probs=168.7

Q ss_pred             eeCCCcEEEEeecCCCceEEEEecCcccCeEEEEeeCCCCCCEEEEEeCCCeEEEEEcCCCCc-----eeEEEEecCCCC
Q 022111           29 ASSDSSIKIIGLSNSASQHLATLKGHRGPVWQVAWAHPKFGSILASCSYDGQVIIWKEGNQND-----WTQAHTFNDHKS  103 (302)
Q Consensus        29 ~~~d~~v~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~s~D~~i~iwd~~~~~~-----~~~~~~~~~h~~  103 (302)
                      ||.++.+++|+....  ..+..+.+|.+.|.+++|+|. .+++||||+.|++|+|||+.+...     ..+...+.+|..
T Consensus        50 GG~~gvI~L~~~~r~--~~v~~L~gH~~~V~~lafsP~-~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH~~  126 (568)
T PTZ00420         50 GGLIGAIRLENQMRK--PPVIKLKGHTSSILDLQFNPC-FSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGHKK  126 (568)
T ss_pred             CCceeEEEeeecCCC--ceEEEEcCCCCCEEEEEEcCC-CCCEEEEEeCCCeEEEEECCCCCccccccccceEEeecCCC
Confidence            667889999987543  457788999999999999764 368999999999999999865321     123446788999


Q ss_pred             CeeEEEecCCCCCcEEEEEecCCcEEEEEecCCCCeeeeeecccCCCCeEEEEeCCCCCCCceeecccCCCceeEEEeeC
Q 022111          104 SVNSIAWAPHELGLSLACGSSDGNISVFTATADGGWDTTRIDQAHPVGVTSVSWAPAMAPGALVGLGLLDPVQKLASCGC  183 (302)
Q Consensus       104 ~i~~l~~~pd~~~~~l~sg~~d~~v~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~  183 (302)
                      .|.+++|+|+. ..+|++++.|++|++||++....  ...+  .|...|.+++|+|++              .+|++++.
T Consensus       127 ~V~sVaf~P~g-~~iLaSgS~DgtIrIWDl~tg~~--~~~i--~~~~~V~SlswspdG--------------~lLat~s~  187 (568)
T PTZ00420        127 KISIIDWNPMN-YYIMCSSGFDSFVNIWDIENEKR--AFQI--NMPKKLSSLKWNIKG--------------NLLSGTCV  187 (568)
T ss_pred             cEEEEEECCCC-CeEEEEEeCCCeEEEEECCCCcE--EEEE--ecCCcEEEEEECCCC--------------CEEEEEec
Confidence            99999999983 24578999999999999975432  2222  355679999999864              78899999


Q ss_pred             CCcEEEEEEecCccccccccccccCCCceeEEE-----eeCCCCCCccEEEEEecCC----eEEEEEeccCCcceeeeee
Q 022111          184 DNTVKVWKMYNGIWKMDCFPALQMHSDWVRSVA-----WAPNLGLPKSTIASASQDG----TVVIWTCAKEGEQWEGRVL  254 (302)
Q Consensus       184 D~~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~-----~~p~~~~~~~~l~s~s~D~----~i~iwd~~~~~~~~~~~~~  254 (302)
                      |+.|+|||++++    ..+.++.+|.+.+.+..     |+|++    .+|+|++.|+    .|+|||++....+.....+
T Consensus       188 D~~IrIwD~Rsg----~~i~tl~gH~g~~~s~~v~~~~fs~d~----~~IlTtG~d~~~~R~VkLWDlr~~~~pl~~~~l  259 (568)
T PTZ00420        188 GKHMHIIDPRKQ----EIASSFHIHDGGKNTKNIWIDGLGGDD----NYILSTGFSKNNMREMKLWDLKNTTSALVTMSI  259 (568)
T ss_pred             CCEEEEEECCCC----cEEEEEecccCCceeEEEEeeeEcCCC----CEEEEEEcCCCCccEEEEEECCCCCCceEEEEe
Confidence            999999999876    34456788987655433     44664    6788888774    7999999854332211111


Q ss_pred             ccCCCcEEEEEEccCCCEEEEecCC-ceEEeeecC
Q 022111          255 KDFKTPVWSVSWSLTGNLLAVADAN-NVTLWKEAV  288 (302)
Q Consensus       255 ~~~~~~v~~~~~spdg~~la~~~~d-~i~~w~~~~  288 (302)
                      ......+...-..++|.++++|+.| +|++|+...
T Consensus       260 d~~~~~L~p~~D~~tg~l~lsGkGD~tIr~~e~~~  294 (568)
T PTZ00420        260 DNASAPLIPHYDESTGLIYLIGKGDGNCRYYQHSL  294 (568)
T ss_pred             cCCccceEEeeeCCCCCEEEEEECCCeEEEEEccC
Confidence            2222333334445678999999888 799999853

>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]

Probab=99.97  E-value=7.2e-30  Score=201.73  Aligned_cols=244  Identities=16%  Similarity=0.267  Sum_probs=194.7

Q ss_pred             cccccccceeEEEEccCCCEEEEeeCCCcEEEEeecCCCceEEEEecCcccCeEEEEeeCCCCCCEEEEEeCCCeEEEEE
Q 022111            6 IETGHEDTVHDVAMDFYGKRLATASSDSSIKIIGLSNSASQHLATLKGHRGPVWQVAWAHPKFGSILASCSYDGQVIIWK   85 (302)
Q Consensus         6 ~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~s~D~~i~iwd   85 (302)
                      ++.||+++|++.+++.+....|+++.|-+-++||--+  +..+.+| .|+..|.+++|+.+  .++|+||+.++.+||+|
T Consensus        54 tfeghkgavw~~~l~~na~~aasaaadftakvw~a~t--gdelhsf-~hkhivk~~af~~d--s~~lltgg~ekllrvfd  128 (334)
T KOG0278|consen   54 TFEGHKGAVWSATLNKNATRAASAAADFTAKVWDAVT--GDELHSF-EHKHIVKAVAFSQD--SNYLLTGGQEKLLRVFD  128 (334)
T ss_pred             eeeccCcceeeeecCchhhhhhhhcccchhhhhhhhh--hhhhhhh-hhhheeeeEEeccc--chhhhccchHHHhhhhh
Confidence            5789999999999999999999999999999999644  3345555 59999999999854  78999999999999999


Q ss_pred             cCCCCceeEEEEecCCCCCeeEEEecCCCCCcEEEEEecCCcEEEEEecCCCCeeeeeecccCCCCeEEEEeCCCCCCCc
Q 022111           86 EGNQNDWTQAHTFNDHKSSVNSIAWAPHELGLSLACGSSDGNISVFTATADGGWDTTRIDQAHPVGVTSVSWAPAMAPGA  165 (302)
Q Consensus        86 ~~~~~~~~~~~~~~~h~~~i~~l~~~pd~~~~~l~sg~~d~~v~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~  165 (302)
                      ++...  .+...+.+|.+.|+.+-|+..+  ..+++.++|++||+||.+++...+...    .+..|+++..++++    
T Consensus       129 ln~p~--App~E~~ghtg~Ir~v~wc~eD--~~iLSSadd~tVRLWD~rTgt~v~sL~----~~s~VtSlEvs~dG----  196 (334)
T KOG0278|consen  129 LNRPK--APPKEISGHTGGIRTVLWCHED--KCILSSADDKTVRLWDHRTGTEVQSLE----FNSPVTSLEVSQDG----  196 (334)
T ss_pred             ccCCC--CCchhhcCCCCcceeEEEeccC--ceEEeeccCCceEEEEeccCcEEEEEe----cCCCCcceeeccCC----
Confidence            86543  3556788999999999998653  367777999999999998765433232    24558888888763    


Q ss_pred             eeecccCCCceeEEEeeCCCcEEEEEEecCccccccccccccCCCceeEEEeeCCCCCCccEEEEEecCCeEEEEEeccC
Q 022111          166 LVGLGLLDPVQKLASCGCDNTVKVWKMYNGIWKMDCFPALQMHSDWVRSVAWAPNLGLPKSTIASASQDGTVVIWTCAKE  245 (302)
Q Consensus       166 ~~~~~~~~~~~~l~s~~~D~~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~l~s~s~D~~i~iwd~~~~  245 (302)
                                 .+++-+..+.|++||.++-    ..+..+ .....|.+.+++|+.    ..+++|++|..++-||..+.
T Consensus       197 -----------~ilTia~gssV~Fwdaksf----~~lKs~-k~P~nV~SASL~P~k----~~fVaGged~~~~kfDy~Tg  256 (334)
T KOG0278|consen  197 -----------RILTIAYGSSVKFWDAKSF----GLLKSY-KMPCNVESASLHPKK----EFFVAGGEDFKVYKFDYNTG  256 (334)
T ss_pred             -----------CEEEEecCceeEEeccccc----cceeec-cCccccccccccCCC----ceEEecCcceEEEEEeccCC
Confidence                       5677778889999998763    222222 134568999999985    78999999999999998865


Q ss_pred             CcceeeeeeccCCCcEEEEEEccCCCEEEEecCC-ceEEeeecC
Q 022111          246 GEQWEGRVLKDFKTPVWSVSWSLTGNLLAVADAN-NVTLWKEAV  288 (302)
Q Consensus       246 ~~~~~~~~~~~~~~~v~~~~~spdg~~la~~~~d-~i~~w~~~~  288 (302)
                      .+.  ....++|.++|-+++|||||...|+|+.| +|+||++..
T Consensus       257 eEi--~~~nkgh~gpVhcVrFSPdGE~yAsGSEDGTirlWQt~~  298 (334)
T KOG0278|consen  257 EEI--GSYNKGHFGPVHCVRFSPDGELYASGSEDGTIRLWQTTP  298 (334)
T ss_pred             cee--eecccCCCCceEEEEECCCCceeeccCCCceEEEEEecC
Confidence            432  22247888999999999999999999999 799999843

>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.97  E-value=1.5e-29  Score=200.23  Aligned_cols=211  Identities=21%  Similarity=0.338  Sum_probs=176.6

Q ss_pred             cccccccccceeEEEEccC-CCEEEEeeCCCcEEEEeecCCCceEEEEecCcccCeEEEEeeCCCCCCEEEEEeCCCeEE
Q 022111            4 QKIETGHEDTVHDVAMDFY-GKRLATASSDSSIKIIGLSNSASQHLATLKGHRGPVWQVAWAHPKFGSILASCSYDGQVI   82 (302)
Q Consensus         4 ~~~~~~h~~~v~~~~~s~~-~~~l~s~~~d~~v~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~s~D~~i~   82 (302)
                      .+.++.|+.+|.++.|++- ++.++++|.|++|+||+...+  ..+.++.||...|+...|+| ..+++++++|.|++++
T Consensus        97 i~~~kEH~~EV~Svdwn~~~r~~~ltsSWD~TiKLW~~~r~--~Sv~Tf~gh~~~Iy~a~~sp-~~~nlfas~Sgd~~l~  173 (311)
T KOG0277|consen   97 IHKFKEHKREVYSVDWNTVRRRIFLTSSWDGTIKLWDPNRP--NSVQTFNGHNSCIYQAAFSP-HIPNLFASASGDGTLR  173 (311)
T ss_pred             hhHHHhhhhheEEeccccccceeEEeeccCCceEeecCCCC--cceEeecCCccEEEEEecCC-CCCCeEEEccCCceEE
Confidence            3457789999999999864 568888899999999997653  35788999999999999976 5789999999999999


Q ss_pred             EEEcCCCCceeEEEEecCCCCCeeEEEecCCCCCcEEEEEecCCcEEEEEecCCCCeeeeeecccCCCCeEEEEeCCCCC
Q 022111           83 IWKEGNQNDWTQAHTFNDHKSSVNSIAWAPHELGLSLACGSSDGNISVFTATADGGWDTTRIDQAHPVGVTSVSWAPAMA  162 (302)
Q Consensus        83 iwd~~~~~~~~~~~~~~~h~~~i~~l~~~pd~~~~~l~sg~~d~~v~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~  162 (302)
                      +||++....  .+ .+..|+..|.|+.|+.-. ...|+||+.|+.|+.||++.-. ..+..+. +|...|+.++|+|.. 
T Consensus       174 lwdvr~~gk--~~-~i~ah~~Eil~cdw~ky~-~~vl~Tg~vd~~vr~wDir~~r-~pl~eL~-gh~~AVRkvk~Sph~-  246 (311)
T KOG0277|consen  174 LWDVRSPGK--FM-SIEAHNSEILCCDWSKYN-HNVLATGGVDNLVRGWDIRNLR-TPLFELN-GHGLAVRKVKFSPHH-  246 (311)
T ss_pred             EEEecCCCc--ee-EEEeccceeEeecccccC-CcEEEecCCCceEEEEehhhcc-ccceeec-CCceEEEEEecCcch-
Confidence            999976542  22 377799999999999764 4689999999999999998543 3445664 899999999999965 


Q ss_pred             CCceeecccCCCceeEEEeeCCCcEEEEEEecCccccccccccccCCCceeEEEeeCCCCCCccEEEEEecCCeEEEEEe
Q 022111          163 PGALVGLGLLDPVQKLASCGCDNTVKVWKMYNGIWKMDCFPALQMHSDWVRSVAWAPNLGLPKSTIASASQDGTVVIWTC  242 (302)
Q Consensus       163 ~~~~~~~~~~~~~~~l~s~~~D~~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~l~s~s~D~~i~iwd~  242 (302)
                                  -..||||+.|-++||||...+.   .++.+..-|++.|..++||+..   +.++|+.+.|..+.||+.
T Consensus       247 ------------~~lLaSasYDmT~riw~~~~~d---s~~e~~~~HtEFv~g~Dws~~~---~~~vAs~gWDe~l~Vw~p  308 (311)
T KOG0277|consen  247 ------------ASLLASASYDMTVRIWDPERQD---SAIETVDHHTEFVCGLDWSLFD---PGQVASTGWDELLYVWNP  308 (311)
T ss_pred             ------------hhHhhhccccceEEecccccch---hhhhhhhccceEEecccccccc---Cceeeecccccceeeecc
Confidence                        2689999999999999987543   3455667899999999999863   689999999999999973

>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]

Probab=99.97  E-value=2.8e-28  Score=197.22  Aligned_cols=245  Identities=20%  Similarity=0.299  Sum_probs=194.1

Q ss_pred             cccccccceeEEEEccCCCEEEEeeCCCcEEEEeecCCCceEEEEecCcccCeEEEEeeCCCCCCEEEEEeCCCeEEEEE
Q 022111            6 IETGHEDTVHDVAMDFYGKRLATASSDSSIKIIGLSNSASQHLATLKGHRGPVWQVAWAHPKFGSILASCSYDGQVIIWK   85 (302)
Q Consensus         6 ~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~s~D~~i~iwd   85 (302)
                      +..||+++|..+.|.+|+..++|+|.|++|+.||.++  ++.+..+++|...|..+.- ..-...+|.|++.|+++++||
T Consensus        85 ~lkgHsgAVM~l~~~~d~s~i~S~gtDk~v~~wD~~t--G~~~rk~k~h~~~vNs~~p-~rrg~~lv~SgsdD~t~kl~D  161 (338)
T KOG0265|consen   85 VLKGHSGAVMELHGMRDGSHILSCGTDKTVRGWDAET--GKRIRKHKGHTSFVNSLDP-SRRGPQLVCSGSDDGTLKLWD  161 (338)
T ss_pred             eeccccceeEeeeeccCCCEEEEecCCceEEEEeccc--ceeeehhccccceeeecCc-cccCCeEEEecCCCceEEEEe
Confidence            4559999999999999999999999999999999876  5678889999999988873 223356789999999999999


Q ss_pred             cCCCCceeEEEEecCCCCCeeEEEecCCCCCcEEEEEecCCcEEEEEecCCCCeeeeeecccCCCCeEEEEeCCCCCCCc
Q 022111           86 EGNQNDWTQAHTFNDHKSSVNSIAWAPHELGLSLACGSSDGNISVFTATADGGWDTTRIDQAHPVGVTSVSWAPAMAPGA  165 (302)
Q Consensus        86 ~~~~~~~~~~~~~~~h~~~i~~l~~~pd~~~~~l~sg~~d~~v~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~  165 (302)
                      ++...   +++++. .+-+++++.|.-+  +..+.+|+-|+.|++||++.....  ..+ .+|...|+.+..+|.+    
T Consensus       162 ~R~k~---~~~t~~-~kyqltAv~f~d~--s~qv~sggIdn~ikvWd~r~~d~~--~~l-sGh~DtIt~lsls~~g----  228 (338)
T KOG0265|consen  162 IRKKE---AIKTFE-NKYQLTAVGFKDT--SDQVISGGIDNDIKVWDLRKNDGL--YTL-SGHADTITGLSLSRYG----  228 (338)
T ss_pred             ecccc---hhhccc-cceeEEEEEeccc--ccceeeccccCceeeeccccCcce--EEe-ecccCceeeEEeccCC----
Confidence            98642   444443 3556899999855  568999999999999999754322  233 4899999999988864    


Q ss_pred             eeecccCCCceeEEEeeCCCcEEEEEEecCccccccccccccCCC----ceeEEEeeCCCCCCccEEEEEecCCeEEEEE
Q 022111          166 LVGLGLLDPVQKLASCGCDNTVKVWKMYNGIWKMDCFPALQMHSD----WVRSVAWAPNLGLPKSTIASASQDGTVVIWT  241 (302)
Q Consensus       166 ~~~~~~~~~~~~l~s~~~D~~v~iwd~~~~~~~~~~~~~~~~h~~----~v~~v~~~p~~~~~~~~l~s~s~D~~i~iwd  241 (302)
                                .++.+=+.|+++++||++.-...-.|+..+.+|..    ....++|+|++    +.+.+|+.|+.+.+||
T Consensus       229 ----------s~llsnsMd~tvrvwd~rp~~p~~R~v~if~g~~hnfeknlL~cswsp~~----~~i~ags~dr~vyvwd  294 (338)
T KOG0265|consen  229 ----------SFLLSNSMDNTVRVWDVRPFAPSQRCVKIFQGHIHNFEKNLLKCSWSPNG----TKITAGSADRFVYVWD  294 (338)
T ss_pred             ----------CccccccccceEEEEEecccCCCCceEEEeecchhhhhhhcceeeccCCC----CccccccccceEEEee
Confidence                      78899999999999999864333344555665432    24568999985    7899999999999999


Q ss_pred             eccCCcceeeeeeccCCCcEEEEEEccCCCEEEEecCC-ceEE
Q 022111          242 CAKEGEQWEGRVLKDFKTPVWSVSWSLTGNLLAVADAN-NVTL  283 (302)
Q Consensus       242 ~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~la~~~~d-~i~~  283 (302)
                      .....   ....+.+|.+.|..++|+|...+|.++++| +|.+
T Consensus       295 ~~~r~---~lyklpGh~gsvn~~~Fhp~e~iils~~sdk~i~l  334 (338)
T KOG0265|consen  295 TTSRR---ILYKLPGHYGSVNEVDFHPTEPIILSCSSDKTIYL  334 (338)
T ss_pred             ccccc---EEEEcCCcceeEEEeeecCCCcEEEEeccCceeEe
Confidence            76532   123457888999999999999999999888 5655

>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]

Probab=99.97  E-value=2.3e-27  Score=196.37  Aligned_cols=245  Identities=17%  Similarity=0.314  Sum_probs=186.3

Q ss_pred             cccccccccceeEEEEccCCCEEEEeeCCCcEEEEeecCCCceEEEEecCcccCeEEEEeeCCCCCCEEEEEeCCCeEEE
Q 022111            4 QKIETGHEDTVHDVAMDFYGKRLATASSDSSIKIIGLSNSASQHLATLKGHRGPVWQVAWAHPKFGSILASCSYDGQVII   83 (302)
Q Consensus         4 ~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~s~D~~i~i   83 (302)
                      ..+|.+|++.|.+++.+|+.+++||||-|..-.||++.++  +....+.+|+..|+++.|+++  |.+||||..+|.|+|
T Consensus        57 ~~tF~~H~~svFavsl~P~~~l~aTGGgDD~AflW~~~~g--e~~~eltgHKDSVt~~~Fshd--gtlLATGdmsG~v~v  132 (399)
T KOG0296|consen   57 LVTFDKHTDSVFAVSLHPNNNLVATGGGDDLAFLWDISTG--EFAGELTGHKDSVTCCSFSHD--GTLLATGDMSGKVLV  132 (399)
T ss_pred             eeehhhcCCceEEEEeCCCCceEEecCCCceEEEEEccCC--cceeEecCCCCceEEEEEccC--ceEEEecCCCccEEE
Confidence            3468899999999999999999999999999999999764  367789999999999999974  899999999999999


Q ss_pred             EEcCCCCceeEEEEecCCCCCeeEEEecCCCCCcEEEEEecCCcEEEEEecCCCCeeeeeecccCCCCeEEEEeCCCCCC
Q 022111           84 WKEGNQNDWTQAHTFNDHKSSVNSIAWAPHELGLSLACGSSDGNISVFTATADGGWDTTRIDQAHPVGVTSVSWAPAMAP  163 (302)
Q Consensus        84 wd~~~~~~~~~~~~~~~h~~~i~~l~~~pd~~~~~l~sg~~d~~v~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~  163 (302)
                      |+..++.   ....+..--..|.=+.|+|.  +.+|++|+.||.+-.|.+...+..+   +-.+|..++++=.|.|++  
T Consensus       133 ~~~stg~---~~~~~~~e~~dieWl~WHp~--a~illAG~~DGsvWmw~ip~~~~~k---v~~Gh~~~ct~G~f~pdG--  202 (399)
T KOG0296|consen  133 FKVSTGG---EQWKLDQEVEDIEWLKWHPR--AHILLAGSTDGSVWMWQIPSQALCK---VMSGHNSPCTCGEFIPDG--  202 (399)
T ss_pred             EEcccCc---eEEEeecccCceEEEEeccc--ccEEEeecCCCcEEEEECCCcceee---EecCCCCCcccccccCCC--
Confidence            9987763   23334333456777888995  6799999999999999987543222   223677777766665542  


Q ss_pred             CceeecccCCCceeEEEee-------------------------------------------------------------
Q 022111          164 GALVGLGLLDPVQKLASCG-------------------------------------------------------------  182 (302)
Q Consensus       164 ~~~~~~~~~~~~~~l~s~~-------------------------------------------------------------  182 (302)
                                  ++++++.                                                             
T Consensus       203 ------------Kr~~tgy~dgti~~Wn~ktg~p~~~~~~~e~~~~~~~~~~~~~~~~~~g~~e~~~~~~~~~sgKVv~~  270 (399)
T KOG0296|consen  203 ------------KRILTGYDDGTIIVWNPKTGQPLHKITQAEGLELPCISLNLAGSTLTKGNSEGVACGVNNGSGKVVNC  270 (399)
T ss_pred             ------------ceEEEEecCceEEEEecCCCceeEEecccccCcCCccccccccceeEeccCCccEEEEccccceEEEe
Confidence                        4444444                                                             


Q ss_pred             -----------------------------------CCCcEEEEEEecCccccccccccccCCCceeEEEeeCCCCCCccE
Q 022111          183 -----------------------------------CDNTVKVWKMYNGIWKMDCFPALQMHSDWVRSVAWAPNLGLPKST  227 (302)
Q Consensus       183 -----------------------------------~D~~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~  227 (302)
                                                         .||+|-|||+....     ++..-.|...|..+.|-++     .+
T Consensus       271 ~n~~~~~l~~~~e~~~esve~~~~ss~lpL~A~G~vdG~i~iyD~a~~~-----~R~~c~he~~V~~l~w~~t-----~~  340 (399)
T KOG0296|consen  271 NNGTVPELKPSQEELDESVESIPSSSKLPLAACGSVDGTIAIYDLAAST-----LRHICEHEDGVTKLKWLNT-----DY  340 (399)
T ss_pred             cCCCCccccccchhhhhhhhhcccccccchhhcccccceEEEEecccch-----hheeccCCCceEEEEEcCc-----ch
Confidence                                               45555555543221     1222357778888888774     56


Q ss_pred             EEEEecCCeEEEEEeccCCcceeeeeeccCCCcEEEEEEccCCCEEEEecCC-ceEEeeec
Q 022111          228 IASASQDGTVVIWTCAKEGEQWEGRVLKDFKTPVWSVSWSLTGNLLAVADAN-NVTLWKEA  287 (302)
Q Consensus       228 l~s~s~D~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~la~~~~d-~i~~w~~~  287 (302)
                      |++++.||.||+||.|+...   .-...+|..+|..++++|+++++++++.| ..++++..
T Consensus       341 l~t~c~~g~v~~wDaRtG~l---~~~y~GH~~~Il~f~ls~~~~~vvT~s~D~~a~VF~v~  398 (399)
T KOG0296|consen  341 LLTACANGKVRQWDARTGQL---KFTYTGHQMGILDFALSPQKRLVVTVSDDNTALVFEVP  398 (399)
T ss_pred             heeeccCceEEeeeccccce---EEEEecCchheeEEEEcCCCcEEEEecCCCeEEEEecC
Confidence            89999999999999886532   12346888899999999999999999998 68888753

>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.96  E-value=5.4e-28  Score=195.70  Aligned_cols=257  Identities=21%  Similarity=0.291  Sum_probs=176.5

Q ss_pred             ccccccceeEEEEccCC-CEEEEeeCCCcEEEEeecCCCceEEEEecCcccCeEEEEeeCCCCCCEEEEEeCCCeEEEEE
Q 022111            7 ETGHEDTVHDVAMDFYG-KRLATASSDSSIKIIGLSNSASQHLATLKGHRGPVWQVAWAHPKFGSILASCSYDGQVIIWK   85 (302)
Q Consensus         7 ~~~h~~~v~~~~~s~~~-~~l~s~~~d~~v~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~s~D~~i~iwd   85 (302)
                      ....++.|.+|+|||.. .+++++|.|++||+|+++.......+....|.++|.+++|+.  +|..+++|+.|+++++||
T Consensus        23 ~~pP~DsIS~l~FSP~~~~~~~A~SWD~tVR~wevq~~g~~~~ka~~~~~~PvL~v~Wsd--dgskVf~g~~Dk~~k~wD  100 (347)
T KOG0647|consen   23 PNPPEDSISALAFSPQADNLLAAGSWDGTVRIWEVQNSGQLVPKAQQSHDGPVLDVCWSD--DGSKVFSGGCDKQAKLWD  100 (347)
T ss_pred             CCCcccchheeEeccccCceEEecccCCceEEEEEecCCcccchhhhccCCCeEEEEEcc--CCceEEeeccCCceEEEE
Confidence            34567889999999954 566689999999999997632112245678999999999985  489999999999999999


Q ss_pred             cCCCCceeEEEEecCCCCCeeEEEecCCCCCcEEEEEecCCcEEEEEecCCCCeeeeeec-------ccCCCCeEEE---
Q 022111           86 EGNQNDWTQAHTFNDHKSSVNSIAWAPHELGLSLACGSSDGNISVFTATADGGWDTTRID-------QAHPVGVTSV---  155 (302)
Q Consensus        86 ~~~~~~~~~~~~~~~h~~~i~~l~~~pd~~~~~l~sg~~d~~v~~~~~~~~~~~~~~~~~-------~~h~~~v~~~---  155 (302)
                      +.++    +..++..|.++|+++.|-+......|+|||+|++++.||.+.........+.       ..|+..|-..   
T Consensus       101 L~S~----Q~~~v~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~pv~t~~LPeRvYa~Dv~~pm~vVata~r  176 (347)
T KOG0647|consen  101 LASG----QVSQVAAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSNPVATLQLPERVYAADVLYPMAVVATAER  176 (347)
T ss_pred             ccCC----CeeeeeecccceeEEEEecCCCcceeEecccccceeecccCCCCeeeeeeccceeeehhccCceeEEEecCC
Confidence            9886    3556778999999999987643457999999999999999865432222111       0111111100   


Q ss_pred             ---EeCCCCCCC-----------ceeecccCCCceeEEEeeCCCcEEEEEEecCccccccccccccCC---------Cce
Q 022111          156 ---SWAPAMAPG-----------ALVGLGLLDPVQKLASCGCDNTVKVWKMYNGIWKMDCFPALQMHS---------DWV  212 (302)
Q Consensus       156 ---~~~~~~~~~-----------~~~~~~~~~~~~~l~s~~~D~~v~iwd~~~~~~~~~~~~~~~~h~---------~~v  212 (302)
                         .++....+.           ..-.+....+....+-|+-.|.+-|..+..+..+  .-.+|+.|+         ..|
T Consensus       177 ~i~vynL~n~~te~k~~~SpLk~Q~R~va~f~d~~~~alGsiEGrv~iq~id~~~~~--~nFtFkCHR~~~~~~~~VYaV  254 (347)
T KOG0647|consen  177 HIAVYNLENPPTEFKRIESPLKWQTRCVACFQDKDGFALGSIEGRVAIQYIDDPNPK--DNFTFKCHRSTNSVNDDVYAV  254 (347)
T ss_pred             cEEEEEcCCCcchhhhhcCcccceeeEEEEEecCCceEeeeecceEEEEecCCCCcc--CceeEEEeccCCCCCCceEEe
Confidence               011000000           0001112233445688999999999888765211  112233343         258


Q ss_pred             eEEEeeCCCCCCccEEEEEecCCeEEEEEeccCCcceeeeeeccCCCcEEEEEEccCCCEEEEecC
Q 022111          213 RSVAWAPNLGLPKSTIASASQDGTVVIWTCAKEGEQWEGRVLKDFKTPVWSVSWSLTGNLLAVADA  278 (302)
Q Consensus       213 ~~v~~~p~~~~~~~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~la~~~~  278 (302)
                      ++|+|+|..    .+|+|++.||++.+||-+.....   .....+..+|...+|+.+|.++|.|.+
T Consensus       255 Nsi~FhP~h----gtlvTaGsDGtf~FWDkdar~kL---k~s~~~~qpItcc~fn~~G~ifaYA~g  313 (347)
T KOG0647|consen  255 NSIAFHPVH----GTLVTAGSDGTFSFWDKDARTKL---KTSETHPQPITCCSFNRNGSIFAYALG  313 (347)
T ss_pred             cceEeeccc----ceEEEecCCceEEEecchhhhhh---hccCcCCCccceeEecCCCCEEEEEee
Confidence            899999974    78999999999999997653221   122456789999999999999988843

>KOG1407 consensus WD40 repeat protein [Function unknown]

Probab=99.96  E-value=3.8e-28  Score=193.04  Aligned_cols=240  Identities=23%  Similarity=0.365  Sum_probs=185.2

Q ss_pred             ccccccceeEEEEccCCCEEEEeeCCCcEEEEeecCCCceEEEEecCcccCeEEEEeeCCCCCCEEEEEeCCCeEEEEEc
Q 022111            7 ETGHEDTVHDVAMDFYGKRLATASSDSSIKIIGLSNSASQHLATLKGHRGPVWQVAWAHPKFGSILASCSYDGQVIIWKE   86 (302)
Q Consensus         7 ~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~s~D~~i~iwd~   86 (302)
                      +++|...|.+++|+.+|..||+|+-|+++++|+++......-....+|.+.|-.++|.|+ .++++++++.|++|++||+
T Consensus        16 ~~~~~~~v~Sv~wn~~g~~lasgs~dktv~v~n~e~~r~~~~~~~~gh~~svdql~w~~~-~~d~~atas~dk~ir~wd~   94 (313)
T KOG1407|consen   16 LQGHVQKVHSVAWNCDGTKLASGSFDKTVSVWNLERDRFRKELVYRGHTDSVDQLCWDPK-HPDLFATASGDKTIRIWDI   94 (313)
T ss_pred             hhhhhhcceEEEEcccCceeeecccCCceEEEEecchhhhhhhcccCCCcchhhheeCCC-CCcceEEecCCceEEEEEe
Confidence            568999999999999999999999999999999976432223345789999999999875 4789999999999999999


Q ss_pred             CCCCceeEEEEecCCCCCeeEEEecCCCCCcEEEEEecCCcEEEEEecCCCCeee-------------------------
Q 022111           87 GNQNDWTQAHTFNDHKSSVNSIAWAPHELGLSLACGSSDGNISVFTATADGGWDT-------------------------  141 (302)
Q Consensus        87 ~~~~~~~~~~~~~~h~~~i~~l~~~pd~~~~~l~sg~~d~~v~~~~~~~~~~~~~-------------------------  141 (302)
                      +..+   +........+. .-+.|+|+  |.+++.++.|..|.+.|.++......                         
T Consensus        95 r~~k---~~~~i~~~~en-i~i~wsp~--g~~~~~~~kdD~it~id~r~~~~~~~~~~~~e~ne~~w~~~nd~Fflt~Gl  168 (313)
T KOG1407|consen   95 RSGK---CTARIETKGEN-INITWSPD--GEYIAVGNKDDRITFIDARTYKIVNEEQFKFEVNEISWNNSNDLFFLTNGL  168 (313)
T ss_pred             ccCc---EEEEeeccCcc-eEEEEcCC--CCEEEEecCcccEEEEEecccceeehhcccceeeeeeecCCCCEEEEecCC
Confidence            8764   55555433344 44679998  67999999999999988764321000                         


Q ss_pred             -------------eeecccCCCCeEEEEeCCCCCCCceeecccCCCceeEEEeeCCCcEEEEEEecCccccccccccccC
Q 022111          142 -------------TRIDQAHPVGVTSVSWAPAMAPGALVGLGLLDPVQKLASCGCDNTVKVWKMYNGIWKMDCFPALQMH  208 (302)
Q Consensus       142 -------------~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~D~~v~iwd~~~~~~~~~~~~~~~~h  208 (302)
                                   ..-.++|+....++.|+              ++|++||+|+.|..+-+||+..-    -|.+.+.-+
T Consensus       169 G~v~ILsypsLkpv~si~AH~snCicI~f~--------------p~GryfA~GsADAlvSLWD~~EL----iC~R~isRl  230 (313)
T KOG1407|consen  169 GCVEILSYPSLKPVQSIKAHPSNCICIEFD--------------PDGRYFATGSADALVSLWDVDEL----ICERCISRL  230 (313)
T ss_pred             ceEEEEeccccccccccccCCcceEEEEEC--------------CCCceEeeccccceeeccChhHh----hhheeeccc
Confidence                         00001333334444444              45799999999999999999753    688888889


Q ss_pred             CCceeEEEeeCCCCCCccEEEEEecCCeEEEEEeccCCcceeeeeeccCCCcEEEEEEccCCCEEEEecCC
Q 022111          209 SDWVRSVAWAPNLGLPKSTIASASQDGTVVIWTCAKEGEQWEGRVLKDFKTPVWSVSWSLTGNLLAVADAN  279 (302)
Q Consensus       209 ~~~v~~v~~~p~~~~~~~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~la~~~~d  279 (302)
                      .-+|+.|+||-|+    ++||++|+|..|-|=++.+....|+    -...++..+|+|+|...+||.|.+|
T Consensus       231 dwpVRTlSFS~dg----~~lASaSEDh~IDIA~vetGd~~~e----I~~~~~t~tVAWHPk~~LLAyA~dd  293 (313)
T KOG1407|consen  231 DWPVRTLSFSHDG----RMLASASEDHFIDIAEVETGDRVWE----IPCEGPTFTVAWHPKRPLLAYACDD  293 (313)
T ss_pred             cCceEEEEeccCc----ceeeccCccceEEeEecccCCeEEE----eeccCCceeEEecCCCceeeEEecC
Confidence            9999999999885    7899999999998887776543332    2346788999999999999999665

>KOG0300 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.96  E-value=1.9e-28  Score=199.76  Aligned_cols=250  Identities=24%  Similarity=0.349  Sum_probs=201.5

Q ss_pred             ccccccccceeEEEEccCCCEEEEeeCCCcEEEEeecCCCceEEEEecCcccCeEEEEeeCCCCCCEEEEEeCCCeEEEE
Q 022111            5 KIETGHEDTVHDVAMDFYGKRLATASSDSSIKIIGLSNSASQHLATLKGHRGPVWQVAWAHPKFGSILASCSYDGQVIIW   84 (302)
Q Consensus         5 ~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~s~D~~i~iw   84 (302)
                      +.+.||++.|+.++.......+.+++.|.+.+||.++.  +.++.+..||.+.|.+|+|.+  .+.+++++|.|++..||
T Consensus       142 re~~GHkDGiW~Vaa~~tqpi~gtASADhTA~iWs~Es--g~CL~~Y~GH~GSVNsikfh~--s~~L~lTaSGD~taHIW  217 (481)
T KOG0300|consen  142 RELEGHKDGIWHVAADSTQPICGTASADHTARIWSLES--GACLATYTGHTGSVNSIKFHN--SGLLLLTASGDETAHIW  217 (481)
T ss_pred             hhhcccccceeeehhhcCCcceeecccccceeEEeecc--ccceeeecccccceeeEEecc--ccceEEEccCCcchHHH
Confidence            34779999999998877677999999999999999976  568889999999999999975  37899999999999999


Q ss_pred             Ec------CCCC-------------------------------ceeEEEEecCCCCCeeEEEecCCCCCcEEEEEecCCc
Q 022111           85 KE------GNQN-------------------------------DWTQAHTFNDHKSSVNSIAWAPHELGLSLACGSSDGN  127 (302)
Q Consensus        85 d~------~~~~-------------------------------~~~~~~~~~~h~~~i~~l~~~pd~~~~~l~sg~~d~~  127 (302)
                      ..      ..++                               -..++-.+++|...|.++.|-..  |+.++++++|++
T Consensus       218 ~~av~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~tiRvPl~~ltgH~~vV~a~dWL~g--g~Q~vTaSWDRT  295 (481)
T KOG0300|consen  218 KAAVNWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHTIRVPLMRLTGHRAVVSACDWLAG--GQQMVTASWDRT  295 (481)
T ss_pred             HHhhcCcCCCCCCCCCCCchhhhhcccccccccccccccCCceeeeeeeeeeccccceEehhhhcC--cceeeeeecccc
Confidence            62      1100                               01244568899999999999764  789999999999


Q ss_pred             EEEEEecCCCCeeeeeecccCCCCeEEEEeCCCCCCCceeecccCCCceeEEEeeCCCcEEEEEEecCcccccccccccc
Q 022111          128 ISVFTATADGGWDTTRIDQAHPVGVTSVSWAPAMAPGALVGLGLLDPVQKLASCGCDNTVKVWKMYNGIWKMDCFPALQM  207 (302)
Q Consensus       128 v~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~D~~v~iwd~~~~~~~~~~~~~~~~  207 (302)
                      -.+||++++...  ..+ .+|....+.++-.|.              .+++++.+.|.++++||.+..   +..+..|.|
T Consensus       296 AnlwDVEtge~v--~~L-tGHd~ELtHcstHpt--------------QrLVvTsSrDtTFRLWDFRea---I~sV~VFQG  355 (481)
T KOG0300|consen  296 ANLWDVETGEVV--NIL-TGHDSELTHCSTHPT--------------QRLVVTSSRDTTFRLWDFREA---IQSVAVFQG  355 (481)
T ss_pred             ceeeeeccCcee--ccc-cCcchhccccccCCc--------------ceEEEEeccCceeEeccchhh---cceeeeecc
Confidence            999999865322  233 388888888776664              478999999999999999854   344567899


Q ss_pred             CCCceeEEEeeCCCCCCccEEEEEecCCeEEEEEeccCCcceeeeeeccCCCcEEEEEEccCCCEEEEecCC-ceEEeee
Q 022111          208 HSDWVRSVAWAPNLGLPKSTIASASQDGTVVIWTCAKEGEQWEGRVLKDFKTPVWSVSWSLTGNLLAVADAN-NVTLWKE  286 (302)
Q Consensus       208 h~~~v~~v~~~p~~~~~~~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~la~~~~d-~i~~w~~  286 (302)
                      |.+.|+++.|+.+     ..+++||+|++|+|||++....+.. .  -....++..++.+..+.+||.-.++ .|+|||+
T Consensus       356 HtdtVTS~vF~~d-----d~vVSgSDDrTvKvWdLrNMRsplA-T--IRtdS~~NRvavs~g~~iIAiPhDNRqvRlfDl  427 (481)
T KOG0300|consen  356 HTDTVTSVVFNTD-----DRVVSGSDDRTVKVWDLRNMRSPLA-T--IRTDSPANRVAVSKGHPIIAIPHDNRQVRLFDL  427 (481)
T ss_pred             cccceeEEEEecC-----CceeecCCCceEEEeeeccccCcce-e--eecCCccceeEeecCCceEEeccCCceEEEEec
Confidence            9999999999976     5699999999999999986533211 1  2235678889999888899999877 6999998


Q ss_pred             cC
Q 022111          287 AV  288 (302)
Q Consensus       287 ~~  288 (302)
                      +.
T Consensus       428 nG  429 (481)
T KOG0300|consen  428 NG  429 (481)
T ss_pred             CC
Confidence            63

>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]

Probab=99.96  E-value=1.7e-28  Score=202.68  Aligned_cols=207  Identities=24%  Similarity=0.328  Sum_probs=175.3

Q ss_pred             EEEEecCcccCeEEEEeeCCCCCCEEEEEeCCCeEEEEEcCCCCceeEEEEecCCCCCeeEEEecCCCCCcEEEEEecCC
Q 022111           47 HLATLKGHRGPVWQVAWAHPKFGSILASCSYDGQVIIWKEGNQNDWTQAHTFNDHKSSVNSIAWAPHELGLSLACGSSDG  126 (302)
Q Consensus        47 ~~~~~~~h~~~v~~v~~~~~~~~~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~h~~~i~~l~~~pd~~~~~l~sg~~d~  126 (302)
                      ....+.+|.+-|.++++.|-  +..++||+.|++++|||+.++   ....++.+|...|..+++|+-.  .++.+++.|+
T Consensus       143 l~rVi~gHlgWVr~vavdP~--n~wf~tgs~DrtikIwDlatg---~LkltltGhi~~vr~vavS~rH--pYlFs~gedk  215 (460)
T KOG0285|consen  143 LYRVISGHLGWVRSVAVDPG--NEWFATGSADRTIKIWDLATG---QLKLTLTGHIETVRGVAVSKRH--PYLFSAGEDK  215 (460)
T ss_pred             ehhhhhhccceEEEEeeCCC--ceeEEecCCCceeEEEEcccC---eEEEeecchhheeeeeeecccC--ceEEEecCCC
Confidence            34567899999999999653  679999999999999999887   3667889999999999999863  4899999999


Q ss_pred             cEEEEEecCCCCeeeeeecccCCCCeEEEEeCCCCCCCceeecccCCCceeEEEeeCCCcEEEEEEecCccccccccccc
Q 022111          127 NISVFTATADGGWDTTRIDQAHPVGVTSVSWAPAMAPGALVGLGLLDPVQKLASCGCDNTVKVWKMYNGIWKMDCFPALQ  206 (302)
Q Consensus       127 ~v~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~D~~v~iwd~~~~~~~~~~~~~~~  206 (302)
                      .|+.||+....-   .+-..+|...|.+++..|.-              ..|+||+.|.++||||+++.    ..+..+.
T Consensus       216 ~VKCwDLe~nkv---IR~YhGHlS~V~~L~lhPTl--------------dvl~t~grDst~RvWDiRtr----~~V~~l~  274 (460)
T KOG0285|consen  216 QVKCWDLEYNKV---IRHYHGHLSGVYCLDLHPTL--------------DVLVTGGRDSTIRVWDIRTR----ASVHVLS  274 (460)
T ss_pred             eeEEEechhhhh---HHHhccccceeEEEeccccc--------------eeEEecCCcceEEEeeeccc----ceEEEec
Confidence            999999975321   12224888999999988864              68999999999999999986    4567889


Q ss_pred             cCCCceeEEEeeCCCCCCccEEEEEecCCeEEEEEeccCCcceeeeeeccCCCcEEEEEEccCCCEEEEecCCceEEeee
Q 022111          207 MHSDWVRSVAWAPNLGLPKSTIASASQDGTVVIWTCAKEGEQWEGRVLKDFKTPVWSVSWSLTGNLLAVADANNVTLWKE  286 (302)
Q Consensus       207 ~h~~~v~~v~~~p~~~~~~~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~la~~~~d~i~~w~~  286 (302)
                      ||..+|.+|.+.|..    -++++||.|++||+||++..+   ....+..|+..|.+++.+|.-..+|+++.|+++-|+.
T Consensus       275 GH~~~V~~V~~~~~d----pqvit~S~D~tvrlWDl~agk---t~~tlt~hkksvral~lhP~e~~fASas~dnik~w~~  347 (460)
T KOG0285|consen  275 GHTNPVASVMCQPTD----PQVITGSHDSTVRLWDLRAGK---TMITLTHHKKSVRALCLHPKENLFASASPDNIKQWKL  347 (460)
T ss_pred             CCCCcceeEEeecCC----CceEEecCCceEEEeeeccCc---eeEeeecccceeeEEecCCchhhhhccCCccceeccC
Confidence            999999999998853    569999999999999998643   2344567788899999999999999999999999998


Q ss_pred             cC
Q 022111          287 AV  288 (302)
Q Consensus       287 ~~  288 (302)
                      .+
T Consensus       348 p~  349 (460)
T KOG0285|consen  348 PE  349 (460)
T ss_pred             Cc
Confidence            65

>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.96  E-value=1e-27  Score=211.45  Aligned_cols=242  Identities=22%  Similarity=0.403  Sum_probs=193.6

Q ss_pred             ccccceeEEEEccCCCEEEEeeCCCcEEEEeecCCCceEEEEecC-cccCeEEEEeeCCCCCCEEEEEeCCCeEEEEEcC
Q 022111            9 GHEDTVHDVAMDFYGKRLATASSDSSIKIIGLSNSASQHLATLKG-HRGPVWQVAWAHPKFGSILASCSYDGQVIIWKEG   87 (302)
Q Consensus         9 ~h~~~v~~~~~s~~~~~l~s~~~d~~v~lw~~~~~~~~~~~~~~~-h~~~v~~v~~~~~~~~~~l~s~s~D~~i~iwd~~   87 (302)
                      -+++.|+++.|+++|.+||.|..+|+|.|||..+.  +.+..+.+ |...|-+++|.    +..+.+|+.|+.|..+|++
T Consensus       215 ~~~~~vtSv~ws~~G~~LavG~~~g~v~iwD~~~~--k~~~~~~~~h~~rvg~laW~----~~~lssGsr~~~I~~~dvR  288 (484)
T KOG0305|consen  215 FGEELVTSVKWSPDGSHLAVGTSDGTVQIWDVKEQ--KKTRTLRGSHASRVGSLAWN----SSVLSSGSRDGKILNHDVR  288 (484)
T ss_pred             cCCCceEEEEECCCCCEEEEeecCCeEEEEehhhc--cccccccCCcCceeEEEecc----CceEEEecCCCcEEEEEEe
Confidence            34789999999999999999999999999998653  34567777 99999999996    5789999999999999997


Q ss_pred             CCCceeEEEEecCCCCCeeEEEecCCCCCcEEEEEecCCcEEEEEecCCCCeeeeeecccCCCCeEEEEeCCCCCCCcee
Q 022111           88 NQNDWTQAHTFNDHKSSVNSIAWAPHELGLSLACGSSDGNISVFTATADGGWDTTRIDQAHPVGVTSVSWAPAMAPGALV  167 (302)
Q Consensus        88 ~~~~~~~~~~~~~h~~~i~~l~~~pd~~~~~l~sg~~d~~v~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~  167 (302)
                      ....  ...++.+|...|-.+.|++|  +.++|+|+.|+.+.|||.....  ....+. .|...|..++|+|..      
T Consensus       289 ~~~~--~~~~~~~H~qeVCgLkws~d--~~~lASGgnDN~~~Iwd~~~~~--p~~~~~-~H~aAVKA~awcP~q------  355 (484)
T KOG0305|consen  289 ISQH--VVSTLQGHRQEVCGLKWSPD--GNQLASGGNDNVVFIWDGLSPE--PKFTFT-EHTAAVKALAWCPWQ------  355 (484)
T ss_pred             cchh--hhhhhhcccceeeeeEECCC--CCeeccCCCccceEeccCCCcc--ccEEEe-ccceeeeEeeeCCCc------
Confidence            6543  22357889999999999998  6799999999999999984322  223343 799999999999964      


Q ss_pred             ecccCCCceeEEEe--eCCCcEEEEEEecCccccccccccccCCCceeEEEeeCCCCCCccEEEEEe-cCCeEEEEEecc
Q 022111          168 GLGLLDPVQKLASC--GCDNTVKVWKMYNGIWKMDCFPALQMHSDWVRSVAWAPNLGLPKSTIASAS-QDGTVVIWTCAK  244 (302)
Q Consensus       168 ~~~~~~~~~~l~s~--~~D~~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~l~s~s-~D~~i~iwd~~~  244 (302)
                             ...||+|  +.|++|++||..++.    .+... .-.+.|.+|.|+|..   ..++.+-+ .+..|.||++.+
T Consensus       356 -------~~lLAsGGGs~D~~i~fwn~~~g~----~i~~v-dtgsQVcsL~Wsk~~---kEi~sthG~s~n~i~lw~~ps  420 (484)
T KOG0305|consen  356 -------SGLLATGGGSADRCIKFWNTNTGA----RIDSV-DTGSQVCSLIWSKKY---KELLSTHGYSENQITLWKYPS  420 (484)
T ss_pred             -------cCceEEcCCCcccEEEEEEcCCCc----Eeccc-ccCCceeeEEEcCCC---CEEEEecCCCCCcEEEEeccc
Confidence                   3678887  459999999998763    22221 235679999999985   24454444 356799999876


Q ss_pred             CCcceeeeeeccCCCcEEEEEEccCCCEEEEecCC-ceEEeeec
Q 022111          245 EGEQWEGRVLKDFKTPVWSVSWSLTGNLLAVADAN-NVTLWKEA  287 (302)
Q Consensus       245 ~~~~~~~~~~~~~~~~v~~~~~spdg~~la~~~~d-~i~~w~~~  287 (302)
                      ...   ...+.+|...|..+++||||..|++|+.| ++++|+.=
T Consensus       421 ~~~---~~~l~gH~~RVl~la~SPdg~~i~t~a~DETlrfw~~f  461 (484)
T KOG0305|consen  421 MKL---VAELLGHTSRVLYLALSPDGETIVTGAADETLRFWNLF  461 (484)
T ss_pred             cce---eeeecCCcceeEEEEECCCCCEEEEecccCcEEecccc
Confidence            432   24457899999999999999999999998 89999963

>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]

Probab=99.96  E-value=6.3e-28  Score=196.15  Aligned_cols=253  Identities=21%  Similarity=0.317  Sum_probs=196.7

Q ss_pred             ccccccceeEEEEccCCCEEEEeeCCCcEEEEeecC-------------CC---ceEEEEecCcccCeEEEEeeCCCCCC
Q 022111            7 ETGHEDTVHDVAMDFYGKRLATASSDSSIKIIGLSN-------------SA---SQHLATLKGHRGPVWQVAWAHPKFGS   70 (302)
Q Consensus         7 ~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~lw~~~~-------------~~---~~~~~~~~~h~~~v~~v~~~~~~~~~   70 (302)
                      ..-|+.++.+.+|++||.++|+|+.|-.|+|.|++.             .+   -+.+.+|..|..+|+.+.|.|.  ..
T Consensus       108 lt~HK~~cR~aafs~DG~lvATGsaD~SIKildvermlaks~~~em~~~~~qa~hPvIRTlYDH~devn~l~FHPr--e~  185 (430)
T KOG0640|consen  108 LTSHKSPCRAAAFSPDGSLVATGSADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYDHVDEVNDLDFHPR--ET  185 (430)
T ss_pred             EeecccceeeeeeCCCCcEEEccCCcceEEEeehhhhhhhcchhhhccCCcccCCceEeehhhccCcccceeecch--hh
Confidence            557999999999999999999999999999999851             00   1357889999999999999653  68


Q ss_pred             EEEEEeCCCeEEEEEcCCCCceeEEEEecCCCCCeeEEEecCCCCCcEEEEEecCCcEEEEEecCCCCeeeeeecccCCC
Q 022111           71 ILASCSYDGQVIIWKEGNQNDWTQAHTFNDHKSSVNSIAWAPHELGLSLACGSSDGNISVFTATADGGWDTTRIDQAHPV  150 (302)
Q Consensus        71 ~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~h~~~i~~l~~~pd~~~~~l~sg~~d~~v~~~~~~~~~~~~~~~~~~~h~~  150 (302)
                      +|+|++.|++|+++|+......+..+.|+ -..+|.++.|+|.  |.+|+.|.+-..+++||+.+..++-.......|+.
T Consensus       186 ILiS~srD~tvKlFDfsK~saKrA~K~~q-d~~~vrsiSfHPs--GefllvgTdHp~~rlYdv~T~QcfvsanPd~qht~  262 (430)
T KOG0640|consen  186 ILISGSRDNTVKLFDFSKTSAKRAFKVFQ-DTEPVRSISFHPS--GEFLLVGTDHPTLRLYDVNTYQCFVSANPDDQHTG  262 (430)
T ss_pred             eEEeccCCCeEEEEecccHHHHHHHHHhh-ccceeeeEeecCC--CceEEEecCCCceeEEeccceeEeeecCccccccc
Confidence            99999999999999986532212223343 4578999999997  78999999999999999986554433334457899


Q ss_pred             CeEEEEeCCCCCCCceeecccCCCceeEEEeeCCCcEEEEEEecCccccccccccc-cCC-CceeEEEeeCCCCCCccEE
Q 022111          151 GVTSVSWAPAMAPGALVGLGLLDPVQKLASCGCDNTVKVWKMYNGIWKMDCFPALQ-MHS-DWVRSVAWAPNLGLPKSTI  228 (302)
Q Consensus       151 ~v~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~D~~v~iwd~~~~~~~~~~~~~~~-~h~-~~v~~v~~~p~~~~~~~~l  228 (302)
                      .|+++.+++.+              ...++++.||.|+|||--++    .|+.++. .|. ..|.+..|.-++    ++|
T Consensus       263 ai~~V~Ys~t~--------------~lYvTaSkDG~IklwDGVS~----rCv~t~~~AH~gsevcSa~Ftkn~----kyi  320 (430)
T KOG0640|consen  263 AITQVRYSSTG--------------SLYVTASKDGAIKLWDGVSN----RCVRTIGNAHGGSEVCSAVFTKNG----KYI  320 (430)
T ss_pred             ceeEEEecCCc--------------cEEEEeccCCcEEeeccccH----HHHHHHHhhcCCceeeeEEEccCC----eEE
Confidence            99999999864              78999999999999997765    5776664 464 468899998875    889


Q ss_pred             EEEecCCeEEEEEeccCCcc---------------------------------------ee-------eeeeccCCCcEE
Q 022111          229 ASASQDGTVVIWTCAKEGEQ---------------------------------------WE-------GRVLKDFKTPVW  262 (302)
Q Consensus       229 ~s~s~D~~i~iwd~~~~~~~---------------------------------------~~-------~~~~~~~~~~v~  262 (302)
                      ++.+.|..+++|.+.+..-.                                       |.       .....+|.+.+.
T Consensus       321 LsSG~DS~vkLWEi~t~R~l~~YtGAg~tgrq~~rtqAvFNhtEdyVl~pDEas~slcsWdaRtadr~~l~slgHn~a~R  400 (430)
T KOG0640|consen  321 LSSGKDSTVKLWEISTGRMLKEYTGAGTTGRQKHRTQAVFNHTEDYVLFPDEASNSLCSWDARTADRVALLSLGHNGAVR  400 (430)
T ss_pred             eecCCcceeeeeeecCCceEEEEecCCcccchhhhhhhhhcCccceEEccccccCceeeccccchhhhhhcccCCCCCce
Confidence            99999999999998653100                                       00       000123455666


Q ss_pred             EEEEccCCCEEEEecCC-ceEEeee
Q 022111          263 SVSWSLTGNLLAVADAN-NVTLWKE  286 (302)
Q Consensus       263 ~~~~spdg~~la~~~~d-~i~~w~~  286 (302)
                      .+.-||.+.-+.+++.| .+++|..
T Consensus       401 ~i~HSP~~p~FmTcsdD~raRFWyr  425 (430)
T KOG0640|consen  401 WIVHSPVEPAFMTCSDDFRARFWYR  425 (430)
T ss_pred             EEEeCCCCCceeeecccceeeeeee
Confidence            67778888888888888 7999975

>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=99.96  E-value=3e-27  Score=211.22  Aligned_cols=249  Identities=23%  Similarity=0.374  Sum_probs=197.7

Q ss_pred             cccccccceeEEEEccCCCEEEEeeCCCcEEEEeecCCCc--------------------------------------eE
Q 022111            6 IETGHEDTVHDVAMDFYGKRLATASSDSSIKIIGLSNSAS--------------------------------------QH   47 (302)
Q Consensus         6 ~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~lw~~~~~~~--------------------------------------~~   47 (302)
                      ...||+..|.+++++.+...++||+ .+.+++|+..+...                                      ..
T Consensus       368 ~~~GHR~dVRsl~vS~d~~~~~Sga-~~SikiWn~~t~kciRTi~~~y~l~~~Fvpgd~~Iv~G~k~Gel~vfdlaS~~l  446 (888)
T KOG0306|consen  368 EIGGHRSDVRSLCVSSDSILLASGA-GESIKIWNRDTLKCIRTITCGYILASKFVPGDRYIVLGTKNGELQVFDLASASL  446 (888)
T ss_pred             eeccchhheeEEEeecCceeeeecC-CCcEEEEEccCcceeEEeccccEEEEEecCCCceEEEeccCCceEEEEeehhhh
Confidence            3568999999999999888777764 66789998753211                                      01


Q ss_pred             EEEecCcccCeEEEEeeCCCCCCEEEEEeCCCeEEEEEcCCCC--ceeE--------EEEecCCCCCeeEEEecCCCCCc
Q 022111           48 LATLKGHRGPVWQVAWAHPKFGSILASCSYDGQVIIWKEGNQN--DWTQ--------AHTFNDHKSSVNSIAWAPHELGL  117 (302)
Q Consensus        48 ~~~~~~h~~~v~~v~~~~~~~~~~l~s~s~D~~i~iwd~~~~~--~~~~--------~~~~~~h~~~i~~l~~~pd~~~~  117 (302)
                      +.+..+|++.|+.++.+|+  ++.++|||.|.+|++||..-..  +.+.        ..++. -.+.|.|+.+|||  +.
T Consensus       447 ~Eti~AHdgaIWsi~~~pD--~~g~vT~saDktVkfWdf~l~~~~~gt~~k~lsl~~~rtLe-l~ddvL~v~~Spd--gk  521 (888)
T KOG0306|consen  447 VETIRAHDGAIWSISLSPD--NKGFVTGSADKTVKFWDFKLVVSVPGTQKKVLSLKHTRTLE-LEDDVLCVSVSPD--GK  521 (888)
T ss_pred             hhhhhccccceeeeeecCC--CCceEEecCCcEEEEEeEEEEeccCcccceeeeeccceEEe-ccccEEEEEEcCC--Cc
Confidence            2344689999999999875  7889999999999999963111  0011        11222 4578999999999  77


Q ss_pred             EEEEEecCCcEEEEEecCCCCeeeeeecccCCCCeEEEEeCCCCCCCceeecccCCCceeEEEeeCCCcEEEEEEecCcc
Q 022111          118 SLACGSSDGNISVFTATADGGWDTTRIDQAHPVGVTSVSWAPAMAPGALVGLGLLDPVQKLASCGCDNTVKVWKMYNGIW  197 (302)
Q Consensus       118 ~l~sg~~d~~v~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~D~~v~iwd~~~~~~  197 (302)
                      +||.+=.|++|++|-+.+-. +. ..+ .+|.-+|.++..+|+              ++.++|||.|++|++|-+.-|  
T Consensus       522 ~LaVsLLdnTVkVyflDtlK-Ff-lsL-YGHkLPV~smDIS~D--------------SklivTgSADKnVKiWGLdFG--  582 (888)
T KOG0306|consen  522 LLAVSLLDNTVKVYFLDTLK-FF-LSL-YGHKLPVLSMDISPD--------------SKLIVTGSADKNVKIWGLDFG--  582 (888)
T ss_pred             EEEEEeccCeEEEEEeccee-ee-eee-cccccceeEEeccCC--------------cCeEEeccCCCceEEeccccc--
Confidence            99999999999999876431 11 233 489999999999886              489999999999999999876  


Q ss_pred             ccccccccccCCCceeEEEeeCCCCCCccEEEEEecCCeEEEEEeccCCcceeeeeeccCCCcEEEEEEccCCCEEEEec
Q 022111          198 KMDCFPALQMHSDWVRSVAWAPNLGLPKSTIASASQDGTVVIWTCAKEGEQWEGRVLKDFKTPVWSVSWSLTGNLLAVAD  277 (302)
Q Consensus       198 ~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~la~~~  277 (302)
                        +|...+-+|.+.|.+|.|-|+.    ..+.|++.|+.++-||-..-.   .-..+.+|...||+++-+|+|.++++++
T Consensus       583 --DCHKS~fAHdDSvm~V~F~P~~----~~FFt~gKD~kvKqWDg~kFe---~iq~L~~H~~ev~cLav~~~G~~vvs~s  653 (888)
T KOG0306|consen  583 --DCHKSFFAHDDSVMSVQFLPKT----HLFFTCGKDGKVKQWDGEKFE---EIQKLDGHHSEVWCLAVSPNGSFVVSSS  653 (888)
T ss_pred             --hhhhhhhcccCceeEEEEcccc----eeEEEecCcceEEeechhhhh---hheeeccchheeeeeEEcCCCCeEEecc
Confidence              7888999999999999999974    679999999999999876421   1234578888999999999999999999


Q ss_pred             CC-ceEEeeecC
Q 022111          278 AN-NVTLWKEAV  288 (302)
Q Consensus       278 ~d-~i~~w~~~~  288 (302)
                      +| +|++|...+
T Consensus       654 hD~sIRlwE~td  665 (888)
T KOG0306|consen  654 HDKSIRLWERTD  665 (888)
T ss_pred             CCceeEeeeccC
Confidence            99 899998754

>PTZ00420 coronin; Provisional

Probab=99.96  E-value=2.3e-26  Score=210.11  Aligned_cols=264  Identities=16%  Similarity=0.224  Sum_probs=175.9

Q ss_pred             ccccccccceeEEEEccC-CCEEEEeeCCCcEEEEeecCCCc------eEEEEecCcccCeEEEEeeCCCCCCEEEEEeC
Q 022111            5 KIETGHEDTVHDVAMDFY-GKRLATASSDSSIKIIGLSNSAS------QHLATLKGHRGPVWQVAWAHPKFGSILASCSY   77 (302)
Q Consensus         5 ~~~~~h~~~v~~~~~s~~-~~~l~s~~~d~~v~lw~~~~~~~------~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~s~   77 (302)
                      ..+.+|.+.|.+++|+|+ +.+||||+.|++|+||++.....      .++..+.+|...|.+++|+|. ...+|+|++.
T Consensus        68 ~~L~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH~~~V~sVaf~P~-g~~iLaSgS~  146 (568)
T PTZ00420         68 IKLKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGHKKKISIIDWNPM-NYYIMCSSGF  146 (568)
T ss_pred             EEEcCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccccccceEEeecCCCcEEEEEECCC-CCeEEEEEeC
Confidence            346789999999999997 78999999999999999854211      234567899999999999764 2346789999


Q ss_pred             CCeEEEEEcCCCCceeEEEEecCCCCCeeEEEecCCCCCcEEEEEecCCcEEEEEecCCCCeeeeeecccCCCCeEEEEe
Q 022111           78 DGQVIIWKEGNQNDWTQAHTFNDHKSSVNSIAWAPHELGLSLACGSSDGNISVFTATADGGWDTTRIDQAHPVGVTSVSW  157 (302)
Q Consensus        78 D~~i~iwd~~~~~~~~~~~~~~~h~~~i~~l~~~pd~~~~~l~sg~~d~~v~~~~~~~~~~~~~~~~~~~h~~~v~~~~~  157 (302)
                      |++|+|||++...   ....+. |...|.+++|+|+  |.+|++++.|+.|++||.+....  ...+. +|...+.+..+
T Consensus       147 DgtIrIWDl~tg~---~~~~i~-~~~~V~Slswspd--G~lLat~s~D~~IrIwD~Rsg~~--i~tl~-gH~g~~~s~~v  217 (568)
T PTZ00420        147 DSFVNIWDIENEK---RAFQIN-MPKKLSSLKWNIK--GNLLSGTCVGKHMHIIDPRKQEI--ASSFH-IHDGGKNTKNI  217 (568)
T ss_pred             CCeEEEEECCCCc---EEEEEe-cCCcEEEEEECCC--CCEEEEEecCCEEEEEECCCCcE--EEEEe-cccCCceeEEE
Confidence            9999999997753   334444 5678999999998  67899999999999999986432  23333 67655433222


Q ss_pred             CCCCCCCceeecccCCCceeEEEeeCCC----cEEEEEEecCccccccccc--cccCCCceeEEEeeCCCCCCccEEEEE
Q 022111          158 APAMAPGALVGLGLLDPVQKLASCGCDN----TVKVWKMYNGIWKMDCFPA--LQMHSDWVRSVAWAPNLGLPKSTIASA  231 (302)
Q Consensus       158 ~~~~~~~~~~~~~~~~~~~~l~s~~~D~----~v~iwd~~~~~~~~~~~~~--~~~h~~~v~~v~~~p~~~~~~~~l~s~  231 (302)
                      ....         +..++.+|+|+|.|+    .|+|||++...   ..+..  +..+.+.+.. .|.++.   +..+++|
T Consensus       218 ~~~~---------fs~d~~~IlTtG~d~~~~R~VkLWDlr~~~---~pl~~~~ld~~~~~L~p-~~D~~t---g~l~lsG  281 (568)
T PTZ00420        218 WIDG---------LGGDDNYILSTGFSKNNMREMKLWDLKNTT---SALVTMSIDNASAPLIP-HYDEST---GLIYLIG  281 (568)
T ss_pred             Eeee---------EcCCCCEEEEEEcCCCCccEEEEEECCCCC---CceEEEEecCCccceEE-eeeCCC---CCEEEEE
Confidence            1100         111246788888774    79999998532   12222  2223333322 333432   4789999


Q ss_pred             ecCCeEEEEEeccCCcceeeeeecc--CCCcEEEEEEccCCCEEEEecCCceEEeeecCCceEEEeeecC
Q 022111          232 SQDGTVVIWTCAKEGEQWEGRVLKD--FKTPVWSVSWSLTGNLLAVADANNVTLWKEAVDGEWQQVSVVE  299 (302)
Q Consensus       232 s~D~~i~iwd~~~~~~~~~~~~~~~--~~~~v~~~~~spdg~~la~~~~d~i~~w~~~~~~~~~~~~~~~  299 (302)
                      +.|++||+|++....    ...+..  +..++.+++|.|... +=+-.-.-.|+++....+..++....-
T Consensus       282 kGD~tIr~~e~~~~~----~~~l~~~~s~~p~~g~~f~Pkr~-~dv~~cEi~R~~kl~~~~~i~pisf~v  346 (568)
T PTZ00420        282 KGDGNCRYYQHSLGS----IRKVNEYKSCSPFRSFGFLPKQI-CDVYKCEIGRVYKNENNSSIRPISFYV  346 (568)
T ss_pred             ECCCeEEEEEccCCc----EEeecccccCCCccceEEccccc-cCchhhhHhHHhhhcCCCeEEEEEEEe
Confidence            999999999996531    112222  346788999999632 212211235666654444455554443

>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.96  E-value=8.3e-27  Score=198.18  Aligned_cols=251  Identities=21%  Similarity=0.298  Sum_probs=186.4

Q ss_pred             cccccceeEEEEccCCCEEEEeeCCCcEEEEeecCCCceEEEEecCcccCeEEEEeeCCCCCCEEEEEeCCCeEEEEEcC
Q 022111            8 TGHEDTVHDVAMDFYGKRLATASSDSSIKIIGLSNSASQHLATLKGHRGPVWQVAWAHPKFGSILASCSYDGQVIIWKEG   87 (302)
Q Consensus         8 ~~h~~~v~~~~~s~~~~~l~s~~~d~~v~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~s~D~~i~iwd~~   87 (302)
                      .+|.+.+.+++.++||++||+|+.|..|.||+..+  .+++..+++|.+.|.+++|-..  ...|++++.|+++++|++.
T Consensus       199 ~~h~keil~~avS~Dgkylatgg~d~~v~Iw~~~t--~ehv~~~~ghr~~V~~L~fr~g--t~~lys~s~Drsvkvw~~~  274 (479)
T KOG0299|consen  199 KGHVKEILTLAVSSDGKYLATGGRDRHVQIWDCDT--LEHVKVFKGHRGAVSSLAFRKG--TSELYSASADRSVKVWSID  274 (479)
T ss_pred             ccccceeEEEEEcCCCcEEEecCCCceEEEecCcc--cchhhcccccccceeeeeeecC--ccceeeeecCCceEEEehh
Confidence            38999999999999999999999999999999865  5678889999999999999642  4578999999999999986


Q ss_pred             CCCceeEEEEecCCCCCeeEEEecCCCCCcEEEEEecCCcEEEEEecCCCCeeeeeecccCCCCeEEEEeCCCCCCCcee
Q 022111           88 NQNDWTQAHTFNDHKSSVNSIAWAPHELGLSLACGSSDGNISVFTATADGGWDTTRIDQAHPVGVTSVSWAPAMAPGALV  167 (302)
Q Consensus        88 ~~~~~~~~~~~~~h~~~i~~l~~~pd~~~~~l~sg~~d~~v~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~  167 (302)
                      ..   ..+.++.+|.+.|..+....-  ...+..|+.|+++++|++.....  + .+ .+|...+.+++|-.+       
T Consensus       275 ~~---s~vetlyGHqd~v~~IdaL~r--eR~vtVGgrDrT~rlwKi~eesq--l-if-rg~~~sidcv~~In~-------  338 (479)
T KOG0299|consen  275 QL---SYVETLYGHQDGVLGIDALSR--ERCVTVGGRDRTVRLWKIPEESQ--L-IF-RGGEGSIDCVAFIND-------  338 (479)
T ss_pred             Hh---HHHHHHhCCccceeeechhcc--cceEEeccccceeEEEeccccce--e-ee-eCCCCCeeeEEEecc-------
Confidence            54   356778899999999987643  34555666999999999964422  1 12 266777888887543       


Q ss_pred             ecccCCCceeEEEeeCCCcEEEEEEecCccccc--cc----ccc--ccCCCceeEEEeeCCCCCCccEEEEEecCCeEEE
Q 022111          168 GLGLLDPVQKLASCGCDNTVKVWKMYNGIWKMD--CF----PAL--QMHSDWVRSVAWAPNLGLPKSTIASASQDGTVVI  239 (302)
Q Consensus       168 ~~~~~~~~~~l~s~~~D~~v~iwd~~~~~~~~~--~~----~~~--~~h~~~v~~v~~~p~~~~~~~~l~s~s~D~~i~i  239 (302)
                              ..|+|||.+|.|.+|++.+....+.  .-    ..+  -.+..||++|+..|..    +.+|+||.+|.||+
T Consensus       339 --------~HfvsGSdnG~IaLWs~~KKkplf~~~~AHgv~~~~~~~~~~~Witsla~i~~s----dL~asGS~~G~vrL  406 (479)
T KOG0299|consen  339 --------EHFVSGSDNGSIALWSLLKKKPLFTSRLAHGVIPELDPVNGNFWITSLAVIPGS----DLLASGSWSGCVRL  406 (479)
T ss_pred             --------cceeeccCCceEEEeeecccCceeEeeccccccCCccccccccceeeeEecccC----ceEEecCCCCceEE
Confidence                    5799999999999999865321110  00    011  1234599999999974    78999999999999


Q ss_pred             EEeccCCcceeeeeeccCCCcEEEEEEccCCCEEEEecCC--ceEEeeecCCc
Q 022111          240 WTCAKEGEQWEGRVLKDFKTPVWSVSWSLTGNLLAVADAN--NVTLWKEAVDG  290 (302)
Q Consensus       240 wd~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~la~~~~d--~i~~w~~~~~~  290 (302)
                      |.+..+-+.......-...+-|++++|+++|++|++|-..  .+=.|-...++
T Consensus       407 W~i~~g~r~i~~l~~ls~~GfVNsl~f~~sgk~ivagiGkEhRlGRW~~~k~~  459 (479)
T KOG0299|consen  407 WKIEDGLRAINLLYSLSLVGFVNSLAFSNSGKRIVAGIGKEHRLGRWWCLKSG  459 (479)
T ss_pred             EEecCCccccceeeecccccEEEEEEEccCCCEEEEecccccccceeeEeecc
Confidence            9987653221111111245679999999999977777444  45556554433

>KOG0289 consensus mRNA splicing factor [General function prediction only]

Probab=99.96  E-value=1.3e-26  Score=195.78  Aligned_cols=250  Identities=20%  Similarity=0.319  Sum_probs=196.5

Q ss_pred             ceeEEEEccCCCEEEEeeCCCcEEEEeecCCCceEEEEecCcccCeEEEEeeCCCCCCEEEEEeCCCeEEEEEcCCCCce
Q 022111           13 TVHDVAMDFYGKRLATASSDSSIKIIGLSNSASQHLATLKGHRGPVWQVAWAHPKFGSILASCSYDGQVIIWKEGNQNDW   92 (302)
Q Consensus        13 ~v~~~~~s~~~~~l~s~~~d~~v~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~s~D~~i~iwd~~~~~~~   92 (302)
                      .+.++...+....+++||.|+++.++|...  .+.+..++||...|+.+.|+++  ...+++++.|..|++|......  
T Consensus       221 gi~ald~~~s~~~ilTGG~d~~av~~d~~s--~q~l~~~~Gh~kki~~v~~~~~--~~~v~~aSad~~i~vws~~~~s--  294 (506)
T KOG0289|consen  221 GITALDIIPSSSKILTGGEDKTAVLFDKPS--NQILATLKGHTKKITSVKFHKD--LDTVITASADEIIRVWSVPLSS--  294 (506)
T ss_pred             CeeEEeecCCCCcceecCCCCceEEEecch--hhhhhhccCcceEEEEEEeccc--hhheeecCCcceEEeecccccc--
Confidence            456666666557899999999999999754  3467789999999999999764  5678999999999999875442  


Q ss_pred             eEEEEecCCCCCeeEEEecCCCCCcEEEEEecCCcEEEEEecCCCCeeeeeecccCCCCeEEEEeCCCCCCCceeecccC
Q 022111           93 TQAHTFNDHKSSVNSIAWAPHELGLSLACGSSDGNISVFTATADGGWDTTRIDQAHPVGVTSVSWAPAMAPGALVGLGLL  172 (302)
Q Consensus        93 ~~~~~~~~h~~~i~~l~~~pd~~~~~l~sg~~d~~v~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~  172 (302)
                       +......|.++|+.+..+|.  |.+|++++.|++..+.|.+++........+ .....+++.+|+|++           
T Consensus       295 -~~~~~~~h~~~V~~ls~h~t--geYllsAs~d~~w~Fsd~~~g~~lt~vs~~-~s~v~~ts~~fHpDg-----------  359 (506)
T KOG0289|consen  295 -EPTSSRPHEEPVTGLSLHPT--GEYLLSASNDGTWAFSDISSGSQLTVVSDE-TSDVEYTSAAFHPDG-----------  359 (506)
T ss_pred             -CccccccccccceeeeeccC--CcEEEEecCCceEEEEEccCCcEEEEEeec-cccceeEEeeEcCCc-----------
Confidence             33455679999999999997  789999999999999999866543322221 233468899999874           


Q ss_pred             CCceeEEEeeCCCcEEEEEEecCccccccccccccCCCceeEEEeeCCCCCCccEEEEEecCCeEEEEEeccCCcceeee
Q 022111          173 DPVQKLASCGCDNTVKVWKMYNGIWKMDCFPALQMHSDWVRSVAWAPNLGLPKSTIASASQDGTVVIWTCAKEGEQWEGR  252 (302)
Q Consensus       173 ~~~~~l~s~~~D~~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~l~s~s~D~~i~iwd~~~~~~~~~~~  252 (302)
                         -.|++|..|+.|+|||+++.    .....|.+|.++|..|+|+.+|    .+||++++|+.|++||+|..... . .
T Consensus       360 ---Lifgtgt~d~~vkiwdlks~----~~~a~Fpght~~vk~i~FsENG----Y~Lat~add~~V~lwDLRKl~n~-k-t  426 (506)
T KOG0289|consen  360 ---LIFGTGTPDGVVKIWDLKSQ----TNVAKFPGHTGPVKAISFSENG----YWLATAADDGSVKLWDLRKLKNF-K-T  426 (506)
T ss_pred             ---eEEeccCCCceEEEEEcCCc----cccccCCCCCCceeEEEeccCc----eEEEEEecCCeEEEEEehhhccc-c-e
Confidence               78999999999999999876    3456788999999999999885    89999999999999999975432 1 1


Q ss_pred             eeccCCCcEEEEEEccCCCEEEEecCC-ceEEeeecCCceEEEeee
Q 022111          253 VLKDFKTPVWSVSWSLTGNLLAVADAN-NVTLWKEAVDGEWQQVSV  297 (302)
Q Consensus       253 ~~~~~~~~v~~~~~spdg~~la~~~~d-~i~~w~~~~~~~~~~~~~  297 (302)
                      +..+...++.++.|.+.|.+|++++.+ .|++++- ....|.+++.
T Consensus       427 ~~l~~~~~v~s~~fD~SGt~L~~~g~~l~Vy~~~k-~~k~W~~~~~  471 (506)
T KOG0289|consen  427 IQLDEKKEVNSLSFDQSGTYLGIAGSDLQVYICKK-KTKSWTEIKE  471 (506)
T ss_pred             eeccccccceeEEEcCCCCeEEeecceeEEEEEec-ccccceeeeh
Confidence            222223379999999999999999766 5666653 4567887764

>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]

Probab=99.95  E-value=1.3e-26  Score=214.76  Aligned_cols=256  Identities=27%  Similarity=0.406  Sum_probs=197.6

Q ss_pred             cc-ccceeEEEEccCCCEEEEee--CCCcEEEEeecC---------C-CceEEEEecCcccCeEEEEeeCCCCCCEEEEE
Q 022111            9 GH-EDTVHDVAMDFYGKRLATAS--SDSSIKIIGLSN---------S-ASQHLATLKGHRGPVWQVAWAHPKFGSILASC   75 (302)
Q Consensus         9 ~h-~~~v~~~~~s~~~~~l~s~~--~d~~v~lw~~~~---------~-~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~   75 (302)
                      +| +..|.++..+||+..+||||  .|+.++||+.+.         . -.+.+.++..|.+.|.|++|+++  |.+||+|
T Consensus        10 ~H~~~~IfSIdv~pdg~~~aTgGq~~d~~~~iW~~~~vl~~~~~~~~~l~k~l~~m~~h~~sv~CVR~S~d--G~~lAsG   87 (942)
T KOG0973|consen   10 NHNEKSIFSIDVHPDGVKFATGGQVLDGGIVIWSQDPVLDEKEEKNENLPKHLCTMDDHDGSVNCVRFSPD--GSYLASG   87 (942)
T ss_pred             ccCCeeEEEEEecCCceeEecCCccccccceeeccccccchhhhhhcccchhheeeccccCceeEEEECCC--CCeEeec
Confidence            45 45789999999999999999  999999998631         1 12346677889999999999874  9999999


Q ss_pred             eCCCeEEEEEcCCC---------------CceeEEEEecCCCCCeeEEEecCCCCCcEEEEEecCCcEEEEEecCCCCee
Q 022111           76 SYDGQVIIWKEGNQ---------------NDWTQAHTFNDHKSSVNSIAWAPHELGLSLACGSSDGNISVFTATADGGWD  140 (302)
Q Consensus        76 s~D~~i~iwd~~~~---------------~~~~~~~~~~~h~~~i~~l~~~pd~~~~~l~sg~~d~~v~~~~~~~~~~~~  140 (302)
                      |.|+.|.||+....               ..|+....+.+|...|..++|+|+  +.+|++++.|++|.+|+..+.   .
T Consensus        88 SDD~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp~--~~~lvS~s~DnsViiwn~~tF---~  162 (942)
T KOG0973|consen   88 SDDRLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSPD--DSLLVSVSLDNSVIIWNAKTF---E  162 (942)
T ss_pred             cCcceEEEeeecccCCcccccccccccccceeeEEEEEecCCCccceeccCCC--ccEEEEecccceEEEEccccc---e
Confidence            99999999987520               126677889999999999999998  669999999999999998754   2


Q ss_pred             eeeecccCCCCeEEEEeCCCCCCCceeecccCCCceeEEEeeCCCcEEEEEEecCc----------------------cc
Q 022111          141 TTRIDQAHPVGVTSVSWAPAMAPGALVGLGLLDPVQKLASCGCDNTVKVWKMYNGI----------------------WK  198 (302)
Q Consensus       141 ~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~D~~v~iwd~~~~~----------------------~~  198 (302)
                      ......+|...|..+.|.|.              |++|||-+.|++|+||+..+-.                      |.
T Consensus       163 ~~~vl~~H~s~VKGvs~DP~--------------Gky~ASqsdDrtikvwrt~dw~i~k~It~pf~~~~~~T~f~RlSWS  228 (942)
T KOG0973|consen  163 LLKVLRGHQSLVKGVSWDPI--------------GKYFASQSDDRTLKVWRTSDWGIEKSITKPFEESPLTTFFLRLSWS  228 (942)
T ss_pred             eeeeeecccccccceEECCc--------------cCeeeeecCCceEEEEEcccceeeEeeccchhhCCCcceeeecccC
Confidence            22223489999999999997              4899999999999999953310                      00


Q ss_pred             --------------------------cccccccccCCCceeEEEeeCCC--------C-CCc----cEEEEEecCCeEEE
Q 022111          199 --------------------------MDCFPALQMHSDWVRSVAWAPNL--------G-LPK----STIASASQDGTVVI  239 (302)
Q Consensus       199 --------------------------~~~~~~~~~h~~~v~~v~~~p~~--------~-~~~----~~l~s~s~D~~i~i  239 (302)
                                                .+.-..|.||..++.++.|+|..        . ..+    ..+|+||.|++|.|
T Consensus       229 PDG~~las~nA~n~~~~~~~IieR~tWk~~~~LvGH~~p~evvrFnP~lfe~~~~ng~~~~~~~~y~i~AvgSqDrSlSV  308 (942)
T KOG0973|consen  229 PDGHHLASPNAVNGGKSTIAIIERGTWKVDKDLVGHSAPVEVVRFNPKLFERNNKNGTSTQPNCYYCIAAVGSQDRSLSV  308 (942)
T ss_pred             CCcCeecchhhccCCcceeEEEecCCceeeeeeecCCCceEEEEeChHHhccccccCCccCCCcceEEEEEecCCccEEE
Confidence                                      01123467999999999999921        0 011    27999999999999


Q ss_pred             EEeccCCcceeeeeeccCCCcEEEEEEccCCCEEEEecCC-ceEEeeec
Q 022111          240 WTCAKEGEQWEGRVLKDFKTPVWSVSWSLTGNLLAVADAN-NVTLWKEA  287 (302)
Q Consensus       240 wd~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~la~~~~d-~i~~w~~~  287 (302)
                      |..... ++. .....=+...|..++|||||..|.+++-| +|.+.+..
T Consensus       309 W~T~~~-RPl-~vi~~lf~~SI~DmsWspdG~~LfacS~DGtV~~i~Fe  355 (942)
T KOG0973|consen  309 WNTALP-RPL-FVIHNLFNKSIVDMSWSPDGFSLFACSLDGTVALIHFE  355 (942)
T ss_pred             EecCCC-Cch-hhhhhhhcCceeeeeEcCCCCeEEEEecCCeEEEEEcc
Confidence            987432 221 11122345679999999999888888788 78887764

>KOG0294 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.95  E-value=3.6e-26  Score=186.18  Aligned_cols=245  Identities=18%  Similarity=0.308  Sum_probs=186.7

Q ss_pred             cccccccccceeEEEEccCCCEEEEeeCCCcEEEEeecCCCceEEEEecCcccCeEEEEeeCCCCCCEEEEEeCCCeEEE
Q 022111            4 QKIETGHEDTVHDVAMDFYGKRLATASSDSSIKIIGLSNSASQHLATLKGHRGPVWQVAWAHPKFGSILASCSYDGQVII   83 (302)
Q Consensus         4 ~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~s~D~~i~i   83 (302)
                      ...+..|..++++++.+  +.++||||.|-+|+|||+..  ...+..+-.|.+.|+++.|.+|.....|.+|+.||.|.+
T Consensus        36 lF~~~aH~~sitavAVs--~~~~aSGssDetI~IYDm~k--~~qlg~ll~HagsitaL~F~~~~S~shLlS~sdDG~i~i  111 (362)
T KOG0294|consen   36 LFAFSAHAGSITALAVS--GPYVASGSSDETIHIYDMRK--RKQLGILLSHAGSITALKFYPPLSKSHLLSGSDDGHIII  111 (362)
T ss_pred             cccccccccceeEEEec--ceeEeccCCCCcEEEEeccc--hhhhcceeccccceEEEEecCCcchhheeeecCCCcEEE
Confidence            45577999999999876  89999999999999999864  345677888999999999988743347899999999999


Q ss_pred             EEcCCCCceeEEEEecCCCCCeeEEEecCCCCCcEEEEEecCCcEEEEEecCCCCeeeeeecccCCCCeEEEEeCCCCCC
Q 022111           84 WKEGNQNDWTQAHTFNDHKSSVNSIAWAPHELGLSLACGSSDGNISVFTATADGGWDTTRIDQAHPVGVTSVSWAPAMAP  163 (302)
Q Consensus        84 wd~~~~~~~~~~~~~~~h~~~i~~l~~~pd~~~~~l~sg~~d~~v~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~  163 (302)
                      |+.   ..|.++++++.|.+.|+.++.+|.  +++.++.+.|+.+++|++-.+..-....+  .+.  .+.+.|+|.+  
T Consensus       112 w~~---~~W~~~~slK~H~~~Vt~lsiHPS--~KLALsVg~D~~lr~WNLV~Gr~a~v~~L--~~~--at~v~w~~~G--  180 (362)
T KOG0294|consen  112 WRV---GSWELLKSLKAHKGQVTDLSIHPS--GKLALSVGGDQVLRTWNLVRGRVAFVLNL--KNK--ATLVSWSPQG--  180 (362)
T ss_pred             EEc---CCeEEeeeecccccccceeEecCC--CceEEEEcCCceeeeehhhcCccceeecc--CCc--ceeeEEcCCC--
Confidence            986   357899999999999999999997  77888999999999999875443222222  222  3448899864  


Q ss_pred             CceeecccCCCceeEEEeeCCCcEEEEEEecCccccccccccccCCCceeEEEeeCCCCCCccEEEEEecCCeEEEEEec
Q 022111          164 GALVGLGLLDPVQKLASCGCDNTVKVWKMYNGIWKMDCFPALQMHSDWVRSVAWAPNLGLPKSTIASASQDGTVVIWTCA  243 (302)
Q Consensus       164 ~~~~~~~~~~~~~~l~s~~~D~~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~l~s~s~D~~i~iwd~~  243 (302)
                                  .+++.++.++ |-+|.+.+..    ..... .....+.|+.|-.     +..+++|.+|+.|++||.+
T Consensus       181 ------------d~F~v~~~~~-i~i~q~d~A~----v~~~i-~~~~r~l~~~~l~-----~~~L~vG~d~~~i~~~D~d  237 (362)
T KOG0294|consen  181 ------------DHFVVSGRNK-IDIYQLDNAS----VFREI-ENPKRILCATFLD-----GSELLVGGDNEWISLKDTD  237 (362)
T ss_pred             ------------CEEEEEeccE-EEEEecccHh----Hhhhh-hccccceeeeecC-----CceEEEecCCceEEEeccC
Confidence                        6677777654 8889887542    11111 1123366666643     4689999999999999988


Q ss_pred             cCCcceeeeeeccCCCcEEEEEE--ccCCCEEEEecCC-ceEEeeecCC
Q 022111          244 KEGEQWEGRVLKDFKTPVWSVSW--SLTGNLLAVADAN-NVTLWKEAVD  289 (302)
Q Consensus       244 ~~~~~~~~~~~~~~~~~v~~~~~--spdg~~la~~~~d-~i~~w~~~~~  289 (302)
                      +...   ......|+..|.++.+  +|++.+|+++++| .|++||+..+
T Consensus       238 s~~~---~~~~~AH~~RVK~i~~~~~~~~~~lvTaSSDG~I~vWd~~~~  283 (362)
T KOG0294|consen  238 SDTP---LTEFLAHENRVKDIASYTNPEHEYLVTASSDGFIKVWDIDME  283 (362)
T ss_pred             CCcc---ceeeecchhheeeeEEEecCCceEEEEeccCceEEEEEcccc
Confidence            6321   1233678888998884  5788999999999 6999998543

>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]

Probab=99.95  E-value=3.4e-27  Score=203.11  Aligned_cols=259  Identities=14%  Similarity=0.192  Sum_probs=184.0

Q ss_pred             cccccccceeEEEEccCCCEEEEeeCCCcEEEEeecCCC--ceEEEEec-CcccCeEEEEeeCCCCCCEEEEEeCCCeEE
Q 022111            6 IETGHEDTVHDVAMDFYGKRLATASSDSSIKIIGLSNSA--SQHLATLK-GHRGPVWQVAWAHPKFGSILASCSYDGQVI   82 (302)
Q Consensus         6 ~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~lw~~~~~~--~~~~~~~~-~h~~~v~~v~~~~~~~~~~l~s~s~D~~i~   82 (302)
                      .+.+|+..|.++++.|.|..|+|||.|.+|+.||+....  .+....+. .-...|.+++|++.  |..|+..+...+++
T Consensus       162 ~l~hgtk~Vsal~~Dp~GaR~~sGs~Dy~v~~wDf~gMdas~~~fr~l~P~E~h~i~sl~ys~T--g~~iLvvsg~aqak  239 (641)
T KOG0772|consen  162 QLKHGTKIVSALAVDPSGARFVSGSLDYTVKFWDFQGMDASMRSFRQLQPCETHQINSLQYSVT--GDQILVVSGSAQAK  239 (641)
T ss_pred             eccCCceEEEEeeecCCCceeeeccccceEEEEecccccccchhhhccCcccccccceeeecCC--CCeEEEEecCccee
Confidence            466899999999999999999999999999999995422  11122221 23346899999864  66666677778999


Q ss_pred             EEEcCCCCc---------eeEEEEecCCCCCeeEEEecCCCCCcEEEEEecCCcEEEEEecCCCCee-e--eeecccCCC
Q 022111           83 IWKEGNQND---------WTQAHTFNDHKSSVNSIAWAPHELGLSLACGSSDGNISVFTATADGGWD-T--TRIDQAHPV  150 (302)
Q Consensus        83 iwd~~~~~~---------~~~~~~~~~h~~~i~~l~~~pd~~~~~l~sg~~d~~v~~~~~~~~~~~~-~--~~~~~~h~~  150 (302)
                      |+|-....-         ...+...++|...++|-+|+|+. ...++|++.|+++++|++....... .  .....+...
T Consensus       240 l~DRdG~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~-k~~FlT~s~DgtlRiWdv~~~k~q~qVik~k~~~g~Rv  318 (641)
T KOG0772|consen  240 LLDRDGFEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDN-KEEFLTCSYDGTLRIWDVNNTKSQLQVIKTKPAGGKRV  318 (641)
T ss_pred             EEccCCceeeeeeccchhhhhhhccCCceeeeeccccccCc-ccceEEecCCCcEEEEecCCchhheeEEeeccCCCccc
Confidence            998533211         11123456899999999999985 4579999999999999997543211 1  111123345


Q ss_pred             CeEEEEeCCCCCCCceeecccCCCceeEEEeeCCCcEEEEEEecCccccccccccccCCC--ceeEEEeeCCCCCCccEE
Q 022111          151 GVTSVSWAPAMAPGALVGLGLLDPVQKLASCGCDNTVKVWKMYNGIWKMDCFPALQMHSD--WVRSVAWAPNLGLPKSTI  228 (302)
Q Consensus       151 ~v~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~D~~v~iwd~~~~~~~~~~~~~~~~h~~--~v~~v~~~p~~~~~~~~l  228 (302)
                      .++++.|+|++              +.||+|..||.|.+||..+.... ..+..-.+|..  .|+||+||+|+    ++|
T Consensus       319 ~~tsC~~nrdg--------------~~iAagc~DGSIQ~W~~~~~~v~-p~~~vk~AH~~g~~Itsi~FS~dg----~~L  379 (641)
T KOG0772|consen  319 PVTSCAWNRDG--------------KLIAAGCLDGSIQIWDKGSRTVR-PVMKVKDAHLPGQDITSISFSYDG----NYL  379 (641)
T ss_pred             CceeeecCCCc--------------chhhhcccCCceeeeecCCcccc-cceEeeeccCCCCceeEEEecccc----chh
Confidence            68999999974              78999999999999997543211 11222356876  89999999996    889


Q ss_pred             EEEecCCeEEEEEeccCCcceeeeeeccCCCcEEEEEEccCCCEEEEecC-----C--ceEEeee
Q 022111          229 ASASQDGTVVIWTCAKEGEQWEGRVLKDFKTPVWSVSWSLTGNLLAVADA-----N--NVTLWKE  286 (302)
Q Consensus       229 ~s~s~D~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~la~~~~-----d--~i~~w~~  286 (302)
                      +|-+.|.++++||++.-+.......-.....+-..+.|||+.++|++|.+     .  ++.+++.
T Consensus       380 lSRg~D~tLKvWDLrq~kkpL~~~tgL~t~~~~tdc~FSPd~kli~TGtS~~~~~~~g~L~f~d~  444 (641)
T KOG0772|consen  380 LSRGFDDTLKVWDLRQFKKPLNVRTGLPTPFPGTDCCFSPDDKLILTGTSAPNGMTAGTLFFFDR  444 (641)
T ss_pred             hhccCCCceeeeeccccccchhhhcCCCccCCCCccccCCCceEEEecccccCCCCCceEEEEec
Confidence            99999999999999875433211110111234567999999999999844     1  3777774

>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]

Probab=99.95  E-value=3.7e-25  Score=180.51  Aligned_cols=251  Identities=17%  Similarity=0.249  Sum_probs=186.5

Q ss_pred             CcccccccccceeEEEEccCCCEEEEeeCCCcEEEEeecCCCc-------------------------------------
Q 022111            3 AQKIETGHEDTVHDVAMDFYGKRLATASSDSSIKIIGLSNSAS-------------------------------------   45 (302)
Q Consensus         3 ~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~lw~~~~~~~-------------------------------------   45 (302)
                      .-+.+..-...|+++.|+.+|.+|++++.|.+++|||..++..                                     
T Consensus         6 ~ak~f~~~~~~i~sl~fs~~G~~litss~dDsl~LYd~~~g~~~~ti~skkyG~~~~~Fth~~~~~i~sStk~d~tIryL   85 (311)
T KOG1446|consen    6 PAKVFRETNGKINSLDFSDDGLLLITSSEDDSLRLYDSLSGKQVKTINSKKYGVDLACFTHHSNTVIHSSTKEDDTIRYL   85 (311)
T ss_pred             cccccccCCCceeEEEecCCCCEEEEecCCCeEEEEEcCCCceeeEeecccccccEEEEecCCceEEEccCCCCCceEEE
Confidence            3344555677899999999999999999999999999743211                                     


Q ss_pred             -----eEEEEecCcccCeEEEEeeCCCCCCEEEEEeCCCeEEEEEcCCCCceeEEEEecCCCCCeeEEEecCCCCCcEEE
Q 022111           46 -----QHLATLKGHRGPVWQVAWAHPKFGSILASCSYDGQVIIWKEGNQNDWTQAHTFNDHKSSVNSIAWAPHELGLSLA  120 (302)
Q Consensus        46 -----~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~h~~~i~~l~~~pd~~~~~l~  120 (302)
                           +.+..+.||...|..|+.+|-  ++.++|+|.|++|++||++..+.   ..-+  +...-..++|.|.  |.++|
T Consensus        86 sl~dNkylRYF~GH~~~V~sL~~sP~--~d~FlS~S~D~tvrLWDlR~~~c---qg~l--~~~~~pi~AfDp~--GLifA  156 (311)
T KOG1446|consen   86 SLHDNKYLRYFPGHKKRVNSLSVSPK--DDTFLSSSLDKTVRLWDLRVKKC---QGLL--NLSGRPIAAFDPE--GLIFA  156 (311)
T ss_pred             EeecCceEEEcCCCCceEEEEEecCC--CCeEEecccCCeEEeeEecCCCC---ceEE--ecCCCcceeECCC--CcEEE
Confidence                 335678899999999999864  57899999999999999986532   2111  2333456788887  88999


Q ss_pred             EEecCCcEEEEEecCC--CCeeeeeecccCCCCeEEEEeCCCCCCCceeecccCCCceeEEEeeCCCcEEEEEEecCccc
Q 022111          121 CGSSDGNISVFTATAD--GGWDTTRIDQAHPVGVTSVSWAPAMAPGALVGLGLLDPVQKLASCGCDNTVKVWKMYNGIWK  198 (302)
Q Consensus       121 sg~~d~~v~~~~~~~~--~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~D~~v~iwd~~~~~~~  198 (302)
                      .+.....|++||++.-  +++....+...-....+.+.|+|+              |+.|+-+...+.+++.|.-+|.  
T Consensus       157 ~~~~~~~IkLyD~Rs~dkgPF~tf~i~~~~~~ew~~l~FS~d--------------GK~iLlsT~~s~~~~lDAf~G~--  220 (311)
T KOG1446|consen  157 LANGSELIKLYDLRSFDKGPFTTFSITDNDEAEWTDLEFSPD--------------GKSILLSTNASFIYLLDAFDGT--  220 (311)
T ss_pred             EecCCCeEEEEEecccCCCCceeEccCCCCccceeeeEEcCC--------------CCEEEEEeCCCcEEEEEccCCc--
Confidence            9988889999999853  344444433333456788899886              4888888889999999998874  


Q ss_pred             cccccccccCCCce---eEEEeeCCCCCCccEEEEEecCCeEEEEEeccCCcceeeeeeccCCCcEEEEEEccCCCEEEE
Q 022111          199 MDCFPALQMHSDWV---RSVAWAPNLGLPKSTIASASQDGTVVIWTCAKEGEQWEGRVLKDFKTPVWSVSWSLTGNLLAV  275 (302)
Q Consensus       199 ~~~~~~~~~h~~~v---~~v~~~p~~~~~~~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~la~  275 (302)
                        ...++.++...-   .+.+|+||+    ++|++|+.||+|.+|++++...  ..........++..+.|+|.-.++|+
T Consensus       221 --~~~tfs~~~~~~~~~~~a~ftPds----~Fvl~gs~dg~i~vw~~~tg~~--v~~~~~~~~~~~~~~~fnP~~~mf~s  292 (311)
T KOG1446|consen  221 --VKSTFSGYPNAGNLPLSATFTPDS----KFVLSGSDDGTIHVWNLETGKK--VAVLRGPNGGPVSCVRFNPRYAMFVS  292 (311)
T ss_pred             --EeeeEeeccCCCCcceeEEECCCC----cEEEEecCCCcEEEEEcCCCcE--eeEecCCCCCCccccccCCceeeeee
Confidence              345555554332   577899996    8899999999999999976432  12222225678899999998878777


Q ss_pred             ecCCceEEeeec
Q 022111          276 ADANNVTLWKEA  287 (302)
Q Consensus       276 ~~~d~i~~w~~~  287 (302)
                      |+ ..+.+|-..
T Consensus       293 a~-s~l~fw~p~  303 (311)
T KOG1446|consen  293 AS-SNLVFWLPD  303 (311)
T ss_pred             cC-ceEEEEecc
Confidence            74 368888543

>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]

Probab=99.95  E-value=4.3e-26  Score=207.61  Aligned_cols=236  Identities=24%  Similarity=0.356  Sum_probs=191.7

Q ss_pred             ccccccceeEEEEccCCCEEEEeeCCCcEEEEeecCCCceEEEEecCcccCeEEEEeeCCCCCCEEEEEeCCCeEEEEEc
Q 022111            7 ETGHEDTVHDVAMDFYGKRLATASSDSSIKIIGLSNSASQHLATLKGHRGPVWQVAWAHPKFGSILASCSYDGQVIIWKE   86 (302)
Q Consensus         7 ~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~s~D~~i~iwd~   86 (302)
                      +.||.+.|.++.|..-+.+|++|+.|+++++||...  +++..++.+|...|.++...    +.++++||.|.+|++|++
T Consensus       245 l~GH~g~V~~l~~~~~~~~lvsgS~D~t~rvWd~~s--g~C~~~l~gh~stv~~~~~~----~~~~~sgs~D~tVkVW~v  318 (537)
T KOG0274|consen  245 LVGHFGGVWGLAFPSGGDKLVSGSTDKTERVWDCST--GECTHSLQGHTSSVRCLTID----PFLLVSGSRDNTVKVWDV  318 (537)
T ss_pred             ccCCCCCceeEEEecCCCEEEEEecCCcEEeEecCC--CcEEEEecCCCceEEEEEcc----CceEeeccCCceEEEEec
Confidence            669999999999987678999999999999999754  56788899999999999763    467889999999999999


Q ss_pred             CCCCceeEEEEecCCCCCeeEEEecCCCCCcEEEEEecCCcEEEEEecCCCCeeeeeecccCCCCeEEEEeCCCCCCCce
Q 022111           87 GNQNDWTQAHTFNDHKSSVNSIAWAPHELGLSLACGSSDGNISVFTATADGGWDTTRIDQAHPVGVTSVSWAPAMAPGAL  166 (302)
Q Consensus        87 ~~~~~~~~~~~~~~h~~~i~~l~~~pd~~~~~l~sg~~d~~v~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~  166 (302)
                      +++   ..++.+.+|.++|+++..+    +.++++|+.|++|++|+......  +..+ .+|...|.++.+.+       
T Consensus       319 ~n~---~~l~l~~~h~~~V~~v~~~----~~~lvsgs~d~~v~VW~~~~~~c--l~sl-~gH~~~V~sl~~~~-------  381 (537)
T KOG0274|consen  319 TNG---ACLNLLRGHTGPVNCVQLD----EPLLVSGSYDGTVKVWDPRTGKC--LKSL-SGHTGRVYSLIVDS-------  381 (537)
T ss_pred             cCc---ceEEEeccccccEEEEEec----CCEEEEEecCceEEEEEhhhcee--eeee-cCCcceEEEEEecC-------
Confidence            865   3677888899999999997    34899999999999999984422  2344 47999999987653       


Q ss_pred             eecccCCCceeEEEeeCCCcEEEEEEecCccccccccccccCCCceeEEEeeCCCCCCccEEEEEecCCeEEEEEeccCC
Q 022111          167 VGLGLLDPVQKLASCGCDNTVKVWKMYNGIWKMDCFPALQMHSDWVRSVAWAPNLGLPKSTIASASQDGTVVIWTCAKEG  246 (302)
Q Consensus       167 ~~~~~~~~~~~l~s~~~D~~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~l~s~s~D~~i~iwd~~~~~  246 (302)
                              ...+++|+.|++|++||+.+..   +|+.++.+|.+.|.++.+.      ++.|++++.|++|++||.....
T Consensus       382 --------~~~~~Sgs~D~~IkvWdl~~~~---~c~~tl~~h~~~v~~l~~~------~~~Lvs~~aD~~Ik~WD~~~~~  444 (537)
T KOG0274|consen  382 --------ENRLLSGSLDTTIKVWDLRTKR---KCIHTLQGHTSLVSSLLLR------DNFLVSSSADGTIKLWDAEEGE  444 (537)
T ss_pred             --------cceEEeeeeccceEeecCCchh---hhhhhhcCCcccccccccc------cceeEeccccccEEEeecccCc
Confidence                    1579999999999999998753   6888999999999887664      3679999999999999987643


Q ss_pred             cceeeeeecc-CCCcEEEEEEccCCCEEEEecCC-ceEEeeec
Q 022111          247 EQWEGRVLKD-FKTPVWSVSWSLTGNLLAVADAN-NVTLWKEA  287 (302)
Q Consensus       247 ~~~~~~~~~~-~~~~v~~~~~spdg~~la~~~~d-~i~~w~~~  287 (302)
                      .   ...+.+ +...|.++++.  ...+++++.+ .+++|+..
T Consensus       445 ~---~~~~~~~~~~~v~~l~~~--~~~il~s~~~~~~~l~dl~  482 (537)
T KOG0274|consen  445 C---LRTLEGRHVGGVSALALG--KEEILCSSDDGSVKLWDLR  482 (537)
T ss_pred             e---eeeeccCCcccEEEeecC--cceEEEEecCCeeEEEecc
Confidence            2   223334 45678888876  3556666666 79999874

>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]

Probab=99.95  E-value=6.1e-26  Score=206.66  Aligned_cols=242  Identities=26%  Similarity=0.381  Sum_probs=192.6

Q ss_pred             cccceeEEEEccCCCEEEEeeCCCcEEEEeecCCCceEEEE-ecCcccCeEEEEeeCCCCCCEEEEEeCCCeEEEEEcCC
Q 022111           10 HEDTVHDVAMDFYGKRLATASSDSSIKIIGLSNSASQHLAT-LKGHRGPVWQVAWAHPKFGSILASCSYDGQVIIWKEGN   88 (302)
Q Consensus        10 h~~~v~~~~~s~~~~~l~s~~~d~~v~lw~~~~~~~~~~~~-~~~h~~~v~~v~~~~~~~~~~l~s~s~D~~i~iwd~~~   88 (302)
                      |...+.+..|.  ..++.+++.|.++++|+...  ...+.. +.||.+.|++++|..  .+.+|++|+.|+++++||..+
T Consensus       207 ~~~~~~~~q~~--~~~~~~~s~~~tl~~~~~~~--~~~i~~~l~GH~g~V~~l~~~~--~~~~lvsgS~D~t~rvWd~~s  280 (537)
T KOG0274|consen  207 DDHVVLCLQLH--DGFFKSGSDDSTLHLWDLNN--GYLILTRLVGHFGGVWGLAFPS--GGDKLVSGSTDKTERVWDCST  280 (537)
T ss_pred             Ccchhhhheee--cCeEEecCCCceeEEeeccc--ceEEEeeccCCCCCceeEEEec--CCCEEEEEecCCcEEeEecCC
Confidence            34456666666  55888999999999999754  344555 999999999999963  468999999999999999877


Q ss_pred             CCceeEEEEecCCCCCeeEEEecCCCCCcEEEEEecCCcEEEEEecCCCCeeeeeecccCCCCeEEEEeCCCCCCCceee
Q 022111           89 QNDWTQAHTFNDHKSSVNSIAWAPHELGLSLACGSSDGNISVFTATADGGWDTTRIDQAHPVGVTSVSWAPAMAPGALVG  168 (302)
Q Consensus        89 ~~~~~~~~~~~~h~~~i~~l~~~pd~~~~~l~sg~~d~~v~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~  168 (302)
                      +   .+.+.+.+|...|.++...+.    .+++|+.|.+|++|++.....  +..+. +|..+|.++..+          
T Consensus       281 g---~C~~~l~gh~stv~~~~~~~~----~~~sgs~D~tVkVW~v~n~~~--l~l~~-~h~~~V~~v~~~----------  340 (537)
T KOG0274|consen  281 G---ECTHSLQGHTSSVRCLTIDPF----LLVSGSRDNTVKVWDVTNGAC--LNLLR-GHTGPVNCVQLD----------  340 (537)
T ss_pred             C---cEEEEecCCCceEEEEEccCc----eEeeccCCceEEEEeccCcce--EEEec-cccccEEEEEec----------
Confidence            6   488999999999999988653    788999999999999975432  23333 599999999875          


Q ss_pred             cccCCCceeEEEeeCCCcEEEEEEecCccccccccccccCCCceeEEEeeCCCCCCccEEEEEecCCeEEEEEeccCCcc
Q 022111          169 LGLLDPVQKLASCGCDNTVKVWKMYNGIWKMDCFPALQMHSDWVRSVAWAPNLGLPKSTIASASQDGTVVIWTCAKEGEQ  248 (302)
Q Consensus       169 ~~~~~~~~~l~s~~~D~~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~l~s~s~D~~i~iwd~~~~~~~  248 (302)
                            +..+++|+.|++|++||+..+    +|+.++.||..+|.++.+.+.     ..+++|+.|++|++||++...  
T Consensus       341 ------~~~lvsgs~d~~v~VW~~~~~----~cl~sl~gH~~~V~sl~~~~~-----~~~~Sgs~D~~IkvWdl~~~~--  403 (537)
T KOG0274|consen  341 ------EPLLVSGSYDGTVKVWDPRTG----KCLKSLSGHTGRVYSLIVDSE-----NRLLSGSLDTTIKVWDLRTKR--  403 (537)
T ss_pred             ------CCEEEEEecCceEEEEEhhhc----eeeeeecCCcceEEEEEecCc-----ceEEeeeeccceEeecCCchh--
Confidence                  368999999999999999855    789999999999999988652     569999999999999998641  


Q ss_pred             eeeeeeccCCCcEEEEEEccCCCEEEEecCC-ceEEeeecCCceEEEee
Q 022111          249 WEGRVLKDFKTPVWSVSWSLTGNLLAVADAN-NVTLWKEAVDGEWQQVS  296 (302)
Q Consensus       249 ~~~~~~~~~~~~v~~~~~spdg~~la~~~~d-~i~~w~~~~~~~~~~~~  296 (302)
                      .....+.+|.+-+.++.+  .+++|++++.| .|++||..+.+..+-..
T Consensus       404 ~c~~tl~~h~~~v~~l~~--~~~~Lvs~~aD~~Ik~WD~~~~~~~~~~~  450 (537)
T KOG0274|consen  404 KCIHTLQGHTSLVSSLLL--RDNFLVSSSADGTIKLWDAEEGECLRTLE  450 (537)
T ss_pred             hhhhhhcCCccccccccc--ccceeEeccccccEEEeecccCceeeeec
Confidence            112334566666765554  67899999988 69999987665554443

>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.95  E-value=6.7e-27  Score=206.12  Aligned_cols=249  Identities=20%  Similarity=0.267  Sum_probs=189.1

Q ss_pred             cccccee---EEEEc-cCCCEEEEeeCCCcEEEEeecCCCc----eEEEEecCcccCeEEEEeeCCCCCCEEEEEeCCCe
Q 022111            9 GHEDTVH---DVAMD-FYGKRLATASSDSSIKIIGLSNSAS----QHLATLKGHRGPVWQVAWAHPKFGSILASCSYDGQ   80 (302)
Q Consensus         9 ~h~~~v~---~~~~s-~~~~~l~s~~~d~~v~lw~~~~~~~----~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~s~D~~   80 (302)
                      .|...|.   .+..+ |.+++|+|||.||.|++|++.....    +.+.++..|++-|..+.....  ++.|+|||.|-+
T Consensus        19 qn~~~v~~~~~Lq~da~~~ryLfTgGRDg~i~~W~~~~d~~~~s~~~~asme~HsDWVNDiiL~~~--~~tlIS~SsDtT   96 (735)
T KOG0308|consen   19 QNRNGVNITKALQLDAPNGRYLFTGGRDGIIRLWSVTQDSNEPSTPYIASMEHHSDWVNDIILCGN--GKTLISASSDTT   96 (735)
T ss_pred             hccccccchhhccccCCCCceEEecCCCceEEEeccccccCCcccchhhhhhhhHhHHhhHHhhcC--CCceEEecCCce
Confidence            3444554   34444 4467899999999999999854332    236778889999999887653  788999999999


Q ss_pred             EEEEEcCCCCceeEEEEecCCCCCeeEEEe-cCCCCCcEEEEEecCCcEEEEEecCCCC-----ee---eeeecccCCCC
Q 022111           81 VIIWKEGNQNDWTQAHTFNDHKSSVNSIAW-APHELGLSLACGSSDGNISVFTATADGG-----WD---TTRIDQAHPVG  151 (302)
Q Consensus        81 i~iwd~~~~~~~~~~~~~~~h~~~i~~l~~-~pd~~~~~l~sg~~d~~v~~~~~~~~~~-----~~---~~~~~~~h~~~  151 (302)
                      |++|+....+ ..++.++..|.+.|.|+++ -++  ...+|+|+.|+.|.+||+.....     ..   ...+..++...
T Consensus        97 VK~W~~~~~~-~~c~stir~H~DYVkcla~~ak~--~~lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~~sl~sG~k~s  173 (735)
T KOG0308|consen   97 VKVWNAHKDN-TFCMSTIRTHKDYVKCLAYIAKN--NELVASGGLDRKIFLWDINTGTATLVASFNNVTVNSLGSGPKDS  173 (735)
T ss_pred             EEEeecccCc-chhHhhhhcccchheeeeecccC--ceeEEecCCCccEEEEEccCcchhhhhhccccccccCCCCCccc
Confidence            9999987655 2467788999999999999 454  45899999999999999985422     00   01111234445


Q ss_pred             eEEEEeCCCCCCCceeecccCCCceeEEEeeCCCcEEEEEEecCccccccccccccCCCceeEEEeeCCCCCCccEEEEE
Q 022111          152 VTSVSWAPAMAPGALVGLGLLDPVQKLASCGCDNTVKVWKMYNGIWKMDCFPALQMHSDWVRSVAWAPNLGLPKSTIASA  231 (302)
Q Consensus       152 v~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~D~~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~l~s~  231 (302)
                      |.+++-++              .+..|++|+..+-+++||.+++...    -.+.||++.|+++-.++||    +.++|+
T Consensus       174 iYSLA~N~--------------t~t~ivsGgtek~lr~wDprt~~ki----mkLrGHTdNVr~ll~~dDG----t~~ls~  231 (735)
T KOG0308|consen  174 IYSLAMNQ--------------TGTIIVSGGTEKDLRLWDPRTCKKI----MKLRGHTDNVRVLLVNDDG----TRLLSA  231 (735)
T ss_pred             eeeeecCC--------------cceEEEecCcccceEEeccccccce----eeeeccccceEEEEEcCCC----CeEeec
Confidence            55555443              3578999999999999999987433    3467999999999999985    899999


Q ss_pred             ecCCeEEEEEeccCCcceeeeeeccCCCcEEEEEEccCCCEEEEecCC-ceEEeeec
Q 022111          232 SQDGTVVIWTCAKEGEQWEGRVLKDFKTPVWSVSWSLTGNLLAVADAN-NVTLWKEA  287 (302)
Q Consensus       232 s~D~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~la~~~~d-~i~~w~~~  287 (302)
                      |.||+||+||+....-   .....-|+..||++.-+|+=..+.+|++| .|..-++.
T Consensus       232 sSDgtIrlWdLgqQrC---l~T~~vH~e~VWaL~~~~sf~~vYsG~rd~~i~~Tdl~  285 (735)
T KOG0308|consen  232 SSDGTIRLWDLGQQRC---LATYIVHKEGVWALQSSPSFTHVYSGGRDGNIYRTDLR  285 (735)
T ss_pred             CCCceEEeeeccccce---eeeEEeccCceEEEeeCCCcceEEecCCCCcEEecccC
Confidence            9999999999975321   12234566779999999999999999998 57776653

>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.95  E-value=1.6e-26  Score=182.29  Aligned_cols=221  Identities=30%  Similarity=0.510  Sum_probs=178.0

Q ss_pred             ccccccccceeEEEEcc--CCCEEEEeeCCCcEEEEeecCCCceEEEEecCcccCeEEEEeeCCCCCCEEEEEeCCCeEE
Q 022111            5 KIETGHEDTVHDVAMDF--YGKRLATASSDSSIKIIGLSNSASQHLATLKGHRGPVWQVAWAHPKFGSILASCSYDGQVI   82 (302)
Q Consensus         5 ~~~~~h~~~v~~~~~s~--~~~~l~s~~~d~~v~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~s~D~~i~   82 (302)
                      ..+.||+++|+.++|--  .|.+|||+++||+|.||..+++..........|++.|++|+|.|..-|-.||.++.||.|.
T Consensus        50 ~~L~Gh~GPVwqv~wahPk~G~iLAScsYDgkVIiWke~~g~w~k~~e~~~h~~SVNsV~wapheygl~LacasSDG~vs  129 (299)
T KOG1332|consen   50 AELTGHSGPVWKVAWAHPKFGTILASCSYDGKVIIWKEENGRWTKAYEHAAHSASVNSVAWAPHEYGLLLACASSDGKVS  129 (299)
T ss_pred             eEecCCCCCeeEEeecccccCcEeeEeecCceEEEEecCCCchhhhhhhhhhcccceeecccccccceEEEEeeCCCcEE
Confidence            34679999999999964  7999999999999999998776555555677899999999998765678899999999999


Q ss_pred             EEEcCCCCceeEEEEecCCCCCeeEEEecCCC-CC-----------cEEEEEecCCcEEEEEecCCCCeeeeeecccCCC
Q 022111           83 IWKEGNQNDWTQAHTFNDHKSSVNSIAWAPHE-LG-----------LSLACGSSDGNISVFTATADGGWDTTRIDQAHPV  150 (302)
Q Consensus        83 iwd~~~~~~~~~~~~~~~h~~~i~~l~~~pd~-~~-----------~~l~sg~~d~~v~~~~~~~~~~~~~~~~~~~h~~  150 (302)
                      |.+.++.+.+...+....|.--|++++|.|-. +|           ++|++|+.|+.|+||+...+ .|.......+|..
T Consensus       130 vl~~~~~g~w~t~ki~~aH~~GvnsVswapa~~~g~~~~~~~~~~~krlvSgGcDn~VkiW~~~~~-~w~~e~~l~~H~d  208 (299)
T KOG1332|consen  130 VLTYDSSGGWTTSKIVFAHEIGVNSVSWAPASAPGSLVDQGPAAKVKRLVSGGCDNLVKIWKFDSD-SWKLERTLEGHKD  208 (299)
T ss_pred             EEEEcCCCCccchhhhhccccccceeeecCcCCCccccccCcccccceeeccCCccceeeeecCCc-chhhhhhhhhcch
Confidence            99987665555555566799999999998852 12           56999999999999998754 5555443458999


Q ss_pred             CeEEEEeCCCCCCCceeecccCCCceeEEEeeCCCcEEEEEEec--CccccccccccccCCCceeEEEeeCCCCCCccEE
Q 022111          151 GVTSVSWAPAMAPGALVGLGLLDPVQKLASCGCDNTVKVWKMYN--GIWKMDCFPALQMHSDWVRSVAWAPNLGLPKSTI  228 (302)
Q Consensus       151 ~v~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~D~~v~iwd~~~--~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~l  228 (302)
                      -|+.++|.|....          +...||||++||++.||-...  ..|+.+.+..   ....+..++||+.+    +.|
T Consensus       209 wVRDVAwaP~~gl----------~~s~iAS~SqDg~viIwt~~~e~e~wk~tll~~---f~~~~w~vSWS~sG----n~L  271 (299)
T KOG1332|consen  209 WVRDVAWAPSVGL----------PKSTIASCSQDGTVIIWTKDEEYEPWKKTLLEE---FPDVVWRVSWSLSG----NIL  271 (299)
T ss_pred             hhhhhhhccccCC----------CceeeEEecCCCcEEEEEecCccCccccccccc---CCcceEEEEEeccc----cEE
Confidence            9999999996421          236799999999999998763  2344444433   46789999999985    889


Q ss_pred             EEEecCCeEEEEEec
Q 022111          229 ASASQDGTVVIWTCA  243 (302)
Q Consensus       229 ~s~s~D~~i~iwd~~  243 (302)
                      +.++.|..+.+|.-.
T Consensus       272 aVs~GdNkvtlwke~  286 (299)
T KOG1332|consen  272 AVSGGDNKVTLWKEN  286 (299)
T ss_pred             EEecCCcEEEEEEeC
Confidence            999999999999754

>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]

Probab=99.95  E-value=3.4e-26  Score=202.97  Aligned_cols=238  Identities=24%  Similarity=0.353  Sum_probs=190.8

Q ss_pred             ccccccceeEEEEccCCCEEEEeeCCCcEEEEeecCCCceEEEEecCcccCeEE-EEeeCCCCCCEEEEEeCCCeEEEEE
Q 022111            7 ETGHEDTVHDVAMDFYGKRLATASSDSSIKIIGLSNSASQHLATLKGHRGPVWQ-VAWAHPKFGSILASCSYDGQVIIWK   85 (302)
Q Consensus         7 ~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~lw~~~~~~~~~~~~~~~h~~~v~~-v~~~~~~~~~~l~s~s~D~~i~iwd   85 (302)
                      ..||+..|..+++.+ +..++++|.|+++++|+-..+.......+.+|.+.|.. ++|.+ .+.-.|++|+.|..+.+|.
T Consensus        10 l~gH~~DVr~v~~~~-~~~i~s~sRd~t~~vw~~~~~~~l~~~~~~~~~g~i~~~i~y~e-~~~~~l~~g~~D~~i~v~~   87 (745)
T KOG0301|consen   10 LEGHKSDVRAVAVTD-GVCIISGSRDGTVKVWAKKGKQYLETHAFEGPKGFIANSICYAE-SDKGRLVVGGMDTTIIVFK   87 (745)
T ss_pred             eccCccchheeEecC-CeEEeecCCCCceeeeeccCcccccceecccCcceeeccceecc-ccCcceEeecccceEEEEe
Confidence            569999999888765 55899999999999998755443344567788888876 89865 3345689999999999998


Q ss_pred             cCCCCceeEEEEecCCCCCeeEEEecCCCCCcEEEEEecCCcEEEEEecCCCCeeeeeecccCCCCeEEEEeCCCCCCCc
Q 022111           86 EGNQNDWTQAHTFNDHKSSVNSIAWAPHELGLSLACGSSDGNISVFTATADGGWDTTRIDQAHPVGVTSVSWAPAMAPGA  165 (302)
Q Consensus        86 ~~~~~~~~~~~~~~~h~~~i~~l~~~pd~~~~~l~sg~~d~~v~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~  165 (302)
                      ....   .+..++.+|+..|.+++...+  +. +++||+|.++++|....-.    .. .++|+..|..+..-|.     
T Consensus        88 ~~~~---~P~~~LkgH~snVC~ls~~~~--~~-~iSgSWD~TakvW~~~~l~----~~-l~gH~asVWAv~~l~e-----  151 (745)
T KOG0301|consen   88 LSQA---EPLYTLKGHKSNVCSLSIGED--GT-LISGSWDSTAKVWRIGELV----YS-LQGHTASVWAVASLPE-----  151 (745)
T ss_pred             cCCC---CchhhhhccccceeeeecCCc--Cc-eEecccccceEEecchhhh----cc-cCCcchheeeeeecCC-----
Confidence            7554   478899999999999987654  43 9999999999999765321    12 3489999988876653     


Q ss_pred             eeecccCCCceeEEEeeCCCcEEEEEEecCccccccccccccCCCceeEEEeeCCCCCCccEEEEEecCCeEEEEEeccC
Q 022111          166 LVGLGLLDPVQKLASCGCDNTVKVWKMYNGIWKMDCFPALQMHSDWVRSVAWAPNLGLPKSTIASASQDGTVVIWTCAKE  245 (302)
Q Consensus       166 ~~~~~~~~~~~~l~s~~~D~~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~l~s~s~D~~i~iwd~~~~  245 (302)
                                ..++|||.|++||+|.-.      +++++|.||.+.|+.+++-|+     ..|+|++.||.||.|++..+
T Consensus       152 ----------~~~vTgsaDKtIklWk~~------~~l~tf~gHtD~VRgL~vl~~-----~~flScsNDg~Ir~w~~~ge  210 (745)
T KOG0301|consen  152 ----------NTYVTGSADKTIKLWKGG------TLLKTFSGHTDCVRGLAVLDD-----SHFLSCSNDGSIRLWDLDGE  210 (745)
T ss_pred             ----------CcEEeccCcceeeeccCC------chhhhhccchhheeeeEEecC-----CCeEeecCCceEEEEeccCc
Confidence                      479999999999999763      457889999999999999887     45999999999999999542


Q ss_pred             CcceeeeeeccCCCcEEEEEEccCCCEEEEecCC-ceEEeeec
Q 022111          246 GEQWEGRVLKDFKTPVWSVSWSLTGNLLAVADAN-NVTLWKEA  287 (302)
Q Consensus       246 ~~~~~~~~~~~~~~~v~~~~~spdg~~la~~~~d-~i~~w~~~  287 (302)
                         . .....+|..-+++++..+++..+++++.| ++++|+..
T Consensus       211 ---~-l~~~~ghtn~vYsis~~~~~~~Ivs~gEDrtlriW~~~  249 (745)
T KOG0301|consen  211 ---V-LLEMHGHTNFVYSISMALSDGLIVSTGEDRTLRIWKKD  249 (745)
T ss_pred             ---e-eeeeeccceEEEEEEecCCCCeEEEecCCceEEEeecC
Confidence               1 12346778889999988888888899899 89999965

>KOG0302 consensus Ribosome Assembly protein [General function prediction only]

Probab=99.95  E-value=1.8e-26  Score=191.83  Aligned_cols=216  Identities=25%  Similarity=0.512  Sum_probs=166.7

Q ss_pred             cCcccCeEEEEeeCCCCCCEEEEEeCCCeEEEEEcCCCC-------------ceeEEEEecCCCCCeeEEEecCCCCCcE
Q 022111           52 KGHRGPVWQVAWAHPKFGSILASCSYDGQVIIWKEGNQN-------------DWTQAHTFNDHKSSVNSIAWAPHELGLS  118 (302)
Q Consensus        52 ~~h~~~v~~v~~~~~~~~~~l~s~s~D~~i~iwd~~~~~-------------~~~~~~~~~~h~~~i~~l~~~pd~~~~~  118 (302)
                      ..|.+.+..++..+-....++|+-+..|.|.||++....             ...++.++.+|...-..|+|||-..| .
T Consensus       148 i~h~g~~NRvr~~~~~~~~~~aswse~G~V~Vw~l~~~l~~l~~~~~~~~~s~~~Pl~t~~ghk~EGy~LdWSp~~~g-~  226 (440)
T KOG0302|consen  148 IPHYGGINRVRVSRLGNEVLCASWSENGRVQVWDLAPHLNALSEPGLEVKDSEFRPLFTFNGHKGEGYGLDWSPIKTG-R  226 (440)
T ss_pred             cccccccceeeecccCCcceeeeecccCcEEEEEchhhhhhhcCccccccccccCceEEecccCccceeeeccccccc-c
Confidence            357777777776543235688889999999999985321             13567889999999999999996544 5


Q ss_pred             EEEEecCCcEEEEEecCCCCeee--eeecccCCCCeEEEEeCCCCCCCceeecccCCCceeEEEeeCCCcEEEEEEecCc
Q 022111          119 LACGSSDGNISVFTATADGGWDT--TRIDQAHPVGVTSVSWAPAMAPGALVGLGLLDPVQKLASCGCDNTVKVWKMYNGI  196 (302)
Q Consensus       119 l~sg~~d~~v~~~~~~~~~~~~~--~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~D~~v~iwd~~~~~  196 (302)
                      |++|..-+.|++|...+ +.|..  ..+. +|+..|..++|+|..             ...|+|||.|++|+|||++.+.
T Consensus       227 LlsGDc~~~I~lw~~~~-g~W~vd~~Pf~-gH~~SVEDLqWSptE-------------~~vfaScS~DgsIrIWDiRs~~  291 (440)
T KOG0302|consen  227 LLSGDCVKGIHLWEPST-GSWKVDQRPFT-GHTKSVEDLQWSPTE-------------DGVFASCSCDGSIRIWDIRSGP  291 (440)
T ss_pred             cccCccccceEeeeecc-CceeecCcccc-ccccchhhhccCCcc-------------CceEEeeecCceEEEEEecCCC
Confidence            89999999999998876 56654  3343 699999999999975             3789999999999999999874


Q ss_pred             cccccccccccCCCceeEEEeeCCCCCCccEEEEEecCCeEEEEEeccCCcceeeeeeccCCCcEEEEEEccC-CCEEEE
Q 022111          197 WKMDCFPALQMHSDWVRSVAWAPNLGLPKSTIASASQDGTVVIWTCAKEGEQWEGRVLKDFKTPVWSVSWSLT-GNLLAV  275 (302)
Q Consensus       197 ~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~spd-g~~la~  275 (302)
                      .+ .++. .+.|.+-|+-|+|+.+.    .+||+|++||+++|||+|.-+........+-|+.+|++|+|+|. ...|++
T Consensus       292 ~~-~~~~-~kAh~sDVNVISWnr~~----~lLasG~DdGt~~iwDLR~~~~~~pVA~fk~Hk~pItsieW~p~e~s~iaa  365 (440)
T KOG0302|consen  292 KK-AAVS-TKAHNSDVNVISWNRRE----PLLASGGDDGTLSIWDLRQFKSGQPVATFKYHKAPITSIEWHPHEDSVIAA  365 (440)
T ss_pred             cc-ceeE-eeccCCceeeEEccCCc----ceeeecCCCceEEEEEhhhccCCCcceeEEeccCCeeEEEeccccCceEEe
Confidence            33 2332 37899999999999774    48999999999999999864321112234678899999999994 355666


Q ss_pred             ecCC-ceEEeeecCC
Q 022111          276 ADAN-NVTLWKEAVD  289 (302)
Q Consensus       276 ~~~d-~i~~w~~~~~  289 (302)
                      ++.| .|.|||++.+
T Consensus       366 sg~D~QitiWDlsvE  380 (440)
T KOG0302|consen  366 SGEDNQITIWDLSVE  380 (440)
T ss_pred             ccCCCcEEEEEeecc
Confidence            6566 7999998653

>KOG0641 consensus WD40 repeat protein [General function prediction only]

Probab=99.95  E-value=9.4e-25  Score=170.70  Aligned_cols=250  Identities=22%  Similarity=0.334  Sum_probs=187.7

Q ss_pred             ccccccceeEEEEccCCCEEEEeeCCCcEEEEeecCCCce---EEEEecCcccCeEEEEeeCC--CCCCEEEEEeC-CCe
Q 022111            7 ETGHEDTVHDVAMDFYGKRLATASSDSSIKIIGLSNSASQ---HLATLKGHRGPVWQVAWAHP--KFGSILASCSY-DGQ   80 (302)
Q Consensus         7 ~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~lw~~~~~~~~---~~~~~~~h~~~v~~v~~~~~--~~~~~l~s~s~-D~~   80 (302)
                      ...|++.|++.+|+|+|+.+|+|+.|++|++.-+...+..   +-..+.-|.+.|+.++|-.+  ..+.+|++++. |..
T Consensus        85 ~khhkgsiyc~~ws~~geliatgsndk~ik~l~fn~dt~~~~g~dle~nmhdgtirdl~fld~~~s~~~il~s~gagdc~  164 (350)
T KOG0641|consen   85 NKHHKGSIYCTAWSPCGELIATGSNDKTIKVLPFNADTCNATGHDLEFNMHDGTIRDLAFLDDPESGGAILASAGAGDCK  164 (350)
T ss_pred             ccccCccEEEEEecCccCeEEecCCCceEEEEecccccccccCcceeeeecCCceeeeEEecCCCcCceEEEecCCCcce
Confidence            3468899999999999999999999999999877543321   22345669999999999643  23568888764 544


Q ss_pred             EEEEEcCCCCceeEEEEecCCCCCeeEE-EecCCCCCcEEEEEecCCcEEEEEecCCCCeeeeeecccC-----CCCeEE
Q 022111           81 VIIWKEGNQNDWTQAHTFNDHKSSVNSI-AWAPHELGLSLACGSSDGNISVFTATADGGWDTTRIDQAH-----PVGVTS  154 (302)
Q Consensus        81 i~iwd~~~~~~~~~~~~~~~h~~~i~~l-~~~pd~~~~~l~sg~~d~~v~~~~~~~~~~~~~~~~~~~h-----~~~v~~  154 (302)
                      |.+=|...+   ...+.+.+|.+-|.++ .|+    +.++++|+.|++|++||++-........-. -|     ...|.+
T Consensus       165 iy~tdc~~g---~~~~a~sghtghilalyswn----~~m~~sgsqdktirfwdlrv~~~v~~l~~~-~~~~glessavaa  236 (350)
T KOG0641|consen  165 IYITDCGRG---QGFHALSGHTGHILALYSWN----GAMFASGSQDKTIRFWDLRVNSCVNTLDND-FHDGGLESSAVAA  236 (350)
T ss_pred             EEEeecCCC---CcceeecCCcccEEEEEEec----CcEEEccCCCceEEEEeeeccceeeeccCc-ccCCCcccceeEE
Confidence            544454443   4677889999999887 454    669999999999999999854333221110 11     234667


Q ss_pred             EEeCCCCCCCceeecccCCCceeEEEeeCCCcEEEEEEecCccccccccccccCCCceeEEEeeCCCCCCccEEEEEecC
Q 022111          155 VSWAPAMAPGALVGLGLLDPVQKLASCGCDNTVKVWKMYNGIWKMDCFPALQMHSDWVRSVAWAPNLGLPKSTIASASQD  234 (302)
Q Consensus       155 ~~~~~~~~~~~~~~~~~~~~~~~l~s~~~D~~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~l~s~s~D  234 (302)
                      ++..|.              +++|++|-.|...-+||++.+    ..++.+..|...|+|+.|+|..    .+++++|.|
T Consensus       237 v~vdps--------------grll~sg~~dssc~lydirg~----r~iq~f~phsadir~vrfsp~a----~yllt~syd  294 (350)
T KOG0641|consen  237 VAVDPS--------------GRLLASGHADSSCMLYDIRGG----RMIQRFHPHSADIRCVRFSPGA----HYLLTCSYD  294 (350)
T ss_pred             EEECCC--------------cceeeeccCCCceEEEEeeCC----ceeeeeCCCccceeEEEeCCCc----eEEEEeccc
Confidence            776665              589999999999999999987    4577888999999999999974    789999999


Q ss_pred             CeEEEEEeccCCc-ceeeeeeccCCCcEEEEEEccCCCEEEEecCC-ceEEeee
Q 022111          235 GTVVIWTCAKEGE-QWEGRVLKDFKTPVWSVSWSLTGNLLAVADAN-NVTLWKE  286 (302)
Q Consensus       235 ~~i~iwd~~~~~~-~~~~~~~~~~~~~v~~~~~spdg~~la~~~~d-~i~~w~~  286 (302)
                      -.|++=|++..-. +..-.+..+|+..+-.+.|.|+.--+++.+.| ++.+|..
T Consensus       295 ~~ikltdlqgdla~el~~~vv~ehkdk~i~~rwh~~d~sfisssadkt~tlwa~  348 (350)
T KOG0641|consen  295 MKIKLTDLQGDLAHELPIMVVAEHKDKAIQCRWHPQDFSFISSSADKTATLWAL  348 (350)
T ss_pred             ceEEEeecccchhhcCceEEEEeccCceEEEEecCccceeeeccCcceEEEecc
Confidence            9999999875211 11122347888999999999987555666666 8999964

>KOG0302 consensus Ribosome Assembly protein [General function prediction only]

Probab=99.95  E-value=6.9e-26  Score=188.41  Aligned_cols=257  Identities=23%  Similarity=0.406  Sum_probs=194.5

Q ss_pred             cccccceeEEEEccCC--CEEEEeeCCCcEEEEeecCC--------------CceEEEEecCcccCeEEEEeeCCCCCCE
Q 022111            8 TGHEDTVHDVAMDFYG--KRLATASSDSSIKIIGLSNS--------------ASQHLATLKGHRGPVWQVAWAHPKFGSI   71 (302)
Q Consensus         8 ~~h~~~v~~~~~s~~~--~~l~s~~~d~~v~lw~~~~~--------------~~~~~~~~~~h~~~v~~v~~~~~~~~~~   71 (302)
                      -+|.+.++.+..++.+  .+.|+-+..|.|+||++...              ..+++.++.+|.+.=++|+|||-..| .
T Consensus       148 i~h~g~~NRvr~~~~~~~~~~aswse~G~V~Vw~l~~~l~~l~~~~~~~~~s~~~Pl~t~~ghk~EGy~LdWSp~~~g-~  226 (440)
T KOG0302|consen  148 IPHYGGINRVRVSRLGNEVLCASWSENGRVQVWDLAPHLNALSEPGLEVKDSEFRPLFTFNGHKGEGYGLDWSPIKTG-R  226 (440)
T ss_pred             cccccccceeeecccCCcceeeeecccCcEEEEEchhhhhhhcCccccccccccCceEEecccCccceeeeccccccc-c
Confidence            3688888888877765  57777788899999998311              12467889999999999999985444 4


Q ss_pred             EEEEeCCCeEEEEEcCCCCceeEE-EEecCCCCCeeEEEecCCCCCcEEEEEecCCcEEEEEecCCCCeeeeeecccCCC
Q 022111           72 LASCSYDGQVIIWKEGNQNDWTQA-HTFNDHKSSVNSIAWAPHELGLSLACGSSDGNISVFTATADGGWDTTRIDQAHPV  150 (302)
Q Consensus        72 l~s~s~D~~i~iwd~~~~~~~~~~-~~~~~h~~~i~~l~~~pd~~~~~l~sg~~d~~v~~~~~~~~~~~~~~~~~~~h~~  150 (302)
                      |+||.--+.|++|...+ +.|.-- ..|.+|+..|-.|.|||.+. ..+++||.|++|+|||.+.......... .+|..
T Consensus       227 LlsGDc~~~I~lw~~~~-g~W~vd~~Pf~gH~~SVEDLqWSptE~-~vfaScS~DgsIrIWDiRs~~~~~~~~~-kAh~s  303 (440)
T KOG0302|consen  227 LLSGDCVKGIHLWEPST-GSWKVDQRPFTGHTKSVEDLQWSPTED-GVFASCSCDGSIRIWDIRSGPKKAAVST-KAHNS  303 (440)
T ss_pred             cccCccccceEeeeecc-CceeecCccccccccchhhhccCCccC-ceEEeeecCceEEEEEecCCCccceeEe-eccCC
Confidence            67888888999999877 455432 34778999999999999875 4799999999999999986532222222 48999


Q ss_pred             CeEEEEeCCCCCCCceeecccCCCceeEEEeeCCCcEEEEEEecCccccccccccccCCCceeEEEeeCCCCCCccEEEE
Q 022111          151 GVTSVSWAPAMAPGALVGLGLLDPVQKLASCGCDNTVKVWKMYNGIWKMDCFPALQMHSDWVRSVAWAPNLGLPKSTIAS  230 (302)
Q Consensus       151 ~v~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~D~~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~l~s  230 (302)
                      .|+.+.|+...              .+||+|+.||+++|||++.-+.. ..+..|+-|+.+|+||.|+|..   ...|++
T Consensus       304 DVNVISWnr~~--------------~lLasG~DdGt~~iwDLR~~~~~-~pVA~fk~Hk~pItsieW~p~e---~s~iaa  365 (440)
T KOG0302|consen  304 DVNVISWNRRE--------------PLLASGGDDGTLSIWDLRQFKSG-QPVATFKYHKAPITSIEWHPHE---DSVIAA  365 (440)
T ss_pred             ceeeEEccCCc--------------ceeeecCCCceEEEEEhhhccCC-CcceeEEeccCCeeEEEecccc---CceEEe
Confidence            99999998753              48999999999999999865322 4566788999999999999975   478999


Q ss_pred             EecCCeEEEEEeccCCcc-----e--------eeeeeccC--CCcEEEEEEccCC-CEEEEecCCceEEeee
Q 022111          231 ASQDGTVVIWTCAKEGEQ-----W--------EGRVLKDF--KTPVWSVSWSLTG-NLLAVADANNVTLWKE  286 (302)
Q Consensus       231 ~s~D~~i~iwd~~~~~~~-----~--------~~~~~~~~--~~~v~~~~~spdg-~~la~~~~d~i~~w~~  286 (302)
                      ++.|..|.|||+..+...     .        ...++.=|  ...+..+.|+++- -+|++.+.+++.+|+.
T Consensus       366 sg~D~QitiWDlsvE~D~ee~~~~a~~~L~dlPpQLLFVHqGQke~KevhWH~QiPG~lvsTa~dGfnVfkt  437 (440)
T KOG0302|consen  366 SGEDNQITIWDLSVEADEEEIDQEAAEGLQDLPPQLLFVHQGQKEVKEVHWHRQIPGLLVSTAIDGFNVFKT  437 (440)
T ss_pred             ccCCCcEEEEEeeccCChhhhccccccchhcCCceeEEEecchhHhhhheeccCCCCeEEEecccceeEEEe
Confidence            999999999999654220     0        01122112  2347789999853 4666777788888874

>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]

Probab=99.95  E-value=2.3e-25  Score=181.01  Aligned_cols=235  Identities=22%  Similarity=0.297  Sum_probs=172.5

Q ss_pred             ccccccccceeEEEEccCCCEEEEeeCCCcEEEEeecCCCceEEEEecCcccCeEEEEeeCCCCCCEEEEEeCCCeEEEE
Q 022111            5 KIETGHEDTVHDVAMDFYGKRLATASSDSSIKIIGLSNSASQHLATLKGHRGPVWQVAWAHPKFGSILASCSYDGQVIIW   84 (302)
Q Consensus         5 ~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~s~D~~i~iw   84 (302)
                      ++....++.|.++.|++.+..|++++.||++++|++...  .....+ .|++++.+.+|.+   ...+++|+-|+.|+.+
T Consensus         7 ~l~npP~d~IS~v~f~~~~~~LLvssWDgslrlYdv~~~--~l~~~~-~~~~plL~c~F~d---~~~~~~G~~dg~vr~~   80 (323)
T KOG1036|consen    7 ELENPPEDGISSVKFSPSSSDLLVSSWDGSLRLYDVPAN--SLKLKF-KHGAPLLDCAFAD---ESTIVTGGLDGQVRRY   80 (323)
T ss_pred             ccCCCChhceeeEEEcCcCCcEEEEeccCcEEEEeccch--hhhhhe-ecCCceeeeeccC---CceEEEeccCceEEEE
Confidence            444566889999999999889999999999999998653  222233 5899999999964   3578999999999999


Q ss_pred             EcCCCCceeEEEEecCCCCCeeEEEecCCCCCcEEEEEecCCcEEEEEecCCCCeeeeeecccCCCCeEEEEeCCCCCCC
Q 022111           85 KEGNQNDWTQAHTFNDHKSSVNSIAWAPHELGLSLACGSSDGNISVFTATADGGWDTTRIDQAHPVGVTSVSWAPAMAPG  164 (302)
Q Consensus        85 d~~~~~~~~~~~~~~~h~~~i~~l~~~pd~~~~~l~sg~~d~~v~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~  164 (302)
                      |++.++    ...+..|.++|.|+.+++-.+  .+++|++|++|++||.+....  .....  ...+|.++..+      
T Consensus        81 Dln~~~----~~~igth~~~i~ci~~~~~~~--~vIsgsWD~~ik~wD~R~~~~--~~~~d--~~kkVy~~~v~------  144 (323)
T KOG1036|consen   81 DLNTGN----EDQIGTHDEGIRCIEYSYEVG--CVISGSWDKTIKFWDPRNKVV--VGTFD--QGKKVYCMDVS------  144 (323)
T ss_pred             EecCCc----ceeeccCCCceEEEEeeccCC--eEEEcccCccEEEEecccccc--ccccc--cCceEEEEecc------
Confidence            998764    335667999999999997643  699999999999999874211  11111  12245554432      


Q ss_pred             ceeecccCCCceeEEEeeCCCcEEEEEEecCccc--------------------------------------------cc
Q 022111          165 ALVGLGLLDPVQKLASCGCDNTVKVWKMYNGIWK--------------------------------------------MD  200 (302)
Q Consensus       165 ~~~~~~~~~~~~~l~s~~~D~~v~iwd~~~~~~~--------------------------------------------~~  200 (302)
                                +..|+.|+.|+.+.+||+++....                                            ..
T Consensus       145 ----------g~~LvVg~~~r~v~iyDLRn~~~~~q~reS~lkyqtR~v~~~pn~eGy~~sSieGRVavE~~d~s~~~~s  214 (323)
T KOG1036|consen  145 ----------GNRLVVGTSDRKVLIYDLRNLDEPFQRRESSLKYQTRCVALVPNGEGYVVSSIEGRVAVEYFDDSEEAQS  214 (323)
T ss_pred             ----------CCEEEEeecCceEEEEEcccccchhhhccccceeEEEEEEEecCCCceEEEeecceEEEEccCCchHHhh
Confidence                      356777778888888887652100                                            00


Q ss_pred             cccccccCCC---------ceeEEEeeCCCCCCccEEEEEecCCeEEEEEeccCCcceeeeeeccCCCcEEEEEEccCCC
Q 022111          201 CFPALQMHSD---------WVRSVAWAPNLGLPKSTIASASQDGTVVIWTCAKEGEQWEGRVLKDFKTPVWSVSWSLTGN  271 (302)
Q Consensus       201 ~~~~~~~h~~---------~v~~v~~~p~~~~~~~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~spdg~  271 (302)
                      ....|+.|..         +|++|+|+|-.    .+||||+.||.|-+||+...++.   ..+..++..|.+++|+-||.
T Consensus       215 kkyaFkCHr~~~~~~~~~yPVNai~Fhp~~----~tfaTgGsDG~V~~Wd~~~rKrl---~q~~~~~~SI~slsfs~dG~  287 (323)
T KOG1036|consen  215 KKYAFKCHRLSEKDTEIIYPVNAIAFHPIH----GTFATGGSDGIVNIWDLFNRKRL---KQLAKYETSISSLSFSMDGS  287 (323)
T ss_pred             hceeEEeeecccCCceEEEEeceeEecccc----ceEEecCCCceEEEccCcchhhh---hhccCCCCceEEEEeccCCC
Confidence            1122444432         69999999973    78999999999999999764322   22356677799999999999


Q ss_pred             EEEEecC
Q 022111          272 LLAVADA  278 (302)
Q Consensus       272 ~la~~~~  278 (302)
                      .||+|++
T Consensus       288 ~LAia~s  294 (323)
T KOG1036|consen  288 LLAIASS  294 (323)
T ss_pred             eEEEEec
Confidence            9999965

>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]

Probab=99.94  E-value=4.3e-27  Score=197.52  Aligned_cols=264  Identities=24%  Similarity=0.314  Sum_probs=192.8

Q ss_pred             ccccccccceeEEEEccCCCEEEEeeCCCcEEEEeecCCCceEEEEecCcccCeEEEEeeCCCCCCEEEEEeCCCeEEEE
Q 022111            5 KIETGHEDTVHDVAMDFYGKRLATASSDSSIKIIGLSNSASQHLATLKGHRGPVWQVAWAHPKFGSILASCSYDGQVIIW   84 (302)
Q Consensus         5 ~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~s~D~~i~iw   84 (302)
                      .....|.+.|..+-|-++...|++||.|..|++|++..+....+.+|.|-.++|+.+.|.++  ++.+++.+.|+.+++|
T Consensus       169 ~~ld~h~gev~~v~~l~~sdtlatgg~Dr~Ik~W~v~~~k~~~~~tLaGs~g~it~~d~d~~--~~~~iAas~d~~~r~W  246 (459)
T KOG0288|consen  169 FVLDAHEGEVHDVEFLRNSDTLATGGSDRIIKLWNVLGEKSELISTLAGSLGNITSIDFDSD--NKHVIAASNDKNLRLW  246 (459)
T ss_pred             hhhhccccccceeEEccCcchhhhcchhhhhhhhhcccchhhhhhhhhccCCCcceeeecCC--CceEEeecCCCceeee
Confidence            34568999999999999888999999999999999876665667888888899999999765  7889999999999999


Q ss_pred             EcCCCCceeEEEEecCCCCCeeEEEecCCCCCcEEEEEecCCcEEEEEecCCCCee--------------eeeecccCCC
Q 022111           85 KEGNQNDWTQAHTFNDHKSSVNSIAWAPHELGLSLACGSSDGNISVFTATADGGWD--------------TTRIDQAHPV  150 (302)
Q Consensus        85 d~~~~~~~~~~~~~~~h~~~i~~l~~~pd~~~~~l~sg~~d~~v~~~~~~~~~~~~--------------~~~~~~~h~~  150 (302)
                      ++...   ...+++.+|.++|+++.|....  ..+++|+.|.+|++||+....+..              ...+..+|..
T Consensus       247 nvd~~---r~~~TLsGHtdkVt~ak~~~~~--~~vVsgs~DRtiK~WDl~k~~C~kt~l~~S~cnDI~~~~~~~~SgH~D  321 (459)
T KOG0288|consen  247 NVDSL---RLRHTLSGHTDKVTAAKFKLSH--SRVVSGSADRTIKLWDLQKAYCSKTVLPGSQCNDIVCSISDVISGHFD  321 (459)
T ss_pred             eccch---hhhhhhcccccceeeehhhccc--cceeeccccchhhhhhhhhhheeccccccccccceEecceeeeecccc
Confidence            98765   3677899999999999998653  359999999999999986532211              0111123433


Q ss_pred             CeEEEEeCCCC--------CCCceeecccCCCceeEEEeeCCCcEEEEEEecCccc--cccccccccCCCceeEEEeeCC
Q 022111          151 GVTSVSWAPAM--------APGALVGLGLLDPVQKLASCGCDNTVKVWKMYNGIWK--MDCFPALQMHSDWVRSVAWAPN  220 (302)
Q Consensus       151 ~v~~~~~~~~~--------~~~~~~~~~~~~~~~~l~s~~~D~~v~iwd~~~~~~~--~~~~~~~~~h~~~v~~v~~~p~  220 (302)
                      +-. -.|+...        ..+.+.++....++..|.+++.|.++.+.|+++....  +.......+|.  .+.+.|||+
T Consensus       322 kkv-RfwD~Rs~~~~~sv~~gg~vtSl~ls~~g~~lLsssRDdtl~viDlRt~eI~~~~sA~g~k~asD--wtrvvfSpd  398 (459)
T KOG0288|consen  322 KKV-RFWDIRSADKTRSVPLGGRVTSLDLSMDGLELLSSSRDDTLKVIDLRTKEIRQTFSAEGFKCASD--WTRVVFSPD  398 (459)
T ss_pred             cce-EEEeccCCceeeEeecCcceeeEeeccCCeEEeeecCCCceeeeecccccEEEEeeccccccccc--cceeEECCC
Confidence            210 0122100        0122233444456778999999999999999875311  11111112333  788999999


Q ss_pred             CCCCccEEEEEecCCeEEEEEeccCCcceeeeeeccCCC--cEEEEEEccCCCEEEEecCC-ceEEee
Q 022111          221 LGLPKSTIASASQDGTVVIWTCAKEGEQWEGRVLKDFKT--PVWSVSWSLTGNLLAVADAN-NVTLWK  285 (302)
Q Consensus       221 ~~~~~~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~~~~--~v~~~~~spdg~~la~~~~d-~i~~w~  285 (302)
                      +    .++|+||.||.|+||++.+.+-.   ..+.....  .|.+++|+|.|..|++++.+ .+++|.
T Consensus       399 ~----~YvaAGS~dgsv~iW~v~tgKlE---~~l~~s~s~~aI~s~~W~~sG~~Llsadk~~~v~lW~  459 (459)
T KOG0288|consen  399 G----SYVAAGSADGSVYIWSVFTGKLE---KVLSLSTSNAAITSLSWNPSGSGLLSADKQKAVTLWT  459 (459)
T ss_pred             C----ceeeeccCCCcEEEEEccCceEE---EEeccCCCCcceEEEEEcCCCchhhcccCCcceEecC
Confidence            5    78999999999999999865421   22232222  59999999999999999988 699994

>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]

Probab=99.94  E-value=5.7e-26  Score=185.90  Aligned_cols=255  Identities=16%  Similarity=0.247  Sum_probs=197.0

Q ss_pred             cccccccceeEEEEccCCCEEEEeeCCCcEEEEeecCCCceE------EEEecCcccCeEEEEeeCCCCCCEEEEEeCCC
Q 022111            6 IETGHEDTVHDVAMDFYGKRLATASSDSSIKIIGLSNSASQH------LATLKGHRGPVWQVAWAHPKFGSILASCSYDG   79 (302)
Q Consensus         6 ~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~lw~~~~~~~~~------~~~~~~h~~~v~~v~~~~~~~~~~l~s~s~D~   79 (302)
                      +..|.+..+.+..|+|||++|++|+.||.|.+|+..++....      -..+.-|.++|.|++|+.+  ...||+|+.||
T Consensus       208 IKFg~KSh~EcA~FSPDgqyLvsgSvDGFiEVWny~~GKlrKDLkYQAqd~fMMmd~aVlci~FSRD--sEMlAsGsqDG  285 (508)
T KOG0275|consen  208 IKFGQKSHVECARFSPDGQYLVSGSVDGFIEVWNYTTGKLRKDLKYQAQDNFMMMDDAVLCISFSRD--SEMLASGSQDG  285 (508)
T ss_pred             eecccccchhheeeCCCCceEeeccccceeeeehhccchhhhhhhhhhhcceeecccceEEEeeccc--HHHhhccCcCC
Confidence            345777788999999999999999999999999986543211      1234457899999999865  78999999999


Q ss_pred             eEEEEEcCCCCceeEEEEec-CCCCCeeEEEecCCCCCcEEEEEecCCcEEEEEecCCCCeeeeeecccCCCCeEEEEeC
Q 022111           80 QVIIWKEGNQNDWTQAHTFN-DHKSSVNSIAWAPHELGLSLACGSSDGNISVFTATADGGWDTTRIDQAHPVGVTSVSWA  158 (302)
Q Consensus        80 ~i~iwd~~~~~~~~~~~~~~-~h~~~i~~l~~~pd~~~~~l~sg~~d~~v~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~  158 (302)
                      .|++|.++++.   ++..|. .|..-|+|+.|+.|  +..+.+++-|.++++--+..+...  ..++ +|..-|+...|.
T Consensus       286 kIKvWri~tG~---ClRrFdrAHtkGvt~l~FSrD--~SqiLS~sfD~tvRiHGlKSGK~L--KEfr-GHsSyvn~a~ft  357 (508)
T KOG0275|consen  286 KIKVWRIETGQ---CLRRFDRAHTKGVTCLSFSRD--NSQILSASFDQTVRIHGLKSGKCL--KEFR-GHSSYVNEATFT  357 (508)
T ss_pred             cEEEEEEecch---HHHHhhhhhccCeeEEEEccC--cchhhcccccceEEEeccccchhH--HHhc-CccccccceEEc
Confidence            99999998863   566665 79999999999998  458999999999999877644332  3444 888889888887


Q ss_pred             CCCCCCceeecccCCCceeEEEeeCCCcEEEEEEecCccccccccccc--cCCCceeEEEeeCCCCCCccEEEEEecCCe
Q 022111          159 PAMAPGALVGLGLLDPVQKLASCGCDNTVKVWKMYNGIWKMDCFPALQ--MHSDWVRSVAWAPNLGLPKSTIASASQDGT  236 (302)
Q Consensus       159 ~~~~~~~~~~~~~~~~~~~l~s~~~D~~v~iwd~~~~~~~~~~~~~~~--~h~~~v~~v~~~p~~~~~~~~l~s~s~D~~  236 (302)
                      ++              |..+++++.|++|++|+.++.    +|+.+|.  +..-+|+++..-|..   +.+++.+....+
T Consensus       358 ~d--------------G~~iisaSsDgtvkvW~~Ktt----eC~~Tfk~~~~d~~vnsv~~~PKn---peh~iVCNrsnt  416 (508)
T KOG0275|consen  358 DD--------------GHHIISASSDGTVKVWHGKTT----ECLSTFKPLGTDYPVNSVILLPKN---PEHFIVCNRSNT  416 (508)
T ss_pred             CC--------------CCeEEEecCCccEEEecCcch----hhhhhccCCCCcccceeEEEcCCC---CceEEEEcCCCe
Confidence            75              478999999999999999876    5776665  356679999988874   578999999999


Q ss_pred             EEEEEeccCCcceeeeee--ccCCCcEEEEEEccCCCEEEEecCCc-eEEeeecCCceEEEe
Q 022111          237 VVIWTCAKEGEQWEGRVL--KDFKTPVWSVSWSLTGNLLAVADANN-VTLWKEAVDGEWQQV  295 (302)
Q Consensus       237 i~iwd~~~~~~~~~~~~~--~~~~~~v~~~~~spdg~~la~~~~d~-i~~w~~~~~~~~~~~  295 (302)
                      +.|-++...   -...+.  +..++..-+...||.|.++.+.+.|. +.-+.. .+|.+|..
T Consensus       417 v~imn~qGQ---vVrsfsSGkREgGdFi~~~lSpkGewiYcigED~vlYCF~~-~sG~LE~t  474 (508)
T KOG0275|consen  417 VYIMNMQGQ---VVRSFSSGKREGGDFINAILSPKGEWIYCIGEDGVLYCFSV-LSGKLERT  474 (508)
T ss_pred             EEEEeccce---EEeeeccCCccCCceEEEEecCCCcEEEEEccCcEEEEEEe-ecCceeee
Confidence            999887632   111121  22345577888999999999998885 555554 35665544

>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]

Probab=99.94  E-value=1.2e-25  Score=199.51  Aligned_cols=235  Identities=23%  Similarity=0.389  Sum_probs=183.5

Q ss_pred             ccccccceeE-EEEcc-CCCEEEEeeCCCcEEEEeecCCCceEEEEecCcccCeEEEEeeCCCCCCEEEEEeCCCeEEEE
Q 022111            7 ETGHEDTVHD-VAMDF-YGKRLATASSDSSIKIIGLSNSASQHLATLKGHRGPVWQVAWAHPKFGSILASCSYDGQVIIW   84 (302)
Q Consensus         7 ~~~h~~~v~~-~~~s~-~~~~l~s~~~d~~v~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~s~D~~i~iw   84 (302)
                      +.+|.+-|.. +|+.+ ++-.|++|+.|.++.+|...+  ..++..|++|+..|.+++-.  .++. ++|||+|.++++|
T Consensus        53 ~~~~~g~i~~~i~y~e~~~~~l~~g~~D~~i~v~~~~~--~~P~~~LkgH~snVC~ls~~--~~~~-~iSgSWD~TakvW  127 (745)
T KOG0301|consen   53 FEGPKGFIANSICYAESDKGRLVVGGMDTTIIVFKLSQ--AEPLYTLKGHKSNVCSLSIG--EDGT-LISGSWDSTAKVW  127 (745)
T ss_pred             cccCcceeeccceeccccCcceEeecccceEEEEecCC--CCchhhhhccccceeeeecC--CcCc-eEecccccceEEe
Confidence            5567776655 77774 445699999999999999865  45788999999999999743  3355 8999999999999


Q ss_pred             EcCCCCceeEEEEecCCCCCeeEEEecCCCCCcEEEEEecCCcEEEEEecCCCCeeeeeecccCCCCeEEEEeCCCCCCC
Q 022111           85 KEGNQNDWTQAHTFNDHKSSVNSIAWAPHELGLSLACGSSDGNISVFTATADGGWDTTRIDQAHPVGVTSVSWAPAMAPG  164 (302)
Q Consensus        85 d~~~~~~~~~~~~~~~h~~~i~~l~~~pd~~~~~l~sg~~d~~v~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~  164 (302)
                      .+..     +...+.+|+..|.+++.-|+.   .++||+.|++|++|...+    ....+. +|+.-|+.++.-++    
T Consensus       128 ~~~~-----l~~~l~gH~asVWAv~~l~e~---~~vTgsaDKtIklWk~~~----~l~tf~-gHtD~VRgL~vl~~----  190 (745)
T KOG0301|consen  128 RIGE-----LVYSLQGHTASVWAVASLPEN---TYVTGSADKTIKLWKGGT----LLKTFS-GHTDCVRGLAVLDD----  190 (745)
T ss_pred             cchh-----hhcccCCcchheeeeeecCCC---cEEeccCcceeeeccCCc----hhhhhc-cchhheeeeEEecC----
Confidence            7643     455688999999999998873   699999999999996532    223443 89999999987664    


Q ss_pred             ceeecccCCCceeEEEeeCCCcEEEEEEecCccccccccccccCCCceeEEEeeCCCCCCccEEEEEecCCeEEEEEecc
Q 022111          165 ALVGLGLLDPVQKLASCGCDNTVKVWKMYNGIWKMDCFPALQMHSDWVRSVAWAPNLGLPKSTIASASQDGTVVIWTCAK  244 (302)
Q Consensus       165 ~~~~~~~~~~~~~l~s~~~D~~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~l~s~s~D~~i~iwd~~~  244 (302)
                                 .-|+||+.||.|++|++..     .++.+..||++.|++++..++.    ..|+|+++|+++|||+...
T Consensus       191 -----------~~flScsNDg~Ir~w~~~g-----e~l~~~~ghtn~vYsis~~~~~----~~Ivs~gEDrtlriW~~~e  250 (745)
T KOG0301|consen  191 -----------SHFLSCSNDGSIRLWDLDG-----EVLLEMHGHTNFVYSISMALSD----GLIVSTGEDRTLRIWKKDE  250 (745)
T ss_pred             -----------CCeEeecCCceEEEEeccC-----ceeeeeeccceEEEEEEecCCC----CeEEEecCCceEEEeecCc
Confidence                       3699999999999999954     4677888999999999955442    6799999999999999763


Q ss_pred             CCcceeeeeeccCCCcEEEEEEccCCCEEEEecCCceEEeeecC
Q 022111          245 EGEQWEGRVLKDFKTPVWSVSWSLTGNLLAVADANNVTLWKEAV  288 (302)
Q Consensus       245 ~~~~~~~~~~~~~~~~v~~~~~spdg~~la~~~~d~i~~w~~~~  288 (302)
                      ..     ....-....||++.+-++|++++.+++..|++|....
T Consensus       251 ~~-----q~I~lPttsiWsa~~L~NgDIvvg~SDG~VrVfT~~k  289 (745)
T KOG0301|consen  251 CV-----QVITLPTTSIWSAKVLLNGDIVVGGSDGRVRVFTVDK  289 (745)
T ss_pred             eE-----EEEecCccceEEEEEeeCCCEEEeccCceEEEEEecc
Confidence            21     1222223469999999999876555444799998753

>KOG0282 consensus mRNA splicing factor [Function unknown]

Probab=99.94  E-value=1.8e-26  Score=197.24  Aligned_cols=213  Identities=20%  Similarity=0.347  Sum_probs=169.0

Q ss_pred             eEEEEecCcccCeEEEEeeCCCCCCEEEEEeCCCeEEEEEcCCCCceeEEEEecCCCCCeeEEEecCCCCCcEEEEEecC
Q 022111           46 QHLATLKGHRGPVWQVAWAHPKFGSILASCSYDGQVIIWKEGNQNDWTQAHTFNDHKSSVNSIAWAPHELGLSLACGSSD  125 (302)
Q Consensus        46 ~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~h~~~i~~l~~~pd~~~~~l~sg~~d  125 (302)
                      +.+.++.||...|+++.|.|. .+.+|++++.|+.|+||++....  .++.+|.+|+.+|.+++|+++  |..+.+++.|
T Consensus       205 k~~~~~~gH~kgvsai~~fp~-~~hLlLS~gmD~~vklW~vy~~~--~~lrtf~gH~k~Vrd~~~s~~--g~~fLS~sfD  279 (503)
T KOG0282|consen  205 KLSHNLSGHTKGVSAIQWFPK-KGHLLLSGGMDGLVKLWNVYDDR--RCLRTFKGHRKPVRDASFNNC--GTSFLSASFD  279 (503)
T ss_pred             hheeeccCCccccchhhhccc-eeeEEEecCCCceEEEEEEecCc--ceehhhhcchhhhhhhhcccc--CCeeeeeecc
Confidence            346788999999999999864 48999999999999999986633  588999999999999999988  7799999999


Q ss_pred             CcEEEEEecCCCCeeeeeecccCCCCeEEEEeCCCCCCCceeecccCCCceeEEEeeCCCcEEEEEEecCcccccccccc
Q 022111          126 GNISVFTATADGGWDTTRIDQAHPVGVTSVSWAPAMAPGALVGLGLLDPVQKLASCGCDNTVKVWKMYNGIWKMDCFPAL  205 (302)
Q Consensus       126 ~~v~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~D~~v~iwd~~~~~~~~~~~~~~  205 (302)
                      +.+++||.+++...  ..+.  -...+.++.|.|+.             ...|++|+.|+.|+.||++++    +.++++
T Consensus       280 ~~lKlwDtETG~~~--~~f~--~~~~~~cvkf~pd~-------------~n~fl~G~sd~ki~~wDiRs~----kvvqeY  338 (503)
T KOG0282|consen  280 RFLKLWDTETGQVL--SRFH--LDKVPTCVKFHPDN-------------QNIFLVGGSDKKIRQWDIRSG----KVVQEY  338 (503)
T ss_pred             eeeeeeccccceEE--EEEe--cCCCceeeecCCCC-------------CcEEEEecCCCcEEEEeccch----HHHHHH
Confidence            99999999865432  2322  12346889999874             367899999999999999988    466778


Q ss_pred             ccCCCceeEEEeeCCCCCCccEEEEEecCCeEEEEEeccCCc---------------------ceee------ee-----
Q 022111          206 QMHSDWVRSVAWAPNLGLPKSTIASASQDGTVVIWTCAKEGE---------------------QWEG------RV-----  253 (302)
Q Consensus       206 ~~h~~~v~~v~~~p~~~~~~~~l~s~s~D~~i~iwd~~~~~~---------------------~~~~------~~-----  253 (302)
                      ..|-+.|+++.|-|++    ..+++.++|++++||+.+..-.                     .|..      .+     
T Consensus       339 d~hLg~i~~i~F~~~g----~rFissSDdks~riWe~~~~v~ik~i~~~~~hsmP~~~~~P~~~~~~aQs~dN~i~ifs~  414 (503)
T KOG0282|consen  339 DRHLGAILDITFVDEG----RRFISSSDDKSVRIWENRIPVPIKNIADPEMHTMPCLTLHPNGKWFAAQSMDNYIAIFST  414 (503)
T ss_pred             HhhhhheeeeEEccCC----ceEeeeccCccEEEEEcCCCccchhhcchhhccCcceecCCCCCeehhhccCceEEEEec
Confidence            8899999999999985    7899999999999999765310                     0000      00     


Q ss_pred             -----------eccCC--CcEEEEEEccCCCEEEEecCC-ceEEeeecC
Q 022111          254 -----------LKDFK--TPVWSVSWSLTGNLLAVADAN-NVTLWKEAV  288 (302)
Q Consensus       254 -----------~~~~~--~~v~~~~~spdg~~la~~~~d-~i~~w~~~~  288 (302)
                                 ..+|.  +--..+.|||||++|++|+.+ .+.+||-..
T Consensus       415 ~~~~r~nkkK~feGh~vaGys~~v~fSpDG~~l~SGdsdG~v~~wdwkt  463 (503)
T KOG0282|consen  415 VPPFRLNKKKRFEGHSVAGYSCQVDFSPDGRTLCSGDSDGKVNFWDWKT  463 (503)
T ss_pred             ccccccCHhhhhcceeccCceeeEEEcCCCCeEEeecCCccEEEeechh
Confidence                       01111  123468899999999999999 799999643

>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]

Probab=99.94  E-value=3.6e-27  Score=209.98  Aligned_cols=240  Identities=21%  Similarity=0.346  Sum_probs=198.8

Q ss_pred             ccccccceeEEEEccCCCEEEEeeCCCcEEEEeecCCCceEEEEecCcccCeEEEEeeCCCCCCEEEEEeCCCeEEEEEc
Q 022111            7 ETGHEDTVHDVAMDFYGKRLATASSDSSIKIIGLSNSASQHLATLKGHRGPVWQVAWAHPKFGSILASCSYDGQVIIWKE   86 (302)
Q Consensus         7 ~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~s~D~~i~iwd~   86 (302)
                      +..|...|.++..-..++.+++|+.|-.+.||.+...  ..+..+.+|+.+|.+|.|..+  ..+|++|+.+|+|++||+
T Consensus        24 ~~~hsaav~~lk~~~s~r~~~~Gg~~~k~~L~~i~kp--~~i~S~~~hespIeSl~f~~~--E~LlaagsasgtiK~wDl   99 (825)
T KOG0267|consen   24 FVAHSAAVGCLKIRKSSRSLVTGGEDEKVNLWAIGKP--NAITSLTGHESPIESLTFDTS--ERLLAAGSASGTIKVWDL   99 (825)
T ss_pred             hhhhhhhhceeeeeccceeeccCCCceeeccccccCC--chhheeeccCCcceeeecCcc--hhhhcccccCCceeeeeh
Confidence            4468888888887667899999999999999998543  245678999999999999764  468999999999999999


Q ss_pred             CCCCceeEEEEecCCCCCeeEEEecCCCCCcEEEEEecCCcEEEEEecCCCCeeeeeecccCCCCeEEEEeCCCCCCCce
Q 022111           87 GNQNDWTQAHTFNDHKSSVNSIAWAPHELGLSLACGSSDGNISVFTATADGGWDTTRIDQAHPVGVTSVSWAPAMAPGAL  166 (302)
Q Consensus        87 ~~~~~~~~~~~~~~h~~~i~~l~~~pd~~~~~l~sg~~d~~v~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~  166 (302)
                      +..   ..++++.+|...+..+.|+|-  +.+.|+|+.|..+++||.+..++..  .. .+|...|..+.|+|++     
T Consensus       100 eeA---k~vrtLtgh~~~~~sv~f~P~--~~~~a~gStdtd~~iwD~Rk~Gc~~--~~-~s~~~vv~~l~lsP~G-----  166 (825)
T KOG0267|consen  100 EEA---KIVRTLTGHLLNITSVDFHPY--GEFFASGSTDTDLKIWDIRKKGCSH--TY-KSHTRVVDVLRLSPDG-----  166 (825)
T ss_pred             hhh---hhhhhhhccccCcceeeeccc--eEEeccccccccceehhhhccCcee--ee-cCCcceeEEEeecCCC-----
Confidence            875   356789999999999999997  7789999999999999998766543  22 3688899999999974     


Q ss_pred             eecccCCCceeEEEeeCCCcEEEEEEecCccccccccccccCCCceeEEEeeCCCCCCccEEEEEecCCeEEEEEeccCC
Q 022111          167 VGLGLLDPVQKLASCGCDNTVKVWKMYNGIWKMDCFPALQMHSDWVRSVAWAPNLGLPKSTIASASQDGTVVIWTCAKEG  246 (302)
Q Consensus       167 ~~~~~~~~~~~l~s~~~D~~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~l~s~s~D~~i~iwd~~~~~  246 (302)
                               .++++++.|.+++|||+..+    +...+|..|++.|.++.|+|..    -.+++||.|+++++||+++-.
T Consensus       167 ---------r~v~~g~ed~tvki~d~~ag----k~~~ef~~~e~~v~sle~hp~e----~Lla~Gs~d~tv~f~dletfe  229 (825)
T KOG0267|consen  167 ---------RWVASGGEDNTVKIWDLTAG----KLSKEFKSHEGKVQSLEFHPLE----VLLAPGSSDRTVRFWDLETFE  229 (825)
T ss_pred             ---------ceeeccCCcceeeeeccccc----ccccccccccccccccccCchh----hhhccCCCCceeeeeccceeE
Confidence                     79999999999999999876    5667899999999999999974    579999999999999997410


Q ss_pred             cceeeeeeccCCCcEEEEEEccCCCEEEEecCCceEE
Q 022111          247 EQWEGRVLKDFKTPVWSVSWSLTGNLLAVADANNVTL  283 (302)
Q Consensus       247 ~~~~~~~~~~~~~~v~~~~~spdg~~la~~~~d~i~~  283 (302)
                         .-.....+...|.+++|+|+|+.+++|...++..
T Consensus       230 ---~I~s~~~~~~~v~~~~fn~~~~~~~~G~q~sl~~  263 (825)
T KOG0267|consen  230 ---VISSGKPETDGVRSLAFNPDGKIVLSGEQISLSE  263 (825)
T ss_pred             ---EeeccCCccCCceeeeecCCceeeecCchhhhhh
Confidence               0111234456799999999999999997766653

>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.94  E-value=4e-25  Score=188.00  Aligned_cols=249  Identities=22%  Similarity=0.290  Sum_probs=189.7

Q ss_pred             ccccccceeEEEEccCCCEEEEeeCCCcEEEEeecCCCce--EE------------EEe--cCcccCeEEEEeeCCCCCC
Q 022111            7 ETGHEDTVHDVAMDFYGKRLATASSDSSIKIIGLSNSASQ--HL------------ATL--KGHRGPVWQVAWAHPKFGS   70 (302)
Q Consensus         7 ~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~lw~~~~~~~~--~~------------~~~--~~h~~~v~~v~~~~~~~~~   70 (302)
                      ...|.-+|.++++++++++.++++.|++|.-|++..+...  .+            ...  ++|...+.+++.+++  ++
T Consensus       138 ~~~H~~s~~~vals~d~~~~fsask~g~i~kw~v~tgk~~~~i~~~~ev~k~~~~~~k~~r~~h~keil~~avS~D--gk  215 (479)
T KOG0299|consen  138 IGKHQLSVTSVALSPDDKRVFSASKDGTILKWDVLTGKKDRYIIERDEVLKSHGNPLKESRKGHVKEILTLAVSSD--GK  215 (479)
T ss_pred             eccccCcceEEEeeccccceeecCCCcceeeeehhcCcccccccccchhhhhccCCCCcccccccceeEEEEEcCC--Cc
Confidence            4479999999999999999999999999999998543311  00            011  378899999999875  89


Q ss_pred             EEEEEeCCCeEEEEEcCCCCceeEEEEecCCCCCeeEEEecCCCCCcEEEEEecCCcEEEEEecCCCCeeeeeecccCCC
Q 022111           71 ILASCSYDGQVIIWKEGNQNDWTQAHTFNDHKSSVNSIAWAPHELGLSLACGSSDGNISVFTATADGGWDTTRIDQAHPV  150 (302)
Q Consensus        71 ~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~h~~~i~~l~~~pd~~~~~l~sg~~d~~v~~~~~~~~~~~~~~~~~~~h~~  150 (302)
                      +||+|+.|..|.||+..+..   .++.+++|.+.|.+++|-..  ...+.+++.|+.|++|++.....   .....+|..
T Consensus       216 ylatgg~d~~v~Iw~~~t~e---hv~~~~ghr~~V~~L~fr~g--t~~lys~s~Drsvkvw~~~~~s~---vetlyGHqd  287 (479)
T KOG0299|consen  216 YLATGGRDRHVQIWDCDTLE---HVKVFKGHRGAVSSLAFRKG--TSELYSASADRSVKVWSIDQLSY---VETLYGHQD  287 (479)
T ss_pred             EEEecCCCceEEEecCcccc---hhhcccccccceeeeeeecC--ccceeeeecCCceEEEehhHhHH---HHHHhCCcc
Confidence            99999999999999998764   67789999999999999644  33799999999999999864321   122237888


Q ss_pred             CeEEEEeCCCCCCCceeecccCCCceeEEEeeCCCcEEEEEEecCccccccccccccCCCceeEEEeeCCCCCCccEEEE
Q 022111          151 GVTSVSWAPAMAPGALVGLGLLDPVQKLASCGCDNTVKVWKMYNGIWKMDCFPALQMHSDWVRSVAWAPNLGLPKSTIAS  230 (302)
Q Consensus       151 ~v~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~D~~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~l~s  230 (302)
                      .|..+.-..              .++.+-.|+.|+++++|++....     .-.+.+|.+.+-|++|-.+     .++++
T Consensus       288 ~v~~IdaL~--------------reR~vtVGgrDrT~rlwKi~ees-----qlifrg~~~sidcv~~In~-----~Hfvs  343 (479)
T KOG0299|consen  288 GVLGIDALS--------------RERCVTVGGRDRTVRLWKIPEES-----QLIFRGGEGSIDCVAFIND-----EHFVS  343 (479)
T ss_pred             ceeeechhc--------------ccceEEeccccceeEEEeccccc-----eeeeeCCCCCeeeEEEecc-----cceee
Confidence            887764322              23444445699999999996531     2246789999999999765     67999


Q ss_pred             EecCCeEEEEEeccCCcceeeeeec---------cCCCcEEEEEEccCCCEEEEecCC-ceEEeeecCC
Q 022111          231 ASQDGTVVIWTCAKEGEQWEGRVLK---------DFKTPVWSVSWSLTGNLLAVADAN-NVTLWKEAVD  289 (302)
Q Consensus       231 ~s~D~~i~iwd~~~~~~~~~~~~~~---------~~~~~v~~~~~spdg~~la~~~~d-~i~~w~~~~~  289 (302)
                      ||+||.|.+|++...+..+......         ....+|.+++-.|..+++|+|+.+ .|+||...++
T Consensus       344 GSdnG~IaLWs~~KKkplf~~~~AHgv~~~~~~~~~~~Witsla~i~~sdL~asGS~~G~vrLW~i~~g  412 (479)
T KOG0299|consen  344 GSDNGSIALWSLLKKKPLFTSRLAHGVIPELDPVNGNFWITSLAVIPGSDLLASGSWSGCVRLWKIEDG  412 (479)
T ss_pred             ccCCceEEEeeecccCceeEeeccccccCCccccccccceeeeEecccCceEEecCCCCceEEEEecCC
Confidence            9999999999987643322211111         112378899999999999999988 6999998764

>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]

Probab=99.94  E-value=3.9e-25  Score=179.95  Aligned_cols=221  Identities=19%  Similarity=0.283  Sum_probs=170.7

Q ss_pred             EEecCcccCeEEEEeeCCCCCCEEEEEeCCCeEEEEEcCCC---------------CceeEEEEecCCCCCeeEEEecCC
Q 022111           49 ATLKGHRGPVWQVAWAHPKFGSILASCSYDGQVIIWKEGNQ---------------NDWTQAHTFNDHKSSVNSIAWAPH  113 (302)
Q Consensus        49 ~~~~~h~~~v~~v~~~~~~~~~~l~s~s~D~~i~iwd~~~~---------------~~~~~~~~~~~h~~~i~~l~~~pd  113 (302)
                      ..+..|++++++.+|+++  |.++||||.|..|+|.|++..               ..-..+.++..|.++|+++.|+|.
T Consensus       106 ~ylt~HK~~cR~aafs~D--G~lvATGsaD~SIKildvermlaks~~~em~~~~~qa~hPvIRTlYDH~devn~l~FHPr  183 (430)
T KOG0640|consen  106 KYLTSHKSPCRAAAFSPD--GSLVATGSADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYDHVDEVNDLDFHPR  183 (430)
T ss_pred             EEEeecccceeeeeeCCC--CcEEEccCCcceEEEeehhhhhhhcchhhhccCCcccCCceEeehhhccCcccceeecch
Confidence            456789999999999875  899999999999999997511               011245678889999999999997


Q ss_pred             CCCcEEEEEecCCcEEEEEecCCCCeeeeeecccCCCCeEEEEeCCCCCCCceeecccCCCceeEEEeeCCCcEEEEEEe
Q 022111          114 ELGLSLACGSSDGNISVFTATADGGWDTTRIDQAHPVGVTSVSWAPAMAPGALVGLGLLDPVQKLASCGCDNTVKVWKMY  193 (302)
Q Consensus       114 ~~~~~l~sg~~d~~v~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~D~~v~iwd~~  193 (302)
                        ..+|++|+.|++|++||..+.....-...- .-..+|.++.|.|.+              .+|+.|..-.++++||+.
T Consensus       184 --e~ILiS~srD~tvKlFDfsK~saKrA~K~~-qd~~~vrsiSfHPsG--------------efllvgTdHp~~rlYdv~  246 (430)
T KOG0640|consen  184 --ETILISGSRDNTVKLFDFSKTSAKRAFKVF-QDTEPVRSISFHPSG--------------EFLLVGTDHPTLRLYDVN  246 (430)
T ss_pred             --hheEEeccCCCeEEEEecccHHHHHHHHHh-hccceeeeEeecCCC--------------ceEEEecCCCceeEEecc
Confidence              459999999999999998754321111111 124568999999974              789999999999999998


Q ss_pred             cCccccccccccccCCCceeEEEeeCCCCCCccEEEEEecCCeEEEEEeccCCcceeeeeeccC-CCcEEEEEEccCCCE
Q 022111          194 NGIWKMDCFPALQMHSDWVRSVAWAPNLGLPKSTIASASQDGTVVIWTCAKEGEQWEGRVLKDF-KTPVWSVSWSLTGNL  272 (302)
Q Consensus       194 ~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~~-~~~v~~~~~spdg~~  272 (302)
                      +.+--+.+. .-.+|++.|++|.+++.+    +.-+++|.||.|||||-.++.  ....+...| +..|.+..|..+|++
T Consensus       247 T~Qcfvsan-Pd~qht~ai~~V~Ys~t~----~lYvTaSkDG~IklwDGVS~r--Cv~t~~~AH~gsevcSa~Ftkn~ky  319 (430)
T KOG0640|consen  247 TYQCFVSAN-PDDQHTGAITQVRYSSTG----SLYVTASKDGAIKLWDGVSNR--CVRTIGNAHGGSEVCSAVFTKNGKY  319 (430)
T ss_pred             ceeEeeecC-cccccccceeEEEecCCc----cEEEEeccCCcEEeeccccHH--HHHHHHhhcCCceeeeEEEccCCeE
Confidence            753211221 236899999999999985    789999999999999976532  111222233 457999999999999


Q ss_pred             EEEecCC-ceEEeeecCCceEEEe
Q 022111          273 LAVADAN-NVTLWKEAVDGEWQQV  295 (302)
Q Consensus       273 la~~~~d-~i~~w~~~~~~~~~~~  295 (302)
                      |++.+.| .++||....++..+++
T Consensus       320 iLsSG~DS~vkLWEi~t~R~l~~Y  343 (430)
T KOG0640|consen  320 ILSSGKDSTVKLWEISTGRMLKEY  343 (430)
T ss_pred             EeecCCcceeeeeeecCCceEEEE
Confidence            9999999 6999999988887765

>KOG0293 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.94  E-value=2.3e-25  Score=187.28  Aligned_cols=220  Identities=22%  Similarity=0.272  Sum_probs=163.3

Q ss_pred             cccccccccceeEEEEccCCCEEEEeeCCCcEEEEeecCCCceEEEEe-cCcccCeEEEEeeCCCCCCEEEEEeCCCeEE
Q 022111            4 QKIETGHEDTVHDVAMDFYGKRLATASSDSSIKIIGLSNSASQHLATL-KGHRGPVWQVAWAHPKFGSILASCSYDGQVI   82 (302)
Q Consensus         4 ~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~lw~~~~~~~~~~~~~-~~h~~~v~~v~~~~~~~~~~l~s~s~D~~i~   82 (302)
                      .++..||..+|.-+.||||.++|++|+.|..+++||..++..  ...+ .+|...+.+++|.|+  |..+++|+.|+++.
T Consensus       262 ~~tlvgh~~~V~yi~wSPDdryLlaCg~~e~~~lwDv~tgd~--~~~y~~~~~~S~~sc~W~pD--g~~~V~Gs~dr~i~  337 (519)
T KOG0293|consen  262 KKTLVGHSQPVSYIMWSPDDRYLLACGFDEVLSLWDVDTGDL--RHLYPSGLGFSVSSCAWCPD--GFRFVTGSPDRTII  337 (519)
T ss_pred             eeeeecccCceEEEEECCCCCeEEecCchHheeeccCCcchh--hhhcccCcCCCcceeEEccC--CceeEecCCCCcEE
Confidence            456779999999999999999999999999999999976432  2222 235678899999875  88999999999999


Q ss_pred             EEEcCCCCceeEEEEecCC-CCCeeEEEecCCCCCcEEEEEecCCcEEEEEecCCCCeeeeeecccCCCCeEEEEeCCCC
Q 022111           83 IWKEGNQNDWTQAHTFNDH-KSSVNSIAWAPHELGLSLACGSSDGNISVFTATADGGWDTTRIDQAHPVGVTSVSWAPAM  161 (302)
Q Consensus        83 iwd~~~~~~~~~~~~~~~h-~~~i~~l~~~pd~~~~~l~sg~~d~~v~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~  161 (302)
                      .||+..+    ......+- ...|.+++..+|  |+.+++...|..|++|+.+..-...   +. .-..++++...+-++
T Consensus       338 ~wdlDgn----~~~~W~gvr~~~v~dlait~D--gk~vl~v~~d~~i~l~~~e~~~dr~---li-se~~~its~~iS~d~  407 (519)
T KOG0293|consen  338 MWDLDGN----ILGNWEGVRDPKVHDLAITYD--GKYVLLVTVDKKIRLYNREARVDRG---LI-SEEQPITSFSISKDG  407 (519)
T ss_pred             EecCCcc----hhhcccccccceeEEEEEcCC--CcEEEEEecccceeeechhhhhhhc---cc-cccCceeEEEEcCCC
Confidence            9998653    22233332 357899999998  7789989999999999876422111   10 112345555544432


Q ss_pred             CCC---------ceeec---------------------cc-CCCceeEEEeeCCCcEEEEEEecCccccccccccccCCC
Q 022111          162 APG---------ALVGL---------------------GL-LDPVQKLASCGCDNTVKVWKMYNGIWKMDCFPALQMHSD  210 (302)
Q Consensus       162 ~~~---------~~~~~---------------------~~-~~~~~~l~s~~~D~~v~iwd~~~~~~~~~~~~~~~~h~~  210 (302)
                      ...         .++.+                     .+ ..+..+++|||+|+.|+||+..++    ..+.++.||..
T Consensus       408 k~~LvnL~~qei~LWDl~e~~lv~kY~Ghkq~~fiIrSCFgg~~~~fiaSGSED~kvyIWhr~sg----kll~~LsGHs~  483 (519)
T KOG0293|consen  408 KLALVNLQDQEIHLWDLEENKLVRKYFGHKQGHFIIRSCFGGGNDKFIASGSEDSKVYIWHRISG----KLLAVLSGHSK  483 (519)
T ss_pred             cEEEEEcccCeeEEeecchhhHHHHhhcccccceEEEeccCCCCcceEEecCCCceEEEEEccCC----ceeEeecCCcc
Confidence            100         00000                     00 123578999999999999999887    46778999999


Q ss_pred             ceeEEEeeCCCCCCccEEEEEecCCeEEEEEecc
Q 022111          211 WVRSVAWAPNLGLPKSTIASASQDGTVVIWTCAK  244 (302)
Q Consensus       211 ~v~~v~~~p~~~~~~~~l~s~s~D~~i~iwd~~~  244 (302)
                      .|+||+|+|..   +.++||+|+||+||||-...
T Consensus       484 ~vNcVswNP~~---p~m~ASasDDgtIRIWg~~~  514 (519)
T KOG0293|consen  484 TVNCVSWNPAD---PEMFASASDDGTIRIWGPSD  514 (519)
T ss_pred             eeeEEecCCCC---HHHhhccCCCCeEEEecCCc
Confidence            99999999974   68999999999999997653

>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=99.93  E-value=3.1e-24  Score=192.10  Aligned_cols=200  Identities=20%  Similarity=0.239  Sum_probs=155.9

Q ss_pred             cCeEEEEeeCCCCCCEEEEEeCCCeEEEEEcCCCCceeEEEEecCCCCCeeEEEecCCCCCcEEEEEecCCcEEEEEecC
Q 022111           56 GPVWQVAWAHPKFGSILASCSYDGQVIIWKEGNQNDWTQAHTFNDHKSSVNSIAWAPHELGLSLACGSSDGNISVFTATA  135 (302)
Q Consensus        56 ~~v~~v~~~~~~~~~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~h~~~i~~l~~~pd~~~~~l~sg~~d~~v~~~~~~~  135 (302)
                      +.+.+.+|.|.  ++++++|...|.+.++|+.+..   .+.++..|.+.|.+++.+||  +..+++||.|++|++||..-
T Consensus       413 ~y~l~~~Fvpg--d~~Iv~G~k~Gel~vfdlaS~~---l~Eti~AHdgaIWsi~~~pD--~~g~vT~saDktVkfWdf~l  485 (888)
T KOG0306|consen  413 GYILASKFVPG--DRYIVLGTKNGELQVFDLASAS---LVETIRAHDGAIWSISLSPD--NKGFVTGSADKTVKFWDFKL  485 (888)
T ss_pred             ccEEEEEecCC--CceEEEeccCCceEEEEeehhh---hhhhhhccccceeeeeecCC--CCceEEecCCcEEEEEeEEE
Confidence            45667788753  6889999999999999997653   56677789999999999999  55799999999999998742


Q ss_pred             CCC---eeeeeecc------cCCCCeEEEEeCCCCCCCceeecccCCCceeEEEeeCCCcEEEEEEecCccccccccccc
Q 022111          136 DGG---WDTTRIDQ------AHPVGVTSVSWAPAMAPGALVGLGLLDPVQKLASCGCDNTVKVWKMYNGIWKMDCFPALQ  206 (302)
Q Consensus       136 ~~~---~~~~~~~~------~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~D~~v~iwd~~~~~~~~~~~~~~~  206 (302)
                      ...   .+...+..      .-+..|.++++||++              ++||.+--|++|+||-+.+-    +.+-.+.
T Consensus       486 ~~~~~gt~~k~lsl~~~rtLel~ddvL~v~~Spdg--------------k~LaVsLLdnTVkVyflDtl----KFflsLY  547 (888)
T KOG0306|consen  486 VVSVPGTQKKVLSLKHTRTLELEDDVLCVSVSPDG--------------KLLAVSLLDNTVKVYFLDTL----KFFLSLY  547 (888)
T ss_pred             EeccCcccceeeeeccceEEeccccEEEEEEcCCC--------------cEEEEEeccCeEEEEEecce----eeeeeec
Confidence            100   00000111      124568888888864              89999999999999999864    4556789


Q ss_pred             cCCCceeEEEeeCCCCCCccEEEEEecCCeEEEEEeccCCcceeeeeeccCCCcEEEEEEccCCCEEEEecCC-ceEEee
Q 022111          207 MHSDWVRSVAWAPNLGLPKSTIASASQDGTVVIWTCAKEGEQWEGRVLKDFKTPVWSVSWSLTGNLLAVADAN-NVTLWK  285 (302)
Q Consensus       207 ~h~~~v~~v~~~p~~~~~~~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~la~~~~d-~i~~w~  285 (302)
                      ||+=+|.|+..+||.    +.++|||.|++|+||-++-..  . ......|.+.|.++.|-|....+-+++.| .++.||
T Consensus       548 GHkLPV~smDIS~DS----klivTgSADKnVKiWGLdFGD--C-HKS~fAHdDSvm~V~F~P~~~~FFt~gKD~kvKqWD  620 (888)
T KOG0306|consen  548 GHKLPVLSMDISPDS----KLIVTGSADKNVKIWGLDFGD--C-HKSFFAHDDSVMSVQFLPKTHLFFTCGKDGKVKQWD  620 (888)
T ss_pred             ccccceeEEeccCCc----CeEEeccCCCceEEeccccch--h-hhhhhcccCceeEEEEcccceeEEEecCcceEEeec
Confidence            999999999999996    789999999999999775421  1 12335677889999999988777777788 799997


Q ss_pred             ec
Q 022111          286 EA  287 (302)
Q Consensus       286 ~~  287 (302)
                      ..
T Consensus       621 g~  622 (888)
T KOG0306|consen  621 GE  622 (888)
T ss_pred             hh
Confidence            53

>KOG0283 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.93  E-value=1.5e-24  Score=196.52  Aligned_cols=207  Identities=18%  Similarity=0.271  Sum_probs=158.5

Q ss_pred             ccccccccceeEEEEccCCCEEEEeeCCCcEEEEeecCCCceEEEEecCcccCeEEEEeeCCCCCCEEEEEeCCCeEEEE
Q 022111            5 KIETGHEDTVHDVAMDFYGKRLATASSDSSIKIIGLSNSASQHLATLKGHRGPVWQVAWAHPKFGSILASCSYDGQVIIW   84 (302)
Q Consensus         5 ~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~s~D~~i~iw   84 (302)
                      ..+.||.+.|.+|+||.++ +|+|++.|+|||||.+..  ..++..| .|.+.|+||+|.| .+.++++|||-|+.||||
T Consensus       363 ~ef~GHt~DILDlSWSKn~-fLLSSSMDKTVRLWh~~~--~~CL~~F-~HndfVTcVaFnP-vDDryFiSGSLD~KvRiW  437 (712)
T KOG0283|consen  363 CEFKGHTADILDLSWSKNN-FLLSSSMDKTVRLWHPGR--KECLKVF-SHNDFVTCVAFNP-VDDRYFISGSLDGKVRLW  437 (712)
T ss_pred             hhhhccchhheecccccCC-eeEeccccccEEeecCCC--cceeeEE-ecCCeeEEEEecc-cCCCcEeecccccceEEe
Confidence            3467999999999999855 899999999999999875  3567766 5999999999976 468999999999999999


Q ss_pred             EcCCCCceeEEEEecCCCCCeeEEEecCCCCCcEEEEEecCCcEEEEEecCCCCeeeeeec------ccCCCCeEEEEeC
Q 022111           85 KEGNQNDWTQAHTFNDHKSSVNSIAWAPHELGLSLACGSSDGNISVFTATADGGWDTTRID------QAHPVGVTSVSWA  158 (302)
Q Consensus        85 d~~~~~~~~~~~~~~~h~~~i~~l~~~pd~~~~~l~sg~~d~~v~~~~~~~~~~~~~~~~~------~~h~~~v~~~~~~  158 (302)
                      ++.+.    .+.-...-.+.|++++|.||  |+..+.|+.+|.+++|+...........+.      ..|. .|+.+.+.
T Consensus       438 sI~d~----~Vv~W~Dl~~lITAvcy~Pd--Gk~avIGt~~G~C~fY~t~~lk~~~~~~I~~~~~Kk~~~~-rITG~Q~~  510 (712)
T KOG0283|consen  438 SISDK----KVVDWNDLRDLITAVCYSPD--GKGAVIGTFNGYCRFYDTEGLKLVSDFHIRLHNKKKKQGK-RITGLQFF  510 (712)
T ss_pred             ecCcC----eeEeehhhhhhheeEEeccC--CceEEEEEeccEEEEEEccCCeEEEeeeEeeccCccccCc-eeeeeEec
Confidence            99764    33344455689999999999  889999999999999987532111111111      1233 79999998


Q ss_pred             CCCCCCceeecccCCCceeEEEeeCCCcEEEEEEecCccccccccccccCCC--ceeEEEeeCCCCCCccEEEEEecCCe
Q 022111          159 PAMAPGALVGLGLLDPVQKLASCGCDNTVKVWKMYNGIWKMDCFPALQMHSD--WVRSVAWAPNLGLPKSTIASASQDGT  236 (302)
Q Consensus       159 ~~~~~~~~~~~~~~~~~~~l~s~~~D~~v~iwd~~~~~~~~~~~~~~~~h~~--~v~~v~~~p~~~~~~~~l~s~s~D~~  236 (302)
                      |..             ...++..+.|..|||+|+++.    ..+..|+|+..  .-...+|+.|+    ++|+++++|..
T Consensus       511 p~~-------------~~~vLVTSnDSrIRI~d~~~~----~lv~KfKG~~n~~SQ~~Asfs~Dg----k~IVs~seDs~  569 (712)
T KOG0283|consen  511 PGD-------------PDEVLVTSNDSRIRIYDGRDK----DLVHKFKGFRNTSSQISASFSSDG----KHIVSASEDSW  569 (712)
T ss_pred             CCC-------------CCeEEEecCCCceEEEeccch----hhhhhhcccccCCcceeeeEccCC----CEEEEeecCce
Confidence            853             235666778999999999654    23445555432  23456888875    88999999999


Q ss_pred             EEEEEecc
Q 022111          237 VVIWTCAK  244 (302)
Q Consensus       237 i~iwd~~~  244 (302)
                      |.||+...
T Consensus       570 VYiW~~~~  577 (712)
T KOG0283|consen  570 VYIWKNDS  577 (712)
T ss_pred             EEEEeCCC
Confidence            99999743

>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]

Probab=99.93  E-value=1.8e-25  Score=176.88  Aligned_cols=249  Identities=22%  Similarity=0.326  Sum_probs=196.8

Q ss_pred             ccccccccceeEEEEcc---CCCEEEEeeCCCcEEEEeecCCCceEEEEecCcccCeEEEEeeCCCCCCEEEEEeCCCeE
Q 022111            5 KIETGHEDTVHDVAMDF---YGKRLATASSDSSIKIIGLSNSASQHLATLKGHRGPVWQVAWAHPKFGSILASCSYDGQV   81 (302)
Q Consensus         5 ~~~~~h~~~v~~~~~s~---~~~~l~s~~~d~~v~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~s~D~~i   81 (302)
                      ++-.||+.+|..++|||   +|-+|.|++.|+.--|=+-  .++.-+.+|.||++.|++.+...  +..+-|+++.|-+.
T Consensus         8 l~c~ghtrpvvdl~~s~itp~g~flisa~kd~~pmlr~g--~tgdwigtfeghkgavw~~~l~~--na~~aasaaadfta   83 (334)
T KOG0278|consen    8 LTCHGHTRPVVDLAFSPITPDGYFLISASKDGKPMLRNG--DTGDWIGTFEGHKGAVWSATLNK--NATRAASAAADFTA   83 (334)
T ss_pred             eEEcCCCcceeEEeccCCCCCceEEEEeccCCCchhccC--CCCCcEEeeeccCcceeeeecCc--hhhhhhhhcccchh
Confidence            34569999999999985   7899999999998766433  33556899999999999998753  36788999999999


Q ss_pred             EEEEcCCCCceeEEEEecCCCCCeeEEEecCCCCCcEEEEEecCCcEEEEEecCCCCeeeeeecccCCCCeEEEEeCCCC
Q 022111           82 IIWKEGNQNDWTQAHTFNDHKSSVNSIAWAPHELGLSLACGSSDGNISVFTATADGGWDTTRIDQAHPVGVTSVSWAPAM  161 (302)
Q Consensus        82 ~iwd~~~~~~~~~~~~~~~h~~~i~~l~~~pd~~~~~l~sg~~d~~v~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~  161 (302)
                      ++||.-++.   .++.|. |+.-|.+++|+.|  ..+|++|+.++.+++||+.... -.+.++. +|+..|..+.|....
T Consensus        84 kvw~a~tgd---elhsf~-hkhivk~~af~~d--s~~lltgg~ekllrvfdln~p~-App~E~~-ghtg~Ir~v~wc~eD  155 (334)
T KOG0278|consen   84 KVWDAVTGD---ELHSFE-HKHIVKAVAFSQD--SNYLLTGGQEKLLRVFDLNRPK-APPKEIS-GHTGGIRTVLWCHED  155 (334)
T ss_pred             hhhhhhhhh---hhhhhh-hhheeeeEEeccc--chhhhccchHHHhhhhhccCCC-CCchhhc-CCCCcceeEEEeccC
Confidence            999976653   455665 9999999999988  4589999999999999987532 2334444 899999999998643


Q ss_pred             CCCceeecccCCCceeEEEeeCCCcEEEEEEecCccccccccccccCCCceeEEEeeCCCCCCccEEEEEecCCeEEEEE
Q 022111          162 APGALVGLGLLDPVQKLASCGCDNTVKVWKMYNGIWKMDCFPALQMHSDWVRSVAWAPNLGLPKSTIASASQDGTVVIWT  241 (302)
Q Consensus       162 ~~~~~~~~~~~~~~~~l~s~~~D~~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~l~s~s~D~~i~iwd  241 (302)
                                    +.|+|++.|++||+||.+++.    ..+++. -..+|+++-.++++     .+++.+..+.|++||
T Consensus       156 --------------~~iLSSadd~tVRLWD~rTgt----~v~sL~-~~s~VtSlEvs~dG-----~ilTia~gssV~Fwd  211 (334)
T KOG0278|consen  156 --------------KCILSSADDKTVRLWDHRTGT----EVQSLE-FNSPVTSLEVSQDG-----RILTIAYGSSVKFWD  211 (334)
T ss_pred             --------------ceEEeeccCCceEEEEeccCc----EEEEEe-cCCCCcceeeccCC-----CEEEEecCceeEEec
Confidence                          688999999999999999873    223322 35669999999985     477888999999999


Q ss_pred             eccCCcceeeeeecc--CCCcEEEEEEccCCCEEEEecCC-ceEEeeecCCceEEEe
Q 022111          242 CAKEGEQWEGRVLKD--FKTPVWSVSWSLTGNLLAVADAN-NVTLWKEAVDGEWQQV  295 (302)
Q Consensus       242 ~~~~~~~~~~~~~~~--~~~~v~~~~~spdg~~la~~~~d-~i~~w~~~~~~~~~~~  295 (302)
                      ...-+      +++.  ....|.+.+++|+..++++|+.| .++.||.......+..
T Consensus       212 aksf~------~lKs~k~P~nV~SASL~P~k~~fVaGged~~~~kfDy~TgeEi~~~  262 (334)
T KOG0278|consen  212 AKSFG------LLKSYKMPCNVESASLHPKKEFFVAGGEDFKVYKFDYNTGEEIGSY  262 (334)
T ss_pred             ccccc------ceeeccCccccccccccCCCceEEecCcceEEEEEeccCCceeeec
Confidence            87532      2333  34568899999999999999988 7999998776665553

>KOG0269 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.93  E-value=3.3e-25  Score=198.85  Aligned_cols=235  Identities=22%  Similarity=0.349  Sum_probs=178.5

Q ss_pred             EEEEc-cCCCEEEEeeCCCcEEEEeecCC-CceEEEEecCcccCeEEEEeeCCCCCCEEEEEeCCCeEEEEEcCCCCcee
Q 022111           16 DVAMD-FYGKRLATASSDSSIKIIGLSNS-ASQHLATLKGHRGPVWQVAWAHPKFGSILASCSYDGQVIIWKEGNQNDWT   93 (302)
Q Consensus        16 ~~~~s-~~~~~l~s~~~d~~v~lw~~~~~-~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~s~D~~i~iwd~~~~~~~~   93 (302)
                      ++.|. .+.++||+++..|.|.+||+... ..+.+..|..|+..|.++.|++ ..+.+|+|||.||+|++||++...   
T Consensus        92 DVkW~~~~~NlIAT~s~nG~i~vWdlnk~~rnk~l~~f~EH~Rs~~~ldfh~-tep~iliSGSQDg~vK~~DlR~~~---  167 (839)
T KOG0269|consen   92 DVKWGQLYSNLIATCSTNGVISVWDLNKSIRNKLLTVFNEHERSANKLDFHS-TEPNILISGSQDGTVKCWDLRSKK---  167 (839)
T ss_pred             hcccccchhhhheeecCCCcEEEEecCccccchhhhHhhhhccceeeeeecc-CCccEEEecCCCceEEEEeeeccc---
Confidence            34454 34689999999999999999642 1234567889999999999975 458899999999999999998753   


Q ss_pred             EEEEecCCCCCeeEEEecCCCCCcEEEEEecCCcEEEEEecCCCCeeeeeecccCCCCeEEEEeCCCCCCCceeecccCC
Q 022111           94 QAHTFNDHKSSVNSIAWAPHELGLSLACGSSDGNISVFTATADGGWDTTRIDQAHPVGVTSVSWAPAMAPGALVGLGLLD  173 (302)
Q Consensus        94 ~~~~~~~h~~~i~~l~~~pd~~~~~l~sg~~d~~v~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~  173 (302)
                      ...++.+..+.|+.+.|+|-. +..++++.+.|.+++||++....+. ..+ .+|..+|.++.|+|+.            
T Consensus       168 S~~t~~~nSESiRDV~fsp~~-~~~F~s~~dsG~lqlWDlRqp~r~~-~k~-~AH~GpV~c~nwhPnr------------  232 (839)
T KOG0269|consen  168 SKSTFRSNSESIRDVKFSPGY-GNKFASIHDSGYLQLWDLRQPDRCE-KKL-TAHNGPVLCLNWHPNR------------  232 (839)
T ss_pred             ccccccccchhhhceeeccCC-CceEEEecCCceEEEeeccCchhHH-HHh-hcccCceEEEeecCCC------------
Confidence            455677788999999999975 6789999999999999998543322 233 3899999999999953            


Q ss_pred             CceeEEEeeCCCcEEEEEEecCccccccccccccCCCceeEEEeeCCCCCCccEEEEEec--CCeEEEEEeccCCcceee
Q 022111          174 PVQKLASCGCDNTVKVWKMYNGIWKMDCFPALQMHSDWVRSVAWAPNLGLPKSTIASASQ--DGTVVIWTCAKEGEQWEG  251 (302)
Q Consensus       174 ~~~~l~s~~~D~~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~l~s~s~--D~~i~iwd~~~~~~~~~~  251 (302)
                        .+|||||.|++|+|||+.++....  ..+ ..-..+|.+|.|-|+.   ..+||+++.  |..|+|||++...-+  .
T Consensus       233 --~~lATGGRDK~vkiWd~t~~~~~~--~~t-InTiapv~rVkWRP~~---~~hLAtcsmv~dtsV~VWDvrRPYIP--~  302 (839)
T KOG0269|consen  233 --EWLATGGRDKMVKIWDMTDSRAKP--KHT-INTIAPVGRVKWRPAR---SYHLATCSMVVDTSVHVWDVRRPYIP--Y  302 (839)
T ss_pred             --ceeeecCCCccEEEEeccCCCccc--eeE-EeecceeeeeeeccCc---cchhhhhhccccceEEEEeecccccc--c
Confidence              799999999999999998653211  111 1124679999999985   478999885  889999999865433  2


Q ss_pred             eeeccCCCcEEEEEEcc-CCCEEEEecCC
Q 022111          252 RVLKDFKTPVWSVSWSL-TGNLLAVADAN  279 (302)
Q Consensus       252 ~~~~~~~~~v~~~~~sp-dg~~la~~~~d  279 (302)
                      .+..+|...+..++|-. |-..|.+++.|
T Consensus       303 ~t~~eH~~~vt~i~W~~~d~~~l~s~sKD  331 (839)
T KOG0269|consen  303 ATFLEHTDSVTGIAWDSGDRINLWSCSKD  331 (839)
T ss_pred             eeeeccCccccceeccCCCceeeEeecCc
Confidence            34467778888899943 22334444444

>KOG0270 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.93  E-value=2.3e-24  Score=182.67  Aligned_cols=236  Identities=21%  Similarity=0.322  Sum_probs=178.1

Q ss_pred             CCEEEEeeCCCcEEEEeecCCC-ceEEEE------------------ecCcccCeEEEEeeCCCCCCEEEEEeCCCeEEE
Q 022111           23 GKRLATASSDSSIKIIGLSNSA-SQHLAT------------------LKGHRGPVWQVAWAHPKFGSILASCSYDGQVII   83 (302)
Q Consensus        23 ~~~l~s~~~d~~v~lw~~~~~~-~~~~~~------------------~~~h~~~v~~v~~~~~~~~~~l~s~s~D~~i~i   83 (302)
                      |+++|.|..|..|.|||+.--. ..+..+                  ..+|+..|.+++|+.. .-++|||||.|.+|++
T Consensus       192 gNyvAiGtmdp~IeIWDLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n~~-~~nVLaSgsaD~TV~l  270 (463)
T KOG0270|consen  192 GNYVAIGTMDPEIEIWDLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWNRN-FRNVLASGSADKTVKL  270 (463)
T ss_pred             cceEEEeccCceeEEeccccccccccceeechhhhhhhhhhcccccccccchHHHHHHHhccc-cceeEEecCCCceEEE
Confidence            5799999999999999984110 111111                  2379999999998654 3579999999999999


Q ss_pred             EEcCCCCceeEEEEecCCCCCeeEEEecCCCCCcEEEEEecCCcEEEEEecCCCCeeeeeecccCCCCeEEEEeCCCCCC
Q 022111           84 WKEGNQNDWTQAHTFNDHKSSVNSIAWAPHELGLSLACGSSDGNISVFTATADGGWDTTRIDQAHPVGVTSVSWAPAMAP  163 (302)
Q Consensus        84 wd~~~~~~~~~~~~~~~h~~~i~~l~~~pd~~~~~l~sg~~d~~v~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~  163 (302)
                      ||+.+++   +..++..|.++|.++.|+|.. ...|++|+.|++|.++|.+..+... ...  .....|..+.|.|..  
T Consensus       271 WD~~~g~---p~~s~~~~~k~Vq~l~wh~~~-p~~LLsGs~D~~V~l~D~R~~~~s~-~~w--k~~g~VEkv~w~~~s--  341 (463)
T KOG0270|consen  271 WDVDTGK---PKSSITHHGKKVQTLEWHPYE-PSVLLSGSYDGTVALKDCRDPSNSG-KEW--KFDGEVEKVAWDPHS--  341 (463)
T ss_pred             EEcCCCC---cceehhhcCCceeEEEecCCC-ceEEEeccccceEEeeeccCccccC-ceE--EeccceEEEEecCCC--
Confidence            9998874   667788899999999999985 5789999999999999998422111 011  123568899999864  


Q ss_pred             CceeecccCCCceeEEEeeCCCcEEEEEEecCccccccccccccCCCceeEEEeeCCCCCCccEEEEEecCCeEEEEEec
Q 022111          164 GALVGLGLLDPVQKLASCGCDNTVKVWKMYNGIWKMDCFPALQMHSDWVRSVAWAPNLGLPKSTIASASQDGTVVIWTCA  243 (302)
Q Consensus       164 ~~~~~~~~~~~~~~l~s~~~D~~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~l~s~s~D~~i~iwd~~  243 (302)
                                 ...++.+..||+|+-+|+|...   +++.++..|.+.|.+|++++..   +.+++++|.|+.+++|++.
T Consensus       342 -----------e~~f~~~tddG~v~~~D~R~~~---~~vwt~~AHd~~ISgl~~n~~~---p~~l~t~s~d~~Vklw~~~  404 (463)
T KOG0270|consen  342 -----------ENSFFVSTDDGTVYYFDIRNPG---KPVWTLKAHDDEISGLSVNIQT---PGLLSTASTDKVVKLWKFD  404 (463)
T ss_pred             -----------ceeEEEecCCceEEeeecCCCC---CceeEEEeccCCcceEEecCCC---CcceeeccccceEEEEeec
Confidence                       2467788899999999999764   5567788999999999999875   6889999999999999987


Q ss_pred             cCCcceeeeeeccCC---CcEEEEEEccCCC-EEEEecCC-ceEEeeecCC
Q 022111          244 KEGEQWEGRVLKDFK---TPVWSVSWSLTGN-LLAVADAN-NVTLWKEAVD  289 (302)
Q Consensus       244 ~~~~~~~~~~~~~~~---~~v~~~~~spdg~-~la~~~~d-~i~~w~~~~~  289 (302)
                      ....    .....+.   +...+.++.|+-. .||.|+.+ .+++|+...+
T Consensus       405 ~~~~----~~v~~~~~~~~rl~c~~~~~~~a~~la~GG~k~~~~vwd~~~~  451 (463)
T KOG0270|consen  405 VDSP----KSVKEHSFKLGRLHCFALDPDVAFTLAFGGEKAVLRVWDIFTN  451 (463)
T ss_pred             CCCC----cccccccccccceeecccCCCcceEEEecCccceEEEeecccC
Confidence            5322    1112221   2356777888654 55677777 4999997543

>KOG0641 consensus WD40 repeat protein [General function prediction only]

Probab=99.93  E-value=1.4e-22  Score=158.63  Aligned_cols=247  Identities=19%  Similarity=0.304  Sum_probs=176.8

Q ss_pred             ccceeEEEEccCCCEEEEeeCCCcEEEEeec---------CCC-ce---EEEEecCcccCeEEEEeeCCCCCCEEEEEeC
Q 022111           11 EDTVHDVAMDFYGKRLATASSDSSIKIIGLS---------NSA-SQ---HLATLKGHRGPVWQVAWAHPKFGSILASCSY   77 (302)
Q Consensus        11 ~~~v~~~~~s~~~~~l~s~~~d~~v~lw~~~---------~~~-~~---~~~~~~~h~~~v~~v~~~~~~~~~~l~s~s~   77 (302)
                      +.+|.+++|+|.|...|.|+..+++||....         +.. .+   ..+.-+-|.+.|++.+|++.  |.+||+|+.
T Consensus        32 sqairav~fhp~g~lyavgsnskt~ric~yp~l~~~r~~hea~~~pp~v~~kr~khhkgsiyc~~ws~~--geliatgsn  109 (350)
T KOG0641|consen   32 SQAIRAVAFHPAGGLYAVGSNSKTFRICAYPALIDLRHAHEAAKQPPSVLCKRNKHHKGSIYCTAWSPC--GELIATGSN  109 (350)
T ss_pred             hhheeeEEecCCCceEEeccCCceEEEEccccccCcccccccccCCCeEEeeeccccCccEEEEEecCc--cCeEEecCC
Confidence            4578899999999999999999999987541         000 11   12233568999999999874  899999999


Q ss_pred             CCeEEEEEcCCC--CceeEEEEecCCCCCeeEEEecCC--CCCcEEEEEecCCcEEEEEecCCCCeeeeeecccCCCCeE
Q 022111           78 DGQVIIWKEGNQ--NDWTQAHTFNDHKSSVNSIAWAPH--ELGLSLACGSSDGNISVFTATADGGWDTTRIDQAHPVGVT  153 (302)
Q Consensus        78 D~~i~iwd~~~~--~~~~~~~~~~~h~~~i~~l~~~pd--~~~~~l~sg~~d~~v~~~~~~~~~~~~~~~~~~~h~~~v~  153 (302)
                      |++|++..++..  +.....-.|..|.+.|+.++|-.+  ..+.+|++++ .|-++||-...+.......+ .+|+.-|.
T Consensus       110 dk~ik~l~fn~dt~~~~g~dle~nmhdgtirdl~fld~~~s~~~il~s~g-agdc~iy~tdc~~g~~~~a~-sghtghil  187 (350)
T KOG0641|consen  110 DKTIKVLPFNADTCNATGHDLEFNMHDGTIRDLAFLDDPESGGAILASAG-AGDCKIYITDCGRGQGFHAL-SGHTGHIL  187 (350)
T ss_pred             CceEEEEecccccccccCcceeeeecCCceeeeEEecCCCcCceEEEecC-CCcceEEEeecCCCCcceee-cCCcccEE
Confidence            999999876432  111122357789999999999644  3345566554 44555554433222222333 37777776


Q ss_pred             EE-EeCCCCCCCceeecccCCCceeEEEeeCCCcEEEEEEecCcccccccccc----cc---CCCceeEEEeeCCCCCCc
Q 022111          154 SV-SWAPAMAPGALVGLGLLDPVQKLASCGCDNTVKVWKMYNGIWKMDCFPAL----QM---HSDWVRSVAWAPNLGLPK  225 (302)
Q Consensus       154 ~~-~~~~~~~~~~~~~~~~~~~~~~l~s~~~D~~v~iwd~~~~~~~~~~~~~~----~~---h~~~v~~v~~~p~~~~~~  225 (302)
                      ++ .|+                +..+++|+.|.+||+||++-+    .++.++    .+   ..+.|.+++..|.+    
T Consensus       188 alyswn----------------~~m~~sgsqdktirfwdlrv~----~~v~~l~~~~~~~glessavaav~vdpsg----  243 (350)
T KOG0641|consen  188 ALYSWN----------------GAMFASGSQDKTIRFWDLRVN----SCVNTLDNDFHDGGLESSAVAAVAVDPSG----  243 (350)
T ss_pred             EEEEec----------------CcEEEccCCCceEEEEeeecc----ceeeeccCcccCCCcccceeEEEEECCCc----
Confidence            64 454                467999999999999999854    233322    11   23679999999985    


Q ss_pred             cEEEEEecCCeEEEEEeccCCcceeeeeeccCCCcEEEEEEccCCCEEEEecCC-ceEEeeecC
Q 022111          226 STIASASQDGTVVIWTCAKEGEQWEGRVLKDFKTPVWSVSWSLTGNLLAVADAN-NVTLWKEAV  288 (302)
Q Consensus       226 ~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~la~~~~d-~i~~w~~~~  288 (302)
                      +.|++|-.|..+.+||++...-   ......|...|.++.|||...++.+++=| +|++-|...
T Consensus       244 rll~sg~~dssc~lydirg~r~---iq~f~phsadir~vrfsp~a~yllt~syd~~ikltdlqg  304 (350)
T KOG0641|consen  244 RLLASGHADSSCMLYDIRGGRM---IQRFHPHSADIRCVRFSPGAHYLLTCSYDMKIKLTDLQG  304 (350)
T ss_pred             ceeeeccCCCceEEEEeeCCce---eeeeCCCccceeEEEeCCCceEEEEecccceEEEeeccc
Confidence            8899999999999999986421   12235677889999999999999999888 899988754

>KOG0289 consensus mRNA splicing factor [General function prediction only]

Probab=99.93  E-value=2.4e-23  Score=176.11  Aligned_cols=247  Identities=21%  Similarity=0.317  Sum_probs=189.0

Q ss_pred             ccccccccceeEEEEccCCCEEEEeeCCCcEEEEeecCCCceEEEEecCcccCeEEEEeeCCCCCCEEEEEeCCCeEEEE
Q 022111            5 KIETGHEDTVHDVAMDFYGKRLATASSDSSIKIIGLSNSASQHLATLKGHRGPVWQVAWAHPKFGSILASCSYDGQVIIW   84 (302)
Q Consensus         5 ~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~s~D~~i~iw   84 (302)
                      +++.||...|+.+.|+++...+++++.|..|++|......  .......|+.+|+.+...+.  |.||++++.|++..+.
T Consensus       255 ~~~~Gh~kki~~v~~~~~~~~v~~aSad~~i~vws~~~~s--~~~~~~~h~~~V~~ls~h~t--geYllsAs~d~~w~Fs  330 (506)
T KOG0289|consen  255 ATLKGHTKKITSVKFHKDLDTVITASADEIIRVWSVPLSS--EPTSSRPHEEPVTGLSLHPT--GEYLLSASNDGTWAFS  330 (506)
T ss_pred             hhccCcceEEEEEEeccchhheeecCCcceEEeecccccc--CccccccccccceeeeeccC--CcEEEEecCCceEEEE
Confidence            3577999999999999999999999999999999874432  33456789999999998543  8999999999999999


Q ss_pred             EcCCCCceeEEEEecCCCCCeeEEEecCCCCCcEEEEEecCCcEEEEEecCCCCeeeeeecccCCCCeEEEEeCCCCCCC
Q 022111           85 KEGNQNDWTQAHTFNDHKSSVNSIAWAPHELGLSLACGSSDGNISVFTATADGGWDTTRIDQAHPVGVTSVSWAPAMAPG  164 (302)
Q Consensus        85 d~~~~~~~~~~~~~~~h~~~i~~l~~~pd~~~~~l~sg~~d~~v~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~  164 (302)
                      |++++...... .-....-.+++.+|+||  |.++++|..|+.+++||+....  ....+. +|+.+|+.++|+.+    
T Consensus       331 d~~~g~~lt~v-s~~~s~v~~ts~~fHpD--gLifgtgt~d~~vkiwdlks~~--~~a~Fp-ght~~vk~i~FsEN----  400 (506)
T KOG0289|consen  331 DISSGSQLTVV-SDETSDVEYTSAAFHPD--GLIFGTGTPDGVVKIWDLKSQT--NVAKFP-GHTGPVKAISFSEN----  400 (506)
T ss_pred             EccCCcEEEEE-eeccccceeEEeeEcCC--ceEEeccCCCceEEEEEcCCcc--ccccCC-CCCCceeEEEeccC----
Confidence            99877532211 11112235899999999  8899999999999999997654  334555 79999999999864    


Q ss_pred             ceeecccCCCceeEEEeeCCCcEEEEEEecCcccccccccccc-CCCceeEEEeeCCCCCCccEEEEEecCCeEEEEEec
Q 022111          165 ALVGLGLLDPVQKLASCGCDNTVKVWKMYNGIWKMDCFPALQM-HSDWVRSVAWAPNLGLPKSTIASASQDGTVVIWTCA  243 (302)
Q Consensus       165 ~~~~~~~~~~~~~l~s~~~D~~v~iwd~~~~~~~~~~~~~~~~-h~~~v~~v~~~p~~~~~~~~l~s~s~D~~i~iwd~~  243 (302)
                                |.+||+++.|+.|++||++.-.    .+.++.. ....|.+++|.+.|    .+|+.++.|  ++|+-+.
T Consensus       401 ----------GY~Lat~add~~V~lwDLRKl~----n~kt~~l~~~~~v~s~~fD~SG----t~L~~~g~~--l~Vy~~~  460 (506)
T KOG0289|consen  401 ----------GYWLATAADDGSVKLWDLRKLK----NFKTIQLDEKKEVNSLSFDQSG----TYLGIAGSD--LQVYICK  460 (506)
T ss_pred             ----------ceEEEEEecCCeEEEEEehhhc----ccceeeccccccceeEEEcCCC----CeEEeecce--eEEEEEe
Confidence                      5899999999999999998642    2233321 23368999998875    778888777  5555554


Q ss_pred             cCCcceeee-eeccCCCcEEEEEEccCCCEEEEecCC-ceEEee
Q 022111          244 KEGEQWEGR-VLKDFKTPVWSVSWSLTGNLLAVADAN-NVTLWK  285 (302)
Q Consensus       244 ~~~~~~~~~-~~~~~~~~v~~~~~spdg~~la~~~~d-~i~~w~  285 (302)
                      .....|... .+..+.+....+.|.....++++++.| .++++.
T Consensus       461 k~~k~W~~~~~~~~~sg~st~v~Fg~~aq~l~s~smd~~l~~~a  504 (506)
T KOG0289|consen  461 KKTKSWTEIKELADHSGLSTGVRFGEHAQYLASTSMDAILRLYA  504 (506)
T ss_pred             cccccceeeehhhhcccccceeeecccceEEeeccchhheEEee
Confidence            444456432 234566678899999999999999988 577664

>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.93  E-value=6.6e-24  Score=181.80  Aligned_cols=241  Identities=17%  Similarity=0.234  Sum_probs=183.7

Q ss_pred             ccceeEEEEccCC-CEEEEeeCCCcEEEEeecCCCceEEEEecCcccCeEEEEeeCCCCCCEEEEEeCCCeEEEEEcCCC
Q 022111           11 EDTVHDVAMDFYG-KRLATASSDSSIKIIGLSNSASQHLATLKGHRGPVWQVAWAHPKFGSILASCSYDGQVIIWKEGNQ   89 (302)
Q Consensus        11 ~~~v~~~~~s~~~-~~l~s~~~d~~v~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~s~D~~i~iwd~~~~   89 (302)
                      .+.|.+++|+|.- .-+|+++ ...|.||+...  .....++.--...|++++|..  +|++||.|...|.|+++|+.+.
T Consensus        26 ~~~vssl~fsp~~P~d~aVt~-S~rvqly~~~~--~~~~k~~srFk~~v~s~~fR~--DG~LlaaGD~sG~V~vfD~k~r  100 (487)
T KOG0310|consen   26 HNSVSSLCFSPKHPYDFAVTS-SVRVQLYSSVT--RSVRKTFSRFKDVVYSVDFRS--DGRLLAAGDESGHVKVFDMKSR  100 (487)
T ss_pred             cCcceeEecCCCCCCceEEec-ccEEEEEecch--hhhhhhHHhhccceeEEEeec--CCeEEEccCCcCcEEEeccccH
Confidence            4589999999853 3344333 45688988643  233444555567899999975  5999999999999999996542


Q ss_pred             CceeEEEEecCCCCCeeEEEecCCCCCcEEEEEecCCcEEEEEecCCCCeeeeeecccCCCCeEEEEeCCCCCCCceeec
Q 022111           90 NDWTQAHTFNDHKSSVNSIAWAPHELGLSLACGSSDGNISVFTATADGGWDTTRIDQAHPVGVTSVSWAPAMAPGALVGL  169 (302)
Q Consensus        90 ~~~~~~~~~~~h~~~i~~l~~~pd~~~~~l~sg~~d~~v~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~  169 (302)
                         ..+..+..|+.+|..+.|+|+. ++.+++|++|+.+++||+.+.. . ...+ .+|+..|.+.+|+|..        
T Consensus       101 ---~iLR~~~ah~apv~~~~f~~~d-~t~l~s~sDd~v~k~~d~s~a~-v-~~~l-~~htDYVR~g~~~~~~--------  165 (487)
T KOG0310|consen  101 ---VILRQLYAHQAPVHVTKFSPQD-NTMLVSGSDDKVVKYWDLSTAY-V-QAEL-SGHTDYVRCGDISPAN--------  165 (487)
T ss_pred             ---HHHHHHhhccCceeEEEecccC-CeEEEecCCCceEEEEEcCCcE-E-EEEe-cCCcceeEeeccccCC--------
Confidence               2455788899999999999985 6789999999999999997542 2 3344 4899999999999864        


Q ss_pred             ccCCCceeEEEeeCCCcEEEEEEecCccccccccccccCCCceeEEEeeCCCCCCccEEEEEecCCeEEEEEeccCCcce
Q 022111          170 GLLDPVQKLASCGCDNTVKVWKMYNGIWKMDCFPALQMHSDWVRSVAWAPNLGLPKSTIASASQDGTVVIWTCAKEGEQW  249 (302)
Q Consensus       170 ~~~~~~~~l~s~~~D~~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~l~s~s~D~~i~iwd~~~~~~~~  249 (302)
                           ...++|||.|+.||+||.+...   ..+.+ -.|..+|.++.|-|.+    ..||+++. ..+|+||+-.... .
T Consensus       166 -----~hivvtGsYDg~vrl~DtR~~~---~~v~e-lnhg~pVe~vl~lpsg----s~iasAgG-n~vkVWDl~~G~q-l  230 (487)
T KOG0310|consen  166 -----DHIVVTGSYDGKVRLWDTRSLT---SRVVE-LNHGCPVESVLALPSG----SLIASAGG-NSVKVWDLTTGGQ-L  230 (487)
T ss_pred             -----CeEEEecCCCceEEEEEeccCC---ceeEE-ecCCCceeeEEEcCCC----CEEEEcCC-CeEEEEEecCCce-e
Confidence                 3689999999999999998752   11222 2489999999999875    56777654 5699999975432 1


Q ss_pred             eeeeeccCCCcEEEEEEccCCCEEEEecCC-ceEEeeec
Q 022111          250 EGRVLKDFKTPVWSVSWSLTGNLLAVADAN-NVTLWKEA  287 (302)
Q Consensus       250 ~~~~~~~~~~~v~~~~~spdg~~la~~~~d-~i~~w~~~  287 (302)
                      ... ...|...|+++++..++..|++|+-| .+++|+..
T Consensus       231 l~~-~~~H~KtVTcL~l~s~~~rLlS~sLD~~VKVfd~t  268 (487)
T KOG0310|consen  231 LTS-MFNHNKTVTCLRLASDSTRLLSGSLDRHVKVFDTT  268 (487)
T ss_pred             hhh-hhcccceEEEEEeecCCceEeecccccceEEEEcc
Confidence            112 23477789999999999999999999 79999954

>KOG0269 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.93  E-value=2.2e-24  Score=193.62  Aligned_cols=256  Identities=19%  Similarity=0.346  Sum_probs=185.0

Q ss_pred             eeEEEEccCCCEEEEeeCCCcEEEEeecCCC--ceEEEEecCc---ccCeEEEEeeCCCCCCEEEEEeCCCeEEEEEcCC
Q 022111           14 VHDVAMDFYGKRLATASSDSSIKIIGLSNSA--SQHLATLKGH---RGPVWQVAWAHPKFGSILASCSYDGQVIIWKEGN   88 (302)
Q Consensus        14 v~~~~~s~~~~~l~s~~~d~~v~lw~~~~~~--~~~~~~~~~h---~~~v~~v~~~~~~~~~~l~s~s~D~~i~iwd~~~   88 (302)
                      ...|+..++...++.+|.. .++||.+....  .++...++.-   .-.+..|.|. ....++||||+..|.|.+||+..
T Consensus        42 ~nAIs~nr~~~qiv~AGrs-~lklyai~~~~~~~~~~~~~k~kqn~~~S~~DVkW~-~~~~NlIAT~s~nG~i~vWdlnk  119 (839)
T KOG0269|consen   42 ANAISVNRDINQIVVAGRS-LLKLYAINPNDFSEKCNHRFKTKQNKFYSAADVKWG-QLYSNLIATCSTNGVISVWDLNK  119 (839)
T ss_pred             cceEeecCCcceeEEeccc-ceeeEeeCcccCCcceeeecccccceeeehhhcccc-cchhhhheeecCCCcEEEEecCc
Confidence            4455666777777777644 56777764322  1111111111   1123457776 34578999999999999999976


Q ss_pred             CCceeEEEEecCCCCCeeEEEecCCCCCcEEEEEecCCcEEEEEecCCCCeeeeeecccCCCCeEEEEeCCCCCCCceee
Q 022111           89 QNDWTQAHTFNDHKSSVNSIAWAPHELGLSLACGSSDGNISVFTATADGGWDTTRIDQAHPVGVTSVSWAPAMAPGALVG  168 (302)
Q Consensus        89 ~~~~~~~~~~~~h~~~i~~l~~~pd~~~~~l~sg~~d~~v~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~  168 (302)
                      ..+-..+..|..|+-.+.+++|++.. ..+|++|+.|+.|++||++.........   +....|+.+.|+|..       
T Consensus       120 ~~rnk~l~~f~EH~Rs~~~ldfh~te-p~iliSGSQDg~vK~~DlR~~~S~~t~~---~nSESiRDV~fsp~~-------  188 (839)
T KOG0269|consen  120 SIRNKLLTVFNEHERSANKLDFHSTE-PNILISGSQDGTVKCWDLRSKKSKSTFR---SNSESIRDVKFSPGY-------  188 (839)
T ss_pred             cccchhhhHhhhhccceeeeeeccCC-ccEEEecCCCceEEEEeeeccccccccc---ccchhhhceeeccCC-------
Confidence            33334566788999999999999875 4689999999999999998654332221   456779999999964       


Q ss_pred             cccCCCceeEEEeeCCCcEEEEEEecCccccccccccccCCCceeEEEeeCCCCCCccEEEEEecCCeEEEEEeccCCcc
Q 022111          169 LGLLDPVQKLASCGCDNTVKVWKMYNGIWKMDCFPALQMHSDWVRSVAWAPNLGLPKSTIASASQDGTVVIWTCAKEGEQ  248 (302)
Q Consensus       169 ~~~~~~~~~l~s~~~D~~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~l~s~s~D~~i~iwd~~~~~~~  248 (302)
                            +..|+++...|++++||++...   .+...+.+|.++|.|+.|+|+.    .+||||+-|+.|+|||+......
T Consensus       189 ------~~~F~s~~dsG~lqlWDlRqp~---r~~~k~~AH~GpV~c~nwhPnr----~~lATGGRDK~vkiWd~t~~~~~  255 (839)
T KOG0269|consen  189 ------GNKFASIHDSGYLQLWDLRQPD---RCEKKLTAHNGPVLCLNWHPNR----EWLATGGRDKMVKIWDMTDSRAK  255 (839)
T ss_pred             ------CceEEEecCCceEEEeeccCch---hHHHHhhcccCceEEEeecCCC----ceeeecCCCccEEEEeccCCCcc
Confidence                  4689999999999999999764   4556788999999999999984    78999999999999999754322


Q ss_pred             eeeeeeccCCCcEEEEEEccCCCEE-EEecC--C-ceEEeeecCCceEEEeeecC
Q 022111          249 WEGRVLKDFKTPVWSVSWSLTGNLL-AVADA--N-NVTLWKEAVDGEWQQVSVVE  299 (302)
Q Consensus       249 ~~~~~~~~~~~~v~~~~~spdg~~l-a~~~~--d-~i~~w~~~~~~~~~~~~~~~  299 (302)
                      .  ...-.-..+|..|+|-|+..+. |+.+.  | .|++||+.  +++.|..+++
T Consensus       256 ~--~~tInTiapv~rVkWRP~~~~hLAtcsmv~dtsV~VWDvr--RPYIP~~t~~  306 (839)
T KOG0269|consen  256 P--KHTINTIAPVGRVKWRPARSYHLATCSMVVDTSVHVWDVR--RPYIPYATFL  306 (839)
T ss_pred             c--eeEEeecceeeeeeeccCccchhhhhhccccceEEEEeec--cccccceeee
Confidence            1  1112334689999999987544 44433  4 79999975  4676666554

>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]

Probab=99.92  E-value=2.1e-23  Score=173.04  Aligned_cols=220  Identities=20%  Similarity=0.284  Sum_probs=162.5

Q ss_pred             ccccccceeEEEEccCCCEEEEeeCCCcEEEEeecCCCceEEEEecCcccCeEEEEeeCCCCCCEEEEEeCCCeEEEEEc
Q 022111            7 ETGHEDTVHDVAMDFYGKRLATASSDSSIKIIGLSNSASQHLATLKGHRGPVWQVAWAHPKFGSILASCSYDGQVIIWKE   86 (302)
Q Consensus         7 ~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~s~D~~i~iwd~   86 (302)
                      ..+|++.|+++.|+.+|.+||||+.+|.|+||+.+.+..+  ..+..--..+.-++|.|  .+.+|+.|+.||.+-+|.+
T Consensus       102 ltgHKDSVt~~~FshdgtlLATGdmsG~v~v~~~stg~~~--~~~~~e~~dieWl~WHp--~a~illAG~~DGsvWmw~i  177 (399)
T KOG0296|consen  102 LTGHKDSVTCCSFSHDGTLLATGDMSGKVLVFKVSTGGEQ--WKLDQEVEDIEWLKWHP--RAHILLAGSTDGSVWMWQI  177 (399)
T ss_pred             ecCCCCceEEEEEccCceEEEecCCCccEEEEEcccCceE--EEeecccCceEEEEecc--cccEEEeecCCCcEEEEEC
Confidence            5699999999999999999999999999999998765432  33433334566788965  3899999999999999998


Q ss_pred             CCCCceeEEEEecCCCCCeeEEEecCCCCCcEEEEEecCCcEEEEEecCCCCeeeee-----------------------
Q 022111           87 GNQNDWTQAHTFNDHKSSVNSIAWAPHELGLSLACGSSDGNISVFTATADGGWDTTR-----------------------  143 (302)
Q Consensus        87 ~~~~~~~~~~~~~~h~~~i~~l~~~pd~~~~~l~sg~~d~~v~~~~~~~~~~~~~~~-----------------------  143 (302)
                      .+.   ...+.+.+|+.++++=.|.||  |++++++..|++|++|+..+..+.....                       
T Consensus       178 p~~---~~~kv~~Gh~~~ct~G~f~pd--GKr~~tgy~dgti~~Wn~ktg~p~~~~~~~e~~~~~~~~~~~~~~~~~~g~  252 (399)
T KOG0296|consen  178 PSQ---ALCKVMSGHNSPCTCGEFIPD--GKRILTGYDDGTIIVWNPKTGQPLHKITQAEGLELPCISLNLAGSTLTKGN  252 (399)
T ss_pred             CCc---ceeeEecCCCCCcccccccCC--CceEEEEecCceEEEEecCCCceeEEecccccCcCCccccccccceeEecc
Confidence            764   367789999999999999998  8899999999999999875432211000                       


Q ss_pred             -------------------------ecccCCCCeEEEEeCCCCCCCceeeccc---------------------------
Q 022111          144 -------------------------IDQAHPVGVTSVSWAPAMAPGALVGLGL---------------------------  171 (302)
Q Consensus       144 -------------------------~~~~h~~~v~~~~~~~~~~~~~~~~~~~---------------------------  171 (302)
                                               +...+...+.++.+.|....-.+.+++.                           
T Consensus       253 ~e~~~~~~~~~sgKVv~~~n~~~~~l~~~~e~~~esve~~~~ss~lpL~A~G~vdG~i~iyD~a~~~~R~~c~he~~V~~  332 (399)
T KOG0296|consen  253 SEGVACGVNNGSGKVVNCNNGTVPELKPSQEELDESVESIPSSSKLPLAACGSVDGTIAIYDLAASTLRHICEHEDGVTK  332 (399)
T ss_pred             CCccEEEEccccceEEEecCCCCccccccchhhhhhhhhcccccccchhhcccccceEEEEecccchhheeccCCCceEE
Confidence                                     0001111122222222111111111100                           


Q ss_pred             --CCCceeEEEeeCCCcEEEEEEecCccccccccccccCCCceeEEEeeCCCCCCccEEEEEecCCeEEEEEec
Q 022111          172 --LDPVQKLASCGCDNTVKVWKMYNGIWKMDCFPALQMHSDWVRSVAWAPNLGLPKSTIASASQDGTVVIWTCA  243 (302)
Q Consensus       172 --~~~~~~l~s~~~D~~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~l~s~s~D~~i~iwd~~  243 (302)
                        ..+..+|++++.+|.|++||.++++    ++.++.||...|.+++++|+.    +.++|+|.|++.+||++.
T Consensus       333 l~w~~t~~l~t~c~~g~v~~wDaRtG~----l~~~y~GH~~~Il~f~ls~~~----~~vvT~s~D~~a~VF~v~  398 (399)
T KOG0296|consen  333 LKWLNTDYLLTACANGKVRQWDARTGQ----LKFTYTGHQMGILDFALSPQK----RLVVTVSDDNTALVFEVP  398 (399)
T ss_pred             EEEcCcchheeeccCceEEeeeccccc----eEEEEecCchheeEEEEcCCC----cEEEEecCCCeEEEEecC
Confidence              0124679999999999999999984    556789999999999999995    889999999999999863

>KOG2096 consensus WD40 repeat protein [General function prediction only]

Probab=99.92  E-value=2.4e-23  Score=170.08  Aligned_cols=254  Identities=22%  Similarity=0.302  Sum_probs=170.5

Q ss_pred             ccccccceeEEEEccCCCEEEEeeCCCcEEEEeecCCCc---eEEE--EecCcccCeEEEEeeCCCCCCEEEEEeCCCeE
Q 022111            7 ETGHEDTVHDVAMDFYGKRLATASSDSSIKIIGLSNSAS---QHLA--TLKGHRGPVWQVAWAHPKFGSILASCSYDGQV   81 (302)
Q Consensus         7 ~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~lw~~~~~~~---~~~~--~~~~h~~~v~~v~~~~~~~~~~l~s~s~D~~i   81 (302)
                      +.||.+.|++++|+.||++||+++.|++||||++..-..   .++.  .-.+|.   +.+.|.|+ -..+++++-...++
T Consensus        82 LKgH~~~vt~~~FsSdGK~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~nve~dhp---T~V~FapD-c~s~vv~~~~g~~l  157 (420)
T KOG2096|consen   82 LKGHKKEVTDVAFSSDGKKLATISGDRSIRLWDVRDFENKEHRCIRQNVEYDHP---TRVVFAPD-CKSVVVSVKRGNKL  157 (420)
T ss_pred             hhccCCceeeeEEcCCCceeEEEeCCceEEEEecchhhhhhhhHhhccccCCCc---eEEEECCC-cceEEEEEccCCEE
Confidence            569999999999999999999999999999999843111   1111  112343   56789765 34578888888899


Q ss_pred             EEEEcCCCCceeE----EE----Ee-cCCCCCeeEEEecCCCCCcEEEEEecCCcEEEEEecCCCCeeeeeecccCCCCe
Q 022111           82 IIWKEGNQNDWTQ----AH----TF-NDHKSSVNSIAWAPHELGLSLACGSSDGNISVFTATADGGWDTTRIDQAHPVGV  152 (302)
Q Consensus        82 ~iwd~~~~~~~~~----~~----~~-~~h~~~i~~l~~~pd~~~~~l~sg~~d~~v~~~~~~~~~~~~~~~~~~~h~~~v  152 (302)
                      ++|.+........    ++    .| .-|.-.|-.+...  .++.+|++++.|..|.||++. +.  .+..+. ......
T Consensus       158 ~vyk~~K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGiA--~~~k~imsas~dt~i~lw~lk-Gq--~L~~id-tnq~~n  231 (420)
T KOG2096|consen  158 CVYKLVKKTDGSGSHHFVHIDNLEFERKHQVDIINIGIA--GNAKYIMSASLDTKICLWDLK-GQ--LLQSID-TNQSSN  231 (420)
T ss_pred             EEEEeeecccCCCCcccccccccccchhcccceEEEeec--CCceEEEEecCCCcEEEEecC-Cc--eeeeec-cccccc
Confidence            9998743211000    00    01 1133344444333  347899999999999999986 21  111221 111223


Q ss_pred             EEEEeCCCCCCCceeecccCCCceeEEEeeCCCcEEEEEEe---cC-ccccccccccccCCCceeEEEeeCCCCCCccEE
Q 022111          153 TSVSWAPAMAPGALVGLGLLDPVQKLASCGCDNTVKVWKMY---NG-IWKMDCFPALQMHSDWVRSVAWAPNLGLPKSTI  228 (302)
Q Consensus       153 ~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~D~~v~iwd~~---~~-~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~l  228 (302)
                      ...+.+|+              |+++++++...-|++|.+-   .+ .+.......+.||.+.|..++|+|+.    ..+
T Consensus       232 ~~aavSP~--------------GRFia~~gFTpDVkVwE~~f~kdG~fqev~rvf~LkGH~saV~~~aFsn~S----~r~  293 (420)
T KOG2096|consen  232 YDAAVSPD--------------GRFIAVSGFTPDVKVWEPIFTKDGTFQEVKRVFSLKGHQSAVLAAAFSNSS----TRA  293 (420)
T ss_pred             cceeeCCC--------------CcEEEEecCCCCceEEEEEeccCcchhhhhhhheeccchhheeeeeeCCCc----cee
Confidence            34445554              6899999999999999973   22 12233345688999999999999985    789


Q ss_pred             EEEecCCeEEEEEeccCCcc-eeeeeeccC-------CCcEEEEEEccCCCEEEEecCCceEEeeecC
Q 022111          229 ASASQDGTVVIWTCAKEGEQ-WEGRVLKDF-------KTPVWSVSWSLTGNLLAVADANNVTLWKEAV  288 (302)
Q Consensus       229 ~s~s~D~~i~iwd~~~~~~~-~~~~~~~~~-------~~~v~~~~~spdg~~la~~~~d~i~~w~~~~  288 (302)
                      +|.|.||++||||.+-+... ....+++.+       .+.-..+++||.|+.||++....++++....
T Consensus       294 vtvSkDG~wriwdtdVrY~~~qDpk~Lk~g~~pl~aag~~p~RL~lsP~g~~lA~s~gs~l~~~~se~  361 (420)
T KOG2096|consen  294 VTVSKDGKWRIWDTDVRYEAGQDPKILKEGSAPLHAAGSEPVRLELSPSGDSLAVSFGSDLKVFASED  361 (420)
T ss_pred             EEEecCCcEEEeeccceEecCCCchHhhcCCcchhhcCCCceEEEeCCCCcEEEeecCCceEEEEccc
Confidence            99999999999998653211 011222222       2233379999999999999877899987654

>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]

Probab=99.92  E-value=2.6e-23  Score=184.78  Aligned_cols=269  Identities=23%  Similarity=0.354  Sum_probs=195.9

Q ss_pred             ccccccceeEEEEccCCC---EEEEeeCCCcEEEEeecCCCceEEEEecCcccCeEEEEeeCCCCCCEEEEE-eCCCeEE
Q 022111            7 ETGHEDTVHDVAMDFYGK---RLATASSDSSIKIIGLSNSASQHLATLKGHRGPVWQVAWAHPKFGSILASC-SYDGQVI   82 (302)
Q Consensus         7 ~~~h~~~v~~~~~s~~~~---~l~s~~~d~~v~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~-s~D~~i~   82 (302)
                      ..||..+|+++.+-|+.+   +|+||+.|+.|++|.+.......+.++.+|...+.++.  .   ...+.++ +.|+++.
T Consensus        50 l~GH~a~VnC~~~l~~s~~~a~~vsG~sD~~v~lW~l~~~~~~~i~~~~g~~~~~~cv~--a---~~~~~~~~~ad~~v~  124 (764)
T KOG1063|consen   50 LDGHVARVNCVHWLPTSEIVAEMVSGDSDGRVILWKLRDEYLIKIYTIQGHCKECVCVV--A---RSSVMTCKAADGTVS  124 (764)
T ss_pred             ccCCccceEEEEEcccccccceEEEccCCCcEEEEEEeehheEEEEeecCcceeEEEEE--e---eeeEEEeeccCceEE
Confidence            569999999999998877   89999999999999998555667888988877665553  2   2233444 7899999


Q ss_pred             EEEcCCCCceeEEEEecCCCCC--eeEEEecCCCCCcEEEEEecCCcEEEEEecCCCCeee-eeecccCCCCeEEEEeCC
Q 022111           83 IWKEGNQNDWTQAHTFNDHKSS--VNSIAWAPHELGLSLACGSSDGNISVFTATADGGWDT-TRIDQAHPVGVTSVSWAP  159 (302)
Q Consensus        83 iwd~~~~~~~~~~~~~~~h~~~--i~~l~~~pd~~~~~l~sg~~d~~v~~~~~~~~~~~~~-~~~~~~h~~~v~~~~~~~  159 (302)
                      +||.+..+ ..+.+.+..-...  ..|+++.|+..-..+|.|+.+..|.+|....+ .+.. ..+ .+|...|.+++|..
T Consensus       125 vw~~~~~e-~~~~~~~rf~~k~~ipLcL~~~~~~~~~lla~Ggs~~~v~~~s~~~d-~f~~v~el-~GH~DWIrsl~f~~  201 (764)
T KOG1063|consen  125 VWDKQQDE-VFLLAVLRFEIKEAIPLCLAALKNNKTFLLACGGSKFVVDLYSSSAD-SFARVAEL-EGHTDWIRSLAFAR  201 (764)
T ss_pred             EeecCCCc-eeeehheehhhhhHhhHHHhhhccCCcEEEEecCcceEEEEeccCCc-ceeEEEEe-eccchhhhhhhhhc
Confidence            99984332 1233333322222  34666677544457888888889999866533 3332 344 49999999999976


Q ss_pred             CCCCCceeecccCCCceeEEEeeCCCcEEEEEEecCc-----------------cccccc----------cccccCCCce
Q 022111          160 AMAPGALVGLGLLDPVQKLASCGCDNTVKVWKMYNGI-----------------WKMDCF----------PALQMHSDWV  212 (302)
Q Consensus       160 ~~~~~~~~~~~~~~~~~~l~s~~~D~~v~iwd~~~~~-----------------~~~~~~----------~~~~~h~~~v  212 (302)
                      .+.           +..+|||+|+|.+||||.+.-..                 ..+.+.          ..+.||++||
T Consensus       202 ~~~-----------~~~~laS~SQD~yIRiW~i~~~~~~~~~~~e~~~t~~~~~~~f~~l~~i~~~is~eall~GHeDWV  270 (764)
T KOG1063|consen  202 LGG-----------DDLLLASSSQDRYIRIWRIVLGDDEDSNEREDSLTTLSNLPVFMILEEIQYRISFEALLMGHEDWV  270 (764)
T ss_pred             cCC-----------CcEEEEecCCceEEEEEEEEecCCccccccccccccccCCceeeeeeeEEEEEehhhhhcCcccce
Confidence            542           23689999999999999985321                 001111          1245999999


Q ss_pred             eEEEeeCCCCCCccEEEEEecCCeEEEEEeccCCcceeeeeec----cCCCcEEEEEEccCCCEEEEecCC-ceEEeeec
Q 022111          213 RSVAWAPNLGLPKSTIASASQDGTVVIWTCAKEGEQWEGRVLK----DFKTPVWSVSWSLTGNLLAVADAN-NVTLWKEA  287 (302)
Q Consensus       213 ~~v~~~p~~~~~~~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~----~~~~~v~~~~~spdg~~la~~~~d-~i~~w~~~  287 (302)
                      +++.|+|.+    ..|+|+|.|+++.+|...++...|...+..    +.....|+.-|+|+++.+++-+.- +.++|+..
T Consensus       271 ~sv~W~p~~----~~LLSASaDksmiiW~pd~~tGiWv~~vRlGe~gg~a~GF~g~lw~~n~~~ii~~g~~Gg~hlWkt~  346 (764)
T KOG1063|consen  271 YSVWWHPEG----LDLLSASADKSMIIWKPDENTGIWVDVVRLGEVGGSAGGFWGGLWSPNSNVIIAHGRTGGFHLWKTK  346 (764)
T ss_pred             EEEEEccch----hhheecccCcceEEEecCCccceEEEEEEeecccccccceeeEEEcCCCCEEEEecccCcEEEEecc
Confidence            999999985    679999999999999988776667544322    223458999999999888776665 79999987


Q ss_pred             CCceEEEeeec
Q 022111          288 VDGEWQQVSVV  298 (302)
Q Consensus       288 ~~~~~~~~~~~  298 (302)
                      +.+.|.+.+++
T Consensus       347 d~~~w~~~~~i  357 (764)
T KOG1063|consen  347 DKTFWTQEPVI  357 (764)
T ss_pred             Cccceeecccc
Confidence            78889887765

>KOG0646 consensus WD40 repeat protein [General function prediction only]

Probab=99.92  E-value=1.5e-23  Score=178.82  Aligned_cols=229  Identities=19%  Similarity=0.237  Sum_probs=177.1

Q ss_pred             ccceeEEEEccCCCEEEEeeCCCcEEEEeecCCCceEEEEecCcccCeEEEEeeCCCCCCEEEEEeCCCeEEEEEcCC--
Q 022111           11 EDTVHDVAMDFYGKRLATASSDSSIKIIGLSNSASQHLATLKGHRGPVWQVAWAHPKFGSILASCSYDGQVIIWKEGN--   88 (302)
Q Consensus        11 ~~~v~~~~~s~~~~~l~s~~~d~~v~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~s~D~~i~iwd~~~--   88 (302)
                      .++|.++.-+|+|.+|+.|+..+.+++|.++++  ..+..+.+|-..|+++.|+.  +|.+++|||.||.|++|.+.+  
T Consensus        81 Pg~v~al~s~n~G~~l~ag~i~g~lYlWelssG--~LL~v~~aHYQ~ITcL~fs~--dgs~iiTgskDg~V~vW~l~~lv  156 (476)
T KOG0646|consen   81 PGPVHALASSNLGYFLLAGTISGNLYLWELSSG--ILLNVLSAHYQSITCLKFSD--DGSHIITGSKDGAVLVWLLTDLV  156 (476)
T ss_pred             ccceeeeecCCCceEEEeecccCcEEEEEeccc--cHHHHHHhhccceeEEEEeC--CCcEEEecCCCccEEEEEEEeec
Confidence            457899999999999998889999999999764  45667789999999999985  489999999999999998621  


Q ss_pred             ----CCceeEEEEecCCCCCeeEEEecCCCCCcEEEEEecCCcEEEEEecCCCCeeeeeecccCCCCeEEEEeCCCCCCC
Q 022111           89 ----QNDWTQAHTFNDHKSSVNSIAWAPHELGLSLACGSSDGNISVFTATADGGWDTTRIDQAHPVGVTSVSWAPAMAPG  164 (302)
Q Consensus        89 ----~~~~~~~~~~~~h~~~i~~l~~~pd~~~~~l~sg~~d~~v~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~  164 (302)
                          .....+.+.|..|.-+|+++...+-....+|+|+|.|.++++||+..+.- . ..+  ..+..+.++..+|..   
T Consensus       157 ~a~~~~~~~p~~~f~~HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g~L-L-lti--~fp~si~av~lDpae---  229 (476)
T KOG0646|consen  157 SADNDHSVKPLHIFSDHTLSITDLQIGSGGTNARLYTASEDRTIKLWDLSLGVL-L-LTI--TFPSSIKAVALDPAE---  229 (476)
T ss_pred             ccccCCCccceeeeccCcceeEEEEecCCCccceEEEecCCceEEEEEecccee-e-EEE--ecCCcceeEEEcccc---
Confidence                11235778899999999999887653345899999999999999975422 1 121  235667888887764   


Q ss_pred             ceeecccCCCceeEEEeeCCCcEEEEEEecCc------------cccccccccccCCC--ceeEEEeeCCCCCCccEEEE
Q 022111          165 ALVGLGLLDPVQKLASCGCDNTVKVWKMYNGI------------WKMDCFPALQMHSD--WVRSVAWAPNLGLPKSTIAS  230 (302)
Q Consensus       165 ~~~~~~~~~~~~~l~s~~~D~~v~iwd~~~~~------------~~~~~~~~~~~h~~--~v~~v~~~p~~~~~~~~l~s  230 (302)
                                 ..+..|+.+|.|.+.++....            ...+.+..+.||.+  .|+|++.+-|+    +.|++
T Consensus       230 -----------~~~yiGt~~G~I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~~~Gh~~~~~ITcLais~Dg----tlLlS  294 (476)
T KOG0646|consen  230 -----------RVVYIGTEEGKIFQNLLFKLSGQSAGVNQKGRHEENTQINVLVGHENESAITCLAISTDG----TLLLS  294 (476)
T ss_pred             -----------cEEEecCCcceEEeeehhcCCcccccccccccccccceeeeeccccCCcceeEEEEecCc----cEEEe
Confidence                       789999999999998875321            01123456789988  99999999885    88999


Q ss_pred             EecCCeEEEEEeccCCcceeeeeeccCCCcEEEEEEcc
Q 022111          231 ASQDGTVVIWTCAKEGEQWEGRVLKDFKTPVWSVSWSL  268 (302)
Q Consensus       231 ~s~D~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp  268 (302)
                      |+.||.++|||+.+..-   -+.+....++|..+.+.|
T Consensus       295 Gd~dg~VcvWdi~S~Q~---iRtl~~~kgpVtnL~i~~  329 (476)
T KOG0646|consen  295 GDEDGKVCVWDIYSKQC---IRTLQTSKGPVTNLQINP  329 (476)
T ss_pred             eCCCCCEEEEecchHHH---HHHHhhhccccceeEeec
Confidence            99999999999976421   122233567788887755

>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.92  E-value=4.3e-23  Score=182.39  Aligned_cols=232  Identities=27%  Similarity=0.407  Sum_probs=178.7

Q ss_pred             EEEccCCCEEEEeeCCCcEEEEeecCCCceEEEEecCcccCeEEEEeeCCCCCCEEEEEeCCCeEEEEEcCCCCceeEEE
Q 022111           17 VAMDFYGKRLATASSDSSIKIIGLSNSASQHLATLKGHRGPVWQVAWAHPKFGSILASCSYDGQVIIWKEGNQNDWTQAH   96 (302)
Q Consensus        17 ~~~s~~~~~l~s~~~d~~v~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~s~D~~i~iwd~~~~~~~~~~~   96 (302)
                      +.|+. ...||. +.+..|++|+-..+....+..+  +...|+++.|+++  |.+||.|..+|.+.|||..+.+   .+.
T Consensus       183 ldWss-~n~laV-alg~~vylW~~~s~~v~~l~~~--~~~~vtSv~ws~~--G~~LavG~~~g~v~iwD~~~~k---~~~  253 (484)
T KOG0305|consen  183 LDWSS-ANVLAV-ALGQSVYLWSASSGSVTELCSF--GEELVTSVKWSPD--GSHLAVGTSDGTVQIWDVKEQK---KTR  253 (484)
T ss_pred             hhccc-CCeEEE-EecceEEEEecCCCceEEeEec--CCCceEEEEECCC--CCEEEEeecCCeEEEEehhhcc---ccc
Confidence            44553 335554 4577899999766543444444  3788999999864  8999999999999999987653   445


Q ss_pred             EecC-CCCCeeEEEecCCCCCcEEEEEecCCcEEEEEecCCCCeeeeeecccCCCCeEEEEeCCCCCCCceeecccCCCc
Q 022111           97 TFND-HKSSVNSIAWAPHELGLSLACGSSDGNISVFTATADGGWDTTRIDQAHPVGVTSVSWAPAMAPGALVGLGLLDPV  175 (302)
Q Consensus        97 ~~~~-h~~~i~~l~~~pd~~~~~l~sg~~d~~v~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~  175 (302)
                      ++.+ |...|.+++|+.    ..+.+|+.|+.|..+|++.....  ....++|...|..++|++++              
T Consensus       254 ~~~~~h~~rvg~laW~~----~~lssGsr~~~I~~~dvR~~~~~--~~~~~~H~qeVCgLkws~d~--------------  313 (484)
T KOG0305|consen  254 TLRGSHASRVGSLAWNS----SVLSSGSRDGKILNHDVRISQHV--VSTLQGHRQEVCGLKWSPDG--------------  313 (484)
T ss_pred             cccCCcCceeEEEeccC----ceEEEecCCCcEEEEEEecchhh--hhhhhcccceeeeeEECCCC--------------
Confidence            6667 999999999983    37999999999999999854322  12235899999999999974              


Q ss_pred             eeEEEeeCCCcEEEEEEecCccccccccccccCCCceeEEEeeCCCCCCccEEEEEe--cCCeEEEEEeccCCcceeeee
Q 022111          176 QKLASCGCDNTVKVWKMYNGIWKMDCFPALQMHSDWVRSVAWAPNLGLPKSTIASAS--QDGTVVIWTCAKEGEQWEGRV  253 (302)
Q Consensus       176 ~~l~s~~~D~~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~l~s~s--~D~~i~iwd~~~~~~~~~~~~  253 (302)
                      .+||||+.|+.+.|||....    .....+..|...|..++|+|-.   ...||+|+  .|++|++||......    .-
T Consensus       314 ~~lASGgnDN~~~Iwd~~~~----~p~~~~~~H~aAVKA~awcP~q---~~lLAsGGGs~D~~i~fwn~~~g~~----i~  382 (484)
T KOG0305|consen  314 NQLASGGNDNVVFIWDGLSP----EPKFTFTEHTAAVKALAWCPWQ---SGLLATGGGSADRCIKFWNTNTGAR----ID  382 (484)
T ss_pred             CeeccCCCccceEeccCCCc----cccEEEeccceeeeEeeeCCCc---cCceEEcCCCcccEEEEEEcCCCcE----ec
Confidence            89999999999999999544    3345678999999999999953   46788875  699999999875321    11


Q ss_pred             eccCCCcEEEEEEccCCCEEEEecC---CceEEeeecC
Q 022111          254 LKDFKTPVWSVSWSLTGNLLAVADA---NNVTLWKEAV  288 (302)
Q Consensus       254 ~~~~~~~v~~~~~spdg~~la~~~~---d~i~~w~~~~  288 (302)
                      ..+-...|.+|.|++..+.|+++.+   +.|+||+...
T Consensus       383 ~vdtgsQVcsL~Wsk~~kEi~sthG~s~n~i~lw~~ps  420 (484)
T KOG0305|consen  383 SVDTGSQVCSLIWSKKYKELLSTHGYSENQITLWKYPS  420 (484)
T ss_pred             ccccCCceeeEEEcCCCCEEEEecCCCCCcEEEEeccc
Confidence            1344678999999999988877744   3699999854

>KOG1274 consensus WD40 repeat protein [General function prediction only]

Probab=99.92  E-value=1.7e-22  Score=184.67  Aligned_cols=248  Identities=19%  Similarity=0.262  Sum_probs=184.5

Q ss_pred             cccccceeEEEEccCCCEEEEeeCCCcEEEEeecCCCceEEEEecCcccCeEEEEeeCCCCCCEEEEEeCCCeEEEEEcC
Q 022111            8 TGHEDTVHDVAMDFYGKRLATASSDSSIKIIGLSNSASQHLATLKGHRGPVWQVAWAHPKFGSILASCSYDGQVIIWKEG   87 (302)
Q Consensus         8 ~~h~~~v~~~~~s~~~~~l~s~~~d~~v~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~s~D~~i~iwd~~   87 (302)
                      .+|+...+.++|.++|++|.+++.|+.|++|+....... ..++..|...|.+++-.    +++|++|+.+++|.+|.+.
T Consensus        10 yaht~G~t~i~~d~~gefi~tcgsdg~ir~~~~~sd~e~-P~ti~~~g~~v~~ia~~----s~~f~~~s~~~tv~~y~fp   84 (933)
T KOG1274|consen   10 YAHTGGLTLICYDPDGEFICTCGSDGDIRKWKTNSDEEE-PETIDISGELVSSIACY----SNHFLTGSEQNTVLRYKFP   84 (933)
T ss_pred             hhccCceEEEEEcCCCCEEEEecCCCceEEeecCCcccC-CchhhccCceeEEEeec----ccceEEeeccceEEEeeCC
Confidence            489999999999999999999999999999986433111 12333377778877642    5689999999999999987


Q ss_pred             CCCceeEEEEecCCCCCeeEEEecCCCCCcEEEEEecCCcEEEEEecCCCCeeeeeecccCCCCeEEEEeCCCCCCCcee
Q 022111           88 NQNDWTQAHTFNDHKSSVNSIAWAPHELGLSLACGSSDGNISVFTATADGGWDTTRIDQAHPVGVTSVSWAPAMAPGALV  167 (302)
Q Consensus        88 ~~~~~~~~~~~~~h~~~i~~l~~~pd~~~~~l~sg~~d~~v~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~  167 (302)
                      ++.....+.   ..+.++++++|+-+  |.++|.||+|-.|++-++.+.+..  ..++ +|..+|.++.|+|.+      
T Consensus        85 s~~~~~iL~---Rftlp~r~~~v~g~--g~~iaagsdD~~vK~~~~~D~s~~--~~lr-gh~apVl~l~~~p~~------  150 (933)
T KOG1274|consen   85 SGEEDTILA---RFTLPIRDLAVSGS--GKMIAAGSDDTAVKLLNLDDSSQE--KVLR-GHDAPVLQLSYDPKG------  150 (933)
T ss_pred             CCCccceee---eeeccceEEEEecC--CcEEEeecCceeEEEEeccccchh--eeec-ccCCceeeeeEcCCC------
Confidence            654322333   34578999999876  789999999999999877644322  2333 899999999999864      


Q ss_pred             ecccCCCceeEEEeeCCCcEEEEEEecCccccc--c-ccccccC-CCceeEEEeeCCCCCCccEEEEEecCCeEEEEEec
Q 022111          168 GLGLLDPVQKLASCGCDNTVKVWKMYNGIWKMD--C-FPALQMH-SDWVRSVAWAPNLGLPKSTIASASQDGTVVIWTCA  243 (302)
Q Consensus       168 ~~~~~~~~~~l~s~~~D~~v~iwd~~~~~~~~~--~-~~~~~~h-~~~v~~v~~~p~~~~~~~~l~s~s~D~~i~iwd~~  243 (302)
                              .+||+.+.||.|++||+.++.....  - ......- ...+..++|+|++    .+++..+.|+.|++++..
T Consensus       151 --------~fLAvss~dG~v~iw~~~~~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~----g~la~~~~d~~Vkvy~r~  218 (933)
T KOG1274|consen  151 --------NFLAVSSCDGKVQIWDLQDGILSKTLTGVDKDNEFILSRICTRLAWHPKG----GTLAVPPVDNTVKVYSRK  218 (933)
T ss_pred             --------CEEEEEecCceEEEEEcccchhhhhcccCCccccccccceeeeeeecCCC----CeEEeeccCCeEEEEccC
Confidence                    7999999999999999987632111  0 0111111 3445679999995    678999999999999875


Q ss_pred             cCCcceeeeee-ccCCCcEEEEEEccCCCEEEEecCC-ceEEeeecC
Q 022111          244 KEGEQWEGRVL-KDFKTPVWSVSWSLTGNLLAVADAN-NVTLWKEAV  288 (302)
Q Consensus       244 ~~~~~~~~~~~-~~~~~~v~~~~~spdg~~la~~~~d-~i~~w~~~~  288 (302)
                      .-...  ..+. ..+...+..++|||+|+|||+++-| .|.||+...
T Consensus       219 ~we~~--f~Lr~~~~ss~~~~~~wsPnG~YiAAs~~~g~I~vWnv~t  263 (933)
T KOG1274|consen  219 GWELQ--FKLRDKLSSSKFSDLQWSPNGKYIAASTLDGQILVWNVDT  263 (933)
T ss_pred             Cceeh--eeecccccccceEEEEEcCCCcEEeeeccCCcEEEEeccc
Confidence            42111  1222 2334458899999999999999988 699999864

>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]

Probab=99.92  E-value=2.6e-23  Score=179.26  Aligned_cols=247  Identities=19%  Similarity=0.310  Sum_probs=177.4

Q ss_pred             cceeEEEEccCCCEEEEeeCCCcEEEEeecCCCc-eE---------EEEecCcccCeEEEEeeCCCCCCEEEEEeCCCeE
Q 022111           12 DTVHDVAMDFYGKRLATASSDSSIKIIGLSNSAS-QH---------LATLKGHRGPVWQVAWAHPKFGSILASCSYDGQV   81 (302)
Q Consensus        12 ~~v~~~~~s~~~~~l~s~~~d~~v~lw~~~~~~~-~~---------~~~~~~h~~~v~~v~~~~~~~~~~l~s~s~D~~i   81 (302)
                      -.|.++.|++.|..|++.+-....+|+|...... ++         ....+||.+.+++.+|.|. .-..+.||+.|+++
T Consensus       215 h~i~sl~ys~Tg~~iLvvsg~aqakl~DRdG~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~-~k~~FlT~s~Dgtl  293 (641)
T KOG0772|consen  215 HQINSLQYSVTGDQILVVSGSAQAKLLDRDGFEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPD-NKEEFLTCSYDGTL  293 (641)
T ss_pred             cccceeeecCCCCeEEEEecCcceeEEccCCceeeeeeccchhhhhhhccCCceeeeeccccccC-cccceEEecCCCcE
Confidence            3588899999999888888889999999754221 11         1234799999999999765 35678899999999


Q ss_pred             EEEEcCCCCceeEEEEec-----CCCCCeeEEEecCCCCCcEEEEEecCCcEEEEEecCCCCeeeeeecccCCC--CeEE
Q 022111           82 IIWKEGNQNDWTQAHTFN-----DHKSSVNSIAWAPHELGLSLACGSSDGNISVFTATADGGWDTTRIDQAHPV--GVTS  154 (302)
Q Consensus        82 ~iwd~~~~~~~~~~~~~~-----~h~~~i~~l~~~pd~~~~~l~sg~~d~~v~~~~~~~~~~~~~~~~~~~h~~--~v~~  154 (302)
                      ||||+++...  ..+.+.     +..-+++.|+|+||  |..+|+|..||.|.+|+......-....+..+|..  .|++
T Consensus       294 RiWdv~~~k~--q~qVik~k~~~g~Rv~~tsC~~nrd--g~~iAagc~DGSIQ~W~~~~~~v~p~~~vk~AH~~g~~Its  369 (641)
T KOG0772|consen  294 RIWDVNNTKS--QLQVIKTKPAGGKRVPVTSCAWNRD--GKLIAAGCLDGSIQIWDKGSRTVRPVMKVKDAHLPGQDITS  369 (641)
T ss_pred             EEEecCCchh--heeEEeeccCCCcccCceeeecCCC--cchhhhcccCCceeeeecCCcccccceEeeeccCCCCceeE
Confidence            9999976542  333332     23347789999998  77899999999999999753322222345567866  7999


Q ss_pred             EEeCCCCCCCceeecccCCCceeEEEeeCCCcEEEEEEecCccccccccccccC--CCceeEEEeeCCCCCCccEEEEEe
Q 022111          155 VSWAPAMAPGALVGLGLLDPVQKLASCGCDNTVKVWKMYNGIWKMDCFPALQMH--SDWVRSVAWAPNLGLPKSTIASAS  232 (302)
Q Consensus       155 ~~~~~~~~~~~~~~~~~~~~~~~l~s~~~D~~v~iwd~~~~~~~~~~~~~~~~h--~~~v~~v~~~p~~~~~~~~l~s~s  232 (302)
                      +.|+++              |++|+|-|.|+++++||++....   ++....+-  ...-+.++|||+.    ..|++|+
T Consensus       370 i~FS~d--------------g~~LlSRg~D~tLKvWDLrq~kk---pL~~~tgL~t~~~~tdc~FSPd~----kli~TGt  428 (641)
T KOG0772|consen  370 ISFSYD--------------GNYLLSRGFDDTLKVWDLRQFKK---PLNVRTGLPTPFPGTDCCFSPDD----KLILTGT  428 (641)
T ss_pred             EEeccc--------------cchhhhccCCCceeeeecccccc---chhhhcCCCccCCCCccccCCCc----eEEEecc
Confidence            999986              48999999999999999987542   23333321  2234678999985    6788874


Q ss_pred             ------cCCeEEEEEeccCCcceeeeeeccC-CCcEEEEEEccCCCEEEEecCC-ceEE-eeecC
Q 022111          233 ------QDGTVVIWTCAKEGEQWEGRVLKDF-KTPVWSVSWSLTGNLLAVADAN-NVTL-WKEAV  288 (302)
Q Consensus       233 ------~D~~i~iwd~~~~~~~~~~~~~~~~-~~~v~~~~~spdg~~la~~~~d-~i~~-w~~~~  288 (302)
                            ..+++.+||..+-...  ..+  ++ ...|-.+.|+|-=++|.+++.| ++++ ||.+.
T Consensus       429 S~~~~~~~g~L~f~d~~t~d~v--~ki--~i~~aSvv~~~WhpkLNQi~~gsgdG~~~vyYdp~~  489 (641)
T KOG0772|consen  429 SAPNGMTAGTLFFFDRMTLDTV--YKI--DISTASVVRCLWHPKLNQIFAGSGDGTAHVYYDPNE  489 (641)
T ss_pred             cccCCCCCceEEEEeccceeeE--EEe--cCCCceEEEEeecchhhheeeecCCCceEEEECccc
Confidence                  3457889987643211  111  22 3458889999988888888777 6666 55443

>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]

Probab=99.92  E-value=5e-23  Score=164.51  Aligned_cols=212  Identities=22%  Similarity=0.336  Sum_probs=166.6

Q ss_pred             cccccccceeEEEEccCCCEEEEeeCCCcEEEEeecCCCceEEEEecCcccCeEEEEeeCCCCCCEEEEEe-----CCCe
Q 022111            6 IETGHEDTVHDVAMDFYGKRLATASSDSSIKIIGLSNSASQHLATLKGHRGPVWQVAWAHPKFGSILASCS-----YDGQ   80 (302)
Q Consensus         6 ~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~s-----~D~~   80 (302)
                      ++.||+++|+++..+.+.++|++|+.|.+++|||+..  ++++.+++- ..+|..+.|+..  |++++.+.     .-+.
T Consensus        47 ty~GHtGavW~~Did~~s~~liTGSAD~t~kLWDv~t--Gk~la~~k~-~~~Vk~~~F~~~--gn~~l~~tD~~mg~~~~  121 (327)
T KOG0643|consen   47 TYDGHTGAVWCCDIDWDSKHLITGSADQTAKLWDVET--GKQLATWKT-NSPVKRVDFSFG--GNLILASTDKQMGYTCF  121 (327)
T ss_pred             eecCCCceEEEEEecCCcceeeeccccceeEEEEcCC--CcEEEEeec-CCeeEEEeeccC--CcEEEEEehhhcCcceE
Confidence            4679999999999999999999999999999999976  456666653 457999999864  67765553     3567


Q ss_pred             EEEEEcCCCC----ceeEEEEecCCCCCeeEEEecCCCCCcEEEEEecCCcEEEEEecCCCCeeeeeecccCCCCeEEEE
Q 022111           81 VIIWKEGNQN----DWTQAHTFNDHKSSVNSIAWAPHELGLSLACGSSDGNISVFTATADGGWDTTRIDQAHPVGVTSVS  156 (302)
Q Consensus        81 i~iwd~~~~~----~~~~~~~~~~h~~~i~~l~~~pd~~~~~l~sg~~d~~v~~~~~~~~~~~~~~~~~~~h~~~v~~~~  156 (302)
                      |.++|++...    .-.+...+..+..+|+.+.|.|-  +..|++|..||.|..||.+++.  .+......|...|+.+.
T Consensus       122 v~~fdi~~~~~~~~s~ep~~kI~t~~skit~a~Wg~l--~~~ii~Ghe~G~is~~da~~g~--~~v~s~~~h~~~Ind~q  197 (327)
T KOG0643|consen  122 VSVFDIRDDSSDIDSEEPYLKIPTPDSKITSALWGPL--GETIIAGHEDGSISIYDARTGK--ELVDSDEEHSSKINDLQ  197 (327)
T ss_pred             EEEEEccCChhhhcccCceEEecCCccceeeeeeccc--CCEEEEecCCCcEEEEEcccCc--eeeechhhhcccccccc
Confidence            8999987432    12346667778899999999997  6799999999999999998643  22333346888999999


Q ss_pred             eCCCCCCCceeecccCCCceeEEEeeCCCcEEEEEEecCc-----------------------------c----------
Q 022111          157 WAPAMAPGALVGLGLLDPVQKLASCGCDNTVKVWKMYNGI-----------------------------W----------  197 (302)
Q Consensus       157 ~~~~~~~~~~~~~~~~~~~~~l~s~~~D~~v~iwd~~~~~-----------------------------~----------  197 (302)
                      ++|+.              .++++++.|.+-++||+.+-.                             .          
T Consensus       198 ~s~d~--------------T~FiT~s~Dttakl~D~~tl~v~Kty~te~PvN~aaisP~~d~VilgGGqeA~dVTTT~~r  263 (327)
T KOG0643|consen  198 FSRDR--------------TYFITGSKDTTAKLVDVRTLEVLKTYTTERPVNTAAISPLLDHVILGGGQEAMDVTTTSTR  263 (327)
T ss_pred             ccCCc--------------ceEEecccCccceeeeccceeeEEEeeecccccceecccccceEEecCCceeeeeeeeccc
Confidence            99875              789999999999999975420                             0          


Q ss_pred             --cc----------ccccccccCCCceeEEEeeCCCCCCccEEEEEecCCeEEEEEecc
Q 022111          198 --KM----------DCFPALQMHSDWVRSVAWAPNLGLPKSTIASASQDGTVVIWTCAK  244 (302)
Q Consensus       198 --~~----------~~~~~~~~h~~~v~~v~~~p~~~~~~~~l~s~s~D~~i~iwd~~~  244 (302)
                        ++          +.+...+||=++|++|+|+|+|    ...+||++||.||+--.+.
T Consensus       264 ~GKFEArFyh~i~eEEigrvkGHFGPINsvAfhPdG----ksYsSGGEDG~VR~h~Fd~  318 (327)
T KOG0643|consen  264 AGKFEARFYHLIFEEEIGRVKGHFGPINSVAFHPDG----KSYSSGGEDGYVRLHHFDS  318 (327)
T ss_pred             ccchhhhHHHHHHHHHhccccccccCcceeEECCCC----cccccCCCCceEEEEEecc
Confidence              00          1123467999999999999996    6799999999999986654

>KOG1407 consensus WD40 repeat protein [Function unknown]

Probab=99.92  E-value=2.2e-23  Score=166.02  Aligned_cols=214  Identities=21%  Similarity=0.390  Sum_probs=160.7

Q ss_pred             EEecCcccCeEEEEeeCCCCCCEEEEEeCCCeEEEEEcCCCCceeEEEEecCCCCCeeEEEecCCCCCcEEEEEecCCcE
Q 022111           49 ATLKGHRGPVWQVAWAHPKFGSILASCSYDGQVIIWKEGNQNDWTQAHTFNDHKSSVNSIAWAPHELGLSLACGSSDGNI  128 (302)
Q Consensus        49 ~~~~~h~~~v~~v~~~~~~~~~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~h~~~i~~l~~~pd~~~~~l~sg~~d~~v  128 (302)
                      ..+.+|.+.|.+|+|+.+  |..|++++.|+++++|.+... .........+|.+.|..++|.|.. ..++++++.|++|
T Consensus        14 r~~~~~~~~v~Sv~wn~~--g~~lasgs~dktv~v~n~e~~-r~~~~~~~~gh~~svdql~w~~~~-~d~~atas~dk~i   89 (313)
T KOG1407|consen   14 RELQGHVQKVHSVAWNCD--GTKLASGSFDKTVSVWNLERD-RFRKELVYRGHTDSVDQLCWDPKH-PDLFATASGDKTI   89 (313)
T ss_pred             HHhhhhhhcceEEEEccc--CceeeecccCCceEEEEecch-hhhhhhcccCCCcchhhheeCCCC-CcceEEecCCceE
Confidence            345789999999999864  899999999999999998654 222234567899999999999875 3579999999999


Q ss_pred             EEEEecCCCCeeeeeecccCCCCeEEEEeCCCCCCCceeecccCCCceeEEEeeCCCcEEEEEEecCc------------
Q 022111          129 SVFTATADGGWDTTRIDQAHPVGVTSVSWAPAMAPGALVGLGLLDPVQKLASCGCDNTVKVWKMYNGI------------  196 (302)
Q Consensus       129 ~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~D~~v~iwd~~~~~------------  196 (302)
                      ++||.+...+......    ...-.-+.|+|++              ++++.++.|..|.+.|.++.+            
T Consensus        90 r~wd~r~~k~~~~i~~----~~eni~i~wsp~g--------------~~~~~~~kdD~it~id~r~~~~~~~~~~~~e~n  151 (313)
T KOG1407|consen   90 RIWDIRSGKCTARIET----KGENINITWSPDG--------------EYIAVGNKDDRITFIDARTYKIVNEEQFKFEVN  151 (313)
T ss_pred             EEEEeccCcEEEEeec----cCcceEEEEcCCC--------------CEEEEecCcccEEEEEecccceeehhcccceee
Confidence            9999987654332221    2223456788864              566677777777777754321            


Q ss_pred             -------------------------cccccccccccCCCceeEEEeeCCCCCCccEEEEEecCCeEEEEEeccCCcceee
Q 022111          197 -------------------------WKMDCFPALQMHSDWVRSVAWAPNLGLPKSTIASASQDGTVVIWTCAKEGEQWEG  251 (302)
Q Consensus       197 -------------------------~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~l~s~s~D~~i~iwd~~~~~~~~~~  251 (302)
                                               ..++.+.+++.|...-.||.|+|+|    ++||+||.|..+.+||++..   ...
T Consensus       152 e~~w~~~nd~Fflt~GlG~v~ILsypsLkpv~si~AH~snCicI~f~p~G----ryfA~GsADAlvSLWD~~EL---iC~  224 (313)
T KOG1407|consen  152 EISWNNSNDLFFLTNGLGCVEILSYPSLKPVQSIKAHPSNCICIEFDPDG----RYFATGSADALVSLWDVDEL---ICE  224 (313)
T ss_pred             eeeecCCCCEEEEecCCceEEEEeccccccccccccCCcceEEEEECCCC----ceEeeccccceeeccChhHh---hhh
Confidence                                     0123456678899888999999996    88999999999999999752   122


Q ss_pred             eeeccCCCcEEEEEEccCCCEEEEecCC-ce---------EEeeecCCce
Q 022111          252 RVLKDFKTPVWSVSWSLTGNLLAVADAN-NV---------TLWKEAVDGE  291 (302)
Q Consensus       252 ~~~~~~~~~v~~~~~spdg~~la~~~~d-~i---------~~w~~~~~~~  291 (302)
                      +....+.=||..++||.||++||+|+.| .|         ++|+++.+++
T Consensus       225 R~isRldwpVRTlSFS~dg~~lASaSEDh~IDIA~vetGd~~~eI~~~~~  274 (313)
T KOG1407|consen  225 RCISRLDWPVRTLSFSHDGRMLASASEDHFIDIAEVETGDRVWEIPCEGP  274 (313)
T ss_pred             eeeccccCceEEEEeccCcceeeccCccceEEeEecccCCeEEEeeccCC
Confidence            3445566789999999999999999998 45         6777765554

>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.92  E-value=5.2e-24  Score=188.01  Aligned_cols=251  Identities=19%  Similarity=0.326  Sum_probs=193.2

Q ss_pred             ccccccccceeEEEEccCCCEEEEeeCCCcEEEEeecCCCceEEEEecCcccCeEEEEeeCCCCCCEEEEEeCCCeEEEE
Q 022111            5 KIETGHEDTVHDVAMDFYGKRLATASSDSSIKIIGLSNSASQHLATLKGHRGPVWQVAWAHPKFGSILASCSYDGQVIIW   84 (302)
Q Consensus         5 ~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~s~D~~i~iw   84 (302)
                      ..++.|.+.|.++.+--+++.|.|+|.|.+|++|+......-+..++..|++.|.++++.. ++..++||||-|+.|.+|
T Consensus        67 asme~HsDWVNDiiL~~~~~tlIS~SsDtTVK~W~~~~~~~~c~stir~H~DYVkcla~~a-k~~~lvaSgGLD~~IflW  145 (735)
T KOG0308|consen   67 ASMEHHSDWVNDIILCGNGKTLISASSDTTVKVWNAHKDNTFCMSTIRTHKDYVKCLAYIA-KNNELVASGGLDRKIFLW  145 (735)
T ss_pred             hhhhhhHhHHhhHHhhcCCCceEEecCCceEEEeecccCcchhHhhhhcccchheeeeecc-cCceeEEecCCCccEEEE
Confidence            3466899999999988899999999999999999986543345677889999999999843 346799999999999999


Q ss_pred             EcCCCCc-------eeEEEEec-CCCCCeeEEEecCCCCCcEEEEEecCCcEEEEEecCCCCeeeeeecccCCCCeEEEE
Q 022111           85 KEGNQND-------WTQAHTFN-DHKSSVNSIAWAPHELGLSLACGSSDGNISVFTATADGGWDTTRIDQAHPVGVTSVS  156 (302)
Q Consensus        85 d~~~~~~-------~~~~~~~~-~h~~~i~~l~~~pd~~~~~l~sg~~d~~v~~~~~~~~~~~~~~~~~~~h~~~v~~~~  156 (302)
                      |++.+..       ......+. ++...|.+++-++.  |..+++|+..+-+++||-++..  ....+. +|+..|..+.
T Consensus       146 Din~~~~~l~~s~n~~t~~sl~sG~k~siYSLA~N~t--~t~ivsGgtek~lr~wDprt~~--kimkLr-GHTdNVr~ll  220 (735)
T KOG0308|consen  146 DINTGTATLVASFNNVTVNSLGSGPKDSIYSLAMNQT--GTIIVSGGTEKDLRLWDPRTCK--KIMKLR-GHTDNVRVLL  220 (735)
T ss_pred             EccCcchhhhhhccccccccCCCCCccceeeeecCCc--ceEEEecCcccceEEecccccc--ceeeee-ccccceEEEE
Confidence            9976521       11222334 78999999999876  7799999999999999987543  334555 9999999998


Q ss_pred             eCCCCCCCceeecccCCCceeEEEeeCCCcEEEEEEecCccccccccccccCCCceeEEEeeCCCCCCccEEEEEecCCe
Q 022111          157 WAPAMAPGALVGLGLLDPVQKLASCGCDNTVKVWKMYNGIWKMDCFPALQMHSDWVRSVAWAPNLGLPKSTIASASQDGT  236 (302)
Q Consensus       157 ~~~~~~~~~~~~~~~~~~~~~l~s~~~D~~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~l~s~s~D~~  236 (302)
                      .+++              |++++|+|.|++|++||+...    .|+.++..|++.|.++..+|+.    .++-+|+.||.
T Consensus       221 ~~dD--------------Gt~~ls~sSDgtIrlWdLgqQ----rCl~T~~vH~e~VWaL~~~~sf----~~vYsG~rd~~  278 (735)
T KOG0308|consen  221 VNDD--------------GTRLLSASSDGTIRLWDLGQQ----RCLATYIVHKEGVWALQSSPSF----THVYSGGRDGN  278 (735)
T ss_pred             EcCC--------------CCeEeecCCCceEEeeecccc----ceeeeEEeccCceEEEeeCCCc----ceEEecCCCCc
Confidence            7765              589999999999999999754    6888999999999999999986    78999999999


Q ss_pred             EEEEEeccCCcceeeeeeccCCCcEEEEEEccCCCEEEEecCC-ceEEeee
Q 022111          237 VVIWTCAKEGEQWEGRVLKDFKTPVWSVSWSLTGNLLAVADAN-NVTLWKE  286 (302)
Q Consensus       237 i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~la~~~~d-~i~~w~~  286 (302)
                      |..=|++... ..  .++-....+|..+..+...+-+=++.-| .|+.|..
T Consensus       279 i~~Tdl~n~~-~~--tlick~daPv~~l~~~~~~~~~WvtTtds~I~rW~~  326 (735)
T KOG0308|consen  279 IYRTDLRNPA-KS--TLICKEDAPVLKLHLHEHDNSVWVTTTDSSIKRWKL  326 (735)
T ss_pred             EEecccCCch-hh--eEeecCCCchhhhhhccccCCceeeeccccceecCC
Confidence            9998887531 11  1122223455555555333333333344 5777764

>KOG0300 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.91  E-value=7.8e-23  Score=167.14  Aligned_cols=251  Identities=22%  Similarity=0.273  Sum_probs=189.5

Q ss_pred             cccccccceeEEEEccCCCEEEEeeCCCcEEEEee------cC---------C----------------------C-ceE
Q 022111            6 IETGHEDTVHDVAMDFYGKRLATASSDSSIKIIGL------SN---------S----------------------A-SQH   47 (302)
Q Consensus         6 ~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~lw~~------~~---------~----------------------~-~~~   47 (302)
                      .+.||.+.|+++.|++.+.++++++-|++..||..      -.         +                      . ..+
T Consensus       185 ~Y~GH~GSVNsikfh~s~~L~lTaSGD~taHIW~~av~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~tiRvP  264 (481)
T KOG0300|consen  185 TYTGHTGSVNSIKFHNSGLLLLTASGDETAHIWKAAVNWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHTIRVP  264 (481)
T ss_pred             eecccccceeeEEeccccceEEEccCCcchHHHHHhhcCcCCCCCCCCCCCchhhhhcccccccccccccccCCceeeee
Confidence            47899999999999999999999999999999982      00         0                      0 023


Q ss_pred             EEEecCcccCeEEEEeeCCCCCCEEEEEeCCCeEEEEEcCCCCceeEEEEecCCCCCeeEEEecCCCCCcEEEEEecCCc
Q 022111           48 LATLKGHRGPVWQVAWAHPKFGSILASCSYDGQVIIWKEGNQNDWTQAHTFNDHKSSVNSIAWAPHELGLSLACGSSDGN  127 (302)
Q Consensus        48 ~~~~~~h~~~v~~v~~~~~~~~~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~h~~~i~~l~~~pd~~~~~l~sg~~d~~  127 (302)
                      +..|.+|.+.|.+..|-.  .|+.++++|+|++..+||++++   ..++.+.+|....+.++-+|.+  .++++.+.|.+
T Consensus       265 l~~ltgH~~vV~a~dWL~--gg~Q~vTaSWDRTAnlwDVEtg---e~v~~LtGHd~ELtHcstHptQ--rLVvTsSrDtT  337 (481)
T KOG0300|consen  265 LMRLTGHRAVVSACDWLA--GGQQMVTASWDRTANLWDVETG---EVVNILTGHDSELTHCSTHPTQ--RLVVTSSRDTT  337 (481)
T ss_pred             eeeeeccccceEehhhhc--CcceeeeeeccccceeeeeccC---ceeccccCcchhccccccCCcc--eEEEEeccCce
Confidence            556789999999888864  3889999999999999999886   4788899999999999999974  58999999999


Q ss_pred             EEEEEecCCCCeeeeeecccCCCCeEEEEeCCCCCCCceeecccCCCceeEEEeeCCCcEEEEEEecCcccccccccccc
Q 022111          128 ISVFTATADGGWDTTRIDQAHPVGVTSVSWAPAMAPGALVGLGLLDPVQKLASCGCDNTVKVWKMYNGIWKMDCFPALQM  207 (302)
Q Consensus       128 v~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~D~~v~iwd~~~~~~~~~~~~~~~~  207 (302)
                      .++||.+..  +.....-++|...|++..|..+               ..+++|+.|.+|+|||+++-...   +.++ -
T Consensus       338 FRLWDFRea--I~sV~VFQGHtdtVTS~vF~~d---------------d~vVSgSDDrTvKvWdLrNMRsp---lATI-R  396 (481)
T KOG0300|consen  338 FRLWDFREA--IQSVAVFQGHTDTVTSVVFNTD---------------DRVVSGSDDRTVKVWDLRNMRSP---LATI-R  396 (481)
T ss_pred             eEeccchhh--cceeeeecccccceeEEEEecC---------------CceeecCCCceEEEeeeccccCc---ceee-e
Confidence            999999853  2223333699999999999764               57999999999999999864322   2222 1


Q ss_pred             CCCceeEEEeeCCCCCCccEEEEEecCCeEEEEEeccCCcceeeee-eccCCCcEEEEEEccC---CCEEEEecCCceEE
Q 022111          208 HSDWVRSVAWAPNLGLPKSTIASASQDGTVVIWTCAKEGEQWEGRV-LKDFKTPVWSVSWSLT---GNLLAVADANNVTL  283 (302)
Q Consensus       208 h~~~v~~v~~~p~~~~~~~~l~s~s~D~~i~iwd~~~~~~~~~~~~-~~~~~~~v~~~~~spd---g~~la~~~~d~i~~  283 (302)
                      -.++++.++.+--.    ..||---+++.||+||+......+.++. ..+|.--|.+++|..+   .+++.+|-+..+.=
T Consensus       397 tdS~~NRvavs~g~----~iIAiPhDNRqvRlfDlnG~RlaRlPrtsRqgHrRMV~c~AW~eehp~cnLftcGFDR~v~g  472 (481)
T KOG0300|consen  397 TDSPANRVAVSKGH----PIIAIPHDNRQVRLFDLNGNRLARLPRTSRQGHRRMVTCCAWLEEHPACNLFTCGFDRMVAG  472 (481)
T ss_pred             cCCccceeEeecCC----ceEEeccCCceEEEEecCCCccccCCcccccccceeeeeeeccccCcccccccccccceeee
Confidence            35668888877532    4566667778899999976432222211 2456666999999743   46666665446777


Q ss_pred             eeecC
Q 022111          284 WKEAV  288 (302)
Q Consensus       284 w~~~~  288 (302)
                      |++..
T Consensus       473 W~in~  477 (481)
T KOG0300|consen  473 WKINT  477 (481)
T ss_pred             eEecc
Confidence            88754

>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]

Probab=99.91  E-value=1e-22  Score=189.12  Aligned_cols=220  Identities=23%  Similarity=0.391  Sum_probs=162.7

Q ss_pred             cccccceeEEEEccCCCEEEEeeCCCcEEEEeecC----------------CCceEEEEecCcccCeEEEEeeCCCCCCE
Q 022111            8 TGHEDTVHDVAMDFYGKRLATASSDSSIKIIGLSN----------------SASQHLATLKGHRGPVWQVAWAHPKFGSI   71 (302)
Q Consensus         8 ~~h~~~v~~~~~s~~~~~l~s~~~d~~v~lw~~~~----------------~~~~~~~~~~~h~~~v~~v~~~~~~~~~~   71 (302)
                      ..|.+.|+++.|++||++||+||+|+.|.||....                +..+.+..+.+|+..|..++|+|+  +.+
T Consensus        66 ~~h~~sv~CVR~S~dG~~lAsGSDD~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp~--~~~  143 (942)
T KOG0973|consen   66 DDHDGSVNCVRFSPDGSYLASGSDDRLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSPD--DSL  143 (942)
T ss_pred             ccccCceeEEEECCCCCeEeeccCcceEEEeeecccCCcccccccccccccceeeEEEEEecCCCccceeccCCC--ccE
Confidence            47999999999999999999999999999998762                012356778999999999999874  789


Q ss_pred             EEEEeCCCeEEEEEcCCCCceeEEEEecCCCCCeeEEEecCCCCCcEEEEEecCCcEEEEEecCCCCeeeeeecccC---
Q 022111           72 LASCSYDGQVIIWKEGNQNDWTQAHTFNDHKSSVNSIAWAPHELGLSLACGSSDGNISVFTATADGGWDTTRIDQAH---  148 (302)
Q Consensus        72 l~s~s~D~~i~iwd~~~~~~~~~~~~~~~h~~~i~~l~~~pd~~~~~l~sg~~d~~v~~~~~~~~~~~~~~~~~~~h---  148 (302)
                      |||+|.|.+|.||+..+-   ..++++.+|...|..+.|-|-  |+++|+-++|++|++|...+   |.+......+   
T Consensus       144 lvS~s~DnsViiwn~~tF---~~~~vl~~H~s~VKGvs~DP~--Gky~ASqsdDrtikvwrt~d---w~i~k~It~pf~~  215 (942)
T KOG0973|consen  144 LVSVSLDNSVIIWNAKTF---ELLKVLRGHQSLVKGVSWDPI--GKYFASQSDDRTLKVWRTSD---WGIEKSITKPFEE  215 (942)
T ss_pred             EEEecccceEEEEccccc---eeeeeeecccccccceEECCc--cCeeeeecCCceEEEEEccc---ceeeEeeccchhh
Confidence            999999999999987654   578889999999999999886  88999999999999998543   2221110011   


Q ss_pred             ---CCCeEEEEeCCCCCC----------Cceeec-------------c--------------cCCC--------c----e
Q 022111          149 ---PVGVTSVSWAPAMAP----------GALVGL-------------G--------------LLDP--------V----Q  176 (302)
Q Consensus       149 ---~~~v~~~~~~~~~~~----------~~~~~~-------------~--------------~~~~--------~----~  176 (302)
                         .--...+.|+|++.-          .....+             +              +-.+        .    -
T Consensus       216 ~~~~T~f~RlSWSPDG~~las~nA~n~~~~~~~IieR~tWk~~~~LvGH~~p~evvrFnP~lfe~~~~ng~~~~~~~~y~  295 (942)
T KOG0973|consen  216 SPLTTFFLRLSWSPDGHHLASPNAVNGGKSTIAIIERGTWKVDKDLVGHSAPVEVVRFNPKLFERNNKNGTSTQPNCYYC  295 (942)
T ss_pred             CCCcceeeecccCCCcCeecchhhccCCcceeEEEecCCceeeeeeecCCCceEEEEeChHHhccccccCCccCCCcceE
Confidence               112566777776520          000000             0              0001        1    2


Q ss_pred             eEEEeeCCCcEEEEEEecCccccccccccccCCCceeEEEeeCCCCCCccEEEEEecCCeEEEEEecc
Q 022111          177 KLASCGCDNTVKVWKMYNGIWKMDCFPALQMHSDWVRSVAWAPNLGLPKSTIASASQDGTVVIWTCAK  244 (302)
Q Consensus       177 ~l~s~~~D~~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~l~s~s~D~~i~iwd~~~  244 (302)
                      .+|+||.|+.|-||...... .+-.+..+  ....|.+++|+|||    -.|..+|.||+|.+.....
T Consensus       296 i~AvgSqDrSlSVW~T~~~R-Pl~vi~~l--f~~SI~DmsWspdG----~~LfacS~DGtV~~i~Fee  356 (942)
T KOG0973|consen  296 IAAVGSQDRSLSVWNTALPR-PLFVIHNL--FNKSIVDMSWSPDG----FSLFACSLDGTVALIHFEE  356 (942)
T ss_pred             EEEEecCCccEEEEecCCCC-chhhhhhh--hcCceeeeeEcCCC----CeEEEEecCCeEEEEEcch
Confidence            68899999999999874331 11112222  34569999999996    7799999999999998864

>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]

Probab=99.91  E-value=2.2e-23  Score=170.76  Aligned_cols=242  Identities=22%  Similarity=0.285  Sum_probs=189.1

Q ss_pred             cccccceeEEEEccCCCEEEEeeCCCcEEEEeecCCCceEEEEec-CcccCeEEEEeeCCCCCCEEEEEeCCCeEEEEEc
Q 022111            8 TGHEDTVHDVAMDFYGKRLATASSDSSIKIIGLSNSASQHLATLK-GHRGPVWQVAWAHPKFGSILASCSYDGQVIIWKE   86 (302)
Q Consensus         8 ~~h~~~v~~~~~s~~~~~l~s~~~d~~v~lw~~~~~~~~~~~~~~-~h~~~v~~v~~~~~~~~~~l~s~s~D~~i~iwd~   86 (302)
                      --|.++|.+++|+.|..+||+|+.||+|++|.+.+  +.++..|. +|+..|++++|+.+  +..+.+++.|.++||--+
T Consensus       260 MMmd~aVlci~FSRDsEMlAsGsqDGkIKvWri~t--G~ClRrFdrAHtkGvt~l~FSrD--~SqiLS~sfD~tvRiHGl  335 (508)
T KOG0275|consen  260 MMMDDAVLCISFSRDSEMLASGSQDGKIKVWRIET--GQCLRRFDRAHTKGVTCLSFSRD--NSQILSASFDQTVRIHGL  335 (508)
T ss_pred             eecccceEEEeecccHHHhhccCcCCcEEEEEEec--chHHHHhhhhhccCeeEEEEccC--cchhhcccccceEEEecc
Confidence            34788999999999999999999999999999976  45666664 89999999999864  677889999999999988


Q ss_pred             CCCCceeEEEEecCCCCCeeEEEecCCCCCcEEEEEecCCcEEEEEecCCCCeeeeeecccCCCCeEEEEeCCCCCCCce
Q 022111           87 GNQNDWTQAHTFNDHKSSVNSIAWAPHELGLSLACGSSDGNISVFTATADGGWDTTRIDQAHPVGVTSVSWAPAMAPGAL  166 (302)
Q Consensus        87 ~~~~~~~~~~~~~~h~~~i~~l~~~pd~~~~~l~sg~~d~~v~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~  166 (302)
                      .++   ++++.+.+|...|+...|.+|  |..+++++.|++|++|+..+..+....... +...+|.++-.-|..     
T Consensus       336 KSG---K~LKEfrGHsSyvn~a~ft~d--G~~iisaSsDgtvkvW~~KtteC~~Tfk~~-~~d~~vnsv~~~PKn-----  404 (508)
T KOG0275|consen  336 KSG---KCLKEFRGHSSYVNEATFTDD--GHHIISASSDGTVKVWHGKTTECLSTFKPL-GTDYPVNSVILLPKN-----  404 (508)
T ss_pred             ccc---hhHHHhcCccccccceEEcCC--CCeEEEecCCccEEEecCcchhhhhhccCC-CCcccceeEEEcCCC-----
Confidence            766   477889999999999999988  779999999999999998755443322221 334456666655532     


Q ss_pred             eecccCCCceeEEEeeCCCcEEEEEEecCccccccccccc----cCCCceeEEEeeCCCCCCccEEEEEecCCeEEEEEe
Q 022111          167 VGLGLLDPVQKLASCGCDNTVKVWKMYNGIWKMDCFPALQ----MHSDWVRSVAWAPNLGLPKSTIASASQDGTVVIWTC  242 (302)
Q Consensus       167 ~~~~~~~~~~~l~s~~~D~~v~iwd~~~~~~~~~~~~~~~----~h~~~v~~v~~~p~~~~~~~~l~s~s~D~~i~iwd~  242 (302)
                              ...++.|...++|+|-++...     .++.|.    ...+.|.| +.+|.|    ..+-+.++|+.+..|.+
T Consensus       405 --------peh~iVCNrsntv~imn~qGQ-----vVrsfsSGkREgGdFi~~-~lSpkG----ewiYcigED~vlYCF~~  466 (508)
T KOG0275|consen  405 --------PEHFIVCNRSNTVYIMNMQGQ-----VVRSFSSGKREGGDFINA-ILSPKG----EWIYCIGEDGVLYCFSV  466 (508)
T ss_pred             --------CceEEEEcCCCeEEEEeccce-----EEeeeccCCccCCceEEE-EecCCC----cEEEEEccCcEEEEEEe
Confidence                    357899999999999887642     233332    12345655 678985    78999999999999998


Q ss_pred             ccCCcceeeeeeccCCCcEEEEEEccCCCEEEEecCC-ceEEee
Q 022111          243 AKEGEQWEGRVLKDFKTPVWSVSWSLTGNLLAVADAN-NVTLWK  285 (302)
Q Consensus       243 ~~~~~~~~~~~~~~~~~~v~~~~~spdg~~la~~~~d-~i~~w~  285 (302)
                      .+.+.   ...+.-|+..+-.++-+|..+.||+-+.| -+++|+
T Consensus       467 ~sG~L---E~tl~VhEkdvIGl~HHPHqNllAsYsEDgllKLWk  507 (508)
T KOG0275|consen  467 LSGKL---ERTLPVHEKDVIGLTHHPHQNLLASYSEDGLLKLWK  507 (508)
T ss_pred             ecCce---eeeeecccccccccccCcccchhhhhcccchhhhcC
Confidence            76542   23344455567789999999999999999 589996

>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]

Probab=99.90  E-value=1.6e-21  Score=157.91  Aligned_cols=216  Identities=20%  Similarity=0.393  Sum_probs=163.9

Q ss_pred             ccccccccceeEEEEccC-CCEEEEeeCCCcEEEEeecCCCc----------eEE---EEecCcccCeEEEEeeCCCCCC
Q 022111            5 KIETGHEDTVHDVAMDFY-GKRLATASSDSSIKIIGLSNSAS----------QHL---ATLKGHRGPVWQVAWAHPKFGS   70 (302)
Q Consensus         5 ~~~~~h~~~v~~~~~s~~-~~~l~s~~~d~~v~lw~~~~~~~----------~~~---~~~~~h~~~v~~v~~~~~~~~~   70 (302)
                      .+...|.+.|+++...+. |++++||+.||.|.+||+.+...          .++   ..-.+|.-.|..+.|.|- +--
T Consensus        37 d~~r~HgGsvNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky~iss~~WyP~-DtG  115 (397)
T KOG4283|consen   37 DFVRPHGGSVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHKYAISSAIWYPI-DTG  115 (397)
T ss_pred             ceeccCCCccceeeeccccceEEeecCCCccEEEEEeccccchhhccceeheeeeccccCCccceeeeeeeEEeee-cCc
Confidence            345579999999988764 79999999999999999965331          111   112468888999999764 345


Q ss_pred             EEEEEeCCCeEEEEEcCCCCceeEEEEecCCCCCeeEEEecCCCC-CcEEEEEecCCcEEEEEecCCCCeeeeeecccCC
Q 022111           71 ILASCSYDGQVIIWKEGNQNDWTQAHTFNDHKSSVNSIAWAPHEL-GLSLACGSSDGNISVFTATADGGWDTTRIDQAHP  149 (302)
Q Consensus        71 ~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~h~~~i~~l~~~pd~~-~~~l~sg~~d~~v~~~~~~~~~~~~~~~~~~~h~  149 (302)
                      ++.|+|-|.++++||.++.+   ....|+ -.+.|.+-+++|-.. .-++|+|..|-+|++.|+..+...  ..+ ++|.
T Consensus       116 mFtssSFDhtlKVWDtnTlQ---~a~~F~-me~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SGs~s--H~L-sGHr  188 (397)
T KOG4283|consen  116 MFTSSSFDHTLKVWDTNTLQ---EAVDFK-MEGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASGSFS--HTL-SGHR  188 (397)
T ss_pred             eeecccccceEEEeecccce---eeEEee-cCceeehhhcChhhhcceEEEEecCCCcEEEEeccCCcce--eee-cccc
Confidence            88899999999999987653   333444 567788888887532 347999999999999999765321  333 5999


Q ss_pred             CCeEEEEeCCCCCCCceeecccCCCceeEEEeeCCCcEEEEEEecCc-----------cccccccccccCCCceeEEEee
Q 022111          150 VGVTSVSWAPAMAPGALVGLGLLDPVQKLASCGCDNTVKVWKMYNGI-----------WKMDCFPALQMHSDWVRSVAWA  218 (302)
Q Consensus       150 ~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~D~~v~iwd~~~~~-----------~~~~~~~~~~~h~~~v~~v~~~  218 (302)
                      ..|.++.|+|..             .-.|++|+.|+.||+||++...           .....+.+-..|.+.|+.++|+
T Consensus       189 ~~vlaV~Wsp~~-------------e~vLatgsaDg~irlWDiRrasgcf~~lD~hn~k~~p~~~~n~ah~gkvngla~t  255 (397)
T KOG4283|consen  189 DGVLAVEWSPSS-------------EWVLATGSADGAIRLWDIRRASGCFRVLDQHNTKRPPILKTNTAHYGKVNGLAWT  255 (397)
T ss_pred             CceEEEEeccCc-------------eeEEEecCCCceEEEEEeecccceeEEeecccCccCccccccccccceeeeeeec
Confidence            999999999964             3679999999999999997531           0111122334688899999999


Q ss_pred             CCCCCCccEEEEEecCCeEEEEEeccC
Q 022111          219 PNLGLPKSTIASASQDGTVVIWTCAKE  245 (302)
Q Consensus       219 p~~~~~~~~l~s~s~D~~i~iwd~~~~  245 (302)
                      .++    .++++.+.|..+|+|+....
T Consensus       256 Sd~----~~l~~~gtd~r~r~wn~~~G  278 (397)
T KOG4283|consen  256 SDA----RYLASCGTDDRIRVWNMESG  278 (397)
T ss_pred             ccc----hhhhhccCccceEEeecccC
Confidence            885    78999999999999998653

>KOG1408 consensus WD40 repeat protein [Function unknown]

Probab=99.90  E-value=1.9e-22  Score=179.94  Aligned_cols=256  Identities=14%  Similarity=0.217  Sum_probs=191.6

Q ss_pred             ccccceeEEEEccCCCEEEEeeCCCcEEEEeecCCCceEEEEecCcccCeEEEEeeCCCC-CCEEEEEeCCCeEEEEEcC
Q 022111            9 GHEDTVHDVAMDFYGKRLATASSDSSIKIIGLSNSASQHLATLKGHRGPVWQVAWAHPKF-GSILASCSYDGQVIIWKEG   87 (302)
Q Consensus         9 ~h~~~v~~~~~s~~~~~l~s~~~d~~v~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~-~~~l~s~s~D~~i~iwd~~   87 (302)
                      +.+..+.+++.+|+|++||+|..-|++|+|++.+  .+....+.+|+..|.++.|+.|.. .++||+++.|+.|+++|..
T Consensus       457 d~r~G~R~~~vSp~gqhLAsGDr~GnlrVy~Lq~--l~~~~~~eAHesEilcLeyS~p~~~~kLLASasrdRlIHV~Dv~  534 (1080)
T KOG1408|consen  457 DSRFGFRALAVSPDGQHLASGDRGGNLRVYDLQE--LEYTCFMEAHESEILCLEYSFPVLTNKLLASASRDRLIHVYDVK  534 (1080)
T ss_pred             CcccceEEEEECCCcceecccCccCceEEEEehh--hhhhhheecccceeEEEeecCchhhhHhhhhccCCceEEEEecc
Confidence            4566799999999999999999999999999965  334456789999999999987643 3579999999999999986


Q ss_pred             CCCceeEEEEecCCCCCeeEEEecCCCCCcEEEEEecCCcEEEEEecCCCCeeeeeecccCCCCeEEEEeCCCCCCCcee
Q 022111           88 NQNDWTQAHTFNDHKSSVNSIAWAPHELGLSLACGSSDGNISVFTATADGGWDTTRIDQAHPVGVTSVSWAPAMAPGALV  167 (302)
Q Consensus        88 ~~~~~~~~~~~~~h~~~i~~l~~~pd~~~~~l~sg~~d~~v~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~  167 (302)
                      .+  ..+++++.+|...|+++.|--.......++++.|+.|.+-...+.+.-.  .+. .|+..+         ....+.
T Consensus       535 rn--y~l~qtld~HSssITsvKFa~~gln~~MiscGADksimFr~~qk~~~g~--~f~-r~t~t~---------~ktTlY  600 (1080)
T KOG1408|consen  535 RN--YDLVQTLDGHSSSITSVKFACNGLNRKMISCGADKSIMFRVNQKASSGR--LFP-RHTQTL---------SKTTLY  600 (1080)
T ss_pred             cc--cchhhhhcccccceeEEEEeecCCceEEEeccCchhhheehhccccCce--ecc-cccccc---------ccceEE
Confidence            43  3577899999999999999765333578899999988763322211111  111 111111         112233


Q ss_pred             ecccCCCceeEEEeeCCCcEEEEEEecCccccccccccccCCCceeEEEeeCCCCCCccEEEEEecCCeEEEEEeccCCc
Q 022111          168 GLGLLDPVQKLASCGCDNTVKVWKMYNGIWKMDCFPALQMHSDWVRSVAWAPNLGLPKSTIASASQDGTVVIWTCAKEGE  247 (302)
Q Consensus       168 ~~~~~~~~~~l~s~~~D~~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~l~s~s~D~~i~iwd~~~~~~  247 (302)
                      .+...+..+++++++.|++|+|||+.+++.. +.+..-.+|++..-.+...|.+    .+||+...|++|.++|..+.. 
T Consensus       601 Dm~Vdp~~k~v~t~cQDrnirif~i~sgKq~-k~FKgs~~~eG~lIKv~lDPSg----iY~atScsdktl~~~Df~sgE-  674 (1080)
T KOG1408|consen  601 DMAVDPTSKLVVTVCQDRNIRIFDIESGKQV-KSFKGSRDHEGDLIKVILDPSG----IYLATSCSDKTLCFVDFVSGE-  674 (1080)
T ss_pred             EeeeCCCcceEEEEecccceEEEecccccee-eeecccccCCCceEEEEECCCc----cEEEEeecCCceEEEEeccch-
Confidence            3344445689999999999999999987533 2223334577777788888985    789999999999999987642 


Q ss_pred             ceeeeeeccCCCcEEEEEEccCCCEEEEecCC-ceEEeeecC
Q 022111          248 QWEGRVLKDFKTPVWSVSWSLTGNLLAVADAN-NVTLWKEAV  288 (302)
Q Consensus       248 ~~~~~~~~~~~~~v~~~~~spdg~~la~~~~d-~i~~w~~~~  288 (302)
                       . .....+|.+-|..+.|++|-+.|+++++| -|.+|+...
T Consensus       675 -c-vA~m~GHsE~VTG~kF~nDCkHlISvsgDgCIFvW~lp~  714 (1080)
T KOG1408|consen  675 -C-VAQMTGHSEAVTGVKFLNDCKHLISVSGDGCIFVWKLPL  714 (1080)
T ss_pred             -h-hhhhcCcchheeeeeecccchhheeecCCceEEEEECch
Confidence             2 22346888889999999999999999999 589999754

>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]

Probab=99.90  E-value=1.6e-22  Score=163.74  Aligned_cols=225  Identities=20%  Similarity=0.318  Sum_probs=165.0

Q ss_pred             cCcccCeEEEEeeCCCCCCEEEEEeCCCeEEEEEcCCCCce-----eEE-------EEecCCCCCeeEEEecCCCCCcEE
Q 022111           52 KGHRGPVWQVAWAHPKFGSILASCSYDGQVIIWKEGNQNDW-----TQA-------HTFNDHKSSVNSIAWAPHELGLSL  119 (302)
Q Consensus        52 ~~h~~~v~~v~~~~~~~~~~l~s~s~D~~i~iwd~~~~~~~-----~~~-------~~~~~h~~~i~~l~~~pd~~~~~l  119 (302)
                      ..|.+.|..+...+ ..|+++++|+.||.|.+||+++....     .+.       .--.+|+-.|.++.|-|-+.| ++
T Consensus        40 r~HgGsvNsL~id~-tegrymlSGgadgsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky~iss~~WyP~DtG-mF  117 (397)
T KOG4283|consen   40 RPHGGSVNSLQIDL-TEGRYMLSGGADGSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHKYAISSAIWYPIDTG-MF  117 (397)
T ss_pred             ccCCCccceeeecc-ccceEEeecCCCccEEEEEeccccchhhccceeheeeeccccCCccceeeeeeeEEeeecCc-ee
Confidence            45889999999854 57999999999999999999654311     000       112458889999999998766 69


Q ss_pred             EEEecCCcEEEEEecCCCCeeeeeecccCCCCeEEEEeCCCCCCCceeecccCCCceeEEEeeCCCcEEEEEEecCcccc
Q 022111          120 ACGSSDGNISVFTATADGGWDTTRIDQAHPVGVTSVSWAPAMAPGALVGLGLLDPVQKLASCGCDNTVKVWKMYNGIWKM  199 (302)
Q Consensus       120 ~sg~~d~~v~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~D~~v~iwd~~~~~~~~  199 (302)
                      .+++-|.++++||..+.....  .+  .-+..|.+-+|+|....           -.++|+|..|-.|++-|+.++    
T Consensus       118 tssSFDhtlKVWDtnTlQ~a~--~F--~me~~VYshamSp~a~s-----------HcLiA~gtr~~~VrLCDi~SG----  178 (397)
T KOG4283|consen  118 TSSSFDHTLKVWDTNTLQEAV--DF--KMEGKVYSHAMSPMAMS-----------HCLIAAGTRDVQVRLCDIASG----  178 (397)
T ss_pred             ecccccceEEEeecccceeeE--Ee--ecCceeehhhcChhhhc-----------ceEEEEecCCCcEEEEeccCC----
Confidence            999999999999987532221  22  22455677777774311           146777888889999999988    


Q ss_pred             ccccccccCCCceeEEEeeCCCCCCccEEEEEecCCeEEEEEeccCCcce----------e--eeeeccCCCcEEEEEEc
Q 022111          200 DCFPALQMHSDWVRSVAWAPNLGLPKSTIASASQDGTVVIWTCAKEGEQW----------E--GRVLKDFKTPVWSVSWS  267 (302)
Q Consensus       200 ~~~~~~~~h~~~v~~v~~~p~~~~~~~~l~s~s~D~~i~iwd~~~~~~~~----------~--~~~~~~~~~~v~~~~~s  267 (302)
                      .+-+++.||.+.|.+|.|+|..   +-.|++||.||.||+||++....-+          .  .+.-..|.+.|.+++|+
T Consensus       179 s~sH~LsGHr~~vlaV~Wsp~~---e~vLatgsaDg~irlWDiRrasgcf~~lD~hn~k~~p~~~~n~ah~gkvngla~t  255 (397)
T KOG4283|consen  179 SFSHTLSGHRDGVLAVEWSPSS---EWVLATGSADGAIRLWDIRRASGCFRVLDQHNTKRPPILKTNTAHYGKVNGLAWT  255 (397)
T ss_pred             cceeeeccccCceEEEEeccCc---eeEEEecCCCceEEEEEeecccceeEEeecccCccCccccccccccceeeeeeec
Confidence            5668899999999999999985   4689999999999999998641100          0  01112456789999999


Q ss_pred             cCCCEEEEecCC-ceEEeeecCCce--EEEeeecCCC
Q 022111          268 LTGNLLAVADAN-NVTLWKEAVDGE--WQQVSVVEPQ  301 (302)
Q Consensus       268 pdg~~la~~~~d-~i~~w~~~~~~~--~~~~~~~~~~  301 (302)
                      .||+++++.+-| .+++|++. +|+  ..++..+.+|
T Consensus       256 Sd~~~l~~~gtd~r~r~wn~~-~G~ntl~~~g~~~~n  291 (397)
T KOG4283|consen  256 SDARYLASCGTDDRIRVWNME-SGRNTLREFGPIIHN  291 (397)
T ss_pred             ccchhhhhccCccceEEeecc-cCccccccccccccc
Confidence            999999888776 89999974 333  5555444443

>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.89  E-value=6.3e-21  Score=155.27  Aligned_cols=221  Identities=25%  Similarity=0.491  Sum_probs=166.8

Q ss_pred             cCcccCeEEEEeeCCCCCCEEEEEeCCCeEEEEEcC-CCCceeEEEEecCCCCCeeEEEecCCCCCcEEEEEecCCcEEE
Q 022111           52 KGHRGPVWQVAWAHPKFGSILASCSYDGQVIIWKEG-NQNDWTQAHTFNDHKSSVNSIAWAPHELGLSLACGSSDGNISV  130 (302)
Q Consensus        52 ~~h~~~v~~v~~~~~~~~~~l~s~s~D~~i~iwd~~-~~~~~~~~~~~~~h~~~i~~l~~~pd~~~~~l~sg~~d~~v~~  130 (302)
                      .+|.+-|.++.|..  -|+++|||+.|++++|||.+ ....|.+....+.|.+.|..+.|-+-+-|+.+|+++.|++++|
T Consensus        10 s~h~DlihdVs~D~--~GRRmAtCSsDq~vkI~d~~~~s~~W~~Ts~Wrah~~Si~rV~WAhPEfGqvvA~cS~Drtv~i   87 (361)
T KOG2445|consen   10 SGHKDLIHDVSFDF--YGRRMATCSSDQTVKIWDSTSDSGTWSCTSSWRAHDGSIWRVVWAHPEFGQVVATCSYDRTVSI   87 (361)
T ss_pred             cCCcceeeeeeecc--cCceeeeccCCCcEEEEeccCCCCceEEeeeEEecCCcEEEEEecCccccceEEEEecCCceee
Confidence            47899999999953  49999999999999999953 3455777788889999999999987678999999999999999


Q ss_pred             EEecCC------CCeeeeeecccCCCCeEEEEeCCCCCCCceeecccCCCceeEEEeeCCCcEEEEEEecC----ccccc
Q 022111          131 FTATAD------GGWDTTRIDQAHPVGVTSVSWAPAMAPGALVGLGLLDPVQKLASCGCDNTVKVWKMYNG----IWKMD  200 (302)
Q Consensus       131 ~~~~~~------~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~D~~v~iwd~~~~----~~~~~  200 (302)
                      |.-...      ..|.......-....|+.+.|.|..            .|-.||+++.||++|||+..+.    +|++.
T Consensus        88 WEE~~~~~~~~~~~Wv~~ttl~DsrssV~DV~FaP~h------------lGLklA~~~aDG~lRIYEA~dp~nLs~W~Lq  155 (361)
T KOG2445|consen   88 WEEQEKSEEAHGRRWVRRTTLVDSRSSVTDVKFAPKH------------LGLKLAAASADGILRIYEAPDPMNLSQWTLQ  155 (361)
T ss_pred             eeecccccccccceeEEEEEeecCCcceeEEEecchh------------cceEEEEeccCcEEEEEecCCccccccchhh
Confidence            964211      1232222111345578999999853            2567999999999999997654    23321


Q ss_pred             c-----ccccccCCCceeEEEeeCCCCCCccEEEEEecC-----CeEEEEEeccCCcceee-eeeccCCCcEEEEEEccC
Q 022111          201 C-----FPALQMHSDWVRSVAWAPNLGLPKSTIASASQD-----GTVVIWTCAKEGEQWEG-RVLKDFKTPVWSVSWSLT  269 (302)
Q Consensus       201 ~-----~~~~~~h~~~v~~v~~~p~~~~~~~~l~s~s~D-----~~i~iwd~~~~~~~~~~-~~~~~~~~~v~~~~~spd  269 (302)
                      -     ......+...-.||+|+|.. +....||.|+.+     +.++||......+.|.. ..+.++..+|..++|.|+
T Consensus       156 ~Ei~~~~~pp~~~~~~~~CvsWn~sr-~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva~L~d~~dpI~di~wAPn  234 (361)
T KOG2445|consen  156 HEIQNVIDPPGKNKQPCFCVSWNPSR-MHEPLIAVGSDEDAPHLNKVKIYEYNENGRKWLKVAELPDHTDPIRDISWAPN  234 (361)
T ss_pred             hhhhhccCCcccccCcceEEeecccc-ccCceEEEEcccCCccccceEEEEecCCcceeeeehhcCCCCCcceeeeeccc
Confidence            0     11223567778999999863 446778888877     47899988776555532 334688999999999996


Q ss_pred             C----CEEEEecCCceEEeeec
Q 022111          270 G----NLLAVADANNVTLWKEA  287 (302)
Q Consensus       270 g----~~la~~~~d~i~~w~~~  287 (302)
                      -    .+||+|+.|+|+||+..
T Consensus       235 ~Gr~y~~lAvA~kDgv~I~~v~  256 (361)
T KOG2445|consen  235 IGRSYHLLAVATKDGVRIFKVK  256 (361)
T ss_pred             cCCceeeEEEeecCcEEEEEEe
Confidence            2    68899999999999975

>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]

Probab=99.89  E-value=3e-22  Score=172.37  Aligned_cols=238  Identities=17%  Similarity=0.249  Sum_probs=188.3

Q ss_pred             ccceeEEEEccCCCEEEEeeCCCcEEEEeecCCCceEEEEecCcccCeEEEEeeCCCCCCEEEEEeCCCeEEEEEcCCCC
Q 022111           11 EDTVHDVAMDFYGKRLATASSDSSIKIIGLSNSASQHLATLKGHRGPVWQVAWAHPKFGSILASCSYDGQVIIWKEGNQN   90 (302)
Q Consensus        11 ~~~v~~~~~s~~~~~l~s~~~d~~v~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~s~D~~i~iwd~~~~~   90 (302)
                      ...+.++.+.+||+.|++||.-.++.|||+...+......+....-.+++++.+++  .+++++|..||.|.|||+.+. 
T Consensus       465 dnyiRSckL~pdgrtLivGGeastlsiWDLAapTprikaeltssapaCyALa~spD--akvcFsccsdGnI~vwDLhnq-  541 (705)
T KOG0639|consen  465 DNYIRSCKLLPDGRTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPD--AKVCFSCCSDGNIAVWDLHNQ-  541 (705)
T ss_pred             ccceeeeEecCCCceEEeccccceeeeeeccCCCcchhhhcCCcchhhhhhhcCCc--cceeeeeccCCcEEEEEcccc-
Confidence            34688899999999999999999999999976654333344443445778888764  789999999999999999875 


Q ss_pred             ceeEEEEecCCCCCeeEEEecCCCCCcEEEEEecCCcEEEEEecCCCCeeeeeecccCCCCeEEEEeCCCCCCCceeecc
Q 022111           91 DWTQAHTFNDHKSSVNSIAWAPHELGLSLACGSSDGNISVFTATADGGWDTTRIDQAHPVGVTSVSWAPAMAPGALVGLG  170 (302)
Q Consensus        91 ~~~~~~~~~~h~~~i~~l~~~pd~~~~~l~sg~~d~~v~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~  170 (302)
                        ..+.+|++|.+-+.|+.+++|  |..|=||+.|++||-||+++........    ...+|.++.++|.          
T Consensus       542 --~~VrqfqGhtDGascIdis~d--GtklWTGGlDntvRcWDlregrqlqqhd----F~SQIfSLg~cP~----------  603 (705)
T KOG0639|consen  542 --TLVRQFQGHTDGASCIDISKD--GTKLWTGGLDNTVRCWDLREGRQLQQHD----FSSQIFSLGYCPT----------  603 (705)
T ss_pred             --eeeecccCCCCCceeEEecCC--CceeecCCCccceeehhhhhhhhhhhhh----hhhhheecccCCC----------
Confidence              478899999999999999998  7899999999999999998654322111    2346777777775          


Q ss_pred             cCCCceeEEEeeCCCcEEEEEEecCccccccccccccCCCceeEEEeeCCCCCCccEEEEEecCCeEEEEEeccCCccee
Q 022111          171 LLDPVQKLASCGCDNTVKVWKMYNGIWKMDCFPALQMHSDWVRSVAWAPNLGLPKSTIASASQDGTVVIWTCAKEGEQWE  250 (302)
Q Consensus       171 ~~~~~~~l~s~~~D~~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~l~s~s~D~~i~iwd~~~~~~~~~  250 (302)
                          +..|+.|-+.+.+.|.......     .+.+..|++-|.++.|.+-|    +.+++.+.|.-+-.|..--...   
T Consensus       604 ----~dWlavGMens~vevlh~skp~-----kyqlhlheScVLSlKFa~cG----kwfvStGkDnlLnawrtPyGas---  667 (705)
T KOG0639|consen  604 ----GDWLAVGMENSNVEVLHTSKPE-----KYQLHLHESCVLSLKFAYCG----KWFVSTGKDNLLNAWRTPYGAS---  667 (705)
T ss_pred             ----ccceeeecccCcEEEEecCCcc-----ceeecccccEEEEEEecccC----ceeeecCchhhhhhccCccccc---
Confidence                4789999999999988776542     23456799999999999875    8899999999999996532211   


Q ss_pred             eeeeccCCCcEEEEEEccCCCEEEEecCC-ceEEeee
Q 022111          251 GRVLKDFKTPVWSVSWSLTGNLLAVADAN-NVTLWKE  286 (302)
Q Consensus       251 ~~~~~~~~~~v~~~~~spdg~~la~~~~d-~i~~w~~  286 (302)
                       .+-......|.++..|.|.++|++|+.| +..+|.+
T Consensus       668 -iFqskE~SsVlsCDIS~ddkyIVTGSGdkkATVYeV  703 (705)
T KOG0639|consen  668 -IFQSKESSSVLSCDISFDDKYIVTGSGDKKATVYEV  703 (705)
T ss_pred             -eeeccccCcceeeeeccCceEEEecCCCcceEEEEE
Confidence             1112345689999999999999999998 7888864

>KOG4328 consensus WD40 protein [Function unknown]

Probab=99.89  E-value=1.8e-21  Score=165.74  Aligned_cols=261  Identities=18%  Similarity=0.297  Sum_probs=185.5

Q ss_pred             cccccccceeEEEEccCC--CEEEEeeCCCcEEEEeec--CCCceEEEEecCcccCeEEEEeeCCCCCCEEEEEeCCCeE
Q 022111            6 IETGHEDTVHDVAMDFYG--KRLATASSDSSIKIIGLS--NSASQHLATLKGHRGPVWQVAWAHPKFGSILASCSYDGQV   81 (302)
Q Consensus         6 ~~~~h~~~v~~~~~s~~~--~~l~s~~~d~~v~lw~~~--~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~s~D~~i   81 (302)
                      +..-|...|++++|+|.-  +.+|+|..-|+|=+||+.  .+....+..+..|+++|.+|.|+|.+ ...+.+.|+||+|
T Consensus       181 v~kv~~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d~d~v~~f~~hs~~Vs~l~F~P~n-~s~i~ssSyDGti  259 (498)
T KOG4328|consen  181 VAKVTDRRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEKDKDGVYLFTPHSGPVSGLKFSPAN-TSQIYSSSYDGTI  259 (498)
T ss_pred             eeEecccceEEEEecccCcceEEEEccCCCcEEEEecCCCCCccCceEEeccCCccccceEecCCC-hhheeeeccCcee
Confidence            344578899999999964  588899999999999994  22234466788999999999998753 5577889999999


Q ss_pred             EEEEcCCCCceeEEEEecCCCCCeeEEEecCCCCCcEEEEEecCCcEEEEEecCCCCeeeeeecccCCCCeEEEEeCCCC
Q 022111           82 IIWKEGNQNDWTQAHTFNDHKSSVNSIAWAPHELGLSLACGSSDGNISVFTATADGGWDTTRIDQAHPVGVTSVSWAPAM  161 (302)
Q Consensus        82 ~iwd~~~~~~~~~~~~~~~h~~~i~~l~~~pd~~~~~l~sg~~d~~v~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~  161 (302)
                      ++=|++... ...+..+..-...+..+.|+.+. + .++.+..=|...+||.+..+. ....+. .|...|++++++|..
T Consensus       260 R~~D~~~~i-~e~v~s~~~d~~~fs~~d~~~e~-~-~vl~~~~~G~f~~iD~R~~~s-~~~~~~-lh~kKI~sv~~NP~~  334 (498)
T KOG4328|consen  260 RLQDFEGNI-SEEVLSLDTDNIWFSSLDFSAES-R-SVLFGDNVGNFNVIDLRTDGS-EYENLR-LHKKKITSVALNPVC  334 (498)
T ss_pred             eeeeecchh-hHHHhhcCccceeeeeccccCCC-c-cEEEeecccceEEEEeecCCc-cchhhh-hhhcccceeecCCCC
Confidence            999997642 22333333344556777887653 3 466666666999999987653 222332 677899999999964


Q ss_pred             CCCceeecccCCCceeEEEeeCCCcEEEEEEecCccccccccccccCCCceeEEEeeCCCCCCccEEEEEecCCeEEEEE
Q 022111          162 APGALVGLGLLDPVQKLASCGCDNTVKVWKMYNGIWKMDCFPALQMHSDWVRSVAWAPNLGLPKSTIASASQDGTVVIWT  241 (302)
Q Consensus       162 ~~~~~~~~~~~~~~~~l~s~~~D~~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~l~s~s~D~~i~iwd  241 (302)
                                   -.+|||||.|++++|||++.-..+...+-....|.-.|++..|||.+    ..|++.++|.+|||||
T Consensus       335 -------------p~~laT~s~D~T~kIWD~R~l~~K~sp~lst~~HrrsV~sAyFSPs~----gtl~TT~~D~~IRv~d  397 (498)
T KOG4328|consen  335 -------------PWFLATASLDQTAKIWDLRQLRGKASPFLSTLPHRRSVNSAYFSPSG----GTLLTTCQDNEIRVFD  397 (498)
T ss_pred             -------------chheeecccCcceeeeehhhhcCCCCcceecccccceeeeeEEcCCC----CceEeeccCCceEEee
Confidence                         26899999999999999986433322122334699999999999996    3499999999999999


Q ss_pred             ec---cCCcceeeeeeccC-C-C--cEEEEEEccCCCEEEEecCC-ceEEeeecCCce
Q 022111          242 CA---KEGEQWEGRVLKDF-K-T--PVWSVSWSLTGNLLAVADAN-NVTLWKEAVDGE  291 (302)
Q Consensus       242 ~~---~~~~~~~~~~~~~~-~-~--~v~~~~~spdg~~la~~~~d-~i~~w~~~~~~~  291 (302)
                      ..   ....+ ...+.... . -  .....+|.|+..+|++|-.- .|-+++.. .|+
T Consensus       398 ss~~sa~~~p-~~~I~Hn~~t~RwlT~fKA~W~P~~~li~vg~~~r~IDv~~~~-~~q  453 (498)
T KOG4328|consen  398 SSCISAKDEP-LGTIPHNNRTGRWLTPFKAAWDPDYNLIVVGRYPRPIDVFDGN-GGQ  453 (498)
T ss_pred             cccccccCCc-cceeeccCcccccccchhheeCCCccEEEEeccCcceeEEcCC-CCE
Confidence            74   11111 11111111 1 1  23357899999999999655 68888854 444

>KOG0270 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.88  E-value=1.8e-21  Score=165.22  Aligned_cols=212  Identities=21%  Similarity=0.319  Sum_probs=160.8

Q ss_pred             ccccccceeEEEEccCC-CEEEEeeCCCcEEEEeecCCCceEEEEecCcccCeEEEEeeCCCCCCEEEEEeCCCeEEEEE
Q 022111            7 ETGHEDTVHDVAMDFYG-KRLATASSDSSIKIIGLSNSASQHLATLKGHRGPVWQVAWAHPKFGSILASCSYDGQVIIWK   85 (302)
Q Consensus         7 ~~~h~~~v~~~~~s~~~-~~l~s~~~d~~v~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~s~D~~i~iwd   85 (302)
                      .++|+++|.+++|..+- ..|||||.|.+|++||+..+  ++..++..|.+.|.++.|.+ ..+.+|++|+.|+++++.|
T Consensus       239 ~~gHTdavl~Ls~n~~~~nVLaSgsaD~TV~lWD~~~g--~p~~s~~~~~k~Vq~l~wh~-~~p~~LLsGs~D~~V~l~D  315 (463)
T KOG0270|consen  239 ASGHTDAVLALSWNRNFRNVLASGSADKTVKLWDVDTG--KPKSSITHHGKKVQTLEWHP-YEPSVLLSGSYDGTVALKD  315 (463)
T ss_pred             cccchHHHHHHHhccccceeEEecCCCceEEEEEcCCC--CcceehhhcCCceeEEEecC-CCceEEEeccccceEEeee
Confidence            45899999999887654 68999999999999999764  45667878999999999965 4688999999999999999


Q ss_pred             cCCCCceeEEEEecCCCCCeeEEEecCCCCCcEEEEEecCCcEEEEEecCCCCeeeeeecccCCCCeEEEEeCCCCCCCc
Q 022111           86 EGNQNDWTQAHTFNDHKSSVNSIAWAPHELGLSLACGSSDGNISVFTATADGGWDTTRIDQAHPVGVTSVSWAPAMAPGA  165 (302)
Q Consensus        86 ~~~~~~~~~~~~~~~h~~~i~~l~~~pd~~~~~l~sg~~d~~v~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~  165 (302)
                      .+..........   -.+.|-.++|.|... ..+.++..||+++-+|.+..+. ....+ ++|..+|+++++++..    
T Consensus       316 ~R~~~~s~~~wk---~~g~VEkv~w~~~se-~~f~~~tddG~v~~~D~R~~~~-~vwt~-~AHd~~ISgl~~n~~~----  385 (463)
T KOG0270|consen  316 CRDPSNSGKEWK---FDGEVEKVAWDPHSE-NSFFVSTDDGTVYYFDIRNPGK-PVWTL-KAHDDEISGLSVNIQT----  385 (463)
T ss_pred             ccCccccCceEE---eccceEEEEecCCCc-eeEEEecCCceEEeeecCCCCC-ceeEE-EeccCCcceEEecCCC----
Confidence            975322112222   356789999998753 4688889999999999997652 33444 4899999999998754    


Q ss_pred             eeecccCCCceeEEEeeCCCcEEEEEEecCccccccccccccCCCceeEEEeeCCCCCCccEEEEEecCCeEEEEEeccC
Q 022111          166 LVGLGLLDPVQKLASCGCDNTVKVWKMYNGIWKMDCFPALQMHSDWVRSVAWAPNLGLPKSTIASASQDGTVVIWTCAKE  245 (302)
Q Consensus       166 ~~~~~~~~~~~~l~s~~~D~~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~l~s~s~D~~i~iwd~~~~  245 (302)
                               ..+++|++.|++|++|++....-+....+.+.  -+...|.++.|+.   .-++|.|+..+.++|||+...
T Consensus       386 ---------p~~l~t~s~d~~Vklw~~~~~~~~~v~~~~~~--~~rl~c~~~~~~~---a~~la~GG~k~~~~vwd~~~~  451 (463)
T KOG0270|consen  386 ---------PGLLSTASTDKVVKLWKFDVDSPKSVKEHSFK--LGRLHCFALDPDV---AFTLAFGGEKAVLRVWDIFTN  451 (463)
T ss_pred             ---------CcceeeccccceEEEEeecCCCCccccccccc--ccceeecccCCCc---ceEEEecCccceEEEeecccC
Confidence                     26899999999999999865321111111121  1225677788875   468899999999999998653

>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]

Probab=99.88  E-value=2.1e-20  Score=166.48  Aligned_cols=272  Identities=25%  Similarity=0.421  Sum_probs=193.8

Q ss_pred             cccccccceeEEEEccCCCEEEEeeCCCcEEEEeecCCCce-----EEEEecCcccCeEEEEeeCCCCCCEEEEEeCCCe
Q 022111            6 IETGHEDTVHDVAMDFYGKRLATASSDSSIKIIGLSNSASQ-----HLATLKGHRGPVWQVAWAHPKFGSILASCSYDGQ   80 (302)
Q Consensus         6 ~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~lw~~~~~~~~-----~~~~~~~h~~~v~~v~~~~~~~~~~l~s~s~D~~   80 (302)
                      ++.||++-|+++-|+|.+..|+|+++|+++.+|.....++-     ++..+.|..+..+..-|+++  ++.+++-+.-|.
T Consensus       262 ll~GHeDWV~sv~W~p~~~~LLSASaDksmiiW~pd~~tGiWv~~vRlGe~gg~a~GF~g~lw~~n--~~~ii~~g~~Gg  339 (764)
T KOG1063|consen  262 LLMGHEDWVYSVWWHPEGLDLLSASADKSMIIWKPDENTGIWVDVVRLGEVGGSAGGFWGGLWSPN--SNVIIAHGRTGG  339 (764)
T ss_pred             hhcCcccceEEEEEccchhhheecccCcceEEEecCCccceEEEEEEeecccccccceeeEEEcCC--CCEEEEecccCc
Confidence            45699999999999999999999999999999987655432     23334444556788889764  678888899999


Q ss_pred             EEEEEcCCCCceeEEEEecCCCCCeeEEEecCCCCCcEEEEEecCCcEEEEEec-CCCCeeeeeecccCCCCeEEEEeCC
Q 022111           81 VIIWKEGNQNDWTQAHTFNDHKSSVNSIAWAPHELGLSLACGSSDGNISVFTAT-ADGGWDTTRIDQAHPVGVTSVSWAP  159 (302)
Q Consensus        81 i~iwd~~~~~~~~~~~~~~~h~~~i~~l~~~pd~~~~~l~sg~~d~~v~~~~~~-~~~~~~~~~~~~~h~~~v~~~~~~~  159 (302)
                      .++|...+...|.+...+.+|.+.|++++|.|.  |.+|++.+.|.+-|+|-.- ....|.-..-.|.|...++|+++-+
T Consensus       340 ~hlWkt~d~~~w~~~~~iSGH~~~V~dv~W~ps--GeflLsvs~DQTTRlFa~wg~q~~wHEiaRPQiHGyDl~c~~~vn  417 (764)
T KOG1063|consen  340 FHLWKTKDKTFWTQEPVISGHVDGVKDVDWDPS--GEFLLSVSLDQTTRLFARWGRQQEWHEIARPQIHGYDLTCLSFVN  417 (764)
T ss_pred             EEEEeccCccceeeccccccccccceeeeecCC--CCEEEEeccccceeeecccccccceeeecccccccccceeeehcc
Confidence            999985555567777788999999999999997  7799999999999997432 1112322222345666666666544


Q ss_pred             CCC--------------------------------C-------Cc---eeec----------------------------
Q 022111          160 AMA--------------------------------P-------GA---LVGL----------------------------  169 (302)
Q Consensus       160 ~~~--------------------------------~-------~~---~~~~----------------------------  169 (302)
                      ...                                .       ++   .+++                            
T Consensus       418 ~~~~FVSgAdEKVlRvF~aPk~fv~~l~~i~g~~~~~~~~~p~gA~VpaLGLSnKa~~~~e~~~G~~~~~~~et~~~~~p  497 (764)
T KOG1063|consen  418 EDLQFVSGADEKVLRVFEAPKSFVKSLMAICGKCFKGSDELPDGANVPALGLSNKAFFPGETNTGGEAAVCAETPLAAAP  497 (764)
T ss_pred             CCceeeecccceeeeeecCcHHHHHHHHHHhCccccCchhcccccccccccccCCCCcccccccccccceeeecccccCc
Confidence            100                                0       00   0000                            


Q ss_pred             ----------------------------------ccCCCceeEEEeeCCC-----cEEEEEEecCccccccccccccCCC
Q 022111          170 ----------------------------------GLLDPVQKLASCGCDN-----TVKVWKMYNGIWKMDCFPALQMHSD  210 (302)
Q Consensus       170 ----------------------------------~~~~~~~~l~s~~~D~-----~v~iwd~~~~~~~~~~~~~~~~h~~  210 (302)
                                                        ...++++++||+....     -|+||+..+  |.  ..+.+.+|.-
T Consensus       498 ~~L~ePP~EdqLq~~tLwPEv~KLYGHGyEv~~l~~s~~gnliASaCKS~~~ehAvI~lw~t~~--W~--~~~~L~~HsL  573 (764)
T KOG1063|consen  498 CELTEPPTEDQLQQNTLWPEVHKLYGHGYEVYALAISPTGNLIASACKSSLKEHAVIRLWNTAN--WL--QVQELEGHSL  573 (764)
T ss_pred             hhccCCChHHHHHHhccchhhHHhccCceeEEEEEecCCCCEEeehhhhCCccceEEEEEeccc--hh--hhheecccce
Confidence                                              0002355677765433     367777544  22  2346789999


Q ss_pred             ceeEEEeeCCCCCCccEEEEEecCCeEEEEEeccCCcc-eeeeeeccCCCcEEEEEEccCCCEEEEecCC-ceEEeeecC
Q 022111          211 WVRSVAWAPNLGLPKSTIASASQDGTVVIWTCAKEGEQ-WEGRVLKDFKTPVWSVSWSLTGNLLAVADAN-NVTLWKEAV  288 (302)
Q Consensus       211 ~v~~v~~~p~~~~~~~~l~s~s~D~~i~iwd~~~~~~~-~~~~~~~~~~~~v~~~~~spdg~~la~~~~d-~i~~w~~~~  288 (302)
                      .|+.++||||+    ++|++.|.|+++.+|........ ......+.|.-=||+++|+|++.++|++++| +|++|...+
T Consensus       574 TVT~l~FSpdg----~~LLsvsRDRt~sl~~~~~~~~~e~~fa~~k~HtRIIWdcsW~pde~~FaTaSRDK~VkVW~~~~  649 (764)
T KOG1063|consen  574 TVTRLAFSPDG----RYLLSVSRDRTVSLYEVQEDIKDEFRFACLKAHTRIIWDCSWSPDEKYFATASRDKKVKVWEEPD  649 (764)
T ss_pred             EEEEEEECCCC----cEEEEeecCceEEeeeeecccchhhhhccccccceEEEEcccCcccceeEEecCCceEEEEeccC
Confidence            99999999995    88999999999999998543211 1111135565569999999999999999999 799999876


Q ss_pred             C
Q 022111          289 D  289 (302)
Q Consensus       289 ~  289 (302)
                      +
T Consensus       650 ~  650 (764)
T KOG1063|consen  650 L  650 (764)
T ss_pred             c
Confidence            5

>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]

Probab=99.87  E-value=2.4e-20  Score=150.93  Aligned_cols=253  Identities=17%  Similarity=0.241  Sum_probs=182.4

Q ss_pred             cccccceeEEEEccCC-----CEEEEeeCCCcEEEEeecCCC--ceEEEEe-----cCcccCeEEEEeeCCCCCCEEEEE
Q 022111            8 TGHEDTVHDVAMDFYG-----KRLATASSDSSIKIIGLSNSA--SQHLATL-----KGHRGPVWQVAWAHPKFGSILASC   75 (302)
Q Consensus         8 ~~h~~~v~~~~~s~~~-----~~l~s~~~d~~v~lw~~~~~~--~~~~~~~-----~~h~~~v~~v~~~~~~~~~~l~s~   75 (302)
                      ..|.-+++.+.|.|+.     +.|||++  ..+|||.+..+.  ..+...+     ..+.+++++..|+. -+.++|.++
T Consensus        93 fd~~YP~tK~~wiPd~~g~~pdlLATs~--D~LRlWri~~ee~~~~~~~~L~~~kns~~~aPlTSFDWne-~dp~~igtS  169 (364)
T KOG0290|consen   93 FDHPYPVTKLMWIPDSKGVYPDLLATSS--DFLRLWRIGDEESRVELQSVLNNNKNSEFCAPLTSFDWNE-VDPNLIGTS  169 (364)
T ss_pred             CCCCCCccceEecCCccccCcchhhccc--CeEEEEeccCcCCceehhhhhccCcccccCCccccccccc-CCcceeEee
Confidence            3688899999999985     4666654  469999986322  1111111     24667899999964 468899999


Q ss_pred             eCCCeEEEEEcCCCCceeEEEEecCCCCCeeEEEecCCCCCcEEEEEecCCcEEEEEecCCCCeeeeeecccC-CCCeEE
Q 022111           76 SYDGQVIIWKEGNQNDWTQAHTFNDHKSSVNSIAWAPHELGLSLACGSSDGNISVFTATADGGWDTTRIDQAH-PVGVTS  154 (302)
Q Consensus        76 s~D~~i~iwd~~~~~~~~~~~~~~~h~~~i~~l~~~pd~~~~~l~sg~~d~~v~~~~~~~~~~~~~~~~~~~h-~~~v~~  154 (302)
                      |-|-++.|||++.+.......++-.|..+|..++|.... -..+|+.+.||.+|+||++.-....+. .+... ..+...
T Consensus       170 SiDTTCTiWdie~~~~~~vkTQLIAHDKEV~DIaf~~~s-~~~FASvgaDGSvRmFDLR~leHSTII-YE~p~~~~pLlR  247 (364)
T KOG0290|consen  170 SIDTTCTIWDIETGVSGTVKTQLIAHDKEVYDIAFLKGS-RDVFASVGADGSVRMFDLRSLEHSTII-YEDPSPSTPLLR  247 (364)
T ss_pred             cccCeEEEEEEeeccccceeeEEEecCcceeEEEeccCc-cceEEEecCCCcEEEEEecccccceEE-ecCCCCCCccee
Confidence            999999999998763323334566799999999999753 358999999999999999853221111 11111 346778


Q ss_pred             EEeCCCCCCCceeecccCCCceeEEEeeCCC-cEEEEEEecCccccccccccccCCCceeEEEeeCCCCCCccEEEEEec
Q 022111          155 VSWAPAMAPGALVGLGLLDPVQKLASCGCDN-TVKVWKMYNGIWKMDCFPALQMHSDWVRSVAWAPNLGLPKSTIASASQ  233 (302)
Q Consensus       155 ~~~~~~~~~~~~~~~~~~~~~~~l~s~~~D~-~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~l~s~s~  233 (302)
                      ++|++..             -.++|+-..|. .|.|.|++-+.   ..+..+.+|++.|+.|+|.|..   ...|+|+++
T Consensus       248 LswnkqD-------------pnymATf~~dS~~V~iLDiR~P~---tpva~L~~H~a~VNgIaWaPhS---~~hictaGD  308 (364)
T KOG0290|consen  248 LSWNKQD-------------PNYMATFAMDSNKVVILDIRVPC---TPVARLRNHQASVNGIAWAPHS---SSHICTAGD  308 (364)
T ss_pred             eccCcCC-------------chHHhhhhcCCceEEEEEecCCC---cceehhhcCcccccceEecCCC---CceeeecCC
Confidence            8888753             25677766655 59999998764   3456789999999999999985   589999999


Q ss_pred             CCeEEEEEeccCCcc--eeeeeeccCCCcEEEEEEcc-CCCEEEEecCCceEEe
Q 022111          234 DGTVVIWTCAKEGEQ--WEGRVLKDFKTPVWSVSWSL-TGNLLAVADANNVTLW  284 (302)
Q Consensus       234 D~~i~iwd~~~~~~~--~~~~~~~~~~~~v~~~~~sp-dg~~la~~~~d~i~~w  284 (302)
                      |.-.-|||+.+....  ....+.-.-+.+|..+.|+| .++.|+++..+++.+-
T Consensus       309 D~qaliWDl~q~~~~~~~dPilay~a~~EVNqi~Ws~~~~Dwiai~~~kkleiL  362 (364)
T KOG0290|consen  309 DCQALIWDLQQMPRENGEDPILAYTAGGEVNQIQWSSSQPDWIAICFGKKLEIL  362 (364)
T ss_pred             cceEEEEecccccccCCCCchhhhhccceeeeeeecccCCCEEEEEecCeeeEE
Confidence            999999999865321  11112222356799999996 5689999988876654

>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]

Probab=99.87  E-value=1.2e-21  Score=164.95  Aligned_cols=207  Identities=21%  Similarity=0.318  Sum_probs=152.9

Q ss_pred             ccccccccceeEEEEccCCCEEEEeeCCCcEEEEeecCCCceEEEEecCcccCeEEEEeeCCCCCCEEEEEeCCCeEEEE
Q 022111            5 KIETGHEDTVHDVAMDFYGKRLATASSDSSIKIIGLSNSASQHLATLKGHRGPVWQVAWAHPKFGSILASCSYDGQVIIW   84 (302)
Q Consensus         5 ~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~s~D~~i~iw   84 (302)
                      .++.|--+.|+++.|.++++++++++.|+++++|++..  .....+|.||++.|+++.|.-.  ...+++|+.|.++++|
T Consensus       213 ~tLaGs~g~it~~d~d~~~~~~iAas~d~~~r~Wnvd~--~r~~~TLsGHtdkVt~ak~~~~--~~~vVsgs~DRtiK~W  288 (459)
T KOG0288|consen  213 STLAGSLGNITSIDFDSDNKHVIAASNDKNLRLWNVDS--LRLRHTLSGHTDKVTAAKFKLS--HSRVVSGSADRTIKLW  288 (459)
T ss_pred             hhhhccCCCcceeeecCCCceEEeecCCCceeeeeccc--hhhhhhhcccccceeeehhhcc--ccceeeccccchhhhh
Confidence            44567778899999999999999999999999999975  3456789999999999998632  2348999999999999


Q ss_pred             EcCCCCc------------e------------------------eEEEEecCCCCCeeEEEecCCCCCcEEEEEecCCcE
Q 022111           85 KEGNQND------------W------------------------TQAHTFNDHKSSVNSIAWAPHELGLSLACGSSDGNI  128 (302)
Q Consensus        85 d~~~~~~------------~------------------------~~~~~~~~h~~~i~~l~~~pd~~~~~l~sg~~d~~v  128 (302)
                      |+....-            .                        .+..... -.+.|+++..+++  +..|.+++.|.++
T Consensus       289 Dl~k~~C~kt~l~~S~cnDI~~~~~~~~SgH~DkkvRfwD~Rs~~~~~sv~-~gg~vtSl~ls~~--g~~lLsssRDdtl  365 (459)
T KOG0288|consen  289 DLQKAYCSKTVLPGSQCNDIVCSISDVISGHFDKKVRFWDIRSADKTRSVP-LGGRVTSLDLSMD--GLELLSSSRDDTL  365 (459)
T ss_pred             hhhhhheeccccccccccceEecceeeeecccccceEEEeccCCceeeEee-cCcceeeEeeccC--CeEEeeecCCCce
Confidence            9854210            0                        0111122 2358899999988  6688888999999


Q ss_pred             EEEEecCCCCeeeeeecc-cCCCCeEEEEeCCCCCCCceeecccCCCceeEEEeeCCCcEEEEEEecCcccccccccccc
Q 022111          129 SVFTATADGGWDTTRIDQ-AHPVGVTSVSWAPAMAPGALVGLGLLDPVQKLASCGCDNTVKVWKMYNGIWKMDCFPALQM  207 (302)
Q Consensus       129 ~~~~~~~~~~~~~~~~~~-~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~D~~v~iwd~~~~~~~~~~~~~~~~  207 (302)
                      .+.|++...-..+..... ......+.+.|||+              +.++++||.||.|+||++.+++    +...+..
T Consensus       366 ~viDlRt~eI~~~~sA~g~k~asDwtrvvfSpd--------------~~YvaAGS~dgsv~iW~v~tgK----lE~~l~~  427 (459)
T KOG0288|consen  366 KVIDLRTKEIRQTFSAEGFKCASDWTRVVFSPD--------------GSYVAAGSADGSVYIWSVFTGK----LEKVLSL  427 (459)
T ss_pred             eeeecccccEEEEeeccccccccccceeEECCC--------------CceeeeccCCCcEEEEEccCce----EEEEecc
Confidence            999987543222211110 01123677788886              4899999999999999999874    2222322


Q ss_pred             -CC-CceeEEEeeCCCCCCccEEEEEecCCeEEEE
Q 022111          208 -HS-DWVRSVAWAPNLGLPKSTIASASQDGTVVIW  240 (302)
Q Consensus       208 -h~-~~v~~v~~~p~~~~~~~~l~s~s~D~~i~iw  240 (302)
                       +. ..|++++|+|.|    ..+++++.++.+.+|
T Consensus       428 s~s~~aI~s~~W~~sG----~~Llsadk~~~v~lW  458 (459)
T KOG0288|consen  428 STSNAAITSLSWNPSG----SGLLSADKQKAVTLW  458 (459)
T ss_pred             CCCCcceEEEEEcCCC----chhhcccCCcceEec
Confidence             22 269999999985    679999999999999

>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]

Probab=99.87  E-value=5.4e-21  Score=156.91  Aligned_cols=252  Identities=17%  Similarity=0.248  Sum_probs=176.3

Q ss_pred             ccccceeEEEEccCC----CEEEEeeCCCcEEEEeecCCCceEEEEecCcccCeEEEEeeCCCCCCEEEEEeCCCeEEEE
Q 022111            9 GHEDTVHDVAMDFYG----KRLATASSDSSIKIIGLSNSASQHLATLKGHRGPVWQVAWAHPKFGSILASCSYDGQVIIW   84 (302)
Q Consensus         9 ~h~~~v~~~~~s~~~----~~l~s~~~d~~v~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~s~D~~i~iw   84 (302)
                      .|....+.++|+.+.    -+||.||.-|.|||.|+...  +....+.+|...|..|+|.|. .+++|++||.|.+||+|
T Consensus        87 d~~Esfytcsw~yd~~~~~p~la~~G~~GvIrVid~~~~--~~~~~~~ghG~sINeik~~p~-~~qlvls~SkD~svRlw  163 (385)
T KOG1034|consen   87 DHDESFYTCSWSYDSNTGNPFLAAGGYLGVIRVIDVVSG--QCSKNYRGHGGSINEIKFHPD-RPQLVLSASKDHSVRLW  163 (385)
T ss_pred             CCCcceEEEEEEecCCCCCeeEEeecceeEEEEEecchh--hhccceeccCccchhhhcCCC-CCcEEEEecCCceEEEE
Confidence            467778888887652    48999999999999998653  456678899999999999764 57899999999999999


Q ss_pred             EcCCCCceeEEEE---ecCCCCCeeEEEecCCCCCcEEEEEecCCcEEEEEecCCCCeeeeee-----------------
Q 022111           85 KEGNQNDWTQAHT---FNDHKSSVNSIAWAPHELGLSLACGSSDGNISVFTATADGGWDTTRI-----------------  144 (302)
Q Consensus        85 d~~~~~~~~~~~~---~~~h~~~i~~l~~~pd~~~~~l~sg~~d~~v~~~~~~~~~~~~~~~~-----------------  144 (302)
                      ++++.   .++..   +.+|.+.|.+++|+++  |.++++|+.|.++++|++....-....+.                 
T Consensus       164 nI~~~---~Cv~VfGG~egHrdeVLSvD~~~~--gd~i~ScGmDhslk~W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~~  238 (385)
T KOG1034|consen  164 NIQTD---VCVAVFGGVEGHRDEVLSVDFSLD--GDRIASCGMDHSLKLWRLNVKEFKNKLELSITYSPNKTTRPFPTPK  238 (385)
T ss_pred             eccCC---eEEEEecccccccCcEEEEEEcCC--CCeeeccCCcceEEEEecChhHHhhhhhhhcccCCCCccCcCCccc
Confidence            99876   35554   4569999999999998  66999999999999999862110000000                 


Q ss_pred             --------cccCCCCeEEEEeCCCCCCCceeecccCCCceeEEEeeCCCcEEEEEEecCc----------cccccccccc
Q 022111          145 --------DQAHPVGVTSVSWAPAMAPGALVGLGLLDPVQKLASCGCDNTVKVWKMYNGI----------WKMDCFPALQ  206 (302)
Q Consensus       145 --------~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~D~~v~iwd~~~~~----------~~~~~~~~~~  206 (302)
                              ...|...|.++.|-                +.+++|-|.++.|..|..-.-.          ...+.+.++.
T Consensus       239 ~~fp~fst~diHrnyVDCvrw~----------------gd~ilSkscenaI~~w~pgkl~e~~~~vkp~es~~Ti~~~~~  302 (385)
T KOG1034|consen  239 THFPDFSTTDIHRNYVDCVRWF----------------GDFILSKSCENAIVCWKPGKLEESIHNVKPPESATTILGEFD  302 (385)
T ss_pred             cccccccccccccchHHHHHHH----------------hhheeecccCceEEEEecchhhhhhhccCCCccceeeeeEec
Confidence                    00111122222221                4689999999999999862110          0111222333


Q ss_pred             cCCCceeEEEeeCCCCCCccEEEEEecCCeEEEEEeccCCcceeeeee-ccCCCcEEEEEEccCCCEEEEecCC-ceEEe
Q 022111          207 MHSDWVRSVAWAPNLGLPKSTIASASQDGTVVIWTCAKEGEQWEGRVL-KDFKTPVWSVSWSLTGNLLAVADAN-NVTLW  284 (302)
Q Consensus       207 ~h~~~v~~v~~~p~~~~~~~~l~s~s~D~~i~iwd~~~~~~~~~~~~~-~~~~~~v~~~~~spdg~~la~~~~d-~i~~w  284 (302)
                      --...|.-+.|.-|.  -.+.||.|.+.|.+.+||++.+.......+. ..-...|...+||.||.+|+...+| .|..|
T Consensus       303 ~~~c~iWfirf~~d~--~~~~la~gnq~g~v~vwdL~~~ep~~~ttl~~s~~~~tVRQ~sfS~dgs~lv~vcdd~~Vwrw  380 (385)
T KOG1034|consen  303 YPMCDIWFIRFAFDP--WQKMLALGNQSGKVYVWDLDNNEPPKCTTLTHSKSGSTVRQTSFSRDGSILVLVCDDGTVWRW  380 (385)
T ss_pred             cCccceEEEEEeecH--HHHHHhhccCCCcEEEEECCCCCCccCceEEeccccceeeeeeecccCcEEEEEeCCCcEEEE
Confidence            333446666665442  2378999999999999999876432221221 2234569999999999999888888 78888


Q ss_pred             ee
Q 022111          285 KE  286 (302)
Q Consensus       285 ~~  286 (302)
                      |.
T Consensus       381 dr  382 (385)
T KOG1034|consen  381 DR  382 (385)
T ss_pred             Ee
Confidence            74

>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]

Probab=99.87  E-value=2.2e-20  Score=165.01  Aligned_cols=254  Identities=19%  Similarity=0.285  Sum_probs=168.5

Q ss_pred             ccccccceeEEEEccCCCEEEEeeCCCcEEEEeecCCCceEEEEecCcccCeEEEEeeCCCCCCEEEEEeCCCeEEEEEc
Q 022111            7 ETGHEDTVHDVAMDFYGKRLATASSDSSIKIIGLSNSASQHLATLKGHRGPVWQVAWAHPKFGSILASCSYDGQVIIWKE   86 (302)
Q Consensus         7 ~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~s~D~~i~iwd~   86 (302)
                      ...|..+|.++.|-|-...|++++-|.+++.||+..........+.||.+.|.++||.+. +...+++|+.|+.+.|||+
T Consensus        96 ~~aH~nAifDl~wapge~~lVsasGDsT~r~Wdvk~s~l~G~~~~~GH~~SvkS~cf~~~-n~~vF~tGgRDg~illWD~  174 (720)
T KOG0321|consen   96 PLAHKNAIFDLKWAPGESLLVSASGDSTIRPWDVKTSRLVGGRLNLGHTGSVKSECFMPT-NPAVFCTGGRDGEILLWDC  174 (720)
T ss_pred             cccccceeEeeccCCCceeEEEccCCceeeeeeeccceeecceeecccccccchhhhccC-CCcceeeccCCCcEEEEEE
Confidence            347999999999999556899999999999999976443333347899999999999764 5789999999999999998


Q ss_pred             CCCCc---------------e--eE-------EEEecCCCCCeeE---EEecCCCCCcEEEEEec-CCcEEEEEecCCCC
Q 022111           87 GNQND---------------W--TQ-------AHTFNDHKSSVNS---IAWAPHELGLSLACGSS-DGNISVFTATADGG  138 (302)
Q Consensus        87 ~~~~~---------------~--~~-------~~~~~~h~~~i~~---l~~~pd~~~~~l~sg~~-d~~v~~~~~~~~~~  138 (302)
                      +....               .  ++       ......+...|..   +.+..|+.  .||+++. |+.|++||+++...
T Consensus       175 R~n~~d~~e~~~~~~~~~~n~~ptpskp~~kr~~k~kA~s~ti~ssvTvv~fkDe~--tlaSaga~D~~iKVWDLRk~~~  252 (720)
T KOG0321|consen  175 RCNGVDALEEFDNRIYGRHNTAPTPSKPLKKRIRKWKAASNTIFSSVTVVLFKDES--TLASAGAADSTIKVWDLRKNYT  252 (720)
T ss_pred             eccchhhHHHHhhhhhccccCCCCCCchhhccccccccccCceeeeeEEEEEeccc--eeeeccCCCcceEEEeeccccc
Confidence            64320               0  01       1112234444444   44455643  6887777 99999999986432


Q ss_pred             e---eeeeecc--cC---CCCeEEEEeCCCCCCCceeecccCCCceeEEEeeCCCcEEEEEEecCccccccccccccCC-
Q 022111          139 W---DTTRIDQ--AH---PVGVTSVSWAPAMAPGALVGLGLLDPVQKLASCGCDNTVKVWKMYNGIWKMDCFPALQMHS-  209 (302)
Q Consensus       139 ~---~~~~~~~--~h---~~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~D~~v~iwd~~~~~~~~~~~~~~~~h~-  209 (302)
                      .   .......  .|   ..++.++.....+             ..++|+|. |+.|+.|++..-..  .....+.++. 
T Consensus       253 ~~r~ep~~~~~~~t~skrs~G~~nL~lDssG-------------t~L~AsCt-D~sIy~ynm~s~s~--sP~~~~sg~~~  316 (720)
T KOG0321|consen  253 AYRQEPRGSDKYPTHSKRSVGQVNLILDSSG-------------TYLFASCT-DNSIYFYNMRSLSI--SPVAEFSGKLN  316 (720)
T ss_pred             ccccCCCcccCccCcccceeeeEEEEecCCC-------------CeEEEEec-CCcEEEEeccccCc--CchhhccCccc
Confidence            1   0000000  01   1123333222211             24566666 99999999976422  2233444442 


Q ss_pred             --CceeEEEeeCCCCCCccEEEEEecCCeEEEEEeccCCcceeeeeeccCCCcEEEEEEccC--CCEEEEecCC-ceEEe
Q 022111          210 --DWVRSVAWAPNLGLPKSTIASASQDGTVVIWTCAKEGEQWEGRVLKDFKTPVWSVSWSLT--GNLLAVADAN-NVTLW  284 (302)
Q Consensus       210 --~~v~~v~~~p~~~~~~~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~spd--g~~la~~~~d-~i~~w  284 (302)
                        -.|.+ ..+|++    .++++|+.|....||.+......  ..++.+|...|..++|.|.  ..+ +++++| ++++|
T Consensus       317 ~sf~vks-~lSpd~----~~l~SgSsd~~ayiw~vs~~e~~--~~~l~Ght~eVt~V~w~pS~~t~v-~TcSdD~~~kiW  388 (720)
T KOG0321|consen  317 SSFYVKS-ELSPDD----CSLLSGSSDEQAYIWVVSSPEAP--PALLLGHTREVTTVRWLPSATTPV-ATCSDDFRVKIW  388 (720)
T ss_pred             ceeeeee-ecCCCC----ceEeccCCCcceeeeeecCccCC--hhhhhCcceEEEEEeeccccCCCc-eeeccCcceEEE
Confidence              22333 346774    78999999999999999865332  3455788888999999874  455 455777 89999


Q ss_pred             eec
Q 022111          285 KEA  287 (302)
Q Consensus       285 ~~~  287 (302)
                      +..
T Consensus       389 ~l~  391 (720)
T KOG0321|consen  389 RLS  391 (720)
T ss_pred             ecc
Confidence            984

>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]

Probab=99.87  E-value=1.8e-22  Score=180.17  Aligned_cols=195  Identities=27%  Similarity=0.426  Sum_probs=161.5

Q ss_pred             ccccccceeEEEEccCCCEEEEeeCCCcEEEEeecCCCceEEEEecCcccCeEEEEeeCCCCCCEEEEEeCCCeEEEEEc
Q 022111            7 ETGHEDTVHDVAMDFYGKRLATASSDSSIKIIGLSNSASQHLATLKGHRGPVWQVAWAHPKFGSILASCSYDGQVIIWKE   86 (302)
Q Consensus         7 ~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~s~D~~i~iwd~   86 (302)
                      +.+|+.+|.++.|+++...|++|+.+|+|++||+++  .+.+.+|.+|...+..+.|.|  .+.+.|+|+.|.-+++||.
T Consensus        66 ~~~hespIeSl~f~~~E~LlaagsasgtiK~wDlee--Ak~vrtLtgh~~~~~sv~f~P--~~~~~a~gStdtd~~iwD~  141 (825)
T KOG0267|consen   66 LTGHESPIESLTFDTSERLLAAGSASGTIKVWDLEE--AKIVRTLTGHLLNITSVDFHP--YGEFFASGSTDTDLKIWDI  141 (825)
T ss_pred             eeccCCcceeeecCcchhhhcccccCCceeeeehhh--hhhhhhhhccccCcceeeecc--ceEEeccccccccceehhh
Confidence            579999999999999999999999999999999975  345678999999999999965  3889999999999999999


Q ss_pred             CCCCceeEEEEecCCCCCeeEEEecCCCCCcEEEEEecCCcEEEEEecCCCCeeeeeecccCCCCeEEEEeCCCCCCCce
Q 022111           87 GNQNDWTQAHTFNDHKSSVNSIAWAPHELGLSLACGSSDGNISVFTATADGGWDTTRIDQAHPVGVTSVSWAPAMAPGAL  166 (302)
Q Consensus        87 ~~~~~~~~~~~~~~h~~~i~~l~~~pd~~~~~l~sg~~d~~v~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~  166 (302)
                      +..+   +.+.+.+|...+.+++|+|+  |.+++.|+.|..+++||+..+. + ...+. .|+..+..+.+.|..     
T Consensus       142 Rk~G---c~~~~~s~~~vv~~l~lsP~--Gr~v~~g~ed~tvki~d~~agk-~-~~ef~-~~e~~v~sle~hp~e-----  208 (825)
T KOG0267|consen  142 RKKG---CSHTYKSHTRVVDVLRLSPD--GRWVASGGEDNTVKIWDLTAGK-L-SKEFK-SHEGKVQSLEFHPLE-----  208 (825)
T ss_pred             hccC---ceeeecCCcceeEEEeecCC--CceeeccCCcceeeeecccccc-c-ccccc-cccccccccccCchh-----
Confidence            7543   78889999999999999998  7799999999999999986442 1 22333 688889888888753     


Q ss_pred             eecccCCCceeEEEeeCCCcEEEEEEecCccccccccccccCCCceeEEEeeCCCCCCccEEEEEecCC
Q 022111          167 VGLGLLDPVQKLASCGCDNTVKVWKMYNGIWKMDCFPALQMHSDWVRSVAWAPNLGLPKSTIASASQDG  235 (302)
Q Consensus       167 ~~~~~~~~~~~l~s~~~D~~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~l~s~s~D~  235 (302)
                               -++++||.|+++++||+++-    ..+.........|.|++|+|++    ..+++|.+..
T Consensus       209 ---------~Lla~Gs~d~tv~f~dletf----e~I~s~~~~~~~v~~~~fn~~~----~~~~~G~q~s  260 (825)
T KOG0267|consen  209 ---------VLLAPGSSDRTVRFWDLETF----EVISSGKPETDGVRSLAFNPDG----KIVLSGEQIS  260 (825)
T ss_pred             ---------hhhccCCCCceeeeecccee----EEeeccCCccCCceeeeecCCc----eeeecCchhh
Confidence                     57899999999999999853    2333334456789999999996    5666765554

>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.87  E-value=2.8e-21  Score=160.38  Aligned_cols=208  Identities=18%  Similarity=0.337  Sum_probs=153.7

Q ss_pred             cccccccccceeEEEEccCCCEEEEeeCCCcEEEEeecCCCc------------------------------------eE
Q 022111            4 QKIETGHEDTVHDVAMDFYGKRLATASSDSSIKIIGLSNSAS------------------------------------QH   47 (302)
Q Consensus         4 ~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~lw~~~~~~~------------------------------------~~   47 (302)
                      .+++..|.+.|.+|+++.  ..++++|+|++|++|.+..++.                                    .+
T Consensus       102 ~~~f~AH~G~V~Gi~v~~--~~~~tvgdDKtvK~wk~~~~p~~tilg~s~~~gIdh~~~~~~FaTcGe~i~IWD~~R~~P  179 (433)
T KOG0268|consen  102 IRTFKAHEGLVRGICVTQ--TSFFTVGDDKTVKQWKIDGPPLHTILGKSVYLGIDHHRKNSVFATCGEQIDIWDEQRDNP  179 (433)
T ss_pred             hheeecccCceeeEEecc--cceEEecCCcceeeeeccCCcceeeeccccccccccccccccccccCceeeecccccCCc
Confidence            456789999999999986  6788999999999998432110                                    12


Q ss_pred             EEEecCcccCeEEEEeeCCCCCCEEEEEeCCCeEEEEEcCCCCceeEEEEecCCCCCeeEEEecCCCCCcEEEEEecCCc
Q 022111           48 LATLKGHRGPVWQVAWAHPKFGSILASCSYDGQVIIWKEGNQNDWTQAHTFNDHKSSVNSIAWAPHELGLSLACGSSDGN  127 (302)
Q Consensus        48 ~~~~~~h~~~v~~v~~~~~~~~~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~h~~~i~~l~~~pd~~~~~l~sg~~d~~  127 (302)
                      +.++.--.+.|.++.|+|- .-.+|++|+.|+.|.|||++...+   ++... ..-+-+.++|+|.  +..+++|+.|-.
T Consensus       180 v~smswG~Dti~svkfNpv-ETsILas~~sDrsIvLyD~R~~~P---l~KVi-~~mRTN~IswnPe--afnF~~a~ED~n  252 (433)
T KOG0268|consen  180 VSSMSWGADSISSVKFNPV-ETSILASCASDRSIVLYDLRQASP---LKKVI-LTMRTNTICWNPE--AFNFVAANEDHN  252 (433)
T ss_pred             cceeecCCCceeEEecCCC-cchheeeeccCCceEEEecccCCc---cceee-eeccccceecCcc--ccceeecccccc
Confidence            3334333456677777653 456899999999999999987653   33322 2345588999994  668999999999


Q ss_pred             EEEEEecCCCCeeeeeecccCCCCeEEEEeCCCCCCCceeecccCCCceeEEEeeCCCcEEEEEEecCcccccccccccc
Q 022111          128 ISVFTATADGGWDTTRIDQAHPVGVTSVSWAPAMAPGALVGLGLLDPVQKLASCGCDNTVKVWKMYNGIWKMDCFPALQM  207 (302)
Q Consensus       128 v~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~D~~v~iwd~~~~~~~~~~~~~~~~  207 (302)
                      ++.||++.-.  .+......|...|.++.|+|.+              +-|+|||.|++||||..+.+... +.+++-  
T Consensus       253 lY~~DmR~l~--~p~~v~~dhvsAV~dVdfsptG--------------~EfvsgsyDksIRIf~~~~~~SR-diYhtk--  313 (433)
T KOG0268|consen  253 LYTYDMRNLS--RPLNVHKDHVSAVMDVDFSPTG--------------QEFVSGSYDKSIRIFPVNHGHSR-DIYHTK--  313 (433)
T ss_pred             ceehhhhhhc--ccchhhcccceeEEEeccCCCc--------------chhccccccceEEEeecCCCcch-hhhhHh--
Confidence            9999987432  1122334788899999999974              78999999999999998765311 222111  


Q ss_pred             CCCceeEEEeeCCCCCCccEEEEEecCCeEEEEEec
Q 022111          208 HSDWVRSVAWAPNLGLPKSTIASASQDGTVVIWTCA  243 (302)
Q Consensus       208 h~~~v~~v~~~p~~~~~~~~l~s~s~D~~i~iwd~~  243 (302)
                      --..|.||.||-|.    ++|+|||+|++||+|...
T Consensus       314 RMq~V~~Vk~S~Ds----kyi~SGSdd~nvRlWka~  345 (433)
T KOG0268|consen  314 RMQHVFCVKYSMDS----KYIISGSDDGNVRLWKAK  345 (433)
T ss_pred             hhheeeEEEEeccc----cEEEecCCCcceeeeecc
Confidence            12348999999885    789999999999999865

>KOG1539 consensus WD repeat protein [General function prediction only]

Probab=99.87  E-value=3.4e-20  Score=168.13  Aligned_cols=254  Identities=20%  Similarity=0.271  Sum_probs=186.5

Q ss_pred             ccccccceeEEEEccCCCEEEEeeCCCcEEEEeecCCCc--eEEEEecCcccCeEEEEeeCCCCCCEEEEEeCCCeEEEE
Q 022111            7 ETGHEDTVHDVAMDFYGKRLATASSDSSIKIIGLSNSAS--QHLATLKGHRGPVWQVAWAHPKFGSILASCSYDGQVIIW   84 (302)
Q Consensus         7 ~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~lw~~~~~~~--~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~s~D~~i~iw   84 (302)
                      ...|.+.|+.+.|-+....+++++.|+.+++|=.+.+.+  ..+..-.||+.+-.+|+|... .|..+.+++.|++++.+
T Consensus       284 ~nah~~sv~~~~fl~~epVl~ta~~DnSlk~~vfD~~dg~pR~LR~R~GHs~Pp~~irfy~~-~g~~ilsa~~Drt~r~f  362 (910)
T KOG1539|consen  284 RNAHYGSVTGATFLPGEPVLVTAGADNSLKVWVFDSGDGVPRLLRSRGGHSAPPSCIRFYGS-QGHFILSAKQDRTLRSF  362 (910)
T ss_pred             eccccCCcccceecCCCceEeeccCCCceeEEEeeCCCCcchheeeccCCCCCchheeeecc-CcEEEEecccCcchhhh
Confidence            447889999999999889999999999999997654333  334555789999999999643 48889999999998888


Q ss_pred             EcCCCC------------------c-----------------------ee----------E------------EEEec--
Q 022111           85 KEGNQN------------------D-----------------------WT----------Q------------AHTFN--   99 (302)
Q Consensus        85 d~~~~~------------------~-----------------------~~----------~------------~~~~~--   99 (302)
                      ++....                  .                       |.          .            .+.+.  
T Consensus       363 s~~~e~~~~~l~~~~~~~~~kk~~~~~~~~~k~p~i~~fa~~~~RE~~W~Nv~~~h~~~~~~~tW~~~n~~~G~~~L~~~  442 (910)
T KOG1539|consen  363 SVISESQSQELGQLHNKKRAKKVNVFSTEKLKLPPIVEFAFENAREKEWDNVITAHKGKRSAYTWNFRNKTSGRHVLDPK  442 (910)
T ss_pred             hhhHHHHhHhhcccccccccccccccchhhhcCCcceeeecccchhhhhcceeEEecCcceEEEEeccCcccccEEecCc
Confidence            642100                  0                       00          0            00111  


Q ss_pred             ---CCCCCeeEEEecCCCCCcEEEEEecCCcEEEEEecCCCCeeeeeecccCCCCeEEEEeCCCCCCCceeecccCCCce
Q 022111          100 ---DHKSSVNSIAWAPHELGLSLACGSSDGNISVFTATADGGWDTTRIDQAHPVGVTSVSWAPAMAPGALVGLGLLDPVQ  176 (302)
Q Consensus       100 ---~h~~~i~~l~~~pd~~~~~l~sg~~d~~v~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~  176 (302)
                         .....+++++.+++  |.....|...|.|.+|++..+-......-...|..+|+.++..-              .++
T Consensus       443 ~~~~~~~~~~av~vs~C--GNF~~IG~S~G~Id~fNmQSGi~r~sf~~~~ah~~~V~gla~D~--------------~n~  506 (910)
T KOG1539|consen  443 RFKKDDINATAVCVSFC--GNFVFIGYSKGTIDRFNMQSGIHRKSFGDSPAHKGEVTGLAVDG--------------TNR  506 (910)
T ss_pred             cccccCcceEEEEEecc--CceEEEeccCCeEEEEEcccCeeecccccCccccCceeEEEecC--------------CCc
Confidence               11256778888887  77889999999999999865422111111246888888887542              247


Q ss_pred             eEEEeeCCCcEEEEEEecCcc-------------------------------------ccccccccccCCCceeEEEeeC
Q 022111          177 KLASCGCDNTVKVWKMYNGIW-------------------------------------KMDCFPALQMHSDWVRSVAWAP  219 (302)
Q Consensus       177 ~l~s~~~D~~v~iwd~~~~~~-------------------------------------~~~~~~~~~~h~~~v~~v~~~p  219 (302)
                      .++|++.+|.+++||.++...                                     ..+..+.|.||.+.|++++|||
T Consensus       507 ~~vsa~~~Gilkfw~f~~k~l~~~l~l~~~~~~iv~hr~s~l~a~~~ddf~I~vvD~~t~kvvR~f~gh~nritd~~FS~  586 (910)
T KOG1539|consen  507 LLVSAGADGILKFWDFKKKVLKKSLRLGSSITGIVYHRVSDLLAIALDDFSIRVVDVVTRKVVREFWGHGNRITDMTFSP  586 (910)
T ss_pred             eEEEccCcceEEEEecCCcceeeeeccCCCcceeeeeehhhhhhhhcCceeEEEEEchhhhhhHHhhccccceeeeEeCC
Confidence            799999999999999765320                                     0123466889999999999999


Q ss_pred             CCCCCccEEEEEecCCeEEEEEeccCCcceeeeeeccCCCcEEEEEEccCCCEEEEecCC--ceEEee
Q 022111          220 NLGLPKSTIASASQDGTVVIWTCAKEGEQWEGRVLKDFKTPVWSVSWSLTGNLLAVADAN--NVTLWK  285 (302)
Q Consensus       220 ~~~~~~~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~la~~~~d--~i~~w~  285 (302)
                      |+    +.|++++.|++||+||+-+..-    .-......+..+++|||+|++||++..|  +|.+|-
T Consensus       587 Dg----rWlisasmD~tIr~wDlpt~~l----ID~~~vd~~~~sls~SPngD~LAT~Hvd~~gIylWs  646 (910)
T KOG1539|consen  587 DG----RWLISASMDSTIRTWDLPTGTL----IDGLLVDSPCTSLSFSPNGDFLATVHVDQNGIYLWS  646 (910)
T ss_pred             CC----cEEEEeecCCcEEEEeccCcce----eeeEecCCcceeeEECCCCCEEEEEEecCceEEEEE
Confidence            96    8899999999999999975421    1112345788999999999999999877  699996

>KOG2096 consensus WD40 repeat protein [General function prediction only]

Probab=99.86  E-value=3.4e-20  Score=151.81  Aligned_cols=214  Identities=17%  Similarity=0.308  Sum_probs=146.9

Q ss_pred             EEEecCcccCeEEEEeeCCCCCCEEEEEeCCCeEEEEEcCCCCc--eeEEEEecCCCCCeeEEEecCCCCCcEEEEEecC
Q 022111           48 LATLKGHRGPVWQVAWAHPKFGSILASCSYDGQVIIWKEGNQND--WTQAHTFNDHKSSVNSIAWAPHELGLSLACGSSD  125 (302)
Q Consensus        48 ~~~~~~h~~~v~~v~~~~~~~~~~l~s~s~D~~i~iwd~~~~~~--~~~~~~~~~h~~~i~~l~~~pd~~~~~l~sg~~d  125 (302)
                      +..|++|.+.|++++|+.+  |++|||++.|++|++|++++-..  -.++.. +.-.+-.+.++|.||.. ..++++-..
T Consensus        79 ~~~LKgH~~~vt~~~FsSd--GK~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~-nve~dhpT~V~FapDc~-s~vv~~~~g  154 (420)
T KOG2096|consen   79 VSVLKGHKKEVTDVAFSSD--GKKLATISGDRSIRLWDVRDFENKEHRCIRQ-NVEYDHPTRVVFAPDCK-SVVVSVKRG  154 (420)
T ss_pred             hhhhhccCCceeeeEEcCC--CceeEEEeCCceEEEEecchhhhhhhhHhhc-cccCCCceEEEECCCcc-eEEEEEccC
Confidence            3568999999999999864  99999999999999999864211  011111 11123458899999964 456677778


Q ss_pred             CcEEEEEecC--CCCee-------eeeecccCCCCeEEEEeCCCCCCCceeecccCCCceeEEEeeCCCcEEEEEEecCc
Q 022111          126 GNISVFTATA--DGGWD-------TTRIDQAHPVGVTSVSWAPAMAPGALVGLGLLDPVQKLASCGCDNTVKVWKMYNGI  196 (302)
Q Consensus       126 ~~v~~~~~~~--~~~~~-------~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~D~~v~iwd~~~~~  196 (302)
                      +++++|.+.+  ++...       ...+...|...              ++.++..+++.+|+||+.|..|.||+++.. 
T Consensus       155 ~~l~vyk~~K~~dG~~~~~~v~~D~~~f~~kh~v~--------------~i~iGiA~~~k~imsas~dt~i~lw~lkGq-  219 (420)
T KOG2096|consen  155 NKLCVYKLVKKTDGSGSHHFVHIDNLEFERKHQVD--------------IINIGIAGNAKYIMSASLDTKICLWDLKGQ-  219 (420)
T ss_pred             CEEEEEEeeecccCCCCcccccccccccchhcccc--------------eEEEeecCCceEEEEecCCCcEEEEecCCc-
Confidence            8999997753  22111       11111122222              222334445789999999999999999842 


Q ss_pred             cccccccccccCCCceeEEEeeCCCCCCccEEEEEecCCeEEEEEeccCCc-ce----eeeeeccCCCcEEEEEEccCCC
Q 022111          197 WKMDCFPALQMHSDWVRSVAWAPNLGLPKSTIASASQDGTVVIWTCAKEGE-QW----EGRVLKDFKTPVWSVSWSLTGN  271 (302)
Q Consensus       197 ~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~l~s~s~D~~i~iwd~~~~~~-~~----~~~~~~~~~~~v~~~~~spdg~  271 (302)
                          .+.........-+..+.||+|    ++|++++.---+++|.+--.+. ..    ..-.+++|...|.+++||++.+
T Consensus       220 ----~L~~idtnq~~n~~aavSP~G----RFia~~gFTpDVkVwE~~f~kdG~fqev~rvf~LkGH~saV~~~aFsn~S~  291 (420)
T KOG2096|consen  220 ----LLQSIDTNQSSNYDAAVSPDG----RFIAVSGFTPDVKVWEPIFTKDGTFQEVKRVFSLKGHQSAVLAAAFSNSST  291 (420)
T ss_pred             ----eeeeeccccccccceeeCCCC----cEEEEecCCCCceEEEEEeccCcchhhhhhhheeccchhheeeeeeCCCcc
Confidence                223333223334567889995    8999999999999999743221 11    1113578889999999999999


Q ss_pred             EEEEecCC-ceEEeeecC
Q 022111          272 LLAVADAN-NVTLWKEAV  288 (302)
Q Consensus       272 ~la~~~~d-~i~~w~~~~  288 (302)
                      ++++++.| +++|||..+
T Consensus       292 r~vtvSkDG~wriwdtdV  309 (420)
T KOG2096|consen  292 RAVTVSKDGKWRIWDTDV  309 (420)
T ss_pred             eeEEEecCCcEEEeeccc
Confidence            99999999 799999754

>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]

Probab=99.86  E-value=3.8e-20  Score=149.59  Aligned_cols=238  Identities=20%  Similarity=0.331  Sum_probs=167.8

Q ss_pred             CCEEEEee----CCCcEEEEeecCCCceE-EEEecCcccCeEEEEeeCCCCCCEEEEEeCC-------CeEEEEEcCCCC
Q 022111           23 GKRLATAS----SDSSIKIIGLSNSASQH-LATLKGHRGPVWQVAWAHPKFGSILASCSYD-------GQVIIWKEGNQN   90 (302)
Q Consensus        23 ~~~l~s~~----~d~~v~lw~~~~~~~~~-~~~~~~h~~~v~~v~~~~~~~~~~l~s~s~D-------~~i~iwd~~~~~   90 (302)
                      .-.+++|.    .|++|.+.+++.+.... ...|.-|.+.|+.|+-+| .+..+|+|+-.|       ..+.||.+....
T Consensus        26 ~icFlvgTnslK~dNqVhll~~d~e~s~l~skvf~h~agEvw~las~P-~d~~ilaT~yn~~s~s~vl~~aaiw~ipe~~  104 (370)
T KOG1007|consen   26 HICFLVGTNSLKEDNQVHLLRLDSEGSELLSKVFFHHAGEVWDLASSP-FDQRILATVYNDTSDSGVLTGAAIWQIPEPL  104 (370)
T ss_pred             ceEEEEeccccCCcceeEEEEecCccchhhhhhhhcCCcceehhhcCC-CCCceEEEEEeccCCCcceeeEEEEeccccc
Confidence            33455554    67889998886554332 234667889999999654 567889988653       246789885432


Q ss_pred             c------eeEEEEec-CCCCCeeEEEecCCCCCcEEEEEecCCcEEEEEecCCCCeee---eeecccCCCCeEEEEeCCC
Q 022111           91 D------WTQAHTFN-DHKSSVNSIAWAPHELGLSLACGSSDGNISVFTATADGGWDT---TRIDQAHPVGVTSVSWAPA  160 (302)
Q Consensus        91 ~------~~~~~~~~-~h~~~i~~l~~~pd~~~~~l~sg~~d~~v~~~~~~~~~~~~~---~~~~~~h~~~v~~~~~~~~  160 (302)
                      .      +.++..+. .+-++|.|+.|.|+  +..+++.. |+.|.+|++........   .....++....++-+|+|.
T Consensus       105 ~~S~~~tlE~v~~Ldteavg~i~cvew~Pn--s~klasm~-dn~i~l~~l~ess~~vaev~ss~s~e~~~~ftsg~WspH  181 (370)
T KOG1007|consen  105 GQSNSSTLECVASLDTEAVGKINCVEWEPN--SDKLASMD-DNNIVLWSLDESSKIVAEVLSSESAEMRHSFTSGAWSPH  181 (370)
T ss_pred             CccccchhhHhhcCCHHHhCceeeEEEcCC--CCeeEEec-cCceEEEEcccCcchheeecccccccccceecccccCCC
Confidence            2      22333343 45679999999997  55788776 89999999876543211   1112234556788889985


Q ss_pred             CCCCceeecccCCCceeEEEeeCCCcEEEEEEecCccccccccc-cccCCCceeEEEeeCCCCCCccEEEEEecCCeEEE
Q 022111          161 MAPGALVGLGLLDPVQKLASCGCDNTVKVWKMYNGIWKMDCFPA-LQMHSDWVRSVAWAPNLGLPKSTIASASQDGTVVI  239 (302)
Q Consensus       161 ~~~~~~~~~~~~~~~~~l~s~~~D~~v~iwd~~~~~~~~~~~~~-~~~h~~~v~~v~~~p~~~~~~~~l~s~s~D~~i~i  239 (302)
                      -            ++..+++. .|+++..||+++-.    +... -..|...|+++.|+|+.   ...|+|+++|+.|||
T Consensus       182 H------------dgnqv~tt-~d~tl~~~D~RT~~----~~~sI~dAHgq~vrdlDfNpnk---q~~lvt~gDdgyvri  241 (370)
T KOG1007|consen  182 H------------DGNQVATT-SDSTLQFWDLRTMK----KNNSIEDAHGQRVRDLDFNPNK---QHILVTCGDDGYVRI  241 (370)
T ss_pred             C------------ccceEEEe-CCCcEEEEEccchh----hhcchhhhhcceeeeccCCCCc---eEEEEEcCCCccEEE
Confidence            3            24555555 48899999998642    2222 25788899999999986   368999999999999


Q ss_pred             EEeccCCcceeeeeeccCCCcEEEEEEccC-CCEEEEecCC-ceEEeee
Q 022111          240 WTCAKEGEQWEGRVLKDFKTPVWSVSWSLT-GNLLAVADAN-NVTLWKE  286 (302)
Q Consensus       240 wd~~~~~~~~~~~~~~~~~~~v~~~~~spd-g~~la~~~~d-~i~~w~~  286 (302)
                      ||+|..+.+  ...+.+|...||+++|+|- ..+|.++++| .|.||-+
T Consensus       242 WD~R~tk~p--v~el~~HsHWvW~VRfn~~hdqLiLs~~SDs~V~Lsca  288 (370)
T KOG1007|consen  242 WDTRKTKFP--VQELPGHSHWVWAVRFNPEHDQLILSGGSDSAVNLSCA  288 (370)
T ss_pred             EeccCCCcc--ccccCCCceEEEEEEecCccceEEEecCCCceeEEEec
Confidence            999987544  3445788899999999995 4566788888 7999976

>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]

Probab=99.86  E-value=3.5e-19  Score=145.91  Aligned_cols=265  Identities=21%  Similarity=0.363  Sum_probs=204.5

Q ss_pred             cccceeEEEEccCCCEEEEeeCCCcEEEEeecCCC-ceEEEEecCcccCeEEEEeeCCCCCCEEEEEeCCCeEEEEEcCC
Q 022111           10 HEDTVHDVAMDFYGKRLATASSDSSIKIIGLSNSA-SQHLATLKGHRGPVWQVAWAHPKFGSILASCSYDGQVIIWKEGN   88 (302)
Q Consensus        10 h~~~v~~~~~s~~~~~l~s~~~d~~v~lw~~~~~~-~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~s~D~~i~iwd~~~   88 (302)
                      -..+|++.+|++|+..+|.+-....|.||...... .+...+++.|...|+.|.|++.  .+.|++|+.|+...+|...+
T Consensus         9 ~~~pitchAwn~drt~iAv~~~~~evhiy~~~~~~~w~~~htls~Hd~~vtgvdWap~--snrIvtcs~drnayVw~~~~   86 (361)
T KOG1523|consen    9 LLEPITCHAWNSDRTQIAVSPNNHEVHIYSMLGADLWEPAHTLSEHDKIVTGVDWAPK--SNRIVTCSHDRNAYVWTQPS   86 (361)
T ss_pred             ccCceeeeeecCCCceEEeccCCceEEEEEecCCCCceeceehhhhCcceeEEeecCC--CCceeEccCCCCccccccCC
Confidence            34689999999999999999999999999986655 6778899999999999999864  67899999999999999866


Q ss_pred             CCceeEEEEecCCCCCeeEEEecCCCCCcEEEEEecCCcEEEEEecCCCCeeee-eecccCCCCeEEEEeCCCCCCCcee
Q 022111           89 QNDWTQAHTFNDHKSSVNSIAWAPHELGLSLACGSSDGNISVFTATADGGWDTT-RIDQAHPVGVTSVSWAPAMAPGALV  167 (302)
Q Consensus        89 ~~~~~~~~~~~~h~~~i~~l~~~pd~~~~~l~sg~~d~~v~~~~~~~~~~~~~~-~~~~~h~~~v~~~~~~~~~~~~~~~  167 (302)
                      +..|.+.-.+..++...+++.|+|.+  ..+|+|+..+.|.+|-.+..+.|-.. .+...+...|+++.|.|.       
T Consensus        87 ~~~WkptlvLlRiNrAAt~V~WsP~e--nkFAVgSgar~isVcy~E~ENdWWVsKhikkPirStv~sldWhpn-------  157 (361)
T KOG1523|consen   87 GGTWKPTLVLLRINRAATCVKWSPKE--NKFAVGSGARLISVCYYEQENDWWVSKHIKKPIRSTVTSLDWHPN-------  157 (361)
T ss_pred             CCeeccceeEEEeccceeeEeecCcC--ceEEeccCccEEEEEEEecccceehhhhhCCccccceeeeeccCC-------
Confidence            77788888888899999999999984  48999999999999988776666432 233356778999999985       


Q ss_pred             ecccCCCceeEEEeeCCCcEEEEEEec-----C----cc----cc-ccccccccCCCceeEEEeeCCCCCCccEEEEEec
Q 022111          168 GLGLLDPVQKLASCGCDNTVKVWKMYN-----G----IW----KM-DCFPALQMHSDWVRSVAWAPNLGLPKSTIASASQ  233 (302)
Q Consensus       168 ~~~~~~~~~~l~s~~~D~~v~iwd~~~-----~----~~----~~-~~~~~~~~h~~~v~~v~~~p~~~~~~~~l~s~s~  233 (302)
                             +-+|+.|+.|+..||+...=     .    .|    .+ ....++....++|..+.|+|+|    +.|+=.+.
T Consensus       158 -------nVLlaaGs~D~k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~~~~ggwvh~v~fs~sG----~~lawv~H  226 (361)
T KOG1523|consen  158 -------NVLLAAGSTDGKCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEASSSGGWVHGVLFSPSG----NRLAWVGH  226 (361)
T ss_pred             -------cceecccccCcceeEEEEeeeccccCCCCCCCccCCcHHHHHHhhccCCCceeeeEeCCCC----CEeeEecC
Confidence                   36899999999999998521     0    01    11 1122334567899999999996    88999999


Q ss_pred             CCeEEEEEeccCCcceeeeeeccCCCcEEEEEEccCCCEEEEecCC-ceEEeeecCCceEEEeeecC
Q 022111          234 DGTVVIWTCAKEGEQWEGRVLKDFKTPVWSVSWSLTGNLLAVADAN-NVTLWKEAVDGEWQQVSVVE  299 (302)
Q Consensus       234 D~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~la~~~~d-~i~~w~~~~~~~~~~~~~~~  299 (302)
                      |.++.+=|...... . ...+....-|..++.|--+...++ |+.+ .=.++...++|.|....+++
T Consensus       227 ds~v~~~da~~p~~-~-v~~~~~~~lP~ls~~~ise~~vv~-ag~~c~P~lf~~~~~~~l~~~~~ld  290 (361)
T KOG1523|consen  227 DSTVSFVDAAGPSE-R-VQSVATAQLPLLSVSWISENSVVA-AGYDCGPVLFVTDEEGGLSFARRLD  290 (361)
T ss_pred             CCceEEeecCCCch-h-ccchhhccCCceeeEeecCCceee-cCCCCCceEEEeccccceeeehhcC
Confidence            99999988654321 1 122222236788999866555554 4455 76777777777888877665

>KOG1408 consensus WD40 repeat protein [Function unknown]

Probab=99.86  E-value=1.1e-19  Score=162.42  Aligned_cols=252  Identities=19%  Similarity=0.252  Sum_probs=178.4

Q ss_pred             EEEEccCCCEEEEeeCCCcEEEEeecCCC--ceEEEEecCcccCeEEEEeeC-----CC----CCCEEEEEeCCCeEEEE
Q 022111           16 DVAMDFYGKRLATASSDSSIKIIGLSNSA--SQHLATLKGHRGPVWQVAWAH-----PK----FGSILASCSYDGQVIIW   84 (302)
Q Consensus        16 ~~~~s~~~~~l~s~~~d~~v~lw~~~~~~--~~~~~~~~~h~~~v~~v~~~~-----~~----~~~~l~s~s~D~~i~iw   84 (302)
                      .+.|++....|...-.|..+++||+....  ++ ...+--|+.-||.+.--|     +.    -...++||+.|++||+|
T Consensus       329 A~~Fdet~~klscVYndhSlYvWDvrD~~kvgk-~~s~lyHS~ciW~Ve~~p~nv~~~~~aclp~~cF~TCSsD~TIRlW  407 (1080)
T KOG1408|consen  329 ACQFDETTDKLSCVYNDHSLYVWDVRDVNKVGK-CSSMLYHSACIWDVENLPCNVHSPTAACLPRGCFTTCSSDGTIRLW  407 (1080)
T ss_pred             EEEecCCCceEEEEEcCceEEEEeccccccccc-eeeeeeccceeeeeccccccccCcccccCCccceeEecCCCcEEEe
Confidence            46789888999999999999999985422  33 334456999999886543     00    01358899999999999


Q ss_pred             EcCCCCceeE----------------------------------EEEecCCCCCeeEEEecCCCCCcEEEEEecCCcEEE
Q 022111           85 KEGNQNDWTQ----------------------------------AHTFNDHKSSVNSIAWAPHELGLSLACGSSDGNISV  130 (302)
Q Consensus        85 d~~~~~~~~~----------------------------------~~~~~~h~~~i~~l~~~pd~~~~~l~sg~~d~~v~~  130 (302)
                      ++.....-..                                  ....-+..--+++++.+|+  |+.||+|...|++++
T Consensus       408 ~l~~ctnn~vyrRNils~~l~ki~y~d~~~q~~~d~~~~~fdka~~s~~d~r~G~R~~~vSp~--gqhLAsGDr~GnlrV  485 (1080)
T KOG1408|consen  408 DLAFCTNNQVYRRNILSANLSKIPYEDSTQQIMHDASAGIFDKALVSTCDSRFGFRALAVSPD--GQHLASGDRGGNLRV  485 (1080)
T ss_pred             ecccccccceeecccchhhhhcCccccCchhhhhhccCCcccccchhhcCcccceEEEEECCC--cceecccCccCceEE
Confidence            9854110000                                  0000112346899999998  889999999999999


Q ss_pred             EEecCCCCeeeeeecccCCCCeEEEEeCCCCCCCceeecccCCCceeEEEeeCCCcEEEEEEecCccccccccccccCCC
Q 022111          131 FTATADGGWDTTRIDQAHPVGVTSVSWAPAMAPGALVGLGLLDPVQKLASCGCDNTVKVWKMYNGIWKMDCFPALQMHSD  210 (302)
Q Consensus       131 ~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~D~~v~iwd~~~~~~~~~~~~~~~~h~~  210 (302)
                      |++...   ....+-.+|...|.++.|+-...           ..++||+++.|+.|+|||+..+.   ..++++.+|..
T Consensus       486 y~Lq~l---~~~~~~eAHesEilcLeyS~p~~-----------~~kLLASasrdRlIHV~Dv~rny---~l~qtld~HSs  548 (1080)
T KOG1408|consen  486 YDLQEL---EYTCFMEAHESEILCLEYSFPVL-----------TNKLLASASRDRLIHVYDVKRNY---DLVQTLDGHSS  548 (1080)
T ss_pred             EEehhh---hhhhheecccceeEEEeecCchh-----------hhHhhhhccCCceEEEEeccccc---chhhhhccccc
Confidence            998643   22222248999999999874210           13789999999999999987542   45667777777


Q ss_pred             ceeEEEeeCCCC-C--------------------------------------------CccEEEEEecCCeEEEEEeccC
Q 022111          211 WVRSVAWAPNLG-L--------------------------------------------PKSTIASASQDGTVVIWTCAKE  245 (302)
Q Consensus       211 ~v~~v~~~p~~~-~--------------------------------------------~~~~l~s~s~D~~i~iwd~~~~  245 (302)
                      .|++|.|.-.+. .                                            .-.+++++++|+.|||||+...
T Consensus       549 sITsvKFa~~gln~~MiscGADksimFr~~qk~~~g~~f~r~t~t~~ktTlYDm~Vdp~~k~v~t~cQDrnirif~i~sg  628 (1080)
T KOG1408|consen  549 SITSVKFACNGLNRKMISCGADKSIMFRVNQKASSGRLFPRHTQTLSKTTLYDMAVDPTSKLVVTVCQDRNIRIFDIESG  628 (1080)
T ss_pred             ceeEEEEeecCCceEEEeccCchhhheehhccccCceeccccccccccceEEEeeeCCCcceEEEEecccceEEEecccc
Confidence            777777754431 0                                            1367999999999999999875


Q ss_pred             CcceeeeeeccCCCcEEEEEEccCCCEEEEecCC-ceEEeeec
Q 022111          246 GEQWEGRVLKDFKTPVWSVSWSLTGNLLAVADAN-NVTLWKEA  287 (302)
Q Consensus       246 ~~~~~~~~~~~~~~~v~~~~~spdg~~la~~~~d-~i~~w~~~  287 (302)
                      +......-..++.+..-.+...|.|.|||+..+| ++.++|.-
T Consensus       629 Kq~k~FKgs~~~eG~lIKv~lDPSgiY~atScsdktl~~~Df~  671 (1080)
T KOG1408|consen  629 KQVKSFKGSRDHEGDLIKVILDPSGIYLATSCSDKTLCFVDFV  671 (1080)
T ss_pred             ceeeeecccccCCCceEEEEECCCccEEEEeecCCceEEEEec
Confidence            4321111113455566678899999999999888 79999964

>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]

Probab=99.86  E-value=5.9e-19  Score=152.29  Aligned_cols=244  Identities=18%  Similarity=0.291  Sum_probs=178.9

Q ss_pred             cccccc-cceeEEEEccCCCEEEEeeCCCcEEEEeecCCCceEEEEecCcccCeEEEEeeCCCCCCEEEEEeCCCeEEEE
Q 022111            6 IETGHE-DTVHDVAMDFYGKRLATASSDSSIKIIGLSNSASQHLATLKGHRGPVWQVAWAHPKFGSILASCSYDGQVIIW   84 (302)
Q Consensus         6 ~~~~h~-~~v~~~~~s~~~~~l~s~~~d~~v~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~s~D~~i~iw   84 (302)
                      ++.+++ .-|.+++|.++|+ .++|..+|+|.||+...  .+..++..+|.+.|.+++.-.  +|++| ||+.|+.|..|
T Consensus       240 ~fek~ekk~Vl~v~F~engd-viTgDS~G~i~Iw~~~~--~~~~k~~~aH~ggv~~L~~lr--~Gtll-SGgKDRki~~W  313 (626)
T KOG2106|consen  240 IFEKREKKFVLCVTFLENGD-VITGDSGGNILIWSKGT--NRISKQVHAHDGGVFSLCMLR--DGTLL-SGGKDRKIILW  313 (626)
T ss_pred             ccccccceEEEEEEEcCCCC-EEeecCCceEEEEeCCC--ceEEeEeeecCCceEEEEEec--CccEe-ecCccceEEec
Confidence            445543 5799999999996 66899999999999743  333444459999999999864  37655 69999999999


Q ss_pred             EcCCCC--c---------ee------------------E--------EEEecCCCCCeeEEEecCCCCCcEEEEEecCCc
Q 022111           85 KEGNQN--D---------WT------------------Q--------AHTFNDHKSSVNSIAWAPHELGLSLACGSSDGN  127 (302)
Q Consensus        85 d~~~~~--~---------~~------------------~--------~~~~~~h~~~i~~l~~~pd~~~~~l~sg~~d~~  127 (302)
                      |-.-..  +         ..                  .        .....+|.+....++.+|+.  .++++++.|++
T Consensus       314 d~~y~k~r~~elPe~~G~iRtv~e~~~di~vGTtrN~iL~Gt~~~~f~~~v~gh~delwgla~hps~--~q~~T~gqdk~  391 (626)
T KOG2106|consen  314 DDNYRKLRETELPEQFGPIRTVAEGKGDILVGTTRNFILQGTLENGFTLTVQGHGDELWGLATHPSK--NQLLTCGQDKH  391 (626)
T ss_pred             cccccccccccCchhcCCeeEEecCCCcEEEeeccceEEEeeecCCceEEEEecccceeeEEcCCCh--hheeeccCcce
Confidence            832100  0         00                  0        01234688888899999984  48999999999


Q ss_pred             EEEEEecCCCCeeeeeecccCCCCeEEEEeCCCCCCCceeecccCCCceeEEEeeCCCcEEEEEEecCcccccccccccc
Q 022111          128 ISVFTATADGGWDTTRIDQAHPVGVTSVSWAPAMAPGALVGLGLLDPVQKLASCGCDNTVKVWKMYNGIWKMDCFPALQM  207 (302)
Q Consensus       128 v~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~D~~v~iwd~~~~~~~~~~~~~~~~  207 (302)
                      +++|+ ...-.|.  .   .-..++.++.|.|.               ..+|.|...|...+.|..+.    ..+..-..
T Consensus       392 v~lW~-~~k~~wt--~---~~~d~~~~~~fhps---------------g~va~Gt~~G~w~V~d~e~~----~lv~~~~d  446 (626)
T KOG2106|consen  392 VRLWN-DHKLEWT--K---IIEDPAECADFHPS---------------GVVAVGTATGRWFVLDTETQ----DLVTIHTD  446 (626)
T ss_pred             EEEcc-CCceeEE--E---EecCceeEeeccCc---------------ceEEEeeccceEEEEecccc----eeEEEEec
Confidence            99997 2211221  1   22456778888875               37899999999999998763    22222222


Q ss_pred             CCCceeEEEeeCCCCCCccEEEEEecCCeEEEEEeccCCcceeeeeeccCCCcEEEEEEccCCCEEEEecCC-ceEEeee
Q 022111          208 HSDWVRSVAWAPNLGLPKSTIASASQDGTVVIWTCAKEGEQWEGRVLKDFKTPVWSVSWSLTGNLLAVADAN-NVTLWKE  286 (302)
Q Consensus       208 h~~~v~~v~~~p~~~~~~~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~la~~~~d-~i~~w~~  286 (302)
                       .+++++++|+|+|    .+||.||.|+.|.||-+...+... .+..+.+..+|..+.||+|+++|.+-+.| .|.+|+.
T Consensus       447 -~~~ls~v~ysp~G----~~lAvgs~d~~iyiy~Vs~~g~~y-~r~~k~~gs~ithLDwS~Ds~~~~~~S~d~eiLyW~~  520 (626)
T KOG2106|consen  447 -NEQLSVVRYSPDG----AFLAVGSHDNHIYIYRVSANGRKY-SRVGKCSGSPITHLDWSSDSQFLVSNSGDYEILYWKP  520 (626)
T ss_pred             -CCceEEEEEcCCC----CEEEEecCCCeEEEEEECCCCcEE-EEeeeecCceeEEeeecCCCceEEeccCceEEEEEcc
Confidence             7889999999996    889999999999999998765432 23333445889999999999999999999 8999965


Q ss_pred             cC
Q 022111          287 AV  288 (302)
Q Consensus       287 ~~  288 (302)
                      ..
T Consensus       521 ~~  522 (626)
T KOG2106|consen  521 SE  522 (626)
T ss_pred             cc
Confidence            44

>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.86  E-value=7.1e-20  Score=148.82  Aligned_cols=210  Identities=20%  Similarity=0.342  Sum_probs=151.8

Q ss_pred             CcccCeEEEEeeCCCCCCEEEEEeCCCeEEEEEcCCCCceeEEEEecCCCCCeeEEEecCCCCCcEEEEEecCCcEEEEE
Q 022111           53 GHRGPVWQVAWAHPKFGSILASCSYDGQVIIWKEGNQNDWTQAHTFNDHKSSVNSIAWAPHELGLSLACGSSDGNISVFT  132 (302)
Q Consensus        53 ~h~~~v~~v~~~~~~~~~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~h~~~i~~l~~~pd~~~~~l~sg~~d~~v~~~~  132 (302)
                      ..++.|.+|+|+| +...+++.+|+|++||+|+++..+...+ +....|.++|.+++|+.|  |..+++|+.|+.+++||
T Consensus        25 pP~DsIS~l~FSP-~~~~~~~A~SWD~tVR~wevq~~g~~~~-ka~~~~~~PvL~v~Wsdd--gskVf~g~~Dk~~k~wD  100 (347)
T KOG0647|consen   25 PPEDSISALAFSP-QADNLLAAGSWDGTVRIWEVQNSGQLVP-KAQQSHDGPVLDVCWSDD--GSKVFSGGCDKQAKLWD  100 (347)
T ss_pred             CcccchheeEecc-ccCceEEecccCCceEEEEEecCCcccc-hhhhccCCCeEEEEEccC--CceEEeeccCCceEEEE
Confidence            3567899999987 3456788999999999999976433333 344569999999999987  67899999999999999


Q ss_pred             ecCCCCeeeeeecccCCCCeEEEEeCCCCCCCceeecccCCCceeEEEeeCCCcEEEEEEecCccc-----------ccc
Q 022111          133 ATADGGWDTTRIDQAHPVGVTSVSWAPAMAPGALVGLGLLDPVQKLASCGCDNTVKVWKMYNGIWK-----------MDC  201 (302)
Q Consensus       133 ~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~D~~v~iwd~~~~~~~-----------~~~  201 (302)
                      +.++.   ...+ ..|..+|.++.|.+.+            +...|+|||-|++||.||++.....           +++
T Consensus       101 L~S~Q---~~~v-~~Hd~pvkt~~wv~~~------------~~~cl~TGSWDKTlKfWD~R~~~pv~t~~LPeRvYa~Dv  164 (347)
T KOG0647|consen  101 LASGQ---VSQV-AAHDAPVKTCHWVPGM------------NYQCLVTGSWDKTLKFWDTRSSNPVATLQLPERVYAADV  164 (347)
T ss_pred             ccCCC---eeee-eecccceeEEEEecCC------------CcceeEecccccceeecccCCCCeeeeeeccceeeehhc
Confidence            98652   2333 3799999999998754            1368999999999999998764210           000


Q ss_pred             ---------------cc-------ccccC----CCceeEEEeeCCCCCCccEEEEEecCCeEEEEEeccCCcceeeeeec
Q 022111          202 ---------------FP-------ALQMH----SDWVRSVAWAPNLGLPKSTIASASQDGTVVIWTCAKEGEQWEGRVLK  255 (302)
Q Consensus       202 ---------------~~-------~~~~h----~~~v~~v~~~p~~~~~~~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~  255 (302)
                                     +.       .++.+    +-.++||+..+|.    ...|-||-.|.+-|..+...... ..-..+
T Consensus       165 ~~pm~vVata~r~i~vynL~n~~te~k~~~SpLk~Q~R~va~f~d~----~~~alGsiEGrv~iq~id~~~~~-~nFtFk  239 (347)
T KOG0647|consen  165 LYPMAVVATAERHIAVYNLENPPTEFKRIESPLKWQTRCVACFQDK----DGFALGSIEGRVAIQYIDDPNPK-DNFTFK  239 (347)
T ss_pred             cCceeEEEecCCcEEEEEcCCCcchhhhhcCcccceeeEEEEEecC----CceEeeeecceEEEEecCCCCcc-CceeEE
Confidence                           00       11122    2358999998885    44689999999999998763111 000112


Q ss_pred             cCC------C---cEEEEEEccCCCEEEEecCC-ceEEeeec
Q 022111          256 DFK------T---PVWSVSWSLTGNLLAVADAN-NVTLWKEA  287 (302)
Q Consensus       256 ~~~------~---~v~~~~~spdg~~la~~~~d-~i~~w~~~  287 (302)
                      .|.      .   .|.+|+|+|.-..|+++++| ...+||-.
T Consensus       240 CHR~~~~~~~~VYaVNsi~FhP~hgtlvTaGsDGtf~FWDkd  281 (347)
T KOG0647|consen  240 CHRSTNSVNDDVYAVNSIAFHPVHGTLVTAGSDGTFSFWDKD  281 (347)
T ss_pred             EeccCCCCCCceEEecceEeecccceEEEecCCceEEEecch
Confidence            221      1   36789999987788888888 79999964

>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]

Probab=99.85  E-value=3.9e-20  Score=159.47  Aligned_cols=244  Identities=17%  Similarity=0.262  Sum_probs=181.4

Q ss_pred             ccccceeEEEEccCCCEEEEeeCCCcEEEEeecCCC-ceEEEEec--CcccCeEEEEeeCCCCCCEEEEEeCCCeEEEEE
Q 022111            9 GHEDTVHDVAMDFYGKRLATASSDSSIKIIGLSNSA-SQHLATLK--GHRGPVWQVAWAHPKFGSILASCSYDGQVIIWK   85 (302)
Q Consensus         9 ~h~~~v~~~~~s~~~~~l~s~~~d~~v~lw~~~~~~-~~~~~~~~--~h~~~v~~v~~~~~~~~~~l~s~s~D~~i~iwd   85 (302)
                      .|...|-.+.+|...+++.+||. |-|+|||+.... ..++..|.  .-...|+++...++  |+.|++|++-.++-|||
T Consensus       417 ~HGEvVcAvtIS~~trhVyTgGk-gcVKVWdis~pg~k~PvsqLdcl~rdnyiRSckL~pd--grtLivGGeastlsiWD  493 (705)
T KOG0639|consen  417 AHGEVVCAVTISNPTRHVYTGGK-GCVKVWDISQPGNKSPVSQLDCLNRDNYIRSCKLLPD--GRTLIVGGEASTLSIWD  493 (705)
T ss_pred             ccCcEEEEEEecCCcceeEecCC-CeEEEeeccCCCCCCccccccccCcccceeeeEecCC--CceEEeccccceeeeee
Confidence            67777888889988999999985 569999996532 22333332  24567888887764  88999999999999999


Q ss_pred             cCCCCceeEEEEecCCCCCeeEEEecCCCCCcEEEEEecCCcEEEEEecCCCCeeeeeecccCCCCeEEEEeCCCCCCCc
Q 022111           86 EGNQNDWTQAHTFNDHKSSVNSIAWAPHELGLSLACGSSDGNISVFTATADGGWDTTRIDQAHPVGVTSVSWAPAMAPGA  165 (302)
Q Consensus        86 ~~~~~~~~~~~~~~~h~~~i~~l~~~pd~~~~~l~sg~~d~~v~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~  165 (302)
                      +..... .....+.-....-.+++.+||  .+...++..||+|.|||+....  ....+ ++|+..+.|+..+++     
T Consensus       494 LAapTp-rikaeltssapaCyALa~spD--akvcFsccsdGnI~vwDLhnq~--~Vrqf-qGhtDGascIdis~d-----  562 (705)
T KOG0639|consen  494 LAAPTP-RIKAELTSSAPACYALAISPD--AKVCFSCCSDGNIAVWDLHNQT--LVRQF-QGHTDGASCIDISKD-----  562 (705)
T ss_pred             ccCCCc-chhhhcCCcchhhhhhhcCCc--cceeeeeccCCcEEEEEcccce--eeecc-cCCCCCceeEEecCC-----
Confidence            976432 112223322334567888999  4578888999999999997542  22344 499999999988875     


Q ss_pred             eeecccCCCceeEEEeeCCCcEEEEEEecCccccccccccccCCCceeEEEeeCCCCCCccEEEEEecCCeEEEEEeccC
Q 022111          166 LVGLGLLDPVQKLASCGCDNTVKVWKMYNGIWKMDCFPALQMHSDWVRSVAWAPNLGLPKSTIASASQDGTVVIWTCAKE  245 (302)
Q Consensus       166 ~~~~~~~~~~~~l~s~~~D~~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~l~s~s~D~~i~iwd~~~~  245 (302)
                               |..|-|||.|++||-||++++.....     ....+.|.++.++|++    ..|+.|-+.+.+.|-.....
T Consensus       563 ---------GtklWTGGlDntvRcWDlregrqlqq-----hdF~SQIfSLg~cP~~----dWlavGMens~vevlh~skp  624 (705)
T KOG0639|consen  563 ---------GTKLWTGGLDNTVRCWDLREGRQLQQ-----HDFSSQIFSLGYCPTG----DWLAVGMENSNVEVLHTSKP  624 (705)
T ss_pred             ---------CceeecCCCccceeehhhhhhhhhhh-----hhhhhhheecccCCCc----cceeeecccCcEEEEecCCc
Confidence                     47899999999999999998732111     1235789999999995    78999999998766554432


Q ss_pred             CcceeeeeeccCCCcEEEEEEccCCCEEEEecCC-ceEEeeecC
Q 022111          246 GEQWEGRVLKDFKTPVWSVSWSLTGNLLAVADAN-NVTLWKEAV  288 (302)
Q Consensus       246 ~~~~~~~~~~~~~~~v~~~~~spdg~~la~~~~d-~i~~w~~~~  288 (302)
                      .    ...+.-|+.-|.++.|++.|+++++.+.| -+..|.+.-
T Consensus       625 ~----kyqlhlheScVLSlKFa~cGkwfvStGkDnlLnawrtPy  664 (705)
T KOG0639|consen  625 E----KYQLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPY  664 (705)
T ss_pred             c----ceeecccccEEEEEEecccCceeeecCchhhhhhccCcc
Confidence            1    13345677889999999999999999888 488898743

>KOG2055 consensus WD40 repeat protein [General function prediction only]

Probab=99.85  E-value=1.9e-19  Score=153.70  Aligned_cols=252  Identities=13%  Similarity=0.135  Sum_probs=176.0

Q ss_pred             ccceeEEEEccCCCEEEEeeCCCcEEEEeecCCCceEEEEecCcccCeEEEEeeCCCCCC-EEEEEeCCCeEEEEEcCCC
Q 022111           11 EDTVHDVAMDFYGKRLATASSDSSIKIIGLSNSASQHLATLKGHRGPVWQVAWAHPKFGS-ILASCSYDGQVIIWKEGNQ   89 (302)
Q Consensus        11 ~~~v~~~~~s~~~~~l~s~~~d~~v~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~-~l~s~s~D~~i~iwd~~~~   89 (302)
                      .+.|+++.|+|....|++||.|++++||.++++..+.+.++.--.-+|.+.+|.+.  |. .+++++.-..+..||+.+.
T Consensus       213 ~~~I~sv~FHp~~plllvaG~d~~lrifqvDGk~N~~lqS~~l~~fPi~~a~f~p~--G~~~i~~s~rrky~ysyDle~a  290 (514)
T KOG2055|consen  213 HGGITSVQFHPTAPLLLVAGLDGTLRIFQVDGKVNPKLQSIHLEKFPIQKAEFAPN--GHSVIFTSGRRKYLYSYDLETA  290 (514)
T ss_pred             cCCceEEEecCCCceEEEecCCCcEEEEEecCccChhheeeeeccCccceeeecCC--CceEEEecccceEEEEeecccc
Confidence            45899999999999999999999999999988766667777666778999999764  66 8899999999999998653


Q ss_pred             Ccee----------------------------------EE--------EEecCCCCCeeEEEecCCCCCcEEEEEecCCc
Q 022111           90 NDWT----------------------------------QA--------HTFNDHKSSVNSIAWAPHELGLSLACGSSDGN  127 (302)
Q Consensus        90 ~~~~----------------------------------~~--------~~~~~h~~~i~~l~~~pd~~~~~l~sg~~d~~  127 (302)
                      ...+                                  .+        .+++ .++.|..+.|+.|  ++.|..++.+|.
T Consensus       291 k~~k~~~~~g~e~~~~e~FeVShd~~fia~~G~~G~I~lLhakT~eli~s~K-ieG~v~~~~fsSd--sk~l~~~~~~Ge  367 (514)
T KOG2055|consen  291 KVTKLKPPYGVEEKSMERFEVSHDSNFIAIAGNNGHIHLLHAKTKELITSFK-IEGVVSDFTFSSD--SKELLASGGTGE  367 (514)
T ss_pred             ccccccCCCCcccchhheeEecCCCCeEEEcccCceEEeehhhhhhhhheee-eccEEeeEEEecC--CcEEEEEcCCce
Confidence            2100                                  00        0111 3477889999977  678888888999


Q ss_pred             EEEEEecCCCCeeeeeecccCCCCeEEEEeCCCCCCCceeecccCCCceeEEEeeCCCcEEEEEEecCc--ccccccccc
Q 022111          128 ISVFTATADGGWDTTRIDQAHPVGVTSVSWAPAMAPGALVGLGLLDPVQKLASCGCDNTVKVWKMYNGI--WKMDCFPAL  205 (302)
Q Consensus       128 v~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~D~~v~iwd~~~~~--~~~~~~~~~  205 (302)
                      |.+|+++.........- ++. ..-++++-+++              +.+||+|+..|.|.|||..+..  .+.+.+.++
T Consensus       368 V~v~nl~~~~~~~rf~D-~G~-v~gts~~~S~n--------------g~ylA~GS~~GiVNIYd~~s~~~s~~PkPik~~  431 (514)
T KOG2055|consen  368 VYVWNLRQNSCLHRFVD-DGS-VHGTSLCISLN--------------GSYLATGSDSGIVNIYDGNSCFASTNPKPIKTV  431 (514)
T ss_pred             EEEEecCCcceEEEEee-cCc-cceeeeeecCC--------------CceEEeccCcceEEEeccchhhccCCCCchhhh
Confidence            99999986533322221 121 11244444443              5799999999999999976432  122334445


Q ss_pred             ccCCCceeEEEeeCCCCCCccEEEEEecCCeEEEEEeccCCcceeeeee--ccCCCcEEEEEEccCCCEEEEecCC-ceE
Q 022111          206 QMHSDWVRSVAWAPNLGLPKSTIASASQDGTVVIWTCAKEGEQWEGRVL--KDFKTPVWSVSWSLTGNLLAVADAN-NVT  282 (302)
Q Consensus       206 ~~h~~~v~~v~~~p~~~~~~~~l~s~s~D~~i~iwd~~~~~~~~~~~~~--~~~~~~v~~~~~spdg~~la~~~~d-~i~  282 (302)
                      ..-...|+++.|+||.+.  -.|+|-..+..+|+-.+-+..-.  ....  ..--+.|.+++|||.|-++|+|..+ .+.
T Consensus       432 dNLtt~Itsl~Fn~d~qi--LAiaS~~~knalrLVHvPS~TVF--sNfP~~n~~vg~vtc~aFSP~sG~lAvGNe~grv~  507 (514)
T KOG2055|consen  432 DNLTTAITSLQFNHDAQI--LAIASRVKKNALRLVHVPSCTVF--SNFPTSNTKVGHVTCMAFSPNSGYLAVGNEAGRVH  507 (514)
T ss_pred             hhhheeeeeeeeCcchhh--hhhhhhccccceEEEeccceeee--ccCCCCCCcccceEEEEecCCCceEEeecCCCcee
Confidence            555667999999999632  22444445778998776542100  0000  1112458999999999999999888 799


Q ss_pred             Eeeec
Q 022111          283 LWKEA  287 (302)
Q Consensus       283 ~w~~~  287 (302)
                      ||+.+
T Consensus       508 l~kL~  512 (514)
T KOG2055|consen  508 LFKLH  512 (514)
T ss_pred             eEeec
Confidence            99875

>KOG0294 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.85  E-value=2.6e-19  Score=146.34  Aligned_cols=222  Identities=20%  Similarity=0.332  Sum_probs=161.0

Q ss_pred             EEEeeCCCcEEEEeecCCC----------ceEEEEecCcccCeEEEEeeCCCCCCEEEEEeCCCeEEEEEcCCCCceeEE
Q 022111           26 LATASSDSSIKIIGLSNSA----------SQHLATLKGHRGPVWQVAWAHPKFGSILASCSYDGQVIIWKEGNQNDWTQA   95 (302)
Q Consensus        26 l~s~~~d~~v~lw~~~~~~----------~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~s~D~~i~iwd~~~~~~~~~~   95 (302)
                      +++|++...|.=+++.-++          ..++..+.+|.++|++++.+    +.++||||.|-+|+|||++...   ..
T Consensus         4 iIvGtYE~~i~Gf~l~~~~~~~~~s~~~~l~~lF~~~aH~~sitavAVs----~~~~aSGssDetI~IYDm~k~~---ql   76 (362)
T KOG0294|consen    4 IIVGTYEHVILGFKLDPEPKGCTDSVKPTLKPLFAFSAHAGSITALAVS----GPYVASGSSDETIHIYDMRKRK---QL   76 (362)
T ss_pred             EEEeeeeeEEEEEEeccCccccccccceeeeccccccccccceeEEEec----ceeEeccCCCCcEEEEeccchh---hh
Confidence            4567777655555442211          12366778999999999985    6899999999999999997753   45


Q ss_pred             EEecCCCCCeeEEEecCCCCCcEEEEEecCCcEEEEEecCCCCeeeeeecccCCCCeEEEEeCCCCCCCceeecccCCCc
Q 022111           96 HTFNDHKSSVNSIAWAPHELGLSLACGSSDGNISVFTATADGGWDTTRIDQAHPVGVTSVSWAPAMAPGALVGLGLLDPV  175 (302)
Q Consensus        96 ~~~~~h~~~i~~l~~~pd~~~~~l~sg~~d~~v~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~  175 (302)
                      ..+-.|.+.|++|.|.|+.....|++|+.||.|.+|+..   .|.......+|..+|+.++..|.+              
T Consensus        77 g~ll~HagsitaL~F~~~~S~shLlS~sdDG~i~iw~~~---~W~~~~slK~H~~~Vt~lsiHPS~--------------  139 (362)
T KOG0294|consen   77 GILLSHAGSITALKFYPPLSKSHLLSGSDDGHIIIWRVG---SWELLKSLKAHKGQVTDLSIHPSG--------------  139 (362)
T ss_pred             cceeccccceEEEEecCCcchhheeeecCCCcEEEEEcC---CeEEeeeecccccccceeEecCCC--------------
Confidence            566679999999999987544479999999999999864   466544445899999999999874              


Q ss_pred             eeEEEeeCCCcEEEEEEecCccccccccccccCCCceeEEEeeCCCCCCccEEEEEecCCeEEEEEeccCCcceeeeeec
Q 022111          176 QKLASCGCDNTVKVWKMYNGIWKMDCFPALQMHSDWVRSVAWAPNLGLPKSTIASASQDGTVVIWTCAKEGEQWEGRVLK  255 (302)
Q Consensus       176 ~~l~s~~~D~~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~  255 (302)
                      ++-++.+.|+.+++|++-.+...+.+  .+ .+.  -..|.|+|+|    .+++.++.++ |-||.+...      .+..
T Consensus       140 KLALsVg~D~~lr~WNLV~Gr~a~v~--~L-~~~--at~v~w~~~G----d~F~v~~~~~-i~i~q~d~A------~v~~  203 (362)
T KOG0294|consen  140 KLALSVGGDQVLRTWNLVRGRVAFVL--NL-KNK--ATLVSWSPQG----DHFVVSGRNK-IDIYQLDNA------SVFR  203 (362)
T ss_pred             ceEEEEcCCceeeeehhhcCccceee--cc-CCc--ceeeEEcCCC----CEEEEEeccE-EEEEecccH------hHhh
Confidence            77788899999999999876432211  11 122  2349999986    6677776665 678877642      1222


Q ss_pred             cC--CCcEEEEEEccCCCEEEEecCC-ceEEeeecC
Q 022111          256 DF--KTPVWSVSWSLTGNLLAVADAN-NVTLWKEAV  288 (302)
Q Consensus       256 ~~--~~~v~~~~~spdg~~la~~~~d-~i~~w~~~~  288 (302)
                      ..  ...+.++.|- ++..|++|.+| .|++||...
T Consensus       204 ~i~~~~r~l~~~~l-~~~~L~vG~d~~~i~~~D~ds  238 (362)
T KOG0294|consen  204 EIENPKRILCATFL-DGSELLVGGDNEWISLKDTDS  238 (362)
T ss_pred             hhhccccceeeeec-CCceEEEecCCceEEEeccCC
Confidence            22  2346667774 56788888888 799999764

>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein

Probab=99.85  E-value=3.8e-18  Score=146.80  Aligned_cols=238  Identities=14%  Similarity=0.120  Sum_probs=154.0

Q ss_pred             ceeEEEEccCCCEE-EEeeCCCcEEEEeecCCCceEEEEecCcccCeEEEEeeCCCCCCEE-EEEeCCCeEEEEEcCCCC
Q 022111           13 TVHDVAMDFYGKRL-ATASSDSSIKIIGLSNSASQHLATLKGHRGPVWQVAWAHPKFGSIL-ASCSYDGQVIIWKEGNQN   90 (302)
Q Consensus        13 ~v~~~~~s~~~~~l-~s~~~d~~v~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l-~s~s~D~~i~iwd~~~~~   90 (302)
                      .+.+++|+++++.+ ++++.++.|++||....  +....+..+.. +..++|+++  ++.+ ++++.|+.+++||+++..
T Consensus        32 ~~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~~--~~~~~~~~~~~-~~~~~~~~~--g~~l~~~~~~~~~l~~~d~~~~~  106 (300)
T TIGR03866        32 RPRGITLSKDGKLLYVCASDSDTIQVIDLATG--EVIGTLPSGPD-PELFALHPN--GKILYIANEDDNLVTVIDIETRK  106 (300)
T ss_pred             CCCceEECCCCCEEEEEECCCCeEEEEECCCC--cEEEeccCCCC-ccEEEECCC--CCEEEEEcCCCCeEEEEECCCCe
Confidence            46779999999876 56678899999998653  33444544433 457888754  5655 555678999999997642


Q ss_pred             ceeEEEEecCCCCCeeEEEecCCCCCcEEEEEecCC-cEEEEEecCCCCeeeeeecccCCCCeEEEEeCCCCCCCceeec
Q 022111           91 DWTQAHTFNDHKSSVNSIAWAPHELGLSLACGSSDG-NISVFTATADGGWDTTRIDQAHPVGVTSVSWAPAMAPGALVGL  169 (302)
Q Consensus        91 ~~~~~~~~~~h~~~i~~l~~~pd~~~~~l~sg~~d~-~v~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~  169 (302)
                         .+..+. +...+.+++|+|+  +..+++++.++ .+.+||..+...  .....  .......+.|+|++        
T Consensus       107 ---~~~~~~-~~~~~~~~~~~~d--g~~l~~~~~~~~~~~~~d~~~~~~--~~~~~--~~~~~~~~~~s~dg--------  168 (300)
T TIGR03866       107 ---VLAEIP-VGVEPEGMAVSPD--GKIVVNTSETTNMAHFIDTKTYEI--VDNVL--VDQRPRFAEFTADG--------  168 (300)
T ss_pred             ---EEeEee-CCCCcceEEECCC--CCEEEEEecCCCeEEEEeCCCCeE--EEEEE--cCCCccEEEECCCC--------
Confidence               344444 2344688999998  66788877765 466678653211  11111  12234667888764        


Q ss_pred             ccCCCceeE-EEeeCCCcEEEEEEecCccccccccccc-----cCCC--ceeEEEeeCCCCCCccE-EEEEecCCeEEEE
Q 022111          170 GLLDPVQKL-ASCGCDNTVKVWKMYNGIWKMDCFPALQ-----MHSD--WVRSVAWAPNLGLPKST-IASASQDGTVVIW  240 (302)
Q Consensus       170 ~~~~~~~~l-~s~~~D~~v~iwd~~~~~~~~~~~~~~~-----~h~~--~v~~v~~~p~~~~~~~~-l~s~s~D~~i~iw  240 (302)
                            +.| +++..++.|++||+.++..    +..+.     .+..  ....++|+|++    +. +++.+.++.+.+|
T Consensus       169 ------~~l~~~~~~~~~v~i~d~~~~~~----~~~~~~~~~~~~~~~~~~~~i~~s~dg----~~~~~~~~~~~~i~v~  234 (300)
T TIGR03866       169 ------KELWVSSEIGGTVSVIDVATRKV----IKKITFEIPGVHPEAVQPVGIKLTKDG----KTAFVALGPANRVAVV  234 (300)
T ss_pred             ------CEEEEEcCCCCEEEEEEcCccee----eeeeeecccccccccCCccceEECCCC----CEEEEEcCCCCeEEEE
Confidence                  445 5666799999999987531    11111     1111  23468899986    44 4555567789999


Q ss_pred             EeccCCcceeeeeeccCCCcEEEEEEccCCCEEEEecC-C-ceEEeeecCCce
Q 022111          241 TCAKEGEQWEGRVLKDFKTPVWSVSWSLTGNLLAVADA-N-NVTLWKEAVDGE  291 (302)
Q Consensus       241 d~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~la~~~~-d-~i~~w~~~~~~~  291 (302)
                      |+++...  ....  .....+++++|+|+|++|+++.. + .|++||......
T Consensus       235 d~~~~~~--~~~~--~~~~~~~~~~~~~~g~~l~~~~~~~~~i~v~d~~~~~~  283 (300)
T TIGR03866       235 DAKTYEV--LDYL--LVGQRVWQLAFTPDEKYLLTTNGVSNDVSVIDVAALKV  283 (300)
T ss_pred             ECCCCcE--EEEE--EeCCCcceEEECCCCCEEEEEcCCCCeEEEEECCCCcE
Confidence            9864321  1111  23346889999999999988743 4 799999865433

Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.

>KOG2048 consensus WD40 repeat protein [General function prediction only]

Probab=99.85  E-value=1.7e-18  Score=154.02  Aligned_cols=255  Identities=23%  Similarity=0.304  Sum_probs=186.3

Q ss_pred             cceeEEEEccCCCEEEEeeCCCcEEEEeecCCCceEEEEecCcc-cCeEEEEeeCCCCCCEEEEEeCCCeEEEEEcCCCC
Q 022111           12 DTVHDVAMDFYGKRLATASSDSSIKIIGLSNSASQHLATLKGHR-GPVWQVAWAHPKFGSILASCSYDGQVIIWKEGNQN   90 (302)
Q Consensus        12 ~~v~~~~~s~~~~~l~s~~~d~~v~lw~~~~~~~~~~~~~~~h~-~~v~~v~~~~~~~~~~l~s~s~D~~i~iwd~~~~~   90 (302)
                      .+|++++|+...+.||.+=.||+|.+|++..... ....+.+++ ..|.+++|++   +..|+|.+.+|+|.-||+.+.+
T Consensus        26 s~I~slA~s~kS~~lAvsRt~g~IEiwN~~~~w~-~~~vi~g~~drsIE~L~W~e---~~RLFS~g~sg~i~EwDl~~lk  101 (691)
T KOG2048|consen   26 SEIVSLAYSHKSNQLAVSRTDGNIEIWNLSNNWF-LEPVIHGPEDRSIESLAWAE---GGRLFSSGLSGSITEWDLHTLK  101 (691)
T ss_pred             cceEEEEEeccCCceeeeccCCcEEEEccCCCce-eeEEEecCCCCceeeEEEcc---CCeEEeecCCceEEEEecccCc
Confidence            5789999999999999999999999999976432 334555554 5689999973   6788999999999999998764


Q ss_pred             ceeEEEEecCCCCCeeEEEecCCCCCcEEEEEecCCcEEEEEecCCCCeeeeeecccCCCCeEEEEeCCCCCCCceeecc
Q 022111           91 DWTQAHTFNDHKSSVNSIAWAPHELGLSLACGSSDGNISVFTATADGGWDTTRIDQAHPVGVTSVSWAPAMAPGALVGLG  170 (302)
Q Consensus        91 ~~~~~~~~~~h~~~i~~l~~~pd~~~~~l~sg~~d~~v~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~  170 (302)
                         +...+....+.|.+++.+|.  +..++.|+.||.+..++...+ ...........+..+.++.|+|++         
T Consensus       102 ---~~~~~d~~gg~IWsiai~p~--~~~l~IgcddGvl~~~s~~p~-~I~~~r~l~rq~sRvLslsw~~~~---------  166 (691)
T KOG2048|consen  102 ---QKYNIDSNGGAIWSIAINPE--NTILAIGCDDGVLYDFSIGPD-KITYKRSLMRQKSRVLSLSWNPTG---------  166 (691)
T ss_pred             ---eeEEecCCCcceeEEEeCCc--cceEEeecCCceEEEEecCCc-eEEEEeecccccceEEEEEecCCc---------
Confidence               45556666789999999997  468999999997766665533 222222211345679999999874         


Q ss_pred             cCCCceeEEEeeCCCcEEEEEEecCccccc---ccccccc-CCCceeEEEeeCCCCCCccEEEEEecCCeEEEEEeccCC
Q 022111          171 LLDPVQKLASCGCDNTVKVWKMYNGIWKMD---CFPALQM-HSDWVRSVAWAPNLGLPKSTIASASQDGTVVIWTCAKEG  246 (302)
Q Consensus       171 ~~~~~~~l~s~~~D~~v~iwd~~~~~~~~~---~~~~~~~-h~~~v~~v~~~p~~~~~~~~l~s~s~D~~i~iwd~~~~~  246 (302)
                           ..|++|+.||.|++||+..+.....   .+..+.. ..--|.+|.|-.+     .+|++|..-|+|++||.....
T Consensus       167 -----~~i~~Gs~Dg~Iriwd~~~~~t~~~~~~~~d~l~k~~~~iVWSv~~Lrd-----~tI~sgDS~G~V~FWd~~~gT  236 (691)
T KOG2048|consen  167 -----TKIAGGSIDGVIRIWDVKSGQTLHIITMQLDRLSKREPTIVWSVLFLRD-----STIASGDSAGTVTFWDSIFGT  236 (691)
T ss_pred             -----cEEEecccCceEEEEEcCCCceEEEeeecccccccCCceEEEEEEEeec-----CcEEEecCCceEEEEcccCcc
Confidence                 6799999999999999987742210   0111111 2334667766544     579999999999999976432


Q ss_pred             cceeeeeeccCCCcEEEEEEccCCCEEEEecCC-ceEEeeecCCce-EEEeeec
Q 022111          247 EQWEGRVLKDFKTPVWSVSWSLTGNLLAVADAN-NVTLWKEAVDGE-WQQVSVV  298 (302)
Q Consensus       247 ~~~~~~~~~~~~~~v~~~~~spdg~~la~~~~d-~i~~w~~~~~~~-~~~~~~~  298 (302)
                      .   ......|...|.+++-+++++++.+|+-| .+..+....++. |+..+.-
T Consensus       237 L---iqS~~~h~adVl~Lav~~~~d~vfsaGvd~~ii~~~~~~~~~~wv~~~~r  287 (691)
T KOG2048|consen  237 L---IQSHSCHDADVLALAVADNEDRVFSAGVDPKIIQYSLTTNKSEWVINSRR  287 (691)
T ss_pred             h---hhhhhhhhcceeEEEEcCCCCeEEEccCCCceEEEEecCCccceeeeccc
Confidence            1   12234566789999999999999999888 787777755544 8776543

>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]

Probab=99.85  E-value=8.3e-19  Score=143.53  Aligned_cols=203  Identities=18%  Similarity=0.298  Sum_probs=144.3

Q ss_pred             ccccccccceeEEEEccCCCEEEEeeCCCcEEEEeecCCCceEEEEecCcccCeEEEEeeCCCCCCEEEEEeCCCeEEEE
Q 022111            5 KIETGHEDTVHDVAMDFYGKRLATASSDSSIKIIGLSNSASQHLATLKGHRGPVWQVAWAHPKFGSILASCSYDGQVIIW   84 (302)
Q Consensus         5 ~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~s~D~~i~iw   84 (302)
                      +.+.||++.|++|+.+|-++.++|++.|++||+||+.....+.+..+.  ..+  .++|.|.  |-++|++.....|+||
T Consensus        94 RYF~GH~~~V~sL~~sP~~d~FlS~S~D~tvrLWDlR~~~cqg~l~~~--~~p--i~AfDp~--GLifA~~~~~~~IkLy  167 (311)
T KOG1446|consen   94 RYFPGHKKRVNSLSVSPKDDTFLSSSLDKTVRLWDLRVKKCQGLLNLS--GRP--IAAFDPE--GLIFALANGSELIKLY  167 (311)
T ss_pred             EEcCCCCceEEEEEecCCCCeEEecccCCeEEeeEecCCCCceEEecC--CCc--ceeECCC--CcEEEEecCCCeEEEE
Confidence            457899999999999999999999999999999999755443333222  223  3677653  8888888887799999


Q ss_pred             EcCCCCceeEEEEec---CCCCCeeEEEecCCCCCcEEEEEecCCcEEEEEecCCCCeeeeeecccCCCC---eEEEEeC
Q 022111           85 KEGNQNDWTQAHTFN---DHKSSVNSIAWAPHELGLSLACGSSDGNISVFTATADGGWDTTRIDQAHPVG---VTSVSWA  158 (302)
Q Consensus        85 d~~~~~~~~~~~~~~---~h~~~i~~l~~~pd~~~~~l~sg~~d~~v~~~~~~~~~~~~~~~~~~~h~~~---v~~~~~~  158 (302)
                      |++.-.. .+..++.   +-+...+.+.|+||  |+.++.+...+.+.+.|.-.+..  ...+. .++..   -.+..|.
T Consensus       168 D~Rs~dk-gPF~tf~i~~~~~~ew~~l~FS~d--GK~iLlsT~~s~~~~lDAf~G~~--~~tfs-~~~~~~~~~~~a~ft  241 (311)
T KOG1446|consen  168 DLRSFDK-GPFTTFSITDNDEAEWTDLEFSPD--GKSILLSTNASFIYLLDAFDGTV--KSTFS-GYPNAGNLPLSATFT  241 (311)
T ss_pred             EecccCC-CCceeEccCCCCccceeeeEEcCC--CCEEEEEeCCCcEEEEEccCCcE--eeeEe-eccCCCCcceeEEEC
Confidence            9975321 2333333   34678899999998  77888888899998887654321  11221 22111   1344555


Q ss_pred             CCCCCCceeecccCCCceeEEEeeCCCcEEEEEEecCcccccccccccc-CCCceeEEEeeCCCCCCccEEEEEecCCeE
Q 022111          159 PAMAPGALVGLGLLDPVQKLASCGCDNTVKVWKMYNGIWKMDCFPALQM-HSDWVRSVAWAPNLGLPKSTIASASQDGTV  237 (302)
Q Consensus       159 ~~~~~~~~~~~~~~~~~~~l~s~~~D~~v~iwd~~~~~~~~~~~~~~~~-h~~~v~~v~~~p~~~~~~~~l~s~s~D~~i  237 (302)
                      |+              ++++++|+.||+|.+|++.++.    .+..+.+ +.+++.|+.|+|..    .+++|  .+..+
T Consensus       242 Pd--------------s~Fvl~gs~dg~i~vw~~~tg~----~v~~~~~~~~~~~~~~~fnP~~----~mf~s--a~s~l  297 (311)
T KOG1446|consen  242 PD--------------SKFVLSGSDDGTIHVWNLETGK----KVAVLRGPNGGPVSCVRFNPRY----AMFVS--ASSNL  297 (311)
T ss_pred             CC--------------CcEEEEecCCCcEEEEEcCCCc----EeeEecCCCCCCccccccCCce----eeeee--cCceE
Confidence            54              6899999999999999998873    2344555 78889999999973    34544  46678


Q ss_pred             EEEEec
Q 022111          238 VIWTCA  243 (302)
Q Consensus       238 ~iwd~~  243 (302)
                      -+|-..
T Consensus       298 ~fw~p~  303 (311)
T KOG1446|consen  298 VFWLPD  303 (311)
T ss_pred             EEEecc
Confidence            888654

>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.85  E-value=1.4e-20  Score=175.85  Aligned_cols=247  Identities=19%  Similarity=0.383  Sum_probs=181.8

Q ss_pred             ceeEEEEccCCCE----EEEeeCCCcEEEEeecC----CCceEEEEecCcccCeEEEEeeCCCCCCEEEEEeCCCeEEEE
Q 022111           13 TVHDVAMDFYGKR----LATASSDSSIKIIGLSN----SASQHLATLKGHRGPVWQVAWAHPKFGSILASCSYDGQVIIW   84 (302)
Q Consensus        13 ~v~~~~~s~~~~~----l~s~~~d~~v~lw~~~~----~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~s~D~~i~iw   84 (302)
                      ..+.++|.+.+..    ||.|..||+|.+|+...    ...+.+.+...|++.|..+.|++. .+++||+|+.||.|.||
T Consensus        66 rF~kL~W~~~g~~~~GlIaGG~edG~I~ly~p~~~~~~~~~~~la~~~~h~G~V~gLDfN~~-q~nlLASGa~~geI~iW  144 (1049)
T KOG0307|consen   66 RFNKLAWGSYGSHSHGLIAGGLEDGNIVLYDPASIIANASEEVLATKSKHTGPVLGLDFNPF-QGNLLASGADDGEILIW  144 (1049)
T ss_pred             cceeeeecccCCCccceeeccccCCceEEecchhhccCcchHHHhhhcccCCceeeeecccc-CCceeeccCCCCcEEEe
Confidence            4577889887765    88889999999999743    223446677889999999999875 47899999999999999


Q ss_pred             EcCCCCceeEEEE-ecCCCCCeeEEEecCCCCCcEEEEEecCCcEEEEEecCCCCeeeeeecc-cCCCCeEEEEeCCCCC
Q 022111           85 KEGNQNDWTQAHT-FNDHKSSVNSIAWAPHELGLSLACGSSDGNISVFTATADGGWDTTRIDQ-AHPVGVTSVSWAPAMA  162 (302)
Q Consensus        85 d~~~~~~~~~~~~-~~~h~~~i~~l~~~pd~~~~~l~sg~~d~~v~~~~~~~~~~~~~~~~~~-~h~~~v~~~~~~~~~~  162 (302)
                      |++....  +..- -..-.+.|.+++|+... ..+||+++.++++.|||++.....  ..+.. .....+..+.|+|+. 
T Consensus       145 Dlnn~~t--P~~~~~~~~~~eI~~lsWNrkv-qhILAS~s~sg~~~iWDlr~~~pi--i~ls~~~~~~~~S~l~WhP~~-  218 (1049)
T KOG0307|consen  145 DLNKPET--PFTPGSQAPPSEIKCLSWNRKV-SHILASGSPSGRAVIWDLRKKKPI--IKLSDTPGRMHCSVLAWHPDH-  218 (1049)
T ss_pred             ccCCcCC--CCCCCCCCCcccceEeccchhh-hHHhhccCCCCCceeccccCCCcc--cccccCCCccceeeeeeCCCC-
Confidence            9975321  1111 11245789999998642 457999999999999999865322  12211 112347899999975 


Q ss_pred             CCceeecccCCCceeEEEeeCCC---cEEEEEEecCccccccccccccCCCceeEEEeeCCCCCCccEEEEEecCCeEEE
Q 022111          163 PGALVGLGLLDPVQKLASCGCDN---TVKVWKMYNGIWKMDCFPALQMHSDWVRSVAWAPNLGLPKSTIASASQDGTVVI  239 (302)
Q Consensus       163 ~~~~~~~~~~~~~~~l~s~~~D~---~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~l~s~s~D~~i~i  239 (302)
                                  ..+|++++.|.   .|.+||++...   ..++.+++|...|.+++|++..   ..+++|++.|+.|.+
T Consensus       219 ------------aTql~~As~dd~~PviqlWDlR~as---sP~k~~~~H~~GilslsWc~~D---~~lllSsgkD~~ii~  280 (1049)
T KOG0307|consen  219 ------------ATQLLVASGDDSAPVIQLWDLRFAS---SPLKILEGHQRGILSLSWCPQD---PRLLLSSGKDNRIIC  280 (1049)
T ss_pred             ------------ceeeeeecCCCCCceeEeecccccC---CchhhhcccccceeeeccCCCC---chhhhcccCCCCeeE
Confidence                        35677776654   58899998653   3456778999999999999974   578999999999999


Q ss_pred             EEeccCCcceeeeeeccCCCcEEEEEEccCC-CEEEEecCC-ceEEeeec
Q 022111          240 WTCAKEGEQWEGRVLKDFKTPVWSVSWSLTG-NLLAVADAN-NVTLWKEA  287 (302)
Q Consensus       240 wd~~~~~~~~~~~~~~~~~~~v~~~~~spdg-~~la~~~~d-~i~~w~~~  287 (302)
                      |+..+..  ....+ .....++..+.|+|.. .++++++=+ .|-|+...
T Consensus       281 wN~~tgE--vl~~~-p~~~nW~fdv~w~pr~P~~~A~asfdgkI~I~sl~  327 (1049)
T KOG0307|consen  281 WNPNTGE--VLGEL-PAQGNWCFDVQWCPRNPSVMAAASFDGKISIYSLQ  327 (1049)
T ss_pred             ecCCCce--Eeeec-CCCCcceeeeeecCCCcchhhhheeccceeeeeee
Confidence            9987531  11111 2234678899999965 477777767 68888763

>KOG1273 consensus WD40 repeat protein [General function prediction only]

Probab=99.84  E-value=4.4e-19  Score=145.13  Aligned_cols=249  Identities=15%  Similarity=0.251  Sum_probs=165.0

Q ss_pred             eeEEEEccCCCEEEEeeCCCcEEEEeecCCCceEEEEecCcccCeEEEEeeCCCCCCEEEEEeCCCeEEEEEcCCCCcee
Q 022111           14 VHDVAMDFYGKRLATASSDSSIKIIGLSNSASQHLATLKGHRGPVWQVAWAHPKFGSILASCSYDGQVIIWKEGNQNDWT   93 (302)
Q Consensus        14 v~~~~~s~~~~~l~s~~~d~~v~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~s~D~~i~iwd~~~~~~~~   93 (302)
                      -.++.|++.|.+||+|+.||.|-|||+.+-  ..-..+.+|..+|.+++|+++  |+.|+|+|.|-.|++||+..+.   
T Consensus        26 a~~~~Fs~~G~~lAvGc~nG~vvI~D~~T~--~iar~lsaH~~pi~sl~WS~d--gr~LltsS~D~si~lwDl~~gs---   98 (405)
T KOG1273|consen   26 AECCQFSRWGDYLAVGCANGRVVIYDFDTF--RIARMLSAHVRPITSLCWSRD--GRKLLTSSRDWSIKLWDLLKGS---   98 (405)
T ss_pred             cceEEeccCcceeeeeccCCcEEEEEcccc--chhhhhhccccceeEEEecCC--CCEeeeecCCceeEEEeccCCC---
Confidence            567899999999999999999999999753  234568899999999999975  8999999999999999997654   


Q ss_pred             EEEEecCCCCCeeEEEecC---------------------------------------------CCCCcEEEEEecCCcE
Q 022111           94 QAHTFNDHKSSVNSIAWAP---------------------------------------------HELGLSLACGSSDGNI  128 (302)
Q Consensus        94 ~~~~~~~h~~~i~~l~~~p---------------------------------------------d~~~~~l~sg~~d~~v  128 (302)
                      +++.+. ...+|..+.|+|                                             +..|+++++|...|.+
T Consensus        99 ~l~rir-f~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~~h~~Lp~d~d~dln~sas~~~fdr~g~yIitGtsKGkl  177 (405)
T KOG1273|consen   99 PLKRIR-FDSPVWGAQWHPRKRNKCVATIMEESPVVIDFSDPKHSVLPKDDDGDLNSSASHGVFDRRGKYIITGTSKGKL  177 (405)
T ss_pred             ceeEEE-ccCccceeeeccccCCeEEEEEecCCcEEEEecCCceeeccCCCccccccccccccccCCCCEEEEecCcceE
Confidence            222222 122333333322                                             2346677777777777


Q ss_pred             EEEEecCCCCeeeeeecccCCCCeEEEEeCCCCCCCceeecccCCCceeEEEeeCCCcEEEEEEecCcc-----cccccc
Q 022111          129 SVFTATADGGWDTTRIDQAHPVGVTSVSWAPAMAPGALVGLGLLDPVQKLASCGCDNTVKVWKMYNGIW-----KMDCFP  203 (302)
Q Consensus       129 ~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~D~~v~iwd~~~~~~-----~~~~~~  203 (302)
                      -+|+..+....  ..++......|..+.++.              .+.+|+.-+.|+.||.|++..-..     .....+
T Consensus       178 lv~~a~t~e~v--as~rits~~~IK~I~~s~--------------~g~~liiNtsDRvIR~ye~~di~~~~r~~e~e~~~  241 (405)
T KOG1273|consen  178 LVYDAETLECV--ASFRITSVQAIKQIIVSR--------------KGRFLIINTSDRVIRTYEISDIDDEGRDGEVEPEH  241 (405)
T ss_pred             EEEecchheee--eeeeechheeeeEEEEec--------------cCcEEEEecCCceEEEEehhhhcccCccCCcChhH
Confidence            77776543211  111111123455555543              357899999999999999863210     011111


Q ss_pred             cccc--CCCceeEEEeeCCCCCCccEEEEEe-cCCeEEEEEeccCCcceeeeeeccCC-CcEEEEEEccCCCEEEEecCC
Q 022111          204 ALQM--HSDWVRSVAWAPNLGLPKSTIASAS-QDGTVVIWTCAKEGEQWEGRVLKDFK-TPVWSVSWSLTGNLLAVADAN  279 (302)
Q Consensus       204 ~~~~--h~~~v~~v~~~p~~~~~~~~l~s~s-~D~~i~iwd~~~~~~~~~~~~~~~~~-~~v~~~~~spdg~~la~~~~d  279 (302)
                      .+..  .+-.=++++|+.++    .++++++ ..+.+.||.-....   ..+++.+.+ .....+.|.|-...|++-.++
T Consensus       242 K~qDvVNk~~Wk~ccfs~dg----eYv~a~s~~aHaLYIWE~~~Gs---LVKILhG~kgE~l~DV~whp~rp~i~si~sg  314 (405)
T KOG1273|consen  242 KLQDVVNKLQWKKCCFSGDG----EYVCAGSARAHALYIWEKSIGS---LVKILHGTKGEELLDVNWHPVRPIIASIASG  314 (405)
T ss_pred             HHHHHHhhhhhhheeecCCc----cEEEeccccceeEEEEecCCcc---eeeeecCCchhheeecccccceeeeeeccCC
Confidence            1110  11122467888775    5666665 46689999865432   234555555 457889999988888888778


Q ss_pred             ceEEeeecCCceEE
Q 022111          280 NVTLWKEAVDGEWQ  293 (302)
Q Consensus       280 ~i~~w~~~~~~~~~  293 (302)
                      .+++|....-.-|-
T Consensus       315 ~v~iw~~~~~enws  328 (405)
T KOG1273|consen  315 VVYIWAVVQVENWS  328 (405)
T ss_pred             ceEEEEeecccchh
Confidence            99999876544443

>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]

Probab=99.84  E-value=7.8e-20  Score=157.40  Aligned_cols=240  Identities=18%  Similarity=0.262  Sum_probs=173.4

Q ss_pred             ceeEEEEccCCC-EEEEeeCCCcEEEEeecCCCc--eEEEEecCcccCeEEEEeeCCCCCCEEEEEeCCCeEEEEEcCCC
Q 022111           13 TVHDVAMDFYGK-RLATASSDSSIKIIGLSNSAS--QHLATLKGHRGPVWQVAWAHPKFGSILASCSYDGQVIIWKEGNQ   89 (302)
Q Consensus        13 ~v~~~~~s~~~~-~l~s~~~d~~v~lw~~~~~~~--~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~s~D~~i~iwd~~~~   89 (302)
                      .+.+++|+.... ..|+.+-|+.+++|.-..+.+  +.+..+.+..  -.|++..  ..+.++++|+..+.|+|||++..
T Consensus        36 g~~s~~w~~~n~lvvas~~gdk~~~~~~K~g~~~~Vp~~~k~~gd~--~~Cv~~~--s~S~y~~sgG~~~~Vkiwdl~~k  111 (673)
T KOG4378|consen   36 GDFSFNWQRRNFLVVASMAGDKVMRIKEKDGKTPEVPRVRKLTGDN--AFCVACA--SQSLYEISGGQSGCVKIWDLRAK  111 (673)
T ss_pred             cceeeeccccceEEEeecCCceeEEEecccCCCCccceeeccccch--HHHHhhh--hcceeeeccCcCceeeehhhHHH
Confidence            377888876552 334555788999997654322  2233444432  2333322  12578999999999999999743


Q ss_pred             CceeEEEEecCCCCCeeEEEecCCCCCcEEEEEecCCcEEEEEecCCCCeeeeeecccCCCCeEEEEeCCCCCCCceeec
Q 022111           90 NDWTQAHTFNDHKSSVNSIAWAPHELGLSLACGSSDGNISVFTATADGGWDTTRIDQAHPVGVTSVSWAPAMAPGALVGL  169 (302)
Q Consensus        90 ~~~~~~~~~~~h~~~i~~l~~~pd~~~~~l~sg~~d~~v~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~  169 (302)
                         .+...+++|+..|+++.++-.  ..+||+++..|-|.|-.+.+..  ....+.......|+-+.|+|...       
T Consensus       112 ---l~hr~lkdh~stvt~v~YN~~--DeyiAsvs~gGdiiih~~~t~~--~tt~f~~~sgqsvRll~ys~skr-------  177 (673)
T KOG4378|consen  112 ---LIHRFLKDHQSTVTYVDYNNT--DEYIASVSDGGDIIIHGTKTKQ--KTTTFTIDSGQSVRLLRYSPSKR-------  177 (673)
T ss_pred             ---HHhhhccCCcceeEEEEecCC--cceeEEeccCCcEEEEecccCc--cccceecCCCCeEEEeecccccc-------
Confidence               245567899999999999865  3489999999999998765432  22334323345577888988642       


Q ss_pred             ccCCCceeEEEeeCCCcEEEEEEecCccccccccccccCCCceeEEEeeCCCCCCccEEEEEecCCeEEEEEeccCCcce
Q 022111          170 GLLDPVQKLASCGCDNTVKVWKMYNGIWKMDCFPALQMHSDWVRSVAWAPNLGLPKSTIASASQDGTVVIWTCAKEGEQW  249 (302)
Q Consensus       170 ~~~~~~~~l~s~~~D~~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~l~s~s~D~~i~iwd~~~~~~~~  249 (302)
                            .+|.+++.+|.|.+||+....   ....-...|..+-..|+|+|..   +..|++.+.|+.|.+||.+....  
T Consensus       178 ------~lL~~asd~G~VtlwDv~g~s---p~~~~~~~HsAP~~gicfspsn---e~l~vsVG~Dkki~~yD~~s~~s--  243 (673)
T KOG4378|consen  178 ------FLLSIASDKGAVTLWDVQGMS---PIFHASEAHSAPCRGICFSPSN---EALLVSVGYDKKINIYDIRSQAS--  243 (673)
T ss_pred             ------eeeEeeccCCeEEEEeccCCC---cccchhhhccCCcCcceecCCc---cceEEEecccceEEEeecccccc--
Confidence                  468889999999999997542   1223346799999999999975   57899999999999999985321  


Q ss_pred             eeeeeccCCCcEEEEEEccCCCEEEEecCC-ceEEeee
Q 022111          250 EGRVLKDFKTPVWSVSWSLTGNLLAVADAN-NVTLWKE  286 (302)
Q Consensus       250 ~~~~~~~~~~~v~~~~~spdg~~la~~~~d-~i~~w~~  286 (302)
                      ...  ..+..|..+++|+++|.+|++|.++ .|..||+
T Consensus       244 ~~~--l~y~~Plstvaf~~~G~~L~aG~s~G~~i~YD~  279 (673)
T KOG4378|consen  244 TDR--LTYSHPLSTVAFSECGTYLCAGNSKGELIAYDM  279 (673)
T ss_pred             cce--eeecCCcceeeecCCceEEEeecCCceEEEEec
Confidence            111  2356789999999999999999888 6999997

>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]

Probab=99.84  E-value=5.5e-19  Score=142.98  Aligned_cols=254  Identities=23%  Similarity=0.383  Sum_probs=178.4

Q ss_pred             ccccccccceeEEEEccCC-CEEEEeeCC-------CcEEEEeecCCC-------ceEEEEec-CcccCeEEEEeeCCCC
Q 022111            5 KIETGHEDTVHDVAMDFYG-KRLATASSD-------SSIKIIGLSNSA-------SQHLATLK-GHRGPVWQVAWAHPKF   68 (302)
Q Consensus         5 ~~~~~h~~~v~~~~~s~~~-~~l~s~~~d-------~~v~lw~~~~~~-------~~~~~~~~-~h~~~v~~v~~~~~~~   68 (302)
                      +++..|.++|..++-+|.. +.|+++..+       ..+.||.+..+.       .+++..|. .|-+.|.++.|.|+  
T Consensus        57 kvf~h~agEvw~las~P~d~~ilaT~yn~~s~s~vl~~aaiw~ipe~~~~S~~~tlE~v~~Ldteavg~i~cvew~Pn--  134 (370)
T KOG1007|consen   57 KVFFHHAGEVWDLASSPFDQRILATVYNDTSDSGVLTGAAIWQIPEPLGQSNSSTLECVASLDTEAVGKINCVEWEPN--  134 (370)
T ss_pred             hhhhcCCcceehhhcCCCCCceEEEEEeccCCCcceeeEEEEecccccCccccchhhHhhcCCHHHhCceeeEEEcCC--
Confidence            3466788999999988865 566665432       236789884322       22344454 46678999999764  


Q ss_pred             CCEEEEEeCCCeEEEEEcCCCCcee-EE--EEecCCCCCeeEEEecCCCCCcEEEEEecCCcEEEEEecCCCCeeeeeec
Q 022111           69 GSILASCSYDGQVIIWKEGNQNDWT-QA--HTFNDHKSSVNSIAWAPHELGLSLACGSSDGNISVFTATADGGWDTTRID  145 (302)
Q Consensus        69 ~~~l~s~s~D~~i~iwd~~~~~~~~-~~--~~~~~h~~~i~~l~~~pd~~~~~l~sg~~d~~v~~~~~~~~~~~~~~~~~  145 (302)
                      +..|++-. |..|.+|++.+..... .+  ..-.++....++-+|+|...+..+++. .|+++..||.++..+  ...++
T Consensus       135 s~klasm~-dn~i~l~~l~ess~~vaev~ss~s~e~~~~ftsg~WspHHdgnqv~tt-~d~tl~~~D~RT~~~--~~sI~  210 (370)
T KOG1007|consen  135 SDKLASMD-DNNIVLWSLDESSKIVAEVLSSESAEMRHSFTSGAWSPHHDGNQVATT-SDSTLQFWDLRTMKK--NNSIE  210 (370)
T ss_pred             CCeeEEec-cCceEEEEcccCcchheeecccccccccceecccccCCCCccceEEEe-CCCcEEEEEccchhh--hcchh
Confidence            67777655 8899999987653211 00  111236677888899997667777775 588999999996543  23455


Q ss_pred             ccCCCCeEEEEeCCCCCCCceeecccCCCceeEEEeeCCCcEEEEEEecCccccccccccccCCCceeEEEeeCCCCCCc
Q 022111          146 QAHPVGVTSVSWAPAMAPGALVGLGLLDPVQKLASCGCDNTVKVWKMYNGIWKMDCFPALQMHSDWVRSVAWAPNLGLPK  225 (302)
Q Consensus       146 ~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~D~~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~  225 (302)
                      .+|...|..+.|+|..             ...|+||+.|+.|+|||.+...   ..+.++.+|..||.+|.|+|..   .
T Consensus       211 dAHgq~vrdlDfNpnk-------------q~~lvt~gDdgyvriWD~R~tk---~pv~el~~HsHWvW~VRfn~~h---d  271 (370)
T KOG1007|consen  211 DAHGQRVRDLDFNPNK-------------QHILVTCGDDGYVRIWDTRKTK---FPVQELPGHSHWVWAVRFNPEH---D  271 (370)
T ss_pred             hhhcceeeeccCCCCc-------------eEEEEEcCCCccEEEEeccCCC---ccccccCCCceEEEEEEecCcc---c
Confidence            5888889999999864             4679999999999999998754   3456788999999999999974   5


Q ss_pred             cEEEEEecCCeEEEEEeccCC----------------c-------ceee---eeeccCCCcEEEEEEcc-CCCEEEEecC
Q 022111          226 STIASASQDGTVVIWTCAKEG----------------E-------QWEG---RVLKDFKTPVWSVSWSL-TGNLLAVADA  278 (302)
Q Consensus       226 ~~l~s~s~D~~i~iwd~~~~~----------------~-------~~~~---~~~~~~~~~v~~~~~sp-dg~~la~~~~  278 (302)
                      ..|+||+.|..+-+|...+..                +       +.+.   ....+|++.|++++||. |-=++|+-+=
T Consensus       272 qLiLs~~SDs~V~Lsca~svSSE~qi~~~~dese~e~~dseer~kpL~dg~l~tydehEDSVY~~aWSsadPWiFASLSY  351 (370)
T KOG1007|consen  272 QLILSGGSDSAVNLSCASSVSSEQQIEFEDDESESEDEDSEERVKPLQDGQLETYDEHEDSVYALAWSSADPWIFASLSY  351 (370)
T ss_pred             eEEEecCCCceeEEEeccccccccccccccccccCcchhhHHhcccccccccccccccccceEEEeeccCCCeeEEEecc
Confidence            789999999999999764311                0       0000   01245678899999985 3344555555


Q ss_pred             C-ceEE
Q 022111          279 N-NVTL  283 (302)
Q Consensus       279 d-~i~~  283 (302)
                      | .+.|
T Consensus       352 DGRviI  357 (370)
T KOG1007|consen  352 DGRVII  357 (370)
T ss_pred             CceEEe
Confidence            5 3444

>KOG4328 consensus WD40 protein [Function unknown]

Probab=99.84  E-value=1.6e-19  Score=154.07  Aligned_cols=217  Identities=18%  Similarity=0.218  Sum_probs=153.5

Q ss_pred             EEecCcccCeEEEEeeCCCCCCEEEEEeCCCeEEEEEcCCC-CceeEEEEecCCCCCeeEEEecCCCCCcEEEEEecCCc
Q 022111           49 ATLKGHRGPVWQVAWAHPKFGSILASCSYDGQVIIWKEGNQ-NDWTQAHTFNDHKSSVNSIAWAPHELGLSLACGSSDGN  127 (302)
Q Consensus        49 ~~~~~h~~~v~~v~~~~~~~~~~l~s~s~D~~i~iwd~~~~-~~~~~~~~~~~h~~~i~~l~~~pd~~~~~l~sg~~d~~  127 (302)
                      ...+-|.+.|++++|.|...-++||+|..-|+|-+||+... .....+..+..|..+|.++.|+|... .++++.|.||+
T Consensus       180 ~v~kv~~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d~d~v~~f~~hs~~Vs~l~F~P~n~-s~i~ssSyDGt  258 (498)
T KOG4328|consen  180 NVAKVTDRRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEKDKDGVYLFTPHSGPVSGLKFSPANT-SQIYSSSYDGT  258 (498)
T ss_pred             ceeEecccceEEEEecccCcceEEEEccCCCcEEEEecCCCCCccCceEEeccCCccccceEecCCCh-hheeeeccCce
Confidence            34456889999999976432378999999999999999522 12234567788999999999999853 57899999999


Q ss_pred             EEEEEecCCCCeeeeeecccCCCCeEEEEeCCCCCCCceeecccCCCceeEEEeeCCCcEEEEEEecCcccccccccccc
Q 022111          128 ISVFTATADGGWDTTRIDQAHPVGVTSVSWAPAMAPGALVGLGLLDPVQKLASCGCDNTVKVWKMYNGIWKMDCFPALQM  207 (302)
Q Consensus       128 v~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~D~~v~iwd~~~~~~~~~~~~~~~~  207 (302)
                      |++-|++....-...... .-.....++.++.              ....++.+..=|.+.+||++.+..   .+..+..
T Consensus       259 iR~~D~~~~i~e~v~s~~-~d~~~fs~~d~~~--------------e~~~vl~~~~~G~f~~iD~R~~~s---~~~~~~l  320 (498)
T KOG4328|consen  259 IRLQDFEGNISEEVLSLD-TDNIWFSSLDFSA--------------ESRSVLFGDNVGNFNVIDLRTDGS---EYENLRL  320 (498)
T ss_pred             eeeeeecchhhHHHhhcC-ccceeeeeccccC--------------CCccEEEeecccceEEEEeecCCc---cchhhhh
Confidence            999988642110000110 0011122333322              234455665556899999997642   2344567


Q ss_pred             CCCceeEEEeeCCCCCCccEEEEEecCCeEEEEEeccCCcceee-eeeccCCCcEEEEEEccCCCEEEEecCC-ceEEee
Q 022111          208 HSDWVRSVAWAPNLGLPKSTIASASQDGTVVIWTCAKEGEQWEG-RVLKDFKTPVWSVSWSLTGNLLAVADAN-NVTLWK  285 (302)
Q Consensus       208 h~~~v~~v~~~p~~~~~~~~l~s~s~D~~i~iwd~~~~~~~~~~-~~~~~~~~~v~~~~~spdg~~la~~~~d-~i~~w~  285 (302)
                      |+..|++|+++|.-   +.+|||+|.|++.+|||++........ .....|.-.|.+..|||+|--|++.+.| .|+||+
T Consensus       321 h~kKI~sv~~NP~~---p~~laT~s~D~T~kIWD~R~l~~K~sp~lst~~HrrsV~sAyFSPs~gtl~TT~~D~~IRv~d  397 (498)
T KOG4328|consen  321 HKKKITSVALNPVC---PWFLATASLDQTAKIWDLRQLRGKASPFLSTLPHRRSVNSAYFSPSGGTLLTTCQDNEIRVFD  397 (498)
T ss_pred             hhcccceeecCCCC---chheeecccCcceeeeehhhhcCCCCcceecccccceeeeeEEcCCCCceEeeccCCceEEee
Confidence            88899999999974   688999999999999999875432111 1124677889999999987668888888 799999


Q ss_pred             ec
Q 022111          286 EA  287 (302)
Q Consensus       286 ~~  287 (302)
                      ..
T Consensus       398 ss  399 (498)
T KOG4328|consen  398 SS  399 (498)
T ss_pred             cc
Confidence            84

>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]

Probab=99.83  E-value=9.8e-19  Score=147.25  Aligned_cols=143  Identities=28%  Similarity=0.505  Sum_probs=115.3

Q ss_pred             ccceeEEEEccCCC-EEEEeeCCCcEEEEeecCCC-------ceEEEEecCcccCeEEEEeeCCCCCCEEEEEeCCCeEE
Q 022111           11 EDTVHDVAMDFYGK-RLATASSDSSIKIIGLSNSA-------SQHLATLKGHRGPVWQVAWAHPKFGSILASCSYDGQVI   82 (302)
Q Consensus        11 ~~~v~~~~~s~~~~-~l~s~~~d~~v~lw~~~~~~-------~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~s~D~~i~   82 (302)
                      ..+|+++.|..+.. .|||||.|..||||.+....       .+....|..|...|+.++|++.  |++||||+.+|.+.
T Consensus        13 ~~pv~s~dfq~n~~~~laT~G~D~~iriW~v~r~~~~~~~~~V~y~s~Ls~H~~aVN~vRf~p~--gelLASg~D~g~v~   90 (434)
T KOG1009|consen   13 HEPVYSVDFQKNSLNKLATAGGDKDIRIWKVNRSEPGGGDMKVEYLSSLSRHTRAVNVVRFSPD--GELLASGGDGGEVF   90 (434)
T ss_pred             CCceEEEEeccCcccceecccCccceeeeeeeecCCCCCceeEEEeecccCCcceeEEEEEcCC--cCeeeecCCCceEE
Confidence            45899999998876 99999999999999884321       1234567889999999999864  89999999999999


Q ss_pred             EEEcC--------C-----CCceeEEEEecCCCCCeeEEEecCCCCCcEEEEEecCCcEEEEEecCCCCeeeeeecccCC
Q 022111           83 IWKEG--------N-----QNDWTQAHTFNDHKSSVNSIAWAPHELGLSLACGSSDGNISVFTATADGGWDTTRIDQAHP  149 (302)
Q Consensus        83 iwd~~--------~-----~~~~~~~~~~~~h~~~i~~l~~~pd~~~~~l~sg~~d~~v~~~~~~~~~~~~~~~~~~~h~  149 (302)
                      +|...        +     ...|.....+.+|...|..++|+|+  +..+++++.|+.+++||+..+.   .......|.
T Consensus        91 lWk~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~d--~~~l~s~s~dns~~l~Dv~~G~---l~~~~~dh~  165 (434)
T KOG1009|consen   91 LWKQGDVRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSPD--SNFLVSGSVDNSVRLWDVHAGQ---LLAILDDHE  165 (434)
T ss_pred             EEEecCcCCccccchhhhCccceEEEEEecccccchhhhhccCC--CceeeeeeccceEEEEEeccce---eEeeccccc
Confidence            99765        1     1225556678889999999999998  6699999999999999998542   222233688


Q ss_pred             CCeEEEEeCCC
Q 022111          150 VGVTSVSWAPA  160 (302)
Q Consensus       150 ~~v~~~~~~~~  160 (302)
                      .-+..++|.|-
T Consensus       166 ~yvqgvawDpl  176 (434)
T KOG1009|consen  166 HYVQGVAWDPL  176 (434)
T ss_pred             cccceeecchh
Confidence            88888999884

>KOG1274 consensus WD40 repeat protein [General function prediction only]

Probab=99.82  E-value=3.3e-18  Score=156.84  Aligned_cols=229  Identities=21%  Similarity=0.341  Sum_probs=169.2

Q ss_pred             cccceeEEEEccCCCEEEEeeCCCcEEEEeecCCCceEEEEecCcccCeEEEEeeCCCCCCEEEEEeCCCeEEEEEcCCC
Q 022111           10 HEDTVHDVAMDFYGKRLATASSDSSIKIIGLSNSASQHLATLKGHRGPVWQVAWAHPKFGSILASCSYDGQVIIWKEGNQ   89 (302)
Q Consensus        10 h~~~v~~~~~s~~~~~l~s~~~d~~v~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~s~D~~i~iwd~~~~   89 (302)
                      |...|.+++.  ++.+|++|+.+++|.+|.+.+....  ..+.--+-++++++|+.+  |+++|.||.|-.|++-+..+.
T Consensus        55 ~g~~v~~ia~--~s~~f~~~s~~~tv~~y~fps~~~~--~iL~Rftlp~r~~~v~g~--g~~iaagsdD~~vK~~~~~D~  128 (933)
T KOG1274|consen   55 SGELVSSIAC--YSNHFLTGSEQNTVLRYKFPSGEED--TILARFTLPIRDLAVSGS--GKMIAAGSDDTAVKLLNLDDS  128 (933)
T ss_pred             cCceeEEEee--cccceEEeeccceEEEeeCCCCCcc--ceeeeeeccceEEEEecC--CcEEEeecCceeEEEEecccc
Confidence            5666776664  4568999999999999998654322  122233557889999864  899999999999999988665


Q ss_pred             CceeEEEEecCCCCCeeEEEecCCCCCcEEEEEecCCcEEEEEecCCCCeeeee-----ecccCCCCeEEEEeCCCCCCC
Q 022111           90 NDWTQAHTFNDHKSSVNSIAWAPHELGLSLACGSSDGNISVFTATADGGWDTTR-----IDQAHPVGVTSVSWAPAMAPG  164 (302)
Q Consensus        90 ~~~~~~~~~~~h~~~i~~l~~~pd~~~~~l~sg~~d~~v~~~~~~~~~~~~~~~-----~~~~h~~~v~~~~~~~~~~~~  164 (302)
                      .   ....+.+|+++|.+|.|+|.  +.+||+.+.||+|++|++..........     ........+..++|+|.+   
T Consensus       129 s---~~~~lrgh~apVl~l~~~p~--~~fLAvss~dG~v~iw~~~~~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~---  200 (933)
T KOG1274|consen  129 S---QEKVLRGHDAPVLQLSYDPK--GNFLAVSSCDGKVQIWDLQDGILSKTLTGVDKDNEFILSRICTRLAWHPKG---  200 (933)
T ss_pred             c---hheeecccCCceeeeeEcCC--CCEEEEEecCceEEEEEcccchhhhhcccCCccccccccceeeeeeecCCC---
Confidence            3   56678899999999999998  6799999999999999987542211110     000113346789999974   


Q ss_pred             ceeecccCCCceeEEEeeCCCcEEEEEEecCccccccccccccCCCceeEEEeeCCCCCCccEEEEEecCCeEEEEEecc
Q 022111          165 ALVGLGLLDPVQKLASCGCDNTVKVWKMYNGIWKMDCFPALQMHSDWVRSVAWAPNLGLPKSTIASASQDGTVVIWTCAK  244 (302)
Q Consensus       165 ~~~~~~~~~~~~~l~s~~~D~~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~l~s~s~D~~i~iwd~~~  244 (302)
                                 ..|+..+.|+.|++|+..+....+..  ....|...+.++.|+|.|    .+||+++.||.|-|||+++
T Consensus       201 -----------g~la~~~~d~~Vkvy~r~~we~~f~L--r~~~~ss~~~~~~wsPnG----~YiAAs~~~g~I~vWnv~t  263 (933)
T KOG1274|consen  201 -----------GTLAVPPVDNTVKVYSRKGWELQFKL--RDKLSSSKFSDLQWSPNG----KYIAASTLDGQILVWNVDT  263 (933)
T ss_pred             -----------CeEEeeccCCeEEEEccCCceeheee--cccccccceEEEEEcCCC----cEEeeeccCCcEEEEeccc
Confidence                       56777778999999998765322221  123345559999999996    7899999999999999985


Q ss_pred             CCcceeeeeeccCCCcEEEEEEccCCCEEEEe
Q 022111          245 EGEQWEGRVLKDFKTPVWSVSWSLTGNLLAVA  276 (302)
Q Consensus       245 ~~~~~~~~~~~~~~~~v~~~~~spdg~~la~~  276 (302)
                      ..       ..++...|.+++|-|+++.|..-
T Consensus       264 ~~-------~~~~~~~Vc~~aw~p~~n~it~~  288 (933)
T KOG1274|consen  264 HE-------RHEFKRAVCCEAWKPNANAITLI  288 (933)
T ss_pred             ch-------hccccceeEEEecCCCCCeeEEE
Confidence            21       14556779999999998776444

>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]

Probab=99.82  E-value=2.1e-18  Score=141.58  Aligned_cols=254  Identities=19%  Similarity=0.264  Sum_probs=178.3

Q ss_pred             cceeEEEEc-------cCCCEEEEeeCCCcEEEEeecCCCceEEEEecCcccCe---EEEEeeCCCCCCEEEEEeCCCeE
Q 022111           12 DTVHDVAMD-------FYGKRLATASSDSSIKIIGLSNSASQHLATLKGHRGPV---WQVAWAHPKFGSILASCSYDGQV   81 (302)
Q Consensus        12 ~~v~~~~~s-------~~~~~l~s~~~d~~v~lw~~~~~~~~~~~~~~~h~~~v---~~v~~~~~~~~~~l~s~s~D~~i   81 (302)
                      ..|++.+|-       |+..++|+.+.|.-|.+||.-.+..+.-.....|...+   .+++|+|+  |.+|+. +..+.|
T Consensus       105 ~tvydy~wYs~M~s~qP~t~l~a~ssr~~PIh~wdaftG~lraSy~~ydh~de~taAhsL~Fs~D--Geqlfa-Gykrci  181 (406)
T KOG2919|consen  105 ETVYDYCWYSRMKSDQPSTNLFAVSSRDQPIHLWDAFTGKLRASYRAYDHQDEYTAAHSLQFSPD--GEQLFA-GYKRCI  181 (406)
T ss_pred             CEEEEEEeeeccccCCCccceeeeccccCceeeeeccccccccchhhhhhHHhhhhheeEEecCC--CCeEee-cccceE
Confidence            356666653       55678999999999999997554444333334565554   47999875  888765 567899


Q ss_pred             EEEEcCCCCceeEEEE-----ecCCCCCeeEEEecCCCCCcEEEEEecCCcEEEEEecCCCCeeeeeecccCCCCeEEEE
Q 022111           82 IIWKEGNQNDWTQAHT-----FNDHKSSVNSIAWAPHELGLSLACGSSDGNISVFTATADGGWDTTRIDQAHPVGVTSVS  156 (302)
Q Consensus        82 ~iwd~~~~~~~~~~~~-----~~~h~~~i~~l~~~pd~~~~~l~sg~~d~~v~~~~~~~~~~~~~~~~~~~h~~~v~~~~  156 (302)
                      +++|+....+..+...     -.+..+-|.+++|+|-. ...+|.|+...++-||.-....+.   .+..+|...|+.+.
T Consensus       182 rvFdt~RpGr~c~vy~t~~~~k~gq~giisc~a~sP~~-~~~~a~gsY~q~~giy~~~~~~pl---~llggh~gGvThL~  257 (406)
T KOG2919|consen  182 RVFDTSRPGRDCPVYTTVTKGKFGQKGIISCFAFSPMD-SKTLAVGSYGQRVGIYNDDGRRPL---QLLGGHGGGVTHLQ  257 (406)
T ss_pred             EEeeccCCCCCCcchhhhhcccccccceeeeeeccCCC-CcceeeecccceeeeEecCCCCce---eeecccCCCeeeEE
Confidence            9999844333222222     22347889999999985 357999999999999865443332   23348999999999


Q ss_pred             eCCCCCCCceeecccCCCceeEEEeeC-CCcEEEEEEecCccccccccccccCCC-ceeEEEeeCCCCCCccEEEEEecC
Q 022111          157 WAPAMAPGALVGLGLLDPVQKLASCGC-DNTVKVWKMYNGIWKMDCFPALQMHSD-WVRSVAWAPNLGLPKSTIASASQD  234 (302)
Q Consensus       157 ~~~~~~~~~~~~~~~~~~~~~l~s~~~-D~~v~iwd~~~~~~~~~~~~~~~~h~~-~v~~v~~~p~~~~~~~~l~s~s~D  234 (302)
                      |.+++              ..|.+|+. |..|-.||++.-.   ..+..+..|.+ .--.|-|.-+.  .++.|++|+.|
T Consensus       258 ~~edG--------------n~lfsGaRk~dkIl~WDiR~~~---~pv~~L~rhv~~TNQRI~FDld~--~~~~LasG~td  318 (406)
T KOG2919|consen  258 WCEDG--------------NKLFSGARKDDKILCWDIRYSR---DPVYALERHVGDTNQRILFDLDP--KGEILASGDTD  318 (406)
T ss_pred             eccCc--------------CeecccccCCCeEEEEeehhcc---chhhhhhhhccCccceEEEecCC--CCceeeccCCC
Confidence            99975              57788765 7789999998643   33455666655 33445554321  24899999999


Q ss_pred             CeEEEEEeccCCcceeeeeeccCCCcEEEEEEccCCCEEEEecCCceEEeeecCCceEE
Q 022111          235 GTVVIWTCAKEGEQWEGRVLKDFKTPVWSVSWSLTGNLLAVADANNVTLWKEAVDGEWQ  293 (302)
Q Consensus       235 ~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~la~~~~d~i~~w~~~~~~~~~  293 (302)
                      |.|++||++.....  ......++..+..++++|--.++|+++...+.-...+++|+.+
T Consensus       319 G~V~vwdlk~~gn~--~sv~~~~sd~vNgvslnP~mpilatssGqr~f~~~~dD~ge~~  375 (406)
T KOG2919|consen  319 GSVRVWDLKDLGNE--VSVTGNYSDTVNGVSLNPIMPILATSSGQRIFKYPKDDNGELE  375 (406)
T ss_pred             ccEEEEecCCCCCc--ccccccccccccceecCcccceeeeccCceeecCCCccccccc
Confidence            99999999874431  2334566778999999999888888877666555555566554

>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]

Probab=99.82  E-value=1.7e-18  Score=141.15  Aligned_cols=207  Identities=18%  Similarity=0.314  Sum_probs=150.1

Q ss_pred             cccCeEEEEeeCCCCCCEEEEEeCCCeEEEEEcCCCCceeEEEEecCCCCCeeEEEecCCCCCcEEEEEecCCcEEEEEe
Q 022111           54 HRGPVWQVAWAHPKFGSILASCSYDGQVIIWKEGNQNDWTQAHTFNDHKSSVNSIAWAPHELGLSLACGSSDGNISVFTA  133 (302)
Q Consensus        54 h~~~v~~v~~~~~~~~~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~h~~~i~~l~~~pd~~~~~l~sg~~d~~v~~~~~  133 (302)
                      .+..|.+|.|++ . +..|+.+++||++++||.....   ....++ |..++.+++|.++   ..+++|+.|+.|+.+|+
T Consensus        12 P~d~IS~v~f~~-~-~~~LLvssWDgslrlYdv~~~~---l~~~~~-~~~plL~c~F~d~---~~~~~G~~dg~vr~~Dl   82 (323)
T KOG1036|consen   12 PEDGISSVKFSP-S-SSDLLVSSWDGSLRLYDVPANS---LKLKFK-HGAPLLDCAFADE---STIVTGGLDGQVRRYDL   82 (323)
T ss_pred             ChhceeeEEEcC-c-CCcEEEEeccCcEEEEeccchh---hhhhee-cCCceeeeeccCC---ceEEEeccCceEEEEEe
Confidence            356799999984 3 3455566799999999986641   233343 8999999999874   37999999999999999


Q ss_pred             cCCCCeeeeeecccCCCCeEEEEeCCCCCCCceeecccCCCceeEEEeeCCCcEEEEEEecCccccccccccccCCCcee
Q 022111          134 TADGGWDTTRIDQAHPVGVTSVSWAPAMAPGALVGLGLLDPVQKLASCGCDNTVKVWKMYNGIWKMDCFPALQMHSDWVR  213 (302)
Q Consensus       134 ~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~D~~v~iwd~~~~~~~~~~~~~~~~h~~~v~  213 (302)
                      ..+..   ..+ ..|..+++++.+++..              ..+++||.|++|++||.+...    ...++.. ...|.
T Consensus        83 n~~~~---~~i-gth~~~i~ci~~~~~~--------------~~vIsgsWD~~ik~wD~R~~~----~~~~~d~-~kkVy  139 (323)
T KOG1036|consen   83 NTGNE---DQI-GTHDEGIRCIEYSYEV--------------GCVISGSWDKTIKFWDPRNKV----VVGTFDQ-GKKVY  139 (323)
T ss_pred             cCCcc---eee-ccCCCceEEEEeeccC--------------CeEEEcccCccEEEEeccccc----ccccccc-CceEE
Confidence            86543   222 3788999999998743              689999999999999998632    1222222 23688


Q ss_pred             EEEeeCCCCCCccEEEEEecCCeEEEEEeccCCccee----------------------------eeee-----------
Q 022111          214 SVAWAPNLGLPKSTIASASQDGTVVIWTCAKEGEQWE----------------------------GRVL-----------  254 (302)
Q Consensus       214 ~v~~~p~~~~~~~~l~s~s~D~~i~iwd~~~~~~~~~----------------------------~~~~-----------  254 (302)
                      |++.+      ++.|+.|..|+.+.+||++......+                            +++.           
T Consensus       140 ~~~v~------g~~LvVg~~~r~v~iyDLRn~~~~~q~reS~lkyqtR~v~~~pn~eGy~~sSieGRVavE~~d~s~~~~  213 (323)
T KOG1036|consen  140 CMDVS------GNRLVVGTSDRKVLIYDLRNLDEPFQRRESSLKYQTRCVALVPNGEGYVVSSIEGRVAVEYFDDSEEAQ  213 (323)
T ss_pred             EEecc------CCEEEEeecCceEEEEEcccccchhhhccccceeEEEEEEEecCCCceEEEeecceEEEEccCCchHHh
Confidence            88765      46799999999999999987432210                            0000           


Q ss_pred             ------ccCC---------CcEEEEEEccCCCEEEEecCC-ceEEeeecCCceEEEeeec
Q 022111          255 ------KDFK---------TPVWSVSWSLTGNLLAVADAN-NVTLWKEAVDGEWQQVSVV  298 (302)
Q Consensus       255 ------~~~~---------~~v~~~~~spdg~~la~~~~d-~i~~w~~~~~~~~~~~~~~  298 (302)
                            +.|.         -||.+++|+|--..||+|++| -|.+||...-+++.++...
T Consensus       214 skkyaFkCHr~~~~~~~~~yPVNai~Fhp~~~tfaTgGsDG~V~~Wd~~~rKrl~q~~~~  273 (323)
T KOG1036|consen  214 SKKYAFKCHRLSEKDTEIIYPVNAIAFHPIHGTFATGGSDGIVNIWDLFNRKRLKQLAKY  273 (323)
T ss_pred             hhceeEEeeecccCCceEEEEeceeEeccccceEEecCCCceEEEccCcchhhhhhccCC
Confidence                  0010         268899999987789999999 5999998655566555544

>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]

Probab=99.82  E-value=4.1e-18  Score=154.77  Aligned_cols=254  Identities=22%  Similarity=0.285  Sum_probs=174.9

Q ss_pred             ccceeEEEEccC-CCEEEEeeCCCcEEEEeecCCCce---EE-EEecCcccCeEEEEeeCCCCCCEEEEEeCCCeEEEEE
Q 022111           11 EDTVHDVAMDFY-GKRLATASSDSSIKIIGLSNSASQ---HL-ATLKGHRGPVWQVAWAHPKFGSILASCSYDGQVIIWK   85 (302)
Q Consensus        11 ~~~v~~~~~s~~-~~~l~s~~~d~~v~lw~~~~~~~~---~~-~~~~~h~~~v~~v~~~~~~~~~~l~s~s~D~~i~iwd   85 (302)
                      ...|++++|+|. ...+|.|.++|+|-+||+......   .+ .....|..+|+.+.|.....+.-++++|.||.|+.|+
T Consensus       242 ~s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~s~ls~~~~sh~~~v~~vvW~~~~~~~~f~s~ssDG~i~~W~  321 (555)
T KOG1587|consen  242 PSEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTPPSGLSALEVSHSEPVTAVVWLQNEHNTEFFSLSSDGSICSWD  321 (555)
T ss_pred             CCceeEEEeccCCcceEEeeccCceEEEEEccCCCCCCCcccccccccCCcCeEEEEEeccCCCCceEEEecCCcEeeee
Confidence            467999999875 578888889999999999654332   11 1234589999999997654445689999999999998


Q ss_pred             cCCCCc---eeEEEEec------CCCCCeeEEEecCCCCCcEEEEEecCCcEEEEEecCCCCeee------eeecccCCC
Q 022111           86 EGNQND---WTQAHTFN------DHKSSVNSIAWAPHELGLSLACGSSDGNISVFTATADGGWDT------TRIDQAHPV  150 (302)
Q Consensus        86 ~~~~~~---~~~~~~~~------~h~~~i~~l~~~pd~~~~~l~sg~~d~~v~~~~~~~~~~~~~------~~~~~~h~~  150 (302)
                      ++.-..   ..+.....      .-...++++.|.|.. ...++.|+.+|.|.--... +.....      ......|..
T Consensus       322 ~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~-p~~FiVGTe~G~v~~~~r~-g~~~~~~~~~~~~~~~~~h~g  399 (555)
T KOG1587|consen  322 TDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTD-PNHFIVGTEEGKVYKGCRK-GYTPAPEVSYKGHSTFITHIG  399 (555)
T ss_pred             ccccccchhhcccccccccccccccccceeeEeeccCC-CceEEEEcCCcEEEEEecc-CCcccccccccccccccccCc
Confidence            754221   00111111      123467899998764 3579999999988652211 111111      111235778


Q ss_pred             CeEEEEeCCCCCCCceeecccCCCceeEEEeeCCCcEEEEEEecCccccccccccccCCCceeEEEeeCCCCCCccEEEE
Q 022111          151 GVTSVSWAPAMAPGALVGLGLLDPVQKLASCGCDNTVKVWKMYNGIWKMDCFPALQMHSDWVRSVAWAPNLGLPKSTIAS  230 (302)
Q Consensus       151 ~v~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~D~~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~l~s  230 (302)
                      +|.++.++|...             ++|.|++ |-+++||......   ..+..+..+...|++++|||..   +..|++
T Consensus       400 ~v~~v~~nPF~~-------------k~fls~g-DW~vriWs~~~~~---~Pl~~~~~~~~~v~~vaWSptr---pavF~~  459 (555)
T KOG1587|consen  400 PVYAVSRNPFYP-------------KNFLSVG-DWTVRIWSEDVIA---SPLLSLDSSPDYVTDVAWSPTR---PAVFAT  459 (555)
T ss_pred             ceEeeecCCCcc-------------ceeeeec-cceeEeccccCCC---CcchhhhhccceeeeeEEcCcC---ceEEEE
Confidence            899999999752             5666776 9999999976221   2233455677889999999974   689999


Q ss_pred             EecCCeEEEEEeccCCcceeeeeeccCCCcEEEEEEccCCCEEEEecCC-ceEEeeec
Q 022111          231 ASQDGTVVIWTCAKEGEQWEGRVLKDFKTPVWSVSWSLTGNLLAVADAN-NVTLWKEA  287 (302)
Q Consensus       231 ~s~D~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~la~~~~d-~i~~w~~~  287 (302)
                      +..||.|.|||+......-......+ ......+.|+++|+.|++|+.. ++++|+..
T Consensus       460 ~d~~G~l~iWDLl~~~~~Pv~s~~~~-~~~l~~~~~s~~g~~lavGd~~G~~~~~~l~  516 (555)
T KOG1587|consen  460 VDGDGNLDIWDLLQDDEEPVLSQKVC-SPALTRVRWSPNGKLLAVGDANGTTHILKLS  516 (555)
T ss_pred             EcCCCceehhhhhccccCCccccccc-ccccceeecCCCCcEEEEecCCCcEEEEEcC
Confidence            99999999999975432111111112 3345678899999999999888 69999974

>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]

Probab=99.82  E-value=8.4e-18  Score=149.65  Aligned_cols=239  Identities=22%  Similarity=0.320  Sum_probs=166.9

Q ss_pred             ceeEEEEccCCCEEEEeeCCCcEEEEeecCCCceEEEEecCcccCeEEEEeeCCCCCCEEEEEeCCCeEEEEEcCCCCce
Q 022111           13 TVHDVAMDFYGKRLATASSDSSIKIIGLSNSASQHLATLKGHRGPVWQVAWAHPKFGSILASCSYDGQVIIWKEGNQNDW   92 (302)
Q Consensus        13 ~v~~~~~s~~~~~l~s~~~d~~v~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~s~D~~i~iwd~~~~~~~   92 (302)
                      -|+.++|.|||..|+.+. +..+.+||...+  ..+.++++|++.|++++|+++  |+++|||+.|+.+.+|...-..  
T Consensus        14 ci~d~afkPDGsqL~lAA-g~rlliyD~ndG--~llqtLKgHKDtVycVAys~d--GkrFASG~aDK~VI~W~~klEG--   86 (1081)
T KOG1538|consen   14 CINDIAFKPDGTQLILAA-GSRLLVYDTSDG--TLLQPLKGHKDTVYCVAYAKD--GKRFASGSADKSVIIWTSKLEG--   86 (1081)
T ss_pred             chheeEECCCCceEEEec-CCEEEEEeCCCc--ccccccccccceEEEEEEccC--CceeccCCCceeEEEecccccc--
Confidence            789999999998887654 567899998653  467889999999999999864  9999999999999999753211  


Q ss_pred             eEEEEecCCCC---------------------------------------CeeEEEecCCCCCcEEEEEecCCcEEEEEe
Q 022111           93 TQAHTFNDHKS---------------------------------------SVNSIAWAPHELGLSLACGSSDGNISVFTA  133 (302)
Q Consensus        93 ~~~~~~~~h~~---------------------------------------~i~~l~~~pd~~~~~l~sg~~d~~v~~~~~  133 (302)
                        +-.+ .|++                                       ++.+++|..|  |++++-|-.+|+|.+-.-
T Consensus        87 --~LkY-SH~D~IQCMsFNP~~h~LasCsLsdFglWS~~qK~V~K~kss~R~~~CsWtnD--GqylalG~~nGTIsiRNk  161 (1081)
T KOG1538|consen   87 --ILKY-SHNDAIQCMSFNPITHQLASCSLSDFGLWSPEQKSVSKHKSSSRIICCSWTND--GQYLALGMFNGTISIRNK  161 (1081)
T ss_pred             --eeee-ccCCeeeEeecCchHHHhhhcchhhccccChhhhhHHhhhhheeEEEeeecCC--CcEEEEeccCceEEeecC
Confidence              0111 1333                                       4455555555  778888888888888532


Q ss_pred             cCCCCeeeeeecccCCCCeEEEEeCCCCCCCceeecccCCCceeEEEeeCCCcEEEEEEecCccccccccccccCCCcee
Q 022111          134 TADGGWDTTRIDQAHPVGVTSVSWAPAMAPGALVGLGLLDPVQKLASCGCDNTVKVWKMYNGIWKMDCFPALQMHSDWVR  213 (302)
Q Consensus       134 ~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~D~~v~iwd~~~~~~~~~~~~~~~~h~~~v~  213 (302)
                      .......+.+ ..+...+|.+++|+|+..++.         ...++..--..++.++.+....-  ..-+.+   .-.-.
T Consensus       162 ~gEek~~I~R-pgg~Nspiwsi~~~p~sg~G~---------~di~aV~DW~qTLSFy~LsG~~I--gk~r~L---~FdP~  226 (1081)
T KOG1538|consen  162 NGEEKVKIER-PGGSNSPIWSICWNPSSGEGR---------NDILAVADWGQTLSFYQLSGKQI--GKDRAL---NFDPC  226 (1081)
T ss_pred             CCCcceEEeC-CCCCCCCceEEEecCCCCCCc---------cceEEEEeccceeEEEEecceee--cccccC---CCCch
Confidence            2111111111 224567899999999865543         24677777778888888764210  000111   11135


Q ss_pred             EEEeeCCCCCCccEEEEEecCCeEEEEEeccCCcceeeeeeccCCCcEEEEEEccCCCEEEEecCC-ceEEeee
Q 022111          214 SVAWAPNLGLPKSTIASASQDGTVVIWTCAKEGEQWEGRVLKDFKTPVWSVSWSLTGNLLAVADAN-NVTLWKE  286 (302)
Q Consensus       214 ~v~~~p~~~~~~~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~la~~~~d-~i~~w~~  286 (302)
                      |+++.|+|    .+++.|+.|+.+++|..+.   ...+ .+.++..+||+++..|++..+++|..| +|--|..
T Consensus       227 CisYf~NG----Ey~LiGGsdk~L~~fTR~G---vrLG-Tvg~~D~WIWtV~~~PNsQ~v~~GCqDGTiACyNl  292 (1081)
T KOG1538|consen  227 CISYFTNG----EYILLGGSDKQLSLFTRDG---VRLG-TVGEQDSWIWTVQAKPNSQYVVVGCQDGTIACYNL  292 (1081)
T ss_pred             hheeccCC----cEEEEccCCCceEEEeecC---eEEe-eccccceeEEEEEEccCCceEEEEEccCeeehhhh
Confidence            89999986    7899999999999996542   2222 235677899999999999999999998 5655543

>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]

Probab=99.82  E-value=1.9e-17  Score=143.00  Aligned_cols=253  Identities=17%  Similarity=0.286  Sum_probs=169.2

Q ss_pred             ccceeEEEEccCC-CEEEEeeCCCcEEEEeecCCCc-eEEEEecCcc-cCeEEEEeeCCCCCCEEEEEeCCCeEEEEEcC
Q 022111           11 EDTVHDVAMDFYG-KRLATASSDSSIKIIGLSNSAS-QHLATLKGHR-GPVWQVAWAHPKFGSILASCSYDGQVIIWKEG   87 (302)
Q Consensus        11 ~~~v~~~~~s~~~-~~l~s~~~d~~v~lw~~~~~~~-~~~~~~~~h~-~~v~~v~~~~~~~~~~l~s~s~D~~i~iwd~~   87 (302)
                      .+.|..+.|+|.. ..++++| -+-+.-|++..... +....+..++ ..|.+++|.++  |+ ++||..+|.|.||+..
T Consensus       200 ne~v~~a~FHPtd~nliit~G-k~H~~Fw~~~~~~l~k~~~~fek~ekk~Vl~v~F~en--gd-viTgDS~G~i~Iw~~~  275 (626)
T KOG2106|consen  200 NEVVFLATFHPTDPNLIITCG-KGHLYFWTLRGGSLVKRQGIFEKREKKFVLCVTFLEN--GD-VITGDSGGNILIWSKG  275 (626)
T ss_pred             cceEEEEEeccCCCcEEEEeC-CceEEEEEccCCceEEEeeccccccceEEEEEEEcCC--CC-EEeecCCceEEEEeCC
Confidence            3467778899966 5666666 45688998865442 2233444443 55899999753  44 6799999999999975


Q ss_pred             CCCceeEEEEecCCCCCeeEEEecCCCCCcEEEEEecCCcEEEEEecCCCCeeeeeecccCCCCeEEEEeCC--------
Q 022111           88 NQNDWTQAHTFNDHKSSVNSIAWAPHELGLSLACGSSDGNISVFTATADGGWDTTRIDQAHPVGVTSVSWAP--------  159 (302)
Q Consensus        88 ~~~~~~~~~~~~~h~~~i~~l~~~pd~~~~~l~sg~~d~~v~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~--------  159 (302)
                      ...   ..++...|++-|.++..-.+  |. |++|+.|+.|..||-.-. .....++. .....++.++=..        
T Consensus       276 ~~~---~~k~~~aH~ggv~~L~~lr~--Gt-llSGgKDRki~~Wd~~y~-k~r~~elP-e~~G~iRtv~e~~~di~vGTt  347 (626)
T KOG2106|consen  276 TNR---ISKQVHAHDGGVFSLCMLRD--GT-LLSGGKDRKIILWDDNYR-KLRETELP-EQFGPIRTVAEGKGDILVGTT  347 (626)
T ss_pred             Cce---EEeEeeecCCceEEEEEecC--cc-EeecCccceEEecccccc-ccccccCc-hhcCCeeEEecCCCcEEEeec
Confidence            532   22233379999999998776  65 666999999999983211 11111111 0111222221000        


Q ss_pred             -----------------CCCCCceeecccCCCceeEEEeeCCCcEEEEEEecCccccccccccccCCCceeEEEeeCCCC
Q 022111          160 -----------------AMAPGALVGLGLLDPVQKLASCGCDNTVKVWKMYNGIWKMDCFPALQMHSDWVRSVAWAPNLG  222 (302)
Q Consensus       160 -----------------~~~~~~~~~~~~~~~~~~l~s~~~D~~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~  222 (302)
                                       .++...++++...+...+++||+.|+.++||+-....|..       .-.+++.|++|+|.+ 
T Consensus       348 rN~iL~Gt~~~~f~~~v~gh~delwgla~hps~~q~~T~gqdk~v~lW~~~k~~wt~-------~~~d~~~~~~fhpsg-  419 (626)
T KOG2106|consen  348 RNFILQGTLENGFTLTVQGHGDELWGLATHPSKNQLLTCGQDKHVRLWNDHKLEWTK-------IIEDPAECADFHPSG-  419 (626)
T ss_pred             cceEEEeeecCCceEEEEecccceeeEEcCCChhheeeccCcceEEEccCCceeEEE-------EecCceeEeeccCcc-
Confidence                             0011122333344456789999999999999933322321       135668999999983 


Q ss_pred             CCccEEEEEecCCeEEEEEeccCCcceeeeeeccCCCcEEEEEEccCCCEEEEecCC-ceEEeeecCCce
Q 022111          223 LPKSTIASASQDGTVVIWTCAKEGEQWEGRVLKDFKTPVWSVSWSLTGNLLAVADAN-NVTLWKEAVDGE  291 (302)
Q Consensus       223 ~~~~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~la~~~~d-~i~~w~~~~~~~  291 (302)
                          .+|.|+..|...+.|+....   ...+..+ .+++..++|||+|.+||+|++| .|+||....+|+
T Consensus       420 ----~va~Gt~~G~w~V~d~e~~~---lv~~~~d-~~~ls~v~ysp~G~~lAvgs~d~~iyiy~Vs~~g~  481 (626)
T KOG2106|consen  420 ----VVAVGTATGRWFVLDTETQD---LVTIHTD-NEQLSVVRYSPDGAFLAVGSHDNHIYIYRVSANGR  481 (626)
T ss_pred             ----eEEEeeccceEEEEecccce---eEEEEec-CCceEEEEEcCCCCEEEEecCCCeEEEEEECCCCc
Confidence                79999999999998886521   2233345 7899999999999999999999 699999988887

>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]

Probab=99.82  E-value=1.1e-17  Score=147.17  Aligned_cols=262  Identities=20%  Similarity=0.301  Sum_probs=177.6

Q ss_pred             cccccccceeEEEEccCCCEEEEeeCCCcEEEEeecCCCceEEEEecCcccCeEEEEeeCCCCCCEEEEEeCCCeEEEEE
Q 022111            6 IETGHEDTVHDVAMDFYGKRLATASSDSSIKIIGLSNSASQHLATLKGHRGPVWQVAWAHPKFGSILASCSYDGQVIIWK   85 (302)
Q Consensus         6 ~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~s~D~~i~iwd   85 (302)
                      ++.||++.|.+|+.+|.|.+||+|+.||+||||.+.+  +.++.++. -.+.|.+|+|+|..+-.+||.+-.+ .+.|-+
T Consensus       395 vyrGHtg~Vr~iSvdp~G~wlasGsdDGtvriWEi~T--gRcvr~~~-~d~~I~~vaw~P~~~~~vLAvA~~~-~~~ivn  470 (733)
T KOG0650|consen  395 VYRGHTGLVRSISVDPSGEWLASGSDDGTVRIWEIAT--GRCVRTVQ-FDSEIRSVAWNPLSDLCVLAVAVGE-CVLIVN  470 (733)
T ss_pred             eEeccCCeEEEEEecCCcceeeecCCCCcEEEEEeec--ceEEEEEe-ecceeEEEEecCCCCceeEEEEecC-ceEEeC
Confidence            4679999999999999999999999999999999976  45565543 2347999999875433345444333 344443


Q ss_pred             cCCCC-------------------------cee---------EE-EEecCCCCCeeEEEecCCCCCcEEEEEecC---Cc
Q 022111           86 EGNQN-------------------------DWT---------QA-HTFNDHKSSVNSIAWAPHELGLSLACGSSD---GN  127 (302)
Q Consensus        86 ~~~~~-------------------------~~~---------~~-~~~~~h~~~i~~l~~~pd~~~~~l~sg~~d---~~  127 (302)
                      ..-+.                         .|.         .+ .++ -|...|+.+.|+..  |.+|++...+   ..
T Consensus       471 p~~G~~~e~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I-~~~k~i~~vtWHrk--GDYlatV~~~~~~~~  547 (733)
T KOG0650|consen  471 PIFGDRLEVGPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVI-KHPKSIRQVTWHRK--GDYLATVMPDSGNKS  547 (733)
T ss_pred             ccccchhhhcchhhhhhcCCCccCCcccceeechhhhhhhccceEEEE-ecCCccceeeeecC--CceEEEeccCCCcce
Confidence            21100                         010         00 122 27789999999976  7788887654   57


Q ss_pred             EEEEEecCCCCeeeeeecccCCCCeEEEEeCCCCCC-------------------------Cc--eeecccCCCceeEEE
Q 022111          128 ISVFTATADGGWDTTRIDQAHPVGVTSVSWAPAMAP-------------------------GA--LVGLGLLDPVQKLAS  180 (302)
Q Consensus       128 v~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~-------------------------~~--~~~~~~~~~~~~l~s  180 (302)
                      |.|+++.......  .+. .....+.++.|.|....                         +.  +-.+...+.|..|+.
T Consensus       548 VliHQLSK~~sQ~--PF~-kskG~vq~v~FHPs~p~lfVaTq~~vRiYdL~kqelvKkL~tg~kwiS~msihp~GDnli~  624 (733)
T KOG0650|consen  548 VLIHQLSKRKSQS--PFR-KSKGLVQRVKFHPSKPYLFVATQRSVRIYDLSKQELVKKLLTGSKWISSMSIHPNGDNLIL  624 (733)
T ss_pred             EEEEecccccccC--chh-hcCCceeEEEecCCCceEEEEeccceEEEehhHHHHHHHHhcCCeeeeeeeecCCCCeEEE
Confidence            8888886543222  221 11234667777775421                         00  001223356889999


Q ss_pred             eeCCCcEEEEEEecCccccccccccccCCCceeEEEeeCCCCCCccEEEEEecCCeEEEEEeccCCcc------eeeeee
Q 022111          181 CGCDNTVKVWKMYNGIWKMDCFPALQMHSDWVRSVAWAPNLGLPKSTIASASQDGTVVIWTCAKEGEQ------WEGRVL  254 (302)
Q Consensus       181 ~~~D~~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~l~s~s~D~~i~iwd~~~~~~~------~~~~~~  254 (302)
                      ++.|+.+..+|+.-..   +.++++.-|...|++|+|++..    ..+++|+.|+++.||.-.--...      -....+
T Consensus       625 gs~d~k~~WfDldlss---kPyk~lr~H~~avr~Va~H~ry----PLfas~sdDgtv~Vfhg~VY~Dl~qnpliVPlK~L  697 (733)
T KOG0650|consen  625 GSYDKKMCWFDLDLSS---KPYKTLRLHEKAVRSVAFHKRY----PLFASGSDDGTVIVFHGMVYNDLLQNPLIVPLKRL  697 (733)
T ss_pred             ecCCCeeEEEEcccCc---chhHHhhhhhhhhhhhhhcccc----ceeeeecCCCcEEEEeeeeehhhhcCCceEeeeec
Confidence            9999999999986442   3456778899999999999975    67999999999999964321111      111233


Q ss_pred             ccCCC----cEEEEEEccCCCEEEEecCC-ceEEe
Q 022111          255 KDFKT----PVWSVSWSLTGNLLAVADAN-NVTLW  284 (302)
Q Consensus       255 ~~~~~----~v~~~~~spdg~~la~~~~d-~i~~w  284 (302)
                      .+|..    .|..+.|+|..-.|-+|+.| .|++|
T Consensus       698 ~gH~~~~~~gVLd~~wHP~qpWLfsAGAd~tirlf  732 (733)
T KOG0650|consen  698 RGHEKTNDLGVLDTIWHPRQPWLFSAGADGTIRLF  732 (733)
T ss_pred             cCceeecccceEeecccCCCceEEecCCCceEEee
Confidence            45543    38888999999999888888 79998

>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]

Probab=99.82  E-value=7.8e-19  Score=151.31  Aligned_cols=220  Identities=18%  Similarity=0.242  Sum_probs=169.9

Q ss_pred             EEEccCCCEEEEeeCCCcEEEEeecCCCceEEEEecCcccCeEEEEeeCCCCCCEEEEEeCCCeEEEEEcCCCCceeEEE
Q 022111           17 VAMDFYGKRLATASSDSSIKIIGLSNSASQHLATLKGHRGPVWQVAWAHPKFGSILASCSYDGQVIIWKEGNQNDWTQAH   96 (302)
Q Consensus        17 ~~~s~~~~~l~s~~~d~~v~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~s~D~~i~iwd~~~~~~~~~~~   96 (302)
                      ++......++++||..+.|+|||+..  ..+...+++|...|+++.|+..  ..+||+++..|-|.|-...++...   .
T Consensus        85 v~~~s~S~y~~sgG~~~~Vkiwdl~~--kl~hr~lkdh~stvt~v~YN~~--DeyiAsvs~gGdiiih~~~t~~~t---t  157 (673)
T KOG4378|consen   85 VACASQSLYEISGGQSGCVKIWDLRA--KLIHRFLKDHQSTVTYVDYNNT--DEYIASVSDGGDIIIHGTKTKQKT---T  157 (673)
T ss_pred             HhhhhcceeeeccCcCceeeehhhHH--HHHhhhccCCcceeEEEEecCC--cceeEEeccCCcEEEEecccCccc---c
Confidence            33334458999999999999999974  2356778999999999999754  579999999999999988765432   2


Q ss_pred             EecCC-CCCeeEEEecCCCCCcEEEEEecCCcEEEEEecCCCCeeeeeecccCCCCeEEEEeCCCCCCCceeecccCCCc
Q 022111           97 TFNDH-KSSVNSIAWAPHELGLSLACGSSDGNISVFTATADGGWDTTRIDQAHPVGVTSVSWAPAMAPGALVGLGLLDPV  175 (302)
Q Consensus        97 ~~~~h-~~~i~~l~~~pd~~~~~l~sg~~d~~v~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~  175 (302)
                      +|... ...|+-+.|+|... .+|.+++++|.|.+||+....  ........|..+...++|+|..             .
T Consensus       158 ~f~~~sgqsvRll~ys~skr-~lL~~asd~G~VtlwDv~g~s--p~~~~~~~HsAP~~gicfspsn-------------e  221 (673)
T KOG4378|consen  158 TFTIDSGQSVRLLRYSPSKR-FLLSIASDKGAVTLWDVQGMS--PIFHASEAHSAPCRGICFSPSN-------------E  221 (673)
T ss_pred             ceecCCCCeEEEeecccccc-eeeEeeccCCeEEEEeccCCC--cccchhhhccCCcCcceecCCc-------------c
Confidence            34433 45667899998743 478999999999999986443  3344455899999999999964             4


Q ss_pred             eeEEEeeCCCcEEEEEEecCccccccccccccCCCceeEEEeeCCCCCCccEEEEEecCCeEEEEEeccCCcceeeeeec
Q 022111          176 QKLASCGCDNTVKVWKMYNGIWKMDCFPALQMHSDWVRSVAWAPNLGLPKSTIASASQDGTVVIWTCAKEGEQWEGRVLK  255 (302)
Q Consensus       176 ~~l~s~~~D~~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~  255 (302)
                      .+|++.|.|+.|.+||...... .+++    .-..+...|+|+|+|    .+|+.|+..|.|..||++..+.+  ..+..
T Consensus       222 ~l~vsVG~Dkki~~yD~~s~~s-~~~l----~y~~Plstvaf~~~G----~~L~aG~s~G~~i~YD~R~~k~P--v~v~s  290 (673)
T KOG4378|consen  222 ALLVSVGYDKKINIYDIRSQAS-TDRL----TYSHPLSTVAFSECG----TYLCAGNSKGELIAYDMRSTKAP--VAVRS  290 (673)
T ss_pred             ceEEEecccceEEEeecccccc-ccee----eecCCcceeeecCCc----eEEEeecCCceEEEEecccCCCC--ceEee
Confidence            7899999999999999975421 1221    124557899999995    88999999999999999987654  34456


Q ss_pred             cCCCcEEEEEEccCC
Q 022111          256 DFKTPVWSVSWSLTG  270 (302)
Q Consensus       256 ~~~~~v~~~~~spdg  270 (302)
                      .|...|.+++|-|.-
T Consensus       291 ah~~sVt~vafq~s~  305 (673)
T KOG4378|consen  291 AHDASVTRVAFQPSP  305 (673)
T ss_pred             ecccceeEEEeeecc
Confidence            777889999997754

>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]

Probab=99.81  E-value=1.1e-18  Score=151.81  Aligned_cols=217  Identities=22%  Similarity=0.322  Sum_probs=157.4

Q ss_pred             CCEEEEeeCCCcEEEEeecCCCceEEEEecCcccCeEEEEeeCCCCCCEEEEEeCCCeEEEEEcCCCCceeEEEEecCCC
Q 022111           23 GKRLATASSDSSIKIIGLSNSASQHLATLKGHRGPVWQVAWAHPKFGSILASCSYDGQVIIWKEGNQNDWTQAHTFNDHK  102 (302)
Q Consensus        23 ~~~l~s~~~d~~v~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~h~  102 (302)
                      +..|+.++.||.+.|.+-.   ++.-.+..+|.+.|.+-+|+++  |.-|+|+++||.|++|.-...    ...++....
T Consensus        75 ~d~~~i~s~DGkf~il~k~---~rVE~sv~AH~~A~~~gRW~~d--GtgLlt~GEDG~iKiWSrsGM----LRStl~Q~~  145 (737)
T KOG1524|consen   75 SDTLLICSNDGRFVILNKS---ARVERSISAHAAAISSGRWSPD--GAGLLTAGEDGVIKIWSRSGM----LRSTVVQNE  145 (737)
T ss_pred             cceEEEEcCCceEEEeccc---chhhhhhhhhhhhhhhcccCCC--CceeeeecCCceEEEEeccch----HHHHHhhcC
Confidence            3678888999999987643   3344567899999999999874  888999999999999974332    223444467


Q ss_pred             CCeeEEEecCCCCCcEEEEEecCCcEEEEEecCCCCeeeeeecccCCCCeEEEEeCCCCCCCceeecccCCCceeEEEee
Q 022111          103 SSVNSIAWAPHELGLSLACGSSDGNISVFTATADGGWDTTRIDQAHPVGVTSVSWAPAMAPGALVGLGLLDPVQKLASCG  182 (302)
Q Consensus       103 ~~i~~l~~~pd~~~~~l~sg~~d~~v~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~  182 (302)
                      .+|+|++|.|+.+ ..+.+.  .+++.+=.+....  .+.+.+ +|..-|.++.|+|..              ..++|||
T Consensus       146 ~~v~c~~W~p~S~-~vl~c~--g~h~~IKpL~~n~--k~i~Wk-AHDGiiL~~~W~~~s--------------~lI~sgG  205 (737)
T KOG1524|consen  146 ESIRCARWAPNSN-SIVFCQ--GGHISIKPLAANS--KIIRWR-AHDGLVLSLSWSTQS--------------NIIASGG  205 (737)
T ss_pred             ceeEEEEECCCCC-ceEEec--CCeEEEeeccccc--ceeEEe-ccCcEEEEeecCccc--------------cceeecC
Confidence            8999999999853 344443  3566664433221  223333 888999999999863              7899999


Q ss_pred             CCCcEEEEEEecCccccccccccccCCCceeEEEeeCCCCCCccEEEEEecCCeEEEEEeccCCcceeeeeeccCCCcEE
Q 022111          183 CDNTVKVWKMYNGIWKMDCFPALQMHSDWVRSVAWAPNLGLPKSTIASASQDGTVVIWTCAKEGEQWEGRVLKDFKTPVW  262 (302)
Q Consensus       183 ~D~~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~~~~~v~  262 (302)
                      +|-..+|||....     .+..-..|+.+|++++|+|+.     .++.+|.. ++|+              .+...+.|.
T Consensus       206 ED~kfKvWD~~G~-----~Lf~S~~~ey~ITSva~npd~-----~~~v~S~n-t~R~--------------~~p~~GSif  260 (737)
T KOG1524|consen  206 EDFRFKIWDAQGA-----NLFTSAAEEYAITSVAFNPEK-----DYLLWSYN-TARF--------------SSPRVGSIF  260 (737)
T ss_pred             CceeEEeecccCc-----ccccCChhccceeeeeecccc-----ceeeeeee-eeee--------------cCCCccceE
Confidence            9999999998653     344556799999999999983     45555543 3331              122345699


Q ss_pred             EEEEccCCCEEEEecCCceEEeeecCCceEE
Q 022111          263 SVSWSLTGNLLAVADANNVTLWKEAVDGEWQ  293 (302)
Q Consensus       263 ~~~~spdg~~la~~~~d~i~~w~~~~~~~~~  293 (302)
                      .++|||||.++++|.+.+..+.-...+.+|+
T Consensus       261 nlsWS~DGTQ~a~gt~~G~v~~A~~ieq~l~  291 (737)
T KOG1524|consen  261 NLSWSADGTQATCGTSTGQLIVAYAIEQQLV  291 (737)
T ss_pred             EEEEcCCCceeeccccCceEEEeeeehhhhh
Confidence            9999999999999988877776665555543

>KOG0646 consensus WD40 repeat protein [General function prediction only]

Probab=99.81  E-value=3.4e-18  Score=146.26  Aligned_cols=209  Identities=17%  Similarity=0.201  Sum_probs=154.2

Q ss_pred             ccccccceeEEEEccCCCEEEEeeCCCcEEEEeec-------CCCceEEEEecCcccCeEEEEeeCCCCCCEEEEEeCCC
Q 022111            7 ETGHEDTVHDVAMDFYGKRLATASSDSSIKIIGLS-------NSASQHLATLKGHRGPVWQVAWAHPKFGSILASCSYDG   79 (302)
Q Consensus         7 ~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~lw~~~-------~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~s~D~   79 (302)
                      +.+|-..|+++.|+-|+.+|.|||.||.|.+|.+.       ....+++..+.+|.-+|+++...+-.-..+|+|+|.|+
T Consensus       119 ~~aHYQ~ITcL~fs~dgs~iiTgskDg~V~vW~l~~lv~a~~~~~~~p~~~f~~HtlsITDl~ig~Gg~~~rl~TaS~D~  198 (476)
T KOG0646|consen  119 LSAHYQSITCLKFSDDGSHIITGSKDGAVLVWLLTDLVSADNDHSVKPLHIFSDHTLSITDLQIGSGGTNARLYTASEDR  198 (476)
T ss_pred             HHhhccceeEEEEeCCCcEEEecCCCccEEEEEEEeecccccCCCccceeeeccCcceeEEEEecCCCccceEEEecCCc
Confidence            56899999999999999999999999999999872       12345678899999999998875422245899999999


Q ss_pred             eEEEEEcCCCCceeEEEEecCCCCCeeEEEecCCCCCcEEEEEecCCcEEEEEecCCCCe--------------eeeeec
Q 022111           80 QVIIWKEGNQNDWTQAHTFNDHKSSVNSIAWAPHELGLSLACGSSDGNISVFTATADGGW--------------DTTRID  145 (302)
Q Consensus        80 ~i~iwd~~~~~~~~~~~~~~~h~~~i~~l~~~pd~~~~~l~sg~~d~~v~~~~~~~~~~~--------------~~~~~~  145 (302)
                      ++|+||+..+.   .+.++. -.-.|.+++..|-  ...+..|+.+|.|.+.++......              ....+ 
T Consensus       199 t~k~wdlS~g~---LLlti~-fp~si~av~lDpa--e~~~yiGt~~G~I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~~-  271 (476)
T KOG0646|consen  199 TIKLWDLSLGV---LLLTIT-FPSSIKAVALDPA--ERVVYIGTEEGKIFQNLLFKLSGQSAGVNQKGRHEENTQINVL-  271 (476)
T ss_pred             eEEEEEeccce---eeEEEe-cCCcceeEEEccc--ccEEEecCCcceEEeeehhcCCcccccccccccccccceeeee-
Confidence            99999997763   344443 4567899999987  458999999999988766432110              11112 


Q ss_pred             ccCCC--CeEEEEeCCCCCCCceeecccCCCceeEEEeeCCCcEEEEEEecCccccccccccccCCCceeEEEeeCCCCC
Q 022111          146 QAHPV--GVTSVSWAPAMAPGALVGLGLLDPVQKLASCGCDNTVKVWKMYNGIWKMDCFPALQMHSDWVRSVAWAPNLGL  223 (302)
Q Consensus       146 ~~h~~--~v~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~D~~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~  223 (302)
                      .+|..  .|+|++.+.+              +.+|+||+.||.|+|||+.+.    .+++++....++|+-+.+.|-.  
T Consensus       272 ~Gh~~~~~ITcLais~D--------------gtlLlSGd~dg~VcvWdi~S~----Q~iRtl~~~kgpVtnL~i~~~~--  331 (476)
T KOG0646|consen  272 VGHENESAITCLAISTD--------------GTLLLSGDEDGKVCVWDIYSK----QCIRTLQTSKGPVTNLQINPLE--  331 (476)
T ss_pred             ccccCCcceeEEEEecC--------------ccEEEeeCCCCCEEEEecchH----HHHHHHhhhccccceeEeeccc--
Confidence            25666  7888888765              489999999999999999876    4666666678889999997642  


Q ss_pred             CccEEEEEecCCeEEEEEec
Q 022111          224 PKSTIASASQDGTVVIWTCA  243 (302)
Q Consensus       224 ~~~~l~s~s~D~~i~iwd~~  243 (302)
                       +..+..-.....+-.|++.
T Consensus       332 -~~~~l~~~~~ps~~~~~lk  350 (476)
T KOG0646|consen  332 -RGIILFEHKQPSLPNPHLK  350 (476)
T ss_pred             -cceecccccCccCCchHhh
Confidence             1233333333345555543

>KOG2048 consensus WD40 repeat protein [General function prediction only]

Probab=99.80  E-value=4.8e-17  Score=144.92  Aligned_cols=244  Identities=21%  Similarity=0.293  Sum_probs=169.2

Q ss_pred             ccccc-cceeEEEEccCCCEEEEeeCCCcEEEEeecCCCceEEEEecCcccCeEEEEeeCCCCCCEEEEEeCCCeEEEEE
Q 022111            7 ETGHE-DTVHDVAMDFYGKRLATASSDSSIKIIGLSNSASQHLATLKGHRGPVWQVAWAHPKFGSILASCSYDGQVIIWK   85 (302)
Q Consensus         7 ~~~h~-~~v~~~~~s~~~~~l~s~~~d~~v~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~s~D~~i~iwd   85 (302)
                      ..|++ ..|.+++|.+ +..|.|.+.+|+|.=||+..  .+++..+..-.+.|++++.++.  ++.++.|+.||.+.+.+
T Consensus        64 i~g~~drsIE~L~W~e-~~RLFS~g~sg~i~EwDl~~--lk~~~~~d~~gg~IWsiai~p~--~~~l~IgcddGvl~~~s  138 (691)
T KOG2048|consen   64 IHGPEDRSIESLAWAE-GGRLFSSGLSGSITEWDLHT--LKQKYNIDSNGGAIWSIAINPE--NTILAIGCDDGVLYDFS  138 (691)
T ss_pred             EecCCCCceeeEEEcc-CCeEEeecCCceEEEEeccc--CceeEEecCCCcceeEEEeCCc--cceEEeecCCceEEEEe
Confidence            34554 4899999995 55788899999999999965  4556666667788999998753  68899999999766666


Q ss_pred             cCCCCceeEEEEecCCCCCeeEEEecCCCCCcEEEEEecCCcEEEEEecCCCCeeeeeecc-cCCCCeEEEEeCCCCCCC
Q 022111           86 EGNQNDWTQAHTFNDHKSSVNSIAWAPHELGLSLACGSSDGNISVFTATADGGWDTTRIDQ-AHPVGVTSVSWAPAMAPG  164 (302)
Q Consensus        86 ~~~~~~~~~~~~~~~h~~~i~~l~~~pd~~~~~l~sg~~d~~v~~~~~~~~~~~~~~~~~~-~h~~~v~~~~~~~~~~~~  164 (302)
                      .... ..+....|.-.+++|.+++|+|+  +..+++|+.|+.|++||.............. .-...-.++.|+-     
T Consensus       139 ~~p~-~I~~~r~l~rq~sRvLslsw~~~--~~~i~~Gs~Dg~Iriwd~~~~~t~~~~~~~~d~l~k~~~~iVWSv-----  210 (691)
T KOG2048|consen  139 IGPD-KITYKRSLMRQKSRVLSLSWNPT--GTKIAGGSIDGVIRIWDVKSGQTLHIITMQLDRLSKREPTIVWSV-----  210 (691)
T ss_pred             cCCc-eEEEEeecccccceEEEEEecCC--ccEEEecccCceEEEEEcCCCceEEEeeecccccccCCceEEEEE-----
Confidence            5432 22233345556799999999998  6689999999999999987654333111100 0011112344432     


Q ss_pred             ceeecccCCCceeEEEeeCCCcEEEEEEecCccccccccccccCCCceeEEEeeCCCCCCccEEEEEecCCeEEEEEecc
Q 022111          165 ALVGLGLLDPVQKLASCGCDNTVKVWKMYNGIWKMDCFPALQMHSDWVRSVAWAPNLGLPKSTIASASQDGTVVIWTCAK  244 (302)
Q Consensus       165 ~~~~~~~~~~~~~l~s~~~D~~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~l~s~s~D~~i~iwd~~~  244 (302)
                           .+..+ ..||+|-.-|+|++||...+    +.++.+..|..-|.|++-++++    +.+++++.|+.|.-+....
T Consensus       211 -----~~Lrd-~tI~sgDS~G~V~FWd~~~g----TLiqS~~~h~adVl~Lav~~~~----d~vfsaGvd~~ii~~~~~~  276 (691)
T KOG2048|consen  211 -----LFLRD-STIASGDSAGTVTFWDSIFG----TLIQSHSCHDADVLALAVADNE----DRVFSAGVDPKIIQYSLTT  276 (691)
T ss_pred             -----EEeec-CcEEEecCCceEEEEcccCc----chhhhhhhhhcceeEEEEcCCC----CeEEEccCCCceEEEEecC
Confidence                 11111 47999999999999998876    5667788899999999999884    7899999999988887665


Q ss_pred             CCcceeeeee-ccCCCcEEEEEEccCCCEEEEecCC
Q 022111          245 EGEQWEGRVL-KDFKTPVWSVSWSLTGNLLAVADAN  279 (302)
Q Consensus       245 ~~~~~~~~~~-~~~~~~v~~~~~spdg~~la~~~~d  279 (302)
                      .+..|..... ..|...+.+++..++  .|.+|+.|
T Consensus       277 ~~~~wv~~~~r~~h~hdvrs~av~~~--~l~sgG~d  310 (691)
T KOG2048|consen  277 NKSEWVINSRRDLHAHDVRSMAVIEN--ALISGGRD  310 (691)
T ss_pred             CccceeeeccccCCcccceeeeeecc--eEEeccee
Confidence            5443432211 234445666666554  55555555

>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.80  E-value=2.2e-19  Score=168.04  Aligned_cols=211  Identities=25%  Similarity=0.448  Sum_probs=161.6

Q ss_pred             cccccccceeEEEEccCCC-EEEEeeCCCcEEEEeecCCCceEEEEe--cCcccCeEEEEeeCCCCCCEEEEEeCCCeEE
Q 022111            6 IETGHEDTVHDVAMDFYGK-RLATASSDSSIKIIGLSNSASQHLATL--KGHRGPVWQVAWAHPKFGSILASCSYDGQVI   82 (302)
Q Consensus         6 ~~~~h~~~v~~~~~s~~~~-~l~s~~~d~~v~lw~~~~~~~~~~~~~--~~h~~~v~~v~~~~~~~~~~l~s~s~D~~i~   82 (302)
                      .+..|++.|..+.|++... .||+|+.||+|.|||+.... .+ .+.  ..-...|.+++|+. +..++||+++.++.+.
T Consensus       111 ~~~~h~G~V~gLDfN~~q~nlLASGa~~geI~iWDlnn~~-tP-~~~~~~~~~~eI~~lsWNr-kvqhILAS~s~sg~~~  187 (1049)
T KOG0307|consen  111 TKSKHTGPVLGLDFNPFQGNLLASGADDGEILIWDLNKPE-TP-FTPGSQAPPSEIKCLSWNR-KVSHILASGSPSGRAV  187 (1049)
T ss_pred             hhcccCCceeeeeccccCCceeeccCCCCcEEEeccCCcC-CC-CCCCCCCCcccceEeccch-hhhHHhhccCCCCCce
Confidence            3567999999999998764 99999999999999996522 11 111  12356799999975 4567999999999999


Q ss_pred             EEEcCCCCceeEEEEecCCC--CCeeEEEecCCCCCcEEEEEecCC---cEEEEEecCCCCeeeeeecccCCCCeEEEEe
Q 022111           83 IWKEGNQNDWTQAHTFNDHK--SSVNSIAWAPHELGLSLACGSSDG---NISVFTATADGGWDTTRIDQAHPVGVTSVSW  157 (302)
Q Consensus        83 iwd~~~~~~~~~~~~~~~h~--~~i~~l~~~pd~~~~~l~sg~~d~---~v~~~~~~~~~~~~~~~~~~~h~~~v~~~~~  157 (302)
                      |||++...   ++-.+..+.  ..+..++|+|+. ...+++++.|.   .|.+||++-... . ....++|..+|.++.|
T Consensus       188 iWDlr~~~---pii~ls~~~~~~~~S~l~WhP~~-aTql~~As~dd~~PviqlWDlR~ass-P-~k~~~~H~~GilslsW  261 (1049)
T KOG0307|consen  188 IWDLRKKK---PIIKLSDTPGRMHCSVLAWHPDH-ATQLLVASGDDSAPVIQLWDLRFASS-P-LKILEGHQRGILSLSW  261 (1049)
T ss_pred             eccccCCC---cccccccCCCccceeeeeeCCCC-ceeeeeecCCCCCceeEeecccccCC-c-hhhhcccccceeeecc
Confidence            99998753   333344343  346799999996 34566666554   788999874321 1 1222489999999999


Q ss_pred             CCCCCCCceeecccCCCceeEEEeeCCCcEEEEEEecCccccccccccccCCCceeEEEeeCCCCCCccEEEEEecCCeE
Q 022111          158 APAMAPGALVGLGLLDPVQKLASCGCDNTVKVWKMYNGIWKMDCFPALQMHSDWVRSVAWAPNLGLPKSTIASASQDGTV  237 (302)
Q Consensus       158 ~~~~~~~~~~~~~~~~~~~~l~s~~~D~~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~l~s~s~D~~i  237 (302)
                      ++..             ..+|+||+.|+.|.+|+..++    +.+..+-...+|+.++.|+|..   +..|+..+.||.|
T Consensus       262 c~~D-------------~~lllSsgkD~~ii~wN~~tg----Evl~~~p~~~nW~fdv~w~pr~---P~~~A~asfdgkI  321 (1049)
T KOG0307|consen  262 CPQD-------------PRLLLSSGKDNRIICWNPNTG----EVLGELPAQGNWCFDVQWCPRN---PSVMAAASFDGKI  321 (1049)
T ss_pred             CCCC-------------chhhhcccCCCCeeEecCCCc----eEeeecCCCCcceeeeeecCCC---cchhhhheeccce
Confidence            9864             478999999999999999886    4455666678999999999974   6789999999999


Q ss_pred             EEEEeccC
Q 022111          238 VIWTCAKE  245 (302)
Q Consensus       238 ~iwd~~~~  245 (302)
                      .|+.+...
T Consensus       322 ~I~sl~~~  329 (1049)
T KOG0307|consen  322 SIYSLQGT  329 (1049)
T ss_pred             eeeeeecC
Confidence            99998764

>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]

Probab=99.80  E-value=1.7e-17  Score=136.13  Aligned_cols=213  Identities=23%  Similarity=0.362  Sum_probs=166.1

Q ss_pred             ccCeEEEEeeCCCCCCEEEEEeCCCeEEEEEcCCCCceeEEEEecCCCCCeeEEEecCCCCCcEEEEEecCCcEEEEEec
Q 022111           55 RGPVWQVAWAHPKFGSILASCSYDGQVIIWKEGNQNDWTQAHTFNDHKSSVNSIAWAPHELGLSLACGSSDGNISVFTAT  134 (302)
Q Consensus        55 ~~~v~~v~~~~~~~~~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~h~~~i~~l~~~pd~~~~~l~sg~~d~~v~~~~~~  134 (302)
                      ..+|++.+|+.+  .+.+|.+-....+.||.......|+..+++..|...|+.++|+|.  ...|++|+.|++-++|...
T Consensus        10 ~~pitchAwn~d--rt~iAv~~~~~evhiy~~~~~~~w~~~htls~Hd~~vtgvdWap~--snrIvtcs~drnayVw~~~   85 (361)
T KOG1523|consen   10 LEPITCHAWNSD--RTQIAVSPNNHEVHIYSMLGADLWEPAHTLSEHDKIVTGVDWAPK--SNRIVTCSHDRNAYVWTQP   85 (361)
T ss_pred             cCceeeeeecCC--CceEEeccCCceEEEEEecCCCCceeceehhhhCcceeEEeecCC--CCceeEccCCCCccccccC
Confidence            467999999854  788999999999999998877778999999999999999999997  4589999999999999987


Q ss_pred             CCCCeeeeeecccCCCCeEEEEeCCCCCCCceeecccCCCceeEEEeeCCCcEEEEEEecC-ccccccccccccCCCcee
Q 022111          135 ADGGWDTTRIDQAHPVGVTSVSWAPAMAPGALVGLGLLDPVQKLASCGCDNTVKVWKMYNG-IWKMDCFPALQMHSDWVR  213 (302)
Q Consensus       135 ~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~D~~v~iwd~~~~-~~~~~~~~~~~~h~~~v~  213 (302)
                      +++.|........+...++++.|+|..              ..||+||.-+.|.||-.... .|=+ ..+.-+.+++.|.
T Consensus        86 ~~~~WkptlvLlRiNrAAt~V~WsP~e--------------nkFAVgSgar~isVcy~E~ENdWWV-sKhikkPirStv~  150 (361)
T KOG1523|consen   86 SGGTWKPTLVLLRINRAATCVKWSPKE--------------NKFAVGSGARLISVCYYEQENDWWV-SKHIKKPIRSTVT  150 (361)
T ss_pred             CCCeeccceeEEEeccceeeEeecCcC--------------ceEEeccCccEEEEEEEecccceeh-hhhhCCcccccee
Confidence            777787654444678889999999964              78999999999999887543 2211 1112245788899


Q ss_pred             EEEeeCCCCCCccEEEEEecCCeEEEEEecc-----CC--cceeee-----eeccC---CCcEEEEEEccCCCEEEEecC
Q 022111          214 SVAWAPNLGLPKSTIASASQDGTVVIWTCAK-----EG--EQWEGR-----VLKDF---KTPVWSVSWSLTGNLLAVADA  278 (302)
Q Consensus       214 ~v~~~p~~~~~~~~l~s~s~D~~i~iwd~~~-----~~--~~~~~~-----~~~~~---~~~v~~~~~spdg~~la~~~~  278 (302)
                      +++|+|+.    -.+++||.|+.+|+|..--     ..  .+|-.+     +..++   .+.+..+.|+|+|+.|+-.++
T Consensus       151 sldWhpnn----VLlaaGs~D~k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~~~~ggwvh~v~fs~sG~~lawv~H  226 (361)
T KOG1523|consen  151 SLDWHPNN----VLLAAGSTDGKCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEASSSGGWVHGVLFSPSGNRLAWVGH  226 (361)
T ss_pred             eeeccCCc----ceecccccCcceeEEEEeeeccccCCCCCCCccCCcHHHHHHhhccCCCceeeeEeCCCCCEeeEecC
Confidence            99999985    6799999999999997421     11  122111     12222   356889999999999999999


Q ss_pred             C-ceEEeeecCCc
Q 022111          279 N-NVTLWKEAVDG  290 (302)
Q Consensus       279 d-~i~~w~~~~~~  290 (302)
                      | .+.+=|...+.
T Consensus       227 ds~v~~~da~~p~  239 (361)
T KOG1523|consen  227 DSTVSFVDAAGPS  239 (361)
T ss_pred             CCceEEeecCCCc
Confidence            9 68887765544

>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]

Probab=99.80  E-value=1.4e-17  Score=147.36  Aligned_cols=258  Identities=19%  Similarity=0.286  Sum_probs=161.9

Q ss_pred             EEEcc---CCCEEEEeeCCCcEEEEeecCCCce----EEEEecCcccCeEEEEeeCCCCCCEEEEEeCCCeEEEEEcCCC
Q 022111           17 VAMDF---YGKRLATASSDSSIKIIGLSNSASQ----HLATLKGHRGPVWQVAWAHPKFGSILASCSYDGQVIIWKEGNQ   89 (302)
Q Consensus        17 ~~~s~---~~~~l~s~~~d~~v~lw~~~~~~~~----~~~~~~~h~~~v~~v~~~~~~~~~~l~s~s~D~~i~iwd~~~~   89 (302)
                      ..|++   ....||.+-.||.|.|+|......+    .+.....|...|..+.|.+-  ..+|++++.|.++++||++..
T Consensus        55 ~sFs~~~n~eHiLavadE~G~i~l~dt~~~~fr~ee~~lk~~~aH~nAifDl~wapg--e~~lVsasGDsT~r~Wdvk~s  132 (720)
T KOG0321|consen   55 DSFSAAPNKEHILAVADEDGGIILFDTKSIVFRLEERQLKKPLAHKNAIFDLKWAPG--ESLLVSASGDSTIRPWDVKTS  132 (720)
T ss_pred             ccccCCCCccceEEEecCCCceeeecchhhhcchhhhhhcccccccceeEeeccCCC--ceeEEEccCCceeeeeeeccc
Confidence            45553   2468889999999999997543211    23445689999999999752  457999999999999999765


Q ss_pred             CceeEEEEecCCCCCeeEEEecCCCCCcEEEEEecCCcEEEEEecCCCCeee----eeecccCCCC---eEEE-----Ee
Q 022111           90 NDWTQAHTFNDHKSSVNSIAWAPHELGLSLACGSSDGNISVFTATADGGWDT----TRIDQAHPVG---VTSV-----SW  157 (302)
Q Consensus        90 ~~~~~~~~~~~h~~~i~~l~~~pd~~~~~l~sg~~d~~v~~~~~~~~~~~~~----~~~~~~h~~~---v~~~-----~~  157 (302)
                      . ......+.+|...|.+++|.|++ ...+++|+.|+.|.|||.+..+.-.+    ..+...|...   ..-+     .|
T Consensus       133 ~-l~G~~~~~GH~~SvkS~cf~~~n-~~vF~tGgRDg~illWD~R~n~~d~~e~~~~~~~~~~n~~ptpskp~~kr~~k~  210 (720)
T KOG0321|consen  133 R-LVGGRLNLGHTGSVKSECFMPTN-PAVFCTGGRDGEILLWDCRCNGVDALEEFDNRIYGRHNTAPTPSKPLKKRIRKW  210 (720)
T ss_pred             e-eecceeecccccccchhhhccCC-CcceeeccCCCcEEEEEEeccchhhHHHHhhhhhccccCCCCCCchhhcccccc
Confidence            3 12233478899999999999985 46799999999999999985431000    1111112110   0000     00


Q ss_pred             CCCCCCCce---eecccCCCceeEEEeeC-CCcEEEEEEecCcccccc--ccc--cccC---CCceeEEEeeCCCCCCcc
Q 022111          158 APAMAPGAL---VGLGLLDPVQKLASCGC-DNTVKVWKMYNGIWKMDC--FPA--LQMH---SDWVRSVAWAPNLGLPKS  226 (302)
Q Consensus       158 ~~~~~~~~~---~~~~~~~~~~~l~s~~~-D~~v~iwd~~~~~~~~~~--~~~--~~~h---~~~v~~v~~~p~~~~~~~  226 (302)
                      -  ...+.+   +...++.+...|||+|. |+.|+|||++........  ...  +--|   .-.+.++.....    |.
T Consensus       211 k--A~s~ti~ssvTvv~fkDe~tlaSaga~D~~iKVWDLRk~~~~~r~ep~~~~~~~t~skrs~G~~nL~lDss----Gt  284 (720)
T KOG0321|consen  211 K--AASNTIFSSVTVVLFKDESTLASAGAADSTIKVWDLRKNYTAYRQEPRGSDKYPTHSKRSVGQVNLILDSS----GT  284 (720)
T ss_pred             c--cccCceeeeeEEEEEeccceeeeccCCCcceEEEeecccccccccCCCcccCccCcccceeeeEEEEecCC----CC
Confidence            0  000111   11223345578999888 999999999876432111  111  1112   123444444333    46


Q ss_pred             EEEEEecCCeEEEEEeccCCcceeeeeeccCCC----cEE-EEEEccCCCEEEEecCC-ceEEeeecC
Q 022111          227 TIASASQDGTVVIWTCAKEGEQWEGRVLKDFKT----PVW-SVSWSLTGNLLAVADAN-NVTLWKEAV  288 (302)
Q Consensus       227 ~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~~~~----~v~-~~~~spdg~~la~~~~d-~i~~w~~~~  288 (302)
                      +|.+.+.|++|..|++......    ....|.+    .++ .-..|||+.+|++|+.| ...+|.+..
T Consensus       285 ~L~AsCtD~sIy~ynm~s~s~s----P~~~~sg~~~~sf~vks~lSpd~~~l~SgSsd~~ayiw~vs~  348 (720)
T KOG0321|consen  285 YLFASCTDNSIYFYNMRSLSIS----PVAEFSGKLNSSFYVKSELSPDDCSLLSGSSDEQAYIWVVSS  348 (720)
T ss_pred             eEEEEecCCcEEEEeccccCcC----chhhccCcccceeeeeeecCCCCceEeccCCCcceeeeeecC
Confidence            6666666999999999864311    1122222    111 23468999999999999 799999753

>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]

Probab=99.79  E-value=2.6e-17  Score=135.24  Aligned_cols=252  Identities=16%  Similarity=0.258  Sum_probs=168.2

Q ss_pred             eeEEEEccCCCEEEEeeCCCcEEEEeec-----CCCceE-----EEEecC-cccCeEEEEeeC-----CCCCCEEEEEeC
Q 022111           14 VHDVAMDFYGKRLATASSDSSIKIIGLS-----NSASQH-----LATLKG-HRGPVWQVAWAH-----PKFGSILASCSY   77 (302)
Q Consensus        14 v~~~~~s~~~~~l~s~~~d~~v~lw~~~-----~~~~~~-----~~~~~~-h~~~v~~v~~~~-----~~~~~~l~s~s~   77 (302)
                      ..++.|+|||..|++-+.|..+++|++-     .+...+     ..+++= -...|+.-+|-+     +.+..++|+.+.
T Consensus        52 ~kgckWSPDGSciL~~sedn~l~~~nlP~dlys~~~~~~~~~~~~~~~r~~eg~tvydy~wYs~M~s~qP~t~l~a~ssr  131 (406)
T KOG2919|consen   52 LKGCKWSPDGSCILSLSEDNCLNCWNLPFDLYSKKADGPLNFSKHLSYRYQEGETVYDYCWYSRMKSDQPSTNLFAVSSR  131 (406)
T ss_pred             hccceeCCCCceEEeecccCeeeEEecChhhcccCCCCccccccceeEEeccCCEEEEEEeeeccccCCCccceeeeccc
Confidence            4568899999999999999999999972     110000     011110 123466666642     113468888899


Q ss_pred             CCeEEEEEcCCCCceeEEEEecCCCCCe---eEEEecCCCCCcEEEEEecCCcEEEEEecCCCC-eeee-ee---cccCC
Q 022111           78 DGQVIIWKEGNQNDWTQAHTFNDHKSSV---NSIAWAPHELGLSLACGSSDGNISVFTATADGG-WDTT-RI---DQAHP  149 (302)
Q Consensus        78 D~~i~iwd~~~~~~~~~~~~~~~h~~~i---~~l~~~pd~~~~~l~sg~~d~~v~~~~~~~~~~-~~~~-~~---~~~h~  149 (302)
                      |.-|++||.-++.....-..+ .|.+.+   -+++|+||  |.+|.+ +..+.|++||....+. .... .+   +.+..
T Consensus       132 ~~PIh~wdaftG~lraSy~~y-dh~de~taAhsL~Fs~D--Geqlfa-GykrcirvFdt~RpGr~c~vy~t~~~~k~gq~  207 (406)
T KOG2919|consen  132 DQPIHLWDAFTGKLRASYRAY-DHQDEYTAAHSLQFSPD--GEQLFA-GYKRCIRVFDTSRPGRDCPVYTTVTKGKFGQK  207 (406)
T ss_pred             cCceeeeeccccccccchhhh-hhHHhhhhheeEEecCC--CCeEee-cccceEEEeeccCCCCCCcchhhhhccccccc
Confidence            999999998766421111122 255544   48999999  666665 5788999999843332 2211 11   11224


Q ss_pred             CCeEEEEeCCCCCCCceeecccCCCceeEEEeeCCCcEEEEEEecCccccccccccccCCCceeEEEeeCCCCCCccEEE
Q 022111          150 VGVTSVSWAPAMAPGALVGLGLLDPVQKLASCGCDNTVKVWKMYNGIWKMDCFPALQMHSDWVRSVAWAPNLGLPKSTIA  229 (302)
Q Consensus       150 ~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~D~~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~l~  229 (302)
                      .-+.+++++|..             .+.++.++....+-||.-...    ..+..+.+|.+.|+.++|+|+|    +.|.
T Consensus       208 giisc~a~sP~~-------------~~~~a~gsY~q~~giy~~~~~----~pl~llggh~gGvThL~~~edG----n~lf  266 (406)
T KOG2919|consen  208 GIISCFAFSPMD-------------SKTLAVGSYGQRVGIYNDDGR----RPLQLLGGHGGGVTHLQWCEDG----NKLF  266 (406)
T ss_pred             ceeeeeeccCCC-------------CcceeeecccceeeeEecCCC----CceeeecccCCCeeeEEeccCc----Ceec
Confidence            457888999864             468899999988888876543    3456678999999999999996    6777


Q ss_pred             EEec-CCeEEEEEeccCCcceeeeeeccCCC----cEEEEEEccCCCEEEEecCC-ceEEeeecCCceEE
Q 022111          230 SASQ-DGTVVIWTCAKEGEQWEGRVLKDFKT----PVWSVSWSLTGNLLAVADAN-NVTLWKEAVDGEWQ  293 (302)
Q Consensus       230 s~s~-D~~i~iwd~~~~~~~~~~~~~~~~~~----~v~~~~~spdg~~la~~~~d-~i~~w~~~~~~~~~  293 (302)
                      +|+. |-.|-.||+|....+.  -.+..+.+    .| -....|+|++||+|+-+ .|++||...-|.|.
T Consensus       267 sGaRk~dkIl~WDiR~~~~pv--~~L~rhv~~TNQRI-~FDld~~~~~LasG~tdG~V~vwdlk~~gn~~  333 (406)
T KOG2919|consen  267 SGARKDDKILCWDIRYSRDPV--YALERHVGDTNQRI-LFDLDPKGEILASGDTDGSVRVWDLKDLGNEV  333 (406)
T ss_pred             ccccCCCeEEEEeehhccchh--hhhhhhccCccceE-EEecCCCCceeeccCCCccEEEEecCCCCCcc
Confidence            8774 7889999998653321  11122222    22 24556899999999888 69999998766644

>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]

Probab=99.79  E-value=2.8e-18  Score=149.90  Aligned_cols=225  Identities=24%  Similarity=0.316  Sum_probs=161.0

Q ss_pred             ccccccceeEEEEccCCCEEEEeeCCCcEEEEeec------CCCceEEEEecCcccCeEEEEeeCCCCCCEEEEEeCCCe
Q 022111            7 ETGHEDTVHDVAMDFYGKRLATASSDSSIKIIGLS------NSASQHLATLKGHRGPVWQVAWAHPKFGSILASCSYDGQ   80 (302)
Q Consensus         7 ~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~lw~~~------~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~s~D~~   80 (302)
                      +.-|.+-|+.+.|.+-...|++++.|+++++|++.      ....+++.+|.+|.++|.|++++.  .+..+.+|+.||+
T Consensus       290 l~s~~d~ir~l~~~~sep~lit~sed~~lk~WnLqk~~~s~~~~~epi~tfraH~gPVl~v~v~~--n~~~~ysgg~Dg~  367 (577)
T KOG0642|consen  290 LRSHDDCIRALAFHPSEPVLITASEDGTLKLWNLQKAKKSAEKDVEPILTFRAHEGPVLCVVVPS--NGEHCYSGGIDGT  367 (577)
T ss_pred             eecchhhhhhhhcCCCCCeEEEeccccchhhhhhcccCCccccceeeeEEEecccCceEEEEecC--CceEEEeeccCce
Confidence            44688889999999988899999999999999992      122467889999999999999965  3889999999999


Q ss_pred             EEEEEcCCCC-------ceeEEEEecCCCCCeeEEEecCCCCCcEEEEEecCCcEEEEEecCCCCeeeeeecccCCCC--
Q 022111           81 VIIWKEGNQN-------DWTQAHTFNDHKSSVNSIAWAPHELGLSLACGSSDGNISVFTATADGGWDTTRIDQAHPVG--  151 (302)
Q Consensus        81 i~iwd~~~~~-------~~~~~~~~~~h~~~i~~l~~~pd~~~~~l~sg~~d~~v~~~~~~~~~~~~~~~~~~~h~~~--  151 (302)
                      |+.|++..+.       .......+.||.+.|..+++++.  ..+|++++.||++++|........ +....+.|..+  
T Consensus       368 I~~w~~p~n~dp~ds~dp~vl~~~l~Ghtdavw~l~~s~~--~~~Llscs~DgTvr~w~~~~~~~~-~f~~~~e~g~Pls  444 (577)
T KOG0642|consen  368 IRCWNLPPNQDPDDSYDPSVLSGTLLGHTDAVWLLALSST--KDRLLSCSSDGTVRLWEPTEESPC-TFGEPKEHGYPLS  444 (577)
T ss_pred             eeeeccCCCCCcccccCcchhccceeccccceeeeeeccc--ccceeeecCCceEEeeccCCcCcc-ccCCccccCCcce
Confidence            9999654211       11234567899999999999976  347999999999999976533220 01111111111  


Q ss_pred             eEEEEeCCCC----------------------------CCCc----eee-cccCCCceeEEEeeCCCcEEEEEEecCccc
Q 022111          152 VTSVSWAPAM----------------------------APGA----LVG-LGLLDPVQKLASCGCDNTVKVWKMYNGIWK  198 (302)
Q Consensus       152 v~~~~~~~~~----------------------------~~~~----~~~-~~~~~~~~~l~s~~~D~~v~iwd~~~~~~~  198 (302)
                      +....|-|..                            .++.    ... +..-+...+.+++..|+.|+++|..++   
T Consensus       445 vd~~ss~~a~~~~s~~~~~~~~~~~ev~s~~~~~~s~~~~~~~~~~~in~vVs~~~~~~~~~~hed~~Ir~~dn~~~---  521 (577)
T KOG0642|consen  445 VDRTSSRPAHSLASFRFGYTSIDDMEVVSDLLIFESSASPGPRRYPQINKVVSHPTADITFTAHEDRSIRFFDNKTG---  521 (577)
T ss_pred             EeeccchhHhhhhhcccccccchhhhhhhheeeccccCCCcccccCccceEEecCCCCeeEecccCCceeccccccc---
Confidence            1111111100                            0000    000 001123467899999999999998876   


Q ss_pred             cccccccccCCCceeEEEeeCCCCCCccEEEEEecCCeEEEEEecc
Q 022111          199 MDCFPALQMHSDWVRSVAWAPNLGLPKSTIASASQDGTVVIWTCAK  244 (302)
Q Consensus       199 ~~~~~~~~~h~~~v~~v~~~p~~~~~~~~l~s~s~D~~i~iwd~~~  244 (302)
                       ..+.....|...+.++++.|++    -+|++++.|+.+++|.+..
T Consensus       522 -~~l~s~~a~~~svtslai~~ng----~~l~s~s~d~sv~l~kld~  562 (577)
T KOG0642|consen  522 -KILHSMVAHKDSVTSLAIDPNG----PYLMSGSHDGSVRLWKLDV  562 (577)
T ss_pred             -ccchheeeccceecceeecCCC----ceEEeecCCceeehhhccc
Confidence             4566677899999999999996    7899999999999998754

>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]

Probab=99.79  E-value=1e-17  Score=140.77  Aligned_cols=222  Identities=18%  Similarity=0.254  Sum_probs=158.7

Q ss_pred             EecCcccCeEEEEeeCCCCCCEEEEEeCCCeEEEEEcCCCC----ceeEEEEecCCCCCeeEEEecCCCCCcEEEEEecC
Q 022111           50 TLKGHRGPVWQVAWAHPKFGSILASCSYDGQVIIWKEGNQN----DWTQAHTFNDHKSSVNSIAWAPHELGLSLACGSSD  125 (302)
Q Consensus        50 ~~~~h~~~v~~v~~~~~~~~~~l~s~s~D~~i~iwd~~~~~----~~~~~~~~~~h~~~i~~l~~~pd~~~~~l~sg~~d  125 (302)
                      .+.||.++|..+.|+|- +...|||||+|.+|+||.+..+.    ...++..+.+|..+|.-++|+|... ..|++++.|
T Consensus        76 ~v~GHt~~vLDi~w~Pf-nD~vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L~gH~rrVg~V~wHPtA~-NVLlsag~D  153 (472)
T KOG0303|consen   76 LVCGHTAPVLDIDWCPF-NDCVIASGSEDTKVMVWQIPENGLTRDLTEPVVELYGHQRRVGLVQWHPTAP-NVLLSAGSD  153 (472)
T ss_pred             CccCccccccccccCcc-CCceeecCCCCceEEEEECCCcccccCcccceEEEeecceeEEEEeecccch-hhHhhccCC
Confidence            45799999999999864 46899999999999999986542    2345678899999999999999863 579999999


Q ss_pred             CcEEEEEecCCCCeeeeeecccCCCCeEEEEeCCCCCCCceeecccCCCceeEEEeeCCCcEEEEEEecCcccccccccc
Q 022111          126 GNISVFTATADGGWDTTRIDQAHPVGVTSVSWAPAMAPGALVGLGLLDPVQKLASCGCDNTVKVWKMYNGIWKMDCFPAL  205 (302)
Q Consensus       126 ~~v~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~D~~v~iwd~~~~~~~~~~~~~~  205 (302)
                      ++|.+|++.++.  .+..+  .|+..|.++.|+.+              |.+|+|.+.|+.|||||.+++.    .+..-
T Consensus       154 n~v~iWnv~tge--ali~l--~hpd~i~S~sfn~d--------------Gs~l~TtckDKkvRv~dpr~~~----~v~e~  211 (472)
T KOG0303|consen  154 NTVSIWNVGTGE--ALITL--DHPDMVYSMSFNRD--------------GSLLCTTCKDKKVRVIDPRRGT----VVSEG  211 (472)
T ss_pred             ceEEEEeccCCc--eeeec--CCCCeEEEEEeccC--------------CceeeeecccceeEEEcCCCCc----Eeeec
Confidence            999999997653  22333  49999999999876              4799999999999999999873    33333


Q ss_pred             ccCCCc-eeEEEeeCCCCCCccEEEEEe----cCCeEEEEEeccCCcceeeeeeccCCCcEEEEEEccCCCEE-EEecCC
Q 022111          206 QMHSDW-VRSVAWAPNLGLPKSTIASAS----QDGTVVIWTCAKEGEQWEGRVLKDFKTPVWSVSWSLTGNLL-AVADAN  279 (302)
Q Consensus       206 ~~h~~~-v~~v~~~p~~~~~~~~l~s~s----~D~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l-a~~~~d  279 (302)
                      .+|.+. -..+-|-.++    . |+|.+    .++.+-+||......+..... .+-++.|.==-|.||.++| ++|-+|
T Consensus       212 ~~heG~k~~Raifl~~g----~-i~tTGfsr~seRq~aLwdp~nl~eP~~~~e-lDtSnGvl~PFyD~dt~ivYl~GKGD  285 (472)
T KOG0303|consen  212 VAHEGAKPARAIFLASG----K-IFTTGFSRMSERQIALWDPNNLEEPIALQE-LDTSNGVLLPFYDPDTSIVYLCGKGD  285 (472)
T ss_pred             ccccCCCcceeEEeccC----c-eeeeccccccccceeccCcccccCcceeEE-eccCCceEEeeecCCCCEEEEEecCC
Confidence            456543 2234455453    4 44443    467899998765332211111 1223445434467777766 556566


Q ss_pred             -ceEEeeecCCce----EEEeeecCCC
Q 022111          280 -NVTLWKEAVDGE----WQQVSVVEPQ  301 (302)
Q Consensus       280 -~i~~w~~~~~~~----~~~~~~~~~~  301 (302)
                       +|+.|....+.+    +..+...|||
T Consensus       286 ~~IRYyEit~d~P~~hyln~f~S~epQ  312 (472)
T KOG0303|consen  286 SSIRYFEITNEPPFVHYLNTFSSKEPQ  312 (472)
T ss_pred             cceEEEEecCCCceeEEecccccCCcc
Confidence             799999876664    5666777777

>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]

Probab=99.79  E-value=8.7e-19  Score=159.13  Aligned_cols=257  Identities=21%  Similarity=0.314  Sum_probs=176.5

Q ss_pred             ccccccceeEEEEccCCCEEEEeeCCCcEEEEeecCCCceEEEEecCcccCeEEEEeeCCCCCCEEEEEeCCCeEEEEEc
Q 022111            7 ETGHEDTVHDVAMDFYGKRLATASSDSSIKIIGLSNSASQHLATLKGHRGPVWQVAWAHPKFGSILASCSYDGQVIIWKE   86 (302)
Q Consensus         7 ~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~s~D~~i~iwd~   86 (302)
                      +.||..+|+|+.|+..|+++.+|++|..|+||..++  ..++.++.||++.|+.++.+..  ..++|++|.|..|++|.+
T Consensus       186 LlgH~naVyca~fDrtg~~Iitgsdd~lvKiwS~et--~~~lAs~rGhs~ditdlavs~~--n~~iaaaS~D~vIrvWrl  261 (1113)
T KOG0644|consen  186 LLGHRNAVYCAIFDRTGRYIITGSDDRLVKIWSMET--ARCLASCRGHSGDITDLAVSSN--NTMIAAASNDKVIRVWRL  261 (1113)
T ss_pred             HHhhhhheeeeeeccccceEeecCccceeeeeeccc--hhhhccCCCCccccchhccchh--hhhhhhcccCceEEEEec
Confidence            559999999999999999999999999999999644  5678899999999999998643  568999999999999998


Q ss_pred             CCCCceeEEEEecCCCCCeeEEEecCCCCCcEEEEEecCCcEEEEEec-CCCCeeeeeecccCCCCeEEEEeCCCCC---
Q 022111           87 GNQNDWTQAHTFNDHKSSVNSIAWAPHELGLSLACGSSDGNISVFTAT-ADGGWDTTRIDQAHPVGVTSVSWAPAMA---  162 (302)
Q Consensus        87 ~~~~~~~~~~~~~~h~~~i~~l~~~pd~~~~~l~sg~~d~~v~~~~~~-~~~~~~~~~~~~~h~~~v~~~~~~~~~~---  162 (302)
                      .++   .++..+.+|++.|++++|+|-.      +.+.||++++||.+ ......+..........+.++.+.....   
T Consensus       262 ~~~---~pvsvLrghtgavtaiafsP~~------sss~dgt~~~wd~r~~~~~y~prp~~~~~~~~~~s~~~~~~~~~f~  332 (1113)
T KOG0644|consen  262 PDG---APVSVLRGHTGAVTAIAFSPRA------SSSDDGTCRIWDARLEPRIYVPRPLKFTEKDLVDSILFENNGDRFL  332 (1113)
T ss_pred             CCC---chHHHHhccccceeeeccCccc------cCCCCCceEeccccccccccCCCCCCcccccceeeeeccccccccc
Confidence            876   3677889999999999999952      66889999999976 1100000011000011222222211100   


Q ss_pred             ----CC--c-------------e-eecccCCCceeEEEeeCCCcEEEEEEecCccccccccccccCCCceeEEEeeCCCC
Q 022111          163 ----PG--A-------------L-VGLGLLDPVQKLASCGCDNTVKVWKMYNGIWKMDCFPALQMHSDWVRSVAWAPNLG  222 (302)
Q Consensus       163 ----~~--~-------------~-~~~~~~~~~~~l~s~~~D~~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~  222 (302)
                          .+  .             + +.....+-+...+++=.+-.+++|++.++    ...+.+.+|.+.+.-+.++|-. 
T Consensus       333 Tgs~d~ea~n~e~~~l~~~~~~lif~t~ssd~~~~~~~ar~~~~~~vwnl~~g----~l~H~l~ghsd~~yvLd~Hpfn-  407 (1113)
T KOG0644|consen  333 TGSRDGEARNHEFEQLAWRSNLLIFVTRSSDLSSIVVTARNDHRLCVWNLYTG----QLLHNLMGHSDEVYVLDVHPFN-  407 (1113)
T ss_pred             cccCCcccccchhhHhhhhccceEEEeccccccccceeeeeeeEeeeeecccc----hhhhhhcccccceeeeeecCCC-
Confidence                00  0             0 00000011123333434556777888766    3457788999999999999963 


Q ss_pred             CCccEEEEEecCCeEEEEEeccCCcceeeeeeccCCCcEEEEEEccCCCEEEEecCC-ceEEeee
Q 022111          223 LPKSTIASASQDGTVVIWTCAKEGEQWEGRVLKDFKTPVWSVSWSLTGNLLAVADAN-NVTLWKE  286 (302)
Q Consensus       223 ~~~~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~la~~~~d-~i~~w~~  286 (302)
                        +....+++.||...|||+-..-.. +... .+ ...+...+||+||.-++...+- .+.|...
T Consensus       408 --~ri~msag~dgst~iwdi~eg~pi-k~y~-~g-h~kl~d~kFSqdgts~~lsd~hgql~i~g~  467 (1113)
T KOG0644|consen  408 --PRIAMSAGYDGSTIIWDIWEGIPI-KHYF-IG-HGKLVDGKFSQDGTSIALSDDHGQLYILGT  467 (1113)
T ss_pred             --cHhhhhccCCCceEeeecccCCcc-eeee-cc-cceeeccccCCCCceEecCCCCCceEEecc
Confidence              577889999999999998543211 1111 22 4567788999999888777544 4777654

>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]

Probab=99.78  E-value=2.5e-17  Score=135.51  Aligned_cols=260  Identities=20%  Similarity=0.390  Sum_probs=185.6

Q ss_pred             cccccccceeEEEEccC-----CCEEEEeeCCCcEEEEeecCCCce-EEEEe--cCcccCeEEEEeeCCCC--CCEEEEE
Q 022111            6 IETGHEDTVHDVAMDFY-----GKRLATASSDSSIKIIGLSNSASQ-HLATL--KGHRGPVWQVAWAHPKF--GSILASC   75 (302)
Q Consensus         6 ~~~~h~~~v~~~~~s~~-----~~~l~s~~~d~~v~lw~~~~~~~~-~~~~~--~~h~~~v~~v~~~~~~~--~~~l~s~   75 (302)
                      +...|..++..+.|.+.     ...+|+.|. ..+.+|........ .++..  ..|....+.++|+-+..  ..+||.+
T Consensus        33 l~ed~~~~I~gv~fN~~~~~~e~~vfatvG~-~rvtiy~c~~d~~ir~lq~y~D~d~~Esfytcsw~yd~~~~~p~la~~  111 (385)
T KOG1034|consen   33 LKEDHNKPIFGVAFNSFLGCDEPQVFATVGG-NRVTIYECPGDGGIRLLQSYADEDHDESFYTCSWSYDSNTGNPFLAAG  111 (385)
T ss_pred             hhccCCCccceeeeehhcCCCCCceEEEeCC-cEEEEEEECCccceeeeeeccCCCCCcceEEEEEEecCCCCCeeEEee
Confidence            45688899999999853     256777664 46788887543222 22222  23677778888865432  4578899


Q ss_pred             eCCCeEEEEEcCCCCceeEEEEecCCCCCeeEEEecCCCCCcEEEEEecCCcEEEEEecCCCCeeeeeecccCCCCeEEE
Q 022111           76 SYDGQVIIWKEGNQNDWTQAHTFNDHKSSVNSIAWAPHELGLSLACGSSDGNISVFTATADGGWDTTRIDQAHPVGVTSV  155 (302)
Q Consensus        76 s~D~~i~iwd~~~~~~~~~~~~~~~h~~~i~~l~~~pd~~~~~l~sg~~d~~v~~~~~~~~~~~~~~~~~~~h~~~v~~~  155 (302)
                      +.-|.|+|.|+..+   .....+.+|...|+.+.++|+. .++++++|.|..|++|++++.......--..+|...|.++
T Consensus       112 G~~GvIrVid~~~~---~~~~~~~ghG~sINeik~~p~~-~qlvls~SkD~svRlwnI~~~~Cv~VfGG~egHrdeVLSv  187 (385)
T KOG1034|consen  112 GYLGVIRVIDVVSG---QCSKNYRGHGGSINEIKFHPDR-PQLVLSASKDHSVRLWNIQTDVCVAVFGGVEGHRDEVLSV  187 (385)
T ss_pred             cceeEEEEEecchh---hhccceeccCccchhhhcCCCC-CcEEEEecCCceEEEEeccCCeEEEEecccccccCcEEEE
Confidence            99999999998765   3567788999999999999985 4689999999999999998775544433334899999999


Q ss_pred             EeCCCCCCCceeecccCCCceeEEEeeCCCcEEEEEEecCcc--------------cc-------cccc---ccccCCCc
Q 022111          156 SWAPAMAPGALVGLGLLDPVQKLASCGCDNTVKVWKMYNGIW--------------KM-------DCFP---ALQMHSDW  211 (302)
Q Consensus       156 ~~~~~~~~~~~~~~~~~~~~~~l~s~~~D~~v~iwd~~~~~~--------------~~-------~~~~---~~~~h~~~  211 (302)
                      .|++++              .+|+|||.|-.+++|++.....              ..       ..++   +-..|..+
T Consensus       188 D~~~~g--------------d~i~ScGmDhslk~W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~~~~fp~fst~diHrny  253 (385)
T KOG1034|consen  188 DFSLDG--------------DRIASCGMDHSLKLWRLNVKEFKNKLELSITYSPNKTTRPFPTPKTHFPDFSTTDIHRNY  253 (385)
T ss_pred             EEcCCC--------------CeeeccCCcceEEEEecChhHHhhhhhhhcccCCCCccCcCCccccccccccccccccch
Confidence            999864              7999999999999999973210              00       1111   23468889


Q ss_pred             eeEEEeeCCCCCCccEEEEEecCCeEEEEEeccCCcce--------eeeeeccC---CCcEEEEEEc--cCCCEEEEecC
Q 022111          212 VRSVAWAPNLGLPKSTIASASQDGTVVIWTCAKEGEQW--------EGRVLKDF---KTPVWSVSWS--LTGNLLAVADA  278 (302)
Q Consensus       212 v~~v~~~p~~~~~~~~l~s~s~D~~i~iwd~~~~~~~~--------~~~~~~~~---~~~v~~~~~s--pdg~~la~~~~  278 (302)
                      |-|+.|-      +++++|=|-++.|..|..-+..+.+        ....+.++   ...||-+.|+  |-++.||.|..
T Consensus       254 VDCvrw~------gd~ilSkscenaI~~w~pgkl~e~~~~vkp~es~~Ti~~~~~~~~c~iWfirf~~d~~~~~la~gnq  327 (385)
T KOG1034|consen  254 VDCVRWF------GDFILSKSCENAIVCWKPGKLEESIHNVKPPESATTILGEFDYPMCDIWFIRFAFDPWQKMLALGNQ  327 (385)
T ss_pred             HHHHHHH------hhheeecccCceEEEEecchhhhhhhccCCCccceeeeeEeccCccceEEEEEeecHHHHHHhhccC
Confidence            9999885      4679999999999999873211110        11122222   2457777655  56799999987


Q ss_pred             C-ceEEeeecCCc
Q 022111          279 N-NVTLWKEAVDG  290 (302)
Q Consensus       279 d-~i~~w~~~~~~  290 (302)
                      . ++.+|+..-+.
T Consensus       328 ~g~v~vwdL~~~e  340 (385)
T KOG1034|consen  328 SGKVYVWDLDNNE  340 (385)
T ss_pred             CCcEEEEECCCCC
Confidence            7 79999985433

>COG2319 FOG: WD40 repeat [General function prediction only]

Probab=99.78  E-value=1.6e-15  Score=134.80  Aligned_cols=253  Identities=31%  Similarity=0.496  Sum_probs=184.7

Q ss_pred             cccccccceeEEEEccCCCEEEEeeCCCcEEEEeecCCCceEEEEecCcc-cCeEEEEeeCCCCCC-EEEEEeC-CCeEE
Q 022111            6 IETGHEDTVHDVAMDFYGKRLATASSDSSIKIIGLSNSASQHLATLKGHR-GPVWQVAWAHPKFGS-ILASCSY-DGQVI   82 (302)
Q Consensus         6 ~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~lw~~~~~~~~~~~~~~~h~-~~v~~v~~~~~~~~~-~l~s~s~-D~~i~   82 (302)
                      ....|...+..+.+.+.+..++.++.|+.+.+|+..... ..+..+.++. ..+..+.+. ..++. +++..+. |+.++
T Consensus        60 ~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~d~~~~  137 (466)
T COG2319          60 LLRGHEDSITSIAFSPDGELLLSGSSDGTIKLWDLDNGE-KLIKSLEGLHDSSVSKLALS-SPDGNSILLASSSLDGTVK  137 (466)
T ss_pred             eeeeccceEEEEEECCCCcEEEEecCCCcEEEEEcCCCc-eeEEEEeccCCCceeeEEEE-CCCcceEEeccCCCCccEE
Confidence            345899999999999999999999999999999986543 2445555533 367677763 22345 5555455 99999


Q ss_pred             EEEcCCCCceeEEEEecCCCCCeeEEEecCCCCCcEEEEEec-CCcEEEEEecCCCCeeeeeecccCCCCeEEEEeCCCC
Q 022111           83 IWKEGNQNDWTQAHTFNDHKSSVNSIAWAPHELGLSLACGSS-DGNISVFTATADGGWDTTRIDQAHPVGVTSVSWAPAM  161 (302)
Q Consensus        83 iwd~~~~~~~~~~~~~~~h~~~i~~l~~~pd~~~~~l~sg~~-d~~v~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~  161 (302)
                      +|+....  ......+..|...|..+.|+|+  +..++.++. |+.+++|+......  ...+ ..|...+.++.|+|.+
T Consensus       138 ~~~~~~~--~~~~~~~~~~~~~v~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~--~~~~-~~~~~~v~~~~~~~~~  210 (466)
T COG2319         138 LWDLSTP--GKLIRTLEGHSESVTSLAFSPD--GKLLASGSSLDGTIKLWDLRTGKP--LSTL-AGHTDPVSSLAFSPDG  210 (466)
T ss_pred             EEEecCC--CeEEEEEecCcccEEEEEECCC--CCEEEecCCCCCceEEEEcCCCce--EEee-ccCCCceEEEEEcCCc
Confidence            9998751  1355677789999999999998  447777775 99999999875222  2222 2588899999999753


Q ss_pred             CCCceeecccCCCceeEEEeeCCCcEEEEEEecCcccccccc-ccccCCCceeEEEeeCCCCCCccEEEEEecCCeEEEE
Q 022111          162 APGALVGLGLLDPVQKLASCGCDNTVKVWKMYNGIWKMDCFP-ALQMHSDWVRSVAWAPNLGLPKSTIASASQDGTVVIW  240 (302)
Q Consensus       162 ~~~~~~~~~~~~~~~~l~s~~~D~~v~iwd~~~~~~~~~~~~-~~~~h~~~v~~v~~~p~~~~~~~~l~s~s~D~~i~iw  240 (302)
                                   ...+++++.|+.+++||...+    .... .+.+|...+ -..|+|++    ..+++++.|+.+++|
T Consensus       211 -------------~~~~~~~~~d~~i~~wd~~~~----~~~~~~~~~~~~~~-~~~~~~~~----~~~~~~~~d~~~~~~  268 (466)
T COG2319         211 -------------GLLIASGSSDGTIRLWDLSTG----KLLRSTLSGHSDSV-VSSFSPDG----SLLASGSSDGTIRLW  268 (466)
T ss_pred             -------------ceEEEEecCCCcEEEEECCCC----cEEeeecCCCCcce-eEeECCCC----CEEEEecCCCcEEEe
Confidence                         125566699999999987643    2333 577787775 33899985    678899999999999


Q ss_pred             EeccCCcceeeeeeccCCCcEEEEEEccCCCEEEEecCC-ceEEeeecCCce
Q 022111          241 TCAKEGEQWEGRVLKDFKTPVWSVSWSLTGNLLAVADAN-NVTLWKEAVDGE  291 (302)
Q Consensus       241 d~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~la~~~~d-~i~~w~~~~~~~  291 (302)
                      +.+.... . ......+...+.++.|+|++..+++++.+ .+.+|+......
T Consensus       269 ~~~~~~~-~-~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~  318 (466)
T COG2319         269 DLRSSSS-L-LRTLSGHSSSVLSVAFSPDGKLLASGSSDGTVRLWDLETGKL  318 (466)
T ss_pred             eecCCCc-E-EEEEecCCccEEEEEECCCCCEEEEeeCCCcEEEEEcCCCce
Confidence            9986533 1 11224557789999999988888887777 689997654443

>KOG1539 consensus WD repeat protein [General function prediction only]

Probab=99.78  E-value=4.7e-16  Score=141.58  Aligned_cols=282  Identities=17%  Similarity=0.196  Sum_probs=188.0

Q ss_pred             ccccccceeEEEEccCCCEEEEeeCCCcEEEEeecCCCceEEEEecCcccCeEEEEeeCCCCCCEEEEEeCCCeEEEEEc
Q 022111            7 ETGHEDTVHDVAMDFYGKRLATASSDSSIKIIGLSNSASQHLATLKGHRGPVWQVAWAHPKFGSILASCSYDGQVIIWKE   86 (302)
Q Consensus         7 ~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~s~D~~i~iwd~   86 (302)
                      ++++.+.|+++-=+|--..+|.|-.+|+|.++++..  .+.+.+++-.-+.|++++|..+ ...++|+++..|.+.+||+
T Consensus       198 f~~~~s~IT~ieqsPaLDVVaiG~~~G~ViifNlK~--dkil~sFk~d~g~VtslSFrtD-G~p~las~~~~G~m~~wDL  274 (910)
T KOG1539|consen  198 FQEFFSRITAIEQSPALDVVAIGLENGTVIIFNLKF--DKILMSFKQDWGRVTSLSFRTD-GNPLLASGRSNGDMAFWDL  274 (910)
T ss_pred             ecccccceeEeccCCcceEEEEeccCceEEEEEccc--CcEEEEEEccccceeEEEeccC-CCeeEEeccCCceEEEEEc
Confidence            667888999998888889999999999999999965  4567777633489999999754 2457899999999999999


Q ss_pred             CCCCceeEEEEecCCCCCeeEEEecCCCCCcEEEEEecCCcEEEEEecC-CCCeeeeeecccCCCCeEEEEeCCC-C---
Q 022111           87 GNQNDWTQAHTFNDHKSSVNSIAWAPHELGLSLACGSSDGNISVFTATA-DGGWDTTRIDQAHPVGVTSVSWAPA-M---  161 (302)
Q Consensus        87 ~~~~~~~~~~~~~~h~~~i~~l~~~pd~~~~~l~sg~~d~~v~~~~~~~-~~~~~~~~~~~~h~~~v~~~~~~~~-~---  161 (302)
                      +....  .......|.+.|..+.|.|.++  .+.+.+.|+.+++|-..+ ++.-.+.+.+.+|..+-.++.|.-. +   
T Consensus       275 e~kkl--~~v~~nah~~sv~~~~fl~~ep--Vl~ta~~DnSlk~~vfD~~dg~pR~LR~R~GHs~Pp~~irfy~~~g~~i  350 (910)
T KOG1539|consen  275 EKKKL--INVTRNAHYGSVTGATFLPGEP--VLVTAGADNSLKVWVFDSGDGVPRLLRSRGGHSAPPSCIRFYGSQGHFI  350 (910)
T ss_pred             CCCee--eeeeeccccCCcccceecCCCc--eEeeccCCCceeEEEeeCCCCcchheeeccCCCCCchheeeeccCcEEE
Confidence            76532  2233446888999999988754  899999999999884432 1111222333355554444443210 0   


Q ss_pred             ----C-----------------CCc-------------------------------------------------------
Q 022111          162 ----A-----------------PGA-------------------------------------------------------  165 (302)
Q Consensus       162 ----~-----------------~~~-------------------------------------------------------  165 (302)
                          .                 .+.                                                       
T Consensus       351 lsa~~Drt~r~fs~~~e~~~~~l~~~~~~~~~kk~~~~~~~~~k~p~i~~fa~~~~RE~~W~Nv~~~h~~~~~~~tW~~~  430 (910)
T KOG1539|consen  351 LSAKQDRTLRSFSVISESQSQELGQLHNKKRAKKVNVFSTEKLKLPPIVEFAFENAREKEWDNVITAHKGKRSAYTWNFR  430 (910)
T ss_pred             EecccCcchhhhhhhHHHHhHhhcccccccccccccccchhhhcCCcceeeecccchhhhhcceeEEecCcceEEEEecc
Confidence                0                 000                                                       


Q ss_pred             --------------------eeecccCCCceeEEEeeCCCcEEEEEEecCccccccccccccCCCceeEEEeeCCCCCCc
Q 022111          166 --------------------LVGLGLLDPVQKLASCGCDNTVKVWKMYNGIWKMDCFPALQMHSDWVRSVAWAPNLGLPK  225 (302)
Q Consensus       166 --------------------~~~~~~~~~~~~l~s~~~D~~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~  225 (302)
                                          +.++..+.=|.+.+.|...|.|-+|++.++.-. ..+..-..|+..|..++...-    +
T Consensus       431 n~~~G~~~L~~~~~~~~~~~~~av~vs~CGNF~~IG~S~G~Id~fNmQSGi~r-~sf~~~~ah~~~V~gla~D~~----n  505 (910)
T KOG1539|consen  431 NKTSGRHVLDPKRFKKDDINATAVCVSFCGNFVFIGYSKGTIDRFNMQSGIHR-KSFGDSPAHKGEVTGLAVDGT----N  505 (910)
T ss_pred             CcccccEEecCccccccCcceEEEEEeccCceEEEeccCCeEEEEEcccCeee-cccccCccccCceeEEEecCC----C
Confidence                                000000001334555555667777777665211 111112479999999987543    3


Q ss_pred             cEEEEEecCCeEEEEEeccCCc--ce-------------------------e-----------eeeeccCCCcEEEEEEc
Q 022111          226 STIASASQDGTVVIWTCAKEGE--QW-------------------------E-----------GRVLKDFKTPVWSVSWS  267 (302)
Q Consensus       226 ~~l~s~s~D~~i~iwd~~~~~~--~~-------------------------~-----------~~~~~~~~~~v~~~~~s  267 (302)
                      +.++|++.+|.++.||......  .+                         .           .+...+|.+.|.+++||
T Consensus       506 ~~~vsa~~~Gilkfw~f~~k~l~~~l~l~~~~~~iv~hr~s~l~a~~~ddf~I~vvD~~t~kvvR~f~gh~nritd~~FS  585 (910)
T KOG1539|consen  506 RLLVSAGADGILKFWDFKKKVLKKSLRLGSSITGIVYHRVSDLLAIALDDFSIRVVDVVTRKVVREFWGHGNRITDMTFS  585 (910)
T ss_pred             ceEEEccCcceEEEEecCCcceeeeeccCCCcceeeeeehhhhhhhhcCceeEEEEEchhhhhhHHhhccccceeeeEeC
Confidence            7899999999999999865310  00                         0           00123567889999999


Q ss_pred             cCCCEEEEecCC-ceEEeeecCCceEEEeeecCC
Q 022111          268 LTGNLLAVADAN-NVTLWKEAVDGEWQQVSVVEP  300 (302)
Q Consensus       268 pdg~~la~~~~d-~i~~w~~~~~~~~~~~~~~~~  300 (302)
                      |||+.|++++.| +|++||...+.......+-.|
T Consensus       586 ~DgrWlisasmD~tIr~wDlpt~~lID~~~vd~~  619 (910)
T KOG1539|consen  586 PDGRWLISASMDSTIRTWDLPTGTLIDGLLVDSP  619 (910)
T ss_pred             CCCcEEEEeecCCcEEEEeccCcceeeeEecCCc
Confidence            999999999999 799999987666555544433

>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]

Probab=99.77  E-value=1.3e-17  Score=133.55  Aligned_cols=255  Identities=18%  Similarity=0.201  Sum_probs=174.7

Q ss_pred             ccccccccceeEEEEccCCCEEEEeeCCCcEEEEeecCCCceEEEEec-CcccCeEEEEeeCCCCCCEEEEEeCCCeEEE
Q 022111            5 KIETGHEDTVHDVAMDFYGKRLATASSDSSIKIIGLSNSASQHLATLK-GHRGPVWQVAWAHPKFGSILASCSYDGQVII   83 (302)
Q Consensus         5 ~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~lw~~~~~~~~~~~~~~-~h~~~v~~v~~~~~~~~~~l~s~s~D~~i~i   83 (302)
                      .++.+|...|+++.|..++ +|.+|..-|.|++|++.+...  ...+. .|...|+.+.-.+   +..|.+-+.|..+.+
T Consensus         8 fvLRp~~~~v~s~~fqa~~-rL~sg~~~G~V~~w~lqt~r~--~~~~r~~g~~~it~lq~~p---~d~l~tqgRd~~L~l   81 (323)
T KOG0322|consen    8 FVLRPHSSSVTSVLFQANE-RLMSGLSVGIVKMWVLQTERD--LPLIRLFGRLFITNLQSIP---NDSLDTQGRDPLLIL   81 (323)
T ss_pred             eEeccccchheehhhccch-hhhcccccceEEEEEeecCcc--chhhhhhccceeeceeecC---CcchhhcCCCceEEE
Confidence            3456899999999999877 488999999999999976432  33444 4677788887543   357889999999999


Q ss_pred             EEcCCCCc--------------------------e--------------------eEEE----EecCCCCCeeEEEecCC
Q 022111           84 WKEGNQND--------------------------W--------------------TQAH----TFNDHKSSVNSIAWAPH  113 (302)
Q Consensus        84 wd~~~~~~--------------------------~--------------------~~~~----~~~~h~~~i~~l~~~pd  113 (302)
                      |++....-                          +                    +.+.    .-....+.+.|..+--+
T Consensus        82 w~ia~s~~i~i~Si~~nslgFCrfSl~~~~k~~eqll~yp~rgsde~h~~D~g~~tqv~i~dd~~~~Klgsvmc~~~~~~  161 (323)
T KOG0322|consen   82 WTIAYSAFISIHSIVVNSLGFCRFSLVKKPKNSEQLLEYPSRGSDETHKQDGGDTTQVQIADDSERSKLGSVMCQDKDHA  161 (323)
T ss_pred             EEccCcceEEEeeeeccccccccceeccCCCcchhheecCCcccchhhhhccCccceeEccCchhccccCceeeeecccc
Confidence            98754110                          0                    0000    00112356666665433


Q ss_pred             C-CCcEEEEEecCCcEEEEEecCCCC-------eeeeeecccCCCCeEEEEeCCCCCCCceeecccCCCceeEEEeeCCC
Q 022111          114 E-LGLSLACGSSDGNISVFTATADGG-------WDTTRIDQAHPVGVTSVSWAPAMAPGALVGLGLLDPVQKLASCGCDN  185 (302)
Q Consensus       114 ~-~~~~l~sg~~d~~v~~~~~~~~~~-------~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~D~  185 (302)
                      . ....+++|-.+|.+.+||++.+..       +........|..+|.++.+.+..              ..=++|+.+.
T Consensus       162 c~s~~lllaGyEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvlsldyas~~--------------~rGisgga~d  227 (323)
T KOG0322|consen  162 CGSTFLLLAGYESGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQPVLSLDYASSC--------------DRGISGGADD  227 (323)
T ss_pred             ccceEEEEEeccCCeEEEEEccCCceeeccccccccccchhhccCcceeeeechhh--------------cCCcCCCccc
Confidence            2 223577888899999999986421       11111123578889999887643              2236777788


Q ss_pred             cEEEEEEecCccccccccccccCCCceeEEEeeCCCCCCccEEEEEecCCeEEEEEeccCCcceeeeeeccCCCcEEEEE
Q 022111          186 TVKVWKMYNGIWKMDCFPALQMHSDWVRSVAWAPNLGLPKSTIASASQDGTVVIWTCAKEGEQWEGRVLKDFKTPVWSVS  265 (302)
Q Consensus       186 ~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~  265 (302)
                      .+..|.+....-.+..-.+..--.-.|..+..-||+    +.+||++.|+.||||..++...   ..+++-|+..|.+++
T Consensus       228 kl~~~Sl~~s~gslq~~~e~~lknpGv~gvrIRpD~----KIlATAGWD~RiRVyswrtl~p---LAVLkyHsagvn~vA  300 (323)
T KOG0322|consen  228 KLVMYSLNHSTGSLQIRKEITLKNPGVSGVRIRPDG----KILATAGWDHRIRVYSWRTLNP---LAVLKYHSAGVNAVA  300 (323)
T ss_pred             cceeeeeccccCcccccceEEecCCCccceEEccCC----cEEeecccCCcEEEEEeccCCc---hhhhhhhhcceeEEE
Confidence            888888764311111111112223447778888885    7899999999999999987532   245677889999999


Q ss_pred             EccCCCEEEEecCC-ceEEeee
Q 022111          266 WSLTGNLLAVADAN-NVTLWKE  286 (302)
Q Consensus       266 ~spdg~~la~~~~d-~i~~w~~  286 (302)
                      |+||..++|+|+.| .|-+|+.
T Consensus       301 fspd~~lmAaaskD~rISLWkL  322 (323)
T KOG0322|consen  301 FSPDCELMAAASKDARISLWKL  322 (323)
T ss_pred             eCCCCchhhhccCCceEEeeec
Confidence            99999999999999 7999984

>KOG4227 consensus WD40 repeat protein [General function prediction only]

Probab=99.77  E-value=9.3e-17  Score=135.11  Aligned_cols=254  Identities=15%  Similarity=0.224  Sum_probs=175.6

Q ss_pred             ccccccceeEEEEccCCCEEEEeeCCCcEEEEeecC----CCceEEEEecC-cccCeEEEEeeCCCCCCEEEEEeCCCeE
Q 022111            7 ETGHEDTVHDVAMDFYGKRLATASSDSSIKIIGLSN----SASQHLATLKG-HRGPVWQVAWAHPKFGSILASCSYDGQV   81 (302)
Q Consensus         7 ~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~lw~~~~----~~~~~~~~~~~-h~~~v~~v~~~~~~~~~~l~s~s~D~~i   81 (302)
                      ..+|.+-|+.+-|+-++++||+||.|..+++|.++.    ...+++..... |...|.+++|..  ..+.|.+|+.+++|
T Consensus        52 ~~~H~GCiNAlqFS~N~~~L~SGGDD~~~~~W~~de~~~~k~~KPI~~~~~~H~SNIF~L~F~~--~N~~~~SG~~~~~V  129 (609)
T KOG4227|consen   52 VREHTGCINALQFSHNDRFLASGGDDMHGRVWNVDELMVRKTPKPIGVMEHPHRSNIFSLEFDL--ENRFLYSGERWGTV  129 (609)
T ss_pred             hhhhccccceeeeccCCeEEeecCCcceeeeechHHHHhhcCCCCceeccCccccceEEEEEcc--CCeeEecCCCccee
Confidence            458999999999999999999999999999999842    22345554432 557899999964  35789999999999


Q ss_pred             EEEEcCCCCceeEEEEecCCC---CCeeEEEecCCCCCcEEEEEecCCcEEEEEecCCC-CeeeeeecccCCCCeEEEEe
Q 022111           82 IIWKEGNQNDWTQAHTFNDHK---SSVNSIAWAPHELGLSLACGSSDGNISVFTATADG-GWDTTRIDQAHPVGVTSVSW  157 (302)
Q Consensus        82 ~iwd~~~~~~~~~~~~~~~h~---~~i~~l~~~pd~~~~~l~sg~~d~~v~~~~~~~~~-~~~~~~~~~~h~~~v~~~~~  157 (302)
                      .+-|+++..   .+..+. |+   +.|..+..+|.+  ..+++.+.++.|.+||.+... ...+..+ ...+....++.|
T Consensus       130 I~HDiEt~q---si~V~~-~~~~~~~VY~m~~~P~D--N~~~~~t~~~~V~~~D~Rd~~~~~~~~~~-AN~~~~F~t~~F  202 (609)
T KOG4227|consen  130 IKHDIETKQ---SIYVAN-ENNNRGDVYHMDQHPTD--NTLIVVTRAKLVSFIDNRDRQNPISLVLP-ANSGKNFYTAEF  202 (609)
T ss_pred             Eeeecccce---eeeeec-ccCcccceeecccCCCC--ceEEEEecCceEEEEeccCCCCCCceeee-cCCCccceeeee
Confidence            999998753   344443 44   489999999984  489999999999999998532 2221111 122334556677


Q ss_pred             CCCCCCCceeecccCCCceeEEEeeCCCcEEEEEEecCccc----------------------------c------cc--
Q 022111          158 APAMAPGALVGLGLLDPVQKLASCGCDNTVKVWKMYNGIWK----------------------------M------DC--  201 (302)
Q Consensus       158 ~~~~~~~~~~~~~~~~~~~~l~s~~~D~~v~iwd~~~~~~~----------------------------~------~~--  201 (302)
                      .|-.             ..+|++.+..+-+.+||.+.....                            +      .|  
T Consensus       203 ~P~~-------------P~Li~~~~~~~G~~~~D~R~~~~~~~~~~~~~~L~~~~~~~M~~~~~~~G~Q~msiRR~~~P~  269 (609)
T KOG4227|consen  203 HPET-------------PALILVNSETGGPNVFDRRMQARPVYQRSMFKGLPQENTEWMGSLWSPSGNQFMSIRRGKCPL  269 (609)
T ss_pred             cCCC-------------ceeEEeccccCCCCceeeccccchHHhhhccccCcccchhhhheeeCCCCCeehhhhccCCCE
Confidence            7754             267888888888999997542100                            0      00  


Q ss_pred             c--------cccc-cCC-------CceeEEEeeCCCCCCccEEEEEecCCeEEEEEeccCCcc-----------------
Q 022111          202 F--------PALQ-MHS-------DWVRSVAWAPNLGLPKSTIASASQDGTVVIWTCAKEGEQ-----------------  248 (302)
Q Consensus       202 ~--------~~~~-~h~-------~~v~~v~~~p~~~~~~~~l~s~s~D~~i~iwd~~~~~~~-----------------  248 (302)
                      +        ..|+ .|.       ..+.+++|.-|     ..+++||++-.|.+|.+-.....                 
T Consensus       270 ~~D~~S~R~~V~k~D~N~~GY~N~~T~KS~~F~~D-----~~v~tGSD~~~i~~WklP~~~ds~G~~~IG~~~~~~~~~~  344 (609)
T KOG4227|consen  270 YFDFISQRCFVLKSDHNPNGYCNIKTIKSMTFIDD-----YTVATGSDHWGIHIWKLPRANDSYGFTQIGHDEEEMPSEI  344 (609)
T ss_pred             EeeeecccceeEeccCCCCcceeeeeeeeeeeecc-----eeeeccCcccceEEEecCCCccccCccccCcchhhCchhh
Confidence            0        0011 121       23566667644     56999999999999997432100                 


Q ss_pred             e---eeeeeccCCCcEEEEEEccCCCEEEEecCC-ceEEeeec
Q 022111          249 W---EGRVLKDFKTPVWSVSWSLTGNLLAVADAN-NVTLWKEA  287 (302)
Q Consensus       249 ~---~~~~~~~~~~~v~~~~~spdg~~la~~~~d-~i~~w~~~  287 (302)
                      .   ...++++|..-+..+.|+|...+|++.+-. .++||...
T Consensus       345 ~i~~~~~VLrGHRSv~NQVRF~~H~~~l~SSGVE~~~KlWS~~  387 (609)
T KOG4227|consen  345 FIEKELTVLRGHRSVPNQVRFSQHNNLLVSSGVENSFKLWSDH  387 (609)
T ss_pred             eecceeEEEecccccccceeecCCcceEeccchhhheeccccc
Confidence            0   012356788888999999988877666555 79999753

>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein

Probab=99.77  E-value=1.3e-15  Score=130.97  Aligned_cols=225  Identities=13%  Similarity=0.129  Sum_probs=145.2

Q ss_pred             CEEEEeeCCCcEEEEeecCCCceEEEEecCcccCeEEEEeeCCCCCCEE-EEEeCCCeEEEEEcCCCCceeEEEEecCCC
Q 022111           24 KRLATASSDSSIKIIGLSNSASQHLATLKGHRGPVWQVAWAHPKFGSIL-ASCSYDGQVIIWKEGNQNDWTQAHTFNDHK  102 (302)
Q Consensus        24 ~~l~s~~~d~~v~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l-~s~s~D~~i~iwd~~~~~~~~~~~~~~~h~  102 (302)
                      +.++|++.|+.+++||..+.  +.+..+..|.. +..++|+++  ++.+ ++++.++.+++||..+..   ....+..+.
T Consensus         2 ~~~~s~~~d~~v~~~d~~t~--~~~~~~~~~~~-~~~l~~~~d--g~~l~~~~~~~~~v~~~d~~~~~---~~~~~~~~~   73 (300)
T TIGR03866         2 KAYVSNEKDNTISVIDTATL--EVTRTFPVGQR-PRGITLSKD--GKLLYVCASDSDTIQVIDLATGE---VIGTLPSGP   73 (300)
T ss_pred             cEEEEecCCCEEEEEECCCC--ceEEEEECCCC-CCceEECCC--CCEEEEEECCCCeEEEEECCCCc---EEEeccCCC
Confidence            57889999999999998653  35566665543 677999764  6655 677889999999987653   334444443


Q ss_pred             CCeeEEEecCCCCCcEE-EEEecCCcEEEEEecCCCCeeeeeecccCCCCeEEEEeCCCCCCCceeecccCCCceeEEEe
Q 022111          103 SSVNSIAWAPHELGLSL-ACGSSDGNISVFTATADGGWDTTRIDQAHPVGVTSVSWAPAMAPGALVGLGLLDPVQKLASC  181 (302)
Q Consensus       103 ~~i~~l~~~pd~~~~~l-~sg~~d~~v~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~s~  181 (302)
                      . +..++|+|+  +..+ ++++.++.+++||+.....  ...+.  +...+.+++|+|++              ..++++
T Consensus        74 ~-~~~~~~~~~--g~~l~~~~~~~~~l~~~d~~~~~~--~~~~~--~~~~~~~~~~~~dg--------------~~l~~~  132 (300)
T TIGR03866        74 D-PELFALHPN--GKILYIANEDDNLVTVIDIETRKV--LAEIP--VGVEPEGMAVSPDG--------------KIVVNT  132 (300)
T ss_pred             C-ccEEEECCC--CCEEEEEcCCCCeEEEEECCCCeE--EeEee--CCCCcceEEECCCC--------------CEEEEE
Confidence            3 567889998  4444 5556789999999875321  22222  22335678888864              677777


Q ss_pred             eCCC-cEEEEEEecCccccccccccccCCCceeEEEeeCCCCCCccEE-EEEecCCeEEEEEeccCCcceeeeee-c--c
Q 022111          182 GCDN-TVKVWKMYNGIWKMDCFPALQMHSDWVRSVAWAPNLGLPKSTI-ASASQDGTVVIWTCAKEGEQWEGRVL-K--D  256 (302)
Q Consensus       182 ~~D~-~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~l-~s~s~D~~i~iwd~~~~~~~~~~~~~-~--~  256 (302)
                      +.++ .+.+||..+...    .... .....+.+++|+|++    ..| +++..++.|++||++.....  ..+. .  +
T Consensus       133 ~~~~~~~~~~d~~~~~~----~~~~-~~~~~~~~~~~s~dg----~~l~~~~~~~~~v~i~d~~~~~~~--~~~~~~~~~  201 (300)
T TIGR03866       133 SETTNMAHFIDTKTYEI----VDNV-LVDQRPRFAEFTADG----KELWVSSEIGGTVSVIDVATRKVI--KKITFEIPG  201 (300)
T ss_pred             ecCCCeEEEEeCCCCeE----EEEE-EcCCCccEEEECCCC----CEEEEEcCCCCEEEEEEcCcceee--eeeeecccc
Confidence            7664 567788865421    1111 122345789999996    455 55567999999999754211  1111 0  0


Q ss_pred             -C--CCcEEEEEEccCCCEEEEe--cCCceEEeeecC
Q 022111          257 -F--KTPVWSVSWSLTGNLLAVA--DANNVTLWKEAV  288 (302)
Q Consensus       257 -~--~~~v~~~~~spdg~~la~~--~~d~i~~w~~~~  288 (302)
                       .  ......++|+|+|+++.++  +.+.+.+|+...
T Consensus       202 ~~~~~~~~~~i~~s~dg~~~~~~~~~~~~i~v~d~~~  238 (300)
T TIGR03866       202 VHPEAVQPVGIKLTKDGKTAFVALGPANRVAVVDAKT  238 (300)
T ss_pred             cccccCCccceEECCCCCEEEEEcCCCCeEEEEECCC
Confidence             0  1123468999999986544  334799999753

Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.

>KOG1273 consensus WD40 repeat protein [General function prediction only]

Probab=99.76  E-value=7.8e-17  Score=132.05  Aligned_cols=211  Identities=15%  Similarity=0.271  Sum_probs=148.2

Q ss_pred             eEEEEeeCCCCCCEEEEEeCCCeEEEEEcCCCCceeEEEEecCCCCCeeEEEecCCCCCcEEEEEecCCcEEEEEecCCC
Q 022111           58 VWQVAWAHPKFGSILASCSYDGQVIIWKEGNQNDWTQAHTFNDHKSSVNSIAWAPHELGLSLACGSSDGNISVFTATADG  137 (302)
Q Consensus        58 v~~v~~~~~~~~~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~h~~~i~~l~~~pd~~~~~l~sg~~d~~v~~~~~~~~~  137 (302)
                      ..++.|++.  |.+||.|+.||.+.|||+.+.+   ...++.+|..+|.+++||+|  |..|+|+|.|..|++||+..+.
T Consensus        26 a~~~~Fs~~--G~~lAvGc~nG~vvI~D~~T~~---iar~lsaH~~pi~sl~WS~d--gr~LltsS~D~si~lwDl~~gs   98 (405)
T KOG1273|consen   26 AECCQFSRW--GDYLAVGCANGRVVIYDFDTFR---IARMLSAHVRPITSLCWSRD--GRKLLTSSRDWSIKLWDLLKGS   98 (405)
T ss_pred             cceEEeccC--cceeeeeccCCcEEEEEccccc---hhhhhhccccceeEEEecCC--CCEeeeecCCceeEEEeccCCC
Confidence            578999864  8999999999999999997653   45678899999999999999  7799999999999999998765


Q ss_pred             CeeeeeecccCCCCeEEEEeCCCCCCC--------------------ceee------c------c-cCCCceeEEEeeCC
Q 022111          138 GWDTTRIDQAHPVGVTSVSWAPAMAPG--------------------ALVG------L------G-LLDPVQKLASCGCD  184 (302)
Q Consensus       138 ~~~~~~~~~~h~~~v~~~~~~~~~~~~--------------------~~~~------~------~-~~~~~~~l~s~~~D  184 (302)
                      ......+    ..+|..+.|.|.....                    .++.      +      + +...|+++++|...
T Consensus        99 ~l~rirf----~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~~h~~Lp~d~d~dln~sas~~~fdr~g~yIitGtsK  174 (405)
T KOG1273|consen   99 PLKRIRF----DSPVWGAQWHPRKRNKCVATIMEESPVVIDFSDPKHSVLPKDDDGDLNSSASHGVFDRRGKYIITGTSK  174 (405)
T ss_pred             ceeEEEc----cCccceeeeccccCCeEEEEEecCCcEEEEecCCceeeccCCCccccccccccccccCCCCEEEEecCc
Confidence            4322222    3345555555532110                    0000      0      0 11237889999999


Q ss_pred             CcEEEEEEecCccccccccccccCC-CceeEEEeeCCCCCCccEEEEEecCCeEEEEEeccCCcc-eeeeeeccC-----
Q 022111          185 NTVKVWKMYNGIWKMDCFPALQMHS-DWVRSVAWAPNLGLPKSTIASASQDGTVVIWTCAKEGEQ-WEGRVLKDF-----  257 (302)
Q Consensus       185 ~~v~iwd~~~~~~~~~~~~~~~~h~-~~v~~v~~~p~~~~~~~~l~s~s~D~~i~iwd~~~~~~~-~~~~~~~~~-----  257 (302)
                      |.+.++|..+.    +|+..+..-. ..|..+.++..+    ..|+.-+.|+.||.++++.-... ..+..-..+     
T Consensus       175 Gkllv~~a~t~----e~vas~rits~~~IK~I~~s~~g----~~liiNtsDRvIR~ye~~di~~~~r~~e~e~~~K~qDv  246 (405)
T KOG1273|consen  175 GKLLVYDAETL----ECVASFRITSVQAIKQIIVSRKG----RFLIINTSDRVIRTYEISDIDDEGRDGEVEPEHKLQDV  246 (405)
T ss_pred             ceEEEEecchh----eeeeeeeechheeeeEEEEeccC----cEEEEecCCceEEEEehhhhcccCccCCcChhHHHHHH
Confidence            99999998764    4555554433 678899998774    88999999999999998742111 000110011     


Q ss_pred             --CCcEEEEEEccCCCEEEEecCC--ceEEeeec
Q 022111          258 --KTPVWSVSWSLTGNLLAVADAN--NVTLWKEA  287 (302)
Q Consensus       258 --~~~v~~~~~spdg~~la~~~~d--~i~~w~~~  287 (302)
                        +.+=..+.||-||.|+.+++..  .+.||...
T Consensus       247 VNk~~Wk~ccfs~dgeYv~a~s~~aHaLYIWE~~  280 (405)
T KOG1273|consen  247 VNKLQWKKCCFSGDGEYVCAGSARAHALYIWEKS  280 (405)
T ss_pred             HhhhhhhheeecCCccEEEeccccceeEEEEecC
Confidence              1122368899999999887765  59999854

>PRK11028 6-phosphogluconolactonase; Provisional

Probab=99.76  E-value=5.6e-15  Score=129.52  Aligned_cols=262  Identities=14%  Similarity=0.217  Sum_probs=157.2

Q ss_pred             cceeEEEEccCCCEEEEee-CCCcEEEEeecC-CCceEEEEecCcccCeEEEEeeCCCCCCEEEEEe-CCCeEEEEEcCC
Q 022111           12 DTVHDVAMDFYGKRLATAS-SDSSIKIIGLSN-SASQHLATLKGHRGPVWQVAWAHPKFGSILASCS-YDGQVIIWKEGN   88 (302)
Q Consensus        12 ~~v~~~~~s~~~~~l~s~~-~d~~v~lw~~~~-~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~s-~D~~i~iwd~~~   88 (302)
                      .....++++|++++|++++ .++.|.+|++.. +....+.... ..+....+.|+++  +++|++++ .++.+.+|+++.
T Consensus        35 ~~~~~l~~spd~~~lyv~~~~~~~i~~~~~~~~g~l~~~~~~~-~~~~p~~i~~~~~--g~~l~v~~~~~~~v~v~~~~~  111 (330)
T PRK11028         35 GQVQPMVISPDKRHLYVGVRPEFRVLSYRIADDGALTFAAESP-LPGSPTHISTDHQ--GRFLFSASYNANCVSVSPLDK  111 (330)
T ss_pred             CCCccEEECCCCCEEEEEECCCCcEEEEEECCCCceEEeeeec-CCCCceEEEECCC--CCEEEEEEcCCCeEEEEEECC
Confidence            4456688999999887665 578899999863 2222222222 2234567888764  67776665 488999999864


Q ss_pred             CCc-eeEEEEecCCCCCeeEEEecCCCCCcEE-EEEecCCcEEEEEecCCCCeee---eeecccCCCCeEEEEeCCCCCC
Q 022111           89 QND-WTQAHTFNDHKSSVNSIAWAPHELGLSL-ACGSSDGNISVFTATADGGWDT---TRIDQAHPVGVTSVSWAPAMAP  163 (302)
Q Consensus        89 ~~~-~~~~~~~~~h~~~i~~l~~~pd~~~~~l-~sg~~d~~v~~~~~~~~~~~~~---~~~~~~h~~~v~~~~~~~~~~~  163 (302)
                      ... ......+. +......++++|+  +.++ ++...++.|.+||+.+.+....   .............+.|+|++  
T Consensus       112 ~g~~~~~~~~~~-~~~~~~~~~~~p~--g~~l~v~~~~~~~v~v~d~~~~g~l~~~~~~~~~~~~g~~p~~~~~~pdg--  186 (330)
T PRK11028        112 DGIPVAPIQIIE-GLEGCHSANIDPD--NRTLWVPCLKEDRIRLFTLSDDGHLVAQEPAEVTTVEGAGPRHMVFHPNQ--  186 (330)
T ss_pred             CCCCCCceeecc-CCCcccEeEeCCC--CCEEEEeeCCCCEEEEEEECCCCcccccCCCceecCCCCCCceEEECCCC--
Confidence            221 12223332 2234567889998  4455 5666779999999975432211   00010112234567787753  


Q ss_pred             CceeecccCCCceeEEEeeC-CCcEEEEEEecCcccccccccccc------CCCceeEEEeeCCCCCCccEEEEEe-cCC
Q 022111          164 GALVGLGLLDPVQKLASCGC-DNTVKVWKMYNGIWKMDCFPALQM------HSDWVRSVAWAPNLGLPKSTIASAS-QDG  235 (302)
Q Consensus       164 ~~~~~~~~~~~~~~l~s~~~-D~~v~iwd~~~~~~~~~~~~~~~~------h~~~v~~v~~~p~~~~~~~~l~s~s-~D~  235 (302)
                                  ++++++.. ++.|.+||+......++....+..      +..+...+.++|++    +++.++. .++
T Consensus       187 ------------~~lyv~~~~~~~v~v~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~i~~~pdg----~~lyv~~~~~~  250 (330)
T PRK11028        187 ------------QYAYCVNELNSSVDVWQLKDPHGEIECVQTLDMMPADFSDTRWAADIHITPDG----RHLYACDRTAS  250 (330)
T ss_pred             ------------CEEEEEecCCCEEEEEEEeCCCCCEEEEEEEecCCCcCCCCccceeEEECCCC----CEEEEecCCCC
Confidence                        56655544 899999999742111122222211      22344578999986    5566664 578


Q ss_pred             eEEEEEeccCCcceeeeeeccCCCcEEEEEEccCCCEEEEecC-C-ceEEeeec-CCceEEEeee
Q 022111          236 TVVIWTCAKEGEQWEGRVLKDFKTPVWSVSWSLTGNLLAVADA-N-NVTLWKEA-VDGEWQQVSV  297 (302)
Q Consensus       236 ~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~la~~~~-d-~i~~w~~~-~~~~~~~~~~  297 (302)
                      .|.+|++..........-...-....+.++|+|||++|+++.. + .|.+|+.. ..|.+.....
T Consensus       251 ~I~v~~i~~~~~~~~~~~~~~~~~~p~~~~~~~dg~~l~va~~~~~~v~v~~~~~~~g~l~~~~~  315 (330)
T PRK11028        251 LISVFSVSEDGSVLSFEGHQPTETQPRGFNIDHSGKYLIAAGQKSHHISVYEIDGETGLLTELGR  315 (330)
T ss_pred             eEEEEEEeCCCCeEEEeEEEeccccCCceEECCCCCEEEEEEccCCcEEEEEEcCCCCcEEEccc
Confidence            9999999654321110000011124567899999999998875 3 79999874 3455655444

>KOG1188 consensus WD40 repeat protein [General function prediction only]

Probab=99.75  E-value=1.4e-16  Score=131.71  Aligned_cols=198  Identities=18%  Similarity=0.278  Sum_probs=148.6

Q ss_pred             CEEEEeeCCCcEEEEeecCCCceEEEEecCcccCeEEEEeeCCCCCCEEEEEeCCCeEEEEEcCCCCceeEEEEecCCC-
Q 022111           24 KRLATASSDSSIKIIGLSNSASQHLATLKGHRGPVWQVAWAHPKFGSILASCSYDGQVIIWKEGNQNDWTQAHTFNDHK-  102 (302)
Q Consensus        24 ~~l~s~~~d~~v~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~h~-  102 (302)
                      ..+|++-..|.|+|||..+  +..+..+++|.+.+..++|.....++.+.+|+.||+||+||++..... ....++.|. 
T Consensus        41 ~~vav~lSngsv~lyd~~t--g~~l~~fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~-a~~~~~~~~~  117 (376)
T KOG1188|consen   41 TAVAVSLSNGSVRLYDKGT--GQLLEEFKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAES-ARISWTQQSG  117 (376)
T ss_pred             eeEEEEecCCeEEEEeccc--hhhhheecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhh-hheeccCCCC
Confidence            4578888899999999865  456778999999999999986545778999999999999999876432 333455555 


Q ss_pred             CCeeEEEecCCCCCcEEEEEe----cCCcEEEEEecCCCCeeeeeecccCCCCeEEEEeCCCCCCCceeecccCCCceeE
Q 022111          103 SSVNSIAWAPHELGLSLACGS----SDGNISVFTATADGGWDTTRIDQAHPVGVTSVSWAPAMAPGALVGLGLLDPVQKL  178 (302)
Q Consensus       103 ~~i~~l~~~pd~~~~~l~sg~----~d~~v~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~l  178 (302)
                      .+..+++.+-.  +.++++|.    .+-.|.+||++.... .+..+...|...|+++.|.|..             ...|
T Consensus       118 ~~f~~ld~nck--~~ii~~GtE~~~s~A~v~lwDvR~~qq-~l~~~~eSH~DDVT~lrFHP~~-------------pnlL  181 (376)
T KOG1188|consen  118 TPFICLDLNCK--KNIIACGTELTRSDASVVLWDVRSEQQ-LLRQLNESHNDDVTQLRFHPSD-------------PNLL  181 (376)
T ss_pred             CcceEeeccCc--CCeEEeccccccCceEEEEEEeccccc-hhhhhhhhccCcceeEEecCCC-------------CCeE
Confidence            45567766532  44677664    356888999986432 2344455899999999999964             3789


Q ss_pred             EEeeCCCcEEEEEEecCccccccccccccCCCceeEEEeeCCCCCCccEEEEEecCCeEEEEEecc
Q 022111          179 ASCGCDNTVKVWKMYNGIWKMDCFPALQMHSDWVRSVAWAPNLGLPKSTIASASQDGTVVIWTCAK  244 (302)
Q Consensus       179 ~s~~~D~~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~l~s~s~D~~i~iwd~~~  244 (302)
                      +|||.||.|.|||++...-. +.+.....|...|.++.|.-++   .+.|.+-+...+..+|++..
T Consensus       182 lSGSvDGLvnlfD~~~d~Ee-DaL~~viN~~sSI~~igw~~~~---ykrI~clTH~Etf~~~ele~  243 (376)
T KOG1188|consen  182 LSGSVDGLVNLFDTKKDNEE-DALLHVINHGSSIHLIGWLSKK---YKRIMCLTHMETFAIYELED  243 (376)
T ss_pred             EeecccceEEeeecCCCcch-hhHHHhhcccceeeeeeeecCC---cceEEEEEccCceeEEEccC
Confidence            99999999999999754211 2233334577889999998764   35799999999999999865

>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]

Probab=99.74  E-value=3.7e-16  Score=126.77  Aligned_cols=206  Identities=16%  Similarity=0.230  Sum_probs=147.3

Q ss_pred             ccccccceeEEEEcc-CCCEEEEeeCCCcEEEEeecCC-CceEEEEecCcccCeEEEEeeCCCCCCEEEEEeCCCeEEEE
Q 022111            7 ETGHEDTVHDVAMDF-YGKRLATASSDSSIKIIGLSNS-ASQHLATLKGHRGPVWQVAWAHPKFGSILASCSYDGQVIIW   84 (302)
Q Consensus         7 ~~~h~~~v~~~~~s~-~~~~l~s~~~d~~v~lw~~~~~-~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~s~D~~i~iw   84 (302)
                      ...+..+++++.|+. +-+++.+++.|.++.|||++.+ .+....+|-+|..+|..|+|... .-+++||+|+||.+|++
T Consensus       146 ns~~~aPlTSFDWne~dp~~igtSSiDTTCTiWdie~~~~~~vkTQLIAHDKEV~DIaf~~~-s~~~FASvgaDGSvRmF  224 (364)
T KOG0290|consen  146 NSEFCAPLTSFDWNEVDPNLIGTSSIDTTCTIWDIETGVSGTVKTQLIAHDKEVYDIAFLKG-SRDVFASVGADGSVRMF  224 (364)
T ss_pred             ccccCCcccccccccCCcceeEeecccCeEEEEEEeeccccceeeEEEecCcceeEEEeccC-ccceEEEecCCCcEEEE
Confidence            345667888888764 5689999999999999999765 33345678899999999999753 24689999999999999


Q ss_pred             EcCCCCceeEEEEecCCCCCeeEEEecCCCCCcEEEEEecC-CcEEEEEecCCCCeeeeeecccCCCCeEEEEeCCCCCC
Q 022111           85 KEGNQNDWTQAHTFNDHKSSVNSIAWAPHELGLSLACGSSD-GNISVFTATADGGWDTTRIDQAHPVGVTSVSWAPAMAP  163 (302)
Q Consensus        85 d~~~~~~~~~~~~~~~h~~~i~~l~~~pd~~~~~l~sg~~d-~~v~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~  163 (302)
                      |++.....+.+..-.....+..-++|++.+. .++|+-..| ..|.+-|++... ....++. .|...|+.++|.|..  
T Consensus       225 DLR~leHSTIIYE~p~~~~pLlRLswnkqDp-nymATf~~dS~~V~iLDiR~P~-tpva~L~-~H~a~VNgIaWaPhS--  299 (364)
T KOG0290|consen  225 DLRSLEHSTIIYEDPSPSTPLLRLSWNKQDP-NYMATFAMDSNKVVILDIRVPC-TPVARLR-NHQASVNGIAWAPHS--  299 (364)
T ss_pred             EecccccceEEecCCCCCCcceeeccCcCCc-hHHhhhhcCCceEEEEEecCCC-cceehhh-cCcccccceEecCCC--
Confidence            9987655444443333356778899998754 456665555 567778887432 2334554 899999999999975  


Q ss_pred             CceeecccCCCceeEEEeeCCCcEEEEEEecCcc-c-cccccccccCCCceeEEEeeCCCCCCccEEEEEec
Q 022111          164 GALVGLGLLDPVQKLASCGCDNTVKVWKMYNGIW-K-MDCFPALQMHSDWVRSVAWAPNLGLPKSTIASASQ  233 (302)
Q Consensus       164 ~~~~~~~~~~~~~~l~s~~~D~~v~iwd~~~~~~-~-~~~~~~~~~h~~~v~~v~~~p~~~~~~~~l~s~s~  233 (302)
                                 ...|.|||.|..+-|||+..-.. . .+.+-.+. -.+.|+.|.|+|..   ++.|+.+..
T Consensus       300 -----------~~hictaGDD~qaliWDl~q~~~~~~~dPilay~-a~~EVNqi~Ws~~~---~Dwiai~~~  356 (364)
T KOG0290|consen  300 -----------SSHICTAGDDCQALIWDLQQMPRENGEDPILAYT-AGGEVNQIQWSSSQ---PDWIAICFG  356 (364)
T ss_pred             -----------CceeeecCCcceEEEEecccccccCCCCchhhhh-ccceeeeeeecccC---CCEEEEEec
Confidence                       36899999999999999975321 0 01111111 34569999999864   466766543

>KOG1310 consensus WD40 repeat protein [General function prediction only]

Probab=99.73  E-value=1.4e-16  Score=139.13  Aligned_cols=219  Identities=21%  Similarity=0.237  Sum_probs=151.6

Q ss_pred             EEecCcccCeEEEEeeCCCCCCEEEEEeCCCeEEEEEcCCCCceeEEEE-ecCCCCCeeEEEecCCCCCcEEEEEecCCc
Q 022111           49 ATLKGHRGPVWQVAWAHPKFGSILASCSYDGQVIIWKEGNQNDWTQAHT-FNDHKSSVNSIAWAPHELGLSLACGSSDGN  127 (302)
Q Consensus        49 ~~~~~h~~~v~~v~~~~~~~~~~l~s~s~D~~i~iwd~~~~~~~~~~~~-~~~h~~~i~~l~~~pd~~~~~l~sg~~d~~  127 (302)
                      ..|.||++-|.++.|+.  +|.+|+|||.|-.+.|||.-..+   +++. -++|...|.++.|-|..+..++++|+.|+.
T Consensus        44 ~eL~GH~GCVN~LeWn~--dG~lL~SGSDD~r~ivWd~~~~K---llhsI~TgHtaNIFsvKFvP~tnnriv~sgAgDk~  118 (758)
T KOG1310|consen   44 AELTGHTGCVNCLEWNA--DGELLASGSDDTRLIVWDPFEYK---LLHSISTGHTANIFSVKFVPYTNNRIVLSGAGDKL  118 (758)
T ss_pred             hhhccccceecceeecC--CCCEEeecCCcceEEeecchhcc---eeeeeecccccceeEEeeeccCCCeEEEeccCcce
Confidence            35789999999999986  49999999999999999986543   3333 358999999999999877789999999999


Q ss_pred             EEEEEecCCCC-------eeeeeecccCCCCeEEEEeCCCCCCCceeecccCCCceeEEEeeCCCcEEEEEEecCccccc
Q 022111          128 ISVFTATADGG-------WDTTRIDQAHPVGVTSVSWAPAMAPGALVGLGLLDPVQKLASCGCDNTVKVWKMYNGIWKMD  200 (302)
Q Consensus       128 v~~~~~~~~~~-------~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~D~~v~iwd~~~~~~~~~  200 (302)
                      |++||+.....       ......-+.|...|..++-.|..             ...+-++++||+++-+|++...   .
T Consensus       119 i~lfdl~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~-------------PhtfwsasEDGtirQyDiREph---~  182 (758)
T KOG1310|consen  119 IKLFDLDSSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNG-------------PHTFWSASEDGTIRQYDIREPH---V  182 (758)
T ss_pred             EEEEecccccccccccCccchhhhhhhhhhhhhheecCCCC-------------CceEEEecCCcceeeecccCCc---c
Confidence            99999874211       11111223466666666655542             2578999999999999998742   1


Q ss_pred             ccccccc-------C--CCceeEEEeeCCCCCCccEEEEEecCCeEEEEEeccCCcc----ee------------eeeec
Q 022111          201 CFPALQM-------H--SDWVRSVAWAPNLGLPKSTIASASQDGTVVIWTCAKEGEQ----WE------------GRVLK  255 (302)
Q Consensus       201 ~~~~~~~-------h--~~~v~~v~~~p~~~~~~~~l~s~s~D~~i~iwd~~~~~~~----~~------------~~~~~  255 (302)
                      |.+....       +  --...|+..+|..   +.+||.|+.|-..|+||.+.....    +.            ..+..
T Consensus       183 c~p~~~~~~~l~ny~~~lielk~ltisp~r---p~~laVGgsdpfarLYD~Rr~lks~~s~~~~~~~pp~~~~cv~yf~p  259 (758)
T KOG1310|consen  183 CNPDEDCPSILVNYNPQLIELKCLTISPSR---PYYLAVGGSDPFARLYDRRRVLKSFRSDGTMNTCPPKDCRCVRYFSP  259 (758)
T ss_pred             CCccccccHHHHHhchhhheeeeeeecCCC---CceEEecCCCchhhhhhhhhhccCCCCCccccCCCCcccchhheecC
Confidence            1111111       1  1135789999974   689999999999999995432100    10            00111


Q ss_pred             cCC-----------CcEEEEEEccCCCEEE-EecCCceEEeeecCCce
Q 022111          256 DFK-----------TPVWSVSWSLTGNLLA-VADANNVTLWKEAVDGE  291 (302)
Q Consensus       256 ~~~-----------~~v~~~~~spdg~~la-~~~~d~i~~w~~~~~~~  291 (302)
                      ++-           ..+.-+.|||+|..|+ .-+.+.|.+++.+....
T Consensus       260 ~hlkn~~gn~~~~~~~~t~vtfnpNGtElLvs~~gEhVYlfdvn~~~~  307 (758)
T KOG1310|consen  260 GHLKNSQGNLDRYITCCTYVTFNPNGTELLVSWGGEHVYLFDVNEDKS  307 (758)
T ss_pred             ccccCcccccccceeeeEEEEECCCCcEEEEeeCCeEEEEEeecCCCC
Confidence            111           1245689999996554 44666899999865443

>COG2319 FOG: WD40 repeat [General function prediction only]

Probab=99.73  E-value=2.9e-14  Score=126.67  Aligned_cols=246  Identities=31%  Similarity=0.461  Sum_probs=171.9

Q ss_pred             ceeEEEE-ccCCC-EEEEeeC-CCcEEEEeecCCCceEEEEecCcccCeEEEEeeCCCCCCEEEEEeC-CCeEEEEEcCC
Q 022111           13 TVHDVAM-DFYGK-RLATASS-DSSIKIIGLSNSASQHLATLKGHRGPVWQVAWAHPKFGSILASCSY-DGQVIIWKEGN   88 (302)
Q Consensus        13 ~v~~~~~-s~~~~-~l~s~~~-d~~v~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~s~-D~~i~iwd~~~   88 (302)
                      .+..+.+ ++++. .++..+. |+.+++|+... .......+..|...|..++|++.  +..+++++. |+.+++|+...
T Consensus       111 ~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~-~~~~~~~~~~~~~~v~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~  187 (466)
T COG2319         111 SVSKLALSSPDGNSILLASSSLDGTVKLWDLST-PGKLIRTLEGHSESVTSLAFSPD--GKLLASGSSLDGTIKLWDLRT  187 (466)
T ss_pred             ceeeEEEECCCcceEEeccCCCCccEEEEEecC-CCeEEEEEecCcccEEEEEECCC--CCEEEecCCCCCceEEEEcCC
Confidence            5666666 77777 5555455 99999999864 12456677889999999999864  568888885 99999999876


Q ss_pred             CCceeEEEEecCCCCCeeEEEecCCCCCcEEEEEecCCcEEEEEecCCCCeeeeeecccCCCCeEEEEeCCCCCCCceee
Q 022111           89 QNDWTQAHTFNDHKSSVNSIAWAPHELGLSLACGSSDGNISVFTATADGGWDTTRIDQAHPVGVTSVSWAPAMAPGALVG  168 (302)
Q Consensus        89 ~~~~~~~~~~~~h~~~i~~l~~~pd~~~~~l~sg~~d~~v~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~  168 (302)
                      .   .....+.+|...|.+++|+|+.. ..+++++.|+.+++||.... ......+ ..|.... -..|+|..       
T Consensus       188 ~---~~~~~~~~~~~~v~~~~~~~~~~-~~~~~~~~d~~i~~wd~~~~-~~~~~~~-~~~~~~~-~~~~~~~~-------  253 (466)
T COG2319         188 G---KPLSTLAGHTDPVSSLAFSPDGG-LLIASGSSDGTIRLWDLSTG-KLLRSTL-SGHSDSV-VSSFSPDG-------  253 (466)
T ss_pred             C---ceEEeeccCCCceEEEEEcCCcc-eEEEEecCCCcEEEEECCCC-cEEeeec-CCCCcce-eEeECCCC-------
Confidence            3   35667777999999999998732 35666699999999976522 2111122 3555553 22677652       


Q ss_pred             cccCCCceeEEEeeCCCcEEEEEEecCccccccccccccCCCceeEEEeeCCCCCCccEEEEEecCCeEEEEEeccCCcc
Q 022111          169 LGLLDPVQKLASCGCDNTVKVWKMYNGIWKMDCFPALQMHSDWVRSVAWAPNLGLPKSTIASASQDGTVVIWTCAKEGEQ  248 (302)
Q Consensus       169 ~~~~~~~~~l~s~~~D~~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~l~s~s~D~~i~iwd~~~~~~~  248 (302)
                             ..+++++.|+.+++||+.....   ....+.+|...|.++.|+|++    ..+++++.|+.+++|+.......
T Consensus       254 -------~~~~~~~~d~~~~~~~~~~~~~---~~~~~~~~~~~v~~~~~~~~~----~~~~~~~~d~~~~~~~~~~~~~~  319 (466)
T COG2319         254 -------SLLASGSSDGTIRLWDLRSSSS---LLRTLSGHSSSVLSVAFSPDG----KLLASGSSDGTVRLWDLETGKLL  319 (466)
T ss_pred             -------CEEEEecCCCcEEEeeecCCCc---EEEEEecCCccEEEEEECCCC----CEEEEeeCCCcEEEEEcCCCceE
Confidence                   5788999999999999986532   122226789999999999964    56777888999999987654321


Q ss_pred             eeeeeeccCCCcEEEEEEccCCCEEEEe-cCC-ceEEeeecCCc
Q 022111          249 WEGRVLKDFKTPVWSVSWSLTGNLLAVA-DAN-NVTLWKEAVDG  290 (302)
Q Consensus       249 ~~~~~~~~~~~~v~~~~~spdg~~la~~-~~d-~i~~w~~~~~~  290 (302)
                      .... ...+...+..++|++++..++.+ ..+ .+.+|+.....
T Consensus       320 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~  362 (466)
T COG2319         320 SSLT-LKGHEGPVSSLSFSPDGSLLVSGGSDDGTIRLWDLRTGK  362 (466)
T ss_pred             EEee-ecccCCceEEEEECCCCCEEEEeecCCCcEEeeecCCCc
Confidence            1111 12455568999994343566565 455 68889876543

>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]

Probab=99.72  E-value=1.2e-15  Score=128.55  Aligned_cols=249  Identities=18%  Similarity=0.249  Sum_probs=164.9

Q ss_pred             cccccccceeEEEEccCC-CEEEEeeCCCcEEEEeecCC-----CceEEEEecCcccCeEEEEeeCCCCCCEEEEEeCCC
Q 022111            6 IETGHEDTVHDVAMDFYG-KRLATASSDSSIKIIGLSNS-----ASQHLATLKGHRGPVWQVAWAHPKFGSILASCSYDG   79 (302)
Q Consensus         6 ~~~~h~~~v~~~~~s~~~-~~l~s~~~d~~v~lw~~~~~-----~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~s~D~   79 (302)
                      +..||+.+|.++.|.|.+ ..+||||.|-+|.||.+-..     ..+++..|.||...|-.|.|.| .-.+.|+|++.|.
T Consensus        76 ~v~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L~gH~rrVg~V~wHP-tA~NVLlsag~Dn  154 (472)
T KOG0303|consen   76 LVCGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDLTEPVVELYGHQRRVGLVQWHP-TAPNVLLSAGSDN  154 (472)
T ss_pred             CccCccccccccccCccCCceeecCCCCceEEEEECCCcccccCcccceEEEeecceeEEEEeecc-cchhhHhhccCCc
Confidence            467999999999999865 68999999999999998322     2356778999999999999964 4567899999999


Q ss_pred             eEEEEEcCCCCceeEEEEecCCCCCeeEEEecCCCCCcEEEEEecCCcEEEEEecCCCCeeeeeecccCCC-CeEEEEeC
Q 022111           80 QVIIWKEGNQNDWTQAHTFNDHKSSVNSIAWAPHELGLSLACGSSDGNISVFTATADGGWDTTRIDQAHPV-GVTSVSWA  158 (302)
Q Consensus        80 ~i~iwd~~~~~~~~~~~~~~~h~~~i~~l~~~pd~~~~~l~sg~~d~~v~~~~~~~~~~~~~~~~~~~h~~-~v~~~~~~  158 (302)
                      +|.+|++.++.   .+-++. |.+.|.++.|+-|  |.++++.+.|+.|++||.+.+...  ... .+|.. .-....|-
T Consensus       155 ~v~iWnv~tge---ali~l~-hpd~i~S~sfn~d--Gs~l~TtckDKkvRv~dpr~~~~v--~e~-~~heG~k~~Raifl  225 (472)
T KOG0303|consen  155 TVSIWNVGTGE---ALITLD-HPDMVYSMSFNRD--GSLLCTTCKDKKVRVIDPRRGTVV--SEG-VAHEGAKPARAIFL  225 (472)
T ss_pred             eEEEEeccCCc---eeeecC-CCCeEEEEEeccC--CceeeeecccceeEEEcCCCCcEe--eec-ccccCCCcceeEEe
Confidence            99999998764   344565 9999999999987  779999999999999998765321  222 24543 22233343


Q ss_pred             CCCCCCceeecccCCCceeEEEee----CCCcEEEEEEecCccccccccccccCCCceeEEEeeCCCCCCccEEEEEecC
Q 022111          159 PAMAPGALVGLGLLDPVQKLASCG----CDNTVKVWKMYNGIWKMDCFPALQMHSDWVRSVAWAPNLGLPKSTIASASQD  234 (302)
Q Consensus       159 ~~~~~~~~~~~~~~~~~~~l~s~~----~D~~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~l~s~s~D  234 (302)
                      -+              +. ++|.|    .++.+-|||..+-... -.+.++....+ |.===|.||.   .-.-+.|-.|
T Consensus       226 ~~--------------g~-i~tTGfsr~seRq~aLwdp~nl~eP-~~~~elDtSnG-vl~PFyD~dt---~ivYl~GKGD  285 (472)
T KOG0303|consen  226 AS--------------GK-IFTTGFSRMSERQIALWDPNNLEEP-IALQELDTSNG-VLLPFYDPDT---SIVYLCGKGD  285 (472)
T ss_pred             cc--------------Cc-eeeeccccccccceeccCcccccCc-ceeEEeccCCc-eEEeeecCCC---CEEEEEecCC
Confidence            22              23 44433    3677889997653221 12233333332 3322345664   2345677789


Q ss_pred             CeEEEEEeccCCcceeeeeeccC--CCcEEEEEEccCCCEEEEecCC-ceEEeeecC
Q 022111          235 GTVVIWTCAKEGEQWEGRVLKDF--KTPVWSVSWSLTGNLLAVADAN-NVTLWKEAV  288 (302)
Q Consensus       235 ~~i~iwd~~~~~~~~~~~~~~~~--~~~v~~~~~spdg~~la~~~~d-~i~~w~~~~  288 (302)
                      +.||-|.+.... +.. ..+..|  ..+-..+.|-|-. -+ -.+.+ -.++|+..+
T Consensus       286 ~~IRYyEit~d~-P~~-hyln~f~S~epQRG~g~mPKR-Gl-~Vs~cEI~rfyKl~~  338 (472)
T KOG0303|consen  286 SSIRYFEITNEP-PFV-HYLNTFSSKEPQRGMGFMPKR-GL-DVSKCEIARFYKLHE  338 (472)
T ss_pred             cceEEEEecCCC-cee-EEecccccCCccccccccccc-cc-cchHHHHHHHHHhhc
Confidence            999999986532 221 222333  3456677777742 12 22233 355666544

>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]

Probab=99.71  E-value=2.9e-16  Score=132.50  Aligned_cols=198  Identities=23%  Similarity=0.399  Sum_probs=144.9

Q ss_pred             cCeEEEEeeCCCCCCEEEEEeCCCeEEEEEcCCCCc------eeEEEEecCCCCCeeEEEecCCCCCcEEEEEecCCcEE
Q 022111           56 GPVWQVAWAHPKFGSILASCSYDGQVIIWKEGNQND------WTQAHTFNDHKSSVNSIAWAPHELGLSLACGSSDGNIS  129 (302)
Q Consensus        56 ~~v~~v~~~~~~~~~~l~s~s~D~~i~iwd~~~~~~------~~~~~~~~~h~~~i~~l~~~pd~~~~~l~sg~~d~~v~  129 (302)
                      .+|..+.|... ....+|||+.|..|+||.++....      ......+..|...|+++.|+|+  |.+||+|++++.|.
T Consensus        14 ~pv~s~dfq~n-~~~~laT~G~D~~iriW~v~r~~~~~~~~~V~y~s~Ls~H~~aVN~vRf~p~--gelLASg~D~g~v~   90 (434)
T KOG1009|consen   14 EPVYSVDFQKN-SLNKLATAGGDKDIRIWKVNRSEPGGGDMKVEYLSSLSRHTRAVNVVRFSPD--GELLASGGDGGEVF   90 (434)
T ss_pred             CceEEEEeccC-cccceecccCccceeeeeeeecCCCCCceeEEEeecccCCcceeEEEEEcCC--cCeeeecCCCceEE
Confidence            36888888653 344899999999999998753321      1234467889999999999998  77999999999999


Q ss_pred             EEEecC------CC-------CeeeeeecccCCCCeEEEEeCCCCCCCceeecccCCCceeEEEeeCCCcEEEEEEecCc
Q 022111          130 VFTATA------DG-------GWDTTRIDQAHPVGVTSVSWAPAMAPGALVGLGLLDPVQKLASCGCDNTVKVWKMYNGI  196 (302)
Q Consensus       130 ~~~~~~------~~-------~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~D~~v~iwd~~~~~  196 (302)
                      +|....      +.       .|.......+|...+..++|+|+.              .++++++.|+.+++||+..+.
T Consensus        91 lWk~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~d~--------------~~l~s~s~dns~~l~Dv~~G~  156 (434)
T KOG1009|consen   91 LWKQGDVRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSPDS--------------NFLVSGSVDNSVRLWDVHAGQ  156 (434)
T ss_pred             EEEecCcCCccccchhhhCccceEEEEEecccccchhhhhccCCC--------------ceeeeeeccceEEEEEeccce
Confidence            997651      11       133333334688889999999864              789999999999999999873


Q ss_pred             cccccccccccCCCceeEEEeeCCCCCCccEEEEEecCCeEEEEEeccCCcceee---eee----ccCC-----------
Q 022111          197 WKMDCFPALQMHSDWVRSVAWAPNLGLPKSTIASASQDGTVVIWTCAKEGEQWEG---RVL----KDFK-----------  258 (302)
Q Consensus       197 ~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~l~s~s~D~~i~iwd~~~~~~~~~~---~~~----~~~~-----------  258 (302)
                          ....+..|+..|..++|.|-.    +++++=|.|+..+++.+.........   .+.    .+..           
T Consensus       157 ----l~~~~~dh~~yvqgvawDpl~----qyv~s~s~dr~~~~~~~~~~~~~~~~~~~~m~~~~~~~~e~~s~rLfhDeT  228 (434)
T KOG1009|consen  157 ----LLAILDDHEHYVQGVAWDPLN----QYVASKSSDRHPEGFSAKLKQVIKRHGLDIMPAKAFNEREGKSTRLFHDET  228 (434)
T ss_pred             ----eEeeccccccccceeecchhh----hhhhhhccCcccceeeeeeeeeeeeeeeeEeeecccCCCCcceeeeeecCc
Confidence                456778999999999999974    77999999997777765432111000   000    0001           


Q ss_pred             --CcEEEEEEccCCCEEEEecC
Q 022111          259 --TPVWSVSWSLTGNLLAVADA  278 (302)
Q Consensus       259 --~~v~~~~~spdg~~la~~~~  278 (302)
                        .-...++|+|||.+|++.++
T Consensus       229 lksFFrRlsfTPdG~llvtPag  250 (434)
T KOG1009|consen  229 LKSFFRRLSFTPDGSLLVTPAG  250 (434)
T ss_pred             hhhhhhhcccCCCCcEEEcccc
Confidence              12446799999999887743

>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]

Probab=99.70  E-value=5.3e-16  Score=135.80  Aligned_cols=214  Identities=20%  Similarity=0.302  Sum_probs=156.6

Q ss_pred             EEecCcccCeEEEEeeCCCCCCEEEEEeCCCeEEEEEcCC-----CCceeEEEEecCCCCCeeEEEecCCCCCcEEEEEe
Q 022111           49 ATLKGHRGPVWQVAWAHPKFGSILASCSYDGQVIIWKEGN-----QNDWTQAHTFNDHKSSVNSIAWAPHELGLSLACGS  123 (302)
Q Consensus        49 ~~~~~h~~~v~~v~~~~~~~~~~l~s~s~D~~i~iwd~~~-----~~~~~~~~~~~~h~~~i~~l~~~pd~~~~~l~sg~  123 (302)
                      .++..|.+.|+.+.|.+-  ...|++|+.|+++++|.+..     .....++.+|.+|.++|.|+++.++  +..+.+|+
T Consensus       288 ~tl~s~~d~ir~l~~~~s--ep~lit~sed~~lk~WnLqk~~~s~~~~~epi~tfraH~gPVl~v~v~~n--~~~~ysgg  363 (577)
T KOG0642|consen  288 FTLRSHDDCIRALAFHPS--EPVLITASEDGTLKLWNLQKAKKSAEKDVEPILTFRAHEGPVLCVVVPSN--GEHCYSGG  363 (577)
T ss_pred             eeeecchhhhhhhhcCCC--CCeEEEeccccchhhhhhcccCCccccceeeeEEEecccCceEEEEecCC--ceEEEeec
Confidence            467789999999999542  45789999999999999832     2235678899999999999999886  77999999


Q ss_pred             cCCcEEEEEecCCC----Ce---eeeeecccCCCCeEEEEeCCCCCCCceeecccCCCceeEEEeeCCCcEEEEEEecCc
Q 022111          124 SDGNISVFTATADG----GW---DTTRIDQAHPVGVTSVSWAPAMAPGALVGLGLLDPVQKLASCGCDNTVKVWKMYNGI  196 (302)
Q Consensus       124 ~d~~v~~~~~~~~~----~~---~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~D~~v~iwd~~~~~  196 (302)
                      -||+|+.|.+....    ..   .+.....+|+..+..+++++..              .+|++|+.||++|+|+.....
T Consensus       364 ~Dg~I~~w~~p~n~dp~ds~dp~vl~~~l~Ghtdavw~l~~s~~~--------------~~Llscs~DgTvr~w~~~~~~  429 (577)
T KOG0642|consen  364 IDGTIRCWNLPPNQDPDDSYDPSVLSGTLLGHTDAVWLLALSSTK--------------DRLLSCSSDGTVRLWEPTEES  429 (577)
T ss_pred             cCceeeeeccCCCCCcccccCcchhccceeccccceeeeeecccc--------------cceeeecCCceEEeeccCCcC
Confidence            99999999664211    01   1122234788888888887653              679999999999999964321


Q ss_pred             c--------------------c-----------------cccc---ccc--c-----cCCCceeEEEeeCCCCCCccEEE
Q 022111          197 W--------------------K-----------------MDCF---PAL--Q-----MHSDWVRSVAWAPNLGLPKSTIA  229 (302)
Q Consensus       197 ~--------------------~-----------------~~~~---~~~--~-----~h~~~v~~v~~~p~~~~~~~~l~  229 (302)
                      .                    .                 +...   ..+  .     .....++-+.++|..    ....
T Consensus       430 ~~~f~~~~e~g~Plsvd~~ss~~a~~~~s~~~~~~~~~~~ev~s~~~~~~s~~~~~~~~~~~in~vVs~~~~----~~~~  505 (577)
T KOG0642|consen  430 PCTFGEPKEHGYPLSVDRTSSRPAHSLASFRFGYTSIDDMEVVSDLLIFESSASPGPRRYPQINKVVSHPTA----DITF  505 (577)
T ss_pred             ccccCCccccCCcceEeeccchhHhhhhhcccccccchhhhhhhheeeccccCCCcccccCccceEEecCCC----CeeE
Confidence            1                    0                 0000   000  0     011347788888875    6788


Q ss_pred             EEecCCeEEEEEeccCCcceeeeeeccCCCcEEEEEEccCCCEEEEecCC-ceEEeeec
Q 022111          230 SASQDGTVVIWTCAKEGEQWEGRVLKDFKTPVWSVSWSLTGNLLAVADAN-NVTLWKEA  287 (302)
Q Consensus       230 s~s~D~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~la~~~~d-~i~~w~~~  287 (302)
                      ++-+|+.|+++|.....-.  .. ...+...+.++++-|+|-+|+++++| .+++|+..
T Consensus       506 ~~hed~~Ir~~dn~~~~~l--~s-~~a~~~svtslai~~ng~~l~s~s~d~sv~l~kld  561 (577)
T KOG0642|consen  506 TAHEDRSIRFFDNKTGKIL--HS-MVAHKDSVTSLAIDPNGPYLMSGSHDGSVRLWKLD  561 (577)
T ss_pred             ecccCCceecccccccccc--hh-eeeccceecceeecCCCceEEeecCCceeehhhcc
Confidence            9999999999997653211  01 13456779999999999999999999 79999863

>KOG1188 consensus WD40 repeat protein [General function prediction only]

Probab=99.70  E-value=2e-15  Score=125.04  Aligned_cols=196  Identities=13%  Similarity=0.196  Sum_probs=135.1

Q ss_pred             CEEEEEeCCCeEEEEEcCCCCceeEEEEecCCCCCeeEEEecCCCCCcEEEEEecCCcEEEEEecCCCCeeeeeecccCC
Q 022111           70 SILASCSYDGQVIIWKEGNQNDWTQAHTFNDHKSSVNSIAWAPHELGLSLACGSSDGNISVFTATADGGWDTTRIDQAHP  149 (302)
Q Consensus        70 ~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~h~~~i~~l~~~pd~~~~~l~sg~~d~~v~~~~~~~~~~~~~~~~~~~h~  149 (302)
                      +.+|++...++|++||..+++   .+..|+++...++.++|..++.+..+.+|+.||+|++||++........... .++
T Consensus        41 ~~vav~lSngsv~lyd~~tg~---~l~~fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~~~-~~~  116 (376)
T KOG1188|consen   41 TAVAVSLSNGSVRLYDKGTGQ---LLEEFKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESARISWT-QQS  116 (376)
T ss_pred             eeEEEEecCCeEEEEeccchh---hhheecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhhhheecc-CCC
Confidence            567888888999999987753   5677888999999999976544567999999999999999865433222222 222


Q ss_pred             -CCeEEEEeCCCCCCCceeecccCCCceeEEEeeC----CCcEEEEEEecCccccccccccccCCCceeEEEeeCCCCCC
Q 022111          150 -VGVTSVSWAPAMAPGALVGLGLLDPVQKLASCGC----DNTVKVWKMYNGIWKMDCFPALQMHSDWVRSVAWAPNLGLP  224 (302)
Q Consensus       150 -~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~----D~~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~  224 (302)
                       .+..+++-+              .+...++.|..    |-.|.+||++..++.+.+  -...|.+-|++|+|+|+.   
T Consensus       117 ~~~f~~ld~n--------------ck~~ii~~GtE~~~s~A~v~lwDvR~~qq~l~~--~~eSH~DDVT~lrFHP~~---  177 (376)
T KOG1188|consen  117 GTPFICLDLN--------------CKKNIIACGTELTRSDASVVLWDVRSEQQLLRQ--LNESHNDDVTQLRFHPSD---  177 (376)
T ss_pred             CCcceEeecc--------------CcCCeEEeccccccCceEEEEEEeccccchhhh--hhhhccCcceeEEecCCC---
Confidence             222333211              12234444433    567999999987543333  235799999999999985   


Q ss_pred             ccEEEEEecCCeEEEEEeccCCcceeeeeeccCCCcEEEEEEccCC-CEEEEecCC-ceEEeeecC
Q 022111          225 KSTIASASQDGTVVIWTCAKEGEQWEGRVLKDFKTPVWSVSWSLTG-NLLAVADAN-NVTLWKEAV  288 (302)
Q Consensus       225 ~~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~spdg-~~la~~~~d-~i~~w~~~~  288 (302)
                      ++.|+|||-||.+.+||+....+.-.....-.+...|-.+.|..++ ++|-+-++. +..+|+..+
T Consensus       178 pnlLlSGSvDGLvnlfD~~~d~EeDaL~~viN~~sSI~~igw~~~~ykrI~clTH~Etf~~~ele~  243 (376)
T KOG1188|consen  178 PNLLLSGSVDGLVNLFDTKKDNEEDALLHVINHGSSIHLIGWLSKKYKRIMCLTHMETFAIYELED  243 (376)
T ss_pred             CCeEEeecccceEEeeecCCCcchhhHHHhhcccceeeeeeeecCCcceEEEEEccCceeEEEccC
Confidence            7999999999999999997643211001112445668899999887 345455555 899998754

>KOG0649 consensus WD40 repeat protein [General function prediction only]

Probab=99.69  E-value=2e-14  Score=114.19  Aligned_cols=236  Identities=18%  Similarity=0.247  Sum_probs=155.5

Q ss_pred             ceeEEEEccCCCEEEEeeCCCcEEEEeecC--------CCceEEEEecCcccCeEEEEeeCCCCCCEEEEEeCCCeEEEE
Q 022111           13 TVHDVAMDFYGKRLATASSDSSIKIIGLSN--------SASQHLATLKGHRGPVWQVAWAHPKFGSILASCSYDGQVIIW   84 (302)
Q Consensus        13 ~v~~~~~s~~~~~l~s~~~d~~v~lw~~~~--------~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~s~D~~i~iw   84 (302)
                      .|..-+++|.+++|++|..+|+|.+..+.+        +....+....+|+++|+.++|.    ...|.+|+ ||.|+=|
T Consensus        12 tvf~qa~sp~~~~l~agn~~G~iav~sl~sl~s~sa~~~gk~~iv~eqahdgpiy~~~f~----d~~Lls~g-dG~V~gw   86 (325)
T KOG0649|consen   12 TVFAQAISPSKQYLFAGNLFGDIAVLSLKSLDSGSAEPPGKLKIVPEQAHDGPIYYLAFH----DDFLLSGG-DGLVYGW   86 (325)
T ss_pred             HHHHHhhCCcceEEEEecCCCeEEEEEehhhhccccCCCCCcceeeccccCCCeeeeeee----hhheeecc-CceEEEe
Confidence            455557899999999999999999998732        1122455668999999999995    24666765 5999999


Q ss_pred             EcCCCCc---eeEEE--EecCC-----CCCeeEEEecCCCCCcEEEEEecCCcEEEEEecCCCCeeeeeecccCCCCeEE
Q 022111           85 KEGNQND---WTQAH--TFNDH-----KSSVNSIAWAPHELGLSLACGSSDGNISVFTATADGGWDTTRIDQAHPVGVTS  154 (302)
Q Consensus        85 d~~~~~~---~~~~~--~~~~h-----~~~i~~l~~~pd~~~~~l~sg~~d~~v~~~~~~~~~~~~~~~~~~~h~~~v~~  154 (302)
                      ..++...   .+.+.  ....|     -..|+++-+-|.++  .+..++.|+.++-||++++ .+. ..++ +|+.-+.+
T Consensus        87 ~W~E~~es~~~K~lwe~~~P~~~~~~evPeINam~ldP~en--Si~~AgGD~~~y~~dlE~G-~i~-r~~r-GHtDYvH~  161 (325)
T KOG0649|consen   87 EWNEEEESLATKRLWEVKIPMQVDAVEVPEINAMWLDPSEN--SILFAGGDGVIYQVDLEDG-RIQ-REYR-GHTDYVHS  161 (325)
T ss_pred             eehhhhhhccchhhhhhcCccccCcccCCccceeEeccCCC--cEEEecCCeEEEEEEecCC-EEE-EEEc-CCcceeee
Confidence            7643221   00100  01112     24688998888754  3555568999999999854 232 3444 89998888


Q ss_pred             EEeCCCCCCCceeecccCCCceeEEEeeCCCcEEEEEEecCcccccccc------ccccC-CCceeEEEeeCCCCCCccE
Q 022111          155 VSWAPAMAPGALVGLGLLDPVQKLASCGCDNTVKVWKMYNGIWKMDCFP------ALQMH-SDWVRSVAWAPNLGLPKST  227 (302)
Q Consensus       155 ~~~~~~~~~~~~~~~~~~~~~~~l~s~~~D~~v~iwd~~~~~~~~~~~~------~~~~h-~~~v~~v~~~p~~~~~~~~  227 (302)
                      +.--..              ..+++||++||++||||+++.+-. ..+.      .+..| ..||.+++-+.|      .
T Consensus       162 vv~R~~--------------~~qilsG~EDGtvRvWd~kt~k~v-~~ie~yk~~~~lRp~~g~wigala~~ed------W  220 (325)
T KOG0649|consen  162 VVGRNA--------------NGQILSGAEDGTVRVWDTKTQKHV-SMIEPYKNPNLLRPDWGKWIGALAVNED------W  220 (325)
T ss_pred             eeeccc--------------CcceeecCCCccEEEEecccccee-EEeccccChhhcCcccCceeEEEeccCc------e
Confidence            764211              357999999999999999886311 1111      12233 457889887654      4


Q ss_pred             EEEEecCCeEEEEEeccCCcceeeeeeccCCCcEEEEEEccCCCEEEEec-CCceEEeee
Q 022111          228 IASASQDGTVVIWTCAKEGEQWEGRVLKDFKTPVWSVSWSLTGNLLAVAD-ANNVTLWKE  286 (302)
Q Consensus       228 l~s~s~D~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~la~~~-~d~i~~w~~  286 (302)
                      ++.| ....+.+|.++...-    .....+..++.-+.|-.  +.+++++ ++.+.-|..
T Consensus       221 lvCG-gGp~lslwhLrsse~----t~vfpipa~v~~v~F~~--d~vl~~G~g~~v~~~~l  273 (325)
T KOG0649|consen  221 LVCG-GGPKLSLWHLRSSES----TCVFPIPARVHLVDFVD--DCVLIGGEGNHVQSYTL  273 (325)
T ss_pred             EEec-CCCceeEEeccCCCc----eEEEecccceeEeeeec--ceEEEeccccceeeeee
Confidence            5554 456689999987532    22245567788888843  3455554 446887875

>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]

Probab=99.69  E-value=9.7e-15  Score=136.19  Aligned_cols=252  Identities=14%  Similarity=0.177  Sum_probs=167.8

Q ss_pred             ceeEEEEccCCCEEEEeeCCCcEEEEeecCCCceEEEEecC---cccCeEEEEeeCCCCCCEEEEEeCCCeEEEEEcCCC
Q 022111           13 TVHDVAMDFYGKRLATASSDSSIKIIGLSNSASQHLATLKG---HRGPVWQVAWAHPKFGSILASCSYDGQVIIWKEGNQ   89 (302)
Q Consensus        13 ~v~~~~~s~~~~~l~s~~~d~~v~lw~~~~~~~~~~~~~~~---h~~~v~~v~~~~~~~~~~l~s~s~D~~i~iwd~~~~   89 (302)
                      +-..+.|+|....++++..--.|++||.+.+  +.+..|..   -...|+.+++.+..+..++.+|+.||.||||+--..
T Consensus      1066 ~pk~~~~hpf~p~i~~ad~r~~i~vwd~e~~--~~l~~F~n~~~~~t~Vs~l~liNe~D~aLlLtas~dGvIRIwk~y~~ 1143 (1387)
T KOG1517|consen 1066 PPKTLKFHPFEPQIAAADDRERIRVWDWEKG--RLLNGFDNGAFPDTRVSDLELINEQDDALLLTASSDGVIRIWKDYAD 1143 (1387)
T ss_pred             CCceeeecCCCceeEEcCCcceEEEEecccC--ceeccccCCCCCCCccceeeeecccchhheeeeccCceEEEeccccc
Confidence            4455788999999998887788999998653  33333432   245689999988777778999999999999975221


Q ss_pred             --CceeEEEEe---cCC----CCCeeEEEecCCCCCcEEEEEecCCcEEEEEecCCCCeeeeeecccCCCCeEEEEeCCC
Q 022111           90 --NDWTQAHTF---NDH----KSSVNSIAWAPHELGLSLACGSSDGNISVFTATADGGWDTTRIDQAHPVGVTSVSWAPA  160 (302)
Q Consensus        90 --~~~~~~~~~---~~h----~~~i~~l~~~pd~~~~~l~sg~~d~~v~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~  160 (302)
                        ...+.+..+   .++    .+.-.-++|... .|. |.++++-+.|+|||.......  ..+..+....++++.-+. 
T Consensus      1144 ~~~~~eLVTaw~~Ls~~~~~~r~~~~v~dWqQ~-~G~-Ll~tGd~r~IRIWDa~~E~~~--~diP~~s~t~vTaLS~~~- 1218 (1387)
T KOG1517|consen 1144 KWKKPELVTAWSSLSDQLPGARGTGLVVDWQQQ-SGH-LLVTGDVRSIRIWDAHKEQVV--ADIPYGSSTLVTALSADL- 1218 (1387)
T ss_pred             ccCCceeEEeeccccccCccCCCCCeeeehhhh-CCe-EEecCCeeEEEEEecccceeE--eecccCCCccceeecccc-
Confidence              111222211   111    112234567543 455 555555899999998754322  222212223344443211 


Q ss_pred             CCCCceeecccCCCceeEEEeeCCCcEEEEEEecCccccccccccccCCCc--eeEEEeeCCCCCCccEEEEEecCCeEE
Q 022111          161 MAPGALVGLGLLDPVQKLASCGCDNTVKVWKMYNGIWKMDCFPALQMHSDW--VRSVAWAPNLGLPKSTIASASQDGTVV  238 (302)
Q Consensus       161 ~~~~~~~~~~~~~~~~~l~s~~~D~~v~iwd~~~~~~~~~~~~~~~~h~~~--v~~v~~~p~~~~~~~~l~s~s~D~~i~  238 (302)
                                  ..+..++.|-.||.|++||.+-.... ..+.....|.++  |..+.+.++| +  ..|++||.||.|+
T Consensus      1219 ------------~~gn~i~AGfaDGsvRvyD~R~a~~d-s~v~~~R~h~~~~~Iv~~slq~~G-~--~elvSgs~~G~I~ 1282 (1387)
T KOG1517|consen 1219 ------------VHGNIIAAGFADGSVRVYDRRMAPPD-SLVCVYREHNDVEPIVHLSLQRQG-L--GELVSGSQDGDIQ 1282 (1387)
T ss_pred             ------------cCCceEEEeecCCceEEeecccCCcc-ccceeecccCCcccceeEEeecCC-C--cceeeeccCCeEE
Confidence                        12578999999999999998754321 223456778887  9999999876 2  3799999999999


Q ss_pred             EEEeccCCcceeee--eeccCCCcEEEEEEccCCCEEEEecCCceEEeeec
Q 022111          239 IWTCAKEGEQWEGR--VLKDFKTPVWSVSWSLTGNLLAVADANNVTLWKEA  287 (302)
Q Consensus       239 iwd~~~~~~~~~~~--~~~~~~~~v~~~~~spdg~~la~~~~d~i~~w~~~  287 (302)
                      +||++.........  ...++++...++.-+++..++|+|+...|.||+..
T Consensus      1283 ~~DlR~~~~e~~~~iv~~~~yGs~lTal~VH~hapiiAsGs~q~ikIy~~~ 1333 (1387)
T KOG1517|consen 1283 LLDLRMSSKETFLTIVAHWEYGSALTALTVHEHAPIIASGSAQLIKIYSLS 1333 (1387)
T ss_pred             EEecccCcccccceeeeccccCccceeeeeccCCCeeeecCcceEEEEecC
Confidence            99999742111111  11344556889999999999999988789999974

>KOG1963 consensus WD40 repeat protein [General function prediction only]

Probab=99.69  E-value=2e-14  Score=131.90  Aligned_cols=270  Identities=20%  Similarity=0.267  Sum_probs=168.9

Q ss_pred             ccccceeEEEEccCCCEEEEeeCCCcEEEEe-ec-CCCceEEEEecCcccCeEEEEeeCCCCCCEEEEEeCCCeEEEEEc
Q 022111            9 GHEDTVHDVAMDFYGKRLATASSDSSIKIIG-LS-NSASQHLATLKGHRGPVWQVAWAHPKFGSILASCSYDGQVIIWKE   86 (302)
Q Consensus         9 ~h~~~v~~~~~s~~~~~l~s~~~d~~v~lw~-~~-~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~s~D~~i~iwd~   86 (302)
                      .|...+++.++||+++++|+|..||.|.+|. +. .........+.-|.++|.+++|+++  |.+|.||+.++.+.+|.+
T Consensus       203 ~Htf~~t~~~~spn~~~~Aa~d~dGrI~vw~d~~~~~~~~t~t~lHWH~~~V~~L~fS~~--G~~LlSGG~E~VLv~Wq~  280 (792)
T KOG1963|consen  203 HHTFNITCVALSPNERYLAAGDSDGRILVWRDFGSSDDSETCTLLHWHHDEVNSLSFSSD--GAYLLSGGREGVLVLWQL  280 (792)
T ss_pred             hhcccceeEEeccccceEEEeccCCcEEEEeccccccccccceEEEecccccceeEEecC--CceEeecccceEEEEEee
Confidence            5777789999999999999999999999995 33 1222345667889999999999974  899999999999999998


Q ss_pred             CCCCceeEEEEecCCCCCeeEEEecCCCCCcEEEEEecCCcEEEEEecCCCC-eeeeeec-------ccCCCCeEEEEeC
Q 022111           87 GNQNDWTQAHTFNDHKSSVNSIAWAPHELGLSLACGSSDGNISVFTATADGG-WDTTRID-------QAHPVGVTSVSWA  158 (302)
Q Consensus        87 ~~~~~~~~~~~~~~h~~~i~~l~~~pd~~~~~l~sg~~d~~v~~~~~~~~~~-~~~~~~~-------~~h~~~v~~~~~~  158 (302)
                      .++.    .+-+.--..+|..+.++||  +...+..-.|+.|.+-...+... ..+..+.       .....-.+.++.+
T Consensus       281 ~T~~----kqfLPRLgs~I~~i~vS~d--s~~~sl~~~DNqI~li~~~dl~~k~tIsgi~~~~~~~k~~~~~l~t~~~id  354 (792)
T KOG1963|consen  281 ETGK----KQFLPRLGSPILHIVVSPD--SDLYSLVLEDNQIHLIKASDLEIKSTISGIKPPTPSTKTRPQSLTTGVSID  354 (792)
T ss_pred             cCCC----cccccccCCeeEEEEEcCC--CCeEEEEecCceEEEEeccchhhhhhccCccCCCccccccccccceeEEEc
Confidence            7753    1223345789999999998  44677777799998875532100 0000000       0001112334444


Q ss_pred             CCC-------CCCce--eec--------------cc----------------CCCceeEEEeeC--------CC--cEEE
Q 022111          159 PAM-------APGAL--VGL--------------GL----------------LDPVQKLASCGC--------DN--TVKV  189 (302)
Q Consensus       159 ~~~-------~~~~~--~~~--------------~~----------------~~~~~~l~s~~~--------D~--~v~i  189 (302)
                      |..       .++.+  ..+              ..                .-.+..++|.-.        |+  .+|+
T Consensus       355 pr~~~~vln~~~g~vQ~ydl~td~~i~~~~v~~~n~~~~~~n~~v~itav~~~~~gs~maT~E~~~d~~~~~~~e~~LKF  434 (792)
T KOG1963|consen  355 PRTNSLVLNGHPGHVQFYDLYTDSTIYKLQVCDENYSDGDVNIQVGITAVARSRFGSWMATLEARIDKFNFFDGEVSLKF  434 (792)
T ss_pred             CCCCceeecCCCceEEEEeccccceeeeEEEEeecccCCcceeEEeeeeehhhccceEEEEeeeeehhhhccCceEEEEE
Confidence            421       01100  000              00                001233333311        21  3455


Q ss_pred             EEEecCccccccccc-cccCCCceeEEEeeCCCCCCccEEEEEecCCeEEEEEecc------CCcceeeeeec-cCCCcE
Q 022111          190 WKMYNGIWKMDCFPA-LQMHSDWVRSVAWAPNLGLPKSTIASASQDGTVVIWTCAK------EGEQWEGRVLK-DFKTPV  261 (302)
Q Consensus       190 wd~~~~~~~~~~~~~-~~~h~~~v~~v~~~p~~~~~~~~l~s~s~D~~i~iwd~~~------~~~~~~~~~~~-~~~~~v  261 (302)
                      |--....+.+..... -..|...+...++.+...  ....++++.||.+|||-+..      ....|...... -++.++
T Consensus       435 W~~n~~~kt~~L~T~I~~PH~~~~vat~~~~~~r--s~~~vta~~dg~~KiW~~~~~~n~~k~~s~W~c~~i~sy~k~~i  512 (792)
T KOG1963|consen  435 WQYNPNSKTFILNTKINNPHGNAFVATIFLNPTR--SVRCVTASVDGDFKIWVFTDDSNIYKKSSNWTCKAIGSYHKTPI  512 (792)
T ss_pred             EEEcCCcceeEEEEEEecCCCceeEEEEEecCcc--cceeEEeccCCeEEEEEEecccccCcCccceEEeeeeccccCcc
Confidence            654433222221111 235777766766654321  23799999999999999833      22234333222 245689


Q ss_pred             EEEEEccCCCEEEEecCCceEEeeecC
Q 022111          262 WSVSWSLTGNLLAVADANNVTLWKEAV  288 (302)
Q Consensus       262 ~~~~~spdg~~la~~~~d~i~~w~~~~  288 (302)
                      .+++||.||..|+++-++.|.+||...
T Consensus       513 ~a~~fs~dGslla~s~~~~Itiwd~~~  539 (792)
T KOG1963|consen  513 TALCFSQDGSLLAVSFDDTITIWDYDT  539 (792)
T ss_pred             cchhhcCCCcEEEEecCCEEEEecCCC
Confidence            999999999999999999999999754

>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=99.68  E-value=5.5e-14  Score=117.67  Aligned_cols=237  Identities=16%  Similarity=0.195  Sum_probs=150.8

Q ss_pred             ccceeEEEEccCCCEEEEeeCCCcEEEEeecCCCceEEEEecCcccCeEEEEeeCCCCCCEEEEEeCCCe--EEEEEcCC
Q 022111           11 EDTVHDVAMDFYGKRLATASSDSSIKIIGLSNSASQHLATLKGHRGPVWQVAWAHPKFGSILASCSYDGQ--VIIWKEGN   88 (302)
Q Consensus        11 ~~~v~~~~~s~~~~~l~s~~~d~~v~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~s~D~~--i~iwd~~~   88 (302)
                      ...+..++|+.+...|..|+.||. ++|+.+.. .+...... ..-.|--+=|+    ..++|..+.+.-  +++.+.+.
T Consensus         5 ~~ti~~~~~Nqd~~~lsvGs~~Gy-k~~~~~~~-~k~~~~~~-~~~~IvEmLFS----SSLvaiV~~~qpr~Lkv~~~Kk   77 (391)
T KOG2110|consen    5 KPTINFIGFNQDSTLLSVGSKDGY-KIFSCSPF-EKCFSKDT-EGVSIVEMLFS----SSLVAIVSIKQPRKLKVVHFKK   77 (391)
T ss_pred             CcceeeeeeccceeEEEccCCCce-eEEecCch-HHhhcccC-CCeEEEEeecc----cceeEEEecCCCceEEEEEccc
Confidence            456777889999999999998884 78776431 22111111 12223344454    356676665444  88888765


Q ss_pred             CCceeEEEEecCCCCCeeEEEecCCCCCcEEEEEecCCcEEEEEecCCCCeeeeeecccCCCCeEEEEeCCCCCCCceee
Q 022111           89 QNDWTQAHTFNDHKSSVNSIAWAPHELGLSLACGSSDGNISVFTATADGGWDTTRIDQAHPVGVTSVSWAPAMAPGALVG  168 (302)
Q Consensus        89 ~~~~~~~~~~~~h~~~i~~l~~~pd~~~~~l~sg~~d~~v~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~  168 (302)
                      .... +  .+. ...+|.++.++.+    +|+.+=.+ .|.|||++.............++..+..+..++.        
T Consensus        78 ~~~I-C--e~~-fpt~IL~VrmNr~----RLvV~Lee-~IyIydI~~MklLhTI~t~~~n~~gl~AlS~n~~--------  140 (391)
T KOG2110|consen   78 KTTI-C--EIF-FPTSILAVRMNRK----RLVVCLEE-SIYIYDIKDMKLLHTIETTPPNPKGLCALSPNNA--------  140 (391)
T ss_pred             CceE-E--EEe-cCCceEEEEEccc----eEEEEEcc-cEEEEecccceeehhhhccCCCccceEeeccCCC--------
Confidence            5322 2  222 4567999999754    45555444 4999999865332211111123444444333322        


Q ss_pred             cccCCCceeEEE--eeCCCcEEEEEEecCccccccccccccCCCceeEEEeeCCCCCCccEEEEEecCCe-EEEEEeccC
Q 022111          169 LGLLDPVQKLAS--CGCDNTVKVWKMYNGIWKMDCFPALQMHSDWVRSVAWAPNLGLPKSTIASASQDGT-VVIWTCAKE  245 (302)
Q Consensus       169 ~~~~~~~~~l~s--~~~D~~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~l~s~s~D~~-i~iwd~~~~  245 (302)
                            +.+||-  +..-|.|.|||+.+-    .....+..|++.+-+++|+|+|    ..|||+|+.|+ ||+|.+...
T Consensus       141 ------n~ylAyp~s~t~GdV~l~d~~nl----~~v~~I~aH~~~lAalafs~~G----~llATASeKGTVIRVf~v~~G  206 (391)
T KOG2110|consen  141 ------NCYLAYPGSTTSGDVVLFDTINL----QPVNTINAHKGPLAALAFSPDG----TLLATASEKGTVIRVFSVPEG  206 (391)
T ss_pred             ------CceEEecCCCCCceEEEEEcccc----eeeeEEEecCCceeEEEECCCC----CEEEEeccCceEEEEEEcCCc
Confidence                  223443  223678999998764    3344567899999999999996    78999999997 899998654


Q ss_pred             CcceeeeeeccC-CCcEEEEEEccCCCEEEEecCC-ceEEeeec
Q 022111          246 GEQWEGRVLKDF-KTPVWSVSWSLTGNLLAVADAN-NVTLWKEA  287 (302)
Q Consensus       246 ~~~~~~~~~~~~-~~~v~~~~~spdg~~la~~~~d-~i~~w~~~  287 (302)
                      ...  .++..+. -..|++++|+||+.+|++.+.. +|++++..
T Consensus       207 ~kl--~eFRRG~~~~~IySL~Fs~ds~~L~~sS~TeTVHiFKL~  248 (391)
T KOG2110|consen  207 QKL--YEFRRGTYPVSIYSLSFSPDSQFLAASSNTETVHIFKLE  248 (391)
T ss_pred             cEe--eeeeCCceeeEEEEEEECCCCCeEEEecCCCeEEEEEec
Confidence            322  2222222 2458999999999999888776 89999974

>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]

Probab=99.68  E-value=1.9e-15  Score=134.23  Aligned_cols=245  Identities=17%  Similarity=0.213  Sum_probs=157.7

Q ss_pred             CCCEEEE--eeCCCcEEEEeecCCCceEEEEecC--cccCeEEEEeeCCCCCCEEEEEeCCCeEEEEEcCCCC----cee
Q 022111           22 YGKRLAT--ASSDSSIKIIGLSNSASQHLATLKG--HRGPVWQVAWAHPKFGSILASCSYDGQVIIWKEGNQN----DWT   93 (302)
Q Consensus        22 ~~~~l~s--~~~d~~v~lw~~~~~~~~~~~~~~~--h~~~v~~v~~~~~~~~~~l~s~s~D~~i~iwd~~~~~----~~~   93 (302)
                      +.+++|.  +|..|.|-||++.....-+-..+.+  ....|+.+.|.| .+...||.++.||.|+||.+..+.    ..+
T Consensus       590 n~~rvAVPL~g~gG~iai~el~~PGrLPDgv~p~l~Ngt~vtDl~WdP-FD~~rLAVa~ddg~i~lWr~~a~gl~e~~~t  668 (1012)
T KOG1445|consen  590 NNKRVAVPLAGSGGVIAIYELNEPGRLPDGVMPGLFNGTLVTDLHWDP-FDDERLAVATDDGQINLWRLTANGLPENEMT  668 (1012)
T ss_pred             ccceEEEEecCCCceEEEEEcCCCCCCCcccccccccCceeeecccCC-CChHHeeecccCceEEEEEeccCCCCcccCC
Confidence            3455543  3567899999996532111111211  345689999976 467899999999999999985432    234


Q ss_pred             EEEEecCCCCCeeEEEecCCCCCcEEEEEecCCcEEEEEecCCCCeeeeeecccCCCCeEEEEeCCCCCCCceeecccCC
Q 022111           94 QAHTFNDHKSSVNSIAWAPHELGLSLACGSSDGNISVFTATADGGWDTTRIDQAHPVGVTSVSWAPAMAPGALVGLGLLD  173 (302)
Q Consensus        94 ~~~~~~~h~~~i~~l~~~pd~~~~~l~sg~~d~~v~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~  173 (302)
                      +...++.|.++|.++.|+|-. ...|++++.|.+|++||+.....  ...+ .+|..+|..++|+|++            
T Consensus       669 Pe~~lt~h~eKI~slRfHPLA-advLa~asyd~Ti~lWDl~~~~~--~~~l-~gHtdqIf~~AWSpdG------------  732 (1012)
T KOG1445|consen  669 PEKILTIHGEKITSLRFHPLA-ADVLAVASYDSTIELWDLANAKL--YSRL-VGHTDQIFGIAWSPDG------------  732 (1012)
T ss_pred             cceeeecccceEEEEEecchh-hhHhhhhhccceeeeeehhhhhh--hhee-ccCcCceeEEEECCCC------------
Confidence            556788999999999999974 45799999999999999985432  2334 3899999999999974            


Q ss_pred             CceeEEEeeCCCcEEEEEEecCccccccccccccCCCceeEEEeeCCCCCCccEEEEEecCC----eEEEEEeccCCcce
Q 022111          174 PVQKLASCGCDNTVKVWKMYNGIWKMDCFPALQMHSDWVRSVAWAPNLGLPKSTIASASQDG----TVVIWTCAKEGEQW  249 (302)
Q Consensus       174 ~~~~l~s~~~D~~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~l~s~s~D~----~i~iwd~~~~~~~~  249 (302)
                        +++|+.+.|++|++|..+++...+..-....+  ..--.|-|.-|+    .+++..+.|+    .|.+||.+.....-
T Consensus       733 --r~~AtVcKDg~~rVy~Prs~e~pv~Eg~gpvg--tRgARi~wacdg----r~viv~Gfdk~SeRQv~~Y~Aq~l~~~p  804 (1012)
T KOG1445|consen  733 --RRIATVCKDGTLRVYEPRSREQPVYEGKGPVG--TRGARILWACDG----RIVIVVGFDKSSERQVQMYDAQTLDLRP  804 (1012)
T ss_pred             --cceeeeecCceEEEeCCCCCCCccccCCCCcc--CcceeEEEEecC----cEEEEecccccchhhhhhhhhhhccCCc
Confidence              89999999999999998876432211111111  222456676664    6777777765    36677655321000


Q ss_pred             eeeeeccCCCcEEEEEEccCC-CEEEEecCC-ceEEeeecCCce
Q 022111          250 EGRVLKDFKTPVWSVSWSLTG-NLLAVADAN-NVTLWKEAVDGE  291 (302)
Q Consensus       250 ~~~~~~~~~~~v~~~~~spdg-~~la~~~~d-~i~~w~~~~~~~  291 (302)
                      ......+..-.+.-=.|.+|. -++++|-.| .|.+|..-.+.+
T Consensus       805 l~t~~lDvaps~LvP~YD~Ds~~lfltGKGD~~v~~yEv~~esP  848 (1012)
T KOG1445|consen  805 LYTQVLDVAPSPLVPHYDYDSNVLFLTGKGDRFVNMYEVIYESP  848 (1012)
T ss_pred             ceeeeecccCccccccccCCCceEEEecCCCceEEEEEecCCCc
Confidence            000000110011111244554 455777777 699998754444

>PRK01742 tolB translocation protein TolB; Provisional

Probab=99.67  E-value=1e-14  Score=132.13  Aligned_cols=222  Identities=21%  Similarity=0.229  Sum_probs=144.2

Q ss_pred             cccccccceeEEEEccCCCEEEEeeCC---CcEEEEeecCCCceEEEEecCcccCeEEEEeeCCCCCCEEEEE-eCCCeE
Q 022111            6 IETGHEDTVHDVAMDFYGKRLATASSD---SSIKIIGLSNSASQHLATLKGHRGPVWQVAWAHPKFGSILASC-SYDGQV   81 (302)
Q Consensus         6 ~~~~h~~~v~~~~~s~~~~~l~s~~~d---~~v~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~-s~D~~i   81 (302)
                      ....|...+.+.+|+|||++|+..+.+   .+|++||+..+..+.+..+.+|.   ..++|+|+  |+.|+.+ +.++.+
T Consensus       198 ~lt~~~~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~~l~~~~g~~---~~~~wSPD--G~~La~~~~~~g~~  272 (429)
T PRK01742        198 IVNRSSQPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARKVVASFRGHN---GAPAFSPD--GSRLAFASSKDGVL  272 (429)
T ss_pred             EeccCCCccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCceEEEecCCCcc---CceeECCC--CCEEEEEEecCCcE
Confidence            345677789999999999999987754   36999998765444455555553   36789874  7777765 468887


Q ss_pred             EEEEc--CCCCceeEEEEecCCCCCeeEEEecCCCCCcEEEEE-ecCCcEEEEEecCCCCeeeeeecccCCCCeEEEEeC
Q 022111           82 IIWKE--GNQNDWTQAHTFNDHKSSVNSIAWAPHELGLSLACG-SSDGNISVFTATADGGWDTTRIDQAHPVGVTSVSWA  158 (302)
Q Consensus        82 ~iwd~--~~~~~~~~~~~~~~h~~~i~~l~~~pd~~~~~l~sg-~~d~~v~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~  158 (302)
                      .||.+  .+.    ....+..+...+....|+||  |..|+.. ..++...+|++...+... ..+  .+..  ....|+
T Consensus       273 ~Iy~~d~~~~----~~~~lt~~~~~~~~~~wSpD--G~~i~f~s~~~g~~~I~~~~~~~~~~-~~l--~~~~--~~~~~S  341 (429)
T PRK01742        273 NIYVMGANGG----TPSQLTSGAGNNTEPSWSPD--GQSILFTSDRSGSPQVYRMSASGGGA-SLV--GGRG--YSAQIS  341 (429)
T ss_pred             EEEEEECCCC----CeEeeccCCCCcCCEEECCC--CCEEEEEECCCCCceEEEEECCCCCe-EEe--cCCC--CCccCC
Confidence            77754  332    23445567777889999998  5555544 457888999876433211 111  2222  345677


Q ss_pred             CCCCCCceeecccCCCceeEEEeeCCCcEEEEEEecCccccccccccccCCCceeEEEeeCCCCCCccEEEEEecCCeEE
Q 022111          159 PAMAPGALVGLGLLDPVQKLASCGCDNTVKVWKMYNGIWKMDCFPALQMHSDWVRSVAWAPNLGLPKSTIASASQDGTVV  238 (302)
Q Consensus       159 ~~~~~~~~~~~~~~~~~~~l~s~~~D~~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~l~s~s~D~~i~  238 (302)
                      |+              ++.|+..+.++ +.+||+.++...  .+  ...+  ...+++|+|++    .+|+.++.++.++
T Consensus       342 pD--------------G~~ia~~~~~~-i~~~Dl~~g~~~--~l--t~~~--~~~~~~~sPdG----~~i~~~s~~g~~~  396 (429)
T PRK01742        342 AD--------------GKTLVMINGDN-VVKQDLTSGSTE--VL--SSTF--LDESPSISPNG----IMIIYSSTQGLGK  396 (429)
T ss_pred             CC--------------CCEEEEEcCCC-EEEEECCCCCeE--Ee--cCCC--CCCCceECCCC----CEEEEEEcCCCce
Confidence            75              46777776665 556998776322  11  1111  23568899996    7899999999999


Q ss_pred             EEEeccCCcceeeeeeccCCCcEEEEEEccC
Q 022111          239 IWTCAKEGEQWEGRVLKDFKTPVWSVSWSLT  269 (302)
Q Consensus       239 iwd~~~~~~~~~~~~~~~~~~~v~~~~~spd  269 (302)
                      +|.+....... ...+..+.+.+...+|||-
T Consensus       397 ~l~~~~~~G~~-~~~l~~~~g~~~~p~wsp~  426 (429)
T PRK01742        397 VLQLVSADGRF-KARLPGSDGQVKFPAWSPY  426 (429)
T ss_pred             EEEEEECCCCc-eEEccCCCCCCCCcccCCC
Confidence            88875322211 1233455667888999983

>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.67  E-value=2.2e-15  Score=127.84  Aligned_cols=202  Identities=17%  Similarity=0.207  Sum_probs=142.1

Q ss_pred             eEEEEccCCCEEEEeeCCCcEEEEeecCCCceEEEEecCcccCeEEEEeeCCCCCCEEEEEeCCCeEEEEEcCCCCceeE
Q 022111           15 HDVAMDFYGKRLATASSDSSIKIIGLSNSASQHLATLKGHRGPVWQVAWAHPKFGSILASCSYDGQVIIWKEGNQNDWTQ   94 (302)
Q Consensus        15 ~~~~~s~~~~~l~s~~~d~~v~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~s~D~~i~iwd~~~~~~~~~   94 (302)
                      ..++|+.+|..|++++.||++|+|++.+  ...+.....|.+.|.++.|+++  |+.|++.+.| ..++|+.+++..+..
T Consensus       148 k~vaf~~~gs~latgg~dg~lRv~~~Ps--~~t~l~e~~~~~eV~DL~FS~d--gk~lasig~d-~~~VW~~~~g~~~a~  222 (398)
T KOG0771|consen  148 KVVAFNGDGSKLATGGTDGTLRVWEWPS--MLTILEEIAHHAEVKDLDFSPD--GKFLASIGAD-SARVWSVNTGAALAR  222 (398)
T ss_pred             eEEEEcCCCCEeeeccccceEEEEecCc--chhhhhhHhhcCccccceeCCC--CcEEEEecCC-ceEEEEeccCchhhh
Confidence            4578999999999999999999999643  2344566789999999999874  8999999999 999999987642211


Q ss_pred             EEEecCCCCCeeEEEecCCCC--CcEEE-EEecCCcEEEEEecCCCC--e-eeeeecccCCCCeEEEEeCCCCCCCceee
Q 022111           95 AHTFNDHKSSVNSIAWAPHEL--GLSLA-CGSSDGNISVFTATADGG--W-DTTRIDQAHPVGVTSVSWAPAMAPGALVG  168 (302)
Q Consensus        95 ~~~~~~h~~~i~~l~~~pd~~--~~~l~-sg~~d~~v~~~~~~~~~~--~-~~~~~~~~h~~~v~~~~~~~~~~~~~~~~  168 (302)
                       .+-..-+.....|.|+.|..  ..+++ .-...+.|+.|++..-..  . ...... .-...+++++-++         
T Consensus       223 -~t~~~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~-~~~~siSsl~VS~---------  291 (398)
T KOG0771|consen  223 -KTPFSKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKI-KRFKSISSLAVSD---------  291 (398)
T ss_pred             -cCCcccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccccccchhhhh-hccCcceeEEEcC---------
Confidence             11123455677888987641  22333 334456777776642110  0 111111 1122466666655         


Q ss_pred             cccCCCceeEEEeeCCCcEEEEEEecCccccccccccccCCCceeEEEeeCCCCCCccEEEEEecCCeEEEEEecc
Q 022111          169 LGLLDPVQKLASCGCDNTVKVWKMYNGIWKMDCFPALQMHSDWVRSVAWAPNLGLPKSTIASASQDGTVVIWTCAK  244 (302)
Q Consensus       169 ~~~~~~~~~l~s~~~D~~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~l~s~s~D~~i~iwd~~~  244 (302)
                           +|+++|.|+.||.|-|++..+-+   .....-..|...|+.|.|+||.    +.+++.|.|...++..+..
T Consensus       292 -----dGkf~AlGT~dGsVai~~~~~lq---~~~~vk~aH~~~VT~ltF~Pds----r~~~svSs~~~~~v~~l~v  355 (398)
T KOG0771|consen  292 -----DGKFLALGTMDGSVAIYDAKSLQ---RLQYVKEAHLGFVTGLTFSPDS----RYLASVSSDNEAAVTKLAV  355 (398)
T ss_pred             -----CCcEEEEeccCCcEEEEEeceee---eeEeehhhheeeeeeEEEcCCc----CcccccccCCceeEEEEee
Confidence                 46999999999999999987642   1122346799999999999995    6789999999999988754

>KOG1334 consensus WD40 repeat protein [General function prediction only]

Probab=99.67  E-value=3.7e-15  Score=128.56  Aligned_cols=268  Identities=17%  Similarity=0.200  Sum_probs=181.9

Q ss_pred             CCcccccccccceeEEEEccCCCEEEEeeCCCcEEEEeecCCCceEEEEecCcccCeEEEEeeCCCCCCEEEEEeCCCeE
Q 022111            2 PAQKIETGHEDTVHDVAMDFYGKRLATASSDSSIKIIGLSNSASQHLATLKGHRGPVWQVAWAHPKFGSILASCSYDGQV   81 (302)
Q Consensus         2 ~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~s~D~~i   81 (302)
                      ..+..+.+|.+-|..+.|...|..|+|||.|.+|.+||+..... .+.-..||...|..-.|.|..+..-+++++.||++
T Consensus       133 ~l~~kL~~H~GcVntV~FN~~Gd~l~SgSDD~~vv~WdW~~~~~-~l~f~SGH~~NvfQaKFiP~s~d~ti~~~s~dgqv  211 (559)
T KOG1334|consen  133 RLQKKLNKHKGCVNTVHFNQRGDVLASGSDDLQVVVWDWVSGSP-KLSFESGHCNNVFQAKFIPFSGDRTIVTSSRDGQV  211 (559)
T ss_pred             hhhhcccCCCCccceeeecccCceeeccCccceEEeehhhccCc-ccccccccccchhhhhccCCCCCcCceeccccCce
Confidence            34566789999999999999999999999999999999976432 22233689999999999876555679999999999


Q ss_pred             EEEEcCCCCceeEEEEecCCCCCeeEEEecCCCCCcEEEEEecCCcEEEEEecCCCCeeeeeecccCCC---CeEEEEeC
Q 022111           82 IIWKEGNQNDWTQAHTFNDHKSSVNSIAWAPHELGLSLACGSSDGNISVFTATADGGWDTTRIDQAHPV---GVTSVSWA  158 (302)
Q Consensus        82 ~iwd~~~~~~~~~~~~~~~h~~~i~~l~~~pd~~~~~l~sg~~d~~v~~~~~~~~~~~~~~~~~~~h~~---~v~~~~~~  158 (302)
                      ++=.+...+...-.+.+..|.++|..++.-|+. ...+.+++.|+.+.-.|++.............+..   ...+++-.
T Consensus       212 r~s~i~~t~~~e~t~rl~~h~g~vhklav~p~s-p~~f~S~geD~~v~~~Dlr~~~pa~~~~cr~~~~~~~v~L~~Ia~~  290 (559)
T KOG1334|consen  212 RVSEILETGYVENTKRLAPHEGPVHKLAVEPDS-PKPFLSCGEDAVVFHIDLRQDVPAEKFVCREADEKERVGLYTIAVD  290 (559)
T ss_pred             eeeeeccccceecceecccccCccceeeecCCC-CCcccccccccceeeeeeccCCccceeeeeccCCccceeeeeEecC
Confidence            997764333222244566799999999999885 35699999999999999886543332222222222   34455555


Q ss_pred             CCCCCCceeecccCCCceeEEEeeCCCcEEEEEEecCccc-------cccccccc-cCCCceeEEEeeCCCCCCccEEEE
Q 022111          159 PAMAPGALVGLGLLDPVQKLASCGCDNTVKVWKMYNGIWK-------MDCFPALQ-MHSDWVRSVAWAPNLGLPKSTIAS  230 (302)
Q Consensus       159 ~~~~~~~~~~~~~~~~~~~l~s~~~D~~v~iwd~~~~~~~-------~~~~~~~~-~h~~~v~~v~~~p~~~~~~~~l~s  230 (302)
                      |..             ...+++++.|..+++||.+.-...       -.|.+.+. ...-.|+|++|+.++   +..|++
T Consensus       291 P~n-------------t~~faVgG~dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~v~ITgl~Ysh~~---sElLaS  354 (559)
T KOG1334|consen  291 PRN-------------TNEFAVGGSDQFARVYDQRRIDKEENNGVLDKFCPHHLVEDDPVNITGLVYSHDG---SELLAS  354 (559)
T ss_pred             CCC-------------ccccccCChhhhhhhhcccchhhccccchhhhcCCccccccCcccceeEEecCCc---cceeee
Confidence            532             357999999999999998653211       01111221 123459999999775   355665


Q ss_pred             EecCCeEEEEEeccCCc----------ceeeeeeccCC--CcEEEEE-EccCCCEEEEecCC-ceEEeeecC
Q 022111          231 ASQDGTVVIWTCAKEGE----------QWEGRVLKDFK--TPVWSVS-WSLTGNLLAVADAN-NVTLWKEAV  288 (302)
Q Consensus       231 ~s~D~~i~iwd~~~~~~----------~~~~~~~~~~~--~~v~~~~-~spdg~~la~~~~d-~i~~w~~~~  288 (302)
                      -+ |--|.+|.-.....          +....+.++|.  ..|..+- |-|..+|+++|++. .|.||+-+.
T Consensus       355 Yn-De~IYLF~~~~~~G~~p~~~s~~~~~~k~vYKGHrN~~TVKgVNFfGPrsEyVvSGSDCGhIFiW~K~t  425 (559)
T KOG1334|consen  355 YN-DEDIYLFNKSMGDGSEPDPSSPREQYVKRVYKGHRNSRTVKGVNFFGPRSEYVVSGSDCGHIFIWDKKT  425 (559)
T ss_pred             ec-ccceEEeccccccCCCCCCCcchhhccchhhcccccccccceeeeccCccceEEecCccceEEEEecch
Confidence            54 55577875332211          11111234453  2466776 46888999999877 699999643

>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]

Probab=99.66  E-value=8.8e-16  Score=136.26  Aligned_cols=199  Identities=18%  Similarity=0.262  Sum_probs=135.1

Q ss_pred             cceeEEEEcc-CCCEEEEeeCCCcEEEEeecCCC-----ceEEEEecCcccCeEEEEeeCCCCCCEEEEEeCCCeEEEEE
Q 022111           12 DTVHDVAMDF-YGKRLATASSDSSIKIIGLSNSA-----SQHLATLKGHRGPVWQVAWAHPKFGSILASCSYDGQVIIWK   85 (302)
Q Consensus        12 ~~v~~~~~s~-~~~~l~s~~~d~~v~lw~~~~~~-----~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~s~D~~i~iwd   85 (302)
                      ..|+++.|+| |.+.||.+++||.|+||.+..+.     ..+-..+.+|...|+.++|.| --.++|+++++|-+|+|||
T Consensus       628 t~vtDl~WdPFD~~rLAVa~ddg~i~lWr~~a~gl~e~~~tPe~~lt~h~eKI~slRfHP-LAadvLa~asyd~Ti~lWD  706 (1012)
T KOG1445|consen  628 TLVTDLHWDPFDDERLAVATDDGQINLWRLTANGLPENEMTPEKILTIHGEKITSLRFHP-LAADVLAVASYDSTIELWD  706 (1012)
T ss_pred             ceeeecccCCCChHHeeecccCceEEEEEeccCCCCcccCCcceeeecccceEEEEEecc-hhhhHhhhhhccceeeeee
Confidence            4688899987 56899999999999999985432     233456789999999999964 4578999999999999999


Q ss_pred             cCCCCceeEEEEecCCCCCeeEEEecCCCCCcEEEEEecCCcEEEEEecCCCCeeeeeecccCCCCeEEEEeCCCCCCCc
Q 022111           86 EGNQNDWTQAHTFNDHKSSVNSIAWAPHELGLSLACGSSDGNISVFTATADGGWDTTRIDQAHPVGVTSVSWAPAMAPGA  165 (302)
Q Consensus        86 ~~~~~~~~~~~~~~~h~~~i~~l~~~pd~~~~~l~sg~~d~~v~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~  165 (302)
                      +++..   ....+.+|.+.|..++|+||  |.++|+.+.|+++++|.-++.. ..+.+-...-...--.+.|.-+     
T Consensus       707 l~~~~---~~~~l~gHtdqIf~~AWSpd--Gr~~AtVcKDg~~rVy~Prs~e-~pv~Eg~gpvgtRgARi~wacd-----  775 (1012)
T KOG1445|consen  707 LANAK---LYSRLVGHTDQIFGIAWSPD--GRRIATVCKDGTLRVYEPRSRE-QPVYEGKGPVGTRGARILWACD-----  775 (1012)
T ss_pred             hhhhh---hhheeccCcCceeEEEECCC--CcceeeeecCceEEEeCCCCCC-CccccCCCCccCcceeEEEEec-----
Confidence            98764   34467899999999999999  7899999999999999765321 1111100000111223445432     


Q ss_pred             eeecccCCCceeEEEeeCCC----cEEEEEEecCccccccccccccCCCceeEEEe---------eCCCCCCccEEEEEe
Q 022111          166 LVGLGLLDPVQKLASCGCDN----TVKVWKMYNGIWKMDCFPALQMHSDWVRSVAW---------APNLGLPKSTIASAS  232 (302)
Q Consensus       166 ~~~~~~~~~~~~l~s~~~D~----~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~~---------~p~~~~~~~~l~s~s  232 (302)
                               +.+++..|.|+    .|.+||..+-          .+..-.+..++.         .+|.   +..|++|-
T Consensus       776 ---------gr~viv~Gfdk~SeRQv~~Y~Aq~l----------~~~pl~t~~lDvaps~LvP~YD~Ds---~~lfltGK  833 (1012)
T KOG1445|consen  776 ---------GRIVIVVGFDKSSERQVQMYDAQTL----------DLRPLYTQVLDVAPSPLVPHYDYDS---NVLFLTGK  833 (1012)
T ss_pred             ---------CcEEEEecccccchhhhhhhhhhhc----------cCCcceeeeecccCccccccccCCC---ceEEEecC
Confidence                     35555555554    4566665431          100001112222         2232   35789999


Q ss_pred             cCCeEEEEEecc
Q 022111          233 QDGTVVIWTCAK  244 (302)
Q Consensus       233 ~D~~i~iwd~~~  244 (302)
                      .|..|.+|.+-.
T Consensus       834 GD~~v~~yEv~~  845 (1012)
T KOG1445|consen  834 GDRFVNMYEVIY  845 (1012)
T ss_pred             CCceEEEEEecC
Confidence            999999998754

>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]

Probab=99.66  E-value=3.3e-14  Score=129.49  Aligned_cols=233  Identities=20%  Similarity=0.230  Sum_probs=155.9

Q ss_pred             CcEEEEeecCCCceEEEEecCcccCeEEEEeeCCCCCCEEEEEeCCCeEEEEEcCCCCc--eeEE-EEecCCCCCeeEEE
Q 022111           33 SSIKIIGLSNSASQHLATLKGHRGPVWQVAWAHPKFGSILASCSYDGQVIIWKEGNQND--WTQA-HTFNDHKSSVNSIA  109 (302)
Q Consensus        33 ~~v~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~s~D~~i~iwd~~~~~~--~~~~-~~~~~h~~~i~~l~  109 (302)
                      +.+.+|++..+ ..+-..+. -...|.+++|++. ++.+||.|..+|+|.+||++.+..  ...+ .....|..++..+.
T Consensus       222 ~~~~vW~~~~p-~~Pe~~~~-~~s~v~~~~f~p~-~p~ll~gG~y~GqV~lWD~~~~~~~~~s~ls~~~~sh~~~v~~vv  298 (555)
T KOG1587|consen  222 GVLLVWSLKNP-NTPELVLE-SPSEVTCLKFCPF-DPNLLAGGCYNGQVVLWDLRKGSDTPPSGLSALEVSHSEPVTAVV  298 (555)
T ss_pred             ceEEEEecCCC-CCceEEEe-cCCceeEEEeccC-CcceEEeeccCceEEEEEccCCCCCCCcccccccccCCcCeEEEE
Confidence            47899999765 33334443 3567999999764 689999999999999999976543  1111 12335889999999


Q ss_pred             ecCCCCCcEEEEEecCCcEEEEEecCCCC-eeeeee--cc------cCCCCeEEEEeCCCCCCCceeecccCCCceeEEE
Q 022111          110 WAPHELGLSLACGSSDGNISVFTATADGG-WDTTRI--DQ------AHPVGVTSVSWAPAMAPGALVGLGLLDPVQKLAS  180 (302)
Q Consensus       110 ~~pd~~~~~l~sg~~d~~v~~~~~~~~~~-~~~~~~--~~------~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~s  180 (302)
                      |-.+..+.-+++++.||.|..|+.+.-.. ......  ..      .-...+++++|.|..             ...|+.
T Consensus       299 W~~~~~~~~f~s~ssDG~i~~W~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~-------------p~~FiV  365 (555)
T KOG1587|consen  299 WLQNEHNTEFFSLSSDGSICSWDTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTD-------------PNHFIV  365 (555)
T ss_pred             EeccCCCCceEEEecCCcEeeeeccccccchhhcccccccccccccccccceeeEeeccCC-------------CceEEE
Confidence            98765455699999999999998753211 110000  00      112356777776643             256889


Q ss_pred             eeCCCcEEEEEEecCcccc----ccccccccCCCceeEEEeeCCCCCCccEEEEEecCCeEEEEEeccCCcceeeeeecc
Q 022111          181 CGCDNTVKVWKMYNGIWKM----DCFPALQMHSDWVRSVAWAPNLGLPKSTIASASQDGTVVIWTCAKEGEQWEGRVLKD  256 (302)
Q Consensus       181 ~~~D~~v~iwd~~~~~~~~----~~~~~~~~h~~~v~~v~~~p~~~~~~~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~  256 (302)
                      |+.+|.|.-=.-.......    +.+..+..|.++|+++.++|=+   ...|++++ |.++|||.......+.  .....
T Consensus       366 GTe~G~v~~~~r~g~~~~~~~~~~~~~~~~~h~g~v~~v~~nPF~---~k~fls~g-DW~vriWs~~~~~~Pl--~~~~~  439 (555)
T KOG1587|consen  366 GTEEGKVYKGCRKGYTPAPEVSYKGHSTFITHIGPVYAVSRNPFY---PKNFLSVG-DWTVRIWSEDVIASPL--LSLDS  439 (555)
T ss_pred             EcCCcEEEEEeccCCcccccccccccccccccCcceEeeecCCCc---cceeeeec-cceeEeccccCCCCcc--hhhhh
Confidence            9999988763322111111    2244667799999999999975   35566666 9999999866221111  11133


Q ss_pred             CCCcEEEEEEccCC-CEEEEecCC-ceEEeeec
Q 022111          257 FKTPVWSVSWSLTG-NLLAVADAN-NVTLWKEA  287 (302)
Q Consensus       257 ~~~~v~~~~~spdg-~~la~~~~d-~i~~w~~~  287 (302)
                      ....|.+++|||.- ..++++..+ +|.+||..
T Consensus       440 ~~~~v~~vaWSptrpavF~~~d~~G~l~iWDLl  472 (555)
T KOG1587|consen  440 SPDYVTDVAWSPTRPAVFATVDGDGNLDIWDLL  472 (555)
T ss_pred             ccceeeeeEEcCcCceEEEEEcCCCceehhhhh
Confidence            44559999999965 678888877 79999974

>KOG0649 consensus WD40 repeat protein [General function prediction only]

Probab=99.66  E-value=2.1e-14  Score=114.11  Aligned_cols=202  Identities=15%  Similarity=0.214  Sum_probs=133.2

Q ss_pred             eEEEEeeCCCCCCEEEEEeCCCeEEEEEcCCCCc-------eeEEEEecCCCCCeeEEEecCCCCCcEEEEEecCCcEEE
Q 022111           58 VWQVAWAHPKFGSILASCSYDGQVIIWKEGNQND-------WTQAHTFNDHKSSVNSIAWAPHELGLSLACGSSDGNISV  130 (302)
Q Consensus        58 v~~v~~~~~~~~~~l~s~s~D~~i~iwd~~~~~~-------~~~~~~~~~h~~~i~~l~~~pd~~~~~l~sg~~d~~v~~  130 (302)
                      |.+-+++|+  +++|+.|+.+|+|-+..+++...       ...+..+++|.++|+.++|..+    .|++|++ |.|+=
T Consensus        13 vf~qa~sp~--~~~l~agn~~G~iav~sl~sl~s~sa~~~gk~~iv~eqahdgpiy~~~f~d~----~Lls~gd-G~V~g   85 (325)
T KOG0649|consen   13 VFAQAISPS--KQYLFAGNLFGDIAVLSLKSLDSGSAEPPGKLKIVPEQAHDGPIYYLAFHDD----FLLSGGD-GLVYG   85 (325)
T ss_pred             HHHHhhCCc--ceEEEEecCCCeEEEEEehhhhccccCCCCCcceeeccccCCCeeeeeeehh----heeeccC-ceEEE
Confidence            444566665  78999999999999998753211       1234456789999999999832    5666654 99998


Q ss_pred             EEecCCCC----eeeeeec-ccCC-----CCeEEEEeCCCCCCCceeecccCCCceeEEEeeCCCcEEEEEEecCccccc
Q 022111          131 FTATADGG----WDTTRID-QAHP-----VGVTSVSWAPAMAPGALVGLGLLDPVQKLASCGCDNTVKVWKMYNGIWKMD  200 (302)
Q Consensus       131 ~~~~~~~~----~~~~~~~-~~h~-----~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~D~~v~iwd~~~~~~~~~  200 (302)
                      |..+....    ..+.+.. ..|.     -.|+++...|..              .-++.++.|+.++-||+.++    +
T Consensus        86 w~W~E~~es~~~K~lwe~~~P~~~~~~evPeINam~ldP~e--------------nSi~~AgGD~~~y~~dlE~G----~  147 (325)
T KOG0649|consen   86 WEWNEEEESLATKRLWEVKIPMQVDAVEVPEINAMWLDPSE--------------NSILFAGGDGVIYQVDLEDG----R  147 (325)
T ss_pred             eeehhhhhhccchhhhhhcCccccCcccCCccceeEeccCC--------------CcEEEecCCeEEEEEEecCC----E
Confidence            87653221    0111110 0111     124445444432              34566668999999999998    3


Q ss_pred             cccccccCCCceeEEEe-eCCCCCCccEEEEEecCCeEEEEEeccCCcceee------eeec-cCCCcEEEEEEccCCCE
Q 022111          201 CFPALQMHSDWVRSVAW-APNLGLPKSTIASASQDGTVVIWTCAKEGEQWEG------RVLK-DFKTPVWSVSWSLTGNL  272 (302)
Q Consensus       201 ~~~~~~~h~~~v~~v~~-~p~~~~~~~~l~s~s~D~~i~iwd~~~~~~~~~~------~~~~-~~~~~v~~~~~spdg~~  272 (302)
                      ..+++.||++.|.++.- +.+     ..|+||++||++||||+++.+....-      +.+. +....|.+++-  +...
T Consensus       148 i~r~~rGHtDYvH~vv~R~~~-----~qilsG~EDGtvRvWd~kt~k~v~~ie~yk~~~~lRp~~g~wigala~--~edW  220 (325)
T KOG0649|consen  148 IQREYRGHTDYVHSVVGRNAN-----GQILSGAEDGTVRVWDTKTQKHVSMIEPYKNPNLLRPDWGKWIGALAV--NEDW  220 (325)
T ss_pred             EEEEEcCCcceeeeeeecccC-----cceeecCCCccEEEEeccccceeEEeccccChhhcCcccCceeEEEec--cCce
Confidence            45678999999999987 333     46999999999999999875432110      1111 12334656654  5579


Q ss_pred             EEEecCCceEEeeecCCce
Q 022111          273 LAVADANNVTLWKEAVDGE  291 (302)
Q Consensus       273 la~~~~d~i~~w~~~~~~~  291 (302)
                      |++|+..++.||....+..
T Consensus       221 lvCGgGp~lslwhLrsse~  239 (325)
T KOG0649|consen  221 LVCGGGPKLSLWHLRSSES  239 (325)
T ss_pred             EEecCCCceeEEeccCCCc
Confidence            9999888999998754433

>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.66  E-value=8.7e-15  Score=124.24  Aligned_cols=206  Identities=19%  Similarity=0.150  Sum_probs=140.2

Q ss_pred             EEEEeeCCCCCCEEEEEeCCCeEEEEEcCCCCceeEEEEecCCCCCeeEEEecCCCCCcEEEEEecCCcEEEEEecCCCC
Q 022111           59 WQVAWAHPKFGSILASCSYDGQVIIWKEGNQNDWTQAHTFNDHKSSVNSIAWAPHELGLSLACGSSDGNISVFTATADGG  138 (302)
Q Consensus        59 ~~v~~~~~~~~~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~h~~~i~~l~~~pd~~~~~l~sg~~d~~v~~~~~~~~~~  138 (302)
                      ..++|+.+  |..|++++.||++|+|+..+..   .......|...|.++.|+||  |+.|++-+.| ..++|+..++..
T Consensus       148 k~vaf~~~--gs~latgg~dg~lRv~~~Ps~~---t~l~e~~~~~eV~DL~FS~d--gk~lasig~d-~~~VW~~~~g~~  219 (398)
T KOG0771|consen  148 KVVAFNGD--GSKLATGGTDGTLRVWEWPSML---TILEEIAHHAEVKDLDFSPD--GKFLASIGAD-SARVWSVNTGAA  219 (398)
T ss_pred             eEEEEcCC--CCEeeeccccceEEEEecCcch---hhhhhHhhcCccccceeCCC--CcEEEEecCC-ceEEEEeccCch
Confidence            45788753  7899999999999999965542   33445568899999999999  7899999999 999999986643


Q ss_pred             eeeeeecccCCCCeEEEEeCCCCCCCceeecccCCCceeEE-EeeCCCcEEEEEEecCccc-cccccccccCCCceeEEE
Q 022111          139 WDTTRIDQAHPVGVTSVSWAPAMAPGALVGLGLLDPVQKLA-SCGCDNTVKVWKMYNGIWK-MDCFPALQMHSDWVRSVA  216 (302)
Q Consensus       139 ~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~-s~~~D~~v~iwd~~~~~~~-~~~~~~~~~h~~~v~~v~  216 (302)
                      +..... ..-......+.|+.+...          +.-+++ .-..-+.|+.||+....+. +-.......-...|.+++
T Consensus       220 ~a~~t~-~~k~~~~~~cRF~~d~~~----------~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~~~~~siSsl~  288 (398)
T KOG0771|consen  220 LARKTP-FSKDEMFSSCRFSVDNAQ----------ETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKIKRFKSISSLA  288 (398)
T ss_pred             hhhcCC-cccchhhhhceecccCCC----------ceEEEEEecCCCCceeEEEeeeeccccccchhhhhhccCcceeEE
Confidence            321111 122233455666544321          112333 3345667888887533221 001111222234599999


Q ss_pred             eeCCCCCCccEEEEEecCCeEEEEEeccCCcceeeeeeccCCCcEEEEEEccCCCEEEEecCC-ceEEeeecCC
Q 022111          217 WAPNLGLPKSTIASASQDGTVVIWTCAKEGEQWEGRVLKDFKTPVWSVSWSLTGNLLAVADAN-NVTLWKEAVD  289 (302)
Q Consensus       217 ~~p~~~~~~~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~la~~~~d-~i~~w~~~~~  289 (302)
                      .+++|    +++|-|+.||.|-|++..+...  .......|..-|..+.|+||.++++..+.+ ...+...+.+
T Consensus       289 VS~dG----kf~AlGT~dGsVai~~~~~lq~--~~~vk~aH~~~VT~ltF~Pdsr~~~svSs~~~~~v~~l~vd  356 (398)
T KOG0771|consen  289 VSDDG----KFLALGTMDGSVAIYDAKSLQR--LQYVKEAHLGFVTGLTFSPDSRYLASVSSDNEAAVTKLAVD  356 (398)
T ss_pred             EcCCC----cEEEEeccCCcEEEEEeceeee--eEeehhhheeeeeeEEEcCCcCcccccccCCceeEEEEeec
Confidence            99985    8899999999999999876421  112335677789999999999999988887 6888887653

>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]

Probab=99.65  E-value=2.7e-14  Score=127.64  Aligned_cols=208  Identities=21%  Similarity=0.286  Sum_probs=144.9

Q ss_pred             ccccccccceeEEEEccCCCEEEEeeCCCcEEEEeecCCCceEEEEecCcccCeEEEEeeC-------------------
Q 022111            5 KIETGHEDTVHDVAMDFYGKRLATASSDSSIKIIGLSNSASQHLATLKGHRGPVWQVAWAH-------------------   65 (302)
Q Consensus         5 ~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~-------------------   65 (302)
                      +++.||++.|++++|+.||+.+|||+.|+.|.+|+..-+   -+.. ..|.+.|.|+.|+|                   
T Consensus        47 qtLKgHKDtVycVAys~dGkrFASG~aDK~VI~W~~klE---G~Lk-YSH~D~IQCMsFNP~~h~LasCsLsdFglWS~~  122 (1081)
T KOG1538|consen   47 QPLKGHKDTVYCVAYAKDGKRFASGSADKSVIIWTSKLE---GILK-YSHNDAIQCMSFNPITHQLASCSLSDFGLWSPE  122 (1081)
T ss_pred             cccccccceEEEEEEccCCceeccCCCceeEEEeccccc---ceee-eccCCeeeEeecCchHHHhhhcchhhccccChh
Confidence            567799999999999999999999999999999975321   1111 13444444444432                   


Q ss_pred             ------------------CCCCCEEEEEeCCCeEEEEEcCCCCceeEEEEecCCCCCeeEEEecCCCC---CcEEEEEec
Q 022111           66 ------------------PKFGSILASCSYDGQVIIWKEGNQNDWTQAHTFNDHKSSVNSIAWAPHEL---GLSLACGSS  124 (302)
Q Consensus        66 ------------------~~~~~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~h~~~i~~l~~~pd~~---~~~l~sg~~  124 (302)
                                        .++|++++-|-.||+|.|-+-.. .+...+..-.+.+.+|.+++|+|...   ...++..++
T Consensus       123 qK~V~K~kss~R~~~CsWtnDGqylalG~~nGTIsiRNk~g-Eek~~I~Rpgg~Nspiwsi~~~p~sg~G~~di~aV~DW  201 (1081)
T KOG1538|consen  123 QKSVSKHKSSSRIICCSWTNDGQYLALGMFNGTISIRNKNG-EEKVKIERPGGSNSPIWSICWNPSSGEGRNDILAVADW  201 (1081)
T ss_pred             hhhHHhhhhheeEEEeeecCCCcEEEEeccCceEEeecCCC-CcceEEeCCCCCCCCceEEEecCCCCCCccceEEEEec
Confidence                              13578888888888888864322 12123334456789999999999742   247888899


Q ss_pred             CCcEEEEEecCCCCeeeeeecccCCCCeEEEEeCCCCCCCceeecccCCCceeEEEeeCCCcEEEEEEecCccccccccc
Q 022111          125 DGNISVFTATADGGWDTTRIDQAHPVGVTSVSWAPAMAPGALVGLGLLDPVQKLASCGCDNTVKVWKMYNGIWKMDCFPA  204 (302)
Q Consensus       125 d~~v~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~D~~v~iwd~~~~~~~~~~~~~  204 (302)
                      ..++.+|.++..   .+.. ...-...-.++.+.|              +|.+++.||.|+.+++|--. +    -.+.+
T Consensus       202 ~qTLSFy~LsG~---~Igk-~r~L~FdP~CisYf~--------------NGEy~LiGGsdk~L~~fTR~-G----vrLGT  258 (1081)
T KOG1538|consen  202 GQTLSFYQLSGK---QIGK-DRALNFDPCCISYFT--------------NGEYILLGGSDKQLSLFTRD-G----VRLGT  258 (1081)
T ss_pred             cceeEEEEecce---eecc-cccCCCCchhheecc--------------CCcEEEEccCCCceEEEeec-C----eEEee
Confidence            999999877521   1000 001122234555555              46899999999999998643 3    23445


Q ss_pred             cccCCCceeEEEeeCCCCCCccEEEEEecCCeEEEEEecc
Q 022111          205 LQMHSDWVRSVAWAPNLGLPKSTIASASQDGTVVIWTCAK  244 (302)
Q Consensus       205 ~~~h~~~v~~v~~~p~~~~~~~~l~s~s~D~~i~iwd~~~  244 (302)
                      +.....||..++..|++    ++++.|..||+|-.|++..
T Consensus       259 vg~~D~WIWtV~~~PNs----Q~v~~GCqDGTiACyNl~f  294 (1081)
T KOG1538|consen  259 VGEQDSWIWTVQAKPNS----QYVVVGCQDGTIACYNLIF  294 (1081)
T ss_pred             ccccceeEEEEEEccCC----ceEEEEEccCeeehhhhHH
Confidence            55678899999999995    7899999999999999753

>KOG1310 consensus WD40 repeat protein [General function prediction only]

Probab=99.64  E-value=9.2e-15  Score=127.90  Aligned_cols=222  Identities=17%  Similarity=0.217  Sum_probs=153.8

Q ss_pred             cccccccccceeEEEEccCCCEEEEeeCCCcEEEEeecCCCceEEEE-ecCcccCeEEEEeeCCCCCCEEEEEeCCCeEE
Q 022111            4 QKIETGHEDTVHDVAMDFYGKRLATASSDSSIKIIGLSNSASQHLAT-LKGHRGPVWQVAWAHPKFGSILASCSYDGQVI   82 (302)
Q Consensus         4 ~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~lw~~~~~~~~~~~~-~~~h~~~v~~v~~~~~~~~~~l~s~s~D~~i~   82 (302)
                      ++.+.||++=|+++.|+.+|.+|+||++|-.+.|||....  +.+.. -.||.+.|.++.|.|-....+|+||+.|+.|+
T Consensus        43 E~eL~GH~GCVN~LeWn~dG~lL~SGSDD~r~ivWd~~~~--KllhsI~TgHtaNIFsvKFvP~tnnriv~sgAgDk~i~  120 (758)
T KOG1310|consen   43 EAELTGHTGCVNCLEWNADGELLASGSDDTRLIVWDPFEY--KLLHSISTGHTANIFSVKFVPYTNNRIVLSGAGDKLIK  120 (758)
T ss_pred             hhhhccccceecceeecCCCCEEeecCCcceEEeecchhc--ceeeeeecccccceeEEeeeccCCCeEEEeccCcceEE
Confidence            4557899999999999999999999999999999998643  33333 36899999999998876677999999999999


Q ss_pred             EEEcCCCC-------ceeEEEEecCCCCCeeEEEecCCCCCcEEEEEecCCcEEEEEecCCCCeeeee-----ecccC--
Q 022111           83 IWKEGNQN-------DWTQAHTFNDHKSSVNSIAWAPHELGLSLACGSSDGNISVFTATADGGWDTTR-----IDQAH--  148 (302)
Q Consensus        83 iwd~~~~~-------~~~~~~~~~~h~~~i~~l~~~pd~~~~~l~sg~~d~~v~~~~~~~~~~~~~~~-----~~~~h--  148 (302)
                      ++|+...+       ...+...+.-|...|.-++-.|+.+ ..+-+++.||+++-||++.........     +..-+  
T Consensus       121 lfdl~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~P-htfwsasEDGtirQyDiREph~c~p~~~~~~~l~ny~~~  199 (758)
T KOG1310|consen  121 LFDLDSSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNGP-HTFWSASEDGTIRQYDIREPHVCNPDEDCPSILVNYNPQ  199 (758)
T ss_pred             EEecccccccccccCccchhhhhhhhhhhhhheecCCCCC-ceEEEecCCcceeeecccCCccCCccccccHHHHHhchh
Confidence            99986421       1223445667899999999988742 578899999999999998643221110     00001  


Q ss_pred             CCCeEEEEeCCCCCCCceeecccCCCceeEEEeeCCCcEEEEEEecC------ccc-cc-------cccccc-cCC----
Q 022111          149 PVGVTSVSWAPAMAPGALVGLGLLDPVQKLASCGCDNTVKVWKMYNG------IWK-MD-------CFPALQ-MHS----  209 (302)
Q Consensus       149 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~D~~v~iwd~~~~------~~~-~~-------~~~~~~-~h~----  209 (302)
                      .....++..+|..             ..+|+.|+.|...++||.+.-      .++ ..       |++.|. +|-    
T Consensus       200 lielk~ltisp~r-------------p~~laVGgsdpfarLYD~Rr~lks~~s~~~~~~~pp~~~~cv~yf~p~hlkn~~  266 (758)
T KOG1310|consen  200 LIELKCLTISPSR-------------PYYLAVGGSDPFARLYDRRRVLKSFRSDGTMNTCPPKDCRCVRYFSPGHLKNSQ  266 (758)
T ss_pred             hheeeeeeecCCC-------------CceEEecCCCchhhhhhhhhhccCCCCCccccCCCCcccchhheecCccccCcc
Confidence            1234556666643             368999999999999994321      011 01       122221 222    


Q ss_pred             ----Cc---eeEEEeeCCCCCCccEEEEEecCCeEEEEEeccC
Q 022111          210 ----DW---VRSVAWAPNLGLPKSTIASASQDGTVVIWTCAKE  245 (302)
Q Consensus       210 ----~~---v~~v~~~p~~~~~~~~l~s~s~D~~i~iwd~~~~  245 (302)
                          ..   ++-+.|+|+|   ...|++-+.+ .|.++|+...
T Consensus       267 gn~~~~~~~~t~vtfnpNG---tElLvs~~gE-hVYlfdvn~~  305 (758)
T KOG1310|consen  267 GNLDRYITCCTYVTFNPNG---TELLVSWGGE-HVYLFDVNED  305 (758)
T ss_pred             cccccceeeeEEEEECCCC---cEEEEeeCCe-EEEEEeecCC
Confidence                12   3457889986   2455555444 5889998653

>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]

Probab=99.63  E-value=1.1e-14  Score=127.17  Aligned_cols=239  Identities=17%  Similarity=0.228  Sum_probs=153.8

Q ss_pred             ccccceeEEEEccCCCEEEEeeCCCcEEEEeecCCCceEEEEecCcccCeEEEEe------eCCCCCCEEEEEeCCCeEE
Q 022111            9 GHEDTVHDVAMDFYGKRLATASSDSSIKIIGLSNSASQHLATLKGHRGPVWQVAW------AHPKFGSILASCSYDGQVI   82 (302)
Q Consensus         9 ~h~~~v~~~~~s~~~~~l~s~~~d~~v~lw~~~~~~~~~~~~~~~h~~~v~~v~~------~~~~~~~~l~s~s~D~~i~   82 (302)
                      .|...|-++.|+.+...+.+++++..+..|++.+...+.+ .+.  ...|...-+      -.......++.++.||.+.
T Consensus        12 r~~e~vc~v~w~~~eei~~~~dDh~~~~~~~~~~~s~~~~-~~p--~df~pt~~h~~~rs~~~g~~~d~~~i~s~DGkf~   88 (737)
T KOG1524|consen   12 RNSEKVCCVDWSSNEEIYFVSDDHQIFKWSDVSRDSVEVA-KLP--DDFVPTDMHLGGRSSGGGKGSDTLLICSNDGRFV   88 (737)
T ss_pred             ccceeEEeecccccceEEEeccCceEEEeecccchhhhhh-hCC--cccCCccccccccccCCCCCcceEEEEcCCceEE
Confidence            5667777788888777776665554455556654332211 111  111111111      0011245788999999999


Q ss_pred             EEEcCCCCceeEEEEecCCCCCeeEEEecCCCCCcEEEEEecCCcEEEEEecCCCCeeeeeecccCCCCeEEEEeCCCCC
Q 022111           83 IWKEGNQNDWTQAHTFNDHKSSVNSIAWAPHELGLSLACGSSDGNISVFTATADGGWDTTRIDQAHPVGVTSVSWAPAMA  162 (302)
Q Consensus        83 iwd~~~~~~~~~~~~~~~h~~~i~~l~~~pd~~~~~l~sg~~d~~v~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~  162 (302)
                      |..-..    .-......|.+.|.+-.|+||  |.-|++.+.||.|++|.-.  +... +.+- ....+|.|++|.|+. 
T Consensus        89 il~k~~----rVE~sv~AH~~A~~~gRW~~d--GtgLlt~GEDG~iKiWSrs--GMLR-Stl~-Q~~~~v~c~~W~p~S-  157 (737)
T KOG1524|consen   89 ILNKSA----RVERSISAHAAAISSGRWSPD--GAGLLTAGEDGVIKIWSRS--GMLR-STVV-QNEESIRCARWAPNS-  157 (737)
T ss_pred             Eecccc----hhhhhhhhhhhhhhhcccCCC--CceeeeecCCceEEEEecc--chHH-HHHh-hcCceeEEEEECCCC-
Confidence            975321    123356679999999999999  6679999999999999743  2221 1111 235679999999974 


Q ss_pred             CCceeecccCCCceeEEEeeCCCcEEEEEEecCccccccccccccCCCceeEEEeeCCCCCCccEEEEEecCCeEEEEEe
Q 022111          163 PGALVGLGLLDPVQKLASCGCDNTVKVWKMYNGIWKMDCFPALQMHSDWVRSVAWAPNLGLPKSTIASASQDGTVVIWTC  242 (302)
Q Consensus       163 ~~~~~~~~~~~~~~~l~s~~~D~~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~l~s~s~D~~i~iwd~  242 (302)
                                  +..+.+.+  +.+.|=-+...    ..+.....|.+-|.|++|+|..    +.|+||++|-..+|||.
T Consensus       158 ------------~~vl~c~g--~h~~IKpL~~n----~k~i~WkAHDGiiL~~~W~~~s----~lI~sgGED~kfKvWD~  215 (737)
T KOG1524|consen  158 ------------NSIVFCQG--GHISIKPLAAN----SKIIRWRAHDGLVLSLSWSTQS----NIIASGGEDFRFKIWDA  215 (737)
T ss_pred             ------------CceEEecC--CeEEEeecccc----cceeEEeccCcEEEEeecCccc----cceeecCCceeEEeecc
Confidence                        23333333  34444333222    1123467899999999999985    78999999999999997


Q ss_pred             ccCCcceeeeeeccCCCcEEEEEEccCCCEEEEecCCceEEeeecC
Q 022111          243 AKEGEQWEGRVLKDFKTPVWSVSWSLTGNLLAVADANNVTLWKEAV  288 (302)
Q Consensus       243 ~~~~~~~~~~~~~~~~~~v~~~~~spdg~~la~~~~d~i~~w~~~~  288 (302)
                      .....  -  ....++-+|.+++|+|| +.+++++.+.+++=....
T Consensus       216 ~G~~L--f--~S~~~ey~ITSva~npd-~~~~v~S~nt~R~~~p~~  256 (737)
T KOG1524|consen  216 QGANL--F--TSAAEEYAITSVAFNPE-KDYLLWSYNTARFSSPRV  256 (737)
T ss_pred             cCccc--c--cCChhccceeeeeeccc-cceeeeeeeeeeecCCCc
Confidence            64211  0  11345668999999999 788899888887544433

>PRK11028 6-phosphogluconolactonase; Provisional

Probab=99.63  E-value=3.4e-12  Score=111.94  Aligned_cols=239  Identities=16%  Similarity=0.190  Sum_probs=141.4

Q ss_pred             EEEeeCCCcEEEEeecC-CCceEEEEecCcccCeEEEEeeCCCCCCEEEEE-eCCCeEEEEEcCCCCceeEEEEecCCCC
Q 022111           26 LATASSDSSIKIIGLSN-SASQHLATLKGHRGPVWQVAWAHPKFGSILASC-SYDGQVIIWKEGNQNDWTQAHTFNDHKS  103 (302)
Q Consensus        26 l~s~~~d~~v~lw~~~~-~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~-s~D~~i~iwd~~~~~~~~~~~~~~~h~~  103 (302)
                      .++.+.|+.|++|++.. +....+..+. +.+....++++++  +++|+.+ ..++.|.+|++............. ..+
T Consensus         5 y~~~~~~~~I~~~~~~~~g~l~~~~~~~-~~~~~~~l~~spd--~~~lyv~~~~~~~i~~~~~~~~g~l~~~~~~~-~~~   80 (330)
T PRK11028          5 YIASPESQQIHVWNLNHEGALTLLQVVD-VPGQVQPMVISPD--KRHLYVGVRPEFRVLSYRIADDGALTFAAESP-LPG   80 (330)
T ss_pred             EEEcCCCCCEEEEEECCCCceeeeeEEe-cCCCCccEEECCC--CCEEEEEECCCCcEEEEEECCCCceEEeeeec-CCC
Confidence            44457799999999953 2233445553 2344567888764  6776555 458889999986332233333332 233


Q ss_pred             CeeEEEecCCCCCcEEEEEe-cCCcEEEEEecCCCCee-eeeecccCCCCeEEEEeCCCCCCCceeecccCCCceeE-EE
Q 022111          104 SVNSIAWAPHELGLSLACGS-SDGNISVFTATADGGWD-TTRIDQAHPVGVTSVSWAPAMAPGALVGLGLLDPVQKL-AS  180 (302)
Q Consensus       104 ~i~~l~~~pd~~~~~l~sg~-~d~~v~~~~~~~~~~~~-~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~l-~s  180 (302)
                      ....++++|+  ++++++++ .++.|.+|++.+.+... ..... .+......+.++|++              +++ ++
T Consensus        81 ~p~~i~~~~~--g~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~-~~~~~~~~~~~~p~g--------------~~l~v~  143 (330)
T PRK11028         81 SPTHISTDHQ--GRFLFSASYNANCVSVSPLDKDGIPVAPIQII-EGLEGCHSANIDPDN--------------RTLWVP  143 (330)
T ss_pred             CceEEEECCC--CCEEEEEEcCCCeEEEEEECCCCCCCCceeec-cCCCcccEeEeCCCC--------------CEEEEe
Confidence            5678999998  55566555 48899999986433211 11111 122223455666653              444 56


Q ss_pred             eeCCCcEEEEEEecCccccccc--cccc-cCCCceeEEEeeCCCCCCccEEEEEec-CCeEEEEEeccCCccee--eee-
Q 022111          181 CGCDNTVKVWKMYNGIWKMDCF--PALQ-MHSDWVRSVAWAPNLGLPKSTIASASQ-DGTVVIWTCAKEGEQWE--GRV-  253 (302)
Q Consensus       181 ~~~D~~v~iwd~~~~~~~~~~~--~~~~-~h~~~v~~v~~~p~~~~~~~~l~s~s~-D~~i~iwd~~~~~~~~~--~~~-  253 (302)
                      ...++.|.+||+.+.. .+...  .... ........+.|+|++    +++.++.+ +++|.+|+++.......  ..+ 
T Consensus       144 ~~~~~~v~v~d~~~~g-~l~~~~~~~~~~~~g~~p~~~~~~pdg----~~lyv~~~~~~~v~v~~~~~~~~~~~~~~~~~  218 (330)
T PRK11028        144 CLKEDRIRLFTLSDDG-HLVAQEPAEVTTVEGAGPRHMVFHPNQ----QYAYCVNELNSSVDVWQLKDPHGEIECVQTLD  218 (330)
T ss_pred             eCCCCEEEEEEECCCC-cccccCCCceecCCCCCCceEEECCCC----CEEEEEecCCCEEEEEEEeCCCCCEEEEEEEe
Confidence            6678999999997521 11100  0000 012335789999996    66666665 89999999974211111  011 


Q ss_pred             -e-ccCCC--cEEEEEEccCCCEEEEecCC--ceEEeeecCCc
Q 022111          254 -L-KDFKT--PVWSVSWSLTGNLLAVADAN--NVTLWKEAVDG  290 (302)
Q Consensus       254 -~-~~~~~--~v~~~~~spdg~~la~~~~d--~i~~w~~~~~~  290 (302)
                       . .....  ....+.|+|+|++|.++.+.  .|.+|+...++
T Consensus       219 ~~p~~~~~~~~~~~i~~~pdg~~lyv~~~~~~~I~v~~i~~~~  261 (330)
T PRK11028        219 MMPADFSDTRWAADIHITPDGRHLYACDRTASLISVFSVSEDG  261 (330)
T ss_pred             cCCCcCCCCccceeEEECCCCCEEEEecCCCCeEEEEEEeCCC
Confidence             0 11111  23358899999999888653  69999986544

>PRK01742 tolB translocation protein TolB; Provisional

Probab=99.62  E-value=1.3e-13  Score=125.00  Aligned_cols=212  Identities=18%  Similarity=0.251  Sum_probs=135.3

Q ss_pred             CCcEEEEeecCCCceEEEEecCcccCeEEEEeeCCCCCCEEEEEeCC---CeEEEEEcCCCCceeEEEEecCCCCCeeEE
Q 022111           32 DSSIKIIGLSNSASQHLATLKGHRGPVWQVAWAHPKFGSILASCSYD---GQVIIWKEGNQNDWTQAHTFNDHKSSVNSI  108 (302)
Q Consensus        32 d~~v~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~s~D---~~i~iwd~~~~~~~~~~~~~~~h~~~i~~l  108 (302)
                      +.+|.+||.+...   ...+..|...+...+|+|+  |++|+.++.+   ..|.+||+.++.. ..+..+.+|   ...+
T Consensus       183 ~~~i~i~d~dg~~---~~~lt~~~~~v~~p~wSPD--G~~la~~s~~~~~~~i~i~dl~tg~~-~~l~~~~g~---~~~~  253 (429)
T PRK01742        183 PYEVRVADYDGFN---QFIVNRSSQPLMSPAWSPD--GSKLAYVSFENKKSQLVVHDLRSGAR-KVVASFRGH---NGAP  253 (429)
T ss_pred             eEEEEEECCCCCC---ceEeccCCCccccceEcCC--CCEEEEEEecCCCcEEEEEeCCCCce-EEEecCCCc---cCce
Confidence            4689999986533   3456678888999999875  8888887654   4699999876532 233334443   3468


Q ss_pred             EecCCCCCcEEEEE-ecCCcEEEEEecCCCCeeeeeecccCCCCeEEEEeCCCCCCCceeecccCCCceeEE-EeeCCCc
Q 022111          109 AWAPHELGLSLACG-SSDGNISVFTATADGGWDTTRIDQAHPVGVTSVSWAPAMAPGALVGLGLLDPVQKLA-SCGCDNT  186 (302)
Q Consensus       109 ~~~pd~~~~~l~sg-~~d~~v~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~-s~~~D~~  186 (302)
                      +|+||  |..|+.+ +.++.+.||.+...+. ....+. .+...+..+.|+|++              +.|+ ++..++.
T Consensus       254 ~wSPD--G~~La~~~~~~g~~~Iy~~d~~~~-~~~~lt-~~~~~~~~~~wSpDG--------------~~i~f~s~~~g~  315 (429)
T PRK01742        254 AFSPD--GSRLAFASSKDGVLNIYVMGANGG-TPSQLT-SGAGNNTEPSWSPDG--------------QSILFTSDRSGS  315 (429)
T ss_pred             eECCC--CCEEEEEEecCCcEEEEEEECCCC-CeEeec-cCCCCcCCEEECCCC--------------CEEEEEECCCCC
Confidence            99998  6667665 4688877775542221 122332 344557788999874              4444 4456788


Q ss_pred             EEEEEEecCccccccccccccCCCceeEEEeeCCCCCCccEEEEEecCCeEEEEEeccCCcceeeeeeccCCCcEEEEEE
Q 022111          187 VKVWKMYNGIWKMDCFPALQMHSDWVRSVAWAPNLGLPKSTIASASQDGTVVIWTCAKEGEQWEGRVLKDFKTPVWSVSW  266 (302)
Q Consensus       187 v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~  266 (302)
                      .+||++.........   + .+..  .+.+|+||+    +.|+..+.++.+ +||+.....  . .+...+  ...+++|
T Consensus       316 ~~I~~~~~~~~~~~~---l-~~~~--~~~~~SpDG----~~ia~~~~~~i~-~~Dl~~g~~--~-~lt~~~--~~~~~~~  379 (429)
T PRK01742        316 PQVYRMSASGGGASL---V-GGRG--YSAQISADG----KTLVMINGDNVV-KQDLTSGST--E-VLSSTF--LDESPSI  379 (429)
T ss_pred             ceEEEEECCCCCeEE---e-cCCC--CCccCCCCC----CEEEEEcCCCEE-EEECCCCCe--E-EecCCC--CCCCceE
Confidence            999988643211111   1 2333  457899996    678777776654 588765321  1 111122  2356789


Q ss_pred             ccCCCEEEEecCC-ceEEeee
Q 022111          267 SLTGNLLAVADAN-NVTLWKE  286 (302)
Q Consensus       267 spdg~~la~~~~d-~i~~w~~  286 (302)
                      +|||++|+.++.+ .+.+|..
T Consensus       380 sPdG~~i~~~s~~g~~~~l~~  400 (429)
T PRK01742        380 SPNGIMIIYSSTQGLGKVLQL  400 (429)
T ss_pred             CCCCCEEEEEEcCCCceEEEE
Confidence            9999999998776 6777764

>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]

Probab=99.61  E-value=9.2e-14  Score=129.79  Aligned_cols=251  Identities=18%  Similarity=0.199  Sum_probs=155.6

Q ss_pred             cceeEEEEc--cCCCEEEEeeCCCcEEEEeecCC---CceEEEE---ecCcc----cCeEEEEeeCCCCCCEEEEEeCCC
Q 022111           12 DTVHDVAMD--FYGKRLATASSDSSIKIIGLSNS---ASQHLAT---LKGHR----GPVWQVAWAHPKFGSILASCSYDG   79 (302)
Q Consensus        12 ~~v~~~~~s--~~~~~l~s~~~d~~v~lw~~~~~---~~~~~~~---~~~h~----~~v~~v~~~~~~~~~~l~s~s~D~   79 (302)
                      ..|+++.+-  -|...+++|+.||.||||+-...   +.+.+..   +.++.    +.-.-+.|. ...|.++++| .-+
T Consensus      1110 t~Vs~l~liNe~D~aLlLtas~dGvIRIwk~y~~~~~~~eLVTaw~~Ls~~~~~~r~~~~v~dWq-Q~~G~Ll~tG-d~r 1187 (1387)
T KOG1517|consen 1110 TRVSDLELINEQDDALLLTASSDGVIRIWKDYADKWKKPELVTAWSSLSDQLPGARGTGLVVDWQ-QQSGHLLVTG-DVR 1187 (1387)
T ss_pred             CccceeeeecccchhheeeeccCceEEEecccccccCCceeEEeeccccccCccCCCCCeeeehh-hhCCeEEecC-Cee
Confidence            457777763  23468899999999999974321   2222221   22221    111224553 2346555554 478


Q ss_pred             eEEEEEcCCCCceeEEEEec-CCCCCeeEEEecCCCCCcEEEEEecCCcEEEEEecCCCCeeeeeecccCCCC--eEEEE
Q 022111           80 QVIIWKEGNQNDWTQAHTFN-DHKSSVNSIAWAPHELGLSLACGSSDGNISVFTATADGGWDTTRIDQAHPVG--VTSVS  156 (302)
Q Consensus        80 ~i~iwd~~~~~~~~~~~~~~-~h~~~i~~l~~~pd~~~~~l~sg~~d~~v~~~~~~~~~~~~~~~~~~~h~~~--v~~~~  156 (302)
                      .|+|||.....   ..+.+. +-..-|+++.-.-. .|.++++|-.||.|++||.+....-........|...  |..+.
T Consensus      1188 ~IRIWDa~~E~---~~~diP~~s~t~vTaLS~~~~-~gn~i~AGfaDGsvRvyD~R~a~~ds~v~~~R~h~~~~~Iv~~s 1263 (1387)
T KOG1517|consen 1188 SIRIWDAHKEQ---VVADIPYGSSTLVTALSADLV-HGNIIAAGFADGSVRVYDRRMAPPDSLVCVYREHNDVEPIVHLS 1263 (1387)
T ss_pred             EEEEEecccce---eEeecccCCCccceeeccccc-CCceEEEeecCCceEEeecccCCccccceeecccCCcccceeEE
Confidence            99999986532   222221 23345565543322 3679999999999999998854321222222356554  77777


Q ss_pred             eCCCCCCCceeecccCCCceeEEEeeCCCcEEEEEEecCccccccccccccCC---CceeEEEeeCCCCCCccEEEEEec
Q 022111          157 WAPAMAPGALVGLGLLDPVQKLASCGCDNTVKVWKMYNGIWKMDCFPALQMHS---DWVRSVAWAPNLGLPKSTIASASQ  233 (302)
Q Consensus       157 ~~~~~~~~~~~~~~~~~~~~~l~s~~~D~~v~iwd~~~~~~~~~~~~~~~~h~---~~v~~v~~~p~~~~~~~~l~s~s~  233 (302)
                      +.+.+.             ..|+||+.||.|++||++... . ....+...|.   +..+++..+++.    ..||+|+.
T Consensus      1264 lq~~G~-------------~elvSgs~~G~I~~~DlR~~~-~-e~~~~iv~~~~yGs~lTal~VH~ha----piiAsGs~ 1324 (1387)
T KOG1517|consen 1264 LQRQGL-------------GELVSGSQDGDIQLLDLRMSS-K-ETFLTIVAHWEYGSALTALTVHEHA----PIIASGSA 1324 (1387)
T ss_pred             eecCCC-------------cceeeeccCCeEEEEecccCc-c-cccceeeeccccCccceeeeeccCC----CeeeecCc
Confidence            766431             369999999999999998631 1 1111222232   247889888874    78999998


Q ss_pred             CCeEEEEEeccCCcc-ee--eeeeccCCCcEEEEEEccCCCEEEEecCC-ceEEeeecC
Q 022111          234 DGTVVIWTCAKEGEQ-WE--GRVLKDFKTPVWSVSWSLTGNLLAVADAN-NVTLWKEAV  288 (302)
Q Consensus       234 D~~i~iwd~~~~~~~-~~--~~~~~~~~~~v~~~~~spdg~~la~~~~d-~i~~w~~~~  288 (302)
                       +.|+||++..+... ..  ..++..-...+.+++|+|---+||+|..| .|.||....
T Consensus      1325 -q~ikIy~~~G~~l~~~k~n~~F~~q~~gs~scL~FHP~~~llAaG~~Ds~V~iYs~~k 1382 (1387)
T KOG1517|consen 1325 -QLIKIYSLSGEQLNIIKYNPGFMGQRIGSVSCLAFHPHRLLLAAGSADSTVSIYSCEK 1382 (1387)
T ss_pred             -ceEEEEecChhhhcccccCcccccCcCCCcceeeecchhHhhhhccCCceEEEeecCC
Confidence             99999998753210 00  11112223457899999998889999888 699998643

>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]

Probab=99.61  E-value=4.2e-14  Score=124.86  Aligned_cols=221  Identities=21%  Similarity=0.318  Sum_probs=144.2

Q ss_pred             EEEEecCcccCeEEEEeeCCCCCCEEEEEeCCCeEEEEEcCCCCceeEEEEecCCCCCeeEEEecCCCCCcEEEEEecCC
Q 022111           47 HLATLKGHRGPVWQVAWAHPKFGSILASCSYDGQVIIWKEGNQNDWTQAHTFNDHKSSVNSIAWAPHELGLSLACGSSDG  126 (302)
Q Consensus        47 ~~~~~~~h~~~v~~v~~~~~~~~~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~h~~~i~~l~~~pd~~~~~l~sg~~d~  126 (302)
                      +-..+.||++.|++|+..+  .|.+||+|+.||++|||.+.++   .++.++. -.+.|.|++|+|...--.||.+-.. 
T Consensus       392 ~~lvyrGHtg~Vr~iSvdp--~G~wlasGsdDGtvriWEi~Tg---Rcvr~~~-~d~~I~~vaw~P~~~~~vLAvA~~~-  464 (733)
T KOG0650|consen  392 CALVYRGHTGLVRSISVDP--SGEWLASGSDDGTVRIWEIATG---RCVRTVQ-FDSEIRSVAWNPLSDLCVLAVAVGE-  464 (733)
T ss_pred             eeeeEeccCCeEEEEEecC--CcceeeecCCCCcEEEEEeecc---eEEEEEe-ecceeEEEEecCCCCceeEEEEecC-
Confidence            3456789999999999865  4899999999999999999886   4666655 4568999999998543344444333 


Q ss_pred             cEEEEEecCC--------------C-----------Ceeee---------eecccCCCCeEEEEeCCCCCCC--------
Q 022111          127 NISVFTATAD--------------G-----------GWDTT---------RIDQAHPVGVTSVSWAPAMAPG--------  164 (302)
Q Consensus       127 ~v~~~~~~~~--------------~-----------~~~~~---------~~~~~h~~~v~~~~~~~~~~~~--------  164 (302)
                      .+.|-+-.-+              .           .|...         .+...|...|+.+.|+..+.--        
T Consensus       465 ~~~ivnp~~G~~~e~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHrkGDYlatV~~~~~  544 (733)
T KOG0650|consen  465 CVLIVNPIFGDRLEVGPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHRKGDYLATVMPDSG  544 (733)
T ss_pred             ceEEeCccccchhhhcchhhhhhcCCCccCCcccceeechhhhhhhccceEEEEecCCccceeeeecCCceEEEeccCCC
Confidence            3333221000              0           01000         1112355667778886543210        


Q ss_pred             --ce--eecc-------------------cCCCceeEEEeeCCCcEEEEEEecCccccccccccccCCCceeEEEeeCCC
Q 022111          165 --AL--VGLG-------------------LLDPVQKLASCGCDNTVKVWKMYNGIWKMDCFPALQMHSDWVRSVAWAPNL  221 (302)
Q Consensus       165 --~~--~~~~-------------------~~~~~~~l~s~~~D~~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~  221 (302)
                        ++  +.+.                   +.+..-+|+.++ -+.|+|||+...    .....+.....+|.+++.+|.|
T Consensus       545 ~~~VliHQLSK~~sQ~PF~kskG~vq~v~FHPs~p~lfVaT-q~~vRiYdL~kq----elvKkL~tg~kwiS~msihp~G  619 (733)
T KOG0650|consen  545 NKSVLIHQLSKRKSQSPFRKSKGLVQRVKFHPSKPYLFVAT-QRSVRIYDLSKQ----ELVKKLLTGSKWISSMSIHPNG  619 (733)
T ss_pred             cceEEEEecccccccCchhhcCCceeEEEecCCCceEEEEe-ccceEEEehhHH----HHHHHHhcCCeeeeeeeecCCC
Confidence              00  0000                   001122344444 356888887653    2233444456789999999985


Q ss_pred             CCCccEEEEEecCCeEEEEEeccCCcceeeeeeccCCCcEEEEEEccCCCEEEEecCC-ceEEee
Q 022111          222 GLPKSTIASASQDGTVVIWTCAKEGEQWEGRVLKDFKTPVWSVSWSLTGNLLAVADAN-NVTLWK  285 (302)
Q Consensus       222 ~~~~~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~la~~~~d-~i~~w~  285 (302)
                          ..|+.|+.|+.+.++|++-...++  ..+.-|...+.+|+|++.-.++++|+.| .+.++-
T Consensus       620 ----Dnli~gs~d~k~~WfDldlsskPy--k~lr~H~~avr~Va~H~ryPLfas~sdDgtv~Vfh  678 (733)
T KOG0650|consen  620 ----DNLILGSYDKKMCWFDLDLSSKPY--KTLRLHEKAVRSVAFHKRYPLFASGSDDGTVIVFH  678 (733)
T ss_pred             ----CeEEEecCCCeeEEEEcccCcchh--HHhhhhhhhhhhhhhccccceeeeecCCCcEEEEe
Confidence                679999999999999998654443  3446677889999999999999999998 677765

>KOG2055 consensus WD40 repeat protein [General function prediction only]

Probab=99.60  E-value=1.7e-13  Score=117.68  Aligned_cols=201  Identities=12%  Similarity=0.184  Sum_probs=144.5

Q ss_pred             ccCeEEEEeeCCCCCCEEEEEeCCCeEEEEEcCCCCceeEEEEecCCCCCeeEEEecCCCCCc-EEEEEecCCcEEEEEe
Q 022111           55 RGPVWQVAWAHPKFGSILASCSYDGQVIIWKEGNQNDWTQAHTFNDHKSSVNSIAWAPHELGL-SLACGSSDGNISVFTA  133 (302)
Q Consensus        55 ~~~v~~v~~~~~~~~~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~h~~~i~~l~~~pd~~~~-~l~sg~~d~~v~~~~~  133 (302)
                      .+.|++|.|.|.  ..+|.+|+.|++++||-+.... -..++.+..-..+|.++.|.|+  |. .+++++.....+.||+
T Consensus       213 ~~~I~sv~FHp~--~plllvaG~d~~lrifqvDGk~-N~~lqS~~l~~fPi~~a~f~p~--G~~~i~~s~rrky~ysyDl  287 (514)
T KOG2055|consen  213 HGGITSVQFHPT--APLLLVAGLDGTLRIFQVDGKV-NPKLQSIHLEKFPIQKAEFAPN--GHSVIFTSGRRKYLYSYDL  287 (514)
T ss_pred             cCCceEEEecCC--CceEEEecCCCcEEEEEecCcc-ChhheeeeeccCccceeeecCC--CceEEEecccceEEEEeec
Confidence            357999999653  5789999999999999885432 2345555556789999999997  55 8999999999999999


Q ss_pred             cCCCCeeeeeecccCCC-CeEEEEeCCCCCCCceeecccCCCceeEEEeeCCCcEEEEEEecCccccccccccccCCCce
Q 022111          134 TADGGWDTTRIDQAHPV-GVTSVSWAPAMAPGALVGLGLLDPVQKLASCGCDNTVKVWKMYNGIWKMDCFPALQMHSDWV  212 (302)
Q Consensus       134 ~~~~~~~~~~~~~~h~~-~v~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~D~~v~iwd~~~~~~~~~~~~~~~~h~~~v  212 (302)
                      .+..-..+..+. +++. .+.....+|+              +.+|+..|..|.|.|.-..++.+..    +++ -.+.|
T Consensus       288 e~ak~~k~~~~~-g~e~~~~e~FeVShd--------------~~fia~~G~~G~I~lLhakT~eli~----s~K-ieG~v  347 (514)
T KOG2055|consen  288 ETAKVTKLKPPY-GVEEKSMERFEVSHD--------------SNFIAIAGNNGHIHLLHAKTKELIT----SFK-IEGVV  347 (514)
T ss_pred             cccccccccCCC-CcccchhheeEecCC--------------CCeEEEcccCceEEeehhhhhhhhh----eee-eccEE
Confidence            754322222222 3332 2344444554              4789999999999999888764332    221 35668


Q ss_pred             eEEEeeCCCCCCccEEEEEecCCeEEEEEeccCCcceeeeeeccCCCcEEEEEEccCCCEEEEecCCc-eEEeee
Q 022111          213 RSVAWAPNLGLPKSTIASASQDGTVVIWTCAKEGEQWEGRVLKDFKTPVWSVSWSLTGNLLAVADANN-VTLWKE  286 (302)
Q Consensus       213 ~~v~~~p~~~~~~~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~la~~~~d~-i~~w~~  286 (302)
                      .+++|+.++    ..|.+++.+|.|.+||++.+.  ...+...+..-.-.+++.|++|.+||+|+..+ |.||+.
T Consensus       348 ~~~~fsSds----k~l~~~~~~GeV~v~nl~~~~--~~~rf~D~G~v~gts~~~S~ng~ylA~GS~~GiVNIYd~  416 (514)
T KOG2055|consen  348 SDFTFSSDS----KELLASGGTGEVYVWNLRQNS--CLHRFVDDGSVHGTSLCISLNGSYLATGSDSGIVNIYDG  416 (514)
T ss_pred             eeEEEecCC----cEEEEEcCCceEEEEecCCcc--eEEEEeecCccceeeeeecCCCceEEeccCcceEEEecc
Confidence            999999775    778888899999999998752  22233222223356788889999999998774 899995

>KOG1963 consensus WD40 repeat protein [General function prediction only]

Probab=99.58  E-value=1.1e-12  Score=120.70  Aligned_cols=243  Identities=19%  Similarity=0.316  Sum_probs=155.7

Q ss_pred             EEEEccCCCEEEEeeCCCcEEEEeecCCCceEEEEecCcccCeEEEEeeCCCCC-CEEEEEeCCCeEEEEEcCCCCceeE
Q 022111           16 DVAMDFYGKRLATASSDSSIKIIGLSNSASQHLATLKGHRGPVWQVAWAHPKFG-SILASCSYDGQVIIWKEGNQNDWTQ   94 (302)
Q Consensus        16 ~~~~s~~~~~l~s~~~d~~v~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~-~~l~s~s~D~~i~iwd~~~~~~~~~   94 (302)
                      ...|++|+++++.+ .+.+|.||...+  +.++..+.+|.+++..+.+.+.... .++.+++.||+|++||...+.   .
T Consensus        21 ~avfSnD~k~l~~~-~~~~V~VyS~~T--g~~i~~l~~~~a~l~s~~~~~~~~~~~~~~~~sl~G~I~vwd~~~~~---L   94 (792)
T KOG1963|consen   21 PAVFSNDAKFLFLC-TGNFVKVYSTAT--GECITSLEDHTAPLTSVIVLPSSENANYLIVCSLDGTIRVWDWSDGE---L   94 (792)
T ss_pred             ccccccCCcEEEEe-eCCEEEEEecch--HhhhhhcccccCccceeeecCCCccceEEEEEecCccEEEecCCCcE---E
Confidence            35689999988865 467899998755  5677789999999999998764322 578899999999999986542   3


Q ss_pred             EEEecCCCCCeeEEEecCCC------------CCcEEEE-----------------------------------------
Q 022111           95 AHTFNDHKSSVNSIAWAPHE------------LGLSLAC-----------------------------------------  121 (302)
Q Consensus        95 ~~~~~~h~~~i~~l~~~pd~------------~~~~l~s-----------------------------------------  121 (302)
                      ++++.. ..++-.+.+.|..            ....+.+                                         
T Consensus        95 lkt~~~-~~~v~~~~~~~~~a~~s~~~~~s~~~~~~~~~~s~~~~~q~~~~~~~t~~~~~~d~~~~~~~~~~I~~~~~ge  173 (792)
T KOG1963|consen   95 LKTFDN-NLPVHALVYKPAQADISANVYVSVEDYSILTTFSKKLSKQSSRFVLATFDSAKGDFLKEHQEPKSIVDNNSGE  173 (792)
T ss_pred             EEEEec-CCceeEEEechhHhCccceeEeecccceeeeecccccccceeeeEeeeccccchhhhhhhcCCccEEEcCCce
Confidence            333221 1112222111100            0001111                                         


Q ss_pred             ---EecCCcEEEEEecCCCCeee--eeecccCCCCeEEEEeCCCCCCCceeecccCCCceeEEEeeCCCcEEEEEEecCc
Q 022111          122 ---GSSDGNISVFTATADGGWDT--TRIDQAHPVGVTSVSWAPAMAPGALVGLGLLDPVQKLASCGCDNTVKVWKMYNGI  196 (302)
Q Consensus       122 ---g~~d~~v~~~~~~~~~~~~~--~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~D~~v~iwd~~~~~  196 (302)
                         .-.+..+.+|...+.. +..  ......|...+++.+++|.              +.++|++-.||.|.+|.-....
T Consensus       174 ~~~i~~~~~~~~~~v~~~~-~~~~~~~~~~~Htf~~t~~~~spn--------------~~~~Aa~d~dGrI~vw~d~~~~  238 (792)
T KOG1963|consen  174 FKGIVHMCKIHIYFVPKHT-KHTSSRDITVHHTFNITCVALSPN--------------ERYLAAGDSDGRILVWRDFGSS  238 (792)
T ss_pred             EEEEEEeeeEEEEEecccc-eeeccchhhhhhcccceeEEeccc--------------cceEEEeccCCcEEEEeccccc
Confidence               1111122222222111 000  0111134444555555554              5899999999999999754311


Q ss_pred             cccccccccccCCCceeEEEeeCCCCCCccEEEEEecCCeEEEEEeccCCcceeeeeeccCCCcEEEEEEccCCCEEEEe
Q 022111          197 WKMDCFPALQMHSDWVRSVAWAPNLGLPKSTIASASQDGTVVIWTCAKEGEQWEGRVLKDFKTPVWSVSWSLTGNLLAVA  276 (302)
Q Consensus       197 ~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~la~~  276 (302)
                      ..-.-...+.=|.+.|++++|+++|    .+|.||+..+-+-+|.+.+.+.    .++....++|..+.+|||++..++.
T Consensus       239 ~~~~t~t~lHWH~~~V~~L~fS~~G----~~LlSGG~E~VLv~Wq~~T~~k----qfLPRLgs~I~~i~vS~ds~~~sl~  310 (792)
T KOG1963|consen  239 DDSETCTLLHWHHDEVNSLSFSSDG----AYLLSGGREGVLVLWQLETGKK----QFLPRLGSPILHIVVSPDSDLYSLV  310 (792)
T ss_pred             cccccceEEEecccccceeEEecCC----ceEeecccceEEEEEeecCCCc----ccccccCCeeEEEEEcCCCCeEEEE
Confidence            1111123445588899999999996    7799999999999999987653    4556678899999999999988887


Q ss_pred             cCC-ceEEeeecC
Q 022111          277 DAN-NVTLWKEAV  288 (302)
Q Consensus       277 ~~d-~i~~w~~~~  288 (302)
                      ..| .|++-.+..
T Consensus       311 ~~DNqI~li~~~d  323 (792)
T KOG1963|consen  311 LEDNQIHLIKASD  323 (792)
T ss_pred             ecCceEEEEeccc
Confidence            777 688887744

>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=99.58  E-value=3.1e-12  Score=105.38  Aligned_cols=237  Identities=16%  Similarity=0.194  Sum_probs=145.6

Q ss_pred             ceeEEEEccCCCEEEEeeCCCcEEEEeecCCCceEEEEecCcccCe--EEEEeeCCCCCCEEEEEeC-------CCeEEE
Q 022111           13 TVHDVAMDFYGKRLATASSDSSIKIIGLSNSASQHLATLKGHRGPV--WQVAWAHPKFGSILASCSY-------DGQVII   83 (302)
Q Consensus        13 ~v~~~~~s~~~~~l~s~~~d~~v~lw~~~~~~~~~~~~~~~h~~~v--~~v~~~~~~~~~~l~s~s~-------D~~i~i   83 (302)
                      ...+++|+.|...++.|- |.-.|||+.+.  .+......-+...+  .-+=|-    .++||-.+.       -..+.|
T Consensus         7 ~~lsvs~NQD~ScFava~-~~Gfriyn~~P--~ke~~~r~~~~~G~~~veMLfR----~N~laLVGGg~~pky~pNkviI   79 (346)
T KOG2111|consen    7 KTLSVSFNQDHSCFAVAT-DTGFRIYNCDP--FKESASRQFIDGGFKIVEMLFR----SNYLALVGGGSRPKYPPNKVII   79 (346)
T ss_pred             ceeEEEEccCCceEEEEe-cCceEEEecCc--hhhhhhhccccCchhhhhHhhh----hceEEEecCCCCCCCCCceEEE
Confidence            345589999988888765 55589998742  11111111111111  112221    356554443       247999


Q ss_pred             EEcCCCCceeEEEEecCCCCCeeEEEecCCCCCcEEEEEecCCcEEEEEecCCCCeeeeeec-ccCCCCeEEEEeCCCCC
Q 022111           84 WKEGNQNDWTQAHTFNDHKSSVNSIAWAPHELGLSLACGSSDGNISVFTATADGGWDTTRID-QAHPVGVTSVSWAPAMA  162 (302)
Q Consensus        84 wd~~~~~~~~~~~~~~~h~~~i~~l~~~pd~~~~~l~sg~~d~~v~~~~~~~~~~~~~~~~~-~~h~~~v~~~~~~~~~~  162 (302)
                      ||-...   .++.++. -+.+|.++.+.++    +|+.. ..+.|.+|.....-. .+..++ ...+.+..+  ..|.. 
T Consensus        80 WDD~k~---~~i~el~-f~~~I~~V~l~r~----riVvv-l~~~I~VytF~~n~k-~l~~~et~~NPkGlC~--~~~~~-  146 (346)
T KOG2111|consen   80 WDDLKE---RCIIELS-FNSEIKAVKLRRD----RIVVV-LENKIYVYTFPDNPK-LLHVIETRSNPKGLCS--LCPTS-  146 (346)
T ss_pred             EecccC---cEEEEEE-eccceeeEEEcCC----eEEEE-ecCeEEEEEcCCChh-heeeeecccCCCceEe--ecCCC-
Confidence            994332   3555554 5788999999876    34433 578999998753211 112221 111222222  22321 


Q ss_pred             CCceeecccCCCceeEEE-eeCCCcEEEEEEecCccccccccccccCCCceeEEEeeCCCCCCccEEEEEecCCe-EEEE
Q 022111          163 PGALVGLGLLDPVQKLAS-CGCDNTVKVWKMYNGIWKMDCFPALQMHSDWVRSVAWAPNLGLPKSTIASASQDGT-VVIW  240 (302)
Q Consensus       163 ~~~~~~~~~~~~~~~l~s-~~~D~~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~l~s~s~D~~-i~iw  240 (302)
                                 +...||- |-.-|.|+|-|+......  ......+|.+.|.|++.+-+|    ..+||+|..|+ ||||
T Consensus       147 -----------~k~~LafPg~k~GqvQi~dL~~~~~~--~p~~I~AH~s~Iacv~Ln~~G----t~vATaStkGTLIRIF  209 (346)
T KOG2111|consen  147 -----------NKSLLAFPGFKTGQVQIVDLASTKPN--APSIINAHDSDIACVALNLQG----TLVATASTKGTLIRIF  209 (346)
T ss_pred             -----------CceEEEcCCCccceEEEEEhhhcCcC--CceEEEcccCceeEEEEcCCc----cEEEEeccCcEEEEEE
Confidence                       1123333 334688999998754221  113457899999999999885    88999999997 9999


Q ss_pred             EeccCCcceeeeeecc-CCCcEEEEEEccCCCEEEEecCC-ceEEeeecC
Q 022111          241 TCAKEGEQWEGRVLKD-FKTPVWSVSWSLTGNLLAVADAN-NVTLWKEAV  288 (302)
Q Consensus       241 d~~~~~~~~~~~~~~~-~~~~v~~~~~spdg~~la~~~~d-~i~~w~~~~  288 (302)
                      |..+....  .++..+ ....|++++|||+..+||+++++ +++++...+
T Consensus       210 dt~~g~~l--~E~RRG~d~A~iy~iaFSp~~s~LavsSdKgTlHiF~l~~  257 (346)
T KOG2111|consen  210 DTEDGTLL--QELRRGVDRADIYCIAFSPNSSWLAVSSDKGTLHIFSLRD  257 (346)
T ss_pred             EcCCCcEe--eeeecCCchheEEEEEeCCCccEEEEEcCCCeEEEEEeec
Confidence            98765322  222222 23579999999999999999888 799998754

>KOG2139 consensus WD40 repeat protein [General function prediction only]

Probab=99.53  E-value=3.2e-12  Score=107.01  Aligned_cols=233  Identities=20%  Similarity=0.307  Sum_probs=149.8

Q ss_pred             cceeEEEEccCCCEEEEeeCCCcEEEEeecCCCceEEEEecC-cccCeEEEEeeCCCCCCEEEEEeCCCeEEEEEcCCCC
Q 022111           12 DTVHDVAMDFYGKRLATASSDSSIKIIGLSNSASQHLATLKG-HRGPVWQVAWAHPKFGSILASCSYDGQVIIWKEGNQN   90 (302)
Q Consensus        12 ~~v~~~~~s~~~~~l~s~~~d~~v~lw~~~~~~~~~~~~~~~-h~~~v~~v~~~~~~~~~~l~s~s~D~~i~iwd~~~~~   90 (302)
                      -.+..++|++.-..+|++..|.+||+|+-+..   ....++. -...|++++|-|. .++-|+.|+.. -|.||......
T Consensus        99 ~dlr~~aWhqH~~~fava~nddvVriy~ksst---~pt~Lks~sQrnvtclawRPl-saselavgCr~-gIciW~~s~tl  173 (445)
T KOG2139|consen   99 IDLRGVAWHQHIIAFAVATNDDVVRIYDKSST---CPTKLKSVSQRNVTCLAWRPL-SASELAVGCRA-GICIWSDSRTL  173 (445)
T ss_pred             cceeeEeechhhhhhhhhccCcEEEEeccCCC---CCceecchhhcceeEEEeccC-Ccceeeeeecc-eeEEEEcCccc
Confidence            34667889887677889999999999986542   2223332 3457999999764 46677777664 58899753211


Q ss_pred             c---------ee--EEEEecCCCCCeeEEEecCCCCCcEEEEEec-CCcEEEEEecCCCCeeeeeecccCCCCeEEEEeC
Q 022111           91 D---------WT--QAHTFNDHKSSVNSIAWAPHELGLSLACGSS-DGNISVFTATADGGWDTTRIDQAHPVGVTSVSWA  158 (302)
Q Consensus        91 ~---------~~--~~~~~~~h~~~i~~l~~~pd~~~~~l~sg~~-d~~v~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~  158 (302)
                      .         ..  .+....+| .+|+++.|++|  |..+++++. |..|.|||..++....+..   .....++-+.|+
T Consensus       174 n~~r~~~~~s~~~~qvl~~pgh-~pVtsmqwn~d--gt~l~tAS~gsssi~iWdpdtg~~~pL~~---~glgg~slLkwS  247 (445)
T KOG2139|consen  174 NANRNIRMMSTHHLQVLQDPGH-NPVTSMQWNED--GTILVTASFGSSSIMIWDPDTGQKIPLIP---KGLGGFSLLKWS  247 (445)
T ss_pred             ccccccccccccchhheeCCCC-ceeeEEEEcCC--CCEEeecccCcceEEEEcCCCCCcccccc---cCCCceeeEEEc
Confidence            0         01  12233445 68999999998  678888775 5799999998765543332   234568889999


Q ss_pred             CCCCCCceeecccCCCceeEEEeeCCCcEEEEEEecCccccccccccccCCCceeEEEeeCCCCCCccEEEEEecCCeEE
Q 022111          159 PAMAPGALVGLGLLDPVQKLASCGCDNTVKVWKMYNGIWKMDCFPALQMHSDWVRSVAWAPNLGLPKSTIASASQDGTVV  238 (302)
Q Consensus       159 ~~~~~~~~~~~~~~~~~~~l~s~~~D~~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~l~s~s~D~~i~  238 (302)
                      |++              ..|+.+..|+..++|..... |.-..   ..-..+.|...+|+|.|.   ..|.+.+..-  +
T Consensus       248 Pdg--------------d~lfaAt~davfrlw~e~q~-wt~er---w~lgsgrvqtacWspcGs---fLLf~~sgsp--~  304 (445)
T KOG2139|consen  248 PDG--------------DVLFAATCDAVFRLWQENQS-WTKER---WILGSGRVQTACWSPCGS---FLLFACSGSP--R  304 (445)
T ss_pred             CCC--------------CEEEEecccceeeeehhccc-ceecc---eeccCCceeeeeecCCCC---EEEEEEcCCc--e
Confidence            974              78889999999999976532 21111   112234789999999972   3444444433  4


Q ss_pred             EEEeccCCcc---------eeeeeecc------------CCCcEEEEEEccCCCEEEEecC
Q 022111          239 IWTCAKEGEQ---------WEGRVLKD------------FKTPVWSVSWSLTGNLLAVADA  278 (302)
Q Consensus       239 iwd~~~~~~~---------~~~~~~~~------------~~~~v~~~~~spdg~~la~~~~  278 (302)
                      ++.+....+.         +...+..+            -.+++-+++|.|.|++||+.-.
T Consensus       305 lysl~f~~~~~~~~~~~~~k~~lliaDL~e~ti~ag~~l~cgeaq~lawDpsGeyLav~fK  365 (445)
T KOG2139|consen  305 LYSLTFDGEDSVFLRPQSIKRVLLIADLQEVTICAGQRLCCGEAQCLAWDPSGEYLAVIFK  365 (445)
T ss_pred             EEEEeecCCCccccCcccceeeeeeccchhhhhhcCcccccCccceeeECCCCCEEEEEEc
Confidence            4544321110         01111111            1256788999999999999843

>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]

Probab=99.52  E-value=6.7e-13  Score=116.11  Aligned_cols=163  Identities=21%  Similarity=0.272  Sum_probs=106.6

Q ss_pred             cceeEEEEccCC-CEEEEeeCCCcEEEEeecCCCceEEEEecCcccCeEEEEeeCCCCCCEEEEEeCCCeEEEEEcC-CC
Q 022111           12 DTVHDVAMDFYG-KRLATASSDSSIKIIGLSNSASQHLATLKGHRGPVWQVAWAHPKFGSILASCSYDGQVIIWKEG-NQ   89 (302)
Q Consensus        12 ~~v~~~~~s~~~-~~l~s~~~d~~v~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~s~D~~i~iwd~~-~~   89 (302)
                      ..|+++.|-|.+ ..++.+-.+|.+++||...            ....+..+|...+++..++..       .|.-. ..
T Consensus       220 tsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~------------~~~~t~p~~~~~k~~~~f~i~-------t~ksk~~r  280 (636)
T KOG2394|consen  220 SSVTCIKWVPGSDSLFLVAHASGNLYLYDKEI------------VCGATAPSYQALKDGDQFAIL-------TSKSKKTR  280 (636)
T ss_pred             cceEEEEEEeCCCceEEEEEecCceEEeeccc------------cccCCCCcccccCCCCeeEEe-------eeeccccC
Confidence            578888887644 3555566788888887521            111112222222234444321       22111 11


Q ss_pred             CceeEEEEecCCCCCeeEEEecCCCCCcEEEEEecCCcEEEEEecCCCCeeeeeecccCCCCeEEEEeCCCCCCCceeec
Q 022111           90 NDWTQAHTFNDHKSSVNSIAWAPHELGLSLACGSSDGNISVFTATADGGWDTTRIDQAHPVGVTSVSWAPAMAPGALVGL  169 (302)
Q Consensus        90 ~~~~~~~~~~~h~~~i~~l~~~pd~~~~~l~sg~~d~~v~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~  169 (302)
                      +   ++..+.--++.|+..+|+||  |.+||+.+.|+.+|||+..+..   +.-+-...-....|++|+|++        
T Consensus       281 N---Pv~~w~~~~g~in~f~FS~D--G~~LA~VSqDGfLRvF~fdt~e---Llg~mkSYFGGLLCvcWSPDG--------  344 (636)
T KOG2394|consen  281 N---PVARWHIGEGSINEFAFSPD--GKYLATVSQDGFLRIFDFDTQE---LLGVMKSYFGGLLCVCWSPDG--------  344 (636)
T ss_pred             C---ccceeEeccccccceeEcCC--CceEEEEecCceEEEeeccHHH---HHHHHHhhccceEEEEEcCCc--------
Confidence            1   23333334568999999997  8899999999999999876421   111111334568999999974        


Q ss_pred             ccCCCceeEEEeeCCCcEEEEEEecCccccccccccccCCCceeEEEeeC
Q 022111          170 GLLDPVQKLASCGCDNTVKVWKMYNGIWKMDCFPALQMHSDWVRSVAWAP  219 (302)
Q Consensus       170 ~~~~~~~~l~s~~~D~~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~~~p  219 (302)
                            ++|++||+|..|.||.+..+    +.+..-.||++||..|+|.|
T Consensus       345 ------KyIvtGGEDDLVtVwSf~er----RVVARGqGHkSWVs~VaFDp  384 (636)
T KOG2394|consen  345 ------KYIVTGGEDDLVTVWSFEER----RVVARGQGHKSWVSVVAFDP  384 (636)
T ss_pred             ------cEEEecCCcceEEEEEeccc----eEEEeccccccceeeEeecc
Confidence                  99999999999999999876    34445578999999999987

>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]

Probab=99.50  E-value=1.9e-11  Score=116.23  Aligned_cols=260  Identities=17%  Similarity=0.112  Sum_probs=156.6

Q ss_pred             ccccccceeEEEEccC-CCEEEEeeCCCcEEEEeecCC-----CceEEEEecCcccCeEEEEeeCCCCCCEEEEEeCCCe
Q 022111            7 ETGHEDTVHDVAMDFY-GKRLATASSDSSIKIIGLSNS-----ASQHLATLKGHRGPVWQVAWAHPKFGSILASCSYDGQ   80 (302)
Q Consensus         7 ~~~h~~~v~~~~~s~~-~~~l~s~~~d~~v~lw~~~~~-----~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~s~D~~   80 (302)
                      +..|+..|..++.++. +.+++|||.||+|++|+...-     ......+..--...+.++.+..  .++.+|.++.||.
T Consensus      1044 L~Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~~~--~~~~~Av~t~DG~ 1121 (1431)
T KOG1240|consen 1044 LHEHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVTMCG--NGDQFAVSTKDGS 1121 (1431)
T ss_pred             hhhccccccceeecCCCCceEEEecCCceEEEeeehhhhcCcceeeeeEEEeccCCceEEEEecc--CCCeEEEEcCCCe
Confidence            3457888888887654 589999999999999997421     1122223332355677777754  3789999999999


Q ss_pred             EEEEEcCCCCc--e--eEEEEecCCC-CCe-eEEEecCCCCCcEEEEEecCCcEEEEEecCCCCeeeeeecccCCCCeEE
Q 022111           81 VIIWKEGNQND--W--TQAHTFNDHK-SSV-NSIAWAPHELGLSLACGSSDGNISVFTATADGGWDTTRIDQAHPVGVTS  154 (302)
Q Consensus        81 i~iwd~~~~~~--~--~~~~~~~~h~-~~i-~~l~~~pd~~~~~l~sg~~d~~v~~~~~~~~~~~~~~~~~~~h~~~v~~  154 (302)
                      |++.++...+.  .  .+....+.++ +.+ ...+|......-.|+.+..-+.|..||.+........... ...+.|++
T Consensus      1122 v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~~w~lk~~-~~hG~vTS 1200 (1431)
T KOG1240|consen 1122 VRVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHDAWRLKNQ-LRHGLVTS 1200 (1431)
T ss_pred             EEEEEccccccccceeeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecchhhhhHHhhhcC-ccccceeE
Confidence            99999854211  1  1111122222 233 3334433321226777888889999998754221111111 22345888


Q ss_pred             EEeCCCCCCCceeecccCCCceeEEEeeCCCcEEEEEEecCcccccccccc-ccCCCceeEEEeeCCCCCCccEEEEE-e
Q 022111          155 VSWAPAMAPGALVGLGLLDPVQKLASCGCDNTVKVWKMYNGIWKMDCFPAL-QMHSDWVRSVAWAPNLGLPKSTIASA-S  232 (302)
Q Consensus       155 ~~~~~~~~~~~~~~~~~~~~~~~l~s~~~D~~v~iwd~~~~~~~~~~~~~~-~~h~~~v~~v~~~p~~~~~~~~l~s~-s  232 (302)
                      ++-+|..              ..++.|+..|.+-+||++-+.    .+... .++..+|+.+..+|-... ....+++ +
T Consensus      1201 i~idp~~--------------~WlviGts~G~l~lWDLRF~~----~i~sw~~P~~~~i~~v~~~~~~~~-~S~~vs~~~ 1261 (1431)
T KOG1240|consen 1201 IVIDPWC--------------NWLVIGTSRGQLVLWDLRFRV----PILSWEHPARAPIRHVWLCPTYPQ-ESVSVSAGS 1261 (1431)
T ss_pred             EEecCCc--------------eEEEEecCCceEEEEEeecCc----eeecccCcccCCcceEEeeccCCC-CceEEEecc
Confidence            8887753              689999999999999998542    11111 245678999888886421 1344444 4


Q ss_pred             -cCCeEEEEEeccCCcceeeeee-----------c-----cCCCcEEEEEEccCCCEEEEecCC-ceEEeeecC
Q 022111          233 -QDGTVVIWTCAKEGEQWEGRVL-----------K-----DFKTPVWSVSWSLTGNLLAVADAN-NVTLWKEAV  288 (302)
Q Consensus       233 -~D~~i~iwd~~~~~~~~~~~~~-----------~-----~~~~~v~~~~~spdg~~la~~~~d-~i~~w~~~~  288 (302)
                       ..+.|.+|++............           .     ..........+..-+.++.+|+.| +|+.||.+.
T Consensus      1262 ~~~nevs~wn~~~g~~~~vl~~s~~~p~ls~~~Ps~~~~kp~~~~~~~~~~~~~~~~~ltggsd~kIR~wD~~~ 1335 (1431)
T KOG1240|consen 1262 SSNNEVSTWNMETGLRQTVLWASDGAPILSYALPSNDARKPDSLAGISCGVCEKNGFLLTGGSDMKIRKWDPTR 1335 (1431)
T ss_pred             cCCCceeeeecccCcceEEEEcCCCCcchhhhcccccCCCCCcccceeeecccCCceeeecCCccceeeccCCC
Confidence             5778999998764321110000           0     001112233443345677777777 899999754

>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]

Probab=99.50  E-value=6.1e-14  Score=128.10  Aligned_cols=209  Identities=19%  Similarity=0.267  Sum_probs=138.1

Q ss_pred             EEEecCcccCeEEEEeeCCCCCCEEEEEeCCCeEEEEEcCCCCceeEEEEecCCCCCeeEEEecCCCCCcEEEEEecCCc
Q 022111           48 LATLKGHRGPVWQVAWAHPKFGSILASCSYDGQVIIWKEGNQNDWTQAHTFNDHKSSVNSIAWAPHELGLSLACGSSDGN  127 (302)
Q Consensus        48 ~~~~~~h~~~v~~v~~~~~~~~~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~h~~~i~~l~~~pd~~~~~l~sg~~d~~  127 (302)
                      +..+.+|-..|+|+.|..  .|.++++|+.|..++||.+++.   .++....+|.+.|+.++.+.+  ..++|+++.|..
T Consensus       183 ikrLlgH~naVyca~fDr--tg~~Iitgsdd~lvKiwS~et~---~~lAs~rGhs~ditdlavs~~--n~~iaaaS~D~v  255 (1113)
T KOG0644|consen  183 IKRLLGHRNAVYCAIFDR--TGRYIITGSDDRLVKIWSMETA---RCLASCRGHSGDITDLAVSSN--NTMIAAASNDKV  255 (1113)
T ss_pred             HHHHHhhhhheeeeeecc--ccceEeecCccceeeeeeccch---hhhccCCCCccccchhccchh--hhhhhhcccCce
Confidence            445679999999999953  4899999999999999997665   467788999999999999865  568999999999


Q ss_pred             EEEEEecCCCCeeeeeecccCCCCeEEEEeCCCCCCCceeecccCCCceeEEEeeCCCcEEEEEEe-cCccccccccccc
Q 022111          128 ISVFTATADGGWDTTRIDQAHPVGVTSVSWAPAMAPGALVGLGLLDPVQKLASCGCDNTVKVWKMY-NGIWKMDCFPALQ  206 (302)
Q Consensus       128 v~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~D~~v~iwd~~-~~~~~~~~~~~~~  206 (302)
                      |++|.+......  . +..+|+..|++++|+|.                  ++.+.||++++||.+ ....-......+.
T Consensus       256 IrvWrl~~~~pv--s-vLrghtgavtaiafsP~------------------~sss~dgt~~~wd~r~~~~~y~prp~~~~  314 (1113)
T KOG0644|consen  256 IRVWRLPDGAPV--S-VLRGHTGAVTAIAFSPR------------------ASSSDDGTCRIWDARLEPRIYVPRPLKFT  314 (1113)
T ss_pred             EEEEecCCCchH--H-HHhccccceeeeccCcc------------------ccCCCCCceEeccccccccccCCCCCCcc
Confidence            999988754332  2 33489999999999984                  367789999999976 1100000000000


Q ss_pred             cCCCceeEEEeeCCCC---------------------------------CCccEEEEEecCCeEEEEEeccCCcceeeee
Q 022111          207 MHSDWVRSVAWAPNLG---------------------------------LPKSTIASASQDGTVVIWTCAKEGEQWEGRV  253 (302)
Q Consensus       207 ~h~~~v~~v~~~p~~~---------------------------------~~~~~l~s~s~D~~i~iwd~~~~~~~~~~~~  253 (302)
                       .++-+-++-|..++.                                 -.....++.-.+..+++|++....   ..-.
T Consensus       315 -~~~~~~s~~~~~~~~~f~Tgs~d~ea~n~e~~~l~~~~~~lif~t~ssd~~~~~~~ar~~~~~~vwnl~~g~---l~H~  390 (1113)
T KOG0644|consen  315 -EKDLVDSILFENNGDRFLTGSRDGEARNHEFEQLAWRSNLLIFVTRSSDLSSIVVTARNDHRLCVWNLYTGQ---LLHN  390 (1113)
T ss_pred             -cccceeeeeccccccccccccCCcccccchhhHhhhhccceEEEeccccccccceeeeeeeEeeeeecccch---hhhh
Confidence             001111222211110                                 001223333344456666654321   1123


Q ss_pred             eccCCCcEEEEEEccCC-CEEEEecCC-ceEEeeecC
Q 022111          254 LKDFKTPVWSVSWSLTG-NLLAVADAN-NVTLWKEAV  288 (302)
Q Consensus       254 ~~~~~~~v~~~~~spdg-~~la~~~~d-~i~~w~~~~  288 (302)
                      +.+|...++.+.++|=+ ++..+++.| +..|||+.+
T Consensus       391 l~ghsd~~yvLd~Hpfn~ri~msag~dgst~iwdi~e  427 (1113)
T KOG0644|consen  391 LMGHSDEVYVLDVHPFNPRIAMSAGYDGSTIIWDIWE  427 (1113)
T ss_pred             hcccccceeeeeecCCCcHhhhhccCCCceEeeeccc
Confidence            35677889999999955 444677778 799999754

>KOG4227 consensus WD40 repeat protein [General function prediction only]

Probab=99.48  E-value=9.8e-13  Score=111.13  Aligned_cols=208  Identities=13%  Similarity=0.129  Sum_probs=138.8

Q ss_pred             EEecCcccCeEEEEeeCCCCCCEEEEEeCCCeEEEEEcCCCC---ceeEEEEec-CCCCCeeEEEecCCCCCcEEEEEec
Q 022111           49 ATLKGHRGPVWQVAWAHPKFGSILASCSYDGQVIIWKEGNQN---DWTQAHTFN-DHKSSVNSIAWAPHELGLSLACGSS  124 (302)
Q Consensus        49 ~~~~~h~~~v~~v~~~~~~~~~~l~s~s~D~~i~iwd~~~~~---~~~~~~~~~-~h~~~i~~l~~~pd~~~~~l~sg~~  124 (302)
                      +.+.+|.+-|.+|.|+++  +..||+|+.|..+++|.+...-   ..+++.... .|...|.|++|...  ...|.+|..
T Consensus        50 KD~~~H~GCiNAlqFS~N--~~~L~SGGDD~~~~~W~~de~~~~k~~KPI~~~~~~H~SNIF~L~F~~~--N~~~~SG~~  125 (609)
T KOG4227|consen   50 KDVREHTGCINALQFSHN--DRFLASGGDDMHGRVWNVDELMVRKTPKPIGVMEHPHRSNIFSLEFDLE--NRFLYSGER  125 (609)
T ss_pred             hhhhhhccccceeeeccC--CeEEeecCCcceeeeechHHHHhhcCCCCceeccCccccceEEEEEccC--CeeEecCCC
Confidence            356789999999999875  8999999999999999874321   112333322 35589999999764  458999999


Q ss_pred             CCcEEEEEecCCCCeeeeeecccCCCCeEEEEeCCCCCCCceeecccCCCceeEEEeeCCCcEEEEEEecCccccccccc
Q 022111          125 DGNISVFTATADGGWDTTRIDQAHPVGVTSVSWAPAMAPGALVGLGLLDPVQKLASCGCDNTVKVWKMYNGIWKMDCFPA  204 (302)
Q Consensus       125 d~~v~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~D~~v~iwd~~~~~~~~~~~~~  204 (302)
                      +++|.+-|+.+...+....-. .....|..+.-+|.              ...|++.+.++.|.+||.+........ ..
T Consensus       126 ~~~VI~HDiEt~qsi~V~~~~-~~~~~VY~m~~~P~--------------DN~~~~~t~~~~V~~~D~Rd~~~~~~~-~~  189 (609)
T KOG4227|consen  126 WGTVIKHDIETKQSIYVANEN-NNRGDVYHMDQHPT--------------DNTLIVVTRAKLVSFIDNRDRQNPISL-VL  189 (609)
T ss_pred             cceeEeeecccceeeeeeccc-CcccceeecccCCC--------------CceEEEEecCceEEEEeccCCCCCCce-ee
Confidence            999999998754333222100 11235666666654              267899999999999999875432221 11


Q ss_pred             cccCCCceeEEEeeCCCCCCccEEEEEecCCeEEEEEeccCCccee-eeeeccCC---CcEEEEEEccCCCEEEEecCC
Q 022111          205 LQMHSDWVRSVAWAPNLGLPKSTIASASQDGTVVIWTCAKEGEQWE-GRVLKDFK---TPVWSVSWSLTGNLLAVADAN  279 (302)
Q Consensus       205 ~~~h~~~v~~v~~~p~~~~~~~~l~s~s~D~~i~iwd~~~~~~~~~-~~~~~~~~---~~v~~~~~spdg~~la~~~~d  279 (302)
                      +......-..+-|+|..   +..|++.+.-+.+-+||.+....... .....+..   ..-.++.|+|+|+++.+--+.
T Consensus       190 ~AN~~~~F~t~~F~P~~---P~Li~~~~~~~G~~~~D~R~~~~~~~~~~~~~~L~~~~~~~M~~~~~~~G~Q~msiRR~  265 (609)
T KOG4227|consen  190 PANSGKNFYTAEFHPET---PALILVNSETGGPNVFDRRMQARPVYQRSMFKGLPQENTEWMGSLWSPSGNQFMSIRRG  265 (609)
T ss_pred             ecCCCccceeeeecCCC---ceeEEeccccCCCCceeeccccchHHhhhccccCcccchhhhheeeCCCCCeehhhhcc
Confidence            22233445678899975   68899999999999999986532210 00001111   123577888888877665433

>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=99.47  E-value=1.4e-10  Score=95.78  Aligned_cols=180  Identities=14%  Similarity=0.215  Sum_probs=121.6

Q ss_pred             CcEEEEeecCCCceEEEEecCcccCeEEEEeeCCCCCCEEEEEeCCCeEEEEEcCCCCceeEEEEecCCCCCeeEEEecC
Q 022111           33 SSIKIIGLSNSASQHLATLKGHRGPVWQVAWAHPKFGSILASCSYDGQVIIWKEGNQNDWTQAHTFNDHKSSVNSIAWAP  112 (302)
Q Consensus        33 ~~v~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~h~~~i~~l~~~p  112 (302)
                      .+|.|||=..  ..++..+. -..+|.+|++.+    +.|+..- +..|.+|...+.-  +.++.+.....|-.-++.+|
T Consensus        75 NkviIWDD~k--~~~i~el~-f~~~I~~V~l~r----~riVvvl-~~~I~VytF~~n~--k~l~~~et~~NPkGlC~~~~  144 (346)
T KOG2111|consen   75 NKVIIWDDLK--ERCIIELS-FNSEIKAVKLRR----DRIVVVL-ENKIYVYTFPDNP--KLLHVIETRSNPKGLCSLCP  144 (346)
T ss_pred             ceEEEEeccc--CcEEEEEE-eccceeeEEEcC----CeEEEEe-cCeEEEEEcCCCh--hheeeeecccCCCceEeecC
Confidence            5689998332  33455553 356899999974    3555544 5689999886431  23344433333333566677


Q ss_pred             CCCCcEEEE-EecCCcEEEEEecCCCCeeeeeecccCCCCeEEEEeCCCCCCCceeecccCCCceeEEEeeCCCc-EEEE
Q 022111          113 HELGLSLAC-GSSDGNISVFTATADGGWDTTRIDQAHPVGVTSVSWAPAMAPGALVGLGLLDPVQKLASCGCDNT-VKVW  190 (302)
Q Consensus       113 d~~~~~l~s-g~~d~~v~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~D~~-v~iw  190 (302)
                      ......||. |-.-|+|+|-|+.....-.+..+ .+|...|.+++.+-+              |.++||+|..|+ ||||
T Consensus       145 ~~~k~~LafPg~k~GqvQi~dL~~~~~~~p~~I-~AH~s~Iacv~Ln~~--------------Gt~vATaStkGTLIRIF  209 (346)
T KOG2111|consen  145 TSNKSLLAFPGFKTGQVQIVDLASTKPNAPSII-NAHDSDIACVALNLQ--------------GTLVATASTKGTLIRIF  209 (346)
T ss_pred             CCCceEEEcCCCccceEEEEEhhhcCcCCceEE-EcccCceeEEEEcCC--------------ccEEEEeccCcEEEEEE
Confidence            654444443 33458999998875432122334 389999999987654              589999999998 8899


Q ss_pred             EEecCccccccccccc-c-CCCceeEEEeeCCCCCCccEEEEEecCCeEEEEEeccC
Q 022111          191 KMYNGIWKMDCFPALQ-M-HSDWVRSVAWAPNLGLPKSTIASASQDGTVVIWTCAKE  245 (302)
Q Consensus       191 d~~~~~~~~~~~~~~~-~-h~~~v~~v~~~p~~~~~~~~l~s~s~D~~i~iwd~~~~  245 (302)
                      |..++.    .+.++. | ....|.|++|||+.    .+||.+|+-|++.||.++..
T Consensus       210 dt~~g~----~l~E~RRG~d~A~iy~iaFSp~~----s~LavsSdKgTlHiF~l~~~  258 (346)
T KOG2111|consen  210 DTEDGT----LLQELRRGVDRADIYCIAFSPNS----SWLAVSSDKGTLHIFSLRDT  258 (346)
T ss_pred             EcCCCc----EeeeeecCCchheEEEEEeCCCc----cEEEEEcCCCeEEEEEeecC
Confidence            998873    233332 2 34569999999995    78999999999999999864

>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=99.46  E-value=4.5e-13  Score=115.26  Aligned_cols=234  Identities=17%  Similarity=0.209  Sum_probs=163.0

Q ss_pred             ceeEEEEccCCCEEEEeeCCCcEEEEeecCCCceEEEEecCcccCeEEEEeeCCCCCCEEEEEeCCCeEEEEEcCCCCce
Q 022111           13 TVHDVAMDFYGKRLATASSDSSIKIIGLSNSASQHLATLKGHRGPVWQVAWAHPKFGSILASCSYDGQVIIWKEGNQNDW   92 (302)
Q Consensus        13 ~v~~~~~s~~~~~l~s~~~d~~v~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~s~D~~i~iwd~~~~~~~   92 (302)
                      .-+.+.++.+|++|+.||.-|-+..+|+.+...  ...+.- ...|.++.|-+.  .++ +++....-+.|||-. +   
T Consensus       131 GPY~~~ytrnGrhlllgGrKGHlAa~Dw~t~~L--~~Ei~v-~Etv~Dv~~LHn--eq~-~AVAQK~y~yvYD~~-G---  200 (545)
T KOG1272|consen  131 GPYHLDYTRNGRHLLLGGRKGHLAAFDWVTKKL--HFEINV-METVRDVTFLHN--EQF-FAVAQKKYVYVYDNN-G---  200 (545)
T ss_pred             CCeeeeecCCccEEEecCCccceeeeeccccee--eeeeeh-hhhhhhhhhhcc--hHH-HHhhhhceEEEecCC-C---
Confidence            446688999999999999999999999865432  223322 235888999763  344 455667789999843 2   


Q ss_pred             eEEEEecCCCCCeeEEEecCCCCCcEEEEEecCCcEEEEEecCCCCeeeeeecccCCCCeEEEEeCCCCCCCceeecccC
Q 022111           93 TQAHTFNDHKSSVNSIAWAPHELGLSLACGSSDGNISVFTATADGGWDTTRIDQAHPVGVTSVSWAPAMAPGALVGLGLL  172 (302)
Q Consensus        93 ~~~~~~~~h~~~i~~l~~~pd~~~~~l~sg~~d~~v~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~  172 (302)
                      +.++.+..| ..|..+.|-|.  ..+|++++..|.++.-|++.+.-.  ..+. .....+..+.=+|.            
T Consensus       201 tElHClk~~-~~v~rLeFLPy--HfLL~~~~~~G~L~Y~DVS~GklV--a~~~-t~~G~~~vm~qNP~------------  262 (545)
T KOG1272|consen  201 TELHCLKRH-IRVARLEFLPY--HFLLVAASEAGFLKYQDVSTGKLV--ASIR-TGAGRTDVMKQNPY------------  262 (545)
T ss_pred             cEEeehhhc-Cchhhhcccch--hheeeecccCCceEEEeechhhhh--HHHH-ccCCccchhhcCCc------------
Confidence            356666644 56899999997  558999999999998888754321  1111 11222333333342            


Q ss_pred             CCceeEEEeeCCCcEEEEEEecCccccccccccccCCCceeEEEeeCCCCCCccEEEEEecCCeEEEEEeccCCcceeee
Q 022111          173 DPVQKLASCGCDNTVKVWKMYNGIWKMDCFPALQMHSDWVRSVAWAPNLGLPKSTIASASQDGTVVIWTCAKEGEQWEGR  252 (302)
Q Consensus       173 ~~~~~l~s~~~D~~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~l~s~s~D~~i~iwd~~~~~~~~~~~  252 (302)
                        +..+-.|...|+|.+|......    .+-.+-.|.++|.+|++.|+|    .++||.+.|+.++|||++.-...   .
T Consensus       263 --NaVih~GhsnGtVSlWSP~ske----PLvKiLcH~g~V~siAv~~~G----~YMaTtG~Dr~~kIWDlR~~~ql---~  329 (545)
T KOG1272|consen  263 --NAVIHLGHSNGTVSLWSPNSKE----PLVKILCHRGPVSSIAVDRGG----RYMATTGLDRKVKIWDLRNFYQL---H  329 (545)
T ss_pred             --cceEEEcCCCceEEecCCCCcc----hHHHHHhcCCCcceEEECCCC----cEEeecccccceeEeeecccccc---c
Confidence              3567788889999999976542    233345699999999999985    88999999999999999864321   1


Q ss_pred             eeccCCCcEEEEEEccCCCEEEEecCCceEEeeecCC
Q 022111          253 VLKDFKTPVWSVSWSLTGNLLAVADANNVTLWKEAVD  289 (302)
Q Consensus       253 ~~~~~~~~v~~~~~spdg~~la~~~~d~i~~w~~~~~  289 (302)
                      .... ..+...++||.-| +||.+-++.+.||.....
T Consensus       330 t~~t-p~~a~~ls~Sqkg-lLA~~~G~~v~iw~d~~~  364 (545)
T KOG1272|consen  330 TYRT-PHPASNLSLSQKG-LLALSYGDHVQIWKDALK  364 (545)
T ss_pred             eeec-CCCcccccccccc-ceeeecCCeeeeehhhhc
Confidence            1111 3467788998665 567776779999986443

>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]

Probab=99.46  E-value=7.1e-13  Score=106.55  Aligned_cols=147  Identities=24%  Similarity=0.425  Sum_probs=106.8

Q ss_pred             EEEEEeCCCeEEEEEcCCCC-------ceeEEEEecCCCCCeeEEEecCCCCCcEEEEEecCCcEEEEEecCC-CCeeee
Q 022111           71 ILASCSYDGQVIIWKEGNQN-------DWTQAHTFNDHKSSVNSIAWAPHELGLSLACGSSDGNISVFTATAD-GGWDTT  142 (302)
Q Consensus        71 ~l~s~s~D~~i~iwd~~~~~-------~~~~~~~~~~h~~~i~~l~~~pd~~~~~l~sg~~d~~v~~~~~~~~-~~~~~~  142 (302)
                      +|+.|-++|.+.+||+..+.       .++.......|..+|.++.+.+.  ...=++|+.+..+..|.+... +..+..
T Consensus       167 lllaGyEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvlsldyas~--~~rGisgga~dkl~~~Sl~~s~gslq~~  244 (323)
T KOG0322|consen  167 LLLAGYESGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQPVLSLDYASS--CDRGISGGADDKLVMYSLNHSTGSLQIR  244 (323)
T ss_pred             EEEEeccCCeEEEEEccCCceeeccccccccccchhhccCcceeeeechh--hcCCcCCCccccceeeeeccccCccccc
Confidence            46778899999999997642       12223345569999999999764  335677888888889987643 222111


Q ss_pred             -eecccCCCCeEEEEeCCCCCCCceeecccCCCceeEEEeeCCCcEEEEEEecCccccccccccccCCCceeEEEeeCCC
Q 022111          143 -RIDQAHPVGVTSVSWAPAMAPGALVGLGLLDPVQKLASCGCDNTVKVWKMYNGIWKMDCFPALQMHSDWVRSVAWAPNL  221 (302)
Q Consensus       143 -~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~D~~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~  221 (302)
                       +....|+ .|..+..-|+              ++.+||+|-|+.||||..++.    ..+..++-|++.|++++|+|+-
T Consensus       245 ~e~~lknp-Gv~gvrIRpD--------------~KIlATAGWD~RiRVyswrtl----~pLAVLkyHsagvn~vAfspd~  305 (323)
T KOG0322|consen  245 KEITLKNP-GVSGVRIRPD--------------GKILATAGWDHRIRVYSWRTL----NPLAVLKYHSAGVNAVAFSPDC  305 (323)
T ss_pred             ceEEecCC-CccceEEccC--------------CcEEeecccCCcEEEEEeccC----CchhhhhhhhcceeEEEeCCCC
Confidence             1111121 2344444443              589999999999999999875    4566788899999999999984


Q ss_pred             CCCccEEEEEecCCeEEEEEe
Q 022111          222 GLPKSTIASASQDGTVVIWTC  242 (302)
Q Consensus       222 ~~~~~~l~s~s~D~~i~iwd~  242 (302)
                          ..+|++|.|+.|.+|++
T Consensus       306 ----~lmAaaskD~rISLWkL  322 (323)
T KOG0322|consen  306 ----ELMAAASKDARISLWKL  322 (323)
T ss_pred             ----chhhhccCCceEEeeec
Confidence                67999999999999986

>PRK03629 tolB translocation protein TolB; Provisional

Probab=99.45  E-value=4.8e-11  Score=108.14  Aligned_cols=219  Identities=19%  Similarity=0.201  Sum_probs=131.4

Q ss_pred             ccccceeEEEEccCCCEEEEeeC---CCcEEEEeecCCCceEEEEecCcccCeEEEEeeCCCCCCEEEEE-eCCC--eEE
Q 022111            9 GHEDTVHDVAMDFYGKRLATASS---DSSIKIIGLSNSASQHLATLKGHRGPVWQVAWAHPKFGSILASC-SYDG--QVI   82 (302)
Q Consensus         9 ~h~~~v~~~~~s~~~~~l~s~~~---d~~v~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~-s~D~--~i~   82 (302)
                      .+...+...+|+|||+.|+..+.   +..+.+|++..+..+.+..+.+|   +..++|+|+  |+.|+.. +.++  .|.
T Consensus       196 ~~~~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~~l~~~~~~---~~~~~~SPD--G~~La~~~~~~g~~~I~  270 (429)
T PRK03629        196 RSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQVASFPRH---NGAPAFSPD--GSKLAFALSKTGSLNLY  270 (429)
T ss_pred             cCCCceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCeEEccCCCCC---cCCeEECCC--CCEEEEEEcCCCCcEEE
Confidence            45567888999999998886542   35688888865443444444444   446789874  7766643 4455  477


Q ss_pred             EEEcCCCCceeEEEEecCCCCCeeEEEecCCCCCcEEEEEec-CCcEEEEEecCCCCeeeeeecccCCCCeEEEEeCCCC
Q 022111           83 IWKEGNQNDWTQAHTFNDHKSSVNSIAWAPHELGLSLACGSS-DGNISVFTATADGGWDTTRIDQAHPVGVTSVSWAPAM  161 (302)
Q Consensus        83 iwd~~~~~~~~~~~~~~~h~~~i~~l~~~pd~~~~~l~sg~~-d~~v~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~  161 (302)
                      +||+.++.    ...+..+...+....|+||  |..|+..+. ++...+|.+...+. ....+. .+........|+|++
T Consensus       271 ~~d~~tg~----~~~lt~~~~~~~~~~wSPD--G~~I~f~s~~~g~~~Iy~~d~~~g-~~~~lt-~~~~~~~~~~~SpDG  342 (429)
T PRK03629        271 VMDLASGQ----IRQVTDGRSNNTEPTWFPD--SQNLAYTSDQAGRPQVYKVNINGG-APQRIT-WEGSQNQDADVSSDG  342 (429)
T ss_pred             EEECCCCC----EEEccCCCCCcCceEECCC--CCEEEEEeCCCCCceEEEEECCCC-CeEEee-cCCCCccCEEECCCC
Confidence            88886642    2344445556788999998  666766665 45556665432221 111221 122234567788864


Q ss_pred             CCCceeecccCCCceeEEEeeCC---CcEEEEEEecCccccccccccccCCCceeEEEeeCCCCCCccEEEEEecCCe--
Q 022111          162 APGALVGLGLLDPVQKLASCGCD---NTVKVWKMYNGIWKMDCFPALQMHSDWVRSVAWAPNLGLPKSTIASASQDGT--  236 (302)
Q Consensus       162 ~~~~~~~~~~~~~~~~l~s~~~D---~~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~l~s~s~D~~--  236 (302)
                                    +.|+..+.+   ..|.+||+.++..  ..   +.. .....+.+|+||+    ..|+..+.++.  
T Consensus       343 --------------~~Ia~~~~~~g~~~I~~~dl~~g~~--~~---Lt~-~~~~~~p~~SpDG----~~i~~~s~~~~~~  398 (429)
T PRK03629        343 --------------KFMVMVSSNGGQQHIAKQDLATGGV--QV---LTD-TFLDETPSIAPNG----TMVIYSSSQGMGS  398 (429)
T ss_pred             --------------CEEEEEEccCCCceEEEEECCCCCe--EE---eCC-CCCCCCceECCCC----CEEEEEEcCCCce
Confidence                          555554432   3578888876532  11   111 1123467899996    77888887775  


Q ss_pred             -EEEEEeccCCcceeeeeeccCCCcEEEEEEcc
Q 022111          237 -VVIWTCAKEGEQWEGRVLKDFKTPVWSVSWSL  268 (302)
Q Consensus       237 -i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp  268 (302)
                       +.++++....    ...+..+.+.+...+|||
T Consensus       399 ~l~~~~~~G~~----~~~l~~~~~~~~~p~Wsp  427 (429)
T PRK03629        399 VLNLVSTDGRF----KARLPATDGQVKFPAWSP  427 (429)
T ss_pred             EEEEEECCCCC----eEECccCCCCcCCcccCC
Confidence             5566654321    122345566778888887

>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3

Probab=99.44  E-value=8.7e-09  Score=90.88  Aligned_cols=263  Identities=13%  Similarity=0.151  Sum_probs=158.0

Q ss_pred             eEEEEccCCCEEEEeeC----CCcEEEEeecCC--CceEEEEecCcccCeEEEEeeCCCCCCEEEEEe-CCCeEEEEEcC
Q 022111           15 HDVAMDFYGKRLATASS----DSSIKIIGLSNS--ASQHLATLKGHRGPVWQVAWAHPKFGSILASCS-YDGQVIIWKEG   87 (302)
Q Consensus        15 ~~~~~s~~~~~l~s~~~----d~~v~lw~~~~~--~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~s-~D~~i~iwd~~   87 (302)
                      .-+++++++++|.+...    ++.|..|.+...  ..+.+.........-..++++++  +++|+++. .++++.++++.
T Consensus        40 s~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~~~~~~g~~p~~i~~~~~--g~~l~vany~~g~v~v~~l~  117 (345)
T PF10282_consen   40 SWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLNSVPSGGSSPCHIAVDPD--GRFLYVANYGGGSVSVFPLD  117 (345)
T ss_dssp             CCEEE-TTSSEEEEEETTSSTTTEEEEEEEETTTTEEEEEEEEEESSSCEEEEEECTT--SSEEEEEETTTTEEEEEEEC
T ss_pred             ceEEEEeCCCEEEEEEccccCCCCEEEEEECCCcceeEEeeeeccCCCCcEEEEEecC--CCEEEEEEccCCeEEEEEcc
Confidence            34788999999998876    468999998754  33344443322233456888654  67766665 59999999997


Q ss_pred             CCCceeEE-EEec----------CCCCCeeEEEecCCCCCcEEEEEe-cCCcEEEEEecCCC-Ceee-eeecccCCCCeE
Q 022111           88 NQNDWTQA-HTFN----------DHKSSVNSIAWAPHELGLSLACGS-SDGNISVFTATADG-GWDT-TRIDQAHPVGVT  153 (302)
Q Consensus        88 ~~~~~~~~-~~~~----------~h~~~i~~l~~~pd~~~~~l~sg~-~d~~v~~~~~~~~~-~~~~-~~~~~~h~~~v~  153 (302)
                      ........ ..+.          .-....-++.++|+  +++++... ....|.+|++.... .+.. ..+.......-+
T Consensus       118 ~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pd--g~~v~v~dlG~D~v~~~~~~~~~~~l~~~~~~~~~~G~GPR  195 (345)
T PF10282_consen  118 DDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPD--GRFVYVPDLGADRVYVYDIDDDTGKLTPVDSIKVPPGSGPR  195 (345)
T ss_dssp             TTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TT--SSEEEEEETTTTEEEEEEE-TTS-TEEEEEEEECSTTSSEE
T ss_pred             CCcccceeeeecccCCCCCcccccccccceeEEECCC--CCEEEEEecCCCEEEEEEEeCCCceEEEeeccccccCCCCc
Confidence            64322222 1121          11234558899998  55555543 34589999987543 2221 122223344568


Q ss_pred             EEEeCCCCCCCceeecccCCCceeEEEeeCCCcEEEEEEecCcccccccc---cc-cc--CCCceeEEEeeCCCCCCccE
Q 022111          154 SVSWAPAMAPGALVGLGLLDPVQKLASCGCDNTVKVWKMYNGIWKMDCFP---AL-QM--HSDWVRSVAWAPNLGLPKST  227 (302)
Q Consensus       154 ~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~D~~v~iwd~~~~~~~~~~~~---~~-~~--h~~~v~~v~~~p~~~~~~~~  227 (302)
                      .+.|+|++             ...++.+-.+++|.++++......++..+   .+ .+  .......|.++||+   ...
T Consensus       196 h~~f~pdg-------------~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~ispdg---~~l  259 (345)
T PF10282_consen  196 HLAFSPDG-------------KYAYVVNELSNTVSVFDYDPSDGSLTEIQTISTLPEGFTGENAPAEIAISPDG---RFL  259 (345)
T ss_dssp             EEEE-TTS-------------SEEEEEETTTTEEEEEEEETTTTEEEEEEEEESCETTSCSSSSEEEEEE-TTS---SEE
T ss_pred             EEEEcCCc-------------CEEEEecCCCCcEEEEeecccCCceeEEEEeeeccccccccCCceeEEEecCC---CEE
Confidence            89998864             24556677789999999983211222111   11 01  12257889999997   234


Q ss_pred             EEEEecCCeEEEEEeccCCcce-eeeeeccCCCcEEEEEEccCCCEEEEecCC--ceEEeee-cCCceEEEeee
Q 022111          228 IASASQDGTVVIWTCAKEGEQW-EGRVLKDFKTPVWSVSWSLTGNLLAVADAN--NVTLWKE-AVDGEWQQVSV  297 (302)
Q Consensus       228 l~s~s~D~~i~iwd~~~~~~~~-~~~~~~~~~~~v~~~~~spdg~~la~~~~d--~i~~w~~-~~~~~~~~~~~  297 (302)
                      .++...+.+|.+|+++...... ..............++++|+|++|+++..+  .|.+|+. ...|.+.....
T Consensus       260 yvsnr~~~sI~vf~~d~~~g~l~~~~~~~~~G~~Pr~~~~s~~g~~l~Va~~~s~~v~vf~~d~~tG~l~~~~~  333 (345)
T PF10282_consen  260 YVSNRGSNSISVFDLDPATGTLTLVQTVPTGGKFPRHFAFSPDGRYLYVANQDSNTVSVFDIDPDTGKLTPVGS  333 (345)
T ss_dssp             EEEECTTTEEEEEEECTTTTTEEEEEEEEESSSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEE
T ss_pred             EEEeccCCEEEEEEEecCCCceEEEEEEeCCCCCccEEEEeCCCCEEEEEecCCCeEEEEEEeCCCCcEEEecc
Confidence            5566678899999995432111 111112223447899999999999999765  6999998 46788877653

1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.

>PRK05137 tolB translocation protein TolB; Provisional

Probab=99.44  E-value=1.1e-10  Score=106.22  Aligned_cols=203  Identities=16%  Similarity=0.198  Sum_probs=124.2

Q ss_pred             CcEEEEeecCCCceEEEEecCcccCeEEEEeeCCCCCCEEEEEeC---CCeEEEEEcCCCCceeEEEEecCCCCCeeEEE
Q 022111           33 SSIKIIGLSNSASQHLATLKGHRGPVWQVAWAHPKFGSILASCSY---DGQVIIWKEGNQNDWTQAHTFNDHKSSVNSIA  109 (302)
Q Consensus        33 ~~v~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~s~---D~~i~iwd~~~~~~~~~~~~~~~h~~~i~~l~  109 (302)
                      ..|.++|....   ....+..|...+...+|+|+  |+.|+..+.   +..|.+||+.++.    ...+..+.+.+...+
T Consensus       182 ~~l~~~d~dg~---~~~~lt~~~~~v~~p~wSpD--G~~lay~s~~~g~~~i~~~dl~~g~----~~~l~~~~g~~~~~~  252 (435)
T PRK05137        182 KRLAIMDQDGA---NVRYLTDGSSLVLTPRFSPN--RQEITYMSYANGRPRVYLLDLETGQ----RELVGNFPGMTFAPR  252 (435)
T ss_pred             eEEEEECCCCC---CcEEEecCCCCeEeeEECCC--CCEEEEEEecCCCCEEEEEECCCCc----EEEeecCCCcccCcE
Confidence            36777776543   23456677888999999874  788877663   4689999997653    223445666778899


Q ss_pred             ecCCCCCcEE-EEEecCCc--EEEEEecCCCCeeeeeecccCCCCeEEEEeCCCCCCCceeecccCCCceeEEEee-CCC
Q 022111          110 WAPHELGLSL-ACGSSDGN--ISVFTATADGGWDTTRIDQAHPVGVTSVSWAPAMAPGALVGLGLLDPVQKLASCG-CDN  185 (302)
Q Consensus       110 ~~pd~~~~~l-~sg~~d~~--v~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~-~D~  185 (302)
                      |+||  |..| ++.+.++.  |.+||+....   ...+. .+........|+|++              +.|+..+ .++
T Consensus       253 ~SPD--G~~la~~~~~~g~~~Iy~~d~~~~~---~~~Lt-~~~~~~~~~~~spDG--------------~~i~f~s~~~g  312 (435)
T PRK05137        253 FSPD--GRKVVMSLSQGGNTDIYTMDLRSGT---TTRLT-DSPAIDTSPSYSPDG--------------SQIVFESDRSG  312 (435)
T ss_pred             ECCC--CCEEEEEEecCCCceEEEEECCCCc---eEEcc-CCCCccCceeEcCCC--------------CEEEEEECCCC
Confidence            9998  5555 45666666  4455654322   12222 233445668898864              5555444 333


Q ss_pred             --cEEEEEEecCccccccccccccCCCceeEEEeeCCCCCCccEEEEEecC---CeEEEEEeccCCcceeeeeeccCCCc
Q 022111          186 --TVKVWKMYNGIWKMDCFPALQMHSDWVRSVAWAPNLGLPKSTIASASQD---GTVVIWTCAKEGEQWEGRVLKDFKTP  260 (302)
Q Consensus       186 --~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~l~s~s~D---~~i~iwd~~~~~~~~~~~~~~~~~~~  260 (302)
                        .|+++|+.++.     ...+..+...+....|+||+    +.|+..+.+   ..|.+||+.....    ..+.. ...
T Consensus       313 ~~~Iy~~d~~g~~-----~~~lt~~~~~~~~~~~SpdG----~~ia~~~~~~~~~~i~~~d~~~~~~----~~lt~-~~~  378 (435)
T PRK05137        313 SPQLYVMNADGSN-----PRRISFGGGRYSTPVWSPRG----DLIAFTKQGGGQFSIGVMKPDGSGE----RILTS-GFL  378 (435)
T ss_pred             CCeEEEEECCCCC-----eEEeecCCCcccCeEECCCC----CEEEEEEcCCCceEEEEEECCCCce----EeccC-CCC
Confidence              57777765542     11222234456778999996    667666543   2577777643211    12211 224


Q ss_pred             EEEEEEccCCCEEEEecC
Q 022111          261 VWSVSWSLTGNLLAVADA  278 (302)
Q Consensus       261 v~~~~~spdg~~la~~~~  278 (302)
                      +.+.+|+|||+.|+....
T Consensus       379 ~~~p~~spDG~~i~~~~~  396 (435)
T PRK05137        379 VEGPTWAPNGRVIMFFRQ  396 (435)
T ss_pred             CCCCeECCCCCEEEEEEc
Confidence            667899999999887644

>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins

Probab=99.43  E-value=2.1e-11  Score=98.29  Aligned_cols=109  Identities=17%  Similarity=0.358  Sum_probs=77.4

Q ss_pred             CCCeEEEEeCCCCCCCceeecccCCCceeE--EEeeCCCcEEEEEEecCccccccccccccCCCceeEEEeeCCCCCCcc
Q 022111          149 PVGVTSVSWAPAMAPGALVGLGLLDPVQKL--ASCGCDNTVKVWKMYNGIWKMDCFPALQMHSDWVRSVAWAPNLGLPKS  226 (302)
Q Consensus       149 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~~l--~s~~~D~~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~  226 (302)
                      ..+|..++|+|++              ..|  ++|..++.|.|||++.     ..+..+  +...++.|.|+|+|    +
T Consensus        59 ~~~I~~~~WsP~g--------------~~favi~g~~~~~v~lyd~~~-----~~i~~~--~~~~~n~i~wsP~G----~  113 (194)
T PF08662_consen   59 EGPIHDVAWSPNG--------------NEFAVIYGSMPAKVTLYDVKG-----KKIFSF--GTQPRNTISWSPDG----R  113 (194)
T ss_pred             CCceEEEEECcCC--------------CEEEEEEccCCcccEEEcCcc-----cEeEee--cCCCceEEEECCCC----C
Confidence            4469999999975              343  3345678999999963     222333  35678999999996    7


Q ss_pred             EEEEEec---CCeEEEEEeccCCcceeeeeeccCCCcEEEEEEccCCCEEEEecC------C-ceEEeeec
Q 022111          227 TIASASQ---DGTVVIWTCAKEGEQWEGRVLKDFKTPVWSVSWSLTGNLLAVADA------N-NVTLWKEA  287 (302)
Q Consensus       227 ~l~s~s~---D~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~la~~~~------d-~i~~w~~~  287 (302)
                      +|+.++.   .|.|.+||++...     .+.......+..++|||||++|+++..      | +++||+..
T Consensus       114 ~l~~~g~~n~~G~l~~wd~~~~~-----~i~~~~~~~~t~~~WsPdGr~~~ta~t~~r~~~dng~~Iw~~~  179 (194)
T PF08662_consen  114 FLVLAGFGNLNGDLEFWDVRKKK-----KISTFEHSDATDVEWSPDGRYLATATTSPRLRVDNGFKIWSFQ  179 (194)
T ss_pred             EEEEEEccCCCcEEEEEECCCCE-----EeeccccCcEEEEEEcCCCCEEEEEEeccceeccccEEEEEec
Confidence            7888764   4679999998432     122222234789999999999998853      4 79999974

>PRK02889 tolB translocation protein TolB; Provisional

Probab=99.43  E-value=1.7e-10  Score=104.66  Aligned_cols=221  Identities=20%  Similarity=0.255  Sum_probs=130.0

Q ss_pred             cEEEEeecCCCceEEEEecCcccCeEEEEeeCCCCCCEEEEEeCC---CeEEEEEcCCCCceeEEEEecCCCCCeeEEEe
Q 022111           34 SIKIIGLSNSASQHLATLKGHRGPVWQVAWAHPKFGSILASCSYD---GQVIIWKEGNQNDWTQAHTFNDHKSSVNSIAW  110 (302)
Q Consensus        34 ~v~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~s~D---~~i~iwd~~~~~~~~~~~~~~~h~~~i~~l~~  110 (302)
                      .+.++|....   ....+..+...+.+.+|+|+  |+.|+..+.+   ..|.+||+.++..    ..+....+.+...+|
T Consensus       177 ~L~~~D~dG~---~~~~l~~~~~~v~~p~wSPD--G~~la~~s~~~~~~~I~~~dl~~g~~----~~l~~~~g~~~~~~~  247 (427)
T PRK02889        177 QLQISDADGQ---NAQSALSSPEPIISPAWSPD--GTKLAYVSFESKKPVVYVHDLATGRR----RVVANFKGSNSAPAW  247 (427)
T ss_pred             EEEEECCCCC---CceEeccCCCCcccceEcCC--CCEEEEEEccCCCcEEEEEECCCCCE----EEeecCCCCccceEE
Confidence            4555565432   23345567778899999874  7888776643   4589999876532    122233445678899


Q ss_pred             cCCCCCcEEE-EEecCCcEEEEEecCCCCeeeeeecccCCCCeEEEEeCCCCCCCceeecccCCCceeEEEee-CCCcEE
Q 022111          111 APHELGLSLA-CGSSDGNISVFTATADGGWDTTRIDQAHPVGVTSVSWAPAMAPGALVGLGLLDPVQKLASCG-CDNTVK  188 (302)
Q Consensus       111 ~pd~~~~~l~-sg~~d~~v~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~-~D~~v~  188 (302)
                      +||  |..|+ +.+.++...||.....+.. ...+. .+........|+|++              +.|+..+ .++...
T Consensus       248 SPD--G~~la~~~~~~g~~~Iy~~d~~~~~-~~~lt-~~~~~~~~~~wSpDG--------------~~l~f~s~~~g~~~  309 (427)
T PRK02889        248 SPD--GRTLAVALSRDGNSQIYTVNADGSG-LRRLT-QSSGIDTEPFFSPDG--------------RSIYFTSDRGGAPQ  309 (427)
T ss_pred             CCC--CCEEEEEEccCCCceEEEEECCCCC-cEECC-CCCCCCcCeEEcCCC--------------CEEEEEecCCCCcE
Confidence            998  55555 5677888888876532221 12222 233345567899874              5555444 456777


Q ss_pred             EEEEecCccccccccccccCCCceeEEEeeCCCCCCccEEEEEecCC---eEEEEEeccCCcceeeeeeccCCCcEEEEE
Q 022111          189 VWKMYNGIWKMDCFPALQMHSDWVRSVAWAPNLGLPKSTIASASQDG---TVVIWTCAKEGEQWEGRVLKDFKTPVWSVS  265 (302)
Q Consensus       189 iwd~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~l~s~s~D~---~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~  265 (302)
                      ||.+.........+ ++.  .......+|+||+    +.|+..+.++   .|.+||+.....    ..+.. .....+.+
T Consensus       310 Iy~~~~~~g~~~~l-t~~--g~~~~~~~~SpDG----~~Ia~~s~~~g~~~I~v~d~~~g~~----~~lt~-~~~~~~p~  377 (427)
T PRK02889        310 IYRMPASGGAAQRV-TFT--GSYNTSPRISPDG----KLLAYISRVGGAFKLYVQDLATGQV----TALTD-TTRDESPS  377 (427)
T ss_pred             EEEEECCCCceEEE-ecC--CCCcCceEECCCC----CEEEEEEccCCcEEEEEEECCCCCe----EEccC-CCCccCce
Confidence            77765221111111 122  2334467899996    6777766554   699999865321    11221 12345789


Q ss_pred             EccCCCEEEEecCC--ceEEeeecCCceEE
Q 022111          266 WSLTGNLLAVADAN--NVTLWKEAVDGEWQ  293 (302)
Q Consensus       266 ~spdg~~la~~~~d--~i~~w~~~~~~~~~  293 (302)
                      |+|||++|+.+..+  .-.++-+..+|...
T Consensus       378 ~spdg~~l~~~~~~~g~~~l~~~~~~g~~~  407 (427)
T PRK02889        378 FAPNGRYILYATQQGGRSVLAAVSSDGRIK  407 (427)
T ss_pred             ECCCCCEEEEEEecCCCEEEEEEECCCCce
Confidence            99999999888654  23455554455533

>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]

Probab=99.43  E-value=6.5e-11  Score=98.74  Aligned_cols=253  Identities=17%  Similarity=0.267  Sum_probs=163.8

Q ss_pred             cceeEEEEccCCCEEEEeeCCCcEEEEeecCCC-c--eEEEEecCcc------------cCeEEEEeeCCCCCCEEEEEe
Q 022111           12 DTVHDVAMDFYGKRLATASSDSSIKIIGLSNSA-S--QHLATLKGHR------------GPVWQVAWAHPKFGSILASCS   76 (302)
Q Consensus        12 ~~v~~~~~s~~~~~l~s~~~d~~v~lw~~~~~~-~--~~~~~~~~h~------------~~v~~v~~~~~~~~~~l~s~s   76 (302)
                      +.+.++-|+-+|.+||+|..+|.|-++.-+... .  .....+..|+            ..|..++|..+.....+....
T Consensus        26 diis~vef~~~Ge~LatGdkgGRVv~f~r~~~~~~ey~~~t~fqshepEFDYLkSleieEKinkIrw~~~~n~a~FLlst  105 (433)
T KOG1354|consen   26 DIISAVEFDHYGERLATGDKGGRVVLFEREKLYKGEYNFQTEFQSHEPEFDYLKSLEIEEKINKIRWLDDGNLAEFLLST  105 (433)
T ss_pred             cceeeEEeecccceEeecCCCCeEEEeecccccccceeeeeeeeccCcccchhhhhhhhhhhhhceecCCCCccEEEEec
Confidence            457788999999999999999999999753221 1  1223344443            457788997765555666778


Q ss_pred             CCCeEEEEEcCCCCc--------------------------------eeEEEEe-cCCCCCeeEEEecCCCCCcEEEEEe
Q 022111           77 YDGQVIIWKEGNQND--------------------------------WTQAHTF-NDHKSSVNSIAWAPHELGLSLACGS  123 (302)
Q Consensus        77 ~D~~i~iwd~~~~~~--------------------------------~~~~~~~-~~h~~~i~~l~~~pd~~~~~l~sg~  123 (302)
                      .|++|++|.+.....                                ..+...+ ..|.--|+++.++.|  +..+++ +
T Consensus       106 NdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaHtyhiNSIS~NsD--~Et~lS-A  182 (433)
T KOG1354|consen  106 NDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAHTYHINSISVNSD--KETFLS-A  182 (433)
T ss_pred             CCcceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccccceeEeeeeeecCc--cceEee-c
Confidence            999999998753221                                0111122 357778999999887  445665 4


Q ss_pred             cCCcEEEEEecC-CCCeeeeeecccCC-----CCeEEEEeCCCCCCCceeecccCCCceeEEEeeCCCcEEEEEEecCcc
Q 022111          124 SDGNISVFTATA-DGGWDTTRIDQAHP-----VGVTSVSWAPAMAPGALVGLGLLDPVQKLASCGCDNTVKVWKMYNGIW  197 (302)
Q Consensus       124 ~d~~v~~~~~~~-~~~~~~~~~~~~h~-----~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~D~~v~iwd~~~~~~  197 (302)
                      +|-.|.+|.+.- +..+.+..+. .+.     .-|++..|+|..             ...|+-.+..|+|+|-|++....
T Consensus       183 DdLRINLWnlei~d~sFnIVDIK-P~nmEeLteVITsaEFhp~~-------------cn~f~YSSSKGtIrLcDmR~~aL  248 (433)
T KOG1354|consen  183 DDLRINLWNLEIIDQSFNIVDIK-PANMEELTEVITSAEFHPHH-------------CNVFVYSSSKGTIRLCDMRQSAL  248 (433)
T ss_pred             cceeeeeccccccCCceeEEEcc-ccCHHHHHHHHhhhccCHhH-------------ccEEEEecCCCcEEEeechhhhh
Confidence            688999998863 3345555443 332     247788888864             35788888899999999984311


Q ss_pred             -----cccccc-------ccccCCCceeEEEeeCCCCCCccEEEEEecCCeEEEEEeccCCcceeeeeecc---------
Q 022111          198 -----KMDCFP-------ALQMHSDWVRSVAWAPNLGLPKSTIASASQDGTVVIWTCAKEGEQWEGRVLKD---------  256 (302)
Q Consensus       198 -----~~~~~~-------~~~~h~~~v~~v~~~p~~~~~~~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~---------  256 (302)
                           ++-..+       -|.+--..|.++.|+++|    +++++-+. -+|++||+..+..+.....+.+         
T Consensus       249 Cd~hsKlfEepedp~~rsffseiIsSISDvKFs~sG----ryilsRDy-ltvk~wD~nme~~pv~t~~vh~~lr~kLc~l  323 (433)
T KOG1354|consen  249 CDAHSKLFEEPEDPSSRSFFSEIISSISDVKFSHSG----RYILSRDY-LTVKLWDLNMEAKPVETYPVHEYLRSKLCSL  323 (433)
T ss_pred             hcchhhhhccccCCcchhhHHHHhhhhhceEEccCC----cEEEEecc-ceeEEEeccccCCcceEEeehHhHHHHHHHH
Confidence                 100000       011122358899999985    77887643 4799999966543321111111         


Q ss_pred             C-CCc---EEEEEEccCCCEEEEecCC-ceEEeee
Q 022111          257 F-KTP---VWSVSWSLTGNLLAVADAN-NVTLWKE  286 (302)
Q Consensus       257 ~-~~~---v~~~~~spdg~~la~~~~d-~i~~w~~  286 (302)
                      + .+.   -..++||-++.++.+|+=+ ..++++.
T Consensus       324 YEnD~IfdKFec~~sg~~~~v~TGsy~n~frvf~~  358 (433)
T KOG1354|consen  324 YENDAIFDKFECSWSGNDSYVMTGSYNNVFRVFNL  358 (433)
T ss_pred             hhccchhheeEEEEcCCcceEecccccceEEEecC
Confidence            1 112   2368999999999999766 5888884

>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]

Probab=99.41  E-value=1.7e-12  Score=113.58  Aligned_cols=96  Identities=26%  Similarity=0.411  Sum_probs=79.5

Q ss_pred             ccceeEEEEccCCCEEEEeeCCCcEEEEeecCCCceEEEEecCcccCeEEEEeeCCCCCCEEEEEeCCCeEEEEEcCCCC
Q 022111           11 EDTVHDVAMDFYGKRLATASSDSSIKIIGLSNSASQHLATLKGHRGPVWQVAWAHPKFGSILASCSYDGQVIIWKEGNQN   90 (302)
Q Consensus        11 ~~~v~~~~~s~~~~~l~s~~~d~~v~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~s~D~~i~iwd~~~~~   90 (302)
                      ++.|..++|++||++||+.+.||.+||+++...  +.+..++.--+...|++|+|+  |++|++|++|-.|.+|.+.+. 
T Consensus       290 ~g~in~f~FS~DG~~LA~VSqDGfLRvF~fdt~--eLlg~mkSYFGGLLCvcWSPD--GKyIvtGGEDDLVtVwSf~er-  364 (636)
T KOG2394|consen  290 EGSINEFAFSPDGKYLATVSQDGFLRIFDFDTQ--ELLGVMKSYFGGLLCVCWSPD--GKYIVTGGEDDLVTVWSFEER-  364 (636)
T ss_pred             cccccceeEcCCCceEEEEecCceEEEeeccHH--HHHHHHHhhccceEEEEEcCC--ccEEEecCCcceEEEEEeccc-
Confidence            347889999999999999999999999999753  333445555577899999975  999999999999999998765 


Q ss_pred             ceeEEEEecCCCCCeeEEEecCC
Q 022111           91 DWTQAHTFNDHKSSVNSIAWAPH  113 (302)
Q Consensus        91 ~~~~~~~~~~h~~~i~~l~~~pd  113 (302)
                        +.+..=.+|+.-|+.|+|.|.
T Consensus       365 --RVVARGqGHkSWVs~VaFDpy  385 (636)
T KOG2394|consen  365 --RVVARGQGHKSWVSVVAFDPY  385 (636)
T ss_pred             --eEEEeccccccceeeEeeccc
Confidence              245555689999999999763

>KOG1334 consensus WD40 repeat protein [General function prediction only]

Probab=99.39  E-value=5.5e-12  Score=109.28  Aligned_cols=217  Identities=19%  Similarity=0.242  Sum_probs=152.9

Q ss_pred             EEecCcccCeEEEEeeCCCCCCEEEEEeCCCeEEEEEcCCCCceeEEEEecCCCCCeeEEEecCCCCCcEEEEEecCCcE
Q 022111           49 ATLKGHRGPVWQVAWAHPKFGSILASCSYDGQVIIWKEGNQNDWTQAHTFNDHKSSVNSIAWAPHELGLSLACGSSDGNI  128 (302)
Q Consensus        49 ~~~~~h~~~v~~v~~~~~~~~~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~h~~~i~~l~~~pd~~~~~l~sg~~d~~v  128 (302)
                      ..|..|.+-|..|.|..  .|+.|+|+|.|.++.+||......  .+.-..+|...|....|-|......+++++.||.+
T Consensus       136 ~kL~~H~GcVntV~FN~--~Gd~l~SgSDD~~vv~WdW~~~~~--~l~f~SGH~~NvfQaKFiP~s~d~ti~~~s~dgqv  211 (559)
T KOG1334|consen  136 KKLNKHKGCVNTVHFNQ--RGDVLASGSDDLQVVVWDWVSGSP--KLSFESGHCNNVFQAKFIPFSGDRTIVTSSRDGQV  211 (559)
T ss_pred             hcccCCCCccceeeecc--cCceeeccCccceEEeehhhccCc--ccccccccccchhhhhccCCCCCcCceeccccCce
Confidence            46788999999999975  489999999999999999866542  22223468888888888887655679999999999


Q ss_pred             EEEEecCCCCeeeeeecccCCCCeEEEEeCCCCCCCceeecccCCCceeEEEeeCCCcEEEEEEecCccccccccccccC
Q 022111          129 SVFTATADGGWDTTRIDQAHPVGVTSVSWAPAMAPGALVGLGLLDPVQKLASCGCDNTVKVWKMYNGIWKMDCFPALQMH  208 (302)
Q Consensus       129 ~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~D~~v~iwd~~~~~~~~~~~~~~~~h  208 (302)
                      ++=.+...+..........|...|..++.-|..             -.-|.|||.|+.+.=+|++...-..... +-..+
T Consensus       212 r~s~i~~t~~~e~t~rl~~h~g~vhklav~p~s-------------p~~f~S~geD~~v~~~Dlr~~~pa~~~~-cr~~~  277 (559)
T KOG1334|consen  212 RVSEILETGYVENTKRLAPHEGPVHKLAVEPDS-------------PKPFLSCGEDAVVFHIDLRQDVPAEKFV-CREAD  277 (559)
T ss_pred             eeeeeccccceecceecccccCccceeeecCCC-------------CCcccccccccceeeeeeccCCccceee-eeccC
Confidence            987665544443222223677778777776653             2568999999999999998753221211 22233


Q ss_pred             CC---ceeEEEeeCCCCCCccEEEEEecCCeEEEEEeccCCcce---------eeeeeccCCCcEEEEEEccCC-CEEEE
Q 022111          209 SD---WVRSVAWAPNLGLPKSTIASASQDGTVVIWTCAKEGEQW---------EGRVLKDFKTPVWSVSWSLTG-NLLAV  275 (302)
Q Consensus       209 ~~---~v~~v~~~p~~~~~~~~l~s~s~D~~i~iwd~~~~~~~~---------~~~~~~~~~~~v~~~~~spdg-~~la~  275 (302)
                      +.   ..++++.+|..   .+.+++|+.|..+|+||.+.-....         ...+..+....|.+++||.+| .+||+
T Consensus       278 ~~~~v~L~~Ia~~P~n---t~~faVgG~dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~v~ITgl~Ysh~~sElLaS  354 (559)
T KOG1334|consen  278 EKERVGLYTIAVDPRN---TNEFAVGGSDQFARVYDQRRIDKEENNGVLDKFCPHHLVEDDPVNITGLVYSHDGSELLAS  354 (559)
T ss_pred             CccceeeeeEecCCCC---ccccccCChhhhhhhhcccchhhccccchhhhcCCccccccCcccceeEEecCCccceeee
Confidence            33   46788888864   4689999999999999987532110         001112344568999999766 55565


Q ss_pred             ecCCceEEeee
Q 022111          276 ADANNVTLWKE  286 (302)
Q Consensus       276 ~~~d~i~~w~~  286 (302)
                      -.+..|.|+.-
T Consensus       355 YnDe~IYLF~~  365 (559)
T KOG1334|consen  355 YNDEDIYLFNK  365 (559)
T ss_pred             ecccceEEecc
Confidence            55558999953

>KOG3881 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.38  E-value=6.6e-11  Score=100.07  Aligned_cols=194  Identities=14%  Similarity=0.149  Sum_probs=132.6

Q ss_pred             CEEEEeeCCCcEEEEeecCCC--ceEEEEecCcccCeEEEEeeCCCCCCEEEEEeCC--CeEEEEEcCCCCceeEEEEec
Q 022111           24 KRLATASSDSSIKIIGLSNSA--SQHLATLKGHRGPVWQVAWAHPKFGSILASCSYD--GQVIIWKEGNQNDWTQAHTFN   99 (302)
Q Consensus        24 ~~l~s~~~d~~v~lw~~~~~~--~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~s~D--~~i~iwd~~~~~~~~~~~~~~   99 (302)
                      ..|.+|-.+|.+++|....+.  ...+..+.-|. .+..+.-. +....++|+|+..  ..++|||++...   ++.+-+
T Consensus       116 g~Litc~~sG~l~~~~~k~~d~hss~l~~la~g~-g~~~~r~~-~~~p~Iva~GGke~~n~lkiwdle~~~---qiw~aK  190 (412)
T KOG3881|consen  116 GTLITCVSSGNLQVRHDKSGDLHSSKLIKLATGP-GLYDVRQT-DTDPYIVATGGKENINELKIWDLEQSK---QIWSAK  190 (412)
T ss_pred             CEEEEEecCCcEEEEeccCCccccccceeeecCC-ceeeeccC-CCCCceEecCchhcccceeeeecccce---eeeecc
Confidence            467788899999999875322  12333444343 45666654 3456788899999  889999986542   222111


Q ss_pred             C-CC--------CCeeEEEecCCCCCcEEEEEecCCcEEEEEecCCCCeeeeeecccCCCCeEEEEeCCCCCCCceeecc
Q 022111          100 D-HK--------SSVNSIAWAPHELGLSLACGSSDGNISVFTATADGGWDTTRIDQAHPVGVTSVSWAPAMAPGALVGLG  170 (302)
Q Consensus       100 ~-h~--------~~i~~l~~~pd~~~~~l~sg~~d~~v~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~  170 (302)
                      . .+        -.++++.|-|......+|++..-+++++||.+.+. .....+. --+.+++++...|           
T Consensus       191 NvpnD~L~LrVPvW~tdi~Fl~g~~~~~fat~T~~hqvR~YDt~~qR-RPV~~fd-~~E~~is~~~l~p-----------  257 (412)
T KOG3881|consen  191 NVPNDRLGLRVPVWITDIRFLEGSPNYKFATITRYHQVRLYDTRHQR-RPVAQFD-FLENPISSTGLTP-----------  257 (412)
T ss_pred             CCCCccccceeeeeeccceecCCCCCceEEEEecceeEEEecCcccC-cceeEec-cccCcceeeeecC-----------
Confidence            1 01        13467788766445689999999999999987432 1222221 1133455554444           


Q ss_pred             cCCCceeEEEeeCCCcEEEEEEecCccccccccccccCCCceeEEEeeCCCCCCccEEEEEecCCeEEEEEeccC
Q 022111          171 LLDPVQKLASCGCDNTVKVWKMYNGIWKMDCFPALQMHSDWVRSVAWAPNLGLPKSTIASASQDGTVVIWTCAKE  245 (302)
Q Consensus       171 ~~~~~~~l~s~~~D~~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~l~s~s~D~~i~iwd~~~~  245 (302)
                         .+.++++|-.-+.+..||++.+..   ....+.+-.+.|++|..+|.+    ..+|+++-|+.+||+|++++
T Consensus       258 ---~gn~Iy~gn~~g~l~~FD~r~~kl---~g~~~kg~tGsirsih~hp~~----~~las~GLDRyvRIhD~ktr  322 (412)
T KOG3881|consen  258 ---SGNFIYTGNTKGQLAKFDLRGGKL---LGCGLKGITGSIRSIHCHPTH----PVLASCGLDRYVRIHDIKTR  322 (412)
T ss_pred             ---CCcEEEEecccchhheecccCcee---eccccCCccCCcceEEEcCCC----ceEEeeccceeEEEeecccc
Confidence               357899999999999999998632   123467788899999999985    68999999999999999864

>PRK02889 tolB translocation protein TolB; Provisional

Probab=99.38  E-value=1.8e-10  Score=104.40  Aligned_cols=223  Identities=21%  Similarity=0.229  Sum_probs=130.1

Q ss_pred             cccccceeEEEEccCCCEEEEeeCC---CcEEEEeecCCCceEEEEecCcccCeEEEEeeCCCCCCEEE-EEeCCCeEEE
Q 022111            8 TGHEDTVHDVAMDFYGKRLATASSD---SSIKIIGLSNSASQHLATLKGHRGPVWQVAWAHPKFGSILA-SCSYDGQVII   83 (302)
Q Consensus         8 ~~h~~~v~~~~~s~~~~~l~s~~~d---~~v~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~-s~s~D~~i~i   83 (302)
                      ..+...+.+.+|+|||+.|+..+.+   ..|.+||+.++....+.   ...+.+...+|+|+  |+.|+ +.+.++...|
T Consensus       192 ~~~~~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~~l~---~~~g~~~~~~~SPD--G~~la~~~~~~g~~~I  266 (427)
T PRK02889        192 LSSPEPIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGRRRVVA---NFKGSNSAPAWSPD--GRTLAVALSRDGNSQI  266 (427)
T ss_pred             ccCCCCcccceEcCCCCEEEEEEccCCCcEEEEEECCCCCEEEee---cCCCCccceEECCC--CCEEEEEEccCCCceE
Confidence            3566788899999999999877643   34899998765433332   23344567899875  66654 6778888888


Q ss_pred             EEcCCCCceeEEEEecCCCCCeeEEEecCCCCCcEEEEEec-CCcEEEEEecCCC-CeeeeeecccCCCCeEEEEeCCCC
Q 022111           84 WKEGNQNDWTQAHTFNDHKSSVNSIAWAPHELGLSLACGSS-DGNISVFTATADG-GWDTTRIDQAHPVGVTSVSWAPAM  161 (302)
Q Consensus        84 wd~~~~~~~~~~~~~~~h~~~i~~l~~~pd~~~~~l~sg~~-d~~v~~~~~~~~~-~~~~~~~~~~h~~~v~~~~~~~~~  161 (302)
                      |.++...  .....+..+........|+||  |..|+..+. ++...+|.+...+ .......   +........|+|++
T Consensus       267 y~~d~~~--~~~~~lt~~~~~~~~~~wSpD--G~~l~f~s~~~g~~~Iy~~~~~~g~~~~lt~---~g~~~~~~~~SpDG  339 (427)
T PRK02889        267 YTVNADG--SGLRRLTQSSGIDTEPFFSPD--GRSIYFTSDRGGAPQIYRMPASGGAAQRVTF---TGSYNTSPRISPDG  339 (427)
T ss_pred             EEEECCC--CCcEECCCCCCCCcCeEEcCC--CCEEEEEecCCCCcEEEEEECCCCceEEEec---CCCCcCceEECCCC
Confidence            8763221  123445555556677889998  666665554 5677777665322 2211111   11223356788864


Q ss_pred             CCCceeecccCCCceeEEEeeCCC---cEEEEEEecCccccccccccccCCCceeEEEeeCCCCCCccEEEEEecCC-eE
Q 022111          162 APGALVGLGLLDPVQKLASCGCDN---TVKVWKMYNGIWKMDCFPALQMHSDWVRSVAWAPNLGLPKSTIASASQDG-TV  237 (302)
Q Consensus       162 ~~~~~~~~~~~~~~~~l~s~~~D~---~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~l~s~s~D~-~i  237 (302)
                                    +.|+..+.++   .|.+||+.++...     .+.. .......+|+||+    +.|+..+.++ .-
T Consensus       340 --------------~~Ia~~s~~~g~~~I~v~d~~~g~~~-----~lt~-~~~~~~p~~spdg----~~l~~~~~~~g~~  395 (427)
T PRK02889        340 --------------KLLAYISRVGGAFKLYVQDLATGQVT-----ALTD-TTRDESPSFAPNG----RYILYATQQGGRS  395 (427)
T ss_pred             --------------CEEEEEEccCCcEEEEEEECCCCCeE-----EccC-CCCccCceECCCC----CEEEEEEecCCCE
Confidence                          6666655443   5899998765321     1211 1234678999996    5666666544 32


Q ss_pred             EEEEeccCCcceeeeeeccCCCcEEEEEEcc
Q 022111          238 VIWTCAKEGEQWEGRVLKDFKTPVWSVSWSL  268 (302)
Q Consensus       238 ~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp  268 (302)
                      .++-+...+..  ...+....+.+...+|||
T Consensus       396 ~l~~~~~~g~~--~~~l~~~~g~~~~p~wsp  424 (427)
T PRK02889        396 VLAAVSSDGRI--KQRLSVQGGDVREPSWGP  424 (427)
T ss_pred             EEEEEECCCCc--eEEeecCCCCCCCCccCC
Confidence            33332221111  112223344566677876

>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=99.37  E-value=2.3e-10  Score=96.29  Aligned_cols=187  Identities=17%  Similarity=0.244  Sum_probs=125.3

Q ss_pred             CEEEEeeCC--CcEEEEeecCCCceEEEEecCcccCeEEEEeeCCCCCCEEEEEeCCCeEEEEEcCCCCceeEEEEecCC
Q 022111           24 KRLATASSD--SSIKIIGLSNSASQHLATLKGHRGPVWQVAWAHPKFGSILASCSYDGQVIIWKEGNQNDWTQAHTFNDH  101 (302)
Q Consensus        24 ~~l~s~~~d--~~v~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~h  101 (302)
                      ..+|..+.+  +.++++++.....-+-..+   ..+|.+|+++.    ++|+.+-++. |.|||+++.   +.++++..-
T Consensus        57 SLvaiV~~~qpr~Lkv~~~Kk~~~ICe~~f---pt~IL~VrmNr----~RLvV~Lee~-IyIydI~~M---klLhTI~t~  125 (391)
T KOG2110|consen   57 SLVAIVSIKQPRKLKVVHFKKKTTICEIFF---PTSILAVRMNR----KRLVVCLEES-IYIYDIKDM---KLLHTIETT  125 (391)
T ss_pred             ceeEEEecCCCceEEEEEcccCceEEEEec---CCceEEEEEcc----ceEEEEEccc-EEEEecccc---eeehhhhcc
Confidence            445544443  4477777654332222222   34688898853    5677777765 999999876   356665543


Q ss_pred             -CCCeeEEEecCCCCCcEEEEE--ecCCcEEEEEecCCCCeeeeeecccCCCCeEEEEeCCCCCCCceeecccCCCceeE
Q 022111          102 -KSSVNSIAWAPHELGLSLACG--SSDGNISVFTATADGGWDTTRIDQAHPVGVTSVSWAPAMAPGALVGLGLLDPVQKL  178 (302)
Q Consensus       102 -~~~i~~l~~~pd~~~~~l~sg--~~d~~v~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~l  178 (302)
                       ..+-.-++++|+..+-+||.=  ...|.|.+||...-  .....+. .|...+.+++|+++              |.+|
T Consensus       126 ~~n~~gl~AlS~n~~n~ylAyp~s~t~GdV~l~d~~nl--~~v~~I~-aH~~~lAalafs~~--------------G~ll  188 (391)
T KOG2110|consen  126 PPNPKGLCALSPNNANCYLAYPGSTTSGDVVLFDTINL--QPVNTIN-AHKGPLAALAFSPD--------------GTLL  188 (391)
T ss_pred             CCCccceEeeccCCCCceEEecCCCCCceEEEEEcccc--eeeeEEE-ecCCceeEEEECCC--------------CCEE
Confidence             223335566665434456543  23589999998643  2234444 89999999999987              4899


Q ss_pred             EEeeCCCc-EEEEEEecCccccccccccccCCCceeEEEeeCCCCCCccEEEEEecCCeEEEEEecc
Q 022111          179 ASCGCDNT-VKVWKMYNGIWKMDCFPALQMHSDWVRSVAWAPNLGLPKSTIASASQDGTVVIWTCAK  244 (302)
Q Consensus       179 ~s~~~D~~-v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~l~s~s~D~~i~iwd~~~  244 (302)
                      ||++..|+ |||+.+.+++...+.-+..  -...|.+++|+|+.    .+|++.|..++|.||.+..
T Consensus       189 ATASeKGTVIRVf~v~~G~kl~eFRRG~--~~~~IySL~Fs~ds----~~L~~sS~TeTVHiFKL~~  249 (391)
T KOG2110|consen  189 ATASEKGTVIRVFSVPEGQKLYEFRRGT--YPVSIYSLSFSPDS----QFLAASSNTETVHIFKLEK  249 (391)
T ss_pred             EEeccCceEEEEEEcCCccEeeeeeCCc--eeeEEEEEEECCCC----CeEEEecCCCeEEEEEecc
Confidence            99999998 7899998875322221211  14569999999995    7899999999999999865

>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins

Probab=99.37  E-value=1.5e-10  Score=93.25  Aligned_cols=149  Identities=21%  Similarity=0.444  Sum_probs=98.6

Q ss_pred             EEEEccCCCEEEEeeC---C-------CcEEEEeecCCCceEEEEec-CcccCeEEEEeeCCCCCCEEEE--EeCCCeEE
Q 022111           16 DVAMDFYGKRLATASS---D-------SSIKIIGLSNSASQHLATLK-GHRGPVWQVAWAHPKFGSILAS--CSYDGQVI   82 (302)
Q Consensus        16 ~~~~s~~~~~l~s~~~---d-------~~v~lw~~~~~~~~~~~~~~-~h~~~v~~v~~~~~~~~~~l~s--~s~D~~i~   82 (302)
                      .+.|++.|++|+.-..   |       +...||-+..... .+..+. ...++|.+++|+|+  |+.+|.  |..++.+.
T Consensus        10 ~~~W~~~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~~-~~~~i~l~~~~~I~~~~WsP~--g~~favi~g~~~~~v~   86 (194)
T PF08662_consen   10 KLHWQPSGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKNI-PVESIELKKEGPIHDVAWSPN--GNEFAVIYGSMPAKVT   86 (194)
T ss_pred             EEEecccCCEEEEEEEEeeccCcceEEeeEEEEEEecCCC-ccceeeccCCCceEEEEECcC--CCEEEEEEccCCcccE
Confidence            4678999987765443   1       2355555533221 222332 23457999999875  666544  45678999


Q ss_pred             EEEcCCCCceeEEEEecCCCCCeeEEEecCCCCCcEEEEEecC---CcEEEEEecCCCCeeeeeecccCCCCeEEEEeCC
Q 022111           83 IWKEGNQNDWTQAHTFNDHKSSVNSIAWAPHELGLSLACGSSD---GNISVFTATADGGWDTTRIDQAHPVGVTSVSWAP  159 (302)
Q Consensus        83 iwd~~~~~~~~~~~~~~~h~~~i~~l~~~pd~~~~~l~sg~~d---~~v~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~  159 (302)
                      +||++.    ..+..+  +...++.+.|+|+  |.+|++++.+   |.+.+||.++..  .+...  .| ..++.++|+|
T Consensus        87 lyd~~~----~~i~~~--~~~~~n~i~wsP~--G~~l~~~g~~n~~G~l~~wd~~~~~--~i~~~--~~-~~~t~~~WsP  153 (194)
T PF08662_consen   87 LYDVKG----KKIFSF--GTQPRNTISWSPD--GRFLVLAGFGNLNGDLEFWDVRKKK--KISTF--EH-SDATDVEWSP  153 (194)
T ss_pred             EEcCcc----cEeEee--cCCCceEEEECCC--CCEEEEEEccCCCcEEEEEECCCCE--Eeecc--cc-CcEEEEEEcC
Confidence            999852    344454  4567899999998  7788888754   569999987431  12221  23 3478999999


Q ss_pred             CCCCCceeecccCCCceeEEEeeC------CCcEEEEEEec
Q 022111          160 AMAPGALVGLGLLDPVQKLASCGC------DNTVKVWKMYN  194 (302)
Q Consensus       160 ~~~~~~~~~~~~~~~~~~l~s~~~------D~~v~iwd~~~  194 (302)
                      ++              ++|++++.      |+.++||+...
T Consensus       154 dG--------------r~~~ta~t~~r~~~dng~~Iw~~~G  180 (194)
T PF08662_consen  154 DG--------------RYLATATTSPRLRVDNGFKIWSFQG  180 (194)
T ss_pred             CC--------------CEEEEEEeccceeccccEEEEEecC
Confidence            74              78888764      78899999854

>PRK03629 tolB translocation protein TolB; Provisional

Probab=99.37  E-value=6.8e-10  Score=100.68  Aligned_cols=203  Identities=18%  Similarity=0.227  Sum_probs=120.3

Q ss_pred             cEEEEeecCCCceEEEEecCcccCeEEEEeeCCCCCCEEEEEe---CCCeEEEEEcCCCCceeEEEEecCCCCCeeEEEe
Q 022111           34 SIKIIGLSNSASQHLATLKGHRGPVWQVAWAHPKFGSILASCS---YDGQVIIWKEGNQNDWTQAHTFNDHKSSVNSIAW  110 (302)
Q Consensus        34 ~v~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~s---~D~~i~iwd~~~~~~~~~~~~~~~h~~~i~~l~~  110 (302)
                      .|.++|.+....   ..+..+...+...+|+|+  |+.|+..+   .+..+.+|++.++.. ..+..+   .+.+....|
T Consensus       180 ~l~~~d~dg~~~---~~lt~~~~~~~~p~wSPD--G~~la~~s~~~g~~~i~i~dl~~G~~-~~l~~~---~~~~~~~~~  250 (429)
T PRK03629        180 ELRVSDYDGYNQ---FVVHRSPQPLMSPAWSPD--GSKLAYVTFESGRSALVIQTLANGAV-RQVASF---PRHNGAPAF  250 (429)
T ss_pred             eEEEEcCCCCCC---EEeecCCCceeeeEEcCC--CCEEEEEEecCCCcEEEEEECCCCCe-EEccCC---CCCcCCeEE
Confidence            677888765332   234445667899999875  78877654   345788999866431 222223   334557899


Q ss_pred             cCCCCCcEEEEE-ecCC--cEEEEEecCCCCeeeeeecccCCCCeEEEEeCCCCCCCceeecccCCCceeEEEeeC-CCc
Q 022111          111 APHELGLSLACG-SSDG--NISVFTATADGGWDTTRIDQAHPVGVTSVSWAPAMAPGALVGLGLLDPVQKLASCGC-DNT  186 (302)
Q Consensus       111 ~pd~~~~~l~sg-~~d~--~v~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~-D~~  186 (302)
                      +||  |..|+.. +.++  .|.+||+.... .  ..+. .+...+....|+|++              +.|+..+. ++.
T Consensus       251 SPD--G~~La~~~~~~g~~~I~~~d~~tg~-~--~~lt-~~~~~~~~~~wSPDG--------------~~I~f~s~~~g~  310 (429)
T PRK03629        251 SPD--GSKLAFALSKTGSLNLYVMDLASGQ-I--RQVT-DGRSNNTEPTWFPDS--------------QNLAYTSDQAGR  310 (429)
T ss_pred             CCC--CCEEEEEEcCCCCcEEEEEECCCCC-E--EEcc-CCCCCcCceEECCCC--------------CEEEEEeCCCCC
Confidence            998  5566644 4444  47777775432 1  2222 223456778999874              55655544 455


Q ss_pred             EEEEEE--ecCccccccccccccCCCceeEEEeeCCCCCCccEEEEEecC---CeEEEEEeccCCcceeeeeeccCCCcE
Q 022111          187 VKVWKM--YNGIWKMDCFPALQMHSDWVRSVAWAPNLGLPKSTIASASQD---GTVVIWTCAKEGEQWEGRVLKDFKTPV  261 (302)
Q Consensus       187 v~iwd~--~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~l~s~s~D---~~i~iwd~~~~~~~~~~~~~~~~~~~v  261 (302)
                      .+||.+  .++.     ...+..+.....+..|+||+    +.|+..+.+   ..|.+||+.....    ..+... ...
T Consensus       311 ~~Iy~~d~~~g~-----~~~lt~~~~~~~~~~~SpDG----~~Ia~~~~~~g~~~I~~~dl~~g~~----~~Lt~~-~~~  376 (429)
T PRK03629        311 PQVYKVNINGGA-----PQRITWEGSQNQDADVSSDG----KFMVMVSSNGGQQHIAKQDLATGGV----QVLTDT-FLD  376 (429)
T ss_pred             ceEEEEECCCCC-----eEEeecCCCCccCEEECCCC----CEEEEEEccCCCceEEEEECCCCCe----EEeCCC-CCC
Confidence            566644  4332     11222233445678999996    566665443   3577888765321    122211 123


Q ss_pred             EEEEEccCCCEEEEecCC
Q 022111          262 WSVSWSLTGNLLAVADAN  279 (302)
Q Consensus       262 ~~~~~spdg~~la~~~~d  279 (302)
                      .+.+|||||++|+.++.+
T Consensus       377 ~~p~~SpDG~~i~~~s~~  394 (429)
T PRK03629        377 ETPSIAPNGTMVIYSSSQ  394 (429)
T ss_pred             CCceECCCCCEEEEEEcC
Confidence            467899999999888765

>PRK04922 tolB translocation protein TolB; Provisional

Probab=99.35  E-value=4.4e-10  Score=102.20  Aligned_cols=211  Identities=17%  Similarity=0.224  Sum_probs=124.0

Q ss_pred             CcEEEEeecCCCceEEEEecCcccCeEEEEeeCCCCCCEEEEEeC---CCeEEEEEcCCCCceeEEEEecCCCCCeeEEE
Q 022111           33 SSIKIIGLSNSASQHLATLKGHRGPVWQVAWAHPKFGSILASCSY---DGQVIIWKEGNQNDWTQAHTFNDHKSSVNSIA  109 (302)
Q Consensus        33 ~~v~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~s~---D~~i~iwd~~~~~~~~~~~~~~~h~~~i~~l~  109 (302)
                      .+|.+||.....   ...+..|...+...+|+|+  |+.|+.++.   +..|.+||+.++..    ..+....+...+.+
T Consensus       184 ~~l~i~D~~g~~---~~~lt~~~~~v~~p~wSpD--g~~la~~s~~~~~~~l~~~dl~~g~~----~~l~~~~g~~~~~~  254 (433)
T PRK04922        184 YALQVADSDGYN---PQTILRSAEPILSPAWSPD--GKKLAYVSFERGRSAIYVQDLATGQR----ELVASFRGINGAPS  254 (433)
T ss_pred             EEEEEECCCCCC---ceEeecCCCccccccCCCC--CCEEEEEecCCCCcEEEEEECCCCCE----EEeccCCCCccCce
Confidence            358888875432   2345566778889999874  788887764   34699999876532    22333444556889


Q ss_pred             ecCCCCCcEEE-EEecCC--cEEEEEecCCCCeeeeeecccCCCCeEEEEeCCCCCCCceeecccCCCceeEEEee-CCC
Q 022111          110 WAPHELGLSLA-CGSSDG--NISVFTATADGGWDTTRIDQAHPVGVTSVSWAPAMAPGALVGLGLLDPVQKLASCG-CDN  185 (302)
Q Consensus       110 ~~pd~~~~~l~-sg~~d~--~v~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~-~D~  185 (302)
                      |+||  |..|+ +.+.++  .|.+|++.... .  ..+. .+......+.|+|++              +.|+.++ .++
T Consensus       255 ~SpD--G~~l~~~~s~~g~~~Iy~~d~~~g~-~--~~lt-~~~~~~~~~~~spDG--------------~~l~f~sd~~g  314 (433)
T PRK04922        255 FSPD--GRRLALTLSRDGNPEIYVMDLGSRQ-L--TRLT-NHFGIDTEPTWAPDG--------------KSIYFTSDRGG  314 (433)
T ss_pred             ECCC--CCEEEEEEeCCCCceEEEEECCCCC-e--EECc-cCCCCccceEECCCC--------------CEEEEEECCCC
Confidence            9998  54554 555555  47777775432 1  2222 333344567898864              5555554 455


Q ss_pred             c--EEEEEEecCccccccccccccCCCceeEEEeeCCCCCCccEEEEEecCC---eEEEEEeccCCcceeeeeeccCCCc
Q 022111          186 T--VKVWKMYNGIWKMDCFPALQMHSDWVRSVAWAPNLGLPKSTIASASQDG---TVVIWTCAKEGEQWEGRVLKDFKTP  260 (302)
Q Consensus       186 ~--v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~l~s~s~D~---~i~iwd~~~~~~~~~~~~~~~~~~~  260 (302)
                      .  |+++|+.++..  .   .+..+.......+|+||+    +.|+..+.++   .|.+||+.....    ..+.. ...
T Consensus       315 ~~~iy~~dl~~g~~--~---~lt~~g~~~~~~~~SpDG----~~Ia~~~~~~~~~~I~v~d~~~g~~----~~Lt~-~~~  380 (433)
T PRK04922        315 RPQIYRVAASGGSA--E---RLTFQGNYNARASVSPDG----KKIAMVHGSGGQYRIAVMDLSTGSV----RTLTP-GSL  380 (433)
T ss_pred             CceEEEEECCCCCe--E---EeecCCCCccCEEECCCC----CEEEEEECCCCceeEEEEECCCCCe----EECCC-CCC
Confidence            5  44455544421  1   111223345578999996    5666554332   588999865321    12221 123


Q ss_pred             EEEEEEccCCCEEEEecCC--c--eEEeee
Q 022111          261 VWSVSWSLTGNLLAVADAN--N--VTLWKE  286 (302)
Q Consensus       261 v~~~~~spdg~~la~~~~d--~--i~~w~~  286 (302)
                      ..+.+|+|||++|+..+.+  .  |.+++.
T Consensus       381 ~~~p~~spdG~~i~~~s~~~g~~~L~~~~~  410 (433)
T PRK04922        381 DESPSFAPNGSMVLYATREGGRGVLAAVST  410 (433)
T ss_pred             CCCceECCCCCEEEEEEecCCceEEEEEEC
Confidence            4467999999988777553  2  455544

>PRK05137 tolB translocation protein TolB; Provisional

Probab=99.35  E-value=5e-10  Score=101.91  Aligned_cols=218  Identities=17%  Similarity=0.165  Sum_probs=128.8

Q ss_pred             ccccccceeEEEEccCCCEEEEeeC---CCcEEEEeecCCCceEEEEecCcccCeEEEEeeCCCCCCEE-EEEeCCCe--
Q 022111            7 ETGHEDTVHDVAMDFYGKRLATASS---DSSIKIIGLSNSASQHLATLKGHRGPVWQVAWAHPKFGSIL-ASCSYDGQ--   80 (302)
Q Consensus         7 ~~~h~~~v~~~~~s~~~~~l~s~~~---d~~v~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l-~s~s~D~~--   80 (302)
                      ...|...+...+|+|||+.|+..+.   +..|++|++..+..+   .+..+.+.+...+|+|+  |+.| ++.+.++.  
T Consensus       197 lt~~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~~---~l~~~~g~~~~~~~SPD--G~~la~~~~~~g~~~  271 (435)
T PRK05137        197 LTDGSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQRE---LVGNFPGMTFAPRFSPD--GRKVVMSLSQGGNTD  271 (435)
T ss_pred             EecCCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcEE---EeecCCCcccCcEECCC--CCEEEEEEecCCCce
Confidence            3467778999999999998887663   467999998654332   34455666778899874  6655 56667766  


Q ss_pred             EEEEEcCCCCceeEEEEecCCCCCeeEEEecCCCCCcEEEEEec-CC--cEEEEEecCCCCeeeeeecccCCCCeEEEEe
Q 022111           81 VIIWKEGNQNDWTQAHTFNDHKSSVNSIAWAPHELGLSLACGSS-DG--NISVFTATADGGWDTTRIDQAHPVGVTSVSW  157 (302)
Q Consensus        81 i~iwd~~~~~~~~~~~~~~~h~~~i~~l~~~pd~~~~~l~sg~~-d~--~v~~~~~~~~~~~~~~~~~~~h~~~v~~~~~  157 (302)
                      |.+||+.++    ....+..+........|+||  |..|+..+. ++  .|.+++.... ..  ..+. .+...+....|
T Consensus       272 Iy~~d~~~~----~~~~Lt~~~~~~~~~~~spD--G~~i~f~s~~~g~~~Iy~~d~~g~-~~--~~lt-~~~~~~~~~~~  341 (435)
T PRK05137        272 IYTMDLRSG----TTTRLTDSPAIDTSPSYSPD--GSQIVFESDRSGSPQLYVMNADGS-NP--RRIS-FGGGRYSTPVW  341 (435)
T ss_pred             EEEEECCCC----ceEEccCCCCccCceeEcCC--CCEEEEEECCCCCCeEEEEECCCC-Ce--EEee-cCCCcccCeEE
Confidence            445566554    23445556666778999998  566776653 33  5666665422 22  1221 12334556789


Q ss_pred             CCCCCCCceeecccCCCceeEEEeeCC---CcEEEEEEecCccccccccccccCCCceeEEEeeCCCCCCccEEEEEecC
Q 022111          158 APAMAPGALVGLGLLDPVQKLASCGCD---NTVKVWKMYNGIWKMDCFPALQMHSDWVRSVAWAPNLGLPKSTIASASQD  234 (302)
Q Consensus       158 ~~~~~~~~~~~~~~~~~~~~l~s~~~D---~~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~l~s~s~D  234 (302)
                      +|++              +.|+..+.+   ..|.+||+.++..     ..+. ....+.+.+|+||+    +.|+..+.+
T Consensus       342 SpdG--------------~~ia~~~~~~~~~~i~~~d~~~~~~-----~~lt-~~~~~~~p~~spDG----~~i~~~~~~  397 (435)
T PRK05137        342 SPRG--------------DLIAFTKQGGGQFSIGVMKPDGSGE-----RILT-SGFLVEGPTWAPNG----RVIMFFRQT  397 (435)
T ss_pred             CCCC--------------CEEEEEEcCCCceEEEEEECCCCce-----Eecc-CCCCCCCCeECCCC----CEEEEEEcc
Confidence            9864              555554432   3577788754321     1111 12246788999996    556554432


Q ss_pred             ------CeEEEEEeccCCcceeeeeeccCCCcEEEEEEcc
Q 022111          235 ------GTVVIWTCAKEGEQWEGRVLKDFKTPVWSVSWSL  268 (302)
Q Consensus       235 ------~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp  268 (302)
                            ..|.+.|+.....    ..+. ....+...+|||
T Consensus       398 ~~~~~~~~L~~~dl~g~~~----~~l~-~~~~~~~p~Wsp  432 (435)
T PRK05137        398 PGSGGAPKLYTVDLTGRNE----REVP-TPGDASDPAWSP  432 (435)
T ss_pred             CCCCCcceEEEEECCCCce----EEcc-CCCCccCcccCC
Confidence                  2455666543211    1222 123455667776

>PRK04922 tolB translocation protein TolB; Provisional

Probab=99.33  E-value=5.5e-10  Score=101.57  Aligned_cols=219  Identities=21%  Similarity=0.281  Sum_probs=127.7

Q ss_pred             cccccceeEEEEccCCCEEEEeeCC---CcEEEEeecCCCceEEEEecCcccCeEEEEeeCCCCCCEE-EEEeCCC--eE
Q 022111            8 TGHEDTVHDVAMDFYGKRLATASSD---SSIKIIGLSNSASQHLATLKGHRGPVWQVAWAHPKFGSIL-ASCSYDG--QV   81 (302)
Q Consensus         8 ~~h~~~v~~~~~s~~~~~l~s~~~d---~~v~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l-~s~s~D~--~i   81 (302)
                      ..|...+.+.+|+|||+.|+..+.+   ..|++|++..+....+.   .+.+.....+|+++  |+.| ++.+.++  .|
T Consensus       200 t~~~~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~~~l~---~~~g~~~~~~~SpD--G~~l~~~~s~~g~~~I  274 (433)
T PRK04922        200 LRSAEPILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQRELVA---SFRGINGAPSFSPD--GRRLALTLSRDGNPEI  274 (433)
T ss_pred             ecCCCccccccCCCCCCEEEEEecCCCCcEEEEEECCCCCEEEec---cCCCCccCceECCC--CCEEEEEEeCCCCceE
Confidence            3456678889999999999887744   36889998654433333   33344557889874  6655 4556665  58


Q ss_pred             EEEEcCCCCceeEEEEecCCCCCeeEEEecCCCCCcEEEEEec-CCcEEEEEecC-CCCeeeeeecccCCCCeEEEEeCC
Q 022111           82 IIWKEGNQNDWTQAHTFNDHKSSVNSIAWAPHELGLSLACGSS-DGNISVFTATA-DGGWDTTRIDQAHPVGVTSVSWAP  159 (302)
Q Consensus        82 ~iwd~~~~~~~~~~~~~~~h~~~i~~l~~~pd~~~~~l~sg~~-d~~v~~~~~~~-~~~~~~~~~~~~h~~~v~~~~~~~  159 (302)
                      .+||+.++.    ...+..+.......+|+||  |..|+..+. ++...+|.+.. ++...  .+. .+......+.|+|
T Consensus       275 y~~d~~~g~----~~~lt~~~~~~~~~~~spD--G~~l~f~sd~~g~~~iy~~dl~~g~~~--~lt-~~g~~~~~~~~Sp  345 (433)
T PRK04922        275 YVMDLGSRQ----LTRLTNHFGIDTEPTWAPD--GKSIYFTSDRGGRPQIYRVAASGGSAE--RLT-FQGNYNARASVSP  345 (433)
T ss_pred             EEEECCCCC----eEECccCCCCccceEECCC--CCEEEEEECCCCCceEEEEECCCCCeE--Eee-cCCCCccCEEECC
Confidence            888886642    3345555555678899998  566766653 45544554332 22222  111 1122234678888


Q ss_pred             CCCCCceeecccCCCceeEEEeeCC-C--cEEEEEEecCccccccccccccCCCceeEEEeeCCCCCCccEEEEEecC-C
Q 022111          160 AMAPGALVGLGLLDPVQKLASCGCD-N--TVKVWKMYNGIWKMDCFPALQMHSDWVRSVAWAPNLGLPKSTIASASQD-G  235 (302)
Q Consensus       160 ~~~~~~~~~~~~~~~~~~l~s~~~D-~--~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~l~s~s~D-~  235 (302)
                      ++              +.|+..+.+ +  .|.+||+.++...     .+. +.......+|+||+    ++|+..+.+ +
T Consensus       346 DG--------------~~Ia~~~~~~~~~~I~v~d~~~g~~~-----~Lt-~~~~~~~p~~spdG----~~i~~~s~~~g  401 (433)
T PRK04922        346 DG--------------KKIAMVHGSGGQYRIAVMDLSTGSVR-----TLT-PGSLDESPSFAPNG----SMVLYATREGG  401 (433)
T ss_pred             CC--------------CEEEEEECCCCceeEEEEECCCCCeE-----ECC-CCCCCCCceECCCC----CEEEEEEecCC
Confidence            64              555554332 2  5889998765321     122 22235567999996    666666553 3


Q ss_pred             --eEEEEEeccCCcceeeeeeccCCCcEEEEEEcc
Q 022111          236 --TVVIWTCAKEGEQWEGRVLKDFKTPVWSVSWSL  268 (302)
Q Consensus       236 --~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp  268 (302)
                        .|.+++....  .  ...+....+.+...+|||
T Consensus       402 ~~~L~~~~~~g~--~--~~~l~~~~g~~~~p~wsp  432 (433)
T PRK04922        402 RGVLAAVSTDGR--V--RQRLVSADGEVREPAWSP  432 (433)
T ss_pred             ceEEEEEECCCC--c--eEEcccCCCCCCCCccCC
Confidence              4666665432  1  122223344566777876

>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]

Probab=99.31  E-value=1.2e-10  Score=109.19  Aligned_cols=195  Identities=21%  Similarity=0.272  Sum_probs=139.6

Q ss_pred             ceeEEEEccCCCEEEEeeCCCcEEEEeecCCCceEEEEecCcccCeE--E---EEeeCCCCCCEEEEEeCCCeEEEEEcC
Q 022111           13 TVHDVAMDFYGKRLATASSDSSIKIIGLSNSASQHLATLKGHRGPVW--Q---VAWAHPKFGSILASCSYDGQVIIWKEG   87 (302)
Q Consensus        13 ~v~~~~~s~~~~~l~s~~~d~~v~lw~~~~~~~~~~~~~~~h~~~v~--~---v~~~~~~~~~~l~s~s~D~~i~iwd~~   87 (302)
                      .+....+....++++.+..+..+-+|+.....  ....+. |...+.  +   +.++.  +.-++++|+.-+.|.+|+..
T Consensus        89 wi~g~~l~~e~k~i~l~~~~ns~~i~d~~~~~--~~~~i~-~~er~~l~~~~~~g~s~--~~~~i~~gsv~~~iivW~~~  163 (967)
T KOG0974|consen   89 WIFGAKLFEENKKIALVTSRNSLLIRDSKNSS--VLSKIQ-SDERCTLYSSLIIGDSA--EELYIASGSVFGEIIVWKPH  163 (967)
T ss_pred             cccccchhhhcceEEEEEcCceEEEEecccCc--eehhcC-CCceEEEEeEEEEeccC--cEEEEEeccccccEEEEecc
Confidence            34445566667888888999999999975432  122221 221111  1   12222  13578999999999999986


Q ss_pred             CCCceeEEEEecCCCCCeeEEEecCCCCCcEEEEEecCCcEEEEEecCCCCeeeeeecccCCCCeEEEEeCCCCCCCcee
Q 022111           88 NQNDWTQAHTFNDHKSSVNSIAWAPHELGLSLACGSSDGNISVFTATADGGWDTTRIDQAHPVGVTSVSWAPAMAPGALV  167 (302)
Q Consensus        88 ~~~~~~~~~~~~~h~~~i~~l~~~pd~~~~~l~sg~~d~~v~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~  167 (302)
                      ..+  .+. .+.+|.+.|.++.|+-|  |.++++.|+|+++++|++.+.......-  -+|+..+..+.+.|        
T Consensus       164 ~dn--~p~-~l~GHeG~iF~i~~s~d--g~~i~s~SdDRsiRlW~i~s~~~~~~~~--fgHsaRvw~~~~~~--------  228 (967)
T KOG0974|consen  164 EDN--KPI-RLKGHEGSIFSIVTSLD--GRYIASVSDDRSIRLWPIDSREVLGCTG--FGHSARVWACCFLP--------  228 (967)
T ss_pred             ccC--Ccc-eecccCCceEEEEEccC--CcEEEEEecCcceeeeecccccccCccc--ccccceeEEEEecc--------
Confidence            332  122 67899999999999987  7799999999999999987543222122  36888888888876        


Q ss_pred             ecccCCCceeEEEeeCCCcEEEEEEecCccccccccccccCC-CceeEEEeeCCCCCCccEEEEEecCCeEEEEEecc
Q 022111          168 GLGLLDPVQKLASCGCDNTVKVWKMYNGIWKMDCFPALQMHS-DWVRSVAWAPNLGLPKSTIASASQDGTVVIWTCAK  244 (302)
Q Consensus       168 ~~~~~~~~~~l~s~~~D~~v~iwd~~~~~~~~~~~~~~~~h~-~~v~~v~~~p~~~~~~~~l~s~s~D~~i~iwd~~~  244 (302)
                              ..++|++.|.+.++|+.....     +..+.+|. ..|..++..++.    -.++|++.|+.+++|++..
T Consensus       229 --------n~i~t~gedctcrvW~~~~~~-----l~~y~~h~g~~iw~~~~~~~~----~~~vT~g~Ds~lk~~~l~~  289 (967)
T KOG0974|consen  229 --------NRIITVGEDCTCRVWGVNGTQ-----LEVYDEHSGKGIWKIAVPIGV----IIKVTGGNDSTLKLWDLNG  289 (967)
T ss_pred             --------ceeEEeccceEEEEEecccce-----ehhhhhhhhcceeEEEEcCCc----eEEEeeccCcchhhhhhhc
Confidence                    279999999999999876543     23566664 458899988874    6799999999999999754

>KOG3881 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.30  E-value=3e-10  Score=96.19  Aligned_cols=249  Identities=12%  Similarity=0.158  Sum_probs=166.0

Q ss_pred             ccceeEEEEccCC--CEEEEeeCCCcEEEEeecCCCceE----EEEecCcccCeEEEEeeCCCCCCEEEEEeCCCeEEEE
Q 022111           11 EDTVHDVAMDFYG--KRLATASSDSSIKIIGLSNSASQH----LATLKGHRGPVWQVAWAHPKFGSILASCSYDGQVIIW   84 (302)
Q Consensus        11 ~~~v~~~~~s~~~--~~l~s~~~d~~v~lw~~~~~~~~~----~~~~~~h~~~v~~v~~~~~~~~~~l~s~s~D~~i~iw   84 (302)
                      ...|..++|--++  +.|..++.|..+.++.++......    +.....-.++|..+...    ...|.+|-.+|.+.+|
T Consensus        55 ~~ris~l~~~~d~~tevl~~r~~~~~~~~~~~~E~~~~s~~~~~~~~~l~~~~I~gl~~~----dg~Litc~~sG~l~~~  130 (412)
T KOG3881|consen   55 LDRISSLLFGVDGETEVLNARSADDDLPKFVIEEFEISSSLDDAKTVSLGTKSIKGLKLA----DGTLITCVSSGNLQVR  130 (412)
T ss_pred             hhhhhhheeecCCceeEeeccccCcccccccccCCccccccccccccccccccccchhhc----CCEEEEEecCCcEEEE
Confidence            3466777776544  566666677777777765432211    12334456777777764    2367799999999999


Q ss_pred             EcCCCCc-eeEEEEecCCCCCeeEEEecCCCCCcEEEEEecC--CcEEEEEecCCCCeeeeeecc--------cCCCCeE
Q 022111           85 KEGNQND-WTQAHTFNDHKSSVNSIAWAPHELGLSLACGSSD--GNISVFTATADGGWDTTRIDQ--------AHPVGVT  153 (302)
Q Consensus        85 d~~~~~~-~~~~~~~~~h~~~i~~l~~~pd~~~~~l~sg~~d--~~v~~~~~~~~~~~~~~~~~~--------~h~~~v~  153 (302)
                      ....+.. ..++..+..+ ..+..+.-+|.. ..++|+|+..  +.+.+||+...  .+++....        .-+..++
T Consensus       131 ~~k~~d~hss~l~~la~g-~g~~~~r~~~~~-p~Iva~GGke~~n~lkiwdle~~--~qiw~aKNvpnD~L~LrVPvW~t  206 (412)
T KOG3881|consen  131 HDKSGDLHSSKLIKLATG-PGLYDVRQTDTD-PYIVATGGKENINELKIWDLEQS--KQIWSAKNVPNDRLGLRVPVWIT  206 (412)
T ss_pred             eccCCccccccceeeecC-CceeeeccCCCC-CceEecCchhcccceeeeecccc--eeeeeccCCCCccccceeeeeec
Confidence            8763320 1122223322 345555555543 3578889999  89999998754  22222110        0111233


Q ss_pred             EEEeCCCCCCCceeecccCCCceeEEEeeCCCcEEEEEEecCccccccccccccCCCceeEEEeeCCCCCCccEEEEEec
Q 022111          154 SVSWAPAMAPGALVGLGLLDPVQKLASCGCDNTVKVWKMYNGIWKMDCFPALQMHSDWVRSVAWAPNLGLPKSTIASASQ  233 (302)
Q Consensus       154 ~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~D~~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~l~s~s~  233 (302)
                      .+.|-|.            ++...||+|+.-+.+|+||.+....   .+..|.-.+.+|.++..-|.+    ++|.+|..
T Consensus       207 di~Fl~g------------~~~~~fat~T~~hqvR~YDt~~qRR---PV~~fd~~E~~is~~~l~p~g----n~Iy~gn~  267 (412)
T KOG3881|consen  207 DIRFLEG------------SPNYKFATITRYHQVRLYDTRHQRR---PVAQFDFLENPISSTGLTPSG----NFIYTGNT  267 (412)
T ss_pred             cceecCC------------CCCceEEEEecceeEEEecCcccCc---ceeEeccccCcceeeeecCCC----cEEEEecc
Confidence            3444332            1257899999999999999986542   334455567889999999985    88999999


Q ss_pred             CCeEEEEEeccCCcceeeeeeccCCCcEEEEEEccCCCEEEEecCC-ceEEeeecC
Q 022111          234 DGTVVIWTCAKEGEQWEGRVLKDFKTPVWSVSWSLTGNLLAVADAN-NVTLWKEAV  288 (302)
Q Consensus       234 D~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~la~~~~d-~i~~w~~~~  288 (302)
                      -+.+..||.+....  .+..+.+..+.|.++--+|.+.+||+++-| -+||+|...
T Consensus       268 ~g~l~~FD~r~~kl--~g~~~kg~tGsirsih~hp~~~~las~GLDRyvRIhD~kt  321 (412)
T KOG3881|consen  268 KGQLAKFDLRGGKL--LGCGLKGITGSIRSIHCHPTHPVLASCGLDRYVRIHDIKT  321 (412)
T ss_pred             cchhheecccCcee--eccccCCccCCcceEEEcCCCceEEeeccceeEEEeeccc
Confidence            99999999986431  223346777889999999999999999999 699999865

>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]

Probab=99.30  E-value=1.8e-10  Score=94.23  Aligned_cols=203  Identities=20%  Similarity=0.286  Sum_probs=136.8

Q ss_pred             EEEEccCCCEEEEeeCCCcEEEEeecCCCceEEEEecCcccCeEEEEeeCCCCCCEEEEEeCCCeEEEEEcCCCCceeEE
Q 022111           16 DVAMDFYGKRLATASSDSSIKIIGLSNSASQHLATLKGHRGPVWQVAWAHPKFGSILASCSYDGQVIIWKEGNQNDWTQA   95 (302)
Q Consensus        16 ~~~~s~~~~~l~s~~~d~~v~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~s~D~~i~iwd~~~~~~~~~~   95 (302)
                      ++.|++-+..++++-.+|.+.+-+......+.++..++|+-+++-..|+.. +++++.+||.|+.+.-||++-.+.+ ..
T Consensus       126 slD~~~~~~~i~vs~s~G~~~~v~~t~~~le~vq~wk~He~E~Wta~f~~~-~pnlvytGgDD~~l~~~D~R~p~~~-i~  203 (339)
T KOG0280|consen  126 SLDISTSGTKIFVSDSRGSISGVYETEMVLEKVQTWKVHEFEAWTAKFSDK-EPNLVYTGGDDGSLSCWDIRIPKTF-IW  203 (339)
T ss_pred             EEEeeccCceEEEEcCCCcEEEEecceeeeeecccccccceeeeeeecccC-CCceEEecCCCceEEEEEecCCcce-ee
Confidence            456777788888888888888555444334555678999999999999754 5789999999999999999844322 12


Q ss_pred             EEecCCCCCeeEEEecCCCCCcEEEEEecCCcEEEEEecCCCCeeeeeecccCCCCeEEEEeCCCCCCCceeecccCCCc
Q 022111           96 HTFNDHKSSVNSIAWAPHELGLSLACGSSDGNISVFTATADGGWDTTRIDQAHPVGVTSVSWAPAMAPGALVGLGLLDPV  175 (302)
Q Consensus        96 ~~~~~h~~~i~~l~~~pd~~~~~l~sg~~d~~v~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~  175 (302)
                      +..+-|..-|.++.-+|. .+.++++|+.|-.|++||.+..+. .+..  ..-...|..+.+.|...            .
T Consensus       204 ~n~kvH~~GV~SI~ss~~-~~~~I~TGsYDe~i~~~DtRnm~k-Pl~~--~~v~GGVWRi~~~p~~~------------~  267 (339)
T KOG0280|consen  204 HNSKVHTSGVVSIYSSPP-KPTYIATGSYDECIRVLDTRNMGK-PLFK--AKVGGGVWRIKHHPEIF------------H  267 (339)
T ss_pred             ecceeeecceEEEecCCC-CCceEEEeccccceeeeehhcccC-cccc--CccccceEEEEecchhh------------h
Confidence            224457777888877764 367999999999999999885432 1111  12346799999998642            2


Q ss_pred             eeEEEeeCCCcEEEEEEecCccccc-cccccccCCCceeEEEeeCCCCCCccEEEEEec-CCeEE-EEE
Q 022111          176 QKLASCGCDNTVKVWKMYNGIWKMD-CFPALQMHSDWVRSVAWAPNLGLPKSTIASASQ-DGTVV-IWT  241 (302)
Q Consensus       176 ~~l~s~~~D~~v~iwd~~~~~~~~~-~~~~~~~h~~~v~~v~~~p~~~~~~~~l~s~s~-D~~i~-iwd  241 (302)
                      ..|++|-..| ++|-++..+...+. .++..+.|.+-...-.|.-.    ...|||++. |+.|+ +|-
T Consensus       268 ~lL~~CMh~G-~ki~~~~~~~~e~~~~~~s~~~hdSl~YG~DWd~~----~~~lATCsFYDk~~~~~Wl  331 (339)
T KOG0280|consen  268 RLLAACMHNG-AKILDSSDKVLEFQIVLPSDKIHDSLCYGGDWDSK----DSFLATCSFYDKKIRQLWL  331 (339)
T ss_pred             HHHHHHHhcC-ceEEEecccccchheeeeccccccceeeccccccc----cceeeeeeccccceeeeee
Confidence            3455555544 67777665432211 23455678766666666221    256888774 77655 663

>KOG2139 consensus WD40 repeat protein [General function prediction only]

Probab=99.29  E-value=4.7e-10  Score=94.27  Aligned_cols=197  Identities=18%  Similarity=0.310  Sum_probs=128.0

Q ss_pred             CeEEEEeeCCCCCCEEEEEeCCCeEEEEEcCCCCceeEEEEec-CCCCCeeEEEecCCCCCcEEEEEecCCcEEEEEecC
Q 022111           57 PVWQVAWAHPKFGSILASCSYDGQVIIWKEGNQNDWTQAHTFN-DHKSSVNSIAWAPHELGLSLACGSSDGNISVFTATA  135 (302)
Q Consensus        57 ~v~~v~~~~~~~~~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~-~h~~~i~~l~~~pd~~~~~l~sg~~d~~v~~~~~~~  135 (302)
                      .+..++|.. + =..+|.+..|-.|++|+-++.    +...++ .-...|+|++|-|.. +..|+.|...+ |.+|....
T Consensus       100 dlr~~aWhq-H-~~~fava~nddvVriy~ksst----~pt~Lks~sQrnvtclawRPls-aselavgCr~g-IciW~~s~  171 (445)
T KOG2139|consen  100 DLRGVAWHQ-H-IIAFAVATNDDVVRIYDKSST----CPTKLKSVSQRNVTCLAWRPLS-ASELAVGCRAG-ICIWSDSR  171 (445)
T ss_pred             ceeeEeech-h-hhhhhhhccCcEEEEeccCCC----CCceecchhhcceeEEEeccCC-cceeeeeecce-eEEEEcCc
Confidence            456678843 2 234788899999999986542    111222 134679999999984 45677776654 66886643


Q ss_pred             CCCeee----------eeecccCCCCeEEEEeCCCCCCCceeecccCCCceeEEEeeC-CCcEEEEEEecCccccccccc
Q 022111          136 DGGWDT----------TRIDQAHPVGVTSVSWAPAMAPGALVGLGLLDPVQKLASCGC-DNTVKVWKMYNGIWKMDCFPA  204 (302)
Q Consensus       136 ~~~~~~----------~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~-D~~v~iwd~~~~~~~~~~~~~  204 (302)
                      ......          ..+.......|+++.|.+++              ..+++++. |..|.|||..++...  .+. 
T Consensus       172 tln~~r~~~~~s~~~~qvl~~pgh~pVtsmqwn~dg--------------t~l~tAS~gsssi~iWdpdtg~~~--pL~-  234 (445)
T KOG2139|consen  172 TLNANRNIRMMSTHHLQVLQDPGHNPVTSMQWNEDG--------------TILVTASFGSSSIMIWDPDTGQKI--PLI-  234 (445)
T ss_pred             ccccccccccccccchhheeCCCCceeeEEEEcCCC--------------CEEeecccCcceEEEEcCCCCCcc--ccc-
Confidence            221100          00111112579999999864              67888876 667999999877421  111 


Q ss_pred             cccCCCceeEEEeeCCCCCCccEEEEEecCCeEEEEEeccCCcceeeeeeccCCCcEEEEEEccCCCEEEEecCCceEEe
Q 022111          205 LQMHSDWVRSVAWAPNLGLPKSTIASASQDGTVVIWTCAKEGEQWEGRVLKDFKTPVWSVSWSLTGNLLAVADANNVTLW  284 (302)
Q Consensus       205 ~~~h~~~v~~v~~~p~~~~~~~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~la~~~~d~i~~w  284 (302)
                       --.-+.+.-+.||||+    ..|.+++-|+..++|+....   |..+--.-..+.|....|+|+|++|..+....=++|
T Consensus       235 -~~glgg~slLkwSPdg----d~lfaAt~davfrlw~e~q~---wt~erw~lgsgrvqtacWspcGsfLLf~~sgsp~ly  306 (445)
T KOG2139|consen  235 -PKGLGGFSLLKWSPDG----DVLFAATCDAVFRLWQENQS---WTKERWILGSGRVQTACWSPCGSFLLFACSGSPRLY  306 (445)
T ss_pred             -ccCCCceeeEEEcCCC----CEEEEecccceeeeehhccc---ceecceeccCCceeeeeecCCCCEEEEEEcCCceEE
Confidence             1234557789999996    77999999999999965432   221110112347899999999999988877766666


Q ss_pred             ee
Q 022111          285 KE  286 (302)
Q Consensus       285 ~~  286 (302)
                      ..
T Consensus       307 sl  308 (445)
T KOG2139|consen  307 SL  308 (445)
T ss_pred             EE
Confidence            54

>KOG2321 consensus WD40 repeat protein [General function prediction only]

Probab=99.25  E-value=1.7e-09  Score=95.91  Aligned_cols=256  Identities=14%  Similarity=0.172  Sum_probs=152.2

Q ss_pred             ccccceeEEEEccCCCEE-EEeeCCCcEEEEeecCCCceEE----------E----------------EecCcc------
Q 022111            9 GHEDTVHDVAMDFYGKRL-ATASSDSSIKIIGLSNSASQHL----------A----------------TLKGHR------   55 (302)
Q Consensus         9 ~h~~~v~~~~~s~~~~~l-~s~~~d~~v~lw~~~~~~~~~~----------~----------------~~~~h~------   55 (302)
                      +|....+.|..+|||+|+ |+|-+--.|++||+.+-..+.-          .                .+.-|.      
T Consensus        49 e~p~ast~ik~s~DGqY~lAtG~YKP~ikvydlanLSLKFERhlDae~V~feiLsDD~SK~v~L~~DR~IefHak~G~hy  128 (703)
T KOG2321|consen   49 EMPTASTRIKVSPDGQYLLATGTYKPQIKVYDLANLSLKFERHLDAEVVDFEILSDDYSKSVFLQNDRTIEFHAKYGRHY  128 (703)
T ss_pred             CCccccceeEecCCCcEEEEecccCCceEEEEcccceeeeeecccccceeEEEeccchhhheEeecCceeeehhhcCeee
Confidence            677888999999999866 4566788899999853221100          0                000010      


Q ss_pred             -----cCeEEEEeeCCCCCCEEEEEeCCCeEEEEEcCCCCceeEEEEecCCCCCeeEEEecCCCCCcEEEEEecCCcEEE
Q 022111           56 -----GPVWQVAWAHPKFGSILASCSYDGQVIIWKEGNQNDWTQAHTFNDHKSSVNSIAWAPHELGLSLACGSSDGNISV  130 (302)
Q Consensus        56 -----~~v~~v~~~~~~~~~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~h~~~i~~l~~~pd~~~~~l~sg~~d~~v~~  130 (302)
                           ..-+.++++.+. ..+++.|+.. .|--.+++.+.   -+..|....+.+++|..++.  ..+|++|+.+|.|..
T Consensus       129 ~~RIP~~GRDm~y~~~s-cDly~~gsg~-evYRlNLEqGr---fL~P~~~~~~~lN~v~in~~--hgLla~Gt~~g~VEf  201 (703)
T KOG2321|consen  129 RTRIPKFGRDMKYHKPS-CDLYLVGSGS-EVYRLNLEQGR---FLNPFETDSGELNVVSINEE--HGLLACGTEDGVVEF  201 (703)
T ss_pred             eeecCcCCccccccCCC-ccEEEeecCc-ceEEEEccccc---cccccccccccceeeeecCc--cceEEecccCceEEE
Confidence                 011223333221 2344333333 23333443331   22334445688999999987  347999999999999


Q ss_pred             EEecCCCCeeeeeec---ccCCC-----CeEEEEeCCCCCCCceeecccCCCceeEEEeeCCCcEEEEEEecCccccccc
Q 022111          131 FTATADGGWDTTRID---QAHPV-----GVTSVSWAPAMAPGALVGLGLLDPVQKLASCGCDNTVKVWKMYNGIWKMDCF  202 (302)
Q Consensus       131 ~~~~~~~~~~~~~~~---~~h~~-----~v~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~D~~v~iwd~~~~~~~~~~~  202 (302)
                      ||.+...........   ..|+.     .|+++.|+-+              +-.++.|+.+|.+.|||++....   .+
T Consensus       202 wDpR~ksrv~~l~~~~~v~s~pg~~~~~svTal~F~d~--------------gL~~aVGts~G~v~iyDLRa~~p---l~  264 (703)
T KOG2321|consen  202 WDPRDKSRVGTLDAASSVNSHPGGDAAPSVTALKFRDD--------------GLHVAVGTSTGSVLIYDLRASKP---LL  264 (703)
T ss_pred             ecchhhhhheeeecccccCCCccccccCcceEEEecCC--------------ceeEEeeccCCcEEEEEcccCCc---ee
Confidence            998754322211111   12333     3777777643              56799999999999999987531   11


Q ss_pred             cccccCCCceeEEEeeCCCCCCccEEEEEecCCeEEEEEeccCCcceeeeeeccCCCcEEEEEEccCCCEEEEecCC-ce
Q 022111          203 PALQMHSDWVRSVAWAPNLGLPKSTIASASQDGTVVIWTCAKEGEQWEGRVLKDFKTPVWSVSWSLTGNLLAVADAN-NV  281 (302)
Q Consensus       203 ~~~~~h~~~v~~v~~~p~~~~~~~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~la~~~~d-~i  281 (302)
                      ..-.+..-+|..+.|.+...  .+.|+| .+.+.++|||-.....    -...+....+..+++=|++-++.+|-.+ .+
T Consensus       265 ~kdh~~e~pi~~l~~~~~~~--q~~v~S-~Dk~~~kiWd~~~Gk~----~asiEpt~~lND~C~~p~sGm~f~Ane~~~m  337 (703)
T KOG2321|consen  265 VKDHGYELPIKKLDWQDTDQ--QNKVVS-MDKRILKIWDECTGKP----MASIEPTSDLNDFCFVPGSGMFFTANESSKM  337 (703)
T ss_pred             ecccCCccceeeecccccCC--CceEEe-cchHHhhhcccccCCc----eeeccccCCcCceeeecCCceEEEecCCCcc
Confidence            11123456799999987631  234443 3456799999654321    1223455668888888988888888666 56


Q ss_pred             EEeeecCCce---EEEe
Q 022111          282 TLWKEAVDGE---WQQV  295 (302)
Q Consensus       282 ~~w~~~~~~~---~~~~  295 (302)
                      ..|-+..-|+   |+.+
T Consensus       338 ~~yyiP~LGPaPrWCSf  354 (703)
T KOG2321|consen  338 HTYYIPSLGPAPRWCSF  354 (703)
T ss_pred             eeEEccccCCCchhhhH
Confidence            5555544333   6653

>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=99.25  E-value=1.7e-11  Score=105.79  Aligned_cols=230  Identities=17%  Similarity=0.210  Sum_probs=158.7

Q ss_pred             ccceeEEEEccCCCEEEEeeCCCcEEEEeecCCCceEEEEecCcccCeEEEEeeCCCCCCEEEEEeCCCeEEEEEcCCCC
Q 022111           11 EDTVHDVAMDFYGKRLATASSDSSIKIIGLSNSASQHLATLKGHRGPVWQVAWAHPKFGSILASCSYDGQVIIWKEGNQN   90 (302)
Q Consensus        11 ~~~v~~~~~s~~~~~l~s~~~d~~v~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~s~D~~i~iwd~~~~~   90 (302)
                      ...|.++.|--+.+++|.+ +-+.+++||-..   ..+.-++.|. .|..+.|-|-  --+|++++..|.++.-|+..+.
T Consensus       170 ~Etv~Dv~~LHneq~~AVA-QK~y~yvYD~~G---tElHClk~~~-~v~rLeFLPy--HfLL~~~~~~G~L~Y~DVS~Gk  242 (545)
T KOG1272|consen  170 METVRDVTFLHNEQFFAVA-QKKYVYVYDNNG---TELHCLKRHI-RVARLEFLPY--HFLLVAASEAGFLKYQDVSTGK  242 (545)
T ss_pred             hhhhhhhhhhcchHHHHhh-hhceEEEecCCC---cEEeehhhcC-chhhhcccch--hheeeecccCCceEEEeechhh
Confidence            3456777776666677655 677899998643   3344455554 5888999764  3578999999999999997763


Q ss_pred             ceeEEEEecCCCCCeeEEEecCCCCCcEEEEEecCCcEEEEEecCCCCeeeeeecccCCCCeEEEEeCCCCCCCceeecc
Q 022111           91 DWTQAHTFNDHKSSVNSIAWAPHELGLSLACGSSDGNISVFTATADGGWDTTRIDQAHPVGVTSVSWAPAMAPGALVGLG  170 (302)
Q Consensus        91 ~~~~~~~~~~h~~~i~~l~~~pd~~~~~l~sg~~d~~v~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~  170 (302)
                         .+..+..-.+.+..+.-+|-  ...+-+|...|+|.+|.-...  -.+..+. .|..+|++++..+.          
T Consensus       243 ---lVa~~~t~~G~~~vm~qNP~--NaVih~GhsnGtVSlWSP~sk--ePLvKiL-cH~g~V~siAv~~~----------  304 (545)
T KOG1272|consen  243 ---LVASIRTGAGRTDVMKQNPY--NAVIHLGHSNGTVSLWSPNSK--EPLVKIL-CHRGPVSSIAVDRG----------  304 (545)
T ss_pred             ---hhHHHHccCCccchhhcCCc--cceEEEcCCCceEEecCCCCc--chHHHHH-hcCCCcceEEECCC----------
Confidence               55666667788888888886  347889999999999965432  2233333 79999999999876          


Q ss_pred             cCCCceeEEEeeCCCcEEEEEEecCccccccccccccCCCceeEEEeeCCCCCCccEEEEEecCCeEEEEEeccC--Ccc
Q 022111          171 LLDPVQKLASCGCDNTVKVWKMYNGIWKMDCFPALQMHSDWVRSVAWAPNLGLPKSTIASASQDGTVVIWTCAKE--GEQ  248 (302)
Q Consensus       171 ~~~~~~~l~s~~~D~~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~l~s~s~D~~i~iwd~~~~--~~~  248 (302)
                          |.++||.|.|+.++|||++...    .+.++.. .-+...+++|-.+      +++.|..-.+.||.-...  ...
T Consensus       305 ----G~YMaTtG~Dr~~kIWDlR~~~----ql~t~~t-p~~a~~ls~Sqkg------lLA~~~G~~v~iw~d~~~~s~~~  369 (545)
T KOG1272|consen  305 ----GRYMATTGLDRKVKIWDLRNFY----QLHTYRT-PHPASNLSLSQKG------LLALSYGDHVQIWKDALKGSGHG  369 (545)
T ss_pred             ----CcEEeecccccceeEeeecccc----ccceeec-CCCcccccccccc------ceeeecCCeeeeehhhhcCCCCC
Confidence                4899999999999999998643    1222211 2345667777543      677778888999963221  111


Q ss_pred             eeeeeeccCCCcEEEEEEccCCCEEEEecCCc
Q 022111          249 WEGRVLKDFKTPVWSVSWSLTGNLLAVADANN  280 (302)
Q Consensus       249 ~~~~~~~~~~~~v~~~~~spdg~~la~~~~d~  280 (302)
                      ...-+......+|..+.|.|=.++|.+|...+
T Consensus       370 ~~pYm~H~~~~~V~~l~FcP~EDvLGIGH~~G  401 (545)
T KOG1272|consen  370 ETPYMNHRCGGPVEDLRFCPYEDVLGIGHAGG  401 (545)
T ss_pred             CcchhhhccCcccccceeccHHHeeeccccCC
Confidence            11112223345899999999777777775543

>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]

Probab=99.24  E-value=1.1e-09  Score=89.68  Aligned_cols=229  Identities=15%  Similarity=0.211  Sum_probs=140.1

Q ss_pred             CCcEEEEeecCCCceEEE--EecCcccCeEEEEeeC-CCCCC-EEEEEeCCCeEEEEEcCCCCceeEEEEecCCCC---C
Q 022111           32 DSSIKIIGLSNSASQHLA--TLKGHRGPVWQVAWAH-PKFGS-ILASCSYDGQVIIWKEGNQNDWTQAHTFNDHKS---S  104 (302)
Q Consensus        32 d~~v~lw~~~~~~~~~~~--~~~~h~~~v~~v~~~~-~~~~~-~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~h~~---~  104 (302)
                      -|.+.+|++......+..  +...|+ .+..+.|.. +.+|. .++-+-.+|.|.++..........+..+..-.-   .
T Consensus        45 ~Gkl~Lys~~d~~~~~l~~~q~~dts-~~~dm~w~~~~~~g~~~l~~a~a~G~i~~~r~~~~~ss~~L~~ls~~ki~~~~  123 (339)
T KOG0280|consen   45 SGKLHLYSLEDMKLSPLDTLQCTDTS-TEFDMLWRIRETDGDFNLLDAHARGQIQLYRNDEDESSVHLRGLSSKKISVVE  123 (339)
T ss_pred             ccceEEEeecccccCccceeeeeccc-ccceeeeeeccCCccceeeeccccceEEEEeeccceeeeeecccchhhhhhee
Confidence            356788887543222221  223444 466777754 23455 566677889999997543211111111111111   2


Q ss_pred             eeEEEecCCCCCcEEEEEecCCcEEEEEecCCCCeeeeeecccCCCCeEEEEeCCCCCCCceeecccCCCceeEEEeeCC
Q 022111          105 VNSIAWAPHELGLSLACGSSDGNISVFTATADGGWDTTRIDQAHPVGVTSVSWAPAMAPGALVGLGLLDPVQKLASCGCD  184 (302)
Q Consensus       105 i~~l~~~pd~~~~~l~sg~~d~~v~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~D  184 (302)
                      --++.|++-  +..++++..+|.+..-+.. .......+.-+.|..+.....|+...             ...+.+||.|
T Consensus       124 ~lslD~~~~--~~~i~vs~s~G~~~~v~~t-~~~le~vq~wk~He~E~Wta~f~~~~-------------pnlvytGgDD  187 (339)
T KOG0280|consen  124 ALSLDISTS--GTKIFVSDSRGSISGVYET-EMVLEKVQTWKVHEFEAWTAKFSDKE-------------PNLVYTGGDD  187 (339)
T ss_pred             eeEEEeecc--CceEEEEcCCCcEEEEecc-eeeeeecccccccceeeeeeecccCC-------------CceEEecCCC
Confidence            346677765  5678888888888843322 11122222224777777777776532             2689999999


Q ss_pred             CcEEEEEEecCccccccc-cccccCCCceeEEEeeCCCCCCccEEEEEecCCeEEEEEeccCCcceeeeeeccCCCcEEE
Q 022111          185 NTVKVWKMYNGIWKMDCF-PALQMHSDWVRSVAWAPNLGLPKSTIASASQDGTVVIWTCAKEGEQWEGRVLKDFKTPVWS  263 (302)
Q Consensus       185 ~~v~iwd~~~~~~~~~~~-~~~~~h~~~v~~v~~~p~~~~~~~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~~~~~v~~  263 (302)
                      +.+..||++-+.   .++ +..+-|...|.||.-+|..   +..|++|+.|-.|++||.|..+++.   ......+.||.
T Consensus       188 ~~l~~~D~R~p~---~~i~~n~kvH~~GV~SI~ss~~~---~~~I~TGsYDe~i~~~DtRnm~kPl---~~~~v~GGVWR  258 (339)
T KOG0280|consen  188 GSLSCWDIRIPK---TFIWHNSKVHTSGVVSIYSSPPK---PTYIATGSYDECIRVLDTRNMGKPL---FKAKVGGGVWR  258 (339)
T ss_pred             ceEEEEEecCCc---ceeeecceeeecceEEEecCCCC---CceEEEeccccceeeeehhcccCcc---ccCccccceEE
Confidence            999999999432   122 2245688999999998863   6899999999999999998654331   22234578999


Q ss_pred             EEEccC--CCEEEEecCCceEEeee
Q 022111          264 VSWSLT--GNLLAVADANNVTLWKE  286 (302)
Q Consensus       264 ~~~spd--g~~la~~~~d~i~~w~~  286 (302)
                      +.++|.  +++|++.=.++.+|-+.
T Consensus       259 i~~~p~~~~~lL~~CMh~G~ki~~~  283 (339)
T KOG0280|consen  259 IKHHPEIFHRLLAACMHNGAKILDS  283 (339)
T ss_pred             EEecchhhhHHHHHHHhcCceEEEe
Confidence            999984  33444443445666655

>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]

Probab=99.23  E-value=7.4e-09  Score=86.23  Aligned_cols=255  Identities=17%  Similarity=0.267  Sum_probs=144.8

Q ss_pred             eeEEEEccCCC-EEEEeeCCCcEEEEeecCCCceEEEEecCcccCeEEEEeeCCCCC-CEEEEEeCCCeEEEEEcCCCCc
Q 022111           14 VHDVAMDFYGK-RLATASSDSSIKIIGLSNSASQHLATLKGHRGPVWQVAWAHPKFG-SILASCSYDGQVIIWKEGNQND   91 (302)
Q Consensus        14 v~~~~~s~~~~-~l~s~~~d~~v~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~-~~l~s~s~D~~i~iwd~~~~~~   91 (302)
                      |.-+-|..|.- .|.....|+.|.+|++..+.  -..++....+.+..++|+|+  | .+|.+..-|-.|.+|.+.+.. 
T Consensus        51 i~yieW~ads~~ilC~~yk~~~vqvwsl~Qpe--w~ckIdeg~agls~~~WSPd--grhiL~tseF~lriTVWSL~t~~-  125 (447)
T KOG4497|consen   51 IVYIEWKADSCHILCVAYKDPKVQVWSLVQPE--WYCKIDEGQAGLSSISWSPD--GRHILLTSEFDLRITVWSLNTQK-  125 (447)
T ss_pred             hhheeeeccceeeeeeeeccceEEEEEeecce--eEEEeccCCCcceeeeECCC--cceEeeeecceeEEEEEEeccce-
Confidence            33456777764 45566788899999997643  33456666788999999975  6 567787889999999987642 


Q ss_pred             eeEEEEecCCCCCeeEEEecCCCCCcEEEEEecCCcEEEEEecCCCCeeee-eecccCCCCeEEEEeCCCCCCCcee---
Q 022111           92 WTQAHTFNDHKSSVNSIAWAPHELGLSLACGSSDGNISVFTATADGGWDTT-RIDQAHPVGVTSVSWAPAMAPGALV---  167 (302)
Q Consensus        92 ~~~~~~~~~h~~~i~~l~~~pd~~~~~l~sg~~d~~v~~~~~~~~~~~~~~-~~~~~h~~~v~~~~~~~~~~~~~~~---  167 (302)
                         ..-+...+..+..++|+||  |+..+.++.-.-...+.+..-..|.+. .+. -.+...+.+.|+|++.--.++   
T Consensus       126 ---~~~~~~pK~~~kg~~f~~d--g~f~ai~sRrDCkdyv~i~~c~~W~ll~~f~-~dT~DltgieWsPdg~~laVwd~~  199 (447)
T KOG4497|consen  126 ---GYLLPHPKTNVKGYAFHPD--GQFCAILSRRDCKDYVQISSCKAWILLKEFK-LDTIDLTGIEWSPDGNWLAVWDNV  199 (447)
T ss_pred             ---eEEecccccCceeEEECCC--CceeeeeecccHHHHHHHHhhHHHHHHHhcC-CCcccccCceECCCCcEEEEecch
Confidence               2223333455688899988  665555442211001111000011110 000 112234455566654211110   


Q ss_pred             ----------ecc-----cCCCceeEEEeeCCCcEEEEEEec-----C----------c-----cc--------ccc---
Q 022111          168 ----------GLG-----LLDPVQKLASCGCDNTVKVWKMYN-----G----------I-----WK--------MDC---  201 (302)
Q Consensus       168 ----------~~~-----~~~~~~~l~s~~~D~~v~iwd~~~-----~----------~-----~~--------~~~---  201 (302)
                                +++     -.+-+++|+.|+.|+++||.+--+     .          .     .+        ..|   
T Consensus       200 Leykv~aYe~~lG~k~v~wsP~~qflavGsyD~~lrvlnh~tWk~f~eflhl~s~~dp~~~~~~ke~~~~~ql~~~cLsf  279 (447)
T KOG4497|consen  200 LEYKVYAYERGLGLKFVEWSPCNQFLAVGSYDQMLRVLNHFTWKPFGEFLHLCSYHDPTLHLLEKETFSIVQLLHHCLSF  279 (447)
T ss_pred             hhheeeeeeeccceeEEEeccccceEEeeccchhhhhhceeeeeehhhhccchhccCchhhhhhhhhcchhhhccccccc
Confidence                      000     112268999999999999865311     0          0     00        000   


Q ss_pred             -------------------------ccccc------cCCCceeEEEeeCCCCCCccEEEEEec--CCeEEEEEeccCCcc
Q 022111          202 -------------------------FPALQ------MHSDWVRSVAWAPNLGLPKSTIASASQ--DGTVVIWTCAKEGEQ  248 (302)
Q Consensus       202 -------------------------~~~~~------~h~~~v~~v~~~p~~~~~~~~l~s~s~--D~~i~iwd~~~~~~~  248 (302)
                                               ++.++      .-...+.-++||+|.    .+++|-.+  -..+-+||++..+- 
T Consensus       280 ~p~~~~a~~~~~se~~YE~~~~pv~~~~lkp~tD~pnPk~g~g~lafs~Ds----~y~aTrnd~~PnalW~Wdlq~l~l-  354 (447)
T KOG4497|consen  280 TPTDLEAHIWEESETIYEQQMTPVKVHKLKPPTDFPNPKCGAGKLAFSCDS----TYAATRNDKYPNALWLWDLQNLKL-  354 (447)
T ss_pred             CCCccccCccccchhhhhhhhcceeeecccCCCCCCCcccccceeeecCCc----eEEeeecCCCCceEEEEechhhhh-
Confidence                                     00111      112246789999984    56666643  34688999875321 


Q ss_pred             eeeeeeccCCCcEEEEEEccCCCEEEEecCC-ceEEeeec
Q 022111          249 WEGRVLKDFKTPVWSVSWSLTGNLLAVADAN-NVTLWKEA  287 (302)
Q Consensus       249 ~~~~~~~~~~~~v~~~~~spdg~~la~~~~d-~i~~w~~~  287 (302)
                        ..+ .....+|....|.|....|++.... .+.+|..+
T Consensus       355 --~av-LiQk~piraf~WdP~~prL~vctg~srLY~W~ps  391 (447)
T KOG4497|consen  355 --HAV-LIQKHPIRAFEWDPGRPRLVVCTGKSRLYFWAPS  391 (447)
T ss_pred             --hhh-hhhccceeEEEeCCCCceEEEEcCCceEEEEcCC
Confidence              111 2335689999999988777666555 79999753

>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]

Probab=99.22  E-value=4.1e-10  Score=92.98  Aligned_cols=253  Identities=17%  Similarity=0.265  Sum_probs=157.0

Q ss_pred             ccceeEEEEccCCCEEEEeeCCCcEEEEeecCCC---ceEEEEecCcc------------cCeEEEEeeCCCCCCEEEEE
Q 022111           11 EDTVHDVAMDFYGKRLATASSDSSIKIIGLSNSA---SQHLATLKGHR------------GPVWQVAWAHPKFGSILASC   75 (302)
Q Consensus        11 ~~~v~~~~~s~~~~~l~s~~~d~~v~lw~~~~~~---~~~~~~~~~h~------------~~v~~v~~~~~~~~~~l~s~   75 (302)
                      .+.|+++-|...|.+|++|...|.|.+|..+...   .+....+++|+            ..|..|.|..+..-..+.-.
T Consensus        26 ad~ItaVefd~tg~YlatGDkgGRVvlfer~~s~~ceykf~teFQshe~EFDYLkSleieEKin~I~w~~~t~r~hFLls  105 (460)
T COG5170          26 ADKITAVEFDETGLYLATGDKGGRVVLFEREKSYGCEYKFFTEFQSHELEFDYLKSLEIEEKINAIEWFDDTGRNHFLLS  105 (460)
T ss_pred             cceeeEEEeccccceEeecCCCceEEEeecccccccchhhhhhhcccccchhhhhhccHHHHhhheeeecCCCcceEEEe
Confidence            4578899999999999999999999999764322   12223355553            45677888765432345555


Q ss_pred             eCCCeEEEEEcCCCC-------------------c--------------------eeEEEEe-cCCCCCeeEEEecCCCC
Q 022111           76 SYDGQVIIWKEGNQN-------------------D--------------------WTQAHTF-NDHKSSVNSIAWAPHEL  115 (302)
Q Consensus        76 s~D~~i~iwd~~~~~-------------------~--------------------~~~~~~~-~~h~~~i~~l~~~pd~~  115 (302)
                      ..|++|++|.+...+                   +                    ..+...+ ..|.--|+++.|+.|. 
T Consensus       106 tNdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~p~rvyaNaH~yhiNSiS~NsD~-  184 (460)
T COG5170         106 TNDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAKPCRVYANAHPYHINSISFNSDK-  184 (460)
T ss_pred             cCCceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccccccceEEEeccceeccccceeEeeeeeecCch-
Confidence            789999999875421                   0                    0011112 4577778899998873 


Q ss_pred             CcEEEEEecCCcEEEEEecC-CCCeeeeeecccCCC-----CeEEEEeCCCCCCCceeecccCCCceeEEEeeCCCcEEE
Q 022111          116 GLSLACGSSDGNISVFTATA-DGGWDTTRIDQAHPV-----GVTSVSWAPAMAPGALVGLGLLDPVQKLASCGCDNTVKV  189 (302)
Q Consensus       116 ~~~l~sg~~d~~v~~~~~~~-~~~~~~~~~~~~h~~-----~v~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~D~~v~i  189 (302)
                       ..+++ ++|-.|.+|.+.. ++.+.+..+. .|..     -|++..|+|.+             ...+.-.+..|+|++
T Consensus       185 -et~lS-aDdLrINLWnl~i~D~sFnIVDiK-P~nmeeLteVItSaeFhp~~-------------cn~fmYSsSkG~Ikl  248 (460)
T COG5170         185 -ETLLS-ADDLRINLWNLEIIDGSFNIVDIK-PHNMEELTEVITSAEFHPEM-------------CNVFMYSSSKGEIKL  248 (460)
T ss_pred             -heeee-ccceeeeeccccccCCceEEEecc-CccHHHHHHHHhhcccCHhH-------------cceEEEecCCCcEEe
Confidence             34554 5688999998763 4455555543 4433     47788888865             345666777899999


Q ss_pred             EEEecCc-----ccc-cc------ccccccCCCceeEEEeeCCCCCCccEEEEEecCCeEEEEEeccCCcceeee-eec-
Q 022111          190 WKMYNGI-----WKM-DC------FPALQMHSDWVRSVAWAPNLGLPKSTIASASQDGTVVIWTCAKEGEQWEGR-VLK-  255 (302)
Q Consensus       190 wd~~~~~-----~~~-~~------~~~~~~h~~~v~~v~~~p~~~~~~~~l~s~s~D~~i~iwd~~~~~~~~~~~-~~~-  255 (302)
                      -|++...     .+. ..      ..-+.+-...|.++.|+|++    ++|++-+. -+++|||++..+.+.... ++. 
T Consensus       249 ~DlRq~alcdn~~klfe~~~D~v~~~ff~eivsSISD~kFs~ng----ryIlsRdy-ltvkiwDvnm~k~pikTi~~h~~  323 (460)
T COG5170         249 NDLRQSALCDNSKKLFELTIDGVDVDFFEEIVSSISDFKFSDNG----RYILSRDY-LTVKIWDVNMAKNPIKTIPMHCD  323 (460)
T ss_pred             hhhhhhhhccCchhhhhhccCcccchhHHHHhhhhcceEEcCCC----cEEEEecc-ceEEEEecccccCCceeechHHH
Confidence            9998431     110 00      00112223468899999985    67777654 479999998765432211 110 


Q ss_pred             -------cC-CCcE---EEEEEccCCCEEEEecCC-ceEEee
Q 022111          256 -------DF-KTPV---WSVSWSLTGNLLAVADAN-NVTLWK  285 (302)
Q Consensus       256 -------~~-~~~v---~~~~~spdg~~la~~~~d-~i~~w~  285 (302)
                             -+ ...|   ..+.||-|.+.+.+|+=. +--++.
T Consensus       324 l~~~l~d~YEnDaifdkFeisfSgd~~~v~sgsy~NNfgiyp  365 (460)
T COG5170         324 LMDELNDVYENDAIFDKFEISFSGDDKHVLSGSYSNNFGIYP  365 (460)
T ss_pred             HHHHHHhhhhccceeeeEEEEecCCcccccccccccceeeec
Confidence                   01 1223   357888877777777543 444554

>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]

Probab=99.21  E-value=4.2e-09  Score=100.71  Aligned_cols=220  Identities=19%  Similarity=0.233  Sum_probs=139.8

Q ss_pred             ceEEEEecCcccCeEEEEeeCCCCCCEEEEEeCCCeEEEEEcCCC----CceeEEEEecCCCCCeeEEEecCCCCCcEEE
Q 022111           45 SQHLATLKGHRGPVWQVAWAHPKFGSILASCSYDGQVIIWKEGNQ----NDWTQAHTFNDHKSSVNSIAWAPHELGLSLA  120 (302)
Q Consensus        45 ~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~s~D~~i~iwd~~~~----~~~~~~~~~~~h~~~i~~l~~~pd~~~~~l~  120 (302)
                      +..+..+..|+..|..++.+++ .+.+++|||.||+||+|+.+..    .......++..-..++.++..++.  +..+|
T Consensus      1038 G~lVAhL~Ehs~~v~k~a~s~~-~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~~~~--~~~~A 1114 (1431)
T KOG1240|consen 1038 GILVAHLHEHSSAVIKLAVSSE-HTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVTMCGN--GDQFA 1114 (1431)
T ss_pred             ceEeehhhhccccccceeecCC-CCceEEEecCCceEEEeeehhhhcCcceeeeeEEEeccCCceEEEEeccC--CCeEE
Confidence            4567788899999999998876 3689999999999999997532    112233344434678888888876  67899


Q ss_pred             EEecCCcEEEEEecCCC--Ceeee--eecccCC-CCeEEEEeCCCCCCCceeecccCCCceeEEEeeCCCcEEEEEEecC
Q 022111          121 CGSSDGNISVFTATADG--GWDTT--RIDQAHP-VGVTSVSWAPAMAPGALVGLGLLDPVQKLASCGCDNTVKVWKMYNG  195 (302)
Q Consensus       121 sg~~d~~v~~~~~~~~~--~~~~~--~~~~~h~-~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~D~~v~iwd~~~~  195 (302)
                      .++.||.|.+.++....  .....  .....+. ..+.++.-.           .....+..|+.+..-+.|..||++..
T Consensus      1115 v~t~DG~v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~-----------~~~~~S~~lvy~T~~~~iv~~D~r~~ 1183 (1431)
T KOG1240|consen 1115 VSTKDGSVRVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAF-----------TAIVQSHVLVYATDLSRIVSWDTRMR 1183 (1431)
T ss_pred             EEcCCCeEEEEEccccccccceeeeeecccccCCCceEEeecc-----------cccccceeEEEEEeccceEEecchhh
Confidence            99999999998876411  00000  0000111 112221100           01111236777888888999998754


Q ss_pred             c--cccccccccccCCCceeEEEeeCCCCCCccEEEEEecCCeEEEEEeccCCcceeeeeeccCCCcEEEEEEc---cCC
Q 022111          196 I--WKMDCFPALQMHSDWVRSVAWAPNLGLPKSTIASASQDGTVVIWTCAKEGEQWEGRVLKDFKTPVWSVSWS---LTG  270 (302)
Q Consensus       196 ~--~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~s---pdg  270 (302)
                      .  |..    ......+.|++++.+|-+    +.++.|+.-|.+-+||+|-....  .........++.-+...   |..
T Consensus      1184 ~~~w~l----k~~~~hG~vTSi~idp~~----~WlviGts~G~l~lWDLRF~~~i--~sw~~P~~~~i~~v~~~~~~~~~ 1253 (1431)
T KOG1240|consen 1184 HDAWRL----KNQLRHGLVTSIVIDPWC----NWLVIGTSRGQLVLWDLRFRVPI--LSWEHPARAPIRHVWLCPTYPQE 1253 (1431)
T ss_pred             hhHHhh----hcCccccceeEEEecCCc----eEEEEecCCceEEEEEeecCcee--ecccCcccCCcceEEeeccCCCC
Confidence            2  221    122345779999999975    78999999999999999854211  11112233455555544   444


Q ss_pred             CEEEEecC--C-ceEEeeecC
Q 022111          271 NLLAVADA--N-NVTLWKEAV  288 (302)
Q Consensus       271 ~~la~~~~--d-~i~~w~~~~  288 (302)
                      ...++++.  + -|.+|++..
T Consensus      1254 S~~vs~~~~~~nevs~wn~~~ 1274 (1431)
T KOG1240|consen 1254 SVSVSAGSSSNNEVSTWNMET 1274 (1431)
T ss_pred             ceEEEecccCCCceeeeeccc
Confidence            56666655  3 599999854

>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB

Probab=99.20  E-value=1.7e-08  Score=91.36  Aligned_cols=203  Identities=22%  Similarity=0.319  Sum_probs=119.6

Q ss_pred             cEEEEeecCCCceEEEEecCcccCeEEEEeeCCCCCCEEEEEeCC---CeEEEEEcCCCCceeEEEEecCCCCCeeEEEe
Q 022111           34 SIKIIGLSNSASQHLATLKGHRGPVWQVAWAHPKFGSILASCSYD---GQVIIWKEGNQNDWTQAHTFNDHKSSVNSIAW  110 (302)
Q Consensus        34 ~v~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~s~D---~~i~iwd~~~~~~~~~~~~~~~h~~~i~~l~~  110 (302)
                      .|.++|.....   ...+..+...+...+|+++  |++|+.++.+   ..|.+||+.++..    ..+..+...+.+++|
T Consensus       171 ~l~~~d~~g~~---~~~l~~~~~~~~~p~~Spd--g~~la~~~~~~~~~~i~v~d~~~g~~----~~~~~~~~~~~~~~~  241 (417)
T TIGR02800       171 ELQVADYDGAN---PQTITRSREPILSPAWSPD--GQKLAYVSFESGKPEIYVQDLATGQR----EKVASFPGMNGAPAF  241 (417)
T ss_pred             eEEEEcCCCCC---CEEeecCCCceecccCCCC--CCEEEEEEcCCCCcEEEEEECCCCCE----EEeecCCCCccceEE
Confidence            46666664322   2344456667888999864  7888877643   4799999876532    223335566778899


Q ss_pred             cCCCCCcEEE-EEecCC--cEEEEEecCCCCeeeeeecccCCCCeEEEEeCCCCCCCceeecccCCCceeEEEee-CCC-
Q 022111          111 APHELGLSLA-CGSSDG--NISVFTATADGGWDTTRIDQAHPVGVTSVSWAPAMAPGALVGLGLLDPVQKLASCG-CDN-  185 (302)
Q Consensus       111 ~pd~~~~~l~-sg~~d~--~v~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~-~D~-  185 (302)
                      +||  +..|+ +.+.++  .|.+|++.....   ..+. .+........|+|++              +.|+.++ .++ 
T Consensus       242 spD--g~~l~~~~~~~~~~~i~~~d~~~~~~---~~l~-~~~~~~~~~~~s~dg--------------~~l~~~s~~~g~  301 (417)
T TIGR02800       242 SPD--GSKLAVSLSKDGNPDIYVMDLDGKQL---TRLT-NGPGIDTEPSWSPDG--------------KSIAFTSDRGGS  301 (417)
T ss_pred             CCC--CCEEEEEECCCCCccEEEEECCCCCE---EECC-CCCCCCCCEEECCCC--------------CEEEEEECCCCC
Confidence            998  54454 445554  466667653321   2221 233334456788753              5555443 333 


Q ss_pred             -cEEEEEEecCccccccccccccCCCceeEEEeeCCCCCCccEEEEEecCC---eEEEEEeccCCcceeeeeeccCCCcE
Q 022111          186 -TVKVWKMYNGIWKMDCFPALQMHSDWVRSVAWAPNLGLPKSTIASASQDG---TVVIWTCAKEGEQWEGRVLKDFKTPV  261 (302)
Q Consensus       186 -~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~l~s~s~D~---~i~iwd~~~~~~~~~~~~~~~~~~~v  261 (302)
                       .|+++|+.++..     ..+..+...+....|+|++    +.|+..+.++   .|.+||+....  .  ..+... ...
T Consensus       302 ~~iy~~d~~~~~~-----~~l~~~~~~~~~~~~spdg----~~i~~~~~~~~~~~i~~~d~~~~~--~--~~l~~~-~~~  367 (417)
T TIGR02800       302 PQIYMMDADGGEV-----RRLTFRGGYNASPSWSPDG----DLIAFVHREGGGFNIAVMDLDGGG--E--RVLTDT-GLD  367 (417)
T ss_pred             ceEEEEECCCCCE-----EEeecCCCCccCeEECCCC----CEEEEEEccCCceEEEEEeCCCCC--e--EEccCC-CCC
Confidence             466666655421     1233345567788999986    6677777665   67777776421  1  222221 123


Q ss_pred             EEEEEccCCCEEEEecCC
Q 022111          262 WSVSWSLTGNLLAVADAN  279 (302)
Q Consensus       262 ~~~~~spdg~~la~~~~d  279 (302)
                      ...+|+|||++|+.+..+
T Consensus       368 ~~p~~spdg~~l~~~~~~  385 (417)
T TIGR02800       368 ESPSFAPNGRMILYATTR  385 (417)
T ss_pred             CCceECCCCCEEEEEEeC
Confidence            456899999988887654

The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.

>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB

Probab=99.19  E-value=6.7e-09  Score=94.01  Aligned_cols=188  Identities=22%  Similarity=0.260  Sum_probs=112.2

Q ss_pred             ccccceeEEEEccCCCEEEEeeCC---CcEEEEeecCCCceEEEEecCcccCeEEEEeeCCCCCCEEE-EEeCCC--eEE
Q 022111            9 GHEDTVHDVAMDFYGKRLATASSD---SSIKIIGLSNSASQHLATLKGHRGPVWQVAWAHPKFGSILA-SCSYDG--QVI   82 (302)
Q Consensus         9 ~h~~~v~~~~~s~~~~~l~s~~~d---~~v~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~-s~s~D~--~i~   82 (302)
                      .+...+.+..|+|||++|+.+..+   ..|++|++..+....   +..+...+.+++|+++  |+.|+ +.+.++  .|.
T Consensus       187 ~~~~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~~~---~~~~~~~~~~~~~spD--g~~l~~~~~~~~~~~i~  261 (417)
T TIGR02800       187 RSREPILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQREK---VASFPGMNGAPAFSPD--GSKLAVSLSKDGNPDIY  261 (417)
T ss_pred             cCCCceecccCCCCCCEEEEEEcCCCCcEEEEEECCCCCEEE---eecCCCCccceEECCC--CCEEEEEECCCCCccEE
Confidence            455568888999999999877654   479999986543322   3334455667899864  66554 555554  477


Q ss_pred             EEEcCCCCceeEEEEecCCCCCeeEEEecCCCCCcEEEEEec-CC--cEEEEEecCCCCeeeeeecccCCCCeEEEEeCC
Q 022111           83 IWKEGNQNDWTQAHTFNDHKSSVNSIAWAPHELGLSLACGSS-DG--NISVFTATADGGWDTTRIDQAHPVGVTSVSWAP  159 (302)
Q Consensus        83 iwd~~~~~~~~~~~~~~~h~~~i~~l~~~pd~~~~~l~sg~~-d~--~v~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~  159 (302)
                      +||+.+..    ...+..+........|+||  +..|+..+. ++  .|.++++... ...  .+. .+...+..+.|+|
T Consensus       262 ~~d~~~~~----~~~l~~~~~~~~~~~~s~d--g~~l~~~s~~~g~~~iy~~d~~~~-~~~--~l~-~~~~~~~~~~~sp  331 (417)
T TIGR02800       262 VMDLDGKQ----LTRLTNGPGIDTEPSWSPD--GKSIAFTSDRGGSPQIYMMDADGG-EVR--RLT-FRGGYNASPSWSP  331 (417)
T ss_pred             EEECCCCC----EEECCCCCCCCCCEEECCC--CCEEEEEECCCCCceEEEEECCCC-CEE--Eee-cCCCCccCeEECC
Confidence            77876542    2344445555567789998  556665544 34  4555555422 221  221 2233456677887


Q ss_pred             CCCCCceeecccCCCceeEEEeeCCC---cEEEEEEecCccccccccccccCCCceeEEEeeCCCCCCccEEEEEecCC
Q 022111          160 AMAPGALVGLGLLDPVQKLASCGCDN---TVKVWKMYNGIWKMDCFPALQMHSDWVRSVAWAPNLGLPKSTIASASQDG  235 (302)
Q Consensus       160 ~~~~~~~~~~~~~~~~~~l~s~~~D~---~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~l~s~s~D~  235 (302)
                      ++              ++|+.++.++   .|.+||+.++..  ..+   ... ......+|+|++    +.|+..+.++
T Consensus       332 dg--------------~~i~~~~~~~~~~~i~~~d~~~~~~--~~l---~~~-~~~~~p~~spdg----~~l~~~~~~~  386 (417)
T TIGR02800       332 DG--------------DLIAFVHREGGGFNIAVMDLDGGGE--RVL---TDT-GLDESPSFAPNG----RMILYATTRG  386 (417)
T ss_pred             CC--------------CEEEEEEccCCceEEEEEeCCCCCe--EEc---cCC-CCCCCceECCCC----CEEEEEEeCC
Confidence            64              5666666655   678888776422  111   111 123456899996    5666666554

The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.

>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]

Probab=99.17  E-value=2.5e-10  Score=112.28  Aligned_cols=187  Identities=17%  Similarity=0.274  Sum_probs=135.4

Q ss_pred             ceeEEEEccCCCEEEEeeCCCcEEEEeecCCCceEEEEecCcccCeEEEEeeCCCCCCEEEEEeCCCeEEEEEcCCCCce
Q 022111           13 TVHDVAMDFYGKRLATASSDSSIKIIGLSNSASQHLATLKGHRGPVWQVAWAHPKFGSILASCSYDGQVIIWKEGNQNDW   92 (302)
Q Consensus        13 ~v~~~~~s~~~~~l~s~~~d~~v~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~s~D~~i~iwd~~~~~~~   92 (302)
                      .|..+.-+|...+-+||+.||.|++|....+.........|. +.|+.++|++.  |+.+..+..||.+.+|....    
T Consensus      2210 ~v~r~~sHp~~~~Yltgs~dgsv~~~~w~~~~~v~~~rt~g~-s~vtr~~f~~q--Gnk~~i~d~dg~l~l~q~~p---- 2282 (2439)
T KOG1064|consen 2210 NVRRMTSHPSDPYYLTGSQDGSVRMFEWGHGQQVVCFRTAGN-SRVTRSRFNHQ--GNKFGIVDGDGDLSLWQASP---- 2282 (2439)
T ss_pred             ceeeecCCCCCceEEecCCCceEEEEeccCCCeEEEeeccCc-chhhhhhhccc--CCceeeeccCCceeecccCC----
Confidence            455555567677889999999999999865443222222344 78999999864  88888999999999998752    


Q ss_pred             eEEEEecCCCCCeeEEEecCCCCCcEEEEE---ecCCcEEEEEecCCCCeeeeeecccCCCCeEEEEeCCCCCCCceeec
Q 022111           93 TQAHTFNDHKSSVNSIAWAPHELGLSLACG---SSDGNISVFTATADGGWDTTRIDQAHPVGVTSVSWAPAMAPGALVGL  169 (302)
Q Consensus        93 ~~~~~~~~h~~~i~~l~~~pd~~~~~l~sg---~~d~~v~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~  169 (302)
                      ++....+-|+.....++|-.    ..++++   ++++++.+||........+..  ..|...++++++.|..        
T Consensus      2283 k~~~s~qchnk~~~Df~Fi~----s~~~tag~s~d~~n~~lwDtl~~~~~s~v~--~~H~~gaT~l~~~P~~-------- 2348 (2439)
T KOG1064|consen 2283 KPYTSWQCHNKALSDFRFIG----SLLATAGRSSDNRNVCLWDTLLPPMNSLVH--TCHDGGATVLAYAPKH-------- 2348 (2439)
T ss_pred             cceeccccCCccccceeeee----hhhhccccCCCCCcccchhcccCcccceee--eecCCCceEEEEcCcc--------
Confidence            24445666888888888863    345555   356899999875332222222  4799999999999863        


Q ss_pred             ccCCCceeEEEeeCCCcEEEEEEecCccccccccccccCCCceeEEEeeCCCCCCccEEEEEecCCeEEEEEecc
Q 022111          170 GLLDPVQKLASCGCDNTVKVWKMYNGIWKMDCFPALQMHSDWVRSVAWAPNLGLPKSTIASASQDGTVVIWTCAK  244 (302)
Q Consensus       170 ~~~~~~~~l~s~~~D~~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~l~s~s~D~~i~iwd~~~  244 (302)
                            +.|+|||.+|.|+|||++..+    ..+++..         +..     ..+|++|+..|+|+||++..
T Consensus      2349 ------qllisggr~G~v~l~D~rqrq----l~h~~~~---------~~~-----~~~f~~~ss~g~ikIw~~s~ 2399 (2439)
T KOG1064|consen 2349 ------QLLISGGRKGEVCLFDIRQRQ----LRHTFQA---------LDT-----REYFVTGSSEGNIKIWRLSE 2399 (2439)
T ss_pred             ------eEEEecCCcCcEEEeehHHHH----HHHHhhh---------hhh-----hheeeccCcccceEEEEccc
Confidence                  789999999999999998652    2233321         221     36799999999999999875

>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]

Probab=99.16  E-value=7.2e-10  Score=92.13  Aligned_cols=223  Identities=17%  Similarity=0.271  Sum_probs=134.7

Q ss_pred             EEEccCCCEEEEeeCCCcEEEEeecCCCceEEEEecCcccCeEEEEeeCCCCCCEEEEEeCCCeEEEEEcCCCCceeEEE
Q 022111           17 VAMDFYGKRLATASSDSSIKIIGLSNSASQHLATLKGHRGPVWQVAWAHPKFGSILASCSYDGQVIIWKEGNQNDWTQAH   96 (302)
Q Consensus        17 ~~~s~~~~~l~s~~~d~~v~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~s~D~~i~iwd~~~~~~~~~~~   96 (302)
                      ++|||+|+++|+++.- .+-|=|.  .+.+.. .+-.--+.|.-|.|..++ -.+|.....|+.|.+|++... .|.+  
T Consensus        14 c~fSp~g~yiAs~~~y-rlviRd~--~tlq~~-qlf~cldki~yieW~ads-~~ilC~~yk~~~vqvwsl~Qp-ew~c--   85 (447)
T KOG4497|consen   14 CSFSPCGNYIASLSRY-RLVIRDS--ETLQLH-QLFLCLDKIVYIEWKADS-CHILCVAYKDPKVQVWSLVQP-EWYC--   85 (447)
T ss_pred             eeECCCCCeeeeeeee-EEEEecc--chhhHH-HHHHHHHHhhheeeeccc-eeeeeeeeccceEEEEEeecc-eeEE--
Confidence            6899999999998755 3333232  222211 111123556678887653 346777789999999998643 3333  


Q ss_pred             EecCCCCCeeEEEecCCCCCcEEEEEecCCcEEEEEecCCCCeeeeeecccCCCCeEEEEeCCCCCCCceeecccCCCce
Q 022111           97 TFNDHKSSVNSIAWAPHELGLSLACGSSDGNISVFTATADGGWDTTRIDQAHPVGVTSVSWAPAMAPGALVGLGLLDPVQ  176 (302)
Q Consensus        97 ~~~~h~~~i~~l~~~pd~~~~~l~sg~~d~~v~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~  176 (302)
                      ++....+.+.++.||||.+ .+|.+..-+-.|.+|.+.+.....   +. .....+..++|.|++              +
T Consensus        86 kIdeg~agls~~~WSPdgr-hiL~tseF~lriTVWSL~t~~~~~---~~-~pK~~~kg~~f~~dg--------------~  146 (447)
T KOG4497|consen   86 KIDEGQAGLSSISWSPDGR-HILLTSEFDLRITVWSLNTQKGYL---LP-HPKTNVKGYAFHPDG--------------Q  146 (447)
T ss_pred             EeccCCCcceeeeECCCcc-eEeeeecceeEEEEEEeccceeEE---ec-ccccCceeEEECCCC--------------c
Confidence            4556778899999999942 467788889999999987654321   11 112345778888864              5


Q ss_pred             eEEEeeCCCcEEEEEEec-CccccccccccccCCCceeEEEeeCCCCCCccEEEEEecCCeEEEEEeccCCcceeeeee-
Q 022111          177 KLASCGCDNTVKVWKMYN-GIWKMDCFPALQMHSDWVRSVAWAPNLGLPKSTIASASQDGTVVIWTCAKEGEQWEGRVL-  254 (302)
Q Consensus       177 ~l~s~~~D~~v~iwd~~~-~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~l~s~s~D~~i~iwd~~~~~~~~~~~~~-  254 (302)
                      +.+.++.-.......+.. ..|  ..+..+..-+--.+.+.|+||+    +.         +-+||---+     ..+. 
T Consensus       147 f~ai~sRrDCkdyv~i~~c~~W--~ll~~f~~dT~DltgieWsPdg----~~---------laVwd~~Le-----ykv~a  206 (447)
T KOG4497|consen  147 FCAILSRRDCKDYVQISSCKAW--ILLKEFKLDTIDLTGIEWSPDG----NW---------LAVWDNVLE-----YKVYA  206 (447)
T ss_pred             eeeeeecccHHHHHHHHhhHHH--HHHHhcCCCcccccCceECCCC----cE---------EEEecchhh-----heeee
Confidence            555554321111111110 011  1122333333335789999985    44         457874321     1111 


Q ss_pred             ccCCCcEEEEEEccCCCEEEEecCC-ceEEeee
Q 022111          255 KDFKTPVWSVSWSLTGNLLAVADAN-NVTLWKE  286 (302)
Q Consensus       255 ~~~~~~v~~~~~spdg~~la~~~~d-~i~~w~~  286 (302)
                      -+-+-.+..++|||.+++|++|+.| .+|+-+.
T Consensus       207 Ye~~lG~k~v~wsP~~qflavGsyD~~lrvlnh  239 (447)
T KOG4497|consen  207 YERGLGLKFVEWSPCNQFLAVGSYDQMLRVLNH  239 (447)
T ss_pred             eeeccceeEEEeccccceEEeeccchhhhhhce
Confidence            1223468899999999999999999 5777553

>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]

Probab=99.16  E-value=1.1e-09  Score=91.58  Aligned_cols=228  Identities=15%  Similarity=0.294  Sum_probs=131.5

Q ss_pred             ccCeEEEEeeCCCCCCEEEEEeCCCeEEEEEcCCCCc--eeEEEEecCC------------CCCeeEEEecCCCCCcEEE
Q 022111           55 RGPVWQVAWAHPKFGSILASCSYDGQVIIWKEGNQND--WTQAHTFNDH------------KSSVNSIAWAPHELGLSLA  120 (302)
Q Consensus        55 ~~~v~~v~~~~~~~~~~l~s~s~D~~i~iwd~~~~~~--~~~~~~~~~h------------~~~i~~l~~~pd~~~~~l~  120 (302)
                      ...|.+|.|.+  .|.+||||..+|.|.++.-.....  ..-...++.|            ..+|+.+.|.++.+...++
T Consensus        25 adiis~vef~~--~Ge~LatGdkgGRVv~f~r~~~~~~ey~~~t~fqshepEFDYLkSleieEKinkIrw~~~~n~a~FL  102 (433)
T KOG1354|consen   25 ADIISAVEFDH--YGERLATGDKGGRVVLFEREKLYKGEYNFQTEFQSHEPEFDYLKSLEIEEKINKIRWLDDGNLAEFL  102 (433)
T ss_pred             hcceeeEEeec--ccceEeecCCCCeEEEeecccccccceeeeeeeeccCcccchhhhhhhhhhhhhceecCCCCccEEE
Confidence            34678999975  499999999999999996432211  1011122222            3688999999886666778


Q ss_pred             EEecCCcEEEEEecCCCCee-e-eeecccCCCCeEEEE------------eCC-----CCCCCceeecccCCCceeEEEe
Q 022111          121 CGSSDGNISVFTATADGGWD-T-TRIDQAHPVGVTSVS------------WAP-----AMAPGALVGLGLLDPVQKLASC  181 (302)
Q Consensus       121 sg~~d~~v~~~~~~~~~~~~-~-~~~~~~h~~~v~~~~------------~~~-----~~~~~~~~~~~~~~~~~~l~s~  181 (302)
                      ....|++|++|.+...+... - ....+.....++++.            .+|     ..++..+.++...+++..++|+
T Consensus       103 lstNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaHtyhiNSIS~NsD~Et~lSA  182 (433)
T KOG1354|consen  103 LSTNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAHTYHINSISVNSDKETFLSA  182 (433)
T ss_pred             EecCCcceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccccceeEeeeeeecCccceEeec
Confidence            88899999999886422100 0 000000111111111            001     1111112222222344556654


Q ss_pred             eCCCcEEEEEEecCcccccccccccc-----CCCceeEEEeeCCCCCCccEEEEEecCCeEEEEEeccCC-----cc-ee
Q 022111          182 GCDNTVKVWKMYNGIWKMDCFPALQM-----HSDWVRSVAWAPNLGLPKSTIASASQDGTVVIWTCAKEG-----EQ-WE  250 (302)
Q Consensus       182 ~~D~~v~iwd~~~~~~~~~~~~~~~~-----h~~~v~~v~~~p~~~~~~~~l~s~s~D~~i~iwd~~~~~-----~~-~~  250 (302)
                       .|=.|.+|.+.-....+..+ ..+.     -..-|++.-|+|..   -+.++-.|.-|+||+-|++...     .. ..
T Consensus       183 -DdLRINLWnlei~d~sFnIV-DIKP~nmEeLteVITsaEFhp~~---cn~f~YSSSKGtIrLcDmR~~aLCd~hsKlfE  257 (433)
T KOG1354|consen  183 -DDLRINLWNLEIIDQSFNIV-DIKPANMEELTEVITSAEFHPHH---CNVFVYSSSKGTIRLCDMRQSALCDAHSKLFE  257 (433)
T ss_pred             -cceeeeeccccccCCceeEE-EccccCHHHHHHHHhhhccCHhH---ccEEEEecCCCcEEEeechhhhhhcchhhhhc
Confidence             56678999985332111111 1111     12458889999974   3789999999999999998421     00 00


Q ss_pred             -------eeeeccCCCcEEEEEEccCCCEEEEecCCceEEeeecCC
Q 022111          251 -------GRVLKDFKTPVWSVSWSLTGNLLAVADANNVTLWKEAVD  289 (302)
Q Consensus       251 -------~~~~~~~~~~v~~~~~spdg~~la~~~~d~i~~w~~~~~  289 (302)
                             .....+.-..|..+.||++|+++++=+=.+|++||.+.+
T Consensus       258 epedp~~rsffseiIsSISDvKFs~sGryilsRDyltvk~wD~nme  303 (433)
T KOG1354|consen  258 EPEDPSSRSFFSEIISSISDVKFSHSGRYILSRDYLTVKLWDLNME  303 (433)
T ss_pred             cccCCcchhhHHHHhhhhhceEEccCCcEEEEeccceeEEEecccc
Confidence                   000011123577899999999988765558999998543

>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]

Probab=99.15  E-value=8.5e-07  Score=75.08  Aligned_cols=262  Identities=15%  Similarity=0.239  Sum_probs=160.2

Q ss_pred             cccceeEEEEccCCCEEEEeeCC---CcEEEEeecCCCc--eEEE--EecCcccCeEEEEeeCCCCCCEEEEEeC-CCeE
Q 022111           10 HEDTVHDVAMDFYGKRLATASSD---SSIKIIGLSNSAS--QHLA--TLKGHRGPVWQVAWAHPKFGSILASCSY-DGQV   81 (302)
Q Consensus        10 h~~~v~~~~~s~~~~~l~s~~~d---~~v~lw~~~~~~~--~~~~--~~~~h~~~v~~v~~~~~~~~~~l~s~s~-D~~i   81 (302)
                      +....+=++|++++++|.++-.+   +.|.-|.++...+  ..+.  .+.++  +-+.+++++  ++++|+++.. -+.|
T Consensus        38 ~~~nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~~~~~g~--~p~yvsvd~--~g~~vf~AnY~~g~v  113 (346)
T COG2706          38 ELGNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDDGRLTFLNRQTLPGS--PPCYVSVDE--DGRFVFVANYHSGSV  113 (346)
T ss_pred             ccCCCceEEECCCCCEEEEEEecCCcCcEEEEEEcCCCCeEEEeeccccCCC--CCeEEEECC--CCCEEEEEEccCceE
Confidence            34455668999999999888644   6788887764322  2222  22232  225678765  3788887764 6789


Q ss_pred             EEEEcCCCCc-eeEEEEecCCCCC----------eeEEEecCCCCCcEEEEEecC-CcEEEEEecCCCCeeee-eecccC
Q 022111           82 IIWKEGNQND-WTQAHTFNDHKSS----------VNSIAWAPHELGLSLACGSSD-GNISVFTATADGGWDTT-RIDQAH  148 (302)
Q Consensus        82 ~iwd~~~~~~-~~~~~~~~~h~~~----------i~~l~~~pd~~~~~l~sg~~d-~~v~~~~~~~~~~~~~~-~~~~~h  148 (302)
                      .++.++.... +.....+ .|.+.          +=+..+.|+  +++|++.+.. -.|.+|++. ++.+... ......
T Consensus       114 ~v~p~~~dG~l~~~v~~~-~h~g~~p~~rQ~~~h~H~a~~tP~--~~~l~v~DLG~Dri~~y~~~-dg~L~~~~~~~v~~  189 (346)
T COG2706         114 SVYPLQADGSLQPVVQVV-KHTGSGPHERQESPHVHSANFTPD--GRYLVVPDLGTDRIFLYDLD-DGKLTPADPAEVKP  189 (346)
T ss_pred             EEEEcccCCccccceeee-ecCCCCCCccccCCccceeeeCCC--CCEEEEeecCCceEEEEEcc-cCccccccccccCC
Confidence            9998855332 2222222 25444          667778898  6677776543 478899987 3333221 111122


Q ss_pred             CCCeEEEEeCCCCCCCceeecccCCCcee-EEEeeCCCcEEEEEEecCccccccccccc------cCCCceeEEEeeCCC
Q 022111          149 PVGVTSVSWAPAMAPGALVGLGLLDPVQK-LASCGCDNTVKVWKMYNGIWKMDCFPALQ------MHSDWVRSVAWAPNL  221 (302)
Q Consensus       149 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~~-l~s~~~D~~v~iwd~~~~~~~~~~~~~~~------~h~~~v~~v~~~p~~  221 (302)
                      ...-+.+.|+|++              ++ .+.+--+++|-+|.......++..++.+.      .-..+..+|..+|||
T Consensus       190 G~GPRHi~FHpn~--------------k~aY~v~EL~stV~v~~y~~~~g~~~~lQ~i~tlP~dF~g~~~~aaIhis~dG  255 (346)
T COG2706         190 GAGPRHIVFHPNG--------------KYAYLVNELNSTVDVLEYNPAVGKFEELQTIDTLPEDFTGTNWAAAIHISPDG  255 (346)
T ss_pred             CCCcceEEEcCCC--------------cEEEEEeccCCEEEEEEEcCCCceEEEeeeeccCccccCCCCceeEEEECCCC
Confidence            3456889999864              33 34455589999999876433333333221      124567789999996


Q ss_pred             CCCccEEEEEe-cCCeEEEEEeccCCcceee-eeeccCCCcEEEEEEccCCCEEEEecCC--ceEEeee-cCCceEEEee
Q 022111          222 GLPKSTIASAS-QDGTVVIWTCAKEGEQWEG-RVLKDFKTPVWSVSWSLTGNLLAVADAN--NVTLWKE-AVDGEWQQVS  296 (302)
Q Consensus       222 ~~~~~~l~s~s-~D~~i~iwd~~~~~~~~~~-~~~~~~~~~v~~~~~spdg~~la~~~~d--~i~~w~~-~~~~~~~~~~  296 (302)
                          ++|-++. ....|-+|.+......... .....+........|+|+|++|+++..+  +|.++.. ...|++.+..
T Consensus       256 ----rFLYasNRg~dsI~~f~V~~~~g~L~~~~~~~teg~~PR~F~i~~~g~~Liaa~q~sd~i~vf~~d~~TG~L~~~~  331 (346)
T COG2706         256 ----RFLYASNRGHDSIAVFSVDPDGGKLELVGITPTEGQFPRDFNINPSGRFLIAANQKSDNITVFERDKETGRLTLLG  331 (346)
T ss_pred             ----CEEEEecCCCCeEEEEEEcCCCCEEEEEEEeccCCcCCccceeCCCCCEEEEEccCCCcEEEEEEcCCCceEEecc
Confidence                5555443 2447888887654322111 1111222336788999999999999776  6999987 5677776655


Q ss_pred             e
Q 022111          297 V  297 (302)
Q Consensus       297 ~  297 (302)
                      +
T Consensus       332 ~  332 (346)
T COG2706         332 R  332 (346)
T ss_pred             c
Confidence            4

>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]

Probab=99.15  E-value=3.5e-09  Score=99.65  Aligned_cols=184  Identities=18%  Similarity=0.254  Sum_probs=131.5

Q ss_pred             CCEEEEEeCCCeEEEEEcCCCCceeEEEEecCCCCCee---E--EEecCCCCCcEEEEEecCCcEEEEEecCCCCeeeee
Q 022111           69 GSILASCSYDGQVIIWKEGNQNDWTQAHTFNDHKSSVN---S--IAWAPHELGLSLACGSSDGNISVFTATADGGWDTTR  143 (302)
Q Consensus        69 ~~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~h~~~i~---~--l~~~pd~~~~~l~sg~~d~~v~~~~~~~~~~~~~~~  143 (302)
                      .+.++.+..+..+.+||.....   ....+. +..+..   +  +.++++  ..++++|+.-+.|.+|+...+.. . ..
T Consensus        99 ~k~i~l~~~~ns~~i~d~~~~~---~~~~i~-~~er~~l~~~~~~g~s~~--~~~i~~gsv~~~iivW~~~~dn~-p-~~  170 (967)
T KOG0974|consen   99 NKKIALVTSRNSLLIRDSKNSS---VLSKIQ-SDERCTLYSSLIIGDSAE--ELYIASGSVFGEIIVWKPHEDNK-P-IR  170 (967)
T ss_pred             cceEEEEEcCceEEEEecccCc---eehhcC-CCceEEEEeEEEEeccCc--EEEEEeccccccEEEEeccccCC-c-ce
Confidence            4577888888899999876542   122221 332221   1  123444  45899999999999998763321 1 22


Q ss_pred             ecccCCCCeEEEEeCCCCCCCceeecccCCCceeEEEeeCCCcEEEEEEecCccccccccccccCCCceeEEEeeCCCCC
Q 022111          144 IDQAHPVGVTSVSWAPAMAPGALVGLGLLDPVQKLASCGCDNTVKVWKMYNGIWKMDCFPALQMHSDWVRSVAWAPNLGL  223 (302)
Q Consensus       144 ~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~D~~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~  223 (302)
                      + .+|...+.++.|+.+              +.+++|+|.|+++|+|++.+....   ..+.-+|...|..+.|.|+   
T Consensus       171 l-~GHeG~iF~i~~s~d--------------g~~i~s~SdDRsiRlW~i~s~~~~---~~~~fgHsaRvw~~~~~~n---  229 (967)
T KOG0974|consen  171 L-KGHEGSIFSIVTSLD--------------GRYIASVSDDRSIRLWPIDSREVL---GCTGFGHSARVWACCFLPN---  229 (967)
T ss_pred             e-cccCCceEEEEEccC--------------CcEEEEEecCcceeeeeccccccc---CcccccccceeEEEEeccc---
Confidence            3 389999999998865              589999999999999999876321   1245689999999999986   


Q ss_pred             CccEEEEEecCCeEEEEEeccCCcceeeeeeccCCCcEEEEEEccCCCEEEEecCC-ceEEeeec
Q 022111          224 PKSTIASASQDGTVVIWTCAKEGEQWEGRVLKDFKTPVWSVSWSLTGNLLAVADAN-NVTLWKEA  287 (302)
Q Consensus       224 ~~~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~la~~~~d-~i~~w~~~  287 (302)
                         .|+|+++|-++++|+....  ++. .........+|.++..++..++++++.| ++++|+..
T Consensus       230 ---~i~t~gedctcrvW~~~~~--~l~-~y~~h~g~~iw~~~~~~~~~~~vT~g~Ds~lk~~~l~  288 (967)
T KOG0974|consen  230 ---RIITVGEDCTCRVWGVNGT--QLE-VYDEHSGKGIWKIAVPIGVIIKVTGGNDSTLKLWDLN  288 (967)
T ss_pred             ---eeEEeccceEEEEEecccc--eeh-hhhhhhhcceeEEEEcCCceEEEeeccCcchhhhhhh
Confidence               4999999999999976532  222 2212234569999998888888888888 79999964

>PRK00178 tolB translocation protein TolB; Provisional

Probab=99.14  E-value=2.9e-08  Score=90.36  Aligned_cols=219  Identities=19%  Similarity=0.211  Sum_probs=119.1

Q ss_pred             ccccceeEEEEccCCCEEEEeeCC---CcEEEEeecCCCceEEEEecCcccCeEEEEeeCCCCCCEEE-EEeCCC--eEE
Q 022111            9 GHEDTVHDVAMDFYGKRLATASSD---SSIKIIGLSNSASQHLATLKGHRGPVWQVAWAHPKFGSILA-SCSYDG--QVI   82 (302)
Q Consensus         9 ~h~~~v~~~~~s~~~~~l~s~~~d---~~v~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~-s~s~D~--~i~   82 (302)
                      .+...+....|+|||++|+..+.+   ..|.+|++.++..+.+....   +.+...+|+|+  |+.|+ +.+.++  .|.
T Consensus       196 ~~~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~~l~~~~---g~~~~~~~SpD--G~~la~~~~~~g~~~Iy  270 (430)
T PRK00178        196 QSREPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRREQITNFE---GLNGAPAWSPD--GSKLAFVLSKDGNPEIY  270 (430)
T ss_pred             cCCCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEEEccCCC---CCcCCeEECCC--CCEEEEEEccCCCceEE
Confidence            456678888999999998876644   35788888655433333333   33456889864  67665 555555  466


Q ss_pred             EEEcCCCCceeEEEEecCCCCCeeEEEecCCCCCcEEEEEe-cCCc--EEEEEecCCCCeeeeeecccCCCCeEEEEeCC
Q 022111           83 IWKEGNQNDWTQAHTFNDHKSSVNSIAWAPHELGLSLACGS-SDGN--ISVFTATADGGWDTTRIDQAHPVGVTSVSWAP  159 (302)
Q Consensus        83 iwd~~~~~~~~~~~~~~~h~~~i~~l~~~pd~~~~~l~sg~-~d~~--v~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~  159 (302)
                      +||+.++.    ...+..+........|+||  +..++..+ .++.  |.++++... ........ .  .......|+|
T Consensus       271 ~~d~~~~~----~~~lt~~~~~~~~~~~spD--g~~i~f~s~~~g~~~iy~~d~~~g-~~~~lt~~-~--~~~~~~~~Sp  340 (430)
T PRK00178        271 VMDLASRQ----LSRVTNHPAIDTEPFWGKD--GRTLYFTSDRGGKPQIYKVNVNGG-RAERVTFV-G--NYNARPRLSA  340 (430)
T ss_pred             EEECCCCC----eEEcccCCCCcCCeEECCC--CCEEEEEECCCCCceEEEEECCCC-CEEEeecC-C--CCccceEECC
Confidence            77876542    2344455556677889998  55555544 3444  444554332 22211111 1  1223467887


Q ss_pred             CCCCCceeecccCCCceeEEEeeC-CC--cEEEEEEecCccccccccccccCCCceeEEEeeCCCCCCccEEEEEe-cCC
Q 022111          160 AMAPGALVGLGLLDPVQKLASCGC-DN--TVKVWKMYNGIWKMDCFPALQMHSDWVRSVAWAPNLGLPKSTIASAS-QDG  235 (302)
Q Consensus       160 ~~~~~~~~~~~~~~~~~~l~s~~~-D~--~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~l~s~s-~D~  235 (302)
                      ++              +.|+..+. ++  .|.++|+.++..  ..+..    ........|+||+    +.|+..+ .++
T Consensus       341 dg--------------~~i~~~~~~~~~~~l~~~dl~tg~~--~~lt~----~~~~~~p~~spdg----~~i~~~~~~~g  396 (430)
T PRK00178        341 DG--------------KTLVMVHRQDGNFHVAAQDLQRGSV--RILTD----TSLDESPSVAPNG----TMLIYATRQQG  396 (430)
T ss_pred             CC--------------CEEEEEEccCCceEEEEEECCCCCE--EEccC----CCCCCCceECCCC----CEEEEEEecCC
Confidence            64              45544443 33  477888876532  11111    1122356899996    5555544 344


Q ss_pred             eEEEEEeccCCcceeeeeeccCCCcEEEEEEcc
Q 022111          236 TVVIWTCAKEGEQWEGRVLKDFKTPVWSVSWSL  268 (302)
Q Consensus       236 ~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp  268 (302)
                      .-+||-+...+..  ...+....+.+...+|||
T Consensus       397 ~~~l~~~~~~g~~--~~~l~~~~g~~~~p~ws~  427 (430)
T PRK00178        397 RGVLMLVSINGRV--RLPLPTAQGEVREPSWSP  427 (430)
T ss_pred             ceEEEEEECCCCc--eEECcCCCCCcCCCccCC
Confidence            4344433322211  112222334566677776

>KOG2321 consensus WD40 repeat protein [General function prediction only]

Probab=99.13  E-value=3.5e-09  Score=93.89  Aligned_cols=200  Identities=18%  Similarity=0.280  Sum_probs=134.1

Q ss_pred             EEEEccCCCEEEEeeCCCcEEEEeecCCCceEEEEecCcccCeEEEEeeCCCCCCEEEEEeCCCeEEEEEcCCCCceeEE
Q 022111           16 DVAMDFYGKRLATASSDSSIKIIGLSNSASQHLATLKGHRGPVWQVAWAHPKFGSILASCSYDGQVIIWKEGNQNDWTQA   95 (302)
Q Consensus        16 ~~~~s~~~~~l~s~~~d~~v~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~s~D~~i~iwd~~~~~~~~~~   95 (302)
                      +++++.-.--|+.++....|+-++++.  +..+..+.--.+.+++|..++-  ..+|+.|+.||.+..||.+....-..+
T Consensus       138 Dm~y~~~scDly~~gsg~evYRlNLEq--GrfL~P~~~~~~~lN~v~in~~--hgLla~Gt~~g~VEfwDpR~ksrv~~l  213 (703)
T KOG2321|consen  138 DMKYHKPSCDLYLVGSGSEVYRLNLEQ--GRFLNPFETDSGELNVVSINEE--HGLLACGTEDGVVEFWDPRDKSRVGTL  213 (703)
T ss_pred             cccccCCCccEEEeecCcceEEEEccc--cccccccccccccceeeeecCc--cceEEecccCceEEEecchhhhhheee
Confidence            355543332344455566677778765  3445555555678898988653  468888889999999998765321111


Q ss_pred             E---EecCCC-----CCeeEEEecCCCCCcEEEEEecCCcEEEEEecCCCCeeeeeecccCCCCeEEEEeCCCCCCCcee
Q 022111           96 H---TFNDHK-----SSVNSIAWAPHELGLSLACGSSDGNISVFTATADGGWDTTRIDQAHPVGVTSVSWAPAMAPGALV  167 (302)
Q Consensus        96 ~---~~~~h~-----~~i~~l~~~pd~~~~~l~sg~~d~~v~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~  167 (302)
                      .   ....|.     ..|+++.|+.+  |..++.|..+|.+.|||++...+.  ....+....+|..+.|.+..      
T Consensus       214 ~~~~~v~s~pg~~~~~svTal~F~d~--gL~~aVGts~G~v~iyDLRa~~pl--~~kdh~~e~pi~~l~~~~~~------  283 (703)
T KOG2321|consen  214 DAASSVNSHPGGDAAPSVTALKFRDD--GLHVAVGTSTGSVLIYDLRASKPL--LVKDHGYELPIKKLDWQDTD------  283 (703)
T ss_pred             ecccccCCCccccccCcceEEEecCC--ceeEEeeccCCcEEEEEcccCCce--eecccCCccceeeecccccC------
Confidence            1   112222     34999999865  889999999999999999976443  23333456788999997753      


Q ss_pred             ecccCCCceeEEEeeCCCcEEEEEEecCccccccccccccCCCceeEEEeeCCCCCCccEEEEEecCCeEEEEEeccC
Q 022111          168 GLGLLDPVQKLASCGCDNTVKVWKMYNGIWKMDCFPALQMHSDWVRSVAWAPNLGLPKSTIASASQDGTVVIWTCAKE  245 (302)
Q Consensus       168 ~~~~~~~~~~l~s~~~D~~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~l~s~s~D~~i~iwd~~~~  245 (302)
                            .+..++|+ ....++|||-.++.. +.   . ..-...++++|+-|+.    .+++++-++..+..|-+-..
T Consensus       284 ------~q~~v~S~-Dk~~~kiWd~~~Gk~-~a---s-iEpt~~lND~C~~p~s----Gm~f~Ane~~~m~~yyiP~L  345 (703)
T KOG2321|consen  284 ------QQNKVVSM-DKRILKIWDECTGKP-MA---S-IEPTSDLNDFCFVPGS----GMFFTANESSKMHTYYIPSL  345 (703)
T ss_pred             ------CCceEEec-chHHhhhcccccCCc-ee---e-ccccCCcCceeeecCC----ceEEEecCCCcceeEEcccc
Confidence                  12445554 356799999877631 11   1 1223448999999986    56899999998888877553

>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]

Probab=99.10  E-value=1e-08  Score=85.75  Aligned_cols=162  Identities=22%  Similarity=0.314  Sum_probs=115.6

Q ss_pred             cceeEEEEccCCCEEEEeeCCCcEEEEeecCCC--ceEEEEecCcccCeEEEEeeCCCCCCEEEEEeCCCeEEEEEcCCC
Q 022111           12 DTVHDVAMDFYGKRLATASSDSSIKIIGLSNSA--SQHLATLKGHRGPVWQVAWAHPKFGSILASCSYDGQVIIWKEGNQ   89 (302)
Q Consensus        12 ~~v~~~~~s~~~~~l~s~~~d~~v~lw~~~~~~--~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~s~D~~i~iwd~~~~   89 (302)
                      .+++++.+.+..+.|+.|-..|++.-+.+...-  ...+.....|...|..+-|+-+  .+++++++.|..+.---.+.+
T Consensus        69 ~~~~~~~y~~e~~~L~vg~~ngtvtefs~sedfnkm~~~r~~~~h~~~v~~~if~~~--~e~V~s~~~dk~~~~hc~e~~  146 (404)
T KOG1409|consen   69 SPCSAMEYVSESRRLYVGQDNGTVTEFALSEDFNKMTFLKDYLAHQARVSAIVFSLT--HEWVLSTGKDKQFAWHCTESG  146 (404)
T ss_pred             CCceEeeeeccceEEEEEEecceEEEEEhhhhhhhcchhhhhhhhhcceeeEEecCC--ceeEEEeccccceEEEeeccC
Confidence            467888888888999999999999888764321  1223444579999999888754  578888888876543211111


Q ss_pred             C--------------------------------------ceeEEEEecCCCCCeeEEEecCCCCCcEEEEEecCCcEEEE
Q 022111           90 N--------------------------------------DWTQAHTFNDHKSSVNSIAWAPHELGLSLACGSSDGNISVF  131 (302)
Q Consensus        90 ~--------------------------------------~~~~~~~~~~h~~~i~~l~~~pd~~~~~l~sg~~d~~v~~~  131 (302)
                      +                                      ...++.++.+|.+.+.++.|-|.  ..+|.+|..|..+.+|
T Consensus       147 ~~lg~Y~~~~~~t~~~~d~~~~fvGd~~gqvt~lr~~~~~~~~i~~~~~h~~~~~~l~Wd~~--~~~LfSg~~d~~vi~w  224 (404)
T KOG1409|consen  147 NRLGGYNFETPASALQFDALYAFVGDHSGQITMLKLEQNGCQLITTFNGHTGEVTCLKWDPG--QRLLFSGASDHSVIMW  224 (404)
T ss_pred             CcccceEeeccCCCCceeeEEEEecccccceEEEEEeecCCceEEEEcCcccceEEEEEcCC--CcEEEeccccCceEEE
Confidence            1                                      01234567889999999999876  4589999999999999


Q ss_pred             EecCCCCeeeeeecccCCCCeEEEEeCCCCCCCceeecccCCCceeEEEeeCCCcEEEEEEe
Q 022111          132 TATADGGWDTTRIDQAHPVGVTSVSWAPAMAPGALVGLGLLDPVQKLASCGCDNTVKVWKMY  193 (302)
Q Consensus       132 ~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~D~~v~iwd~~  193 (302)
                      |+.-..... .. .++|...|..+...+..              ++++|++.|+.|-+||++
T Consensus       225 digg~~g~~-~e-l~gh~~kV~~l~~~~~t--------------~~l~S~~edg~i~~w~mn  270 (404)
T KOG1409|consen  225 DIGGRKGTA-YE-LQGHNDKVQALSYAQHT--------------RQLISCGEDGGIVVWNMN  270 (404)
T ss_pred             eccCCccee-ee-eccchhhhhhhhhhhhh--------------eeeeeccCCCeEEEEecc
Confidence            986332222 22 24777777777654432              789999999999999985

>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]

Probab=99.09  E-value=6.3e-08  Score=78.67  Aligned_cols=244  Identities=10%  Similarity=0.019  Sum_probs=146.6

Q ss_pred             EEEccC-----CCEEEEeeCCCcEEEEeecCCCceEEEEecCcccCeEEEEeeCCCCCCEEEEEeCCCeEEEEEcCCCCc
Q 022111           17 VAMDFY-----GKRLATASSDSSIKIIGLSNSASQHLATLKGHRGPVWQVAWAHPKFGSILASCSYDGQVIIWKEGNQND   91 (302)
Q Consensus        17 ~~~s~~-----~~~l~s~~~d~~v~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~s~D~~i~iwd~~~~~~   91 (302)
                      +.|.|-     -.+||.||.-|...+|...+.. .......-|...|.-+.=..+. .--+..++.|.++++.+++....
T Consensus        73 ~~F~p~s~~~kc~~la~gG~~g~fd~~~~~tn~-~h~~~cd~snn~v~~~~r~cd~-~~~~~i~sndht~k~~~~~~~s~  150 (344)
T KOG4532|consen   73 MTFTPGSFINKCVTLADGGASGQFDLFACNTND-GHLYQCDVSNNDVTLVKRYCDL-KFPLNIASNDHTGKTMVVSGDSN  150 (344)
T ss_pred             ccccchHhhccccEEEeccccceeeeecccCcc-cceeeecccccchhhhhhhccc-ccceeeccCCcceeEEEEecCcc
Confidence            555553     2589999999999999886432 2344444454434322111111 12356789999999999865422


Q ss_pred             eeEEEEecCCCC--CeeEEEecCCCCCcEEEEEecCCcEEEEEecCCCCeeeeeecccCCCCeEEEEeCCCCCCCceeec
Q 022111           92 WTQAHTFNDHKS--SVNSIAWAPHELGLSLACGSSDGNISVFTATADGGWDTTRIDQAHPVGVTSVSWAPAMAPGALVGL  169 (302)
Q Consensus        92 ~~~~~~~~~h~~--~i~~l~~~pd~~~~~l~sg~~d~~v~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~  169 (302)
                           .+..|..  .++++.++||  +.++++.++...|-+|.+..++...........+..-.+..|+..         
T Consensus       151 -----~~~~h~~~~~~ns~~~snd--~~~~~~Vgds~~Vf~y~id~~sey~~~~~~a~t~D~gF~~S~s~~---------  214 (344)
T KOG4532|consen  151 -----KFAVHNQNLTQNSLHYSND--PSWGSSVGDSRRVFRYAIDDESEYIENIYEAPTSDHGFYNSFSEN---------  214 (344)
T ss_pred             -----cceeeccccceeeeEEcCC--CceEEEecCCCcceEEEeCCccceeeeeEecccCCCceeeeeccC---------
Confidence                 1222433  3789999998  668999999999999988765543222111111222234555543         


Q ss_pred             ccCCCceeEEEeeCCCcEEEEEEecCccccccccc-cccCCCceeEEEeeCCCCCCccEEEEEecCCeEEEEEeccCCcc
Q 022111          170 GLLDPVQKLASCGCDNTVKVWKMYNGIWKMDCFPA-LQMHSDWVRSVAWAPNLGLPKSTIASASQDGTVVIWTCAKEGEQ  248 (302)
Q Consensus       170 ~~~~~~~~l~s~~~D~~v~iwd~~~~~~~~~~~~~-~~~h~~~v~~v~~~p~~~~~~~~l~s~s~D~~i~iwd~~~~~~~  248 (302)
                           ..++|++..||++.|||++.-...+..... -.-|.+.++.+.|+|-+..  ..|.-.-.=+.+.+-|++....-
T Consensus       215 -----~~~FAv~~Qdg~~~I~DVR~~~tpm~~~sstrp~hnGa~R~c~Fsl~g~l--DLLf~sEhfs~~hv~D~R~~~~~  287 (344)
T KOG4532|consen  215 -----DLQFAVVFQDGTCAIYDVRNMATPMAEISSTRPHHNGAFRVCRFSLYGLL--DLLFISEHFSRVHVVDTRNYVNH  287 (344)
T ss_pred             -----cceEEEEecCCcEEEEEecccccchhhhcccCCCCCCceEEEEecCCCcc--eEEEEecCcceEEEEEcccCcee
Confidence                 368999999999999999865433222211 1248899999999985422  34444444567899998864321


Q ss_pred             eeeeeec-----cCC-CcEEEEEEccCCCEEEEecCCceEEeee
Q 022111          249 WEGRVLK-----DFK-TPVWSVSWSLTGNLLAVADANNVTLWKE  286 (302)
Q Consensus       249 ~~~~~~~-----~~~-~~v~~~~~spdg~~la~~~~d~i~~w~~  286 (302)
                       +..+..     .+. ..|..-.|+-++.-+-++..+.+.=|.+
T Consensus       288 -q~I~i~~d~~~~~~tq~ifgt~f~~~n~s~~v~~e~~~ae~ni  330 (344)
T KOG4532|consen  288 -QVIVIPDDVERKHNTQHIFGTNFNNENESNDVKNELQGAEYNI  330 (344)
T ss_pred             -eEEecCccccccccccccccccccCCCcccccccchhhheeec
Confidence             111111     111 2366777877776665555544444443

>PRK01029 tolB translocation protein TolB; Provisional

Probab=99.09  E-value=9e-08  Score=86.73  Aligned_cols=222  Identities=15%  Similarity=0.171  Sum_probs=119.6

Q ss_pred             ceeEEEEccCCCEE---EEeeCCCc--EEEEeecCCCceEEEEecCcccCeEEEEeeCCCCCCEEEEEeC-----CCeEE
Q 022111           13 TVHDVAMDFYGKRL---ATASSDSS--IKIIGLSNSASQHLATLKGHRGPVWQVAWAHPKFGSILASCSY-----DGQVI   82 (302)
Q Consensus        13 ~v~~~~~s~~~~~l---~s~~~d~~--v~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~s~-----D~~i~   82 (302)
                      .+.+=+|+|||+.+   ++...++.  |.+.++..+....+..+.+   .....+|+|+  |+.||..+.     |..+.
T Consensus       186 ~~~sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~~~~lt~~~g---~~~~p~wSPD--G~~Laf~s~~~g~~di~~~  260 (428)
T PRK01029        186 LSITPTWMHIGSGFPYLYVSYKLGVPKIFLGSLENPAGKKILALQG---NQLMPTFSPR--KKLLAFISDRYGNPDLFIQ  260 (428)
T ss_pred             CcccceEccCCCceEEEEEEccCCCceEEEEECCCCCceEeecCCC---CccceEECCC--CCEEEEEECCCCCcceeEE
Confidence            44556899999752   24444444  5566766554444444444   3456789875  777775542     33445


Q ss_pred             EEEcCCCCceeEEEEecCCCCCeeEEEecCCCCCcEEEEEe-cCCcEEEEEecC--CCCeeeeeecccCCCCeEEEEeCC
Q 022111           83 IWKEGNQNDWTQAHTFNDHKSSVNSIAWAPHELGLSLACGS-SDGNISVFTATA--DGGWDTTRIDQAHPVGVTSVSWAP  159 (302)
Q Consensus        83 iwd~~~~~~~~~~~~~~~h~~~i~~l~~~pd~~~~~l~sg~-~d~~v~~~~~~~--~~~~~~~~~~~~h~~~v~~~~~~~  159 (302)
                      +|++..+...................+|+||  |..|+..+ .++...+|.+..  .+. ....+. .+...+....|+|
T Consensus       261 ~~~~~~g~~g~~~~lt~~~~~~~~~p~wSPD--G~~Laf~s~~~g~~~ly~~~~~~~g~-~~~~lt-~~~~~~~~p~wSP  336 (428)
T PRK01029        261 SFSLETGAIGKPRRLLNEAFGTQGNPSFSPD--GTRLVFVSNKDGRPRIYIMQIDPEGQ-SPRLLT-KKYRNSSCPAWSP  336 (428)
T ss_pred             EeecccCCCCcceEeecCCCCCcCCeEECCC--CCEEEEEECCCCCceEEEEECccccc-ceEEec-cCCCCccceeECC
Confidence            5666542111111222222234467899998  66666655 466666665432  111 112222 2233456788999


Q ss_pred             CCCCCceeecccCCCceeEEEeeCC---CcEEEEEEecCccccccccccccCCCceeEEEeeCCCCCCccEEE-EEec--
Q 022111          160 AMAPGALVGLGLLDPVQKLASCGCD---NTVKVWKMYNGIWKMDCFPALQMHSDWVRSVAWAPNLGLPKSTIA-SASQ--  233 (302)
Q Consensus       160 ~~~~~~~~~~~~~~~~~~l~s~~~D---~~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~l~-s~s~--  233 (302)
                      ++              +.|+..+.+   ..|.+||+.++..     ..+......+.+..|+||+    +.|+ +...  
T Consensus       337 DG--------------~~Laf~~~~~g~~~I~v~dl~~g~~-----~~Lt~~~~~~~~p~wSpDG----~~L~f~~~~~g  393 (428)
T PRK01029        337 DG--------------KKIAFCSVIKGVRQICVYDLATGRD-----YQLTTSPENKESPSWAIDS----LHLVYSAGNSN  393 (428)
T ss_pred             CC--------------CEEEEEEcCCCCcEEEEEECCCCCe-----EEccCCCCCccceEECCCC----CEEEEEECCCC
Confidence            74              555554432   3688999877632     1222223356789999996    4555 3333  


Q ss_pred             CCeEEEEEeccCCcceeeeeeccCCCcEEEEEEccCC
Q 022111          234 DGTVVIWTCAKEGEQWEGRVLKDFKTPVWSVSWSLTG  270 (302)
Q Consensus       234 D~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~spdg  270 (302)
                      ...|.++|+.....   ..+ ....+.+...+|||-.
T Consensus       394 ~~~L~~vdl~~g~~---~~L-t~~~g~~~~p~Ws~~~  426 (428)
T PRK01029        394 ESELYLISLITKKT---RKI-VIGSGEKRFPSWGAFP  426 (428)
T ss_pred             CceEEEEECCCCCE---EEe-ecCCCcccCceecCCC
Confidence            34577777754321   122 2223445667787743

>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A

Probab=99.07  E-value=3.1e-07  Score=81.44  Aligned_cols=251  Identities=15%  Similarity=0.143  Sum_probs=126.4

Q ss_pred             eEEEEccCCCEEEEeeCCCcEEEEeecCCCceEEEEecCcccCeEEEEeeCCCCCCEEEEE-eCCCeEEEEEcCCCCcee
Q 022111           15 HDVAMDFYGKRLATASSDSSIKIIGLSNSASQHLATLKGHRGPVWQVAWAHPKFGSILASC-SYDGQVIIWKEGNQNDWT   93 (302)
Q Consensus        15 ~~~~~s~~~~~l~s~~~d~~v~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~-s~D~~i~iwd~~~~~~~~   93 (302)
                      ..+.|++||+++++++.|+.|.++|+.+.  +.+.+++... .-.+++++++  |++++++ ..++.+.++|.++..   
T Consensus        40 ~~~~~s~Dgr~~yv~~rdg~vsviD~~~~--~~v~~i~~G~-~~~~i~~s~D--G~~~~v~n~~~~~v~v~D~~tle---  111 (369)
T PF02239_consen   40 AGLKFSPDGRYLYVANRDGTVSVIDLATG--KVVATIKVGG-NPRGIAVSPD--GKYVYVANYEPGTVSVIDAETLE---  111 (369)
T ss_dssp             EEEE-TT-SSEEEEEETTSEEEEEETTSS--SEEEEEE-SS-EEEEEEE--T--TTEEEEEEEETTEEEEEETTT-----
T ss_pred             eEEEecCCCCEEEEEcCCCeEEEEECCcc--cEEEEEecCC-CcceEEEcCC--CCEEEEEecCCCceeEecccccc---
Confidence            44779999999999999999999998653  3555554433 2467888864  8876655 579999999987753   


Q ss_pred             EEEEecC-------CCCCeeEEEecCCCCCcEEEEEecCCcEEEEEecCCCCeeeeeecccCCCCeEEEEeCCCCCCCce
Q 022111           94 QAHTFND-------HKSSVNSIAWAPHELGLSLACGSSDGNISVFTATADGGWDTTRIDQAHPVGVTSVSWAPAMAPGAL  166 (302)
Q Consensus        94 ~~~~~~~-------h~~~i~~l~~~pd~~~~~l~sg~~d~~v~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~  166 (302)
                      .++.+..       ...++..+..+|... .++++--..+.|.+-|...........+.  .........|+|++     
T Consensus       112 ~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~-~fVv~lkd~~~I~vVdy~d~~~~~~~~i~--~g~~~~D~~~dpdg-----  183 (369)
T PF02239_consen  112 PVKTIPTGGMPVDGPESRVAAIVASPGRP-EFVVNLKDTGEIWVVDYSDPKNLKVTTIK--VGRFPHDGGFDPDG-----  183 (369)
T ss_dssp             EEEEEE--EE-TTTS---EEEEEE-SSSS-EEEEEETTTTEEEEEETTTSSCEEEEEEE----TTEEEEEE-TTS-----
T ss_pred             ceeecccccccccccCCCceeEEecCCCC-EEEEEEccCCeEEEEEeccccccceeeec--ccccccccccCccc-----
Confidence            3443322       234667777777632 23444334466666565433222222221  11223445666653     


Q ss_pred             eecccCCCceeE-EEeeCCCcEEEEEEecCc---------------------------c---------------------
Q 022111          167 VGLGLLDPVQKL-ASCGCDNTVKVWKMYNGI---------------------------W---------------------  197 (302)
Q Consensus       167 ~~~~~~~~~~~l-~s~~~D~~v~iwd~~~~~---------------------------~---------------------  197 (302)
                               +++ ++.-..+.|-++|..+..                           |                     
T Consensus       184 ---------ry~~va~~~sn~i~viD~~~~k~v~~i~~g~~p~~~~~~~~php~~g~vw~~~~~~~~~~~~ig~~~v~v~  254 (369)
T PF02239_consen  184 ---------RYFLVAANGSNKIAVIDTKTGKLVALIDTGKKPHPGPGANFPHPGFGPVWATSGLGYFAIPLIGTDPVSVH  254 (369)
T ss_dssp             ---------SEEEEEEGGGTEEEEEETTTTEEEEEEE-SSSBEETTEEEEEETTTEEEEEEEBSSSSEEEEEE--TTT-S
T ss_pred             ---------ceeeecccccceeEEEeeccceEEEEeeccccccccccccccCCCcceEEeeccccceecccccCCccccc
Confidence                     222 222223333333322210                           0                     


Q ss_pred             ---ccccccccccCCCceeEEEeeCCCCCCccEEEEE----ecCCeEEEEEeccCCcceeeeeeccCCCcEEEEEEccCC
Q 022111          198 ---KMDCFPALQMHSDWVRSVAWAPNLGLPKSTIASA----SQDGTVVIWTCAKEGEQWEGRVLKDFKTPVWSVSWSLTG  270 (302)
Q Consensus       198 ---~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~l~s~----s~D~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~spdg  270 (302)
                         ..+.++++...... .-+.-+|++    .++...    ....+|.++|.++...  ...+.......+..++|++||
T Consensus       255 d~~~wkvv~~I~~~G~g-lFi~thP~s----~~vwvd~~~~~~~~~v~viD~~tl~~--~~~i~~~~~~~~~h~ef~~dG  327 (369)
T PF02239_consen  255 DDYAWKVVKTIPTQGGG-LFIKTHPDS----RYVWVDTFLNPDADTVQVIDKKTLKV--VKTITPGPGKRVVHMEFNPDG  327 (369)
T ss_dssp             TTTBTSEEEEEE-SSSS---EE--TT-----SEEEEE-TT-SSHT-EEEEECCGTEE--EE-HHHHHT--EEEEEE-TTS
T ss_pred             hhhcCeEEEEEECCCCc-ceeecCCCC----ccEEeeccCCCCCceEEEEECcCcce--eEEEeccCCCcEeccEECCCC
Confidence               00111122222222 456668875    555555    5567899999876421  111111222348899999999


Q ss_pred             CEEEEe--cCC-ceEEeeecCCceEEEeee
Q 022111          271 NLLAVA--DAN-NVTLWKEAVDGEWQQVSV  297 (302)
Q Consensus       271 ~~la~~--~~d-~i~~w~~~~~~~~~~~~~  297 (302)
                      +++-++  ..+ .|.++|...-....+.++
T Consensus       328 ~~v~vS~~~~~~~i~v~D~~Tl~~~~~i~~  357 (369)
T PF02239_consen  328 KEVWVSVWDGNGAIVVYDAKTLKEKKRIPV  357 (369)
T ss_dssp             SEEEEEEE--TTEEEEEETTTTEEEEEEE-
T ss_pred             CEEEEEEecCCCEEEEEECCCcEEEEEEEe
Confidence            966444  455 699999876555555543

...

>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3

Probab=99.07  E-value=3.1e-06  Score=74.67  Aligned_cols=250  Identities=17%  Similarity=0.187  Sum_probs=142.4

Q ss_pred             EEEeeCC----CcEEEEeecCCCce--EEEEecCcccCeEEEEeeCCCCCCEEEEEeC----CCeEEEEEcCCC-CceeE
Q 022111           26 LATASSD----SSIKIIGLSNSASQ--HLATLKGHRGPVWQVAWAHPKFGSILASCSY----DGQVIIWKEGNQ-NDWTQ   94 (302)
Q Consensus        26 l~s~~~d----~~v~lw~~~~~~~~--~~~~~~~h~~~v~~v~~~~~~~~~~l~s~s~----D~~i~iwd~~~~-~~~~~   94 (302)
                      ++.|+..    +.|++|+++....+  .+..... ...-..++++++  +++|.++.+    ++.|..|++... ...+.
T Consensus         2 ~~vgsy~~~~~~gI~~~~~d~~~g~l~~~~~~~~-~~~Ps~l~~~~~--~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~   78 (345)
T PF10282_consen    2 LYVGSYTNGKGGGIYVFRFDEETGTLTLVQTVAE-GENPSWLAVSPD--GRRLYVVNEGSGDSGGVSSYRIDPDTGTLTL   78 (345)
T ss_dssp             EEEEECCSSSSTEEEEEEEETTTTEEEEEEEEEE-SSSECCEEE-TT--SSEEEEEETTSSTTTEEEEEEEETTTTEEEE
T ss_pred             EEEEcCCCCCCCcEEEEEEcCCCCCceEeeeecC-CCCCceEEEEeC--CCEEEEEEccccCCCCEEEEEECCCcceeEE
Confidence            4456655    78999998544432  2333221 223345777654  677777765    578999988654 33344


Q ss_pred             EEEecCCCCCeeEEEecCCCCCcEEEEEe-cCCcEEEEEecCCCCeeeeeecccC-----------CCCeEEEEeCCCCC
Q 022111           95 AHTFNDHKSSVNSIAWAPHELGLSLACGS-SDGNISVFTATADGGWDTTRIDQAH-----------PVGVTSVSWAPAMA  162 (302)
Q Consensus        95 ~~~~~~h~~~i~~l~~~pd~~~~~l~sg~-~d~~v~~~~~~~~~~~~~~~~~~~h-----------~~~v~~~~~~~~~~  162 (302)
                      +............++++|+  +.+|+++. .++.+.++++...+..........|           .....++.++|+  
T Consensus        79 ~~~~~~~g~~p~~i~~~~~--g~~l~vany~~g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pd--  154 (345)
T PF10282_consen   79 LNSVPSGGSSPCHIAVDPD--GRFLYVANYGGGSVSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPD--  154 (345)
T ss_dssp             EEEEEESSSCEEEEEECTT--SSEEEEEETTTTEEEEEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TT--
T ss_pred             eeeeccCCCCcEEEEEecC--CCEEEEEEccCCeEEEEEccCCcccceeeeecccCCCCCcccccccccceeEEECCC--
Confidence            4443323334567888888  55666665 5899999999865433221100001           112345566665  


Q ss_pred             CCceeecccCCCceeEEE-eeCCCcEEEEEEecCccccccccccc-cCCCceeEEEeeCCCCCCccEEEEEecCCeEEEE
Q 022111          163 PGALVGLGLLDPVQKLAS-CGCDNTVKVWKMYNGIWKMDCFPALQ-MHSDWVRSVAWAPNLGLPKSTIASASQDGTVVIW  240 (302)
Q Consensus       163 ~~~~~~~~~~~~~~~l~s-~~~D~~v~iwd~~~~~~~~~~~~~~~-~h~~~v~~v~~~p~~~~~~~~l~s~s~D~~i~iw  240 (302)
                                  ++++++ .-....|.+|++......+.....+. .....-+.+.|+|++   ....+....+++|.++
T Consensus       155 ------------g~~v~v~dlG~D~v~~~~~~~~~~~l~~~~~~~~~~G~GPRh~~f~pdg---~~~Yv~~e~s~~v~v~  219 (345)
T PF10282_consen  155 ------------GRFVYVPDLGADRVYVYDIDDDTGKLTPVDSIKVPPGSGPRHLAFSPDG---KYAYVVNELSNTVSVF  219 (345)
T ss_dssp             ------------SSEEEEEETTTTEEEEEEE-TTS-TEEEEEEEECSTTSSEEEEEE-TTS---SEEEEEETTTTEEEEE
T ss_pred             ------------CCEEEEEecCCCEEEEEEEeCCCceEEEeeccccccCCCCcEEEEcCCc---CEEEEecCCCCcEEEE
Confidence                        355444 43345799999976532222112221 223446889999996   2455666778899999


Q ss_pred             EeccCCcceee--e--ee-ccCC--CcEEEEEEccCCCEEEEecCC--ceEEeee-cCCceEEEeee
Q 022111          241 TCAKEGEQWEG--R--VL-KDFK--TPVWSVSWSLTGNLLAVADAN--NVTLWKE-AVDGEWQQVSV  297 (302)
Q Consensus       241 d~~~~~~~~~~--~--~~-~~~~--~~v~~~~~spdg~~la~~~~d--~i~~w~~-~~~~~~~~~~~  297 (302)
                      ++......+..  .  .+ .++.  .....|+++|||++|.++.+.  .|.+++. ...|.+.....
T Consensus       220 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~ispdg~~lyvsnr~~~sI~vf~~d~~~g~l~~~~~  286 (345)
T PF10282_consen  220 DYDPSDGSLTEIQTISTLPEGFTGENAPAEIAISPDGRFLYVSNRGSNSISVFDLDPATGTLTLVQT  286 (345)
T ss_dssp             EEETTTTEEEEEEEEESCETTSCSSSSEEEEEE-TTSSEEEEEECTTTEEEEEEECTTTTTEEEEEE
T ss_pred             eecccCCceeEEEEeeeccccccccCCceeEEEecCCCEEEEEeccCCEEEEEEEecCCCceEEEEE
Confidence            99832221111  1  11 1222  257789999999999887554  7999998 45566655443

1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.

>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]

Probab=99.07  E-value=4.3e-08  Score=82.14  Aligned_cols=249  Identities=13%  Similarity=0.175  Sum_probs=157.6

Q ss_pred             ccccccceeEEEEccCCCEEEEeeCCCcEEEEeecCCCceEEEEec-CcccCeEEEEeeCCCCCCEEEEEeCCCeEEEEE
Q 022111            7 ETGHEDTVHDVAMDFYGKRLATASSDSSIKIIGLSNSASQHLATLK-GHRGPVWQVAWAHPKFGSILASCSYDGQVIIWK   85 (302)
Q Consensus         7 ~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~lw~~~~~~~~~~~~~~-~h~~~v~~v~~~~~~~~~~l~s~s~D~~i~iwd   85 (302)
                      ..||.+.|++...-|-..-+.+.+.|.++|||--.. .++.-..+. --..+++++.|.+.  ..+|+.+-..|++.-+.
T Consensus        20 ~eG~~d~vn~~~l~~~e~gv~~~s~drtvrv~lkrd-s~q~wpsI~~~mP~~~~~~~y~~e--~~~L~vg~~ngtvtefs   96 (404)
T KOG1409|consen   20 IEGSQDDVNAAILIPKEEGVISVSEDRTVRVWLKRD-SGQYWPSIYHYMPSPCSAMEYVSE--SRRLYVGQDNGTVTEFA   96 (404)
T ss_pred             hcCchhhhhhheeccCCCCeEEccccceeeeEEecc-ccccCchhhhhCCCCceEeeeecc--ceEEEEEEecceEEEEE
Confidence            568999999877766666788999999999995321 122111221 12356788888753  56788888888888876


Q ss_pred             cCCC-CceeEEEEecCCCCCeeEEEecCCCCCcEEEEEecCCcEEEEEecCCCCeeeeeecccCCCCeEEEEeCCCCCCC
Q 022111           86 EGNQ-NDWTQAHTFNDHKSSVNSIAWAPHELGLSLACGSSDGNISVFTATADGGWDTTRIDQAHPVGVTSVSWAPAMAPG  164 (302)
Q Consensus        86 ~~~~-~~~~~~~~~~~h~~~i~~l~~~pd~~~~~l~sg~~d~~v~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~  164 (302)
                      +... +.....+.+..|..+|..+.|+..  ...+++.+.|+.+..--.+.+...       +|-.   -..+.... +.
T Consensus        97 ~sedfnkm~~~r~~~~h~~~v~~~if~~~--~e~V~s~~~dk~~~~hc~e~~~~l-------g~Y~---~~~~~t~~-~~  163 (404)
T KOG1409|consen   97 LSEDFNKMTFLKDYLAHQARVSAIVFSLT--HEWVLSTGKDKQFAWHCTESGNRL-------GGYN---FETPASAL-QF  163 (404)
T ss_pred             hhhhhhhcchhhhhhhhhcceeeEEecCC--ceeEEEeccccceEEEeeccCCcc-------cceE---eeccCCCC-ce
Confidence            5321 112234455669999999999754  458899999988764322211110       1100   00000000 00


Q ss_pred             ceeecccCCCceeEEEeeCCCcEEEEEEecCccccccccccccCCCceeEEEeeCCCCCCccEEEEEecCCeEEEEEecc
Q 022111          165 ALVGLGLLDPVQKLASCGCDNTVKVWKMYNGIWKMDCFPALQMHSDWVRSVAWAPNLGLPKSTIASASQDGTVVIWTCAK  244 (302)
Q Consensus       165 ~~~~~~~~~~~~~l~s~~~D~~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~l~s~s~D~~i~iwd~~~  244 (302)
                      +         -.+-..|-..+.|....+...  ....+.++.+|.+.|.+++|.|..    ..+.+|+.|..+.+||+-.
T Consensus       164 d---------~~~~fvGd~~gqvt~lr~~~~--~~~~i~~~~~h~~~~~~l~Wd~~~----~~LfSg~~d~~vi~wdigg  228 (404)
T KOG1409|consen  164 D---------ALYAFVGDHSGQITMLKLEQN--GCQLITTFNGHTGEVTCLKWDPGQ----RLLFSGASDHSVIMWDIGG  228 (404)
T ss_pred             e---------eEEEEecccccceEEEEEeec--CCceEEEEcCcccceEEEEEcCCC----cEEEeccccCceEEEeccC
Confidence            0         012223333445555444322  123456788999999999999863    6799999999999999975


Q ss_pred             CCcceeeeeeccCCCcEEEEEEccCCCEEEEecCC-ceEEeeecC
Q 022111          245 EGEQWEGRVLKDFKTPVWSVSWSLTGNLLAVADAN-NVTLWKEAV  288 (302)
Q Consensus       245 ~~~~~~~~~~~~~~~~v~~~~~spdg~~la~~~~d-~i~~w~~~~  288 (302)
                      .+..  .-.+.++...|..+..-+--++|.+++.| .|.+|+++.
T Consensus       229 ~~g~--~~el~gh~~kV~~l~~~~~t~~l~S~~edg~i~~w~mn~  271 (404)
T KOG1409|consen  229 RKGT--AYELQGHNDKVQALSYAQHTRQLISCGEDGGIVVWNMNV  271 (404)
T ss_pred             Ccce--eeeeccchhhhhhhhhhhhheeeeeccCCCeEEEEeccc
Confidence            4321  23345677778888877777888888888 799999864

>PRK04792 tolB translocation protein TolB; Provisional

Probab=99.06  E-value=2.3e-07  Score=84.63  Aligned_cols=218  Identities=19%  Similarity=0.233  Sum_probs=114.6

Q ss_pred             cEEEEeecCCCceEEEEecCcccCeEEEEeeCCCCCCEEEEEeC-CC--eEEEEEcCCCCceeEEEEecCCCCCeeEEEe
Q 022111           34 SIKIIGLSNSASQHLATLKGHRGPVWQVAWAHPKFGSILASCSY-DG--QVIIWKEGNQNDWTQAHTFNDHKSSVNSIAW  110 (302)
Q Consensus        34 ~v~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~s~-D~--~i~iwd~~~~~~~~~~~~~~~h~~~i~~l~~  110 (302)
                      .+.++|.+....   ..+..+...+...+|+|+  |+.|+..+. ++  .|.+||+.++.. ..+..+   .+.....+|
T Consensus       199 ~l~i~d~dG~~~---~~l~~~~~~~~~p~wSPD--G~~La~~s~~~g~~~L~~~dl~tg~~-~~lt~~---~g~~~~~~w  269 (448)
T PRK04792        199 QLMIADYDGYNE---QMLLRSPEPLMSPAWSPD--GRKLAYVSFENRKAEIFVQDIYTQVR-EKVTSF---PGINGAPRF  269 (448)
T ss_pred             EEEEEeCCCCCc---eEeecCCCcccCceECCC--CCEEEEEEecCCCcEEEEEECCCCCe-EEecCC---CCCcCCeeE
Confidence            455566654322   234455667888999875  787776654 33  477778765432 222222   333457899


Q ss_pred             cCCCCCcEEE-EEecCCc--EEEEEecCCCCeeeeeecccCCCCeEEEEeCCCCCCCceeecccCCCceeE-EEeeCCCc
Q 022111          111 APHELGLSLA-CGSSDGN--ISVFTATADGGWDTTRIDQAHPVGVTSVSWAPAMAPGALVGLGLLDPVQKL-ASCGCDNT  186 (302)
Q Consensus       111 ~pd~~~~~l~-sg~~d~~--v~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~l-~s~~~D~~  186 (302)
                      +||  |..|+ +.+.++.  |.++|+... ..  ..+. .+........|+|++              +.| ++...++.
T Consensus       270 SPD--G~~La~~~~~~g~~~Iy~~dl~tg-~~--~~lt-~~~~~~~~p~wSpDG--------------~~I~f~s~~~g~  329 (448)
T PRK04792        270 SPD--GKKLALVLSKDGQPEIYVVDIATK-AL--TRIT-RHRAIDTEPSWHPDG--------------KSLIFTSERGGK  329 (448)
T ss_pred             CCC--CCEEEEEEeCCCCeEEEEEECCCC-Ce--EECc-cCCCCccceEECCCC--------------CEEEEEECCCCC
Confidence            998  55555 4566676  555555432 21  2222 233345677898864              444 44433444


Q ss_pred             --EEEEEEecCccccccccccccCCCceeEEEeeCCCCCCccEEEEEec-CCeEEEE--EeccCCcceeeeeeccCCCcE
Q 022111          187 --VKVWKMYNGIWKMDCFPALQMHSDWVRSVAWAPNLGLPKSTIASASQ-DGTVVIW--TCAKEGEQWEGRVLKDFKTPV  261 (302)
Q Consensus       187 --v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~l~s~s~-D~~i~iw--d~~~~~~~~~~~~~~~~~~~v  261 (302)
                        |.++|+.++..  ..+ ++.+  ......+|+||+    ++|+..+. ++..+||  |+....  .  ..+... ...
T Consensus       330 ~~Iy~~dl~~g~~--~~L-t~~g--~~~~~~~~SpDG----~~l~~~~~~~g~~~I~~~dl~~g~--~--~~lt~~-~~d  395 (448)
T PRK04792        330 PQIYRVNLASGKV--SRL-TFEG--EQNLGGSITPDG----RSMIMVNRTNGKFNIARQDLETGA--M--QVLTST-RLD  395 (448)
T ss_pred             ceEEEEECCCCCE--EEE-ecCC--CCCcCeeECCCC----CEEEEEEecCCceEEEEEECCCCC--e--EEccCC-CCC
Confidence              55555554421  111 1222  223457899996    45555444 5555555  443321  1  112211 112


Q ss_pred             EEEEEccCCCEEEEecCC--ceEEeeecCCceEEE
Q 022111          262 WSVSWSLTGNLLAVADAN--NVTLWKEAVDGEWQQ  294 (302)
Q Consensus       262 ~~~~~spdg~~la~~~~d--~i~~w~~~~~~~~~~  294 (302)
                      .+.+|+|||++|+.+..+  .-.+|-+..+|.+..
T Consensus       396 ~~ps~spdG~~I~~~~~~~g~~~l~~~~~~G~~~~  430 (448)
T PRK04792        396 ESPSVAPNGTMVIYSTTYQGKQVLAAVSIDGRFKA  430 (448)
T ss_pred             CCceECCCCCEEEEEEecCCceEEEEEECCCCceE
Confidence            245799999998776543  233444434565543

>PRK00178 tolB translocation protein TolB; Provisional

Probab=99.05  E-value=2.3e-07  Score=84.49  Aligned_cols=214  Identities=19%  Similarity=0.265  Sum_probs=117.4

Q ss_pred             EEEEeecCCCceEEEEecCcccCeEEEEeeCCCCCCEEEEEeCC---CeEEEEEcCCCCceeEEEEecCCCCCeeEEEec
Q 022111           35 IKIIGLSNSASQHLATLKGHRGPVWQVAWAHPKFGSILASCSYD---GQVIIWKEGNQNDWTQAHTFNDHKSSVNSIAWA  111 (302)
Q Consensus        35 v~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~s~D---~~i~iwd~~~~~~~~~~~~~~~h~~~i~~l~~~  111 (302)
                      +.++|.+...   ...+..+...+...+|+|+  |+.|+..+.+   ..|.+|++.++..    ..+....+.+...+|+
T Consensus       181 l~~~d~~g~~---~~~l~~~~~~~~~p~wSpD--G~~la~~s~~~~~~~l~~~~l~~g~~----~~l~~~~g~~~~~~~S  251 (430)
T PRK00178        181 LQRSDYDGAR---AVTLLQSREPILSPRWSPD--GKRIAYVSFEQKRPRIFVQNLDTGRR----EQITNFEGLNGAPAWS  251 (430)
T ss_pred             EEEECCCCCC---ceEEecCCCceeeeeECCC--CCEEEEEEcCCCCCEEEEEECCCCCE----EEccCCCCCcCCeEEC
Confidence            5555655432   2334456677889999875  7887766643   3578888866531    2233334455678999


Q ss_pred             CCCCCcEEE-EEecCC--cEEEEEecCCCCeeeeeecccCCCCeEEEEeCCCCCCCceeecccCCCceeEE-EeeCCC--
Q 022111          112 PHELGLSLA-CGSSDG--NISVFTATADGGWDTTRIDQAHPVGVTSVSWAPAMAPGALVGLGLLDPVQKLA-SCGCDN--  185 (302)
Q Consensus       112 pd~~~~~l~-sg~~d~--~v~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~-s~~~D~--  185 (302)
                      ||  |..|+ +.+.++  .|.+||+.... .  ..+. .+........|+|++              +.|+ +...++  
T Consensus       252 pD--G~~la~~~~~~g~~~Iy~~d~~~~~-~--~~lt-~~~~~~~~~~~spDg--------------~~i~f~s~~~g~~  311 (430)
T PRK00178        252 PD--GSKLAFVLSKDGNPEIYVMDLASRQ-L--SRVT-NHPAIDTEPFWGKDG--------------RTLYFTSDRGGKP  311 (430)
T ss_pred             CC--CCEEEEEEccCCCceEEEEECCCCC-e--EEcc-cCCCCcCCeEECCCC--------------CEEEEEECCCCCc
Confidence            98  55565 455555  46666765432 1  2222 233345567888864              4444 433344  


Q ss_pred             cEEEEEEecCccccccccccccCCCceeEEEeeCCCCCCccEEEEEec-CC--eEEEEEeccCCcceeeeeeccCCCcEE
Q 022111          186 TVKVWKMYNGIWKMDCFPALQMHSDWVRSVAWAPNLGLPKSTIASASQ-DG--TVVIWTCAKEGEQWEGRVLKDFKTPVW  262 (302)
Q Consensus       186 ~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~l~s~s~-D~--~i~iwd~~~~~~~~~~~~~~~~~~~v~  262 (302)
                      .|+++|+.++..  ..+ ++.+  ......+|+|++    +.|+..+. ++  .|.++|+.....    ..+... ....
T Consensus       312 ~iy~~d~~~g~~--~~l-t~~~--~~~~~~~~Spdg----~~i~~~~~~~~~~~l~~~dl~tg~~----~~lt~~-~~~~  377 (430)
T PRK00178        312 QIYKVNVNGGRA--ERV-TFVG--NYNARPRLSADG----KTLVMVHRQDGNFHVAAQDLQRGSV----RILTDT-SLDE  377 (430)
T ss_pred             eEEEEECCCCCE--EEe-ecCC--CCccceEECCCC----CEEEEEEccCCceEEEEEECCCCCE----EEccCC-CCCC
Confidence            466666655431  111 1122  223457899996    55665554 33  467777764321    222211 1122


Q ss_pred             EEEEccCCCEEEEecCC--ceEEeeecCCce
Q 022111          263 SVSWSLTGNLLAVADAN--NVTLWKEAVDGE  291 (302)
Q Consensus       263 ~~~~spdg~~la~~~~d--~i~~w~~~~~~~  291 (302)
                      ..+|+|||+.|+.++.+  .-+||-+..+|.
T Consensus       378 ~p~~spdg~~i~~~~~~~g~~~l~~~~~~g~  408 (430)
T PRK00178        378 SPSVAPNGTMLIYATRQQGRGVLMLVSINGR  408 (430)
T ss_pred             CceECCCCCEEEEEEecCCceEEEEEECCCC
Confidence            46899999999887543  234444433444

>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.05  E-value=8.6e-10  Score=100.36  Aligned_cols=218  Identities=19%  Similarity=0.247  Sum_probs=143.9

Q ss_pred             ccccccceeEEEEccCC-CEEEEeeCCCcEEEEeecCCCceEEEEecCcccCeEEEEeeCCCCCCEEEEEeCCCeEEEEE
Q 022111            7 ETGHEDTVHDVAMDFYG-KRLATASSDSSIKIIGLSNSASQHLATLKGHRGPVWQVAWAHPKFGSILASCSYDGQVIIWK   85 (302)
Q Consensus         7 ~~~h~~~v~~~~~s~~~-~~l~s~~~d~~v~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~s~D~~i~iwd   85 (302)
                      +-||..+|+++.|.++. ..||+++.|..|..||+.+.. .++.....-......|+|+- +++..+|+ +..+-|++||
T Consensus       110 lhghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~-~p~ys~~~w~s~asqVkwny-k~p~vlas-shg~~i~vwd  186 (1081)
T KOG0309|consen  110 LHGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSPH-RPFYSTSSWRSAASQVKWNY-KDPNVLAS-SHGNDIFVWD  186 (1081)
T ss_pred             EecCccceeccccCCCCCcceeeccccccceeeeccCCC-cceeeeecccccCceeeecc-cCcchhhh-ccCCceEEEe
Confidence            45899999999999875 699999999999999997654 34555544333456789975 35777766 6667899999


Q ss_pred             cCCCCceeEEEEecCCCCCeeEEEecCCCCCcEEEEEecCCcEEEEEecCCCCeeeeeecccCCCCeEEEEeCCCCCCCc
Q 022111           86 EGNQNDWTQAHTFNDHKSSVNSIAWAPHELGLSLACGSSDGNISVFTATADGGWDTTRIDQAHPVGVTSVSWAPAMAPGA  165 (302)
Q Consensus        86 ~~~~~~~~~~~~~~~h~~~i~~l~~~pd~~~~~l~sg~~d~~v~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~  165 (302)
                      .+.+.  .++..+++|...|+.++|+.-. ...+.+++.|++|+.|+-.+........  ..-..++..-.+-|.+.   
T Consensus       187 ~r~gs--~pl~s~K~~vs~vn~~~fnr~~-~s~~~s~~~d~tvkfw~y~kSt~e~~~~--vtt~~piw~~r~~Pfg~---  258 (1081)
T KOG0309|consen  187 LRKGS--TPLCSLKGHVSSVNSIDFNRFK-YSEIMSSSNDGTVKFWDYSKSTTESKRT--VTTNFPIWRGRYLPFGE---  258 (1081)
T ss_pred             ccCCC--cceEEecccceeeehHHHhhhh-hhhhcccCCCCceeeeccccccccccee--ccccCcceeccccccCc---
Confidence            97664  4677888899999999997542 2368899999999999986543211111  12233455555555432   


Q ss_pred             eeecccCCCceeEEEeeCCCcEEEEEEecCc--c----ccccccccccCCCceeEEEeeCCCC----C--CccEEEEEec
Q 022111          166 LVGLGLLDPVQKLASCGCDNTVKVWKMYNGI--W----KMDCFPALQMHSDWVRSVAWAPNLG----L--PKSTIASASQ  233 (302)
Q Consensus       166 ~~~~~~~~~~~~l~s~~~D~~v~iwd~~~~~--~----~~~~~~~~~~h~~~v~~v~~~p~~~----~--~~~~l~s~s~  233 (302)
                               +..+.-.-.++.+.+++.++..  |    ....+++|.||.+.|...-|--.+.    +  ..-+|+|=|.
T Consensus       259 ---------g~~~mp~~G~n~v~~~~c~n~d~e~n~~~~~~pVh~F~GH~D~V~eFlWR~r~e~~~d~d~rdfQLVTWSk  329 (1081)
T KOG0309|consen  259 ---------GYCIMPMVGGNMVPQLRCENSDLEWNVFDLNTPVHTFVGHDDVVLEFLWRKRKECDGDYDSRDFQLVTWSK  329 (1081)
T ss_pred             ---------eeEeccccCCeeeeeccccchhhhhccccCCcceeeecCcchHHHHHhhhhcccccCCCCccceeEEEeec
Confidence                     1111111112233343332210  0    1245678999999998877743222    1  2347999999


Q ss_pred             CCeEEEEEecc
Q 022111          234 DGTVVIWTCAK  244 (302)
Q Consensus       234 D~~i~iwd~~~  244 (302)
                      |.++|+|-+..
T Consensus       330 D~~lrlWpI~~  340 (1081)
T KOG0309|consen  330 DQTLRLWPIDS  340 (1081)
T ss_pred             CCceEeeeccH
Confidence            99999998754

>PRK04792 tolB translocation protein TolB; Provisional

Probab=99.04  E-value=2.3e-07  Score=84.73  Aligned_cols=216  Identities=17%  Similarity=0.224  Sum_probs=113.9

Q ss_pred             cccceeEEEEccCCCEEEEeeCC-C--cEEEEeecCCCceEEEEecCcccCeEEEEeeCCCCCCEEE-EEeCCCe--EEE
Q 022111           10 HEDTVHDVAMDFYGKRLATASSD-S--SIKIIGLSNSASQHLATLKGHRGPVWQVAWAHPKFGSILA-SCSYDGQ--VII   83 (302)
Q Consensus        10 h~~~v~~~~~s~~~~~l~s~~~d-~--~v~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~-s~s~D~~--i~i   83 (302)
                      +...+....|+|||++|+-.+.+ +  .|.++|+..+..+.+..+.+   .....+|+|+  |+.|+ +.+.++.  |.+
T Consensus       216 ~~~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~~lt~~~g---~~~~~~wSPD--G~~La~~~~~~g~~~Iy~  290 (448)
T PRK04792        216 SPEPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVREKVTSFPG---INGAPRFSPD--GKKLALVLSKDGQPEIYV  290 (448)
T ss_pred             CCCcccCceECCCCCEEEEEEecCCCcEEEEEECCCCCeEEecCCCC---CcCCeeECCC--CCEEEEEEeCCCCeEEEE
Confidence            34456778999999988866543 3  47777776543333333333   3346789864  67554 5566776  555


Q ss_pred             EEcCCCCceeEEEEecCCCCCeeEEEecCCCCCcEEEEEe-cCCcEEEE--EecCCCCeeeeeecccCCCCeEEEEeCCC
Q 022111           84 WKEGNQNDWTQAHTFNDHKSSVNSIAWAPHELGLSLACGS-SDGNISVF--TATADGGWDTTRIDQAHPVGVTSVSWAPA  160 (302)
Q Consensus        84 wd~~~~~~~~~~~~~~~h~~~i~~l~~~pd~~~~~l~sg~-~d~~v~~~--~~~~~~~~~~~~~~~~h~~~v~~~~~~~~  160 (302)
                      +|+.++.    ...+..+........|+||  +..++..+ .++...+|  ++.. +........ +  .......|+|+
T Consensus       291 ~dl~tg~----~~~lt~~~~~~~~p~wSpD--G~~I~f~s~~~g~~~Iy~~dl~~-g~~~~Lt~~-g--~~~~~~~~SpD  360 (448)
T PRK04792        291 VDIATKA----LTRITRHRAIDTEPSWHPD--GKSLIFTSERGGKPQIYRVNLAS-GKVSRLTFE-G--EQNLGGSITPD  360 (448)
T ss_pred             EECCCCC----eEECccCCCCccceEECCC--CCEEEEEECCCCCceEEEEECCC-CCEEEEecC-C--CCCcCeeECCC
Confidence            5665542    3344445556678899998  55555444 34554555  4432 222211111 1  12234678886


Q ss_pred             CCCCceeecccCCCceeEEEee-CCCcEEE--EEEecCccccccccccccCCCceeEEEeeCCCCCCccEEEEEe-cCCe
Q 022111          161 MAPGALVGLGLLDPVQKLASCG-CDNTVKV--WKMYNGIWKMDCFPALQMHSDWVRSVAWAPNLGLPKSTIASAS-QDGT  236 (302)
Q Consensus       161 ~~~~~~~~~~~~~~~~~l~s~~-~D~~v~i--wd~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~l~s~s-~D~~  236 (302)
                      +              +.|+..+ .++..+|  +|+.++..  ..   +... ......+|+||+    +.|+..+ .++.
T Consensus       361 G--------------~~l~~~~~~~g~~~I~~~dl~~g~~--~~---lt~~-~~d~~ps~spdG----~~I~~~~~~~g~  416 (448)
T PRK04792        361 G--------------RSMIMVNRTNGKFNIARQDLETGAM--QV---LTST-RLDESPSVAPNG----TMVIYSTTYQGK  416 (448)
T ss_pred             C--------------CEEEEEEecCCceEEEEEECCCCCe--EE---ccCC-CCCCCceECCCC----CEEEEEEecCCc
Confidence            4              4444443 3444444  56555421  11   1111 122345799996    4454444 4444


Q ss_pred             --EEEEEeccCCcceeeeeeccCCCcEEEEEEcc
Q 022111          237 --VVIWTCAKEGEQWEGRVLKDFKTPVWSVSWSL  268 (302)
Q Consensus       237 --i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp  268 (302)
                        +.+++....   .. ..+....+.+...+|||
T Consensus       417 ~~l~~~~~~G~---~~-~~l~~~~g~~~~p~Wsp  446 (448)
T PRK04792        417 QVLAAVSIDGR---FK-ARLPAGQGEVKSPAWSP  446 (448)
T ss_pred             eEEEEEECCCC---ce-EECcCCCCCcCCCccCC
Confidence              555554321   11 22223334566778887

>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]

Probab=99.03  E-value=2.9e-06  Score=71.93  Aligned_cols=244  Identities=15%  Similarity=0.167  Sum_probs=142.8

Q ss_pred             CCcEEEEeecCCCceE-EEEecCcccCeEEEEeeCCCCCCEEEEEeC---CCeEEEEEcCCC-CceeEEEEecCCCCCee
Q 022111           32 DSSIKIIGLSNSASQH-LATLKGHRGPVWQVAWAHPKFGSILASCSY---DGQVIIWKEGNQ-NDWTQAHTFNDHKSSVN  106 (302)
Q Consensus        32 d~~v~lw~~~~~~~~~-~~~~~~h~~~v~~v~~~~~~~~~~l~s~s~---D~~i~iwd~~~~-~~~~~~~~~~~h~~~i~  106 (302)
                      +.-|++|++.++.++. ...+-.+.+..+-|.|+++  .+.|.++-.   ++.|.-|.+... +..+.+........+-.
T Consensus        15 s~gI~v~~ld~~~g~l~~~~~v~~~~nptyl~~~~~--~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~~~~~g~~p~   92 (346)
T COG2706          15 SQGIYVFNLDTKTGELSLLQLVAELGNPTYLAVNPD--QRHLYVVNEPGEEGGVAAYRIDPDDGRLTFLNRQTLPGSPPC   92 (346)
T ss_pred             CCceEEEEEeCcccccchhhhccccCCCceEEECCC--CCEEEEEEecCCcCcEEEEEEcCCCCeEEEeeccccCCCCCe
Confidence            5779999997544321 2233456677788999764  567777754   577888777542 23333333222333447


Q ss_pred             EEEecCCCCCcEEEEEecC-CcEEEEEecCCCCeeee-eecccCCCCeEEEEeCCCCC--CCceeecccCCCceeEEEe-
Q 022111          107 SIAWAPHELGLSLACGSSD-GNISVFTATADGGWDTT-RIDQAHPVGVTSVSWAPAMA--PGALVGLGLLDPVQKLASC-  181 (302)
Q Consensus       107 ~l~~~pd~~~~~l~sg~~d-~~v~~~~~~~~~~~~~~-~~~~~h~~~v~~~~~~~~~~--~~~~~~~~~~~~~~~l~s~-  181 (302)
                      .++++++  +.+|.++... +.|.++.+...+..... ... .|....      |..+  ..-.+...+++++++|+++ 
T Consensus        93 yvsvd~~--g~~vf~AnY~~g~v~v~p~~~dG~l~~~v~~~-~h~g~~------p~~rQ~~~h~H~a~~tP~~~~l~v~D  163 (346)
T COG2706          93 YVSVDED--GRFVFVANYHSGSVSVYPLQADGSLQPVVQVV-KHTGSG------PHERQESPHVHSANFTPDGRYLVVPD  163 (346)
T ss_pred             EEEECCC--CCEEEEEEccCceEEEEEcccCCccccceeee-ecCCCC------CCccccCCccceeeeCCCCCEEEEee
Confidence            8888877  6677777654 78889988765433221 111 232220      0000  0112223344456777776 


Q ss_pred             -eCCCcEEEEEEecCccccccccccccCCCceeEEEeeCCCCCCccEEEEEecCCeEEEEEeccCCccee-----eeeec
Q 022111          182 -GCDNTVKVWKMYNGIWKMDCFPALQMHSDWVRSVAWAPNLGLPKSTIASASQDGTVVIWTCAKEGEQWE-----GRVLK  255 (302)
Q Consensus       182 -~~D~~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~l~s~s~D~~i~iwd~~~~~~~~~-----~~~~~  255 (302)
                       +.| .|.+|++..+.........+ .-...-+-|.|+|++++   .-+..-.+++|-+|..........     ..+..
T Consensus       164 LG~D-ri~~y~~~dg~L~~~~~~~v-~~G~GPRHi~FHpn~k~---aY~v~EL~stV~v~~y~~~~g~~~~lQ~i~tlP~  238 (346)
T COG2706         164 LGTD-RIFLYDLDDGKLTPADPAEV-KPGAGPRHIVFHPNGKY---AYLVNELNSTVDVLEYNPAVGKFEELQTIDTLPE  238 (346)
T ss_pred             cCCc-eEEEEEcccCcccccccccc-CCCCCcceEEEcCCCcE---EEEEeccCCEEEEEEEcCCCceEEEeeeeccCcc
Confidence             445 49999998764332111112 22334578999999732   234455699999999876422111     11123


Q ss_pred             cCCCc--EEEEEEccCCCEEEEecC--CceEEeeecCCce
Q 022111          256 DFKTP--VWSVSWSLTGNLLAVADA--NNVTLWKEAVDGE  291 (302)
Q Consensus       256 ~~~~~--v~~~~~spdg~~la~~~~--d~i~~w~~~~~~~  291 (302)
                      +|.+.  .-+|..+|||++|.+..+  |.|.++.+..++.
T Consensus       239 dF~g~~~~aaIhis~dGrFLYasNRg~dsI~~f~V~~~~g  278 (346)
T COG2706         239 DFTGTNWAAAIHISPDGRFLYASNRGHDSIAVFSVDPDGG  278 (346)
T ss_pred             ccCCCCceeEEEECCCCCEEEEecCCCCeEEEEEEcCCCC
Confidence            45444  557889999999988866  4799999866544

>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]

Probab=99.00  E-value=8.6e-08  Score=85.46  Aligned_cols=191  Identities=15%  Similarity=0.220  Sum_probs=127.6

Q ss_pred             CCEEEEEeCCCeEEEEEcCCCCceeEEEEecCCCCCeeEEEe------cC----------C--CCCcEEEEEecCCcEEE
Q 022111           69 GSILASCSYDGQVIIWKEGNQNDWTQAHTFNDHKSSVNSIAW------AP----------H--ELGLSLACGSSDGNISV  130 (302)
Q Consensus        69 ~~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~h~~~i~~l~~------~p----------d--~~~~~l~sg~~d~~v~~  130 (302)
                      ..++|....||.+|||+...+...........-.+.-.+..|      +|          .  .....++-|...|.|.+
T Consensus         5 ~~~~A~~~~~g~l~iw~t~~~~~~~e~~p~~~~s~t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~t~~lvlgt~~g~v~~   84 (541)
T KOG4547|consen    5 LDYFALSTGDGRLRIWDTAKNQLQQEFAPIASLSGTCTYTKWGLSADYSPMKWLSLEKAKKASLDTSMLVLGTPQGSVLL   84 (541)
T ss_pred             hheEeecCCCCeEEEEEccCceeeeeeccchhccCcceeEEEEEEeccchHHHHhHHHHhhccCCceEEEeecCCccEEE
Confidence            578999999999999998665321111100001111222222      12          1  01246888888999999


Q ss_pred             EEecCCCCeeeeeecccCCCCeEEEEeCCCCCCCceeecccCCCceeEEEeeCCCcEEEEEEecCccccccccccccCCC
Q 022111          131 FTATADGGWDTTRIDQAHPVGVTSVSWAPAMAPGALVGLGLLDPVQKLASCGCDNTVKVWKMYNGIWKMDCFPALQMHSD  210 (302)
Q Consensus       131 ~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~D~~v~iwd~~~~~~~~~~~~~~~~h~~  210 (302)
                      |+...+ ..........|...|.++.|+...              ..|.|++.|..+..|+.+...    .++.+.+.+.
T Consensus        85 ys~~~g-~it~~~st~~h~~~v~~~~~~~~~--------------~ciyS~~ad~~v~~~~~~~~~----~~~~~~~~~~  145 (541)
T KOG4547|consen   85 YSVAGG-EITAKLSTDKHYGNVNEILDAQRL--------------GCIYSVGADLKVVYILEKEKV----IIRIWKEQKP  145 (541)
T ss_pred             EEecCC-eEEEEEecCCCCCcceeeeccccc--------------CceEecCCceeEEEEecccce----eeeeeccCCC
Confidence            988643 222122224688889998876532              689999999999999998762    3445566677


Q ss_pred             ceeEEEeeCCCCCCccEEEEEecCCeEEEEEeccCCcceeeeeeccCCCcEEEEEEccC-----CCEEEEe-cCC-ceEE
Q 022111          211 WVRSVAWAPNLGLPKSTIASASQDGTVVIWTCAKEGEQWEGRVLKDFKTPVWSVSWSLT-----GNLLAVA-DAN-NVTL  283 (302)
Q Consensus       211 ~v~~v~~~p~~~~~~~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~spd-----g~~la~~-~~d-~i~~  283 (302)
                      .+.+++.+||+    .+++++|  +.|++||+.+..   ......+|.++|..++|-.+     |+++.+. ... .+.+
T Consensus       146 ~~~sl~is~D~----~~l~~as--~~ik~~~~~~ke---vv~~ftgh~s~v~t~~f~~~~~g~~G~~vLssa~~~r~i~~  216 (541)
T KOG4547|consen  146 LVSSLCISPDG----KILLTAS--RQIKVLDIETKE---VVITFTGHGSPVRTLSFTTLIDGIIGKYVLSSAAAERGITV  216 (541)
T ss_pred             ccceEEEcCCC----CEEEecc--ceEEEEEccCce---EEEEecCCCcceEEEEEEEeccccccceeeeccccccceeE
Confidence            78999999995    6777775  569999998642   22345788999999999876     6666544 334 6899


Q ss_pred             eeec
Q 022111          284 WKEA  287 (302)
Q Consensus       284 w~~~  287 (302)
                      |...
T Consensus       217 w~v~  220 (541)
T KOG4547|consen  217 WVVE  220 (541)
T ss_pred             EEEE
Confidence            9863

>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]

Probab=99.00  E-value=2.8e-07  Score=82.27  Aligned_cols=199  Identities=17%  Similarity=0.174  Sum_probs=131.9

Q ss_pred             cCCCEEEEeeCCCcEEEEeecCCCceEEEEecCc-ccCeEEEEee------CC------------CCCCEEEEEeCCCeE
Q 022111           21 FYGKRLATASSDSSIKIIGLSNSASQHLATLKGH-RGPVWQVAWA------HP------------KFGSILASCSYDGQV   81 (302)
Q Consensus        21 ~~~~~l~s~~~d~~v~lw~~~~~~~~~~~~~~~h-~~~v~~v~~~------~~------------~~~~~l~s~s~D~~i   81 (302)
                      +-..++|....||.+|+|+........-..-..| ++...+..|.      |.            .+-..++-|-..|.|
T Consensus         3 ~~~~~~A~~~~~g~l~iw~t~~~~~~~e~~p~~~~s~t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~t~~lvlgt~~g~v   82 (541)
T KOG4547|consen    3 PALDYFALSTGDGRLRIWDTAKNQLQQEFAPIASLSGTCTYTKWGLSADYSPMKWLSLEKAKKASLDTSMLVLGTPQGSV   82 (541)
T ss_pred             chhheEeecCCCCeEEEEEccCceeeeeeccchhccCcceeEEEEEEeccchHHHHhHHHHhhccCCceEEEeecCCccE
Confidence            4457899999999999999864432211111111 2223333331      10            112357778889999


Q ss_pred             EEEEcCCCCceeEEEEecCCCCCeeEEEecCCCCCcEEEEEecCCcEEEEEecCCCCeeeeeecccCCCCeEEEEeCCCC
Q 022111           82 IIWKEGNQNDWTQAHTFNDHKSSVNSIAWAPHELGLSLACGSSDGNISVFTATADGGWDTTRIDQAHPVGVTSVSWAPAM  161 (302)
Q Consensus        82 ~iwd~~~~~~~~~~~~~~~h~~~i~~l~~~pd~~~~~l~sg~~d~~v~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~  161 (302)
                      .+|+...+. .+....-..|.+.|+++.++.+  ..-|.+++.|..+..|+.......   ..-...+..+.+++.+|+ 
T Consensus        83 ~~ys~~~g~-it~~~st~~h~~~v~~~~~~~~--~~ciyS~~ad~~v~~~~~~~~~~~---~~~~~~~~~~~sl~is~D-  155 (541)
T KOG4547|consen   83 LLYSVAGGE-ITAKLSTDKHYGNVNEILDAQR--LGCIYSVGADLKVVYILEKEKVII---RIWKEQKPLVSSLCISPD-  155 (541)
T ss_pred             EEEEecCCe-EEEEEecCCCCCcceeeecccc--cCceEecCCceeEEEEecccceee---eeeccCCCccceEEEcCC-
Confidence            999986652 2222233469999999998765  337999999999999987543222   222244556778888776 


Q ss_pred             CCCceeecccCCCceeEEEeeCCCcEEEEEEecCccccccccccccCCCceeEEEeeCC-CCCCccE-EEEEecCCeEEE
Q 022111          162 APGALVGLGLLDPVQKLASCGCDNTVKVWKMYNGIWKMDCFPALQMHSDWVRSVAWAPN-LGLPKST-IASASQDGTVVI  239 (302)
Q Consensus       162 ~~~~~~~~~~~~~~~~l~s~~~D~~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~~~p~-~~~~~~~-l~s~s~D~~i~i  239 (302)
                                   ++.|++++  +.|++||+.+.    +.+.+|.||.++|++++|..+ .+.-+.+ |.+...+..|.+
T Consensus       156 -------------~~~l~~as--~~ik~~~~~~k----evv~~ftgh~s~v~t~~f~~~~~g~~G~~vLssa~~~r~i~~  216 (541)
T KOG4547|consen  156 -------------GKILLTAS--RQIKVLDIETK----EVVITFTGHGSPVRTLSFTTLIDGIIGKYVLSSAAAERGITV  216 (541)
T ss_pred             -------------CCEEEecc--ceEEEEEccCc----eEEEEecCCCcceEEEEEEEeccccccceeeeccccccceeE
Confidence                         47788876  68999999986    567889999999999999765 1111344 444556778999


Q ss_pred             EEeccC
Q 022111          240 WTCAKE  245 (302)
Q Consensus       240 wd~~~~  245 (302)
                      |-++..
T Consensus       217 w~v~~~  222 (541)
T KOG4547|consen  217 WVVEKE  222 (541)
T ss_pred             EEEEcc
Confidence            988753

>PRK01029 tolB translocation protein TolB; Provisional

Probab=98.98  E-value=4.4e-07  Score=82.26  Aligned_cols=227  Identities=15%  Similarity=0.108  Sum_probs=117.2

Q ss_pred             cEEEEeecCCCceEEEEecCcccCeEEEEeeCCCCCCE--E-EEEeCCCe--EEEEEcCCCCceeEEEEecCCCCCeeEE
Q 022111           34 SIKIIGLSNSASQHLATLKGHRGPVWQVAWAHPKFGSI--L-ASCSYDGQ--VIIWKEGNQNDWTQAHTFNDHKSSVNSI  108 (302)
Q Consensus        34 ~v~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~--l-~s~s~D~~--i~iwd~~~~~~~~~~~~~~~h~~~i~~l  108 (302)
                      .|.+.|.+....   ..+......+..-+|+|+  |+.  + ++...++.  |-+.++..+.. ..+..   ..+.....
T Consensus       166 ~l~~~d~dG~~~---~~lt~~~~~~~sP~wSPD--G~~~~~~y~S~~~g~~~I~~~~l~~g~~-~~lt~---~~g~~~~p  236 (428)
T PRK01029        166 ELWSVDYDGQNL---RPLTQEHSLSITPTWMHI--GSGFPYLYVSYKLGVPKIFLGSLENPAG-KKILA---LQGNQLMP  236 (428)
T ss_pred             eEEEEcCCCCCc---eEcccCCCCcccceEccC--CCceEEEEEEccCCCceEEEEECCCCCc-eEeec---CCCCccce
Confidence            455555544322   234334445667789875  553  3 23334444  45556654422 22322   33444567


Q ss_pred             EecCCCCCcEEEEEec-CC----cEEEEEecCCCCeeeeeecccCCCCeEEEEeCCCCCCCceeecccCCCceeEEEee-
Q 022111          109 AWAPHELGLSLACGSS-DG----NISVFTATADGGWDTTRIDQAHPVGVTSVSWAPAMAPGALVGLGLLDPVQKLASCG-  182 (302)
Q Consensus       109 ~~~pd~~~~~l~sg~~-d~----~v~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~-  182 (302)
                      +|+||  |..|+..+. ++    .+.+|++.....-....+...+........|+|++              +.|+..+ 
T Consensus       237 ~wSPD--G~~Laf~s~~~g~~di~~~~~~~~~g~~g~~~~lt~~~~~~~~~p~wSPDG--------------~~Laf~s~  300 (428)
T PRK01029        237 TFSPR--KKLLAFISDRYGNPDLFIQSFSLETGAIGKPRRLLNEAFGTQGNPSFSPDG--------------TRLVFVSN  300 (428)
T ss_pred             EECCC--CCEEEEEECCCCCcceeEEEeecccCCCCcceEeecCCCCCcCCeEECCCC--------------CEEEEEEC
Confidence            89999  656665543 23    33335544311111112211222233567899874              5555443 


Q ss_pred             CCCcEEEEEEecCccccccccccccCCCceeEEEeeCCCCCCccEEEEEecC---CeEEEEEeccCCcceeeeeeccCCC
Q 022111          183 CDNTVKVWKMYNGIWKMDCFPALQMHSDWVRSVAWAPNLGLPKSTIASASQD---GTVVIWTCAKEGEQWEGRVLKDFKT  259 (302)
Q Consensus       183 ~D~~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~l~s~s~D---~~i~iwd~~~~~~~~~~~~~~~~~~  259 (302)
                      .++..+||.+.-.... .....+..+...+....|+||+    +.|+..+.+   ..|.+||+.....    ..+.....
T Consensus       301 ~~g~~~ly~~~~~~~g-~~~~~lt~~~~~~~~p~wSPDG----~~Laf~~~~~g~~~I~v~dl~~g~~----~~Lt~~~~  371 (428)
T PRK01029        301 KDGRPRIYIMQIDPEG-QSPRLLTKKYRNSSCPAWSPDG----KKIAFCSVIKGVRQICVYDLATGRD----YQLTTSPE  371 (428)
T ss_pred             CCCCceEEEEECcccc-cceEEeccCCCCccceeECCCC----CEEEEEEcCCCCcEEEEEECCCCCe----EEccCCCC
Confidence            5666666654321000 0112233444567789999996    666665543   3688888865421    12222233


Q ss_pred             cEEEEEEccCCCEEEEecCC----ceEEeeecCCceEEEe
Q 022111          260 PVWSVSWSLTGNLLAVADAN----NVTLWKEAVDGEWQQV  295 (302)
Q Consensus       260 ~v~~~~~spdg~~la~~~~d----~i~~w~~~~~~~~~~~  295 (302)
                      .+.+..|+|||+.|+....+    .|.+++.. .+...++
T Consensus       372 ~~~~p~wSpDG~~L~f~~~~~g~~~L~~vdl~-~g~~~~L  410 (428)
T PRK01029        372 NKESPSWAIDSLHLVYSAGNSNESELYLISLI-TKKTRKI  410 (428)
T ss_pred             CccceEECCCCCEEEEEECCCCCceEEEEECC-CCCEEEe
Confidence            46778999999988754322    46677754 3334443

>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]

Probab=98.93  E-value=1.2e-08  Score=100.81  Aligned_cols=218  Identities=17%  Similarity=0.246  Sum_probs=138.4

Q ss_pred             CEEEEeeCCCcEEEEeecCCCceEEEEecCcccCeEEEEeeCCCCCCEEEEEeCCCeEEEEEcCCCCceeEEEEecCCCC
Q 022111           24 KRLATASSDSSIKIIGLSNSASQHLATLKGHRGPVWQVAWAHPKFGSILASCSYDGQVIIWKEGNQNDWTQAHTFNDHKS  103 (302)
Q Consensus        24 ~~l~s~~~d~~v~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~h~~  103 (302)
                      +.+.....+++..-|.....    -..++-|-..|.++. ++|. ..+.+||+.||.+++|....+....+..+ . .+.
T Consensus      2181 ~~~~~~n~~~~~~tq~~~~~----~~~~k~~v~~v~r~~-sHp~-~~~Yltgs~dgsv~~~~w~~~~~v~~~rt-~-g~s 2252 (2439)
T KOG1064|consen 2181 NRFTPSNLPWLGSTQTSRGA----SVMIKHPVENVRRMT-SHPS-DPYYLTGSQDGSVRMFEWGHGQQVVCFRT-A-GNS 2252 (2439)
T ss_pred             ccCCcccCCccccceecccc----eeEeecccCceeeec-CCCC-CceEEecCCCceEEEEeccCCCeEEEeec-c-Ccc
Confidence            34444445555544443221    112333445566665 3454 35677999999999998765543222222 2 238


Q ss_pred             CeeEEEecCCCCCcEEEEEecCCcEEEEEecCCCCeeeeeecccCCCCeEEEEeCCCCCCCceeecccCCCceeEEEe--
Q 022111          104 SVNSIAWAPHELGLSLACGSSDGNISVFTATADGGWDTTRIDQAHPVGVTSVSWAPAMAPGALVGLGLLDPVQKLASC--  181 (302)
Q Consensus       104 ~i~~l~~~pd~~~~~l~sg~~d~~v~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~s~--  181 (302)
                      +|+.+.|+.+  |.....+..||.+.+|...+.   ... -.+.|........|-.                ..++++  
T Consensus      2253 ~vtr~~f~~q--Gnk~~i~d~dg~l~l~q~~pk---~~~-s~qchnk~~~Df~Fi~----------------s~~~tag~ 2310 (2439)
T KOG1064|consen 2253 RVTRSRFNHQ--GNKFGIVDGDGDLSLWQASPK---PYT-SWQCHNKALSDFRFIG----------------SLLATAGR 2310 (2439)
T ss_pred             hhhhhhhccc--CCceeeeccCCceeecccCCc---cee-ccccCCccccceeeee----------------hhhhcccc
Confidence            8999999876  667999999999999987621   111 1134555555555431                234554  


Q ss_pred             -eCCCcEEEEEEecCccccccccccccCCCceeEEEeeCCCCCCccEEEEEecCCeEEEEEeccCCcceeeeeeccCCCc
Q 022111          182 -GCDNTVKVWKMYNGIWKMDCFPALQMHSDWVRSVAWAPNLGLPKSTIASASQDGTVVIWTCAKEGEQWEGRVLKDFKTP  260 (302)
Q Consensus       182 -~~D~~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~~~~~  260 (302)
                       +.++++.+||..-... ..+++  ..|.+.+++++|.|..    +.|+||+.+|.+++||++..+      +...+.  
T Consensus      2311 s~d~~n~~lwDtl~~~~-~s~v~--~~H~~gaT~l~~~P~~----qllisggr~G~v~l~D~rqrq------l~h~~~-- 2375 (2439)
T KOG1064|consen 2311 SSDNRNVCLWDTLLPPM-NSLVH--TCHDGGATVLAYAPKH----QLLISGGRKGEVCLFDIRQRQ------LRHTFQ-- 2375 (2439)
T ss_pred             CCCCCcccchhcccCcc-cceee--eecCCCceEEEEcCcc----eEEEecCCcCcEEEeehHHHH------HHHHhh--
Confidence             3477899999643211 12333  7899999999999985    789999999999999998532      111221  


Q ss_pred             EEEEEEccCCCEEEEecCC-ceEEeeecCCce
Q 022111          261 VWSVSWSLTGNLLAVADAN-NVTLWKEAVDGE  291 (302)
Q Consensus       261 v~~~~~spdg~~la~~~~d-~i~~w~~~~~~~  291 (302)
                      .    +. ...+++.++.. .++||++.+.+-
T Consensus      2376 ~----~~-~~~~f~~~ss~g~ikIw~~s~~~l 2402 (2439)
T KOG1064|consen 2376 A----LD-TREYFVTGSSEGNIKIWRLSEFGL 2402 (2439)
T ss_pred             h----hh-hhheeeccCcccceEEEEccccch
Confidence            1    33 45678888777 799999876543

>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]

Probab=98.91  E-value=5.4e-07  Score=80.10  Aligned_cols=249  Identities=17%  Similarity=0.218  Sum_probs=138.9

Q ss_pred             EEEEccCCCEEEEeeCCCcEEEEeecCCCceEEEEecCcccCeEEEEeeCCCCCCEEEEEeC-----------CCeEEEE
Q 022111           16 DVAMDFYGKRLATASSDSSIKIIGLSNSASQHLATLKGHRGPVWQVAWAHPKFGSILASCSY-----------DGQVIIW   84 (302)
Q Consensus        16 ~~~~s~~~~~l~s~~~d~~v~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~s~-----------D~~i~iw   84 (302)
                      -+.|||-|.+|+|-= -.-|.+|.-..  ...+..+ .|. .|.-+.|||.  .+||+|-|.           ...++||
T Consensus       215 yv~wSP~GTYL~t~H-k~GI~lWGG~~--f~r~~RF-~Hp-~Vq~idfSP~--EkYLVT~s~~p~~~~~~d~e~~~l~IW  287 (698)
T KOG2314|consen  215 YVRWSPKGTYLVTFH-KQGIALWGGES--FDRIQRF-YHP-GVQFIDFSPN--EKYLVTYSPEPIIVEEDDNEGQQLIIW  287 (698)
T ss_pred             eEEecCCceEEEEEe-ccceeeecCcc--HHHHHhc-cCC-CceeeecCCc--cceEEEecCCccccCcccCCCceEEEE
Confidence            378999999999864 44588996432  3334444 466 4788999875  689998764           2679999


Q ss_pred             EcCCCCceeEEEEecCCCCCeeEEEecCCCCCcEEEEEecCCcEEEEEecCCCCeeeeeecccCCCCeEEEEeCCCCCCC
Q 022111           85 KEGNQNDWTQAHTFNDHKSSVNSIAWAPHELGLSLACGSSDGNISVFTATADGGWDTTRIDQAHPVGVTSVSWAPAMAPG  164 (302)
Q Consensus        85 d~~~~~~~~~~~~~~~h~~~i~~l~~~pd~~~~~l~sg~~d~~v~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~  164 (302)
                      |+.++........+......-.-+.||.|  .+++|.... +.|.||+..+   +.+..........|....|+|....-
T Consensus       288 DI~tG~lkrsF~~~~~~~~~WP~frWS~D--dKy~Arm~~-~sisIyEtps---f~lld~Kslki~gIr~FswsP~~~ll  361 (698)
T KOG2314|consen  288 DIATGLLKRSFPVIKSPYLKWPIFRWSHD--DKYFARMTG-NSISIYETPS---FMLLDKKSLKISGIRDFSWSPTSNLL  361 (698)
T ss_pred             EccccchhcceeccCCCccccceEEeccC--CceeEEecc-ceEEEEecCc---eeeecccccCCccccCcccCCCcceE
Confidence            99887432222223222223335578887  567887765 5788887643   22222111223456667777753110


Q ss_pred             c-----------eeecccCC----------------------CceeEEE----------eeCCCcEEEEEEecCcccccc
Q 022111          165 A-----------LVGLGLLD----------------------PVQKLAS----------CGCDNTVKVWKMYNGIWKMDC  201 (302)
Q Consensus       165 ~-----------~~~~~~~~----------------------~~~~l~s----------~~~D~~v~iwd~~~~~~~~~~  201 (302)
                      +           -+++...+                      +|.+|+.          .|.-.++.|+.++...-.+..
T Consensus       362 AYwtpe~~~~parvtL~evPs~~~iRt~nlfnVsDckLhWQk~gdyLcvkvdR~tK~~~~g~f~n~eIfrireKdIpve~  441 (698)
T KOG2314|consen  362 AYWTPETNNIPARVTLMEVPSKREIRTKNLFNVSDCKLHWQKSGDYLCVKVDRHTKSKVKGQFSNLEIFRIREKDIPVEV  441 (698)
T ss_pred             EEEcccccCCcceEEEEecCccceeeeccceeeeccEEEeccCCcEEEEEEEeeccccccceEeeEEEEEeeccCCCcee
Confidence            0           01111000                      1222221          111123334444332111111


Q ss_pred             ccccccCCCceeEEEeeCCCCCCccEEE--EEec-CCeEEEEEeccCCcceeeeeeccC-CCcEEEEEEccCCCEEEEe-
Q 022111          202 FPALQMHSDWVRSVAWAPNLGLPKSTIA--SASQ-DGTVVIWTCAKEGEQWEGRVLKDF-KTPVWSVSWSLTGNLLAVA-  276 (302)
Q Consensus       202 ~~~~~~h~~~v~~v~~~p~~~~~~~~l~--s~s~-D~~i~iwd~~~~~~~~~~~~~~~~-~~~v~~~~~spdg~~la~~-  276 (302)
                          -.-++.|...+|-|.|    +.++  +|-. -.++++|.+..+...+  .+...+ +.....+.|||.|+++++| 
T Consensus       442 ----velke~vi~FaWEP~g----dkF~vi~g~~~k~tvsfY~~e~~~~~~--~lVk~~dk~~~N~vfwsPkG~fvvva~  511 (698)
T KOG2314|consen  442 ----VELKESVIAFAWEPHG----DKFAVISGNTVKNTVSFYAVETNIKKP--SLVKELDKKFANTVFWSPKGRFVVVAA  511 (698)
T ss_pred             ----eecchheeeeeeccCC----CeEEEEEccccccceeEEEeecCCCch--hhhhhhcccccceEEEcCCCcEEEEEE
Confidence                1134668889999986    3333  3332 3479999887533222  222333 2346789999999999887 


Q ss_pred             --cCC-ceEEeeec
Q 022111          277 --DAN-NVTLWKEA  287 (302)
Q Consensus       277 --~~d-~i~~w~~~  287 (302)
                        +.. .+.++|+.
T Consensus       512 l~s~~g~l~F~D~~  525 (698)
T KOG2314|consen  512 LVSRRGDLEFYDTD  525 (698)
T ss_pred             ecccccceEEEecc
Confidence              334 68888864

>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=98.91  E-value=1.1e-08  Score=93.24  Aligned_cols=229  Identities=21%  Similarity=0.303  Sum_probs=144.9

Q ss_pred             ccceeEEEEccCCCEEEEeeCCCcEEEEeecCCCceEEEEecCccc--CeEEEEeeCCC-CCCEEEEEeCCCeEEEEEcC
Q 022111           11 EDTVHDVAMDFYGKRLATASSDSSIKIIGLSNSASQHLATLKGHRG--PVWQVAWAHPK-FGSILASCSYDGQVIIWKEG   87 (302)
Q Consensus        11 ~~~v~~~~~s~~~~~l~s~~~d~~v~lw~~~~~~~~~~~~~~~h~~--~v~~v~~~~~~-~~~~l~s~s~D~~i~iwd~~   87 (302)
                      ...+..+.++|.|+-+|.++.-| +.+.|+..... +..-+. |..  .|-.+.|++.. .+..+++.+. ....+|.+.
T Consensus        24 ~~~~~a~si~p~grdi~lAsr~g-l~i~dld~p~~-ppr~l~-h~tpw~vad~qws~h~a~~~wiVsts~-qkaiiwnlA   99 (1081)
T KOG0309|consen   24 DGGFNAVSINPSGRDIVLASRQG-LYIIDLDDPFT-PPRWLH-HITPWQVADVQWSPHPAKPYWIVSTSN-QKAIIWNLA   99 (1081)
T ss_pred             cCcccceeeccccchhhhhhhcC-eEEEeccCCCC-Cceeee-ccCcchhcceecccCCCCceeEEecCc-chhhhhhhh
Confidence            34566778889898777776554 56667654322 222221 322  24567776521 2335666554 445688875


Q ss_pred             CCCceeEEEEecCCCCCeeEEEecCCCCCcEEEEEecCCcEEEEEecCCCCeeeeeecccCCCCeEEEEeCCCCCCCcee
Q 022111           88 NQNDWTQAHTFNDHKSSVNSIAWAPHELGLSLACGSSDGNISVFTATADGGWDTTRIDQAHPVGVTSVSWAPAMAPGALV  167 (302)
Q Consensus        88 ~~~~~~~~~~~~~h~~~i~~l~~~pd~~~~~l~sg~~d~~v~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~  167 (302)
                      ..........+-+|...|+.+-|+|.. ...+++++.|..+..||++.... .......-| ...+.++|+.-.      
T Consensus       100 ~ss~~aIef~lhghsraitd~n~~~q~-pdVlatcsvdt~vh~wd~rSp~~-p~ys~~~w~-s~asqVkwnyk~------  170 (1081)
T KOG0309|consen  100 KSSSNAIEFVLHGHSRAITDINFNPQH-PDVLATCSVDTYVHAWDMRSPHR-PFYSTSSWR-SAASQVKWNYKD------  170 (1081)
T ss_pred             cCCccceEEEEecCccceeccccCCCC-CcceeeccccccceeeeccCCCc-ceeeeeccc-ccCceeeecccC------
Confidence            433323334566899999999999874 45899999999999999985321 111111112 234567786432      


Q ss_pred             ecccCCCceeEEEeeCCCcEEEEEEecCccccccccccccCCCceeEEEeeCCCCCCccEEEEEecCCeEEEEEeccCCc
Q 022111          168 GLGLLDPVQKLASCGCDNTVKVWKMYNGIWKMDCFPALQMHSDWVRSVAWAPNLGLPKSTIASASQDGTVVIWTCAKEGE  247 (302)
Q Consensus       168 ~~~~~~~~~~l~s~~~D~~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~l~s~s~D~~i~iwd~~~~~~  247 (302)
                              ..+...+..+.|++||++.+.   ..+..+++|...|+.++|+.-.   ...+.+.+.|++++.||......
T Consensus       171 --------p~vlasshg~~i~vwd~r~gs---~pl~s~K~~vs~vn~~~fnr~~---~s~~~s~~~d~tvkfw~y~kSt~  236 (1081)
T KOG0309|consen  171 --------PNVLASSHGNDIFVWDLRKGS---TPLCSLKGHVSSVNSIDFNRFK---YSEIMSSSNDGTVKFWDYSKSTT  236 (1081)
T ss_pred             --------cchhhhccCCceEEEeccCCC---cceEEecccceeeehHHHhhhh---hhhhcccCCCCceeeeccccccc
Confidence                    234455667889999998774   4456778899999999997643   35689999999999999875433


Q ss_pred             ceeeeeeccCCCcEEEEEEcc
Q 022111          248 QWEGRVLKDFKTPVWSVSWSL  268 (302)
Q Consensus       248 ~~~~~~~~~~~~~v~~~~~sp  268 (302)
                      .+...+  .-..+||--.|-|
T Consensus       237 e~~~~v--tt~~piw~~r~~P  255 (1081)
T KOG0309|consen  237 ESKRTV--TTNFPIWRGRYLP  255 (1081)
T ss_pred             ccceec--cccCcceeccccc
Confidence            332222  2234566666655

>KOG3914 consensus WD repeat protein WDR4 [Function unknown]

Probab=98.87  E-value=6.7e-08  Score=82.48  Aligned_cols=156  Identities=15%  Similarity=0.123  Sum_probs=97.7

Q ss_pred             EEEccCCCEEEEeeCCCcEEEEeecCCC--ceEEEEecCcccCeEEEEeeCCC-CCCEEEEEeCCCeEEEEEcCCCCcee
Q 022111           17 VAMDFYGKRLATASSDSSIKIIGLSNSA--SQHLATLKGHRGPVWQVAWAHPK-FGSILASCSYDGQVIIWKEGNQNDWT   93 (302)
Q Consensus        17 ~~~s~~~~~l~s~~~d~~v~lw~~~~~~--~~~~~~~~~h~~~v~~v~~~~~~-~~~~l~s~s~D~~i~iwd~~~~~~~~   93 (302)
                      +..++.++++|.+..++...++++....  .+.+..... ...-+++.|.... ...+.-..+....+.+|.....    
T Consensus        68 ~~~s~~~~llAv~~~~K~~~~f~~~~~~~~~kl~~~~~v-~~~~~ai~~~~~~~sv~v~dkagD~~~~di~s~~~~----  142 (390)
T KOG3914|consen   68 VLTSDSGRLVAVATSSKQRAVFDYRENPKGAKLLDVSCV-PKRPTAISFIREDTSVLVADKAGDVYSFDILSADSG----  142 (390)
T ss_pred             cccCCCceEEEEEeCCCceEEEEEecCCCcceeeeEeec-ccCcceeeeeeccceEEEEeecCCceeeeeeccccc----
Confidence            4456778899988888887777764332  222222211 1112233433221 1122223345555666655432    


Q ss_pred             EEEEecCCCCCeeEEEecCCCCCcEEEEEecCCcEEEEEecCCCCeeeeeecccCCCCeEEEEeCCCCCCCceeecccCC
Q 022111           94 QAHTFNDHKSSVNSIAWAPHELGLSLACGSSDGNISVFTATADGGWDTTRIDQAHPVGVTSVSWAPAMAPGALVGLGLLD  173 (302)
Q Consensus        94 ~~~~~~~h~~~i~~l~~~pd~~~~~l~sg~~d~~v~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~  173 (302)
                      +....-+|-..+..++|+||  ...+++++.|..|++-....  ...+..+-.+|+.-|.+++.-+              
T Consensus       143 ~~~~~lGhvSml~dVavS~D--~~~IitaDRDEkIRvs~ypa--~f~IesfclGH~eFVS~isl~~--------------  204 (390)
T KOG3914|consen  143 RCEPILGHVSMLLDVAVSPD--DQFIITADRDEKIRVSRYPA--TFVIESFCLGHKEFVSTISLTD--------------  204 (390)
T ss_pred             CcchhhhhhhhhheeeecCC--CCEEEEecCCceEEEEecCc--ccchhhhccccHhheeeeeecc--------------
Confidence            22334579999999999999  46999999999999843321  2222223347888888887654              


Q ss_pred             CceeEEEeeCCCcEEEEEEecCc
Q 022111          174 PVQKLASCGCDNTVKVWKMYNGI  196 (302)
Q Consensus       174 ~~~~l~s~~~D~~v~iwd~~~~~  196 (302)
                       +..|+|+|.|++|++||+.++.
T Consensus       205 -~~~LlS~sGD~tlr~Wd~~sgk  226 (390)
T KOG3914|consen  205 -NYLLLSGSGDKTLRLWDITSGK  226 (390)
T ss_pred             -CceeeecCCCCcEEEEecccCC
Confidence             3568999999999999999873

>PLN02919 haloacid dehalogenase-like hydrolase family protein

Probab=98.85  E-value=8.7e-06  Score=81.45  Aligned_cols=247  Identities=10%  Similarity=0.059  Sum_probs=138.9

Q ss_pred             EEEEccC-CCEEEEeeCCCcEEEEeecCCCceEEEEecC--c------------ccCeEEEEeeCCCCCC-EEEEEeCCC
Q 022111           16 DVAMDFY-GKRLATASSDSSIKIIGLSNSASQHLATLKG--H------------RGPVWQVAWAHPKFGS-ILASCSYDG   79 (302)
Q Consensus        16 ~~~~s~~-~~~l~s~~~d~~v~lw~~~~~~~~~~~~~~~--h------------~~~v~~v~~~~~~~~~-~l~s~s~D~   79 (302)
                      .++++++ ++.+++-...+.|+++|....   .+..+.+  .            -..-..|++.++  ++ ++++-...+
T Consensus       572 gvavd~~~g~lyVaDs~n~rI~v~d~~G~---~i~~ig~~g~~G~~dG~~~~a~f~~P~GIavd~~--gn~LYVaDt~n~  646 (1057)
T PLN02919        572 KLAIDLLNNRLFISDSNHNRIVVTDLDGN---FIVQIGSTGEEGLRDGSFEDATFNRPQGLAYNAK--KNLLYVADTENH  646 (1057)
T ss_pred             eEEEECCCCeEEEEECCCCeEEEEeCCCC---EEEEEccCCCcCCCCCchhccccCCCcEEEEeCC--CCEEEEEeCCCc
Confidence            5677764 556666667788999987542   2222221  1            112356777653  44 445555667


Q ss_pred             eEEEEEcCCCCceeEEEEecC----------C-------CCCeeEEEecCCCCCcEEEEEecCCcEEEEEecCCCCeeee
Q 022111           80 QVIIWKEGNQNDWTQAHTFND----------H-------KSSVNSIAWAPHELGLSLACGSSDGNISVFTATADGGWDTT  142 (302)
Q Consensus        80 ~i~iwd~~~~~~~~~~~~~~~----------h-------~~~i~~l~~~pd~~~~~l~sg~~d~~v~~~~~~~~~~~~~~  142 (302)
                      .|+.+|..++.    +.++.+          .       -.....++++|+. +.++++.+.++.|++|+..... ....
T Consensus       647 ~Ir~id~~~~~----V~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~-g~LyVad~~~~~I~v~d~~~g~-v~~~  720 (1057)
T PLN02919        647 ALREIDFVNET----VRTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVN-EKVYIAMAGQHQIWEYNISDGV-TRVF  720 (1057)
T ss_pred             eEEEEecCCCE----EEEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCC-CeEEEEECCCCeEEEEECCCCe-EEEE
Confidence            89999876542    222211          0       1123578999853 5677777888899999875321 1100


Q ss_pred             eec------ccC------CCCeEEEEeCCCCCCCceeecccCCCceeEEEeeCCCcEEEEEEecCccccc---------c
Q 022111          143 RID------QAH------PVGVTSVSWAPAMAPGALVGLGLLDPVQKLASCGCDNTVKVWKMYNGIWKMD---------C  201 (302)
Q Consensus       143 ~~~------~~h------~~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~D~~v~iwd~~~~~~~~~---------~  201 (302)
                      .-.      .++      ......++++|++             +..+++-+.++.|++||+.++.....         .
T Consensus       721 ~G~G~~~~~~g~~~~~~~~~~P~GIavspdG-------------~~LYVADs~n~~Irv~D~~tg~~~~~~gg~~~~~~~  787 (1057)
T PLN02919        721 SGDGYERNLNGSSGTSTSFAQPSGISLSPDL-------------KELYIADSESSSIRALDLKTGGSRLLAGGDPTFSDN  787 (1057)
T ss_pred             ecCCccccCCCCccccccccCccEEEEeCCC-------------CEEEEEECCCCeEEEEECCCCcEEEEEecccccCcc
Confidence            000      000      0112334454432             23667777889999999876421100         0


Q ss_pred             ccccccC--------CCceeEEEeeCCCCCCccEEEEEecCCeEEEEEeccCCcceeeee----------eccCCCcEEE
Q 022111          202 FPALQMH--------SDWVRSVAWAPNLGLPKSTIASASQDGTVVIWTCAKEGEQWEGRV----------LKDFKTPVWS  263 (302)
Q Consensus       202 ~~~~~~h--------~~~v~~v~~~p~~~~~~~~l~s~s~D~~i~iwd~~~~~~~~~~~~----------~~~~~~~v~~  263 (302)
                      ...+..+        -..-..++++|++    +.+++-+.++.|++||............          ....-.....
T Consensus       788 l~~fG~~dG~g~~~~l~~P~Gvavd~dG----~LYVADs~N~rIrviD~~tg~v~tiaG~G~~G~~dG~~~~a~l~~P~G  863 (1057)
T PLN02919        788 LFKFGDHDGVGSEVLLQHPLGVLCAKDG----QIYVADSYNHKIKKLDPATKRVTTLAGTGKAGFKDGKALKAQLSEPAG  863 (1057)
T ss_pred             cccccCCCCchhhhhccCCceeeEeCCC----cEEEEECCCCEEEEEECCCCeEEEEeccCCcCCCCCcccccccCCceE
Confidence            0011101        0123578888885    6788889999999999864311000000          0001124678


Q ss_pred             EEEccCCCEEEEecCC-ceEEeeecCCc
Q 022111          264 VSWSLTGNLLAVADAN-NVTLWKEAVDG  290 (302)
Q Consensus       264 ~~~spdg~~la~~~~d-~i~~w~~~~~~  290 (302)
                      |+++++|+++++-..+ .|++|+.....
T Consensus       864 Iavd~dG~lyVaDt~Nn~Irvid~~~~~  891 (1057)
T PLN02919        864 LALGENGRLFVADTNNSLIRYLDLNKGE  891 (1057)
T ss_pred             EEEeCCCCEEEEECCCCEEEEEECCCCc
Confidence            9999999977766666 69999986543

>KOG2041 consensus WD40 repeat protein [General function prediction only]

Probab=98.84  E-value=1.8e-07  Score=85.38  Aligned_cols=241  Identities=18%  Similarity=0.341  Sum_probs=151.9

Q ss_pred             cccceeEEEEccCCCEEEEeeCCCcEEEEeecCCCc-------------eEEEEecCcccCeEEEEeeCCCCCCEEEEEe
Q 022111           10 HEDTVHDVAMDFYGKRLATASSDSSIKIIGLSNSAS-------------QHLATLKGHRGPVWQVAWAHPKFGSILASCS   76 (302)
Q Consensus        10 h~~~v~~~~~s~~~~~l~s~~~d~~v~lw~~~~~~~-------------~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~s   76 (302)
                      ......++.|+....++|.||.||.+++..+.+.+.             ..-+++.||.+.|.-+.|+..  ...|-|..
T Consensus        13 nnvkL~c~~WNke~gyIAcgG~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeGH~~sV~vvTWNe~--~QKLTtSD   90 (1189)
T KOG2041|consen   13 NNVKLHCAEWNKESGYIACGGADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEGHNASVMVVTWNEN--NQKLTTSD   90 (1189)
T ss_pred             CCceEEEEEEcccCCeEEeccccceeEEEEccccCCcccccccccccccchhhhhccCcceEEEEEeccc--cccccccC
Confidence            445678899999889999999999999998753221             112467899999999999743  46788888


Q ss_pred             CCCeEEEEEcCCCCceeEEEEecC-CCCCeeEEEecCCCCCcEEEEEecCCcEEEEEecCCCCeeeeeecccCCCCeEEE
Q 022111           77 YDGQVIIWKEGNQNDWTQAHTFND-HKSSVNSIAWAPHELGLSLACGSSDGNISVFTATADGGWDTTRIDQAHPVGVTSV  155 (302)
Q Consensus        77 ~D~~i~iwd~~~~~~~~~~~~~~~-h~~~i~~l~~~pd~~~~~l~sg~~d~~v~~~~~~~~~~~~~~~~~~~h~~~v~~~  155 (302)
                      .+|.|.+|-+-.+ .|. -..++. .+..|.+++|+.|  |..++..-.||.|.+=.+....-|. ..+.   ......+
T Consensus        91 t~GlIiVWmlykg-sW~-EEMiNnRnKSvV~SmsWn~d--G~kIcIvYeDGavIVGsvdGNRIwg-KeLk---g~~l~hv  162 (1189)
T KOG2041|consen   91 TSGLIIVWMLYKG-SWC-EEMINNRNKSVVVSMSWNLD--GTKICIVYEDGAVIVGSVDGNRIWG-KELK---GQLLAHV  162 (1189)
T ss_pred             CCceEEEEeeecc-cHH-HHHhhCcCccEEEEEEEcCC--CcEEEEEEccCCEEEEeeccceecc-hhcc---hheccce
Confidence            9999999987543 231 122222 4567889999987  7788888888888774443111111 1121   1224577


Q ss_pred             EeCCCCCCCceeecccCCCceeEEEeeCCCcEEEEEEecCc---cccccc----cccccCCCceeEEEeeCC--CC--CC
Q 022111          156 SWAPAMAPGALVGLGLLDPVQKLASCGCDNTVKVWKMYNGI---WKMDCF----PALQMHSDWVRSVAWAPN--LG--LP  224 (302)
Q Consensus       156 ~~~~~~~~~~~~~~~~~~~~~~l~s~~~D~~v~iwd~~~~~---~~~~~~----~~~~~h~~~v~~v~~~p~--~~--~~  224 (302)
                      .|+++.              ++++-+-..|.+.++|.....   ...+|.    ..++.....|..+.|...  +.  .+
T Consensus       163 ~ws~D~--------------~~~Lf~~ange~hlydnqgnF~~Kl~~~c~Vn~tg~~s~~~~kia~i~w~~g~~~~v~pd  228 (1189)
T KOG2041|consen  163 LWSEDL--------------EQALFKKANGETHLYDNQGNFERKLEKDCEVNGTGIFSNFPTKIAEIEWNTGPYQPVPPD  228 (1189)
T ss_pred             eecccH--------------HHHHhhhcCCcEEEecccccHHHhhhhceEEeeeeeecCCCccccceeeccCccccCCCC
Confidence            898864              444555556888999865431   011121    111212223677777521  10  12


Q ss_pred             ccEEEEEecCCeEEEEEeccCCcceeeeeeccCCCcEEEEEEccCCCEEEEecC
Q 022111          225 KSTIASASQDGTVVIWTCAKEGEQWEGRVLKDFKTPVWSVSWSLTGNLLAVADA  278 (302)
Q Consensus       225 ~~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~la~~~~  278 (302)
                      .-.|+.+=..|.+.|-  +.+.++-. . +.+-.-.+....|+++|..||+++-
T Consensus       229 rP~lavcy~nGr~QiM--R~eND~~P-v-v~dtgm~~vgakWnh~G~vLAvcG~  278 (1189)
T KOG2041|consen  229 RPRLAVCYANGRMQIM--RSENDPEP-V-VVDTGMKIVGAKWNHNGAVLAVCGN  278 (1189)
T ss_pred             CCEEEEEEcCceehhh--hhcCCCCC-e-EEecccEeecceecCCCcEEEEccC
Confidence            3568888788888774  33332211 1 2233356888999999999999854

>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation []

Probab=98.83  E-value=4.7e-06  Score=81.98  Aligned_cols=253  Identities=16%  Similarity=0.278  Sum_probs=148.4

Q ss_pred             cccceeEEEEccCCCEEEEeeCCCcEEEEeecC-------------CCceE--------EEEecC---------------
Q 022111           10 HEDTVHDVAMDFYGKRLATASSDSSIKIIGLSN-------------SASQH--------LATLKG---------------   53 (302)
Q Consensus        10 h~~~v~~~~~s~~~~~l~s~~~d~~v~lw~~~~-------------~~~~~--------~~~~~~---------------   53 (302)
                      -...|.+++||||++.||....++++.+...+-             +..++        -.+|.|               
T Consensus       119 vd~GI~a~~WSPD~Ella~vT~~~~l~~mt~~fd~i~E~~l~~~~~~~~~~VsVGWGkKeTQF~Gs~gK~aa~~~~~p~~  198 (928)
T PF04762_consen  119 VDSGILAASWSPDEELLALVTGEGNLLLMTRDFDPISEVPLDSDDFGESKHVSVGWGKKETQFHGSAGKAAARQLRDPTV  198 (928)
T ss_pred             EcCcEEEEEECCCcCEEEEEeCCCEEEEEeccceEEEEeecCccccCCCceeeeccCcccCccCcchhhhhhhhccCCCC
Confidence            346789999999999999988888888764310             00000        011111               


Q ss_pred             ---------cccCeEEEEeeCCCCCCEEEEEeC----C--CeEEEEEcCCCCceeEEEEecCCCCCeeEEEecCCCCCcE
Q 022111           54 ---------HRGPVWQVAWAHPKFGSILASCSY----D--GQVIIWKEGNQNDWTQAHTFNDHKSSVNSIAWAPHELGLS  118 (302)
Q Consensus        54 ---------h~~~v~~v~~~~~~~~~~l~s~s~----D--~~i~iwd~~~~~~~~~~~~~~~h~~~i~~l~~~pd~~~~~  118 (302)
                               +...-..|+|..  ||.++|..+.    +  +.+|+|+-+ +   ....+-..-.+--.+++|.|.  |.+
T Consensus       199 ~~~d~~~~s~dd~~~~ISWRG--DG~yFAVss~~~~~~~~R~iRVy~Re-G---~L~stSE~v~gLe~~l~WrPs--G~l  270 (928)
T PF04762_consen  199 PKVDEGKLSWDDGRVRISWRG--DGEYFAVSSVEPETGSRRVIRVYSRE-G---ELQSTSEPVDGLEGALSWRPS--GNL  270 (928)
T ss_pred             CccccCccccCCCceEEEECC--CCcEEEEEEEEcCCCceeEEEEECCC-c---eEEeccccCCCccCCccCCCC--CCE
Confidence                     222334688864  4899887664    2  679999754 2   122222222334467899997  667


Q ss_pred             EEEEec---CCcEEEEEecCCCCeeee--eecc-cCCCCeEEEEeCCCCCCCceeecccCCCceeEEEeeCCCcEEEEEE
Q 022111          119 LACGSS---DGNISVFTATADGGWDTT--RIDQ-AHPVGVTSVSWAPAMAPGALVGLGLLDPVQKLASCGCDNTVKVWKM  192 (302)
Q Consensus       119 l~sg~~---d~~v~~~~~~~~~~~~~~--~~~~-~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~D~~v~iwd~  192 (302)
                      +|+.-.   ...|.+|.-+  | ....  .++. .....|..+.|+++.              ..||..-.|. |.+|-.
T Consensus       271 IA~~q~~~~~~~VvFfErN--G-LrhgeF~l~~~~~~~~v~~l~Wn~ds--------------~iLAv~~~~~-vqLWt~  332 (928)
T PF04762_consen  271 IASSQRLPDRHDVVFFERN--G-LRHGEFTLRFDPEEEKVIELAWNSDS--------------EILAVWLEDR-VQLWTR  332 (928)
T ss_pred             EEEEEEcCCCcEEEEEecC--C-cEeeeEecCCCCCCceeeEEEECCCC--------------CEEEEEecCC-ceEEEe
Confidence            777654   2455566432  1 1111  1111 234568999999864              6777766555 999998


Q ss_pred             ecCccccccccccccCCCceeEEEeeCCCCCCccEEEEEecCCeEEEEEecc----CC-----cceeee-------ee--
Q 022111          193 YNGIWKMDCFPALQMHSDWVRSVAWAPNLGLPKSTIASASQDGTVVIWTCAK----EG-----EQWEGR-------VL--  254 (302)
Q Consensus       193 ~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~l~s~s~D~~i~iwd~~~----~~-----~~~~~~-------~~--  254 (302)
                      .+-.|=++....+.. ...+..+.|+|..   +..|...+.++.+..++..-    ..     +.-...       .+  
T Consensus       333 ~NYHWYLKqei~~~~-~~~~~~~~Wdpe~---p~~L~v~t~~g~~~~~~~~~~v~~s~~~~~~D~g~vaVIDG~~lllTp  408 (928)
T PF04762_consen  333 SNYHWYLKQEIRFSS-SESVNFVKWDPEK---PLRLHVLTSNGQYEIYDFAWDVSRSPGSSPNDNGTVAVIDGNKLLLTP  408 (928)
T ss_pred             eCCEEEEEEEEEccC-CCCCCceEECCCC---CCEEEEEecCCcEEEEEEEEEEEecCCCCccCceEEEEEeCCeEEEec
Confidence            776654433222222 2234559999974   46677777767665555421    10     000000       00  


Q ss_pred             --------------ccCCCcEEEEEEccCCCEEEEecCC-ceEEeeecCCceE
Q 022111          255 --------------KDFKTPVWSVSWSLTGNLLAVADAN-NVTLWKEAVDGEW  292 (302)
Q Consensus       255 --------------~~~~~~v~~~~~spdg~~la~~~~d-~i~~w~~~~~~~~  292 (302)
                                    -.+..+|..++|++++..+++-..| .+.+|.......|
T Consensus       409 f~~a~VPPPMs~~~l~~~~~v~~vaf~~~~~~~avl~~d~~l~~~~~~~~~~~  461 (928)
T PF04762_consen  409 FRRAVVPPPMSSYELELPSPVNDVAFSPSNSRFAVLTSDGSLSIYEWDLKNMW  461 (928)
T ss_pred             ccccCCCchHhceEEcCCCCcEEEEEeCCCCeEEEEECCCCEEEEEecCCCcc
Confidence                          1234679999999998877777777 5999885444333

>KOG3914 consensus WD repeat protein WDR4 [Function unknown]

Probab=98.80  E-value=2.3e-07  Score=79.28  Aligned_cols=152  Identities=14%  Similarity=0.162  Sum_probs=94.2

Q ss_pred             CCCEEEEEeCCCeEEEEEcCCCCc-eeEEEEecCCCCCeeEEEecCCCCCcEEEEEecCCcEEEEEecCCCCeeeeeecc
Q 022111           68 FGSILASCSYDGQVIIWKEGNQND-WTQAHTFNDHKSSVNSIAWAPHELGLSLACGSSDGNISVFTATADGGWDTTRIDQ  146 (302)
Q Consensus        68 ~~~~l~s~s~D~~i~iwd~~~~~~-~~~~~~~~~h~~~i~~l~~~pd~~~~~l~sg~~d~~v~~~~~~~~~~~~~~~~~~  146 (302)
                      .+++||.+-.++...+++...... .+....+.. ...-+++.|..++.  .+..+...|-++.+|.-....+.... ..
T Consensus        73 ~~~llAv~~~~K~~~~f~~~~~~~~~kl~~~~~v-~~~~~ai~~~~~~~--sv~v~dkagD~~~~di~s~~~~~~~~-~l  148 (390)
T KOG3914|consen   73 SGRLVAVATSSKQRAVFDYRENPKGAKLLDVSCV-PKRPTAISFIREDT--SVLVADKAGDVYSFDILSADSGRCEP-IL  148 (390)
T ss_pred             CceEEEEEeCCCceEEEEEecCCCcceeeeEeec-ccCcceeeeeeccc--eEEEEeecCCceeeeeecccccCcch-hh
Confidence            477888887788877777654432 233333222 12234444444322  23333333333333332111112122 23


Q ss_pred             cCCCCeEEEEeCCCCCCCceeecccCCCceeEEEeeCCCcEEEEEEecCccccccccc-cccCCCceeEEEeeCCCCCCc
Q 022111          147 AHPVGVTSVSWAPAMAPGALVGLGLLDPVQKLASCGCDNTVKVWKMYNGIWKMDCFPA-LQMHSDWVRSVAWAPNLGLPK  225 (302)
Q Consensus       147 ~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~D~~v~iwd~~~~~~~~~~~~~-~~~h~~~v~~v~~~p~~~~~~  225 (302)
                      +|..-++.++|+|+.              ++|+++-.|..|||-.....    -.+.. +-||+.+|..++.-++     
T Consensus       149 GhvSml~dVavS~D~--------------~~IitaDRDEkIRvs~ypa~----f~IesfclGH~eFVS~isl~~~-----  205 (390)
T KOG3914|consen  149 GHVSMLLDVAVSPDD--------------QFIITADRDEKIRVSRYPAT----FVIESFCLGHKEFVSTISLTDN-----  205 (390)
T ss_pred             hhhhhhheeeecCCC--------------CEEEEecCCceEEEEecCcc----cchhhhccccHhheeeeeeccC-----
Confidence            788888999999864              89999999999999665432    11222 3589999999999876     


Q ss_pred             cEEEEEecCCeEEEEEeccCC
Q 022111          226 STIASASQDGTVVIWTCAKEG  246 (302)
Q Consensus       226 ~~l~s~s~D~~i~iwd~~~~~  246 (302)
                      ..|+|+|.|++||+||+.+..
T Consensus       206 ~~LlS~sGD~tlr~Wd~~sgk  226 (390)
T KOG3914|consen  206 YLLLSGSGDKTLRLWDITSGK  226 (390)
T ss_pred             ceeeecCCCCcEEEEecccCC
Confidence            569999999999999998753

>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide

Probab=98.79  E-value=1.5e-08  Score=59.03  Aligned_cols=37  Identities=38%  Similarity=0.808  Sum_probs=33.7

Q ss_pred             cccccccCCCceeEEEeeCCCCCCccEEEEEecCCeEEEEE
Q 022111          201 CFPALQMHSDWVRSVAWAPNLGLPKSTIASASQDGTVVIWT  241 (302)
Q Consensus       201 ~~~~~~~h~~~v~~v~~~p~~~~~~~~l~s~s~D~~i~iwd  241 (302)
                      ++.++.+|.+.|++|+|+|++    .+|++++.|+.|++||
T Consensus         3 ~~~~~~~h~~~i~~i~~~~~~----~~~~s~~~D~~i~vwd   39 (39)
T PF00400_consen    3 CVRTFRGHSSSINSIAWSPDG----NFLASGSSDGTIRVWD   39 (39)
T ss_dssp             EEEEEESSSSSEEEEEEETTS----SEEEEEETTSEEEEEE
T ss_pred             EEEEEcCCCCcEEEEEEeccc----ccceeeCCCCEEEEEC
Confidence            456788999999999999994    8899999999999997

WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....

>KOG4190 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.79  E-value=2.2e-08  Score=88.78  Aligned_cols=206  Identities=17%  Similarity=0.274  Sum_probs=125.3

Q ss_pred             ccccccceeEEEEccCCCEEEEeeCCCcEEEEeecCC-----CceEEEEecCcccCeEEEEeeCCCCCCEEEEEeCCCeE
Q 022111            7 ETGHEDTVHDVAMDFYGKRLATASSDSSIKIIGLSNS-----ASQHLATLKGHRGPVWQVAWAHPKFGSILASCSYDGQV   81 (302)
Q Consensus         7 ~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~lw~~~~~-----~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~s~D~~i   81 (302)
                      +.||+..|..++--.+.+-+++++.|++|++|.+..+     +..+-.+...|+.+|.++.|-.+  -+++++  -|+-|
T Consensus       731 f~GH~~~iRai~AidNENSFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL~~--lr~i~S--cD~gi  806 (1034)
T KOG4190|consen  731 FTGHQEKIRAIAAIDNENSFISASKDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFLAD--LRSIAS--CDGGI  806 (1034)
T ss_pred             ccCcHHHhHHHHhcccccceeeccCCceEEEEEeccccCccccceeeeEhhhccCcccceeeeec--cceeee--ccCcc
Confidence            6699998888765445667889999999999998532     22355677899999999999753  355654  58899


Q ss_pred             EEEEcCCCCceeEEEE--ecCCCCCeeEEEecCCCCCcEEEEEecCCcEEEEEecCCCCeee-eee-c-ccCCCCeEEEE
Q 022111           82 IIWKEGNQNDWTQAHT--FNDHKSSVNSIAWAPHELGLSLACGSSDGNISVFTATADGGWDT-TRI-D-QAHPVGVTSVS  156 (302)
Q Consensus        82 ~iwd~~~~~~~~~~~~--~~~h~~~i~~l~~~pd~~~~~l~sg~~d~~v~~~~~~~~~~~~~-~~~-~-~~h~~~v~~~~  156 (302)
                      .+||.--+.....+.-  -.+..+.|.|+.- -+ ....+|.|+...+|+++|.+... |.. ..+ . .+....+++++
T Consensus       807 HlWDPFigr~Laq~~dapk~~a~~~ikcl~n-v~-~~iliAgcsaeSTVKl~DaRsce-~~~E~kVcna~~Pna~~R~ia  883 (1034)
T KOG4190|consen  807 HLWDPFIGRLLAQMEDAPKEGAGGNIKCLEN-VD-RHILIAGCSAESTVKLFDARSCE-WTCELKVCNAPGPNALTRAIA  883 (1034)
T ss_pred             eeecccccchhHhhhcCcccCCCceeEeccc-Cc-chheeeeccchhhheeeeccccc-ceeeEEeccCCCCchheeEEE
Confidence            9999743321111111  1122345565531 12 23456666889999999987432 221 111 0 01223455555


Q ss_pred             eCCCCCCCceeecccCCCceeEEEeeCCCcEEEEEEecCccccccccccccCCCceeEEEeeCCCCCCccEEEEEecCCe
Q 022111          157 WAPAMAPGALVGLGLLDPVQKLASCGCDNTVKVWKMYNGIWKMDCFPALQMHSDWVRSVAWAPNLGLPKSTIASASQDGT  236 (302)
Q Consensus       157 ~~~~~~~~~~~~~~~~~~~~~l~s~~~D~~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~l~s~s~D~~  236 (302)
                      ..+.              |..++.+-..|.|-+.|.+++.    .+......+.....++ .|.    .+.++....|.+
T Consensus       884 Va~~--------------GN~lAa~LSnGci~~LDaR~G~----vINswrpmecdllqla-aps----dq~L~~saldHs  940 (1034)
T KOG4190|consen  884 VADK--------------GNKLAAALSNGCIAILDARNGK----VINSWRPMECDLLQLA-APS----DQALAQSALDHS  940 (1034)
T ss_pred             eccC--------------cchhhHHhcCCcEEEEecCCCc----eeccCCcccchhhhhc-Cch----hHHHHhhcccce
Confidence            4443              5778888888999999998873    2222222221122222 122    256777888888


Q ss_pred             EEE-EEe
Q 022111          237 VVI-WTC  242 (302)
Q Consensus       237 i~i-wd~  242 (302)
                      +.+ |..
T Consensus       941 laVnWha  947 (1034)
T KOG4190|consen  941 LAVNWHA  947 (1034)
T ss_pred             eEeeehh
Confidence            888 754

>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]

Probab=98.76  E-value=4.4e-06  Score=68.18  Aligned_cols=202  Identities=16%  Similarity=0.105  Sum_probs=122.1

Q ss_pred             CEEEEEeCCCeEEEEEcCCCCceeEEEEecCCCCCeeEEEecCCCCCcEEEEEecCCcEEEEEecCCCCeeeeeecccCC
Q 022111           70 SILASCSYDGQVIIWKEGNQNDWTQAHTFNDHKSSVNSIAWAPHELGLSLACGSSDGNISVFTATADGGWDTTRIDQAHP  149 (302)
Q Consensus        70 ~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~h~~~i~~l~~~pd~~~~~l~sg~~d~~v~~~~~~~~~~~~~~~~~~~h~  149 (302)
                      .+||.|+.-|...+|...+...  ..+.-..|+.-|.-+.=.-| ....+..++.|.++++++++.+....     +.|.
T Consensus        85 ~~la~gG~~g~fd~~~~~tn~~--h~~~cd~snn~v~~~~r~cd-~~~~~~i~sndht~k~~~~~~~s~~~-----~~h~  156 (344)
T KOG4532|consen   85 VTLADGGASGQFDLFACNTNDG--HLYQCDVSNNDVTLVKRYCD-LKFPLNIASNDHTGKTMVVSGDSNKF-----AVHN  156 (344)
T ss_pred             cEEEeccccceeeeecccCccc--ceeeecccccchhhhhhhcc-cccceeeccCCcceeEEEEecCcccc-----eeec
Confidence            4789999999999998865421  22222233332221110011 12246677889999999886432111     1232


Q ss_pred             C--CeEEEEeCCCCCCCceeecccCCCceeEEEeeCCCcEEEEEEecCccccccccccccCCCceeEEEeeCCCCCCccE
Q 022111          150 V--GVTSVSWAPAMAPGALVGLGLLDPVQKLASCGCDNTVKVWKMYNGIWKMDCFPALQMHSDWVRSVAWAPNLGLPKST  227 (302)
Q Consensus       150 ~--~v~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~D~~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~  227 (302)
                      .  .+.++.++++              ++++++.+..+.|.+|.+......... .....-++.-.+.+|+...    ..
T Consensus       157 ~~~~~ns~~~snd--------------~~~~~~Vgds~~Vf~y~id~~sey~~~-~~~a~t~D~gF~~S~s~~~----~~  217 (344)
T KOG4532|consen  157 QNLTQNSLHYSND--------------PSWGSSVGDSRRVFRYAIDDESEYIEN-IYEAPTSDHGFYNSFSEND----LQ  217 (344)
T ss_pred             cccceeeeEEcCC--------------CceEEEecCCCcceEEEeCCccceeee-eEecccCCCceeeeeccCc----ce
Confidence            2  2677777775              378888888888999988653211111 0112223344788888763    78


Q ss_pred             EEEEecCCeEEEEEeccCCcce--eeeeeccCCCcEEEEEEccCC--CEEEEecCC-ceEEeeecCCceEEEeeecC
Q 022111          228 IASASQDGTVVIWTCAKEGEQW--EGRVLKDFKTPVWSVSWSLTG--NLLAVADAN-NVTLWKEAVDGEWQQVSVVE  299 (302)
Q Consensus       228 l~s~s~D~~i~iwd~~~~~~~~--~~~~~~~~~~~v~~~~~spdg--~~la~~~~d-~i~~w~~~~~~~~~~~~~~~  299 (302)
                      +|++.+||++.|||++...-+-  .......|.+.+..+.|+|-|  .+|....+- .+++-|+- ++.-++..++-
T Consensus       218 FAv~~Qdg~~~I~DVR~~~tpm~~~sstrp~hnGa~R~c~Fsl~g~lDLLf~sEhfs~~hv~D~R-~~~~~q~I~i~  293 (344)
T KOG4532|consen  218 FAVVFQDGTCAIYDVRNMATPMAEISSTRPHHNGAFRVCRFSLYGLLDLLFISEHFSRVHVVDTR-NYVNHQVIVIP  293 (344)
T ss_pred             EEEEecCCcEEEEEecccccchhhhcccCCCCCCceEEEEecCCCcceEEEEecCcceEEEEEcc-cCceeeEEecC
Confidence            9999999999999998643211  011224577889999999866  455454444 58888874 44455555443

>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]

Probab=98.72  E-value=1.3e-07  Score=78.50  Aligned_cols=225  Identities=13%  Similarity=0.231  Sum_probs=125.2

Q ss_pred             ccCeEEEEeeCCCCCCEEEEEeCCCeEEEEEcCCCCc--eeEEEEecCCC------------CCeeEEEecCCCCCcEEE
Q 022111           55 RGPVWQVAWAHPKFGSILASCSYDGQVIIWKEGNQND--WTQAHTFNDHK------------SSVNSIAWAPHELGLSLA  120 (302)
Q Consensus        55 ~~~v~~v~~~~~~~~~~l~s~s~D~~i~iwd~~~~~~--~~~~~~~~~h~------------~~i~~l~~~pd~~~~~l~  120 (302)
                      ...|+++.|..  .|.+|++|...|.+.++.-+....  .+-...|+.|.            .+|..+.|..+..-..++
T Consensus        26 ad~ItaVefd~--tg~YlatGDkgGRVvlfer~~s~~ceykf~teFQshe~EFDYLkSleieEKin~I~w~~~t~r~hFL  103 (460)
T COG5170          26 ADKITAVEFDE--TGLYLATGDKGGRVVLFEREKSYGCEYKFFTEFQSHELEFDYLKSLEIEEKINAIEWFDDTGRNHFL  103 (460)
T ss_pred             cceeeEEEecc--ccceEeecCCCceEEEeecccccccchhhhhhhcccccchhhhhhccHHHHhhheeeecCCCcceEE
Confidence            35688999964  389999999999999997543221  00111233443            578888997553223566


Q ss_pred             EEecCCcEEEEEecCCCC-------------------e------eeeeecccCCCCeEEEE---eCCCCCCCceeecccC
Q 022111          121 CGSSDGNISVFTATADGG-------------------W------DTTRIDQAHPVGVTSVS---WAPAMAPGALVGLGLL  172 (302)
Q Consensus       121 sg~~d~~v~~~~~~~~~~-------------------~------~~~~~~~~h~~~v~~~~---~~~~~~~~~~~~~~~~  172 (302)
                      ..+.|++|++|.+....-                   .      ...++  .|...+-+..   .-...++..+.++.+.
T Consensus       104 lstNdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprl--s~hd~iiaa~p~rvyaNaH~yhiNSiS~N  181 (460)
T COG5170         104 LSTNDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRL--SEHDEIIAAKPCRVYANAHPYHINSISFN  181 (460)
T ss_pred             EecCCceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccc--cccceEEEeccceeccccceeEeeeeeec
Confidence            667899999998753310                   0      00000  0111111100   0000111111122222


Q ss_pred             CCceeEEEeeCCCcEEEEEEecCccccccccccccC-----CCceeEEEeeCCCCCCccEEEEEecCCeEEEEEeccCC-
Q 022111          173 DPVQKLASCGCDNTVKVWKMYNGIWKMDCFPALQMH-----SDWVRSVAWAPNLGLPKSTIASASQDGTVVIWTCAKEG-  246 (302)
Q Consensus       173 ~~~~~l~s~~~D~~v~iwd~~~~~~~~~~~~~~~~h-----~~~v~~v~~~p~~~~~~~~l~s~s~D~~i~iwd~~~~~-  246 (302)
                      .+...++|+ .|=.|.+|++.-....+..+ ....|     ..-|++..|+|..   -+.+.-.+..|+|++-|++... 
T Consensus       182 sD~et~lSa-DdLrINLWnl~i~D~sFnIV-DiKP~nmeeLteVItSaeFhp~~---cn~fmYSsSkG~Ikl~DlRq~al  256 (460)
T COG5170         182 SDKETLLSA-DDLRINLWNLEIIDGSFNIV-DIKPHNMEELTEVITSAEFHPEM---CNVFMYSSSKGEIKLNDLRQSAL  256 (460)
T ss_pred             Cchheeeec-cceeeeeccccccCCceEEE-eccCccHHHHHHHHhhcccCHhH---cceEEEecCCCcEEehhhhhhhh
Confidence            233445544 56678899875432111111 11222     2458899999974   3678888889999999998421 


Q ss_pred             ----cceeee--------eeccCCCcEEEEEEccCCCEEEEecCCceEEeeecC
Q 022111          247 ----EQWEGR--------VLKDFKTPVWSVSWSLTGNLLAVADANNVTLWKEAV  288 (302)
Q Consensus       247 ----~~~~~~--------~~~~~~~~v~~~~~spdg~~la~~~~d~i~~w~~~~  288 (302)
                          ......        ...+....|..+.|+|+|++|++-+=.+++|||...
T Consensus       257 cdn~~klfe~~~D~v~~~ff~eivsSISD~kFs~ngryIlsRdyltvkiwDvnm  310 (460)
T COG5170         257 CDNSKKLFELTIDGVDVDFFEEIVSSISDFKFSDNGRYILSRDYLTVKIWDVNM  310 (460)
T ss_pred             ccCchhhhhhccCcccchhHHHHhhhhcceEEcCCCcEEEEeccceEEEEeccc
Confidence                000000        001112357778999999998876555899999754

>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide

Probab=98.71  E-value=7.8e-08  Score=55.91  Aligned_cols=38  Identities=34%  Similarity=0.752  Sum_probs=34.6

Q ss_pred             eEEEEecCcccCeEEEEeeCCCCCCEEEEEeCCCeEEEEE
Q 022111           46 QHLATLKGHRGPVWQVAWAHPKFGSILASCSYDGQVIIWK   85 (302)
Q Consensus        46 ~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~s~D~~i~iwd   85 (302)
                      +++.++.+|.+.|++|+|+++  +++|++++.|++|++||
T Consensus         2 ~~~~~~~~h~~~i~~i~~~~~--~~~~~s~~~D~~i~vwd   39 (39)
T PF00400_consen    2 KCVRTFRGHSSSINSIAWSPD--GNFLASGSSDGTIRVWD   39 (39)
T ss_dssp             EEEEEEESSSSSEEEEEEETT--SSEEEEEETTSEEEEEE
T ss_pred             eEEEEEcCCCCcEEEEEEecc--cccceeeCCCCEEEEEC
Confidence            467789999999999999875  78999999999999997

WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....

>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation []

Probab=98.65  E-value=1.2e-05  Score=79.15  Aligned_cols=236  Identities=16%  Similarity=0.291  Sum_probs=135.9

Q ss_pred             ccceeEEEEccCCCEEEEeeCCCcEEEE----eecCCCceEEEEecCcccCeEEEEeeCCCCCCEEEEEeCCCeEEEEEc
Q 022111           11 EDTVHDVAMDFYGKRLATASSDSSIKII----GLSNSASQHLATLKGHRGPVWQVAWAHPKFGSILASCSYDGQVIIWKE   86 (302)
Q Consensus        11 ~~~v~~~~~s~~~~~l~s~~~d~~v~lw----~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~s~D~~i~iwd~   86 (302)
                      .+.|.++.+-++...++.+..+|.|.+.    +......+.+..+   ...|.+++|||+  ..+||.+..++++.+..-
T Consensus        75 ~~~ivs~~yl~d~~~l~~~~~~Gdi~~~~~~~~~~~~~~E~VG~v---d~GI~a~~WSPD--~Ella~vT~~~~l~~mt~  149 (928)
T PF04762_consen   75 NDKIVSFQYLADSESLCIALASGDIILVREDPDPDEDEIEIVGSV---DSGILAASWSPD--EELLALVTGEGNLLLMTR  149 (928)
T ss_pred             CCcEEEEEeccCCCcEEEEECCceEEEEEccCCCCCceeEEEEEE---cCcEEEEEECCC--cCEEEEEeCCCEEEEEec
Confidence            3578888888888888889999999999    5444434444444   567999999986  688888888888888642


Q ss_pred             CCCCceeEEEEecCCCCCeeEEEecCCCCC-cEEEEEecCCcEEEEEecCCCC-----eeee--eeccc---CCCCeEEE
Q 022111           87 GNQNDWTQAHTFNDHKSSVNSIAWAPHELG-LSLACGSSDGNISVFTATADGG-----WDTT--RIDQA---HPVGVTSV  155 (302)
Q Consensus        87 ~~~~~~~~~~~~~~h~~~i~~l~~~pd~~~-~~l~sg~~d~~v~~~~~~~~~~-----~~~~--~~~~~---h~~~v~~~  155 (302)
                          .+.++....          +.+++.| ...++.++.++=.-|..+.++.     .+..  ....+   +...-..+
T Consensus       150 ----~fd~i~E~~----------l~~~~~~~~~~VsVGWGkKeTQF~Gs~gK~aa~~~~~p~~~~~d~~~~s~dd~~~~I  215 (928)
T PF04762_consen  150 ----DFDPISEVP----------LDSDDFGESKHVSVGWGKKETQFHGSAGKAAARQLRDPTVPKVDEGKLSWDDGRVRI  215 (928)
T ss_pred             ----cceEEEEee----------cCccccCCCceeeeccCcccCccCcchhhhhhhhccCCCCCccccCccccCCCceEE
Confidence                122332222          2222111 1233334433322222211110     0000  00001   22244567


Q ss_pred             EeCCCCCCCceeecccCCCceeEEEeeC---C---CcEEEEEEecCccccccccccccCCCceeEEEeeCCCCCCccEEE
Q 022111          156 SWAPAMAPGALVGLGLLDPVQKLASCGC---D---NTVKVWKMYNGIWKMDCFPALQMHSDWVRSVAWAPNLGLPKSTIA  229 (302)
Q Consensus       156 ~~~~~~~~~~~~~~~~~~~~~~l~s~~~---D---~~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~l~  229 (302)
                      +|-.+              |.++|..+.   +   +.+|||+-. +..    ..+...-.+--.+++|-|.|    +.||
T Consensus       216 SWRGD--------------G~yFAVss~~~~~~~~R~iRVy~Re-G~L----~stSE~v~gLe~~l~WrPsG----~lIA  272 (928)
T PF04762_consen  216 SWRGD--------------GEYFAVSSVEPETGSRRVIRVYSRE-GEL----QSTSEPVDGLEGALSWRPSG----NLIA  272 (928)
T ss_pred             EECCC--------------CcEEEEEEEEcCCCceeEEEEECCC-ceE----EeccccCCCccCCccCCCCC----CEEE
Confidence            78654              467666653   2   578889843 321    11111112223578999996    6787


Q ss_pred             EEec---CCeEEEEEeccCCcceeeeeec---cCCCcEEEEEEccCCCEEEEecCCceEEeeecCCceE
Q 022111          230 SASQ---DGTVVIWTCAKEGEQWEGRVLK---DFKTPVWSVSWSLTGNLLAVADANNVTLWKEAVDGEW  292 (302)
Q Consensus       230 s~s~---D~~i~iwd~~~~~~~~~~~~~~---~~~~~v~~~~~spdg~~la~~~~d~i~~w~~~~~~~~  292 (302)
                      +.-.   ...|.+|.-..   .+.+.+..   .....|..++||+|+.+||+.-.+.|.||-.. |-.|
T Consensus       273 ~~q~~~~~~~VvFfErNG---LrhgeF~l~~~~~~~~v~~l~Wn~ds~iLAv~~~~~vqLWt~~-NYHW  337 (928)
T PF04762_consen  273 SSQRLPDRHDVVFFERNG---LRHGEFTLRFDPEEEKVIELAWNSDSEILAVWLEDRVQLWTRS-NYHW  337 (928)
T ss_pred             EEEEcCCCcEEEEEecCC---cEeeeEecCCCCCCceeeEEEECCCCCEEEEEecCCceEEEee-CCEE
Confidence            7754   33566664332   22223222   22456899999999999999988899999763 4444

>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=98.65  E-value=1.2e-06  Score=76.22  Aligned_cols=254  Identities=16%  Similarity=0.148  Sum_probs=161.3

Q ss_pred             ccccceeEEEEccCCCEEEEeeCCCcEEEEeecC-CCceEEEEecCcccCeEEEEeeCCCCCCEEEEEeC-CCeEEEEEc
Q 022111            9 GHEDTVHDVAMDFYGKRLATASSDSSIKIIGLSN-SASQHLATLKGHRGPVWQVAWAHPKFGSILASCSY-DGQVIIWKE   86 (302)
Q Consensus         9 ~h~~~v~~~~~s~~~~~l~s~~~d~~v~lw~~~~-~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~s~-D~~i~iwd~   86 (302)
                      -|++.|+.+.-+ -.+++.+++.||.++-|.-.. .-.+.+.-+..|.+.|.+++.+-  ++.+++|++. |+.++++|+
T Consensus         7 mhrd~i~hv~~t-ka~fiiqASlDGh~KFWkKs~isGvEfVKhFraHL~~I~sl~~S~--dg~L~~Sv~d~Dhs~KvfDv   83 (558)
T KOG0882|consen    7 MHRDVITHVFPT-KAKFIIQASLDGHKKFWKKSRISGVEFVKHFRAHLGVILSLAVSY--DGWLFRSVEDPDHSVKVFDV   83 (558)
T ss_pred             cccceeeeEeee-hhheEEeeecchhhhhcCCCCccceeehhhhHHHHHHHHhhhccc--cceeEeeccCcccceeEEEe
Confidence            488999886544 367999999999999997654 22234455678988888888764  4788899887 999999998


Q ss_pred             CCCCceeEEEEecCCCCCeeEEEe--cCCCC-CcEEEEEecCCcEEEEEecCCCCeeeeeecccCCCCeEEEEeCCCCCC
Q 022111           87 GNQNDWTQAHTFNDHKSSVNSIAW--APHEL-GLSLACGSSDGNISVFTATADGGWDTTRIDQAHPVGVTSVSWAPAMAP  163 (302)
Q Consensus        87 ~~~~~~~~~~~~~~h~~~i~~l~~--~pd~~-~~~l~sg~~d~~v~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~  163 (302)
                      ++-.-   ...++.. .....+.|  +|... ....++.-.++.+.++|...+.+ +......-|..+|..+.+++..  
T Consensus        84 En~Dm---inmiKL~-~lPg~a~wv~skGd~~s~IAVs~~~sg~i~VvD~~~d~~-q~~~fkklH~sPV~~i~y~qa~--  156 (558)
T KOG0882|consen   84 ENFDM---INMIKLV-DLPGFAEWVTSKGDKISLIAVSLFKSGKIFVVDGFGDFC-QDGYFKKLHFSPVKKIRYNQAG--  156 (558)
T ss_pred             eccch---hhhcccc-cCCCceEEecCCCCeeeeEEeecccCCCcEEECCcCCcC-ccceecccccCceEEEEeeccc--
Confidence            65421   1111111 11122233  33211 12333444568889998765443 2223344788999999988763  


Q ss_pred             CceeecccCCCceeEEEeeCCCcEEEEEEecCc--------cccc---cccccccCCCceeEEEeeCCCCCCccEEEEEe
Q 022111          164 GALVGLGLLDPVQKLASCGCDNTVKVWKMYNGI--------WKMD---CFPALQMHSDWVRSVAWAPNLGLPKSTIASAS  232 (302)
Q Consensus       164 ~~~~~~~~~~~~~~l~s~~~D~~v~iwd~~~~~--------~~~~---~~~~~~~h~~~v~~v~~~p~~~~~~~~l~s~s  232 (302)
                                  ..++|.-..|+|.-|......        +.++   .+..+.--+....++.|+|++    ..+.+-+
T Consensus       157 ------------Ds~vSiD~~gmVEyWs~e~~~qfPr~~l~~~~K~eTdLy~f~K~Kt~pts~Efsp~g----~qistl~  220 (558)
T KOG0882|consen  157 ------------DSAVSIDISGMVEYWSAEGPFQFPRTNLNFELKHETDLYGFPKAKTEPTSFEFSPDG----AQISTLN  220 (558)
T ss_pred             ------------cceeeccccceeEeecCCCcccCccccccccccccchhhcccccccCccceEEcccc----CcccccC
Confidence                        567777778999999976311        1111   111222234567899999996    7899999


Q ss_pred             cCCeEEEEEeccCCccee-----------ee---------e---------eccCC-CcEEEEEEccCCCEEEEecCCceE
Q 022111          233 QDGTVVIWTCAKEGEQWE-----------GR---------V---------LKDFK-TPVWSVSWSLTGNLLAVADANNVT  282 (302)
Q Consensus       233 ~D~~i~iwd~~~~~~~~~-----------~~---------~---------~~~~~-~~v~~~~~spdg~~la~~~~d~i~  282 (302)
                      .|..||+++.+..+..+.           .+         +         +..+. .+-..+.|...|++|+.+.-=+|+
T Consensus       221 ~DrkVR~F~~KtGklvqeiDE~~t~~~~q~ks~y~l~~VelgRRmaverelek~~~~~~~~~~fdes~~flly~t~~gik  300 (558)
T KOG0882|consen  221 PDRKVRGFVFKTGKLVQEIDEVLTDAQYQPKSPYGLMHVELGRRMAVERELEKHGSTVGTNAVFDESGNFLLYGTILGIK  300 (558)
T ss_pred             cccEEEEEEeccchhhhhhhccchhhhhccccccccceeehhhhhhHHhhHhhhcCcccceeEEcCCCCEEEeecceeEE
Confidence            999999999876431100           00         0         00011 123356788889999988665777


Q ss_pred             EeeecC
Q 022111          283 LWKEAV  288 (302)
Q Consensus       283 ~w~~~~  288 (302)
                      +.....
T Consensus       301 vin~~t  306 (558)
T KOG0882|consen  301 VINLDT  306 (558)
T ss_pred             EEEeec
Confidence            776543

>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal

Probab=98.58  E-value=0.00018  Score=59.58  Aligned_cols=219  Identities=16%  Similarity=0.287  Sum_probs=118.5

Q ss_pred             EEEEccCCCEEEEeeCCCcEEEEeecCCCceEEEEecCcc---cCeEEEEeeCCCCCCEEEEEeCCCeEEEEEcCCCCce
Q 022111           16 DVAMDFYGKRLATASSDSSIKIIGLSNSASQHLATLKGHR---GPVWQVAWAHPKFGSILASCSYDGQVIIWKEGNQNDW   92 (302)
Q Consensus        16 ~~~~s~~~~~l~s~~~d~~v~lw~~~~~~~~~~~~~~~h~---~~v~~v~~~~~~~~~~l~s~s~D~~i~iwd~~~~~~~   92 (302)
                      .++.+.+|+.||.- .|..|.|=.-..+-...+.+..-++   ..=+.++|+++  +.+||.+...|+|+++|+....-.
T Consensus         2 ~~~~~~~Gk~lAi~-qd~~iEiRsa~Ddf~si~~kcqVpkD~~PQWRkl~WSpD--~tlLa~a~S~G~i~vfdl~g~~lf   78 (282)
T PF15492_consen    2 HLALSSDGKLLAIL-QDQCIEIRSAKDDFSSIIGKCQVPKDPNPQWRKLAWSPD--CTLLAYAESTGTIRVFDLMGSELF   78 (282)
T ss_pred             ceeecCCCcEEEEE-eccEEEEEeccCCchheeEEEecCCCCCchheEEEECCC--CcEEEEEcCCCeEEEEecccceeE
Confidence            35678899888764 5766665332211122223332222   22367999874  899999999999999998542110


Q ss_pred             --eEEEEe-cCCCCCeeEEEecCCC-C---CcEEEEEecCCcEEEEEecCC--CCe-ee--eeecccCCCCeEEEEeCCC
Q 022111           93 --TQAHTF-NDHKSSVNSIAWAPHE-L---GLSLACGSSDGNISVFTATAD--GGW-DT--TRIDQAHPVGVTSVSWAPA  160 (302)
Q Consensus        93 --~~~~~~-~~h~~~i~~l~~~pd~-~---~~~l~sg~~d~~v~~~~~~~~--~~~-~~--~~~~~~h~~~v~~~~~~~~  160 (302)
                        .+...+ ..-...|..+.|.+.. +   ...|+.-..+|.++-|-+..+  ... ..  ..+...++..|+++.|.|.
T Consensus        79 ~I~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~Sy~vs~gt~q~y~e~hsfsf~~~yp~Gi~~~vy~p~  158 (282)
T PF15492_consen   79 VIPPAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRSYLVSVGTNQGYQENHSFSFSSHYPHGINSAVYHPK  158 (282)
T ss_pred             EcCcccccCCccccceeeeEeeccccccccceeEEEEeccceeeeEEEEcccCCcceeeEEEEecccCCCceeEEEEcCC
Confidence              011111 1134667777775321 1   225777788888888876421  111 11  2333345778999999885


Q ss_pred             CCCCceeecccCCCceeEEEeeCCCcEEEEEEecCc----------------------ccc---ccccccccCCCceeEE
Q 022111          161 MAPGALVGLGLLDPVQKLASCGCDNTVKVWKMYNGI----------------------WKM---DCFPALQMHSDWVRSV  215 (302)
Q Consensus       161 ~~~~~~~~~~~~~~~~~l~s~~~D~~v~iwd~~~~~----------------------~~~---~~~~~~~~h~~~v~~v  215 (302)
                      ..   ++-++--.+.+-..+.+.+.-+.-|.+-+..                      +++   ..........+.|..+
T Consensus       159 h~---LLlVgG~~~~~~~~s~a~~~GLtaWRiL~~~Pyyk~v~~~~~~~~~~~~~~~~~~~~~~~~fs~~~~~~d~i~km  235 (282)
T PF15492_consen  159 HR---LLLVGGCEQNQDGMSKASSCGLTAWRILSDSPYYKQVTSSEDDITASSKRRGLLRIPSFKFFSRQGQEQDGIFKM  235 (282)
T ss_pred             CC---EEEEeccCCCCCccccccccCceEEEEcCCCCcEEEccccCccccccccccceeeccceeeeeccccCCCceEEE
Confidence            31   1100000000000010111123344432210                      000   0000112346789999


Q ss_pred             EeeCCCCCCccEEEEEecCCeEEEEEecc
Q 022111          216 AWAPNLGLPKSTIASASQDGTVVIWTCAK  244 (302)
Q Consensus       216 ~~~p~~~~~~~~l~s~s~D~~i~iwd~~~  244 (302)
                      +.|||+    ..||+...+|.|.+|++-.
T Consensus       236 SlSPdg----~~La~ih~sG~lsLW~iPs  260 (282)
T PF15492_consen  236 SLSPDG----SLLACIHFSGSLSLWEIPS  260 (282)
T ss_pred             EECCCC----CEEEEEEcCCeEEEEecCc
Confidence            999996    7899999999999999865

>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]

Probab=98.58  E-value=3.1e-05  Score=69.22  Aligned_cols=234  Identities=14%  Similarity=0.211  Sum_probs=133.3

Q ss_pred             eEEEEccCCCEEEEeeCCCcEEEEeecCCCceEEEEecCcccCeEEEEeeCCCCCCEEE-----EEeCCCeEEEEEcCCC
Q 022111           15 HDVAMDFYGKRLATASSDSSIKIIGLSNSASQHLATLKGHRGPVWQVAWAHPKFGSILA-----SCSYDGQVIIWKEGNQ   89 (302)
Q Consensus        15 ~~~~~s~~~~~l~s~~~d~~v~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~-----s~s~D~~i~iwd~~~~   89 (302)
                      ++..|+.|..+.| ==..+.+.+|+..+-.. ....  -|...|..+.+++-.....||     ..|.-+.+|||.....
T Consensus       129 W~~qfs~dEsl~a-rlv~nev~f~~~~~f~~-~~~k--l~~~~i~~f~lSpgp~~~~vAvyvPe~kGaPa~vri~~~~~~  204 (566)
T KOG2315|consen  129 WVPQFSIDESLAA-RLVSNEVQFYDLGSFKT-IQHK--LSVSGITMLSLSPGPEPPFVAVYVPEKKGAPASVRIYKYPEE  204 (566)
T ss_pred             cccccccchhhhh-hhhcceEEEEecCCccc-eeee--eeccceeeEEecCCCCCceEEEEccCCCCCCcEEEEeccccc
Confidence            3566776654222 22346689998765221 2222  366778888887632234444     3467788999987532


Q ss_pred             CceeEE--EEecCCCCCeeEEEecCCCCCcE-EEEEecCC---------cEEEEEecCCCCeeeeeecccCCCCeEEEEe
Q 022111           90 NDWTQA--HTFNDHKSSVNSIAWAPHELGLS-LACGSSDG---------NISVFTATADGGWDTTRIDQAHPVGVTSVSW  157 (302)
Q Consensus        90 ~~~~~~--~~~~~h~~~i~~l~~~pd~~~~~-l~sg~~d~---------~v~~~~~~~~~~~~~~~~~~~h~~~v~~~~~  157 (302)
                      .....+  ++|-  ..---.+.|++-..+.+ |++..-|+         ++.+++..  +......+  .-..+|.++.|
T Consensus       205 ~~~~~~a~ksFF--kadkvqm~WN~~gt~LLvLastdVDktn~SYYGEq~Lyll~t~--g~s~~V~L--~k~GPVhdv~W  278 (566)
T KOG2315|consen  205 GQHQPVANKSFF--KADKVQMKWNKLGTALLVLASTDVDKTNASYYGEQTLYLLATQ--GESVSVPL--LKEGPVHDVTW  278 (566)
T ss_pred             cccchhhhcccc--ccceeEEEeccCCceEEEEEEEeecCCCccccccceEEEEEec--CceEEEec--CCCCCceEEEE
Confidence            211111  2221  11123456776644443 34444444         33333332  22111222  34678999999


Q ss_pred             CCCCCCCceeecccCCCceeEEEeeCCCcEEEEEEecCccccccccccccCCCceeEEEeeCCCCCCccEEEEEecC---
Q 022111          158 APAMAPGALVGLGLLDPVQKLASCGCDNTVKVWKMYNGIWKMDCFPALQMHSDWVRSVAWAPNLGLPKSTIASASQD---  234 (302)
Q Consensus       158 ~~~~~~~~~~~~~~~~~~~~l~s~~~D~~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~l~s~s~D---  234 (302)
                      +|++..            =.++-|=.-..+-|+|++..       ..+.--+++=+++-|+|.+    +.|+-++.+   
T Consensus       279 ~~s~~E------------F~VvyGfMPAkvtifnlr~~-------~v~df~egpRN~~~fnp~g----~ii~lAGFGNL~  335 (566)
T KOG2315|consen  279 SPSGRE------------FAVVYGFMPAKVTIFNLRGK-------PVFDFPEGPRNTAFFNPHG----NIILLAGFGNLP  335 (566)
T ss_pred             CCCCCE------------EEEEEecccceEEEEcCCCC-------EeEeCCCCCccceEECCCC----CEEEEeecCCCC
Confidence            997521            11233444567889998643       2233345666899999986    667777654   


Q ss_pred             CeEEEEEeccCCcceeeeeeccCC-CcEEEEEEccCCCEEEEec-------CCceEEeeec
Q 022111          235 GTVVIWTCAKEGEQWEGRVLKDFK-TPVWSVSWSLTGNLLAVAD-------ANNVTLWKEA  287 (302)
Q Consensus       235 ~~i~iwd~~~~~~~~~~~~~~~~~-~~v~~~~~spdg~~la~~~-------~d~i~~w~~~  287 (302)
                      |.|-|||+...+      .+..+. ..-.-++|+|||+++++|.       +++++||...
T Consensus       336 G~mEvwDv~n~K------~i~~~~a~~tt~~eW~PdGe~flTATTaPRlrvdNg~Kiwhyt  390 (566)
T KOG2315|consen  336 GDMEVWDVPNRK------LIAKFKAANTTVFEWSPDGEYFLTATTAPRLRVDNGIKIWHYT  390 (566)
T ss_pred             CceEEEeccchh------hccccccCCceEEEEcCCCcEEEEEeccccEEecCCeEEEEec
Confidence            579999987532      112222 2345689999999998873       2479999864

>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]

Probab=98.57  E-value=2.8e-05  Score=68.80  Aligned_cols=246  Identities=12%  Similarity=0.133  Sum_probs=136.9

Q ss_pred             ceeEEEEccCCCEEEEeeCCC---------------cEEEEeecCCCceEEEEecCcccC--eE-EEEeeCCCCCCEEEE
Q 022111           13 TVHDVAMDFYGKRLATASSDS---------------SIKIIGLSNSASQHLATLKGHRGP--VW-QVAWAHPKFGSILAS   74 (302)
Q Consensus        13 ~v~~~~~s~~~~~l~s~~~d~---------------~v~lw~~~~~~~~~~~~~~~h~~~--v~-~v~~~~~~~~~~l~s   74 (302)
                      .|.-+.|+|.+++|.+-+...               .+.+||..++  ..+..+..-..+  .+ -++|+.+  .+++|-
T Consensus        73 ~V~~~~fSP~~kYL~tw~~~pi~~pe~e~sp~~~~n~~~vwd~~sg--~iv~sf~~~~q~~~~Wp~~k~s~~--D~y~AR  148 (561)
T COG5354          73 DVKYLDFSPNEKYLVTWSREPIIEPEIEISPFTSKNNVFVWDIASG--MIVFSFNGISQPYLGWPVLKFSID--DKYVAR  148 (561)
T ss_pred             CceecccCcccceeeeeccCCccChhhccCCccccCceeEEeccCc--eeEeeccccCCcccccceeeeeec--chhhhh
Confidence            467788999999999876433               4899998664  455566554444  55 6778754  455554


Q ss_pred             EeCCCeEEEEEcCCCCceeEEEEecCCCCCeeEEEecCCCCCcEEEE-----EecCCcEEEEEecCCCCeeeeeecccCC
Q 022111           75 CSYDGQVIIWKEGNQNDWTQAHTFNDHKSSVNSIAWAPHELGLSLAC-----GSSDGNISVFTATADGGWDTTRIDQAHP  149 (302)
Q Consensus        75 ~s~D~~i~iwd~~~~~~~~~~~~~~~h~~~i~~l~~~pd~~~~~l~s-----g~~d~~v~~~~~~~~~~~~~~~~~~~h~  149 (302)
                      . ....+.|+++..+-...+.+.+.  ..-|....|+|.+++..||.     ...+..+++|.+..........+-   .
T Consensus       149 v-v~~sl~i~e~t~n~~~~p~~~lr--~~gi~dFsisP~~n~~~la~~tPEk~~kpa~~~i~sIp~~s~l~tk~lf---k  222 (561)
T COG5354         149 V-VGSSLYIHEITDNIEEHPFKNLR--PVGILDFSISPEGNHDELAYWTPEKLNKPAMVRILSIPKNSVLVTKNLF---K  222 (561)
T ss_pred             h-ccCeEEEEecCCccccCchhhcc--ccceeeEEecCCCCCceEEEEccccCCCCcEEEEEEccCCCeeeeeeeE---e
Confidence            4 33568999873322112222322  24577888888755544443     345667888877533322221111   1


Q ss_pred             CCeEEEEeCCCCCCCceeecc--cCCCceeEEEeeCCCcEEEEEEecCccccccccccccCCCceeEEEeeCCCCCCccE
Q 022111          150 VGVTSVSWAPAMAPGALVGLG--LLDPVQKLASCGCDNTVKVWKMYNGIWKMDCFPALQMHSDWVRSVAWAPNLGLPKST  227 (302)
Q Consensus       150 ~~v~~~~~~~~~~~~~~~~~~--~~~~~~~l~s~~~D~~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~  227 (302)
                      ..-..+.|.+.+. ..++.+.  ...+..++    ...+++|+++....     ++...+-.++|.+.+|+|.+.  +=-
T Consensus       223 ~~~~qLkW~~~g~-~ll~l~~t~~ksnKsyf----gesnLyl~~~~e~~-----i~V~~~~~~pVhdf~W~p~S~--~F~  290 (561)
T COG5354         223 VSGVQLKWQVLGK-YLLVLVMTHTKSNKSYF----GESNLYLLRITERS-----IPVEKDLKDPVHDFTWEPLSS--RFA  290 (561)
T ss_pred             ecccEEEEecCCc-eEEEEEEEeeeccccee----ccceEEEEeecccc-----cceeccccccceeeeecccCC--cee
Confidence            1123567776542 1111110  10111111    13568888887432     222224578999999999862  122


Q ss_pred             EEEEecCCeEEEEEeccCCcceeeeeeccCCCcEEEEEEccCCCEEEEecCC----ceEEeee
Q 022111          228 IASASQDGTVVIWTCAKEGEQWEGRVLKDFKTPVWSVSWSLTGNLLAVADAN----NVTLWKE  286 (302)
Q Consensus       228 l~s~s~D~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~la~~~~d----~i~~w~~  286 (302)
                      +++|-++..+.++|++.+-     + .-....+=..+-|||.+++++.++=+    ++-+|+.
T Consensus       291 vi~g~~pa~~s~~~lr~Nl-----~-~~~Pe~~rNT~~fsp~~r~il~agF~nl~gni~i~~~  347 (561)
T COG5354         291 VISGYMPASVSVFDLRGNL-----R-FYFPEQKRNTIFFSPHERYILFAGFDNLQGNIEIFDP  347 (561)
T ss_pred             EEecccccceeecccccce-----E-EecCCcccccccccCcccEEEEecCCccccceEEecc
Confidence            4455589999999987541     1 11122233445677777776665332    3666664

>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]

Probab=98.56  E-value=8.9e-05  Score=65.29  Aligned_cols=143  Identities=15%  Similarity=0.190  Sum_probs=98.9

Q ss_pred             CCCEEEEeeCCCcEEEEeecCCCceEEEEecCcccCeEEEEeeCCCCCCEEEEEeCCC-eEEEEEcCCCCceeEEEEecC
Q 022111           22 YGKRLATASSDSSIKIIGLSNSASQHLATLKGHRGPVWQVAWAHPKFGSILASCSYDG-QVIIWKEGNQNDWTQAHTFND  100 (302)
Q Consensus        22 ~~~~l~s~~~d~~v~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~s~D~-~i~iwd~~~~~~~~~~~~~~~  100 (302)
                      +|.+++..|. |+..|.+...+.  . .++ +|.+.|.-.++..+  ++-++.|..|| .+-|+|.+.+    .++.+..
T Consensus       331 ~Gd~ia~VSR-GkaFi~~~~~~~--~-iqv-~~~~~VrY~r~~~~--~e~~vigt~dgD~l~iyd~~~~----e~kr~e~  399 (668)
T COG4946         331 NGDYIALVSR-GKAFIMRPWDGY--S-IQV-GKKGGVRYRRIQVD--PEGDVIGTNDGDKLGIYDKDGG----EVKRIEK  399 (668)
T ss_pred             CCcEEEEEec-CcEEEECCCCCe--e-EEc-CCCCceEEEEEccC--CcceEEeccCCceEEEEecCCc----eEEEeeC
Confidence            4777777764 556676654322  2 223 57777877777644  55678888888 8999998764    4567777


Q ss_pred             CCCCeeEEEecCCCCCcEEEEEecCCcEEEEEecCCCCeeeeeecccCCCCeEEEEeCCCCCCCceeecccCCCceeEEE
Q 022111          101 HKSSVNSIAWAPHELGLSLACGSSDGNISVFTATADGGWDTTRIDQAHPVGVTSVSWAPAMAPGALVGLGLLDPVQKLAS  180 (302)
Q Consensus       101 h~~~i~~l~~~pd~~~~~l~sg~~d~~v~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~s  180 (302)
                      .-+.|.++..+|+  |+.++.+.....+.++|+.+++.   ..+.+....-|+...|+|+.              +.||-
T Consensus       400 ~lg~I~av~vs~d--GK~~vvaNdr~el~vididngnv---~~idkS~~~lItdf~~~~ns--------------r~iAY  460 (668)
T COG4946         400 DLGNIEAVKVSPD--GKKVVVANDRFELWVIDIDNGNV---RLIDKSEYGLITDFDWHPNS--------------RWIAY  460 (668)
T ss_pred             CccceEEEEEcCC--CcEEEEEcCceEEEEEEecCCCe---eEecccccceeEEEEEcCCc--------------eeEEE
Confidence            8899999999998  78888888777888888875532   22333445668999999864              55555


Q ss_pred             eeCCC----cEEEEEEec
Q 022111          181 CGCDN----TVKVWKMYN  194 (302)
Q Consensus       181 ~~~D~----~v~iwd~~~  194 (302)
                      +-.++    .|+++|+.+
T Consensus       461 afP~gy~tq~Iklydm~~  478 (668)
T COG4946         461 AFPEGYYTQSIKLYDMDG  478 (668)
T ss_pred             ecCcceeeeeEEEEecCC
Confidence            54444    577777754

>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain

Probab=98.53  E-value=0.00054  Score=59.99  Aligned_cols=242  Identities=11%  Similarity=0.067  Sum_probs=120.1

Q ss_pred             EccCCCEEEEeeC----------CCcEEEEeecCCCceEEEEecCc-------ccCeEEEEeeCCCCCCEEEEEe-C-CC
Q 022111           19 MDFYGKRLATASS----------DSSIKIIGLSNSASQHLATLKGH-------RGPVWQVAWAHPKFGSILASCS-Y-DG   79 (302)
Q Consensus        19 ~s~~~~~l~s~~~----------d~~v~lw~~~~~~~~~~~~~~~h-------~~~v~~v~~~~~~~~~~l~s~s-~-D~   79 (302)
                      ++||++.|+.+..          +..|.+||..+.  +.+..+.--       ...-..++++++  |++|+... . +.
T Consensus        53 ~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~--~~~~~i~~p~~p~~~~~~~~~~~~ls~d--gk~l~V~n~~p~~  128 (352)
T TIGR02658        53 VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTH--LPIADIELPEGPRFLVGTYPWMTSLTPD--NKTLLFYQFSPSP  128 (352)
T ss_pred             ECCCCCEEEEEeccccccccCCCCCEEEEEECccC--cEEeEEccCCCchhhccCccceEEECCC--CCEEEEecCCCCC
Confidence            8999988877665          788999998653  344444311       111235677664  78776554 3 78


Q ss_pred             eEEEEEcCCCCceeEEEEecCCCCCeeEEEecCCCCCcEEEEEecCCcEEEEEecCCCCeeeeeecccCC--CCe-EEEE
Q 022111           80 QVIIWKEGNQNDWTQAHTFNDHKSSVNSIAWAPHELGLSLACGSSDGNISVFTATADGGWDTTRIDQAHP--VGV-TSVS  156 (302)
Q Consensus        80 ~i~iwd~~~~~~~~~~~~~~~h~~~i~~l~~~pd~~~~~l~sg~~d~~v~~~~~~~~~~~~~~~~~~~h~--~~v-~~~~  156 (302)
                      .+-+.|+..++   .+.++.--. ...-+..+.+  . ..+. +.|+......+...+..........+.  ..+ ....
T Consensus       129 ~V~VvD~~~~k---vv~ei~vp~-~~~vy~t~e~--~-~~~~-~~Dg~~~~v~~d~~g~~~~~~~~vf~~~~~~v~~rP~  200 (352)
T TIGR02658       129 AVGVVDLEGKA---FVRMMDVPD-CYHIFPTAND--T-FFMH-CRDGSLAKVGYGTKGNPKIKPTEVFHPEDEYLINHPA  200 (352)
T ss_pred             EEEEEECCCCc---EEEEEeCCC-CcEEEEecCC--c-cEEE-eecCceEEEEecCCCceEEeeeeeecCCccccccCCc
Confidence            89999997764   233332111 1111111111  1 1111 234444333333332211110000000  000 0001


Q ss_pred             eCCCCCCCceeecccCCCceeEEEeeCCCcEEEEEEecCcccc-ccccc--cc----c-CCCceeEEEeeCCCCCCccEE
Q 022111          157 WAPAMAPGALVGLGLLDPVQKLASCGCDNTVKVWKMYNGIWKM-DCFPA--LQ----M-HSDWVRSVAWAPNLGLPKSTI  228 (302)
Q Consensus       157 ~~~~~~~~~~~~~~~~~~~~~l~s~~~D~~v~iwd~~~~~~~~-~~~~~--~~----~-h~~~v~~v~~~p~~~~~~~~l  228 (302)
                      +.+             .+++.+....+ |+|.+.|+....... .....  +.    + ..+.+.-++++|+++   ..+
T Consensus       201 ~~~-------------~dg~~~~vs~e-G~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~g~q~ia~~~dg~---~ly  263 (352)
T TIGR02658       201 YSN-------------KSGRLVWPTYT-GKIFQIDLSSGDAKFLPAIEAFTEAEKADGWRPGGWQQVAYHRARD---RIY  263 (352)
T ss_pred             eEc-------------CCCcEEEEecC-CeEEEEecCCCcceecceeeeccccccccccCCCcceeEEEcCCCC---EEE
Confidence            111             12455544444 999999964321110 11111  11    1 223334499999862   333


Q ss_pred             EEEe---------cCCeEEEEEeccCCcceeeeeeccCCCcEEEEEEccCCC-EEEEecC--CceEEeeecCCceEE
Q 022111          229 ASAS---------QDGTVVIWTCAKEGEQWEGRVLKDFKTPVWSVSWSLTGN-LLAVADA--NNVTLWKEAVDGEWQ  293 (302)
Q Consensus       229 ~s~s---------~D~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~spdg~-~la~~~~--d~i~~w~~~~~~~~~  293 (302)
                      +...         ..+.|.++|..+.+.  ..++  .....++++++||||+ +|.++..  +.|.+.|.+......
T Consensus       264 V~~~~~~~~thk~~~~~V~ViD~~t~kv--i~~i--~vG~~~~~iavS~Dgkp~lyvtn~~s~~VsViD~~t~k~i~  336 (352)
T TIGR02658       264 LLADQRAKWTHKTASRFLFVVDAKTGKR--LRKI--ELGHEIDSINVSQDAKPLLYALSTGDKTLYIFDAETGKELS  336 (352)
T ss_pred             EEecCCccccccCCCCEEEEEECCCCeE--EEEE--eCCCceeeEEECCCCCeEEEEeCCCCCcEEEEECcCCeEEe
Confidence            3231         124688888765421  1222  2245799999999999 7776654  369999976544433

This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.

>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.52  E-value=3e-06  Score=78.51  Aligned_cols=189  Identities=19%  Similarity=0.236  Sum_probs=119.0

Q ss_pred             ccceeEEEEccCCCEEEEeeCCCcEEEEeecCCCceEEEEecCcccCeEEEEeeCCCCCCEEEEEeCCCeEEEEEcCCCC
Q 022111           11 EDTVHDVAMDFYGKRLATASSDSSIKIIGLSNSASQHLATLKGHRGPVWQVAWAHPKFGSILASCSYDGQVIIWKEGNQN   90 (302)
Q Consensus        11 ~~~v~~~~~s~~~~~l~s~~~d~~v~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~s~D~~i~iwd~~~~~   90 (302)
                      .+.+++++++  +++|+-|..+|.|++++.....    .+...|+..        +.+|.+++|||.||++.|-.+-+..
T Consensus        39 ~D~is~~av~--~~~~~~GtH~g~v~~~~~~~~~----~~~~~~s~~--------~~~Gey~asCS~DGkv~I~sl~~~~  104 (846)
T KOG2066|consen   39 NDAISCCAVH--DKFFALGTHRGAVYLTTCQGNP----KTNFDHSSS--------ILEGEYVASCSDDGKVVIGSLFTDD  104 (846)
T ss_pred             hhHHHHHHhh--cceeeeccccceEEEEecCCcc----ccccccccc--------ccCCceEEEecCCCcEEEeeccCCc
Confidence            3455555555  6899999999999999875432    333456543        3469999999999999998775543


Q ss_pred             ceeEEEEecCCCCCeeEEEecCC---CCCcEEEEEecCCcEEEEEecCCCCeeeeeecccCCCCeEEEEeCCCCCCCcee
Q 022111           91 DWTQAHTFNDHKSSVNSIAWAPH---ELGLSLACGSSDGNISVFTATADGGWDTTRIDQAHPVGVTSVSWAPAMAPGALV  167 (302)
Q Consensus        91 ~~~~~~~~~~h~~~i~~l~~~pd---~~~~~l~sg~~d~~v~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~  167 (302)
                      .   ..++. ..-++.+++++||   +...++++|+..| +.++.-+--+.+....+ +...++|.++.|.         
T Consensus       105 ~---~~~~d-f~rpiksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgnk~~v~l-~~~eG~I~~i~W~---------  169 (846)
T KOG2066|consen  105 E---ITQYD-FKRPIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWLGNKDSVVL-SEGEGPIHSIKWR---------  169 (846)
T ss_pred             c---ceeEe-cCCcceeEEeccchhhhhhhheeecCcce-EEEehhhhhcCccceee-ecCccceEEEEec---------
Confidence            2   22333 4578999999998   2245799999988 77764332222222222 2446789999995         


Q ss_pred             ecccCCCceeEEEeeCCCcEEEEEEecCcccccccccccc---CCCceeEEEeeCCCCCCccEEEEEecCCeEEEEEec
Q 022111          168 GLGLLDPVQKLASCGCDNTVKVWKMYNGIWKMDCFPALQM---HSDWVRSVAWAPNLGLPKSTIASASQDGTVVIWTCA  243 (302)
Q Consensus       168 ~~~~~~~~~~l~s~~~D~~v~iwd~~~~~~~~~~~~~~~~---h~~~v~~v~~~p~~~~~~~~l~s~s~D~~i~iwd~~  243 (302)
                             |.++|=+..+| |+|||..+.... ..++-...   -.-.-..+.|.++     . -+..+..-+|+|..++
T Consensus       170 -------g~lIAWand~G-v~vyd~~~~~~l-~~i~~p~~~~R~e~fpphl~W~~~-----~-~LVIGW~d~v~i~~I~  233 (846)
T KOG2066|consen  170 -------GNLIAWANDDG-VKVYDTPTRQRL-TNIPPPSQSVRPELFPPHLHWQDE-----D-RLVIGWGDSVKICSIK  233 (846)
T ss_pred             -------CcEEEEecCCC-cEEEecccccee-eccCCCCCCCCcccCCCceEecCC-----C-eEEEecCCeEEEEEEe
Confidence                   35666666555 999998765311 11110000   0111234677665     2 3445567788998887

>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]

Probab=98.49  E-value=2.3e-07  Score=86.63  Aligned_cols=223  Identities=15%  Similarity=0.214  Sum_probs=130.5

Q ss_pred             CCCcccccccccceeEEEEccCCCEEEEeeCCCcEEEEeecCCCceEEEEecCcccCeEEEEeeCCCCCCE-EEEEeCCC
Q 022111            1 MPAQKIETGHEDTVHDVAMDFYGKRLATASSDSSIKIIGLSNSASQHLATLKGHRGPVWQVAWAHPKFGSI-LASCSYDG   79 (302)
Q Consensus         1 ~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~-l~s~s~D~   79 (302)
                      |..++++..|....++++|+.+.++|+.|+..|.|+++++.++.  .......|..+|+.+.=+.  +|.. |.+.+...
T Consensus      1091 Fr~w~~frd~~~~fTc~afs~~~~hL~vG~~~Geik~~nv~sG~--~e~s~ncH~SavT~vePs~--dgs~~Ltsss~S~ 1166 (1516)
T KOG1832|consen 1091 FRSWRSFRDETALFTCIAFSGGTNHLAVGSHAGEIKIFNVSSGS--MEESVNCHQSAVTLVEPSV--DGSTQLTSSSSSS 1166 (1516)
T ss_pred             cccchhhhccccceeeEEeecCCceEEeeeccceEEEEEccCcc--ccccccccccccccccccC--CcceeeeeccccC
Confidence            45677888899999999999999999999999999999997654  3456778999999997443  4554 44444433


Q ss_pred             -eEEEEEcCCCCceeEEEEecCCCCCeeEEEecCCCCCcEEEEEecCCcEEEEEecCCCCeeee-eecccCCCCeEEEEe
Q 022111           80 -QVIIWKEGNQNDWTQAHTFNDHKSSVNSIAWAPHELGLSLACGSSDGNISVFTATADGGWDTT-RIDQAHPVGVTSVSW  157 (302)
Q Consensus        80 -~i~iwd~~~~~~~~~~~~~~~h~~~i~~l~~~pd~~~~~l~sg~~d~~v~~~~~~~~~~~~~~-~~~~~h~~~v~~~~~  157 (302)
                       -..+|++.+.  ..+.++|.+.    .++.|+...-...+.+.  .....+||+.+....+.. .-..+....-+...|
T Consensus      1167 PlsaLW~~~s~--~~~~Hsf~ed----~~vkFsn~~q~r~~gt~--~d~a~~YDvqT~~~l~tylt~~~~~~y~~n~a~F 1238 (1516)
T KOG1832|consen 1167 PLSALWDASST--GGPRHSFDED----KAVKFSNSLQFRALGTE--ADDALLYDVQTCSPLQTYLTDTVTSSYSNNLAHF 1238 (1516)
T ss_pred             chHHHhccccc--cCcccccccc----ceeehhhhHHHHHhccc--ccceEEEecccCcHHHHhcCcchhhhhhcccccc
Confidence             5778998653  2345565543    56677643111123333  345678998765433220 000011112244455


Q ss_pred             CCCCCCCceeecccCCCceeEEEeeCCCcEEEEEEecCccccccccccccCCCceeEEEeeCCCCCCccEEEEEecCCeE
Q 022111          158 APAMAPGALVGLGLLDPVQKLASCGCDNTVKVWKMYNGIWKMDCFPALQMHSDWVRSVAWAPNLGLPKSTIASASQDGTV  237 (302)
Q Consensus       158 ~~~~~~~~~~~~~~~~~~~~l~s~~~D~~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~l~s~s~D~~i  237 (302)
                      +|..              ++++   .||  .+||++..    ..++.|......+.. .|+|.+    +.++-.++    
T Consensus      1239 sP~D--------------~LIl---ndG--vLWDvR~~----~aIh~FD~ft~~~~G-~FHP~g----~eVIINSE---- 1286 (1516)
T KOG1832|consen 1239 SPCD--------------TLIL---NDG--VLWDVRIP----EAIHRFDQFTDYGGG-GFHPSG----NEVIINSE---- 1286 (1516)
T ss_pred             CCCc--------------ceEe---eCc--eeeeeccH----HHHhhhhhheecccc-cccCCC----ceEEeech----
Confidence            6542              2333   233  47888865    233444433333333 588885    56666554    


Q ss_pred             EEEEeccCCcceeeeeeccC-CCcEEEEEEccCCCEEE
Q 022111          238 VIWTCAKEGEQWEGRVLKDF-KTPVWSVSWSLTGNLLA  274 (302)
Q Consensus       238 ~iwd~~~~~~~~~~~~~~~~-~~~v~~~~~spdg~~la  274 (302)
                       |||+++=      .++... .-.-..+.|+..|+++.
T Consensus      1287 -IwD~RTF------~lLh~VP~Ldqc~VtFNstG~VmY 1317 (1516)
T KOG1832|consen 1287 -IWDMRTF------KLLHSVPSLDQCAVTFNSTGDVMY 1317 (1516)
T ss_pred             -hhhhHHH------HHHhcCccccceEEEeccCccchh
Confidence             8998752      111111 11234567777776553

>KOG4190 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.49  E-value=6.6e-07  Score=79.64  Aligned_cols=176  Identities=18%  Similarity=0.250  Sum_probs=112.9

Q ss_pred             EEEecCcccCeEEEEeeCCCCCCEEEEEeCCCeEEEEEcCCCC----ceeEEEEecCCCCCeeEEEecCCCCCcEEEEEe
Q 022111           48 LATLKGHRGPVWQVAWAHPKFGSILASCSYDGQVIIWKEGNQN----DWTQAHTFNDHKSSVNSIAWAPHELGLSLACGS  123 (302)
Q Consensus        48 ~~~~~~h~~~v~~v~~~~~~~~~~l~s~s~D~~i~iwd~~~~~----~~~~~~~~~~h~~~i~~l~~~pd~~~~~l~sg~  123 (302)
                      +..+.||...|+.+.-..+  .+-+++++.|+++++|.++...    ...+..+++.|+.+|.++.|-.+  ...+++  
T Consensus       728 L~nf~GH~~~iRai~AidN--ENSFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL~~--lr~i~S--  801 (1034)
T KOG4190|consen  728 LCNFTGHQEKIRAIAAIDN--ENSFISASKDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFLAD--LRSIAS--  801 (1034)
T ss_pred             eecccCcHHHhHHHHhccc--ccceeeccCCceEEEEEeccccCccccceeeeEhhhccCcccceeeeec--cceeee--
Confidence            4567899999988765322  4568899999999999985432    12356788899999999999766  335554  


Q ss_pred             cCCcEEEEEecCCCCeeeeeecccCCCCeEEEEeCCCCCCCceeecccCCCceeEEEeeCCCcEEEEEEecCccccccc-
Q 022111          124 SDGNISVFTATADGGWDTTRIDQAHPVGVTSVSWAPAMAPGALVGLGLLDPVQKLASCGCDNTVKVWKMYNGIWKMDCF-  202 (302)
Q Consensus       124 ~d~~v~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~D~~v~iwd~~~~~~~~~~~-  202 (302)
                      .|+.|.+||-=-+...........| ..+..+..-|..           +.--.++-|+...+|+++|.+...|.-... 
T Consensus       802 cD~giHlWDPFigr~Laq~~dapk~-~a~~~ikcl~nv-----------~~~iliAgcsaeSTVKl~DaRsce~~~E~kV  869 (1034)
T KOG4190|consen  802 CDGGIHLWDPFIGRLLAQMEDAPKE-GAGGNIKCLENV-----------DRHILIAGCSAESTVKLFDARSCEWTCELKV  869 (1034)
T ss_pred             ccCcceeecccccchhHhhhcCccc-CCCceeEecccC-----------cchheeeeccchhhheeeecccccceeeEEe
Confidence            5899999984221111100000011 111222222221           001245556889999999999876642211 


Q ss_pred             cccccCCCceeEEEeeCCCCCCccEEEEEecCCeEEEEEeccC
Q 022111          203 PALQMHSDWVRSVAWAPNLGLPKSTIASASQDGTVVIWTCAKE  245 (302)
Q Consensus       203 ~~~~~h~~~v~~v~~~p~~~~~~~~l~s~s~D~~i~iwd~~~~  245 (302)
                      ..-.+-...+++++..|.|    +.++.+-..|+|-+-|.+..
T Consensus       870 cna~~Pna~~R~iaVa~~G----N~lAa~LSnGci~~LDaR~G  908 (1034)
T KOG4190|consen  870 CNAPGPNALTRAIAVADKG----NKLAAALSNGCIAILDARNG  908 (1034)
T ss_pred             ccCCCCchheeEEEeccCc----chhhHHhcCCcEEEEecCCC
Confidence            1112345678999998875    78999999999999998754

>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A

Probab=98.48  E-value=7.3e-05  Score=66.40  Aligned_cols=193  Identities=11%  Similarity=0.109  Sum_probs=107.4

Q ss_pred             CEE-EEEeCCCeEEEEEcCCCCceeEEEEecCCCCCeeEEEecCCCCCcEEEEEecCCcEEEEEecCCCCeeeeeecccC
Q 022111           70 SIL-ASCSYDGQVIIWKEGNQNDWTQAHTFNDHKSSVNSIAWAPHELGLSLACGSSDGNISVFTATADGGWDTTRIDQAH  148 (302)
Q Consensus        70 ~~l-~s~s~D~~i~iwd~~~~~~~~~~~~~~~h~~~i~~l~~~pd~~~~~l~sg~~d~~v~~~~~~~~~~~~~~~~~~~h  148 (302)
                      +++ ++-..++++.+.|..+..   .+.++......-..+.++||  +.++..++.|+.|.++|+.+....  ..+..  
T Consensus         6 ~l~~V~~~~~~~v~viD~~t~~---~~~~i~~~~~~h~~~~~s~D--gr~~yv~~rdg~vsviD~~~~~~v--~~i~~--   76 (369)
T PF02239_consen    6 NLFYVVERGSGSVAVIDGATNK---VVARIPTGGAPHAGLKFSPD--GRYLYVANRDGTVSVIDLATGKVV--ATIKV--   76 (369)
T ss_dssp             GEEEEEEGGGTEEEEEETTT-S---EEEEEE-STTEEEEEE-TT---SSEEEEEETTSEEEEEETTSSSEE--EEEE---
T ss_pred             cEEEEEecCCCEEEEEECCCCe---EEEEEcCCCCceeEEEecCC--CCEEEEEcCCCeEEEEECCcccEE--EEEec--
Confidence            444 455678999999987653   45566544444455778998  667888889999999999765322  23321  


Q ss_pred             CCCeEEEEeCCCCCCCceeecccCCCceeEE-EeeCCCcEEEEEEecCccccccccc----cccCCCceeEEEeeCCCCC
Q 022111          149 PVGVTSVSWAPAMAPGALVGLGLLDPVQKLA-SCGCDNTVKVWKMYNGIWKMDCFPA----LQMHSDWVRSVAWAPNLGL  223 (302)
Q Consensus       149 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~-s~~~D~~v~iwd~~~~~~~~~~~~~----~~~h~~~v~~v~~~p~~~~  223 (302)
                      .....++++++++              ++++ ++-.++.+.++|..+... +..+..    ..+.+..+..|-.+|..  
T Consensus        77 G~~~~~i~~s~DG--------------~~~~v~n~~~~~v~v~D~~tle~-v~~I~~~~~~~~~~~~Rv~aIv~s~~~--  139 (369)
T PF02239_consen   77 GGNPRGIAVSPDG--------------KYVYVANYEPGTVSVIDAETLEP-VKTIPTGGMPVDGPESRVAAIVASPGR--  139 (369)
T ss_dssp             SSEEEEEEE--TT--------------TEEEEEEEETTEEEEEETTT--E-EEEEE--EE-TTTS---EEEEEE-SSS--
T ss_pred             CCCcceEEEcCCC--------------CEEEEEecCCCceeEeccccccc-eeecccccccccccCCCceeEEecCCC--
Confidence            2234667777764              5555 456789999999876421 111111    01134567777777764  


Q ss_pred             CccEEEEEecCCeEEEEEeccCCcceeeeeeccCCCcEEEEEEccCCCEEEEec--CCceEEeeecCCce
Q 022111          224 PKSTIASASQDGTVVIWTCAKEGEQWEGRVLKDFKTPVWSVSWSLTGNLLAVAD--ANNVTLWKEAVDGE  291 (302)
Q Consensus       224 ~~~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~la~~~--~d~i~~w~~~~~~~  291 (302)
                       +.++++.-+-+.|-+-|....... .... .+.........|+|+|+++.++.  ++.+-++|..+.+.
T Consensus       140 -~~fVv~lkd~~~I~vVdy~d~~~~-~~~~-i~~g~~~~D~~~dpdgry~~va~~~sn~i~viD~~~~k~  206 (369)
T PF02239_consen  140 -PEFVVNLKDTGEIWVVDYSDPKNL-KVTT-IKVGRFPHDGGFDPDGRYFLVAANGSNKIAVIDTKTGKL  206 (369)
T ss_dssp             -SEEEEEETTTTEEEEEETTTSSCE-EEEE-EE--TTEEEEEE-TTSSEEEEEEGGGTEEEEEETTTTEE
T ss_pred             -CEEEEEEccCCeEEEEEecccccc-ceee-ecccccccccccCcccceeeecccccceeEEEeeccceE
Confidence             235555555565555454433211 1111 12234467789999999887763  34688888765433

...

>KOG4714 consensus Nucleoporin [Nuclear structure]

Probab=98.45  E-value=1.7e-06  Score=70.21  Aligned_cols=148  Identities=18%  Similarity=0.214  Sum_probs=87.1

Q ss_pred             CCEEEEEeCCCeEEEEEcCCCCceeEEEEec-CCCCCeeEEEecCCCCCcEEEEEec-----CCcEEEEEecCCCCeeee
Q 022111           69 GSILASCSYDGQVIIWKEGNQNDWTQAHTFN-DHKSSVNSIAWAPHELGLSLACGSS-----DGNISVFTATADGGWDTT  142 (302)
Q Consensus        69 ~~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~-~h~~~i~~l~~~pd~~~~~l~sg~~-----d~~v~~~~~~~~~~~~~~  142 (302)
                      ++.++++..|+.+.+.+.+...  ....++. .|.+... ......  +..+.++..     -+..+.|+++..+.+...
T Consensus       101 ~t~V~~~~~dg~~~v~s~~~~~--~~~~~i~~~~~~~as-~~~~~~--~~~i~s~~~g~~n~~d~~~a~~~~p~~t~~~~  175 (319)
T KOG4714|consen  101 DNRVCIGYADGSLAVFSTDKDL--ALMSRIPSIHSGSAS-RKICRH--GNSILSGGCGNWNAQDNFYANTLDPIKTLIPS  175 (319)
T ss_pred             CCceEecCCCceEEEEechHHH--hhhhhcccccccccc-cceeec--ccEEecCCcceEeeccceeeeccccccccccc
Confidence            5678999999999999864311  1111111 1111111 111111  223333221     123344555432221111


Q ss_pred             eecccCCCCeEEEEeCCCCCCCceeecccCCCceeEEEeeCCCcEEEEEEecCccccccccccccCCCceeEEEeeCCCC
Q 022111          143 RIDQAHPVGVTSVSWAPAMAPGALVGLGLLDPVQKLASCGCDNTVKVWKMYNGIWKMDCFPALQMHSDWVRSVAWAPNLG  222 (302)
Q Consensus       143 ~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~D~~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~  222 (302)
                      .   .-...|++++-.|..             +.+++.|+.||.+-+||++....   ....+..|+..|+.|-|+|.. 
T Consensus       176 ~---~~~~~v~~l~~hp~q-------------q~~v~cgt~dg~~~l~d~rn~~~---p~S~l~ahk~~i~eV~FHpk~-  235 (319)
T KOG4714|consen  176 K---KALDAVTALCSHPAQ-------------QHLVCCGTDDGIVGLWDARNVAM---PVSLLKAHKAEIWEVHFHPKN-  235 (319)
T ss_pred             c---cccccchhhhCCccc-------------ccEEEEecCCCeEEEEEcccccc---hHHHHHHhhhhhhheeccCCC-
Confidence            1   111236666655542             46788889999999999987632   234567899999999999974 


Q ss_pred             CCccEEEEEecCCeEEEEEec
Q 022111          223 LPKSTIASASQDGTVVIWTCA  243 (302)
Q Consensus       223 ~~~~~l~s~s~D~~i~iwd~~  243 (302)
                        +..|+++++||.+--||..
T Consensus       236 --p~~Lft~sedGslw~wdas  254 (319)
T KOG4714|consen  236 --PEHLFTCSEDGSLWHWDAS  254 (319)
T ss_pred             --chheeEecCCCcEEEEcCC
Confidence              6889999999999999875

>KOG2695 consensus WD40 repeat protein [General function prediction only]

Probab=98.45  E-value=1.2e-06  Score=73.83  Aligned_cols=149  Identities=15%  Similarity=0.259  Sum_probs=99.4

Q ss_pred             EEeeCCCcEEEEeecCCCceEEEEecCcccCeEEEEeeCCCCCCEEEEEeCCCeEEEEEcCCCCc--eeEEEEecCCCCC
Q 022111           27 ATASSDSSIKIIGLSNSASQHLATLKGHRGPVWQVAWAHPKFGSILASCSYDGQVIIWKEGNQND--WTQAHTFNDHKSS  104 (302)
Q Consensus        27 ~s~~~d~~v~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~s~D~~i~iwd~~~~~~--~~~~~~~~~h~~~  104 (302)
                      ++.|.+..|-|-+++++..   ..|. -+..|.++.|..  .+++|.-|...|.|...|++..++  ..+.+.+. |...
T Consensus       228 fs~G~sqqv~L~nvetg~~---qsf~-sksDVfAlQf~~--s~nLv~~GcRngeI~~iDLR~rnqG~~~~a~rly-h~Ss  300 (425)
T KOG2695|consen  228 FSVGLSQQVLLTNVETGHQ---QSFQ-SKSDVFALQFAG--SDNLVFNGCRNGEIFVIDLRCRNQGNGWCAQRLY-HDSS  300 (425)
T ss_pred             ecccccceeEEEEeecccc---cccc-cchhHHHHHhcc--cCCeeEecccCCcEEEEEeeecccCCCcceEEEE-cCcc
Confidence            5667788888888866432   2343 456788899853  368999999999999999976532  12344454 8888


Q ss_pred             eeEEEecCCCCCcEEEEEecCCcEEEEEecCCCCe-eeeeecccCCCCeEEEEeCCCCCCCceeecccCCCceeEEEeeC
Q 022111          105 VNSIAWAPHELGLSLACGSSDGNISVFTATADGGW-DTTRIDQAHPVGVTSVSWAPAMAPGALVGLGLLDPVQKLASCGC  183 (302)
Q Consensus       105 i~~l~~~pd~~~~~l~sg~~d~~v~~~~~~~~~~~-~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~  183 (302)
                      |+++..-.. ....|.+.+.+|+|++||.+....- ..... .+|   |+..+..|..         ..+....++++|.
T Consensus       301 vtslq~Lq~-s~q~LmaS~M~gkikLyD~R~~K~~~~V~qY-eGH---vN~~a~l~~~---------v~~eeg~I~s~Gd  366 (425)
T KOG2695|consen  301 VTSLQILQF-SQQKLMASDMTGKIKLYDLRATKCKKSVMQY-EGH---VNLSAYLPAH---------VKEEEGSIFSVGD  366 (425)
T ss_pred             hhhhhhhcc-ccceEeeccCcCceeEeeehhhhcccceeee-ecc---cccccccccc---------cccccceEEEccC
Confidence            998875431 1457888999999999999854321 11222 255   2322222211         1122467889999


Q ss_pred             CCcEEEEEEecCc
Q 022111          184 DNTVKVWKMYNGI  196 (302)
Q Consensus       184 D~~v~iwd~~~~~  196 (302)
                      |...|||.++.+.
T Consensus       367 DcytRiWsl~~gh  379 (425)
T KOG2695|consen  367 DCYTRIWSLDSGH  379 (425)
T ss_pred             eeEEEEEecccCc
Confidence            9999999998774

>PLN02919 haloacid dehalogenase-like hydrolase family protein

Probab=98.44  E-value=0.0001  Score=73.93  Aligned_cols=215  Identities=12%  Similarity=0.102  Sum_probs=120.4

Q ss_pred             eeEEEEccCCCEEEEee-CCCcEEEEeecCCCceEEEEecC--c---------------ccCeEEEEeeCCCCCCEEEEE
Q 022111           14 VHDVAMDFYGKRLATAS-SDSSIKIIGLSNSASQHLATLKG--H---------------RGPVWQVAWAHPKFGSILASC   75 (302)
Q Consensus        14 v~~~~~s~~~~~l~s~~-~d~~v~lw~~~~~~~~~~~~~~~--h---------------~~~v~~v~~~~~~~~~~l~s~   75 (302)
                      ...+++++++..|+.+. ..+.|+++|+.++.   +.++.+  .               -..-+.++|++. ++.++++.
T Consensus       626 P~GIavd~~gn~LYVaDt~n~~Ir~id~~~~~---V~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~-~g~LyVad  701 (1057)
T PLN02919        626 PQGLAYNAKKNLLYVADTENHALREIDFVNET---VRTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPV-NEKVYIAM  701 (1057)
T ss_pred             CcEEEEeCCCCEEEEEeCCCceEEEEecCCCE---EEEEeccCcccCCCCCChhhhHhhcCCCeEEEEecC-CCeEEEEE
Confidence            46688888877665554 44678888875432   222211  0               011246888753 46788888


Q ss_pred             eCCCeEEEEEcCCCCceeEEEEec---------C------CCCCeeEEEecCCCCCcEEEEEecCCcEEEEEecCCCCee
Q 022111           76 SYDGQVIIWKEGNQNDWTQAHTFN---------D------HKSSVNSIAWAPHELGLSLACGSSDGNISVFTATADGGWD  140 (302)
Q Consensus        76 s~D~~i~iwd~~~~~~~~~~~~~~---------~------h~~~i~~l~~~pd~~~~~l~sg~~d~~v~~~~~~~~~~~~  140 (302)
                      +.++.|++||..++.    +..+.         +      .-.....++++|+. ..++++-+.++.|++||...... .
T Consensus       702 ~~~~~I~v~d~~~g~----v~~~~G~G~~~~~~g~~~~~~~~~~P~GIavspdG-~~LYVADs~n~~Irv~D~~tg~~-~  775 (1057)
T PLN02919        702 AGQHQIWEYNISDGV----TRVFSGDGYERNLNGSSGTSTSFAQPSGISLSPDL-KELYIADSESSSIRALDLKTGGS-R  775 (1057)
T ss_pred             CCCCeEEEEECCCCe----EEEEecCCccccCCCCccccccccCccEEEEeCCC-CEEEEEECCCCeEEEEECCCCcE-E
Confidence            899999999986542    11111         1      11234678999983 23556666778999999764321 1


Q ss_pred             eeeecccCCC-CeEEEEeCCCCCC------CceeecccCCCceeEEEeeCCCcEEEEEEecCcccccccc----------
Q 022111          141 TTRIDQAHPV-GVTSVSWAPAMAP------GALVGLGLLDPVQKLASCGCDNTVKVWKMYNGIWKMDCFP----------  203 (302)
Q Consensus       141 ~~~~~~~h~~-~v~~~~~~~~~~~------~~~~~~~~~~~~~~l~s~~~D~~v~iwd~~~~~~~~~~~~----------  203 (302)
                      ....  +... ......+......      ..-.++...+++..+++-+.++.|++||..++... ....          
T Consensus       776 ~~~g--g~~~~~~~l~~fG~~dG~g~~~~l~~P~Gvavd~dG~LYVADs~N~rIrviD~~tg~v~-tiaG~G~~G~~dG~  852 (1057)
T PLN02919        776 LLAG--GDPTFSDNLFKFGDHDGVGSEVLLQHPLGVLCAKDGQIYVADSYNHKIKKLDPATKRVT-TLAGTGKAGFKDGK  852 (1057)
T ss_pred             EEEe--cccccCcccccccCCCCchhhhhccCCceeeEeCCCcEEEEECCCCEEEEEECCCCeEE-EEeccCCcCCCCCc
Confidence            1000  0000 0000000000000      00011222334678888888999999998765211 0000          


Q ss_pred             ccccCCCceeEEEeeCCCCCCccEEEEEecCCeEEEEEeccC
Q 022111          204 ALQMHSDWVRSVAWAPNLGLPKSTIASASQDGTVVIWTCAKE  245 (302)
Q Consensus       204 ~~~~h~~~v~~v~~~p~~~~~~~~l~s~s~D~~i~iwd~~~~  245 (302)
                      ...+.-.....|+++|++    +.+++-+.++.|++||+.+.
T Consensus       853 ~~~a~l~~P~GIavd~dG----~lyVaDt~Nn~Irvid~~~~  890 (1057)
T PLN02919        853 ALKAQLSEPAGLALGENG----RLFVADTNNSLIRYLDLNKG  890 (1057)
T ss_pred             ccccccCCceEEEEeCCC----CEEEEECCCCEEEEEECCCC
Confidence            011122346789999985    67888889999999998753

>KOG4714 consensus Nucleoporin [Nuclear structure]

Probab=98.41  E-value=9.1e-07  Score=71.76  Aligned_cols=74  Identities=24%  Similarity=0.444  Sum_probs=60.4

Q ss_pred             cceeEEEEccCC-CEEEEeeCCCcEEEEeecCCCceEEEEecCcccCeEEEEeeCCCCCCEEEEEeCCCeEEEEEcC
Q 022111           12 DTVHDVAMDFYG-KRLATASSDSSIKIIGLSNSASQHLATLKGHRGPVWQVAWAHPKFGSILASCSYDGQVIIWKEG   87 (302)
Q Consensus        12 ~~v~~~~~s~~~-~~l~s~~~d~~v~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~s~D~~i~iwd~~   87 (302)
                      +.|++++-+|.. +.+++|+.||.+-|||..+.. -+...++.|+++++.+-|. |+++..|++|++||.+-.||..
T Consensus       180 ~~v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~~-~p~S~l~ahk~~i~eV~FH-pk~p~~Lft~sedGslw~wdas  254 (319)
T KOG4714|consen  180 DAVTALCSHPAQQHLVCCGTDDGIVGLWDARNVA-MPVSLLKAHKAEIWEVHFH-PKNPEHLFTCSEDGSLWHWDAS  254 (319)
T ss_pred             ccchhhhCCcccccEEEEecCCCeEEEEEccccc-chHHHHHHhhhhhhheecc-CCCchheeEecCCCcEEEEcCC
Confidence            348889988865 567788899999999986542 2344578999999999995 5678899999999999999875

>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=98.38  E-value=6.4e-06  Score=71.71  Aligned_cols=209  Identities=17%  Similarity=0.178  Sum_probs=131.3

Q ss_pred             cccCeEEEEeeCCCCCCEEEEEeCCCeEEEEEcCCCCceeEEEEecCCCCCeeEEEecCCCCCcEEEEEec-CCcEEEEE
Q 022111           54 HRGPVWQVAWAHPKFGSILASCSYDGQVIIWKEGNQNDWTQAHTFNDHKSSVNSIAWAPHELGLSLACGSS-DGNISVFT  132 (302)
Q Consensus        54 h~~~v~~v~~~~~~~~~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~h~~~i~~l~~~pd~~~~~l~sg~~-d~~v~~~~  132 (302)
                      |.+.|+.+.-.   ..+++.+++.||.++.|.-.......-+.-+..|...|.+++.+-+  +.++.|.+. |..+++||
T Consensus         8 hrd~i~hv~~t---ka~fiiqASlDGh~KFWkKs~isGvEfVKhFraHL~~I~sl~~S~d--g~L~~Sv~d~Dhs~KvfD   82 (558)
T KOG0882|consen    8 HRDVITHVFPT---KAKFIIQASLDGHKKFWKKSRISGVEFVKHFRAHLGVILSLAVSYD--GWLFRSVEDPDHSVKVFD   82 (558)
T ss_pred             ccceeeeEeee---hhheEEeeecchhhhhcCCCCccceeehhhhHHHHHHHHhhhcccc--ceeEeeccCcccceeEEE
Confidence            77777777532   3689999999999999975331112233445568899999998876  678888777 99999999


Q ss_pred             ecCCCCeeeeeecccCCCCeEEEEeCCCCCCCceeecccCCCceeEE-EeeCCCcEEEEEEecCccccccccccccCCCc
Q 022111          133 ATADGGWDTTRIDQAHPVGVTSVSWAPAMAPGALVGLGLLDPVQKLA-SCGCDNTVKVWKMYNGIWKMDCFPALQMHSDW  211 (302)
Q Consensus       133 ~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~-s~~~D~~v~iwd~~~~~~~~~~~~~~~~h~~~  211 (302)
                      +..-.......+. --+   ..+.|....  +.        .-..|+ +.-.++.+.|+|-......  ....-..|..+
T Consensus        83 vEn~DminmiKL~-~lP---g~a~wv~sk--Gd--------~~s~IAVs~~~sg~i~VvD~~~d~~q--~~~fkklH~sP  146 (558)
T KOG0882|consen   83 VENFDMINMIKLV-DLP---GFAEWVTSK--GD--------KISLIAVSLFKSGKIFVVDGFGDFCQ--DGYFKKLHFSP  146 (558)
T ss_pred             eeccchhhhcccc-cCC---CceEEecCC--CC--------eeeeEEeecccCCCcEEECCcCCcCc--cceecccccCc
Confidence            8743211111111 001   122332211  10        011233 3345778999987654211  11122459999


Q ss_pred             eeEEEeeCCCCCCccEEEEEecCCeEEEEEeccCCcceeeee---------ecc---CCCcEEEEEEccCCCEEEEecCC
Q 022111          212 VRSVAWAPNLGLPKSTIASASQDGTVVIWTCAKEGEQWEGRV---------LKD---FKTPVWSVSWSLTGNLLAVADAN  279 (302)
Q Consensus       212 v~~v~~~p~~~~~~~~l~s~s~D~~i~iwd~~~~~~~~~~~~---------~~~---~~~~v~~~~~spdg~~la~~~~d  279 (302)
                      |.++.++|.+    ..++|....|-|.-|.....-.....++         +-+   -+....++.|+|+|..++.-+.|
T Consensus       147 V~~i~y~qa~----Ds~vSiD~~gmVEyWs~e~~~qfPr~~l~~~~K~eTdLy~f~K~Kt~pts~Efsp~g~qistl~~D  222 (558)
T KOG0882|consen  147 VKKIRYNQAG----DSAVSIDISGMVEYWSAEGPFQFPRTNLNFELKHETDLYGFPKAKTEPTSFEFSPDGAQISTLNPD  222 (558)
T ss_pred             eEEEEeeccc----cceeeccccceeEeecCCCcccCccccccccccccchhhcccccccCccceEEccccCcccccCcc
Confidence            9999999985    6788998899999998763100000011         111   13456789999999999988888


Q ss_pred             -ceEEeeec
Q 022111          280 -NVTLWKEA  287 (302)
Q Consensus       280 -~i~~w~~~  287 (302)
                       .|+++...
T Consensus       223 rkVR~F~~K  231 (558)
T KOG0882|consen  223 RKVRGFVFK  231 (558)
T ss_pred             cEEEEEEec
Confidence             79888764

>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal

Probab=98.37  E-value=0.00089  Score=55.51  Aligned_cols=203  Identities=16%  Similarity=0.222  Sum_probs=111.1

Q ss_pred             CCCEEEEEeCCCeEEEEEcCCCCce--eEEEEecCCCCCeeEEEecCCCCCcEEEEEecCCcEEEEEecCCCCeeeeeec
Q 022111           68 FGSILASCSYDGQVIIWKEGNQNDW--TQAHTFNDHKSSVNSIAWAPHELGLSLACGSSDGNISVFTATADGGWDTTRID  145 (302)
Q Consensus        68 ~~~~l~s~s~D~~i~iwd~~~~~~~--~~~~~~~~h~~~i~~l~~~pd~~~~~l~sg~~d~~v~~~~~~~~~~~~~~~~~  145 (302)
                      +|++||. -.|..|.|-..++.-..  ...+.-+.....-+-++||||  +.+||.+...|+|++||+....   +..+.
T Consensus         8 ~Gk~lAi-~qd~~iEiRsa~Ddf~si~~kcqVpkD~~PQWRkl~WSpD--~tlLa~a~S~G~i~vfdl~g~~---lf~I~   81 (282)
T PF15492_consen    8 DGKLLAI-LQDQCIEIRSAKDDFSSIIGKCQVPKDPNPQWRKLAWSPD--CTLLAYAESTGTIRVFDLMGSE---LFVIP   81 (282)
T ss_pred             CCcEEEE-EeccEEEEEeccCCchheeEEEecCCCCCchheEEEECCC--CcEEEEEcCCCeEEEEecccce---eEEcC
Confidence            3666654 45666666554432110  111222233445678999999  6799999999999999986321   11221


Q ss_pred             ccC------CCCeEEEEeCCCCCCCceeecccCCC-ceeEEEeeCCCcEEEEEEecCc-cccccccccc--c-CCCceeE
Q 022111          146 QAH------PVGVTSVSWAPAMAPGALVGLGLLDP-VQKLASCGCDNTVKVWKMYNGI-WKMDCFPALQ--M-HSDWVRS  214 (302)
Q Consensus       146 ~~h------~~~v~~~~~~~~~~~~~~~~~~~~~~-~~~l~s~~~D~~v~iwd~~~~~-~~~~~~~~~~--~-h~~~v~~  214 (302)
                      ..+      ...|..+.|-+... .        .. ...|+.-..+|.++=|-+..+. .......+|.  . +...|++
T Consensus        82 p~~~~~~d~~~Aiagl~Fl~~~~-s--------~~ws~ELlvi~Y~G~L~Sy~vs~gt~q~y~e~hsfsf~~~yp~Gi~~  152 (282)
T PF15492_consen   82 PAMSFPGDLSDAIAGLIFLEYKK-S--------AQWSYELLVINYRGQLRSYLVSVGTNQGYQENHSFSFSSHYPHGINS  152 (282)
T ss_pred             cccccCCccccceeeeEeecccc-c--------cccceeEEEEeccceeeeEEEEcccCCcceeeEEEEecccCCCceeE
Confidence            111      11233444432110 0        00 2345556667777766653221 1112222332  2 4678999


Q ss_pred             EEeeCCCCCCccEEEEEecCC----------eEEEEEeccCC----------ccee--------eeee--------ccCC
Q 022111          215 VAWAPNLGLPKSTIASASQDG----------TVVIWTCAKEG----------EQWE--------GRVL--------KDFK  258 (302)
Q Consensus       215 v~~~p~~~~~~~~l~s~s~D~----------~i~iwd~~~~~----------~~~~--------~~~~--------~~~~  258 (302)
                      +.|+|..   .-.+++|.+..          -+.-|.+-...          +...        .++.        ....
T Consensus       153 ~vy~p~h---~LLlVgG~~~~~~~~s~a~~~GLtaWRiL~~~Pyyk~v~~~~~~~~~~~~~~~~~~~~~~~~fs~~~~~~  229 (282)
T PF15492_consen  153 AVYHPKH---RLLLVGGCEQNQDGMSKASSCGLTAWRILSDSPYYKQVTSSEDDITASSKRRGLLRIPSFKFFSRQGQEQ  229 (282)
T ss_pred             EEEcCCC---CEEEEeccCCCCCccccccccCceEEEEcCCCCcEEEccccCccccccccccceeeccceeeeeccccCC
Confidence            9999984   23455554432          25667653210          0000        0000        1123


Q ss_pred             CcEEEEEEccCCCEEEEecCC-ceEEeeecC
Q 022111          259 TPVWSVSWSLTGNLLAVADAN-NVTLWKEAV  288 (302)
Q Consensus       259 ~~v~~~~~spdg~~la~~~~d-~i~~w~~~~  288 (302)
                      ..|..|+.||||+.||+.+-. .|.||++..
T Consensus       230 d~i~kmSlSPdg~~La~ih~sG~lsLW~iPs  260 (282)
T PF15492_consen  230 DGIFKMSLSPDGSLLACIHFSGSLSLWEIPS  260 (282)
T ss_pred             CceEEEEECCCCCEEEEEEcCCeEEEEecCc
Confidence            568899999999999999877 799999743

>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]

Probab=98.34  E-value=0.00041  Score=62.34  Aligned_cols=95  Identities=17%  Similarity=0.287  Sum_probs=58.8

Q ss_pred             CCcEEEEEEecCccccccccccccCCCceeEEEeeCCCCCCccEEEEE---ecCCeEEEEEeccCCcceeeeeeccCCCc
Q 022111          184 DNTVKVWKMYNGIWKMDCFPALQMHSDWVRSVAWAPNLGLPKSTIASA---SQDGTVVIWTCAKEGEQWEGRVLKDFKTP  260 (302)
Q Consensus       184 D~~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~l~s~---s~D~~i~iwd~~~~~~~~~~~~~~~~~~~  260 (302)
                      -.++.+|-+.+...+...+..+.  +..-+.|.|+|.|    .+++.+   |..|.+..+|..-.....  .-..+| ..
T Consensus       469 k~tvsfY~~e~~~~~~~lVk~~d--k~~~N~vfwsPkG----~fvvva~l~s~~g~l~F~D~~~a~~k~--~~~~eh-~~  539 (698)
T KOG2314|consen  469 KNTVSFYAVETNIKKPSLVKELD--KKFANTVFWSPKG----RFVVVAALVSRRGDLEFYDTDYADLKD--TASPEH-FA  539 (698)
T ss_pred             ccceeEEEeecCCCchhhhhhhc--ccccceEEEcCCC----cEEEEEEecccccceEEEecchhhhhh--ccCccc-cc
Confidence            45788898875433334444443  2345789999996    566655   457889999976311110  111222 23


Q ss_pred             EEEEEEccCCCEEEEecC------C-ceEEeeec
Q 022111          261 VWSVSWSLTGNLLAVADA------N-NVTLWKEA  287 (302)
Q Consensus       261 v~~~~~spdg~~la~~~~------d-~i~~w~~~  287 (302)
                      ...+.|.|.|+|++++++      | +-+||+..
T Consensus       540 at~veWDPtGRYvvT~ss~wrhk~d~GYri~tfq  573 (698)
T KOG2314|consen  540 ATEVEWDPTGRYVVTSSSSWRHKVDNGYRIFTFQ  573 (698)
T ss_pred             cccceECCCCCEEEEeeehhhhccccceEEEEee
Confidence            567899999999988854      3 56777653

>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats

Probab=98.33  E-value=0.00082  Score=60.99  Aligned_cols=74  Identities=19%  Similarity=0.270  Sum_probs=57.7

Q ss_pred             cCCCCeEEEEeCCCCCCCceeecccCCCceeEEEeeCCCcEEEEEEecCccccccccccccCCCceeEEEeeCCCCCCcc
Q 022111          147 AHPVGVTSVSWAPAMAPGALVGLGLLDPVQKLASCGCDNTVKVWKMYNGIWKMDCFPALQMHSDWVRSVAWAPNLGLPKS  226 (302)
Q Consensus       147 ~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~D~~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~  226 (302)
                      ..+..+.+++++|+.              +.|+.|+.||.|.+||...+...      +....-..+.++|+|++    .
T Consensus       257 pL~s~v~~ca~sp~E--------------~kLvlGC~DgSiiLyD~~~~~t~------~~ka~~~P~~iaWHp~g----a  312 (545)
T PF11768_consen  257 PLPSQVICCARSPSE--------------DKLVLGCEDGSIILYDTTRGVTL------LAKAEFIPTLIAWHPDG----A  312 (545)
T ss_pred             ecCCcceEEecCccc--------------ceEEEEecCCeEEEEEcCCCeee------eeeecccceEEEEcCCC----c
Confidence            456678888888864              78999999999999998765321      12233446889999996    7


Q ss_pred             EEEEEecCCeEEEEEecc
Q 022111          227 TIASASQDGTVVIWTCAK  244 (302)
Q Consensus       227 ~l~s~s~D~~i~iwd~~~  244 (302)
                      .|+.|+.-|.|.+||+.-
T Consensus       313 i~~V~s~qGelQ~FD~AL  330 (545)
T PF11768_consen  313 IFVVGSEQGELQCFDMAL  330 (545)
T ss_pred             EEEEEcCCceEEEEEeec
Confidence            899999999999999854

>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]

Probab=98.32  E-value=0.00011  Score=65.12  Aligned_cols=237  Identities=15%  Similarity=0.186  Sum_probs=139.1

Q ss_pred             cceeEEEEccCCCEEEEeeCCCcEEEEeecCCCceEEEEecCcccCeEEEEeeCCCCCCEEEEEeCCCe-----------
Q 022111           12 DTVHDVAMDFYGKRLATASSDSSIKIIGLSNSASQHLATLKGHRGPVWQVAWAHPKFGSILASCSYDGQ-----------   80 (302)
Q Consensus        12 ~~v~~~~~s~~~~~l~s~~~d~~v~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~s~D~~-----------   80 (302)
                      -++..+++||.|.+|++.-. ..|.+|+-...  ..+..+. |. .|..+.|+|.  +++|+|-+....           
T Consensus        33 ~p~~~~~~SP~G~~l~~~~~-~~V~~~~g~~~--~~l~~~~-~~-~V~~~~fSP~--~kYL~tw~~~pi~~pe~e~sp~~  105 (561)
T COG5354          33 WPVAYVSESPLGTYLFSEHA-AGVECWGGPSK--AKLVRFR-HP-DVKYLDFSPN--EKYLVTWSREPIIEPEIEISPFT  105 (561)
T ss_pred             cchhheeecCcchheehhhc-cceEEccccch--hheeeee-cC-CceecccCcc--cceeeeeccCCccChhhccCCcc
Confidence            46778899999999987644 45889976443  2344443 43 5888999874  899999877555           


Q ss_pred             ----EEEEEcCCCCceeEEEEecCCCCC--ee-EEEecCCCCCcEEEEEecCCcEEEEEecCCCCeeeeeecccCCCCeE
Q 022111           81 ----VIIWKEGNQNDWTQAHTFNDHKSS--VN-SIAWAPHELGLSLACGSSDGNISVFTATADGGWDTTRIDQAHPVGVT  153 (302)
Q Consensus        81 ----i~iwd~~~~~~~~~~~~~~~h~~~--i~-~l~~~pd~~~~~l~sg~~d~~v~~~~~~~~~~~~~~~~~~~h~~~v~  153 (302)
                          +.+||..++   ..+..+.....+  .. -+.|+-++.  ++|-. ....+.++++...  .....+.......+.
T Consensus       106 ~~n~~~vwd~~sg---~iv~sf~~~~q~~~~Wp~~k~s~~D~--y~ARv-v~~sl~i~e~t~n--~~~~p~~~lr~~gi~  177 (561)
T COG5354         106 SKNNVFVWDIASG---MIVFSFNGISQPYLGWPVLKFSIDDK--YVARV-VGSSLYIHEITDN--IEEHPFKNLRPVGIL  177 (561)
T ss_pred             ccCceeEEeccCc---eeEeeccccCCcccccceeeeeecch--hhhhh-ccCeEEEEecCCc--cccCchhhcccccee
Confidence                899998775   355566655544  33 566776632  44433 3457888886321  222222111235678


Q ss_pred             EEEeCCCCCCCceeecccCCCceeEEE-----eeCCCcEEEEEEecCccccccccccccCCCceeEEEeeCCCCCCccEE
Q 022111          154 SVSWAPAMAPGALVGLGLLDPVQKLAS-----CGCDNTVKVWKMYNGIWKMDCFPALQMHSDWVRSVAWAPNLGLPKSTI  228 (302)
Q Consensus       154 ~~~~~~~~~~~~~~~~~~~~~~~~l~s-----~~~D~~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~l  228 (302)
                      ...|+|.+. +           ..||.     .+.+.+++||.+..+...  ...+|  .+..--.+.|++.+.    +|
T Consensus       178 dFsisP~~n-~-----------~~la~~tPEk~~kpa~~~i~sIp~~s~l--~tk~l--fk~~~~qLkW~~~g~----~l  237 (561)
T COG5354         178 DFSISPEGN-H-----------DELAYWTPEKLNKPAMVRILSIPKNSVL--VTKNL--FKVSGVQLKWQVLGK----YL  237 (561)
T ss_pred             eEEecCCCC-C-----------ceEEEEccccCCCCcEEEEEEccCCCee--eeeee--EeecccEEEEecCCc----eE
Confidence            888888631 1           11221     355778899888643110  00111  111113467777652    22


Q ss_pred             EEEe-----------cCCeEEEEEeccCCcceeeeeeccCCCcEEEEEEccCCCEEEEecC--C-ceEEeeec
Q 022111          229 ASAS-----------QDGTVVIWTCAKEGEQWEGRVLKDFKTPVWSVSWSLTGNLLAVADA--N-NVTLWKEA  287 (302)
Q Consensus       229 ~s~s-----------~D~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~la~~~~--d-~i~~w~~~  287 (302)
                      +.--           ...++.|.++....    .....+..++|-...|+|.++.+++.++  . .+.+++..
T Consensus       238 l~l~~t~~ksnKsyfgesnLyl~~~~e~~----i~V~~~~~~pVhdf~W~p~S~~F~vi~g~~pa~~s~~~lr  306 (561)
T COG5354         238 LVLVMTHTKSNKSYFGESNLYLLRITERS----IPVEKDLKDPVHDFTWEPLSSRFAVISGYMPASVSVFDLR  306 (561)
T ss_pred             EEEEEEeeecccceeccceEEEEeecccc----cceeccccccceeeeecccCCceeEEecccccceeecccc
Confidence            2211           12457777765321    1222356789999999999988877652  3 56666653

>PRK04043 tolB translocation protein TolB; Provisional

Probab=98.29  E-value=0.0027  Score=57.55  Aligned_cols=194  Identities=10%  Similarity=0.035  Sum_probs=101.8

Q ss_pred             CeEEEEeeCCCCCC-EEEEEeCC---CeEEEEEcCCCCceeEEEEecCCCCCeeEEEecCCCCCcEE-EEEecCC--cEE
Q 022111           57 PVWQVAWAHPKFGS-ILASCSYD---GQVIIWKEGNQNDWTQAHTFNDHKSSVNSIAWAPHELGLSL-ACGSSDG--NIS  129 (302)
Q Consensus        57 ~v~~v~~~~~~~~~-~l~s~s~D---~~i~iwd~~~~~~~~~~~~~~~h~~~i~~l~~~pd~~~~~l-~sg~~d~--~v~  129 (302)
                      .+..-+|+|+  |+ +++..+.+   ..|.++|+.++..    ..+....+.....+|+||  |..+ .+.+.++  .|.
T Consensus       189 ~~~~p~wSpD--G~~~i~y~s~~~~~~~Iyv~dl~tg~~----~~lt~~~g~~~~~~~SPD--G~~la~~~~~~g~~~Iy  260 (419)
T PRK04043        189 LNIFPKWANK--EQTAFYYTSYGERKPTLYKYNLYTGKK----EKIASSQGMLVVSDVSKD--GSKLLLTMAPKGQPDIY  260 (419)
T ss_pred             CeEeEEECCC--CCcEEEEEEccCCCCEEEEEECCCCcE----EEEecCCCcEEeeEECCC--CCEEEEEEccCCCcEEE
Confidence            6678899875  66 35544443   4577777765432    223234455667889998  4444 4444444  455


Q ss_pred             EEEecCCCCeeeeeecccCCCCeEEEEeCCCCCCCceeecccCCCceeEEEeeCCC--cEEEEEEecCcccccccccccc
Q 022111          130 VFTATADGGWDTTRIDQAHPVGVTSVSWAPAMAPGALVGLGLLDPVQKLASCGCDN--TVKVWKMYNGIWKMDCFPALQM  207 (302)
Q Consensus       130 ~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~D~--~v~iwd~~~~~~~~~~~~~~~~  207 (302)
                      ++++... ..  .++. .+........|+|++             ...+++....+  .|.+.|+.++...  .+ ++.+
T Consensus       261 ~~dl~~g-~~--~~LT-~~~~~d~~p~~SPDG-------------~~I~F~Sdr~g~~~Iy~~dl~~g~~~--rl-t~~g  320 (419)
T PRK04043        261 LYDTNTK-TL--TQIT-NYPGIDVNGNFVEDD-------------KRIVFVSDRLGYPNIFMKKLNSGSVE--QV-VFHG  320 (419)
T ss_pred             EEECCCC-cE--EEcc-cCCCccCccEECCCC-------------CEEEEEECCCCCceEEEEECCCCCeE--eC-ccCC
Confidence            5565432 22  2222 122223345798875             23444443444  4666666655321  11 1122


Q ss_pred             CCCceeEEEeeCCCCCCccEEEEEecC-------C--eEEEEEeccCCcceeeeeeccCCCcEEEEEEccCCCEEEEecC
Q 022111          208 HSDWVRSVAWAPNLGLPKSTIASASQD-------G--TVVIWTCAKEGEQWEGRVLKDFKTPVWSVSWSLTGNLLAVADA  278 (302)
Q Consensus       208 h~~~v~~v~~~p~~~~~~~~l~s~s~D-------~--~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~la~~~~  278 (302)
                      .  .  ...|+||+    +.|+-.+..       +  .|.+.|+....  .  +.+... ......+|||||+.|+....
T Consensus       321 ~--~--~~~~SPDG----~~Ia~~~~~~~~~~~~~~~~I~v~d~~~g~--~--~~LT~~-~~~~~p~~SPDG~~I~f~~~  387 (419)
T PRK04043        321 K--N--NSSVSTYK----NYIVYSSRETNNEFGKNTFNLYLISTNSDY--I--RRLTAN-GVNQFPRFSSDGGSIMFIKY  387 (419)
T ss_pred             C--c--CceECCCC----CEEEEEEcCCCcccCCCCcEEEEEECCCCC--e--EECCCC-CCcCCeEECCCCCEEEEEEc
Confidence            2  1  24899996    555555443       2  45555654432  1  122221 12235789999998877754


Q ss_pred             C--ceEEeeecCCce
Q 022111          279 N--NVTLWKEAVDGE  291 (302)
Q Consensus       279 d--~i~~w~~~~~~~  291 (302)
                      .  .-.|+-+..+|.
T Consensus       388 ~~~~~~L~~~~l~g~  402 (419)
T PRK04043        388 LGNQSALGIIRLNYN  402 (419)
T ss_pred             cCCcEEEEEEecCCC
Confidence            3  455666655664

>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]

Probab=98.29  E-value=2.7e-05  Score=73.39  Aligned_cols=185  Identities=13%  Similarity=0.148  Sum_probs=118.6

Q ss_pred             CCEEEEeeCCCcEEEEeecCCCceEEEEecCcccCeEEEEeeCCCCCCEEEEEeCCCeEEEEEcCCCCceeEEEEecCCC
Q 022111           23 GKRLATASSDSSIKIIGLSNSASQHLATLKGHRGPVWQVAWAHPKFGSILASCSYDGQVIIWKEGNQNDWTQAHTFNDHK  102 (302)
Q Consensus        23 ~~~l~s~~~d~~v~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~h~  102 (302)
                      +..+.-|+.-..+..+|+...........  -...|.-++.+    ++.++.|...|+|.+-|.++.   ..++++..|.
T Consensus       147 ~~~~i~Gg~Q~~li~~Dl~~~~e~r~~~v--~a~~v~imR~N----nr~lf~G~t~G~V~LrD~~s~---~~iht~~aHs  217 (1118)
T KOG1275|consen  147 PSTLIMGGLQEKLIHIDLNTEKETRTTNV--SASGVTIMRYN----NRNLFCGDTRGTVFLRDPNSF---ETIHTFDAHS  217 (1118)
T ss_pred             Ccceeecchhhheeeeecccceeeeeeec--cCCceEEEEec----CcEEEeecccceEEeecCCcC---ceeeeeeccc
Confidence            34555566556666677654322122222  12247778763    688999999999999998664   4788999999


Q ss_pred             CCeeEEEecCCCCCcEEEEEec---------CCcEEEEEecCCCCeeeeeecccCCCCeEEEEeCCCCCCCceeecccCC
Q 022111          103 SSVNSIAWAPHELGLSLACGSS---------DGNISVFTATADGGWDTTRIDQAHPVGVTSVSWAPAMAPGALVGLGLLD  173 (302)
Q Consensus       103 ~~i~~l~~~pd~~~~~l~sg~~---------d~~v~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~  173 (302)
                      +.|.+++..    |..|++|+.         |.-|++||++......+..+.   .. -.-+.|.|.-            
T Consensus       218 ~siSDfDv~----GNlLitCG~S~R~~~l~~D~FvkVYDLRmmral~PI~~~---~~-P~flrf~Psl------------  277 (1118)
T KOG1275|consen  218 GSISDFDVQ----GNLLITCGYSMRRYNLAMDPFVKVYDLRMMRALSPIQFP---YG-PQFLRFHPSL------------  277 (1118)
T ss_pred             cceeeeecc----CCeEEEeecccccccccccchhhhhhhhhhhccCCcccc---cC-chhhhhcccc------------
Confidence            999999875    557888874         556788998754332222211   11 1223344432            


Q ss_pred             CceeEEEeeCCCcEEEEEEecCccccccccccccCCCceeEEEeeCCCCCCccEEEEEecCCeEEEEE
Q 022111          174 PVQKLASCGCDNTVKVWKMYNGIWKMDCFPALQMHSDWVRSVAWAPNLGLPKSTIASASQDGTVVIWT  241 (302)
Q Consensus       174 ~~~~l~s~~~D~~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~l~s~s~D~~i~iwd  241 (302)
                       ..+++.++..|...+-|..+-........-+..-...+..+++++++    +.+|-|..+|.|.+|-
T Consensus       278 -~t~~~V~S~sGq~q~vd~~~lsNP~~~~~~v~p~~s~i~~fDiSsn~----~alafgd~~g~v~~wa  340 (1118)
T KOG1275|consen  278 -TTRLAVTSQSGQFQFVDTATLSNPPAGVKMVNPNGSGISAFDISSNG----DALAFGDHEGHVNLWA  340 (1118)
T ss_pred             -cceEEEEecccceeeccccccCCCccceeEEccCCCcceeEEecCCC----ceEEEecccCcEeeec
Confidence             25788888889999988332111111111122234558899999985    7899999999999997

>KOG2041 consensus WD40 repeat protein [General function prediction only]

Probab=98.23  E-value=0.00015  Score=66.87  Aligned_cols=252  Identities=16%  Similarity=0.234  Sum_probs=147.1

Q ss_pred             cccccccccceeEEEEccCCCEEEEeeCCCcEEEEeecCCCceEEEEec-CcccCeEEEEeeCCCCCCEEEEEeCCCeEE
Q 022111            4 QKIETGHEDTVHDVAMDFYGKRLATASSDSSIKIIGLSNSASQHLATLK-GHRGPVWQVAWAHPKFGSILASCSYDGQVI   82 (302)
Q Consensus         4 ~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~lw~~~~~~~~~~~~~~-~h~~~v~~v~~~~~~~~~~l~s~s~D~~i~   82 (302)
                      .|++.||...|.-+.|+.+.+.|-+...+|.|.+|-+-.+..- -..+. ..+.-|.+++|..  +|..++.+-+||.|.
T Consensus        64 NQtLeGH~~sV~vvTWNe~~QKLTtSDt~GlIiVWmlykgsW~-EEMiNnRnKSvV~SmsWn~--dG~kIcIvYeDGavI  140 (1189)
T KOG2041|consen   64 NQTLEGHNASVMVVTWNENNQKLTTSDTSGLIIVWMLYKGSWC-EEMINNRNKSVVVSMSWNL--DGTKICIVYEDGAVI  140 (1189)
T ss_pred             hhhhccCcceEEEEEeccccccccccCCCceEEEEeeecccHH-HHHhhCcCccEEEEEEEcC--CCcEEEEEEccCCEE
Confidence            4678899999999999999999999999999999988554321 11111 2345578999975  489999999999998


Q ss_pred             EEEcCCCCceeEEEEecCCCCCeeEEEecCCCCCcEEEEEecCCcEEEEEecCCCCe----e----eeeecccCCCCeEE
Q 022111           83 IWKEGNQNDWTQAHTFNDHKSSVNSIAWAPHELGLSLACGSSDGNISVFTATADGGW----D----TTRIDQAHPVGVTS  154 (302)
Q Consensus        83 iwd~~~~~~~~~~~~~~~h~~~i~~l~~~pd~~~~~l~sg~~d~~v~~~~~~~~~~~----~----~~~~~~~h~~~v~~  154 (302)
                      +=.+..+.-|.  +.+++.  ....+.|++|.  ..+..+-..|.+.+||....-..    +    ..-.....+..+..
T Consensus       141 VGsvdGNRIwg--KeLkg~--~l~hv~ws~D~--~~~Lf~~ange~hlydnqgnF~~Kl~~~c~Vn~tg~~s~~~~kia~  214 (1189)
T KOG2041|consen  141 VGSVDGNRIWG--KELKGQ--LLAHVLWSEDL--EQALFKKANGETHLYDNQGNFERKLEKDCEVNGTGIFSNFPTKIAE  214 (1189)
T ss_pred             EEeeccceecc--hhcchh--eccceeecccH--HHHHhhhcCCcEEEecccccHHHhhhhceEEeeeeeecCCCccccc
Confidence            86664432121  122221  12467899983  45566666789999986421000    0    00000011223455


Q ss_pred             EEeCCCCCCCceeecccCCCceeEEEeeCCCcEEEEEEecCccccccccccccCCCceeEEEeeCCCCCCccEEEEEecC
Q 022111          155 VSWAPAMAPGALVGLGLLDPVQKLASCGCDNTVKVWKMYNGIWKMDCFPALQMHSDWVRSVAWAPNLGLPKSTIASASQD  234 (302)
Q Consensus       155 ~~~~~~~~~~~~~~~~~~~~~~~l~s~~~D~~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~l~s~s~D  234 (302)
                      +.|......      ..-++--.|+.|-..|.+.|-.-.+..     .+.+..-.-.|....|+|+|    ..||.++.|
T Consensus       215 i~w~~g~~~------~v~pdrP~lavcy~nGr~QiMR~eND~-----~Pvv~dtgm~~vgakWnh~G----~vLAvcG~~  279 (1189)
T KOG2041|consen  215 IEWNTGPYQ------PVPPDRPRLAVCYANGRMQIMRSENDP-----EPVVVDTGMKIVGAKWNHNG----AVLAVCGND  279 (1189)
T ss_pred             eeeccCccc------cCCCCCCEEEEEEcCceehhhhhcCCC-----CCeEEecccEeecceecCCC----cEEEEccCc
Confidence            666432110      011223478888888888775432211     11111112447889999996    778888776


Q ss_pred             Ce---------EEEEEeccCCcceeeeeeccCCCcEEEEEEccCCCEEEEecCCceEE
Q 022111          235 GT---------VVIWTCAKEGEQWEGRVLKDFKTPVWSVSWSLTGNLLAVADANNVTL  283 (302)
Q Consensus       235 ~~---------i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~la~~~~d~i~~  283 (302)
                      ..         |.++..-.   . ....++-....|.+++|--.|-.+|.|-+..|.+
T Consensus       280 ~da~~~~d~n~v~Fysp~G---~-i~gtlkvpg~~It~lsWEg~gLriA~Avdsfiyf  333 (1189)
T KOG2041|consen  280 SDADEPTDSNKVHFYSPYG---H-IVGTLKVPGSCITGLSWEGTGLRIAIAVDSFIYF  333 (1189)
T ss_pred             ccccCccccceEEEeccch---h-heEEEecCCceeeeeEEcCCceEEEEEecceEEE
Confidence            42         22221100   0 0111223345688999988887777774434444

>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]

Probab=98.23  E-value=0.00072  Score=60.75  Aligned_cols=216  Identities=15%  Similarity=0.294  Sum_probs=125.8

Q ss_pred             cccceeEEEEccCC--CEEE-----EeeCCCcEEEEeecCCC-ceE--EEEecCcccCeEEEEeeCCCCCC-E--EEEEe
Q 022111           10 HEDTVHDVAMDFYG--KRLA-----TASSDSSIKIIGLSNSA-SQH--LATLKGHRGPVWQVAWAHPKFGS-I--LASCS   76 (302)
Q Consensus        10 h~~~v~~~~~s~~~--~~l~-----s~~~d~~v~lw~~~~~~-~~~--~~~~~~h~~~v~~v~~~~~~~~~-~--l~s~s   76 (302)
                      |...|+.+.+||-+  .++|     +.|.=..||||...... .+.  .++|- -.+.| .+.|++-  |+ +  |++..
T Consensus       164 ~~~~i~~f~lSpgp~~~~vAvyvPe~kGaPa~vri~~~~~~~~~~~~a~ksFF-kadkv-qm~WN~~--gt~LLvLastd  239 (566)
T KOG2315|consen  164 SVSGITMLSLSPGPEPPFVAVYVPEKKGAPASVRIYKYPEEGQHQPVANKSFF-KADKV-QMKWNKL--GTALLVLASTD  239 (566)
T ss_pred             eccceeeEEecCCCCCceEEEEccCCCCCCcEEEEeccccccccchhhhcccc-cccee-EEEeccC--CceEEEEEEEe
Confidence            55678888888863  3444     34556679999875211 111  12221 11223 4667542  33 2  33333


Q ss_pred             CCC---------eEEEEEcCCCCceeEEEEecCCCCCeeEEEecCCCCCcEEEEEecCCcEEEEEecCCCCeeeeeeccc
Q 022111           77 YDG---------QVIIWKEGNQNDWTQAHTFNDHKSSVNSIAWAPHELGLSLACGSSDGNISVFTATADGGWDTTRIDQA  147 (302)
Q Consensus        77 ~D~---------~i~iwd~~~~~~~~~~~~~~~h~~~i~~l~~~pd~~~~~l~sg~~d~~v~~~~~~~~~~~~~~~~~~~  147 (302)
                      -|+         ++.+.++...   ...-.+. -+++|-++.|+|+...--++.|-+--.+.+||++..   ....+.  
T Consensus       240 VDktn~SYYGEq~Lyll~t~g~---s~~V~L~-k~GPVhdv~W~~s~~EF~VvyGfMPAkvtifnlr~~---~v~df~--  310 (566)
T KOG2315|consen  240 VDKTNASYYGEQTLYLLATQGE---SVSVPLL-KEGPVHDVTWSPSGREFAVVYGFMPAKVTIFNLRGK---PVFDFP--  310 (566)
T ss_pred             ecCCCccccccceEEEEEecCc---eEEEecC-CCCCceEEEECCCCCEEEEEEecccceEEEEcCCCC---EeEeCC--
Confidence            344         5666655421   1222222 479999999999843234566677788999988632   122322  


Q ss_pred             CCCCeEEEEeCCCCCCCceeecccCCCceeEEEeeCC---CcEEEEEEecCccccccccccccCCCceeEEEeeCCCCCC
Q 022111          148 HPVGVTSVSWAPAMAPGALVGLGLLDPVQKLASCGCD---NTVKVWKMYNGIWKMDCFPALQMHSDWVRSVAWAPNLGLP  224 (302)
Q Consensus       148 h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~D---~~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~  224 (302)
                       +.+=+++-|+|.+              ..|+-+|.+   |.+-|||+.+.    +++..+..-.  -+-+.|+|||   
T Consensus       311 -egpRN~~~fnp~g--------------~ii~lAGFGNL~G~mEvwDv~n~----K~i~~~~a~~--tt~~eW~PdG---  366 (566)
T KOG2315|consen  311 -EGPRNTAFFNPHG--------------NIILLAGFGNLPGDMEVWDVPNR----KLIAKFKAAN--TTVFEWSPDG---  366 (566)
T ss_pred             -CCCccceEECCCC--------------CEEEEeecCCCCCceEEEeccch----hhccccccCC--ceEEEEcCCC---
Confidence             3445678899874              566666554   57999999863    3344443222  2446899996   


Q ss_pred             ccEEEEEec------CCeEEEEEeccCCcceeeeeeccCCCcEEEEEEcc
Q 022111          225 KSTIASASQ------DGTVVIWTCAKEGEQWEGRVLKDFKTPVWSVSWSL  268 (302)
Q Consensus       225 ~~~l~s~s~------D~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp  268 (302)
                       .+|+|++.      |..++||+.....     .....++...+.+.|-|
T Consensus       367 -e~flTATTaPRlrvdNg~KiwhytG~~-----l~~~~f~sEL~qv~W~P  410 (566)
T KOG2315|consen  367 -EYFLTATTAPRLRVDNGIKIWHYTGSL-----LHEKMFKSELLQVEWRP  410 (566)
T ss_pred             -cEEEEEeccccEEecCCeEEEEecCce-----eehhhhhHhHhheeeee
Confidence             66777753      6789999975320     11134444688888876

>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]

Probab=98.19  E-value=0.0018  Score=57.28  Aligned_cols=217  Identities=18%  Similarity=0.238  Sum_probs=128.0

Q ss_pred             EccCCCEEEEeeCCCcEEEEeecCCCceEEEE---ec-CcccC--eE---EEE-eeCCCCCCEEEEEeCCCeEEEEEcCC
Q 022111           19 MDFYGKRLATASSDSSIKIIGLSNSASQHLAT---LK-GHRGP--VW---QVA-WAHPKFGSILASCSYDGQVIIWKEGN   88 (302)
Q Consensus        19 ~s~~~~~l~s~~~d~~v~lw~~~~~~~~~~~~---~~-~h~~~--v~---~v~-~~~~~~~~~l~s~s~D~~i~iwd~~~   88 (302)
                      .+.||+.++ -+..|.|.+||.++...+.+..   +. ..+.+  +.   -+. |+. .+|++++..|. |++-|.+...
T Consensus       274 ~nsDGkrIv-Fq~~GdIylydP~td~lekldI~lpl~rk~k~~k~~~pskyledfa~-~~Gd~ia~VSR-GkaFi~~~~~  350 (668)
T COG4946         274 ANSDGKRIV-FQNAGDIYLYDPETDSLEKLDIGLPLDRKKKQPKFVNPSKYLEDFAV-VNGDYIALVSR-GKAFIMRPWD  350 (668)
T ss_pred             cCCCCcEEE-EecCCcEEEeCCCcCcceeeecCCccccccccccccCHHHhhhhhcc-CCCcEEEEEec-CcEEEECCCC
Confidence            355787775 4567889999976544332210   00 01111  11   111 222 34889999887 4555654433


Q ss_pred             CCceeEEEEecCCCCCeeEEEecCCCCCcEEEEEecCC-cEEEEEecCCCCeeeeeecccCCCCeEEEEeCCCCCCCcee
Q 022111           89 QNDWTQAHTFNDHKSSVNSIAWAPHELGLSLACGSSDG-NISVFTATADGGWDTTRIDQAHPVGVTSVSWAPAMAPGALV  167 (302)
Q Consensus        89 ~~~~~~~~~~~~h~~~i~~l~~~pd~~~~~l~sg~~d~-~v~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~  167 (302)
                      +-   .+ ++ +|.+.|+...+.-+.  .-++.|..|+ .+-+|+.....   ...+. ..-..|.++..+|+       
T Consensus       351 ~~---~i-qv-~~~~~VrY~r~~~~~--e~~vigt~dgD~l~iyd~~~~e---~kr~e-~~lg~I~av~vs~d-------  412 (668)
T COG4946         351 GY---SI-QV-GKKGGVRYRRIQVDP--EGDVIGTNDGDKLGIYDKDGGE---VKRIE-KDLGNIEAVKVSPD-------  412 (668)
T ss_pred             Ce---eE-Ec-CCCCceEEEEEccCC--cceEEeccCCceEEEEecCCce---EEEee-CCccceEEEEEcCC-------
Confidence            21   11 22 477789988888763  3688888888 89999876431   12222 33455777777665       


Q ss_pred             ecccCCCceeEEEeeCCCcEEEEEEecCccccccccccccCCCceeEEEeeCCCCCCccEEEEEecCC----eEEEEEec
Q 022111          168 GLGLLDPVQKLASCGCDNTVKVWKMYNGIWKMDCFPALQMHSDWVRSVAWAPNLGLPKSTIASASQDG----TVVIWTCA  243 (302)
Q Consensus       168 ~~~~~~~~~~l~s~~~D~~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~l~s~s~D~----~i~iwd~~  243 (302)
                             |+.++.+-....+-+.|+.++.-++  +.  ....+-|..++|||+.    ..||-+=.+|    .|+++|+.
T Consensus       413 -------GK~~vvaNdr~el~vididngnv~~--id--kS~~~lItdf~~~~ns----r~iAYafP~gy~tq~Iklydm~  477 (668)
T COG4946         413 -------GKKVVVANDRFELWVIDIDNGNVRL--ID--KSEYGLITDFDWHPNS----RWIAYAFPEGYYTQSIKLYDMD  477 (668)
T ss_pred             -------CcEEEEEcCceEEEEEEecCCCeeE--ec--ccccceeEEEEEcCCc----eeEEEecCcceeeeeEEEEecC
Confidence                   4777777777778888888774221  11  1235679999999995    7788776665    68999987


Q ss_pred             cCCcceeeeeeccCCCcEEEEEEccCCCEEEE
Q 022111          244 KEGEQWEGRVLKDFKTPVWSVSWSLTGNLLAV  275 (302)
Q Consensus       244 ~~~~~~~~~~~~~~~~~v~~~~~spdg~~la~  275 (302)
                      ..+- .  .. ......=.+=+|.|||++|-.
T Consensus       478 ~~Ki-y--~v-TT~ta~DfsPaFD~d~ryLYf  505 (668)
T COG4946         478 GGKI-Y--DV-TTPTAYDFSPAFDPDGRYLYF  505 (668)
T ss_pred             CCeE-E--Ee-cCCcccccCcccCCCCcEEEE
Confidence            5321 1  11 111111234578888887743

>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]

Probab=98.18  E-value=7.1e-05  Score=70.67  Aligned_cols=194  Identities=20%  Similarity=0.288  Sum_probs=120.0

Q ss_pred             CCEEEEEeCCCeEEEEEcCCCCceeEEEEecCCCCCeeEEEecCCCCCcEEEEEecCCcEEEEEecCCCCeeeeeecccC
Q 022111           69 GSILASCSYDGQVIIWKEGNQNDWTQAHTFNDHKSSVNSIAWAPHELGLSLACGSSDGNISVFTATADGGWDTTRIDQAH  148 (302)
Q Consensus        69 ~~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~h~~~i~~l~~~pd~~~~~l~sg~~d~~v~~~~~~~~~~~~~~~~~~~h  148 (302)
                      +..++-|+--..+...|+++..   .......-...|.-++.+    ++.+.+|...|+|.+-|..+-.  ....+. +|
T Consensus       147 ~~~~i~Gg~Q~~li~~Dl~~~~---e~r~~~v~a~~v~imR~N----nr~lf~G~t~G~V~LrD~~s~~--~iht~~-aH  216 (1118)
T KOG1275|consen  147 PSTLIMGGLQEKLIHIDLNTEK---ETRTTNVSASGVTIMRYN----NRNLFCGDTRGTVFLRDPNSFE--TIHTFD-AH  216 (1118)
T ss_pred             Ccceeecchhhheeeeecccce---eeeeeeccCCceEEEEec----CcEEEeecccceEEeecCCcCc--eeeeee-cc
Confidence            3455566655666667776543   222222122235555543    5689999999999998765422  223444 77


Q ss_pred             CCCeEEEEeCCCCCCCceeecccCCCceeEEEeeC---------CCcEEEEEEecCccccccccccccCCCceeEEEeeC
Q 022111          149 PVGVTSVSWAPAMAPGALVGLGLLDPVQKLASCGC---------DNTVKVWKMYNGIWKMDCFPALQMHSDWVRSVAWAP  219 (302)
Q Consensus       149 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~---------D~~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~~~p  219 (302)
                      ...+..+...                |..|+|||.         |..|+|||++.-    ..+..+..+.++ .=+.|+|
T Consensus       217 s~siSDfDv~----------------GNlLitCG~S~R~~~l~~D~FvkVYDLRmm----ral~PI~~~~~P-~flrf~P  275 (1118)
T KOG1275|consen  217 SGSISDFDVQ----------------GNLLITCGYSMRRYNLAMDPFVKVYDLRMM----RALSPIQFPYGP-QFLRFHP  275 (1118)
T ss_pred             ccceeeeecc----------------CCeEEEeecccccccccccchhhhhhhhhh----hccCCcccccCc-hhhhhcc
Confidence            7777655321                456777764         667899998752    222223334433 3367888


Q ss_pred             CCCCCccEEEEEecCCeEEEEEeccCCcceeee-eeccCCCcEEEEEEccCCCEEEEecCC-ceEEeeecCCceEEEee
Q 022111          220 NLGLPKSTIASASQDGTVVIWTCAKEGEQWEGR-VLKDFKTPVWSVSWSLTGNLLAVADAN-NVTLWKEAVDGEWQQVS  296 (302)
Q Consensus       220 ~~~~~~~~l~s~s~D~~i~iwd~~~~~~~~~~~-~~~~~~~~v~~~~~spdg~~la~~~~d-~i~~w~~~~~~~~~~~~  296 (302)
                      ..   ...++..|.-|.+.+-|......+.... ........+.++.+|++|+.+|.+..+ .|.+|....+++..+.+
T Consensus       276 sl---~t~~~V~S~sGq~q~vd~~~lsNP~~~~~~v~p~~s~i~~fDiSsn~~alafgd~~g~v~~wa~~~~P~Fn~~s  351 (1118)
T KOG1275|consen  276 SL---TTRLAVTSQSGQFQFVDTATLSNPPAGVKMVNPNGSGISAFDISSNGDALAFGDHEGHVNLWADRPQPQFNEYS  351 (1118)
T ss_pred             cc---cceEEEEecccceeeccccccCCCccceeEEccCCCcceeEEecCCCceEEEecccCcEeeecCCCCCccCCCc
Confidence            75   4789999999999998843321121111 112233458999999999999999888 69999866566554443

>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=98.17  E-value=0.00036  Score=60.28  Aligned_cols=81  Identities=20%  Similarity=0.368  Sum_probs=66.3

Q ss_pred             ccccccccceeEEEEccCCC-EEEEeeCCCcEEEEeecCCCceEEEEecCcccCeEEEEeeCCCCCCEEEEEeCCCeEEE
Q 022111            5 KIETGHEDTVHDVAMDFYGK-RLATASSDSSIKIIGLSNSASQHLATLKGHRGPVWQVAWAHPKFGSILASCSYDGQVII   83 (302)
Q Consensus         5 ~~~~~h~~~v~~~~~s~~~~-~l~s~~~d~~v~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~s~D~~i~i   83 (302)
                      ++..+|...|.+++|||..+ .|..++.+.+|+|.|+.+.  -.+.++..| ..+++++|.-+ +.++|..|-..|.|.+
T Consensus       187 q~lp~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~--~~vssy~a~-~~~wSC~wDld-e~h~IYaGl~nG~Vlv  262 (463)
T KOG1645|consen  187 QILPGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETS--CVVSSYIAY-NQIWSCCWDLD-ERHVIYAGLQNGMVLV  262 (463)
T ss_pred             hcccccchhhhhhccCccccceeeeeccCceEEEEecccc--eeeeheecc-CCceeeeeccC-CcceeEEeccCceEEE
Confidence            34557788899999999887 7888999999999999753  345566667 68999999765 4678999999999999


Q ss_pred             EEcCCC
Q 022111           84 WKEGNQ   89 (302)
Q Consensus        84 wd~~~~   89 (302)
                      ||++..
T Consensus       263 yD~R~~  268 (463)
T KOG1645|consen  263 YDMRQP  268 (463)
T ss_pred             EEccCC
Confidence            999754

>KOG2695 consensus WD40 repeat protein [General function prediction only]

Probab=98.17  E-value=8.8e-06  Score=68.65  Aligned_cols=125  Identities=10%  Similarity=0.062  Sum_probs=85.9

Q ss_pred             cccceeEEEEccCCCEEEEeeCCCcEEEEeecCC---CceEEEEecCcccCeEEEEeeCCCCCCEEEEEeCCCeEEEEEc
Q 022111           10 HEDTVHDVAMDFYGKRLATASSDSSIKIIGLSNS---ASQHLATLKGHRGPVWQVAWAHPKFGSILASCSYDGQVIIWKE   86 (302)
Q Consensus        10 h~~~v~~~~~s~~~~~l~s~~~d~~v~lw~~~~~---~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~s~D~~i~iwd~   86 (302)
                      .+..|.++.|...+..+..|+..|.|..+|+...   ...+...+ -|...|+++..-- .++.+|.+.+.+|+|++||.
T Consensus       251 sksDVfAlQf~~s~nLv~~GcRngeI~~iDLR~rnqG~~~~a~rl-yh~Ssvtslq~Lq-~s~q~LmaS~M~gkikLyD~  328 (425)
T KOG2695|consen  251 SKSDVFALQFAGSDNLVFNGCRNGEIFVIDLRCRNQGNGWCAQRL-YHDSSVTSLQILQ-FSQQKLMASDMTGKIKLYDL  328 (425)
T ss_pred             cchhHHHHHhcccCCeeEecccCCcEEEEEeeecccCCCcceEEE-EcCcchhhhhhhc-cccceEeeccCcCceeEeee
Confidence            3456666777776789999999999999998532   22333334 3888898876432 23567888899999999998


Q ss_pred             CCCCceeEEEEecCCCCCeeEEEecCCCCCcEEEEEecCCcEEEEEecCC
Q 022111           87 GNQNDWTQAHTFNDHKSSVNSIAWAPHELGLSLACGSSDGNISVFTATAD  136 (302)
Q Consensus        87 ~~~~~~~~~~~~~~h~~~i~~l~~~pd~~~~~l~sg~~d~~v~~~~~~~~  136 (302)
                      +--+....+.++.+|-..-..+-++-++..-.++++++|-..++|.+..+
T Consensus       329 R~~K~~~~V~qYeGHvN~~a~l~~~v~~eeg~I~s~GdDcytRiWsl~~g  378 (425)
T KOG2695|consen  329 RATKCKKSVMQYEGHVNLSAYLPAHVKEEEGSIFSVGDDCYTRIWSLDSG  378 (425)
T ss_pred             hhhhcccceeeeecccccccccccccccccceEEEccCeeEEEEEecccC
Confidence            75433334777888854444444432322336777999999999988643

>PRK04043 tolB translocation protein TolB; Provisional

Probab=98.17  E-value=0.0023  Score=57.94  Aligned_cols=180  Identities=8%  Similarity=0.011  Sum_probs=93.0

Q ss_pred             ceeEEEEccCCCE-EEEeeCC---CcEEEEeecCCCceEEEEecCcccCeEEEEeeCCCCCCE-EEEEeCCC--eEEEEE
Q 022111           13 TVHDVAMDFYGKR-LATASSD---SSIKIIGLSNSASQHLATLKGHRGPVWQVAWAHPKFGSI-LASCSYDG--QVIIWK   85 (302)
Q Consensus        13 ~v~~~~~s~~~~~-l~s~~~d---~~v~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~-l~s~s~D~--~i~iwd   85 (302)
                      ....-.|+|||+. ++-.+.+   ..|.++|+.++..+.+..   ..+.+....|+|+  |+. +++.+.++  .|-++|
T Consensus       189 ~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~lt~---~~g~~~~~~~SPD--G~~la~~~~~~g~~~Iy~~d  263 (419)
T PRK04043        189 LNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKKEKIAS---SQGMLVVSDVSKD--GSKLLLTMAPKGQPDIYLYD  263 (419)
T ss_pred             CeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCcEEEEec---CCCcEEeeEECCC--CCEEEEEEccCCCcEEEEEE
Confidence            5567889999984 5544433   457777776544333332   3444556789874  654 44555454  455556


Q ss_pred             cCCCCceeEEEEecCCCCCeeEEEecCCCCCcEEEEEe-cCC--cEEEEEecCCCCeeeeeecccCCCCeEEEEeCCCCC
Q 022111           86 EGNQNDWTQAHTFNDHKSSVNSIAWAPHELGLSLACGS-SDG--NISVFTATADGGWDTTRIDQAHPVGVTSVSWAPAMA  162 (302)
Q Consensus        86 ~~~~~~~~~~~~~~~h~~~i~~l~~~pd~~~~~l~sg~-~d~--~v~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~  162 (302)
                      +.++.    ...+..+........|+||  |..|+..+ ..+  .|.++++..+ ...  .+... ..  ....|+|++ 
T Consensus       264 l~~g~----~~~LT~~~~~d~~p~~SPD--G~~I~F~Sdr~g~~~Iy~~dl~~g-~~~--rlt~~-g~--~~~~~SPDG-  330 (419)
T PRK04043        264 TNTKT----LTQITNYPGIDVNGNFVED--DKRIVFVSDRLGYPNIFMKKLNSG-SVE--QVVFH-GK--NNSSVSTYK-  330 (419)
T ss_pred             CCCCc----EEEcccCCCccCccEECCC--CCEEEEEECCCCCceEEEEECCCC-CeE--eCccC-CC--cCceECCCC-
Confidence            65442    2233333333345579998  55555544 334  4555555432 221  11111 11  123788875 


Q ss_pred             CCceeecccCCCceeEEEeeCC---------CcEEEEEEecCccccccccccccCCCceeEEEeeCCCCCCccEEEEEec
Q 022111          163 PGALVGLGLLDPVQKLASCGCD---------NTVKVWKMYNGIWKMDCFPALQMHSDWVRSVAWAPNLGLPKSTIASASQ  233 (302)
Q Consensus       163 ~~~~~~~~~~~~~~~l~s~~~D---------~~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~l~s~s~  233 (302)
                                   +.|+-.+..         ..|.+.|+.++..  .   .+... .......|+||+    +.|+-.+.
T Consensus       331 -------------~~Ia~~~~~~~~~~~~~~~~I~v~d~~~g~~--~---~LT~~-~~~~~p~~SPDG----~~I~f~~~  387 (419)
T PRK04043        331 -------------NYIVYSSRETNNEFGKNTFNLYLISTNSDYI--R---RLTAN-GVNQFPRFSSDG----GSIMFIKY  387 (419)
T ss_pred             -------------CEEEEEEcCCCcccCCCCcEEEEEECCCCCe--E---ECCCC-CCcCCeEECCCC----CEEEEEEc
Confidence                         444433332         2577777766532  1   12211 123358899996    44544443

>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.13  E-value=0.00046  Score=65.04  Aligned_cols=199  Identities=14%  Similarity=0.159  Sum_probs=121.4

Q ss_pred             EEccCCCEEEEeeCCCcEEEEeecCCCceEEEEecCcccC-eEEEEeeCCCCCCEEEEEeCCCe-----EEEEEcCCC--
Q 022111           18 AMDFYGKRLATASSDSSIKIIGLSNSASQHLATLKGHRGP-VWQVAWAHPKFGSILASCSYDGQ-----VIIWKEGNQ--   89 (302)
Q Consensus        18 ~~s~~~~~l~s~~~d~~v~lw~~~~~~~~~~~~~~~h~~~-v~~v~~~~~~~~~~l~s~s~D~~-----i~iwd~~~~--   89 (302)
                      ++++.+..+|.|+.+|.|.+++-+   .+.+..+++++.. |..+-.. + .-..|++.++|.+     ++||+++..  
T Consensus        30 c~~s~~~~vvigt~~G~V~~Ln~s---~~~~~~fqa~~~siv~~L~~~-~-~~~~L~sv~Ed~~~np~llkiw~lek~~~  104 (933)
T KOG2114|consen   30 CCSSSTGSVVIGTADGRVVILNSS---FQLIRGFQAYEQSIVQFLYIL-N-KQNFLFSVGEDEQGNPVLLKIWDLEKVDK  104 (933)
T ss_pred             EEcCCCceEEEeeccccEEEeccc---ceeeehheecchhhhhHhhcc-c-CceEEEEEeecCCCCceEEEEecccccCC
Confidence            457788899999999988887643   2344567777766 4444322 2 1357888887765     899998532  


Q ss_pred             Cc-eeEE--EEecC-----CCCCeeEEEecCCCCCcEEEEEecCCcEEEEEecC--CCCeeeeeecccCCCCeEEEEeCC
Q 022111           90 ND-WTQA--HTFND-----HKSSVNSIAWAPHELGLSLACGSSDGNISVFTATA--DGGWDTTRIDQAHPVGVTSVSWAP  159 (302)
Q Consensus        90 ~~-~~~~--~~~~~-----h~~~i~~l~~~pd~~~~~l~sg~~d~~v~~~~~~~--~~~~~~~~~~~~h~~~v~~~~~~~  159 (302)
                      +. ..+.  +....     ...++.+++.+.+  -+.+|+|-.+|.|..+...-  +.... .........+|+.+.+..
T Consensus       105 n~sP~c~~~~ri~~~~np~~~~p~s~l~Vs~~--l~~Iv~Gf~nG~V~~~~GDi~RDrgsr-~~~~~~~~~pITgL~~~~  181 (933)
T KOG2114|consen  105 NNSPQCLYEHRIFTIKNPTNPSPASSLAVSED--LKTIVCGFTNGLVICYKGDILRDRGSR-QDYSHRGKEPITGLALRS  181 (933)
T ss_pred             CCCcceeeeeeeeccCCCCCCCcceEEEEEcc--ccEEEEEecCcEEEEEcCcchhccccc-eeeeccCCCCceeeEEec
Confidence            11 1222  11112     2457888999876  45899999999999985431  11111 111112345788887754


Q ss_pred             CCCCCceeecccCCCceeEEEeeCCCcEEEEEEecCccccccccccccCCCceeEEEeeCCCCCCccEEEEEecCCeEEE
Q 022111          160 AMAPGALVGLGLLDPVQKLASCGCDNTVKVWKMYNGIWKMDCFPALQMHSDWVRSVAWAPNLGLPKSTIASASQDGTVVI  239 (302)
Q Consensus       160 ~~~~~~~~~~~~~~~~~~l~s~~~D~~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~l~s~s~D~~i~i  239 (302)
                      ++             ...+..+ +...|.+|.+....   .....+..|....+|.++++..   +.+++++++  .+.+
T Consensus       182 d~-------------~s~lFv~-Tt~~V~~y~l~gr~---p~~~~ld~~G~~lnCss~~~~t---~qfIca~~e--~l~f  239 (933)
T KOG2114|consen  182 DG-------------KSVLFVA-TTEQVMLYSLSGRT---PSLKVLDNNGISLNCSSFSDGT---YQFICAGSE--FLYF  239 (933)
T ss_pred             CC-------------ceeEEEE-ecceeEEEEecCCC---cceeeeccCCccceeeecCCCC---ccEEEecCc--eEEE
Confidence            32             1213333 34569999987431   1234467788889999998753   235555543  4788


Q ss_pred             EEeccCC
Q 022111          240 WTCAKEG  246 (302)
Q Consensus       240 wd~~~~~  246 (302)
                      |+....+
T Consensus       240 Y~sd~~~  246 (933)
T KOG2114|consen  240 YDSDGRG  246 (933)
T ss_pred             EcCCCcc
Confidence            8876543

>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.12  E-value=0.00042  Score=64.80  Aligned_cols=120  Identities=16%  Similarity=0.241  Sum_probs=80.1

Q ss_pred             ccccccceeEEEEccC-------------CCEEEEeeCCCcEEEEeecCCCceEEEEecCcccCeEEEEeeCC---CCCC
Q 022111            7 ETGHEDTVHDVAMDFY-------------GKRLATASSDSSIKIIGLSNSASQHLATLKGHRGPVWQVAWAHP---KFGS   70 (302)
Q Consensus         7 ~~~h~~~v~~~~~s~~-------------~~~l~s~~~d~~v~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~---~~~~   70 (302)
                      +..|++.|.-..+..+             |++++||+.||+|.|-.+-+........+   ..++.+|++.|+   +..+
T Consensus        54 ~GtH~g~v~~~~~~~~~~~~~~~s~~~~~Gey~asCS~DGkv~I~sl~~~~~~~~~df---~rpiksial~Pd~~~~~sk  130 (846)
T KOG2066|consen   54 LGTHRGAVYLTTCQGNPKTNFDHSSSILEGEYVASCSDDGKVVIGSLFTDDEITQYDF---KRPIKSIALHPDFSRQQSK  130 (846)
T ss_pred             eccccceEEEEecCCcccccccccccccCCceEEEecCCCcEEEeeccCCccceeEec---CCcceeEEeccchhhhhhh
Confidence            3357777776655554             89999999999999988754332222233   457888998765   2356


Q ss_pred             EEEEEeCCCeEEEEEcCCCCceeEEEEecCCCCCeeEEEecCCCCCcEEEEEecCCcEEEEEecCC
Q 022111           71 ILASCSYDGQVIIWKEGNQNDWTQAHTFNDHKSSVNSIAWAPHELGLSLACGSSDGNISVFTATAD  136 (302)
Q Consensus        71 ~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~h~~~i~~l~~~pd~~~~~l~sg~~d~~v~~~~~~~~  136 (302)
                      .+++|+.-| +.++.-+--+.+..+ .+..-.++|.++.|.    |.++|=++++ -|++||....
T Consensus       131 ~fv~GG~ag-lvL~er~wlgnk~~v-~l~~~eG~I~~i~W~----g~lIAWand~-Gv~vyd~~~~  189 (846)
T KOG2066|consen  131 QFVSGGMAG-LVLSERNWLGNKDSV-VLSEGEGPIHSIKWR----GNLIAWANDD-GVKVYDTPTR  189 (846)
T ss_pred             heeecCcce-EEEehhhhhcCccce-eeecCccceEEEEec----CcEEEEecCC-CcEEEecccc
Confidence            899999888 777642211111122 344467999999996    5577777655 5789998654

>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=98.09  E-value=0.00047  Score=59.62  Aligned_cols=83  Identities=14%  Similarity=0.209  Sum_probs=66.4

Q ss_pred             EEEecCcccCeEEEEeeCCCCCCEEEEEeCCCeEEEEEcCCCCceeEEEEecCCCCCeeEEEecCCCCCcEEEEEecCCc
Q 022111           48 LATLKGHRGPVWQVAWAHPKFGSILASCSYDGQVIIWKEGNQNDWTQAHTFNDHKSSVNSIAWAPHELGLSLACGSSDGN  127 (302)
Q Consensus        48 ~~~~~~h~~~v~~v~~~~~~~~~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~h~~~i~~l~~~pd~~~~~l~sg~~d~~  127 (302)
                      ..-+.+|...|..++|+|.+. -++..++-+.+|+|.|+++.   ..+.++..| ..+.+++|.-|+ ...+.+|...|.
T Consensus       186 sq~lp~~g~~IrdlafSp~~~-GLl~~asl~nkiki~dlet~---~~vssy~a~-~~~wSC~wDlde-~h~IYaGl~nG~  259 (463)
T KOG1645|consen  186 SQILPGEGSFIRDLAFSPFNE-GLLGLASLGNKIKIMDLETS---CVVSSYIAY-NQIWSCCWDLDE-RHVIYAGLQNGM  259 (463)
T ss_pred             hhcccccchhhhhhccCcccc-ceeeeeccCceEEEEecccc---eeeeheecc-CCceeeeeccCC-cceeEEeccCce
Confidence            334567888899999987543 37788999999999999876   356667666 789999998875 457999999999


Q ss_pred             EEEEEecCC
Q 022111          128 ISVFTATAD  136 (302)
Q Consensus       128 v~~~~~~~~  136 (302)
                      |.+||++..
T Consensus       260 VlvyD~R~~  268 (463)
T KOG1645|consen  260 VLVYDMRQP  268 (463)
T ss_pred             EEEEEccCC
Confidence            999999854

>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats

Probab=98.04  E-value=0.00047  Score=62.50  Aligned_cols=112  Identities=18%  Similarity=0.228  Sum_probs=73.3

Q ss_pred             EEEEeeCCCCCCEEEEE----eCCCeE----EEEEcCCCCceeEE--EEecCCCCCeeEEEecCCCCCcEEEEEecCCcE
Q 022111           59 WQVAWAHPKFGSILASC----SYDGQV----IIWKEGNQNDWTQA--HTFNDHKSSVNSIAWAPHELGLSLACGSSDGNI  128 (302)
Q Consensus        59 ~~v~~~~~~~~~~l~s~----s~D~~i----~iwd~~~~~~~~~~--~~~~~h~~~i~~l~~~pd~~~~~l~sg~~d~~v  128 (302)
                      .++.|+.. .+..+.|.    +.++.+    .+|+....+ ...+  ..+ .....|.+++++|++  ..++.|..||.|
T Consensus       209 l~~~Fs~~-~~~qi~tVE~s~s~~g~~~~d~ciYE~~r~k-lqrvsvtsi-pL~s~v~~ca~sp~E--~kLvlGC~DgSi  283 (545)
T PF11768_consen  209 LDVEFSLN-QPYQIHTVEQSISVKGEPSADSCIYECSRNK-LQRVSVTSI-PLPSQVICCARSPSE--DKLVLGCEDGSI  283 (545)
T ss_pred             EEEEccCC-CCcEEEEEEEecCCCCCceeEEEEEEeecCc-eeEEEEEEE-ecCCcceEEecCccc--ceEEEEecCCeE
Confidence            45667643 34555544    233433    345553322 1222  223 267789999999985  489999999999


Q ss_pred             EEEEecCCCCeeeeeecccCCCCeEEEEeCCCCCCCceeecccCCCceeEEEeeCCCcEEEEEEec
Q 022111          129 SVFTATADGGWDTTRIDQAHPVGVTSVSWAPAMAPGALVGLGLLDPVQKLASCGCDNTVKVWKMYN  194 (302)
Q Consensus       129 ~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~D~~v~iwd~~~  194 (302)
                      .+||.....    .... ......+.++|+|++              ..+++|+.-|.+.+||+.-
T Consensus       284 iLyD~~~~~----t~~~-ka~~~P~~iaWHp~g--------------ai~~V~s~qGelQ~FD~AL  330 (545)
T PF11768_consen  284 ILYDTTRGV----TLLA-KAEFIPTLIAWHPDG--------------AIFVVGSEQGELQCFDMAL  330 (545)
T ss_pred             EEEEcCCCe----eeee-eecccceEEEEcCCC--------------cEEEEEcCCceEEEEEeec
Confidence            999976432    1111 223456889999974              7899999999999999753

>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=97.93  E-value=6.2e-06  Score=74.82  Aligned_cols=208  Identities=16%  Similarity=0.214  Sum_probs=122.8

Q ss_pred             ceeEEEEccCC--CEEEEeeCCCcEEEEeecCCCceEEEEecCcccCeEEEEeeCCCCCCEEEEEe----CCCeEEEEEc
Q 022111           13 TVHDVAMDFYG--KRLATASSDSSIKIIGLSNSASQHLATLKGHRGPVWQVAWAHPKFGSILASCS----YDGQVIIWKE   86 (302)
Q Consensus        13 ~v~~~~~s~~~--~~l~s~~~d~~v~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~s----~D~~i~iwd~   86 (302)
                      .+.+++...+.  -.++.|..+|.|-+-.+..+....-....+|...+++++|++ .+.++||.|-    .|..+.|||+
T Consensus        58 y~kcva~~y~~d~cIlavG~atG~I~l~s~r~~hdSs~E~tp~~ar~Ct~lAwne-LDtn~LAagldkhrnds~~~Iwdi  136 (783)
T KOG1008|consen   58 YVKCVASFYGNDRCILAVGSATGNISLLSVRHPHDSSAEVTPGYARPCTSLAWNE-LDTNHLAAGLDKHRNDSSLKIWDI  136 (783)
T ss_pred             CceeehhhcCCchhhhhhccccCceEEeecCCcccccceeccccccccccccccc-ccHHHHHhhhhhhcccCCccceec
Confidence            44555544333  478889999999998774433222234567888999999975 3567788773    4778999999


Q ss_pred             CCC--CceeEEEEecC-CCCCeeEEEecCCCCCcEEEEEecCCcEEEEEecCCCCeeeeeecccCCCCeEEEEeCCCCCC
Q 022111           87 GNQ--NDWTQAHTFND-HKSSVNSIAWAPHELGLSLACGSSDGNISVFTATADGGWDTTRIDQAHPVGVTSVSWAPAMAP  163 (302)
Q Consensus        87 ~~~--~~~~~~~~~~~-h~~~i~~l~~~pd~~~~~l~sg~~d~~v~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~  163 (302)
                      .+.  .+... ..|.. ...-..+++|-.+  .+++.+|...+.+.++|++.... ....+   .+..+..+...|..  
T Consensus       137 ~s~ltvPke~-~~fs~~~l~gqns~cwlrd--~klvlaGm~sr~~~ifdlRqs~~-~~~sv---nTk~vqG~tVdp~~--  207 (783)
T KOG1008|consen  137 NSLLTVPKES-PLFSSSTLDGQNSVCWLRD--TKLVLAGMTSRSVHIFDLRQSLD-SVSSV---NTKYVQGITVDPFS--  207 (783)
T ss_pred             ccccCCCccc-cccccccccCccccccccC--cchhhcccccchhhhhhhhhhhh-hhhhh---hhhhcccceecCCC--
Confidence            765  11111 11211 3334457777655  45788888888999999873211 00111   11123333334421  


Q ss_pred             CceeecccCCCceeEEEeeCCCcEEEEE-EecCcccccc-ccccccCCCceeEEEeeCCCCCCccEEEEEec-CCeEEEE
Q 022111          164 GALVGLGLLDPVQKLASCGCDNTVKVWK-MYNGIWKMDC-FPALQMHSDWVRSVAWAPNLGLPKSTIASASQ-DGTVVIW  240 (302)
Q Consensus       164 ~~~~~~~~~~~~~~l~s~~~D~~v~iwd-~~~~~~~~~~-~~~~~~h~~~v~~v~~~p~~~~~~~~l~s~s~-D~~i~iw  240 (302)
                                 ..++++-. |+.|-+|| .++-...+.. ++.-......+..++|+|..   ..++++.+. .++|+.+
T Consensus       208 -----------~nY~cs~~-dg~iAiwD~~rnienpl~~i~~~~N~~~~~l~~~aycPtr---tglla~l~RdS~tIrly  272 (783)
T KOG1008|consen  208 -----------PNYFCSNS-DGDIAIWDTYRNIENPLQIILRNENKKPKQLFALAYCPTR---TGLLAVLSRDSITIRLY  272 (783)
T ss_pred             -----------CCceeccc-cCceeeccchhhhccHHHHHhhCCCCcccceeeEEeccCC---cchhhhhccCcceEEEe
Confidence                       24555555 89999999 4332111111 11111122348899999974   356666665 4589999


Q ss_pred             EeccC
Q 022111          241 TCAKE  245 (302)
Q Consensus       241 d~~~~  245 (302)
                      |+...
T Consensus       273 di~~v  277 (783)
T KOG1008|consen  273 DICVV  277 (783)
T ss_pred             ccccc
Confidence            98753

>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]

Probab=97.87  E-value=0.004  Score=61.04  Aligned_cols=236  Identities=14%  Similarity=0.211  Sum_probs=128.2

Q ss_pred             cceeEEEEccCCCEEEEeeCCCcEEEEeecCCCceEEEEecCcccCeEEEEeeCCCCCCEEEEEeCCCeEEEEEcCCCCc
Q 022111           12 DTVHDVAMDFYGKRLATASSDSSIKIIGLSNSASQHLATLKGHRGPVWQVAWAHPKFGSILASCSYDGQVIIWKEGNQND   91 (302)
Q Consensus        12 ~~v~~~~~s~~~~~l~s~~~d~~v~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~s~D~~i~iwd~~~~~~   91 (302)
                      +.|.++.|..+...++.+..+|.|.+-|.++...+.+..   -...|.+++|+++  ...++-...++++.+-.-    .
T Consensus        69 ~~i~s~~fl~d~~~i~v~~~~G~iilvd~et~~~eivg~---vd~GI~aaswS~D--ee~l~liT~~~tll~mT~----~  139 (1265)
T KOG1920|consen   69 DEIVSVQFLADTNSICVITALGDIILVDPETLELEIVGN---VDNGISAASWSPD--EELLALITGRQTLLFMTK----D  139 (1265)
T ss_pred             cceEEEEEecccceEEEEecCCcEEEEcccccceeeeee---ccCceEEEeecCC--CcEEEEEeCCcEEEEEec----c
Confidence            688889998888888888899999998876544444333   3567999999875  678888888888777531    1


Q ss_pred             eeEEEEecCCCCCeeEEEecCCCCCcEEEEEecCCcEEEEEecCCCC--eee---eee-c--ccCCCCeEEEEeCCCCCC
Q 022111           92 WTQAHTFNDHKSSVNSIAWAPHELGLSLACGSSDGNISVFTATADGG--WDT---TRI-D--QAHPVGVTSVSWAPAMAP  163 (302)
Q Consensus        92 ~~~~~~~~~h~~~i~~l~~~pd~~~~~l~sg~~d~~v~~~~~~~~~~--~~~---~~~-~--~~h~~~v~~~~~~~~~~~  163 (302)
                      +.++.....+      ..-.+   -...+.+++.+.=.-+....+..  .+.   ... .  ..+. .=+++.|--+   
T Consensus       140 f~~i~E~~L~------~d~~~---~sk~v~VGwGrkeTqfrgs~gr~~~~~~~~~ek~~~~~~~~~-~~~~IsWRgD---  206 (1265)
T KOG1920|consen  140 FEPIAEKPLD------ADDER---KSKFVNVGWGRKETQFRGSEGRQAARQKIEKEKALEQIEQDD-HKTSISWRGD---  206 (1265)
T ss_pred             ccchhccccc------ccccc---ccccceecccccceeeecchhhhcccccccccccccchhhcc-CCceEEEccC---
Confidence            1111110000      00001   11234444433222221111100  000   000 0  0111 1245777543   


Q ss_pred             CceeecccCCCceeEEEe----eCC-CcEEEEEEecCccccccccccccCCCceeEEEeeCCCCCCccEEEEEe---cCC
Q 022111          164 GALVGLGLLDPVQKLASC----GCD-NTVKVWKMYNGIWKMDCFPALQMHSDWVRSVAWAPNLGLPKSTIASAS---QDG  235 (302)
Q Consensus       164 ~~~~~~~~~~~~~~l~s~----~~D-~~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~l~s~s---~D~  235 (302)
                                 |+++|+.    ..+ +.|+|||-. +...-..    ....+.-.+++|-|.|    ..+++.-   .|.
T Consensus       207 -----------g~~fAVs~~~~~~~~RkirV~drE-g~Lns~s----e~~~~l~~~LsWkPsg----s~iA~iq~~~sd~  266 (1265)
T KOG1920|consen  207 -----------GEYFAVSFVESETGTRKIRVYDRE-GALNSTS----EPVEGLQHSLSWKPSG----SLIAAIQCKTSDS  266 (1265)
T ss_pred             -----------CcEEEEEEEeccCCceeEEEeccc-chhhccc----CcccccccceeecCCC----CeEeeeeecCCCC
Confidence                       4555552    234 899999976 3211110    1112233589999975    6677763   455


Q ss_pred             eEEEEEeccCCcceeeeeecc---CCCcEEEEEEccCCCEEEE---ecCC-ceEEeeecCCceEE
Q 022111          236 TVVIWTCAKEGEQWEGRVLKD---FKTPVWSVSWSLTGNLLAV---ADAN-NVTLWKEAVDGEWQ  293 (302)
Q Consensus       236 ~i~iwd~~~~~~~~~~~~~~~---~~~~v~~~~~spdg~~la~---~~~d-~i~~w~~~~~~~~~  293 (302)
                      .|.+|.....   ..+.+...   ...++..++|+.++.+||+   ...+ .|++|-.. +=.|=
T Consensus       267 ~IvffErNGL---~hg~f~l~~p~de~~ve~L~Wns~sdiLAv~~~~~e~~~v~lwt~~-NyhWY  327 (1265)
T KOG1920|consen  267 DIVFFERNGL---RHGEFVLPFPLDEKEVEELAWNSNSDILAVVTSNLENSLVQLWTTG-NYHWY  327 (1265)
T ss_pred             cEEEEecCCc---cccccccCCcccccchheeeecCCCCceeeeecccccceEEEEEec-CeEEE
Confidence            7888864432   11222111   1234889999999999998   4444 49999753 33343

>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=97.83  E-value=1.4e-05  Score=72.52  Aligned_cols=208  Identities=17%  Similarity=0.240  Sum_probs=123.0

Q ss_pred             cCeEEEEeeCCCCCCEEEEEeCCCeEEEEEcCCCCceeEEEEecCCCCCeeEEEecCCCCCcEEEEE----ecCCcEEEE
Q 022111           56 GPVWQVAWAHPKFGSILASCSYDGQVIIWKEGNQNDWTQAHTFNDHKSSVNSIAWAPHELGLSLACG----SSDGNISVF  131 (302)
Q Consensus        56 ~~v~~v~~~~~~~~~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~h~~~i~~l~~~pd~~~~~l~sg----~~d~~v~~~  131 (302)
                      ..+.++++....+-.+++.|..+|.|-+-..+..- ........+|..+-++++|++-+ ...||+|    ..|..+.||
T Consensus        57 qy~kcva~~y~~d~cIlavG~atG~I~l~s~r~~h-dSs~E~tp~~ar~Ct~lAwneLD-tn~LAagldkhrnds~~~Iw  134 (783)
T KOG1008|consen   57 QYVKCVASFYGNDRCILAVGSATGNISLLSVRHPH-DSSAEVTPGYARPCTSLAWNELD-TNHLAAGLDKHRNDSSLKIW  134 (783)
T ss_pred             CCceeehhhcCCchhhhhhccccCceEEeecCCcc-cccceeccccccccccccccccc-HHHHHhhhhhhcccCCccce
Confidence            45667776554333578999999999998764321 11233455677888999998753 3467766    345688999


Q ss_pred             EecCCC--CeeeeeecccCCCCeEEEEeCCCCCCCceeecccCCCceeEEEeeCCCcEEEEEEecCccccccccccccCC
Q 022111          132 TATADG--GWDTTRIDQAHPVGVTSVSWAPAMAPGALVGLGLLDPVQKLASCGCDNTVKVWKMYNGIWKMDCFPALQMHS  209 (302)
Q Consensus       132 ~~~~~~--~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~D~~v~iwd~~~~~~~~~~~~~~~~h~  209 (302)
                      |+...-  +.....+..+......+++|-.+              .+++.+|...+.+.++|++...-....+     -+
T Consensus       135 di~s~ltvPke~~~fs~~~l~gqns~cwlrd--------------~klvlaGm~sr~~~ifdlRqs~~~~~sv-----nT  195 (783)
T KOG1008|consen  135 DINSLLTVPKESPLFSSSTLDGQNSVCWLRD--------------TKLVLAGMTSRSVHIFDLRQSLDSVSSV-----NT  195 (783)
T ss_pred             ecccccCCCccccccccccccCccccccccC--------------cchhhcccccchhhhhhhhhhhhhhhhh-----hh
Confidence            987531  11111121112334556777643              3788899999999999998431110111     12


Q ss_pred             CceeEEEeeCCCCCCccEEEEEecCCeEEEEEe-ccCCcceeeeeec--cCCCcEEEEEEccCC-CEEEEecCC--ceEE
Q 022111          210 DWVRSVAWAPNLGLPKSTIASASQDGTVVIWTC-AKEGEQWEGRVLK--DFKTPVWSVSWSLTG-NLLAVADAN--NVTL  283 (302)
Q Consensus       210 ~~v~~v~~~p~~~~~~~~l~s~s~D~~i~iwd~-~~~~~~~~~~~~~--~~~~~v~~~~~spdg-~~la~~~~d--~i~~  283 (302)
                      ..+..+...|=   .++++++.. |+.|-+||. +.-..+.+..+..  .....+..++|.|.. -.+++-.+|  .|++
T Consensus       196 k~vqG~tVdp~---~~nY~cs~~-dg~iAiwD~~rnienpl~~i~~~~N~~~~~l~~~aycPtrtglla~l~RdS~tIrl  271 (783)
T KOG1008|consen  196 KYVQGITVDPF---SPNYFCSNS-DGDIAIWDTYRNIENPLQIILRNENKKPKQLFALAYCPTRTGLLAVLSRDSITIRL  271 (783)
T ss_pred             hhcccceecCC---CCCceeccc-cCceeeccchhhhccHHHHHhhCCCCcccceeeEEeccCCcchhhhhccCcceEEE
Confidence            23445555662   136787776 999999993 3211111101111  112358899999954 355666677  4888


Q ss_pred             eeecC
Q 022111          284 WKEAV  288 (302)
Q Consensus       284 w~~~~  288 (302)
                      +++.+
T Consensus       272 ydi~~  276 (783)
T KOG1008|consen  272 YDICV  276 (783)
T ss_pred             ecccc
Confidence            88744

>KOG1912 consensus WD40 repeat protein [General function prediction only]

Probab=97.79  E-value=0.00089  Score=62.55  Aligned_cols=165  Identities=21%  Similarity=0.343  Sum_probs=105.7

Q ss_pred             CeeEEEecCCCCCcEEEEEecCCcEEEEEecCCCCeeeeeecccCCCCeEEEEeCCCCCCCceeecccCCCceeEEEeeC
Q 022111          104 SVNSIAWAPHELGLSLACGSSDGNISVFTATADGGWDTTRIDQAHPVGVTSVSWAPAMAPGALVGLGLLDPVQKLASCGC  183 (302)
Q Consensus       104 ~i~~l~~~pd~~~~~l~sg~~d~~v~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~  183 (302)
                      .-.+++|+|.  | ++|.|+. ..|.+-|..+-...  ..+ ..|...|+.+.|.|...+..+.+-..  -.-+||++-.
T Consensus        17 N~~A~Dw~~~--G-LiAygsh-slV~VVDs~s~q~i--qsi-e~h~s~V~~VrWap~~~p~~llS~~~--~~lliAsaD~   87 (1062)
T KOG1912|consen   17 NRNAADWSPS--G-LIAYGSH-SLVSVVDSRSLQLI--QSI-ELHQSAVTSVRWAPAPSPRDLLSPSS--SQLLIASADI   87 (1062)
T ss_pred             cccccccCcc--c-eEEEecC-ceEEEEehhhhhhh--hcc-ccCccceeEEEeccCCCchhccCccc--cceeEEeccc
Confidence            3678899985  4 5777654 46667776542211  223 36788899999999765544432110  1246788888


Q ss_pred             CCcEEEEEEecCccccccccccccCCCceeEEEeeCCCCCCccEEEEEecCCeEEEEEeccCCcceeeeeeccCCCcEE-
Q 022111          184 DNTVKVWKMYNGIWKMDCFPALQMHSDWVRSVAWAPNLGLPKSTIASASQDGTVVIWTCAKEGEQWEGRVLKDFKTPVW-  262 (302)
Q Consensus       184 D~~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~~~~~v~-  262 (302)
                      .|.|.+||...+.    .+..+..|.++|.+++|-|...-+...|++...-.+|.+|+..+....|.    .++...+. 
T Consensus        88 ~GrIil~d~~~~s----~~~~l~~~~~~~qdl~W~~~rd~Srd~LlaIh~ss~lvLwntdtG~k~Wk----~~ys~~iLs  159 (1062)
T KOG1912|consen   88 SGRIILVDFVLAS----VINWLSHSNDSVQDLCWVPARDDSRDVLLAIHGSSTLVLWNTDTGEKFWK----YDYSHEILS  159 (1062)
T ss_pred             cCcEEEEEehhhh----hhhhhcCCCcchhheeeeeccCcchheeEEecCCcEEEEEEccCCceeec----cccCCccee
Confidence            8999999987652    33456778899999999885433346788888899999999887655553    23333343 


Q ss_pred             EEEEcc-CCCEE-EEecCCceEEee
Q 022111          263 SVSWSL-TGNLL-AVADANNVTLWK  285 (302)
Q Consensus       263 ~~~~sp-dg~~l-a~~~~d~i~~w~  285 (302)
                      ++.+.| |-+.+ +.++.+.+.+-+
T Consensus       160 ~f~~DPfd~rh~~~l~s~g~vl~~~  184 (1062)
T KOG1912|consen  160 CFRVDPFDSRHFCVLGSKGFVLSCK  184 (1062)
T ss_pred             eeeeCCCCcceEEEEccCceEEEEe
Confidence            367766 44444 333333444444

>KOG1912 consensus WD40 repeat protein [General function prediction only]

Probab=97.78  E-value=0.0063  Score=57.16  Aligned_cols=257  Identities=14%  Similarity=0.132  Sum_probs=140.6

Q ss_pred             cccceeEEEEccCCCEEEEeeCCCcEEEEeecCCCceEEEEecCcccCeEEEEeeCCC----------CCCEEEEEeCCC
Q 022111           10 HEDTVHDVAMDFYGKRLATASSDSSIKIIGLSNSASQHLATLKGHRGPVWQVAWAHPK----------FGSILASCSYDG   79 (302)
Q Consensus        10 h~~~v~~~~~s~~~~~l~s~~~d~~v~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~~----------~~~~l~s~s~D~   79 (302)
                      |...-.++.|+|.| .+|=|+ ...|.+-|.-.  .+.+.++.-|+..|+.++|.|-.          .--+||++...|
T Consensus        14 ~~sN~~A~Dw~~~G-LiAygs-hslV~VVDs~s--~q~iqsie~h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~G   89 (1062)
T KOG1912|consen   14 SRSNRNAADWSPSG-LIAYGS-HSLVSVVDSRS--LQLIQSIELHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADISG   89 (1062)
T ss_pred             CcccccccccCccc-eEEEec-CceEEEEehhh--hhhhhccccCccceeEEEeccCCCchhccCccccceeEEeccccC
Confidence            34445567889877 555454 44567766533  45677888899999999997521          112678888899


Q ss_pred             eEEEEEcCCCCceeEEEEecCCCCCeeEEEecCCCC--CcEEEEEecCCcEEEEEecCCCCeeeeeecccCCCCeEEEEe
Q 022111           80 QVIIWKEGNQNDWTQAHTFNDHKSSVNSIAWAPHEL--GLSLACGSSDGNISVFTATADGGWDTTRIDQAHPVGVTSVSW  157 (302)
Q Consensus        80 ~i~iwd~~~~~~~~~~~~~~~h~~~i~~l~~~pd~~--~~~l~sg~~d~~v~~~~~~~~~~~~~~~~~~~h~~~v~~~~~  157 (302)
                      .|.+||.....   ....+..|++++..+.|-|.++  -..|+.-....++.+|+..++..  ......+| ....++.+
T Consensus        90 rIil~d~~~~s---~~~~l~~~~~~~qdl~W~~~rd~Srd~LlaIh~ss~lvLwntdtG~k--~Wk~~ys~-~iLs~f~~  163 (1062)
T KOG1912|consen   90 RIILVDFVLAS---VINWLSHSNDSVQDLCWVPARDDSRDVLLAIHGSSTLVLWNTDTGEK--FWKYDYSH-EILSCFRV  163 (1062)
T ss_pred             cEEEEEehhhh---hhhhhcCCCcchhheeeeeccCcchheeEEecCCcEEEEEEccCCce--eeccccCC-cceeeeee
Confidence            99999986542   3345777899999999965432  24677777788999997665432  22222233 23455777


Q ss_pred             CCCCCCCceeecccCCCceeEEEe------eCCCcEEEEEEecCccccccc--ccc--ccCC------Cce---eEEEee
Q 022111          158 APAMAPGALVGLGLLDPVQKLASC------GCDNTVKVWKMYNGIWKMDCF--PAL--QMHS------DWV---RSVAWA  218 (302)
Q Consensus       158 ~~~~~~~~~~~~~~~~~~~~l~s~------~~D~~v~iwd~~~~~~~~~~~--~~~--~~h~------~~v---~~v~~~  218 (302)
                      .|.....-++.    .-+.+++++      -.|...+.+.+.+........  .+-  ..+.      ..|   ..++|+
T Consensus       164 DPfd~rh~~~l----~s~g~vl~~~~l~~sep~~pgk~~qI~sd~Sdl~~lere~at~ns~ts~~~sa~fity~a~faf~  239 (1062)
T KOG1912|consen  164 DPFDSRHFCVL----GSKGFVLSCKDLGLSEPDVPGKEFQITSDHSDLAHLERETATGNSTTSTPASAYFITYCAQFAFS  239 (1062)
T ss_pred             CCCCcceEEEE----ccCceEEEEeccCCCCCCCCceeEEEecCccchhhhhhhhhccccccCCCcchhHHHHHHhhhcC
Confidence            77532111100    000111111      112223333332210000000  000  0011      011   235667


Q ss_pred             CCCCCCccEEEEEecCCeEEEEEeccCCcceeeeeeccCCCcEEEEEEccCC--CEEEEecCC-ceEEeeec
Q 022111          219 PNLGLPKSTIASASQDGTVVIWTCAKEGEQWEGRVLKDFKTPVWSVSWSLTG--NLLAVADAN-NVTLWKEA  287 (302)
Q Consensus       219 p~~~~~~~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~spdg--~~la~~~~d-~i~~w~~~  287 (302)
                      |.-    +.++-....+.+.|+|++-+..  ...+.- ..+.+.-+.+-|++  +.|-+...| .+.||...
T Consensus       240 p~~----rn~lfi~~prellv~dle~~~~--l~vvpi-er~~akfv~vlP~~~rd~LfclH~nG~ltirvrk  304 (1062)
T KOG1912|consen  240 PHW----RNILFITFPRELLVFDLEYECC--LAVVPI-ERGGAKFVDVLPDPRRDALFCLHSNGRLTIRVRK  304 (1062)
T ss_pred             hhh----hceEEEEeccceEEEcchhhce--eEEEEe-ccCCcceeEeccCCCcceEEEEecCCeEEEEEee
Confidence            753    4455566788899999875421  111111 12233345666765  566777777 58888764

>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]

Probab=97.74  E-value=0.014  Score=57.39  Aligned_cols=201  Identities=14%  Similarity=0.263  Sum_probs=109.1

Q ss_pred             cccceeEEEEccCCCEEEEeeCCCcEEEEeec-----CCCc----------------eEEEEecC---------------
Q 022111           10 HEDTVHDVAMDFYGKRLATASSDSSIKIIGLS-----NSAS----------------QHLATLKG---------------   53 (302)
Q Consensus        10 h~~~v~~~~~s~~~~~l~s~~~d~~v~lw~~~-----~~~~----------------~~~~~~~~---------------   53 (302)
                      -...|.+++||||++.++-.....++.+-...     ..+.                +.-.+|.|               
T Consensus       108 vd~GI~aaswS~Dee~l~liT~~~tll~mT~~f~~i~E~~L~~d~~~~sk~v~VGwGrkeTqfrgs~gr~~~~~~~~~ek  187 (1265)
T KOG1920|consen  108 VDNGISAASWSPDEELLALITGRQTLLFMTKDFEPIAEKPLDADDERKSKFVNVGWGRKETQFRGSEGRQAARQKIEKEK  187 (1265)
T ss_pred             ccCceEEEeecCCCcEEEEEeCCcEEEEEeccccchhccccccccccccccceecccccceeeecchhhhcccccccccc
Confidence            35678899999999999888877777664321     0000                00112221               


Q ss_pred             -------cccCeEEEEeeCCCCCCEEEEE----eCC-CeEEEEEcCCCCceeEEEEecCCCCCeeEEEecCCCCCcEEEE
Q 022111           54 -------HRGPVWQVAWAHPKFGSILASC----SYD-GQVIIWKEGNQNDWTQAHTFNDHKSSVNSIAWAPHELGLSLAC  121 (302)
Q Consensus        54 -------h~~~v~~v~~~~~~~~~~l~s~----s~D-~~i~iwd~~~~~~~~~~~~~~~h~~~i~~l~~~pd~~~~~l~s  121 (302)
                             |++. ..|+|.-  +|.++|..    ..+ +.+++||-+..    .-.+-....+.-.+++|-|.  |..+|+
T Consensus       188 ~~~~~~~~~~~-~~IsWRg--Dg~~fAVs~~~~~~~~RkirV~drEg~----Lns~se~~~~l~~~LsWkPs--gs~iA~  258 (1265)
T KOG1920|consen  188 ALEQIEQDDHK-TSISWRG--DGEYFAVSFVESETGTRKIRVYDREGA----LNSTSEPVEGLQHSLSWKPS--GSLIAA  258 (1265)
T ss_pred             cccchhhccCC-ceEEEcc--CCcEEEEEEEeccCCceeEEEecccch----hhcccCcccccccceeecCC--CCeEee
Confidence                   1111 2488853  48888762    224 89999986521    10111112233468899995  666665


Q ss_pred             E---ecCCcEEEEEecC--CCCeeeeeecccCCCCeEEEEeCCCCCCCceeecccCCCceeEEE---eeCCCcEEEEEEe
Q 022111          122 G---SSDGNISVFTATA--DGGWDTTRIDQAHPVGVTSVSWAPAMAPGALVGLGLLDPVQKLAS---CGCDNTVKVWKMY  193 (302)
Q Consensus       122 g---~~d~~v~~~~~~~--~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~s---~~~D~~v~iwd~~  193 (302)
                      -   ..|+.|.+|.-+.  .+.+.+. .. .....+..++|+.+.              ..||.   +.....|++|-..
T Consensus       259 iq~~~sd~~IvffErNGL~hg~f~l~-~p-~de~~ve~L~Wns~s--------------diLAv~~~~~e~~~v~lwt~~  322 (1265)
T KOG1920|consen  259 IQCKTSDSDIVFFERNGLRHGEFVLP-FP-LDEKEVEELAWNSNS--------------DILAVVTSNLENSLVQLWTTG  322 (1265)
T ss_pred             eeecCCCCcEEEEecCCccccccccC-Cc-ccccchheeeecCCC--------------CceeeeecccccceEEEEEec
Confidence            4   3455788885431  1111110 10 112238899998753              55555   4555569999987


Q ss_pred             cCccccccccccccCCCceeEEEeeCCCCCCccEEEEEecCCeEEEEEe
Q 022111          194 NGIWKMDCFPALQMHSDWVRSVAWAPNLGLPKSTIASASQDGTVVIWTC  242 (302)
Q Consensus       194 ~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~l~s~s~D~~i~iwd~  242 (302)
                      +-.|-+++...+.+-  ..  +.|+|-.   ...+..-.++|..-+++.
T Consensus       323 NyhWYLKq~l~~~~~--~~--~~W~p~~---~~~L~v~~~sG~~~v~~~  364 (1265)
T KOG1920|consen  323 NYHWYLKQELQFSQK--AL--LMWDPVT---EKTLHVLRESGQRLVRDF  364 (1265)
T ss_pred             CeEEEEEEEEecccc--cc--ccccCCC---ceeEEEEecCCcEEEEEE
Confidence            766655443322211  11  7788853   233333335555555443

>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species

Probab=97.71  E-value=0.021  Score=47.72  Aligned_cols=226  Identities=13%  Similarity=0.105  Sum_probs=124.0

Q ss_pred             EEEEcc-CCCEEEEeeCCCcEEEEeecCCCceEEEEecCcccCeEEEEeeCCCCCCEEEEEeCCCeEEEEEcCCCCceeE
Q 022111           16 DVAMDF-YGKRLATASSDSSIKIIGLSNSASQHLATLKGHRGPVWQVAWAHPKFGSILASCSYDGQVIIWKEGNQNDWTQ   94 (302)
Q Consensus        16 ~~~~s~-~~~~l~s~~~d~~v~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~s~D~~i~iwd~~~~~~~~~   94 (302)
                      +.+|.+ ++.++.+--..+.|..|+...... ....+.+    ...+.+..+ ++. |+.+..++ +.++|+.++. ...
T Consensus         4 gp~~d~~~g~l~~~D~~~~~i~~~~~~~~~~-~~~~~~~----~~G~~~~~~-~g~-l~v~~~~~-~~~~d~~~g~-~~~   74 (246)
T PF08450_consen    4 GPVWDPRDGRLYWVDIPGGRIYRVDPDTGEV-EVIDLPG----PNGMAFDRP-DGR-LYVADSGG-IAVVDPDTGK-VTV   74 (246)
T ss_dssp             EEEEETTTTEEEEEETTTTEEEEEETTTTEE-EEEESSS----EEEEEEECT-TSE-EEEEETTC-EEEEETTTTE-EEE
T ss_pred             ceEEECCCCEEEEEEcCCCEEEEEECCCCeE-EEEecCC----CceEEEEcc-CCE-EEEEEcCc-eEEEecCCCc-EEE
Confidence            456787 666666666788888888765322 2222222    456666533 244 44555554 4555887653 233


Q ss_pred             EEEe--cC-CCCCeeEEEecCCCCCcEEEEEecCCc------EEEEEecCCCCeeeeeecccCCCCeEEEEeCCCCCCCc
Q 022111           95 AHTF--ND-HKSSVNSIAWAPHELGLSLACGSSDGN------ISVFTATADGGWDTTRIDQAHPVGVTSVSWAPAMAPGA  165 (302)
Q Consensus        95 ~~~~--~~-h~~~i~~l~~~pd~~~~~l~sg~~d~~------v~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~  165 (302)
                      +...  .. .....+.+++.|+  |.+.++......      -++|.+...+..... .  ......+.++|+|++    
T Consensus        75 ~~~~~~~~~~~~~~ND~~vd~~--G~ly~t~~~~~~~~~~~~g~v~~~~~~~~~~~~-~--~~~~~pNGi~~s~dg----  145 (246)
T PF08450_consen   75 LADLPDGGVPFNRPNDVAVDPD--GNLYVTDSGGGGASGIDPGSVYRIDPDGKVTVV-A--DGLGFPNGIAFSPDG----  145 (246)
T ss_dssp             EEEEETTCSCTEEEEEEEE-TT--S-EEEEEECCBCTTCGGSEEEEEEETTSEEEEE-E--EEESSEEEEEEETTS----
T ss_pred             EeeccCCCcccCCCceEEEcCC--CCEEEEecCCCccccccccceEEECCCCeEEEE-e--cCcccccceEECCcc----
Confidence            3333  12 3456789999887  655555443321      345544443222211 1  112335788898864    


Q ss_pred             eeecccCCCceeEEEeeCCCcEEEEEEecCccccc---cccccccCCCceeEEEeeCCCCCCccEEEEEecCCeEEEEEe
Q 022111          166 LVGLGLLDPVQKLASCGCDNTVKVWKMYNGIWKMD---CFPALQMHSDWVRSVAWAPNLGLPKSTIASASQDGTVVIWTC  242 (302)
Q Consensus       166 ~~~~~~~~~~~~l~s~~~D~~v~iwd~~~~~~~~~---~~~~~~~h~~~v~~v~~~p~~~~~~~~l~s~s~D~~i~iwd~  242 (302)
                               ..++++-+..+.|..+++......+.   .+..+..-.+..-.+++..++    +..++.-..+.|.+++.
T Consensus       146 ---------~~lyv~ds~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G----~l~va~~~~~~I~~~~p  212 (246)
T PF08450_consen  146 ---------KTLYVADSFNGRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDG----NLWVADWGGGRIVVFDP  212 (246)
T ss_dssp             ---------SEEEEEETTTTEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS-----EEEEEETTTEEEEEET
T ss_pred             ---------hheeecccccceeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCC----CEEEEEcCCCEEEEECC
Confidence                     24556778888899999874322111   112222222346678888875    66777777888999987


Q ss_pred             ccCCcceeeeeeccCCCcEEEEEEc-cCCCEEEEe
Q 022111          243 AKEGEQWEGRVLKDFKTPVWSVSWS-LTGNLLAVA  276 (302)
Q Consensus       243 ~~~~~~~~~~~~~~~~~~v~~~~~s-pdg~~la~~  276 (302)
                      +.  .. ...+... ...+.+++|. |+.+.|-+.
T Consensus       213 ~G--~~-~~~i~~p-~~~~t~~~fgg~~~~~L~vT  243 (246)
T PF08450_consen  213 DG--KL-LREIELP-VPRPTNCAFGGPDGKTLYVT  243 (246)
T ss_dssp             TS--CE-EEEEE-S-SSSEEEEEEESTTSSEEEEE
T ss_pred             Cc--cE-EEEEcCC-CCCEEEEEEECCCCCEEEEE
Confidence            62  11 1222222 2368899994 666655443

These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....

>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]

Probab=97.70  E-value=4.4e-05  Score=71.95  Aligned_cols=207  Identities=15%  Similarity=0.183  Sum_probs=121.3

Q ss_pred             eEEEEecCcccCeEEEEeeCCCCCCEEEEEeCCCeEEEEEcCCCCceeEEEEecCCCCCeeEEEecCCCCCcEEEEEecC
Q 022111           46 QHLATLKGHRGPVWQVAWAHPKFGSILASCSYDGQVIIWKEGNQNDWTQAHTFNDHKSSVNSIAWAPHELGLSLACGSSD  125 (302)
Q Consensus        46 ~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~h~~~i~~l~~~pd~~~~~l~sg~~d  125 (302)
                      +...++..|....++++|+..  .+.|+.|+..|.|+++++.++.   .......|+.+|+-+.=+.|. ..+|.+.+..
T Consensus      1092 r~w~~frd~~~~fTc~afs~~--~~hL~vG~~~Geik~~nv~sG~---~e~s~ncH~SavT~vePs~dg-s~~Ltsss~S 1165 (1516)
T KOG1832|consen 1092 RSWRSFRDETALFTCIAFSGG--TNHLAVGSHAGEIKIFNVSSGS---MEESVNCHQSAVTLVEPSVDG-STQLTSSSSS 1165 (1516)
T ss_pred             ccchhhhccccceeeEEeecC--CceEEeeeccceEEEEEccCcc---ccccccccccccccccccCCc-ceeeeecccc
Confidence            345678889999999999864  5789999999999999997763   344567899999988766663 2344444444


Q ss_pred             C-cEEEEEecCCCCeeeeeecccCCC-CeEEEEeCCCCCCCceeecccCCCceeEEEeeCCCcEEEEEEecCcccccccc
Q 022111          126 G-NISVFTATADGGWDTTRIDQAHPV-GVTSVSWAPAMAPGALVGLGLLDPVQKLASCGCDNTVKVWKMYNGIWKMDCFP  203 (302)
Q Consensus       126 ~-~v~~~~~~~~~~~~~~~~~~~h~~-~v~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~D~~v~iwd~~~~~~~~~~~~  203 (302)
                      . -..+|++.....       ..|.. .-.++.|+-..              .+-+.|.......|||+.++....+.+.
T Consensus      1166 ~PlsaLW~~~s~~~-------~~Hsf~ed~~vkFsn~~--------------q~r~~gt~~d~a~~YDvqT~~~l~tylt 1224 (1516)
T KOG1832|consen 1166 SPLSALWDASSTGG-------PRHSFDEDKAVKFSNSL--------------QFRALGTEADDALLYDVQTCSPLQTYLT 1224 (1516)
T ss_pred             CchHHHhccccccC-------ccccccccceeehhhhH--------------HHHHhcccccceEEEecccCcHHHHhcC
Confidence            4 566888764221       12322 23455565321              1222233335688999988742212111


Q ss_pred             ccccCCCceeEEEeeCCCCCCccEEEEEecCCeEEEEEeccCCcceeeeeeccCCCcEEEEEEccCCCEEEEecCCceEE
Q 022111          204 ALQMHSDWVRSVAWAPNLGLPKSTIASASQDGTVVIWTCAKEGEQWEGRVLKDFKTPVWSVSWSLTGNLLAVADANNVTL  283 (302)
Q Consensus       204 ~~~~h~~~v~~v~~~p~~~~~~~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~la~~~~d~i~~  283 (302)
                      ...+....-++..|+|+.    ..|+   .||-  +||++......   ....+.. -.+-.|+|.|+.++.-+    .|
T Consensus      1225 ~~~~~~y~~n~a~FsP~D----~LIl---ndGv--LWDvR~~~aIh---~FD~ft~-~~~G~FHP~g~eVIINS----EI 1287 (1516)
T KOG1832|consen 1225 DTVTSSYSNNLAHFSPCD----TLIL---NDGV--LWDVRIPEAIH---RFDQFTD-YGGGGFHPSGNEVIINS----EI 1287 (1516)
T ss_pred             cchhhhhhccccccCCCc----ceEe---eCce--eeeeccHHHHh---hhhhhee-cccccccCCCceEEeec----hh
Confidence            111222233788999973    3332   4664  69998642210   0112221 12346999999887764    46


Q ss_pred             eeecCCceEEEee
Q 022111          284 WKEAVDGEWQQVS  296 (302)
Q Consensus       284 w~~~~~~~~~~~~  296 (302)
                      ||+-+...++.++
T Consensus      1288 wD~RTF~lLh~VP 1300 (1516)
T KOG1832|consen 1288 WDMRTFKLLHSVP 1300 (1516)
T ss_pred             hhhHHHHHHhcCc
Confidence            6654444444333

>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL

Probab=97.70  E-value=0.033  Score=49.74  Aligned_cols=231  Identities=12%  Similarity=0.105  Sum_probs=106.5

Q ss_pred             CCEEEEeeCCCcEEEEeecCCCceEEEEecCcccCeEE-EEeeCCCCCCEEEEEeCCCeEEEEEcCCCCceeEEEEecCC
Q 022111           23 GKRLATASSDSSIKIIGLSNSASQHLATLKGHRGPVWQ-VAWAHPKFGSILASCSYDGQVIIWKEGNQNDWTQAHTFNDH  101 (302)
Q Consensus        23 ~~~l~s~~~d~~v~lw~~~~~~~~~~~~~~~h~~~v~~-v~~~~~~~~~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~h  101 (302)
                      +..++.++.++.+.-+|..++  +.+...... +.+.+ ...    .+..++.++.++.+..||.+++..   +.++...
T Consensus       105 ~~~v~v~~~~g~l~ald~~tG--~~~W~~~~~-~~~~~~p~v----~~~~v~v~~~~g~l~a~d~~tG~~---~W~~~~~  174 (377)
T TIGR03300       105 GGLVFVGTEKGEVIALDAEDG--KELWRAKLS-SEVLSPPLV----ANGLVVVRTNDGRLTALDAATGER---LWTYSRV  174 (377)
T ss_pred             CCEEEEEcCCCEEEEEECCCC--cEeeeeccC-ceeecCCEE----ECCEEEEECCCCeEEEEEcCCCce---eeEEccC
Confidence            445556666666666665432  222221111 11111 111    134566677889999999876532   2222211


Q ss_pred             CCCeeEEE--ecCCCCCcEEEEEecCCcEEEEEecCCCCeeeeeecccCCC---CeEEEEeCCCCCCCceeecccCCCce
Q 022111          102 KSSVNSIA--WAPHELGLSLACGSSDGNISVFTATADGGWDTTRIDQAHPV---GVTSVSWAPAMAPGALVGLGLLDPVQ  176 (302)
Q Consensus       102 ~~~i~~l~--~~pd~~~~~l~sg~~d~~v~~~~~~~~~~~~~~~~~~~h~~---~v~~~~~~~~~~~~~~~~~~~~~~~~  176 (302)
                      ...+ .+.  -+|-..+..++.+..++.+..+|..++..  ..........   .+..+... ..  ..     .. .+.
T Consensus       175 ~~~~-~~~~~~sp~~~~~~v~~~~~~g~v~ald~~tG~~--~W~~~~~~~~g~~~~~~~~~~-~~--~p-----~~-~~~  242 (377)
T TIGR03300       175 TPAL-TLRGSASPVIADGGVLVGFAGGKLVALDLQTGQP--LWEQRVALPKGRTELERLVDV-DG--DP-----VV-DGG  242 (377)
T ss_pred             CCce-eecCCCCCEEECCEEEEECCCCEEEEEEccCCCE--eeeeccccCCCCCchhhhhcc-CC--cc-----EE-ECC
Confidence            1111 000  01110012567777788888887654321  1111100000   00000000 00  00     00 134


Q ss_pred             eEEEeeCCCcEEEEEEecCccccccccccccCCCceeEEEeeCCCCCCccEEEEEecCCeEEEEEeccCCcceeeeeecc
Q 022111          177 KLASCGCDNTVKVWKMYNGIWKMDCFPALQMHSDWVRSVAWAPNLGLPKSTIASASQDGTVVIWTCAKEGEQWEGRVLKD  256 (302)
Q Consensus       177 ~l~s~~~D~~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~  256 (302)
                      .++.++.++.++.||+.++...-..  ......    ....      .+..|..++.||.|..+|.......|....+..
T Consensus       243 ~vy~~~~~g~l~a~d~~tG~~~W~~--~~~~~~----~p~~------~~~~vyv~~~~G~l~~~d~~tG~~~W~~~~~~~  310 (377)
T TIGR03300       243 QVYAVSYQGRVAALDLRSGRVLWKR--DASSYQ----GPAV------DDNRLYVTDADGVVVALDRRSGSELWKNDELKY  310 (377)
T ss_pred             EEEEEEcCCEEEEEECCCCcEEEee--ccCCcc----CceE------eCCEEEEECCCCeEEEEECCCCcEEEccccccC
Confidence            6777788999999999876311110  011111    1111      135677888999999999876544443211111


Q ss_pred             CCCcEEEEEEccCCCEEEEecCC-ceEEeeecCCce
Q 022111          257 FKTPVWSVSWSLTGNLLAVADAN-NVTLWKEAVDGE  291 (302)
Q Consensus       257 ~~~~v~~~~~spdg~~la~~~~d-~i~~w~~~~~~~  291 (302)
                        ....+...  .+..|.+++.+ .+.+++......
T Consensus       311 --~~~ssp~i--~g~~l~~~~~~G~l~~~d~~tG~~  342 (377)
T TIGR03300       311 --RQLTAPAV--VGGYLVVGDFEGYLHWLSREDGSF  342 (377)
T ss_pred             --CccccCEE--ECCEEEEEeCCCEEEEEECCCCCE
Confidence              01111111  35567777666 688888654333

Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.

>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals

Probab=97.67  E-value=0.039  Score=49.53  Aligned_cols=264  Identities=15%  Similarity=0.186  Sum_probs=127.5

Q ss_pred             ceeEEEEccCCCEEEEeeCCCcEEEEeecCCC--c---------------------------------------eEEEEe
Q 022111           13 TVHDVAMDFYGKRLATASSDSSIKIIGLSNSA--S---------------------------------------QHLATL   51 (302)
Q Consensus        13 ~v~~~~~s~~~~~l~s~~~d~~v~lw~~~~~~--~---------------------------------------~~~~~~   51 (302)
                      .|+.+.|.++..-||.|-..|.|-||.+....  .                                       .+...+
T Consensus         3 ~v~~vs~a~~t~Elav~~~~GeVv~~k~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~di~~r~~~~~~~gf~P~~l~   82 (395)
T PF08596_consen    3 SVTHVSFAPETLELAVGLESGEVVLFKFGKNQNYGNREQPPDLDYNFRRFSLNNSPGKLTDISDRAPPSLKEGFLPLTLL   82 (395)
T ss_dssp             -EEEEEEETTTTEEEEEETTS-EEEEEEEE------------------S--GGGSS-SEEE-GGG--TT-SEEEEEEEEE
T ss_pred             eEEEEEecCCCceEEEEccCCcEEEEEcccCCCCCccCCCcccCcccccccccCCCcceEEehhhCCcccccccCchhhe
Confidence            58889999988889999999999998873110  0                                       111223


Q ss_pred             cCcccCeEEEEeeCCCCCCEEEEEeCCCeEEEEEcCCCCceeEEEEecC------CCCCeeEEEec---CCCCC---cEE
Q 022111           52 KGHRGPVWQVAWAHPKFGSILASCSYDGQVIIWKEGNQNDWTQAHTFND------HKSSVNSIAWA---PHELG---LSL  119 (302)
Q Consensus        52 ~~h~~~v~~v~~~~~~~~~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~------h~~~i~~l~~~---pd~~~---~~l  119 (302)
                      ....++|++++.+.   =-.+|.|.++|.+.|-|++...-. ....+..      ....|+++.|+   ..+++   ..+
T Consensus        83 ~~~~g~vtal~~S~---iGFvaigy~~G~l~viD~RGPavI-~~~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~ySSi~L  158 (395)
T PF08596_consen   83 DAKQGPVTALKNSD---IGFVAIGYESGSLVVIDLRGPAVI-YNENIRESFLSKSSSSYVTSIEFSVMTLGGDGYSSICL  158 (395)
T ss_dssp             ---S-SEEEEEE-B---TSEEEEEETTSEEEEEETTTTEEE-EEEEGGG--T-SS----EEEEEEEEEE-TTSSSEEEEE
T ss_pred             eccCCcEeEEecCC---CcEEEEEecCCcEEEEECCCCeEE-eeccccccccccccccCeeEEEEEEEecCCCcccceEE
Confidence            34468899999863   237899999999999999765321 1122222      34578888886   22223   468


Q ss_pred             EEEecCCcEEEEEecC--CCCeeeeeec--ccCCCCeEEEE-eCCCCCCCceeec-----ccCC--C-ceeEEEeeCCCc
Q 022111          120 ACGSSDGNISVFTATA--DGGWDTTRID--QAHPVGVTSVS-WAPAMAPGALVGL-----GLLD--P-VQKLASCGCDNT  186 (302)
Q Consensus       120 ~sg~~d~~v~~~~~~~--~~~~~~~~~~--~~h~~~v~~~~-~~~~~~~~~~~~~-----~~~~--~-~~~l~s~~~D~~  186 (302)
                      .+|...|.+.+|.+..  .+.+......  ..+..++..+. ++.+... ...+.     .+..  . ..+++.++ +..
T Consensus       159 ~vGTn~G~v~~fkIlp~~~g~f~v~~~~~~~~~~~~i~~I~~i~~~~G~-~a~At~~~~~~l~~g~~i~g~vVvvS-e~~  236 (395)
T PF08596_consen  159 LVGTNSGNVLTFKILPSSNGRFSVQFAGATTNHDSPILSIIPINADTGE-SALATISAMQGLSKGISIPGYVVVVS-ESD  236 (395)
T ss_dssp             EEEETTSEEEEEEEEE-GGG-EEEEEEEEE--SS----EEEEEETTT---B-B-BHHHHHGGGGT----EEEEEE--SSE
T ss_pred             EEEeCCCCEEEEEEecCCCCceEEEEeeccccCCCceEEEEEEECCCCC-cccCchhHhhccccCCCcCcEEEEEc-ccc
Confidence            8999999999998763  2223221111  12344444443 2111111 11110     0100  1 22444444 567


Q ss_pred             EEEEEEecCccccccccccccCCCceeEEEeeCCC-CCCccEEEEEecCCeEEEEEeccCCcceeeeeecc-CCCcEEEE
Q 022111          187 VKVWKMYNGIWKMDCFPALQMHSDWVRSVAWAPNL-GLPKSTIASASQDGTVVIWTCAKEGEQWEGRVLKD-FKTPVWSV  264 (302)
Q Consensus       187 v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~-~~~~~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~-~~~~v~~~  264 (302)
                      +|++.+.+.+.   ....+ ...-....+++-|-. ...+..|++-..+|.++++-+-..++.....+... ....+...
T Consensus       237 irv~~~~~~k~---~~K~~-~~~~~~~~~~vv~~~~~~~~~~Lv~l~~~G~i~i~SLP~Lkei~~~~l~~~~d~~~~~~s  312 (395)
T PF08596_consen  237 IRVFKPPKSKG---AHKSF-DDPFLCSSASVVPTISRNGGYCLVCLFNNGSIRIYSLPSLKEIKSVSLPPPLDSRRLSSS  312 (395)
T ss_dssp             EEEE-TT---E---EEEE--SS-EEEEEEEEEEEE-EEEEEEEEEEETTSEEEEEETTT--EEEEEE-SS---HHHHTT-
T ss_pred             eEEEeCCCCcc---cceee-ccccccceEEEEeecccCCceEEEEEECCCcEEEEECCCchHhhcccCCCcccccccccc
Confidence            99988754321   11111 111112233442200 01136788889999999998754332211111110 01123456


Q ss_pred             EEccCCCEEEEecCCc---eEEeee
Q 022111          265 SWSLTGNLLAVADANN---VTLWKE  286 (302)
Q Consensus       265 ~~spdg~~la~~~~d~---i~~w~~  286 (302)
                      .++++|+++.-.+...   +.+|..
T Consensus       313 sis~~Gdi~~~~gpsE~~l~sv~~~  337 (395)
T PF08596_consen  313 SISRNGDIFYWTGPSEIQLFSVWGE  337 (395)
T ss_dssp             EE-TTS-EEEE-SSSEEEEEEEES-
T ss_pred             EECCCCCEEEEeCcccEEEEEEEcc
Confidence            7899999988887654   455554

The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.

>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.63  E-value=0.012  Score=55.87  Aligned_cols=198  Identities=11%  Similarity=0.068  Sum_probs=112.9

Q ss_pred             CCEEEEEeCCCeEEEEEcCCCCceeEEEEecCCCCCeeEEEecCCCCCcEEEEEecCC-----cEEEEEecCCCC-e---
Q 022111           69 GSILASCSYDGQVIIWKEGNQNDWTQAHTFNDHKSSVNSIAWAPHELGLSLACGSSDG-----NISVFTATADGG-W---  139 (302)
Q Consensus        69 ~~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~h~~~i~~l~~~pd~~~~~l~sg~~d~-----~v~~~~~~~~~~-~---  139 (302)
                      +..+|.|+.+|.|-+.+-  .  ....+.|+.+...|-..-+.-+. ...|++.+.|.     .+++|++++..+ -   
T Consensus        35 ~~~vvigt~~G~V~~Ln~--s--~~~~~~fqa~~~siv~~L~~~~~-~~~L~sv~Ed~~~np~llkiw~lek~~~n~sP~  109 (933)
T KOG2114|consen   35 TGSVVIGTADGRVVILNS--S--FQLIRGFQAYEQSIVQFLYILNK-QNFLFSVGEDEQGNPVLLKIWDLEKVDKNNSPQ  109 (933)
T ss_pred             CceEEEeeccccEEEecc--c--ceeeehheecchhhhhHhhcccC-ceEEEEEeecCCCCceEEEEecccccCCCCCcc
Confidence            568999999999888752  1  23345566666553333344332 23566665554     588999874311 1   


Q ss_pred             ee--eeec---c-cCCCCeEEEEeCCCCCCCceeecccCCCceeEEEeeCCCcEEEEEEecCccccccccccccCCCcee
Q 022111          140 DT--TRID---Q-AHPVGVTSVSWAPAMAPGALVGLGLLDPVQKLASCGCDNTVKVWKMYNGIWKMDCFPALQMHSDWVR  213 (302)
Q Consensus       140 ~~--~~~~---~-~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~D~~v~iwd~~~~~~~~~~~~~~~~h~~~v~  213 (302)
                      -+  ..+.   . ..+.++++++.+.+              =+.+|.|=.+|.|..+.-+-..-......-....+++|+
T Consensus       110 c~~~~ri~~~~np~~~~p~s~l~Vs~~--------------l~~Iv~Gf~nG~V~~~~GDi~RDrgsr~~~~~~~~~pIT  175 (933)
T KOG2114|consen  110 CLYEHRIFTIKNPTNPSPASSLAVSED--------------LKTIVCGFTNGLVICYKGDILRDRGSRQDYSHRGKEPIT  175 (933)
T ss_pred             eeeeeeeeccCCCCCCCcceEEEEEcc--------------ccEEEEEecCcEEEEEcCcchhccccceeeeccCCCCce
Confidence            01  0100   0 01223333333322              256777778888888753210000001111123467899


Q ss_pred             EEEeeCCCCCCccEEEEEecCCeEEEEEeccCCcceeeeeeccCCCcEEEEEEccCCCEEEEecCCceEEeeecCCce
Q 022111          214 SVAWAPNLGLPKSTIASASQDGTVVIWTCAKEGEQWEGRVLKDFKTPVWSVSWSLTGNLLAVADANNVTLWKEAVDGE  291 (302)
Q Consensus       214 ~v~~~p~~~~~~~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~la~~~~d~i~~w~~~~~~~  291 (302)
                      .+.+.-++    ..++-+..-..|.+|.+.... + ....+..++.++.+.+|++....+++|++..+.+|+....|+
T Consensus       176 gL~~~~d~----~s~lFv~Tt~~V~~y~l~gr~-p-~~~~ld~~G~~lnCss~~~~t~qfIca~~e~l~fY~sd~~~~  247 (933)
T KOG2114|consen  176 GLALRSDG----KSVLFVATTEQVMLYSLSGRT-P-SLKVLDNNGISLNCSSFSDGTYQFICAGSEFLYFYDSDGRGP  247 (933)
T ss_pred             eeEEecCC----ceeEEEEecceeEEEEecCCC-c-ceeeeccCCccceeeecCCCCccEEEecCceEEEEcCCCcce
Confidence            99997765    332333344568899887432 2 123345667788899999876668899888999999876554

>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]

Probab=97.59  E-value=0.0023  Score=59.29  Aligned_cols=208  Identities=15%  Similarity=0.140  Sum_probs=118.9

Q ss_pred             cccCeEEEEeeCCCCCCEEEEEeCCCeEEEEEcCCCCceeEEEEecCCCCCeeEEEecCCCCCcEEEEEecCCcEEEEEe
Q 022111           54 HRGPVWQVAWAHPKFGSILASCSYDGQVIIWKEGNQNDWTQAHTFNDHKSSVNSIAWAPHELGLSLACGSSDGNISVFTA  133 (302)
Q Consensus        54 h~~~v~~v~~~~~~~~~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~h~~~i~~l~~~pd~~~~~l~sg~~d~~v~~~~~  133 (302)
                      |...|.--++..  .+++++-|+.-|.+-+|.-..+.  ....+..+..+.+..+..+++  ..++|.|+..+.|.+|.+
T Consensus        32 ~~~~v~lTc~ds--t~~~l~~GsS~G~lyl~~R~~~~--~~~~~~~~~~~~~~~~~vs~~--e~lvAagt~~g~V~v~ql  105 (726)
T KOG3621|consen   32 FPARVKLTCVDA--TEEYLAMGSSAGSVYLYNRHTGE--MRKLKNEGATGITCVRSVSSV--EYLVAAGTASGRVSVFQL  105 (726)
T ss_pred             CcceEEEEEeec--CCceEEEecccceEEEEecCchh--hhcccccCccceEEEEEecch--hHhhhhhcCCceEEeehh
Confidence            444444344433  37899999999999999754332  122233334556667778877  458999999999999987


Q ss_pred             cCCCCee---eeeecccCCCCeEEEEeCCCCCCCceeecccCCCceeEEEeeCCCcEEEEEEecCccccccccccccCCC
Q 022111          134 TADGGWD---TTRIDQAHPVGVTSVSWAPAMAPGALVGLGLLDPVQKLASCGCDNTVKVWKMYNGIWKMDCFPALQMHSD  210 (302)
Q Consensus       134 ~~~~~~~---~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~D~~v~iwd~~~~~~~~~~~~~~~~h~~  210 (302)
                      ....+-.   .....+.|+..|++++|++++              ..+.+|-.-|.|.+-.+.....-+...+.+.-..+
T Consensus       106 ~~~~p~~~~~~t~~d~~~~~rVTal~Ws~~~--------------~k~ysGD~~Gkv~~~~L~s~~~~~~~~q~il~~ds  171 (726)
T KOG3621|consen  106 NKELPRDLDYVTPCDKSHKCRVTALEWSKNG--------------MKLYSGDSQGKVVLTELDSRQAFLSKSQEILSEDS  171 (726)
T ss_pred             hccCCCcceeeccccccCCceEEEEEecccc--------------cEEeecCCCceEEEEEechhhhhccccceeeccCc
Confidence            6533222   233444578899999999864              88999999999988777652111111122223345


Q ss_pred             ceeEEEeeCCCCCCccEEEEEecCCeEEEEEeccCCcceeeeee-ccCCCc-EEEEEEccC----CCEEEEecCCceEEe
Q 022111          211 WVRSVAWAPNLGLPKSTIASASQDGTVVIWTCAKEGEQWEGRVL-KDFKTP-VWSVSWSLT----GNLLAVADANNVTLW  284 (302)
Q Consensus       211 ~v~~v~~~p~~~~~~~~l~s~s~D~~i~iwd~~~~~~~~~~~~~-~~~~~~-v~~~~~spd----g~~la~~~~d~i~~w  284 (302)
                      .|-.+++.-      .+|+.++.-+. .+++...+. .+  .+. +.-++. -....|=|.    ..-.+++++-+.|+|
T Consensus       172 ~IVQlD~~q------~~LLVStl~r~-~Lc~tE~et-i~--QIG~k~R~~~~~~GACF~~g~~~~q~~~IycaRPG~RlW  241 (726)
T KOG3621|consen  172 EIVQLDYLQ------SYLLVSTLTRC-ILCQTEAET-IT--QIGKKPRKSLIDFGACFFPGQCKAQKPQIYCARPGLRLW  241 (726)
T ss_pred             ceEEeeccc------ceehHhhhhhh-heeecchhH-HH--HhcCCCcCCccccceEEeeccccCCCceEEEecCCCceE
Confidence            566665532      23333333333 345544321 01  111 111111 122333332    233445557799999


Q ss_pred             eecCCce
Q 022111          285 KEAVDGE  291 (302)
Q Consensus       285 ~~~~~~~  291 (302)
                      ..+..|.
T Consensus       242 ead~~G~  248 (726)
T KOG3621|consen  242 EADFAGE  248 (726)
T ss_pred             Eeeccee
Confidence            9877665

>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL

Probab=97.56  E-value=0.048  Score=48.73  Aligned_cols=186  Identities=10%  Similarity=0.030  Sum_probs=93.6

Q ss_pred             CCEEEEeeCCCcEEEEeecCCCceEEEEecCcccCeE-----EEEeeCCCCCCEEEEEeCCCeEEEEEcCCCCceeEEEE
Q 022111           23 GKRLATASSDSSIKIIGLSNSASQHLATLKGHRGPVW-----QVAWAHPKFGSILASCSYDGQVIIWKEGNQNDWTQAHT   97 (302)
Q Consensus        23 ~~~l~s~~~d~~v~lw~~~~~~~~~~~~~~~h~~~v~-----~v~~~~~~~~~~l~s~s~D~~i~iwd~~~~~~~~~~~~   97 (302)
                      +..++.++.++.++.+|...+  +.+.........+.     .....    +..++.+..++.+..+|.+++..   ..+
T Consensus       145 ~~~v~v~~~~g~l~a~d~~tG--~~~W~~~~~~~~~~~~~~~sp~~~----~~~v~~~~~~g~v~ald~~tG~~---~W~  215 (377)
T TIGR03300       145 NGLVVVRTNDGRLTALDAATG--ERLWTYSRVTPALTLRGSASPVIA----DGGVLVGFAGGKLVALDLQTGQP---LWE  215 (377)
T ss_pred             CCEEEEECCCCeEEEEEcCCC--ceeeEEccCCCceeecCCCCCEEE----CCEEEEECCCCEEEEEEccCCCE---eee
Confidence            345666777888888887543  23333322111110     11111    23567778889999999876532   111


Q ss_pred             ecCC-----CC--CeeEEEecCCCCCcEEEEEecCCcEEEEEecCCCCeeeeeecccCCCCeEEEEeCCCCCCCceeecc
Q 022111           98 FNDH-----KS--SVNSIAWAPHELGLSLACGSSDGNISVFTATADGGWDTTRIDQAHPVGVTSVSWAPAMAPGALVGLG  170 (302)
Q Consensus        98 ~~~h-----~~--~i~~l~~~pd~~~~~l~sg~~d~~v~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~  170 (302)
                      ....     ..  ....+.-+|--.+..+..++.++.+..+|..++..  .....  ... ..    .|..         
T Consensus       216 ~~~~~~~g~~~~~~~~~~~~~p~~~~~~vy~~~~~g~l~a~d~~tG~~--~W~~~--~~~-~~----~p~~---------  277 (377)
T TIGR03300       216 QRVALPKGRTELERLVDVDGDPVVDGGQVYAVSYQGRVAALDLRSGRV--LWKRD--ASS-YQ----GPAV---------  277 (377)
T ss_pred             eccccCCCCCchhhhhccCCccEEECCEEEEEEcCCEEEEEECCCCcE--EEeec--cCC-cc----CceE---------
Confidence            1100     00  00001011110123677788899999998764321  11111  000 00    0100         


Q ss_pred             cCCCceeEEEeeCCCcEEEEEEecCccccccccccccCCCceeEEEeeCCCCCCccEEEEEecCCeEEEEEeccCCc
Q 022111          171 LLDPVQKLASCGCDNTVKVWKMYNGIWKMDCFPALQMHSDWVRSVAWAPNLGLPKSTIASASQDGTVVIWTCAKEGE  247 (302)
Q Consensus       171 ~~~~~~~l~s~~~D~~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~l~s~s~D~~i~iwd~~~~~~  247 (302)
                         .+..++.++.|+.+..+|..++...... ..+...  ...+...      .+..|..++.+|.|.++|.++...
T Consensus       278 ---~~~~vyv~~~~G~l~~~d~~tG~~~W~~-~~~~~~--~~ssp~i------~g~~l~~~~~~G~l~~~d~~tG~~  342 (377)
T TIGR03300       278 ---DDNRLYVTDADGVVVALDRRSGSELWKN-DELKYR--QLTAPAV------VGGYLVVGDFEGYLHWLSREDGSF  342 (377)
T ss_pred             ---eCCEEEEECCCCeEEEEECCCCcEEEcc-ccccCC--ccccCEE------ECCEEEEEeCCCEEEEEECCCCCE
Confidence               1356777788999999999876311110 011111  1111111      135788999999999999876543

Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.

>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region

Probab=97.54  E-value=0.015  Score=41.64  Aligned_cols=103  Identities=22%  Similarity=0.301  Sum_probs=66.1

Q ss_pred             eeEEEEc---cCC-CEEEEeeCCCcEEEEeecCCCceEEEEecCcccCeEEEEeeCCCCCCEEEEEeCCCeEEEEEcCCC
Q 022111           14 VHDVAMD---FYG-KRLATASSDSSIKIIGLSNSASQHLATLKGHRGPVWQVAWAHPKFGSILASCSYDGQVIIWKEGNQ   89 (302)
Q Consensus        14 v~~~~~s---~~~-~~l~s~~~d~~v~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~s~D~~i~iwd~~~~   89 (302)
                      |+++++.   -|| +-|+.|+.|..||+|+-+    +.+..+..+ +.|.+++-..   +.+++.+-++|+|.+|+-.. 
T Consensus         2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~~----e~~~Ei~e~-~~v~~L~~~~---~~~F~Y~l~NGTVGvY~~~~-   72 (111)
T PF14783_consen    2 VTALCLFDFDGDGENELLVGSDDFEIRVFKGD----EIVAEITET-DKVTSLCSLG---GGRFAYALANGTVGVYDRSQ-   72 (111)
T ss_pred             eeEEEEEecCCCCcceEEEecCCcEEEEEeCC----cEEEEEecc-cceEEEEEcC---CCEEEEEecCCEEEEEeCcc-
Confidence            5666653   333 588899999999999743    345555543 4577777643   46899999999999997532 


Q ss_pred             CceeEEEEecCCCCCeeEEEecC-CCCC-cEEEEEecCCcEEE
Q 022111           90 NDWTQAHTFNDHKSSVNSIAWAP-HELG-LSLACGSSDGNISV  130 (302)
Q Consensus        90 ~~~~~~~~~~~h~~~i~~l~~~p-d~~~-~~l~sg~~d~~v~~  130 (302)
                      ..|.    .+ -+..+.++.+.. +..| ..|++|-.+|.|-+
T Consensus        73 RlWR----iK-SK~~~~~~~~~D~~gdG~~eLI~GwsnGkve~  110 (111)
T PF14783_consen   73 RLWR----IK-SKNQVTSMAFYDINGDGVPELIVGWSNGKVEV  110 (111)
T ss_pred             eeee----ec-cCCCeEEEEEEcCCCCCceEEEEEecCCeEEe
Confidence            2232    22 233366666542 2112 36888888887753

>smart00320 WD40 WD40 repeats

Probab=97.52  E-value=0.00017  Score=40.18  Aligned_cols=35  Identities=43%  Similarity=0.659  Sum_probs=29.8

Q ss_pred             cccccCCCceeEEEeeCCCCCCccEEEEEecCCeEEEEE
Q 022111          203 PALQMHSDWVRSVAWAPNLGLPKSTIASASQDGTVVIWT  241 (302)
Q Consensus       203 ~~~~~h~~~v~~v~~~p~~~~~~~~l~s~s~D~~i~iwd  241 (302)
                      ..+..|...|.+++|+|++    ..+++++.|+.+++|+
T Consensus         6 ~~~~~~~~~i~~~~~~~~~----~~~~~~~~d~~~~~~~   40 (40)
T smart00320        6 KTLKGHTGPVTSVAFSPDG----KYLASASDDGTIKLWD   40 (40)
T ss_pred             EEEEecCCceeEEEECCCC----CEEEEecCCCeEEEcC
Confidence            3455788899999999974    7899999999999995

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.

>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]

Probab=97.45  E-value=0.013  Score=55.82  Aligned_cols=107  Identities=16%  Similarity=0.229  Sum_probs=74.3

Q ss_pred             EEEccCCCEEEEee----CCCcEEEEeecCCCceEEEEecCcccCeEEEEeeCCCCCCEEEEEeCCCeEEEEEcCCCCce
Q 022111           17 VAMDFYGKRLATAS----SDSSIKIIGLSNSASQHLATLKGHRGPVWQVAWAHPKFGSILASCSYDGQVIIWKEGNQNDW   92 (302)
Q Consensus        17 ~~~s~~~~~l~s~~----~d~~v~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~s~D~~i~iwd~~~~~~~   92 (302)
                      .+|+|...++|.++    ..|.|.||--.+++...+ +..-|   ++++||.|.  --+|+.|=.-|.+.+|...+.   
T Consensus        21 ~SWHPsePlfAVA~fS~er~GSVtIfadtGEPqr~V-t~P~h---atSLCWHpe--~~vLa~gwe~g~~~v~~~~~~---   91 (1416)
T KOG3617|consen   21 SSWHPSEPLFAVASFSPERGGSVTIFADTGEPQRDV-TYPVH---ATSLCWHPE--EFVLAQGWEMGVSDVQKTNTT---   91 (1416)
T ss_pred             cccCCCCceeEEEEecCCCCceEEEEecCCCCCccc-cccee---hhhhccChH--HHHHhhccccceeEEEecCCc---
Confidence            56899888888776    567788884333222111 12223   456999653  346778878888999976442   


Q ss_pred             eEEEEecCCCCCeeEEEecCCCCCcEEEEEecCCcEEEEEec
Q 022111           93 TQAHTFNDHKSSVNSIAWAPHELGLSLACGSSDGNISVFTAT  134 (302)
Q Consensus        93 ~~~~~~~~h~~~i~~l~~~pd~~~~~l~sg~~d~~v~~~~~~  134 (302)
                      .....-..|..+|..+.|||+  |..+.++..-|.+.+|...
T Consensus        92 e~htv~~th~a~i~~l~wS~~--G~~l~t~d~~g~v~lwr~d  131 (1416)
T KOG3617|consen   92 ETHTVVETHPAPIQGLDWSHD--GTVLMTLDNPGSVHLWRYD  131 (1416)
T ss_pred             eeeeeccCCCCCceeEEecCC--CCeEEEcCCCceeEEEEee
Confidence            122233459999999999998  7799999999999999654

>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]

Probab=97.43  E-value=0.0013  Score=60.88  Aligned_cols=121  Identities=17%  Similarity=0.239  Sum_probs=82.9

Q ss_pred             cccceeEEEEccCCCEEEEeeCCCcEEEEeecCCCceEEEEecCcccCeEEEEeeCCCCCCEEEEEeCCCeEEEEEcCCC
Q 022111           10 HEDTVHDVAMDFYGKRLATASSDSSIKIIGLSNSASQHLATLKGHRGPVWQVAWAHPKFGSILASCSYDGQVIIWKEGNQ   89 (302)
Q Consensus        10 h~~~v~~~~~s~~~~~l~s~~~d~~v~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~s~D~~i~iwd~~~~   89 (302)
                      |...|.=-|++..+++++-|+.-|.+++|+...+.. .+....+-.+.+..++.++.  ..++|.|+..+.|.++-++..
T Consensus        32 ~~~~v~lTc~dst~~~l~~GsS~G~lyl~~R~~~~~-~~~~~~~~~~~~~~~~vs~~--e~lvAagt~~g~V~v~ql~~~  108 (726)
T KOG3621|consen   32 FPARVKLTCVDATEEYLAMGSSAGSVYLYNRHTGEM-RKLKNEGATGITCVRSVSSV--EYLVAAGTASGRVSVFQLNKE  108 (726)
T ss_pred             CcceEEEEEeecCCceEEEecccceEEEEecCchhh-hcccccCccceEEEEEecch--hHhhhhhcCCceEEeehhhcc
Confidence            444454446677899999999999999998754321 12223333334445555542  578888999999999977654


Q ss_pred             CceeEEEEe---cCCCCCeeEEEecCCCCCcEEEEEecCCcEEEEEecC
Q 022111           90 NDWTQAHTF---NDHKSSVNSIAWAPHELGLSLACGSSDGNISVFTATA  135 (302)
Q Consensus        90 ~~~~~~~~~---~~h~~~i~~l~~~pd~~~~~l~sg~~d~~v~~~~~~~  135 (302)
                      .+......-   +.|...|+++.|+++  +..+.+|...|+|.+-.+..
T Consensus       109 ~p~~~~~~t~~d~~~~~rVTal~Ws~~--~~k~ysGD~~Gkv~~~~L~s  155 (726)
T KOG3621|consen  109 LPRDLDYVTPCDKSHKCRVTALEWSKN--GMKLYSGDSQGKVVLTELDS  155 (726)
T ss_pred             CCCcceeeccccccCCceEEEEEeccc--ccEEeecCCCceEEEEEech
Confidence            332222211   127789999999998  78999999999998876653

>smart00320 WD40 WD40 repeats

Probab=97.40  E-value=0.00063  Score=37.71  Aligned_cols=37  Identities=51%  Similarity=0.821  Sum_probs=30.8

Q ss_pred             EEEEecCcccCeEEEEeeCCCCCCEEEEEeCCCeEEEEE
Q 022111           47 HLATLKGHRGPVWQVAWAHPKFGSILASCSYDGQVIIWK   85 (302)
Q Consensus        47 ~~~~~~~h~~~v~~v~~~~~~~~~~l~s~s~D~~i~iwd   85 (302)
                      ++..+..|...|.+++|.+.  +.++++++.|+.+++|+
T Consensus         4 ~~~~~~~~~~~i~~~~~~~~--~~~~~~~~~d~~~~~~~   40 (40)
T smart00320        4 LLKTLKGHTGPVTSVAFSPD--GKYLASASDDGTIKLWD   40 (40)
T ss_pred             EEEEEEecCCceeEEEECCC--CCEEEEecCCCeEEEcC
Confidence            44566788899999999754  57899999999999995

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.

>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain

Probab=97.08  E-value=0.18  Score=44.38  Aligned_cols=199  Identities=12%  Similarity=0.110  Sum_probs=94.6

Q ss_pred             EEEEccCCCEEEEee-C-CCcEEEEeecCCCceEEEEecCcccCeEEEEeeCCCCCCEEEEEeCCCeEEEEEcCCCCcee
Q 022111           16 DVAMDFYGKRLATAS-S-DSSIKIIGLSNSASQHLATLKGHRGPVWQVAWAHPKFGSILASCSYDGQVIIWKEGNQNDWT   93 (302)
Q Consensus        16 ~~~~s~~~~~l~s~~-~-d~~v~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~s~D~~i~iwd~~~~~~~~   93 (302)
                      .+++++||++|+... . +..|-+.|+...  +.+..+.- .+...-...+ +  .... .-+.|+......+.+.+.. 
T Consensus       109 ~~~ls~dgk~l~V~n~~p~~~V~VvD~~~~--kvv~ei~v-p~~~~vy~t~-e--~~~~-~~~~Dg~~~~v~~d~~g~~-  180 (352)
T TIGR02658       109 MTSLTPDNKTLLFYQFSPSPAVGVVDLEGK--AFVRMMDV-PDCYHIFPTA-N--DTFF-MHCRDGSLAKVGYGTKGNP-  180 (352)
T ss_pred             eEEECCCCCEEEEecCCCCCEEEEEECCCC--cEEEEEeC-CCCcEEEEec-C--CccE-EEeecCceEEEEecCCCce-
Confidence            578999999888765 3 688999998653  34444321 1111111111 1  1222 2245555555443322211 


Q ss_pred             EEEE---ecCCCCCeeEE-EecCCCCCcEEEEEecCCcEEEEEecCCCC-----eeeeeeccc----CCCCeEEEEeCCC
Q 022111           94 QAHT---FNDHKSSVNSI-AWAPHELGLSLACGSSDGNISVFTATADGG-----WDTTRIDQA----HPVGVTSVSWAPA  160 (302)
Q Consensus        94 ~~~~---~~~h~~~i~~l-~~~pd~~~~~l~sg~~d~~v~~~~~~~~~~-----~~~~~~~~~----h~~~v~~~~~~~~  160 (302)
                      ...+   +..-+.++..= .|.+.. +.++... ..|+|.+-|+.....     +........    .+....-++++|+
T Consensus       181 ~~~~~~vf~~~~~~v~~rP~~~~~d-g~~~~vs-~eG~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~g~q~ia~~~d  258 (352)
T TIGR02658       181 KIKPTEVFHPEDEYLINHPAYSNKS-GRLVWPT-YTGKIFQIDLSSGDAKFLPAIEAFTEAEKADGWRPGGWQQVAYHRA  258 (352)
T ss_pred             EEeeeeeecCCccccccCCceEcCC-CcEEEEe-cCCeEEEEecCCCcceecceeeeccccccccccCCCcceeEEEcCC
Confidence            1111   11111111100 334421 4444333 339999988653321     111111000    1112222444443


Q ss_pred             CCCCceeecccCCCceeEEE-e-e--------CCCcEEEEEEecCccccccccccccCCCceeEEEeeCCCCCCccEEEE
Q 022111          161 MAPGALVGLGLLDPVQKLAS-C-G--------CDNTVKVWKMYNGIWKMDCFPALQMHSDWVRSVAWAPNLGLPKSTIAS  230 (302)
Q Consensus       161 ~~~~~~~~~~~~~~~~~l~s-~-~--------~D~~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~l~s  230 (302)
                                    ++++.. . +        ..+.|-++|..+.+    .+..+. -...+..|+++||++  +..+++
T Consensus       259 --------------g~~lyV~~~~~~~~thk~~~~~V~ViD~~t~k----vi~~i~-vG~~~~~iavS~Dgk--p~lyvt  317 (352)
T TIGR02658       259 --------------RDRIYLLADQRAKWTHKTASRFLFVVDAKTGK----RLRKIE-LGHEIDSINVSQDAK--PLLYAL  317 (352)
T ss_pred             --------------CCEEEEEecCCccccccCCCCEEEEEECCCCe----EEEEEe-CCCceeeEEECCCCC--eEEEEe
Confidence                          344443 2 1        22579999987753    222221 133588999999972  133444


Q ss_pred             EecCCeEEEEEeccC
Q 022111          231 ASQDGTVVIWTCAKE  245 (302)
Q Consensus       231 ~s~D~~i~iwd~~~~  245 (302)
                      ...++.|.+.|..+.
T Consensus       318 n~~s~~VsViD~~t~  332 (352)
T TIGR02658       318 STGDKTLYIFDAETG  332 (352)
T ss_pred             CCCCCcEEEEECcCC
Confidence            446888999998754

This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.

>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region

Probab=97.02  E-value=0.067  Score=38.39  Aligned_cols=105  Identities=22%  Similarity=0.221  Sum_probs=65.1

Q ss_pred             eeEEEecC-CC-CCcEEEEEecCCcEEEEEecCCCCeeeeeecccCCCCeEEEEeCCCCCCCceeecccCCCceeEEEee
Q 022111          105 VNSIAWAP-HE-LGLSLACGSSDGNISVFTATADGGWDTTRIDQAHPVGVTSVSWAPAMAPGALVGLGLLDPVQKLASCG  182 (302)
Q Consensus       105 i~~l~~~p-d~-~~~~l~sg~~d~~v~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~  182 (302)
                      |++++++. +. ....|+.|+.|..|++|+-..    ...++.  -...++++.-..               ..+|+.+-
T Consensus         2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~~e----~~~Ei~--e~~~v~~L~~~~---------------~~~F~Y~l   60 (111)
T PF14783_consen    2 VTALCLFDFDGDGENELLVGSDDFEIRVFKGDE----IVAEIT--ETDKVTSLCSLG---------------GGRFAYAL   60 (111)
T ss_pred             eeEEEEEecCCCCcceEEEecCCcEEEEEeCCc----EEEEEe--cccceEEEEEcC---------------CCEEEEEe
Confidence            56666653 11 125799999999999997542    223332  234566665432               25789999


Q ss_pred             CCCcEEEEEEecCccccccccccccCCCceeEEEeeC-CCCCCccEEEEEecCCeEE
Q 022111          183 CDNTVKVWKMYNGIWKMDCFPALQMHSDWVRSVAWAP-NLGLPKSTIASASQDGTVV  238 (302)
Q Consensus       183 ~D~~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~~~p-~~~~~~~~l~s~s~D~~i~  238 (302)
                      ..|+|-+|+-....|..+.       +..+.++++.. ++.. ...|++|=.+|.|-
T Consensus        61 ~NGTVGvY~~~~RlWRiKS-------K~~~~~~~~~D~~gdG-~~eLI~GwsnGkve  109 (111)
T PF14783_consen   61 ANGTVGVYDRSQRLWRIKS-------KNQVTSMAFYDINGDG-VPELIVGWSNGKVE  109 (111)
T ss_pred             cCCEEEEEeCcceeeeecc-------CCCeEEEEEEcCCCCC-ceEEEEEecCCeEE
Confidence            9999999998777666542       33367766643 3211 24578887777653

>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function

Probab=96.95  E-value=0.21  Score=42.81  Aligned_cols=193  Identities=13%  Similarity=0.210  Sum_probs=99.4

Q ss_pred             EEeeCCCCCCEEEEEe-----CCCeEEEEEcCCCCceeEEEEecCCCCCeeEEEecCCCCCcEEEEE--e----------
Q 022111           61 VAWAHPKFGSILASCS-----YDGQVIIWKEGNQNDWTQAHTFNDHKSSVNSIAWAPHELGLSLACG--S----------  123 (302)
Q Consensus        61 v~~~~~~~~~~l~s~s-----~D~~i~iwd~~~~~~~~~~~~~~~h~~~i~~l~~~pd~~~~~l~sg--~----------  123 (302)
                      -.|+++  |++|++.-     ..|.|-+||....  ...+..+..|---.=.+.+.||  |..|+.+  +          
T Consensus        56 g~fs~d--G~~LytTEnd~~~g~G~IgVyd~~~~--~~ri~E~~s~GIGPHel~l~pD--G~tLvVANGGI~Thpd~GR~  129 (305)
T PF07433_consen   56 GVFSPD--GRLLYTTENDYETGRGVIGVYDAARG--YRRIGEFPSHGIGPHELLLMPD--GETLVVANGGIETHPDSGRA  129 (305)
T ss_pred             EEEcCC--CCEEEEeccccCCCcEEEEEEECcCC--cEEEeEecCCCcChhhEEEcCC--CCEEEEEcCCCccCcccCce
Confidence            467764  88888763     3678999998732  3455566555433345667887  4344443  2          


Q ss_pred             ------cCCcEEEEEecCCCCeeeeeec-ccCCCCeEEEEeCCCCCCCceeecccC----CCceeEEEeeCCCcEEEEEE
Q 022111          124 ------SDGNISVFTATADGGWDTTRID-QAHPVGVTSVSWAPAMAPGALVGLGLL----DPVQKLASCGCDNTVKVWKM  192 (302)
Q Consensus       124 ------~d~~v~~~~~~~~~~~~~~~~~-~~h~~~v~~~~~~~~~~~~~~~~~~~~----~~~~~l~s~~~D~~v~iwd~  192 (302)
                            ++-++.+-|..++.-.....+. .-|...+..+++.+++.  .+.+....    +.--+++.-..++.++..++
T Consensus       130 kLNl~tM~psL~~ld~~sG~ll~q~~Lp~~~~~lSiRHLa~~~~G~--V~~a~Q~qg~~~~~~PLva~~~~g~~~~~~~~  207 (305)
T PF07433_consen  130 KLNLDTMQPSLVYLDARSGALLEQVELPPDLHQLSIRHLAVDGDGT--VAFAMQYQGDPGDAPPLVALHRRGGALRLLPA  207 (305)
T ss_pred             ecChhhcCCceEEEecCCCceeeeeecCccccccceeeEEecCCCc--EEEEEecCCCCCccCCeEEEEcCCCcceeccC
Confidence                  1122222222222111212221 12445677788776531  11111110    00123444444444555444


Q ss_pred             ecCccccccccccccCCCceeEEEeeCCCCCCccEEEEEe-cCCeEEEEEeccCCcceeeeeeccC-CCcEEEEEEccCC
Q 022111          193 YNGIWKMDCFPALQMHSDWVRSVAWAPNLGLPKSTIASAS-QDGTVVIWTCAKEGEQWEGRVLKDF-KTPVWSVSWSLTG  270 (302)
Q Consensus       193 ~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~l~s~s-~D~~i~iwd~~~~~~~~~~~~~~~~-~~~v~~~~~spdg  270 (302)
                      ....        ...-.++|-+|++++++    ..++..| ..+.+.+||..+.      .++... -..+..++-.+++
T Consensus       208 p~~~--------~~~l~~Y~gSIa~~~~g----~~ia~tsPrGg~~~~~d~~tg------~~~~~~~l~D~cGva~~~~~  269 (305)
T PF07433_consen  208 PEEQ--------WRRLNGYIGSIAADRDG----RLIAVTSPRGGRVAVWDAATG------RLLGSVPLPDACGVAPTDDG  269 (305)
T ss_pred             ChHH--------HHhhCCceEEEEEeCCC----CEEEEECCCCCEEEEEECCCC------CEeeccccCceeeeeecCCc
Confidence            3321        12345779999999985    5565555 5778999998753      222222 1246777776666


Q ss_pred             CEEEEecCCc
Q 022111          271 NLLAVADANN  280 (302)
Q Consensus       271 ~~la~~~~d~  280 (302)
                       ++++.+...
T Consensus       270 -f~~ssG~G~  278 (305)
T PF07433_consen  270 -FLVSSGQGQ  278 (305)
T ss_pred             -eEEeCCCcc
Confidence             555554434

>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A

Probab=96.87  E-value=0.2  Score=41.32  Aligned_cols=187  Identities=18%  Similarity=0.206  Sum_probs=92.7

Q ss_pred             CCEEEEEeCCCeEEEEEcCCCCceeEEEEecCCCCCeeEEEecCCCCCcEEEEEecCCcEEEEEecCCCCeeeeee-ccc
Q 022111           69 GSILASCSYDGQVIIWKEGNQNDWTQAHTFNDHKSSVNSIAWAPHELGLSLACGSSDGNISVFTATADGGWDTTRI-DQA  147 (302)
Q Consensus        69 ~~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~h~~~i~~l~~~pd~~~~~l~sg~~d~~v~~~~~~~~~~~~~~~~-~~~  147 (302)
                      +.++++++.++.+..||..++.   .+..+.. ..++...... +  +..++.++.++.++.+|..++..  .... ...
T Consensus        36 ~~~v~~~~~~~~l~~~d~~tG~---~~W~~~~-~~~~~~~~~~-~--~~~v~v~~~~~~l~~~d~~tG~~--~W~~~~~~  106 (238)
T PF13360_consen   36 GGRVYVASGDGNLYALDAKTGK---VLWRFDL-PGPISGAPVV-D--GGRVYVGTSDGSLYALDAKTGKV--LWSIYLTS  106 (238)
T ss_dssp             TTEEEEEETTSEEEEEETTTSE---EEEEEEC-SSCGGSGEEE-E--TTEEEEEETTSEEEEEETTTSCE--EEEEEE-S
T ss_pred             CCEEEEEcCCCEEEEEECCCCC---EEEEeec-cccccceeee-c--ccccccccceeeeEecccCCcce--eeeecccc
Confidence            4567777899999999987763   3333332 2221111111 1  23566677888888888654332  1221 101


Q ss_pred             -CCCC-eEEEEeCCCCCCCceeecccCCCceeEEEeeCCCcEEEEEEecCcccccccccccc-C-CCc------e-eEEE
Q 022111          148 -HPVG-VTSVSWAPAMAPGALVGLGLLDPVQKLASCGCDNTVKVWKMYNGIWKMDCFPALQM-H-SDW------V-RSVA  216 (302)
Q Consensus       148 -h~~~-v~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~D~~v~iwd~~~~~~~~~~~~~~~~-h-~~~------v-~~v~  216 (302)
                       .... ........              .+..++.+..++.|..+|++++......  .... . ...      + ..+.
T Consensus       107 ~~~~~~~~~~~~~~--------------~~~~~~~~~~~g~l~~~d~~tG~~~w~~--~~~~~~~~~~~~~~~~~~~~~~  170 (238)
T PF13360_consen  107 SPPAGVRSSSSPAV--------------DGDRLYVGTSSGKLVALDPKTGKLLWKY--PVGEPRGSSPISSFSDINGSPV  170 (238)
T ss_dssp             SCTCSTB--SEEEE--------------ETTEEEEEETCSEEEEEETTTTEEEEEE--ESSTT-SS--EEEETTEEEEEE
T ss_pred             ccccccccccCceE--------------ecCEEEEEeccCcEEEEecCCCcEEEEe--ecCCCCCCcceeeecccccceE
Confidence             0000 00000000              1356777777899999998877421111  1110 0 010      1 1222


Q ss_pred             eeCCCCCCccEEEEEecCCe-EEEEEeccCCcceeeeeeccCCCcEEEEEEccCCCEEEEecCC-ceEEeeecCCce-EE
Q 022111          217 WAPNLGLPKSTIASASQDGT-VVIWTCAKEGEQWEGRVLKDFKTPVWSVSWSLTGNLLAVADAN-NVTLWKEAVDGE-WQ  293 (302)
Q Consensus       217 ~~p~~~~~~~~l~s~s~D~~-i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~la~~~~d-~i~~w~~~~~~~-~~  293 (302)
                      +. +     ..+..++.++. +.+ |+.+....|..    .. ..+..+ ..+++..|.+++++ .+..||...... |+
T Consensus       171 ~~-~-----~~v~~~~~~g~~~~~-d~~tg~~~w~~----~~-~~~~~~-~~~~~~~l~~~~~~~~l~~~d~~tG~~~W~  237 (238)
T PF13360_consen  171 IS-D-----GRVYVSSGDGRVVAV-DLATGEKLWSK----PI-SGIYSL-PSVDGGTLYVTSSDGRLYALDLKTGKVVWQ  237 (238)
T ss_dssp             CC-T-----TEEEEECCTSSEEEE-ETTTTEEEEEE----CS-S-ECEC-EECCCTEEEEEETTTEEEEEETTTTEEEEE
T ss_pred             EE-C-----CEEEEEcCCCeEEEE-ECCCCCEEEEe----cC-CCccCC-ceeeCCEEEEEeCCCEEEEEECCCCCEEeE
Confidence            22 1     25666666664 555 87765333321    11 122221 34667777777655 799999765433 64

...

>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=96.86  E-value=0.0094  Score=54.71  Aligned_cols=94  Identities=20%  Similarity=0.388  Sum_probs=71.2

Q ss_pred             cCeEEEEeeCCCCCCEEEEEeCCCeEEEEEcCCCCceeEEEEecCCCCCee-EEEecCCCCCcEEEEEecCCcEEEEEec
Q 022111           56 GPVWQVAWAHPKFGSILASCSYDGQVIIWKEGNQNDWTQAHTFNDHKSSVN-SIAWAPHELGLSLACGSSDGNISVFTAT  134 (302)
Q Consensus        56 ~~v~~v~~~~~~~~~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~h~~~i~-~l~~~pd~~~~~l~sg~~d~~v~~~~~~  134 (302)
                      -.|..+.|+|.  =.++|.+..+|.+.+..++    |..+.++..|+..++ +++|.||  |+.||.|-.||+|++-|+.
T Consensus        21 ~~i~~~ewnP~--~dLiA~~t~~gelli~R~n----~qRlwtip~p~~~v~~sL~W~~D--GkllaVg~kdG~I~L~Dve   92 (665)
T KOG4640|consen   21 INIKRIEWNPK--MDLIATRTEKGELLIHRLN----WQRLWTIPIPGENVTASLCWRPD--GKLLAVGFKDGTIRLHDVE   92 (665)
T ss_pred             cceEEEEEcCc--cchhheeccCCcEEEEEec----cceeEeccCCCCccceeeeecCC--CCEEEEEecCCeEEEEEcc
Confidence            35677889764  3689999999999998765    345677777777777 9999999  8899999999999999998


Q ss_pred             CCCCeeeeeecccCCCCeEEEEeCC
Q 022111          135 ADGGWDTTRIDQAHPVGVTSVSWAP  159 (302)
Q Consensus       135 ~~~~~~~~~~~~~h~~~v~~~~~~~  159 (302)
                      ++......  .......|+++-|+|
T Consensus        93 ~~~~l~~~--~~s~e~~is~~~w~~  115 (665)
T KOG4640|consen   93 KGGRLVSF--LFSVETDISKGIWDR  115 (665)
T ss_pred             CCCceecc--ccccccchheeeccc
Confidence            76433211  113345677888865

>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins

Probab=96.76  E-value=0.11  Score=50.30  Aligned_cols=101  Identities=13%  Similarity=0.074  Sum_probs=68.9

Q ss_pred             eEEEeeCCCcEEEEEEecCcccc-c-cccccccCCCceeEEEeeCCCCCCccEEEEEecCCeEEEEEeccCCcceeeeee
Q 022111          177 KLASCGCDNTVKVWKMYNGIWKM-D-CFPALQMHSDWVRSVAWAPNLGLPKSTIASASQDGTVVIWTCAKEGEQWEGRVL  254 (302)
Q Consensus       177 ~l~s~~~D~~v~iwd~~~~~~~~-~-~~~~~~~h~~~v~~v~~~p~~~~~~~~l~s~s~D~~i~iwd~~~~~~~~~~~~~  254 (302)
                      .-+.|-.++.+..||++-...++ . ....+ .....-.|++-+.+     .+||.||.+|.||+||--..   .....+
T Consensus       544 ~tflGls~n~lfriDpR~~~~k~v~~~~k~Y-~~~~~Fs~~aTt~~-----G~iavgs~~G~IRLyd~~g~---~AKT~l  614 (794)
T PF08553_consen  544 QTFLGLSDNSLFRIDPRLSGNKLVDSQSKQY-SSKNNFSCFATTED-----GYIAVGSNKGDIRLYDRLGK---RAKTAL  614 (794)
T ss_pred             ceEEEECCCceEEeccCCCCCceeecccccc-ccCCCceEEEecCC-----ceEEEEeCCCcEEeecccch---hhhhcC
Confidence            45667778889999987532111 0 00011 12333556666655     47999999999999984321   112344


Q ss_pred             ccCCCcEEEEEEccCCCEEEEecCCceEEeee
Q 022111          255 KDFKTPVWSVSWSLTGNLLAVADANNVTLWKE  286 (302)
Q Consensus       255 ~~~~~~v~~~~~spdg~~la~~~~d~i~~w~~  286 (302)
                      .+.+.||..|.-+.||++|++.+..-|.|.+.
T Consensus       615 p~lG~pI~~iDvt~DGkwilaTc~tyLlLi~t  646 (794)
T PF08553_consen  615 PGLGDPIIGIDVTADGKWILATCKTYLLLIDT  646 (794)
T ss_pred             CCCCCCeeEEEecCCCcEEEEeecceEEEEEE
Confidence            67789999999999999999998777888875

Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].

>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins

Probab=96.71  E-value=0.31  Score=47.37  Aligned_cols=136  Identities=12%  Similarity=0.145  Sum_probs=79.0

Q ss_pred             eCCCcEEEEeecCCCceEEEEecCcccC-eEEEEeeCCC-----CCCEEEEEeCCCeEEEEEcCCCCceeEE----EEec
Q 022111           30 SSDSSIKIIGLSNSASQHLATLKGHRGP-VWQVAWAHPK-----FGSILASCSYDGQVIIWKEGNQNDWTQA----HTFN   99 (302)
Q Consensus        30 ~~d~~v~lw~~~~~~~~~~~~~~~h~~~-v~~v~~~~~~-----~~~~l~s~s~D~~i~iwd~~~~~~~~~~----~~~~   99 (302)
                      .....++-.|++.  ++.+....-|... |..++  |..     .+...+.|-.+..+..||++-... +.+    +.+.
T Consensus       501 ~~~~~ly~mDLe~--GKVV~eW~~~~~~~v~~~~--p~~K~aqlt~e~tflGls~n~lfriDpR~~~~-k~v~~~~k~Y~  575 (794)
T PF08553_consen  501 NNPNKLYKMDLER--GKVVEEWKVHDDIPVVDIA--PDSKFAQLTNEQTFLGLSDNSLFRIDPRLSGN-KLVDSQSKQYS  575 (794)
T ss_pred             CCCCceEEEecCC--CcEEEEeecCCCcceeEec--ccccccccCCCceEEEECCCceEEeccCCCCC-ceeeccccccc
Confidence            3446666667755  4566666655544 65554  321     133456777888999999875421 122    2222


Q ss_pred             CCCCCeeEEEecCCCCCcEEEEEecCCcEEEEEecCCCCeeeeeecccCCCCeEEEEeCCCCCCCceeecccCCCceeEE
Q 022111          100 DHKSSVNSIAWAPHELGLSLACGSSDGNISVFTATADGGWDTTRIDQAHPVGVTSVSWAPAMAPGALVGLGLLDPVQKLA  179 (302)
Q Consensus       100 ~h~~~i~~l~~~pd~~~~~l~sg~~d~~v~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~  179 (302)
                       .+....|++-..+  | .||.|+.+|.|||||-. + ......+. +-..+|.++.-+.+              |+.|+
T Consensus       576 -~~~~Fs~~aTt~~--G-~iavgs~~G~IRLyd~~-g-~~AKT~lp-~lG~pI~~iDvt~D--------------Gkwil  634 (794)
T PF08553_consen  576 -SKNNFSCFATTED--G-YIAVGSNKGDIRLYDRL-G-KRAKTALP-GLGDPIIGIDVTAD--------------GKWIL  634 (794)
T ss_pred             -cCCCceEEEecCC--c-eEEEEeCCCcEEeeccc-c-hhhhhcCC-CCCCCeeEEEecCC--------------CcEEE
Confidence             3345667766544  5 69999999999999842 1 11112222 33456777765544              44433


Q ss_pred             EeeCCCcEEEEEE
Q 022111          180 SCGCDNTVKVWKM  192 (302)
Q Consensus       180 s~~~D~~v~iwd~  192 (302)
                       +.++.++-|++.
T Consensus       635 -aTc~tyLlLi~t  646 (794)
T PF08553_consen  635 -ATCKTYLLLIDT  646 (794)
T ss_pred             -EeecceEEEEEE
Confidence             334678888886

Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].

>PHA02713 hypothetical protein; Provisional

Probab=96.61  E-value=0.16  Score=47.91  Aligned_cols=63  Identities=3%  Similarity=0.066  Sum_probs=35.9

Q ss_pred             ceeEEEeeCC------CcEEEEEEec-CccccccccccccCCCceeEEEeeCCCCCCccEEEEEecCC--eEEEEEeccC
Q 022111          175 VQKLASCGCD------NTVKVWKMYN-GIWKMDCFPALQMHSDWVRSVAWAPNLGLPKSTIASASQDG--TVVIWTCAKE  245 (302)
Q Consensus       175 ~~~l~s~~~D------~~v~iwd~~~-~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~l~s~s~D~--~i~iwd~~~~  245 (302)
                      ++..+.||.+      ..+..||..+ ..|...  ..+.........+.+      ++...+.|+.|+  ++..||..+.
T Consensus       464 ~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~--~~m~~~r~~~~~~~~------~~~iyv~Gg~~~~~~~e~yd~~~~  535 (557)
T PHA02713        464 DDIYVVCDIKDEKNVKTCIFRYNTNTYNGWELI--TTTESRLSALHTILH------DNTIMMLHCYESYMLQDTFNVYTY  535 (557)
T ss_pred             CEEEEEeCCCCCCccceeEEEecCCCCCCeeEc--cccCcccccceeEEE------CCEEEEEeeecceeehhhcCcccc
Confidence            4566767654      2467899887 677532  222212222222322      147788888888  6777776653

>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]

Probab=96.56  E-value=0.0053  Score=58.24  Aligned_cols=75  Identities=25%  Similarity=0.448  Sum_probs=58.5

Q ss_pred             eeEEEeeCCCCCCccEEEEEecCCeEEEEEeccCCcceeeeeeccCCCcEEEEEEccCCCEEEEecCC-ceEEeeecCCc
Q 022111          212 VRSVAWAPNLGLPKSTIASASQDGTVVIWTCAKEGEQWEGRVLKDFKTPVWSVSWSLTGNLLAVADAN-NVTLWKEAVDG  290 (302)
Q Consensus       212 v~~v~~~p~~~~~~~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~la~~~~d-~i~~w~~~~~~  290 (302)
                      +.+++|+|..    -.|+.|=+-|.+.+|+.....   ...+...|..+|..+.|||+|..+.+++.- .+.+|....-|
T Consensus        62 atSLCWHpe~----~vLa~gwe~g~~~v~~~~~~e---~htv~~th~a~i~~l~wS~~G~~l~t~d~~g~v~lwr~d~~g  134 (1416)
T KOG3617|consen   62 ATSLCWHPEE----FVLAQGWEMGVSDVQKTNTTE---THTVVETHPAPIQGLDWSHDGTVLMTLDNPGSVHLWRYDVIG  134 (1416)
T ss_pred             hhhhccChHH----HHHhhccccceeEEEecCCce---eeeeccCCCCCceeEEecCCCCeEEEcCCCceeEEEEeeecc
Confidence            5789999973    568888889999999876432   234556788999999999999999999766 59999976445


Q ss_pred             eEE
Q 022111          291 EWQ  293 (302)
Q Consensus       291 ~~~  293 (302)
                      +.+
T Consensus       135 ~~q  137 (1416)
T KOG3617|consen  135 EIQ  137 (1416)
T ss_pred             ccc
Confidence            543

>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=96.55  E-value=0.017  Score=53.14  Aligned_cols=74  Identities=19%  Similarity=0.413  Sum_probs=56.0

Q ss_pred             CCCeEEEEeCCCCCCCceeecccCCCceeEEEeeCCCcEEEEEEecCccccccccccccCCCcee-EEEeeCCCCCCccE
Q 022111          149 PVGVTSVSWAPAMAPGALVGLGLLDPVQKLASCGCDNTVKVWKMYNGIWKMDCFPALQMHSDWVR-SVAWAPNLGLPKST  227 (302)
Q Consensus       149 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~D~~v~iwd~~~~~~~~~~~~~~~~h~~~v~-~v~~~p~~~~~~~~  227 (302)
                      +..+..+.|+|.+              ..||.+.++|.|-+..+.-.     .+-++.-|...++ +++|.|||    +.
T Consensus        20 ~~~i~~~ewnP~~--------------dLiA~~t~~gelli~R~n~q-----Rlwtip~p~~~v~~sL~W~~DG----kl   76 (665)
T KOG4640|consen   20 PINIKRIEWNPKM--------------DLIATRTEKGELLIHRLNWQ-----RLWTIPIPGENVTASLCWRPDG----KL   76 (665)
T ss_pred             ccceEEEEEcCcc--------------chhheeccCCcEEEEEeccc-----eeEeccCCCCccceeeeecCCC----CE
Confidence            4457889999976              68899999998888777521     1223333444455 99999996    78


Q ss_pred             EEEEecCCeEEEEEeccC
Q 022111          228 IASASQDGTVVIWTCAKE  245 (302)
Q Consensus       228 l~s~s~D~~i~iwd~~~~  245 (302)
                      ||.|=.||+|++-|+.+.
T Consensus        77 laVg~kdG~I~L~Dve~~   94 (665)
T KOG4640|consen   77 LAVGFKDGTIRLHDVEKG   94 (665)
T ss_pred             EEEEecCCeEEEEEccCC
Confidence            999999999999998764

>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function

Probab=96.53  E-value=0.44  Score=40.86  Aligned_cols=210  Identities=17%  Similarity=0.148  Sum_probs=101.3

Q ss_pred             CCEEEEEeCCCe-EEEEEcCCCCceeEEEEecCCC--CCeeEEEecCCCCCcEEEEEe-----cCCcEEEEEecCCCCee
Q 022111           69 GSILASCSYDGQ-VIIWKEGNQNDWTQAHTFNDHK--SSVNSIAWAPHELGLSLACGS-----SDGNISVFTATADGGWD  140 (302)
Q Consensus        69 ~~~l~s~s~D~~-i~iwd~~~~~~~~~~~~~~~h~--~~i~~l~~~pd~~~~~l~sg~-----~d~~v~~~~~~~~~~~~  140 (302)
                      +..++.+-.-|+ +.+||..++..   .+.+....  ...---.|+||  |.+|.+.=     ..|.|-+||.... ...
T Consensus        17 ~~avafaRRPG~~~~v~D~~~g~~---~~~~~a~~gRHFyGHg~fs~d--G~~LytTEnd~~~g~G~IgVyd~~~~-~~r   90 (305)
T PF07433_consen   17 PEAVAFARRPGTFALVFDCRTGQL---LQRLWAPPGRHFYGHGVFSPD--GRLLYTTENDYETGRGVIGVYDAARG-YRR   90 (305)
T ss_pred             CeEEEEEeCCCcEEEEEEcCCCce---eeEEcCCCCCEEecCEEEcCC--CCEEEEeccccCCCcEEEEEEECcCC-cEE
Confidence            455555555444 55677766532   22221111  11123468998  66777653     3478999998722 222


Q ss_pred             eeeecccCCCCeEEEEeCCCCCCCceeec---ccCCCc--eeEEEeeCCCcEEEEEEecCcccccccccc--ccCCCcee
Q 022111          141 TTRIDQAHPVGVTSVSWAPAMAPGALVGL---GLLDPV--QKLASCGCDNTVKVWKMYNGIWKMDCFPAL--QMHSDWVR  213 (302)
Q Consensus       141 ~~~~~~~h~~~v~~~~~~~~~~~~~~~~~---~~~~~~--~~l~s~~~D~~v~iwd~~~~~~~~~~~~~~--~~h~~~v~  213 (302)
                      +-++. .|...--.+.+.|++.. -+++.   ...++.  ..|=-...+..+-+.|..++...  ....+  .-|.-.|+
T Consensus        91 i~E~~-s~GIGPHel~l~pDG~t-LvVANGGI~Thpd~GR~kLNl~tM~psL~~ld~~sG~ll--~q~~Lp~~~~~lSiR  166 (305)
T PF07433_consen   91 IGEFP-SHGIGPHELLLMPDGET-LVVANGGIETHPDSGRAKLNLDTMQPSLVYLDARSGALL--EQVELPPDLHQLSIR  166 (305)
T ss_pred             EeEec-CCCcChhhEEEcCCCCE-EEEEcCCCccCcccCceecChhhcCCceEEEecCCCcee--eeeecCcccccccee
Confidence            23332 33333334556665411 11111   011111  12222333445555555555211  01123  34667788


Q ss_pred             EEEeeCCCCCCccEEEEEecC-C-------eEEEEEeccCCccee--eeeeccCCCcEEEEEEccCCCEEEEecCC--ce
Q 022111          214 SVAWAPNLGLPKSTIASASQD-G-------TVVIWTCAKEGEQWE--GRVLKDFKTPVWSVSWSLTGNLLAVADAN--NV  281 (302)
Q Consensus       214 ~v~~~p~~~~~~~~l~s~s~D-~-------~i~iwd~~~~~~~~~--~~~~~~~~~~v~~~~~spdg~~la~~~~d--~i  281 (302)
                      -+++.+++     .++.+.+. +       -+-+++....-....  ......+..-+-||+++++|.++++.+..  .+
T Consensus       167 HLa~~~~G-----~V~~a~Q~qg~~~~~~PLva~~~~g~~~~~~~~p~~~~~~l~~Y~gSIa~~~~g~~ia~tsPrGg~~  241 (305)
T PF07433_consen  167 HLAVDGDG-----TVAFAMQYQGDPGDAPPLVALHRRGGALRLLPAPEEQWRRLNGYIGSIAADRDGRLIAVTSPRGGRV  241 (305)
T ss_pred             eEEecCCC-----cEEEEEecCCCCCccCCeEEEEcCCCcceeccCChHHHHhhCCceEEEEEeCCCCEEEEECCCCCEE
Confidence            88888875     23333221 1       122222111000000  00012344668999999999999888776  59


Q ss_pred             EEeeecCCceEEE
Q 022111          282 TLWKEAVDGEWQQ  294 (302)
Q Consensus       282 ~~w~~~~~~~~~~  294 (302)
                      .+||.+ .|++..
T Consensus       242 ~~~d~~-tg~~~~  253 (305)
T PF07433_consen  242 AVWDAA-TGRLLG  253 (305)
T ss_pred             EEEECC-CCCEee
Confidence            999865 455543

>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=96.52  E-value=0.28  Score=44.76  Aligned_cols=142  Identities=16%  Similarity=0.280  Sum_probs=71.6

Q ss_pred             CCCCeeEEEecCCCCCcEEEEEecCCcEEEEEecCCCCeeeeeecccCCCCeEEEEeCCCCCCCceeecccCCCceeEEE
Q 022111          101 HKSSVNSIAWAPHELGLSLACGSSDGNISVFTATADGGWDTTRIDQAHPVGVTSVSWAPAMAPGALVGLGLLDPVQKLAS  180 (302)
Q Consensus       101 h~~~i~~l~~~pd~~~~~l~sg~~d~~v~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~s  180 (302)
                      ....+..+.++|+  +..++. ..|+...+|...   .+....     ........|.+.               ..+|.
T Consensus        31 ~~~~p~~ls~npn--gr~v~V-~g~geY~iyt~~---~~r~k~-----~G~g~~~vw~~~---------------n~yAv   84 (443)
T PF04053_consen   31 CEIYPQSLSHNPN--GRFVLV-CGDGEYEIYTAL---AWRNKA-----FGSGLSFVWSSR---------------NRYAV   84 (443)
T ss_dssp             -SS--SEEEE-TT--SSEEEE-EETTEEEEEETT---TTEEEE-----EEE-SEEEE-TS---------------SEEEE
T ss_pred             CCcCCeeEEECCC--CCEEEE-EcCCEEEEEEcc---CCcccc-----cCceeEEEEecC---------------ccEEE
Confidence            4556789999997  556666 557777787622   122111     122355778763               35677


Q ss_pred             eeCCCcEEEEEEecCccccccccccccCCCceeEEEeeCCCCCCccEEEEEecCCeEEEEEeccCCcceeeeeeccCCC-
Q 022111          181 CGCDNTVKVWKMYNGIWKMDCFPALQMHSDWVRSVAWAPNLGLPKSTIASASQDGTVVIWTCAKEGEQWEGRVLKDFKT-  259 (302)
Q Consensus       181 ~~~D~~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~~~~-  259 (302)
                      -...+.|+|+.-.+...    ...+. -...+..|-.   |    ..|+.. .++.|.+||+.+..      +...... 
T Consensus        85 ~~~~~~I~I~kn~~~~~----~k~i~-~~~~~~~If~---G----~LL~~~-~~~~i~~yDw~~~~------~i~~i~v~  145 (443)
T PF04053_consen   85 LESSSTIKIYKNFKNEV----VKSIK-LPFSVEKIFG---G----NLLGVK-SSDFICFYDWETGK------LIRRIDVS  145 (443)
T ss_dssp             E-TTS-EEEEETTEE-T----T------SS-EEEEE----S----SSEEEE-ETTEEEEE-TTT--------EEEEESS-
T ss_pred             EECCCeEEEEEcCcccc----ceEEc-CCcccceEEc---C----cEEEEE-CCCCEEEEEhhHcc------eeeEEecC
Confidence            76688899973211110    00111 0112334322   2    334444 44489999997542      2222222 


Q ss_pred             cEEEEEEccCCCEEEEecCCceEEeeec
Q 022111          260 PVWSVSWSLTGNLLAVADANNVTLWKEA  287 (302)
Q Consensus       260 ~v~~~~~spdg~~la~~~~d~i~~w~~~  287 (302)
                      +|..+-||++|+++|..+.+++.+.+..
T Consensus       146 ~vk~V~Ws~~g~~val~t~~~i~il~~~  173 (443)
T PF04053_consen  146 AVKYVIWSDDGELVALVTKDSIYILKYN  173 (443)
T ss_dssp             E-EEEEE-TTSSEEEEE-S-SEEEEEE-
T ss_pred             CCcEEEEECCCCEEEEEeCCeEEEEEec
Confidence            3789999999999999998888887753

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.

>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]

Probab=96.50  E-value=0.79  Score=43.43  Aligned_cols=232  Identities=18%  Similarity=0.261  Sum_probs=118.9

Q ss_pred             CCCEEEEeeCCC------cEEEEeecCCCceEEEEecCcccCeEEEEeeCCCCCCEEEEEeCC------CeEEEEEcCCC
Q 022111           22 YGKRLATASSDS------SIKIIGLSNSASQHLATLKGHRGPVWQVAWAHPKFGSILASCSYD------GQVIIWKEGNQ   89 (302)
Q Consensus        22 ~~~~l~s~~~d~------~v~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~s~D------~~i~iwd~~~~   89 (302)
                      .+..++.||.++      .+..||...+....+..+.. ...-.++++..   +.+.++|+.|      .++-.||....
T Consensus       284 ~~~l~~vGG~~~~~~~~~~ve~yd~~~~~w~~~a~m~~-~r~~~~~~~~~---~~lYv~GG~~~~~~~l~~ve~YD~~~~  359 (571)
T KOG4441|consen  284 SGKLVAVGGYNRQGQSLRSVECYDPKTNEWSSLAPMPS-PRCRVGVAVLN---GKLYVVGGYDSGSDRLSSVERYDPRTN  359 (571)
T ss_pred             CCeEEEECCCCCCCcccceeEEecCCcCcEeecCCCCc-ccccccEEEEC---CEEEEEccccCCCcccceEEEecCCCC
Confidence            356777888774      57788876554444444432 22233455532   6788999998      34566777654


Q ss_pred             CceeEEEEecCCCCCeeEEEecCCCCCcEEEEEecCCc-----EEEEEecCCCCeeeee-ecccCCCCeEEEEeCCCCCC
Q 022111           90 NDWTQAHTFNDHKSSVNSIAWAPHELGLSLACGSSDGN-----ISVFTATADGGWDTTR-IDQAHPVGVTSVSWAPAMAP  163 (302)
Q Consensus        90 ~~~~~~~~~~~h~~~i~~l~~~pd~~~~~l~sg~~d~~-----v~~~~~~~~~~~~~~~-~~~~h~~~v~~~~~~~~~~~  163 (302)
                       .|..+..............+  +  |.+.|.|+.|+.     +..||..+ ..|.... .. ..........+      
T Consensus       360 -~W~~~a~M~~~R~~~~v~~l--~--g~iYavGG~dg~~~l~svE~YDp~~-~~W~~va~m~-~~r~~~gv~~~------  426 (571)
T KOG4441|consen  360 -QWTPVAPMNTKRSDFGVAVL--D--GKLYAVGGFDGEKSLNSVECYDPVT-NKWTPVAPML-TRRSGHGVAVL------  426 (571)
T ss_pred             -ceeccCCccCccccceeEEE--C--CEEEEEeccccccccccEEEecCCC-CcccccCCCC-cceeeeEEEEE------
Confidence             46654433322222222222  2  668888888864     44555442 2343211 00 00001111111      


Q ss_pred             CceeecccCCCceeEEEeeCCC------cEEEEEEecCcccccc-ccc-cccCCCceeEEEeeCCCCCCccEEEEEecCC
Q 022111          164 GALVGLGLLDPVQKLASCGCDN------TVKVWKMYNGIWKMDC-FPA-LQMHSDWVRSVAWAPNLGLPKSTIASASQDG  235 (302)
Q Consensus       164 ~~~~~~~~~~~~~~l~s~~~D~------~v~iwd~~~~~~~~~~-~~~-~~~h~~~v~~v~~~p~~~~~~~~l~s~s~D~  235 (302)
                                ++...+.||.|+      .+..||..++.|.... ..+ ..+|.    ...+      ++...+.|+.|+
T Consensus       427 ----------~g~iYi~GG~~~~~~~l~sve~YDP~t~~W~~~~~M~~~R~~~g----~a~~------~~~iYvvGG~~~  486 (571)
T KOG4441|consen  427 ----------GGKLYIIGGGDGSSNCLNSVECYDPETNTWTLIAPMNTRRSGFG----VAVL------NGKIYVVGGFDG  486 (571)
T ss_pred             ----------CCEEEEEcCcCCCccccceEEEEcCCCCceeecCCcccccccce----EEEE------CCEEEEECCccC
Confidence                      256778887554      5677888888775321 111 11221    1111      136677787776


Q ss_pred             -----eEEEEEeccCCcceeeeeeccCC---CcEEEEEEccCCCEEEEecCC------ceEEeeecCCceEEEeee
Q 022111          236 -----TVVIWTCAKEGEQWEGRVLKDFK---TPVWSVSWSLTGNLLAVADAN------NVTLWKEAVDGEWQQVSV  297 (302)
Q Consensus       236 -----~i~iwd~~~~~~~~~~~~~~~~~---~~v~~~~~spdg~~la~~~~d------~i~~w~~~~~~~~~~~~~  297 (302)
                           ++..+|....  .|...  ....   ..+..+.+  ++++.++|+.+      ++..||. +.+.|.+...
T Consensus       487 ~~~~~~VE~ydp~~~--~W~~v--~~m~~~rs~~g~~~~--~~~ly~vGG~~~~~~l~~ve~ydp-~~d~W~~~~~  555 (571)
T KOG4441|consen  487 TSALSSVERYDPETN--QWTMV--APMTSPRSAVGVVVL--GGKLYAVGGFDGNNNLNTVECYDP-ETDTWTEVTE  555 (571)
T ss_pred             CCccceEEEEcCCCC--ceeEc--ccCccccccccEEEE--CCEEEEEecccCccccceeEEcCC-CCCceeeCCC
Confidence                 3666777654  35322  2222   22222332  56677777654      3556653 4567877654

>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species

Probab=96.42  E-value=0.44  Score=39.69  Aligned_cols=204  Identities=15%  Similarity=0.193  Sum_probs=105.6

Q ss_pred             EEEeeCCCCCCEEEEEeCCCeEEEEEcCCCCceeEEEEecCCCCCeeEEEec-CCCCCcEEEEEecCCcEEEEEecCCCC
Q 022111           60 QVAWAHPKFGSILASCSYDGQVIIWKEGNQNDWTQAHTFNDHKSSVNSIAWA-PHELGLSLACGSSDGNISVFTATADGG  138 (302)
Q Consensus        60 ~v~~~~~~~~~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~h~~~i~~l~~~-pd~~~~~l~sg~~d~~v~~~~~~~~~~  138 (302)
                      ++.|.+. .+.++++--..+.|..|+..+..    ...+....  ...+++. ++  +. ++.+.. +.+.++|..+. .
T Consensus         4 gp~~d~~-~g~l~~~D~~~~~i~~~~~~~~~----~~~~~~~~--~~G~~~~~~~--g~-l~v~~~-~~~~~~d~~~g-~   71 (246)
T PF08450_consen    4 GPVWDPR-DGRLYWVDIPGGRIYRVDPDTGE----VEVIDLPG--PNGMAFDRPD--GR-LYVADS-GGIAVVDPDTG-K   71 (246)
T ss_dssp             EEEEETT-TTEEEEEETTTTEEEEEETTTTE----EEEEESSS--EEEEEEECTT--SE-EEEEET-TCEEEEETTTT-E
T ss_pred             ceEEECC-CCEEEEEEcCCCEEEEEECCCCe----EEEEecCC--CceEEEEccC--CE-EEEEEc-CceEEEecCCC-c
Confidence            4566542 36777777788999999986642    22222222  6667776 54  44 444444 44455575533 2


Q ss_pred             eee-eeec-cc-CCCCeEEEEeCCCCCCCceeecccCCCceeEEEeeCCCc------EEEEEEecCccccccccccccCC
Q 022111          139 WDT-TRID-QA-HPVGVTSVSWAPAMAPGALVGLGLLDPVQKLASCGCDNT------VKVWKMYNGIWKMDCFPALQMHS  209 (302)
Q Consensus       139 ~~~-~~~~-~~-h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~D~~------v~iwd~~~~~~~~~~~~~~~~h~  209 (302)
                      +.. .... .. .....+.+++.|++              .+.++......      =+||.+.... +...   ....-
T Consensus        72 ~~~~~~~~~~~~~~~~~ND~~vd~~G--------------~ly~t~~~~~~~~~~~~g~v~~~~~~~-~~~~---~~~~~  133 (246)
T PF08450_consen   72 VTVLADLPDGGVPFNRPNDVAVDPDG--------------NLYVTDSGGGGASGIDPGSVYRIDPDG-KVTV---VADGL  133 (246)
T ss_dssp             EEEEEEEETTCSCTEEEEEEEE-TTS---------------EEEEEECCBCTTCGGSEEEEEEETTS-EEEE---EEEEE
T ss_pred             EEEEeeccCCCcccCCCceEEEcCCC--------------CEEEEecCCCccccccccceEEECCCC-eEEE---EecCc
Confidence            221 2211 11 22345667776653              44554433211      2333333221 1111   11112


Q ss_pred             CceeEEEeeCCCCCCccEEEEEecCCeEEEEEeccCCccee-eeeeccCC---CcEEEEEEccCCCEEEEecC-CceEEe
Q 022111          210 DWVRSVAWAPNLGLPKSTIASASQDGTVVIWTCAKEGEQWE-GRVLKDFK---TPVWSVSWSLTGNLLAVADA-NNVTLW  284 (302)
Q Consensus       210 ~~v~~v~~~p~~~~~~~~l~s~s~D~~i~iwd~~~~~~~~~-~~~~~~~~---~~v~~~~~spdg~~la~~~~-d~i~~w  284 (302)
                      ..-+.|+|+|++   ...+++-+..+.|..+++........ .+...+..   ...-.+++.++|++.++.-. +.|.++
T Consensus       134 ~~pNGi~~s~dg---~~lyv~ds~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~l~va~~~~~~I~~~  210 (246)
T PF08450_consen  134 GFPNGIAFSPDG---KTLYVADSFNGRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGNLWVADWGGGRIVVF  210 (246)
T ss_dssp             SSEEEEEEETTS---SEEEEEETTTTEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS-EEEEEETTTEEEEE
T ss_pred             ccccceEECCcc---hheeecccccceeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCCCEEEEEcCCCEEEEE
Confidence            335899999996   23456778888898888865432111 12222222   23678999999988766544 478888


Q ss_pred             eecCCce-EEEeeec
Q 022111          285 KEAVDGE-WQQVSVV  298 (302)
Q Consensus       285 ~~~~~~~-~~~~~~~  298 (302)
                      +..  |. ......+
T Consensus       211 ~p~--G~~~~~i~~p  223 (246)
T PF08450_consen  211 DPD--GKLLREIELP  223 (246)
T ss_dssp             ETT--SCEEEEEE-S
T ss_pred             CCC--ccEEEEEcCC
Confidence            854  44 4434333

These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....

>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A

Probab=96.31  E-value=0.49  Score=38.94  Aligned_cols=197  Identities=17%  Similarity=0.158  Sum_probs=94.7

Q ss_pred             CCCEEEEeeCCCcEEEEeecCCCceEEEEecCcccCeE-EEEeeCCCCCCEEEEEeCCCeEEEEEcCCCCceeEEEEec-
Q 022111           22 YGKRLATASSDSSIKIIGLSNSASQHLATLKGHRGPVW-QVAWAHPKFGSILASCSYDGQVIIWKEGNQNDWTQAHTFN-   99 (302)
Q Consensus        22 ~~~~l~s~~~d~~v~lw~~~~~~~~~~~~~~~h~~~v~-~v~~~~~~~~~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~-   99 (302)
                      ++..+++++.++.++.||..++  +.+..... ...+. .....    +..++.++.|+.+..+|..++.......... 
T Consensus        35 ~~~~v~~~~~~~~l~~~d~~tG--~~~W~~~~-~~~~~~~~~~~----~~~v~v~~~~~~l~~~d~~tG~~~W~~~~~~~  107 (238)
T PF13360_consen   35 DGGRVYVASGDGNLYALDAKTG--KVLWRFDL-PGPISGAPVVD----GGRVYVGTSDGSLYALDAKTGKVLWSIYLTSS  107 (238)
T ss_dssp             ETTEEEEEETTSEEEEEETTTS--EEEEEEEC-SSCGGSGEEEE----TTEEEEEETTSEEEEEETTTSCEEEEEEE-SS
T ss_pred             eCCEEEEEcCCCEEEEEECCCC--CEEEEeec-cccccceeeec----ccccccccceeeeEecccCCcceeeeeccccc
Confidence            4667777889999999997554  33333321 11111 11111    3556666788899999987765321111111 


Q ss_pred             -CCC-CCeeEEEecCCCCCcEEEEEecCCcEEEEEecCCCCeeeeeecccCCCCeEEEEeCCCCCCCceeecccCCCcee
Q 022111          100 -DHK-SSVNSIAWAPHELGLSLACGSSDGNISVFTATADGGWDTTRIDQAHPVGVTSVSWAPAMAPGALVGLGLLDPVQK  177 (302)
Q Consensus       100 -~h~-~~i~~l~~~pd~~~~~l~sg~~d~~v~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~  177 (302)
                       ... .......+.    +..++.+..++.+..+|..++..  ..............+...     ....+.....++ .
T Consensus       108 ~~~~~~~~~~~~~~----~~~~~~~~~~g~l~~~d~~tG~~--~w~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~-~  175 (238)
T PF13360_consen  108 PPAGVRSSSSPAVD----GDRLYVGTSSGKLVALDPKTGKL--LWKYPVGEPRGSSPISSF-----SDINGSPVISDG-R  175 (238)
T ss_dssp             CTCSTB--SEEEEE----TTEEEEEETCSEEEEEETTTTEE--EEEEESSTT-SS--EEEE-----TTEEEEEECCTT-E
T ss_pred             cccccccccCceEe----cCEEEEEeccCcEEEEecCCCcE--EEEeecCCCCCCcceeee-----cccccceEEECC-E
Confidence             011 111222222    34678888899999998765432  122211110100100000     000000011123 5


Q ss_pred             EEEeeCCCc-EEEEEEecCccccccccccccCCCceeEEEeeCCCCCCccEEEEEecCCeEEEEEeccCCcce
Q 022111          178 LASCGCDNT-VKVWKMYNGIWKMDCFPALQMHSDWVRSVAWAPNLGLPKSTIASASQDGTVVIWTCAKEGEQW  249 (302)
Q Consensus       178 l~s~~~D~~-v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~l~s~s~D~~i~iwd~~~~~~~~  249 (302)
                      +..++.++. +.+ |+.++.....  ....    .+..+ ..++    +..|..++.++.|.+||+++.+..|
T Consensus       176 v~~~~~~g~~~~~-d~~tg~~~w~--~~~~----~~~~~-~~~~----~~~l~~~~~~~~l~~~d~~tG~~~W  236 (238)
T PF13360_consen  176 VYVSSGDGRVVAV-DLATGEKLWS--KPIS----GIYSL-PSVD----GGTLYVTSSDGRLYALDLKTGKVVW  236 (238)
T ss_dssp             EEEECCTSSEEEE-ETTTTEEEEE--ECSS-----ECEC-EECC----CTEEEEEETTTEEEEEETTTTEEEE
T ss_pred             EEEEcCCCeEEEE-ECCCCCEEEE--ecCC----CccCC-ceee----CCEEEEEeCCCEEEEEECCCCCEEe
Confidence            555555664 555 8877641110  0011    12221 1223    3667777799999999998654333

...

>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []

Probab=96.23  E-value=0.59  Score=39.12  Aligned_cols=207  Identities=11%  Similarity=0.171  Sum_probs=103.4

Q ss_pred             EecCcccCeEEEEeeCCCCCCEEEEEeCCCeEEEEEcCCCCceeEEEEecCCCCCeeEEEecCCCCCcEEEEEecCCcEE
Q 022111           50 TLKGHRGPVWQVAWAHPKFGSILASCSYDGQVIIWKEGNQNDWTQAHTFNDHKSSVNSIAWAPHELGLSLACGSSDGNIS  129 (302)
Q Consensus        50 ~~~~h~~~v~~v~~~~~~~~~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~h~~~i~~l~~~pd~~~~~l~sg~~d~~v~  129 (302)
                      .+.+-...+..|+|.++ .+++++.....+.|...+.+ +.. .....+.+ .+-.-.|++.-+  +.++++--.++.+.
T Consensus        16 ~l~g~~~e~SGLTy~pd-~~tLfaV~d~~~~i~els~~-G~v-lr~i~l~g-~~D~EgI~y~g~--~~~vl~~Er~~~L~   89 (248)
T PF06977_consen   16 PLPGILDELSGLTYNPD-TGTLFAVQDEPGEIYELSLD-GKV-LRRIPLDG-FGDYEGITYLGN--GRYVLSEERDQRLY   89 (248)
T ss_dssp             E-TT--S-EEEEEEETT-TTEEEEEETTTTEEEEEETT---E-EEEEE-SS--SSEEEEEE-ST--TEEEEEETTTTEEE
T ss_pred             ECCCccCCccccEEcCC-CCeEEEEECCCCEEEEEcCC-CCE-EEEEeCCC-CCCceeEEEECC--CEEEEEEcCCCcEE
Confidence            45565667999999875 35677777778887777753 221 11222333 234567777654  55555555688888


Q ss_pred             EEEecCCCC-eee-----eeec--ccCCCCeEEEEeCCCCCCCceeecccCCCceeEEEeeCCCcEEEEEEec--Ccccc
Q 022111          130 VFTATADGG-WDT-----TRID--QAHPVGVTSVSWAPAMAPGALVGLGLLDPVQKLASCGCDNTVKVWKMYN--GIWKM  199 (302)
Q Consensus       130 ~~~~~~~~~-~~~-----~~~~--~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~D~~v~iwd~~~--~~~~~  199 (302)
                      ++++..... ...     ..+.  ..+...+..++|+|..              +.|+.+-.....+||.++.  ....+
T Consensus        90 ~~~~~~~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~--------------~~L~v~kE~~P~~l~~~~~~~~~~~~  155 (248)
T PF06977_consen   90 IFTIDDDTTSLDRADVQKISLGFPNKGNKGFEGLAYDPKT--------------NRLFVAKERKPKRLYEVNGFPGGFDL  155 (248)
T ss_dssp             EEEE----TT--EEEEEEEE---S---SS--EEEEEETTT--------------TEEEEEEESSSEEEEEEESTT-SS--
T ss_pred             EEEEeccccccchhhceEEecccccCCCcceEEEEEcCCC--------------CEEEEEeCCCChhhEEEccccCccce
Confidence            888743221 111     1111  1234567889998854              3344445556677777764  11000


Q ss_pred             c-----cccccccCCCceeEEEeeCCCCCCccEEEEEecCCeEEEEEeccCCccee-eeeeccCC------CcEEEEEEc
Q 022111          200 D-----CFPALQMHSDWVRSVAWAPNLGLPKSTIASASQDGTVVIWTCAKEGEQWE-GRVLKDFK------TPVWSVSWS  267 (302)
Q Consensus       200 ~-----~~~~~~~h~~~v~~v~~~p~~~~~~~~l~s~s~D~~i~iwd~~~~~~~~~-~~~~~~~~------~~v~~~~~s  267 (302)
                      .     ..........-+.+++++|..   +..++-+.+.+.|-+.|....  ... ..+..++.      -..-.|+|.
T Consensus       156 ~~~~~~~~~~~~~~~~d~S~l~~~p~t---~~lliLS~es~~l~~~d~~G~--~~~~~~L~~g~~gl~~~~~QpEGIa~d  230 (248)
T PF06977_consen  156 FVSDDQDLDDDKLFVRDLSGLSYDPRT---GHLLILSDESRLLLELDRQGR--VVSSLSLDRGFHGLSKDIPQPEGIAFD  230 (248)
T ss_dssp             EEEE-HHHH-HT--SS---EEEEETTT---TEEEEEETTTTEEEEE-TT----EEEEEE-STTGGG-SS---SEEEEEE-
T ss_pred             eeccccccccccceeccccceEEcCCC---CeEEEEECCCCeEEEECCCCC--EEEEEEeCCcccCcccccCCccEEEEC
Confidence            0     001111233347889999974   577888888999999885432  111 11112211      235689999


Q ss_pred             cCCCEEEEecCCce
Q 022111          268 LTGNLLAVADANNV  281 (302)
Q Consensus       268 pdg~~la~~~~d~i  281 (302)
                      ++|++.++.-.+-.
T Consensus       231 ~~G~LYIvsEpNlf  244 (248)
T PF06977_consen  231 PDGNLYIVSEPNLF  244 (248)
T ss_dssp             TT--EEEEETTTEE
T ss_pred             CCCCEEEEcCCceE
Confidence            99999888865533

Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.

>PRK13616 lipoprotein LpqB; Provisional

Probab=96.18  E-value=0.77  Score=43.62  Aligned_cols=174  Identities=14%  Similarity=0.148  Sum_probs=86.4

Q ss_pred             CCCCeeEEEecCCCCCcEEEEEe------cCCcEEEEEecCCCCeeeeeecccCCCCeEEEEeCCCCCCCceeecccCCC
Q 022111          101 HKSSVNSIAWAPHELGLSLACGS------SDGNISVFTATADGGWDTTRIDQAHPVGVTSVSWAPAMAPGALVGLGLLDP  174 (302)
Q Consensus       101 h~~~i~~l~~~pd~~~~~l~sg~------~d~~v~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~  174 (302)
                      ....+...+++||  |..++...      .|..-.||-...++..  ..+..+.  ..+...|+|++.  .++...-...
T Consensus       348 ~~~~vsspaiSpd--G~~vA~v~~~~~~~~d~~s~Lwv~~~gg~~--~~lt~g~--~~t~PsWspDG~--~lw~v~dg~~  419 (591)
T PRK13616        348 QMGNITSAALSRS--GRQVAAVVTLGRGAPDPASSLWVGPLGGVA--VQVLEGH--SLTRPSWSLDAD--AVWVVVDGNT  419 (591)
T ss_pred             cccCcccceECCC--CCEEEEEEeecCCCCCcceEEEEEeCCCcc--eeeecCC--CCCCceECCCCC--ceEEEecCcc
Confidence            3346788899998  55555554      2444455544322221  1221122  367788998742  1110000000


Q ss_pred             ceeEEEeeCCCcEEEEEEecCccccccccccccCCCceeEEEeeCCCCCCccEEEEEecCCeEEEEEecc-CCcceee--
Q 022111          175 VQKLASCGCDNTVKVWKMYNGIWKMDCFPALQMHSDWVRSVAWAPNLGLPKSTIASASQDGTVVIWTCAK-EGEQWEG--  251 (302)
Q Consensus       175 ~~~l~s~~~D~~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~l~s~s~D~~i~iwd~~~-~~~~~~~--  251 (302)
                      -.++......+.+.+.++..+.    . ..  ...+.|.++.||||+    ..|+-.. ++.|.+=-+.. .......  
T Consensus       420 ~~~v~~~~~~gql~~~~vd~ge----~-~~--~~~g~Issl~wSpDG----~RiA~i~-~g~v~Va~Vvr~~~G~~~l~~  487 (591)
T PRK13616        420 VVRVIRDPATGQLARTPVDASA----V-AS--RVPGPISELQLSRDG----VRAAMII-GGKVYLAVVEQTEDGQYALTN  487 (591)
T ss_pred             eEEEeccCCCceEEEEeccCch----h-hh--ccCCCcCeEEECCCC----CEEEEEE-CCEEEEEEEEeCCCCceeecc
Confidence            0011111223344444554331    1 11  234569999999997    5555554 45555532222 1111100  


Q ss_pred             --eeeccCCCcEEEEEEccCCCEEEEecCCceEEeeecCCceEEE
Q 022111          252 --RVLKDFKTPVWSVSWSLTGNLLAVADANNVTLWKEAVDGEWQQ  294 (302)
Q Consensus       252 --~~~~~~~~~v~~~~~spdg~~la~~~~d~i~~w~~~~~~~~~~  294 (302)
                        .+.......+.+++|..++.+++........+|....+|....
T Consensus       488 ~~~l~~~l~~~~~~l~W~~~~~L~V~~~~~~~~v~~v~vDG~~~~  532 (591)
T PRK13616        488 PREVGPGLGDTAVSLDWRTGDSLVVGRSDPEHPVWYVNLDGSNSD  532 (591)
T ss_pred             cEEeecccCCccccceEecCCEEEEEecCCCCceEEEecCCcccc
Confidence              1122334456889999999866444323567888877777654

>PHA02713 hypothetical protein; Provisional

Probab=96.14  E-value=0.12  Score=48.79  Aligned_cols=152  Identities=10%  Similarity=0.106  Sum_probs=76.3

Q ss_pred             CCCEEEEeeCCC-----cEEEEeecCCCceEEEEecCcccCeEEEEeeCCCCCCEEEEEeCCC-----------------
Q 022111           22 YGKRLATASSDS-----SIKIIGLSNSASQHLATLKGHRGPVWQVAWAHPKFGSILASCSYDG-----------------   79 (302)
Q Consensus        22 ~~~~l~s~~~d~-----~v~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~s~D~-----------------   79 (302)
                      +++..+.||.++     ++..||........+..+.........+.+    ++++.+.|+.++                 
T Consensus       351 ~g~IYviGG~~~~~~~~sve~Ydp~~~~W~~~~~mp~~r~~~~~~~~----~g~IYviGG~~~~~~~~~~~~~~~~~~~~  426 (557)
T PHA02713        351 DDTIYAIGGQNGTNVERTIECYTMGDDKWKMLPDMPIALSSYGMCVL----DQYIYIIGGRTEHIDYTSVHHMNSIDMEE  426 (557)
T ss_pred             CCEEEEECCcCCCCCCceEEEEECCCCeEEECCCCCcccccccEEEE----CCEEEEEeCCCcccccccccccccccccc
Confidence            466777787654     367788765444433333211111112222    267778887653                 


Q ss_pred             ------eEEEEEcCCCCceeEEEEecCCCCCeeEEEecCCCCCcEEEEEecC------CcEEEEEecCCCCeeeee-ecc
Q 022111           80 ------QVIIWKEGNQNDWTQAHTFNDHKSSVNSIAWAPHELGLSLACGSSD------GNISVFTATADGGWDTTR-IDQ  146 (302)
Q Consensus        80 ------~i~iwd~~~~~~~~~~~~~~~h~~~i~~l~~~pd~~~~~l~sg~~d------~~v~~~~~~~~~~~~~~~-~~~  146 (302)
                            ++..||+.+ +.|..+............+.+  +  +.+.+.|+.+      ..+..||..+...|.... +. 
T Consensus       427 ~~~~~~~ve~YDP~t-d~W~~v~~m~~~r~~~~~~~~--~--~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~~m~-  500 (557)
T PHA02713        427 DTHSSNKVIRYDTVN-NIWETLPNFWTGTIRPGVVSH--K--DDIYVVCDIKDEKNVKTCIFRYNTNTYNGWELITTTE-  500 (557)
T ss_pred             cccccceEEEECCCC-CeEeecCCCCcccccCcEEEE--C--CEEEEEeCCCCCCccceeEEEecCCCCCCeeEccccC-
Confidence                  466787765 346544332211111122222  2  4556666654      235667765423454321 11 


Q ss_pred             cCCCCeEEEEeCCCCCCCceeecccCCCceeEEEeeCCC--cEEEEEEecCcccc
Q 022111          147 AHPVGVTSVSWAPAMAPGALVGLGLLDPVQKLASCGCDN--TVKVWKMYNGIWKM  199 (302)
Q Consensus       147 ~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~D~--~v~iwd~~~~~~~~  199 (302)
                      ...........                +++..+.||.|+  .+..||..+..|..
T Consensus       501 ~~r~~~~~~~~----------------~~~iyv~Gg~~~~~~~e~yd~~~~~W~~  539 (557)
T PHA02713        501 SRLSALHTILH----------------DNTIMMLHCYESYMLQDTFNVYTYEWNH  539 (557)
T ss_pred             cccccceeEEE----------------CCEEEEEeeecceeehhhcCcccccccc
Confidence            00011111111                257888999888  77889988887764

>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]

Probab=95.86  E-value=0.66  Score=42.19  Aligned_cols=166  Identities=15%  Similarity=0.172  Sum_probs=83.5

Q ss_pred             CCCCeeEEEecCCCCCcEEEEE---ecC-CcEEEEEecCCCCeeeeeecccCCCCeEEEEeCCCCCCCceeecccCCCce
Q 022111          101 HKSSVNSIAWAPHELGLSLACG---SSD-GNISVFTATADGGWDTTRIDQAHPVGVTSVSWAPAMAPGALVGLGLLDPVQ  176 (302)
Q Consensus       101 h~~~i~~l~~~pd~~~~~l~sg---~~d-~~v~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~  176 (302)
                      -...+..-+|+|+.  ..++..   ... ..+.++++..+......... +   ......|+|++             .+
T Consensus       191 ~~~~~~~p~ws~~~--~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~~~~-g---~~~~P~fspDG-------------~~  251 (425)
T COG0823         191 SGSLILTPAWSPDG--KKLAYVSFELGGCPRIYYLDLNTGKRPVILNFN-G---NNGAPAFSPDG-------------SK  251 (425)
T ss_pred             cCcceeccccCcCC--CceEEEEEecCCCceEEEEeccCCccceeeccC-C---ccCCccCCCCC-------------CE
Confidence            34556667788883  333322   112 34666776644322222211 2   22345677765             25


Q ss_pred             eEEEeeCCCc--EEEEEEecCccccccccccccCCCceeEEEeeCCCCCCccEEEEEecCCeEEEEEeccCCcceeeeee
Q 022111          177 KLASCGCDNT--VKVWKMYNGIWKMDCFPALQMHSDWVRSVAWAPNLGLPKSTIASASQDGTVVIWTCAKEGEQWEGRVL  254 (302)
Q Consensus       177 ~l~s~~~D~~--v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~l~s~s~D~~i~iwd~~~~~~~~~~~~~  254 (302)
                      .+++...|+.  |.+.|+.++.  ..   .+..-.+.-..=.|+|||   ...+.+.+..|.-.||-...+.... .++.
T Consensus       252 l~f~~~rdg~~~iy~~dl~~~~--~~---~Lt~~~gi~~~Ps~spdG---~~ivf~Sdr~G~p~I~~~~~~g~~~-~riT  322 (425)
T COG0823         252 LAFSSSRDGSPDIYLMDLDGKN--LP---RLTNGFGINTSPSWSPDG---SKIVFTSDRGGRPQIYLYDLEGSQV-TRLT  322 (425)
T ss_pred             EEEEECCCCCccEEEEcCCCCc--ce---ecccCCccccCccCCCCC---CEEEEEeCCCCCcceEEECCCCCce-eEee
Confidence            5666666776  4455655542  11   122112222245688886   2344455557776777665433221 1222


Q ss_pred             ccCCCcEEEEEEccCCCEEEEecCC----ceEEeeecCCceEEEe
Q 022111          255 KDFKTPVWSVSWSLTGNLLAVADAN----NVTLWKEAVDGEWQQV  295 (302)
Q Consensus       255 ~~~~~~v~~~~~spdg~~la~~~~d----~i~~w~~~~~~~~~~~  295 (302)
                      ....... .-.|||||++|+..+..    .|.+.+....+.|..+
T Consensus       323 ~~~~~~~-~p~~SpdG~~i~~~~~~~g~~~i~~~~~~~~~~~~~l  366 (425)
T COG0823         323 FSGGGNS-NPVWSPDGDKIVFESSSGGQWDIDKNDLASGGKIRIL  366 (425)
T ss_pred             ccCCCCc-CccCCCCCCEEEEEeccCCceeeEEeccCCCCcEEEc
Confidence            2222222 56799999999888742    2555554433334443

>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex

Probab=95.70  E-value=1.6  Score=39.63  Aligned_cols=66  Identities=24%  Similarity=0.371  Sum_probs=41.9

Q ss_pred             EEEccCCCEEEEeeCC----------C-cEEEEeecCCCceEEEEecCcccCeEEEEeeCCCCCCEEEEEeCCCeEEEEE
Q 022111           17 VAMDFYGKRLATASSD----------S-SIKIIGLSNSASQHLATLKGHRGPVWQVAWAHPKFGSILASCSYDGQVIIWK   85 (302)
Q Consensus        17 ~~~s~~~~~l~s~~~d----------~-~v~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~s~D~~i~iwd   85 (302)
                      ++..|.|--+|..-.+          . .|+||+..+   ..+.++.--.+.|.++.|..   ...|+....||+++++|
T Consensus        34 va~a~~gGpIAi~~d~~k~~~~~~~~p~~I~iys~sG---~ll~~i~w~~~~iv~~~wt~---~e~LvvV~~dG~v~vy~  107 (410)
T PF04841_consen   34 VAVAPYGGPIAIIRDESKLVPVGSAKPNSIQIYSSSG---KLLSSIPWDSGRIVGMGWTD---DEELVVVQSDGTVRVYD  107 (410)
T ss_pred             EEEcCCCceEEEEecCcccccccCCCCcEEEEECCCC---CEeEEEEECCCCEEEEEECC---CCeEEEEEcCCEEEEEe
Confidence            3445656555555433          1 488887654   33444332226888999964   35667778999999999


Q ss_pred             cCC
Q 022111           86 EGN   88 (302)
Q Consensus        86 ~~~   88 (302)
                      +..
T Consensus       108 ~~G  110 (410)
T PF04841_consen  108 LFG  110 (410)
T ss_pred             CCC
Confidence            853

Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm

>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain

Probab=95.63  E-value=0.041  Score=33.00  Aligned_cols=30  Identities=23%  Similarity=0.439  Sum_probs=26.5

Q ss_pred             CCcEEEEEEccCCCEEEEecCC-ceEEeeec
Q 022111          258 KTPVWSVSWSLTGNLLAVADAN-NVTLWKEA  287 (302)
Q Consensus       258 ~~~v~~~~~spdg~~la~~~~d-~i~~w~~~  287 (302)
                      ..+|..++|+|..++||.+..+ .|.+++.+
T Consensus        11 ~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl~   41 (47)
T PF12894_consen   11 PSRVSCMSWCPTMDLIALGTEDGEVLVYRLN   41 (47)
T ss_pred             CCcEEEEEECCCCCEEEEEECCCeEEEEECC
Confidence            4569999999999999999988 69999874

>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit

Probab=95.44  E-value=1.6  Score=38.02  Aligned_cols=191  Identities=13%  Similarity=0.199  Sum_probs=103.3

Q ss_pred             CCEEEEeeC----------CCcEEEEeecCC-----CceEEEEecCcccCeEEEEeeCCCCCCEEEEEeCCCeEEEEEcC
Q 022111           23 GKRLATASS----------DSSIKIIGLSNS-----ASQHLATLKGHRGPVWQVAWAHPKFGSILASCSYDGQVIIWKEG   87 (302)
Q Consensus        23 ~~~l~s~~~----------d~~v~lw~~~~~-----~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~s~D~~i~iwd~~   87 (302)
                      ..+++.|..          .|.+.++++...     ..+.+.. ....++|++|+-..   +.++++  ....+.+|++.
T Consensus        42 ~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l~~i~~-~~~~g~V~ai~~~~---~~lv~~--~g~~l~v~~l~  115 (321)
T PF03178_consen   42 KEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKLKLIHS-TEVKGPVTAICSFN---GRLVVA--VGNKLYVYDLD  115 (321)
T ss_dssp             SEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EEEEEEE-EEESS-EEEEEEET---TEEEEE--ETTEEEEEEEE
T ss_pred             cCEEEEEecccccccccccCcEEEEEEEEcccccceEEEEEEE-EeecCcceEhhhhC---CEEEEe--ecCEEEEEEcc
Confidence            357776652          288999998763     1222222 23578899998652   454333  34789999997


Q ss_pred             CCCceeEEEEecCCCCCeeEEEecCCCCCcEEEEEecCCcEEEEEecCCCC-eeeeeecccCCCCeEEEEeCCCCCCCce
Q 022111           88 NQNDWTQAHTFNDHKSSVNSIAWAPHELGLSLACGSSDGNISVFTATADGG-WDTTRIDQAHPVGVTSVSWAPAMAPGAL  166 (302)
Q Consensus        88 ~~~~~~~~~~~~~h~~~i~~l~~~pd~~~~~l~sg~~d~~v~~~~~~~~~~-~~~~~~~~~h~~~v~~~~~~~~~~~~~~  166 (302)
                      ..........+. ..-.+.++....    .+++.|+..+.+.++....... ..... ....+..++++.+-++      
T Consensus       116 ~~~~l~~~~~~~-~~~~i~sl~~~~----~~I~vgD~~~sv~~~~~~~~~~~l~~va-~d~~~~~v~~~~~l~d------  183 (321)
T PF03178_consen  116 NSKTLLKKAFYD-SPFYITSLSVFK----NYILVGDAMKSVSLLRYDEENNKLILVA-RDYQPRWVTAAEFLVD------  183 (321)
T ss_dssp             TTSSEEEEEEE--BSSSEEEEEEET----TEEEEEESSSSEEEEEEETTTE-EEEEE-EESS-BEEEEEEEE-S------
T ss_pred             Ccccchhhheec-ceEEEEEEeccc----cEEEEEEcccCEEEEEEEccCCEEEEEE-ecCCCccEEEEEEecC------
Confidence            654233333333 233677776653    3899999999999886554221 21111 1122344566655432      


Q ss_pred             eecccCCCceeEEEeeCCCcEEEEEEecCcc-------ccccccccccCCCceeEE---EeeCC-CCCC---ccEEEEEe
Q 022111          167 VGLGLLDPVQKLASCGCDNTVKVWKMYNGIW-------KMDCFPALQMHSDWVRSV---AWAPN-LGLP---KSTIASAS  232 (302)
Q Consensus       167 ~~~~~~~~~~~l~s~~~D~~v~iwd~~~~~~-------~~~~~~~~~~h~~~v~~v---~~~p~-~~~~---~~~l~s~s  232 (302)
                              +..++.+-.+|++.++.......       .+.....+. ..+.|+++   ++.|. ....   ...++-++
T Consensus       184 --------~~~~i~~D~~gnl~~l~~~~~~~~~~~~~~~L~~~~~f~-lg~~v~~~~~~~l~~~~~~~~~~~~~~i~~~T  254 (321)
T PF03178_consen  184 --------EDTIIVGDKDGNLFVLRYNPEIPNSRDGDPKLERISSFH-LGDIVNSFRRGSLIPRSGSSESPNRPQILYGT  254 (321)
T ss_dssp             --------SSEEEEEETTSEEEEEEE-SS-SSTTTTTTBEEEEEEEE--SS-EEEEEE--SS--SSSS-TTEEEEEEEEE
T ss_pred             --------CcEEEEEcCCCeEEEEEECCCCcccccccccceeEEEEE-CCCccceEEEEEeeecCCCCcccccceEEEEe
Confidence                    24788888999999998863210       111111111 24567877   55552 1100   12488888


Q ss_pred             cCCeEEEE
Q 022111          233 QDGTVVIW  240 (302)
Q Consensus       233 ~D~~i~iw  240 (302)
                      .+|.|-..
T Consensus       255 ~~G~Ig~l  262 (321)
T PF03178_consen  255 VDGSIGVL  262 (321)
T ss_dssp             TTS-EEEE
T ss_pred             cCCEEEEE
Confidence            99988744

CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....

>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals

Probab=95.31  E-value=2.1  Score=38.57  Aligned_cols=186  Identities=16%  Similarity=0.139  Sum_probs=90.2

Q ss_pred             EecCCCCCeeEEEecCCCCCcEEEEEecCCcEEEEEecCCCCeeeeeecc-----cCCCCeEEEEeCCCCCCCceeeccc
Q 022111           97 TFNDHKSSVNSIAWAPHELGLSLACGSSDGNISVFTATADGGWDTTRIDQ-----AHPVGVTSVSWAPAMAPGALVGLGL  171 (302)
Q Consensus        97 ~~~~h~~~i~~l~~~pd~~~~~l~sg~~d~~v~~~~~~~~~~~~~~~~~~-----~h~~~v~~~~~~~~~~~~~~~~~~~  171 (302)
                      -+....++|++++.|.-  | .+|.|..+|.+.|.|++...-.....+..     .....++++.|+.....+.-     
T Consensus        81 l~~~~~g~vtal~~S~i--G-Fvaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~-----  152 (395)
T PF08596_consen   81 LLDAKQGPVTALKNSDI--G-FVAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSIEFSVMTLGGDG-----  152 (395)
T ss_dssp             EE---S-SEEEEEE-BT--S-EEEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS----EEEEEEEEEE-TTSS-----
T ss_pred             heeccCCcEeEEecCCC--c-EEEEEecCCcEEEEECCCCeEEeeccccccccccccccCeeEEEEEEEecCCCc-----
Confidence            34455799999999732  4 79999999999999997432111112221     12345788888753211110     


Q ss_pred             CCCceeEEEeeCCCcEEEEEEec---CccccccccccccCCCceeEEE-eeCCCCC----------------CccEEEEE
Q 022111          172 LDPVQKLASCGCDNTVKVWKMYN---GIWKMDCFPALQMHSDWVRSVA-WAPNLGL----------------PKSTIASA  231 (302)
Q Consensus       172 ~~~~~~l~s~~~D~~v~iwd~~~---~~~~~~~~~~~~~h~~~v~~v~-~~p~~~~----------------~~~~l~s~  231 (302)
                       ..+-+|+.|...|.+.+|.+.-   +.+..........+.+.|..|. ++.+.+.                .-..++..
T Consensus       153 -ySSi~L~vGTn~G~v~~fkIlp~~~g~f~v~~~~~~~~~~~~i~~I~~i~~~~G~~a~At~~~~~~l~~g~~i~g~vVv  231 (395)
T PF08596_consen  153 -YSSICLLVGTNSGNVLTFKILPSSNGRFSVQFAGATTNHDSPILSIIPINADTGESALATISAMQGLSKGISIPGYVVV  231 (395)
T ss_dssp             -SEEEEEEEEETTSEEEEEEEEE-GGG-EEEEEEEEE--SS----EEEEEETTT--B-B-BHHHHHGGGGT----EEEEE
T ss_pred             -ccceEEEEEeCCCCEEEEEEecCCCCceEEEEeeccccCCCceEEEEEEECCCCCcccCchhHhhccccCCCcCcEEEE
Confidence             0124688888899999998852   2233333223335667776665 3333211                01224444


Q ss_pred             ecCCeEEEEEeccCCcceeeeeeccCCC--cEEEEEEc-----cCCCEEEEecCC-ceEEeeecCCceEEEee
Q 022111          232 SQDGTVVIWTCAKEGEQWEGRVLKDFKT--PVWSVSWS-----LTGNLLAVADAN-NVTLWKEAVDGEWQQVS  296 (302)
Q Consensus       232 s~D~~i~iwd~~~~~~~~~~~~~~~~~~--~v~~~~~s-----pdg~~la~~~~d-~i~~w~~~~~~~~~~~~  296 (302)
                      ..+..+|++..-..+.     ..+.+..  ...++.+-     ..+..|++-..+ .++++-...=++.....
T Consensus       232 vSe~~irv~~~~~~k~-----~~K~~~~~~~~~~~~vv~~~~~~~~~~Lv~l~~~G~i~i~SLP~Lkei~~~~  299 (395)
T PF08596_consen  232 VSESDIRVFKPPKSKG-----AHKSFDDPFLCSSASVVPTISRNGGYCLVCLFNNGSIRIYSLPSLKEIKSVS  299 (395)
T ss_dssp             E-SSEEEEE-TT---E-----EEEE-SS-EEEEEEEEEEEE-EEEEEEEEEEETTSEEEEEETTT--EEEEEE
T ss_pred             EcccceEEEeCCCCcc-----cceeeccccccceEEEEeecccCCceEEEEEECCCcEEEEECCCchHhhccc
Confidence            4567799998754321     1122233  22344442     245566666666 69999876544444433

The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.

>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A

Probab=95.27  E-value=1.8  Score=37.45  Aligned_cols=251  Identities=14%  Similarity=0.215  Sum_probs=106.2

Q ss_pred             ccccceeEEEEccCCCEEEEeeCCCcEEEEee-cCC-CceEEEEecCc---ccCeEEEEeeCCCCCCEEEEEeCCCeEEE
Q 022111            9 GHEDTVHDVAMDFYGKRLATASSDSSIKIIGL-SNS-ASQHLATLKGH---RGPVWQVAWAHPKFGSILASCSYDGQVII   83 (302)
Q Consensus         9 ~h~~~v~~~~~s~~~~~l~s~~~d~~v~lw~~-~~~-~~~~~~~~~~h---~~~v~~v~~~~~~~~~~l~s~s~D~~i~i   83 (302)
                      +-...+.+|.|..+.+-++. +..++|  +.. +.+ +.+... ....   .-...+|.|..   ...++. +..+. .+
T Consensus        14 ~t~~~l~dV~F~d~~~G~~V-G~~g~i--l~T~DGG~tW~~~~-~~~~~~~~~~l~~I~f~~---~~g~iv-G~~g~-ll   84 (302)
T PF14870_consen   14 PTDKPLLDVAFVDPNHGWAV-GAYGTI--LKTTDGGKTWQPVS-LDLDNPFDYHLNSISFDG---NEGWIV-GEPGL-LL   84 (302)
T ss_dssp             S-SS-EEEEEESSSS-EEEE-ETTTEE--EEESSTTSS-EE------S-----EEEEEEEET---TEEEEE-EETTE-EE
T ss_pred             CCCCceEEEEEecCCEEEEE-ecCCEE--EEECCCCccccccc-cCCCccceeeEEEEEecC---CceEEE-cCCce-EE
Confidence            44568899999855555555 455654  222 221 122211 1111   11256777753   234444 45554 33


Q ss_pred             EEcCCCCceeEEEEecCCCCCeeEEEecCCCCCcEEEEEecCCcEEEEEecCCC-CeeeeeecccCCCCeEEEEeCCCCC
Q 022111           84 WKEGNQNDWTQAHTFNDHKSSVNSIAWAPHELGLSLACGSSDGNISVFTATADG-GWDTTRIDQAHPVGVTSVSWAPAMA  162 (302)
Q Consensus        84 wd~~~~~~~~~~~~~~~h~~~i~~l~~~pd~~~~~l~sg~~d~~v~~~~~~~~~-~~~~~~~~~~h~~~v~~~~~~~~~~  162 (302)
                      -....+..|..+..-....+....+....+  +..++. +..+.  +|.....+ .|.....  .-...+..+.-++   
T Consensus        85 ~T~DgG~tW~~v~l~~~lpgs~~~i~~l~~--~~~~l~-~~~G~--iy~T~DgG~tW~~~~~--~~~gs~~~~~r~~---  154 (302)
T PF14870_consen   85 HTTDGGKTWERVPLSSKLPGSPFGITALGD--GSAELA-GDRGA--IYRTTDGGKTWQAVVS--ETSGSINDITRSS---  154 (302)
T ss_dssp             EESSTTSS-EE----TT-SS-EEEEEEEET--TEEEEE-ETT----EEEESSTTSSEEEEE---S----EEEEEE-T---
T ss_pred             EecCCCCCcEEeecCCCCCCCeeEEEEcCC--CcEEEE-cCCCc--EEEeCCCCCCeeEccc--CCcceeEeEEECC---
Confidence            333445566654321112222233333222  223333 34444  45444333 4543221  2223455554444   


Q ss_pred             CCceeecccCCCceeEEEeeCCCcEEEEEEecCccccccccccccCCCceeEEEeeCCCCCCccEEEEEecCCeEEEEEe
Q 022111          163 PGALVGLGLLDPVQKLASCGCDNTVKVWKMYNGIWKMDCFPALQMHSDWVRSVAWAPNLGLPKSTIASASQDGTVVIWTC  242 (302)
Q Consensus       163 ~~~~~~~~~~~~~~~l~s~~~D~~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~l~s~s~D~~i~iwd~  242 (302)
                                 ++.+++.++....+.-||--...|..    .-......|.++.|.|++    ...+ ....|.|+.=+.
T Consensus       155 -----------dG~~vavs~~G~~~~s~~~G~~~w~~----~~r~~~~riq~~gf~~~~----~lw~-~~~Gg~~~~s~~  214 (302)
T PF14870_consen  155 -----------DGRYVAVSSRGNFYSSWDPGQTTWQP----HNRNSSRRIQSMGFSPDG----NLWM-LARGGQIQFSDD  214 (302)
T ss_dssp             -----------TS-EEEEETTSSEEEEE-TT-SS-EE----EE--SSS-EEEEEE-TTS-----EEE-EETTTEEEEEE-
T ss_pred             -----------CCcEEEEECcccEEEEecCCCccceE----EccCccceehhceecCCC----CEEE-EeCCcEEEEccC
Confidence                       34666666555545567643222321    112235679999999985    3333 448888887662


Q ss_pred             ccCCcceeeeeecc--CCCcEEEEEEccCCCEEEEecCCceEEeeecCCce-EEEeeecCC
Q 022111          243 AKEGEQWEGRVLKD--FKTPVWSVSWSLTGNLLAVADANNVTLWKEAVDGE-WQQVSVVEP  300 (302)
Q Consensus       243 ~~~~~~~~~~~~~~--~~~~v~~~~~spdg~~la~~~~d~i~~w~~~~~~~-~~~~~~~~~  300 (302)
                      ......|.......  -.-.+..++|.++++..|+|++.+  |+...+.|. |++..+.++
T Consensus       215 ~~~~~~w~~~~~~~~~~~~~~ld~a~~~~~~~wa~gg~G~--l~~S~DgGktW~~~~~~~~  273 (302)
T PF14870_consen  215 PDDGETWSEPIIPIKTNGYGILDLAYRPPNEIWAVGGSGT--LLVSTDGGKTWQKDRVGEN  273 (302)
T ss_dssp             TTEEEEE---B-TTSS--S-EEEEEESSSS-EEEEESTT---EEEESSTTSS-EE-GGGTT
T ss_pred             CCCccccccccCCcccCceeeEEEEecCCCCEEEEeCCcc--EEEeCCCCccceECccccC
Confidence            22222233211111  122488999999999999887663  333434444 999988664

>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]

Probab=94.93  E-value=1.6  Score=41.47  Aligned_cols=187  Identities=19%  Similarity=0.260  Sum_probs=93.0

Q ss_pred             CCCEEEEeeCC------CcEEEEeecCCCceEEEEecCcccCeEEEEeeCCCCCCEEEEEeCCCe-----EEEEEcCCCC
Q 022111           22 YGKRLATASSD------SSIKIIGLSNSASQHLATLKGHRGPVWQVAWAHPKFGSILASCSYDGQ-----VIIWKEGNQN   90 (302)
Q Consensus        22 ~~~~l~s~~~d------~~v~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~s~D~~-----i~iwd~~~~~   90 (302)
                      ++...++||.|      .++..||........+..+...-... +++..   +|.+.|.|+.||.     +-.||..+ +
T Consensus       332 ~~~lYv~GG~~~~~~~l~~ve~YD~~~~~W~~~a~M~~~R~~~-~v~~l---~g~iYavGG~dg~~~l~svE~YDp~~-~  406 (571)
T KOG4441|consen  332 NGKLYVVGGYDSGSDRLSSVERYDPRTNQWTPVAPMNTKRSDF-GVAVL---DGKLYAVGGFDGEKSLNSVECYDPVT-N  406 (571)
T ss_pred             CCEEEEEccccCCCcccceEEEecCCCCceeccCCccCccccc-eeEEE---CCEEEEEeccccccccccEEEecCCC-C
Confidence            46788889988      34666776555444444443222112 22322   3788899998865     55577654 3


Q ss_pred             ceeEEEEecCCCCCeeEEEecCCCCCcEEEEEecCC------cEEEEEecCCCCeeee-eecccCCCCeEEEEeCCCCCC
Q 022111           91 DWTQAHTFNDHKSSVNSIAWAPHELGLSLACGSSDG------NISVFTATADGGWDTT-RIDQAHPVGVTSVSWAPAMAP  163 (302)
Q Consensus        91 ~~~~~~~~~~h~~~i~~l~~~pd~~~~~l~sg~~d~------~v~~~~~~~~~~~~~~-~~~~~h~~~v~~~~~~~~~~~  163 (302)
                      .|..+............+.+.    |.+.+.|+.++      ++..||..+ +.|... .+... ........       
T Consensus       407 ~W~~va~m~~~r~~~gv~~~~----g~iYi~GG~~~~~~~l~sve~YDP~t-~~W~~~~~M~~~-R~~~g~a~-------  473 (571)
T KOG4441|consen  407 KWTPVAPMLTRRSGHGVAVLG----GKLYIIGGGDGSSNCLNSVECYDPET-NTWTLIAPMNTR-RSGFGVAV-------  473 (571)
T ss_pred             cccccCCCCcceeeeEEEEEC----CEEEEEcCcCCCccccceEEEEcCCC-CceeecCCcccc-cccceEEE-------
Confidence            454433221111122222232    66777777654      344565442 234321 10000 00000000       


Q ss_pred             CceeecccCCCceeEEEeeCCCc-----EEEEEEecCccccccccccccCCCceeEEEeeCCCCCCccEEEEEecCCe--
Q 022111          164 GALVGLGLLDPVQKLASCGCDNT-----VKVWKMYNGIWKMDCFPALQMHSDWVRSVAWAPNLGLPKSTIASASQDGT--  236 (302)
Q Consensus       164 ~~~~~~~~~~~~~~l~s~~~D~~-----v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~l~s~s~D~~--  236 (302)
                               -++..++.||.|+.     |..||..+..|..-.  ........+..+.+.      +...+.|+.|+.  
T Consensus       474 ---------~~~~iYvvGG~~~~~~~~~VE~ydp~~~~W~~v~--~m~~~rs~~g~~~~~------~~ly~vGG~~~~~~  536 (571)
T KOG4441|consen  474 ---------LNGKIYVVGGFDGTSALSSVERYDPETNQWTMVA--PMTSPRSAVGVVVLG------GKLYAVGGFDGNNN  536 (571)
T ss_pred             ---------ECCEEEEECCccCCCccceEEEEcCCCCceeEcc--cCccccccccEEEEC------CEEEEEecccCccc
Confidence                     02467788887763     777998888776432  122222222233322      356778877774  


Q ss_pred             ---EEEEEec
Q 022111          237 ---VVIWTCA  243 (302)
Q Consensus       237 ---i~iwd~~  243 (302)
                         +..||..
T Consensus       537 l~~ve~ydp~  546 (571)
T KOG4441|consen  537 LNTVECYDPE  546 (571)
T ss_pred             cceeEEcCCC
Confidence               5555443

>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length

Probab=94.91  E-value=0.86  Score=43.25  Aligned_cols=109  Identities=16%  Similarity=0.357  Sum_probs=71.4

Q ss_pred             ccCCCEEEEeeCCCcEEEEeecCCCceEEEEecCcccCeEEEEeeCCCCCCEEEEEeCCCeEEEEEc------CCCCcee
Q 022111           20 DFYGKRLATASSDSSIKIIGLSNSASQHLATLKGHRGPVWQVAWAHPKFGSILASCSYDGQVIIWKE------GNQNDWT   93 (302)
Q Consensus        20 s~~~~~l~s~~~d~~v~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~s~D~~i~iwd~------~~~~~~~   93 (302)
                      +.-++..+.-+...++.|||......+.-..+ ...+.|.++.|....+++.+.+.|..+.|.++--      .....|.
T Consensus        38 ss~~k~a~V~~~~~~LtIWD~~~~~lE~~~~f-~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~Q~R~dy~~~~p~w~  116 (631)
T PF12234_consen   38 SSIKKIAVVDSSRSELTIWDTRSGVLEYEESF-SEDDPIRDLDWTSTPDGQSILAVGFPHHVLLYTQLRYDYTNKGPSWA  116 (631)
T ss_pred             cccCcEEEEECCCCEEEEEEcCCcEEEEeeee-cCCCceeeceeeecCCCCEEEEEEcCcEEEEEEccchhhhcCCcccc
Confidence            34455555544556799999876554444445 4467899999977667888889999999999853      1122244


Q ss_pred             EEEE--ecCCC-CCeeEEEecCCCCCcEEEEEecCCcEEEEEe
Q 022111           94 QAHT--FNDHK-SSVNSIAWAPHELGLSLACGSSDGNISVFTA  133 (302)
Q Consensus        94 ~~~~--~~~h~-~~i~~l~~~pd~~~~~l~sg~~d~~v~~~~~  133 (302)
                      ++..  +..|+ .+|.+..|.++  |..++ |+ ++.+.+++-
T Consensus       117 ~i~~i~i~~~T~h~Igds~Wl~~--G~LvV-~s-GNqlfv~dk  155 (631)
T PF12234_consen  117 PIRKIDISSHTPHPIGDSIWLKD--GTLVV-GS-GNQLFVFDK  155 (631)
T ss_pred             eeEEEEeecCCCCCccceeEecC--CeEEE-Ee-CCEEEEECC
Confidence            4443  33454 78999999987  54433 32 567888753

This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.

>PRK13616 lipoprotein LpqB; Provisional

Probab=94.88  E-value=3.7  Score=39.13  Aligned_cols=211  Identities=17%  Similarity=0.219  Sum_probs=98.4

Q ss_pred             cCeEEEEeeCCCCCCEEEEEe------CCCeEEEEEcCCCCceeEEEEecCCCCCeeEEEecCCCCCcEEEEEecCCc-E
Q 022111           56 GPVWQVAWAHPKFGSILASCS------YDGQVIIWKEGNQNDWTQAHTFNDHKSSVNSIAWAPHELGLSLACGSSDGN-I  128 (302)
Q Consensus        56 ~~v~~v~~~~~~~~~~l~s~s------~D~~i~iwd~~~~~~~~~~~~~~~h~~~i~~l~~~pd~~~~~l~sg~~d~~-v  128 (302)
                      ..+.+.+++++  |+.+|..-      .|..-.||-.........+  ..+  .....-.|+||  |..|++.+..+. .
T Consensus       350 ~~vsspaiSpd--G~~vA~v~~~~~~~~d~~s~Lwv~~~gg~~~~l--t~g--~~~t~PsWspD--G~~lw~v~dg~~~~  421 (591)
T PRK13616        350 GNITSAALSRS--GRQVAAVVTLGRGAPDPASSLWVGPLGGVAVQV--LEG--HSLTRPSWSLD--ADAVWVVVDGNTVV  421 (591)
T ss_pred             cCcccceECCC--CCEEEEEEeecCCCCCcceEEEEEeCCCcceee--ecC--CCCCCceECCC--CCceEEEecCcceE
Confidence            35677788764  67665554      3555566643222211121  122  23677789998  456666654322 2


Q ss_pred             EEEEecCCCCeeeeeec-----ccCCCCeEEEEeCCCCCCCceeecccCCCceeEEEeeCCCcEEE---EEEecCccccc
Q 022111          129 SVFTATADGGWDTTRID-----QAHPVGVTSVSWAPAMAPGALVGLGLLDPVQKLASCGCDNTVKV---WKMYNGIWKMD  200 (302)
Q Consensus       129 ~~~~~~~~~~~~~~~~~-----~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~D~~v~i---wd~~~~~~~~~  200 (302)
                      ++.+....+......+.     +.....|..+.|+|++              .+++--. ++.|++   -....+...+.
T Consensus       422 ~v~~~~~~gql~~~~vd~ge~~~~~~g~Issl~wSpDG--------------~RiA~i~-~g~v~Va~Vvr~~~G~~~l~  486 (591)
T PRK13616        422 RVIRDPATGQLARTPVDASAVASRVPGPISELQLSRDG--------------VRAAMII-GGKVYLAVVEQTEDGQYALT  486 (591)
T ss_pred             EEeccCCCceEEEEeccCchhhhccCCCcCeEEECCCC--------------CEEEEEE-CCEEEEEEEEeCCCCceeec
Confidence            22221111111111111     0123469999999985              3333322 345555   22222221111


Q ss_pred             cccccc-cCCCceeEEEeeCCCCCCccEEEEEecCCeEEEEEeccCCcceeeeee-ccCCCcEEEEEEccCCCEEEEecC
Q 022111          201 CFPALQ-MHSDWVRSVAWAPNLGLPKSTIASASQDGTVVIWTCAKEGEQWEGRVL-KDFKTPVWSVSWSLTGNLLAVADA  278 (302)
Q Consensus       201 ~~~~~~-~h~~~v~~v~~~p~~~~~~~~l~s~s~D~~i~iwd~~~~~~~~~~~~~-~~~~~~v~~~~~spdg~~la~~~~  278 (302)
                      ....+. +-...+.++.|.+++     .|+.+..++.-.+|.+.-.+.... .+. .....++.+|+=+++  -|.++++
T Consensus       487 ~~~~l~~~l~~~~~~l~W~~~~-----~L~V~~~~~~~~v~~v~vDG~~~~-~~~~~n~~~~v~~vaa~~~--~iyv~~~  558 (591)
T PRK13616        487 NPREVGPGLGDTAVSLDWRTGD-----SLVVGRSDPEHPVWYVNLDGSNSD-ALPSRNLSAPVVAVAASPS--TVYVTDA  558 (591)
T ss_pred             ccEEeecccCCccccceEecCC-----EEEEEecCCCCceEEEecCCcccc-ccCCCCccCceEEEecCCc--eEEEEcC
Confidence            111121 223346789998874     355666666556676543221111 111 112456777776663  3445555


Q ss_pred             CceEEeee--cCCceEEEeee
Q 022111          279 NNVTLWKE--AVDGEWQQVSV  297 (302)
Q Consensus       279 d~i~~w~~--~~~~~~~~~~~  297 (302)
                      +++.....  ..+..|-++.-
T Consensus       559 ~g~~~l~~~~~~~~~W~ev~~  579 (591)
T PRK13616        559 RAVLQLPNSDSGDQYWREVPG  579 (591)
T ss_pred             CceEEecCCCCCCCCceECcc
Confidence            55433332  22334776553

>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]

Probab=94.86  E-value=0.13  Score=50.56  Aligned_cols=103  Identities=17%  Similarity=0.299  Sum_probs=67.5

Q ss_pred             CCEEEEeeCCCcEEEEeecCCCceEEEEecCcccCeEEEEeeCCCCCCEEEEEeCCCeEEEEEcCCCCceeEEEEecCCC
Q 022111           23 GKRLATASSDSSIKIIGLSNSASQHLATLKGHRGPVWQVAWAHPKFGSILASCSYDGQVIIWKEGNQNDWTQAHTFNDHK  102 (302)
Q Consensus        23 ~~~l~s~~~d~~v~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~h~  102 (302)
                      +..++.|+..|.+-+.|+... ..+...-..-.++|++++|+.  +|.+++.|-.+|.|.+||+..+.   ..+.+..|.
T Consensus        99 ~~~ivi~Ts~ghvl~~d~~~n-L~~~~~ne~v~~~Vtsvafn~--dg~~l~~G~~~G~V~v~D~~~~k---~l~~i~e~~  172 (1206)
T KOG2079|consen   99 VVPIVIGTSHGHVLLSDMTGN-LGPLHQNERVQGPVTSVAFNQ--DGSLLLAGLGDGHVTVWDMHRAK---ILKVITEHG  172 (1206)
T ss_pred             eeeEEEEcCchhhhhhhhhcc-cchhhcCCccCCcceeeEecC--CCceeccccCCCcEEEEEccCCc---ceeeeeecC
Confidence            457888888888888776532 111111112357899999974  58999999999999999997653   556666677


Q ss_pred             CCeeEEEecCC-CCCcEEEEEecCCcEEEEEe
Q 022111          103 SSVNSIAWAPH-ELGLSLACGSSDGNISVFTA  133 (302)
Q Consensus       103 ~~i~~l~~~pd-~~~~~l~sg~~d~~v~~~~~  133 (302)
                      .+...+-+.-- ..+..+.++...|.  +|..
T Consensus       173 ap~t~vi~v~~t~~nS~llt~D~~Gs--f~~l  202 (1206)
T KOG2079|consen  173 APVTGVIFVGRTSQNSKLLTSDTGGS--FWKL  202 (1206)
T ss_pred             CccceEEEEEEeCCCcEEEEccCCCc--eEEE
Confidence            66666654311 11335777766664  5654

>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain

Probab=94.73  E-value=0.12  Score=30.92  Aligned_cols=31  Identities=13%  Similarity=0.068  Sum_probs=28.1

Q ss_pred             ccceeEEEEccCCCEEEEeeCCCcEEEEeec
Q 022111           11 EDTVHDVAMDFYGKRLATASSDSSIKIIGLS   41 (302)
Q Consensus        11 ~~~v~~~~~s~~~~~l~s~~~d~~v~lw~~~   41 (302)
                      ...|..++|+|....||.+..+|.|.++.++
T Consensus        11 ~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl~   41 (47)
T PF12894_consen   11 PSRVSCMSWCPTMDLIALGTEDGEVLVYRLN   41 (47)
T ss_pred             CCcEEEEEECCCCCEEEEEECCCeEEEEECC
Confidence            3568999999999999999999999999874

>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=94.40  E-value=4  Score=37.39  Aligned_cols=220  Identities=17%  Similarity=0.219  Sum_probs=102.7

Q ss_pred             ceeEEEEccCCCEEEEeeCCCcEEEEeecCCCceEEEEecCcccCeEEEEeeCCCCCCEEEEEeCCCeEEEEEcCCCCce
Q 022111           13 TVHDVAMDFYGKRLATASSDSSIKIIGLSNSASQHLATLKGHRGPVWQVAWAHPKFGSILASCSYDGQVIIWKEGNQNDW   92 (302)
Q Consensus        13 ~v~~~~~s~~~~~l~s~~~d~~v~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~s~D~~i~iwd~~~~~~~   92 (302)
                      ....+.++|+|++++.+ .||...||.-..  .... .    .+.-....|.+.   ..+|+-....+|+|+.--+..  
T Consensus        34 ~p~~ls~npngr~v~V~-g~geY~iyt~~~--~r~k-~----~G~g~~~vw~~~---n~yAv~~~~~~I~I~kn~~~~--  100 (443)
T PF04053_consen   34 YPQSLSHNPNGRFVLVC-GDGEYEIYTALA--WRNK-A----FGSGLSFVWSSR---NRYAVLESSSTIKIYKNFKNE--  100 (443)
T ss_dssp             --SEEEE-TTSSEEEEE-ETTEEEEEETTT--TEEE-E----EEE-SEEEE-TS---SEEEEE-TTS-EEEEETTEE---
T ss_pred             CCeeEEECCCCCEEEEE-cCCEEEEEEccC--Cccc-c----cCceeEEEEecC---ccEEEEECCCeEEEEEcCccc--
Confidence            46779999999999885 477888876321  2221 1    122345778752   356777778899997421111  


Q ss_pred             eEEEEecCCCCCeeEEEecCCCCCcEEEEEecCCcEEEEEecCCCCeeeeeecccCCCCeEEEEeCCCCCCCceeecccC
Q 022111           93 TQAHTFNDHKSSVNSIAWAPHELGLSLACGSSDGNISVFTATADGGWDTTRIDQAHPVGVTSVSWAPAMAPGALVGLGLL  172 (302)
Q Consensus        93 ~~~~~~~~h~~~i~~l~~~pd~~~~~l~sg~~d~~v~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~  172 (302)
                       ....+.. ...+..+.-     |..|+..+. +.|.+||+.+..  ....+.   -.+|..+.|++++           
T Consensus       101 -~~k~i~~-~~~~~~If~-----G~LL~~~~~-~~i~~yDw~~~~--~i~~i~---v~~vk~V~Ws~~g-----------  156 (443)
T PF04053_consen  101 -VVKSIKL-PFSVEKIFG-----GNLLGVKSS-DFICFYDWETGK--LIRRID---VSAVKYVIWSDDG-----------  156 (443)
T ss_dssp             -TT------SS-EEEEE------SSSEEEEET-TEEEEE-TTT----EEEEES---S-E-EEEEE-TTS-----------
T ss_pred             -cceEEcC-CcccceEEc-----CcEEEEECC-CCEEEEEhhHcc--eeeEEe---cCCCcEEEEECCC-----------
Confidence             1112221 112344422     445555544 489999987542  223332   2237899999864           


Q ss_pred             CCceeEEEeeCCCcEEEEEEecCcc------cc-ccccccccCCCceeEEEeeCCCCCCccEEEEEecCCeEEEEEeccC
Q 022111          173 DPVQKLASCGCDNTVKVWKMYNGIW------KM-DCFPALQMHSDWVRSVAWAPNLGLPKSTIASASQDGTVVIWTCAKE  245 (302)
Q Consensus       173 ~~~~~l~s~~~D~~v~iwd~~~~~~------~~-~~~~~~~~h~~~v~~v~~~p~~~~~~~~l~s~s~D~~i~iwd~~~~  245 (302)
                         .+++-.+. ..+.|++-+....      -. ..+..+..-...|.+..|..+      .|+=.+.. .|+-+  .. 
T Consensus       157 ---~~val~t~-~~i~il~~~~~~~~~~~~~g~e~~f~~~~E~~~~IkSg~W~~d------~fiYtT~~-~lkYl--~~-  222 (443)
T PF04053_consen  157 ---ELVALVTK-DSIYILKYNLEAVAAIPEEGVEDAFELIHEISERIKSGCWVED------CFIYTTSN-HLKYL--VN-  222 (443)
T ss_dssp             ---SEEEEE-S--SEEEEEE-HHHHHHBTTTB-GGGEEEEEEE-S--SEEEEETT------EEEEE-TT-EEEEE--ET-
T ss_pred             ---CEEEEEeC-CeEEEEEecchhcccccccCchhceEEEEEecceeEEEEEEcC------EEEEEcCC-eEEEE--Ec-
Confidence               55666654 4688877542100      00 011111111456777777643      34333333 55542  21 


Q ss_pred             CcceeeeeeccCCCcEEEEEEccCCCEEEEecCC-ceEEeee
Q 022111          246 GEQWEGRVLKDFKTPVWSVSWSLTGNLLAVADAN-NVTLWKE  286 (302)
Q Consensus       246 ~~~~~~~~~~~~~~~v~~~~~spdg~~la~~~~d-~i~~w~~  286 (302)
                      ++   .........+++=+.+.|..+.|...+++ ++..+..
T Consensus       223 Ge---~~~i~~ld~~~yllgy~~~~~~ly~~Dr~~~v~~~~l  261 (443)
T PF04053_consen  223 GE---TGIIAHLDKPLYLLGYLPKENRLYLIDRDGNVISYEL  261 (443)
T ss_dssp             TE---EEEEEE-SS--EEEEEETTTTEEEEE-TT--EEEEE-
T ss_pred             CC---cceEEEcCCceEEEEEEccCCEEEEEECCCCEEEEEE
Confidence            11   12234445678888888877788788777 6776654

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.

>KOG2444 consensus WD40 repeat protein [General function prediction only]

Probab=94.23  E-value=0.2  Score=40.71  Aligned_cols=65  Identities=11%  Similarity=0.087  Sum_probs=38.4

Q ss_pred             CCEEEEeeCCCcEEEEeecCCCceEEEEecCcccCeEEEEeeCCCCCCEEEEEeCCCeEEEEEcCCC
Q 022111           23 GKRLATASSDSSIKIIGLSNSASQHLATLKGHRGPVWQVAWAHPKFGSILASCSYDGQVIIWKEGNQ   89 (302)
Q Consensus        23 ~~~l~s~~~d~~v~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~s~D~~i~iwd~~~~   89 (302)
                      +..++.|+.+|.|.+|+.... +........-...|.++ +..-.++.+..+++.|+.|+.|.+...
T Consensus        70 ~~~~~vG~~dg~v~~~n~n~~-g~~~d~~~s~~e~i~~~-Ip~~~~~~~~c~~~~dg~ir~~n~~p~  134 (238)
T KOG2444|consen   70 SAKLMVGTSDGAVYVFNWNLE-GAHSDRVCSGEESIDLG-IPNGRDSSLGCVGAQDGRIRACNIKPN  134 (238)
T ss_pred             CceEEeecccceEEEecCCcc-chHHHhhhcccccceec-cccccccceeEEeccCCceeeeccccC
Confidence            467888999999999987421 11110011111122222 222223568889999999999987544

>PF15390 DUF4613: Domain of unknown function (DUF4613)

Probab=93.88  E-value=5.6  Score=37.17  Aligned_cols=121  Identities=17%  Similarity=0.289  Sum_probs=64.7

Q ss_pred             CCCeEEEEeCCCCCCCceeecccCCCceeEEEeeCCCcEEEEEEecC-----ccccccccccccCCCce--eEEEeeCCC
Q 022111          149 PVGVTSVSWAPAMAPGALVGLGLLDPVQKLASCGCDNTVKVWKMYNG-----IWKMDCFPALQMHSDWV--RSVAWAPNL  221 (302)
Q Consensus       149 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~D~~v~iwd~~~~-----~~~~~~~~~~~~h~~~v--~~v~~~p~~  221 (302)
                      -.-|..+.|.|-...+          .-.|+.....+.|.||.+-..     ++.+....++ +..-+|  ..+-|+|..
T Consensus        56 FEhV~GlsW~P~~~~~----------~paLLAVQHkkhVtVWqL~~s~~e~~K~l~sQtcEi-~e~~pvLpQGCVWHPk~  124 (671)
T PF15390_consen   56 FEHVHGLSWAPPCTAD----------TPALLAVQHKKHVTVWQLCPSTTERNKLLMSQTCEI-REPFPVLPQGCVWHPKK  124 (671)
T ss_pred             cceeeeeeecCcccCC----------CCceEEEeccceEEEEEeccCccccccceeeeeeec-cCCcccCCCcccccCCC
Confidence            3448999999964221          124555667789999998521     1111100010 111112  246799974


Q ss_pred             CCCccEEEEEecCCeEEEEEeccCCcceeeeeeccCCCcEEEEEEccCCCEEEEecCC--ceEEeee
Q 022111          222 GLPKSTIASASQDGTVVIWTCAKEGEQWEGRVLKDFKTPVWSVSWSLTGNLLAVADAN--NVTLWKE  286 (302)
Q Consensus       222 ~~~~~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~la~~~~d--~i~~w~~  286 (302)
                          ..|+.=.....--+.+++.....-...  -...+-|.+..|.+||++|++|-+.  .-.+||.
T Consensus       125 ----~iL~VLT~~dvSV~~sV~~d~srVkaD--i~~~G~IhCACWT~DG~RLVVAvGSsLHSyiWd~  185 (671)
T PF15390_consen  125 ----AILTVLTARDVSVLPSVHCDSSRVKAD--IKTSGLIHCACWTKDGQRLVVAVGSSLHSYIWDS  185 (671)
T ss_pred             ----ceEEEEecCceeEeeeeeeCCceEEEe--ccCCceEEEEEecCcCCEEEEEeCCeEEEEEecC
Confidence                333333322222344554322111111  1234569999999999999888655  4678885

>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit

Probab=93.41  E-value=4.9  Score=34.98  Aligned_cols=138  Identities=14%  Similarity=0.195  Sum_probs=81.1

Q ss_pred             CeEEEEEcCCC----CceeEEEEecCCCCCeeEEEecCCCCCcEEEEEecCCcEEEEEecCCCCeeeeeecccCCCCeEE
Q 022111           79 GQVIIWKEGNQ----NDWTQAHTFNDHKSSVNSIAWAPHELGLSLACGSSDGNISVFTATADGGWDTTRIDQAHPVGVTS  154 (302)
Q Consensus        79 ~~i~iwd~~~~----~~~~~~~~~~~h~~~i~~l~~~pd~~~~~l~sg~~d~~v~~~~~~~~~~~~~~~~~~~h~~~v~~  154 (302)
                      |.+.++++...    .....+.... .+++|.+++--.   +. |+.+ ..+.|.+|++.....+...... .....+.+
T Consensus        62 Gri~v~~i~~~~~~~~~l~~i~~~~-~~g~V~ai~~~~---~~-lv~~-~g~~l~v~~l~~~~~l~~~~~~-~~~~~i~s  134 (321)
T PF03178_consen   62 GRILVFEISESPENNFKLKLIHSTE-VKGPVTAICSFN---GR-LVVA-VGNKLYVYDLDNSKTLLKKAFY-DSPFYITS  134 (321)
T ss_dssp             EEEEEEEECSS-----EEEEEEEEE-ESS-EEEEEEET---TE-EEEE-ETTEEEEEEEETTSSEEEEEEE--BSSSEEE
T ss_pred             cEEEEEEEEcccccceEEEEEEEEe-ecCcceEhhhhC---CE-EEEe-ecCEEEEEEccCcccchhhhee-cceEEEEE
Confidence            88999998763    2233333333 578899987652   44 4433 3589999999865422222111 12234555


Q ss_pred             EEeCCCCCCCceeecccCCCceeEEEeeCCCcEEEEEEecCccccccccccccCCCceeEEEeeCCCCCCccEEEEEecC
Q 022111          155 VSWAPAMAPGALVGLGLLDPVQKLASCGCDNTVKVWKMYNGIWKMDCFPALQMHSDWVRSVAWAPNLGLPKSTIASASQD  234 (302)
Q Consensus       155 ~~~~~~~~~~~~~~~~~~~~~~~l~s~~~D~~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~l~s~s~D  234 (302)
                      +...                +.+++.|..-..+.++..+.....+..+. -.....++.++.|-+++    +.++.+..+
T Consensus       135 l~~~----------------~~~I~vgD~~~sv~~~~~~~~~~~l~~va-~d~~~~~v~~~~~l~d~----~~~i~~D~~  193 (321)
T PF03178_consen  135 LSVF----------------KNYILVGDAMKSVSLLRYDEENNKLILVA-RDYQPRWVTAAEFLVDE----DTIIVGDKD  193 (321)
T ss_dssp             EEEE----------------TTEEEEEESSSSEEEEEEETTTE-EEEEE-EESS-BEEEEEEEE-SS----SEEEEEETT
T ss_pred             Eecc----------------ccEEEEEEcccCEEEEEEEccCCEEEEEE-ecCCCccEEEEEEecCC----cEEEEEcCC
Confidence            5432                24677777777788876654322222221 12345678999998774    589999999


Q ss_pred             CeEEEEEecc
Q 022111          235 GTVVIWTCAK  244 (302)
Q Consensus       235 ~~i~iwd~~~  244 (302)
                      |.+.++....
T Consensus       194 gnl~~l~~~~  203 (321)
T PF03178_consen  194 GNLFVLRYNP  203 (321)
T ss_dssp             SEEEEEEE-S
T ss_pred             CeEEEEEECC
Confidence            9999998863

CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....

>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length

Probab=93.26  E-value=5.1  Score=38.21  Aligned_cols=107  Identities=10%  Similarity=0.180  Sum_probs=59.6

Q ss_pred             CcEEEEEecCCcEEEEEecCCCCeeeeeecccCCCCeEEEEeCCCCCCCceeecccCCCceeEEEeeCCCcEEEEEEe--
Q 022111          116 GLSLACGSSDGNISVFTATADGGWDTTRIDQAHPVGVTSVSWAPAMAPGALVGLGLLDPVQKLASCGCDNTVKVWKMY--  193 (302)
Q Consensus       116 ~~~l~sg~~d~~v~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~D~~v~iwd~~--  193 (302)
                      ++..+.-+....+.|||..... ......- .....|..+.|....            +++.+++.|....|.+|--.  
T Consensus        41 ~k~a~V~~~~~~LtIWD~~~~~-lE~~~~f-~~~~~I~dLDWtst~------------d~qsiLaVGf~~~v~l~~Q~R~  106 (631)
T PF12234_consen   41 KKIAVVDSSRSELTIWDTRSGV-LEYEESF-SEDDPIRDLDWTSTP------------DGQSILAVGFPHHVLLYTQLRY  106 (631)
T ss_pred             CcEEEEECCCCEEEEEEcCCcE-EEEeeee-cCCCceeeceeeecC------------CCCEEEEEEcCcEEEEEEccch
Confidence            3333444445688999986432 2221110 235678999997543            45677888888888887531  


Q ss_pred             -----cCccccccccccccCC-CceeEEEeeCCCCCCccEEEEEecCCeEEEEEe
Q 022111          194 -----NGIWKMDCFPALQMHS-DWVRSVAWAPNLGLPKSTIASASQDGTVVIWTC  242 (302)
Q Consensus       194 -----~~~~~~~~~~~~~~h~-~~v~~v~~~p~~~~~~~~l~s~s~D~~i~iwd~  242 (302)
                           .+.|..-....+..|+ .+|.+..|-++|     .++.|+ +..+.|+|-
T Consensus       107 dy~~~~p~w~~i~~i~i~~~T~h~Igds~Wl~~G-----~LvV~s-GNqlfv~dk  155 (631)
T PF12234_consen  107 DYTNKGPSWAPIRKIDISSHTPHPIGDSIWLKDG-----TLVVGS-GNQLFVFDK  155 (631)
T ss_pred             hhhcCCcccceeEEEEeecCCCCCccceeEecCC-----eEEEEe-CCEEEEECC
Confidence                 1112110001122333 569999999986     343333 445777763

This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.

>KOG2444 consensus WD40 repeat protein [General function prediction only]

Probab=93.02  E-value=0.56  Score=38.17  Aligned_cols=103  Identities=15%  Similarity=0.059  Sum_probs=59.3

Q ss_pred             eeEEEeeCCCcEEEEEEecCccccccccccccCCCceeEEEeeCCCCCCccEEEEEecCCeEEEEEeccCCcceeeeeec
Q 022111          176 QKLASCGCDNTVKVWKMYNGIWKMDCFPALQMHSDWVRSVAWAPNLGLPKSTIASASQDGTVVIWTCAKEGEQWEGRVLK  255 (302)
Q Consensus       176 ~~l~s~~~D~~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~  255 (302)
                      ..++.|+.++.|++|.........+.+   ..-...|-+.  -|.+. ++....+++.|+.||.|++.-.+..   ....
T Consensus        71 ~~~~vG~~dg~v~~~n~n~~g~~~d~~---~s~~e~i~~~--Ip~~~-~~~~~c~~~~dg~ir~~n~~p~k~~---g~~g  141 (238)
T KOG2444|consen   71 AKLMVGTSDGAVYVFNWNLEGAHSDRV---CSGEESIDLG--IPNGR-DSSLGCVGAQDGRIRACNIKPNKVL---GYVG  141 (238)
T ss_pred             ceEEeecccceEEEecCCccchHHHhh---hcccccceec--ccccc-ccceeEEeccCCceeeeccccCcee---eeec
Confidence            568899999999999875211111111   1112223332  23331 2457889999999999998643211   1112


Q ss_pred             cCC-CcEEEEEEccCCCEEEEe--cCC-ceEEeeec
Q 022111          256 DFK-TPVWSVSWSLTGNLLAVA--DAN-NVTLWKEA  287 (302)
Q Consensus       256 ~~~-~~v~~~~~spdg~~la~~--~~d-~i~~w~~~  287 (302)
                      .|. .++....-+..++.|+.+  +.+ .++.|++.
T Consensus       142 ~h~~~~~e~~ivv~sd~~i~~a~~S~d~~~k~W~ve  177 (238)
T KOG2444|consen  142 QHNFESGEELIVVGSDEFLKIADTSHDRVLKKWNVE  177 (238)
T ss_pred             cccCCCcceeEEecCCceEEeeccccchhhhhcchh
Confidence            333 344445555566777777  666 67888764

>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]

Probab=93.01  E-value=4.2  Score=37.45  Aligned_cols=143  Identities=13%  Similarity=0.107  Sum_probs=77.2

Q ss_pred             EEEeeCCCcEEEEeecCCCceEEEEecCcccCeEEEEeeCCCCCCEE-----EEEeCCCeEEEEEcCCCCc----eeEEE
Q 022111           26 LATASSDSSIKIIGLSNSASQHLATLKGHRGPVWQVAWAHPKFGSIL-----ASCSYDGQVIIWKEGNQND----WTQAH   96 (302)
Q Consensus        26 l~s~~~d~~v~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l-----~s~s~D~~i~iwd~~~~~~----~~~~~   96 (302)
                      |.++..-..++-.|++.  ++.+..-+-|.. |.-+.+.|+..+..|     +.|-.|..|.-||++-...    +...+
T Consensus       349 l~~~~~~~~l~klDIE~--GKIVeEWk~~~d-i~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~kl~~~q~k  425 (644)
T KOG2395|consen  349 LMDGGEQDKLYKLDIER--GKIVEEWKFEDD-INMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKNKLAVVQSK  425 (644)
T ss_pred             eeCCCCcCcceeeeccc--ceeeeEeeccCC-cceeeccCCcchhcccccccEEeecCCceEEecccccCcceeeeeecc
Confidence            34444445555556654  455555555554 555566554333222     3556688889999864332    22222


Q ss_pred             EecCCCCCeeEEEecCCCCCcEEEEEecCCcEEEEEecCCCCeeeeeecccCCCCeEEEEeCCCCCCCceeecccCCCce
Q 022111           97 TFNDHKSSVNSIAWAPHELGLSLACGSSDGNISVFTATADGGWDTTRIDQAHPVGVTSVSWAPAMAPGALVGLGLLDPVQ  176 (302)
Q Consensus        97 ~~~~h~~~i~~l~~~pd~~~~~l~sg~~d~~v~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~  176 (302)
                      .+.. .....|.+-.-  +| +++.||.+|.|+|||.. +.. ....+. +-..+|..+.-+.+              |+
T Consensus       426 qy~~-k~nFsc~aTT~--sG-~IvvgS~~GdIRLYdri-~~~-AKTAlP-gLG~~I~hVdvtad--------------GK  484 (644)
T KOG2395|consen  426 QYST-KNNFSCFATTE--SG-YIVVGSLKGDIRLYDRI-GRR-AKTALP-GLGDAIKHVDVTAD--------------GK  484 (644)
T ss_pred             cccc-ccccceeeecC--Cc-eEEEeecCCcEEeehhh-hhh-hhhccc-ccCCceeeEEeecc--------------Cc
Confidence            2321 12334444332  34 69999999999999863 111 111121 34456766654433              33


Q ss_pred             eEEEeeCCCcEEEEEEe
Q 022111          177 KLASCGCDNTVKVWKMY  193 (302)
Q Consensus       177 ~l~s~~~D~~v~iwd~~  193 (302)
                      . +-|.++.++-|.++.
T Consensus       485 w-il~Tc~tyLlLi~t~  500 (644)
T KOG2395|consen  485 W-ILATCKTYLLLIDTL  500 (644)
T ss_pred             E-EEEecccEEEEEEEe
Confidence            3 345557788888864

>PHA03098 kelch-like protein; Provisional

Probab=92.90  E-value=8.3  Score=36.23  Aligned_cols=69  Identities=13%  Similarity=0.130  Sum_probs=33.3

Q ss_pred             CCCEEEEeeCCC------cEEEEeecCCCceEEEEecCcccCeEEEEeeCCCCCCEEEEEeCC-----CeEEEEEcCCCC
Q 022111           22 YGKRLATASSDS------SIKIIGLSNSASQHLATLKGHRGPVWQVAWAHPKFGSILASCSYD-----GQVIIWKEGNQN   90 (302)
Q Consensus        22 ~~~~l~s~~~d~------~v~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~s~D-----~~i~iwd~~~~~   90 (302)
                      ++..++.||.++      .+..||........+..+.........+.+    ++++++.||.+     ..+..||+.+ +
T Consensus       294 ~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~R~~~~~~~~----~~~lyv~GG~~~~~~~~~v~~yd~~~-~  368 (534)
T PHA03098        294 NNVIYFIGGMNKNNLSVNSVVSYDTKTKSWNKVPELIYPRKNPGVTVF----NNRIYVIGGIYNSISLNTVESWKPGE-S  368 (534)
T ss_pred             CCEEEEECCCcCCCCeeccEEEEeCCCCeeeECCCCCcccccceEEEE----CCEEEEEeCCCCCEecceEEEEcCCC-C
Confidence            455666776543      355666654433332222211111112222    25777778765     3466677754 3


Q ss_pred             ceeEE
Q 022111           91 DWTQA   95 (302)
Q Consensus        91 ~~~~~   95 (302)
                      .|...
T Consensus       369 ~W~~~  373 (534)
T PHA03098        369 KWREE  373 (534)
T ss_pred             ceeeC
Confidence            45443

>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]

Probab=92.88  E-value=3.2  Score=38.13  Aligned_cols=98  Identities=12%  Similarity=0.040  Sum_probs=61.2

Q ss_pred             EEeeCCCcEEEEEEecCccccccccccccCC----CceeEEEeeCCCCCCccEEEEEecCCeEEEEEeccCCcceeeeee
Q 022111          179 ASCGCDNTVKVWKMYNGIWKMDCFPALQMHS----DWVRSVAWAPNLGLPKSTIASASQDGTVVIWTCAKEGEQWEGRVL  254 (302)
Q Consensus       179 ~s~~~D~~v~iwd~~~~~~~~~~~~~~~~h~----~~v~~v~~~p~~~~~~~~l~s~s~D~~i~iwd~~~~~~~~~~~~~  254 (302)
                      +.|-.|+.|.-||++-....  .+..-.+|.    ..-.|.+-..+     .+||.||.+|-||+||.-...+   ...+
T Consensus       398 lvGLs~n~vfriDpRv~~~~--kl~~~q~kqy~~k~nFsc~aTT~s-----G~IvvgS~~GdIRLYdri~~~A---KTAl  467 (644)
T KOG2395|consen  398 LVGLSDNSVFRIDPRVQGKN--KLAVVQSKQYSTKNNFSCFATTES-----GYIVVGSLKGDIRLYDRIGRRA---KTAL  467 (644)
T ss_pred             EEeecCCceEEecccccCcc--eeeeeeccccccccccceeeecCC-----ceEEEeecCCcEEeehhhhhhh---hhcc
Confidence            34556788999998732210  011111111    11233333333     5799999999999999633211   2345


Q ss_pred             ccCCCcEEEEEEccCCCEEEEecCCceEEeee
Q 022111          255 KDFKTPVWSVSWSLTGNLLAVADANNVTLWKE  286 (302)
Q Consensus       255 ~~~~~~v~~~~~spdg~~la~~~~d~i~~w~~  286 (302)
                      .+.+.+|.-|.-+.||+.|++....-+.|=+.
T Consensus       468 PgLG~~I~hVdvtadGKwil~Tc~tyLlLi~t  499 (644)
T KOG2395|consen  468 PGLGDAIKHVDVTADGKWILATCKTYLLLIDT  499 (644)
T ss_pred             cccCCceeeEEeeccCcEEEEecccEEEEEEE
Confidence            67788999999999999998887765555443

>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]

Probab=92.66  E-value=0.54  Score=46.39  Aligned_cols=104  Identities=18%  Similarity=0.242  Sum_probs=64.4

Q ss_pred             eeEEEeeCCCcEEEEEEecCccccccccccccCCCceeEEEeeCCCCCCccEEEEEecCCeEEEEEeccCCcceeeeeec
Q 022111          176 QKLASCGCDNTVKVWKMYNGIWKMDCFPALQMHSDWVRSVAWAPNLGLPKSTIASASQDGTVVIWTCAKEGEQWEGRVLK  255 (302)
Q Consensus       176 ~~l~s~~~D~~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~  255 (302)
                      ..++.|+.-|.+-..|+..+.   .....=....++|++++|+.++    ..++.|=.+|.|.+||+...+.   .....
T Consensus       100 ~~ivi~Ts~ghvl~~d~~~nL---~~~~~ne~v~~~Vtsvafn~dg----~~l~~G~~~G~V~v~D~~~~k~---l~~i~  169 (1206)
T KOG2079|consen  100 VPIVIGTSHGHVLLSDMTGNL---GPLHQNERVQGPVTSVAFNQDG----SLLLAGLGDGHVTVWDMHRAKI---LKVIT  169 (1206)
T ss_pred             eeEEEEcCchhhhhhhhhccc---chhhcCCccCCcceeeEecCCC----ceeccccCCCcEEEEEccCCcc---eeeee
Confidence            467888888888888887542   1111111235789999999885    7888999999999999976432   12334


Q ss_pred             cCCCcEEE---EEEccCCCEEEEecCCceEEeeecCCc
Q 022111          256 DFKTPVWS---VSWSLTGNLLAVADANNVTLWKEAVDG  290 (302)
Q Consensus       256 ~~~~~v~~---~~~spdg~~la~~~~d~i~~w~~~~~~  290 (302)
                      .+..+..+   +.+.-++..+.+++..+. +|+..-+.
T Consensus       170 e~~ap~t~vi~v~~t~~nS~llt~D~~Gs-f~~lv~nk  206 (1206)
T KOG2079|consen  170 EHGAPVTGVIFVGRTSQNSKLLTSDTGGS-FWKLVFNK  206 (1206)
T ss_pred             ecCCccceEEEEEEeCCCcEEEEccCCCc-eEEEEech
Confidence            44444333   333344555666644433 67654444

>PRK11138 outer membrane biogenesis protein BamB; Provisional

Probab=92.28  E-value=8.2  Score=34.67  Aligned_cols=94  Identities=11%  Similarity=0.084  Sum_probs=49.6

Q ss_pred             eeEEEeeCCCcEEEEEEecCc--cccccccccccCCCceeEEEeeCCCCCCccEEEEEecCCeEEEEEeccCCcceeeee
Q 022111          176 QKLASCGCDNTVKVWKMYNGI--WKMDCFPALQMHSDWVRSVAWAPNLGLPKSTIASASQDGTVVIWTCAKEGEQWEGRV  253 (302)
Q Consensus       176 ~~l~s~~~D~~v~iwd~~~~~--~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~l~s~s~D~~i~iwd~~~~~~~~~~~~  253 (302)
                      ..+..++.++.+..+|..++.  |....   +. +. ...+....      +..|..++.||.|.+.|..+....|...+
T Consensus       295 ~~vy~~~~~g~l~ald~~tG~~~W~~~~---~~-~~-~~~sp~v~------~g~l~v~~~~G~l~~ld~~tG~~~~~~~~  363 (394)
T PRK11138        295 GRIYLVDQNDRVYALDTRGGVELWSQSD---LL-HR-LLTAPVLY------NGYLVVGDSEGYLHWINREDGRFVAQQKV  363 (394)
T ss_pred             CEEEEEcCCCeEEEEECCCCcEEEcccc---cC-CC-cccCCEEE------CCEEEEEeCCCEEEEEECCCCCEEEEEEc
Confidence            567777789999999987763  22111   10 10 01111111      25688899999999999876433332222


Q ss_pred             eccCCCcEEE-EEEccCCCEEEEecCC-ceEEee
Q 022111          254 LKDFKTPVWS-VSWSLTGNLLAVADAN-NVTLWK  285 (302)
Q Consensus       254 ~~~~~~~v~~-~~~spdg~~la~~~~d-~i~~w~  285 (302)
                      .   ...+.+ -.+ .++ .|.+++.+ .+..++
T Consensus       364 ~---~~~~~s~P~~-~~~-~l~v~t~~G~l~~~~  392 (394)
T PRK11138        364 D---SSGFLSEPVV-ADD-KLLIQARDGTVYAIT  392 (394)
T ss_pred             C---CCcceeCCEE-ECC-EEEEEeCCceEEEEe
Confidence            1   112222 111 244 55556566 566654

>PHA02790 Kelch-like protein; Provisional

Probab=92.12  E-value=10  Score=35.28  Aligned_cols=104  Identities=7%  Similarity=0.041  Sum_probs=50.1

Q ss_pred             CCCEEEEeeCCC-----cEEEEeecCCCceEEEEecCcccCeEEEEeeCCCCCCEEEEEeCC--CeEEEEEcCCCCceeE
Q 022111           22 YGKRLATASSDS-----SIKIIGLSNSASQHLATLKGHRGPVWQVAWAHPKFGSILASCSYD--GQVIIWKEGNQNDWTQ   94 (302)
Q Consensus        22 ~~~~l~s~~~d~-----~v~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~s~D--~~i~iwd~~~~~~~~~   94 (302)
                      ++..++.||.++     ++..||........+..+.........+..    ++.+.+.|+.+  .++..||... +.|..
T Consensus       271 ~~~lyviGG~~~~~~~~~v~~Ydp~~~~W~~~~~m~~~r~~~~~v~~----~~~iYviGG~~~~~sve~ydp~~-n~W~~  345 (480)
T PHA02790        271 GEVVYLIGGWMNNEIHNNAIAVNYISNNWIPIPPMNSPRLYASGVPA----NNKLYVVGGLPNPTSVERWFHGD-AAWVN  345 (480)
T ss_pred             CCEEEEEcCCCCCCcCCeEEEEECCCCEEEECCCCCchhhcceEEEE----CCEEEEECCcCCCCceEEEECCC-CeEEE
Confidence            455667787653     466677655433333333221111112222    26777777754  3577788654 34554


Q ss_pred             EEEecCCCCCeeEEEecCCCCCcEEEEEecCC---cEEEEEec
Q 022111           95 AHTFNDHKSSVNSIAWAPHELGLSLACGSSDG---NISVFTAT  134 (302)
Q Consensus        95 ~~~~~~h~~~i~~l~~~pd~~~~~l~sg~~d~---~v~~~~~~  134 (302)
                      +..+.........+.+  +  +.+.+.|+.++   .+..||..
T Consensus       346 ~~~l~~~r~~~~~~~~--~--g~IYviGG~~~~~~~ve~ydp~  384 (480)
T PHA02790        346 MPSLLKPRCNPAVASI--N--NVIYVIGGHSETDTTTEYLLPN  384 (480)
T ss_pred             CCCCCCCCcccEEEEE--C--CEEEEecCcCCCCccEEEEeCC
Confidence            4333211111122222  2  45666666543   45667654

>PHA02790 Kelch-like protein; Provisional

Probab=92.09  E-value=6.4  Score=36.52  Aligned_cols=107  Identities=11%  Similarity=0.082  Sum_probs=51.3

Q ss_pred             cCCCEEEEeeCC--CcEEEEeecCCCceEEEEecCcccCeEEEEeeCCCCCCEEEEEeCCC---eEEEEEcCCCCceeEE
Q 022111           21 FYGKRLATASSD--SSIKIIGLSNSASQHLATLKGHRGPVWQVAWAHPKFGSILASCSYDG---QVIIWKEGNQNDWTQA   95 (302)
Q Consensus        21 ~~~~~l~s~~~d--~~v~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~s~D~---~i~iwd~~~~~~~~~~   95 (302)
                      .+++..+.||.+  ..+..|+........+..+...-... +++..   +|++.+.||.++   .+..||+++ +.|...
T Consensus       317 ~~~~iYviGG~~~~~sve~ydp~~n~W~~~~~l~~~r~~~-~~~~~---~g~IYviGG~~~~~~~ve~ydp~~-~~W~~~  391 (480)
T PHA02790        317 ANNKLYVVGGLPNPTSVERWFHGDAAWVNMPSLLKPRCNP-AVASI---NNVIYVIGGHSETDTTTEYLLPNH-DQWQFG  391 (480)
T ss_pred             ECCEEEEECCcCCCCceEEEECCCCeEEECCCCCCCCccc-EEEEE---CCEEEEecCcCCCCccEEEEeCCC-CEEEeC
Confidence            356777777754  34667775443333333332111111 22222   267778887653   467788765 346543


Q ss_pred             EEecCCCCCeeEEEecCCCCCcEEEEEecCCcEEEEEecCCCCee
Q 022111           96 HTFNDHKSSVNSIAWAPHELGLSLACGSSDGNISVFTATADGGWD  140 (302)
Q Consensus        96 ~~~~~h~~~i~~l~~~pd~~~~~l~sg~~d~~v~~~~~~~~~~~~  140 (302)
                      ............+.+  +  +.+.+.|   |.+..||..+ ..|.
T Consensus       392 ~~m~~~r~~~~~~~~--~--~~IYv~G---G~~e~ydp~~-~~W~  428 (480)
T PHA02790        392 PSTYYPHYKSCALVF--G--RRLFLVG---RNAEFYCESS-NTWT  428 (480)
T ss_pred             CCCCCccccceEEEE--C--CEEEEEC---CceEEecCCC-CcEe
Confidence            222211111122223  2  4455555   3467787653 3454

>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins

Probab=91.85  E-value=0.63  Score=27.15  Aligned_cols=33  Identities=27%  Similarity=0.326  Sum_probs=25.7

Q ss_pred             ceeEEEeeCCCCCCccEEEEEecCCeEEEEEecc
Q 022111          211 WVRSVAWAPNLGLPKSTIASASQDGTVVIWTCAK  244 (302)
Q Consensus       211 ~v~~v~~~p~~~~~~~~l~s~s~D~~i~iwd~~~  244 (302)
                      .|+++.|+|+... ...|+-.-.-+.+.|+|++.
T Consensus         2 AvR~~kFsP~~~~-~DLL~~~E~~g~vhi~D~R~   34 (43)
T PF10313_consen    2 AVRCCKFSPEPGG-NDLLAWAEHQGRVHIVDTRS   34 (43)
T ss_pred             CeEEEEeCCCCCc-ccEEEEEccCCeEEEEEccc
Confidence            5889999987522 25777777788999999985

It contains a characteristic DLL sequence motif.

>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation

Probab=91.80  E-value=7  Score=32.84  Aligned_cols=151  Identities=21%  Similarity=0.227  Sum_probs=76.4

Q ss_pred             CeeEEEecCCCCCcEEEEEe-cCCcEEEEEecCCCCeeeeeecccCCCCeEEEEeCCCCCCCceeecccCCCceeEEEee
Q 022111          104 SVNSIAWAPHELGLSLACGS-SDGNISVFTATADGGWDTTRIDQAHPVGVTSVSWAPAMAPGALVGLGLLDPVQKLASCG  182 (302)
Q Consensus       104 ~i~~l~~~pd~~~~~l~sg~-~d~~v~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~  182 (302)
                      .+.+.+++++  +..+|... .++.-.||-...++......    ....++...|++++              ...+...
T Consensus        25 ~~~s~AvS~d--g~~~A~v~~~~~~~~L~~~~~~~~~~~~~----~g~~l~~PS~d~~g--------------~~W~v~~   84 (253)
T PF10647_consen   25 DVTSPAVSPD--GSRVAAVSEGDGGRSLYVGPAGGPVRPVL----TGGSLTRPSWDPDG--------------WVWTVDD   84 (253)
T ss_pred             cccceEECCC--CCeEEEEEEcCCCCEEEEEcCCCcceeec----cCCccccccccCCC--------------CEEEEEc
Confidence            6788999998  44554443 34444455444333222111    11246677787753              3333333


Q ss_pred             CCCcEEEEE-EecCccccccccccccCCCceeEEEeeCCCCCCccEEEEEe---cCCeEEEEEeccCCcc--e-e---ee
Q 022111          183 CDNTVKVWK-MYNGIWKMDCFPALQMHSDWVRSVAWAPNLGLPKSTIASAS---QDGTVVIWTCAKEGEQ--W-E---GR  252 (302)
Q Consensus       183 ~D~~v~iwd-~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~l~s~s---~D~~i~iwd~~~~~~~--~-~---~~  252 (302)
                      .+...+++. ..++......+.... -...|.++.+|||+    ..+|-..   .++.|.+=-+......  . .   ..
T Consensus        85 ~~~~~~~~~~~~~g~~~~~~v~~~~-~~~~I~~l~vSpDG----~RvA~v~~~~~~~~v~va~V~r~~~g~~~~l~~~~~  159 (253)
T PF10647_consen   85 GSGGVRVVRDSASGTGEPVEVDWPG-LRGRITALRVSPDG----TRVAVVVEDGGGGRVYVAGVVRDGDGVPRRLTGPRR  159 (253)
T ss_pred             CCCceEEEEecCCCcceeEEecccc-cCCceEEEEECCCC----cEEEEEEecCCCCeEEEEEEEeCCCCCcceeccceE
Confidence            444455553 222211100011111 11179999999997    4444443   4566666554332111  0 0   01


Q ss_pred             eeccCCCcEEEEEEccCCCEEEEecCC
Q 022111          253 VLKDFKTPVWSVSWSLTGNLLAVADAN  279 (302)
Q Consensus       253 ~~~~~~~~v~~~~~spdg~~la~~~~d  279 (302)
                      +.......+.+++|.+++.+++.+...
T Consensus       160 ~~~~~~~~v~~v~W~~~~~L~V~~~~~  186 (253)
T PF10647_consen  160 VAPPLLSDVTDVAWSDDSTLVVLGRSA  186 (253)
T ss_pred             ecccccCcceeeeecCCCEEEEEeCCC
Confidence            111224578899999999888777554

It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.

>PRK11138 outer membrane biogenesis protein BamB; Provisional

Probab=91.78  E-value=9.4  Score=34.29  Aligned_cols=192  Identities=14%  Similarity=0.137  Sum_probs=90.5

Q ss_pred             CCEEEEeeCCCcEEEEeecCCCceEEEEecCcccCeEE-EEeeCCCCCCEEEEEeCCCeEEEEEcCCCCceeEEEEecCC
Q 022111           23 GKRLATASSDSSIKIIGLSNSASQHLATLKGHRGPVWQ-VAWAHPKFGSILASCSYDGQVIIWKEGNQNDWTQAHTFNDH  101 (302)
Q Consensus        23 ~~~l~s~~~d~~v~lw~~~~~~~~~~~~~~~h~~~v~~-v~~~~~~~~~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~h  101 (302)
                      +..++.++.++.++-+|..++.  .+-+.... +.+.+ ....    +.+++.+..++.+.-+|.+++..   +..+...
T Consensus       120 ~~~v~v~~~~g~l~ald~~tG~--~~W~~~~~-~~~~ssP~v~----~~~v~v~~~~g~l~ald~~tG~~---~W~~~~~  189 (394)
T PRK11138        120 GGKVYIGSEKGQVYALNAEDGE--VAWQTKVA-GEALSRPVVS----DGLVLVHTSNGMLQALNESDGAV---KWTVNLD  189 (394)
T ss_pred             CCEEEEEcCCCEEEEEECCCCC--CcccccCC-CceecCCEEE----CCEEEEECCCCEEEEEEccCCCE---eeeecCC
Confidence            3456667778888887765432  22222211 11211 1111    24566677888999999877642   2222211


Q ss_pred             CCCeeEE--EecCCCCCcEEEEEecCCcEEEEEecCCCC-eeeeeecccCC-CCe---EEEEeCCCCCCCceeecccCCC
Q 022111          102 KSSVNSI--AWAPHELGLSLACGSSDGNISVFTATADGG-WDTTRIDQAHP-VGV---TSVSWAPAMAPGALVGLGLLDP  174 (302)
Q Consensus       102 ~~~i~~l--~~~pd~~~~~l~sg~~d~~v~~~~~~~~~~-~~~~~~~~~h~-~~v---~~~~~~~~~~~~~~~~~~~~~~  174 (302)
                      . +...+  .-+|--.+..++.++.++.+..++..++.. |.. .+..... ..+   ..+.-+|.           .. 
T Consensus       190 ~-~~~~~~~~~sP~v~~~~v~~~~~~g~v~a~d~~~G~~~W~~-~~~~~~~~~~~~~~~~~~~sP~-----------v~-  255 (394)
T PRK11138        190 V-PSLTLRGESAPATAFGGAIVGGDNGRVSAVLMEQGQLIWQQ-RISQPTGATEIDRLVDVDTTPV-----------VV-  255 (394)
T ss_pred             C-CcccccCCCCCEEECCEEEEEcCCCEEEEEEccCChhhhee-ccccCCCccchhcccccCCCcE-----------EE-
Confidence            1 10000  001210012466677788887777654321 211 1100000 000   00000110           01 


Q ss_pred             ceeEEEeeCCCcEEEEEEecCccccccccccccCCCceeEEEeeCCCCCCccEEEEEecCCeEEEEEeccCCccee
Q 022111          175 VQKLASCGCDNTVKVWKMYNGIWKMDCFPALQMHSDWVRSVAWAPNLGLPKSTIASASQDGTVVIWTCAKEGEQWE  250 (302)
Q Consensus       175 ~~~l~s~~~D~~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~l~s~s~D~~i~iwd~~~~~~~~~  250 (302)
                      +..++.++.++.+..+|+.++....+.  .+..    ...+...      +..|..++.|+.+...|..+....|.
T Consensus       256 ~~~vy~~~~~g~l~ald~~tG~~~W~~--~~~~----~~~~~~~------~~~vy~~~~~g~l~ald~~tG~~~W~  319 (394)
T PRK11138        256 GGVVYALAYNGNLVALDLRSGQIVWKR--EYGS----VNDFAVD------GGRIYLVDQNDRVYALDTRGGVELWS  319 (394)
T ss_pred             CCEEEEEEcCCeEEEEECCCCCEEEee--cCCC----ccCcEEE------CCEEEEEcCCCeEEEEECCCCcEEEc
Confidence            245666777899999998877421110  1110    1111111      35677788899999999876544453

>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins

Probab=91.54  E-value=0.76  Score=26.82  Aligned_cols=32  Identities=25%  Similarity=0.333  Sum_probs=26.1

Q ss_pred             cCeEEEEeeCCCCC--CEEEEEeCCCeEEEEEcCC
Q 022111           56 GPVWQVAWAHPKFG--SILASCSYDGQVIIWKEGN   88 (302)
Q Consensus        56 ~~v~~v~~~~~~~~--~~l~s~s~D~~i~iwd~~~   88 (302)
                      +.|++++|+|.. +  ++|+-.-.-+.+.|+|+++
T Consensus         1 GAvR~~kFsP~~-~~~DLL~~~E~~g~vhi~D~R~   34 (43)
T PF10313_consen    1 GAVRCCKFSPEP-GGNDLLAWAEHQGRVHIVDTRS   34 (43)
T ss_pred             CCeEEEEeCCCC-CcccEEEEEccCCeEEEEEccc
Confidence            468999998643 4  7888888889999999874

It contains a characteristic DLL sequence motif.

>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]

Probab=91.09  E-value=12  Score=34.15  Aligned_cols=205  Identities=18%  Similarity=0.208  Sum_probs=95.7

Q ss_pred             CeEEEEeeCCCCCCEEEEE---eCC-CeEEEEEcCCCCceeEEEEecCCCCCeeEEEecCCCCCcEEEEEecCCcEEEEE
Q 022111           57 PVWQVAWAHPKFGSILASC---SYD-GQVIIWKEGNQNDWTQAHTFNDHKSSVNSIAWAPHELGLSLACGSSDGNISVFT  132 (302)
Q Consensus        57 ~v~~v~~~~~~~~~~l~s~---s~D-~~i~iwd~~~~~~~~~~~~~~~h~~~i~~l~~~pd~~~~~l~sg~~d~~v~~~~  132 (302)
                      .+..-+|+++  +..++-.   ... ..+.+++++.+.. ..+..+.+++   ..-+|+||. .+++.+...|+...+|-
T Consensus       194 ~~~~p~ws~~--~~~~~y~~f~~~~~~~i~~~~l~~g~~-~~i~~~~g~~---~~P~fspDG-~~l~f~~~rdg~~~iy~  266 (425)
T COG0823         194 LILTPAWSPD--GKKLAYVSFELGGCPRIYYLDLNTGKR-PVILNFNGNN---GAPAFSPDG-SKLAFSSSRDGSPDIYL  266 (425)
T ss_pred             ceeccccCcC--CCceEEEEEecCCCceEEEEeccCCcc-ceeeccCCcc---CCccCCCCC-CEEEEEECCCCCccEEE
Confidence            3444566654  4443333   222 3578888876543 2233344443   455699994 24455666677766664


Q ss_pred             ecCCCCeeeeeecccCCCCeEEEEeCCCCCCCceeecccCCCceeEEEeeCCCcEEEEEEecCccccccccccccCCCce
Q 022111          133 ATADGGWDTTRIDQAHPVGVTSVSWAPAMAPGALVGLGLLDPVQKLASCGCDNTVKVWKMYNGIWKMDCFPALQMHSDWV  212 (302)
Q Consensus       133 ~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~D~~v~iwd~~~~~~~~~~~~~~~~h~~~v  212 (302)
                      ..-.+.. ...+... ...-+.-.|+|++             ...+++....|.-.||-+.-...... ..++.+-... 
T Consensus       267 ~dl~~~~-~~~Lt~~-~gi~~~Ps~spdG-------------~~ivf~Sdr~G~p~I~~~~~~g~~~~-riT~~~~~~~-  329 (425)
T COG0823         267 MDLDGKN-LPRLTNG-FGINTSPSWSPDG-------------SKIVFTSDRGGRPQIYLYDLEGSQVT-RLTFSGGGNS-  329 (425)
T ss_pred             EcCCCCc-ceecccC-CccccCccCCCCC-------------CEEEEEeCCCCCcceEEECCCCCcee-EeeccCCCCc-
Confidence            4322221 2222211 1112356677765             24445555566656655432211111 1122222222 


Q ss_pred             eEEEeeCCCCCCccEEEEEec-CCe--EEEEEeccCCcceeeeeeccCCCcEEEEEEccCCCEEEEecCC--ceEEeeec
Q 022111          213 RSVAWAPNLGLPKSTIASASQ-DGT--VVIWTCAKEGEQWEGRVLKDFKTPVWSVSWSLTGNLLAVADAN--NVTLWKEA  287 (302)
Q Consensus       213 ~~v~~~p~~~~~~~~l~s~s~-D~~--i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~la~~~~d--~i~~w~~~  287 (302)
                       .-.|+||+    +.|+..+. +|.  |.+.|+..... +  +.+ ........-+|.|+|+.+...+..  .=.++-..
T Consensus       330 -~p~~SpdG----~~i~~~~~~~g~~~i~~~~~~~~~~-~--~~l-t~~~~~e~ps~~~ng~~i~~~s~~~~~~~l~~~s  400 (425)
T COG0823         330 -NPVWSPDG----DKIVFESSSGGQWDIDKNDLASGGK-I--RIL-TSTYLNESPSWAPNGRMIMFSSGQGGGSVLSLVS  400 (425)
T ss_pred             -CccCCCCC----CEEEEEeccCCceeeEEeccCCCCc-E--EEc-cccccCCCCCcCCCCceEEEeccCCCCceEEEee
Confidence             56788886    55665553 344  33333332211 1  111 111122344677777777655443  23444444


Q ss_pred             CCceEEE
Q 022111          288 VDGEWQQ  294 (302)
Q Consensus       288 ~~~~~~~  294 (302)
                      ..+++..
T Consensus       401 ~~g~~~~  407 (425)
T COG0823         401 LDGRVSR  407 (425)
T ss_pred             ccceeEE
Confidence            4555443

>KOG3522 consensus Predicted guanine nucleotide exchange factor [Signal transduction mechanisms]

Probab=90.96  E-value=0.92  Score=43.69  Aligned_cols=73  Identities=21%  Similarity=0.216  Sum_probs=55.7

Q ss_pred             CCCceeEEEeeCCCCCCccEEEEEecCCeEEEEEeccCCcceeeeeeccCCCcEEEEEEccCCCEEEEecCCceEEeeec
Q 022111          208 HSDWVRSVAWAPNLGLPKSTIASASQDGTVVIWTCAKEGEQWEGRVLKDFKTPVWSVSWSLTGNLLAVADANNVTLWKEA  287 (302)
Q Consensus       208 h~~~v~~v~~~p~~~~~~~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~la~~~~d~i~~w~~~  287 (302)
                      ...+|++.++..|       ++-++.||.+.++...+....+..+.+.++...|+.+.++-.|=+++.++++.++++...
T Consensus       625 g~lPvrsla~~ed-------~~was~gG~V~vi~~tt~~~~~~leahqee~~~Vthm~~~~~gVwvafasG~~~rlfhte  697 (925)
T KOG3522|consen  625 GSLPVRSLAFQED-------FVWASEGGCVHVIPSTTFIRSWDLEAHQEEAHSVTHMLYLDNGVWVAFASGDEERLFHTE  697 (925)
T ss_pred             CCccccchhhhhc-------eeeeecCCceEEEechhccccchhHHHHhhcceEEEEEeeCCceEEEEcCCCEEEEeccc
Confidence            3456888887755       778889999999988765444544455566678999999888888899988888888543

>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation

Probab=90.89  E-value=8.8  Score=32.26  Aligned_cols=141  Identities=18%  Similarity=0.246  Sum_probs=73.6

Q ss_pred             ceeEEEEccCCCEEEEee-CCCcEEEEeecCCCceEEEEecCcccCeEEEEeeCCCCCCEEEEEeCCCeEEEEE-cCCCC
Q 022111           13 TVHDVAMDFYGKRLATAS-SDSSIKIIGLSNSASQHLATLKGHRGPVWQVAWAHPKFGSILASCSYDGQVIIWK-EGNQN   90 (302)
Q Consensus        13 ~v~~~~~s~~~~~l~s~~-~d~~v~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~s~D~~i~iwd-~~~~~   90 (302)
                      .+.+.+++++++.+|... .++.-.||-..... .....+.+.  .+..-+|.++  +.+.+....+...+++. ..+..
T Consensus        25 ~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~~~~-~~~~~~~g~--~l~~PS~d~~--g~~W~v~~~~~~~~~~~~~~~g~   99 (253)
T PF10647_consen   25 DVTSPAVSPDGSRVAAVSEGDGGRSLYVGPAGG-PVRPVLTGG--SLTRPSWDPD--GWVWTVDDGSGGVRVVRDSASGT   99 (253)
T ss_pred             cccceEECCCCCeEEEEEEcCCCCEEEEEcCCC-cceeeccCC--ccccccccCC--CCEEEEEcCCCceEEEEecCCCc
Confidence            577889999998776655 23333444332221 111122332  5666778653  66665555666666663 22221


Q ss_pred             ceeEEEE-ecCCCCCeeEEEecCCCCCcEEEEEe---cCCcEEEEEecCC--C-Ceee---eeecccCCCCeEEEEeCCC
Q 022111           91 DWTQAHT-FNDHKSSVNSIAWAPHELGLSLACGS---SDGNISVFTATAD--G-GWDT---TRIDQAHPVGVTSVSWAPA  160 (302)
Q Consensus        91 ~~~~~~~-~~~h~~~i~~l~~~pd~~~~~l~sg~---~d~~v~~~~~~~~--~-~~~~---~~~~~~h~~~v~~~~~~~~  160 (302)
                       ...... ...-...|..+++|||  |.++|.-.   .++.|.+--+..+  + ...+   ..+.......++.+.|.++
T Consensus       100 -~~~~~v~~~~~~~~I~~l~vSpD--G~RvA~v~~~~~~~~v~va~V~r~~~g~~~~l~~~~~~~~~~~~~v~~v~W~~~  176 (253)
T PF10647_consen  100 -GEPVEVDWPGLRGRITALRVSPD--GTRVAVVVEDGGGGRVYVAGVVRDGDGVPRRLTGPRRVAPPLLSDVTDVAWSDD  176 (253)
T ss_pred             -ceeEEecccccCCceEEEEECCC--CcEEEEEEecCCCCeEEEEEEEeCCCCCcceeccceEecccccCcceeeeecCC
Confidence             112211 1111128999999999  66666554   3567776554322  1 1111   1111122356889999875


Q ss_pred             C
Q 022111          161 M  161 (302)
Q Consensus       161 ~  161 (302)
                      .
T Consensus       177 ~  177 (253)
T PF10647_consen  177 S  177 (253)
T ss_pred             C
Confidence            3

It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.

>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=90.81  E-value=11  Score=33.31  Aligned_cols=104  Identities=16%  Similarity=0.210  Sum_probs=56.8

Q ss_pred             ccCCCEEEEe---------eCCCcEEEEeecCCCceEEEEecCcccCeEEEEeeCCCCCCEEEEEeCCCeEEEEEcCCCC
Q 022111           20 DFYGKRLATA---------SSDSSIKIIGLSNSASQHLATLKGHRGPVWQVAWAHPKFGSILASCSYDGQVIIWKEGNQN   90 (302)
Q Consensus        20 s~~~~~l~s~---------~~d~~v~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~s~D~~i~iwd~~~~~   90 (302)
                      |||+++++..         +..+.+.|||+.+...   ..+......+....|+|+  |+.+|-+. ++.|-+.+..++.
T Consensus         1 S~d~~~~l~~~~~~~~~r~s~~~~y~i~d~~~~~~---~~l~~~~~~~~~~~~sP~--g~~~~~v~-~~nly~~~~~~~~   74 (353)
T PF00930_consen    1 SPDGKFVLFATNYTKQWRHSFKGDYYIYDIETGEI---TPLTPPPPKLQDAKWSPD--GKYIAFVR-DNNLYLRDLATGQ   74 (353)
T ss_dssp             -TTSSEEEEEEEEEEESSSEEEEEEEEEETTTTEE---EESS-EETTBSEEEE-SS--STEEEEEE-TTEEEEESSTTSE
T ss_pred             CCCCCeEEEEECcEEeeeeccceeEEEEecCCCce---EECcCCccccccceeecC--CCeeEEEe-cCceEEEECCCCC
Confidence            5777777653         2345688888876432   333333567788999875  78887765 5678888765442


Q ss_pred             ceeEEEEecC-------C---------CCCeeEEEecCCCCCcEEEEEe-cCCcEEEEEe
Q 022111           91 DWTQAHTFND-------H---------KSSVNSIAWAPHELGLSLACGS-SDGNISVFTA  133 (302)
Q Consensus        91 ~~~~~~~~~~-------h---------~~~i~~l~~~pd~~~~~l~sg~-~d~~v~~~~~  133 (302)
                      . ..+ +..+       -         -+.-..+-||||  +..||... ++..|+.+.+
T Consensus        75 ~-~~l-T~dg~~~i~nG~~dwvyeEEv~~~~~~~~WSpd--~~~la~~~~d~~~v~~~~~  130 (353)
T PF00930_consen   75 E-TQL-TTDGEPGIYNGVPDWVYEEEVFDRRSAVWWSPD--SKYLAFLRFDEREVPEYPL  130 (353)
T ss_dssp             E-EES-ES--TTTEEESB--HHHHHHTSSSSBSEEE-TT--SSEEEEEEEE-TTS-EEEE
T ss_pred             e-EEe-ccccceeEEcCccceeccccccccccceEECCC--CCEEEEEEECCcCCceEEe
Confidence            1 111 1111       0         123367889999  55666554 4455655543

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....

>PHA03098 kelch-like protein; Provisional

Probab=90.63  E-value=9.6  Score=35.82  Aligned_cols=69  Identities=12%  Similarity=0.003  Sum_probs=34.5

Q ss_pred             CCCEEEEeeCC-----CcEEEEeecCCCceEEEEecCcccCeEEEEeeCCCCCCEEEEEeCC------CeEEEEEcCCCC
Q 022111           22 YGKRLATASSD-----SSIKIIGLSNSASQHLATLKGHRGPVWQVAWAHPKFGSILASCSYD------GQVIIWKEGNQN   90 (302)
Q Consensus        22 ~~~~l~s~~~d-----~~v~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~s~D------~~i~iwd~~~~~   90 (302)
                      +++..+.||.+     ..+..||...........+...... .+++..   ++++++.||.+      ..+..||+.+ +
T Consensus       342 ~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~lp~~r~~-~~~~~~---~~~iYv~GG~~~~~~~~~~v~~yd~~t-~  416 (534)
T PHA03098        342 NNRIYVIGGIYNSISLNTVESWKPGESKWREEPPLIFPRYN-PCVVNV---NNLIYVIGGISKNDELLKTVECFSLNT-N  416 (534)
T ss_pred             CCEEEEEeCCCCCEecceEEEEcCCCCceeeCCCcCcCCcc-ceEEEE---CCEEEEECCcCCCCcccceEEEEeCCC-C
Confidence            46677777765     2366677655443333222111101 112221   25777777732      3577888765 3


Q ss_pred             ceeEE
Q 022111           91 DWTQA   95 (302)
Q Consensus        91 ~~~~~   95 (302)
                      .|...
T Consensus       417 ~W~~~  421 (534)
T PHA03098        417 KWSKG  421 (534)
T ss_pred             eeeec
Confidence            45543

>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=90.61  E-value=2.8  Score=42.02  Aligned_cols=152  Identities=15%  Similarity=0.095  Sum_probs=83.9

Q ss_pred             CeeEEEecCCCCCcEEEEEecCCcEEEEEecCCCCee--------eeeecccCCCCeEEEEeCCCCCCCceeecccCCCc
Q 022111          104 SVNSIAWAPHELGLSLACGSSDGNISVFTATADGGWD--------TTRIDQAHPVGVTSVSWAPAMAPGALVGLGLLDPV  175 (302)
Q Consensus       104 ~i~~l~~~pd~~~~~l~sg~~d~~v~~~~~~~~~~~~--------~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~  175 (302)
                      +|..+...+|..-..+...+.+-.|..||+++-....        .............++.|+|...             
T Consensus       102 pi~~~v~~~D~t~s~v~~tsng~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp-------------  168 (1405)
T KOG3630|consen  102 PIVIFVCFHDATDSVVVSTSNGEAVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVP-------------  168 (1405)
T ss_pred             cceEEEeccCCceEEEEEecCCceEEEEehHhhhhhhhhhccccccccchhccccccccccccCCcc-------------
Confidence            4555555666322234444445578889986421111        0111111122356778888542             


Q ss_pred             eeEEEeeCCCcEEEEEEecCccccccccccccCCCceeEEEeeCCCCCCccEEEEEecCCeEEEEEeccCCcceeeeeec
Q 022111          176 QKLASCGCDNTVKVWKMYNGIWKMDCFPALQMHSDWVRSVAWAPNLGLPKSTIASASQDGTVVIWTCAKEGEQWEGRVLK  255 (302)
Q Consensus       176 ~~l~s~~~D~~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~  255 (302)
                      ...+.+..|+.|++..+......   ... -.....++|++|+|.|    .+++.|-..|++.-|...-+-.........
T Consensus       169 ~n~av~l~dlsl~V~~~~~~~~~---v~s-~p~t~~~Tav~WSprG----KQl~iG~nnGt~vQy~P~leik~~ip~Pp~  240 (1405)
T KOG3630|consen  169 LNSAVDLSDLSLRVKSTKQLAQN---VTS-FPVTNSQTAVLWSPRG----KQLFIGRNNGTEVQYEPSLEIKSEIPEPPV  240 (1405)
T ss_pred             chhhhhccccchhhhhhhhhhhh---hcc-cCcccceeeEEecccc----ceeeEecCCCeEEEeecccceeecccCCCc
Confidence            34677778888888776532111   111 1234557999999985    789999999999888654220000000001


Q ss_pred             cCCCcEEEEEEccCCCEEEEe
Q 022111          256 DFKTPVWSVSWSLTGNLLAVA  276 (302)
Q Consensus       256 ~~~~~v~~~~~spdg~~la~~  276 (302)
                      .....|.+|.|-....+|++-
T Consensus       241 ~e~yrvl~v~Wl~t~eflvvy  261 (1405)
T KOG3630|consen  241 EENYRVLSVTWLSTQEFLVVY  261 (1405)
T ss_pred             CCCcceeEEEEecceeEEEEe
Confidence            113468889997766666554

>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin

Probab=89.68  E-value=2.5  Score=34.74  Aligned_cols=71  Identities=17%  Similarity=0.246  Sum_probs=49.5

Q ss_pred             ccEEEEEecCCeEEEEEeccCCcceee----eeec-------cCCCcEEEEEEccCCCEEEEecCCceEEeeecCCceEE
Q 022111          225 KSTIASASQDGTVVIWTCAKEGEQWEG----RVLK-------DFKTPVWSVSWSLTGNLLAVADANNVTLWKEAVDGEWQ  293 (302)
Q Consensus       225 ~~~l~s~s~D~~i~iwd~~~~~~~~~~----~~~~-------~~~~~v~~~~~spdg~~la~~~~d~i~~w~~~~~~~~~  293 (302)
                      +.++++.+.+|.+++||+...+.....    .++.       .....|.++..+.+|.-|++-+......|+.. .+.|.
T Consensus        22 ~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~lsng~~y~y~~~-L~~W~  100 (219)
T PF07569_consen   22 GSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVTLSNGDSYSYSPD-LGCWI  100 (219)
T ss_pred             CCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCCEEEEEeCCCEEEeccc-cceeE
Confidence            367999999999999999875322211    0111       23356888999999988777655578888853 67787


Q ss_pred             Eee
Q 022111          294 QVS  296 (302)
Q Consensus       294 ~~~  296 (302)
                      ++.
T Consensus       101 ~vs  103 (219)
T PF07569_consen  101 RVS  103 (219)
T ss_pred             Eec
Confidence            754

These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus

>PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast [])

Probab=89.57  E-value=4  Score=32.07  Aligned_cols=39  Identities=41%  Similarity=0.697  Sum_probs=29.7

Q ss_pred             cEEEEEEccCC------CEEEEecCC-ceEEeeecC--CceEEEeeec
Q 022111          260 PVWSVSWSLTG------NLLAVADAN-NVTLWKEAV--DGEWQQVSVV  298 (302)
Q Consensus       260 ~v~~~~~spdg------~~la~~~~d-~i~~w~~~~--~~~~~~~~~~  298 (302)
                      .+.+++|||.|      .+||+-..+ .|.||....  -+.|.+...+
T Consensus        87 ~vv~~aWSP~Gl~~~~rClLavLTs~~~l~l~~~~~~~~~~W~~v~dv  134 (173)
T PF12657_consen   87 QVVSAAWSPSGLGPNGRCLLAVLTSNGRLSLYGPPGNPQGEWNRVADV  134 (173)
T ss_pred             cEEEEEECCCCCCCCCceEEEEEcCCCeEEEEecCCCccccEeeeeeh
Confidence            57899999965      577777777 799998755  5778876554

The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 [].

>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]

Probab=89.41  E-value=1.4  Score=43.08  Aligned_cols=183  Identities=16%  Similarity=0.184  Sum_probs=96.0

Q ss_pred             ecCcccCeEEEEeeCCCCCCEEEEEeCCCeEEEEEcCC--CC--ceeEEEEecCCCCCeeEEEecCCCC-CcEEEEEecC
Q 022111           51 LKGHRGPVWQVAWAHPKFGSILASCSYDGQVIIWKEGN--QN--DWTQAHTFNDHKSSVNSIAWAPHEL-GLSLACGSSD  125 (302)
Q Consensus        51 ~~~h~~~v~~v~~~~~~~~~~l~s~s~D~~i~iwd~~~--~~--~~~~~~~~~~h~~~i~~l~~~pd~~-~~~l~sg~~d  125 (302)
                      ++|-.+.|-.++|.+-+..+..   -.=|.+.+||+.-  ++  .--.++........+.-+.|+|-.. ..++..+-.+
T Consensus       128 ~kgf~G~v~dl~fah~~~pk~~---~~vg~lfVy~vd~l~G~iq~~l~v~~~~p~gs~~~~V~wcp~~~~~~~ic~~~~~  204 (1283)
T KOG1916|consen  128 AKGFPGGVGDLQFAHTKCPKGR---RLVGELFVYDVDVLQGEIQPQLEVTPITPYGSDPQLVSWCPIAVNKVYICYGLKG  204 (1283)
T ss_pred             HhcCCCCcccccccccCChHHH---HHhhhhheeehHhhccccccceEEeecCcCCCCcceeeecccccccceeeeccCC
Confidence            3456677888888654322222   2235678898632  11  0012222233334446667776421 2356677777


Q ss_pred             CcEEEEEecCCCCeeeeeecccCCCCeEEEEeCCCCCCCceeecccCCCceeEEEeeCCCcEEEEEEe-cCccccccccc
Q 022111          126 GNISVFTATADGGWDTTRIDQAHPVGVTSVSWAPAMAPGALVGLGLLDPVQKLASCGCDNTVKVWKMY-NGIWKMDCFPA  204 (302)
Q Consensus       126 ~~v~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~D~~v~iwd~~-~~~~~~~~~~~  204 (302)
                      +.+++-...... .  ..+. +|...+..+++...+   -+.--.++++|+.||....||.+++|.+. ++.....|+..
T Consensus       205 ~~i~lL~~~ra~-~--~l~r-sHs~~~~d~a~~~~g---~~~l~~lSpDGtv~a~a~~dG~v~f~Qiyi~g~~~~rclhe  277 (1283)
T KOG1916|consen  205 GEIRLLNINRAL-R--SLFR-SHSQRVTDMAFFAEG---VLKLASLSPDGTVFAWAISDGSVGFYQIYITGKIVHRCLHE  277 (1283)
T ss_pred             CceeEeeechHH-H--HHHH-hcCCCcccHHHHhhc---hhhheeeCCCCcEEEEeecCCccceeeeeeeccccHhhhhc
Confidence            888875433211 1  1222 476665555443221   11111245678999999999999999874 33333456666


Q ss_pred             cccCC-CceeEEEeeCCCCC--C---ccEEEEEe-cCCeEEEEEec
Q 022111          205 LQMHS-DWVRSVAWAPNLGL--P---KSTIASAS-QDGTVVIWTCA  243 (302)
Q Consensus       205 ~~~h~-~~v~~v~~~p~~~~--~---~~~l~s~s-~D~~i~iwd~~  243 (302)
                      .+.|. .+--|.-|+.+...  +   -.++++++ .++.+++|...
T Consensus       278 wkphd~~p~vC~lc~~~~~~~v~i~~w~~~Itttd~nre~k~w~~a  323 (1283)
T KOG1916|consen  278 WKPHDKHPRVCWLCHKQEILVVSIGKWVLRITTTDVNREEKFWAEA  323 (1283)
T ss_pred             cCCCCCCCceeeeeccccccCCccceeEEEEecccCCcceeEeecc
Confidence            66676 33333333322110  0   12345554 46678888754

>PF15390 DUF4613: Domain of unknown function (DUF4613)

Probab=89.20  E-value=20  Score=33.77  Aligned_cols=156  Identities=15%  Similarity=0.238  Sum_probs=79.3

Q ss_pred             ccCeEEEEeeCCCCCCEEE-EEe--CCCeEEEEEcCCCCceeEEEEecCCCCCeeEEEecCCCC--CcEEEEEecCCcEE
Q 022111           55 RGPVWQVAWAHPKFGSILA-SCS--YDGQVIIWKEGNQNDWTQAHTFNDHKSSVNSIAWAPHEL--GLSLACGSSDGNIS  129 (302)
Q Consensus        55 ~~~v~~v~~~~~~~~~~l~-s~s--~D~~i~iwd~~~~~~~~~~~~~~~h~~~i~~l~~~pd~~--~~~l~sg~~d~~v~  129 (302)
                      -.+|..++|-   ||+.++ |.-  .+|.+++=|.      .-+.    .-+.|..+.|.|-..  .-.|.+.--.+.|.
T Consensus        19 iHPvhGlaWT---DGkqVvLT~L~l~~gE~kfGds------~viG----qFEhV~GlsW~P~~~~~~paLLAVQHkkhVt   85 (671)
T PF15390_consen   19 IHPVHGLAWT---DGKQVVLTDLQLHNGEPKFGDS------KVIG----QFEHVHGLSWAPPCTADTPALLAVQHKKHVT   85 (671)
T ss_pred             hccccceEec---CCCEEEEEeeeeeCCccccCCc------cEee----ccceeeeeeecCcccCCCCceEEEeccceEE
Confidence            3468889994   477644 332  2333333211      1222    334589999988521  11466667789999


Q ss_pred             EEEecCCC----Ceeee---eecccCCCCeEEEEeCCCCCCCceeecccCCCceeEEEeeCCCcEEEEEEecCccccccc
Q 022111          130 VFTATADG----GWDTT---RIDQAHPVGVTSVSWAPAMAPGALVGLGLLDPVQKLASCGCDNTVKVWKMYNGIWKMDCF  202 (302)
Q Consensus       130 ~~~~~~~~----~~~~~---~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~D~~v~iwd~~~~~~~~~~~  202 (302)
                      +|.+....    ++...   ++....+.--..+.|.|..              ..|+.=.....-.+++++.....++  
T Consensus        86 VWqL~~s~~e~~K~l~sQtcEi~e~~pvLpQGCVWHPk~--------------~iL~VLT~~dvSV~~sV~~d~srVk--  149 (671)
T PF15390_consen   86 VWQLCPSTTERNKLLMSQTCEIREPFPVLPQGCVWHPKK--------------AILTVLTARDVSVLPSVHCDSSRVK--  149 (671)
T ss_pred             EEEeccCccccccceeeeeeeccCCcccCCCcccccCCC--------------ceEEEEecCceeEeeeeeeCCceEE--
Confidence            99886321    22211   1111111112456788853              2222222222223344432211111  


Q ss_pred             cccccCCCceeEEEeeCCCCCCccEEEEEecCCeEEEEEec
Q 022111          203 PALQMHSDWVRSVAWAPNLGLPKSTIASASQDGTVVIWTCA  243 (302)
Q Consensus       203 ~~~~~h~~~v~~v~~~p~~~~~~~~l~s~s~D~~i~iwd~~  243 (302)
                      ..+ .-.+.|.|.+|.+||   .+.+++.+..=.-+|||-.
T Consensus       150 aDi-~~~G~IhCACWT~DG---~RLVVAvGSsLHSyiWd~~  186 (671)
T PF15390_consen  150 ADI-KTSGLIHCACWTKDG---QRLVVAVGSSLHSYIWDSA  186 (671)
T ss_pred             Eec-cCCceEEEEEecCcC---CEEEEEeCCeEEEEEecCc
Confidence            111 235669999999997   2455555555567889853

>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase

Probab=89.19  E-value=12  Score=31.44  Aligned_cols=148  Identities=19%  Similarity=0.222  Sum_probs=78.8

Q ss_pred             CCcEEEEEecCCcEEEEEecCCCCeeeeeecccCCCCeEEEEeCCCCCCCceeecccCCCceeEEEeeCCCcEEEEEEec
Q 022111          115 LGLSLACGSSDGNISVFTATADGGWDTTRIDQAHPVGVTSVSWAPAMAPGALVGLGLLDPVQKLASCGCDNTVKVWKMYN  194 (302)
Q Consensus       115 ~~~~l~sg~~d~~v~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~D~~v~iwd~~~  194 (302)
                      .+..|+.|..+| +.+|+.......  ...  .+...|..+...|.-              +.|+.- .|+.++++++..
T Consensus         6 ~~~~L~vGt~~G-l~~~~~~~~~~~--~~i--~~~~~I~ql~vl~~~--------------~~llvL-sd~~l~~~~L~~   65 (275)
T PF00780_consen    6 WGDRLLVGTEDG-LYVYDLSDPSKP--TRI--LKLSSITQLSVLPEL--------------NLLLVL-SDGQLYVYDLDS   65 (275)
T ss_pred             CCCEEEEEECCC-EEEEEecCCccc--eeE--eecceEEEEEEeccc--------------CEEEEE-cCCccEEEEchh
Confidence            356899998888 888887322111  111  122337777665532              233333 359999999865


Q ss_pred             Ccccccccc----------ccccCCCceeEEE-eeCCCCCCccEEEEEecCCeEEEEEeccCCcceeeeeec--cCCCcE
Q 022111          195 GIWKMDCFP----------ALQMHSDWVRSVA-WAPNLGLPKSTIASASQDGTVVIWTCAKEGEQWEGRVLK--DFKTPV  261 (302)
Q Consensus       195 ~~~~~~~~~----------~~~~h~~~v~~v~-~~p~~~~~~~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~--~~~~~v  261 (302)
                      -........          ........+...+ -...   .+...+.....+.|.+|.......... ...+  .....+
T Consensus        66 l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~f~~~~~~---~~~~~L~va~kk~i~i~~~~~~~~~f~-~~~ke~~lp~~~  141 (275)
T PF00780_consen   66 LEPVSTSAPLAFPKSRSLPTKLPETKGVSFFAVNGGH---EGSRRLCVAVKKKILIYEWNDPRNSFS-KLLKEISLPDPP  141 (275)
T ss_pred             hccccccccccccccccccccccccCCeeEEeecccc---ccceEEEEEECCEEEEEEEECCccccc-ceeEEEEcCCCc
Confidence            321110000          0001112233333 1111   134455566667999999876321110 1112  234678


Q ss_pred             EEEEEccCCCEEEEecCCceEEeeecC
Q 022111          262 WSVSWSLTGNLLAVADANNVTLWKEAV  288 (302)
Q Consensus       262 ~~~~~spdg~~la~~~~d~i~~w~~~~  288 (302)
                      .+++|.  ++.|++|.++...+.+...
T Consensus       142 ~~i~~~--~~~i~v~~~~~f~~idl~~  166 (275)
T PF00780_consen  142 SSIAFL--GNKICVGTSKGFYLIDLNT  166 (275)
T ss_pred             EEEEEe--CCEEEEEeCCceEEEecCC
Confidence            899998  5678888777788888763

These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity

>KOG2377 consensus Uncharacterized conserved protein [Function unknown]

Probab=87.96  E-value=5.1  Score=36.27  Aligned_cols=114  Identities=12%  Similarity=0.215  Sum_probs=70.1

Q ss_pred             cccceeEEEEccCCCEEEEeeCCCcEEEEeecCCCce--EEEEecCcccCeEEEEeeCCCCCCEEEEEeCCCeEEEEEcC
Q 022111           10 HEDTVHDVAMDFYGKRLATASSDSSIKIIGLSNSASQ--HLATLKGHRGPVWQVAWAHPKFGSILASCSYDGQVIIWKEG   87 (302)
Q Consensus        10 h~~~v~~~~~s~~~~~l~s~~~d~~v~lw~~~~~~~~--~~~~~~~h~~~v~~v~~~~~~~~~~l~s~s~D~~i~iwd~~   87 (302)
                      .+++|.++.||+|++.||.-=.|.+|..++......+  ...+.+..+..|...+|++   +.-+|..+..| +-+|-..
T Consensus        65 d~G~I~SIkFSlDnkilAVQR~~~~v~f~nf~~d~~~l~~~~~ck~k~~~IlGF~W~~---s~e~A~i~~~G-~e~y~v~  140 (657)
T KOG2377|consen   65 DKGEIKSIKFSLDNKILAVQRTSKTVDFCNFIPDNSQLEYTQECKTKNANILGFCWTS---STEIAFITDQG-IEFYQVL  140 (657)
T ss_pred             CCCceeEEEeccCcceEEEEecCceEEEEecCCCchhhHHHHHhccCcceeEEEEEec---CeeEEEEecCC-eEEEEEc
Confidence            4568999999999999999999999999988432211  1223334455688889975   34455555443 5566442


Q ss_pred             CCCceeEEEEecCCCCCeeEEEecCCCCCcEEEEEecCCcEE
Q 022111           88 NQNDWTQAHTFNDHKSSVNSIAWAPHELGLSLACGSSDGNIS  129 (302)
Q Consensus        88 ~~~~~~~~~~~~~h~~~i~~l~~~pd~~~~~l~sg~~d~~v~  129 (302)
                      ...+  .+...+.|+..|+=..|+|+..-.+|+++-..+++.
T Consensus       141 pekr--slRlVks~~~nvnWy~yc~et~v~LL~t~~~~n~ln  180 (657)
T KOG2377|consen  141 PEKR--SLRLVKSHNLNVNWYMYCPETAVILLSTTVLENVLN  180 (657)
T ss_pred             hhhh--hhhhhhhcccCccEEEEccccceEeeeccccccccc
Confidence            2211  222233477888888899875322344442444433

>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea

Probab=87.59  E-value=9.7  Score=34.50  Aligned_cols=103  Identities=10%  Similarity=0.214  Sum_probs=50.5

Q ss_pred             CCCcEEEEeecCCCceEEEEe--cCcccCeEEEEeeCCCCCCE-EEEEeCCCeEEEEEcCCCCceeEEEEecCC------
Q 022111           31 SDSSIKIIGLSNSASQHLATL--KGHRGPVWQVAWAHPKFGSI-LASCSYDGQVIIWKEGNQNDWTQAHTFNDH------  101 (302)
Q Consensus        31 ~d~~v~lw~~~~~~~~~~~~~--~~h~~~v~~v~~~~~~~~~~-l~s~s~D~~i~iwd~~~~~~~~~~~~~~~h------  101 (302)
                      ...++.+||+...  +.++++  ........-|+|.++....+ ++.|.-..+|-.|--.....|...+.+.--      
T Consensus       220 yG~~l~vWD~~~r--~~~Q~idLg~~g~~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~W~a~kVi~ip~~~v~~  297 (461)
T PF05694_consen  220 YGHSLHVWDWSTR--KLLQTIDLGEEGQMPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGEWAAEKVIDIPAKKVEG  297 (461)
T ss_dssp             S--EEEEEETTTT--EEEEEEES-TTEEEEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTEEEEEEEEEE--EE--S
T ss_pred             ccCeEEEEECCCC--cEeeEEecCCCCCceEEEEecCCCCccceEEEEeccceEEEEEEcCCCCeeeeEEEECCCcccCc
Confidence            5677999999764  444444  32223456889987544444 444444444444432233345433322110      


Q ss_pred             -------------CCCeeEEEecCCCCCcEEEEEecCCcEEEEEecCC
Q 022111          102 -------------KSSVNSIAWAPHELGLSLACGSSDGNISVFTATAD  136 (302)
Q Consensus       102 -------------~~~i~~l~~~pd~~~~~l~sg~~d~~v~~~~~~~~  136 (302)
                                   ..-|+.+..|.|+. .+.+++-..|.++.||++..
T Consensus       298 ~~lp~ml~~~~~~P~LitDI~iSlDDr-fLYvs~W~~GdvrqYDISDP  344 (461)
T PF05694_consen  298 WILPEMLKPFGAVPPLITDILISLDDR-FLYVSNWLHGDVRQYDISDP  344 (461)
T ss_dssp             S---GGGGGG-EE------EEE-TTS--EEEEEETTTTEEEEEE-SST
T ss_pred             ccccccccccccCCCceEeEEEccCCC-EEEEEcccCCcEEEEecCCC
Confidence                         24578999999854 35667778999999999754

The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.

>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=87.28  E-value=4.4  Score=40.76  Aligned_cols=141  Identities=13%  Similarity=0.139  Sum_probs=77.4

Q ss_pred             ceeEEEEccCCCEEE--EeeCCCcEEEEeecCCCc---eEEEEecC------cccCeEEEEeeCCCCCCEEEEEeCCCeE
Q 022111           13 TVHDVAMDFYGKRLA--TASSDSSIKIIGLSNSAS---QHLATLKG------HRGPVWQVAWAHPKFGSILASCSYDGQV   81 (302)
Q Consensus        13 ~v~~~~~s~~~~~l~--s~~~d~~v~lw~~~~~~~---~~~~~~~~------h~~~v~~v~~~~~~~~~~l~s~s~D~~i   81 (302)
                      ++..+...+|+...+  ..+.+-.|..||+..-..   +...-|..      ......++.|.|. -....|.+..|+.|
T Consensus       102 pi~~~v~~~D~t~s~v~~tsng~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~-vp~n~av~l~dlsl  180 (1405)
T KOG3630|consen  102 PIVIFVCFHDATDSVVVSTSNGEAVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPL-VPLNSAVDLSDLSL  180 (1405)
T ss_pred             cceEEEeccCCceEEEEEecCCceEEEEehHhhhhhhhhhccccccccchhccccccccccccCC-ccchhhhhccccch
Confidence            445555566765443  333444677888742110   00111111      1223356677643 34456788899999


Q ss_pred             EEEEcCCCCceeEEEEecCCCCCeeEEEecCCCCCcEEEEEecCCcEEEEEecCCCCeeeeeecccCCCCeEEEEeCC
Q 022111           82 IIWKEGNQNDWTQAHTFNDHKSSVNSIAWAPHELGLSLACGSSDGNISVFTATADGGWDTTRIDQAHPVGVTSVSWAP  159 (302)
Q Consensus        82 ~iwd~~~~~~~~~~~~~~~h~~~i~~l~~~pd~~~~~l~sg~~d~~v~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~  159 (302)
                      ++..+....  ..+..+. -....++++|+|.  |++++.|...|++.-|.-.-.-...+..........|.++.|-.
T Consensus       181 ~V~~~~~~~--~~v~s~p-~t~~~Tav~WSpr--GKQl~iG~nnGt~vQy~P~leik~~ip~Pp~~e~yrvl~v~Wl~  253 (1405)
T KOG3630|consen  181 RVKSTKQLA--QNVTSFP-VTNSQTAVLWSPR--GKQLFIGRNNGTEVQYEPSLEIKSEIPEPPVEENYRVLSVTWLS  253 (1405)
T ss_pred             hhhhhhhhh--hhhcccC-cccceeeEEeccc--cceeeEecCCCeEEEeecccceeecccCCCcCCCcceeEEEEec
Confidence            998653321  1122222 3456799999996  88999999999998886432111111111101135688999854

>KOG2377 consensus Uncharacterized conserved protein [Function unknown]

Probab=85.96  E-value=27  Score=31.86  Aligned_cols=145  Identities=10%  Similarity=0.115  Sum_probs=76.3

Q ss_pred             EeCCCeEEEEEcCCCCceeEEEEecCCCCCeeEEEecCCCCCcEEEEEecCCcEEEEEecCCCCeeeeeec-ccCCCCeE
Q 022111           75 CSYDGQVIIWKEGNQNDWTQAHTFNDHKSSVNSIAWAPHELGLSLACGSSDGNISVFTATADGGWDTTRID-QAHPVGVT  153 (302)
Q Consensus        75 ~s~D~~i~iwd~~~~~~~~~~~~~~~h~~~i~~l~~~pd~~~~~l~sg~~d~~v~~~~~~~~~~~~~~~~~-~~h~~~v~  153 (302)
                      |-..|.+.=|.....++..+..--....++|.++.|+||  .+.+|.-..++.|.++....+......... +.....|.
T Consensus        39 avrSggatgvvvkgpndDVpiSfdm~d~G~I~SIkFSlD--nkilAVQR~~~~v~f~nf~~d~~~l~~~~~ck~k~~~Il  116 (657)
T KOG2377|consen   39 AVRSGGATGVVVKGPNDDVPISFDMDDKGEIKSIKFSLD--NKILAVQRTSKTVDFCNFIPDNSQLEYTQECKTKNANIL  116 (657)
T ss_pred             EEecCCeeEEEEeCCCCCCCceeeecCCCceeEEEeccC--cceEEEEecCceEEEEecCCCchhhHHHHHhccCcceeE
Confidence            333444555655433322222222234679999999999  568999999999999876433221110000 12233477


Q ss_pred             EEEeCCCCCCCceeecccCCCceeEEEeeCCCcEEEEEEecCccccccccccccCCCceeEEEeeCCCCCCccEEEEEec
Q 022111          154 SVSWAPAMAPGALVGLGLLDPVQKLASCGCDNTVKVWKMYNGIWKMDCFPALQMHSDWVRSVAWAPNLGLPKSTIASASQ  233 (302)
Q Consensus       154 ~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~D~~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~l~s~s~  233 (302)
                      ...|+...               -+|--+.. -+.+|-+.....   .++..+.|+-.|+=-.|.|+...  -.++|+-+
T Consensus       117 GF~W~~s~---------------e~A~i~~~-G~e~y~v~pekr---slRlVks~~~nvnWy~yc~et~v--~LL~t~~~  175 (657)
T KOG2377|consen  117 GFCWTSST---------------EIAFITDQ-GIEFYQVLPEKR---SLRLVKSHNLNVNWYMYCPETAV--ILLSTTVL  175 (657)
T ss_pred             EEEEecCe---------------eEEEEecC-CeEEEEEchhhh---hhhhhhhcccCccEEEEccccce--Eeeecccc
Confidence            88887542               23333322 366666543221   22333456666777777776421  22333334


Q ss_pred             CCeEEEEEe
Q 022111          234 DGTVVIWTC  242 (302)
Q Consensus       234 D~~i~iwd~  242 (302)
                      .+++.-+-+
T Consensus       176 ~n~lnpf~~  184 (657)
T KOG2377|consen  176 ENVLNPFHF  184 (657)
T ss_pred             ccccccEEE
Confidence            444444443

>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []

Probab=85.69  E-value=20  Score=34.78  Aligned_cols=111  Identities=12%  Similarity=0.182  Sum_probs=70.7

Q ss_pred             CCCEEEEeeCCCcEEEEeecC-------C--C---------ceEEEEecCcccCeEEEEeeCCCCCCEEEEEeCCCeEEE
Q 022111           22 YGKRLATASSDSSIKIIGLSN-------S--A---------SQHLATLKGHRGPVWQVAWAHPKFGSILASCSYDGQVII   83 (302)
Q Consensus        22 ~~~~l~s~~~d~~v~lw~~~~-------~--~---------~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~s~D~~i~i   83 (302)
                      ....|+.|.+||.|.+|..+.       .  .         .++...+. -...+|++++..-+..++||.++.-..|.|
T Consensus       113 ~~EVLl~c~DdG~V~~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~-v~~SaWGLdIh~~~~~rlIAVSsNs~~VTV  191 (717)
T PF08728_consen  113 GEEVLLLCTDDGDVLAYYTETIIEAIERFSEDNDSGFSRLKIKPFFHLR-VGASAWGLDIHDYKKSRLIAVSSNSQEVTV  191 (717)
T ss_pred             CeeEEEEEecCCeEEEEEHHHHHHHHHhhccccccccccccCCCCeEee-cCCceeEEEEEecCcceEEEEecCCceEEE
Confidence            347899999999999997620       0  0         01222332 345789999851123678888888888888


Q ss_pred             EEcCCCCceeEEEEecCCCCCeeEEEecCCCC---C-cEEEEEecCCcEEEEEe
Q 022111           84 WKEGNQNDWTQAHTFNDHKSSVNSIAWAPHEL---G-LSLACGSSDGNISVFTA  133 (302)
Q Consensus        84 wd~~~~~~~~~~~~~~~h~~~i~~l~~~pd~~---~-~~l~sg~~d~~v~~~~~  133 (302)
                      |-............-..|...|.+|+|-++..   | ..|++++-.|.+.+|++
T Consensus       192 Faf~l~~~r~~~~~s~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I  245 (717)
T PF08728_consen  192 FAFALVDERFYHVPSHQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKI  245 (717)
T ss_pred             EEEeccccccccccccccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEE
Confidence            86533111001111112667899999987642   3 27889999999999877

RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].

>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]

Probab=85.08  E-value=24  Score=30.60  Aligned_cols=93  Identities=14%  Similarity=0.158  Sum_probs=50.9

Q ss_pred             ceeEEEEccCCCEEEEeeCC-CcEEEEeecCCC----ceE-EEEecCcccCeEEEEeeCCCCCCEEEEEeCCC-eEEEEE
Q 022111           13 TVHDVAMDFYGKRLATASSD-SSIKIIGLSNSA----SQH-LATLKGHRGPVWQVAWAHPKFGSILASCSYDG-QVIIWK   85 (302)
Q Consensus        13 ~v~~~~~s~~~~~l~s~~~d-~~v~lw~~~~~~----~~~-~~~~~~h~~~v~~v~~~~~~~~~~l~s~s~D~-~i~iwd   85 (302)
                      .-+.|+||||++.|..+-.. +.|.-|++....    .+. ...+..+.+.--.++..  .+|++-+++-.++ .|..|+
T Consensus       164 ~~NGla~SpDg~tly~aDT~~~~i~r~~~d~~~g~~~~~~~~~~~~~~~G~PDG~~vD--adG~lw~~a~~~g~~v~~~~  241 (307)
T COG3386         164 IPNGLAFSPDGKTLYVADTPANRIHRYDLDPATGPIGGRRGFVDFDEEPGLPDGMAVD--ADGNLWVAAVWGGGRVVRFN  241 (307)
T ss_pred             ecCceEECCCCCEEEEEeCCCCeEEEEecCcccCccCCcceEEEccCCCCCCCceEEe--CCCCEEEecccCCceEEEEC
Confidence            34579999999877766543 666666664211    111 11222223333345543  3477665444443 788887


Q ss_pred             cCCCCceeEEEEecCCCCCeeEEEec
Q 022111           86 EGNQNDWTQAHTFNDHKSSVNSIAWA  111 (302)
Q Consensus        86 ~~~~~~~~~~~~~~~h~~~i~~l~~~  111 (302)
                      .. +   +.+..+......+++++|-
T Consensus       242 pd-G---~l~~~i~lP~~~~t~~~Fg  263 (307)
T COG3386         242 PD-G---KLLGEIKLPVKRPTNPAFG  263 (307)
T ss_pred             CC-C---cEEEEEECCCCCCccceEe
Confidence            65 3   2455555554666777774

>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A

Probab=84.73  E-value=25  Score=30.41  Aligned_cols=172  Identities=12%  Similarity=0.249  Sum_probs=78.2

Q ss_pred             EEEcC-CCCceeEEEEecCCCCCeeEEEecCCCCCcEEEEEecCCcEEEEEecCCCCeeeeeecccCCCCeEEEEeCCCC
Q 022111           83 IWKEG-NQNDWTQAHTFNDHKSSVNSIAWAPHELGLSLACGSSDGNISVFTATADGGWDTTRIDQAHPVGVTSVSWAPAM  161 (302)
Q Consensus        83 iwd~~-~~~~~~~~~~~~~h~~~i~~l~~~pd~~~~~l~sg~~d~~v~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~  161 (302)
                      ||.-. .+..|+.+.  ..-.+.+..+.-++|  |.+++.++......-|+-. ...|.+...  .....+..+.|.|+.
T Consensus       126 iy~T~DgG~tW~~~~--~~~~gs~~~~~r~~d--G~~vavs~~G~~~~s~~~G-~~~w~~~~r--~~~~riq~~gf~~~~  198 (302)
T PF14870_consen  126 IYRTTDGGKTWQAVV--SETSGSINDITRSSD--GRYVAVSSRGNFYSSWDPG-QTTWQPHNR--NSSRRIQSMGFSPDG  198 (302)
T ss_dssp             EEEESSTTSSEEEEE---S----EEEEEE-TT--S-EEEEETTSSEEEEE-TT--SS-EEEE----SSS-EEEEEE-TTS
T ss_pred             EEEeCCCCCCeeEcc--cCCcceeEeEEECCC--CcEEEEECcccEEEEecCC-CccceEEcc--CccceehhceecCCC
Confidence            44433 344565433  344577888888877  7777776555544455532 123554432  235678899998863


Q ss_pred             CCCceeecccCCCceeEEEeeCCCcEEEEEEe--cCccccccccccccCCCceeEEEeeCCCCCCccEEEEEecCCeEEE
Q 022111          162 APGALVGLGLLDPVQKLASCGCDNTVKVWKMY--NGIWKMDCFPALQMHSDWVRSVAWAPNLGLPKSTIASASQDGTVVI  239 (302)
Q Consensus       162 ~~~~~~~~~~~~~~~~l~s~~~D~~v~iwd~~--~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~l~s~s~D~~i~i  239 (302)
                                    . |...+..+.|++=+..  ...|..... ....-.-.+.+++|.|+.    ...|+ +..|+|  
T Consensus       199 --------------~-lw~~~~Gg~~~~s~~~~~~~~w~~~~~-~~~~~~~~~ld~a~~~~~----~~wa~-gg~G~l--  255 (302)
T PF14870_consen  199 --------------N-LWMLARGGQIQFSDDPDDGETWSEPII-PIKTNGYGILDLAYRPPN----EIWAV-GGSGTL--  255 (302)
T ss_dssp             ----------------EEEEETTTEEEEEE-TTEEEEE---B--TTSS--S-EEEEEESSSS-----EEEE-ESTT-E--
T ss_pred             --------------C-EEEEeCCcEEEEccCCCCccccccccC-CcccCceeeEEEEecCCC----CEEEE-eCCccE--
Confidence                          2 3233466777776511  111211111 111122338999998873    44554 445544  


Q ss_pred             EEeccCCcceeeee-eccCCCcEEEEEEccCCCEEEEecCCceEEe
Q 022111          240 WTCAKEGEQWEGRV-LKDFKTPVWSVSWSLTGNLLAVADANNVTLW  284 (302)
Q Consensus       240 wd~~~~~~~~~~~~-~~~~~~~v~~~~~spdg~~la~~~~d~i~~w  284 (302)
                      +--.+.+..|+... .......++.|.|.++.+-++.|.+.-|..|
T Consensus       256 ~~S~DgGktW~~~~~~~~~~~n~~~i~f~~~~~gf~lG~~G~ll~~  301 (302)
T PF14870_consen  256 LVSTDGGKTWQKDRVGENVPSNLYRIVFVNPDKGFVLGQDGVLLRY  301 (302)
T ss_dssp             EEESSTTSS-EE-GGGTTSSS---EEEEEETTEEEEE-STTEEEEE
T ss_pred             EEeCCCCccceECccccCCCCceEEEEEcCCCceEEECCCcEEEEe
Confidence            33344445564322 1234556899999877788888854444434

>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=84.01  E-value=30  Score=30.61  Aligned_cols=227  Identities=14%  Similarity=0.104  Sum_probs=102.1

Q ss_pred             eEEEEccCCCEEEEeeC-CCcEEEEeecCCCceEEEEecCccc---CeEEEEeeCCCCCCEEEEEeCCCeEEEEEcCCCC
Q 022111           15 HDVAMDFYGKRLATASS-DSSIKIIGLSNSASQHLATLKGHRG---PVWQVAWAHPKFGSILASCSYDGQVIIWKEGNQN   90 (302)
Q Consensus        15 ~~~~~s~~~~~l~s~~~-d~~v~lw~~~~~~~~~~~~~~~h~~---~v~~v~~~~~~~~~~l~s~s~D~~i~iwd~~~~~   90 (302)
                      ..+-||||+++||-.-. +..|+.+.+.        .......   .+..+.|..+  |.--..    -.+.++|+.++.
T Consensus       104 ~~~~WSpd~~~la~~~~d~~~v~~~~~~--------~~~~~~~~yp~~~~~~YPk~--G~~np~----v~l~v~~~~~~~  169 (353)
T PF00930_consen  104 SAVWWSPDSKYLAFLRFDEREVPEYPLP--------DYSPPDSQYPEVESIRYPKA--GDPNPR----VSLFVVDLASGK  169 (353)
T ss_dssp             BSEEE-TTSSEEEEEEEE-TTS-EEEEE--------EESSSTESS-EEEEEE--BT--TS---E----EEEEEEESSSTC
T ss_pred             cceEECCCCCEEEEEEECCcCCceEEee--------ccCCccccCCcccccccCCC--CCcCCc----eEEEEEECCCCc
Confidence            34679999998886653 3555554431        1111111   3556776332  332221    136667776654


Q ss_pred             ceeEEEE---ecCCCCCeeEEEecCCCCCcEEEEEecCCc---EEEEEecCCCCeeeeeecccCCCCe---EEEEeC-CC
Q 022111           91 DWTQAHT---FNDHKSSVNSIAWAPHELGLSLACGSSDGN---ISVFTATADGGWDTTRIDQAHPVGV---TSVSWA-PA  160 (302)
Q Consensus        91 ~~~~~~~---~~~h~~~i~~l~~~pd~~~~~l~sg~~d~~---v~~~~~~~~~~~~~~~~~~~h~~~v---~~~~~~-~~  160 (302)
                      .. .+..   +..-...+..+.|.++.....+...+.+.+   +.++|..+... .... .......+   ....+. ++
T Consensus       170 ~~-~~~~~~~~~~~~~yl~~v~W~~d~~~l~~~~~nR~q~~~~l~~~d~~tg~~-~~~~-~e~~~~Wv~~~~~~~~~~~~  246 (353)
T PF00930_consen  170 TT-ELDPPNSLNPQDYYLTRVGWSPDGKRLWVQWLNRDQNRLDLVLCDASTGET-RVVL-EETSDGWVDVYDPPHFLGPD  246 (353)
T ss_dssp             CC-EE---HHHHTSSEEEEEEEEEETTEEEEEEEEETTSTEEEEEEEEECTTTC-EEEE-EEESSSSSSSSSEEEE-TTT
T ss_pred             EE-EeeeccccCCCccCcccceecCCCcEEEEEEcccCCCEEEEEEEECCCCce-eEEE-EecCCcceeeecccccccCC
Confidence            21 1111   123456788999998832123333333332   22344433211 1111 10111111   122221 21


Q ss_pred             CCCCceeecccCCCceeEEEeeCCCcEEEEEEecCccccccccccccCCCceeE-EEeeCCCCCCccEEEEEecC--CeE
Q 022111          161 MAPGALVGLGLLDPVQKLASCGCDNTVKVWKMYNGIWKMDCFPALQMHSDWVRS-VAWAPNLGLPKSTIASASQD--GTV  237 (302)
Q Consensus       161 ~~~~~~~~~~~~~~~~~l~s~~~D~~v~iwd~~~~~~~~~~~~~~~~h~~~v~~-v~~~p~~~~~~~~l~s~s~D--~~i  237 (302)
                                   ...+|.....||.-+|+-+......   ...++...-.|.. +.|++++   +....++..+  ..-
T Consensus       247 -------------~~~~l~~s~~~G~~hly~~~~~~~~---~~~lT~G~~~V~~i~~~d~~~---~~iyf~a~~~~p~~r  307 (353)
T PF00930_consen  247 -------------GNEFLWISERDGYRHLYLYDLDGGK---PRQLTSGDWEVTSILGWDEDN---NRIYFTANGDNPGER  307 (353)
T ss_dssp             -------------SSEEEEEEETTSSEEEEEEETTSSE---EEESS-SSS-EEEEEEEECTS---SEEEEEESSGGTTSB
T ss_pred             -------------CCEEEEEEEcCCCcEEEEEcccccc---eeccccCceeecccceEcCCC---CEEEEEecCCCCCce
Confidence                         2355555557887666665432211   2233444555655 6677775   3445555542  345


Q ss_pred             EEEEeccC-CcceeeeeeccCCCcEEEEEEccCCCEEEEecCC
Q 022111          238 VIWTCAKE-GEQWEGRVLKDFKTPVWSVSWSLTGNLLAVADAN  279 (302)
Q Consensus       238 ~iwd~~~~-~~~~~~~~~~~~~~~v~~~~~spdg~~la~~~~d  279 (302)
                      .+|.+... ....  ..+......-.+++|||+|++++...+.
T Consensus       308 ~lY~v~~~~~~~~--~~LT~~~~~~~~~~~Spdg~y~v~~~s~  348 (353)
T PF00930_consen  308 HLYRVSLDSGGEP--KCLTCEDGDHYSASFSPDGKYYVDTYSG  348 (353)
T ss_dssp             EEEEEETTETTEE--EESSTTSSTTEEEEE-TTSSEEEEEEES
T ss_pred             EEEEEEeCCCCCe--EeccCCCCCceEEEECCCCCEEEEEEcC
Confidence            66665543 2221  2222222222789999999999876543

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....

>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []

Probab=83.93  E-value=44  Score=32.55  Aligned_cols=159  Identities=14%  Similarity=0.080  Sum_probs=85.9

Q ss_pred             CCEEEEeeCCCcEEEEeecCCCceE----EEEe---------c-------CcccCeEEEEeeCCCCCCEEEEEeCCCeEE
Q 022111           23 GKRLATASSDSSIKIIGLSNSASQH----LATL---------K-------GHRGPVWQVAWAHPKFGSILASCSYDGQVI   82 (302)
Q Consensus        23 ~~~l~s~~~d~~v~lw~~~~~~~~~----~~~~---------~-------~h~~~v~~v~~~~~~~~~~l~s~s~D~~i~   82 (302)
                      ..+|+.| ..+.|.||+...-...+    ...+         .       .-...|+.|....-....+|+.|..||.|.
T Consensus        49 ~n~LFiA-~~s~I~Vy~~d~l~~~p~~~p~~~~~t~p~~~~~~D~~~s~~p~PHtIN~i~v~~lg~~EVLl~c~DdG~V~  127 (717)
T PF08728_consen   49 RNLLFIA-YQSEIYVYDPDGLTQLPSRKPCLRFDTKPEFTSTPDRLISTWPFPHTINFIKVGDLGGEEVLLLCTDDGDVL  127 (717)
T ss_pred             CCEEEEE-ECCEEEEEecCCcccccccccccccccCccccccccccccCCCCCceeeEEEecccCCeeEEEEEecCCeEE
Confidence            5566664 47889999974322100    0000         0       011235555543222245899999999999


Q ss_pred             EEEcCC-------C---Cc-------eeEEEEecCCCCCeeEEEecCCCCCcEEEEEecCCcEEEEEecCCCCeeeeeec
Q 022111           83 IWKEGN-------Q---ND-------WTQAHTFNDHKSSVNSIAWAPHELGLSLACGSSDGNISVFTATADGGWDTTRID  145 (302)
Q Consensus        83 iwd~~~-------~---~~-------~~~~~~~~~h~~~i~~l~~~pd~~~~~l~sg~~d~~v~~~~~~~~~~~~~~~~~  145 (302)
                      +|..+.       .   ..       ..+...+. -......|+++......+||.++....|.||-.............
T Consensus       128 ~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~-v~~SaWGLdIh~~~~~rlIAVSsNs~~VTVFaf~l~~~r~~~~~s  206 (717)
T PF08728_consen  128 AYYTETIIEAIERFSEDNDSGFSRLKIKPFFHLR-VGASAWGLDIHDYKKSRLIAVSSNSQEVTVFAFALVDERFYHVPS  206 (717)
T ss_pred             EEEHHHHHHHHHhhccccccccccccCCCCeEee-cCCceeEEEEEecCcceEEEEecCCceEEEEEEeccccccccccc
Confidence            996521       0   00       01111222 234667788871122457888888888888755431110101101


Q ss_pred             ccCCCCeEEEEeCCCCCCCceeecccCCCc-eeEEEeeCCCcEEEEEE
Q 022111          146 QAHPVGVTSVSWAPAMAPGALVGLGLLDPV-QKLASCGCDNTVKVWKM  192 (302)
Q Consensus       146 ~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~-~~l~s~~~D~~v~iwd~  192 (302)
                      ..|...|-+++|-+....         +.| ..+++++-.|.+-+|++
T Consensus       207 ~~~~hNIP~VSFl~~~~d---------~~G~v~v~a~dI~G~v~~~~I  245 (717)
T PF08728_consen  207 HQHSHNIPNVSFLDDDLD---------PNGHVKVVATDISGEVWTFKI  245 (717)
T ss_pred             cccccCCCeeEeecCCCC---------CccceEEEEEeccCcEEEEEE
Confidence            124445777888765311         112 26777888999998887

RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].

>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase

Probab=83.69  E-value=25  Score=29.54  Aligned_cols=147  Identities=17%  Similarity=0.237  Sum_probs=78.2

Q ss_pred             cCCCEEEEeeCCCcEEEEeecCCCceEEEEecCcccCeEEEEeeCCCCCCEEEEEeCCCeEEEEEcCCCCceeEE-----
Q 022111           21 FYGKRLATASSDSSIKIIGLSNSASQHLATLKGHRGPVWQVAWAHPKFGSILASCSYDGQVIIWKEGNQNDWTQA-----   95 (302)
Q Consensus        21 ~~~~~l~s~~~d~~v~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~s~D~~i~iwd~~~~~~~~~~-----   95 (302)
                      ..++.|+.|..+| +.+++.... .......  +...|..+...+.  -+.|+.- .|+++.++++..-......     
T Consensus         5 ~~~~~L~vGt~~G-l~~~~~~~~-~~~~~i~--~~~~I~ql~vl~~--~~~llvL-sd~~l~~~~L~~l~~~~~~~~~~~   77 (275)
T PF00780_consen    5 SWGDRLLVGTEDG-LYVYDLSDP-SKPTRIL--KLSSITQLSVLPE--LNLLLVL-SDGQLYVYDLDSLEPVSTSAPLAF   77 (275)
T ss_pred             cCCCEEEEEECCC-EEEEEecCC-ccceeEe--ecceEEEEEEecc--cCEEEEE-cCCccEEEEchhhccccccccccc
Confidence            4578899998888 889988322 1222222  2334989988754  2333332 4599999998543211100     


Q ss_pred             -------EEecCCCCCeeEEE-ecCCCCCcEEEEEecCCcEEEEEecCCC-Ce--eeeeecccCCCCeEEEEeCCCCCCC
Q 022111           96 -------HTFNDHKSSVNSIA-WAPHELGLSLACGSSDGNISVFTATADG-GW--DTTRIDQAHPVGVTSVSWAPAMAPG  164 (302)
Q Consensus        96 -------~~~~~h~~~i~~l~-~~pd~~~~~l~sg~~d~~v~~~~~~~~~-~~--~~~~~~~~h~~~v~~~~~~~~~~~~  164 (302)
                             ..+. ....+..++ -.... +...+.....++|.+|...... .+  ...++  .-+..+.++.|..     
T Consensus        78 ~~~~~~~~~~~-~~~~v~~f~~~~~~~-~~~~L~va~kk~i~i~~~~~~~~~f~~~~ke~--~lp~~~~~i~~~~-----  148 (275)
T PF00780_consen   78 PKSRSLPTKLP-ETKGVSFFAVNGGHE-GSRRLCVAVKKKILIYEWNDPRNSFSKLLKEI--SLPDPPSSIAFLG-----  148 (275)
T ss_pred             ccccccccccc-ccCCeeEEeeccccc-cceEEEEEECCEEEEEEEECCcccccceeEEE--EcCCCcEEEEEeC-----
Confidence                   0111 112223332 11222 3344455566799999876531 22  22222  2345677888863     


Q ss_pred             ceeecccCCCceeEEEeeCCCcEEEEEEecC
Q 022111          165 ALVGLGLLDPVQKLASCGCDNTVKVWKMYNG  195 (302)
Q Consensus       165 ~~~~~~~~~~~~~l~s~~~D~~v~iwd~~~~  195 (302)
                                 ..|+.|.. +...+.|+.++
T Consensus       149 -----------~~i~v~~~-~~f~~idl~~~  167 (275)
T PF00780_consen  149 -----------NKICVGTS-KGFYLIDLNTG  167 (275)
T ss_pred             -----------CEEEEEeC-CceEEEecCCC
Confidence                       34555544 44778888754

These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity

>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []

Probab=83.05  E-value=27  Score=29.33  Aligned_cols=165  Identities=13%  Similarity=0.155  Sum_probs=81.0

Q ss_pred             ccccccceeEEEEccCCCEEE-EeeCCCcEEEEeecCCCceEEEE--ecCcccCeEEEEeeCCCCCCEEEEEeCCCeEEE
Q 022111            7 ETGHEDTVHDVAMDFYGKRLA-TASSDSSIKIIGLSNSASQHLAT--LKGHRGPVWQVAWAHPKFGSILASCSYDGQVII   83 (302)
Q Consensus         7 ~~~h~~~v~~~~~s~~~~~l~-s~~~d~~v~lw~~~~~~~~~~~~--~~~h~~~v~~v~~~~~~~~~~l~s~s~D~~i~i   83 (302)
                      ..+-.+.+.+++|+|+.+.|+ +....+.|..++.+   ++.+..  +.+ .+..-.|++..+  +.++++--.++.+.+
T Consensus        17 l~g~~~e~SGLTy~pd~~tLfaV~d~~~~i~els~~---G~vlr~i~l~g-~~D~EgI~y~g~--~~~vl~~Er~~~L~~   90 (248)
T PF06977_consen   17 LPGILDELSGLTYNPDTGTLFAVQDEPGEIYELSLD---GKVLRRIPLDG-FGDYEGITYLGN--GRYVLSEERDQRLYI   90 (248)
T ss_dssp             -TT--S-EEEEEEETTTTEEEEEETTTTEEEEEETT-----EEEEEE-SS--SSEEEEEE-ST--TEEEEEETTTTEEEE
T ss_pred             CCCccCCccccEEcCCCCeEEEEECCCCEEEEEcCC---CCEEEEEeCCC-CCCceeEEEECC--CEEEEEEcCCCcEEE
Confidence            345556799999999866554 44455666555543   233333  444 245678888642  555555445888988


Q ss_pred             EEcCCCCc---eeEEEEec-----CCCCCeeEEEecCCCCCcEEEEEecCCcEEEEEecC--CC-Ceeeeee-----ccc
Q 022111           84 WKEGNQND---WTQAHTFN-----DHKSSVNSIAWAPHELGLSLACGSSDGNISVFTATA--DG-GWDTTRI-----DQA  147 (302)
Q Consensus        84 wd~~~~~~---~~~~~~~~-----~h~~~i~~l~~~pd~~~~~l~sg~~d~~v~~~~~~~--~~-~~~~~~~-----~~~  147 (302)
                      .++.....   ......+.     .++.-+-.++|.|..  ..|..+-...-..+|.+..  .. .......     ...
T Consensus        91 ~~~~~~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~--~~L~v~kE~~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~  168 (248)
T PF06977_consen   91 FTIDDDTTSLDRADVQKISLGFPNKGNKGFEGLAYDPKT--NRLFVAKERKPKRLYEVNGFPGGFDLFVSDDQDLDDDKL  168 (248)
T ss_dssp             EEE----TT--EEEEEEEE---S---SS--EEEEEETTT--TEEEEEEESSSEEEEEEESTT-SS--EEEE-HHHH-HT-
T ss_pred             EEEeccccccchhhceEEecccccCCCcceEEEEEcCCC--CEEEEEeCCCChhhEEEccccCccceeeccccccccccc
Confidence            88743221   11111111     245568899999873  3455555566667776653  11 1111000     011


Q ss_pred             CCCCeEEEEeCCCCCCCceeecccCCCceeEEEeeCCCcEEEEEE
Q 022111          148 HPVGVTSVSWAPAMAPGALVGLGLLDPVQKLASCGCDNTVKVWKM  192 (302)
Q Consensus       148 h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~D~~v~iwd~  192 (302)
                      ....++++.+.|..             +.+++-+...+.|-.+|.
T Consensus       169 ~~~d~S~l~~~p~t-------------~~lliLS~es~~l~~~d~  200 (248)
T PF06977_consen  169 FVRDLSGLSYDPRT-------------GHLLILSDESRLLLELDR  200 (248)
T ss_dssp             -SS---EEEEETTT-------------TEEEEEETTTTEEEEE-T
T ss_pred             eeccccceEEcCCC-------------CeEEEEECCCCeEEEECC
Confidence            22345677776643             456666777777777773

Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.

>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs

Probab=82.86  E-value=44  Score=32.85  Aligned_cols=42  Identities=19%  Similarity=0.364  Sum_probs=33.0

Q ss_pred             cCCCceeEEEeeCCCCCCccEEEEEecCCeEEEEEeccCCcce
Q 022111          207 MHSDWVRSVAWAPNLGLPKSTIASASQDGTVVIWTCAKEGEQW  249 (302)
Q Consensus       207 ~h~~~v~~v~~~p~~~~~~~~l~s~s~D~~i~iwd~~~~~~~~  249 (302)
                      .+...|..+.|+|.+ .++.+|+.=..|++||+||+.....++
T Consensus       144 ~~~~~i~qv~WhP~s-~~~~~l~vLtsdn~lR~y~~~~~~~p~  185 (717)
T PF10168_consen  144 NSSLEIKQVRWHPWS-ESDSHLVVLTSDNTLRLYDISDPQHPW  185 (717)
T ss_pred             CCCceEEEEEEcCCC-CCCCeEEEEecCCEEEEEecCCCCCCe
Confidence            345679999999974 346889999999999999997654443

It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].

>PF14727 PHTB1_N: PTHB1 N-terminus

Probab=82.48  E-value=12  Score=33.96  Aligned_cols=76  Identities=22%  Similarity=0.243  Sum_probs=49.9

Q ss_pred             ccEEEEEecCCeEEEEEeccCCccee-eeeeccCCCcEEEEEE---cc--CCCEEEEecCCceEEeee-cCCc------e
Q 022111          225 KSTIASASQDGTVVIWTCAKEGEQWE-GRVLKDFKTPVWSVSW---SL--TGNLLAVADANNVTLWKE-AVDG------E  291 (302)
Q Consensus       225 ~~~l~s~s~D~~i~iwd~~~~~~~~~-~~~~~~~~~~v~~~~~---sp--dg~~la~~~~d~i~~w~~-~~~~------~  291 (302)
                      ...|+.||..|.+||++......... ..+-...+.||..++.   .+  +...||+-...++.+|.. ..+|      +
T Consensus        37 ~d~IivGS~~G~LrIy~P~~~~~~~~~lllE~~l~~PILqv~~G~F~s~~~~~~LaVLhP~kl~vY~v~~~~g~~~~g~~  116 (418)
T PF14727_consen   37 SDKIIVGSYSGILRIYDPSGNEFQPEDLLLETQLKDPILQVECGKFVSGSEDLQLAVLHPRKLSVYSVSLVDGTVEHGNQ  116 (418)
T ss_pred             ccEEEEeccccEEEEEccCCCCCCCccEEEEEecCCcEEEEEeccccCCCCcceEEEecCCEEEEEEEEecCCCcccCcE
Confidence            46899999999999999855331111 1122456778888764   23  446888888889999987 2222      3


Q ss_pred             EEEeeecCC
Q 022111          292 WQQVSVVEP  300 (302)
Q Consensus       292 ~~~~~~~~~  300 (302)
                      +.....++|
T Consensus       117 ~~L~~~yeh  125 (418)
T PF14727_consen  117 YQLELIYEH  125 (418)
T ss_pred             EEEEEEEEE
Confidence            665555554

>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus

Probab=80.60  E-value=26  Score=31.86  Aligned_cols=36  Identities=11%  Similarity=0.147  Sum_probs=28.2

Q ss_pred             ccccccceeEEEEccCCCEEEEeeCCCcEEEEeecC
Q 022111            7 ETGHEDTVHDVAMDFYGKRLATASSDSSIKIIGLSN   42 (302)
Q Consensus         7 ~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~lw~~~~   42 (302)
                      +......+.+++.+|++++.|+...-|.|.|+|+..
T Consensus       303 l~D~~R~~~~i~~sP~~~laA~tDslGRV~LiD~~~  338 (415)
T PF14655_consen  303 LPDSKREGESICLSPSGRLAAVTDSLGRVLLIDVAR  338 (415)
T ss_pred             eccCCceEEEEEECCCCCEEEEEcCCCcEEEEECCC
Confidence            334455688899999998888776669999999865

>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea

Probab=80.41  E-value=46  Score=30.35  Aligned_cols=235  Identities=11%  Similarity=0.112  Sum_probs=90.4

Q ss_pred             CCCEEEEee-CCCcEEEEeecCCCc--eEEEEecC---cc-cCeE--EEEeeCCCCCCEEEEEeC------CCeEEEEEc
Q 022111           22 YGKRLATAS-SDSSIKIIGLSNSAS--QHLATLKG---HR-GPVW--QVAWAHPKFGSILASCSY------DGQVIIWKE   86 (302)
Q Consensus        22 ~~~~l~s~~-~d~~v~lw~~~~~~~--~~~~~~~~---h~-~~v~--~v~~~~~~~~~~l~s~s~------D~~i~iwd~   86 (302)
                      ..++|+..+ ....|+|.|+...+.  +..+.+..   +. ..+.  .-..+-+ +|.+++|+-.      -|-+.+.|-
T Consensus        86 ~Rr~Li~PgL~SsrIyviD~~~dPr~P~l~KvIe~~ev~~k~g~s~PHT~Hclp-~G~imIS~lGd~~G~g~Ggf~llD~  164 (461)
T PF05694_consen   86 ERRYLILPGLRSSRIYVIDTKTDPRKPRLHKVIEPEEVFEKTGLSRPHTVHCLP-DGRIMISALGDADGNGPGGFVLLDG  164 (461)
T ss_dssp             -S-EEEEEBTTT--EEEEE--S-TTS-EEEEEE-HHHHHHHH-EEEEEEEEE-S-S--EEEEEEEETTS-S--EEEEE-T
T ss_pred             cCCcEEeeeeccCcEEEEECCCCCCCCceEeeeCHHHHHhhcCCCCCceeeecC-CccEEEEeccCCCCCCCCcEEEEcC
Confidence            357888888 568899999864332  22222221   11 0110  0001112 3777777622      233555554


Q ss_pred             CCCCceeEEEEecC---CCCCeeEEEecCCCCCcEEEEEe--------------------cCCcEEEEEecCCCCeeeee
Q 022111           87 GNQNDWTQAHTFND---HKSSVNSIAWAPHELGLSLACGS--------------------SDGNISVFTATADGGWDTTR  143 (302)
Q Consensus        87 ~~~~~~~~~~~~~~---h~~~i~~l~~~pd~~~~~l~sg~--------------------~d~~v~~~~~~~~~~~~~~~  143 (302)
                      ++-   ........   ....-..+-|.|..  ..++|..                    ..+++.+||+.+....+...
T Consensus       165 ~tf---~v~g~We~~~~~~~~gYDfw~qpr~--nvMiSSeWg~P~~~~~Gf~~~d~~~~~yG~~l~vWD~~~r~~~Q~id  239 (461)
T PF05694_consen  165 ETF---EVKGRWEKDRGPQPFGYDFWYQPRH--NVMISSEWGAPSMFEKGFNPEDLEAGKYGHSLHVWDWSTRKLLQTID  239 (461)
T ss_dssp             TT-----EEEE--SB-TT------EEEETTT--TEEEE-B---HHHHTT---TTTHHHH-S--EEEEEETTTTEEEEEEE
T ss_pred             ccc---cccceeccCCCCCCCCCCeEEcCCC--CEEEEeccCChhhcccCCChhHhhcccccCeEEEEECCCCcEeeEEe
Confidence            321   11122211   12233455566642  2444442                    45789999997654333333


Q ss_pred             ecccCCCCeEEEEeCCCCCCCceeecccCCCceeEEEeeCCCcEEEEEE-ecCcccccccc-----------------cc
Q 022111          144 IDQAHPVGVTSVSWAPAMAPGALVGLGLLDPVQKLASCGCDNTVKVWKM-YNGIWKMDCFP-----------------AL  205 (302)
Q Consensus       144 ~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~D~~v~iwd~-~~~~~~~~~~~-----------------~~  205 (302)
                      +...+ .....+.|..+..           ...-++.|....+|-.|-- ..+.|..+.+.                 .+
T Consensus       240 Lg~~g-~~pLEvRflH~P~-----------~~~gFvg~aLss~i~~~~k~~~g~W~a~kVi~ip~~~v~~~~lp~ml~~~  307 (461)
T PF05694_consen  240 LGEEG-QMPLEVRFLHDPD-----------ANYGFVGCALSSSIWRFYKDDDGEWAAEKVIDIPAKKVEGWILPEMLKPF  307 (461)
T ss_dssp             S-TTE-EEEEEEEE-SSTT-------------EEEEEEE--EEEEEEEE-ETTEEEEEEEEEE--EE--SS---GGGGGG
T ss_pred             cCCCC-CceEEEEecCCCC-----------ccceEEEEeccceEEEEEEcCCCCeeeeEEEECCCcccCccccccccccc
Confidence            32111 1233445533211           0233555555555554433 55555433221                 22


Q ss_pred             ccCCCceeEEEeeCCCCCCccEE-EEEecCCeEEEEEeccCCccee-eeee-c--------------cCCCcEEEEEEcc
Q 022111          206 QMHSDWVRSVAWAPNLGLPKSTI-ASASQDGTVVIWTCAKEGEQWE-GRVL-K--------------DFKTPVWSVSWSL  268 (302)
Q Consensus       206 ~~h~~~v~~v~~~p~~~~~~~~l-~s~s~D~~i~iwd~~~~~~~~~-~~~~-~--------------~~~~~v~~~~~sp  268 (302)
                      ..-..-|++|..|.|.    ++| ++.=.+|.||.||+.....+.. .++. .              ...+...=|..|.
T Consensus       308 ~~~P~LitDI~iSlDD----rfLYvs~W~~GdvrqYDISDP~~Pkl~gqv~lGG~~~~~~~~~v~g~~l~GgPqMvqlS~  383 (461)
T PF05694_consen  308 GAVPPLITDILISLDD----RFLYVSNWLHGDVRQYDISDPFNPKLVGQVFLGGSIRKGDHPVVKGKRLRGGPQMVQLSL  383 (461)
T ss_dssp             -EE------EEE-TTS-----EEEEEETTTTEEEEEE-SSTTS-EEEEEEE-BTTTT-B--TTS------S----EEE-T
T ss_pred             ccCCCceEeEEEccCC----CEEEEEcccCCcEEEEecCCCCCCcEEeEEEECcEeccCCCccccccccCCCCCeEEEcc
Confidence            2224568999999884    444 4444699999999987543322 1111 1              0112234578899


Q ss_pred             CCCEEEEecC
Q 022111          269 TGNLLAVADA  278 (302)
Q Consensus       269 dg~~la~~~~  278 (302)
                      ||++|-+..+
T Consensus       384 DGkRlYvTnS  393 (461)
T PF05694_consen  384 DGKRLYVTNS  393 (461)
T ss_dssp             TSSEEEEE--
T ss_pred             CCeEEEEEee
Confidence            9999977743

The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	302
3bg0_A	316	Architecture Of A Coat For The Nuclear Pore Membran		1e-85
3bg0_A	316	Architecture Of A Coat For The Nuclear Pore Membran		4e-07
3jro_A	753	Nup84-Nup145c-Sec13 Edge Element Of The Npc Lattice		1e-66
2pm9_B	297	Crystal Structure Of Yeast Sec1331 VERTEX ELEMENT O		4e-66
3jrp_A	379	Sec13 With Nup145c (Aa109-179) Insertion Blade Leng		5e-66
2pm6_B	297	Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF		9e-66
2pm7_B	297	Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF		4e-64
3ewe_A	349	Crystal Structure Of The Nup85SEH1 COMPLEX Length =		3e-29
3f3p_A	351	Crystal Structure Of The Nucleoporin Pair Nup85-Seh		3e-29
3f3f_A	351	Crystal Structure Of The Nucleoporin Pair Nup85-Seh		3e-29
2ymu_A	577	Structure Of A Highly Repetitive Propeller Structur		3e-17
2hes_X	330	Cytosolic Iron-sulphur Assembly Protein- 1 Length =		3e-15
2hes_X	330	Cytosolic Iron-sulphur Assembly Protein- 1 Length =		1e-08
3fm0_A	345	Crystal Structure Of Wd40 Protein Ciao1 Length = 34		4e-15
3fm0_A	345	Crystal Structure Of Wd40 Protein Ciao1 Length = 34		4e-13
1vyh_C	410	Paf-Ah Holoenzyme: Lis1ALFA2 Length = 410		4e-10
3mks_B	464	Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH		7e-08
4gga_A	420	Structural Analysis Of Human Cdc20 Supports Multi-S		3e-07
4ggd_A	431	Structural Analysis Of Human Cdc20 Supports Multisi		3e-07
4ggc_A	318	Structural Analysis Of Human Cdc20 Supports Multi-S		4e-07
1p22_A	435	Structure Of A Beta-Trcp1-Skp1-Beta-Catenin Complex		6e-07
2xyi_A	430	Crystal Structure Of Nurf55 In Complex With A H4 Pe		6e-07
3c99_A	432	Structural Basis Of Histone H4 Recognition By P55 L		7e-07
1nex_B	464	Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Comp		7e-07
2yba_A	422	Crystal Structure Of Nurf55 In Complex With Histone		7e-07
2ovp_B	445	Structure Of The Skp1-Fbw7 Complex Length = 445		3e-06
3iza_B	1263	Structure Of An Apoptosome-Procaspase-9 Card Comple		3e-06
3sfz_A	1249	Crystal Structure Of Full-Length Murine Apaf-1 Leng		3e-06
3shf_A	1256	Crystal Structure Of The R265s Mutant Of Full-Lengt		4e-06
3iz6_a	380	Localization Of The Small Subunit Ribosomal Protein		4e-06
2pbi_B	354	The Multifunctional Nature Of Gbeta5RGS9 REVEALED F		6e-06
3cfs_B	414	Structural Basis Of The Interaction Of Rbap46RBAP48		6e-06
3cfs_B	414	Structural Basis Of The Interaction Of Rbap46RBAP48		6e-05
4g56_B	357	Crystal Structure Of Full Length Prmt5/mep50 Comple		1e-05
1gg2_B	340	G Protein Heterotrimer Mutant Gi_alpha_1(G203a) Bet		1e-05
2bcj_B	340	Crystal Structure Of G Protein-coupled Receptor Kin		1e-05
3sn6_B	351	Crystal Structure Of The Beta2 Adrenergic Receptor-		1e-05
1a0r_B	340	Heterotrimeric Complex Of PhosducinTRANSDUCIN BETA-		2e-05
1got_B	340	Heterotrimeric Complex Of A Gt-AlphaGI-Alpha Chimer		2e-05
3gfc_A	425	Crystal Structure Of Histone-Binding Protein Rbbp4		2e-05
4aow_A	340	Crystal Structure Of The Human Rack1 Protein At A R		3e-05
2zkq_a	317	Structure Of A Mammalian Ribosomal 40s Subunit With		4e-05
3cfv_B	414	Structural Basis Of The Interaction Of Rbap46RBAP48		5e-05
3zey_7	318	High-resolution Cryo-electron Microscopy Structure		1e-04
4a11_B	408	Structure Of The Hsddb1-Hscsa Complex Length = 408		7e-04
3dwl_C	377	Crystal Structure Of Fission Yeast Arp2/3 Complex L		9e-04

>pdb|3BG0|A Chain A, Architecture Of A Coat For The Nuclear Pore Membrane Length = 316

Iteration: 1
 Score =  313 bits (801), Expect = 1e-85,   Method: Compositional matrix adjust.
 Identities = 160/299 (53%), Positives = 206/299 (68%), Gaps = 9/299 (3%)
Query: 6   IETGHEDTVHDVAMDFYGKRLATASSDSSIKIIGLSNSASQHLATLKGHRGPVWQVAWAH 65
           ++T HED +HD  MD+YG RLAT SSD S+KI  + N     +A L+GH GPVWQVAWAH
Sbjct: 8   VDTSHEDMIHDAQMDYYGTRLATCSSDRSVKIFDVRNGGQILIADLRGHEGPVWQVAWAH 67
Query: 66  PKFGSILASCSYDGQVIIWKEGNQNDWTQAHTFNDHKSSVNSIAWAPHELGLSLACGSSD 125
           P +G+ILASCSYD +VIIW+E N   W ++H    H SSVNS+ WAPH+ GL LACGSSD
Sbjct: 68  PMYGNILASCSYDRKVIIWREEN-GTWEKSHEHAGHDSSVNSVCWAPHDYGLILACGSSD 126
Query: 126 GNISVFTATADGGWDTTRIDQAHPVGVTSVSWAPAMAPGALVGL---GLLDPVQKLASCG 182
           G IS+ T T +G W+  +I+ AH +G  +VSWAPA+ PG+L+        + +++ AS G
Sbjct: 127 GAISLLTYTGEGQWEVKKINNAHTIGCNAVSWAPAVVPGSLIDHPSGQKPNYIKRFASGG 186
Query: 183 CDNTVKVWK-MYNGIWKMDCFPALQMHSDWVRSVAWAPNLGLPKSTIASASQDGTVVIWT 241
           CDN +K+WK   +G WK +    L+ HSDWVR VAWAP++GLP STIAS SQDG V IWT
Sbjct: 187 CDNLIKLWKEEEDGQWKEE--QKLEAHSDWVRDVAWAPSIGLPTSTIASCSQDGRVFIWT 244
Query: 242 CAK-EGEQWEGRVLKDFKTPVWSVSWSLTGNLLAVADANN-VTLWKEAVDGEWQQVSVV 298
           C       W  ++L  F   VW VSWS+T N+LAV+  +N VTLWKE+VDG+W  +S V
Sbjct: 245 CDDASSNTWSPKLLHKFNDVVWHVSWSITANILAVSGGDNKVTLWKESVDGQWVCISDV 303

>pdb|3BG0|A Chain A, Architecture Of A Coat For The Nuclear Pore Membrane Length = 316

Iteration: 1
 Score = 52.0 bits (123), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 61/208 (29%), Positives = 89/208 (42%), Gaps = 39/208 (18%)
Query: 115 LGLSLACGSSDGNISVFTATADGGWDTTRIDQAHPVGVTSVSWAPAMAPGALVGLGLLDP 174
            G  LA  SSD ++ +F    +GG       + H   V  V+WA  M    L        
Sbjct: 24  YGTRLATCSSDRSVKIFDVR-NGGQILIADLRGHEGPVWQVAWAHPMYGNIL-------- 74
Query: 175 VQKLASCGCDNTVKVWKMYNGIWKMDCFPALQMHSDWVRSVAWAP-NLGLPKSTIASASQ 233
               ASC  D  V +W+  NG W+     A   H   V SV WAP + GL    +A  S 
Sbjct: 75  ----ASCSYDRKVIIWREENGTWEKSHEHA--GHDSSVNSVCWAPHDYGL---ILACGSS 125
Query: 234 DGTVVIWTCAKEGEQWEGRVLKDFKT-PVWSVSWS---LTGNLL--------------AV 275
           DG + + T   EG QWE + + +  T    +VSW+   + G+L+              A 
Sbjct: 126 DGAISLLTYTGEG-QWEVKKINNAHTIGCNAVSWAPAVVPGSLIDHPSGQKPNYIKRFAS 184
Query: 276 ADANN-VTLWKEAVDGEWQQVSVVEPQT 302
              +N + LWKE  DG+W++   +E  +
Sbjct: 185 GGCDNLIKLWKEEEDGQWKEEQKLEAHS 212

>pdb|3JRO|A Chain A, Nup84-Nup145c-Sec13 Edge Element Of The Npc Lattice Length = 753

Iteration: 1
 Score =  249 bits (636), Expect = 1e-66,   Method: Compositional matrix adjust.
 Identities = 137/291 (47%), Positives = 179/291 (61%), Gaps = 7/291 (2%)
Query: 6   IETGHEDTVHDVAMDFYGKRLATASSDSSIKIIGLSNSASQHLATLKGHRGPVWQVAWAH 65
           I   H + +HD  +D+YGKRLAT SSD +IKI  +     + + TL GH GPVW+V WAH
Sbjct: 4   IANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAH 63
Query: 66  PKFGSILASCSYDGQVIIWKEGNQNDWTQAHTFNDHKSSVNSIAWAPHELGLSLACGSSD 125
           PKFG+ILASCSYDG+V+IWKE N   W+Q      H +SVNS+ WAPHE G  L   SSD
Sbjct: 64  PKFGTILASCSYDGKVLIWKEEN-GRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSD 122
Query: 126 GNISVFTATADGGWDTTRIDQAHPVGVTSVSWAPAMAPGALVGLGLLDPVQKLASCGCDN 185
           G +SV     +G      ID AH +GV S SWAPA         G  +  +K  + G DN
Sbjct: 123 GKVSVVEFKENGTTSPIIID-AHAIGVNSASWAPATIEEDGEHNGTKES-RKFVTGGADN 180
Query: 186 TVKVWKMYNGIWKMDCFPALQMHSDWVRSVAWAPNLGLPKSTIASASQDGTVVIWTCAKE 245
            VK+WK  +          L+ HSDWVR VAW+P + L +S +AS SQD T +IWT   E
Sbjct: 181 LVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTV-LLRSYLASVSQDRTCIIWTQDNE 239
Query: 246 GEQWEGRVLKDFKTP--VWSVSWSLTGNLLAVADANN-VTLWKEAVDGEWQ 293
              W+  +LK+ K P  +W  SWSL+GN+LA++  +N VTLWKE ++G+W+
Sbjct: 240 QGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKENLEGKWE 290

>pdb|2PM9|B Chain B, Crystal Structure Of Yeast Sec1331 VERTEX ELEMENT OF THE Copii Vesicular Coat Length = 297

Iteration: 1
 Score =  247 bits (631), Expect = 4e-66,   Method: Compositional matrix adjust.
 Identities = 137/291 (47%), Positives = 179/291 (61%), Gaps = 7/291 (2%)
Query: 6   IETGHEDTVHDVAMDFYGKRLATASSDSSIKIIGLSNSASQHLATLKGHRGPVWQVAWAH 65
           I   H + +HD  MD+YGKR+AT SSD +IKI  +     + + TL GH GPVW+V WAH
Sbjct: 4   IANAHNEMIHDAVMDYYGKRMATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAH 63
Query: 66  PKFGSILASCSYDGQVIIWKEGNQNDWTQAHTFNDHKSSVNSIAWAPHELGLSLACGSSD 125
           PKFG+ILASCSYDG+V+IWKE N   W+Q      H +SVNS+ WAPHE G  L   SSD
Sbjct: 64  PKFGTILASCSYDGKVMIWKEEN-GRWSQIAVHAVHSASVNSVQWAPHEYGPMLLVASSD 122
Query: 126 GNISVFTATADGGWDTTRIDQAHPVGVTSVSWAPAMAPGALVGLGLLDPVQKLASCGCDN 185
           G +SV     +G      ID AH +GV S SWAPA         G  +  +K  + G DN
Sbjct: 123 GKVSVVEFKENGTTSPIIID-AHAIGVNSASWAPATIEEDGEHNGTKES-RKFVTGGADN 180
Query: 186 TVKVWKMYNGIWKMDCFPALQMHSDWVRSVAWAPNLGLPKSTIASASQDGTVVIWTCAKE 245
            VK+WK  +          L+ HSDWVR VAW+P + L +S +AS SQD T +IWT   E
Sbjct: 181 LVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTV-LLRSYMASVSQDRTCIIWTQDNE 239
Query: 246 GEQWEGRVLKDFKTP--VWSVSWSLTGNLLAVADANN-VTLWKEAVDGEWQ 293
              W+  +LK+ K P  +W  SWSL+GN+LA++  +N VTLWKE ++G+W+
Sbjct: 240 QGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKENLEGKWE 290

>pdb|3JRP|A Chain A, Sec13 With Nup145c (Aa109-179) Insertion Blade Length = 379

Iteration: 1
 Score =  247 bits (631), Expect = 5e-66,   Method: Compositional matrix adjust.
 Identities = 137/291 (47%), Positives = 179/291 (61%), Gaps = 7/291 (2%)
Query: 6   IETGHEDTVHDVAMDFYGKRLATASSDSSIKIIGLSNSASQHLATLKGHRGPVWQVAWAH 65
           I   H + +HD  +D+YGKRLAT SSD +IKI  +     + + TL GH GPVW+V WAH
Sbjct: 6   IANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAH 65
Query: 66  PKFGSILASCSYDGQVIIWKEGNQNDWTQAHTFNDHKSSVNSIAWAPHELGLSLACGSSD 125
           PKFG+ILASCSYDG+V+IWKE N   W+Q      H +SVNS+ WAPHE G  L   SSD
Sbjct: 66  PKFGTILASCSYDGKVLIWKEENGR-WSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSD 124
Query: 126 GNISVFTATADGGWDTTRIDQAHPVGVTSVSWAPAMAPGALVGLGLLDPVQKLASCGCDN 185
           G +SV     +G      ID AH +GV S SWAPA         G  +  +K  + G DN
Sbjct: 125 GKVSVVEFKENGTTSPIIID-AHAIGVNSASWAPATIEEDGEHNGTKES-RKFVTGGADN 182
Query: 186 TVKVWKMYNGIWKMDCFPALQMHSDWVRSVAWAPNLGLPKSTIASASQDGTVVIWTCAKE 245
            VK+WK  +          L+ HSDWVR VAW+P + L +S +AS SQD T +IWT   E
Sbjct: 183 LVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTV-LLRSYLASVSQDRTCIIWTQDNE 241
Query: 246 GEQWEGRVLKDFKTP--VWSVSWSLTGNLLAVADANN-VTLWKEAVDGEWQ 293
              W+  +LK+ K P  +W  SWSL+GN+LA++  +N VTLWKE ++G+W+
Sbjct: 242 QGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKENLEGKWE 292

>pdb|2PM6|B Chain B, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE Copii Vesicular Coat, Native Version Length = 297

Iteration: 1
 Score =  246 bits (629), Expect = 9e-66,   Method: Compositional matrix adjust.
 Identities = 137/291 (47%), Positives = 179/291 (61%), Gaps = 7/291 (2%)
Query: 6   IETGHEDTVHDVAMDFYGKRLATASSDSSIKIIGLSNSASQHLATLKGHRGPVWQVAWAH 65
           I   H + +HD  +D+YGKRLAT SSD +IKI  +     + + TL GH GPVW+V WAH
Sbjct: 4   IANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAH 63
Query: 66  PKFGSILASCSYDGQVIIWKEGNQNDWTQAHTFNDHKSSVNSIAWAPHELGLSLACGSSD 125
           PKFG+ILASCSYDG+V+IWKE N   W+Q      H +SVNS+ WAPHE G  L   SSD
Sbjct: 64  PKFGTILASCSYDGKVLIWKEEN-GRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSD 122
Query: 126 GNISVFTATADGGWDTTRIDQAHPVGVTSVSWAPAMAPGALVGLGLLDPVQKLASCGCDN 185
           G +SV     +G      ID AH +GV S SWAPA         G  +  +K  + G DN
Sbjct: 123 GKVSVVEFKENGTTSPIIID-AHAIGVNSASWAPATIEEDGEHNGTKES-RKFVTGGADN 180
Query: 186 TVKVWKMYNGIWKMDCFPALQMHSDWVRSVAWAPNLGLPKSTIASASQDGTVVIWTCAKE 245
            VK+WK  +          L+ HSDWVR VAW+P + L +S +AS SQD T +IWT   E
Sbjct: 181 LVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTV-LLRSYLASVSQDRTCIIWTQDNE 239
Query: 246 GEQWEGRVLKDFKTP--VWSVSWSLTGNLLAVADANN-VTLWKEAVDGEWQ 293
              W+  +LK+ K P  +W  SWSL+GN+LA++  +N VTLWKE ++G+W+
Sbjct: 240 QGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKENLEGKWE 290

>pdb|2PM7|B Chain B, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE Copii Vesicular Coat, Selenomethionine Version Length = 297

Iteration: 1
 Score =  241 bits (615), Expect = 4e-64,   Method: Compositional matrix adjust.
 Identities = 136/291 (46%), Positives = 175/291 (60%), Gaps = 7/291 (2%)
Query: 6   IETGHEDTVHDVAMDFYGKRLATASSDSSIKIIGLSNSASQHLATLKGHRGPVWQVAWAH 65
           I   H + +HD   D+YGKR AT SSD +IKI  +     + + TL GH GPVW+V WAH
Sbjct: 4   IANAHNEXIHDAVXDYYGKRXATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAH 63
Query: 66  PKFGSILASCSYDGQVIIWKEGNQNDWTQAHTFNDHKSSVNSIAWAPHELGLSLACGSSD 125
           PKFG+ILASCSYDG+V IWKE N   W+Q      H +SVNS+ WAPHE G  L   SSD
Sbjct: 64  PKFGTILASCSYDGKVXIWKEEN-GRWSQIAVHAVHSASVNSVQWAPHEYGPXLLVASSD 122
Query: 126 GNISVFTATADGGWDTTRIDQAHPVGVTSVSWAPAMAPGALVGLGLLDPVQKLASCGCDN 185
           G +SV     +G      ID AH +GV S SWAPA         G  +  +K  + G DN
Sbjct: 123 GKVSVVEFKENGTTSPIIID-AHAIGVNSASWAPATIEEDGEHNGTKES-RKFVTGGADN 180
Query: 186 TVKVWKMYNGIWKMDCFPALQMHSDWVRSVAWAPNLGLPKSTIASASQDGTVVIWTCAKE 245
            VK+WK  +          L+ HSDWVR VAW+P + L +S  AS SQD T +IWT   E
Sbjct: 181 LVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTV-LLRSYXASVSQDRTCIIWTQDNE 239
Query: 246 GEQWEGRVLKDFKTP--VWSVSWSLTGNLLAVADANN-VTLWKEAVDGEWQ 293
              W+  +LK+ K P  +W  SWSL+GN+LA++  +N VTLWKE ++G+W+
Sbjct: 240 QGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKENLEGKWE 290

>pdb|3EWE|A Chain A, Crystal Structure Of The Nup85SEH1 COMPLEX Length = 349

Iteration: 1
 Score =  125 bits (314), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 101/361 (27%), Positives = 155/361 (42%), Gaps = 77/361 (21%)
Query: 4   QKIETGHEDTVHDVAMDFYGKRLATASSDSSIKIIGLSNSAS--QHLATLKGHRGPVWQV 61
           Q  ++GH+D VHDV  DFYG+ +AT SSD  IK+  L    S  +   + + H   +  +
Sbjct: 2   QPFDSGHDDLVHDVVYDFYGRHVATCSSDQHIKVFKLDKDTSNWELSDSWRAHDSSIVAI 61
Query: 62  AWAHPKFGSILASCSYDGQVIIWKEGNQND------WTQAHTFNDHKSSVNSIAWAPHEL 115
            WA P++G I+AS SYD  V +W+E    +      W +  T ND K S+ S+ +AP  L
Sbjct: 62  DWASPEYGRIIASASYDKTVKLWEEDPDQEECSGRRWNKLCTLNDSKGSLYSVKFAPAHL 121
Query: 116 GLSLACGSSDGNISVFTATADG---GWDTTRIDQA-------HPVGVTSVSWAPA-MAPG 164
           GL LAC  +DG + ++ A        W  T   +        H      +SW P+  +P 
Sbjct: 122 GLKLACLGNDGILRLYDALEPSDLRSWTLTSEMKVLSIPPANHLQSDFCLSWCPSRFSP- 180
Query: 165 ALVGLGLLDPVQKLASCGCDNTVKVWKMYNGIWKMDCFPALQMHSDWVRSVAWAPNLGLP 224
                      +KLA    +  +   +  +G  K+     L  H   +RS++WAP++G  
Sbjct: 181 -----------EKLAVSALEQAIIYQRGKDG--KLHVAAKLPGHKSLIRSISWAPSIGRW 227
Query: 225 KSTIASASQDGTVVIWTCAK-------------------------------EGEQWEGRV 253
              IA+  +DG + I+   +                               +    E   
Sbjct: 228 YQLIATGCKDGRIRIFKITEKLSPLASEESLTNSNMFDNSADVDMDAQGRSDSNTEEKAE 287
Query: 254 LK------------DFKTPVWSVSWSLTGNLLAVA-DANNVTLWKEAVDGEWQQVSVVEP 300
           L+            D    VWSVSW+LTG +L+ A D   V LWK     E++ +SV+  
Sbjct: 288 LQSNLQVELLSEHDDHNGEVWSVSWNLTGTILSSAGDDGKVRLWKATYSNEFKCMSVITA 347
Query: 301 Q 301
           Q
Sbjct: 348 Q 348

>pdb|3F3P|A Chain A, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1, Space Group P21212 Length = 351

Iteration: 1
 Score =  125 bits (314), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 101/361 (27%), Positives = 154/361 (42%), Gaps = 77/361 (21%)
Query: 4   QKIETGHEDTVHDVAMDFYGKRLATASSDSSIKIIGLSNSAS--QHLATLKGHRGPVWQV 61
           Q  ++GH+D VHDV  DFYG+ +AT SSD  IK+  L    S  +   + + H   +  +
Sbjct: 4   QPFDSGHDDLVHDVVYDFYGRHVATCSSDQHIKVFKLDKDTSNWELSDSWRAHDSSIVAI 63
Query: 62  AWAHPKFGSILASCSYDGQVIIWKEGNQND------WTQAHTFNDHKSSVNSIAWAPHEL 115
            WA P++G I+AS SYD  V +W+E    +      W +  T ND K S+ S+ +AP  L
Sbjct: 64  DWASPEYGRIIASASYDKTVKLWEEDPDQEECSGRRWNKLCTLNDSKGSLYSVKFAPAHL 123
Query: 116 GLSLACGSSDGNISVFTATADG---GWDTTRIDQA-------HPVGVTSVSWAPA-MAPG 164
           GL LAC  +DG + ++ A        W  T   +        H      +SW P+  +P 
Sbjct: 124 GLKLACLGNDGILRLYDALEPSDLRSWTLTSEXKVLSIPPANHLQSDFCLSWCPSRFSP- 182
Query: 165 ALVGLGLLDPVQKLASCGCDNTVKVWKMYNGIWKMDCFPALQMHSDWVRSVAWAPNLGLP 224
                      +KLA    +  +   +  +G  K+     L  H   +RS++WAP++G  
Sbjct: 183 -----------EKLAVSALEQAIIYQRGKDG--KLHVAAKLPGHKSLIRSISWAPSIGRW 229
Query: 225 KSTIASASQDGTVVIWTCAKE----------------------GEQWEGRV--------- 253
              IA+  +DG + I+   ++                          +GR          
Sbjct: 230 YQLIATGCKDGRIRIFKITEKLSPLASEESLTNSNXFDNSADVDXDAQGRSDSNTEEKAE 289
Query: 254 ------------LKDFKTPVWSVSWSLTGNLLAVA-DANNVTLWKEAVDGEWQQVSVVEP 300
                         D    VWSVSW+LTG +L+ A D   V LWK     E++  SV+  
Sbjct: 290 LQSNLQVELLSEHDDHNGEVWSVSWNLTGTILSSAGDDGKVRLWKATYSNEFKCXSVITA 349
Query: 301 Q 301
           Q
Sbjct: 350 Q 350

>pdb|3F3F|A Chain A, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1, Space Group P21 Length = 351

Iteration: 1
 Score =  125 bits (313), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 101/361 (27%), Positives = 155/361 (42%), Gaps = 77/361 (21%)
Query: 4   QKIETGHEDTVHDVAMDFYGKRLATASSDSSIKIIGLSNSAS--QHLATLKGHRGPVWQV 61
           Q  ++GH+D VHDV  DFYG+ +AT SSD  IK+  L    S  +   + + H   +  +
Sbjct: 4   QPFDSGHDDLVHDVVYDFYGRHVATCSSDQHIKVFKLDKDTSNWELSDSWRAHDSSIVAI 63
Query: 62  AWAHPKFGSILASCSYDGQVIIWKEGNQND------WTQAHTFNDHKSSVNSIAWAPHEL 115
            WA P++G I+AS SYD  V +W+E    +      W +  T ND K S+ S+ +AP  L
Sbjct: 64  DWASPEYGRIIASASYDKTVKLWEEDPDQEECSGRRWNKLCTLNDSKGSLYSVKFAPAHL 123
Query: 116 GLSLACGSSDGNISVFTATADG---GWDTTRIDQA-------HPVGVTSVSWAPA-MAPG 164
           GL LAC  +DG + ++ A        W  T   +        H      +SW P+  +P 
Sbjct: 124 GLKLACLGNDGILRLYDALEPSDLRSWTLTSEMKVLSIPPANHLQSDFCLSWCPSRFSP- 182
Query: 165 ALVGLGLLDPVQKLASCGCDNTVKVWKMYNGIWKMDCFPALQMHSDWVRSVAWAPNLGLP 224
                      +KLA    +  +   +  +G  K+     L  H   +RS++WAP++G  
Sbjct: 183 -----------EKLAVSALEQAIIYQRGKDG--KLHVAAKLPGHKSLIRSISWAPSIGRW 229
Query: 225 KSTIASASQDGTVVIWTCAK-------------------------------EGEQWEGRV 253
              IA+  +DG + I+   +                               +    E   
Sbjct: 230 YQLIATGCKDGRIRIFKITEKLSPLASEESLTNSNMFDNSADVDMDAQGRSDSNTEEKAE 289
Query: 254 LK------------DFKTPVWSVSWSLTGNLLAVA-DANNVTLWKEAVDGEWQQVSVVEP 300
           L+            D    VWSVSW+LTG +L+ A D   V LWK     E++ +SV+  
Sbjct: 290 LQSNLQVELLSEHDDHNGEVWSVSWNLTGTILSSAGDDGKVRLWKATYSNEFKCMSVITA 349
Query: 301 Q 301
           Q
Sbjct: 350 Q 350

>pdb|2YMU|A Chain A, Structure Of A Highly Repetitive Propeller Structure Length = 577

Iteration: 1
 Score = 85.5 bits (210), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 90/280 (32%), Positives = 123/280 (43%), Gaps = 43/280 (15%)
Query: 8   TGHEDTVHDVAMDFYGKRLATASSDSSIKIIGLSNSASQHLATLKGHRGPVWQVAWAHPK 67
           TGH  +V  VA    G+ +A+AS D ++K   L N   QHL TL GH   VW VA++   
Sbjct: 300 TGHSSSVWGVAFSPDGQTIASASDDKTVK---LWNRNGQHLQTLTGHSSSVWGVAFSPD- 355
Query: 68  FGSILASCSYDGQVIIWKEGNQNDWTQAHTFNDHKSSVNSIAWAPHELGLSLACGSSDGN 127
            G  +AS S D  V +W    Q       T   H SSV  +A++P   G ++A  S D  
Sbjct: 356 -GQTIASASDDKTVKLWNRNGQ----LLQTLTGHSSSVRGVAFSPD--GQTIASASDDKT 408
Query: 128 ISVFTATADGGWDTTRIDQAHPVGVTSVSWAPAMAPGALVGLGLLDPVQKLASCGCDNTV 187
           + +        W+          G +S  W  A +P            Q +AS   D TV
Sbjct: 409 VKL--------WNRNGQLLQTLTGHSSSVWGVAFSP----------DDQTIASASDDKTV 450
Query: 188 KVWKMYNGIWKMDCFPALQMHSDWVRSVAWAPNLGLPKSTIASASQDGTVVIWTCAKEGE 247
           K+W   NG         L  HS  VR VA++P+      TIASAS D TV +W   + G+
Sbjct: 451 KLWN-RNG----QLLQTLTGHSSSVRGVAFSPD----GQTIASASDDKTVKLWN--RNGQ 499
Query: 248 QWEGRVLKDFKTPVWSVSWSLTGNLLAVA-DANNVTLWKE 286
             +   L    + V  V++S  G  +A A D   V LW  
Sbjct: 500 LLQ--TLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNR 537

>pdb|2HES|X Chain X, Cytosolic Iron-sulphur Assembly Protein- 1 Length = 330

Iteration: 1
 Score = 79.0 bits (193), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 83/289 (28%), Positives = 126/289 (43%), Gaps = 36/289 (12%)
Query: 18  AMDFYGKRLATASSDSSIKIIGLSNSASQHLATLK--GHRGPVWQVAWAHPKFGSILASC 75
           + DF    LAT S+D  IK++ +       +  L    H+  +  VAW  P   S+LA+ 
Sbjct: 19  SFDFSQGILATGSTDRKIKLVSVKYDDFTLIDVLDETAHKKAIRSVAW-RPH-TSLLAAG 76
Query: 76  SYDGQVIIWKEGNQNDWTQAHTF----NDHKSSVNSIAWAPHELGLSLACGSSDGNISVF 131
           S+D  V IW +    D T           H++ V  +AW+    G  LA  S D ++ ++
Sbjct: 77  SFDSTVSIWAKEESADRTFEMDLLAIIEGHENEVKGVAWSND--GYYLATCSRDKSVWIW 134
Query: 132 TATADGG-WDTTRIDQAHPVGVTSVSWAPAMAPGALVGLGLLDPVQKLASCGCDNTVKVW 190
                G  ++   + Q H   V  V W P+ A               LAS   D+TV++W
Sbjct: 135 ETDESGEEYECISVLQEHSQDVKHVIWHPSEAL--------------LASSSYDDTVRIW 180
Query: 191 KMYNGIWKMDCFPALQMHSDWVRSVAWAPNLGLPKSTIASASQDGTVVIWTCAKEGE--- 247
           K Y+  W  +C   L  H   V S  +    G+ +  + S S D TV +W    + E   
Sbjct: 181 KDYDDDW--ECVAVLNGHEGTVWSSDFDKTEGVFR--LCSGSDDSTVRVWKYMGDDEDDQ 236
Query: 248 -QWEGR-VLKDF-KTPVWSVSWSLTGNLLAVADANNVTLWKEAVDGEWQ 293
            +W    +L D  K  V++V+W   G L+A   A+ V    E VDGEW+
Sbjct: 237 QEWVCEAILPDVHKRQVYNVAWGFNG-LIASVGADGVLAVYEEVDGEWK 284

>pdb|2HES|X Chain X, Cytosolic Iron-sulphur Assembly Protein- 1 Length = 330

Iteration: 1
 Score = 57.0 bits (136), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 54/189 (28%), Positives = 92/189 (48%), Gaps = 31/189 (16%)
Query: 119 LACGSSDGNISVFTATADGGWDTTRID----QAHPVGVTSVSWAPAMAPGALVGLGLLDP 174
           LA GS+D  I + +   D   D T ID     AH   + SV+W P  +            
Sbjct: 27  LATGSTDRKIKLVSVKYD---DFTLIDVLDETAHKKAIRSVAWRPHTSL----------- 72
Query: 175 VQKLASCGCDNTVKVW---KMYNGIWKMDCFPALQMHSDWVRSVAWAPNLGLPKSTIASA 231
              LA+   D+TV +W   +  +  ++MD    ++ H + V+ VAW+ +       +A+ 
Sbjct: 73  ---LAAGSFDSTVSIWAKEESADRTFEMDLLAIIEGHENEVKGVAWSND----GYYLATC 125
Query: 232 SQDGTVVIWTCAKEGEQWEG-RVLKDFKTPVWSVSWSLTGNLLAVADANN-VTLWKEAVD 289
           S+D +V IW   + GE++E   VL++    V  V W  +  LLA +  ++ V +WK+  D
Sbjct: 126 SRDKSVWIWETDESGEEYECISVLQEHSQDVKHVIWHPSEALLASSSYDDTVRIWKD-YD 184
Query: 290 GEWQQVSVV 298
            +W+ V+V+
Sbjct: 185 DDWECVAVL 193

>pdb|3FM0|A Chain A, Crystal Structure Of Wd40 Protein Ciao1 Length = 345

Iteration: 1
 Score = 78.6 bits (192), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 70/249 (28%), Positives = 107/249 (42%), Gaps = 39/249 (15%)
Query: 6   IETGHEDTVHDVAMDFYGKRLATASSDSSIKIIGLSNSASQHLATLKGHRGPVWQVAWAH 65
           +  GH+ TV  VA    G  LA+AS D++  I   +    + + TL+GH   V  VAWA 
Sbjct: 56  LSEGHQRTVRKVAWSPCGNYLASASFDATTCIWKKNQDDFECVTTLEGHENEVKSVAWA- 114
Query: 66  PKFGSILASCSYDGQVIIWKEGNQNDWTQAHTFNDHKSSVNSIAWAP-HELGLSLACGSS 124
              G++LA+CS D  V +W+   ++++      N H   V  + W P  EL   LA  S 
Sbjct: 115 -PSGNLLATCSRDKSVWVWEVDEEDEYECVSVLNSHTQDVKHVVWHPSQEL---LASASY 170
Query: 125 DGNISVFTATADGGWDTTRIDQAHPVGVTSVSWAPAMAPGALVGLGLLDPVQKLASCGCD 184
           D  + ++    D  W      + H     S  W+ A  P            Q+LASC  D
Sbjct: 171 DDTVKLYREEED-DWVCCATLEGH----ESTVWSLAFDPSG----------QRLASCSDD 215
Query: 185 NTVKVWKMY-----NGI--------WKMDCFPALQMHSDWVRSVAWAPNLGLPKSTIASA 231
            TV++W+ Y      G+        WK  C  +   HS  +  +AW    G     +A+A
Sbjct: 216 RTVRIWRQYLPGNEQGVACSGSDPSWKCICTLS-GFHSRTIYDIAWCQLTG----ALATA 270
Query: 232 SQDGTVVIW 240
             D  + ++
Sbjct: 271 CGDDAIRVF 279

>pdb|3FM0|A Chain A, Crystal Structure Of Wd40 Protein Ciao1 Length = 345

Iteration: 1
 Score = 72.0 bits (175), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 73/244 (29%), Positives = 119/244 (48%), Gaps = 32/244 (13%)
Query: 58  VWQVAWAHPKFGSILASCSYDGQVIIWKEGNQND-WTQAHTFND-HKSSVNSIAWAPHEL 115
            W +AW +P  G++LASC  D ++ IW  G + D W      ++ H+ +V  +AW+P   
Sbjct: 19  CWFLAW-NPA-GTLLASCGGDRRIRIW--GTEGDSWICKSVLSEGHQRTVRKVAWSP--C 72
Query: 116 GLSLACGSSDGNISVFTATADGGWDTTRIDQAHPVGVTSVSWAPAMAPGALVGLGLLDPV 175
           G  LA  S D    ++    D     T + + H   V SV+WAP+   G L         
Sbjct: 73  GNYLASASFDATTCIWKKNQDDFECVTTL-EGHENEVKSVAWAPS---GNL--------- 119
Query: 176 QKLASCGCDNTVKVWKMYNGIWKMDCFPALQMHSDWVRSVAWAPNLGLPKSTIASASQDG 235
             LA+C  D +V VW++     + +C   L  H+  V+ V W P+  L    +ASAS D 
Sbjct: 120 --LATCSRDKSVWVWEVDEED-EYECVSVLNSHTQDVKHVVWHPSQEL----LASASYDD 172
Query: 236 TVVIWTCAKEGEQWE-GRVLKDFKTPVWSVSWSLTGNLLA-VADANNVTLWKEAVDGEWQ 293
           TV ++   +E + W     L+  ++ VWS+++  +G  LA  +D   V +W++ + G  Q
Sbjct: 173 TVKLYR--EEEDDWVCCATLEGHESTVWSLAFDPSGQRLASCSDDRTVRIWRQYLPGNEQ 230
Query: 294 QVSV 297
            V+ 
Sbjct: 231 GVAC 234

>pdb|1VYH|C Chain C, Paf-Ah Holoenzyme: Lis1ALFA2 Length = 410

Iteration: 1
 Score = 62.0 bits (149), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 64/228 (28%), Positives = 101/228 (44%), Gaps = 35/228 (15%)
Query: 51  LKGHRGPVWQVAWAHPKFGSILASCSYDGQVIIWKEGNQNDWTQAHTFNDHKSSVNSIAW 110
           L GHR PV +V + HP F S++ S S D  + +W +    D+ +  T   H  SV  I++
Sbjct: 104 LSGHRSPVTRVIF-HPVF-SVMVSASEDATIKVW-DYETGDFER--TLKGHTDSVQDISF 158
Query: 111 APHELGLSLACGSSDGNISVFTATADGGWDTTRIDQAHPVGVTSVSWAPAMAPGALVGLG 170
                G  LA  S+D  I ++      G++  R    H   V+SVS  P           
Sbjct: 159 D--HSGKLLASCSADMTIKLWDFQ---GFECIRTMHGHDHNVSSVSIMPNG--------- 204
Query: 171 LLDPVQKLASCGCDNTVKVWKMYNGIWKMDCFPALQMHSDWVRSVAWAPNLGLPKSTIAS 230
                  + S   D T+K+W++  G     C      H +WVR V   PN     + IAS
Sbjct: 205 -----DHIVSASRDKTIKMWEVQTGY----CVKTFTGHREWVRMVR--PNQD--GTLIAS 251
Query: 231 ASQDGTVVIWTCAKEGEQWEGRVLKDFKTPVWSVSWSLTGNLLAVADA 278
            S D TV +W  A +  + E   L++ +  V  +SW+   +  ++++A
Sbjct: 252 CSNDQTVRVWVVATKECKAE---LREHRHVVECISWAPESSYSSISEA 296

>pdb|3MKS|B Chain B, Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH AN ALLOSTERIC Inhibitor Scf-I2 Length = 464

Iteration: 1
 Score = 54.3 bits (129), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 64/251 (25%), Positives = 101/251 (40%), Gaps = 35/251 (13%)
Query: 1   MPAQKIETGHEDTVHDVAMDFYGKRLATASSDSSIKIIGLSNSASQHLATLKGHRGPVWQ 60
           +P +    GH  +V    + F    + T + D  I++    N   + L  L GH G VW 
Sbjct: 111 VPQRTTLRGHMTSV-ITCLQFEDNYVITGADDKMIRVYDSINK--KFLLQLSGHDGGVWA 167
Query: 61  VAWAHPKFGSILASCSYDGQVIIW--KEGNQNDWTQAHTFNDHKSSVNSIAWAPHELGLS 118
           + +AH   G IL S S D  V +W  K+G        H F  H S+V  +    ++    
Sbjct: 168 LKYAH---GGILVSGSTDRTVRVWDIKKG-----CCTHVFEGHNSTVRCLDIVEYKNIKY 219
Query: 119 LACGSSDGNISVFTATADGGWDTTRIDQAHPVGVTSVSWAPAMAPGALVGL--GLLDPVQ 176
           +  GS D  + V+    +        +  +P+    V   P   P   VG+  G +  V+
Sbjct: 220 IVTGSRDNTLHVWKLPKESSVPDHGEEHDYPL----VFHTPEENP-YFVGVLRGHMASVR 274
Query: 177 KLASCG-------CDNTVKVWKMYNGIWKMDCFPALQMHSDWVRSVAWAPNLGLPKSTIA 229
            ++  G        DNT+ VW     + +M C   L  H+D + S  +       +    
Sbjct: 275 TVSGHGNIVVSGSYDNTLIVWD----VAQMKCLYILSGHTDRIYSTIYDH----ERKRCI 326
Query: 230 SASQDGTVVIW 240
           SAS D T+ IW
Sbjct: 327 SASMDTTIRIW 337

>pdb|4GGA|A Chain A, Structural Analysis Of Human Cdc20 Supports Multi-Site Degron Recognition By ApcC Length = 420

Iteration: 1
 Score = 52.8 bits (125), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 57/201 (28%), Positives = 89/201 (44%), Gaps = 28/201 (13%)
Query: 44  ASQHLATLKGHRGPVWQVAWAHPKFGSILASCSYDGQVIIWKEG-NQNDWTQAHTFNDHK 102
           A  H+ATL GH   V  + WA    G  LAS   D  V +W     +  W    TF  H+
Sbjct: 219 AEHHVATLSGHSQEVCGLRWA--PDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQ 276
Query: 103 SSVNSIAWAPHELG-LSLACGSSDGNISVFTATADGGWDTTRIDQAHPVGVTSVSWAPAM 161
            +V ++AW P +   L+   G+SD +I ++   +  G   + +D AH   V S+ W+P  
Sbjct: 277 GAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCS--GACLSAVD-AHS-QVCSILWSPHY 332
Query: 162 APGALVGLGLLDPVQKLASCGCDNTVKVWKMYNGIWKMDCFPALQMHSDWVRSVAWAPNL 221
               + G G              N + +WK       M     L+ H+  V S+  +P+ 
Sbjct: 333 KE-LISGHGF-----------AQNQLVIWKYPT----MAKVAELKGHTSRVLSLTMSPD- 375
Query: 222 GLPKSTIASASQDGTVVIWTC 242
               +T+ASA+ D T+ +W C
Sbjct: 376 ---GATVASAAADETLRLWRC 393

>pdb|4GGD|A Chain A, Structural Analysis Of Human Cdc20 Supports Multisite Degron Recognition By ApcC. Length = 431

Iteration: 1
 Score = 52.8 bits (125), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 57/201 (28%), Positives = 89/201 (44%), Gaps = 28/201 (13%)
Query: 44  ASQHLATLKGHRGPVWQVAWAHPKFGSILASCSYDGQVIIWKEG-NQNDWTQAHTFNDHK 102
           A  H+ATL GH   V  + WA    G  LAS   D  V +W     +  W    TF  H+
Sbjct: 230 AEHHVATLSGHSQEVCGLRWA--PDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQ 287
Query: 103 SSVNSIAWAPHELG-LSLACGSSDGNISVFTATADGGWDTTRIDQAHPVGVTSVSWAPAM 161
            +V ++AW P +   L+   G+SD +I ++   +  G   + +D AH   V S+ W+P  
Sbjct: 288 GAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCS--GACLSAVD-AHS-QVCSILWSPHY 343
Query: 162 APGALVGLGLLDPVQKLASCGCDNTVKVWKMYNGIWKMDCFPALQMHSDWVRSVAWAPNL 221
               + G G              N + +WK       M     L+ H+  V S+  +P+ 
Sbjct: 344 KE-LISGHGF-----------AQNQLVIWKYPT----MAKVAELKGHTSRVLSLTMSPD- 386
Query: 222 GLPKSTIASASQDGTVVIWTC 242
               +T+ASA+ D T+ +W C
Sbjct: 387 ---GATVASAAADETLRLWRC 404

>pdb|4GGC|A Chain A, Structural Analysis Of Human Cdc20 Supports Multi-Site Degron Recognition By ApcC Length = 318

Iteration: 1
 Score = 52.0 bits (123), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 57/201 (28%), Positives = 89/201 (44%), Gaps = 28/201 (13%)
Query: 44  ASQHLATLKGHRGPVWQVAWAHPKFGSILASCSYDGQVIIWKEG-NQNDWTQAHTFNDHK 102
           A  H+ATL GH   V  + WA    G  LAS   D  V +W     +  W    TF  H+
Sbjct: 139 AEHHVATLSGHSQEVCGLRWA--PDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQ 196
Query: 103 SSVNSIAWAPHELG-LSLACGSSDGNISVFTATADGGWDTTRIDQAHPVGVTSVSWAPAM 161
            +V ++AW P +   L+   G+SD +I ++   +  G   + +D AH   V S+ W+P  
Sbjct: 197 GAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCS--GACLSAVD-AHS-QVCSILWSPHY 252
Query: 162 APGALVGLGLLDPVQKLASCGCDNTVKVWKMYNGIWKMDCFPALQMHSDWVRSVAWAPNL 221
               + G G              N + +WK       M     L+ H+  V S+  +P+ 
Sbjct: 253 KE-LISGHGF-----------AQNQLVIWKYPT----MAKVAELKGHTSRVLSLTMSPD- 295
Query: 222 GLPKSTIASASQDGTVVIWTC 242
               +T+ASA+ D T+ +W C
Sbjct: 296 ---GATVASAAADETLRLWRC 313

>pdb|1P22|A Chain A, Structure Of A Beta-Trcp1-Skp1-Beta-Catenin Complex: Destruction Motif Binding And Lysine Specificity On The Scfbeta-Trcp1 Ubiquitin Ligase Length = 435

Iteration: 1
 Score = 51.2 bits (121), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 49/241 (20%), Positives = 98/241 (40%), Gaps = 43/241 (17%)
Query: 1   MPAQKIETGHEDTVHDVAMDFYGKRLATASSDSSIKIIGLSNSASQHLATLKGHRGPVWQ 60
           +  ++I TGH  +V  + + +  + + T SSDS++++  ++    + L TL  H   V  
Sbjct: 163 LECKRILTGHTGSV--LCLQYDERVIITGSSDSTVRVWDVN--TGEMLNTLIHHCEAVL- 217
Query: 61  VAWAHPKFGS-ILASCSYDGQVIIWKEGNQNDWTQAHTFNDHKSSVNSIAWAPHELGLSL 119
               H +F + ++ +CS D  + +W   +  D T       H+++VN + +        +
Sbjct: 218 ----HLRFNNGMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFDDK----YI 269
Query: 120 ACGSSDGNISVFTATADGGWDTTRIDQAHPVGVTSVSWAPAMAPGALVGLGLLDPVQKLA 179
              S D  I V+  +     +  R    H  G+  + +   +                + 
Sbjct: 270 VSASGDRTIKVWNTST---CEFVRTLNGHKRGIACLQYRDRL----------------VV 310
Query: 180 SCGCDNTVKVWKMYNGIWKMDCFPALQMHSDWVRSVAWAPNLGLPKSTIASASQDGTVVI 239
           S   DNT+++W +  G     C   L+ H + VR + +          I S + DG + +
Sbjct: 311 SGSSDNTIRLWDIECGA----CLRVLEGHEELVRCIRF------DNKRIVSGAYDGKIKV 360
Query: 240 W 240
           W
Sbjct: 361 W 361

>pdb|2XYI|A Chain A, Crystal Structure Of Nurf55 In Complex With A H4 Peptide Length = 430

Iteration: 1
 Score = 51.2 bits (121), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 57/240 (23%), Positives = 96/240 (40%), Gaps = 47/240 (19%)
Query: 26  LATASSDSSIKIIGLSNSASQHLAT-----LKGHRGPVWQVAWAHPKFGSILASCSYDGQ 80
           L +AS D +I +  ++ +  +H          GH   V  VAW H    S+  S + D +
Sbjct: 197 LLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAW-HLLHESLFGSVADDQK 255
Query: 81  VIIWKEGNQNDWTQAHTFNDHKSSVNSIAWAPHELGLSLACGSSDGNISVFTATADGGWD 140
           ++IW   N N    +HT + H + VN +++ P+   + LA GS+D  +++        WD
Sbjct: 256 LMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFI-LATGSADKTVAL--------WD 306
Query: 141 TTRID------QAHPVGVTSVSWAPAMAPGALVGLGLLDPVQKLASCGCDNTVKVWKMYN 194
              +       ++H   +  V W+P                  LAS G D  + VW +  
Sbjct: 307 LRNLKLKLHSFESHKDEIFQVQWSPHNE-------------TILASSGTDRRLHVWDLSK 353
Query: 195 GIWKM------DCFPALQM----HSDWVRSVAWAPNLGLPKSTIASASQDGTVVIWTCAK 244
              +       D  P L      H+  +   +W PN       I S S+D  + +W  A+
Sbjct: 354 IGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPN---EPWIICSVSEDNIMQVWQMAE 410

>pdb|3C99|A Chain A, Structural Basis Of Histone H4 Recognition By P55 Length = 432

Iteration: 1
 Score = 51.2 bits (121), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 57/240 (23%), Positives = 96/240 (40%), Gaps = 47/240 (19%)
Query: 26  LATASSDSSIKIIGLSNSASQHLAT-----LKGHRGPVWQVAWAHPKFGSILASCSYDGQ 80
           L +AS D +I +  ++ +  +H          GH   V  VAW H    S+  S + D +
Sbjct: 199 LLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAW-HLLHESLFGSVADDQK 257
Query: 81  VIIWKEGNQNDWTQAHTFNDHKSSVNSIAWAPHELGLSLACGSSDGNISVFTATADGGWD 140
           ++IW   N N    +HT + H + VN +++ P+   + LA GS+D  +++        WD
Sbjct: 258 LMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFI-LATGSADKTVAL--------WD 308
Query: 141 TTRID------QAHPVGVTSVSWAPAMAPGALVGLGLLDPVQKLASCGCDNTVKVWKMYN 194
              +       ++H   +  V W+P                  LAS G D  + VW +  
Sbjct: 309 LRNLKLKLHSFESHKDEIFQVQWSPHNE-------------TILASSGTDRRLHVWDLSK 355
Query: 195 GIWKM------DCFPALQM----HSDWVRSVAWAPNLGLPKSTIASASQDGTVVIWTCAK 244
              +       D  P L      H+  +   +W PN       I S S+D  + +W  A+
Sbjct: 356 IGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPN---EPWIICSVSEDNIMQVWQMAE 412

>pdb|1NEX|B Chain B, Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Complex Length = 464

Iteration: 1
 Score = 51.2 bits (121), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 63/251 (25%), Positives = 99/251 (39%), Gaps = 35/251 (13%)
Query: 1   MPAQKIETGHEDTVHDVAMDFYGKRLATASSDSSIKIIGLSNSASQHLATLKGHRGPVWQ 60
           +P +    GH  +V    + F    + T + D  I++    N   + L  L GH G VW 
Sbjct: 111 VPQRTTLRGHXTSV-ITCLQFEDNYVITGADDKXIRVYDSINK--KFLLQLSGHDGGVWA 167
Query: 61  VAWAHPKFGSILASCSYDGQVIIW--KEGNQNDWTQAHTFNDHKSSVNSIAWAPHELGLS 118
           + +AH   G IL S S D  V +W  K+G        H F  H S+V  +    ++    
Sbjct: 168 LKYAH---GGILVSGSTDRTVRVWDIKKG-----CCTHVFEGHNSTVRCLDIVEYKNIKY 219
Query: 119 LACGSSDGNISVFTATADGGWDTTRIDQAHPVGVTSVSWAPAMAPGALVGL--GLLDPVQ 176
           +  GS D  + V+    +        +  +P+    V   P   P   VG+  G    V+
Sbjct: 220 IVTGSRDNTLHVWKLPKESSVPDHGEEHDYPL----VFHTPEENP-YFVGVLRGHXASVR 274
Query: 177 KLASCG-------CDNTVKVWKMYNGIWKMDCFPALQMHSDWVRSVAWAPNLGLPKSTIA 229
            ++  G        DNT+ VW     + +  C   L  H+D + S  +       +    
Sbjct: 275 TVSGHGNIVVSGSYDNTLIVWD----VAQXKCLYILSGHTDRIYSTIYDH----ERKRCI 326
Query: 230 SASQDGTVVIW 240
           SAS D T+ IW
Sbjct: 327 SASXDTTIRIW 337

>pdb|2YBA|A Chain A, Crystal Structure Of Nurf55 In Complex With Histone H3 Length = 422

Iteration: 1
 Score = 51.2 bits (121), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 57/240 (23%), Positives = 96/240 (40%), Gaps = 47/240 (19%)
Query: 26  LATASSDSSIKIIGLSNSASQHLAT-----LKGHRGPVWQVAWAHPKFGSILASCSYDGQ 80
           L +AS D +I +  ++ +  +H          GH   V  VAW H    S+  S + D +
Sbjct: 201 LLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAW-HLLHESLFGSVADDQK 259
Query: 81  VIIWKEGNQNDWTQAHTFNDHKSSVNSIAWAPHELGLSLACGSSDGNISVFTATADGGWD 140
           ++IW   N N    +HT + H + VN +++ P+   + LA GS+D  +++        WD
Sbjct: 260 LMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFI-LATGSADKTVAL--------WD 310
Query: 141 TTRID------QAHPVGVTSVSWAPAMAPGALVGLGLLDPVQKLASCGCDNTVKVWKMYN 194
              +       ++H   +  V W+P                  LAS G D  + VW +  
Sbjct: 311 LRNLKLKLHSFESHKDEIFQVQWSPHNE-------------TILASSGTDRRLHVWDLSK 357
Query: 195 GIWKM------DCFPALQM----HSDWVRSVAWAPNLGLPKSTIASASQDGTVVIWTCAK 244
              +       D  P L      H+  +   +W PN       I S S+D  + +W  A+
Sbjct: 358 IGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPN---EPWIICSVSEDNIMQVWQMAE 414

>pdb|2OVP|B Chain B, Structure Of The Skp1-Fbw7 Complex Length = 445

Iteration: 1
 Score = 49.3 bits (116), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 64/240 (26%), Positives = 101/240 (42%), Gaps = 44/240 (18%)
Query: 9   GHEDTVHDVAMDFYGKRLATASSDSSIKIIGLSNSASQHLATLKGHRGPVWQVAWAHPKF 68
           GH  TV    M  + KR+ + S D+++++  +      H+  L GH   V  V +     
Sbjct: 197 GHTSTVR--CMHLHEKRVVSGSRDATLRVWDIETGQCLHV--LMGHVAAVRCVQYD---- 248
Query: 69  GSILASCSYDGQVIIWKEGNQNDWTQAHTFNDHKSSVNSIAWAPHELGLSLACGSSDGNI 128
           G  + S +YD  V +W    +   T  HT   H + V S+ +     G+ +  GS D +I
Sbjct: 249 GRRVVSGAYDFMVKVWDPETE---TCLHTLQGHTNRVYSLQFD----GIHVVSGSLDTSI 301
Query: 129 SVFTATADGGWDTTRIDQAHPV-GVTSVSWAPAMAPGALVGLGLLDPVQKLASCGCDNTV 187
            V        WD    +  H + G  S++           G+ L D +  L S   D+TV
Sbjct: 302 RV--------WDVETGNCIHTLTGHQSLT----------SGMELKDNI--LVSGNADSTV 341
Query: 188 KVWKMYNGIWKMDCFPALQMHSDWVRSVAWAPNLGLPKSTIASASQDGTVVIWTCAKEGE 247
           K+W +  G     C   LQ  +    +V     L   K+ + ++S DGTV +W   K GE
Sbjct: 342 KIWDIKTG----QCLQTLQGPNKHQSAVTC---LQFNKNFVITSSDDGTVKLWD-LKTGE 393

>pdb|3SFZ|A Chain A, Crystal Structure Of Full-Length Murine Apaf-1 Length = 1249

Iteration: 1
 Score = 48.9 bits (115), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 42/181 (23%), Positives = 73/181 (40%), Gaps = 24/181 (13%)
Query: 10  HEDTVHDVAMDFYGKRLATASSDSSIKIIGLSNSASQHLATLKGHRGPVWQVAWAHPKFG 69
           H D V+       G+R+A+  +D ++++        + L  +K H   V   A++     
Sbjct: 614 HTDAVYHACFSQDGQRIASCGADKTLQV--FKAETGEKLLDIKAHEDEVLCCAFSSD--D 669
Query: 70  SILASCSYDGQVIIWKEGNQNDWTQAHTFNDHKSSVNSIAWAPHELGLSLACGSSDGNIS 129
           S +A+CS D +V IW           HT+++H   VN   +      L LA GS+D  + 
Sbjct: 670 SYIATCSADKKVKIWDSATGK---LVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLK 726
Query: 130 VFTATADGGWDTTRIDQAHPVGVTSVSWAPAMAPGALVGLGLLDPVQKLASCGCDNTVKV 189
           ++        +T      H   V    ++P                + LASC  D T+++
Sbjct: 727 LWDLNQKECRNTMF---GHTNSVNHCRFSP--------------DDELLASCSADGTLRL 769
Query: 190 W 190
           W
Sbjct: 770 W 770

>pdb|3SHF|A Chain A, Crystal Structure Of The R265s Mutant Of Full-Length Murine Apaf-1 Length = 1256

Iteration: 1
 Score = 48.9 bits (115), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 42/181 (23%), Positives = 73/181 (40%), Gaps = 24/181 (13%)
Query: 10  HEDTVHDVAMDFYGKRLATASSDSSIKIIGLSNSASQHLATLKGHRGPVWQVAWAHPKFG 69
           H D V+       G+R+A+  +D ++++        + L  +K H   V   A++     
Sbjct: 621 HTDAVYHACFSQDGQRIASCGADKTLQV--FKAETGEKLLDIKAHEDEVLCCAFSSD--D 676
Query: 70  SILASCSYDGQVIIWKEGNQNDWTQAHTFNDHKSSVNSIAWAPHELGLSLACGSSDGNIS 129
           S +A+CS D +V IW           HT+++H   VN   +      L LA GS+D  + 
Sbjct: 677 SYIATCSADKKVKIWDSATGK---LVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLK 733
Query: 130 VFTATADGGWDTTRIDQAHPVGVTSVSWAPAMAPGALVGLGLLDPVQKLASCGCDNTVKV 189
           ++        +T      H   V    ++P                + LASC  D T+++
Sbjct: 734 LWDLNQKECRNTMF---GHTNSVNHCRFSP--------------DDELLASCSADGTLRL 776
Query: 190 W 190
           W
Sbjct: 777 W 777

>pdb|3IZ6|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into A 5.5 A Cryo-Em Map Of Triticum Aestivum Translating 80s Ribosome Length = 380

Iteration: 1
 Score = 48.5 bits (114), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 66/274 (24%), Positives = 107/274 (39%), Gaps = 59/274 (21%)
Query: 50  TLKGHRGPVWQVAWAHPKFGSILASCSYDGQVIIWKEGNQNDWTQAHTFNDHKSSVNSIA 109
           TL+GH G V+ + W   K  + + S S DG++I+W   N     + H    H   V   A
Sbjct: 61  TLQGHSGKVYSLDWTPEK--NWIVSASQDGRLIVW---NALTSQKTHAIKLHCPWVMECA 115
Query: 110 WAPHELGLSLACGSSDGNISVFT----ATADGGWDTTRIDQAHPVGVTSVSWAPAMAPGA 165
           +AP+  G S+ACG  D   S+F     A  DG    +R+   H    +S  + P      
Sbjct: 116 FAPN--GQSVACGGLDSACSIFNLSSQADRDGNMPVSRVLTGHKGYASSCQYVPDQETRL 173
Query: 166 LVGLGLLDPV-------QKLASCG----------------------------CDNTVKVW 190
           + G G    V       Q+++  G                            CD TV++W
Sbjct: 174 ITGSGDQTCVLWDVTTGQRISIFGSEFPSGHTADVLSLSINSLNANMFISGSCDTTVRLW 233
Query: 191 KMYNGIWKMDCFPALQMHSDWVRSVAWAPNLGLPKSTIASASQDGTVVIWTCAKEGEQWE 250
            +      +  +     H   + SV + P+         + S DGT  ++   + G Q +
Sbjct: 234 DLRITSRAVRTYHG---HEGDINSVKFFPD----GQRFGTGSDDGTCRLFD-MRTGHQLQ 285
Query: 251 GRVLK----DFKTP-VWSVSWSLTGNLLAVADAN 279
               +    D + P V SV++S++G LL    +N
Sbjct: 286 VYNREPDRNDNELPIVTSVAFSISGRLLFAGYSN 319

>pdb|2PBI|B Chain B, The Multifunctional Nature Of Gbeta5RGS9 REVEALED FROM ITS CRYSTAL Structure Length = 354

Iteration: 1
 Score = 48.1 bits (113), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 70/278 (25%), Positives = 103/278 (37%), Gaps = 72/278 (25%)
Query: 50  TLKGHRGPVWQVAWAHPKFGSILASCSYDGQVIIWKEGNQND---------WTQAHTFN- 99
           TLKGH   V  + W   K    + S S DG+VI+W     N          W  A  +  
Sbjct: 59  TLKGHGNKVLCMDWCKDK--RRIVSSSQDGKVIVWDSFTTNKEHAVTMPCTWVMACAYAP 116
Query: 100 ----------DHKSSVNSIAW-------------APHELGLSLACGSSDGNISVFTATAD 136
                     D+K SV  + +             A H   LS AC  ++ ++ + TA+ D
Sbjct: 117 SGCAIACGGLDNKCSVYPLTFDKNENMAAKKKSVAMHTNYLS-ACSFTNSDMQILTASGD 175
Query: 137 GG---WDTT-----RIDQAHPVGVTSVSWAPAMAPGALVGLGLLDPVQKLASCGCDNTVK 188
           G    WD       +    H   V  +  AP+      V            S GCD    
Sbjct: 176 GTCALWDVESGQLLQSFHGHGADVLCLDLAPSETGNTFV------------SGGCDKKAM 223
Query: 189 VWKMYNGIWKMDCFPALQMHSDWVRSVAWAPNLGLPKSTIASASQDGTVVIWTCAKEGEQ 248
           VW M +G     C  A + H   V SV + P+        AS S D T  ++    + E 
Sbjct: 224 VWDMRSG----QCVQAFETHESDVNSVRYYPS----GDAFASGSDDATCRLYDLRADREV 275
Query: 249 WEGRVLKDFKTPVW---SVSWSLTGNLLAVADANNVTL 283
                +   ++ ++   SV +SL+G LL  A  N+ T+
Sbjct: 276 ----AIYSKESIIFGASSVDFSLSGRLL-FAGYNDYTI 308

>pdb|3CFS|B Chain B, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH Histone H4 Length = 414

Iteration: 1
 Score = 48.1 bits (113), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 51/208 (24%), Positives = 85/208 (40%), Gaps = 30/208 (14%)
Query: 3   AQKIETGHEDTVHDVAMDFYGKRLATASSDSSIKII--GLSNSASQHLATLKGHRGPVWQ 60
           A+ I TGH   V DVA     + L  + +D    +I    SN+ S+    +  H   V  
Sbjct: 221 AKAIFTGHSAVVEDVAWHLLHESLFGSVADDQKLMIWDTRSNTTSKPSHLVDAHTAEVNC 280
Query: 61  VAWAHPKFGSILASCSYDGQVIIWKEGNQNDWTQAHTFNDHKSSVNSIAWAPHELGLSLA 120
           +++ +P    ILA+ S D  V +W   N     + HTF  HK  +  + W+PH   + LA
Sbjct: 281 LSF-NPYSEFILATGSADKTVALWDLRNLK--LKLHTFESHKDEIFQVHWSPHNETI-LA 336
Query: 121 CGSSDGNISVFTAT-----------ADGGWDTTRIDQAHPVGVTSVSWAPAMAPGALVGL 169
              +D  ++V+  +            DG  +   I   H   ++  SW P          
Sbjct: 337 SSGTDRRLNVWDLSKIGEEQSAEDAEDGPPELLFIHGGHTAKISDFSWNP---------- 386
Query: 170 GLLDPVQKLASCGCDNTVKVWKMYNGIW 197
              +    + S   DN +++W+M   I+
Sbjct: 387 ---NEPWVICSVSEDNIMQIWQMAENIY 411

>pdb|3CFS|B Chain B, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH Histone H4 Length = 414

Iteration: 1
 Score = 44.7 bits (104), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 51/205 (24%), Positives = 87/205 (42%), Gaps = 31/205 (15%)
Query: 51  LKGHRGPVWQVAWAHPKFGSILASCSYDGQVIIW------KEGNQNDWTQAHTFNDHKSS 104
           L+GH+   + ++W     G +L S S D  V +W      KEG   D      F  H + 
Sbjct: 175 LRGHQKEGYGLSWNSNLSGHLL-SASDDHTVCLWDINAGPKEGKIVDAKA--IFTGHSAV 231
Query: 105 VNSIAWAPHELGLSL-ACGSSDGNISVFTATADGGWDTTRIDQAHPVGVTSVSWAPAMAP 163
           V  +AW  H L  SL    + D  + ++   ++     + +  AH   V  +S+ P    
Sbjct: 232 VEDVAW--HLLHESLFGSVADDQKLMIWDTRSNTTSKPSHLVDAHTAEVNCLSFNPY--- 286
Query: 164 GALVGLGLLDPVQKLASCGCDNTVKVWKMYNGIWKMDCFPALQMHSDWVRSVAWAPNLGL 223
              +          LA+   D TV +W + N   K+  F   + H D +  V W+P+   
Sbjct: 287 SEFI----------LATGSADKTVALWDLRNLKLKLHTF---ESHKDEIFQVHWSPH--- 330
Query: 224 PKSTIASASQDGTVVIWTCAKEGEQ 248
            ++ +AS+  D  + +W  +K GE+
Sbjct: 331 NETILASSGTDRRLNVWDLSKIGEE 355

>pdb|4G56|B Chain B, Crystal Structure Of Full Length Prmt5/mep50 Complexes From Xenopus Laevis Length = 357

Iteration: 1
 Score = 47.4 bits (111), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 55/210 (26%), Positives = 86/210 (40%), Gaps = 26/210 (12%)
Query: 10  HEDTVHDVAMDFYGKRLATASSDSSIKIIGLSNSASQHLATLKGHRGPVWQVAWAHPKFG 69
           H+D V  +++   G +  +   D S+K+  LS  A   L +   H   V  VA A P   
Sbjct: 138 HDDIVKTLSVFSDGTQAVSGGKDFSVKVWDLSQKAV--LKSYNAHSSEVNCVA-ACPGKD 194
Query: 70  SILASCSYDGQVIIWKEGNQNDWTQAHTFNDHKSSVNSIAWAPHELGLSLACGSSDGNIS 129
           +I  SC  DG++++W        T+   F    +   S+ W P E   + ACG   GN+S
Sbjct: 195 TIFLSCGEDGRILLWDTRKPKPATRID-FCASDTIPTSVTWHP-EKDDTFACGDETGNVS 252
Query: 130 VFTATADGGWDTTRIDQAHPVGVTSVSWAPAMAPGALVGLGLLDPVQKLASCGCDNTVKV 189
           +         D+ +    H   +T ++++   +P              LAS   D TV V
Sbjct: 253 LVNIK---NPDSAQTSAVHSQNITGLAYSYHSSP-------------FLASISEDCTVAV 296
Query: 190 WKMYNGIWKMDCFPALQMHSDWVRSVAWAP 219
                     + F  L  H D+V  VAW+P
Sbjct: 297 LDADFS----EVFRDLS-HRDFVTGVAWSP 321

>pdb|1GG2|B Chain B, G Protein Heterotrimer Mutant Gi_alpha_1(G203a) Beta_1 Gamma_2 With Gdp Bound Length = 340

Iteration: 1
 Score = 47.0 bits (110), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 58/264 (21%), Positives = 99/264 (37%), Gaps = 45/264 (17%)
Query: 50  TLKGHRGPVWQVAWAHPKFGSILASCSYDGQVIIWKEGNQNDWTQAHTFNDHKSSVNSIA 109
           TL+GH   ++ + W       +L S S DG++IIW     N   + H      S V + A
Sbjct: 50  TLRGHLAKIYAMHWGTDS--RLLVSASQDGKLIIWDSYTTN---KVHAIPLRSSWVMTCA 104
Query: 110 WAPHELGLSLACGSSDGNISVFT-ATADGGWDTTRIDQAHPVGVTSVSW----------- 157
           +AP   G  +ACG  D   S++   T +G    +R    H   ++   +           
Sbjct: 105 YAPS--GNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSG 162
Query: 158 ----------------APAMAPGALVGLGLLDPVQKLASCGCDNTVKVWKMYNGIWKMDC 201
                                 G ++ L L    +   S  CD + K+W +  G+    C
Sbjct: 163 DTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGM----C 218
Query: 202 FPALQMHSDWVRSVAWAPNLGLPKSTIASASQDGTVVIWTCAKEGEQWEGRVLKDFKTPV 261
                 H   + ++ + PN     +  A+ S D T  ++   +  ++       +    +
Sbjct: 219 RQTFTGHESDINAICFFPN----GNAFATGSDDATCRLFD-LRADQELMTYSHDNIICGI 273
Query: 262 WSVSWSLTGN-LLAVADANNVTLW 284
            SVS+S +G  LLA  D  N  +W
Sbjct: 274 TSVSFSKSGRLLLAGYDDFNCNVW 297

>pdb|2BCJ|B Chain B, Crystal Structure Of G Protein-coupled Receptor Kinase 2 In Complex With Galpha-q And Gbetagamma Subunits Length = 340

Iteration: 1
 Score = 47.0 bits (110), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 58/264 (21%), Positives = 99/264 (37%), Gaps = 45/264 (17%)
Query: 50  TLKGHRGPVWQVAWAHPKFGSILASCSYDGQVIIWKEGNQNDWTQAHTFNDHKSSVNSIA 109
           TL+GH   ++ + W       +L S S DG++IIW     N   + H      S V + A
Sbjct: 50  TLRGHLAKIYAMHWGTDS--RLLVSASQDGKLIIWDSYTTN---KVHAIPLRSSWVMTCA 104
Query: 110 WAPHELGLSLACGSSDGNISVFT-ATADGGWDTTRIDQAHPVGVTSVSW----------- 157
           +AP   G  +ACG  D   S++   T +G    +R    H   ++   +           
Sbjct: 105 YAPS--GNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSG 162
Query: 158 ----------------APAMAPGALVGLGLLDPVQKLASCGCDNTVKVWKMYNGIWKMDC 201
                                 G ++ L L    +   S  CD + K+W +  G+    C
Sbjct: 163 DTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGM----C 218
Query: 202 FPALQMHSDWVRSVAWAPNLGLPKSTIASASQDGTVVIWTCAKEGEQWEGRVLKDFKTPV 261
                 H   + ++ + PN     +  A+ S D T  ++   +  ++       +    +
Sbjct: 219 RQTFTGHESDINAICFFPN----GNAFATGSDDATCRLFD-LRADQELMTYSHDNIICGI 273
Query: 262 WSVSWSLTGN-LLAVADANNVTLW 284
            SVS+S +G  LLA  D  N  +W
Sbjct: 274 TSVSFSKSGRLLLAGYDDFNCNVW 297

>pdb|3SN6|B Chain B, Crystal Structure Of The Beta2 Adrenergic Receptor-Gs Protein Complex Length = 351

Iteration: 1
 Score = 47.0 bits (110), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 58/264 (21%), Positives = 99/264 (37%), Gaps = 45/264 (17%)
Query: 50  TLKGHRGPVWQVAWAHPKFGSILASCSYDGQVIIWKEGNQNDWTQAHTFNDHKSSVNSIA 109
           TL+GH   ++ + W       +L S S DG++IIW     N   + H      S V + A
Sbjct: 61  TLRGHLAKIYAMHWGTDS--RLLVSASQDGKLIIWDSYTTN---KVHAIPLRSSWVMTCA 115
Query: 110 WAPHELGLSLACGSSDGNISVFT-ATADGGWDTTRIDQAHPVGVTSVSW----------- 157
           +AP   G  +ACG  D   S++   T +G    +R    H   ++   +           
Sbjct: 116 YAPS--GNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSG 173
Query: 158 ----------------APAMAPGALVGLGLLDPVQKLASCGCDNTVKVWKMYNGIWKMDC 201
                                 G ++ L L    +   S  CD + K+W +  G+    C
Sbjct: 174 DTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGM----C 229
Query: 202 FPALQMHSDWVRSVAWAPNLGLPKSTIASASQDGTVVIWTCAKEGEQWEGRVLKDFKTPV 261
                 H   + ++ + PN     +  A+ S D T  ++   +  ++       +    +
Sbjct: 230 RQTFTGHESDINAICFFPN----GNAFATGSDDATCRLFD-LRADQELMTYSHDNIICGI 284
Query: 262 WSVSWSLTGN-LLAVADANNVTLW 284
            SVS+S +G  LLA  D  N  +W
Sbjct: 285 TSVSFSKSGRLLLAGYDDFNCNVW 308

>pdb|1A0R|B Chain B, Heterotrimeric Complex Of PhosducinTRANSDUCIN BETA-Gamma Length = 340

Iteration: 1
 Score = 46.6 bits (109), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 58/264 (21%), Positives = 99/264 (37%), Gaps = 45/264 (17%)
Query: 50  TLKGHRGPVWQVAWAHPKFGSILASCSYDGQVIIWKEGNQNDWTQAHTFNDHKSSVNSIA 109
           TL+GH   ++ + W       +L S S DG++IIW     N   + H      S V + A
Sbjct: 50  TLRGHLAKIYAMHWGTDS--RLLLSASQDGKLIIWDSYTTN---KVHAIPLRSSWVMTCA 104
Query: 110 WAPHELGLSLACGSSDGNISVFT-ATADGGWDTTRIDQAHPVGVTSVSW----------- 157
           +AP   G  +ACG  D   S++   T +G    +R    H   ++   +           
Sbjct: 105 YAPS--GNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSG 162
Query: 158 ----------------APAMAPGALVGLGLLDPVQKLASCGCDNTVKVWKMYNGIWKMDC 201
                                 G ++ L L    +   S  CD + K+W +  G+    C
Sbjct: 163 DTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGM----C 218
Query: 202 FPALQMHSDWVRSVAWAPNLGLPKSTIASASQDGTVVIWTCAKEGEQWEGRVLKDFKTPV 261
                 H   + ++ + PN     +  A+ S D T  ++   +  ++       +    +
Sbjct: 219 RQTFTGHESDINAICFFPN----GNAFATGSDDATCRLFD-LRADQELMTYSHDNIICGI 273
Query: 262 WSVSWSLTGN-LLAVADANNVTLW 284
            SVS+S +G  LLA  D  N  +W
Sbjct: 274 TSVSFSKSGRLLLAGYDDFNCNVW 297

>pdb|1GOT|B Chain B, Heterotrimeric Complex Of A Gt-AlphaGI-Alpha Chimera And The Gt-Beta-Gamma Subunits Length = 340

Iteration: 1
 Score = 46.6 bits (109), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 58/264 (21%), Positives = 99/264 (37%), Gaps = 45/264 (17%)
Query: 50  TLKGHRGPVWQVAWAHPKFGSILASCSYDGQVIIWKEGNQNDWTQAHTFNDHKSSVNSIA 109
           TL+GH   ++ + W       +L S S DG++IIW     N   + H      S V + A
Sbjct: 50  TLRGHLAKIYAMHWGTDS--RLLLSASQDGKLIIWDSYTTN---KVHAIPLRSSWVMTCA 104
Query: 110 WAPHELGLSLACGSSDGNISVFT-ATADGGWDTTRIDQAHPVGVTSVSW----------- 157
           +AP   G  +ACG  D   S++   T +G    +R    H   ++   +           
Sbjct: 105 YAPS--GNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSG 162
Query: 158 ----------------APAMAPGALVGLGLLDPVQKLASCGCDNTVKVWKMYNGIWKMDC 201
                                 G ++ L L    +   S  CD + K+W +  G+    C
Sbjct: 163 DTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGM----C 218
Query: 202 FPALQMHSDWVRSVAWAPNLGLPKSTIASASQDGTVVIWTCAKEGEQWEGRVLKDFKTPV 261
                 H   + ++ + PN     +  A+ S D T  ++   +  ++       +    +
Sbjct: 219 RQTFTGHESDINAICFFPN----GNAFATGSDDATCRLFD-LRADQELMTYSHDNIICGI 273
Query: 262 WSVSWSLTGN-LLAVADANNVTLW 284
            SVS+S +G  LLA  D  N  +W
Sbjct: 274 TSVSFSKSGRLLLAGYDDFNCNVW 297

>pdb|3GFC|A Chain A, Crystal Structure Of Histone-Binding Protein Rbbp4 Length = 425

Iteration: 1
 Score = 46.6 bits (109), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 50/208 (24%), Positives = 86/208 (41%), Gaps = 30/208 (14%)
Query: 3   AQKIETGHEDTVHDVAMDFYGKRLATASSDSSIKII--GLSNSASQHLATLKGHRGPVWQ 60
           A+ I TGH   V DV+     + L  + +D    +I    SN+ S+   ++  H   V  
Sbjct: 219 AKTIFTGHTAVVEDVSWHLLHESLFGSVADDQKLMIWDTRSNNTSKPSHSVDAHTAEVNC 278
Query: 61  VAWAHPKFGSILASCSYDGQVIIWKEGNQNDWTQAHTFNDHKSSVNSIAWAPHELGLSLA 120
           +++ +P    ILA+ S D  V +W   N     + H+F  HK  +  + W+PH   + LA
Sbjct: 279 LSF-NPYSEFILATGSADKTVALWDLRNLK--LKLHSFESHKDEIFQVQWSPHNETI-LA 334
Query: 121 CGSSDGNISVFTAT-----------ADGGWDTTRIDQAHPVGVTSVSWAPAMAPGALVGL 169
              +D  ++V+  +            DG  +   I   H   ++  SW P          
Sbjct: 335 SSGTDRRLNVWDLSKIGEEQSPEDAEDGPPELLFIHGGHTAKISDFSWNP---------- 384
Query: 170 GLLDPVQKLASCGCDNTVKVWKMYNGIW 197
              +    + S   DN ++VW+M   I+
Sbjct: 385 ---NEPWVICSVSEDNIMQVWQMAENIY 409

>pdb|4AOW|A Chain A, Crystal Structure Of The Human Rack1 Protein At A Resolution Of 2.45 Angstrom Length = 340

Iteration: 1
 Score = 45.8 bits (107), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 55/198 (27%), Positives = 82/198 (41%), Gaps = 29/198 (14%)
Query: 49  ATLKGHRGPVWQVAWAHPKFGSILASCSYDGQVIIWK--EGNQNDWTQAHTFNDHKSSVN 106
            TLKGH G V Q+A   P+F  ++ S S D  +I+WK      N          H   V+
Sbjct: 32  GTLKGHNGWVTQIA-TTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVS 90
Query: 107 SIAWAPH-ELGLSLACGSSDGNISVFTATADGGWDTTRIDQAHPVGVTSVSWAPAMAPGA 165
            +  +   +  LS   GS DG + ++  T      TTR    H   V SV+++       
Sbjct: 91  DVVISSDGQFALS---GSWDGTLRLWDLTTG---TTTRRFVGHTKDVLSVAFSSDN---- 140
Query: 166 LVGLGLLDPVQKLASCGCDNTVKVWKMYNGIWKMDCFPALQMHSDWVRSVAWAPNLGLPK 225
                     +++ S   D T+K+W    G+ K       + HS+WV  V ++PN   P 
Sbjct: 141 ----------RQIVSGSRDKTIKLWNTL-GVCKYTVQD--ESHSEWVSCVRFSPNSSNP- 186
Query: 226 STIASASQDGTVVIWTCA 243
             I S   D  V +W  A
Sbjct: 187 -IIVSCGWDKLVKVWNLA 203

>pdb|2ZKQ|AA Chain a, Structure Of A Mammalian Ribosomal 40s Subunit Within An 80s Complex Obtained By Docking Homology Models Of The Rna And Proteins Into An 8.7 A Cryo-Em Map Length = 317

Iteration: 1
 Score = 45.4 bits (106), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 55/198 (27%), Positives = 82/198 (41%), Gaps = 29/198 (14%)
Query: 49  ATLKGHRGPVWQVAWAHPKFGSILASCSYDGQVIIWK--EGNQNDWTQAHTFNDHKSSVN 106
            TLKGH G V Q+A   P+F  ++ S S D  +I+WK      N          H   V+
Sbjct: 9   GTLKGHNGWVTQIA-TTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVS 67
Query: 107 SIAWAPH-ELGLSLACGSSDGNISVFTATADGGWDTTRIDQAHPVGVTSVSWAPAMAPGA 165
            +  +   +  LS   GS DG + ++  T      TTR    H   V SV+++       
Sbjct: 68  DVVISSDGQFALS---GSWDGTLRLWDLTTG---TTTRRFVGHTKDVLSVAFSSDN---- 117
Query: 166 LVGLGLLDPVQKLASCGCDNTVKVWKMYNGIWKMDCFPALQMHSDWVRSVAWAPNLGLPK 225
                     +++ S   D T+K+W    G+ K       + HS+WV  V ++PN   P 
Sbjct: 118 ----------RQIVSGSRDKTIKLWNTL-GVCKYTVQD--ESHSEWVSCVRFSPNSSNP- 163
Query: 226 STIASASQDGTVVIWTCA 243
             I S   D  V +W  A
Sbjct: 164 -IIVSCGWDKLVKVWNLA 180

>pdb|3CFV|B Chain B, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH Histone H4 Length = 414

Iteration: 1
 Score = 45.1 bits (105), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 52/213 (24%), Positives = 89/213 (41%), Gaps = 31/213 (14%)
Query: 51  LKGHRGPVWQVAWAHPKFGSILASCSYDGQVIIW------KEGNQNDWTQAHTFNDHKSS 104
           L+GH+   + ++W     G +L S S D  V +W      KEG   D      F  H + 
Sbjct: 175 LRGHQKEGYGLSWNSNLSGHLL-SASDDHTVCLWDINAGPKEGKIVDAKA--IFTGHSAV 231
Query: 105 VNSIAWAPHELGLSL-ACGSSDGNISVFTATADGGWDTTRIDQAHPVGVTSVSWAPAMAP 163
           V  +AW  H L  SL    + D  + ++   ++     + +  AH   V  +S+ P    
Sbjct: 232 VEDVAW--HLLHESLFGSVADDQKLXIWDTRSNTTSKPSHLVDAHTAEVNCLSFNPY--- 286
Query: 164 GALVGLGLLDPVQKLASCGCDNTVKVWKMYNGIWKMDCFPALQMHSDWVRSVAWAPNLGL 223
              +          LA+   D TV +W + N   K+  F   + H D +  V W+P+   
Sbjct: 287 SEFI----------LATGSADKTVALWDLRNLKLKLHTF---ESHKDEIFQVHWSPH--- 330
Query: 224 PKSTIASASQDGTVVIWTCAKEGEQWEGRVLKD 256
            ++ +AS+  D  + +W  +K GE+      +D
Sbjct: 331 NETILASSGTDRRLNVWDLSKIGEEQSAEDAED 363

>pdb|3ZEY|7 Chain 7, High-resolution Cryo-electron Microscopy Structure Of The Trypanosoma Brucei Ribosome Length = 318

Iteration: 1
 Score = 43.5 bits (101), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 38/121 (31%), Positives = 57/121 (47%), Gaps = 18/121 (14%)
Query: 176 QKLASCGCDNTVKVWKMYNGIWKMDCFPALQM--HSDWVRSVAWAPNLGLPKSTIASASQ 233
           +++ S G DN ++VW +     K +C   L    H+DWV  V ++P+L  P   I S   
Sbjct: 122 RQIVSGGRDNALRVWNV-----KGECMHTLSRGAHTDWVSCVRFSPSLDAP--VIVSGGW 174
Query: 234 DGTVVIWTCAKEGEQWEGRVLKDFK---TPVWSVSWSLTGNLLAVADANNVTLWKEAVDG 290
           D  V +W  A       GR++ D K     V SV+ S  G+L A +D + V    +   G
Sbjct: 175 DNLVKVWDLAT------GRLVTDLKGHTNYVTSVTVSPDGSLCASSDKDGVARLWDLTKG 228
Query: 291 E 291
           E
Sbjct: 229 E 229

>pdb|4A11|B Chain B, Structure Of The Hsddb1-Hscsa Complex Length = 408

Iteration: 1
 Score = 41.2 bits (95), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 49/222 (22%), Positives = 75/222 (33%), Gaps = 67/222 (30%)
Query: 23  GKRLATASSDSSIKIIGLSNSASQHLATLKGHRGPVWQVAWAHPKFGSILASCSYDGQVI 82
           G+ + +  SD  I +  L NS+ Q   T K     V  +   HP                
Sbjct: 56  GRYMLSGGSDGVIVLYDLENSSRQSYYTCKA----VCSIGRDHPDV-------------- 97
Query: 83  IWKEGNQNDWTQAHTFNDHKSSVNSIAWAPHELGLSLACGSSDGNISVFTATADGGWDTT 142
                             H+ SV ++ W PH+ G+     S D  + V        WDT 
Sbjct: 98  ------------------HRYSVETVQWYPHDTGM-FTSSSFDKTLKV--------WDTN 130
Query: 143 RIDQAHPVGVTSVSWAPAMAP----GALVGLGLLDPVQKLASCGCDNTVKVWKMYNGIWK 198
            +  A         ++  M+P      LV +G   P  +L    CD           +  
Sbjct: 131 TLQTADVFNFEETVYSHHMSPVSTKHCLVAVGTRGPKVQL----CD-----------LKS 175
Query: 199 MDCFPALQMHSDWVRSVAWAPNLGLPKSTIASASQDGTVVIW 240
             C   LQ H   + +V+W+P        +A+AS D  V +W
Sbjct: 176 GSCSHILQGHRQEILAVSWSPRYDY---ILATASADSRVKLW 214

>pdb|3DWL|C Chain C, Crystal Structure Of Fission Yeast Arp2/3 Complex Lacking The Arp2 Subunit Length = 377

Iteration: 1
 Score = 40.8 bits (94), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 27/80 (33%), Positives = 37/80 (46%), Gaps = 3/80 (3%)
Query: 80  QVIIWKEGNQNDWTQAHTFNDHKSSVNSIAWAPHELGLSLACGSSDGNISVFTATADGGW 139
           QV ++ E + N W  A TF+DH   V  + WAP    + + C S D N  V+    DG W
Sbjct: 34  QVELY-EQDGNGWKHARTFSDHDKIVTCVDWAPKSNRI-VTC-SQDRNAYVYEKRPDGTW 90
Query: 140 DTTRIDQAHPVGVTSVSWAP 159
             T +        T V W+P
Sbjct: 91  KQTLVLLRLNRAATFVRWSP 110

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	302
2pm7_B	297	Protein transport protein SEC13, protein transport	100.0
3bg1_A	316	Protein SEC13 homolog; NPC, transport, WD repeat,	100.0
2ynn_A	304	Coatomer subunit beta'; protein transport, peptide	100.0
4gqb_B	344	Methylosome protein 50; TIM barrel, beta-propeller	100.0
3jrp_A	379	Fusion protein of protein transport protein SEC13	100.0
3fm0_A	345	Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r	100.0
3fm0_A	345	Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r	100.0
3ow8_A	321	WD repeat-containing protein 61; structural genomi	100.0
1vyh_C	410	Platelet-activating factor acetylhydrolase IB alph	100.0
3frx_A	319	Guanine nucleotide-binding protein subunit beta- l	100.0
2hes_X	330	YDR267CP; beta-propeller, WD40 repeat, biosyntheti	100.0
2hes_X	330	YDR267CP; beta-propeller, WD40 repeat, biosyntheti	100.0
3ow8_A	321	WD repeat-containing protein 61; structural genomi	100.0
1got_B	340	GT-beta; complex (GTP-binding/transducer), G prote	100.0
1vyh_C	410	Platelet-activating factor acetylhydrolase IB alph	100.0
4g56_B	357	MGC81050 protein; protein arginine methyltransfera	100.0
2ynn_A	304	Coatomer subunit beta'; protein transport, peptide	100.0
2pbi_B	354	Guanine nucleotide-binding protein subunit beta 5;	100.0
2xzm_R	343	RACK1; ribosome, translation; 3.93A {Tetrahymena t	100.0
3iz6_a	380	40S ribosomal protein RACK1 (RACK1); eukaryotic ri	100.0
3f3f_A	351	Nucleoporin SEH1; structural protein, protein comp	100.0
3dwl_C	377	Actin-related protein 2/3 complex subunit 1; prope	100.0
1nr0_A	611	Actin interacting protein 1; beta propeller, WD40	100.0
1got_B	340	GT-beta; complex (GTP-binding/transducer), G prote	100.0
1nr0_A	611	Actin interacting protein 1; beta propeller, WD40	100.0
3frx_A	319	Guanine nucleotide-binding protein subunit beta- l	100.0
3jro_A	753	Fusion protein of protein transport protein SEC13	100.0
4gqb_B	344	Methylosome protein 50; TIM barrel, beta-propeller	100.0
3dm0_A	694	Maltose-binding periplasmic protein fused with RAC	100.0
4e54_B	435	DNA damage-binding protein 2; beta barrel, double	100.0
4g56_B	357	MGC81050 protein; protein arginine methyltransfera	100.0
2xzm_R	343	RACK1; ribosome, translation; 3.93A {Tetrahymena t	100.0
1erj_A	393	Transcriptional repressor TUP1; beta-propeller, tr	100.0
4ery_A	312	WD repeat-containing protein 5; WD40, WIN motif, b	100.0
1erj_A	393	Transcriptional repressor TUP1; beta-propeller, tr	100.0
1k8k_C	372	P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-	100.0
3iz6_a	380	40S ribosomal protein RACK1 (RACK1); eukaryotic ri	100.0
4aow_A	340	Guanine nucleotide-binding protein subunit beta-2;	100.0
2ymu_A	577	WD-40 repeat protein; unknown function, two domain	100.0
4ery_A	312	WD repeat-containing protein 5; WD40, WIN motif, b	100.0
2ymu_A	577	WD-40 repeat protein; unknown function, two domain	100.0
4h5i_A	365	Guanine nucleotide-exchange factor SEC12; copii ve	100.0
3dm0_A	694	Maltose-binding periplasmic protein fused with RAC	100.0
1gxr_A	337	ESG1, transducin-like enhancer protein 1; transcri	100.0
3ei3_B	383	DNA damage-binding protein 2; UV-damage, DDB, nucl	100.0
3zwl_B	369	Eukaryotic translation initiation factor 3 subuni;	100.0
2j04_B	524	YDR362CP, TAU91; beta propeller, type 2 promoters,	100.0
3vl1_A	420	26S proteasome regulatory subunit RPN14; beta-prop	100.0
1k8k_C	372	P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-	100.0
3k26_A	366	Polycomb protein EED; WD40, structural genomics, N	100.0
2pm9_A	416	Protein WEB1, protein transport protein SEC31; bet	100.0
2xyi_A	430	Probable histone-binding protein CAF1; transcripti	100.0
3dwl_C	377	Actin-related protein 2/3 complex subunit 1; prope	100.0
2j04_B	524	YDR362CP, TAU91; beta propeller, type 2 promoters,	100.0
3i2n_A	357	WD repeat-containing protein 92; WD40 repeats, str	100.0
4aow_A	340	Guanine nucleotide-binding protein subunit beta-2;	100.0
1sq9_A	397	Antiviral protein SKI8; WD repeat, beta-transducin	100.0
4a11_B	408	DNA excision repair protein ERCC-8; DNA binding pr	100.0
3dw8_B	447	Serine/threonine-protein phosphatase 2A 55 kDa RE	100.0
4aez_A	401	CDC20, WD repeat-containing protein SLP1; cell cyc	100.0
4gga_A	420	P55CDC, cell division cycle protein 20 homolog; ce	100.0
1gxr_A	337	ESG1, transducin-like enhancer protein 1; transcri	100.0
3vl1_A	420	26S proteasome regulatory subunit RPN14; beta-prop	100.0
2pbi_B	354	Guanine nucleotide-binding protein subunit beta 5;	100.0
3bg1_A	316	Protein SEC13 homolog; NPC, transport, WD repeat,	100.0
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	100.0
2aq5_A	402	Coronin-1A; WD40 repeat, 7-bladed beta-propeller,	100.0
3mmy_A	368	MRNA export factor; mRNA export, nuclear protein;	100.0
4gq1_A	393	NUP37; propeller, transport protein; 2.40A {Schizo	100.0
1yfq_A	342	Cell cycle arrest protein BUB3; WD repeat WD40 rep	100.0
3ei3_B	383	DNA damage-binding protein 2; UV-damage, DDB, nucl	100.0
3odt_A	313	Protein DOA1; ubiquitin, nuclear protein; HET: MSE	100.0
3v7d_B	464	Cell division control protein 4; WD 40 domain, pho	100.0
2pm7_B	297	Protein transport protein SEC13, protein transport	100.0
1r5m_A	425	SIR4-interacting protein SIF2; transcription corep	100.0
2pm9_A	416	Protein WEB1, protein transport protein SEC31; bet	100.0
1sq9_A	397	Antiviral protein SKI8; WD repeat, beta-transducin	100.0
3gre_A	437	Serine/threonine-protein kinase VPS15; seven-blade	100.0
3k26_A	366	Polycomb protein EED; WD40, structural genomics, N	100.0
3sfz_A	1249	APAF-1, apoptotic peptidase activating factor 1; a	100.0
3i2n_A	357	WD repeat-containing protein 92; WD40 repeats, str	100.0
1r5m_A	425	SIR4-interacting protein SIF2; transcription corep	100.0
3odt_A	313	Protein DOA1; ubiquitin, nuclear protein; HET: MSE	100.0
3v7d_B	464	Cell division control protein 4; WD 40 domain, pho	100.0
3dw8_B	447	Serine/threonine-protein phosphatase 2A 55 kDa RE	100.0
4ggc_A	318	P55CDC, cell division cycle protein 20 homolog; ce	100.0
4aez_A	401	CDC20, WD repeat-containing protein SLP1; cell cyc	100.0
1p22_A	435	F-BOX/WD-repeat protein 1A; ubiquitination, degrad	100.0
4e54_B	435	DNA damage-binding protein 2; beta barrel, double	100.0
3sfz_A	1249	APAF-1, apoptotic peptidase activating factor 1; a	100.0
2aq5_A	402	Coronin-1A; WD40 repeat, 7-bladed beta-propeller,	100.0
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	100.0
3gre_A	437	Serine/threonine-protein kinase VPS15; seven-blade	100.0
1p22_A	435	F-BOX/WD-repeat protein 1A; ubiquitination, degrad	100.0
3jrp_A	379	Fusion protein of protein transport protein SEC13	100.0
3lrv_A	343	PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu	100.0
2vdu_B	450	TRNA (guanine-N(7)-)-methyltransferase- associated	100.0
1pgu_A	615	Actin interacting protein 1; WD repeat, seven-blad	100.0
4h5i_A	365	Guanine nucleotide-exchange factor SEC12; copii ve	100.0
2oaj_A	902	Protein SNI1; WD40 repeat, beta propeller, endocyt	100.0
2vdu_B	450	TRNA (guanine-N(7)-)-methyltransferase- associated	100.0
4gga_A	420	P55CDC, cell division cycle protein 20 homolog; ce	99.98
2ovr_B	445	FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40	99.98
1yfq_A	342	Cell cycle arrest protein BUB3; WD repeat WD40 rep	99.98
1pgu_A	615	Actin interacting protein 1; WD repeat, seven-blad	99.98
3vu4_A	355	KMHSV2; beta-propeller fold, protein transport; 2.	99.98
2j04_A	588	TAU60, YPL007P, hypothetical protein YPL007C; beta	99.98
2ovr_B	445	FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40	99.97
2j04_A	588	TAU60, YPL007P, hypothetical protein YPL007C; beta	99.97
4ggc_A	318	P55CDC, cell division cycle protein 20 homolog; ce	99.97
2oaj_A	902	Protein SNI1; WD40 repeat, beta propeller, endocyt	99.97
3f3f_A	351	Nucleoporin SEH1; structural protein, protein comp	99.97
3jro_A	753	Fusion protein of protein transport protein SEC13	99.97
2xyi_A	430	Probable histone-binding protein CAF1; transcripti	99.97
4a11_B	408	DNA excision repair protein ERCC-8; DNA binding pr	99.97
2w18_A	356	PALB2, fancn, partner and localizer of BRCA2; fanc	99.97
3lrv_A	343	PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu	99.96
3zwl_B	369	Eukaryotic translation initiation factor 3 subuni;	99.96
2w18_A	356	PALB2, fancn, partner and localizer of BRCA2; fanc	99.96
3mmy_A	368	MRNA export factor; mRNA export, nuclear protein;	99.96
4gq1_A	393	NUP37; propeller, transport protein; 2.40A {Schizo	99.96
3bws_A	433	Protein LP49; two-domain, immunoglobulin-like, 7-b	99.95
1l0q_A	391	Surface layer protein; SLP, S-layer, 7-bladed beta	99.94
3vu4_A	355	KMHSV2; beta-propeller fold, protein transport; 2.	99.94
3bws_A	433	Protein LP49; two-domain, immunoglobulin-like, 7-b	99.94
1l0q_A	391	Surface layer protein; SLP, S-layer, 7-bladed beta	99.93
1ri6_A	343	Putative isomerase YBHE; 7-bladed propeller, enzym	99.93
3hfq_A	347	Uncharacterized protein LP_2219; Q88V64_lacpl, NES	99.92
2hqs_A	415	Protein TOLB; TOLB, PAL, TOL, transport protein-li	99.92
2hqs_A	415	Protein TOLB; TOLB, PAL, TOL, transport protein-li	99.91
2ojh_A	297	Uncharacterized protein ATU1656/AGR_C_3050; TOLB,	99.9
2oit_A	434	Nucleoporin 214KDA; NH2 terminal domain of NUP214/	99.9
1nir_A	543	Nitrite reductase; hemoprotein, denitrification, d	99.89
3scy_A	361	Hypothetical bacterial 6-phosphogluconolactonase;	99.88
2ojh_A	297	Uncharacterized protein ATU1656/AGR_C_3050; TOLB,	99.87
2ecf_A	741	Dipeptidyl peptidase IV; prolyl oligopeptidase fam	99.87
2oit_A	434	Nucleoporin 214KDA; NH2 terminal domain of NUP214/	99.87
1ri6_A	343	Putative isomerase YBHE; 7-bladed propeller, enzym	99.86
3u4y_A	331	Uncharacterized protein; structural genomics, PSI-	99.86
1xfd_A	723	DIP, dipeptidyl aminopeptidase-like protein 6, dip	99.86
1nir_A	543	Nitrite reductase; hemoprotein, denitrification, d	99.85
2ecf_A	741	Dipeptidyl peptidase IV; prolyl oligopeptidase fam	99.85
3o4h_A	582	Acylamino-acid-releasing enzyme; alpha/beta hydrol	99.85
2z3z_A	706	Dipeptidyl aminopeptidase IV; peptidase family S9,	99.84
1k32_A	1045	Tricorn protease; protein degradation, substrate g	99.83
2z3z_A	706	Dipeptidyl aminopeptidase IV; peptidase family S9,	99.83
1jof_A	365	Carboxy-CIS,CIS-muconate cyclase; beta-propeller,	99.83
1xfd_A	723	DIP, dipeptidyl aminopeptidase-like protein 6, dip	99.83
3u4y_A	331	Uncharacterized protein; structural genomics, PSI-	99.83
3hfq_A	347	Uncharacterized protein LP_2219; Q88V64_lacpl, NES	99.82
1jmx_B	349	Amine dehydrogenase; oxidoreductase; HET: TRQ HEC;	99.82
3vgz_A	353	Uncharacterized protein YNCE; beta-propeller, prot	99.82
1pby_B	337	Quinohemoprotein amine dehydrogenase 40 kDa subuni	99.81
3vgz_A	353	Uncharacterized protein YNCE; beta-propeller, prot	99.81
1k32_A	1045	Tricorn protease; protein degradation, substrate g	99.81
1z68_A	719	Fibroblast activation protein, alpha subunit; sepr	99.78
3o4h_A	582	Acylamino-acid-releasing enzyme; alpha/beta hydrol	99.77
3scy_A	361	Hypothetical bacterial 6-phosphogluconolactonase;	99.76
4a5s_A	740	Dipeptidyl peptidase 4 soluble form; hydrolase, ty	99.75
1q7f_A	286	NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL	99.72
1z68_A	719	Fibroblast activation protein, alpha subunit; sepr	99.71
1jof_A	365	Carboxy-CIS,CIS-muconate cyclase; beta-propeller,	99.71
1pby_B	337	Quinohemoprotein amine dehydrogenase 40 kDa subuni	99.7
3fvz_A	329	Peptidyl-glycine alpha-amidating monooxygenase; be	99.69
3pe7_A	388	Oligogalacturonate lyase; seven-bladed beta-propel	99.68
3pe7_A	388	Oligogalacturonate lyase; seven-bladed beta-propel	99.67
3azo_A	662	Aminopeptidase; POP family, hydrolase; 2.00A {Stre	99.64
3azo_A	662	Aminopeptidase; POP family, hydrolase; 2.00A {Stre	99.64
3e5z_A	296	Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco	99.63
4a5s_A	740	Dipeptidyl peptidase 4 soluble form; hydrolase, ty	99.61
2xdw_A	710	Prolyl endopeptidase; alpha/beta-hydrolase, amnesi	99.6
1jmx_B	349	Amine dehydrogenase; oxidoreductase; HET: TRQ HEC;	99.6
2gop_A	347	Trilobed protease; beta propeller, open velcro, hy	99.58
2dg1_A	333	DRP35, lactonase; beta propeller, hydrolase; 1.72A	99.56
2bkl_A	695	Prolyl endopeptidase; mechanistic study, celiac sp	99.56
3c5m_A	396	Oligogalacturonate lyase; blade-shaped beta-propel	99.53
2dg1_A	333	DRP35, lactonase; beta propeller, hydrolase; 1.72A	99.53
1rwi_B	270	Serine/threonine-protein kinase PKND; beta propell	99.52
3c5m_A	396	Oligogalacturonate lyase; blade-shaped beta-propel	99.51
2gop_A	347	Trilobed protease; beta propeller, open velcro, hy	99.47
1pjx_A	314	Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries	99.47
2oiz_A	361	Aromatic amine dehydrogenase, large subunit; oxido	99.45
2z2n_A	299	Virginiamycin B lyase; seven-bladed beta-propeller	99.45
3fvz_A	329	Peptidyl-glycine alpha-amidating monooxygenase; be	99.43
1q7f_A	286	NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL	99.43
2oiz_A	361	Aromatic amine dehydrogenase, large subunit; oxido	99.42
1yr2_A	741	Prolyl oligopeptidase; prolyl endopeptidase, mecha	99.41
2xdw_A	710	Prolyl endopeptidase; alpha/beta-hydrolase, amnesi	99.38
2z2n_A	299	Virginiamycin B lyase; seven-bladed beta-propeller	99.37
3no2_A	276	Uncharacterized protein; six-bladed beta-propeller	99.37
2bkl_A	695	Prolyl endopeptidase; mechanistic study, celiac sp	99.35
3e5z_A	296	Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco	99.34
1xip_A	388	Nucleoporin NUP159; beta-propeller, transport prot	99.29
2qc5_A	300	Streptogramin B lactonase; beta propeller, lyase;	99.29
3hrp_A	409	Uncharacterized protein; NP_812590.1, structural g	99.28
1xip_A	388	Nucleoporin NUP159; beta-propeller, transport prot	99.28
1qks_A	567	Cytochrome CD1 nitrite reductase; enzyme, oxidored	99.25
3iuj_A	693	Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas	99.25
3dsm_A	328	Uncharacterized protein bacuni_02894; seven_blated	99.23
3g4e_A	297	Regucalcin; six bladed beta-propeller, gluconolcat	99.23
2qc5_A	300	Streptogramin B lactonase; beta propeller, lyase;	99.17
1rwi_B	270	Serine/threonine-protein kinase PKND; beta propell	99.16
1yr2_A	741	Prolyl oligopeptidase; prolyl endopeptidase, mecha	99.15
3no2_A	276	Uncharacterized protein; six-bladed beta-propeller	99.13
2ghs_A	326	AGR_C_1268P; regucalcin, structural genomics, join	99.11
1qks_A	567	Cytochrome CD1 nitrite reductase; enzyme, oxidored	99.1
3dr2_A	305	Exported gluconolactonase; gluconolactonase SMP-30	99.06
3dsm_A	328	Uncharacterized protein bacuni_02894; seven_blated	99.06
2qe8_A	343	Uncharacterized protein; structural genomics, join	99.02
1pjx_A	314	Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries	99.0
2mad_H	373	Methylamine dehydrogenase (heavy subunit); oxidore	98.91
3hrp_A	409	Uncharacterized protein; NP_812590.1, structural g	98.88
3g4e_A	297	Regucalcin; six bladed beta-propeller, gluconolcat	98.84
3sjl_D	386	Methylamine dehydrogenase heavy chain; MAUG, C-hem	98.8
2ece_A	462	462AA long hypothetical selenium-binding protein;	98.8
3iuj_A	693	Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas	98.77
3dr2_A	305	Exported gluconolactonase; gluconolactonase SMP-30	98.73
2ghs_A	326	AGR_C_1268P; regucalcin, structural genomics, join	98.67
2mad_H	373	Methylamine dehydrogenase (heavy subunit); oxidore	98.62
3c75_H	426	MADH, methylamine dehydrogenase heavy chain; coppe	98.61
2hz6_A	369	Endoplasmic reticulum to nucleus signalling 1 isof	98.52
2hz6_A	369	Endoplasmic reticulum to nucleus signalling 1 isof	98.5
2qe8_A	343	Uncharacterized protein; structural genomics, join	98.46
3sjl_D	386	Methylamine dehydrogenase heavy chain; MAUG, C-hem	98.41
1mda_H	368	Methylamine dehydrogenase (heavy subunit); electro	98.41
3c75_H	426	MADH, methylamine dehydrogenase heavy chain; coppe	98.22
2iwa_A	266	Glutamine cyclotransferase; pyroglutamate, acyltra	98.19
2ece_A	462	462AA long hypothetical selenium-binding protein;	98.12
1kb0_A	677	Quinohemoprotein alcohol dehydrogenase; beta-prope	98.08
1mda_H	368	Methylamine dehydrogenase (heavy subunit); electro	98.05
1k3i_A	656	Galactose oxidase precursor; blade beta propeller,	98.01
1fwx_A	595	Nitrous oxide reductase; beta-propeller domain, cu	97.94
2xe4_A	751	Oligopeptidase B; hydrolase-inhibitor complex, hyd	97.92
1yiq_A	689	Quinohemoprotein alcohol dehydrogenase; electron t	97.85
2xbg_A	327	YCF48-like protein; photosynthesis, photosystem II	97.83
1yiq_A	689	Quinohemoprotein alcohol dehydrogenase; electron t	97.78
3hxj_A	330	Pyrrolo-quinoline quinone; all beta protein. incom	97.75
1k3i_A	656	Galactose oxidase precursor; blade beta propeller,	97.74
2fp8_A	322	Strictosidine synthase; six bladed beta propeller	97.73
2xbg_A	327	YCF48-like protein; photosynthesis, photosystem II	97.72
3nol_A	262	Glutamine cyclotransferase; beta-propeller, glutam	97.68
2xe4_A	751	Oligopeptidase B; hydrolase-inhibitor complex, hyd	97.65
1npe_A	267	Nidogen, entactin; glycoprotein, basement membrane	97.64
3nol_A	262	Glutamine cyclotransferase; beta-propeller, glutam	97.63
1npe_A	267	Nidogen, entactin; glycoprotein, basement membrane	97.6
3nok_A	268	Glutaminyl cyclase; beta-propeller, cyclotransfera	97.58
3q7m_A	376	Lipoprotein YFGL, BAMB; beta-propeller, BAM comple	97.55
3qqz_A	255	Putative uncharacterized protein YJIK; MCSG, PSI-2	97.52
1kb0_A	677	Quinohemoprotein alcohol dehydrogenase; beta-prope	97.45
3q7m_A	376	Lipoprotein YFGL, BAMB; beta-propeller, BAM comple	97.4
3hxj_A	330	Pyrrolo-quinoline quinone; all beta protein. incom	97.38
3mbr_X	243	Glutamine cyclotransferase; beta-propeller; 1.44A	97.38
2p4o_A	306	Hypothetical protein; putative lactonase, structur	97.35
2iwa_A	266	Glutamine cyclotransferase; pyroglutamate, acyltra	97.31
4a2l_A	795	BT_4663, two-component system sensor histidine kin	97.27
3nok_A	268	Glutaminyl cyclase; beta-propeller, cyclotransfera	97.27
3tc9_A	430	Hypothetical hydrolase; 6-bladed beta-propeller, i	97.12
2p4o_A	306	Hypothetical protein; putative lactonase, structur	97.11
4a2l_A	795	BT_4663, two-component system sensor histidine kin	97.06
1kv9_A	668	Type II quinohemoprotein alcohol dehydrogenase; el	96.87
3v65_B	386	Low-density lipoprotein receptor-related protein;	96.69
3mbr_X	243	Glutamine cyclotransferase; beta-propeller; 1.44A	96.66
3v9f_A	781	Two-component system sensor histidine kinase/RESP	96.6
3qqz_A	255	Putative uncharacterized protein YJIK; MCSG, PSI-2	96.49
4hw6_A	433	Hypothetical protein, IPT/TIG domain protein; puta	96.48
2g8s_A	353	Glucose/sorbosone dehydrogenases; bladed beta-prop	96.4
2ism_A	352	Putative oxidoreductase; BL41XU spring-8, bladed b	96.31
3v9f_A	781	Two-component system sensor histidine kinase/RESP	96.24
4hw6_A	433	Hypothetical protein, IPT/TIG domain protein; puta	96.2
1fwx_A	595	Nitrous oxide reductase; beta-propeller domain, cu	96.01
3v64_C	349	Agrin; beta propeller, laminin-G, signaling, prote	95.99
2fp8_A	322	Strictosidine synthase; six bladed beta propeller	95.77
3v64_C	349	Agrin; beta propeller, laminin-G, signaling, prote	95.75
2xn4_A	302	Kelch-like protein 2; structural protein, cytoskel	95.73
3v65_B	386	Low-density lipoprotein receptor-related protein;	95.64
3a9g_A	354	Putative uncharacterized protein; PQQ dependent de	95.64
3sre_A	355	PON1, serum paraoxonase; directed evolution, 6-bla	95.5
3pbp_A	452	Nucleoporin NUP82; beta-propeller, mRNA export, mR	95.48
2p9w_A	334	MAL S 1 allergenic protein; beta propeller; 1.35A	95.33
2vpj_A	301	Kelch-like protein 12; adaptor protein, WNT signal	95.24
3pbp_A	452	Nucleoporin NUP82; beta-propeller, mRNA export, mR	95.2
3kya_A	496	Putative phosphatase; structural genomics, joint c	95.08
3tc9_A	430	Hypothetical hydrolase; 6-bladed beta-propeller, i	95.04
1n7d_A	699	LDL receptor, low-density lipoprotein receptor; fa	94.85
3m0c_C	791	LDL receptor, low-density lipoprotein receptor; pr	94.72
3sov_A	318	LRP-6, low-density lipoprotein receptor-related pr	94.67
3p5b_L	400	Low density lipoprotein receptor variant; B-propel	94.52
3ii7_A	306	Kelch-like protein 7; protein-binding, kelch-repea	94.48
1n7d_A	699	LDL receptor, low-density lipoprotein receptor; fa	94.44
1kv9_A	668	Type II quinohemoprotein alcohol dehydrogenase; el	94.43
3ei3_A	1158	DNA damage-binding protein 1; UV-damage, DDB, nucl	94.06
2xn4_A	302	Kelch-like protein 2; structural protein, cytoskel	94.0
1zgk_A	308	Kelch-like ECH-associated protein 1; beta-propelle	93.97
3sre_A	355	PON1, serum paraoxonase; directed evolution, 6-bla	93.82
3ii7_A	306	Kelch-like protein 7; protein-binding, kelch-repea	93.58
2ad6_A	571	Methanol dehydrogenase subunit 1; PQQ configuratio	92.87
3amr_A	355	3-phytase; beta-propeller, phytate, MYO-inositol h	92.8
1ijq_A	316	LDL receptor, low-density lipoprotein receptor; be	92.78
2vpj_A	301	Kelch-like protein 12; adaptor protein, WNT signal	92.67
2ad6_A	571	Methanol dehydrogenase subunit 1; PQQ configuratio	92.45
2p9w_A	334	MAL S 1 allergenic protein; beta propeller; 1.35A	92.41
3m0c_C	791	LDL receptor, low-density lipoprotein receptor; pr	92.41
1flg_A	582	Protein (quinoprotein ethanol dehydrogenase); supe	92.39
1w6s_A	599	Methanol dehydrogenase subunit 1; anisotropic, ele	92.37
1ijq_A	316	LDL receptor, low-density lipoprotein receptor; be	92.19
3kya_A	496	Putative phosphatase; structural genomics, joint c	92.13
3p5b_L	400	Low density lipoprotein receptor variant; B-propel	92.08
4asc_A	315	Kelch repeat and BTB domain-containing protein 5;	91.5
4asc_A	315	Kelch repeat and BTB domain-containing protein 5;	90.97
3sov_A	318	LRP-6, low-density lipoprotein receptor-related pr	90.76
1zgk_A	308	Kelch-like ECH-associated protein 1; beta-propelle	90.24
1cru_A	454	Protein (soluble quinoprotein glucose dehydrogena;	90.08
3a9g_A	354	Putative uncharacterized protein; PQQ dependent de	89.53
2ism_A	352	Putative oxidoreductase; BL41XU spring-8, bladed b	89.32
1w6s_A	599	Methanol dehydrogenase subunit 1; anisotropic, ele	89.02
2woz_A	318	Kelch repeat and BTB domain-containing protein 10;	88.77
1flg_A	582	Protein (quinoprotein ethanol dehydrogenase); supe	88.72
2uvk_A	357	YJHT; unknown function, hypothetical protein, sial	87.86
3das_A	347	Putative oxidoreductase; aldose sugar dehydrogenas	87.34
3amr_A	355	3-phytase; beta-propeller, phytate, MYO-inositol h	86.38
1tl2_A	236	L10, protein (tachylectin-2); animal lectin, horse	84.57
3b7f_A	394	Glycosyl hydrolase, BNR repeat; 7-bladed beta-prop	83.33
2g8s_A	353	Glucose/sorbosone dehydrogenases; bladed beta-prop	80.15

>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A

Probab=100.00  E-value=1.8e-47  Score=328.97  Aligned_cols=290  Identities=46%  Similarity=0.838  Sum_probs=226.2

Q ss_pred             cccccccceeEEEEccCCCEEEEeeCCCcEEEEeecCCCceEEEEecCcccCeEEEEeeCCCCCCEEEEEeCCCeEEEEE
Q 022111            6 IETGHEDTVHDVAMDFYGKRLATASSDSSIKIIGLSNSASQHLATLKGHRGPVWQVAWAHPKFGSILASCSYDGQVIIWK   85 (302)
Q Consensus         6 ~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~s~D~~i~iwd   85 (302)
                      ++.+|.+.|++++|+|+|++||+|+.|++|+||++.....+.+.++.+|.+.|++++|+++.++++|+||+.|++|++||
T Consensus         4 ~~~~h~~~V~~~~~s~~g~~las~s~D~~v~iw~~~~~~~~~~~~l~gH~~~V~~v~~s~~~~g~~l~s~s~D~~v~iWd   83 (297)
T 2pm7_B            4 IANAHNEMIHDAVMDYYGKRMATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVMIWK   83 (297)
T ss_dssp             ECCSCSSCEEEEEECTTSSEEEEEETTSCEEEEEBCSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTTEEEEEE
T ss_pred             eccCCcCceEEEEECCCCCEEEEEeCCCEEEEEecCCCCcEEEEEEccccCCeEEEEecCCCcCCEEEEEcCCCEEEEEE
Confidence            46799999999999999999999999999999999754445677899999999999998654578999999999999999


Q ss_pred             cCCCCceeEEEEecCCCCCeeEEEecCCCCCcEEEEEecCCcEEEEEecCCCCeeeeeecccCCCCeEEEEeCCCCCCCc
Q 022111           86 EGNQNDWTQAHTFNDHKSSVNSIAWAPHELGLSLACGSSDGNISVFTATADGGWDTTRIDQAHPVGVTSVSWAPAMAPGA  165 (302)
Q Consensus        86 ~~~~~~~~~~~~~~~h~~~i~~l~~~pd~~~~~l~sg~~d~~v~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~  165 (302)
                      ++++. +.....+.+|...|.+++|+|+..+.+|++|+.|++|++||++.........+ .+|...|.+++|+|+.....
T Consensus        84 ~~~~~-~~~~~~~~~h~~~v~~v~~~p~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~~~-~~h~~~v~~~~~~p~~~~~~  161 (297)
T 2pm7_B           84 EENGR-WSQIAVHAVHSASVNSVQWAPHEYGPMLLVASSDGKVSVVEFKENGTTSPIII-DAHAIGVNSASWAPATIEED  161 (297)
T ss_dssp             BSSSC-BCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEEBCSSSCBCCEEE-ECCSSCEEEEEECCCC----
T ss_pred             cCCCc-eEEEEEeecCCCceeEEEeCcCCCCcEEEEEECCCcEEEEEecCCCceeeeee-ecccCccceEeecCCccccc
Confidence            97642 23455677899999999999975467899999999999999975433222333 37889999999999642110


Q ss_pred             eeecccCCCceeEEEeeCCCcEEEEEEecCccccccccccccCCCceeEEEeeCCCCCCccEEEEEecCCeEEEEEeccC
Q 022111          166 LVGLGLLDPVQKLASCGCDNTVKVWKMYNGIWKMDCFPALQMHSDWVRSVAWAPNLGLPKSTIASASQDGTVVIWTCAKE  245 (302)
Q Consensus       166 ~~~~~~~~~~~~l~s~~~D~~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~l~s~s~D~~i~iwd~~~~  245 (302)
                      .. .....++.+|++|+.|++|+|||++++.....+...+.+|.++|++++|+|++ ..+.+||+++.|++|+|||++..
T Consensus       162 ~~-~~~~~~~~~l~sgs~D~~v~lwd~~~~~~~~~~~~~l~~H~~~V~~v~~sp~~-~~~~~las~s~D~~v~iWd~~~~  239 (297)
T 2pm7_B          162 GE-HNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTV-LLRSYMASVSQDRTCIIWTQDNE  239 (297)
T ss_dssp             ---------CCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCC-SSSEEEEEEETTSCEEEEEESST
T ss_pred             cc-CCCCCCcceEEEEcCCCcEEEEEEcCCCceEEEEEEecCCCCceEEEEECCCC-CCceEEEEEECCCcEEEEEeCCC
Confidence            00 00011246899999999999999987643333456788999999999999984 12378999999999999999764


Q ss_pred             Ccceeeeee--ccCCCcEEEEEEccCCCEEEEecCC-ceEEeeecCCceEEEeeecC
Q 022111          246 GEQWEGRVL--KDFKTPVWSVSWSLTGNLLAVADAN-NVTLWKEAVDGEWQQVSVVE  299 (302)
Q Consensus       246 ~~~~~~~~~--~~~~~~v~~~~~spdg~~la~~~~d-~i~~w~~~~~~~~~~~~~~~  299 (302)
                      ...+....+  ..+...|++++|+|+|++||+++.| .|+||+...+|.|++...++
T Consensus       240 ~~~~~~~~~~~~~~~~~v~~~~~s~~g~~las~~~D~~v~lw~~~~~g~w~~~~~~~  296 (297)
T 2pm7_B          240 QGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKENLEGKWEPAGEVH  296 (297)
T ss_dssp             TSCCEEEESSSSCCSSCEEEEEECSSSCCEEEEETTSCEEEEEECTTSCEEEC----
T ss_pred             CCccceeeeecccCCCcEEEEEECCCCCEEEEEcCCCcEEEEEECCCCcEEeccccc
Confidence            322222233  4567889999999999999999988 79999998889999987764

>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A

Probab=100.00  E-value=6.6e-47  Score=328.27  Aligned_cols=293  Identities=53%  Similarity=1.018  Sum_probs=226.6

Q ss_pred             ccccccccceeEEEEccCCCEEEEeeCCCcEEEEeecCCCceEEEEecCcccCeEEEEeeCCCCCCEEEEEeCCCeEEEE
Q 022111            5 KIETGHEDTVHDVAMDFYGKRLATASSDSSIKIIGLSNSASQHLATLKGHRGPVWQVAWAHPKFGSILASCSYDGQVIIW   84 (302)
Q Consensus         5 ~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~s~D~~i~iw   84 (302)
                      .++.+|++.|++++|+++|++||+|+.|++|+|||+..+....+..+.+|.+.|++++|+++.++++|+||+.|++|++|
T Consensus         7 ~~~~~H~~~V~~v~~s~~g~~lasgs~D~~v~lwd~~~~~~~~~~~l~gH~~~V~~v~~~~~~~~~~l~s~s~D~~v~iW   86 (316)
T 3bg1_A            7 TVDTSHEDMIHDAQMDYYGTRLATCSSDRSVKIFDVRNGGQILIADLRGHEGPVWQVAWAHPMYGNILASCSYDRKVIIW   86 (316)
T ss_dssp             -------CCEEEEEECGGGCEEEEEETTTEEEEEEEETTEEEEEEEEECCSSCEEEEEECCGGGSSCEEEEETTSCEEEE
T ss_pred             eecccccCeEEEeeEcCCCCEEEEEeCCCeEEEEEecCCCcEEEEEEcCCCccEEEEEeCCCCCCCEEEEEECCCEEEEE
Confidence            34679999999999999999999999999999999976543456788999999999999865447899999999999999


Q ss_pred             EcCCCCceeEEEEecCCCCCeeEEEecCCCCCcEEEEEecCCcEEEEEecCCCCeeeeeecccCCCCeEEEEeCCCCCCC
Q 022111           85 KEGNQNDWTQAHTFNDHKSSVNSIAWAPHELGLSLACGSSDGNISVFTATADGGWDTTRIDQAHPVGVTSVSWAPAMAPG  164 (302)
Q Consensus        85 d~~~~~~~~~~~~~~~h~~~i~~l~~~pd~~~~~l~sg~~d~~v~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~  164 (302)
                      |++++. +.....+.+|...|.+++|+|+..+.+|++|+.|++|++|++.....+.......+|...+.++.|+|+..++
T Consensus        87 d~~~~~-~~~~~~~~~h~~~V~~v~~~p~~~g~~lasgs~D~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~  165 (316)
T 3bg1_A           87 REENGT-WEKSHEHAGHDSSVNSVCWAPHDYGLILACGSSDGAISLLTYTGEGQWEVKKINNAHTIGCNAVSWAPAVVPG  165 (316)
T ss_dssp             CCSSSC-CCEEEEECCCSSCCCEEEECCTTTCSCEEEECSSSCEEEEEECSSSCEEECCBTTSSSSCBCCCEECCCCCC-
T ss_pred             ECCCCc-ceEEEEccCCCCceEEEEECCCCCCcEEEEEcCCCCEEEEecCCCCCcceeeeeccccCCcceEEEccccCCc
Confidence            987642 2356678889999999999998657789999999999999997654443333334788899999999975433


Q ss_pred             ceeeccc---CCCceeEEEeeCCCcEEEEEEecCccccccccccccCCCceeEEEeeCCCCCCccEEEEEecCCeEEEEE
Q 022111          165 ALVGLGL---LDPVQKLASCGCDNTVKVWKMYNGIWKMDCFPALQMHSDWVRSVAWAPNLGLPKSTIASASQDGTVVIWT  241 (302)
Q Consensus       165 ~~~~~~~---~~~~~~l~s~~~D~~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~l~s~s~D~~i~iwd  241 (302)
                      .+.....   ...+.+|++|+.|++|+|||+.... ...+...+.+|.++|++++|+|++..++..|++++.|++|+||+
T Consensus       166 ~~~~~~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~-~~~~~~~l~~h~~~V~~v~~sp~~~~~~~~las~s~D~~v~iw~  244 (316)
T 3bg1_A          166 SLIDHPSGQKPNYIKRFASGGCDNLIKLWKEEEDG-QWKEEQKLEAHSDWVRDVAWAPSIGLPTSTIASCSQDGRVFIWT  244 (316)
T ss_dssp             -----CCSCCCCCCCBEECCBTTSBCCEEEECTTS-CEEEEECCBCCSSCEEEEECCCCSSCSCCEEEEEETTCEEEEEE
T ss_pred             cccccccccCccccceEEEecCCCeEEEEEeCCCC-ccceeeecccCCCceEEEEecCCCCCCCceEEEEcCCCeEEEEE
Confidence            2211110   0124689999999999999996431 11244578899999999999998643347899999999999999


Q ss_pred             eccCC-cceeeeeeccCCCcEEEEEEccCCCEEEEecCC-ceEEeeecCCceEEEeeecC
Q 022111          242 CAKEG-EQWEGRVLKDFKTPVWSVSWSLTGNLLAVADAN-NVTLWKEAVDGEWQQVSVVE  299 (302)
Q Consensus       242 ~~~~~-~~~~~~~~~~~~~~v~~~~~spdg~~la~~~~d-~i~~w~~~~~~~~~~~~~~~  299 (302)
                      ++... ..+....+..|...|++++|+|+|++||+++.| .|+||+....|.|++...+.
T Consensus       245 ~~~~~~~~~~~~~~~~~~~~v~~v~~sp~g~~las~~~D~~v~lw~~~~~g~~~~~~~~~  304 (316)
T 3bg1_A          245 CDDASSNTWSPKLLHKFNDVVWHVSWSITANILAVSGGDNKVTLWKESVDGQWVCISDVN  304 (316)
T ss_dssp             CSSTTCCCCBCCEEEECSSCEEEEEECTTTCCEEEEESSSCEEEEEECTTSCEEEEEECC
T ss_pred             ccCccccchhhhhhhcCCCcEEEEEEcCCCCEEEEEcCCCeEEEEEECCCCcEEEeeecc
Confidence            87521 112223445678899999999999999999988 79999998889999987765

>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A

Probab=100.00  E-value=9.9e-42  Score=294.02  Aligned_cols=257  Identities=17%  Similarity=0.204  Sum_probs=213.1

Q ss_pred             CCcccccccccceeEEEEccCCCEEEEeeCCCcEEEEeecCCCceEEEEecCcccCeEEEEeeCCCCCCEEEEEeCCCeE
Q 022111            2 PAQKIETGHEDTVHDVAMDFYGKRLATASSDSSIKIIGLSNSASQHLATLKGHRGPVWQVAWAHPKFGSILASCSYDGQV   81 (302)
Q Consensus         2 ~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~s~D~~i   81 (302)
                      ..++++.+|.+.|++++|+|++++|++|+.|++|+|||+..  ...+..+.+|..+|.+++|+++  +++|++|+.|++|
T Consensus         4 ~~~~~~~~h~~~V~~~~fsp~~~~l~s~~~dg~v~lWd~~~--~~~~~~~~~~~~~v~~~~~~~~--~~~l~s~s~d~~i   79 (304)
T 2ynn_A            4 DIKKTFSNRSDRVKGIDFHPTEPWVLTTLYSGRVELWNYET--QVEVRSIQVTETPVRAGKFIAR--KNWIIVGSDDFRI   79 (304)
T ss_dssp             CCEEEEEEECSCEEEEEECSSSSEEEEEETTSEEEEEETTT--TEEEEEEECCSSCEEEEEEEGG--GTEEEEEETTSEE
T ss_pred             eeEEeecCCCCceEEEEECCCCCEEEEEcCCCcEEEEECCC--CceeEEeeccCCcEEEEEEeCC--CCEEEEECCCCEE
Confidence            34567889999999999999999999999999999999865  4567788899999999999874  7899999999999


Q ss_pred             EEEEcCCCCceeEEEEecCCCCCeeEEEecCCCCCcEEEEEecCCcEEEEEecCCCCeeeeeecccCCCCeEEEEeCCCC
Q 022111           82 IIWKEGNQNDWTQAHTFNDHKSSVNSIAWAPHELGLSLACGSSDGNISVFTATADGGWDTTRIDQAHPVGVTSVSWAPAM  161 (302)
Q Consensus        82 ~iwd~~~~~~~~~~~~~~~h~~~i~~l~~~pd~~~~~l~sg~~d~~v~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~  161 (302)
                      ++||++++.   .+..+.+|.+.|.+++|+|+  +.+|++|+.|++|++||++....  ......+|...|.+++|+|..
T Consensus        80 ~vwd~~~~~---~~~~~~~h~~~v~~~~~~~~--~~~l~sgs~D~~v~lWd~~~~~~--~~~~~~~h~~~v~~v~~~p~~  152 (304)
T 2ynn_A           80 RVFNYNTGE---KVVDFEAHPDYIRSIAVHPT--KPYVLSGSDDLTVKLWNWENNWA--LEQTFEGHEHFVMCVAFNPKD  152 (304)
T ss_dssp             EEEETTTCC---EEEEEECCSSCEEEEEECSS--SSEEEEEETTSCEEEEEGGGTTE--EEEEECCCCSCEEEEEECTTC
T ss_pred             EEEECCCCc---EEEEEeCCCCcEEEEEEcCC--CCEEEEECCCCeEEEEECCCCcc--hhhhhcccCCcEEEEEECCCC
Confidence            999997763   56778899999999999998  56999999999999999875422  222224799999999999843


Q ss_pred             CCCceeecccCCCceeEEEeeCCCcEEEEEEecCccccccccccccCCCceeEEEeeCCCCCCccEEEEEecCCeEEEEE
Q 022111          162 APGALVGLGLLDPVQKLASCGCDNTVKVWKMYNGIWKMDCFPALQMHSDWVRSVAWAPNLGLPKSTIASASQDGTVVIWT  241 (302)
Q Consensus       162 ~~~~~~~~~~~~~~~~l~s~~~D~~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~l~s~s~D~~i~iwd  241 (302)
                                   +..|++|+.|++|++||+......   .....+|...|..++|+|..  ++.+|++|+.|++|++||
T Consensus       153 -------------~~~l~sgs~D~~v~iwd~~~~~~~---~~~~~~~~~~v~~~~~~~~~--~~~~l~s~s~D~~i~iWd  214 (304)
T 2ynn_A          153 -------------PSTFASGCLDRTVKVWSLGQSTPN---FTLTTGQERGVNYVDYYPLP--DKPYMITASDDLTIKIWD  214 (304)
T ss_dssp             -------------TTEEEEEETTSEEEEEETTCSSCS---EEEECCCTTCEEEEEECCST--TCCEEEEEETTSEEEEEE
T ss_pred             -------------CCEEEEEeCCCeEEEEECCCCCcc---ceeccCCcCcEEEEEEEEcC--CCCEEEEEcCCCeEEEEe
Confidence                         368999999999999999765321   11224577889999998853  247899999999999999


Q ss_pred             eccCCcceeeeeeccCCCcEEEEEEccCCCEEEEecCC-ceEEeeecCCc
Q 022111          242 CAKEGEQWEGRVLKDFKTPVWSVSWSLTGNLLAVADAN-NVTLWKEAVDG  290 (302)
Q Consensus       242 ~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~la~~~~d-~i~~w~~~~~~  290 (302)
                      ++...   ....+.+|...|.+++|+|++++|++++.| .|++|+.....
T Consensus       215 ~~~~~---~~~~~~~h~~~v~~~~~~p~~~~l~s~s~Dg~i~iWd~~~~~  261 (304)
T 2ynn_A          215 YQTKS---CVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYK  261 (304)
T ss_dssp             TTTTE---EEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCC
T ss_pred             CCCCc---cceeeCCCCCCEEEEEECCCCCEEEEEcCCCeEEEEECCCCc
Confidence            97642   123456788899999999999999999999 79999976433

>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}

Probab=100.00  E-value=1.8e-41  Score=297.68  Aligned_cols=248  Identities=18%  Similarity=0.198  Sum_probs=200.6

Q ss_pred             ccccceeEEEEccCCCEEEEeeCCCcEEEEeecCCCceE--EEEecCcccCeEEEEeeCCCCCCEEEEEeCCCeEEEEEc
Q 022111            9 GHEDTVHDVAMDFYGKRLATASSDSSIKIIGLSNSASQH--LATLKGHRGPVWQVAWAHPKFGSILASCSYDGQVIIWKE   86 (302)
Q Consensus         9 ~h~~~v~~~~~s~~~~~l~s~~~d~~v~lw~~~~~~~~~--~~~~~~h~~~v~~v~~~~~~~~~~l~s~s~D~~i~iwd~   86 (302)
                      .|+..|++++|++++ .|++|+.||+|+|||+..+....  ...+.+|.+.|++++|+++  +++|++|+.|++|++||+
T Consensus        80 ~~~~~v~~~~~s~d~-~l~~~s~dg~v~lWd~~~~~~~~~~~~~~~~H~~~V~~v~~spd--g~~l~sgs~d~~i~iwd~  156 (344)
T 4gqb_B           80 QTEAGVADLTWVGER-GILVASDSGAVELWELDENETLIVSKFCKYEHDDIVSTVSVLSS--GTQAVSGSKDICIKVWDL  156 (344)
T ss_dssp             EESSCEEEEEEETTT-EEEEEETTSEEEEEEECTTSSCEEEEEEEECCSSCEEEEEECTT--SSEEEEEETTSCEEEEET
T ss_pred             ccCCCEEEEEEeCCC-eEEEEECCCEEEEEeccCCCceeEeeccccCCCCCEEEEEECCC--CCEEEEEeCCCeEEEEEC
Confidence            356789999999986 78899999999999997644222  2345689999999999864  899999999999999999


Q ss_pred             CCCCceeEEEEecCCCCCeeEEEecCCCCCcEEEEEecCCcEEEEEecCCCCeeeeeecccCCCCeEEEEeCCCCCCCce
Q 022111           87 GNQNDWTQAHTFNDHKSSVNSIAWAPHELGLSLACGSSDGNISVFTATADGGWDTTRIDQAHPVGVTSVSWAPAMAPGAL  166 (302)
Q Consensus        87 ~~~~~~~~~~~~~~h~~~i~~l~~~pd~~~~~l~sg~~d~~v~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~  166 (302)
                      +++   .++.++.+|.+.|.+++|+|+. ..++++|+.|++|++||++.......... ..|...+.+++|+|..     
T Consensus       157 ~~~---~~~~~~~~h~~~V~~~~~~~~~-~~~l~s~s~D~~v~iwd~~~~~~~~~~~~-~~~~~~~~~~~~~p~~-----  226 (344)
T 4gqb_B          157 AQQ---VVLSSYRAHAAQVTCVAASPHK-DSVFLSCSEDNRILLWDTRCPKPASQIGC-SAPGYLPTSLAWHPQQ-----  226 (344)
T ss_dssp             TTT---EEEEEECCCSSCEEEEEECSSC-TTEEEEEETTSCEEEEETTSSSCEEECC-----CCCEEEEEECSSC-----
T ss_pred             CCC---cEEEEEcCcCCceEEEEecCCC-CCceeeeccccccccccccccceeeeeec-ceeeccceeeeecCCC-----
Confidence            775   4678899999999999999984 34789999999999999976543322211 2455678999999854     


Q ss_pred             eecccCCCceeEEEeeCCCcEEEEEEecCccccccccccccCCCceeEEEeeCCCCCCccEEEEEecCCeEEEEEeccCC
Q 022111          167 VGLGLLDPVQKLASCGCDNTVKVWKMYNGIWKMDCFPALQMHSDWVRSVAWAPNLGLPKSTIASASQDGTVVIWTCAKEG  246 (302)
Q Consensus       167 ~~~~~~~~~~~l~s~~~D~~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~l~s~s~D~~i~iwd~~~~~  246 (302)
                              +.+|++|+.|++|+|||++++    +++..+.+|...|++++|+|++   ..+|++|+.|++|+|||++...
T Consensus       227 --------~~~l~sg~~dg~v~~wd~~~~----~~~~~~~~h~~~v~~v~fsp~g---~~~lasgs~D~~i~vwd~~~~~  291 (344)
T 4gqb_B          227 --------SEVFVFGDENGTVSLVDTKST----SCVLSSAVHSQCVTGLVFSPHS---VPFLASLSEDCSLAVLDSSLSE  291 (344)
T ss_dssp             --------TTEEEEEETTSEEEEEESCC------CCEEEECCSSCEEEEEECSSS---SCCEEEEETTSCEEEECTTCCE
T ss_pred             --------CcceEEeccCCcEEEEECCCC----cEEEEEcCCCCCEEEEEEccCC---CeEEEEEeCCCeEEEEECCCCc
Confidence                    468899999999999999876    4567789999999999999986   3579999999999999987532


Q ss_pred             cceeeeeeccCCCcEEEEEEccCCC-EEEEecCC-ceEEeeecC
Q 022111          247 EQWEGRVLKDFKTPVWSVSWSLTGN-LLAVADAN-NVTLWKEAV  288 (302)
Q Consensus       247 ~~~~~~~~~~~~~~v~~~~~spdg~-~la~~~~d-~i~~w~~~~  288 (302)
                          ...+.+|...|++++|||+|+ +|++++.| .|++|+...
T Consensus       292 ----~~~~~~H~~~V~~v~~sp~~~~llas~s~D~~v~~w~v~~  331 (344)
T 4gqb_B          292 ----LFRSQAHRDFVRDATWSPLNHSLLTTVGWDHQVVHHVVPT  331 (344)
T ss_dssp             ----EEEECCCSSCEEEEEECSSSTTEEEEEETTSCEEEEECCC
T ss_pred             ----EEEEcCCCCCEEEEEEeCCCCeEEEEEcCCCeEEEEECCC
Confidence                123467889999999999986 56788878 799999864

>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}

Probab=100.00  E-value=4.3e-41  Score=296.29  Aligned_cols=292  Identities=46%  Similarity=0.828  Sum_probs=230.3

Q ss_pred             cccccccccceeEEEEccCCCEEEEeeCCCcEEEEeecCCCceEEEEecCcccCeEEEEeeCCCCCCEEEEEeCCCeEEE
Q 022111            4 QKIETGHEDTVHDVAMDFYGKRLATASSDSSIKIIGLSNSASQHLATLKGHRGPVWQVAWAHPKFGSILASCSYDGQVII   83 (302)
Q Consensus         4 ~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~s~D~~i~i   83 (302)
                      .+++.+|.+.|++++|+|++++||+|+.|+.|++|++.....+.+..+.+|.+.|++++|+++.++++|++++.|++|++
T Consensus         4 ~~~~~~h~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~v~i   83 (379)
T 3jrp_A            4 VVIANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLI   83 (379)
T ss_dssp             -CCEEECCCCEEEEEECSSSSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSCEEE
T ss_pred             cEEecCCcccEEEEEEcCCCCEEEEEECCCcEEEEecCCCcceeeeEecCCCCcEEEEEeCCCCCCCEEEEeccCCEEEE
Confidence            45678999999999999999999999999999999997655667778899999999999986544789999999999999


Q ss_pred             EEcCCCCceeEEEEecCCCCCeeEEEecCCCCCcEEEEEecCCcEEEEEecCCCCeeeeeecccCCCCeEEEEeCCCCCC
Q 022111           84 WKEGNQNDWTQAHTFNDHKSSVNSIAWAPHELGLSLACGSSDGNISVFTATADGGWDTTRIDQAHPVGVTSVSWAPAMAP  163 (302)
Q Consensus        84 wd~~~~~~~~~~~~~~~h~~~i~~l~~~pd~~~~~l~sg~~d~~v~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~  163 (302)
                      ||+.+.. +.....+..|...|.+++|+|+..+.++++++.|+.|++||+..........+ ..|...|.+++|+|....
T Consensus        84 wd~~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~  161 (379)
T 3jrp_A           84 WKEENGR-WSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIII-DAHAIGVNSASWAPATIE  161 (379)
T ss_dssp             EEEETTE-EEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCTTSCCCEEEE-ECCTTCEEEEEECCCC--
T ss_pred             EEcCCCc-eeEeeeecCCCcceEEEEeCCCCCCCEEEEecCCCcEEEEecCCCCceeeEEe-cCCCCceEEEEEcCcccc
Confidence            9997652 34567788899999999999974356899999999999999986543333333 378889999999984211


Q ss_pred             CceeecccCCCceeEEEeeCCCcEEEEEEecCccccccccccccCCCceeEEEeeCCCCCCccEEEEEecCCeEEEEEec
Q 022111          164 GALVGLGLLDPVQKLASCGCDNTVKVWKMYNGIWKMDCFPALQMHSDWVRSVAWAPNLGLPKSTIASASQDGTVVIWTCA  243 (302)
Q Consensus       164 ~~~~~~~~~~~~~~l~s~~~D~~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~l~s~s~D~~i~iwd~~  243 (302)
                      ... .....+++..|++++.|+.|++||++++.....+...+.+|...|.+++|+|++ ..+..|++++.|+.|++||++
T Consensus       162 ~~~-~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~-~~~~~l~s~~~dg~i~iwd~~  239 (379)
T 3jrp_A          162 EDG-EHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTV-LLRSYLASVSQDRTCIIWTQD  239 (379)
T ss_dssp             ---------CTTCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCC-SSSEEEEEEETTSCEEEEEES
T ss_pred             ccc-cccCCCCCCEEEEEeCCCeEEEEEecCCCcceeeEEEEecccCcEeEEEECCCC-CCCCeEEEEeCCCEEEEEeCC
Confidence            000 000112357899999999999999987654444556778999999999999982 002789999999999999998


Q ss_pred             cCCcceeeeee--ccCCCcEEEEEEccCCCEEEEecCC-ceEEeeecCCceEEEeeecC
Q 022111          244 KEGEQWEGRVL--KDFKTPVWSVSWSLTGNLLAVADAN-NVTLWKEAVDGEWQQVSVVE  299 (302)
Q Consensus       244 ~~~~~~~~~~~--~~~~~~v~~~~~spdg~~la~~~~d-~i~~w~~~~~~~~~~~~~~~  299 (302)
                      ...........  ..+...|++++|+|+|++|++++.| .|++|+....+.|++...+.
T Consensus       240 ~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~  298 (379)
T 3jrp_A          240 NEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKENLEGKWEPAGEVH  298 (379)
T ss_dssp             STTSCCEEEESSSSCCSSCEEEEEECSSSCCEEEEESSSSEEEEEEEETTEEEEEEEEC
T ss_pred             CCCccceeeeeccccCCCcEEEEEEcCCCCEEEEecCCCcEEEEeCCCCCcccccccee
Confidence            64322222222  3467789999999999999999888 79999998888888877654

>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}

Probab=100.00  E-value=8.2e-41  Score=293.34  Aligned_cols=265  Identities=27%  Similarity=0.472  Sum_probs=211.8

Q ss_pred             ccccccceeEEEEccCCCEEEEeeCCCcEEEEeecCCCceEEEEecCcccCeEEEEeeCCCCCCEEEEEeCCCeEEEEEc
Q 022111            7 ETGHEDTVHDVAMDFYGKRLATASSDSSIKIIGLSNSASQHLATLKGHRGPVWQVAWAHPKFGSILASCSYDGQVIIWKE   86 (302)
Q Consensus         7 ~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~s~D~~i~iwd~   86 (302)
                      ..+|...|++++|+|++++||+|+.|++++||++.....+.+..+.+|...|.+++|+++  +++|++|+.|++|++||+
T Consensus        57 ~~~h~~~v~~~~~sp~g~~l~s~s~D~~v~iw~~~~~~~~~~~~~~~h~~~v~~v~~sp~--~~~l~s~s~D~~v~iwd~  134 (345)
T 3fm0_A           57 SEGHQRTVRKVAWSPCGNYLASASFDATTCIWKKNQDDFECVTTLEGHENEVKSVAWAPS--GNLLATCSRDKSVWVWEV  134 (345)
T ss_dssp             CSSCSSCEEEEEECTTSSEEEEEETTSCEEEEEECCC-EEEEEEECCCSSCEEEEEECTT--SSEEEEEETTSCEEEEEE
T ss_pred             ccccCCcEEEEEECCCCCEEEEEECCCcEEEEEccCCCeEEEEEccCCCCCceEEEEeCC--CCEEEEEECCCeEEEEEC
Confidence            468999999999999999999999999999999876555667889999999999999864  899999999999999999


Q ss_pred             CCCCceeEEEEecCCCCCeeEEEecCCCCCcEEEEEecCCcEEEEEecCCCCeeeeeecccCCCCeEEEEeCCCCCCCce
Q 022111           87 GNQNDWTQAHTFNDHKSSVNSIAWAPHELGLSLACGSSDGNISVFTATADGGWDTTRIDQAHPVGVTSVSWAPAMAPGAL  166 (302)
Q Consensus        87 ~~~~~~~~~~~~~~h~~~i~~l~~~pd~~~~~l~sg~~d~~v~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~  166 (302)
                      +..........+..|...|.+++|+|+  +.+|++|+.|+.|++|+...........+ .+|...|.+++|+|++     
T Consensus       135 ~~~~~~~~~~~~~~h~~~v~~~~~~p~--~~~l~s~s~d~~i~~w~~~~~~~~~~~~~-~~h~~~v~~l~~sp~g-----  206 (345)
T 3fm0_A          135 DEEDEYECVSVLNSHTQDVKHVVWHPS--QELLASASYDDTVKLYREEEDDWVCCATL-EGHESTVWSLAFDPSG-----  206 (345)
T ss_dssp             CTTSCEEEEEEECCCCSCEEEEEECSS--SSCEEEEETTSCEEEEEEETTEEEEEEEE-CCCSSCEEEEEECTTS-----
T ss_pred             CCCCCeEEEEEecCcCCCeEEEEECCC--CCEEEEEeCCCcEEEEEecCCCEEEEEEe-cCCCCceEEEEECCCC-----
Confidence            776555567788899999999999998  66899999999999999875422222334 3899999999999864     


Q ss_pred             eecccCCCceeEEEeeCCCcEEEEEEecCccc-----------ccccccccc-CCCceeEEEeeCCCCCCccEEEEEecC
Q 022111          167 VGLGLLDPVQKLASCGCDNTVKVWKMYNGIWK-----------MDCFPALQM-HSDWVRSVAWAPNLGLPKSTIASASQD  234 (302)
Q Consensus       167 ~~~~~~~~~~~l~s~~~D~~v~iwd~~~~~~~-----------~~~~~~~~~-h~~~v~~v~~~p~~~~~~~~l~s~s~D  234 (302)
                               .+|++|+.|++|+|||.......           ..++..+.+ |...|.+++|+|++    ..|++++.|
T Consensus       207 ---------~~l~s~s~D~~v~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~----~~l~s~~~d  273 (345)
T 3fm0_A          207 ---------QRLASCSDDRTVRIWRQYLPGNEQGVACSGSDPSWKCICTLSGFHSRTIYDIAWCQLT----GALATACGD  273 (345)
T ss_dssp             ---------SEEEEEETTSCEEEEEEECTTCTTCCCCC---CEEEEEEEECSSCSSCEEEEEECTTT----CCEEEEETT
T ss_pred             ---------CEEEEEeCCCeEEEeccccCCCCccceeeccCCccceeEEecCCCCCcEEEEEEecCC----CEEEEEeCC
Confidence                     78999999999999998543111           122334444 88999999999985    679999999


Q ss_pred             CeEEEEEeccCCccee------eeeeccCCCcEEEEEEccCC-CEEEEecCC-ceEEeeecCCceEEE
Q 022111          235 GTVVIWTCAKEGEQWE------GRVLKDFKTPVWSVSWSLTG-NLLAVADAN-NVTLWKEAVDGEWQQ  294 (302)
Q Consensus       235 ~~i~iwd~~~~~~~~~------~~~~~~~~~~v~~~~~spdg-~~la~~~~d-~i~~w~~~~~~~~~~  294 (302)
                      +.|++|+.+.......      ......|...|.+++|+|++ .+||+++.| .|++|+.....+..+
T Consensus       274 ~~i~vw~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~laS~s~Dg~v~~W~~~~~~~~~~  341 (345)
T 3fm0_A          274 DAIRVFQEDPNSDPQQPTFSLTAHLHQAHSQDVNCVAWNPKEPGLLASCSDDGEVAFWKYQRPEGLHH  341 (345)
T ss_dssp             SCEEEEEECTTSCTTSCCEEEEEEETTSSSSCEEEEEECSSSTTEEEEEETTSCEEEEEECC------
T ss_pred             CeEEEEEeCCCCCcceeeEEEEeeecccccCcEeEeEEeCCCceEEEEcCCCCcEEEEEecCCCCccc
Confidence            9999999865321111      11234678899999999998 599999988 799999876554433

>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}

Probab=100.00  E-value=1.5e-40  Score=291.69  Aligned_cols=259  Identities=29%  Similarity=0.490  Sum_probs=210.1

Q ss_pred             cccccccc-ceeEEEEccCCCEEEEeeCCCcEEEEeecCCCceEEE-EecCcccCeEEEEeeCCCCCCEEEEEeCCCeEE
Q 022111            5 KIETGHED-TVHDVAMDFYGKRLATASSDSSIKIIGLSNSASQHLA-TLKGHRGPVWQVAWAHPKFGSILASCSYDGQVI   82 (302)
Q Consensus         5 ~~~~~h~~-~v~~~~~s~~~~~l~s~~~d~~v~lw~~~~~~~~~~~-~~~~h~~~v~~v~~~~~~~~~~l~s~s~D~~i~   82 (302)
                      +.+.+|.+ .|+.++|+|+|++||+|+.|++|+||++......... ...+|...|.+++|+|+  +++|++|+.|++++
T Consensus         9 ~~~~~h~~~~v~~l~~sp~g~~las~~~D~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~sp~--g~~l~s~s~D~~v~   86 (345)
T 3fm0_A            9 GRVPAHPDSRCWFLAWNPAGTLLASCGGDRRIRIWGTEGDSWICKSVLSEGHQRTVRKVAWSPC--GNYLASASFDATTC   86 (345)
T ss_dssp             EEECCSTTSCEEEEEECTTSSCEEEEETTSCEEEEEEETTEEEEEEEECSSCSSCEEEEEECTT--SSEEEEEETTSCEE
T ss_pred             eeecCCCCCcEEEEEECCCCCEEEEEcCCCeEEEEEcCCCcceeeeeeccccCCcEEEEEECCC--CCEEEEEECCCcEE
Confidence            34668988 9999999999999999999999999999764322222 23689999999999874  89999999999999


Q ss_pred             EEEcCCCCceeEEEEecCCCCCeeEEEecCCCCCcEEEEEecCCcEEEEEecCCCCeeeeeecccCCCCeEEEEeCCCCC
Q 022111           83 IWKEGNQNDWTQAHTFNDHKSSVNSIAWAPHELGLSLACGSSDGNISVFTATADGGWDTTRIDQAHPVGVTSVSWAPAMA  162 (302)
Q Consensus        83 iwd~~~~~~~~~~~~~~~h~~~i~~l~~~pd~~~~~l~sg~~d~~v~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~  162 (302)
                      +||.... ...+...+.+|...|.+++|+|+  +.+|++|+.|++|++||+..............|...|.+++|+|++ 
T Consensus        87 iw~~~~~-~~~~~~~~~~h~~~v~~v~~sp~--~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~p~~-  162 (345)
T 3fm0_A           87 IWKKNQD-DFECVTTLEGHENEVKSVAWAPS--GNLLATCSRDKSVWVWEVDEEDEYECVSVLNSHTQDVKHVVWHPSQ-  162 (345)
T ss_dssp             EEEECCC--EEEEEEECCCSSCEEEEEECTT--SSEEEEEETTSCEEEEEECTTSCEEEEEEECCCCSCEEEEEECSSS-
T ss_pred             EEEccCC-CeEEEEEccCCCCCceEEEEeCC--CCEEEEEECCCeEEEEECCCCCCeEEEEEecCcCCCeEEEEECCCC-
Confidence            9998654 23466788999999999999998  6799999999999999997654433333334789999999999864 


Q ss_pred             CCceeecccCCCceeEEEeeCCCcEEEEEEecCccccccccccccCCCceeEEEeeCCCCCCccEEEEEecCCeEEEEEe
Q 022111          163 PGALVGLGLLDPVQKLASCGCDNTVKVWKMYNGIWKMDCFPALQMHSDWVRSVAWAPNLGLPKSTIASASQDGTVVIWTC  242 (302)
Q Consensus       163 ~~~~~~~~~~~~~~~l~s~~~D~~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~l~s~s~D~~i~iwd~  242 (302)
                                   .+|++|+.|++|++||+.++.+  .+...+.+|...|.+++|+|++    ++|++++.|++|+|||.
T Consensus       163 -------------~~l~s~s~d~~i~~w~~~~~~~--~~~~~~~~h~~~v~~l~~sp~g----~~l~s~s~D~~v~iW~~  223 (345)
T 3fm0_A          163 -------------ELLASASYDDTVKLYREEEDDW--VCCATLEGHESTVWSLAFDPSG----QRLASCSDDRTVRIWRQ  223 (345)
T ss_dssp             -------------SCEEEEETTSCEEEEEEETTEE--EEEEEECCCSSCEEEEEECTTS----SEEEEEETTSCEEEEEE
T ss_pred             -------------CEEEEEeCCCcEEEEEecCCCE--EEEEEecCCCCceEEEEECCCC----CEEEEEeCCCeEEEecc
Confidence                         7899999999999999987532  2345778999999999999985    78999999999999997


Q ss_pred             ccCCcc-----------ee--eeeeccCCCcEEEEEEccCCCEEEEecCC-ceEEeeecC
Q 022111          243 AKEGEQ-----------WE--GRVLKDFKTPVWSVSWSLTGNLLAVADAN-NVTLWKEAV  288 (302)
Q Consensus       243 ~~~~~~-----------~~--~~~~~~~~~~v~~~~~spdg~~la~~~~d-~i~~w~~~~  288 (302)
                      ......           +.  ..+...+...|++++|+|++..|++++.| .|++|+...
T Consensus       224 ~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~i~vw~~~~  283 (345)
T 3fm0_A          224 YLPGNEQGVACSGSDPSWKCICTLSGFHSRTIYDIAWCQLTGALATACGDDAIRVFQEDP  283 (345)
T ss_dssp             ECTTCTTCCCCC---CEEEEEEEECSSCSSCEEEEEECTTTCCEEEEETTSCEEEEEECT
T ss_pred             ccCCCCccceeeccCCccceeEEecCCCCCcEEEEEEecCCCEEEEEeCCCeEEEEEeCC
Confidence            542211           00  01112366789999999999999999888 799998743

>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}

Probab=100.00  E-value=1.5e-40  Score=289.00  Aligned_cols=248  Identities=21%  Similarity=0.352  Sum_probs=209.1

Q ss_pred             ccccccceeEEEEccC----CCEEEEeeCCCcEEEEeecCCCceEEEEecCcccCeEEEEeeCCCCCCEEEEEeCCCeEE
Q 022111            7 ETGHEDTVHDVAMDFY----GKRLATASSDSSIKIIGLSNSASQHLATLKGHRGPVWQVAWAHPKFGSILASCSYDGQVI   82 (302)
Q Consensus         7 ~~~h~~~v~~~~~s~~----~~~l~s~~~d~~v~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~s~D~~i~   82 (302)
                      ..+|.+.|++++|+++    +++|+||+.|++|+||++..........+.+|...|.+++|+++  +.++++++.|++|+
T Consensus        28 ~~~H~~~V~~v~~~~~~~~~~~~l~tgs~D~~v~vW~~~~~~~~~~~~l~gh~~~v~~~~~~~~--~~~l~s~s~D~~i~  105 (321)
T 3ow8_A           28 EQAHDDAIWSVAWGTNKKENSETVVTGSLDDLVKVWKWRDERLDLQWSLEGHQLGVVSVDISHT--LPIAASSSLDAHIR  105 (321)
T ss_dssp             TTSSSSCEEEEEEC-------CEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECSS--SSEEEEEETTSEEE
T ss_pred             cccCCCcEEEEEEecCCCCCCCEEEEEcCCCCEEEEECCCCCeeeeeeeccCCCCEEEEEECCC--CCEEEEEeCCCcEE
Confidence            5689999999999875    57999999999999999976544455678999999999999864  78999999999999


Q ss_pred             EEEcCCCCceeEEEEecCCCCCeeEEEecCCCCCcEEEEEecCCcEEEEEecCCCCeeeeeecccCCCCeEEEEeCCCCC
Q 022111           83 IWKEGNQNDWTQAHTFNDHKSSVNSIAWAPHELGLSLACGSSDGNISVFTATADGGWDTTRIDQAHPVGVTSVSWAPAMA  162 (302)
Q Consensus        83 iwd~~~~~~~~~~~~~~~h~~~i~~l~~~pd~~~~~l~sg~~d~~v~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~  162 (302)
                      +||++++   ..+..+..|...+.+++|+|+  +.+|++|+.|+.|++|++.....  ...+. .|...+.+++|+|++ 
T Consensus       106 lWd~~~~---~~~~~~~~~~~~~~~~~~spd--g~~l~~g~~dg~v~i~~~~~~~~--~~~~~-~~~~~v~~~~~spdg-  176 (321)
T 3ow8_A          106 LWDLENG---KQIKSIDAGPVDAWTLAFSPD--SQYLATGTHVGKVNIFGVESGKK--EYSLD-TRGKFILSIAYSPDG-  176 (321)
T ss_dssp             EEETTTT---EEEEEEECCTTCCCCEEECTT--SSEEEEECTTSEEEEEETTTCSE--EEEEE-CSSSCEEEEEECTTS-
T ss_pred             EEECCCC---CEEEEEeCCCccEEEEEECCC--CCEEEEEcCCCcEEEEEcCCCce--eEEec-CCCceEEEEEECCCC-
Confidence            9999775   356677788899999999998  67999999999999999875432  22332 577789999999864 


Q ss_pred             CCceeecccCCCceeEEEeeCCCcEEEEEEecCccccccccccccCCCceeEEEeeCCCCCCccEEEEEecCCeEEEEEe
Q 022111          163 PGALVGLGLLDPVQKLASCGCDNTVKVWKMYNGIWKMDCFPALQMHSDWVRSVAWAPNLGLPKSTIASASQDGTVVIWTC  242 (302)
Q Consensus       163 ~~~~~~~~~~~~~~~l~s~~~D~~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~l~s~s~D~~i~iwd~  242 (302)
                                   ++|++|+.|+.|++||+.++    .++..+.+|...|++++|+|++    .+|++++.|++|++||+
T Consensus       177 -------------~~lasg~~dg~i~iwd~~~~----~~~~~~~~h~~~v~~l~~spd~----~~l~s~s~dg~i~iwd~  235 (321)
T 3ow8_A          177 -------------KYLASGAIDGIINIFDIATG----KLLHTLEGHAMPIRSLTFSPDS----QLLVTASDDGYIKIYDV  235 (321)
T ss_dssp             -------------SEEEEEETTSCEEEEETTTT----EEEEEECCCSSCCCEEEECTTS----CEEEEECTTSCEEEEET
T ss_pred             -------------CEEEEEcCCCeEEEEECCCC----cEEEEEcccCCceeEEEEcCCC----CEEEEEcCCCeEEEEEC
Confidence                         79999999999999999876    3456788999999999999985    78999999999999999


Q ss_pred             ccCCcceeeeeeccCCCcEEEEEEccCCCEEEEecCC-ceEEeeecCC
Q 022111          243 AKEGEQWEGRVLKDFKTPVWSVSWSLTGNLLAVADAN-NVTLWKEAVD  289 (302)
Q Consensus       243 ~~~~~~~~~~~~~~~~~~v~~~~~spdg~~la~~~~d-~i~~w~~~~~  289 (302)
                      +....   ...+.+|...|.+++|+|+|++|++++.| .|++|+....
T Consensus       236 ~~~~~---~~~~~~h~~~v~~~~~sp~~~~l~s~s~D~~v~iwd~~~~  280 (321)
T 3ow8_A          236 QHANL---AGTLSGHASWVLNVAFCPDDTHFVSSSSDKSVKVWDVGTR  280 (321)
T ss_dssp             TTCCE---EEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTT
T ss_pred             CCcce---eEEEcCCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCC
Confidence            75431   23456788899999999999999999998 7999998643

>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1

Probab=100.00  E-value=1e-40  Score=299.54  Aligned_cols=254  Identities=24%  Similarity=0.389  Sum_probs=214.2

Q ss_pred             cccccccccceeEEEEccCCCEEEEeeCCCcEEEEeecCCCceEEEEecCcccCeEEEEeeCCCCCCEEEEEeCCCeEEE
Q 022111            4 QKIETGHEDTVHDVAMDFYGKRLATASSDSSIKIIGLSNSASQHLATLKGHRGPVWQVAWAHPKFGSILASCSYDGQVII   83 (302)
Q Consensus         4 ~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~s~D~~i~i   83 (302)
                      ...+.+|.++|++++|+|++++|++|+.|++|+|||+..+  +....+.+|.+.|.+++|+++  +++|++|+.|++|++
T Consensus       101 ~~~l~gh~~~V~~~~~~p~~~~l~s~s~Dg~i~vwd~~~~--~~~~~l~~h~~~V~~v~~~~~--~~~l~sgs~D~~i~i  176 (410)
T 1vyh_C          101 KYALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETG--DFERTLKGHTDSVQDISFDHS--GKLLASCSADMTIKL  176 (410)
T ss_dssp             SCEEECCSSCEEEEEECSSSSEEEEEESSSCEEEEETTTC--CCCEEECCCSSCEEEEEECTT--SSEEEEEETTSCCCE
T ss_pred             eEeecccCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCC--cEEEEEeccCCcEEEEEEcCC--CCEEEEEeCCCeEEE
Confidence            3456799999999999999999999999999999998653  456788999999999999864  789999999999999


Q ss_pred             EEcCCCCceeEEEEecCCCCCeeEEEecCCCCCcEEEEEecCCcEEEEEecCCCCeeeeeecccCCCCeEEEEeCCCCCC
Q 022111           84 WKEGNQNDWTQAHTFNDHKSSVNSIAWAPHELGLSLACGSSDGNISVFTATADGGWDTTRIDQAHPVGVTSVSWAPAMAP  163 (302)
Q Consensus        84 wd~~~~~~~~~~~~~~~h~~~i~~l~~~pd~~~~~l~sg~~d~~v~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~  163 (302)
                      ||+.+.   .++.++.+|...|.+++|+|+  +..|++|+.|++|++||+.....  ...+. +|...|.++.|+|+   
T Consensus       177 wd~~~~---~~~~~~~~h~~~V~~v~~~p~--~~~l~s~s~D~~i~~wd~~~~~~--~~~~~-~h~~~v~~~~~~~~---  245 (410)
T 1vyh_C          177 WDFQGF---ECIRTMHGHDHNVSSVSIMPN--GDHIVSASRDKTIKMWEVQTGYC--VKTFT-GHREWVRMVRPNQD---  245 (410)
T ss_dssp             EETTSS---CEEECCCCCSSCEEEEEECSS--SSEEEEEETTSEEEEEETTTCCE--EEEEE-CCSSCEEEEEECTT---
T ss_pred             EeCCCC---ceeEEEcCCCCCEEEEEEeCC--CCEEEEEeCCCeEEEEECCCCcE--EEEEe-CCCccEEEEEECCC---
Confidence            999764   367788899999999999998  66999999999999999975432  23333 78889999999886   


Q ss_pred             CceeecccCCCceeEEEeeCCCcEEEEEEecCccccccccccccCCCceeEEEeeCCCCC----------------CccE
Q 022111          164 GALVGLGLLDPVQKLASCGCDNTVKVWKMYNGIWKMDCFPALQMHSDWVRSVAWAPNLGL----------------PKST  227 (302)
Q Consensus       164 ~~~~~~~~~~~~~~l~s~~~D~~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~----------------~~~~  227 (302)
                                 +.+|++|+.|++|++||+.++    .+...+.+|...|.+++|+|+..+                .+.+
T Consensus       246 -----------g~~l~s~s~D~~v~vwd~~~~----~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~  310 (410)
T 1vyh_C          246 -----------GTLIASCSNDQTVRVWVVATK----ECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPF  310 (410)
T ss_dssp             -----------SSEEEEEETTSCEEEEETTTC----CEEEEECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCE
T ss_pred             -----------CCEEEEEcCCCeEEEEECCCC----ceeeEecCCCceEEEEEEcCcccccchhhhccccccccCCCCCE
Confidence                       478999999999999999876    345667899999999999997321                1468


Q ss_pred             EEEEecCCeEEEEEeccCCcceeeeeeccCCCcEEEEEEccCCCEEEEecCC-ceEEeeecCCc
Q 022111          228 IASASQDGTVVIWTCAKEGEQWEGRVLKDFKTPVWSVSWSLTGNLLAVADAN-NVTLWKEAVDG  290 (302)
Q Consensus       228 l~s~s~D~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~la~~~~d-~i~~w~~~~~~  290 (302)
                      |++|+.|++|++||++...   ....+.+|...|.+++|+|+|++|++++.| .|++|+.....
T Consensus       311 l~sgs~D~~i~iwd~~~~~---~~~~~~~h~~~v~~v~~~~~g~~l~s~s~D~~i~vwd~~~~~  371 (410)
T 1vyh_C          311 LLSGSRDKTIKMWDVSTGM---CLMTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKR  371 (410)
T ss_dssp             EEEEETTSEEEEEETTTTE---EEEEEECCSSCEEEEEECSSSSCEEEEETTTEEEEECCTTSC
T ss_pred             EEEEeCCCeEEEEECCCCc---eEEEEECCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCc
Confidence            9999999999999997542   123346788899999999999999999998 69999985443

>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*

Probab=100.00  E-value=1e-39  Score=283.33  Aligned_cols=253  Identities=23%  Similarity=0.311  Sum_probs=207.7

Q ss_pred             ccccccccceeEEEEccCC-CEEEEeeCCCcEEEEeecCCC---ceEEEEecCcccCeEEEEeeCCCCCCEEEEEeCCCe
Q 022111            5 KIETGHEDTVHDVAMDFYG-KRLATASSDSSIKIIGLSNSA---SQHLATLKGHRGPVWQVAWAHPKFGSILASCSYDGQ   80 (302)
Q Consensus         5 ~~~~~h~~~v~~~~~s~~~-~~l~s~~~d~~v~lw~~~~~~---~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~s~D~~   80 (302)
                      .++.+|++.|++++|+|++ ++|+||+.|++|++|++....   ..++..+.+|...|.+++|+++  +++|++|+.|++
T Consensus        11 ~~l~gH~~~V~~l~~~~~~~~~l~s~s~D~~v~~W~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~d--g~~l~s~s~D~~   88 (319)
T 3frx_A           11 GTLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTAD--GAYALSASWDKT   88 (319)
T ss_dssp             EEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEEEEEETTEEEEEEEEEECCSSCEEEEEECTT--SSEEEEEETTSE
T ss_pred             EEEccccceEEEEEccCCCccEEEEecCCccEEEecCCCCCccccccceEEeCCcccEEEEEECCC--CCEEEEEeCCCE
Confidence            4577999999999999865 899999999999999985322   3456788999999999999864  899999999999


Q ss_pred             EEEEEcCCCCceeEEEEecCCCCCeeEEEecCCCCCcEEEEEecCCcEEEEEecCCCCeeeeeecccCCCCeEEEEeCCC
Q 022111           81 VIIWKEGNQNDWTQAHTFNDHKSSVNSIAWAPHELGLSLACGSSDGNISVFTATADGGWDTTRIDQAHPVGVTSVSWAPA  160 (302)
Q Consensus        81 i~iwd~~~~~~~~~~~~~~~h~~~i~~l~~~pd~~~~~l~sg~~d~~v~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~  160 (302)
                      |++||++++   .....+.+|...|.+++|+|+  +.+|++|+.|++|++||+...   ....+ .+|...+.++.|.|.
T Consensus        89 v~~wd~~~~---~~~~~~~~h~~~v~~~~~~~~--~~~l~s~s~D~~i~vwd~~~~---~~~~~-~~h~~~v~~~~~~~~  159 (319)
T 3frx_A           89 LRLWDVATG---ETYQRFVGHKSDVMSVDIDKK--ASMIISGSRDKTIKVWTIKGQ---CLATL-LGHNDWVSQVRVVPN  159 (319)
T ss_dssp             EEEEETTTT---EEEEEEECCSSCEEEEEECTT--SCEEEEEETTSCEEEEETTSC---EEEEE-CCCSSCEEEEEECCC
T ss_pred             EEEEECCCC---CeeEEEccCCCcEEEEEEcCC--CCEEEEEeCCCeEEEEECCCC---eEEEE-eccCCcEEEEEEccC
Confidence            999999775   366788899999999999998  669999999999999998632   22333 378899999999985


Q ss_pred             CCCCceeecccCCCceeEEEeeCCCcEEEEEEecCccccccccccccCCCceeEEEeeCCCCCCccEEEEEecCCeEEEE
Q 022111          161 MAPGALVGLGLLDPVQKLASCGCDNTVKVWKMYNGIWKMDCFPALQMHSDWVRSVAWAPNLGLPKSTIASASQDGTVVIW  240 (302)
Q Consensus       161 ~~~~~~~~~~~~~~~~~l~s~~~D~~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~l~s~s~D~~i~iw  240 (302)
                      ...        .+++..|++++.|++|++||+++.    .....+.+|...|++++|+|++    .+|++++.|++|+||
T Consensus       160 ~~~--------~~~~~~l~s~~~d~~i~~wd~~~~----~~~~~~~~h~~~v~~~~~sp~g----~~l~s~~~dg~i~iw  223 (319)
T 3frx_A          160 EKA--------DDDSVTIISAGNDKMVKAWNLNQF----QIEADFIGHNSNINTLTASPDG----TLIASAGKDGEIMLW  223 (319)
T ss_dssp             --------------CCEEEEEETTSCEEEEETTTT----EEEEEECCCCSCEEEEEECTTS----SEEEEEETTCEEEEE
T ss_pred             CCC--------CCCccEEEEEeCCCEEEEEECCcc----hhheeecCCCCcEEEEEEcCCC----CEEEEEeCCCeEEEE
Confidence            421        112458999999999999999765    3445678999999999999995    789999999999999


Q ss_pred             EeccCCcceeeeeeccCCCcEEEEEEccCCCEEEEecCCceEEeeecC
Q 022111          241 TCAKEGEQWEGRVLKDFKTPVWSVSWSLTGNLLAVADANNVTLWKEAV  288 (302)
Q Consensus       241 d~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~la~~~~d~i~~w~~~~  288 (302)
                      |++.....   ..+ ....+|.+++|+|+|.+|+++..+++++|+...
T Consensus       224 d~~~~~~~---~~~-~~~~~v~~~~~sp~~~~la~~~~~~i~v~~~~~  267 (319)
T 3frx_A          224 NLAAKKAM---YTL-SAQDEVFSLAFSPNRYWLAAATATGIKVFSLDP  267 (319)
T ss_dssp             ETTTTEEE---EEE-ECCSCEEEEEECSSSSEEEEEETTEEEEEEETT
T ss_pred             ECCCCcEE---EEe-cCCCcEEEEEEcCCCCEEEEEcCCCcEEEEeCc
Confidence            99764211   112 234689999999999999999888999999754

>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.3e-39  Score=284.07  Aligned_cols=266  Identities=28%  Similarity=0.531  Sum_probs=203.2

Q ss_pred             cccccccccceeEEEEccCCCEEEEeeCCCcEEEEeecCCCceEEEEe-cC-cccCeEEEEeeCCCCCCEEEEEeCCCeE
Q 022111            4 QKIETGHEDTVHDVAMDFYGKRLATASSDSSIKIIGLSNSASQHLATL-KG-HRGPVWQVAWAHPKFGSILASCSYDGQV   81 (302)
Q Consensus         4 ~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~lw~~~~~~~~~~~~~-~~-h~~~v~~v~~~~~~~~~~l~s~s~D~~i   81 (302)
                      .+.+.+|++.|++++|+++  +||+|+.|++|++|++.......+..+ .+ |.+.|++++|+|+  +++|++|+.|++|
T Consensus         7 ~~~~~~h~~~v~~~~~s~~--~las~~~D~~i~lw~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~--~~~las~s~D~~v   82 (330)
T 2hes_X            7 IKSLKLYKEKIWSFDFSQG--ILATGSTDRKIKLVSVKYDDFTLIDVLDETAHKKAIRSVAWRPH--TSLLAAGSFDSTV   82 (330)
T ss_dssp             EEEEECCSSCEEEEEEETT--EEEEEESSSCEEEEECSSSCCEEEEEECTTCCCSCEEEEEECTT--SSEEEEEETTSCE
T ss_pred             ceeeccCCCceeeeccCCC--EEEEEcCCCEEEEEEecCCCeEEEEEEecCCccCCEEEEEECCC--CCEEEEEeCCCcE
Confidence            3456799999999999986  999999999999999975433445555 44 9999999999864  7899999999999


Q ss_pred             EEEEcCCCC----ceeEEEEecCCCCCeeEEEecCCCCCcEEEEEecCCcEEEEEecCCC-CeeeeeecccCCCCeEEEE
Q 022111           82 IIWKEGNQN----DWTQAHTFNDHKSSVNSIAWAPHELGLSLACGSSDGNISVFTATADG-GWDTTRIDQAHPVGVTSVS  156 (302)
Q Consensus        82 ~iwd~~~~~----~~~~~~~~~~h~~~i~~l~~~pd~~~~~l~sg~~d~~v~~~~~~~~~-~~~~~~~~~~h~~~v~~~~  156 (302)
                      +|||++...    .......+.+|...|.+++|+|+  +.+|++|+.|++|++||+...+ .........+|...|.+++
T Consensus        83 ~iw~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp~--g~~las~s~D~~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~  160 (330)
T 2hes_X           83 SIWAKEESADRTFEMDLLAIIEGHENEVKGVAWSND--GYYLATCSRDKSVWIWETDESGEEYECISVLQEHSQDVKHVI  160 (330)
T ss_dssp             EEEEC-------CCCEEEEEEC----CEEEEEECTT--SCEEEEEETTSCEEEEECCTTCCCCEEEEEECCCSSCEEEEE
T ss_pred             EEEEcccCcCccccceeEEEEcCCCCcEEEEEECCC--CCEEEEEeCCCEEEEEeccCCCCCeEEEEEeccCCCceEEEE
Confidence            999985321    22456778899999999999998  6799999999999999985332 2222222247999999999


Q ss_pred             eCCCCCCCceeecccCCCceeEEEeeCCCcEEEEEEecCccccccccccccCCCceeEEEeeCCCCCCccEEEEEecCCe
Q 022111          157 WAPAMAPGALVGLGLLDPVQKLASCGCDNTVKVWKMYNGIWKMDCFPALQMHSDWVRSVAWAPNLGLPKSTIASASQDGT  236 (302)
Q Consensus       157 ~~~~~~~~~~~~~~~~~~~~~l~s~~~D~~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~l~s~s~D~~  236 (302)
                      |+|++              .+|++|+.|++|++||+.++.+  .++..+.+|.+.|.+++|+|+..  +..|++++.|++
T Consensus       161 ~~p~~--------------~~l~s~s~D~~i~iW~~~~~~~--~~~~~~~~h~~~v~~~~~~~~~~--~~~l~s~s~D~~  222 (330)
T 2hes_X          161 WHPSE--------------ALLASSSYDDTVRIWKDYDDDW--ECVAVLNGHEGTVWSSDFDKTEG--VFRLCSGSDDST  222 (330)
T ss_dssp             ECSSS--------------SEEEEEETTSCEEEEEEETTEE--EEEEEECCCSSCEEEEEECCSSS--SCEEEEEETTSC
T ss_pred             ECCCC--------------CEEEEEcCCCeEEEEECCCCCe--eEEEEccCCCCcEEEEEecCCCC--eeEEEEEeCCCe
Confidence            99863              7899999999999999976532  34567889999999999999841  367999999999


Q ss_pred             EEEEEeccCCc----cee-eeeec-cCCCcEEEEEEccCCCEEEEecCC-ceEEeeecCCceEEEe
Q 022111          237 VVIWTCAKEGE----QWE-GRVLK-DFKTPVWSVSWSLTGNLLAVADAN-NVTLWKEAVDGEWQQV  295 (302)
Q Consensus       237 i~iwd~~~~~~----~~~-~~~~~-~~~~~v~~~~~spdg~~la~~~~d-~i~~w~~~~~~~~~~~  295 (302)
                      |++||++....    .+. ...+. .|..+|++++|+|++ +|++++.| .|++|+.. .++|+..
T Consensus       223 v~iw~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~~-~l~s~~~dg~v~iw~~~-~~~~~~~  286 (330)
T 2hes_X          223 VRVWKYMGDDEDDQQEWVCEAILPDVHKRQVYNVAWGFNG-LIASVGADGVLAVYEEV-DGEWKVF  286 (330)
T ss_dssp             EEEEEEEEECTTSCEEEEEEEECCSCCSSCEEEEEECTTS-CEEEEETTSCEEEEEEE-TTEEEEE
T ss_pred             EEEEEecCCCccccceeEEeeecccccccceEEEEEcCCC-EEEEEeCCCEEEEEEcC-CCceEEE
Confidence            99999875311    111 11222 377889999999776 67777777 79999975 4555443

>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}

Probab=100.00  E-value=8.3e-40  Score=285.24  Aligned_cols=257  Identities=26%  Similarity=0.373  Sum_probs=195.7

Q ss_pred             ccccceeEEEEccCCCEEEEeeCCCcEEEEeecCC-----CceEEEEecCcccCeEEEEeeCCCCCCEEEEEeCCCeEEE
Q 022111            9 GHEDTVHDVAMDFYGKRLATASSDSSIKIIGLSNS-----ASQHLATLKGHRGPVWQVAWAHPKFGSILASCSYDGQVII   83 (302)
Q Consensus         9 ~h~~~v~~~~~s~~~~~l~s~~~d~~v~lw~~~~~-----~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~s~D~~i~i   83 (302)
                      +|...|++++|+|++++||+|+.|++|+||++...     ..+.+..+.+|.+.|++++|+|+  +++||+|+.|++|++
T Consensus        56 ~h~~~v~~v~~sp~~~~las~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp~--g~~las~s~D~~v~i  133 (330)
T 2hes_X           56 AHKKAIRSVAWRPHTSLLAAGSFDSTVSIWAKEESADRTFEMDLLAIIEGHENEVKGVAWSND--GYYLATCSRDKSVWI  133 (330)
T ss_dssp             CCCSCEEEEEECTTSSEEEEEETTSCEEEEEC-------CCCEEEEEEC----CEEEEEECTT--SCEEEEEETTSCEEE
T ss_pred             CccCCEEEEEECCCCCEEEEEeCCCcEEEEEcccCcCccccceeEEEEcCCCCcEEEEEECCC--CCEEEEEeCCCEEEE
Confidence            49999999999999999999999999999998432     23456778999999999999864  899999999999999


Q ss_pred             EEcCCC-CceeEEEEecCCCCCeeEEEecCCCCCcEEEEEecCCcEEEEEecCCCCeeeeeecccCCCCeEEEEeCCCCC
Q 022111           84 WKEGNQ-NDWTQAHTFNDHKSSVNSIAWAPHELGLSLACGSSDGNISVFTATADGGWDTTRIDQAHPVGVTSVSWAPAMA  162 (302)
Q Consensus        84 wd~~~~-~~~~~~~~~~~h~~~i~~l~~~pd~~~~~l~sg~~d~~v~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~  162 (302)
                      ||++.. ....++..+.+|...|.+++|+|+  +.+|++|+.|++|++|+...........+ .+|...|.++.|+|+. 
T Consensus       134 wd~~~~~~~~~~~~~~~~h~~~v~~v~~~p~--~~~l~s~s~D~~i~iW~~~~~~~~~~~~~-~~h~~~v~~~~~~~~~-  209 (330)
T 2hes_X          134 WETDESGEEYECISVLQEHSQDVKHVIWHPS--EALLASSSYDDTVRIWKDYDDDWECVAVL-NGHEGTVWSSDFDKTE-  209 (330)
T ss_dssp             EECCTTCCCCEEEEEECCCSSCEEEEEECSS--SSEEEEEETTSCEEEEEEETTEEEEEEEE-CCCSSCEEEEEECCSS-
T ss_pred             EeccCCCCCeEEEEEeccCCCceEEEEECCC--CCEEEEEcCCCeEEEEECCCCCeeEEEEc-cCCCCcEEEEEecCCC-
Confidence            998432 334567788899999999999998  66999999999999999864321122333 3899999999999863 


Q ss_pred             CCceeecccCCCceeEEEeeCCCcEEEEEEecCcc----cccccccccc-CCCceeEEEeeCCCCCCccEEEEEecCCeE
Q 022111          163 PGALVGLGLLDPVQKLASCGCDNTVKVWKMYNGIW----KMDCFPALQM-HSDWVRSVAWAPNLGLPKSTIASASQDGTV  237 (302)
Q Consensus       163 ~~~~~~~~~~~~~~~l~s~~~D~~v~iwd~~~~~~----~~~~~~~~~~-h~~~v~~v~~~p~~~~~~~~l~s~s~D~~i  237 (302)
                                 ++..|++|+.|++|+|||+..+..    ...+...+.+ |...|.+++|+|+     ..|++++.|++|
T Consensus       210 -----------~~~~l~s~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~-----~~l~s~~~dg~v  273 (330)
T 2hes_X          210 -----------GVFRLCSGSDDSTVRVWKYMGDDEDDQQEWVCEAILPDVHKRQVYNVAWGFN-----GLIASVGADGVL  273 (330)
T ss_dssp             -----------SSCEEEEEETTSCEEEEEEEEECTTSCEEEEEEEECCSCCSSCEEEEEECTT-----SCEEEEETTSCE
T ss_pred             -----------CeeEEEEEeCCCeEEEEEecCCCccccceeEEeeecccccccceEEEEEcCC-----CEEEEEeCCCEE
Confidence                       135799999999999999975411    1122334444 9999999999976     469999999999


Q ss_pred             EEEEeccCCcceeeeeeccCCC-cEEEEEEcc--CCCEEEEecCC-ceEEeeec
Q 022111          238 VIWTCAKEGEQWEGRVLKDFKT-PVWSVSWSL--TGNLLAVADAN-NVTLWKEA  287 (302)
Q Consensus       238 ~iwd~~~~~~~~~~~~~~~~~~-~v~~~~~sp--dg~~la~~~~d-~i~~w~~~  287 (302)
                      +|||...............|.. .|.+++|+|  ++++||+|+.| .|+||+..
T Consensus       274 ~iw~~~~~~~~~~~~~~~~h~~~~v~~v~~~~~~~~~~las~s~Dg~v~~W~~~  327 (330)
T 2hes_X          274 AVYEEVDGEWKVFAKRALCHGVYEINVVKWLELNGKTILATGGDDGIVNFWSLE  327 (330)
T ss_dssp             EEEEEETTEEEEEEEESCTTTTSCEEEEEEC-----CCEEEEETTSEEEEEEC-
T ss_pred             EEEEcCCCceEEEeccccccccceEEEEEEecCCCceEEEEecCCCcEEEEEec
Confidence            9999864311111122245665 899999999  78999999999 79999964

>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}

Probab=100.00  E-value=4.5e-40  Score=285.98  Aligned_cols=245  Identities=22%  Similarity=0.394  Sum_probs=210.3

Q ss_pred             cccccccceeEEEEccCCCEEEEeeCCCcEEEEeecCCCceEEEEecCcccCeEEEEeeCCCCCCEEEEEeCCCeEEEEE
Q 022111            6 IETGHEDTVHDVAMDFYGKRLATASSDSSIKIIGLSNSASQHLATLKGHRGPVWQVAWAHPKFGSILASCSYDGQVIIWK   85 (302)
Q Consensus         6 ~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~s~D~~i~iwd   85 (302)
                      .+.+|...|.+++|++++.++++++.|++|++||+..  .+.+..+..|...+.+++|+|+  +++|++++.|+.+++|+
T Consensus        75 ~l~gh~~~v~~~~~~~~~~~l~s~s~D~~i~lWd~~~--~~~~~~~~~~~~~~~~~~~spd--g~~l~~g~~dg~v~i~~  150 (321)
T 3ow8_A           75 SLEGHQLGVVSVDISHTLPIAASSSLDAHIRLWDLEN--GKQIKSIDAGPVDAWTLAFSPD--SQYLATGTHVGKVNIFG  150 (321)
T ss_dssp             EECCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTT--TEEEEEEECCTTCCCCEEECTT--SSEEEEECTTSEEEEEE
T ss_pred             eeccCCCCEEEEEECCCCCEEEEEeCCCcEEEEECCC--CCEEEEEeCCCccEEEEEECCC--CCEEEEEcCCCcEEEEE
Confidence            4679999999999999999999999999999999865  4567778889999999999864  89999999999999999


Q ss_pred             cCCCCceeEEEEecCCCCCeeEEEecCCCCCcEEEEEecCCcEEEEEecCCCCeeeeeecccCCCCeEEEEeCCCCCCCc
Q 022111           86 EGNQNDWTQAHTFNDHKSSVNSIAWAPHELGLSLACGSSDGNISVFTATADGGWDTTRIDQAHPVGVTSVSWAPAMAPGA  165 (302)
Q Consensus        86 ~~~~~~~~~~~~~~~h~~~i~~l~~~pd~~~~~l~sg~~d~~v~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~  165 (302)
                      ++...   ....+..|...|.+++|+|+  +.+|++|+.|+.|++||+.+..  ....+. +|...|.+++|+|++    
T Consensus       151 ~~~~~---~~~~~~~~~~~v~~~~~spd--g~~lasg~~dg~i~iwd~~~~~--~~~~~~-~h~~~v~~l~~spd~----  218 (321)
T 3ow8_A          151 VESGK---KEYSLDTRGKFILSIAYSPD--GKYLASGAIDGIINIFDIATGK--LLHTLE-GHAMPIRSLTFSPDS----  218 (321)
T ss_dssp             TTTCS---EEEEEECSSSCEEEEEECTT--SSEEEEEETTSCEEEEETTTTE--EEEEEC-CCSSCCCEEEECTTS----
T ss_pred             cCCCc---eeEEecCCCceEEEEEECCC--CCEEEEEcCCCeEEEEECCCCc--EEEEEc-ccCCceeEEEEcCCC----
Confidence            97753   45567778899999999998  6799999999999999987542  223343 788999999999864    


Q ss_pred             eeecccCCCceeEEEeeCCCcEEEEEEecCccccccccccccCCCceeEEEeeCCCCCCccEEEEEecCCeEEEEEeccC
Q 022111          166 LVGLGLLDPVQKLASCGCDNTVKVWKMYNGIWKMDCFPALQMHSDWVRSVAWAPNLGLPKSTIASASQDGTVVIWTCAKE  245 (302)
Q Consensus       166 ~~~~~~~~~~~~l~s~~~D~~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~l~s~s~D~~i~iwd~~~~  245 (302)
                                .+|++|+.|++|+|||++++    .+...+.+|...|.+++|+|++    .+|++++.|++|+|||++..
T Consensus       219 ----------~~l~s~s~dg~i~iwd~~~~----~~~~~~~~h~~~v~~~~~sp~~----~~l~s~s~D~~v~iwd~~~~  280 (321)
T 3ow8_A          219 ----------QLLVTASDDGYIKIYDVQHA----NLAGTLSGHASWVLNVAFCPDD----THFVSSSSDKSVKVWDVGTR  280 (321)
T ss_dssp             ----------CEEEEECTTSCEEEEETTTC----CEEEEECCCSSCEEEEEECTTS----SEEEEEETTSCEEEEETTTT
T ss_pred             ----------CEEEEEcCCCeEEEEECCCc----ceeEEEcCCCCceEEEEECCCC----CEEEEEeCCCcEEEEeCCCC
Confidence                      78999999999999999865    3456778999999999999985    78999999999999999754


Q ss_pred             CcceeeeeeccCCCcEEEEEEccCCCEEEEecCC-ceEEeeec
Q 022111          246 GEQWEGRVLKDFKTPVWSVSWSLTGNLLAVADAN-NVTLWKEA  287 (302)
Q Consensus       246 ~~~~~~~~~~~~~~~v~~~~~spdg~~la~~~~d-~i~~w~~~  287 (302)
                      .   ....+.+|...|++++|+|+|++|++++.| .|++||..
T Consensus       281 ~---~~~~~~~h~~~v~~v~~s~~g~~l~s~~~d~~i~vwd~p  320 (321)
T 3ow8_A          281 T---CVHTFFDHQDQVWGVKYNGNGSKIVSVGDDQEIHIYDCP  320 (321)
T ss_dssp             E---EEEEECCCSSCEEEEEECTTSSEEEEEETTCCEEEEECC
T ss_pred             E---EEEEEcCCCCcEEEEEECCCCCEEEEEeCCCeEEEEeCC
Confidence            2   123346788899999999999999999998 79999963

>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*

Probab=100.00  E-value=1.1e-39  Score=285.48  Aligned_cols=254  Identities=19%  Similarity=0.301  Sum_probs=209.6

Q ss_pred             CcccccccccceeEEEEccCCCEEEEeeCCCcEEEEeecCCCceEEEEecCcccCeEEEEeeCCCCCCEEEEEeCCCeEE
Q 022111            3 AQKIETGHEDTVHDVAMDFYGKRLATASSDSSIKIIGLSNSASQHLATLKGHRGPVWQVAWAHPKFGSILASCSYDGQVI   82 (302)
Q Consensus         3 ~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~s~D~~i~   82 (302)
                      .++++.+|.+.|++++|+|++++|++|+.|++|++||....  ..+..+..|...|.+++|+++  +++|++|+.|+.++
T Consensus        47 ~~~~l~gH~~~v~~~~~s~d~~~l~s~s~Dg~v~iWd~~~~--~~~~~~~~~~~~v~~~~~s~~--~~~l~s~~~d~~v~  122 (340)
T 1got_B           47 TRRTLRGHLAKIYAMHWGTDSRLLLSASQDGKLIIWDSYTT--NKVHAIPLRSSWVMTCAYAPS--GNYVACGGLDNICS  122 (340)
T ss_dssp             EEEEECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTC--CEEEEEECSSSCEEEEEECTT--SSEEEEEETTCEEE
T ss_pred             hheeecCCCCceEEEEECCCCCEEEEEeCCCcEEEEECCCC--CcceEeecCCccEEEEEECCC--CCEEEEEeCCCeEE
Confidence            34567799999999999999999999999999999998653  456778889999999999864  89999999999999


Q ss_pred             EEEcCCCC-ceeEEEEecCCCCCeeEEEecCCCCCcEEEEEecCCcEEEEEecCCCCeeeeeecccCCCCeEEEEeCCCC
Q 022111           83 IWKEGNQN-DWTQAHTFNDHKSSVNSIAWAPHELGLSLACGSSDGNISVFTATADGGWDTTRIDQAHPVGVTSVSWAPAM  161 (302)
Q Consensus        83 iwd~~~~~-~~~~~~~~~~h~~~i~~l~~~pd~~~~~l~sg~~d~~v~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~  161 (302)
                      +|++.... .......+.+|.+.|.++.|+|+  + .+++++.|++|++||+.+..  ....+. +|...|.+++|+|++
T Consensus       123 iw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~--~-~l~s~s~d~~i~~wd~~~~~--~~~~~~-~h~~~v~~~~~~~~~  196 (340)
T 1got_B          123 IYNLKTREGNVRVSRELAGHTGYLSCCRFLDD--N-QIVTSSGDTTCALWDIETGQ--QTTTFT-GHTGDVMSLSLAPDT  196 (340)
T ss_dssp             EEETTTCSBSCEEEEEEECCSSCEEEEEEEET--T-EEEEEETTSCEEEEETTTTE--EEEEEC-CCSSCEEEEEECTTS
T ss_pred             EEECccCCCcceeEEEecCCCccEEEEEECCC--C-cEEEEECCCcEEEEECCCCc--EEEEEc-CCCCceEEEEECCCC
Confidence            99986542 12345677889999999999986  3 59999999999999987542  223343 789999999999863


Q ss_pred             CCCceeecccCCCceeEEEeeCCCcEEEEEEecCccccccccccccCCCceeEEEeeCCCCCCccEEEEEecCCeEEEEE
Q 022111          162 APGALVGLGLLDPVQKLASCGCDNTVKVWKMYNGIWKMDCFPALQMHSDWVRSVAWAPNLGLPKSTIASASQDGTVVIWT  241 (302)
Q Consensus       162 ~~~~~~~~~~~~~~~~l~s~~~D~~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~l~s~s~D~~i~iwd  241 (302)
                                    .+|++|+.|++|++||++++    .+...+.+|...|++++|+|++    +.|++|+.|++|++||
T Consensus       197 --------------~~l~sg~~d~~v~~wd~~~~----~~~~~~~~h~~~v~~v~~~p~~----~~l~s~s~d~~v~iwd  254 (340)
T 1got_B          197 --------------RLFVSGACDASAKLWDVREG----MCRQTFTGHESDINAICFFPNG----NAFATGSDDATCRLFD  254 (340)
T ss_dssp             --------------SEEEEEETTSCEEEEETTTC----SEEEEECCCSSCEEEEEECTTS----SEEEEEETTSCEEEEE
T ss_pred             --------------CEEEEEeCCCcEEEEECCCC----eeEEEEcCCcCCEEEEEEcCCC----CEEEEEcCCCcEEEEE
Confidence                          78999999999999999876    3456788999999999999985    7899999999999999


Q ss_pred             eccCCcceeeee-eccCCCcEEEEEEccCCCEEEEecCC-ceEEeeecCCc
Q 022111          242 CAKEGEQWEGRV-LKDFKTPVWSVSWSLTGNLLAVADAN-NVTLWKEAVDG  290 (302)
Q Consensus       242 ~~~~~~~~~~~~-~~~~~~~v~~~~~spdg~~la~~~~d-~i~~w~~~~~~  290 (302)
                      ++.....  ... ...+...|.+++|+|+|++|++|+.| .|++|+.....
T Consensus       255 ~~~~~~~--~~~~~~~~~~~v~~~~~s~~g~~l~~g~~d~~i~vwd~~~~~  303 (340)
T 1got_B          255 LRADQEL--MTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKAD  303 (340)
T ss_dssp             TTTTEEE--EEECCTTCCSCEEEEEECTTSSEEEEEETTSEEEEEETTTCC
T ss_pred             CCCCcEE--EEEccCCcccceEEEEECCCCCEEEEECCCCeEEEEEcccCc
Confidence            9764211  111 12233579999999999999999998 79999975433

>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1

Probab=100.00  E-value=3e-40  Score=296.47  Aligned_cols=259  Identities=25%  Similarity=0.409  Sum_probs=213.2

Q ss_pred             ccccccccceeEEEEccCCCEEEEeeCCCcEEEEeecCCCceEEEEecCcccCeEEEEeeCCCCCCEEEEEeCCCeEEEE
Q 022111            5 KIETGHEDTVHDVAMDFYGKRLATASSDSSIKIIGLSNSASQHLATLKGHRGPVWQVAWAHPKFGSILASCSYDGQVIIW   84 (302)
Q Consensus         5 ~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~s~D~~i~iw   84 (302)
                      +++.+|.+.|++++|++++++|++|+.|++|++||+..  .+.+..+.+|...|.+++|+++  +++|++|+.|++|++|
T Consensus       144 ~~l~~h~~~V~~v~~~~~~~~l~sgs~D~~i~iwd~~~--~~~~~~~~~h~~~V~~v~~~p~--~~~l~s~s~D~~i~~w  219 (410)
T 1vyh_C          144 RTLKGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQG--FECIRTMHGHDHNVSSVSIMPN--GDHIVSASRDKTIKMW  219 (410)
T ss_dssp             EEECCCSSCEEEEEECTTSSEEEEEETTSCCCEEETTS--SCEEECCCCCSSCEEEEEECSS--SSEEEEEETTSEEEEE
T ss_pred             EEEeccCCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCC--CceeEEEcCCCCCEEEEEEeCC--CCEEEEEeCCCeEEEE
Confidence            45678999999999999999999999999999999865  4567788999999999999864  7899999999999999


Q ss_pred             EcCCCCceeEEEEecCCCCCeeEEEecCCCCCcEEEEEecCCcEEEEEecCCCCeeeeeecccCCCCeEEEEeCCCCCCC
Q 022111           85 KEGNQNDWTQAHTFNDHKSSVNSIAWAPHELGLSLACGSSDGNISVFTATADGGWDTTRIDQAHPVGVTSVSWAPAMAPG  164 (302)
Q Consensus        85 d~~~~~~~~~~~~~~~h~~~i~~l~~~pd~~~~~l~sg~~d~~v~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~  164 (302)
                      |++++   .++.++.+|...|.++.|+|+  +.++++|+.|+.|++||+.....  ...+ ..|...|.++.|+|+....
T Consensus       220 d~~~~---~~~~~~~~h~~~v~~~~~~~~--g~~l~s~s~D~~v~vwd~~~~~~--~~~~-~~h~~~v~~~~~~~~~~~~  291 (410)
T 1vyh_C          220 EVQTG---YCVKTFTGHREWVRMVRPNQD--GTLIASCSNDQTVRVWVVATKEC--KAEL-REHRHVVECISWAPESSYS  291 (410)
T ss_dssp             ETTTC---CEEEEEECCSSCEEEEEECTT--SSEEEEEETTSCEEEEETTTCCE--EEEE-CCCSSCEEEEEECCSCGGG
T ss_pred             ECCCC---cEEEEEeCCCccEEEEEECCC--CCEEEEEcCCCeEEEEECCCCce--eeEe-cCCCceEEEEEEcCccccc
Confidence            99776   367788899999999999998  67999999999999999875432  2333 3788899999999864211


Q ss_pred             cee------ecccCCCceeEEEeeCCCcEEEEEEecCccccccccccccCCCceeEEEeeCCCCCCccEEEEEecCCeEE
Q 022111          165 ALV------GLGLLDPVQKLASCGCDNTVKVWKMYNGIWKMDCFPALQMHSDWVRSVAWAPNLGLPKSTIASASQDGTVV  238 (302)
Q Consensus       165 ~~~------~~~~~~~~~~l~s~~~D~~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~l~s~s~D~~i~  238 (302)
                      ...      ......++.+|++|+.|++|++||++++    .++..+.+|.++|++++|+|++    .+|++|+.|++|+
T Consensus       292 ~~~~~~~~~~~~~~~~g~~l~sgs~D~~i~iwd~~~~----~~~~~~~~h~~~v~~v~~~~~g----~~l~s~s~D~~i~  363 (410)
T 1vyh_C          292 SISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTG----MCLMTLVGHDNWVRGVLFHSGG----KFILSCADDKTLR  363 (410)
T ss_dssp             GGGGCCSCC-------CCEEEEEETTSEEEEEETTTT----EEEEEEECCSSCEEEEEECSSS----SCEEEEETTTEEE
T ss_pred             chhhhccccccccCCCCCEEEEEeCCCeEEEEECCCC----ceEEEEECCCCcEEEEEEcCCC----CEEEEEeCCCeEE
Confidence            100      0001123578999999999999999876    4566788999999999999985    7799999999999


Q ss_pred             EEEeccCCcceeeeeeccCCCcEEEEEEccCCCEEEEecCC-ceEEeee
Q 022111          239 IWTCAKEGEQWEGRVLKDFKTPVWSVSWSLTGNLLAVADAN-NVTLWKE  286 (302)
Q Consensus       239 iwd~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~la~~~~d-~i~~w~~  286 (302)
                      +||++....   ...+..|...|++++|+|++.+|++|+.| .|++|+.
T Consensus       364 vwd~~~~~~---~~~~~~h~~~v~~l~~~~~~~~l~sgs~D~~i~vW~~  409 (410)
T 1vyh_C          364 VWDYKNKRC---MKTLNAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWEC  409 (410)
T ss_dssp             EECCTTSCC---CEEEECCSSCEEEEEECSSSSCEEEEETTSEEEEEC-
T ss_pred             EEECCCCce---EEEEcCCCCcEEEEEEcCCCCEEEEEeCCCcEEEEeC
Confidence            999975421   23446788899999999999999999999 7999974

>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}

Probab=100.00  E-value=2.6e-40  Score=291.62  Aligned_cols=255  Identities=20%  Similarity=0.185  Sum_probs=198.9

Q ss_pred             cccccceeEEEEccCCCEEEEeeCCCcEEEEeecCCCceE--EEEecCcccCeEEEEeeCCCCCCEEEEEeCCCeEEEEE
Q 022111            8 TGHEDTVHDVAMDFYGKRLATASSDSSIKIIGLSNSASQH--LATLKGHRGPVWQVAWAHPKFGSILASCSYDGQVIIWK   85 (302)
Q Consensus         8 ~~h~~~v~~~~~s~~~~~l~s~~~d~~v~lw~~~~~~~~~--~~~~~~h~~~v~~v~~~~~~~~~~l~s~s~D~~i~iwd   85 (302)
                      .+|...|++++|+|+++ +++++.|++|+|||+..+....  .....+|.+.|++++|+++  +++|++|+.|++|++||
T Consensus        91 ~~~~~~V~~~~~s~d~~-~l~~s~dg~v~lWd~~~~~~~~~~~~~~~~h~~~V~~v~~spd--g~~l~sgs~dg~v~iwd  167 (357)
T 4g56_B           91 VQTEAGVTDVAWVSEKG-ILVASDSGAVELWEILEKESLLVNKFAKYEHDDIVKTLSVFSD--GTQAVSGGKDFSVKVWD  167 (357)
T ss_dssp             EECSSCEEEEEEETTTE-EEEEETTSCEEEC--------CCCCEEECCCSSCEEEEEECSS--SSEEEEEETTSCEEEEE
T ss_pred             CCCCCCEEEEEEcCCCC-EEEEECCCEEEEeeccccceeEEEeeccCCCCCCEEEEEECCC--CCEEEEEeCCCeEEEEE
Confidence            36889999999999985 5567889999999986543221  2345689999999999864  89999999999999999


Q ss_pred             cCCCCceeEEEEecCCCCCeeEEEecCCCCCcEEEEEecCCcEEEEEecCCCCeeeeeecccCCCCeEEEEeCCCCCCCc
Q 022111           86 EGNQNDWTQAHTFNDHKSSVNSIAWAPHELGLSLACGSSDGNISVFTATADGGWDTTRIDQAHPVGVTSVSWAPAMAPGA  165 (302)
Q Consensus        86 ~~~~~~~~~~~~~~~h~~~i~~l~~~pd~~~~~l~sg~~d~~v~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~  165 (302)
                      ++++   .....+.+|...|++++|+|+. ..++++++.|+.|++||++.......... ..|...+.+++|+|+.    
T Consensus       168 ~~~~---~~~~~~~~h~~~v~~v~~s~~~-~~~~~s~~~dg~v~~wd~~~~~~~~~~~~-~~~~~~v~~v~~sp~~----  238 (357)
T 4g56_B          168 LSQK---AVLKSYNAHSSEVNCVAACPGK-DTIFLSCGEDGRILLWDTRKPKPATRIDF-CASDTIPTSVTWHPEK----  238 (357)
T ss_dssp             TTTT---EEEEEECCCSSCEEEEEECTTC-SSCEEEEETTSCEEECCTTSSSCBCBCCC-TTCCSCEEEEEECTTS----
T ss_pred             CCCC---cEEEEEcCCCCCEEEEEEccCC-CceeeeeccCCceEEEECCCCceeeeeee-ccccccccchhhhhcc----
Confidence            9775   4677888999999999999984 24789999999999999876543322222 2466779999999864    


Q ss_pred             eeecccCCCceeEEEeeCCCcEEEEEEecCccccccccccccCCCceeEEEeeCCCCCCccEEEEEecCCeEEEEEeccC
Q 022111          166 LVGLGLLDPVQKLASCGCDNTVKVWKMYNGIWKMDCFPALQMHSDWVRSVAWAPNLGLPKSTIASASQDGTVVIWTCAKE  245 (302)
Q Consensus       166 ~~~~~~~~~~~~l~s~~~D~~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~l~s~s~D~~i~iwd~~~~  245 (302)
                               +.+|++|+.|+.|++||++++    .++..+.+|...|++++|+|++   +.+||+|+.|++|+|||++..
T Consensus       239 ---------~~~la~g~~d~~i~~wd~~~~----~~~~~~~~~~~~v~~l~~sp~~---~~~lasgs~D~~i~iwd~~~~  302 (357)
T 4g56_B          239 ---------DDTFACGDETGNVSLVNIKNP----DSAQTSAVHSQNITGLAYSYHS---SPFLASISEDCTVAVLDADFS  302 (357)
T ss_dssp             ---------TTEEEEEESSSCEEEEESSCG----GGCEEECCCSSCEEEEEECSSS---SCCEEEEETTSCEEEECTTSC
T ss_pred             ---------cceEEEeecccceeEEECCCC----cEeEEEeccceeEEEEEEcCCC---CCEEEEEeCCCEEEEEECCCC
Confidence                     468999999999999999876    4566788999999999999986   367999999999999998753


Q ss_pred             CcceeeeeeccCCCcEEEEEEcc-CCCEEEEecCC-ceEEeeecCCceEEE
Q 022111          246 GEQWEGRVLKDFKTPVWSVSWSL-TGNLLAVADAN-NVTLWKEAVDGEWQQ  294 (302)
Q Consensus       246 ~~~~~~~~~~~~~~~v~~~~~sp-dg~~la~~~~d-~i~~w~~~~~~~~~~  294 (302)
                      .    .....+|...|++|+||| |+++|++++.| .|++|+...+++-+.
T Consensus       303 ~----~~~~~~H~~~V~~vafsP~d~~~l~s~s~Dg~v~iW~~~~~~~~~~  349 (357)
T 4g56_B          303 E----VFRDLSHRDFVTGVAWSPLDHSKFTTVGWDHKVLHHHLPSEGRTEN  349 (357)
T ss_dssp             E----EEEECCCSSCEEEEEECSSSTTEEEEEETTSCEEEEECC-------
T ss_pred             c----EeEECCCCCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCCCcccc
Confidence            2    112247888999999999 89999999988 799999876665443

>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A

Probab=100.00  E-value=1.3e-39  Score=280.67  Aligned_cols=251  Identities=21%  Similarity=0.287  Sum_probs=208.3

Q ss_pred             cccccccceeEEEEccCCCEEEEeeCCCcEEEEeecCCCceEEEEecCcccCeEEEEeeCCCCCCEEEEEeCCCeEEEEE
Q 022111            6 IETGHEDTVHDVAMDFYGKRLATASSDSSIKIIGLSNSASQHLATLKGHRGPVWQVAWAHPKFGSILASCSYDGQVIIWK   85 (302)
Q Consensus         6 ~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~s~D~~i~iwd   85 (302)
                      .+.+|..+|.+++|++++++|++|+.|++|++||+..  .+.+..+.+|.+.|++++|+|+  +++|++|+.|++|++||
T Consensus        50 ~~~~~~~~v~~~~~~~~~~~l~s~s~d~~i~vwd~~~--~~~~~~~~~h~~~v~~~~~~~~--~~~l~sgs~D~~v~lWd  125 (304)
T 2ynn_A           50 SIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFNYNT--GEKVVDFEAHPDYIRSIAVHPT--KPYVLSGSDDLTVKLWN  125 (304)
T ss_dssp             EEECCSSCEEEEEEEGGGTEEEEEETTSEEEEEETTT--CCEEEEEECCSSCEEEEEECSS--SSEEEEEETTSCEEEEE
T ss_pred             EeeccCCcEEEEEEeCCCCEEEEECCCCEEEEEECCC--CcEEEEEeCCCCcEEEEEEcCC--CCEEEEECCCCeEEEEE
Confidence            3557999999999999999999999999999999865  3467788999999999999864  78999999999999999


Q ss_pred             cCCCCceeEEEEecCCCCCeeEEEecCCCCCcEEEEEecCCcEEEEEecCCCCeeeeeecccCCCCeEEEEeCCCCCCCc
Q 022111           86 EGNQNDWTQAHTFNDHKSSVNSIAWAPHELGLSLACGSSDGNISVFTATADGGWDTTRIDQAHPVGVTSVSWAPAMAPGA  165 (302)
Q Consensus        86 ~~~~~~~~~~~~~~~h~~~i~~l~~~pd~~~~~l~sg~~d~~v~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~  165 (302)
                      +++..  .....+.+|...|.+++|+|+. +..|++|+.|++|++||+......  ..+...|...+..+.|+|..    
T Consensus       126 ~~~~~--~~~~~~~~h~~~v~~v~~~p~~-~~~l~sgs~D~~v~iwd~~~~~~~--~~~~~~~~~~v~~~~~~~~~----  196 (304)
T 2ynn_A          126 WENNW--ALEQTFEGHEHFVMCVAFNPKD-PSTFASGCLDRTVKVWSLGQSTPN--FTLTTGQERGVNYVDYYPLP----  196 (304)
T ss_dssp             GGGTT--EEEEEECCCCSCEEEEEECTTC-TTEEEEEETTSEEEEEETTCSSCS--EEEECCCTTCEEEEEECCST----
T ss_pred             CCCCc--chhhhhcccCCcEEEEEECCCC-CCEEEEEeCCCeEEEEECCCCCcc--ceeccCCcCcEEEEEEEEcC----
Confidence            97653  3556788999999999999953 568999999999999998754322  22333566788899998743    


Q ss_pred             eeecccCCCceeEEEeeCCCcEEEEEEecCccccccccccccCCCceeEEEeeCCCCCCccEEEEEecCCeEEEEEeccC
Q 022111          166 LVGLGLLDPVQKLASCGCDNTVKVWKMYNGIWKMDCFPALQMHSDWVRSVAWAPNLGLPKSTIASASQDGTVVIWTCAKE  245 (302)
Q Consensus       166 ~~~~~~~~~~~~l~s~~~D~~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~l~s~s~D~~i~iwd~~~~  245 (302)
                              ++.+|++|+.|++|++||++++    .++..+.+|...|.+++|+|++    ..|++|+.|++|++||+++.
T Consensus       197 --------~~~~l~s~s~D~~i~iWd~~~~----~~~~~~~~h~~~v~~~~~~p~~----~~l~s~s~Dg~i~iWd~~~~  260 (304)
T 2ynn_A          197 --------DKPYMITASDDLTIKIWDYQTK----SCVATLEGHMSNVSFAVFHPTL----PIIISGSEDGTLKIWNSSTY  260 (304)
T ss_dssp             --------TCCEEEEEETTSEEEEEETTTT----EEEEEEECCSSCEEEEEECSSS----SEEEEEETTSCEEEEETTTC
T ss_pred             --------CCCEEEEEcCCCeEEEEeCCCC----ccceeeCCCCCCEEEEEECCCC----CEEEEEcCCCeEEEEECCCC
Confidence                    2478999999999999999876    4567789999999999999985    78999999999999998754


Q ss_pred             CcceeeeeeccCCCcEEEEEEccCCC--EEEEecCCceEEeeecC
Q 022111          246 GEQWEGRVLKDFKTPVWSVSWSLTGN--LLAVADANNVTLWKEAV  288 (302)
Q Consensus       246 ~~~~~~~~~~~~~~~v~~~~~spdg~--~la~~~~d~i~~w~~~~  288 (302)
                      ..   ...+..+...+++++|+|+|.  +||+|+++++.+|+...
T Consensus       261 ~~---~~~~~~~~~~~~~~~~~~~~~~~~~asg~~~g~~~~~~~~  302 (304)
T 2ynn_A          261 KV---EKTLNVGLERSWCIATHPTGRKNYIASGFDNGFTVLSLGN  302 (304)
T ss_dssp             CE---EEEECCSSSSEEEEEECTTCGGGCEEEEETTEEEEEECC-
T ss_pred             ce---eeeccCCCccEEEEEECCCCCceEEEEecCCceEEEEecc
Confidence            21   233456677899999999874  68899888999998753

>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}

Probab=100.00  E-value=1.5e-39  Score=286.38  Aligned_cols=249  Identities=16%  Similarity=0.243  Sum_probs=203.1

Q ss_pred             cccccccccceeEEEEccCCCEEEEeeCCCcEEEEeecCCCc--------------------------------------
Q 022111            4 QKIETGHEDTVHDVAMDFYGKRLATASSDSSIKIIGLSNSAS--------------------------------------   45 (302)
Q Consensus         4 ~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~lw~~~~~~~--------------------------------------   45 (302)
                      ...+.+|.+.|++++|+|++++||||+.|++|++||......                                      
T Consensus        57 ~~~l~gH~~~V~~~~~s~d~~~l~s~s~Dg~v~vWd~~~~~~~~~~~~~~~~v~~~~~sp~g~~lasg~~d~~i~v~~~~  136 (354)
T 2pbi_B           57 RRTLKGHGNKVLCMDWCKDKRRIVSSSQDGKVIVWDSFTTNKEHAVTMPCTWVMACAYAPSGCAIACGGLDNKCSVYPLT  136 (354)
T ss_dssp             EEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSSSCCCEEEECTTSSEEEEESTTSEEEEEECC
T ss_pred             EEEecCCCCeEEEEEECCCCCEEEEEeCCCeEEEEECCCCCcceEEecCCCCEEEEEECCCCCEEEEeeCCCCEEEEEEe
Confidence            345679999999999999999999999999999999643211                                      


Q ss_pred             --------eEEEEecCcccCeEEEEeeCCCCCCEEEEEeCCCeEEEEEcCCCCceeEEEEecCCCCCeeEEEecCCCCCc
Q 022111           46 --------QHLATLKGHRGPVWQVAWAHPKFGSILASCSYDGQVIIWKEGNQNDWTQAHTFNDHKSSVNSIAWAPHELGL  117 (302)
Q Consensus        46 --------~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~h~~~i~~l~~~pd~~~~  117 (302)
                              .....+.+|...|.+++|+++  +..|++++.|++|++||++++   ..+.++.+|...|.+++|+|+..+.
T Consensus       137 ~~~~~~~~~~~~~~~~h~~~v~~~~~~~~--~~~l~t~s~D~~v~lwd~~~~---~~~~~~~~h~~~v~~~~~~~~~~g~  211 (354)
T 2pbi_B          137 FDKNENMAAKKKSVAMHTNYLSACSFTNS--DMQILTASGDGTCALWDVESG---QLLQSFHGHGADVLCLDLAPSETGN  211 (354)
T ss_dssp             CCTTCCSGGGCEEEEECSSCEEEEEECSS--SSEEEEEETTSEEEEEETTTC---CEEEEEECCSSCEEEEEECCCSSCC
T ss_pred             ccccccccccceeeeccCCcEEEEEEeCC--CCEEEEEeCCCcEEEEeCCCC---eEEEEEcCCCCCeEEEEEEeCCCCC
Confidence                    012334568888999999764  789999999999999999775   3677888999999999999875577


Q ss_pred             EEEEEecCCcEEEEEecCCCCeeeeeecccCCCCeEEEEeCCCCCCCceeecccCCCceeEEEeeCCCcEEEEEEecCcc
Q 022111          118 SLACGSSDGNISVFTATADGGWDTTRIDQAHPVGVTSVSWAPAMAPGALVGLGLLDPVQKLASCGCDNTVKVWKMYNGIW  197 (302)
Q Consensus       118 ~l~sg~~d~~v~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~D~~v~iwd~~~~~~  197 (302)
                      .|++|+.|++|++||+++...  ...+ ..|...|.+++|+|++              ..|++|+.|++|++||++... 
T Consensus       212 ~l~sgs~Dg~v~~wd~~~~~~--~~~~-~~h~~~v~~v~~~p~~--------------~~l~s~s~D~~v~lwd~~~~~-  273 (354)
T 2pbi_B          212 TFVSGGCDKKAMVWDMRSGQC--VQAF-ETHESDVNSVRYYPSG--------------DAFASGSDDATCRLYDLRADR-  273 (354)
T ss_dssp             EEEEEETTSCEEEEETTTCCE--EEEE-CCCSSCEEEEEECTTS--------------SEEEEEETTSCEEEEETTTTE-
T ss_pred             EEEEEeCCCeEEEEECCCCcE--EEEe-cCCCCCeEEEEEeCCC--------------CEEEEEeCCCeEEEEECCCCc-
Confidence            999999999999999876432  2233 3789999999999864              789999999999999997652 


Q ss_pred             cccccccc--ccCCCceeEEEeeCCCCCCccEEEEEecCCeEEEEEeccCCcceeeeeeccCCCcEEEEEEccCCCEEEE
Q 022111          198 KMDCFPAL--QMHSDWVRSVAWAPNLGLPKSTIASASQDGTVVIWTCAKEGEQWEGRVLKDFKTPVWSVSWSLTGNLLAV  275 (302)
Q Consensus       198 ~~~~~~~~--~~h~~~v~~v~~~p~~~~~~~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~la~  275 (302)
                         ....+  ..+...+.+++|+|++    .+|++|+.|++|++||+.....   ...+.+|..+|.+++|+|||++|++
T Consensus       274 ---~~~~~~~~~~~~~~~~~~~s~~g----~~l~~g~~d~~i~vwd~~~~~~---~~~l~~h~~~v~~l~~spdg~~l~s  343 (354)
T 2pbi_B          274 ---EVAIYSKESIIFGASSVDFSLSG----RLLFAGYNDYTINVWDVLKGSR---VSILFGHENRVSTLRVSPDGTAFCS  343 (354)
T ss_dssp             ---EEEEECCTTCCSCEEEEEECTTS----SEEEEEETTSCEEEEETTTCSE---EEEECCCSSCEEEEEECTTSSCEEE
T ss_pred             ---EEEEEcCCCcccceeEEEEeCCC----CEEEEEECCCcEEEEECCCCce---EEEEECCCCcEEEEEECCCCCEEEE
Confidence               11222  2344578999999985    7899999999999999875431   2345678899999999999999999


Q ss_pred             ecCC-ceEEee
Q 022111          276 ADAN-NVTLWK  285 (302)
Q Consensus       276 ~~~d-~i~~w~  285 (302)
                      |+.| .|++|+
T Consensus       344 gs~D~~v~vW~  354 (354)
T 2pbi_B          344 GSWDHTLRVWA  354 (354)
T ss_dssp             EETTSEEEEEC
T ss_pred             EcCCCCEEecC
Confidence            9999 799995

>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R

Probab=100.00  E-value=4.1e-39  Score=282.13  Aligned_cols=260  Identities=20%  Similarity=0.286  Sum_probs=205.6

Q ss_pred             ccccccccceeEEEE-----cc-CCCEEEEeeCCCcEEEEeecCCC-----ceEEEEecCcccCeEEEEeeCCCCCCEEE
Q 022111            5 KIETGHEDTVHDVAM-----DF-YGKRLATASSDSSIKIIGLSNSA-----SQHLATLKGHRGPVWQVAWAHPKFGSILA   73 (302)
Q Consensus         5 ~~~~~h~~~v~~~~~-----s~-~~~~l~s~~~d~~v~lw~~~~~~-----~~~~~~~~~h~~~v~~v~~~~~~~~~~l~   73 (302)
                      .++.+|++.|++++|     ++ ++++|+||+.|++|++|++....     ..+...+.+|...|.+++|+++  +.+|+
T Consensus        15 ~~l~gH~~~V~~~~~~~s~~~~~d~~~l~sgs~D~~v~iWd~~~~~~~~~~~~~~~~l~~h~~~V~~~~~~~~--~~~l~   92 (343)
T 2xzm_R           15 GILEGHSDWVTSIVAGFSQKENEDSPVLISGSRDKTVMIWKLYEEEQNGYFGIPHKALTGHNHFVSDLALSQE--NCFAI   92 (343)
T ss_dssp             EEEECCSSCEEEEEECCCSSTTCCCCEEEEEETTSCEEEEEECSSCCSSBSEEEEEEECCCSSCEEEEEECSS--TTEEE
T ss_pred             eeeccchhhhhheeeEEEeecCCCCCEEEEEcCCCEEEEEECCcCCcccccccccchhccCCCceEEEEECCC--CCEEE
Confidence            457799999999999     66 89999999999999999986432     3456778999999999999864  78999


Q ss_pred             EEeCCCeEEEEEcCCCCceeEEEEecCCCCCeeEEEecCCCCCcEEEEEecCCcEEEEEecCCCCeeeeeecccCCCCeE
Q 022111           74 SCSYDGQVIIWKEGNQNDWTQAHTFNDHKSSVNSIAWAPHELGLSLACGSSDGNISVFTATADGGWDTTRIDQAHPVGVT  153 (302)
Q Consensus        74 s~s~D~~i~iwd~~~~~~~~~~~~~~~h~~~i~~l~~~pd~~~~~l~sg~~d~~v~~~~~~~~~~~~~~~~~~~h~~~v~  153 (302)
                      +|+.|++|++||++++.   ....+.+|...|.+++|+|+  +.+|++|+.|++|++||+... ..........|...+.
T Consensus        93 s~s~D~~v~lwd~~~~~---~~~~~~~h~~~v~~v~~sp~--~~~l~s~~~d~~i~~wd~~~~-~~~~~~~~~~~~~~v~  166 (343)
T 2xzm_R           93 SSSWDKTLRLWDLRTGT---TYKRFVGHQSEVYSVAFSPD--NRQILSAGAEREIKLWNILGE-CKFSSAEKENHSDWVS  166 (343)
T ss_dssp             EEETTSEEEEEETTSSC---EEEEEECCCSCEEEEEECSS--TTEEEEEETTSCEEEEESSSC-EEEECCTTTSCSSCEE
T ss_pred             EEcCCCcEEEEECCCCc---EEEEEcCCCCcEEEEEECCC--CCEEEEEcCCCEEEEEeccCC-ceeeeecccCCCceee
Confidence            99999999999997753   56778899999999999998  669999999999999998632 1111111226788899


Q ss_pred             EEEeCCCCCCCceeecccCCCceeEEEeeCCCcEEEEEEecCccccccccccccCCCceeEEEeeCCCCCCccEEEEEec
Q 022111          154 SVSWAPAMAPGALVGLGLLDPVQKLASCGCDNTVKVWKMYNGIWKMDCFPALQMHSDWVRSVAWAPNLGLPKSTIASASQ  233 (302)
Q Consensus       154 ~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~D~~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~l~s~s~  233 (302)
                      ++.|+|......    ...+.+.+|++++.|++|++||.. .    .....+.+|...|.+++|+|++    ++|++|+.
T Consensus       167 ~~~~~~~~~~~~----~~~~~~~~l~s~~~d~~i~iwd~~-~----~~~~~~~~h~~~v~~~~~s~~g----~~l~sgs~  233 (343)
T 2xzm_R          167 CVRYSPIMKSAN----KVQPFAPYFASVGWDGRLKVWNTN-F----QIRYTFKAHESNVNHLSISPNG----KYIATGGK  233 (343)
T ss_dssp             EEEECCCCCSCS----CCCSSCCEEEEEETTSEEEEEETT-T----EEEEEEECCSSCEEEEEECTTS----SEEEEEET
T ss_pred             eeeecccccccc----ccCCCCCEEEEEcCCCEEEEEcCC-C----ceeEEEcCccccceEEEECCCC----CEEEEEcC
Confidence            999999652211    011224689999999999999943 2    3345678899999999999995    78999999


Q ss_pred             CCeEEEEEeccCCcceeeeeeccCCCcEEEEEEccCCCEEEEecCCceEEeeecC
Q 022111          234 DGTVVIWTCAKEGEQWEGRVLKDFKTPVWSVSWSLTGNLLAVADANNVTLWKEAV  288 (302)
Q Consensus       234 D~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~la~~~~d~i~~w~~~~  288 (302)
                      |+.|++||++......  .. ..+...|.+++|+|++.+|+++.+++|++|+...
T Consensus       234 dg~v~iwd~~~~~~~~--~~-~~~~~~v~~v~~sp~~~~la~~~d~~v~iw~~~~  285 (343)
T 2xzm_R          234 DKKLLIWDILNLTYPQ--RE-FDAGSTINQIAFNPKLQWVAVGTDQGVKIFNLMT  285 (343)
T ss_dssp             TCEEEEEESSCCSSCS--EE-EECSSCEEEEEECSSSCEEEEEESSCEEEEESSS
T ss_pred             CCeEEEEECCCCcccc--ee-ecCCCcEEEEEECCCCCEEEEECCCCEEEEEeCC
Confidence            9999999985432211  11 2245579999999999999888766999999753

>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}

Probab=100.00  E-value=1.2e-39  Score=289.63  Aligned_cols=260  Identities=21%  Similarity=0.284  Sum_probs=208.2

Q ss_pred             ccccccccceeEEEEccCCCEEEEeeCCCcEEEEeecCCCceEEEEecCcccCeEEEEeeCCCCCCEEEEEeCCCeEEEE
Q 022111            5 KIETGHEDTVHDVAMDFYGKRLATASSDSSIKIIGLSNSASQHLATLKGHRGPVWQVAWAHPKFGSILASCSYDGQVIIW   84 (302)
Q Consensus         5 ~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~s~D~~i~iw   84 (302)
                      +++.+|.+.|++++|+|++++|+||+.|++|+|||...  .+....+.+|...|.+++|+++  +++|++|+.|+.+++|
T Consensus        60 ~~l~gH~~~V~~~~~sp~~~~l~s~s~D~~v~iWd~~~--~~~~~~~~~h~~~v~~~~~s~~--g~~las~~~d~~v~iw  135 (380)
T 3iz6_a           60 RTLQGHSGKVYSLDWTPEKNWIVSASQDGRLIVWNALT--SQKTHAIKLHCPWVMECAFAPN--GQSVACGGLDSACSIF  135 (380)
T ss_dssp             EEECCCSSCEEEEEECTTSSCEEEEETTSEEEEEETTT--TEEEEEEECCCTTCCCCEECTT--SSEEEECCSSSCCEEE
T ss_pred             ecccccccEEEEEEEcCCCCEEEEEeCCCeEEEEECCC--CccceEEecCCCCEEEEEECCC--CCEEEEeeCCCcEEEE
Confidence            45779999999999999999999999999999999865  4566788899999999999864  8999999999999999


Q ss_pred             EcCCCC----ceeEEEEecCCCCCeeEEEecCCCCCcEEEEEecCCcEEEEEecCCCCeeee--eecccCCCCeEEEEeC
Q 022111           85 KEGNQN----DWTQAHTFNDHKSSVNSIAWAPHELGLSLACGSSDGNISVFTATADGGWDTT--RIDQAHPVGVTSVSWA  158 (302)
Q Consensus        85 d~~~~~----~~~~~~~~~~h~~~i~~l~~~pd~~~~~l~sg~~d~~v~~~~~~~~~~~~~~--~~~~~h~~~v~~~~~~  158 (302)
                      ++....    .......+.+|.+.|.++.|+|+. +..|++|+.|++|++||+.+.......  ....+|...|.++.|+
T Consensus       136 ~~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~-~~~l~s~s~D~~i~~wd~~~~~~~~~~~~~~~~~h~~~v~~~~~~  214 (380)
T 3iz6_a          136 NLSSQADRDGNMPVSRVLTGHKGYASSCQYVPDQ-ETRLITGSGDQTCVLWDVTTGQRISIFGSEFPSGHTADVLSLSIN  214 (380)
T ss_dssp             ECCCCSSCCCSSTTCCBCCCCSSCCCCCBCCSSS-SSCEEEECTTSCEEEECTTTCCEEEEECCCSSSSCCSCEEEEEEC
T ss_pred             ECCCCccccCCccceeeccCCCcceEEEEEecCC-CCEEEEECCCCcEEEEEcCCCcEEEEeecccCCCCccCeEEEEee
Confidence            986431    112334678899999999999974 457999999999999998765432221  1224688899999997


Q ss_pred             CCCCCCceeecccCCCceeEEEeeCCCcEEEEEEecCccccccccccccCCCceeEEEeeCCCCCCccEEEEEecCCeEE
Q 022111          159 PAMAPGALVGLGLLDPVQKLASCGCDNTVKVWKMYNGIWKMDCFPALQMHSDWVRSVAWAPNLGLPKSTIASASQDGTVV  238 (302)
Q Consensus       159 ~~~~~~~~~~~~~~~~~~~l~s~~~D~~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~l~s~s~D~~i~  238 (302)
                      |..             +.+|++|+.|++|++||++...   ..+..+.+|.+.|++++|+|++    .+|++|+.|++|+
T Consensus       215 ~~~-------------~~~l~sgs~D~~v~~wd~~~~~---~~~~~~~~h~~~v~~v~~~p~~----~~l~s~s~D~~i~  274 (380)
T 3iz6_a          215 SLN-------------ANMFISGSCDTTVRLWDLRITS---RAVRTYHGHEGDINSVKFFPDG----QRFGTGSDDGTCR  274 (380)
T ss_dssp             SSS-------------CCEEEEEETTSCEEEEETTTTC---CCCEEECCCSSCCCEEEECTTS----SEEEEECSSSCEE
T ss_pred             cCC-------------CCEEEEEECCCeEEEEECCCCC---cceEEECCcCCCeEEEEEecCC----CeEEEEcCCCeEE
Confidence            632             4789999999999999997432   3456778999999999999985    7899999999999


Q ss_pred             EEEeccCCcceeeeeecc-------CCCcEEEEEEccCCCEEEEecCC-ceEEeeecCCceE
Q 022111          239 IWTCAKEGEQWEGRVLKD-------FKTPVWSVSWSLTGNLLAVADAN-NVTLWKEAVDGEW  292 (302)
Q Consensus       239 iwd~~~~~~~~~~~~~~~-------~~~~v~~~~~spdg~~la~~~~d-~i~~w~~~~~~~~  292 (302)
                      +||++.....   .....       ....|.+++|+|+|++|++|+.| .|++||.......
T Consensus       275 lwd~~~~~~~---~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~~~  333 (380)
T 3iz6_a          275 LFDMRTGHQL---QVYNREPDRNDNELPIVTSVAFSISGRLLFAGYSNGDCYVWDTLLAEMV  333 (380)
T ss_dssp             EEETTTTEEE---EEECCCCSSSCCSSCSCSEEEECSSSSEEEEECTTSCEEEEETTTCCEE
T ss_pred             EEECCCCcEE---EEecccccccccccCceEEEEECCCCCEEEEEECCCCEEEEECCCCceE
Confidence            9999864211   11111       12248899999999999999988 7999997554443

>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A

Probab=100.00  E-value=5.4e-38  Score=272.37  Aligned_cols=285  Identities=33%  Similarity=0.583  Sum_probs=222.5

Q ss_pred             cccccccccceeEEEEccCCCEEEEeeCCCcEEEEeecCCC--ceEEEEecCcccCeEEEEeeCCCCCCEEEEEeCCCeE
Q 022111            4 QKIETGHEDTVHDVAMDFYGKRLATASSDSSIKIIGLSNSA--SQHLATLKGHRGPVWQVAWAHPKFGSILASCSYDGQV   81 (302)
Q Consensus         4 ~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~lw~~~~~~--~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~s~D~~i   81 (302)
                      +.++.+|++.|++++|+|++++||+|+.|++|++|++....  .+....+.+|...|.+++|++..++++|++++.|++|
T Consensus         4 ~~~~~gH~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~d~~~l~s~~~dg~v   83 (351)
T 3f3f_A            4 QPFDSGHDDLVHDVVYDFYGRHVATCSSDQHIKVFKLDKDTSNWELSDSWRAHDSSIVAIDWASPEYGRIIASASYDKTV   83 (351)
T ss_dssp             CCEECCCSSCEEEEEECSSSSEEEEEETTSEEEEEEECSSSCCEEEEEEEECCSSCEEEEEECCGGGCSEEEEEETTSCE
T ss_pred             cccCcccccceeEEEEcCCCCEEEEeeCCCeEEEEECCCCCCcceecceeccCCCcEEEEEEcCCCCCCEEEEEcCCCeE
Confidence            45577999999999999999999999999999999997533  2456678899999999999863247899999999999


Q ss_pred             EEEEcCCCC------ceeEEEEecCCCCCeeEEEecCCCCCcEEEEEecCCcEEEEEecCCCCeeeee----------ec
Q 022111           82 IIWKEGNQN------DWTQAHTFNDHKSSVNSIAWAPHELGLSLACGSSDGNISVFTATADGGWDTTR----------ID  145 (302)
Q Consensus        82 ~iwd~~~~~------~~~~~~~~~~h~~~i~~l~~~pd~~~~~l~sg~~d~~v~~~~~~~~~~~~~~~----------~~  145 (302)
                      ++||++...      .+.....+..|...|.+++|+|+..+.++++++.|+.|++||++.........          ..
T Consensus        84 ~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~  163 (351)
T 3f3f_A           84 KLWEEDPDQEECSGRRWNKLCTLNDSKGSLYSVKFAPAHLGLKLACLGNDGILRLYDALEPSDLRSWTLTSEMKVLSIPP  163 (351)
T ss_dssp             EEEEECTTSCTTSSCSEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTCEEEEEECSSTTCTTCCEEEEEEESCSCCC
T ss_pred             EEEecCCCcccccccCcceeeeecccCCceeEEEEcCCCCCcEEEEecCCCcEEEecCCChHHhcccccccccccccccc
Confidence            999997642      12456778889999999999997435689999999999999987543211110          11


Q ss_pred             ccCCCCeEEEEeCCCCCCCceeecccCCCceeEEEeeCCCcEEEEEEecCccccccccccccCCCceeEEEeeCCCCCCc
Q 022111          146 QAHPVGVTSVSWAPAMAPGALVGLGLLDPVQKLASCGCDNTVKVWKMYNGIWKMDCFPALQMHSDWVRSVAWAPNLGLPK  225 (302)
Q Consensus       146 ~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~D~~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~  225 (302)
                      ..|...+.++.|+|...           .+..|++++.|+.+.+|+...+.  ......+.+|...|.+++|+|++....
T Consensus       164 ~~~~~~~~~~~~~p~~~-----------~~~~l~~~~~~~~~~~~~~~~~~--~~~~~~~~~h~~~i~~~~~~p~~~~~~  230 (351)
T 3f3f_A          164 ANHLQSDFCLSWCPSRF-----------SPEKLAVSALEQAIIYQRGKDGK--LHVAAKLPGHKSLIRSISWAPSIGRWY  230 (351)
T ss_dssp             SSCSCCCEEEEECCCSS-----------SCCEEEEEETTEEEEEEECTTSC--EEEEEECCCCCSCEEEEEECCCSSCSS
T ss_pred             CCcccceeEEEeccCCC-----------CCcEEEEecCCCcEEEEccCCCc--eeeeeecCCCCcceeEEEECCCCCCcc
Confidence            24667889999998621           14689999999999777765542  223556788999999999999852112


Q ss_pred             cEEEEEecCCeEEEEEeccCCcc-------------------------------------------eeeeeeccCCCcEE
Q 022111          226 STIASASQDGTVVIWTCAKEGEQ-------------------------------------------WEGRVLKDFKTPVW  262 (302)
Q Consensus       226 ~~l~s~s~D~~i~iwd~~~~~~~-------------------------------------------~~~~~~~~~~~~v~  262 (302)
                      ++|++++.|+.|++||++.....                                           .......+|...|.
T Consensus       231 ~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~  310 (351)
T 3f3f_A          231 QLIATGCKDGRIRIFKITEKLSPLASEESLTNSNMFDNSADVDMDAQGRSDSNTEEKAELQSNLQVELLSEHDDHNGEVW  310 (351)
T ss_dssp             EEEEEEETTSCEEEEEEEECC---------------------------------------CCSEEEEEEEEECTTSSCEE
T ss_pred             eEEEEEcCCCeEEEEeCCCCcCccccCCcccceeccCCCcccccccccccccccceeeeecccccccEEEEEecccccEE
Confidence            68999999999999999753100                                           01122356778999


Q ss_pred             EEEEccCCCEEEEecCC-ceEEeeecCCceEEEeeecCCC
Q 022111          263 SVSWSLTGNLLAVADAN-NVTLWKEAVDGEWQQVSVVEPQ  301 (302)
Q Consensus       263 ~~~~spdg~~la~~~~d-~i~~w~~~~~~~~~~~~~~~~~  301 (302)
                      +++|+|+|++|++++.| .|++|+....+.|+++.++..+
T Consensus       311 ~~~~s~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~  350 (351)
T 3f3f_A          311 SVSWNLTGTILSSAGDDGKVRLWKATYSNEFKCMSVITAQ  350 (351)
T ss_dssp             EEEECSSSCCEEEEETTSCEEEEEECTTSCEEEEEEEC--
T ss_pred             EEEEcCCCCEEEEecCCCcEEEEecCcCcchhheeehccc
Confidence            99999999999999988 6999999988899999887654

>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}

Probab=100.00  E-value=8.8e-40  Score=288.97  Aligned_cols=265  Identities=18%  Similarity=0.264  Sum_probs=206.8

Q ss_pred             CCCcccccccccceeEEEEccCCCEEEEeeCCCcEEEEeecCCCceEEEEecCcccCeEEEEeeCCCCCCEEEEEeCCCe
Q 022111            1 MPAQKIETGHEDTVHDVAMDFYGKRLATASSDSSIKIIGLSNSASQHLATLKGHRGPVWQVAWAHPKFGSILASCSYDGQ   80 (302)
Q Consensus         1 ~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~s~D~~   80 (302)
                      |.+.++...|..+|++++|+|++++||+|+.|++|++|++.....+.+..+.+|...|.+++|+++  +++|++++.|++
T Consensus         1 m~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~s~~--~~~l~s~s~d~~   78 (377)
T 3dwl_C            1 MATSQVLHILPKPSYEHAFNSQRTEFVTTTATNQVELYEQDGNGWKHARTFSDHDKIVTCVDWAPK--SNRIVTCSQDRN   78 (377)
T ss_dssp             -CCEEEEEECSSCCSCCEECSSSSEEECCCSSSCBCEEEEETTEEEECCCBCCCSSCEEEEEECTT--TCCEEEEETTSS
T ss_pred             CCcceeEecCCCcEEEEEECCCCCEEEEecCCCEEEEEEccCCceEEEEEEecCCceEEEEEEeCC--CCEEEEEeCCCe
Confidence            566677777888999999999999999999999999999976432566788899999999999864  789999999999


Q ss_pred             EEEEEcCCCCceeEEEEecCCCCCeeEEEecCCCCCcEEEEEecCCcEEEEEecCCCCeee-eeecccCCCCeEEEEeCC
Q 022111           81 VIIWKEGNQNDWTQAHTFNDHKSSVNSIAWAPHELGLSLACGSSDGNISVFTATADGGWDT-TRIDQAHPVGVTSVSWAP  159 (302)
Q Consensus        81 i~iwd~~~~~~~~~~~~~~~h~~~i~~l~~~pd~~~~~l~sg~~d~~v~~~~~~~~~~~~~-~~~~~~h~~~v~~~~~~~  159 (302)
                      |++||+.+...+.+...+..|...|.+++|+|+  +.+|++|+.|+.|++||+.....+.. ..+...|...|.+++|+|
T Consensus        79 v~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~~v~~~~~~~  156 (377)
T 3dwl_C           79 AYVYEKRPDGTWKQTLVLLRLNRAATFVRWSPN--EDKFAVGSGARVISVCYFEQENDWWVSKHLKRPLRSTILSLDWHP  156 (377)
T ss_dssp             EEEC------CCCCEEECCCCSSCEEEEECCTT--SSCCEEEESSSCEEECCC-----CCCCEEECSSCCSCEEEEEECT
T ss_pred             EEEEEcCCCCceeeeeEecccCCceEEEEECCC--CCEEEEEecCCeEEEEEECCcccceeeeEeecccCCCeEEEEEcC
Confidence            999999775423456677889999999999997  66899999999999999876543222 334323899999999998


Q ss_pred             CCCCCceeecccCCCceeEEEeeCCCcEEEEEEecCcc--------------ccccccccccCCCceeEEEeeCCCCCCc
Q 022111          160 AMAPGALVGLGLLDPVQKLASCGCDNTVKVWKMYNGIW--------------KMDCFPALQMHSDWVRSVAWAPNLGLPK  225 (302)
Q Consensus       160 ~~~~~~~~~~~~~~~~~~l~s~~~D~~v~iwd~~~~~~--------------~~~~~~~~~~h~~~v~~v~~~p~~~~~~  225 (302)
                      ++              .+|++++.|+.|++||+.....              ...+...+ +|...|.+++|+|++    
T Consensus       157 ~~--------------~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~sp~~----  217 (377)
T 3dwl_C          157 NN--------------VLLAAGCADRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEY-PSGGWVHAVGFSPSG----  217 (377)
T ss_dssp             TS--------------SEEEEEESSSCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECC-CCSSSEEEEEECTTS----
T ss_pred             CC--------------CEEEEEeCCCEEEEEEEEecccCCCccccccccccchhhhhhcc-cCCceEEEEEECCCC----
Confidence            63              7899999999999999953210              11334455 899999999999995    


Q ss_pred             cEEEEEecCCeEEEEEeccCCccee-eeeeccCCCcEEEEEEccCCCEEEEecCCceEEeeecC
Q 022111          226 STIASASQDGTVVIWTCAKEGEQWE-GRVLKDFKTPVWSVSWSLTGNLLAVADANNVTLWKEAV  288 (302)
Q Consensus       226 ~~l~s~s~D~~i~iwd~~~~~~~~~-~~~~~~~~~~v~~~~~spdg~~la~~~~d~i~~w~~~~  288 (302)
                      ++|++++.|+.|++||++....... ...+..+..+|.+++|+|+|++|++++.+++.+|+...
T Consensus       218 ~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~~~~  281 (377)
T 3dwl_C          218 NALAYAGHDSSVTIAYPSAPEQPPRALITVKLSQLPLRSLLWANESAIVAAGYNYSPILLQGNE  281 (377)
T ss_dssp             SCEEEEETTTEEC-CEECSTTSCEEECCCEECSSSCEEEEEEEETTEEEEEESSSSEEEECCCC
T ss_pred             CEEEEEeCCCcEEEEECCCCCCcceeeEeecCCCCceEEEEEcCCCCEEEEEcCCcEEEEEeCC
Confidence            6899999999999999986543110 12345677889999999999999999888888888653

>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A

Probab=100.00  E-value=5.3e-38  Score=295.51  Aligned_cols=270  Identities=19%  Similarity=0.260  Sum_probs=205.6

Q ss_pred             cccccccceeEEEEccCCCEEEEeeCCCcEEEEeecCCCceEEEEec-------CcccCeEEEEeeCCCCCCEEEEEeCC
Q 022111            6 IETGHEDTVHDVAMDFYGKRLATASSDSSIKIIGLSNSASQHLATLK-------GHRGPVWQVAWAHPKFGSILASCSYD   78 (302)
Q Consensus         6 ~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~lw~~~~~~~~~~~~~~-------~h~~~v~~v~~~~~~~~~~l~s~s~D   78 (302)
                      ++.+|.+.|++++|+|++++||+|+.|++|+|||+..+  +.+..+.       +|.+.|++++|+|+  +++|+|++.|
T Consensus       185 ~l~~H~~~V~~v~fspdg~~las~s~D~~i~lwd~~~g--~~~~~~~~~~~~~~~h~~~V~~v~~spd--g~~l~s~s~D  260 (611)
T 1nr0_A          185 TFGEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDG--TKTGVFEDDSLKNVAHSGSVFGLTWSPD--GTKIASASAD  260 (611)
T ss_dssp             EECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTC--CEEEECBCTTSSSCSSSSCEEEEEECTT--SSEEEEEETT
T ss_pred             eeccccCceEEEEECCCCCEEEEEECCCcEEEEECCCC--cEeeeeccccccccccCCCEEEEEECCC--CCEEEEEeCC
Confidence            46789999999999999999999999999999998653  3445553       79999999999864  8999999999


Q ss_pred             CeEEEEEcCCCCce----------------------------------------eEEEEecCCCCCeeEEEecCCCCCcE
Q 022111           79 GQVIIWKEGNQNDW----------------------------------------TQAHTFNDHKSSVNSIAWAPHELGLS  118 (302)
Q Consensus        79 ~~i~iwd~~~~~~~----------------------------------------~~~~~~~~h~~~i~~l~~~pd~~~~~  118 (302)
                      ++|++||+++....                                        .....+.+|...|.+++|+|+  +.+
T Consensus       261 ~~v~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~i~~~~~~~~~~~~~~~gh~~~v~~l~~spd--g~~  338 (611)
T 1nr0_A          261 KTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQALVSISANGFINFVNPELGSIDQVRYGHNKAITALSSSAD--GKT  338 (611)
T ss_dssp             SEEEEEETTTTEEEEEEECCSSGGGCEEEEEECSSCEEEEETTCCEEEEETTTTEEEEEECCCSSCEEEEEECTT--SSE
T ss_pred             CeEEEEeCCCCceeeeecCCCCccceeEEEEEcCCEEEEEeCCCcEEEEeCCCCCcceEEcCCCCCEEEEEEeCC--CCE
Confidence            99999998754211                                        122345689999999999998  779


Q ss_pred             EEEEecCCcEEEEEecCCCCeeeeeecccCCCCeEEEEeCCCCCC-----------------------------------
Q 022111          119 LACGSSDGNISVFTATADGGWDTTRIDQAHPVGVTSVSWAPAMAP-----------------------------------  163 (302)
Q Consensus       119 l~sg~~d~~v~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~-----------------------------------  163 (302)
                      |++++.|++|++||+.....  ...+...|...+.+++|++....                                   
T Consensus       339 l~s~s~D~~v~~Wd~~~~~~--~~~~~~~h~~~v~~~~~s~~~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~  416 (611)
T 1nr0_A          339 LFSADAEGHINSWDISTGIS--NRVFPDVHATMITGIKTTSKGDLFTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLG  416 (611)
T ss_dssp             EEEEETTSCEEEEETTTCCE--EECSSCSCSSCEEEEEECTTSCEEEEETTTEEEEECSSSSSSCTTSCCEEECSSCEEE
T ss_pred             EEEEeCCCcEEEEECCCCce--eeecccCCcceEEEEEECCCCcEEEEEcCCceEEeecCCccccccceeeeecCCCCcE
Confidence            99999999999999875321  11122345556666665432100                                   


Q ss_pred             --------------------------------CceeecccCCCceeEEEeeCCCcEEEEEEecCccccccccccccCCCc
Q 022111          164 --------------------------------GALVGLGLLDPVQKLASCGCDNTVKVWKMYNGIWKMDCFPALQMHSDW  211 (302)
Q Consensus       164 --------------------------------~~~~~~~~~~~~~~l~s~~~D~~v~iwd~~~~~~~~~~~~~~~~h~~~  211 (302)
                                                      .....+.+.+++++||+|+.|++|+|||+.++..  ..... .+|...
T Consensus       417 ~~~s~dg~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~va~spdg~~lasgs~D~~v~lwd~~~~~~--~~~~~-~~h~~~  493 (611)
T 1nr0_A          417 LAVSADGDIAVAACYKHIAIYSHGKLTEVPISYNSSCVALSNDKQFVAVGGQDSKVHVYKLSGASV--SEVKT-IVHPAE  493 (611)
T ss_dssp             EEECTTSSCEEEEESSEEEEEETTEEEEEECSSCEEEEEECTTSCEEEEEETTSEEEEEEEETTEE--EEEEE-EECSSC
T ss_pred             EEEeCCCcEEEEEeCceEEEEeCCceeeeecCCCceEEEEeCCCCEEEEeCCCCeEEEEEccCCce--eeeec-cCCCCc
Confidence                                            0011233456688999999999999999986531  12233 679999


Q ss_pred             eeEEEeeCCCCCCccEEEEEecCCeEEEEEeccCCcceeeeeeccCCCcEEEEEEccCCCEEEEecCC-ceEEeeecCCc
Q 022111          212 VRSVAWAPNLGLPKSTIASASQDGTVVIWTCAKEGEQWEGRVLKDFKTPVWSVSWSLTGNLLAVADAN-NVTLWKEAVDG  290 (302)
Q Consensus       212 v~~v~~~p~~~~~~~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~la~~~~d-~i~~w~~~~~~  290 (302)
                      |++|+|+|++    ++|++++.|++|++|++..............|...|++++|||||++||+|+.| .|++|+....+
T Consensus       494 v~~v~fspdg----~~las~s~d~~v~~w~~~~~~~~~~~~~~~~H~~~V~~v~fspdg~~lasgs~D~~v~lW~~~~~~  569 (611)
T 1nr0_A          494 ITSVAFSNNG----AFLVATDQSRKVIPYSVANNFELAHTNSWTFHTAKVACVSWSPDNVRLATGSLDNSVIVWNMNKPS  569 (611)
T ss_dssp             EEEEEECTTS----SEEEEEETTSCEEEEEGGGTTEESCCCCCCCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTCTT
T ss_pred             eEEEEECCCC----CEEEEEcCCCCEEEEEcCCCCceeeeeeeeecccceeEEEECCCCCEEEEEECCCcEEEEECCCcc
Confidence            9999999995    789999999999999987532211111223488899999999999999999999 79999986543

>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*

Probab=100.00  E-value=9.1e-38  Score=273.36  Aligned_cols=245  Identities=17%  Similarity=0.217  Sum_probs=202.7

Q ss_pred             ccccccceeEEEEccCCCEEEEeeCCCcEEEEeecCCC--ceEEEEecCcccCeEEEEeeCCCCCCEEEEEeCCCeEEEE
Q 022111            7 ETGHEDTVHDVAMDFYGKRLATASSDSSIKIIGLSNSA--SQHLATLKGHRGPVWQVAWAHPKFGSILASCSYDGQVIIW   84 (302)
Q Consensus         7 ~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~lw~~~~~~--~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~s~D~~i~iw   84 (302)
                      +..|...|.+++|+|++++|++|+.|+.|++|++....  ......+.+|.+.|.+++|+++   ..+++++.|++|++|
T Consensus        93 ~~~~~~~v~~~~~s~~~~~l~s~~~d~~v~iw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~---~~l~s~s~d~~i~~w  169 (340)
T 1got_B           93 IPLRSSWVMTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDD---NQIVTSSGDTTCALW  169 (340)
T ss_dssp             EECSSSCEEEEEECTTSSEEEEEETTCEEEEEETTTCSBSCEEEEEEECCSSCEEEEEEEET---TEEEEEETTSCEEEE
T ss_pred             eecCCccEEEEEECCCCCEEEEEeCCCeEEEEECccCCCcceeEEEecCCCccEEEEEECCC---CcEEEEECCCcEEEE
Confidence            45788999999999999999999999999999986532  2345678899999999999753   468999999999999


Q ss_pred             EcCCCCceeEEEEecCCCCCeeEEEecCCCCCcEEEEEecCCcEEEEEecCCCCeeeeeecccCCCCeEEEEeCCCCCCC
Q 022111           85 KEGNQNDWTQAHTFNDHKSSVNSIAWAPHELGLSLACGSSDGNISVFTATADGGWDTTRIDQAHPVGVTSVSWAPAMAPG  164 (302)
Q Consensus        85 d~~~~~~~~~~~~~~~h~~~i~~l~~~pd~~~~~l~sg~~d~~v~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~  164 (302)
                      |++++   ....++.+|...|.+++|+|+  +.++++|+.|+.|++||++....  ...+ .+|...|.+++|+|++   
T Consensus       170 d~~~~---~~~~~~~~h~~~v~~~~~~~~--~~~l~sg~~d~~v~~wd~~~~~~--~~~~-~~h~~~v~~v~~~p~~---  238 (340)
T 1got_B          170 DIETG---QQTTTFTGHTGDVMSLSLAPD--TRLFVSGACDASAKLWDVREGMC--RQTF-TGHESDINAICFFPNG---  238 (340)
T ss_dssp             ETTTT---EEEEEECCCSSCEEEEEECTT--SSEEEEEETTSCEEEEETTTCSE--EEEE-CCCSSCEEEEEECTTS---
T ss_pred             ECCCC---cEEEEEcCCCCceEEEEECCC--CCEEEEEeCCCcEEEEECCCCee--EEEE-cCCcCCEEEEEEcCCC---
Confidence            99775   466788899999999999998  66999999999999999875432  2333 3788999999999864   


Q ss_pred             ceeecccCCCceeEEEeeCCCcEEEEEEecCccccccccccccCCCceeEEEeeCCCCCCccEEEEEecCCeEEEEEecc
Q 022111          165 ALVGLGLLDPVQKLASCGCDNTVKVWKMYNGIWKMDCFPALQMHSDWVRSVAWAPNLGLPKSTIASASQDGTVVIWTCAK  244 (302)
Q Consensus       165 ~~~~~~~~~~~~~l~s~~~D~~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~l~s~s~D~~i~iwd~~~  244 (302)
                                 ..|++|+.|++|++||++++.....  .....+...|.+++|+|++    .+|++|+.|+.|++||+..
T Consensus       239 -----------~~l~s~s~d~~v~iwd~~~~~~~~~--~~~~~~~~~v~~~~~s~~g----~~l~~g~~d~~i~vwd~~~  301 (340)
T 1got_B          239 -----------NAFATGSDDATCRLFDLRADQELMT--YSHDNIICGITSVSFSKSG----RLLLAGYDDFNCNVWDALK  301 (340)
T ss_dssp             -----------SEEEEEETTSCEEEEETTTTEEEEE--ECCTTCCSCEEEEEECTTS----SEEEEEETTSEEEEEETTT
T ss_pred             -----------CEEEEEcCCCcEEEEECCCCcEEEE--EccCCcccceEEEEECCCC----CEEEEECCCCeEEEEEccc
Confidence                       7899999999999999986532111  1122345579999999995    7899999999999999875


Q ss_pred             CCcceeeeeeccCCCcEEEEEEccCCCEEEEecCC-ceEEee
Q 022111          245 EGEQWEGRVLKDFKTPVWSVSWSLTGNLLAVADAN-NVTLWK  285 (302)
Q Consensus       245 ~~~~~~~~~~~~~~~~v~~~~~spdg~~la~~~~d-~i~~w~  285 (302)
                      ...   ...+.+|..+|.+++|+|+|++|++|+.| .|+||+
T Consensus       302 ~~~---~~~~~~h~~~v~~~~~s~dg~~l~s~s~D~~i~iWd  340 (340)
T 1got_B          302 ADR---AGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN  340 (340)
T ss_dssp             CCE---EEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEEC
T ss_pred             CcE---eeEeecCCCcEEEEEEcCCCCEEEEEcCCccEEecC
Confidence            432   23456888999999999999999999998 799996

>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A

Probab=100.00  E-value=3.7e-38  Score=296.61  Aligned_cols=251  Identities=23%  Similarity=0.343  Sum_probs=202.9

Q ss_pred             ccccccccceeEEEEccCCCEEEEeeCCCcEEEEeecCCCceEEEEecCcccCeEEEEeeCCCCCCEEEEEeCC----Ce
Q 022111            5 KIETGHEDTVHDVAMDFYGKRLATASSDSSIKIIGLSNSASQHLATLKGHRGPVWQVAWAHPKFGSILASCSYD----GQ   80 (302)
Q Consensus         5 ~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~s~D----~~   80 (302)
                      .++.+|...|++++|+|+|++||+|+.|++|+|||+..........+.+|.+.|.+++|+|+  +++|++++.+    ++
T Consensus        53 ~~~~~h~~~v~~~~~spdg~~lasg~~d~~v~lWd~~~~~~~~~~~~~~~~~~v~~v~fs~d--g~~l~~~~~~~~~~~~  130 (611)
T 1nr0_A           53 EIYTEHSHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQTTHILKTTIPVFSGPVKDISWDSE--SKRIAAVGEGRERFGH  130 (611)
T ss_dssp             EEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEESSSTTCCEEEEEECSSSCEEEEEECTT--SCEEEEEECCSSCSEE
T ss_pred             eEecCCCCceEEEEECCCCcEEEEEeCCCCEEEeECCCCcceeeEeecccCCceEEEEECCC--CCEEEEEECCCCceeE
Confidence            45679999999999999999999999999999999864433445678899999999999874  8899988875    47


Q ss_pred             EEEEEcCCCCceeEEEEecCCCCCeeEEEecCCCCCcEEEEEecCCcEEEEEecCCCCeeeeeecccCCCCeEEEEeCCC
Q 022111           81 VIIWKEGNQNDWTQAHTFNDHKSSVNSIAWAPHELGLSLACGSSDGNISVFTATADGGWDTTRIDQAHPVGVTSVSWAPA  160 (302)
Q Consensus        81 i~iwd~~~~~~~~~~~~~~~h~~~i~~l~~~pd~~~~~l~sg~~d~~v~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~  160 (302)
                      |++||...     ....+.+|...|.+++|+|+. ..+|++|+.|++|++||....  .....+ .+|...|.+++|+|+
T Consensus       131 v~~wd~~~-----~~~~l~gh~~~v~~v~f~p~~-~~~l~s~s~D~~v~lwd~~~~--~~~~~l-~~H~~~V~~v~fspd  201 (611)
T 1nr0_A          131 VFLFDTGT-----SNGNLTGQARAMNSVDFKPSR-PFRIISGSDDNTVAIFEGPPF--KFKSTF-GEHTKFVHSVRYNPD  201 (611)
T ss_dssp             EEETTTCC-----BCBCCCCCSSCEEEEEECSSS-SCEEEEEETTSCEEEEETTTB--EEEEEE-CCCSSCEEEEEECTT
T ss_pred             EEEeeCCC-----CcceecCCCCCceEEEECCCC-CeEEEEEeCCCeEEEEECCCC--eEeeee-ccccCceEEEEECCC
Confidence            88887432     345678999999999999983 246999999999999997542  122334 389999999999996


Q ss_pred             CCCCceeecccCCCceeEEEeeCCCcEEEEEEecCcccccccccc-------ccCCCceeEEEeeCCCCCCccEEEEEec
Q 022111          161 MAPGALVGLGLLDPVQKLASCGCDNTVKVWKMYNGIWKMDCFPAL-------QMHSDWVRSVAWAPNLGLPKSTIASASQ  233 (302)
Q Consensus       161 ~~~~~~~~~~~~~~~~~l~s~~~D~~v~iwd~~~~~~~~~~~~~~-------~~h~~~v~~v~~~p~~~~~~~~l~s~s~  233 (302)
                      +              ++|++|+.|++|+|||+.++.    +...+       .+|.+.|.+++|+|++    .+|++++.
T Consensus       202 g--------------~~las~s~D~~i~lwd~~~g~----~~~~~~~~~~~~~~h~~~V~~v~~spdg----~~l~s~s~  259 (611)
T 1nr0_A          202 G--------------SLFASTGGDGTIVLYNGVDGT----KTGVFEDDSLKNVAHSGSVFGLTWSPDG----TKIASASA  259 (611)
T ss_dssp             S--------------SEEEEEETTSCEEEEETTTCC----EEEECBCTTSSSCSSSSCEEEEEECTTS----SEEEEEET
T ss_pred             C--------------CEEEEEECCCcEEEEECCCCc----EeeeeccccccccccCCCEEEEEECCCC----CEEEEEeC
Confidence            4              789999999999999987663    22233       2799999999999995    78999999


Q ss_pred             CCeEEEEEeccCCcce----------------------------------------eeeeeccCCCcEEEEEEccCCCEE
Q 022111          234 DGTVVIWTCAKEGEQW----------------------------------------EGRVLKDFKTPVWSVSWSLTGNLL  273 (302)
Q Consensus       234 D~~i~iwd~~~~~~~~----------------------------------------~~~~~~~~~~~v~~~~~spdg~~l  273 (302)
                      |++|++||++......                                        ....+.+|...|++++|+|||++|
T Consensus       260 D~~v~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~i~~~~~~~~~~~~~~~gh~~~v~~l~~spdg~~l  339 (611)
T 1nr0_A          260 DKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQALVSISANGFINFVNPELGSIDQVRYGHNKAITALSSSADGKTL  339 (611)
T ss_dssp             TSEEEEEETTTTEEEEEEECCSSGGGCEEEEEECSSCEEEEETTCCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEE
T ss_pred             CCeEEEEeCCCCceeeeecCCCCccceeEEEEEcCCEEEEEeCCCcEEEEeCCCCCcceEEcCCCCCEEEEEEeCCCCEE
Confidence            9999999987532100                                        001234677889999999999999


Q ss_pred             EEecCC-ceEEeeecC
Q 022111          274 AVADAN-NVTLWKEAV  288 (302)
Q Consensus       274 a~~~~d-~i~~w~~~~  288 (302)
                      ++++.| .|++|+...
T Consensus       340 ~s~s~D~~v~~Wd~~~  355 (611)
T 1nr0_A          340 FSADAEGHINSWDIST  355 (611)
T ss_dssp             EEEETTSCEEEEETTT
T ss_pred             EEEeCCCcEEEEECCC
Confidence            999998 799999753

>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*

Probab=100.00  E-value=1.8e-37  Score=269.24  Aligned_cols=248  Identities=19%  Similarity=0.284  Sum_probs=198.7

Q ss_pred             cccccccceeEEEEccCCCEEEEeeCCCcEEEEeecCCCceEEEEecCcccCeEEEEeeCCCCCCEEEEEeCCCeEEEEE
Q 022111            6 IETGHEDTVHDVAMDFYGKRLATASSDSSIKIIGLSNSASQHLATLKGHRGPVWQVAWAHPKFGSILASCSYDGQVIIWK   85 (302)
Q Consensus         6 ~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~s~D~~i~iwd   85 (302)
                      .+.+|...|++++|++++++|++|+.|++|++||+..  .+.+..+.+|...|.+++|+++  +.+|++|+.|++|++||
T Consensus        60 ~~~~h~~~v~~~~~s~dg~~l~s~s~D~~v~~wd~~~--~~~~~~~~~h~~~v~~~~~~~~--~~~l~s~s~D~~i~vwd  135 (319)
T 3frx_A           60 SFKGHSHIVQDCTLTADGAYALSASWDKTLRLWDVAT--GETYQRFVGHKSDVMSVDIDKK--ASMIISGSRDKTIKVWT  135 (319)
T ss_dssp             EEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTT--TEEEEEEECCSSCEEEEEECTT--SCEEEEEETTSCEEEEE
T ss_pred             EEeCCcccEEEEEECCCCCEEEEEeCCCEEEEEECCC--CCeeEEEccCCCcEEEEEEcCC--CCEEEEEeCCCeEEEEE
Confidence            4679999999999999999999999999999999865  4567788999999999999864  78999999999999999


Q ss_pred             cCCCCceeEEEEecCCCCCeeEEEecCCC----CCcEEEEEecCCcEEEEEecCCCCeeeeeecccCCCCeEEEEeCCCC
Q 022111           86 EGNQNDWTQAHTFNDHKSSVNSIAWAPHE----LGLSLACGSSDGNISVFTATADGGWDTTRIDQAHPVGVTSVSWAPAM  161 (302)
Q Consensus        86 ~~~~~~~~~~~~~~~h~~~i~~l~~~pd~----~~~~l~sg~~d~~v~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~  161 (302)
                      ++..    +...+.+|...|.++.|+|..    .+..+++++.|+.|++||+....  ....+ .+|...|.+++|+|+ 
T Consensus       136 ~~~~----~~~~~~~h~~~v~~~~~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~--~~~~~-~~h~~~v~~~~~sp~-  207 (319)
T 3frx_A          136 IKGQ----CLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQ--IEADF-IGHNSNINTLTASPD-  207 (319)
T ss_dssp             TTSC----EEEEECCCSSCEEEEEECCC------CCEEEEEETTSCEEEEETTTTE--EEEEE-CCCCSCEEEEEECTT-
T ss_pred             CCCC----eEEEEeccCCcEEEEEEccCCCCCCCccEEEEEeCCCEEEEEECCcch--hheee-cCCCCcEEEEEEcCC-
Confidence            8643    567788999999999999853    24589999999999999987432  22233 379999999999986 


Q ss_pred             CCCceeecccCCCceeEEEeeCCCcEEEEEEecCccccccccccccCCCceeEEEeeCCCCCCccEEEEEecCCeEEEEE
Q 022111          162 APGALVGLGLLDPVQKLASCGCDNTVKVWKMYNGIWKMDCFPALQMHSDWVRSVAWAPNLGLPKSTIASASQDGTVVIWT  241 (302)
Q Consensus       162 ~~~~~~~~~~~~~~~~l~s~~~D~~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~l~s~s~D~~i~iwd  241 (302)
                                   +++|++|+.|++|+|||+.++.    ++..+.. ...|.+++|+|++    ..|++++. ..+++|+
T Consensus       208 -------------g~~l~s~~~dg~i~iwd~~~~~----~~~~~~~-~~~v~~~~~sp~~----~~la~~~~-~~i~v~~  264 (319)
T 3frx_A          208 -------------GTLIASAGKDGEIMLWNLAAKK----AMYTLSA-QDEVFSLAFSPNR----YWLAAATA-TGIKVFS  264 (319)
T ss_dssp             -------------SSEEEEEETTCEEEEEETTTTE----EEEEEEC-CSCEEEEEECSSS----SEEEEEET-TEEEEEE
T ss_pred             -------------CCEEEEEeCCCeEEEEECCCCc----EEEEecC-CCcEEEEEEcCCC----CEEEEEcC-CCcEEEE
Confidence                         4799999999999999998763    3344443 4679999999995    66777664 5699999


Q ss_pred             eccCCcceee--e---eeccCCCcEEEEEEccCCCEEEEecCC-ceEEeeecC
Q 022111          242 CAKEGEQWEG--R---VLKDFKTPVWSVSWSLTGNLLAVADAN-NVTLWKEAV  288 (302)
Q Consensus       242 ~~~~~~~~~~--~---~~~~~~~~v~~~~~spdg~~la~~~~d-~i~~w~~~~  288 (302)
                      +.........  .   ....+...+.+++|||||++|++|+.| .|++|+...
T Consensus       265 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~sg~~Dg~i~vWd~~t  317 (319)
T 3frx_A          265 LDPQYLVDDLRPEFAGYSKAAEPHAVSLAWSADGQTLFAGYTDNVIRVWQVMT  317 (319)
T ss_dssp             ETTEEEEEEECCCCTTCCGGGCCCEEEEEECTTSSEEEEEETTSCEEEEEEEE
T ss_pred             eCcCeeeeccCccccccccCcCcceeEEEECCCCCEEEEeecCceEEEEEEee
Confidence            8643111000  0   012334579999999999999999998 799999753

>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}

Probab=100.00  E-value=3e-38  Score=303.83  Aligned_cols=289  Identities=45%  Similarity=0.826  Sum_probs=224.5

Q ss_pred             ccccccccceeEEEEccCCCEEEEeeCCCcEEEEeecCCCceEEEEecCcccCeEEEEeeCCCCCCEEEEEeCCCeEEEE
Q 022111            5 KIETGHEDTVHDVAMDFYGKRLATASSDSSIKIIGLSNSASQHLATLKGHRGPVWQVAWAHPKFGSILASCSYDGQVIIW   84 (302)
Q Consensus         5 ~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~s~D~~i~iw   84 (302)
                      .++.+|.+.|++++|+|++++|++|+.||+|++|++.......+..+.+|.+.|++++|+++.++++|++|+.|++|++|
T Consensus         3 ~~l~gH~~~V~~l~~s~dg~~latg~~dg~I~vwd~~~~~~~~~~~l~~h~~~V~~l~~s~~~~~~~l~s~s~Dg~I~vw   82 (753)
T 3jro_A            3 VIANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLIW   82 (753)
T ss_dssp             -----CCCCEEEECCCSSSCCEEEEETTTEEEEEEEETTEEEEEEEECCCSSCEEEEEECCTTSCSEEEEEETTSCEEEE
T ss_pred             eecccCcceeEEEEECCCCCeEEEEECCCcEEEEecCCCCCccceeccCCcCceEEEEecCCCCCCEEEEEeCCCeEEEE
Confidence            46789999999999999999999999999999999976556677889999999999999876558899999999999999


Q ss_pred             EcCCCCceeEEEEecCCCCCeeEEEecCCCCCcEEEEEecCCcEEEEEecCCCCeeeeeecccCCCCeEEEEeCCCCCCC
Q 022111           85 KEGNQNDWTQAHTFNDHKSSVNSIAWAPHELGLSLACGSSDGNISVFTATADGGWDTTRIDQAHPVGVTSVSWAPAMAPG  164 (302)
Q Consensus        85 d~~~~~~~~~~~~~~~h~~~i~~l~~~pd~~~~~l~sg~~d~~v~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~  164 (302)
                      |+.++ .......+..|...|.+++|+|+..+..+++|+.|+.|++||+..........+ ..|...|.++.|+|.....
T Consensus        83 d~~~~-~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~vwdl~~~~~~~~~~~-~~~~~~v~~l~~~p~~~~~  160 (753)
T 3jro_A           83 KEENG-RWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIII-DAHAIGVNSASWAPATIEE  160 (753)
T ss_dssp             EEETT-EEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCSSSCCCCEEE-ECCSSCEEEEEECCCC---
T ss_pred             ECCCC-cccccccccCCCCCeEEEEECCCCCCCEEEEEeCCCcEEEEEeecCCCcceeEe-ecCCCceEEEEecCccccc
Confidence            99764 234567788899999999999974356899999999999999986533333333 3788899999999852111


Q ss_pred             ceeecccCCCceeEEEeeCCCcEEEEEEecCccccccccccccCCCceeEEEeeCCCCCCccEEEEEecCCeEEEEEecc
Q 022111          165 ALVGLGLLDPVQKLASCGCDNTVKVWKMYNGIWKMDCFPALQMHSDWVRSVAWAPNLGLPKSTIASASQDGTVVIWTCAK  244 (302)
Q Consensus       165 ~~~~~~~~~~~~~l~s~~~D~~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~l~s~s~D~~i~iwd~~~  244 (302)
                      .. .....+++..|++|+.|+.|++||++++.....+...+.+|...|.+++|+|+. ..+..|++++.||.|++||++.
T Consensus       161 ~~-~~~~~~d~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~-~~~~~l~s~s~Dg~I~iwd~~~  238 (753)
T 3jro_A          161 DG-EHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTV-LLRSYLASVSQDRTCIIWTQDN  238 (753)
T ss_dssp             -------CGGGCCEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCC-SSSEEEEEEESSSCEEEEEESS
T ss_pred             cc-ccccCCCCCEEEEEECCCeEEEEeccCCcccceeeeeecCCCCcEEEEEeccCC-CCCCEEEEEecCCEEEEecCCC
Confidence            00 000112357899999999999999987654434556778999999999999982 0127899999999999999986


Q ss_pred             CCcceeeee--eccCCCcEEEEEEccCCCEEEEecCC-ceEEeeecCCceEEEeee
Q 022111          245 EGEQWEGRV--LKDFKTPVWSVSWSLTGNLLAVADAN-NVTLWKEAVDGEWQQVSV  297 (302)
Q Consensus       245 ~~~~~~~~~--~~~~~~~v~~~~~spdg~~la~~~~d-~i~~w~~~~~~~~~~~~~  297 (302)
                      .........  ...+...|++++|+|+|++|++++.| .|++|+....+.|.+...
T Consensus       239 ~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~Dg~I~vwd~~~~~~~~~~~~  294 (753)
T 3jro_A          239 EQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKENLEGKWEPAGE  294 (753)
T ss_dssp             SSSCCBCCBSSSSCCSSCCCCEEECTTTCCEEEECSSSCEECCBCCSSSCCBCCCC
T ss_pred             CCCcceeEEeccCCCCCceEEEEEcCCCCEEEEEcCCCEEEEEecCCCCCcccccc
Confidence            432211111  23467789999999999999999888 699999987777765543

>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}

Probab=100.00  E-value=1.8e-37  Score=272.18  Aligned_cols=251  Identities=17%  Similarity=0.168  Sum_probs=191.4

Q ss_pred             cccccceeEEEEccCCCEEEEeeCCCcEEEEeecC---------CCceEEEEecCcccCeEEEEeeCCCCCCEEEEEeCC
Q 022111            8 TGHEDTVHDVAMDFYGKRLATASSDSSIKIIGLSN---------SASQHLATLKGHRGPVWQVAWAHPKFGSILASCSYD   78 (302)
Q Consensus         8 ~~h~~~v~~~~~s~~~~~l~s~~~d~~v~lw~~~~---------~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~s~D   78 (302)
                      ..|+..|.+++|+|||++|++++ |+++|+||...         ...........|...|.+++|+++   ..|++|+.|
T Consensus        27 ~~~~~~v~~~~fs~dG~~l~~~s-d~~~r~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d---~~l~~~s~d  102 (344)
T 4gqb_B           27 ACMERQLEAARYRSDGALLLGAS-SLSGRCWAGSLWLFKDPCAAPNEGFCSAGVQTEAGVADLTWVGE---RGILVASDS  102 (344)
T ss_dssp             SSCCSEEEEEEECTTSCEEEEEE-CCSSSCCCEEEEEESSGGGTTCGGGCSEEEEESSCEEEEEEETT---TEEEEEETT
T ss_pred             ccccCCEEEEEECCCCCEEEEEe-CCceEEeeceeeeeccccccCCcceeeeeeccCCCEEEEEEeCC---CeEEEEECC
Confidence            35778899999999999999887 77888887320         001111222346778999999864   578899999


Q ss_pred             CeEEEEEcCCCCcee-EEEEecCCCCCeeEEEecCCCCCcEEEEEecCCcEEEEEecCCCCeeeeeecccCCCCeEEEEe
Q 022111           79 GQVIIWKEGNQNDWT-QAHTFNDHKSSVNSIAWAPHELGLSLACGSSDGNISVFTATADGGWDTTRIDQAHPVGVTSVSW  157 (302)
Q Consensus        79 ~~i~iwd~~~~~~~~-~~~~~~~h~~~i~~l~~~pd~~~~~l~sg~~d~~v~~~~~~~~~~~~~~~~~~~h~~~v~~~~~  157 (302)
                      ++|+|||++++.... ....+.+|.+.|++++|+|+  +.+|++|+.|++|++||+.+..  ....+ .+|...|.+++|
T Consensus       103 g~v~lWd~~~~~~~~~~~~~~~~H~~~V~~v~~spd--g~~l~sgs~d~~i~iwd~~~~~--~~~~~-~~h~~~V~~~~~  177 (344)
T 4gqb_B          103 GAVELWELDENETLIVSKFCKYEHDDIVSTVSVLSS--GTQAVSGSKDICIKVWDLAQQV--VLSSY-RAHAAQVTCVAA  177 (344)
T ss_dssp             SEEEEEEECTTSSCEEEEEEEECCSSCEEEEEECTT--SSEEEEEETTSCEEEEETTTTE--EEEEE-CCCSSCEEEEEE
T ss_pred             CEEEEEeccCCCceeEeeccccCCCCCEEEEEECCC--CCEEEEEeCCCeEEEEECCCCc--EEEEE-cCcCCceEEEEe
Confidence            999999997764322 22345689999999999998  7799999999999999987542  23344 389999999999


Q ss_pred             CCCCCCCceeecccCCCceeEEEeeCCCcEEEEEEecCccccccccccccCCCceeEEEeeCCCCCCccEEEEEecCCeE
Q 022111          158 APAMAPGALVGLGLLDPVQKLASCGCDNTVKVWKMYNGIWKMDCFPALQMHSDWVRSVAWAPNLGLPKSTIASASQDGTV  237 (302)
Q Consensus       158 ~~~~~~~~~~~~~~~~~~~~l~s~~~D~~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~l~s~s~D~~i  237 (302)
                      +|++             ..+|++|+.|++|+|||++++.....  .....|...+.+++|+|++   +.+|++|+.|++|
T Consensus       178 ~~~~-------------~~~l~s~s~D~~v~iwd~~~~~~~~~--~~~~~~~~~~~~~~~~p~~---~~~l~sg~~dg~v  239 (344)
T 4gqb_B          178 SPHK-------------DSVFLSCSEDNRILLWDTRCPKPASQ--IGCSAPGYLPTSLAWHPQQ---SEVFVFGDENGTV  239 (344)
T ss_dssp             CSSC-------------TTEEEEEETTSCEEEEETTSSSCEEE--CC----CCCEEEEEECSSC---TTEEEEEETTSEE
T ss_pred             cCCC-------------CCceeeeccccccccccccccceeee--eecceeeccceeeeecCCC---CcceEEeccCCcE
Confidence            9864             25789999999999999987632111  1123466779999999975   4789999999999


Q ss_pred             EEEEeccCCcceeeeeeccCCCcEEEEEEccCC-CEEEEecCC-ceEEeeecC
Q 022111          238 VIWTCAKEGEQWEGRVLKDFKTPVWSVSWSLTG-NLLAVADAN-NVTLWKEAV  288 (302)
Q Consensus       238 ~iwd~~~~~~~~~~~~~~~~~~~v~~~~~spdg-~~la~~~~d-~i~~w~~~~  288 (302)
                      +|||++....   ...+..|...|.+++|+|+| ++||+++.| .|+|||...
T Consensus       240 ~~wd~~~~~~---~~~~~~h~~~v~~v~fsp~g~~~lasgs~D~~i~vwd~~~  289 (344)
T 4gqb_B          240 SLVDTKSTSC---VLSSAVHSQCVTGLVFSPHSVPFLASLSEDCSLAVLDSSL  289 (344)
T ss_dssp             EEEESCC--C---CEEEECCSSCEEEEEECSSSSCCEEEEETTSCEEEECTTC
T ss_pred             EEEECCCCcE---EEEEcCCCCCEEEEEEccCCCeEEEEEeCCCeEEEEECCC
Confidence            9999986432   23346788899999999998 578999888 799999764

>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}

Probab=100.00  E-value=1.9e-37  Score=295.71  Aligned_cols=255  Identities=23%  Similarity=0.357  Sum_probs=208.2

Q ss_pred             cccccccceeEEEEccCC-CEEEEeeCCCcEEEEeecCCC---ceEEEEecCcccCeEEEEeeCCCCCCEEEEEeCCCeE
Q 022111            6 IETGHEDTVHDVAMDFYG-KRLATASSDSSIKIIGLSNSA---SQHLATLKGHRGPVWQVAWAHPKFGSILASCSYDGQV   81 (302)
Q Consensus         6 ~~~~h~~~v~~~~~s~~~-~~l~s~~~d~~v~lw~~~~~~---~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~s~D~~i   81 (302)
                      .+.+|++.|++++|++++ ++|+||+.|++|++|++....   ......+.+|...|.+++|+++  +++|+||+.|++|
T Consensus       377 ~l~~H~~~V~~v~~~~~~~~~l~s~s~D~~i~~W~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~--g~~l~sgs~Dg~v  454 (694)
T 3dm0_A          377 TMRAHTDMVTAIATPIDNADIIVSASRDKSIILWKLTKDDKAYGVAQRRLTGHSHFVEDVVLSSD--GQFALSGSWDGEL  454 (694)
T ss_dssp             EEECCSSCEEEEECCTTCCSEEEEEETTSEEEEEECCCSTTCSCEEEEEEECCSSCEEEEEECTT--SSEEEEEETTSEE
T ss_pred             hcccCCceeEEEEecCCCCCEEEEEeCCCcEEEEEccCCCcccccccceecCCCCcEEEEEECCC--CCEEEEEeCCCcE
Confidence            466999999999999875 799999999999999986432   2345678899999999999864  8999999999999


Q ss_pred             EEEEcCCCCceeEEEEecCCCCCeeEEEecCCCCCcEEEEEecCCcEEEEEecCCCCeeeeeecccCCCCeEEEEeCCCC
Q 022111           82 IIWKEGNQNDWTQAHTFNDHKSSVNSIAWAPHELGLSLACGSSDGNISVFTATADGGWDTTRIDQAHPVGVTSVSWAPAM  161 (302)
Q Consensus        82 ~iwd~~~~~~~~~~~~~~~h~~~i~~l~~~pd~~~~~l~sg~~d~~v~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~  161 (302)
                      +|||+.++   .....+.+|...|.+++|+|+  +.+|++|+.|++|++||..............+|...|.+++|+|+.
T Consensus       455 ~vwd~~~~---~~~~~~~~h~~~v~~~~~s~~--~~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~  529 (694)
T 3dm0_A          455 RLWDLAAG---VSTRRFVGHTKDVLSVAFSLD--NRQIVSASRDRTIKLWNTLGECKYTISEGGEGHRDWVSCVRFSPNT  529 (694)
T ss_dssp             EEEETTTT---EEEEEEECCSSCEEEEEECTT--SSCEEEEETTSCEEEECTTSCEEEEECSSTTSCSSCEEEEEECSCS
T ss_pred             EEEECCCC---cceeEEeCCCCCEEEEEEeCC--CCEEEEEeCCCEEEEEECCCCcceeeccCCCCCCCcEEEEEEeCCC
Confidence            99999765   356778899999999999998  6689999999999999975332222222223688889999999864


Q ss_pred             CCCceeecccCCCceeEEEeeCCCcEEEEEEecCccccccccccccCCCceeEEEeeCCCCCCccEEEEEecCCeEEEEE
Q 022111          162 APGALVGLGLLDPVQKLASCGCDNTVKVWKMYNGIWKMDCFPALQMHSDWVRSVAWAPNLGLPKSTIASASQDGTVVIWT  241 (302)
Q Consensus       162 ~~~~~~~~~~~~~~~~l~s~~~D~~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~l~s~s~D~~i~iwd  241 (302)
                      .            ...|++|+.|++|++||+++.    .+...+.+|.+.|++++|+|++    ++|++|+.|++|++||
T Consensus       530 ~------------~~~l~s~s~d~~v~vwd~~~~----~~~~~~~~h~~~v~~v~~spdg----~~l~sg~~Dg~i~iwd  589 (694)
T 3dm0_A          530 L------------QPTIVSASWDKTVKVWNLSNC----KLRSTLAGHTGYVSTVAVSPDG----SLCASGGKDGVVLLWD  589 (694)
T ss_dssp             S------------SCEEEEEETTSCEEEEETTTC----CEEEEECCCSSCEEEEEECTTS----SEEEEEETTSBCEEEE
T ss_pred             C------------cceEEEEeCCCeEEEEECCCC----cEEEEEcCCCCCEEEEEEeCCC----CEEEEEeCCCeEEEEE
Confidence            1            257999999999999999865    3456778999999999999985    7899999999999999


Q ss_pred             eccCCcceeeeeeccCCCcEEEEEEccCCCEEEEecCCceEEeeecCCce
Q 022111          242 CAKEGEQWEGRVLKDFKTPVWSVSWSLTGNLLAVADANNVTLWKEAVDGE  291 (302)
Q Consensus       242 ~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~la~~~~d~i~~w~~~~~~~  291 (302)
                      ++....    .........|.+++|+|++.+|+++++++|++|+......
T Consensus       590 ~~~~~~----~~~~~~~~~v~~~~~sp~~~~l~~~~~~~i~iwd~~~~~~  635 (694)
T 3dm0_A          590 LAEGKK----LYSLEANSVIHALCFSPNRYWLCAATEHGIKIWDLESKSI  635 (694)
T ss_dssp             TTTTEE----EECCBCSSCEEEEEECSSSSEEEEEETTEEEEEETTTTEE
T ss_pred             CCCCce----EEEecCCCcEEEEEEcCCCcEEEEEcCCCEEEEECCCCCC
Confidence            976421    1112345679999999999999998877999999865433

>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*

Probab=100.00  E-value=1.1e-37  Score=281.66  Aligned_cols=257  Identities=14%  Similarity=0.170  Sum_probs=195.0

Q ss_pred             ccccccceeEEEEcc-CCCEEEEeeCCCcEEEEeecCCCceEEEEecCcccCeEEEEeeCCCCCCEEEEEeCCCeEEEEE
Q 022111            7 ETGHEDTVHDVAMDF-YGKRLATASSDSSIKIIGLSNSASQHLATLKGHRGPVWQVAWAHPKFGSILASCSYDGQVIIWK   85 (302)
Q Consensus         7 ~~~h~~~v~~~~~s~-~~~~l~s~~~d~~v~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~s~D~~i~iwd   85 (302)
                      ..+|...|++++|+| ++++||+|+.||+|+|||+..........+.+|.+.|++|+|+|. ++++|+||+.|++|++||
T Consensus       115 ~~~~~~~V~~l~~~P~~~~~lasGs~dg~i~lWd~~~~~~~~~~~~~gH~~~V~~l~f~p~-~~~~l~s~s~D~~v~iwd  193 (435)
T 4e54_B          115 AAPFDRRATSLAWHPTHPSTVAVGSKGGDIMLWNFGIKDKPTFIKGIGAGGSITGLKFNPL-NTNQFYASSMEGTTRLQD  193 (435)
T ss_dssp             EEECSSCEEEEEECSSCTTCEEEEETTSCEEEECSSCCSCCEEECCCSSSCCCCEEEECSS-CTTEEEEECSSSCEEEEE
T ss_pred             CCCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEEECCCCCceeEEEccCCCCCEEEEEEeCC-CCCEEEEEeCCCEEEEee
Confidence            447888999999998 567999999999999999976555556667899999999999753 478999999999999999


Q ss_pred             cCCCCceeEEEEecCCCCCeeEEEecCCCCCcEEEEEecCCcEEEEEecCCCCeeeeeecccCCCCeEEEEeCCCCCCCc
Q 022111           86 EGNQNDWTQAHTFNDHKSSVNSIAWAPHELGLSLACGSSDGNISVFTATADGGWDTTRIDQAHPVGVTSVSWAPAMAPGA  165 (302)
Q Consensus        86 ~~~~~~~~~~~~~~~h~~~i~~l~~~pd~~~~~l~sg~~d~~v~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~  165 (302)
                      ++... .........+...+.+++|+|+  +.+|++|+.|+.|++||++..   ....+ .+|...|.+++|+|..    
T Consensus       194 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~--~~~l~~g~~dg~i~~wd~~~~---~~~~~-~~h~~~v~~v~~~p~~----  262 (435)
T 4e54_B          194 FKGNI-LRVFASSDTINIWFCSLDVSAS--SRMVVTGDNVGNVILLNMDGK---ELWNL-RMHKKKVTHVALNPCC----  262 (435)
T ss_dssp             TTSCE-EEEEECCSSCSCCCCCEEEETT--TTEEEEECSSSBEEEEESSSC---BCCCS-BCCSSCEEEEEECTTC----
T ss_pred             ccCCc-eeEEeccCCCCccEEEEEECCC--CCEEEEEeCCCcEeeeccCcc---eeEEE-ecccceEEeeeecCCC----
Confidence            97542 1122222234556789999998  679999999999999998632   22233 3789999999999864    


Q ss_pred             eeecccCCCceeEEEeeCCCcEEEEEEecCccccccccccccCCCceeEEEeeCCCCCCccEEEEEecCCeEEEEEeccC
Q 022111          166 LVGLGLLDPVQKLASCGCDNTVKVWKMYNGIWKMDCFPALQMHSDWVRSVAWAPNLGLPKSTIASASQDGTVVIWTCAKE  245 (302)
Q Consensus       166 ~~~~~~~~~~~~l~s~~~D~~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~l~s~s~D~~i~iwd~~~~  245 (302)
                               ..+|++|+.|++|+|||+++.... ..+....+|...|++++|+|++    .+|++++.|+.|+|||++..
T Consensus       263 ---------~~~~~s~s~d~~v~iwd~~~~~~~-~~~~~~~~h~~~v~~~~~spdg----~~l~s~~~D~~i~iwd~~~~  328 (435)
T 4e54_B          263 ---------DWFLATASVDQTVKIWDLRQVRGK-ASFLYSLPHRHPVNAACFSPDG----ARLLTTDQKSEIRVYSASQW  328 (435)
T ss_dssp             ---------SSEEEEEETTSBCCEEETTTCCSS-SCCSBCCBCSSCEEECCBCTTS----SEEEEEESSSCEEEEESSSS
T ss_pred             ---------ceEEEEecCcceeeEEeccccccc-ceEEEeeeccccccceeECCCC----CeeEEEcCCCEEEEEECCCC
Confidence                     357899999999999999865322 1223446899999999999985    78999999999999998642


Q ss_pred             Ccce--------------------e--------------------------e------------eeeccCCCcEEEE-EE
Q 022111          246 GEQW--------------------E--------------------------G------------RVLKDFKTPVWSV-SW  266 (302)
Q Consensus       246 ~~~~--------------------~--------------------------~------------~~~~~~~~~v~~~-~~  266 (302)
                      ....                    .                          .            .+...+...|.++ +|
T Consensus       329 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~i~iwd~~~g~~~~~l~~~~~~~v~s~~~f  408 (435)
T 4e54_B          329 DCPLGLIPHPHRHFQHLTPIKAAWHPRYNLIVVGRYPDPNFKSCTPYELRTIDVFDGNSGKMMCQLYDPESSGISSLNEF  408 (435)
T ss_dssp             SSEEEECCCCCCCCSSSCCCBCEECSSSSCEEEECCCCTTSCCSSTTCCCCEEEECSSSCCEEEEECCSSCCCCCCEEEE
T ss_pred             ccceEEecccccccccceeEEEEEcCCCCEEEEEEcCCCCeEEEEecCCCEEEEEECCCCcEEEEEeCCCCCcEEEEEEE
Confidence            1000                    0                          0            0001223345555 79


Q ss_pred             ccCCCEEEEecCCceEEeeecCC
Q 022111          267 SLTGNLLAVADANNVTLWKEAVD  289 (302)
Q Consensus       267 spdg~~la~~~~d~i~~w~~~~~  289 (302)
                      ||+|++||+|++++|+||+..+.
T Consensus       409 spdg~~lasg~d~~i~iW~~~~g  431 (435)
T 4e54_B          409 NPMGDTLASAMGYHILIWSQQEA  431 (435)
T ss_dssp             CTTSSCEEEECSSEEEECCCC--
T ss_pred             CCCCCEEEEEcCCcEEEEECCcC
Confidence            99999999998669999997643

>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}

Probab=100.00  E-value=3.7e-37  Score=271.43  Aligned_cols=252  Identities=18%  Similarity=0.225  Sum_probs=191.8

Q ss_pred             cccccceeEEEEccCCCEEEEeeC------CCcEEEEeecCCC--ceEEEEecCcccCeEEEEeeCCCCCCEEEEEeCCC
Q 022111            8 TGHEDTVHDVAMDFYGKRLATASS------DSSIKIIGLSNSA--SQHLATLKGHRGPVWQVAWAHPKFGSILASCSYDG   79 (302)
Q Consensus         8 ~~h~~~v~~~~~s~~~~~l~s~~~------d~~v~lw~~~~~~--~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~s~D~   79 (302)
                      ..|+..|++++|+|||++||+|+.      |++|++|+.....  ........+|...|.+++|+++  + .+++++.|+
T Consensus        39 ~~H~~~V~~v~fSpDG~~las~s~d~~~~wd~~v~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~s~d--~-~~l~~s~dg  115 (357)
T 4g56_B           39 ACMEVQIGAVRYRRDGALLLAASSLSSRTWGGSIWVFKDPEGAPNESLCTAGVQTEAGVTDVAWVSE--K-GILVASDSG  115 (357)
T ss_dssp             -CCCSEEEEEEECSSSCEEEEEECSSSSSCCEEEEEESSCC---CGGGCSEEEECSSCEEEEEEETT--T-EEEEEETTS
T ss_pred             ccccCCEEEEEECCCCCEEEEEcCCCCccccCeEEEEECCCCCcceeEecccCCCCCCEEEEEEcCC--C-CEEEEECCC
Confidence            469999999999999999999997      6778888864322  1122344578899999999874  4 566789999


Q ss_pred             eEEEEEcCCCCce-eEEEEecCCCCCeeEEEecCCCCCcEEEEEecCCcEEEEEecCCCCeeeeeecccCCCCeEEEEeC
Q 022111           80 QVIIWKEGNQNDW-TQAHTFNDHKSSVNSIAWAPHELGLSLACGSSDGNISVFTATADGGWDTTRIDQAHPVGVTSVSWA  158 (302)
Q Consensus        80 ~i~iwd~~~~~~~-~~~~~~~~h~~~i~~l~~~pd~~~~~l~sg~~d~~v~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~  158 (302)
                      +|+|||+.++... .......+|...|.+++|+|+  +.+|++|+.|+.|++||..+..  ....+ .+|...|.+++|+
T Consensus       116 ~v~lWd~~~~~~~~~~~~~~~~h~~~V~~v~~spd--g~~l~sgs~dg~v~iwd~~~~~--~~~~~-~~h~~~v~~v~~s  190 (357)
T 4g56_B          116 AVELWEILEKESLLVNKFAKYEHDDIVKTLSVFSD--GTQAVSGGKDFSVKVWDLSQKA--VLKSY-NAHSSEVNCVAAC  190 (357)
T ss_dssp             CEEEC--------CCCCEEECCCSSCEEEEEECSS--SSEEEEEETTSCEEEEETTTTE--EEEEE-CCCSSCEEEEEEC
T ss_pred             EEEEeeccccceeEEEeeccCCCCCCEEEEEECCC--CCEEEEEeCCCeEEEEECCCCc--EEEEE-cCCCCCEEEEEEc
Confidence            9999998765321 112234579999999999998  6799999999999999987542  22344 3789999999999


Q ss_pred             CCCCCCceeecccCCCceeEEEeeCCCcEEEEEEecCccccccccccccCCCceeEEEeeCCCCCCccEEEEEecCCeEE
Q 022111          159 PAMAPGALVGLGLLDPVQKLASCGCDNTVKVWKMYNGIWKMDCFPALQMHSDWVRSVAWAPNLGLPKSTIASASQDGTVV  238 (302)
Q Consensus       159 ~~~~~~~~~~~~~~~~~~~l~s~~~D~~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~l~s~s~D~~i~  238 (302)
                      |+.             ...+++++.|++|+|||++++...  ....+..|...|.+++|+|++   +..|++|+.|+.|+
T Consensus       191 ~~~-------------~~~~~s~~~dg~v~~wd~~~~~~~--~~~~~~~~~~~v~~v~~sp~~---~~~la~g~~d~~i~  252 (357)
T 4g56_B          191 PGK-------------DTIFLSCGEDGRILLWDTRKPKPA--TRIDFCASDTIPTSVTWHPEK---DDTFACGDETGNVS  252 (357)
T ss_dssp             TTC-------------SSCEEEEETTSCEEECCTTSSSCB--CBCCCTTCCSCEEEEEECTTS---TTEEEEEESSSCEE
T ss_pred             cCC-------------CceeeeeccCCceEEEECCCCcee--eeeeeccccccccchhhhhcc---cceEEEeeccccee
Confidence            864             257899999999999999876321  112345678889999999985   47899999999999


Q ss_pred             EEEeccCCcceeeeeeccCCCcEEEEEEccCC-CEEEEecCC-ceEEeeecC
Q 022111          239 IWTCAKEGEQWEGRVLKDFKTPVWSVSWSLTG-NLLAVADAN-NVTLWKEAV  288 (302)
Q Consensus       239 iwd~~~~~~~~~~~~~~~~~~~v~~~~~spdg-~~la~~~~d-~i~~w~~~~  288 (302)
                      +||++....   ...+..+...|.+++|+|++ ++||+++.| .|+|||...
T Consensus       253 ~wd~~~~~~---~~~~~~~~~~v~~l~~sp~~~~~lasgs~D~~i~iwd~~~  301 (357)
T 4g56_B          253 LVNIKNPDS---AQTSAVHSQNITGLAYSYHSSPFLASISEDCTVAVLDADF  301 (357)
T ss_dssp             EEESSCGGG---CEEECCCSSCEEEEEECSSSSCCEEEEETTSCEEEECTTS
T ss_pred             EEECCCCcE---eEEEeccceeEEEEEEcCCCCCEEEEEeCCCEEEEEECCC
Confidence            999976432   23446778899999999987 678999888 799999764

>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R

Probab=100.00  E-value=2.3e-36  Score=264.71  Aligned_cols=250  Identities=18%  Similarity=0.256  Sum_probs=193.0

Q ss_pred             cccccccceeEEEEccCCCEEEEeeCCCcEEEEeecCCCceEEEEecCcccCeEEEEeeCCCCCCEEEEEeCCCeEEEEE
Q 022111            6 IETGHEDTVHDVAMDFYGKRLATASSDSSIKIIGLSNSASQHLATLKGHRGPVWQVAWAHPKFGSILASCSYDGQVIIWK   85 (302)
Q Consensus         6 ~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~s~D~~i~iwd   85 (302)
                      .+.+|...|++++|+|++.+|++|+.|++|++||+...  +.+..+.+|...|.+++|+++  +++|++++.|++|++||
T Consensus        71 ~l~~h~~~V~~~~~~~~~~~l~s~s~D~~v~lwd~~~~--~~~~~~~~h~~~v~~v~~sp~--~~~l~s~~~d~~i~~wd  146 (343)
T 2xzm_R           71 ALTGHNHFVSDLALSQENCFAISSSWDKTLRLWDLRTG--TTYKRFVGHQSEVYSVAFSPD--NRQILSAGAEREIKLWN  146 (343)
T ss_dssp             EECCCSSCEEEEEECSSTTEEEEEETTSEEEEEETTSS--CEEEEEECCCSCEEEEEECSS--TTEEEEEETTSCEEEEE
T ss_pred             hhccCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCC--cEEEEEcCCCCcEEEEEECCC--CCEEEEEcCCCEEEEEe
Confidence            46789999999999999999999999999999998653  466788899999999999864  78999999999999999


Q ss_pred             cCCCCceeEEEEecCCCCCeeEEEecCCCC--------CcEEEEEecCCcEEEEEecCCCCeeeeeecccCCCCeEEEEe
Q 022111           86 EGNQNDWTQAHTFNDHKSSVNSIAWAPHEL--------GLSLACGSSDGNISVFTATADGGWDTTRIDQAHPVGVTSVSW  157 (302)
Q Consensus        86 ~~~~~~~~~~~~~~~h~~~i~~l~~~pd~~--------~~~l~sg~~d~~v~~~~~~~~~~~~~~~~~~~h~~~v~~~~~  157 (302)
                      +.... .........|...|.+++|+|+..        +.++++++.|+.|++||..  . .....+ .+|...|.+++|
T Consensus       147 ~~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~--~-~~~~~~-~~h~~~v~~~~~  221 (343)
T 2xzm_R          147 ILGEC-KFSSAEKENHSDWVSCVRYSPIMKSANKVQPFAPYFASVGWDGRLKVWNTN--F-QIRYTF-KAHESNVNHLSI  221 (343)
T ss_dssp             SSSCE-EEECCTTTSCSSCEEEEEECCCCCSCSCCCSSCCEEEEEETTSEEEEEETT--T-EEEEEE-ECCSSCEEEEEE
T ss_pred             ccCCc-eeeeecccCCCceeeeeeeccccccccccCCCCCEEEEEcCCCEEEEEcCC--C-ceeEEE-cCccccceEEEE
Confidence            86421 111112236889999999999731        1589999999999999943  1 122233 378899999999


Q ss_pred             CCCCCCCceeecccCCCceeEEEeeCCCcEEEEEEecCccccccccccccCCCceeEEEeeCCCCCCccEEEEEecCCeE
Q 022111          158 APAMAPGALVGLGLLDPVQKLASCGCDNTVKVWKMYNGIWKMDCFPALQMHSDWVRSVAWAPNLGLPKSTIASASQDGTV  237 (302)
Q Consensus       158 ~~~~~~~~~~~~~~~~~~~~l~s~~~D~~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~l~s~s~D~~i  237 (302)
                      +|++              ++|++|+.|+.|++||+.....   ....+ .+...|.+++|+|++    .++ +++.|+.|
T Consensus       222 s~~g--------------~~l~sgs~dg~v~iwd~~~~~~---~~~~~-~~~~~v~~v~~sp~~----~~l-a~~~d~~v  278 (343)
T 2xzm_R          222 SPNG--------------KYIATGGKDKKLLIWDILNLTY---PQREF-DAGSTINQIAFNPKL----QWV-AVGTDQGV  278 (343)
T ss_dssp             CTTS--------------SEEEEEETTCEEEEEESSCCSS---CSEEE-ECSSCEEEEEECSSS----CEE-EEEESSCE
T ss_pred             CCCC--------------CEEEEEcCCCeEEEEECCCCcc---cceee-cCCCcEEEEEECCCC----CEE-EEECCCCE
Confidence            9864              7899999999999999854321   11122 345679999999985    445 56678889


Q ss_pred             EEEEeccCCcceeeee----------eccCCCcEEEEEEccCCCEEEEecCC-ceEEeeec
Q 022111          238 VIWTCAKEGEQWEGRV----------LKDFKTPVWSVSWSLTGNLLAVADAN-NVTLWKEA  287 (302)
Q Consensus       238 ~iwd~~~~~~~~~~~~----------~~~~~~~v~~~~~spdg~~la~~~~d-~i~~w~~~  287 (302)
                      ++||+..........+          ..++...|.+++|+|+|++|++|+.| .|++|+..
T Consensus       279 ~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~sg~~Dg~v~~w~~~  339 (343)
T 2xzm_R          279 KIFNLMTQSKAPVCTIEAEPITKAEGQKGKNPQCTSLAWNALGKKLFAGFTDGVIRTFSFE  339 (343)
T ss_dssp             EEEESSSCCSCSEEECCCCSGGGBTTBCCSCCCEEEEEECSSSCCEEEEETTSEEEEEEEE
T ss_pred             EEEEeCCCCCCceEEeecCcchhhhhhcCCCCceEEEEECCCCCeEEEecCCceEEEEEEE
Confidence            9999875322110011          12466779999999999999999988 79999974

>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1

Probab=100.00  E-value=2.4e-36  Score=269.49  Aligned_cols=247  Identities=26%  Similarity=0.338  Sum_probs=197.6

Q ss_pred             ccceeEEEEccCCCEEEEeeCCCcEEEEeecCCCceEEEEecCcccCeEEEEeeCCCCCCEEEEEeCCCeEEEEEcCCCC
Q 022111           11 EDTVHDVAMDFYGKRLATASSDSSIKIIGLSNSASQHLATLKGHRGPVWQVAWAHPKFGSILASCSYDGQVIIWKEGNQN   90 (302)
Q Consensus        11 ~~~v~~~~~s~~~~~l~s~~~d~~v~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~s~D~~i~iwd~~~~~   90 (302)
                      ...|++++|+|++++||+|+.|++|+|||+..  .+.+..+.+|...|++++|+++  +++|++++.|++|++||++++.
T Consensus       123 ~~~v~~v~~s~dg~~l~s~~~d~~i~iwd~~~--~~~~~~~~~h~~~v~~~~~~p~--~~~l~s~s~d~~v~iwd~~~~~  198 (393)
T 1erj_A          123 DLYIRSVCFSPDGKFLATGAEDRLIRIWDIEN--RKIVMILQGHEQDIYSLDYFPS--GDKLVSGSGDRTVRIWDLRTGQ  198 (393)
T ss_dssp             CCBEEEEEECTTSSEEEEEETTSCEEEEETTT--TEEEEEECCCSSCEEEEEECTT--SSEEEEEETTSEEEEEETTTTE
T ss_pred             ceeEEEEEECCCCCEEEEEcCCCeEEEEECCC--CcEEEEEccCCCCEEEEEEcCC--CCEEEEecCCCcEEEEECCCCe
Confidence            34599999999999999999999999999865  4567788999999999999864  7899999999999999997753


Q ss_pred             ceeEEEEecCCCCCeeEEEecCCCCCcEEEEEecCCcEEEEEecCCCCeeee----eecccCCCCeEEEEeCCCCCCCce
Q 022111           91 DWTQAHTFNDHKSSVNSIAWAPHELGLSLACGSSDGNISVFTATADGGWDTT----RIDQAHPVGVTSVSWAPAMAPGAL  166 (302)
Q Consensus        91 ~~~~~~~~~~h~~~i~~l~~~pd~~~~~l~sg~~d~~v~~~~~~~~~~~~~~----~~~~~h~~~v~~~~~~~~~~~~~~  166 (302)
                         ....+. +...+.+++|+|.. +.+|++|+.|+.|++||..........    ....+|...|.+++|+|++     
T Consensus       199 ---~~~~~~-~~~~v~~~~~~~~~-~~~l~~~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~g-----  268 (393)
T 1erj_A          199 ---CSLTLS-IEDGVTTVAVSPGD-GKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDG-----  268 (393)
T ss_dssp             ---EEEEEE-CSSCEEEEEECSTT-CCEEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTTS-----
T ss_pred             ---eEEEEE-cCCCcEEEEEECCC-CCEEEEEcCCCcEEEEECCCCcEEEeecccccCCCCCCCCEEEEEECCCC-----
Confidence               344444 66789999999942 679999999999999998754322111    0113688899999999864     


Q ss_pred             eecccCCCceeEEEeeCCCcEEEEEEecCcc--------ccccccccccCCCceeEEEeeCCCCCCccEEEEEecCCeEE
Q 022111          167 VGLGLLDPVQKLASCGCDNTVKVWKMYNGIW--------KMDCFPALQMHSDWVRSVAWAPNLGLPKSTIASASQDGTVV  238 (302)
Q Consensus       167 ~~~~~~~~~~~l~s~~~D~~v~iwd~~~~~~--------~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~l~s~s~D~~i~  238 (302)
                               .+|++|+.|++|++||+++...        ...+...+.+|.+.|.+++|+|++    .+|++|+.|+.|+
T Consensus       269 ---------~~l~s~s~d~~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~----~~l~sgs~D~~v~  335 (393)
T 1erj_A          269 ---------QSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQND----EYILSGSKDRGVL  335 (393)
T ss_dssp             ---------SEEEEEETTSEEEEEEC---------------CEEEEEECCSSCEEEEEECGGG----CEEEEEETTSEEE
T ss_pred             ---------CEEEEEeCCCEEEEEECCCCCCcccccCCCCCcceEEEecccCcEEEEEECCCC----CEEEEEeCCCeEE
Confidence                     7899999999999999875321        112344677899999999999985    7899999999999


Q ss_pred             EEEeccCCcceeeeeeccCCCcEEEEEEcc------CCCEEEEecCC-ceEEeeec
Q 022111          239 IWTCAKEGEQWEGRVLKDFKTPVWSVSWSL------TGNLLAVADAN-NVTLWKEA  287 (302)
Q Consensus       239 iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp------dg~~la~~~~d-~i~~w~~~  287 (302)
                      +||++....   ...+.+|...|.+++|+|      ++++|++|+.| .|++|+..
T Consensus       336 iwd~~~~~~---~~~l~~h~~~v~~v~~~~~~~~~p~~~~l~sgs~Dg~i~iW~~~  388 (393)
T 1erj_A          336 FWDKKSGNP---LLMLQGHRNSVISVAVANGSSLGPEYNVFATGSGDCKARIWKYK  388 (393)
T ss_dssp             EEETTTCCE---EEEEECCSSCEEEEEECSSCTTCTTCEEEEEEETTSEEEEEEEE
T ss_pred             EEECCCCeE---EEEECCCCCCEEEEEecCCcCcCCCCCEEEEECCCCcEEECccc
Confidence            999876431   234567888999999886      68999999998 79999974

>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...

Probab=100.00  E-value=5.1e-36  Score=258.57  Aligned_cols=250  Identities=23%  Similarity=0.357  Sum_probs=200.4

Q ss_pred             ccccccccceeEEEEccCCCEEEEeeCCCcEEEEeecCCCceEEEEecCcccCeEEEEeeCCCCCCEEEEEeCCCeEEEE
Q 022111            5 KIETGHEDTVHDVAMDFYGKRLATASSDSSIKIIGLSNSASQHLATLKGHRGPVWQVAWAHPKFGSILASCSYDGQVIIW   84 (302)
Q Consensus         5 ~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~s~D~~i~iw   84 (302)
                      .++.+|.+.|++++|+|++++|++|+.|++|++|+....  +....+.+|...|.+++|+++  +++|++++.|+.|++|
T Consensus        17 ~~~~gh~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~--~~~~~~~~h~~~v~~~~~~~~--~~~l~s~~~d~~i~vw   92 (312)
T 4ery_A           17 FTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDG--KFEKTISGHKLGISDVAWSSD--SNLLVSASDDKTLKIW   92 (312)
T ss_dssp             EEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTC--CEEEEECCCSSCEEEEEECTT--SSEEEEEETTSEEEEE
T ss_pred             EEEcccCCcEEEEEECCCCCEEEEeeCCCeEEEEeCCCc--ccchhhccCCCceEEEEEcCC--CCEEEEECCCCEEEEE
Confidence            346799999999999999999999999999999998653  456678899999999999864  7999999999999999


Q ss_pred             EcCCCCceeEEEEecCCCCCeeEEEecCCCCCcEEEEEecCCcEEEEEecCCCCeeeeeecccCCCCeEEEEeCCCCCCC
Q 022111           85 KEGNQNDWTQAHTFNDHKSSVNSIAWAPHELGLSLACGSSDGNISVFTATADGGWDTTRIDQAHPVGVTSVSWAPAMAPG  164 (302)
Q Consensus        85 d~~~~~~~~~~~~~~~h~~~i~~l~~~pd~~~~~l~sg~~d~~v~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~  164 (302)
                      |+++.   .....+.+|...|.+++|+|+  +.+|++|+.|+.|++||++....  ...+ ..|...+.++.|+|++   
T Consensus        93 d~~~~---~~~~~~~~~~~~v~~~~~~~~--~~~l~s~~~d~~i~iwd~~~~~~--~~~~-~~~~~~v~~~~~~~~~---  161 (312)
T 4ery_A           93 DVSSG---KCLKTLKGHSNYVFCCNFNPQ--SNLIVSGSFDESVRIWDVKTGKC--LKTL-PAHSDPVSAVHFNRDG---  161 (312)
T ss_dssp             ETTTC---CEEEEEECCSSCEEEEEECSS--SSEEEEEETTSCEEEEETTTCCE--EEEE-CCCSSCEEEEEECTTS---
T ss_pred             ECCCC---cEEEEEcCCCCCEEEEEEcCC--CCEEEEEeCCCcEEEEECCCCEE--EEEe-cCCCCcEEEEEEcCCC---
Confidence            99775   356778889999999999998  66999999999999999875432  2333 3688899999999863   


Q ss_pred             ceeecccCCCceeEEEeeCCCcEEEEEEecCcccccccccc-ccCCCceeEEEeeCCCCCCccEEEEEecCCeEEEEEec
Q 022111          165 ALVGLGLLDPVQKLASCGCDNTVKVWKMYNGIWKMDCFPAL-QMHSDWVRSVAWAPNLGLPKSTIASASQDGTVVIWTCA  243 (302)
Q Consensus       165 ~~~~~~~~~~~~~l~s~~~D~~v~iwd~~~~~~~~~~~~~~-~~h~~~v~~v~~~p~~~~~~~~l~s~s~D~~i~iwd~~  243 (302)
                                 .+|++++.|+.|++||++++.    .+..+ ..|...+.+++|+|++    .+|++++.|+.|++||++
T Consensus       162 -----------~~l~~~~~d~~i~~wd~~~~~----~~~~~~~~~~~~~~~~~~~~~~----~~l~~~~~d~~i~iwd~~  222 (312)
T 4ery_A          162 -----------SLIVSSSYDGLCRIWDTASGQ----CLKTLIDDDNPPVSFVKFSPNG----KYILAATLDNTLKLWDYS  222 (312)
T ss_dssp             -----------SEEEEEETTSCEEEEETTTCC----EEEEECCSSCCCEEEEEECTTS----SEEEEEETTTEEEEEETT
T ss_pred             -----------CEEEEEeCCCcEEEEECCCCc----eeeEEeccCCCceEEEEECCCC----CEEEEEcCCCeEEEEECC
Confidence                       789999999999999998753    22222 3567789999999985    789999999999999997


Q ss_pred             cCCcceeeeeeccCCCcE--EEEEEc-cCCCEEEEecCC-ceEEeeecCCce
Q 022111          244 KEGEQWEGRVLKDFKTPV--WSVSWS-LTGNLLAVADAN-NVTLWKEAVDGE  291 (302)
Q Consensus       244 ~~~~~~~~~~~~~~~~~v--~~~~~s-pdg~~la~~~~d-~i~~w~~~~~~~  291 (302)
                      ....   ......+....  ....|+ +++++|++++.| .|++|+......
T Consensus       223 ~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~  271 (312)
T 4ery_A          223 KGKC---LKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEI  271 (312)
T ss_dssp             TTEE---EEEECSSCCSSSCCCEEEECSSSCEEEECCTTSCEEEEETTTCCE
T ss_pred             CCcE---EEEEEecCCceEEEEEEEEeCCCcEEEEECCCCEEEEEECCCchh
Confidence            5421   12223333322  223444 678999999988 799999865443

>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1

Probab=100.00  E-value=3.2e-36  Score=268.70  Aligned_cols=252  Identities=21%  Similarity=0.305  Sum_probs=195.1

Q ss_pred             ccccceeEEEEccCCCEEEEeeCCCcEEEEeecCCCceEEEEecCcc------------------cCeEEEEeeCCCCCC
Q 022111            9 GHEDTVHDVAMDFYGKRLATASSDSSIKIIGLSNSASQHLATLKGHR------------------GPVWQVAWAHPKFGS   70 (302)
Q Consensus         9 ~h~~~v~~~~~s~~~~~l~s~~~d~~v~lw~~~~~~~~~~~~~~~h~------------------~~v~~v~~~~~~~~~   70 (302)
                      +|...|.+++|+|||++||+|+ |+++++|++..+  +.+..+.+|.                  ..|++++|+++  ++
T Consensus        62 ~h~~~V~~v~fspdg~~la~g~-~~~v~i~~~~~g--~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~d--g~  136 (393)
T 1erj_A           62 DHTSVVCCVKFSNDGEYLATGC-NKTTQVYRVSDG--SLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPD--GK  136 (393)
T ss_dssp             ECSSCCCEEEECTTSSEEEEEC-BSCEEEEETTTC--CEEEEECC-----------------CCCCBEEEEEECTT--SS
T ss_pred             CCCCEEEEEEECCCCCEEEEEc-CCcEEEEEecCC--CEEEEecCccccccccccccccccCCCceeEEEEEECCC--CC
Confidence            6999999999999999999876 789999998653  3444554443                  24899999864  89


Q ss_pred             EEEEEeCCCeEEEEEcCCCCceeEEEEecCCCCCeeEEEecCCCCCcEEEEEecCCcEEEEEecCCCCeeeeeecccCCC
Q 022111           71 ILASCSYDGQVIIWKEGNQNDWTQAHTFNDHKSSVNSIAWAPHELGLSLACGSSDGNISVFTATADGGWDTTRIDQAHPV  150 (302)
Q Consensus        71 ~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~h~~~i~~l~~~pd~~~~~l~sg~~d~~v~~~~~~~~~~~~~~~~~~~h~~  150 (302)
                      +|++|+.|++|++||+++.   .....+.+|...|.+++|+|+  +.+|++|+.|++|++||++....  ...+  .+..
T Consensus       137 ~l~s~~~d~~i~iwd~~~~---~~~~~~~~h~~~v~~~~~~p~--~~~l~s~s~d~~v~iwd~~~~~~--~~~~--~~~~  207 (393)
T 1erj_A          137 FLATGAEDRLIRIWDIENR---KIVMILQGHEQDIYSLDYFPS--GDKLVSGSGDRTVRIWDLRTGQC--SLTL--SIED  207 (393)
T ss_dssp             EEEEEETTSCEEEEETTTT---EEEEEECCCSSCEEEEEECTT--SSEEEEEETTSEEEEEETTTTEE--EEEE--ECSS
T ss_pred             EEEEEcCCCeEEEEECCCC---cEEEEEccCCCCEEEEEEcCC--CCEEEEecCCCcEEEEECCCCee--EEEE--EcCC
Confidence            9999999999999999765   456778899999999999998  66899999999999999875421  1222  3556


Q ss_pred             CeEEEEeCCCCCCCceeecccCCCceeEEEeeCCCcEEEEEEecCcccccc---ccccccCCCceeEEEeeCCCCCCccE
Q 022111          151 GVTSVSWAPAMAPGALVGLGLLDPVQKLASCGCDNTVKVWKMYNGIWKMDC---FPALQMHSDWVRSVAWAPNLGLPKST  227 (302)
Q Consensus       151 ~v~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~D~~v~iwd~~~~~~~~~~---~~~~~~h~~~v~~v~~~p~~~~~~~~  227 (302)
                      .+.+++|+|..             +.+|++|+.|+.|++||+.++......   .....+|...|.+++|+|++    ..
T Consensus       208 ~v~~~~~~~~~-------------~~~l~~~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~g----~~  270 (393)
T 1erj_A          208 GVTTVAVSPGD-------------GKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDG----QS  270 (393)
T ss_dssp             CEEEEEECSTT-------------CCEEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTTS----SE
T ss_pred             CcEEEEEECCC-------------CCEEEEEcCCCcEEEEECCCCcEEEeecccccCCCCCCCCEEEEEECCCC----CE
Confidence            78999999832             478999999999999998765321110   11236899999999999985    78


Q ss_pred             EEEEecCCeEEEEEeccCCcc---------eeeeeeccCCCcEEEEEEccCCCEEEEecCC-ceEEeeecCCce
Q 022111          228 IASASQDGTVVIWTCAKEGEQ---------WEGRVLKDFKTPVWSVSWSLTGNLLAVADAN-NVTLWKEAVDGE  291 (302)
Q Consensus       228 l~s~s~D~~i~iwd~~~~~~~---------~~~~~~~~~~~~v~~~~~spdg~~la~~~~d-~i~~w~~~~~~~  291 (302)
                      |++|+.|++|++||++.....         .......+|...|.+++|+|++++|++++.| .|++|+......
T Consensus       271 l~s~s~d~~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sgs~D~~v~iwd~~~~~~  344 (393)
T 1erj_A          271 VVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNP  344 (393)
T ss_dssp             EEEEETTSEEEEEEC---------------CEEEEEECCSSCEEEEEECGGGCEEEEEETTSEEEEEETTTCCE
T ss_pred             EEEEeCCCEEEEEECCCCCCcccccCCCCCcceEEEecccCcEEEEEECCCCCEEEEEeCCCeEEEEECCCCeE
Confidence            999999999999998753210         0112235677889999999999999999998 799999765443

>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C

Probab=100.00  E-value=1.5e-35  Score=260.54  Aligned_cols=265  Identities=20%  Similarity=0.300  Sum_probs=214.1

Q ss_pred             cccccccceeEEEEccCCCEEEEeeCCCcEEEEeecCCCceEEEEecCcccCeEEEEeeCCCCCCEEEEEeCCCeEEEEE
Q 022111            6 IETGHEDTVHDVAMDFYGKRLATASSDSSIKIIGLSNSASQHLATLKGHRGPVWQVAWAHPKFGSILASCSYDGQVIIWK   85 (302)
Q Consensus         6 ~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~s~D~~i~iwd   85 (302)
                      ++..|+.+|++++|+|++++|++++.|+.|++|++.....+.+..+.+|...|.+++|+++  +++|++++.|+.|++||
T Consensus         3 ~~~~~~~~i~~~~~s~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~h~~~v~~~~~~~~--~~~l~~~~~dg~i~vwd   80 (372)
T 1k8k_C            3 YHSFLVEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPD--SNRIVTCGTDRNAYVWT   80 (372)
T ss_dssp             EEESCSSCCCEEEECTTSSEEEEECSSSEEEEEEEETTEEEEEEEEECCSSCEEEEEEETT--TTEEEEEETTSCEEEEE
T ss_pred             eecccCCCeEEEEECCCCCEEEEEeCCCEEEEEeCCCCcEEeeeeecCCCCcccEEEEeCC--CCEEEEEcCCCeEEEEE
Confidence            4556999999999999999999999999999999976543467788899999999999874  78999999999999999


Q ss_pred             cCCCCceeEEEEecCCCCCeeEEEecCCCCCcEEEEEecCCcEEEEEecCCCCeee-eeecccCCCCeEEEEeCCCCCCC
Q 022111           86 EGNQNDWTQAHTFNDHKSSVNSIAWAPHELGLSLACGSSDGNISVFTATADGGWDT-TRIDQAHPVGVTSVSWAPAMAPG  164 (302)
Q Consensus        86 ~~~~~~~~~~~~~~~h~~~i~~l~~~pd~~~~~l~sg~~d~~v~~~~~~~~~~~~~-~~~~~~h~~~v~~~~~~~~~~~~  164 (302)
                      +++.. ......+..|...|.+++|+|+  +.+|++++.|+.|++|++.....+.. ..+...|...+.+++|+|++   
T Consensus        81 ~~~~~-~~~~~~~~~~~~~v~~~~~~~~--~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~---  154 (372)
T 1k8k_C           81 LKGRT-WKPTLVILRINRAARCVRWAPN--EKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNS---  154 (372)
T ss_dssp             EETTE-EEEEEECCCCSSCEEEEEECTT--SSEEEEEETTSSEEEEEEETTTTEEEEEEECTTCCSCEEEEEECTTS---
T ss_pred             CCCCe-eeeeEEeecCCCceeEEEECCC--CCEEEEEeCCCEEEEEEecCCCcceeeeeeecccCCCeeEEEEcCCC---
Confidence            96642 2334445679999999999998  67999999999999999986554322 33334788899999999863   


Q ss_pred             ceeecccCCCceeEEEeeCCCcEEEEEEecCc--------------cccccccccccCCCceeEEEeeCCCCCCccEEEE
Q 022111          165 ALVGLGLLDPVQKLASCGCDNTVKVWKMYNGI--------------WKMDCFPALQMHSDWVRSVAWAPNLGLPKSTIAS  230 (302)
Q Consensus       165 ~~~~~~~~~~~~~l~s~~~D~~v~iwd~~~~~--------------~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~l~s  230 (302)
                                 .+|++++.|+.|++||++...              ....++..+.+|...|.+++|+|++    ..|++
T Consensus       155 -----------~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~----~~l~~  219 (372)
T 1k8k_C          155 -----------VLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANG----SRVAW  219 (372)
T ss_dssp             -----------SEEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSS----SEEEE
T ss_pred             -----------CEEEEEcCCCCEEEEEcccccccccccccccccccchhhheEecCCCCCeEEEEEECCCC----CEEEE
Confidence                       789999999999999974210              0113445677899999999999985    78999


Q ss_pred             EecCCeEEEEEeccCCcceeeeeeccCCCcEEEEEEccCCCEEEEecCCceEEeeecC-CceEEEee
Q 022111          231 ASQDGTVVIWTCAKEGEQWEGRVLKDFKTPVWSVSWSLTGNLLAVADANNVTLWKEAV-DGEWQQVS  296 (302)
Q Consensus       231 ~s~D~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~la~~~~d~i~~w~~~~-~~~~~~~~  296 (302)
                      ++.|+.|++||++....   ......+..+|.+++|+|+|++|+++.++.|++|+... ++.|....
T Consensus       220 ~~~d~~i~i~d~~~~~~---~~~~~~~~~~v~~~~~~~~~~~l~~~~d~~i~i~~~~~~~~~~~~~~  283 (372)
T 1k8k_C          220 VSHDSTVCLADADKKMA---VATLASETLPLLAVTFITESSLVAAGHDCFPVLFTYDSAAGKLSFGG  283 (372)
T ss_dssp             EETTTEEEEEEGGGTTE---EEEEECSSCCEEEEEEEETTEEEEEETTSSCEEEEEETTTTEEEECC
T ss_pred             EeCCCEEEEEECCCCce---eEEEccCCCCeEEEEEecCCCEEEEEeCCeEEEEEccCcCceEEEee
Confidence            99999999999986432   22335667789999999999999998545899999854 36676543

>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}

Probab=100.00  E-value=2.2e-37  Score=274.99  Aligned_cols=254  Identities=19%  Similarity=0.258  Sum_probs=201.0

Q ss_pred             cccccccceeEEEEccCCCEEEEeeCCCcEEEEeecCCC-----ceEEEEecCcccCeEEEEeeCCCCCCEEEEEeCCCe
Q 022111            6 IETGHEDTVHDVAMDFYGKRLATASSDSSIKIIGLSNSA-----SQHLATLKGHRGPVWQVAWAHPKFGSILASCSYDGQ   80 (302)
Q Consensus         6 ~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~lw~~~~~~-----~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~s~D~~   80 (302)
                      .+.+|...|.+++|+|++++||+|+.|+.+++|++....     ......+.+|.+.|.++.|.++ .+.+|++|+.|++
T Consensus       103 ~~~~h~~~v~~~~~s~~g~~las~~~d~~v~iw~~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~-~~~~l~s~s~D~~  181 (380)
T 3iz6_a          103 AIKLHCPWVMECAFAPNGQSVACGGLDSACSIFNLSSQADRDGNMPVSRVLTGHKGYASSCQYVPD-QETRLITGSGDQT  181 (380)
T ss_dssp             EEECCCTTCCCCEECTTSSEEEECCSSSCCEEEECCCCSSCCCSSTTCCBCCCCSSCCCCCBCCSS-SSSCEEEECTTSC
T ss_pred             EEecCCCCEEEEEECCCCCEEEEeeCCCcEEEEECCCCccccCCccceeeccCCCcceEEEEEecC-CCCEEEEECCCCc
Confidence            356799999999999999999999999999999985421     1223467899999999999764 3568999999999


Q ss_pred             EEEEEcCCCCceeEEEEe-----cCCCCCeeEEEecCCCCCcEEEEEecCCcEEEEEecCCCCeeeeeecccCCCCeEEE
Q 022111           81 VIIWKEGNQNDWTQAHTF-----NDHKSSVNSIAWAPHELGLSLACGSSDGNISVFTATADGGWDTTRIDQAHPVGVTSV  155 (302)
Q Consensus        81 i~iwd~~~~~~~~~~~~~-----~~h~~~i~~l~~~pd~~~~~l~sg~~d~~v~~~~~~~~~~~~~~~~~~~h~~~v~~~  155 (302)
                      |++||++++.   .+..+     .+|...|.+++|+|.. +.++++|+.|++|++||++.... ....+ .+|...|.++
T Consensus       182 i~~wd~~~~~---~~~~~~~~~~~~h~~~v~~~~~~~~~-~~~l~sgs~D~~v~~wd~~~~~~-~~~~~-~~h~~~v~~v  255 (380)
T 3iz6_a          182 CVLWDVTTGQ---RISIFGSEFPSGHTADVLSLSINSLN-ANMFISGSCDTTVRLWDLRITSR-AVRTY-HGHEGDINSV  255 (380)
T ss_dssp             EEEECTTTCC---EEEEECCCSSSSCCSCEEEEEECSSS-CCEEEEEETTSCEEEEETTTTCC-CCEEE-CCCSSCCCEE
T ss_pred             EEEEEcCCCc---EEEEeecccCCCCccCeEEEEeecCC-CCEEEEEECCCeEEEEECCCCCc-ceEEE-CCcCCCeEEE
Confidence            9999998764   33344     5799999999998742 56899999999999999874322 12233 3799999999


Q ss_pred             EeCCCCCCCceeecccCCCceeEEEeeCCCcEEEEEEecCccccccccccc-------cCCCceeEEEeeCCCCCCccEE
Q 022111          156 SWAPAMAPGALVGLGLLDPVQKLASCGCDNTVKVWKMYNGIWKMDCFPALQ-------MHSDWVRSVAWAPNLGLPKSTI  228 (302)
Q Consensus       156 ~~~~~~~~~~~~~~~~~~~~~~l~s~~~D~~v~iwd~~~~~~~~~~~~~~~-------~h~~~v~~v~~~p~~~~~~~~l  228 (302)
                      +|+|++              .+|+||+.|++|+|||++++..    +..+.       .+...|.+++|+|++    .+|
T Consensus       256 ~~~p~~--------------~~l~s~s~D~~i~lwd~~~~~~----~~~~~~~~~~~~~~~~~v~~~~~s~~g----~~l  313 (380)
T 3iz6_a          256 KFFPDG--------------QRFGTGSDDGTCRLFDMRTGHQ----LQVYNREPDRNDNELPIVTSVAFSISG----RLL  313 (380)
T ss_dssp             EECTTS--------------SEEEEECSSSCEEEEETTTTEE----EEEECCCCSSSCCSSCSCSEEEECSSS----SEE
T ss_pred             EEecCC--------------CeEEEEcCCCeEEEEECCCCcE----EEEecccccccccccCceEEEEECCCC----CEE
Confidence            999964              7899999999999999987632    22222       234468999999995    789


Q ss_pred             EEEecCCeEEEEEeccCCccee-eeeeccCCCcEEEEEEccCCCEEEEecCC-ceEEeeecC
Q 022111          229 ASASQDGTVVIWTCAKEGEQWE-GRVLKDFKTPVWSVSWSLTGNLLAVADAN-NVTLWKEAV  288 (302)
Q Consensus       229 ~s~s~D~~i~iwd~~~~~~~~~-~~~~~~~~~~v~~~~~spdg~~la~~~~d-~i~~w~~~~  288 (302)
                      ++|+.|+.|++||+........ ......|...|.+++|+|||++|++|+.| .|++|+...
T Consensus       314 ~~g~~dg~i~vwd~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~D~~i~iW~~~~  375 (380)
T 3iz6_a          314 FAGYSNGDCYVWDTLLAEMVLNLGTLQNSHEGRISCLGLSSDGSALCTGSWDKNLKIWAFSG  375 (380)
T ss_dssp             EEECTTSCEEEEETTTCCEEEEECCSCSSCCCCCCEEEECSSSSEEEEECTTSCEEEEECCS
T ss_pred             EEEECCCCEEEEECCCCceEEEEecccCCCCCceEEEEECCCCCEEEEeeCCCCEEEEecCC
Confidence            9999999999999865432111 11124678899999999999999999999 799999754

>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a

Probab=100.00  E-value=1.5e-35  Score=257.40  Aligned_cols=251  Identities=24%  Similarity=0.344  Sum_probs=203.4

Q ss_pred             ccccccccceeEEEEccC-CCEEEEeeCCCcEEEEeecCCC---ceEEEEecCcccCeEEEEeeCCCCCCEEEEEeCCCe
Q 022111            5 KIETGHEDTVHDVAMDFY-GKRLATASSDSSIKIIGLSNSA---SQHLATLKGHRGPVWQVAWAHPKFGSILASCSYDGQ   80 (302)
Q Consensus         5 ~~~~~h~~~v~~~~~s~~-~~~l~s~~~d~~v~lw~~~~~~---~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~s~D~~   80 (302)
                      .++.||++.|++++|+|+ +++|||||.|++|+|||+....   ..+...+.+|...|.+++|+++  +++|++++.|+.
T Consensus        32 ~tL~GH~~~V~~v~~sp~~~~~l~S~s~D~~i~vWd~~~~~~~~~~~~~~l~~h~~~V~~~~~s~d--g~~l~s~~~d~~  109 (340)
T 4aow_A           32 GTLKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVVISSD--GQFALSGSWDGT  109 (340)
T ss_dssp             EEECCCSSCEEEEEECTTCTTEEEEEETTSCEEEEEECCSSSCSEEEEEEECCCSSCEEEEEECTT--SSEEEEEETTSE
T ss_pred             EEECCccCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCCCcccceeeEEEeCCCCCEEEEEECCC--CCEEEEEccccc
Confidence            357799999999999998 5899999999999999986432   3456778999999999999864  899999999999


Q ss_pred             EEEEEcCCCCceeEEEEecCCCCCeeEEEecCCCCCcEEEEEecCCcEEEEEecCCCCeeeeeecccCCCCeEEEEeCCC
Q 022111           81 VIIWKEGNQNDWTQAHTFNDHKSSVNSIAWAPHELGLSLACGSSDGNISVFTATADGGWDTTRIDQAHPVGVTSVSWAPA  160 (302)
Q Consensus        81 i~iwd~~~~~~~~~~~~~~~h~~~i~~l~~~pd~~~~~l~sg~~d~~v~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~  160 (302)
                      |++|+....   ........+...+..+.++|+  +..|++|+.|+.+++||.....  ........|...+..++|++.
T Consensus       110 i~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~--~~~l~s~s~d~~~~~~d~~~~~--~~~~~~~~~~~~v~~~~~~~~  182 (340)
T 4aow_A          110 LRLWDLTTG---TTTRRFVGHTKDVLSVAFSSD--NRQIVSGSRDKTIKLWNTLGVC--KYTVQDESHSEWVSCVRFSPN  182 (340)
T ss_dssp             EEEEETTTT---EEEEEEECCSSCEEEEEECTT--SSCEEEEETTSCEEEECTTSCE--EEEECSSSCSSCEEEEEECSC
T ss_pred             ceEEeeccc---ceeeeecCCCCceeEEEEeec--CccceeecCCCeEEEEEeCCCc--eEEEEeccccCcccceEEccC
Confidence            999998665   244455567888999999987  5689999999999999876432  222233478888999999876


Q ss_pred             CCCCceeecccCCCceeEEEeeCCCcEEEEEEecCccccccccccccCCCceeEEEeeCCCCCCccEEEEEecCCeEEEE
Q 022111          161 MAPGALVGLGLLDPVQKLASCGCDNTVKVWKMYNGIWKMDCFPALQMHSDWVRSVAWAPNLGLPKSTIASASQDGTVVIW  240 (302)
Q Consensus       161 ~~~~~~~~~~~~~~~~~l~s~~~D~~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~l~s~s~D~~i~iw  240 (302)
                      .            ....+++++.|+.|++||+.++    .+...+.+|.+.|++++|+|++    ++|++|+.|+.|++|
T Consensus       183 ~------------~~~~~~s~~~d~~i~i~d~~~~----~~~~~~~~h~~~v~~~~~s~~~----~~l~s~s~Dg~i~iw  242 (340)
T 4aow_A          183 S------------SNPIIVSCGWDKLVKVWNLANC----KLKTNHIGHTGYLNTVTVSPDG----SLCASGGKDGQAMLW  242 (340)
T ss_dssp             S------------SSCEEEEEETTSCEEEEETTTT----EEEEEECCCSSCEEEEEECTTS----SEEEEEETTCEEEEE
T ss_pred             C------------CCcEEEEEcCCCEEEEEECCCC----ceeeEecCCCCcEEEEEECCCC----CEEEEEeCCCeEEEE
Confidence            4            2357899999999999999876    3456678999999999999985    789999999999999


Q ss_pred             EeccCCcceeeeeeccCCCcEEEEEEccCCCEEEEecCCceEEeeecC
Q 022111          241 TCAKEGEQWEGRVLKDFKTPVWSVSWSLTGNLLAVADANNVTLWKEAV  288 (302)
Q Consensus       241 d~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~la~~~~d~i~~w~~~~  288 (302)
                      |++....    .........|.++.|+|++.+++++.+..|++|+...
T Consensus       243 d~~~~~~----~~~~~~~~~v~~~~~~~~~~~~~~~~d~~i~iwd~~~  286 (340)
T 4aow_A          243 DLNEGKH----LYTLDGGDIINALCFSPNRYWLCAATGPSIKIWDLEG  286 (340)
T ss_dssp             ETTTTEE----EEEEECSSCEEEEEECSSSSEEEEEETTEEEEEETTT
T ss_pred             EeccCce----eeeecCCceEEeeecCCCCceeeccCCCEEEEEECCC
Confidence            9976421    1112345689999999999888777655899999754

>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}

Probab=100.00  E-value=2.6e-36  Score=281.08  Aligned_cols=238  Identities=34%  Similarity=0.528  Sum_probs=202.6

Q ss_pred             cccccccceeEEEEccCCCEEEEeeCCCcEEEEeecCCCceEEEEecCcccCeEEEEeeCCCCCCEEEEEeCCCeEEEEE
Q 022111            6 IETGHEDTVHDVAMDFYGKRLATASSDSSIKIIGLSNSASQHLATLKGHRGPVWQVAWAHPKFGSILASCSYDGQVIIWK   85 (302)
Q Consensus         6 ~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~s~D~~i~iwd   85 (302)
                      .+.+|...|.+++|+|++++|++++.|++|++|+..   .+.+..+.+|...|.+++|+++  +++|++++.|++|++||
T Consensus       339 ~~~~~~~~v~~~~~s~~g~~l~~~~~dg~v~~~~~~---~~~~~~~~~~~~~v~~~~~s~d--g~~l~~~~~d~~v~~~~  413 (577)
T 2ymu_A          339 TLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRN---GQLLQTLTGHSSSVRGVAFSPD--GQTIASASDDKTVKLWN  413 (577)
T ss_dssp             EECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETT---CCEEEEEECCSSCEEEEEECTT--SSCEEEEETTSEEEEEC
T ss_pred             EEeCCCCCEEEEEECCCCCEEEEEeCCCEEEEEcCC---CCEEEEecCCCCCeEEEEECCC--CCEEEEEeCCCEEEEEe
Confidence            356899999999999999999999999999999964   3456778899999999999864  88999999999999999


Q ss_pred             cCCCCceeEEEEecCCCCCeeEEEecCCCCCcEEEEEecCCcEEEEEecCCCCeeeeeecccCCCCeEEEEeCCCCCCCc
Q 022111           86 EGNQNDWTQAHTFNDHKSSVNSIAWAPHELGLSLACGSSDGNISVFTATADGGWDTTRIDQAHPVGVTSVSWAPAMAPGA  165 (302)
Q Consensus        86 ~~~~~~~~~~~~~~~h~~~i~~l~~~pd~~~~~l~sg~~d~~v~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~  165 (302)
                      ...    .....+.+|...|.+++|+||  +.+|++++.|+.|++|+...  . ....+ .+|...|.+++|+|++    
T Consensus       414 ~~~----~~~~~~~~~~~~v~~~~~s~d--~~~l~~~~~d~~v~~w~~~~--~-~~~~~-~~~~~~v~~~~~spd~----  479 (577)
T 2ymu_A          414 RNG----QLLQTLTGHSSSVWGVAFSPD--DQTIASASDDKTVKLWNRNG--Q-LLQTL-TGHSSSVRGVAFSPDG----  479 (577)
T ss_dssp             TTC----CEEEEEECCSSCEEEEEECTT--SSEEEEEETTSEEEEEETTS--C-EEEEE-ECCSSCEEEEEECTTS----
T ss_pred             CCC----CEEEEecCCCCCeEEEEECCC--CCEEEEEcCCCEEEEEECCC--C-EEEEE-cCCCCCEEEEEEcCCC----
Confidence            643    356778889999999999998  56999999999999999642  1 22333 3788999999999864    


Q ss_pred             eeecccCCCceeEEEeeCCCcEEEEEEecCccccccccccccCCCceeEEEeeCCCCCCccEEEEEecCCeEEEEEeccC
Q 022111          166 LVGLGLLDPVQKLASCGCDNTVKVWKMYNGIWKMDCFPALQMHSDWVRSVAWAPNLGLPKSTIASASQDGTVVIWTCAKE  245 (302)
Q Consensus       166 ~~~~~~~~~~~~l~s~~~D~~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~l~s~s~D~~i~iwd~~~~  245 (302)
                                ++|++++.|++|+|||.. +    .++..+.+|...|++|+|+|++    ++|++++.|+.|++||....
T Consensus       480 ----------~~las~~~d~~i~iw~~~-~----~~~~~~~~h~~~v~~l~~s~dg----~~l~s~~~dg~v~lwd~~~~  540 (577)
T 2ymu_A          480 ----------QTIASASDDKTVKLWNRN-G----QLLQTLTGHSSSVRGVAFSPDG----QTIASASDDKTVKLWNRNGQ  540 (577)
T ss_dssp             ----------CEEEEEETTSEEEEEETT-S----CEEEEEECCSSCEEEEEECTTS----SCEEEEETTSEEEEECTTSC
T ss_pred             ----------CEEEEEeCCCEEEEEcCC-C----CEEEEEeCCCCCEEEEEEcCCC----CEEEEEECcCEEEEEeCCCC
Confidence                      789999999999999953 3    3556788999999999999996    77999999999999996421


Q ss_pred             CcceeeeeeccCCCcEEEEEEccCCCEEEEecCC-ceEEee
Q 022111          246 GEQWEGRVLKDFKTPVWSVSWSLTGNLLAVADAN-NVTLWK  285 (302)
Q Consensus       246 ~~~~~~~~~~~~~~~v~~~~~spdg~~la~~~~d-~i~~w~  285 (302)
                          ....+.+|..+|++++|+|||++|++++.| .|++||
T Consensus       541 ----~~~~~~~h~~~v~~~~fs~dg~~l~s~~~D~~i~~Wd  577 (577)
T 2ymu_A          541 ----LLQTLTGHSSSVWGVAFSPDGQTIASASSDKTVKLWN  577 (577)
T ss_dssp             ----EEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEEC
T ss_pred             ----EEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCEEEEeC
Confidence                123456888999999999999999999998 799996

>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...

Probab=100.00  E-value=9.5e-36  Score=256.88  Aligned_cols=246  Identities=24%  Similarity=0.370  Sum_probs=201.3

Q ss_pred             cccccccceeEEEEccCCCEEEEeeCCCcEEEEeecCCCceEEEEecCcccCeEEEEeeCCCCCCEEEEEeCCCeEEEEE
Q 022111            6 IETGHEDTVHDVAMDFYGKRLATASSDSSIKIIGLSNSASQHLATLKGHRGPVWQVAWAHPKFGSILASCSYDGQVIIWK   85 (302)
Q Consensus         6 ~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~s~D~~i~iwd   85 (302)
                      .+.+|...|.+++|+|++++|++|+.|++|++||+...  +.+..+.+|...|.+++|+++  +++|++|+.|++|++||
T Consensus        60 ~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~--~~~~~~~~~~~~v~~~~~~~~--~~~l~s~~~d~~i~iwd  135 (312)
T 4ery_A           60 TISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSG--KCLKTLKGHSNYVFCCNFNPQ--SNLIVSGSFDESVRIWD  135 (312)
T ss_dssp             EECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTC--CEEEEEECCSSCEEEEEECSS--SSEEEEEETTSCEEEEE
T ss_pred             hhccCCCceEEEEEcCCCCEEEEECCCCEEEEEECCCC--cEEEEEcCCCCCEEEEEEcCC--CCEEEEEeCCCcEEEEE
Confidence            45689999999999999999999999999999998653  466788899999999999864  78999999999999999


Q ss_pred             cCCCCceeEEEEecCCCCCeeEEEecCCCCCcEEEEEecCCcEEEEEecCCCCeeeeeecccCCCCeEEEEeCCCCCCCc
Q 022111           86 EGNQNDWTQAHTFNDHKSSVNSIAWAPHELGLSLACGSSDGNISVFTATADGGWDTTRIDQAHPVGVTSVSWAPAMAPGA  165 (302)
Q Consensus        86 ~~~~~~~~~~~~~~~h~~~i~~l~~~pd~~~~~l~sg~~d~~v~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~  165 (302)
                      +++.   .....+..|..+|.+++|+|+  +.++++|+.|+.|++||++....  ...+...+...+..++|+|++    
T Consensus       136 ~~~~---~~~~~~~~~~~~v~~~~~~~~--~~~l~~~~~d~~i~~wd~~~~~~--~~~~~~~~~~~~~~~~~~~~~----  204 (312)
T 4ery_A          136 VKTG---KCLKTLPAHSDPVSAVHFNRD--GSLIVSSSYDGLCRIWDTASGQC--LKTLIDDDNPPVSFVKFSPNG----  204 (312)
T ss_dssp             TTTC---CEEEEECCCSSCEEEEEECTT--SSEEEEEETTSCEEEEETTTCCE--EEEECCSSCCCEEEEEECTTS----
T ss_pred             CCCC---EEEEEecCCCCcEEEEEEcCC--CCEEEEEeCCCcEEEEECCCCce--eeEEeccCCCceEEEEECCCC----
Confidence            9765   356778889999999999998  66999999999999999875432  223333566778999999864    


Q ss_pred             eeecccCCCceeEEEeeCCCcEEEEEEecCccccccccccccCCCceeE--EEeeCCCCCCccEEEEEecCCeEEEEEec
Q 022111          166 LVGLGLLDPVQKLASCGCDNTVKVWKMYNGIWKMDCFPALQMHSDWVRS--VAWAPNLGLPKSTIASASQDGTVVIWTCA  243 (302)
Q Consensus       166 ~~~~~~~~~~~~l~s~~~D~~v~iwd~~~~~~~~~~~~~~~~h~~~v~~--v~~~p~~~~~~~~l~s~s~D~~i~iwd~~  243 (302)
                                .+|++++.|+.|++||++++    .++..+.+|...+.+  ..|++..   +.+|++|+.|+.|++||++
T Consensus       205 ----------~~l~~~~~d~~i~iwd~~~~----~~~~~~~~~~~~~~~~~~~~~~~~---~~~l~sg~~dg~i~vwd~~  267 (312)
T 4ery_A          205 ----------KYILAATLDNTLKLWDYSKG----KCLKTYTGHKNEKYCIFANFSVTG---GKWIVSGSEDNLVYIWNLQ  267 (312)
T ss_dssp             ----------SEEEEEETTTEEEEEETTTT----EEEEEECSSCCSSSCCCEEEECSS---SCEEEECCTTSCEEEEETT
T ss_pred             ----------CEEEEEcCCCeEEEEECCCC----cEEEEEEecCCceEEEEEEEEeCC---CcEEEEECCCCEEEEEECC
Confidence                      78999999999999999876    344556677655433  3455432   4789999999999999997


Q ss_pred             cCCcceeeeeeccCCCcEEEEEEccCCCEEEEec--CC-ceEEeee
Q 022111          244 KEGEQWEGRVLKDFKTPVWSVSWSLTGNLLAVAD--AN-NVTLWKE  286 (302)
Q Consensus       244 ~~~~~~~~~~~~~~~~~v~~~~~spdg~~la~~~--~d-~i~~w~~  286 (302)
                      ...   ....+.+|...|.+++|+|++++|++++  .| .|++|+.
T Consensus       268 ~~~---~~~~~~~h~~~v~~~~~~p~~~~l~s~~~~~d~~i~~W~~  310 (312)
T 4ery_A          268 TKE---IVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLWKS  310 (312)
T ss_dssp             TCC---EEEEECCCSSCEEEEEECSSSSEEEEEECTTTCCEEEEEC
T ss_pred             Cch---hhhhhhccCCcEEEEeecCcCCceEEEEccCCccEEEecC
Confidence            642   1234567888999999999999999885  45 7999985

>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}

Probab=100.00  E-value=9.3e-36  Score=277.29  Aligned_cols=256  Identities=30%  Similarity=0.485  Sum_probs=207.0

Q ss_pred             cccccccccceeEEEEccCCCEEEEeeCCCcEEEEeecCCCceEEEEecCcccCeEEEEeeCCCCCCEEEEEeCCCeEEE
Q 022111            4 QKIETGHEDTVHDVAMDFYGKRLATASSDSSIKIIGLSNSASQHLATLKGHRGPVWQVAWAHPKFGSILASCSYDGQVII   83 (302)
Q Consensus         4 ~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~s~D~~i~i   83 (302)
                      +..+.||++.|++++|+|||++||+|+.|++|+|||..   .+.+.++.+|.+.|++++|+|+  +++||+++.|++|++
T Consensus         9 ~~~L~GH~~~V~~~a~spdg~~las~~~d~~v~iWd~~---~~~~~~l~gh~~~V~~l~fspd--g~~las~~~d~~i~v   83 (577)
T 2ymu_A            9 RNRLEAHSSSVRGVAFSPDGQTIASASDDKTVKLWNRN---GQLLQTLTGHSSSVWGVAFSPD--GQTIASASDDKTVKL   83 (577)
T ss_dssp             EEEECCCSSCEEEEEECTTSSCEEEEETTSEEEEECTT---SCEEEEEECCSSCEEEEEECTT--SSEEEEEETTSCEEE
T ss_pred             eeEECCCCCcEEEEEECCCCCEEEEEeCCCEEEEEECC---CCEEEEEeCCCCCEEEEEECCC--CCEEEEEeCCCEEEE
Confidence            44578999999999999999999999999999999963   3567889999999999999874  899999999999999


Q ss_pred             EEcCCCCceeEEEEecCCCCCeeEEEecCCCCCcEEEEEecCCcEEEEEecCCCCeeeeeecccCCCCeEEEEeCCCCCC
Q 022111           84 WKEGNQNDWTQAHTFNDHKSSVNSIAWAPHELGLSLACGSSDGNISVFTATADGGWDTTRIDQAHPVGVTSVSWAPAMAP  163 (302)
Q Consensus        84 wd~~~~~~~~~~~~~~~h~~~i~~l~~~pd~~~~~l~sg~~d~~v~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~  163 (302)
                      ||...    ..+.++.+|...|.+++|+|+  +.+|++++.|+.+++|+....   ..... ..|...+..+.++|+...
T Consensus        84 Wd~~~----~~~~~~~~~~~~v~~~~~s~d--~~~l~~~~~d~~~~~~~~~~~---~~~~~-~~~~~~v~~~~~~~~~~~  153 (577)
T 2ymu_A           84 WNRNG----QLLQTLTGHSSSVRGVAFSPD--GQTIASASDDKTVKLWNRNGQ---LLQTL-TGHSSSVWGVAFSPDGQT  153 (577)
T ss_dssp             EETTS----CEEEEECCCSSCEEEEEECTT--SSEEEEEETTSCEEEEETTCC---EEEEE-CCCSSCEEEEEECTTSSC
T ss_pred             EECCC----CEEEEEECCCCCEEEEEECCC--CCEEEEEcCCCceeecccccc---eeeec-cCCCCceeeeeeecCCcc
Confidence            99743    367788999999999999998  679999999999999986432   11222 256667777777765421


Q ss_pred             ---------------------------CceeecccCCCceeEEEeeCCCcEEEEEEecCccccccccccccCCCceeEEE
Q 022111          164 ---------------------------GALVGLGLLDPVQKLASCGCDNTVKVWKMYNGIWKMDCFPALQMHSDWVRSVA  216 (302)
Q Consensus       164 ---------------------------~~~~~~~~~~~~~~l~s~~~D~~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~  216 (302)
                                                 ..+..+...+++.+|++++.|+.|++||...     ..+..+.+|...|.+++
T Consensus       154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~~w~~~~-----~~~~~~~~~~~~v~~~~  228 (577)
T 2ymu_A          154 IASASDDKTVKLWNRNGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNG-----QLLQTLTGHSSSVRGVA  228 (577)
T ss_dssp             EEEEETTSEEEEECTTSCEEEEEECCSSCEEEEEECTTSSCEEEEETTSEEEEECTTS-----CEEEEEECCSSCEEEEE
T ss_pred             ceecccccceeccccceeeeeeccCCCcceeeeeecCCCCEEEEEcCCCEEEEEeCCC-----cEEEEEecCCCCEEEEE
Confidence                                       0111222345578899999999999999543     34556788999999999


Q ss_pred             eeCCCCCCccEEEEEecCCeEEEEEeccCCcceeeeeeccCCCcEEEEEEccCCCEEEEecCC-ceEEeeec
Q 022111          217 WAPNLGLPKSTIASASQDGTVVIWTCAKEGEQWEGRVLKDFKTPVWSVSWSLTGNLLAVADAN-NVTLWKEA  287 (302)
Q Consensus       217 ~~p~~~~~~~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~la~~~~d-~i~~w~~~  287 (302)
                      |+|++    ..|++++.|+.|++||....    ....+..+..+|.+++|+|+|++|++++.| .+++|+..
T Consensus       229 ~s~dg----~~l~~~~~d~~i~~w~~~~~----~~~~~~~~~~~v~~v~~~~d~~~l~~~~~d~~i~~w~~~  292 (577)
T 2ymu_A          229 FSPDG----QTIASASDDKTVKLWNRNGQ----LLQTLTGHSSSVNGVAFRPDGQTIASASDDKTVKLWNRN  292 (577)
T ss_dssp             ECTTS----SCEEEEETTSCEEEECTTSC----EEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETT
T ss_pred             ECCCC----CEEEEEeCCCEEEEEeCCCC----EEEEEecCCCCEEEEEEcCCCCEEEEEeCCCEEEEEeCC
Confidence            99995    67999999999999996432    123456788899999999999999999888 79999953

>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A

Probab=100.00  E-value=1.8e-35  Score=261.40  Aligned_cols=215  Identities=12%  Similarity=0.094  Sum_probs=157.6

Q ss_pred             cCeEEEEeeCCCCCCEEE--EEeCCCeEEEEEcCCCCceeEEEEecCCCCCeeEEEecCCCCCcEEEEEecCCcEEEEEe
Q 022111           56 GPVWQVAWAHPKFGSILA--SCSYDGQVIIWKEGNQNDWTQAHTFNDHKSSVNSIAWAPHELGLSLACGSSDGNISVFTA  133 (302)
Q Consensus        56 ~~v~~v~~~~~~~~~~l~--s~s~D~~i~iwd~~~~~~~~~~~~~~~h~~~i~~l~~~pd~~~~~l~sg~~d~~v~~~~~  133 (302)
                      ..+..++|+|+  |++||  +++.|++|+|||+++.   .++..+. |...|.+++|+||  |.++++++.++ +.+|+.
T Consensus       134 ~~~~~v~fSpD--g~~la~as~~~d~~i~iwd~~~~---~~~~~~~-~~~~V~~v~fspd--g~~l~s~s~~~-~~~~~~  204 (365)
T 4h5i_A          134 DYTKLVYISRE--GTVAAIASSKVPAIMRIIDPSDL---TEKFEIE-TRGEVKDLHFSTD--GKVVAYITGSS-LEVIST  204 (365)
T ss_dssp             CCEEEEEECTT--SSCEEEEESCSSCEEEEEETTTT---EEEEEEE-CSSCCCEEEECTT--SSEEEEECSSC-EEEEET
T ss_pred             cCEEEEEEcCC--CCEEEEEECCCCCEEEEeECCCC---cEEEEeC-CCCceEEEEEccC--CceEEecccee-EEEEEe
Confidence            34678899874  78765  4557999999999775   3455554 7788999999998  77899988655 555655


Q ss_pred             cCCCCeeeeeecccCCCCeEEEEeCCCCCCCceeecccCCCceeEEEeeCCC----cEEEEEEecCccccccccccccCC
Q 022111          134 TADGGWDTTRIDQAHPVGVTSVSWAPAMAPGALVGLGLLDPVQKLASCGCDN----TVKVWKMYNGIWKMDCFPALQMHS  209 (302)
Q Consensus       134 ~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~D~----~v~iwd~~~~~~~~~~~~~~~~h~  209 (302)
                      ..... ........|...+.+++|+|++              ..+++++.|+    .+++||+............+.+|.
T Consensus       205 ~~~~~-~~~~~~~~~~~~v~~v~fspdg--------------~~l~~~s~d~~~~~~i~~~~~~~~~~~~~~~~~~~~~~  269 (365)
T 4h5i_A          205 VTGSC-IARKTDFDKNWSLSKINFIADD--------------TVLIAASLKKGKGIVLTKISIKSGNTSVLRSKQVTNRF  269 (365)
T ss_dssp             TTCCE-EEEECCCCTTEEEEEEEEEETT--------------EEEEEEEESSSCCEEEEEEEEETTEEEEEEEEEEESSC
T ss_pred             ccCcc-eeeeecCCCCCCEEEEEEcCCC--------------CEEEEEecCCcceeEEeecccccceecceeeeeecCCC
Confidence            43322 2222334678889999999864              7899998887    688899877644333345677899


Q ss_pred             CceeEEEeeCCCCCCccEEEEEecCCeEEEEEeccCCcceeeeeeccCCCcEEEEEEccCCCEEEEecCC-ceEEeeecC
Q 022111          210 DWVRSVAWAPNLGLPKSTIASASQDGTVVIWTCAKEGEQWEGRVLKDFKTPVWSVSWSLTGNLLAVADAN-NVTLWKEAV  288 (302)
Q Consensus       210 ~~v~~v~~~p~~~~~~~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~la~~~~d-~i~~w~~~~  288 (302)
                      ..|++++|+|++    ++||+|+.|++|+|||+++..  ....++.+|..+|++|+|||||++||+++.| +|+||++..
T Consensus       270 ~~V~~~~~Spdg----~~lasgs~D~~V~iwd~~~~~--~~~~~~~gH~~~V~~v~fSpdg~~laS~S~D~tvrvw~ip~  343 (365)
T 4h5i_A          270 KGITSMDVDMKG----ELAVLASNDNSIALVKLKDLS--MSKIFKQAHSFAITEVTISPDSTYVASVSAANTIHIIKLPL  343 (365)
T ss_dssp             SCEEEEEECTTS----CEEEEEETTSCEEEEETTTTE--EEEEETTSSSSCEEEEEECTTSCEEEEEETTSEEEEEECCT
T ss_pred             CCeEeEEECCCC----CceEEEcCCCEEEEEECCCCc--EEEEecCcccCCEEEEEECCCCCEEEEEeCCCeEEEEEcCC
Confidence            999999999995    789999999999999997642  1223456789999999999999999999999 799999854


Q ss_pred             C-----ceEEEeeecCC
Q 022111          289 D-----GEWQQVSVVEP  300 (302)
Q Consensus       289 ~-----~~~~~~~~~~~  300 (302)
                      +     ..|++...+||
T Consensus       344 ~~~~~~s~~~~l~kl~~  360 (365)
T 4h5i_A          344 NYANYTSMKQKISKLEH  360 (365)
T ss_dssp             TTTC-------------
T ss_pred             CCcCccCccccceeeec
Confidence            2     22666666665

>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}

Probab=100.00  E-value=6.7e-35  Score=278.12  Aligned_cols=251  Identities=21%  Similarity=0.314  Sum_probs=193.7

Q ss_pred             cccccccceeEEEEccCCCEEEEeeCCCcEEEEeecCCCceEEEEecCcccCeEEEEeeCCCCCCEEEEEeCCCeEEEEE
Q 022111            6 IETGHEDTVHDVAMDFYGKRLATASSDSSIKIIGLSNSASQHLATLKGHRGPVWQVAWAHPKFGSILASCSYDGQVIIWK   85 (302)
Q Consensus         6 ~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~s~D~~i~iwd   85 (302)
                      .+.+|...|++++|++++++|++|+.|++|+|||+..  ...+..+.+|...|.+++|+++  +++|+||+.|++|++||
T Consensus       425 ~~~~h~~~v~~v~~s~~g~~l~sgs~Dg~v~vwd~~~--~~~~~~~~~h~~~v~~~~~s~~--~~~l~s~s~D~~i~iwd  500 (694)
T 3dm0_A          425 RLTGHSHFVEDVVLSSDGQFALSGSWDGELRLWDLAA--GVSTRRFVGHTKDVLSVAFSLD--NRQIVSASRDRTIKLWN  500 (694)
T ss_dssp             EEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTT--TEEEEEEECCSSCEEEEEECTT--SSCEEEEETTSCEEEEC
T ss_pred             eecCCCCcEEEEEECCCCCEEEEEeCCCcEEEEECCC--CcceeEEeCCCCCEEEEEEeCC--CCEEEEEeCCCEEEEEE
Confidence            4668999999999999999999999999999999865  4566788899999999999864  78999999999999999


Q ss_pred             cCCCCceeEEEEecCCCCCeeEEEecCCCCCcEEEEEecCCcEEEEEecCCCCeeeeeecccCCCCeEEEEeCCCCCCCc
Q 022111           86 EGNQNDWTQAHTFNDHKSSVNSIAWAPHELGLSLACGSSDGNISVFTATADGGWDTTRIDQAHPVGVTSVSWAPAMAPGA  165 (302)
Q Consensus        86 ~~~~~~~~~~~~~~~h~~~i~~l~~~pd~~~~~l~sg~~d~~v~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~  165 (302)
                      ..............+|...|.+++|+|+.....+++|+.|++|++||++...  ....+ .+|...|++++|+|++    
T Consensus       501 ~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~vwd~~~~~--~~~~~-~~h~~~v~~v~~spdg----  573 (694)
T 3dm0_A          501 TLGECKYTISEGGEGHRDWVSCVRFSPNTLQPTIVSASWDKTVKVWNLSNCK--LRSTL-AGHTGYVSTVAVSPDG----  573 (694)
T ss_dssp             TTSCEEEEECSSTTSCSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTCC--EEEEE-CCCSSCEEEEEECTTS----
T ss_pred             CCCCcceeeccCCCCCCCcEEEEEEeCCCCcceEEEEeCCCeEEEEECCCCc--EEEEE-cCCCCCEEEEEEeCCC----
Confidence            7543211111123468999999999998544589999999999999987542  22233 3799999999999864    


Q ss_pred             eeecccCCCceeEEEeeCCCcEEEEEEecCccccccccccccCCCceeEEEeeCCCCCCccEEEEEecCCeEEEEEeccC
Q 022111          166 LVGLGLLDPVQKLASCGCDNTVKVWKMYNGIWKMDCFPALQMHSDWVRSVAWAPNLGLPKSTIASASQDGTVVIWTCAKE  245 (302)
Q Consensus       166 ~~~~~~~~~~~~l~s~~~D~~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~l~s~s~D~~i~iwd~~~~  245 (302)
                                .+|++|+.|++|+|||+.++.    ++..+. +...|.+++|+|++    ..|+ ++.|+.|+|||++..
T Consensus       574 ----------~~l~sg~~Dg~i~iwd~~~~~----~~~~~~-~~~~v~~~~~sp~~----~~l~-~~~~~~i~iwd~~~~  633 (694)
T 3dm0_A          574 ----------SLCASGGKDGVVLLWDLAEGK----KLYSLE-ANSVIHALCFSPNR----YWLC-AATEHGIKIWDLESK  633 (694)
T ss_dssp             ----------SEEEEEETTSBCEEEETTTTE----EEECCB-CSSCEEEEEECSSS----SEEE-EEETTEEEEEETTTT
T ss_pred             ----------CEEEEEeCCCeEEEEECCCCc----eEEEec-CCCcEEEEEEcCCC----cEEE-EEcCCCEEEEECCCC
Confidence                      789999999999999998763    233333 45679999999984    4454 456777999999764


Q ss_pred             Ccceeeee----------------eccCCCcEEEEEEccCCCEEEEecCC-ceEEeeec
Q 022111          246 GEQWEGRV----------------LKDFKTPVWSVSWSLTGNLLAVADAN-NVTLWKEA  287 (302)
Q Consensus       246 ~~~~~~~~----------------~~~~~~~v~~~~~spdg~~la~~~~d-~i~~w~~~  287 (302)
                      ........                .......+.+++|||||++|++|+.| .|++|++.
T Consensus       634 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~spdg~~l~sgs~Dg~i~iW~i~  692 (694)
T 3dm0_A          634 SIVEDLKVDLKAEAEKADNSGPAATKRKVIYCTSLNWSADGSTLFSGYTDGVIRVWGIG  692 (694)
T ss_dssp             EEEEEECCCCC----------------CCCCEEEEEECTTSSEEEEEETTSEEEEEEC-
T ss_pred             CChhhhccccccccccccccccccCCceeEEeeeEEEcCCCCEEEEEcCCCeEEEEecc
Confidence            21100000                00011237899999999999999999 79999974

>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A

Probab=100.00  E-value=1e-33  Score=245.15  Aligned_cols=240  Identities=17%  Similarity=0.236  Sum_probs=202.6

Q ss_pred             ccccceeEEEEccCCCEEEEeeCCCcEEEEeecCCCceEEEEecCcccCeEEEEeeCCCCCCEEEEEeCCCeEEEEEcCC
Q 022111            9 GHEDTVHDVAMDFYGKRLATASSDSSIKIIGLSNSASQHLATLKGHRGPVWQVAWAHPKFGSILASCSYDGQVIIWKEGN   88 (302)
Q Consensus         9 ~h~~~v~~~~~s~~~~~l~s~~~d~~v~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~s~D~~i~iwd~~~   88 (302)
                      +|...|.+++|+|++++|++++.|+.|++|++..........+.+|...|.+++|+++  +++|++++.|+.|++||+++
T Consensus        95 ~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~--~~~l~~~~~dg~v~~~d~~~  172 (337)
T 1gxr_A           95 NRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPD--SKVCFSCCSDGNIAVWDLHN  172 (337)
T ss_dssp             CTTSBEEEEEECTTSSEEEEEESSSEEEEEECCCC--EEEEEEECSSSCEEEEEECTT--SSEEEEEETTSCEEEEETTT
T ss_pred             CCCCcEEEEEEcCCCCEEEEEcCCCcEEEEECCCCCcceeeecccCCCceEEEEECCC--CCEEEEEeCCCcEEEEeCCC
Confidence            7899999999999999999999999999999976554456678889999999999864  78999999999999999976


Q ss_pred             CCceeEEEEecCCCCCeeEEEecCCCCCcEEEEEecCCcEEEEEecCCCCeeeeeecccCCCCeEEEEeCCCCCCCceee
Q 022111           89 QNDWTQAHTFNDHKSSVNSIAWAPHELGLSLACGSSDGNISVFTATADGGWDTTRIDQAHPVGVTSVSWAPAMAPGALVG  168 (302)
Q Consensus        89 ~~~~~~~~~~~~h~~~i~~l~~~pd~~~~~l~sg~~d~~v~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~  168 (302)
                      .   .....+..|...|.+++|+|+  +.+|++++.|+.|++||++....  ...+  .+...+.+++|+|++       
T Consensus       173 ~---~~~~~~~~~~~~i~~~~~~~~--~~~l~~~~~dg~i~~~d~~~~~~--~~~~--~~~~~v~~~~~s~~~-------  236 (337)
T 1gxr_A          173 Q---TLVRQFQGHTDGASCIDISND--GTKLWTGGLDNTVRSWDLREGRQ--LQQH--DFTSQIFSLGYCPTG-------  236 (337)
T ss_dssp             T---EEEEEECCCSSCEEEEEECTT--SSEEEEEETTSEEEEEETTTTEE--EEEE--ECSSCEEEEEECTTS-------
T ss_pred             C---ceeeeeecccCceEEEEECCC--CCEEEEEecCCcEEEEECCCCce--Eeee--cCCCceEEEEECCCC-------
Confidence            5   466778889999999999998  66899999999999999875422  2222  467789999999864       


Q ss_pred             cccCCCceeEEEeeCCCcEEEEEEecCccccccccccccCCCceeEEEeeCCCCCCccEEEEEecCCeEEEEEeccCCcc
Q 022111          169 LGLLDPVQKLASCGCDNTVKVWKMYNGIWKMDCFPALQMHSDWVRSVAWAPNLGLPKSTIASASQDGTVVIWTCAKEGEQ  248 (302)
Q Consensus       169 ~~~~~~~~~l~s~~~D~~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~l~s~s~D~~i~iwd~~~~~~~  248 (302)
                             ..|++++.|+.|++||+.++.     ...+..|...|.+++|+|++    +.|++++.|+.|++||+..... 
T Consensus       237 -------~~l~~~~~~~~i~~~~~~~~~-----~~~~~~~~~~v~~~~~~~~~----~~l~~~~~dg~i~~~~~~~~~~-  299 (337)
T 1gxr_A          237 -------EWLAVGMESSNVEVLHVNKPD-----KYQLHLHESCVLSLKFAYCG----KWFVSTGKDNLLNAWRTPYGAS-  299 (337)
T ss_dssp             -------SEEEEEETTSCEEEEETTSSC-----EEEECCCSSCEEEEEECTTS----SEEEEEETTSEEEEEETTTCCE-
T ss_pred             -------CEEEEEcCCCcEEEEECCCCC-----eEEEcCCccceeEEEECCCC----CEEEEecCCCcEEEEECCCCeE-
Confidence                   789999999999999998753     23467899999999999985    7899999999999999876432 


Q ss_pred             eeeeeeccCCCcEEEEEEccCCCEEEEecCC-ceEEeee
Q 022111          249 WEGRVLKDFKTPVWSVSWSLTGNLLAVADAN-NVTLWKE  286 (302)
Q Consensus       249 ~~~~~~~~~~~~v~~~~~spdg~~la~~~~d-~i~~w~~  286 (302)
                         .....+...+.+++|+|++++|++++.| .|++|+.
T Consensus       300 ---~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~  335 (337)
T 1gxr_A          300 ---IFQSKESSSVLSCDISVDDKYIVTGSGDKKATVYEV  335 (337)
T ss_dssp             ---EEEEECSSCEEEEEECTTSCEEEEEETTSCEEEEEE
T ss_pred             ---EEEecCCCcEEEEEECCCCCEEEEecCCCeEEEEEE
Confidence               1224567889999999999999999988 6999985

>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*

Probab=100.00  E-value=3.5e-34  Score=253.86  Aligned_cols=262  Identities=12%  Similarity=0.114  Sum_probs=196.7

Q ss_pred             cccccccceeEEEEccCC-CEEEEeeCCCcEEEEeecCCCceEEEEecCcccCeEEEEeeCCCCCCEEEEEeCCCeEEEE
Q 022111            6 IETGHEDTVHDVAMDFYG-KRLATASSDSSIKIIGLSNSASQHLATLKGHRGPVWQVAWAHPKFGSILASCSYDGQVIIW   84 (302)
Q Consensus         6 ~~~~h~~~v~~~~~s~~~-~~l~s~~~d~~v~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~s~D~~i~iw   84 (302)
                      .+.+|...|++++|+|++ ++|++|+.|++|++|++..........+.+|...|.+++|++. ++++|++++.|++|++|
T Consensus        68 ~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~~~~-~~~~l~s~~~d~~i~iw  146 (383)
T 3ei3_B           68 TASPFDRRVTSLEWHPTHPTTVAVGSKGGDIILWDYDVQNKTSFIQGMGPGDAITGMKFNQF-NTNQLFVSSIRGATTLR  146 (383)
T ss_dssp             EECCCSSCEEEEEECSSCTTEEEEEEBTSCEEEEETTSTTCEEEECCCSTTCBEEEEEEETT-EEEEEEEEETTTEEEEE
T ss_pred             eccCCCCCEEEEEECCCCCCEEEEEcCCCeEEEEeCCCcccceeeecCCcCCceeEEEeCCC-CCCEEEEEeCCCEEEEE
Confidence            456899999999999999 9999999999999999976554444444579999999999863 36899999999999999


Q ss_pred             EcCCCCceeEEEEecCCCCCeeEEEecCCCCCcEEEEEecCCcEEEEEecCCCCeeeeeecccCCCCeEEEEeCCCCCCC
Q 022111           85 KEGNQNDWTQAHTFNDHKSSVNSIAWAPHELGLSLACGSSDGNISVFTATADGGWDTTRIDQAHPVGVTSVSWAPAMAPG  164 (302)
Q Consensus        85 d~~~~~~~~~~~~~~~h~~~i~~l~~~pd~~~~~l~sg~~d~~v~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~  164 (302)
                      |++.. ..........|...|.+++|+|+  +.+|++|+.|+.|++||++ ..  ....+. .|...|.+++|+|++   
T Consensus       147 d~~~~-~~~~~~~~~~~~~~v~~~~~~~~--~~~l~~~~~d~~i~i~d~~-~~--~~~~~~-~h~~~v~~~~~~~~~---  216 (383)
T 3ei3_B          147 DFSGS-VIQVFAKTDSWDYWYCCVDVSVS--RQMLATGDSTGRLLLLGLD-GH--EIFKEK-LHKAKVTHAEFNPRC---  216 (383)
T ss_dssp             ETTSC-EEEEEECCCCSSCCEEEEEEETT--TTEEEEEETTSEEEEEETT-SC--EEEEEE-CSSSCEEEEEECSSC---
T ss_pred             ECCCC-ceEEEeccCCCCCCeEEEEECCC--CCEEEEECCCCCEEEEECC-CC--EEEEec-cCCCcEEEEEECCCC---
Confidence            99753 22222222345588999999998  6699999999999999984 21  223343 788999999999864   


Q ss_pred             ceeecccCCCceeEEEeeCCCcEEEEEEecCccccccccccccCCCceeEEEeeC-CCCCCccEEEEEecCCeEEEEEec
Q 022111          165 ALVGLGLLDPVQKLASCGCDNTVKVWKMYNGIWKMDCFPALQMHSDWVRSVAWAP-NLGLPKSTIASASQDGTVVIWTCA  243 (302)
Q Consensus       165 ~~~~~~~~~~~~~l~s~~~D~~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~~~p-~~~~~~~~l~s~s~D~~i~iwd~~  243 (302)
                                ..+|++|+.|+.|++||+++......++..+ +|...|.+++|+| ++    ..|++++.|+.|++||++
T Consensus       217 ----------~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~-~~~~~v~~~~~s~~~~----~~l~~~~~d~~i~iwd~~  281 (383)
T 3ei3_B          217 ----------DWLMATSSVDATVKLWDLRNIKDKNSYIAEM-PHEKPVNAAYFNPTDS----TKLLTTDQRNEIRVYSSY  281 (383)
T ss_dssp             ----------TTEEEEEETTSEEEEEEGGGCCSTTCEEEEE-ECSSCEEEEEECTTTS----CEEEEEESSSEEEEEETT
T ss_pred             ----------CCEEEEEeCCCEEEEEeCCCCCcccceEEEe-cCCCceEEEEEcCCCC----CEEEEEcCCCcEEEEECC
Confidence                      1289999999999999998743222333334 6999999999999 74    789999999999999997


Q ss_pred             cCCcceeeeee----ccC----------CCcEEEEEEccCCCEEEEecCC-ceEEeeecCCceEEEe
Q 022111          244 KEGEQWEGRVL----KDF----------KTPVWSVSWSLTGNLLAVADAN-NVTLWKEAVDGEWQQV  295 (302)
Q Consensus       244 ~~~~~~~~~~~----~~~----------~~~v~~~~~spdg~~la~~~~d-~i~~w~~~~~~~~~~~  295 (302)
                      ...........    ..+          ...+..++|+|+|++  +++.| .|++|+.........+
T Consensus       282 ~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~s~dg~~--s~s~d~~i~iwd~~~~~~~~~l  346 (383)
T 3ei3_B          282 DWSKPDQIIIHPHRQFQHLTPIKATWHPMYDLIVAGRYPDDQL--LLNDKRTIDIYDANSGGLVHQL  346 (383)
T ss_dssp             BTTSCSEEEECCBCCCTTSCCCCCEECSSSSEEEEECBCCTTT--CTTCCCCEEEEETTTCCEEEEE
T ss_pred             CCccccccccccccccccccceEEeccCCCCceEEEecCCccc--ccCCCCeEEEEecCCCceeeee
Confidence            64321110000    011          134555777777777  66667 7999998655544443

>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}

Probab=100.00  E-value=8e-34  Score=248.67  Aligned_cols=252  Identities=19%  Similarity=0.281  Sum_probs=202.0

Q ss_pred             ccccccccceeEEEEccCCCEEEEeeCCCcEEEEeecCCCceEEEEecCcccCeEEEEeeCCCCCCEEEEEeCCCeEEEE
Q 022111            5 KIETGHEDTVHDVAMDFYGKRLATASSDSSIKIIGLSNSASQHLATLKGHRGPVWQVAWAHPKFGSILASCSYDGQVIIW   84 (302)
Q Consensus         5 ~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~s~D~~i~iw   84 (302)
                      ..+.+|++.|++++|+|++++|++++.|+.|++|++..  .+.+..+.+|...|.+++|+++  +++|++++.|++|++|
T Consensus        26 ~~l~~h~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~--~~~~~~~~~h~~~v~~~~~~~~--~~~l~s~~~dg~i~iw  101 (369)
T 3zwl_B           26 IKLTGHERPLTQVKYNKEGDLLFSCSKDSSASVWYSLN--GERLGTLDGHTGTIWSIDVDCF--TKYCVTGSADYSIKLW  101 (369)
T ss_dssp             EEEECCSSCEEEEEECTTSCEEEEEESSSCEEEEETTT--CCEEEEECCCSSCEEEEEECTT--SSEEEEEETTTEEEEE
T ss_pred             EEEEEeeceEEEEEEcCCCCEEEEEeCCCEEEEEeCCC--chhhhhhhhcCCcEEEEEEcCC--CCEEEEEeCCCeEEEE
Confidence            34679999999999999999999999999999999865  3567788999999999999864  7899999999999999


Q ss_pred             EcCCCCceeEEEEecCCCCCeeEEEecCCCCCcEEEEEecC-----CcEEEEEecCCCCee---------eeeecccCCC
Q 022111           85 KEGNQNDWTQAHTFNDHKSSVNSIAWAPHELGLSLACGSSD-----GNISVFTATADGGWD---------TTRIDQAHPV  150 (302)
Q Consensus        85 d~~~~~~~~~~~~~~~h~~~i~~l~~~pd~~~~~l~sg~~d-----~~v~~~~~~~~~~~~---------~~~~~~~h~~  150 (302)
                      |+.+..   ....+. +...|.+++|+|+  +..+++++.+     +.|++|++.......         ...+ ..|..
T Consensus       102 d~~~~~---~~~~~~-~~~~v~~~~~~~~--~~~l~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~-~~~~~  174 (369)
T 3zwl_B          102 DVSNGQ---CVATWK-SPVPVKRVEFSPC--GNYFLAILDNVMKNPGSINIYEIERDSATHELTKVSEEPIHKI-ITHEG  174 (369)
T ss_dssp             ETTTCC---EEEEEE-CSSCEEEEEECTT--SSEEEEEECCBTTBCCEEEEEEEEECTTTCCEEEECSSCSEEE-ECCTT
T ss_pred             ECCCCc---EEEEee-cCCCeEEEEEccC--CCEEEEecCCccCCCCEEEEEEecCCccceeecccccceeeec-cCCcC
Confidence            997763   445555 8889999999998  6689999998     999999987543211         0111 13433


Q ss_pred             --CeEEEEeCCCCCCCceeecccCCCceeEEEeeCCCcEEEEEEecCccccccccccccCCCceeEEEeeCCCCCCccEE
Q 022111          151 --GVTSVSWAPAMAPGALVGLGLLDPVQKLASCGCDNTVKVWKMYNGIWKMDCFPALQMHSDWVRSVAWAPNLGLPKSTI  228 (302)
Q Consensus       151 --~v~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~D~~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~l  228 (302)
                        .+.+++|+|+              +..|++++.|+.|++||+++..   .....+..|...|.+++|+|++    ..|
T Consensus       175 ~~~~~~~~~~~~--------------~~~l~~~~~dg~i~i~d~~~~~---~~~~~~~~~~~~v~~~~~~~~~----~~l  233 (369)
T 3zwl_B          175 LDAATVAGWSTK--------------GKYIIAGHKDGKISKYDVSNNY---EYVDSIDLHEKSISDMQFSPDL----TYF  233 (369)
T ss_dssp             CCCEEEEEECGG--------------GCEEEEEETTSEEEEEETTTTT---EEEEEEECCSSCEEEEEECTTS----SEE
T ss_pred             ccceeEEEEcCC--------------CCEEEEEcCCCEEEEEECCCCc---EeEEEEecCCCceeEEEECCCC----CEE
Confidence              7888999885              4789999999999999998632   3445677899999999999985    789


Q ss_pred             EEEecCCeEEEEEeccCCccee----------------------------------------------------eeeecc
Q 022111          229 ASASQDGTVVIWTCAKEGEQWE----------------------------------------------------GRVLKD  256 (302)
Q Consensus       229 ~s~s~D~~i~iwd~~~~~~~~~----------------------------------------------------~~~~~~  256 (302)
                      ++++.|+.|++||++.......                                                    ...+..
T Consensus       234 ~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~  313 (369)
T 3zwl_B          234 ITSSRDTNSFLVDVSTLQVLKKYETDCPLNTAVITPLKEFIILGGGQEAKDVTTTSANEGKFEARFYHKIFEEEIGRVQG  313 (369)
T ss_dssp             EEEETTSEEEEEETTTCCEEEEEECSSCEEEEEECSSSSEEEEEECCC-------------CEEEEEETTTCCEEEEEEC
T ss_pred             EEecCCceEEEEECCCCceeeeecCCCCceeEEecCCCceEEEeecCCCceEEEEecCCCcceeEEEecCCCcchhheec
Confidence            9999999999999875321100                                                    001124


Q ss_pred             CCCcEEEEEEccCCCEEEEecCC-ceEEeeecC
Q 022111          257 FKTPVWSVSWSLTGNLLAVADAN-NVTLWKEAV  288 (302)
Q Consensus       257 ~~~~v~~~~~spdg~~la~~~~d-~i~~w~~~~  288 (302)
                      +...|.+++|+|+|++|++++.| .|++|+...
T Consensus       314 ~~~~v~~~~~s~~~~~l~s~~~dg~v~iw~~~~  346 (369)
T 3zwl_B          314 HFGPLNTVAISPQGTSYASGGEDGFIRLHHFEK  346 (369)
T ss_dssp             CSSCEEEEEECTTSSEEEEEETTSEEEEEEECH
T ss_pred             ccCcEEEEEECCCCCEEEEEcCCCeEEEEECcc
Confidence            56789999999999999999888 799999753

>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.8e-35  Score=272.66  Aligned_cols=249  Identities=13%  Similarity=0.132  Sum_probs=191.4

Q ss_pred             ccccccceeEEEEccC------CCEEEEeeCCCcEEEEeecCCCc---------eEEEEecCcccCeEEEEeeCCCCCCE
Q 022111            7 ETGHEDTVHDVAMDFY------GKRLATASSDSSIKIIGLSNSAS---------QHLATLKGHRGPVWQVAWAHPKFGSI   71 (302)
Q Consensus         7 ~~~h~~~v~~~~~s~~------~~~l~s~~~d~~v~lw~~~~~~~---------~~~~~~~~h~~~v~~v~~~~~~~~~~   71 (302)
                      +.+|.+.|.+++|+|+      +.+||+++.|++|+||++.....         .+...+.+|...|++++|+++   .+
T Consensus       203 l~~~~~~V~~v~wsp~~~~~~~~~~LAs~s~DgtvrlWd~~~~~~~~~~~~~~~~p~~~l~~h~~~v~sv~~s~~---~~  279 (524)
T 2j04_B          203 IVHSFGEVWDLKWHEGCHAPHLVGCLSFVSQEGTINFLEIIDNATDVHVFKMCEKPSLTLSLADSLITTFDFLSP---TT  279 (524)
T ss_dssp             EEECCCSEEEEEECSSCCCSSSSCEEEEEETTSCEEEEECCCCSSSSSEEECCCSCSEEECCTTTCEEEEEESSS---SE
T ss_pred             EEecCCcEEEEEECCCCCCCCCCceEEEEecCCeEEEEEcCCCccccccceeecCceEEEEcCCCCEEEEEecCC---Ce
Confidence            4567889999999996      57999999999999999864321         123467899999999999753   58


Q ss_pred             EEEEeCCCeEEEEEcCCCCceeEEEEecCCCCCeeEE--EecCCCCC-cEEEEEecCCcEEEEEecCCCCeeeeeecccC
Q 022111           72 LASCSYDGQVIIWKEGNQNDWTQAHTFNDHKSSVNSI--AWAPHELG-LSLACGSSDGNISVFTATADGGWDTTRIDQAH  148 (302)
Q Consensus        72 l~s~s~D~~i~iwd~~~~~~~~~~~~~~~h~~~i~~l--~~~pd~~~-~~l~sg~~d~~v~~~~~~~~~~~~~~~~~~~h  148 (302)
                      |++|+.|++|++||+++..  .+...+.+|...|.+|  +|+|+  + .+||+|+.|++|+|||++......  .+. +|
T Consensus       280 lasgs~DgtV~lWD~~~~~--~~~~~~~~H~~~V~sv~~~~s~~--g~~~laS~S~D~tvklWD~~~~~~~~--~~~-~~  352 (524)
T 2j04_B          280 VVCGFKNGFVAEFDLTDPE--VPSFYDQVHDSYILSVSTAYSDF--EDTVVSTVAVDGYFYIFNPKDIATTK--TTV-SR  352 (524)
T ss_dssp             EEEEETTSEEEEEETTBCS--SCSEEEECSSSCEEEEEEECCTT--SCCEEEEEETTSEEEEECGGGHHHHC--EEE-EE
T ss_pred             EEEEeCCCEEEEEECCCCC--CceEEeecccccEEEEEEEcCCC--CCeEEEEeccCCeEEEEECCCCCccc--ccc-cc
Confidence            9999999999999997642  2345677899999999  56776  4 689999999999999987532211  111 33


Q ss_pred             C--CCeEEEEeCCCCCCCceeecccCCCceeEEEeeCCCcEEEEEEecCccccccccccccCCCceeEEEeeCCCCCCcc
Q 022111          149 P--VGVTSVSWAPAMAPGALVGLGLLDPVQKLASCGCDNTVKVWKMYNGIWKMDCFPALQMHSDWVRSVAWAPNLGLPKS  226 (302)
Q Consensus       149 ~--~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~D~~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~  226 (302)
                      .  ..|.+++|+|++              ..|++++.|++|++||++++    .+...+.+|.+.|++|+|+|++    .
T Consensus       353 ~~~~~v~~v~fsp~~--------------~~l~s~~~d~tv~lwd~~~~----~~~~~l~gH~~~V~sva~Sp~g----~  410 (524)
T 2j04_B          353 FRGSNLVPVVYCPQI--------------YSYIYSDGASSLRAVPSRAA----FAVHPLVSRETTITAIGVSRLH----P  410 (524)
T ss_dssp             CSCCSCCCEEEETTT--------------TEEEEECSSSEEEEEETTCT----TCCEEEEECSSCEEEEECCSSC----C
T ss_pred             cccCcccceEeCCCc--------------CeEEEeCCCCcEEEEECccc----ccceeeecCCCceEEEEeCCCC----C
Confidence            3  247889999864              67999999999999999875    3455678999999999999996    6


Q ss_pred             EEEEEecCCeEEEEEeccCC-------c-------cee------------------------e---eeeccCCCcEEEEE
Q 022111          227 TIASASQDGTVVIWTCAKEG-------E-------QWE------------------------G---RVLKDFKTPVWSVS  265 (302)
Q Consensus       227 ~l~s~s~D~~i~iwd~~~~~-------~-------~~~------------------------~---~~~~~~~~~v~~~~  265 (302)
                      .|++|+.|++|++||+....       .       .+.                        .   ..+.++..+|++|+
T Consensus       411 ~l~Sgs~Dgtv~lwd~~~~~~~~~~~~~~~~~~~~v~~v~~sp~g~~~~~~~~~~~~~~~~~g~~~~~l~gh~~~V~~Va  490 (524)
T 2j04_B          411 MVLAGSADGSLIITNAARRLLHGIKNSSATQKSLRLWKWDYSIKDDKYRIDSSYEVYPLTVNDVSKAKIDAHGINITCTK  490 (524)
T ss_dssp             BCEEEETTTEEECCBSCSSTTTCC------CCCCEEEECBCCSSSCEEEECCCCCCCC-------------CCCSCCCEE
T ss_pred             eEEEEECCCEEEEEechHhhccccccCccceeeeEEEEeccCCCCCeEEccCCceecccccCCcceeeecCCCceEEEEE
Confidence            79999999999999863210       0       000                        0   01124556899999


Q ss_pred             EccCCC---EEEEecCC-ceEEeeec
Q 022111          266 WSLTGN---LLAVADAN-NVTLWKEA  287 (302)
Q Consensus       266 ~spdg~---~la~~~~d-~i~~w~~~  287 (302)
                      |||++.   .||+|+.+ .|+||+..
T Consensus       491 fsp~~~~~~~lAsg~~~g~vrlw~l~  516 (524)
T 2j04_B          491 WNETSAGGKCYAFSNSAGLLTLEYLS  516 (524)
T ss_dssp             ECCSTTTTTEEEEECTTSEEEEEECS
T ss_pred             CCCCCCccHHHHhhccCceEEEEEcc
Confidence            999964   99999887 69999964

>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A

Probab=100.00  E-value=7e-34  Score=254.47  Aligned_cols=261  Identities=16%  Similarity=0.180  Sum_probs=201.7

Q ss_pred             cceeEEEEccCCCEEEEeeCCCcEEEEeecCCCceEEEEecCcccCeEEEEeeCCCCCCEEEEEeCCCeEEEEEcCCCCc
Q 022111           12 DTVHDVAMDFYGKRLATASSDSSIKIIGLSNSASQHLATLKGHRGPVWQVAWAHPKFGSILASCSYDGQVIIWKEGNQND   91 (302)
Q Consensus        12 ~~v~~~~~s~~~~~l~s~~~d~~v~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~s~D~~i~iwd~~~~~~   91 (302)
                      ..+....|++++++|++|+.|+.|++|++..  .+....+.+|...|++++|+++  +++|++++.|++|++||+++.. 
T Consensus        98 ~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~--~~~~~~~~~h~~~v~~~~~~~~--~~~l~s~s~d~~i~iwd~~~~~-  172 (420)
T 3vl1_A           98 DYTAVDTAKLQMRRFILGTTEGDIKVLDSNF--NLQREIDQAHVSEITKLKFFPS--GEALISSSQDMQLKIWSVKDGS-  172 (420)
T ss_dssp             CEEEEEEECSSSCEEEEEETTSCEEEECTTS--CEEEEETTSSSSCEEEEEECTT--SSEEEEEETTSEEEEEETTTCC-
T ss_pred             CceEEEEEecCCCEEEEEECCCCEEEEeCCC--cceeeecccccCccEEEEECCC--CCEEEEEeCCCeEEEEeCCCCc-
Confidence            3444557899999999999999999999864  3456667899999999999864  7899999999999999997653 


Q ss_pred             eeEEEEecCCCCCeeEEEecCCCCCcEEEEEecCCcEEEEEecCCCCeeeeeecccCCCCeEEEEeCCCCCC-------C
Q 022111           92 WTQAHTFNDHKSSVNSIAWAPHELGLSLACGSSDGNISVFTATADGGWDTTRIDQAHPVGVTSVSWAPAMAP-------G  164 (302)
Q Consensus        92 ~~~~~~~~~h~~~i~~l~~~pd~~~~~l~sg~~d~~v~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~-------~  164 (302)
                        ....+.+|...|.+++|+|+  +.+|++++.|+.|++||++.............|...+.++.|.|....       .
T Consensus       173 --~~~~~~~h~~~v~~~~~~~~--~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~  248 (420)
T 3vl1_A          173 --NPRTLIGHRATVTDIAIIDR--GRNVLSASLDGTIRLWECGTGTTIHTFNRKENPHDGVNSIALFVGTDRQLHEISTS  248 (420)
T ss_dssp             --CCEEEECCSSCEEEEEEETT--TTEEEEEETTSCEEEEETTTTEEEEEECBTTBTTCCEEEEEEEECCCSSCGGGCCC
T ss_pred             --CceEEcCCCCcEEEEEEcCC--CCEEEEEcCCCcEEEeECCCCceeEEeecCCCCCCCccEEEEecCCcceeeecccC
Confidence              45677889999999999998  668999999999999998754332222222246677888888765322       2


Q ss_pred             ceeecccCCCceeEEEeeCCCcEEEEEEecCccccccccccccCCCceeEEEeeCCCCCCccEEEEEecCCeEEEEEecc
Q 022111          165 ALVGLGLLDPVQKLASCGCDNTVKVWKMYNGIWKMDCFPALQMHSDWVRSVAWAPNLGLPKSTIASASQDGTVVIWTCAK  244 (302)
Q Consensus       165 ~~~~~~~~~~~~~l~s~~~D~~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~l~s~s~D~~i~iwd~~~  244 (302)
                      .+..+...+++.+|++++.|+.|++||++++...   .....+|...|.+++|+|++   ..+|++|+.|+.|++||++.
T Consensus       249 ~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~---~~~~~~~~~~v~~~~~~~~~---~~~l~~g~~dg~i~vwd~~~  322 (420)
T 3vl1_A          249 KKNNLEFGTYGKYVIAGHVSGVITVHNVFSKEQT---IQLPSKFTCSCNSLTVDGNN---ANYIYAGYENGMLAQWDLRS  322 (420)
T ss_dssp             CCCTTCSSCTTEEEEEEETTSCEEEEETTTCCEE---EEECCTTSSCEEEEEECSSC---TTEEEEEETTSEEEEEETTC
T ss_pred             cccceEEcCCCCEEEEEcCCCeEEEEECCCCcee---EEcccccCCCceeEEEeCCC---CCEEEEEeCCCeEEEEEcCC
Confidence            2333445567889999999999999999876321   12235688999999999996   23899999999999999986


Q ss_pred             CCcceeeeeeccCCCcEEEEEEccCCCEEEEecCC-ceEEeeecCC
Q 022111          245 EGEQWEGRVLKDFKTPVWSVSWSLTGNLLAVADAN-NVTLWKEAVD  289 (302)
Q Consensus       245 ~~~~~~~~~~~~~~~~v~~~~~spdg~~la~~~~d-~i~~w~~~~~  289 (302)
                      .... ...+...+..+|.++.| |++++|++++.| .|++|+....
T Consensus       323 ~~~~-~~~~~~~~~~~v~~~~~-~~~~~l~s~~~d~~v~iw~~~~~  366 (420)
T 3vl1_A          323 PECP-VGEFLINEGTPINNVYF-AAGALFVSSGFDTSIKLDIISDP  366 (420)
T ss_dssp             TTSC-SEEEEESTTSCEEEEEE-ETTEEEEEETTTEEEEEEEECCT
T ss_pred             CcCc-hhhhhccCCCCceEEEe-CCCCEEEEecCCccEEEEeccCC
Confidence            4321 12232336677888855 578899999988 7999998653

>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C

Probab=100.00  E-value=9.5e-34  Score=249.09  Aligned_cols=256  Identities=18%  Similarity=0.162  Sum_probs=203.1

Q ss_pred             ccccccccceeEEEEccCCCEEEEeeCCCcEEEEeecCCCceEEEEecCcccCeEEEEeeCCCCCCEEEEEeCCCeEEEE
Q 022111            5 KIETGHEDTVHDVAMDFYGKRLATASSDSSIKIIGLSNSASQHLATLKGHRGPVWQVAWAHPKFGSILASCSYDGQVIIW   84 (302)
Q Consensus         5 ~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~s~D~~i~iw   84 (302)
                      ..+.+|...|++++|+|++++|++++.|++|++|++..........+..|...|.+++|+++  +++|++++.|+.+++|
T Consensus        46 ~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~--~~~l~~~~~d~~v~i~  123 (372)
T 1k8k_C           46 HELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKGRTWKPTLVILRINRAARCVRWAPN--EKKFAVGSGSRVISIC  123 (372)
T ss_dssp             EEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEEEETTEEEEEEECCCCSSCEEEEEECTT--SSEEEEEETTSSEEEE
T ss_pred             eeecCCCCcccEEEEeCCCCEEEEEcCCCeEEEEECCCCeeeeeEEeecCCCceeEEEECCC--CCEEEEEeCCCEEEEE
Confidence            34568999999999999999999999999999999976543444556789999999999864  7899999999999999


Q ss_pred             EcCCCCceeEEEE-ecCCCCCeeEEEecCCCCCcEEEEEecCCcEEEEEecCC----------------CCeeeeeeccc
Q 022111           85 KEGNQNDWTQAHT-FNDHKSSVNSIAWAPHELGLSLACGSSDGNISVFTATAD----------------GGWDTTRIDQA  147 (302)
Q Consensus        85 d~~~~~~~~~~~~-~~~h~~~i~~l~~~pd~~~~~l~sg~~d~~v~~~~~~~~----------------~~~~~~~~~~~  147 (302)
                      |++....+..... ...|...|.+++|+|+  +.+|++++.|+.|++||+...                .......+. .
T Consensus       124 d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~--~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~  200 (372)
T 1k8k_C          124 YFEQENDWWVCKHIKKPIRSTVLSLDWHPN--SVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESS-S  200 (372)
T ss_dssp             EEETTTTEEEEEEECTTCCSCEEEEEECTT--SSEEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECC-C
T ss_pred             EecCCCcceeeeeeecccCCCeeEEEEcCC--CCEEEEEcCCCCEEEEEcccccccccccccccccccchhhheEecC-C
Confidence            9977654333333 3668999999999998  669999999999999996411                111222332 6


Q ss_pred             CCCCeEEEEeCCCCCCCceeecccCCCceeEEEeeCCCcEEEEEEecCccccccccccccCCCceeEEEeeCCCCCCccE
Q 022111          148 HPVGVTSVSWAPAMAPGALVGLGLLDPVQKLASCGCDNTVKVWKMYNGIWKMDCFPALQMHSDWVRSVAWAPNLGLPKST  227 (302)
Q Consensus       148 h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~D~~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~  227 (302)
                      |...+.+++|+|++              .+|++++.|+.|++||++++    .++..+..|...|.+++|+|++    .+
T Consensus       201 ~~~~v~~~~~~~~~--------------~~l~~~~~d~~i~i~d~~~~----~~~~~~~~~~~~v~~~~~~~~~----~~  258 (372)
T 1k8k_C          201 SCGWVHGVCFSANG--------------SRVAWVSHDSTVCLADADKK----MAVATLASETLPLLAVTFITES----SL  258 (372)
T ss_dssp             CSSCEEEEEECSSS--------------SEEEEEETTTEEEEEEGGGT----TEEEEEECSSCCEEEEEEEETT----EE
T ss_pred             CCCeEEEEEECCCC--------------CEEEEEeCCCEEEEEECCCC----ceeEEEccCCCCeEEEEEecCC----CE
Confidence            88889999999863              78999999999999999876    3456677899999999999985    66


Q ss_pred             EEEEecCCeEEEEEeccCCccee--------------------------------------eeeeccCCCcEEEEEEc-c
Q 022111          228 IASASQDGTVVIWTCAKEGEQWE--------------------------------------GRVLKDFKTPVWSVSWS-L  268 (302)
Q Consensus       228 l~s~s~D~~i~iwd~~~~~~~~~--------------------------------------~~~~~~~~~~v~~~~~s-p  268 (302)
                      |++| .|+.|++|+++.....|.                                      ..+..+|..+|.+++|+ +
T Consensus       259 l~~~-~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~  337 (372)
T 1k8k_C          259 VAAG-HDCFPVLFTYDSAAGKLSFGGRLDVPKQSSQRGLTARERFQNLDKKASSEGSAAAGAGLDSLHKNSVSQISVLSG  337 (372)
T ss_dssp             EEEE-TTSSCEEEEEETTTTEEEECCCCCCC--------CHHHHHHHCCCCC---------CCCSSSSSSCEEEEEEEES
T ss_pred             EEEE-eCCeEEEEEccCcCceEEEeeccCccccchhhhcchhhhhhhcccccccccCccccccccccccCCcceeEEecC
Confidence            7666 999999999986111100                                      11224778899999966 6


Q ss_pred             CC---CEEEEecCC-ceEEeeecC
Q 022111          269 TG---NLLAVADAN-NVTLWKEAV  288 (302)
Q Consensus       269 dg---~~la~~~~d-~i~~w~~~~  288 (302)
                      +|   ++|++++.| .|++|+...
T Consensus       338 ~g~~~~~l~s~~~Dg~i~~W~~~~  361 (372)
T 1k8k_C          338 GKAKCSQFCTTGMDGGMSIWDVRS  361 (372)
T ss_dssp             TTTSCSEEEEEETTSEEEEEEHHH
T ss_pred             CCcceeeEEEecCCCceEEEEecC
Confidence            77   999999999 799999753

>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A

Probab=100.00  E-value=5.2e-35  Score=256.19  Aligned_cols=252  Identities=16%  Similarity=0.238  Sum_probs=199.1

Q ss_pred             cccceeEEEEccC----CCEEEEeeCCCcEEEEeecCCCceEEEEecCcccCeEEEEeeCCCCCCEEEEEeCCCeEEEEE
Q 022111           10 HEDTVHDVAMDFY----GKRLATASSDSSIKIIGLSNSASQHLATLKGHRGPVWQVAWAHPKFGSILASCSYDGQVIIWK   85 (302)
Q Consensus        10 h~~~v~~~~~s~~----~~~l~s~~~d~~v~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~s~D~~i~iwd   85 (302)
                      |...|++++|+++    +++|++|+.|++|++||+..  .+.+..+.+|...|.+++|++. ++++|++++.|++|++||
T Consensus        68 ~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~v~d~~~--~~~~~~~~~~~~~i~~~~~~~~-~~~~l~s~~~dg~i~iwd  144 (366)
T 3k26_A           68 ADENFYTCAWTYDSNTSHPLLAVAGSRGIIRIINPIT--MQCIKHYVGHGNAINELKFHPR-DPNLLLSVSKDHALRLWN  144 (366)
T ss_dssp             TTCCEEEEEEEECTTTCCEEEEEEETTCEEEEECTTT--CCEEEEEESCCSCEEEEEECSS-CTTEEEEEETTSCEEEEE
T ss_pred             CCCcEEEEEeccCCCCCCCEEEEecCCCEEEEEEchh--ceEeeeecCCCCcEEEEEECCC-CCCEEEEEeCCCeEEEEE
Confidence            6688999999999    67999999999999999865  3456778899999999999862 478999999999999999


Q ss_pred             cCCCCceeEEEEe---cCCCCCeeEEEecCCCCCcEEEEEecCCcEEEEEecCCCCee----------------------
Q 022111           86 EGNQNDWTQAHTF---NDHKSSVNSIAWAPHELGLSLACGSSDGNISVFTATADGGWD----------------------  140 (302)
Q Consensus        86 ~~~~~~~~~~~~~---~~h~~~i~~l~~~pd~~~~~l~sg~~d~~v~~~~~~~~~~~~----------------------  140 (302)
                      +++..   ....+   ..|...|.+++|+|+  +.+|++++.|+.|++||++......                      
T Consensus       145 ~~~~~---~~~~~~~~~~~~~~v~~~~~~~~--~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  219 (366)
T 3k26_A          145 IQTDT---LVAIFGGVEGHRDEVLSADYDLL--GEKIMSCGMDHSLKLWRINSKRMMNAIKESYDYNPNKTNRPFISQKI  219 (366)
T ss_dssp             TTTTE---EEEEECSTTSCSSCEEEEEECTT--SSEEEEEETTSCEEEEESCSHHHHHHHHHHHTCCGGGCSSCCCCEEE
T ss_pred             eecCe---EEEEecccccccCceeEEEECCC--CCEEEEecCCCCEEEEECCCCccccccceeEEecCCCCcccccceee
Confidence            97653   44555   679999999999997  6699999999999999986421100                      


Q ss_pred             ---eeeecccCCCCeEEEEeCCCCCCCceeecccCCCceeEEEeeCCCcEEEEEEecCccc----------ccccccccc
Q 022111          141 ---TTRIDQAHPVGVTSVSWAPAMAPGALVGLGLLDPVQKLASCGCDNTVKVWKMYNGIWK----------MDCFPALQM  207 (302)
Q Consensus       141 ---~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~D~~v~iwd~~~~~~~----------~~~~~~~~~  207 (302)
                         .......|...|.++.|+.                .+|++++.|+.|++||+.+....          ...+..+.+
T Consensus       220 ~~~~~~~~~~~~~~v~~~~~~~----------------~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~  283 (366)
T 3k26_A          220 HFPDFSTRDIHRNYVDCVRWLG----------------DLILSKSCENAIVCWKPGKMEDDIDKIKPSESNVTILGRFDY  283 (366)
T ss_dssp             CCCSEEECSSCSSCCCEEEEET----------------TEEEEECSSSEEEEEEESSTTCCGGGCCTTCCCEEEEEEEEC
T ss_pred             ccCccccccCCcceEEEEEEcC----------------CEEEEEecCCEEEEEeCCCccccccccccCCcchheeccccc
Confidence               0001113777888888862                58999999999999999765321          123456678


Q ss_pred             CCCceeEEEeeCCCCCCccEEEEEecCCeEEEEEeccCCcce-eeeeeccC--CCcEEEEEEccCCCEEEEecCC-ceEE
Q 022111          208 HSDWVRSVAWAPNLGLPKSTIASASQDGTVVIWTCAKEGEQW-EGRVLKDF--KTPVWSVSWSLTGNLLAVADAN-NVTL  283 (302)
Q Consensus       208 h~~~v~~v~~~p~~~~~~~~l~s~s~D~~i~iwd~~~~~~~~-~~~~~~~~--~~~v~~~~~spdg~~la~~~~d-~i~~  283 (302)
                      |...|.+++|+|+.  ++.+|++|+.|+.|++||++...... ....+..+  ..+|.+++|+|+|++|++++.| .|++
T Consensus       284 ~~~~v~~~~~s~~~--~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~i  361 (366)
T 3k26_A          284 SQCDIWYMRFSMDF--WQKMLALGNQVGKLYVWDLEVEDPHKAKCTTLTHHKCGAAIRQTSFSRDSSILIAVCDDASIWR  361 (366)
T ss_dssp             SSCCSSCCCCEECT--TSSEEEEECTTSCEEEEECCSSSGGGCEEEEECCTTCCSCEEEEEECTTSSEEEEEETTSEEEE
T ss_pred             cCCcEEEEEEcCCC--CCcEEEEEecCCcEEEEECCCCCCccccceEEcccccCCceEEEEeCCCCCeEEEEeCCCEEEE
Confidence            99999999999982  13789999999999999998643211 11223444  6889999999999999999998 7999


Q ss_pred             eeec
Q 022111          284 WKEA  287 (302)
Q Consensus       284 w~~~  287 (302)
                      |+..
T Consensus       362 wd~~  365 (366)
T 3k26_A          362 WDRL  365 (366)
T ss_dssp             EEC-
T ss_pred             EEec
Confidence            9964

>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.1e-34  Score=259.00  Aligned_cols=254  Identities=17%  Similarity=0.279  Sum_probs=204.5

Q ss_pred             cccccceeEEEEccCCCEEEEeeCCCcEEEEeecCC--CceEEEEecCcccCeEEEEeeCCCCCCEEEEEeCCCeEEEEE
Q 022111            8 TGHEDTVHDVAMDFYGKRLATASSDSSIKIIGLSNS--ASQHLATLKGHRGPVWQVAWAHPKFGSILASCSYDGQVIIWK   85 (302)
Q Consensus         8 ~~h~~~v~~~~~s~~~~~l~s~~~d~~v~lw~~~~~--~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~s~D~~i~iwd   85 (302)
                      ..|...|++++|+|++++|++++.|+.|++|++...  ..+.+..+.+|...|++++|+++ .+++|++++.|++|++||
T Consensus        64 ~~~~~~v~~~~~s~~~~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~-~~~~l~s~~~dg~v~iwd  142 (416)
T 2pm9_A           64 LQVDSKFNDLDWSHNNKIIAGALDNGSLELYSTNEANNAINSMARFSNHSSSVKTVKFNAK-QDNVLASGGNNGEIFIWD  142 (416)
T ss_dssp             CCCSSCEEEEEECSSSSCEEEEESSSCEEEECCSSTTSCCCEEEECCCSSSCCCEEEECSS-STTBEEEECSSSCEEBCB
T ss_pred             EecCCceEEEEECCCCCeEEEEccCCeEEEeecccccccccchhhccCCccceEEEEEcCC-CCCEEEEEcCCCeEEEEE
Confidence            368899999999999999999999999999998651  12366788899999999999864 378999999999999999


Q ss_pred             cCCCC------ceeEEEEecCCCCCeeEEEecCCCCCcEEEEEecCCcEEEEEecCCCCeeeeeecc-----cCCCCeEE
Q 022111           86 EGNQN------DWTQAHTFNDHKSSVNSIAWAPHELGLSLACGSSDGNISVFTATADGGWDTTRIDQ-----AHPVGVTS  154 (302)
Q Consensus        86 ~~~~~------~~~~~~~~~~h~~~i~~l~~~pd~~~~~l~sg~~d~~v~~~~~~~~~~~~~~~~~~-----~h~~~v~~  154 (302)
                      ++...      .......+..|...|.+++|+|+. +.+|++++.|+.|++||+.....  ...+..     +|...+.+
T Consensus       143 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~~l~~~~~dg~v~iwd~~~~~~--~~~~~~~~~~~~~~~~v~~  219 (416)
T 2pm9_A          143 MNKCTESPSNYTPLTPGQSMSSVDEVISLAWNQSL-AHVFASAGSSNFASIWDLKAKKE--VIHLSYTSPNSGIKQQLSV  219 (416)
T ss_dssp             TTTTSSCTTTCCCBCCCCSCCSSCCCCEEEECSSC-TTEEEEESSSSCEEEEETTTTEE--EEEECCCCCSSCCCCCEEE
T ss_pred             CCCCccccccccccccccccCCCCCeeEEEeCCCC-CcEEEEEcCCCCEEEEECCCCCc--ceEEeccccccccCCceEE
Confidence            97654      212223346799999999999973 45899999999999999875422  222221     12678999


Q ss_pred             EEeCCCCCCCceeecccCCCceeEEEeeCCC---cEEEEEEecCccccccccccc-cCCCceeEEEeeC-CCCCCccEEE
Q 022111          155 VSWAPAMAPGALVGLGLLDPVQKLASCGCDN---TVKVWKMYNGIWKMDCFPALQ-MHSDWVRSVAWAP-NLGLPKSTIA  229 (302)
Q Consensus       155 ~~~~~~~~~~~~~~~~~~~~~~~l~s~~~D~---~v~iwd~~~~~~~~~~~~~~~-~h~~~v~~v~~~p-~~~~~~~~l~  229 (302)
                      ++|+|++             ..+|++++.|+   .|++||++++.   .....+. +|...|.+++|+| +    +.+|+
T Consensus       220 ~~~~~~~-------------~~~l~~~~~d~~~~~i~~~d~~~~~---~~~~~~~~~~~~~v~~~~~s~~~----~~~l~  279 (416)
T 2pm9_A          220 VEWHPKN-------------STRVATATGSDNDPSILIWDLRNAN---TPLQTLNQGHQKGILSLDWCHQD----EHLLL  279 (416)
T ss_dssp             EEECSSC-------------TTEEEEEECCSSSCCCCEEETTSTT---SCSBCCCSCCSSCEEEEEECSSC----SSCEE
T ss_pred             EEECCCC-------------CCEEEEEECCCCCceEEEEeCCCCC---CCcEEeecCccCceeEEEeCCCC----CCeEE
Confidence            9999864             25899999998   99999998753   2345666 8999999999999 5    47899


Q ss_pred             EEecCCeEEEEEeccCCcceeeeeeccCCCcEEEEEEccCC-CEEEEecCC-ceEEeeecC
Q 022111          230 SASQDGTVVIWTCAKEGEQWEGRVLKDFKTPVWSVSWSLTG-NLLAVADAN-NVTLWKEAV  288 (302)
Q Consensus       230 s~s~D~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~spdg-~~la~~~~d-~i~~w~~~~  288 (302)
                      +++.|+.|++||++....   ...+..+...|.+++|+|++ ++|++++.| .|++|+...
T Consensus       280 s~~~dg~v~~wd~~~~~~---~~~~~~~~~~v~~~~~s~~~~~~l~s~~~d~~i~iw~~~~  337 (416)
T 2pm9_A          280 SSGRDNTVLLWNPESAEQ---LSQFPARGNWCFKTKFAPEAPDLFACASFDNKIEVQTLQN  337 (416)
T ss_dssp             EEESSSEEEEECSSSCCE---EEEEECSSSCCCCEEECTTCTTEEEECCSSSEEEEEESCC
T ss_pred             EEeCCCCEEEeeCCCCcc---ceeecCCCCceEEEEECCCCCCEEEEEecCCcEEEEEccC
Confidence            999999999999876432   23345678889999999999 899999888 799999754

>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B

Probab=100.00  E-value=1.6e-34  Score=260.71  Aligned_cols=258  Identities=19%  Similarity=0.338  Sum_probs=205.8

Q ss_pred             ccccccceeEEEEccC-CCEEEEeeCCCcEEEEeecC--------CCceEEEEecCcccCeEEEEeeCCCCCC-EEEEEe
Q 022111            7 ETGHEDTVHDVAMDFY-GKRLATASSDSSIKIIGLSN--------SASQHLATLKGHRGPVWQVAWAHPKFGS-ILASCS   76 (302)
Q Consensus         7 ~~~h~~~v~~~~~s~~-~~~l~s~~~d~~v~lw~~~~--------~~~~~~~~~~~h~~~v~~v~~~~~~~~~-~l~s~s   76 (302)
                      ..+|.+.|++++|+|+ +++||+++.||.|++|++..        .....+..+.+|...|++++|++.  +. +|++|+
T Consensus       124 ~~~h~~~v~~l~~~p~~~~~lat~~~dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~--~~~~l~s~~  201 (430)
T 2xyi_A          124 KINHEGEVNRARYMPQNACVIATKTPSSDVLVFDYTKHPSKPEPSGECQPDLRLRGHQKEGYGLSWNPN--LNGYLLSAS  201 (430)
T ss_dssp             EEEESSCCSEEEEETTEEEEEEEECSSSCEEEEEGGGSCSSCCTTCCCCCSEEEECCSSCCCCEEECTT--STTEEEEEC
T ss_pred             EEcCCCcEEEEEECCCCCcEEEEECCCCcEEEEECCCcccccCccccCCCcEEecCCCCCeEEEEeCCC--CCCeEEEEe
Confidence            3479999999999997 68999999999999999864        123456778899999999999864  45 999999


Q ss_pred             CCCeEEEEEcCCCCc----eeEEEEecCCCCCeeEEEecCCCCCcEEEEEecCCcEEEEEecCCCCe-eeeeecccCCCC
Q 022111           77 YDGQVIIWKEGNQND----WTQAHTFNDHKSSVNSIAWAPHELGLSLACGSSDGNISVFTATADGGW-DTTRIDQAHPVG  151 (302)
Q Consensus        77 ~D~~i~iwd~~~~~~----~~~~~~~~~h~~~i~~l~~~pd~~~~~l~sg~~d~~v~~~~~~~~~~~-~~~~~~~~h~~~  151 (302)
                      .|++|++||+.....    ......+..|...|.+++|+|+. +.++++++.|+.|++||++..... ....+ ..|...
T Consensus       202 ~dg~i~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~-~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~-~~~~~~  279 (430)
T 2xyi_A          202 DDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLH-ESLFGSVADDQKLMIWDTRNNNTSKPSHTV-DAHTAE  279 (430)
T ss_dssp             TTSCEEEEETTSCCBGGGEEECSEEECCCSSCEEEEEECSSC-TTEEEEEETTSEEEEEETTCSCSSSCSEEE-ECCSSC
T ss_pred             CCCeEEEEeCCCCCCCCceeccceeecCCCCCEeeeEEeCCC-CCEEEEEeCCCeEEEEECCCCCCCcceeEe-ecCCCC
Confidence            999999999976321    12245677899999999999953 568999999999999999854311 12233 378889


Q ss_pred             eEEEEeCCCCCCCceeecccCCCceeEEEeeCCCcEEEEEEecCccccccccccccCCCceeEEEeeCCCCCCccEEEEE
Q 022111          152 VTSVSWAPAMAPGALVGLGLLDPVQKLASCGCDNTVKVWKMYNGIWKMDCFPALQMHSDWVRSVAWAPNLGLPKSTIASA  231 (302)
Q Consensus       152 v~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~D~~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~l~s~  231 (302)
                      |++++|+|.+             ..+|++|+.|+.|++||++...   ..+..+.+|...|.+++|+|++   ...|+++
T Consensus       280 v~~i~~~p~~-------------~~~l~tg~~dg~v~vwd~~~~~---~~~~~~~~h~~~v~~i~~sp~~---~~~l~s~  340 (430)
T 2xyi_A          280 VNCLSFNPYS-------------EFILATGSADKTVALWDLRNLK---LKLHSFESHKDEIFQVQWSPHN---ETILASS  340 (430)
T ss_dssp             EEEEEECSSC-------------TTEEEEEETTSEEEEEETTCTT---SCSEEEECCSSCEEEEEECSSC---TTEEEEE
T ss_pred             eEEEEeCCCC-------------CCEEEEEeCCCeEEEEeCCCCC---CCeEEeecCCCCEEEEEECCCC---CCEEEEE
Confidence            9999999964             2478999999999999998642   3455677899999999999986   3579999


Q ss_pred             ecCCeEEEEEeccCCcc-----------eeeeeeccCCCcEEEEEEccCCC-EEEEecCC-ceEEeeec
Q 022111          232 SQDGTVVIWTCAKEGEQ-----------WEGRVLKDFKTPVWSVSWSLTGN-LLAVADAN-NVTLWKEA  287 (302)
Q Consensus       232 s~D~~i~iwd~~~~~~~-----------~~~~~~~~~~~~v~~~~~spdg~-~la~~~~d-~i~~w~~~  287 (302)
                      +.|+.|+|||+......           .......+|...|.+++|+|++. +|++++.| .|++|+..
T Consensus       341 ~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s~dg~i~iw~~~  409 (430)
T 2xyi_A          341 GTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWIICSVSEDNIMQVWQMA  409 (430)
T ss_dssp             ETTSCCEEEEGGGTTCCCCHHHHHHCCTTEEEECCCCSSCEEEEEECSSSTTEEEEEETTSEEEEEEEC
T ss_pred             eCCCcEEEEeCCCCccccCccccccCCcceEEEcCCCCCCceEEEECCCCCCEEEEEECCCCEEEeEcc
Confidence            99999999999863210           11123356778899999999998 88888887 69999974

>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}

Probab=100.00  E-value=1.7e-34  Score=255.02  Aligned_cols=258  Identities=16%  Similarity=0.187  Sum_probs=191.1

Q ss_pred             ccccccccceeEEEEccCCCEEEEeeCCCcEEEEeecCCC-ceEEEEecCcccCeEEEEeeCCCCCCEEEEEeCCCeEEE
Q 022111            5 KIETGHEDTVHDVAMDFYGKRLATASSDSSIKIIGLSNSA-SQHLATLKGHRGPVWQVAWAHPKFGSILASCSYDGQVII   83 (302)
Q Consensus         5 ~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~lw~~~~~~-~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~s~D~~i~i   83 (302)
                      ..+.+|...|++++|+|++++|++++.|++|++||+.... ......+.+|...|.+++|+++  +++|++++.|++|++
T Consensus        49 ~~~~~h~~~v~~~~~s~~~~~l~s~s~d~~v~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~~~l~~~~~d~~i~i  126 (377)
T 3dwl_C           49 RTFSDHDKIVTCVDWAPKSNRIVTCSQDRNAYVYEKRPDGTWKQTLVLLRLNRAATFVRWSPN--EDKFAVGSGARVISV  126 (377)
T ss_dssp             CCBCCCSSCEEEEEECTTTCCEEEEETTSSEEEC------CCCCEEECCCCSSCEEEEECCTT--SSCCEEEESSSCEEE
T ss_pred             EEEecCCceEEEEEEeCCCCEEEEEeCCCeEEEEEcCCCCceeeeeEecccCCceEEEEECCC--CCEEEEEecCCeEEE
Confidence            4567899999999999999999999999999999997543 2345677889999999999864  789999999999999


Q ss_pred             EEcCCCCceeEEEEecC-CCCCeeEEEecCCCCCcEEEEEecCCcEEEEEecCCC--------------C-eeeeeeccc
Q 022111           84 WKEGNQNDWTQAHTFND-HKSSVNSIAWAPHELGLSLACGSSDGNISVFTATADG--------------G-WDTTRIDQA  147 (302)
Q Consensus        84 wd~~~~~~~~~~~~~~~-h~~~i~~l~~~pd~~~~~l~sg~~d~~v~~~~~~~~~--------------~-~~~~~~~~~  147 (302)
                      ||++....+.....+.. |...|.+++|+|+  +.+|++++.|+.|++||+....              . ....... .
T Consensus       127 wd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~--~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~  203 (377)
T 3dwl_C          127 CYFEQENDWWVSKHLKRPLRSTILSLDWHPN--NVLLAAGCADRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEY-P  203 (377)
T ss_dssp             CCC-----CCCCEEECSSCCSCEEEEEECTT--SSEEEEEESSSCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECC-C
T ss_pred             EEECCcccceeeeEeecccCCCeEEEEEcCC--CCEEEEEeCCCEEEEEEEEecccCCCccccccccccchhhhhhcc-c
Confidence            99977643334567777 9999999999998  6799999999999999985221              0 0111111 6


Q ss_pred             CCCCeEEEEeCCCCCCCceeecccCCCceeEEEeeCCCcEEEEEEecCccccccccccccCCCceeEEEeeCCCCCCccE
Q 022111          148 HPVGVTSVSWAPAMAPGALVGLGLLDPVQKLASCGCDNTVKVWKMYNGIWKMDCFPALQMHSDWVRSVAWAPNLGLPKST  227 (302)
Q Consensus       148 h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~D~~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~  227 (302)
                      |...|.+++|+|++              .+|++++.|+.|++||+.++......+..+.+|...|.+++|+|++    .+
T Consensus       204 ~~~~v~~~~~sp~~--------------~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~----~~  265 (377)
T 3dwl_C          204 SGGWVHAVGFSPSG--------------NALAYAGHDSSVTIAYPSAPEQPPRALITVKLSQLPLRSLLWANES----AI  265 (377)
T ss_dssp             CSSSEEEEEECTTS--------------SCEEEEETTTEEC-CEECSTTSCEEECCCEECSSSCEEEEEEEETT----EE
T ss_pred             CCceEEEEEECCCC--------------CEEEEEeCCCcEEEEECCCCCCcceeeEeecCCCCceEEEEEcCCC----CE
Confidence            88889999999864              7899999999999999988743222366788999999999999995    78


Q ss_pred             EEEEecCCeEEEEEeccCCcc----ee------e---------------------------------------eeeccCC
Q 022111          228 IASASQDGTVVIWTCAKEGEQ----WE------G---------------------------------------RVLKDFK  258 (302)
Q Consensus       228 l~s~s~D~~i~iwd~~~~~~~----~~------~---------------------------------------~~~~~~~  258 (302)
                      |++++.|+.+ +|+.......    ..      .                                       .+...|.
T Consensus       266 l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~H~  344 (377)
T 3dwl_C          266 VAAGYNYSPI-LLQGNESGWAHTRDLDAGTSKTSFTHTGNTGEGREEEGPVSFTALRSTFRNMDLKGSSQSISSLPTVHQ  344 (377)
T ss_dssp             EEEESSSSEE-EECCCC---CCSBCCCSCCCCCCBSSSSSBCCCCCC-------------------------CCCSSSCS
T ss_pred             EEEEcCCcEE-EEEeCCCceEEEeeecccccccccccccccccccccccccccccccccccchhhccccccccccCcccc
Confidence            8888877776 6655421100    00      0                                       0001277


Q ss_pred             CcEEEEEEccC-CC---EEEEecCC-ceEEeee
Q 022111          259 TPVWSVSWSLT-GN---LLAVADAN-NVTLWKE  286 (302)
Q Consensus       259 ~~v~~~~~spd-g~---~la~~~~d-~i~~w~~  286 (302)
                      ..|.++++.++ +.   +|++++.| .|++|+.
T Consensus       345 ~~i~~~~~~~~~~~~~~~~~s~g~Dg~i~iWdl  377 (377)
T 3dwl_C          345 NMIATLRPYAGTPGNITAFTSSGTDGRVVLWTL  377 (377)
T ss_dssp             SCEEEEEEEEEETTEEEEEEEEETTSEEEEECC
T ss_pred             ceeEEEeccCCCCCceEEEEeecCCCcEEEecC
Confidence            78999997654 33   68889888 7999984

>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=100.00  E-value=3.9e-35  Score=270.36  Aligned_cols=234  Identities=13%  Similarity=0.158  Sum_probs=175.4

Q ss_pred             EEEEeeCCCcEEEEeecCCCce--EEEEecCcccCeEEEEeeCC----CCCCEEEEEeCCCeEEEEEcCCCCce------
Q 022111           25 RLATASSDSSIKIIGLSNSASQ--HLATLKGHRGPVWQVAWAHP----KFGSILASCSYDGQVIIWKEGNQNDW------   92 (302)
Q Consensus        25 ~l~s~~~d~~v~lw~~~~~~~~--~~~~~~~h~~~v~~v~~~~~----~~~~~l~s~s~D~~i~iwd~~~~~~~------   92 (302)
                      .|++++.|++|+||++......  ....+.+|.+.|++++|+|.    .++.+||+++.|++|+|||+......      
T Consensus       175 ~laS~s~D~tI~iWd~~~~~~~~~~~~~l~~~~~~V~~v~wsp~~~~~~~~~~LAs~s~DgtvrlWd~~~~~~~~~~~~~  254 (524)
T 2j04_B          175 MFDKEKHSSCIQIFKMNTSTLHCVKVQTIVHSFGEVWDLKWHEGCHAPHLVGCLSFVSQEGTINFLEIIDNATDVHVFKM  254 (524)
T ss_dssp             -------CEEEEEEEEETTTCCEEEEEEEEECCCSEEEEEECSSCCCSSSSCEEEEEETTSCEEEEECCCCSSSSSEEEC
T ss_pred             hhccCCCCceEEEEEccCCCCCceEEEEEEecCCcEEEEEECCCCCCCCCCceEEEEecCCeEEEEEcCCCcccccccee
Confidence            3445668899999999764322  12346678889999999874    13579999999999999999654211      


Q ss_pred             --eEEEEecCCCCCeeEEEecCCCCCcEEEEEecCCcEEEEEecCCCCeeeeeecccCCCCeEEE--EeCCCCCCCceee
Q 022111           93 --TQAHTFNDHKSSVNSIAWAPHELGLSLACGSSDGNISVFTATADGGWDTTRIDQAHPVGVTSV--SWAPAMAPGALVG  168 (302)
Q Consensus        93 --~~~~~~~~h~~~i~~l~~~pd~~~~~l~sg~~d~~v~~~~~~~~~~~~~~~~~~~h~~~v~~~--~~~~~~~~~~~~~  168 (302)
                        .+..++.+|...|.+++|+|+  + .|++|+.|++|++||++.... ....+ .+|...|.++  .|+|++       
T Consensus       255 ~~~p~~~l~~h~~~v~sv~~s~~--~-~lasgs~DgtV~lWD~~~~~~-~~~~~-~~H~~~V~sv~~~~s~~g-------  322 (524)
T 2j04_B          255 CEKPSLTLSLADSLITTFDFLSP--T-TVVCGFKNGFVAEFDLTDPEV-PSFYD-QVHDSYILSVSTAYSDFE-------  322 (524)
T ss_dssp             CCSCSEEECCTTTCEEEEEESSS--S-EEEEEETTSEEEEEETTBCSS-CSEEE-ECSSSCEEEEEEECCTTS-------
T ss_pred             ecCceEEEEcCCCCEEEEEecCC--C-eEEEEeCCCEEEEEECCCCCC-ceEEe-ecccccEEEEEEEcCCCC-------
Confidence              123467889999999999975  3 799999999999999875321 11223 3789999999  455531       


Q ss_pred             cccCCCceeEEEeeCCCcEEEEEEecCccccccccccccCCC--ceeEEEeeCCCCCCccEEEEEecCCeEEEEEeccCC
Q 022111          169 LGLLDPVQKLASCGCDNTVKVWKMYNGIWKMDCFPALQMHSD--WVRSVAWAPNLGLPKSTIASASQDGTVVIWTCAKEG  246 (302)
Q Consensus       169 ~~~~~~~~~l~s~~~D~~v~iwd~~~~~~~~~~~~~~~~h~~--~v~~v~~~p~~~~~~~~l~s~s~D~~i~iwd~~~~~  246 (302)
                            ..+||||+.|++|+|||++++    .+...+.+|..  .|.+++|+|++    ..|++++.|++|++||++...
T Consensus       323 ------~~~laS~S~D~tvklWD~~~~----~~~~~~~~~~~~~~v~~v~fsp~~----~~l~s~~~d~tv~lwd~~~~~  388 (524)
T 2j04_B          323 ------DTVVSTVAVDGYFYIFNPKDI----ATTKTTVSRFRGSNLVPVVYCPQI----YSYIYSDGASSLRAVPSRAAF  388 (524)
T ss_dssp             ------CCEEEEEETTSEEEEECGGGH----HHHCEEEEECSCCSCCCEEEETTT----TEEEEECSSSEEEEEETTCTT
T ss_pred             ------CeEEEEeccCCeEEEEECCCC----CcccccccccccCcccceEeCCCc----CeEEEeCCCCcEEEEECcccc
Confidence                  168999999999999999865    33345556653  58999999985    679999999999999998643


Q ss_pred             cceeeeeeccCCCcEEEEEEccCCCEEEEecCC-ceEEeeec
Q 022111          247 EQWEGRVLKDFKTPVWSVSWSLTGNLLAVADAN-NVTLWKEA  287 (302)
Q Consensus       247 ~~~~~~~~~~~~~~v~~~~~spdg~~la~~~~d-~i~~w~~~  287 (302)
                      .   ...+.+|...|++|+|||+|++|++|+.| .|++|+..
T Consensus       389 ~---~~~l~gH~~~V~sva~Sp~g~~l~Sgs~Dgtv~lwd~~  427 (524)
T 2j04_B          389 A---VHPLVSRETTITAIGVSRLHPMVLAGSADGSLIITNAA  427 (524)
T ss_dssp             C---CEEEEECSSCEEEEECCSSCCBCEEEETTTEEECCBSC
T ss_pred             c---ceeeecCCCceEEEEeCCCCCeEEEEECCCEEEEEech
Confidence            2   12345788999999999999999999999 79999863

>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}

Probab=100.00  E-value=1.2e-33  Score=246.97  Aligned_cols=258  Identities=15%  Similarity=0.185  Sum_probs=197.4

Q ss_pred             cccccceeEEEEccC---CCEEEEeeCCCcEEEEeecCCCceEEEEecCcccCeEEEEeeC----CCCCCEEEEEeCCCe
Q 022111            8 TGHEDTVHDVAMDFY---GKRLATASSDSSIKIIGLSNSASQHLATLKGHRGPVWQVAWAH----PKFGSILASCSYDGQ   80 (302)
Q Consensus         8 ~~h~~~v~~~~~s~~---~~~l~s~~~d~~v~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~----~~~~~~l~s~s~D~~   80 (302)
                      .+|...|++++|+|+   +++|++|+.|+.|++|++.... ..+..+.+|...|.+++|.+    ..++++|++++.|+.
T Consensus        62 ~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~s~~~~~l~~~~~d~~  140 (357)
T 3i2n_A           62 IEKAKPIKCGTFGATSLQQRYLATGDFGGNLHIWNLEAPE-MPVYSVKGHKEIINAIDGIGGLGIGEGAPEIVTGSRDGT  140 (357)
T ss_dssp             EEESSCEEEEECTTCCTTTCCEEEEETTSCEEEECTTSCS-SCSEEECCCSSCEEEEEEESGGGCC-CCCEEEEEETTSC
T ss_pred             ecccCcEEEEEEcCCCCCCceEEEecCCCeEEEEeCCCCC-ccEEEEEecccceEEEeeccccccCCCccEEEEEeCCCe
Confidence            378999999999998   6999999999999999987543 24667889999999997643    124789999999999


Q ss_pred             EEEEEcCCCCceeEEEEecCCCC----CeeEEE----ecCCCCCcEEEEEecCCcEEEEEecCCCCeeeeeecccCCCCe
Q 022111           81 VIIWKEGNQNDWTQAHTFNDHKS----SVNSIA----WAPHELGLSLACGSSDGNISVFTATADGGWDTTRIDQAHPVGV  152 (302)
Q Consensus        81 i~iwd~~~~~~~~~~~~~~~h~~----~i~~l~----~~pd~~~~~l~sg~~d~~v~~~~~~~~~~~~~~~~~~~h~~~v  152 (302)
                      |++||++....  +...+..|.+    .|.+++    |+|+  +.++++++.|+.|++||++....   ... ..|...+
T Consensus       141 i~vwd~~~~~~--~~~~~~~~~~~~~~~v~~~~~~~~~~~~--~~~l~~~~~d~~i~i~d~~~~~~---~~~-~~~~~~v  212 (357)
T 3i2n_A          141 VKVWDPRQKDD--PVANMEPVQGENKRDCWTVAFGNAYNQE--ERVVCAGYDNGDIKLFDLRNMAL---RWE-TNIKNGV  212 (357)
T ss_dssp             EEEECTTSCSS--CSEEECCCTTSCCCCEEEEEEECCCC-C--CCEEEEEETTSEEEEEETTTTEE---EEE-EECSSCE
T ss_pred             EEEEeCCCCCC--cceeccccCCCCCCceEEEEEEeccCCC--CCEEEEEccCCeEEEEECccCce---eee-cCCCCce
Confidence            99999976541  3445544443    899998    6676  66999999999999999875422   122 3678889


Q ss_pred             EEEEeCCCCCCCceeecccCCCceeEEEeeCCCcEEEEEEecCcccccc-ccccccCCCceeEEEeeCCCCCCccEEEEE
Q 022111          153 TSVSWAPAMAPGALVGLGLLDPVQKLASCGCDNTVKVWKMYNGIWKMDC-FPALQMHSDWVRSVAWAPNLGLPKSTIASA  231 (302)
Q Consensus       153 ~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~D~~v~iwd~~~~~~~~~~-~~~~~~h~~~v~~v~~~p~~~~~~~~l~s~  231 (302)
                      .++.|+|...           ++..|++++.|+.|++||++++...... ...+.+|...|.+++|+|++   ..+|+++
T Consensus       213 ~~~~~~~~~~-----------~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~---~~~l~~~  278 (357)
T 3i2n_A          213 CSLEFDRKDI-----------SMNKLVATSLEGKFHVFDMRTQHPTKGFASVSEKAHKSTVWQVRHLPQN---RELFLTA  278 (357)
T ss_dssp             EEEEESCSSS-----------SCCEEEEEESTTEEEEEEEEEEETTTEEEEEEEECCSSCEEEEEEETTE---EEEEEEE
T ss_pred             EEEEcCCCCC-----------CCCEEEEECCCCeEEEEeCcCCCcccceeeeccCCCcCCEEEEEECCCC---CcEEEEE
Confidence            9999998310           1378999999999999999875311110 11234899999999999985   2389999


Q ss_pred             ecCCeEEEEEeccCCcc----------------eeeeeeccCCCcEEEEEEccCCCEEE-EecCC-ceEEeeecC
Q 022111          232 SQDGTVVIWTCAKEGEQ----------------WEGRVLKDFKTPVWSVSWSLTGNLLA-VADAN-NVTLWKEAV  288 (302)
Q Consensus       232 s~D~~i~iwd~~~~~~~----------------~~~~~~~~~~~~v~~~~~spdg~~la-~~~~d-~i~~w~~~~  288 (302)
                      +.|+.|++||++.....                ........|..+|.+++|+|+|++|+ +++.| .|++|+...
T Consensus       279 ~~dg~i~iwd~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~s~~~d~~i~iw~~~~  353 (357)
T 3i2n_A          279 GGAGGLHLWKYEYPIQRSKKDSEGIEMGVAGSVSLLQNVTLSTQPISSLDWSPDKRGLCVCSSFDQTVRVLIVTK  353 (357)
T ss_dssp             ETTSEEEEEEEECCSCC--CCTTSCCCCCCCEEEEEEEEECCSSCEEEEEECSSSTTEEEEEETTSEEEEEEECC
T ss_pred             eCCCcEEEeecCCCcccccccCCCCccccccccceeeccccCCCCeeEEEEcCCCCeEEEEecCCCcEEEEECCC
Confidence            99999999999753211                01123356788999999999999998 68777 799999853

>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a

Probab=100.00  E-value=2.5e-33  Score=243.47  Aligned_cols=251  Identities=20%  Similarity=0.271  Sum_probs=198.5

Q ss_pred             ccccccccceeEEEEccCCCEEEEeeCCCcEEEEeecCCCceEEEEecCcccCeEEEEeeCCCCCCEEEEEeCCCeEEEE
Q 022111            5 KIETGHEDTVHDVAMDFYGKRLATASSDSSIKIIGLSNSASQHLATLKGHRGPVWQVAWAHPKFGSILASCSYDGQVIIW   84 (302)
Q Consensus         5 ~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~s~D~~i~iw   84 (302)
                      +.+.+|...|.+++|+|++++|++++.|+.|++|+....  ........+...+..+.+++.  +++|++++.|+.+++|
T Consensus        80 ~~l~~h~~~V~~~~~s~dg~~l~s~~~d~~i~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~--~~~l~s~s~d~~~~~~  155 (340)
T 4aow_A           80 RALRGHSHFVSDVVISSDGQFALSGSWDGTLRLWDLTTG--TTTRRFVGHTKDVLSVAFSSD--NRQIVSGSRDKTIKLW  155 (340)
T ss_dssp             EEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTT--EEEEEEECCSSCEEEEEECTT--SSCEEEEETTSCEEEE
T ss_pred             EEEeCCCCCEEEEEECCCCCEEEEEcccccceEEeeccc--ceeeeecCCCCceeEEEEeec--CccceeecCCCeEEEE
Confidence            346789999999999999999999999999999998653  344556667778888888653  7899999999999999


Q ss_pred             EcCCCCceeEEEEecCCCCCeeEEEecCCCCCcEEEEEecCCcEEEEEecCCCCeeeeeecccCCCCeEEEEeCCCCCCC
Q 022111           85 KEGNQNDWTQAHTFNDHKSSVNSIAWAPHELGLSLACGSSDGNISVFTATADGGWDTTRIDQAHPVGVTSVSWAPAMAPG  164 (302)
Q Consensus        85 d~~~~~~~~~~~~~~~h~~~i~~l~~~pd~~~~~l~sg~~d~~v~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~  164 (302)
                      |.....  .....+.+|...+.+++|+++.....+++++.|+.|++||+....  ....+ .+|...|++++|+|++   
T Consensus       156 d~~~~~--~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~--~~~~~-~~h~~~v~~~~~s~~~---  227 (340)
T 4aow_A          156 NTLGVC--KYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCK--LKTNH-IGHTGYLNTVTVSPDG---  227 (340)
T ss_dssp             CTTSCE--EEEECSSSCSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTTE--EEEEE-CCCSSCEEEEEECTTS---
T ss_pred             EeCCCc--eEEEEeccccCcccceEEccCCCCcEEEEEcCCCEEEEEECCCCc--eeeEe-cCCCCcEEEEEECCCC---
Confidence            986542  344556789999999999988666789999999999999987542  22333 3789999999999864   


Q ss_pred             ceeecccCCCceeEEEeeCCCcEEEEEEecCccccccccccccCCCceeEEEeeCCCCCCccEEEEEecCCeEEEEEecc
Q 022111          165 ALVGLGLLDPVQKLASCGCDNTVKVWKMYNGIWKMDCFPALQMHSDWVRSVAWAPNLGLPKSTIASASQDGTVVIWTCAK  244 (302)
Q Consensus       165 ~~~~~~~~~~~~~l~s~~~D~~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~l~s~s~D~~i~iwd~~~  244 (302)
                                 .+|++|+.|+.|++||+++..    .+..+. +...|.+++|+|++     .+++++.|+.|++||++.
T Consensus       228 -----------~~l~s~s~Dg~i~iwd~~~~~----~~~~~~-~~~~v~~~~~~~~~-----~~~~~~~d~~i~iwd~~~  286 (340)
T 4aow_A          228 -----------SLCASGGKDGQAMLWDLNEGK----HLYTLD-GGDIINALCFSPNR-----YWLCAATGPSIKIWDLEG  286 (340)
T ss_dssp             -----------SEEEEEETTCEEEEEETTTTE----EEEEEE-CSSCEEEEEECSSS-----SEEEEEETTEEEEEETTT
T ss_pred             -----------CEEEEEeCCCeEEEEEeccCc----eeeeec-CCceEEeeecCCCC-----ceeeccCCCEEEEEECCC
Confidence                       789999999999999998752    333343 45679999999983     577888999999999875


Q ss_pred             CCccee------eeeeccCCCcEEEEEEccCCCEEEEecCC-ceEEeeecC
Q 022111          245 EGEQWE------GRVLKDFKTPVWSVSWSLTGNLLAVADAN-NVTLWKEAV  288 (302)
Q Consensus       245 ~~~~~~------~~~~~~~~~~v~~~~~spdg~~la~~~~d-~i~~w~~~~  288 (302)
                      ......      ......+...|.+++|+|||++|++|+.| .|+||+...
T Consensus       287 ~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~Dg~v~iW~~~t  337 (340)
T 4aow_A          287 KIIVDELKQEVISTSSKAEPPQCTSLAWSADGQTLFAGYTDNLVRVWQVTI  337 (340)
T ss_dssp             TEEEEEECCC-------CCCCCEEEEEECTTSSEEEEEETTSCEEEEEEEC
T ss_pred             CeEEEeccccceeeeccCCCCCEEEEEECCCCCEEEEEeCCCEEEEEeCCC
Confidence            321100      01123566789999999999999999998 699999864

>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X

Probab=100.00  E-value=6.3e-34  Score=252.75  Aligned_cols=262  Identities=15%  Similarity=0.172  Sum_probs=204.6

Q ss_pred             cccccccccceeEEEEccCCCEEEEeeCCCcEEEEeecCCC----ceEEEEecCcccCeEEEEeeCC--CCC---CEEEE
Q 022111            4 QKIETGHEDTVHDVAMDFYGKRLATASSDSSIKIIGLSNSA----SQHLATLKGHRGPVWQVAWAHP--KFG---SILAS   74 (302)
Q Consensus         4 ~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~lw~~~~~~----~~~~~~~~~h~~~v~~v~~~~~--~~~---~~l~s   74 (302)
                      ++++.+|++.|++++|+|  ++|++|+.|++|++|++....    .+.+..+.+|...|.+++|+++  .++   ++|++
T Consensus         9 ~~~~~~h~~~i~~~~~~~--~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~g~~~~~l~s   86 (397)
T 1sq9_A            9 ANAGKAHDADIFSVSACN--SFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQAIERDAFELCLVAT   86 (397)
T ss_dssp             EEESSCSSSCEEEEEECS--SEEEEEETTSEEEEEESBCCTTCCGGGGEEEEECCTTCEEEEEEEEEEETTTEEEEEEEE
T ss_pred             hhhhhhhhcCeEEEEecC--CeEEEEcCCCEEEEEECCCcccccCCCcceEEecCCCcEEEEEEecccccCCccccEEEE
Confidence            345679999999999998  799999999999999997643    2246678899999999999863  126   89999


Q ss_pred             EeCCCeEEEEEcCCCCc--eeEEEEecCC-----CCCeeEEEec----CCCCCcE-EEEEecCCcEEEEEecC------C
Q 022111           75 CSYDGQVIIWKEGNQND--WTQAHTFNDH-----KSSVNSIAWA----PHELGLS-LACGSSDGNISVFTATA------D  136 (302)
Q Consensus        75 ~s~D~~i~iwd~~~~~~--~~~~~~~~~h-----~~~i~~l~~~----pd~~~~~-l~sg~~d~~v~~~~~~~------~  136 (302)
                      ++.|+.|++||+.....  ......+..|     ...|.+++|+    |+  +.. |++++.|+.|++||+..      .
T Consensus        87 ~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~--~~~~l~~~~~dg~i~iwd~~~~~~~~~~  164 (397)
T 1sq9_A           87 TSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRL--LSHRLVATDVKGTTYIWKFHPFADESNS  164 (397)
T ss_dssp             EETTSCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC------CEEEEEEETTSCEEEEEEESSSSHHHH
T ss_pred             EcCCCCEEEEEccCCcccccccceeecccccccCCCcEEEEEEeeccCCC--CceEEEEEeCCCcEEEEeCCcccccccc
Confidence            99999999999876532  0115567777     5999999999    87  568 99999999999999986      3


Q ss_pred             CCee--ee-eec------ccCCCCeEEEEeCCCCCCCceeecccCCCceeEEEeeCCCcEEEEEEecCcccccccccccc
Q 022111          137 GGWD--TT-RID------QAHPVGVTSVSWAPAMAPGALVGLGLLDPVQKLASCGCDNTVKVWKMYNGIWKMDCFPALQM  207 (302)
Q Consensus       137 ~~~~--~~-~~~------~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~D~~v~iwd~~~~~~~~~~~~~~~~  207 (302)
                      ....  .. .+.      ..|...+.+++|+|+              + .|++++.|+.|++||++++    ..+..+..
T Consensus       165 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~--------------~-~l~~~~~dg~i~i~d~~~~----~~~~~~~~  225 (397)
T 1sq9_A          165 LTLNWSPTLELQGTVESPMTPSQFATSVDISER--------------G-LIATGFNNGTVQISELSTL----RPLYNFES  225 (397)
T ss_dssp             TTTCCCCEEEEEEEECCSSSSCCCCCEEEECTT--------------S-EEEEECTTSEEEEEETTTT----EEEEEEEC
T ss_pred             ceeeccCcceeeeeeccccCCCCCceEEEECCC--------------c-eEEEEeCCCcEEEEECCCC----ceeEEEec
Confidence            3221  00 221      247788999999884              5 8999999999999999875    34455666


Q ss_pred             ---C---CCceeEEEeeCCCCCCccEEEEEecC---CeEEEEEeccCCcceeeeeecc-------------CCCcEEEEE
Q 022111          208 ---H---SDWVRSVAWAPNLGLPKSTIASASQD---GTVVIWTCAKEGEQWEGRVLKD-------------FKTPVWSVS  265 (302)
Q Consensus       208 ---h---~~~v~~v~~~p~~~~~~~~l~s~s~D---~~i~iwd~~~~~~~~~~~~~~~-------------~~~~v~~~~  265 (302)
                         |   ...|.+++|+|++    .+|++++.|   +.|++||++....   ......             +...|.+++
T Consensus       226 ~~~h~~~~~~i~~i~~~~~~----~~l~~~~~d~~~g~i~i~d~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~v~~~~  298 (397)
T 1sq9_A          226 QHSMINNSNSIRSVKFSPQG----SLLAIAHDSNSFGCITLYETEFGER---IGSLSVPTHSSQASLGEFAHSSWVMSLS  298 (397)
T ss_dssp             CC---CCCCCEEEEEECSST----TEEEEEEEETTEEEEEEEETTTCCE---EEEECBC--------CCBSBSSCEEEEE
T ss_pred             cccccccCCccceEEECCCC----CEEEEEecCCCCceEEEEECCCCcc---cceeccCcccccccccccccCCcEEEEE
Confidence               8   9999999999985    789999999   9999999976432   122344             778999999


Q ss_pred             EccCCCEEEEecCC-ceEEeeecCCceEEEe
Q 022111          266 WSLTGNLLAVADAN-NVTLWKEAVDGEWQQV  295 (302)
Q Consensus       266 ~spdg~~la~~~~d-~i~~w~~~~~~~~~~~  295 (302)
                      |+|++++|++++.| .|++|+..........
T Consensus       299 ~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~  329 (397)
T 1sq9_A          299 FNDSGETLCSAGWDGKLRFWDVKTKERITTL  329 (397)
T ss_dssp             ECSSSSEEEEEETTSEEEEEETTTTEEEEEE
T ss_pred             ECCCCCEEEEEeCCCeEEEEEcCCCceeEEE
Confidence            99999999999988 6999998655444333

>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}

Probab=100.00  E-value=6.4e-33  Score=246.36  Aligned_cols=262  Identities=19%  Similarity=0.295  Sum_probs=202.0

Q ss_pred             cccccccccceeEEEEcc-CCCEEEEeeCCCcEEEEeecCCCceEEEEe-----------cCcccCeEEEEeeCCCCCCE
Q 022111            4 QKIETGHEDTVHDVAMDF-YGKRLATASSDSSIKIIGLSNSASQHLATL-----------KGHRGPVWQVAWAHPKFGSI   71 (302)
Q Consensus         4 ~~~~~~h~~~v~~~~~s~-~~~~l~s~~~d~~v~lw~~~~~~~~~~~~~-----------~~h~~~v~~v~~~~~~~~~~   71 (302)
                      .+++.+|.+.|++++|+| ++++|++|+.|++|++|++...........           .+|...|.+++|++. ++.+
T Consensus        36 ~~~~~~h~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~~  114 (408)
T 4a11_B           36 RDVERIHGGGINTLDIEPVEGRYMLSGGSDGVIVLYDLENSSRQSYYTCKAVCSIGRDHPDVHRYSVETVQWYPH-DTGM  114 (408)
T ss_dssp             EEECCCCSSCEEEEEECTTTCCEEEEEETTSCEEEEECCCCSSSSCEEECEEEEECTTCTTCCSSCEEEEEECTT-CTTC
T ss_pred             eeeeeccCCcEEEEEEecCCCCEEEEEcCCCeEEEEECCCCcccceEeccccccccccccccCCCcEEEEEEccC-CCcE
Confidence            345678999999999999 999999999999999999865432211111           359999999999863 4789


Q ss_pred             EEEEeCCCeEEEEEcCCCCceeEEEEecCCCCCeeEEEecCCC-CCcEEEEEecCCcEEEEEecCCCCeeeeeecccCCC
Q 022111           72 LASCSYDGQVIIWKEGNQNDWTQAHTFNDHKSSVNSIAWAPHE-LGLSLACGSSDGNISVFTATADGGWDTTRIDQAHPV  150 (302)
Q Consensus        72 l~s~s~D~~i~iwd~~~~~~~~~~~~~~~h~~~i~~l~~~pd~-~~~~l~sg~~d~~v~~~~~~~~~~~~~~~~~~~h~~  150 (302)
                      |++++.|+.|++||+.+..   ....+. +...+.++.|+|.. .+.++++++.|+.|++||+......  ..+ ..|..
T Consensus       115 l~s~~~d~~i~iwd~~~~~---~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~--~~~-~~~~~  187 (408)
T 4a11_B          115 FTSSSFDKTLKVWDTNTLQ---TADVFN-FEETVYSHHMSPVSTKHCLVAVGTRGPKVQLCDLKSGSCS--HIL-QGHRQ  187 (408)
T ss_dssp             EEEEETTSEEEEEETTTTE---EEEEEE-CSSCEEEEEECSSCSSCCEEEEEESSSSEEEEESSSSCCC--EEE-CCCCS
T ss_pred             EEEEeCCCeEEEeeCCCCc---cceecc-CCCceeeeEeecCCCCCcEEEEEcCCCeEEEEeCCCccee--eee-cCCCC
Confidence            9999999999999997753   344444 77889999999863 2458999999999999998754322  233 37888


Q ss_pred             CeEEEEeCCCCCCCceeecccCCCceeEEEeeCCCcEEEEEEecCcccc------------ccccccccCCCceeEEEee
Q 022111          151 GVTSVSWAPAMAPGALVGLGLLDPVQKLASCGCDNTVKVWKMYNGIWKM------------DCFPALQMHSDWVRSVAWA  218 (302)
Q Consensus       151 ~v~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~D~~v~iwd~~~~~~~~------------~~~~~~~~h~~~v~~v~~~  218 (302)
                      .|.+++|+|++             ...|++++.|+.|++||++......            .....+.+|...|.+++|+
T Consensus       188 ~v~~~~~~~~~-------------~~ll~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~  254 (408)
T 4a11_B          188 EILAVSWSPRY-------------DYILATASADSRVKLWDVRRASGCLITLDQHNGKKSQAVESANTAHNGKVNGLCFT  254 (408)
T ss_dssp             CEEEEEECSSC-------------TTEEEEEETTSCEEEEETTCSSCCSEECCTTTTCSCCCTTTSSCSCSSCEEEEEEC
T ss_pred             cEEEEEECCCC-------------CcEEEEEcCCCcEEEEECCCCCcccccccccccccceeeccccccccCceeEEEEc
Confidence            99999999864             1368999999999999997653111            1122336799999999999


Q ss_pred             CCCCCCccEEEEEecCCeEEEEEeccCCcce--------------------------------------------eeeee
Q 022111          219 PNLGLPKSTIASASQDGTVVIWTCAKEGEQW--------------------------------------------EGRVL  254 (302)
Q Consensus       219 p~~~~~~~~l~s~s~D~~i~iwd~~~~~~~~--------------------------------------------~~~~~  254 (302)
                      |++    .+|++++.|+.|++||++......                                            ....+
T Consensus       255 ~~~----~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~  330 (408)
T 4a11_B          255 SDG----LHLLTVGTDNRMRLWNSSNGENTLVNYGKVCNNSKKGLKFTVSCGCSSEFVFVPYGSTIAVYTVYSGEQITML  330 (408)
T ss_dssp             TTS----SEEEEEETTSCEEEEETTTCCBCCCCCCCCCCCCSSCCCCEECCSSSSCEEEEEETTEEEEEETTTCCEEEEE
T ss_pred             CCC----CEEEEecCCCeEEEEECCCCccceeccccccccccccceeEEecCCCceEEEEecCCEEEEEECcCCcceeee
Confidence            985    789999999999999987532110                                            01112


Q ss_pred             ccCCCcEEEEEEccCCCEEEEecCC-ceEEeeecCCc
Q 022111          255 KDFKTPVWSVSWSLTGNLLAVADAN-NVTLWKEAVDG  290 (302)
Q Consensus       255 ~~~~~~v~~~~~spdg~~la~~~~d-~i~~w~~~~~~  290 (302)
                      ..|...|.+++|+|+|++|++++.| .|++|+.....
T Consensus       331 ~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~  367 (408)
T 4a11_B          331 KGHYKTVDCCVFQSNFQELYSGSRDCNILAWVPSLYE  367 (408)
T ss_dssp             CCCSSCEEEEEEETTTTEEEEEETTSCEEEEEECC--
T ss_pred             ccCCCeEEEEEEcCCCCEEEEECCCCeEEEEeCCCCC
Confidence            4567889999999999999999988 79999986543

>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}

Probab=100.00  E-value=1.4e-33  Score=254.28  Aligned_cols=259  Identities=12%  Similarity=0.206  Sum_probs=192.6

Q ss_pred             ccccceeEEEEccCCCEEEEeeCCCcEEEEeecCCC---------ceEEEEecCcc------------cCeEEEEeeCCC
Q 022111            9 GHEDTVHDVAMDFYGKRLATASSDSSIKIIGLSNSA---------SQHLATLKGHR------------GPVWQVAWAHPK   67 (302)
Q Consensus         9 ~h~~~v~~~~~s~~~~~l~s~~~d~~v~lw~~~~~~---------~~~~~~~~~h~------------~~v~~v~~~~~~   67 (302)
                      .|.+.|++++|+|++++||+|+.|+.|+||++....         .+....+.+|.            ..|.+++|+++.
T Consensus        26 ~~~~~V~~v~~s~~g~~la~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~l~~~~~~  105 (447)
T 3dw8_B           26 AEADIISTVEFNHSGELLATGDKGGRVVIFQQEQENKIQSHSRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLPQK  105 (447)
T ss_dssp             CGGGSEEEEEECSSSSEEEEEETTSEEEEEEECC-----CCCCCCEEEEEEEECCCCEEEGGGTEEECCCCCEEEECCCC
T ss_pred             cccCcEEEEEECCCCCEEEEEcCCCeEEEEEecCCCCCCcccccceeEecccccccccccccccccccCceEEEEEcCCC
Confidence            467899999999999999999999999999986532         12466788998            889999998752


Q ss_pred             CCCEEEEEeCCCeEEEEEcCCCCce------------------------------------eEEEE-ecCCCCCeeEEEe
Q 022111           68 FGSILASCSYDGQVIIWKEGNQNDW------------------------------------TQAHT-FNDHKSSVNSIAW  110 (302)
Q Consensus        68 ~~~~l~s~s~D~~i~iwd~~~~~~~------------------------------------~~~~~-~~~h~~~i~~l~~  110 (302)
                      ...+|++++.|++|++||+......                                    .+... ..+|...|.+++|
T Consensus       106 ~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~  185 (447)
T 3dw8_B          106 NAAQFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFANAHTYHINSISI  185 (447)
T ss_dssp             SSSEEEEEECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEECSCCSSCCCEEEE
T ss_pred             CcceEEEeCCCCeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceEEeccCCCcceEEEEE
Confidence            2278999999999999998642110                                    01112 3679999999999


Q ss_pred             cCCCCCcEEEEEecCCcEEEEEecCCCC-eeeee----ecccCCCCeEEEEeCCCCCCCceeecccCCCceeEEEeeCCC
Q 022111          111 APHELGLSLACGSSDGNISVFTATADGG-WDTTR----IDQAHPVGVTSVSWAPAMAPGALVGLGLLDPVQKLASCGCDN  185 (302)
Q Consensus       111 ~pd~~~~~l~sg~~d~~v~~~~~~~~~~-~~~~~----~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~D~  185 (302)
                      +|+  +.+|++| .|+.|++||+..... .....    ....|...|.+++|+|++             ..+|++|+.|+
T Consensus       186 ~~~--~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~-------------~~~l~s~~~dg  249 (447)
T 3dw8_B          186 NSD--YETYLSA-DDLRINLWHLEITDRSFNIVDIKPANMEELTEVITAAEFHPNS-------------CNTFVYSSSKG  249 (447)
T ss_dssp             CTT--SSEEEEE-CSSEEEEEETTEEEEEEEEEECCCSSGGGCCCCEEEEEECSSC-------------TTEEEEEETTS
T ss_pred             cCC--CCEEEEe-CCCeEEEEECCCCCceeeeeecccccccccCcceEEEEECCCC-------------CcEEEEEeCCC
Confidence            998  6789998 799999999873221 11110    123788899999999863             26899999999


Q ss_pred             cEEEEEEecCccccccccccccCCC------------ceeEEEeeCCCCCCccEEEEEecCCeEEEEEeccCCcceeeee
Q 022111          186 TVKVWKMYNGIWKMDCFPALQMHSD------------WVRSVAWAPNLGLPKSTIASASQDGTVVIWTCAKEGEQWEGRV  253 (302)
Q Consensus       186 ~v~iwd~~~~~~~~~~~~~~~~h~~------------~v~~v~~~p~~~~~~~~l~s~s~D~~i~iwd~~~~~~~~~~~~  253 (302)
                      .|++||++++.........+.+|..            .|.+++|+|++    .+|++++. +.|++||++......  ..
T Consensus       250 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g----~~l~~~~~-~~v~iwd~~~~~~~~--~~  322 (447)
T 3dw8_B          250 TIRLCDMRASALCDRHSKLFEEPEDPSNRSFFSEIISSISDVKFSHSG----RYMMTRDY-LSVKVWDLNMENRPV--ET  322 (447)
T ss_dssp             CEEEEETTTCSSSCTTCEEECCC-----CCHHHHHTTCEEEEEECTTS----SEEEEEES-SEEEEEETTCCSSCS--CC
T ss_pred             eEEEEECcCCccccceeeEeccCCCccccccccccCceEEEEEECCCC----CEEEEeeC-CeEEEEeCCCCcccc--ce
Confidence            9999999876421112345666765            89999999985    78999999 999999997522211  11


Q ss_pred             eccCCC---------------cEEEEEEccCCCEEEEecCC-ceEEeeecCCc
Q 022111          254 LKDFKT---------------PVWSVSWSLTGNLLAVADAN-NVTLWKEAVDG  290 (302)
Q Consensus       254 ~~~~~~---------------~v~~~~~spdg~~la~~~~d-~i~~w~~~~~~  290 (302)
                      ...+..               .+.+++|+|+|++|++++.| .|++|+.....
T Consensus       323 ~~~~~~~~~~l~~~~~~~~i~~~~~~~~s~~~~~l~s~s~dg~v~iwd~~~~~  375 (447)
T 3dw8_B          323 YQVHEYLRSKLCSLYENDCIFDKFECCWNGSDSVVMTGSYNNFFRMFDRNTKR  375 (447)
T ss_dssp             EESCGGGTTTHHHHHHTSGGGCCCCEEECTTSSEEEEECSTTEEEEEETTTCC
T ss_pred             eeccccccccccccccccccccceEEEECCCCCEEEEeccCCEEEEEEcCCCc
Confidence            222221               13359999999999999988 79999986543

>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}

Probab=100.00  E-value=1.8e-33  Score=251.24  Aligned_cols=246  Identities=24%  Similarity=0.404  Sum_probs=199.5

Q ss_pred             ccccceeEEEEccCCCEEEEeeCCCcEEEEeecCCCceEEEEecCcccCeEEEEeeCCCCCCEEEEEeCCCeEEEEEcCC
Q 022111            9 GHEDTVHDVAMDFYGKRLATASSDSSIKIIGLSNSASQHLATLKGHRGPVWQVAWAHPKFGSILASCSYDGQVIIWKEGN   88 (302)
Q Consensus         9 ~h~~~v~~~~~s~~~~~l~s~~~d~~v~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~s~D~~i~iwd~~~   88 (302)
                      .|...|++++|+|++++|++|+.|+.|++|++...  +.+..+.+|...|.+++|.    +++|++++.|+.|++||++.
T Consensus       132 ~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~--~~~~~~~~~~~~v~~~~~~----~~~l~~~~~dg~i~i~d~~~  205 (401)
T 4aez_A          132 DESTYVASVKWSHDGSFLSVGLGNGLVDIYDVESQ--TKLRTMAGHQARVGCLSWN----RHVLSSGSRSGAIHHHDVRI  205 (401)
T ss_dssp             CTTCCEEEEEECTTSSEEEEEETTSCEEEEETTTC--CEEEEECCCSSCEEEEEEE----TTEEEEEETTSEEEEEETTS
T ss_pred             CCCCCEEEEEECCCCCEEEEECCCCeEEEEECcCC--eEEEEecCCCCceEEEEEC----CCEEEEEcCCCCEEEEeccc
Confidence            48899999999999999999999999999998653  4667888999999999994    57999999999999999974


Q ss_pred             CCceeEEEEecCCCCCeeEEEecCCCCCcEEEEEecCCcEEEEEecCCCCeeeeeecccCCCCeEEEEeCCCCCCCceee
Q 022111           89 QNDWTQAHTFNDHKSSVNSIAWAPHELGLSLACGSSDGNISVFTATADGGWDTTRIDQAHPVGVTSVSWAPAMAPGALVG  168 (302)
Q Consensus        89 ~~~~~~~~~~~~h~~~i~~l~~~pd~~~~~l~sg~~d~~v~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~  168 (302)
                      ..  .....+.+|...|.+++|+|+  +.+|++|+.|+.|++||+....  ....+ ..|...|.+++|+|++       
T Consensus       206 ~~--~~~~~~~~~~~~v~~~~~~~~--~~~l~s~~~d~~v~iwd~~~~~--~~~~~-~~~~~~v~~~~~~p~~-------  271 (401)
T 4aez_A          206 AN--HQIGTLQGHSSEVCGLAWRSD--GLQLASGGNDNVVQIWDARSSI--PKFTK-TNHNAAVKAVAWCPWQ-------  271 (401)
T ss_dssp             SS--CEEEEEECCSSCEEEEEECTT--SSEEEEEETTSCEEEEETTCSS--EEEEE-CCCSSCCCEEEECTTS-------
T ss_pred             Cc--ceeeEEcCCCCCeeEEEEcCC--CCEEEEEeCCCeEEEccCCCCC--ccEEe-cCCcceEEEEEECCCC-------
Confidence            43  356678889999999999997  6799999999999999987532  22233 3688899999999964       


Q ss_pred             cccCCCceeEEEee--CCCcEEEEEEecCccccccccccccCCCceeEEEeeCCCCCCccEEEE--EecCCeEEEEEecc
Q 022111          169 LGLLDPVQKLASCG--CDNTVKVWKMYNGIWKMDCFPALQMHSDWVRSVAWAPNLGLPKSTIAS--ASQDGTVVIWTCAK  244 (302)
Q Consensus       169 ~~~~~~~~~l~s~~--~D~~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~l~s--~s~D~~i~iwd~~~  244 (302)
                            ..++++++  .|+.|++||+.++.    .+..+ .|...|.+++|+|++    ..|++  |+.|+.|++||+..
T Consensus       272 ------~~ll~~~~gs~d~~i~i~d~~~~~----~~~~~-~~~~~v~~~~~s~~~----~~l~~~~g~~dg~i~v~~~~~  336 (401)
T 4aez_A          272 ------SNLLATGGGTMDKQIHFWNAATGA----RVNTV-DAGSQVTSLIWSPHS----KEIMSTHGFPDNNLSIWSYSS  336 (401)
T ss_dssp             ------TTEEEEECCTTTCEEEEEETTTCC----EEEEE-ECSSCEEEEEECSSS----SEEEEEECTTTCEEEEEEEET
T ss_pred             ------CCEEEEecCCCCCEEEEEECCCCC----EEEEE-eCCCcEEEEEECCCC----CeEEEEeecCCCcEEEEecCC
Confidence                  35677765  79999999998763    23333 366789999999985    67777  45899999999976


Q ss_pred             CCcceeeeeeccCCCcEEEEEEccCCCEEEEecCC-ceEEeeecCCc
Q 022111          245 EGEQWEGRVLKDFKTPVWSVSWSLTGNLLAVADAN-NVTLWKEAVDG  290 (302)
Q Consensus       245 ~~~~~~~~~~~~~~~~v~~~~~spdg~~la~~~~d-~i~~w~~~~~~  290 (302)
                      .... ....+..|...|.+++|+|+|++|++++.| .|++|+.....
T Consensus       337 ~~~~-~~~~~~~h~~~v~~~~~s~dg~~l~s~~~dg~i~iw~~~~~~  382 (401)
T 4aez_A          337 SGLT-KQVDIPAHDTRVLYSALSPDGRILSTAASDENLKFWRVYDGD  382 (401)
T ss_dssp             TEEE-EEEEEECCSSCCCEEEECTTSSEEEEECTTSEEEEEECCC--
T ss_pred             ccce-eEEEecCCCCCEEEEEECCCCCEEEEEeCCCcEEEEECCCCc
Confidence            4221 112235778899999999999999999988 79999986543

>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A

Probab=100.00  E-value=6e-33  Score=249.48  Aligned_cols=246  Identities=24%  Similarity=0.429  Sum_probs=198.0

Q ss_pred             cccccceeEEEEccCCCEEEEeeCCCcEEEEeecCCCceEEEEecCcccCeEEEEeeCCCCCCEEEEEeCCCeEEEEEcC
Q 022111            8 TGHEDTVHDVAMDFYGKRLATASSDSSIKIIGLSNSASQHLATLKGHRGPVWQVAWAHPKFGSILASCSYDGQVIIWKEG   87 (302)
Q Consensus         8 ~~h~~~v~~~~~s~~~~~l~s~~~d~~v~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~s~D~~i~iwd~~   87 (302)
                      .+|...|++++|+|+|++||+|+.|++|+|||+..  .+.+..+.+|...+.++++.    +.+|++|+.|+.+++||..
T Consensus       144 ~~~~~~V~sv~fspdg~~lasgs~Dg~v~iWd~~~--~~~~~~~~~h~~~v~~~s~~----~~~l~sgs~d~~i~~~d~~  217 (420)
T 4gga_A          144 EQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQ--QKRLRNMTSHSARVGSLSWN----SYILSSGSRSGHIHHHDVR  217 (420)
T ss_dssp             CSTTCCEEEEEECTTSSEEEEEETTSCEEEEETTT--TEEEEEECCCSSCEEEEEEE----TTEEEEEETTSEEEEEETT
T ss_pred             cCCCCcEEEEEECCCCCEEEEEECCCeEEEEEcCC--CcEEEEEeCCCCceEEEeeC----CCEEEEEeCCCceeEeeec
Confidence            46888999999999999999999999999999865  46778899999999999885    5799999999999999986


Q ss_pred             CCCceeEEEEecCCCCCeeEEEecCCCCCcEEEEEecCCcEEEEEecCCCCe-eeeeecccCCCCeEEEEeCCCCCCCce
Q 022111           88 NQNDWTQAHTFNDHKSSVNSIAWAPHELGLSLACGSSDGNISVFTATADGGW-DTTRIDQAHPVGVTSVSWAPAMAPGAL  166 (302)
Q Consensus        88 ~~~~~~~~~~~~~h~~~i~~l~~~pd~~~~~l~sg~~d~~v~~~~~~~~~~~-~~~~~~~~h~~~v~~~~~~~~~~~~~~  166 (302)
                      ...  ..+.++.+|...+..+.|+|+  +.++++++.|+.+++|+....... ........|...|.+++|+|..     
T Consensus       218 ~~~--~~~~~~~~h~~~~~~~~~~~~--g~~l~s~~~D~~v~i~~~~~~~~~~~~~~~~~~~~~~V~~~~~~p~~-----  288 (420)
T 4gga_A          218 VAE--HHVATLSGHSQEVCGLRWAPD--GRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQ-----  288 (420)
T ss_dssp             SSS--CEEEEEECCSSCEEEEEECTT--SSEEEEEETTSCEEEEESSCCSSCSCCSEEECCCSSCEEEEEECTTC-----
T ss_pred             ccc--eeeEEecccccceeeeeecCC--CCeeeeeeccccceEEeeccccccceeeeeecccCCceeeeeeCCCc-----
Confidence            643  356678899999999999998  679999999999999998754321 1112223688889999999864     


Q ss_pred             eecccCCCceeEEE--eeCCCcEEEEEEecCccccccccccccCCCceeEEEeeCCCCCCccEEEEEe--cCCeEEEEEe
Q 022111          167 VGLGLLDPVQKLAS--CGCDNTVKVWKMYNGIWKMDCFPALQMHSDWVRSVAWAPNLGLPKSTIASAS--QDGTVVIWTC  242 (302)
Q Consensus       167 ~~~~~~~~~~~l~s--~~~D~~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~l~s~s--~D~~i~iwd~  242 (302)
                              ...+++  |+.|++|+|||+.++.    +...+. +...|.++.|+|++    ..+++++  .|+.|+|||+
T Consensus       289 --------~~~la~~~gs~D~~I~iwd~~t~~----~~~~~~-~~~~v~~~~~~~~~----~~lv~~sg~~d~~I~iwd~  351 (420)
T 4gga_A          289 --------SNVLATGGGTSDRHIRIWNVCSGA----CLSAVD-AHSQVCSILWSPHY----KELISGHGFAQNQLVIWKY  351 (420)
T ss_dssp             --------TTEEEEEECTTTCEEEEEETTTTE----EEEEEE-CSSCEEEEEEETTT----TEEEEEECTTTCCEEEEET
T ss_pred             --------ccEEEEEeecCCCEEEEEeCCccc----cceeec-cccceeeeeecCCC----CeEEEEEecCCCEEEEEEC
Confidence                    245554  5679999999998763    333333 34568999999985    4555544  7999999999


Q ss_pred             ccCCcceeeeeeccCCCcEEEEEEccCCCEEEEecCC-ceEEeeecC
Q 022111          243 AKEGEQWEGRVLKDFKTPVWSVSWSLTGNLLAVADAN-NVTLWKEAV  288 (302)
Q Consensus       243 ~~~~~~~~~~~~~~~~~~v~~~~~spdg~~la~~~~d-~i~~w~~~~  288 (302)
                      .+...   ...+.+|...|++++|||||++|++|+.| .|+||+..+
T Consensus       352 ~~~~~---v~~l~gH~~~V~~l~~spdg~~l~S~s~D~tvriWdv~~  395 (420)
T 4gga_A          352 PTMAK---VAELKGHTSRVLSLTMSPDGATVASAAADETLRLWRCFE  395 (420)
T ss_dssp             TTCCE---EEEECCCSSCEEEEEECTTSSCEEEEETTTEEEEECCSC
T ss_pred             CCCcE---EEEEcCCCCCEEEEEEcCCCCEEEEEecCCeEEEEECCC
Confidence            76432   23457889999999999999999999999 799999743

>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A

Probab=100.00  E-value=1.1e-32  Score=238.66  Aligned_cols=248  Identities=17%  Similarity=0.252  Sum_probs=201.5

Q ss_pred             cccccceeEEEEccCCCEEEEeeCCCcEEEEeecCCC-ceEEEEe--cCcccCeEEEEeeCCCCCCEEEEEeCCCeEEEE
Q 022111            8 TGHEDTVHDVAMDFYGKRLATASSDSSIKIIGLSNSA-SQHLATL--KGHRGPVWQVAWAHPKFGSILASCSYDGQVIIW   84 (302)
Q Consensus         8 ~~h~~~v~~~~~s~~~~~l~s~~~d~~v~lw~~~~~~-~~~~~~~--~~h~~~v~~v~~~~~~~~~~l~s~s~D~~i~iw   84 (302)
                      .+|...|++++|+|++++|++++ |+.|++|++.... ...+..+  .+|...|.+++|+++  +++|++++.|+.|++|
T Consensus        48 ~~h~~~v~~~~~~~~~~~l~~~~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~~~l~~~~~d~~i~~~  124 (337)
T 1gxr_A           48 LNHGEVVCAVTISNPTRHVYTGG-KGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPD--GCTLIVGGEASTLSIW  124 (337)
T ss_dssp             ECCSSCCCEEEECSSSSEEEEEC-BSEEEEEETTSTTCCSCSEEEECSCTTSBEEEEEECTT--SSEEEEEESSSEEEEE
T ss_pred             ccCCCceEEEEEecCCcEEEEcC-CCeEEEEECCCCCceeeeecccccCCCCcEEEEEEcCC--CCEEEEEcCCCcEEEE
Confidence            47999999999999999999998 9999999986532 1223333  379999999999864  7899999999999999


Q ss_pred             EcCCCCceeEEEEecCCCCCeeEEEecCCCCCcEEEEEecCCcEEEEEecCCCCeeeeeecccCCCCeEEEEeCCCCCCC
Q 022111           85 KEGNQNDWTQAHTFNDHKSSVNSIAWAPHELGLSLACGSSDGNISVFTATADGGWDTTRIDQAHPVGVTSVSWAPAMAPG  164 (302)
Q Consensus        85 d~~~~~~~~~~~~~~~h~~~i~~l~~~pd~~~~~l~sg~~d~~v~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~  164 (302)
                      |+++.. ......+..|...|.+++|+|+  +.++++++.|+.|++||+....  ....+ ..|...+.+++|+|++   
T Consensus       125 d~~~~~-~~~~~~~~~~~~~i~~~~~~~~--~~~l~~~~~dg~v~~~d~~~~~--~~~~~-~~~~~~i~~~~~~~~~---  195 (337)
T 1gxr_A          125 DLAAPT-PRIKAELTSSAPACYALAISPD--SKVCFSCCSDGNIAVWDLHNQT--LVRQF-QGHTDGASCIDISNDG---  195 (337)
T ss_dssp             ECCCC---EEEEEEECSSSCEEEEEECTT--SSEEEEEETTSCEEEEETTTTE--EEEEE-CCCSSCEEEEEECTTS---
T ss_pred             ECCCCC-cceeeecccCCCceEEEEECCC--CCEEEEEeCCCcEEEEeCCCCc--eeeee-ecccCceEEEEECCCC---
Confidence            997653 2345667789999999999997  6689999999999999987542  22333 3688899999999863   


Q ss_pred             ceeecccCCCceeEEEeeCCCcEEEEEEecCccccccccccccCCCceeEEEeeCCCCCCccEEEEEecCCeEEEEEecc
Q 022111          165 ALVGLGLLDPVQKLASCGCDNTVKVWKMYNGIWKMDCFPALQMHSDWVRSVAWAPNLGLPKSTIASASQDGTVVIWTCAK  244 (302)
Q Consensus       165 ~~~~~~~~~~~~~l~s~~~D~~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~l~s~s~D~~i~iwd~~~  244 (302)
                                 ..|++++.|+.|++||++++.    .... ..|...|.+++|+|++    ..|++++.|+.|++||++.
T Consensus       196 -----------~~l~~~~~dg~i~~~d~~~~~----~~~~-~~~~~~v~~~~~s~~~----~~l~~~~~~~~i~~~~~~~  255 (337)
T 1gxr_A          196 -----------TKLWTGGLDNTVRSWDLREGR----QLQQ-HDFTSQIFSLGYCPTG----EWLAVGMESSNVEVLHVNK  255 (337)
T ss_dssp             -----------SEEEEEETTSEEEEEETTTTE----EEEE-EECSSCEEEEEECTTS----SEEEEEETTSCEEEEETTS
T ss_pred             -----------CEEEEEecCCcEEEEECCCCc----eEee-ecCCCceEEEEECCCC----CEEEEEcCCCcEEEEECCC
Confidence                       789999999999999998763    2222 2477889999999985    7899999999999999976


Q ss_pred             CCcceeeeeeccCCCcEEEEEEccCCCEEEEecCC-ceEEeeecCCce
Q 022111          245 EGEQWEGRVLKDFKTPVWSVSWSLTGNLLAVADAN-NVTLWKEAVDGE  291 (302)
Q Consensus       245 ~~~~~~~~~~~~~~~~v~~~~~spdg~~la~~~~d-~i~~w~~~~~~~  291 (302)
                      ...    .....+..+|.+++|+|+|++|++++.| .|++|+......
T Consensus       256 ~~~----~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~  299 (337)
T 1gxr_A          256 PDK----YQLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGAS  299 (337)
T ss_dssp             SCE----EEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCE
T ss_pred             CCe----EEEcCCccceeEEEECCCCCEEEEecCCCcEEEEECCCCeE
Confidence            431    2345678899999999999999999888 699999865443

>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A

Probab=100.00  E-value=1.2e-33  Score=252.83  Aligned_cols=250  Identities=19%  Similarity=0.265  Sum_probs=193.9

Q ss_pred             cccccccceeEEEEccCCCEEEEeeCCCcEEEEeecCCCceEEEEecCcccCeEEEEeeCCCCCCEEEEEeCCCeEEEEE
Q 022111            6 IETGHEDTVHDVAMDFYGKRLATASSDSSIKIIGLSNSASQHLATLKGHRGPVWQVAWAHPKFGSILASCSYDGQVIIWK   85 (302)
Q Consensus         6 ~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~s~D~~i~iwd   85 (302)
                      .+.+|...|++++|+|++++|++|+.|++|++||+...  +.+..+.+|...|.+++|+++  +++|++++.|++|++||
T Consensus       134 ~~~~h~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~--~~~~~~~~h~~~v~~~~~~~~--~~~l~s~~~d~~v~iwd  209 (420)
T 3vl1_A          134 IDQAHVSEITKLKFFPSGEALISSSQDMQLKIWSVKDG--SNPRTLIGHRATVTDIAIIDR--GRNVLSASLDGTIRLWE  209 (420)
T ss_dssp             ETTSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTC--CCCEEEECCSSCEEEEEEETT--TTEEEEEETTSCEEEEE
T ss_pred             ecccccCccEEEEECCCCCEEEEEeCCCeEEEEeCCCC--cCceEEcCCCCcEEEEEEcCC--CCEEEEEcCCCcEEEeE
Confidence            35689999999999999999999999999999999653  356678899999999999874  78999999999999999


Q ss_pred             cCCCCceeEEEEecC---CCCCeeE---------------------EEecCCCCCcEEEEEecCCcEEEEEecCCCCeee
Q 022111           86 EGNQNDWTQAHTFND---HKSSVNS---------------------IAWAPHELGLSLACGSSDGNISVFTATADGGWDT  141 (302)
Q Consensus        86 ~~~~~~~~~~~~~~~---h~~~i~~---------------------l~~~pd~~~~~l~sg~~d~~v~~~~~~~~~~~~~  141 (302)
                      +++..   ....+..   |...|.+                     ++|+|+  +.+|++|+.|+.|++||++...  ..
T Consensus       210 ~~~~~---~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~s~~--~~~l~~~~~dg~i~i~d~~~~~--~~  282 (420)
T 3vl1_A          210 CGTGT---TIHTFNRKENPHDGVNSIALFVGTDRQLHEISTSKKNNLEFGTY--GKYVIAGHVSGVITVHNVFSKE--QT  282 (420)
T ss_dssp             TTTTE---EEEEECBTTBTTCCEEEEEEEECCCSSCGGGCCCCCCTTCSSCT--TEEEEEEETTSCEEEEETTTCC--EE
T ss_pred             CCCCc---eeEEeecCCCCCCCccEEEEecCCcceeeecccCcccceEEcCC--CCEEEEEcCCCeEEEEECCCCc--ee
Confidence            97653   4445543   3444444                     455666  6799999999999999987543  22


Q ss_pred             eeecccCCCCeEEEEeCCCCCCCceeecccCCCceeEEEeeCCCcEEEEEEecCcccccccccccc-CCCceeEEEeeCC
Q 022111          142 TRIDQAHPVGVTSVSWAPAMAPGALVGLGLLDPVQKLASCGCDNTVKVWKMYNGIWKMDCFPALQM-HSDWVRSVAWAPN  220 (302)
Q Consensus       142 ~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~D~~v~iwd~~~~~~~~~~~~~~~~-h~~~v~~v~~~p~  220 (302)
                      ..+...|...+.+++|+|++             ..+|++|+.|+.|++||++++..   .+..+.+ |...|.++.|. +
T Consensus       283 ~~~~~~~~~~v~~~~~~~~~-------------~~~l~~g~~dg~i~vwd~~~~~~---~~~~~~~~~~~~v~~~~~~-~  345 (420)
T 3vl1_A          283 IQLPSKFTCSCNSLTVDGNN-------------ANYIYAGYENGMLAQWDLRSPEC---PVGEFLINEGTPINNVYFA-A  345 (420)
T ss_dssp             EEECCTTSSCEEEEEECSSC-------------TTEEEEEETTSEEEEEETTCTTS---CSEEEEESTTSCEEEEEEE-T
T ss_pred             EEcccccCCCceeEEEeCCC-------------CCEEEEEeCCCeEEEEEcCCCcC---chhhhhccCCCCceEEEeC-C
Confidence            33444688899999999864             13899999999999999987632   2344555 67889998665 4


Q ss_pred             CCCCccEEEEEecCCeEEEEEeccCCcce------eeeeeccCCCcEEEEEEccCCC----EEEEecCCceEEeeec
Q 022111          221 LGLPKSTIASASQDGTVVIWTCAKEGEQW------EGRVLKDFKTPVWSVSWSLTGN----LLAVADANNVTLWKEA  287 (302)
Q Consensus       221 ~~~~~~~l~s~s~D~~i~iwd~~~~~~~~------~~~~~~~~~~~v~~~~~spdg~----~la~~~~d~i~~w~~~  287 (302)
                      +    ..|++++.|+.|++|++.......      .......+...|.+++|+|+++    ++++++.+.+.+|+..
T Consensus       346 ~----~~l~s~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~g~l~a~g~~g~~~~~~~~  418 (420)
T 3vl1_A          346 G----ALFVSSGFDTSIKLDIISDPESERPAIEFETPTFLVSNDDAVSQFCYVSDDESNGEVLEVGKNNFCALYNLS  418 (420)
T ss_dssp             T----EEEEEETTTEEEEEEEECCTTCCSCEECTTSCEEECCSSCCCCEEEEECCSSSSCEEEEEETTTEEEEEESC
T ss_pred             C----CEEEEecCCccEEEEeccCCCCCccceeccCccEEccCCcceEEEEEccCCCCcceEEEEcCCceEEEEecc
Confidence            3    789999999999999987632111      1123345677899999999998    6666655589999864

>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}

Probab=100.00  E-value=7.9e-34  Score=249.84  Aligned_cols=205  Identities=23%  Similarity=0.366  Sum_probs=173.7

Q ss_pred             ccccccceeEEEEccCCCEEEEeeCCCcEEEEeecCCCceEEEEecCcccCeEEEEeeCCCCCCEEEEEeCCCeEEEEEc
Q 022111            7 ETGHEDTVHDVAMDFYGKRLATASSDSSIKIIGLSNSASQHLATLKGHRGPVWQVAWAHPKFGSILASCSYDGQVIIWKE   86 (302)
Q Consensus         7 ~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~s~D~~i~iwd~   86 (302)
                      +.+|...|.+++|+++++.|++++.|++|++||+..  .+.+..+.+|...|.+++|++..++++|++|+.|++|++||+
T Consensus       150 ~~~h~~~v~~~~~~~~~~~l~t~s~D~~v~lwd~~~--~~~~~~~~~h~~~v~~~~~~~~~~g~~l~sgs~Dg~v~~wd~  227 (354)
T 2pbi_B          150 VAMHTNYLSACSFTNSDMQILTASGDGTCALWDVES--GQLLQSFHGHGADVLCLDLAPSETGNTFVSGGCDKKAMVWDM  227 (354)
T ss_dssp             EEECSSCEEEEEECSSSSEEEEEETTSEEEEEETTT--CCEEEEEECCSSCEEEEEECCCSSCCEEEEEETTSCEEEEET
T ss_pred             eeccCCcEEEEEEeCCCCEEEEEeCCCcEEEEeCCC--CeEEEEEcCCCCCeEEEEEEeCCCCCEEEEEeCCCeEEEEEC
Confidence            457999999999999999999999999999999865  356778899999999999976545789999999999999999


Q ss_pred             CCCCceeEEEEecCCCCCeeEEEecCCCCCcEEEEEecCCcEEEEEecCCCCeeeeeecccCCCCeEEEEeCCCCCCCce
Q 022111           87 GNQNDWTQAHTFNDHKSSVNSIAWAPHELGLSLACGSSDGNISVFTATADGGWDTTRIDQAHPVGVTSVSWAPAMAPGAL  166 (302)
Q Consensus        87 ~~~~~~~~~~~~~~h~~~i~~l~~~pd~~~~~l~sg~~d~~v~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~  166 (302)
                      +++   .+...+.+|...|++++|+|+  +.+|++|+.|++|++||++......... ...+...+.++.|+|+      
T Consensus       228 ~~~---~~~~~~~~h~~~v~~v~~~p~--~~~l~s~s~D~~v~lwd~~~~~~~~~~~-~~~~~~~~~~~~~s~~------  295 (354)
T 2pbi_B          228 RSG---QCVQAFETHESDVNSVRYYPS--GDAFASGSDDATCRLYDLRADREVAIYS-KESIIFGASSVDFSLS------  295 (354)
T ss_dssp             TTC---CEEEEECCCSSCEEEEEECTT--SSEEEEEETTSCEEEEETTTTEEEEEEC-CTTCCSCEEEEEECTT------
T ss_pred             CCC---cEEEEecCCCCCeEEEEEeCC--CCEEEEEeCCCeEEEEECCCCcEEEEEc-CCCcccceeEEEEeCC------
Confidence            875   367788899999999999998  6699999999999999987543221111 1123456889999986      


Q ss_pred             eecccCCCceeEEEeeCCCcEEEEEEecCccccccccccccCCCceeEEEeeCCCCCCccEEEEEecCCeEEEEE
Q 022111          167 VGLGLLDPVQKLASCGCDNTVKVWKMYNGIWKMDCFPALQMHSDWVRSVAWAPNLGLPKSTIASASQDGTVVIWT  241 (302)
Q Consensus       167 ~~~~~~~~~~~l~s~~~D~~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~l~s~s~D~~i~iwd  241 (302)
                              +.+|++|+.|++|++||+.++    ..+..+.+|.+.|.+++|+|++    .+|++|+.|++|+||+
T Consensus       296 --------g~~l~~g~~d~~i~vwd~~~~----~~~~~l~~h~~~v~~l~~spdg----~~l~sgs~D~~v~vW~  354 (354)
T 2pbi_B          296 --------GRLLFAGYNDYTINVWDVLKG----SRVSILFGHENRVSTLRVSPDG----TAFCSGSWDHTLRVWA  354 (354)
T ss_dssp             --------SSEEEEEETTSCEEEEETTTC----SEEEEECCCSSCEEEEEECTTS----SCEEEEETTSEEEEEC
T ss_pred             --------CCEEEEEECCCcEEEEECCCC----ceEEEEECCCCcEEEEEECCCC----CEEEEEcCCCCEEecC
Confidence                    478999999999999999765    3455678999999999999996    7799999999999995

>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A

Probab=100.00  E-value=4.3e-34  Score=247.58  Aligned_cols=225  Identities=28%  Similarity=0.464  Sum_probs=178.5

Q ss_pred             cccccccceeEEEEcc--CCCEEEEeeCCCcEEEEeecCCCceEEEEecCcccCeEEEEeeCCCCCCEEEEEeCCCeEEE
Q 022111            6 IETGHEDTVHDVAMDF--YGKRLATASSDSSIKIIGLSNSASQHLATLKGHRGPVWQVAWAHPKFGSILASCSYDGQVII   83 (302)
Q Consensus         6 ~~~~h~~~v~~~~~s~--~~~~l~s~~~d~~v~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~s~D~~i~i   83 (302)
                      .+.+|.+.|++++|++  ++++|+||+.|++|++||+..+.......+.+|...|.+++|+|+..+.+|++|+.|++|++
T Consensus        52 ~l~gH~~~V~~v~~~~~~~~~~l~s~s~D~~v~iWd~~~~~~~~~~~~~~h~~~V~~v~~~p~~~g~~lasgs~D~~i~l  131 (316)
T 3bg1_A           52 DLRGHEGPVWQVAWAHPMYGNILASCSYDRKVIIWREENGTWEKSHEHAGHDSSVNSVCWAPHDYGLILACGSSDGAISL  131 (316)
T ss_dssp             EEECCSSCEEEEEECCGGGSSCEEEEETTSCEEEECCSSSCCCEEEEECCCSSCCCEEEECCTTTCSCEEEECSSSCEEE
T ss_pred             EEcCCCccEEEEEeCCCCCCCEEEEEECCCEEEEEECCCCcceEEEEccCCCCceEEEEECCCCCCcEEEEEcCCCCEEE
Confidence            4668999999999975  48999999999999999987644345667889999999999987544789999999999999


Q ss_pred             EEcCCCCceeEEEEecCCCCCeeEEEecCCCC---------------CcEEEEEecCCcEEEEEecCCCCeeeeeecccC
Q 022111           84 WKEGNQNDWTQAHTFNDHKSSVNSIAWAPHEL---------------GLSLACGSSDGNISVFTATADGGWDTTRIDQAH  148 (302)
Q Consensus        84 wd~~~~~~~~~~~~~~~h~~~i~~l~~~pd~~---------------~~~l~sg~~d~~v~~~~~~~~~~~~~~~~~~~h  148 (302)
                      ||++....+.....+.+|...|.+++|+|+..               +.+|++|+.|++|++||......+.......+|
T Consensus       132 wd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~l~~h  211 (316)
T 3bg1_A          132 LTYTGEGQWEVKKINNAHTIGCNAVSWAPAVVPGSLIDHPSGQKPNYIKRFASGGCDNLIKLWKEEEDGQWKEEQKLEAH  211 (316)
T ss_dssp             EEECSSSCEEECCBTTSSSSCBCCCEECCCCCC------CCSCCCCCCCBEECCBTTSBCCEEEECTTSCEEEEECCBCC
T ss_pred             EecCCCCCcceeeeeccccCCcceEEEccccCCccccccccccCccccceEEEecCCCeEEEEEeCCCCccceeeecccC
Confidence            99976544444556778999999999999721               357999999999999999654333332222479


Q ss_pred             CCCeEEEEeCCCCCCCceeecccCCCceeEEEeeCCCcEEEEEEecCccccccccccccCCCceeEEEeeCCCCCCccEE
Q 022111          149 PVGVTSVSWAPAMAPGALVGLGLLDPVQKLASCGCDNTVKVWKMYNGIWKMDCFPALQMHSDWVRSVAWAPNLGLPKSTI  228 (302)
Q Consensus       149 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~D~~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~l  228 (302)
                      ...|.+++|+|+...          ++.+|++|+.|++|+|||+.+..........+.+|.+.|.+++|+|++    .+|
T Consensus       212 ~~~V~~v~~sp~~~~----------~~~~las~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~g----~~l  277 (316)
T 3bg1_A          212 SDWVRDVAWAPSIGL----------PTSTIASCSQDGRVFIWTCDDASSNTWSPKLLHKFNDVVWHVSWSITA----NIL  277 (316)
T ss_dssp             SSCEEEEECCCCSSC----------SCCEEEEEETTCEEEEEECSSTTCCCCBCCEEEECSSCEEEEEECTTT----CCE
T ss_pred             CCceEEEEecCCCCC----------CCceEEEEcCCCeEEEEEccCccccchhhhhhhcCCCcEEEEEEcCCC----CEE
Confidence            999999999996411          136899999999999999876311101122345789999999999996    779


Q ss_pred             EEEecCCeEEEEEecc
Q 022111          229 ASASQDGTVVIWTCAK  244 (302)
Q Consensus       229 ~s~s~D~~i~iwd~~~  244 (302)
                      |+++.|++|+||+...
T Consensus       278 as~~~D~~v~lw~~~~  293 (316)
T 3bg1_A          278 AVSGGDNKVTLWKESV  293 (316)
T ss_dssp             EEEESSSCEEEEEECT
T ss_pred             EEEcCCCeEEEEEECC
Confidence            9999999999999764

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=100.00  E-value=3.6e-33  Score=269.79  Aligned_cols=256  Identities=18%  Similarity=0.201  Sum_probs=210.2

Q ss_pred             CCcccccccccceeEEEEccCCCEEEEeeCCCcEEEEeecCCCceEEEEecCcccCeEEEEeeCCCCCCEEEEEeCCCeE
Q 022111            2 PAQKIETGHEDTVHDVAMDFYGKRLATASSDSSIKIIGLSNSASQHLATLKGHRGPVWQVAWAHPKFGSILASCSYDGQV   81 (302)
Q Consensus         2 ~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~s~D~~i   81 (302)
                      ..++++.+|.+.|++++|+|++++||+++.|+.|+|||+..  +..+..+.+|.+.|.+++|+++  +++|++++.|+.|
T Consensus         4 ~~~~~~~~h~~~v~~i~~sp~~~~la~~~~~g~v~iwd~~~--~~~~~~~~~~~~~v~~~~~s~~--~~~l~~~~~dg~i   79 (814)
T 3mkq_A            4 DIKKTFSNRSDRVKGIDFHPTEPWVLTTLYSGRVEIWNYET--QVEVRSIQVTETPVRAGKFIAR--KNWIIVGSDDFRI   79 (814)
T ss_dssp             CCEEEEEEECSCEEEEEECSSSSEEEEEETTSEEEEEETTT--TEEEEEEECCSSCEEEEEEEGG--GTEEEEEETTSEE
T ss_pred             ccceeeecCCCceEEEEECCCCCEEEEEeCCCEEEEEECCC--CceEEEEecCCCcEEEEEEeCC--CCEEEEEeCCCeE
Confidence            34567889999999999999999999999999999999865  4567788899999999999874  7899999999999


Q ss_pred             EEEEcCCCCceeEEEEecCCCCCeeEEEecCCCCCcEEEEEecCCcEEEEEecCCCCeeeeeecccCCCCeEEEEeCCCC
Q 022111           82 IIWKEGNQNDWTQAHTFNDHKSSVNSIAWAPHELGLSLACGSSDGNISVFTATADGGWDTTRIDQAHPVGVTSVSWAPAM  161 (302)
Q Consensus        82 ~iwd~~~~~~~~~~~~~~~h~~~i~~l~~~pd~~~~~l~sg~~d~~v~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~  161 (302)
                      ++||+.++.   ....+.+|.+.|.+++|+|+  +..|++++.|+.|++|++..... ....+ ..|...+.+++|+|..
T Consensus        80 ~vw~~~~~~---~~~~~~~~~~~v~~~~~s~~--~~~l~~~~~dg~i~vw~~~~~~~-~~~~~-~~~~~~v~~~~~~p~~  152 (814)
T 3mkq_A           80 RVFNYNTGE---KVVDFEAHPDYIRSIAVHPT--KPYVLSGSDDLTVKLWNWENNWA-LEQTF-EGHEHFVMCVAFNPKD  152 (814)
T ss_dssp             EEEETTTCC---EEEEEECCSSCEEEEEECSS--SSEEEEEETTSEEEEEEGGGTSE-EEEEE-ECCSSCEEEEEEETTE
T ss_pred             EEEECCCCc---EEEEEecCCCCEEEEEEeCC--CCEEEEEcCCCEEEEEECCCCce-EEEEE-cCCCCcEEEEEEEcCC
Confidence            999997753   56677889999999999998  66899999999999999875422 22233 3788899999999832


Q ss_pred             CCCceeecccCCCceeEEEeeCCCcEEEEEEecCccccccccccc-cCCCceeEEEeeCCCCCCccEEEEEecCCeEEEE
Q 022111          162 APGALVGLGLLDPVQKLASCGCDNTVKVWKMYNGIWKMDCFPALQ-MHSDWVRSVAWAPNLGLPKSTIASASQDGTVVIW  240 (302)
Q Consensus       162 ~~~~~~~~~~~~~~~~l~s~~~D~~v~iwd~~~~~~~~~~~~~~~-~h~~~v~~v~~~p~~~~~~~~l~s~s~D~~i~iw  240 (302)
                                   +..|++++.|+.|++||+.++.    ....+. .|...|.+++|+|..  ++..|++++.|+.|++|
T Consensus       153 -------------~~~l~~~~~dg~v~vwd~~~~~----~~~~~~~~~~~~v~~~~~~~~~--~~~~l~~~~~dg~i~~~  213 (814)
T 3mkq_A          153 -------------PSTFASGCLDRTVKVWSLGQST----PNFTLTTGQERGVNYVDYYPLP--DKPYMITASDDLTIKIW  213 (814)
T ss_dssp             -------------EEEEEEEETTSEEEEEETTCSS----CSEEEECCCTTCCCEEEECCST--TCCEEEEECTTSEEEEE
T ss_pred             -------------CCEEEEEeCCCeEEEEECCCCc----ceeEEecCCCCCEEEEEEEECC--CCCEEEEEeCCCEEEEE
Confidence                         4789999999999999987653    222333 345889999999931  14789999999999999


Q ss_pred             EeccCCcceeeeeeccCCCcEEEEEEccCCCEEEEecCC-ceEEeeecCCc
Q 022111          241 TCAKEGEQWEGRVLKDFKTPVWSVSWSLTGNLLAVADAN-NVTLWKEAVDG  290 (302)
Q Consensus       241 d~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~la~~~~d-~i~~w~~~~~~  290 (302)
                      |++....   ......+..+|.+++|+|+|++|++++.| .|++|+.....
T Consensus       214 d~~~~~~---~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~v~vwd~~~~~  261 (814)
T 3mkq_A          214 DYQTKSC---VATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYK  261 (814)
T ss_dssp             ETTTTEE---EEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCS
T ss_pred             ECCCCcE---EEEEcCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCc
Confidence            9875421   23345677899999999999999999988 69999986533

>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A

Probab=100.00  E-value=2.6e-33  Score=250.18  Aligned_cols=260  Identities=16%  Similarity=0.245  Sum_probs=200.5

Q ss_pred             cccccccceeEEEEcc-CCCEEEEeeCCCcEEEEeecCCCc-----eEEEEecCcccCeEEEEeeCCCCCCEEEEEeCCC
Q 022111            6 IETGHEDTVHDVAMDF-YGKRLATASSDSSIKIIGLSNSAS-----QHLATLKGHRGPVWQVAWAHPKFGSILASCSYDG   79 (302)
Q Consensus         6 ~~~~h~~~v~~~~~s~-~~~~l~s~~~d~~v~lw~~~~~~~-----~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~s~D~   79 (302)
                      .+.+|.+.|++++|+| ++++|++|+.|++|++|++.....     +++..+.+|...|.+++|+++ ..++|++++.|+
T Consensus        76 ~~~~h~~~V~~~~~~p~~~~~l~s~s~dg~v~vw~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~-~~~~l~s~~~dg  154 (402)
T 2aq5_A           76 LVCGHTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGGLVLPLREPVITLEGHTKRVGIVAWHPT-AQNVLLSAGCDN  154 (402)
T ss_dssp             CBCCCSSCEEEEEECTTCTTEEEEEETTSEEEEEECCTTCCSSCBCSCSEEEECCSSCEEEEEECSS-BTTEEEEEETTS
T ss_pred             eEecCCCCEEEEEeCCCCCCEEEEEeCCCeEEEEEccCCCCccccCCceEEecCCCCeEEEEEECcC-CCCEEEEEcCCC
Confidence            4668999999999999 899999999999999999865421     356778899999999999864 236999999999


Q ss_pred             eEEEEEcCCCCceeEEEEe--cCCCCCeeEEEecCCCCCcEEEEEecCCcEEEEEecCCCCeeeeeecccCCCC-eEEEE
Q 022111           80 QVIIWKEGNQNDWTQAHTF--NDHKSSVNSIAWAPHELGLSLACGSSDGNISVFTATADGGWDTTRIDQAHPVG-VTSVS  156 (302)
Q Consensus        80 ~i~iwd~~~~~~~~~~~~~--~~h~~~i~~l~~~pd~~~~~l~sg~~d~~v~~~~~~~~~~~~~~~~~~~h~~~-v~~~~  156 (302)
                      +|++||+++.   .....+  ..|...|.+++|+|+  +.+|++++.|+.|++||++...  ....+...|... +.++.
T Consensus       155 ~i~iwd~~~~---~~~~~~~~~~~~~~v~~~~~~~~--~~~l~~~~~d~~i~iwd~~~~~--~~~~~~~~~~~~~~~~~~  227 (402)
T 2aq5_A          155 VILVWDVGTG---AAVLTLGPDVHPDTIYSVDWSRD--GALICTSCRDKRVRVIEPRKGT--VVAEKDRPHEGTRPVHAV  227 (402)
T ss_dssp             CEEEEETTTT---EEEEEECTTTCCSCEEEEEECTT--SSCEEEEETTSEEEEEETTTTE--EEEEEECSSCSSSCCEEE
T ss_pred             EEEEEECCCC---CccEEEecCCCCCceEEEEECCC--CCEEEEEecCCcEEEEeCCCCc--eeeeeccCCCCCcceEEE
Confidence            9999999765   356677  789999999999997  6689999999999999987542  223332356554 88999


Q ss_pred             eCCCCCCCceeecccCCCceeEEEe---eCCCcEEEEEEecCccccccccccccCCCceeEEEeeCCCCCCccEE-EEEe
Q 022111          157 WAPAMAPGALVGLGLLDPVQKLASC---GCDNTVKVWKMYNGIWKMDCFPALQMHSDWVRSVAWAPNLGLPKSTI-ASAS  232 (302)
Q Consensus       157 ~~~~~~~~~~~~~~~~~~~~~l~s~---~~D~~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~l-~s~s  232 (302)
                      |+|+              +.+|++|   +.|+.|++||+++......  .....|...|.+++|+|++    ..| ++|+
T Consensus       228 ~~~~--------------~~~l~~g~~~~~d~~i~iwd~~~~~~~~~--~~~~~~~~~v~~~~~s~~~----~~l~~~g~  287 (402)
T 2aq5_A          228 FVSE--------------GKILTTGFSRMSERQVALWDTKHLEEPLS--LQELDTSSGVLLPFFDPDT----NIVYLCGK  287 (402)
T ss_dssp             ECST--------------TEEEEEEECTTCCEEEEEEETTBCSSCSE--EEECCCCSSCEEEEEETTT----TEEEEEET
T ss_pred             EcCC--------------CcEEEEeccCCCCceEEEEcCccccCCce--EEeccCCCceeEEEEcCCC----CEEEEEEc
Confidence            9986              3788888   7899999999987532111  1112577789999999996    556 5677


Q ss_pred             cCCeEEEEEeccCCcceeeeeec--cCCCcEEEEEEccCCCEEEEecCCceEEeeecCCceEEEeee
Q 022111          233 QDGTVVIWTCAKEGEQWEGRVLK--DFKTPVWSVSWSLTGNLLAVADANNVTLWKEAVDGEWQQVSV  297 (302)
Q Consensus       233 ~D~~i~iwd~~~~~~~~~~~~~~--~~~~~v~~~~~spdg~~la~~~~d~i~~w~~~~~~~~~~~~~  297 (302)
                      .|+.|++||+.......  ..+.  .+..+|.+++|+|++.+++++ .+.+++|+... +..++...
T Consensus       288 ~dg~i~i~d~~~~~~~~--~~l~~~~~~~~v~~~~~sp~~~~~~s~-~~~~~~~~l~~-~~~~~i~~  350 (402)
T 2aq5_A          288 GDSSIRYFEITSEAPFL--HYLSMFSSKESQRGMGYMPKRGLEVNK-CEIARFYKLHE-RKCEPIAM  350 (402)
T ss_dssp             TCSCEEEEEECSSTTCE--EEEEEECCSSCCSEEEECCGGGSCGGG-TEEEEEEEEET-TEEEEEEE
T ss_pred             CCCeEEEEEecCCCcce--EeecccccCCcccceEEecccccceec-ceeEEEEEcCC-CcEEEEEE
Confidence            89999999998653211  1222  245789999999999987654 33799999864 45555433

>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}

Probab=100.00  E-value=2.5e-33  Score=245.46  Aligned_cols=255  Identities=17%  Similarity=0.258  Sum_probs=187.1

Q ss_pred             ccccccccceeEEEEccC---CCEEEEeeCCCcEEEEeecCCCceEEEEecCcccCeEEEEeeCCCCCCEEEEEeCCCeE
Q 022111            5 KIETGHEDTVHDVAMDFY---GKRLATASSDSSIKIIGLSNSASQHLATLKGHRGPVWQVAWAHPKFGSILASCSYDGQV   81 (302)
Q Consensus         5 ~~~~~h~~~v~~~~~s~~---~~~l~s~~~d~~v~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~s~D~~i   81 (302)
                      +++.+|.+.|++++|+|+   |++|++|+.|++|++|++..........+.+|.+.|.+++|+++  +++|++++.|+.|
T Consensus        33 ~~~~~h~~~v~~~~~~~~~~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~--~~~l~s~~~dg~v  110 (368)
T 3mmy_A           33 EVTSSPDDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQTIPKAQQMHTGPVLDVCWSDD--GSKVFTASCDKTA  110 (368)
T ss_dssp             ECSSCCSSCEEEEEECCTTSSSEEEEEEETTSEEEEEEECTTSCEEEEEEEECSSCEEEEEECTT--SSEEEEEETTSEE
T ss_pred             EeccCCCCceEEEEEcCCCCCceEEEEECCCCcEEEEEcCCCCceeEEEeccccCCEEEEEECcC--CCEEEEEcCCCcE
Confidence            456799999999999999   59999999999999999975333344678899999999999864  7899999999999


Q ss_pred             EEEEcCCCCceeEEEEecCCCCCeeEEEe--cCCCCCcEEEEEecCCcEEEEEecCCCCeeeeeecccCCCCeEEEEeCC
Q 022111           82 IIWKEGNQNDWTQAHTFNDHKSSVNSIAW--APHELGLSLACGSSDGNISVFTATADGGWDTTRIDQAHPVGVTSVSWAP  159 (302)
Q Consensus        82 ~iwd~~~~~~~~~~~~~~~h~~~i~~l~~--~pd~~~~~l~sg~~d~~v~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~  159 (302)
                      ++||+++..   .. .+..|...|.+++|  +|+  +.+|++++.|+.|++||++......  .+. .+ ..+.++.+.+
T Consensus       111 ~iwd~~~~~---~~-~~~~~~~~v~~~~~~~~~~--~~~l~~~~~dg~i~vwd~~~~~~~~--~~~-~~-~~~~~~~~~~  180 (368)
T 3mmy_A          111 KMWDLSSNQ---AI-QIAQHDAPVKTIHWIKAPN--YSCVMTGSWDKTLKFWDTRSSNPMM--VLQ-LP-ERCYCADVIY  180 (368)
T ss_dssp             EEEETTTTE---EE-EEEECSSCEEEEEEEECSS--CEEEEEEETTSEEEEECSSCSSCSE--EEE-CS-SCEEEEEEET
T ss_pred             EEEEcCCCC---ce-eeccccCceEEEEEEeCCC--CCEEEEccCCCcEEEEECCCCcEEE--EEe-cC-CCceEEEecC
Confidence            999997653   22 34569999999999  665  7789999999999999987543322  111 11 1222222221


Q ss_pred             CC-----------------C-------------CCceeecccCC--CceeEEEeeCCCcEEEEEEecCcccccccccccc
Q 022111          160 AM-----------------A-------------PGALVGLGLLD--PVQKLASCGCDNTVKVWKMYNGIWKMDCFPALQM  207 (302)
Q Consensus       160 ~~-----------------~-------------~~~~~~~~~~~--~~~~l~s~~~D~~v~iwd~~~~~~~~~~~~~~~~  207 (302)
                      ..                 .             ....+.+....  ....+++++.|+.|++||++.... ......+.+
T Consensus       181 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~~~-~~~~~~~~~  259 (368)
T 3mmy_A          181 PMAVVATAERGLIVYQLENQPSEFRRIESPLKHQHRCVAIFKDKQNKPTGFALGSIEGRVAIHYINPPNP-AKDNFTFKC  259 (368)
T ss_dssp             TEEEEEEGGGCEEEEECSSSCEEEEECCCSCSSCEEEEEEEECTTSCEEEEEEEETTSEEEEEESSCSCH-HHHSEEEEC
T ss_pred             CeeEEEeCCCcEEEEEeccccchhhhccccccCCCceEEEcccCCCCCCeEEEecCCCcEEEEecCCCCc-cccceeeee
Confidence            10                 0             00000000000  113399999999999999976521 123345556


Q ss_pred             CCC------------ceeEEEeeCCCCCCccEEEEEecCCeEEEEEeccCCcceeeeeeccCCCcEEEEEEccCCCEEEE
Q 022111          208 HSD------------WVRSVAWAPNLGLPKSTIASASQDGTVVIWTCAKEGEQWEGRVLKDFKTPVWSVSWSLTGNLLAV  275 (302)
Q Consensus       208 h~~------------~v~~v~~~p~~~~~~~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~la~  275 (302)
                      |..            .|.+++|+|++    .+|++++.|+.|++||++...   ....+..+..+|.+++|+|+|++|++
T Consensus       260 ~~~~~~~~~~~~~~~~v~~~~~sp~~----~~l~s~~~dg~i~iwd~~~~~---~~~~~~~~~~~v~~~~~s~~g~~l~~  332 (368)
T 3mmy_A          260 HRSNGTNTSAPQDIYAVNGIAFHPVH----GTLATVGSDGRFSFWDKDART---KLKTSEQLDQPISACCFNHNGNIFAY  332 (368)
T ss_dssp             SEEC----CCCEEECCEEEEEECTTT----CCEEEEETTSCEEEEETTTTE---EEEECCCCSSCEEEEEECTTSSCEEE
T ss_pred             eecccccccccccccceEEEEEecCC----CEEEEEccCCeEEEEECCCCc---EEEEecCCCCCceEEEECCCCCeEEE
Confidence            655            79999999985    679999999999999997542   12334577889999999999999999


Q ss_pred             ecCC
Q 022111          276 ADAN  279 (302)
Q Consensus       276 ~~~d  279 (302)
                      ++.|
T Consensus       333 ~s~d  336 (368)
T 3mmy_A          333 ASSY  336 (368)
T ss_dssp             EECC
T ss_pred             Eecc
Confidence            9876

>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A

Probab=100.00  E-value=1.6e-34  Score=257.81  Aligned_cols=252  Identities=17%  Similarity=0.229  Sum_probs=168.9

Q ss_pred             cccceeEEEEccCCCEEEEeeCCCcEEEEeecCCCce---EEEEecCcccCeEEEEeeC------CCCCCEEEEEeCCCe
Q 022111           10 HEDTVHDVAMDFYGKRLATASSDSSIKIIGLSNSASQ---HLATLKGHRGPVWQVAWAH------PKFGSILASCSYDGQ   80 (302)
Q Consensus        10 h~~~v~~~~~s~~~~~l~s~~~d~~v~lw~~~~~~~~---~~~~~~~h~~~v~~v~~~~------~~~~~~l~s~s~D~~   80 (302)
                      |...+....+++++++||+++.|++|+|||...+...   .+..+.+|.+.|++|+|+|      +.++++|||||.|++
T Consensus        88 ~~~~~~~~~~~~~~~~las~~~d~~v~lw~~~~~~~~~~~~~~~~~gH~~~v~~v~~~p~~~~~~~~d~~~las~s~D~t  167 (393)
T 4gq1_A           88 HDGDGNVNSSPVYSLFLACVCQDNTVRLIITKNETIITQHVLGGKSGHHNFVNDIDIADVYSADNRLAEQVIASVGDDCT  167 (393)
T ss_dssp             ---------CCEEEEEEEEEETTSCEEEEEEETTEEEEEEEECTTTSCSSCEEEEEEEEEECTTCSEEEEEEEEEETTSE
T ss_pred             cCCCcceeecCCCCCEEEEEeCCCcEEEEECCCCccceeeeecccCCCCCceEEEEEccccccccCCCCCEEEEEECCCe
Confidence            4444444555667789999999999999998764322   2345689999999999985      124789999999999


Q ss_pred             EEEEEcCCCCceeEEEEecCCCCCeeEEEecCCCCCcEEEEEecCCcEEEEEecCCCCeee-ee----------------
Q 022111           81 VIIWKEGNQNDWTQAHTFNDHKSSVNSIAWAPHELGLSLACGSSDGNISVFTATADGGWDT-TR----------------  143 (302)
Q Consensus        81 i~iwd~~~~~~~~~~~~~~~h~~~i~~l~~~pd~~~~~l~sg~~d~~v~~~~~~~~~~~~~-~~----------------  143 (302)
                      |+|||+++..   +...+..|..+|.+++|+|+. ..+|++|+.|++|++||++....... ..                
T Consensus       168 v~~Wd~~~~~---~~~~~~~~~~~v~~v~~~p~~-~~~l~~~~~d~~v~~wd~~t~~~~~~~~~~~~~~~~~~~s~~~~~  243 (393)
T 4gq1_A          168 LIIWRLTDEG---PILAGYPLSSPGISVQFRPSN-PNQLIVGERNGNIRIFDWTLNLSAEENSQTELVKNPWLLTLNTLP  243 (393)
T ss_dssp             EEEEEEETTE---EEEEEEECSSCEEEEEEETTE-EEEEEEEETTSEEEEEETTCCC----------CSCCCSEEEESGG
T ss_pred             EEEEECCCCc---eeeeecCCCCCcEEEEECCCC-CceEEecCCCCEEEEEECCCCcccccccccCCcccceEEeccccc
Confidence            9999997653   445556688999999999973 35799999999999999875432110 00                


Q ss_pred             -----ecccCCCCeEEEEeCCCCCCCceeecccCCCceeEEEeeCCCcEEEEEEecCccccccccccccCCCceeEE---
Q 022111          144 -----IDQAHPVGVTSVSWAPAMAPGALVGLGLLDPVQKLASCGCDNTVKVWKMYNGIWKMDCFPALQMHSDWVRSV---  215 (302)
Q Consensus       144 -----~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~D~~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v---  215 (302)
                           ...+|...+.++.|++             +++..|++++.|+++++||+..+.    ....+..|...+..+   
T Consensus       244 ~~~~~~~~~~~~~v~~v~~~~-------------~dg~~l~s~s~d~~i~vwd~~~~~----~~~~l~~~~~~~~~~~~~  306 (393)
T 4gq1_A          244 LVNTCHSSGIASSLANVRWIG-------------SDGSGILAMCKSGAWLRWNLFANN----DYNEISDSTMKLGPKNLL  306 (393)
T ss_dssp             GC------CCSSSCSEEEEET-------------TTTCEEEEECTTSEEEEEEC-----------------------CCS
T ss_pred             ceeeeecccccccceeeeeec-------------CCCCEEEEEeCCCCEEEEECccCC----CCceEeeecCccccEEEc
Confidence                 0113444555666542             235889999999999999987652    112223333333333   


Q ss_pred             ---------------EeeCCCCCCccEEEEEecCCeEEEEEeccCCcceeeeeeccCCCcEEEEEEccCCCEEEEecCCc
Q 022111          216 ---------------AWAPNLGLPKSTIASASQDGTVVIWTCAKEGEQWEGRVLKDFKTPVWSVSWSLTGNLLAVADANN  280 (302)
Q Consensus       216 ---------------~~~p~~~~~~~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~la~~~~d~  280 (302)
                                     .|+|..  ++.++++|+.|++|+|||+.....   ......+..+|.+++|||||++||+|++++
T Consensus       307 ~~~~~~~~~~~~~~~~~~~~~--~~~~~~sgs~Dg~V~lwd~~~~~~---~~~~~~~~~~V~svafspdG~~LA~as~~G  381 (393)
T 4gq1_A          307 PNVQGISLFPSLLGACPHPRY--MDYFATAHSQHGLIQLINTYEKDS---NSIPIQLGMPIVDFCWHQDGSHLAIATEGS  381 (393)
T ss_dssp             CSEEEECSSCCSSCCEECSSC--TTEEEEEETTTTEEEEEETTCTTC---CEEEEECSSCEEEEEECTTSSEEEEEESSE
T ss_pred             cccccccccCcceeEEEccCC--CCEEEEEECCCCEEEEEECCCCcE---EEEecCCCCcEEEEEEcCCCCEEEEEeCCC
Confidence                           344322  245788999999999999876432   123356778999999999999999999889


Q ss_pred             eEEeeec
Q 022111          281 VTLWKEA  287 (302)
Q Consensus       281 i~~w~~~  287 (302)
                      +.+|+..
T Consensus       382 v~lvrL~  388 (393)
T 4gq1_A          382 VLLTRLM  388 (393)
T ss_dssp             EEEEEEG
T ss_pred             eEEEEEe
Confidence            9999864

>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A

Probab=100.00  E-value=4.2e-33  Score=242.37  Aligned_cols=253  Identities=15%  Similarity=0.138  Sum_probs=201.0

Q ss_pred             CCCcccccccccceeEEEEccCCCEEEEeeCCCcEEEEeecCCC-ceEEEEecCcccCeEEEEeeCCCCCC-EEEEEeCC
Q 022111            1 MPAQKIETGHEDTVHDVAMDFYGKRLATASSDSSIKIIGLSNSA-SQHLATLKGHRGPVWQVAWAHPKFGS-ILASCSYD   78 (302)
Q Consensus         1 ~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~lw~~~~~~-~~~~~~~~~h~~~v~~v~~~~~~~~~-~l~s~s~D   78 (302)
                      |...++..+|.+.|++++|+|++++|++++.|+.|++|++.... ......+.+|...|.+++|+++  ++ +|++++.|
T Consensus         1 m~~~~~~~~h~~~v~~~~~s~~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~~~~l~~~~~d   78 (342)
T 1yfq_A            1 MQIVQIEQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDN--TDLQIYVGTVQ   78 (342)
T ss_dssp             CEEEECSSCCSSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEES--SSEEEEEEETT
T ss_pred             CcceecccCCCCcEEEEEEcCCCCEEEEEcCCCeEEEEEeCCCCccccceeeeecCCceEEEEECCC--CCcEEEEEcCC
Confidence            44456677999999999999999999999999999999997643 1234455689999999999864  78 99999999


Q ss_pred             CeEEEEEc-CCCCceeEEEEecC--CCCCeeEEEecCCCCCcEEEEEecCCcEEEEEecC---------CCCeeeeeecc
Q 022111           79 GQVIIWKE-GNQNDWTQAHTFND--HKSSVNSIAWAPHELGLSLACGSSDGNISVFTATA---------DGGWDTTRIDQ  146 (302)
Q Consensus        79 ~~i~iwd~-~~~~~~~~~~~~~~--h~~~i~~l~~~pd~~~~~l~sg~~d~~v~~~~~~~---------~~~~~~~~~~~  146 (302)
                      +.|++||+ ....    ...+..  |...|.+++|+|   +..+++++.|+.|++||++.         ...  ...+  
T Consensus        79 g~i~~wd~~~~~~----~~~~~~~~~~~~v~~l~~~~---~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~--~~~~--  147 (342)
T 1yfq_A           79 GEILKVDLIGSPS----FQALTNNEANLGICRICKYG---DDKLIAASWDGLIEVIDPRNYGDGVIAVKNLN--SNNT--  147 (342)
T ss_dssp             SCEEEECSSSSSS----EEECBSCCCCSCEEEEEEET---TTEEEEEETTSEEEEECHHHHTTBCEEEEESC--SSSS--
T ss_pred             CeEEEEEeccCCc----eEeccccCCCCceEEEEeCC---CCEEEEEcCCCeEEEEcccccccccccccCCe--eeEE--
Confidence            99999998 7652    366778  999999999998   35899999999999999874         211  1122  


Q ss_pred             cCCCCeEEEEeCCCCCCCceeecccCCCceeEEEeeCCCcEEEEEEec-CccccccccccccCCCceeEEEeeC-CCCCC
Q 022111          147 AHPVGVTSVSWAPAMAPGALVGLGLLDPVQKLASCGCDNTVKVWKMYN-GIWKMDCFPALQMHSDWVRSVAWAP-NLGLP  224 (302)
Q Consensus       147 ~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~D~~v~iwd~~~-~~~~~~~~~~~~~h~~~v~~v~~~p-~~~~~  224 (302)
                      .|...+.+++|+|+                .|++++.|+.|++||+++ ....  .......|...|.+++|+| ++   
T Consensus       148 ~~~~~v~~~~~~~~----------------~l~~~~~d~~i~i~d~~~~~~~~--~~~~~~~~~~~i~~i~~~~~~~---  206 (342)
T 1yfq_A          148 KVKNKIFTMDTNSS----------------RLIVGMNNSQVQWFRLPLCEDDN--GTIEESGLKYQIRDVALLPKEQ---  206 (342)
T ss_dssp             SSCCCEEEEEECSS----------------EEEEEESTTEEEEEESSCCTTCC--CEEEECSCSSCEEEEEECSGGG---
T ss_pred             eeCCceEEEEecCC----------------cEEEEeCCCeEEEEECCcccccc--ceeeecCCCCceeEEEECCCCC---
Confidence            37778999999873                289999999999999987 4211  1123356888999999999 85   


Q ss_pred             ccEEEEEecCCeEEEEEeccC-----CcceeeeeeccC---------CCcEEEEEEccCCCEEEEecCC-ceEEeeecCC
Q 022111          225 KSTIASASQDGTVVIWTCAKE-----GEQWEGRVLKDF---------KTPVWSVSWSLTGNLLAVADAN-NVTLWKEAVD  289 (302)
Q Consensus       225 ~~~l~s~s~D~~i~iwd~~~~-----~~~~~~~~~~~~---------~~~v~~~~~spdg~~la~~~~d-~i~~w~~~~~  289 (302)
                       ..|++++.|+.|++|+++..     ...  ...+..+         ..+|.+++|+|++++|++++.| .|++|+....
T Consensus       207 -~~l~~~~~dg~i~i~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~~  283 (342)
T 1yfq_A          207 -EGYACSSIDGRVAVEFFDDQGDDYNSSK--RFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTR  283 (342)
T ss_dssp             -CEEEEEETTSEEEEEECCTTCCSTTCTT--CEEEECCCCCTTCCSSCCCEEEEEECTTTCCEEEEETTSCEEEEETTTT
T ss_pred             -CEEEEEecCCcEEEEEEcCCCccccccc--ceeeecccccccccccceeEEEEEEcCCCCEEEEecCCceEEEEcCccH
Confidence             78999999999999999764     111  1222333         3389999999999999999988 7999998643


Q ss_pred             c
Q 022111          290 G  290 (302)
Q Consensus       290 ~  290 (302)
                      .
T Consensus       284 ~  284 (342)
T 1yfq_A          284 K  284 (342)
T ss_dssp             E
T ss_pred             h
Confidence            3

>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*

Probab=100.00  E-value=2e-33  Score=249.01  Aligned_cols=244  Identities=17%  Similarity=0.173  Sum_probs=185.5

Q ss_pred             cccccceeEEEEcc-CCCEEEEeeCCCcEEEEeecCCCceEEEEecCcccCeEEEEeeCCCCCCEEEEEeCCCeEEEEEc
Q 022111            8 TGHEDTVHDVAMDF-YGKRLATASSDSSIKIIGLSNSASQHLATLKGHRGPVWQVAWAHPKFGSILASCSYDGQVIIWKE   86 (302)
Q Consensus         8 ~~h~~~v~~~~~s~-~~~~l~s~~~d~~v~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~s~D~~i~iwd~   86 (302)
                      .+|...|.+++|+| ++++|++++.|++|++||+.......+....+|...|.+++|+++  +++|++++.|+.|++||+
T Consensus       115 ~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~--~~~l~~~~~d~~i~i~d~  192 (383)
T 3ei3_B          115 MGPGDAITGMKFNQFNTNQLFVSSIRGATTLRDFSGSVIQVFAKTDSWDYWYCCVDVSVS--RQMLATGDSTGRLLLLGL  192 (383)
T ss_dssp             CSTTCBEEEEEEETTEEEEEEEEETTTEEEEEETTSCEEEEEECCCCSSCCEEEEEEETT--TTEEEEEETTSEEEEEET
T ss_pred             CCcCCceeEEEeCCCCCCEEEEEeCCCEEEEEECCCCceEEEeccCCCCCCeEEEEECCC--CCEEEEECCCCCEEEEEC
Confidence            37999999999999 679999999999999999975322222222345588999999874  789999999999999998


Q ss_pred             CCCCceeEEEEecCCCCCeeEEEecCCCCCc-EEEEEecCCcEEEEEecCCCC-eeeeeecccCCCCeEEEEeCC-CCCC
Q 022111           87 GNQNDWTQAHTFNDHKSSVNSIAWAPHELGL-SLACGSSDGNISVFTATADGG-WDTTRIDQAHPVGVTSVSWAP-AMAP  163 (302)
Q Consensus        87 ~~~~~~~~~~~~~~h~~~i~~l~~~pd~~~~-~l~sg~~d~~v~~~~~~~~~~-~~~~~~~~~h~~~v~~~~~~~-~~~~  163 (302)
                      +.    .+...+..|...|.+++|+|+  +. ++++|+.|+.|++||++.... ....... .|...|.+++|+| +   
T Consensus       193 ~~----~~~~~~~~h~~~v~~~~~~~~--~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~-~~~~~v~~~~~s~~~---  262 (383)
T 3ei3_B          193 DG----HEIFKEKLHKAKVTHAEFNPR--CDWLMATSSVDATVKLWDLRNIKDKNSYIAEM-PHEKPVNAAYFNPTD---  262 (383)
T ss_dssp             TS----CEEEEEECSSSCEEEEEECSS--CTTEEEEEETTSEEEEEEGGGCCSTTCEEEEE-ECSSCEEEEEECTTT---
T ss_pred             CC----CEEEEeccCCCcEEEEEECCC--CCCEEEEEeCCCEEEEEeCCCCCcccceEEEe-cCCCceEEEEEcCCC---
Confidence            43    366778889999999999998  44 899999999999999985321 1111222 5888999999998 5   


Q ss_pred             CceeecccCCCceeEEEeeCCCcEEEEEEecCccccccccccc-------cCCCc----------eeEEEeeCCCCCCcc
Q 022111          164 GALVGLGLLDPVQKLASCGCDNTVKVWKMYNGIWKMDCFPALQ-------MHSDW----------VRSVAWAPNLGLPKS  226 (302)
Q Consensus       164 ~~~~~~~~~~~~~~l~s~~~D~~v~iwd~~~~~~~~~~~~~~~-------~h~~~----------v~~v~~~p~~~~~~~  226 (302)
                                 +.+|++++.|+.|++||++++..    ...+.       .|...          +..++|+|++    .
T Consensus       263 -----------~~~l~~~~~d~~i~iwd~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~s~dg----~  323 (383)
T 3ei3_B          263 -----------STKLLTTDQRNEIRVYSSYDWSK----PDQIIIHPHRQFQHLTPIKATWHPMYDLIVAGRYPDD----Q  323 (383)
T ss_dssp             -----------SCEEEEEESSSEEEEEETTBTTS----CSEEEECCBCCCTTSCCCCCEECSSSSEEEEECBCCT----T
T ss_pred             -----------CCEEEEEcCCCcEEEEECCCCcc----ccccccccccccccccceEEeccCCCCceEEEecCCc----c
Confidence                       37899999999999999987532    22222       23333          3446666664    2


Q ss_pred             EEEEEecCCeEEEEEeccCCcceeeeeecc--CCCcEEEEEEccCCCEEEEecCCceEEeeec
Q 022111          227 TIASASQDGTVVIWTCAKEGEQWEGRVLKD--FKTPVWSVSWSLTGNLLAVADANNVTLWKEA  287 (302)
Q Consensus       227 ~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~--~~~~v~~~~~spdg~~la~~~~d~i~~w~~~  287 (302)
                      +  +++.|+.|+|||+.+...  . ..+..  +...+..++|+|+|++|+++++..|++|+..
T Consensus       324 ~--s~s~d~~i~iwd~~~~~~--~-~~l~~~~~~~~~~~~~~s~~g~~l~s~sd~~i~iw~~~  381 (383)
T 3ei3_B          324 L--LLNDKRTIDIYDANSGGL--V-HQLRDPNAAGIISLNKFSPTGDVLASGMGFNILIWNRE  381 (383)
T ss_dssp             T--CTTCCCCEEEEETTTCCE--E-EEECBTTBCSCCCEEEECTTSSEEEEEETTEEEEEECC
T ss_pred             c--ccCCCCeEEEEecCCCce--e-eeecCCCCCceEEEEEEecCccEEEEecCCcEEEEecC
Confidence            3  788999999999976432  1 22232  4556777899999999999974489999975

>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}

Probab=100.00  E-value=2.7e-32  Score=233.99  Aligned_cols=246  Identities=17%  Similarity=0.213  Sum_probs=198.2

Q ss_pred             cccccccccceeEEEEccCCCEEEEeeCCCcEEEEeecCCCceEEEEecCcccCeEEEEeeCCCCCCEEEEEeCCCeEEE
Q 022111            4 QKIETGHEDTVHDVAMDFYGKRLATASSDSSIKIIGLSNSASQHLATLKGHRGPVWQVAWAHPKFGSILASCSYDGQVII   83 (302)
Q Consensus         4 ~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~s~D~~i~i   83 (302)
                      .+.+.+|.+.|++++| +++++|++++.|+.|++|++..  .+....+..|...|.+++|+++  +++|++++.|+.+++
T Consensus        11 ~~~l~~h~~~v~~~~~-~~~~~l~s~~~dg~v~vw~~~~--~~~~~~~~~~~~~v~~~~~~~~--~~~l~~~~~dg~i~~   85 (313)
T 3odt_A           11 SATLKGHDQDVRDVVA-VDDSKVASVSRDGTVRLWSKDD--QWLGTVVYTGQGFLNSVCYDSE--KELLLFGGKDTMING   85 (313)
T ss_dssp             EEEECCCSSCEEEEEE-EETTEEEEEETTSEEEEEEESS--SEEEEEEEECSSCEEEEEEETT--TTEEEEEETTSCEEE
T ss_pred             HHHhhCCCCCcEEEEe-cCCCEEEEEEcCCcEEEEECCC--CEEEEEeecCCccEEEEEECCC--CCEEEEecCCCeEEE
Confidence            3457799999999999 8999999999999999999965  3456677889999999999874  789999999999999


Q ss_pred             EEcCCCCceeEEEEecCCCCCeeEEEecCCCCCcEEEEEecCCcEEEEEecCCCCeeeeeecccCCCCeEEEEeCCCCCC
Q 022111           84 WKEGNQNDWTQAHTFNDHKSSVNSIAWAPHELGLSLACGSSDGNISVFTATADGGWDTTRIDQAHPVGVTSVSWAPAMAP  163 (302)
Q Consensus        84 wd~~~~~~~~~~~~~~~h~~~i~~l~~~pd~~~~~l~sg~~d~~v~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~  163 (302)
                      |++...........+..|...|.+++|.    +..+++++.|+.|++||.  .  .....+ ..|...+.++.|.|..  
T Consensus        86 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~----~~~l~~~~~d~~i~~~d~--~--~~~~~~-~~~~~~v~~~~~~~~~--  154 (313)
T 3odt_A           86 VPLFATSGEDPLYTLIGHQGNVCSLSFQ----DGVVISGSWDKTAKVWKE--G--SLVYNL-QAHNASVWDAKVVSFS--  154 (313)
T ss_dssp             EETTCCTTSCC-CEECCCSSCEEEEEEE----TTEEEEEETTSEEEEEET--T--EEEEEE-ECCSSCEEEEEEEETT--
T ss_pred             EEeeecCCCCcccchhhcccCEEEEEec----CCEEEEEeCCCCEEEEcC--C--cEEEec-ccCCCceeEEEEccCC--
Confidence            9987654444567788899999999994    348999999999999982  1  222333 3688899999998732  


Q ss_pred             CceeecccCCCceeEEEeeCCCcEEEEEEecCcccccccccccc-CCCceeEEEeeCCCCCCccEEEEEecCCeEEEEEe
Q 022111          164 GALVGLGLLDPVQKLASCGCDNTVKVWKMYNGIWKMDCFPALQM-HSDWVRSVAWAPNLGLPKSTIASASQDGTVVIWTC  242 (302)
Q Consensus       164 ~~~~~~~~~~~~~~l~s~~~D~~v~iwd~~~~~~~~~~~~~~~~-h~~~v~~v~~~p~~~~~~~~l~s~s~D~~i~iwd~  242 (302)
                                 +..|++++.|+.|++||...      ....+.. |...|.+++|+|++    . +++++.|+.|++||+
T Consensus       155 -----------~~~l~~~~~d~~i~i~d~~~------~~~~~~~~~~~~i~~~~~~~~~----~-~~~~~~dg~i~i~d~  212 (313)
T 3odt_A          155 -----------ENKFLTASADKTIKLWQNDK------VIKTFSGIHNDVVRHLAVVDDG----H-FISCSNDGLIKLVDM  212 (313)
T ss_dssp             -----------TTEEEEEETTSCEEEEETTE------EEEEECSSCSSCEEEEEEEETT----E-EEEEETTSEEEEEET
T ss_pred             -----------CCEEEEEECCCCEEEEecCc------eEEEEeccCcccEEEEEEcCCC----e-EEEccCCCeEEEEEC
Confidence                       47899999999999999332      2344555 89999999999985    4 999999999999999


Q ss_pred             ccCCcceeeeeeccCCCcEEEEEEccCCCEEEEecCC-ceEEeeecCCce
Q 022111          243 AKEGEQWEGRVLKDFKTPVWSVSWSLTGNLLAVADAN-NVTLWKEAVDGE  291 (302)
Q Consensus       243 ~~~~~~~~~~~~~~~~~~v~~~~~spdg~~la~~~~d-~i~~w~~~~~~~  291 (302)
                      +....   ......+..+|.+++|+|+|. |++++.| .|++|+......
T Consensus       213 ~~~~~---~~~~~~~~~~i~~~~~~~~~~-l~~~~~dg~v~iwd~~~~~~  258 (313)
T 3odt_A          213 HTGDV---LRTYEGHESFVYCIKLLPNGD-IVSCGEDRTVRIWSKENGSL  258 (313)
T ss_dssp             TTCCE---EEEEECCSSCEEEEEECTTSC-EEEEETTSEEEEECTTTCCE
T ss_pred             Cchhh---hhhhhcCCceEEEEEEecCCC-EEEEecCCEEEEEECCCCce
Confidence            76432   223456788999999999995 6677677 799999865443

>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*

Probab=100.00  E-value=2.6e-32  Score=247.79  Aligned_cols=249  Identities=25%  Similarity=0.354  Sum_probs=197.2

Q ss_pred             cccccccccce-eEEEEccCCCEEEEeeCCCcEEEEeecCCCceEEEEecCcccCeEEEEeeCCCCCCEEEEEeCCCeEE
Q 022111            4 QKIETGHEDTV-HDVAMDFYGKRLATASSDSSIKIIGLSNSASQHLATLKGHRGPVWQVAWAHPKFGSILASCSYDGQVI   82 (302)
Q Consensus         4 ~~~~~~h~~~v-~~~~~s~~~~~l~s~~~d~~v~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~s~D~~i~   82 (302)
                      ...+.+|...| .++.  +++++|++|+.|++|++||+..  .+.+..+.+|.+.|++++|+++  + +|++|+.|++|+
T Consensus       114 ~~~l~~h~~~v~~~~~--~~~~~l~sgs~dg~i~vwd~~~--~~~~~~~~~h~~~V~~l~~~~~--~-~l~s~s~dg~i~  186 (464)
T 3v7d_B          114 RTTLRGHMTSVITCLQ--FEDNYVITGADDKMIRVYDSIN--KKFLLQLSGHDGGVWALKYAHG--G-ILVSGSTDRTVR  186 (464)
T ss_dssp             EEEEECCSSSCEEEEE--EETTEEEEEETTSCEEEEETTT--TEEEEEECCCSSCEEEEEECST--T-EEEEEETTSCEE
T ss_pred             eEEEcCCCCCcEEEEE--ECCCEEEEEcCCCcEEEEECCC--CcEEEEEeCCCcCEEEEEEcCC--C-EEEEEeCCCCEE
Confidence            34567898875 5444  4678999999999999999865  4577888999999999999753  3 999999999999


Q ss_pred             EEEcCCCCceeEEEEecCCCCCeeEEEecCCCCCcEEEEEecCCcEEEEEecCCCCeee--------------------e
Q 022111           83 IWKEGNQNDWTQAHTFNDHKSSVNSIAWAPHELGLSLACGSSDGNISVFTATADGGWDT--------------------T  142 (302)
Q Consensus        83 iwd~~~~~~~~~~~~~~~h~~~i~~l~~~pd~~~~~l~sg~~d~~v~~~~~~~~~~~~~--------------------~  142 (302)
                      +||++++   .....+.+|...|.+++|+|..++.++++|+.|+.|++||+........                    .
T Consensus       187 vwd~~~~---~~~~~~~~h~~~v~~l~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  263 (464)
T 3v7d_B          187 VWDIKKG---CCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFV  263 (464)
T ss_dssp             EEETTTT---EEEEEECCCSSCEEEEEEEESSSCEEEEEEETTSCEEEEECCCCCCC------CCSSEEESCGGGCTTEE
T ss_pred             EEECCCC---cEEEEECCCCCccEEEEEecCCCCCEEEEEcCCCcEEEeeCCCCcccccccccCCcceEeeccCCCeEEE
Confidence            9999765   4677888999999999999654467999999999999999875432110                    1


Q ss_pred             eecccCCCCeEEEEeCCCCCCCceeecccCCCceeEEEeeCCCcEEEEEEecCccccccccccccCCCceeEEEeeCCCC
Q 022111          143 RIDQAHPVGVTSVSWAPAMAPGALVGLGLLDPVQKLASCGCDNTVKVWKMYNGIWKMDCFPALQMHSDWVRSVAWAPNLG  222 (302)
Q Consensus       143 ~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~D~~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~  222 (302)
                      ....+|...+.++..                ++..|++++.|+.|++||+.++    .++..+.+|...|.+++|+|++ 
T Consensus       264 ~~~~~~~~~v~~~~~----------------~~~~l~~~~~d~~i~vwd~~~~----~~~~~~~~~~~~v~~~~~~~~~-  322 (464)
T 3v7d_B          264 GVLRGHMASVRTVSG----------------HGNIVVSGSYDNTLIVWDVAQM----KCLYILSGHTDRIYSTIYDHER-  322 (464)
T ss_dssp             EEECCCSSCEEEEEE----------------ETTEEEEEETTSCEEEEETTTT----EEEEEECCCSSCEEEEEEETTT-
T ss_pred             EEccCccceEEEEcC----------------CCCEEEEEeCCCeEEEEECCCC----cEEEEecCCCCCEEEEEEcCCC-
Confidence            111245555555432                2478999999999999999865    4556778999999999999985 


Q ss_pred             CCccEEEEEecCCeEEEEEeccCCcceeeeeeccCCCcEEEEEEccCCCEEEEecCC-ceEEeeecCCce
Q 022111          223 LPKSTIASASQDGTVVIWTCAKEGEQWEGRVLKDFKTPVWSVSWSLTGNLLAVADAN-NVTLWKEAVDGE  291 (302)
Q Consensus       223 ~~~~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~la~~~~d-~i~~w~~~~~~~  291 (302)
                         ..|++|+.|+.|++||++...   ....+..|...|.+++|+  +++|++++.| .|++|+......
T Consensus       323 ---~~l~sg~~dg~i~vwd~~~~~---~~~~~~~h~~~v~~~~~~--~~~l~s~s~dg~v~vwd~~~~~~  384 (464)
T 3v7d_B          323 ---KRCISASMDTTIRIWDLENGE---LMYTLQGHTALVGLLRLS--DKFLVSAAADGSIRGWDANDYSR  384 (464)
T ss_dssp             ---TEEEEEETTSCEEEEETTTTE---EEEEECCCSSCEEEEEEC--SSEEEEEETTSEEEEEETTTCCE
T ss_pred             ---CEEEEEeCCCcEEEEECCCCc---EEEEEeCCCCcEEEEEEc--CCEEEEEeCCCcEEEEECCCCce
Confidence               789999999999999997642   123346788899999997  5789999888 799999865443

>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A

Probab=100.00  E-value=8.9e-33  Score=237.19  Aligned_cols=224  Identities=24%  Similarity=0.355  Sum_probs=176.3

Q ss_pred             ccccccccceeEEEEccC--CCEEEEeeCCCcEEEEeecCCCceEEEEecCcccCeEEEEeeCCCCCCEEEEEeCCCeEE
Q 022111            5 KIETGHEDTVHDVAMDFY--GKRLATASSDSSIKIIGLSNSASQHLATLKGHRGPVWQVAWAHPKFGSILASCSYDGQVI   82 (302)
Q Consensus         5 ~~~~~h~~~v~~~~~s~~--~~~l~s~~~d~~v~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~s~D~~i~   82 (302)
                      .++.+|+++|++++|+++  +++||||+.|++|+|||+..+....+..+.+|...|.+++|+|+..+.+|++++.|++|+
T Consensus        47 ~~l~gH~~~V~~v~~s~~~~g~~l~s~s~D~~v~iWd~~~~~~~~~~~~~~h~~~v~~v~~~p~~~g~~l~s~s~d~~v~  126 (297)
T 2pm7_B           47 DTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVMIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPMLLVASSDGKVS  126 (297)
T ss_dssp             EEECCCSSCEEEEEECCGGGCSEEEEEETTTEEEEEEBSSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEE
T ss_pred             EEEccccCCeEEEEecCCCcCCEEEEEcCCCEEEEEEcCCCceEEEEEeecCCCceeEEEeCcCCCCcEEEEEECCCcEE
Confidence            356799999999999863  899999999999999999764434556778899999999998643478999999999999


Q ss_pred             EEEcCCCCceeEEEEecCCCCCeeEEEecCCC-----------CCcEEEEEecCCcEEEEEecCCCC-eee-eeecccCC
Q 022111           83 IWKEGNQNDWTQAHTFNDHKSSVNSIAWAPHE-----------LGLSLACGSSDGNISVFTATADGG-WDT-TRIDQAHP  149 (302)
Q Consensus        83 iwd~~~~~~~~~~~~~~~h~~~i~~l~~~pd~-----------~~~~l~sg~~d~~v~~~~~~~~~~-~~~-~~~~~~h~  149 (302)
                      +||++..... ....+.+|...|.+++|+|+.           .+.+|++|+.|++|++||++.... +.. ..+ .+|.
T Consensus       127 ~wd~~~~~~~-~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~~~~~~~l~sgs~D~~v~lwd~~~~~~~~~~~~~l-~~H~  204 (297)
T 2pm7_B          127 VVEFKENGTT-SPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTL-EGHS  204 (297)
T ss_dssp             EEEBCSSSCB-CCEEEECCSSCEEEEEECCCC------------CCEEEEEETTSCEEEEEEETTTTEEEEEEEE-CCCS
T ss_pred             EEEecCCCce-eeeeeecccCccceEeecCCcccccccCCCCCCcceEEEEcCCCcEEEEEEcCCCceEEEEEEe-cCCC
Confidence            9999764322 234567899999999999973           145899999999999999975432 112 233 3799


Q ss_pred             CCeEEEEeCCCCCCCceeecccCCCceeEEEeeCCCcEEEEEEecCccccc-cccccccCCCceeEEEeeCCCCCCccEE
Q 022111          150 VGVTSVSWAPAMAPGALVGLGLLDPVQKLASCGCDNTVKVWKMYNGIWKMD-CFPALQMHSDWVRSVAWAPNLGLPKSTI  228 (302)
Q Consensus       150 ~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~D~~v~iwd~~~~~~~~~-~~~~~~~h~~~v~~v~~~p~~~~~~~~l  228 (302)
                      ..|.+++|+|+..           .+.+|+|++.|++|+|||+.+...... ......+|...|.+++|+|++    ++|
T Consensus       205 ~~V~~v~~sp~~~-----------~~~~las~s~D~~v~iWd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g----~~l  269 (297)
T 2pm7_B          205 DWVRDVAWSPTVL-----------LRSYMASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSG----NVL  269 (297)
T ss_dssp             SCEEEEEECCCCS-----------SSEEEEEEETTSCEEEEEESSTTSCCEEEESSSSCCSSCEEEEEECSSS----CCE
T ss_pred             CceEEEEECCCCC-----------CceEEEEEECCCcEEEEEeCCCCCccceeeeecccCCCcEEEEEECCCC----CEE
Confidence            9999999999631           137899999999999999976421100 111125688999999999995    779


Q ss_pred             EEEecCCeEEEEEeccC
Q 022111          229 ASASQDGTVVIWTCAKE  245 (302)
Q Consensus       229 ~s~s~D~~i~iwd~~~~  245 (302)
                      |+++.|++|+||+....
T Consensus       270 as~~~D~~v~lw~~~~~  286 (297)
T 2pm7_B          270 ALSGGDNKVTLWKENLE  286 (297)
T ss_dssp             EEEETTSCEEEEEECTT
T ss_pred             EEEcCCCcEEEEEECCC
Confidence            99999999999998643

>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.5e-32  Score=245.08  Aligned_cols=246  Identities=17%  Similarity=0.287  Sum_probs=197.9

Q ss_pred             ccccceeEEEEccCCCEEEEeeCCCcEEEEeecCCCceEEEEecCcccCeEEEEeeCCCCCCEEEEEeCCCeEEEEEcCC
Q 022111            9 GHEDTVHDVAMDFYGKRLATASSDSSIKIIGLSNSASQHLATLKGHRGPVWQVAWAHPKFGSILASCSYDGQVIIWKEGN   88 (302)
Q Consensus         9 ~h~~~v~~~~~s~~~~~l~s~~~d~~v~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~s~D~~i~iwd~~~   88 (302)
                      +|.+.|++++|+|++++|++++.|+.|++|+..   ...+..+.+|...|.+++|+++  +++|++++.|+.|++||+++
T Consensus       106 ~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~~~~---~~~~~~~~~~~~~v~~~~~~~~--~~~l~~~~~d~~i~iwd~~~  180 (425)
T 1r5m_A          106 KTTNQVTCLAWSHDGNSIVTGVENGELRLWNKT---GALLNVLNFHRAPIVSVKWNKD--GTHIISMDVENVTILWNVIS  180 (425)
T ss_dssp             --CBCEEEEEECTTSSEEEEEETTSCEEEEETT---SCEEEEECCCCSCEEEEEECTT--SSEEEEEETTCCEEEEETTT
T ss_pred             CCCCceEEEEEcCCCCEEEEEeCCCeEEEEeCC---CCeeeeccCCCccEEEEEECCC--CCEEEEEecCCeEEEEECCC
Confidence            378899999999999999999999999999942   3466788899999999999864  78999999999999999865


Q ss_pred             CCce-----------------------------------------------------eEEEEecCCCCCeeEEEecCCCC
Q 022111           89 QNDW-----------------------------------------------------TQAHTFNDHKSSVNSIAWAPHEL  115 (302)
Q Consensus        89 ~~~~-----------------------------------------------------~~~~~~~~h~~~i~~l~~~pd~~  115 (302)
                      ....                                                     .....+..|...|.+++|+|+  
T Consensus       181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~--  258 (425)
T 1r5m_A          181 GTVMQHFELKETGGSSINAENHSGDGSLGVDVEWVDDDKFVIPGPKGAIFVYQITEKTPTGKLIGHHGPISVLEFNDT--  258 (425)
T ss_dssp             TEEEEEECCC---------------CCCBSCCEEEETTEEEEECGGGCEEEEETTCSSCSEEECCCSSCEEEEEEETT--
T ss_pred             CcEEEEeeccccCccceeeccccCCcceeeEEEEcCCCEEEEEcCCCeEEEEEcCCCceeeeeccCCCceEEEEECCC--
Confidence            3210                                                     112245578899999999998  


Q ss_pred             CcEEEEEecCCcEEEEEecCCCCeeeeeecccCCCCeEEEEeCCCCCCCceeecccCCCceeEEEeeCCCcEEEEEEecC
Q 022111          116 GLSLACGSSDGNISVFTATADGGWDTTRIDQAHPVGVTSVSWAPAMAPGALVGLGLLDPVQKLASCGCDNTVKVWKMYNG  195 (302)
Q Consensus       116 ~~~l~sg~~d~~v~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~D~~v~iwd~~~~  195 (302)
                      +.+|++++.|+.|++||+......  ..+ ..|...+.++.|+|+              + .|++++.|+.|++||++++
T Consensus       259 ~~~l~~~~~d~~i~i~d~~~~~~~--~~~-~~~~~~i~~~~~~~~--------------~-~l~~~~~d~~i~i~d~~~~  320 (425)
T 1r5m_A          259 NKLLLSASDDGTLRIWHGGNGNSQ--NCF-YGHSQSIVSASWVGD--------------D-KVISCSMDGSVRLWSLKQN  320 (425)
T ss_dssp             TTEEEEEETTSCEEEECSSSBSCS--EEE-CCCSSCEEEEEEETT--------------T-EEEEEETTSEEEEEETTTT
T ss_pred             CCEEEEEcCCCEEEEEECCCCccc--eEe-cCCCccEEEEEECCC--------------C-EEEEEeCCCcEEEEECCCC
Confidence            569999999999999998754322  233 368889999999985              3 8999999999999999875


Q ss_pred             ccccccccccccCCCceeEEEeeCCCCCCccEEEEEecCCeEEEEEeccCCcc-----------------eeeeeeccCC
Q 022111          196 IWKMDCFPALQMHSDWVRSVAWAPNLGLPKSTIASASQDGTVVIWTCAKEGEQ-----------------WEGRVLKDFK  258 (302)
Q Consensus       196 ~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~l~s~s~D~~i~iwd~~~~~~~-----------------~~~~~~~~~~  258 (302)
                          ..+..+..|...|.+++|+|++    ..|++++.|+.|++||++.....                 ........+.
T Consensus       321 ----~~~~~~~~~~~~i~~~~~s~~~----~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  392 (425)
T 1r5m_A          321 ----TLLALSIVDGVPIFAGRISQDG----QKYAVAFMDGQVNVYDLKKLNSKSRSLYGNRDGILNPLPIPLYASYQSSQ  392 (425)
T ss_dssp             ----EEEEEEECTTCCEEEEEECTTS----SEEEEEETTSCEEEEECHHHHC--------------CEECCEEEEECCTT
T ss_pred             ----cEeEecccCCccEEEEEEcCCC----CEEEEEECCCeEEEEECCCCccceeeeecccccccCcccchhhhhhcCcc
Confidence                3455677899999999999985    78999999999999999753200                 0112234554


Q ss_pred             C--cEEEEEEccCCCEEEEecCC-ceEEeeec
Q 022111          259 T--PVWSVSWSLTGNLLAVADAN-NVTLWKEA  287 (302)
Q Consensus       259 ~--~v~~~~~spdg~~la~~~~d-~i~~w~~~  287 (302)
                      .  .|.+++|+|+|++|++++.| .|++|++.
T Consensus       393 ~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~  424 (425)
T 1r5m_A          393 DNDYIFDLSWNCAGNKISVAYSLQEGSVVAIP  424 (425)
T ss_dssp             CCCCEEEEEECTTSSEEEEEESSSCCEEEECC
T ss_pred             cCCceEEEEccCCCceEEEEecCceEEEEeec
Confidence            4  89999999999999999888 69999964

>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}

Probab=100.00  E-value=9.2e-34  Score=253.02  Aligned_cols=258  Identities=19%  Similarity=0.345  Sum_probs=201.1

Q ss_pred             ccccceeEEEEccCCC-EEEEe----------eCCCcEEEEeecCCCce-EEEEecCcccCeEEEEeeCCCCCCEEEEEe
Q 022111            9 GHEDTVHDVAMDFYGK-RLATA----------SSDSSIKIIGLSNSASQ-HLATLKGHRGPVWQVAWAHPKFGSILASCS   76 (302)
Q Consensus         9 ~h~~~v~~~~~s~~~~-~l~s~----------~~d~~v~lw~~~~~~~~-~~~~~~~h~~~v~~v~~~~~~~~~~l~s~s   76 (302)
                      .+...|.+++|+|+++ +|++|          +.|++|++|++...... .+.. ..|...|.+++|+++  +++|++++
T Consensus        10 ~~~~~v~~~~~sp~g~~~l~~g~~~g~~~~~~~~d~~v~iw~~~~~~~~~~~~~-~~~~~~v~~~~~s~~--~~~l~~~~   86 (416)
T 2pm9_A           10 AEFSRTATFAWSHDKIPLLVSGTVSGTVDANFSTDSSLELWSLLAADSEKPIAS-LQVDSKFNDLDWSHN--NKIIAGAL   86 (416)
T ss_dssp             CEEEESCBCCBCSSSSCEEEEBCBSSCCCSSCCCCCCCEEEESSSGGGCSCSCC-CCCSSCEEEEEECSS--SSCEEEEE
T ss_pred             hhhhhcceEeeCCCCCCEEEEEecCcccccccCCCCeEEEEEccCCCCCcEEEE-EecCCceEEEEECCC--CCeEEEEc
Confidence            3456788999999987 99999          89999999998654321 2333 368899999999864  78999999


Q ss_pred             CCCeEEEEEcCCCCc-eeEEEEecCCCCCeeEEEecCCCCCcEEEEEecCCcEEEEEecCCC------CeeeeeecccCC
Q 022111           77 YDGQVIIWKEGNQND-WTQAHTFNDHKSSVNSIAWAPHELGLSLACGSSDGNISVFTATADG------GWDTTRIDQAHP  149 (302)
Q Consensus        77 ~D~~i~iwd~~~~~~-~~~~~~~~~h~~~i~~l~~~pd~~~~~l~sg~~d~~v~~~~~~~~~------~~~~~~~~~~h~  149 (302)
                      .|+.|++||+..... ......+.+|...|.+++|+|+. +.+|++++.|+.|++||+....      ..........|.
T Consensus        87 ~dg~v~vw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~-~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~  165 (416)
T 2pm9_A           87 DNGSLELYSTNEANNAINSMARFSNHSSSVKTVKFNAKQ-DNVLASGGNNGEIFIWDMNKCTESPSNYTPLTPGQSMSSV  165 (416)
T ss_dssp             SSSCEEEECCSSTTSCCCEEEECCCSSSCCCEEEECSSS-TTBEEEECSSSCEEBCBTTTTSSCTTTCCCBCCCCSCCSS
T ss_pred             cCCeEEEeecccccccccchhhccCCccceEEEEEcCCC-CCEEEEEcCCCeEEEEECCCCccccccccccccccccCCC
Confidence            999999999876211 13667888999999999999973 4589999999999999987543      111111123688


Q ss_pred             CCeEEEEeCCCCCCCceeecccCCCceeEEEeeCCCcEEEEEEecCcccccccccccc------CCCceeEEEeeCCCCC
Q 022111          150 VGVTSVSWAPAMAPGALVGLGLLDPVQKLASCGCDNTVKVWKMYNGIWKMDCFPALQM------HSDWVRSVAWAPNLGL  223 (302)
Q Consensus       150 ~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~D~~v~iwd~~~~~~~~~~~~~~~~------h~~~v~~v~~~p~~~~  223 (302)
                      ..+.+++|+|+.             +.+|++++.|+.|++||++++.    ....+..      |...|.+++|+|++  
T Consensus       166 ~~v~~~~~~~~~-------------~~~l~~~~~dg~v~iwd~~~~~----~~~~~~~~~~~~~~~~~v~~~~~~~~~--  226 (416)
T 2pm9_A          166 DEVISLAWNQSL-------------AHVFASAGSSNFASIWDLKAKK----EVIHLSYTSPNSGIKQQLSVVEWHPKN--  226 (416)
T ss_dssp             CCCCEEEECSSC-------------TTEEEEESSSSCEEEEETTTTE----EEEEECCCCCSSCCCCCEEEEEECSSC--
T ss_pred             CCeeEEEeCCCC-------------CcEEEEEcCCCCEEEEECCCCC----cceEEeccccccccCCceEEEEECCCC--
Confidence            889999999863             3689999999999999998763    2233333      48899999999985  


Q ss_pred             CccEEEEEecCC---eEEEEEeccCCcceeeeeec-cCCCcEEEEEEcc-CCCEEEEecCC-ceEEeeecCCceE
Q 022111          224 PKSTIASASQDG---TVVIWTCAKEGEQWEGRVLK-DFKTPVWSVSWSL-TGNLLAVADAN-NVTLWKEAVDGEW  292 (302)
Q Consensus       224 ~~~~l~s~s~D~---~i~iwd~~~~~~~~~~~~~~-~~~~~v~~~~~sp-dg~~la~~~~d-~i~~w~~~~~~~~  292 (302)
                       ...|++++.|+   .|++||++.....  ..... .+...|.+++|+| ++++|++++.| .|++|+.......
T Consensus       227 -~~~l~~~~~d~~~~~i~~~d~~~~~~~--~~~~~~~~~~~v~~~~~s~~~~~~l~s~~~dg~v~~wd~~~~~~~  298 (416)
T 2pm9_A          227 -STRVATATGSDNDPSILIWDLRNANTP--LQTLNQGHQKGILSLDWCHQDEHLLLSSGRDNTVLLWNPESAEQL  298 (416)
T ss_dssp             -TTEEEEEECCSSSCCCCEEETTSTTSC--SBCCCSCCSSCEEEEEECSSCSSCEEEEESSSEEEEECSSSCCEE
T ss_pred             -CCEEEEEECCCCCceEEEEeCCCCCCC--cEEeecCccCceeEEEeCCCCCCeEEEEeCCCCEEEeeCCCCccc
Confidence             36899999999   9999999864221  12334 6788999999999 99999999988 7999998654443

>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X

Probab=100.00  E-value=4.8e-33  Score=247.03  Aligned_cols=251  Identities=18%  Similarity=0.282  Sum_probs=199.2

Q ss_pred             ccccccccceeEEEEccC----C---CEEEEeeCCCcEEEEeecCCCc---eEEEEecCc-----ccCeEEEEee----C
Q 022111            5 KIETGHEDTVHDVAMDFY----G---KRLATASSDSSIKIIGLSNSAS---QHLATLKGH-----RGPVWQVAWA----H   65 (302)
Q Consensus         5 ~~~~~h~~~v~~~~~s~~----~---~~l~s~~~d~~v~lw~~~~~~~---~~~~~~~~h-----~~~v~~v~~~----~   65 (302)
                      ..+.+|...|++++|+++    +   ++|++++.|++|++|++.....   ..+..+.+|     ...|.+++|+    +
T Consensus        56 ~~~~~h~~~v~~~~~~~~~~~~g~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~  135 (397)
T 1sq9_A           56 YSHFVHKSGLHHVDVLQAIERDAFELCLVATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDR  135 (397)
T ss_dssp             EEEECCTTCEEEEEEEEEEETTTEEEEEEEEEETTSCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC--
T ss_pred             eEEecCCCcEEEEEEecccccCCccccEEEEEcCCCCEEEEEccCCcccccccceeecccccccCCCcEEEEEEeeccCC
Confidence            345689999999999999    9   9999999999999999865431   115667788     5899999998    5


Q ss_pred             CCCCCE-EEEEeCCCeEEEEEcCC------CCce--eEEEEe-------cCCCCCeeEEEecCCCCCcEEEEEecCCcEE
Q 022111           66 PKFGSI-LASCSYDGQVIIWKEGN------QNDW--TQAHTF-------NDHKSSVNSIAWAPHELGLSLACGSSDGNIS  129 (302)
Q Consensus        66 ~~~~~~-l~s~s~D~~i~iwd~~~------~~~~--~~~~~~-------~~h~~~i~~l~~~pd~~~~~l~sg~~d~~v~  129 (302)
                      +  +++ |++++.|+.|++||++.      ....  .+...+       ..|...|.+++|+|+  + .+++++.|+.|+
T Consensus       136 ~--~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~--~-~l~~~~~dg~i~  210 (397)
T 1sq9_A          136 L--LSHRLVATDVKGTTYIWKFHPFADESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISER--G-LIATGFNNGTVQ  210 (397)
T ss_dssp             ----CEEEEEEETTSCEEEEEEESSSSHHHHTTTCCCCEEEEEEEECCSSSSCCCCCEEEECTT--S-EEEEECTTSEEE
T ss_pred             C--CceEEEEEeCCCcEEEEeCCccccccccceeeccCcceeeeeeccccCCCCCceEEEECCC--c-eEEEEeCCCcEE
Confidence            3  788 99999999999999976      3221  111144       458899999999998  6 899999999999


Q ss_pred             EEEecCCCCeeeeeeccc---C---CCCeEEEEeCCCCCCCceeecccCCCceeEEEeeCC---CcEEEEEEecCccccc
Q 022111          130 VFTATADGGWDTTRIDQA---H---PVGVTSVSWAPAMAPGALVGLGLLDPVQKLASCGCD---NTVKVWKMYNGIWKMD  200 (302)
Q Consensus       130 ~~~~~~~~~~~~~~~~~~---h---~~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~D---~~v~iwd~~~~~~~~~  200 (302)
                      +||++...  ....+. .   |   ...+.+++|+|++              .+|++++.|   +.|++||++++    .
T Consensus       211 i~d~~~~~--~~~~~~-~~~~h~~~~~~i~~i~~~~~~--------------~~l~~~~~d~~~g~i~i~d~~~~----~  269 (397)
T 1sq9_A          211 ISELSTLR--PLYNFE-SQHSMINNSNSIRSVKFSPQG--------------SLLAIAHDSNSFGCITLYETEFG----E  269 (397)
T ss_dssp             EEETTTTE--EEEEEE-CCC---CCCCCEEEEEECSST--------------TEEEEEEEETTEEEEEEEETTTC----C
T ss_pred             EEECCCCc--eeEEEe-ccccccccCCccceEEECCCC--------------CEEEEEecCCCCceEEEEECCCC----c
Confidence            99987542  223332 4   7   8889999999863              789999999   99999999875    3


Q ss_pred             ccccccc-------------CCCceeEEEeeCCCCCCccEEEEEecCCeEEEEEeccCCcceeeeeec------cC----
Q 022111          201 CFPALQM-------------HSDWVRSVAWAPNLGLPKSTIASASQDGTVVIWTCAKEGEQWEGRVLK------DF----  257 (302)
Q Consensus       201 ~~~~~~~-------------h~~~v~~v~~~p~~~~~~~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~------~~----  257 (302)
                      .+..+.+             |...|.+++|+|++    .+|++++.|+.|++||++.....   ....      .+    
T Consensus       270 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~----~~l~~~~~dg~i~iwd~~~~~~~---~~~~~~~~~~~~~~~~  342 (397)
T 1sq9_A          270 RIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSG----ETLCSAGWDGKLRFWDVKTKERI---TTLNMHCDDIEIEEDI  342 (397)
T ss_dssp             EEEEECBC--------CCBSBSSCEEEEEECSSS----SEEEEEETTSEEEEEETTTTEEE---EEEECCGGGCSSGGGC
T ss_pred             ccceeccCcccccccccccccCCcEEEEEECCCC----CEEEEEeCCCeEEEEEcCCCcee---EEEecccCcccchhhh
Confidence            3455666             99999999999985    78999999999999999764221   2223      45    


Q ss_pred             -----------CCcEEEEEEccCC----------CEEEEecCC-ceEEeeecC
Q 022111          258 -----------KTPVWSVSWSLTG----------NLLAVADAN-NVTLWKEAV  288 (302)
Q Consensus       258 -----------~~~v~~~~~spdg----------~~la~~~~d-~i~~w~~~~  288 (302)
                                 ..+|.+++|+|+|          ++|++++.| .|++|+...
T Consensus       343 ~~g~~~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~l~s~~~dg~i~iw~~~~  395 (397)
T 1sq9_A          343 LAVDEHGDSLAEPGVFDVKFLKKGWRSGMGADLNESLCCVCLDRSIRWFREAG  395 (397)
T ss_dssp             CCBCTTSCBCSSCCEEEEEEECTTTSBSTTCTTSCEEEEEETTTEEEEEEEEC
T ss_pred             hccccccccccCCceeEEEeccccccccccccccceEEEecCCCcEEEEEcCC
Confidence                       7889999999998          799999888 799999753

>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}

Probab=100.00  E-value=7.8e-34  Score=255.88  Aligned_cols=259  Identities=14%  Similarity=0.116  Sum_probs=191.7

Q ss_pred             cccccceeEEEEcc-CCCEEEEeeCCCcEEEEeecC---CC-ceEEEEecCcccCeEEEEeeCCCCCCEEEEEeCCCeEE
Q 022111            8 TGHEDTVHDVAMDF-YGKRLATASSDSSIKIIGLSN---SA-SQHLATLKGHRGPVWQVAWAHPKFGSILASCSYDGQVI   82 (302)
Q Consensus         8 ~~h~~~v~~~~~s~-~~~~l~s~~~d~~v~lw~~~~---~~-~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~s~D~~i~   82 (302)
                      .+|.+.|++++|+| ++++||+|+.|++|+|||+..   .. ......+ +|.+.|.+++|+++  +++|++|+.|++|+
T Consensus        60 ~~h~~~V~~~~~s~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~-~h~~~v~~~~~~~~--~~~l~s~s~dg~i~  136 (437)
T 3gre_A           60 ENEPNSITSSAVSPGETPYLITGSDQGVIKIWNLKEIIVGEVYSSSLTY-DCSSTVTQITMIPN--FDAFAVSSKDGQII  136 (437)
T ss_dssp             TTTTSCEEEEEEECSSSCEEEEEETTSEEEEEEHHHHHTTCCCSCSEEE-ECSSCEEEEEECTT--SSEEEEEETTSEEE
T ss_pred             cCCCCceEEEEECCCCCCEEEEecCCceEEEeECcccccCcccceeeec-cCCCCEEEEEEeCC--CCEEEEEeCCCEEE
Confidence            78999999999999 999999999999999999854   22 1122333 59999999999863  78999999999999


Q ss_pred             EEEcC---CCCce-----eEEEEe--cC--CCCCeeEEEecCCCCCcEEEEEecCCcEEEEEecCCCCeeeeeecc-cCC
Q 022111           83 IWKEG---NQNDW-----TQAHTF--ND--HKSSVNSIAWAPHELGLSLACGSSDGNISVFTATADGGWDTTRIDQ-AHP  149 (302)
Q Consensus        83 iwd~~---~~~~~-----~~~~~~--~~--h~~~i~~l~~~pd~~~~~l~sg~~d~~v~~~~~~~~~~~~~~~~~~-~h~  149 (302)
                      +||++   .+...     ..+..+  ..  +...+.++.+.....+.+|++|+.|+.|++||++.....  ..+.. .|.
T Consensus       137 vwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~--~~~~~~~h~  214 (437)
T 3gre_A          137 VLKVNHYQQESEVKFLNCECIRKINLKNFGKNEYAVRMRAFVNEEKSLLVALTNLSRVIIFDIRTLERL--QIIENSPRH  214 (437)
T ss_dssp             EEEEEEEEETTEEEEEEEEEEEEEEGGGGSSCCCEEEEEEEECSSCEEEEEEETTSEEEEEETTTCCEE--EEEECCGGG
T ss_pred             EEEeccccCCceeeccccceeEEEEccCcccccCceEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCeee--EEEccCCCC
Confidence            99984   22110     111111  12  556777777432223679999999999999999764332  23321 277


Q ss_pred             CCeEEEEeCCCCCCCceeecccCCCceeEEEeeCCCcEEEEEEecCccccccccccc-cCCCceeEEEeeCCCCCCccEE
Q 022111          150 VGVTSVSWAPAMAPGALVGLGLLDPVQKLASCGCDNTVKVWKMYNGIWKMDCFPALQ-MHSDWVRSVAWAPNLGLPKSTI  228 (302)
Q Consensus       150 ~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~D~~v~iwd~~~~~~~~~~~~~~~-~h~~~v~~v~~~p~~~~~~~~l  228 (302)
                      ..|++++|+|++              .+|++|+.|+.|++||++++    .++..+. +|...|.+++|+|....++..|
T Consensus       215 ~~v~~~~~s~~~--------------~~l~s~~~dg~i~iwd~~~~----~~~~~~~~~~~~~v~~~~~~~~~s~~~~~l  276 (437)
T 3gre_A          215 GAVSSICIDEEC--------------CVLILGTTRGIIDIWDIRFN----VLIRSWSFGDHAPITHVEVCQFYGKNSVIV  276 (437)
T ss_dssp             CCEEEEEECTTS--------------CEEEEEETTSCEEEEETTTT----EEEEEEBCTTCEEEEEEEECTTTCTTEEEE
T ss_pred             CceEEEEECCCC--------------CEEEEEcCCCeEEEEEcCCc----cEEEEEecCCCCceEEEEeccccCCCccEE
Confidence            899999999863              78999999999999999875    3444444 6888999998887644446799


Q ss_pred             EEEecCCeEEEEEeccCCcceeee---------------------eecc--CCCcEEEEEEccCCCEEEEecCC-ceEEe
Q 022111          229 ASASQDGTVVIWTCAKEGEQWEGR---------------------VLKD--FKTPVWSVSWSLTGNLLAVADAN-NVTLW  284 (302)
Q Consensus       229 ~s~s~D~~i~iwd~~~~~~~~~~~---------------------~~~~--~~~~v~~~~~spdg~~la~~~~d-~i~~w  284 (302)
                      ++|+.|+.|++||++.........                     ...+  +...|++++|+ ++++|++++.| .|++|
T Consensus       277 ~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~~-~~~~l~s~~~d~~i~~w  355 (437)
T 3gre_A          277 VGGSSKTFLTIWNFVKGHCQYAFINSDEQPSMEHFLPIEKGLEELNFCGIRSLNALSTISVS-NDKILLTDEATSSIVMF  355 (437)
T ss_dssp             EEESTTEEEEEEETTTTEEEEEEESSSSCCCGGGGSCBCSSGGGCCCCCCCSGGGGCCEEEE-TTEEEEEEGGGTEEEEE
T ss_pred             EEEcCCCcEEEEEcCCCcEEEEEEcCCCCCccceecccccccccceecccccCCceEEEEEC-CceEEEecCCCCeEEEE
Confidence            999999999999997532110000                     0011  55679999999 78999999988 79999


Q ss_pred             eecCCc
Q 022111          285 KEAVDG  290 (302)
Q Consensus       285 ~~~~~~  290 (302)
                      +.....
T Consensus       356 d~~~~~  361 (437)
T 3gre_A          356 SLNELS  361 (437)
T ss_dssp             ETTCGG
T ss_pred             ECCCcc
Confidence            986543

>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A

Probab=100.00  E-value=4.2e-33  Score=244.04  Aligned_cols=258  Identities=17%  Similarity=0.317  Sum_probs=195.5

Q ss_pred             cccccccceeEEEEccC----CCEEEEeeCCCcEEEEeecCCCc-eEEEEe--cCcccCeEEEEeeCCCC--CCEEEEEe
Q 022111            6 IETGHEDTVHDVAMDFY----GKRLATASSDSSIKIIGLSNSAS-QHLATL--KGHRGPVWQVAWAHPKF--GSILASCS   76 (302)
Q Consensus         6 ~~~~h~~~v~~~~~s~~----~~~l~s~~~d~~v~lw~~~~~~~-~~~~~~--~~h~~~v~~v~~~~~~~--~~~l~s~s   76 (302)
                      +..+|...|++++|+|+    ...+++++.++.|++|++..... ..+...  ..|...|++++|+++..  +++|++|+
T Consensus        13 ~~~~h~~~v~~i~~~p~~~~~~~~~~~~~~~~~v~vw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~   92 (366)
T 3k26_A           13 LKEDHNQPLFGVQFNWHSKEGDPLVFATVGSNRVTLYECHSQGEIRLLQSYVDADADENFYTCAWTYDSNTSHPLLAVAG   92 (366)
T ss_dssp             EECTTCSCEEEEEECTTCCTTSCEEEEEEETTEEEEEEECGGGCEEEEEEEECSCTTCCEEEEEEEECTTTCCEEEEEEE
T ss_pred             eecCCCCceEEEEEecccCCCCceEEEECCCCEEEEEEcCCCcEEEeeeeccccCCCCcEEEEEeccCCCCCCCEEEEec
Confidence            34589999999999984    45666667777999999864321 222222  13668899999987532  56999999


Q ss_pred             CCCeEEEEEcCCCCceeEEEEecCCCCCeeEEEecCCCCCcEEEEEecCCcEEEEEecCCCCeeeeee--cccCCCCeEE
Q 022111           77 YDGQVIIWKEGNQNDWTQAHTFNDHKSSVNSIAWAPHELGLSLACGSSDGNISVFTATADGGWDTTRI--DQAHPVGVTS  154 (302)
Q Consensus        77 ~D~~i~iwd~~~~~~~~~~~~~~~h~~~i~~l~~~pd~~~~~l~sg~~d~~v~~~~~~~~~~~~~~~~--~~~h~~~v~~  154 (302)
                      .|+.|++||+.+.   .....+.+|...|.+++|+|+. +.+|++|+.|+.|++||+.....  ...+  ...|...|.+
T Consensus        93 ~dg~i~v~d~~~~---~~~~~~~~~~~~i~~~~~~~~~-~~~l~s~~~dg~i~iwd~~~~~~--~~~~~~~~~~~~~v~~  166 (366)
T 3k26_A           93 SRGIIRIINPITM---QCIKHYVGHGNAINELKFHPRD-PNLLLSVSKDHALRLWNIQTDTL--VAIFGGVEGHRDEVLS  166 (366)
T ss_dssp             TTCEEEEECTTTC---CEEEEEESCCSCEEEEEECSSC-TTEEEEEETTSCEEEEETTTTEE--EEEECSTTSCSSCEEE
T ss_pred             CCCEEEEEEchhc---eEeeeecCCCCcEEEEEECCCC-CCEEEEEeCCCeEEEEEeecCeE--EEEecccccccCceeE
Confidence            9999999998765   3567788899999999999932 56899999999999999875422  2222  1368899999


Q ss_pred             EEeCCCCCCCceeecccCCCceeEEEeeCCCcEEEEEEecCccccc------------------------cccccccCCC
Q 022111          155 VSWAPAMAPGALVGLGLLDPVQKLASCGCDNTVKVWKMYNGIWKMD------------------------CFPALQMHSD  210 (302)
Q Consensus       155 ~~~~~~~~~~~~~~~~~~~~~~~l~s~~~D~~v~iwd~~~~~~~~~------------------------~~~~~~~h~~  210 (302)
                      ++|+|++              .+|++++.|+.|++||++++.....                        ......+|..
T Consensus       167 ~~~~~~~--------------~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  232 (366)
T 3k26_A          167 ADYDLLG--------------EKIMSCGMDHSLKLWRINSKRMMNAIKESYDYNPNKTNRPFISQKIHFPDFSTRDIHRN  232 (366)
T ss_dssp             EEECTTS--------------SEEEEEETTSCEEEEESCSHHHHHHHHHHHTCCGGGCSSCCCCEEECCCSEEECSSCSS
T ss_pred             EEECCCC--------------CEEEEecCCCCEEEEECCCCccccccceeEEecCCCCcccccceeeccCccccccCCcc
Confidence            9999863              7899999999999999976421100                        0112234999


Q ss_pred             ceeEEEeeCCCCCCccEEEEEecCCeEEEEEeccCCcc-----------eeeeeeccCCCcEEEEEEccC--CCEEEEec
Q 022111          211 WVRSVAWAPNLGLPKSTIASASQDGTVVIWTCAKEGEQ-----------WEGRVLKDFKTPVWSVSWSLT--GNLLAVAD  277 (302)
Q Consensus       211 ~v~~v~~~p~~~~~~~~l~s~s~D~~i~iwd~~~~~~~-----------~~~~~~~~~~~~v~~~~~spd--g~~la~~~  277 (302)
                      .|.+++|++      +.|++++.|+.|++||++.....           ........+...|++++|+|+  |++|++++
T Consensus       233 ~v~~~~~~~------~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~  306 (366)
T 3k26_A          233 YVDCVRWLG------DLILSKSCENAIVCWKPGKMEDDIDKIKPSESNVTILGRFDYSQCDIWYMRFSMDFWQKMLALGN  306 (366)
T ss_dssp             CCCEEEEET------TEEEEECSSSEEEEEEESSTTCCGGGCCTTCCCEEEEEEEECSSCCSSCCCCEECTTSSEEEEEC
T ss_pred             eEEEEEEcC------CEEEEEecCCEEEEEeCCCccccccccccCCcchheeccccccCCcEEEEEEcCCCCCcEEEEEe
Confidence            999999983      57999999999999998764220           011223456678999999999  99999999


Q ss_pred             CC-ceEEeeecCC
Q 022111          278 AN-NVTLWKEAVD  289 (302)
Q Consensus       278 ~d-~i~~w~~~~~  289 (302)
                      .| .|++|+....
T Consensus       307 ~dg~i~vwd~~~~  319 (366)
T 3k26_A          307 QVGKLYVWDLEVE  319 (366)
T ss_dssp             TTSCEEEEECCSS
T ss_pred             cCCcEEEEECCCC
Confidence            88 7999998653

>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*

Probab=100.00  E-value=1.3e-32  Score=277.42  Aligned_cols=251  Identities=21%  Similarity=0.357  Sum_probs=208.3

Q ss_pred             cccccccceeEEEEccCCCEEEEeeCCCcEEEEeecCCCceEEEEecCcccCeEEEEeeCCCCCCEEEEEeCCCeEEEEE
Q 022111            6 IETGHEDTVHDVAMDFYGKRLATASSDSSIKIIGLSNSASQHLATLKGHRGPVWQVAWAHPKFGSILASCSYDGQVIIWK   85 (302)
Q Consensus         6 ~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~s~D~~i~iwd   85 (302)
                      ++.+|.+.|++++|+|++++||+|+.|++|++||+.+  .+.+..+.+|.+.|.+++|+++  +++|++++.|++|++||
T Consensus       610 ~~~~h~~~v~~~~~s~~~~~l~s~~~d~~i~vw~~~~--~~~~~~~~~h~~~v~~~~~s~~--~~~l~s~~~d~~v~vwd  685 (1249)
T 3sfz_A          610 VVRPHTDAVYHACFSQDGQRIASCGADKTLQVFKAET--GEKLLDIKAHEDEVLCCAFSSD--DSYIATCSADKKVKIWD  685 (1249)
T ss_dssp             EECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTT--CCEEEEECCCSSCEEEEEECTT--SSEEEEEETTSEEEEEE
T ss_pred             EEecccccEEEEEECCCCCEEEEEeCCCeEEEEECCC--CCEEEEeccCCCCEEEEEEecC--CCEEEEEeCCCeEEEEE
Confidence            4568999999999999999999999999999999865  3467788999999999999864  89999999999999999


Q ss_pred             cCCCCceeEEEEecCCCCCeeEEEecCCCCCcEEEEEecCCcEEEEEecCCCCeeeeeecccCCCCeEEEEeCCCCCCCc
Q 022111           86 EGNQNDWTQAHTFNDHKSSVNSIAWAPHELGLSLACGSSDGNISVFTATADGGWDTTRIDQAHPVGVTSVSWAPAMAPGA  165 (302)
Q Consensus        86 ~~~~~~~~~~~~~~~h~~~i~~l~~~pd~~~~~l~sg~~d~~v~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~  165 (302)
                      +.++   ..+..+.+|...|.+++|+|+..+..+++|+.|+.|++||+.+...  ...+ .+|...|.+++|+|++    
T Consensus       686 ~~~~---~~~~~~~~~~~~v~~~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~--~~~~-~~h~~~v~~~~~sp~~----  755 (1249)
T 3sfz_A          686 SATG---KLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKEC--RNTM-FGHTNSVNHCRFSPDD----  755 (1249)
T ss_dssp             TTTC---CEEEEEECCSSCEEEEEECSSSSCCEEEEEETTSCEEEEETTSSSE--EEEE-CCCSSCEEEEEECSST----
T ss_pred             CCCC---ceEEEEcCCCCcEEEEEEecCCCceEEEEEeCCCeEEEEECCCcch--hhee-cCCCCCEEEEEEecCC----
Confidence            9876   3677888999999999999975567899999999999999875432  2333 3789999999999864    


Q ss_pred             eeecccCCCceeEEEeeCCCcEEEEEEecCccccc---------------------------------------------
Q 022111          166 LVGLGLLDPVQKLASCGCDNTVKVWKMYNGIWKMD---------------------------------------------  200 (302)
Q Consensus       166 ~~~~~~~~~~~~l~s~~~D~~v~iwd~~~~~~~~~---------------------------------------------  200 (302)
                                ..|++++.|++|++||+.++.....                                             
T Consensus       756 ----------~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~~~v~~~d  825 (1249)
T 3sfz_A          756 ----------ELLASCSADGTLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAAKNKVLLFD  825 (1249)
T ss_dssp             ----------TEEEEEESSSEEEEEEGGGTEEEEEEECCCCC--------CCCCCBCCCCBCTTSSEEEEEETTEEEEEE
T ss_pred             ----------CEEEEEECCCeEEEEeCCCCcccceecccccccccCCccccccceEEEEEECCCCCEEEEEcCCcEEEEE
Confidence                      6899999999999999765421000                                             


Q ss_pred             -----cccc-cccCCCceeEEEeeCCCCCCccEEEEEecCCeEEEEEeccCCcceeeeeeccCCCcEEEEEEccCCCEEE
Q 022111          201 -----CFPA-LQMHSDWVRSVAWAPNLGLPKSTIASASQDGTVVIWTCAKEGEQWEGRVLKDFKTPVWSVSWSLTGNLLA  274 (302)
Q Consensus       201 -----~~~~-~~~h~~~v~~v~~~p~~~~~~~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~la  274 (302)
                           .... ..+|...|.+++|+|++    ..+++++.|+.|++||+....   ......+|...|.+++|+|+|++|+
T Consensus       826 ~~~~~~~~~~~~~~~~~v~~~~~sp~~----~~l~~~~~dg~v~vwd~~~~~---~~~~~~~h~~~v~~v~~spdg~~l~  898 (1249)
T 3sfz_A          826 IHTSGLLAEIHTGHHSTIQYCDFSPYD----HLAVIALSQYCVELWNIDSRL---KVADCRGHLSWVHGVMFSPDGSSFL  898 (1249)
T ss_dssp             TTTCCEEEEEECSSSSCCCEEEECSST----TEEEEECSSSCEEEEETTTTE---EEEEECCCSSCEEEEEECTTSSEEE
T ss_pred             ecCCCceeEEcCCCCCceEEEEEcCCC----CEEEEEeCCCeEEEEEcCCCc---eeeecCCCccceEEEEECCCCCEEE
Confidence                 0001 12788899999999985    789999999999999997542   1233467888999999999999999


Q ss_pred             EecCC-ceEEeeec
Q 022111          275 VADAN-NVTLWKEA  287 (302)
Q Consensus       275 ~~~~d-~i~~w~~~  287 (302)
                      +++.| .|++|+..
T Consensus       899 s~s~dg~v~vw~~~  912 (1249)
T 3sfz_A          899 TASDDQTIRVWETK  912 (1249)
T ss_dssp             EEETTSCEEEEEHH
T ss_pred             EEeCCCeEEEEEcc
Confidence            99998 79999953

>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}

Probab=100.00  E-value=7.4e-33  Score=241.86  Aligned_cols=259  Identities=16%  Similarity=0.205  Sum_probs=193.5

Q ss_pred             cccccccceeEEEEccCCCEE-EEeeC---CCcEEEEeecCCCceEEEEecCcccCeEEEEeeCCC-CCCEEEEEeCCCe
Q 022111            6 IETGHEDTVHDVAMDFYGKRL-ATASS---DSSIKIIGLSNSASQHLATLKGHRGPVWQVAWAHPK-FGSILASCSYDGQ   80 (302)
Q Consensus         6 ~~~~h~~~v~~~~~s~~~~~l-~s~~~---d~~v~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~~-~~~~l~s~s~D~~   80 (302)
                      ++.+|...|++++|+|++..+ ++|+.   |++|++|++......... ..+|...|.+++|+++. ++++|++++.|+.
T Consensus        13 ~~~~h~~~v~~~~~~p~~~~l~~~~s~~~~d~~v~iw~~~~~~~~~~~-~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~   91 (357)
T 3i2n_A           13 IQKGFNYTVFDCKWVPCSAKFVTMGNFARGTGVIQLYEIQHGDLKLLR-EIEKAKPIKCGTFGATSLQQRYLATGDFGGN   91 (357)
T ss_dssp             EEEECSSCEEEEEECTTSSEEEEEEC--CCCEEEEEEEECSSSEEEEE-EEEESSCEEEEECTTCCTTTCCEEEEETTSC
T ss_pred             hccCCCCceEEEEEcCCCceEEEecCccCCCcEEEEEeCCCCccccee-eecccCcEEEEEEcCCCCCCceEEEecCCCe
Confidence            356799999999999999655 55655   999999999765433332 33799999999998641 1689999999999


Q ss_pred             EEEEEcCCCCceeEEEEecCCCCCeeEEEe------cCCCCCcEEEEEecCCcEEEEEecCCC-Ceeeeeeccc-CCCCe
Q 022111           81 VIIWKEGNQNDWTQAHTFNDHKSSVNSIAW------APHELGLSLACGSSDGNISVFTATADG-GWDTTRIDQA-HPVGV  152 (302)
Q Consensus        81 i~iwd~~~~~~~~~~~~~~~h~~~i~~l~~------~pd~~~~~l~sg~~d~~v~~~~~~~~~-~~~~~~~~~~-h~~~v  152 (302)
                      |++||+.+..  .....+.+|...|.+++|      +|+  +.+|++++.|+.|++||+.... .......... +...+
T Consensus        92 i~iwd~~~~~--~~~~~~~~~~~~v~~~~~~~~~~~s~~--~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v  167 (357)
T 3i2n_A           92 LHIWNLEAPE--MPVYSVKGHKEIINAIDGIGGLGIGEG--APEIVTGSRDGTVKVWDPRQKDDPVANMEPVQGENKRDC  167 (357)
T ss_dssp             EEEECTTSCS--SCSEEECCCSSCEEEEEEESGGGCC-C--CCEEEEEETTSCEEEECTTSCSSCSEEECCCTTSCCCCE
T ss_pred             EEEEeCCCCC--ccEEEEEecccceEEEeeccccccCCC--ccEEEEEeCCCeEEEEeCCCCCCcceeccccCCCCCCce
Confidence            9999997653  245678889999999966      455  6689999999999999987643 2221111111 23378


Q ss_pred             EEEEeCCCCCCCceeecccCCCceeEEEeeCCCcEEEEEEecCccccccccccccCCCceeEEEeeC---CCCCCccEEE
Q 022111          153 TSVSWAPAMAPGALVGLGLLDPVQKLASCGCDNTVKVWKMYNGIWKMDCFPALQMHSDWVRSVAWAP---NLGLPKSTIA  229 (302)
Q Consensus       153 ~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~D~~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~~~p---~~~~~~~~l~  229 (302)
                      .++.|.+..          .+++..|++++.|+.|++||++++..     .....|...|.+++|+|   ++    ..|+
T Consensus       168 ~~~~~~~~~----------~~~~~~l~~~~~d~~i~i~d~~~~~~-----~~~~~~~~~v~~~~~~~~~~~~----~~l~  228 (357)
T 3i2n_A          168 WTVAFGNAY----------NQEERVVCAGYDNGDIKLFDLRNMAL-----RWETNIKNGVCSLEFDRKDISM----NKLV  228 (357)
T ss_dssp             EEEEEECCC----------C-CCCEEEEEETTSEEEEEETTTTEE-----EEEEECSSCEEEEEESCSSSSC----CEEE
T ss_pred             EEEEEEecc----------CCCCCEEEEEccCCeEEEEECccCce-----eeecCCCCceEEEEcCCCCCCC----CEEE
Confidence            888853321          11357899999999999999987631     23356889999999999   64    7899


Q ss_pred             EEecCCeEEEEEeccCCcceee--eeeccCCCcEEEEEEccCCC-EEEEecCC-ceEEeeecC
Q 022111          230 SASQDGTVVIWTCAKEGEQWEG--RVLKDFKTPVWSVSWSLTGN-LLAVADAN-NVTLWKEAV  288 (302)
Q Consensus       230 s~s~D~~i~iwd~~~~~~~~~~--~~~~~~~~~v~~~~~spdg~-~la~~~~d-~i~~w~~~~  288 (302)
                      +++.|+.|++||++........  .....+...|.+++|+|+++ +|++++.| .|++|+...
T Consensus       229 ~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~  291 (357)
T 3i2n_A          229 ATSLEGKFHVFDMRTQHPTKGFASVSEKAHKSTVWQVRHLPQNRELFLTAGGAGGLHLWKYEY  291 (357)
T ss_dssp             EEESTTEEEEEEEEEEETTTEEEEEEEECCSSCEEEEEEETTEEEEEEEEETTSEEEEEEEEC
T ss_pred             EECCCCeEEEEeCcCCCcccceeeeccCCCcCCEEEEEECCCCCcEEEEEeCCCcEEEeecCC
Confidence            9999999999999763221111  11236788999999999998 88999888 799999854

>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}

Probab=100.00  E-value=5.5e-32  Score=241.39  Aligned_cols=259  Identities=19%  Similarity=0.302  Sum_probs=190.2

Q ss_pred             ccccceeEEEEccCCC-EEEEeeCCCcEEEEee----cCCCc----eEEEEecC----------cccCeEEEEeeCCCCC
Q 022111            9 GHEDTVHDVAMDFYGK-RLATASSDSSIKIIGL----SNSAS----QHLATLKG----------HRGPVWQVAWAHPKFG   69 (302)
Q Consensus         9 ~h~~~v~~~~~s~~~~-~l~s~~~d~~v~lw~~----~~~~~----~~~~~~~~----------h~~~v~~v~~~~~~~~   69 (302)
                      .|.+.|++++|+|+++ +||+|+.|+.|++|++    .....    .....+..          |.+.|++++|+++  +
T Consensus        43 ~~~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~--~  120 (425)
T 1r5m_A           43 VKLDNIVSSTWNPLDESILAYGEKNSVARLARIVETDQEGKKYWKLTIIAELRHPFALSASSGKTTNQVTCLAWSHD--G  120 (425)
T ss_dssp             EECSCCSEEEECSSCTTEEEEEETBTEEEEEEEEEC------CEEEEEEEEEECCCCCC------CBCEEEEEECTT--S
T ss_pred             eccCceEEEEECCCCCcEEEEecCCceEEEEEEecccCCccccccccccccccccccccccccCCCCceEEEEEcCC--C
Confidence            4568999999999999 9999999999999999    55331    02233333          6889999999864  8


Q ss_pred             CEEEEEeCCCeEEEEEcCCCCceeEEEEecCCCCCeeEEEecCCCCCcEEEEEecCCcEEEEEecCCCCeeeeeecccCC
Q 022111           70 SILASCSYDGQVIIWKEGNQNDWTQAHTFNDHKSSVNSIAWAPHELGLSLACGSSDGNISVFTATADGGWDTTRIDQAHP  149 (302)
Q Consensus        70 ~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~h~~~i~~l~~~pd~~~~~l~sg~~d~~v~~~~~~~~~~~~~~~~~~~h~  149 (302)
                      ++|++++.|+.|++||...    .....+..|...|.+++|+|+  +.+|++++.|+.|++|++......  ..+. .+.
T Consensus       121 ~~l~~~~~dg~i~i~~~~~----~~~~~~~~~~~~v~~~~~~~~--~~~l~~~~~d~~i~iwd~~~~~~~--~~~~-~~~  191 (425)
T 1r5m_A          121 NSIVTGVENGELRLWNKTG----ALLNVLNFHRAPIVSVKWNKD--GTHIISMDVENVTILWNVISGTVM--QHFE-LKE  191 (425)
T ss_dssp             SEEEEEETTSCEEEEETTS----CEEEEECCCCSCEEEEEECTT--SSEEEEEETTCCEEEEETTTTEEE--EEEC-CC-
T ss_pred             CEEEEEeCCCeEEEEeCCC----CeeeeccCCCccEEEEEECCC--CCEEEEEecCCeEEEEECCCCcEE--EEee-ccc
Confidence            9999999999999999432    356778889999999999998  668999999999999998643211  1111 111


Q ss_pred             CC---------------eEEEEeCCCCC---------------------------CCceeecccCCCceeEEEeeCCCcE
Q 022111          150 VG---------------VTSVSWAPAMA---------------------------PGALVGLGLLDPVQKLASCGCDNTV  187 (302)
Q Consensus       150 ~~---------------v~~~~~~~~~~---------------------------~~~~~~~~~~~~~~~l~s~~~D~~v  187 (302)
                      ..               +.++.|+|+..                           ...+..+...+++..|++++.|+.|
T Consensus       192 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i  271 (425)
T 1r5m_A          192 TGGSSINAENHSGDGSLGVDVEWVDDDKFVIPGPKGAIFVYQITEKTPTGKLIGHHGPISVLEFNDTNKLLLSASDDGTL  271 (425)
T ss_dssp             --------------CCCBSCCEEEETTEEEEECGGGCEEEEETTCSSCSEEECCCSSCEEEEEEETTTTEEEEEETTSCE
T ss_pred             cCccceeeccccCCcceeeEEEEcCCCEEEEEcCCCeEEEEEcCCCceeeeeccCCCceEEEEECCCCCEEEEEcCCCEE
Confidence            11               33333333210                           0011111222345789999999999


Q ss_pred             EEEEEecCccccccccccccCCCceeEEEeeCCCCCCccEEEEEecCCeEEEEEeccCCcceeeeeeccCCCcEEEEEEc
Q 022111          188 KVWKMYNGIWKMDCFPALQMHSDWVRSVAWAPNLGLPKSTIASASQDGTVVIWTCAKEGEQWEGRVLKDFKTPVWSVSWS  267 (302)
Q Consensus       188 ~iwd~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~s  267 (302)
                      ++||+.++    .....+.+|...|.+++|+|++     .|++++.|+.|++||++....   ......+..+|.+++|+
T Consensus       272 ~i~d~~~~----~~~~~~~~~~~~i~~~~~~~~~-----~l~~~~~d~~i~i~d~~~~~~---~~~~~~~~~~i~~~~~s  339 (425)
T 1r5m_A          272 RIWHGGNG----NSQNCFYGHSQSIVSASWVGDD-----KVISCSMDGSVRLWSLKQNTL---LALSIVDGVPIFAGRIS  339 (425)
T ss_dssp             EEECSSSB----SCSEEECCCSSCEEEEEEETTT-----EEEEEETTSEEEEEETTTTEE---EEEEECTTCCEEEEEEC
T ss_pred             EEEECCCC----ccceEecCCCccEEEEEECCCC-----EEEEEeCCCcEEEEECCCCcE---eEecccCCccEEEEEEc
Confidence            99999875    3455667899999999999983     799999999999999975421   22335667889999999


Q ss_pred             cCCCEEEEecCC-ceEEeeecCCc
Q 022111          268 LTGNLLAVADAN-NVTLWKEAVDG  290 (302)
Q Consensus       268 pdg~~la~~~~d-~i~~w~~~~~~  290 (302)
                      |+|++|++++.| .|++|+.....
T Consensus       340 ~~~~~l~~~~~dg~i~i~~~~~~~  363 (425)
T 1r5m_A          340 QDGQKYAVAFMDGQVNVYDLKKLN  363 (425)
T ss_dssp             TTSSEEEEEETTSCEEEEECHHHH
T ss_pred             CCCCEEEEEECCCeEEEEECCCCc
Confidence            999999999988 79999985433

>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}

Probab=100.00  E-value=8.4e-32  Score=230.94  Aligned_cols=241  Identities=21%  Similarity=0.316  Sum_probs=195.9

Q ss_pred             cccccccceeEEEEccCCCEEEEeeCCCcEEEEeecCCC-ceEEEEecCcccCeEEEEeeCCCCCCEEEEEeCCCeEEEE
Q 022111            6 IETGHEDTVHDVAMDFYGKRLATASSDSSIKIIGLSNSA-SQHLATLKGHRGPVWQVAWAHPKFGSILASCSYDGQVIIW   84 (302)
Q Consensus         6 ~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~lw~~~~~~-~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~s~D~~i~iw   84 (302)
                      ....|...|.+++|+|++++|++++.|+.|++|++.... .+.+..+.+|...|.+++|.    +++|++++.|+.|++|
T Consensus        54 ~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~----~~~l~~~~~d~~i~~~  129 (313)
T 3odt_A           54 VVYTGQGFLNSVCYDSEKELLLFGGKDTMINGVPLFATSGEDPLYTLIGHQGNVCSLSFQ----DGVVISGSWDKTAKVW  129 (313)
T ss_dssp             EEEECSSCEEEEEEETTTTEEEEEETTSCEEEEETTCCTTSCC-CEECCCSSCEEEEEEE----TTEEEEEETTSEEEEE
T ss_pred             EeecCCccEEEEEECCCCCEEEEecCCCeEEEEEeeecCCCCcccchhhcccCEEEEEec----CCEEEEEeCCCCEEEE
Confidence            355789999999999999999999999999999985432 34566788999999999993    5799999999999999


Q ss_pred             EcCCCCceeEEEEecCCCCCeeEEEecCCCCCcEEEEEecCCcEEEEEecCCCCeeeeeecccCCCCeEEEEeCCCCCCC
Q 022111           85 KEGNQNDWTQAHTFNDHKSSVNSIAWAPHELGLSLACGSSDGNISVFTATADGGWDTTRIDQAHPVGVTSVSWAPAMAPG  164 (302)
Q Consensus        85 d~~~~~~~~~~~~~~~h~~~i~~l~~~pd~~~~~l~sg~~d~~v~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~  164 (302)
                      |.  .   .....+..|...|.++.|.|.. +..+++++.|+.|++||..    .....+...|...+.+++|+|++   
T Consensus       130 d~--~---~~~~~~~~~~~~v~~~~~~~~~-~~~l~~~~~d~~i~i~d~~----~~~~~~~~~~~~~i~~~~~~~~~---  196 (313)
T 3odt_A          130 KE--G---SLVYNLQAHNASVWDAKVVSFS-ENKFLTASADKTIKLWQND----KVIKTFSGIHNDVVRHLAVVDDG---  196 (313)
T ss_dssp             ET--T---EEEEEEECCSSCEEEEEEEETT-TTEEEEEETTSCEEEEETT----EEEEEECSSCSSCEEEEEEEETT---
T ss_pred             cC--C---cEEEecccCCCceeEEEEccCC-CCEEEEEECCCCEEEEecC----ceEEEEeccCcccEEEEEEcCCC---
Confidence            92  2   3566778899999999998832 5689999999999999933    22234443488899999999863   


Q ss_pred             ceeecccCCCceeEEEeeCCCcEEEEEEecCccccccccccccCCCceeEEEeeCCCCCCccEEEEEecCCeEEEEEecc
Q 022111          165 ALVGLGLLDPVQKLASCGCDNTVKVWKMYNGIWKMDCFPALQMHSDWVRSVAWAPNLGLPKSTIASASQDGTVVIWTCAK  244 (302)
Q Consensus       165 ~~~~~~~~~~~~~l~s~~~D~~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~l~s~s~D~~i~iwd~~~  244 (302)
                                 . |++++.|+.|++||++++    ..+..+.+|...|.+++|+|++     .|++++.|+.|++||++.
T Consensus       197 -----------~-~~~~~~dg~i~i~d~~~~----~~~~~~~~~~~~i~~~~~~~~~-----~l~~~~~dg~v~iwd~~~  255 (313)
T 3odt_A          197 -----------H-FISCSNDGLIKLVDMHTG----DVLRTYEGHESFVYCIKLLPNG-----DIVSCGEDRTVRIWSKEN  255 (313)
T ss_dssp             -----------E-EEEEETTSEEEEEETTTC----CEEEEEECCSSCEEEEEECTTS-----CEEEEETTSEEEEECTTT
T ss_pred             -----------e-EEEccCCCeEEEEECCch----hhhhhhhcCCceEEEEEEecCC-----CEEEEecCCEEEEEECCC
Confidence                       4 999999999999999876    3456678899999999999984     499999999999999876


Q ss_pred             CCcceeeeeeccCCCcEEEEEEccCCCEEEEecCC-ceEEeeecC
Q 022111          245 EGEQWEGRVLKDFKTPVWSVSWSLTGNLLAVADAN-NVTLWKEAV  288 (302)
Q Consensus       245 ~~~~~~~~~~~~~~~~v~~~~~spdg~~la~~~~d-~i~~w~~~~  288 (302)
                      ...   ......+..+|.+++|+|+|++++ ++.| .|++|+...
T Consensus       256 ~~~---~~~~~~~~~~i~~~~~~~~~~~~~-~~~dg~i~iw~~~~  296 (313)
T 3odt_A          256 GSL---KQVITLPAISIWSVDCMSNGDIIV-GSSDNLVRIFSQEK  296 (313)
T ss_dssp             CCE---EEEEECSSSCEEEEEECTTSCEEE-EETTSCEEEEESCG
T ss_pred             Cce---eEEEeccCceEEEEEEccCCCEEE-EeCCCcEEEEeCCC
Confidence            432   233356677899999999999665 5556 899999864

>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*

Probab=100.00  E-value=1.1e-31  Score=243.70  Aligned_cols=246  Identities=18%  Similarity=0.285  Sum_probs=200.7

Q ss_pred             cccccccceeEEEEccCCCEEEEeeCCCcEEEEeecCCCceEEEEecCcccCeEEEEeeCCCCCCEEEEEeCCCeEEEEE
Q 022111            6 IETGHEDTVHDVAMDFYGKRLATASSDSSIKIIGLSNSASQHLATLKGHRGPVWQVAWAHPKFGSILASCSYDGQVIIWK   85 (302)
Q Consensus         6 ~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~s~D~~i~iwd   85 (302)
                      .+.+|...|++++|++++ +|++|+.|++|++||+..  .+.+..+.+|...|.+++|++..++++|++++.|++|++||
T Consensus       157 ~~~~h~~~V~~l~~~~~~-~l~s~s~dg~i~vwd~~~--~~~~~~~~~h~~~v~~l~~~~~~~~~~l~s~s~d~~i~vwd  233 (464)
T 3v7d_B          157 QLSGHDGGVWALKYAHGG-ILVSGSTDRTVRVWDIKK--GCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWK  233 (464)
T ss_dssp             EECCCSSCEEEEEECSTT-EEEEEETTSCEEEEETTT--TEEEEEECCCSSCEEEEEEEESSSCEEEEEEETTSCEEEEE
T ss_pred             EEeCCCcCEEEEEEcCCC-EEEEEeCCCCEEEEECCC--CcEEEEECCCCCccEEEEEecCCCCCEEEEEcCCCcEEEee
Confidence            356899999999999988 999999999999999865  45677889999999999998644578999999999999999


Q ss_pred             cCCCCcee--------------------EEEEecCCCCCeeEEEecCCCCCcEEEEEecCCcEEEEEecCCCCeeeeeec
Q 022111           86 EGNQNDWT--------------------QAHTFNDHKSSVNSIAWAPHELGLSLACGSSDGNISVFTATADGGWDTTRID  145 (302)
Q Consensus        86 ~~~~~~~~--------------------~~~~~~~h~~~i~~l~~~pd~~~~~l~sg~~d~~v~~~~~~~~~~~~~~~~~  145 (302)
                      ++......                    ....+.+|...|.++..  +  +.++++|+.|+.|++||+.+..  ....+ 
T Consensus       234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~--~--~~~l~~~~~d~~i~vwd~~~~~--~~~~~-  306 (464)
T 3v7d_B          234 LPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTVSG--H--GNIVVSGSYDNTLIVWDVAQMK--CLYIL-  306 (464)
T ss_dssp             CCCCCCC------CCSSEEESCGGGCTTEEEEECCCSSCEEEEEE--E--TTEEEEEETTSCEEEEETTTTE--EEEEE-
T ss_pred             CCCCcccccccccCCcceEeeccCCCeEEEEEccCccceEEEEcC--C--CCEEEEEeCCCeEEEEECCCCc--EEEEe-
Confidence            87643211                    24567789999998854  4  4589999999999999987542  22333 


Q ss_pred             ccCCCCeEEEEeCCCCCCCceeecccCCCceeEEEeeCCCcEEEEEEecCccccccccccccCCCceeEEEeeCCCCCCc
Q 022111          146 QAHPVGVTSVSWAPAMAPGALVGLGLLDPVQKLASCGCDNTVKVWKMYNGIWKMDCFPALQMHSDWVRSVAWAPNLGLPK  225 (302)
Q Consensus       146 ~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~D~~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~  225 (302)
                      .+|...|.++.|+|++              ..|++|+.|+.|++||+.++    .++..+.+|...|.+++|++      
T Consensus       307 ~~~~~~v~~~~~~~~~--------------~~l~sg~~dg~i~vwd~~~~----~~~~~~~~h~~~v~~~~~~~------  362 (464)
T 3v7d_B          307 SGHTDRIYSTIYDHER--------------KRCISASMDTTIRIWDLENG----ELMYTLQGHTALVGLLRLSD------  362 (464)
T ss_dssp             CCCSSCEEEEEEETTT--------------TEEEEEETTSCEEEEETTTT----EEEEEECCCSSCEEEEEECS------
T ss_pred             cCCCCCEEEEEEcCCC--------------CEEEEEeCCCcEEEEECCCC----cEEEEEeCCCCcEEEEEEcC------
Confidence            3788999999999864              78999999999999999876    45667889999999999984      


Q ss_pred             cEEEEEecCCeEEEEEeccCCcceeeeeeccCCCcEEEEEEccCCCEEEEecCCceEEeeecCC
Q 022111          226 STIASASQDGTVVIWTCAKEGEQWEGRVLKDFKTPVWSVSWSLTGNLLAVADANNVTLWKEAVD  289 (302)
Q Consensus       226 ~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~la~~~~d~i~~w~~~~~  289 (302)
                      ..|++++.|++|++||++....    .....+...+..++|+|++++|++++++.|++|+....
T Consensus       363 ~~l~s~s~dg~v~vwd~~~~~~----~~~~~~~~~~~~~~~~~~~~~l~~~~dg~i~iwd~~~g  422 (464)
T 3v7d_B          363 KFLVSAAADGSIRGWDANDYSR----KFSYHHTNLSAITTFYVSDNILVSGSENQFNIYNLRSG  422 (464)
T ss_dssp             SEEEEEETTSEEEEEETTTCCE----EEEEECTTCCCEEEEEECSSEEEEEETTEEEEEETTTC
T ss_pred             CEEEEEeCCCcEEEEECCCCce----eeeecCCCCccEEEEEeCCCEEEEecCCeEEEEECCCC
Confidence            5799999999999999976432    12223456678899999999999998558999998643

>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}

Probab=100.00  E-value=1.5e-32  Score=247.67  Aligned_cols=247  Identities=14%  Similarity=0.217  Sum_probs=186.0

Q ss_pred             cceeEEEEccCC--CEEEEeeCCCcEEEEeecCCCce-------------------------------------EEEE-e
Q 022111           12 DTVHDVAMDFYG--KRLATASSDSSIKIIGLSNSASQ-------------------------------------HLAT-L   51 (302)
Q Consensus        12 ~~v~~~~~s~~~--~~l~s~~~d~~v~lw~~~~~~~~-------------------------------------~~~~-~   51 (302)
                      ..|++++|+|++  .+|++++.|++|++|++......                                     +... +
T Consensus        94 ~~V~~l~~~~~~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  173 (447)
T 3dw8_B           94 EKINKIRWLPQKNAAQFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFA  173 (447)
T ss_dssp             CCCCEEEECCCCSSSEEEEEECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEEC
T ss_pred             CceEEEEEcCCCCcceEEEeCCCCeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceEEec
Confidence            889999999998  79999999999999998542110                                     0112 3


Q ss_pred             cCcccCeEEEEeeCCCCCCEEEEEeCCCeEEEEEcCCCCceeEEE-------EecCCCCCeeEEEecCCCCCcEEEEEec
Q 022111           52 KGHRGPVWQVAWAHPKFGSILASCSYDGQVIIWKEGNQNDWTQAH-------TFNDHKSSVNSIAWAPHELGLSLACGSS  124 (302)
Q Consensus        52 ~~h~~~v~~v~~~~~~~~~~l~s~s~D~~i~iwd~~~~~~~~~~~-------~~~~h~~~i~~l~~~pd~~~~~l~sg~~  124 (302)
                      .+|...|++++|+++  +++|++| .|++|++||++...  ....       .+.+|...|.+++|+|+. ..+|++|+.
T Consensus       174 ~~h~~~v~~~~~~~~--~~~l~s~-~d~~i~iwd~~~~~--~~~~~~~~~~~~~~~~~~~v~~~~~~p~~-~~~l~s~~~  247 (447)
T 3dw8_B          174 NAHTYHINSISINSD--YETYLSA-DDLRINLWHLEITD--RSFNIVDIKPANMEELTEVITAAEFHPNS-CNTFVYSSS  247 (447)
T ss_dssp             SCCSSCCCEEEECTT--SSEEEEE-CSSEEEEEETTEEE--EEEEEEECCCSSGGGCCCCEEEEEECSSC-TTEEEEEET
T ss_pred             cCCCcceEEEEEcCC--CCEEEEe-CCCeEEEEECCCCC--ceeeeeecccccccccCcceEEEEECCCC-CcEEEEEeC
Confidence            689999999999864  8899998 89999999987422  2222       356799999999999983 268999999


Q ss_pred             CCcEEEEEecCCCCee--eeeecccCCC------------CeEEEEeCCCCCCCceeecccCCCceeEEEeeCCCcEEEE
Q 022111          125 DGNISVFTATADGGWD--TTRIDQAHPV------------GVTSVSWAPAMAPGALVGLGLLDPVQKLASCGCDNTVKVW  190 (302)
Q Consensus       125 d~~v~~~~~~~~~~~~--~~~~~~~h~~------------~v~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~D~~v~iw  190 (302)
                      |+.|++||++......  ...+. .|..            .|.+++|+|+              +.+|++++. +.|+||
T Consensus       248 dg~i~iwd~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~v~~~~~s~~--------------g~~l~~~~~-~~v~iw  311 (447)
T 3dw8_B          248 KGTIRLCDMRASALCDRHSKLFE-EPEDPSNRSFFSEIISSISDVKFSHS--------------GRYMMTRDY-LSVKVW  311 (447)
T ss_dssp             TSCEEEEETTTCSSSCTTCEEEC-CC-----CCHHHHHTTCEEEEEECTT--------------SSEEEEEES-SEEEEE
T ss_pred             CCeEEEEECcCCccccceeeEec-cCCCccccccccccCceEEEEEECCC--------------CCEEEEeeC-CeEEEE
Confidence            9999999987643211  12222 4543            8999999986              378999988 999999


Q ss_pred             EEecCccccccccccccCCCc---------------eeEEEeeCCCCCCccEEEEEecCCeEEEEEeccCCcceeee---
Q 022111          191 KMYNGIWKMDCFPALQMHSDW---------------VRSVAWAPNLGLPKSTIASASQDGTVVIWTCAKEGEQWEGR---  252 (302)
Q Consensus       191 d~~~~~~~~~~~~~~~~h~~~---------------v~~v~~~p~~~~~~~~l~s~s~D~~i~iwd~~~~~~~~~~~---  252 (302)
                      |++...   .++..+.+|...               +.+++|+|++    .+|++|+.|+.|++||+..........   
T Consensus       312 d~~~~~---~~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~s~~~----~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~  384 (447)
T 3dw8_B          312 DLNMEN---RPVETYQVHEYLRSKLCSLYENDCIFDKFECCWNGSD----SVVMTGSYNNFFRMFDRNTKRDITLEASRE  384 (447)
T ss_dssp             ETTCCS---SCSCCEESCGGGTTTHHHHHHTSGGGCCCCEEECTTS----SEEEEECSTTEEEEEETTTCCEEEEECCST
T ss_pred             eCCCCc---cccceeeccccccccccccccccccccceEEEECCCC----CEEEEeccCCEEEEEEcCCCcceeeeeccc
Confidence            997621   345566667532               2349999995    789999999999999987542110000   


Q ss_pred             --------------------------eeccCCCcEEEEEEccCCCEEEEecCCceEEeeec
Q 022111          253 --------------------------VLKDFKTPVWSVSWSLTGNLLAVADANNVTLWKEA  287 (302)
Q Consensus       253 --------------------------~~~~~~~~v~~~~~spdg~~la~~~~d~i~~w~~~  287 (302)
                                                ...++...|..++|+|+|++||+++.+++.+|...
T Consensus       385 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~la~~~~~~~~~~~~~  445 (447)
T 3dw8_B          385 NNKPRTVLKPRKVCASGKRKKDEISVDSLDFNKKILHTAWHPKENIIAVATTNNLYIFQDK  445 (447)
T ss_dssp             TCCTTCBCCCCCEECSSCCCTTCEEGGGCCTTSCCCEEEECSSSSEEEEECSSCEEEEECC
T ss_pred             ccccccccCCccccccCCcccccccccccccCCceeEEEECCCCCEEEEEecceeeeeccc
Confidence                                      01144567899999999999999999999999754

>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}

Probab=100.00  E-value=2.5e-31  Score=228.74  Aligned_cols=248  Identities=23%  Similarity=0.380  Sum_probs=196.0

Q ss_pred             cccccceeEEEEccCCCEEEEeeCCCcEEEEeecCCCceEEEEecCcccCeEEEEeeCCCCCCEEEEEeCCCeEEEEEcC
Q 022111            8 TGHEDTVHDVAMDFYGKRLATASSDSSIKIIGLSNSASQHLATLKGHRGPVWQVAWAHPKFGSILASCSYDGQVIIWKEG   87 (302)
Q Consensus         8 ~~h~~~v~~~~~s~~~~~l~s~~~d~~v~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~s~D~~i~iwd~~   87 (302)
                      .+|...|++++|+|++++||+|+.|++|++|++..  .+.+..+.+|...+.++.+.    +.++++++.++.+++|+..
T Consensus        64 ~~~~~~V~~v~~~~~~~~l~sgs~Dg~v~iw~~~~--~~~~~~~~~h~~~~~~~~~~----~~~l~s~~~~~~~~~~~~~  137 (318)
T 4ggc_A           64 EQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQ--QKRLRNMTSHSARVGSLSWN----SYILSSGSRSGHIHHHDVR  137 (318)
T ss_dssp             CSTTCCEEEEEECTTSSEEEEEETTSEEEEEETTT--TEEEEEEECCSSCEEEEEEE----TTEEEEEETTSEEEEEETT
T ss_pred             cCCCCeEEEEEECCCCCEEEEEECCCcEEEeecCC--ceeEEEecCccceEEEeecC----CCEEEEEecCCceEeeecC
Confidence            47888999999999999999999999999999865  46778889999999887764    5799999999999999986


Q ss_pred             CCCceeEEEEecCCCCCeeEEEecCCCCCcEEEEEecCCcEEEEEecCCCCe-eeeeecccCCCCeEEEEeCCCCCCCce
Q 022111           88 NQNDWTQAHTFNDHKSSVNSIAWAPHELGLSLACGSSDGNISVFTATADGGW-DTTRIDQAHPVGVTSVSWAPAMAPGAL  166 (302)
Q Consensus        88 ~~~~~~~~~~~~~h~~~i~~l~~~pd~~~~~l~sg~~d~~v~~~~~~~~~~~-~~~~~~~~h~~~v~~~~~~~~~~~~~~  166 (302)
                      ...  .....+.+|...+..+.++++  +.++++++.|+.|++||+++.... ........|...|..+.++|...    
T Consensus       138 ~~~--~~~~~~~~~~~~~~~~~~~~~--~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~----  209 (318)
T 4ggc_A          138 VAE--HHVATLSGHSQEVCGLRWAPD--GRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQS----  209 (318)
T ss_dssp             SSS--CEEEEEECCSSCEEEEEECTT--SSEEEEEETTSCEEEEESSCBTTBSCCSEEECCCCSCEEEEEECTTST----
T ss_pred             CCc--eeEEEEcCccCceEEEEEcCC--CCEEEEEecCcceeEEECCCCcccccceeeecccCCceEEEEecCCCC----
Confidence            543  356677889999999999987  669999999999999998754321 11122235677889999988642    


Q ss_pred             eecccCCCceeEEEeeCCCcEEEEEEecCccccccccccccCCCceeEEEeeCCCCCCccEEEE--EecCCeEEEEEecc
Q 022111          167 VGLGLLDPVQKLASCGCDNTVKVWKMYNGIWKMDCFPALQMHSDWVRSVAWAPNLGLPKSTIAS--ASQDGTVVIWTCAK  244 (302)
Q Consensus       167 ~~~~~~~~~~~l~s~~~D~~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~l~s--~s~D~~i~iwd~~~  244 (302)
                             ..-.+++++.+++|++||......     .....|...+..+.|+|++    ..+++  |+.|+.|+|||+++
T Consensus       210 -------~~~~~~~~~~~~~i~lwd~~~~~~-----~~~~~~~~~v~~~~~~~~~----~~~~~~sg~~d~~i~iwd~~~  273 (318)
T 4ggc_A          210 -------NVLATGGGTSDRHIRIWNVCSGAC-----LSAVDAHSQVCSILWSPHY----KELISGHGFAQNQLVIWKYPT  273 (318)
T ss_dssp             -------TEEEEEECTTTCEEEEEETTTCCE-----EEEEECSSCEEEEEEETTT----TEEEEEECTTTCCEEEEETTT
T ss_pred             -------cEEEEEecCCCCEEEEEecccccc-----cccccceeeeeeeeecccc----cceEEEEEcCCCEEEEEECCC
Confidence                   112356778899999999876421     2234567789999999985    44444  45899999999976


Q ss_pred             CCcceeeeeeccCCCcEEEEEEccCCCEEEEecCC-ceEEeeecC
Q 022111          245 EGEQWEGRVLKDFKTPVWSVSWSLTGNLLAVADAN-NVTLWKEAV  288 (302)
Q Consensus       245 ~~~~~~~~~~~~~~~~v~~~~~spdg~~la~~~~d-~i~~w~~~~  288 (302)
                      ...   ...+.+|..+|++++|+|||++|++|+.| .|+||+..+
T Consensus       274 ~~~---~~~l~gH~~~V~~l~~spdg~~l~S~s~D~~v~iWd~~~  315 (318)
T 4ggc_A          274 MAK---VAELKGHTSRVLSLTMSPDGATVASAAADETLRLWRCFE  315 (318)
T ss_dssp             CCE---EEEECCCSSCEEEEEECTTSSCEEEEETTTEEEEECCSC
T ss_pred             CcE---EEEEcCCCCCEEEEEEcCCCCEEEEEecCCeEEEEECCC
Confidence            432   23457888999999999999999999999 799999754

>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}

Probab=100.00  E-value=4e-31  Score=236.06  Aligned_cols=242  Identities=22%  Similarity=0.359  Sum_probs=189.7

Q ss_pred             ccccceeEEEEccCCCEEEEeeCCCcEEEEeecCCCceEEEEec-CcccCeEEEEeeCCCCCCEEEEEeCCCeEEEEEcC
Q 022111            9 GHEDTVHDVAMDFYGKRLATASSDSSIKIIGLSNSASQHLATLK-GHRGPVWQVAWAHPKFGSILASCSYDGQVIIWKEG   87 (302)
Q Consensus         9 ~h~~~v~~~~~s~~~~~l~s~~~d~~v~lw~~~~~~~~~~~~~~-~h~~~v~~v~~~~~~~~~~l~s~s~D~~i~iwd~~   87 (302)
                      +|.+.+...++++++..+++++.|+.|++|++..+..  ...+. .|...|.+++|+++  +++|++|+.|+.|++||+.
T Consensus        89 ~~~~~~~~~~~~~s~~~l~~~~~d~~v~lw~~~~~~~--~~~~~~~~~~~v~~v~~s~~--~~~l~~~~~dg~i~iwd~~  164 (401)
T 4aez_A           89 GIIDDYYLNLLDWSNLNVVAVALERNVYVWNADSGSV--SALAETDESTYVASVKWSHD--GSFLSVGLGNGLVDIYDVE  164 (401)
T ss_dssp             TCCCCTTCBCEEECTTSEEEEEETTEEEEEETTTCCE--EEEEECCTTCCEEEEEECTT--SSEEEEEETTSCEEEEETT
T ss_pred             CCcCCceEEEEeecCCCEEEEECCCeEEEeeCCCCcE--eEeeecCCCCCEEEEEECCC--CCEEEEECCCCeEEEEECc
Confidence            5655544333344456688899999999999976443  33333 38999999999864  8899999999999999997


Q ss_pred             CCCceeEEEEecCCCCCeeEEEecCCCCCcEEEEEecCCcEEEEEecCCCCeeeeeecccCCCCeEEEEeCCCCCCCcee
Q 022111           88 NQNDWTQAHTFNDHKSSVNSIAWAPHELGLSLACGSSDGNISVFTATADGGWDTTRIDQAHPVGVTSVSWAPAMAPGALV  167 (302)
Q Consensus        88 ~~~~~~~~~~~~~h~~~i~~l~~~pd~~~~~l~sg~~d~~v~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~  167 (302)
                      +.   .....+.+|...|.+++|++    ..+++|+.|+.|++||++.... ....+ ..|...|.+++|+|+       
T Consensus       165 ~~---~~~~~~~~~~~~v~~~~~~~----~~l~~~~~dg~i~i~d~~~~~~-~~~~~-~~~~~~v~~~~~~~~-------  228 (401)
T 4aez_A          165 SQ---TKLRTMAGHQARVGCLSWNR----HVLSSGSRSGAIHHHDVRIANH-QIGTL-QGHSSEVCGLAWRSD-------  228 (401)
T ss_dssp             TC---CEEEEECCCSSCEEEEEEET----TEEEEEETTSEEEEEETTSSSC-EEEEE-ECCSSCEEEEEECTT-------
T ss_pred             CC---eEEEEecCCCCceEEEEECC----CEEEEEcCCCCEEEEecccCcc-eeeEE-cCCCCCeeEEEEcCC-------
Confidence            65   35677889999999999964    4899999999999999974332 22333 378899999999986       


Q ss_pred             ecccCCCceeEEEeeCCCcEEEEEEecCccccccccccccCCCceeEEEeeCCCCCCccEEEEEe--cCCeEEEEEeccC
Q 022111          168 GLGLLDPVQKLASCGCDNTVKVWKMYNGIWKMDCFPALQMHSDWVRSVAWAPNLGLPKSTIASAS--QDGTVVIWTCAKE  245 (302)
Q Consensus       168 ~~~~~~~~~~l~s~~~D~~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~l~s~s--~D~~i~iwd~~~~  245 (302)
                             +.+|++|+.|+.|++||++++    .....+.+|...|.+++|+|++   ...+++++  .|+.|++||++..
T Consensus       229 -------~~~l~s~~~d~~v~iwd~~~~----~~~~~~~~~~~~v~~~~~~p~~---~~ll~~~~gs~d~~i~i~d~~~~  294 (401)
T 4aez_A          229 -------GLQLASGGNDNVVQIWDARSS----IPKFTKTNHNAAVKAVAWCPWQ---SNLLATGGGTMDKQIHFWNAATG  294 (401)
T ss_dssp             -------SSEEEEEETTSCEEEEETTCS----SEEEEECCCSSCCCEEEECTTS---TTEEEEECCTTTCEEEEEETTTC
T ss_pred             -------CCEEEEEeCCCeEEEccCCCC----CccEEecCCcceEEEEEECCCC---CCEEEEecCCCCCEEEEEECCCC
Confidence                   378999999999999999875    3445667899999999999986   46777766  8999999999764


Q ss_pred             CcceeeeeeccCCCcEEEEEEccCCCEEEEec--CC-ceEEeeecC
Q 022111          246 GEQWEGRVLKDFKTPVWSVSWSLTGNLLAVAD--AN-NVTLWKEAV  288 (302)
Q Consensus       246 ~~~~~~~~~~~~~~~v~~~~~spdg~~la~~~--~d-~i~~w~~~~  288 (302)
                      ...   .. ..+...|.+++|+|+|++|++++  .+ .|++|+...
T Consensus       295 ~~~---~~-~~~~~~v~~~~~s~~~~~l~~~~g~~dg~i~v~~~~~  336 (401)
T 4aez_A          295 ARV---NT-VDAGSQVTSLIWSPHSKEIMSTHGFPDNNLSIWSYSS  336 (401)
T ss_dssp             CEE---EE-EECSSCEEEEEECSSSSEEEEEECTTTCEEEEEEEET
T ss_pred             CEE---EE-EeCCCcEEEEEECCCCCeEEEEeecCCCcEEEEecCC
Confidence            321   11 24567899999999999999853  56 799999864

>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1

Probab=100.00  E-value=1.6e-31  Score=241.17  Aligned_cols=244  Identities=21%  Similarity=0.416  Sum_probs=195.2

Q ss_pred             ccccccccceeEEEEccCCCEEEEeeCCCcEEEEeecCCCceEEEEecCcccCeEEEEeeCCCCCCEEEEEeCCCeEEEE
Q 022111            5 KIETGHEDTVHDVAMDFYGKRLATASSDSSIKIIGLSNSASQHLATLKGHRGPVWQVAWAHPKFGSILASCSYDGQVIIW   84 (302)
Q Consensus         5 ~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~s~D~~i~iw   84 (302)
                      ..+.+|...|++++|  ++++|++|+.|++|++||+...  +.+..+.+|...|.+++|+    +.+|++|+.|++|++|
T Consensus       167 ~~~~~h~~~v~~l~~--~~~~l~sg~~dg~i~vwd~~~~--~~~~~~~~h~~~v~~l~~~----~~~l~s~s~dg~i~vw  238 (435)
T 1p22_A          167 RILTGHTGSVLCLQY--DERVIITGSSDSTVRVWDVNTG--EMLNTLIHHCEAVLHLRFN----NGMMVTCSKDRSIAVW  238 (435)
T ss_dssp             EEECCCSSCEEEEEC--CSSEEEEEETTSCEEEEESSSC--CEEEEECCCCSCEEEEECC----TTEEEEEETTSCEEEE
T ss_pred             EEEcCCCCcEEEEEE--CCCEEEEEcCCCeEEEEECCCC--cEEEEEcCCCCcEEEEEEc----CCEEEEeeCCCcEEEE
Confidence            346689999999887  6889999999999999998653  4677888999999999995    4689999999999999


Q ss_pred             EcCCCCceeEEEEecCCCCCeeEEEecCCCCCcEEEEEecCCcEEEEEecCCCCeeeeeecccCCCCeEEEEeCCCCCCC
Q 022111           85 KEGNQNDWTQAHTFNDHKSSVNSIAWAPHELGLSLACGSSDGNISVFTATADGGWDTTRIDQAHPVGVTSVSWAPAMAPG  164 (302)
Q Consensus        85 d~~~~~~~~~~~~~~~h~~~i~~l~~~pd~~~~~l~sg~~d~~v~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~  164 (302)
                      |+++.........+.+|...|.+++|.    +.++++|+.|+.|++||+++...  ...+. .|...+.++.|+      
T Consensus       239 d~~~~~~~~~~~~~~~~~~~v~~~~~~----~~~l~s~~~dg~i~vwd~~~~~~--~~~~~-~~~~~v~~~~~~------  305 (435)
T 1p22_A          239 DMASPTDITLRRVLVGHRAAVNVVDFD----DKYIVSASGDRTIKVWNTSTCEF--VRTLN-GHKRGIACLQYR------  305 (435)
T ss_dssp             ECSSSSCCEEEEEECCCSSCEEEEEEE----TTEEEEEETTSEEEEEETTTCCE--EEEEE-CCSSCEEEEEEE------
T ss_pred             eCCCCCCceeeeEecCCCCcEEEEEeC----CCEEEEEeCCCeEEEEECCcCcE--EEEEc-CCCCcEEEEEeC------
Confidence            998765444446788899999999993    45899999999999999875432  23333 788889999884      


Q ss_pred             ceeecccCCCceeEEEeeCCCcEEEEEEecCccccccccccccCCCceeEEEeeCCCCCCccEEEEEecCCeEEEEEecc
Q 022111          165 ALVGLGLLDPVQKLASCGCDNTVKVWKMYNGIWKMDCFPALQMHSDWVRSVAWAPNLGLPKSTIASASQDGTVVIWTCAK  244 (302)
Q Consensus       165 ~~~~~~~~~~~~~l~s~~~D~~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~l~s~s~D~~i~iwd~~~  244 (302)
                                +..|++|+.|+.|++||++++    .++..+.+|...|.+++|+      +..|++|+.||.|++||++.
T Consensus       306 ----------~~~l~~g~~dg~i~iwd~~~~----~~~~~~~~h~~~v~~~~~~------~~~l~sg~~dg~i~vwd~~~  365 (435)
T 1p22_A          306 ----------DRLVVSGSSDNTIRLWDIECG----ACLRVLEGHEELVRCIRFD------NKRIVSGAYDGKIKVWDLVA  365 (435)
T ss_dssp             ----------TTEEEEEETTSCEEEEETTTC----CEEEEECCCSSCEEEEECC------SSEEEEEETTSCEEEEEHHH
T ss_pred             ----------CCEEEEEeCCCeEEEEECCCC----CEEEEEeCCcCcEEEEEec------CCEEEEEeCCCcEEEEECCC
Confidence                      268999999999999999876    4566788999999999993      36799999999999999865


Q ss_pred             CCcce------eeeeeccCCCcEEEEEEccCCCEEEEecCC-ceEEeeecCCce
Q 022111          245 EGEQW------EGRVLKDFKTPVWSVSWSLTGNLLAVADAN-NVTLWKEAVDGE  291 (302)
Q Consensus       245 ~~~~~------~~~~~~~~~~~v~~~~~spdg~~la~~~~d-~i~~w~~~~~~~  291 (302)
                      .....      ....+..|..+|.+++|  ++++|++++.| .|++|+...+..
T Consensus       366 ~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~l~s~s~Dg~i~iwd~~~~~~  417 (435)
T 1p22_A          366 ALDPRAPAGTLCLRTLVEHSGRVFRLQF--DEFQIVSSSHDDTILIWDFLNDPA  417 (435)
T ss_dssp             HTSTTSCTTTTEEEEECCCSSCCCCEEE--CSSCEEECCSSSEEEEEC------
T ss_pred             CCCccccccchheeeccCCCCCeEEEEe--CCCEEEEEeCCCEEEEEECCCCCC
Confidence            32110      12334678889999999  78899999988 799999865443

>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*

Probab=100.00  E-value=6.9e-32  Score=243.70  Aligned_cols=214  Identities=17%  Similarity=0.180  Sum_probs=168.5

Q ss_pred             EEecCcccCeEEEEeeCCCCCCEEEEEeCCCeEEEEEcCCCCceeEEEEecCCCCCeeEEEecCCCCCcEEEEEecCCcE
Q 022111           49 ATLKGHRGPVWQVAWAHPKFGSILASCSYDGQVIIWKEGNQNDWTQAHTFNDHKSSVNSIAWAPHELGLSLACGSSDGNI  128 (302)
Q Consensus        49 ~~~~~h~~~v~~v~~~~~~~~~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~h~~~i~~l~~~pd~~~~~l~sg~~d~~v  128 (302)
                      ....+|...|++|+|+|. ++++||+|+.||+|+|||+..... .....+.+|.+.|++|+|+|.. +.+|++|+.|++|
T Consensus       113 ~~~~~~~~~V~~l~~~P~-~~~~lasGs~dg~i~lWd~~~~~~-~~~~~~~gH~~~V~~l~f~p~~-~~~l~s~s~D~~v  189 (435)
T 4e54_B          113 QKAAPFDRRATSLAWHPT-HPSTVAVGSKGGDIMLWNFGIKDK-PTFIKGIGAGGSITGLKFNPLN-TNQFYASSMEGTT  189 (435)
T ss_dssp             CEEEECSSCEEEEEECSS-CTTCEEEEETTSCEEEECSSCCSC-CEEECCCSSSCCCCEEEECSSC-TTEEEEECSSSCE
T ss_pred             ccCCCCCCCEEEEEEeCC-CCCEEEEEeCCCEEEEEECCCCCc-eeEEEccCCCCCEEEEEEeCCC-CCEEEEEeCCCEE
Confidence            345678899999999763 578999999999999999876532 3445677899999999999853 5689999999999


Q ss_pred             EEEEecCCCCeeeeeecccCCCCeEEEEeCCCCCCCceeecccCCCceeEEEeeCCCcEEEEEEecCccccccccccccC
Q 022111          129 SVFTATADGGWDTTRIDQAHPVGVTSVSWAPAMAPGALVGLGLLDPVQKLASCGCDNTVKVWKMYNGIWKMDCFPALQMH  208 (302)
Q Consensus       129 ~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~D~~v~iwd~~~~~~~~~~~~~~~~h  208 (302)
                      ++||++.. ..........+...+.++.|+|+              +.+|++|+.|+.|++||++..     .+..+.+|
T Consensus       190 ~iwd~~~~-~~~~~~~~~~~~~~~~~~~~~~~--------------~~~l~~g~~dg~i~~wd~~~~-----~~~~~~~h  249 (435)
T 4e54_B          190 RLQDFKGN-ILRVFASSDTINIWFCSLDVSAS--------------SRMVVTGDNVGNVILLNMDGK-----ELWNLRMH  249 (435)
T ss_dssp             EEEETTSC-EEEEEECCSSCSCCCCCEEEETT--------------TTEEEEECSSSBEEEEESSSC-----BCCCSBCC
T ss_pred             EEeeccCC-ceeEEeccCCCCccEEEEEECCC--------------CCEEEEEeCCCcEeeeccCcc-----eeEEEecc
Confidence            99998642 22212111233445778888876              478999999999999998653     45678899


Q ss_pred             CCceeEEEeeCCCCCCccEEEEEecCCeEEEEEeccCCcceeeeeeccCCCcEEEEEEccCCCEEEEecCC-ceEEeeec
Q 022111          209 SDWVRSVAWAPNLGLPKSTIASASQDGTVVIWTCAKEGEQWEGRVLKDFKTPVWSVSWSLTGNLLAVADAN-NVTLWKEA  287 (302)
Q Consensus       209 ~~~v~~v~~~p~~~~~~~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~la~~~~d-~i~~w~~~  287 (302)
                      ...|++++|+|++   ...|++++.|++|+|||++............+|..+|.+++|+|+|++|++++.| .|++|+..
T Consensus       250 ~~~v~~v~~~p~~---~~~~~s~s~d~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~spdg~~l~s~~~D~~i~iwd~~  326 (435)
T 4e54_B          250 KKKVTHVALNPCC---DWFLATASVDQTVKIWDLRQVRGKASFLYSLPHRHPVNAACFSPDGARLLTTDQKSEIRVYSAS  326 (435)
T ss_dssp             SSCEEEEEECTTC---SSEEEEEETTSBCCEEETTTCCSSSCCSBCCBCSSCEEECCBCTTSSEEEEEESSSCEEEEESS
T ss_pred             cceEEeeeecCCC---ceEEEEecCcceeeEEecccccccceEEEeeeccccccceeECCCCCeeEEEcCCCEEEEEECC
Confidence            9999999999986   4689999999999999997643221112235678899999999999999999998 79999975


Q ss_pred             C
Q 022111          288 V  288 (302)
Q Consensus       288 ~  288 (302)
                      .
T Consensus       327 ~  327 (435)
T 4e54_B          327 Q  327 (435)
T ss_dssp             S
T ss_pred             C
Confidence            4

>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*

Probab=100.00  E-value=2.7e-31  Score=267.77  Aligned_cols=268  Identities=20%  Similarity=0.258  Sum_probs=204.9

Q ss_pred             cccccccceeEEEEccCCCEEEEeeCCCcEEEEeecCCCceEEEEecCcccCeEEEEeeCCCCCCEEEEEeCCCeEEEEE
Q 022111            6 IETGHEDTVHDVAMDFYGKRLATASSDSSIKIIGLSNSASQHLATLKGHRGPVWQVAWAHPKFGSILASCSYDGQVIIWK   85 (302)
Q Consensus         6 ~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~s~D~~i~iwd   85 (302)
                      .+.+|...|++++|+|++++|++++.|++|++||+.+  .+.+..+.+|...|.+++|+++.++.++++++.|++|++||
T Consensus       652 ~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~--~~~~~~~~~~~~~v~~~~~~~~~~~~~l~sg~~d~~v~vwd  729 (1249)
T 3sfz_A          652 DIKAHEDEVLCCAFSSDDSYIATCSADKKVKIWDSAT--GKLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWD  729 (1249)
T ss_dssp             EECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTT--CCEEEEEECCSSCEEEEEECSSSSCCEEEEEETTSCEEEEE
T ss_pred             EeccCCCCEEEEEEecCCCEEEEEeCCCeEEEEECCC--CceEEEEcCCCCcEEEEEEecCCCceEEEEEeCCCeEEEEE
Confidence            3568999999999999999999999999999999875  35677889999999999998754567899999999999999


Q ss_pred             cCCCCceeEEEEecCCCCCeeEEEecCCCCCcEEEEEecCCcEEEEEecCCCCeeeeeec----------ccCCCCeEEE
Q 022111           86 EGNQNDWTQAHTFNDHKSSVNSIAWAPHELGLSLACGSSDGNISVFTATADGGWDTTRID----------QAHPVGVTSV  155 (302)
Q Consensus        86 ~~~~~~~~~~~~~~~h~~~i~~l~~~pd~~~~~l~sg~~d~~v~~~~~~~~~~~~~~~~~----------~~h~~~v~~~  155 (302)
                      ++++.   +...+.+|...|.+++|+|+  +..+++|+.|+.|++||+............          ..+...+.++
T Consensus       730 ~~~~~---~~~~~~~h~~~v~~~~~sp~--~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~  804 (1249)
T 3sfz_A          730 LNQKE---CRNTMFGHTNSVNHCRFSPD--DELLASCSADGTLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCC  804 (1249)
T ss_dssp             TTSSS---EEEEECCCSSCEEEEEECSS--TTEEEEEESSSEEEEEEGGGTEEEEEEECCCCC--------CCCCCBCCC
T ss_pred             CCCcc---hhheecCCCCCEEEEEEecC--CCEEEEEECCCeEEEEeCCCCcccceecccccccccCCccccccceEEEE
Confidence            97753   66778899999999999998  669999999999999998654221111100          0112245555


Q ss_pred             EeCCCCCC----------------------------CceeecccCCCceeEEEeeCCCcEEEEEEecCcccccccccccc
Q 022111          156 SWAPAMAP----------------------------GALVGLGLLDPVQKLASCGCDNTVKVWKMYNGIWKMDCFPALQM  207 (302)
Q Consensus       156 ~~~~~~~~----------------------------~~~~~~~~~~~~~~l~s~~~D~~v~iwd~~~~~~~~~~~~~~~~  207 (302)
                      +|+|++..                            ..+..+...+++..+++++.|+.|++||+.++    .....+.+
T Consensus       805 ~~s~dg~~l~~~~~~~v~~~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~v~vwd~~~~----~~~~~~~~  880 (1249)
T 3sfz_A          805 SWSADGDKIIVAAKNKVLLFDIHTSGLLAEIHTGHHSTIQYCDFSPYDHLAVIALSQYCVELWNIDSR----LKVADCRG  880 (1249)
T ss_dssp             CBCTTSSEEEEEETTEEEEEETTTCCEEEEEECSSSSCCCEEEECSSTTEEEEECSSSCEEEEETTTT----EEEEEECC
T ss_pred             EECCCCCEEEEEcCCcEEEEEecCCCceeEEcCCCCCceEEEEEcCCCCEEEEEeCCCeEEEEEcCCC----ceeeecCC
Confidence            56554310                            11111223345688999999999999999876    34566789


Q ss_pred             CCCceeEEEeeCCCCCCccEEEEEecCCeEEEEEeccCCc----------------------------------------
Q 022111          208 HSDWVRSVAWAPNLGLPKSTIASASQDGTVVIWTCAKEGE----------------------------------------  247 (302)
Q Consensus       208 h~~~v~~v~~~p~~~~~~~~l~s~s~D~~i~iwd~~~~~~----------------------------------------  247 (302)
                      |.+.|.+++|+|++    ..|++++.|+.|++|++.....                                        
T Consensus       881 h~~~v~~v~~spdg----~~l~s~s~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  956 (1249)
T 3sfz_A          881 HLSWVHGVMFSPDG----SSFLTASDDQTIRVWETKKVCKNSAIVLKQEIDVVFQENETMVLAVDNIRGLQLIAGKTGQI  956 (1249)
T ss_dssp             CSSCEEEEEECTTS----SEEEEEETTSCEEEEEHHHHHSCCSSSEEEEEEEEEETTEEEEEEEESSSSEEEEEESSCCE
T ss_pred             CccceEEEEECCCC----CEEEEEeCCCeEEEEEccccceeeeecccceeeEEEcCCCcEEEEecCCcceEEEecCcceE
Confidence            99999999999985    7899999999999999642000                                        


Q ss_pred             ------------------------------ce------eeeeeccCCCcEEEEEEccCCCEEEEecCC-ceEEeeecC
Q 022111          248 ------------------------------QW------EGRVLKDFKTPVWSVSWSLTGNLLAVADAN-NVTLWKEAV  288 (302)
Q Consensus       248 ------------------------------~~------~~~~~~~~~~~v~~~~~spdg~~la~~~~d-~i~~w~~~~  288 (302)
                                                    .|      .......|...|.+++|+|+|++|++++.| .|++|+...
T Consensus       957 ~~~~~~~i~~~~~sp~g~~l~~g~~~g~i~i~d~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~dg~i~vwd~~~ 1034 (1249)
T 3sfz_A          957 DYLPEAQVSCCCLSPHLEYVAFGDEDGAIKIIELPNNRVFSSGVGHKKAVRHIQFTADGKTLISSSEDSVIQVWNWQT 1034 (1249)
T ss_dssp             EEECCSCEEEEEECTTSSEEEEEETTSCCEEEETTTTSCEEECCCCSSCCCCEEECSSSSCEEEECSSSBEEEEETTT
T ss_pred             EEcccCcEEEEEEcCCCCEEEEEcCCCCEEEEEcCCCceeeecccCCCceEEEEECCCCCEEEEEcCCCEEEEEECCC
Confidence                                          00      001113456678899999999999999988 799999754

>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A

Probab=100.00  E-value=3.5e-31  Score=236.38  Aligned_cols=249  Identities=17%  Similarity=0.269  Sum_probs=191.7

Q ss_pred             eEEEEccCCC-EEEEeeCCCcEEEEeecCCCc--eEEEEecCcccCeEEEEeeCCCCCCEEEEEeCCCeEEEEEcCCCCc
Q 022111           15 HDVAMDFYGK-RLATASSDSSIKIIGLSNSAS--QHLATLKGHRGPVWQVAWAHPKFGSILASCSYDGQVIIWKEGNQND   91 (302)
Q Consensus        15 ~~~~~s~~~~-~l~s~~~d~~v~lw~~~~~~~--~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~s~D~~i~iwd~~~~~~   91 (302)
                      ..++++++.. ++++++.||.|+||++.....  ..+..+.+|.+.|++++|++. ++++|++|+.|++|++||+.+...
T Consensus        38 ~~~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~~~~~~~~~~h~~~V~~~~~~p~-~~~~l~s~s~dg~v~vw~~~~~~~  116 (402)
T 2aq5_A           38 GFCAVNPKFMALICEASGGGAFLVLPLGKTGRVDKNVPLVCGHTAPVLDIAWCPH-NDNVIASGSEDCTVMVWEIPDGGL  116 (402)
T ss_dssp             CSEEECSSEEEEEBCCSSSCCEEEEETTCCEECCTTCCCBCCCSSCEEEEEECTT-CTTEEEEEETTSEEEEEECCTTCC
T ss_pred             CcEEECCCeEEEEEEEcCCCEEEEEECccCCCCCCCCceEecCCCCEEEEEeCCC-CCCEEEEEeCCCeEEEEEccCCCC
Confidence            3467777664 444578999999999854211  234457899999999999862 378999999999999999976521


Q ss_pred             e----eEEEEecCCCCCeeEEEecCCCCCcEEEEEecCCcEEEEEecCCCCeeeeeec-ccCCCCeEEEEeCCCCCCCce
Q 022111           92 W----TQAHTFNDHKSSVNSIAWAPHELGLSLACGSSDGNISVFTATADGGWDTTRID-QAHPVGVTSVSWAPAMAPGAL  166 (302)
Q Consensus        92 ~----~~~~~~~~h~~~i~~l~~~pd~~~~~l~sg~~d~~v~~~~~~~~~~~~~~~~~-~~h~~~v~~~~~~~~~~~~~~  166 (302)
                      .    .+...+.+|...|.+++|+|+. ..+|++++.|+.|++||+....  ....+. ..|...|.+++|+|++     
T Consensus       117 ~~~~~~~~~~~~~h~~~v~~~~~~p~~-~~~l~s~~~dg~i~iwd~~~~~--~~~~~~~~~~~~~v~~~~~~~~~-----  188 (402)
T 2aq5_A          117 VLPLREPVITLEGHTKRVGIVAWHPTA-QNVLLSAGCDNVILVWDVGTGA--AVLTLGPDVHPDTIYSVDWSRDG-----  188 (402)
T ss_dssp             SSCBCSCSEEEECCSSCEEEEEECSSB-TTEEEEEETTSCEEEEETTTTE--EEEEECTTTCCSCEEEEEECTTS-----
T ss_pred             ccccCCceEEecCCCCeEEEEEECcCC-CCEEEEEcCCCEEEEEECCCCC--ccEEEecCCCCCceEEEEECCCC-----
Confidence            1    2456778899999999999983 2589999999999999987542  223332 3788999999999863     


Q ss_pred             eecccCCCceeEEEeeCCCcEEEEEEecCcccccccccc-ccCCCc-eeEEEeeCCCCCCccEEEEE---ecCCeEEEEE
Q 022111          167 VGLGLLDPVQKLASCGCDNTVKVWKMYNGIWKMDCFPAL-QMHSDW-VRSVAWAPNLGLPKSTIASA---SQDGTVVIWT  241 (302)
Q Consensus       167 ~~~~~~~~~~~l~s~~~D~~v~iwd~~~~~~~~~~~~~~-~~h~~~-v~~v~~~p~~~~~~~~l~s~---s~D~~i~iwd  241 (302)
                               .+|++++.|+.|++||++++.    .+..+ .+|.+. +.++.|+|++    ..|++|   +.|+.|++||
T Consensus       189 ---------~~l~~~~~d~~i~iwd~~~~~----~~~~~~~~~~~~~~~~~~~~~~~----~~l~~g~~~~~d~~i~iwd  251 (402)
T 2aq5_A          189 ---------ALICTSCRDKRVRVIEPRKGT----VVAEKDRPHEGTRPVHAVFVSEG----KILTTGFSRMSERQVALWD  251 (402)
T ss_dssp             ---------SCEEEEETTSEEEEEETTTTE----EEEEEECSSCSSSCCEEEECSTT----EEEEEEECTTCCEEEEEEE
T ss_pred             ---------CEEEEEecCCcEEEEeCCCCc----eeeeeccCCCCCcceEEEEcCCC----cEEEEeccCCCCceEEEEc
Confidence                     789999999999999998763    34455 678776 8999999985    788888   7999999999


Q ss_pred             eccCCcceeeeeeccCCCcEEEEEEccCCCEEEEe-cCC-ceEEeeecCCc
Q 022111          242 CAKEGEQWEGRVLKDFKTPVWSVSWSLTGNLLAVA-DAN-NVTLWKEAVDG  290 (302)
Q Consensus       242 ~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~la~~-~~d-~i~~w~~~~~~  290 (302)
                      ++...... ......+...+.+++|+|+|++|+++ +.| .|++|+.....
T Consensus       252 ~~~~~~~~-~~~~~~~~~~v~~~~~s~~~~~l~~~g~~dg~i~i~d~~~~~  301 (402)
T 2aq5_A          252 TKHLEEPL-SLQELDTSSGVLLPFFDPDTNIVYLCGKGDSSIRYFEITSEA  301 (402)
T ss_dssp             TTBCSSCS-EEEECCCCSSCEEEEEETTTTEEEEEETTCSCEEEEEECSST
T ss_pred             CccccCCc-eEEeccCCCceeEEEEcCCCCEEEEEEcCCCeEEEEEecCCC
Confidence            98643211 12223556779999999999999654 456 79999987655

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=100.00  E-value=4.9e-31  Score=254.85  Aligned_cols=251  Identities=21%  Similarity=0.287  Sum_probs=206.0

Q ss_pred             cccccccceeEEEEccCCCEEEEeeCCCcEEEEeecCCCceEEEEecCcccCeEEEEeeCCCCCCEEEEEeCCCeEEEEE
Q 022111            6 IETGHEDTVHDVAMDFYGKRLATASSDSSIKIIGLSNSASQHLATLKGHRGPVWQVAWAHPKFGSILASCSYDGQVIIWK   85 (302)
Q Consensus         6 ~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~s~D~~i~iwd   85 (302)
                      .+.+|...|++++|+|++++|++++.|++|++|++..  .+.+..+.+|.+.|++++|+++  +++|++++.|++|++||
T Consensus        50 ~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~--~~~~~~~~~~~~~v~~~~~s~~--~~~l~~~~~dg~i~vw~  125 (814)
T 3mkq_A           50 SIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFNYNT--GEKVVDFEAHPDYIRSIAVHPT--KPYVLSGSDDLTVKLWN  125 (814)
T ss_dssp             EEECCSSCEEEEEEEGGGTEEEEEETTSEEEEEETTT--CCEEEEEECCSSCEEEEEECSS--SSEEEEEETTSEEEEEE
T ss_pred             EEecCCCcEEEEEEeCCCCEEEEEeCCCeEEEEECCC--CcEEEEEecCCCCEEEEEEeCC--CCEEEEEcCCCEEEEEE
Confidence            4558999999999999999999999999999999865  3466788899999999999864  78999999999999999


Q ss_pred             cCCCCceeEEEEecCCCCCeeEEEecCCCCCcEEEEEecCCcEEEEEecCCCCeeeeeecccCCCCeEEEEeCCCCCCCc
Q 022111           86 EGNQNDWTQAHTFNDHKSSVNSIAWAPHELGLSLACGSSDGNISVFTATADGGWDTTRIDQAHPVGVTSVSWAPAMAPGA  165 (302)
Q Consensus        86 ~~~~~~~~~~~~~~~h~~~i~~l~~~pd~~~~~l~sg~~d~~v~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~  165 (302)
                      +++..  .....+.+|..+|.+++|+|+. +..+++++.|+.|++||+......  ..+...+...+..++|+|..    
T Consensus       126 ~~~~~--~~~~~~~~~~~~v~~~~~~p~~-~~~l~~~~~dg~v~vwd~~~~~~~--~~~~~~~~~~v~~~~~~~~~----  196 (814)
T 3mkq_A          126 WENNW--ALEQTFEGHEHFVMCVAFNPKD-PSTFASGCLDRTVKVWSLGQSTPN--FTLTTGQERGVNYVDYYPLP----  196 (814)
T ss_dssp             GGGTS--EEEEEEECCSSCEEEEEEETTE-EEEEEEEETTSEEEEEETTCSSCS--EEEECCCTTCCCEEEECCST----
T ss_pred             CCCCc--eEEEEEcCCCCcEEEEEEEcCC-CCEEEEEeCCCeEEEEECCCCcce--eEEecCCCCCEEEEEEEECC----
Confidence            97642  3566778899999999999932 668999999999999998654322  23333455789999999832    


Q ss_pred             eeecccCCCceeEEEeeCCCcEEEEEEecCccccccccccccCCCceeEEEeeCCCCCCccEEEEEecCCeEEEEEeccC
Q 022111          166 LVGLGLLDPVQKLASCGCDNTVKVWKMYNGIWKMDCFPALQMHSDWVRSVAWAPNLGLPKSTIASASQDGTVVIWTCAKE  245 (302)
Q Consensus       166 ~~~~~~~~~~~~l~s~~~D~~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~l~s~s~D~~i~iwd~~~~  245 (302)
                              ++..|++++.|+.|++||+.++    .+...+.+|...|.+++|+|++    ..|++++.||.|++||+...
T Consensus       197 --------~~~~l~~~~~dg~i~~~d~~~~----~~~~~~~~~~~~v~~~~~~~~~----~~l~~~~~dg~v~vwd~~~~  260 (814)
T 3mkq_A          197 --------DKPYMITASDDLTIKIWDYQTK----SCVATLEGHMSNVSFAVFHPTL----PIIISGSEDGTLKIWNSSTY  260 (814)
T ss_dssp             --------TCCEEEEECTTSEEEEEETTTT----EEEEEEECCSSCEEEEEECSSS----SEEEEEETTSCEEEEETTTC
T ss_pred             --------CCCEEEEEeCCCEEEEEECCCC----cEEEEEcCCCCCEEEEEEcCCC----CEEEEEeCCCeEEEEECCCC
Confidence                    2478999999999999999775    3456678899999999999995    78999999999999998754


Q ss_pred             CcceeeeeeccCCCcEEEEEEccCCC--EEEEecCCceEEeeecC
Q 022111          246 GEQWEGRVLKDFKTPVWSVSWSLTGN--LLAVADANNVTLWKEAV  288 (302)
Q Consensus       246 ~~~~~~~~~~~~~~~v~~~~~spdg~--~la~~~~d~i~~w~~~~  288 (302)
                      ..   ......+...+++++|+|+|.  +++++..+++.+|+...
T Consensus       261 ~~---~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  302 (814)
T 3mkq_A          261 KV---EKTLNVGLERSWCIATHPTGRKNYIASGFDNGFTVLSLGN  302 (814)
T ss_dssp             SE---EEEECCSSSSEEEEEECTTCGGGEEEEEETTEEEEEECSC
T ss_pred             cE---EEEeecCCCcEEEEEEccCCCceEEEEEeCCCEEEEEcCC
Confidence            22   223355667899999999997  57777777899998643

>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}

Probab=100.00  E-value=4e-31  Score=238.13  Aligned_cols=255  Identities=12%  Similarity=0.113  Sum_probs=187.8

Q ss_pred             ccccceeEEEEccCCCEEEEeeCCCcEEEEeecCC-CceEEEEecC------------cccCeEEEEeeCCCCCCEEEEE
Q 022111            9 GHEDTVHDVAMDFYGKRLATASSDSSIKIIGLSNS-ASQHLATLKG------------HRGPVWQVAWAHPKFGSILASC   75 (302)
Q Consensus         9 ~h~~~v~~~~~s~~~~~l~s~~~d~~v~lw~~~~~-~~~~~~~~~~------------h~~~v~~v~~~~~~~~~~l~s~   75 (302)
                      +|...|++++|++++++|++|+.|++|++||+... ..+.+..+.+            +...+.++.+....++.+|+++
T Consensus       109 ~h~~~v~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  188 (437)
T 3gre_A          109 DCSSTVTQITMIPNFDAFAVSSKDGQIIVLKVNHYQQESEVKFLNCECIRKINLKNFGKNEYAVRMRAFVNEEKSLLVAL  188 (437)
T ss_dssp             ECSSCEEEEEECTTSSEEEEEETTSEEEEEEEEEEEETTEEEEEEEEEEEEEEGGGGSSCCCEEEEEEEECSSCEEEEEE
T ss_pred             cCCCCEEEEEEeCCCCEEEEEeCCCEEEEEEeccccCCceeeccccceeEEEEccCcccccCceEEEEEEcCCCCEEEEE
Confidence            69999999999999999999999999999998411 1112222222            4455666664322347899999


Q ss_pred             eCCCeEEEEEcCCCCceeEEEEecC--CCCCeeEEEecCCCCCcEEEEEecCCcEEEEEecCCCCeeeeeecccCCCCeE
Q 022111           76 SYDGQVIIWKEGNQNDWTQAHTFND--HKSSVNSIAWAPHELGLSLACGSSDGNISVFTATADGGWDTTRIDQAHPVGVT  153 (302)
Q Consensus        76 s~D~~i~iwd~~~~~~~~~~~~~~~--h~~~i~~l~~~pd~~~~~l~sg~~d~~v~~~~~~~~~~~~~~~~~~~h~~~v~  153 (302)
                      +.|++|++||+++..   ++..+..  |...|.+++|+|+  +.+|++|+.|+.|++||++...  ....+...|...|.
T Consensus       189 ~~d~~i~iwd~~~~~---~~~~~~~~~h~~~v~~~~~s~~--~~~l~s~~~dg~i~iwd~~~~~--~~~~~~~~~~~~v~  261 (437)
T 3gre_A          189 TNLSRVIIFDIRTLE---RLQIIENSPRHGAVSSICIDEE--CCVLILGTTRGIIDIWDIRFNV--LIRSWSFGDHAPIT  261 (437)
T ss_dssp             ETTSEEEEEETTTCC---EEEEEECCGGGCCEEEEEECTT--SCEEEEEETTSCEEEEETTTTE--EEEEEBCTTCEEEE
T ss_pred             eCCCeEEEEeCCCCe---eeEEEccCCCCCceEEEEECCC--CCEEEEEcCCCeEEEEEcCCcc--EEEEEecCCCCceE
Confidence            999999999997753   5666776  8899999999998  6799999999999999997532  22333335677899


Q ss_pred             EEEeCCCCCCCceeecccCCCceeEEEeeCCCcEEEEEEecCccccccc--------------------ccccc--CCCc
Q 022111          154 SVSWAPAMAPGALVGLGLLDPVQKLASCGCDNTVKVWKMYNGIWKMDCF--------------------PALQM--HSDW  211 (302)
Q Consensus       154 ~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~D~~v~iwd~~~~~~~~~~~--------------------~~~~~--h~~~  211 (302)
                      +++|+|...          +++.+|++|+.|+.|++||++++.......                    ..+.+  |...
T Consensus       262 ~~~~~~~~s----------~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~  331 (437)
T 3gre_A          262 HVEVCQFYG----------KNSVIVVGGSSKTFLTIWNFVKGHCQYAFINSDEQPSMEHFLPIEKGLEELNFCGIRSLNA  331 (437)
T ss_dssp             EEEECTTTC----------TTEEEEEEESTTEEEEEEETTTTEEEEEEESSSSCCCGGGGSCBCSSGGGCCCCCCCSGGG
T ss_pred             EEEeccccC----------CCccEEEEEcCCCcEEEEEcCCCcEEEEEEcCCCCCccceecccccccccceecccccCCc
Confidence            999987532          245789999999999999997653110000                    01233  7888


Q ss_pred             eeEEEeeCCCCCCccEEEEEecCCeEEEEEeccCCcceeee----------------------------------eeccC
Q 022111          212 VRSVAWAPNLGLPKSTIASASQDGTVVIWTCAKEGEQWEGR----------------------------------VLKDF  257 (302)
Q Consensus       212 v~~v~~~p~~~~~~~~l~s~s~D~~i~iwd~~~~~~~~~~~----------------------------------~~~~~  257 (302)
                      |.+++|+ ++    .+|++|+.|+.|++||++.........                                  ....|
T Consensus       332 v~~l~~~-~~----~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h  406 (437)
T 3gre_A          332 LSTISVS-ND----KILLTDEATSSIVMFSLNELSSSKAVISPSRFSDVFIPTQVTANLTMLLRKMKRTSTHSVDDSLYH  406 (437)
T ss_dssp             GCCEEEE-TT----EEEEEEGGGTEEEEEETTCGGGCEEEECC--CCCEEEEEEEETTEEEEEEECC-------------
T ss_pred             eEEEEEC-Cc----eEEEecCCCCeEEEEECCCcccceEEecccccCceEEEEEeecceEEEEEecccccccccCccccc
Confidence            9999999 42    789999999999999987542111000                                  00126


Q ss_pred             CCcEEEEEEccC--CCEEEEecCC-ceEEee
Q 022111          258 KTPVWSVSWSLT--GNLLAVADAN-NVTLWK  285 (302)
Q Consensus       258 ~~~v~~~~~spd--g~~la~~~~d-~i~~w~  285 (302)
                      ...|.+++|+++  +.+|++|+.| .|+||+
T Consensus       407 ~~~I~~i~~~~~~~~~~l~s~~~dG~I~iw~  437 (437)
T 3gre_A          407 HDIINSISTCEVDETPLLVACDNSGLIGIFQ  437 (437)
T ss_dssp             CCCEEEEEEEESSSSEEEEEEETTSCEEEEC
T ss_pred             ccceeeEeeeccCCceEEEEEcCCceEEEeC
Confidence            788999999998  7899999998 699995

>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1

Probab=100.00  E-value=1.7e-30  Score=234.49  Aligned_cols=233  Identities=18%  Similarity=0.302  Sum_probs=193.6

Q ss_pred             ccccceeEEEEccCCCEEEEeeCCCcEEEEeecCCCceEEEEecCcccCeEEEEeeCCCCCCEEEEEeCCCeEEEEEcCC
Q 022111            9 GHEDTVHDVAMDFYGKRLATASSDSSIKIIGLSNSASQHLATLKGHRGPVWQVAWAHPKFGSILASCSYDGQVIIWKEGN   88 (302)
Q Consensus         9 ~h~~~v~~~~~s~~~~~l~s~~~d~~v~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~s~D~~i~iwd~~~   88 (302)
                      +|...|+++.+  ++++|++|+.|++|++||+..  .+.+..+.+|.+.|.+++|.    +++|++|+.|++|++||+++
T Consensus       131 ~~~~~v~~~~~--d~~~l~~g~~dg~i~iwd~~~--~~~~~~~~~h~~~v~~l~~~----~~~l~sg~~dg~i~vwd~~~  202 (435)
T 1p22_A          131 ETSKGVYCLQY--DDQKIVSGLRDNTIKIWDKNT--LECKRILTGHTGSVLCLQYD----ERVIITGSSDSTVRVWDVNT  202 (435)
T ss_dssp             SSCCCEEEEEC--CSSEEEEEESSSCEEEEESSS--CCEEEEECCCSSCEEEEECC----SSEEEEEETTSCEEEEESSS
T ss_pred             CCCCcEEEEEE--CCCEEEEEeCCCeEEEEeCCC--CeEEEEEcCCCCcEEEEEEC----CCEEEEEcCCCeEEEEECCC
Confidence            56678887765  789999999999999999865  45677889999999999982    68999999999999999977


Q ss_pred             CCceeEEEEecCCCCCeeEEEecCCCCCcEEEEEecCCcEEEEEecCCCCeeeeeecccCCCCeEEEEeCCCCCCCceee
Q 022111           89 QNDWTQAHTFNDHKSSVNSIAWAPHELGLSLACGSSDGNISVFTATADGGWDTTRIDQAHPVGVTSVSWAPAMAPGALVG  168 (302)
Q Consensus        89 ~~~~~~~~~~~~h~~~i~~l~~~pd~~~~~l~sg~~d~~v~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~  168 (302)
                      +   .....+.+|...|.+++|+++    .+++|+.|+.|++||+.............+|...|.++.|.          
T Consensus       203 ~---~~~~~~~~h~~~v~~l~~~~~----~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~----------  265 (435)
T 1p22_A          203 G---EMLNTLIHHCEAVLHLRFNNG----MMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFD----------  265 (435)
T ss_dssp             C---CEEEEECCCCSCEEEEECCTT----EEEEEETTSCEEEEECSSSSCCEEEEEECCCSSCEEEEEEE----------
T ss_pred             C---cEEEEEcCCCCcEEEEEEcCC----EEEEeeCCCcEEEEeCCCCCCceeeeEecCCCCcEEEEEeC----------
Confidence            6   367788899999999999753    89999999999999997654433323334788899999883          


Q ss_pred             cccCCCceeEEEeeCCCcEEEEEEecCccccccccccccCCCceeEEEeeCCCCCCccEEEEEecCCeEEEEEeccCCcc
Q 022111          169 LGLLDPVQKLASCGCDNTVKVWKMYNGIWKMDCFPALQMHSDWVRSVAWAPNLGLPKSTIASASQDGTVVIWTCAKEGEQ  248 (302)
Q Consensus       169 ~~~~~~~~~l~s~~~D~~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~l~s~s~D~~i~iwd~~~~~~~  248 (302)
                            +..|++|+.|+.|++||+.++    .++..+.+|...|.+++|++      ..|++|+.|+.|++||++.... 
T Consensus       266 ------~~~l~s~~~dg~i~vwd~~~~----~~~~~~~~~~~~v~~~~~~~------~~l~~g~~dg~i~iwd~~~~~~-  328 (435)
T 1p22_A          266 ------DKYIVSASGDRTIKVWNTSTC----EFVRTLNGHKRGIACLQYRD------RLVVSGSSDNTIRLWDIECGAC-  328 (435)
T ss_dssp             ------TTEEEEEETTSEEEEEETTTC----CEEEEEECCSSCEEEEEEET------TEEEEEETTSCEEEEETTTCCE-
T ss_pred             ------CCEEEEEeCCCeEEEEECCcC----cEEEEEcCCCCcEEEEEeCC------CEEEEEeCCCeEEEEECCCCCE-
Confidence                  368999999999999999876    35567789999999999963      5799999999999999986421 


Q ss_pred             eeeeeeccCCCcEEEEEEccCCCEEEEecCC-ceEEeeec
Q 022111          249 WEGRVLKDFKTPVWSVSWSLTGNLLAVADAN-NVTLWKEA  287 (302)
Q Consensus       249 ~~~~~~~~~~~~v~~~~~spdg~~la~~~~d-~i~~w~~~  287 (302)
                        ......|...|.+++|  ++++|++|+.| .|++|+..
T Consensus       329 --~~~~~~h~~~v~~~~~--~~~~l~sg~~dg~i~vwd~~  364 (435)
T 1p22_A          329 --LRVLEGHEELVRCIRF--DNKRIVSGAYDGKIKVWDLV  364 (435)
T ss_dssp             --EEEECCCSSCEEEEEC--CSSEEEEEETTSCEEEEEHH
T ss_pred             --EEEEeCCcCcEEEEEe--cCCEEEEEeCCCcEEEEECC
Confidence              2334678889999999  78899999988 79999974

>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}

Probab=100.00  E-value=5.6e-30  Score=225.15  Aligned_cols=223  Identities=24%  Similarity=0.336  Sum_probs=177.6

Q ss_pred             cccccccceeEEEEccC--CCEEEEeeCCCcEEEEeecCCCceEEEEecCcccCeEEEEeeCCCCCCEEEEEeCCCeEEE
Q 022111            6 IETGHEDTVHDVAMDFY--GKRLATASSDSSIKIIGLSNSASQHLATLKGHRGPVWQVAWAHPKFGSILASCSYDGQVII   83 (302)
Q Consensus         6 ~~~~h~~~v~~~~~s~~--~~~l~s~~~d~~v~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~s~D~~i~i   83 (302)
                      .+.+|...|++++|+++  +++|++|+.|++|++||+.......+..+.+|...|.+++|+++..+++|++++.|+.|++
T Consensus        50 ~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~v  129 (379)
T 3jrp_A           50 TLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSV  129 (379)
T ss_dssp             EECCCSSCEEEEEECCGGGCSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEE
T ss_pred             EecCCCCcEEEEEeCCCCCCCEEEEeccCCEEEEEEcCCCceeEeeeecCCCcceEEEEeCCCCCCCEEEEecCCCcEEE
Confidence            45689999999999977  8999999999999999998754446777888999999999986422689999999999999


Q ss_pred             EEcCCCCceeEEEEecCCCCCeeEEEecCCC-----------CCcEEEEEecCCcEEEEEecCCCCe-eeeeecccCCCC
Q 022111           84 WKEGNQNDWTQAHTFNDHKSSVNSIAWAPHE-----------LGLSLACGSSDGNISVFTATADGGW-DTTRIDQAHPVG  151 (302)
Q Consensus        84 wd~~~~~~~~~~~~~~~h~~~i~~l~~~pd~-----------~~~~l~sg~~d~~v~~~~~~~~~~~-~~~~~~~~h~~~  151 (302)
                      ||++.... .....+..|...|.+++|+|..           ++..+++|+.|+.|++||++..... ........|...
T Consensus       130 ~d~~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~h~~~  208 (379)
T 3jrp_A          130 VEFKENGT-TSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDW  208 (379)
T ss_dssp             EECCTTSC-CCEEEEECCTTCEEEEEECCCC----------CTTCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSC
T ss_pred             EecCCCCc-eeeEEecCCCCceEEEEEcCccccccccccCCCCCCEEEEEeCCCeEEEEEecCCCcceeeEEEEecccCc
Confidence            99976533 2334566799999999999931           2568999999999999999854432 222222378899


Q ss_pred             eEEEEeCCCCCCCceeecccCCCceeEEEeeCCCcEEEEEEecCcccc-ccccccccCCCceeEEEeeCCCCCCccEEEE
Q 022111          152 VTSVSWAPAMAPGALVGLGLLDPVQKLASCGCDNTVKVWKMYNGIWKM-DCFPALQMHSDWVRSVAWAPNLGLPKSTIAS  230 (302)
Q Consensus       152 v~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~D~~v~iwd~~~~~~~~-~~~~~~~~h~~~v~~v~~~p~~~~~~~~l~s  230 (302)
                      |.+++|+|+..           .+.+|++++.|+.|++||+.++.... ........|...|.+++|+|++    .+|++
T Consensus       209 v~~~~~sp~~~-----------~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g----~~l~~  273 (379)
T 3jrp_A          209 VRDVAWSPTVL-----------LRSYLASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSG----NVLAL  273 (379)
T ss_dssp             EEEEEECCCCS-----------SSEEEEEEETTSCEEEEEESSTTSCCEEEESSSSCCSSCEEEEEECSSS----CCEEE
T ss_pred             EeEEEECCCCC-----------CCCeEEEEeCCCEEEEEeCCCCCccceeeeeccccCCCcEEEEEEcCCC----CEEEE
Confidence            99999998620           03789999999999999998753211 1223345688999999999996    67999


Q ss_pred             EecCCeEEEEEecc
Q 022111          231 ASQDGTVVIWTCAK  244 (302)
Q Consensus       231 ~s~D~~i~iwd~~~  244 (302)
                      ++.|+.|++|++..
T Consensus       274 ~~~dg~i~iw~~~~  287 (379)
T 3jrp_A          274 SGGDNKVTLWKENL  287 (379)
T ss_dssp             EESSSSEEEEEEEE
T ss_pred             ecCCCcEEEEeCCC
Confidence            99999999999873

>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.6e-31  Score=233.80  Aligned_cols=240  Identities=13%  Similarity=0.066  Sum_probs=173.7

Q ss_pred             EccCCCEEEEeeCCCcEEEEeecCCCceEEEEecCcccCeEEEEeeCCCCCCEEEEEeCCCeEEEEEcCCCC------ce
Q 022111           19 MDFYGKRLATASSDSSIKIIGLSNSASQHLATLKGHRGPVWQVAWAHPKFGSILASCSYDGQVIIWKEGNQN------DW   92 (302)
Q Consensus        19 ~s~~~~~l~s~~~d~~v~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~s~D~~i~iwd~~~~~------~~   92 (302)
                      +.+++++|++|+.|++|++||+..+.  .+..+.  ...|.++.|.+    . +++++.|+++++|+.....      ..
T Consensus        44 ~~~d~~~l~sg~~Dg~v~iwd~~~~~--~~~~~~--~~~v~~~~~~~----~-~~s~s~D~~i~~w~~~~~~~~~~~~~~  114 (343)
T 3lrv_A           44 MYYDKWVCMCRCEDGALHFTQLKDSK--TITTIT--TPNPRTGGEHP----A-IISRGPCNRLLLLYPGNQITILDSKTN  114 (343)
T ss_dssp             SSEEEEEEEEEEETTEEEEEEESSSS--CEEEEE--EECCCTTCCCC----S-EEEECSTTEEEEEETTTEEEEEETTTC
T ss_pred             hcCCCCEEEEECCCCcEEEEECCCCc--EEEEEe--cCCceeeeeCC----c-eEEecCCCeEEEEEccCceEEeecCCc
Confidence            34567899999999999999997643  344443  45677788753    2 8999999999999865311      11


Q ss_pred             eEEEEe-cCCCCCeeEEEecC--CCCCcEEEEEecCCcEEEEEecCCCCeeeeeecccCCCCeEEEEeCCCCCCCceeec
Q 022111           93 TQAHTF-NDHKSSVNSIAWAP--HELGLSLACGSSDGNISVFTATADGGWDTTRIDQAHPVGVTSVSWAPAMAPGALVGL  169 (302)
Q Consensus        93 ~~~~~~-~~h~~~i~~l~~~p--d~~~~~l~sg~~d~~v~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~  169 (302)
                      ..+..+ ..|.++|.+++|+|  +  +.++++|+.|++|++||++....  .......|...+.+++|+|++        
T Consensus       115 ~~~~~~~~~~~~~v~~~~~~~~~~--~~~l~s~s~dg~i~~wd~~~~~~--~~~~~~~~~~~i~~~~~~pdg--------  182 (343)
T 3lrv_A          115 KVLREIEVDSANEIIYMYGHNEVN--TEYFIWADNRGTIGFQSYEDDSQ--YIVHSAKSDVEYSSGVLHKDS--------  182 (343)
T ss_dssp             CEEEEEECCCSSCEEEEECCC-----CCEEEEEETTCCEEEEESSSSCE--EEEECCCSSCCCCEEEECTTS--------
T ss_pred             ceeEEeecCCCCCEEEEEcCCCCC--CCEEEEEeCCCcEEEEECCCCcE--EEEEecCCCCceEEEEECCCC--------
Confidence            112222 25778999999999  6  67999999999999999975533  222222455679999999864        


Q ss_pred             ccCCCceeEEEeeCCCcEEEEEEecCccccccc-ccccc-CCCceeEEEeeCCCCCCccEEEEEecCCeEEEEEeccCCc
Q 022111          170 GLLDPVQKLASCGCDNTVKVWKMYNGIWKMDCF-PALQM-HSDWVRSVAWAPNLGLPKSTIASASQDGTVVIWTCAKEGE  247 (302)
Q Consensus       170 ~~~~~~~~l~s~~~D~~v~iwd~~~~~~~~~~~-~~~~~-h~~~v~~v~~~p~~~~~~~~l~s~s~D~~i~iwd~~~~~~  247 (302)
                            .+|++|+.|+.|+|||++++.    .. ..+.+ |.+.|.+++|+|++    .+|+++++| .|++||++....
T Consensus       183 ------~~lasg~~dg~i~iwd~~~~~----~~~~~~~~~h~~~v~~l~fs~~g----~~l~s~~~~-~v~iwd~~~~~~  247 (343)
T 3lrv_A          183 ------LLLALYSPDGILDVYNLSSPD----QASSRFPVDEEAKIKEVKFADNG----YWMVVECDQ-TVVCFDLRKDVG  247 (343)
T ss_dssp             ------CEEEEECTTSCEEEEESSCTT----SCCEECCCCTTSCEEEEEECTTS----SEEEEEESS-BEEEEETTSSTT
T ss_pred             ------CEEEEEcCCCEEEEEECCCCC----CCccEEeccCCCCEEEEEEeCCC----CEEEEEeCC-eEEEEEcCCCCc
Confidence                  789999999999999998763    22 45666 99999999999985    789999955 999999986532


Q ss_pred             ceeeeeeccCCCcE--EEEEEccCCCEEEEecC-C-ceEEeeecC-CceEEE
Q 022111          248 QWEGRVLKDFKTPV--WSVSWSLTGNLLAVADA-N-NVTLWKEAV-DGEWQQ  294 (302)
Q Consensus       248 ~~~~~~~~~~~~~v--~~~~~spdg~~la~~~~-d-~i~~w~~~~-~~~~~~  294 (302)
                      .........+..++  .+++|+|+|++|++++. + .+++|+... .+.|+.
T Consensus       248 ~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~s~~d~~i~v~~~~~~~~~~~~  299 (343)
T 3lrv_A          248 TLAYPTYTIPEFKTGTVTYDIDDSGKNMIAYSNESNSLTIYKFDKKTKNWTK  299 (343)
T ss_dssp             CBSSCCCBC-----CCEEEEECTTSSEEEEEETTTTEEEEEEECTTTCSEEE
T ss_pred             ceeecccccccccccceEEEECCCCCEEEEecCCCCcEEEEEEcccccceEe
Confidence            21111111122333  36999999999999766 5 799999844 344776

>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}

Probab=100.00  E-value=2e-30  Score=235.10  Aligned_cols=258  Identities=12%  Similarity=0.052  Sum_probs=190.1

Q ss_pred             ccceeEEEEccCCCEEEEeeCCCcEEEEeecCCC-ceEEEEec-------------------------------------
Q 022111           11 EDTVHDVAMDFYGKRLATASSDSSIKIIGLSNSA-SQHLATLK-------------------------------------   52 (302)
Q Consensus        11 ~~~v~~~~~s~~~~~l~s~~~d~~v~lw~~~~~~-~~~~~~~~-------------------------------------   52 (302)
                      ..++.+++|+++|++|+++ .++.|++||+..+. .+.+..+.                                     
T Consensus         4 ~~p~~~v~~s~dg~~l~~~-~~~~i~v~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (450)
T 2vdu_B            4 IHPLQNLLTSRDGSLVFAI-IKNCILSFKYQSPNHWEFAGKWSDDFDKIQESRNTTAKEQQGQSSENENENKKLKSNKGD   82 (450)
T ss_dssp             ECCCCEEEECSSSSEEEEE-ETTEEEEEEEETTTEEEEEEEEECCC----------------------------------
T ss_pred             cccEEEEEecCCCCEEEEE-eCCeEEEEECCCCCcceeeeecCCccccccccccccchhhccccccccccccccccCcCc
Confidence            3578899999999966655 58899999986543 00222222                                     


Q ss_pred             -----------------CcccCeEEEEeeCCCCCCEE-EEEeCCCeEEEEEcC--CCCceeEEEEec--CCCCCeeEEEe
Q 022111           53 -----------------GHRGPVWQVAWAHPKFGSIL-ASCSYDGQVIIWKEG--NQNDWTQAHTFN--DHKSSVNSIAW  110 (302)
Q Consensus        53 -----------------~h~~~v~~v~~~~~~~~~~l-~s~s~D~~i~iwd~~--~~~~~~~~~~~~--~h~~~i~~l~~  110 (302)
                                       +|.+.|++++|+++  +++| ++++.|++|++||+.  ++.   ....+.  .|...|.+++|
T Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d--~~~l~~~~~~dg~v~iwd~~~~~~~---~~~~~~~~~~~~~v~~~~~  157 (450)
T 2vdu_B           83 SIKRTAAKVPSPGLGAPPIYSYIRNLRLTSD--ESRLIACADSDKSLLVFDVDKTSKN---VLKLRKRFCFSKRPNAISI  157 (450)
T ss_dssp             -----------------CCCCCEEEEEECTT--SSEEEEEEGGGTEEEEEEECSSSSS---CEEEEEEEECSSCEEEEEE
T ss_pred             cccccCccccCCCCCCCccCCceEEEEEcCC--CCEEEEEECCCCeEEEEECcCCCCc---eeeeeecccCCCCceEEEE
Confidence                             34557999999874  7775 899999999999997  543   334443  47789999999


Q ss_pred             cCCCCCcEEEEEecCCcEEEEEecCCCCee-eeeecccCCCCeEEEEeCCCCCCCceeecccCCCceeEEEeeCCCcEEE
Q 022111          111 APHELGLSLACGSSDGNISVFTATADGGWD-TTRIDQAHPVGVTSVSWAPAMAPGALVGLGLLDPVQKLASCGCDNTVKV  189 (302)
Q Consensus       111 ~pd~~~~~l~sg~~d~~v~~~~~~~~~~~~-~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~D~~v~i  189 (302)
                      +|+  +.+|++|+.++.+++|++....... ......+|...|.+++|+|+..           .+.+|++|+.|+.|++
T Consensus       158 sp~--~~~l~~~~~~g~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~-----------~~~~l~s~~~d~~i~v  224 (450)
T 2vdu_B          158 AED--DTTVIIADKFGDVYSIDINSIPEEKFTQEPILGHVSMLTDVHLIKDSD-----------GHQFIITSDRDEHIKI  224 (450)
T ss_dssp             CTT--SSEEEEEETTSEEEEEETTSCCCSSCCCCCSEECSSCEEEEEEEECTT-----------SCEEEEEEETTSCEEE
T ss_pred             cCC--CCEEEEEeCCCcEEEEecCCcccccccceeeecccCceEEEEEcCCCC-----------CCcEEEEEcCCCcEEE
Confidence            998  6799999999999999986543221 1112236888999999999610           1378999999999999


Q ss_pred             EEEecCccccccccc-cccCCCceeEEEeeCCCCCCccEEEEEecCCeEEEEEeccCCcceeeeee--------------
Q 022111          190 WKMYNGIWKMDCFPA-LQMHSDWVRSVAWAPNLGLPKSTIASASQDGTVVIWTCAKEGEQWEGRVL--------------  254 (302)
Q Consensus       190 wd~~~~~~~~~~~~~-~~~h~~~v~~v~~~p~~~~~~~~l~s~s~D~~i~iwd~~~~~~~~~~~~~--------------  254 (302)
                      ||+.++.    ++.. +.+|...|.+++|+ ++    .+|++++.|+.|++||++...........              
T Consensus       225 wd~~~~~----~~~~~~~~h~~~v~~~~~s-d~----~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~  295 (450)
T 2vdu_B          225 SHYPQCF----IVDKWLFGHKHFVSSICCG-KD----YLLLSAGGDDKIFAWDWKTGKNLSTFDYNSLIKPYLNDQHLAP  295 (450)
T ss_dssp             EEESCTT----CEEEECCCCSSCEEEEEEC-ST----TEEEEEESSSEEEEEETTTCCEEEEEECHHHHGGGCCTTSBC-
T ss_pred             EECCCCc----eeeeeecCCCCceEEEEEC-CC----CEEEEEeCCCeEEEEECCCCcEeeeecchhhhhhhhhhccccc
Confidence            9998763    3334 56899999999999 74    78999999999999999764321110100              


Q ss_pred             --------ccCCCcEEEEEEccCCCEEEEec-CC-ceEEeee--cCCceEEEee
Q 022111          255 --------KDFKTPVWSVSWSLTGNLLAVAD-AN-NVTLWKE--AVDGEWQQVS  296 (302)
Q Consensus       255 --------~~~~~~v~~~~~spdg~~la~~~-~d-~i~~w~~--~~~~~~~~~~  296 (302)
                              ......|.+++|+|++++|++++ .+ .|++|+.  ...+.+....
T Consensus       296 ~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~~d~~i~iw~~~~~~~~~l~~~~  349 (450)
T 2vdu_B          296 PRFQNENNDIIEFAVSKIIKSKNLPFVAFFVEATKCIIILEMSEKQKGDLALKQ  349 (450)
T ss_dssp             ---------CBCCCEEEEEECSSSSEEEEEETTCSEEEEEEECSSSTTCEEEEE
T ss_pred             ccccccccccceEEEEEEEEeCCCCEEEEEECCCCeEEEEEeccCCCCceeecc
Confidence                    02234689999999999999987 55 7999999  5454555443

>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A

Probab=100.00  E-value=1e-30  Score=244.48  Aligned_cols=252  Identities=14%  Similarity=0.229  Sum_probs=202.8

Q ss_pred             cccccceeEEEEccCCCEEEEeeCCCcEEEEeecCCC--ceEEEEecCcccC-eEEEEeeCCCCCCEEEEEeCCCeEEEE
Q 022111            8 TGHEDTVHDVAMDFYGKRLATASSDSSIKIIGLSNSA--SQHLATLKGHRGP-VWQVAWAHPKFGSILASCSYDGQVIIW   84 (302)
Q Consensus         8 ~~h~~~v~~~~~s~~~~~l~s~~~d~~v~lw~~~~~~--~~~~~~~~~h~~~-v~~v~~~~~~~~~~l~s~s~D~~i~iw   84 (302)
                      ..|.+.|++++|+|++++||+++ ++.|++|++....  .+....+.+|... |.+++|++-.++++|++++.|++|++|
T Consensus        15 ~~~~~~v~~~~~spdg~~l~~~~-~~~v~v~~~~~~~~~~~~~~~~~~h~~~~v~~~~~sp~~~~~~l~s~~~dg~v~vw   93 (615)
T 1pgu_A           15 STQRNFTTHLSYDPTTNAIAYPC-GKSAFVRCLDDGDSKVPPVVQFTGHGSSVVTTVKFSPIKGSQYLCSGDESGKVIVW   93 (615)
T ss_dssp             CCCTTCCCCCEEETTTTEEEEEE-TTEEEEEECCSSCCSSCSEEEECTTTTSCEEEEEECSSTTCCEEEEEETTSEEEEE
T ss_pred             CCccCceeEEEECCCCCEEEEec-CCeEEEEECCCCCCccccceEEecCCCceEEEEEECcCCCCCEEEEecCCCEEEEE
Confidence            36889999999999999999988 8899999987530  1456788999999 999999871137899999999999999


Q ss_pred             EcCCCC-----ceeEEEEecCCCCCeeEEEecCCCCCcEEEEEecC----CcEEEEEecCCCCeeeeeecccCCCCeEEE
Q 022111           85 KEGNQN-----DWTQAHTFNDHKSSVNSIAWAPHELGLSLACGSSD----GNISVFTATADGGWDTTRIDQAHPVGVTSV  155 (302)
Q Consensus        85 d~~~~~-----~~~~~~~~~~h~~~i~~l~~~pd~~~~~l~sg~~d----~~v~~~~~~~~~~~~~~~~~~~h~~~v~~~  155 (302)
                      |+.++.     .......+..|...|.+++|+|+  +.+|++++.+    +.|.+|+..  .  ....+ ..|...|.++
T Consensus        94 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~--~~~l~~~~~~~~~~~~v~~~d~~--~--~~~~~-~~~~~~v~~~  166 (615)
T 1pgu_A           94 GWTFDKESNSVEVNVKSEFQVLAGPISDISWDFE--GRRLCVVGEGRDNFGVFISWDSG--N--SLGEV-SGHSQRINAC  166 (615)
T ss_dssp             EEEEEGGGTEEEEEEEEEEECCSSCEEEEEECTT--SSEEEEEECCSSCSEEEEETTTC--C--EEEEC-CSCSSCEEEE
T ss_pred             eCCCCcccccccccccchhhcccccEEEEEEeCC--CCEEEEeccCCCCccEEEEEECC--C--cceee-ecCCccEEEE
Confidence            985320     12456678889999999999998  6689999888    688888732  1  22333 3789999999


Q ss_pred             EeCCCCCCCceeecccCCCceeEEEeeCCCcEEEEEEecCccccccccccccCCC---ceeEEEeeCC-CCCCccEEEEE
Q 022111          156 SWAPAMAPGALVGLGLLDPVQKLASCGCDNTVKVWKMYNGIWKMDCFPALQMHSD---WVRSVAWAPN-LGLPKSTIASA  231 (302)
Q Consensus       156 ~~~~~~~~~~~~~~~~~~~~~~l~s~~~D~~v~iwd~~~~~~~~~~~~~~~~h~~---~v~~v~~~p~-~~~~~~~l~s~  231 (302)
                      .|+|++             ...|++++.|+.|++||+.+.    .+...+.+|..   .|.+++|+|+ +    ++|+++
T Consensus       167 ~~~~~~-------------~~~l~~~~~d~~v~vwd~~~~----~~~~~~~~~~~~~~~v~~~~~~~~~~----~~l~~~  225 (615)
T 1pgu_A          167 HLKQSR-------------PMRSMTVGDDGSVVFYQGPPF----KFSASDRTHHKQGSFVRDVEFSPDSG----EFVITV  225 (615)
T ss_dssp             EECSSS-------------SCEEEEEETTTEEEEEETTTB----EEEEEECSSSCTTCCEEEEEECSTTC----CEEEEE
T ss_pred             EECCCC-------------CcEEEEEeCCCcEEEEeCCCc----ceeeeecccCCCCceEEEEEECCCCC----CEEEEE
Confidence            999864             237999999999999998765    34566788998   9999999998 5    789999


Q ss_pred             ecCCeEEEEEeccCCcceeeeeec---cCCCcEEEEEEccCCCEEEEecCC-ceEEeeecCCce
Q 022111          232 SQDGTVVIWTCAKEGEQWEGRVLK---DFKTPVWSVSWSLTGNLLAVADAN-NVTLWKEAVDGE  291 (302)
Q Consensus       232 s~D~~i~iwd~~~~~~~~~~~~~~---~~~~~v~~~~~spdg~~la~~~~d-~i~~w~~~~~~~  291 (302)
                      +.|+.|++||++....  ...+..   .+..+|.+++|+ ++++|++++.| .|++|+......
T Consensus       226 ~~dg~i~vwd~~~~~~--~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~d~~i~~wd~~~~~~  286 (615)
T 1pgu_A          226 GSDRKISCFDGKSGEF--LKYIEDDQEPVQGGIFALSWL-DSQKFATVGADATIRVWDVTTSKC  286 (615)
T ss_dssp             ETTCCEEEEETTTCCE--EEECCBTTBCCCSCEEEEEES-SSSEEEEEETTSEEEEEETTTTEE
T ss_pred             eCCCeEEEEECCCCCE--eEEecccccccCCceEEEEEc-CCCEEEEEcCCCcEEEEECCCCcE
Confidence            9999999999876432  112213   678899999999 99999999988 799999864433

>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A

Probab=100.00  E-value=4.5e-31  Score=233.27  Aligned_cols=205  Identities=17%  Similarity=0.142  Sum_probs=159.3

Q ss_pred             ccccceeEEEEccCCCEEE--EeeCCCcEEEEeecCCCceEEEEecCcccCeEEEEeeCCCCCCEEEEEeCCCeEEEEEc
Q 022111            9 GHEDTVHDVAMDFYGKRLA--TASSDSSIKIIGLSNSASQHLATLKGHRGPVWQVAWAHPKFGSILASCSYDGQVIIWKE   86 (302)
Q Consensus         9 ~h~~~v~~~~~s~~~~~l~--s~~~d~~v~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~s~D~~i~iwd~   86 (302)
                      .++..+..++|||||++||  +++.|++|+|||+..  .+.+..+. |.+.|++|+|+|+  |++|++++.|+ +++|+.
T Consensus       131 ~~~~~~~~v~fSpDg~~la~as~~~d~~i~iwd~~~--~~~~~~~~-~~~~V~~v~fspd--g~~l~s~s~~~-~~~~~~  204 (365)
T 4h5i_A          131 NADDYTKLVYISREGTVAAIASSKVPAIMRIIDPSD--LTEKFEIE-TRGEVKDLHFSTD--GKVVAYITGSS-LEVIST  204 (365)
T ss_dssp             CTTCCEEEEEECTTSSCEEEEESCSSCEEEEEETTT--TEEEEEEE-CSSCCCEEEECTT--SSEEEEECSSC-EEEEET
T ss_pred             CcccCEEEEEEcCCCCEEEEEECCCCCEEEEeECCC--CcEEEEeC-CCCceEEEEEccC--CceEEecccee-EEEEEe
Confidence            3556788999999999876  455899999999865  44556664 7788999999874  89999998665 555555


Q ss_pred             CCCCceeEEEEecCCCCCeeEEEecCCCCCcEEEEEecCC----cEEEEEecCCCCee--eeeecccCCCCeEEEEeCCC
Q 022111           87 GNQNDWTQAHTFNDHKSSVNSIAWAPHELGLSLACGSSDG----NISVFTATADGGWD--TTRIDQAHPVGVTSVSWAPA  160 (302)
Q Consensus        87 ~~~~~~~~~~~~~~h~~~i~~l~~~pd~~~~~l~sg~~d~----~v~~~~~~~~~~~~--~~~~~~~h~~~v~~~~~~~~  160 (302)
                      .++.. ........|...|.+++|+|+  +..+++++.|+    .+++|+........  ...+ ..|...|++++|+|+
T Consensus       205 ~~~~~-~~~~~~~~~~~~v~~v~fspd--g~~l~~~s~d~~~~~~i~~~~~~~~~~~~~~~~~~-~~~~~~V~~~~~Spd  280 (365)
T 4h5i_A          205 VTGSC-IARKTDFDKNWSLSKINFIAD--DTVLIAASLKKGKGIVLTKISIKSGNTSVLRSKQV-TNRFKGITSMDVDMK  280 (365)
T ss_dssp             TTCCE-EEEECCCCTTEEEEEEEEEET--TEEEEEEEESSSCCEEEEEEEEETTEEEEEEEEEE-ESSCSCEEEEEECTT
T ss_pred             ccCcc-eeeeecCCCCCCEEEEEEcCC--CCEEEEEecCCcceeEEeecccccceecceeeeee-cCCCCCeEeEEECCC
Confidence            44321 223345678999999999998  67899998887    57778876432111  1223 368889999999996


Q ss_pred             CCCCceeecccCCCceeEEEeeCCCcEEEEEEecCccccccccc-cccCCCceeEEEeeCCCCCCccEEEEEecCCeEEE
Q 022111          161 MAPGALVGLGLLDPVQKLASCGCDNTVKVWKMYNGIWKMDCFPA-LQMHSDWVRSVAWAPNLGLPKSTIASASQDGTVVI  239 (302)
Q Consensus       161 ~~~~~~~~~~~~~~~~~l~s~~~D~~v~iwd~~~~~~~~~~~~~-~~~h~~~v~~v~~~p~~~~~~~~l~s~s~D~~i~i  239 (302)
                                    +++||+|+.|++|+|||+.++    .++.. +.+|...|++|+|+||+    ++|||||.|++|||
T Consensus       281 --------------g~~lasgs~D~~V~iwd~~~~----~~~~~~~~gH~~~V~~v~fSpdg----~~laS~S~D~tvrv  338 (365)
T 4h5i_A          281 --------------GELAVLASNDNSIALVKLKDL----SMSKIFKQAHSFAITEVTISPDS----TYVASVSAANTIHI  338 (365)
T ss_dssp             --------------SCEEEEEETTSCEEEEETTTT----EEEEEETTSSSSCEEEEEECTTS----CEEEEEETTSEEEE
T ss_pred             --------------CCceEEEcCCCEEEEEECCCC----cEEEEecCcccCCEEEEEECCCC----CEEEEEeCCCeEEE
Confidence                          489999999999999999876    34444 47899999999999995    88999999999999


Q ss_pred             EEeccC
Q 022111          240 WTCAKE  245 (302)
Q Consensus       240 wd~~~~  245 (302)
                      ||+...
T Consensus       339 w~ip~~  344 (365)
T 4h5i_A          339 IKLPLN  344 (365)
T ss_dssp             EECCTT
T ss_pred             EEcCCC
Confidence            998643

>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}

Probab=100.00  E-value=6.5e-31  Score=256.90  Aligned_cols=245  Identities=16%  Similarity=0.186  Sum_probs=187.0

Q ss_pred             ccccccceeEEEEccCCCEEEEeeCCCcEEEEeecCCCceEEEEecCcccCeEEEEeeCCCCCCEEEEEeCCCeEEEEEc
Q 022111            7 ETGHEDTVHDVAMDFYGKRLATASSDSSIKIIGLSNSASQHLATLKGHRGPVWQVAWAHPKFGSILASCSYDGQVIIWKE   86 (302)
Q Consensus         7 ~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~s~D~~i~iwd~   86 (302)
                      ..||.+.|++++|+|++++||+|+.|++|+||+...  .+....+ .|...|.+++|++   +++|++++.|++|++||+
T Consensus        13 ~~gh~~~V~~lafspdg~~lAsgs~Dg~I~lw~~~~--~~~~~~~-~~~~~V~~l~fsp---g~~L~S~s~D~~v~lWd~   86 (902)
T 2oaj_A           13 KYGMSSKPIAAAFDFTQNLLAIATVTGEVHIYGQQQ--VEVVIKL-EDRSAIKEMRFVK---GIYLVVINAKDTVYVLSL   86 (902)
T ss_dssp             EEECSSCEEEEEEETTTTEEEEEETTSEEEEECSTT--CEEEEEC-SSCCCEEEEEEET---TTEEEEEETTCEEEEEET
T ss_pred             ccCCCCCcEEEEECCCCCEEEEEeCCCEEEEEeCCC--cEEEEEc-CCCCCEEEEEEcC---CCEEEEEECcCeEEEEEC
Confidence            448999999999999999999999999999999754  3333333 5888999999986   569999999999999999


Q ss_pred             CCCCceeEEEEecCCCCCeeEEEecCCCCCcEEEEEecCCcEEEEEecCCCCeeee--------eecccCCCCeEEEEeC
Q 022111           87 GNQNDWTQAHTFNDHKSSVNSIAWAPHELGLSLACGSSDGNISVFTATADGGWDTT--------RIDQAHPVGVTSVSWA  158 (302)
Q Consensus        87 ~~~~~~~~~~~~~~h~~~i~~l~~~pd~~~~~l~sg~~d~~v~~~~~~~~~~~~~~--------~~~~~h~~~v~~~~~~  158 (302)
                      +++.   ++.++. |...|++++|+|+  +.+|++|+.|++|++||+.........        ....+|...|.+++|+
T Consensus        87 ~~~~---~~~~~~-~~~~V~~v~~sp~--g~~l~sgs~dg~V~lwd~~~~~~~~~~i~~~~~~~~~~~~h~~~V~sl~~s  160 (902)
T 2oaj_A           87 YSQK---VLTTVF-VPGKITSIDTDAS--LDWMLIGLQNGSMIVYDIDRDQLSSFKLDNLQKSSFFPAARLSPIVSIQWN  160 (902)
T ss_dssp             TTCS---EEEEEE-CSSCEEEEECCTT--CSEEEEEETTSCEEEEETTTTEEEEEEECCHHHHHTCSSSCCCCCCEEEEE
T ss_pred             CCCc---EEEEEc-CCCCEEEEEECCC--CCEEEEEcCCCcEEEEECCCCccccceeccccccccccccCCCCeEEEEEc
Confidence            7753   455565 6789999999998  679999999999999998753211000        1123688899999999


Q ss_pred             CCCCCCceeecccCCCceeEEEeeCCCcEEEEEEecCcccccccccc------------------ccCCCceeEEEeeCC
Q 022111          159 PAMAPGALVGLGLLDPVQKLASCGCDNTVKVWKMYNGIWKMDCFPAL------------------QMHSDWVRSVAWAPN  220 (302)
Q Consensus       159 ~~~~~~~~~~~~~~~~~~~l~s~~~D~~v~iwd~~~~~~~~~~~~~~------------------~~h~~~v~~v~~~p~  220 (302)
                      |+.             +..|++|+.|+.| +||++++.    ++..+                  ..|...|++++|+|+
T Consensus       161 p~~-------------~~~l~~g~~dg~v-lWd~~~~~----~~~~~~~~~~~g~~~~~~~~~~~~~h~~~V~~v~fspd  222 (902)
T 2oaj_A          161 PRD-------------IGTVLISYEYVTL-TYSLVENE----IKQSFIYELPPFAPGGDFSEKTNEKRTPKVIQSLYHPN  222 (902)
T ss_dssp             TTE-------------EEEEEEECSSCEE-EEETTTTE----EEEEECCCBCTTCCCSTTCCCTTSCBCCCEEEEEECTT
T ss_pred             cCC-------------CCEEEEEeCCCcE-EEECCCCc----eEEEEecccCCcCCCcccccccccccCCCeEEEEEcCC
Confidence            853             3689999999999 99998753    22223                  235688999999999


Q ss_pred             CCCCccEEEEEecCCeEEEEEeccCCcceeeeee-----c-----------cCCCcEEEEEEc----cCC-CEEEEecCC
Q 022111          221 LGLPKSTIASASQDGTVVIWTCAKEGEQWEGRVL-----K-----------DFKTPVWSVSWS----LTG-NLLAVADAN  279 (302)
Q Consensus       221 ~~~~~~~l~s~s~D~~i~iwd~~~~~~~~~~~~~-----~-----------~~~~~v~~~~~s----pdg-~~la~~~~d  279 (302)
                      +    .+|++++.|++|++||++..... ..+.+     .           .+..+|.+++|+    |++ .+|++++.+
T Consensus       223 g----~~lasgs~Dg~i~lWd~~~g~~~-~~r~l~~~~~~~~~~~~~~~~~~~~~~V~~v~w~~~~~pd~~~ll~sg~~~  297 (902)
T 2oaj_A          223 S----LHIITIHEDNSLVFWDANSGHMI-MARTVFETEINVPQPDYIRDSSTNAAKISKVYWMCENNPEYTSLLISHKSI  297 (902)
T ss_dssp             S----SEEEEEETTCCEEEEETTTCCEE-EEECSSCSCTTSCCTTCCCCCSSCCCEEEEEEEEECSSTTEEEEEEEEECS
T ss_pred             C----CEEEEEECCCeEEEEECCCCcEE-EEEeecccccCCCCCcCCCCCccccCCeeEEEEEecCCCCCCEEEEeCCCC
Confidence            5    78999999999999999764211 11111     0           124479999995    444 566777544


Q ss_pred             ------ceEEeee
Q 022111          280 ------NVTLWKE  286 (302)
Q Consensus       280 ------~i~~w~~  286 (302)
                            .+++|+.
T Consensus       298 ~~~~~~~v~~~~~  310 (902)
T 2oaj_A          298 SRGDNQSLTMIDL  310 (902)
T ss_dssp             TTSSCCCEEEEEE
T ss_pred             CCCCCceEEEEec
Confidence                  5788874

>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}

Probab=100.00  E-value=5.9e-30  Score=231.92  Aligned_cols=258  Identities=13%  Similarity=0.071  Sum_probs=191.2

Q ss_pred             cccccceeEEEEccCCCEE-EEeeCCCcEEEEeecCCCceEEEEec--CcccCeEEEEeeCCCCCCEEEEEeCCCeEEEE
Q 022111            8 TGHEDTVHDVAMDFYGKRL-ATASSDSSIKIIGLSNSASQHLATLK--GHRGPVWQVAWAHPKFGSILASCSYDGQVIIW   84 (302)
Q Consensus         8 ~~h~~~v~~~~~s~~~~~l-~s~~~d~~v~lw~~~~~~~~~~~~~~--~h~~~v~~v~~~~~~~~~~l~s~s~D~~i~iw   84 (302)
                      .+|.+.|++++|+|++++| ++++.|++|+||++.......+..+.  .|...|.+++|+++  +++|++++.|+.+.+|
T Consensus        99 ~~~~~~v~~~~~s~d~~~l~~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp~--~~~l~~~~~~g~v~~~  176 (450)
T 2vdu_B           99 PPIYSYIRNLRLTSDESRLIACADSDKSLLVFDVDKTSKNVLKLRKRFCFSKRPNAISIAED--DTTVIIADKFGDVYSI  176 (450)
T ss_dssp             -CCCCCEEEEEECTTSSEEEEEEGGGTEEEEEEECSSSSSCEEEEEEEECSSCEEEEEECTT--SSEEEEEETTSEEEEE
T ss_pred             CccCCceEEEEEcCCCCEEEEEECCCCeEEEEECcCCCCceeeeeecccCCCCceEEEEcCC--CCEEEEEeCCCcEEEE
Confidence            3677789999999999996 89999999999999721233444554  56788999999864  7899999999999999


Q ss_pred             EcCCCCcee-EEEEecCCCCCeeEEEecCC-CCCcEEEEEecCCcEEEEEecCCCCeeeeeecccCCCCeEEEEeCCCCC
Q 022111           85 KEGNQNDWT-QAHTFNDHKSSVNSIAWAPH-ELGLSLACGSSDGNISVFTATADGGWDTTRIDQAHPVGVTSVSWAPAMA  162 (302)
Q Consensus        85 d~~~~~~~~-~~~~~~~h~~~i~~l~~~pd-~~~~~l~sg~~d~~v~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~  162 (302)
                      ++.+..... +...+.+|...|.+++|+|+ ..+.+|++|+.|+.|++||+......  ..+..+|...|.+++|+ +  
T Consensus       177 ~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~d~~i~vwd~~~~~~~--~~~~~~h~~~v~~~~~s-d--  251 (450)
T 2vdu_B          177 DINSIPEEKFTQEPILGHVSMLTDVHLIKDSDGHQFIITSDRDEHIKISHYPQCFIV--DKWLFGHKHFVSSICCG-K--  251 (450)
T ss_dssp             ETTSCCCSSCCCCCSEECSSCEEEEEEEECTTSCEEEEEEETTSCEEEEEESCTTCE--EEECCCCSSCEEEEEEC-S--
T ss_pred             ecCCcccccccceeeecccCceEEEEEcCCCCCCcEEEEEcCCCcEEEEECCCCcee--eeeecCCCCceEEEEEC-C--
Confidence            987654322 33366779999999999997 33568999999999999999754322  22234788999999998 5  


Q ss_pred             CCceeecccCCCceeEEEeeCCCcEEEEEEecCccccccccccc-------------------------cCCCceeEEEe
Q 022111          163 PGALVGLGLLDPVQKLASCGCDNTVKVWKMYNGIWKMDCFPALQ-------------------------MHSDWVRSVAW  217 (302)
Q Consensus       163 ~~~~~~~~~~~~~~~l~s~~~D~~v~iwd~~~~~~~~~~~~~~~-------------------------~h~~~v~~v~~  217 (302)
                                  +.+|++++.|+.|+|||+.++..    +..+.                         .+...|.+++|
T Consensus       252 ------------~~~l~s~~~d~~v~vwd~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~  315 (450)
T 2vdu_B          252 ------------DYLLLSAGGDDKIFAWDWKTGKN----LSTFDYNSLIKPYLNDQHLAPPRFQNENNDIIEFAVSKIIK  315 (450)
T ss_dssp             ------------TTEEEEEESSSEEEEEETTTCCE----EEEEECHHHHGGGCCTTSBC----------CBCCCEEEEEE
T ss_pred             ------------CCEEEEEeCCCeEEEEECCCCcE----eeeecchhhhhhhhhhcccccccccccccccceEEEEEEEE
Confidence                        37899999999999999987632    11111                         23457999999


Q ss_pred             eCCCCCCccEEEEEe-cCCeEEEEEe--ccCCcceeeeeeccCCCcEEEEEEccCCCEEEEecC------C-ceEEeeec
Q 022111          218 APNLGLPKSTIASAS-QDGTVVIWTC--AKEGEQWEGRVLKDFKTPVWSVSWSLTGNLLAVADA------N-NVTLWKEA  287 (302)
Q Consensus       218 ~p~~~~~~~~l~s~s-~D~~i~iwd~--~~~~~~~~~~~~~~~~~~v~~~~~spdg~~la~~~~------d-~i~~w~~~  287 (302)
                      +|++    .+|++++ .|+.|+||++  ...........+..+ ..|++++|+|++.++++++.      + .|.+|...
T Consensus       316 ~~~~----~~l~~~~~~d~~i~iw~~~~~~~~~l~~~~~~~~~-~~v~~~~~~~~~~~v~~~~~~~~~~~~~~i~v~~~~  390 (450)
T 2vdu_B          316 SKNL----PFVAFFVEATKCIIILEMSEKQKGDLALKQIITFP-YNVISLSAHNDEFQVTLDNKESSGVQKNFAKFIEYN  390 (450)
T ss_dssp             CSSS----SEEEEEETTCSEEEEEEECSSSTTCEEEEEEEECS-SCEEEEEEETTEEEEEECCTTCCSSCCCSEEEEEEE
T ss_pred             eCCC----CEEEEEECCCCeEEEEEeccCCCCceeeccEeccC-CceEEEEecCCcEEEEEecccCCCCCCcceEEEEEE
Confidence            9985    7788888 8999999999  322111111222333 78999999996544444442      2 48999874


Q ss_pred             -CCceEE
Q 022111          288 -VDGEWQ  293 (302)
Q Consensus       288 -~~~~~~  293 (302)
                       ..+.|.
T Consensus       391 ~~~~~~~  397 (450)
T 2vdu_B          391 LNENSFV  397 (450)
T ss_dssp             TTTTEEE
T ss_pred             cCCCeEE
Confidence             356664

>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A

Probab=99.98  E-value=2.7e-29  Score=225.62  Aligned_cols=245  Identities=24%  Similarity=0.383  Sum_probs=191.5

Q ss_pred             ceeEEEEccCCCEEEEeeCCCcEEEEeecCCCceEEEEecCcccCeEEEEeeCCCCCCEEEEEeCCCeEEEEEcCCCCce
Q 022111           13 TVHDVAMDFYGKRLATASSDSSIKIIGLSNSASQHLATLKGHRGPVWQVAWAHPKFGSILASCSYDGQVIIWKEGNQNDW   92 (302)
Q Consensus        13 ~v~~~~~s~~~~~l~s~~~d~~v~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~s~D~~i~iwd~~~~~~~   92 (302)
                      .++.|+||+++ .||+| .|++|+|||..++....+..+.+|...|++|+|+++  |++||+|+.|++|+|||++++   
T Consensus       107 y~~~l~wS~~n-~lAvg-ld~tV~lWd~~tg~~~~~~~~~~~~~~V~sv~fspd--g~~lasgs~Dg~v~iWd~~~~---  179 (420)
T 4gga_A          107 YLNLVDWSSGN-VLAVA-LDNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKE--GNYLAVGTSSAEVQLWDVQQQ---  179 (420)
T ss_dssp             TCBCEEECTTS-EEEEE-ETTEEEEEETTTCCEEEEEECCSTTCCEEEEEECTT--SSEEEEEETTSCEEEEETTTT---
T ss_pred             cceeEEECCCC-EEEEE-eCCEEEEEECCCCCEEEEEEecCCCCcEEEEEECCC--CCEEEEEECCCeEEEEEcCCC---
Confidence            35668999754 67665 599999999876554445556788889999999864  899999999999999999775   


Q ss_pred             eEEEEecCCCCCeeEEEecCCCCCcEEEEEecCCcEEEEEecCCCCeeeeeecccCCCCeEEEEeCCCCCCCceeecccC
Q 022111           93 TQAHTFNDHKSSVNSIAWAPHELGLSLACGSSDGNISVFTATADGGWDTTRIDQAHPVGVTSVSWAPAMAPGALVGLGLL  172 (302)
Q Consensus        93 ~~~~~~~~h~~~i~~l~~~pd~~~~~l~sg~~d~~v~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~  172 (302)
                      ..+..+.+|...+.++++++    ..|++|+.|+.+++|+...... ....+ .+|...+..+.|+|.+           
T Consensus       180 ~~~~~~~~h~~~v~~~s~~~----~~l~sgs~d~~i~~~d~~~~~~-~~~~~-~~h~~~~~~~~~~~~g-----------  242 (420)
T 4gga_A          180 KRLRNMTSHSARVGSLSWNS----YILSSGSRSGHIHHHDVRVAEH-HVATL-SGHSQEVCGLRWAPDG-----------  242 (420)
T ss_dssp             EEEEEECCCSSCEEEEEEET----TEEEEEETTSEEEEEETTSSSC-EEEEE-ECCSSCEEEEEECTTS-----------
T ss_pred             cEEEEEeCCCCceEEEeeCC----CEEEEEeCCCceeEeeecccce-eeEEe-cccccceeeeeecCCC-----------
Confidence            46778889999999999864    4899999999999999875432 22333 3788999999999864           


Q ss_pred             CCceeEEEeeCCCcEEEEEEecCccccccccccccCCCceeEEEeeCCCCCCccEEEE--EecCCeEEEEEeccCCccee
Q 022111          173 DPVQKLASCGCDNTVKVWKMYNGIWKMDCFPALQMHSDWVRSVAWAPNLGLPKSTIAS--ASQDGTVVIWTCAKEGEQWE  250 (302)
Q Consensus       173 ~~~~~l~s~~~D~~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~l~s--~s~D~~i~iwd~~~~~~~~~  250 (302)
                         ..+++++.|+.+++||...+......+.....|...|.+++|+|..   +..+++  |+.|++|++||+.....   
T Consensus       243 ---~~l~s~~~D~~v~i~~~~~~~~~~~~~~~~~~~~~~V~~~~~~p~~---~~~la~~~gs~D~~I~iwd~~t~~~---  313 (420)
T 4gga_A          243 ---RHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQ---SNVLATGGGTSDRHIRIWNVCSGAC---  313 (420)
T ss_dssp             ---SEEEEEETTSCEEEEESSCCSSCSCCSEEECCCSSCEEEEEECTTC---TTEEEEEECTTTCEEEEEETTTTEE---
T ss_pred             ---CeeeeeeccccceEEeeccccccceeeeeecccCCceeeeeeCCCc---ccEEEEEeecCCCEEEEEeCCcccc---
Confidence               7899999999999999987643333455667899999999999985   356655  46899999999976421   


Q ss_pred             eeeeccCCCcEEEEEEccCCCEEEEec--CC-ceEEeeecCCce
Q 022111          251 GRVLKDFKTPVWSVSWSLTGNLLAVAD--AN-NVTLWKEAVDGE  291 (302)
Q Consensus       251 ~~~~~~~~~~v~~~~~spdg~~la~~~--~d-~i~~w~~~~~~~  291 (302)
                       .........+.++.|+|+++.|++++  .| .|++|+......
T Consensus       314 -~~~~~~~~~v~~~~~~~~~~~lv~~sg~~d~~I~iwd~~~~~~  356 (420)
T 4gga_A          314 -LSAVDAHSQVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAK  356 (420)
T ss_dssp             -EEEEECSSCEEEEEEETTTTEEEEEECTTTCCEEEEETTTCCE
T ss_pred             -ceeeccccceeeeeecCCCCeEEEEEecCCCEEEEEECCCCcE
Confidence             11123456799999999999988764  45 699999865433

>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*

Probab=99.98  E-value=1.9e-29  Score=228.07  Aligned_cols=241  Identities=24%  Similarity=0.420  Sum_probs=194.6

Q ss_pred             cccccccccceeEEEEccCCCEEEEeeCCCcEEEEeecCCCceEEEEecCcccCeEEEEeeCCCCCCEEEEEeCCCeEEE
Q 022111            4 QKIETGHEDTVHDVAMDFYGKRLATASSDSSIKIIGLSNSASQHLATLKGHRGPVWQVAWAHPKFGSILASCSYDGQVII   83 (302)
Q Consensus         4 ~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~s~D~~i~i   83 (302)
                      .+.+.+|.+.|.. ++++++++|++|+.|++|++||+..  .+.+..+.+|.+.|++++|+    +++|++|+.|++|++
T Consensus       111 ~~~l~~h~~~v~~-~~~~~g~~l~sg~~dg~i~vwd~~~--~~~~~~~~~h~~~v~~~~~~----~~~l~s~~~dg~i~v  183 (445)
T 2ovr_B          111 PKVLKGHDDHVIT-CLQFCGNRIVSGSDDNTLKVWSAVT--GKCLRTLVGHTGGVWSSQMR----DNIIISGSTDRTLKV  183 (445)
T ss_dssp             CEEEECSTTSCEE-EEEEETTEEEEEETTSCEEEEETTT--CCEEEECCCCSSCEEEEEEE----TTEEEEEETTSCEEE
T ss_pred             eEEecccCCCcEE-EEEEcCCEEEEEECCCcEEEEECCC--CcEEEEEcCCCCCEEEEEec----CCEEEEEeCCCeEEE
Confidence            3456789987643 3566799999999999999999865  35677889999999999996    469999999999999


Q ss_pred             EEcCCCCceeEEEEecCCCCCeeEEEecCCCCCcEEEEEecCCcEEEEEecCCCCeeeeeecccCCCCeEEEEeCCCCCC
Q 022111           84 WKEGNQNDWTQAHTFNDHKSSVNSIAWAPHELGLSLACGSSDGNISVFTATADGGWDTTRIDQAHPVGVTSVSWAPAMAP  163 (302)
Q Consensus        84 wd~~~~~~~~~~~~~~~h~~~i~~l~~~pd~~~~~l~sg~~d~~v~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~  163 (302)
                      ||+.++   .....+.+|...|.++.|++    ..+++|+.|+.|++||+.+...  ...+ ..|...+.++.|.     
T Consensus       184 wd~~~~---~~~~~~~~h~~~v~~~~~~~----~~l~s~s~dg~i~~wd~~~~~~--~~~~-~~~~~~v~~~~~~-----  248 (445)
T 2ovr_B          184 WNAETG---ECIHTLYGHTSTVRCMHLHE----KRVVSGSRDATLRVWDIETGQC--LHVL-MGHVAAVRCVQYD-----  248 (445)
T ss_dssp             EETTTT---EEEEEECCCSSCEEEEEEET----TEEEEEETTSEEEEEESSSCCE--EEEE-ECCSSCEEEEEEC-----
T ss_pred             EECCcC---cEEEEECCCCCcEEEEEecC----CEEEEEeCCCEEEEEECCCCcE--EEEE-cCCcccEEEEEEC-----
Confidence            999775   46778889999999999974    3799999999999999875432  2233 3788899999883     


Q ss_pred             CceeecccCCCceeEEEeeCCCcEEEEEEecCccccccccccccCCCceeEEEeeCCCCCCccEEEEEecCCeEEEEEec
Q 022111          164 GALVGLGLLDPVQKLASCGCDNTVKVWKMYNGIWKMDCFPALQMHSDWVRSVAWAPNLGLPKSTIASASQDGTVVIWTCA  243 (302)
Q Consensus       164 ~~~~~~~~~~~~~~l~s~~~D~~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~l~s~s~D~~i~iwd~~  243 (302)
                                 +..|++|+.|+.|++||++++    .++..+.+|...|.+++|  +    +..+++++.|+.|++||++
T Consensus       249 -----------~~~l~~~~~dg~i~iwd~~~~----~~~~~~~~~~~~v~~~~~--~----~~~l~~~~~d~~i~i~d~~  307 (445)
T 2ovr_B          249 -----------GRRVVSGAYDFMVKVWDPETE----TCLHTLQGHTNRVYSLQF--D----GIHVVSGSLDTSIRVWDVE  307 (445)
T ss_dssp             -----------SSCEEEEETTSCEEEEEGGGT----EEEEEECCCSSCEEEEEE--C----SSEEEEEETTSCEEEEETT
T ss_pred             -----------CCEEEEEcCCCEEEEEECCCC----cEeEEecCCCCceEEEEE--C----CCEEEEEeCCCeEEEEECC
Confidence                       368999999999999999876    455677889999999999  3    3689999999999999997


Q ss_pred             cCCcceeeeeeccCCCcEEEEEEccCCCEEEEecCC-ceEEeeecCCceE
Q 022111          244 KEGEQWEGRVLKDFKTPVWSVSWSLTGNLLAVADAN-NVTLWKEAVDGEW  292 (302)
Q Consensus       244 ~~~~~~~~~~~~~~~~~v~~~~~spdg~~la~~~~d-~i~~w~~~~~~~~  292 (302)
                      ....   ......+...+.++++  ++++|++++.| .|++|+.......
T Consensus       308 ~~~~---~~~~~~~~~~v~~~~~--~~~~l~~~~~dg~i~vwd~~~~~~~  352 (445)
T 2ovr_B          308 TGNC---IHTLTGHQSLTSGMEL--KDNILVSGNADSTVKIWDIKTGQCL  352 (445)
T ss_dssp             TCCE---EEEECCCCSCEEEEEE--ETTEEEEEETTSCEEEEETTTCCEE
T ss_pred             CCCE---EEEEcCCcccEEEEEE--eCCEEEEEeCCCeEEEEECCCCcEE
Confidence            6432   2234567777887776  56799999888 7999998654433

>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A

Probab=99.98  E-value=2.1e-30  Score=225.33  Aligned_cols=239  Identities=14%  Similarity=0.191  Sum_probs=188.7

Q ss_pred             ccccccceeEEEEccCCC-EEEEeeCCCcEEEEee-cCCCceEEEEecC--cccCeEEEEeeCCCCCCEEEEEeCCCeEE
Q 022111            7 ETGHEDTVHDVAMDFYGK-RLATASSDSSIKIIGL-SNSASQHLATLKG--HRGPVWQVAWAHPKFGSILASCSYDGQVI   82 (302)
Q Consensus         7 ~~~h~~~v~~~~~s~~~~-~l~s~~~d~~v~lw~~-~~~~~~~~~~~~~--h~~~v~~v~~~~~~~~~~l~s~s~D~~i~   82 (302)
                      ..+|...|++++|+++++ +|++|+.|+.|++|++ ....   ...+.+  |...|.+++|++   +++|++++.|+.|+
T Consensus        52 ~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~---~~~~~~~~~~~~v~~l~~~~---~~~l~s~~~d~~i~  125 (342)
T 1yfq_A           52 SLRYKHPLLCCNFIDNTDLQIYVGTVQGEILKVDLIGSPS---FQALTNNEANLGICRICKYG---DDKLIAASWDGLIE  125 (342)
T ss_dssp             EEECSSCEEEEEEEESSSEEEEEEETTSCEEEECSSSSSS---EEECBSCCCCSCEEEEEEET---TTEEEEEETTSEEE
T ss_pred             eeecCCceEEEEECCCCCcEEEEEcCCCeEEEEEeccCCc---eEeccccCCCCceEEEEeCC---CCEEEEEcCCCeEE
Confidence            448999999999999999 9999999999999998 6543   356778  999999999985   68999999999999


Q ss_pred             EEEcCCCCc------eeEEEEecCCCCCeeEEEecCCCCCcEEEEEecCCcEEEEEecC-CCCeeeeeecccCCCCeEEE
Q 022111           83 IWKEGNQND------WTQAHTFNDHKSSVNSIAWAPHELGLSLACGSSDGNISVFTATA-DGGWDTTRIDQAHPVGVTSV  155 (302)
Q Consensus        83 iwd~~~~~~------~~~~~~~~~h~~~i~~l~~~pd~~~~~l~sg~~d~~v~~~~~~~-~~~~~~~~~~~~h~~~v~~~  155 (302)
                      +||++....      ..++..+. |...|.+++|+|+  +  +++++.|+.|++||++. ... ........|...+.++
T Consensus       126 iwd~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~~~~--~--l~~~~~d~~i~i~d~~~~~~~-~~~~~~~~~~~~i~~i  199 (342)
T 1yfq_A          126 VIDPRNYGDGVIAVKNLNSNNTK-VKNKIFTMDTNSS--R--LIVGMNNSQVQWFRLPLCEDD-NGTIEESGLKYQIRDV  199 (342)
T ss_dssp             EECHHHHTTBCEEEEESCSSSSS-SCCCEEEEEECSS--E--EEEEESTTEEEEEESSCCTTC-CCEEEECSCSSCEEEE
T ss_pred             EEcccccccccccccCCeeeEEe-eCCceEEEEecCC--c--EEEEeCCCeEEEEECCccccc-cceeeecCCCCceeEE
Confidence            999864000      12344455 8899999999986  2  99999999999999976 322 1222233678889999


Q ss_pred             EeCC-CCCCCceeecccCCCceeEEEeeCCCcEEEEEEecC--ccccccccccccCCC---------ceeEEEeeCCCCC
Q 022111          156 SWAP-AMAPGALVGLGLLDPVQKLASCGCDNTVKVWKMYNG--IWKMDCFPALQMHSD---------WVRSVAWAPNLGL  223 (302)
Q Consensus       156 ~~~~-~~~~~~~~~~~~~~~~~~l~s~~~D~~v~iwd~~~~--~~~~~~~~~~~~h~~---------~v~~v~~~p~~~~  223 (302)
                      +|+| ++              ..|++++.|+.|++||+...  .........+.+|..         .|.+++|+|++  
T Consensus       200 ~~~~~~~--------------~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~--  263 (342)
T 1yfq_A          200 ALLPKEQ--------------EGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRH--  263 (342)
T ss_dssp             EECSGGG--------------CEEEEEETTSEEEEEECCTTCCSTTCTTCEEEECCCCCTTCCSSCCCEEEEEECTTT--
T ss_pred             EECCCCC--------------CEEEEEecCCcEEEEEEcCCCcccccccceeeecccccccccccceeEEEEEEcCCC--
Confidence            9998 63              78999999999999999765  111123344555644         99999999985  


Q ss_pred             CccEEEEEecCCeEEEEEeccCCcceeeeeeccC-CCcEEEEEEccCCCEEEEecCCc
Q 022111          224 PKSTIASASQDGTVVIWTCAKEGEQWEGRVLKDF-KTPVWSVSWSLTGNLLAVADANN  280 (302)
Q Consensus       224 ~~~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~~-~~~v~~~~~spdg~~la~~~~d~  280 (302)
                        .+|++++.|+.|++||++....   ...+..+ ..+|.+++  |+|++|++++.|+
T Consensus       264 --~~l~~~~~dg~i~vwd~~~~~~---~~~~~~~h~~~v~~~~--~~~~~l~s~s~Dg  314 (342)
T 1yfq_A          264 --KFLYTAGSDGIISCWNLQTRKK---IKNFAKFNEDSVVKIA--CSDNILCLATSDD  314 (342)
T ss_dssp             --CCEEEEETTSCEEEEETTTTEE---EEECCCCSSSEEEEEE--ECSSEEEEEEECT
T ss_pred             --CEEEEecCCceEEEEcCccHhH---hhhhhcccCCCceEec--CCCCeEEEEecCC
Confidence              6799999999999999975421   2234566 88899999  9999999998884

>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A

Probab=99.98  E-value=1e-29  Score=237.61  Aligned_cols=249  Identities=13%  Similarity=0.220  Sum_probs=199.3

Q ss_pred             cccccccccc-eeEEEEcc--CCCEEEEeeCCCcEEEEeecCC------CceEEEEecCcccCeEEEEeeCCCCCCEEEE
Q 022111            4 QKIETGHEDT-VHDVAMDF--YGKRLATASSDSSIKIIGLSNS------ASQHLATLKGHRGPVWQVAWAHPKFGSILAS   74 (302)
Q Consensus         4 ~~~~~~h~~~-v~~~~~s~--~~~~l~s~~~d~~v~lw~~~~~------~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s   74 (302)
                      ...+.+|... |++++|+|  ++++||+++.|++|++|++...      ..+....+.+|...|.+++|+++  +++|++
T Consensus        56 ~~~~~~h~~~~v~~~~~sp~~~~~~l~s~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~--~~~l~~  133 (615)
T 1pgu_A           56 VVQFTGHGSSVVTTVKFSPIKGSQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFE--GRRLCV  133 (615)
T ss_dssp             EEEECTTTTSCEEEEEECSSTTCCEEEEEETTSEEEEEEEEEEGGGTEEEEEEEEEEECCSSCEEEEEECTT--SSEEEE
T ss_pred             ceEEecCCCceEEEEEECcCCCCCEEEEecCCCEEEEEeCCCCcccccccccccchhhcccccEEEEEEeCC--CCEEEE
Confidence            3446789999 99999999  9999999999999999999643      23556778889999999999864  889999


Q ss_pred             EeCC----CeEEEEEcCCCCceeEEEEecCCCCCeeEEEecCCCCCcEEEEEecCCcEEEEEecCCCCeeeeeecccCCC
Q 022111           75 CSYD----GQVIIWKEGNQNDWTQAHTFNDHKSSVNSIAWAPHELGLSLACGSSDGNISVFTATADGGWDTTRIDQAHPV  150 (302)
Q Consensus        75 ~s~D----~~i~iwd~~~~~~~~~~~~~~~h~~~i~~l~~~pd~~~~~l~sg~~d~~v~~~~~~~~~~~~~~~~~~~h~~  150 (302)
                      ++.|    +.|.+||.  .   .....+.+|...|.+++|+|+. ..++++++.|+.|++||.....  ....+. .|..
T Consensus       134 ~~~~~~~~~~v~~~d~--~---~~~~~~~~~~~~v~~~~~~~~~-~~~l~~~~~d~~v~vwd~~~~~--~~~~~~-~~~~  204 (615)
T 1pgu_A          134 VGEGRDNFGVFISWDS--G---NSLGEVSGHSQRINACHLKQSR-PMRSMTVGDDGSVVFYQGPPFK--FSASDR-THHK  204 (615)
T ss_dssp             EECCSSCSEEEEETTT--C---CEEEECCSCSSCEEEEEECSSS-SCEEEEEETTTEEEEEETTTBE--EEEEEC-SSSC
T ss_pred             eccCCCCccEEEEEEC--C---CcceeeecCCccEEEEEECCCC-CcEEEEEeCCCcEEEEeCCCcc--eeeeec-ccCC
Confidence            9988    68999983  2   2567788999999999999983 2379999999999999976432  223333 6777


Q ss_pred             ---CeEEEEeCCCCCCCceeecccCCCceeEEEeeCCCcEEEEEEecCcccccccccc-c---cCCCceeEEEeeCCCCC
Q 022111          151 ---GVTSVSWAPAMAPGALVGLGLLDPVQKLASCGCDNTVKVWKMYNGIWKMDCFPAL-Q---MHSDWVRSVAWAPNLGL  223 (302)
Q Consensus       151 ---~v~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~D~~v~iwd~~~~~~~~~~~~~~-~---~h~~~v~~v~~~p~~~~  223 (302)
                         .|.+++|+|+.             +.+|++++.|+.|++||+.++.    .+..+ .   +|...|.+++|+ ++  
T Consensus       205 ~~~~v~~~~~~~~~-------------~~~l~~~~~dg~i~vwd~~~~~----~~~~~~~~~~~~~~~v~~~~~~-~~--  264 (615)
T 1pgu_A          205 QGSFVRDVEFSPDS-------------GEFVITVGSDRKISCFDGKSGE----FLKYIEDDQEPVQGGIFALSWL-DS--  264 (615)
T ss_dssp             TTCCEEEEEECSTT-------------CCEEEEEETTCCEEEEETTTCC----EEEECCBTTBCCCSCEEEEEES-SS--
T ss_pred             CCceEEEEEECCCC-------------CCEEEEEeCCCeEEEEECCCCC----EeEEecccccccCCceEEEEEc-CC--
Confidence               89999999861             3789999999999999998763    33445 4   899999999999 64  


Q ss_pred             CccEEEEEecCCeEEEEEeccCCcceeeeee---ccCCCcEEEEEEccCCCEEEEecCC-ceEEeeecC
Q 022111          224 PKSTIASASQDGTVVIWTCAKEGEQWEGRVL---KDFKTPVWSVSWSLTGNLLAVADAN-NVTLWKEAV  288 (302)
Q Consensus       224 ~~~~l~s~s~D~~i~iwd~~~~~~~~~~~~~---~~~~~~v~~~~~spdg~~la~~~~d-~i~~w~~~~  288 (302)
                        ..|++++.|+.|++||++.....  ..+.   ......+.++.|+ ++++|++++.+ .|++|+...
T Consensus       265 --~~l~~~~~d~~i~~wd~~~~~~~--~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~g~i~~~d~~~  328 (615)
T 1pgu_A          265 --QKFATVGADATIRVWDVTTSKCV--QKWTLDKQQLGNQQVGVVAT-GNGRIISLSLDGTLNFYELGH  328 (615)
T ss_dssp             --SEEEEEETTSEEEEEETTTTEEE--EEEECCTTCGGGCEEEEEEE-ETTEEEEEETTSCEEEEETTE
T ss_pred             --CEEEEEcCCCcEEEEECCCCcEE--EEEcCCCCcccCceeEEEeC-CCCeEEEEECCCCEEEEECCC
Confidence              78999999999999999754211  1111   1123568889996 88999999888 799999764

>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A

Probab=99.98  E-value=8e-30  Score=224.32  Aligned_cols=248  Identities=16%  Similarity=0.189  Sum_probs=173.5

Q ss_pred             ccccccceeEEEEccCCCEEEEeeCCCcEEEEeecCCCceEEEEecCcccCeEEEEeeCCCCCCEE-EEEeCCCeEEEEE
Q 022111            7 ETGHEDTVHDVAMDFYGKRLATASSDSSIKIIGLSNSASQHLATLKGHRGPVWQVAWAHPKFGSIL-ASCSYDGQVIIWK   85 (302)
Q Consensus         7 ~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l-~s~s~D~~i~iwd   85 (302)
                      ..+|...|++++|+|||++||+|+.|+ +++|+...  .+.....  +...+..+++.+.  ++.+ ++++.|++|++||
T Consensus        15 ~~~h~~~V~~v~fs~dg~~la~g~~~~-~~iw~~~~--~~~~~~~--~~~~~~~~~~~~~--~~~~~~~~~~d~~v~iWd   87 (355)
T 3vu4_A           15 ENHVSNPVTDYEFNQDQSCLILSTLKS-FEIYNVHP--VAHIMSQ--EMRHLSKVRMLHR--TNYVAFVTGVKEVVHIWD   87 (355)
T ss_dssp             ----CCCCCEEEECTTSSEEEEECSSE-EEEEEETT--EEEEEEE--ECSCCCEEEECTT--SSEEEEECSSTTEEEEEE
T ss_pred             cccCCCceEEEEECCCCCEEEEEcCCE-EEEEecCC--cceeeee--ecCCeEEEEEcCC--CCEEEEEECCccEEEEEE
Confidence            468999999999999999999888665 78999864  3333222  2224667777653  4555 6778899999999


Q ss_pred             cCCCCceeEEEEecCCCCCeeEEEecCCC---------------CC------------------cEEEE--EecCCcEEE
Q 022111           86 EGNQNDWTQAHTFNDHKSSVNSIAWAPHE---------------LG------------------LSLAC--GSSDGNISV  130 (302)
Q Consensus        86 ~~~~~~~~~~~~~~~h~~~i~~l~~~pd~---------------~~------------------~~l~s--g~~d~~v~~  130 (302)
                      ..++.   ++..+. +..+|.+++|+++.               .+                  ..++.  |+.|+.|++
T Consensus        88 ~~~~~---~~~~~~-~~~~v~~v~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~s~~~la~~sg~~~g~v~i  163 (355)
T 3vu4_A           88 DVKKQ---DVSRIK-VDAPVKDLFLSREFIVVSYGDVISVFKFGNPWKRITDDIRFGGVCEFSNGLLVYSNEFNLGQIHI  163 (355)
T ss_dssp             TTTTE---EEEEEE-CSSCEEEEEECSSEEEEEETTEEEEEESSTTCCBSSCCEEEEEEEEEETTEEEEEESSCTTCEEE
T ss_pred             CCCCc---EEEEEE-CCCceEEEEEcCCEEEEEEcCEEEEEECCCCceeeEEeccCCceEEEEccEEEEeCCCcCcEEEE
Confidence            87653   455555 66788888887741               00                  12233  567777777


Q ss_pred             EEecCCCCe-------------e-eeeecccCCCCeEEEEeCCCCCCCceeecccCCCceeEEEeeCCCc-EEEEEEecC
Q 022111          131 FTATADGGW-------------D-TTRIDQAHPVGVTSVSWAPAMAPGALVGLGLLDPVQKLASCGCDNT-VKVWKMYNG  195 (302)
Q Consensus       131 ~~~~~~~~~-------------~-~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~D~~-v~iwd~~~~  195 (302)
                      ||+......             . ...+ .+|...|++++|+|+              +.+|++|+.|++ |+|||++++
T Consensus       164 wd~~~~~~~~~~~~~~~~~~~~p~~~~~-~~h~~~v~~~~~s~~--------------g~~l~s~s~d~~~v~iwd~~~~  228 (355)
T 3vu4_A          164 TKLQSSGSATTQDQGVQQKAILGKGVLI-KAHTNPIKMVRLNRK--------------SDMVATCSQDGTIIRVFKTEDG  228 (355)
T ss_dssp             EECCC------------------CCEEE-CCCSSCEEEEEECTT--------------SSEEEEEETTCSEEEEEETTTC
T ss_pred             EECCCCCccccccccccccccCcccEEE-EccCCceEEEEECCC--------------CCEEEEEeCCCCEEEEEECCCC
Confidence            777643200             0 1223 378999999999986              479999999998 999999876


Q ss_pred             ccccccccccc-c-CCCceeEEEeeCCCCCCccEEEEEecCCeEEEEEeccCCcceeee--------------------e
Q 022111          196 IWKMDCFPALQ-M-HSDWVRSVAWAPNLGLPKSTIASASQDGTVVIWTCAKEGEQWEGR--------------------V  253 (302)
Q Consensus       196 ~~~~~~~~~~~-~-h~~~v~~v~~~p~~~~~~~~l~s~s~D~~i~iwd~~~~~~~~~~~--------------------~  253 (302)
                          .++..+. + |...|++++|+|++    ++|++++.|++|+|||++.........                    +
T Consensus       229 ----~~~~~~~~g~h~~~v~~~~~s~~~----~~l~s~s~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  300 (355)
T 3vu4_A          229 ----VLVREFRRGLDRADVVDMKWSTDG----SKLAVVSDKWTLHVFEIFNDQDNKRHALKGWINMKYFQSEWSLCNFKL  300 (355)
T ss_dssp             ----CEEEEEECTTCCSCEEEEEECTTS----CEEEEEETTCEEEEEESSCCSCCCSEETTTTEECCCCCCSSCSEEEEC
T ss_pred             ----cEEEEEEcCCCCCcEEEEEECCCC----CEEEEEECCCEEEEEEccCCCCcccccccceeeccccccccceeEEEe
Confidence                3455666 5 99999999999995    789999999999999997532110000                    0


Q ss_pred             eccCCCcEEEEEEccCCCEEEEecCC-ceEEeeecC
Q 022111          254 LKDFKTPVWSVSWSLTGNLLAVADAN-NVTLWKEAV  288 (302)
Q Consensus       254 ~~~~~~~v~~~~~spdg~~la~~~~d-~i~~w~~~~  288 (302)
                      ......+...++|+|||++|++++.| .+++|+...
T Consensus       301 ~~~~~~~~~~~a~~~d~~~l~~~~~dg~~~~~~~~~  336 (355)
T 3vu4_A          301 SVDKHVRGCKIAWISESSLVVVWPHTRMIETFKVVF  336 (355)
T ss_dssp             CCCTTCCCCEEEESSSSEEEEEETTTTEEEEEEEEE
T ss_pred             ccCCCCCceEEEEeCCCCEEEEEeCCCeEEEEEEEc
Confidence            00111234679999999999999888 699998643

>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=99.98  E-value=9.6e-31  Score=238.03  Aligned_cols=239  Identities=14%  Similarity=0.153  Sum_probs=182.0

Q ss_pred             cccceeEEEEccCCCEEEEeeCCCcEEEEeecCCC---------------------------ceEEEEec-CcccCeEEE
Q 022111           10 HEDTVHDVAMDFYGKRLATASSDSSIKIIGLSNSA---------------------------SQHLATLK-GHRGPVWQV   61 (302)
Q Consensus        10 h~~~v~~~~~s~~~~~l~s~~~d~~v~lw~~~~~~---------------------------~~~~~~~~-~h~~~v~~v   61 (302)
                      -+..|.+++|+|||+++||++.|++|+  |.....                           .+....+. .|+..|.++
T Consensus        14 ~~~~v~sv~~SpDG~~iASas~D~TV~--d~~~~~~l~gh~~~v~~V~FsPdg~~~~~~~~~~~~~~~~~~~~~~~V~~v   91 (588)
T 2j04_A           14 FEDWKNNLTWARDGTLYLTTFPDISIG--QPKYAKDINCNSKNLFHVKEFPLEFENKLDFELAQQNGLLNSQPVCYPRVC   91 (588)
T ss_dssp             CSSSSCCEEECTTSCEEEECSSSEEEE--EECCCSCCSSBGGGTEEEEEECCCCCCTTTTSCCCSSCSSTTSCSCCEEEE
T ss_pred             hhccEEEEEECCCCCEEEEEcCCceee--cccccceecCCCccEEEEEECCCCCcceEEEEeCCCceEeecCCCCcEEEE
Confidence            457899999999999999999999996  321110                           00001122 567889999


Q ss_pred             EeeCCCCCCEEEEEeCCCeEEEEEcCCCCceeEEEEecCCCC-----CeeEEEecCCCCCcEEEEEecCCcEEEEEecCC
Q 022111           62 AWAHPKFGSILASCSYDGQVIIWKEGNQNDWTQAHTFNDHKS-----SVNSIAWAPHELGLSLACGSSDGNISVFTATAD  136 (302)
Q Consensus        62 ~~~~~~~~~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~h~~-----~i~~l~~~pd~~~~~l~sg~~d~~v~~~~~~~~  136 (302)
                      +|+|+  |++||+++.||++++||.+.     .+..+. |..     .|.+++||||  |++||+|+.||+|++|++...
T Consensus        92 awSPd--G~~LAs~s~dg~V~iwd~~~-----~l~~l~-~~~~~~~~sv~svafSPD--G~~LAsgs~DGtVkIWd~~~~  161 (588)
T 2j04_A           92 KPSPI--DDWMAVLSNNGNVSVFKDNK-----MLTNLD-SKGNLSSRTYHCFEWNPI--ESSIVVGNEDGELQFFSIRKN  161 (588)
T ss_dssp             EECSS--SSCEEEEETTSCEEEEETTE-----EEEECC-CSSCSTTTCEEEEEECSS--SSCEEEEETTSEEEEEECCCC
T ss_pred             EECCC--CCEEEEEeCCCcEEEEeCCc-----eeeecc-CCCccccccEEEEEEcCC--CCEEEEEcCCCEEEEEECCCC
Confidence            99874  89999999999999999532     556666 665     4999999998  779999999999999998754


Q ss_pred             CC-----eeeeee---cccCCCCeEEEEeCCCCCCCceeecccCCCceeEEEeeCCCcEEEEEEecCcccccccccc-cc
Q 022111          137 GG-----WDTTRI---DQAHPVGVTSVSWAPAMAPGALVGLGLLDPVQKLASCGCDNTVKVWKMYNGIWKMDCFPAL-QM  207 (302)
Q Consensus       137 ~~-----~~~~~~---~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~D~~v~iwd~~~~~~~~~~~~~~-~~  207 (302)
                      ..     .....+   ..+|...|.+++|+|+               . +++++.|++|++||+.++... ...+++ .+
T Consensus       162 ~l~~~~~i~l~ti~~~~~gh~~~V~sVawSPd---------------g-Laass~D~tVrlWd~~~~~~~-~~~~tL~~~  224 (588)
T 2j04_A          162 SENTPEFYFESSIRLSDAGSKDWVTHIVWYED---------------V-LVAALSNNSVFSMTVSASSHQ-PVSRMIQNA  224 (588)
T ss_dssp             TTTCCCCEEEEEEECSCTTCCCCEEEEEEETT---------------E-EEEEETTCCEEEECCCSSSSC-CCEEEEECC
T ss_pred             ccccccceeeeeeecccccccccEEEEEEcCC---------------c-EEEEeCCCeEEEEECCCCccc-cceeeeccc
Confidence            21     012233   1468889999999985               4 889999999999999875311 112345 47


Q ss_pred             CCCceeEEEeeCCCCCCccEEEEEecCCeEEEEEeccCCcceeeeeeccCCCcEEEEEE--ccCCCEEEEecCCceEEee
Q 022111          208 HSDWVRSVAWAPNLGLPKSTIASASQDGTVVIWTCAKEGEQWEGRVLKDFKTPVWSVSW--SLTGNLLAVADANNVTLWK  285 (302)
Q Consensus       208 h~~~v~~v~~~p~~~~~~~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~--spdg~~la~~~~d~i~~w~  285 (302)
                      |...|.+++|+ +     +.||+++ +++|++||+.....   .....+|...|++++|  +||+..|++|+.++.++|.
T Consensus       225 h~~~V~svaFs-g-----~~LASa~-~~tIkLWd~~~~~~---~~~~~gh~~~V~~va~~~s~d~~~La~a~edG~klw~  294 (588)
T 2j04_A          225 SRRKITDLKIV-D-----YKVVLTC-PGYVHKIDLKNYSI---SSLKTGSLENFHIIPLNHEKESTILLMSNKTSYKVLL  294 (588)
T ss_dssp             CSSCCCCEEEE-T-----TEEEEEC-SSEEEEEETTTTEE---EEEECSCCSCCCEEEETTCSSCEEEEECSSCEEEEEE
T ss_pred             ccCcEEEEEEE-C-----CEEEEEe-CCeEEEEECCCCeE---EEEEcCCCceEEEEEeeeCCCCCEEEEEcCCCCEEEe
Confidence            88999999999 3     5788887 69999999875321   1233378889999999  9999999999988449998


Q ss_pred             ec
Q 022111          286 EA  287 (302)
Q Consensus       286 ~~  287 (302)
                      ..
T Consensus       295 ~d  296 (588)
T 2j04_A          295 ED  296 (588)
T ss_dssp             SS
T ss_pred             ec
Confidence            64

>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*

Probab=99.97  E-value=7.8e-29  Score=224.00  Aligned_cols=242  Identities=19%  Similarity=0.314  Sum_probs=194.9

Q ss_pred             cccccccceeEEEEccCCCEEEEeeCCCcEEEEeecCCCceEEEEecCcccCeEEEEeeCCCCCCEEEEEeCCCeEEEEE
Q 022111            6 IETGHEDTVHDVAMDFYGKRLATASSDSSIKIIGLSNSASQHLATLKGHRGPVWQVAWAHPKFGSILASCSYDGQVIIWK   85 (302)
Q Consensus         6 ~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~s~D~~i~iwd   85 (302)
                      .+.+|...|++++|+  +++|++|+.|++|++||+..  .+.+..+.+|...|.+++|.    +++|++|+.|++|++||
T Consensus       154 ~~~~h~~~v~~~~~~--~~~l~s~~~dg~i~vwd~~~--~~~~~~~~~h~~~v~~~~~~----~~~l~s~s~dg~i~~wd  225 (445)
T 2ovr_B          154 TLVGHTGGVWSSQMR--DNIIISGSTDRTLKVWNAET--GECIHTLYGHTSTVRCMHLH----EKRVVSGSRDATLRVWD  225 (445)
T ss_dssp             ECCCCSSCEEEEEEE--TTEEEEEETTSCEEEEETTT--TEEEEEECCCSSCEEEEEEE----TTEEEEEETTSEEEEEE
T ss_pred             EEcCCCCCEEEEEec--CCEEEEEeCCCeEEEEECCc--CcEEEEECCCCCcEEEEEec----CCEEEEEeCCCEEEEEE
Confidence            466899999999987  67999999999999999865  45678889999999999995    46899999999999999


Q ss_pred             cCCCCceeEEEEecCCCCCeeEEEecCCCCCcEEEEEecCCcEEEEEecCCCCeeeeeecccCCCCeEEEEeCCCCCCCc
Q 022111           86 EGNQNDWTQAHTFNDHKSSVNSIAWAPHELGLSLACGSSDGNISVFTATADGGWDTTRIDQAHPVGVTSVSWAPAMAPGA  165 (302)
Q Consensus        86 ~~~~~~~~~~~~~~~h~~~i~~l~~~pd~~~~~l~sg~~d~~v~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~  165 (302)
                      +++..   ....+.+|...|.+++|.    +..+++|+.|+.|++||.....  ....+. .|...+.++.|.       
T Consensus       226 ~~~~~---~~~~~~~~~~~v~~~~~~----~~~l~~~~~dg~i~iwd~~~~~--~~~~~~-~~~~~v~~~~~~-------  288 (445)
T 2ovr_B          226 IETGQ---CLHVLMGHVAAVRCVQYD----GRRVVSGAYDFMVKVWDPETET--CLHTLQ-GHTNRVYSLQFD-------  288 (445)
T ss_dssp             SSSCC---EEEEEECCSSCEEEEEEC----SSCEEEEETTSCEEEEEGGGTE--EEEEEC-CCSSCEEEEEEC-------
T ss_pred             CCCCc---EEEEEcCCcccEEEEEEC----CCEEEEEcCCCEEEEEECCCCc--EeEEec-CCCCceEEEEEC-------
Confidence            97753   567788899999999993    4589999999999999987542  223333 788889999883       


Q ss_pred             eeecccCCCceeEEEeeCCCcEEEEEEecCccccccccccccCCCceeEEEeeCCCCCCccEEEEEecCCeEEEEEeccC
Q 022111          166 LVGLGLLDPVQKLASCGCDNTVKVWKMYNGIWKMDCFPALQMHSDWVRSVAWAPNLGLPKSTIASASQDGTVVIWTCAKE  245 (302)
Q Consensus       166 ~~~~~~~~~~~~l~s~~~D~~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~l~s~s~D~~i~iwd~~~~  245 (302)
                               +..|++++.|+.|++||++++    .++..+.+|...+.++++++      +.|++|+.|+.|++||++..
T Consensus       289 ---------~~~l~~~~~d~~i~i~d~~~~----~~~~~~~~~~~~v~~~~~~~------~~l~~~~~dg~i~vwd~~~~  349 (445)
T 2ovr_B          289 ---------GIHVVSGSLDTSIRVWDVETG----NCIHTLTGHQSLTSGMELKD------NILVSGNADSTVKIWDIKTG  349 (445)
T ss_dssp             ---------SSEEEEEETTSCEEEEETTTC----CEEEEECCCCSCEEEEEEET------TEEEEEETTSCEEEEETTTC
T ss_pred             ---------CCEEEEEeCCCeEEEEECCCC----CEEEEEcCCcccEEEEEEeC------CEEEEEeCCCeEEEEECCCC
Confidence                     368999999999999999876    34567788999999998864      57999999999999999764


Q ss_pred             CcceeeeeeccCCCcEEEEEEccCCCEEEEecCC-ceEEeeecCCceEE
Q 022111          246 GEQWEGRVLKDFKTPVWSVSWSLTGNLLAVADAN-NVTLWKEAVDGEWQ  293 (302)
Q Consensus       246 ~~~~~~~~~~~~~~~v~~~~~spdg~~la~~~~d-~i~~w~~~~~~~~~  293 (302)
                      ...........+..+|.+++|+  +++|++++.| .|++|+........
T Consensus       350 ~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~v~iwd~~~~~~~~  396 (445)
T 2ovr_B          350 QCLQTLQGPNKHQSAVTCLQFN--KNFVITSSDDGTVKLWDLKTGEFIR  396 (445)
T ss_dssp             CEEEEECSTTSCSSCEEEEEEC--SSEEEEEETTSEEEEEETTTCCEEE
T ss_pred             cEEEEEccCCCCCCCEEEEEEC--CCEEEEEeCCCeEEEEECCCCceee
Confidence            3211101112367789999995  5799999888 79999986544433

>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=99.97  E-value=3.2e-30  Score=234.60  Aligned_cols=233  Identities=12%  Similarity=0.114  Sum_probs=176.8

Q ss_pred             ccccceeEEEEccCCCEEEEeeCCCcEEEEeecCCCceEEEEecCccc-----CeEEEEeeCCCCCCEEEEEeCCCeEEE
Q 022111            9 GHEDTVHDVAMDFYGKRLATASSDSSIKIIGLSNSASQHLATLKGHRG-----PVWQVAWAHPKFGSILASCSYDGQVII   83 (302)
Q Consensus         9 ~h~~~v~~~~~s~~~~~l~s~~~d~~v~lw~~~~~~~~~~~~~~~h~~-----~v~~v~~~~~~~~~~l~s~s~D~~i~i   83 (302)
                      +|.+.|++++|||+|++||+++.||+|+||+...    .+..+. |..     .|.+++|+|+  |++||+|+.||+|+|
T Consensus        83 ~~~~~V~~vawSPdG~~LAs~s~dg~V~iwd~~~----~l~~l~-~~~~~~~~sv~svafSPD--G~~LAsgs~DGtVkI  155 (588)
T 2j04_A           83 QPVCYPRVCKPSPIDDWMAVLSNNGNVSVFKDNK----MLTNLD-SKGNLSSRTYHCFEWNPI--ESSIVVGNEDGELQF  155 (588)
T ss_dssp             SCSCCEEEEEECSSSSCEEEEETTSCEEEEETTE----EEEECC-CSSCSTTTCEEEEEECSS--SSCEEEEETTSEEEE
T ss_pred             CCCCcEEEEEECCCCCEEEEEeCCCcEEEEeCCc----eeeecc-CCCccccccEEEEEEcCC--CCEEEEEcCCCEEEE
Confidence            6788999999999999999999999999999532    555666 665     4999999875  899999999999999


Q ss_pred             EEcCCCCce----eEEEEe----cCCCCCeeEEEecCCCCCcEEEEEecCCcEEEEEecCCCCee-eeeecccCCCCeEE
Q 022111           84 WKEGNQNDW----TQAHTF----NDHKSSVNSIAWAPHELGLSLACGSSDGNISVFTATADGGWD-TTRIDQAHPVGVTS  154 (302)
Q Consensus        84 wd~~~~~~~----~~~~~~----~~h~~~i~~l~~~pd~~~~~l~sg~~d~~v~~~~~~~~~~~~-~~~~~~~h~~~v~~  154 (302)
                      ||+.++...    -.+.++    .+|...|.+++|+||  |  +++++.|++|++|++....... ...+..+|...|.+
T Consensus       156 Wd~~~~~l~~~~~i~l~ti~~~~~gh~~~V~sVawSPd--g--Laass~D~tVrlWd~~~~~~~~~~~tL~~~h~~~V~s  231 (588)
T 2j04_A          156 FSIRKNSENTPEFYFESSIRLSDAGSKDWVTHIVWYED--V--LVAALSNNSVFSMTVSASSHQPVSRMIQNASRRKITD  231 (588)
T ss_dssp             EECCCCTTTCCCCEEEEEEECSCTTCCCCEEEEEEETT--E--EEEEETTCCEEEECCCSSSSCCCEEEEECCCSSCCCC
T ss_pred             EECCCCccccccceeeeeeecccccccccEEEEEEcCC--c--EEEEeCCCeEEEEECCCCccccceeeecccccCcEEE
Confidence            999765310    134555    678899999999998  6  8888999999999986543211 12232367788999


Q ss_pred             EEeCCCCCCCceeecccCCCceeEEEeeCCCcEEEEEEecCccccccccccccCCCceeEEEe--eCCCCCCccEEEEEe
Q 022111          155 VSWAPAMAPGALVGLGLLDPVQKLASCGCDNTVKVWKMYNGIWKMDCFPALQMHSDWVRSVAW--APNLGLPKSTIASAS  232 (302)
Q Consensus       155 ~~~~~~~~~~~~~~~~~~~~~~~l~s~~~D~~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~~--~p~~~~~~~~l~s~s  232 (302)
                      ++|+ .               +.||+++ +++|++||+.++...    ....+|.+.|.+++|  +|++    ..|++++
T Consensus       232 vaFs-g---------------~~LASa~-~~tIkLWd~~~~~~~----~~~~gh~~~V~~va~~~s~d~----~~La~a~  286 (588)
T 2j04_A          232 LKIV-D---------------YKVVLTC-PGYVHKIDLKNYSIS----SLKTGSLENFHIIPLNHEKES----TILLMSN  286 (588)
T ss_dssp             EEEE-T---------------TEEEEEC-SSEEEEEETTTTEEE----EEECSCCSCCCEEEETTCSSC----EEEEECS
T ss_pred             EEEE-C---------------CEEEEEe-CCeEEEEECCCCeEE----EEEcCCCceEEEEEeeeCCCC----CEEEEEc
Confidence            9997 2               5788887 699999998875311    112379999999999  9985    7899999


Q ss_pred             cCCeEEEEEeccC----Cc-----------ceee--eeec--cCCCcEEEEEEccCCCEEEEecC
Q 022111          233 QDGTVVIWTCAKE----GE-----------QWEG--RVLK--DFKTPVWSVSWSLTGNLLAVADA  278 (302)
Q Consensus       233 ~D~~i~iwd~~~~----~~-----------~~~~--~~~~--~~~~~v~~~~~spdg~~la~~~~  278 (302)
                      +||+ |+|..+.-    ..           .|..  ....  +....|++++|||||+.+|+++.
T Consensus       287 edG~-klw~~d~~~~spd~~l~a~~d~~v~lW~~~g~~l~~~~~~~~I~~va~SPdG~~lA~~~~  350 (588)
T 2j04_A          287 KTSY-KVLLEDELHVTADNIIAPYLEKKFKKWSTIWNEFNNYETTLVIHGISLSPDGYSIAIVYD  350 (588)
T ss_dssp             SCEE-EEEESSSEEEECCCSSHHHHHHHHHHTTTTTTSSSSSCCEEEEEEEEECTTSSEEEEEEE
T ss_pred             CCCC-EEEeeccEEECCCceEEEEcCCEEEEEECCCCceeeeccceEEEEEEECCCCCEEEEEEe
Confidence            9999 99997421    00           0100  0000  11234899999999999999865

>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}

Probab=99.97  E-value=3.5e-28  Score=209.00  Aligned_cols=246  Identities=24%  Similarity=0.366  Sum_probs=188.6

Q ss_pred             eeEEEEccCCCEEEEeeCCCcEEEEeecCCCceEEEEecCcccCeEEEEeeCCCCCCEEEEEeCCCeEEEEEcCCCCcee
Q 022111           14 VHDVAMDFYGKRLATASSDSSIKIIGLSNSASQHLATLKGHRGPVWQVAWAHPKFGSILASCSYDGQVIIWKEGNQNDWT   93 (302)
Q Consensus        14 v~~~~~s~~~~~l~s~~~d~~v~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~s~D~~i~iwd~~~~~~~~   93 (302)
                      ++.|+||+++ +||+| .|++|+|||+.++.......+.+|...|++++|+++  +++|++|+.|++|++||++++   .
T Consensus        28 ~~~l~WS~~~-~lAvg-~D~tV~iWd~~tg~~~~~~~~~~~~~~V~~v~~~~~--~~~l~sgs~Dg~v~iw~~~~~---~  100 (318)
T 4ggc_A           28 LNLVDWSSGN-VLAVA-LDNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKE--GNYLAVGTSSAEVQLWDVQQQ---K  100 (318)
T ss_dssp             CBCEEECTTS-EEEEE-ETTEEEEEETTTCCEEEEEECCSTTCCEEEEEECTT--SSEEEEEETTSEEEEEETTTT---E
T ss_pred             ceEEEECCCC-EEEEE-eCCEEEEEECCCCCEEEEEEecCCCCeEEEEEECCC--CCEEEEEECCCcEEEeecCCc---e
Confidence            5678999876 66665 699999999876544344455678889999999864  899999999999999999876   4


Q ss_pred             EEEEecCCCCCeeEEEecCCCCCcEEEEEecCCcEEEEEecCCCCeeeeeecccCCCCeEEEEeCCCCCCCceeecccCC
Q 022111           94 QAHTFNDHKSSVNSIAWAPHELGLSLACGSSDGNISVFTATADGGWDTTRIDQAHPVGVTSVSWAPAMAPGALVGLGLLD  173 (302)
Q Consensus        94 ~~~~~~~h~~~i~~l~~~pd~~~~~l~sg~~d~~v~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~  173 (302)
                      .+..+.+|...+.++.+.+    ..+++++.++.+++|+...... ....+ .+|...+..+.+.+.             
T Consensus       101 ~~~~~~~h~~~~~~~~~~~----~~l~s~~~~~~~~~~~~~~~~~-~~~~~-~~~~~~~~~~~~~~~-------------  161 (318)
T 4ggc_A          101 RLRNMTSHSARVGSLSWNS----YILSSGSRSGHIHHHDVRVAEH-HVATL-SGHSQEVCGLRWAPD-------------  161 (318)
T ss_dssp             EEEEEECCSSCEEEEEEET----TEEEEEETTSEEEEEETTSSSC-EEEEE-ECCSSCEEEEEECTT-------------
T ss_pred             eEEEecCccceEEEeecCC----CEEEEEecCCceEeeecCCCce-eEEEE-cCccCceEEEEEcCC-------------
Confidence            6778889999998887754    4899999999999998764432 22333 378888999999875             


Q ss_pred             CceeEEEeeCCCcEEEEEEecCccccccccccccCCCceeEEEeeCCCCCCccEEEEEecCCeEEEEEeccCCcceeeee
Q 022111          174 PVQKLASCGCDNTVKVWKMYNGIWKMDCFPALQMHSDWVRSVAWAPNLGLPKSTIASASQDGTVVIWTCAKEGEQWEGRV  253 (302)
Q Consensus       174 ~~~~l~s~~~D~~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~l~s~s~D~~i~iwd~~~~~~~~~~~~  253 (302)
                       +.+|++++.|++|++||+.++............|.+.|.+++++|+... .-.+++++.+++|++||.+....    ..
T Consensus       162 -~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-~~~~~~~~~~~~i~lwd~~~~~~----~~  235 (318)
T 4ggc_A          162 -GRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSN-VLATGGGTSDRHIRIWNVCSGAC----LS  235 (318)
T ss_dssp             -SSEEEEEETTSCEEEEESSCBTTBSCCSEEECCCCSCEEEEEECTTSTT-EEEEEECTTTCEEEEEETTTCCE----EE
T ss_pred             -CCEEEEEecCcceeEEECCCCcccccceeeecccCCceEEEEecCCCCc-EEEEEecCCCCEEEEEecccccc----cc
Confidence             3789999999999999998764333334455678899999999997521 12346778899999999875432    22


Q ss_pred             eccCCCcEEEEEEccCCCEEEEec--CC-ceEEeeecCCce
Q 022111          254 LKDFKTPVWSVSWSLTGNLLAVAD--AN-NVTLWKEAVDGE  291 (302)
Q Consensus       254 ~~~~~~~v~~~~~spdg~~la~~~--~d-~i~~w~~~~~~~  291 (302)
                      ...+...+..+.|+|+++.+++++  .| .|++|+......
T Consensus       236 ~~~~~~~v~~~~~~~~~~~~~~~sg~~d~~i~iwd~~~~~~  276 (318)
T 4ggc_A          236 AVDAHSQVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAK  276 (318)
T ss_dssp             EEECSSCEEEEEEETTTTEEEEEECTTTCCEEEEETTTCCE
T ss_pred             cccceeeeeeeeecccccceEEEEEcCCCEEEEEECCCCcE
Confidence            234567799999999998887664  45 699999865443

>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}

Probab=99.97  E-value=5.6e-30  Score=250.33  Aligned_cols=267  Identities=13%  Similarity=0.101  Sum_probs=193.9

Q ss_pred             cccccccceeEEEEccCCCEEEEeeCCCcEEEEeecCCCce--EEEE--ec-----CcccCeEEEEeeCCCCCCEEEEEe
Q 022111            6 IETGHEDTVHDVAMDFYGKRLATASSDSSIKIIGLSNSASQ--HLAT--LK-----GHRGPVWQVAWAHPKFGSILASCS   76 (302)
Q Consensus         6 ~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~lw~~~~~~~~--~~~~--~~-----~h~~~v~~v~~~~~~~~~~l~s~s   76 (302)
                      .+.||...+.+++|+|++++||||+.|++||+||+..+...  ....  +.     +|...|++|+|+|+  +++||+|+
T Consensus       430 ~l~G~~~~v~sv~~spdg~~laSgs~DgtVrlWd~~~g~~~~~~~~~~~l~~~~~~~h~~~V~svafspd--g~~LAsgs  507 (902)
T 2oaj_A          430 LLKGGVRTKRQKLPAEYGTAFITGHSNGSVRIYDASHGDIQDNASFEVNLSRTLNKAKELAVDKISFAAE--TLELAVSI  507 (902)
T ss_dssp             SCCCSBCCCCCCCCCSEEEEEEEEETTSEEEEEESSCCTTTTTBCEEEEHHHHTTCSSSCCEEEEEEETT--TTEEEEEE
T ss_pred             cccCCcCCCCcccccccCcEEEEecCCCcEEEEECCCccccCCceEEeechhhcCCCCCCceeEEEecCC--CCeEEEEe
Confidence            45688888888899999999999999999999998654211  1111  22     89999999999975  89999999


Q ss_pred             CCCeEEEEEcCCCCc------------------------------------------eeEEEEecCCCCCeeEEEecCCC
Q 022111           77 YDGQVIIWKEGNQND------------------------------------------WTQAHTFNDHKSSVNSIAWAPHE  114 (302)
Q Consensus        77 ~D~~i~iwd~~~~~~------------------------------------------~~~~~~~~~h~~~i~~l~~~pd~  114 (302)
                      .|++|+|||+.+...                                          ..++.++.+|.+.|++|+|+|| 
T Consensus       508 ~DgtV~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~h~~~V~svafSpd-  586 (902)
T 2oaj_A          508 ETGDVVLFKYEVNQFYSVENRPESGDLEMNFRRFSLNNTNGVLVDVRDRAPTGVRQGFMPSTAVHANKGKTSAINNSNI-  586 (902)
T ss_dssp             TTSCEEEEEEEECCC---------------CCSCCGGGSSCSEEECGGGCCTTCSEEEEEEEEECCCSCSEEEEEECBT-
T ss_pred             cCcEEEEEEecCccccCccccCCCcccceeeeeccccCCccccccccccCCCCCCCccceeEEEEcCCCcEEEEEecCC-
Confidence            999999999865421                                          1346778889999999999998 


Q ss_pred             CCcEEEEEecCCcEEEEEecCCCCeeeeee--c-ccCCCCeEEEEeC-----CCCCCCceeecccCCCceeEEEeeCCCc
Q 022111          115 LGLSLACGSSDGNISVFTATADGGWDTTRI--D-QAHPVGVTSVSWA-----PAMAPGALVGLGLLDPVQKLASCGCDNT  186 (302)
Q Consensus       115 ~~~~l~sg~~d~~v~~~~~~~~~~~~~~~~--~-~~h~~~v~~~~~~-----~~~~~~~~~~~~~~~~~~~l~s~~~D~~  186 (302)
                       | +||+|+.|++|+|||+..........+  . .+|...|++++|+     |++.           ++..|++|+.|++
T Consensus       587 -G-~lAsgs~D~tv~lwd~~~~~~~~~~~~~~~~~gh~~~V~sv~Fs~~~~~~Dg~-----------~~~~l~sgs~D~t  653 (902)
T 2oaj_A          587 -G-FVGIAYAAGSLMLIDRRGPAIIYMENIREISGAQSACVTCIEFVIMEYGDDGY-----------SSILMVCGTDMGE  653 (902)
T ss_dssp             -S-EEEEEETTSEEEEEETTTTEEEEEEEGGGTCSSCCCCEEEEEEEEEECTTSSS-----------EEEEEEEEETTSE
T ss_pred             -c-EEEEEeCCCcEEEEECCCCeEEEEeehhHhccccccceEEEEEEEEecCCCCC-----------cceEEEEEecCCc
Confidence             7 999999999999999753211110111  1 2788899999999     6531           2478999999999


Q ss_pred             EEEEEE---ecCccccccccccccC-----CCceeEEE-eeCCCC------------------CCccEEEEEecCCeEEE
Q 022111          187 VKVWKM---YNGIWKMDCFPALQMH-----SDWVRSVA-WAPNLG------------------LPKSTIASASQDGTVVI  239 (302)
Q Consensus       187 v~iwd~---~~~~~~~~~~~~~~~h-----~~~v~~v~-~~p~~~------------------~~~~~l~s~s~D~~i~i  239 (302)
                      |++||+   .++.    +...+.+|     .++|.+++ |+.+.+                  .++..|+++  +..|||
T Consensus       654 v~~wd~~p~~~g~----~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~l~~~--~~~ir~  727 (902)
T 2oaj_A          654 VITYKILPASGGK----FDVQLMDITNVTSKGPIHKIDAFSKETKSSCLATIPKMQNLSKGLCIPGIVLITG--FDDIRL  727 (902)
T ss_dssp             EEEEEEEECGGGC----EEEEEEEEEECCSSCCCCEEEEEETTTCCBCBCBHHHHHGGGGTCCCCEEEEEEC--SSEEEE
T ss_pred             EEEEEEecCCCCc----EEEEecCceecCCCCceEEEEeEecCCCCcccCCHHHHhccCCCCCCCeEEEEEe--ccceEE
Confidence            999999   4442    33344444     57888887 662211                  112333333  778999


Q ss_pred             EEeccCCcceeeeeeccCCCcEEEE---E------EccCCCEEEEecCC-ceEEeeecCCceEEEeee
Q 022111          240 WTCAKEGEQWEGRVLKDFKTPVWSV---S------WSLTGNLLAVADAN-NVTLWKEAVDGEWQQVSV  297 (302)
Q Consensus       240 wd~~~~~~~~~~~~~~~~~~~v~~~---~------~spdg~~la~~~~d-~i~~w~~~~~~~~~~~~~  297 (302)
                      |++.+.+.  .... .++...+.++   +      |+++|..|++...+ .|++|+...-+.......
T Consensus       728 ~~~~~~k~--~~k~-~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~~g~i~~~s~p~l~~~~~~~~  792 (902)
T 2oaj_A          728 ITLGKSKS--THKG-FKYPLAATGLSYISTVEKNNDRKNLTVIITLEINGHLRVFTIPDFKEQMSEHI  792 (902)
T ss_dssp             ECTTCCCE--EEEE-CSSCEEEEEEEEEEEECSSSCEEEEEEEEEEETTSEEEEEETTTCCEEEEEEC
T ss_pred             EeCccccc--eeeE-cccceeeeEEEEEEeccccccccCceEEEEEeCCCcEEEEECcchHHHhhccC
Confidence            99876421  1122 3334556666   6      88999999999998 799999876665555443

>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A

Probab=99.97  E-value=4.9e-29  Score=215.86  Aligned_cols=224  Identities=21%  Similarity=0.351  Sum_probs=172.9

Q ss_pred             ccccccceeEEEEcc--CCCEEEEeeCCCcEEEEeecCCCc-------eEEEEecCcccCeEEEEeeCCCCCCEEEEEeC
Q 022111            7 ETGHEDTVHDVAMDF--YGKRLATASSDSSIKIIGLSNSAS-------QHLATLKGHRGPVWQVAWAHPKFGSILASCSY   77 (302)
Q Consensus         7 ~~~h~~~v~~~~~s~--~~~~l~s~~~d~~v~lw~~~~~~~-------~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~s~   77 (302)
                      +.+|...|++++|++  ++++|++++.|++|++||+.....       +.+..+.+|...|.+++|+++..+++|++++.
T Consensus        53 ~~~~~~~v~~~~~~~~~d~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~  132 (351)
T 3f3f_A           53 WRAHDSSIVAIDWASPEYGRIIASASYDKTVKLWEEDPDQEECSGRRWNKLCTLNDSKGSLYSVKFAPAHLGLKLACLGN  132 (351)
T ss_dssp             EECCSSCEEEEEECCGGGCSEEEEEETTSCEEEEEECTTSCTTSSCSEEEEEEECCCSSCEEEEEECCGGGCSEEEEEET
T ss_pred             eccCCCcEEEEEEcCCCCCCEEEEEcCCCeEEEEecCCCcccccccCcceeeeecccCCceeEEEEcCCCCCcEEEEecC
Confidence            458999999999999  699999999999999999965321       45677889999999999986422789999999


Q ss_pred             CCeEEEEEcCCCCceeE------EE----EecCCCCCeeEEEecCCC-CCcEEEEEecCCcEEEEEecCCCCeeeeeecc
Q 022111           78 DGQVIIWKEGNQNDWTQ------AH----TFNDHKSSVNSIAWAPHE-LGLSLACGSSDGNISVFTATADGGWDTTRIDQ  146 (302)
Q Consensus        78 D~~i~iwd~~~~~~~~~------~~----~~~~h~~~i~~l~~~pd~-~~~~l~sg~~d~~v~~~~~~~~~~~~~~~~~~  146 (302)
                      |+.|++||+++......      ..    ....|...+.+++|+|+. .+..+++++.++.+.+|+.... .........
T Consensus       133 dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~  211 (351)
T 3f3f_A          133 DGILRLYDALEPSDLRSWTLTSEMKVLSIPPANHLQSDFCLSWCPSRFSPEKLAVSALEQAIIYQRGKDG-KLHVAAKLP  211 (351)
T ss_dssp             TCEEEEEECSSTTCTTCCEEEEEEESCSCCCSSCSCCCEEEEECCCSSSCCEEEEEETTEEEEEEECTTS-CEEEEEECC
T ss_pred             CCcEEEecCCChHHhccccccccccccccccCCcccceeEEEeccCCCCCcEEEEecCCCcEEEEccCCC-ceeeeeecC
Confidence            99999999876532110      01    112578899999999962 2458999999999977665433 332222223


Q ss_pred             cCCCCeEEEEeCCCCCCCceeecccCCCceeEEEeeCCCcEEEEEEecCcc-----------------------------
Q 022111          147 AHPVGVTSVSWAPAMAPGALVGLGLLDPVQKLASCGCDNTVKVWKMYNGIW-----------------------------  197 (302)
Q Consensus       147 ~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~D~~v~iwd~~~~~~-----------------------------  197 (302)
                      +|...|.+++|+|++..          ...+|++|+.|+.|++||++.+..                             
T Consensus       212 ~h~~~i~~~~~~p~~~~----------~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  281 (351)
T 3f3f_A          212 GHKSLIRSISWAPSIGR----------WYQLIATGCKDGRIRIFKITEKLSPLASEESLTNSNMFDNSADVDMDAQGRSD  281 (351)
T ss_dssp             CCCSCEEEEEECCCSSC----------SSEEEEEEETTSCEEEEEEEECC------------------------------
T ss_pred             CCCcceeEEEECCCCCC----------cceEEEEEcCCCeEEEEeCCCCcCccccCCcccceeccCCCcccccccccccc
Confidence            78999999999986310          016899999999999999986411                             


Q ss_pred             -------------ccccccccccCCCceeEEEeeCCCCCCccEEEEEecCCeEEEEEeccC
Q 022111          198 -------------KMDCFPALQMHSDWVRSVAWAPNLGLPKSTIASASQDGTVVIWTCAKE  245 (302)
Q Consensus       198 -------------~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~l~s~s~D~~i~iwd~~~~  245 (302)
                                   ....+..+.+|...|++++|+|++    .+|++++.|+.|+|||+...
T Consensus       282 ~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~----~~l~s~~~dg~v~iw~~~~~  338 (351)
T 3f3f_A          282 SNTEEKAELQSNLQVELLSEHDDHNGEVWSVSWNLTG----TILSSAGDDGKVRLWKATYS  338 (351)
T ss_dssp             ---------CCSEEEEEEEEECTTSSCEEEEEECSSS----CCEEEEETTSCEEEEEECTT
T ss_pred             cccceeeeecccccccEEEEEecccccEEEEEEcCCC----CEEEEecCCCcEEEEecCcC
Confidence                         113445677899999999999985    68999999999999999754

>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}

Probab=99.97  E-value=6.3e-29  Score=239.03  Aligned_cols=223  Identities=24%  Similarity=0.336  Sum_probs=178.7

Q ss_pred             cccccccceeEEEEccC--CCEEEEeeCCCcEEEEeecCCCceEEEEecCcccCeEEEEeeCCCCCCEEEEEeCCCeEEE
Q 022111            6 IETGHEDTVHDVAMDFY--GKRLATASSDSSIKIIGLSNSASQHLATLKGHRGPVWQVAWAHPKFGSILASCSYDGQVII   83 (302)
Q Consensus         6 ~~~~h~~~v~~~~~s~~--~~~l~s~~~d~~v~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~s~D~~i~i   83 (302)
                      .+.+|.+.|++++|+++  +++|++|+.||+|++||+.......+..+.+|...|++++|+++..++++++|+.|++|++
T Consensus        48 ~l~~h~~~V~~l~~s~~~~~~~l~s~s~Dg~I~vwd~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~v  127 (753)
T 3jro_A           48 TLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSV  127 (753)
T ss_dssp             EECCCSSCEEEEEECCTTSCSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEE
T ss_pred             eccCCcCceEEEEecCCCCCCEEEEEeCCCeEEEEECCCCcccccccccCCCCCeEEEEECCCCCCCEEEEEeCCCcEEE
Confidence            46689999999999988  8999999999999999998754446777889999999999986422789999999999999


Q ss_pred             EEcCCCCceeEEEEecCCCCCeeEEEecCCC-----------CCcEEEEEecCCcEEEEEecCCCCe-eeeeecccCCCC
Q 022111           84 WKEGNQNDWTQAHTFNDHKSSVNSIAWAPHE-----------LGLSLACGSSDGNISVFTATADGGW-DTTRIDQAHPVG  151 (302)
Q Consensus        84 wd~~~~~~~~~~~~~~~h~~~i~~l~~~pd~-----------~~~~l~sg~~d~~v~~~~~~~~~~~-~~~~~~~~h~~~  151 (302)
                      ||++.... .....+.+|...|.+++|+|..           ++..+++|+.|+.|++||++..... .......+|...
T Consensus       128 wdl~~~~~-~~~~~~~~~~~~v~~l~~~p~~~~~~~~~~~~~d~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~h~~~  206 (753)
T 3jro_A          128 VEFKENGT-TSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDW  206 (753)
T ss_dssp             EECCSSSC-CCCEEEECCSSCEEEEEECCCC---------CGGGCCEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSC
T ss_pred             EEeecCCC-cceeEeecCCCceEEEEecCcccccccccccCCCCCEEEEEECCCeEEEEeccCCcccceeeeeecCCCCc
Confidence            99976532 2334567799999999999941           1568999999999999999865322 222222378999


Q ss_pred             eEEEEeCCCCCCCceeecccCCCceeEEEeeCCCcEEEEEEecCcccc-ccccccccCCCceeEEEeeCCCCCCccEEEE
Q 022111          152 VTSVSWAPAMAPGALVGLGLLDPVQKLASCGCDNTVKVWKMYNGIWKM-DCFPALQMHSDWVRSVAWAPNLGLPKSTIAS  230 (302)
Q Consensus       152 v~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~D~~v~iwd~~~~~~~~-~~~~~~~~h~~~v~~v~~~p~~~~~~~~l~s  230 (302)
                      |.+++|+|+..           .+..|++|+.|+.|++||+.++.... .......+|...|.+++|+|++    ..|++
T Consensus       207 V~~l~~sp~~~-----------~~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg----~~l~s  271 (753)
T 3jro_A          207 VRDVAWSPTVL-----------LRSYLASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSG----NVLAL  271 (753)
T ss_dssp             EEEEEECCCCS-----------SSEEEEEEESSSCEEEEEESSSSSCCBCCBSSSSCCSSCCCCEEECTTT----CCEEE
T ss_pred             EEEEEeccCCC-----------CCCEEEEEecCCEEEEecCCCCCCcceeEEeccCCCCCceEEEEEcCCC----CEEEE
Confidence            99999998620           03789999999999999998753211 1233446689999999999986    67999


Q ss_pred             EecCCeEEEEEecc
Q 022111          231 ASQDGTVVIWTCAK  244 (302)
Q Consensus       231 ~s~D~~i~iwd~~~  244 (302)
                      ++.||.|++|+++.
T Consensus       272 ~s~Dg~I~vwd~~~  285 (753)
T 3jro_A          272 SGGDNKVTLWKENL  285 (753)
T ss_dssp             ECSSSCEECCBCCS
T ss_pred             EcCCCEEEEEecCC
Confidence            99999999999874

>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B

Probab=99.97  E-value=1.1e-28  Score=222.42  Aligned_cols=219  Identities=24%  Similarity=0.380  Sum_probs=175.7

Q ss_pred             cccccccceeEEEEccCCC-EEEEeeCCCcEEEEeecCCCc-----eEEEEecCcccCeEEEEeeCCCCCCEEEEEeCCC
Q 022111            6 IETGHEDTVHDVAMDFYGK-RLATASSDSSIKIIGLSNSAS-----QHLATLKGHRGPVWQVAWAHPKFGSILASCSYDG   79 (302)
Q Consensus         6 ~~~~h~~~v~~~~~s~~~~-~l~s~~~d~~v~lw~~~~~~~-----~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~s~D~   79 (302)
                      .+.+|...|++++|+|+++ +|++|+.||+|++|++.....     .....+.+|...|.+++|++. .+.+|++++.|+
T Consensus       176 ~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~-~~~~l~s~~~dg  254 (430)
T 2xyi_A          176 RLRGHQKEGYGLSWNPNLNGYLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLL-HESLFGSVADDQ  254 (430)
T ss_dssp             EEECCSSCCCCEEECTTSTTEEEEECTTSCEEEEETTSCCBGGGEEECSEEECCCSSCEEEEEECSS-CTTEEEEEETTS
T ss_pred             EecCCCCCeEEEEeCCCCCCeEEEEeCCCeEEEEeCCCCCCCCceeccceeecCCCCCEeeeEEeCC-CCCEEEEEeCCC
Confidence            3568999999999999988 999999999999999865221     124567789999999999863 478999999999


Q ss_pred             eEEEEEcCCCCceeEEEEecCCCCCeeEEEecCCCCCcEEEEEecCCcEEEEEecCCCCeeeeeecccCCCCeEEEEeCC
Q 022111           80 QVIIWKEGNQNDWTQAHTFNDHKSSVNSIAWAPHELGLSLACGSSDGNISVFTATADGGWDTTRIDQAHPVGVTSVSWAP  159 (302)
Q Consensus        80 ~i~iwd~~~~~~~~~~~~~~~h~~~i~~l~~~pd~~~~~l~sg~~d~~v~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~  159 (302)
                      .|++||++..........+..|...|++++|+|+. ..++++|+.|+.|++||++.... ....+. .|...|.++.|+|
T Consensus       255 ~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~p~~-~~~l~tg~~dg~v~vwd~~~~~~-~~~~~~-~h~~~v~~i~~sp  331 (430)
T 2xyi_A          255 KLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYS-EFILATGSADKTVALWDLRNLKL-KLHSFE-SHKDEIFQVQWSP  331 (430)
T ss_dssp             EEEEEETTCSCSSSCSEEEECCSSCEEEEEECSSC-TTEEEEEETTSEEEEEETTCTTS-CSEEEE-CCSSCEEEEEECS
T ss_pred             eEEEEECCCCCCCcceeEeecCCCCeEEEEeCCCC-CCEEEEEeCCCeEEEEeCCCCCC-CeEEee-cCCCCEEEEEECC
Confidence            99999998653223555677899999999999983 24799999999999999985332 223333 6888999999999


Q ss_pred             CCCCCceeecccCCCceeEEEeeCCCcEEEEEEecCccc----------cccccccccCCCceeEEEeeCCCCCCccEEE
Q 022111          160 AMAPGALVGLGLLDPVQKLASCGCDNTVKVWKMYNGIWK----------MDCFPALQMHSDWVRSVAWAPNLGLPKSTIA  229 (302)
Q Consensus       160 ~~~~~~~~~~~~~~~~~~l~s~~~D~~v~iwd~~~~~~~----------~~~~~~~~~h~~~v~~v~~~p~~~~~~~~l~  229 (302)
                      ++             ..+|++++.|+.|+|||+......          ...+..+.+|...|++++|+|++   ...|+
T Consensus       332 ~~-------------~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~---~~~l~  395 (430)
T 2xyi_A          332 HN-------------ETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNE---PWIIC  395 (430)
T ss_dssp             SC-------------TTEEEEEETTSCCEEEEGGGTTCCCCHHHHHHCCTTEEEECCCCSSCEEEEEECSSS---TTEEE
T ss_pred             CC-------------CCEEEEEeCCCcEEEEeCCCCccccCccccccCCcceEEEcCCCCCCceEEEECCCC---CCEEE
Confidence            64             257999999999999999762110          13445667899999999999986   23899


Q ss_pred             EEecCCeEEEEEecc
Q 022111          230 SASQDGTVVIWTCAK  244 (302)
Q Consensus       230 s~s~D~~i~iwd~~~  244 (302)
                      +++.|+.|+||++..
T Consensus       396 s~s~dg~i~iw~~~~  410 (430)
T 2xyi_A          396 SVSEDNIMQVWQMAE  410 (430)
T ss_dssp             EEETTSEEEEEEECH
T ss_pred             EEECCCCEEEeEccc
Confidence            999999999999864

>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}

Probab=99.97  E-value=4.3e-28  Score=215.18  Aligned_cols=248  Identities=16%  Similarity=0.251  Sum_probs=164.9

Q ss_pred             cccccceeEEEEcc-CCCEEEEeeCCCcEEEEeecCCCceEEEEecCcccCeEEEEeeCCC-CCCEEEEEeCCCeEEEEE
Q 022111            8 TGHEDTVHDVAMDF-YGKRLATASSDSSIKIIGLSNSASQHLATLKGHRGPVWQVAWAHPK-FGSILASCSYDGQVIIWK   85 (302)
Q Consensus         8 ~~h~~~v~~~~~s~-~~~~l~s~~~d~~v~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~~-~~~~l~s~s~D~~i~iwd   85 (302)
                      .+|...|++++|+| ++++|++++.|+.|++|++...  +....+. |...+.+++|.+.. ++.++++++.|+.|++||
T Consensus        96 ~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~--~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d  172 (408)
T 4a11_B           96 DVHRYSVETVQWYPHDTGMFTSSSFDKTLKVWDTNTL--QTADVFN-FEETVYSHHMSPVSTKHCLVAVGTRGPKVQLCD  172 (408)
T ss_dssp             TCCSSCEEEEEECTTCTTCEEEEETTSEEEEEETTTT--EEEEEEE-CSSCEEEEEECSSCSSCCEEEEEESSSSEEEEE
T ss_pred             ccCCCcEEEEEEccCCCcEEEEEeCCCeEEEeeCCCC--ccceecc-CCCceeeeEeecCCCCCcEEEEEcCCCeEEEEe
Confidence            36999999999999 7789999999999999998753  3444443 67789999997642 345899999999999999


Q ss_pred             cCCCCceeEEEEecCCCCCeeEEEecCCCCCcEEEEEecCCcEEEEEecCCCCeeeeee--------------cccCCCC
Q 022111           86 EGNQNDWTQAHTFNDHKSSVNSIAWAPHELGLSLACGSSDGNISVFTATADGGWDTTRI--------------DQAHPVG  151 (302)
Q Consensus        86 ~~~~~~~~~~~~~~~h~~~i~~l~~~pd~~~~~l~sg~~d~~v~~~~~~~~~~~~~~~~--------------~~~h~~~  151 (302)
                      +++..   ....+..|...|.+++|+|+. ..++++|+.|+.|++||++..... ...+              ...|...
T Consensus       173 ~~~~~---~~~~~~~~~~~v~~~~~~~~~-~~ll~~~~~dg~i~i~d~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~  247 (408)
T 4a11_B          173 LKSGS---CSHILQGHRQEILAVSWSPRY-DYILATASADSRVKLWDVRRASGC-LITLDQHNGKKSQAVESANTAHNGK  247 (408)
T ss_dssp             SSSSC---CCEEECCCCSCEEEEEECSSC-TTEEEEEETTSCEEEEETTCSSCC-SEECCTTTTCSCCCTTTSSCSCSSC
T ss_pred             CCCcc---eeeeecCCCCcEEEEEECCCC-CcEEEEEcCCCcEEEEECCCCCcc-cccccccccccceeeccccccccCc
Confidence            97653   456788899999999999983 236999999999999998754311 0111              1357788


Q ss_pred             eEEEEeCCCCCCCceeecccCCCceeEEEeeCCCcEEEEEEecCccc---------------------------------
Q 022111          152 VTSVSWAPAMAPGALVGLGLLDPVQKLASCGCDNTVKVWKMYNGIWK---------------------------------  198 (302)
Q Consensus       152 v~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~D~~v~iwd~~~~~~~---------------------------------  198 (302)
                      |.+++|+|++              .+|++++.|+.|++||+.++...                                 
T Consensus       248 v~~~~~~~~~--------------~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  313 (408)
T 4a11_B          248 VNGLCFTSDG--------------LHLLTVGTDNRMRLWNSSNGENTLVNYGKVCNNSKKGLKFTVSCGCSSEFVFVPYG  313 (408)
T ss_dssp             EEEEEECTTS--------------SEEEEEETTSCEEEEETTTCCBCCCCCCCCCCCCSSCCCCEECCSSSSCEEEEEET
T ss_pred             eeEEEEcCCC--------------CEEEEecCCCeEEEEECCCCccceeccccccccccccceeEEecCCCceEEEEecC
Confidence            9999999864              56777777777777776543210                                 


Q ss_pred             ----------cccccccccCCCceeEEEeeCCCCCCccEEEEEecCCeEEEEEeccCCcceeeeeeccCCCcEEEEEEcc
Q 022111          199 ----------MDCFPALQMHSDWVRSVAWAPNLGLPKSTIASASQDGTVVIWTCAKEGEQWEGRVLKDFKTPVWSVSWSL  268 (302)
Q Consensus       199 ----------~~~~~~~~~h~~~v~~v~~~p~~~~~~~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp  268 (302)
                                ...+..+.+|...|.+++|+|++    .+|++++.||.|++||++....      ............++|
T Consensus       314 ~~i~v~d~~~~~~~~~~~~~~~~v~~~~~s~~~----~~l~s~~~dg~i~iw~~~~~~~------~~~~~~~~~~~~~~~  383 (408)
T 4a11_B          314 STIAVYTVYSGEQITMLKGHYKTVDCCVFQSNF----QELYSGSRDCNILAWVPSLYEP------VPDDDETTTKSQLNP  383 (408)
T ss_dssp             TEEEEEETTTCCEEEEECCCSSCEEEEEEETTT----TEEEEEETTSCEEEEEECC------------------------
T ss_pred             CEEEEEECcCCcceeeeccCCCeEEEEEEcCCC----CEEEEECCCCeEEEEeCCCCCc------cCCCCceEecccccc
Confidence                      12344567899999999999995    7899999999999999976421      111111112233444


Q ss_pred             CC-CEEEEecCC-ceEEeeec
Q 022111          269 TG-NLLAVADAN-NVTLWKEA  287 (302)
Q Consensus       269 dg-~~la~~~~d-~i~~w~~~  287 (302)
                      .. ..++..+++ .+++|+..
T Consensus       384 ~~~~~~~~~~~~~~~~~W~~~  404 (408)
T 4a11_B          384 AFEDAWSSSDEEGGTSAWSHP  404 (408)
T ss_dssp             ---------------------
T ss_pred             ccceeecccCccCceeecCCc
Confidence            22 333444445 79999854

>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A

Probab=99.97  E-value=5.3e-29  Score=213.87  Aligned_cols=203  Identities=13%  Similarity=0.154  Sum_probs=143.2

Q ss_pred             cccceeEEEEccC----CCEEEEeeC--------------------CCcEEEEeecCCCceEEEEecCcccCeEEEEeeC
Q 022111           10 HEDTVHDVAMDFY----GKRLATASS--------------------DSSIKIIGLSNSASQHLATLKGHRGPVWQVAWAH   65 (302)
Q Consensus        10 h~~~v~~~~~s~~----~~~l~s~~~--------------------d~~v~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~   65 (302)
                      |...|+.++|+||    ++++++++.                    |++|++|+++. .++.+..+.+|...++.++|++
T Consensus       110 ~~~~v~sla~spd~~~~~~~l~s~g~~~~v~~l~~g~lv~ss~~g~d~~V~~~~~s~-dG~~~~s~~~~~~~v~~l~fs~  188 (356)
T 2w18_A          110 EIREIRALFCSSDDESEKQVLLKSGNIKAVLGLTKRRLVSSSGTLSDQQVEVMTFAE-DGGGKENQFLMPPEETILTFAE  188 (356)
T ss_dssp             SEEEEEEECC------CCEEEEEEEEEEEEEEETTTEEEEEESSSTTCEEEEEEECT-TSCEEEEEEECCCSSCEEEEEE
T ss_pred             cccceEEEEECCCccccccEEEeCCCeEEEEecCCCcEEEecccCCCCcEEEEEECC-CCceeeeeccCCCceeeEEeec
Confidence            3456777777887    677776553                    99999999854 2456677788999999999987


Q ss_pred             -CCCCCEEEEEeCCCeEEEEEcCCCCceeEEEEecCCC---CCeeEEEecCCCCCcEE------------EEEecCCcEE
Q 022111           66 -PKFGSILASCSYDGQVIIWKEGNQNDWTQAHTFNDHK---SSVNSIAWAPHELGLSL------------ACGSSDGNIS  129 (302)
Q Consensus        66 -~~~~~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~h~---~~i~~l~~~pd~~~~~l------------~sg~~d~~v~  129 (302)
                       +.++++|||++.|++|+|||++++.   +++++.+|.   ..+.+++|+|+  +.++            ++|+.|++|+
T Consensus       189 ~~g~~~~LaSgS~D~TIkIWDl~TGk---~l~tL~g~~~~v~~v~~vafSpd--G~~lvs~s~~~~~w~laSGs~D~tIk  263 (356)
T 2w18_A          189 VQGMQEALLGTTIMNNIVIWNLKTGQ---LLKKMHIDDSYQASVCHKAYSEM--GLLFIVLSHPCAKESESLRSPVFQLI  263 (356)
T ss_dssp             EETSTTEEEEEETTSEEEEEETTTCC---EEEEEECCC---CCCEEEEEEET--TEEEEEEC------------CCEEEE
T ss_pred             cCCCCceEEEecCCCcEEEEECCCCc---EEEEEcCCCcceeeeEEEEECCC--CCEEEEeccCCCcceeeccCCCcEEE
Confidence             4457899999999999999998763   667776543   46777899997  5554            6788999999


Q ss_pred             EEEecCCCCeeeee--ecccCCCCeEEEEeCCCCCCCceeecccCCCceeEEEeeCCCcEEEEEEecCcccccccccccc
Q 022111          130 VFTATADGGWDTTR--IDQAHPVGVTSVSWAPAMAPGALVGLGLLDPVQKLASCGCDNTVKVWKMYNGIWKMDCFPALQM  207 (302)
Q Consensus       130 ~~~~~~~~~~~~~~--~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~D~~v~iwd~~~~~~~~~~~~~~~~  207 (302)
                      +|+..+........  +..+|...+.+..++                +..+|+++.|++|+|||+.++    +++.++.+
T Consensus       264 lWd~~tgk~l~v~~~~~p~Gh~~~~lsg~~s----------------g~~lASgS~DgTIkIWDl~tG----k~l~tL~g  323 (356)
T 2w18_A          264 VINPKTTLSVGVMLYCLPPGQAGRFLEGDVK----------------DHCAAAILTSGTIAIWDLLLG----QCTALLPP  323 (356)
T ss_dssp             EEETTTTEEEEEEEECCCTTCCCCEEEEEEE----------------TTEEEEEETTSCEEEEETTTC----SEEEEECC
T ss_pred             EEECCCCEEEEEEEeeccCCCcceeEccccC----------------CCEEEEEcCCCcEEEEECCCC----cEEEEecC
Confidence            99876432211111  112343332222211                357999999999999999887    46678889


Q ss_pred             CCCcee-EEEeeCCCCCCccEEEEEecCCeEEEEEe
Q 022111          208 HSDWVR-SVAWAPNLGLPKSTIASASQDGTVVIWTC  242 (302)
Q Consensus       208 h~~~v~-~v~~~p~~~~~~~~l~s~s~D~~i~iwd~  242 (302)
                      |...+. +++|+||+    ++|+||+.|++|||||+
T Consensus       324 H~~~vvs~vafSPDG----~~LaSGS~D~TIklWd~  355 (356)
T 2w18_A          324 VSDQHWSFVKWSGTD----SHLLAGQKDGNIFVYHY  355 (356)
T ss_dssp             C--CCCCEEEECSSS----SEEEEECTTSCEEEEEE
T ss_pred             CCCCeEEEEEECCCC----CEEEEEECCCcEEEecC
Confidence            987655 68999995    78999999999999986

>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}

Probab=99.96  E-value=8.3e-28  Score=210.17  Aligned_cols=239  Identities=10%  Similarity=0.067  Sum_probs=170.8

Q ss_pred             cceeEEEEccCCCEEEEeeCCCcEEEEeecCC-------CceEEEEe-cCcccCeEEEEeeCCCCCCEEEEEeCCCeEEE
Q 022111           12 DTVHDVAMDFYGKRLATASSDSSIKIIGLSNS-------ASQHLATL-KGHRGPVWQVAWAHPKFGSILASCSYDGQVII   83 (302)
Q Consensus        12 ~~v~~~~~s~~~~~l~s~~~d~~v~lw~~~~~-------~~~~~~~~-~~h~~~v~~v~~~~~~~~~~l~s~s~D~~i~i   83 (302)
                      ..|.++.|+|+   +++++.|++|++|+....       ..+.+..+ .+|.+.|.+++|++..++++|++++.|++|++
T Consensus        77 ~~v~~~~~~~~---~~s~s~D~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~dg~i~~  153 (343)
T 3lrv_A           77 PNPRTGGEHPA---IISRGPCNRLLLLYPGNQITILDSKTNKVLREIEVDSANEIIYMYGHNEVNTEYFIWADNRGTIGF  153 (343)
T ss_dssp             ECCCTTCCCCS---EEEECSTTEEEEEETTTEEEEEETTTCCEEEEEECCCSSCEEEEECCC---CCEEEEEETTCCEEE
T ss_pred             CCceeeeeCCc---eEEecCCCeEEEEEccCceEEeecCCcceeEEeecCCCCCEEEEEcCCCCCCCEEEEEeCCCcEEE
Confidence            45666677776   999999999999976421       12223333 36778999999986223789999999999999


Q ss_pred             EEcCCCCceeEEEEe-cCCCCCeeEEEecCCCCCcEEEEEecCCcEEEEEecCCCCeeeeeecccCCCCeEEEEeCCCCC
Q 022111           84 WKEGNQNDWTQAHTF-NDHKSSVNSIAWAPHELGLSLACGSSDGNISVFTATADGGWDTTRIDQAHPVGVTSVSWAPAMA  162 (302)
Q Consensus        84 wd~~~~~~~~~~~~~-~~h~~~i~~l~~~pd~~~~~l~sg~~d~~v~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~  162 (302)
                      ||+++..   ....+ ..|...|.+++|+|+  +.+|++|+.|+.|++||++..... ...+...|...|.+++|+|++ 
T Consensus       154 wd~~~~~---~~~~~~~~~~~~i~~~~~~pd--g~~lasg~~dg~i~iwd~~~~~~~-~~~~~~~h~~~v~~l~fs~~g-  226 (343)
T 3lrv_A          154 QSYEDDS---QYIVHSAKSDVEYSSGVLHKD--SLLLALYSPDGILDVYNLSSPDQA-SSRFPVDEEAKIKEVKFADNG-  226 (343)
T ss_dssp             EESSSSC---EEEEECCCSSCCCCEEEECTT--SCEEEEECTTSCEEEEESSCTTSC-CEECCCCTTSCEEEEEECTTS-
T ss_pred             EECCCCc---EEEEEecCCCCceEEEEECCC--CCEEEEEcCCCEEEEEECCCCCCC-ccEEeccCCCCEEEEEEeCCC-
Confidence            9998764   33333 345668999999998  679999999999999999865432 123432489999999999864 


Q ss_pred             CCceeecccCCCceeEEEeeCCCcEEEEEEecCccccccccccccCCCcee--EEEeeCCCCCCccEEEEEec-CCeEEE
Q 022111          163 PGALVGLGLLDPVQKLASCGCDNTVKVWKMYNGIWKMDCFPALQMHSDWVR--SVAWAPNLGLPKSTIASASQ-DGTVVI  239 (302)
Q Consensus       163 ~~~~~~~~~~~~~~~l~s~~~D~~v~iwd~~~~~~~~~~~~~~~~h~~~v~--~v~~~p~~~~~~~~l~s~s~-D~~i~i  239 (302)
                                   .+|++++ |+.|++||+++.... ..+..+..|...+.  +++|+|++    .+|++++. |+.++|
T Consensus       227 -------------~~l~s~~-~~~v~iwd~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~g----~~l~~~s~~d~~i~v  287 (343)
T 3lrv_A          227 -------------YWMVVEC-DQTVVCFDLRKDVGT-LAYPTYTIPEFKTGTVTYDIDDSG----KNMIAYSNESNSLTI  287 (343)
T ss_dssp             -------------SEEEEEE-SSBEEEEETTSSTTC-BSSCCCBC-----CCEEEEECTTS----SEEEEEETTTTEEEE
T ss_pred             -------------CEEEEEe-CCeEEEEEcCCCCcc-eeecccccccccccceEEEECCCC----CEEEEecCCCCcEEE
Confidence                         7899999 559999999876321 12223333555555  69999985    78999988 999999


Q ss_pred             EEeccCCcceeeeeeccCCCcEEEEEEcc---CCCEEEEecCC-ceEEeee
Q 022111          240 WTCAKEGEQWEGRVLKDFKTPVWSVSWSL---TGNLLAVADAN-NVTLWKE  286 (302)
Q Consensus       240 wd~~~~~~~~~~~~~~~~~~~v~~~~~sp---dg~~la~~~~d-~i~~w~~  286 (302)
                      |++......|..       .++..++|+|   +++.|++++.| .+.++-.
T Consensus       288 ~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~l~~~~~d~~~~~~~~  331 (343)
T 3lrv_A          288 YKFDKKTKNWTK-------DEESALCLQSDTADFTDMDVVCGDGGIAAILK  331 (343)
T ss_dssp             EEECTTTCSEEE-------EEEEECCC----CCCCEEEEEEETTEEEEEEE
T ss_pred             EEEcccccceEe-------cCceeEecCccccccceeEEEecCCceEEEEe
Confidence            999755433321       4677888988   88888888777 6777654

>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}

Probab=99.96  E-value=1.2e-26  Score=202.94  Aligned_cols=214  Identities=17%  Similarity=0.239  Sum_probs=172.2

Q ss_pred             EEEEecCcccCeEEEEeeCCCCCCEEEEEeCCCeEEEEEcCCCCceeEEEEecCCCCCeeEEEecCCCCCcEEEEEecCC
Q 022111           47 HLATLKGHRGPVWQVAWAHPKFGSILASCSYDGQVIIWKEGNQNDWTQAHTFNDHKSSVNSIAWAPHELGLSLACGSSDG  126 (302)
Q Consensus        47 ~~~~~~~h~~~v~~v~~~~~~~~~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~h~~~i~~l~~~pd~~~~~l~sg~~d~  126 (302)
                      ....+.+|.+.|++++|+++  +++|++++.|+.|++||+.+.   .....+.+|...|.+++|+|+  +.+|++++.|+
T Consensus        24 ~~~~l~~h~~~v~~~~~s~~--~~~l~~~~~dg~i~vwd~~~~---~~~~~~~~h~~~v~~~~~~~~--~~~l~s~~~dg   96 (369)
T 3zwl_B           24 KAIKLTGHERPLTQVKYNKE--GDLLFSCSKDSSASVWYSLNG---ERLGTLDGHTGTIWSIDVDCF--TKYCVTGSADY   96 (369)
T ss_dssp             EEEEEECCSSCEEEEEECTT--SCEEEEEESSSCEEEEETTTC---CEEEEECCCSSCEEEEEECTT--SSEEEEEETTT
T ss_pred             ccEEEEEeeceEEEEEEcCC--CCEEEEEeCCCEEEEEeCCCc---hhhhhhhhcCCcEEEEEEcCC--CCEEEEEeCCC
Confidence            44568899999999999864  889999999999999998765   366788899999999999997  66999999999


Q ss_pred             cEEEEEecCCCCeeeeeecccCCCCeEEEEeCCCCCCCceeecccCCCceeEEEeeCC-----CcEEEEEEecCcccc--
Q 022111          127 NISVFTATADGGWDTTRIDQAHPVGVTSVSWAPAMAPGALVGLGLLDPVQKLASCGCD-----NTVKVWKMYNGIWKM--  199 (302)
Q Consensus       127 ~v~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~D-----~~v~iwd~~~~~~~~--  199 (302)
                      .|++||+......  ..+  .+...+.++.|+|++              ..|++++.+     +.|++||+.......  
T Consensus        97 ~i~iwd~~~~~~~--~~~--~~~~~v~~~~~~~~~--------------~~l~~~~~~~~~~~g~i~~~d~~~~~~~~~~  158 (369)
T 3zwl_B           97 SIKLWDVSNGQCV--ATW--KSPVPVKRVEFSPCG--------------NYFLAILDNVMKNPGSINIYEIERDSATHEL  158 (369)
T ss_dssp             EEEEEETTTCCEE--EEE--ECSSCEEEEEECTTS--------------SEEEEEECCBTTBCCEEEEEEEEECTTTCCE
T ss_pred             eEEEEECCCCcEE--EEe--ecCCCeEEEEEccCC--------------CEEEEecCCccCCCCEEEEEEecCCccceee
Confidence            9999998754322  222  267789999999864              789999888     999999998653210  


Q ss_pred             -----ccccccccCCC--ceeEEEeeCCCCCCccEEEEEecCCeEEEEEeccCCcceeeeeeccCCCcEEEEEEccCCCE
Q 022111          200 -----DCFPALQMHSD--WVRSVAWAPNLGLPKSTIASASQDGTVVIWTCAKEGEQWEGRVLKDFKTPVWSVSWSLTGNL  272 (302)
Q Consensus       200 -----~~~~~~~~h~~--~v~~v~~~p~~~~~~~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~  272 (302)
                           .....+..|..  .+.+++|+|++    +.|++++.|+.|++||++.....  ......+...|.+++|+|++++
T Consensus       159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~l~~~~~dg~i~i~d~~~~~~~--~~~~~~~~~~v~~~~~~~~~~~  232 (369)
T 3zwl_B          159 TKVSEEPIHKIITHEGLDAATVAGWSTKG----KYIIAGHKDGKISKYDVSNNYEY--VDSIDLHEKSISDMQFSPDLTY  232 (369)
T ss_dssp             EEECSSCSEEEECCTTCCCEEEEEECGGG----CEEEEEETTSEEEEEETTTTTEE--EEEEECCSSCEEEEEECTTSSE
T ss_pred             cccccceeeeccCCcCccceeEEEEcCCC----CEEEEEcCCCEEEEEECCCCcEe--EEEEecCCCceeEEEECCCCCE
Confidence                 12233445666  89999999985    78999999999999999863221  2334567789999999999999


Q ss_pred             EEEecCC-ceEEeeecCCce
Q 022111          273 LAVADAN-NVTLWKEAVDGE  291 (302)
Q Consensus       273 la~~~~d-~i~~w~~~~~~~  291 (302)
                      |++++.| .|++|+......
T Consensus       233 l~~~~~d~~i~v~d~~~~~~  252 (369)
T 3zwl_B          233 FITSSRDTNSFLVDVSTLQV  252 (369)
T ss_dssp             EEEEETTSEEEEEETTTCCE
T ss_pred             EEEecCCceEEEEECCCCce
Confidence            9999888 799999865443

>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A

Probab=99.96  E-value=8.4e-27  Score=200.26  Aligned_cols=246  Identities=13%  Similarity=0.062  Sum_probs=156.0

Q ss_pred             EEEEeeCCCcEEEEeecCC-CceEEEEecCcccCeEEEEeeCC-----------------------CC----CCEEEEEe
Q 022111           25 RLATASSDSSIKIIGLSNS-ASQHLATLKGHRGPVWQVAWAHP-----------------------KF----GSILASCS   76 (302)
Q Consensus        25 ~l~s~~~d~~v~lw~~~~~-~~~~~~~~~~h~~~v~~v~~~~~-----------------------~~----~~~l~s~s   76 (302)
                      .+++++ ..+|+||+.... ..+.+.++..|+.+|..|.+.|+                       .+    ++++++++
T Consensus        56 ~~~~~~-~~~v~lw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~v~sla~spd~~~~~~~l~s~g  134 (356)
T 2w18_A           56 CIITAC-EDVVSLWKALDAWQWEKLYTWHFAEVPVLQIVPVPDVYNLVCVALGNLEIREIRALFCSSDDESEKQVLLKSG  134 (356)
T ss_dssp             EEEEEE-SSEEEEEEESSSSBEEEEEEEECCSSCEEEECCCTTCCSCEEEEECSSSEEEEEEECC------CCEEEEEEE
T ss_pred             EEEEec-cceEEEcccCCCccceeeEEEeccCceeEEEEEcCcccceeeeeeccccccceEEEEECCCccccccEEEeCC
Confidence            556665 568999998653 23566777777776666655541                       12    45566654


Q ss_pred             C--------------------CCeEEEEEcCCCCceeEEEEecCCCCCeeEEEecC-CCCCcEEEEEecCCcEEEEEecC
Q 022111           77 Y--------------------DGQVIIWKEGNQNDWTQAHTFNDHKSSVNSIAWAP-HELGLSLACGSSDGNISVFTATA  135 (302)
Q Consensus        77 ~--------------------D~~i~iwd~~~~~~~~~~~~~~~h~~~i~~l~~~p-d~~~~~l~sg~~d~~v~~~~~~~  135 (302)
                      .                    |++|++|++....  ..+..+.+|...++.++|+| +..+.+|++|+.|++|+|||+.+
T Consensus       135 ~~~~v~~l~~g~lv~ss~~g~d~~V~~~~~s~dG--~~~~s~~~~~~~v~~l~fs~~~g~~~~LaSgS~D~TIkIWDl~T  212 (356)
T 2w18_A          135 NIKAVLGLTKRRLVSSSGTLSDQQVEVMTFAEDG--GGKENQFLMPPEETILTFAEVQGMQEALLGTTIMNNIVIWNLKT  212 (356)
T ss_dssp             EEEEEEEETTTEEEEEESSSTTCEEEEEEECTTS--CEEEEEEECCCSSCEEEEEEEETSTTEEEEEETTSEEEEEETTT
T ss_pred             CeEEEEecCCCcEEEecccCCCCcEEEEEECCCC--ceeeeeccCCCceeeEEeeccCCCCceEEEecCCCcEEEEECCC
Confidence            3                    8889999884432  24556667888899999988 33367999999999999999976


Q ss_pred             CCCeeeeeeccc--CCCCeEEEEeCCCCCCCceeecccCCCceeEEEeeCCCcEEEEEEecCccccccccc-cccCCCce
Q 022111          136 DGGWDTTRIDQA--HPVGVTSVSWAPAMAPGALVGLGLLDPVQKLASCGCDNTVKVWKMYNGIWKMDCFPA-LQMHSDWV  212 (302)
Q Consensus       136 ~~~~~~~~~~~~--h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~D~~v~iwd~~~~~~~~~~~~~-~~~h~~~v  212 (302)
                      +...  ..+...  +...+.+++|+|++.  .++..........++||+.|++|++||..++......... ..+|...+
T Consensus       213 Gk~l--~tL~g~~~~v~~v~~vafSpdG~--~lvs~s~~~~~w~laSGs~D~tIklWd~~tgk~l~v~~~~~p~Gh~~~~  288 (356)
T 2w18_A          213 GQLL--KKMHIDDSYQASVCHKAYSEMGL--LFIVLSHPCAKESESLRSPVFQLIVINPKTTLSVGVMLYCLPPGQAGRF  288 (356)
T ss_dssp             CCEE--EEEECCC---CCCEEEEEEETTE--EEEEEC------------CCEEEEEEETTTTEEEEEEEECCCTTCCCCE
T ss_pred             CcEE--EEEcCCCcceeeeEEEEECCCCC--EEEEeccCCCcceeeccCCCcEEEEEECCCCEEEEEEEeeccCCCccee
Confidence            5432  333212  234677888998641  1111000011224689999999999998876311000001 24676665


Q ss_pred             eEEEeeCCCCCCccEEEEEecCCeEEEEEeccCCcceeeeeeccCCCcEE-EEEEccCCCEEEEecCC-ceEEeee
Q 022111          213 RSVAWAPNLGLPKSTIASASQDGTVVIWTCAKEGEQWEGRVLKDFKTPVW-SVSWSLTGNLLAVADAN-NVTLWKE  286 (302)
Q Consensus       213 ~~v~~~p~~~~~~~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~~~~~v~-~~~~spdg~~la~~~~d-~i~~w~~  286 (302)
                      .+.+++      +..+|+++.|++|||||+.+...   ...+.+|...+. +++|||||++|++|+.| +|+||+.
T Consensus       289 lsg~~s------g~~lASgS~DgTIkIWDl~tGk~---l~tL~gH~~~vvs~vafSPDG~~LaSGS~D~TIklWd~  355 (356)
T 2w18_A          289 LEGDVK------DHCAAAILTSGTIAIWDLLLGQC---TALLPPVSDQHWSFVKWSGTDSHLLAGQKDGNIFVYHY  355 (356)
T ss_dssp             EEEEEE------TTEEEEEETTSCEEEEETTTCSE---EEEECCC--CCCCEEEECSSSSEEEEECTTSCEEEEEE
T ss_pred             EccccC------CCEEEEEcCCCcEEEEECCCCcE---EEEecCCCCCeEEEEEECCCCCEEEEEECCCcEEEecC
Confidence            555554      25799999999999999986431   233456666555 58999999999999999 7999985

>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}

Probab=99.96  E-value=6.7e-27  Score=204.46  Aligned_cols=224  Identities=17%  Similarity=0.258  Sum_probs=163.7

Q ss_pred             ceEEEEecCcccCeEEEEeeCCCC--CCEEEEEeCCCeEEEEEcCCCCceeEEEEecCCCCCeeEEEecCCCCCcEEEEE
Q 022111           45 SQHLATLKGHRGPVWQVAWAHPKF--GSILASCSYDGQVIIWKEGNQNDWTQAHTFNDHKSSVNSIAWAPHELGLSLACG  122 (302)
Q Consensus        45 ~~~~~~~~~h~~~v~~v~~~~~~~--~~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~h~~~i~~l~~~pd~~~~~l~sg  122 (302)
                      .+.+..+.+|.+.|++++|+++ .  |++|++|+.|+.|++||+.+... .....+.+|...|.+++|+|+  +.+|+++
T Consensus        29 ~~~~~~~~~h~~~v~~~~~~~~-~~~g~~l~~~~~dg~i~iw~~~~~~~-~~~~~~~~h~~~v~~~~~~~~--~~~l~s~  104 (368)
T 3mmy_A           29 MKDIEVTSSPDDSIGCLSFSPP-TLPGNFLIAGSWANDVRCWEVQDSGQ-TIPKAQQMHTGPVLDVCWSDD--GSKVFTA  104 (368)
T ss_dssp             TCCEECSSCCSSCEEEEEECCT-TSSSEEEEEEETTSEEEEEEECTTSC-EEEEEEEECSSCEEEEEECTT--SSEEEEE
T ss_pred             cceeEeccCCCCceEEEEEcCC-CCCceEEEEECCCCcEEEEEcCCCCc-eeEEEeccccCCEEEEEECcC--CCEEEEE
Confidence            3456678899999999999864 3  58999999999999999976322 233667789999999999997  6699999


Q ss_pred             ecCCcEEEEEecCCCCeeeeeecccCCCCeEEEEe--CCCCCCCceeecccCCCceeEEEeeCCCcEEEEEEecCccccc
Q 022111          123 SSDGNISVFTATADGGWDTTRIDQAHPVGVTSVSW--APAMAPGALVGLGLLDPVQKLASCGCDNTVKVWKMYNGIWKMD  200 (302)
Q Consensus       123 ~~d~~v~~~~~~~~~~~~~~~~~~~h~~~v~~~~~--~~~~~~~~~~~~~~~~~~~~l~s~~~D~~v~iwd~~~~~~~~~  200 (302)
                      +.|+.|++||+.....   ... ..|...|.++.|  +|+              +.+|++++.|+.|++||++++.....
T Consensus       105 ~~dg~v~iwd~~~~~~---~~~-~~~~~~v~~~~~~~~~~--------------~~~l~~~~~dg~i~vwd~~~~~~~~~  166 (368)
T 3mmy_A          105 SCDKTAKMWDLSSNQA---IQI-AQHDAPVKTIHWIKAPN--------------YSCVMTGSWDKTLKFWDTRSSNPMMV  166 (368)
T ss_dssp             ETTSEEEEEETTTTEE---EEE-EECSSCEEEEEEEECSS--------------CEEEEEEETTSEEEEECSSCSSCSEE
T ss_pred             cCCCcEEEEEcCCCCc---eee-ccccCceEEEEEEeCCC--------------CCEEEEccCCCcEEEEECCCCcEEEE
Confidence            9999999999875422   222 268899999999  554              47899999999999999876521100


Q ss_pred             c-------------------------------------ccccccCCCceeEEEeeCCCCCCccEEEEEecCCeEEEEEec
Q 022111          201 C-------------------------------------FPALQMHSDWVRSVAWAPNLGLPKSTIASASQDGTVVIWTCA  243 (302)
Q Consensus       201 ~-------------------------------------~~~~~~h~~~v~~v~~~p~~~~~~~~l~s~s~D~~i~iwd~~  243 (302)
                      .                                     ......+...+.++++.++....+..+++++.|+.|++||++
T Consensus       167 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~  246 (368)
T 3mmy_A          167 LQLPERCYCADVIYPMAVVATAERGLIVYQLENQPSEFRRIESPLKHQHRCVAIFKDKQNKPTGFALGSIEGRVAIHYIN  246 (368)
T ss_dssp             EECSSCEEEEEEETTEEEEEEGGGCEEEEECSSSCEEEEECCCSCSSCEEEEEEEECTTSCEEEEEEEETTSEEEEEESS
T ss_pred             EecCCCceEEEecCCeeEEEeCCCcEEEEEeccccchhhhccccccCCCceEEEcccCCCCCCeEEEecCCCcEEEEecC
Confidence            0                                     000011234456666666543334559999999999999997


Q ss_pred             cCCcceeeeeeccCCC------------cEEEEEEccCCCEEEEecCC-ceEEeeecCCc
Q 022111          244 KEGEQWEGRVLKDFKT------------PVWSVSWSLTGNLLAVADAN-NVTLWKEAVDG  290 (302)
Q Consensus       244 ~~~~~~~~~~~~~~~~------------~v~~~~~spdg~~la~~~~d-~i~~w~~~~~~  290 (302)
                      .............+..            +|.+++|+|+|++|++++.| .|++|+.....
T Consensus       247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~  306 (368)
T 3mmy_A          247 PPNPAKDNFTFKCHRSNGTNTSAPQDIYAVNGIAFHPVHGTLATVGSDGRFSFWDKDART  306 (368)
T ss_dssp             CSCHHHHSEEEECSEEC----CCCEEECCEEEEEECTTTCCEEEEETTSCEEEEETTTTE
T ss_pred             CCCccccceeeeeeecccccccccccccceEEEEEecCCCEEEEEccCCeEEEEECCCCc
Confidence            6432111112233332            69999999999999999988 69999986433

>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A

Probab=99.96  E-value=1.1e-27  Score=213.56  Aligned_cols=220  Identities=13%  Similarity=0.130  Sum_probs=150.2

Q ss_pred             cccccccceeEEEEcc--------CCCEEEEeeCCCcEEEEeecCCCceEEEEecCcccCeEEEEeeCCCCCCEEEEEeC
Q 022111            6 IETGHEDTVHDVAMDF--------YGKRLATASSDSSIKIIGLSNSASQHLATLKGHRGPVWQVAWAHPKFGSILASCSY   77 (302)
Q Consensus         6 ~~~~h~~~v~~~~~s~--------~~~~l~s~~~d~~v~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~s~   77 (302)
                      .+.||++.|++++|+|        |+++|||||.|++|+|||+...  .++..+.+|...|.+++|+|+ ++.+|++++.
T Consensus       131 ~~~gH~~~v~~v~~~p~~~~~~~~d~~~las~s~D~tv~~Wd~~~~--~~~~~~~~~~~~v~~v~~~p~-~~~~l~~~~~  207 (393)
T 4gq1_A          131 GKSGHHNFVNDIDIADVYSADNRLAEQVIASVGDDCTLIIWRLTDE--GPILAGYPLSSPGISVQFRPS-NPNQLIVGER  207 (393)
T ss_dssp             TTTSCSSCEEEEEEEEEECTTCSEEEEEEEEEETTSEEEEEEEETT--EEEEEEEECSSCEEEEEEETT-EEEEEEEEET
T ss_pred             ccCCCCCceEEEEEccccccccCCCCCEEEEEECCCeEEEEECCCC--ceeeeecCCCCCcEEEEECCC-CCceEEecCC
Confidence            4679999999999997        7899999999999999999653  345566788899999999864 3468999999


Q ss_pred             CCeEEEEEcCCCCcee----------------------EEEEecCCCCCeeEEEec-CCCCCcEEEEEecCCcEEEEEec
Q 022111           78 DGQVIIWKEGNQNDWT----------------------QAHTFNDHKSSVNSIAWA-PHELGLSLACGSSDGNISVFTAT  134 (302)
Q Consensus        78 D~~i~iwd~~~~~~~~----------------------~~~~~~~h~~~i~~l~~~-pd~~~~~l~sg~~d~~v~~~~~~  134 (302)
                      |++|++||++.+....                      ......+|...+.++.|+ ||  +..|++++.|+++++||+.
T Consensus       208 d~~v~~wd~~t~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~v~~v~~~~~d--g~~l~s~s~d~~i~vwd~~  285 (393)
T 4gq1_A          208 NGNIRIFDWTLNLSAEENSQTELVKNPWLLTLNTLPLVNTCHSSGIASSLANVRWIGSD--GSGILAMCKSGAWLRWNLF  285 (393)
T ss_dssp             TSEEEEEETTCCC----------CSCCCSEEEESGGGC------CCSSSCSEEEEETTT--TCEEEEECTTSEEEEEEC-
T ss_pred             CCEEEEEECCCCcccccccccCCcccceEEecccccceeeeecccccccceeeeeecCC--CCEEEEEeCCCCEEEEECc
Confidence            9999999987543210                      011234688899999997 55  6799999999999999986


Q ss_pred             CCCCeeeeeecccCCCCeEEEEeCCCCCCC----ceeeccc--CCCceeEEEeeCCCcEEEEEEecCccccccccccccC
Q 022111          135 ADGGWDTTRIDQAHPVGVTSVSWAPAMAPG----ALVGLGL--LDPVQKLASCGCDNTVKVWKMYNGIWKMDCFPALQMH  208 (302)
Q Consensus       135 ~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~----~~~~~~~--~~~~~~l~s~~~D~~v~iwd~~~~~~~~~~~~~~~~h  208 (302)
                      .....  ..+. .|...+..+.+.|+....    .......  ..++.++++|+.|++|+|||+.++.    +...+.+|
T Consensus       286 ~~~~~--~~l~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sgs~Dg~V~lwd~~~~~----~~~~~~~~  358 (393)
T 4gq1_A          286 ANNDY--NEIS-DSTMKLGPKNLLPNVQGISLFPSLLGACPHPRYMDYFATAHSQHGLIQLINTYEKD----SNSIPIQL  358 (393)
T ss_dssp             ---------------------CCSCSEEEECSSCCSSCCEECSSCTTEEEEEETTTTEEEEEETTCTT----CCEEEEEC
T ss_pred             cCCCC--ceEe-eecCccccEEEccccccccccCcceeEEEccCCCCEEEEEECCCCEEEEEECCCCc----EEEEecCC
Confidence            43211  1121 344444444444432100    0000001  1134577888999999999998763    34456778


Q ss_pred             CCceeEEEeeCCCCCCccEEEEEecCCeEEEEEe
Q 022111          209 SDWVRSVAWAPNLGLPKSTIASASQDGTVVIWTC  242 (302)
Q Consensus       209 ~~~v~~v~~~p~~~~~~~~l~s~s~D~~i~iwd~  242 (302)
                      ..+|++|+|+||+    ++||++++|| +.+|.+
T Consensus       359 ~~~V~svafspdG----~~LA~as~~G-v~lvrL  387 (393)
T 4gq1_A          359 GMPIVDFCWHQDG----SHLAIATEGS-VLLTRL  387 (393)
T ss_dssp             SSCEEEEEECTTS----SEEEEEESSE-EEEEEE
T ss_pred             CCcEEEEEEcCCC----CEEEEEeCCC-eEEEEE
Confidence            8999999999996    7899998776 556654

>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}

Probab=99.95  E-value=3.1e-25  Score=199.13  Aligned_cols=241  Identities=9%  Similarity=0.091  Sum_probs=181.9

Q ss_pred             ccccccceeEEEEccCCCEEEEeeCCCcEEEEeecCCCceEEEEecCcccCeEEEEeeCCCCCCEE-EEEeCCCeEEEEE
Q 022111            7 ETGHEDTVHDVAMDFYGKRLATASSDSSIKIIGLSNSASQHLATLKGHRGPVWQVAWAHPKFGSIL-ASCSYDGQVIIWK   85 (302)
Q Consensus         7 ~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l-~s~s~D~~i~iwd   85 (302)
                      +.+|...|.+++|+++++++++++.|+.|++||+...  +.+..+..|...+.+++|+++  ++++ ++++.|+.|++||
T Consensus       165 ~~~~~~~v~~~~~~~~~~~~~s~~~d~~v~~~d~~~~--~~~~~~~~~~~~~~~~~~~~~--~~~l~~~~~~~~~i~~~d  240 (433)
T 3bws_A          165 YKKKLGFVETISIPEHNELWVSQMQANAVHVFDLKTL--AYKATVDLTGKWSKILLYDPI--RDLVYCSNWISEDISVID  240 (433)
T ss_dssp             HHTTCCEEEEEEEGGGTEEEEEEGGGTEEEEEETTTC--CEEEEEECSSSSEEEEEEETT--TTEEEEEETTTTEEEEEE
T ss_pred             ccccCCceeEEEEcCCCEEEEEECCCCEEEEEECCCc--eEEEEEcCCCCCeeEEEEcCC--CCEEEEEecCCCcEEEEE
Confidence            3478889999999999999999999999999998653  455677789999999999874  5665 5666899999999


Q ss_pred             cCCCCceeEEEEecCCCCCeeEEEecCCCCCcEEEEEe--------cCCcEEEEEecCCCCeeeeeecccCCCCeEEEEe
Q 022111           86 EGNQNDWTQAHTFNDHKSSVNSIAWAPHELGLSLACGS--------SDGNISVFTATADGGWDTTRIDQAHPVGVTSVSW  157 (302)
Q Consensus        86 ~~~~~~~~~~~~~~~h~~~i~~l~~~pd~~~~~l~sg~--------~d~~v~~~~~~~~~~~~~~~~~~~h~~~v~~~~~  157 (302)
                      ++++   .....+.. ...+.+++|+|+  +..+++++        .|+.|++||+......  ...  .|...+.+++|
T Consensus       241 ~~~~---~~~~~~~~-~~~~~~~~~~~~--g~~l~~~~~~~~~~~~~dg~i~~~d~~~~~~~--~~~--~~~~~~~~~~~  310 (433)
T 3bws_A          241 RKTK---LEIRKTDK-IGLPRGLLLSKD--GKELYIAQFSASNQESGGGRLGIYSMDKEKLI--DTI--GPPGNKRHIVS  310 (433)
T ss_dssp             TTTT---EEEEECCC-CSEEEEEEECTT--SSEEEEEEEESCTTCSCCEEEEEEETTTTEEE--EEE--EEEECEEEEEE
T ss_pred             CCCC---cEEEEecC-CCCceEEEEcCC--CCEEEEEECCCCccccCCCeEEEEECCCCcEE--eec--cCCCCcceEEE
Confidence            9765   34555554 456899999998  55787777        4889999998744221  121  34456788999


Q ss_pred             CCCCCCCceeecccCCCceeEEEeeCCCcEEEEEEecCccccccccccccCCCceeEEEeeCCCCCCccEEEEEec----
Q 022111          158 APAMAPGALVGLGLLDPVQKLASCGCDNTVKVWKMYNGIWKMDCFPALQMHSDWVRSVAWAPNLGLPKSTIASASQ----  233 (302)
Q Consensus       158 ~~~~~~~~~~~~~~~~~~~~l~s~~~D~~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~l~s~s~----  233 (302)
                      +|++             ...+++++.|+.|++||+.++.    ....+ .+...+.+++|+|++    +.|++++.    
T Consensus       311 ~~~g-------------~~l~~~~~~~~~v~v~d~~~~~----~~~~~-~~~~~~~~~~~s~dg----~~l~~~~~~~~~  368 (433)
T 3bws_A          311 GNTE-------------NKIYVSDMCCSKIEVYDLKEKK----VQKSI-PVFDKPNTIALSPDG----KYLYVSCRGPNH  368 (433)
T ss_dssp             CSST-------------TEEEEEETTTTEEEEEETTTTE----EEEEE-ECSSSEEEEEECTTS----SEEEEEECCCCC
T ss_pred             CCCC-------------CEEEEEecCCCEEEEEECCCCc----EEEEe-cCCCCCCeEEEcCCC----CEEEEEecCCCc
Confidence            9864             2467888999999999998653    22223 366779999999995    66777665    


Q ss_pred             -----------CCeEEEEEeccCCcceeeeeeccCCCcEEEEEEccCCCEEEEecC-C-ceEEeeec
Q 022111          234 -----------DGTVVIWTCAKEGEQWEGRVLKDFKTPVWSVSWSLTGNLLAVADA-N-NVTLWKEA  287 (302)
Q Consensus       234 -----------D~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~la~~~~-d-~i~~w~~~  287 (302)
                                 ||.|++||+.....  . .... ....+.+++|+|+|++|++++. + .|++|+..
T Consensus       369 ~~~~~~~~g~~dg~v~~~d~~~~~~--~-~~~~-~~~~~~~~~~s~dg~~l~~~~~~d~~i~v~~~~  431 (433)
T 3bws_A          369 PTEGYLKKGLVLGKVYVIDTTTDTV--K-EFWE-AGNQPTGLDVSPDNRYLVISDFLDHQIRVYRRD  431 (433)
T ss_dssp             TTTCTTSCCSSCCEEEEEETTTTEE--E-EEEE-CSSSEEEEEECTTSCEEEEEETTTTEEEEEEET
T ss_pred             cccccccccccceEEEEEECCCCcE--E-EEec-CCCCCceEEEcCCCCEEEEEECCCCeEEEEEec
Confidence                       57999999875321  1 1122 2457899999999999988764 5 79999975

>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3

Probab=99.94  E-value=1e-23  Score=186.78  Aligned_cols=237  Identities=11%  Similarity=0.095  Sum_probs=171.4

Q ss_pred             cceeEEEEccCCCEE-EEeeCCCcEEEEeecCCCceEEEEecCcccCeEEEEeeCCCCCCEE-EEEeCCCeEEEEEcCCC
Q 022111           12 DTVHDVAMDFYGKRL-ATASSDSSIKIIGLSNSASQHLATLKGHRGPVWQVAWAHPKFGSIL-ASCSYDGQVIIWKEGNQ   89 (302)
Q Consensus        12 ~~v~~~~~s~~~~~l-~s~~~d~~v~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l-~s~s~D~~i~iwd~~~~   89 (302)
                      ..+.+++|+|++++| ++++.|++|++||+..  .+.+..+..|. .+.+++|+++  +++| ++++.|+.|++||+.++
T Consensus        32 ~~~~~~~~s~dg~~l~~~~~~d~~i~v~d~~~--~~~~~~~~~~~-~v~~~~~spd--g~~l~~~~~~~~~v~v~d~~~~  106 (391)
T 1l0q_A           32 SNPMGAVISPDGTKVYVANAHSNDVSIIDTAT--NNVIATVPAGS-SPQGVAVSPD--GKQVYVTNMASSTLSVIDTTSN  106 (391)
T ss_dssp             SSEEEEEECTTSSEEEEEEGGGTEEEEEETTT--TEEEEEEECSS-SEEEEEECTT--SSEEEEEETTTTEEEEEETTTT
T ss_pred             CCcceEEECCCCCEEEEECCCCCeEEEEECCC--CeEEEEEECCC-CccceEECCC--CCEEEEEECCCCEEEEEECCCC
Confidence            458999999999876 6777999999999865  34555665554 8999999864  6665 55567899999999765


Q ss_pred             CceeEEEEecCCCCCeeEEEecCCCCCcEE-EEEecCCcEEEEEecCCCCeeeeeecccCCCCeEEEEeCCCCCCCceee
Q 022111           90 NDWTQAHTFNDHKSSVNSIAWAPHELGLSL-ACGSSDGNISVFTATADGGWDTTRIDQAHPVGVTSVSWAPAMAPGALVG  168 (302)
Q Consensus        90 ~~~~~~~~~~~h~~~i~~l~~~pd~~~~~l-~sg~~d~~v~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~  168 (302)
                      .   ....+. +...+.+++|+|+  +..+ ++++.++.|++||+.....  ...+.  +...+.++.|+|++       
T Consensus       107 ~---~~~~~~-~~~~~~~~~~s~d--g~~l~~~~~~~~~v~~~d~~~~~~--~~~~~--~~~~~~~~~~~~dg-------  169 (391)
T 1l0q_A          107 T---VAGTVK-TGKSPLGLALSPD--GKKLYVTNNGDKTVSVINTVTKAV--INTVS--VGRSPKGIAVTPDG-------  169 (391)
T ss_dssp             E---EEEEEE-CSSSEEEEEECTT--SSEEEEEETTTTEEEEEETTTTEE--EEEEE--CCSSEEEEEECTTS-------
T ss_pred             e---EEEEEe-CCCCcceEEECCC--CCEEEEEeCCCCEEEEEECCCCcE--EEEEe--cCCCcceEEECCCC-------
Confidence            3   344454 3457899999998  5555 7888899999999865322  22222  23456889999864       


Q ss_pred             cccCCCceeEEEeeCCCcEEEEEEecCccccccccccccCCCceeEEEeeCCCCCCccEEEEEe---cCCeEEEEEeccC
Q 022111          169 LGLLDPVQKLASCGCDNTVKVWKMYNGIWKMDCFPALQMHSDWVRSVAWAPNLGLPKSTIASAS---QDGTVVIWTCAKE  245 (302)
Q Consensus       169 ~~~~~~~~~l~s~~~D~~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~l~s~s---~D~~i~iwd~~~~  245 (302)
                            ...+++++.|+.|++||+.++.    +...+ .+...+.+++|+|++    +.|++++   .++.|++||++..
T Consensus       170 ------~~l~~~~~~~~~v~~~d~~~~~----~~~~~-~~~~~~~~~~~~~~g----~~l~~~~~~~~~~~v~~~d~~~~  234 (391)
T 1l0q_A          170 ------TKVYVANFDSMSISVIDTVTNS----VIDTV-KVEAAPSGIAVNPEG----TKAYVTNVDKYFNTVSMIDTGTN  234 (391)
T ss_dssp             ------SEEEEEETTTTEEEEEETTTTE----EEEEE-ECSSEEEEEEECTTS----SEEEEEEECSSCCEEEEEETTTT
T ss_pred             ------CEEEEEeCCCCEEEEEECCCCe----EEEEE-ecCCCccceEECCCC----CEEEEEecCcCCCcEEEEECCCC
Confidence                  2344788889999999998753    22222 356679999999985    6677776   6899999998754


Q ss_pred             CcceeeeeeccCCCcEEEEEEccCCCEE-EEecCC-ceEEeeecCC
Q 022111          246 GEQWEGRVLKDFKTPVWSVSWSLTGNLL-AVADAN-NVTLWKEAVD  289 (302)
Q Consensus       246 ~~~~~~~~~~~~~~~v~~~~~spdg~~l-a~~~~d-~i~~w~~~~~  289 (302)
                      ..  . ..... ...+.+++|+|+|++| ++++.+ .|++|+....
T Consensus       235 ~~--~-~~~~~-~~~~~~~~~s~dg~~l~~s~~~d~~v~v~d~~~~  276 (391)
T 1l0q_A          235 KI--T-ARIPV-GPDPAGIAVTPDGKKVYVALSFXNTVSVIDTATN  276 (391)
T ss_dssp             EE--E-EEEEC-CSSEEEEEECTTSSEEEEEETTTTEEEEEETTTT
T ss_pred             eE--E-EEEec-CCCccEEEEccCCCEEEEEcCCCCEEEEEECCCC
Confidence            21  1 12222 3457899999999988 455556 7999998653

>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A

Probab=99.94  E-value=9.4e-25  Score=191.94  Aligned_cols=224  Identities=12%  Similarity=0.106  Sum_probs=149.1

Q ss_pred             eEEEEecCcccCeEEEEeeCCCCCCEEEEEeCCCeEEEEEcCCCCceeEEEEecCCCCCeeEEEecCCCCCcEEEEEecC
Q 022111           46 QHLATLKGHRGPVWQVAWAHPKFGSILASCSYDGQVIIWKEGNQNDWTQAHTFNDHKSSVNSIAWAPHELGLSLACGSSD  125 (302)
Q Consensus        46 ~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~h~~~i~~l~~~pd~~~~~l~sg~~d  125 (302)
                      +++..+.+|...|++++|+++  |++||+|+.|+ +++|+....   ......  +...+..+++.++. ...+++++.|
T Consensus        10 ~~~~~~~~h~~~V~~v~fs~d--g~~la~g~~~~-~~iw~~~~~---~~~~~~--~~~~~~~~~~~~~~-~~~~~~~~~d   80 (355)
T 3vu4_A           10 NPIVPENHVSNPVTDYEFNQD--QSCLILSTLKS-FEIYNVHPV---AHIMSQ--EMRHLSKVRMLHRT-NYVAFVTGVK   80 (355)
T ss_dssp             ---------CCCCCEEEECTT--SSEEEEECSSE-EEEEEETTE---EEEEEE--ECSCCCEEEECTTS-SEEEEECSST
T ss_pred             CCccccccCCCceEEEEECCC--CCEEEEEcCCE-EEEEecCCc---ceeeee--ecCCeEEEEEcCCC-CEEEEEECCc
Confidence            345566889999999999864  88999888765 789998653   222222  22347888888763 3344678888


Q ss_pred             CcEEEEEecCCCCeeeeeecccCCCCeEEEEeCCCCC----CCceeecccCCC-----------------ceeEEE--ee
Q 022111          126 GNISVFTATADGGWDTTRIDQAHPVGVTSVSWAPAMA----PGALVGLGLLDP-----------------VQKLAS--CG  182 (302)
Q Consensus       126 ~~v~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~----~~~~~~~~~~~~-----------------~~~l~s--~~  182 (302)
                      ++|++||..+...  ...+  .+...|.++.++++..    .+.+.-......                 ...++.  |+
T Consensus        81 ~~v~iWd~~~~~~--~~~~--~~~~~v~~v~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~s~~~la~~sg~  156 (355)
T 3vu4_A           81 EVVHIWDDVKKQD--VSRI--KVDAPVKDLFLSREFIVVSYGDVISVFKFGNPWKRITDDIRFGGVCEFSNGLLVYSNEF  156 (355)
T ss_dssp             TEEEEEETTTTEE--EEEE--ECSSCEEEEEECSSEEEEEETTEEEEEESSTTCCBSSCCEEEEEEEEEETTEEEEEESS
T ss_pred             cEEEEEECCCCcE--EEEE--ECCCceEEEEEcCCEEEEEEcCEEEEEECCCCceeeEEeccCCceEEEEccEEEEeCCC
Confidence            9999999875422  2233  3556788888877421    000000000000                 023444  68


Q ss_pred             CCCcEEEEEEecCcc-----------ccc-cccccccCCCceeEEEeeCCCCCCccEEEEEecCCe-EEEEEeccCCcce
Q 022111          183 CDNTVKVWKMYNGIW-----------KMD-CFPALQMHSDWVRSVAWAPNLGLPKSTIASASQDGT-VVIWTCAKEGEQW  249 (302)
Q Consensus       183 ~D~~v~iwd~~~~~~-----------~~~-~~~~~~~h~~~v~~v~~~p~~~~~~~~l~s~s~D~~-i~iwd~~~~~~~~  249 (302)
                      .|+.|++||+.++..           ... +...+.+|.+.|++++|+|++    .+|++|+.|++ |+|||++....  
T Consensus       157 ~~g~v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~~~h~~~v~~~~~s~~g----~~l~s~s~d~~~v~iwd~~~~~~--  230 (355)
T 3vu4_A          157 NLGQIHITKLQSSGSATTQDQGVQQKAILGKGVLIKAHTNPIKMVRLNRKS----DMVATCSQDGTIIRVFKTEDGVL--  230 (355)
T ss_dssp             CTTCEEEEECCC------------------CCEEECCCSSCEEEEEECTTS----SEEEEEETTCSEEEEEETTTCCE--
T ss_pred             cCcEEEEEECCCCCccccccccccccccCcccEEEEccCCceEEEEECCCC----CEEEEEeCCCCEEEEEECCCCcE--
Confidence            899999999986420           000 145678999999999999985    78999999998 99999986432  


Q ss_pred             eeeeecc-CCCcEEEEEEccCCCEEEEecCC-ceEEeeecC
Q 022111          250 EGRVLKD-FKTPVWSVSWSLTGNLLAVADAN-NVTLWKEAV  288 (302)
Q Consensus       250 ~~~~~~~-~~~~v~~~~~spdg~~la~~~~d-~i~~w~~~~  288 (302)
                      ...+..+ |..+|.+++|+|+|++|++++.| .|++|+...
T Consensus       231 ~~~~~~g~h~~~v~~~~~s~~~~~l~s~s~d~~v~iw~~~~  271 (355)
T 3vu4_A          231 VREFRRGLDRADVVDMKWSTDGSKLAVVSDKWTLHVFEIFN  271 (355)
T ss_dssp             EEEEECTTCCSCEEEEEECTTSCEEEEEETTCEEEEEESSC
T ss_pred             EEEEEcCCCCCcEEEEEECCCCCEEEEEECCCEEEEEEccC
Confidence            1223224 78899999999999999999998 799999854

>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}

Probab=99.94  E-value=1.3e-24  Score=195.13  Aligned_cols=238  Identities=9%  Similarity=0.014  Sum_probs=178.7

Q ss_pred             cceeEEEEccCCCEEEEeeCCCcEEEEeecCCCceEEE-----EecCcccCeEEEEeeCCCCCCEEEEEeCCCeEEEEEc
Q 022111           12 DTVHDVAMDFYGKRLATASSDSSIKIIGLSNSASQHLA-----TLKGHRGPVWQVAWAHPKFGSILASCSYDGQVIIWKE   86 (302)
Q Consensus        12 ~~v~~~~~s~~~~~l~s~~~d~~v~lw~~~~~~~~~~~-----~~~~h~~~v~~v~~~~~~~~~~l~s~s~D~~i~iwd~   86 (302)
                      ..+.+++|+|+++++++++.|++|++||+....  ...     .+.+|.+.|.+++|++  +++++++++.|+.|++||+
T Consensus       123 ~~~~~~~~s~~~~~~~~~~~~~~i~~~d~~~g~--~~~~~~~~~~~~~~~~v~~~~~~~--~~~~~~s~~~d~~v~~~d~  198 (433)
T 3bws_A          123 FQPKSVRFIDNTRLAIPLLEDEGMDVLDINSGQ--TVRLSPPEKYKKKLGFVETISIPE--HNELWVSQMQANAVHVFDL  198 (433)
T ss_dssp             SCBCCCEESSSSEEEEEBTTSSSEEEEETTTCC--EEEECCCHHHHTTCCEEEEEEEGG--GTEEEEEEGGGTEEEEEET
T ss_pred             CCceEEEEeCCCeEEEEeCCCCeEEEEECCCCe--EeeecCcccccccCCceeEEEEcC--CCEEEEEECCCCEEEEEEC
Confidence            345688999977888888899999999987543  233     3457888999999965  3789999999999999999


Q ss_pred             CCCCceeEEEEecCCCCCeeEEEecCCCCCcEE-EEEecCCcEEEEEecCCCCeeeeeecccCCCCeEEEEeCCCCCCCc
Q 022111           87 GNQNDWTQAHTFNDHKSSVNSIAWAPHELGLSL-ACGSSDGNISVFTATADGGWDTTRIDQAHPVGVTSVSWAPAMAPGA  165 (302)
Q Consensus        87 ~~~~~~~~~~~~~~h~~~i~~l~~~pd~~~~~l-~sg~~d~~v~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~  165 (302)
                      ++..   ....+..|...+.+++|+|+  +..+ ++++.|+.|++||+....  ....+  .+...+.+++|+|++    
T Consensus       199 ~~~~---~~~~~~~~~~~~~~~~~~~~--~~~l~~~~~~~~~i~~~d~~~~~--~~~~~--~~~~~~~~~~~~~~g----  265 (433)
T 3bws_A          199 KTLA---YKATVDLTGKWSKILLYDPI--RDLVYCSNWISEDISVIDRKTKL--EIRKT--DKIGLPRGLLLSKDG----  265 (433)
T ss_dssp             TTCC---EEEEEECSSSSEEEEEEETT--TTEEEEEETTTTEEEEEETTTTE--EEEEC--CCCSEEEEEEECTTS----
T ss_pred             CCce---EEEEEcCCCCCeeEEEEcCC--CCEEEEEecCCCcEEEEECCCCc--EEEEe--cCCCCceEEEEcCCC----
Confidence            7653   45666678899999999998  4455 566689999999986432  22222  223458899999864    


Q ss_pred             eeecccCCCceeEEEee--------CCCcEEEEEEecCccccccccccccCCCceeEEEeeCCCCCCccEEEEEecCCeE
Q 022111          166 LVGLGLLDPVQKLASCG--------CDNTVKVWKMYNGIWKMDCFPALQMHSDWVRSVAWAPNLGLPKSTIASASQDGTV  237 (302)
Q Consensus       166 ~~~~~~~~~~~~l~s~~--------~D~~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~l~s~s~D~~i  237 (302)
                                +.|++++        .|+.|++||+.++.    ... ...|...+.+++|+|++   ...+++++.|+.|
T Consensus       266 ----------~~l~~~~~~~~~~~~~dg~i~~~d~~~~~----~~~-~~~~~~~~~~~~~~~~g---~~l~~~~~~~~~v  327 (433)
T 3bws_A          266 ----------KELYIAQFSASNQESGGGRLGIYSMDKEK----LID-TIGPPGNKRHIVSGNTE---NKIYVSDMCCSKI  327 (433)
T ss_dssp             ----------SEEEEEEEESCTTCSCCEEEEEEETTTTE----EEE-EEEEEECEEEEEECSST---TEEEEEETTTTEE
T ss_pred             ----------CEEEEEECCCCccccCCCeEEEEECCCCc----EEe-eccCCCCcceEEECCCC---CEEEEEecCCCEE
Confidence                      5777776        58899999998653    111 23456678999999986   2466788999999


Q ss_pred             EEEEeccCCcceeeeeeccCCCcEEEEEEccCCCEEEEecCC----------------ceEEeeecC
Q 022111          238 VIWTCAKEGEQWEGRVLKDFKTPVWSVSWSLTGNLLAVADAN----------------NVTLWKEAV  288 (302)
Q Consensus       238 ~iwd~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~la~~~~d----------------~i~~w~~~~  288 (302)
                      ++||++....  . .. ..+...+.+++|+|+|++|++++.+                .|++|+...
T Consensus       328 ~v~d~~~~~~--~-~~-~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~g~~dg~v~~~d~~~  390 (433)
T 3bws_A          328 EVYDLKEKKV--Q-KS-IPVFDKPNTIALSPDGKYLYVSCRGPNHPTEGYLKKGLVLGKVYVIDTTT  390 (433)
T ss_dssp             EEEETTTTEE--E-EE-EECSSSEEEEEECTTSSEEEEEECCCCCTTTCTTSCCSSCCEEEEEETTT
T ss_pred             EEEECCCCcE--E-EE-ecCCCCCCeEEEcCCCCEEEEEecCCCccccccccccccceEEEEEECCC
Confidence            9999875321  1 11 2355679999999999988888653                699999754

>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3

Probab=99.93  E-value=3e-23  Score=183.74  Aligned_cols=226  Identities=12%  Similarity=0.123  Sum_probs=165.2

Q ss_pred             CEEEEeeCCCcEEEEeecCCCceEEEEecCcccCeEEEEeeCCCCCCEE-EEEeCCCeEEEEEcCCCCceeEEEEecCCC
Q 022111           24 KRLATASSDSSIKIIGLSNSASQHLATLKGHRGPVWQVAWAHPKFGSIL-ASCSYDGQVIIWKEGNQNDWTQAHTFNDHK  102 (302)
Q Consensus        24 ~~l~s~~~d~~v~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l-~s~s~D~~i~iwd~~~~~~~~~~~~~~~h~  102 (302)
                      ..+++++.|++|++||+..  .+.+..+..|. .+.+++|+++  +++| ++++.|++|++||+.++   .....+..+.
T Consensus         3 ~l~vs~~~d~~v~v~d~~~--~~~~~~~~~~~-~~~~~~~s~d--g~~l~~~~~~d~~i~v~d~~~~---~~~~~~~~~~   74 (391)
T 1l0q_A            3 FAYIANSESDNISVIDVTS--NKVTATIPVGS-NPMGAVISPD--GTKVYVANAHSNDVSIIDTATN---NVIATVPAGS   74 (391)
T ss_dssp             EEEEEETTTTEEEEEETTT--TEEEEEEECSS-SEEEEEECTT--SSEEEEEEGGGTEEEEEETTTT---EEEEEEECSS
T ss_pred             EEEEEcCCCCEEEEEECCC--CeEEEEeecCC-CcceEEECCC--CCEEEEECCCCCeEEEEECCCC---eEEEEEECCC
Confidence            4678889999999999865  45566677665 4899999864  6655 77889999999999765   3455555444


Q ss_pred             CCeeEEEecCCCCCcEE-EEEecCCcEEEEEecCCCCeeeeeecccCCCCeEEEEeCCCCCCCceeecccCCCceeEEEe
Q 022111          103 SSVNSIAWAPHELGLSL-ACGSSDGNISVFTATADGGWDTTRIDQAHPVGVTSVSWAPAMAPGALVGLGLLDPVQKLASC  181 (302)
Q Consensus       103 ~~i~~l~~~pd~~~~~l-~sg~~d~~v~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~s~  181 (302)
                       .+.+++|+|+  +.+| ++++.++.|++||+.....  ...+  .+...+.+++|+|++             ..+++++
T Consensus        75 -~v~~~~~spd--g~~l~~~~~~~~~v~v~d~~~~~~--~~~~--~~~~~~~~~~~s~dg-------------~~l~~~~  134 (391)
T 1l0q_A           75 -SPQGVAVSPD--GKQVYVTNMASSTLSVIDTTSNTV--AGTV--KTGKSPLGLALSPDG-------------KKLYVTN  134 (391)
T ss_dssp             -SEEEEEECTT--SSEEEEEETTTTEEEEEETTTTEE--EEEE--ECSSSEEEEEECTTS-------------SEEEEEE
T ss_pred             -CccceEECCC--CCEEEEEECCCCEEEEEECCCCeE--EEEE--eCCCCcceEEECCCC-------------CEEEEEe
Confidence             8999999998  4555 5666779999999875422  2222  234568899999864             1344788


Q ss_pred             eCCCcEEEEEEecCccccccccccccCCCceeEEEeeCCCCCCccEE-EEEecCCeEEEEEeccCCcceeeeeeccCCCc
Q 022111          182 GCDNTVKVWKMYNGIWKMDCFPALQMHSDWVRSVAWAPNLGLPKSTI-ASASQDGTVVIWTCAKEGEQWEGRVLKDFKTP  260 (302)
Q Consensus       182 ~~D~~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~l-~s~s~D~~i~iwd~~~~~~~~~~~~~~~~~~~  260 (302)
                      +.|+.|++||+.++.    ....+..| ..+.+++|+|++    +.| ++++.|+.|++||++....  . .. ..+...
T Consensus       135 ~~~~~v~~~d~~~~~----~~~~~~~~-~~~~~~~~~~dg----~~l~~~~~~~~~v~~~d~~~~~~--~-~~-~~~~~~  201 (391)
T 1l0q_A          135 NGDKTVSVINTVTKA----VINTVSVG-RSPKGIAVTPDG----TKVYVANFDSMSISVIDTVTNSV--I-DT-VKVEAA  201 (391)
T ss_dssp             TTTTEEEEEETTTTE----EEEEEECC-SSEEEEEECTTS----SEEEEEETTTTEEEEEETTTTEE--E-EE-EECSSE
T ss_pred             CCCCEEEEEECCCCc----EEEEEecC-CCcceEEECCCC----CEEEEEeCCCCEEEEEECCCCeE--E-EE-EecCCC
Confidence            889999999998763    23334444 457999999996    444 7888999999999975421  1 11 234567


Q ss_pred             EEEEEEccCCCEEEEec---CC-ceEEeeecCCc
Q 022111          261 VWSVSWSLTGNLLAVAD---AN-NVTLWKEAVDG  290 (302)
Q Consensus       261 v~~~~~spdg~~la~~~---~d-~i~~w~~~~~~  290 (302)
                      +.+++|+|+|++|++++   .+ .|++|+.....
T Consensus       202 ~~~~~~~~~g~~l~~~~~~~~~~~v~~~d~~~~~  235 (391)
T 1l0q_A          202 PSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTNK  235 (391)
T ss_dssp             EEEEEECTTSSEEEEEEECSSCCEEEEEETTTTE
T ss_pred             ccceEECCCCCEEEEEecCcCCCcEEEEECCCCe
Confidence            89999999999998886   45 79999986443

>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1

Probab=99.93  E-value=1.9e-22  Score=174.72  Aligned_cols=266  Identities=12%  Similarity=0.193  Sum_probs=174.4

Q ss_pred             ccccceeEEEEccCCCEEEEeeCC-CcEEEEeec--CCCceEEEEecCcccCeEEEEeeCCCCCCEEEEEe-CCCeEEEE
Q 022111            9 GHEDTVHDVAMDFYGKRLATASSD-SSIKIIGLS--NSASQHLATLKGHRGPVWQVAWAHPKFGSILASCS-YDGQVIIW   84 (302)
Q Consensus         9 ~h~~~v~~~~~s~~~~~l~s~~~d-~~v~lw~~~--~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~s-~D~~i~iw   84 (302)
                      .|...+..++|+|++++|++++.+ +.|++|++.  .+....+..+..+. .+..++|+++  +++|++++ .++.|.+|
T Consensus        35 ~~~~~~~~~~~spdg~~l~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~s~d--g~~l~~~~~~~~~i~~~  111 (343)
T 1ri6_A           35 DVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESALPG-SLTHISTDHQ--GQFVFVGSYNAGNVSVT  111 (343)
T ss_dssp             ECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEECSS-CCSEEEECTT--SSEEEEEETTTTEEEEE
T ss_pred             ecCCCCceEEECCCCCEEEEeecCCCeEEEEEecCCCCceeeccccccCC-CCcEEEEcCC--CCEEEEEecCCCeEEEE
Confidence            466678889999999999988887 999999997  33334455555444 7789999864  77665555 58999999


Q ss_pred             EcCCCCceeEEEEecCCCCCeeEEEecCCCCCcEEEEEe-cCCcEEEEEecCCCCeeee---eecccCCCCeEEEEeCCC
Q 022111           85 KEGNQNDWTQAHTFNDHKSSVNSIAWAPHELGLSLACGS-SDGNISVFTATADGGWDTT---RIDQAHPVGVTSVSWAPA  160 (302)
Q Consensus        85 d~~~~~~~~~~~~~~~h~~~i~~l~~~pd~~~~~l~sg~-~d~~v~~~~~~~~~~~~~~---~~~~~h~~~v~~~~~~~~  160 (302)
                      |+.++........+.. ...+.+++|+|+  +..+++++ .++.|.+|++...+.....   .........+..+.|+|+
T Consensus       112 d~~~~~~~~~~~~~~~-~~~~~~~~~s~d--g~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pd  188 (343)
T 1ri6_A          112 RLEDGLPVGVVDVVEG-LDGCHSANISPD--NRTLWVPALKQDRICLFTVSDDGHLVAQDPAEVTTVEGAGPRHMVFHPN  188 (343)
T ss_dssp             EEETTEEEEEEEEECC-CTTBCCCEECTT--SSEEEEEEGGGTEEEEEEECTTSCEEEEEEEEEECSTTCCEEEEEECTT
T ss_pred             ECCCCccccccccccC-CCCceEEEECCC--CCEEEEecCCCCEEEEEEecCCCceeeecccccccCCCCCcceEEECCC
Confidence            9853222234444443 346899999998  55666666 8999999999763433211   222123346778999886


Q ss_pred             CCCCceeecccCCCce-eEEEeeCCCcEEEEEEec--Cccc-cccccccc-c--CCCceeEEEeeCCCCCCccEEEEEec
Q 022111          161 MAPGALVGLGLLDPVQ-KLASCGCDNTVKVWKMYN--GIWK-MDCFPALQ-M--HSDWVRSVAWAPNLGLPKSTIASASQ  233 (302)
Q Consensus       161 ~~~~~~~~~~~~~~~~-~l~s~~~D~~v~iwd~~~--~~~~-~~~~~~~~-~--h~~~v~~v~~~p~~~~~~~~l~s~s~  233 (302)
                      +              + .++++..++.|++||+..  +... ......+. +  ....+.+++|+|++   ...++++..
T Consensus       189 g--------------~~l~~~~~~~~~i~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg---~~l~v~~~~  251 (343)
T 1ri6_A          189 E--------------QYAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHITPDG---RHLYACDRT  251 (343)
T ss_dssp             S--------------SEEEEEETTTTEEEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEEEEECTTS---SEEEEEETT
T ss_pred             C--------------CEEEEEeCCCCEEEEEEecCCCCcEEEEeeccccCccccccCCccceEECCCC---CEEEEEecC
Confidence            4              4 445566899999999853  2111 11111111 1  13467789999996   234446668


Q ss_pred             CCeEEEEEeccCCcceee-eeeccCCCcEEEEEEccCCCEEEEecC-C-ceEEeeec-CCceEEEeeec
Q 022111          234 DGTVVIWTCAKEGEQWEG-RVLKDFKTPVWSVSWSLTGNLLAVADA-N-NVTLWKEA-VDGEWQQVSVV  298 (302)
Q Consensus       234 D~~i~iwd~~~~~~~~~~-~~~~~~~~~v~~~~~spdg~~la~~~~-d-~i~~w~~~-~~~~~~~~~~~  298 (302)
                      |+.|++||+......... ..... ...+.+++|+|+|++|++++. + .+.+|+.. ..|.+++...+
T Consensus       252 ~~~i~v~d~~~~~~~~~~~~~~~~-~~~~~~~~~s~dg~~l~~~~~~~~~v~v~~~d~~~g~~~~~~~~  319 (343)
T 1ri6_A          252 ASLITVFSVSEDGSVLSKEGFQPT-ETQPRGFNVDHSGKYLIAAGQKSHHISVYEIVGEQGLLHEKGRY  319 (343)
T ss_dssp             TTEEEEEEECTTSCCEEEEEEEEC-SSSCCCEEECTTSSEEEEECTTTCEEEEEEEETTTTEEEEEEEE
T ss_pred             CCEEEEEEEcCCCCceEEeeeecC-CCccceEEECCCCCEEEEecCCCCeEEEEEEcCCCceeeEcccc
Confidence            999999999732211111 11122 233788999999998888874 4 79999764 34666665543

>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}

Probab=99.92  E-value=7.9e-22  Score=172.10  Aligned_cols=261  Identities=12%  Similarity=0.126  Sum_probs=172.7

Q ss_pred             cccceeEEEEccCCCEEEEeeC---CCcEEEEeecCCCceEEEEecCcccCeEEEEeeCCCCCCEEEEEe-CCCeEEEEE
Q 022111           10 HEDTVHDVAMDFYGKRLATASS---DSSIKIIGLSNSASQHLATLKGHRGPVWQVAWAHPKFGSILASCS-YDGQVIIWK   85 (302)
Q Consensus        10 h~~~v~~~~~s~~~~~l~s~~~---d~~v~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~s-~D~~i~iwd   85 (302)
                      +...+..++|+|||+ |++++.   ++.|++|++..+..+.+..+..|...+..++|+++  |++|++++ .++++.+|+
T Consensus        38 ~~~~p~~~a~spdg~-l~~~~~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~p~~~a~spd--g~~l~~~~~~~~~v~v~~  114 (347)
T 3hfq_A           38 ATQNPTYLALSAKDC-LYSVDKEDDEGGIAAWQIDGQTAHKLNTVVAPGTPPAYVAVDEA--RQLVYSANYHKGTAEVMK  114 (347)
T ss_dssp             ECSCCCCEEECTTCE-EEEEEEETTEEEEEEEEEETTEEEEEEEEEEESCCCSEEEEETT--TTEEEEEETTTTEEEEEE
T ss_pred             ccCCcceEEEccCCe-EEEEEecCCCceEEEEEecCCcEEEeeeeecCCCCCEEEEECCC--CCEEEEEeCCCCEEEEEE
Confidence            445567799999998 555554   68999999976554455555667778889999874  78777777 789999999


Q ss_pred             cCCCCceeEEEEecC---------CCCCeeEEEecCCCCCcEEEEEecCCcEEEEEecCCCCeee-eeecccCCCCeEEE
Q 022111           86 EGNQNDWTQAHTFND---------HKSSVNSIAWAPHELGLSLACGSSDGNISVFTATADGGWDT-TRIDQAHPVGVTSV  155 (302)
Q Consensus        86 ~~~~~~~~~~~~~~~---------h~~~i~~l~~~pd~~~~~l~sg~~d~~v~~~~~~~~~~~~~-~~~~~~h~~~v~~~  155 (302)
                      +........+..+..         +...+.+++|+|+  +.++++...++.|.+|++...+.... .............+
T Consensus       115 ~~~~g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~spd--g~l~v~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~p~~~  192 (347)
T 3hfq_A          115 IAADGALTLTDTVQHSGHGPRPEQDGSHIHYTDLTPD--NRLAVIDLGSDKVYVYNVSDAGQLSEQSVLTMEAGFGPRHL  192 (347)
T ss_dssp             ECTTSCEEEEEEEECCCCCSSTTCSSCCEEEEEECTT--SCEEEEETTTTEEEEEEECTTSCEEEEEEEECCTTCCEEEE
T ss_pred             eCCCCCeeecceeecCCCCCCccccCCCceEEEECCC--CcEEEEeCCCCEEEEEEECCCCcEEEeeeEEcCCCCCCceE
Confidence            864333333333321         1234789999998  55677777788999999974443322 11121223356788


Q ss_pred             EeCCCCCCCceeecccCCCce-eEEEeeCCCcEEEEEEecCccccccccccccC------CCceeEEEeeCCCCCCccEE
Q 022111          156 SWAPAMAPGALVGLGLLDPVQ-KLASCGCDNTVKVWKMYNGIWKMDCFPALQMH------SDWVRSVAWAPNLGLPKSTI  228 (302)
Q Consensus       156 ~~~~~~~~~~~~~~~~~~~~~-~l~s~~~D~~v~iwd~~~~~~~~~~~~~~~~h------~~~v~~v~~~p~~~~~~~~l  228 (302)
                      +|+|++              + .++++..++.|++|++......+.....+...      ...+..++|+||+    ++|
T Consensus       193 ~~spdg--------------~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~spdG----~~l  254 (347)
T 3hfq_A          193 VFSPDG--------------QYAFLAGELSSQIASLKYDTQTGAFTQLGIVKTIPADYTAHNGAAAIRLSHDG----HFL  254 (347)
T ss_dssp             EECTTS--------------SEEEEEETTTTEEEEEEEETTTTEEEEEEEEESSCTTCCSCCEEEEEEECTTS----CEE
T ss_pred             EECCCC--------------CEEEEEeCCCCEEEEEEecCCCCceEEeeeeeecCCCCCCCCcceeEEECCCC----CEE
Confidence            999864              4 45556778999999998521111111122111      2458899999996    545


Q ss_pred             -EEEecCCeEEEEEeccCCcceeeeeeccCCCcEEEEEEccCCCEEEEecCC--ceEEeeec-CCceEE
Q 022111          229 -ASASQDGTVVIWTCAKEGEQWEGRVLKDFKTPVWSVSWSLTGNLLAVADAN--NVTLWKEA-VDGEWQ  293 (302)
Q Consensus       229 -~s~s~D~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~la~~~~d--~i~~w~~~-~~~~~~  293 (302)
                       ++...++.|++|++...+..........+...+..++|+|||++|++++.+  .+.+|+.. ..|+..
T Consensus       255 ~v~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~d~~tg~l~  323 (347)
T 3hfq_A          255 YVSNRGYNTLAVFAVTADGHLTLIQQISTEGDFPRDFDLDPTEAFVVVVNQNTDNATLYARDLTSGKLS  323 (347)
T ss_dssp             EEEEETTTEEEEEEECGGGCEEEEEEEECSSSCCCEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEE
T ss_pred             EEEeCCCCEEEEEEECCCCcEEEeEEEecCCCCcCeEEECCCCCEEEEEEcCCCcEEEEEEeCCCCeEE
Confidence             677779999999987432111111222334457899999999998888654  69999764 345544

>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A

Probab=99.92  E-value=5.4e-23  Score=184.54  Aligned_cols=238  Identities=15%  Similarity=0.171  Sum_probs=170.2

Q ss_pred             ccccccceeEEEEcc--------------CCCEEEEeeCC------CcEEEEeecCCCceEEEEecCcccCeEEEEeeCC
Q 022111            7 ETGHEDTVHDVAMDF--------------YGKRLATASSD------SSIKIIGLSNSASQHLATLKGHRGPVWQVAWAHP   66 (302)
Q Consensus         7 ~~~h~~~v~~~~~s~--------------~~~~l~s~~~d------~~v~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~   66 (302)
                      +.+|...+..+++++              .+..++.++.+      ++|++||+...   ....+.+|...|.+++|+|+
T Consensus       113 ~~~~~~~~~~~~~~~~d~~~~~~~g~~~~~~~~l~~~s~~~~~~~~~~i~i~d~~g~---~~~~l~~~~~~v~~~~~Spd  189 (415)
T 2hqs_A          113 YKVNKQWLRYAGHTASDEVFEKLTGIKGAFRTRIAYVVQTNGGQFPYELRVSDYDGY---NQFVVHRSPQPLMSPAWSPD  189 (415)
T ss_dssp             EEECGGGHHHHHHHHHHHHHHHHHSSCCCTTCEEEEEEECSSSSCCEEEEEEETTSC---SCEEEEEESSCEEEEEECTT
T ss_pred             EEcChhHHHHHHHHHHHHHHHHHcCCCCcCCCEEEEEEecCCCCccceEEEEcCCCC---CCEEEeCCCCcceeeEEcCC
Confidence            445666666555553              25566666654      79999998643   34567789999999999874


Q ss_pred             CCCCEEEEEeCCC---eEEEEEcCCCCceeEEEEecCCCCCeeEEEecCCCCCcEEE-EEecCCc--EEEEEecCCCCee
Q 022111           67 KFGSILASCSYDG---QVIIWKEGNQNDWTQAHTFNDHKSSVNSIAWAPHELGLSLA-CGSSDGN--ISVFTATADGGWD  140 (302)
Q Consensus        67 ~~~~~l~s~s~D~---~i~iwd~~~~~~~~~~~~~~~h~~~i~~l~~~pd~~~~~l~-sg~~d~~--v~~~~~~~~~~~~  140 (302)
                        |++|++++.|+   .|++||+.++.    ...+..|...+.+++|+||  |..|+ +++.++.  |++||+.... . 
T Consensus       190 --g~~la~~s~~~~~~~i~~~d~~tg~----~~~l~~~~~~~~~~~~spd--g~~la~~~~~~g~~~i~~~d~~~~~-~-  259 (415)
T 2hqs_A          190 --GSKLAYVTFESGRSALVIQTLANGA----VRQVASFPRHNGAPAFSPD--GSKLAFALSKTGSLNLYVMDLASGQ-I-  259 (415)
T ss_dssp             --SSEEEEEECTTSSCEEEEEETTTCC----EEEEECCSSCEEEEEECTT--SSEEEEEECTTSSCEEEEEETTTCC-E-
T ss_pred             --CCEEEEEEecCCCcEEEEEECCCCc----EEEeecCCCcccCEEEcCC--CCEEEEEEecCCCceEEEEECCCCC-E-
Confidence              89999999885   99999997753    2345568889999999998  66666 6666655  8888876432 2 


Q ss_pred             eeeecccCCCCeEEEEeCCCCCCCceeecccCCCceeEEEeeC-CC--cEEEEEEecCccccccccccccCCCceeEEEe
Q 022111          141 TTRIDQAHPVGVTSVSWAPAMAPGALVGLGLLDPVQKLASCGC-DN--TVKVWKMYNGIWKMDCFPALQMHSDWVRSVAW  217 (302)
Q Consensus       141 ~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~-D~--~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~~  217 (302)
                       ..+. .|...+.++.|+|++              +.|+.++. ++  .|++||+.++.     ...+..|...+.+++|
T Consensus       260 -~~l~-~~~~~~~~~~~spdg--------------~~l~~~s~~~g~~~i~~~d~~~~~-----~~~l~~~~~~~~~~~~  318 (415)
T 2hqs_A          260 -RQVT-DGRSNNTEPTWFPDS--------------QNLAFTSDQAGRPQVYKVNINGGA-----PQRITWEGSQNQDADV  318 (415)
T ss_dssp             -EECC-CCSSCEEEEEECTTS--------------SEEEEEECTTSSCEEEEEETTSSC-----CEECCCSSSEEEEEEE
T ss_pred             -EeCc-CCCCcccceEECCCC--------------CEEEEEECCCCCcEEEEEECCCCC-----EEEEecCCCcccCeEE
Confidence             2332 567789999999974              66776665 55  56666776542     2234557778999999


Q ss_pred             eCCCCCCccEEEEEecC---CeEEEEEeccCCcceeeeeeccCCCcEEEEEEccCCCEEEEecCC----ceEEeeec
Q 022111          218 APNLGLPKSTIASASQD---GTVVIWTCAKEGEQWEGRVLKDFKTPVWSVSWSLTGNLLAVADAN----NVTLWKEA  287 (302)
Q Consensus       218 ~p~~~~~~~~l~s~s~D---~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~la~~~~d----~i~~w~~~  287 (302)
                      +|++    ++|++++.+   ..|++||+.....    ..+..+. .+.+++|+|||++|++++.+    .|.+|+..
T Consensus       319 spdG----~~l~~~~~~~g~~~i~~~d~~~~~~----~~l~~~~-~~~~~~~spdg~~l~~~s~~~~~~~l~~~d~~  386 (415)
T 2hqs_A          319 SSDG----KFMVMVSSNGGQQHIAKQDLATGGV----QVLSSTF-LDETPSLAPNGTMVIYSSSQGMGSVLNLVSTD  386 (415)
T ss_dssp             CTTS----SEEEEEEECSSCEEEEEEETTTCCE----EECCCSS-SCEEEEECTTSSEEEEEEEETTEEEEEEEETT
T ss_pred             CCCC----CEEEEEECcCCceEEEEEECCCCCE----EEecCCC-CcCCeEEcCCCCEEEEEEcCCCccEEEEEECC
Confidence            9996    678877764   5899999875421    2233333 78999999999999888654    37888864

>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A

Probab=99.91  E-value=8.6e-22  Score=176.70  Aligned_cols=222  Identities=17%  Similarity=0.141  Sum_probs=164.5

Q ss_pred             cccccccceeEEEEccCCCEEEEeeCCC---cEEEEeecCCCceEEEEecCcccCeEEEEeeCCCCCCEEE-EEeCCCe-
Q 022111            6 IETGHEDTVHDVAMDFYGKRLATASSDS---SIKIIGLSNSASQHLATLKGHRGPVWQVAWAHPKFGSILA-SCSYDGQ-   80 (302)
Q Consensus         6 ~~~~h~~~v~~~~~s~~~~~l~s~~~d~---~v~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~-s~s~D~~-   80 (302)
                      .+.+|...|.+++|+|||++||+++.|+   +|++||+..+.  . ..+..|...+.+++|+|+  |++|+ +++.|+. 
T Consensus       173 ~l~~~~~~v~~~~~Spdg~~la~~s~~~~~~~i~~~d~~tg~--~-~~l~~~~~~~~~~~~spd--g~~la~~~~~~g~~  247 (415)
T 2hqs_A          173 VVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGA--V-RQVASFPRHNGAPAFSPD--GSKLAFALSKTGSL  247 (415)
T ss_dssp             EEEEESSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCC--E-EEEECCSSCEEEEEECTT--SSEEEEEECTTSSC
T ss_pred             EEeCCCCcceeeEEcCCCCEEEEEEecCCCcEEEEEECCCCc--E-EEeecCCCcccCEEEcCC--CCEEEEEEecCCCc
Confidence            4557888999999999999999999885   99999997543  2 346678889999999874  78766 7766655 


Q ss_pred             -EEEEEcCCCCceeEEEEecCCCCCeeEEEecCCCCCcEEEEEec-CC--cEEEEEecCCCCeeeeeecccCCCCeEEEE
Q 022111           81 -VIIWKEGNQNDWTQAHTFNDHKSSVNSIAWAPHELGLSLACGSS-DG--NISVFTATADGGWDTTRIDQAHPVGVTSVS  156 (302)
Q Consensus        81 -i~iwd~~~~~~~~~~~~~~~h~~~i~~l~~~pd~~~~~l~sg~~-d~--~v~~~~~~~~~~~~~~~~~~~h~~~v~~~~  156 (302)
                       |.+||++++.    ...+..|...+.+++|+||  |..|++++. ++  .|.+||+.....   ..+. .+...+.+++
T Consensus       248 ~i~~~d~~~~~----~~~l~~~~~~~~~~~~spd--g~~l~~~s~~~g~~~i~~~d~~~~~~---~~l~-~~~~~~~~~~  317 (415)
T 2hqs_A          248 NLYVMDLASGQ----IRQVTDGRSNNTEPTWFPD--SQNLAFTSDQAGRPQVYKVNINGGAP---QRIT-WEGSQNQDAD  317 (415)
T ss_dssp             EEEEEETTTCC----EEECCCCSSCEEEEEECTT--SSEEEEEECTTSSCEEEEEETTSSCC---EECC-CSSSEEEEEE
T ss_pred             eEEEEECCCCC----EEeCcCCCCcccceEECCC--CCEEEEEECCCCCcEEEEEECCCCCE---EEEe-cCCCcccCeE
Confidence             8889987652    3567778889999999998  667777775 45  555566653321   2222 3556688899


Q ss_pred             eCCCCCCCceeecccCCCceeEEEeeCC---CcEEEEEEecCccccccccccccCCCceeEEEeeCCCCCCccEEEEEec
Q 022111          157 WAPAMAPGALVGLGLLDPVQKLASCGCD---NTVKVWKMYNGIWKMDCFPALQMHSDWVRSVAWAPNLGLPKSTIASASQ  233 (302)
Q Consensus       157 ~~~~~~~~~~~~~~~~~~~~~l~s~~~D---~~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~l~s~s~  233 (302)
                      |+|++              ++|++++.+   ..|++||+.++..     ..+..|. .+.+++|+|++    +.|++++.
T Consensus       318 ~spdG--------------~~l~~~~~~~g~~~i~~~d~~~~~~-----~~l~~~~-~~~~~~~spdg----~~l~~~s~  373 (415)
T 2hqs_A          318 VSSDG--------------KFMVMVSSNGGQQHIAKQDLATGGV-----QVLSSTF-LDETPSLAPNG----TMVIYSSS  373 (415)
T ss_dssp             ECTTS--------------SEEEEEEECSSCEEEEEEETTTCCE-----EECCCSS-SCEEEEECTTS----SEEEEEEE
T ss_pred             ECCCC--------------CEEEEEECcCCceEEEEEECCCCCE-----EEecCCC-CcCCeEEcCCC----CEEEEEEc
Confidence            99974              677777654   5799999987632     2344454 79999999996    77888887


Q ss_pred             CC---eEEEEEeccCCcceeeeeeccCCCcEEEEEEccCC
Q 022111          234 DG---TVVIWTCAKEGEQWEGRVLKDFKTPVWSVSWSLTG  270 (302)
Q Consensus       234 D~---~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~spdg  270 (302)
                      |+   .|++||+....    ...+..+.+.|.+++|+|.-
T Consensus       374 ~~~~~~l~~~d~~g~~----~~~l~~~~~~v~~~~~~~~~  409 (415)
T 2hqs_A          374 QGMGSVLNLVSTDGRF----KARLPATDGQVKFPAWSPYL  409 (415)
T ss_dssp             ETTEEEEEEEETTSCC----EEECCCSSSEEEEEEECCCC
T ss_pred             CCCccEEEEEECCCCc----EEEeeCCCCCCcCCcccccc
Confidence            77   79999986431    23456777889999999954

>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}

Probab=99.90  E-value=4.6e-22  Score=168.21  Aligned_cols=239  Identities=14%  Similarity=0.101  Sum_probs=167.6

Q ss_pred             ccccccceeEEEEccCCCEEEEeeCCCcEEEEeecC-CCceEEEEecCc-ccCeEEEEeeCCCCCCEEEEEe--CCCeEE
Q 022111            7 ETGHEDTVHDVAMDFYGKRLATASSDSSIKIIGLSN-SASQHLATLKGH-RGPVWQVAWAHPKFGSILASCS--YDGQVI   82 (302)
Q Consensus         7 ~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~lw~~~~-~~~~~~~~~~~h-~~~v~~v~~~~~~~~~~l~s~s--~D~~i~   82 (302)
                      ...|...|.+++|+|++++|++++ ++.|++|++.. ...  .....+| ...+.+++|+++  +++|++++  .++..+
T Consensus        37 ~~~~~~~v~~~~~spdg~~l~~~~-~~~i~~~d~~~~~~~--~~~~~~~~~~~~~~~~~spd--g~~l~~~~~~~~~~~~  111 (297)
T 2ojh_A           37 VWQTPELFEAPNWSPDGKYLLLNS-EGLLYRLSLAGDPSP--EKVDTGFATICNNDHGISPD--GALYAISDKVEFGKSA  111 (297)
T ss_dssp             EEEESSCCEEEEECTTSSEEEEEE-TTEEEEEESSSCCSC--EECCCTTCCCBCSCCEECTT--SSEEEEEECTTTSSCE
T ss_pred             eccCCcceEeeEECCCCCEEEEEc-CCeEEEEeCCCCCCc--eEeccccccccccceEECCC--CCEEEEEEeCCCCcce
Confidence            446888999999999999999876 88999999876 432  2333444 467889999864  88999988  445677


Q ss_pred             EEEcCCCCceeEEEEecCCCCCeeEEEecCCCCCcEEE-EEecCCcEEEEEecCCCCeeeeeecccCCCCeEEEEeCCCC
Q 022111           83 IWKEGNQNDWTQAHTFNDHKSSVNSIAWAPHELGLSLA-CGSSDGNISVFTATADGGWDTTRIDQAHPVGVTSVSWAPAM  161 (302)
Q Consensus        83 iwd~~~~~~~~~~~~~~~h~~~i~~l~~~pd~~~~~l~-sg~~d~~v~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~  161 (302)
                      ||.+.....  ....+..+ ..+..++|+|+  +..|+ +++.++.+++|++...+.. ...+ ..+...+.++.|+|++
T Consensus       112 l~~~~~~~~--~~~~~~~~-~~~~~~~~spd--g~~l~~~~~~~~~~~l~~~~~~~~~-~~~~-~~~~~~~~~~~~s~dg  184 (297)
T 2ojh_A          112 IYLLPSTGG--TPRLMTKN-LPSYWHGWSPD--GKSFTYCGIRDQVFDIYSMDIDSGV-ETRL-THGEGRNDGPDYSPDG  184 (297)
T ss_dssp             EEEEETTCC--CCEECCSS-SSEEEEEECTT--SSEEEEEEEETTEEEEEEEETTTCC-EEEC-CCSSSCEEEEEECTTS
T ss_pred             EEEEECCCC--ceEEeecC-CCccceEECCC--CCEEEEEECCCCceEEEEEECCCCc-ceEc-ccCCCccccceECCCC
Confidence            776532211  23344433 35899999998  55555 7888999999997643221 1222 2566778999999864


Q ss_pred             CCCceeecccCCCceeEEEe-eCCCcEEEEEEecCccccccccccccCCCceeEEEeeCCCCCCccEEEEEecC------
Q 022111          162 APGALVGLGLLDPVQKLASC-GCDNTVKVWKMYNGIWKMDCFPALQMHSDWVRSVAWAPNLGLPKSTIASASQD------  234 (302)
Q Consensus       162 ~~~~~~~~~~~~~~~~l~s~-~~D~~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~l~s~s~D------  234 (302)
                                    +.|+.+ ..++.++||++....   .....+..|...+.+++|+|++    ++|+.++.+      
T Consensus       185 --------------~~l~~~~~~~~~~~i~~~~~~~---~~~~~~~~~~~~~~~~~~s~dg----~~l~~~~~~~~~~~~  243 (297)
T 2ojh_A          185 --------------RWIYFNSSRTGQMQIWRVRVDG---SSVERITDSAYGDWFPHPSPSG----DKVVFVSYDADVFDH  243 (297)
T ss_dssp             --------------SEEEEEECTTSSCEEEEEETTS---SCEEECCCCSEEEEEEEECTTS----SEEEEEEEETTCCSC
T ss_pred             --------------CEEEEEecCCCCccEEEECCCC---CCcEEEecCCcccCCeEECCCC----CEEEEEEcCCCCCcc
Confidence                          555554 469999999987321   2234556678889999999995    678777765      


Q ss_pred             -----CeEEEEEeccCCcceeeeeeccCCCcEEEEEEccCCCEEEEecCC
Q 022111          235 -----GTVVIWTCAKEGEQWEGRVLKDFKTPVWSVSWSLTGNLLAVADAN  279 (302)
Q Consensus       235 -----~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~la~~~~d  279 (302)
                           +.|.+||+....... .....++...+..++|+|||++|++++.+
T Consensus       244 ~~~~~~~l~~~d~~~~~~~~-~~~~~~~~~~~~~~~~spdg~~l~~~~~~  292 (297)
T 2ojh_A          244 PRDLDVRVQLMDMDGGNVET-LFDLFGGQGTMNSPNWSPDGDEFAYVRYF  292 (297)
T ss_dssp             CSSEEEEEEEEETTSCSCEE-EEEEEESTTTSCSCCBCTTSSEEEEEEEC
T ss_pred             cccCceEEEEEecCCCCcee-eeccCCCCcccccceECCCCCEEEEEEec
Confidence                 569999987543211 11123556678899999999999888654

>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A

Probab=99.90  E-value=1.2e-21  Score=176.63  Aligned_cols=260  Identities=19%  Similarity=0.225  Sum_probs=172.6

Q ss_pred             cccceeEEEEccCCCEEEEeeCCCcEEEEeecCC---------CceE-----EEEecCcccCeEEEEeeCCCCCCEEE--
Q 022111           10 HEDTVHDVAMDFYGKRLATASSDSSIKIIGLSNS---------ASQH-----LATLKGHRGPVWQVAWAHPKFGSILA--   73 (302)
Q Consensus        10 h~~~v~~~~~s~~~~~l~s~~~d~~v~lw~~~~~---------~~~~-----~~~~~~h~~~v~~v~~~~~~~~~~l~--   73 (302)
                      +...++.+++++++.++++++.|+ +++|+....         ....     ...+ .|...|.+++|+++  +++|+  
T Consensus        35 ~~~~~n~lavs~~~~~l~~~~~dg-v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~l~~spd--g~~lav~  110 (434)
T 2oit_A           35 PKERSSLLAVSNKYGLVFAGGASG-LQIFPTKNLLIQNKPGDDPNKIVDKVQGLLV-PMKFPIHHLALSCD--NLTLSAC  110 (434)
T ss_dssp             CCSCCBCEEEETTTTEEEEEETTE-EEEEEHHHHCCCCCTTCCTTCEEECCCCEEE-CCSSCEEEEEECTT--SCEEEEE
T ss_pred             CCCCccEEEEecCCCEEEEECCCE-EEEEEchHhhhhcccccCcccccccCccccc-cCCCcccEEEEcCC--CCEEEEE
Confidence            344578899999999999999888 899875310         0000     1112 35678999999864  78888  


Q ss_pred             --EEeCCCeEEEEEcCCC--------CceeEEEEecCCCCCeeEEEecCCCCCcEEEEEecCCcEEEEEecCCCCeeeee
Q 022111           74 --SCSYDGQVIIWKEGNQ--------NDWTQAHTFNDHKSSVNSIAWAPHELGLSLACGSSDGNISVFTATADGGWDTTR  143 (302)
Q Consensus        74 --s~s~D~~i~iwd~~~~--------~~~~~~~~~~~h~~~i~~l~~~pd~~~~~l~sg~~d~~v~~~~~~~~~~~~~~~  143 (302)
                        +++.|++|+|||+++.        ........+.+|...|.+++|+|+. +.+|++++.|++|++||++...  ....
T Consensus       111 ~~sgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~-~~~las~s~Dg~v~iwD~~~~~--~~~~  187 (434)
T 2oit_A          111 MMSSEYGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPTV-PSMVAVCLADGSIAVLQVTETV--KVCA  187 (434)
T ss_dssp             EEETTTEEEEEEEEHHHHHCTTCSSCCCSEEEECCCSGGGSEEEEEECSSC-TTEEEEEETTSCEEEEEESSSE--EEEE
T ss_pred             EeccCCCceEEEEEccccccCCcCCcceeeeeeccCCCCCceEEEEECCCC-CCEEEEEECCCeEEEEEcCCCc--ceee
Confidence              8899999999998543        1122345677899999999999973 4689999999999999997542  2222


Q ss_pred             ecccCCCCeEEEEeCCCCCCCceeecccCCCceeEEEeeCCCcEEEEEEecCcc-cccccccc-ccCCCceeEEEeeCCC
Q 022111          144 IDQAHPVGVTSVSWAPAMAPGALVGLGLLDPVQKLASCGCDNTVKVWKMYNGIW-KMDCFPAL-QMHSDWVRSVAWAPNL  221 (302)
Q Consensus       144 ~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~D~~v~iwd~~~~~~-~~~~~~~~-~~h~~~v~~v~~~p~~  221 (302)
                      . ..|...+.+++|+|++              ++|++|+.|++|++||++.... .+.....+ ..|...|.+++|+|+.
T Consensus       188 ~-~~~~~~v~~v~wspdg--------------~~lasgs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~w~~~~  252 (434)
T 2oit_A          188 T-LPSTVAVTSVCWSPKG--------------KQLAVGKQNGTVVQYLPTLQEKKVIPCPPFYESDHPVRVLDVLWIGTY  252 (434)
T ss_dssp             E-ECGGGCEEEEEECTTS--------------SCEEEEETTSCEEEECTTCCEEEEECCCTTCCTTSCEEEEEEEEEETT
T ss_pred             c-cCCCCceeEEEEcCCC--------------CEEEEEcCCCcEEEEccCCcccccccCCcccCCCCceeEEEEEEecCc
Confidence            2 2577889999999964              7899999999999999872111 11111111 1344589999999974


Q ss_pred             CCCccEEEE-EecCC------eEEEEEeccCCcc----eeeeeec-----cCCCcEEEEEEccCCCEEEEecCC--ceEE
Q 022111          222 GLPKSTIAS-ASQDG------TVVIWTCAKEGEQ----WEGRVLK-----DFKTPVWSVSWSLTGNLLAVADAN--NVTL  283 (302)
Q Consensus       222 ~~~~~~l~s-~s~D~------~i~iwd~~~~~~~----~~~~~~~-----~~~~~v~~~~~spdg~~la~~~~d--~i~~  283 (302)
                          .++++ .+.||      .+++|+++..+..    +....-.     ....+-..+.+-++.+++++++..  .|.+
T Consensus       253 ----~~l~~~~~~dg~~~~~~~v~i~~l~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~l~dw~l~~v~s~~s~dv~v  328 (434)
T 2oit_A          253 ----VFAIVYAAADGTLETSPDVVMALLPKKEEKHPEIFVNFMEPCYGSCTERQHHYYLSYIEEWDLVLAASAASTEVSI  328 (434)
T ss_dssp             ----EEEEEEEETTCCSSSCCEEEEEECCCTTTCCCCEEEECCCSSCCCCSSSCCCEEEEEEGGGTEEEEEETTCSBCEE
T ss_pred             ----eEEEEEccCCCccCCCCceEEEEeccCCCCCCcceEecccCCCCCCCCcCcceeeehhccCCEEEEecCCCCceeE
Confidence                44433 33443      3899999764321    1110000     112233334444888888888775  4777


Q ss_pred             eeecCCc-eEEEe
Q 022111          284 WKEAVDG-EWQQV  295 (302)
Q Consensus       284 w~~~~~~-~~~~~  295 (302)
                      .....++ .|+..
T Consensus       329 l~~~~~~~~~~~~  341 (434)
T 2oit_A          329 LARQSDQINWESW  341 (434)
T ss_dssp             EEECTTSSCEEEE
T ss_pred             EEecCCCCccEEE
Confidence            7764443 36543

>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*

Probab=99.89  E-value=1e-20  Score=175.25  Aligned_cols=245  Identities=13%  Similarity=0.125  Sum_probs=173.9

Q ss_pred             eeEEEEccCCCEEEEeeCCCcEEEEeecCCCceEEEEecCcccCeEEEEeeC----CCCCCEEEEEe-CCCeEEEEEcCC
Q 022111           14 VHDVAMDFYGKRLATASSDSSIKIIGLSNSASQHLATLKGHRGPVWQVAWAH----PKFGSILASCS-YDGQVIIWKEGN   88 (302)
Q Consensus        14 v~~~~~s~~~~~l~s~~~d~~v~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~----~~~~~~l~s~s-~D~~i~iwd~~~   88 (302)
                      +..++|+|||++|++++.|++|++||+...+.+.+.++.. ...+..++|++    +  |++|++++ .+++|.+||..+
T Consensus       181 ~~~v~~spdg~~l~v~~~d~~V~v~D~~~~t~~~~~~i~~-g~~p~~va~sp~~~~d--g~~l~v~~~~~~~v~v~D~~t  257 (543)
T 1nir_A          181 VHISRMSASGRYLLVIGRDARIDMIDLWAKEPTKVAEIKI-GIEARSVESSKFKGYE--DRYTIAGAYWPPQFAIMDGET  257 (543)
T ss_dssp             EEEEEECTTSCEEEEEETTSEEEEEETTSSSCEEEEEEEC-CSEEEEEEECCSTTCT--TTEEEEEEEESSEEEEEETTT
T ss_pred             cceEEECCCCCEEEEECCCCeEEEEECcCCCCcEEEEEec-CCCcceEEeCCCcCCC--CCEEEEEEccCCeEEEEeccc
Confidence            7889999999999999999999999993223556667764 44578999986    4  78888887 489999999876


Q ss_pred             CCceeEEEEecC----------C-CCCeeEEEecCCCCCcEEEEEecCCcEEEEEecCCCCeeeeeecccCCCCeEEEEe
Q 022111           89 QNDWTQAHTFND----------H-KSSVNSIAWAPHELGLSLACGSSDGNISVFTATADGGWDTTRIDQAHPVGVTSVSW  157 (302)
Q Consensus        89 ~~~~~~~~~~~~----------h-~~~i~~l~~~pd~~~~~l~sg~~d~~v~~~~~~~~~~~~~~~~~~~h~~~v~~~~~  157 (302)
                      ..   +++++..          | ...+..+.++|+. ...+++...++.|.+||...........+  .+...+..+.|
T Consensus       258 ~~---~~~~i~~~g~~~~~~~~~~~~~v~~i~~s~~~-~~~~vs~~~~g~i~vvd~~~~~~l~~~~i--~~~~~~~~~~~  331 (543)
T 1nir_A          258 LE---PKQIVSTRGMTVDTQTYHPEPRVAAIIASHEH-PEFIVNVKETGKVLLVNYKDIDNLTVTSI--GAAPFLHDGGW  331 (543)
T ss_dssp             CC---EEEEEECCEECSSSCCEESCCCEEEEEECSSS-SEEEEEETTTTEEEEEECTTSSSCEEEEE--ECCSSCCCEEE
T ss_pred             cc---cceeecccCcccCccccccCCceEEEEECCCC-CEEEEEECCCCeEEEEEecCCCcceeEEe--ccCcCccCceE
Confidence            53   3444432          2 2378899999974 45788888999999999875433322232  23445667888


Q ss_pred             CCCCCCCceeecccCCCcee-EEEeeCCCcEEEEEEecCccccccccccc----cCCCceeEEEeeCCCCCCccEEEEEe
Q 022111          158 APAMAPGALVGLGLLDPVQK-LASCGCDNTVKVWKMYNGIWKMDCFPALQ----MHSDWVRSVAWAPNLGLPKSTIASAS  232 (302)
Q Consensus       158 ~~~~~~~~~~~~~~~~~~~~-l~s~~~D~~v~iwd~~~~~~~~~~~~~~~----~h~~~v~~v~~~p~~~~~~~~l~s~s  232 (302)
                      +|++              ++ ++++..+++|.+||+.++.    +...+.    .|.+....+ ++|++   +..+++++
T Consensus       332 spdg--------------~~l~va~~~~~~v~v~D~~tg~----l~~~i~~g~~ph~g~g~~~-~~p~~---g~~~~s~~  389 (543)
T 1nir_A          332 DSSH--------------RYFMTAANNSNKVAVIDSKDRR----LSALVDVGKTPHPGRGANF-VHPKY---GPVWSTSH  389 (543)
T ss_dssp             CTTS--------------CEEEEEEGGGTEEEEEETTTTE----EEEEEECSSSBCCTTCEEE-EETTT---EEEEEEEB
T ss_pred             CCCC--------------CEEEEEecCCCeEEEEECCCCe----EEEeeccCCCCCCCCCccc-CCCCC---ccEEEecc
Confidence            8864              54 4556678999999998763    222222    365544443 47874   46677876


Q ss_pred             -cCCeEEEEEeccCCc---cee-eeeeccCCCcEEEEEEccCCCEEEEec--------CCceEEeeecCC
Q 022111          233 -QDGTVVIWTCAKEGE---QWE-GRVLKDFKTPVWSVSWSLTGNLLAVAD--------ANNVTLWKEAVD  289 (302)
Q Consensus       233 -~D~~i~iwd~~~~~~---~~~-~~~~~~~~~~v~~~~~spdg~~la~~~--------~d~i~~w~~~~~  289 (302)
                       .|++|++||....+.   .|. ...+..+...++.++|+|||++|.++.        +++|.+||....
T Consensus       390 ~~d~~V~v~d~~~~~~~~~~~~~v~~l~~~g~~~~~v~~~pdg~~l~v~~~~~~~~~~~~~v~v~d~~~~  459 (543)
T 1nir_A          390 LGDGSISLIGTDPKNHPQYAWKKVAELQGQGGGSLFIKTHPKSSHLYVDTTFNPDARISQSVAVFDLKNL  459 (543)
T ss_dssp             SSSSEEEEEECCTTTCTTTBTSEEEEEECSCSCCCCEECCTTCCEEEECCTTCSSHHHHTCEEEEETTCT
T ss_pred             CCCceEEEEEeCCCCCchhcCeEEEEEEcCCCCceEEEcCCCCCcEEEecCCCCCcccCceEEEEECCCC
Confidence             689999999976321   021 233455666788899999999999986        348999998643

>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A

Probab=99.88  E-value=7.6e-19  Score=154.05  Aligned_cols=261  Identities=12%  Similarity=0.137  Sum_probs=165.4

Q ss_pred             cccceeEEEEccCCCEEEEeeCC----CcEEEEeecCCC--ceEEEEecCcccCeEEEEeeCCCCCCEEEEEe-CCCeEE
Q 022111           10 HEDTVHDVAMDFYGKRLATASSD----SSIKIIGLSNSA--SQHLATLKGHRGPVWQVAWAHPKFGSILASCS-YDGQVI   82 (302)
Q Consensus        10 h~~~v~~~~~s~~~~~l~s~~~d----~~v~lw~~~~~~--~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~s-~D~~i~   82 (302)
                      +...+..++|+||+++|++++.+    +.|++|++....  .+.+.....+......+++  +  +++|++++ .++++.
T Consensus        48 ~~~~p~~l~~spdg~~l~~~~~~~~~~~~v~~~~~~~~~g~~~~~~~~~~~~~~p~~~~~--d--g~~l~~~~~~~~~v~  123 (361)
T 3scy_A           48 EVANPSYLIPSADGKFVYSVNEFSKDQAAVSAFAFDKEKGTLHLLNTQKTMGADPCYLTT--N--GKNIVTANYSGGSIT  123 (361)
T ss_dssp             ECSCCCSEEECTTSSEEEEEECCSSTTCEEEEEEEETTTTEEEEEEEEECSSSCEEEEEE--C--SSEEEEEETTTTEEE
T ss_pred             cCCCCceEEECCCCCEEEEEEccCCCCCcEEEEEEeCCCCcEEEeeEeccCCCCcEEEEE--C--CCEEEEEECCCCEEE
Confidence            44566778999999999999886    799999987532  2344444445556677777  2  66666655 688999


Q ss_pred             EEEcCCCCceeEE---EEecC--------CCCCeeEEEecCCCCCcEE-EEEecCCcEEEEEecCCCC------eee---
Q 022111           83 IWKEGNQNDWTQA---HTFND--------HKSSVNSIAWAPHELGLSL-ACGSSDGNISVFTATADGG------WDT---  141 (302)
Q Consensus        83 iwd~~~~~~~~~~---~~~~~--------h~~~i~~l~~~pd~~~~~l-~sg~~d~~v~~~~~~~~~~------~~~---  141 (302)
                      +|++.........   ....+        +...+.+++|+||  +.++ +++..++.|.+|++.....      +..   
T Consensus       124 ~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~spd--g~~l~~~~~~~~~v~v~~~~~~~~~~~~~~l~~~~~  201 (361)
T 3scy_A          124 VFPIGQDGALLPASDVIEFKGSGPDKERQTMPHLHCVRITPD--GKYLLADDLGTDQIHKFNINPNANADNKEKFLTKGT  201 (361)
T ss_dssp             EEEBCTTSCBCSCSEEEECCCCCSCTTTCSSCCEEEEEECTT--SSEEEEEETTTTEEEEEEECTTCCTTTCCCCEEEEE
T ss_pred             EEEeCCCCcCcccceeEEccCCCCCccccCCCcceEEEECCC--CCEEEEEeCCCCEEEEEEEcCCCCcccccceeeccc
Confidence            9998643321111   11111        1234578999998  5545 4444588999999875432      211   


Q ss_pred             -eeecccCCCCeEEEEeCCCCCCCceeecccCCCceeEEEee-CCCcEEEEEEecCccc-cccccccccCCCceeEEEee
Q 022111          142 -TRIDQAHPVGVTSVSWAPAMAPGALVGLGLLDPVQKLASCG-CDNTVKVWKMYNGIWK-MDCFPALQMHSDWVRSVAWA  218 (302)
Q Consensus       142 -~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~-~D~~v~iwd~~~~~~~-~~~~~~~~~h~~~v~~v~~~  218 (302)
                       ......+......++|+|++              ++++.++ .++.|.+||+.++... ...+.....+.....+++|+
T Consensus       202 ~~~~~~~~~~~~~~~~~spdg--------------~~l~v~~~~~~~v~v~~~~~g~~~~~~~~~~~~~~~~~~~~i~~s  267 (361)
T 3scy_A          202 PEAFKVAPGSGPRHLIFNSDG--------------KFAYLINEIGGTVIAFRYADGMLDEIQTVAADTVNAQGSGDIHLS  267 (361)
T ss_dssp             EEEEECCTTCCEEEEEECTTS--------------SEEEEEETTTCEEEEEEEETTEEEEEEEEESCSSCCCCEEEEEEC
T ss_pred             ccceecCCCCCCeEEEEcCCC--------------CEEEEEcCCCCeEEEEEecCCceEEeEEEecCCCCCCCcccEEEC
Confidence             11222334557889999864              5555554 6899999999865321 11122233444567899999


Q ss_pred             CCCCCCccEEEEEe-c-CCeEEEEEeccCCccee-eeeeccCCCcEEEEEEccCCCEEEEecCC--ceEEeeec-CCceE
Q 022111          219 PNLGLPKSTIASAS-Q-DGTVVIWTCAKEGEQWE-GRVLKDFKTPVWSVSWSLTGNLLAVADAN--NVTLWKEA-VDGEW  292 (302)
Q Consensus       219 p~~~~~~~~l~s~s-~-D~~i~iwd~~~~~~~~~-~~~~~~~~~~v~~~~~spdg~~la~~~~d--~i~~w~~~-~~~~~  292 (302)
                      ||+    ++|+++. . ++.|++|+++....... ...... ...+..++|+|||++|++++.+  .|.+|+.. ..|+.
T Consensus       268 pdg----~~l~v~~~~~~~~i~v~~~~~~~g~~~~~~~~~~-g~~~~~~~~spdg~~l~~~~~~~~~v~v~~~d~~~g~~  342 (361)
T 3scy_A          268 PDG----KYLYASNRLKADGVAIFKVDETNGTLTKVGYQLT-GIHPRNFIITPNGKYLLVACRDTNVIQIFERDQATGLL  342 (361)
T ss_dssp             TTS----SEEEEEECSSSCEEEEEEECTTTCCEEEEEEEEC-SSCCCEEEECTTSCEEEEEETTTTEEEEEEECTTTCCE
T ss_pred             CCC----CEEEEECCCCCCEEEEEEEcCCCCcEEEeeEecC-CCCCceEEECCCCCEEEEEECCCCCEEEEEEECCCCcE
Confidence            996    5565544 4 58999999963221111 111122 4467899999999999888743  69998764 34555


Q ss_pred             EEe
Q 022111          293 QQV  295 (302)
Q Consensus       293 ~~~  295 (302)
                      ...
T Consensus       343 ~~~  345 (361)
T 3scy_A          343 TDI  345 (361)
T ss_dssp             EEC
T ss_pred             eec
Confidence            443

>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}

Probab=99.87  E-value=8.8e-20  Score=154.10  Aligned_cols=224  Identities=16%  Similarity=0.176  Sum_probs=158.0

Q ss_pred             EeeCCCcEEEEeecCCCceEEEEecCcccCeEEEEeeCCCCCCEEEEEeCCCeEEEEEcCC-CCceeEEEEecCC-CCCe
Q 022111           28 TASSDSSIKIIGLSNSASQHLATLKGHRGPVWQVAWAHPKFGSILASCSYDGQVIIWKEGN-QNDWTQAHTFNDH-KSSV  105 (302)
Q Consensus        28 s~~~d~~v~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~s~D~~i~iwd~~~-~~~~~~~~~~~~h-~~~i  105 (302)
                      +++.|++|++||+...  + ...+..|...|.+++|+++  +++|++++ ++.|.+||+.+ ..   ....+..+ ...+
T Consensus        17 ~~~~~~~i~~~d~~~~--~-~~~~~~~~~~v~~~~~spd--g~~l~~~~-~~~i~~~d~~~~~~---~~~~~~~~~~~~~   87 (297)
T 2ojh_A           17 GGSMRSSIEIFNIRTR--K-MRVVWQTPELFEAPNWSPD--GKYLLLNS-EGLLYRLSLAGDPS---PEKVDTGFATICN   87 (297)
T ss_dssp             -CCCCEEEEEEETTTT--E-EEEEEEESSCCEEEEECTT--SSEEEEEE-TTEEEEEESSSCCS---CEECCCTTCCCBC
T ss_pred             CCCcceeEEEEeCCCC--c-eeeeccCCcceEeeEECCC--CCEEEEEc-CCeEEEEeCCCCCC---ceEeccccccccc
Confidence            4578999999998653  2 2345568889999999874  88888876 78999999977 53   22333344 4788


Q ss_pred             eEEEecCCCCCcEEEEEe--cCCcEEEEEecCCCCeeeeeecccCCCCeEEEEeCCCCCCCceeecccCCCceeEE-Eee
Q 022111          106 NSIAWAPHELGLSLACGS--SDGNISVFTATADGGWDTTRIDQAHPVGVTSVSWAPAMAPGALVGLGLLDPVQKLA-SCG  182 (302)
Q Consensus       106 ~~l~~~pd~~~~~l~sg~--~d~~v~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~-s~~  182 (302)
                      .+++|+|+  +..|++++  .++...||.+...+.. ...+  .+...+..+.|+|++              +.|+ +++
T Consensus        88 ~~~~~spd--g~~l~~~~~~~~~~~~l~~~~~~~~~-~~~~--~~~~~~~~~~~spdg--------------~~l~~~~~  148 (297)
T 2ojh_A           88 NDHGISPD--GALYAISDKVEFGKSAIYLLPSTGGT-PRLM--TKNLPSYWHGWSPDG--------------KSFTYCGI  148 (297)
T ss_dssp             SCCEECTT--SSEEEEEECTTTSSCEEEEEETTCCC-CEEC--CSSSSEEEEEECTTS--------------SEEEEEEE
T ss_pred             cceEECCC--CCEEEEEEeCCCCcceEEEEECCCCc-eEEe--ecCCCccceEECCCC--------------CEEEEEEC
Confidence            99999998  66888888  4466777766532221 1222  223347888999874              4454 788


Q ss_pred             CCCcEEEEEEecCccccccccccccCCCceeEEEeeCCCCCCccEEEEEe-cCCeEEEEEeccCCcceeeeeeccCCCcE
Q 022111          183 CDNTVKVWKMYNGIWKMDCFPALQMHSDWVRSVAWAPNLGLPKSTIASAS-QDGTVVIWTCAKEGEQWEGRVLKDFKTPV  261 (302)
Q Consensus       183 ~D~~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~l~s~s-~D~~i~iwd~~~~~~~~~~~~~~~~~~~v  261 (302)
                      .|+.++||++.....   ....+..|...+.+++|+|++    +.|+.++ .|+.++||+++.....  ...+..+...+
T Consensus       149 ~~~~~~l~~~~~~~~---~~~~~~~~~~~~~~~~~s~dg----~~l~~~~~~~~~~~i~~~~~~~~~--~~~~~~~~~~~  219 (297)
T 2ojh_A          149 RDQVFDIYSMDIDSG---VETRLTHGEGRNDGPDYSPDG----RWIYFNSSRTGQMQIWRVRVDGSS--VERITDSAYGD  219 (297)
T ss_dssp             ETTEEEEEEEETTTC---CEEECCCSSSCEEEEEECTTS----SEEEEEECTTSSCEEEEEETTSSC--EEECCCCSEEE
T ss_pred             CCCceEEEEEECCCC---cceEcccCCCccccceECCCC----CEEEEEecCCCCccEEEECCCCCC--cEEEecCCccc
Confidence            899999999864321   123455678889999999996    5566555 6999999998743222  12334555678


Q ss_pred             EEEEEccCCCEEEEecCC------------ceEEeeecC
Q 022111          262 WSVSWSLTGNLLAVADAN------------NVTLWKEAV  288 (302)
Q Consensus       262 ~~~~~spdg~~la~~~~d------------~i~~w~~~~  288 (302)
                      ..++|+|+|++|++++.+            .|.+|+...
T Consensus       220 ~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~l~~~d~~~  258 (297)
T 2ojh_A          220 WFPHPSPSGDKVVFVSYDADVFDHPRDLDVRVQLMDMDG  258 (297)
T ss_dssp             EEEEECTTSSEEEEEEEETTCCSCCSSEEEEEEEEETTS
T ss_pred             CCeEECCCCCEEEEEEcCCCCCcccccCceEEEEEecCC
Confidence            999999999999888653            489999754

>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}

Probab=99.87  E-value=7.9e-21  Score=181.96  Aligned_cols=245  Identities=13%  Similarity=0.138  Sum_probs=168.0

Q ss_pred             ccceeEEEEccCCCEEEEeeC-CC-----cEEEEeecCCCceEEEEecCcc------------------------cCeEE
Q 022111           11 EDTVHDVAMDFYGKRLATASS-DS-----SIKIIGLSNSASQHLATLKGHR------------------------GPVWQ   60 (302)
Q Consensus        11 ~~~v~~~~~s~~~~~l~s~~~-d~-----~v~lw~~~~~~~~~~~~~~~h~------------------------~~v~~   60 (302)
                      ...+.+++|+|||++|++++. |+     +|++||+..+...  ..+..|.                        ..|.+
T Consensus        36 ~~~~~~~~~SpdG~~la~~~~~d~~~~~~~i~~~d~~~g~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~  113 (741)
T 2ecf_A           36 GPTLMKPKVAPDGSRVTFLRGKDSDRNQLDLWSYDIGSGQTR--LLVDSKVVLPGTETLSDEEKARRERQRIAAMTGIVD  113 (741)
T ss_dssp             CCCCEEEEECTTSSEEEEEECCSSCTTEEEEEEEETTTCCEE--EEECGGGTC--------------------CCEESCC
T ss_pred             CCCCCCceEecCCCEEEEEeccCCCCcccEEEEEECCCCcee--EccchhhcccccccccchhhhhhhhhhhccccCcce
Confidence            346889999999999999998 88     8999998764332  3333332                        23788


Q ss_pred             EEeeCCCCCCEEEEEeCCCeEEEEEcCCCCceeEEEEecCCCCCeeEEEecCCCCCcEEEEEecCCcEEEEEecCCCCee
Q 022111           61 VAWAHPKFGSILASCSYDGQVIIWKEGNQNDWTQAHTFNDHKSSVNSIAWAPHELGLSLACGSSDGNISVFTATADGGWD  140 (302)
Q Consensus        61 v~~~~~~~~~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~h~~~i~~l~~~pd~~~~~l~sg~~d~~v~~~~~~~~~~~~  140 (302)
                      ++|+|+  |++|++++. +.|.+||+.++.. .....+..|...+..++|+||  |.+|++++ ++.|++|++.....  
T Consensus       114 ~~~SpD--g~~l~~~~~-~~i~~~d~~~~~~-~~~~~l~~~~~~~~~~~~SPD--G~~la~~~-~~~i~~~d~~~g~~--  184 (741)
T 2ecf_A          114 YQWSPD--AQRLLFPLG-GELYLYDLKQEGK-AAVRQLTHGEGFATDAKLSPK--GGFVSFIR-GRNLWVIDLASGRQ--  184 (741)
T ss_dssp             CEECTT--SSEEEEEET-TEEEEEESSSCST-TSCCBCCCSSSCEEEEEECTT--SSEEEEEE-TTEEEEEETTTTEE--
T ss_pred             eEECCC--CCEEEEEeC-CcEEEEECCCCCc-ceEEEcccCCcccccccCCCC--CCEEEEEe-CCcEEEEecCCCCE--
Confidence            999874  899998886 9999999976510 012345667888999999998  77888887 46899999864321  


Q ss_pred             eeeecccCCC----------------CeEEEEeCCCCCCCceeecccCCCceeEEEeeCCC-------------------
Q 022111          141 TTRIDQAHPV----------------GVTSVSWAPAMAPGALVGLGLLDPVQKLASCGCDN-------------------  185 (302)
Q Consensus       141 ~~~~~~~h~~----------------~v~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~D~-------------------  185 (302)
                       ..+...+..                .+.++.|+|++              +.|++++.|+                   
T Consensus       185 -~~~~~~~~~~~~~g~~~~v~~~~~~~~~~~~~SpDg--------------~~l~~~~~d~~~~~~~~~~~~~p~~~~~~  249 (741)
T 2ecf_A          185 -MQLTADGSTTIGNGIAEFVADEEMDRHTGYWWAPDD--------------SAIAYARIDESPVPVQKRYEVYADRTDVI  249 (741)
T ss_dssp             -EECCCCCCSSEEESCCCHHHHHHSCCCCSEEECTTS--------------SCEEEEEEECTTSCEEEEEEECSSCEEEE
T ss_pred             -EEeccCCccceeccccceeeeeccccccceEECCCC--------------CEEEEEEEcCCCCceEecCCCCCCcccce
Confidence             112112222                14678899874              6777776655                   


Q ss_pred             --------------cEEEEEEec-CccccccccccccCCCceeEEEeeCCCCCCccEEEEEec-----CCeEEEEEeccC
Q 022111          186 --------------TVKVWKMYN-GIWKMDCFPALQMHSDWVRSVAWAPNLGLPKSTIASASQ-----DGTVVIWTCAKE  245 (302)
Q Consensus       186 --------------~v~iwd~~~-~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~l~s~s~-----D~~i~iwd~~~~  245 (302)
                                    .|++||+.+ +...  .+.....|...+.+++| ||+    +.|+.++.     +..|++||+.+.
T Consensus       250 ~~~~~~~g~~~~~~~l~~~d~~~~~~~~--~~~~~~~~~~~~~~~~~-pDg----~~l~~~~~~~~~~~~~i~~~d~~~g  322 (741)
T 2ecf_A          250 EQRYPAAGDANVQVKLGVISPAEQAQTQ--WIDLGKEQDIYLARVNW-RDP----QHLSFQRQSRDQKKLDLVEVTLASN  322 (741)
T ss_dssp             EEECCBTTSCCCEEEEEEECSSTTCCCE--EECCCSCSSEEEEEEEE-EET----TEEEEEEEETTSSEEEEEEEETTTC
T ss_pred             EeecCCCCCCCCeeEEEEEECCCCCceE--EecCCCCcceEEEEEEe-CCC----CEEEEEEecccCCeEEEEEEECCCC
Confidence                          788888876 5311  11111257888999999 996    66776654     567999998754


Q ss_pred             CcceeeeeeccCC-C---cEEEEEEccCCCEEEEecCC-ceEEeeecCCce
Q 022111          246 GEQWEGRVLKDFK-T---PVWSVSWSLTGNLLAVADAN-NVTLWKEAVDGE  291 (302)
Q Consensus       246 ~~~~~~~~~~~~~-~---~v~~~~~spdg~~la~~~~d-~i~~w~~~~~~~  291 (302)
                      ..   ..+...+. .   .+.+++|+|||+++++++.+ .++||....++.
T Consensus       323 ~~---~~~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~g~~~l~~~~~~~~  370 (741)
T 2ecf_A          323 QQ---RVLAHETSPTWVPLHNSLRFLDDGSILWSSERTGFQHLYRIDSKGK  370 (741)
T ss_dssp             CE---EEEEEEECSSCCCCCSCCEECTTSCEEEEECTTSSCEEEEECSSSC
T ss_pred             ce---EEEEEcCCCCcCCcCCceEECCCCeEEEEecCCCccEEEEEcCCCC
Confidence            31   12222222 1   34688999999988888777 588887754443

>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A

Probab=99.87  E-value=5e-21  Score=172.65  Aligned_cols=205  Identities=20%  Similarity=0.199  Sum_probs=143.3

Q ss_pred             cCeEEEEeeCCCCCCEEEEEeCCCeEEEEEcCCC----------Cce---eEEEEecCCCCCeeEEEecCCCCCcEEE--
Q 022111           56 GPVWQVAWAHPKFGSILASCSYDGQVIIWKEGNQ----------NDW---TQAHTFNDHKSSVNSIAWAPHELGLSLA--  120 (302)
Q Consensus        56 ~~v~~v~~~~~~~~~~l~s~s~D~~i~iwd~~~~----------~~~---~~~~~~~~h~~~i~~l~~~pd~~~~~l~--  120 (302)
                      ..+..+++++.  +.+|++++.|+ +++|+....          ...   .....+ .+...|.+++|+|+  +.+|+  
T Consensus        37 ~~~n~lavs~~--~~~l~~~~~dg-v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~l~~spd--g~~lav~  110 (434)
T 2oit_A           37 ERSSLLAVSNK--YGLVFAGGASG-LQIFPTKNLLIQNKPGDDPNKIVDKVQGLLV-PMKFPIHHLALSCD--NLTLSAC  110 (434)
T ss_dssp             SCCBCEEEETT--TTEEEEEETTE-EEEEEHHHHCCCCCTTCCTTCEEECCCCEEE-CCSSCEEEEEECTT--SCEEEEE
T ss_pred             CCccEEEEecC--CCEEEEECCCE-EEEEEchHhhhhcccccCcccccccCccccc-cCCCcccEEEEcCC--CCEEEEE
Confidence            34677888764  57888888887 888875211          000   001112 25678999999998  66888  


Q ss_pred             --EEecCCcEEEEEecCC--------CCeeeeeecccCCCCeEEEEeCCCCCCCceeecccCCCceeEEEeeCCCcEEEE
Q 022111          121 --CGSSDGNISVFTATAD--------GGWDTTRIDQAHPVGVTSVSWAPAMAPGALVGLGLLDPVQKLASCGCDNTVKVW  190 (302)
Q Consensus       121 --sg~~d~~v~~~~~~~~--------~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~D~~v~iw  190 (302)
                        +|+.|+.|++||+...        ..+.......+|...|.+++|+|..             +.+|++++.|++|++|
T Consensus       111 ~~sgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~-------------~~~las~s~Dg~v~iw  177 (434)
T 2oit_A          111 MMSSEYGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPTV-------------PSMVAVCLADGSIAVL  177 (434)
T ss_dssp             EEETTTEEEEEEEEHHHHHCTTCSSCCCSEEEECCCSGGGSEEEEEECSSC-------------TTEEEEEETTSCEEEE
T ss_pred             EeccCCCceEEEEEccccccCCcCCcceeeeeeccCCCCCceEEEEECCCC-------------CCEEEEEECCCeEEEE
Confidence              8899999999998642        1111122233688899999999963             3689999999999999


Q ss_pred             EEecCccccccccccccCCCceeEEEeeCCCCCCccEEEEEecCCeEEEEEeccCCcceeeeeec----cCCCcEEEEEE
Q 022111          191 KMYNGIWKMDCFPALQMHSDWVRSVAWAPNLGLPKSTIASASQDGTVVIWTCAKEGEQWEGRVLK----DFKTPVWSVSW  266 (302)
Q Consensus       191 d~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~----~~~~~v~~~~~  266 (302)
                      |++++.    ......+|...|.+++|+|++    ++|++|+.|++|++||++.. .........    ++...|.+++|
T Consensus       178 D~~~~~----~~~~~~~~~~~v~~v~wspdg----~~lasgs~dg~v~iwd~~~~-~~~~~~~~~~~~~~~~~~v~~v~w  248 (434)
T 2oit_A          178 QVTETV----KVCATLPSTVAVTSVCWSPKG----KQLAVGKQNGTVVQYLPTLQ-EKKVIPCPPFYESDHPVRVLDVLW  248 (434)
T ss_dssp             EESSSE----EEEEEECGGGCEEEEEECTTS----SCEEEEETTSCEEEECTTCC-EEEEECCCTTCCTTSCEEEEEEEE
T ss_pred             EcCCCc----ceeeccCCCCceeEEEEcCCC----CEEEEEcCCCcEEEEccCCc-ccccccCCcccCCCCceeEEEEEE
Confidence            998762    223445688999999999995    78999999999999998721 111000111    12337999999


Q ss_pred             ccCCCEEEEec-CC-------ceEEeeecC
Q 022111          267 SLTGNLLAVAD-AN-------NVTLWKEAV  288 (302)
Q Consensus       267 spdg~~la~~~-~d-------~i~~w~~~~  288 (302)
                      ++++.++++.+ .+       .+++|+...
T Consensus       249 ~~~~~~l~~~~~~dg~~~~~~~v~i~~l~~  278 (434)
T 2oit_A          249 IGTYVFAIVYAAADGTLETSPDVVMALLPK  278 (434)
T ss_dssp             EETTEEEEEEEETTCCSSSCCEEEEEECCC
T ss_pred             ecCceEEEEEccCCCccCCCCceEEEEecc
Confidence            99988875542 11       388999743

>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1

Probab=99.86  E-value=1.3e-18  Score=150.43  Aligned_cols=243  Identities=14%  Similarity=0.127  Sum_probs=154.3

Q ss_pred             EEEEeeCCCcEEEEeecC-CCceEEEEecCcccCeEEEEeeCCCCCCEEEEEeCC-CeEEEEEcC--CCCceeEEEEecC
Q 022111           25 RLATASSDSSIKIIGLSN-SASQHLATLKGHRGPVWQVAWAHPKFGSILASCSYD-GQVIIWKEG--NQNDWTQAHTFND  100 (302)
Q Consensus        25 ~l~s~~~d~~v~lw~~~~-~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~s~D-~~i~iwd~~--~~~~~~~~~~~~~  100 (302)
                      .+++++.|+.|++|++.. +..+.+..+ .|...+..++|+++  +++|++++.+ +.|++|++.  ++ ....+..+..
T Consensus         7 l~~~~~~~~~v~~~~~~~~~~~~~~~~~-~~~~~~~~~~~spd--g~~l~~~~~~~~~v~~~~~~~~~~-~~~~~~~~~~   82 (343)
T 1ri6_A            7 VYIASPESQQIHVWNLNHEGALTLTQVV-DVPGQVQPMVVSPD--KRYLYVGVRPEFRVLAYRIAPDDG-ALTFAAESAL   82 (343)
T ss_dssp             EEEEEGGGTEEEEEEECTTSCEEEEEEE-ECSSCCCCEEECTT--SSEEEEEETTTTEEEEEEECTTTC-CEEEEEEEEC
T ss_pred             EEEeCCCCCeEEEEEECCCCcEEEeeeE-ecCCCCceEEECCC--CCEEEEeecCCCeEEEEEecCCCC-ceeecccccc
Confidence            444557899999999953 222333333 46778889999864  7888888776 999999986  32 2334444544


Q ss_pred             CCCCeeEEEecCCCCCcEEEEEe-cCCcEEEEEecCCCCeeeeeecccCCCCeEEEEeCCCCCCCceeecccCCCceeEE
Q 022111          101 HKSSVNSIAWAPHELGLSLACGS-SDGNISVFTATADGGWDTTRIDQAHPVGVTSVSWAPAMAPGALVGLGLLDPVQKLA  179 (302)
Q Consensus       101 h~~~i~~l~~~pd~~~~~l~sg~-~d~~v~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~  179 (302)
                      +. .+..++|+|+  +..|++++ .++.|.+|++............ .....+.+++|+|++              ++|+
T Consensus        83 ~~-~~~~~~~s~d--g~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~-~~~~~~~~~~~s~dg--------------~~l~  144 (343)
T 1ri6_A           83 PG-SLTHISTDHQ--GQFVFVGSYNAGNVSVTRLEDGLPVGVVDVV-EGLDGCHSANISPDN--------------RTLW  144 (343)
T ss_dssp             SS-CCSEEEECTT--SSEEEEEETTTTEEEEEEEETTEEEEEEEEE-CCCTTBCCCEECTTS--------------SEEE
T ss_pred             CC-CCcEEEEcCC--CCEEEEEecCCCeEEEEECCCCccccccccc-cCCCCceEEEECCCC--------------CEEE
Confidence            33 7899999998  55565554 5889999998521111111111 223347778888864              5555


Q ss_pred             Eee-CCCcEEEEEEec-Ccccccccc--cccc-CCCceeEEEeeCCCCCCccEE-EEEecCCeEEEEEeccCCccee-ee
Q 022111          180 SCG-CDNTVKVWKMYN-GIWKMDCFP--ALQM-HSDWVRSVAWAPNLGLPKSTI-ASASQDGTVVIWTCAKEGEQWE-GR  252 (302)
Q Consensus       180 s~~-~D~~v~iwd~~~-~~~~~~~~~--~~~~-h~~~v~~v~~~p~~~~~~~~l-~s~s~D~~i~iwd~~~~~~~~~-~~  252 (302)
                      +++ .++.|++||+.+ +...  ...  .+.. ....+.+++|+|++    +.+ +++..++.|++|+++....... ..
T Consensus       145 ~~~~~~~~v~~~d~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~pdg----~~l~~~~~~~~~i~~~~~~~~~g~~~~~~  218 (343)
T 1ri6_A          145 VPALKQDRICLFTVSDDGHLV--AQDPAEVTTVEGAGPRHMVFHPNE----QYAYCVNELNSSVDVWELKDPHGNIECVQ  218 (343)
T ss_dssp             EEEGGGTEEEEEEECTTSCEE--EEEEEEEECSTTCCEEEEEECTTS----SEEEEEETTTTEEEEEESSCTTSCCEEEE
T ss_pred             EecCCCCEEEEEEecCCCcee--eecccccccCCCCCcceEEECCCC----CEEEEEeCCCCEEEEEEecCCCCcEEEEe
Confidence            555 899999999986 4211  111  1222 23568899999996    444 5556899999999964221111 11


Q ss_pred             eec----cC--CCcEEEEEEccCCCEEEEec-CC-ceEEeeecC-CceEEEe
Q 022111          253 VLK----DF--KTPVWSVSWSLTGNLLAVAD-AN-NVTLWKEAV-DGEWQQV  295 (302)
Q Consensus       253 ~~~----~~--~~~v~~~~~spdg~~la~~~-~d-~i~~w~~~~-~~~~~~~  295 (302)
                      ...    .+  ...+..++|+|+|++|+++. .+ .|.+|+... .+.+...
T Consensus       219 ~~~~~~~~~~~~~~~~~i~~s~dg~~l~v~~~~~~~i~v~d~~~~~~~~~~~  270 (343)
T 1ri6_A          219 TLDMMPENFSDTRWAADIHITPDGRHLYACDRTASLITVFSVSEDGSVLSKE  270 (343)
T ss_dssp             EEECSCTTCCSCCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCCEEEE
T ss_pred             eccccCccccccCCccceEECCCCCEEEEEecCCCEEEEEEEcCCCCceEEe
Confidence            111    11  23567899999999887554 44 799999863 3334443

>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}

Probab=99.86  E-value=4e-19  Score=153.54  Aligned_cols=250  Identities=11%  Similarity=0.040  Sum_probs=161.0

Q ss_pred             cccceeEEEEccCCCEEEEeeC-CCcEEEEeecCCCceEEEEecCcccCeEEEEeeCCCCCCEEEEEeCCC---eEEEEE
Q 022111           10 HEDTVHDVAMDFYGKRLATASS-DSSIKIIGLSNSASQHLATLKGHRGPVWQVAWAHPKFGSILASCSYDG---QVIIWK   85 (302)
Q Consensus        10 h~~~v~~~~~s~~~~~l~s~~~-d~~v~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~s~D~---~i~iwd   85 (302)
                      +...+ .++|+|++++|++++. ++.|++||...... ....+..+..+..+++|+++  +++|+++..++   .|.+||
T Consensus        39 ~~~~~-~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~-~~~~~~~~~~~~~~~~~s~d--g~~l~~~~~~~~~~~i~v~d  114 (331)
T 3u4y_A           39 GYDFV-DTAITSDCSNVVVTSDFCQTLVQIETQLEPP-KVVAIQEGQSSMADVDITPD--DQFAVTVTGLNHPFNMQSYS  114 (331)
T ss_dssp             CCCEE-EEEECSSSCEEEEEESTTCEEEEEECSSSSC-EEEEEEECSSCCCCEEECTT--SSEEEECCCSSSSCEEEEEE
T ss_pred             cCCcc-eEEEcCCCCEEEEEeCCCCeEEEEECCCCce-eEEecccCCCCccceEECCC--CCEEEEecCCCCcccEEEEE
Confidence            34455 8999999997776665 88999999866432 14455556666555999864  78888555442   999999


Q ss_pred             cCCCCceeEEEEecCCCCCeeEEEecCCCCCc-EEEEEecCCc-EEEEEecCCCCeeee-eecccCCCCeEEEEeCCCCC
Q 022111           86 EGNQNDWTQAHTFNDHKSSVNSIAWAPHELGL-SLACGSSDGN-ISVFTATADGGWDTT-RIDQAHPVGVTSVSWAPAMA  162 (302)
Q Consensus        86 ~~~~~~~~~~~~~~~h~~~i~~l~~~pd~~~~-~l~sg~~d~~-v~~~~~~~~~~~~~~-~~~~~h~~~v~~~~~~~~~~  162 (302)
                      +.+..   ....+.. ...+.+++|+|+  +. +++++..++. +.+|++...+..... ............+.|+|++ 
T Consensus       115 ~~~~~---~~~~~~~-~~~~~~~~~spd--g~~l~~~~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~spdg-  187 (331)
T 3u4y_A          115 FLKNK---FISTIPI-PYDAVGIAISPN--GNGLILIDRSSANTVRRFKIDADGVLFDTGQEFISGGTRPFNITFTPDG-  187 (331)
T ss_dssp             TTTTE---EEEEEEC-CTTEEEEEECTT--SSCEEEEEETTTTEEEEEEECTTCCEEEEEEEEECSSSSEEEEEECTTS-
T ss_pred             CCCCC---eEEEEEC-CCCccceEECCC--CCEEEEEecCCCceEEEEEECCCCcEeecCCccccCCCCccceEECCCC-
Confidence            97653   3444443 345689999998  44 4555566688 999998755432111 0001233457888998864 


Q ss_pred             CCceeecccCCCceeEEEeeCCCcEEEEEEecCccccccccccccCCCceeEEEeeCCCCCCccEE-EEEecCCeEEEEE
Q 022111          163 PGALVGLGLLDPVQKLASCGCDNTVKVWKMYNGIWKMDCFPALQMHSDWVRSVAWAPNLGLPKSTI-ASASQDGTVVIWT  241 (302)
Q Consensus       163 ~~~~~~~~~~~~~~~l~s~~~D~~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~l-~s~s~D~~i~iwd  241 (302)
                                  ...++++..++.|++||+.++.. ...+..+. +...+.+++|+|++    ++| ++...++.|.+||
T Consensus       188 ------------~~l~v~~~~~~~v~v~d~~~~~~-~~~~~~~~-~~~~~~~~~~spdg----~~l~v~~~~~~~i~~~d  249 (331)
T 3u4y_A          188 ------------NFAFVANLIGNSIGILETQNPEN-ITLLNAVG-TNNLPGTIVVSRDG----STVYVLTESTVDVFNFN  249 (331)
T ss_dssp             ------------SEEEEEETTTTEEEEEECSSTTS-CEEEEEEE-CSSCCCCEEECTTS----SEEEEECSSEEEEEEEE
T ss_pred             ------------CEEEEEeCCCCeEEEEECCCCcc-cceeeecc-CCCCCceEEECCCC----CEEEEEEcCCCEEEEEE
Confidence                        13556667789999999986632 01122333 33567899999996    544 4555688899999


Q ss_pred             eccCCcceeeeeecc---CCC---cEEEEEEccCCCEEEEecCC--ceEEeeecC
Q 022111          242 CAKEGEQWEGRVLKD---FKT---PVWSVSWSLTGNLLAVADAN--NVTLWKEAV  288 (302)
Q Consensus       242 ~~~~~~~~~~~~~~~---~~~---~v~~~~~spdg~~la~~~~d--~i~~w~~~~  288 (302)
                      +..............   ...   ....++|+|||++|++++.+  .|.+|+...
T Consensus       250 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~  304 (331)
T 3u4y_A          250 QLSGTLSFVKSFGHGLLIDPRPLFGANQMALNKTETKLFISANISRELKVFTISG  304 (331)
T ss_dssp             TTTTEEEEEEEEECCCCCCCGGGTTCCCEEECTTSSEEEEEETTTTEEEEEETTS
T ss_pred             CCCCceeeecccccccccCCCCcccccceEECCCCCEEEEecCCCCcEEEEEecC
Confidence            875321111111111   111   12458999999988766554  699999753

>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24

Probab=99.86  E-value=1.2e-20  Score=180.16  Aligned_cols=231  Identities=9%  Similarity=0.082  Sum_probs=154.2

Q ss_pred             ceeEEEEccCCCEEEEeeCCCcEEEEeecCCCceEEEEecCccc---CeEEEEeeCCCCCCEEEEEeCC---------Ce
Q 022111           13 TVHDVAMDFYGKRLATASSDSSIKIIGLSNSASQHLATLKGHRG---PVWQVAWAHPKFGSILASCSYD---------GQ   80 (302)
Q Consensus        13 ~v~~~~~s~~~~~l~s~~~d~~v~lw~~~~~~~~~~~~~~~h~~---~v~~v~~~~~~~~~~l~s~s~D---------~~   80 (302)
                      .+.+++|+|||+++++ +.|++|++||..++.  ....+.+|..   .|.+++|+|+  |++|++++.+         +.
T Consensus        18 ~~~~~~~spdg~~~~~-~~dg~i~~~d~~~g~--~~~~~~~~~~~~~~v~~~~~SpD--g~~l~~~~~~~~~~~~~~~~~   92 (723)
T 1xfd_A           18 HDPEAKWISDTEFIYR-EQKGTVRLWNVETNT--STVLIEGKKIESLRAIRYEISPD--REYALFSYNVEPIYQHSYTGY   92 (723)
T ss_dssp             CCCCCCBSSSSCBCCC-CSSSCEEEBCGGGCC--CEEEECTTTTTTTTCSEEEECTT--SSEEEEEESCCCCSSSCCCSE
T ss_pred             cccccEEcCCCcEEEE-eCCCCEEEEECCCCc--EEEEeccccccccccceEEECCC--CCEEEEEecCccceeecceee
Confidence            4677899999997776 789999999987643  3344555654   4899999875  8999998875         77


Q ss_pred             EEEEEcCCCCceeEEEEecCCCCCeeEEEecCCCCCcEEEEEecCCcEEEEEecCCCCeeeeeecccCCC----------
Q 022111           81 VIIWKEGNQNDWTQAHTFNDHKSSVNSIAWAPHELGLSLACGSSDGNISVFTATADGGWDTTRIDQAHPV----------  150 (302)
Q Consensus        81 i~iwd~~~~~~~~~~~~~~~h~~~i~~l~~~pd~~~~~l~sg~~d~~v~~~~~~~~~~~~~~~~~~~h~~----------  150 (302)
                      +.+||+.++.. ..+.....|...+..++|+||  |+.||.++. +.|++|++.......+..   .+..          
T Consensus        93 i~~~d~~~~~~-~~l~~~~~~~~~~~~~~~SPd--G~~la~~~~-~~i~~~~~~~g~~~~~~~---~~~~~~~~~g~~~~  165 (723)
T 1xfd_A           93 YVLSKIPHGDP-QSLDPPEVSNAKLQYAGWGPK--GQQLIFIFE-NNIYYCAHVGKQAIRVVS---TGKEGVIYNGLSDW  165 (723)
T ss_dssp             EEEEESSSCCC-EECCCTTCCSCCCSBCCBCSS--TTCEEEEET-TEEEEESSSSSCCEEEEC---CCBTTTEEEEECCH
T ss_pred             EEEEECCCCce-EeccCCccccccccccEECCC--CCEEEEEEC-CeEEEEECCCCceEEEec---CCCCCceECcccce
Confidence            88999977542 222233345556899999999  678888876 789999886543322221   2222          


Q ss_pred             --------CeEEEEeCCCCCCCceeecccCCCceeEEEeeCCC----------------------------------cEE
Q 022111          151 --------GVTSVSWAPAMAPGALVGLGLLDPVQKLASCGCDN----------------------------------TVK  188 (302)
Q Consensus       151 --------~v~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~D~----------------------------------~v~  188 (302)
                              .+.++.|+|++              +.|++++.|+                                  .|+
T Consensus       166 v~~ee~~~~~~~~~~SpDg--------------~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~l~  231 (723)
T 1xfd_A          166 LYEEEILKTHIAHWWSPDG--------------TRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISLH  231 (723)
T ss_dssp             HHHHTTSSSSEEEEECTTS--------------SEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEEE
T ss_pred             eEEEEeccCcceEEECCCC--------------CEEEEEEECCCccceEEeeccCCcCCCcceeccCCCCCCCCCeeEEE
Confidence                    23789999974              5666665432                                  788


Q ss_pred             EEEEecCcccccc--ccccccCCCceeEEEeeCCCCCCccEEEEEec----CCeEEEEEeccCCcceeeeee-ccCCCcE
Q 022111          189 VWKMYNGIWKMDC--FPALQMHSDWVRSVAWAPNLGLPKSTIASASQ----DGTVVIWTCAKEGEQWEGRVL-KDFKTPV  261 (302)
Q Consensus       189 iwd~~~~~~~~~~--~~~~~~h~~~v~~v~~~p~~~~~~~~l~s~s~----D~~i~iwd~~~~~~~~~~~~~-~~~~~~v  261 (302)
                      +||+.++......  ...+..|...+.+++|+||+    +.|++.+.    +..|++||+.....  . .+. ..+...+
T Consensus       232 ~~d~~~~~~~~~l~~~~~~~~~~~~~~~~~~SpDg----~~l~~~~~~~~~~~~i~~~d~~~g~~--~-~~~~~~~~~~~  304 (723)
T 1xfd_A          232 VIGLNGPTHDLEMMPPDDPRMREYYITMVKWATST----KVAVTWLNRAQNVSILTLCDATTGVC--T-KKHEDESEAWL  304 (723)
T ss_dssp             EEESSSSCCCEECCCCCCGGGSSEEEEEEEESSSS----EEEEEEEETTSCEEEEEEEETTTCCE--E-EEEEEECSSCC
T ss_pred             EEECCCCceeEEeeCCccCCCccceeEEEEEeCCC----eEEEEEEcCCCCeEEEEEEeCCCCcc--e-EEEEeccCCEE
Confidence            9998765311110  01122346789999999996    66766653    35799999865421  1 121 1222333


Q ss_pred             ----EEEEEccCCCEEEEe
Q 022111          262 ----WSVSWSLTGNLLAVA  276 (302)
Q Consensus       262 ----~~~~~spdg~~la~~  276 (302)
                          ..++|||||+.|+.+
T Consensus       305 ~~~~~~~~~spdg~~l~~~  323 (723)
T 1xfd_A          305 HRQNEEPVFSKDGRKFFFI  323 (723)
T ss_dssp             CCCCCCCEECTTSCSEEEE
T ss_pred             eccCCCceEcCCCCeEEEE
Confidence                278999999987754

>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*

Probab=99.85  E-value=7.1e-19  Score=162.86  Aligned_cols=255  Identities=9%  Similarity=0.082  Sum_probs=175.4

Q ss_pred             cccceeEEEEcc----CCCEEEEee-CCCcEEEEeecCCCceEEEEecC----------ccc-CeEEEEeeCCCCCCEEE
Q 022111           10 HEDTVHDVAMDF----YGKRLATAS-SDSSIKIIGLSNSASQHLATLKG----------HRG-PVWQVAWAHPKFGSILA   73 (302)
Q Consensus        10 h~~~v~~~~~s~----~~~~l~s~~-~d~~v~lw~~~~~~~~~~~~~~~----------h~~-~v~~v~~~~~~~~~~l~   73 (302)
                      +...+..++|+|    ||++|++++ .+++|.+||...  .+++..+..          |.. .+..+.++++ .+.+++
T Consensus       220 ~g~~p~~va~sp~~~~dg~~l~v~~~~~~~v~v~D~~t--~~~~~~i~~~g~~~~~~~~~~~~~v~~i~~s~~-~~~~~v  296 (543)
T 1nir_A          220 IGIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGET--LEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHE-HPEFIV  296 (543)
T ss_dssp             CCSEEEEEEECCSTTCTTTEEEEEEEESSEEEEEETTT--CCEEEEEECCEECSSSCCEESCCCEEEEEECSS-SSEEEE
T ss_pred             cCCCcceEEeCCCcCCCCCEEEEEEccCCeEEEEeccc--cccceeecccCcccCccccccCCceEEEEECCC-CCEEEE
Confidence            344578899999    999999988 489999999754  344555443          323 6888999875 356788


Q ss_pred             EEeCCCeEEEEEcCCCCceeEEEEecCCCCCeeEEEecCCCCCcEE-EEEecCCcEEEEEecCCCCeeeeee-cccCCCC
Q 022111           74 SCSYDGQVIIWKEGNQNDWTQAHTFNDHKSSVNSIAWAPHELGLSL-ACGSSDGNISVFTATADGGWDTTRI-DQAHPVG  151 (302)
Q Consensus        74 s~s~D~~i~iwd~~~~~~~~~~~~~~~h~~~i~~l~~~pd~~~~~l-~sg~~d~~v~~~~~~~~~~~~~~~~-~~~h~~~  151 (302)
                      +...+++|.+||..+..... ...+. +...+..++|+|+  +.++ +++..+++|.+||..+......... ...|...
T Consensus       297 s~~~~g~i~vvd~~~~~~l~-~~~i~-~~~~~~~~~~spd--g~~l~va~~~~~~v~v~D~~tg~l~~~i~~g~~ph~g~  372 (543)
T 1nir_A          297 NVKETGKVLLVNYKDIDNLT-VTSIG-AAPFLHDGGWDSS--HRYFMTAANNSNKVAVIDSKDRRLSALVDVGKTPHPGR  372 (543)
T ss_dssp             EETTTTEEEEEECTTSSSCE-EEEEE-CCSSCCCEEECTT--SCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSBCCTT
T ss_pred             EECCCCeEEEEEecCCCcce-eEEec-cCcCccCceECCC--CCEEEEEecCCCeEEEEECCCCeEEEeeccCCCCCCCC
Confidence            88999999999987653221 22333 5667889999998  5554 4556789999999875422221111 1124433


Q ss_pred             eEEEEeCCCCCCCceeecccCCCceeEEEee-CCCcEEEEEEecCc---cccccccccccCCCceeEEEeeCCCCCCccE
Q 022111          152 VTSVSWAPAMAPGALVGLGLLDPVQKLASCG-CDNTVKVWKMYNGI---WKMDCFPALQMHSDWVRSVAWAPNLGLPKST  227 (302)
Q Consensus       152 v~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~-~D~~v~iwd~~~~~---~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~  227 (302)
                      ...+ ++|+.             +..++|+. .|++|.|||+.+..   ...++++++.+|...+..|+|+|++    +.
T Consensus       373 g~~~-~~p~~-------------g~~~~s~~~~d~~V~v~d~~~~~~~~~~~~~v~~l~~~g~~~~~v~~~pdg----~~  434 (543)
T 1nir_A          373 GANF-VHPKY-------------GPVWSTSHLGDGSISLIGTDPKNHPQYAWKKVAELQGQGGGSLFIKTHPKS----SH  434 (543)
T ss_dssp             CEEE-EETTT-------------EEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECSCSCCCCEECCTTC----CE
T ss_pred             Cccc-CCCCC-------------ccEEEeccCCCceEEEEEeCCCCCchhcCeEEEEEEcCCCCceEEEcCCCC----Cc
Confidence            2222 23432             46678875 68999999997621   1135677888898889999999996    77


Q ss_pred             EEEEe-------cCCeEEEEEeccCCcceeeee-------eccCCCcEEEEEEccCCCEEEEe--c---CC-ceEEeeec
Q 022111          228 IASAS-------QDGTVVIWTCAKEGEQWEGRV-------LKDFKTPVWSVSWSLTGNLLAVA--D---AN-NVTLWKEA  287 (302)
Q Consensus       228 l~s~s-------~D~~i~iwd~~~~~~~~~~~~-------~~~~~~~v~~~~~spdg~~la~~--~---~d-~i~~w~~~  287 (302)
                      |.+++       .+++|++||+.+...... .+       +.++...++.++|+|||+.|.++  +   .+ .|.+||..
T Consensus       435 l~v~~~~~~~~~~~~~v~v~d~~~~~~~~~-~~~v~~~~~~~~~~~~~~~~~~~~~g~~~~~s~~~~~~~~~~i~v~D~~  513 (543)
T 1nir_A          435 LYVDTTFNPDARISQSVAVFDLKNLDAKYQ-VLPIAEWADLGEGAKRVVQPEYNKRGDEVWFSVWNGKNDSSALVVVDDK  513 (543)
T ss_dssp             EEECCTTCSSHHHHTCEEEEETTCTTSCCE-EECHHHHHCCCSSCCEEEEEEECSSSSEEEEEEECCTTSCCEEEEEETT
T ss_pred             EEEecCCCCCcccCceEEEEECCCCCCCeE-EeechhhcccCCCCCceEeccCCCCCCEEEEEeecCCCCCCeEEEEECC
Confidence            88877       378999999986543211 11       12445679999999999999866  2   23 79999976


Q ss_pred             CCc
Q 022111          288 VDG  290 (302)
Q Consensus       288 ~~~  290 (302)
                      ...
T Consensus       514 t~~  516 (543)
T 1nir_A          514 TLK  516 (543)
T ss_dssp             TTE
T ss_pred             Cce
Confidence            533

>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}

Probab=99.85  E-value=6e-20  Score=175.84  Aligned_cols=242  Identities=12%  Similarity=0.118  Sum_probs=165.2

Q ss_pred             ceeEEEEccCCCEEEEeeCCCcEEEEeecCCCceEEEEecCcccCeEEEEeeCCCCCCEEEEEeCCCeEEEEEcCCCCce
Q 022111           13 TVHDVAMDFYGKRLATASSDSSIKIIGLSNSASQHLATLKGHRGPVWQVAWAHPKFGSILASCSYDGQVIIWKEGNQNDW   92 (302)
Q Consensus        13 ~v~~~~~s~~~~~l~s~~~d~~v~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~s~D~~i~iwd~~~~~~~   92 (302)
                      .|.+++|||||++|++++. ++|++|++..........+..|...+..++|+|+  |++|++++ ++.|.+||+.++.  
T Consensus       110 ~v~~~~~SpDg~~l~~~~~-~~i~~~d~~~~~~~~~~~l~~~~~~~~~~~~SPD--G~~la~~~-~~~i~~~d~~~g~--  183 (741)
T 2ecf_A          110 GIVDYQWSPDAQRLLFPLG-GELYLYDLKQEGKAAVRQLTHGEGFATDAKLSPK--GGFVSFIR-GRNLWVIDLASGR--  183 (741)
T ss_dssp             ESCCCEECTTSSEEEEEET-TEEEEEESSSCSTTSCCBCCCSSSCEEEEEECTT--SSEEEEEE-TTEEEEEETTTTE--
T ss_pred             CcceeEECCCCCEEEEEeC-CcEEEEECCCCCcceEEEcccCCcccccccCCCC--CCEEEEEe-CCcEEEEecCCCC--
Confidence            4788999999999998886 9999999875410023456678888999999875  89998887 4699999987642  


Q ss_pred             eEEEEecCCCCC----------------eeEEEecCCCCCcEEEEEecCC------------------------------
Q 022111           93 TQAHTFNDHKSS----------------VNSIAWAPHELGLSLACGSSDG------------------------------  126 (302)
Q Consensus        93 ~~~~~~~~h~~~----------------i~~l~~~pd~~~~~l~sg~~d~------------------------------  126 (302)
                       .......+...                +..++|+||  |..|++++.|+                              
T Consensus       184 -~~~~~~~~~~~~~~g~~~~v~~~~~~~~~~~~~SpD--g~~l~~~~~d~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~  260 (741)
T 2ecf_A          184 -QMQLTADGSTTIGNGIAEFVADEEMDRHTGYWWAPD--DSAIAYARIDESPVPVQKRYEVYADRTDVIEQRYPAAGDAN  260 (741)
T ss_dssp             -EEECCCCCCSSEEESCCCHHHHHHSCCCCSEEECTT--SSCEEEEEEECTTSCEEEEEEECSSCEEEEEEECCBTTSCC
T ss_pred             -EEEeccCCccceeccccceeeeeccccccceEECCC--CCEEEEEEEcCCCCceEecCCCCCCcccceEeecCCCCCCC
Confidence             22222223322                478999998  67888887765                              


Q ss_pred             ---cEEEEEecC-CCCeeeeeecccCCCCeEEEEeCCCCCCCceeecccCCCceeEEEee-----CCCcEEEEEEecCcc
Q 022111          127 ---NISVFTATA-DGGWDTTRIDQAHPVGVTSVSWAPAMAPGALVGLGLLDPVQKLASCG-----CDNTVKVWKMYNGIW  197 (302)
Q Consensus       127 ---~v~~~~~~~-~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~-----~D~~v~iwd~~~~~~  197 (302)
                         .|.+||+.. ..... ......|...+..++| |++              +.|+.++     .+..|++||+.++..
T Consensus       261 ~~~~l~~~d~~~~~~~~~-~~~~~~~~~~~~~~~~-pDg--------------~~l~~~~~~~~~~~~~i~~~d~~~g~~  324 (741)
T 2ecf_A          261 VQVKLGVISPAEQAQTQW-IDLGKEQDIYLARVNW-RDP--------------QHLSFQRQSRDQKKLDLVEVTLASNQQ  324 (741)
T ss_dssp             CEEEEEEECSSTTCCCEE-ECCCSCSSEEEEEEEE-EET--------------TEEEEEEEETTSSEEEEEEEETTTCCE
T ss_pred             CeeEEEEEECCCCCceEE-ecCCCCcceEEEEEEe-CCC--------------CEEEEEEecccCCeEEEEEEECCCCce
Confidence               677777754 32211 1111135667889999 974              5666544     356799999877632


Q ss_pred             ccccccccccCC-C---ceeEEEeeCCCCCCccEEEEEecCCeEEEEEeccCCcceeeeeeccCCCcEEEE-EEccCCCE
Q 022111          198 KMDCFPALQMHS-D---WVRSVAWAPNLGLPKSTIASASQDGTVVIWTCAKEGEQWEGRVLKDFKTPVWSV-SWSLTGNL  272 (302)
Q Consensus       198 ~~~~~~~~~~h~-~---~v~~v~~~p~~~~~~~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~-~~spdg~~  272 (302)
                          ...+..|. .   .+.+++|+||+    +.+++++.|+.++||.++....   ...+..+...+.++ +|||||+.
T Consensus       325 ----~~~~~~~~~~~~~~~~~~~~spdg----~~~~~~~~~g~~~l~~~~~~~~---~~~l~~~~~~v~~~~~~s~dg~~  393 (741)
T 2ecf_A          325 ----RVLAHETSPTWVPLHNSLRFLDDG----SILWSSERTGFQHLYRIDSKGK---AAALTHGNWSVDELLAVDEKAGL  393 (741)
T ss_dssp             ----EEEEEEECSSCCCCCSCCEECTTS----CEEEEECTTSSCEEEEECSSSC---EEESCCSSSCEEEEEEEETTTTE
T ss_pred             ----EEEEEcCCCCcCCcCCceEECCCC----eEEEEecCCCccEEEEEcCCCC---eeeeeecceEEEeEeEEeCCCCE
Confidence                12222232 2   35689999996    5888999999999998764322   13334555678777 59999987


Q ss_pred             EEEe-cCC---ceEEeeecCCc
Q 022111          273 LAVA-DAN---NVTLWKEAVDG  290 (302)
Q Consensus       273 la~~-~~d---~i~~w~~~~~~  290 (302)
                      |+.. +.+   .++||+...++
T Consensus       394 l~~~~~~~~~~~~~l~~~~~~g  415 (741)
T 2ecf_A          394 AYFRAGIESARESQIYAVPLQG  415 (741)
T ss_dssp             EEEEECSSCTTCBEEEEEETTC
T ss_pred             EEEEEeCCCCceEEEEEEEcCC
Confidence            7544 433   58999986534

>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A

Probab=99.85  E-value=2.4e-20  Score=174.09  Aligned_cols=233  Identities=10%  Similarity=0.077  Sum_probs=163.0

Q ss_pred             cccceeEEEEccCCCEEEEeeC-CCcEEEEeecCCCceEEEEecCcc-cCeEEEEeeCCCCCCEEEEEeC---CCeEEEE
Q 022111           10 HEDTVHDVAMDFYGKRLATASS-DSSIKIIGLSNSASQHLATLKGHR-GPVWQVAWAHPKFGSILASCSY---DGQVIIW   84 (302)
Q Consensus        10 h~~~v~~~~~s~~~~~l~s~~~-d~~v~lw~~~~~~~~~~~~~~~h~-~~v~~v~~~~~~~~~~l~s~s~---D~~i~iw   84 (302)
                      +..+|++++|+|||++||.++. |++++||++..+  + ...+..|. ..+..++|+|+   +++++++.   +...+||
T Consensus        20 ~~~~~~~~~~~~DG~~la~~s~~~g~~~lw~~~~g--~-~~~lt~~~~~~~~~~~~spd---~~l~~~~~~~g~~~~~l~   93 (582)
T 3o4h_A           20 IAVEKYSLQGVVDGDKLLVVGFSEGSVNAYLYDGG--E-TVKLNREPINSVLDPHYGVG---RVILVRDVSKGAEQHALF   93 (582)
T ss_dssp             HHSCEEEEEEEETTTEEEEEEEETTEEEEEEEETT--E-EEECCSSCCSEECEECTTCS---EEEEEEECSTTSCCEEEE
T ss_pred             hccchheeecCCCCCeEEEEEccCCceeEEEEcCC--C-cEeeecccccccccccCCCC---eEEEEeccCCCCcceEEE
Confidence            3568999999999999999887 999999998543  2 34455555 57899999853   67777765   5667787


Q ss_pred             EcCC--CCceeEEEEecCCCCCeeEEEecCCCCCcEEEEEecCCcEEEEEecCCCCeeeeeecccCCCCeEEEEeCCCCC
Q 022111           85 KEGN--QNDWTQAHTFNDHKSSVNSIAWAPHELGLSLACGSSDGNISVFTATADGGWDTTRIDQAHPVGVTSVSWAPAMA  162 (302)
Q Consensus        85 d~~~--~~~~~~~~~~~~h~~~i~~l~~~pd~~~~~l~sg~~d~~v~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~  162 (302)
                      .+..  ...  .. .+... ..+...+|+||..+..+++++.++ +.+||+.....   ..+. .+..  .++.|+|+  
T Consensus        94 ~~~~~~~g~--~~-~l~~~-~~~~~~~~s~dg~~~~~~s~~~~~-~~l~d~~~g~~---~~l~-~~~~--~~~~~spD--  160 (582)
T 3o4h_A           94 KVNTSRPGE--EQ-RLEAV-KPMRILSGVDTGEAVVFTGATEDR-VALYALDGGGL---RELA-RLPG--FGFVSDIR--  160 (582)
T ss_dssp             EEETTSTTC--CE-ECTTS-CSBEEEEEEECSSCEEEEEECSSC-EEEEEEETTEE---EEEE-EESS--CEEEEEEE--
T ss_pred             EEeccCCCc--cc-cccCC-CCceeeeeCCCCCeEEEEecCCCC-ceEEEccCCcE---EEee-cCCC--ceEEECCC--
Confidence            6643  221  11 33322 234567888885445566655555 45999875422   2222 1222  67888886  


Q ss_pred             CCceeecccCCCceeEEEeeCC----CcEEEEEEecCccccccccccccCCCceeEEEeeCCCCCCccEEEEEecCC--e
Q 022111          163 PGALVGLGLLDPVQKLASCGCD----NTVKVWKMYNGIWKMDCFPALQMHSDWVRSVAWAPNLGLPKSTIASASQDG--T  236 (302)
Q Consensus       163 ~~~~~~~~~~~~~~~l~s~~~D----~~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~l~s~s~D~--~  236 (302)
                                  |+.|++++.|    ..|++||+.++.     ...+..|.+.+.+++|+||+    +.|++++.++  .
T Consensus       161 ------------G~~la~~~~~~~~~~~i~~~d~~~g~-----~~~l~~~~~~~~~~~~SpDG----~~l~~~~~~~~~~  219 (582)
T 3o4h_A          161 ------------GDLIAGLGFFGGGRVSLFTSNLSSGG-----LRVFDSGEGSFSSASISPGM----KVTAGLETAREAR  219 (582)
T ss_dssp             ------------TTEEEEEEEEETTEEEEEEEETTTCC-----CEEECCSSCEEEEEEECTTS----CEEEEEECSSCEE
T ss_pred             ------------CCEEEEEEEcCCCCeEEEEEcCCCCC-----ceEeecCCCccccceECCCC----CEEEEccCCCeeE
Confidence                        4788887777    779999987763     23567788899999999996    7788888888  8


Q ss_pred             EEEEEeccCCcceeeeeeccCCCcEEEEE--------EccCCCEEEEecCC-ceEEeee
Q 022111          237 VVIWTCAKEGEQWEGRVLKDFKTPVWSVS--------WSLTGNLLAVADAN-NVTLWKE  286 (302)
Q Consensus       237 i~iwd~~~~~~~~~~~~~~~~~~~v~~~~--------~spdg~~la~~~~d-~i~~w~~  286 (302)
                      |++||+.....    ..+.++...+.+++        |||||.++++++.+ .++||+.
T Consensus       220 i~~~d~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~g~~~l~~~  274 (582)
T 3o4h_A          220 LVTVDPRDGSV----EDLELPSKDFSSYRPTAITWLGYLPDGRLAVVARREGRSAVFID  274 (582)
T ss_dssp             EEEECTTTCCE----EECCCSCSHHHHHCCSEEEEEEECTTSCEEEEEEETTEEEEEET
T ss_pred             EEEEcCCCCcE----EEccCCCcChhhhhhccccceeEcCCCcEEEEEEcCCcEEEEEE
Confidence            99999875421    13445555555566        99999888888777 7999997

>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*

Probab=99.84  E-value=1.4e-18  Score=165.61  Aligned_cols=245  Identities=12%  Similarity=0.079  Sum_probs=162.5

Q ss_pred             ccccceeEEEEccCCCEEEEeeCCCcEEEEeecC-----CCceEEEEecCcccC--------------eEEEEeeCCCCC
Q 022111            9 GHEDTVHDVAMDFYGKRLATASSDSSIKIIGLSN-----SASQHLATLKGHRGP--------------VWQVAWAHPKFG   69 (302)
Q Consensus         9 ~h~~~v~~~~~s~~~~~l~s~~~d~~v~lw~~~~-----~~~~~~~~~~~h~~~--------------v~~v~~~~~~~~   69 (302)
                      .+...+.+++|+|||++||.+ .|++|++|++..     +...  .....+...              +.+++|+|+  |
T Consensus       118 ~~~~~~~~~~~SpdG~~la~~-~~~~i~v~~~~~~~~~~g~~~--~~~~~~~~~~~~g~~~~~ee~~~~~~~~~SpD--g  192 (706)
T 2z3z_A          118 DTNEETASLDFSPVGDRVAYV-RNHNLYIARGGKLGEGMSRAI--AVTIDGTETLVYGQAVHQREFGIEKGTFWSPK--G  192 (706)
T ss_dssp             CCTTCCTTCEECTTSSEEEEE-ETTEEEEEECBCTTSCCCCCE--ESCSCCBTTEEESSCCGGGCTTCCCSEEECTT--S
T ss_pred             CCcccccCCcCCCCCCEEEEE-ECCeEEEEecCcccccCCCcE--EeccCCCCCeEcccchhhhhcCCCceEEECCC--C
Confidence            456678889999999999985 689999999875     4322  222233332              478999875  8


Q ss_pred             CEEEEEe---------------------------------CCCeEEEEEcCCCCceeEEEEecCCCCCeeEEEecCCCCC
Q 022111           70 SILASCS---------------------------------YDGQVIIWKEGNQNDWTQAHTFNDHKSSVNSIAWAPHELG  116 (302)
Q Consensus        70 ~~l~s~s---------------------------------~D~~i~iwd~~~~~~~~~~~~~~~h~~~i~~l~~~pd~~~  116 (302)
                      ++|++++                                 .+..|.+||+.++.. ..+.....|...+.+++|+||  |
T Consensus       193 ~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~d~~~~~~-~~~~~~~~~~~~~~~~~~spd--g  269 (706)
T 2z3z_A          193 SCLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHHVTVGIYHLATGKT-VYLQTGEPKEKFLTNLSWSPD--E  269 (706)
T ss_dssp             SEEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCEEEEEEEETTTTEE-EECCCCSCTTCEEEEEEECTT--S
T ss_pred             CEEEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCCCCCeeEEEEEECCCCce-EeeccCCCCceeEeeEEEECC--C
Confidence            9999887                                 456799999876521 111111246778999999998  6


Q ss_pred             cEEEEEecCC-----cEEEEEecCCCCeeeeeecccCCC---CeEEEEeCC--CCCCCceeecccCCCceeEEEeeCCCc
Q 022111          117 LSLACGSSDG-----NISVFTATADGGWDTTRIDQAHPV---GVTSVSWAP--AMAPGALVGLGLLDPVQKLASCGCDNT  186 (302)
Q Consensus       117 ~~l~sg~~d~-----~v~~~~~~~~~~~~~~~~~~~h~~---~v~~~~~~~--~~~~~~~~~~~~~~~~~~l~s~~~D~~  186 (302)
                      ..|++++.++     .|.+||..+........ ...+..   .+..+.|+|  +              +++|++++.|+.
T Consensus       270 ~~l~~~~~~~~~~~~~v~~~d~~~g~~~~~~~-~~~~~~~~~~~~~~~~sp~~d--------------g~~l~~~~~~g~  334 (706)
T 2z3z_A          270 NILYVAEVNRAQNECKVNAYDAETGRFVRTLF-VETDKHYVEPLHPLTFLPGSN--------------NQFIWQSRRDGW  334 (706)
T ss_dssp             SEEEEEEECTTSCEEEEEEEETTTCCEEEEEE-EEECSSCCCCCSCCEECTTCS--------------SEEEEEECTTSS
T ss_pred             CEEEEEEeCCCCCeeEEEEEECCCCceeeEEE-EccCCCeECccCCceeecCCC--------------CEEEEEEccCCc
Confidence            6888887776     89999976542222111 111221   235678887  5              478899999999


Q ss_pred             EEEEEEecCccccccccccccCCCceeE-EEeeCCCCCCccEE-EEEecCC----eEEEEEeccCCcceeeeeeccCCCc
Q 022111          187 VKVWKMYNGIWKMDCFPALQMHSDWVRS-VAWAPNLGLPKSTI-ASASQDG----TVVIWTCAKEGEQWEGRVLKDFKTP  260 (302)
Q Consensus       187 v~iwd~~~~~~~~~~~~~~~~h~~~v~~-v~~~p~~~~~~~~l-~s~s~D~----~i~iwd~~~~~~~~~~~~~~~~~~~  260 (302)
                      ++||++....   .....+..|...+.+ ++|+|++    +.| ++++.++    .|..||.....    ...+ .+...
T Consensus       335 ~~l~~~~~~~---~~~~~l~~~~~~v~~~~~~spdg----~~l~~~~~~~~~~~~~l~~~d~~~~~----~~~l-~~~~~  402 (706)
T 2z3z_A          335 NHLYLYDTTG---RLIRQVTKGEWEVTNFAGFDPKG----TRLYFESTEASPLERHFYCIDIKGGK----TKDL-TPESG  402 (706)
T ss_dssp             CEEEEEETTS---CEEEECCCSSSCEEEEEEECTTS----SEEEEEESSSCTTCBEEEEEETTCCC----CEES-CCSSS
T ss_pred             cEEEEEECCC---CEEEecCCCCeEEEeeeEEcCCC----CEEEEEecCCCCceEEEEEEEcCCCC----ceec-cCCCc
Confidence            9999987221   223455667777877 8999996    445 4455554    44444543321    1122 24556


Q ss_pred             EEEEEEccCCCEEEEecCC-----ceEEeeecC
Q 022111          261 VWSVSWSLTGNLLAVADAN-----NVTLWKEAV  288 (302)
Q Consensus       261 v~~~~~spdg~~la~~~~d-----~i~~w~~~~  288 (302)
                      +.+++|||||++|+.+..+     .+.+|+...
T Consensus       403 ~~~~~~spdg~~l~~~~~~~~~p~~i~l~d~~~  435 (706)
T 2z3z_A          403 MHRTQLSPDGSAIIDIFQSPTVPRKVTVTNIGK  435 (706)
T ss_dssp             EEEEEECTTSSEEEEEEECSSCSCEEEEEESSS
T ss_pred             eEEEEECCCCCEEEEEecCCCCCcEEEEEECCC
Confidence            8999999999998776332     399999754

>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*

Probab=99.83  E-value=4.8e-19  Score=176.01  Aligned_cols=231  Identities=8%  Similarity=0.031  Sum_probs=174.4

Q ss_pred             ceeEEEEccCCCEEEEeeCCCcEEEEeecCCCceEEEEecC-----------cccCeEEEEee-CCCCCCEEEEEeCCCe
Q 022111           13 TVHDVAMDFYGKRLATASSDSSIKIIGLSNSASQHLATLKG-----------HRGPVWQVAWA-HPKFGSILASCSYDGQ   80 (302)
Q Consensus        13 ~v~~~~~s~~~~~l~s~~~d~~v~lw~~~~~~~~~~~~~~~-----------h~~~v~~v~~~-~~~~~~~l~s~s~D~~   80 (302)
                      .+...+|+|||++|+.+ .++.|++|++...   .+..+.+           |...+..++|+ |+  |++|++++ ++.
T Consensus       246 ~~~~~~~SpDG~~la~~-~~~~i~~~d~~~~---~l~~l~~~~~~~~~~~~~~~~~v~~~~~S~pd--G~~la~~~-~~~  318 (1045)
T 1k32_A          246 DYYPRHLNTDGRRILFS-KGGSIYIFNPDTE---KIEKIEIGDLESPEDRIISIPSKFAEDFSPLD--GDLIAFVS-RGQ  318 (1045)
T ss_dssp             SSCEEEEEESSSCEEEE-ETTEEEEECTTTC---CEEECCCCCCCBCCSEEEECGGGGEEEEEECG--GGCEEEEE-TTE
T ss_pred             CcceeeEcCCCCEEEEE-eCCEEEEecCCce---EeeeeccCcccccccccccccccceeeecCCC--CCEEEEEE-cCE
Confidence            35667999999999887 5899999998322   2334444           45578999998 75  88888877 789


Q ss_pred             EEEEEcCCCCceeEEEEecCCCC-CeeEEEecCCCCCcEEEEEecCCcEE-EEEecCCCCeeeeeecccCCCCeEEEEeC
Q 022111           81 VIIWKEGNQNDWTQAHTFNDHKS-SVNSIAWAPHELGLSLACGSSDGNIS-VFTATADGGWDTTRIDQAHPVGVTSVSWA  158 (302)
Q Consensus        81 i~iwd~~~~~~~~~~~~~~~h~~-~i~~l~~~pd~~~~~l~sg~~d~~v~-~~~~~~~~~~~~~~~~~~h~~~v~~~~~~  158 (302)
                      +.+|+.....    ...+..|.. .+..++|+ |  +..|+.++.+..+. +|+.....   ...+. .|...+..++|+
T Consensus       319 i~~~~~~~~~----~~~~~~~~~~~~~~~~~s-d--g~~l~~~s~~~~l~~~~d~~~~~---~~~l~-~~~~~~~~~~~S  387 (1045)
T 1k32_A          319 AFIQDVSGTY----VLKVPEPLRIRYVRRGGD-T--KVAFIHGTREGDFLGIYDYRTGK---AEKFE-ENLGNVFAMGVD  387 (1045)
T ss_dssp             EEEECTTSSB----EEECSCCSCEEEEEECSS-S--EEEEEEEETTEEEEEEEETTTCC---EEECC-CCCCSEEEEEEC
T ss_pred             EEEEcCCCCc----eEEccCCCcceEEeeeEc-C--CCeEEEEECCCceEEEEECCCCC---ceEec-CCccceeeeEEC
Confidence            9999986542    334566777 89999999 7  77888888888787 88875332   22333 566788999999


Q ss_pred             CCCCCCceeecccCCCceeEEEeeCCCcEEEEEEecCccccccccccccCCCceeEEEeeCCCCCCccEEEEEecCC---
Q 022111          159 PAMAPGALVGLGLLDPVQKLASCGCDNTVKVWKMYNGIWKMDCFPALQMHSDWVRSVAWAPNLGLPKSTIASASQDG---  235 (302)
Q Consensus       159 ~~~~~~~~~~~~~~~~~~~l~s~~~D~~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~l~s~s~D~---  235 (302)
                      |++              +.|++++.++.|++||+.++.    ....+.+|...|.+++|+||+    ++|++++.++   
T Consensus       388 pDG--------------~~la~~~~~~~v~~~d~~tg~----~~~~~~~~~~~v~~~~~SpDG----~~la~~~~~~~~~  445 (1045)
T 1k32_A          388 RNG--------------KFAVVANDRFEIMTVDLETGK----PTVIERSREAMITDFTISDNS----RFIAYGFPLKHGE  445 (1045)
T ss_dssp             TTS--------------SEEEEEETTSEEEEEETTTCC----EEEEEECSSSCCCCEEECTTS----CEEEEEEEECSST
T ss_pred             CCC--------------CEEEEECCCCeEEEEECCCCc----eEEeccCCCCCccceEECCCC----CeEEEEecCcccc
Confidence            974              789999999999999998763    223344788899999999996    7788887654   


Q ss_pred             -------eEEEEEeccCCcceeeeeeccCCCcEEEEEEccCCCEEEEecCC-ceEEeeec
Q 022111          236 -------TVVIWTCAKEGEQWEGRVLKDFKTPVWSVSWSLTGNLLAVADAN-NVTLWKEA  287 (302)
Q Consensus       236 -------~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~la~~~~d-~i~~w~~~  287 (302)
                             .|++||+....    ...+..+...+.+++|+|||++|+.++.+ ...+|+..
T Consensus       446 ~~~~~~~~i~l~d~~~g~----~~~l~~~~~~~~~~~~spdG~~l~~~s~~~~~~~~~~~  501 (1045)
T 1k32_A          446 TDGYVMQAIHVYDMEGRK----IFAATTENSHDYAPAFDADSKNLYYLSYRSLDPSPDRV  501 (1045)
T ss_dssp             TCSCCEEEEEEEETTTTE----EEECSCSSSBEEEEEECTTSCEEEEEESCCCCCEECSS
T ss_pred             ccCCCCCeEEEEECCCCc----EEEeeCCCcccCCceEcCCCCEEEEEecccCCcCcchh
Confidence                   89999987532    22345566678899999999999888766 67778753

>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*

Probab=99.83  E-value=5.1e-19  Score=168.59  Aligned_cols=238  Identities=12%  Similarity=0.131  Sum_probs=160.8

Q ss_pred             cceeEEEEccCCCEEEEeeCCCcEEEEeecCCCceEEEEecCcccCeEEEEeeCCCCCCEEEEEeCCCeEEEEEcCC---
Q 022111           12 DTVHDVAMDFYGKRLATASSDSSIKIIGLSNSASQHLATLKGHRGPVWQVAWAHPKFGSILASCSYDGQVIIWKEGN---   88 (302)
Q Consensus        12 ~~v~~~~~s~~~~~l~s~~~d~~v~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~s~D~~i~iwd~~~---   88 (302)
                      ..|.+++|+|| +.++.+ .|+++++||+.++  + ...+..|...+.+++|+|+  |++|+++ .|+.|.+||+.+   
T Consensus        82 ~~v~~~~~spd-~~~~~~-~~~~i~~~d~~~~--~-~~~l~~~~~~~~~~~~Spd--G~~la~~-~~~~i~v~~~~~~~~  153 (706)
T 2z3z_A           82 FPSFRTLDAGR-GLVVLF-TQGGLVGFDMLAR--K-VTYLFDTNEETASLDFSPV--GDRVAYV-RNHNLYIARGGKLGE  153 (706)
T ss_dssp             CCCEEEEETTT-TEEEEE-ETTEEEEEETTTT--E-EEEEECCTTCCTTCEECTT--SSEEEEE-ETTEEEEEECBCTTS
T ss_pred             cCceeEEECCC-CeEEEE-ECCEEEEEECCCC--c-eEEccCCcccccCCcCCCC--CCEEEEE-ECCeEEEEecCcccc
Confidence            56999999999 666655 4699999998653  2 2344556777889999874  8888884 789999999976   


Q ss_pred             --CCceeEEEEecCCCCC--------------eeEEEecCCCCCcEEEEEe-----------------------------
Q 022111           89 --QNDWTQAHTFNDHKSS--------------VNSIAWAPHELGLSLACGS-----------------------------  123 (302)
Q Consensus        89 --~~~~~~~~~~~~h~~~--------------i~~l~~~pd~~~~~l~sg~-----------------------------  123 (302)
                        +..   ......+...              +.+++|+||  |..|++++                             
T Consensus       154 ~~g~~---~~~~~~~~~~~~~g~~~~~ee~~~~~~~~~SpD--g~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~  228 (706)
T 2z3z_A          154 GMSRA---IAVTIDGTETLVYGQAVHQREFGIEKGTFWSPK--GSCLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMA  228 (706)
T ss_dssp             CCCCC---EESCSCCBTTEEESSCCGGGCTTCCCSEEECTT--SSEEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBT
T ss_pred             cCCCc---EEeccCCCCCeEcccchhhhhcCCCceEEECCC--CCEEEEEEECCCCCceEEeeccCCCCCceEEeeCCCC
Confidence              432   2222222222              589999999  67888887                             


Q ss_pred             ----cCCcEEEEEecCCCCeeeeeecccCCCCeEEEEeCCCCCCCceeecccCCCceeEEEeeCCC-----cEEEEEEec
Q 022111          124 ----SDGNISVFTATADGGWDTTRIDQAHPVGVTSVSWAPAMAPGALVGLGLLDPVQKLASCGCDN-----TVKVWKMYN  194 (302)
Q Consensus       124 ----~d~~v~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~D~-----~v~iwd~~~  194 (302)
                          .+..|.+||+.... .........|...+.++.|+|++              +.|++++.++     .|++||+.+
T Consensus       229 g~~~~~~~l~~~d~~~~~-~~~~~~~~~~~~~~~~~~~spdg--------------~~l~~~~~~~~~~~~~v~~~d~~~  293 (706)
T 2z3z_A          229 GTPSHHVTVGIYHLATGK-TVYLQTGEPKEKFLTNLSWSPDE--------------NILYVAEVNRAQNECKVNAYDAET  293 (706)
T ss_dssp             TSCCCEEEEEEEETTTTE-EEECCCCSCTTCEEEEEEECTTS--------------SEEEEEEECTTSCEEEEEEEETTT
T ss_pred             CCCCCeeEEEEEECCCCc-eEeeccCCCCceeEeeEEEECCC--------------CEEEEEEeCCCCCeeEEEEEECCC
Confidence                34678889886432 11111112455678999999974              6788877765     899999877


Q ss_pred             C-ccccccccccccCCC---ceeEEEeeC--CCCCCccEEEEEecCCeEEEEEeccCCcceeeeeeccCCCcEEE-EEEc
Q 022111          195 G-IWKMDCFPALQMHSD---WVRSVAWAP--NLGLPKSTIASASQDGTVVIWTCAKEGEQWEGRVLKDFKTPVWS-VSWS  267 (302)
Q Consensus       195 ~-~~~~~~~~~~~~h~~---~v~~v~~~p--~~~~~~~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~~~~~v~~-~~~s  267 (302)
                      + ... . +.. ..+..   .+.+++|+|  |+    +++++++.|+.++||+++.....  ...+..+...+.+ ++|+
T Consensus       294 g~~~~-~-~~~-~~~~~~~~~~~~~~~sp~~dg----~~l~~~~~~g~~~l~~~~~~~~~--~~~l~~~~~~v~~~~~~s  364 (706)
T 2z3z_A          294 GRFVR-T-LFV-ETDKHYVEPLHPLTFLPGSNN----QFIWQSRRDGWNHLYLYDTTGRL--IRQVTKGEWEVTNFAGFD  364 (706)
T ss_dssp             CCEEE-E-EEE-EECSSCCCCCSCCEECTTCSS----EEEEEECTTSSCEEEEEETTSCE--EEECCCSSSCEEEEEEEC
T ss_pred             Cceee-E-EEE-ccCCCeECccCCceeecCCCC----EEEEEEccCCccEEEEEECCCCE--EEecCCCCeEEEeeeEEc
Confidence            6 211 1 111 12222   347889999  85    68999999999999998733221  1233445556776 7999


Q ss_pred             cCCCEEEEecCC-c---eEEeee
Q 022111          268 LTGNLLAVADAN-N---VTLWKE  286 (302)
Q Consensus       268 pdg~~la~~~~d-~---i~~w~~  286 (302)
                      |||+.|++++.+ +   ++||..
T Consensus       365 pdg~~l~~~~~~~~~~~~~l~~~  387 (706)
T 2z3z_A          365 PKGTRLYFESTEASPLERHFYCI  387 (706)
T ss_dssp             TTSSEEEEEESSSCTTCBEEEEE
T ss_pred             CCCCEEEEEecCCCCceEEEEEE
Confidence            999988766443 2   566654

>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1

Probab=99.83  E-value=8e-18  Score=148.10  Aligned_cols=257  Identities=10%  Similarity=0.081  Sum_probs=159.5

Q ss_pred             cceeEEEEccCCCEEEEeeCCCcEEEEeec-CCCceEEEEecCcccCeEEEEeeCCCCCC--EEEEEe------------
Q 022111           12 DTVHDVAMDFYGKRLATASSDSSIKIIGLS-NSASQHLATLKGHRGPVWQVAWAHPKFGS--ILASCS------------   76 (302)
Q Consensus        12 ~~v~~~~~s~~~~~l~s~~~d~~v~lw~~~-~~~~~~~~~~~~h~~~v~~v~~~~~~~~~--~l~s~s------------   76 (302)
                      ..+..++|+|++++|++++.+ .|++|++. .+....+.....+ +...+++|+++  |+  +++++.            
T Consensus        40 ~~~~~~a~spdg~~l~~~~~~-~v~~~~~~~~g~~~~~~~~~~~-g~~~~~~~spd--g~~l~~~~~~~~~~~~~~~~~~  115 (365)
T 1jof_A           40 EPISWMTFDHERKNIYGAAMK-KWSSFAVKSPTEIVHEASHPIG-GHPRANDADTN--TRAIFLLAAKQPPYAVYANPFY  115 (365)
T ss_dssp             CCCSEEEECTTSSEEEEEEBT-EEEEEEEEETTEEEEEEEEECC-SSGGGGCTTSC--CEEEEEEECSSTTCCEEEEEES
T ss_pred             CCCcEEEECCCCCEEEEEccc-eEEEEEECCCCCEEEeeEeecC-CCCccEEECCC--CCEEEEEEecCCcceeccceee
Confidence            357789999999999999888 99999986 4322112222111 23455788764  77  355553            


Q ss_pred             -CCCeEEEEEcCCCCce-eEEEEec-CCCCCeeEEEecCCCCCcEEEEEe-cCCcEEEEEecCCCCeee-eeecc-cCCC
Q 022111           77 -YDGQVIIWKEGNQNDW-TQAHTFN-DHKSSVNSIAWAPHELGLSLACGS-SDGNISVFTATADGGWDT-TRIDQ-AHPV  150 (302)
Q Consensus        77 -~D~~i~iwd~~~~~~~-~~~~~~~-~h~~~i~~l~~~pd~~~~~l~sg~-~d~~v~~~~~~~~~~~~~-~~~~~-~h~~  150 (302)
                       .++++.+|++...... ..+..+. .+...+.+++|+||  |++|++++ .++.|++|++...+.... ..+.. .|..
T Consensus       116 ~~~g~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~spd--G~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~~g~  193 (365)
T 1jof_A          116 KFAGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPT--ETYLYSADLTANKLWTHRKLASGEVELVGSVDAPDPGD  193 (365)
T ss_dssp             SSCCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECTT--SSEEEEEETTTTEEEEEEECTTSCEEEEEEEECSSTTC
T ss_pred             cCCceEEEEccCCCCcCcceEeeEEeCCCCcceEEEECCC--CCEEEEEcCCCCEEEEEEECCCCCEEEeeeEecCCCCC
Confidence             6899999998642221 1122221 24567899999998  66677665 467999999873222221 12211 1345


Q ss_pred             CeEEEEeCCCCCCCceeecccCCCceeEEEee-CCCcEEEEEEec--Ccccc--cccccc----ccCCC------ceeEE
Q 022111          151 GVTSVSWAPAMAPGALVGLGLLDPVQKLASCG-CDNTVKVWKMYN--GIWKM--DCFPAL----QMHSD------WVRSV  215 (302)
Q Consensus       151 ~v~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~-~D~~v~iwd~~~--~~~~~--~~~~~~----~~h~~------~v~~v  215 (302)
                      .+..++|+|++              ++|++++ .++.|.+|++..  +....  ..+..+    .+|..      .+.++
T Consensus       194 ~p~~~~~spdg--------------~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i  259 (365)
T 1jof_A          194 HPRWVAMHPTG--------------NYLYALMEAGNRICEYVIDPATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADV  259 (365)
T ss_dssp             CEEEEEECTTS--------------SEEEEEETTTTEEEEEEECTTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEE
T ss_pred             CCCEeEECCCC--------------CEEEEEECCCCeEEEEEEeCCCCcEEEccceEEcCCCCcCCcccccccccccccE
Confidence            67889999864              5666655 478999998863  32110  111112    23343      68899


Q ss_pred             E-eeCCCCCCccEEEEEec-CC-----eEEEEEeccCCccee-eeeeccCCCcEEEEEEcc---CCCEEEEecCC--ceE
Q 022111          216 A-WAPNLGLPKSTIASASQ-DG-----TVVIWTCAKEGEQWE-GRVLKDFKTPVWSVSWSL---TGNLLAVADAN--NVT  282 (302)
Q Consensus       216 ~-~~p~~~~~~~~l~s~s~-D~-----~i~iwd~~~~~~~~~-~~~~~~~~~~v~~~~~sp---dg~~la~~~~d--~i~  282 (302)
                      + |+||+    ++|++++. +.     +|++|++...+.... ......+...+..++|+|   ||++|++++.+  .|.
T Consensus       260 ~~~spdG----~~l~v~~~~~~~~~~~~i~v~~~~~~g~~~~~~~~~~~~~~~~~~~a~sp~~~dg~~l~v~~~~~~~v~  335 (365)
T 1jof_A          260 CALTFSG----KYMFASSRANKFELQGYIAGFKLRDCGSIEKQLFLSPTPTSGGHSNAVSPCPWSDEWMAITDDQEGWLE  335 (365)
T ss_dssp             EEECTTS----SEEEEEEEESSTTSCCEEEEEEECTTSCEEEEEEEEECSSCCTTCCCEEECTTCTTEEEEECSSSCEEE
T ss_pred             EEECCCC----CEEEEECCCCCCCCCCeEEEEEECCCCCEEEeeeeeecCCCCcccceecCCCcCCCEEEEEEcCCCeEE
Confidence            9 99996    56655543 33     899999963222111 001222334466789999   89999999764  699


Q ss_pred             EeeecCCceEE
Q 022111          283 LWKEAVDGEWQ  293 (302)
Q Consensus       283 ~w~~~~~~~~~  293 (302)
                      +|+.... ...
T Consensus       336 v~~~~~~-~l~  345 (365)
T 1jof_A          336 IYRWKDE-FLH  345 (365)
T ss_dssp             EEEEETT-EEE
T ss_pred             EEEEchh-hCc
Confidence            9998644 443

>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24

Probab=99.83  E-value=9.4e-19  Score=167.02  Aligned_cols=252  Identities=10%  Similarity=0.101  Sum_probs=158.4

Q ss_pred             cccccc---ceeEEEEccCCCEEEEeeCC---------CcEEEEeecCCCceEEEEecCcccCeEEEEeeCCCCCCEEEE
Q 022111            7 ETGHED---TVHDVAMDFYGKRLATASSD---------SSIKIIGLSNSASQHLATLKGHRGPVWQVAWAHPKFGSILAS   74 (302)
Q Consensus         7 ~~~h~~---~v~~~~~s~~~~~l~s~~~d---------~~v~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s   74 (302)
                      ..+|..   .|.+++|||||++||+++.+         +.+++||+..+....+....+|...+..++|+|+  |++||+
T Consensus        53 ~~~~~~~~~~v~~~~~SpDg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~~~~SPd--G~~la~  130 (723)
T 1xfd_A           53 IEGKKIESLRAIRYEISPDREYALFSYNVEPIYQHSYTGYYVLSKIPHGDPQSLDPPEVSNAKLQYAGWGPK--GQQLIF  130 (723)
T ss_dssp             ECTTTTTTTTCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEEESSSCCCEECCCTTCCSCCCSBCCBCSS--TTCEEE
T ss_pred             eccccccccccceEEECCCCCEEEEEecCccceeecceeeEEEEECCCCceEeccCCccccccccccEECCC--CCEEEE
Confidence            344544   48999999999999999875         6788999876543333333456666889999875  889998


Q ss_pred             EeCCCeEEEEEcCCCCceeEEEEecCCCC------------------CeeEEEecCCCCCcEEEEEecCC----------
Q 022111           75 CSYDGQVIIWKEGNQNDWTQAHTFNDHKS------------------SVNSIAWAPHELGLSLACGSSDG----------  126 (302)
Q Consensus        75 ~s~D~~i~iwd~~~~~~~~~~~~~~~h~~------------------~i~~l~~~pd~~~~~l~sg~~d~----------  126 (302)
                      ++. +.|.+||+.++..   ......+..                  .+.+++|+||  |..|++++.|+          
T Consensus       131 ~~~-~~i~~~~~~~g~~---~~~~~~~~~~~~~~g~~~~v~~ee~~~~~~~~~~SpD--g~~la~~~~~~~~~~~~~~~~  204 (723)
T 1xfd_A          131 IFE-NNIYYCAHVGKQA---IRVVSTGKEGVIYNGLSDWLYEEEILKTHIAHWWSPD--GTRLAYAAINDSRVPIMELPT  204 (723)
T ss_dssp             EET-TEEEEESSSSSCC---EEEECCCBTTTEEEEECCHHHHHTTSSSSEEEEECTT--SSEEEEEEEECTTSCEEEECC
T ss_pred             EEC-CeEEEEECCCCce---EEEecCCCCCceECcccceeEEEEeccCcceEEECCC--CCEEEEEEECCCccceEEeec
Confidence            886 7999999876532   222223332                  2378999999  67888887553          


Q ss_pred             ------------------------cEEEEEecCCCCeeeeeecc-----cCCCCeEEEEeCCCCCCCceeecccCCCcee
Q 022111          127 ------------------------NISVFTATADGGWDTTRIDQ-----AHPVGVTSVSWAPAMAPGALVGLGLLDPVQK  177 (302)
Q Consensus       127 ------------------------~v~~~~~~~~~~~~~~~~~~-----~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~  177 (302)
                                              .|.+||+......  ..+..     .+...+..+.|+|++              +.
T Consensus       205 ~~~~~~~~~~~~~~~~~G~~~~~~~l~~~d~~~~~~~--~~l~~~~~~~~~~~~~~~~~~SpDg--------------~~  268 (723)
T 1xfd_A          205 YTGSIYPTVKPYHYPKAGSENPSISLHVIGLNGPTHD--LEMMPPDDPRMREYYITMVKWATST--------------KV  268 (723)
T ss_dssp             CSSSSSCCCEEEECCBTTSCCCEEEEEEEESSSSCCC--EECCCCCCGGGSSEEEEEEEESSSS--------------EE
T ss_pred             cCCcCCCcceeccCCCCCCCCCeeEEEEEECCCCcee--EEeeCCccCCCccceeEEEEEeCCC--------------eE
Confidence                                    6788887643211  12211     124567889999864              66


Q ss_pred             EEEeeC----CCcEEEEEEecCccccccccccc-cCCCcee----EEEeeCCCCCCccEEEE--EecCC----e--EEEE
Q 022111          178 LASCGC----DNTVKVWKMYNGIWKMDCFPALQ-MHSDWVR----SVAWAPNLGLPKSTIAS--ASQDG----T--VVIW  240 (302)
Q Consensus       178 l~s~~~----D~~v~iwd~~~~~~~~~~~~~~~-~h~~~v~----~v~~~p~~~~~~~~l~s--~s~D~----~--i~iw  240 (302)
                      |++.+.    +..|++||+.++..    ...+. .|..++.    +++|+||+    +.|+.  +..|+    .  |.+|
T Consensus       269 l~~~~~~~~~~~~i~~~d~~~g~~----~~~~~~~~~~~~~~~~~~~~~spdg----~~l~~~~~~~~~~~~~~~~l~~~  340 (723)
T 1xfd_A          269 AVTWLNRAQNVSILTLCDATTGVC----TKKHEDESEAWLHRQNEEPVFSKDG----RKFFFIRAIPQGGRGKFYHITVS  340 (723)
T ss_dssp             EEEEEETTSCEEEEEEEETTTCCE----EEEEEEECSSCCCCCCCCCEECTTS----CSEEEEEEECCSSSSCEEEEEEE
T ss_pred             EEEEEcCCCCeEEEEEEeCCCCcc----eEEEEeccCCEEeccCCCceEcCCC----CeEEEEEecccCCCcceeEEEEE
Confidence            665543    35799999877631    12222 2445554    78999996    44543  55677    4  5555


Q ss_pred             EeccCCcceeeeeeccCCCcEEE-EEEccCCCEEEEecC----CceEEeeecCCc
Q 022111          241 TCAKEGEQWEGRVLKDFKTPVWS-VSWSLTGNLLAVADA----NNVTLWKEAVDG  290 (302)
Q Consensus       241 d~~~~~~~~~~~~~~~~~~~v~~-~~~spdg~~la~~~~----d~i~~w~~~~~~  290 (302)
                      |+...........+......+.. ++|||||+.|+..+.    ..++||+...++
T Consensus       341 d~~~~~~~~~~~~l~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~~~~~  395 (723)
T 1xfd_A          341 SSQPNSSNDNIQSITSGDWDVTKILAYDEKGNKIYFLSTEDLPRRRQLYSANTVG  395 (723)
T ss_dssp             CSSCCSSSCCCCBSCCSSSCEEEEEEEETTTTEEEEEESSSCTTCCEEEEECSST
T ss_pred             eccCCCCccceeEeecCCeEEEeeeEEcCCCCEEEEEEcCCCCcceEEEEEeCCC
Confidence            52122110001122222334544 699999999876543    248999986544

>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}

Probab=99.83  E-value=8.7e-18  Score=145.12  Aligned_cols=245  Identities=9%  Similarity=0.040  Sum_probs=155.4

Q ss_pred             EEEccCCC-EEEEeeCCCcEEEEeecCCCceEEEEecCcccCeEEEEeeCCCCCCEEEEEe-CCCeEEEEEcCCCCceeE
Q 022111           17 VAMDFYGK-RLATASSDSSIKIIGLSNSASQHLATLKGHRGPVWQVAWAHPKFGSILASCS-YDGQVIIWKEGNQNDWTQ   94 (302)
Q Consensus        17 ~~~s~~~~-~l~s~~~d~~v~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~s-~D~~i~iwd~~~~~~~~~   94 (302)
                      +.|+.+++ .+++++.+++|++||.....  ....+..+...+ .++|+++  +++|++++ .++.|.+||+.+...  .
T Consensus         3 ~~~~~~~~~~~v~~~~~~~v~~~d~~~~~--~~~~~~~~~~~~-~~~~s~d--g~~l~~~~~~~~~i~~~d~~~~~~--~   75 (331)
T 3u4y_A            3 AMFQTTSNFGIVVEQHLRRISFFSTDTLE--ILNQITLGYDFV-DTAITSD--CSNVVVTSDFCQTLVQIETQLEPP--K   75 (331)
T ss_dssp             ----CCCCEEEEEEGGGTEEEEEETTTCC--EEEEEECCCCEE-EEEECSS--SCEEEEEESTTCEEEEEECSSSSC--E
T ss_pred             eeEcCCCCEEEEEecCCCeEEEEeCcccc--eeeeEEccCCcc-eEEEcCC--CCEEEEEeCCCCeEEEEECCCCce--e
Confidence            34666555 47788889999999986543  334444445556 8999864  67555555 489999999977542  1


Q ss_pred             EEEecCCCCCeeEEEecCCCCCcEEEEEecCC---cEEEEEecCCCCeeeeeecccCCCCeEEEEeCCCCCCCceeeccc
Q 022111           95 AHTFNDHKSSVNSIAWAPHELGLSLACGSSDG---NISVFTATADGGWDTTRIDQAHPVGVTSVSWAPAMAPGALVGLGL  171 (302)
Q Consensus        95 ~~~~~~h~~~i~~l~~~pd~~~~~l~sg~~d~---~v~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~  171 (302)
                      ...+..+..+..+++|+|+  +.+++++..++   .|.+||......  ...+  .+......++|+|++          
T Consensus        76 ~~~~~~~~~~~~~~~~s~d--g~~l~~~~~~~~~~~i~v~d~~~~~~--~~~~--~~~~~~~~~~~spdg----------  139 (331)
T 3u4y_A           76 VVAIQEGQSSMADVDITPD--DQFAVTVTGLNHPFNMQSYSFLKNKF--ISTI--PIPYDAVGIAISPNG----------  139 (331)
T ss_dssp             EEEEEECSSCCCCEEECTT--SSEEEECCCSSSSCEEEEEETTTTEE--EEEE--ECCTTEEEEEECTTS----------
T ss_pred             EEecccCCCCccceEECCC--CCEEEEecCCCCcccEEEEECCCCCe--EEEE--ECCCCccceEECCCC----------
Confidence            4455556666666999998  66777555553   899999864422  1222  223446889999874          


Q ss_pred             CCCceeEEEeeCCCc-EEEEEEecCccccccccccccCCCceeEEEeeCCCCCCccEEEEEecCCeEEEEEeccCCccee
Q 022111          172 LDPVQKLASCGCDNT-VKVWKMYNGIWKMDCFPALQMHSDWVRSVAWAPNLGLPKSTIASASQDGTVVIWTCAKEGEQWE  250 (302)
Q Consensus       172 ~~~~~~l~s~~~D~~-v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~l~s~s~D~~i~iwd~~~~~~~~~  250 (302)
                         ...++++..++. |.+|++...............+.....+++|+|++   ...++++..++.|++||+........
T Consensus       140 ---~~l~~~~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~spdg---~~l~v~~~~~~~v~v~d~~~~~~~~~  213 (331)
T 3u4y_A          140 ---NGLILIDRSSANTVRRFKIDADGVLFDTGQEFISGGTRPFNITFTPDG---NFAFVANLIGNSIGILETQNPENITL  213 (331)
T ss_dssp             ---SCEEEEEETTTTEEEEEEECTTCCEEEEEEEEECSSSSEEEEEECTTS---SEEEEEETTTTEEEEEECSSTTSCEE
T ss_pred             ---CEEEEEecCCCceEEEEEECCCCcEeecCCccccCCCCccceEECCCC---CEEEEEeCCCCeEEEEECCCCcccce
Confidence               134555666688 99999875321111101111234457899999996   13456666799999999875432000


Q ss_pred             eeeeccCCCcEEEEEEccCCCEEEEecC-C-ceEEeeecCCceE
Q 022111          251 GRVLKDFKTPVWSVSWSLTGNLLAVADA-N-NVTLWKEAVDGEW  292 (302)
Q Consensus       251 ~~~~~~~~~~v~~~~~spdg~~la~~~~-d-~i~~w~~~~~~~~  292 (302)
                      .... .....+..++|+|||++|+++.. + .|.+|+... ++.
T Consensus       214 ~~~~-~~~~~~~~~~~spdg~~l~v~~~~~~~i~~~d~~~-~~~  255 (331)
T 3u4y_A          214 LNAV-GTNNLPGTIVVSRDGSTVYVLTESTVDVFNFNQLS-GTL  255 (331)
T ss_dssp             EEEE-ECSSCCCCEEECTTSSEEEEECSSEEEEEEEETTT-TEE
T ss_pred             eeec-cCCCCCceEEECCCCCEEEEEEcCCCEEEEEECCC-Cce
Confidence            1111 22356778999999998877654 3 699999754 443

>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}

Probab=99.82  E-value=3.5e-17  Score=142.57  Aligned_cols=240  Identities=13%  Similarity=0.150  Sum_probs=152.2

Q ss_pred             CCCcEEEEeecCCCceEE-EEecCcccCeEEEEeeCCCCCCEEEEEeC---CCeEEEEEcCCCCceeEEEEecCCCCCee
Q 022111           31 SDSSIKIIGLSNSASQHL-ATLKGHRGPVWQVAWAHPKFGSILASCSY---DGQVIIWKEGNQNDWTQAHTFNDHKSSVN  106 (302)
Q Consensus        31 ~d~~v~lw~~~~~~~~~~-~~~~~h~~~v~~v~~~~~~~~~~l~s~s~---D~~i~iwd~~~~~~~~~~~~~~~h~~~i~  106 (302)
                      .++.|++|.++...++.. .....+......++|+++  |+ |++++.   ++.|.+|++..+ ....+..+..+...+.
T Consensus        14 ~~~~i~v~~~d~~tg~~~~~~~~~~~~~p~~~a~spd--g~-l~~~~~~~~~~~v~~~~~~~g-~~~~~~~~~~~~~~p~   89 (347)
T 3hfq_A           14 TSQGIYQGTLDTTAKTLTNDGLLAATQNPTYLALSAK--DC-LYSVDKEDDEGGIAAWQIDGQ-TAHKLNTVVAPGTPPA   89 (347)
T ss_dssp             SCCEEEEEEEETTTTEEEEEEEEEECSCCCCEEECTT--CE-EEEEEEETTEEEEEEEEEETT-EEEEEEEEEEESCCCS
T ss_pred             CCCCEEEEEEcCCCCeEEEeeeeeccCCcceEEEccC--Ce-EEEEEecCCCceEEEEEecCC-cEEEeeeeecCCCCCE
Confidence            467799998875443321 123345566778999874  67 444443   689999999553 2334444445677889


Q ss_pred             EEEecCCCCCcEEEEEe-cCCcEEEEEecCCCCeee-eeecc-c-------CCCCeEEEEeCCCCCCCceeecccCCCce
Q 022111          107 SIAWAPHELGLSLACGS-SDGNISVFTATADGGWDT-TRIDQ-A-------HPVGVTSVSWAPAMAPGALVGLGLLDPVQ  176 (302)
Q Consensus       107 ~l~~~pd~~~~~l~sg~-~d~~v~~~~~~~~~~~~~-~~~~~-~-------h~~~v~~~~~~~~~~~~~~~~~~~~~~~~  176 (302)
                      .++|+||  +.+|++++ .++.+.+|++...+.... ..+.. +       +...+.+++|+|++              +
T Consensus        90 ~~a~spd--g~~l~~~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~spdg--------------~  153 (347)
T 3hfq_A           90 YVAVDEA--RQLVYSANYHKGTAEVMKIAADGALTLTDTVQHSGHGPRPEQDGSHIHYTDLTPDN--------------R  153 (347)
T ss_dssp             EEEEETT--TTEEEEEETTTTEEEEEEECTTSCEEEEEEEECCCCCSSTTCSSCCEEEEEECTTS--------------C
T ss_pred             EEEECCC--CCEEEEEeCCCCEEEEEEeCCCCCeeecceeecCCCCCCccccCCCceEEEECCCC--------------c
Confidence            9999998  66777777 778999999965443322 11110 0       11236778888864              5


Q ss_pred             eEEEeeCCCcEEEEEEe-cCccccccccccccC-CCceeEEEeeCCCCCCcc-EEEEEecCCeEEEEEeccCCccee-ee
Q 022111          177 KLASCGCDNTVKVWKMY-NGIWKMDCFPALQMH-SDWVRSVAWAPNLGLPKS-TIASASQDGTVVIWTCAKEGEQWE-GR  252 (302)
Q Consensus       177 ~l~s~~~D~~v~iwd~~-~~~~~~~~~~~~~~h-~~~v~~v~~~p~~~~~~~-~l~s~s~D~~i~iwd~~~~~~~~~-~~  252 (302)
                      .+++...++.|++||+. ++..  .....+..+ ...+..++|+||+    + .+++...++.|++|+++....... ..
T Consensus       154 l~v~~~~~~~v~~~~~~~~g~~--~~~~~~~~~~g~~p~~~~~spdg----~~l~v~~~~~~~v~v~~~~~~~g~~~~~~  227 (347)
T 3hfq_A          154 LAVIDLGSDKVYVYNVSDAGQL--SEQSVLTMEAGFGPRHLVFSPDG----QYAFLAGELSSQIASLKYDTQTGAFTQLG  227 (347)
T ss_dssp             EEEEETTTTEEEEEEECTTSCE--EEEEEEECCTTCCEEEEEECTTS----SEEEEEETTTTEEEEEEEETTTTEEEEEE
T ss_pred             EEEEeCCCCEEEEEEECCCCcE--EEeeeEEcCCCCCCceEEECCCC----CEEEEEeCCCCEEEEEEecCCCCceEEee
Confidence            67777778899999998 3321  111122222 2357889999996    4 455567789999999875221111 11


Q ss_pred             eeccCC------CcEEEEEEccCCCEEEEec-CC-ceEEeeecCCceEEEee
Q 022111          253 VLKDFK------TPVWSVSWSLTGNLLAVAD-AN-NVTLWKEAVDGEWQQVS  296 (302)
Q Consensus       253 ~~~~~~------~~v~~~~~spdg~~la~~~-~d-~i~~w~~~~~~~~~~~~  296 (302)
                      ......      ..+..++|+|||++|+++. .+ .|.+|+...+|.+....
T Consensus       228 ~~~~~~~~~~~~~~~~~i~~spdG~~l~v~~~~~~~v~v~~~~~~g~~~~~~  279 (347)
T 3hfq_A          228 IVKTIPADYTAHNGAAAIRLSHDGHFLYVSNRGYNTLAVFAVTADGHLTLIQ  279 (347)
T ss_dssp             EEESSCTTCCSCCEEEEEEECTTSCEEEEEEETTTEEEEEEECGGGCEEEEE
T ss_pred             eeeecCCCCCCCCcceeEEECCCCCEEEEEeCCCCEEEEEEECCCCcEEEeE
Confidence            111111      3488999999999885543 34 79999987666554443

>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*

Probab=99.82  E-value=4.9e-18  Score=147.35  Aligned_cols=243  Identities=9%  Similarity=0.053  Sum_probs=154.8

Q ss_pred             EEEEccCCCEEEEeeCCCcEEEEeecCCCceEEEEecCcc-cCeEEEEeeCCCCCCE-EEEEeCCCeEEEEEcCCCCcee
Q 022111           16 DVAMDFYGKRLATASSDSSIKIIGLSNSASQHLATLKGHR-GPVWQVAWAHPKFGSI-LASCSYDGQVIIWKEGNQNDWT   93 (302)
Q Consensus        16 ~~~~s~~~~~l~s~~~d~~v~lw~~~~~~~~~~~~~~~h~-~~v~~v~~~~~~~~~~-l~s~s~D~~i~iwd~~~~~~~~   93 (302)
                      .++++++++++++++.+++|++||..+.  +.+..+..+. ..+..++|+++  +++ ++++..++.|.+||+.++.   
T Consensus         4 g~~~~~~~~~~v~~~~~~~v~~~d~~~~--~~~~~~~~~~~~~~~~~~~s~d--g~~~~v~~~~~~~i~~~d~~t~~---   76 (349)
T 1jmx_B            4 GPALKAGHEYMIVTNYPNNLHVVDVASD--TVYKSCVMPDKFGPGTAMMAPD--NRTAYVLNNHYGDIYGIDLDTCK---   76 (349)
T ss_dssp             CCCCCTTCEEEEEEETTTEEEEEETTTT--EEEEEEECSSCCSSCEEEECTT--SSEEEEEETTTTEEEEEETTTTE---
T ss_pred             cccccCCCEEEEEeCCCCeEEEEECCCC--cEEEEEecCCCCCCceeEECCC--CCEEEEEeCCCCcEEEEeCCCCc---
Confidence            4567888899999999999999998653  4455554333 24678999764  664 5566678999999987653   


Q ss_pred             EEEEecCCC------CCeeEEEecCCCCCcEEEEEecC------------CcEEEEEecCCCCeeeeeecccCCCCeEEE
Q 022111           94 QAHTFNDHK------SSVNSIAWAPHELGLSLACGSSD------------GNISVFTATADGGWDTTRIDQAHPVGVTSV  155 (302)
Q Consensus        94 ~~~~~~~h~------~~i~~l~~~pd~~~~~l~sg~~d------------~~v~~~~~~~~~~~~~~~~~~~h~~~v~~~  155 (302)
                      ....+....      ..+..++|+||  +.+|++++.+            +.|.+||+.+.......... .+...+.++
T Consensus        77 ~~~~~~~~~~~~~~~~~~~~~~~spd--g~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~-~~~~~~~~~  153 (349)
T 1jmx_B           77 NTFHANLSSVPGEVGRSMYSFAISPD--GKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTF-PMPRQVYLM  153 (349)
T ss_dssp             EEEEEESCCSTTEEEECSSCEEECTT--SSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEE-ECCSSCCCE
T ss_pred             EEEEEEcccccccccccccceEECCC--CCEEEEEcccccccccccccCCCeEEEEECCCccccceeeec-cCCCcccce
Confidence            333333222      23789999998  6678887765            89999998752211111111 233457778


Q ss_pred             EeCCCCCCCceeecccCCCceeEEEeeCCCcEEEEEEecCccccccc-cc------------------------------
Q 022111          156 SWAPAMAPGALVGLGLLDPVQKLASCGCDNTVKVWKMYNGIWKMDCF-PA------------------------------  204 (302)
Q Consensus       156 ~~~~~~~~~~~~~~~~~~~~~~l~s~~~D~~v~iwd~~~~~~~~~~~-~~------------------------------  204 (302)
                      +|+|++              + ++.++.  .|++||+.++....... ..                              
T Consensus       154 ~~s~dg--------------~-l~~~~~--~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  216 (349)
T 1jmx_B          154 RAADDG--------------S-LYVAGP--DIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTI  216 (349)
T ss_dssp             EECTTS--------------C-EEEESS--SEEEECTTTCCEEEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEE
T ss_pred             eECCCC--------------c-EEEccC--cEEEEeCCCCceeccccccccCCccccCccceeeecCCCcceeEEeeeee
Confidence            888864              4 444433  38889876543110000 00                              


Q ss_pred             ---------------------------------cccCCCceeEEEeeC-CCCCCccEEEEEecCCeEEEEEeccCCccee
Q 022111          205 ---------------------------------LQMHSDWVRSVAWAP-NLGLPKSTIASASQDGTVVIWTCAKEGEQWE  250 (302)
Q Consensus       205 ---------------------------------~~~h~~~v~~v~~~p-~~~~~~~~l~s~s~D~~i~iwd~~~~~~~~~  250 (302)
                                                       +..+...+.+++|+| ++    +.++++  ++.|.+||+.+...  .
T Consensus       217 ~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~dg----~~l~~~--~~~v~~~d~~~~~~--~  288 (349)
T 1jmx_B          217 ARFKDDKQDPATADLLYGYLSVDLKTGKTHTQEFADLTELYFTGLRSPKDP----NQIYGV--LNRLAKYDLKQRKL--I  288 (349)
T ss_dssp             EEC-------CCCEEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECSSCT----TEEEEE--ESEEEEEETTTTEE--E
T ss_pred             eecCCCcCCccccccceeEEEEeccCCcEEecccccCCCcceeeEecCCCC----CEEEEE--cCeEEEEECccCeE--E
Confidence                                             000112456778888 75    567666  88999999875321  1


Q ss_pred             eeeeccCCCcEEEEEEccCCCEEEEecCC-ceEEeeecCCceEEEe
Q 022111          251 GRVLKDFKTPVWSVSWSLTGNLLAVADAN-NVTLWKEAVDGEWQQV  295 (302)
Q Consensus       251 ~~~~~~~~~~v~~~~~spdg~~la~~~~d-~i~~w~~~~~~~~~~~  295 (302)
                      ..+  .....+.+++|+|||++|++++.+ .|.+|+..........
T Consensus       289 ~~~--~~~~~~~~~~~s~dg~~l~~~~~~~~v~v~d~~~~~~~~~~  332 (349)
T 1jmx_B          289 KAA--NLDHTYYCVAFDKKGDKLYLGGTFNDLAVFNPDTLEKVKNI  332 (349)
T ss_dssp             EEE--ECSSCCCEEEECSSSSCEEEESBSSEEEEEETTTTEEEEEE
T ss_pred             EEE--cCCCCccceEECCCCCEEEEecCCCeEEEEeccccceeeee
Confidence            111  123457789999999988887666 7999998654444443

>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*

Probab=99.82  E-value=2.4e-17  Score=143.31  Aligned_cols=245  Identities=8%  Similarity=-0.016  Sum_probs=159.7

Q ss_pred             cccceeEEEEccCCCEEEEeeC-------CCcEEEEeecCCCceEEEEecCcccCeEEEEeeCCCCCC-EEEEEeCCCeE
Q 022111           10 HEDTVHDVAMDFYGKRLATASS-------DSSIKIIGLSNSASQHLATLKGHRGPVWQVAWAHPKFGS-ILASCSYDGQV   81 (302)
Q Consensus        10 h~~~v~~~~~s~~~~~l~s~~~-------d~~v~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~-~l~s~s~D~~i   81 (302)
                      ....+..++|+++++++++++.       ++.|.+||....  +.+..+.. ...+..++|+++  ++ ++++...++.|
T Consensus        39 ~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~v~~~d~~~~--~~~~~~~~-~~~~~~~~~s~d--g~~l~v~~~~~~~v  113 (353)
T 3vgz_A           39 VGKGAYEMAYSQQENALWLATSQSRKLDKGGVVYRLDPVTL--EVTQAIHN-DLKPFGATINNT--TQTLWFGNTVNSAV  113 (353)
T ss_dssp             EESSEEEEEEETTTTEEEEEECCCTTTEESEEEEEECTTTC--CEEEEEEE-SSCCCSEEEETT--TTEEEEEETTTTEE
T ss_pred             hccCccceEECCCCCEEEEEcCCCcCCCCCccEEEEcCCCC--eEEEEEec-CCCcceEEECCC--CCEEEEEecCCCEE
Confidence            3456788999999998888774       568999998653  33444432 334677889864  66 55666678999


Q ss_pred             EEEEcCCCCceeEEEEecCCCC---------CeeEEEecCCCCCcEEEEEe--cCCcEEEEEecCCCCeeeeeecccCCC
Q 022111           82 IIWKEGNQNDWTQAHTFNDHKS---------SVNSIAWAPHELGLSLACGS--SDGNISVFTATADGGWDTTRIDQAHPV  150 (302)
Q Consensus        82 ~iwd~~~~~~~~~~~~~~~h~~---------~i~~l~~~pd~~~~~l~sg~--~d~~v~~~~~~~~~~~~~~~~~~~h~~  150 (302)
                      .+||..++.   ....+..+..         .+.+++|+|+  +..++.++  .++.|.+||..+...  ...+. .+..
T Consensus       114 ~~~d~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~s~d--g~~l~~~~~~~~~~i~~~d~~~~~~--~~~~~-~~~~  185 (353)
T 3vgz_A          114 TAIDAKTGE---VKGRLVLDDRKRTEEVRPLQPRELVADDA--TNTVYISGIGKESVIWVVDGGNIKL--KTAIQ-NTGK  185 (353)
T ss_dssp             EEEETTTCC---EEEEEESCCCCCCSSCCCCEEEEEEEETT--TTEEEEEEESSSCEEEEEETTTTEE--EEEEC-CCCT
T ss_pred             EEEeCCCCe---eEEEEecCCCccccccCCCCCceEEECCC--CCEEEEEecCCCceEEEEcCCCCce--EEEec-CCCC
Confidence            999997754   3344443332         2688999998  44555554  478899999864321  12222 2333


Q ss_pred             CeEEEEeCCCCCCCceeecccCCCceeEEEeeCCCcEEEEEEecCccccccccccccCCCceeEEEeeCCCCCCccEEEE
Q 022111          151 GVTSVSWAPAMAPGALVGLGLLDPVQKLASCGCDNTVKVWKMYNGIWKMDCFPALQMHSDWVRSVAWAPNLGLPKSTIAS  230 (302)
Q Consensus       151 ~v~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~D~~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~l~s  230 (302)
                      .+..+.|+|++              +.|+.++.++.|.+||+.++...........++...+.+++|+|++   ...+++
T Consensus       186 ~~~~~~~s~dg--------------~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg---~~l~~~  248 (353)
T 3vgz_A          186 MSTGLALDSEG--------------KRLYTTNADGELITIDTADNKILSRKKLLDDGKEHFFINISLDTAR---QRAFIT  248 (353)
T ss_dssp             TCCCCEEETTT--------------TEEEEECTTSEEEEEETTTTEEEEEEECCCSSSCCCEEEEEEETTT---TEEEEE
T ss_pred             ccceEEECCCC--------------CEEEEEcCCCeEEEEECCCCeEEEEEEcCCCCCCcccceEEECCCC---CEEEEE
Confidence            46677888763              6788888899999999877632111111112356678899999996   234445


Q ss_pred             EecCCeEEEEEeccCCcceeeeeeccCCCcEEEEEEccCCCEEEEecC-C-ceEEeeecCC
Q 022111          231 ASQDGTVVIWTCAKEGEQWEGRVLKDFKTPVWSVSWSLTGNLLAVADA-N-NVTLWKEAVD  289 (302)
Q Consensus       231 ~s~D~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~la~~~~-d-~i~~w~~~~~  289 (302)
                      ...++.|.+||.......  ..+..  .. ...++|+|+|+++.+++. + .|.+|+....
T Consensus       249 ~~~~~~v~~~d~~~~~~~--~~~~~--~~-~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~  304 (353)
T 3vgz_A          249 DSKAAEVLVVDTRNGNIL--AKVAA--PE-SLAVLFNPARNEAYVTHRQAGKVSVIDAKSY  304 (353)
T ss_dssp             ESSSSEEEEEETTTCCEE--EEEEC--SS-CCCEEEETTTTEEEEEETTTTEEEEEETTTT
T ss_pred             eCCCCEEEEEECCCCcEE--EEEEc--CC-CceEEECCCCCEEEEEECCCCeEEEEECCCC
Confidence            555699999998754321  11111  12 256999999997666653 4 7999997643

>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*

Probab=99.81  E-value=1e-17  Score=144.43  Aligned_cols=240  Identities=15%  Similarity=0.150  Sum_probs=154.3

Q ss_pred             ceeEEEEccCCCEE-EEeeCCCcEEEEeecCCCceEEEEec-C----cccCeEEEEeeCCCCCCEEEEEe----------
Q 022111           13 TVHDVAMDFYGKRL-ATASSDSSIKIIGLSNSASQHLATLK-G----HRGPVWQVAWAHPKFGSILASCS----------   76 (302)
Q Consensus        13 ~v~~~~~s~~~~~l-~s~~~d~~v~lw~~~~~~~~~~~~~~-~----h~~~v~~v~~~~~~~~~~l~s~s----------   76 (302)
                      .+..++|+|+++++ ++++.++.|.+||+....  .+..+. +    |...+..++|+++  +++|++++          
T Consensus        35 ~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~--~~~~~~~~~~~~~~~~~~~~~~s~d--g~~l~~~~~~~~~~~~~~  110 (337)
T 1pby_B           35 TPMVPMVAPGGRIAYATVNKSESLVKIDLVTGE--TLGRIDLSTPEERVKSLFGAALSPD--GKTLAIYESPVRLELTHF  110 (337)
T ss_dssp             CCCCEEECTTSSEEEEEETTTTEEEEEETTTCC--EEEEEECCBTTEEEECTTCEEECTT--SSEEEEEEEEEEECSSCE
T ss_pred             CccceEEcCCCCEEEEEeCCCCeEEEEECCCCC--eEeeEEcCCcccccccccceEECCC--CCEEEEEecccccccccc
Confidence            47789999999765 455567899999986543  333332 1    2335678999864  77887775          


Q ss_pred             --CCCeEEEEEcCCCCceeEEEEecCCCCCeeEEEecCCCCCcEEEEEecCCcEEEEEecCCCCeeeeeecccC-CCCeE
Q 022111           77 --YDGQVIIWKEGNQNDWTQAHTFNDHKSSVNSIAWAPHELGLSLACGSSDGNISVFTATADGGWDTTRIDQAH-PVGVT  153 (302)
Q Consensus        77 --~D~~i~iwd~~~~~~~~~~~~~~~h~~~i~~l~~~pd~~~~~l~sg~~d~~v~~~~~~~~~~~~~~~~~~~h-~~~v~  153 (302)
                        .++.|.+||+.+..   ....+.. ...+.+++|+|+  +.+|+++  ++.|.+||......  ...+...+ ...  
T Consensus       111 ~~~~~~i~v~d~~~~~---~~~~~~~-~~~~~~~~~s~d--g~~l~~~--~~~i~~~d~~~~~~--~~~~~~~~~~~~--  178 (337)
T 1pby_B          111 EVQPTRVALYDAETLS---RRKAFEA-PRQITMLAWARD--GSKLYGL--GRDLHVMDPEAGTL--VEDKPIQSWEAE--  178 (337)
T ss_dssp             EECCCEEEEEETTTTE---EEEEEEC-CSSCCCEEECTT--SSCEEEE--SSSEEEEETTTTEE--EEEECSTTTTTT--
T ss_pred             cccCceEEEEECCCCc---EEEEEeC-CCCcceeEECCC--CCEEEEe--CCeEEEEECCCCcE--eeeeeccccCCC--
Confidence              57999999987642   3344443 456788999998  5566666  68999999864321  12222111 122  


Q ss_pred             EEEeCCCCCCCceeecccCCCceeEEEeeCCC-----------------------cEEEEEEecCccccccccccccCCC
Q 022111          154 SVSWAPAMAPGALVGLGLLDPVQKLASCGCDN-----------------------TVKVWKMYNGIWKMDCFPALQMHSD  210 (302)
Q Consensus       154 ~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~D~-----------------------~v~iwd~~~~~~~~~~~~~~~~h~~  210 (302)
                       +.|+|++.             ..++++..++                       .|.+||+.++...   ...+..+..
T Consensus       179 -~~~s~dg~-------------~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~---~~~~~~~~~  241 (337)
T 1pby_B          179 -TYAQPDVL-------------AVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMA---MREVRIMDV  241 (337)
T ss_dssp             -TBCCCBCC-------------CCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCEE---EEEEEECSS
T ss_pred             -ceeCCCcc-------------EEeeeccCCCceeeeeeccccccccccccccccceEEEeCCCCCce---EeecCCCCC
Confidence             25566531             1111121222                       4788998765321   223445667


Q ss_pred             ceeEEEeeCCCCCCccEEEEEecCCeEEEEEeccCCcceeeeeeccCCCcEEEEEEccCCCEEEEecCC-ceEEeeecCC
Q 022111          211 WVRSVAWAPNLGLPKSTIASASQDGTVVIWTCAKEGEQWEGRVLKDFKTPVWSVSWSLTGNLLAVADAN-NVTLWKEAVD  289 (302)
Q Consensus       211 ~v~~v~~~p~~~~~~~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~la~~~~d-~i~~w~~~~~  289 (302)
                      .+.+++|+|++    ++++++  ++.|++||+.....  ...+  .....+.+++|+|||++|++++.+ .|++|+....
T Consensus       242 ~~~~~~~s~dg----~~l~~~--~~~v~~~d~~~~~~--~~~~--~~~~~~~~~~~s~dg~~l~~~~~~~~i~v~d~~~~  311 (337)
T 1pby_B          242 FYFSTAVNPAK----TRAFGA--YNVLESFDLEKNAS--IKRV--PLPHSYYSVNVSTDGSTVWLGGALGDLAAYDAETL  311 (337)
T ss_dssp             CEEEEEECTTS----SEEEEE--ESEEEEEETTTTEE--EEEE--ECSSCCCEEEECTTSCEEEEESBSSEEEEEETTTC
T ss_pred             ceeeEEECCCC----CEEEEe--CCeEEEEECCCCcC--ccee--cCCCceeeEEECCCCCEEEEEcCCCcEEEEECcCC
Confidence            78899999996    667766  79999999875321  1111  223467899999999988888666 7999998655


Q ss_pred             ceEEEe
Q 022111          290 GEWQQV  295 (302)
Q Consensus       290 ~~~~~~  295 (302)
                      ..-...
T Consensus       312 ~~~~~~  317 (337)
T 1pby_B          312 EKKGQV  317 (337)
T ss_dssp             CEEEEE
T ss_pred             cEEEEE
Confidence            444333

>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*

Probab=99.81  E-value=2.9e-17  Score=142.78  Aligned_cols=232  Identities=13%  Similarity=0.106  Sum_probs=154.2

Q ss_pred             ceeEEEEccCCCEEE-EeeCCCcEEEEeecCCCceEEEEecCcccC---------eEEEEeeCCCCCCEEEEEe--CCCe
Q 022111           13 TVHDVAMDFYGKRLA-TASSDSSIKIIGLSNSASQHLATLKGHRGP---------VWQVAWAHPKFGSILASCS--YDGQ   80 (302)
Q Consensus        13 ~v~~~~~s~~~~~l~-s~~~d~~v~lw~~~~~~~~~~~~~~~h~~~---------v~~v~~~~~~~~~~l~s~s--~D~~   80 (302)
                      .+..++|++++++++ +...++.|.+||....  +.+..+..+...         +.+++|+++  +++++.++  .++.
T Consensus        90 ~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d--g~~l~~~~~~~~~~  165 (353)
T 3vgz_A           90 KPFGATINNTTQTLWFGNTVNSAVTAIDAKTG--EVKGRLVLDDRKRTEEVRPLQPRELVADDA--TNTVYISGIGKESV  165 (353)
T ss_dssp             CCCSEEEETTTTEEEEEETTTTEEEEEETTTC--CEEEEEESCCCCCCSSCCCCEEEEEEEETT--TTEEEEEEESSSCE
T ss_pred             CcceEEECCCCCEEEEEecCCCEEEEEeCCCC--eeEEEEecCCCccccccCCCCCceEEECCC--CCEEEEEecCCCce
Confidence            466789999998555 4455799999998654  334444443322         678999864  66665554  4889


Q ss_pred             EEEEEcCCCCceeEEEEecCCCCCeeEEEecCCCCCcEEEEEecCCcEEEEEecCCCCeeeeee-cccCCCCeEEEEeCC
Q 022111           81 VIIWKEGNQNDWTQAHTFNDHKSSVNSIAWAPHELGLSLACGSSDGNISVFTATADGGWDTTRI-DQAHPVGVTSVSWAP  159 (302)
Q Consensus        81 i~iwd~~~~~~~~~~~~~~~h~~~i~~l~~~pd~~~~~l~sg~~d~~v~~~~~~~~~~~~~~~~-~~~h~~~v~~~~~~~  159 (302)
                      |.+||.++.   .....+..+...+.+++|+|+  +..+++++.++.+.+||..+......... ..++...+..++|+|
T Consensus       166 i~~~d~~~~---~~~~~~~~~~~~~~~~~~s~d--g~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~  240 (353)
T 3vgz_A          166 IWVVDGGNI---KLKTAIQNTGKMSTGLALDSE--GKRLYTTNADGELITIDTADNKILSRKKLLDDGKEHFFINISLDT  240 (353)
T ss_dssp             EEEEETTTT---EEEEEECCCCTTCCCCEEETT--TTEEEEECTTSEEEEEETTTTEEEEEEECCCSSSCCCEEEEEEET
T ss_pred             EEEEcCCCC---ceEEEecCCCCccceEEECCC--CCEEEEEcCCCeEEEEECCCCeEEEEEEcCCCCCCcccceEEECC
Confidence            999998765   345556545666889999998  66888888999999999865422221111 112344567788988


Q ss_pred             CCCCCceeecccCCCceeEEEeeCCCcEEEEEEecCccccccccccccCCCceeEEEeeCCCCCCccEEEEEecCCeEEE
Q 022111          160 AMAPGALVGLGLLDPVQKLASCGCDNTVKVWKMYNGIWKMDCFPALQMHSDWVRSVAWAPNLGLPKSTIASASQDGTVVI  239 (302)
Q Consensus       160 ~~~~~~~~~~~~~~~~~~l~s~~~D~~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~l~s~s~D~~i~i  239 (302)
                      ++             ...++++..++.|.+||+.++..    ...+....  ..+++|+|++   ...+++...++.|.+
T Consensus       241 dg-------------~~l~~~~~~~~~v~~~d~~~~~~----~~~~~~~~--~~~~~~s~dg---~~l~v~~~~~~~v~~  298 (353)
T 3vgz_A          241 AR-------------QRAFITDSKAAEVLVVDTRNGNI----LAKVAAPE--SLAVLFNPAR---NEAYVTHRQAGKVSV  298 (353)
T ss_dssp             TT-------------TEEEEEESSSSEEEEEETTTCCE----EEEEECSS--CCCEEEETTT---TEEEEEETTTTEEEE
T ss_pred             CC-------------CEEEEEeCCCCEEEEEECCCCcE----EEEEEcCC--CceEEECCCC---CEEEEEECCCCeEEE
Confidence            64             23455556679999999876532    22222222  2569999996   235566667999999


Q ss_pred             EEeccCCcceeeeeeccCCCcEEEEEEccCCCEEEEecCC
Q 022111          240 WTCAKEGEQWEGRVLKDFKTPVWSVSWSLTGNLLAVADAN  279 (302)
Q Consensus       240 wd~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~la~~~~d  279 (302)
                      ||..+...  ...+  .....+.+++|+|||++|.++..+
T Consensus       299 ~d~~~~~~--~~~~--~~~~~~~~~~~s~dg~~l~v~~~~  334 (353)
T 3vgz_A          299 IDAKSYKV--VKTF--DTPTHPNSLALSADGKTLYVSVKQ  334 (353)
T ss_dssp             EETTTTEE--EEEE--ECCSEEEEEEECTTSCEEEEEEEC
T ss_pred             EECCCCeE--EEEE--ecCCCCCeEEEcCCCCEEEEEEcc
Confidence            99875321  1111  223468999999999977666544

>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*

Probab=99.81  E-value=9.4e-18  Score=166.73  Aligned_cols=244  Identities=7%  Similarity=-0.009  Sum_probs=174.0

Q ss_pred             cccccc-ceeEEEEccCCCEEEEeeCCCcEE-EEeecCCCceEEEEecCcccCeEEEEeeCCCCCCEEEEEeCCCeEEEE
Q 022111            7 ETGHED-TVHDVAMDFYGKRLATASSDSSIK-IIGLSNSASQHLATLKGHRGPVWQVAWAHPKFGSILASCSYDGQVIIW   84 (302)
Q Consensus         7 ~~~h~~-~v~~~~~s~~~~~l~s~~~d~~v~-lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~s~D~~i~iw   84 (302)
                      ...|.. .+..++|+ ||+.|+.++.+..+. +|+.....   ...+.+|...+..++|+|+  |++|++++.++.+++|
T Consensus       332 ~~~~~~~~~~~~~~s-dg~~l~~~s~~~~l~~~~d~~~~~---~~~l~~~~~~~~~~~~SpD--G~~la~~~~~~~v~~~  405 (1045)
T 1k32_A          332 VPEPLRIRYVRRGGD-TKVAFIHGTREGDFLGIYDYRTGK---AEKFEENLGNVFAMGVDRN--GKFAVVANDRFEIMTV  405 (1045)
T ss_dssp             CSCCSCEEEEEECSS-SEEEEEEEETTEEEEEEEETTTCC---EEECCCCCCSEEEEEECTT--SSEEEEEETTSEEEEE
T ss_pred             ccCCCcceEEeeeEc-CCCeEEEEECCCceEEEEECCCCC---ceEecCCccceeeeEECCC--CCEEEEECCCCeEEEE
Confidence            345666 88999999 999999999887777 78875432   2344578888999999874  8999999999999999


Q ss_pred             EcCCCCceeEEEEecCCCCCeeEEEecCCCCCcEEEEEecCC----------cEEEEEecCCCCeeeeeecccCCCCeEE
Q 022111           85 KEGNQNDWTQAHTFNDHKSSVNSIAWAPHELGLSLACGSSDG----------NISVFTATADGGWDTTRIDQAHPVGVTS  154 (302)
Q Consensus        85 d~~~~~~~~~~~~~~~h~~~i~~l~~~pd~~~~~l~sg~~d~----------~v~~~~~~~~~~~~~~~~~~~h~~~v~~  154 (302)
                      |+.++.   ....+..|...+.+++|+||  |.+|++++.++          .|++||+....   ...+. .|...+..
T Consensus       406 d~~tg~---~~~~~~~~~~~v~~~~~SpD--G~~la~~~~~~~~~~~~~~~~~i~l~d~~~g~---~~~l~-~~~~~~~~  476 (1045)
T 1k32_A          406 DLETGK---PTVIERSREAMITDFTISDN--SRFIAYGFPLKHGETDGYVMQAIHVYDMEGRK---IFAAT-TENSHDYA  476 (1045)
T ss_dssp             ETTTCC---EEEEEECSSSCCCCEEECTT--SCEEEEEEEECSSTTCSCCEEEEEEEETTTTE---EEECS-CSSSBEEE
T ss_pred             ECCCCc---eEEeccCCCCCccceEECCC--CCeEEEEecCccccccCCCCCeEEEEECCCCc---EEEee-CCCcccCC
Confidence            997753   33344478899999999998  67888877654          89999986431   23333 56667888


Q ss_pred             EEeCCCCCCCceeecccCCCceeEEEeeCCCcEEEEEEecCcc------------------c-----------------c
Q 022111          155 VSWAPAMAPGALVGLGLLDPVQKLASCGCDNTVKVWKMYNGIW------------------K-----------------M  199 (302)
Q Consensus       155 ~~~~~~~~~~~~~~~~~~~~~~~l~s~~~D~~v~iwd~~~~~~------------------~-----------------~  199 (302)
                      +.|+|++              +.|+.++.++..++|+......                  .                 +
T Consensus       477 ~~~spdG--------------~~l~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~  542 (1045)
T 1k32_A          477 PAFDADS--------------KNLYYLSYRSLDPSPDRVVLNFSFEVVSKPFVIPLIPGSPNPTKLVPRSMTSEAGEYDL  542 (1045)
T ss_dssp             EEECTTS--------------CEEEEEESCCCCCEECSSSSCEECCSCBEEEEEESSTTCCCGGGCCCGGGSCCCCCCCC
T ss_pred             ceEcCCC--------------CEEEEEecccCCcCcchhccccccccCceeEEEEeCCCCCCccccCcCccccccccccc
Confidence            9999874              6777777766666665321100                  0                 0


Q ss_pred             ----ccccccccCCCceeEEEeeCCCCCCccEEEE-----------Eec--CCeEEEEEeccCCcceeeeeeccCCCcEE
Q 022111          200 ----DCFPALQMHSDWVRSVAWAPNLGLPKSTIAS-----------ASQ--DGTVVIWTCAKEGEQWEGRVLKDFKTPVW  262 (302)
Q Consensus       200 ----~~~~~~~~h~~~v~~v~~~p~~~~~~~~l~s-----------~s~--D~~i~iwd~~~~~~~~~~~~~~~~~~~v~  262 (302)
                          ..+..+..|.+.+.+++++|++    ..+++           .+.  +..|.+||+.....    ..+.   ..+.
T Consensus       543 ~g~~~~~~~l~~~~~~~~~~~~s~dg----~~~~~~~~~g~~~~~~~~~~~~~~l~~~d~~~~~~----~~l~---~~v~  611 (1045)
T 1k32_A          543 NDMYKRSSPINVDPGDYRMIIPLESS----ILIYSVPVHGEFAAYYQGAPEKGVLLKYDVKTRKV----TEVK---NNLT  611 (1045)
T ss_dssp             TTGGGGCEECSCCCBCEEEEEECSSE----EEEEECCCCCSHHHHHHCCCCCEEEEEEETTTCCE----EEEE---EEEE
T ss_pred             cCHhHceEEcCCCCCChhheEEcCCC----eEEEEecccCcccccccccCCCceEEEEECCCCcE----EEee---cCcc
Confidence                0112334577789999999985    55664           122  44677777654321    1222   5688


Q ss_pred             EEEEccCCCEEEEecCCceEEeeecCCc
Q 022111          263 SVSWSLTGNLLAVADANNVTLWKEAVDG  290 (302)
Q Consensus       263 ~~~~spdg~~la~~~~d~i~~w~~~~~~  290 (302)
                      +++|||||++|++++.+.+++|+.....
T Consensus       612 ~~~~S~DG~~l~~~~~~~i~~~d~~~~~  639 (1045)
T 1k32_A          612 DLRLSADRKTVMVRKDDGKIYTFPLEKP  639 (1045)
T ss_dssp             EEEECTTSCEEEEEETTSCEEEEESSCT
T ss_pred             eEEECCCCCEEEEEcCCcEEEEeCccCc
Confidence            9999999999999988899999986543

>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}

Probab=99.78  E-value=6.9e-18  Score=161.16  Aligned_cols=237  Identities=11%  Similarity=0.093  Sum_probs=152.0

Q ss_pred             EEEEccCCCEEEEeeCCCcEEEEeecCCCceEEEEecCccc---CeEEEEeeCCCCCCEEEEEeC---------CCeEEE
Q 022111           16 DVAMDFYGKRLATASSDSSIKIIGLSNSASQHLATLKGHRG---PVWQVAWAHPKFGSILASCSY---------DGQVII   83 (302)
Q Consensus        16 ~~~~s~~~~~l~s~~~d~~v~lw~~~~~~~~~~~~~~~h~~---~v~~v~~~~~~~~~~l~s~s~---------D~~i~i   83 (302)
                      ++.|+||++++++ +.|++|++|++.++.  ....+.+|..   .+.+++|+|+  |++|++++.         |++|++
T Consensus        20 ~~~~s~dg~~~~~-~~d~~i~~~~~~~g~--~~~~~~~~~~~~~~~~~~~~SpD--g~~la~~~~~~~~~~~s~~~~i~~   94 (719)
T 1z68_A           20 FPNWISGQEYLHQ-SADNNIVLYNIETGQ--SYTILSNRTMKSVNASNYGLSPD--RQFVYLESDYSKLWRYSYTATYYI   94 (719)
T ss_dssp             CCEESSSSEEEEE-CTTSCEEEEESSSCC--EEEEECHHHHHTTTCSEEEECTT--SSEEEEEEEEEECSSSCEEEEEEE
T ss_pred             ccEECCCCeEEEE-cCCCCEEEEEcCCCc--EEEEEccccccccceeeEEECCC--CCeEEEEecCceeEEeecceEEEE
Confidence            6789999976655 469999999987643  3334444543   3889999874  899988876         789999


Q ss_pred             EEcCCCCceeEEEEecCCCCCeeEEEecCCCCCcEEEEEecCCcEEEEEecCCCCeeeeeecccCCCC------------
Q 022111           84 WKEGNQNDWTQAHTFNDHKSSVNSIAWAPHELGLSLACGSSDGNISVFTATADGGWDTTRIDQAHPVG------------  151 (302)
Q Consensus        84 wd~~~~~~~~~~~~~~~h~~~i~~l~~~pd~~~~~l~sg~~d~~v~~~~~~~~~~~~~~~~~~~h~~~------------  151 (302)
                      ||+.++... ....+   ...+..++||||  |+.||.+. ++.|++|++.......+..  .++...            
T Consensus        95 ~d~~~g~~~-~~~~l---~~~~~~~~~SPD--G~~la~~~-~~~i~~~~~~~g~~~~l~~--~~~~~~v~~g~~~~v~~e  165 (719)
T 1z68_A           95 YDLSNGEFV-RGNEL---PRPIQYLCWSPV--GSKLAYVY-QNNIYLKQRPGDPPFQITF--NGRENKIFNGIPDWVYEE  165 (719)
T ss_dssp             EETTTTEEC-CSSCC---CSSBCCEEECSS--TTCEEEEE-TTEEEEESSTTSCCEECCC--CCBTTTEEESSCCHHHHH
T ss_pred             EECCCCccc-cceec---CcccccceECCC--CCEEEEEE-CCeEEEEeCCCCCcEEEec--CCCcCCeEcccccceeee
Confidence            999765210 00122   356889999999  67888875 7899999986543322111  122211            


Q ss_pred             -----eEEEEeCCCCCCCceeecccCCCceeEEEeeCCC----------------------------------cEEEEEE
Q 022111          152 -----VTSVSWAPAMAPGALVGLGLLDPVQKLASCGCDN----------------------------------TVKVWKM  192 (302)
Q Consensus       152 -----v~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~D~----------------------------------~v~iwd~  192 (302)
                           ..++.|+|++              +.|++++.|.                                  .|++||+
T Consensus       166 e~~~~~~~~~wSPDG--------------~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~~yp~~g~~~~~~~l~~~d~  231 (719)
T 1z68_A          166 EMLATKYALWWSPNG--------------KFLAYAEFNDTDIPVIAYSYYGDEQYPRTINIPYPKAGAKNPVVRIFIIDT  231 (719)
T ss_dssp             HTTCSSCCEEECTTS--------------SEEEEEEEECTTSCEEEEEECCSSSSCEEEEEECCBTTSCCCEEEEEEEES
T ss_pred             ecccCcccEEECCCC--------------CEEEEEEECCCCCceEEeeccCCCCCccceeecCCCCCCCCCeeEEEEEEC
Confidence                 1478999874              6777776542                                  7889998


Q ss_pred             ecCcc----ccccccccccCCCceeEEEeeCCCCCCccEEEEEec--CC--eEEEEE----eccCCcceeeeee----cc
Q 022111          193 YNGIW----KMDCFPALQMHSDWVRSVAWAPNLGLPKSTIASASQ--DG--TVVIWT----CAKEGEQWEGRVL----KD  256 (302)
Q Consensus       193 ~~~~~----~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~l~s~s~--D~--~i~iwd----~~~~~~~~~~~~~----~~  256 (302)
                      .++..    .+.....+.+|...+.+++|+||+    ..+++...  ++  .|.+||    +....  . ..+.    ..
T Consensus       232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SpD~----~~~~~~~~~~~~~~~l~~~d~~~~~~~g~--~-~~~~~~~~~~  304 (719)
T 1z68_A          232 TYPAYVGPQEVPVPAMIASSDYYFSWLTWVTDE----RVCLQWLKRVQNVSVLSICDFREDWQTWD--C-PKTQEHIEES  304 (719)
T ss_dssp             SCHHHHCCEECCCCHHHHTSCEEEEEEEESSSS----EEEEEEEESSTTEEEEEEEEECSSSSSEE--C-CGGGEEEEEC
T ss_pred             CCCCccceeEccCCccCCCCcceEEEeEEeCCC----eEEEEEeccccCeEEEEEEcccCCCCCCc--e-EEEEeccccc
Confidence            76531    111112345788899999999994    56666432  22  377777    43321  1 1122    23


Q ss_pred             CCCcEE-----EEEEccCCCEEEE--ecCC---ceEEeeec
Q 022111          257 FKTPVW-----SVSWSLTGNLLAV--ADAN---NVTLWKEA  287 (302)
Q Consensus       257 ~~~~v~-----~~~~spdg~~la~--~~~d---~i~~w~~~  287 (302)
                      +...+.     .++|||||+.|+.  ...+   .|.+|+..
T Consensus       305 ~~~~~~~~~~~~~~~spdg~~l~~~~~~~~g~~~l~~~~~~  345 (719)
T 1z68_A          305 RTGWAGGFFVSTPVFSYDAISYYKIFSDKDGYKHIHYIKDT  345 (719)
T ss_dssp             SSSCSSSSSCCCCEECTTSSCEEEEEECTTSCEEEEEESSC
T ss_pred             CCceEccccCCccEECCCCCeEEEEEEccCCceEEEEEECC
Confidence            444555     7899999996654  3233   36666643

>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A

Probab=99.77  E-value=3.6e-17  Score=152.56  Aligned_cols=229  Identities=12%  Similarity=0.083  Sum_probs=153.6

Q ss_pred             ccc-cceeEEEEccCCCEEEEeeC---CCcEEEEeecC--CCceEEEEecCcccCeEEEEeeCCCCCCEEEEEeCCCeEE
Q 022111            9 GHE-DTVHDVAMDFYGKRLATASS---DSSIKIIGLSN--SASQHLATLKGHRGPVWQVAWAHPKFGSILASCSYDGQVI   82 (302)
Q Consensus         9 ~h~-~~v~~~~~s~~~~~l~s~~~---d~~v~lw~~~~--~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~s~D~~i~   82 (302)
                      .|. ..+..++|+|| +.+++++.   +...+||.+..  .... . .+..+. .+...+|+++.++.++++++.|+ +.
T Consensus        61 ~~~~~~~~~~~~spd-~~l~~~~~~~g~~~~~l~~~~~~~~g~~-~-~l~~~~-~~~~~~~s~dg~~~~~~s~~~~~-~~  135 (582)
T 3o4h_A           61 REPINSVLDPHYGVG-RVILVRDVSKGAEQHALFKVNTSRPGEE-Q-RLEAVK-PMRILSGVDTGEAVVFTGATEDR-VA  135 (582)
T ss_dssp             SSCCSEECEECTTCS-EEEEEEECSTTSCCEEEEEEETTSTTCC-E-ECTTSC-SBEEEEEEECSSCEEEEEECSSC-EE
T ss_pred             cccccccccccCCCC-eEEEEeccCCCCcceEEEEEeccCCCcc-c-cccCCC-CceeeeeCCCCCeEEEEecCCCC-ce
Confidence            344 68999999999 78887765   56677876643  2222 1 332222 23345776653233455555555 45


Q ss_pred             EEEcCCCCceeEEEEecCCCCCeeEEEecCCCCCcEEEEEecC----CcEEEEEecCCCCeeeeeecccCCCCeEEEEeC
Q 022111           83 IWKEGNQNDWTQAHTFNDHKSSVNSIAWAPHELGLSLACGSSD----GNISVFTATADGGWDTTRIDQAHPVGVTSVSWA  158 (302)
Q Consensus        83 iwd~~~~~~~~~~~~~~~h~~~i~~l~~~pd~~~~~l~sg~~d----~~v~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~  158 (302)
                      +||+.++.    ...+..+..  .+++|+||  |+.|++++.+    ..|++||+.....   ..+. .|...+..++|+
T Consensus       136 l~d~~~g~----~~~l~~~~~--~~~~~spD--G~~la~~~~~~~~~~~i~~~d~~~g~~---~~l~-~~~~~~~~~~~S  203 (582)
T 3o4h_A          136 LYALDGGG----LRELARLPG--FGFVSDIR--GDLIAGLGFFGGGRVSLFTSNLSSGGL---RVFD-SGEGSFSSASIS  203 (582)
T ss_dssp             EEEEETTE----EEEEEEESS--CEEEEEEE--TTEEEEEEEEETTEEEEEEEETTTCCC---EEEC-CSSCEEEEEEEC
T ss_pred             EEEccCCc----EEEeecCCC--ceEEECCC--CCEEEEEEEcCCCCeEEEEEcCCCCCc---eEee-cCCCccccceEC
Confidence            99997652    222222322  88999998  7789988877    7788898764332   2332 566778999999


Q ss_pred             CCCCCCceeecccCCCceeEEEeeCCC--cEEEEEEecCccccccccccccCCCceeEEE--------eeCCCCCCccEE
Q 022111          159 PAMAPGALVGLGLLDPVQKLASCGCDN--TVKVWKMYNGIWKMDCFPALQMHSDWVRSVA--------WAPNLGLPKSTI  228 (302)
Q Consensus       159 ~~~~~~~~~~~~~~~~~~~l~s~~~D~--~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~--------~~p~~~~~~~~l  228 (302)
                      |++              +.|+++..++  .|++||+.++..    . .+.+|...+.+++        |+||+    ..+
T Consensus       204 pDG--------------~~l~~~~~~~~~~i~~~d~~~~~~----~-~~~~~~~~~~~~~~~~~~~~~~spdg----~~~  260 (582)
T 3o4h_A          204 PGM--------------KVTAGLETAREARLVTVDPRDGSV----E-DLELPSKDFSSYRPTAITWLGYLPDG----RLA  260 (582)
T ss_dssp             TTS--------------CEEEEEECSSCEEEEEECTTTCCE----E-ECCCSCSHHHHHCCSEEEEEEECTTS----CEE
T ss_pred             CCC--------------CEEEEccCCCeeEEEEEcCCCCcE----E-EccCCCcChhhhhhccccceeEcCCC----cEE
Confidence            974              7888888888  899999877632    2 4566777777777        99995    689


Q ss_pred             EEEecCCeEEEEEeccCCcceeeeeeccCCCcEEEEEEccCCCEEEEecCC-c-eEEeee
Q 022111          229 ASASQDGTVVIWTCAKEGEQWEGRVLKDFKTPVWSVSWSLTGNLLAVADAN-N-VTLWKE  286 (302)
Q Consensus       229 ~s~s~D~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~la~~~~d-~-i~~w~~  286 (302)
                      ++++.|++++||++   +..     .......+.+++|+ ||+++++++.+ . -.+|..
T Consensus       261 ~~~~~~g~~~l~~~---g~~-----~~~~~~~v~~~~~s-dg~~l~~~s~~~~p~~l~~~  311 (582)
T 3o4h_A          261 VVARREGRSAVFID---GER-----VEAPQGNHGRVVLW-RGKLVTSHTSLSTPPRIVSL  311 (582)
T ss_dssp             EEEEETTEEEEEET---TEE-----ECCCSSEEEEEEEE-TTEEEEEEEETTEEEEEEEE
T ss_pred             EEEEcCCcEEEEEE---CCe-----eccCCCceEEEEec-CCEEEEEEcCCCCCCeEEEE
Confidence            99999999999998   211     11233568899999 99988887665 2 344443

>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A

Probab=99.76  E-value=2.1e-15  Score=131.96  Aligned_cols=249  Identities=13%  Similarity=0.084  Sum_probs=152.6

Q ss_pred             CCCEEEEee----CCCcEEEEeecCCCc--eEEEEecCcccCeEEEEeeCCCCCCEEEEEeCC----CeEEEEEcCCC-C
Q 022111           22 YGKRLATAS----SDSSIKIIGLSNSAS--QHLATLKGHRGPVWQVAWAHPKFGSILASCSYD----GQVIIWKEGNQ-N   90 (302)
Q Consensus        22 ~~~~l~s~~----~d~~v~lw~~~~~~~--~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~s~D----~~i~iwd~~~~-~   90 (302)
                      ...+++.|+    .++.|++|.+....+  ..+...  |......++|+++  +++|++++.+    +.+.+|++... .
T Consensus        12 ~~~~~~vg~y~~~~~~~i~~~~~d~~~g~~~~~~~~--~~~~p~~l~~spd--g~~l~~~~~~~~~~~~v~~~~~~~~~g   87 (361)
T 3scy_A           12 SELTMLVGTYTSGNSKGIYTFRFNEETGESLPLSDA--EVANPSYLIPSAD--GKFVYSVNEFSKDQAAVSAFAFDKEKG   87 (361)
T ss_dssp             GEEEEEEEECCSSSCCEEEEEEEETTTCCEEEEEEE--ECSCCCSEEECTT--SSEEEEEECCSSTTCEEEEEEEETTTT
T ss_pred             CceEEEEEeccCCCCCCEEEEEEeCCCCCEEEeecc--cCCCCceEEECCC--CCEEEEEEccCCCCCcEEEEEEeCCCC
Confidence            344556664    467899998864333  333333  6667778999864  7888888876    79999998653 2


Q ss_pred             ceeEEEEecCCCCCeeEEEecCCCCCcEEEEEe-cCCcEEEEEecCCCCeeee-e-ec-cc--------CCCCeEEEEeC
Q 022111           91 DWTQAHTFNDHKSSVNSIAWAPHELGLSLACGS-SDGNISVFTATADGGWDTT-R-ID-QA--------HPVGVTSVSWA  158 (302)
Q Consensus        91 ~~~~~~~~~~h~~~i~~l~~~pd~~~~~l~sg~-~d~~v~~~~~~~~~~~~~~-~-~~-~~--------h~~~v~~~~~~  158 (302)
                      ....+.....+......+++  +  +.+|++++ .++.+.+|++...+..... . .. .+        +...+.+++|+
T Consensus        88 ~~~~~~~~~~~~~~p~~~~~--d--g~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~s  163 (361)
T 3scy_A           88 TLHLLNTQKTMGADPCYLTT--N--GKNIVTANYSGGSITVFPIGQDGALLPASDVIEFKGSGPDKERQTMPHLHCVRIT  163 (361)
T ss_dssp             EEEEEEEEECSSSCEEEEEE--C--SSEEEEEETTTTEEEEEEBCTTSCBCSCSEEEECCCCCSCTTTCSSCCEEEEEEC
T ss_pred             cEEEeeEeccCCCCcEEEEE--C--CCEEEEEECCCCEEEEEEeCCCCcCcccceeEEccCCCCCccccCCCcceEEEEC
Confidence            23344444445556677777  4  44555555 6889999998754432111 0 00 00        11224678888


Q ss_pred             CCCCCCceeecccCCCce-eEEEeeCCCcEEEEEEecCcc----c-ccc----ccccccCCCceeEEEeeCCCCCCccEE
Q 022111          159 PAMAPGALVGLGLLDPVQ-KLASCGCDNTVKVWKMYNGIW----K-MDC----FPALQMHSDWVRSVAWAPNLGLPKSTI  228 (302)
Q Consensus       159 ~~~~~~~~~~~~~~~~~~-~l~s~~~D~~v~iwd~~~~~~----~-~~~----~~~~~~h~~~v~~v~~~p~~~~~~~~l  228 (302)
                      |++              + .++++..++.|++|++.....    . +..    ......+......++|+|++    +++
T Consensus       164 pdg--------------~~l~~~~~~~~~v~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~spdg----~~l  225 (361)
T 3scy_A          164 PDG--------------KYLLADDLGTDQIHKFNINPNANADNKEKFLTKGTPEAFKVAPGSGPRHLIFNSDG----KFA  225 (361)
T ss_dssp             TTS--------------SEEEEEETTTTEEEEEEECTTCCTTTCCCCEEEEEEEEEECCTTCCEEEEEECTTS----SEE
T ss_pred             CCC--------------CEEEEEeCCCCEEEEEEEcCCCCcccccceeecccccceecCCCCCCeEEEEcCCC----CEE
Confidence            864              5 445555688999999975421    1 110    01112334557899999996    556


Q ss_pred             EEEe-cCCeEEEEEeccCCcceeeee--eccCCCcEEEEEEccCCCEEEEecC---CceEEeeec-CCceEEEee
Q 022111          229 ASAS-QDGTVVIWTCAKEGEQWEGRV--LKDFKTPVWSVSWSLTGNLLAVADA---NNVTLWKEA-VDGEWQQVS  296 (302)
Q Consensus       229 ~s~s-~D~~i~iwd~~~~~~~~~~~~--~~~~~~~v~~~~~spdg~~la~~~~---d~i~~w~~~-~~~~~~~~~  296 (302)
                      +.++ .++.|++|++...........  ..........++|||||++|+++..   +.|.+|+.. ..|.+....
T Consensus       226 ~v~~~~~~~v~v~~~~~g~~~~~~~~~~~~~~~~~~~~i~~spdg~~l~v~~~~~~~~i~v~~~~~~~g~~~~~~  300 (361)
T 3scy_A          226 YLINEIGGTVIAFRYADGMLDEIQTVAADTVNAQGSGDIHLSPDGKYLYASNRLKADGVAIFKVDETNGTLTKVG  300 (361)
T ss_dssp             EEEETTTCEEEEEEEETTEEEEEEEEESCSSCCCCEEEEEECTTSSEEEEEECSSSCEEEEEEECTTTCCEEEEE
T ss_pred             EEEcCCCCeEEEEEecCCceEEeEEEecCCCCCCCcccEEECCCCCEEEEECCCCCCEEEEEEEcCCCCcEEEee
Confidence            5555 699999999974311111111  1122244689999999998866643   369999985 456654443

>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...

Probab=99.75  E-value=1.1e-16  Score=153.64  Aligned_cols=244  Identities=11%  Similarity=0.093  Sum_probs=153.4

Q ss_pred             ccceeEEEEccCCCEEEEeeCCCcEEEEeecCCCceEEEEecCcccC-----eEEEEeeCCCCCCEEEEEeCC-------
Q 022111           11 EDTVHDVAMDFYGKRLATASSDSSIKIIGLSNSASQHLATLKGHRGP-----VWQVAWAHPKFGSILASCSYD-------   78 (302)
Q Consensus        11 ~~~v~~~~~s~~~~~l~s~~~d~~v~lw~~~~~~~~~~~~~~~h~~~-----v~~v~~~~~~~~~~l~s~s~D-------   78 (302)
                      .....++.|+||+++++++  |++|++|++.++.  ....+.+|...     ...++|+|+  |++|+.++.+       
T Consensus        16 ~~~~~~~~w~~dg~~~~~~--~~~i~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~Spd--g~~l~~~~~~~~~~r~~   89 (740)
T 4a5s_A           16 RLKLYSLRWISDHEYLYKQ--ENNILVFNAEYGN--SSVFLENSTFDEFGHSINDYSISPD--GQFILLEYNYVKQWRHS   89 (740)
T ss_dssp             CCCCCCEEECSSSEEEEEE--TTEEEEEETTTCC--EEEEECTTTTTTCCSCCCEEEECTT--SSEEEEEEEEEECSSSC
T ss_pred             cccccccEECCCCcEEEEc--CCcEEEEECCCCc--eEEEEechhhhhhcccccceEECCC--CCEEEEEECCeeeEEEc
Confidence            3446678999999988886  9999999987654  33446666533     234778874  8999988876       


Q ss_pred             --CeEEEEEcCCCCceeEEEEecCCCCCeeEEEecCCCCCcEEEEEecCCcEEEEEecCCCCeeeeeecccCCC------
Q 022111           79 --GQVIIWKEGNQNDWTQAHTFNDHKSSVNSIAWAPHELGLSLACGSSDGNISVFTATADGGWDTTRIDQAHPV------  150 (302)
Q Consensus        79 --~~i~iwd~~~~~~~~~~~~~~~h~~~i~~l~~~pd~~~~~l~sg~~d~~v~~~~~~~~~~~~~~~~~~~h~~------  150 (302)
                        +.+.+||+.++.    ...+..|...+...+||||  |+.||.+ .++.|++|+...+....+.. . ++..      
T Consensus        90 ~~~~~~~~d~~~~~----~~~l~~~~~~~~~~~~SPd--G~~la~~-~~~~i~~~~~~~~~~~~lt~-~-g~~~~~~~g~  160 (740)
T 4a5s_A           90 YTASYDIYDLNKRQ----LITEERIPNNTQWVTWSPV--GHKLAYV-WNNDIYVKIEPNLPSYRITW-T-GKEDIIYNGI  160 (740)
T ss_dssp             EEEEEEEEETTTTE----ECCSSCCCTTEEEEEECSS--TTCEEEE-ETTEEEEESSTTSCCEECCS-C-CBTTTEEESB
T ss_pred             cceEEEEEECCCCc----EEEcccCCCcceeeEECCC--CCEEEEE-ECCeEEEEECCCCceEEEcC-C-CCccceecCc
Confidence              456699997752    3456677888999999999  7788887 46899999876443322211 1 2211      


Q ss_pred             -----------CeEEEEeCCCCCCCceeecccCCCceeEEEeeCC-----------------------------------
Q 022111          151 -----------GVTSVSWAPAMAPGALVGLGLLDPVQKLASCGCD-----------------------------------  184 (302)
Q Consensus       151 -----------~v~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~D-----------------------------------  184 (302)
                                 ....+.|||++              +.||..+.|                                   
T Consensus       161 ~~~v~~ee~~~~~~~~~wSpDg--------------~~la~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~yp~~G~~~~  226 (740)
T 4a5s_A          161 TDWVYEEEVFSAYSALWWSPNG--------------TFLAYAQFNDTEVPLIEYSFYSDESLQYPKTVRVPYPKAGAVNP  226 (740)
T ss_dssp             CCHHHHHHTSSSSBCEEECTTS--------------SEEEEEEEECTTCCEEEEEECCSTTCSSCEEEEEECCBTTSCCC
T ss_pred             ccccccchhcCCCcceEECCCC--------------CEEEEEEEcccCCceEEEEeecCCCCCCCcceeecCCCCcCcCC
Confidence                       12358899975              333333221                                   


Q ss_pred             -CcEEEEEEec---Cc--ccccc--ccccccCCCceeEEEeeCCCCCCccEEEEEe----cCCeEEEEEeccCCcce---
Q 022111          185 -NTVKVWKMYN---GI--WKMDC--FPALQMHSDWVRSVAWAPNLGLPKSTIASAS----QDGTVVIWTCAKEGEQW---  249 (302)
Q Consensus       185 -~~v~iwd~~~---~~--~~~~~--~~~~~~h~~~v~~v~~~p~~~~~~~~l~s~s----~D~~i~iwd~~~~~~~~---  249 (302)
                       ..|++||+.+   +.  .....  ...+.+|...+..++|+||+    +.++...    .+..|++||+......+   
T Consensus       227 ~~~l~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~wspdg----~~~~~~~~r~~~~~~i~~~d~~tg~~~~~~~  302 (740)
T 4a5s_A          227 TVKFFVVNTDSLSSVTNATSIQITAPASMLIGDHYLCDVTWATQE----RISLQWLRRIQNYSVMDICDYDESSGRWNCL  302 (740)
T ss_dssp             EEEEEEEETTSCCSSSCCCEEEECCCHHHHTSCEEEEEEEEEETT----EEEEEEEESSTTEEEEEEEEEETTTTEEEEC
T ss_pred             eeEEEEEECCCCCCCCcceEEEecCCccCCCCCeEEEEEEEeCCC----eEEEEEeCCCCCEEEEEEEECCCCcccccee
Confidence             1477788776   41  01010  00122488889999999996    5455443    23479999987643100   


Q ss_pred             -eeee-eccCCCcEE-----EEEEccCCCEEE-EecC-C---ceEEeeec
Q 022111          250 -EGRV-LKDFKTPVW-----SVSWSLTGNLLA-VADA-N---NVTLWKEA  287 (302)
Q Consensus       250 -~~~~-~~~~~~~v~-----~~~~spdg~~la-~~~~-d---~i~~w~~~  287 (302)
                       ...+ ...+...|.     +.+|||||+.|+ ..+. +   .|.+|+..
T Consensus       303 ~~~~l~~~~~~~~v~~~~~~~p~fspDG~~l~~~~s~~~G~~~l~~~~~~  352 (740)
T 4a5s_A          303 VARQHIEMSTTGWVGRFRPSEPHFTLDGNSFYKIISNEEGYRHICYFQID  352 (740)
T ss_dssp             GGGCEEEECSSSCSSSSSCCCCEECTTSSEEEEEEECTTSCEEEEEEETT
T ss_pred             EEEEeeeccCCceEccCcCCCceEcCCCCEEEEEEEcCCCceEEEEEECC
Confidence             0011 122333333     688999999877 5543 2   37777653

>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1

Probab=99.72  E-value=4.2e-14  Score=119.65  Aligned_cols=240  Identities=11%  Similarity=0.115  Sum_probs=160.6

Q ss_pred             ccccceeEEEEccCCCEEEEeeCCCcEEEEeecCCCceEEEEec------CcccCeEEEEeeCCCCCCEEEEEeC-CCeE
Q 022111            9 GHEDTVHDVAMDFYGKRLATASSDSSIKIIGLSNSASQHLATLK------GHRGPVWQVAWAHPKFGSILASCSY-DGQV   81 (302)
Q Consensus         9 ~h~~~v~~~~~s~~~~~l~s~~~d~~v~lw~~~~~~~~~~~~~~------~h~~~v~~v~~~~~~~~~~l~s~s~-D~~i   81 (302)
                      +|-..+.+++++++++++++...++.|++|+....   .+..+.      +|...+..+++.++ +++++++... ++.|
T Consensus        27 g~~~~p~~v~~~~~g~l~v~~~~~~~i~~~d~~g~---~~~~~~~~~~~~~~~~~p~~i~~~~~-~g~l~v~~~~~~~~i  102 (286)
T 1q7f_A           27 GQFTEPSGVAVNAQNDIIVADTNNHRIQIFDKEGR---FKFQFGECGKRDSQLLYPNRVAVVRN-SGDIIVTERSPTHQI  102 (286)
T ss_dssp             TCBSCEEEEEECTTCCEEEEEGGGTEEEEECTTSC---EEEEECCBSSSTTCBSSEEEEEEETT-TTEEEEEECGGGCEE
T ss_pred             CccCCCceEEECCCCCEEEEECCCCEEEEECCCCc---EEEEecccCCCcccccCceEEEEEcC-CCeEEEEcCCCCCEE
Confidence            45567889999999998888888999999997532   233332      34557889998533 3667666643 8899


Q ss_pred             EEEEcCCCCceeEEEEec-CCCCCeeEEEecCCCCCcEEEEEecCCcEEEEEecCCCCeeeeeec-ccCCCCeEEEEeCC
Q 022111           82 IIWKEGNQNDWTQAHTFN-DHKSSVNSIAWAPHELGLSLACGSSDGNISVFTATADGGWDTTRID-QAHPVGVTSVSWAP  159 (302)
Q Consensus        82 ~iwd~~~~~~~~~~~~~~-~h~~~i~~l~~~pd~~~~~l~sg~~d~~v~~~~~~~~~~~~~~~~~-~~h~~~v~~~~~~~  159 (302)
                      .+||. ++.   ....+. .+...+..+++.|+  +.++++...++.|.+|+..  +.. ...+. ..+...+..++++|
T Consensus       103 ~~~d~-~g~---~~~~~~~~~~~~~~~i~~~~~--g~l~v~~~~~~~i~~~~~~--g~~-~~~~~~~~~~~~p~~i~~~~  173 (286)
T 1q7f_A          103 QIYNQ-YGQ---FVRKFGATILQHPRGVTVDNK--GRIIVVECKVMRVIIFDQN--GNV-LHKFGCSKHLEFPNGVVVND  173 (286)
T ss_dssp             EEECT-TSC---EEEEECTTTCSCEEEEEECTT--SCEEEEETTTTEEEEECTT--SCE-EEEEECTTTCSSEEEEEECS
T ss_pred             EEECC-CCc---EEEEecCccCCCceEEEEeCC--CCEEEEECCCCEEEEEcCC--CCE-EEEeCCCCccCCcEEEEECC
Confidence            99984 332   334443 24457899999987  6677777778899999843  222 12221 12334567888877


Q ss_pred             CCCCCceeecccCCCceeEEEeeCCCcEEEEEEecCccccccccccc--cCCCceeEEEeeCCCCCCccEEEEEecCC-e
Q 022111          160 AMAPGALVGLGLLDPVQKLASCGCDNTVKVWKMYNGIWKMDCFPALQ--MHSDWVRSVAWAPNLGLPKSTIASASQDG-T  236 (302)
Q Consensus       160 ~~~~~~~~~~~~~~~~~~l~s~~~D~~v~iwd~~~~~~~~~~~~~~~--~h~~~v~~v~~~p~~~~~~~~l~s~s~D~-~  236 (302)
                      +              +.++++...++.|++||....     .+..+.  ++...+..|+++|++    +.+++...++ .
T Consensus       174 ~--------------g~l~v~~~~~~~i~~~~~~g~-----~~~~~~~~g~~~~p~~i~~d~~G----~l~v~~~~~~~~  230 (286)
T 1q7f_A          174 K--------------QEIFISDNRAHCVKVFNYEGQ-----YLRQIGGEGITNYPIGVGINSNG----EILIADNHNNFN  230 (286)
T ss_dssp             S--------------SEEEEEEGGGTEEEEEETTCC-----EEEEESCTTTSCSEEEEEECTTC----CEEEEECSSSCE
T ss_pred             C--------------CCEEEEECCCCEEEEEcCCCC-----EEEEEccCCccCCCcEEEECCCC----CEEEEeCCCCEE
Confidence            5              467777788899999997432     122232  334678999999985    6778877775 9


Q ss_pred             EEEEEeccCCcceeeeeecc-CCCcEEEEEEccCCCEEEEecCCceEEeeec
Q 022111          237 VVIWTCAKEGEQWEGRVLKD-FKTPVWSVSWSLTGNLLAVADANNVTLWKEA  287 (302)
Q Consensus       237 i~iwd~~~~~~~~~~~~~~~-~~~~v~~~~~spdg~~la~~~~d~i~~w~~~  287 (302)
                      |++||....   ....+... ....+.+++++|+|+++++...+.|++|+..
T Consensus       231 i~~~~~~g~---~~~~~~~~~~~~~~~~i~~~~~g~l~vs~~~~~v~v~~~~  279 (286)
T 1q7f_A          231 LTIFTQDGQ---LISALESKVKHAQCFDVALMDDGSVVLASKDYRLYIYRYV  279 (286)
T ss_dssp             EEEECTTSC---EEEEEEESSCCSCEEEEEEETTTEEEEEETTTEEEEEECS
T ss_pred             EEEECCCCC---EEEEEcccCCCCcceeEEECCCCcEEEECCCCeEEEEEcc
Confidence            999985421   11122111 1234789999999987777543379999864

>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}

Probab=99.71  E-value=4e-16  Score=148.94  Aligned_cols=238  Identities=14%  Similarity=0.180  Sum_probs=149.3

Q ss_pred             ceeEEEEccCCCEEEEeeC---------CCcEEEEeecCCCceEEEEecCcccCeEEEEeeCCCCCCEEEEEeCCCeEEE
Q 022111           13 TVHDVAMDFYGKRLATASS---------DSSIKIIGLSNSASQHLATLKGHRGPVWQVAWAHPKFGSILASCSYDGQVII   83 (302)
Q Consensus        13 ~v~~~~~s~~~~~l~s~~~---------d~~v~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~s~D~~i~i   83 (302)
                      .+.+++|||||++||.++.         |++|++||+.++.......+   ...+..++|+|+  |+.||+++ |+.|++
T Consensus        61 ~~~~~~~SpDg~~la~~~~~~~~~~~s~~~~i~~~d~~~g~~~~~~~l---~~~~~~~~~SPD--G~~la~~~-~~~i~~  134 (719)
T 1z68_A           61 NASNYGLSPDRQFVYLESDYSKLWRYSYTATYYIYDLSNGEFVRGNEL---PRPIQYLCWSPV--GSKLAYVY-QNNIYL  134 (719)
T ss_dssp             TCSEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTTEECCSSCC---CSSBCCEEECSS--TTCEEEEE-TTEEEE
T ss_pred             ceeeEEECCCCCeEEEEecCceeEEeecceEEEEEECCCCccccceec---CcccccceECCC--CCEEEEEE-CCeEEE
Confidence            3889999999999998876         78999999865422000222   245888999875  88998875 789999


Q ss_pred             EEcCCCCceeEEEEecCCCCCe-----------------eEEEecCCCCCcEEEEEecCC--------------------
Q 022111           84 WKEGNQNDWTQAHTFNDHKSSV-----------------NSIAWAPHELGLSLACGSSDG--------------------  126 (302)
Q Consensus        84 wd~~~~~~~~~~~~~~~h~~~i-----------------~~l~~~pd~~~~~l~sg~~d~--------------------  126 (302)
                      |++.++... .+ +..++...|                 .+++|+||  |+.|++++.|.                    
T Consensus       135 ~~~~~g~~~-~l-~~~~~~~~v~~g~~~~v~~ee~~~~~~~~~wSPD--G~~la~~~~d~~~~~~~~~~~~~~~~~~~~~  210 (719)
T 1z68_A          135 KQRPGDPPF-QI-TFNGRENKIFNGIPDWVYEEEMLATKYALWWSPN--GKFLAYAEFNDTDIPVIAYSYYGDEQYPRTI  210 (719)
T ss_dssp             ESSTTSCCE-EC-CCCCBTTTEEESSCCHHHHHHTTCSSCCEEECTT--SSEEEEEEEECTTSCEEEEEECCSSSSCEEE
T ss_pred             EeCCCCCcE-EE-ecCCCcCCeEcccccceeeeecccCcccEEECCC--CCEEEEEEECCCCCceEEeeccCCCCCccce
Confidence            998765321 11 112222222                 58999999  77899887652                    


Q ss_pred             --------------cEEEEEecCCCCe---eee---eecccCCCCeEEEEeCCCCCCCceeecccCCCceeEEEeeC--C
Q 022111          127 --------------NISVFTATADGGW---DTT---RIDQAHPVGVTSVSWAPAMAPGALVGLGLLDPVQKLASCGC--D  184 (302)
Q Consensus       127 --------------~v~~~~~~~~~~~---~~~---~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~--D  184 (302)
                                    .|++||+......   .+.   .+ ..|...+.+++|+|++              +.+++...  +
T Consensus       211 ~~~yp~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~SpD~--------------~~~~~~~~~~~  275 (719)
T 1z68_A          211 NIPYPKAGAKNPVVRIFIIDTTYPAYVGPQEVPVPAMI-ASSDYYFSWLTWVTDE--------------RVCLQWLKRVQ  275 (719)
T ss_dssp             EEECCBTTSCCCEEEEEEEESSCHHHHCCEECCCCHHH-HTSCEEEEEEEESSSS--------------EEEEEEEESST
T ss_pred             eecCCCCCCCCCeeEEEEEECCCCCccceeEccCCccC-CCCcceEEEeEEeCCC--------------eEEEEEecccc
Confidence                          6778877532110   110   01 1466678899999963              55665432  2


Q ss_pred             --CcEEEEE----EecCcccccccccc----ccCCCcee-----EEEeeCCCCCCccEE--EEEecCCe--EEEEEeccC
Q 022111          185 --NTVKVWK----MYNGIWKMDCFPAL----QMHSDWVR-----SVAWAPNLGLPKSTI--ASASQDGT--VVIWTCAKE  245 (302)
Q Consensus       185 --~~v~iwd----~~~~~~~~~~~~~~----~~h~~~v~-----~v~~~p~~~~~~~~l--~s~s~D~~--i~iwd~~~~  245 (302)
                        ..|.+||    +.++.    +...+    .+|..++.     ++.|+||+    +.|  ++...++.  |.+||+...
T Consensus       276 ~~~~l~~~d~~~~~~~g~----~~~~~~~~~~~~~~~~~~~~~~~~~~spdg----~~l~~~~~~~~g~~~l~~~~~~~~  347 (719)
T 1z68_A          276 NVSVLSICDFREDWQTWD----CPKTQEHIEESRTGWAGGFFVSTPVFSYDA----ISYYKIFSDKDGYKHIHYIKDTVE  347 (719)
T ss_dssp             TEEEEEEEEECSSSSSEE----CCGGGEEEEECSSSCSSSSSCCCCEECTTS----SCEEEEEECTTSCEEEEEESSCST
T ss_pred             CeEEEEEEcccCCCCCCc----eEEEEecccccCCceEccccCCccEECCCC----CeEEEEEEccCCceEEEEEECCCC
Confidence              2377888    54442    22233    46778887     89999996    433  34556665  555554332


Q ss_pred             CcceeeeeeccCCCcEEEEEEccCCCEEEEec-C----C-ceEEeeecC
Q 022111          246 GEQWEGRVLKDFKTPVWSVSWSLTGNLLAVAD-A----N-NVTLWKEAV  288 (302)
Q Consensus       246 ~~~~~~~~~~~~~~~v~~~~~spdg~~la~~~-~----d-~i~~w~~~~  288 (302)
                      .    ...+......+..+.++ +|+.|+..+ .    + ..+||....
T Consensus       348 ~----~~~lt~~~~~v~~~~~~-d~~~i~~~~~~~~~~~~~~~l~~~~~  391 (719)
T 1z68_A          348 N----AIQITSGKWEAINIFRV-TQDSLFYSSNEFEEYPGRRNIYRISI  391 (719)
T ss_dssp             T----CEECSCSSSCEEEEEEE-CSSEEEEEESCGGGCTTCBEEEEEEC
T ss_pred             c----eEecccCceEEEEEEEE-eCCEEEEEEecCCCCCceEEEEEEeC
Confidence            1    12233444557777777 777665554 3    2 589998754

>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1

Probab=99.71  E-value=3.3e-14  Score=124.96  Aligned_cols=243  Identities=10%  Similarity=0.095  Sum_probs=149.3

Q ss_pred             EEEEeeCC--CcEEEEeecCCCce--EEEEec-CcccCeEEEEeeCCCCCCEEEEEeCCCeEEEEEcC-CCCceeEEEEe
Q 022111           25 RLATASSD--SSIKIIGLSNSASQ--HLATLK-GHRGPVWQVAWAHPKFGSILASCSYDGQVIIWKEG-NQNDWTQAHTF   98 (302)
Q Consensus        25 ~l~s~~~d--~~v~lw~~~~~~~~--~~~~~~-~h~~~v~~v~~~~~~~~~~l~s~s~D~~i~iwd~~-~~~~~~~~~~~   98 (302)
                      +|+.|+..  +.|.+|+++...++  .+.... ++...+..++|+++  +++|++++.+ .+.+|++. ++. .......
T Consensus         4 ~~~vg~~~~~~~i~~~~~d~~~g~l~~~~~~~~~~~~~~~~~a~spd--g~~l~~~~~~-~v~~~~~~~~g~-~~~~~~~   79 (365)
T 1jof_A            4 HLMIGTWTPPGAIFTVQFDDEKLTCKLIKRTEIPQDEPISWMTFDHE--RKNIYGAAMK-KWSSFAVKSPTE-IVHEASH   79 (365)
T ss_dssp             EEEEEESSSSCEEEEEEEETTTTEEEEEEEEECCTTCCCSEEEECTT--SSEEEEEEBT-EEEEEEEEETTE-EEEEEEE
T ss_pred             EEEEEEccCCCcEEEEEEECCCCCEEEeeEEccCCCCCCcEEEECCC--CCEEEEEccc-eEEEEEECCCCC-EEEeeEe
Confidence            45556543  56888887543332  222221 23345778999864  7888888888 99999986 432 1111121


Q ss_pred             cCCCCCeeEEEecCCCCCc--EEEEEe-------------cCCcEEEEEecCCCCeee-ee-ecccCCCCeEEEEeCCCC
Q 022111           99 NDHKSSVNSIAWAPHELGL--SLACGS-------------SDGNISVFTATADGGWDT-TR-IDQAHPVGVTSVSWAPAM  161 (302)
Q Consensus        99 ~~h~~~i~~l~~~pd~~~~--~l~sg~-------------~d~~v~~~~~~~~~~~~~-~~-~~~~h~~~v~~~~~~~~~  161 (302)
                      ..+ +.+..++|+||  |.  ++++++             .++.+.+|++...+.... .. +...+...+.++.|+|++
T Consensus        80 ~~~-g~~~~~~~spd--g~~l~~~~~~~~~~~~~~~~~~~~~g~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~spdG  156 (365)
T 1jof_A           80 PIG-GHPRANDADTN--TRAIFLLAAKQPPYAVYANPFYKFAGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPTE  156 (365)
T ss_dssp             ECC-SSGGGGCTTSC--CEEEEEEECSSTTCCEEEEEESSSCCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECTTS
T ss_pred             ecC-CCCccEEECCC--CCEEEEEEecCCcceeccceeecCCceEEEEccCCCCcCcceEeeEEeCCCCcceEEEECCCC
Confidence            111 23567889998  55  355553             689999999975443321 11 111234567889999864


Q ss_pred             CCCceeecccCCCceeEEEee-CCCcEEEEEEe-cCccccccccccc--cCCCceeEEEeeCCCCCCccEEEEEec-CCe
Q 022111          162 APGALVGLGLLDPVQKLASCG-CDNTVKVWKMY-NGIWKMDCFPALQ--MHSDWVRSVAWAPNLGLPKSTIASASQ-DGT  236 (302)
Q Consensus       162 ~~~~~~~~~~~~~~~~l~s~~-~D~~v~iwd~~-~~~~~~~~~~~~~--~h~~~v~~v~~~p~~~~~~~~l~s~s~-D~~  236 (302)
                                    ++|+++. .++.|++||+. ++..  ..+..+.  .|...+..++|+|++    ++++++++ ++.
T Consensus       157 --------------~~l~~~~~~~~~v~~~~~~~~g~~--~~~~~~~~~~~g~~p~~~~~spdg----~~l~v~~~~~~~  216 (365)
T 1jof_A          157 --------------TYLYSADLTANKLWTHRKLASGEV--ELVGSVDAPDPGDHPRWVAMHPTG----NYLYALMEAGNR  216 (365)
T ss_dssp             --------------SEEEEEETTTTEEEEEEECTTSCE--EEEEEEECSSTTCCEEEEEECTTS----SEEEEEETTTTE
T ss_pred             --------------CEEEEEcCCCCEEEEEEECCCCCE--EEeeeEecCCCCCCCCEeEECCCC----CEEEEEECCCCe
Confidence                          5566554 46789999997 5532  1122222  245678999999996    56666664 789


Q ss_pred             EEEEEeccCCccee-----eeeec-cC---CC------cEEEEE-EccCCCEEEEecC--C-----ceEEeeecCCceEE
Q 022111          237 VVIWTCAKEGEQWE-----GRVLK-DF---KT------PVWSVS-WSLTGNLLAVADA--N-----NVTLWKEAVDGEWQ  293 (302)
Q Consensus       237 i~iwd~~~~~~~~~-----~~~~~-~~---~~------~v~~~~-~spdg~~la~~~~--d-----~i~~w~~~~~~~~~  293 (302)
                      |++|+++.......     ...+. ++   ..      .+..++ |||||++|++++.  +     .|.+|+....|...
T Consensus       217 v~v~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~spdG~~l~v~~~~~~~~~~~~i~v~~~~~~g~~~  296 (365)
T 1jof_A          217 ICEYVIDPATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFASSRANKFELQGYIAGFKLRDCGSIE  296 (365)
T ss_dssp             EEEEEECTTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEESSTTSCCEEEEEEECTTSCEE
T ss_pred             EEEEEEeCCCCcEEEccceEEcCCCCcCCcccccccccccccEEEECCCCCEEEEECCCCCCCCCCeEEEEEECCCCCEE
Confidence            99998864211111     01111 11   11      488999 9999998877643  4     69999986556655


Q ss_pred             E
Q 022111          294 Q  294 (302)
Q Consensus       294 ~  294 (302)
                      .
T Consensus       297 ~  297 (365)
T 1jof_A          297 K  297 (365)
T ss_dssp             E
T ss_pred             E
Confidence            3

>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*

Probab=99.70  E-value=4.3e-15  Score=127.92  Aligned_cols=225  Identities=13%  Similarity=0.118  Sum_probs=142.8

Q ss_pred             CEEEEeeCCCcEEEEeecCCCceEEEEec-Cccc-CeEEEEeeCCCCCCE-EEEEeCCCeEEEEEcCCCCceeEEEEecC
Q 022111           24 KRLATASSDSSIKIIGLSNSASQHLATLK-GHRG-PVWQVAWAHPKFGSI-LASCSYDGQVIIWKEGNQNDWTQAHTFND  100 (302)
Q Consensus        24 ~~l~s~~~d~~v~lw~~~~~~~~~~~~~~-~h~~-~v~~v~~~~~~~~~~-l~s~s~D~~i~iwd~~~~~~~~~~~~~~~  100 (302)
                      ++|++++.+++|++||..+.  +.+..+. ++.. .+..++|+++  +++ +++++.++.|.+||+.+..   ....+..
T Consensus         2 ~~~v~~~~~~~v~~~d~~~~--~~~~~~~~~~~~~~~~~~~~s~d--g~~l~v~~~~~~~v~~~d~~~~~---~~~~~~~   74 (337)
T 1pby_B            2 DYILAPARPDKLVVIDTEKM--AVDKVITIADAGPTPMVPMVAPG--GRIAYATVNKSESLVKIDLVTGE---TLGRIDL   74 (337)
T ss_dssp             EEEEEEETTTEEEEEETTTT--EEEEEEECTTCTTCCCCEEECTT--SSEEEEEETTTTEEEEEETTTCC---EEEEEEC
T ss_pred             cEEEEcCCCCeEEEEECCCC--cEEEEEEcCCCCCCccceEEcCC--CCEEEEEeCCCCeEEEEECCCCC---eEeeEEc
Confidence            47899999999999998653  4444443 2221 4778999864  654 5666778999999987653   3333331


Q ss_pred             -C----CCCeeEEEecCCCCCcEEEEEe------------cCCcEEEEEecCCCCeeeeeecccCCCCeEEEEeCCCCCC
Q 022111          101 -H----KSSVNSIAWAPHELGLSLACGS------------SDGNISVFTATADGGWDTTRIDQAHPVGVTSVSWAPAMAP  163 (302)
Q Consensus       101 -h----~~~i~~l~~~pd~~~~~l~sg~------------~d~~v~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~  163 (302)
                       +    ...+..++|+|+  +..+++++            .++.|.+||.....  ....+.  ....+..+.|+|++  
T Consensus        75 ~~~~~~~~~~~~~~~s~d--g~~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~--~~~~~~--~~~~~~~~~~s~dg--  146 (337)
T 1pby_B           75 STPEERVKSLFGAALSPD--GKTLAIYESPVRLELTHFEVQPTRVALYDAETLS--RRKAFE--APRQITMLAWARDG--  146 (337)
T ss_dssp             CBTTEEEECTTCEEECTT--SSEEEEEEEEEEECSSCEEECCCEEEEEETTTTE--EEEEEE--CCSSCCCEEECTTS--
T ss_pred             CCcccccccccceEECCC--CCEEEEEecccccccccccccCceEEEEECCCCc--EEEEEe--CCCCcceeEECCCC--
Confidence             1    226788999998  65777775            57999999986432  112222  23346677888864  


Q ss_pred             CceeecccCCCceeEEEeeCCCcEEEEEEecCccccccccccccCCCceeEEEeeCCCCCCccEEEEEecCC--------
Q 022111          164 GALVGLGLLDPVQKLASCGCDNTVKVWKMYNGIWKMDCFPALQMHSDWVRSVAWAPNLGLPKSTIASASQDG--------  235 (302)
Q Consensus       164 ~~~~~~~~~~~~~~l~s~~~D~~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~l~s~s~D~--------  235 (302)
                                  +.|+++  ++.|++||+.++..    ...+..+. +...+.|+|++.   ..++++..++        
T Consensus       147 ------------~~l~~~--~~~i~~~d~~~~~~----~~~~~~~~-~~~~~~~s~dg~---~l~~~~~~~~~~~~~~~~  204 (337)
T 1pby_B          147 ------------SKLYGL--GRDLHVMDPEAGTL----VEDKPIQS-WEAETYAQPDVL---AVWNQHESSGVMATPFYT  204 (337)
T ss_dssp             ------------SCEEEE--SSSEEEEETTTTEE----EEEECSTT-TTTTTBCCCBCC---CCCCCCTTTTEEEEEEEE
T ss_pred             ------------CEEEEe--CCeEEEEECCCCcE----eeeeeccc-cCCCceeCCCcc---EEeeeccCCCceeeeeec
Confidence                        556666  68899999876632    12222221 011236788862   2223333333        


Q ss_pred             ---------------eEEEEEeccCCcceeeeeeccCCCcEEEEEEccCCCEEEEecCCceEEeeecC
Q 022111          236 ---------------TVVIWTCAKEGEQWEGRVLKDFKTPVWSVSWSLTGNLLAVADANNVTLWKEAV  288 (302)
Q Consensus       236 ---------------~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~la~~~~d~i~~w~~~~  288 (302)
                                     .|.+||+......  ......+...+.+++|+|||++|+++ .+.|.+|+...
T Consensus       205 ~~~~~~~~~~~~~~~~v~~~d~~~~~~~--~~~~~~~~~~~~~~~~s~dg~~l~~~-~~~v~~~d~~~  269 (337)
T 1pby_B          205 ARKDIDPADPTAYRTGLLTMDLETGEMA--MREVRIMDVFYFSTAVNPAKTRAFGA-YNVLESFDLEK  269 (337)
T ss_dssp             EBTTSCTTSGGGEEEEEEEEETTTCCEE--EEEEEECSSCEEEEEECTTSSEEEEE-ESEEEEEETTT
T ss_pred             cccccccccccccccceEEEeCCCCCce--EeecCCCCCceeeEEECCCCCEEEEe-CCeEEEEECCC
Confidence                           4688888754221  11123344568899999999999888 45899999754

>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*

Probab=99.69  E-value=3.5e-14  Score=123.06  Aligned_cols=247  Identities=12%  Similarity=0.063  Sum_probs=160.8

Q ss_pred             ccceeEEEEccCCCEEEEeeCC------------------------CcEEEEeecCCCceEEEEec-CcccCeEEEEeeC
Q 022111           11 EDTVHDVAMDFYGKRLATASSD------------------------SSIKIIGLSNSASQHLATLK-GHRGPVWQVAWAH   65 (302)
Q Consensus        11 ~~~v~~~~~s~~~~~l~s~~~d------------------------~~v~lw~~~~~~~~~~~~~~-~h~~~v~~v~~~~   65 (302)
                      -..+.+++++++|+++++...+                        ++|.+||..++  +.+..+. ++-.....|++.+
T Consensus        23 l~~v~~va~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~g--~~~~~~~~~~~~~p~gia~d~  100 (329)
T 3fvz_A           23 PGQVSGVALDSKNNLVIFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPNNA--EILQSSGKNLFYLPHGLSIDT  100 (329)
T ss_dssp             CSCEEEEEECTTCCEEEEECTTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECTTTC--CEEEEECTTTCSSEEEEEECT
T ss_pred             cCCceEEEECCCCCEEEEeCCCCeEEeeccCcceeecccccccccCCcEEEEECCCC--eEEeccCCCccCCceEEEECC
Confidence            3568999999999999888777                        47999987543  3333343 4545678999975


Q ss_pred             CCCCCEEEEEeCCCeEEEEEcCCCCceeEEEEe---------cCCCCCeeEEEecCCCCCcEEEEEe-cCCcEEEEEecC
Q 022111           66 PKFGSILASCSYDGQVIIWKEGNQNDWTQAHTF---------NDHKSSVNSIAWAPHELGLSLACGS-SDGNISVFTATA  135 (302)
Q Consensus        66 ~~~~~~l~s~s~D~~i~iwd~~~~~~~~~~~~~---------~~h~~~i~~l~~~pd~~~~~l~sg~-~d~~v~~~~~~~  135 (302)
                        +|+++++...++.|++||.....  ..+..+         ..+......++++|+. +.++++.+ .++.|++|+.  
T Consensus       101 --~g~l~v~d~~~~~v~~~~~~g~~--~~~~~~~~~~~~g~~~~~~~~P~~ia~~~~~-g~lyv~d~~~~~~I~~~~~--  173 (329)
T 3fvz_A          101 --DGNYWVTDVALHQVFKLDPHSKE--GPLLILGRSMQPGSDQNHFCQPTDVAVEPST-GAVFVSDGYCNSRIVQFSP--  173 (329)
T ss_dssp             --TSCEEEEETTTTEEEEECTTCSS--CCSEEESBTTBCCCSTTCCSSEEEEEECTTT-CCEEEEECSSCCEEEEECT--
T ss_pred             --CCCEEEEECCCCEEEEEeCCCCe--EEEEEecccCCCCCCccccCCCcEEEEeCCC-CeEEEEeCCCCCeEEEEcC--
Confidence              37888888889999999975431  122333         2345578999999942 56777775 6899999983  


Q ss_pred             CCCeeeeeecc---------cCCCCeEEEEeCCCCCCCceeecccCCCceeEEEeeCCCcEEEEEEecCcccccccccc-
Q 022111          136 DGGWDTTRIDQ---------AHPVGVTSVSWAPAMAPGALVGLGLLDPVQKLASCGCDNTVKVWKMYNGIWKMDCFPAL-  205 (302)
Q Consensus       136 ~~~~~~~~~~~---------~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~D~~v~iwd~~~~~~~~~~~~~~-  205 (302)
                      .+... ..+..         .+......++++|+.             +.++++...++.|++||..++.    .+..+ 
T Consensus       174 ~g~~~-~~~~~~g~~~~~~~~~~~~p~gia~d~~~-------------g~l~v~d~~~~~I~~~~~~~G~----~~~~~~  235 (329)
T 3fvz_A          174 SGKFV-TQWGEESSGSSPRPGQFSVPHSLALVPHL-------------DQLCVADRENGRIQCFKTDTKE----FVREIK  235 (329)
T ss_dssp             TSCEE-EEECEECCSSSCCTTEESCEEEEEEETTT-------------TEEEEEETTTTEEEEEETTTCC----EEEEEC
T ss_pred             CCCEE-EEeccCCCCCCCCCcccCCCcEEEEECCC-------------CEEEEEECCCCEEEEEECCCCc----EEEEEe
Confidence            22221 11110         111235667776642             4778888889999999987553    22222 


Q ss_pred             -ccCCCceeEEEeeCCCCC---CccEEEEEecCCeEEEEEeccCCcceeeeee--ccCCCcEEEEEEccCCCEEEEecCC
Q 022111          206 -QMHSDWVRSVAWAPNLGL---PKSTIASASQDGTVVIWTCAKEGEQWEGRVL--KDFKTPVWSVSWSLTGNLLAVADAN  279 (302)
Q Consensus       206 -~~h~~~v~~v~~~p~~~~---~~~~l~s~s~D~~i~iwd~~~~~~~~~~~~~--~~~~~~v~~~~~spdg~~la~~~~d  279 (302)
                       ..+...+.+++|+| +..   +++..++.+.+..|++||......  ...+.  ......+.+|+++|+|+++++...+
T Consensus       236 ~~~~~~~~~~~~~~p-g~~~~~~g~~~v~~~~~~~v~~~~~~~g~~--~~~~~~~~~~~~~p~~ia~~~dG~lyvad~~~  312 (329)
T 3fvz_A          236 HASFGRNVFAISYIP-GFLFAVNGKPYFGDQEPVQGFVMNFSSGEI--IDVFKPVRKHFDMPHDIVASEDGTVYIGDAHT  312 (329)
T ss_dssp             CTTTTTCEEEEEEET-TEEEEEECCCCTTCSCCCCEEEEETTTCCE--EEEECCSSSCCSSEEEEEECTTSEEEEEESSS
T ss_pred             ccccCCCcceeeecC-CEEEEeCCCEEeccCCCcEEEEEEcCCCeE--EEEEcCCCCccCCeeEEEECCCCCEEEEECCC
Confidence             34667789999999 200   012233334456899999765421  11111  2334568999999999777766656


Q ss_pred             -ceEEeeec
Q 022111          280 -NVTLWKEA  287 (302)
Q Consensus       280 -~i~~w~~~  287 (302)
                       .|++|+..
T Consensus       313 ~~I~~~~~~  321 (329)
T 3fvz_A          313 NTVWKFTLT  321 (329)
T ss_dssp             CCEEEEEEE
T ss_pred             CEEEEEeCC
Confidence             79999864

>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}

Probab=99.68  E-value=2.9e-15  Score=132.04  Aligned_cols=240  Identities=10%  Similarity=0.034  Sum_probs=143.0

Q ss_pred             EEEccCCCEEEEeeC-CCc--EEEEeecCCCceEEEEecCcccCeEEEEeeCCCCCCEEEEEeCCCeEEEEEcCCCCcee
Q 022111           17 VAMDFYGKRLATASS-DSS--IKIIGLSNSASQHLATLKGHRGPVWQVAWAHPKFGSILASCSYDGQVIIWKEGNQNDWT   93 (302)
Q Consensus        17 ~~~s~~~~~l~s~~~-d~~--v~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~s~D~~i~iwd~~~~~~~~   93 (302)
                      .+|+|||++|+.++. ++.  |.+||+.+  .+......+|...+..++|+|+  |+.|+.++.++.+.+||+.++..  
T Consensus        41 ~~~SpDg~~l~~~~~~~g~~~l~~~d~~~--g~~~~lt~~~~~~~~~~~~spd--g~~l~~~~~~~~l~~~d~~~g~~--  114 (388)
T 3pe7_A           41 KCFTRDGSKLLFGGAFDGPWNYYLLDLNT--QVATQLTEGRGDNTFGGFLSPD--DDALFYVKDGRNLMRVDLATLEE--  114 (388)
T ss_dssp             CCBCTTSCEEEEEECTTSSCEEEEEETTT--CEEEECCCSSCBCSSSCEECTT--SSEEEEEETTTEEEEEETTTCCE--
T ss_pred             ccCCCCCCEEEEEEcCCCCceEEEEeCCC--CceEEeeeCCCCCccceEEcCC--CCEEEEEeCCCeEEEEECCCCcc--
Confidence            789999999998887 675  56666644  3443444556655656789874  89999999999999999977532  


Q ss_pred             EEEEecCCCCCeeEEEe--cCCCCCcEEEEE----------------------ecCCcEEEEEecCCCCeeeeeecccCC
Q 022111           94 QAHTFNDHKSSVNSIAW--APHELGLSLACG----------------------SSDGNISVFTATADGGWDTTRIDQAHP  149 (302)
Q Consensus        94 ~~~~~~~h~~~i~~l~~--~pd~~~~~l~sg----------------------~~d~~v~~~~~~~~~~~~~~~~~~~h~  149 (302)
                       ...+..+...+....|  +|+  +..++..                      ..+..|.+||+.... .  ..+. .+.
T Consensus       115 -~~~~~~~~~~~~~~~~~~~~d--g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g~-~--~~l~-~~~  187 (388)
T 3pe7_A          115 -NVVYQVPAEWVGYGTWVANSD--CTKLVGIEIRREDWVPLTDWKKFHEFYFTKPCCRLMRVDLKTGE-S--TVIL-QEN  187 (388)
T ss_dssp             -EEEEECCTTEEEEEEEEECTT--SSEEEEEEEEGGGCCCCCSHHHHHHHGGGCCCEEEEEEETTTCC-E--EEEE-EES
T ss_pred             -eeeeechhhcccccceeECCC--CCeeccccccCcccccccccchhhhhhccCCcceEEEEECCCCc-e--EEee-cCC
Confidence             2233345555544444  676  5566532                      234677888876432 2  2222 344


Q ss_pred             CCeEEEEeCC-CCCCCceeecccCCCceeEEEeeCC------CcEEEEEEecCccccccccccccCC--CceeEEEeeCC
Q 022111          150 VGVTSVSWAP-AMAPGALVGLGLLDPVQKLASCGCD------NTVKVWKMYNGIWKMDCFPALQMHS--DWVRSVAWAPN  220 (302)
Q Consensus       150 ~~v~~~~~~~-~~~~~~~~~~~~~~~~~~l~s~~~D------~~v~iwd~~~~~~~~~~~~~~~~h~--~~v~~v~~~p~  220 (302)
                      ..+..+.|+| ++              +.|+.++.+      ..|.++|+.++.     ...+..+.  ..+..++|+||
T Consensus       188 ~~~~~~~~sp~dg--------------~~l~~~~~~~~~~~~~~l~~~d~~~~~-----~~~l~~~~~~~~~~~~~~spd  248 (388)
T 3pe7_A          188 QWLGHPIYRPYDD--------------STVAFCHEGPHDLVDARMWLINEDGTN-----MRKVKTHAEGESCTHEFWVPD  248 (388)
T ss_dssp             SCEEEEEEETTEE--------------EEEEEEECSCTTTSSCSEEEEETTSCC-----CEESCCCCTTEEEEEEEECTT
T ss_pred             ccccccEECCCCC--------------CEEEEEEecCCCCCcceEEEEeCCCCc-----eEEeeeCCCCcccccceECCC
Confidence            5678899998 63              666666543      256666654432     12233333  35888999999


Q ss_pred             CCCCccEEEEEec-CC----eEEEEEeccCCcceeeeeeccCCCc---EEEEEEccCCCEEEEe---------cCC-ceE
Q 022111          221 LGLPKSTIASASQ-DG----TVVIWTCAKEGEQWEGRVLKDFKTP---VWSVSWSLTGNLLAVA---------DAN-NVT  282 (302)
Q Consensus       221 ~~~~~~~l~s~s~-D~----~i~iwd~~~~~~~~~~~~~~~~~~~---v~~~~~spdg~~la~~---------~~d-~i~  282 (302)
                      +    +.|+..+. ++    .|.+||+.......... .......   ...++|||||+.|+..         ..+ .|.
T Consensus       249 g----~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~~-~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~i~  323 (388)
T 3pe7_A          249 G----SALVYVSYLKGSPDRFIYSADPETLENRQLTS-MPACSHLMSNYDGSLMVGDGSDAPVDVQDDSGYKIENDPFLY  323 (388)
T ss_dssp             S----SCEEEEEEETTCCCEEEEEECTTTCCEEEEEE-ECCEEEEEECTTSSEEEEEECCC------------CCCCEEE
T ss_pred             C----CEEEEEecCCCCCcceEEEEecCCCceEEEEc-CCCceeeeecCCCCeEccCCCcceeEeeeccccccCCCCEEE
Confidence            6    55655443 22    39999987543211101 1110000   1123799999988764         233 699


Q ss_pred             EeeecCCceEEE
Q 022111          283 LWKEAVDGEWQQ  294 (302)
Q Consensus       283 ~w~~~~~~~~~~  294 (302)
                      +|+... ++..+
T Consensus       324 ~~d~~~-~~~~~  334 (388)
T 3pe7_A          324 VFNMKN-GTQHR  334 (388)
T ss_dssp             EEETTT-TEEEE
T ss_pred             EEeccC-CceEE
Confidence            999754 44333

>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}

Probab=99.67  E-value=1.2e-15  Score=134.61  Aligned_cols=246  Identities=8%  Similarity=0.025  Sum_probs=146.4

Q ss_pred             ccccccceeEEEEccCCCEEEEeeCCCcEEEEeecCCCceEEEEecCcccCeEEEEeeCCCCCCEEEEE-----------
Q 022111            7 ETGHEDTVHDVAMDFYGKRLATASSDSSIKIIGLSNSASQHLATLKGHRGPVWQVAWAHPKFGSILASC-----------   75 (302)
Q Consensus         7 ~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~-----------   75 (302)
                      ..+|...+..+.|+|||+.|+.++.++.+++||+.......+  +..+...+....|....++++++..           
T Consensus        76 t~~~~~~~~~~~~spdg~~l~~~~~~~~l~~~d~~~g~~~~~--~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~~  153 (388)
T 3pe7_A           76 TEGRGDNTFGGFLSPDDDALFYVKDGRNLMRVDLATLEENVV--YQVPAEWVGYGTWVANSDCTKLVGIEIRREDWVPLT  153 (388)
T ss_dssp             CCSSCBCSSSCEECTTSSEEEEEETTTEEEEEETTTCCEEEE--EECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCC
T ss_pred             eeCCCCCccceEEcCCCCEEEEEeCCCeEEEEECCCCcceee--eechhhcccccceeECCCCCeeccccccCccccccc
Confidence            345555555678999999999999999999999976543333  3334444443443211247777642           


Q ss_pred             -----------eCCCeEEEEEcCCCCceeEEEEecCCCCCeeEEEecC-CCCCcEEEEEecC------CcEEEEEecCCC
Q 022111           76 -----------SYDGQVIIWKEGNQNDWTQAHTFNDHKSSVNSIAWAP-HELGLSLACGSSD------GNISVFTATADG  137 (302)
Q Consensus        76 -----------s~D~~i~iwd~~~~~~~~~~~~~~~h~~~i~~l~~~p-d~~~~~l~sg~~d------~~v~~~~~~~~~  137 (302)
                                 ..+..|.+||+.++.    ...+..+...+..++|+| |  +..|+....+      ..|.+++.....
T Consensus       154 ~~~~~~~~~~~~~~~~l~~~d~~~g~----~~~l~~~~~~~~~~~~sp~d--g~~l~~~~~~~~~~~~~~l~~~d~~~~~  227 (388)
T 3pe7_A          154 DWKKFHEFYFTKPCCRLMRVDLKTGE----STVILQENQWLGHPIYRPYD--DSTVAFCHEGPHDLVDARMWLINEDGTN  227 (388)
T ss_dssp             SHHHHHHHGGGCCCEEEEEEETTTCC----EEEEEEESSCEEEEEEETTE--EEEEEEEECSCTTTSSCSEEEEETTSCC
T ss_pred             ccchhhhhhccCCcceEEEEECCCCc----eEEeecCCccccccEECCCC--CCEEEEEEecCCCCCcceEEEEeCCCCc
Confidence                       244678999987653    233334667789999999 7  6677776653      256666654221


Q ss_pred             CeeeeeecccCC-CCeEEEEeCCCCCCCceeecccCCCceeEEEeeC--CC---cEEEEEEecCccccccccccccCCCc
Q 022111          138 GWDTTRIDQAHP-VGVTSVSWAPAMAPGALVGLGLLDPVQKLASCGC--DN---TVKVWKMYNGIWKMDCFPALQMHSDW  211 (302)
Q Consensus       138 ~~~~~~~~~~h~-~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~--D~---~v~iwd~~~~~~~~~~~~~~~~h~~~  211 (302)
                      .   ..+...+. ..+..+.|+|++              +.|+..+.  ++   .|++||+.++..  ..+..+.++...
T Consensus       228 ~---~~l~~~~~~~~~~~~~~spdg--------------~~l~~~~~~~~~~~~~l~~~d~~~g~~--~~l~~~~~~~~~  288 (388)
T 3pe7_A          228 M---RKVKTHAEGESCTHEFWVPDG--------------SALVYVSYLKGSPDRFIYSADPETLEN--RQLTSMPACSHL  288 (388)
T ss_dssp             C---EESCCCCTTEEEEEEEECTTS--------------SCEEEEEEETTCCCEEEEEECTTTCCE--EEEEEECCEEEE
T ss_pred             e---EEeeeCCCCcccccceECCCC--------------CEEEEEecCCCCCcceEEEEecCCCce--EEEEcCCCceee
Confidence            1   22221221 246788999974              44544332  22   399999877632  112222221110


Q ss_pred             ---eeEEEeeCCCCCCccEEEEE---------ecCCeEEEEEeccCCcceeeeeeccCCC-----------cEEEEEEcc
Q 022111          212 ---VRSVAWAPNLGLPKSTIASA---------SQDGTVVIWTCAKEGEQWEGRVLKDFKT-----------PVWSVSWSL  268 (302)
Q Consensus       212 ---v~~v~~~p~~~~~~~~l~s~---------s~D~~i~iwd~~~~~~~~~~~~~~~~~~-----------~v~~~~~sp  268 (302)
                         ...++|+||+    +.|+..         ..+..|.+||+.....    ..+..+..           .+.+++|||
T Consensus       289 ~~~~~~~~~spdg----~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~~----~~l~~~~~~~~~~~~~~~~~~~~~~~sp  360 (388)
T 3pe7_A          289 MSNYDGSLMVGDG----SDAPVDVQDDSGYKIENDPFLYVFNMKNGTQ----HRVARHDTSWKVFEGDRQVTHPHPSFTP  360 (388)
T ss_dssp             EECTTSSEEEEEE----CCC------------CCCCEEEEEETTTTEE----EEEEECCCCCCCBTTBSSTTCCCCEECT
T ss_pred             eecCCCCeEccCC----CcceeEeeeccccccCCCCEEEEEeccCCce----EEeccccCcccccccccccCCCCccCCC
Confidence               1123789986    445532         4567899999875321    11222222           467889999


Q ss_pred             CCCEEEEecC-C-ceEEeeec
Q 022111          269 TGNLLAVADA-N-NVTLWKEA  287 (302)
Q Consensus       269 dg~~la~~~~-d-~i~~w~~~  287 (302)
                      ||+.|+.++. + ...||.+.
T Consensus       361 Dg~~l~~~s~~~g~~~l~~~~  381 (388)
T 3pe7_A          361 DDKQILFTSDVHGKPALYLAT  381 (388)
T ss_dssp             TSSEEEEEECTTSSCEEEEEE
T ss_pred             CCCEEEEEecCCCceeEEEEE
Confidence            9998887764 3 57777764

>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A

Probab=99.64  E-value=5.2e-14  Score=133.00  Aligned_cols=244  Identities=12%  Similarity=0.044  Sum_probs=147.9

Q ss_pred             EEEEc--cCCCE-EEEeeC-CCcEEEEeec--C-CCceEEEEecC-----cccCeEEEEeeCCCCCCEEEEEeCC-----
Q 022111           16 DVAMD--FYGKR-LATASS-DSSIKIIGLS--N-SASQHLATLKG-----HRGPVWQVAWAHPKFGSILASCSYD-----   78 (302)
Q Consensus        16 ~~~~s--~~~~~-l~s~~~-d~~v~lw~~~--~-~~~~~~~~~~~-----h~~~v~~v~~~~~~~~~~l~s~s~D-----   78 (302)
                      ...|+  |||++ |+.++. +..|.++++.  . +.   ...+..     |...+..++|+|+  |+.|++++.|     
T Consensus        81 ~~~~~~SPDg~~~la~~~~~~~~l~~~~~~~~g~~~---~~~l~~~~~~~~~~~~~~~~~spD--g~~l~~~~~~~~~~~  155 (662)
T 3azo_A           81 PWAGVPRPAGGPLLVFTHFGDQRLYAFEPDAPGGAV---PRPLTPVSAVGGGLRWADPVLLPE--RGEVWCMAEEFTGEG  155 (662)
T ss_dssp             CEEEECCSSSSCEEEEEBTTTCCEEEECTTSTTCCC---CEECSCCCCSTTCEEEEEEEEETT--TTEEEEEEEEECSSS
T ss_pred             cceeeeecCCCeEEEEEECCCCeEEEEcCCCCCCCC---CEeccCCccCCCCccccCcEECCC--CCEEEEEEecccCCC
Confidence            45454  99988 765543 4455555543  1 22   234444     6777889999975  8899988877     


Q ss_pred             -----CeEEEEEcCCC-----CceeEEEEec-CCCCCeeEEEecCCCCCcEEEEEecCC--------cEEEEEecCCCCe
Q 022111           79 -----GQVIIWKEGNQ-----NDWTQAHTFN-DHKSSVNSIAWAPHELGLSLACGSSDG--------NISVFTATADGGW  139 (302)
Q Consensus        79 -----~~i~iwd~~~~-----~~~~~~~~~~-~h~~~i~~l~~~pd~~~~~l~sg~~d~--------~v~~~~~~~~~~~  139 (302)
                           .+|.+||+.+.     .   ....+. .+...+..++|+||  |++|+.++.++        .|.+|++...+..
T Consensus       156 ~~~~~~~i~~~~~~~~~~~~~~---~~~~l~~~~~~~~~~~~~SpD--G~~la~~~~~~~~~~~~~~~i~~~d~~~~g~~  230 (662)
T 3azo_A          156 PSDVRRFLAAVPLDGSAAADRS---AVRELSDDAHRFVTGPRLSPD--GRQAVWLAWDHPRMPWEGTELKTARVTEDGRF  230 (662)
T ss_dssp             TTCEEEEEEEEETTSTTTTCGG---GSEESSCSCSSEECCCEECTT--SSEEEEEEECTTCCTTTCEEEEEEEECTTSCE
T ss_pred             CCCceeEEEEEECCCCccccCC---ceeEEEecCCCcccCceECCC--CCEEEEEECCCCCCCCCCcEEEEEEECCCCcc
Confidence                 58999998761     1   123454 56677888999998  77888777553        7889998732311


Q ss_pred             -eeeeecccCCCCeEEEEeCCCCCCCceeecccCCCceeEEEeeCCCcEEEEEEe--cCccccccccccccCCCc-----
Q 022111          140 -DTTRIDQAHPVGVTSVSWAPAMAPGALVGLGLLDPVQKLASCGCDNTVKVWKMY--NGIWKMDCFPALQMHSDW-----  211 (302)
Q Consensus       140 -~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~D~~v~iwd~~--~~~~~~~~~~~~~~h~~~-----  211 (302)
                       ....+...|...+..+.|+|++              ++++++..++..+||.+.  ++..  .  ....++...     
T Consensus       231 ~~~~~l~~~~~~~~~~~~~spdg--------------~l~~~~~~~~~~~l~~~~~~~~~~--~--~l~~~~~~~~~p~w  292 (662)
T 3azo_A          231 ADTRTLLGGPEEAIAQAEWAPDG--------------SLIVATDRTGWWNLHRVDPATGAA--T--QLCRREEEFAGPLW  292 (662)
T ss_dssp             EEEEEEEEETTBCEEEEEECTTS--------------CEEEEECTTSSCEEEEECTTTCCE--E--ESSCCSSBSSCCCC
T ss_pred             cccEEeCCCCCceEcceEECCCC--------------eEEEEECCCCCeEEEEEECCCCce--e--ecccccccccCccc
Confidence             2223333456778899999974              577888888855555543  3321  1  111122221     


Q ss_pred             ---eeEEEeeCCCCCCccEEEEEecCCeEEEEEeccCCcceeeeeeccCCCcEEEEEEccCCCEE--EEecCC-ceEEee
Q 022111          212 ---VRSVAWAPNLGLPKSTIASASQDGTVVIWTCAKEGEQWEGRVLKDFKTPVWSVSWSLTGNLL--AVADAN-NVTLWK  285 (302)
Q Consensus       212 ---v~~v~~~p~~~~~~~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l--a~~~~d-~i~~w~  285 (302)
                         +.+++|+|++    ..+++++. +.++||.++.....  ...+..+...+.++ |+++++.+  ++++.+ ...+|.
T Consensus       293 ~~~~~~~~~~~~~----~~~~~~~~-~~~~l~~~d~~~~~--~~~l~~~~~~~~~~-~s~~~~~~~~~~~~~~~~~~i~~  364 (662)
T 3azo_A          293 TPGMRWFAPLANG----LIAVVHGK-GAAVLGILDPESGE--LVDAAGPWTEWAAT-LTVSGTRAVGVAASPRTAYEVVE  364 (662)
T ss_dssp             STTCCSEEECTTS----CEEEEEBS-SSCEEEEEETTTTE--EEECCSSCCEEEEE-EEEETTEEEEEEEETTEEEEEEE
T ss_pred             cccCceEeEeCCC----EEEEEEEc-CccEEEEEECCCCc--EEEecCCCCeEEEE-EecCCCEEEEEEcCCCCCCEEEE
Confidence               5678888885    67888888 99999966533221  12233444556666 14455433  344444 355555


Q ss_pred             ec-CCceEEEe
Q 022111          286 EA-VDGEWQQV  295 (302)
Q Consensus       286 ~~-~~~~~~~~  295 (302)
                      .. ..++....
T Consensus       365 ~d~~~g~~~~l  375 (662)
T 3azo_A          365 LDTVTGRARTI  375 (662)
T ss_dssp             EETTTCCEEEE
T ss_pred             EECCCCceEEe
Confidence            42 23444433

>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A

Probab=99.64  E-value=2e-14  Score=135.78  Aligned_cols=256  Identities=11%  Similarity=0.062  Sum_probs=160.6

Q ss_pred             ccccccceeEEEEccCCCEEEEe--eCCCcEEEEeecCCCceEEEEecCcccCeE---------EEEeeC-CCCCCE-EE
Q 022111            7 ETGHEDTVHDVAMDFYGKRLATA--SSDSSIKIIGLSNSASQHLATLKGHRGPVW---------QVAWAH-PKFGSI-LA   73 (302)
Q Consensus         7 ~~~h~~~v~~~~~s~~~~~l~s~--~~d~~v~lw~~~~~~~~~~~~~~~h~~~v~---------~v~~~~-~~~~~~-l~   73 (302)
                      +.+|...+..++|+++.-++++.  +.++..+||..... . ....+..|...+.         ..+|+. | +|++ |+
T Consensus        19 ~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l~~~~~~-~-~~~~l~~~~~~~~~~~~~~~~~~~~~~~SP-Dg~~~la   95 (662)
T 3azo_A           19 VASRSGRPACVGAVGDEVWWVAPRPAEAGRATLVRRRAD-G-AEESALPAPWNVRNRVFEYSGFPWAGVPRP-AGGPLLV   95 (662)
T ss_dssp             HHHTCSCCEEEEEETTEEEEEEEETTTTTEEEEEEECTT-S-CEEESSCTTCCBCCCGGGTCCCCEEEECCS-SSSCEEE
T ss_pred             HhhcCCccceeEEcCCeEEEEecCcccCCcEEEEEECCC-C-CcceeCCCCccccccccccCCccceeeeec-CCCeEEE
Confidence            45788899999999877677776  56889999986332 2 2455666766666         566762 3 3676 66


Q ss_pred             EEeC-CCeEEEEEcC--C-CCceeEEEEecC-----CCCCeeEEEecCCCCCcEEEEEecC----------CcEEEEEec
Q 022111           74 SCSY-DGQVIIWKEG--N-QNDWTQAHTFND-----HKSSVNSIAWAPHELGLSLACGSSD----------GNISVFTAT  134 (302)
Q Consensus        74 s~s~-D~~i~iwd~~--~-~~~~~~~~~~~~-----h~~~i~~l~~~pd~~~~~l~sg~~d----------~~v~~~~~~  134 (302)
                      ..+. +..|.++++.  . +    ....+..     |...+..++|+||  |+.|++++.+          ..|.+|++.
T Consensus        96 ~~~~~~~~l~~~~~~~~g~~----~~~~l~~~~~~~~~~~~~~~~~spD--g~~l~~~~~~~~~~~~~~~~~~i~~~~~~  169 (662)
T 3azo_A           96 FTHFGDQRLYAFEPDAPGGA----VPRPLTPVSAVGGGLRWADPVLLPE--RGEVWCMAEEFTGEGPSDVRRFLAAVPLD  169 (662)
T ss_dssp             EEBTTTCCEEEECTTSTTCC----CCEECSCCCCSTTCEEEEEEEEETT--TTEEEEEEEEECSSSTTCEEEEEEEEETT
T ss_pred             EEECCCCeEEEEcCCCCCCC----CCEeccCCccCCCCccccCcEECCC--CCEEEEEEecccCCCCCCceeEEEEEECC
Confidence            5543 4555555543  1 2    1234444     6678899999998  6788888876          578888876


Q ss_pred             CC-----CCeeeeeecccCCCCeEEEEeCCCCCCCceeecccCCCceeEEEeeCC--------CcEEEEEEe-cCccccc
Q 022111          135 AD-----GGWDTTRIDQAHPVGVTSVSWAPAMAPGALVGLGLLDPVQKLASCGCD--------NTVKVWKMY-NGIWKMD  200 (302)
Q Consensus       135 ~~-----~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~D--------~~v~iwd~~-~~~~~~~  200 (302)
                      ..     +..  ..+...+...+..+.|+|++              +.|+.++.+        ..|++||+. ++... .
T Consensus       170 ~~~~~~~~~~--~~l~~~~~~~~~~~~~SpDG--------------~~la~~~~~~~~~~~~~~~i~~~d~~~~g~~~-~  232 (662)
T 3azo_A          170 GSAAADRSAV--RELSDDAHRFVTGPRLSPDG--------------RQAVWLAWDHPRMPWEGTELKTARVTEDGRFA-D  232 (662)
T ss_dssp             STTTTCGGGS--EESSCSCSSEECCCEECTTS--------------SEEEEEEECTTCCTTTCEEEEEEEECTTSCEE-E
T ss_pred             CCccccCCce--eEEEecCCCcccCceECCCC--------------CEEEEEECCCCCCCCCCcEEEEEEECCCCccc-c
Confidence            41     221  22210234456778899864              677777654        379999998 44110 1


Q ss_pred             cccccccCCCceeEEEeeCCCCCCccEEEEEecCCeEEEEEeccCCcceeeeeeccCC---Cc-----EEEEEEccCCCE
Q 022111          201 CFPALQMHSDWVRSVAWAPNLGLPKSTIASASQDGTVVIWTCAKEGEQWEGRVLKDFK---TP-----VWSVSWSLTGNL  272 (302)
Q Consensus       201 ~~~~~~~h~~~v~~v~~~p~~~~~~~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~~~---~~-----v~~~~~spdg~~  272 (302)
                      ......+|...+.+++|+||+    +.+++++.|+..+||.++....... .+.....   .+     +.+++|+|++++
T Consensus       233 ~~~l~~~~~~~~~~~~~spdg----~l~~~~~~~~~~~l~~~~~~~~~~~-~l~~~~~~~~~p~w~~~~~~~~~~~~~~~  307 (662)
T 3azo_A          233 TRTLLGGPEEAIAQAEWAPDG----SLIVATDRTGWWNLHRVDPATGAAT-QLCRREEEFAGPLWTPGMRWFAPLANGLI  307 (662)
T ss_dssp             EEEEEEETTBCEEEEEECTTS----CEEEEECTTSSCEEEEECTTTCCEE-ESSCCSSBSSCCCCSTTCCSEEECTTSCE
T ss_pred             cEEeCCCCCceEcceEECCCC----eEEEEECCCCCeEEEEEECCCCcee-ecccccccccCccccccCceEeEeCCCEE
Confidence            111223457789999999996    5788888888555555432111111 1111111   11     457899999999


Q ss_pred             EEEecCCceEEeeecC-CceEE
Q 022111          273 LAVADANNVTLWKEAV-DGEWQ  293 (302)
Q Consensus       273 la~~~~d~i~~w~~~~-~~~~~  293 (302)
                      ++++....++||.... .+...
T Consensus       308 ~~~~~~~~~~l~~~d~~~~~~~  329 (662)
T 3azo_A          308 AVVHGKGAAVLGILDPESGELV  329 (662)
T ss_dssp             EEEEBSSSCEEEEEETTTTEEE
T ss_pred             EEEEEcCccEEEEEECCCCcEE
Confidence            9888765588886543 24443

>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}

Probab=99.63  E-value=4.2e-13  Score=114.13  Aligned_cols=241  Identities=13%  Similarity=0.022  Sum_probs=154.7

Q ss_pred             ccccceeEEEEccCCC-EEEEeeCCCcEEEEeecCCCceEEEEecCcccCeEEEEeeCCCCCCEEEEEeCCCeEEEEEcC
Q 022111            9 GHEDTVHDVAMDFYGK-RLATASSDSSIKIIGLSNSASQHLATLKGHRGPVWQVAWAHPKFGSILASCSYDGQVIIWKEG   87 (302)
Q Consensus         9 ~h~~~v~~~~~s~~~~-~l~s~~~d~~v~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~s~D~~i~iwd~~   87 (302)
                      .+.....+++|+++++ .++++..++.|++|+....    ...+..+...+.+++++++  |+++++...++.|.+||..
T Consensus        25 ~~~~~~eg~~~d~~g~~l~~~~~~~~~i~~~~~~~~----~~~~~~~~~~~~~l~~~~d--g~l~v~~~~~~~i~~~d~~   98 (296)
T 3e5z_A           25 DGFTWTEGPVYVPARSAVIFSDVRQNRTWAWSDDGQ----LSPEMHPSHHQNGHCLNKQ--GHLIACSHGLRRLERQREP   98 (296)
T ss_dssp             CCCSSEEEEEEEGGGTEEEEEEGGGTEEEEEETTSC----EEEEESSCSSEEEEEECTT--CCEEEEETTTTEEEEECST
T ss_pred             cCCccccCCeEeCCCCEEEEEeCCCCEEEEEECCCC----eEEEECCCCCcceeeECCC--CcEEEEecCCCeEEEEcCC
Confidence            3445667899999998 7778888999999998653    3445556777899999763  7888777778899999986


Q ss_pred             CCCceeEEE-EecC-CCCCeeEEEecCCCCCcEEEE----EecC-----------CcEEEEEecCCCCeeeeeecccCCC
Q 022111           88 NQNDWTQAH-TFND-HKSSVNSIAWAPHELGLSLAC----GSSD-----------GNISVFTATADGGWDTTRIDQAHPV  150 (302)
Q Consensus        88 ~~~~~~~~~-~~~~-h~~~i~~l~~~pd~~~~~l~s----g~~d-----------~~v~~~~~~~~~~~~~~~~~~~h~~  150 (302)
                      ++.. .... .... ....+..+++.|+  |.++++    |..+           +.-.||.+...+...  .+. .+..
T Consensus        99 ~g~~-~~~~~~~~~~~~~~~~~i~~d~~--G~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~g~~~--~~~-~~~~  172 (296)
T 3e5z_A           99 GGEW-ESIADSFEGKKLNSPNDVCLAPD--GSLWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPDGTLS--API-RDRV  172 (296)
T ss_dssp             TCCE-EEEECEETTEECCCCCCEEECTT--SCEEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTTSCEE--EEE-CCCS
T ss_pred             CCcE-EEEeeccCCCCCCCCCCEEECCC--CCEEEECCccccccccccccccccCCCcEEEEECCCCCEE--Eee-cCCC
Confidence            5432 1111 1111 1235678999987  667776    3311           122455554333322  221 3444


Q ss_pred             CeEEEEeCCCCCCCceeecccCCCceeEEEeeCCCcEEEEEEe-cCccccccccccccCCCceeEEEeeCCCCCCccEEE
Q 022111          151 GVTSVSWAPAMAPGALVGLGLLDPVQKLASCGCDNTVKVWKMY-NGIWKMDCFPALQMHSDWVRSVAWAPNLGLPKSTIA  229 (302)
Q Consensus       151 ~v~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~D~~v~iwd~~-~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~l~  229 (302)
                      ....++|+|++              +.|++.+.++.|++||+. ++... .....+..+...+.+++++|++    +..+
T Consensus       173 ~~~gi~~s~dg--------------~~lv~~~~~~~i~~~~~~~~g~~~-~~~~~~~~~~~~p~~i~~d~~G----~l~v  233 (296)
T 3e5z_A          173 KPNGLAFLPSG--------------NLLVSDTGDNATHRYCLNARGETE-YQGVHFTVEPGKTDGLRVDAGG----LIWA  233 (296)
T ss_dssp             SEEEEEECTTS--------------CEEEEETTTTEEEEEEECSSSCEE-EEEEEECCSSSCCCSEEEBTTS----CEEE
T ss_pred             CCccEEECCCC--------------CEEEEeCCCCeEEEEEECCCCcCc-CCCeEeeCCCCCCCeEEECCCC----CEEE
Confidence            56788998864              566778888999999996 33210 0011222345567789999985    5555


Q ss_pred             EEecCCeEEEEEeccCCcceeeeeeccCCCcEEEEEE-ccCCCEEEEecCCceEEeeec
Q 022111          230 SASQDGTVVIWTCAKEGEQWEGRVLKDFKTPVWSVSW-SLTGNLLAVADANNVTLWKEA  287 (302)
Q Consensus       230 s~s~D~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~-spdg~~la~~~~d~i~~w~~~  287 (302)
                      +.  ++.|.+||.+..   .... ...... +.+++| +|+++.|.+++.+++..++..
T Consensus       234 ~~--~~~v~~~~~~g~---~~~~-~~~~~~-~~~~~f~~~d~~~L~v~t~~~l~~~~~~  285 (296)
T 3e5z_A          234 SA--GDGVHVLTPDGD---ELGR-VLTPQT-TSNLCFGGPEGRTLYMTVSTEFWSIETN  285 (296)
T ss_dssp             EE--TTEEEEECTTSC---EEEE-EECSSC-CCEEEEESTTSCEEEEEETTEEEEEECS
T ss_pred             Ec--CCeEEEECCCCC---EEEE-EECCCC-ceeEEEECCCCCEEEEEcCCeEEEEEcc
Confidence            55  889999997521   1112 222333 888999 589998888877776666654

>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...

Probab=99.61  E-value=1.8e-13  Score=131.21  Aligned_cols=244  Identities=15%  Similarity=0.208  Sum_probs=145.6

Q ss_pred             eEEEEccCCCEEEEeeCC---------CcEEEEeecCCCceEEEEecCcccCeEEEEeeCCCCCCEEEEEeCCCeEEEEE
Q 022111           15 HDVAMDFYGKRLATASSD---------SSIKIIGLSNSASQHLATLKGHRGPVWQVAWAHPKFGSILASCSYDGQVIIWK   85 (302)
Q Consensus        15 ~~~~~s~~~~~l~s~~~d---------~~v~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~s~D~~i~iwd   85 (302)
                      .++.|||||++|+.++.+         +.+.+||+.++.   ...+..|.+.+...+|+|+  |+.||.++ |+.|.+|+
T Consensus        65 ~~~~~Spdg~~l~~~~~~~~~~r~~~~~~~~~~d~~~~~---~~~l~~~~~~~~~~~~SPd--G~~la~~~-~~~i~~~~  138 (740)
T 4a5s_A           65 NDYSISPDGQFILLEYNYVKQWRHSYTASYDIYDLNKRQ---LITEERIPNNTQWVTWSPV--GHKLAYVW-NNDIYVKI  138 (740)
T ss_dssp             CEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTTE---ECCSSCCCTTEEEEEECSS--TTCEEEEE-TTEEEEES
T ss_pred             cceEECCCCCEEEEEECCeeeEEEccceEEEEEECCCCc---EEEcccCCCcceeeEECCC--CCEEEEEE-CCeEEEEE
Confidence            447889999999998876         456699987642   3356678888999999975  88998874 68999999


Q ss_pred             cCCCCceeEEEEecCCCCCe-----------------eEEEecCCCCCcEEEEEecCC----------------------
Q 022111           86 EGNQNDWTQAHTFNDHKSSV-----------------NSIAWAPHELGLSLACGSSDG----------------------  126 (302)
Q Consensus        86 ~~~~~~~~~~~~~~~h~~~i-----------------~~l~~~pd~~~~~l~sg~~d~----------------------  126 (302)
                      ..++... . -+..++...+                 ..+.||||  |+.||.++.|.                      
T Consensus       139 ~~~~~~~-~-lt~~g~~~~~~~g~~~~v~~ee~~~~~~~~~wSpD--g~~la~~~~d~~~v~~~~~~~~~~~~~~~~~~~  214 (740)
T 4a5s_A          139 EPNLPSY-R-ITWTGKEDIIYNGITDWVYEEEVFSAYSALWWSPN--GTFLAYAQFNDTEVPLIEYSFYSDESLQYPKTV  214 (740)
T ss_dssp             STTSCCE-E-CCSCCBTTTEEESBCCHHHHHHTSSSSBCEEECTT--SSEEEEEEEECTTCCEEEEEECCSTTCSSCEEE
T ss_pred             CCCCceE-E-EcCCCCccceecCcccccccchhcCCCcceEECCC--CCEEEEEEEcccCCceEEEEeecCCCCCCCcce
Confidence            8765321 1 1222332222                 45899999  77888876443                      


Q ss_pred             --------------cEEEEEecC---CCCeeeeeecc-----cCCCCeEEEEeCCCCCCCceeecccCCCceeEEEe---
Q 022111          127 --------------NISVFTATA---DGGWDTTRIDQ-----AHPVGVTSVSWAPAMAPGALVGLGLLDPVQKLASC---  181 (302)
Q Consensus       127 --------------~v~~~~~~~---~~~~~~~~~~~-----~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~s~---  181 (302)
                                    .+.+||+..   ........+..     .|...+..++|+|++              +.++..   
T Consensus       215 ~~~yp~~G~~~~~~~l~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~wspdg--------------~~~~~~~~r  280 (740)
T 4a5s_A          215 RVPYPKAGAVNPTVKFFVVNTDSLSSVTNATSIQITAPASMLIGDHYLCDVTWATQE--------------RISLQWLRR  280 (740)
T ss_dssp             EEECCBTTSCCCEEEEEEEETTSCCSSSCCCEEEECCCHHHHTSCEEEEEEEEEETT--------------EEEEEEEES
T ss_pred             eecCCCCcCcCCeeEEEEEECCCCCCCCcceEEEecCCccCCCCCeEEEEEEEeCCC--------------eEEEEEeCC
Confidence                          245555543   21101112211     245557788888864              544443   


Q ss_pred             -eCCCcEEEEEEecCccccccc--ccc--ccCCCcee-----EEEeeCCCCCCccEEE-EEe-cCC--eEEEEEeccCCc
Q 022111          182 -GCDNTVKVWKMYNGIWKMDCF--PAL--QMHSDWVR-----SVAWAPNLGLPKSTIA-SAS-QDG--TVVIWTCAKEGE  247 (302)
Q Consensus       182 -~~D~~v~iwd~~~~~~~~~~~--~~~--~~h~~~v~-----~v~~~p~~~~~~~~l~-s~s-~D~--~i~iwd~~~~~~  247 (302)
                       +.+..|++||+.++.....|.  ..+  .+|..+|.     +..|+||+    +.|+ ..+ .+|  .|.+||......
T Consensus       281 ~~~~~~i~~~d~~tg~~~~~~~~~~~l~~~~~~~~v~~~~~~~p~fspDG----~~l~~~~s~~~G~~~l~~~~~~~~~~  356 (740)
T 4a5s_A          281 IQNYSVMDICDYDESSGRWNCLVARQHIEMSTTGWVGRFRPSEPHFTLDG----NSFYKIISNEEGYRHICYFQIDKKDC  356 (740)
T ss_dssp             STTEEEEEEEEEETTTTEEEECGGGCEEEECSSSCSSSSSCCCCEECTTS----SEEEEEEECTTSCEEEEEEETTCSSC
T ss_pred             CCCEEEEEEEECCCCccccceeEEEEeeeccCCceEccCcCCCceEcCCC----CEEEEEEEcCCCceEEEEEECCCCce
Confidence             234479999998864100011  122  45777776     78999996    5555 555 444  467777654321


Q ss_pred             ceeeeeeccCCCcEEEEEEccCCCEEE-EecC--C---ceEEeeecCCce
Q 022111          248 QWEGRVLKDFKTPVWSVSWSLTGNLLA-VADA--N---NVTLWKEAVDGE  291 (302)
Q Consensus       248 ~~~~~~~~~~~~~v~~~~~spdg~~la-~~~~--d---~i~~w~~~~~~~  291 (302)
                          ..+......+..+.+ +|++.|+ ++..  +   ..+||.+..++.
T Consensus       357 ----~~lT~g~~~v~~~~~-~d~~~i~f~~~~~~~~~~~~~ly~v~~~g~  401 (740)
T 4a5s_A          357 ----TFITKGTWEVIGIEA-LTSDYLYYISNEYKGMPGGRNLYKIQLIDY  401 (740)
T ss_dssp             ----EESCCSSSCEEEEEE-ECSSEEEEEESCGGGCTTCBEEEEEETTEE
T ss_pred             ----EecccCCEEEEEEEE-EeCCEEEEEEecCCCCCceeEEEEEECCCC
Confidence                122222334544432 4465554 4443  1   467887765543

>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*

Probab=99.60  E-value=1.7e-12  Score=123.89  Aligned_cols=252  Identities=11%  Similarity=-0.006  Sum_probs=152.2

Q ss_pred             cccccceeEEEEccCCCEEEEeeCCC-----cEEEEeecCCCceEEEEecCcccCeEEEEeeCCCCCCEEEEEeCCCe--
Q 022111            8 TGHEDTVHDVAMDFYGKRLATASSDS-----SIKIIGLSNSASQHLATLKGHRGPVWQVAWAHPKFGSILASCSYDGQ--   80 (302)
Q Consensus         8 ~~h~~~v~~~~~s~~~~~l~s~~~d~-----~v~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~s~D~~--   80 (302)
                      .+|...+..++|||||++||.+..++     +|++||+.++.  ...... ....+..++|+++  |+.|+.++.++.  
T Consensus       121 ~~~~~~~~~~~~SPDg~~la~~~~~~G~~~~~i~v~d~~tg~--~~~~~~-~~~~~~~~~wspD--g~~l~~~~~~~~~~  195 (710)
T 2xdw_A          121 DDGTVALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAK--ELPDVL-ERVKFSCMAWTHD--GKGMFYNAYPQQDG  195 (710)
T ss_dssp             TTSCEEEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTE--EEEEEE-EEECSCCEEECTT--SSEEEEEECCCCSS
T ss_pred             cCCCEEEEEEEECCCCCEEEEEEcCCCCceEEEEEEECCCCC--CCcccc-cCcccceEEEEeC--CCEEEEEEECCccc
Confidence            34555788999999999998766543     89999987643  222111 2223667999874  888888888766  


Q ss_pred             --------------EEEEEcCCCCce-eEEEEecCCCCCeeEEEecCCCCCcEEEEEec-----CCcEEEEEecCC----
Q 022111           81 --------------VIIWKEGNQNDW-TQAHTFNDHKSSVNSIAWAPHELGLSLACGSS-----DGNISVFTATAD----  136 (302)
Q Consensus        81 --------------i~iwd~~~~~~~-~~~~~~~~h~~~i~~l~~~pd~~~~~l~sg~~-----d~~v~~~~~~~~----  136 (302)
                                    |.+|++.+.... ..+.....|...+..+.|+||  |.+|+..+.     +..|.+||+...    
T Consensus       196 ~~~~~~~~~~~~~~v~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~SpD--g~~l~~~~~~~~~~~~~l~~~d~~~~~~~~  273 (710)
T 2xdw_A          196 KSDGTETSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSDD--GRYVLLSIREGCDPVNRLWYCDLQQESNGI  273 (710)
T ss_dssp             CCSSSCCCCCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTT--SCEEEEEEECSSSSCCEEEEEEGGGSSSSS
T ss_pred             cccccccccCCCCEEEEEECCCCcccceEEeccCCCCeEEEEEEEcCC--CCEEEEEEEccCCCccEEEEEECccccccc
Confidence                          999998664321 122233335566789999998  667776654     568889988641    


Q ss_pred             -CCeeeeeecccCCCCeEEEEeCCCCCCCceeecccCCCceeEEEeeCC---CcEEEEEEecCccccccccccccCCC--
Q 022111          137 -GGWDTTRIDQAHPVGVTSVSWAPAMAPGALVGLGLLDPVQKLASCGCD---NTVKVWKMYNGIWKMDCFPALQMHSD--  210 (302)
Q Consensus       137 -~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~D---~~v~iwd~~~~~~~~~~~~~~~~h~~--  210 (302)
                       +......+. .+...+.. .|+|++             ..+++.+..+   ..|.+||+.++..  .....+..|..  
T Consensus       274 ~~~~~~~~l~-~~~~~~~~-~~s~dg-------------~~l~~~s~~~~~~~~l~~~d~~~~~~--~~~~~l~~~~~~~  336 (710)
T 2xdw_A          274 TGILKWVKLI-DNFEGEYD-YVTNEG-------------TVFTFKTNRHSPNYRLINIDFTDPEE--SKWKVLVPEHEKD  336 (710)
T ss_dssp             CSSCCCEEEE-CSSSSCEE-EEEEET-------------TEEEEEECTTCTTCEEEEEETTSCCG--GGCEEEECCCSSC
T ss_pred             CCccceEEee-CCCCcEEE-EEeccC-------------CEEEEEECCCCCCCEEEEEeCCCCCc--ccceeccCCCCCC
Confidence             111112222 33333333 365543             2333333332   3588888866421  11233444543  


Q ss_pred             ceeEEEeeCCCCCCccEEEEEecCCeEEEEEeccCCcceeeeeeccCCCcEEEEEEccCCCEEEEe-cC---C-ceEEee
Q 022111          211 WVRSVAWAPNLGLPKSTIASASQDGTVVIWTCAKEGEQWEGRVLKDFKTPVWSVSWSLTGNLLAVA-DA---N-NVTLWK  285 (302)
Q Consensus       211 ~v~~v~~~p~~~~~~~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~la~~-~~---d-~i~~w~  285 (302)
                      .+.+++|++++    ..+++...|+..+||-++....... ..+......+.+++++|+++.|+.. ++   . .+.+|+
T Consensus       337 ~~~~~~~~~~~----~lv~~~~~~g~~~l~~~~~~~g~~~-~~l~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d  411 (710)
T 2xdw_A          337 VLEWVACVRSN----FLVLCYLHDVKNTLQLHDLATGALL-KIFPLEVGSVVGYSGQKKDTEIFYQFTSFLSPGIIYHCD  411 (710)
T ss_dssp             EEEEEEEETTT----EEEEEEEETTEEEEEEEETTTCCEE-EEECCCSSEEEEEECCTTCSEEEEEEECSSCCCEEEEEE
T ss_pred             eEEEEEEEcCC----EEEEEEEECCEEEEEEEECCCCCEE-EecCCCCceEEEEecCCCCCEEEEEEeCCCCCCEEEEEE
Confidence            68889999653    6788899999655554432111111 1223335668899999999766544 22   1 588888


Q ss_pred             ecC
Q 022111          286 EAV  288 (302)
Q Consensus       286 ~~~  288 (302)
                      ...
T Consensus       412 ~~t  414 (710)
T 2xdw_A          412 LTK  414 (710)
T ss_dssp             TTS
T ss_pred             CCC
Confidence            754

>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*

Probab=99.60  E-value=6.7e-14  Score=121.10  Aligned_cols=210  Identities=8%  Similarity=-0.021  Sum_probs=127.1

Q ss_pred             ceeEEEEccCCCEEE-EeeCCCcEEEEeecCCCceEEEEec-Cc-----ccCeEEEEeeCCCCCCEEEEEeCC-------
Q 022111           13 TVHDVAMDFYGKRLA-TASSDSSIKIIGLSNSASQHLATLK-GH-----RGPVWQVAWAHPKFGSILASCSYD-------   78 (302)
Q Consensus        13 ~v~~~~~s~~~~~l~-s~~~d~~v~lw~~~~~~~~~~~~~~-~h-----~~~v~~v~~~~~~~~~~l~s~s~D-------   78 (302)
                      .+..++|+|++++++ ++..++.|.+||+...  +.+..+. .+     ...+..++|+++  |++|++++.+       
T Consensus        44 ~~~~~~~s~dg~~~~v~~~~~~~i~~~d~~t~--~~~~~~~~~~~~~~~~~~~~~~~~spd--g~~l~~~~~~~~~~~~~  119 (349)
T 1jmx_B           44 GPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTC--KNTFHANLSSVPGEVGRSMYSFAISPD--GKEVYATVNPTQRLNDH  119 (349)
T ss_dssp             SSCEEEECTTSSEEEEEETTTTEEEEEETTTT--EEEEEEESCCSTTEEEECSSCEEECTT--SSEEEEEEEEEEECSSC
T ss_pred             CCceeEECCCCCEEEEEeCCCCcEEEEeCCCC--cEEEEEEcccccccccccccceEECCC--CCEEEEEcccccccccc
Confidence            567889999998654 5557899999998653  3344443 22     234778999864  8888888865       


Q ss_pred             -----CeEEEEEcCCCCceeEEEEecCCCCCeeEEEecCCCCCcEEEEEecCCcEEEEEecCCCCeeeeeecccC---C-
Q 022111           79 -----GQVIIWKEGNQNDWTQAHTFNDHKSSVNSIAWAPHELGLSLACGSSDGNISVFTATADGGWDTTRIDQAH---P-  149 (302)
Q Consensus        79 -----~~i~iwd~~~~~~~~~~~~~~~h~~~i~~l~~~pd~~~~~l~sg~~d~~v~~~~~~~~~~~~~~~~~~~h---~-  149 (302)
                           +.|.+||+.++........+. +...+.+++|+|+  +. ++.++  +.|.+||..+.....  .+....   . 
T Consensus       120 ~~~~~~~i~~~d~~~~~~~~~~~~~~-~~~~~~~~~~s~d--g~-l~~~~--~~i~~~d~~~~~~~~--~~~~~~~~~~~  191 (349)
T 1jmx_B          120 YVVKPPRLEVFSTADGLEAKPVRTFP-MPRQVYLMRAADD--GS-LYVAG--PDIYKMDVKTGKYTV--ALPLRNWNRKG  191 (349)
T ss_dssp             EEECCCEEEEEEGGGGGGBCCSEEEE-CCSSCCCEEECTT--SC-EEEES--SSEEEECTTTCCEEE--EECSTTCCCTT
T ss_pred             cccCCCeEEEEECCCccccceeeecc-CCCcccceeECCC--Cc-EEEcc--CcEEEEeCCCCceec--cccccccCCcc
Confidence                 899999987643222233333 3346889999998  55 44443  349999876432211  111110   0 


Q ss_pred             ---------------C----CeEEEEeCCCCCC------------------------------CceeecccCC-CceeEE
Q 022111          150 ---------------V----GVTSVSWAPAMAP------------------------------GALVGLGLLD-PVQKLA  179 (302)
Q Consensus       150 ---------------~----~v~~~~~~~~~~~------------------------------~~~~~~~~~~-~~~~l~  179 (302)
                                     .    ....+.++++...                              .....+...+ ++++++
T Consensus       192 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~dg~~l~  271 (349)
T 1jmx_B          192 YSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSVDLKTGKTHTQEFADLTELYFTGLRSPKDPNQIY  271 (349)
T ss_dssp             BCCCBCCCCCCCCCTTCEEEEEEEEEEC-------CCCEEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECSSCTTEEE
T ss_pred             ccCccceeeecCCCcceeEEeeeeeeecCCCcCCccccccceeEEEEeccCCcEEecccccCCCcceeeEecCCCCCEEE
Confidence                           0    1122333321100                              0011122234 566777


Q ss_pred             EeeCCCcEEEEEEecCccccccccccccCCCceeEEEeeCCCCCCccEEEEEecCCeEEEEEeccC
Q 022111          180 SCGCDNTVKVWKMYNGIWKMDCFPALQMHSDWVRSVAWAPNLGLPKSTIASASQDGTVVIWTCAKE  245 (302)
Q Consensus       180 s~~~D~~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~l~s~s~D~~i~iwd~~~~  245 (302)
                      ++  ++.|.+||+.++.    ....+. ....+.+++|+|++    +.|++++.++.|++||+.+.
T Consensus       272 ~~--~~~v~~~d~~~~~----~~~~~~-~~~~~~~~~~s~dg----~~l~~~~~~~~v~v~d~~~~  326 (349)
T 1jmx_B          272 GV--LNRLAKYDLKQRK----LIKAAN-LDHTYYCVAFDKKG----DKLYLGGTFNDLAVFNPDTL  326 (349)
T ss_dssp             EE--ESEEEEEETTTTE----EEEEEE-CSSCCCEEEECSSS----SCEEEESBSSEEEEEETTTT
T ss_pred             EE--cCeEEEEECccCe----EEEEEc-CCCCccceEECCCC----CEEEEecCCCeEEEEecccc
Confidence            66  8899999987753    222222 23347799999996    55777888999999998653

>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}

Probab=99.58  E-value=3.8e-12  Score=110.35  Aligned_cols=228  Identities=12%  Similarity=0.155  Sum_probs=140.4

Q ss_pred             ceeEEEEccCCCEEEEeeCC---Cc--EEEEeecCCCceEEEEecCcccCeEEEEeeCCCCCCEEEEEeCC---------
Q 022111           13 TVHDVAMDFYGKRLATASSD---SS--IKIIGLSNSASQHLATLKGHRGPVWQVAWAHPKFGSILASCSYD---------   78 (302)
Q Consensus        13 ~v~~~~~s~~~~~l~s~~~d---~~--v~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~s~D---------   78 (302)
                      .+..++|+|||++||..+.+   +.  |.+|++..+  +.. .+..+.. +..++|+|+  |+.|+.++.+         
T Consensus        60 ~~~~~~~SpDg~~la~~~~~~~~~~~~l~~~~~~~g--~~~-~l~~~~~-~~~~~wspd--g~~l~~~~~~~~~~~~~~~  133 (347)
T 2gop_A           60 NATMPRISPDGKKIAFMRANEEKKVSEIWVADLETL--SSK-KILEAKN-IRSLEWNED--SRKLLIVGFKRREDEDFIF  133 (347)
T ss_dssp             SCEEEEECTTSSEEEEEEEETTTTEEEEEEEETTTT--EEE-EEEEESE-EEEEEECTT--SSEEEEEEECCCC------
T ss_pred             cCCCeEECCCCCEEEEEEeccCCCcceEEEEECCCC--ceE-EEEcCCC-ccceeECCC--CCEEEEEEccCCCcCCcEE
Confidence            46678999999999887754   34  555565442  322 2323334 889999874  7888777643         


Q ss_pred             ------------------CeEEEEEcCCCCceeEEEEecCCCCCeeEEEecCCCCCcEEEEEecCC-------cEEEEEe
Q 022111           79 ------------------GQVIIWKEGNQNDWTQAHTFNDHKSSVNSIAWAPHELGLSLACGSSDG-------NISVFTA  133 (302)
Q Consensus        79 ------------------~~i~iwd~~~~~~~~~~~~~~~h~~~i~~l~~~pd~~~~~l~sg~~d~-------~v~~~~~  133 (302)
                                        ..|.+||+.++.   ....+.. . .+..++|+||  | +++++..+.       ...||.+
T Consensus       134 ~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~---~~~~l~~-~-~~~~~~~spd--g-~~~~~~~~~~~~~~~~~~~l~~~  205 (347)
T 2gop_A          134 EDDVPAWFDDLGFFDGEKTTFWIFDTESEE---VIEEFEK-P-RFSSGIWHRD--K-IVVNVPHREIIPQYFKFWDIYIW  205 (347)
T ss_dssp             ---CCCC---------CEEEEEEEETTTTE---EEEEEEE-E-TTCEEEEETT--E-EEEEEECCCSSCCSSCCEEEEEE
T ss_pred             EcccceeecCcccccCccceEEEEECCCCe---EEeeecC-C-CcccccCCCC--e-EEEEEecccccccccccccEEEe
Confidence                              568888886642   2133333 3 7889999998  6 666665542       4566655


Q ss_pred             cCCCCeeeeeecccCCCCeEEEEeCCCCCCCceeecccCCCceeEEEeeCC--------CcEEEEEEecCcccccccccc
Q 022111          134 TADGGWDTTRIDQAHPVGVTSVSWAPAMAPGALVGLGLLDPVQKLASCGCD--------NTVKVWKMYNGIWKMDCFPAL  205 (302)
Q Consensus       134 ~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~D--------~~v~iwd~~~~~~~~~~~~~~  205 (302)
                      . .+..  ..+. .+ ..+..+  +|+              ++.|+.++.+        ..|.+||  ++.    .....
T Consensus       206 d-~~~~--~~l~-~~-~~~~~~--spd--------------g~~l~~~~~~~~~~~~~~~~l~~~d--~~~----~~~l~  258 (347)
T 2gop_A          206 E-DGKE--EKMF-EK-VSFYAV--DSD--------------GERILLYGKPEKKYMSEHNKLYIYD--GKE----VMGIL  258 (347)
T ss_dssp             E-TTEE--EEEE-EE-ESEEEE--EEC--------------SSCEEEEECCSSSCCCSSCEEEEEC--SSC----EEESS
T ss_pred             C-CCce--EEec-cC-cceeeE--CCC--------------CCEEEEEEccccCCccccceEEEEC--CCc----eEecc
Confidence            5 3322  2222 12 233333  554              4666666543        3577777  332    11223


Q ss_pred             ccCCCceeE-EEeeCCCCCCccEEEEEecCCeEEEEEeccCCcceeeeeeccCCCcEEEEEEccCCCEEEEecCC-c-eE
Q 022111          206 QMHSDWVRS-VAWAPNLGLPKSTIASASQDGTVVIWTCAKEGEQWEGRVLKDFKTPVWSVSWSLTGNLLAVADAN-N-VT  282 (302)
Q Consensus       206 ~~h~~~v~~-v~~~p~~~~~~~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~la~~~~d-~-i~  282 (302)
                      .+|...+.. +.|+ +    + .+++++.++.++|| +. .+..  ..+ ......|.+++|+|  .++++++++ . ..
T Consensus       259 ~~~~~~~~~~~~~s-d----g-~~~~~~~~~~~~l~-~~-~g~~--~~~-~~~~~~v~~~~~s~--~~~~~~~~~~~~~~  325 (347)
T 2gop_A          259 DEVDRGVGQAKIKD-G----K-VYFTLFEEGSVNLY-IW-DGEI--KPI-AKGRHWIMGFDVDE--IVVYLKETATRLRE  325 (347)
T ss_dssp             TTCCSEEEEEEEET-T----E-EEEEEEETTEEEEE-EE-SSSE--EEE-ECSSSEEEEEEESS--SEEEEEECSSSCCE
T ss_pred             ccCCcccCCccEEc-C----c-EEEEEecCCcEEEE-Ec-CCce--EEE-ecCCCeEEeeeeeC--cEEEEEcCCCChHH
Confidence            456777886 8998 6    4 78899999999999 87 3221  122 23356799999999  566666555 4 47


Q ss_pred             EeeecCCceEEEee
Q 022111          283 LWKEAVDGEWQQVS  296 (302)
Q Consensus       283 ~w~~~~~~~~~~~~  296 (302)
                      ||...  |...++.
T Consensus       326 l~~~~--g~~~~lt  337 (347)
T 2gop_A          326 LFTWD--GEEKQLT  337 (347)
T ss_dssp             EEEES--SSEEECC
T ss_pred             heEeC--CcEEEec
Confidence            88765  5554443

>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A

Probab=99.56  E-value=2.2e-11  Score=105.06  Aligned_cols=240  Identities=10%  Similarity=0.025  Sum_probs=146.7

Q ss_pred             ccccceeEEEEccCCCEEEEeeCCCcEEEEeecCCCceEEEEecCcccCeEEEEeeCCCCCCEEEEEeCC----CeEEEE
Q 022111            9 GHEDTVHDVAMDFYGKRLATASSDSSIKIIGLSNSASQHLATLKGHRGPVWQVAWAHPKFGSILASCSYD----GQVIIW   84 (302)
Q Consensus         9 ~h~~~v~~~~~s~~~~~l~s~~~d~~v~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~s~D----~~i~iw   84 (302)
                      ++...+.+++|++++++++++..++.|++|+........  ....+...+.+++++++  ++++++...+    +.|.+|
T Consensus        42 ~~~~~~~~~~~~~~g~l~~~~~~~~~i~~~d~~~~~~~~--~~~~~~~~~~~i~~~~d--g~l~v~~~~~~~~~~~i~~~  117 (333)
T 2dg1_A           42 KKGLQLEGLNFDRQGQLFLLDVFEGNIFKINPETKEIKR--PFVSHKANPAAIKIHKD--GRLFVCYLGDFKSTGGIFAA  117 (333)
T ss_dssp             SSCCCEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEE--EEECSSSSEEEEEECTT--SCEEEEECTTSSSCCEEEEE
T ss_pred             ccCccccCcEECCCCCEEEEECCCCEEEEEeCCCCcEEE--EeeCCCCCcceEEECCC--CcEEEEeCCCCCCCceEEEE
Confidence            455567889999999988888889999999986543222  22245677999999754  7777777666    689999


Q ss_pred             EcCCCCceeEEEEecCCCCCeeEEEecCCCCCcEEEEEecC----CcEEEEEecCCC-CeeeeeecccCCCCeEEEEeCC
Q 022111           85 KEGNQNDWTQAHTFNDHKSSVNSIAWAPHELGLSLACGSSD----GNISVFTATADG-GWDTTRIDQAHPVGVTSVSWAP  159 (302)
Q Consensus        85 d~~~~~~~~~~~~~~~h~~~i~~l~~~pd~~~~~l~sg~~d----~~v~~~~~~~~~-~~~~~~~~~~h~~~v~~~~~~~  159 (302)
                      |..+... ........+...+.++++.|+  +.++++...+    ....||.+...+ ...  .+. .+......++|+|
T Consensus       118 d~~~~~~-~~~~~~~~~~~~~~~i~~d~~--g~l~v~~~~~~~~~~~~~l~~~~~~~~~~~--~~~-~~~~~~~~i~~~~  191 (333)
T 2dg1_A          118 TENGDNL-QDIIEDLSTAYCIDDMVFDSK--GGFYFTDFRGYSTNPLGGVYYVSPDFRTVT--PII-QNISVANGIALST  191 (333)
T ss_dssp             CTTSCSC-EEEECSSSSCCCEEEEEECTT--SCEEEEECCCBTTBCCEEEEEECTTSCCEE--EEE-EEESSEEEEEECT
T ss_pred             eCCCCEE-EEEEccCccCCcccceEECCC--CCEEEEeccccccCCCceEEEEeCCCCEEE--Eee-cCCCcccceEECC
Confidence            9866432 111111124467899999997  5566654431    234555544322 222  111 1223467788887


Q ss_pred             CCCCCceeecccCCCceeEEEeeCCCcEEEEEEecCccccc-----cccccccCCCceeEEEeeCCCCCCccEEEEEecC
Q 022111          160 AMAPGALVGLGLLDPVQKLASCGCDNTVKVWKMYNGIWKMD-----CFPALQMHSDWVRSVAWAPNLGLPKSTIASASQD  234 (302)
Q Consensus       160 ~~~~~~~~~~~~~~~~~~l~s~~~D~~v~iwd~~~~~~~~~-----~~~~~~~h~~~v~~v~~~p~~~~~~~~l~s~s~D  234 (302)
                      ++             ..++++.+.++.|.+||+.+....+.     ....+.++ ..+..+++++++    +.+++...+
T Consensus       192 dg-------------~~l~v~~~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~-~~~~~i~~d~~G----~l~v~~~~~  253 (333)
T 2dg1_A          192 DE-------------KVLWVTETTANRLHRIALEDDGVTIQPFGATIPYYFTGH-EGPDSCCIDSDD----NLYVAMYGQ  253 (333)
T ss_dssp             TS-------------SEEEEEEGGGTEEEEEEECTTSSSEEEEEEEEEEECCSS-SEEEEEEEBTTC----CEEEEEETT
T ss_pred             CC-------------CEEEEEeCCCCeEEEEEecCCCcCcccccceEEEecCCC-CCCCceEECCCC----CEEEEEcCC
Confidence            63             12455666688999999963211111     01112223 467889999985    667777788


Q ss_pred             CeEEEEEeccCCcceeeeeecc-----CCCcEEEEEEccCCCEEEEecCC
Q 022111          235 GTVVIWTCAKEGEQWEGRVLKD-----FKTPVWSVSWSLTGNLLAVADAN  279 (302)
Q Consensus       235 ~~i~iwd~~~~~~~~~~~~~~~-----~~~~v~~~~~spdg~~la~~~~d  279 (302)
                      +.|.+||....  . ...+...     +...+.+++|+|||+.|.+++.+
T Consensus       254 ~~v~~~d~~g~--~-~~~~~~~~~~~g~~~~~~~~~~~~dg~~L~v~~~~  300 (333)
T 2dg1_A          254 GRVLVFNKRGY--P-IGQILIPGRDEGHMLRSTHPQFIPGTNQLIICSND  300 (333)
T ss_dssp             TEEEEECTTSC--E-EEEEECTTGGGTCSCBCCEEEECTTSCEEEEEEEC
T ss_pred             CEEEEECCCCC--E-EEEEEcCCCccccccCcceEEECCCCCEEEEEeCc
Confidence            99999987421  1 1122111     11157899999998777555443

>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}

Probab=99.56  E-value=1.4e-12  Score=124.27  Aligned_cols=255  Identities=10%  Similarity=-0.019  Sum_probs=154.3

Q ss_pred             cccccceeEEEEccCCCEEE-----EeeCCCcEEEEeecCCCceEEEEecCcccCeEEEEeeCCCCCCEEEEEeCCCe--
Q 022111            8 TGHEDTVHDVAMDFYGKRLA-----TASSDSSIKIIGLSNSASQHLATLKGHRGPVWQVAWAHPKFGSILASCSYDGQ--   80 (302)
Q Consensus         8 ~~h~~~v~~~~~s~~~~~l~-----s~~~d~~v~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~s~D~~--   80 (302)
                      .+|...+..++|||||++||     +|+.+.+|++||+.++.......+...  ....++|+++  |+.|+.++.|..  
T Consensus       117 ~~~~~~~~~~~~SPDG~~la~~~~~~G~~~~~i~v~dl~tg~~~~~~~~~~~--~~~~~~wspD--g~~l~~~~~d~~~~  192 (695)
T 2bkl_A          117 KDGTVSLGTWAVSWDGKKVAFAQKPNAADEAVLHVIDVDSGEWSKVDVIEGG--KYATPKWTPD--SKGFYYEWLPTDPS  192 (695)
T ss_dssp             SSSCEEEEEEEECTTSSEEEEEEEETTCSCCEEEEEETTTCCBCSSCCBSCC--TTCCCEECTT--SSEEEEEECCCCTT
T ss_pred             cCCCEEEEEEEECCCCCEEEEEECCCCCceEEEEEEECCCCCCcCCcccCcc--cccceEEecC--CCEEEEEEecCCCC
Confidence            35666789999999999998     566678999999976432101112211  1257899874  889999988876  


Q ss_pred             -----------EEEEEcCCCCc-eeEEEEecCCCCCeeEEEecCCCCCcEEEEEecCC--cEEEEEecC-CCCeeeeeec
Q 022111           81 -----------VIIWKEGNQND-WTQAHTFNDHKSSVNSIAWAPHELGLSLACGSSDG--NISVFTATA-DGGWDTTRID  145 (302)
Q Consensus        81 -----------i~iwd~~~~~~-~~~~~~~~~h~~~i~~l~~~pd~~~~~l~sg~~d~--~v~~~~~~~-~~~~~~~~~~  145 (302)
                                 |.+|++.+... ...+.....|...+..+.|+||  |.+|+..+.++  ...+|-+.. .+.+  ..+.
T Consensus       193 ~~~~~~~~~~~v~~~~l~t~~~~~~lv~~~~~~~~~~~~~~~SpD--G~~l~~~~~~~~~~~~l~~~~~~~~~~--~~l~  268 (695)
T 2bkl_A          193 IKVDERPGYTTIRYHTLGTEPSKDTVVHERTGDPTTFLQSDLSRD--GKYLFVYILRGWSENDVYWKRPGEKDF--RLLV  268 (695)
T ss_dssp             SCGGGGGGGCEEEEEETTSCGGGCEEEECCCCCTTCEEEEEECTT--SCCEEEEEEETTTEEEEEEECTTCSSC--EEEE
T ss_pred             CccccCCCCCEEEEEECCCCchhceEEEecCCCCEEEEEEEECCC--CCEEEEEEeCCCCceEEEEEcCCCCce--EEee
Confidence                       99999876532 1233334445567889999998  56676666554  344443332 2222  2222


Q ss_pred             ccCCCCeEEEEeCCCCCCCceeecccCCCceeEEEee---CCCcEEEEEEecCccccccccccccC--CCceeEEEeeCC
Q 022111          146 QAHPVGVTSVSWAPAMAPGALVGLGLLDPVQKLASCG---CDNTVKVWKMYNGIWKMDCFPALQMH--SDWVRSVAWAPN  220 (302)
Q Consensus       146 ~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~---~D~~v~iwd~~~~~~~~~~~~~~~~h--~~~v~~v~~~p~  220 (302)
                       .+...+....| ++              +.++++..   .++.|.+||+.++..  .....+..|  ...+.+++|+ +
T Consensus       269 -~~~~~~~~~~~-~~--------------g~l~~~s~~~~~~~~l~~~d~~~~~~--~~~~~l~~~~~~~~l~~~~~~-~  329 (695)
T 2bkl_A          269 -KGVGAKYEVHA-WK--------------DRFYVLTDEGAPRQRVFEVDPAKPAR--ASWKEIVPEDSSASLLSVSIV-G  329 (695)
T ss_dssp             -ECSSCCEEEEE-ET--------------TEEEEEECTTCTTCEEEEEBTTBCSG--GGCEEEECCCSSCEEEEEEEE-T
T ss_pred             -cCCCceEEEEe-cC--------------CcEEEEECCCCCCCEEEEEeCCCCCc--cCCeEEecCCCCCeEEEEEEE-C
Confidence             23334444445 33              24444443   357888999865421  001222223  4568888888 3


Q ss_pred             CCCCccEEEEEecCCeEEEEEeccCCcceeeeeeccCCCcEEEEEEccCCCEEEEecC----C-ceEEeeecCCceEEEe
Q 022111          221 LGLPKSTIASASQDGTVVIWTCAKEGEQWEGRVLKDFKTPVWSVSWSLTGNLLAVADA----N-NVTLWKEAVDGEWQQV  295 (302)
Q Consensus       221 ~~~~~~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~la~~~~----d-~i~~w~~~~~~~~~~~  295 (302)
                          +..+++...|+..+||.+...+.. ...+.......+.+++++|+++.|+....    . .|.+|+... +.....
T Consensus       330 ----~~lv~~~~~dg~~~l~~~~~~g~~-~~~l~~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~v~~~d~~~-g~~~~l  403 (695)
T 2bkl_A          330 ----GHLSLEYLKDATSEVRVATLKGKP-VRTVQLPGVGAASNLMGLEDLDDAYYVFTSFTTPRQIYKTSVST-GKSELW  403 (695)
T ss_dssp             ----TEEEEEEEETTEEEEEEEETTCCE-EEECCCSSSSEECCCBSCTTCSEEEEEEEETTEEEEEEEEETTT-CCEEEE
T ss_pred             ----CEEEEEEEECCEEEEEEEeCCCCe-eEEecCCCCeEEEEeecCCCCCEEEEEEcCCCCCCEEEEEECCC-CcEEEE
Confidence                368999999999999987632211 11121122456778899999987764422    2 588898753 334433

>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}

Probab=99.53  E-value=6.5e-14  Score=123.42  Aligned_cols=231  Identities=8%  Similarity=0.011  Sum_probs=136.9

Q ss_pred             EEEEccCCCEEEEeeCCCcEEEEeecCCCceEEEEecCcccCeEE---E----------------EeeCCCCCCEEEEE-
Q 022111           16 DVAMDFYGKRLATASSDSSIKIIGLSNSASQHLATLKGHRGPVWQ---V----------------AWAHPKFGSILASC-   75 (302)
Q Consensus        16 ~~~~s~~~~~l~s~~~d~~v~lw~~~~~~~~~~~~~~~h~~~v~~---v----------------~~~~~~~~~~l~s~-   75 (302)
                      .+.|+|||++|+.++.++.|++|++.......+..  .+......   +                .|++  +++.++.+ 
T Consensus        85 ~~~~spdg~~l~~~~~~~~l~~~d~~~~~~~~~~~--~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~sp--dg~~~~~~~  160 (396)
T 3c5m_A           85 GGFISTDERAFFYVKNELNLMKVDLETLEEQVIYT--VDEEWKGYGTWVANSDCTKLVGIEILKRDWQP--LTSWEKFAE  160 (396)
T ss_dssp             TCEECTTSSEEEEEETTTEEEEEETTTCCEEEEEE--CCTTEEEEEEEEECTTSSEEEEEEEEGGGCCC--CCSHHHHHH
T ss_pred             cceECCCCCEEEEEEcCCcEEEEECCCCCcEEEEe--cccccCCCCCEEEeccCCccccccccccccCC--CCcceeeee
Confidence            36799999999999999999999986544333322  22221111   2                2333  24544433 


Q ss_pred             ----eCCCeEEEEEcCCCCceeEEEEecCCCCCeeEEEecC-CCCCcEEEEEecC------CcEEEEEecCCCCeeeeee
Q 022111           76 ----SYDGQVIIWKEGNQNDWTQAHTFNDHKSSVNSIAWAP-HELGLSLACGSSD------GNISVFTATADGGWDTTRI  144 (302)
Q Consensus        76 ----s~D~~i~iwd~~~~~~~~~~~~~~~h~~~i~~l~~~p-d~~~~~l~sg~~d------~~v~~~~~~~~~~~~~~~~  144 (302)
                          ..+..|.+||+.++..    ..+..+...+..+.|+| +  +..|+..+.+      ..|.+|+..... .  ..+
T Consensus       161 ~~~~~~~~~l~~~d~~~g~~----~~~~~~~~~~~~~~~sp~d--g~~l~~~~~~~~~~~~~~l~~~d~~~~~-~--~~l  231 (396)
T 3c5m_A          161 FYHTNPTCRLIKVDIETGEL----EVIHQDTAWLGHPIYRPFD--DSTVGFCHEGPHDLVDARMWLVNEDGSN-V--RKI  231 (396)
T ss_dssp             HHHTCCCEEEEEEETTTCCE----EEEEEESSCEEEEEEETTE--EEEEEEEECSCSSSCSCCCEEEETTSCC-C--EES
T ss_pred             eccCCCcceEEEEECCCCcE----EeeccCCcccccceECCCC--CCEEEEEecCCCCCCCceEEEEECCCCc-e--eEe
Confidence                4566899999876532    22224567789999999 5  4556655543      356677654321 1  122


Q ss_pred             cccC-CCCeEEEEeCCCCCCCceeecccCCCceeEEEeeCC-----CcEEEEEEecCccccccccccccCCCceeEEEee
Q 022111          145 DQAH-PVGVTSVSWAPAMAPGALVGLGLLDPVQKLASCGCD-----NTVKVWKMYNGIWKMDCFPALQMHSDWVRSVAWA  218 (302)
Q Consensus       145 ~~~h-~~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~D-----~~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~~~  218 (302)
                      .... ...+..+.|+|++              +.|+..+.+     +.|++||+.++..  ..+..+.   . .. +.|+
T Consensus       232 ~~~~~~~~~~~~~~spdg--------------~~l~~~~~~~~~~~~~l~~~d~~~g~~--~~l~~~~---~-~~-~~~s  290 (396)
T 3c5m_A          232 KEHAEGESCTHEFWIPDG--------------SAMAYVSYFKGQTDRVIYKANPETLEN--EEVMVMP---P-CS-HLMS  290 (396)
T ss_dssp             SCCCTTEEEEEEEECTTS--------------SCEEEEEEETTTCCEEEEEECTTTCCE--EEEEECC---S-EE-EEEE
T ss_pred             eccCCCccccceEECCCC--------------CEEEEEecCCCCccceEEEEECCCCCe--EEeeeCC---C-CC-CCcc
Confidence            2111 2247778999864              555555443     4499999876532  1111121   1 23 8899


Q ss_pred             C-CCCCCccEEEEEe----------------cCCeEEEEEeccCCcceeeeeeccCCC-----------cEEEEEEccCC
Q 022111          219 P-NLGLPKSTIASAS----------------QDGTVVIWTCAKEGEQWEGRVLKDFKT-----------PVWSVSWSLTG  270 (302)
Q Consensus       219 p-~~~~~~~~l~s~s----------------~D~~i~iwd~~~~~~~~~~~~~~~~~~-----------~v~~~~~spdg  270 (302)
                      | ++    +.+++++                .+..|.+||+.....    ..+..+..           .+..++|+|||
T Consensus       291 ~~dg----~~l~~~~~~~p~~~~~~~~~~~~~~~~i~~~d~~~~~~----~~l~~~~~~~~~~~~~~~~~~~~~~~s~dg  362 (396)
T 3c5m_A          291 NFDG----SLMVGDGCDAPVDVADADSYNIENDPFLYVLNTKAKSA----QKLCKHSTSWDVLDGDRQITHPHPSFTPND  362 (396)
T ss_dssp             CSSS----SEEEEEECCC----------CCCCCCEEEEEETTTTBC----CEEEECCCCCCCBTTBSSTTCCCCEECTTS
T ss_pred             CCCC----ceEEEecCCcceeeccccccccCCCCcEEEEecccCce----EEccCCCCccccccccccCCCCCceEccCC
Confidence            9 85    5676654                347899999865321    11222222           24567899999


Q ss_pred             CEEEEecCC--ceEEeeecC
Q 022111          271 NLLAVADAN--NVTLWKEAV  288 (302)
Q Consensus       271 ~~la~~~~d--~i~~w~~~~  288 (302)
                      +.|+.++..  ...||.+..
T Consensus       363 ~~l~~~s~~~~~~~l~~~~~  382 (396)
T 3c5m_A          363 DGVLFTSDFEGVPAIYIADV  382 (396)
T ss_dssp             SEEEEEECTTSSCEEEEEEC
T ss_pred             CeEEEEecCCCCceEEEEEE
Confidence            998877653  567777643

>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A

Probab=99.53  E-value=3.4e-12  Score=110.19  Aligned_cols=241  Identities=11%  Similarity=0.099  Sum_probs=151.9

Q ss_pred             cceeEEEEccCCCEEEEeeCCCcEEEEeecCCCceEEEEecCcccCeEEEEeeCCCCCCEEEEEeCCCeEEEEEcCCCCc
Q 022111           12 DTVHDVAMDFYGKRLATASSDSSIKIIGLSNSASQHLATLKGHRGPVWQVAWAHPKFGSILASCSYDGQVIIWKEGNQND   91 (302)
Q Consensus        12 ~~v~~~~~s~~~~~l~s~~~d~~v~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~s~D~~i~iwd~~~~~~   91 (302)
                      ..|.+++|++++..+++.+.+++++.|.     ......+..+...+.+++|++  ++++++++..++.|.+||..++. 
T Consensus         6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~--~g~l~~~~~~~~~i~~~d~~~~~-   77 (333)
T 2dg1_A            6 QDLPTLFYSGKSNSAVPIISESELQTIT-----AEPWLEISKKGLQLEGLNFDR--QGQLFLLDVFEGNIFKINPETKE-   77 (333)
T ss_dssp             CCCCBCCSCGGGGCSSCCCCGGGSCEEE-----CEEEEEEESSCCCEEEEEECT--TSCEEEEETTTCEEEEECTTTCC-
T ss_pred             cccceeeecCCccceeEEeecccCcccc-----cceeEEEeccCccccCcEECC--CCCEEEEECCCCEEEEEeCCCCc-
Confidence            4577888999888787778889999992     234556666767788999975  37888888889999999986643 


Q ss_pred             eeEEEEecCCCCCeeEEEecCCCCCcEEEEEecC----CcEEEEEecCCCCeeeeeecccCCCCeEEEEeCCCCCCCcee
Q 022111           92 WTQAHTFNDHKSSVNSIAWAPHELGLSLACGSSD----GNISVFTATADGGWDTTRIDQAHPVGVTSVSWAPAMAPGALV  167 (302)
Q Consensus        92 ~~~~~~~~~h~~~i~~l~~~pd~~~~~l~sg~~d----~~v~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~  167 (302)
                        .......+...+.+++++|+  +.++++...+    +.|.+|+........... ...+...+..+.++|++      
T Consensus        78 --~~~~~~~~~~~~~~i~~~~d--g~l~v~~~~~~~~~~~i~~~d~~~~~~~~~~~-~~~~~~~~~~i~~d~~g------  146 (333)
T 2dg1_A           78 --IKRPFVSHKANPAAIKIHKD--GRLFVCYLGDFKSTGGIFAATENGDNLQDIIE-DLSTAYCIDDMVFDSKG------  146 (333)
T ss_dssp             --EEEEEECSSSSEEEEEECTT--SCEEEEECTTSSSCCEEEEECTTSCSCEEEEC-SSSSCCCEEEEEECTTS------
T ss_pred             --EEEEeeCCCCCcceEEECCC--CcEEEEeCCCCCCCceEEEEeCCCCEEEEEEc-cCccCCcccceEECCCC------
Confidence              11222245678999999988  5666666555    688888865332111111 11233457788887753      


Q ss_pred             ecccCCCceeEEEeeC----CCcEEEEEEecCccccccccccccCCCceeEEEeeCCCCCCcc-EEEEEecCCeEEEEEe
Q 022111          168 GLGLLDPVQKLASCGC----DNTVKVWKMYNGIWKMDCFPALQMHSDWVRSVAWAPNLGLPKS-TIASASQDGTVVIWTC  242 (302)
Q Consensus       168 ~~~~~~~~~~l~s~~~----D~~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~-~l~s~s~D~~i~iwd~  242 (302)
                              .++++...    +....||.+........   .+..+...+..++|+|++    + .+++.+.++.|.+||+
T Consensus       147 --------~l~v~~~~~~~~~~~~~l~~~~~~~~~~~---~~~~~~~~~~~i~~~~dg----~~l~v~~~~~~~i~~~d~  211 (333)
T 2dg1_A          147 --------GFYFTDFRGYSTNPLGGVYYVSPDFRTVT---PIIQNISVANGIALSTDE----KVLWVTETTANRLHRIAL  211 (333)
T ss_dssp             --------CEEEEECCCBTTBCCEEEEEECTTSCCEE---EEEEEESSEEEEEECTTS----SEEEEEEGGGTEEEEEEE
T ss_pred             --------CEEEEeccccccCCCceEEEEeCCCCEEE---EeecCCCcccceEECCCC----CEEEEEeCCCCeEEEEEe
Confidence                    45555443    12345555432111111   111223457899999985    4 4456667889999998


Q ss_pred             ccCCccee---eeeeccCC--CcEEEEEEccCCCEEEEecCC-ceEEeee
Q 022111          243 AKEGEQWE---GRVLKDFK--TPVWSVSWSLTGNLLAVADAN-NVTLWKE  286 (302)
Q Consensus       243 ~~~~~~~~---~~~~~~~~--~~v~~~~~spdg~~la~~~~d-~i~~w~~  286 (302)
                      +.......   ........  ..+..++++++|+++++...+ .|.+|+.
T Consensus       212 ~~~g~~~~~~~~~~~~~~~~~~~~~~i~~d~~G~l~v~~~~~~~v~~~d~  261 (333)
T 2dg1_A          212 EDDGVTIQPFGATIPYYFTGHEGPDSCCIDSDDNLYVAMYGQGRVLVFNK  261 (333)
T ss_dssp             CTTSSSEEEEEEEEEEECCSSSEEEEEEEBTTCCEEEEEETTTEEEEECT
T ss_pred             cCCCcCcccccceEEEecCCCCCCCceEECCCCCEEEEEcCCCEEEEECC
Confidence            64221111   01111111  357789999999988777555 7999986

>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A

Probab=99.52  E-value=9.9e-12  Score=103.82  Aligned_cols=239  Identities=10%  Similarity=-0.002  Sum_probs=150.2

Q ss_pred             ceeEEEEccCCCEEE-EeeCCCcEEEEeecCCCceEEEEecCcccCeEEEEeeCCCCCCEEEEEeCCCeEEEEEcCCCCc
Q 022111           13 TVHDVAMDFYGKRLA-TASSDSSIKIIGLSNSASQHLATLKGHRGPVWQVAWAHPKFGSILASCSYDGQVIIWKEGNQND   91 (302)
Q Consensus        13 ~v~~~~~s~~~~~l~-s~~~d~~v~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~s~D~~i~iwd~~~~~~   91 (302)
                      ...+++++++++.++ +...++.|.+|+.......  .....+...+.++++.++  ++++++.. ++.|.+||..... 
T Consensus        25 ~p~~i~~~~~g~l~v~~~~~~~~i~~~~~~~~~~~--~~~~~~~~~p~~i~~~~~--g~l~v~~~-~~~i~~~d~~~~~-   98 (270)
T 1rwi_B           25 SPSGVAVDSAGNVYVTSEGMYGRVVKLATGSTGTT--VLPFNGLYQPQGLAVDGA--GTVYVTDF-NNRVVTLAAGSNN-   98 (270)
T ss_dssp             CEEEEEECTTCCEEEEECSSSCEEEEECC-----E--ECCCCSCCSCCCEEECTT--CCEEEEET-TTEEEEECTTCSC-
T ss_pred             CccceEECCCCCEEEEccCCCCcEEEecCCCcccc--eEeeCCcCCcceeEECCC--CCEEEEcC-CCEEEEEeCCCce-
Confidence            667899999998777 5567889999986432211  111223345778898653  67666655 8899999876532 


Q ss_pred             eeEEEEec-CCCCCeeEEEecCCCCCcEEEEEecCCcEEEEEecCCCCeeeeeecccCCCCeEEEEeCCCCCCCceeecc
Q 022111           92 WTQAHTFN-DHKSSVNSIAWAPHELGLSLACGSSDGNISVFTATADGGWDTTRIDQAHPVGVTSVSWAPAMAPGALVGLG  170 (302)
Q Consensus        92 ~~~~~~~~-~h~~~i~~l~~~pd~~~~~l~sg~~d~~v~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~  170 (302)
                         ...+. .....+..+++.|+  +.++++...++.|.+|+......   .............++++++          
T Consensus        99 ---~~~~~~~~~~~p~~i~~~~~--g~l~v~~~~~~~i~~~~~~~~~~---~~~~~~~~~~p~~i~~~~~----------  160 (270)
T 1rwi_B           99 ---QTVLPFDGLNYPEGLAVDTQ--GAVYVADRGNNRVVKLAAGSKTQ---TVLPFTGLNDPDGVAVDNS----------  160 (270)
T ss_dssp             ---CEECCCCSCSSEEEEEECTT--CCEEEEEGGGTEEEEECTTCCSC---EECCCCSCCSCCCEEECTT----------
T ss_pred             ---EeeeecCCcCCCcceEECCC--CCEEEEECCCCEEEEEECCCcee---EeeccccCCCceeEEEeCC----------
Confidence               12222 23356889999987  56677767778888885432111   1111112223455666654          


Q ss_pred             cCCCceeEEEeeCCCcEEEEEEecCccccccccccccCCCceeEEEeeCCCCCCccEEEEEecCCeEEEEEeccCCccee
Q 022111          171 LLDPVQKLASCGCDNTVKVWKMYNGIWKMDCFPALQMHSDWVRSVAWAPNLGLPKSTIASASQDGTVVIWTCAKEGEQWE  250 (302)
Q Consensus       171 ~~~~~~~l~s~~~D~~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~l~s~s~D~~i~iwd~~~~~~~~~  250 (302)
                          +..+++...++.|.+||.......    .....+...+.+|+++|++    ..+++...++.|.+|+......   
T Consensus       161 ----g~l~v~~~~~~~i~~~~~~~~~~~----~~~~~~~~~p~~i~~d~~g----~l~v~~~~~~~v~~~~~~~~~~---  225 (270)
T 1rwi_B          161 ----GNVYVTDTDNNRVVKLEAESNNQV----VLPFTDITAPWGIAVDEAG----TVYVTEHNTNQVVKLLAGSTTS---  225 (270)
T ss_dssp             ----CCEEEEEGGGTEEEEECTTTCCEE----ECCCSSCCSEEEEEECTTC----CEEEEETTTSCEEEECTTCSCC---
T ss_pred             ----CCEEEEECCCCEEEEEecCCCceE----eecccCCCCceEEEECCCC----CEEEEECCCCcEEEEcCCCCcc---
Confidence                456777767788999997654211    1111223568899999985    6677777788999998764321   


Q ss_pred             eeeeccCCCcEEEEEEccCCCEEEEecCC-ceEEeeecCCc
Q 022111          251 GRVLKDFKTPVWSVSWSLTGNLLAVADAN-NVTLWKEAVDG  290 (302)
Q Consensus       251 ~~~~~~~~~~v~~~~~spdg~~la~~~~d-~i~~w~~~~~~  290 (302)
                      ..........+.+++++|+|+++++...+ .|++++...+.
T Consensus       226 ~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~v~~~~~~~~~  266 (270)
T 1rwi_B          226 TVLPFTGLNTPLAVAVDSDRTVYVADRGNDRVVKLTSLEHH  266 (270)
T ss_dssp             EECCCCSCSCEEEEEECTTCCEEEEEGGGTEEEEECCCGGG
T ss_pred             eeeccCCCCCceeEEECCCCCEEEEECCCCEEEEEcCCCcc
Confidence            11111222468899999999977777665 79999876543

>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}

Probab=99.51  E-value=2.6e-13  Score=119.53  Aligned_cols=233  Identities=9%  Similarity=0.033  Sum_probs=137.3

Q ss_pred             ceeEEEEccCCCEEEEeeCC-C--cEEEEeecCCCceEEEEecCcccC-eEEEEeeCCCCCCEEEEEeCCCeEEEEEcCC
Q 022111           13 TVHDVAMDFYGKRLATASSD-S--SIKIIGLSNSASQHLATLKGHRGP-VWQVAWAHPKFGSILASCSYDGQVIIWKEGN   88 (302)
Q Consensus        13 ~v~~~~~s~~~~~l~s~~~d-~--~v~lw~~~~~~~~~~~~~~~h~~~-v~~v~~~~~~~~~~l~s~s~D~~i~iwd~~~   88 (302)
                      .+.+++|+|||++|+..... +  .|.+|++..+  +. ..+..+... ...+.|+|+  |++|+.++.++.|.+||+.+
T Consensus        37 ~~~~~~~SpdG~~l~~~~~~~g~~~l~~~d~~~~--~~-~~l~~~~~~~~~~~~~spd--g~~l~~~~~~~~l~~~d~~~  111 (396)
T 3c5m_A           37 YFYQKCFTQDGKKLLFAGDFDGNRNYYLLNLETQ--QA-VQLTEGKGDNTFGGFISTD--ERAFFYVKNELNLMKVDLET  111 (396)
T ss_dssp             CTTSCCBCTTSCEEEEEECTTSSCEEEEEETTTT--EE-EECCCSSCBCTTTCEECTT--SSEEEEEETTTEEEEEETTT
T ss_pred             eeecCcCCCCCCEEEEEEecCCCceEEEEECCCC--cE-EEeecCCCCccccceECCC--CCEEEEEEcCCcEEEEECCC
Confidence            36778899999998776543 3  5777776543  32 233333333 333778864  89999999999999999876


Q ss_pred             CCceeEEEEecCCCCCeeE-------------------EEecCCCCCcEEEEE-----ecCCcEEEEEecCCCCeeeeee
Q 022111           89 QNDWTQAHTFNDHKSSVNS-------------------IAWAPHELGLSLACG-----SSDGNISVFTATADGGWDTTRI  144 (302)
Q Consensus        89 ~~~~~~~~~~~~h~~~i~~-------------------l~~~pd~~~~~l~sg-----~~d~~v~~~~~~~~~~~~~~~~  144 (302)
                      +..   ...+..+......                   +.|+|+  +..++..     ..+..|.+||+.... ..  .+
T Consensus       112 ~~~---~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~spd--g~~~~~~~~~~~~~~~~l~~~d~~~g~-~~--~~  183 (396)
T 3c5m_A          112 LEE---QVIYTVDEEWKGYGTWVANSDCTKLVGIEILKRDWQPL--TSWEKFAEFYHTNPTCRLIKVDIETGE-LE--VI  183 (396)
T ss_dssp             CCE---EEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCC--CSHHHHHHHHHTCCCEEEEEEETTTCC-EE--EE
T ss_pred             CCc---EEEEecccccCCCCCEEEeccCCccccccccccccCCC--CcceeeeeeccCCCcceEEEEECCCCc-EE--ee
Confidence            532   2222223332222                   345665  3334333     345678888876432 21  12


Q ss_pred             cccCCCCeEEEEeCCCCCCCceeecccCCCceeEEEeeCC------CcEEEEEEecCccccccccccccC--CCceeEEE
Q 022111          145 DQAHPVGVTSVSWAPAMAPGALVGLGLLDPVQKLASCGCD------NTVKVWKMYNGIWKMDCFPALQMH--SDWVRSVA  216 (302)
Q Consensus       145 ~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~D------~~v~iwd~~~~~~~~~~~~~~~~h--~~~v~~v~  216 (302)
                      . .+...+..+.|+|..             ++.|+.++.+      ..|.+||+.++..     ..+..+  ...+..++
T Consensus       184 ~-~~~~~~~~~~~sp~d-------------g~~l~~~~~~~~~~~~~~l~~~d~~~~~~-----~~l~~~~~~~~~~~~~  244 (396)
T 3c5m_A          184 H-QDTAWLGHPIYRPFD-------------DSTVGFCHEGPHDLVDARMWLVNEDGSNV-----RKIKEHAEGESCTHEF  244 (396)
T ss_dssp             E-EESSCEEEEEEETTE-------------EEEEEEEECSCSSSCSCCCEEEETTSCCC-----EESSCCCTTEEEEEEE
T ss_pred             c-cCCcccccceECCCC-------------CCEEEEEecCCCCCCCceEEEEECCCCce-----eEeeccCCCccccceE
Confidence            1 345567888998821             3555555443      3577777654321     112222  23588899


Q ss_pred             eeCCCCCCccEEEEEecC-----CeEEEEEeccCCcceeeeeeccCCCcEEEEEEcc-CCCEEEEec-------------
Q 022111          217 WAPNLGLPKSTIASASQD-----GTVVIWTCAKEGEQWEGRVLKDFKTPVWSVSWSL-TGNLLAVAD-------------  277 (302)
Q Consensus       217 ~~p~~~~~~~~l~s~s~D-----~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp-dg~~la~~~-------------  277 (302)
                      |+|++    +.|+.++.+     +.|++||+.....    ..+..... .. ++|+| ||++|++++             
T Consensus       245 ~spdg----~~l~~~~~~~~~~~~~l~~~d~~~g~~----~~l~~~~~-~~-~~~s~~dg~~l~~~~~~~p~~~~~~~~~  314 (396)
T 3c5m_A          245 WIPDG----SAMAYVSYFKGQTDRVIYKANPETLEN----EEVMVMPP-CS-HLMSNFDGSLMVGDGCDAPVDVADADSY  314 (396)
T ss_dssp             ECTTS----SCEEEEEEETTTCCEEEEEECTTTCCE----EEEEECCS-EE-EEEECSSSSEEEEEECCC----------
T ss_pred             ECCCC----CEEEEEecCCCCccceEEEEECCCCCe----EEeeeCCC-CC-CCccCCCCceEEEecCCcceeecccccc
Confidence            99996    556666554     4599999865321    11112221 22 89999 999888753             


Q ss_pred             ---CC-ceEEeeec
Q 022111          278 ---AN-NVTLWKEA  287 (302)
Q Consensus       278 ---~d-~i~~w~~~  287 (302)
                         .+ .|.+|+..
T Consensus       315 ~~~~~~~i~~~d~~  328 (396)
T 3c5m_A          315 NIENDPFLYVLNTK  328 (396)
T ss_dssp             CCCCCCEEEEEETT
T ss_pred             ccCCCCcEEEEecc
Confidence               22 68889864

>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}

Probab=99.47  E-value=2.4e-11  Score=105.23  Aligned_cols=224  Identities=13%  Similarity=0.107  Sum_probs=134.6

Q ss_pred             cceeEEEEccCCCEEEEee---------CCCcEEEEeecCCCceEEEEecCcccCeEEEEeeCCCCCCEEEEEeCC---C
Q 022111           12 DTVHDVAMDFYGKRLATAS---------SDSSIKIIGLSNSASQHLATLKGHRGPVWQVAWAHPKFGSILASCSYD---G   79 (302)
Q Consensus        12 ~~v~~~~~s~~~~~l~s~~---------~d~~v~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~s~D---~   79 (302)
                      ..+....+  ||++++...         .++.|.+|++..+..   ..+    ..+..++|+|+  |++||.++.+   +
T Consensus        15 ~~~~~~~~--dG~~i~~~~~~~~~~~~~~~~~l~~~d~~~~~~---~~l----~~~~~~~~SpD--g~~la~~~~~~~~~   83 (347)
T 2gop_A           15 AYLSDPRT--KGELVAYVLTKANLKDNKYENTIVIENLKNNAR---RFI----ENATMPRISPD--GKKIAFMRANEEKK   83 (347)
T ss_dssp             CEEEEEEE--ETTEEEEEEEEEETTTTEEEEEEEEEETTTCCE---EEE----ESCEEEEECTT--SSEEEEEEEETTTT
T ss_pred             EEcccceE--CCcEEEEEEeecCcccCCccceEEEEeCCCCce---EEc----ccCCCeEECCC--CCEEEEEEeccCCC
Confidence            35667777  898887542         256788888865432   223    46788999875  8888877754   3


Q ss_pred             e--EEEEEcCCCCceeEEEEecCCCCCeeEEEecCCCCCcEEEEEecC---------------------------CcEEE
Q 022111           80 Q--VIIWKEGNQNDWTQAHTFNDHKSSVNSIAWAPHELGLSLACGSSD---------------------------GNISV  130 (302)
Q Consensus        80 ~--i~iwd~~~~~~~~~~~~~~~h~~~i~~l~~~pd~~~~~l~sg~~d---------------------------~~v~~  130 (302)
                      .  |.+|++.++.   .. .+..+.. +..++|+||  +..|+.++.+                           ..|.+
T Consensus        84 ~~~l~~~~~~~g~---~~-~l~~~~~-~~~~~wspd--g~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~  156 (347)
T 2gop_A           84 VSEIWVADLETLS---SK-KILEAKN-IRSLEWNED--SRKLLIVGFKRREDEDFIFEDDVPAWFDDLGFFDGEKTTFWI  156 (347)
T ss_dssp             EEEEEEEETTTTE---EE-EEEEESE-EEEEEECTT--SSEEEEEEECCCC---------CCCC---------CEEEEEE
T ss_pred             cceEEEEECCCCc---eE-EEEcCCC-ccceeECCC--CCEEEEEEccCCCcCCcEEEcccceeecCcccccCccceEEE
Confidence            4  6666765542   22 2222333 899999998  6677777642                           46777


Q ss_pred             EEecCCCCeeeeeecccCCCCeEEEEeCCCCCCCceeecccCCCceeEEEeeCCC-------cEEEEEEecCcccccccc
Q 022111          131 FTATADGGWDTTRIDQAHPVGVTSVSWAPAMAPGALVGLGLLDPVQKLASCGCDN-------TVKVWKMYNGIWKMDCFP  203 (302)
Q Consensus       131 ~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~D~-------~v~iwd~~~~~~~~~~~~  203 (302)
                      |++... .. ...+. . . .+..+.|+|+              + .++++..+.       ...||.+.++.     ..
T Consensus       157 ~d~~~~-~~-~~~l~-~-~-~~~~~~~spd--------------g-~~~~~~~~~~~~~~~~~~~l~~~d~~~-----~~  211 (347)
T 2gop_A          157 FDTESE-EV-IEEFE-K-P-RFSSGIWHRD--------------K-IVVNVPHREIIPQYFKFWDIYIWEDGK-----EE  211 (347)
T ss_dssp             EETTTT-EE-EEEEE-E-E-TTCEEEEETT--------------E-EEEEEECCCSSCCSSCCEEEEEEETTE-----EE
T ss_pred             EECCCC-eE-Eeeec-C-C-CcccccCCCC--------------e-EEEEEecccccccccccccEEEeCCCc-----eE
Confidence            776533 21 12222 1 2 5678888875              4 555554442       45666655332     11


Q ss_pred             ccccCCCceeEEEeeCCCCCCccEEEEEecC--------CeEEEEEeccCCcceeeeeeccCCCcEEE-EEEccCCCEEE
Q 022111          204 ALQMHSDWVRSVAWAPNLGLPKSTIASASQD--------GTVVIWTCAKEGEQWEGRVLKDFKTPVWS-VSWSLTGNLLA  274 (302)
Q Consensus       204 ~~~~h~~~v~~v~~~p~~~~~~~~l~s~s~D--------~~i~iwd~~~~~~~~~~~~~~~~~~~v~~-~~~spdg~~la  274 (302)
                      .+..+ ..+.++  +|++    +.|+.++.+        ..|.+||  . .. . ..+..++...+.. +.|+ || +++
T Consensus       212 ~l~~~-~~~~~~--spdg----~~l~~~~~~~~~~~~~~~~l~~~d--~-~~-~-~~l~~~~~~~~~~~~~~s-dg-~~~  277 (347)
T 2gop_A          212 KMFEK-VSFYAV--DSDG----ERILLYGKPEKKYMSEHNKLYIYD--G-KE-V-MGILDEVDRGVGQAKIKD-GK-VYF  277 (347)
T ss_dssp             EEEEE-ESEEEE--EECS----SCEEEEECCSSSCCCSSCEEEEEC--S-SC-E-EESSTTCCSEEEEEEEET-TE-EEE
T ss_pred             EeccC-cceeeE--CCCC----CEEEEEEccccCCccccceEEEEC--C-Cc-e-EeccccCCcccCCccEEc-Cc-EEE
Confidence            22223 445544  8986    567776644        3577776  2 11 1 2233455567876 9999 98 877


Q ss_pred             EecCC-ceEEeeecCCceEEE
Q 022111          275 VADAN-NVTLWKEAVDGEWQQ  294 (302)
Q Consensus       275 ~~~~d-~i~~w~~~~~~~~~~  294 (302)
                      ++..+ .++|| .. +|+..+
T Consensus       278 ~~~~~~~~~l~-~~-~g~~~~  296 (347)
T 2gop_A          278 TLFEEGSVNLY-IW-DGEIKP  296 (347)
T ss_dssp             EEEETTEEEEE-EE-SSSEEE
T ss_pred             EEecCCcEEEE-Ec-CCceEE
Confidence            77766 79999 87 555433

>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...

Probab=99.47  E-value=2.5e-10  Score=97.34  Aligned_cols=248  Identities=8%  Similarity=0.030  Sum_probs=148.2

Q ss_pred             ccceeEEEEccCCCEEEE-------eeCCCcEEEEeecCCCceEEEE--ecCcccCeEEEEeeCCCCCCEEEEEeCCCeE
Q 022111           11 EDTVHDVAMDFYGKRLAT-------ASSDSSIKIIGLSNSASQHLAT--LKGHRGPVWQVAWAHPKFGSILASCSYDGQV   81 (302)
Q Consensus        11 ~~~v~~~~~s~~~~~l~s-------~~~d~~v~lw~~~~~~~~~~~~--~~~h~~~v~~v~~~~~~~~~~l~s~s~D~~i   81 (302)
                      -....+++|+++++.+++       +..++.|.+|+........+..  ..++...+..+++.++ .++++++.. ...|
T Consensus        17 ~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~~~~-~g~l~v~~~-~~~l   94 (314)
T 1pjx_A           17 IPGAEGPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKPEVNGYGGIPAGCQCDRD-ANQLFVADM-RLGL   94 (314)
T ss_dssp             CTTCEEEEECTTSCEEEEETTCEETTEECCEEEEECTTTCCEEEEECCEETTEECCEEEEEECSS-SSEEEEEET-TTEE
T ss_pred             CCCccCceECCCCCEEEEEeccccCCCCCCEEEEEeCCCCcEEEEEecccCCCCCCCceEEEecC-CCcEEEEEC-CCCE
Confidence            345678899999988887       6778999999875433222111  1235567889998653 155555444 4478


Q ss_pred             EEEEcCCCCceeEE-EEe-c-CCCCCeeEEEecCCCCCcEEEEEecC---------------CcEEEEEecCCCCeeeee
Q 022111           82 IIWKEGNQNDWTQA-HTF-N-DHKSSVNSIAWAPHELGLSLACGSSD---------------GNISVFTATADGGWDTTR  143 (302)
Q Consensus        82 ~iwd~~~~~~~~~~-~~~-~-~h~~~i~~l~~~pd~~~~~l~sg~~d---------------~~v~~~~~~~~~~~~~~~  143 (302)
                      .+||.. +. .... ... . .....+.++++.|+  +.++++...+               +.|..|+.  .+..... 
T Consensus        95 ~~~d~~-g~-~~~~~~~~~~~~~~~~~~~i~~d~~--g~l~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~--~g~~~~~-  167 (314)
T 1pjx_A           95 LVVQTD-GT-FEEIAKKDSEGRRMQGCNDCAFDYE--GNLWITAPAGEVAPADYTRSMQEKFGSIYCFTT--DGQMIQV-  167 (314)
T ss_dssp             EEEETT-SC-EEECCSBCTTSCBCBCCCEEEECTT--SCEEEEECBCBCTTSCCCBTTSSSCEEEEEECT--TSCEEEE-
T ss_pred             EEEeCC-CC-EEEEEeccCCCccccCCcCEEECCC--CCEEEEecCcccccccccccccCCCCeEEEECC--CCCEEEe-
Confidence            889876 32 1111 110 1 11245789999887  5566655444               34444442  2322211 


Q ss_pred             ecccCCCCeEEEEeC----CCCCCCceeecccCCCce-eEEEeeCCCcEEEEEEe-cCccc-cccccccccCC-CceeEE
Q 022111          144 IDQAHPVGVTSVSWA----PAMAPGALVGLGLLDPVQ-KLASCGCDNTVKVWKMY-NGIWK-MDCFPALQMHS-DWVRSV  215 (302)
Q Consensus       144 ~~~~h~~~v~~~~~~----~~~~~~~~~~~~~~~~~~-~l~s~~~D~~v~iwd~~-~~~~~-~~~~~~~~~h~-~~v~~v  215 (302)
                      .  .+......++|+    |+              ++ .+++...++.|.+||+. ++... ......+.++. .....+
T Consensus       168 ~--~~~~~~~~i~~~~~~d~d--------------g~~l~v~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~i  231 (314)
T 1pjx_A          168 D--TAFQFPNGIAVRHMNDGR--------------PYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGM  231 (314)
T ss_dssp             E--EEESSEEEEEEEECTTSC--------------EEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEE
T ss_pred             c--cCCCCcceEEEecccCCC--------------CCEEEEEECCCCeEEEEECCCCCccccceEEEECCCCCCCCCCce
Confidence            1  122234667776    54              33 44555678899999986 33210 11222334444 667889


Q ss_pred             EeeCCCCCCccEEEEEecCCeEEEEEeccCCcceeeeeeccCCCcEEEEEEccCCCEEEEecCC--ceEEeeecCCc
Q 022111          216 AWAPNLGLPKSTIASASQDGTVVIWTCAKEGEQWEGRVLKDFKTPVWSVSWSLTGNLLAVADAN--NVTLWKEAVDG  290 (302)
Q Consensus       216 ~~~p~~~~~~~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~la~~~~d--~i~~w~~~~~~  290 (302)
                      ++++++    +..++...++.|.+||.++....   .........+.+++|+|+|+.|.+++.+  .|..|+....|
T Consensus       232 ~~d~~G----~l~v~~~~~~~i~~~d~~~g~~~---~~~~~~~~~~~~i~~~~dg~~l~v~~~~~~~l~~~~~~~~g  301 (314)
T 1pjx_A          232 DFDEDN----NLLVANWGSSHIEVFGPDGGQPK---MRIRCPFEKPSNLHFKPQTKTIFVTEHENNAVWKFEWQRNG  301 (314)
T ss_dssp             EEBTTC----CEEEEEETTTEEEEECTTCBSCS---EEEECSSSCEEEEEECTTSSEEEEEETTTTEEEEEECSSCB
T ss_pred             EECCCC----CEEEEEcCCCEEEEEcCCCCcEe---EEEeCCCCCceeEEECCCCCEEEEEeCCCCeEEEEeCCCCC
Confidence            999985    66777778899999997632211   1112233568999999999966555444  79999876654

>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...

Probab=99.45  E-value=1.5e-10  Score=101.53  Aligned_cols=245  Identities=10%  Similarity=0.047  Sum_probs=137.1

Q ss_pred             cCCCEEEEee------CCCcEEEEeecCCCceEEEEecCcccCeEEEEeeCCCCCCEEEEEe----------CCCeEEEE
Q 022111           21 FYGKRLATAS------SDSSIKIIGLSNSASQHLATLKGHRGPVWQVAWAHPKFGSILASCS----------YDGQVIIW   84 (302)
Q Consensus        21 ~~~~~l~s~~------~d~~v~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~s----------~D~~i~iw   84 (302)
                      +++++++...      .|++|++||...  .+.+..+..+..+  .++|+++  +++|++++          .+++|.+|
T Consensus        13 ~~~~~~yv~~~~~~~~~d~~v~v~D~~t--~~~~~~i~~g~~p--~i~~spd--g~~lyv~~~~~~~~~~g~~~~~v~v~   86 (361)
T 2oiz_A           13 PQENRIYVMDSVFMHLTESRVHVYDYTN--GKFLGMVPTAFNG--HVQVSND--GKKIYTMTTYHERITRGKRSDVVEVW   86 (361)
T ss_dssp             CGGGEEEEEECCGGGGGGCEEEEEETTT--CCEEEEEECCEEE--EEEECTT--SSEEEEEEEEETTSSSSCEEEEEEEE
T ss_pred             CCCCEEEEECCCCCccccCeEEEEECCC--CeEEEEecCCCCC--ceEECCC--CCEEEEEEecccccccCCCCCEEEEE
Confidence            3556666543      478999999754  3445666666655  8999864  78887775          36789999


Q ss_pred             EcCCCCceeEEEEecC------CCCCeeEEEecCCCCCcEEEEEec--CCcEEEEEecCCCCeeeee-ecccC-------
Q 022111           85 KEGNQNDWTQAHTFND------HKSSVNSIAWAPHELGLSLACGSS--DGNISVFTATADGGWDTTR-IDQAH-------  148 (302)
Q Consensus        85 d~~~~~~~~~~~~~~~------h~~~i~~l~~~pd~~~~~l~sg~~--d~~v~~~~~~~~~~~~~~~-~~~~h-------  148 (302)
                      |..+..   ...++..      +......++++||  |++|+++..  ++.|.+||..+...  ... +....       
T Consensus        87 d~~t~~---~~~~i~~~~~~~~~g~~p~~i~~spd--g~~l~v~n~~~~~~v~v~d~~~~~~--~~~~i~~~~~~~v~~~  159 (361)
T 2oiz_A           87 DADKLT---FEKEISLPPKRVQGLNYDGLFRQTTD--GKFIVLQNASPATSIGIVDVAKGDY--VEDVTAAAGCWSVIPQ  159 (361)
T ss_dssp             ETTTCC---EEEEEEECTTBCCBCCCGGGEEECTT--SSEEEEEEESSSEEEEEEETTTTEE--EEEEGGGTTEEEEEEC
T ss_pred             ECcCCc---EEEEEEcCccccccCCCcceEEECCC--CCEEEEECCCCCCeEEEEECCCCcE--EEEEecCCCcceeEEc
Confidence            987653   3333322      2245678999998  667777663  68999999875422  122 11000       


Q ss_pred             CC-CeEEEEeCCCCC--------CCcee----------------ecccCCCceeEEEeeCCCcEEEEEEecCcccccccc
Q 022111          149 PV-GVTSVSWAPAMA--------PGALV----------------GLGLLDPVQKLASCGCDNTVKVWKMYNGIWKMDCFP  203 (302)
Q Consensus       149 ~~-~v~~~~~~~~~~--------~~~~~----------------~~~~~~~~~~l~s~~~D~~v~iwd~~~~~~~~~~~~  203 (302)
                      +. .-.-+..++++.        .+...                .....+++..++..+.++.|.++|+......  ...
T Consensus       160 p~~~~~~~~~~~dg~~~~v~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~v~d~~~~~~~--~~~  237 (361)
T 2oiz_A          160 PNRPRSFMTICGDGGLLTINLGEDGKVASQSRSKQMFSVKDDPIFIAPALDKDKAHFVSYYGNVYSADFSGDEVK--VDG  237 (361)
T ss_dssp             TTSSSEEEEEETTSSEEEEEECTTSSEEEEEECCCCSCTTTSCBCSCCEECSSEEEEEBTTSEEEEEECSSSSCE--EEE
T ss_pred             CCCCeeEEEECCCCcEEEEEECCCCcEeeeccccceEcCCCCceEEEecccCCEEEEEeCCCeEEEEEecCCCce--ecc
Confidence            00 000011111110        01110                0000112334455567778888887543111  000


Q ss_pred             ccc------cCCC----ceeEEEeeCCCCCCccEEEEEe----------cCCeEEEEEeccCCcceeeeeeccCCCcEEE
Q 022111          204 ALQ------MHSD----WVRSVAWAPNLGLPKSTIASAS----------QDGTVVIWTCAKEGEQWEGRVLKDFKTPVWS  263 (302)
Q Consensus       204 ~~~------~h~~----~v~~v~~~p~~~~~~~~l~s~s----------~D~~i~iwd~~~~~~~~~~~~~~~~~~~v~~  263 (302)
                      .+.      .+..    ...-++|+|++   +..+++.+          ....|.+||+.+.+.  ...+ ... . +++
T Consensus       238 ~~~~~~~~~~~~~~~p~g~~~~a~~~dg---~~lyv~~~~~~~~~~~~~~~~~v~viD~~t~~~--v~~i-~~~-~-p~~  309 (361)
T 2oiz_A          238 PWSLLNDEDKAKNWVPGGYNLVGLHRAS---GRMYVFMHPDGKEGTHKFPAAEIWVMDTKTKQR--VARI-PGR-D-ALS  309 (361)
T ss_dssp             EEESCCHHHHHTTCEECCSSCEEEETTT---TEEEEEEESSCCTTCTTCCCSEEEEEETTTTEE--EEEE-ECT-T-CCE
T ss_pred             cccccCccccccccccCCeeEEEEecCC---CeEEEEEccCCCcccccCCCceEEEEECCCCcE--EEEE-ecC-C-eeE
Confidence            000      0111    11126889986   23444433          134799999876421  1122 222 2 899


Q ss_pred             EEEccCCCEEEEecCCceEEeeecC
Q 022111          264 VSWSLTGNLLAVADANNVTLWKEAV  288 (302)
Q Consensus       264 ~~~spdg~~la~~~~d~i~~w~~~~  288 (302)
                      ++|+|||++|++++.+.|.+||.+.
T Consensus       310 ia~spdg~~l~v~n~~~v~v~D~~t  334 (361)
T 2oiz_A          310 MTIDQQRNLMLTLDGGNVNVYDISQ  334 (361)
T ss_dssp             EEEETTTTEEEEECSSCEEEEECSS
T ss_pred             EEECCCCCEEEEeCCCeEEEEECCC
Confidence            9999999999888777899999764

>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*

Probab=99.45  E-value=1.7e-09  Score=91.11  Aligned_cols=248  Identities=10%  Similarity=-0.012  Sum_probs=158.3

Q ss_pred             ccccceeEEEEccCCCEEEEeeCCCcEEEEeecCCCceEEEEecCcccCeEEEEeeCCCCCCEEEEEeCCCeEEEEEcCC
Q 022111            9 GHEDTVHDVAMDFYGKRLATASSDSSIKIIGLSNSASQHLATLKGHRGPVWQVAWAHPKFGSILASCSYDGQVIIWKEGN   88 (302)
Q Consensus         9 ~h~~~v~~~~~s~~~~~l~s~~~d~~v~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~s~D~~i~iwd~~~   88 (302)
                      .+...+.+++++++|+.+++...++.|.+|+.. .... ...+..+...+..+++.+  ++.++++...++.|..||...
T Consensus        12 ~~~~~~~~i~~d~~g~l~v~~~~~~~v~~~d~~-~~~~-~~~~~~~~~~~~~i~~~~--~g~l~v~~~~~~~i~~~~~~g   87 (299)
T 2z2n_A           12 NQDTGPYGITVSDKGKVWITQHKANMISCINLD-GKIT-EYPLPTPDAKVMCLTISS--DGEVWFTENAANKIGRITKKG   87 (299)
T ss_dssp             SSSCCEEEEEECTTSCEEEEETTTTEEEEECTT-CCEE-EEECSSTTCCEEEEEECT--TSCEEEEETTTTEEEEECTTS
T ss_pred             CcCCCccceEECCCCCEEEEecCCCcEEEEcCC-CCeE-EecCCcccCceeeEEECC--CCCEEEeCCCCCeEEEECCCC
Confidence            445678999999999988776667899999876 3222 122233456788999865  377877777788899998752


Q ss_pred             CCceeEEEEecCCCCCeeEEEecCCCCCcEEEEEecCCcEEEEEecCCCCeeeeeecccCCCCeEEEEeCCCCCCCceee
Q 022111           89 QNDWTQAHTFNDHKSSVNSIAWAPHELGLSLACGSSDGNISVFTATADGGWDTTRIDQAHPVGVTSVSWAPAMAPGALVG  168 (302)
Q Consensus        89 ~~~~~~~~~~~~h~~~i~~l~~~pd~~~~~l~sg~~d~~v~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~  168 (302)
                        ... ...+......+..+++.|+  +.++++...++.|..|+.  .+........ .+...+..+.+.++        
T Consensus        88 --~~~-~~~~~~~~~~~~~i~~~~~--g~l~v~~~~~~~i~~~d~--~g~~~~~~~~-~~~~~~~~i~~~~~--------  151 (299)
T 2z2n_A           88 --IIK-EYTLPNPDSAPYGITEGPN--GDIWFTEMNGNRIGRITD--DGKIREYELP-NKGSYPSFITLGSD--------  151 (299)
T ss_dssp             --CEE-EEECSSTTCCEEEEEECTT--SCEEEEETTTTEEEEECT--TCCEEEEECS-STTCCEEEEEECTT--------
T ss_pred             --cEE-EEeCCCcCCCceeeEECCC--CCEEEEecCCceEEEECC--CCCEEEecCC-CCCCCCceEEEcCC--------
Confidence              111 1222234557889999886  566776666788888876  2222222111 22334667777654        


Q ss_pred             cccCCCceeEEEeeCCCcEEEEEEecCccccccccccccCCCceeEEEeeCCCCCCccEEEEEecCCeEEEEEeccCCcc
Q 022111          169 LGLLDPVQKLASCGCDNTVKVWKMYNGIWKMDCFPALQMHSDWVRSVAWAPNLGLPKSTIASASQDGTVVIWTCAKEGEQ  248 (302)
Q Consensus       169 ~~~~~~~~~l~s~~~D~~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~l~s~s~D~~i~iwd~~~~~~~  248 (302)
                            +..+++...++.|.+||. ++...  .+ .+..+...+.++++.|++    ...++...++.|.+||. ...  
T Consensus       152 ------g~l~v~~~~~~~i~~~~~-~g~~~--~~-~~~~~~~~~~~i~~~~~g----~l~v~~~~~~~i~~~~~-~g~--  214 (299)
T 2z2n_A          152 ------NALWFTENQNNAIGRITE-SGDIT--EF-KIPTPASGPVGITKGNDD----ALWFVEIIGNKIGRITT-SGE--  214 (299)
T ss_dssp             ------SCEEEEETTTTEEEEECT-TCCEE--EE-ECSSTTCCEEEEEECTTS----SEEEEETTTTEEEEECT-TCC--
T ss_pred             ------CCEEEEeCCCCEEEEEcC-CCcEE--Ee-eCCCCCCcceeEEECCCC----CEEEEccCCceEEEECC-CCc--
Confidence                  356666666788999987 44211  11 122334568899999985    56666667889999987 321  


Q ss_pred             eeeeeeccCCCcEEEEEEccCCCEEEEecC-CceEEeeecCCceEEEe
Q 022111          249 WEGRVLKDFKTPVWSVSWSLTGNLLAVADA-NNVTLWKEAVDGEWQQV  295 (302)
Q Consensus       249 ~~~~~~~~~~~~v~~~~~spdg~~la~~~~-d~i~~w~~~~~~~~~~~  295 (302)
                      ............+.+++++++|+++++... +.|.+|+.  +++....
T Consensus       215 ~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~--~g~~~~~  260 (299)
T 2z2n_A          215 ITEFKIPTPNARPHAITAGAGIDLWFTEWGANKIGRLTS--NNIIEEY  260 (299)
T ss_dssp             EEEEECSSTTCCEEEEEECSTTCEEEEETTTTEEEEEET--TTEEEEE
T ss_pred             EEEEECCCCCCCceeEEECCCCCEEEeccCCceEEEECC--CCceEEE
Confidence            111112223356889999999997766644 47999986  3554443

>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*

Probab=99.43  E-value=3.5e-11  Score=104.06  Aligned_cols=209  Identities=15%  Similarity=0.135  Sum_probs=142.7

Q ss_pred             ccceeEEEEccCCCEEEEeeCCCcEEEEeecCCCceEEEEe---------cCcccCeEEEEeeCCCCCCEEEEEe-CCCe
Q 022111           11 EDTVHDVAMDFYGKRLATASSDSSIKIIGLSNSASQHLATL---------KGHRGPVWQVAWAHPKFGSILASCS-YDGQ   80 (302)
Q Consensus        11 ~~~v~~~~~s~~~~~l~s~~~d~~v~lw~~~~~~~~~~~~~---------~~h~~~v~~v~~~~~~~~~~l~s~s-~D~~   80 (302)
                      -.....++++++|+++++...++.|++|+..... ..+..+         .++......|++++. ++.++++.+ .++.
T Consensus        90 ~~~p~gia~d~~g~l~v~d~~~~~v~~~~~~g~~-~~~~~~~~~~~~g~~~~~~~~P~~ia~~~~-~g~lyv~d~~~~~~  167 (329)
T 3fvz_A           90 FYLPHGLSIDTDGNYWVTDVALHQVFKLDPHSKE-GPLLILGRSMQPGSDQNHFCQPTDVAVEPS-TGAVFVSDGYCNSR  167 (329)
T ss_dssp             CSSEEEEEECTTSCEEEEETTTTEEEEECTTCSS-CCSEEESBTTBCCCSTTCCSSEEEEEECTT-TCCEEEEECSSCCE
T ss_pred             cCCceEEEECCCCCEEEEECCCCEEEEEeCCCCe-EEEEEecccCCCCCCccccCCCcEEEEeCC-CCeEEEEeCCCCCe
Confidence            3467789999999988888888999999975431 123334         244456789999763 378888886 6999


Q ss_pred             EEEEEcCCCCceeEEEEec----------CCCCCeeEEEecCCCCCcEEEEEecCCcEEEEEecCCCCeeeeeec-ccCC
Q 022111           81 VIIWKEGNQNDWTQAHTFN----------DHKSSVNSIAWAPHELGLSLACGSSDGNISVFTATADGGWDTTRID-QAHP  149 (302)
Q Consensus        81 i~iwd~~~~~~~~~~~~~~----------~h~~~i~~l~~~pd~~~~~l~sg~~d~~v~~~~~~~~~~~~~~~~~-~~h~  149 (302)
                      |++|+.. +.   .+..+.          ++......++++|+. +.++++...++.|++|+..++ ... ..+. ..+.
T Consensus       168 I~~~~~~-g~---~~~~~~~~g~~~~~~~~~~~~p~gia~d~~~-g~l~v~d~~~~~I~~~~~~~G-~~~-~~~~~~~~~  240 (329)
T 3fvz_A          168 IVQFSPS-GK---FVTQWGEESSGSSPRPGQFSVPHSLALVPHL-DQLCVADRENGRIQCFKTDTK-EFV-REIKHASFG  240 (329)
T ss_dssp             EEEECTT-SC---EEEEECEECCSSSCCTTEESCEEEEEEETTT-TEEEEEETTTTEEEEEETTTC-CEE-EEECCTTTT
T ss_pred             EEEEcCC-CC---EEEEeccCCCCCCCCCcccCCCcEEEEECCC-CEEEEEECCCCEEEEEECCCC-cEE-EEEeccccC
Confidence            9999853 22   233332          122347899999873 567777788899999997633 222 2221 2345


Q ss_pred             CCeEEEEeCCCCCCCceeecccCCCceeEEEeeCCCcEEEEEEecCcccccccccc---ccCCCceeEEEeeCCCCCCcc
Q 022111          150 VGVTSVSWAPAMAPGALVGLGLLDPVQKLASCGCDNTVKVWKMYNGIWKMDCFPAL---QMHSDWVRSVAWAPNLGLPKS  226 (302)
Q Consensus       150 ~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~D~~v~iwd~~~~~~~~~~~~~~---~~h~~~v~~v~~~p~~~~~~~  226 (302)
                      ..+..++++| +   .++.    .++..+++...+..|++||+.++.    .+..+   .++.....+|+++|++    .
T Consensus       241 ~~~~~~~~~p-g---~~~~----~~g~~~v~~~~~~~v~~~~~~~g~----~~~~~~~~~~~~~~p~~ia~~~dG----~  304 (329)
T 3fvz_A          241 RNVFAISYIP-G---FLFA----VNGKPYFGDQEPVQGFVMNFSSGE----IIDVFKPVRKHFDMPHDIVASEDG----T  304 (329)
T ss_dssp             TCEEEEEEET-T---EEEE----EECCCCTTCSCCCCEEEEETTTCC----EEEEECCSSSCCSSEEEEEECTTS----E
T ss_pred             CCcceeeecC-C---EEEE----eCCCEEeccCCCcEEEEEEcCCCe----EEEEEcCCCCccCCeeEEEECCCC----C
Confidence            5677888887 1   1111    123455556667799999987763    22233   3567778999999985    7


Q ss_pred             EEEEEecCCeEEEEEecc
Q 022111          227 TIASASQDGTVVIWTCAK  244 (302)
Q Consensus       227 ~l~s~s~D~~i~iwd~~~  244 (302)
                      .+++...++.|++|++..
T Consensus       305 lyvad~~~~~I~~~~~~~  322 (329)
T 3fvz_A          305 VYIGDAHTNTVWKFTLTE  322 (329)
T ss_dssp             EEEEESSSCCEEEEEEEE
T ss_pred             EEEEECCCCEEEEEeCCc
Confidence            888999999999999864

>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1

Probab=99.43  E-value=1.1e-10  Score=98.56  Aligned_cols=198  Identities=17%  Similarity=0.145  Sum_probs=131.6

Q ss_pred             ccccceeEEEE-ccCCCEEEEeeC-CCcEEEEeecCCCceEEEEec-CcccCeEEEEeeCCCCCCEEEEEeCCCeEEEEE
Q 022111            9 GHEDTVHDVAM-DFYGKRLATASS-DSSIKIIGLSNSASQHLATLK-GHRGPVWQVAWAHPKFGSILASCSYDGQVIIWK   85 (302)
Q Consensus         9 ~h~~~v~~~~~-s~~~~~l~s~~~-d~~v~lw~~~~~~~~~~~~~~-~h~~~v~~v~~~~~~~~~~l~s~s~D~~i~iwd   85 (302)
                      +|...+..+++ +++++++++... ++.|++|+...   +.+..+. .+...+..+++.++  |+++++...++.|.+||
T Consensus        74 ~~~~~p~~i~~~~~~g~l~v~~~~~~~~i~~~d~~g---~~~~~~~~~~~~~~~~i~~~~~--g~l~v~~~~~~~i~~~~  148 (286)
T 1q7f_A           74 SQLLYPNRVAVVRNSGDIIVTERSPTHQIQIYNQYG---QFVRKFGATILQHPRGVTVDNK--GRIIVVECKVMRVIIFD  148 (286)
T ss_dssp             TCBSSEEEEEEETTTTEEEEEECGGGCEEEEECTTS---CEEEEECTTTCSCEEEEEECTT--SCEEEEETTTTEEEEEC
T ss_pred             ccccCceEEEEEcCCCeEEEEcCCCCCEEEEECCCC---cEEEEecCccCCCceEEEEeCC--CCEEEEECCCCEEEEEc
Confidence            34457888999 577766666533 78999998432   3344443 34456789999753  78888888889999998


Q ss_pred             cCCCCceeEEEEec--CCCCCeeEEEecCCCCCcEEEEEecCCcEEEEEecCCCCeeeeeec-ccCCCCeEEEEeCCCCC
Q 022111           86 EGNQNDWTQAHTFN--DHKSSVNSIAWAPHELGLSLACGSSDGNISVFTATADGGWDTTRID-QAHPVGVTSVSWAPAMA  162 (302)
Q Consensus        86 ~~~~~~~~~~~~~~--~h~~~i~~l~~~pd~~~~~l~sg~~d~~v~~~~~~~~~~~~~~~~~-~~h~~~v~~~~~~~~~~  162 (302)
                      ....    ....+.  .+...+..++++|+  +.++++...++.|++|+..  +.. ...+. .++......++++|+  
T Consensus       149 ~~g~----~~~~~~~~~~~~~p~~i~~~~~--g~l~v~~~~~~~i~~~~~~--g~~-~~~~~~~g~~~~p~~i~~d~~--  217 (286)
T 1q7f_A          149 QNGN----VLHKFGCSKHLEFPNGVVVNDK--QEIFISDNRAHCVKVFNYE--GQY-LRQIGGEGITNYPIGVGINSN--  217 (286)
T ss_dssp             TTSC----EEEEEECTTTCSSEEEEEECSS--SEEEEEEGGGTEEEEEETT--CCE-EEEESCTTTSCSEEEEEECTT--
T ss_pred             CCCC----EEEEeCCCCccCCcEEEEECCC--CCEEEEECCCCEEEEEcCC--CCE-EEEEccCCccCCCcEEEECCC--
Confidence            6432    233332  34567899999997  6677777788999999863  221 12221 122345677877765  


Q ss_pred             CCceeecccCCCceeEEEeeCCC-cEEEEEEecCccccccccccccC--CCceeEEEeeCCCCCCccEEEEEecCCeEEE
Q 022111          163 PGALVGLGLLDPVQKLASCGCDN-TVKVWKMYNGIWKMDCFPALQMH--SDWVRSVAWAPNLGLPKSTIASASQDGTVVI  239 (302)
Q Consensus       163 ~~~~~~~~~~~~~~~l~s~~~D~-~v~iwd~~~~~~~~~~~~~~~~h--~~~v~~v~~~p~~~~~~~~l~s~s~D~~i~i  239 (302)
                                  +.++++...++ .|++||....     .+..+..+  ...+.+++++|++    +.+++ +.|++|++
T Consensus       218 ------------G~l~v~~~~~~~~i~~~~~~g~-----~~~~~~~~~~~~~~~~i~~~~~g----~l~vs-~~~~~v~v  275 (286)
T 1q7f_A          218 ------------GEILIADNHNNFNLTIFTQDGQ-----LISALESKVKHAQCFDVALMDDG----SVVLA-SKDYRLYI  275 (286)
T ss_dssp             ------------CCEEEEECSSSCEEEEECTTSC-----EEEEEEESSCCSCEEEEEEETTT----EEEEE-ETTTEEEE
T ss_pred             ------------CCEEEEeCCCCEEEEEECCCCC-----EEEEEcccCCCCcceeEEECCCC----cEEEE-CCCCeEEE
Confidence                        46777777775 9999995432     22233322  2347799999985    56666 67999999


Q ss_pred             EEecc
Q 022111          240 WTCAK  244 (302)
Q Consensus       240 wd~~~  244 (302)
                      |++..
T Consensus       276 ~~~~~  280 (286)
T 1q7f_A          276 YRYVQ  280 (286)
T ss_dssp             EECSC
T ss_pred             EEccc
Confidence            98753

>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...

Probab=99.42  E-value=7.1e-11  Score=103.60  Aligned_cols=234  Identities=11%  Similarity=0.073  Sum_probs=135.5

Q ss_pred             EEEEccCCCEEEEee----------CCCcEEEEeecCCCceEEEEecC------cccCeEEEEeeCCCCCCEEEEEeC--
Q 022111           16 DVAMDFYGKRLATAS----------SDSSIKIIGLSNSASQHLATLKG------HRGPVWQVAWAHPKFGSILASCSY--   77 (302)
Q Consensus        16 ~~~~s~~~~~l~s~~----------~d~~v~lw~~~~~~~~~~~~~~~------h~~~v~~v~~~~~~~~~~l~s~s~--   77 (302)
                      .++|+||+++|+++.          .+++|.+||...  .+.+..+..      +......++|+++  |++|+++..  
T Consensus        54 ~i~~spdg~~lyv~~~~~~~~~~g~~~~~v~v~d~~t--~~~~~~i~~~~~~~~~g~~p~~i~~spd--g~~l~v~n~~~  129 (361)
T 2oiz_A           54 HVQVSNDGKKIYTMTTYHERITRGKRSDVVEVWDADK--LTFEKEISLPPKRVQGLNYDGLFRQTTD--GKFIVLQNASP  129 (361)
T ss_dssp             EEEECTTSSEEEEEEEEETTSSSSCEEEEEEEEETTT--CCEEEEEEECTTBCCBCCCGGGEEECTT--SSEEEEEEESS
T ss_pred             ceEECCCCCEEEEEEecccccccCCCCCEEEEEECcC--CcEEEEEEcCccccccCCCcceEEECCC--CCEEEEECCCC
Confidence            789999999999886          367899999754  334444431      1234567888764  888877764  


Q ss_pred             CCeEEEEEcCCCCceeEEEE-ecCCCCCeeEEEecCCCCCcEEEEEecCCcEEEEEecCCCCee-ee----eecc-----
Q 022111           78 DGQVIIWKEGNQNDWTQAHT-FNDHKSSVNSIAWAPHELGLSLACGSSDGNISVFTATADGGWD-TT----RIDQ-----  146 (302)
Q Consensus        78 D~~i~iwd~~~~~~~~~~~~-~~~h~~~i~~l~~~pd~~~~~l~sg~~d~~v~~~~~~~~~~~~-~~----~~~~-----  146 (302)
                      +++|.+||+.+.   +.+.+ +.. .+ ...+.+.|+. ...+++.+.|+.+.+++....+... ..    .+..     
T Consensus       130 ~~~v~v~d~~~~---~~~~~~i~~-~~-~~~v~~~p~~-~~~~~~~~~dg~~~~v~~~~~g~~~~~~~~~~~~~~~~~~~  203 (361)
T 2oiz_A          130 ATSIGIVDVAKG---DYVEDVTAA-AG-CWSVIPQPNR-PRSFMTICGDGGLLTINLGEDGKVASQSRSKQMFSVKDDPI  203 (361)
T ss_dssp             SEEEEEEETTTT---EEEEEEGGG-TT-EEEEEECTTS-SSEEEEEETTSSEEEEEECTTSSEEEEEECCCCSCTTTSCB
T ss_pred             CCeEEEEECCCC---cEEEEEecC-CC-cceeEEcCCC-CeeEEEECCCCcEEEEEECCCCcEeeeccccceEcCCCCce
Confidence            689999999765   24444 432 11 1224556663 2467777888888888775433221 00    0000     


Q ss_pred             --------------cCCCCeEEEEeCCCCC-------------------CCceeecccCCCceeEE-Eee----------
Q 022111          147 --------------AHPVGVTSVSWAPAMA-------------------PGALVGLGLLDPVQKLA-SCG----------  182 (302)
Q Consensus       147 --------------~h~~~v~~~~~~~~~~-------------------~~~~~~~~~~~~~~~l~-s~~----------  182 (302)
                                    .+...+..+.+.....                   +.....+.+.++++.+. +..          
T Consensus       204 ~~~~~~~g~~~~~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~~~a~~~dg~~lyv~~~~~~~~~~~~~  283 (361)
T 2oiz_A          204 FIAPALDKDKAHFVSYYGNVYSADFSGDEVKVDGPWSLLNDEDKAKNWVPGGYNLVGLHRASGRMYVFMHPDGKEGTHKF  283 (361)
T ss_dssp             CSCCEECSSEEEEEBTTSEEEEEECSSSSCEEEEEEESCCHHHHHTTCEECCSSCEEEETTTTEEEEEEESSCCTTCTTC
T ss_pred             EEEecccCCEEEEEeCCCeEEEEEecCCCceecccccccCccccccccccCCeeEEEEecCCCeEEEEEccCCCcccccC
Confidence                          0011122222211100                   00000011223334443 333          


Q ss_pred             CCCcEEEEEEecCccccccccccccCCCceeEEEeeCCCCCCccEEEEEecCCeEEEEEeccCCcceeeeeeccCCCcEE
Q 022111          183 CDNTVKVWKMYNGIWKMDCFPALQMHSDWVRSVAWAPNLGLPKSTIASASQDGTVVIWTCAKEGEQWEGRVLKDFKTPVW  262 (302)
Q Consensus       183 ~D~~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~~~~~v~  262 (302)
                      ..+.|.+||+.+.    +.+.++..+.  +.+|+|+||+    ++|++++. ++|.+||..+...... ..........+
T Consensus       284 ~~~~v~viD~~t~----~~v~~i~~~~--p~~ia~spdg----~~l~v~n~-~~v~v~D~~t~~l~~~-~~i~~~G~~P~  351 (361)
T 2oiz_A          284 PAAEIWVMDTKTK----QRVARIPGRD--ALSMTIDQQR----NLMLTLDG-GNVNVYDISQPEPKLL-RTIEGAAEASL  351 (361)
T ss_dssp             CCSEEEEEETTTT----EEEEEEECTT--CCEEEEETTT----TEEEEECS-SCEEEEECSSSSCEEE-EEETTSCSSEE
T ss_pred             CCceEEEEECCCC----cEEEEEecCC--eeEEEECCCC----CEEEEeCC-CeEEEEECCCCcceee-EEeccCCCCcE
Confidence            1347999998776    3445555555  8999999996    67777776 9999999876410111 12234456688


Q ss_pred             EEEEccCCC
Q 022111          263 SVSWSLTGN  271 (302)
Q Consensus       263 ~~~~spdg~  271 (302)
                      .++++|||+
T Consensus       352 ~~~~~p~G~  360 (361)
T 2oiz_A          352 QVQFHPVGG  360 (361)
T ss_dssp             EEEECCCSC
T ss_pred             EEEecCCCC
Confidence            899999985

>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}

Probab=99.41  E-value=1.7e-10  Score=110.57  Aligned_cols=253  Identities=14%  Similarity=0.064  Sum_probs=146.0

Q ss_pred             ccccceeEEEEccCCCEEEEeeCC-----CcEEEEeecCCCceEEEEecCcccCeEEEEeeCCCCCCEEEEEeCCCe---
Q 022111            9 GHEDTVHDVAMDFYGKRLATASSD-----SSIKIIGLSNSASQHLATLKGHRGPVWQVAWAHPKFGSILASCSYDGQ---   80 (302)
Q Consensus         9 ~h~~~v~~~~~s~~~~~l~s~~~d-----~~v~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~s~D~~---   80 (302)
                      +|...+..++|||||++||.++.+     .+|++||+.++..  +. ...+...+..++|++  + +.|+.++.|+.   
T Consensus       160 ~~~~~~~~~~~SPDG~~la~~~~~~G~e~~~i~v~dl~tg~~--~~-~~~~~~~~~~~~wsp--D-~~l~~~~~~~~~~~  233 (741)
T 1yr2_A          160 DGATALDAWAASDDGRLLAYSVQDGGSDWRTVKFVGVADGKP--LA-DELKWVKFSGLAWLG--N-DALLYSRFAEPKEG  233 (741)
T ss_dssp             ---EEEEEEEECTTSSEEEEEEEETTCSEEEEEEEETTTCCE--EE-EEEEEEESCCCEEST--T-SEEEEEECCCC---
T ss_pred             CCCEEEEeEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCC--CC-ccCCCceeccEEEEC--C-CEEEEEEecCcccc
Confidence            455578889999999999877654     4699999876432  22 111222235788986  3 66777766554   


Q ss_pred             -----------EEEEEcCCCCc-eeEEEEecCCCCCeeEEEecCCCCCcEEEEEecCC-----cEEEEEecCCCCee-ee
Q 022111           81 -----------VIIWKEGNQND-WTQAHTFNDHKSSVNSIAWAPHELGLSLACGSSDG-----NISVFTATADGGWD-TT  142 (302)
Q Consensus        81 -----------i~iwd~~~~~~-~~~~~~~~~h~~~i~~l~~~pd~~~~~l~sg~~d~-----~v~~~~~~~~~~~~-~~  142 (302)
                                 |.+|++.+... ...+.....+...+..+.|+||  |++|+..+.++     .|.+||+.... .. ..
T Consensus       234 ~~~~~~~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~~SpD--G~~l~~~~~~~~~~~~~l~~~d~~~~~-~~~~~  310 (741)
T 1yr2_A          234 QAFQALNYNQTVWLHRLGTPQSADQPVFATPELPKRGHGASVSSD--GRWVVITSSEGTDPVNTVHVARVTNGK-IGPVT  310 (741)
T ss_dssp             -----CCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTT--SCEEEEEEECTTCSCCEEEEEEEETTE-ECCCE
T ss_pred             cccccCCCCCEEEEEECCCCchhCEEEeccCCCCeEEEEEEECCC--CCEEEEEEEccCCCcceEEEEECCCCC-CcccE
Confidence                       88888865431 1223222333345889999998  66777666543     78888886431 01 12


Q ss_pred             eecccCCCCeEEEEeCCCCCCCceeecccCCCceeEEEeeC----CCcEEEEEEecCccccccccccccCCCceeEEEee
Q 022111          143 RIDQAHPVGVTSVSWAPAMAPGALVGLGLLDPVQKLASCGC----DNTVKVWKMYNGIWKMDCFPALQMHSDWVRSVAWA  218 (302)
Q Consensus       143 ~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~----D~~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~~~  218 (302)
                      .+. .+...+.... +|+              ++.|+..+.    ...|.+||+.++. . .....+..+...+.+++|+
T Consensus       311 ~l~-~~~~~~~~~~-~~d--------------g~~l~~~s~~~~~~~~l~~~d~~~~~-~-~~~~l~~~~~~~l~~~~~~  372 (741)
T 1yr2_A          311 ALI-PDLKAQWDFV-DGV--------------GDQLWFVSGDGAPLKKIVRVDLSGST-P-RFDTVVPESKDNLESVGIA  372 (741)
T ss_dssp             EEE-CSSSSCEEEE-EEE--------------TTEEEEEECTTCTTCEEEEEECSSSS-C-EEEEEECCCSSEEEEEEEE
T ss_pred             Eec-CCCCceEEEE-ecc--------------CCEEEEEECCCCCCCEEEEEeCCCCc-c-ccEEEecCCCCeEEEEEEE
Confidence            222 2223333332 243              345555444    3458889887631 0 0111123345567778887


Q ss_pred             CCCCCCccEEEEEecCCeEEEEEeccCCcceeeeeeccCCCcEEEEEEccCCCEEEEe-cC---C-ceEEeeecCCceEE
Q 022111          219 PNLGLPKSTIASASQDGTVVIWTCAKEGEQWEGRVLKDFKTPVWSVSWSLTGNLLAVA-DA---N-NVTLWKEAVDGEWQ  293 (302)
Q Consensus       219 p~~~~~~~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~la~~-~~---d-~i~~w~~~~~~~~~  293 (302)
                      .     +..+++...|+..+||.+...+.. ...+.......+..++++|+++.|+.. ++   . .|.+|+... +...
T Consensus       373 ~-----~~lv~~~~~dg~~~l~~~~~~g~~-~~~l~~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~t-g~~~  445 (741)
T 1yr2_A          373 G-----NRLFASYIHDAKSQVLAFDLDGKP-AGAVSLPGIGSASGLSGRPGDRHAYLSFSSFTQPATVLALDPAT-AKTT  445 (741)
T ss_dssp             B-----TEEEEEEEETTEEEEEEEETTSCE-EEECBCSSSCEEEEEECCBTCSCEEEEEEETTEEEEEEEEETTT-TEEE
T ss_pred             C-----CEEEEEEEECCEEEEEEEeCCCCc-eeeccCCCCeEEEEeecCCCCCEEEEEEcCCCCCCEEEEEECCC-CcEE
Confidence            2     367889999999888877532221 112212224568899999999766533 21   2 588888753 4444


Q ss_pred             Ee
Q 022111          294 QV  295 (302)
Q Consensus       294 ~~  295 (302)
                      ..
T Consensus       446 ~l  447 (741)
T 1yr2_A          446 PW  447 (741)
T ss_dssp             EC
T ss_pred             EE
Confidence            43

>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*

Probab=99.38  E-value=2.2e-10  Score=109.25  Aligned_cols=235  Identities=10%  Similarity=0.056  Sum_probs=137.7

Q ss_pred             cCCCEEEEeeCC-Cc--EEEEeec--CCCceEEEE---e-cCcccCeEEEEeeCCCCCCEEEEEeCCC-----eEEEEEc
Q 022111           21 FYGKRLATASSD-SS--IKIIGLS--NSASQHLAT---L-KGHRGPVWQVAWAHPKFGSILASCSYDG-----QVIIWKE   86 (302)
Q Consensus        21 ~~~~~l~s~~~d-~~--v~lw~~~--~~~~~~~~~---~-~~h~~~v~~v~~~~~~~~~~l~s~s~D~-----~i~iwd~   86 (302)
                      |+|++++-...+ +.  -.||-..  .+..+.+..   + .+|...+..++|+|+  |++||.++.++     +|++||+
T Consensus        81 ~dG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~lld~~~l~~~~~~~~~~~~~SPD--g~~la~~~~~~G~~~~~i~v~d~  158 (710)
T 2xdw_A           81 KKGKRYFYFYNTGLQNQRVLYVQDSLEGEARVFLDPNILSDDGTVALRGYAFSED--GEYFAYGLSASGSDWVTIKFMKV  158 (710)
T ss_dssp             EETTEEEEEEECSSCSSCEEEEESSTTSCCEEEECGGGGCTTSCEEEEEEEECTT--SSEEEEEEEETTCSCEEEEEEET
T ss_pred             EECCEEEEEEEcCCceEEEEEEEcCCCCCcEEEECHHHhccCCCEEEEEEEECCC--CCEEEEEEcCCCCceEEEEEEEC
Confidence            788877644432 22  2455443  222222211   1 235456788999864  88888765543     8999999


Q ss_pred             CCCCceeEEEEecCCCCCeeEEEecCCCCCcEEEEEecCCc----------------EEEEEecCCCCeeeeeec-ccCC
Q 022111           87 GNQNDWTQAHTFNDHKSSVNSIAWAPHELGLSLACGSSDGN----------------ISVFTATADGGWDTTRID-QAHP  149 (302)
Q Consensus        87 ~~~~~~~~~~~~~~h~~~i~~l~~~pd~~~~~l~sg~~d~~----------------v~~~~~~~~~~~~~~~~~-~~h~  149 (302)
                      .++... . ..+.  ...+..++|+||  |..|+.++.++.                |++|++.+.......... ..|.
T Consensus       159 ~tg~~~-~-~~~~--~~~~~~~~wspD--g~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~t~~~~~~~v~~~~~~~  232 (710)
T 2xdw_A          159 DGAKEL-P-DVLE--RVKFSCMAWTHD--GKGMFYNAYPQQDGKSDGTETSTNLHQKLYYHVLGTDQSEDILCAEFPDEP  232 (710)
T ss_dssp             TTTEEE-E-EEEE--EECSCCEEECTT--SSEEEEEECCCCSSCCSSSCCCCCCCCEEEEEETTSCGGGCEEEECCTTCT
T ss_pred             CCCCCC-c-cccc--CcccceEEEEeC--CCEEEEEEECCccccccccccccCCCCEEEEEECCCCcccceEEeccCCCC
Confidence            775321 1 1222  223678999998  668888887765                889988643221111111 1244


Q ss_pred             CCeEEEEeCCCCCCCceeecccCCCceeEEEeeC-----CCcEEEEEEec------CccccccccccccCCCceeEEEee
Q 022111          150 VGVTSVSWAPAMAPGALVGLGLLDPVQKLASCGC-----DNTVKVWKMYN------GIWKMDCFPALQMHSDWVRSVAWA  218 (302)
Q Consensus       150 ~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~-----D~~v~iwd~~~------~~~~~~~~~~~~~h~~~v~~v~~~  218 (302)
                      ..+..+.|+|++              ++|+..+.     +..|++||+.+      +..   ....+..+...+.. .|+
T Consensus       233 ~~~~~~~~SpDg--------------~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~---~~~~l~~~~~~~~~-~~s  294 (710)
T 2xdw_A          233 KWMGGAELSDDG--------------RYVLLSIREGCDPVNRLWYCDLQQESNGITGIL---KWVKLIDNFEGEYD-YVT  294 (710)
T ss_dssp             TCEEEEEECTTS--------------CEEEEEEECSSSSCCEEEEEEGGGSSSSSCSSC---CCEEEECSSSSCEE-EEE
T ss_pred             eEEEEEEEcCCC--------------CEEEEEEEccCCCccEEEEEECcccccccCCcc---ceEEeeCCCCcEEE-EEe
Confidence            557788999874              56655543     56899999875      321   12334455555555 488


Q ss_pred             CCCCCCccEEEEEec-C---CeEEEEEeccCCc-ceeeeeeccCC-CcEEEEEEccCCCEEEEecCC-c--eEEeee
Q 022111          219 PNLGLPKSTIASASQ-D---GTVVIWTCAKEGE-QWEGRVLKDFK-TPVWSVSWSLTGNLLAVADAN-N--VTLWKE  286 (302)
Q Consensus       219 p~~~~~~~~l~s~s~-D---~~i~iwd~~~~~~-~~~~~~~~~~~-~~v~~~~~spdg~~la~~~~d-~--i~~w~~  286 (302)
                      |++    ..|+..+. +   ..|.+||+..... .+. .+..... ..+.+++|++++.+++++..+ .  |.+|+.
T Consensus       295 ~dg----~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~-~l~~~~~~~~~~~~~~~~~~~lv~~~~~~g~~~l~~~~~  366 (710)
T 2xdw_A          295 NEG----TVFTFKTNRHSPNYRLINIDFTDPEESKWK-VLVPEHEKDVLEWVACVRSNFLVLCYLHDVKNTLQLHDL  366 (710)
T ss_dssp             EET----TEEEEEECTTCTTCEEEEEETTSCCGGGCE-EEECCCSSCEEEEEEEETTTEEEEEEEETTEEEEEEEET
T ss_pred             ccC----CEEEEEECCCCCCCEEEEEeCCCCCcccce-eccCCCCCCeEEEEEEEcCCEEEEEEEECCEEEEEEEEC
Confidence            885    44444443 3   3688888865321 122 2222222 358889999877788777666 3  555554

>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*

Probab=99.37  E-value=6.8e-09  Score=87.42  Aligned_cols=239  Identities=8%  Similarity=0.000  Sum_probs=153.3

Q ss_pred             ccceeEEEEccCCCEEEEeeCCCcEEEEeecCCCceEEEEecCcccCeEEEEeeCCCCCCEEEEEeCCCeEEEEEcCCCC
Q 022111           11 EDTVHDVAMDFYGKRLATASSDSSIKIIGLSNSASQHLATLKGHRGPVWQVAWAHPKFGSILASCSYDGQVIIWKEGNQN   90 (302)
Q Consensus        11 ~~~v~~~~~s~~~~~l~s~~~d~~v~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~s~D~~i~iwd~~~~~   90 (302)
                      ...+.+++++++++.+++...++.|..|+... ... ...+..+...+..+++.+  +++++++...++.|..||. ++.
T Consensus        56 ~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~g-~~~-~~~~~~~~~~~~~i~~~~--~g~l~v~~~~~~~i~~~d~-~g~  130 (299)
T 2z2n_A           56 DAKVMCLTISSDGEVWFTENAANKIGRITKKG-IIK-EYTLPNPDSAPYGITEGP--NGDIWFTEMNGNRIGRITD-DGK  130 (299)
T ss_dssp             TCCEEEEEECTTSCEEEEETTTTEEEEECTTS-CEE-EEECSSTTCCEEEEEECT--TSCEEEEETTTTEEEEECT-TCC
T ss_pred             cCceeeEEECCCCCEEEeCCCCCeEEEECCCC-cEE-EEeCCCcCCCceeeEECC--CCCEEEEecCCceEEEECC-CCC
Confidence            45688899999998888776688899998652 221 222333455688899865  3778777777889999987 332


Q ss_pred             ceeEEEEecCCCCCeeEEEecCCCCCcEEEEEecCCcEEEEEecCCCCeeeeeecccCCCCeEEEEeCCCCCCCceeecc
Q 022111           91 DWTQAHTFNDHKSSVNSIAWAPHELGLSLACGSSDGNISVFTATADGGWDTTRIDQAHPVGVTSVSWAPAMAPGALVGLG  170 (302)
Q Consensus        91 ~~~~~~~~~~h~~~i~~l~~~pd~~~~~l~sg~~d~~v~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~  170 (302)
                       . ...........+..+++.|+  +.++++...++.|..|+.  .+........ .+...+..+++.++          
T Consensus       131 -~-~~~~~~~~~~~~~~i~~~~~--g~l~v~~~~~~~i~~~~~--~g~~~~~~~~-~~~~~~~~i~~~~~----------  193 (299)
T 2z2n_A          131 -I-REYELPNKGSYPSFITLGSD--NALWFTENQNNAIGRITE--SGDITEFKIP-TPASGPVGITKGND----------  193 (299)
T ss_dssp             -E-EEEECSSTTCCEEEEEECTT--SCEEEEETTTTEEEEECT--TCCEEEEECS-STTCCEEEEEECTT----------
T ss_pred             -E-EEecCCCCCCCCceEEEcCC--CCEEEEeCCCCEEEEEcC--CCcEEEeeCC-CCCCcceeEEECCC----------
Confidence             1 11223334567899999887  556666666788888876  2222221111 22334566776654          


Q ss_pred             cCCCceeEEEeeCCCcEEEEEEecCccccccccccccCCCceeEEEeeCCCCCCccEEEEEecCCeEEEEEeccCCccee
Q 022111          171 LLDPVQKLASCGCDNTVKVWKMYNGIWKMDCFPALQMHSDWVRSVAWAPNLGLPKSTIASASQDGTVVIWTCAKEGEQWE  250 (302)
Q Consensus       171 ~~~~~~~l~s~~~D~~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~l~s~s~D~~i~iwd~~~~~~~~~  250 (302)
                          +.++++...++.|.+||. ++..  .. ..+..+...+.++++.|++    +..++...++.|..||...  . ..
T Consensus       194 ----g~l~v~~~~~~~i~~~~~-~g~~--~~-~~~~~~~~~~~~i~~~~~g----~l~v~~~~~~~i~~~d~~g--~-~~  258 (299)
T 2z2n_A          194 ----DALWFVEIIGNKIGRITT-SGEI--TE-FKIPTPNARPHAITAGAGI----DLWFTEWGANKIGRLTSNN--I-IE  258 (299)
T ss_dssp             ----SSEEEEETTTTEEEEECT-TCCE--EE-EECSSTTCCEEEEEECSTT----CEEEEETTTTEEEEEETTT--E-EE
T ss_pred             ----CCEEEEccCCceEEEECC-CCcE--EE-EECCCCCCCceeEEECCCC----CEEEeccCCceEEEECCCC--c-eE
Confidence                356666666788999998 4421  11 1122345678999999985    5566665788999999732  1 11


Q ss_pred             eeeeccCCCcEEEEEEccCCCEEEEecCCceEEeeec
Q 022111          251 GRVLKDFKTPVWSVSWSLTGNLLAVADANNVTLWKEA  287 (302)
Q Consensus       251 ~~~~~~~~~~v~~~~~spdg~~la~~~~d~i~~w~~~  287 (302)
                      ..........+.++++ ++|++.++...+++..++..
T Consensus       259 ~~~~~~~~~~~~~i~~-~~g~l~v~~~~~~l~~~~~~  294 (299)
T 2z2n_A          259 EYPIQIKSAEPHGICF-DGETIWFAMECDKIGKLTLI  294 (299)
T ss_dssp             EEECSSSSCCEEEEEE-CSSCEEEEETTTEEEEEEEC
T ss_pred             EEeCCCCCCccceEEe-cCCCEEEEecCCcEEEEEcC
Confidence            1112233456899999 99988877766678877754

>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}

Probab=99.37  E-value=3.2e-10  Score=95.65  Aligned_cols=232  Identities=13%  Similarity=0.036  Sum_probs=145.4

Q ss_pred             CCCEEEEeeCCCcEEEEeecCCCceEEEEecCcc-cCeEEEEeeCCCCCCEEEEEeCCCeEEEEEcCCCCceeEEEEecC
Q 022111           22 YGKRLATASSDSSIKIIGLSNSASQHLATLKGHR-GPVWQVAWAHPKFGSILASCSYDGQVIIWKEGNQNDWTQAHTFND  100 (302)
Q Consensus        22 ~~~~l~s~~~d~~v~lw~~~~~~~~~~~~~~~h~-~~v~~v~~~~~~~~~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~  100 (302)
                      .++.|++++.|+.|++||..+  ++.+.++..+. ..+.++.+.++  |++|+  +.++.|..||. ++.   .+.++..
T Consensus         4 ~~~~lv~~~~~~~v~~~d~~t--G~~~w~~~~~~~~~~~~~~~~pd--G~ilv--s~~~~V~~~d~-~G~---~~W~~~~   73 (276)
T 3no2_A            4 PQHLLVGGSGWNKIAIINKDT--KEIVWEYPLEKGWECNSVAATKA--GEILF--SYSKGAKMITR-DGR---ELWNIAA   73 (276)
T ss_dssp             CCEEEEECTTCSEEEEEETTT--TEEEEEEECCTTCCCCEEEECTT--SCEEE--ECBSEEEEECT-TSC---EEEEEEC
T ss_pred             CCcEEEeeCCCCEEEEEECCC--CeEEEEeCCCccCCCcCeEECCC--CCEEE--eCCCCEEEECC-CCC---EEEEEcC
Confidence            367899999999999999744  45666776655 46778888763  88888  45788999998 442   4455554


Q ss_pred             C-CCCeeEEEecCCCCCcEEEEEec-CCcEEEEEecCCCCee-eeeecc---cCCCCeEEEEeCCCCCCCceeecccCCC
Q 022111          101 H-KSSVNSIAWAPHELGLSLACGSS-DGNISVFTATADGGWD-TTRIDQ---AHPVGVTSVSWAPAMAPGALVGLGLLDP  174 (302)
Q Consensus       101 h-~~~i~~l~~~pd~~~~~l~sg~~-d~~v~~~~~~~~~~~~-~~~~~~---~h~~~v~~~~~~~~~~~~~~~~~~~~~~  174 (302)
                      + ...+.++.+.|+  |.++++.+. ++.+..++  ..+... ...+..   .+......+...              .+
T Consensus        74 ~~~~~~~~~~~~~d--G~~lv~~~~~~~~v~~vd--~~Gk~l~~~~~~~~~~~~~~~~~~v~~~--------------~~  135 (276)
T 3no2_A           74 PAGCEMQTARILPD--GNALVAWCGHPSTILEVN--MKGEVLSKTEFETGIERPHAQFRQINKN--------------KK  135 (276)
T ss_dssp             CTTCEEEEEEECTT--SCEEEEEESTTEEEEEEC--TTSCEEEEEEECCSCSSGGGSCSCCEEC--------------TT
T ss_pred             CCCccccccEECCC--CCEEEEecCCCCEEEEEe--CCCCEEEEEeccCCCCcccccccCceEC--------------CC
Confidence            4 346788889887  667887766 55555444  333211 111110   000111112222              34


Q ss_pred             ceeEEEeeCCCcEEEEEEecCccccccccccccCCCceeEEEeeCCCCCCccEEEEEecCCeEEEEEeccCCcceeeeee
Q 022111          175 VQKLASCGCDNTVKVWKMYNGIWKMDCFPALQMHSDWVRSVAWAPNLGLPKSTIASASQDGTVVIWTCAKEGEQWEGRVL  254 (302)
Q Consensus       175 ~~~l~s~~~D~~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~l~s~s~D~~i~iwd~~~~~~~~~~~~~  254 (302)
                      +.++++...++.|..||.. +..    +-.+... ....++...|++    +.+++++.++.|..+|..+.+..|+....
T Consensus       136 G~~lv~~~~~~~v~~~d~~-G~~----~w~~~~~-~~~~~~~~~~~g----~~~v~~~~~~~v~~~d~~tG~~~w~~~~~  205 (276)
T 3no2_A          136 GNYLVPLFATSEVREIAPN-GQL----LNSVKLS-GTPFSSAFLDNG----DCLVACGDAHCFVQLNLESNRIVRRVNAN  205 (276)
T ss_dssp             SCEEEEETTTTEEEEECTT-SCE----EEEEECS-SCCCEEEECTTS----CEEEECBTTSEEEEECTTTCCEEEEEEGG
T ss_pred             CCEEEEecCCCEEEEECCC-CCE----EEEEECC-CCccceeEcCCC----CEEEEeCCCCeEEEEeCcCCcEEEEecCC
Confidence            6789999999999999986 532    1222221 345667777774    77888888889999998755444432211


Q ss_pred             --cc-CCCcEEEEEEccCCCEEEEecC---------CceEEeeecCCce
Q 022111          255 --KD-FKTPVWSVSWSLTGNLLAVADA---------NNVTLWKEAVDGE  291 (302)
Q Consensus       255 --~~-~~~~v~~~~~spdg~~la~~~~---------d~i~~w~~~~~~~  291 (302)
                        .+ .-..+.+++..++|+++++...         +..++++...+|.
T Consensus       206 ~~~~~~l~~~~~~~~~~~G~i~v~~~~g~~~~~~~~~~~~~~~~~~~g~  254 (276)
T 3no2_A          206 DIEGVQLFFVAQLFPLQNGGLYICNWQGHDREAGKGKHPQLVEIDSEGK  254 (276)
T ss_dssp             GSBSCCCSEEEEEEECTTSCEEEEEECTTCTTGGGSCCCSEEEECTTSB
T ss_pred             CCCCccccccccceEcCCCCEEEEeccCccccccccCCceEEEECCCCC
Confidence              11 1123678888999999988732         2346666644555

>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}

Probab=99.35  E-value=2e-10  Score=109.30  Aligned_cols=239  Identities=12%  Similarity=0.016  Sum_probs=140.9

Q ss_pred             ccCCCEEEEeeCCC---cEEEEeec--CCCceEEEEe----cCcccCeEEEEeeCCCCCCEEE-----EEeCCCeEEEEE
Q 022111           20 DFYGKRLATASSDS---SIKIIGLS--NSASQHLATL----KGHRGPVWQVAWAHPKFGSILA-----SCSYDGQVIIWK   85 (302)
Q Consensus        20 s~~~~~l~s~~~d~---~v~lw~~~--~~~~~~~~~~----~~h~~~v~~v~~~~~~~~~~l~-----s~s~D~~i~iwd   85 (302)
                      +++|++++-...++   .-.||-..  .+..+.+...    .+|...+..++|+|+  |++||     +|+.+.+|++||
T Consensus        76 ~~dG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~d~~~~a~~~~~~~~~~~~SPD--G~~la~~~~~~G~~~~~i~v~d  153 (695)
T 2bkl_A           76 SRRNGRFFYVRTHKDKEKAILYWRQGESGQEKVLLDPNGWSKDGTVSLGTWAVSWD--GKKVAFAQKPNAADEAVLHVID  153 (695)
T ss_dssp             EEETTEEEEEEECTTCSSCEEEEEESTTSCCEEEECGGGSSSSSCEEEEEEEECTT--SSEEEEEEEETTCSCCEEEEEE
T ss_pred             EEECCEEEEEEEcCCCeEEEEEEEcCCCCCcEEEEchHHhccCCCEEEEEEEECCC--CCEEEEEECCCCCceEEEEEEE
Confidence            47888887666544   35566553  2222222221    246657889999864  88888     455567899999


Q ss_pred             cCCCCceeEEEEecCCCCCeeEEEecCCCCCcEEEEEecCCc-------------EEEEEecCCCCeeeeee-cccCCCC
Q 022111           86 EGNQNDWTQAHTFNDHKSSVNSIAWAPHELGLSLACGSSDGN-------------ISVFTATADGGWDTTRI-DQAHPVG  151 (302)
Q Consensus        86 ~~~~~~~~~~~~~~~h~~~i~~l~~~pd~~~~~l~sg~~d~~-------------v~~~~~~~~~~~~~~~~-~~~h~~~  151 (302)
                      +.++.... ...+..  .....++|+||  |..|+.++.|..             |++|++.+......... ...|...
T Consensus       154 l~tg~~~~-~~~~~~--~~~~~~~wspD--g~~l~~~~~d~~~~~~~~~~~~~~~v~~~~l~t~~~~~~lv~~~~~~~~~  228 (695)
T 2bkl_A          154 VDSGEWSK-VDVIEG--GKYATPKWTPD--SKGFYYEWLPTDPSIKVDERPGYTTIRYHTLGTEPSKDTVVHERTGDPTT  228 (695)
T ss_dssp             TTTCCBCS-SCCBSC--CTTCCCEECTT--SSEEEEEECCCCTTSCGGGGGGGCEEEEEETTSCGGGCEEEECCCCCTTC
T ss_pred             CCCCCCcC-CcccCc--ccccceEEecC--CCEEEEEEecCCCCCccccCCCCCEEEEEECCCCchhceEEEecCCCCEE
Confidence            98764210 011111  11268999998  678888888776             99998865432111111 1134456


Q ss_pred             eEEEEeCCCCCCCceeecccCCCceeEEEeeCCC----cEEEEEEecCccccccccccccCCCceeEEEeeCCCCCCccE
Q 022111          152 VTSVSWAPAMAPGALVGLGLLDPVQKLASCGCDN----TVKVWKMYNGIWKMDCFPALQMHSDWVRSVAWAPNLGLPKST  227 (302)
Q Consensus       152 v~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~D~----~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~  227 (302)
                      +..+.|+|++              ++|+..+.++    .|+++|..++.     ...+..+...+....| |++    ..
T Consensus       229 ~~~~~~SpDG--------------~~l~~~~~~~~~~~~l~~~~~~~~~-----~~~l~~~~~~~~~~~~-~~g----~l  284 (695)
T 2bkl_A          229 FLQSDLSRDG--------------KYLFVYILRGWSENDVYWKRPGEKD-----FRLLVKGVGAKYEVHA-WKD----RF  284 (695)
T ss_dssp             EEEEEECTTS--------------CCEEEEEEETTTEEEEEEECTTCSS-----CEEEEECSSCCEEEEE-ETT----EE
T ss_pred             EEEEEECCCC--------------CEEEEEEeCCCCceEEEEEcCCCCc-----eEEeecCCCceEEEEe-cCC----cE
Confidence            7889999874              5666665544    45555432221     2234445555666666 554    44


Q ss_pred             EEEEe---cCCeEEEEEeccCCc-ceeeeeeccC-CCcEEEEEEccCCCEEEEecCC-ceEEeeecCCce
Q 022111          228 IASAS---QDGTVVIWTCAKEGE-QWEGRVLKDF-KTPVWSVSWSLTGNLLAVADAN-NVTLWKEAVDGE  291 (302)
Q Consensus       228 l~s~s---~D~~i~iwd~~~~~~-~~~~~~~~~~-~~~v~~~~~spdg~~la~~~~d-~i~~w~~~~~~~  291 (302)
                      +++..   .++.|.+||+..... .|. .+.... ...+.+++|+ ++.+++++..+ ..+||.....|.
T Consensus       285 ~~~s~~~~~~~~l~~~d~~~~~~~~~~-~l~~~~~~~~l~~~~~~-~~~lv~~~~~dg~~~l~~~~~~g~  352 (695)
T 2bkl_A          285 YVLTDEGAPRQRVFEVDPAKPARASWK-EIVPEDSSASLLSVSIV-GGHLSLEYLKDATSEVRVATLKGK  352 (695)
T ss_dssp             EEEECTTCTTCEEEEEBTTBCSGGGCE-EEECCCSSCEEEEEEEE-TTEEEEEEEETTEEEEEEEETTCC
T ss_pred             EEEECCCCCCCEEEEEeCCCCCccCCe-EEecCCCCCeEEEEEEE-CCEEEEEEEECCEEEEEEEeCCCC
Confidence            44444   257899999865321 122 222332 4457888998 66777777766 577776653343

>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}

Probab=99.34  E-value=5.1e-10  Score=94.95  Aligned_cols=206  Identities=13%  Similarity=0.083  Sum_probs=128.9

Q ss_pred             EEecCcccCeEEEEeeCCCCCC-EEEEEeCCCeEEEEEcCCCCceeEEEEecCCCCCeeEEEecCCCCCcEEEEEecCCc
Q 022111           49 ATLKGHRGPVWQVAWAHPKFGS-ILASCSYDGQVIIWKEGNQNDWTQAHTFNDHKSSVNSIAWAPHELGLSLACGSSDGN  127 (302)
Q Consensus        49 ~~~~~h~~~v~~v~~~~~~~~~-~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~h~~~i~~l~~~pd~~~~~l~sg~~d~~  127 (302)
                      ..+..+.....+++|+++  ++ +++++..++.|..|+....     ...+..+...+.+++++|+  +.++++...++.
T Consensus        21 ~~l~~~~~~~eg~~~d~~--g~~l~~~~~~~~~i~~~~~~~~-----~~~~~~~~~~~~~l~~~~d--g~l~v~~~~~~~   91 (296)
T 3e5z_A           21 RRLADGFTWTEGPVYVPA--RSAVIFSDVRQNRTWAWSDDGQ-----LSPEMHPSHHQNGHCLNKQ--GHLIACSHGLRR   91 (296)
T ss_dssp             EEEECCCSSEEEEEEEGG--GTEEEEEEGGGTEEEEEETTSC-----EEEEESSCSSEEEEEECTT--CCEEEEETTTTE
T ss_pred             EEEecCCccccCCeEeCC--CCEEEEEeCCCCEEEEEECCCC-----eEEEECCCCCcceeeECCC--CcEEEEecCCCe
Confidence            344455556778999864  66 7888889999999998653     2344556778999999997  667777666789


Q ss_pred             EEEEEecCCCCeeee-eeccc-CCCCeEEEEeCCCCCCCceeecccCCCceeEEE----eeCC-----------CcEEEE
Q 022111          128 ISVFTATADGGWDTT-RIDQA-HPVGVTSVSWAPAMAPGALVGLGLLDPVQKLAS----CGCD-----------NTVKVW  190 (302)
Q Consensus       128 v~~~~~~~~~~~~~~-~~~~~-h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~s----~~~D-----------~~v~iw  190 (302)
                      |.+|+..+.. .... ..... ....+..++++|+              +.++++    |+.+           +.-.||
T Consensus        92 i~~~d~~~g~-~~~~~~~~~~~~~~~~~~i~~d~~--------------G~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~  156 (296)
T 3e5z_A           92 LERQREPGGE-WESIADSFEGKKLNSPNDVCLAPD--------------GSLWFSDPTYGIDKPEEGYGGEMELPGRWVF  156 (296)
T ss_dssp             EEEECSTTCC-EEEEECEETTEECCCCCCEEECTT--------------SCEEEEECSHHHHCGGGSSCCCCCSSSCEEE
T ss_pred             EEEEcCCCCc-EEEEeeccCCCCCCCCCCEEECCC--------------CCEEEECCccccccccccccccccCCCcEEE
Confidence            9999874332 2211 10001 1123445666664              456666    3210           122455


Q ss_pred             EEecCccccccccccccCCCceeEEEeeCCCCCCccEEEEEecCCeEEEEEeccCCcc-eeeeeeccCCCcEEEEEEccC
Q 022111          191 KMYNGIWKMDCFPALQMHSDWVRSVAWAPNLGLPKSTIASASQDGTVVIWTCAKEGEQ-WEGRVLKDFKTPVWSVSWSLT  269 (302)
Q Consensus       191 d~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~l~s~s~D~~i~iwd~~~~~~~-~~~~~~~~~~~~v~~~~~spd  269 (302)
                      .+.... .   ...+..+....+.++|+|++    +.+++.+.++.|++|++...+.. ............+.+++++++
T Consensus       157 ~~~~~g-~---~~~~~~~~~~~~gi~~s~dg----~~lv~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~p~~i~~d~~  228 (296)
T 3e5z_A          157 RLAPDG-T---LSAPIRDRVKPNGLAFLPSG----NLLVSDTGDNATHRYCLNARGETEYQGVHFTVEPGKTDGLRVDAG  228 (296)
T ss_dssp             EECTTS-C---EEEEECCCSSEEEEEECTTS----CEEEEETTTTEEEEEEECSSSCEEEEEEEECCSSSCCCSEEEBTT
T ss_pred             EECCCC-C---EEEeecCCCCCccEEECCCC----CEEEEeCCCCeEEEEEECCCCcCcCCCeEeeCCCCCCCeEEECCC
Confidence            544321 1   12233455667899999996    56688888999999998632221 111122222344678999999


Q ss_pred             CCEEEEecCCceEEeeec
Q 022111          270 GNLLAVADANNVTLWKEA  287 (302)
Q Consensus       270 g~~la~~~~d~i~~w~~~  287 (302)
                      |+++++. .++|.+|+..
T Consensus       229 G~l~v~~-~~~v~~~~~~  245 (296)
T 3e5z_A          229 GLIWASA-GDGVHVLTPD  245 (296)
T ss_dssp             SCEEEEE-TTEEEEECTT
T ss_pred             CCEEEEc-CCeEEEECCC
Confidence            9987777 5589999864

>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*

Probab=99.29  E-value=1.2e-10  Score=102.48  Aligned_cols=177  Identities=11%  Similarity=0.037  Sum_probs=120.5

Q ss_pred             CeEEEEeeCCCCCCEEEEEeCCCeEEEEEcCCCC--------ceeEEEEecCCCCCeeEEEecCCCCCcEEEEEecCCcE
Q 022111           57 PVWQVAWAHPKFGSILASCSYDGQVIIWKEGNQN--------DWTQAHTFNDHKSSVNSIAWAPHELGLSLACGSSDGNI  128 (302)
Q Consensus        57 ~v~~v~~~~~~~~~~l~s~s~D~~i~iwd~~~~~--------~~~~~~~~~~h~~~i~~l~~~pd~~~~~l~sg~~d~~v  128 (302)
                      .+..+++++.  ..++++|+.++ +++|+..+..        ...+.... .+.. |..++|  |  +..|+++ .++.|
T Consensus        39 ~~nlLais~~--~gll~a~~~~~-l~v~~~~~l~~~~~~~~~~~~~~~~~-~lp~-V~~l~f--d--~~~L~v~-~~~~l  108 (388)
T 1xip_A           39 SLQNLDISNS--KSLFVAASGSK-AVVGELQLLRDHITSDSTPLTFKWEK-EIPD-VIFVCF--H--GDQVLVS-TRNAL  108 (388)
T ss_dssp             CCBCEEEETT--TTEEEEEETTE-EEEEEHHHHHHHHHSSSCCCCCSEEE-ECTT-EEEEEE--E--TTEEEEE-ESSEE
T ss_pred             cccEEEEcCC--CCEEEEeCCCE-EEEEEhhHhhhhhccccccccceEEe-eCCC-eeEEEE--C--CCEEEEE-cCCcE
Confidence            5778888764  56888988874 5669864321        01111122 2555 999999  5  5678888 88999


Q ss_pred             EEEEecCCCCeeeeeecccCCCCeEEEEeCCCCCCCceeecccCCCceeEEEeeCCCcEEEEEEecCccccccccccccC
Q 022111          129 SVFTATADGGWDTTRIDQAHPVGVTSVSWAPAMAPGALVGLGLLDPVQKLASCGCDNTVKVWKMYNGIWKMDCFPALQMH  208 (302)
Q Consensus       129 ~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~D~~v~iwd~~~~~~~~~~~~~~~~h  208 (302)
                      ++||+.......  .. ..|...+.++.+.+.                .+++++.||.|.+||++++...        .+
T Consensus       109 ~v~dv~sl~~~~--~~-~~~~~~v~~i~~~~p----------------~~av~~~dG~L~v~dl~~~~~~--------~~  161 (388)
T 1xip_A          109 YSLDLEELSEFR--TV-TSFEKPVFQLKNVNN----------------TLVILNSVNDLSALDLRTKSTK--------QL  161 (388)
T ss_dssp             EEEESSSTTCEE--EE-EECSSCEEEEEECSS----------------EEEEEETTSEEEEEETTTCCEE--------EE
T ss_pred             EEEEchhhhccC--cc-ceeecceeeEEecCC----------------CEEEEECCCCEEEEEccCCccc--------cc
Confidence            999987543222  12 245666777766531                3888999999999999865311        14


Q ss_pred             CCceeEEEeeCCCCCCccEEEEEecCCeEEEEEeccCCcceeeee-----ec---cCCCcEEEEEEccCCCEEEEe
Q 022111          209 SDWVRSVAWAPNLGLPKSTIASASQDGTVVIWTCAKEGEQWEGRV-----LK---DFKTPVWSVSWSLTGNLLAVA  276 (302)
Q Consensus       209 ~~~v~~v~~~p~~~~~~~~l~s~s~D~~i~iwd~~~~~~~~~~~~-----~~---~~~~~v~~~~~spdg~~la~~  276 (302)
                      ...|.|++|||+|      ++.|..||++++|+...........+     +.   ++...|.+|.|.+++.++++-
T Consensus       162 ~~~Vs~v~WSpkG------~~vg~~dg~i~~~~~~~~~~~~k~~I~~Pp~~~~~~~~~~~V~sI~wl~~~~flv~y  231 (388)
T 1xip_A          162 AQNVTSFDVTNSQ------LAVLLKDRSFQSFAWRNGEMEKQFEFSLPSELEELPVEEYSPLSVTILSPQDFLAVF  231 (388)
T ss_dssp             EESEEEEEECSSE------EEEEETTSCEEEEEEETTEEEEEEEECCCHHHHTSCTTTSEEEEEEESSSSEEEEEE
T ss_pred             cCCceEEEEcCCc------eEEEEcCCcEEEEcCCCccccccceecCCcccccccCCCeeEEEEEEecCCeEEEEE
Confidence            5679999999984      78899999999998864320001112     12   245779999999999988763

>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}

Probab=99.29  E-value=5.5e-08  Score=81.82  Aligned_cols=246  Identities=9%  Similarity=-0.022  Sum_probs=154.8

Q ss_pred             ccceeEEEEccCCCEEEEeeCCCcEEEEeecCCCceEEEEecCcccCeEEEEeeCCCCCCEEEEEeCCCeEEEEEcCCCC
Q 022111           11 EDTVHDVAMDFYGKRLATASSDSSIKIIGLSNSASQHLATLKGHRGPVWQVAWAHPKFGSILASCSYDGQVIIWKEGNQN   90 (302)
Q Consensus        11 ~~~v~~~~~s~~~~~l~s~~~d~~v~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~s~D~~i~iwd~~~~~   90 (302)
                      ...+.+++++++|+.+++...++.|.+|+.. ..... ..+..+...+..+++.+  +++++++...++.|..+|.. +.
T Consensus        19 ~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~-~~~~~-~~~~~~~~~~~~i~~~~--~g~l~v~~~~~~~v~~~d~~-g~   93 (300)
T 2qc5_A           19 DSGPYGITSSEDGKVWFTQHKANKISSLDQS-GRIKE-FEVPTPDAKVMCLIVSS--LGDIWFTENGANKIGKLSKK-GG   93 (300)
T ss_dssp             TCCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEE-EECSSTTCCEEEEEECT--TSCEEEEETTTTEEEEECTT-SC
T ss_pred             CCCcceeeECCCCCEEEEcCCCCeEEEECCC-CceEE-EECCCCCCcceeEEECC--CCCEEEEecCCCeEEEECCC-CC
Confidence            4577889999999988877678999999876 32222 22333445688898864  37777776668889999876 32


Q ss_pred             ceeEEEEecCCCCCeeEEEecCCCCCcEEEEEecCCcEEEEEecCCCCeeeeeecccCCCCeEEEEeCCCCCCCceeecc
Q 022111           91 DWTQAHTFNDHKSSVNSIAWAPHELGLSLACGSSDGNISVFTATADGGWDTTRIDQAHPVGVTSVSWAPAMAPGALVGLG  170 (302)
Q Consensus        91 ~~~~~~~~~~h~~~i~~l~~~pd~~~~~l~sg~~d~~v~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~  170 (302)
                       . ...........+.++++.|+  +.++++...++.|..++..  +......+. .....+..+.+.++          
T Consensus        94 -~-~~~~~~~~~~~~~~i~~~~~--g~l~v~~~~~~~i~~~~~~--g~~~~~~~~-~~~~~~~~i~~d~~----------  156 (300)
T 2qc5_A           94 -F-TEYPLPQPDSGPYGITEGLN--GDIWFTQLNGDRIGKLTAD--GTIYEYDLP-NKGSYPAFITLGSD----------  156 (300)
T ss_dssp             -E-EEEECSSTTCCEEEEEECST--TCEEEEETTTTEEEEECTT--SCEEEEECS-STTCCEEEEEECTT----------
T ss_pred             -e-EEecCCCCCCCCccceECCC--CCEEEEccCCCeEEEECCC--CCEEEccCC-CCCCCceeEEECCC----------
Confidence             2 12223323467889999876  5566666667788888754  222212111 12334566776654          


Q ss_pred             cCCCceeEEEeeCCCcEEEEEEecCccccccccccccCCCceeEEEeeCCCCCCccEEEEEecCCeEEEEEeccCCccee
Q 022111          171 LLDPVQKLASCGCDNTVKVWKMYNGIWKMDCFPALQMHSDWVRSVAWAPNLGLPKSTIASASQDGTVVIWTCAKEGEQWE  250 (302)
Q Consensus       171 ~~~~~~~l~s~~~D~~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~l~s~s~D~~i~iwd~~~~~~~~~  250 (302)
                          +..+++...++.|..+|. ++...  . .....+...+.++++.|++    +..++....+.|.+||....   ..
T Consensus       157 ----g~l~v~~~~~~~i~~~~~-~g~~~--~-~~~~~~~~~~~~i~~d~~g----~l~v~~~~~~~i~~~~~~g~---~~  221 (300)
T 2qc5_A          157 ----NALWFTENQNNSIGRITN-TGKLE--E-YPLPTNAAAPVGITSGNDG----ALWFVEIMGNKIGRITTTGE---IS  221 (300)
T ss_dssp             ----SSEEEEETTTTEEEEECT-TCCEE--E-EECSSTTCCEEEEEECTTS----SEEEEETTTTEEEEECTTCC---EE
T ss_pred             ----CCEEEEecCCCeEEEECC-CCcEE--E-eeCCCCCCCcceEEECCCC----CEEEEccCCCEEEEEcCCCc---EE
Confidence                355666666778888887 33211  1 1122334568899999875    56666666778999987321   11


Q ss_pred             eeeeccCCCcEEEEEEccCCCEEEEecCC-ceEEeeecCCceEEEe
Q 022111          251 GRVLKDFKTPVWSVSWSLTGNLLAVADAN-NVTLWKEAVDGEWQQV  295 (302)
Q Consensus       251 ~~~~~~~~~~v~~~~~spdg~~la~~~~d-~i~~w~~~~~~~~~~~  295 (302)
                      ..........+.+++++++|++.++...+ .|..++.  .+.....
T Consensus       222 ~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~--~g~~~~~  265 (300)
T 2qc5_A          222 EYDIPTPNARPHAITAGKNSEIWFTEWGANQIGRITN--DNTIQEY  265 (300)
T ss_dssp             EEECSSTTCCEEEEEECSTTCEEEEETTTTEEEEECT--TSCEEEE
T ss_pred             EEECCCCCCCceEEEECCCCCEEEeccCCCeEEEECC--CCcEEEE
Confidence            11122233568899999999977666544 7999986  3555444

>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}

Probab=99.28  E-value=8.2e-09  Score=91.99  Aligned_cols=237  Identities=8%  Similarity=-0.019  Sum_probs=143.1

Q ss_pred             ceeEEEEccCCCEEEEeeCCCcEEEEeecCCCceEEEEecCcccCeEEEEeeCCCCCCEEEEEeCCC--eEEEEEcCCCC
Q 022111           13 TVHDVAMDFYGKRLATASSDSSIKIIGLSNSASQHLATLKGHRGPVWQVAWAHPKFGSILASCSYDG--QVIIWKEGNQN   90 (302)
Q Consensus        13 ~v~~~~~s~~~~~l~s~~~d~~v~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~s~D~--~i~iwd~~~~~   90 (302)
                      ....++|+++++++++...++.|++|+........  .... ..... ++|+++  ++.|+.+..++  .|.+++.....
T Consensus       132 ~P~~la~d~~g~lyv~d~~~~~I~~id~~~g~~~~--~~~~-~~~~~-ia~~~~--g~~l~~~d~~~~~~I~~~d~~~~~  205 (409)
T 3hrp_A          132 YMWGIAAVGNNTVLAYQRDDPRVRLISVDDNKVTT--VHPG-FKGGK-PAVTKD--KQRVYSIGWEGTHTVYVYMKASGW  205 (409)
T ss_dssp             CEEEEEECSTTEEEEEETTTTEEEEEETTTTEEEE--EEET-CCBCB-CEECTT--SSEEEEEBSSTTCEEEEEEGGGTT
T ss_pred             CceEEEEeCCCCEEEEecCCCcEEEEECCCCEEEE--eecc-CCCCc-eeEecC--CCcEEEEecCCCceEEEEEcCCCc
Confidence            56789999999877777777999999986533222  2222 22223 788754  67777777755  78888875443


Q ss_pred             ceeEEEEecC-CCCCeeEEEecCCCCCcEEEEEecCCcEEEEEecCCCCeeee-ee-cccCCCCe--EEEEeCCCCCCCc
Q 022111           91 DWTQAHTFND-HKSSVNSIAWAPHELGLSLACGSSDGNISVFTATADGGWDTT-RI-DQAHPVGV--TSVSWAPAMAPGA  165 (302)
Q Consensus        91 ~~~~~~~~~~-h~~~i~~l~~~pd~~~~~l~sg~~d~~v~~~~~~~~~~~~~~-~~-~~~h~~~v--~~~~~~~~~~~~~  165 (302)
                      .......+.. ....+.+++++|+. +. |..+..++.|+.|+..... .... .. ..++....  ..++|+|+.    
T Consensus       206 ~~~~~g~~~~~~~~~p~~iav~p~~-g~-lyv~d~~~~I~~~d~~~~~-~~~~~~~~~~g~~~~~P~~~ia~~p~~----  278 (409)
T 3hrp_A          206 APTRIGQLGSTFSGKIGAVALDETE-EW-LYFVDSNKNFGRFNVKTQE-VTLIKQLELSGSLGTNPGPYLIYYFVD----  278 (409)
T ss_dssp             CEEEEEECCTTSCSCCCBCEECTTS-SE-EEEECTTCEEEEEETTTCC-EEEEEECCCCSCCCCSSCCEEEEETTT----
T ss_pred             eeEEeeeccchhcCCcEEEEEeCCC-Ce-EEEEECCCcEEEEECCCCC-EEEEecccccCCCCCCccccEEEeCCC----
Confidence            2112212222 44567889999953 44 4446677889888875332 2111 00 11111111  277777742    


Q ss_pred             eeecccCCCceeEEEeeCCCcEEEEEEecCccccccccccccC---------------CCceeEEEeeCCCCCCccEEEE
Q 022111          166 LVGLGLLDPVQKLASCGCDNTVKVWKMYNGIWKMDCFPALQMH---------------SDWVRSVAWAPNLGLPKSTIAS  230 (302)
Q Consensus       166 ~~~~~~~~~~~~l~s~~~D~~v~iwd~~~~~~~~~~~~~~~~h---------------~~~v~~v~~~p~~~~~~~~l~s  230 (302)
                               +.++++-...+.|+.||.....   .   .+.++               -.....++++|++    +.+++
T Consensus       279 ---------g~lyv~d~~~~~I~~~~~~g~~---~---~~~g~~~~~g~~dg~~~~~~~~~P~gia~d~dG----~lyva  339 (409)
T 3hrp_A          279 ---------SNFYMSDQNLSSVYKITPDGEC---E---WFCGSATQKTVQDGLREEALFAQPNGMTVDEDG----NFYIV  339 (409)
T ss_dssp             ---------TEEEEEETTTTEEEEECTTCCE---E---EEEECTTCCSCBCEEGGGCBCSSEEEEEECTTC----CEEEE
T ss_pred             ---------CEEEEEeCCCCEEEEEecCCCE---E---EEEeCCCCCCcCCCcccccEeCCCeEEEEeCCC----CEEEE
Confidence                     4677777778889988865321   1   11111               1347889999985    67778


Q ss_pred             Ee-cCCeEEEEEeccCCcceeeeeeccC---------------CCcEEEEEEccCCCEEEEecCC-ceEEee
Q 022111          231 AS-QDGTVVIWTCAKEGEQWEGRVLKDF---------------KTPVWSVSWSLTGNLLAVADAN-NVTLWK  285 (302)
Q Consensus       231 ~s-~D~~i~iwd~~~~~~~~~~~~~~~~---------------~~~v~~~~~spdg~~la~~~~d-~i~~w~  285 (302)
                      -+ .++.|+.|++.... .   ....+.               -.....++++|+|+++++-..+ .|+.+.
T Consensus       340 d~~~~~~I~~~~~~~G~-v---~~~~g~~~~~g~~~g~~~~~~~~~P~giavd~~g~lyVad~~n~~Ir~i~  407 (409)
T 3hrp_A          340 DGFKGYCLRKLDILDGY-V---STVAGQVDVASQIDGTPLEATFNYPYDICYDGEGGYWIAEAWGKAIRKYA  407 (409)
T ss_dssp             ETTTTCEEEEEETTTTE-E---EEEEECTTCBSCCCBSTTTCCBSSEEEEEECSSSEEEEEESTTCEEEEEE
T ss_pred             eCCCCCEEEEEECCCCE-E---EEEeCCCCCCCcCCCChhceEeCCceEEEEcCCCCEEEEECCCCeEEEEE
Confidence            77 88999999954321 1   111111               1357899999998776665544 566654

>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*

Probab=99.28  E-value=2.2e-10  Score=100.78  Aligned_cols=177  Identities=14%  Similarity=0.051  Sum_probs=124.5

Q ss_pred             ceeEEEEccCCCEEEEeeCCCcEEEEeecCCC---------ceEEEEecCcccCeEEEEeeCCCCCCEEEEEeCCCeEEE
Q 022111           13 TVHDVAMDFYGKRLATASSDSSIKIIGLSNSA---------SQHLATLKGHRGPVWQVAWAHPKFGSILASCSYDGQVII   83 (302)
Q Consensus        13 ~v~~~~~s~~~~~l~s~~~d~~v~lw~~~~~~---------~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~s~D~~i~i   83 (302)
                      .++.+++++...++++|+.++ +++|++....         .+... ...+.. |++|+|  +  +++|+++ .++.|++
T Consensus        39 ~~nlLais~~~gll~a~~~~~-l~v~~~~~l~~~~~~~~~~~~~~~-~~~lp~-V~~l~f--d--~~~L~v~-~~~~l~v  110 (388)
T 1xip_A           39 SLQNLDISNSKSLFVAASGSK-AVVGELQLLRDHITSDSTPLTFKW-EKEIPD-VIFVCF--H--GDQVLVS-TRNALYS  110 (388)
T ss_dssp             CCBCEEEETTTTEEEEEETTE-EEEEEHHHHHHHHHSSSCCCCCSE-EEECTT-EEEEEE--E--TTEEEEE-ESSEEEE
T ss_pred             cccEEEEcCCCCEEEEeCCCE-EEEEEhhHhhhhhccccccccceE-EeeCCC-eeEEEE--C--CCEEEEE-cCCcEEE
Confidence            578899999999999999875 6679864211         11111 223566 999999  2  6888888 8899999


Q ss_pred             EEcCCCCceeEEEEecCCCCCeeEEEecCCCCCcEEEEEecCCcEEEEEecCCCCeeeeeecccCCCCeEEEEeCCCCCC
Q 022111           84 WKEGNQNDWTQAHTFNDHKSSVNSIAWAPHELGLSLACGSSDGNISVFTATADGGWDTTRIDQAHPVGVTSVSWAPAMAP  163 (302)
Q Consensus        84 wd~~~~~~~~~~~~~~~h~~~i~~l~~~pd~~~~~l~sg~~d~~v~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~  163 (302)
                      ||+++...   ......|..++.++.+.+.    .++.+..||.+.+|++.....   ..    +...|++++|+|.   
T Consensus       111 ~dv~sl~~---~~~~~~~~~~v~~i~~~~p----~~av~~~dG~L~v~dl~~~~~---~~----~~~~Vs~v~WSpk---  173 (388)
T 1xip_A          111 LDLEELSE---FRTVTSFEKPVFQLKNVNN----TLVILNSVNDLSALDLRTKST---KQ----LAQNVTSFDVTNS---  173 (388)
T ss_dssp             EESSSTTC---EEEEEECSSCEEEEEECSS----EEEEEETTSEEEEEETTTCCE---EE----EEESEEEEEECSS---
T ss_pred             EEchhhhc---cCccceeecceeeEEecCC----CEEEEECCCCEEEEEccCCcc---cc----ccCCceEEEEcCC---
Confidence            99876542   2234456778888877653    388899999999999874432   11    2346999999985   


Q ss_pred             CceeecccCCCceeEEEeeCCCcEEEEEEecCcc--c--cccccccc---cCCCceeEEEeeCCCCCCccEEEEE
Q 022111          164 GALVGLGLLDPVQKLASCGCDNTVKVWKMYNGIW--K--MDCFPALQ---MHSDWVRSVAWAPNLGLPKSTIASA  231 (302)
Q Consensus       164 ~~~~~~~~~~~~~~l~s~~~D~~v~iwd~~~~~~--~--~~~~~~~~---~h~~~v~~v~~~p~~~~~~~~l~s~  231 (302)
                                 |  ++.|..||++++|+......  +  +.+-..+.   +|...|.+|.|.+++    .++++-
T Consensus       174 -----------G--~~vg~~dg~i~~~~~~~~~~~~k~~I~~Pp~~~~~~~~~~~V~sI~wl~~~----~flv~y  231 (388)
T 1xip_A          174 -----------Q--LAVLLKDRSFQSFAWRNGEMEKQFEFSLPSELEELPVEEYSPLSVTILSPQ----DFLAVF  231 (388)
T ss_dssp             -----------E--EEEEETTSCEEEEEEETTEEEEEEEECCCHHHHTSCTTTSEEEEEEESSSS----EEEEEE
T ss_pred             -----------c--eEEEEcCCcEEEEcCCCccccccceecCCcccccccCCCeeEEEEEEecCC----eEEEEE
Confidence                       2  67889999999998876531  1  11111122   478899999999874    666663

>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*

Probab=99.25  E-value=2.2e-08  Score=92.82  Aligned_cols=250  Identities=14%  Similarity=0.101  Sum_probs=152.4

Q ss_pred             ceeEEEEccCCCEEEEeeCCCcEEEEeecCCCceEEEEecCcccCeEEEEeeC---CCCCCEEEEEe-CCCeEEEEEcCC
Q 022111           13 TVHDVAMDFYGKRLATASSDSSIKIIGLSNSASQHLATLKGHRGPVWQVAWAH---PKFGSILASCS-YDGQVIIWKEGN   88 (302)
Q Consensus        13 ~v~~~~~s~~~~~l~s~~~d~~v~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~---~~~~~~l~s~s-~D~~i~iwd~~~   88 (302)
                      .+..+.|+|||+++++++.|+.|.+||+...+.+.+..+..... -..++|++   + +|+++++++ .++++.++|..+
T Consensus       198 ~p~~v~~SpDGr~lyv~~~dg~V~viD~~~~t~~~v~~i~~G~~-P~~ia~s~~~~p-DGk~l~v~n~~~~~v~ViD~~t  275 (567)
T 1qks_A          198 AVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIGSE-ARSIETSKMEGW-EDKYAIAGAYWPPQYVIMDGET  275 (567)
T ss_dssp             CEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCEEEEEECCSE-EEEEEECCSTTC-TTTEEEEEEEETTEEEEEETTT
T ss_pred             CccceEECCCCCEEEEEcCCCeEEEEECCCCCCcEeEEEecCCC-CceeEEccccCC-CCCEEEEEEccCCeEEEEECCC
Confidence            45688999999999999999999999985223344555544333 46899983   3 377766554 569999999766


Q ss_pred             CCceeEEEEecC----------C-CCCeeEEEecCCCCCcEEEEEecCCcEEEEEecCCCCeeeeeecccCCCCeEEEEe
Q 022111           89 QNDWTQAHTFND----------H-KSSVNSIAWAPHELGLSLACGSSDGNISVFTATADGGWDTTRIDQAHPVGVTSVSW  157 (302)
Q Consensus        89 ~~~~~~~~~~~~----------h-~~~i~~l~~~pd~~~~~l~sg~~d~~v~~~~~~~~~~~~~~~~~~~h~~~v~~~~~  157 (302)
                      ..   .++++..          | ...+..+..+++. ...++....++.|.++|...........+.  .......+.|
T Consensus       276 ~~---~~~~i~~~~~~~~~~~~~p~~rva~i~~s~~~-~~~vv~~~~~g~v~~vd~~~~~~~~v~~i~--~~~~~~d~~~  349 (567)
T 1qks_A          276 LE---PKKIQSTRGMTYDEQEYHPEPRVAAILASHYR-PEFIVNVKETGKILLVDYTDLNNLKTTEIS--AERFLHDGGL  349 (567)
T ss_dssp             CC---EEEEEECCEECTTTCCEESCCCEEEEEECSSS-SEEEEEETTTTEEEEEETTCSSEEEEEEEE--CCSSEEEEEE
T ss_pred             Cc---EEEEEeccccccccccccCCCceEEEEEcCCC-CEEEEEecCCCeEEEEecCCCccceeeeee--ccccccCceE
Confidence            53   3333221          2 2267788888874 345666677789988887543222222221  1223456677


Q ss_pred             CCCCCCCceeecccCCCcee-EEEeeCCCcEEEEEEecCccccccccc--cccCCCceeEEEeeCCCCCCccEEEEEe-c
Q 022111          158 APAMAPGALVGLGLLDPVQK-LASCGCDNTVKVWKMYNGIWKMDCFPA--LQMHSDWVRSVAWAPNLGLPKSTIASAS-Q  233 (302)
Q Consensus       158 ~~~~~~~~~~~~~~~~~~~~-l~s~~~D~~v~iwd~~~~~~~~~~~~~--~~~h~~~v~~v~~~p~~~~~~~~l~s~s-~  233 (302)
                      +|++              ++ ++++..++.|.++|+.++... ..+..  -..|.+....+ ++|++   +...+++. .
T Consensus       350 ~pdg--------------r~~~va~~~sn~V~ViD~~t~kl~-~~i~vgg~~Phpg~g~~~-~~p~~---g~v~~t~~~g  410 (567)
T 1qks_A          350 DGSH--------------RYFITAANARNKLVVIDTKEGKLV-AIEDTGGQTPHPGRGANF-VHPTF---GPVWATSHMG  410 (567)
T ss_dssp             CTTS--------------CEEEEEEGGGTEEEEEETTTTEEE-EEEECSSSSBCCTTCEEE-EETTT---EEEEEEEBSS
T ss_pred             CCCC--------------CEEEEEeCCCCeEEEEECCCCcEE-EEEeccCcCCCCccceee-ECCCC---CcEEEeCCCC
Confidence            7754              44 455567889999999876422 11111  12354322222 57874   34455554 4


Q ss_pred             CCeEEEEEeccCCcc---eee-eeeccCCCcEEEEEEccCCCEEEEecC--------CceEEeeecCC
Q 022111          234 DGTVVIWTCAKEGEQ---WEG-RVLKDFKTPVWSVSWSLTGNLLAVADA--------NNVTLWKEAVD  289 (302)
Q Consensus       234 D~~i~iwd~~~~~~~---~~~-~~~~~~~~~v~~~~~spdg~~la~~~~--------d~i~~w~~~~~  289 (302)
                      +++|.++|....+..   |.. ..+......-.-++.+|++++|-+...        ++|.++|....
T Consensus       411 ~~~Vsvid~~~~~~~~~~~kvv~~i~~~g~g~~~i~~~p~~~~l~v~~~~~~~~~~~~~v~v~d~~~~  478 (567)
T 1qks_A          411 DDSVALIGTDPEGHPDNAWKILDSFPALGGGSLFIKTHPNSQYLYVDATLNPEAEISGSVAVFDIKAM  478 (567)
T ss_dssp             SSEEEEEECCTTTCTTTBTSEEEEEECSCSCCCCEECCTTCSEEEEECTTCSSHHHHTCEEEEEGGGC
T ss_pred             CCeEEEecCCCCCCccccCEEEEEEecCCCCCEEEEeCCCCCeEEEecCCCCCcccCceEEEEECCcc
Confidence            689999998753211   221 112222222234788999998877652        37999998643

>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*

Probab=99.25  E-value=1.9e-09  Score=102.64  Aligned_cols=253  Identities=10%  Similarity=0.020  Sum_probs=143.7

Q ss_pred             ccccccceeEEEEccCCCEEE-----EeeCCCcEEEEeecCCCceEEEEecCcccCeEEEEeeCCCCCCEEEEEeCCC--
Q 022111            7 ETGHEDTVHDVAMDFYGKRLA-----TASSDSSIKIIGLSNSASQHLATLKGHRGPVWQVAWAHPKFGSILASCSYDG--   79 (302)
Q Consensus         7 ~~~h~~~v~~~~~s~~~~~l~-----s~~~d~~v~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~s~D~--   79 (302)
                      ..+|...+..++|||||++||     .|+...+|+++|+.++.... ..+.+  .....++|+ +  ++.|+.++.+.  
T Consensus       124 a~~~~~~l~~~~~SpDg~~lAy~~~~~G~~~~~i~v~dl~tg~~~~-~~~~~--~k~~~~~Ws-D--g~~l~y~~~~~~~  197 (693)
T 3iuj_A          124 SPDGTTALDQLSFSRDGRILAYSLSLAGSDWREIHLMDVESKQPLE-TPLKD--VKFSGISWL-G--NEGFFYSSYDKPD  197 (693)
T ss_dssp             STTSCCEEEEEEECTTSSEEEEEEECSSCCEEEEEEEETTTCSEEE-EEEEE--EESCCCEEE-T--TTEEEEEESSCCC
T ss_pred             cCCCcEEEEEEEECCCCCEEEEEEecCCCceEEEEEEECCCCCCCc-cccCC--ceeccEEEe-C--CCEEEEEEecCcc
Confidence            345667888999999999888     34444679999997654211 12221  112467898 5  77888888774  


Q ss_pred             -----------eEEEEEcCCCCc-eeEEEEecC-CCCCeeEEEecCCCCCcEEE-EEec---CCcEEEEEecCCC-Ceee
Q 022111           80 -----------QVIIWKEGNQND-WTQAHTFND-HKSSVNSIAWAPHELGLSLA-CGSS---DGNISVFTATADG-GWDT  141 (302)
Q Consensus        80 -----------~i~iwd~~~~~~-~~~~~~~~~-h~~~i~~l~~~pd~~~~~l~-sg~~---d~~v~~~~~~~~~-~~~~  141 (302)
                                 .|.+|++.+... ...+..... |...+..+.|+||  |.+|+ +.+.   .+.|.++++.... .+  
T Consensus       198 ~~~~~~~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~~SpD--g~~l~~~~~~~~~~~~i~~~d~~~~~~~~--  273 (693)
T 3iuj_A          198 GSELSARTDQHKVYFHRLGTAQEDDRLVFGAIPAQHHRYVGATVTED--DRFLLISAANSTSGNRLYVKDLSQENAPL--  273 (693)
T ss_dssp             -------CCCCEEEEEETTSCGGGCEEEESCSGGGCCSEEEEEECTT--SCEEEEEEESSSSCCEEEEEETTSTTCCC--
T ss_pred             cccccccCCCcEEEEEECCCCcccceEEEecCCCCCeEEEEEEEcCC--CCEEEEEEccCCCCcEEEEEECCCCCCce--
Confidence                       389998865432 123333333 4445778999998  55554 3332   2578888875432 22  


Q ss_pred             eeecccCCCCeEEEEeCCCCCCCceeecccCCCceeEEEeeCC---CcEEEEEEecCccccccccccccCCCceeEEEee
Q 022111          142 TRIDQAHPVGVTSVSWAPAMAPGALVGLGLLDPVQKLASCGCD---NTVKVWKMYNGIWKMDCFPALQMHSDWVRSVAWA  218 (302)
Q Consensus       142 ~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~D---~~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~~~  218 (302)
                      ..+. .+....... |++++             +.+++....+   +.|.++|+.++..  .....+..|...+.  .|+
T Consensus       274 ~~l~-~~~~~~~~~-~~~~g-------------~~l~~~t~~~~~~~~l~~~d~~~~~~--~~~~~l~~~~~~~~--~~s  334 (693)
T 3iuj_A          274 LTVQ-GDLDADVSL-VDNKG-------------STLYLLTNRDAPNRRLVTVDAANPGP--AHWRDLIPERQQVL--TVH  334 (693)
T ss_dssp             EEEE-CSSSSCEEE-EEEET-------------TEEEEEECTTCTTCEEEEEETTSCCG--GGCEEEECCCSSCE--EEE
T ss_pred             EEEe-CCCCceEEE-EeccC-------------CEEEEEECCCCCCCEEEEEeCCCCCc--cccEEEecCCCCEE--EEE
Confidence            2222 233333332 44432             3455555443   4677788765421  11234555665555  888


Q ss_pred             CCCCCCccEEEE-EecCC--eEEEEEeccCCcceeeeeeccCCCcEEEEEEccCCCEEEEe-cC----CceEEeeecCCc
Q 022111          219 PNLGLPKSTIAS-ASQDG--TVVIWTCAKEGEQWEGRVLKDFKTPVWSVSWSLTGNLLAVA-DA----NNVTLWKEAVDG  290 (302)
Q Consensus       219 p~~~~~~~~l~s-~s~D~--~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~la~~-~~----d~i~~w~~~~~~  290 (302)
                      |++    +.|+. ...++  .|++|++...   ....+.......+..++++|+++.|+.. ++    ..+..|+.. .+
T Consensus       335 ~~g----~~lv~~~~~~g~~~l~~~d~~g~---~~~~l~~p~~~~~~~~~~~~d~~~l~~~~ss~~tP~~l~~~d~~-~g  406 (693)
T 3iuj_A          335 SGS----GYLFAEYMVDATARVEQFDYEGK---RVREVALPGLGSVSGFNGKHDDPALYFGFENYAQPPTLYRFEPK-SG  406 (693)
T ss_dssp             EET----TEEEEEEEETTEEEEEEECTTSC---EEEEECCSSSSEEEECCCCTTCSCEEEEEECSSSCCEEEEECTT-TC
T ss_pred             EEC----CEEEEEEEECCeeEEEEEECCCC---eeEEeecCCCceEEeeecCCCCCEEEEEecCCCCCCEEEEEECC-CC
Confidence            885    44544 44565  5778876532   1122222333457788889988766554 33    257777764 34


Q ss_pred             eEEEee
Q 022111          291 EWQQVS  296 (302)
Q Consensus       291 ~~~~~~  296 (302)
                      .....+
T Consensus       407 ~~~~l~  412 (693)
T 3iuj_A          407 AISLYR  412 (693)
T ss_dssp             CEEEEE
T ss_pred             eEEEEE
Confidence            444443

>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}

Probab=99.23  E-value=1.5e-08  Score=87.44  Aligned_cols=234  Identities=8%  Similarity=0.022  Sum_probs=136.9

Q ss_pred             ceeEEEEccCCCEEEEeeCCCcEEEEeecCCCceEEEEecCcccCeEEEEeeCCCCCCEEEEEeCCCeEEEEEcCCCCce
Q 022111           13 TVHDVAMDFYGKRLATASSDSSIKIIGLSNSASQHLATLKGHRGPVWQVAWAHPKFGSILASCSYDGQVIIWKEGNQNDW   92 (302)
Q Consensus        13 ~v~~~~~s~~~~~l~s~~~d~~v~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~s~D~~i~iwd~~~~~~~   92 (302)
                      ...++.++ +++..++...++.|.++|..+  .+.+.++.. ......++++++  ++++++...++.|.+||..+..  
T Consensus        45 ~~~~i~~~-~~~lyv~~~~~~~v~viD~~t--~~~~~~i~~-~~~p~~i~~~~~--g~lyv~~~~~~~v~~iD~~t~~--  116 (328)
T 3dsm_A           45 VAQSMVIR-DGIGWIVVNNSHVIFAIDINT--FKEVGRITG-FTSPRYIHFLSD--EKAYVTQIWDYRIFIINPKTYE--  116 (328)
T ss_dssp             CEEEEEEE-TTEEEEEEGGGTEEEEEETTT--CCEEEEEEC-CSSEEEEEEEET--TEEEEEEBSCSEEEEEETTTTE--
T ss_pred             cceEEEEE-CCEEEEEEcCCCEEEEEECcc--cEEEEEcCC-CCCCcEEEEeCC--CeEEEEECCCCeEEEEECCCCe--
Confidence            35667764 355555666679999999865  344455542 345788998654  6666665589999999987653  


Q ss_pred             eEEEEecCCC-----CCeeEEEecCCCCCcEEEEEe-cCCcEEEEEecCCCCeeeeeecccCCCCeEEEEeCCCCCCCce
Q 022111           93 TQAHTFNDHK-----SSVNSIAWAPHELGLSLACGS-SDGNISVFTATADGGWDTTRIDQAHPVGVTSVSWAPAMAPGAL  166 (302)
Q Consensus        93 ~~~~~~~~h~-----~~i~~l~~~pd~~~~~l~sg~-~d~~v~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~  166 (302)
                       ....+....     .....+++ .+  +.++++.. .++.|.++|..+....  ..+..  ......+.++|+      
T Consensus       117 -~~~~i~~g~~~~~~~~p~~i~~-~~--~~lyv~~~~~~~~v~viD~~t~~~~--~~i~~--g~~p~~i~~~~d------  182 (328)
T 3dsm_A          117 -ITGYIECPDMDMESGSTEQMVQ-YG--KYVYVNCWSYQNRILKIDTETDKVV--DELTI--GIQPTSLVMDKY------  182 (328)
T ss_dssp             -EEEEEECTTCCTTTCBCCCEEE-ET--TEEEEEECTTCCEEEEEETTTTEEE--EEEEC--SSCBCCCEECTT------
T ss_pred             -EEEEEEcCCccccCCCcceEEE-EC--CEEEEEcCCCCCEEEEEECCCCeEE--EEEEc--CCCccceEEcCC------
Confidence             233333222     14566777 22  44444443 4889999997643211  12211  112234445543      


Q ss_pred             eecccCCCceeEEEeeCC----------CcEEEEEEecCcccccccccccc-CCCceeEEEeeCCCCCCccEEEEEecCC
Q 022111          167 VGLGLLDPVQKLASCGCD----------NTVKVWKMYNGIWKMDCFPALQM-HSDWVRSVAWAPNLGLPKSTIASASQDG  235 (302)
Q Consensus       167 ~~~~~~~~~~~l~s~~~D----------~~v~iwd~~~~~~~~~~~~~~~~-h~~~v~~v~~~p~~~~~~~~l~s~s~D~  235 (302)
                              +++++++..+          +.|.++|..++..    ...+.. .......++|+|++    +.|..+..  
T Consensus       183 --------G~l~v~~~~~~~~~~~~~~~~~v~~id~~t~~v----~~~~~~~~g~~p~~la~~~d~----~~lyv~~~--  244 (328)
T 3dsm_A          183 --------NKMWTITDGGYEGSPYGYEAPSLYRIDAETFTV----EKQFKFKLGDWPSEVQLNGTR----DTLYWINN--  244 (328)
T ss_dssp             --------SEEEEEBCCBCTTCSSCBCCCEEEEEETTTTEE----EEEEECCTTCCCEEEEECTTS----CEEEEESS--
T ss_pred             --------CCEEEEECCCccCCccccCCceEEEEECCCCeE----EEEEecCCCCCceeEEEecCC----CEEEEEcc--
Confidence                    4666666554          7899999876531    112211 12357899999985    44544433  


Q ss_pred             eEEEEEeccCCcceeeeeeccCCCcEEEEEEccC-CCEEEEe----cCC-ceEEeeec
Q 022111          236 TVVIWTCAKEGEQWEGRVLKDFKTPVWSVSWSLT-GNLLAVA----DAN-NVTLWKEA  287 (302)
Q Consensus       236 ~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~spd-g~~la~~----~~d-~i~~w~~~  287 (302)
                      .|.+||....... ............+.++++|+ ++++++.    ..+ .|.+|+..
T Consensus       245 ~v~~~d~~t~~~~-~~~~~~~~~~~p~gi~vdp~~g~lyva~~~~y~~~~~V~v~d~~  301 (328)
T 3dsm_A          245 DIWRMPVEADRVP-VRPFLEFRDTKYYGLTVNPNNGEVYVADAIDYQQQGIVYRYSPQ  301 (328)
T ss_dssp             SEEEEETTCSSCC-SSCSBCCCSSCEEEEEECTTTCCEEEEECTTSSSEEEEEEECTT
T ss_pred             EEEEEECCCCcee-eeeeecCCCCceEEEEEcCCCCeEEEEcccccccCCEEEEECCC
Confidence            8888988653211 00111111356889999995 5555554    334 79999975

>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B

Probab=99.23  E-value=3.4e-08  Score=83.86  Aligned_cols=234  Identities=10%  Similarity=-0.014  Sum_probs=139.2

Q ss_pred             cccceeEEEEccCC-CEEEEeeCCCcEEEEeecCCCceEEEEecCcccCeEEEEeeCCCCCCEEEEEeCCCeEEEEEcCC
Q 022111           10 HEDTVHDVAMDFYG-KRLATASSDSSIKIIGLSNSASQHLATLKGHRGPVWQVAWAHPKFGSILASCSYDGQVIIWKEGN   88 (302)
Q Consensus        10 h~~~v~~~~~s~~~-~~l~s~~~d~~v~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~s~D~~i~iwd~~~   88 (302)
                      +..--.+..|++++ ..+++...++.|+.|+......   ..+ .+...+.++++.++  |+++++ . +..|.+||..+
T Consensus        11 ~~~~~Egp~w~~~~~~l~~~d~~~~~i~~~d~~~~~~---~~~-~~~~~~~~i~~~~d--G~l~v~-~-~~~l~~~d~~~   82 (297)
T 3g4e_A           11 NCRCGESPVWEEVSNSLLFVDIPAKKVCRWDSFTKQV---QRV-TMDAPVSSVALRQS--GGYVAT-I-GTKFCALNWKE   82 (297)
T ss_dssp             CCSBEEEEEEETTTTEEEEEETTTTEEEEEETTTCCE---EEE-ECSSCEEEEEEBTT--SSEEEE-E-TTEEEEEETTT
T ss_pred             CCccccCCeEECCCCEEEEEECCCCEEEEEECCCCcE---EEE-eCCCceEEEEECCC--CCEEEE-E-CCeEEEEECCC
Confidence            33344567888864 4566666788999999865332   222 23457889999754  676554 3 56899999865


Q ss_pred             CCceeEEEEecC--CCCCeeEEEecCCCCCcEEEEEec---------CCcEEEEEecCCCCeeeeeecccCCCCeEEEEe
Q 022111           89 QNDWTQAHTFND--HKSSVNSIAWAPHELGLSLACGSS---------DGNISVFTATADGGWDTTRIDQAHPVGVTSVSW  157 (302)
Q Consensus        89 ~~~~~~~~~~~~--h~~~i~~l~~~pd~~~~~l~sg~~---------d~~v~~~~~~~~~~~~~~~~~~~h~~~v~~~~~  157 (302)
                      +. ...+.....  ....++.+++.|+  |.++++...         .....+|.+...+....  +. .+......++|
T Consensus        83 g~-~~~~~~~~~~~~~~~~~di~~d~d--G~l~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~--~~-~~~~~pngi~~  156 (297)
T 3g4e_A           83 QS-AVVLATVDNDKKNNRFNDGKVDPA--GRYFAGTMAEETAPAVLERHQGALYSLFPDHHVKK--YF-DQVDISNGLDW  156 (297)
T ss_dssp             TE-EEEEEECCTTCSSEEEEEEEECTT--SCEEEEEEECCSBTTBCCTTCEEEEEECTTSCEEE--EE-EEESBEEEEEE
T ss_pred             Cc-EEEEEecCCCCCCCCCCCEEECCC--CCEEEecCCcccccccccCCCcEEEEEECCCCEEE--Ee-eccccccceEE
Confidence            42 222222211  1235788999987  555554322         23456776654433221  11 12233567889


Q ss_pred             CCCCCCCceeecccCCCceeEEEeeCCCcEEEEEEe--cCccc-cccccccccCCCceeEEEeeCCCCCCccEEEEEecC
Q 022111          158 APAMAPGALVGLGLLDPVQKLASCGCDNTVKVWKMY--NGIWK-MDCFPALQMHSDWVRSVAWAPNLGLPKSTIASASQD  234 (302)
Q Consensus       158 ~~~~~~~~~~~~~~~~~~~~l~s~~~D~~v~iwd~~--~~~~~-~~~~~~~~~h~~~v~~v~~~p~~~~~~~~l~s~s~D  234 (302)
                      +|++             ..++++.+.++.|.+||+.  ++... ...+..+..+......+++.+++    +..++...+
T Consensus       157 spdg-------------~~lyv~~~~~~~i~~~~~d~~~G~~~~~~~~~~~~~~~~~p~g~~~d~~G----~lwva~~~~  219 (297)
T 3g4e_A          157 SLDH-------------KIFYYIDSLSYSVDAFDYDLQTGQISNRRSVYKLEKEEQIPDGMCIDAEG----KLWVACYNG  219 (297)
T ss_dssp             CTTS-------------CEEEEEEGGGTEEEEEEECTTTCCEEEEEEEEECCGGGCEEEEEEEBTTS----CEEEEEETT
T ss_pred             cCCC-------------CEEEEecCCCCcEEEEeccCCCCcccCcEEEEECCCCCCCCCeeEECCCC----CEEEEEcCC
Confidence            8864             2355667778899999984  33210 11122333344567889999885    667777778


Q ss_pred             CeEEEEEeccCCcceeeeeeccCCCcEEEEEEc-cCCCEEEEec
Q 022111          235 GTVVIWTCAKEGEQWEGRVLKDFKTPVWSVSWS-LTGNLLAVAD  277 (302)
Q Consensus       235 ~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~s-pdg~~la~~~  277 (302)
                      +.|..||..+..  ....+ ......+.+++|. ||++.|.+++
T Consensus       220 ~~v~~~d~~tG~--~~~~i-~~p~~~~t~~~f~g~d~~~L~vt~  260 (297)
T 3g4e_A          220 GRVIRLDPVTGK--RLQTV-KLPVDKTTSCCFGGKNYSEMYVTC  260 (297)
T ss_dssp             TEEEEECTTTCC--EEEEE-ECSSSBEEEEEEESGGGCEEEEEE
T ss_pred             CEEEEEcCCCce--EEEEE-ECCCCCceEEEEeCCCCCEEEEEc
Confidence            889999876332  11122 2223568999998 8887665543

>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}

Probab=99.17  E-value=1.6e-07  Score=78.99  Aligned_cols=237  Identities=8%  Similarity=-0.023  Sum_probs=146.1

Q ss_pred             cceeEEEEccCCCEEEEeeCCCcEEEEeecCCCceEEEEecCcccCeEEEEeeCCCCCCEEEEEeCCCeEEEEEcCCCCc
Q 022111           12 DTVHDVAMDFYGKRLATASSDSSIKIIGLSNSASQHLATLKGHRGPVWQVAWAHPKFGSILASCSYDGQVIIWKEGNQND   91 (302)
Q Consensus        12 ~~v~~~~~s~~~~~l~s~~~d~~v~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~s~D~~i~iwd~~~~~~   91 (302)
                      ..+.+++++++++.+++...++.|..++.. +... ...+......+..+++.+  +++++++...++.|..+|.. +. 
T Consensus        62 ~~~~~i~~~~~g~l~v~~~~~~~v~~~d~~-g~~~-~~~~~~~~~~~~~i~~~~--~g~l~v~~~~~~~i~~~~~~-g~-  135 (300)
T 2qc5_A           62 AKVMCLIVSSLGDIWFTENGANKIGKLSKK-GGFT-EYPLPQPDSGPYGITEGL--NGDIWFTQLNGDRIGKLTAD-GT-  135 (300)
T ss_dssp             CCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEE-EEECSSTTCCEEEEEECS--TTCEEEEETTTTEEEEECTT-SC-
T ss_pred             CcceeEEECCCCCEEEEecCCCeEEEECCC-CCeE-EecCCCCCCCCccceECC--CCCEEEEccCCCeEEEECCC-CC-
Confidence            567889999999877776667889998875 3222 223333445688898864  37787777768889999875 32 


Q ss_pred             eeEEEEecCCCCCeeEEEecCCCCCcEEEEEecCCcEEEEEecCCCCeeeeeecccCCCCeEEEEeCCCCCCCceeeccc
Q 022111           92 WTQAHTFNDHKSSVNSIAWAPHELGLSLACGSSDGNISVFTATADGGWDTTRIDQAHPVGVTSVSWAPAMAPGALVGLGL  171 (302)
Q Consensus        92 ~~~~~~~~~h~~~i~~l~~~pd~~~~~l~sg~~d~~v~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~  171 (302)
                      .. ...+......+..+++.|+  +.+.++...++.|..|+.  .+........ .+...+..+.+.++           
T Consensus       136 ~~-~~~~~~~~~~~~~i~~d~~--g~l~v~~~~~~~i~~~~~--~g~~~~~~~~-~~~~~~~~i~~d~~-----------  198 (300)
T 2qc5_A          136 IY-EYDLPNKGSYPAFITLGSD--NALWFTENQNNSIGRITN--TGKLEEYPLP-TNAAAPVGITSGND-----------  198 (300)
T ss_dssp             EE-EEECSSTTCCEEEEEECTT--SSEEEEETTTTEEEEECT--TCCEEEEECS-STTCCEEEEEECTT-----------
T ss_pred             EE-EccCCCCCCCceeEEECCC--CCEEEEecCCCeEEEECC--CCcEEEeeCC-CCCCCcceEEECCC-----------
Confidence            11 1223334567889999887  555666555778888875  2222221111 22334566766654           


Q ss_pred             CCCceeEEEeeCCCcEEEEEEecCccccccccccccCCCceeEEEeeCCCCCCccEEEEEecCCeEEEEEeccCCcceee
Q 022111          172 LDPVQKLASCGCDNTVKVWKMYNGIWKMDCFPALQMHSDWVRSVAWAPNLGLPKSTIASASQDGTVVIWTCAKEGEQWEG  251 (302)
Q Consensus       172 ~~~~~~l~s~~~D~~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~l~s~s~D~~i~iwd~~~~~~~~~~  251 (302)
                         +..+++....+.|.+||. ++...  . ..+..+...+.++++.|++    +..++...++.|..||...  . ...
T Consensus       199 ---g~l~v~~~~~~~i~~~~~-~g~~~--~-~~~~~~~~~~~~i~~d~~g----~l~v~~~~~~~i~~~~~~g--~-~~~  264 (300)
T 2qc5_A          199 ---GALWFVEIMGNKIGRITT-TGEIS--E-YDIPTPNARPHAITAGKNS----EIWFTEWGANQIGRITNDN--T-IQE  264 (300)
T ss_dssp             ---SSEEEEETTTTEEEEECT-TCCEE--E-EECSSTTCCEEEEEECSTT----CEEEEETTTTEEEEECTTS--C-EEE
T ss_pred             ---CCEEEEccCCCEEEEEcC-CCcEE--E-EECCCCCCCceEEEECCCC----CEEEeccCCCeEEEECCCC--c-EEE
Confidence               355555555677998887 33211  1 1122345568899999985    5566666678999998732  1 111


Q ss_pred             eeeccCCCcEEEEEEccCCCEEEEecCCceEEeee
Q 022111          252 RVLKDFKTPVWSVSWSLTGNLLAVADANNVTLWKE  286 (302)
Q Consensus       252 ~~~~~~~~~v~~~~~spdg~~la~~~~d~i~~w~~  286 (302)
                      .........+.++++.++|++.++.. ++|..++.
T Consensus       265 ~~~~~~~~~~~~i~~~~~g~l~v~~~-~~i~~~~p  298 (300)
T 2qc5_A          265 YQLQTENAEPHGITFGKDGSVWFALK-CKIGKLNL  298 (300)
T ss_dssp             EECCSTTCCCCCEEECTTSCEEEECS-SEEEEEEE
T ss_pred             EECCccCCccceeEeCCCCCEEEEcc-CceEEeCC
Confidence            11222234578899999998776665 35655553

>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A

Probab=99.16  E-value=5.4e-09  Score=86.97  Aligned_cols=197  Identities=10%  Similarity=0.003  Sum_probs=129.0

Q ss_pred             cceeEEEEccCCCEEEEeeCCCcEEEEeecCCCceEEEEec-CcccCeEEEEeeCCCCCCEEEEEeCCCeEEEEEcCCCC
Q 022111           12 DTVHDVAMDFYGKRLATASSDSSIKIIGLSNSASQHLATLK-GHRGPVWQVAWAHPKFGSILASCSYDGQVIIWKEGNQN   90 (302)
Q Consensus        12 ~~v~~~~~s~~~~~l~s~~~d~~v~lw~~~~~~~~~~~~~~-~h~~~v~~v~~~~~~~~~~l~s~s~D~~i~iwd~~~~~   90 (302)
                      ..+.+++++++++.+++.. ++.|.+|+......   ..+. .....+..+++.+  +|+++++...++.|.+|+.....
T Consensus        67 ~~p~~i~~~~~g~l~v~~~-~~~i~~~d~~~~~~---~~~~~~~~~~p~~i~~~~--~g~l~v~~~~~~~i~~~~~~~~~  140 (270)
T 1rwi_B           67 YQPQGLAVDGAGTVYVTDF-NNRVVTLAAGSNNQ---TVLPFDGLNYPEGLAVDT--QGAVYVADRGNNRVVKLAAGSKT  140 (270)
T ss_dssp             CSCCCEEECTTCCEEEEET-TTEEEEECTTCSCC---EECCCCSCSSEEEEEECT--TCCEEEEEGGGTEEEEECTTCCS
T ss_pred             CCcceeEECCCCCEEEEcC-CCEEEEEeCCCceE---eeeecCCcCCCcceEECC--CCCEEEEECCCCEEEEEECCCce
Confidence            4577899999998666655 88899998754322   2222 2235678899875  37888887788899999754332


Q ss_pred             ceeEEEEecCCCCCeeEEEecCCCCCcEEEEEecCCcEEEEEecCCCCeeeeeecccCCCCeEEEEeCCCCCCCceeecc
Q 022111           91 DWTQAHTFNDHKSSVNSIAWAPHELGLSLACGSSDGNISVFTATADGGWDTTRIDQAHPVGVTSVSWAPAMAPGALVGLG  170 (302)
Q Consensus        91 ~~~~~~~~~~h~~~i~~l~~~pd~~~~~l~sg~~d~~v~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~  170 (302)
                      .   ..........+..+++.|+  +.++++...++.|.+|+..... .  ......+......++++++          
T Consensus       141 ~---~~~~~~~~~~p~~i~~~~~--g~l~v~~~~~~~i~~~~~~~~~-~--~~~~~~~~~~p~~i~~d~~----------  202 (270)
T 1rwi_B          141 Q---TVLPFTGLNDPDGVAVDNS--GNVYVTDTDNNRVVKLEAESNN-Q--VVLPFTDITAPWGIAVDEA----------  202 (270)
T ss_dssp             C---EECCCCSCCSCCCEEECTT--CCEEEEEGGGTEEEEECTTTCC-E--EECCCSSCCSEEEEEECTT----------
T ss_pred             e---EeeccccCCCceeEEEeCC--CCEEEEECCCCEEEEEecCCCc-e--EeecccCCCCceEEEECCC----------
Confidence            1   1111223346788999987  5567776677899999865321 1  1111122244667777664          


Q ss_pred             cCCCceeEEEeeCCCcEEEEEEecCccccccccccccCCCceeEEEeeCCCCCCccEEEEEecCCeEEEEEecc
Q 022111          171 LLDPVQKLASCGCDNTVKVWKMYNGIWKMDCFPALQMHSDWVRSVAWAPNLGLPKSTIASASQDGTVVIWTCAK  244 (302)
Q Consensus       171 ~~~~~~~l~s~~~D~~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~l~s~s~D~~i~iwd~~~  244 (302)
                          +..+++...++.|.+||.......    .....+-..+.+++++|++    +.+++...++.|+++++..
T Consensus       203 ----g~l~v~~~~~~~v~~~~~~~~~~~----~~~~~~~~~p~~i~~~~~g----~l~v~~~~~~~v~~~~~~~  264 (270)
T 1rwi_B          203 ----GTVYVTEHNTNQVVKLLAGSTTST----VLPFTGLNTPLAVAVDSDR----TVYVADRGNDRVVKLTSLE  264 (270)
T ss_dssp             ----CCEEEEETTTSCEEEECTTCSCCE----ECCCCSCSCEEEEEECTTC----CEEEEEGGGTEEEEECCCG
T ss_pred             ----CCEEEEECCCCcEEEEcCCCCcce----eeccCCCCCceeEEECCCC----CEEEEECCCCEEEEEcCCC
Confidence                356677777889999997653211    1112233568999999985    6788888999999998764

>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}

Probab=99.15  E-value=1.3e-08  Score=97.58  Aligned_cols=239  Identities=14%  Similarity=0.053  Sum_probs=133.7

Q ss_pred             ccCCCEEEEeeCCCc---EEEEeecC-----CCceEEEE---e-cCcccCeEEEEeeCCCCCCEEEEEeCC-----CeEE
Q 022111           20 DFYGKRLATASSDSS---IKIIGLSN-----SASQHLAT---L-KGHRGPVWQVAWAHPKFGSILASCSYD-----GQVI   82 (302)
Q Consensus        20 s~~~~~l~s~~~d~~---v~lw~~~~-----~~~~~~~~---~-~~h~~~v~~v~~~~~~~~~~l~s~s~D-----~~i~   82 (302)
                      +|+|++++-...++.   -.||....     +..+.+..   + .+|...+..++|+|+  |++||.++.+     .+|+
T Consensus       115 ~pdG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~lld~~~l~~~~~~~~~~~~~SPD--G~~la~~~~~~G~e~~~i~  192 (741)
T 1yr2_A          115 QRRGASVFYSWNSGLMNQSQLLVRPADAPVGTKGRVLLDPNTWAKDGATALDAWAASDD--GRLLAYSVQDGGSDWRTVK  192 (741)
T ss_dssp             EEETTEEEEEEECSSCSSCEEEEEETTSCTTCCCEEEECGGGCC----EEEEEEEECTT--SSEEEEEEEETTCSEEEEE
T ss_pred             EEECCEEEEEEEcCCCeEEEEEEEcCCccCCCCCEEEECHHHhccCCCEEEEeEEECCC--CCEEEEEEcCCCCceEEEE
Confidence            488988876654433   56676542     22222211   1 234446788999864  8888877653     4699


Q ss_pred             EEEcCCCCceeEEEEecCCCCCeeEEEecCCCCCcEEEEEecCCc--------------EEEEEecCCCCeeeeeec-cc
Q 022111           83 IWKEGNQNDWTQAHTFNDHKSSVNSIAWAPHELGLSLACGSSDGN--------------ISVFTATADGGWDTTRID-QA  147 (302)
Q Consensus        83 iwd~~~~~~~~~~~~~~~h~~~i~~l~~~pd~~~~~l~sg~~d~~--------------v~~~~~~~~~~~~~~~~~-~~  147 (302)
                      +||+.++... .. .+  +...+..++|+|| .  .|+.++.++.              |++|++.+.......... ..
T Consensus       193 v~dl~tg~~~-~~-~~--~~~~~~~~~wspD-~--~l~~~~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~lv~~~~~  265 (741)
T 1yr2_A          193 FVGVADGKPL-AD-EL--KWVKFSGLAWLGN-D--ALLYSRFAEPKEGQAFQALNYNQTVWLHRLGTPQSADQPVFATPE  265 (741)
T ss_dssp             EEETTTCCEE-EE-EE--EEEESCCCEESTT-S--EEEEEECCCC--------CCCCCEEEEEETTSCGGGCEEEECCTT
T ss_pred             EEECCCCCCC-Cc-cC--CCceeccEEEECC-C--EEEEEEecCcccccccccCCCCCEEEEEECCCCchhCEEEeccCC
Confidence            9999876421 11 11  2222367899998 4  5666665543              777876543211111111 12


Q ss_pred             CCCCeEEEEeCCCCCCCceeecccCCCceeEEEeeCC-----CcEEEEEEecCccccccccccccCCCceeEEEeeCCCC
Q 022111          148 HPVGVTSVSWAPAMAPGALVGLGLLDPVQKLASCGCD-----NTVKVWKMYNGIWKMDCFPALQMHSDWVRSVAWAPNLG  222 (302)
Q Consensus       148 h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~D-----~~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~  222 (302)
                      +...+..+.|+|++              ++|+..+.+     ..|++||+.++...  +...+..+...+.... +|++ 
T Consensus       266 ~~~~~~~~~~SpDG--------------~~l~~~~~~~~~~~~~l~~~d~~~~~~~--~~~~l~~~~~~~~~~~-~~dg-  327 (741)
T 1yr2_A          266 LPKRGHGASVSSDG--------------RWVVITSSEGTDPVNTVHVARVTNGKIG--PVTALIPDLKAQWDFV-DGVG-  327 (741)
T ss_dssp             CTTCEEEEEECTTS--------------CEEEEEEECTTCSCCEEEEEEEETTEEC--CCEEEECSSSSCEEEE-EEET-
T ss_pred             CCeEEEEEEECCCC--------------CEEEEEEEccCCCcceEEEEECCCCCCc--ccEEecCCCCceEEEE-eccC-
Confidence            33347788898864              566665543     47999999865211  0223334444444443 4775 


Q ss_pred             CCccEEEEEec----CCeEEEEEeccCCcceeeeeeccCCCcEEEEEEccCCCEEEEecCC-ceEEeeecCCc
Q 022111          223 LPKSTIASASQ----DGTVVIWTCAKEGEQWEGRVLKDFKTPVWSVSWSLTGNLLAVADAN-NVTLWKEAVDG  290 (302)
Q Consensus       223 ~~~~~l~s~s~----D~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~la~~~~d-~i~~w~~~~~~  290 (302)
                         +.|+..+.    ++.|.+||+......+. .+..+....+.+++|+ ++.+++++..+ ..+||....+|
T Consensus       328 ---~~l~~~s~~~~~~~~l~~~d~~~~~~~~~-~l~~~~~~~l~~~~~~-~~~lv~~~~~dg~~~l~~~~~~g  395 (741)
T 1yr2_A          328 ---DQLWFVSGDGAPLKKIVRVDLSGSTPRFD-TVVPESKDNLESVGIA-GNRLFASYIHDAKSQVLAFDLDG  395 (741)
T ss_dssp             ---TEEEEEECTTCTTCEEEEEECSSSSCEEE-EEECCCSSEEEEEEEE-BTEEEEEEEETTEEEEEEEETTS
T ss_pred             ---CEEEEEECCCCCCCEEEEEeCCCCccccE-EEecCCCCeEEEEEEE-CCEEEEEEEECCEEEEEEEeCCC
Confidence               55666654    34588888764211232 3334444557778887 56666777666 56777654333

>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}

Probab=99.13  E-value=5.8e-09  Score=87.93  Aligned_cols=185  Identities=12%  Similarity=0.037  Sum_probs=118.8

Q ss_pred             CCEEEEEeCCCeEEEEEcCCCCceeEEEEecCCC-CCeeEEEecCCCCCcEEEEEecCCcEEEEEecCCCCeeeeeeccc
Q 022111           69 GSILASCSYDGQVIIWKEGNQNDWTQAHTFNDHK-SSVNSIAWAPHELGLSLACGSSDGNISVFTATADGGWDTTRIDQA  147 (302)
Q Consensus        69 ~~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~h~-~~i~~l~~~pd~~~~~l~sg~~d~~v~~~~~~~~~~~~~~~~~~~  147 (302)
                      +++|++++.|+.|.+||.++++   .+.++..+. ..+.++.+.|+  |.+++  +.++.|..||. +. . .+..+...
T Consensus         5 ~~~lv~~~~~~~v~~~d~~tG~---~~w~~~~~~~~~~~~~~~~pd--G~ilv--s~~~~V~~~d~-~G-~-~~W~~~~~   74 (276)
T 3no2_A            5 QHLLVGGSGWNKIAIINKDTKE---IVWEYPLEKGWECNSVAATKA--GEILF--SYSKGAKMITR-DG-R-ELWNIAAP   74 (276)
T ss_dssp             CEEEEECTTCSEEEEEETTTTE---EEEEEECCTTCCCCEEEECTT--SCEEE--ECBSEEEEECT-TS-C-EEEEEECC
T ss_pred             CcEEEeeCCCCEEEEEECCCCe---EEEEeCCCccCCCcCeEECCC--CCEEE--eCCCCEEEECC-CC-C-EEEEEcCC
Confidence            6899999999999999986653   456666555 46889999998  66777  45778888876 32 2 22333322


Q ss_pred             CCCCeEEEEeCCCCCCCceeecccCCCceeEEEeeC-CCcEEEEEEecCc--cccccccccccCCCceeEEEeeCCCCCC
Q 022111          148 HPVGVTSVSWAPAMAPGALVGLGLLDPVQKLASCGC-DNTVKVWKMYNGI--WKMDCFPALQMHSDWVRSVAWAPNLGLP  224 (302)
Q Consensus       148 h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~-D~~v~iwd~~~~~--~~~~~~~~~~~h~~~v~~v~~~p~~~~~  224 (302)
                      ....+.++.+.|+              ++.+++.+. ++.|..+|. ++.  |.+.......++..+...++..+++   
T Consensus        75 ~~~~~~~~~~~~d--------------G~~lv~~~~~~~~v~~vd~-~Gk~l~~~~~~~~~~~~~~~~~~v~~~~~G---  136 (276)
T 3no2_A           75 AGCEMQTARILPD--------------GNALVAWCGHPSTILEVNM-KGEVLSKTEFETGIERPHAQFRQINKNKKG---  136 (276)
T ss_dssp             TTCEEEEEEECTT--------------SCEEEEEESTTEEEEEECT-TSCEEEEEEECCSCSSGGGSCSCCEECTTS---
T ss_pred             CCccccccEECCC--------------CCEEEEecCCCCEEEEEeC-CCCEEEEEeccCCCCcccccccCceECCCC---
Confidence            2234566666654              467777665 556666664 332  1111111111222345556677774   


Q ss_pred             ccEEEEEecCCeEEEEEeccCCcceeeeeeccCCCcEEEEEEccCCCEEEEecCC-ceEEeeec
Q 022111          225 KSTIASASQDGTVVIWTCAKEGEQWEGRVLKDFKTPVWSVSWSLTGNLLAVADAN-NVTLWKEA  287 (302)
Q Consensus       225 ~~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~la~~~~d-~i~~w~~~  287 (302)
                       +++++...++.|..||.. .+..|....    ...+.++...++|++|+++..+ .|..++..
T Consensus       137 -~~lv~~~~~~~v~~~d~~-G~~~w~~~~----~~~~~~~~~~~~g~~~v~~~~~~~v~~~d~~  194 (276)
T 3no2_A          137 -NYLVPLFATSEVREIAPN-GQLLNSVKL----SGTPFSSAFLDNGDCLVACGDAHCFVQLNLE  194 (276)
T ss_dssp             -CEEEEETTTTEEEEECTT-SCEEEEEEC----SSCCCEEEECTTSCEEEECBTTSEEEEECTT
T ss_pred             -CEEEEecCCCEEEEECCC-CCEEEEEEC----CCCccceeEcCCCCEEEEeCCCCeEEEEeCc
Confidence             789999999999999986 433443221    2356678888999998887766 68778755

>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1

Probab=99.11  E-value=2.8e-07  Score=79.35  Aligned_cols=228  Identities=10%  Similarity=-0.028  Sum_probs=131.8

Q ss_pred             eeEEEEccCC-CEEEEeeCCCcEEEEeecCCCceEEEEecCcccCeEEEEeeCCCCCCEEEEEeCCCeEEEEEcCCCCce
Q 022111           14 VHDVAMDFYG-KRLATASSDSSIKIIGLSNSASQHLATLKGHRGPVWQVAWAHPKFGSILASCSYDGQVIIWKEGNQNDW   92 (302)
Q Consensus        14 v~~~~~s~~~-~~l~s~~~d~~v~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~s~D~~i~iwd~~~~~~~   92 (302)
                      ..+..|++++ ..+++...++.|.+|+...+..   ..+. +...+.++.|.++  |+++++. .+ .|.+||..++. .
T Consensus        51 ~egp~~~~~~~~l~~~d~~~~~i~~~d~~~~~~---~~~~-~~~~v~~i~~~~d--g~l~v~~-~~-gl~~~d~~~g~-~  121 (326)
T 2ghs_A           51 GEGPTFDPASGTAWWFNILERELHELHLASGRK---TVHA-LPFMGSALAKISD--SKQLIAS-DD-GLFLRDTATGV-L  121 (326)
T ss_dssp             EEEEEEETTTTEEEEEEGGGTEEEEEETTTTEE---EEEE-CSSCEEEEEEEET--TEEEEEE-TT-EEEEEETTTCC-E
T ss_pred             CcCCeEeCCCCEEEEEECCCCEEEEEECCCCcE---EEEE-CCCcceEEEEeCC--CeEEEEE-CC-CEEEEECCCCc-E
Confidence            4567899975 4556666778899998765322   2222 2456889999764  6776654 44 48889986543 2


Q ss_pred             eEEEEecC--CCCCeeEEEecCCCCCcEEEEEecC----CcEEEEEecCCCCeeeeeecccCCCCeEEEEeCCCCCCCce
Q 022111           93 TQAHTFND--HKSSVNSIAWAPHELGLSLACGSSD----GNISVFTATADGGWDTTRIDQAHPVGVTSVSWAPAMAPGAL  166 (302)
Q Consensus        93 ~~~~~~~~--h~~~i~~l~~~pd~~~~~l~sg~~d----~~v~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~  166 (302)
                      ..+.....  ....++++++.|+  |.++++...+    ....||.+. .+...  .+. .+......++|+|++     
T Consensus       122 ~~~~~~~~~~~~~~~~~i~~d~~--G~l~v~~~~~~~~~~~~~l~~~~-~g~~~--~~~-~~~~~~~~i~~s~dg-----  190 (326)
T 2ghs_A          122 TLHAELESDLPGNRSNDGRMHPS--GALWIGTMGRKAETGAGSIYHVA-KGKVT--KLF-ADISIPNSICFSPDG-----  190 (326)
T ss_dssp             EEEECSSTTCTTEEEEEEEECTT--SCEEEEEEETTCCTTCEEEEEEE-TTEEE--EEE-EEESSEEEEEECTTS-----
T ss_pred             EEEeeCCCCCCCCCCCCEEECCC--CCEEEEeCCCcCCCCceEEEEEe-CCcEE--Eee-CCCcccCCeEEcCCC-----
Confidence            22221111  1235889999987  5555443321    234555544 33222  111 122235678888864     


Q ss_pred             eecccCCCceeEEEeeCCCcEEEEEEe--cC-ccc-cccccccccCCCceeEEEeeCCCCCCccEEEEEecCCeEEEEEe
Q 022111          167 VGLGLLDPVQKLASCGCDNTVKVWKMY--NG-IWK-MDCFPALQMHSDWVRSVAWAPNLGLPKSTIASASQDGTVVIWTC  242 (302)
Q Consensus       167 ~~~~~~~~~~~l~s~~~D~~v~iwd~~--~~-~~~-~~~~~~~~~h~~~v~~v~~~p~~~~~~~~l~s~s~D~~i~iwd~  242 (302)
                              ..++++.+.++.|.+||+.  ++ ... ...+..+.........+++.+++    +..++...++.|.+||.
T Consensus       191 --------~~lyv~~~~~~~I~~~d~~~~~Gl~~~~~~~~~~~~~~~~~p~gi~~d~~G----~lwva~~~~~~v~~~d~  258 (326)
T 2ghs_A          191 --------TTGYFVDTKVNRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEG----HIWNARWGEGAVDRYDT  258 (326)
T ss_dssp             --------CEEEEEETTTCEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTS----CEEEEEETTTEEEEECT
T ss_pred             --------CEEEEEECCCCEEEEEEcccccCCcccCceEEEECCCCCCCCCeeEECCCC----CEEEEEeCCCEEEEECC
Confidence                    1344555667889999985  33 211 11122233344557789998885    56666666788999987


Q ss_pred             ccCCcceeeeeeccCCCcEEEEEEc-cCCCEEEEec
Q 022111          243 AKEGEQWEGRVLKDFKTPVWSVSWS-LTGNLLAVAD  277 (302)
Q Consensus       243 ~~~~~~~~~~~~~~~~~~v~~~~~s-pdg~~la~~~  277 (302)
                      ...  . . .........+.+++|+ |+++.|.++.
T Consensus       259 ~g~--~-~-~~i~~~~~~~~~~af~g~d~~~L~vt~  290 (326)
T 2ghs_A          259 DGN--H-I-ARYEVPGKQTTCPAFIGPDASRLLVTS  290 (326)
T ss_dssp             TCC--E-E-EEEECSCSBEEEEEEESTTSCEEEEEE
T ss_pred             CCC--E-E-EEEECCCCCcEEEEEecCCCCEEEEEe
Confidence            321  1 1 1122233468999998 8987765543

>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*

Probab=99.10  E-value=6.7e-08  Score=89.53  Aligned_cols=236  Identities=11%  Similarity=-0.021  Sum_probs=141.5

Q ss_pred             ccCCCEEEEeeCCCcEEEEeecCCCceEEEEecCcccCeEEEEeeCCCCCCEEEEEeCCCeEEEEEcC--CCCceeEEEE
Q 022111           20 DFYGKRLATASSDSSIKIIGLSNSASQHLATLKGHRGPVWQVAWAHPKFGSILASCSYDGQVIIWKEG--NQNDWTQAHT   97 (302)
Q Consensus        20 s~~~~~l~s~~~d~~v~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~s~D~~i~iwd~~--~~~~~~~~~~   97 (302)
                      ++.+.++++...+++|.++|..+.  +.+..+... ..+..+.|+++  |+++++++.|+.|.+||+.  +.   ..+.+
T Consensus       164 d~~~~~~V~~~~~~~V~viD~~t~--~v~~~i~~g-~~p~~v~~SpD--Gr~lyv~~~dg~V~viD~~~~t~---~~v~~  235 (567)
T 1qks_A          164 DLENLFSVTLRDAGQIALIDGSTY--EIKTVLDTG-YAVHISRLSAS--GRYLFVIGRDGKVNMIDLWMKEP---TTVAE  235 (567)
T ss_dssp             CGGGEEEEEETTTTEEEEEETTTC--CEEEEEECS-SCEEEEEECTT--SCEEEEEETTSEEEEEETTSSSC---CEEEE
T ss_pred             CCCceEEEEeCCCCeEEEEECCCC--eEEEEEeCC-CCccceEECCC--CCEEEEEcCCCeEEEEECCCCCC---cEeEE
Confidence            344567778888999999998653  445555432 24568899864  8899999999999999985  43   23445


Q ss_pred             ecCCCCCeeEEEec----CCCCCcEEEE-EecCCcEEEEEecCCCCeeeeeecc-------cCCC-CeEEEEeCCCCCCC
Q 022111           98 FNDHKSSVNSIAWA----PHELGLSLAC-GSSDGNISVFTATADGGWDTTRIDQ-------AHPV-GVTSVSWAPAMAPG  164 (302)
Q Consensus        98 ~~~h~~~i~~l~~~----pd~~~~~l~s-g~~d~~v~~~~~~~~~~~~~~~~~~-------~h~~-~v~~~~~~~~~~~~  164 (302)
                      +.... ....++|+    ||  |+++++ .-.++++.++|..+...........       .|+. .+..+..++..   
T Consensus       236 i~~G~-~P~~ia~s~~~~pD--Gk~l~v~n~~~~~v~ViD~~t~~~~~~i~~~~~~~~~~~~~p~~rva~i~~s~~~---  309 (567)
T 1qks_A          236 IKIGS-EARSIETSKMEGWE--DKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYR---  309 (567)
T ss_dssp             EECCS-EEEEEEECCSTTCT--TTEEEEEEEETTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSS---
T ss_pred             EecCC-CCceeEEccccCCC--CCEEEEEEccCCeEEEEECCCCcEEEEEeccccccccccccCCCceEEEEEcCCC---
Confidence            54333 35789999    57  555554 4556999999965433222111110       0212 45556655542   


Q ss_pred             ceeecccCCCceeEEEeeCCCcEEEEEEecCccccccccccccCCCceeEEEeeCCCCCCccEE-EEEecCCeEEEEEec
Q 022111          165 ALVGLGLLDPVQKLASCGCDNTVKVWKMYNGIWKMDCFPALQMHSDWVRSVAWAPNLGLPKSTI-ASASQDGTVVIWTCA  243 (302)
Q Consensus       165 ~~~~~~~~~~~~~l~s~~~D~~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~l-~s~s~D~~i~iwd~~  243 (302)
                                ..++++...++.|.++|..+... +. ... ........++.|+|++    ++| ++...++.|.++|..
T Consensus       310 ----------~~~vv~~~~~g~v~~vd~~~~~~-~~-v~~-i~~~~~~~d~~~~pdg----r~~~va~~~sn~V~ViD~~  372 (567)
T 1qks_A          310 ----------PEFIVNVKETGKILLVDYTDLNN-LK-TTE-ISAERFLHDGGLDGSH----RYFITAANARNKLVVIDTK  372 (567)
T ss_dssp             ----------SEEEEEETTTTEEEEEETTCSSE-EE-EEE-EECCSSEEEEEECTTS----CEEEEEEGGGTEEEEEETT
T ss_pred             ----------CEEEEEecCCCeEEEEecCCCcc-ce-eee-eeccccccCceECCCC----CEEEEEeCCCCeEEEEECC
Confidence                      35677777789999998754321 01 111 1233456789999996    444 555568899999987


Q ss_pred             cCCcceeeeeec--cCCCcEEEEE-EccCC-CEEEEe--cCCceEEeeecC
Q 022111          244 KEGEQWEGRVLK--DFKTPVWSVS-WSLTG-NLLAVA--DANNVTLWKEAV  288 (302)
Q Consensus       244 ~~~~~~~~~~~~--~~~~~v~~~~-~spdg-~~la~~--~~d~i~~w~~~~  288 (302)
                      +....  ..+..  ....+-.... ++|++ ...++.  +++.|.+++...
T Consensus       373 t~kl~--~~i~vgg~~Phpg~g~~~~~p~~g~v~~t~~~g~~~Vsvid~~~  421 (567)
T 1qks_A          373 EGKLV--AIEDTGGQTPHPGRGANFVHPTFGPVWATSHMGDDSVALIGTDP  421 (567)
T ss_dssp             TTEEE--EEEECSSSSBCCTTCEEEEETTTEEEEEEEBSSSSEEEEEECCT
T ss_pred             CCcEE--EEEeccCcCCCCccceeeECCCCCcEEEeCCCCCCeEEEecCCC
Confidence            64311  11111  1111111222 57875 444554  234799999754

>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}

Probab=99.06  E-value=9.7e-08  Score=81.31  Aligned_cols=233  Identities=7%  Similarity=-0.026  Sum_probs=133.0

Q ss_pred             ccceeEEEEccCCC-EEEEeeCCCcEEEEeecCCCceEEEEecCcccCeEEEEeeCCCCCCEEEEEeCCCeEEEEEcCCC
Q 022111           11 EDTVHDVAMDFYGK-RLATASSDSSIKIIGLSNSASQHLATLKGHRGPVWQVAWAHPKFGSILASCSYDGQVIIWKEGNQ   89 (302)
Q Consensus        11 ~~~v~~~~~s~~~~-~l~s~~~d~~v~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~s~D~~i~iwd~~~~   89 (302)
                      .....+..|+++++ .+++...++.|..|+... .   ...+..+...+..+++.++  |+++++...++.|.+|+.. +
T Consensus        44 ~~~~egp~~~~~g~~l~~~d~~~~~i~~~~~~g-~---~~~~~~~~~~~~gl~~d~d--G~l~v~~~~~~~v~~~~~~-g  116 (305)
T 3dr2_A           44 ATWSEGPAWWEAQRTLVWSDLVGRRVLGWREDG-T---VDVLLDATAFTNGNAVDAQ--QRLVHCEHGRRAITRSDAD-G  116 (305)
T ss_dssp             CSSEEEEEEEGGGTEEEEEETTTTEEEEEETTS-C---EEEEEESCSCEEEEEECTT--SCEEEEETTTTEEEEECTT-S
T ss_pred             CcCccCCeEeCCCCEEEEEECCCCEEEEEeCCC-C---EEEEeCCCCccceeeECCC--CCEEEEECCCCEEEEECCC-C
Confidence            33456788999998 566666788999998632 2   2334445567888998753  7776655566889999874 3


Q ss_pred             CceeEEE-EecCC-CCCeeEEEecCCCCCcEEEE----Eec-------------CCcEEEEEecCCCCeeeeeecccCCC
Q 022111           90 NDWTQAH-TFNDH-KSSVNSIAWAPHELGLSLAC----GSS-------------DGNISVFTATADGGWDTTRIDQAHPV  150 (302)
Q Consensus        90 ~~~~~~~-~~~~h-~~~i~~l~~~pd~~~~~l~s----g~~-------------d~~v~~~~~~~~~~~~~~~~~~~h~~  150 (302)
                      . ...+. ...+. ...++.+++.|+  |.++++    |..             .+.|..|+... +......    ...
T Consensus       117 ~-~~~~~~~~~~~~~~~~~~i~~d~d--G~l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~~-g~~~~~~----~~~  188 (305)
T 3dr2_A          117 Q-AHLLVGRYAGKRLNSPNDLIVARD--GAIWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPDG-SPLQRMA----DLD  188 (305)
T ss_dssp             C-EEEEECEETTEECSCCCCEEECTT--SCEEEECCSGGGSCGGGSCCCCCSSSCEEEEEECSSS-CCCEEEE----EES
T ss_pred             C-EEEEEeccCCCccCCCCCEEECCC--CCEEEeCcCCCccccccccccccccCCCeEEEEcCCC-CcEEEEe----cCC
Confidence            2 22111 11111 234678999887  666665    332             13344444322 2222111    122


Q ss_pred             CeEEEEeCCCCCCCceeecccCCCceeEEEeeCC------CcEEEEEEecCcccccccccc-ccCCCceeEEEeeCCCCC
Q 022111          151 GVTSVSWAPAMAPGALVGLGLLDPVQKLASCGCD------NTVKVWKMYNGIWKMDCFPAL-QMHSDWVRSVAWAPNLGL  223 (302)
Q Consensus       151 ~v~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~D------~~v~iwd~~~~~~~~~~~~~~-~~h~~~v~~v~~~p~~~~  223 (302)
                      ....++|+|++              +.|+.+...      +.|.+||+....  +.....+ .........+++.+++  
T Consensus       189 ~p~gl~~spdg--------------~~lyv~~~~~~~~~~~~i~~~~~~~~~--l~~~~~~~~~~~~~pdgi~~d~~G--  250 (305)
T 3dr2_A          189 HPNGLAFSPDE--------------QTLYVSQTPEQGHGSVEITAFAWRDGA--LHDRRHFASVPDGLPDGFCVDRGG--  250 (305)
T ss_dssp             SEEEEEECTTS--------------SEEEEEECCC---CCCEEEEEEEETTE--EEEEEEEECCSSSCCCSEEECTTS--
T ss_pred             CCcceEEcCCC--------------CEEEEEecCCcCCCCCEEEEEEecCCC--ccCCeEEEECCCCCCCeEEECCCC--
Confidence            35678888864              444444433      689999987542  1100111 1122334567888885  


Q ss_pred             CccEEEEEecCCeEEEEEeccCCcceeeeeeccCCCcEEEEEEccCCCEEEEecCCceEEee
Q 022111          224 PKSTIASASQDGTVVIWTCAKEGEQWEGRVLKDFKTPVWSVSWSLTGNLLAVADANNVTLWK  285 (302)
Q Consensus       224 ~~~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~la~~~~d~i~~w~  285 (302)
                        + |-.++.+ .|.+|+....   ....+ . ....+.+++|+|+++.|.++..+++...+
T Consensus       251 --~-lwv~~~~-gv~~~~~~g~---~~~~~-~-~~~~~~~~~f~~d~~~L~it~~~~l~~~~  303 (305)
T 3dr2_A          251 --W-LWSSSGT-GVCVFDSDGQ---LLGHI-P-TPGTASNCTFDQAQQRLFITGGPCLWMLP  303 (305)
T ss_dssp             --C-EEECCSS-EEEEECTTSC---EEEEE-E-CSSCCCEEEECTTSCEEEEEETTEEEEEE
T ss_pred             --C-EEEecCC-cEEEECCCCC---EEEEE-E-CCCceeEEEEeCCCCEEEEEcCCeEEEEE
Confidence              4 3344444 4888987422   11122 1 12357889999999888777777655443

>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}

Probab=99.06  E-value=6.8e-08  Score=83.30  Aligned_cols=217  Identities=7%  Similarity=-0.088  Sum_probs=131.2

Q ss_pred             CCCcEEEEeecCCCceEEEEec------CcccCeEEEEeeCCCCCCEEEEEeCCCeEEEEEcCCCCceeEEEEecCCCCC
Q 022111           31 SDSSIKIIGLSNSASQHLATLK------GHRGPVWQVAWAHPKFGSILASCSYDGQVIIWKEGNQNDWTQAHTFNDHKSS  104 (302)
Q Consensus        31 ~d~~v~lw~~~~~~~~~~~~~~------~h~~~v~~v~~~~~~~~~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~h~~~  104 (302)
                      .+++|.++|....  +....+.      ........+.+..   ++++++...+++|.+||..+..   .+.++. ....
T Consensus        15 ~~~~l~~~d~~t~--~~~~~i~~~~n~~~lg~~~~~i~~~~---~~lyv~~~~~~~v~viD~~t~~---~~~~i~-~~~~   85 (328)
T 3dsm_A           15 SNATLSYYDPATC--EVENEVFYRANGFKLGDVAQSMVIRD---GIGWIVVNNSHVIFAIDINTFK---EVGRIT-GFTS   85 (328)
T ss_dssp             CCBEEEEEETTTT--EEECSHHHHHHSSCCBSCEEEEEEET---TEEEEEEGGGTEEEEEETTTCC---EEEEEE-CCSS
T ss_pred             CCceEEEEECCCC--EEhhhhHhhhcCcccCccceEEEEEC---CEEEEEEcCCCEEEEEECcccE---EEEEcC-CCCC
Confidence            4789999998653  2222220      1123456777742   5677777778999999997763   444554 3466


Q ss_pred             eeEEEecCCCCCcEEEEEecCCcEEEEEecCCCCeeeeeecccC----CCCeEEEEeCCCCCCCceeecccCCCceeEEE
Q 022111          105 VNSIAWAPHELGLSLACGSSDGNISVFTATADGGWDTTRIDQAH----PVGVTSVSWAPAMAPGALVGLGLLDPVQKLAS  180 (302)
Q Consensus       105 i~~l~~~pd~~~~~l~sg~~d~~v~~~~~~~~~~~~~~~~~~~h----~~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~s  180 (302)
                      ...++++|+  +...++...++.|.+||..+....  ..+..+.    ......+++               +.+..+++
T Consensus        86 p~~i~~~~~--g~lyv~~~~~~~v~~iD~~t~~~~--~~i~~g~~~~~~~~p~~i~~---------------~~~~lyv~  146 (328)
T 3dsm_A           86 PRYIHFLSD--EKAYVTQIWDYRIFIINPKTYEIT--GYIECPDMDMESGSTEQMVQ---------------YGKYVYVN  146 (328)
T ss_dssp             EEEEEEEET--TEEEEEEBSCSEEEEEETTTTEEE--EEEECTTCCTTTCBCCCEEE---------------ETTEEEEE
T ss_pred             CcEEEEeCC--CeEEEEECCCCeEEEEECCCCeEE--EEEEcCCccccCCCcceEEE---------------ECCEEEEE
Confidence            889999887  544455448899999997643211  1121111    001222333               12355555


Q ss_pred             ee-CCCcEEEEEEecCccccccccccccCCCceeEEEeeCCCCCCccEEEEEecC----------CeEEEEEeccCCcce
Q 022111          181 CG-CDNTVKVWKMYNGIWKMDCFPALQMHSDWVRSVAWAPNLGLPKSTIASASQD----------GTVVIWTCAKEGEQW  249 (302)
Q Consensus       181 ~~-~D~~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~l~s~s~D----------~~i~iwd~~~~~~~~  249 (302)
                      .. .++.|.++|+.++..    ...+.. ......+.++|++    +.+++...+          +.|.++|..+..  .
T Consensus       147 ~~~~~~~v~viD~~t~~~----~~~i~~-g~~p~~i~~~~dG----~l~v~~~~~~~~~~~~~~~~~v~~id~~t~~--v  215 (328)
T 3dsm_A          147 CWSYQNRILKIDTETDKV----VDELTI-GIQPTSLVMDKYN----KMWTITDGGYEGSPYGYEAPSLYRIDAETFT--V  215 (328)
T ss_dssp             ECTTCCEEEEEETTTTEE----EEEEEC-SSCBCCCEECTTS----EEEEEBCCBCTTCSSCBCCCEEEEEETTTTE--E
T ss_pred             cCCCCCEEEEEECCCCeE----EEEEEc-CCCccceEEcCCC----CEEEEECCCccCCccccCCceEEEEECCCCe--E
Confidence            54 588999999887632    122221 2234678889985    566666554          789999986532  1


Q ss_pred             eeeeeccCCCcEEEEEEccCCCEEEEecCCceEEeeec
Q 022111          250 EGRVLKDFKTPVWSVSWSLTGNLLAVADANNVTLWKEA  287 (302)
Q Consensus       250 ~~~~~~~~~~~v~~~~~spdg~~la~~~~d~i~~w~~~  287 (302)
                      ...+..........++|+||+++|.++.. .|.+||..
T Consensus       216 ~~~~~~~~g~~p~~la~~~d~~~lyv~~~-~v~~~d~~  252 (328)
T 3dsm_A          216 EKQFKFKLGDWPSEVQLNGTRDTLYWINN-DIWRMPVE  252 (328)
T ss_dssp             EEEEECCTTCCCEEEEECTTSCEEEEESS-SEEEEETT
T ss_pred             EEEEecCCCCCceeEEEecCCCEEEEEcc-EEEEEECC
Confidence            11221111236889999999999888866 78888864

>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}

Probab=99.02  E-value=2.6e-07  Score=80.12  Aligned_cols=239  Identities=9%  Similarity=0.063  Sum_probs=139.5

Q ss_pred             cceeEEEEccCCCEEEEee--CCCcEEEEeecCCCceEEEEe-------cCcccCeEEEEeeCCCCCCEEEEEeC-----
Q 022111           12 DTVHDVAMDFYGKRLATAS--SDSSIKIIGLSNSASQHLATL-------KGHRGPVWQVAWAHPKFGSILASCSY-----   77 (302)
Q Consensus        12 ~~v~~~~~s~~~~~l~s~~--~d~~v~lw~~~~~~~~~~~~~-------~~h~~~v~~v~~~~~~~~~~l~s~s~-----   77 (302)
                      ..+..++++++|+.+++..  .++.++||.+..  ++ +..+       .+|...+..|++.++  ++++++-..     
T Consensus        17 ~~p~~va~~~~g~~~v~~~~~~~~~~~l~~~~~--g~-~~~~p~~~~~~~~~~~~p~gv~~d~~--g~L~v~D~g~~~~~   91 (343)
T 2qe8_A           17 LAPGNITLTPDGRLFLSLHQFYQPEMQVAELTQ--DG-LIPFPPQSGNAIITFDTVLGIKSDGN--GIVWMLDNGNQSKS   91 (343)
T ss_dssp             SCEEEEEECTTSCEEEEECGGGCCSCSEEEEET--TE-EEESCCCCSSCCCCCSCEEEEEECSS--SEEEEEECHHHHTS
T ss_pred             CCcceEEECCCCCEEEEeCCCCCCceEEEEECC--CC-eecCCCcccCcccceeEeeEEEEcCC--CcEEEEcCCCCcCC
Confidence            5688899999999988853  234367777652  22 2222       235567899999753  666655433     


Q ss_pred             CCeEEEEEcCCCCceeEEEEecC------CCCCeeEEEecCCCCCcEEEEEe---cCCcEEEEEecCCCCeeeeeecccC
Q 022111           78 DGQVIIWKEGNQNDWTQAHTFND------HKSSVNSIAWAPHELGLSLACGS---SDGNISVFTATADGGWDTTRIDQAH  148 (302)
Q Consensus        78 D~~i~iwd~~~~~~~~~~~~~~~------h~~~i~~l~~~pd~~~~~l~sg~---~d~~v~~~~~~~~~~~~~~~~~~~h  148 (302)
                      +..|.+||+.++.   ....+..      +...+..+++.|+. +..+++-.   .++.|.+||..+...+..  + ..|
T Consensus        92 ~~~i~~~d~~tg~---~~~~~~~~~~~~~~~~~~~~v~vd~~~-g~~yvtd~~~~~~~~i~v~d~~~g~~~r~--~-~~~  164 (343)
T 2qe8_A           92 VPKLVAWDTLNNQ---LSRVIYLPPPITLSNSFVNDLAVDLIH-NFVYISDPAPDDKAALIRVDLQTGLAARV--L-QGY  164 (343)
T ss_dssp             CCEEEEEETTTTE---EEEEEECCTTTSCTTCCCCEEEEETTT-TEEEEEECCSGGGCEEEEEETTTCCEEEE--C-TTC
T ss_pred             CCeEEEEECCCCe---EEEEEECChhhcccccccceEEEecCC-CEEEEEcCccCCCCeEEEEECCCCCEEEE--e-cCC
Confidence            5789999987653   2333321      22456899998763 44555555   678999999764322211  1 111


Q ss_pred             C-----------------------------CCeEEEEeCCCCCCCceeecccCCCceeEEEeeCCCcEEEEEEecCcc--
Q 022111          149 P-----------------------------VGVTSVSWAPAMAPGALVGLGLLDPVQKLASCGCDNTVKVWKMYNGIW--  197 (302)
Q Consensus       149 ~-----------------------------~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~D~~v~iwd~~~~~~--  197 (302)
                      .                             ..+..++|+|              +++.|+.+..++. ++|.+.....  
T Consensus       165 ~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~~~gia~s~--------------dg~~ly~~~~~~~-~l~~~~~~~~~~  229 (343)
T 2qe8_A          165 PGIAPEDIDLVIDGVPVQIGQPDGTVIRPHLGVNGIVLDA--------------ENEWLYLSPMHST-SMYRIKSADLSN  229 (343)
T ss_dssp             TTTSCCSCCCEETTEECBEECTTSCEECCCCCEEEEEECT--------------TSCEEEEEESSCS-EEEEEEHHHHTC
T ss_pred             CcccccccceeECCEEEEeccCCCceeceecccceeEecc--------------CCCEEEEEeCCCC-eEEEEEHHHhcC
Confidence            1                             1123344444              4566666655553 5555432100  


Q ss_pred             ----ccccccc--cccCCCceeEEEeeCCCCCCccEEEEEecCCeEEEEEeccCCcceeeeeec-cCCCcEEEEEEccCC
Q 022111          198 ----KMDCFPA--LQMHSDWVRSVAWAPNLGLPKSTIASASQDGTVVIWTCAKEGEQWEGRVLK-DFKTPVWSVSWSLTG  270 (302)
Q Consensus       198 ----~~~~~~~--~~~h~~~v~~v~~~p~~~~~~~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~-~~~~~v~~~~~spdg  270 (302)
                          .......  ..++......+++++++    ..+++...++.|.+||....  ... .+.. .....+.+++|.++|
T Consensus       230 ~~~~~~~~~~~~~~~g~~g~pdgia~d~~G----~l~va~~~~~~V~~~d~~~G--~~~-~~~~~~~~~~p~~va~~~~g  302 (343)
T 2qe8_A          230 LQLTDAELGSKIERYSEKPICDGISIDKDH----NIYVGDLAHSAIGVITSADR--AYK-LLVTDEKLSWTDSFNFGSDG  302 (343)
T ss_dssp             TTCCHHHHHTTCEEEEECCSCSCEEECTTC----CEEEEEGGGTEEEEEETTTT--EEE-EEEECGGGSCEEEEEECTTS
T ss_pred             CCCChhhhhcceEecccCCCCceEEECCCC----CEEEEccCCCeEEEEECCCC--CEE-EEEECCceecCCeeEECCCC
Confidence                0000011  11344456678999885    77888889999999997321  111 1211 113458899999999


Q ss_pred             CEEEEecCC-ceEEe
Q 022111          271 NLLAVADAN-NVTLW  284 (302)
Q Consensus       271 ~~la~~~~d-~i~~w  284 (302)
                      +++++..+. .+.+|
T Consensus       303 ~l~v~~~~~~~~~~f  317 (343)
T 2qe8_A          303 YLYFDCNQLHHSAPL  317 (343)
T ss_dssp             CEEEEECCGGGSGGG
T ss_pred             cEEEEeCcccccccc
Confidence            888887654 44434

>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...

Probab=99.00  E-value=1.1e-07  Score=80.61  Aligned_cols=201  Identities=7%  Similarity=0.080  Sum_probs=121.0

Q ss_pred             cccceeEEEEccC-CCEEEEeeCCCcEEEEeecCCCceEE-EEe-cC-cccCeEEEEeeCCCCCCEEEEEeCC-------
Q 022111           10 HEDTVHDVAMDFY-GKRLATASSDSSIKIIGLSNSASQHL-ATL-KG-HRGPVWQVAWAHPKFGSILASCSYD-------   78 (302)
Q Consensus        10 h~~~v~~~~~s~~-~~~l~s~~~d~~v~lw~~~~~~~~~~-~~~-~~-h~~~v~~v~~~~~~~~~~l~s~s~D-------   78 (302)
                      +...+.+++++++ ++++++ +....|.+|+.. +....+ ... .+ +...+.++++.+  +|+++++...+       
T Consensus        69 ~~~~~~~i~~~~~~g~l~v~-~~~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~~~i~~d~--~g~l~v~~~~~~~~~~~~  144 (314)
T 1pjx_A           69 YGGIPAGCQCDRDANQLFVA-DMRLGLLVVQTD-GTFEEIAKKDSEGRRMQGCNDCAFDY--EGNLWITAPAGEVAPADY  144 (314)
T ss_dssp             EECCEEEEEECSSSSEEEEE-ETTTEEEEEETT-SCEEECCSBCTTSCBCBCCCEEEECT--TSCEEEEECBCBCTTSCC
T ss_pred             CCCCCceEEEecCCCcEEEE-ECCCCEEEEeCC-CCEEEEEeccCCCccccCCcCEEECC--CCCEEEEecCcccccccc
Confidence            4467888999999 765554 444578888876 332211 111 11 223578899865  37777776655       


Q ss_pred             --------CeEEEEEcCCCCceeEEEEecCCCCCeeEEEec----CCCCCcE-EEEEecCCcEEEEEecCCCCeee----
Q 022111           79 --------GQVIIWKEGNQNDWTQAHTFNDHKSSVNSIAWA----PHELGLS-LACGSSDGNISVFTATADGGWDT----  141 (302)
Q Consensus        79 --------~~i~iwd~~~~~~~~~~~~~~~h~~~i~~l~~~----pd~~~~~-l~sg~~d~~v~~~~~~~~~~~~~----  141 (302)
                              +.|..++.. + ...   .+..+......++|+    |+  +.. +++...++.|.+|+....+....    
T Consensus       145 ~~~~~~~~~~l~~~~~~-g-~~~---~~~~~~~~~~~i~~~~~~d~d--g~~l~v~~~~~~~i~~~~~~~~g~~~~~~~~  217 (314)
T 1pjx_A          145 TRSMQEKFGSIYCFTTD-G-QMI---QVDTAFQFPNGIAVRHMNDGR--PYQLIVAETPTKKLWSYDIKGPAKIENKKVW  217 (314)
T ss_dssp             CBTTSSSCEEEEEECTT-S-CEE---EEEEEESSEEEEEEEECTTSC--EEEEEEEETTTTEEEEEEEEETTEEEEEEEE
T ss_pred             cccccCCCCeEEEECCC-C-CEE---EeccCCCCcceEEEecccCCC--CCEEEEEECCCCeEEEEECCCCCccccceEE
Confidence                    455555543 2 211   122233456889999    87  544 44555678999998753222111    


Q ss_pred             eeecccCC-CCeEEEEeCCCCCCCceeecccCCCceeEEEeeCCCcEEEEEEecCccccccccccccCCCceeEEEeeCC
Q 022111          142 TRIDQAHP-VGVTSVSWAPAMAPGALVGLGLLDPVQKLASCGCDNTVKVWKMYNGIWKMDCFPALQMHSDWVRSVAWAPN  220 (302)
Q Consensus       142 ~~~~~~h~-~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~D~~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~~~p~  220 (302)
                      ..+. .+. .....++++++              +.++++...++.|.+||..++.    ....+..+...+.+++|+|+
T Consensus       218 ~~~~-~~~~~~p~~i~~d~~--------------G~l~v~~~~~~~i~~~d~~~g~----~~~~~~~~~~~~~~i~~~~d  278 (314)
T 1pjx_A          218 GHIP-GTHEGGADGMDFDED--------------NNLLVANWGSSHIEVFGPDGGQ----PKMRIRCPFEKPSNLHFKPQ  278 (314)
T ss_dssp             EECC-CCSSCEEEEEEEBTT--------------CCEEEEEETTTEEEEECTTCBS----CSEEEECSSSCEEEEEECTT
T ss_pred             EECC-CCCCCCCCceEECCC--------------CCEEEEEcCCCEEEEEcCCCCc----EeEEEeCCCCCceeEEECCC
Confidence            1111 122 33556666654              4667777778899999976442    22334445578999999998


Q ss_pred             CCCCcc-EEEEEecCCeEEEEEecc
Q 022111          221 LGLPKS-TIASASQDGTVVIWTCAK  244 (302)
Q Consensus       221 ~~~~~~-~l~s~s~D~~i~iwd~~~  244 (302)
                      +    + .+++...++.|..|++..
T Consensus       279 g----~~l~v~~~~~~~l~~~~~~~  299 (314)
T 1pjx_A          279 T----KTIFVTEHENNAVWKFEWQR  299 (314)
T ss_dssp             S----SEEEEEETTTTEEEEEECSS
T ss_pred             C----CEEEEEeCCCCeEEEEeCCC
Confidence            5    5 556666778999998764

>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*

Probab=98.91  E-value=5.6e-06  Score=72.63  Aligned_cols=239  Identities=10%  Similarity=0.039  Sum_probs=131.5

Q ss_pred             EEEEccCCCEEEEee----------CCCcEEEEeecCCCceEEEEecCc-------ccCeEEEEeeCCCCCCEEEEEeC-
Q 022111           16 DVAMDFYGKRLATAS----------SDSSIKIIGLSNSASQHLATLKGH-------RGPVWQVAWAHPKFGSILASCSY-   77 (302)
Q Consensus        16 ~~~~s~~~~~l~s~~----------~d~~v~lw~~~~~~~~~~~~~~~h-------~~~v~~v~~~~~~~~~~l~s~s~-   77 (302)
                      .+.++|||++|+.+.          .++.|.+||...  .+.+..+.--       ...-..+.|+++  |++|+.+.. 
T Consensus        70 ~i~~spDg~~lyv~n~~~~~~~rg~~~~~v~viD~~t--~~~~~~i~~~~~~~~~~g~~p~~~~~spD--G~~l~v~n~~  145 (373)
T 2mad_H           70 NPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPVT--FLPIADIELPDAPRFDVGPYSWMNANTPN--NADLLFFQFA  145 (373)
T ss_pred             CeEECCCCCEEEEEeccccccccCCCCCeEEEEECCC--CcEEEEEECCCccccccCCCccceEECCC--CCEEEEEecC
Confidence            789999999998875          367899999854  2333332110       112346888764  888877764 


Q ss_pred             -CCeEEEEEcCCCCceeEEEE-ecCCCCCeeEEEecCCCCCcEEEEEecCCcEEEEEecCCCCeeeeeecc--cCCCCe-
Q 022111           78 -DGQVIIWKEGNQNDWTQAHT-FNDHKSSVNSIAWAPHELGLSLACGSSDGNISVFTATADGGWDTTRIDQ--AHPVGV-  152 (302)
Q Consensus        78 -D~~i~iwd~~~~~~~~~~~~-~~~h~~~i~~l~~~pd~~~~~l~sg~~d~~v~~~~~~~~~~~~~~~~~~--~h~~~v-  152 (302)
                       +.+|.++| .++.   ...+ +...    .++.+.|+.. ..+++.+.|+.+.+++. ............  ....++ 
T Consensus       146 ~~~~v~viD-~t~~---~~~~~i~~~----~~~~~~~~~~-~~~~~~~~dg~~~~vd~-~g~~~~~~~~~~~~~~~~p~~  215 (373)
T 2mad_H          146 AGPAVGLVV-QGGS---SDDQLLSSP----TCYHIHPGAP-STFYLLCAQGGLAKTDH-AGGAAGAGLVGAMLTAAQNLL  215 (373)
T ss_pred             CCCeEEEEE-CCCC---EEeEEcCCC----ceEEEEeCCC-ceEEEEcCCCCEEEEEC-CCcEEEEEeccccccCCccee
Confidence             57899999 7653   3344 3311    2344556532 35666778899999887 432221110000  000110 


Q ss_pred             EEEEeCCCCCCCceeecccCCCceeEEEeeCCCcEEEEEEecCccccccccccc----------cCCCceeEEEeeCCCC
Q 022111          153 TSVSWAPAMAPGALVGLGLLDPVQKLASCGCDNTVKVWKMYNGIWKMDCFPALQ----------MHSDWVRSVAWAPNLG  222 (302)
Q Consensus       153 ~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~D~~v~iwd~~~~~~~~~~~~~~~----------~h~~~v~~v~~~p~~~  222 (302)
                      ....+.++             .+..++.. ..+.+.+.|+.+....  ....+.          -......-+.++|++ 
T Consensus       216 ~~~~~~~~-------------~~~~~~~~-~~~~v~vid~~~~~~~--v~~~~~~~~~~~~~~~~~p~g~~~~~~s~d~-  278 (373)
T 2mad_H          216 TQPAQANK-------------SGRIVWPV-YSGKILQADISAAGAT--NKAPIDALSGGRKADTWRPGGWQQVAYLKSS-  278 (373)
T ss_pred             ecceeEec-------------CCEEEEEc-CCceEEEEeccCCcce--EeeeeeecCCcccccceecCceEeEEECCCC-
Confidence            11122222             12333333 5678888888643211  011111          012223447788886 


Q ss_pred             CCccEEEEEe---------cCCeEEEEEeccCCcceeeeeeccCCCcEEEEEEccCCC-EEEEec--CCceEEeeecCCc
Q 022111          223 LPKSTIASAS---------QDGTVVIWTCAKEGEQWEGRVLKDFKTPVWSVSWSLTGN-LLAVAD--ANNVTLWKEAVDG  290 (302)
Q Consensus       223 ~~~~~l~s~s---------~D~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~spdg~-~la~~~--~d~i~~w~~~~~~  290 (302)
                        +..+++..         .++.|.+.|..+...  ...+  ......++++|+|||+ ++.++.  ++.|.++|.....
T Consensus       279 --~~lyV~~~~~~~~~~~~~~~~V~VID~~t~~v--v~~i--~~g~~p~~i~~s~Dg~~~l~v~~~~~~~V~ViD~~t~~  352 (373)
T 2mad_H          279 --DGIYLLTSEQSAWKLHAAAKEVTSVTGLVGQT--SSQI--SLGHDVDAISVAQDGGPDLYALSAGTEVLHIYDAGAGD  352 (373)
T ss_pred             --CEEEEEeccCCcccccCCCCeEEEEECCCCEE--EEEE--ECCCCcCeEEECCCCCeEEEEEcCCCCeEEEEECCCCC
Confidence              23333332         235788888865421  1122  2234588999999999 677765  3479999986544


Q ss_pred             e
Q 022111          291 E  291 (302)
Q Consensus       291 ~  291 (302)
                      .
T Consensus       353 v  353 (373)
T 2mad_H          353 Q  353 (373)
T ss_pred             E
Confidence            3

>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}

Probab=98.88  E-value=7.7e-07  Score=79.17  Aligned_cols=204  Identities=11%  Similarity=-0.011  Sum_probs=116.8

Q ss_pred             CeEEEEeeCCCCCCEEEEEeCCCeEEEEEcCCCCceeEEEEecCCCCCeeEEEecCCCCCcEEEEEecCC--cEEEEEec
Q 022111           57 PVWQVAWAHPKFGSILASCSYDGQVIIWKEGNQNDWTQAHTFNDHKSSVNSIAWAPHELGLSLACGSSDG--NISVFTAT  134 (302)
Q Consensus        57 ~v~~v~~~~~~~~~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~h~~~i~~l~~~pd~~~~~l~sg~~d~--~v~~~~~~  134 (302)
                      ....|+|.+  +++++++...++.|+.||..++.    +..+........ ++|+|+  +..|+.++.++  .|.+++..
T Consensus       132 ~P~~la~d~--~g~lyv~d~~~~~I~~id~~~g~----~~~~~~~~~~~~-ia~~~~--g~~l~~~d~~~~~~I~~~d~~  202 (409)
T 3hrp_A          132 YMWGIAAVG--NNTVLAYQRDDPRVRLISVDDNK----VTTVHPGFKGGK-PAVTKD--KQRVYSIGWEGTHTVYVYMKA  202 (409)
T ss_dssp             CEEEEEECS--TTEEEEEETTTTEEEEEETTTTE----EEEEEETCCBCB-CEECTT--SSEEEEEBSSTTCEEEEEEGG
T ss_pred             CceEEEEeC--CCCEEEEecCCCcEEEEECCCCE----EEEeeccCCCCc-eeEecC--CCcEEEEecCCCceEEEEEcC
Confidence            466888875  37788887788999999987542    222211222234 889987  55777777766  67777654


Q ss_pred             CCCCeeee-eecccCCCCeEEEEeCCCCCCCceeecccCCCceeEEEeeCCCcEEEEEEecCccccccccccccCCCce-
Q 022111          135 ADGGWDTT-RIDQAHPVGVTSVSWAPAMAPGALVGLGLLDPVQKLASCGCDNTVKVWKMYNGIWKMDCFPALQMHSDWV-  212 (302)
Q Consensus       135 ~~~~~~~~-~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~D~~v~iwd~~~~~~~~~~~~~~~~h~~~v-  212 (302)
                      ........ ...........+++++|..             +.+++ +..++.|+.||..++...........++...- 
T Consensus       203 ~~~~~~~~g~~~~~~~~~p~~iav~p~~-------------g~lyv-~d~~~~I~~~d~~~~~~~~~~~~~~~g~~~~~P  268 (409)
T 3hrp_A          203 SGWAPTRIGQLGSTFSGKIGAVALDETE-------------EWLYF-VDSNKNFGRFNVKTQEVTLIKQLELSGSLGTNP  268 (409)
T ss_dssp             GTTCEEEEEECCTTSCSCCCBCEECTTS-------------SEEEE-ECTTCEEEEEETTTCCEEEEEECCCCSCCCCSS
T ss_pred             CCceeEEeeeccchhcCCcEEEEEeCCC-------------CeEEE-EECCCcEEEEECCCCCEEEEecccccCCCCCCc
Confidence            32211111 1111122334566666632             34444 66678899999875531110000012222222 


Q ss_pred             -eEEEeeCCCCCCccEEEEEecCCeEEEEEeccCCcceeeee-eccC---------CCcEEEEEEccCCCEEEEec-CC-
Q 022111          213 -RSVAWAPNLGLPKSTIASASQDGTVVIWTCAKEGEQWEGRV-LKDF---------KTPVWSVSWSLTGNLLAVAD-AN-  279 (302)
Q Consensus       213 -~~v~~~p~~~~~~~~l~s~s~D~~i~iwd~~~~~~~~~~~~-~~~~---------~~~v~~~~~spdg~~la~~~-~d-  279 (302)
                       ..++|+|++   +..+++-..++.|+.|+............ ..++         -.....++++|+|+++++-. .+ 
T Consensus       269 ~~~ia~~p~~---g~lyv~d~~~~~I~~~~~~g~~~~~~g~~~~~g~~dg~~~~~~~~~P~gia~d~dG~lyvad~~~~~  345 (409)
T 3hrp_A          269 GPYLIYYFVD---SNFYMSDQNLSSVYKITPDGECEWFCGSATQKTVQDGLREEALFAQPNGMTVDEDGNFYIVDGFKGY  345 (409)
T ss_dssp             CCEEEEETTT---TEEEEEETTTTEEEEECTTCCEEEEEECTTCCSCBCEEGGGCBCSSEEEEEECTTCCEEEEETTTTC
T ss_pred             cccEEEeCCC---CEEEEEeCCCCEEEEEecCCCEEEEEeCCCCCCcCCCcccccEeCCCeEEEEeCCCCEEEEeCCCCC
Confidence             389999963   36777888889999998653210000000 0000         13478999999999666655 55 


Q ss_pred             ceEEeee
Q 022111          280 NVTLWKE  286 (302)
Q Consensus       280 ~i~~w~~  286 (302)
                      .|+.|+.
T Consensus       346 ~I~~~~~  352 (409)
T 3hrp_A          346 CLRKLDI  352 (409)
T ss_dssp             EEEEEET
T ss_pred             EEEEEEC
Confidence            6888884

>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B

Probab=98.84  E-value=9.9e-06  Score=68.50  Aligned_cols=198  Identities=12%  Similarity=0.081  Sum_probs=115.7

Q ss_pred             eEEEEeeCCCCCCEEEEEeCCCeEEEEEcCCCCceeEEEEecCCCCCeeEEEecCCCCCcEEEEEecCCcEEEEEecCCC
Q 022111           58 VWQVAWAHPKFGSILASCSYDGQVIIWKEGNQNDWTQAHTFNDHKSSVNSIAWAPHELGLSLACGSSDGNISVFTATADG  137 (302)
Q Consensus        58 v~~v~~~~~~~~~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~h~~~i~~l~~~pd~~~~~l~sg~~d~~v~~~~~~~~~  137 (302)
                      -.+..|+++ .+.++++...++.|..||..+..    ...+. ....+.++++.|+  +.++++ . ++.|.+||..+. 
T Consensus        15 ~Egp~w~~~-~~~l~~~d~~~~~i~~~d~~~~~----~~~~~-~~~~~~~i~~~~d--G~l~v~-~-~~~l~~~d~~~g-   83 (297)
T 3g4e_A           15 GESPVWEEV-SNSLLFVDIPAKKVCRWDSFTKQ----VQRVT-MDAPVSSVALRQS--GGYVAT-I-GTKFCALNWKEQ-   83 (297)
T ss_dssp             EEEEEEETT-TTEEEEEETTTTEEEEEETTTCC----EEEEE-CSSCEEEEEEBTT--SSEEEE-E-TTEEEEEETTTT-
T ss_pred             ccCCeEECC-CCEEEEEECCCCEEEEEECCCCc----EEEEe-CCCceEEEEECCC--CCEEEE-E-CCeEEEEECCCC-
Confidence            346778764 36778888889999999987643    12222 4567999999988  554444 3 567888886532 


Q ss_pred             Ceee-eeeccc-CCCCeEEEEeCCCCCCCceeecccCCCceeEEEeeC---------CCcEEEEEEecCccccccccccc
Q 022111          138 GWDT-TRIDQA-HPVGVTSVSWAPAMAPGALVGLGLLDPVQKLASCGC---------DNTVKVWKMYNGIWKMDCFPALQ  206 (302)
Q Consensus       138 ~~~~-~~~~~~-h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~---------D~~v~iwd~~~~~~~~~~~~~~~  206 (302)
                      .... ...... ....+..+.++|++              +++++...         .....||.+.... ...   .+.
T Consensus        84 ~~~~~~~~~~~~~~~~~~di~~d~dG--------------~l~~~~~~~~~~~~~~~~~~~~l~~~d~~g-~~~---~~~  145 (297)
T 3g4e_A           84 SAVVLATVDNDKKNNRFNDGKVDPAG--------------RYFAGTMAEETAPAVLERHQGALYSLFPDH-HVK---KYF  145 (297)
T ss_dssp             EEEEEEECCTTCSSEEEEEEEECTTS--------------CEEEEEEECCSBTTBCCTTCEEEEEECTTS-CEE---EEE
T ss_pred             cEEEEEecCCCCCCCCCCCEEECCCC--------------CEEEecCCcccccccccCCCcEEEEEECCC-CEE---EEe
Confidence            2221 111101 11235667777653              44444322         2335666665321 111   112


Q ss_pred             cCCCceeEEEeeCCCCCCccEEEEEecCCeEEEEEecc-CCcceeeeeec---cCCCcEEEEEEccCCCEEEEecCC-ce
Q 022111          207 MHSDWVRSVAWAPNLGLPKSTIASASQDGTVVIWTCAK-EGEQWEGRVLK---DFKTPVWSVSWSLTGNLLAVADAN-NV  281 (302)
Q Consensus       207 ~h~~~v~~v~~~p~~~~~~~~l~s~s~D~~i~iwd~~~-~~~~~~~~~~~---~~~~~v~~~~~spdg~~la~~~~d-~i  281 (302)
                      .+-...+.++|+|++   ...+++.+.++.|.+|++.. .......+...   ........+++.++|++.++...+ .|
T Consensus       146 ~~~~~pngi~~spdg---~~lyv~~~~~~~i~~~~~d~~~G~~~~~~~~~~~~~~~~~p~g~~~d~~G~lwva~~~~~~v  222 (297)
T 3g4e_A          146 DQVDISNGLDWSLDH---KIFYYIDSLSYSVDAFDYDLQTGQISNRRSVYKLEKEEQIPDGMCIDAEGKLWVACYNGGRV  222 (297)
T ss_dssp             EEESBEEEEEECTTS---CEEEEEEGGGTEEEEEEECTTTCCEEEEEEEEECCGGGCEEEEEEEBTTSCEEEEEETTTEE
T ss_pred             eccccccceEEcCCC---CEEEEecCCCCcEEEEeccCCCCcccCcEEEEECCCCCCCCCeeEECCCCCEEEEEcCCCEE
Confidence            223346889999996   23456777789999999852 21111111111   222457889999999887776544 69


Q ss_pred             EEeeec
Q 022111          282 TLWKEA  287 (302)
Q Consensus       282 ~~w~~~  287 (302)
                      .+|+..
T Consensus       223 ~~~d~~  228 (297)
T 3g4e_A          223 IRLDPV  228 (297)
T ss_dssp             EEECTT
T ss_pred             EEEcCC
Confidence            999864

>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...

Probab=98.80  E-value=3.2e-06  Score=74.08  Aligned_cols=246  Identities=12%  Similarity=0.074  Sum_probs=135.3

Q ss_pred             EEEEccCCCEEEEee----------CCCcEEEEeecCCCceEEEEecCc-------ccCeEEEEeeCCCCCCEEEEEeC-
Q 022111           16 DVAMDFYGKRLATAS----------SDSSIKIIGLSNSASQHLATLKGH-------RGPVWQVAWAHPKFGSILASCSY-   77 (302)
Q Consensus        16 ~~~~s~~~~~l~s~~----------~d~~v~lw~~~~~~~~~~~~~~~h-------~~~v~~v~~~~~~~~~~l~s~s~-   77 (302)
                      .+.++|||++|+.+.          .++.|.+||..+.  +.+..+.-.       ...-..+.|+++  |++|..+.. 
T Consensus        82 ~va~spDG~~lyVan~~~~r~~~G~~~~~VsviD~~t~--~v~~~I~v~~g~r~~~g~~P~~~a~spD--Gk~lyVan~~  157 (386)
T 3sjl_D           82 NPVVADDGSFIAHASTVFSRIARGERTDYVEVFDPVTL--LPTADIELPDAPRFLVGTYPWMTSLTPD--GKTLLFYQFS  157 (386)
T ss_dssp             EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTC--CEEEEEEETTCCCCCBSCCGGGEEECTT--SSEEEEEECS
T ss_pred             cEEECCCCCEEEEEcccccccccCCCCCEEEEEECCCC--eEEEEEECCCccccccCCCCceEEEcCC--CCEEEEEEcC
Confidence            389999999887765          3678999998653  334433210       112345788764  787766653 


Q ss_pred             -CCeEEEEEcCCCCceeEEEEecCCCCCeeEEEecCCCCCcEEEEEecCCcEEEEEecCCCCeeeeeecccCC----CCe
Q 022111           78 -DGQVIIWKEGNQNDWTQAHTFNDHKSSVNSIAWAPHELGLSLACGSSDGNISVFTATADGGWDTTRIDQAHP----VGV  152 (302)
Q Consensus        78 -D~~i~iwd~~~~~~~~~~~~~~~h~~~i~~l~~~pd~~~~~l~sg~~d~~v~~~~~~~~~~~~~~~~~~~h~----~~v  152 (302)
                       ++.|.++|..+..   .+.++....    |..+.|.. ...+++.+.||++.+.++...+.... ... .+.    ..+
T Consensus       158 ~~~~VsVID~~t~~---vv~tI~v~g----~~~~~P~g-~~~~~~~~~DG~~~~v~~~~~g~v~~-~~~-~~~~~~~~~~  227 (386)
T 3sjl_D          158 PAPAVGVVDLEGKA---FKRMLDVPD----CYHIFPTA-PDTFFMHCRDGSLAKVAFGTEGTPEI-THT-EVFHPEDEFL  227 (386)
T ss_dssp             SSCEEEEEETTTTE---EEEEEECCS----EEEEEEEE-TTEEEEEETTSCEEEEECCSSSCCEE-EEC-CCCSCTTSCB
T ss_pred             CCCeEEEEECCCCc---EEEEEECCC----cceeecCC-CceeEEECCCCCEEEEECCCCCeEEE-eec-ceeccccccc
Confidence             6899999998763   344443211    12222432 33566778888888888764333211 000 010    000


Q ss_pred             -EEEEeCCCCCCCceeecccCCCceeEEEeeCCCcEEEEEEecCccccccccccc---------c-CCCceeEEEeeCCC
Q 022111          153 -TSVSWAPAMAPGALVGLGLLDPVQKLASCGCDNTVKVWKMYNGIWKMDCFPALQ---------M-HSDWVRSVAWAPNL  221 (302)
Q Consensus       153 -~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~D~~v~iwd~~~~~~~~~~~~~~~---------~-h~~~v~~v~~~p~~  221 (302)
                       ....|.+             .++++++ .+.++.|++.|+.+...+  ....+.         + ..+....++++|++
T Consensus       228 ~~~~~~~~-------------~dG~~~~-vs~~g~V~v~d~~~~~~~--v~~~~~~~~~~~~~~g~~p~g~q~~a~~~~~  291 (386)
T 3sjl_D          228 INHPAYSQ-------------KAGRLVW-PTYTGKIHQIDLSSGDAK--FLPAVEALTEAERADGWRPGGWQQVAYHRAL  291 (386)
T ss_dssp             CSCCEEET-------------TTTEEEE-EBTTSEEEEEECTTSSCE--ECCCEESSCHHHHHTTEEECSSSCEEEETTT
T ss_pred             cccceeEc-------------CCCcEEE-EeCCCEEEEEECCCCcce--eecceeccccccccccccCCCcceeeECCCC
Confidence             0112211             1344433 455789999998654211  111110         0 12233457778886


Q ss_pred             CCCccEEEEEec---------CCeEEEEEeccCCcceeeeeeccCCCcEEEEEEccCCC-EEEEecC--CceEEeeecCC
Q 022111          222 GLPKSTIASASQ---------DGTVVIWTCAKEGEQWEGRVLKDFKTPVWSVSWSLTGN-LLAVADA--NNVTLWKEAVD  289 (302)
Q Consensus       222 ~~~~~~l~s~s~---------D~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~spdg~-~la~~~~--d~i~~w~~~~~  289 (302)
                         +...++-..         ...|-+.|+.+.+.  ..++..  ..++++|+|+|||+ +|.++..  +.|.++|....
T Consensus       292 ---~~lyV~~~~~~~~~hk~~~~~V~viD~~t~kv--~~~i~v--g~~~~~lavs~D~~~~ly~tn~~~~~VsViD~~t~  364 (386)
T 3sjl_D          292 ---DRIYLLVDQRDEWRHKTASRFVVVLDAKTGER--LAKFEM--GHEIDSINVSQDEKPLLYALSTGDKTLYIHDAESG  364 (386)
T ss_dssp             ---TEEEEEEEECCTTCTTSCEEEEEEEETTTCCE--EEEEEE--EEEECEEEECSSSSCEEEEEETTTTEEEEEETTTC
T ss_pred             ---CeEEEEeccccccccCCCCCEEEEEECCCCeE--EEEEEC--CCCcceEEECCCCCeEEEEEcCCCCeEEEEECCCC
Confidence               233333321         24577777765432  122222  24689999999997 6666543  47999998766


Q ss_pred             ceEEEeeec
Q 022111          290 GEWQQVSVV  298 (302)
Q Consensus       290 ~~~~~~~~~  298 (302)
                      ......+..
T Consensus       365 k~~~~i~~~  373 (386)
T 3sjl_D          365 EELRSVNQL  373 (386)
T ss_dssp             CEEEEECCC
T ss_pred             cEEEEecCC
Confidence            555554444

>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}

Probab=98.80  E-value=3.9e-06  Score=74.51  Aligned_cols=230  Identities=12%  Similarity=0.117  Sum_probs=128.2

Q ss_pred             cCCCEEEE-eeCCCcEEEEeecCCC--ceEEEEec--------CcccCeEEEEeeCCCCCCEEEEEeCC------CeEEE
Q 022111           21 FYGKRLAT-ASSDSSIKIIGLSNSA--SQHLATLK--------GHRGPVWQVAWAHPKFGSILASCSYD------GQVII   83 (302)
Q Consensus        21 ~~~~~l~s-~~~d~~v~lw~~~~~~--~~~~~~~~--------~h~~~v~~v~~~~~~~~~~l~s~s~D------~~i~i   83 (302)
                      .++++|.. +-.++.|+++|+...+  .+...++.        +-+ .-..+...++  | +++++..+      +.+.+
T Consensus        93 ~~r~~l~v~~l~s~~I~viD~~t~p~~p~~~k~ie~~~~~~~~g~s-~Ph~~~~~pd--G-i~Vs~~g~~~g~~~g~v~v  168 (462)
T 2ece_A           93 IERRFLIVPGLRSSRIYIIDTKPNPREPKIIKVIEPEEVKKVSGYS-RLHTVHCGPD--A-IYISALGNEEGEGPGGILM  168 (462)
T ss_dssp             CCSCEEEEEBTTTCCEEEEECCSCTTSCEEEEEECHHHHHHHHCEE-EEEEEEECSS--C-EEEEEEEETTSCSCCEEEE
T ss_pred             ccCCEEEEccCCCCeEEEEECCCCCCCceeeeeechhhcccccCCC-cccceeECCC--e-EEEEcCCCcCCCCCCeEEE
Confidence            67776665 5577889999985432  23334441        111 1123444443  6 77777666      78999


Q ss_pred             EEcCCCCceeEEEEecC--CC-CCeeEEEecCCCCCcEEEEEe-------------------cCCcEEEEEecCCCCeee
Q 022111           84 WKEGNQNDWTQAHTFND--HK-SSVNSIAWAPHELGLSLACGS-------------------SDGNISVFTATADGGWDT  141 (302)
Q Consensus        84 wd~~~~~~~~~~~~~~~--h~-~~i~~l~~~pd~~~~~l~sg~-------------------~d~~v~~~~~~~~~~~~~  141 (302)
                      .|.++..   .+.++..  .. ..-..+.|+|+  ++.+++..                   .+.+|.+||+.+..  ..
T Consensus       169 lD~~T~~---v~~~~~~~~~~~~~~Yd~~~~p~--~~~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~~~k--~~  241 (462)
T 2ece_A          169 LDHYSFE---PLGKWEIDRGDQYLAYDFWWNLP--NEVLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLRKRK--RI  241 (462)
T ss_dssp             ECTTTCC---EEEECCSBCTTCCCCCCEEEETT--TTEEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEETTTTE--EE
T ss_pred             EECCCCe---EEEEEccCCCCccccceEEECCC--CCEEEEccCcCccccccccchhhhhhccCCEEEEEECCCCc--Ee
Confidence            9987653   3444431  22 22345788998  44666664                   37899999987532  12


Q ss_pred             eeeccc-CCCCeEEEEe--CCCCCCCceeecccCCCceeEEEee-----CCCcEEEEEEecCccccccc---cc------
Q 022111          142 TRIDQA-HPVGVTSVSW--APAMAPGALVGLGLLDPVQKLASCG-----CDNTVKVWKMYNGIWKMDCF---PA------  204 (302)
Q Consensus       142 ~~~~~~-h~~~v~~~~~--~~~~~~~~~~~~~~~~~~~~l~s~~-----~D~~v~iwd~~~~~~~~~~~---~~------  204 (302)
                      ..+..+ .......+.|  +|++             ...++++.     .+++|.+|....+.+.....   ..      
T Consensus       242 ~tI~vg~~g~~P~~i~f~~~Pdg-------------~~aYV~~e~~~~~Lss~V~v~~~d~g~~~~~~vIdi~~~~v~~~  308 (462)
T 2ece_A          242 HSLTLGEENRMALELRPLHDPTK-------------LMGFINMVVSLKDLSSSIWLWFYEDGKWNAEKVIEIPAEPLEGN  308 (462)
T ss_dssp             EEEESCTTEEEEEEEEECSSTTC-------------CEEEEEEEEETTTCCEEEEEEEEETTEEEEEEEEEECCEECCSS
T ss_pred             eEEecCCCCCccceeEeeECCCC-------------CEEEEEEeeeccCCCceEEEEEecCCceeEEEEEeCCCcccccc
Confidence            222211 1112334444  6653             13345555     67788777665543321110   00      


Q ss_pred             -------cccCCCceeEEEeeCCCCCCccEEEEEecCCeEEEEEeccCCcc-eeeeeecc-C------------CCcEEE
Q 022111          205 -------LQMHSDWVRSVAWAPNLGLPKSTIASASQDGTVVIWTCAKEGEQ-WEGRVLKD-F------------KTPVWS  263 (302)
Q Consensus       205 -------~~~h~~~v~~v~~~p~~~~~~~~l~s~s~D~~i~iwd~~~~~~~-~~~~~~~~-~------------~~~v~~  263 (302)
                             +.+-......|.+|||+.   ...++.-..+.|.++|+...... ....+..+ .            ...-..
T Consensus       309 lp~~~~~f~~~~~~pa~I~lS~DGr---fLYVSnrg~d~VavfdV~d~~~~~lv~~I~tGG~~~~~~~~~G~~~~ggPr~  385 (462)
T 2ece_A          309 LPEILKPFKAVPPLVTDIDISLDDK---FLYLSLWGIGEVRQYDISNPFKPVLTGKVKLGGIFHRADHPAGHKLTGAPQM  385 (462)
T ss_dssp             CCGGGGGGTEECCCCCCEEECTTSC---EEEEEETTTTEEEEEECSSTTSCEEEEEEECBTTTTCBCCTTSCCCCSCCCC
T ss_pred             ccccccccccCCCceeEEEECCCCC---EEEEEeCCCCEEEEEEecCCCCcEEEEEEEeCCeeccccccccccCCCCCCE
Confidence                   111124578899999962   34455556789999998643211 11122111 0            012467


Q ss_pred             EEEccCCCEEEEec
Q 022111          264 VSWSLTGNLLAVAD  277 (302)
Q Consensus       264 ~~~spdg~~la~~~  277 (302)
                      +++||||++|.++.
T Consensus       386 ~~lSpDGk~LyVaN  399 (462)
T 2ece_A          386 LEISRDGRRVYVTN  399 (462)
T ss_dssp             EEECTTSSEEEEEC
T ss_pred             EEEcCCCCEEEEEc
Confidence            99999999999997

>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*

Probab=98.77  E-value=4.6e-07  Score=86.14  Aligned_cols=201  Identities=13%  Similarity=0.077  Sum_probs=115.7

Q ss_pred             CcccCeEEEEeeCCCCCCEEEE-----EeCCCeEEEEEcCCCCceeEEEEecCCCCCeeEEEecCCCCCcEEEEEecCC-
Q 022111           53 GHRGPVWQVAWAHPKFGSILAS-----CSYDGQVIIWKEGNQNDWTQAHTFNDHKSSVNSIAWAPHELGLSLACGSSDG-  126 (302)
Q Consensus        53 ~h~~~v~~v~~~~~~~~~~l~s-----~s~D~~i~iwd~~~~~~~~~~~~~~~h~~~i~~l~~~pd~~~~~l~sg~~d~-  126 (302)
                      +|...+..++|+|+  |++||-     |+...+|++||+.++... .. .+.  ..+...++|+ |  ++.|+.++.+. 
T Consensus       126 ~~~~~l~~~~~SpD--g~~lAy~~~~~G~~~~~i~v~dl~tg~~~-~~-~~~--~~k~~~~~Ws-D--g~~l~y~~~~~~  196 (693)
T 3iuj_A          126 DGTTALDQLSFSRD--GRILAYSLSLAGSDWREIHLMDVESKQPL-ET-PLK--DVKFSGISWL-G--NEGFFYSSYDKP  196 (693)
T ss_dssp             TSCCEEEEEEECTT--SSEEEEEEECSSCCEEEEEEEETTTCSEE-EE-EEE--EEESCCCEEE-T--TTEEEEEESSCC
T ss_pred             CCcEEEEEEEECCC--CCEEEEEEecCCCceEEEEEEECCCCCCC-cc-ccC--CceeccEEEe-C--CCEEEEEEecCc
Confidence            35556788899874  888773     333467999999876421 11 121  1123577899 8  56788777774 


Q ss_pred             ------------cEEEEEecCCCCeeeeeec-cc-CCCCeEEEEeCCCCCCCceeecccCCCceeE-EEee---CCCcEE
Q 022111          127 ------------NISVFTATADGGWDTTRID-QA-HPVGVTSVSWAPAMAPGALVGLGLLDPVQKL-ASCG---CDNTVK  188 (302)
Q Consensus       127 ------------~v~~~~~~~~~~~~~~~~~-~~-h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~l-~s~~---~D~~v~  188 (302)
                                  .|++|++.+.......... .. |...+.++.|+|++              ++| ++.+   .++.|+
T Consensus       197 ~~~~~~~~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~~SpDg--------------~~l~~~~~~~~~~~~i~  262 (693)
T 3iuj_A          197 DGSELSARTDQHKVYFHRLGTAQEDDRLVFGAIPAQHHRYVGATVTEDD--------------RFLLISAANSTSGNRLY  262 (693)
T ss_dssp             C-------CCCCEEEEEETTSCGGGCEEEESCSGGGCCSEEEEEECTTS--------------CEEEEEEESSSSCCEEE
T ss_pred             ccccccccCCCcEEEEEECCCCcccceEEEecCCCCCeEEEEEEEcCCC--------------CEEEEEEccCCCCcEEE
Confidence                        3888887643321111111 12 33446788898874              443 4433   235789


Q ss_pred             EEEEecCccccccccccccCCCceeEEEeeCCCCCCccEEEEEecC---CeEEEEEeccCCc-ceeeeeeccCCCcEEEE
Q 022111          189 VWKMYNGIWKMDCFPALQMHSDWVRSVAWAPNLGLPKSTIASASQD---GTVVIWTCAKEGE-QWEGRVLKDFKTPVWSV  264 (302)
Q Consensus       189 iwd~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~l~s~s~D---~~i~iwd~~~~~~-~~~~~~~~~~~~~v~~~  264 (302)
                      ++|+.++...   ...+..+.+.+... |+|++   +..++....|   +.|..+|+..... .|+ .+ ..+...+.  
T Consensus       263 ~~d~~~~~~~---~~~l~~~~~~~~~~-~~~~g---~~l~~~t~~~~~~~~l~~~d~~~~~~~~~~-~l-~~~~~~~~--  331 (693)
T 3iuj_A          263 VKDLSQENAP---LLTVQGDLDADVSL-VDNKG---STLYLLTNRDAPNRRLVTVDAANPGPAHWR-DL-IPERQQVL--  331 (693)
T ss_dssp             EEETTSTTCC---CEEEECSSSSCEEE-EEEET---TEEEEEECTTCTTCEEEEEETTSCCGGGCE-EE-ECCCSSCE--
T ss_pred             EEECCCCCCc---eEEEeCCCCceEEE-EeccC---CEEEEEECCCCCCCEEEEEeCCCCCccccE-EE-ecCCCCEE--
Confidence            9998765211   22344455555554 66664   2455555444   5688888765321 122 22 23333343  


Q ss_pred             EEccCCCEEEEecCC----ceEEeeec
Q 022111          265 SWSLTGNLLAVADAN----NVTLWKEA  287 (302)
Q Consensus       265 ~~spdg~~la~~~~d----~i~~w~~~  287 (302)
                      .|+|+++.|+....+    .|++|+..
T Consensus       332 ~~s~~g~~lv~~~~~~g~~~l~~~d~~  358 (693)
T 3iuj_A          332 TVHSGSGYLFAEYMVDATARVEQFDYE  358 (693)
T ss_dssp             EEEEETTEEEEEEEETTEEEEEEECTT
T ss_pred             EEEEECCEEEEEEEECCeeEEEEEECC
Confidence            899999988776443    37777754

>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}

Probab=98.73  E-value=2.9e-06  Score=72.09  Aligned_cols=201  Identities=12%  Similarity=0.044  Sum_probs=115.0

Q ss_pred             EEecCcccCeEEEEeeCCCCCC-EEEEEeCCCeEEEEEcCCCCceeEEEEecCCCCCeeEEEecCCCCCcEEEEEecCCc
Q 022111           49 ATLKGHRGPVWQVAWAHPKFGS-ILASCSYDGQVIIWKEGNQNDWTQAHTFNDHKSSVNSIAWAPHELGLSLACGSSDGN  127 (302)
Q Consensus        49 ~~~~~h~~~v~~v~~~~~~~~~-~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~h~~~i~~l~~~pd~~~~~l~sg~~d~~  127 (302)
                      ..+..+........|.++  ++ ++++...++.|..|+.. +.    ...+..+...+..+++.|+  |.++++...++.
T Consensus        38 ~~l~~~~~~~egp~~~~~--g~~l~~~d~~~~~i~~~~~~-g~----~~~~~~~~~~~~gl~~d~d--G~l~v~~~~~~~  108 (305)
T 3dr2_A           38 LTLYDQATWSEGPAWWEA--QRTLVWSDLVGRRVLGWRED-GT----VDVLLDATAFTNGNAVDAQ--QRLVHCEHGRRA  108 (305)
T ss_dssp             EEEECCCSSEEEEEEEGG--GTEEEEEETTTTEEEEEETT-SC----EEEEEESCSCEEEEEECTT--SCEEEEETTTTE
T ss_pred             EEEecCCcCccCCeEeCC--CCEEEEEECCCCEEEEEeCC-CC----EEEEeCCCCccceeeECCC--CCEEEEECCCCE
Confidence            344444445667888764  55 67788888999999873 22    2334445677899999987  666665555678


Q ss_pred             EEEEEecCCCCeeeee-eccc-CCCCeEEEEeCCCCCCCceeecccCCCceeEEE----eeC-------------CCcEE
Q 022111          128 ISVFTATADGGWDTTR-IDQA-HPVGVTSVSWAPAMAPGALVGLGLLDPVQKLAS----CGC-------------DNTVK  188 (302)
Q Consensus       128 v~~~~~~~~~~~~~~~-~~~~-h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~s----~~~-------------D~~v~  188 (302)
                      |.+|+..  +...... .... ....+..+.+.|+              +..++|    |..             .+.|.
T Consensus       109 v~~~~~~--g~~~~~~~~~~~~~~~~~~~i~~d~d--------------G~l~~td~~~g~~~~~~~~~~~~~~~~~~v~  172 (305)
T 3dr2_A          109 ITRSDAD--GQAHLLVGRYAGKRLNSPNDLIVARD--------------GAIWFTDPPFGLRKPSQGCPADPELAHHSVY  172 (305)
T ss_dssp             EEEECTT--SCEEEEECEETTEECSCCCCEEECTT--------------SCEEEECCSGGGSCGGGSCCCCCSSSCEEEE
T ss_pred             EEEECCC--CCEEEEEeccCCCccCCCCCEEECCC--------------CCEEEeCcCCCccccccccccccccCCCeEE
Confidence            8888753  2222111 0001 0122445666654              355554    321             23455


Q ss_pred             EEEEecCccccccccccccCCCceeEEEeeCCCCCCccEEEEEecC------CeEEEEEeccCCcceeeeeecc-CCCcE
Q 022111          189 VWKMYNGIWKMDCFPALQMHSDWVRSVAWAPNLGLPKSTIASASQD------GTVVIWTCAKEGEQWEGRVLKD-FKTPV  261 (302)
Q Consensus       189 iwd~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~l~s~s~D------~~i~iwd~~~~~~~~~~~~~~~-~~~~v  261 (302)
                      .+|..++..  ..   +. .....+.++|+||+    +.|..+...      +.|.+|++.... ......... .....
T Consensus       173 ~~d~~~g~~--~~---~~-~~~~p~gl~~spdg----~~lyv~~~~~~~~~~~~i~~~~~~~~~-l~~~~~~~~~~~~~p  241 (305)
T 3dr2_A          173 RLPPDGSPL--QR---MA-DLDHPNGLAFSPDE----QTLYVSQTPEQGHGSVEITAFAWRDGA-LHDRRHFASVPDGLP  241 (305)
T ss_dssp             EECSSSCCC--EE---EE-EESSEEEEEECTTS----SEEEEEECCC---CCCEEEEEEEETTE-EEEEEEEECCSSSCC
T ss_pred             EEcCCCCcE--EE---Ee-cCCCCcceEEcCCC----CEEEEEecCCcCCCCCEEEEEEecCCC-ccCCeEEEECCCCCC
Confidence            566544421  11   11 23346789999996    545554443      789999986432 111111111 12234


Q ss_pred             EEEEEccCCCEEEEecCCceEEeee
Q 022111          262 WSVSWSLTGNLLAVADANNVTLWKE  286 (302)
Q Consensus       262 ~~~~~spdg~~la~~~~d~i~~w~~  286 (302)
                      ..+++.++|++.++. .++|.+|+.
T Consensus       242 dgi~~d~~G~lwv~~-~~gv~~~~~  265 (305)
T 3dr2_A          242 DGFCVDRGGWLWSSS-GTGVCVFDS  265 (305)
T ss_dssp             CSEEECTTSCEEECC-SSEEEEECT
T ss_pred             CeEEECCCCCEEEec-CCcEEEECC
Confidence            568899999965554 568999986

>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1

Probab=98.67  E-value=3.1e-05  Score=66.40  Aligned_cols=195  Identities=7%  Similarity=0.005  Sum_probs=111.2

Q ss_pred             EEEEeeCCCCCCEEEEEeCCCeEEEEEcCCCCceeEEEEecCCCCCeeEEEecCCCCCcEEEEEecCCcEEEEEecCCCC
Q 022111           59 WQVAWAHPKFGSILASCSYDGQVIIWKEGNQNDWTQAHTFNDHKSSVNSIAWAPHELGLSLACGSSDGNISVFTATADGG  138 (302)
Q Consensus        59 ~~v~~~~~~~~~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~h~~~i~~l~~~pd~~~~~l~sg~~d~~v~~~~~~~~~~  138 (302)
                      ....|+++ .+.++++...++.|..||..++.    ...+. ....+.+++|.|+  +.++++. . ..|.+||.... .
T Consensus        52 egp~~~~~-~~~l~~~d~~~~~i~~~d~~~~~----~~~~~-~~~~v~~i~~~~d--g~l~v~~-~-~gl~~~d~~~g-~  120 (326)
T 2ghs_A           52 EGPTFDPA-SGTAWWFNILERELHELHLASGR----KTVHA-LPFMGSALAKISD--SKQLIAS-D-DGLFLRDTATG-V  120 (326)
T ss_dssp             EEEEEETT-TTEEEEEEGGGTEEEEEETTTTE----EEEEE-CSSCEEEEEEEET--TEEEEEE-T-TEEEEEETTTC-C
T ss_pred             cCCeEeCC-CCEEEEEECCCCEEEEEECCCCc----EEEEE-CCCcceEEEEeCC--CeEEEEE-C-CCEEEEECCCC-c
Confidence            45678764 35677777788999999986542    22222 3467999999987  5555543 3 44888886533 2


Q ss_pred             eeee-eecccC-CCCeEEEEeCCCCCCCceeecccCCCceeEEEeeCC----CcEEEEEEecCccccccccccccCCCce
Q 022111          139 WDTT-RIDQAH-PVGVTSVSWAPAMAPGALVGLGLLDPVQKLASCGCD----NTVKVWKMYNGIWKMDCFPALQMHSDWV  212 (302)
Q Consensus       139 ~~~~-~~~~~h-~~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~D----~~v~iwd~~~~~~~~~~~~~~~~h~~~v  212 (302)
                      .... ...... ...+..+.++|++              .++++...+    +...||.+.++.  ..   .+..+....
T Consensus       121 ~~~~~~~~~~~~~~~~~~i~~d~~G--------------~l~v~~~~~~~~~~~~~l~~~~~g~--~~---~~~~~~~~~  181 (326)
T 2ghs_A          121 LTLHAELESDLPGNRSNDGRMHPSG--------------ALWIGTMGRKAETGAGSIYHVAKGK--VT---KLFADISIP  181 (326)
T ss_dssp             EEEEECSSTTCTTEEEEEEEECTTS--------------CEEEEEEETTCCTTCEEEEEEETTE--EE---EEEEEESSE
T ss_pred             EEEEeeCCCCCCCCCCCCEEECCCC--------------CEEEEeCCCcCCCCceEEEEEeCCc--EE---EeeCCCccc
Confidence            2211 111011 1246777777753              444443221    234455544332  11   111223346


Q ss_pred             eEEEeeCCCCCCccEEEEEecCCeEEEEEec-cCC-cceeeeee---ccCCCcEEEEEEccCCCEEEEecC-CceEEeee
Q 022111          213 RSVAWAPNLGLPKSTIASASQDGTVVIWTCA-KEG-EQWEGRVL---KDFKTPVWSVSWSLTGNLLAVADA-NNVTLWKE  286 (302)
Q Consensus       213 ~~v~~~p~~~~~~~~l~s~s~D~~i~iwd~~-~~~-~~~~~~~~---~~~~~~v~~~~~spdg~~la~~~~-d~i~~w~~  286 (302)
                      +.++|+|++.   ...++.+.++.|.+|+++ ..+ ........   ........++++.++|++.++... +.|.+|+.
T Consensus       182 ~~i~~s~dg~---~lyv~~~~~~~I~~~d~~~~~Gl~~~~~~~~~~~~~~~~~p~gi~~d~~G~lwva~~~~~~v~~~d~  258 (326)
T 2ghs_A          182 NSICFSPDGT---TGYFVDTKVNRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGHIWNARWGEGAVDRYDT  258 (326)
T ss_dssp             EEEEECTTSC---EEEEEETTTCEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSCEEEEEETTTEEEEECT
T ss_pred             CCeEEcCCCC---EEEEEECCCCEEEEEEcccccCCcccCceEEEECCCCCCCCCeeEECCCCCEEEEEeCCCEEEEECC
Confidence            7899999961   234555667899999985 111 11001111   112334678999999988776644 47999986

>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*

Probab=98.62  E-value=0.00017  Score=63.21  Aligned_cols=233  Identities=13%  Similarity=0.041  Sum_probs=128.1

Q ss_pred             EEccCCCEEEEeeC--CC---cEEEEeecCCCceEEEEecCcccCeEEEEeeCCCCCCEEEEEe----------CCCeEE
Q 022111           18 AMDFYGKRLATASS--DS---SIKIIGLSNSASQHLATLKGHRGPVWQVAWAHPKFGSILASCS----------YDGQVI   82 (302)
Q Consensus        18 ~~s~~~~~l~s~~~--d~---~v~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~s----------~D~~i~   82 (302)
                      ...++++++.++..  ..   +|.++|...  .+.+..+.....+  .+.++++  ++.|+.+.          .++.|.
T Consensus        27 ~~~~~~~~~yv~~~~~~~~~~~v~v~D~~t--~~~~~~i~~g~~p--~i~~spD--g~~lyv~n~~~~~~~rg~~~~~v~  100 (373)
T 2mad_H           27 APGADGRRSYINLPAHHSAIIQQWVLDAGS--GSILGHVNGGFLP--NPVAAHS--GSEFALASTSFSRIAKGKRTDYVE  100 (373)
T ss_pred             cCCCCCCEEEEeCCcccCCccEEEEEECCC--CeEEEEecCCCCC--CeEECCC--CCEEEEEeccccccccCCCCCeEE
Confidence            44578887776653  22   789998764  3455556543333  7899874  77776664          367899


Q ss_pred             EEEcCCCCceeEEEEecCC-------CCCeeEEEecCCCCCcEEEEEec--CCcEEEEEecCCCCeeeee-ecccCCCCe
Q 022111           83 IWKEGNQNDWTQAHTFNDH-------KSSVNSIAWAPHELGLSLACGSS--DGNISVFTATADGGWDTTR-IDQAHPVGV  152 (302)
Q Consensus        83 iwd~~~~~~~~~~~~~~~h-------~~~i~~l~~~pd~~~~~l~sg~~--d~~v~~~~~~~~~~~~~~~-~~~~h~~~v  152 (302)
                      ++|..+..   .+..+...       ......++|+||  |++|+.+..  ++.|.++| .+.. . ... +.  ...  
T Consensus       101 viD~~t~~---~~~~i~~~~~~~~~~g~~p~~~~~spD--G~~l~v~n~~~~~~v~viD-~t~~-~-~~~~i~--~~~--  168 (373)
T 2mad_H          101 VFDPVTFL---PIADIELPDAPRFDVGPYSWMNANTPN--NADLLFFQFAAGPAVGLVV-QGGS-S-DDQLLS--SPT--  168 (373)
T ss_pred             EEECCCCc---EEEEEECCCccccccCCCccceEECCC--CCEEEEEecCCCCeEEEEE-CCCC-E-EeEEcC--CCc--
Confidence            99987643   22322111       123458899998  667777663  57899999 6432 1 122 21  111  


Q ss_pred             EEEEeCCCCCCCceeecccCCCceeEEEeeCCCcEEEEEEecCccccccc---cccccCCCce-eEEEeeCCCCCCccEE
Q 022111          153 TSVSWAPAMAPGALVGLGLLDPVQKLASCGCDNTVKVWKMYNGIWKMDCF---PALQMHSDWV-RSVAWAPNLGLPKSTI  228 (302)
Q Consensus       153 ~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~D~~v~iwd~~~~~~~~~~~---~~~~~h~~~v-~~v~~~p~~~~~~~~l  228 (302)
                       ++.+.|.+             ...+++.+.|+.+.++|. ++... ...   ..+ ....++ ....|.+++    ..+
T Consensus       169 -~~~~~~~~-------------~~~~~~~~~dg~~~~vd~-~g~~~-~~~~~~~~~-~~~~p~~~~~~~~~~~----~~~  227 (373)
T 2mad_H          169 -CYHIHPGA-------------PSTFYLLCAQGGLAKTDH-AGGAA-GAGLVGAML-TAAQNLLTQPAQANKS----GRI  227 (373)
T ss_pred             -eEEEEeCC-------------CceEEEEcCCCCEEEEEC-CCcEE-EEEeccccc-cCCcceeecceeEecC----CEE
Confidence             12223322             245667778999999998 55311 000   001 111121 234556653    233


Q ss_pred             EEEecCCeEEEEEeccCCcceeeee--ec------c-CCCcEEEEEEccCCCEEEEecC-----------CceEEeeecC
Q 022111          229 ASASQDGTVVIWTCAKEGEQWEGRV--LK------D-FKTPVWSVSWSLTGNLLAVADA-----------NNVTLWKEAV  288 (302)
Q Consensus       229 ~s~s~D~~i~iwd~~~~~~~~~~~~--~~------~-~~~~v~~~~~spdg~~la~~~~-----------d~i~~w~~~~  288 (302)
                      +..+..+.+.+.|+..........+  ..      . .......++++||+++|.++..           +.|.+.|.+.
T Consensus       228 ~~~~~~~~v~vid~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~~~~s~d~~~lyV~~~~~~~~~~~~~~~~V~VID~~t  307 (373)
T 2mad_H          228 VWPVYSGKILQADISAAGATNKAPIDALSGGRKADTWRPGGWQQVAYLKSSDGIYLLTSEQSAWKLHAAAKEVTSVTGLV  307 (373)
T ss_pred             EEEcCCceEEEEeccCCcceEeeeeeecCCcccccceecCceEeEEECCCCCEEEEEeccCCcccccCCCCeEEEEECCC
Confidence            3334677888888754321100000  00      0 0122445889999987766532           2588888754


Q ss_pred             C
Q 022111          289 D  289 (302)
Q Consensus       289 ~  289 (302)
                      .
T Consensus       308 ~  308 (373)
T 2mad_H          308 G  308 (373)
T ss_pred             C
Confidence            3

>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}

Probab=98.61  E-value=1.2e-05  Score=71.66  Aligned_cols=239  Identities=12%  Similarity=0.070  Sum_probs=130.6

Q ss_pred             EEEEccCCCEEEEee----------CCCcEEEEeecCCCceEEEEec-C-c-----ccCeEEEEeeCCCCCCEEEEEeC-
Q 022111           16 DVAMDFYGKRLATAS----------SDSSIKIIGLSNSASQHLATLK-G-H-----RGPVWQVAWAHPKFGSILASCSY-   77 (302)
Q Consensus        16 ~~~~s~~~~~l~s~~----------~d~~v~lw~~~~~~~~~~~~~~-~-h-----~~~v~~v~~~~~~~~~~l~s~s~-   77 (302)
                      .+.++||+++|+.+.          .++.|.++|....  +.+..+. + -     ...-..+.|+++  |++|+.+.. 
T Consensus       122 gia~SpDgk~lyVan~~~~~~~~G~~~~~VsviD~~t~--~vv~~I~v~g~~r~~~g~~P~~~~~spD--Gk~lyV~n~~  197 (426)
T 3c75_H          122 HPVAAEDGSFFAQASTVFERIARGKRTDYVEVFDPVTF--LPIADIELPDAPRFLVGTYQWMNALTPD--NKNLLFYQFS  197 (426)
T ss_dssp             EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTC--CEEEEEEETTCCCCCBSCCGGGSEECTT--SSEEEEEECS
T ss_pred             ceEECCCCCEEEEEeccccccccCCCCCEEEEEECCCC--cEEEEEECCCccccccCCCcceEEEcCC--CCEEEEEecC
Confidence            689999999888775          3678999997653  3333332 1 0     112245788764  788777764 


Q ss_pred             -CCeEEEEEcCCCCceeEEEEecCCCCCeeEEEecCCCCCcEEEEEecCCcEEEEEecCCCCeeee---eecccCCCCe-
Q 022111           78 -DGQVIIWKEGNQNDWTQAHTFNDHKSSVNSIAWAPHELGLSLACGSSDGNISVFTATADGGWDTT---RIDQAHPVGV-  152 (302)
Q Consensus        78 -D~~i~iwd~~~~~~~~~~~~~~~h~~~i~~l~~~pd~~~~~l~sg~~d~~v~~~~~~~~~~~~~~---~~~~~h~~~v-  152 (302)
                       +++|.+.|..+..   .+.++..-.    +....|+. ...+++.+.|+.+.+.+. ..+.....   .+. ....++ 
T Consensus       198 ~~~~VsVID~~t~k---vv~~I~v~g----~~~~~p~g-~~~~v~~~~dG~~~~V~~-~~~~v~~~~~~~~~-v~~~p~~  267 (426)
T 3c75_H          198 PAPAVGVVDLEGKT---FDRMLDVPD----CYHIFPAS-PTVFYMNCRDGSLARVDF-ADGETKVTNTEVFH-TEDELLI  267 (426)
T ss_dssp             SSCEEEEEETTTTE---EEEEEECCS----EEEEEEEE-TTEEEEEETTSSEEEEEC-CTTCCEEEECCCCS-CTTSCBC
T ss_pred             CCCeEEEEECCCCe---EEEEEEcCC----ceeeccCC-CcEEEEEcCCCCEEEEEC-CCCcEEEEeeeeec-cCCCcee
Confidence             5789999987753   344443211    12333442 134556667777777666 22221100   000 000000 


Q ss_pred             EEEEeCCCCCCCceeecccCCCceeEEEeeCCCcEEEEEEecCccccccccccc----------cCCCceeEEEeeCCCC
Q 022111          153 TSVSWAPAMAPGALVGLGLLDPVQKLASCGCDNTVKVWKMYNGIWKMDCFPALQ----------MHSDWVRSVAWAPNLG  222 (302)
Q Consensus       153 ~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~D~~v~iwd~~~~~~~~~~~~~~~----------~h~~~v~~v~~~p~~~  222 (302)
                      ..+.+.++              +..++..+..+.|.+.|+......+  ...+.          .......-++++|++ 
T Consensus       268 ~~~~~~~d--------------g~~~~~~s~~g~V~ViD~~~~~~~v--~~~~~~~~~~~i~~g~~p~g~~~va~s~dg-  330 (426)
T 3c75_H          268 NHPAFSLR--------------SGRLVWPTYTGKIFQADLTAEGATF--RAPIEALTEAERADDWRPGGWQQTAYHRQS-  330 (426)
T ss_dssp             SCCEECTT--------------TCEEEEEBTTSEEEEEEECSSCEEE--CCCEESSCTTTGGGTEEECSSSCEEEEGGG-
T ss_pred             eEeeecCC--------------CCEEEEEeCCCcEEEEeccCCceEE--eeeeeeccccccccccccCCceeeEEcCCC-
Confidence            11222332              2444444567889999986532110  11000          011112236889986 


Q ss_pred             CCccEEEEEec---------CCeEEEEEeccCCcceeeeeeccCCCcEEEEEEccCCC-EEEEecC--CceEEeeecCCc
Q 022111          223 LPKSTIASASQ---------DGTVVIWTCAKEGEQWEGRVLKDFKTPVWSVSWSLTGN-LLAVADA--NNVTLWKEAVDG  290 (302)
Q Consensus       223 ~~~~~l~s~s~---------D~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~spdg~-~la~~~~--d~i~~w~~~~~~  290 (302)
                        +..+++...         ++.|.+.|..+.+..  ..+.  .....++++|+|||+ ++.++..  +.|.++|.....
T Consensus       331 --~rlyVa~~~~~~gthk~~s~~VsVID~~T~kvv--~~I~--vg~~P~gia~spDg~~~lyv~n~~s~~VsVID~~t~k  404 (426)
T 3c75_H          331 --DRIYLLVDQRDEWKHKAASRFVVVLNAETGERI--NKIE--LGHEIDSINVSQDAEPLLYALSAGTQTLHIYDAATGE  404 (426)
T ss_dssp             --TEEEEEEEECCTTCTTSCEEEEEEEETTTCCEE--EEEE--EEEEECEEEECCSSSCEEEEEETTTTEEEEEETTTCC
T ss_pred             --CEEEEEecccccccccCCCCEEEEEECCCCeEE--EEEE--CCCCcCeEEEccCCCEEEEEEcCCCCeEEEEECCCCC
Confidence              233444321         347999998764321  1221  123588999999999 8888763  479999987544


Q ss_pred             e
Q 022111          291 E  291 (302)
Q Consensus       291 ~  291 (302)
                      .
T Consensus       405 v  405 (426)
T 3c75_H          405 E  405 (426)
T ss_dssp             E
T ss_pred             E
Confidence            3

>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}

Probab=98.52  E-value=1.9e-07  Score=81.92  Aligned_cols=186  Identities=13%  Similarity=0.114  Sum_probs=90.2

Q ss_pred             CCEEEEEeCCCeEEEEEcCCCCceeEEEEecCCCCCeeEEEecCCCCCcEEEEEecCCcEEEEEecCCCCeeeeeecccC
Q 022111           69 GSILASCSYDGQVIIWKEGNQNDWTQAHTFNDHKSSVNSIAWAPHELGLSLACGSSDGNISVFTATADGGWDTTRIDQAH  148 (302)
Q Consensus        69 ~~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~h~~~i~~l~~~pd~~~~~l~sg~~d~~v~~~~~~~~~~~~~~~~~~~h  148 (302)
                      +.+|++++.|+.|..||..++.   .+.++..  +.+.+..+.++  +..+++++.|+.++.||..++.........  .
T Consensus         9 ~~~v~~gs~dg~v~a~d~~tG~---~~W~~~~--~~~~s~p~~~~--g~~~v~~s~dg~l~a~d~~tG~~~w~~~~~--~   79 (369)
T 2hz6_A            9 ETLLFVSTLDGSLHAVSKRTGS---IKWTLKE--DPVLQVPTHVE--EPAFLPDPNDGSLYTLGSKNNEGLTKLPFT--I   79 (369)
T ss_dssp             TTEEEEEETTSEEEEEETTTCC---EEEEEEC--CCSCCCC-------CCEEECTTTCCEEEC-----CCSEECSCC--H
T ss_pred             CCEEEEEcCCCEEEEEECCCCC---EEEEecC--CCceecceEcC--CCEEEEeCCCCEEEEEECCCCceeeeeecc--C
Confidence            5788999999999999987764   3344443  34444444444  456777789999999998643321111110  0


Q ss_pred             CCCeEEEEeCCCCCCCceeecccCCCceeEEEeeCCCcEEEEEEecCccccccccccccCCCceeEEEeeCCCCCCccEE
Q 022111          149 PVGVTSVSWAPAMAPGALVGLGLLDPVQKLASCGCDNTVKVWKMYNGIWKMDCFPALQMHSDWVRSVAWAPNLGLPKSTI  228 (302)
Q Consensus       149 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~D~~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~l  228 (302)
                      ...+   ..+|.           ...+..+++++.|+.++.||..++..    +-.+..+.    ...++|+    +..|
T Consensus        80 ~~~~---~~sp~-----------~~~~~~v~~g~~dg~v~a~D~~tG~~----~w~~~~~~----~~~~~p~----~~~v  133 (369)
T 2hz6_A           80 PELV---QASPC-----------RSSDGILYMGKKQDIWYVIDLLTGEK----QQTLSSAF----ADSLSPS----TSLL  133 (369)
T ss_dssp             HHHH---TTCSC-----------C-----CCCCEEEEEEEEECCC----------------------------------E
T ss_pred             cccc---ccCce-----------EecCCEEEEEeCCCEEEEEECCCCcE----EEEecCCC----ccccccc----CCEE
Confidence            0000   00110           00135677888899999999987742    12222222    2345665    3678


Q ss_pred             EEEecCCeEEEEEeccCCcceeeeeeccCCCcEEEEEEccCC---CEEEEecCC-ceEEeeecCCce-EEE
Q 022111          229 ASASQDGTVVIWTCAKEGEQWEGRVLKDFKTPVWSVSWSLTG---NLLAVADAN-NVTLWKEAVDGE-WQQ  294 (302)
Q Consensus       229 ~s~s~D~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~spdg---~~la~~~~d-~i~~w~~~~~~~-~~~  294 (302)
                      ++++.|+.|+.||.++....|.... ...    .+.++++++   ..+.+++.+ .+..||...... |..
T Consensus       134 ~~~~~dg~v~a~d~~tG~~~W~~~~-~~~----~~~~~~~~~~~~~~v~~~~~dg~v~a~d~~tG~~~W~~  199 (369)
T 2hz6_A          134 YLGRTEYTITMYDTKTRELRWNATY-FDY----AASLPEDDVDYKMSHFVSNGDGLVVTVDSESGDVLWIQ  199 (369)
T ss_dssp             EEEEEEEEEECCCSSSSSCCCEEEE-EEE----CCBCCCCCTTCCCCEEEEETSCEEEEECTTTCCEEEEE
T ss_pred             EEEecCCEEEEEECCCCCEEEeEec-ccc----cCccccCCccccceEEEECCCCEEEEEECCCCcEEEEe
Confidence            8999999999999876554454222 111    122233321   334445555 688888643332 543

>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}

Probab=98.50  E-value=1e-07  Score=83.65  Aligned_cols=205  Identities=16%  Similarity=0.128  Sum_probs=104.6

Q ss_pred             CCCEEEEeeCCCcEEEEeecCCCceEEEEecCcccCeEEEEeeCCCCCCEEEEEeCCCeEEEEEcCCCCceeEEEEecCC
Q 022111           22 YGKRLATASSDSSIKIIGLSNSASQHLATLKGHRGPVWQVAWAHPKFGSILASCSYDGQVIIWKEGNQNDWTQAHTFNDH  101 (302)
Q Consensus        22 ~~~~l~s~~~d~~v~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~h  101 (302)
                      ++..+++++.|+.|+.||..++  +.+..+..  +.+.+..+..  ++.++++++.|+.+..||.+++..   +..+..+
T Consensus         8 ~~~~v~~gs~dg~v~a~d~~tG--~~~W~~~~--~~~~s~p~~~--~g~~~v~~s~dg~l~a~d~~tG~~---~w~~~~~   78 (369)
T 2hz6_A            8 PETLLFVSTLDGSLHAVSKRTG--SIKWTLKE--DPVLQVPTHV--EEPAFLPDPNDGSLYTLGSKNNEG---LTKLPFT   78 (369)
T ss_dssp             CTTEEEEEETTSEEEEEETTTC--CEEEEEEC--CCSCCCC-------CCEEECTTTCCEEEC-----CC---SEECSCC
T ss_pred             eCCEEEEEcCCCEEEEEECCCC--CEEEEecC--CCceecceEc--CCCEEEEeCCCCEEEEEECCCCce---eeeeecc
Confidence            4678999999999999997654  34444443  3444333332  256788888999999999866532   2222222


Q ss_pred             CC-CeeEEEecCCC-CCcEEEEEecCCcEEEEEecCCCCeeeeeecccCCCCeEEEEeCCCCCCCceeecccCCCceeEE
Q 022111          102 KS-SVNSIAWAPHE-LGLSLACGSSDGNISVFTATADGGWDTTRIDQAHPVGVTSVSWAPAMAPGALVGLGLLDPVQKLA  179 (302)
Q Consensus       102 ~~-~i~~l~~~pd~-~~~~l~sg~~d~~v~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~  179 (302)
                      .. .+.   -+|-. .+..+++|+.++.+..||..++..  ...+. .+.    ....+|              .+..++
T Consensus        79 ~~~~~~---~sp~~~~~~~v~~g~~dg~v~a~D~~tG~~--~w~~~-~~~----~~~~~p--------------~~~~v~  134 (369)
T 2hz6_A           79 IPELVQ---ASPCRSSDGILYMGKKQDIWYVIDLLTGEK--QQTLS-SAF----ADSLSP--------------STSLLY  134 (369)
T ss_dssp             HHHHHT---TCSCC-----CCCCEEEEEEEEECCC-------------------------------------------EE
T ss_pred             Cccccc---cCceEecCCEEEEEeCCCEEEEEECCCCcE--EEEec-CCC----cccccc--------------cCCEEE
Confidence            11 110   11210 123577888899999998765432  12221 111    112233              146788


Q ss_pred             EeeCCCcEEEEEEecCc--cccccccccccCCCceeEEEeeCCCCCCccEEEEEecCCeEEEEEeccCCcceeeeeeccC
Q 022111          180 SCGCDNTVKVWKMYNGI--WKMDCFPALQMHSDWVRSVAWAPNLGLPKSTIASASQDGTVVIWTCAKEGEQWEGRVLKDF  257 (302)
Q Consensus       180 s~~~D~~v~iwd~~~~~--~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~~  257 (302)
                      +++.|+.|+.||..++.  |.+.    ...    .....+.++... ...+..++.|+.|+.||.++....|...    .
T Consensus       135 ~~~~dg~v~a~d~~tG~~~W~~~----~~~----~~~~~~~~~~~~-~~~v~~~~~dg~v~a~d~~tG~~~W~~~----~  201 (369)
T 2hz6_A          135 LGRTEYTITMYDTKTRELRWNAT----YFD----YAASLPEDDVDY-KMSHFVSNGDGLVVTVDSESGDVLWIQN----Y  201 (369)
T ss_dssp             EEEEEEEEECCCSSSSSCCCEEE----EEE----ECCBCCCCCTTC-CCCEEEEETSCEEEEECTTTCCEEEEEE----C
T ss_pred             EEecCCEEEEEECCCCCEEEeEe----ccc----ccCccccCCccc-cceEEEECCCCEEEEEECCCCcEEEEec----C
Confidence            88899999999998764  2211    111    112222222111 1457788999999999987655445422    3


Q ss_pred             CCcEE-EEEEccCCCE
Q 022111          258 KTPVW-SVSWSLTGNL  272 (302)
Q Consensus       258 ~~~v~-~~~~spdg~~  272 (302)
                      ..++. ...++++|..
T Consensus       202 ~~pv~~~~~~~~dg~~  217 (369)
T 2hz6_A          202 ASPVVAFYVWQREGLR  217 (369)
T ss_dssp             SSCEEEEEECTTSSCE
T ss_pred             CCceEEEEEecCCceE
Confidence            44554 3456677753

>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}

Probab=98.46  E-value=2.3e-05  Score=67.75  Aligned_cols=211  Identities=9%  Similarity=-0.008  Sum_probs=115.1

Q ss_pred             cCeEEEEeeCCCCCCEEEEEe--CCCeEEEEEcCCCCceeEEEEe-------cCCCCCeeEEEecCCCCCcEEEEEec--
Q 022111           56 GPVWQVAWAHPKFGSILASCS--YDGQVIIWKEGNQNDWTQAHTF-------NDHKSSVNSIAWAPHELGLSLACGSS--  124 (302)
Q Consensus        56 ~~v~~v~~~~~~~~~~l~s~s--~D~~i~iwd~~~~~~~~~~~~~-------~~h~~~i~~l~~~pd~~~~~l~sg~~--  124 (302)
                      .....|+++++  |+++++..  .++.++||.+.++    .+..+       ..+...+..+++.|+  +.++++-..  
T Consensus        17 ~~p~~va~~~~--g~~~v~~~~~~~~~~~l~~~~~g----~~~~~p~~~~~~~~~~~~p~gv~~d~~--g~L~v~D~g~~   88 (343)
T 2qe8_A           17 LAPGNITLTPD--GRLFLSLHQFYQPEMQVAELTQD----GLIPFPPQSGNAIITFDTVLGIKSDGN--GIVWMLDNGNQ   88 (343)
T ss_dssp             SCEEEEEECTT--SCEEEEECGGGCCSCSEEEEETT----EEEESCCCCSSCCCCCSCEEEEEECSS--SEEEEEECHHH
T ss_pred             CCcceEEECCC--CCEEEEeCCCCCCceEEEEECCC----CeecCCCcccCcccceeEeeEEEEcCC--CcEEEEcCCCC
Confidence            56788998753  78888864  2343666666422    12222       234567899999887  544444333  


Q ss_pred             ---CCcEEEEEecCCCCeeeeeecc---cCCCCeEEEEeCCCCCCCceeecccCCCceeEEEee---CCCcEEEEEEecC
Q 022111          125 ---DGNISVFTATADGGWDTTRIDQ---AHPVGVTSVSWAPAMAPGALVGLGLLDPVQKLASCG---CDNTVKVWKMYNG  195 (302)
Q Consensus       125 ---d~~v~~~~~~~~~~~~~~~~~~---~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~---~D~~v~iwd~~~~  195 (302)
                         +..|.+||..+........+..   .+......++++|..             +..+++..   .++.|.+||+.++
T Consensus        89 ~~~~~~i~~~d~~tg~~~~~~~~~~~~~~~~~~~~~v~vd~~~-------------g~~yvtd~~~~~~~~i~v~d~~~g  155 (343)
T 2qe8_A           89 SKSVPKLVAWDTLNNQLSRVIYLPPPITLSNSFVNDLAVDLIH-------------NFVYISDPAPDDKAALIRVDLQTG  155 (343)
T ss_dssp             HTSCCEEEEEETTTTEEEEEEECCTTTSCTTCCCCEEEEETTT-------------TEEEEEECCSGGGCEEEEEETTTC
T ss_pred             cCCCCeEEEEECCCCeEEEEEECChhhcccccccceEEEecCC-------------CEEEEEcCccCCCCeEEEEECCCC
Confidence               5788889876432121112110   111224556665432             35566665   6788999998654


Q ss_pred             cccccccc------------cccc--------------CCCceeEEEeeCCCCCCccEEEEEecCCeEEEEEeccC--C-
Q 022111          196 IWKMDCFP------------ALQM--------------HSDWVRSVAWAPNLGLPKSTIASASQDGTVVIWTCAKE--G-  246 (302)
Q Consensus       196 ~~~~~~~~------------~~~~--------------h~~~v~~v~~~p~~~~~~~~l~s~s~D~~i~iwd~~~~--~-  246 (302)
                      ... ..+.            ...+              ....++.|+|+|++    +.|..+..++. ++|.+...  . 
T Consensus       156 ~~~-r~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~~~gia~s~dg----~~ly~~~~~~~-~l~~~~~~~~~~  229 (343)
T 2qe8_A          156 LAA-RVLQGYPGIAPEDIDLVIDGVPVQIGQPDGTVIRPHLGVNGIVLDAEN----EWLYLSPMHST-SMYRIKSADLSN  229 (343)
T ss_dssp             CEE-EECTTCTTTSCCSCCCEETTEECBEECTTSCEECCCCCEEEEEECTTS----CEEEEEESSCS-EEEEEEHHHHTC
T ss_pred             CEE-EEecCCCcccccccceeECCEEEEeccCCCceeceecccceeEeccCC----CEEEEEeCCCC-eEEEEEHHHhcC
Confidence            211 0000            0000              01236889999985    56766666654 55554321  0 


Q ss_pred             -cceeeee-----eccCCCcEEEEEEccCCCEEEEecCC-ceEEeeecCCceEEE
Q 022111          247 -EQWEGRV-----LKDFKTPVWSVSWSLTGNLLAVADAN-NVTLWKEAVDGEWQQ  294 (302)
Q Consensus       247 -~~~~~~~-----~~~~~~~v~~~~~spdg~~la~~~~d-~i~~w~~~~~~~~~~  294 (302)
                       .....+.     ..+.......++++++|+++++...+ .|.+|+.. +|.+..
T Consensus       230 ~~~~~~~~~~~~~~~g~~g~pdgia~d~~G~l~va~~~~~~V~~~d~~-~G~~~~  283 (343)
T 2qe8_A          230 LQLTDAELGSKIERYSEKPICDGISIDKDHNIYVGDLAHSAIGVITSA-DRAYKL  283 (343)
T ss_dssp             TTCCHHHHHTTCEEEEECCSCSCEEECTTCCEEEEEGGGTEEEEEETT-TTEEEE
T ss_pred             CCCChhhhhcceEecccCCCCceEEECCCCCEEEEccCCCeEEEEECC-CCCEEE
Confidence             0000000     01112245579999999988777665 79999962 355443

>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...

Probab=98.41  E-value=9.8e-05  Score=64.69  Aligned_cols=239  Identities=10%  Similarity=0.044  Sum_probs=130.7

Q ss_pred             EEEccCCCEEEEeeC-----CCcEEEEeecCCCceEEEEecCcccCeEEEEeeCCCCCCEEEEEe----------CCCeE
Q 022111           17 VAMDFYGKRLATASS-----DSSIKIIGLSNSASQHLATLKGHRGPVWQVAWAHPKFGSILASCS----------YDGQV   81 (302)
Q Consensus        17 ~~~s~~~~~l~s~~~-----d~~v~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~s----------~D~~i   81 (302)
                      ....|+++.++....     ++.|.++|..+  .+.+..+..-..+  .+.++++  |++|+.++          .++.|
T Consensus        38 ~~~~pd~~~vyV~~~~~~~~~~~V~ViD~~t--~~v~~~I~vG~~P--~va~spD--G~~lyVan~~~~r~~~G~~~~~V  111 (386)
T 3sjl_D           38 EAPAPDARRVYVNDPAHFAAVTQQFVIDGEA--GRVIGMIDGGFLP--NPVVADD--GSFIAHASTVFSRIARGERTDYV  111 (386)
T ss_dssp             CCCCCCTTEEEEEECGGGCSSEEEEEEETTT--TEEEEEEEECSSC--EEEECTT--SSCEEEEEEEEEETTEEEEEEEE
T ss_pred             eccCCCCCEEEEEcCcccCCCCEEEEEECCC--CeEEEEEECCCCC--cEEECCC--CCEEEEEcccccccccCCCCCEE
Confidence            345789988887765     67899988754  4555555433334  4888874  77665554          36789


Q ss_pred             EEEEcCCCCceeEEEEecCC-------CCCeeEEEecCCCCCcEEEEEe--cCCcEEEEEecCCCCeeeeeecccCCCCe
Q 022111           82 IIWKEGNQNDWTQAHTFNDH-------KSSVNSIAWAPHELGLSLACGS--SDGNISVFTATADGGWDTTRIDQAHPVGV  152 (302)
Q Consensus        82 ~iwd~~~~~~~~~~~~~~~h-------~~~i~~l~~~pd~~~~~l~sg~--~d~~v~~~~~~~~~~~~~~~~~~~h~~~v  152 (302)
                      .+||..+..   .+.++...       ......++|+||  |+++..+.  .++.|.++|..+....  ..+....   .
T Consensus       112 sviD~~t~~---v~~~I~v~~g~r~~~g~~P~~~a~spD--Gk~lyVan~~~~~~VsVID~~t~~vv--~tI~v~g---~  181 (386)
T 3sjl_D          112 EVFDPVTLL---PTADIELPDAPRFLVGTYPWMTSLTPD--GKTLLFYQFSPAPAVGVVDLEGKAFK--RMLDVPD---C  181 (386)
T ss_dssp             EEECTTTCC---EEEEEEETTCCCCCBSCCGGGEEECTT--SSEEEEEECSSSCEEEEEETTTTEEE--EEEECCS---E
T ss_pred             EEEECCCCe---EEEEEECCCccccccCCCCceEEEcCC--CCEEEEEEcCCCCeEEEEECCCCcEE--EEEECCC---c
Confidence            999998764   33333211       124567899998  66666665  3689999998654211  2221110   1


Q ss_pred             EEEEeCCCCCCCceeecccCCCceeEEEeeCCCcEEEEEEec-CccccccccccccCCCcee-EEEee-CCCCCCccEEE
Q 022111          153 TSVSWAPAMAPGALVGLGLLDPVQKLASCGCDNTVKVWKMYN-GIWKMDCFPALQMHSDWVR-SVAWA-PNLGLPKSTIA  229 (302)
Q Consensus       153 ~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~D~~v~iwd~~~-~~~~~~~~~~~~~h~~~v~-~v~~~-p~~~~~~~~l~  229 (302)
                       ...+ |.+             ...+++.+.||.+-+.++.+ +.........+..-..++. ...|. +++    . ++
T Consensus       182 -~~~~-P~g-------------~~~~~~~~~DG~~~~v~~~~~g~v~~~~~~~~~~~~~~~~~~~~~~~~dG----~-~~  241 (386)
T 3sjl_D          182 -YHIF-PTA-------------PDTFFMHCRDGSLAKVAFGTEGTPEITHTEVFHPEDEFLINHPAYSQKAG----R-LV  241 (386)
T ss_dssp             -EEEE-EEE-------------TTEEEEEETTSCEEEEECCSSSCCEEEECCCCSCTTSCBCSCCEEETTTT----E-EE
T ss_pred             -ceee-cCC-------------CceeEEECCCCCEEEEECCCCCeEEEeecceeccccccccccceeEcCCC----c-EE
Confidence             1111 211             24566777788888888765 3210000001111112222 13554 443    3 44


Q ss_pred             EEecCCeEEEEEeccCCcceeeeee--------ccC-CCcEEEEEEccCCCEEEEecC-----------CceEEeeecCC
Q 022111          230 SASQDGTVVIWTCAKEGEQWEGRVL--------KDF-KTPVWSVSWSLTGNLLAVADA-----------NNVTLWKEAVD  289 (302)
Q Consensus       230 s~s~D~~i~iwd~~~~~~~~~~~~~--------~~~-~~~v~~~~~spdg~~la~~~~-----------d~i~~w~~~~~  289 (302)
                      -.+.++.+.+.|.............        .+. ......++++|+++++.++..           +.|.+.|....
T Consensus       242 ~vs~~g~V~v~d~~~~~~~v~~~~~~~~~~~~~~g~~p~g~q~~a~~~~~~~lyV~~~~~~~~~hk~~~~~V~viD~~t~  321 (386)
T 3sjl_D          242 WPTYTGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTG  321 (386)
T ss_dssp             EEBTTSEEEEEECTTSSCEECCCEESSCHHHHHTTEEECSSSCEEEETTTTEEEEEEEECCTTCTTSCEEEEEEEETTTC
T ss_pred             EEeCCCEEEEEECCCCcceeecceeccccccccccccCCCcceeeECCCCCeEEEEeccccccccCCCCCEEEEEECCCC
Confidence            4667899999998653211100110        000 112234778999888766532           24777776544


Q ss_pred             ce
Q 022111          290 GE  291 (302)
Q Consensus       290 ~~  291 (302)
                      ..
T Consensus       322 kv  323 (386)
T 3sjl_D          322 ER  323 (386)
T ss_dssp             CE
T ss_pred             eE
Confidence            33

>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1

Probab=98.41  E-value=3.3e-05  Score=67.47  Aligned_cols=90  Identities=13%  Similarity=-0.049  Sum_probs=59.1

Q ss_pred             cEEEEeecCCCceEEEEecCcccCeEEEEeeCCCCCCEEEEEe----------CCCeEEEEEcCCCCceeEEEEecCC--
Q 022111           34 SIKIIGLSNSASQHLATLKGHRGPVWQVAWAHPKFGSILASCS----------YDGQVIIWKEGNQNDWTQAHTFNDH--  101 (302)
Q Consensus        34 ~v~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~s----------~D~~i~iwd~~~~~~~~~~~~~~~h--  101 (302)
                      +|.++|..+  .+.+.++..-..+  .+.|+++  +++++.+.          .+++|.+||..+..   .+.++...  
T Consensus        47 ~vsvID~~t--~~v~~~i~vG~~P--~i~~spD--g~~lyVan~~~~r~~~G~~~~~VsviD~~T~~---vv~~I~v~~~  117 (368)
T 1mda_H           47 ENWVSCAGC--GVTLGHSLGAFLS--LAVAGHS--GSDFALASTSFARSAKGKRTDYVEVFDPVTFL---PIADIELPDA  117 (368)
T ss_dssp             EEEEEETTT--TEEEEEEEECTTC--EEEECTT--SSCEEEEEEEETTTTSSSEEEEEEEECTTTCC---EEEEEEETTS
T ss_pred             eEEEEECCC--CeEEEEEeCCCCC--ceEECCC--CCEEEEEcccccccccCCCCCEEEEEECCCCC---EEEEEECCCc
Confidence            788888754  4556666433345  6899875  67666664          37889999998764   34444322  


Q ss_pred             -----CCCeeEEEecCCCCCcEEEEEec--CCcEEE--EEec
Q 022111          102 -----KSSVNSIAWAPHELGLSLACGSS--DGNISV--FTAT  134 (302)
Q Consensus       102 -----~~~i~~l~~~pd~~~~~l~sg~~--d~~v~~--~~~~  134 (302)
                           ......++++||  |++++.+..  ++.+.+  +|..
T Consensus       118 ~~~~~g~~P~~ia~SpD--Gk~lyVan~~~~~~v~V~~iD~~  157 (368)
T 1mda_H          118 PRFSVGPRVHIIGNCAS--SACLLFFLFGSSAAAGLSVPGAS  157 (368)
T ss_dssp             CSCCBSCCTTSEEECTT--SSCEEEEECSSSCEEEEEETTTE
T ss_pred             cccccCCCcceEEEcCC--CCEEEEEccCCCCeEEEEEEchh
Confidence                 123568899998  666776653  466888  7764

>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}

Probab=98.22  E-value=0.00029  Score=62.61  Aligned_cols=237  Identities=12%  Similarity=0.048  Sum_probs=127.7

Q ss_pred             cCCCEEEEeeCC-----CcEEEEeecCCCceEEEEecCcccCeEEEEeeCCCCCCEEEEEe----------CCCeEEEEE
Q 022111           21 FYGKRLATASSD-----SSIKIIGLSNSASQHLATLKGHRGPVWQVAWAHPKFGSILASCS----------YDGQVIIWK   85 (302)
Q Consensus        21 ~~~~~l~s~~~d-----~~v~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~s----------~D~~i~iwd   85 (302)
                      ++++.++.+...     +.|.++|..+  .+.+.++.--..+  .+.++++  +++|+.+.          .++.|.++|
T Consensus        82 ~~~~~vyV~n~~~~~~~~~VsVID~~t--~~vv~~I~vG~~P--gia~SpD--gk~lyVan~~~~~~~~G~~~~~VsviD  155 (426)
T 3c75_H           82 PDARRVYIQDPAHFAAITQQFVIDGST--GRILGMTDGGFLP--HPVAAED--GSFFAQASTVFERIARGKRTDYVEVFD  155 (426)
T ss_dssp             CCTTEEEEEECTTTCSSEEEEEEETTT--TEEEEEEEECSSC--EEEECTT--SSCEEEEEEEEEETTEEEEEEEEEEEC
T ss_pred             CCCCEEEEECCCcCCCCCeEEEEECCC--CEEEEEEECCCCC--ceEECCC--CCEEEEEeccccccccCCCCCEEEEEE
Confidence            566666655442     6899999765  4555555432334  7899875  67665554          467899999


Q ss_pred             cCCCCceeEEEEecCC-------CCCeeEEEecCCCCCcEEEEEec--CCcEEEEEecCCCCeeeeeecccCCCCeEEEE
Q 022111           86 EGNQNDWTQAHTFNDH-------KSSVNSIAWAPHELGLSLACGSS--DGNISVFTATADGGWDTTRIDQAHPVGVTSVS  156 (302)
Q Consensus        86 ~~~~~~~~~~~~~~~h-------~~~i~~l~~~pd~~~~~l~sg~~--d~~v~~~~~~~~~~~~~~~~~~~h~~~v~~~~  156 (302)
                      ..+..   .+.++...       ......++|+||  |++++.+..  ++.|.+.|..+...  ...+....   .  ..
T Consensus       156 ~~t~~---vv~~I~v~g~~r~~~g~~P~~~~~spD--Gk~lyV~n~~~~~~VsVID~~t~kv--v~~I~v~g---~--~~  223 (426)
T 3c75_H          156 PVTFL---PIADIELPDAPRFLVGTYQWMNALTPD--NKNLLFYQFSPAPAVGVVDLEGKTF--DRMLDVPD---C--YH  223 (426)
T ss_dssp             TTTCC---EEEEEEETTCCCCCBSCCGGGSEECTT--SSEEEEEECSSSCEEEEEETTTTEE--EEEEECCS---E--EE
T ss_pred             CCCCc---EEEEEECCCccccccCCCcceEEEcCC--CCEEEEEecCCCCeEEEEECCCCeE--EEEEEcCC---c--ee
Confidence            87764   33333211       123467889998  667777653  57899998764321  12222111   1  11


Q ss_pred             eCCCCCCCceeecccCCCceeEEEeeCCCcEEEEEEecCccccccccccccCCCce-eEEEeeCCCCCCccEEEEEecCC
Q 022111          157 WAPAMAPGALVGLGLLDPVQKLASCGCDNTVKVWKMYNGIWKMDCFPALQMHSDWV-RSVAWAPNLGLPKSTIASASQDG  235 (302)
Q Consensus       157 ~~~~~~~~~~~~~~~~~~~~~l~s~~~D~~v~iwd~~~~~~~~~~~~~~~~h~~~v-~~v~~~p~~~~~~~~l~s~s~D~  235 (302)
                      ..|.+             ...+++.+.|+.+.+.++.++.........+.....++ ..+.|.|++    ..++..+..+
T Consensus       224 ~~p~g-------------~~~~v~~~~dG~~~~V~~~~~~v~~~~~~~~~v~~~p~~~~~~~~~dg----~~~~~~s~~g  286 (426)
T 3c75_H          224 IFPAS-------------PTVFYMNCRDGSLARVDFADGETKVTNTEVFHTEDELLINHPAFSLRS----GRLVWPTYTG  286 (426)
T ss_dssp             EEEEE-------------TTEEEEEETTSSEEEEECCTTCCEEEECCCCSCTTSCBCSCCEECTTT----CEEEEEBTTS
T ss_pred             eccCC-------------CcEEEEEcCCCCEEEEECCCCcEEEEeeeeeccCCCceeeEeeecCCC----CEEEEEeCCC
Confidence            11211             14556667788888777743311100001111111111 235667775    4555556788


Q ss_pred             eEEEEEeccCCcceee--eeec----cC---CCcEEEEEEccCCCEEEEec-----------CCceEEeeecCCceE
Q 022111          236 TVVIWTCAKEGEQWEG--RVLK----DF---KTPVWSVSWSLTGNLLAVAD-----------ANNVTLWKEAVDGEW  292 (302)
Q Consensus       236 ~i~iwd~~~~~~~~~~--~~~~----~~---~~~v~~~~~spdg~~la~~~-----------~d~i~~w~~~~~~~~  292 (302)
                      .+.+.|..........  .+..    ..   ......++|+|||+++.++.           ++.|.+.|......-
T Consensus       287 ~V~ViD~~~~~~~v~~~~~~~~~~~i~~g~~p~g~~~va~s~dg~rlyVa~~~~~~gthk~~s~~VsVID~~T~kvv  363 (426)
T 3c75_H          287 KIFQADLTAEGATFRAPIEALTEAERADDWRPGGWQQTAYHRQSDRIYLLVDQRDEWKHKAASRFVVVLNAETGERI  363 (426)
T ss_dssp             EEEEEEECSSCEEECCCEESSCTTTGGGTEEECSSSCEEEEGGGTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEE
T ss_pred             cEEEEeccCCceEEeeeeeeccccccccccccCCceeeEEcCCCCEEEEEecccccccccCCCCEEEEEECCCCeEE
Confidence            9999998543210000  0000    00   01122378999998776653           235888887655443

>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*

Probab=98.19  E-value=0.00044  Score=57.36  Aligned_cols=199  Identities=8%  Similarity=0.021  Sum_probs=116.2

Q ss_pred             eeEEEEccCCCEEEEeeC--CCcEEEEeecCCCceEEEEe--cCcccCeEEEEeeCCCCCCEEEEEeCCCeEEEEEcCCC
Q 022111           14 VHDVAMDFYGKRLATASS--DSSIKIIGLSNSASQHLATL--KGHRGPVWQVAWAHPKFGSILASCSYDGQVIIWKEGNQ   89 (302)
Q Consensus        14 v~~~~~s~~~~~l~s~~~--d~~v~lw~~~~~~~~~~~~~--~~h~~~v~~v~~~~~~~~~~l~s~s~D~~i~iwd~~~~   89 (302)
                      ...+.|++++...++.+.  ++.|+++|..+..  .+..+  ..+. ..-.+.+..   +.+.++.-.++.+.++|..+.
T Consensus        23 ~~Gl~~~~dg~Lyvstg~~~~s~v~~iD~~tg~--v~~~i~l~~~~-fgeGi~~~g---~~lyv~t~~~~~v~viD~~t~   96 (266)
T 2iwa_A           23 TQGLVYAENDTLFESTGLYGRSSVRQVALQTGK--VENIHKMDDSY-FGEGLTLLN---EKLYQVVWLKNIGFIYDRRTL   96 (266)
T ss_dssp             EEEEEECSTTEEEEEECSTTTCEEEEEETTTCC--EEEEEECCTTC-CEEEEEEET---TEEEEEETTCSEEEEEETTTT
T ss_pred             cccEEEeCCCeEEEECCCCCCCEEEEEECCCCC--EEEEEecCCCc-ceEEEEEeC---CEEEEEEecCCEEEEEECCCC
Confidence            568999998765555554  5789999986543  34443  2321 223566542   355555567899999998765


Q ss_pred             CceeEEEEecCCCCCeeEEEecCCCCCcEEEEEecCCcEEEEEecCCCCeeeeeecccCCC---CeEEEEeCCCCCCCce
Q 022111           90 NDWTQAHTFNDHKSSVNSIAWAPHELGLSLACGSSDGNISVFTATADGGWDTTRIDQAHPV---GVTSVSWAPAMAPGAL  166 (302)
Q Consensus        90 ~~~~~~~~~~~h~~~i~~l~~~pd~~~~~l~sg~~d~~v~~~~~~~~~~~~~~~~~~~h~~---~v~~~~~~~~~~~~~~  166 (302)
                         +.+.++......  ...+++|  +..+..+..++.+.+.|..+.......... ....   ..+.+.|. +      
T Consensus        97 ---~v~~~i~~g~~~--g~glt~D--g~~l~vs~gs~~l~viD~~t~~v~~~I~Vg-~~~~p~~~~nele~~-d------  161 (266)
T 2iwa_A           97 ---SNIKNFTHQMKD--GWGLATD--GKILYGSDGTSILYEIDPHTFKLIKKHNVK-YNGHRVIRLNELEYI-N------  161 (266)
T ss_dssp             ---EEEEEEECCSSS--CCEEEEC--SSSEEEECSSSEEEEECTTTCCEEEEEECE-ETTEECCCEEEEEEE-T------
T ss_pred             ---cEEEEEECCCCC--eEEEEEC--CCEEEEECCCCeEEEEECCCCcEEEEEEEC-CCCcccccceeEEEE-C------
Confidence               344555322111  2335566  444555556888988886543222111111 1111   23445554 2      


Q ss_pred             eecccCCCceeEEEeeCCCcEEEEEEecCcccccc-cccc------ccC--CCceeEEEeeCCCCCCccEEEEEecCCeE
Q 022111          167 VGLGLLDPVQKLASCGCDNTVKVWKMYNGIWKMDC-FPAL------QMH--SDWVRSVAWAPNLGLPKSTIASASQDGTV  237 (302)
Q Consensus       167 ~~~~~~~~~~~l~s~~~D~~v~iwd~~~~~~~~~~-~~~~------~~h--~~~v~~v~~~p~~~~~~~~l~s~s~D~~i  237 (302)
                              +..++....++.|.+.|..++.-.-.. ...+      ..+  ....+.|+|+|++   ...++++.....|
T Consensus       162 --------g~lyvn~~~~~~V~vID~~tg~V~~~I~~~g~~~~~~~~~~~~~~v~nGIa~~~~~---~~lfVTgk~~~~v  230 (266)
T 2iwa_A          162 --------GEVWANIWQTDCIARISAKDGTLLGWILLPNLRKKLIDEGFRDIDVLNGIAWDQEN---KRIFVTGKLWPKL  230 (266)
T ss_dssp             --------TEEEEEETTSSEEEEEETTTCCEEEEEECHHHHHHHHHTTCTTCCCEEEEEEETTT---TEEEEEETTCSEE
T ss_pred             --------CEEEEecCCCCeEEEEECCCCcEEEEEECCCcccccccccccccCceEEEEEcCCC---CEEEEECCCCCeE
Confidence                    456677767889999998776321110 0000      011  1356899999996   4688888888888


Q ss_pred             EEEEecc
Q 022111          238 VIWTCAK  244 (302)
Q Consensus       238 ~iwd~~~  244 (302)
                      ...++..
T Consensus       231 ~~i~l~~  237 (266)
T 2iwa_A          231 FEIKLHL  237 (266)
T ss_dssp             EEEEEEE
T ss_pred             EEEEEec
Confidence            8888764

>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}

Probab=98.12  E-value=0.00025  Score=63.02  Aligned_cols=195  Identities=12%  Similarity=0.152  Sum_probs=106.3

Q ss_pred             CEEEEEeCCCeEEEEEcCCC-CceeEEEEec------C-CCCCeeEEEecCCCCCcEEEEEecC------CcEEEEEecC
Q 022111           70 SILASCSYDGQVIIWKEGNQ-NDWTQAHTFN------D-HKSSVNSIAWAPHELGLSLACGSSD------GNISVFTATA  135 (302)
Q Consensus        70 ~~l~s~s~D~~i~iwd~~~~-~~~~~~~~~~------~-h~~~i~~l~~~pd~~~~~l~sg~~d------~~v~~~~~~~  135 (302)
                      .+++++..+.+|.+.|..+. ...+..+++.      . .....-.+...|+  | +++++..+      +.+.++|..+
T Consensus        97 ~l~v~~l~s~~I~viD~~t~p~~p~~~k~ie~~~~~~~~g~s~Ph~~~~~pd--G-i~Vs~~g~~~g~~~g~v~vlD~~T  173 (462)
T 2ece_A           97 FLIVPGLRSSRIYIIDTKPNPREPKIIKVIEPEEVKKVSGYSRLHTVHCGPD--A-IYISALGNEEGEGPGGILMLDHYS  173 (462)
T ss_dssp             EEEEEBTTTCCEEEEECCSCTTSCEEEEEECHHHHHHHHCEEEEEEEEECSS--C-EEEEEEEETTSCSCCEEEEECTTT
T ss_pred             EEEEccCCCCeEEEEECCCCCCCceeeeeechhhcccccCCCcccceeECCC--e-EEEEcCCCcCCCCCCeEEEEECCC
Confidence            35677788999999998533 2223444442      0 1112345566787  5 44455444      6788887654


Q ss_pred             CCCeeeeeecccCCCC-eEEEEeCCCCCCCceeecccCCCceeEEEee-------------------CCCcEEEEEEecC
Q 022111          136 DGGWDTTRIDQAHPVG-VTSVSWAPAMAPGALVGLGLLDPVQKLASCG-------------------CDNTVKVWKMYNG  195 (302)
Q Consensus       136 ~~~~~~~~~~~~h~~~-v~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~-------------------~D~~v~iwd~~~~  195 (302)
                      .......... ..... -..+-|+|+.              +.+++..                   .+..|.+||+.++
T Consensus       174 ~~v~~~~~~~-~~~~~~~Yd~~~~p~~--------------~~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~~~  238 (462)
T 2ece_A          174 FEPLGKWEID-RGDQYLAYDFWWNLPN--------------EVLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLRKR  238 (462)
T ss_dssp             CCEEEECCSB-CTTCCCCCCEEEETTT--------------TEEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEETTTT
T ss_pred             CeEEEEEccC-CCCccccceEEECCCC--------------CEEEEccCcCccccccccchhhhhhccCCEEEEEECCCC
Confidence            3211111111 11111 1234556543              4555553                   4788999999865


Q ss_pred             cccccccccccc--CCCceeEEEe--eCCCCCCccEEEEEe-----cCCeEEEEEeccCCcceeeeee------------
Q 022111          196 IWKMDCFPALQM--HSDWVRSVAW--APNLGLPKSTIASAS-----QDGTVVIWTCAKEGEQWEGRVL------------  254 (302)
Q Consensus       196 ~~~~~~~~~~~~--h~~~v~~v~~--~p~~~~~~~~l~s~s-----~D~~i~iwd~~~~~~~~~~~~~------------  254 (302)
                      .    ...++..  .......|.|  +|++.   ..+++..     .+++|.+|..+.  ..|.....            
T Consensus       239 k----~~~tI~vg~~g~~P~~i~f~~~Pdg~---~aYV~~e~~~~~Lss~V~v~~~d~--g~~~~~~vIdi~~~~v~~~l  309 (462)
T 2ece_A          239 K----RIHSLTLGEENRMALELRPLHDPTKL---MGFINMVVSLKDLSSSIWLWFYED--GKWNAEKVIEIPAEPLEGNL  309 (462)
T ss_dssp             E----EEEEEESCTTEEEEEEEEECSSTTCC---EEEEEEEEETTTCCEEEEEEEEET--TEEEEEEEEEECCEECCSSC
T ss_pred             c----EeeEEecCCCCCccceeEeeECCCCC---EEEEEEeeeccCCCceEEEEEecC--CceeEEEEEeCCCccccccc
Confidence            2    2222222  1123445655  89862   3444555     677887776643  11211110            


Q ss_pred             ----ccC---CCcEEEEEEccCCCEEEEecC--CceEEeeecCCce
Q 022111          255 ----KDF---KTPVWSVSWSLTGNLLAVADA--NNVTLWKEAVDGE  291 (302)
Q Consensus       255 ----~~~---~~~v~~~~~spdg~~la~~~~--d~i~~w~~~~~~~  291 (302)
                          .++   ......+.+||||++|-++..  +.|.+++..+.+.
T Consensus       310 p~~~~~f~~~~~~pa~I~lS~DGrfLYVSnrg~d~VavfdV~d~~~  355 (462)
T 2ece_A          310 PEILKPFKAVPPLVTDIDISLDDKFLYLSLWGIGEVRQYDISNPFK  355 (462)
T ss_dssp             CGGGGGGTEECCCCCCEEECTTSCEEEEEETTTTEEEEEECSSTTS
T ss_pred             cccccccccCCCceeEEEECCCCCEEEEEeCCCCEEEEEEecCCCC
Confidence                001   123678999999999988855  4799999865544

>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1

Probab=98.08  E-value=0.00073  Score=63.93  Aligned_cols=57  Identities=14%  Similarity=0.317  Sum_probs=38.8

Q ss_pred             CeEEEEEeccCCcceeeeeeccCCCcEEEEEEccCCCEEEEecCC-ceEEeeecCCceEEEe
Q 022111          235 GTVVIWTCAKEGEQWEGRVLKDFKTPVWSVSWSLTGNLLAVADAN-NVTLWKEAVDGEWQQV  295 (302)
Q Consensus       235 ~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~la~~~~d-~i~~w~~~~~~~~~~~  295 (302)
                      +.|..||+.+.+..|...    +..++++..++++|.++.+++.+ .++.||........+.
T Consensus       457 g~l~A~D~~tG~~~W~~~----~~~~~~~g~~~~~g~~v~~g~~dg~l~a~D~~tG~~lw~~  514 (677)
T 1kb0_A          457 GRLLAWDPVAQKAAWSVE----HVSPWNGGTLTTAGNVVFQGTADGRLVAYHAATGEKLWEA  514 (677)
T ss_dssp             EEEEEEETTTTEEEEEEE----ESSSCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEE
T ss_pred             cEEEEEeCCCCcEEeecC----CCCCCcCcceEeCCCEEEEECCCCcEEEEECCCCceeeee
Confidence            789999987765445422    23445666677788888888777 7999998665554443

>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1

Probab=98.05  E-value=0.0003  Score=61.39  Aligned_cols=69  Identities=10%  Similarity=0.030  Sum_probs=47.4

Q ss_pred             EEEEccCCCEEEEee----------CCCcEEEEeecCCCceEEEEecCc-------ccCeEEEEeeCCCCCCEEEEEeC-
Q 022111           16 DVAMDFYGKRLATAS----------SDSSIKIIGLSNSASQHLATLKGH-------RGPVWQVAWAHPKFGSILASCSY-   77 (302)
Q Consensus        16 ~~~~s~~~~~l~s~~----------~d~~v~lw~~~~~~~~~~~~~~~h-------~~~v~~v~~~~~~~~~~l~s~s~-   77 (302)
                      .+.++||+++++.+.          .+++|.+||..+.  +.+..+..+       ...-..+.|+++  |++|+.+.. 
T Consensus        69 ~i~~spDg~~lyVan~~~~r~~~G~~~~~VsviD~~T~--~vv~~I~v~~~~~~~~g~~P~~ia~SpD--Gk~lyVan~~  144 (368)
T 1mda_H           69 LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTF--LPIADIELPDAPRFSVGPRVHIIGNCAS--SACLLFFLFG  144 (368)
T ss_dssp             EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTC--CEEEEEEETTSCSCCBSCCTTSEEECTT--SSCEEEEECS
T ss_pred             ceEECCCCCEEEEEcccccccccCCCCCEEEEEECCCC--CEEEEEECCCccccccCCCcceEEEcCC--CCEEEEEccC
Confidence            689999999888876          3688999998653  445554322       012346788864  788877764 


Q ss_pred             -CCeEEE--EEcCC
Q 022111           78 -DGQVII--WKEGN   88 (302)
Q Consensus        78 -D~~i~i--wd~~~   88 (302)
                       +..+.+  +|..+
T Consensus       145 ~~~~v~V~~iD~~t  158 (368)
T 1mda_H          145 SSAAAGLSVPGASD  158 (368)
T ss_dssp             SSCEEEEEETTTEE
T ss_pred             CCCeEEEEEEchhh
Confidence             467888  88754

>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A

Probab=98.01  E-value=0.0021  Score=60.52  Aligned_cols=254  Identities=8%  Similarity=0.003  Sum_probs=130.1

Q ss_pred             EEEEcc-CCCEEEEeeCCC-----------cEEEEeecCCCceEEEEecC-cccCeEEEEeeCCCCCCEEEEEeC-CCeE
Q 022111           16 DVAMDF-YGKRLATASSDS-----------SIKIIGLSNSASQHLATLKG-HRGPVWQVAWAHPKFGSILASCSY-DGQV   81 (302)
Q Consensus        16 ~~~~s~-~~~~l~s~~~d~-----------~v~lw~~~~~~~~~~~~~~~-h~~~v~~v~~~~~~~~~~l~s~s~-D~~i   81 (302)
                      .+++.+ +++.++.||.+.           .+.+||........+..+.. +.....++++..  ++++++.|+. +..+
T Consensus       190 ~~av~~~~g~l~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~~--~g~lyv~GG~~~~~v  267 (656)
T 1k3i_A          190 AAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKHDMFCPGISMDG--NGQIVVTGGNDAKKT  267 (656)
T ss_dssp             EEEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECSCCCSSCEEEECT--TSCEEEECSSSTTCE
T ss_pred             eEEEEecCCEEEEEecccccccccCCCCeEEEEEEeCCCCcEEeCcccCCCCCCccccccCCC--CCCEEEeCCCCCCce
Confidence            345566 888888888653           57888886655444444422 333333455544  3788888884 5689


Q ss_pred             EEEEcCCCCceeEEEEecCCCCCe-eEEEecCCCCCcEEEEEe-cC-----CcEEEEEecCCCCeeeeeecccCCCCeEE
Q 022111           82 IIWKEGNQNDWTQAHTFNDHKSSV-NSIAWAPHELGLSLACGS-SD-----GNISVFTATADGGWDTTRIDQAHPVGVTS  154 (302)
Q Consensus        82 ~iwd~~~~~~~~~~~~~~~h~~~i-~~l~~~pd~~~~~l~sg~-~d-----~~v~~~~~~~~~~~~~~~~~~~h~~~v~~  154 (302)
                      .+||..+. .|..+..+.  ..+- -+++..++  +++++.|+ .+     ..+.+||..+. .|.....  ....+...
T Consensus       268 ~~yd~~t~-~W~~~~~~~--~~R~~~s~~~~~d--g~iyv~GG~~~~~~~~~~~e~yd~~t~-~W~~~~~--~~~~p~~~  339 (656)
T 1k3i_A          268 SLYDSSSD-SWIPGPDMQ--VARGYQSSATMSD--GRVFTIGGSWSGGVFEKNGEVYSPSSK-TWTSLPN--AKVNPMLT  339 (656)
T ss_dssp             EEEEGGGT-EEEECCCCS--SCCSSCEEEECTT--SCEEEECCCCCSSSCCCCEEEEETTTT-EEEEETT--SCSGGGCC
T ss_pred             EEecCcCC-ceeECCCCC--ccccccceEEecC--CeEEEEeCcccCCcccccceEeCCCCC-cceeCCC--cccccccc
Confidence            99998764 455443222  2222 23444455  66788887 34     56888887532 3432210  00000000


Q ss_pred             EEeCCCCCCCceeecccCCCceeEEEeeCC---------CcEEEEEEecCcccccccccccc------CCCceeEEEeeC
Q 022111          155 VSWAPAMAPGALVGLGLLDPVQKLASCGCD---------NTVKVWKMYNGIWKMDCFPALQM------HSDWVRSVAWAP  219 (302)
Q Consensus       155 ~~~~~~~~~~~~~~~~~~~~~~~l~s~~~D---------~~v~iwd~~~~~~~~~~~~~~~~------h~~~v~~v~~~p  219 (302)
                           ... ..    ....++..++.++.+         ..+..||..+..|.... .....      ....-.++.|.+
T Consensus       340 -----~~~-~~----~~~~~~~iyv~Gg~~g~~~~~~~~~~v~~yd~~~~~w~~~~-~~~~~~~~~~~~~~~~~av~~~~  408 (656)
T 1k3i_A          340 -----ADK-QG----LYRSDNHAWLFGWKKGSVFQAGPSTAMNWYYTSGSGDVKSA-GKRQSNRGVAPDAMCGNAVMYDA  408 (656)
T ss_dssp             -----CCT-TG----GGTTTCSCCEEECGGGCEEECCSSSEEEEEECSTTCEEEEE-EECEETTEECCCCBTCEEEEEET
T ss_pred             -----ccc-cc----eeecCCceEEEECCCCcEEEecCccceeeeecCCcceeecC-CccccccccCCCCCCCceEeccC
Confidence                 000 00    000112333444333         45678887765432111 00000      011124455543


Q ss_pred             CCCCCccEEEEEecCC-----------eEEEEEeccCCcceeeeeeccC-CCcE-EEEEEccCCCEEEEecC--------
Q 022111          220 NLGLPKSTIASASQDG-----------TVVIWTCAKEGEQWEGRVLKDF-KTPV-WSVSWSLTGNLLAVADA--------  278 (302)
Q Consensus       220 ~~~~~~~~l~s~s~D~-----------~i~iwd~~~~~~~~~~~~~~~~-~~~v-~~~~~spdg~~la~~~~--------  278 (302)
                      ..   +..++.|+.++           .|.+||....  .|........ .... .++...|+|+++++|+.        
T Consensus       409 ~~---~~i~v~GG~~~~~~~~~~~~~~~v~~yd~~~~--~W~~~~~~~mp~~R~~~~~~~l~~g~i~v~GG~~~~~~~~~  483 (656)
T 1k3i_A          409 VK---GKILTFGGSPDYQDSDATTNAHIITLGEPGTS--PNTVFASNGLYFARTFHTSVVLPDGSTFITGGQRRGIPFED  483 (656)
T ss_dssp             TT---TEEEEECCBSSSSSSBCCCCEEEEECCSTTSC--CEEEECTTCCSSCCBSCEEEECTTSCEEEECCBSBCCTTCC
T ss_pred             CC---CeEEEEeCCCCCCCCCcCCcceEEEcCCCCCC--CeeEEccCCCCCCcccCCeEECCCCCEEEECCcccCcCcCC
Confidence            21   47788887543           5777776543  3432110111 1112 24456689999999873        


Q ss_pred             ----CceEEeeecCCceEEEee
Q 022111          279 ----NNVTLWKEAVDGEWQQVS  296 (302)
Q Consensus       279 ----d~i~~w~~~~~~~~~~~~  296 (302)
                          +.+.+||.. .++|..+.
T Consensus       484 ~~~~~~v~~ydp~-t~~W~~~~  504 (656)
T 1k3i_A          484 STPVFTPEIYVPE-QDTFYKQN  504 (656)
T ss_dssp             CSBCCCCEEEEGG-GTEEEECC
T ss_pred             CCcccceEEEcCC-CCceeecC
Confidence                247899975 46898765

>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A

Probab=97.94  E-value=0.0017  Score=59.72  Aligned_cols=248  Identities=10%  Similarity=0.047  Sum_probs=126.3

Q ss_pred             CCCEEEEeeCC-CcEEEEeecCCCceEEEEecCcccCeEEEEeeC-CCCCCEEEEEe------------------CCCeE
Q 022111           22 YGKRLATASSD-SSIKIIGLSNSASQHLATLKGHRGPVWQVAWAH-PKFGSILASCS------------------YDGQV   81 (302)
Q Consensus        22 ~~~~l~s~~~d-~~v~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~-~~~~~~l~s~s------------------~D~~i   81 (302)
                      ||++|..+..+ ..|.+.|+.......+..+.. ......+++.. | ++++++.++                  .++.+
T Consensus       100 DG~~lfVnd~~~~rVavIdl~t~~~~~ii~ip~-g~~phg~~~~~~p-~~~~v~~~~~~~~p~~~dg~~l~~~~~~~~~v  177 (595)
T 1fwx_A          100 DGRFLFMNDKANTRVARVRCDVMKCDAILEIPN-AKGIHGLRPQKWP-RSNYVFCNGEDETPLVNDGTNMEDVANYVNVF  177 (595)
T ss_dssp             EEEEEEEEETTTTEEEEEETTTTEEEEEEECSS-CCSEEEEEECCSS-BCSEEEEEECSCEESSCSSSSTTCGGGEEEEE
T ss_pred             CCCEEEEEcCCCCEEEEEECCCceEeeEEeCCC-CCCCcceeeeecC-CCcEEEEecccccccCCCCcccccccccCceE
Confidence            78888776654 568888886533222224432 22466777743 3 367776663                  34578


Q ss_pred             EEEEcCCCCceeEEEEecCCCCCeeEEEecCCCCCcEEEEEecCC---------------cEEEEEecC------CCCee
Q 022111           82 IIWKEGNQNDWTQAHTFNDHKSSVNSIAWAPHELGLSLACGSSDG---------------NISVFTATA------DGGWD  140 (302)
Q Consensus        82 ~iwd~~~~~~~~~~~~~~~h~~~i~~l~~~pd~~~~~l~sg~~d~---------------~v~~~~~~~------~~~~~  140 (302)
                      .+.|..+..   ...++.--. ...-++++|+  |.++.+.+.+.               .|.+.+...      .+...
T Consensus       178 tvID~~t~~---v~~qI~Vgg-~pd~~~~spd--Gk~~~vt~~~se~~~~i~~~~~~~~d~v~V~~~~~~~~~v~~Gk~~  251 (595)
T 1fwx_A          178 TAVDADKWE---VAWQVLVSG-NLDNCDADYE--GKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDYQ  251 (595)
T ss_dssp             EEEETTTTE---EEEEEEESS-CCCCEEECSS--SSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTCSE
T ss_pred             EEEECCCCe---EEEEEEeCC-CccceEECCC--CCEEEEEecCcccCcchhhccccccceEEEeeccceeEeccCCCee
Confidence            888876642   333332111 3466778887  66666666443               244443211      00000


Q ss_pred             ----eeeecccC--CCC-eEEEEeCCCCCCCceeecccCCCcee-EEEeeCCCcEEEEEEecCccc----c----ccccc
Q 022111          141 ----TTRIDQAH--PVG-VTSVSWAPAMAPGALVGLGLLDPVQK-LASCGCDNTVKVWKMYNGIWK----M----DCFPA  204 (302)
Q Consensus       141 ----~~~~~~~h--~~~-v~~~~~~~~~~~~~~~~~~~~~~~~~-l~s~~~D~~v~iwd~~~~~~~----~----~~~~~  204 (302)
                          ...+....  ... +..+...     ..-+++..+++|++ ++++..+.+|.++|+.+....    +    .....
T Consensus       252 ~i~~V~VID~~~~~~~~~~~~Ipvg-----~~PhGv~~sPDGk~v~V~~~~s~~VsVid~~~~~~~~~~~l~~~~~v~~~  326 (595)
T 1fwx_A          252 ELNGVKVVDGRKEASSLFTRYIPIA-----NNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAE  326 (595)
T ss_dssp             EETTEEEEECSGGGCCSSEEEEEEE-----SSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCCCGGGGEEEC
T ss_pred             EECcEEEEeCcccCCceeEEEEecC-----CCceEEEEcCCCCEEEEeCCCCCeEEEEECcccccccccccCcccceEEE
Confidence                00000000  000 0111000     01112233444554 555667899999998753100    0    01111


Q ss_pred             cccCCCceeEEEeeCCCCCCccEEEEEecCCeEEEEEeccCC--------cceeeeeeccCC-CcE---EEEEEccCCCE
Q 022111          205 LQMHSDWVRSVAWAPNLGLPKSTIASASQDGTVVIWTCAKEG--------EQWEGRVLKDFK-TPV---WSVSWSLTGNL  272 (302)
Q Consensus       205 ~~~h~~~v~~v~~~p~~~~~~~~l~s~s~D~~i~iwd~~~~~--------~~~~~~~~~~~~-~~v---~~~~~spdg~~  272 (302)
                      .. -...-..++|+|++    ...++.-.|+.|.+||+....        .+....+-..+. +..   .++.++|||++
T Consensus       327 v~-vG~gP~h~aF~~dG----~aY~t~~ldsqV~kwdi~~a~~~~~g~~~~~vi~kidV~yqpGh~~~~~g~t~~~DGk~  401 (595)
T 1fwx_A          327 PE-LGLGPLHTAFDGRG----NAYTSLFLDSQVVKWNIEDAIRAYAGEKVDPIKDKLDVHYQPGHLKTVMGETLDATNDW  401 (595)
T ss_dssp             CB-CCSCEEEEEECTTS----EEEEEETTTTEEEEEEHHHHHHHHHTCSCCCEEEEEECSSCEEEEEETTTTSTTCCSSE
T ss_pred             cC-CCCCcceEEECCCC----eEEEEEecCCcEEEEEhhHhhhhhcccccceeEEEeecccccccceeccceEeCCCCCE
Confidence            11 12346789999985    556677789999999987510        111111111111 101   12356899999


Q ss_pred             EEEecC---Cce-----------EEeeec
Q 022111          273 LAVADA---NNV-----------TLWKEA  287 (302)
Q Consensus       273 la~~~~---d~i-----------~~w~~~  287 (302)
                      |.++..   |.+           .|+|+.
T Consensus       402 l~~~Nk~skdr~~~~gp~~~~~~ql~dis  430 (595)
T 1fwx_A          402 LVCLSKFSKDRFLNVGPLKPENDQLIDIS  430 (595)
T ss_dssp             EEEEESCCTTSSCCCCSSCCEEEEEEECS
T ss_pred             EEEcCCCCccccccCCCCCCCcceEEEcC
Confidence            988844   456           888884

>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}

Probab=97.92  E-value=0.01  Score=56.71  Aligned_cols=118  Identities=14%  Similarity=0.131  Sum_probs=66.0

Q ss_pred             cccc-ceeEEEEc-cCCCEEEEee-CC----CcEEEEeecCC-CceEEEEecCcccCeEEEEeeCCCCCCEEEEEeCC--
Q 022111            9 GHED-TVHDVAMD-FYGKRLATAS-SD----SSIKIIGLSNS-ASQHLATLKGHRGPVWQVAWAHPKFGSILASCSYD--   78 (302)
Q Consensus         9 ~h~~-~v~~~~~s-~~~~~l~s~~-~d----~~v~lw~~~~~-~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~s~D--   78 (302)
                      +|.- .+...+|| |||++||-+. .+    .+|+++|+.++ .. ....+.   .....++|+++  |+.|+....|  
T Consensus       170 ~~~~~~~~~~~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~g~~~-l~~~~~---~~~~~~~WspD--g~~l~y~~~d~~  243 (751)
T 2xe4_A          170 GKAFCDVMEVKPAPPEHDLVAFSVDMSGNEVYTIEFKRISDPSQT-IADKVS---GTNGEIVWGPD--HTSLFYVTKDET  243 (751)
T ss_dssp             TCSCCEEEEEEECTTTTCEEEEEEESSSSSCEEEEEEETTCTTCC-CCCCEE---EECSCCEECSS--TTEEEEEEECTT
T ss_pred             CCCeEEEeeeEecCCCCCEEEEEEeCCCCceEEEEEEECCCCCEe-CCcccc---CceeeEEEecC--CCEEEEEEECCC
Confidence            3443 67788999 9999887332 22    35899998764 31 001111   11346789864  6766666665  


Q ss_pred             ---CeEEEEEcCCCCceeEEEEec-CCCCCeeEEEecCCCCCcEEEEEec---CCcEEEEEecC
Q 022111           79 ---GQVIIWKEGNQNDWTQAHTFN-DHKSSVNSIAWAPHELGLSLACGSS---DGNISVFTATA  135 (302)
Q Consensus        79 ---~~i~iwd~~~~~~~~~~~~~~-~h~~~i~~l~~~pd~~~~~l~sg~~---d~~v~~~~~~~  135 (302)
                         ..|.++++.+... .....+. ........+.|+||  |.+|+..+.   ...|.++|+..
T Consensus       244 ~~~~~v~~~~lgt~~~-~~~lv~~~~~~~~~~~~~~SpD--g~~l~~~~~~~~~~~l~~~d~~~  304 (751)
T 2xe4_A          244 LRENKVWRHVMGKLQS-EDVCLYEEHNPLFSAFMYKAAD--TNTLCIGSQSPETAEVHLLDLRK  304 (751)
T ss_dssp             CCEEEEEEEETTSCGG-GCEEEEECCCTTCEEEEEECTT--SSEEEEEEECSSCEEEEEEESSS
T ss_pred             CCCCEEEEEECCCCch-hcEEEEecCCCceEEEEEECCC--CCEEEEEecCCCCceEEEEECCC
Confidence               2566677755321 1111222 12345667899998  556555442   23555666653

>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}

Probab=97.85  E-value=0.0028  Score=60.09  Aligned_cols=54  Identities=22%  Similarity=0.348  Sum_probs=36.5

Q ss_pred             CCeEEEEEeccCCcceeeeeeccCCCcEEEEEEccCCCEEEEecCC-ceEEeeecCCce
Q 022111          234 DGTVVIWTCAKEGEQWEGRVLKDFKTPVWSVSWSLTGNLLAVADAN-NVTLWKEAVDGE  291 (302)
Q Consensus       234 D~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~la~~~~d-~i~~w~~~~~~~  291 (302)
                      ++.|+.||+.+.+..|....    ..+.++..++..|.+|.+++.| .++.||....+.
T Consensus       454 ~g~l~A~D~~tG~~~W~~~~----~~~~~~g~~~tagglvf~gt~dg~l~a~D~~tG~~  508 (689)
T 1yiq_A          454 SGKLIAWDPVKQQAAWEVPY----VTIFNGGTLSTAGNLVFEGSADGRVIAYAADTGEK  508 (689)
T ss_dssp             EEEEEEEETTTTEEEEEEEE----SSSCCCCEEEETTTEEEEECTTSEEEEEETTTCCE
T ss_pred             ceeEEEEECCCCCeEeEccC----CCCccCccceECCCEEEEECCCCcEEEEECCCCcc
Confidence            47799999887655554322    2334445666777888888777 699999765444

>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}

Probab=97.83  E-value=0.011  Score=50.38  Aligned_cols=237  Identities=10%  Similarity=0.124  Sum_probs=117.5

Q ss_pred             ccceeEEEEccCCCEEEEeeCCCcEEEEeecC-CCceEEEEecCcccCeEEEEeeCCCCCCEEEEEeCCCeE-EEEEcCC
Q 022111           11 EDTVHDVAMDFYGKRLATASSDSSIKIIGLSN-SASQHLATLKGHRGPVWQVAWAHPKFGSILASCSYDGQV-IIWKEGN   88 (302)
Q Consensus        11 ~~~v~~~~~s~~~~~l~s~~~d~~v~lw~~~~-~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~s~D~~i-~iwd~~~   88 (302)
                      ...+.++.|++ ++.++ ++..+.|..- .+. .+.+.+.....+.+.+..|.+.++  +.+++.+ .++.+ +-.|  .
T Consensus        79 ~~~~~~i~~~~-~~~~~-~g~~g~i~~S-~DgG~tW~~~~~~~~~~~~~~~i~~~~~--~~~~~~~-~~g~v~~S~D--g  150 (327)
T 2xbg_A           79 DYRFNSVSFQG-NEGWI-VGEPPIMLHT-TDGGQSWSQIPLDPKLPGSPRLIKALGN--GSAEMIT-NVGAIYRTKD--S  150 (327)
T ss_dssp             CCEEEEEEEET-TEEEE-EEETTEEEEE-SSTTSSCEECCCCTTCSSCEEEEEEEET--TEEEEEE-TTCCEEEESS--T
T ss_pred             CccEEEEEecC-CeEEE-EECCCeEEEE-CCCCCCceECccccCCCCCeEEEEEECC--CCEEEEe-CCccEEEEcC--C
Confidence            34678888875 44444 5566655442 221 222322211123445777877543  5555554 45543 3222  3


Q ss_pred             CCceeEEEEecCCCCCeeEEEecCCCCCcEEEEEecCCcEEEEEecCCCCeeeeeecccCCCCeEEEEeCCCCCCCceee
Q 022111           89 QNDWTQAHTFNDHKSSVNSIAWAPHELGLSLACGSSDGNISVFTATADGGWDTTRIDQAHPVGVTSVSWAPAMAPGALVG  168 (302)
Q Consensus        89 ~~~~~~~~~~~~h~~~i~~l~~~pd~~~~~l~sg~~d~~v~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~  168 (302)
                      +..|....  ..+...+..+.+.|+  +..++.+ ..+.+..-+-.....|....  ......+..+.+.++        
T Consensus       151 G~tW~~~~--~~~~~~~~~~~~~~~--~~~~~~g-~~G~~~~S~d~gG~tW~~~~--~~~~~~~~~~~~~~~--------  215 (327)
T 2xbg_A          151 GKNWQALV--QEAIGVMRNLNRSPS--GEYVAVS-SRGSFYSTWEPGQTAWEPHN--RTTSRRLHNMGFTPD--------  215 (327)
T ss_dssp             TSSEEEEE--CSCCCCEEEEEECTT--SCEEEEE-TTSSEEEEECTTCSSCEEEE--CCSSSCEEEEEECTT--------
T ss_pred             CCCCEEee--cCCCcceEEEEEcCC--CcEEEEE-CCCcEEEEeCCCCCceeECC--CCCCCccceeEECCC--------
Confidence            45565543  245567889999886  5556555 44544332110023454332  233445666766553        


Q ss_pred             cccCCCceeEEEeeCCCcEEEEEEecC-ccccccccccccCCCceeEEEeeCCCCCCccEEEEEecCCeEEEEEeccCCc
Q 022111          169 LGLLDPVQKLASCGCDNTVKVWKMYNG-IWKMDCFPALQMHSDWVRSVAWAPNLGLPKSTIASASQDGTVVIWTCAKEGE  247 (302)
Q Consensus       169 ~~~~~~~~~l~s~~~D~~v~iwd~~~~-~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~l~s~s~D~~i~iwd~~~~~~  247 (302)
                            + .+..++.++.+++.+...+ .|.......+ .+...+.++.+.|++    ..+++ +.++.|.  --.....
T Consensus       216 ------g-~~~~~~~~G~~~~s~~D~G~tW~~~~~~~~-~~~~~~~~v~~~~~~----~~~~~-g~~g~i~--~S~DgG~  280 (327)
T 2xbg_A          216 ------G-RLWMIVNGGKIAFSDPDNSENWGELLSPLR-RNSVGFLDLAYRTPN----EVWLA-GGAGALL--CSQDGGQ  280 (327)
T ss_dssp             ------S-CEEEEETTTEEEEEETTEEEEECCCBCTTS-SCCSCEEEEEESSSS----CEEEE-ESTTCEE--EESSTTS
T ss_pred             ------C-CEEEEeCCceEEEecCCCCCeeEeccCCcc-cCCcceEEEEecCCC----EEEEE-eCCCeEE--EeCCCCc
Confidence                  2 3445556777776531111 1221100001 122358899998763    44444 4567662  2223334


Q ss_pred             ceeeeee-ccCCCcEEEEEEccCCCEEEEecCCceEEee
Q 022111          248 QWEGRVL-KDFKTPVWSVSWSLTGNLLAVADANNVTLWK  285 (302)
Q Consensus       248 ~~~~~~~-~~~~~~v~~~~~spdg~~la~~~~d~i~~w~  285 (302)
                      .|..... ......++++.|.+++++++++.+..|..++
T Consensus       281 tW~~~~~~~~~~~~~~~v~~~~~~~~~~~G~~G~i~~~~  319 (327)
T 2xbg_A          281 TWQQDVDVKKVPSNFYKILFFSPDQGFILGQKGILLRYV  319 (327)
T ss_dssp             SCEECGGGTTSSSCCCEEEEEETTEEEEECSTTEEEEEC
T ss_pred             ccEEcCccCCCCCCeEEEEEECCCceEEEcCCceEEEEc
Confidence            4542211 1223567889998777666666433555444

>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}

Probab=97.78  E-value=0.0035  Score=59.37  Aligned_cols=80  Identities=13%  Similarity=0.232  Sum_probs=47.0

Q ss_pred             CCcEEEEEEecCccccccccccccCCCceeEEEeeCCCCCCccEEEEEecCCeEEEEEeccCCcceeeeeeccCCCcEEE
Q 022111          184 DNTVKVWKMYNGIWKMDCFPALQMHSDWVRSVAWAPNLGLPKSTIASASQDGTVVIWTCAKEGEQWEGRVLKDFKTPVWS  263 (302)
Q Consensus       184 D~~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~~~~~v~~  263 (302)
                      ++.|+.||+.+++..-.    +..+. .+..-.+...    +..++.++.|+.|+.||.++.+..|...+..+  ....-
T Consensus       454 ~g~l~A~D~~tG~~~W~----~~~~~-~~~~g~~~ta----gglvf~gt~dg~l~a~D~~tG~~lw~~~~~~~--~~~~p  522 (689)
T 1yiq_A          454 SGKLIAWDPVKQQAAWE----VPYVT-IFNGGTLSTA----GNLVFEGSADGRVIAYAADTGEKLWEQPAASG--VMAAP  522 (689)
T ss_dssp             EEEEEEEETTTTEEEEE----EEESS-SCCCCEEEET----TTEEEEECTTSEEEEEETTTCCEEEEEECSSC--CCSCC
T ss_pred             ceeEEEEECCCCCeEeE----ccCCC-CccCccceEC----CCEEEEECCCCcEEEEECCCCccceeeeCCCC--cccCc
Confidence            47799999987742111    11111 1222234444    36788899999999999987665554333221  11233


Q ss_pred             EEEccCCCEEE
Q 022111          264 VSWSLTGNLLA  274 (302)
Q Consensus       264 ~~~spdg~~la  274 (302)
                      +.|+.+|++++
T Consensus       523 ~ty~~~G~qyv  533 (689)
T 1yiq_A          523 VTYSVDGEQYV  533 (689)
T ss_dssp             EEEEETTEEEE
T ss_pred             eEEEECCEEEE
Confidence            67788997553

>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}

Probab=97.75  E-value=0.0038  Score=52.67  Aligned_cols=215  Identities=13%  Similarity=0.043  Sum_probs=113.3

Q ss_pred             CCEEEEeeCCCcEEEEeecCCCceEEEEecCcccCeEEEEeeCCCCCCEEEEEeCCCeEEEEEcCCCCceeEEEEecCCC
Q 022111           23 GKRLATASSDSSIKIIGLSNSASQHLATLKGHRGPVWQVAWAHPKFGSILASCSYDGQVIIWKEGNQNDWTQAHTFNDHK  102 (302)
Q Consensus        23 ~~~l~s~~~d~~v~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~h~  102 (302)
                      +..+..++.++.+..++.. +.  .......+...+.++...+  ++. |..++.++.+..+|.. +.   ....+....
T Consensus       107 ~~~l~v~t~~~~l~~~d~~-g~--~~~~~~~~~~~~~~~~~~~--~g~-l~vgt~~~~l~~~d~~-g~---~~~~~~~~~  176 (330)
T 3hxj_A          107 EDILYVTSMDGHLYAINTD-GT--EKWRFKTKKAIYATPIVSE--DGT-IYVGSNDNYLYAINPD-GT---EKWRFKTND  176 (330)
T ss_dssp             TTEEEEECTTSEEEEECTT-SC--EEEEEECSSCCCSCCEECT--TSC-EEEECTTSEEEEECTT-SC---EEEEEECSS
T ss_pred             CCEEEEEecCCEEEEEcCC-CC--EEEEEcCCCceeeeeEEcC--CCE-EEEEcCCCEEEEECCC-CC---EeEEEecCC
Confidence            4456667788888888865 22  2333333444455555532  244 5567788999999876 32   233333344


Q ss_pred             CCeeEEEecCCCCCcEEEEEecCCcEEEEEecCCCCeeeeeecccCCCCeEEEEeCCCCCCCceeecccCCCceeEEEee
Q 022111          103 SSVNSIAWAPHELGLSLACGSSDGNISVFTATADGGWDTTRIDQAHPVGVTSVSWAPAMAPGALVGLGLLDPVQKLASCG  182 (302)
Q Consensus       103 ~~i~~l~~~pd~~~~~l~sg~~d~~v~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~  182 (302)
                      ..+.++...++  +. +..++  +.+..++ .+ +. ...... .....+.++...+               ...|..++
T Consensus       177 ~~~~~~~~d~~--g~-l~v~t--~~l~~~d-~~-g~-~~~~~~-~~~~~~~~~~~~~---------------~g~l~v~t  232 (330)
T 3hxj_A          177 AITSAASIGKD--GT-IYFGS--DKVYAIN-PD-GT-EKWNFY-AGYWTVTRPAISE---------------DGTIYVTS  232 (330)
T ss_dssp             CCCSCCEECTT--CC-EEEES--SSEEEEC-TT-SC-EEEEEC-CSSCCCSCCEECT---------------TSCEEEEE
T ss_pred             CceeeeEEcCC--CE-EEEEe--CEEEEEC-CC-Cc-EEEEEc-cCCcceeceEECC---------------CCeEEEEc
Confidence            55666666554  44 44444  7787887 32 22 112221 1112233333332               23566677


Q ss_pred             CCCcEEEEEEecCccccccccccccCCCceeEEEeeCCCCCCccEEEEEecCCeEEEEEeccCCcceeeeeeccCCCcEE
Q 022111          183 CDNTVKVWKMYNGIWKMDCFPALQMHSDWVRSVAWAPNLGLPKSTIASASQDGTVVIWTCAKEGEQWEGRVLKDFKTPVW  262 (302)
Q Consensus       183 ~D~~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~~~~~v~  262 (302)
                      .++.+..+|.. +.    .+..+......+.++...++     ..|..++.++.|..+|. +....+...   .....+.
T Consensus       233 ~~~gl~~~~~~-g~----~~~~~~~~~~~~~~~~~~~~-----g~l~v~t~~ggl~~~d~-~g~~~~~~~---~~~~~~~  298 (330)
T 3hxj_A          233 LDGHLYAINPD-GT----EKWRFKTGKRIESSPVIGNT-----DTIYFGSYDGHLYAINP-DGTEKWNFE---TGSWIIA  298 (330)
T ss_dssp             TTTEEEEECTT-SC----EEEEEECSSCCCSCCEECTT-----SCEEEECTTCEEEEECT-TSCEEEEEE---CSSCCCS
T ss_pred             CCCeEEEECCC-CC----EeEEeeCCCCccccceEcCC-----CeEEEecCCCCEEEECC-CCcEEEEEE---cCCcccc
Confidence            77778887642 21    11111112222334444444     35778888888999985 222222211   1123456


Q ss_pred             EEEEccCCCEEEEecCC-ceEEeee
Q 022111          263 SVSWSLTGNLLAVADAN-NVTLWKE  286 (302)
Q Consensus       263 ~~~~spdg~~la~~~~d-~i~~w~~  286 (302)
                      ++...++|++.+.+ .+ .+++...
T Consensus       299 ~~~~d~~g~l~~gt-~~G~~~~~~~  322 (330)
T 3hxj_A          299 TPVIDENGTIYFGT-RNGKFYALFN  322 (330)
T ss_dssp             CCEECTTCCEEEEC-TTSCEEEEEC
T ss_pred             ceEEcCCCEEEEEc-CCCeEEEEec
Confidence            67777888776544 55 5666654

>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A

Probab=97.74  E-value=0.0044  Score=58.32  Aligned_cols=235  Identities=10%  Similarity=0.050  Sum_probs=114.7

Q ss_pred             EEEEccCCCEEEEeeC-CCcEEEEeecCCCceEEEEecCcccCeEEEEeeCCCCCCEEEEEe-CC-----CeEEEEEcCC
Q 022111           16 DVAMDFYGKRLATASS-DSSIKIIGLSNSASQHLATLKGHRGPVWQVAWAHPKFGSILASCS-YD-----GQVIIWKEGN   88 (302)
Q Consensus        16 ~~~~s~~~~~l~s~~~-d~~v~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~s-~D-----~~i~iwd~~~   88 (302)
                      ++++..+++.++.||. +..+.+||........+..+...... .+++..+  ++++++.|+ .+     ..+.+||..+
T Consensus       247 ~~~~~~~g~lyv~GG~~~~~v~~yd~~t~~W~~~~~~~~~R~~-~s~~~~~--dg~iyv~GG~~~~~~~~~~~e~yd~~t  323 (656)
T 1k3i_A          247 GISMDGNGQIVVTGGNDAKKTSLYDSSSDSWIPGPDMQVARGY-QSSATMS--DGRVFTIGGSWSGGVFEKNGEVYSPSS  323 (656)
T ss_dssp             EEEECTTSCEEEECSSSTTCEEEEEGGGTEEEECCCCSSCCSS-CEEEECT--TSCEEEECCCCCSSSCCCCEEEEETTT
T ss_pred             cccCCCCCCEEEeCCCCCCceEEecCcCCceeECCCCCccccc-cceEEec--CCeEEEEeCcccCCcccccceEeCCCC
Confidence            4567788999999984 46899999865544433333221111 1233332  378888888 44     5689999865


Q ss_pred             CCceeEEEEe---cCCCCCeeEEEecCCCCCcEEEEEecC---------CcEEEEEecCCCCeeeeeeccc------CCC
Q 022111           89 QNDWTQAHTF---NDHKSSVNSIAWAPHELGLSLACGSSD---------GNISVFTATADGGWDTTRIDQA------HPV  150 (302)
Q Consensus        89 ~~~~~~~~~~---~~h~~~i~~l~~~pd~~~~~l~sg~~d---------~~v~~~~~~~~~~~~~~~~~~~------h~~  150 (302)
                      . .|..+...   ...... ....+..+  +..++.|+.+         ..+..||.....-+........      ...
T Consensus       324 ~-~W~~~~~~~~~p~~~~~-~~~~~~~~--~~iyv~Gg~~g~~~~~~~~~~v~~yd~~~~~w~~~~~~~~~~~~~~~~~~  399 (656)
T 1k3i_A          324 K-TWTSLPNAKVNPMLTAD-KQGLYRSD--NHAWLFGWKKGSVFQAGPSTAMNWYYTSGSGDVKSAGKRQSNRGVAPDAM  399 (656)
T ss_dssp             T-EEEEETTSCSGGGCCCC-TTGGGTTT--CSCCEEECGGGCEEECCSSSEEEEEECSTTCEEEEEEECEETTEECCCCB
T ss_pred             C-cceeCCCcccccccccc-ccceeecC--CceEEEECCCCcEEEecCccceeeeecCCcceeecCCccccccccCCCCC
Confidence            3 45433100   000000 00011122  2334444433         3556777654321211110000      000


Q ss_pred             CeEEEEeCCCCCCCceeecccCCCceeEEEeeCCC-----------cEEEEEEecCccccccccccccCCCce-eEEEee
Q 022111          151 GVTSVSWAPAMAPGALVGLGLLDPVQKLASCGCDN-----------TVKVWKMYNGIWKMDCFPALQMHSDWV-RSVAWA  218 (302)
Q Consensus       151 ~v~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~D~-----------~v~iwd~~~~~~~~~~~~~~~~h~~~v-~~v~~~  218 (302)
                      .-.++.+..             .+++.++.||.++           .+.+||..+..|......  ....... .+....
T Consensus       400 ~~~av~~~~-------------~~~~i~v~GG~~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~~--~mp~~R~~~~~~~l  464 (656)
T 1k3i_A          400 CGNAVMYDA-------------VKGKILTFGGSPDYQDSDATTNAHIITLGEPGTSPNTVFASN--GLYFARTFHTSVVL  464 (656)
T ss_dssp             TCEEEEEET-------------TTTEEEEECCBSSSSSSBCCCCEEEEECCSTTSCCEEEECTT--CCSSCCBSCEEEEC
T ss_pred             CCceEeccC-------------CCCeEEEEeCCCCCCCCCcCCcceEEEcCCCCCCCeeEEccC--CCCCCcccCCeEEC
Confidence            112222211             1246777777543           577787766555421100  1111111 233445


Q ss_pred             CCCCCCccEEEEEecC-----------CeEEEEEeccCCcceeeee-eccCCCcEEEEEEccCCCEEEEecC
Q 022111          219 PNLGLPKSTIASASQD-----------GTVVIWTCAKEGEQWEGRV-LKDFKTPVWSVSWSLTGNLLAVADA  278 (302)
Q Consensus       219 p~~~~~~~~l~s~s~D-----------~~i~iwd~~~~~~~~~~~~-~~~~~~~v~~~~~spdg~~la~~~~  278 (302)
                      |++    +.++.|+.+           ..+.+||....  .|.... +...........+.|||++++.|+.
T Consensus       465 ~~g----~i~v~GG~~~~~~~~~~~~~~~v~~ydp~t~--~W~~~~~~~~~R~~hs~a~ll~dg~v~v~GG~  530 (656)
T 1k3i_A          465 PDG----STFITGGQRRGIPFEDSTPVFTPEIYVPEQD--TFYKQNPNSIVRVYHSISLLLPDGRVFNGGGG  530 (656)
T ss_dssp             TTS----CEEEECCBSBCCTTCCCSBCCCCEEEEGGGT--EEEECCCCSSCCCTTEEEEECTTSCEEEEECC
T ss_pred             CCC----CEEEECCcccCcCcCCCCcccceEEEcCCCC--ceeecCCCCCccccccHhhcCCCcEEEecCCC
Confidence            664    678888764           46899998753  343211 0011111223456799999999875

>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*

Probab=97.73  E-value=0.016  Score=49.11  Aligned_cols=241  Identities=8%  Similarity=-0.016  Sum_probs=119.8

Q ss_pred             ceeEEEEccCCCEEEEeeCCCcEEEEeecCCCceEEEEec-----------------CcccCeEEEEeeCCCCCCEEEEE
Q 022111           13 TVHDVAMDFYGKRLATASSDSSIKIIGLSNSASQHLATLK-----------------GHRGPVWQVAWAHPKFGSILASC   75 (302)
Q Consensus        13 ~v~~~~~s~~~~~l~s~~~d~~v~lw~~~~~~~~~~~~~~-----------------~h~~~v~~v~~~~~~~~~~l~s~   75 (302)
                      ...+++++++++++.++..++.|..|+........+....                 ........+++.+. ++++++ +
T Consensus        20 ~p~~i~~d~~g~~l~v~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~p~gi~~~~~-~g~l~v-~   97 (322)
T 2fp8_A           20 APNSFTFDSTNKGFYTSVQDGRVIKYEGPNSGFVDFAYASPYWNKAFCENSTDAEKRPLCGRTYDISYNLQ-NNQLYI-V   97 (322)
T ss_dssp             CCCCEECCTTCSSEEEECTTSEEEEECCTTTCEEEEEESCTTCCHHHHTTCCCGGGHHHHCCEEEEEEETT-TTEEEE-E
T ss_pred             CceEEEEcCCCCEEEEEcCCCeEEEECCCCCceEEEecccccccccccccccchhccccCCCCceEEEcCC-CCcEEE-E
Confidence            3556788999987778888899999887543222211100                 01234678888642 255544 4


Q ss_pred             eCCCeEEEEEcCCCCceeEEE-EecC-CCCCeeEEEecC-CCCCcEEEEEec-----------------CCcEEEEEecC
Q 022111           76 SYDGQVIIWKEGNQNDWTQAH-TFND-HKSSVNSIAWAP-HELGLSLACGSS-----------------DGNISVFTATA  135 (302)
Q Consensus        76 s~D~~i~iwd~~~~~~~~~~~-~~~~-h~~~i~~l~~~p-d~~~~~l~sg~~-----------------d~~v~~~~~~~  135 (302)
                      ...+.+..+|..++. .+.+. ...+ .......+++.| +  |.+.++-..                 ++.|..|+...
T Consensus        98 d~~~~i~~~d~~~g~-~~~~~~~~~~~~~~~p~~i~~d~~~--G~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~  174 (322)
T 2fp8_A           98 DCYYHLSVVGSEGGH-ATQLATSVDGVPFKWLYAVTVDQRT--GIVYFTDVSTLYDDRGVQQIMDTSDKTGRLIKYDPST  174 (322)
T ss_dssp             ETTTEEEEECTTCEE-CEEEESEETTEECSCEEEEEECTTT--CCEEEEESCSSCCTTCHHHHHHHTCCCEEEEEEETTT
T ss_pred             ECCCCEEEEeCCCCE-EEEecccCCCCcccccceEEEecCC--CEEEEECCcccccccccceehcccCCCceEEEEeCCC
Confidence            444557777765321 11111 1111 123467888888 6  444443221                 24455555422


Q ss_pred             CCCeeeeeecccCCCCeEEEEeCCCCCCCceeecccCCCceeEEEeeCCCcEEEEEEecCcc-ccccccccccCCCceeE
Q 022111          136 DGGWDTTRIDQAHPVGVTSVSWAPAMAPGALVGLGLLDPVQKLASCGCDNTVKVWKMYNGIW-KMDCFPALQMHSDWVRS  214 (302)
Q Consensus       136 ~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~D~~v~iwd~~~~~~-~~~~~~~~~~h~~~v~~  214 (302)
                      . ..... ..  .......++++|++             ..++++-...+.|.+|++..... ....+..+   .+ ...
T Consensus       175 ~-~~~~~-~~--~~~~p~gia~~~dg-------------~~lyv~d~~~~~I~~~~~~~~~~~~~~~~~~~---~g-P~g  233 (322)
T 2fp8_A          175 K-ETTLL-LK--ELHVPGGAEVSADS-------------SFVLVAEFLSHQIVKYWLEGPKKGTAEVLVKI---PN-PGN  233 (322)
T ss_dssp             T-EEEEE-EE--EESCCCEEEECTTS-------------SEEEEEEGGGTEEEEEESSSTTTTCEEEEEEC---SS-EEE
T ss_pred             C-EEEEe-cc--CCccCcceEECCCC-------------CEEEEEeCCCCeEEEEECCCCcCCccceEEeC---CC-CCC
Confidence            1 11111 00  01123456676643             12455556678899999864311 11111111   22 567


Q ss_pred             EEeeCCCCCCccEEEEEec----------CCeEEEEEeccCCcceeeeeeccC---CCcEEEEEEccCCCEEEEecCC-c
Q 022111          215 VAWAPNLGLPKSTIASASQ----------DGTVVIWTCAKEGEQWEGRVLKDF---KTPVWSVSWSLTGNLLAVADAN-N  280 (302)
Q Consensus       215 v~~~p~~~~~~~~l~s~s~----------D~~i~iwd~~~~~~~~~~~~~~~~---~~~v~~~~~spdg~~la~~~~d-~  280 (302)
                      +++.+++    +..++...          .+.|..+|...  .. ...+....   -..+.++++ .+|+++++...+ .
T Consensus       234 i~~d~~G----~l~va~~~~~~~~~~~~~~~~v~~~d~~G--~~-~~~~~~~~g~~~~~~~~~~~-~~g~L~v~~~~~~~  305 (322)
T 2fp8_A          234 IKRNADG----HFWVSSSEELDGNMHGRVDPKGIKFDEFG--NI-LEVIPLPPPFAGEHFEQIQE-HDGLLYIGTLFHGS  305 (322)
T ss_dssp             EEECTTS----CEEEEEEEETTSSTTSCEEEEEEEECTTS--CE-EEEEECCTTTTTSCCCEEEE-ETTEEEEECSSCSE
T ss_pred             eEECCCC----CEEEEecCcccccccCCCccEEEEECCCC--CE-EEEEECCCCCccccceEEEE-eCCEEEEeecCCCc
Confidence            8888875    45555443          34566666432  11 11111111   123566666 455555444333 6


Q ss_pred             eEEeeec
Q 022111          281 VTLWKEA  287 (302)
Q Consensus       281 i~~w~~~  287 (302)
                      |..++.+
T Consensus       306 i~~~~~~  312 (322)
T 2fp8_A          306 VGILVYD  312 (322)
T ss_dssp             EEEEEC-
T ss_pred             eEEEecc
Confidence            8888764

>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}

Probab=97.72  E-value=0.017  Score=49.19  Aligned_cols=247  Identities=11%  Similarity=0.128  Sum_probs=126.2

Q ss_pred             ccceeEEEEccCCCEEEEeeCCCcEEEEeecCC-CceEEEE-ecCcccCeEEEEeeCCCCCCEEEEEeCCCeEEEEEcCC
Q 022111           11 EDTVHDVAMDFYGKRLATASSDSSIKIIGLSNS-ASQHLAT-LKGHRGPVWQVAWAHPKFGSILASCSYDGQVIIWKEGN   88 (302)
Q Consensus        11 ~~~v~~~~~s~~~~~l~s~~~d~~v~lw~~~~~-~~~~~~~-~~~h~~~v~~v~~~~~~~~~~l~s~s~D~~i~iwd~~~   88 (302)
                      ...+.++.|..++..++ ++..+.|... .+.+ +.+.+.. .......+.+|.|.+   +..++ ++.++.|.. ....
T Consensus        35 ~~~~~~v~~~~~~~~~~-~G~~g~i~~s-~DgG~tW~~~~~~~~~~~~~~~~i~~~~---~~~~~-~g~~g~i~~-S~Dg  107 (327)
T 2xbg_A           35 TATILDMSFIDRHHGWL-VGVNATLMET-RDGGQTWEPRTLVLDHSDYRFNSVSFQG---NEGWI-VGEPPIMLH-TTDG  107 (327)
T ss_dssp             SSCEEEEEESSSSCEEE-EETTTEEEEE-SSTTSSCEECCCCCSCCCCEEEEEEEET---TEEEE-EEETTEEEE-ESST
T ss_pred             CCcEEEEEECCCCcEEE-EcCCCeEEEe-CCCCCCCeECCCCCCCCCccEEEEEecC---CeEEE-EECCCeEEE-ECCC
Confidence            34688898887777777 5567765332 2222 2232211 112234578888863   34444 456665433 2223


Q ss_pred             CCceeEEEEecCCCCCeeEEEecCCCCCcEEEEEecCCcEEEEEecC-CCCeeeeeecccCCCCeEEEEeCCCCCCCcee
Q 022111           89 QNDWTQAHTFNDHKSSVNSIAWAPHELGLSLACGSSDGNISVFTATA-DGGWDTTRIDQAHPVGVTSVSWAPAMAPGALV  167 (302)
Q Consensus        89 ~~~~~~~~~~~~h~~~i~~l~~~pd~~~~~l~sg~~d~~v~~~~~~~-~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~  167 (302)
                      +..|+.......+.+.+..+.+.++  +..++.+ .++.|  |.... ...|....  ......+..+.+.|+       
T Consensus       108 G~tW~~~~~~~~~~~~~~~i~~~~~--~~~~~~~-~~g~v--~~S~DgG~tW~~~~--~~~~~~~~~~~~~~~-------  173 (327)
T 2xbg_A          108 GQSWSQIPLDPKLPGSPRLIKALGN--GSAEMIT-NVGAI--YRTKDSGKNWQALV--QEAIGVMRNLNRSPS-------  173 (327)
T ss_dssp             TSSCEECCCCTTCSSCEEEEEEEET--TEEEEEE-TTCCE--EEESSTTSSEEEEE--CSCCCCEEEEEECTT-------
T ss_pred             CCCceECccccCCCCCeEEEEEECC--CCEEEEe-CCccE--EEEcCCCCCCEEee--cCCCcceEEEEEcCC-------
Confidence            4556554322223345677777654  4445544 45544  33332 23455432  233445677777653       


Q ss_pred             ecccCCCceeEEEeeCCCcEEE-EEEecCccccccccccccCCCceeEEEeeCCCCCCccEEEEEecCCeEEEEEeccCC
Q 022111          168 GLGLLDPVQKLASCGCDNTVKV-WKMYNGIWKMDCFPALQMHSDWVRSVAWAPNLGLPKSTIASASQDGTVVIWTCAKEG  246 (302)
Q Consensus       168 ~~~~~~~~~~l~s~~~D~~v~i-wd~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~l~s~s~D~~i~iwd~~~~~  246 (302)
                             +..++.+ .++.+.. .|-....|..  +.  ......+..+.+.|++    . +..++.+|.+++.+.+ ..
T Consensus       174 -------~~~~~~g-~~G~~~~S~d~gG~tW~~--~~--~~~~~~~~~~~~~~~g----~-~~~~~~~G~~~~s~~D-~G  235 (327)
T 2xbg_A          174 -------GEYVAVS-SRGSFYSTWEPGQTAWEP--HN--RTTSRRLHNMGFTPDG----R-LWMIVNGGKIAFSDPD-NS  235 (327)
T ss_dssp             -------SCEEEEE-TTSSEEEEECTTCSSCEE--EE--CCSSSCEEEEEECTTS----C-EEEEETTTEEEEEETT-EE
T ss_pred             -------CcEEEEE-CCCcEEEEeCCCCCceeE--CC--CCCCCccceeEECCCC----C-EEEEeCCceEEEecCC-CC
Confidence                   2445444 4444433 2211122221  11  2345568889998874    3 4455677887776311 12


Q ss_pred             cceeeeeec--cCCCcEEEEEEccCCCEEEEecCCceEEeeecCCceEEEeee
Q 022111          247 EQWEGRVLK--DFKTPVWSVSWSLTGNLLAVADANNVTLWKEAVDGEWQQVSV  297 (302)
Q Consensus       247 ~~~~~~~~~--~~~~~v~~~~~spdg~~la~~~~d~i~~w~~~~~~~~~~~~~  297 (302)
                      ..|......  .....+.+++|.|++++++++....+ ++.......|.+...
T Consensus       236 ~tW~~~~~~~~~~~~~~~~v~~~~~~~~~~~g~~g~i-~~S~DgG~tW~~~~~  287 (327)
T 2xbg_A          236 ENWGELLSPLRRNSVGFLDLAYRTPNEVWLAGGAGAL-LCSQDGGQTWQQDVD  287 (327)
T ss_dssp             EEECCCBCTTSSCCSCEEEEEESSSSCEEEEESTTCE-EEESSTTSSCEECGG
T ss_pred             CeeEeccCCcccCCcceEEEEecCCCEEEEEeCCCeE-EEeCCCCcccEEcCc
Confidence            234321111  11235889999998888888764445 333333345887654

>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A

Probab=97.68  E-value=0.004  Score=51.20  Aligned_cols=186  Identities=11%  Similarity=0.110  Sum_probs=101.1

Q ss_pred             eeEEEEccCCCEEEEeeCCC--cEEEEeecCCCceEEEEecCcccC-eEEEEeeCCCCCCEEEEEeCCCeEEEEEcCCCC
Q 022111           14 VHDVAMDFYGKRLATASSDS--SIKIIGLSNSASQHLATLKGHRGP-VWQVAWAHPKFGSILASCSYDGQVIIWKEGNQN   90 (302)
Q Consensus        14 v~~~~~s~~~~~l~s~~~d~--~v~lw~~~~~~~~~~~~~~~h~~~-v~~v~~~~~~~~~~l~s~s~D~~i~iwd~~~~~   90 (302)
                      ...+.|+ ++....+.|.++  .|+.+|+.+..  .+..+.-.... --.+.+..   +++.+..-.++.+.++|.++..
T Consensus        45 tqGL~~~-~~~LyestG~~g~S~v~~vD~~Tgk--v~~~~~l~~~~FgeGit~~g---~~ly~ltw~~~~v~v~D~~t~~  118 (262)
T 3nol_A           45 TEGFFYR-NGYFYESTGLNGRSSIRKVDIESGK--TLQQIELGKRYFGEGISDWK---DKIVGLTWKNGLGFVWNIRNLR  118 (262)
T ss_dssp             EEEEEEE-TTEEEEEEEETTEEEEEEECTTTCC--EEEEEECCTTCCEEEEEEET---TEEEEEESSSSEEEEEETTTCC
T ss_pred             cceEEEE-CCEEEEECCCCCCceEEEEECCCCc--EEEEEecCCccceeEEEEeC---CEEEEEEeeCCEEEEEECccCc
Confidence            3568888 677777888876  89999986643  34443322211 12355532   3455555568999999987764


Q ss_pred             ceeEEEEecCCCCCeeEEEecCCCCCcEEEEEecCCcEEEEEecCCCCeeeeeec-ccCC-CCeEEEEeCCCCCCCceee
Q 022111           91 DWTQAHTFNDHKSSVNSIAWAPHELGLSLACGSSDGNISVFTATADGGWDTTRID-QAHP-VGVTSVSWAPAMAPGALVG  168 (302)
Q Consensus        91 ~~~~~~~~~~h~~~i~~l~~~pd~~~~~l~sg~~d~~v~~~~~~~~~~~~~~~~~-~~h~-~~v~~~~~~~~~~~~~~~~  168 (302)
                         .+.++... .  ....+++|  +..|.....++.|.++|..+.......... .+.+ ..++.+.|.          
T Consensus       119 ---~~~ti~~~-~--eG~glt~d--g~~L~~SdGs~~i~~iDp~T~~v~~~I~V~~~g~~~~~lNELe~~----------  180 (262)
T 3nol_A          119 ---QVRSFNYD-G--EGWGLTHN--DQYLIMSDGTPVLRFLDPESLTPVRTITVTAHGEELPELNELEWV----------  180 (262)
T ss_dssp             ---EEEEEECS-S--CCCCEEEC--SSCEEECCSSSEEEEECTTTCSEEEEEECEETTEECCCEEEEEEE----------
T ss_pred             ---EEEEEECC-C--CceEEecC--CCEEEEECCCCeEEEEcCCCCeEEEEEEeccCCccccccceeEEE----------
Confidence               44455422 1  22233345  345555555778888876543222111111 0111 123345553          


Q ss_pred             cccCCCceeEEEeeCCCcEEEEEEecCcccccc-ccccc-------cCCCceeEEEeeCCCCCCccEEEEE
Q 022111          169 LGLLDPVQKLASCGCDNTVKVWKMYNGIWKMDC-FPALQ-------MHSDWVRSVAWAPNLGLPKSTIASA  231 (302)
Q Consensus       169 ~~~~~~~~~l~s~~~D~~v~iwd~~~~~~~~~~-~~~~~-------~h~~~v~~v~~~p~~~~~~~~l~s~  231 (302)
                           ++..++..-.++.|.+.|..++...... ...+.       .-.+.-+.|+|+|+.   ...+++|
T Consensus       181 -----~G~lyan~w~~~~I~vIDp~tG~V~~~Id~~~L~~~~~~~~~~~~vlNGIA~dp~~---~~lfVTG  243 (262)
T 3nol_A          181 -----DGEIFANVWQTNKIVRIDPETGKVTGIIDLNGILAEAGPLPSPIDVLNGIAWDKEH---HRLFVTG  243 (262)
T ss_dssp             -----TTEEEEEETTSSEEEEECTTTCBEEEEEECTTGGGGSCSCCSSCCCEEEEEEETTT---TEEEEEE
T ss_pred             -----CCEEEEEEccCCeEEEEECCCCcEEEEEECCcCccccccccCcCCceEEEEEcCCC---CEEEEEC
Confidence                 2456666666788888888776321000 00011       112346889999985   3566666

>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}

Probab=97.65  E-value=0.0056  Score=58.59  Aligned_cols=158  Identities=11%  Similarity=0.044  Sum_probs=78.9

Q ss_pred             CeEEEEee-CCCCCCEEEEEe-CC----CeEEEEEcCCC-CceeEEEEecCCCCCeeEEEecCCCCCcEEEEEecCC---
Q 022111           57 PVWQVAWA-HPKFGSILASCS-YD----GQVIIWKEGNQ-NDWTQAHTFNDHKSSVNSIAWAPHELGLSLACGSSDG---  126 (302)
Q Consensus        57 ~v~~v~~~-~~~~~~~l~s~s-~D----~~i~iwd~~~~-~~~~~~~~~~~h~~~i~~l~~~pd~~~~~l~sg~~d~---  126 (302)
                      .+...+|+ |+  |++||-.. .+    .+|.++|+.++ ....  ..+.   .....++|+||  +..|+....|.   
T Consensus       175 ~~~~~~~S~PD--G~~lAy~~~~~G~~~~~l~v~dl~~g~~~l~--~~~~---~~~~~~~WspD--g~~l~y~~~d~~~~  245 (751)
T 2xe4_A          175 DVMEVKPAPPE--HDLVAFSVDMSGNEVYTIEFKRISDPSQTIA--DKVS---GTNGEIVWGPD--HTSLFYVTKDETLR  245 (751)
T ss_dssp             EEEEEEECTTT--TCEEEEEEESSSSSCEEEEEEETTCTTCCCC--CCEE---EECSCCEECSS--TTEEEEEEECTTCC
T ss_pred             EEeeeEecCCC--CCEEEEEEeCCCCceEEEEEEECCCCCEeCC--cccc---CceeeEEEecC--CCEEEEEEECCCCC
Confidence            46778998 64  78776443 22    35999998765 3110  1111   11356889998  55666666552   


Q ss_pred             --cEEEEEecCCCCeeeeeecccCCCCeEEEEeCCCCCCCceeecccCCCceeEEEee---CCCcEEEEEEecCcccc--
Q 022111          127 --NISVFTATADGGWDTTRIDQAHPVGVTSVSWAPAMAPGALVGLGLLDPVQKLASCG---CDNTVKVWKMYNGIWKM--  199 (302)
Q Consensus       127 --~v~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~---~D~~v~iwd~~~~~~~~--  199 (302)
                        .|.++++.....................+.|+|++              +.|+..+   ....|.++|+.++....  
T Consensus       246 ~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~SpDg--------------~~l~~~~~~~~~~~l~~~d~~~~~~~~~~  311 (751)
T 2xe4_A          246 ENKVWRHVMGKLQSEDVCLYEEHNPLFSAFMYKAADT--------------NTLCIGSQSPETAEVHLLDLRKGNAHNTL  311 (751)
T ss_dssp             EEEEEEEETTSCGGGCEEEEECCCTTCEEEEEECTTS--------------SEEEEEEECSSCEEEEEEESSSCTTCCCE
T ss_pred             CCEEEEEECCCCchhcEEEEecCCCceEEEEEECCCC--------------CEEEEEecCCCCceEEEEECCCCCCCcee
Confidence              45555554321111111111222235677888864              4444332   23457778876542111  


Q ss_pred             ccccccccCCCceeEEEeeCCCCCCccEEEEEecC--CeEEEEEec
Q 022111          200 DCFPALQMHSDWVRSVAWAPNLGLPKSTIASASQD--GTVVIWTCA  243 (302)
Q Consensus       200 ~~~~~~~~h~~~v~~v~~~p~~~~~~~~l~s~s~D--~~i~iwd~~  243 (302)
                      ..+  .....+...++.|+..    +..++....+  +..+||.+.
T Consensus       312 ~~l--~~~~~~~~~s~~~~~g----~~l~~~t~~~~a~~~~L~~~d  351 (751)
T 2xe4_A          312 EIV--RPREKGVRYDVQMHGT----SHLVILTNEGGAVNHKLLIAP  351 (751)
T ss_dssp             EES--SCCCTTCCEEEEEETT----TEEEEEECTTTCTTCEEEEEE
T ss_pred             EEe--ecCCCCceEEEeeeeC----CEEEEEeCCCCCCCcEEEEEc
Confidence            111  1223444566665543    2444444444  444555443

>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1

Probab=97.64  E-value=0.018  Score=47.21  Aligned_cols=224  Identities=13%  Similarity=0.033  Sum_probs=120.9

Q ss_pred             ceeEEEEccCCCEEEEee-CCCcEEEEeecCCCceEEEEecCcccCeEEEEeeCCCCCCEEEEEeCCCeEEEEEcCCCCc
Q 022111           13 TVHDVAMDFYGKRLATAS-SDSSIKIIGLSNSASQHLATLKGHRGPVWQVAWAHPKFGSILASCSYDGQVIIWKEGNQND   91 (302)
Q Consensus        13 ~v~~~~~s~~~~~l~s~~-~d~~v~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~s~D~~i~iwd~~~~~~   91 (302)
                      .+..+++++++..|..+. ..+.|..++........  .+.........+++.+. .+.++++....+.|.++++.....
T Consensus        37 ~~~gi~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~--~~~~~~~~p~~ia~d~~-~~~lyv~d~~~~~I~~~~~~g~~~  113 (267)
T 1npe_A           37 VIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTT--IIRQDLGSPEGIALDHL-GRTIFWTDSQLDRIEVAKMDGTQR  113 (267)
T ss_dssp             EEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEE--EECTTCCCEEEEEEETT-TTEEEEEETTTTEEEEEETTSCSC
T ss_pred             cEEEEEEecCCCEEEEEECCCCEEEEEecCCCCcEE--EEECCCCCccEEEEEec-CCeEEEEECCCCEEEEEEcCCCCE
Confidence            456788998765555444 56789999876532221  22222235678888753 255666667788999998854321


Q ss_pred             eeEEEEecCCCCCeeEEEecCCCCCcEEEEEec--CCcEEEEEecCCCCeeeeeecccCCCCeEEEEeCCCCCCCceeec
Q 022111           92 WTQAHTFNDHKSSVNSIAWAPHELGLSLACGSS--DGNISVFTATADGGWDTTRIDQAHPVGVTSVSWAPAMAPGALVGL  169 (302)
Q Consensus        92 ~~~~~~~~~h~~~i~~l~~~pd~~~~~l~sg~~--d~~v~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~  169 (302)
                       ..+  ..........+++.|+. +.+.++...  .+.|..++..... ..  .+..........++++|++        
T Consensus       114 -~~~--~~~~~~~P~~i~vd~~~-g~lyv~~~~~~~~~I~~~~~dg~~-~~--~~~~~~~~~P~gia~d~~~--------  178 (267)
T 1npe_A          114 -RVL--FDTGLVNPRGIVTDPVR-GNLYWTDWNRDNPKIETSHMDGTN-RR--ILAQDNLGLPNGLTFDAFS--------  178 (267)
T ss_dssp             -EEE--ECSSCSSEEEEEEETTT-TEEEEEECCSSSCEEEEEETTSCC-CE--EEECTTCSCEEEEEEETTT--------
T ss_pred             -EEE--EECCCCCccEEEEeeCC-CEEEEEECCCCCcEEEEEecCCCC-cE--EEEECCCCCCcEEEEcCCC--------
Confidence             111  12122456899999863 333333322  3567666653211 11  1111112234667777643        


Q ss_pred             ccCCCceeEEEeeCCCcEEEEEEecCccccccccccccCCCceeEEEeeCCCCCCccEEEEEecCCeEEEEEeccCCcce
Q 022111          170 GLLDPVQKLASCGCDNTVKVWKMYNGIWKMDCFPALQMHSDWVRSVAWAPNLGLPKSTIASASQDGTVVIWTCAKEGEQW  249 (302)
Q Consensus       170 ~~~~~~~~l~s~~~D~~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~l~s~s~D~~i~iwd~~~~~~~~  249 (302)
                           +.++++....+.|.++|+...... ..   +.+ ...-..++..  +   +..+++....+.|..+|......  
T Consensus       179 -----~~lyv~d~~~~~I~~~~~~g~~~~-~~---~~~-~~~P~gi~~d--~---~~lyva~~~~~~v~~~d~~~g~~--  241 (267)
T 1npe_A          179 -----SQLCWVDAGTHRAECLNPAQPGRR-KV---LEG-LQYPFAVTSY--G---KNLYYTDWKTNSVIAMDLAISKE--  241 (267)
T ss_dssp             -----TEEEEEETTTTEEEEEETTEEEEE-EE---EEC-CCSEEEEEEE--T---TEEEEEETTTTEEEEEETTTTEE--
T ss_pred             -----CEEEEEECCCCEEEEEecCCCceE-EE---ecC-CCCceEEEEe--C---CEEEEEECCCCeEEEEeCCCCCc--
Confidence                 356677777788999997643111 11   111 1223455543  2   24555555678898888764321  


Q ss_pred             eeeeeccCCCcEEEEEEccCCC
Q 022111          250 EGRVLKDFKTPVWSVSWSLTGN  271 (302)
Q Consensus       250 ~~~~~~~~~~~v~~~~~spdg~  271 (302)
                      ...+..+.....+.+++.|++.
T Consensus       242 ~~~i~~g~~~~p~gi~~~~~~~  263 (267)
T 1npe_A          242 MDTFHPHKQTRLYGITIALSQC  263 (267)
T ss_dssp             EEEECCSSCCCCCCEEEECSCC
T ss_pred             eEEEccccccccceeeecCccC
Confidence            1122111112367788888875

>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A

Probab=97.63  E-value=0.019  Score=47.16  Aligned_cols=188  Identities=8%  Similarity=-0.028  Sum_probs=100.1

Q ss_pred             eEEEEeeCCCCCCEEEEEeCCC--eEEEEEcCCCCceeEEEEecCCCCCeeEEEecCCCCCcEEEEEecCCcEEEEEecC
Q 022111           58 VWQVAWAHPKFGSILASCSYDG--QVIIWKEGNQNDWTQAHTFNDHKSSVNSIAWAPHELGLSLACGSSDGNISVFTATA  135 (302)
Q Consensus        58 v~~v~~~~~~~~~~l~s~s~D~--~i~iwd~~~~~~~~~~~~~~~h~~~i~~l~~~pd~~~~~l~sg~~d~~v~~~~~~~  135 (302)
                      ...+.|+ +  +.++.+.+.++  .|+.+|++++..   ..++... .........++. ..+......++.+.+||..+
T Consensus        45 tqGL~~~-~--~~LyestG~~g~S~v~~vD~~Tgkv---~~~~~l~-~~~FgeGit~~g-~~ly~ltw~~~~v~v~D~~t  116 (262)
T 3nol_A           45 TEGFFYR-N--GYFYESTGLNGRSSIRKVDIESGKT---LQQIELG-KRYFGEGISDWK-DKIVGLTWKNGLGFVWNIRN  116 (262)
T ss_dssp             EEEEEEE-T--TEEEEEEEETTEEEEEEECTTTCCE---EEEEECC-TTCCEEEEEEET-TEEEEEESSSSEEEEEETTT
T ss_pred             cceEEEE-C--CEEEEECCCCCCceEEEEECCCCcE---EEEEecC-CccceeEEEEeC-CEEEEEEeeCCEEEEEECcc
Confidence            4688886 3  67777888766  899999987743   3333322 233332222231 23344444578899998764


Q ss_pred             CCCeeeeeecccCCCCeEEEEeCCCCCCCceeecccCCCceeEEEeeCCCcEEEEEEecCccccccccc-cccCC-Ccee
Q 022111          136 DGGWDTTRIDQAHPVGVTSVSWAPAMAPGALVGLGLLDPVQKLASCGCDNTVKVWKMYNGIWKMDCFPA-LQMHS-DWVR  213 (302)
Q Consensus       136 ~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~D~~v~iwd~~~~~~~~~~~~~-~~~h~-~~v~  213 (302)
                      ....  ..+.... .. ..++                .+++.|+.+..++.|.++|..+...... +.. ..+.. ..++
T Consensus       117 ~~~~--~ti~~~~-eG-~glt----------------~dg~~L~~SdGs~~i~~iDp~T~~v~~~-I~V~~~g~~~~~lN  175 (262)
T 3nol_A          117 LRQV--RSFNYDG-EG-WGLT----------------HNDQYLIMSDGTPVLRFLDPESLTPVRT-ITVTAHGEELPELN  175 (262)
T ss_dssp             CCEE--EEEECSS-CC-CCEE----------------ECSSCEEECCSSSEEEEECTTTCSEEEE-EECEETTEECCCEE
T ss_pred             CcEE--EEEECCC-Cc-eEEe----------------cCCCEEEEECCCCeEEEEcCCCCeEEEE-EEeccCCccccccc
Confidence            3222  1221110 10 1111                1234455544578899999776421111 111 11122 3356


Q ss_pred             EEEeeCCCCCCccEEEEEecCCeEEEEEeccCCcceeeee--ec-------cCCCcEEEEEEccCCCEEEEecCC
Q 022111          214 SVAWAPNLGLPKSTIASASQDGTVVIWTCAKEGEQWEGRV--LK-------DFKTPVWSVSWSLTGNLLAVADAN  279 (302)
Q Consensus       214 ~v~~~p~~~~~~~~l~s~s~D~~i~iwd~~~~~~~~~~~~--~~-------~~~~~v~~~~~spdg~~la~~~~d  279 (302)
                      .+.|. +    +...+..-.+..|.+.|.++..-...-.+  +.       ........|||+|+++.|-+++..
T Consensus       176 ELe~~-~----G~lyan~w~~~~I~vIDp~tG~V~~~Id~~~L~~~~~~~~~~~~vlNGIA~dp~~~~lfVTGK~  245 (262)
T 3nol_A          176 ELEWV-D----GEIFANVWQTNKIVRIDPETGKVTGIIDLNGILAEAGPLPSPIDVLNGIAWDKEHHRLFVTGKL  245 (262)
T ss_dssp             EEEEE-T----TEEEEEETTSSEEEEECTTTCBEEEEEECTTGGGGSCSCCSSCCCEEEEEEETTTTEEEEEETT
T ss_pred             eeEEE-C----CEEEEEEccCCeEEEEECCCCcEEEEEECCcCccccccccCcCCceEEEEEcCCCCEEEEECCC
Confidence            67776 4    35566665678899988865421100011  00       112356899999998888777655

>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1

Probab=97.60  E-value=0.02  Score=46.90  Aligned_cols=229  Identities=12%  Similarity=0.003  Sum_probs=122.2

Q ss_pred             EEEEeeCCCcEEEEeecCCCceE---EEEecCcccCeEEEEeeCCCCCCEEEEEeCCCeEEEEEcCCCCceeEEEEecCC
Q 022111           25 RLATASSDSSIKIIGLSNSASQH---LATLKGHRGPVWQVAWAHPKFGSILASCSYDGQVIIWKEGNQNDWTQAHTFNDH  101 (302)
Q Consensus        25 ~l~s~~~d~~v~lw~~~~~~~~~---~~~~~~h~~~v~~v~~~~~~~~~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~h  101 (302)
                      +|+-+. .+.|+.+++.......   ...+.........++|.+. .+.++++...++.|..+++.....   ...+...
T Consensus         3 ~l~~~~-~~~I~~~~~~g~~~~~~~~~~~~~~~~~~~~gi~~d~~-~~~ly~~d~~~~~I~~~~~~g~~~---~~~~~~~   77 (267)
T 1npe_A            3 HLLFAQ-TGKIERLPLERNTMKKTEAKAFLHIPAKVIIGLAFDCV-DKVVYWTDISEPSIGRASLHGGEP---TTIIRQD   77 (267)
T ss_dssp             EEEEEE-EEEEEEEEESSSCBCGGGCEEEEEEEEEEEEEEEEETT-TTEEEEEETTTTEEEEEESSSCCC---EEEECTT
T ss_pred             EEEEEc-CCeEEEEEecCcccccccceeeecCCCCcEEEEEEecC-CCEEEEEECCCCEEEEEecCCCCc---EEEEECC
Confidence            444443 2467777775432110   1111112234668888753 356666777788999999865421   1122222


Q ss_pred             CCCeeEEEecCCCCCcEEEEEecCCcEEEEEecCCCCeeeeeecccCCCCeEEEEeCCCCCCCceeecccCCCceeEEEe
Q 022111          102 KSSVNSIAWAPHELGLSLACGSSDGNISVFTATADGGWDTTRIDQAHPVGVTSVSWAPAMAPGALVGLGLLDPVQKLASC  181 (302)
Q Consensus       102 ~~~i~~l~~~pd~~~~~l~sg~~d~~v~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~s~  181 (302)
                      ......+++.|+. +.+.++-...+.|.+++...... . .... ........++++|+.             +..+++.
T Consensus        78 ~~~p~~ia~d~~~-~~lyv~d~~~~~I~~~~~~g~~~-~-~~~~-~~~~~P~~i~vd~~~-------------g~lyv~~  140 (267)
T 1npe_A           78 LGSPEGIALDHLG-RTIFWTDSQLDRIEVAKMDGTQR-R-VLFD-TGLVNPRGIVTDPVR-------------GNLYWTD  140 (267)
T ss_dssp             CCCEEEEEEETTT-TEEEEEETTTTEEEEEETTSCSC-E-EEEC-SSCSSEEEEEEETTT-------------TEEEEEE
T ss_pred             CCCccEEEEEecC-CeEEEEECCCCEEEEEEcCCCCE-E-EEEE-CCCCCccEEEEeeCC-------------CEEEEEE
Confidence            3467899998863 44455555567888887642211 1 1111 111234667776642             3444544


Q ss_pred             eC--CCcEEEEEEecCccccccccccccCCCceeEEEeeCCCCCCccEEEEEecCCeEEEEEeccCCcceeeeeeccCCC
Q 022111          182 GC--DNTVKVWKMYNGIWKMDCFPALQMHSDWVRSVAWAPNLGLPKSTIASASQDGTVVIWTCAKEGEQWEGRVLKDFKT  259 (302)
Q Consensus       182 ~~--D~~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~~~~  259 (302)
                      ..  .+.|..+++.....  ..+.  ...-...+.++++|++   +...++-...+.|..+|.....   ...+..... 
T Consensus       141 ~~~~~~~I~~~~~dg~~~--~~~~--~~~~~~P~gia~d~~~---~~lyv~d~~~~~I~~~~~~g~~---~~~~~~~~~-  209 (267)
T 1npe_A          141 WNRDNPKIETSHMDGTNR--RILA--QDNLGLPNGLTFDAFS---SQLCWVDAGTHRAECLNPAQPG---RRKVLEGLQ-  209 (267)
T ss_dssp             CCSSSCEEEEEETTSCCC--EEEE--CTTCSCEEEEEEETTT---TEEEEEETTTTEEEEEETTEEE---EEEEEECCC-
T ss_pred             CCCCCcEEEEEecCCCCc--EEEE--ECCCCCCcEEEEcCCC---CEEEEEECCCCEEEEEecCCCc---eEEEecCCC-
Confidence            33  35677777653211  1111  1122356889999975   3556677778899999986421   112222222 


Q ss_pred             cEEEEEEccCCCEEEEecCC--ceEEeeecC
Q 022111          260 PVWSVSWSLTGNLLAVADAN--NVTLWKEAV  288 (302)
Q Consensus       260 ~v~~~~~spdg~~la~~~~d--~i~~w~~~~  288 (302)
                      ...+++.  ++..|.++...  .|.+++...
T Consensus       210 ~P~gi~~--d~~~lyva~~~~~~v~~~d~~~  238 (267)
T 1npe_A          210 YPFAVTS--YGKNLYYTDWKTNSVIAMDLAI  238 (267)
T ss_dssp             SEEEEEE--ETTEEEEEETTTTEEEEEETTT
T ss_pred             CceEEEE--eCCEEEEEECCCCeEEEEeCCC
Confidence            3456665  45555555433  688887643

>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}

Probab=97.58  E-value=0.02  Score=47.09  Aligned_cols=183  Identities=8%  Similarity=0.015  Sum_probs=103.5

Q ss_pred             eEEEEccCCCEEEEeeCCCcEEEEeecCCCceEEEE-ecCcccCeEEEEeeCCCCCCEEEEEeCCCeEEEEEcCCCCcee
Q 022111           15 HDVAMDFYGKRLATASSDSSIKIIGLSNSASQHLAT-LKGHRGPVWQVAWAHPKFGSILASCSYDGQVIIWKEGNQNDWT   93 (302)
Q Consensus        15 ~~~~~s~~~~~l~s~~~d~~v~lw~~~~~~~~~~~~-~~~h~~~v~~v~~~~~~~~~~l~s~s~D~~i~iwd~~~~~~~~   93 (302)
                      ..+.|+ ++....+.+.++.|+.+|+.+...  +.. +... ..--.+.+..   +++.+..-.++.+.++|.++.   +
T Consensus        58 qGL~~~-~~~Ly~stG~~g~v~~iD~~Tgkv--~~~~l~~~-~FgeGit~~g---~~Ly~ltw~~~~v~V~D~~Tl---~  127 (268)
T 3nok_A           58 QGLVFH-QGHFFESTGHQGTLRQLSLESAQP--VWMERLGN-IFAEGLASDG---ERLYQLTWTEGLLFTWSGMPP---Q  127 (268)
T ss_dssp             EEEEEE-TTEEEEEETTTTEEEECCSSCSSC--SEEEECTT-CCEEEEEECS---SCEEEEESSSCEEEEEETTTT---E
T ss_pred             ceEEEE-CCEEEEEcCCCCEEEEEECCCCcE--EeEECCCC-cceeEEEEeC---CEEEEEEccCCEEEEEECCcC---c
Confidence            567777 466777888999999999876432  222 3321 1122365532   455556667899999998775   3


Q ss_pred             EEEEecCCCCCeeEEEecCCCCCcEEEEEecCCcEEEEEecCCCCeeeeeecccCCC---CeEEEEeCCCCCCCceeecc
Q 022111           94 QAHTFNDHKSSVNSIAWAPHELGLSLACGSSDGNISVFTATADGGWDTTRIDQAHPV---GVTSVSWAPAMAPGALVGLG  170 (302)
Q Consensus        94 ~~~~~~~h~~~i~~l~~~pd~~~~~l~sg~~d~~v~~~~~~~~~~~~~~~~~~~h~~---~v~~~~~~~~~~~~~~~~~~  170 (302)
                      .+.++.. ...-..++  +|  +..|+.+..++.|.++|..+.......... .+..   .++.+.|.            
T Consensus       128 ~~~ti~~-~~eGwGLt--~D--g~~L~vSdGs~~l~~iDp~T~~v~~~I~V~-~~g~~v~~lNeLe~~------------  189 (268)
T 3nok_A          128 RERTTRY-SGEGWGLC--YW--NGKLVRSDGGTMLTFHEPDGFALVGAVQVK-LRGQPVELINELECA------------  189 (268)
T ss_dssp             EEEEEEC-SSCCCCEE--EE--TTEEEEECSSSEEEEECTTTCCEEEEEECE-ETTEECCCEEEEEEE------------
T ss_pred             EEEEEeC-CCceeEEe--cC--CCEEEEECCCCEEEEEcCCCCeEEEEEEeC-CCCcccccccccEEe------------
Confidence            4555543 22223443  45  446666666888888886543222211111 1111   23445554            


Q ss_pred             cCCCceeEEEeeCCCcEEEEEEecCccc----cc-cccc----cccCCCceeEEEeeCCCCCCccEEEEE
Q 022111          171 LLDPVQKLASCGCDNTVKVWKMYNGIWK----MD-CFPA----LQMHSDWVRSVAWAPNLGLPKSTIASA  231 (302)
Q Consensus       171 ~~~~~~~l~s~~~D~~v~iwd~~~~~~~----~~-~~~~----~~~h~~~v~~v~~~p~~~~~~~~l~s~  231 (302)
                         ++..++..-.++.|.+.|..++...    +. +...    ...-.+.-+.|+|+|+.   +..++||
T Consensus       190 ---dG~lyanvw~s~~I~vIDp~TG~V~~~Idl~~L~~~~~~~~~~~~~vlNGIA~dp~~---~rlfVTG  253 (268)
T 3nok_A          190 ---NGVIYANIWHSSDVLEIDPATGTVVGVIDASALTRAVAGQVTNPEAVLNGIAVEPGS---GRIFMTG  253 (268)
T ss_dssp             ---TTEEEEEETTCSEEEEECTTTCBEEEEEECHHHHHHHTTTCCCTTCCEEEEEECTTT---CCEEEEE
T ss_pred             ---CCEEEEEECCCCeEEEEeCCCCcEEEEEECCCCcccccccccCcCCceEEEEEcCCC---CEEEEeC
Confidence               2456666666788888888776321    00 0000    01112456889999986   4677777

>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A

Probab=97.55  E-value=0.034  Score=47.97  Aligned_cols=226  Identities=12%  Similarity=0.062  Sum_probs=113.7

Q ss_pred             CCEEEEeeCCCcEEEEeecCCCceEEEEecCcccCeEEEEeeCCCCCCEEEEEeCCCeEEEEEcCCCCceeEEEEecCCC
Q 022111           23 GKRLATASSDSSIKIIGLSNSASQHLATLKGHRGPVWQVAWAHPKFGSILASCSYDGQVIIWKEGNQNDWTQAHTFNDHK  102 (302)
Q Consensus        23 ~~~l~s~~~d~~v~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~h~  102 (302)
                      +..++.++.++.|..+|..++.  .+................    +..++.++.++.+..+|.+++.   ....+....
T Consensus       103 ~~~v~v~~~~g~l~a~d~~tG~--~~W~~~~~~~~~~~p~~~----~~~v~v~~~~g~l~~~d~~tG~---~~W~~~~~~  173 (376)
T 3q7m_A          103 GGHVYIGSEKAQVYALNTSDGT--VAWQTKVAGEALSRPVVS----DGLVLIHTSNGQLQALNEADGA---VKWTVNLDM  173 (376)
T ss_dssp             TTEEEEEETTSEEEEEETTTCC--EEEEEECSSCCCSCCEEE----TTEEEEECTTSEEEEEETTTCC---EEEEEECCC
T ss_pred             CCEEEEEcCCCEEEEEECCCCC--EEEEEeCCCceEcCCEEE----CCEEEEEcCCCeEEEEECCCCc---EEEEEeCCC
Confidence            4567778889999998876543  333332222111112222    3467778889999999987664   222222211


Q ss_pred             CCe-----eEEEecCCCCCcEEEEEecCCcEEEEEecCCCCeeeeeecccCCCC---eEEEEeCCCCCCCceeecccCCC
Q 022111          103 SSV-----NSIAWAPHELGLSLACGSSDGNISVFTATADGGWDTTRIDQAHPVG---VTSVSWAPAMAPGALVGLGLLDP  174 (302)
Q Consensus       103 ~~i-----~~l~~~pd~~~~~l~sg~~d~~v~~~~~~~~~~~~~~~~~~~h~~~---v~~~~~~~~~~~~~~~~~~~~~~  174 (302)
                      ...     ......    +..+..+..++.+..+|..++..  ...........   +..+.- ...  ...     . .
T Consensus       174 ~~~~~~~~~~~~~~----~~~v~~g~~~g~l~~~d~~tG~~--~w~~~~~~~~~~~~~~~~~~-~~~--~p~-----~-~  238 (376)
T 3q7m_A          174 PSLSLRGESAPTTA----FGAAVVGGDNGRVSAVLMEQGQM--IWQQRISQATGSTEIDRLSD-VDT--TPV-----V-V  238 (376)
T ss_dssp             -----CCCCCCEEE----TTEEEECCTTTEEEEEETTTCCE--EEEEECCC-----------C-CCC--CCE-----E-E
T ss_pred             CceeecCCCCcEEE----CCEEEEEcCCCEEEEEECCCCcE--EEEEecccCCCCcccccccc-cCC--CcE-----E-E
Confidence            110     111121    22577788889999888764321  11111111000   000000 000  000     0 1


Q ss_pred             ceeEEEeeCCCcEEEEEEecCccccccccccccCCCceeEEEeeCCCCCCccEEEEEecCCeEEEEEeccCCcceeeeee
Q 022111          175 VQKLASCGCDNTVKVWKMYNGIWKMDCFPALQMHSDWVRSVAWAPNLGLPKSTIASASQDGTVVIWTCAKEGEQWEGRVL  254 (302)
Q Consensus       175 ~~~l~s~~~D~~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~l~s~s~D~~i~iwd~~~~~~~~~~~~~  254 (302)
                      +..+..++.++.+..+|..++.....    ..  .....++...      +..|..++.++.|..+|..+....|.....
T Consensus       239 ~~~v~~~~~~g~l~~~d~~tG~~~w~----~~--~~~~~~~~~~------~~~l~~~~~~g~l~~~d~~tG~~~w~~~~~  306 (376)
T 3q7m_A          239 NGVVFALAYNGNLTALDLRSGQIMWK----RE--LGSVNDFIVD------GNRIYLVDQNDRVMALTIDGGVTLWTQSDL  306 (376)
T ss_dssp             TTEEEEECTTSCEEEEETTTCCEEEE----EC--CCCEEEEEEE------TTEEEEEETTCCEEEEETTTCCEEEEECTT
T ss_pred             CCEEEEEecCcEEEEEECCCCcEEee----cc--CCCCCCceEE------CCEEEEEcCCCeEEEEECCCCcEEEeeccc
Confidence            24677777889999999877632111    11  1113333332      256778888999999998765444432211


Q ss_pred             ccCCCcEEEEEEccCCCEEEEecCC-ceEEeeecC
Q 022111          255 KDFKTPVWSVSWSLTGNLLAVADAN-NVTLWKEAV  288 (302)
Q Consensus       255 ~~~~~~v~~~~~spdg~~la~~~~d-~i~~w~~~~  288 (302)
                      ..  ..+.+...  .+..|.+++.+ .+..++...
T Consensus       307 ~~--~~~~~~~~--~~~~l~v~~~~g~l~~~d~~t  337 (376)
T 3q7m_A          307 LH--RLLTSPVL--YNGNLVVGDSEGYLHWINVED  337 (376)
T ss_dssp             TT--SCCCCCEE--ETTEEEEECTTSEEEEEETTT
T ss_pred             CC--CcccCCEE--ECCEEEEEeCCCeEEEEECCC
Confidence            11  11111121  24556666666 688888654

>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}

Probab=97.52  E-value=0.027  Score=46.20  Aligned_cols=210  Identities=12%  Similarity=0.155  Sum_probs=120.4

Q ss_pred             EecCcccCeEEEEeeCCCCCCEEEEEeCCCeEEEEEcCCCCceeEEEE--ecCCCCCeeEEEecCCCCCcEEEEEecCCc
Q 022111           50 TLKGHRGPVWQVAWAHPKFGSILASCSYDGQVIIWKEGNQNDWTQAHT--FNDHKSSVNSIAWAPHELGLSLACGSSDGN  127 (302)
Q Consensus        50 ~~~~h~~~v~~v~~~~~~~~~~l~s~s~D~~i~iwd~~~~~~~~~~~~--~~~h~~~i~~l~~~pd~~~~~l~sg~~d~~  127 (302)
                      .+.+-...+..++|.++ .+.+.+....++.|...|.. +.   ....  +.+. .-.-.+++.++  +.++++.-.++.
T Consensus        21 ~l~g~~~~lSGla~~~~-~~~L~aV~d~~~~I~~ld~~-g~---v~~~i~l~g~-~D~EGIa~~~~--g~~~vs~E~~~~   92 (255)
T 3qqz_A           21 EIAGITNNISSLTWSAQ-SNTLFSTINKPAAIVEMTTN-GD---LIRTIPLDFV-KDLETIEYIGD--NQFVISDERDYA   92 (255)
T ss_dssp             ECTTCCSCEEEEEEETT-TTEEEEEEETTEEEEEEETT-CC---EEEEEECSSC-SSEEEEEECST--TEEEEEETTTTE
T ss_pred             ECCCcccCcceeEEeCC-CCEEEEEECCCCeEEEEeCC-CC---EEEEEecCCC-CChHHeEEeCC--CEEEEEECCCCc
Confidence            45565567999999864 34555556678888888875 32   2233  3332 44677888765  555566556678


Q ss_pred             EEEEEecCCCCee-eeee--c---ccCCCCeEEEEeCCCCCCCceeecccCCCceeEEEeeCCCcEEEEEEecC--cccc
Q 022111          128 ISVFTATADGGWD-TTRI--D---QAHPVGVTSVSWAPAMAPGALVGLGLLDPVQKLASCGCDNTVKVWKMYNG--IWKM  199 (302)
Q Consensus       128 v~~~~~~~~~~~~-~~~~--~---~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~D~~v~iwd~~~~--~~~~  199 (302)
                      +.++++...+... ....  .   .........++|+|..              +.|.++.+.....||.....  ...+
T Consensus        93 l~~~~v~~~~~i~~~~~~~~~~~~~~~N~g~EGLA~d~~~--------------~~L~va~E~~p~~i~~~~g~~~~~~l  158 (255)
T 3qqz_A           93 IYVISLTPNSEVKILKKIKIPLQESPTNCGFEGLAYSRQD--------------HTFWFFKEKNPIEVYKVNGLLSSNEL  158 (255)
T ss_dssp             EEEEEECTTCCEEEEEEEECCCSSCCCSSCCEEEEEETTT--------------TEEEEEEESSSEEEEEEESTTCSSCC
T ss_pred             EEEEEcCCCCeeeeeeeeccccccccccCCcceEEEeCCC--------------CEEEEEECcCCceEEEEcccccCCce
Confidence            8888876554311 1111  1   1223456788888753              34444444445566665421  0011


Q ss_pred             ccccc--c--ccCCCceeEEEeeCCCCCCccEEEEEecCCeEEEEEeccCCcceeeeeeccCC------CcEEEEEEccC
Q 022111          200 DCFPA--L--QMHSDWVRSVAWAPNLGLPKSTIASASQDGTVVIWTCAKEGEQWEGRVLKDFK------TPVWSVSWSLT  269 (302)
Q Consensus       200 ~~~~~--~--~~h~~~v~~v~~~p~~~~~~~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~~~------~~v~~~~~spd  269 (302)
                      .....  +  ..+.....+++++|..   +..++.....+.|-++|.+... .....+..+..      ...-.|+|.|+
T Consensus       159 ~i~~~~~~~~~~~~~d~S~l~~dp~t---g~lliLS~~s~~L~~~d~~g~~-~~~~~L~~g~~~l~~~~~qpEGia~d~~  234 (255)
T 3qqz_A          159 HISKDKALQRQFTLDDVSGAEFNQQK---NTLLVLSHESRALQEVTLVGEV-IGEMSLTKGSRGLSHNIKQAEGVAMDAS  234 (255)
T ss_dssp             EEEECHHHHHTCCSSCCCEEEEETTT---TEEEEEETTTTEEEEECTTCCE-EEEEECSTTGGGCSSCCCSEEEEEECTT
T ss_pred             eeecchhhccccccCCceeEEEcCCC---CeEEEEECCCCeEEEEcCCCCE-EEEEEcCCccCCcccccCCCCeeEECCC
Confidence            11100  0  1123346899999974   5777788888899999876431 11111212211      24678999999


Q ss_pred             CCEEEEecCCceEEee
Q 022111          270 GNLLAVADANNVTLWK  285 (302)
Q Consensus       270 g~~la~~~~d~i~~w~  285 (302)
                      |+++++.-.|-+..+.
T Consensus       235 G~lyIvsE~n~~y~f~  250 (255)
T 3qqz_A          235 GNIYIVSEPNRFYRFT  250 (255)
T ss_dssp             CCEEEEETTTEEEEEE
T ss_pred             CCEEEEcCCceEEEEE
Confidence            9988886555444443

>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1

Probab=97.45  E-value=0.0092  Score=56.37  Aligned_cols=79  Identities=11%  Similarity=0.170  Sum_probs=45.8

Q ss_pred             CcEEEEEEecCccccccccccccCCCceeEEEeeCCCCCCccEEEEEecCCeEEEEEeccCCcceeeeeeccCCCcEEEE
Q 022111          185 NTVKVWKMYNGIWKMDCFPALQMHSDWVRSVAWAPNLGLPKSTIASASQDGTVVIWTCAKEGEQWEGRVLKDFKTPVWSV  264 (302)
Q Consensus       185 ~~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~  264 (302)
                      +.|..||+.+++..-..    . +...+....+.+++    ..++.++.|+.+++||.++.+..|...+  .......-+
T Consensus       457 g~l~A~D~~tG~~~W~~----~-~~~~~~~g~~~~~g----~~v~~g~~dg~l~a~D~~tG~~lw~~~~--~~~~~~~p~  525 (677)
T 1kb0_A          457 GRLLAWDPVAQKAAWSV----E-HVSPWNGGTLTTAG----NVVFQGTADGRLVAYHAATGEKLWEAPT--GTGVVAAPS  525 (677)
T ss_dssp             EEEEEEETTTTEEEEEE----E-ESSSCCCCEEEETT----TEEEEECTTSEEEEEETTTCCEEEEEEC--SSCCCSCCE
T ss_pred             cEEEEEeCCCCcEEeec----C-CCCCCcCcceEeCC----CEEEEECCCCcEEEEECCCCceeeeeeC--CCCcccCCE
Confidence            67889998876421111    1 12223333444443    5678889999999999987654443222  222222345


Q ss_pred             EEccCCCEEE
Q 022111          265 SWSLTGNLLA  274 (302)
Q Consensus       265 ~~spdg~~la  274 (302)
                      .|+++|++++
T Consensus       526 ~y~~~G~~~v  535 (677)
T 1kb0_A          526 TYMVDGRQYV  535 (677)
T ss_dssp             EEEETTEEEE
T ss_pred             EEEeCCEEEE
Confidence            6778886553

>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A

Probab=97.40  E-value=0.053  Score=46.71  Aligned_cols=238  Identities=12%  Similarity=0.090  Sum_probs=114.8

Q ss_pred             CCEEEEeeCCCcEEEEeecCCCceEEEEecCc-------ccCe-EEEEeeCCCCCCEEEEEeCCCeEEEEEcCCCCceeE
Q 022111           23 GKRLATASSDSSIKIIGLSNSASQHLATLKGH-------RGPV-WQVAWAHPKFGSILASCSYDGQVIIWKEGNQNDWTQ   94 (302)
Q Consensus        23 ~~~l~s~~~d~~v~lw~~~~~~~~~~~~~~~h-------~~~v-~~v~~~~~~~~~~l~s~s~D~~i~iwd~~~~~~~~~   94 (302)
                      +..+..++.++.|..+|..++...-...+...       ...+ ..+...    +..|+.++.++.|..+|.+++.   .
T Consensus        53 ~~~v~~~~~~g~v~a~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~----~~~v~v~~~~g~l~a~d~~tG~---~  125 (376)
T 3q7m_A           53 DNVVYAADRAGLVKALNADDGKEIWSVSLAEKDGWFSKEPALLSGGVTVS----GGHVYIGSEKAQVYALNTSDGT---V  125 (376)
T ss_dssp             TTEEEEECTTSEEEEEETTTCCEEEEEECCC---CCSCCCCCEEEEEEEE----TTEEEEEETTSEEEEEETTTCC---E
T ss_pred             CCEEEEEcCCCeEEEEEccCCceeeeecCccccccccccCcccccCceEe----CCEEEEEcCCCEEEEEECCCCC---E
Confidence            45677788888899988754432111222111       1223 223332    4567778899999999987764   2


Q ss_pred             EEEecCCCCCeeEEEecCCCCCcEEEEEecCCcEEEEEecCCCCeeeeeecccCCCCeEEEEeCCCCCCCceeecccCCC
Q 022111           95 AHTFNDHKSSVNSIAWAPHELGLSLACGSSDGNISVFTATADGGWDTTRIDQAHPVGVTSVSWAPAMAPGALVGLGLLDP  174 (302)
Q Consensus        95 ~~~~~~h~~~i~~l~~~pd~~~~~l~sg~~d~~v~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~  174 (302)
                      ...+.............    +..++.++.++.+..+|..++..  .......  ..+....  ...  ...+     . 
T Consensus       126 ~W~~~~~~~~~~~p~~~----~~~v~v~~~~g~l~~~d~~tG~~--~W~~~~~--~~~~~~~--~~~--~~~~-----~-  187 (376)
T 3q7m_A          126 AWQTKVAGEALSRPVVS----DGLVLIHTSNGQLQALNEADGAV--KWTVNLD--MPSLSLR--GES--APTT-----A-  187 (376)
T ss_dssp             EEEEECSSCCCSCCEEE----TTEEEEECTTSEEEEEETTTCCE--EEEEECC--C-----C--CCC--CCEE-----E-
T ss_pred             EEEEeCCCceEcCCEEE----CCEEEEEcCCCeEEEEECCCCcE--EEEEeCC--CCceeec--CCC--CcEE-----E-
Confidence            22322222111111222    22677888899999998764432  1111101  1110000  000  0000     1 


Q ss_pred             ceeEEEeeCCCcEEEEEEecCccccccc-cccccCC--CceeEEEeeCCCCCCccEEEEEecCCeEEEEEeccCCcceee
Q 022111          175 VQKLASCGCDNTVKVWKMYNGIWKMDCF-PALQMHS--DWVRSVAWAPNLGLPKSTIASASQDGTVVIWTCAKEGEQWEG  251 (302)
Q Consensus       175 ~~~l~s~~~D~~v~iwd~~~~~~~~~~~-~~~~~h~--~~v~~v~~~p~~~~~~~~l~s~s~D~~i~iwd~~~~~~~~~~  251 (302)
                      +..++.++.++.+..+|..++....... ....+..  ..+..+.-.|-  ..+..+..++.++.+..+|.++....|..
T Consensus       188 ~~~v~~g~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~p~--~~~~~v~~~~~~g~l~~~d~~tG~~~w~~  265 (376)
T 3q7m_A          188 FGAAVVGGDNGRVSAVLMEQGQMIWQQRISQATGSTEIDRLSDVDTTPV--VVNGVVFALAYNGNLTALDLRSGQIMWKR  265 (376)
T ss_dssp             TTEEEECCTTTEEEEEETTTCCEEEEEECCC-----------CCCCCCE--EETTEEEEECTTSCEEEEETTTCCEEEEE
T ss_pred             CCEEEEEcCCCEEEEEECCCCcEEEEEecccCCCCcccccccccCCCcE--EECCEEEEEecCcEEEEEECCCCcEEeec
Confidence            2457777888999999987663211100 0000000  00000111121  01256777888999999998765444432


Q ss_pred             eeeccCCCcEEEEEEccCCCEEEEecCC-ceEEeeecCCce-EEE
Q 022111          252 RVLKDFKTPVWSVSWSLTGNLLAVADAN-NVTLWKEAVDGE-WQQ  294 (302)
Q Consensus       252 ~~~~~~~~~v~~~~~spdg~~la~~~~d-~i~~w~~~~~~~-~~~  294 (302)
                      .    . .....+..  ++..|.+++.+ .+..++...... |..
T Consensus       266 ~----~-~~~~~~~~--~~~~l~~~~~~g~l~~~d~~tG~~~w~~  303 (376)
T 3q7m_A          266 E----L-GSVNDFIV--DGNRIYLVDQNDRVMALTIDGGVTLWTQ  303 (376)
T ss_dssp             C----C-CCEEEEEE--ETTEEEEEETTCCEEEEETTTCCEEEEE
T ss_pred             c----C-CCCCCceE--ECCEEEEEcCCCeEEEEECCCCcEEEee
Confidence            2    1 12333333  34455455445 788888643332 543

>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}

Probab=97.38  E-value=0.0058  Score=51.53  Aligned_cols=221  Identities=14%  Similarity=0.051  Sum_probs=110.3

Q ss_pred             ceeEEEEccCCCEEEEeeCCCcEEEEeecCCCceEEEEecCcccCeEEEEeeCCCCCCEEEEEeCCCeEEEEEcCCCCce
Q 022111           13 TVHDVAMDFYGKRLATASSDSSIKIIGLSNSASQHLATLKGHRGPVWQVAWAHPKFGSILASCSYDGQVIIWKEGNQNDW   92 (302)
Q Consensus        13 ~v~~~~~s~~~~~l~s~~~d~~v~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~s~D~~i~iwd~~~~~~~   92 (302)
                      .+.++....++. |..++.+  +..+|..   ++.+..+..+........+.    +..|..++.++.+..+|.. +.  
T Consensus        61 ~~~~~~~~~~g~-l~v~t~~--l~~~d~~---g~~~~~~~~~~~~~~~~~~~----~~~l~v~t~~~~l~~~d~~-g~--  127 (330)
T 3hxj_A           61 IECRPSIGKDGT-IYFGSDK--VYAINPD---GTEKWRFDTKKAIVSDFTIF----EDILYVTSMDGHLYAINTD-GT--  127 (330)
T ss_dssp             EEECCEETTTTE-ECCSSCE--EEEECCC---GGGGGGSCC-----CCEEEE----TTEEEEECTTSEEEEECTT-SC--
T ss_pred             cccceEEecCCc-EEEecCc--EEEECCC---CcEEEEEECCCCcccCceEE----CCEEEEEecCCEEEEEcCC-CC--
Confidence            445666666664 4445444  7777642   12221222122222223332    2356677788999999876 32  


Q ss_pred             eEEEEecCCCCCeeEEEecCCCCCcEEEEEecCCcEEEEEecCCCCeeeeeecccCCCCeEEEEeCCCCCCCceeecccC
Q 022111           93 TQAHTFNDHKSSVNSIAWAPHELGLSLACGSSDGNISVFTATADGGWDTTRIDQAHPVGVTSVSWAPAMAPGALVGLGLL  172 (302)
Q Consensus        93 ~~~~~~~~h~~~i~~l~~~pd~~~~~l~sg~~d~~v~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~  172 (302)
                       ....+......+.++...++  +. +..++.++.+..++.. . .. ..... .....+.++...+             
T Consensus       128 -~~~~~~~~~~~~~~~~~~~~--g~-l~vgt~~~~l~~~d~~-g-~~-~~~~~-~~~~~~~~~~~d~-------------  186 (330)
T 3hxj_A          128 -EKWRFKTKKAIYATPIVSED--GT-IYVGSNDNYLYAINPD-G-TE-KWRFK-TNDAITSAASIGK-------------  186 (330)
T ss_dssp             -EEEEEECSSCCCSCCEECTT--SC-EEEECTTSEEEEECTT-S-CE-EEEEE-CSSCCCSCCEECT-------------
T ss_pred             -EEEEEcCCCceeeeeEEcCC--CE-EEEEcCCCEEEEECCC-C-CE-eEEEe-cCCCceeeeEEcC-------------
Confidence             23333334445566666554  43 6667778888888765 2 21 11111 1111222222222             


Q ss_pred             CCceeEEEeeCCCcEEEEEEecCccccccccccccCCCceeEEEeeCCCCCCccEEEEEecCCeEEEEEeccCCcceeee
Q 022111          173 DPVQKLASCGCDNTVKVWKMYNGIWKMDCFPALQMHSDWVRSVAWAPNLGLPKSTIASASQDGTVVIWTCAKEGEQWEGR  252 (302)
Q Consensus       173 ~~~~~l~s~~~D~~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~l~s~s~D~~i~iwd~~~~~~~~~~~  252 (302)
                       + ..|..++  +.|..+| .++..    ...+......+.++...+++     .|..++.++.|..+|... ...+...
T Consensus       187 -~-g~l~v~t--~~l~~~d-~~g~~----~~~~~~~~~~~~~~~~~~~g-----~l~v~t~~~gl~~~~~~g-~~~~~~~  251 (330)
T 3hxj_A          187 -D-GTIYFGS--DKVYAIN-PDGTE----KWNFYAGYWTVTRPAISEDG-----TIYVTSLDGHLYAINPDG-TEKWRFK  251 (330)
T ss_dssp             -T-CCEEEES--SSEEEEC-TTSCE----EEEECCSSCCCSCCEECTTS-----CEEEEETTTEEEEECTTS-CEEEEEE
T ss_pred             -C-CEEEEEe--CEEEEEC-CCCcE----EEEEccCCcceeceEECCCC-----eEEEEcCCCeEEEECCCC-CEeEEee
Confidence             2 2344444  7788888 54421    11222233557777777663     466677788888886422 2222211


Q ss_pred             eeccCCCcEEEEEEccCCCEEEEecCC-ceEEeee
Q 022111          253 VLKDFKTPVWSVSWSLTGNLLAVADAN-NVTLWKE  286 (302)
Q Consensus       253 ~~~~~~~~v~~~~~spdg~~la~~~~d-~i~~w~~  286 (302)
                         .....+.++...++|++.+ ++.+ .+..++.
T Consensus       252 ---~~~~~~~~~~~~~~g~l~v-~t~~ggl~~~d~  282 (330)
T 3hxj_A          252 ---TGKRIESSPVIGNTDTIYF-GSYDGHLYAINP  282 (330)
T ss_dssp             ---CSSCCCSCCEECTTSCEEE-ECTTCEEEEECT
T ss_pred             ---CCCCccccceEcCCCeEEE-ecCCCCEEEECC
Confidence               1111223345555666554 4445 7888874

>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}

Probab=97.38  E-value=0.04  Score=44.79  Aligned_cols=190  Identities=9%  Similarity=0.070  Sum_probs=103.8

Q ss_pred             cccc--ceeEEEEccCCCEEEEeeCCC--cEEEEeecCCCceEEEEecCcccC-eEEEEeeCCCCCCEEEEEeCCCeEEE
Q 022111            9 GHED--TVHDVAMDFYGKRLATASSDS--SIKIIGLSNSASQHLATLKGHRGP-VWQVAWAHPKFGSILASCSYDGQVII   83 (302)
Q Consensus         9 ~h~~--~v~~~~~s~~~~~l~s~~~d~--~v~lw~~~~~~~~~~~~~~~h~~~-v~~v~~~~~~~~~~l~s~s~D~~i~i   83 (302)
                      .|..  -...+.|+. +....|.+.+|  .|+.+|+.++.  .+..+.-.... --.+.+..   +++.+..-.++.+.+
T Consensus        16 phd~~~ftqGL~~~~-~~LyestG~~g~S~v~~vD~~tgk--v~~~~~l~~~~fgeGi~~~~---~~ly~ltw~~~~v~v   89 (243)
T 3mbr_X           16 PHDTTAFTEGLFYLR-GHLYESTGETGRSSVRKVDLETGR--ILQRAEVPPPYFGAGIVAWR---DRLIQLTWRNHEGFV   89 (243)
T ss_dssp             ECCTTCCEEEEEEET-TEEEEEECCTTSCEEEEEETTTCC--EEEEEECCTTCCEEEEEEET---TEEEEEESSSSEEEE
T ss_pred             CCCCccccccEEEEC-CEEEEECCCCCCceEEEEECCCCC--EEEEEeCCCCcceeEEEEeC---CEEEEEEeeCCEEEE
Confidence            4543  345688886 66677777764  89999987643  33333221111 12355432   455556667899999


Q ss_pred             EEcCCCCceeEEEEecCCCCCeeEEEecCCCCCcEEEEEecCCcEEEEEecCCCCeeeeeecccCC---CCeEEEEeCCC
Q 022111           84 WKEGNQNDWTQAHTFNDHKSSVNSIAWAPHELGLSLACGSSDGNISVFTATADGGWDTTRIDQAHP---VGVTSVSWAPA  160 (302)
Q Consensus        84 wd~~~~~~~~~~~~~~~h~~~i~~l~~~pd~~~~~l~sg~~d~~v~~~~~~~~~~~~~~~~~~~h~---~~v~~~~~~~~  160 (302)
                      +|.++.   ..+.++... ..-..++  ++  +..|..+..++.|.++|..+.......... .+.   ..++.+.|.  
T Consensus        90 ~D~~tl---~~~~ti~~~-~~Gwglt--~d--g~~L~vSdgs~~l~~iDp~t~~~~~~I~V~-~~g~~~~~lNeLe~~--  158 (243)
T 3mbr_X           90 YDLATL---TPRARFRYP-GEGWALT--SD--DSHLYMSDGTAVIRKLDPDTLQQVGSIKVT-AGGRPLDNLNELEWV--  158 (243)
T ss_dssp             EETTTT---EEEEEEECS-SCCCEEE--EC--SSCEEEECSSSEEEEECTTTCCEEEEEECE-ETTEECCCEEEEEEE--
T ss_pred             EECCcC---cEEEEEeCC-CCceEEe--eC--CCEEEEECCCCeEEEEeCCCCeEEEEEEEc-cCCcccccceeeEEe--
Confidence            998765   345555432 2223443  45  334555566888888886543222111111 111   123444443  


Q ss_pred             CCCCceeecccCCCceeEEEeeCCCcEEEEEEecCccc----cc-ccccc----ccCCCceeEEEeeCCCCCCccEEEEE
Q 022111          161 MAPGALVGLGLLDPVQKLASCGCDNTVKVWKMYNGIWK----MD-CFPAL----QMHSDWVRSVAWAPNLGLPKSTIASA  231 (302)
Q Consensus       161 ~~~~~~~~~~~~~~~~~l~s~~~D~~v~iwd~~~~~~~----~~-~~~~~----~~h~~~v~~v~~~p~~~~~~~~l~s~  231 (302)
                                   +++.++..-.+..|.+.|..++...    +. +....    ..-.+.-+.|+|+|+.   +..++||
T Consensus       159 -------------~G~lyanvw~s~~I~vIDp~tG~V~~~idl~~l~~~~~~~~~~~~~vlNGIA~d~~~---~~lfVTG  222 (243)
T 3mbr_X          159 -------------NGELLANVWLTSRIARIDPASGKVVAWIDLQALVPDADALTDSTNDVLNGIAFDAEH---DRLFVTG  222 (243)
T ss_dssp             -------------TTEEEEEETTTTEEEEECTTTCBEEEEEECGGGSTTTTSCCCTTSSCEEEEEEETTT---TEEEEEE
T ss_pred             -------------CCEEEEEECCCCeEEEEECCCCCEEEEEECCcCccccccccCCcCCceEEEEEcCCC---CEEEEEC
Confidence                         2456666656778888888776321    00 11100    0112356889999985   3667776

>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3

Probab=97.35  E-value=0.051  Score=45.58  Aligned_cols=232  Identities=12%  Similarity=-0.034  Sum_probs=118.2

Q ss_pred             cceeEEEEccCCCEEEEeeCCCcEEEEeecCCCceEEEEecCcccCeEEEEeeCCCCCCEEEEEeCC-C-eEEEEEcCCC
Q 022111           12 DTVHDVAMDFYGKRLATASSDSSIKIIGLSNSASQHLATLKGHRGPVWQVAWAHPKFGSILASCSYD-G-QVIIWKEGNQ   89 (302)
Q Consensus        12 ~~v~~~~~s~~~~~l~s~~~d~~v~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~s~D-~-~i~iwd~~~~   89 (302)
                      .....++++++++.+++-..++.|..++.... ......+   ......+++.++  ++++++.... + .|..+|..++
T Consensus        32 ~~pegia~~~~g~lyv~d~~~~~I~~~d~~g~-~~~~~~~---~~~p~gia~~~d--G~l~vad~~~~~~~v~~~d~~~g  105 (306)
T 2p4o_A           32 TFLENLASAPDGTIFVTNHEVGEIVSITPDGN-QQIHATV---EGKVSGLAFTSN--GDLVATGWNADSIPVVSLVKSDG  105 (306)
T ss_dssp             CCEEEEEECTTSCEEEEETTTTEEEEECTTCC-EEEEEEC---SSEEEEEEECTT--SCEEEEEECTTSCEEEEEECTTS
T ss_pred             CCcceEEECCCCCEEEEeCCCCeEEEECCCCc-eEEEEeC---CCCceeEEEcCC--CcEEEEeccCCcceEEEEcCCCC
Confidence            34567899999987777667888888886542 1122222   234678888653  6766655433 2 3555565544


Q ss_pred             CceeEEEEecCCCCCeeEEEecCCCCCcEEEEEecCCcEEEEEecCCCCeeeeeecc--------cCCCCeEEEEeCCCC
Q 022111           90 NDWTQAHTFNDHKSSVNSIAWAPHELGLSLACGSSDGNISVFTATADGGWDTTRIDQ--------AHPVGVTSVSWAPAM  161 (302)
Q Consensus        90 ~~~~~~~~~~~h~~~i~~l~~~pd~~~~~l~sg~~d~~v~~~~~~~~~~~~~~~~~~--------~h~~~v~~~~~~~~~  161 (302)
                      . ...+..+. .......++..++  +..+++-...+.|..+|.... .........        ........+  +|+ 
T Consensus       106 ~-~~~~~~~~-~~~~~~g~~~~~~--~~~~v~d~~~g~i~~~d~~~~-~~~v~~~~~~~~~~~~~~~~~~pngi--s~d-  177 (306)
T 2p4o_A          106 T-VETLLTLP-DAIFLNGITPLSD--TQYLTADSYRGAIWLIDVVQP-SGSIWLEHPMLARSNSESVFPAANGL--KRF-  177 (306)
T ss_dssp             C-EEEEEECT-TCSCEEEEEESSS--SEEEEEETTTTEEEEEETTTT-EEEEEEECGGGSCSSTTCCSCSEEEE--EEE-
T ss_pred             e-EEEEEeCC-CccccCcccccCC--CcEEEEECCCCeEEEEeCCCC-cEeEEEECCccccccccCCCCcCCCc--CcC-
Confidence            2 22222222 1222344444333  334444445777777664321 001110000        000011222  221 


Q ss_pred             CCCceeecccCCCceeEEEeeCCCcEEEEEEec-CccccccccccccCCCceeEEEeeCCCCCCccEEEEEecCCeEEEE
Q 022111          162 APGALVGLGLLDPVQKLASCGCDNTVKVWKMYN-GIWKMDCFPALQMHSDWVRSVAWAPNLGLPKSTIASASQDGTVVIW  240 (302)
Q Consensus       162 ~~~~~~~~~~~~~~~~l~s~~~D~~v~iwd~~~-~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~l~s~s~D~~i~iw  240 (302)
                                  .+.++++-...+.|.++|+.. +..  .....+.. ......+++.+++    +..++....+.|.++
T Consensus       178 ------------g~~lyv~d~~~~~I~~~~~~~~g~~--~~~~~~~~-~~~P~gi~vd~dG----~l~va~~~~~~V~~~  238 (306)
T 2p4o_A          178 ------------GNFLYVSNTEKMLLLRIPVDSTDKP--GEPEIFVE-QTNIDDFAFDVEG----NLYGATHIYNSVVRI  238 (306)
T ss_dssp             ------------TTEEEEEETTTTEEEEEEBCTTSCB--CCCEEEEE-SCCCSSEEEBTTC----CEEEECBTTCCEEEE
T ss_pred             ------------CCEEEEEeCCCCEEEEEEeCCCCCC--CccEEEec-cCCCCCeEECCCC----CEEEEeCCCCeEEEE
Confidence                        124566667788899999864 211  11111110 1234567888875    567777677889998


Q ss_pred             EeccCCcceeeeeeccCCCcEEEEEEc---cCCCEEEEecC
Q 022111          241 TCAKEGEQWEGRVLKDFKTPVWSVSWS---LTGNLLAVADA  278 (302)
Q Consensus       241 d~~~~~~~~~~~~~~~~~~~v~~~~~s---pdg~~la~~~~  278 (302)
                      |...  ................+++|.   ||++.|.++..
T Consensus       239 ~~~G--~~~~~~~~~~~~~~p~~~a~~g~~~d~~~LyVt~~  277 (306)
T 2p4o_A          239 APDR--STTIIAQAEQGVIGSTAVAFGQTEGDCTAIYVVTN  277 (306)
T ss_dssp             CTTC--CEEEEECGGGTCTTEEEEEECCSTTTTTEEEEEEC
T ss_pred             CCCC--CEEEEeecccccCCceEEEEecccCCCCEEEEECC
Confidence            8642  111000011112457899999   89877766544

>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*

Probab=97.31  E-value=0.052  Score=44.81  Aligned_cols=193  Identities=7%  Similarity=-0.036  Sum_probs=105.3

Q ss_pred             eEEEEeeCCCCCCEEEEEeC--CCeEEEEEcCCCCceeEEEEecCCC-CCeeEEEecCCCCCcEEEEEecCCcEEEEEec
Q 022111           58 VWQVAWAHPKFGSILASCSY--DGQVIIWKEGNQNDWTQAHTFNDHK-SSVNSIAWAPHELGLSLACGSSDGNISVFTAT  134 (302)
Q Consensus        58 v~~v~~~~~~~~~~l~s~s~--D~~i~iwd~~~~~~~~~~~~~~~h~-~~i~~l~~~pd~~~~~l~sg~~d~~v~~~~~~  134 (302)
                      ...+.|+++  +.++++.+.  +++|++.|+.++.   .+.++.... .....+++..   +...++.-.++.+.++|..
T Consensus        23 ~~Gl~~~~d--g~Lyvstg~~~~s~v~~iD~~tg~---v~~~i~l~~~~fgeGi~~~g---~~lyv~t~~~~~v~viD~~   94 (266)
T 2iwa_A           23 TQGLVYAEN--DTLFESTGLYGRSSVRQVALQTGK---VENIHKMDDSYFGEGLTLLN---EKLYQVVWLKNIGFIYDRR   94 (266)
T ss_dssp             EEEEEECST--TEEEEEECSTTTCEEEEEETTTCC---EEEEEECCTTCCEEEEEEET---TEEEEEETTCSEEEEEETT
T ss_pred             cccEEEeCC--CeEEEECCCCCCCEEEEEECCCCC---EEEEEecCCCcceEEEEEeC---CEEEEEEecCCEEEEEECC
Confidence            468999753  566555553  6899999998764   233332111 1223455542   2345555567899999876


Q ss_pred             CCCCeeeeeecccCCCCeEEEEeCCCCCCCceeecccCCCceeEEEeeCCCcEEEEEEecCccccccccccccCC---Cc
Q 022111          135 ADGGWDTTRIDQAHPVGVTSVSWAPAMAPGALVGLGLLDPVQKLASCGCDNTVKVWKMYNGIWKMDCFPALQMHS---DW  211 (302)
Q Consensus       135 ~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~D~~v~iwd~~~~~~~~~~~~~~~~h~---~~  211 (302)
                      +..  ....+..+.+.. ..+.  +              +++.++.+..++.|.++|..+.... ..+. ...+.   ..
T Consensus        95 t~~--v~~~i~~g~~~g-~glt--~--------------Dg~~l~vs~gs~~l~viD~~t~~v~-~~I~-Vg~~~~p~~~  153 (266)
T 2iwa_A           95 TLS--NIKNFTHQMKDG-WGLA--T--------------DGKILYGSDGTSILYEIDPHTFKLI-KKHN-VKYNGHRVIR  153 (266)
T ss_dssp             TTE--EEEEEECCSSSC-CEEE--E--------------CSSSEEEECSSSEEEEECTTTCCEE-EEEE-CEETTEECCC
T ss_pred             CCc--EEEEEECCCCCe-EEEE--E--------------CCCEEEEECCCCeEEEEECCCCcEE-EEEE-ECCCCccccc
Confidence            432  112222110111 1122  1              2344445556889999998664211 1111 11111   23


Q ss_pred             eeEEEeeCCCCCCccEEEEEecCCeEEEEEeccCCcceeeee-ecc-----------CCCcEEEEEEccCCCEEEEecCC
Q 022111          212 VRSVAWAPNLGLPKSTIASASQDGTVVIWTCAKEGEQWEGRV-LKD-----------FKTPVWSVSWSLTGNLLAVADAN  279 (302)
Q Consensus       212 v~~v~~~p~~~~~~~~l~s~s~D~~i~iwd~~~~~~~~~~~~-~~~-----------~~~~v~~~~~spdg~~la~~~~d  279 (302)
                      .+.+.|. ++    ...+....++.|.+-|..+..-.  ..+ +.+           .......++|+|+++.|.+++..
T Consensus       154 ~nele~~-dg----~lyvn~~~~~~V~vID~~tg~V~--~~I~~~g~~~~~~~~~~~~~~v~nGIa~~~~~~~lfVTgk~  226 (266)
T 2iwa_A          154 LNELEYI-NG----EVWANIWQTDCIARISAKDGTLL--GWILLPNLRKKLIDEGFRDIDVLNGIAWDQENKRIFVTGKL  226 (266)
T ss_dssp             EEEEEEE-TT----EEEEEETTSSEEEEEETTTCCEE--EEEECHHHHHHHHHTTCTTCCCEEEEEEETTTTEEEEEETT
T ss_pred             ceeEEEE-CC----EEEEecCCCCeEEEEECCCCcEE--EEEECCCcccccccccccccCceEEEEEcCCCCEEEEECCC
Confidence            6678887 53    55666667889999998764311  111 111           11356899999999877666554


Q ss_pred             --ceEEeee
Q 022111          280 --NVTLWKE  286 (302)
Q Consensus       280 --~i~~w~~  286 (302)
                        ++..-+.
T Consensus       227 ~~~v~~i~l  235 (266)
T 2iwa_A          227 WPKLFEIKL  235 (266)
T ss_dssp             CSEEEEEEE
T ss_pred             CCeEEEEEE
Confidence              5666554

>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*

Probab=97.27  E-value=0.14  Score=49.03  Aligned_cols=239  Identities=12%  Similarity=0.084  Sum_probs=131.7

Q ss_pred             ccceeEEEEccCCCEEEEeeCCCcEEEEeecCCCceEEEEec------CcccCeEEEEeeCCCCCCEEEEEeCCCeEEEE
Q 022111           11 EDTVHDVAMDFYGKRLATASSDSSIKIIGLSNSASQHLATLK------GHRGPVWQVAWAHPKFGSILASCSYDGQVIIW   84 (302)
Q Consensus        11 ~~~v~~~~~s~~~~~l~s~~~d~~v~lw~~~~~~~~~~~~~~------~h~~~v~~v~~~~~~~~~~l~s~s~D~~i~iw   84 (302)
                      ...|.++..+.+|...+ |..++-+..|+...........-.      .....|.++...+  ++++|-.|..++-+..+
T Consensus       356 ~~~V~~i~~d~~g~lWi-Gt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~--~g~~lWigt~~~Gl~~~  432 (795)
T 4a2l_A          356 DNVVSCIVEDKDKNLWI-GTNDGGLNLYNPITQRFTSYTLQEDESARGIGSNNIKAVYVDE--KKSLVYIGTHAGGLSIL  432 (795)
T ss_dssp             CSSEEEEEECTTSCEEE-EESSSCEEEECTTTCCEEEECCC------CCSCSCEEEEEEET--TTTEEEEEETTTEEEEE
T ss_pred             CCeeEEEEECCCCCEEE-EECCCCeEEEcCCCCcEEEEecCCCCcccCCCCccEEEEEEcC--CCCEEEEEeCcCceeEE
Confidence            34689999888887554 677777888886543322221100      1235688888753  36635567777778899


Q ss_pred             EcCCCCceeEEEEec-----CCCCCeeEEEecCCCCCcEEEEEecCCcEEEEEecCCCCeeeeeec----ccCCCCeEEE
Q 022111           85 KEGNQNDWTQAHTFN-----DHKSSVNSIAWAPHELGLSLACGSSDGNISVFTATADGGWDTTRID----QAHPVGVTSV  155 (302)
Q Consensus        85 d~~~~~~~~~~~~~~-----~h~~~i~~l~~~pd~~~~~l~sg~~d~~v~~~~~~~~~~~~~~~~~----~~h~~~v~~~  155 (302)
                      |..++.    ...+.     .....|.++...++  +.+.+ |+. +-+.+|+..+. .+......    ......|.++
T Consensus       433 d~~~~~----~~~~~~~~~~l~~~~v~~i~~d~~--g~lwi-gt~-~Gl~~~~~~~~-~~~~~~~~~~~~~~~~~~i~~i  503 (795)
T 4a2l_A          433 HRNSGQ----VENFNQRNSQLVNENVYAILPDGE--GNLWL-GTL-SALVRFNPEQR-SFTTIEKEKDGTPVVSKQITTL  503 (795)
T ss_dssp             ETTTCC----EEEECTTTSCCSCSCEEEEEECSS--SCEEE-EES-SCEEEEETTTT-EEEECCBCTTCCBCCCCCEEEE
T ss_pred             eCCCCc----EEEeecCCCCcCCCeeEEEEECCC--CCEEE-Eec-CceeEEeCCCC-eEEEccccccccccCCceEEEE
Confidence            876542    22222     13457888877654  54433 344 45777775432 22111100    0112345666


Q ss_pred             EeCCCCCCCceeecccCCCceeEEEeeCCCcEEEEEEecCccccccc-cccccCCCceeEEEeeCCCCCCccEEEEEecC
Q 022111          156 SWAPAMAPGALVGLGLLDPVQKLASCGCDNTVKVWKMYNGIWKMDCF-PALQMHSDWVRSVAWAPNLGLPKSTIASASQD  234 (302)
Q Consensus       156 ~~~~~~~~~~~~~~~~~~~~~~l~s~~~D~~v~iwd~~~~~~~~~~~-~~~~~h~~~v~~v~~~p~~~~~~~~l~s~s~D  234 (302)
                      ...+.              +. |-.|+. +-+.+||..+....+... .........|.++...+++    . |-.|+..
T Consensus       504 ~~d~~--------------g~-lWigt~-~Gl~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g----~-lWigT~~  562 (795)
T 4a2l_A          504 FRDSH--------------KR-LWIGGE-EGLSVFKQEGLDIQKASILPVSNVTKLFTNCIYEASNG----I-IWVGTRE  562 (795)
T ss_dssp             EECTT--------------CC-EEEEES-SCEEEEEEETTEEEECCCSCSCGGGGSCEEEEEECTTS----C-EEEEESS
T ss_pred             EECCC--------------CC-EEEEeC-CceEEEeCCCCeEEEecCCCCCCCCCCeeEEEEECCCC----C-EEEEeCC
Confidence            55432              23 444444 458889987653211000 0011245679999888774    3 3334444


Q ss_pred             CeEEEEEeccCCcceeeeee--ccC-CCcEEEEEEccCCCEEEEecCCceEEeeec
Q 022111          235 GTVVIWTCAKEGEQWEGRVL--KDF-KTPVWSVSWSLTGNLLAVADANNVTLWKEA  287 (302)
Q Consensus       235 ~~i~iwd~~~~~~~~~~~~~--~~~-~~~v~~~~~spdg~~la~~~~d~i~~w~~~  287 (302)
                       .|..||.....  .. ...  .+. ...|.++...++|++.+++ .++|..|+..
T Consensus       563 -Gl~~~d~~~~~--~~-~~~~~~gl~~~~i~~i~~d~~g~lWi~t-~~Gl~~~~~~  613 (795)
T 4a2l_A          563 -GFYCFNEKDKQ--IK-RYNTTNGLPNNVVYGILEDSFGRLWLST-NRGISCFNPE  613 (795)
T ss_dssp             -CEEEEETTTTE--EE-EECGGGTCSCSCEEEEEECTTSCEEEEE-TTEEEEEETT
T ss_pred             -CceeECCCCCc--EE-EeCCCCCCchhheEEEEECCCCCEEEEc-CCceEEEcCC
Confidence             57778865421  11 111  112 2458899998899877666 4678888754

>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}

Probab=97.27  E-value=0.058  Score=44.40  Aligned_cols=185  Identities=8%  Similarity=-0.041  Sum_probs=100.9

Q ss_pred             CeEEEEeeCCCCCCEEEEEeCCCeEEEEEcCCCCceeEEEEecCCCCCee--EEEecCCCCCcEEEEEecCCcEEEEEec
Q 022111           57 PVWQVAWAHPKFGSILASCSYDGQVIIWKEGNQNDWTQAHTFNDHKSSVN--SIAWAPHELGLSLACGSSDGNISVFTAT  134 (302)
Q Consensus        57 ~v~~v~~~~~~~~~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~h~~~i~--~l~~~pd~~~~~l~sg~~d~~v~~~~~~  134 (302)
                      ....+.|..   +.++++.+.++.|+.+|++++......  +.   ....  .+++..   ..+......++.+.+||..
T Consensus        56 ftqGL~~~~---~~Ly~stG~~g~v~~iD~~Tgkv~~~~--l~---~~~FgeGit~~g---~~Ly~ltw~~~~v~V~D~~  124 (268)
T 3nok_A           56 FTQGLVFHQ---GHFFESTGHQGTLRQLSLESAQPVWME--RL---GNIFAEGLASDG---ERLYQLTWTEGLLFTWSGM  124 (268)
T ss_dssp             CEEEEEEET---TEEEEEETTTTEEEECCSSCSSCSEEE--EC---TTCCEEEEEECS---SCEEEEESSSCEEEEEETT
T ss_pred             ccceEEEEC---CEEEEEcCCCCEEEEEECCCCcEEeEE--CC---CCcceeEEEEeC---CEEEEEEccCCEEEEEECC
Confidence            346888862   577888889999999999887543222  22   2223  344433   2344445567889999876


Q ss_pred             CCCCeeeeeecccCCCCeEEEEeCCCCCCCceeecccCCCceeEEEeeCCCcEEEEEEecCccccccccccccCC---Cc
Q 022111          135 ADGGWDTTRIDQAHPVGVTSVSWAPAMAPGALVGLGLLDPVQKLASCGCDNTVKVWKMYNGIWKMDCFPALQMHS---DW  211 (302)
Q Consensus       135 ~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~D~~v~iwd~~~~~~~~~~~~~~~~h~---~~  211 (302)
                      +....  ..+... ... ..++                .+++.|+.+..++.|.++|..+.... ..+. ...+.   ..
T Consensus       125 Tl~~~--~ti~~~-~eG-wGLt----------------~Dg~~L~vSdGs~~l~~iDp~T~~v~-~~I~-V~~~g~~v~~  182 (268)
T 3nok_A          125 PPQRE--RTTRYS-GEG-WGLC----------------YWNGKLVRSDGGTMLTFHEPDGFALV-GAVQ-VKLRGQPVEL  182 (268)
T ss_dssp             TTEEE--EEEECS-SCC-CCEE----------------EETTEEEEECSSSEEEEECTTTCCEE-EEEE-CEETTEECCC
T ss_pred             cCcEE--EEEeCC-Cce-eEEe----------------cCCCEEEEECCCCEEEEEcCCCCeEE-EEEE-eCCCCccccc
Confidence            43211  222111 010 1111                12345555555889999997664211 1111 11111   23


Q ss_pred             eeEEEeeCCCCCCccEEEEEecCCeEEEEEeccCCcceeeee--e--------ccCCCcEEEEEEccCCCEEEEecCC
Q 022111          212 VRSVAWAPNLGLPKSTIASASQDGTVVIWTCAKEGEQWEGRV--L--------KDFKTPVWSVSWSLTGNLLAVADAN  279 (302)
Q Consensus       212 v~~v~~~p~~~~~~~~l~s~s~D~~i~iwd~~~~~~~~~~~~--~--------~~~~~~v~~~~~spdg~~la~~~~d  279 (302)
                      ++.+.|. +    +...+..-.+..|.+.|.++..-...-.+  +        .........|||+|+++.|-+++..
T Consensus       183 lNeLe~~-d----G~lyanvw~s~~I~vIDp~TG~V~~~Idl~~L~~~~~~~~~~~~~vlNGIA~dp~~~rlfVTGK~  255 (268)
T 3nok_A          183 INELECA-N----GVIYANIWHSSDVLEIDPATGTVVGVIDASALTRAVAGQVTNPEAVLNGIAVEPGSGRIFMTGKL  255 (268)
T ss_dssp             EEEEEEE-T----TEEEEEETTCSEEEEECTTTCBEEEEEECHHHHHHHTTTCCCTTCCEEEEEECTTTCCEEEEETT
T ss_pred             ccccEEe-C----CEEEEEECCCCeEEEEeCCCCcEEEEEECCCCcccccccccCcCCceEEEEEcCCCCEEEEeCCC
Confidence            5677776 4    35566665677888888865421100011  0        0122457899999987666666544

>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}

Probab=97.12  E-value=0.13  Score=45.62  Aligned_cols=155  Identities=10%  Similarity=0.091  Sum_probs=83.7

Q ss_pred             eeEEEEcc-CCCEEEEeeCCCcEEEEeecCCCceEEEEecCcccCeEEEEeeCCCCCC-EEEEEeCCC----eEEEEEcC
Q 022111           14 VHDVAMDF-YGKRLATASSDSSIKIIGLSNSASQHLATLKGHRGPVWQVAWAHPKFGS-ILASCSYDG----QVIIWKEG   87 (302)
Q Consensus        14 v~~~~~s~-~~~~l~s~~~d~~v~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~-~l~s~s~D~----~i~iwd~~   87 (302)
                      ...++++| ++..|..+...+.|+.++.....   +..+.........|+|.++  ++ ++++...++    .+...+..
T Consensus       139 P~~lavdp~~~g~Lyv~d~~~~I~~id~~~~~---v~~~~~~~~~P~~ia~d~~--G~~lyvad~~~~~~~~~v~~~~~~  213 (430)
T 3tc9_A          139 AVWLSFDPKNHNHLYLVGEQHPTRLIDFEKEY---VSTVYSGLSKVRTICWTHE--ADSMIITNDQNNNDRPNNYILTRE  213 (430)
T ss_dssp             CCEEEEETTEEEEEEEEEBTEEEEEEETTTTE---EEEEECCCSCEEEEEECTT--SSEEEEEECCSCTTSEEEEEEEGG
T ss_pred             CCEEEECCCCCCeEEEEeCCCcEEEEECCCCE---EEEEecCCCCcceEEEeCC--CCEEEEEeCCCCcccceEEEEeCC
Confidence            45688897 35556665555778877775432   2233333445678999753  67 444443222    23333332


Q ss_pred             CCCceeEEEEecCCCCCeeEEEecCCCCCcEEEEEecCCcEEEEEecCCCCe-eeeeecccCCCCeEEEEeCCCCCCCce
Q 022111           88 NQNDWTQAHTFNDHKSSVNSIAWAPHELGLSLACGSSDGNISVFTATADGGW-DTTRIDQAHPVGVTSVSWAPAMAPGAL  166 (302)
Q Consensus        88 ~~~~~~~~~~~~~h~~~i~~l~~~pd~~~~~l~sg~~d~~v~~~~~~~~~~~-~~~~~~~~h~~~v~~~~~~~~~~~~~~  166 (302)
                      . . +.....+.. ......+++.|+. +.++++-...+.|..++.... .. .....  .....-..++++|++     
T Consensus       214 g-~-~~~~~~l~~-~~~p~giavdp~~-g~lyv~d~~~~~V~~~~~~~~-~~~~~~~~--~~~~~P~gia~~pdG-----  281 (430)
T 3tc9_A          214 S-G-FKVITELTK-GQNCNGAETHPIN-GELYFNSWNAGQVFRYDFTTQ-ETTPLFTI--QDSGWEFHIQFHPSG-----  281 (430)
T ss_dssp             G-T-SCSEEEEEE-CSSCCCEEECTTT-CCEEEEETTTTEEEEEETTTT-EEEEEEEC--SSSSCCEEEEECTTS-----
T ss_pred             C-c-eeeeeeecc-CCCceEEEEeCCC-CEEEEEECCCCEEEEEECCCC-cEEEEEEc--CCCCcceeEEEcCCC-----
Confidence            2 1 111112211 2235778888842 555555556678888876422 11 11111  111234678888764     


Q ss_pred             eecccCCCce-eEEEeeCCCcEEEEEEec
Q 022111          167 VGLGLLDPVQ-KLASCGCDNTVKVWKMYN  194 (302)
Q Consensus       167 ~~~~~~~~~~-~l~s~~~D~~v~iwd~~~  194 (302)
                               + ++++-...+.|..++...
T Consensus       282 ---------~~lyv~d~~~~~I~~~~~d~  301 (430)
T 3tc9_A          282 ---------NYAYIVVVNQHYILRSDYDW  301 (430)
T ss_dssp             ---------SEEEEEETTTTEEEEEEEET
T ss_pred             ---------CEEEEEECCCCEEEEEeCCc
Confidence                     4 566667778899988764

>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3

Probab=97.11  E-value=0.095  Score=43.92  Aligned_cols=215  Identities=11%  Similarity=0.070  Sum_probs=107.8

Q ss_pred             eEEEEecCcccCeEEEEeeCCCCCCEEEEEeCCCeEEEEEcCCCCceeEEEEecCCCCCeeEEEecCCCCCcEEEEEecC
Q 022111           46 QHLATLKGHRGPVWQVAWAHPKFGSILASCSYDGQVIIWKEGNQNDWTQAHTFNDHKSSVNSIAWAPHELGLSLACGSSD  125 (302)
Q Consensus        46 ~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~h~~~i~~l~~~pd~~~~~l~sg~~d  125 (302)
                      +.+..+... .....++|.+  +++++++-..++.|..||....    ....+. ....+..+++.|+  +.++++....
T Consensus        23 ~~~~~~p~~-~~pegia~~~--~g~lyv~d~~~~~I~~~d~~g~----~~~~~~-~~~~p~gia~~~d--G~l~vad~~~   92 (306)
T 2p4o_A           23 KIITSFPVN-TFLENLASAP--DGTIFVTNHEVGEIVSITPDGN----QQIHAT-VEGKVSGLAFTSN--GDLVATGWNA   92 (306)
T ss_dssp             EEEEEECTT-CCEEEEEECT--TSCEEEEETTTTEEEEECTTCC----EEEEEE-CSSEEEEEEECTT--SCEEEEEECT
T ss_pred             eEeEeCCCC-CCcceEEECC--CCCEEEEeCCCCeEEEECCCCc----eEEEEe-CCCCceeEEEcCC--CcEEEEeccC
Confidence            334445332 3456788875  3777777768889998887542    111222 2346789999887  5544443332


Q ss_pred             C--cEEEEEecCCCCeeeeeecccCCCCeEEEEeCCCCCCCceeecccCCCceeEEEeeCCCcEEEEEEecCccccc---
Q 022111          126 G--NISVFTATADGGWDTTRIDQAHPVGVTSVSWAPAMAPGALVGLGLLDPVQKLASCGCDNTVKVWKMYNGIWKMD---  200 (302)
Q Consensus       126 ~--~v~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~D~~v~iwd~~~~~~~~~---  200 (302)
                      .  .|..++..+ +..... ...........++..+              .+..+++-..++.|.++|..++...+.   
T Consensus        93 ~~~~v~~~d~~~-g~~~~~-~~~~~~~~~~g~~~~~--------------~~~~~v~d~~~g~i~~~d~~~~~~~v~~~~  156 (306)
T 2p4o_A           93 DSIPVVSLVKSD-GTVETL-LTLPDAIFLNGITPLS--------------DTQYLTADSYRGAIWLIDVVQPSGSIWLEH  156 (306)
T ss_dssp             TSCEEEEEECTT-SCEEEE-EECTTCSCEEEEEESS--------------SSEEEEEETTTTEEEEEETTTTEEEEEEEC
T ss_pred             CcceEEEEcCCC-CeEEEE-EeCCCccccCcccccC--------------CCcEEEEECCCCeEEEEeCCCCcEeEEEEC
Confidence            2  344455332 222111 1001111112222111              234455555677788887653211100   


Q ss_pred             -ccc--ccccCCCceeEEEeeCCCCCCccEEEEEecCCeEEEEEeccCCcceeeeeeccCCCcEEEEEEccCCCEEEEec
Q 022111          201 -CFP--ALQMHSDWVRSVAWAPNLGLPKSTIASASQDGTVVIWTCAKEGEQWEGRVLKDFKTPVWSVSWSLTGNLLAVAD  277 (302)
Q Consensus       201 -~~~--~~~~h~~~v~~v~~~p~~~~~~~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~la~~~  277 (302)
                       .+.  ...+.-...+.|  +|++   +..+++-+..+.|..+++............... .....+++.++|+++++..
T Consensus       157 ~~~~~~~~~~~~~~pngi--s~dg---~~lyv~d~~~~~I~~~~~~~~g~~~~~~~~~~~-~~P~gi~vd~dG~l~va~~  230 (306)
T 2p4o_A          157 PMLARSNSESVFPAANGL--KRFG---NFLYVSNTEKMLLLRIPVDSTDKPGEPEIFVEQ-TNIDDFAFDVEGNLYGATH  230 (306)
T ss_dssp             GGGSCSSTTCCSCSEEEE--EEET---TEEEEEETTTTEEEEEEBCTTSCBCCCEEEEES-CCCSSEEEBTTCCEEEECB
T ss_pred             CccccccccCCCCcCCCc--CcCC---CEEEEEeCCCCEEEEEEeCCCCCCCccEEEecc-CCCCCeEECCCCCEEEEeC
Confidence             000  001111234455  7775   245677777889999998642111111111111 2345688999998765554


Q ss_pred             CC-ceEEeeecCCceEEE
Q 022111          278 AN-NVTLWKEAVDGEWQQ  294 (302)
Q Consensus       278 ~d-~i~~w~~~~~~~~~~  294 (302)
                      .. .|.+++.  +|....
T Consensus       231 ~~~~V~~~~~--~G~~~~  246 (306)
T 2p4o_A          231 IYNSVVRIAP--DRSTTI  246 (306)
T ss_dssp             TTCCEEEECT--TCCEEE
T ss_pred             CCCeEEEECC--CCCEEE
Confidence            43 7888874  355433

>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*

Probab=97.06  E-value=0.24  Score=47.52  Aligned_cols=247  Identities=8%  Similarity=0.008  Sum_probs=135.7

Q ss_pred             ccceeEEEEccCCCEEEEeeCCCcEEEEeecCCCceEEEEec----CcccCeEEEEeeCCCCCCEEEEEeCCCeEEEEEc
Q 022111           11 EDTVHDVAMDFYGKRLATASSDSSIKIIGLSNSASQHLATLK----GHRGPVWQVAWAHPKFGSILASCSYDGQVIIWKE   86 (302)
Q Consensus        11 ~~~v~~~~~s~~~~~l~s~~~d~~v~lw~~~~~~~~~~~~~~----~h~~~v~~v~~~~~~~~~~l~s~s~D~~i~iwd~   86 (302)
                      ...|.++..+.+|... .|+.++-|.+++.............    -....|.++....  +|++ -.|..++-|..|+.
T Consensus       309 ~~~i~~i~~D~~g~lW-igt~~~Gl~~~~~~~~~~~~~~~~~~~~~l~~~~V~~i~~d~--~g~l-WiGt~~~Gl~~~~~  384 (795)
T 4a2l_A          309 QRSVRSIFMDSQGGMW-LGTYFGGLNYYHPIRNRFKNIRNIPYKNSLSDNVVSCIVEDK--DKNL-WIGTNDGGLNLYNP  384 (795)
T ss_dssp             SSCEEEEEECTTSCEE-EEESSSCEEEECGGGGSSEEECCCTTSSSCSCSSEEEEEECT--TSCE-EEEESSSCEEEECT
T ss_pred             CCcEEEEEEeCCcCEE-EEECCCCeEEeCCCcccceEEcCCCCCCCCCCCeeEEEEECC--CCCE-EEEECCCCeEEEcC
Confidence            3579999999988755 4677777888876433222221111    1234688887643  3554 45677767888887


Q ss_pred             CCCCceeEEEEe------cCCCCCeeEEEecCCCCCcEEEEEecCCcEEEEEecCCCCeeeeeec--ccCCCCeEEEEeC
Q 022111           87 GNQNDWTQAHTF------NDHKSSVNSIAWAPHELGLSLACGSSDGNISVFTATADGGWDTTRID--QAHPVGVTSVSWA  158 (302)
Q Consensus        87 ~~~~~~~~~~~~------~~h~~~i~~l~~~pd~~~~~l~sg~~d~~v~~~~~~~~~~~~~~~~~--~~h~~~v~~~~~~  158 (302)
                      .+.. ......-      ......|.++...++  +..|-.|+.++-+.+|+..+. .+......  ......|.++...
T Consensus       385 ~~~~-~~~~~~~~~~~~~~l~~~~v~~i~~d~~--g~~lWigt~~~Gl~~~d~~~~-~~~~~~~~~~~l~~~~v~~i~~d  460 (795)
T 4a2l_A          385 ITQR-FTSYTLQEDESARGIGSNNIKAVYVDEK--KSLVYIGTHAGGLSILHRNSG-QVENFNQRNSQLVNENVYAILPD  460 (795)
T ss_dssp             TTCC-EEEECCC------CCSCSCEEEEEEETT--TTEEEEEETTTEEEEEETTTC-CEEEECTTTSCCSCSCEEEEEEC
T ss_pred             CCCc-EEEEecCCCCcccCCCCccEEEEEEcCC--CCEEEEEeCcCceeEEeCCCC-cEEEeecCCCCcCCCeeEEEEEC
Confidence            5432 1111100      012356888877654  543556677677888876532 22111100  0112345665544


Q ss_pred             CCCCCCceeecccCCCceeEEEeeCCCcEEEEEEecCcccccccccc----ccCCCceeEEEeeCCCCCCccEEEEEecC
Q 022111          159 PAMAPGALVGLGLLDPVQKLASCGCDNTVKVWKMYNGIWKMDCFPAL----QMHSDWVRSVAWAPNLGLPKSTIASASQD  234 (302)
Q Consensus       159 ~~~~~~~~~~~~~~~~~~~l~s~~~D~~v~iwd~~~~~~~~~~~~~~----~~h~~~v~~v~~~p~~~~~~~~l~s~s~D  234 (302)
                      +.              +. |-.|+. +-+.+||..++...  .+...    ......|.++...+++    . |-.|+. 
T Consensus       461 ~~--------------g~-lwigt~-~Gl~~~~~~~~~~~--~~~~~~~~~~~~~~~i~~i~~d~~g----~-lWigt~-  516 (795)
T 4a2l_A          461 GE--------------GN-LWLGTL-SALVRFNPEQRSFT--TIEKEKDGTPVVSKQITTLFRDSHK----R-LWIGGE-  516 (795)
T ss_dssp             SS--------------SC-EEEEES-SCEEEEETTTTEEE--ECCBCTTCCBCCCCCEEEEEECTTC----C-EEEEES-
T ss_pred             CC--------------CC-EEEEec-CceeEEeCCCCeEE--EccccccccccCCceEEEEEECCCC----C-EEEEeC-
Confidence            32              23 444444 44888887654321  11111    1134678999888774    3 333444 


Q ss_pred             CeEEEEEeccCCcceeeeee------ccCCCcEEEEEEccCCCEEEEecCCceEEeeecCCceEEEe
Q 022111          235 GTVVIWTCAKEGEQWEGRVL------KDFKTPVWSVSWSLTGNLLAVADANNVTLWKEAVDGEWQQV  295 (302)
Q Consensus       235 ~~i~iwd~~~~~~~~~~~~~------~~~~~~v~~~~~spdg~~la~~~~d~i~~w~~~~~~~~~~~  295 (302)
                      +.|..||.....  .  ...      .-....|.++...++|++.+... +++..|+.. .+.+...
T Consensus       517 ~Gl~~~~~~~~~--~--~~~~~~~~~~l~~~~i~~i~~d~~g~lWigT~-~Gl~~~d~~-~~~~~~~  577 (795)
T 4a2l_A          517 EGLSVFKQEGLD--I--QKASILPVSNVTKLFTNCIYEASNGIIWVGTR-EGFYCFNEK-DKQIKRY  577 (795)
T ss_dssp             SCEEEEEEETTE--E--EECCCSCSCGGGGSCEEEEEECTTSCEEEEES-SCEEEEETT-TTEEEEE
T ss_pred             CceEEEeCCCCe--E--EEecCCCCCCCCCCeeEEEEECCCCCEEEEeC-CCceeECCC-CCcEEEe
Confidence            457888876431  1  111      01234689999999998776664 488888853 3444443

>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1

Probab=96.87  E-value=0.07  Score=50.24  Aligned_cols=55  Identities=18%  Similarity=0.276  Sum_probs=35.7

Q ss_pred             cCCeEEEEEeccCCcceeeeeeccCCCcEEEEEEccCCCEEEEecCC-ceEEeeecCCce
Q 022111          233 QDGTVVIWTCAKEGEQWEGRVLKDFKTPVWSVSWSLTGNLLAVADAN-NVTLWKEAVDGE  291 (302)
Q Consensus       233 ~D~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~la~~~~d-~i~~w~~~~~~~  291 (302)
                      .++.|..||+.+.+..|....    ..+.+...+...|.+|.+++.+ .++.||......
T Consensus       436 ~~g~l~A~D~~tG~~~W~~~~----~~~~~~~~~~t~gg~vf~g~~dg~l~a~d~~tG~~  491 (668)
T 1kv9_A          436 VSGALLAWDPVKQKAAWKVPY----PTHWNGGTLSTAGNLVFQGTAAGQMHAYSADKGEA  491 (668)
T ss_dssp             CEEEEEEEETTTTEEEEEEEE----SSSCCCCEEEETTTEEEEECTTSEEEEEETTTCCE
T ss_pred             ccceEEEEeCCCCcEEEEccC----CCCCcCceeEeCCCEEEEECCcccchhhhhhcChh
Confidence            358899999877655554332    2234444555667777778777 699999765444

>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}

Probab=96.69  E-value=0.27  Score=42.76  Aligned_cols=220  Identities=8%  Similarity=-0.057  Sum_probs=114.5

Q ss_pred             CCCcEEEEeecCCCceEEEEecCcccCeEEEEeeCCCCCCEEEEEeCCCeEEEEEcCCCCceeEEEEecCCCCCeeEEEe
Q 022111           31 SDSSIKIIGLSNSASQHLATLKGHRGPVWQVAWAHPKFGSILASCSYDGQVIIWKEGNQNDWTQAHTFNDHKSSVNSIAW  110 (302)
Q Consensus        31 ~d~~v~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~h~~~i~~l~~  110 (302)
                      ....|+..++.......  .+.+ ......++|.+. .+.++.+-...+.|..+++.....   ...+.........+++
T Consensus        94 ~~~~I~~i~~~~~~~~~--~~~~-~~~~~gl~~d~~-~~~ly~~D~~~~~I~r~~~~g~~~---~~~~~~~~~~p~glav  166 (386)
T 3v65_B           94 NRIDIRQVLPHRSEYTL--LLNN-LENAIALDFHHR-RELVFWSDVTLDRILRANLNGSNV---EEVVSTGLESPGGLAV  166 (386)
T ss_dssp             CBSCEEEECTTSCCCEE--EECS-CSCEEEEEEETT-TTEEEEEETTTTEEEEEETTSCCE---EEEECSSCSCCCCEEE
T ss_pred             cCccceeeccCCCcEEE--EecC-CCccEEEEEecC-CCeEEEEeCCCCcEEEEecCCCCc---EEEEeCCCCCccEEEE
Confidence            34567777775433222  2222 334678999754 356666766788898888765421   1112222334567777


Q ss_pred             cCCCCCcEEEEEecCCcEEEEEecCCCCeeeeeecccCCCCeEEEEeCCCCCCCceeecccCCCceeEEEeeCC-CcEEE
Q 022111          111 APHELGLSLACGSSDGNISVFTATADGGWDTTRIDQAHPVGVTSVSWAPAMAPGALVGLGLLDPVQKLASCGCD-NTVKV  189 (302)
Q Consensus       111 ~pd~~~~~l~sg~~d~~v~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~D-~~v~i  189 (302)
                      .+.. +.+..+-...+.|.+.+....  .....+. ........++..|..             +.++++-... +.|..
T Consensus       167 d~~~-g~lY~~d~~~~~I~~~~~dg~--~~~~l~~-~~l~~P~giavdp~~-------------g~ly~td~~~~~~I~r  229 (386)
T 3v65_B          167 DWVH-DKLYWTDSGTSRIEVANLDGA--HRKVLLW-QSLEKPRAIALHPME-------------GTIYWTDWGNTPRIEA  229 (386)
T ss_dssp             ETTT-TEEEEEETTTTEEEECBTTSC--SCEEEEC-SSCSCEEEEEEETTT-------------TEEEEEECSSSCEEEE
T ss_pred             EeCC-CeEEEEcCCCCeEEEEeCCCC--ceEEeec-CCCCCCcEEEEEcCC-------------CeEEEeccCCCCEEEE
Confidence            7653 444455455566766654321  1111111 122234566666542             3455554444 66777


Q ss_pred             EEEecCccccccccccccCCCceeEEEeeCCCCCCccEEEEEecCCeEEEEEeccCCcceeeeeeccCCCcEEEEEEccC
Q 022111          190 WKMYNGIWKMDCFPALQMHSDWVRSVAWAPNLGLPKSTIASASQDGTVVIWTCAKEGEQWEGRVLKDFKTPVWSVSWSLT  269 (302)
Q Consensus       190 wd~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~spd  269 (302)
                      +++.....  ..+  ....-.+-+.|+++|++   +...++=+..+.|..+|+.....   ..+.........++++ ..
T Consensus       230 ~~~dG~~~--~~~--~~~~~~~PnGlavd~~~---~~lY~aD~~~~~I~~~d~dG~~~---~~~~~~~~~~P~giav-~~  298 (386)
T 3v65_B          230 SSMDGSGR--RII--ADTHLFWPNGLTIDYAG---RRMYWVDAKHHVIERANLDGSHR---KAVISQGLPHPFAITV-FE  298 (386)
T ss_dssp             EETTSCSC--EEE--ECSSCSCEEEEEEEGGG---TEEEEEETTTTEEEEECTTSCSC---EEEECSSCSSEEEEEE-ET
T ss_pred             EeCCCCCc--EEE--EECCCCCeeeEEEeCCC---CEEEEEECCCCEEEEEeCCCCee---EEEEECCCCCceEEEE-EC
Confidence            77654211  111  11123346889999874   35666666778888888764321   1222222234567777 33


Q ss_pred             CCEEEEecCC-ceEEee
Q 022111          270 GNLLAVADAN-NVTLWK  285 (302)
Q Consensus       270 g~~la~~~~d-~i~~w~  285 (302)
                      +.++.+.... .|..++
T Consensus       299 ~~ly~td~~~~~V~~~~  315 (386)
T 3v65_B          299 DSLYWTDWHTKSINSAN  315 (386)
T ss_dssp             TEEEEEETTTTEEEEEE
T ss_pred             CEEEEeeCCCCeEEEEE
Confidence            4443333333 566665

>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}

Probab=96.66  E-value=0.2  Score=40.67  Aligned_cols=189  Identities=8%  Similarity=-0.041  Sum_probs=99.7

Q ss_pred             Ccc--cCeEEEEeeCCCCCCEEEEEeCC--CeEEEEEcCCCCceeEEEEecCCCCC-eeEEEecCCCCCcEEEEEecCCc
Q 022111           53 GHR--GPVWQVAWAHPKFGSILASCSYD--GQVIIWKEGNQNDWTQAHTFNDHKSS-VNSIAWAPHELGLSLACGSSDGN  127 (302)
Q Consensus        53 ~h~--~~v~~v~~~~~~~~~~l~s~s~D--~~i~iwd~~~~~~~~~~~~~~~h~~~-i~~l~~~pd~~~~~l~sg~~d~~  127 (302)
                      .|.  +....+.|..   +.++.|.+.+  ..|+.+|+.++..   ...+...... --.+++..   +.+......++.
T Consensus        16 phd~~~ftqGL~~~~---~~LyestG~~g~S~v~~vD~~tgkv---~~~~~l~~~~fgeGi~~~~---~~ly~ltw~~~~   86 (243)
T 3mbr_X           16 PHDTTAFTEGLFYLR---GHLYESTGETGRSSVRKVDLETGRI---LQRAEVPPPYFGAGIVAWR---DRLIQLTWRNHE   86 (243)
T ss_dssp             ECCTTCCEEEEEEET---TEEEEEECCTTSCEEEEEETTTCCE---EEEEECCTTCCEEEEEEET---TEEEEEESSSSE
T ss_pred             CCCCccccccEEEEC---CEEEEECCCCCCceEEEEECCCCCE---EEEEeCCCCcceeEEEEeC---CEEEEEEeeCCE
Confidence            454  3456899963   5677777765  4899999987643   3333222211 12334432   234444556788


Q ss_pred             EEEEEecCCCCeeeeeecccCCCCeEEEEeCCCCCCCceeecccCCCceeEEEeeCCCcEEEEEEecCccccccccccc-
Q 022111          128 ISVFTATADGGWDTTRIDQAHPVGVTSVSWAPAMAPGALVGLGLLDPVQKLASCGCDNTVKVWKMYNGIWKMDCFPALQ-  206 (302)
Q Consensus       128 v~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~D~~v~iwd~~~~~~~~~~~~~~~-  206 (302)
                      +.+||..+....  ..+... ... ..+++                +++.|+.+-.++.|.++|..+...    ..++. 
T Consensus        87 v~v~D~~tl~~~--~ti~~~-~~G-wglt~----------------dg~~L~vSdgs~~l~~iDp~t~~~----~~~I~V  142 (243)
T 3mbr_X           87 GFVYDLATLTPR--ARFRYP-GEG-WALTS----------------DDSHLYMSDGTAVIRKLDPDTLQQ----VGSIKV  142 (243)
T ss_dssp             EEEEETTTTEEE--EEEECS-SCC-CEEEE----------------CSSCEEEECSSSEEEEECTTTCCE----EEEEEC
T ss_pred             EEEEECCcCcEE--EEEeCC-CCc-eEEee----------------CCCEEEEECCCCeEEEEeCCCCeE----EEEEEE
Confidence            999987643211  222111 111 12222                234444444478899999766421    11111 


Q ss_pred             -cCC---CceeEEEeeCCCCCCccEEEEEecCCeEEEEEeccCCcceeee---eec-------cCCCcEEEEEEccCCCE
Q 022111          207 -MHS---DWVRSVAWAPNLGLPKSTIASASQDGTVVIWTCAKEGEQWEGR---VLK-------DFKTPVWSVSWSLTGNL  272 (302)
Q Consensus       207 -~h~---~~v~~v~~~p~~~~~~~~l~s~s~D~~i~iwd~~~~~~~~~~~---~~~-------~~~~~v~~~~~spdg~~  272 (302)
                       .+.   ..++.+.|. +    +...+..-.+..|.+.|.++..-.-.-.   +..       ........|||+|+++.
T Consensus       143 ~~~g~~~~~lNeLe~~-~----G~lyanvw~s~~I~vIDp~tG~V~~~idl~~l~~~~~~~~~~~~~vlNGIA~d~~~~~  217 (243)
T 3mbr_X          143 TAGGRPLDNLNELEWV-N----GELLANVWLTSRIARIDPASGKVVAWIDLQALVPDADALTDSTNDVLNGIAFDAEHDR  217 (243)
T ss_dssp             EETTEECCCEEEEEEE-T----TEEEEEETTTTEEEEECTTTCBEEEEEECGGGSTTTTSCCCTTSSCEEEEEEETTTTE
T ss_pred             ccCCcccccceeeEEe-C----CEEEEEECCCCeEEEEECCCCCEEEEEECCcCccccccccCCcCCceEEEEEcCCCCE
Confidence             111   235666665 3    2555555567788888876542110000   000       11235789999998877


Q ss_pred             EEEecCC
Q 022111          273 LAVADAN  279 (302)
Q Consensus       273 la~~~~d  279 (302)
                      |-+++..
T Consensus       218 lfVTGK~  224 (243)
T 3mbr_X          218 LFVTGKR  224 (243)
T ss_dssp             EEEEETT
T ss_pred             EEEECCC
Confidence            7666554

>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}

Probab=96.60  E-value=0.53  Score=44.94  Aligned_cols=239  Identities=14%  Similarity=0.080  Sum_probs=128.0

Q ss_pred             cccceeEEEEccCCCEEEEeeCCCcEEEEeecCCCceEEEEe-------cCcccCeEEEEeeCCCCCCEEEEEeCCCeEE
Q 022111           10 HEDTVHDVAMDFYGKRLATASSDSSIKIIGLSNSASQHLATL-------KGHRGPVWQVAWAHPKFGSILASCSYDGQVI   82 (302)
Q Consensus        10 h~~~v~~~~~s~~~~~l~s~~~d~~v~lw~~~~~~~~~~~~~-------~~h~~~v~~v~~~~~~~~~~l~s~s~D~~i~   82 (302)
                      ....|.++..+.+|.+. .|..++-|..++............       ......|.++....  +|.+ -.|..++-+.
T Consensus       311 ~~~~v~~i~~D~~g~lW-igt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~--~g~l-Wigt~~~Gl~  386 (781)
T 3v9f_A          311 SNASARYIFQDSFNNIW-IGTWGGGINFISNAPPTFHTWSYSPTQMNESSLSNKVVSSVCDDG--QGKL-WIGTDGGGIN  386 (781)
T ss_dssp             SSSCEEEEEECSSCCEE-EEEBSSCEEEECSSCCSCEEEC----CCCSSCCSSSCEEEEEECT--TSCE-EEEEBSSCEE
T ss_pred             CCCeEEEEEEeCCCCEE-EEecCCeEEEeCCCCCcceeeccCccccccCCCCCcceEEEEEcC--CCCE-EEEeCCCcEE
Confidence            34578999989888654 466677788887654332222110       01235688887643  3554 4556556677


Q ss_pred             EEEcCCCCceeEEEEe----cCCCCCeeEEEecCCCCCcEEEEEecCCcEEEEEecCCCCeeeeeecccCCCCeEEEEeC
Q 022111           83 IWKEGNQNDWTQAHTF----NDHKSSVNSIAWAPHELGLSLACGSSDGNISVFTATADGGWDTTRIDQAHPVGVTSVSWA  158 (302)
Q Consensus        83 iwd~~~~~~~~~~~~~----~~h~~~i~~l~~~pd~~~~~l~sg~~d~~v~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~  158 (302)
                      .|+..+.    ....+    ......|.++...++  +. |-.|+.++-+..++..+. .+............|.++...
T Consensus       387 ~~~~~~~----~~~~~~~~~~~~~~~v~~i~~d~~--g~-lWigt~~~Gl~~~~~~~~-~~~~~~~~~~~~~~v~~i~~d  458 (781)
T 3v9f_A          387 VFENGKR----VAIYNKENRELLSNSVLCSLKDSE--GN-LWFGTYLGNISYYNTRLK-KFQIIELEKNELLDVRVFYED  458 (781)
T ss_dssp             EEETTEE----EEECC-----CCCSBEEEEEECTT--SC-EEEEETTEEEEEECSSSC-EEEECCSTTTCCCCEEEEEEC
T ss_pred             EEECCCC----eEEEccCCCCCCCcceEEEEECCC--CC-EEEEeccCCEEEEcCCCC-cEEEeccCCCCCCeEEEEEEC
Confidence            8876432    11111    123466888877554  44 444666666777764322 121111000122345665544


Q ss_pred             CCCCCCceeecccCCCceeEEEeeCCCcEEEEEEecCcccccccccc---ccCCCceeEEEeeCCCCCCccEEEEEecCC
Q 022111          159 PAMAPGALVGLGLLDPVQKLASCGCDNTVKVWKMYNGIWKMDCFPAL---QMHSDWVRSVAWAPNLGLPKSTIASASQDG  235 (302)
Q Consensus       159 ~~~~~~~~~~~~~~~~~~~l~s~~~D~~v~iwd~~~~~~~~~~~~~~---~~h~~~v~~v~~~p~~~~~~~~l~s~s~D~  235 (302)
                      ++              + .|-.|+. +-|.++|..++.+..  +...   ......|.++...+++    . |-.|+.++
T Consensus       459 ~~--------------g-~lwigt~-~Gl~~~~~~~~~~~~--~~~~~~~~~~~~~i~~i~~d~~g----~-lWigt~~~  515 (781)
T 3v9f_A          459 KN--------------K-KIWIGTH-AGVFVIDLASKKVIH--HYDTSNSQLLENFVRSIAQDSEG----R-FWIGTFGG  515 (781)
T ss_dssp             TT--------------S-EEEEEET-TEEEEEESSSSSCCE--EECTTTSSCSCSCEEEEEECTTC----C-EEEEESSS
T ss_pred             CC--------------C-CEEEEEC-CceEEEeCCCCeEEe--cccCcccccccceeEEEEEcCCC----C-EEEEEcCC
Confidence            32              2 3444454 458888876543211  1111   1124678999887764    3 44555544


Q ss_pred             eEEEEEeccCCcceeeeeec--cC-CCcEEEEEEccCCCEEEEecCCce-EEeeec
Q 022111          236 TVVIWTCAKEGEQWEGRVLK--DF-KTPVWSVSWSLTGNLLAVADANNV-TLWKEA  287 (302)
Q Consensus       236 ~i~iwd~~~~~~~~~~~~~~--~~-~~~v~~~~~spdg~~la~~~~d~i-~~w~~~  287 (302)
                      .|..+|.+...  .. ....  +. ...|.++...++|++.++.. +++ ..|+..
T Consensus       516 Gl~~~~~~~~~--~~-~~~~~~~l~~~~i~~i~~d~~g~lWi~T~-~Glv~~~d~~  567 (781)
T 3v9f_A          516 GVGIYTPDMQL--VR-KFNQYEGFCSNTINQIYRSSKGQMWLATG-EGLVCFPSAR  567 (781)
T ss_dssp             CEEEECTTCCE--EE-EECTTTTCSCSCEEEEEECTTSCEEEEET-TEEEEESCTT
T ss_pred             CEEEEeCCCCe--EE-EccCCCCCCCCeeEEEEECCCCCEEEEEC-CCceEEECCC
Confidence            46677764321  11 1111  11 34688999888998776664 677 778753

>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}

Probab=96.49  E-value=0.27  Score=40.21  Aligned_cols=206  Identities=7%  Similarity=0.036  Sum_probs=109.9

Q ss_pred             ccccceeEEEEccCCCEEEE-eeCCCcEEEEeecCCCceEEEEe--cCcccCeEEEEeeCCCCCCEEEEEeCCCeEEEEE
Q 022111            9 GHEDTVHDVAMDFYGKRLAT-ASSDSSIKIIGLSNSASQHLATL--KGHRGPVWQVAWAHPKFGSILASCSYDGQVIIWK   85 (302)
Q Consensus         9 ~h~~~v~~~~~s~~~~~l~s-~~~d~~v~lw~~~~~~~~~~~~~--~~h~~~v~~v~~~~~~~~~~l~s~s~D~~i~iwd   85 (302)
                      |-.+.+..++++|+++.|++ ...++.|...|..   ++.+..+  .+. ...-.|++..+  +.++++.-.++.+.+++
T Consensus        24 g~~~~lSGla~~~~~~~L~aV~d~~~~I~~ld~~---g~v~~~i~l~g~-~D~EGIa~~~~--g~~~vs~E~~~~l~~~~   97 (255)
T 3qqz_A           24 GITNNISSLTWSAQSNTLFSTINKPAAIVEMTTN---GDLIRTIPLDFV-KDLETIEYIGD--NQFVISDERDYAIYVIS   97 (255)
T ss_dssp             TCCSCEEEEEEETTTTEEEEEEETTEEEEEEETT---CCEEEEEECSSC-SSEEEEEECST--TEEEEEETTTTEEEEEE
T ss_pred             CcccCcceeEEeCCCCEEEEEECCCCeEEEEeCC---CCEEEEEecCCC-CChHHeEEeCC--CEEEEEECCCCcEEEEE
Confidence            44567999999998766655 5556666666665   2333333  332 34667887643  56656655677888888


Q ss_pred             cCCCCceeEEEEe--c----CCCCCeeEEEecCCCCCcEEEEEecCCcEEEEEecC--CC-Ceeeeee----cccCCCCe
Q 022111           86 EGNQNDWTQAHTF--N----DHKSSVNSIAWAPHELGLSLACGSSDGNISVFTATA--DG-GWDTTRI----DQAHPVGV  152 (302)
Q Consensus        86 ~~~~~~~~~~~~~--~----~h~~~i~~l~~~pd~~~~~l~sg~~d~~v~~~~~~~--~~-~~~~~~~----~~~h~~~v  152 (302)
                      +............  .    ..+.-...|+|.|.  +..|.++.......+|....  .. .......    ...+....
T Consensus        98 v~~~~~i~~~~~~~~~~~~~~~N~g~EGLA~d~~--~~~L~va~E~~p~~i~~~~g~~~~~~l~i~~~~~~~~~~~~~d~  175 (255)
T 3qqz_A           98 LTPNSEVKILKKIKIPLQESPTNCGFEGLAYSRQ--DHTFWFFKEKNPIEVYKVNGLLSSNELHISKDKALQRQFTLDDV  175 (255)
T ss_dssp             ECTTCCEEEEEEEECCCSSCCCSSCCEEEEEETT--TTEEEEEEESSSEEEEEEESTTCSSCCEEEECHHHHHTCCSSCC
T ss_pred             cCCCCeeeeeeeeccccccccccCCcceEEEeCC--CCEEEEEECcCCceEEEEcccccCCceeeecchhhccccccCCc
Confidence            7554321112222  1    13445689999997  33455555544555665531  11 1111100    01123345


Q ss_pred             EEEEeCCCCCCCceeecccCCCceeEEEeeCCCcEEEEEEecCcccc-cccccccc---CCCceeEEEeeCCCCCCccEE
Q 022111          153 TSVSWAPAMAPGALVGLGLLDPVQKLASCGCDNTVKVWKMYNGIWKM-DCFPALQM---HSDWVRSVAWAPNLGLPKSTI  228 (302)
Q Consensus       153 ~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~D~~v~iwd~~~~~~~~-~~~~~~~~---h~~~v~~v~~~p~~~~~~~~l  228 (302)
                      .++++.|..             +.+++.....+.+-++|........ .....+.+   --..-..|+|.|++    +..
T Consensus       176 S~l~~dp~t-------------g~lliLS~~s~~L~~~d~~g~~~~~~~L~~g~~~l~~~~~qpEGia~d~~G----~ly  238 (255)
T 3qqz_A          176 SGAEFNQQK-------------NTLLVLSHESRALQEVTLVGEVIGEMSLTKGSRGLSHNIKQAEGVAMDASG----NIY  238 (255)
T ss_dssp             CEEEEETTT-------------TEEEEEETTTTEEEEECTTCCEEEEEECSTTGGGCSSCCCSEEEEEECTTC----CEE
T ss_pred             eeEEEcCCC-------------CeEEEEECCCCeEEEEcCCCCEEEEEEcCCccCCcccccCCCCeeEECCCC----CEE
Confidence            677777753             4566666667777777755331111 00011111   11245789999986    444


Q ss_pred             EEEecCCeEEEE
Q 022111          229 ASASQDGTVVIW  240 (302)
Q Consensus       229 ~s~s~D~~i~iw  240 (302)
                      ++ |+-.-+..|
T Consensus       239 Iv-sE~n~~y~f  249 (255)
T 3qqz_A          239 IV-SEPNRFYRF  249 (255)
T ss_dssp             EE-ETTTEEEEE
T ss_pred             EE-cCCceEEEE
Confidence            44 555544444

>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}

Probab=96.48  E-value=0.42  Score=42.35  Aligned_cols=202  Identities=9%  Similarity=0.053  Sum_probs=99.8

Q ss_pred             eeEEEEccC--CCEEEEeeCCCcEEEEeecCCCceEEEEecCcccCeEEEEeeCCCCCCEEEEEeCC---Ce-EEEEEcC
Q 022111           14 VHDVAMDFY--GKRLATASSDSSIKIIGLSNSASQHLATLKGHRGPVWQVAWAHPKFGSILASCSYD---GQ-VIIWKEG   87 (302)
Q Consensus        14 v~~~~~s~~--~~~l~s~~~d~~v~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~s~D---~~-i~iwd~~   87 (302)
                      ...++++++  ...|..+...+.|+.++....  . +..+.........|++.++  |+++++....   .. +...+..
T Consensus       141 P~gvavd~~s~~g~Lyv~D~~~~I~~id~~~g--~-v~~~~~~~~~P~giavd~d--G~lyVad~~~~~~~~gv~~~~~~  215 (433)
T 4hw6_A          141 IWRMMFDPNSNYDDLYWVGQRDAFRHVDFVNQ--Y-VDIKTTNIGQCADVNFTLN--GDMVVVDDQSSDTNTGIYLFTRA  215 (433)
T ss_dssp             CCEEEECTTTTTCEEEEECBTSCEEEEETTTT--E-EEEECCCCSCEEEEEECTT--CCEEEEECCSCTTSEEEEEECGG
T ss_pred             CceEEEccccCCCEEEEEeCCCCEEEEECCCC--E-EEEeecCCCCccEEEECCC--CCEEEEcCCCCcccceEEEEECC
Confidence            457889984  334554444478888887443  2 3333333445778999754  6765554421   22 2222222


Q ss_pred             CCCceeEEEEecCCCCCeeEEEecCCCCCcEEEEEecCCcEEEEEecCCCCeeeeeecccCCCCeEEEEeCCCCCCCcee
Q 022111           88 NQNDWTQAHTFNDHKSSVNSIAWAPHELGLSLACGSSDGNISVFTATADGGWDTTRIDQAHPVGVTSVSWAPAMAPGALV  167 (302)
Q Consensus        88 ~~~~~~~~~~~~~h~~~i~~l~~~pd~~~~~l~sg~~d~~v~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~  167 (302)
                      ..  ......+. .......+++.|+. +.+.++-..++.|+.++... +..............-..++++|++      
T Consensus       216 ~~--~~~~~~~~-~~~~P~giavd~~~-G~lyv~d~~~~~V~~~d~~~-g~~~~~~~~~~~~~~~~~ia~dpdG------  284 (433)
T 4hw6_A          216 SG--FTERLSLC-NARGAKTCAVHPQN-GKIYYTRYHHAMISSYDPAT-GTLTEEEVMMDTKGSNFHIVWHPTG------  284 (433)
T ss_dssp             GT--TCCEEEEE-ECSSBCCCEECTTT-CCEEECBTTCSEEEEECTTT-CCEEEEEEECSCCSSCEEEEECTTS------
T ss_pred             CC--eecccccc-ccCCCCEEEEeCCC-CeEEEEECCCCEEEEEECCC-CeEEEEEeccCCCCCcccEEEeCCC------
Confidence            11  11001111 12334667788842 54444544556777776542 2220111111111122357777753      


Q ss_pred             ecccCCCceeEEEeeCCCcEEEEEEecCccccccccccc------cC---------CCceeEEEe---------eCCCCC
Q 022111          168 GLGLLDPVQKLASCGCDNTVKVWKMYNGIWKMDCFPALQ------MH---------SDWVRSVAW---------APNLGL  223 (302)
Q Consensus       168 ~~~~~~~~~~l~s~~~D~~v~iwd~~~~~~~~~~~~~~~------~h---------~~~v~~v~~---------~p~~~~  223 (302)
                             ..++++-...+.|+.++.......+.....+.      +.         -..-..+++         .++   
T Consensus       285 -------~~LYvad~~~~~I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~giav~~n~~y~~dd~~---  354 (433)
T 4hw6_A          285 -------DWAYIIYNGKHCIYRVDYNRETGKLAVPYIVCGQHSSPGWVDGMGTGARLWGPNQGIFVKNEAYAGEEDE---  354 (433)
T ss_dssp             -------SEEEEEETTTTEEEEEEBCTTTCCBCCCEEEEECTTCCCCBCEEGGGSBCSSEEEEEEEECGGGTTSSCC---
T ss_pred             -------CEEEEEeCCCCEEEEEeCCCCCcccCcEEEEEecCCCCccCCCcccceEEcCCccEEEEccccccccCCC---
Confidence                   13566666677888887652110000000110      11         122456888         443   


Q ss_pred             CccEEEEEecCCeEEEEEe
Q 022111          224 PKSTIASASQDGTVVIWTC  242 (302)
Q Consensus       224 ~~~~l~s~s~D~~i~iwd~  242 (302)
                       ++..++-...+.|+.++.
T Consensus       355 -g~lyvaD~~n~~I~~~~~  372 (433)
T 4hw6_A          355 -YDFYFCDRDSHTVRVLTP  372 (433)
T ss_dssp             -EEEEEEETTTTEEEEECT
T ss_pred             -CcEEEEECCCCEEEEECC
Confidence             366777677788888874

>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}

Probab=96.40  E-value=0.4  Score=41.17  Aligned_cols=76  Identities=20%  Similarity=0.220  Sum_probs=42.3

Q ss_pred             ceeEEEeeCCCC---CCccEEEEEecCCeEEEEEeccCCcceeeeeeccCCCcEEEEEEccCCCEEEEecCCceEEeee
Q 022111          211 WVRSVAWAPNLG---LPKSTIASASQDGTVVIWTCAKEGEQWEGRVLKDFKTPVWSVSWSLTGNLLAVADANNVTLWKE  286 (302)
Q Consensus       211 ~v~~v~~~p~~~---~~~~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~la~~~~d~i~~w~~  286 (302)
                      ....+.|.+...   +.+..+++.-..+.|...++..........++......+..+++.|||.++++.+...=+||++
T Consensus       272 ap~G~~~y~g~~fp~~~g~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~rp~~v~~~pdG~lyv~td~~~g~I~ri  350 (353)
T 2g8s_A          272 AVSGMAFYNSDKFPQWQQKLFIGALKDKDVIVMSVNGDKVTEDGRILTDRGQRIRDVRTGPDGYLYVLTDESSGELLKV  350 (353)
T ss_dssp             CEEEEEEECCSSSGGGTTEEEEEETTTTEEEEEEEETTEEEEEEEESGGGCCCEEEEEECTTSCEEEEECSTTEEEEEE
T ss_pred             CcceeEEECCccCcccCCcEEEEEccCCEEEEEEeCCCeEeeeEEcccCCCCceeEEEECCCCcEEEEEeCCCCEEEEE
Confidence            456677754211   2245666665677777777653211111122223335788999999999777655333355554

>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}

Probab=96.31  E-value=0.45  Score=40.83  Aligned_cols=104  Identities=15%  Similarity=0.078  Sum_probs=56.8

Q ss_pred             ceeEEEEccCCCEEEEeeCCCcEEEEeecCCCceEEEEec---CcccCeEEEEeeCCC--CCCEEEEEeCC-----CeEE
Q 022111           13 TVHDVAMDFYGKRLATASSDSSIKIIGLSNSASQHLATLK---GHRGPVWQVAWAHPK--FGSILASCSYD-----GQVI   82 (302)
Q Consensus        13 ~v~~~~~s~~~~~l~s~~~d~~v~lw~~~~~~~~~~~~~~---~h~~~v~~v~~~~~~--~~~~l~s~s~D-----~~i~   82 (302)
                      .-..++|.|+|++++ +..++.|++++ . .....+..+.   ........|+|.++-  .+.+.++-...     ..|.
T Consensus        32 ~P~~ia~~pdG~l~V-~e~~g~I~~i~-~-g~~~~~~~~~v~~~g~~~p~gia~~pdf~~~g~lYv~~~~~~~~~~~~v~  108 (352)
T 2ism_A           32 VPWALAFLPDGGMLI-AERPGRIRLFR-E-GRLSTYAELSVYHRGESGLLGLALHPRFPQEPYVYAYRTVAEGGLRNQVV  108 (352)
T ss_dssp             CEEEEEECTTSCEEE-EETTTEEEEEE-T-TEEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEECTTSSEEEEE
T ss_pred             CceEEEEcCCCeEEE-EeCCCeEEEEE-C-CCccEeecceEeecCCCCceeEEECCCCCCCCEEEEEEecCCCCCccEEE
Confidence            356799999998555 46679898887 3 2223333221   123456789997530  24455554433     5677


Q ss_pred             EEEcCCCCc--ee-EEEEec---CCCCCeeEEEecCCCCCcEEEE
Q 022111           83 IWKEGNQND--WT-QAHTFN---DHKSSVNSIAWAPHELGLSLAC  121 (302)
Q Consensus        83 iwd~~~~~~--~~-~~~~~~---~h~~~i~~l~~~pd~~~~~l~s  121 (302)
                      .++......  .+ ....+.   ........++|.||  |.+.++
T Consensus       109 r~~~~~~~~~~~~~l~~~~p~~~~~~h~~~~l~~~pd--G~Lyv~  151 (352)
T 2ism_A          109 RLRHLGERGVLDRVVLDGIPARPHGLHSGGRIAFGPD--GMLYVT  151 (352)
T ss_dssp             EEEECSSCEEEEEEEEEEECCCTTCCCCCCCEEECTT--SCEEEE
T ss_pred             EEEeCCCCcCceEEEEEeCCCCCCCCcCCceEEECCC--CCEEEE
Confidence            777653211  01 112232   11233478999998  544444

>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}

Probab=96.24  E-value=0.87  Score=43.44  Aligned_cols=249  Identities=12%  Similarity=-0.005  Sum_probs=129.5

Q ss_pred             ccceeEEEEccCCCEEEEeeCCCcEEEEeecCCCceEEEE-------e-----cCcccCeEEEEeeCCCCCCEEEEEeCC
Q 022111           11 EDTVHDVAMDFYGKRLATASSDSSIKIIGLSNSASQHLAT-------L-----KGHRGPVWQVAWAHPKFGSILASCSYD   78 (302)
Q Consensus        11 ~~~v~~~~~s~~~~~l~s~~~d~~v~lw~~~~~~~~~~~~-------~-----~~h~~~v~~v~~~~~~~~~~l~s~s~D   78 (302)
                      ...|.++..+.+|.+. .|...+-|.+++...........       .     ......|.++....  .|.+ -.|..+
T Consensus       257 ~~~i~~i~~d~~g~lW-igt~~~Gl~~~~~~~~~~~~~~~~~f~~~~~~~~~~~l~~~~v~~i~~D~--~g~l-Wigt~~  332 (781)
T 3v9f_A          257 SSYIFSIKQLKDNKLW-IATELNGIMILDLQQNQFLLPEQIRFEFIREGDNNYSLSNASARYIFQDS--FNNI-WIGTWG  332 (781)
T ss_dssp             CCCEEEEEECTTSEEE-EEESSSCEEEEETTCC---------CEEECBCSSTTSBSSSCEEEEEECS--SCCE-EEEEBS
T ss_pred             CceEEEEEECCCCCEE-EEeCCCCeEEECCCCCeeeeeeccccccccCCCCCCCCCCCeEEEEEEeC--CCCE-EEEecC
Confidence            3468888888888644 45664567888765432221111       0     11345688887643  3554 456666


Q ss_pred             CeEEEEEcCCCCceeEEEE-------ecCCCCCeeEEEecCCCCCcEEEEEecCCcEEEEEecCCCCeeeeee-cccCCC
Q 022111           79 GQVIIWKEGNQNDWTQAHT-------FNDHKSSVNSIAWAPHELGLSLACGSSDGNISVFTATADGGWDTTRI-DQAHPV  150 (302)
Q Consensus        79 ~~i~iwd~~~~~~~~~~~~-------~~~h~~~i~~l~~~pd~~~~~l~sg~~d~~v~~~~~~~~~~~~~~~~-~~~h~~  150 (302)
                      +-|..++..... ......       .......|.++...++  +. |-.|+.++-+..|+.... .+..... ......
T Consensus       333 ~Gl~~~~~~~~~-~~~~~~~~~~~~~~~l~~~~v~~i~~d~~--g~-lWigt~~~Gl~~~~~~~~-~~~~~~~~~~~~~~  407 (781)
T 3v9f_A          333 GGINFISNAPPT-FHTWSYSPTQMNESSLSNKVVSSVCDDGQ--GK-LWIGTDGGGINVFENGKR-VAIYNKENRELLSN  407 (781)
T ss_dssp             SCEEEECSSCCS-CEEEC----CCCSSCCSSSCEEEEEECTT--SC-EEEEEBSSCEEEEETTEE-EEECC-----CCCS
T ss_pred             CeEEEeCCCCCc-ceeeccCccccccCCCCCcceEEEEEcCC--CC-EEEEeCCCcEEEEECCCC-eEEEccCCCCCCCc
Confidence            678888765432 111110       0112356888877654  44 445565666777765321 1110000 001123


Q ss_pred             CeEEEEeCCCCCCCceeecccCCCceeEEEeeCCCcEEEEEEecCccccccccccccCCCceeEEEeeCCCCCCccEEEE
Q 022111          151 GVTSVSWAPAMAPGALVGLGLLDPVQKLASCGCDNTVKVWKMYNGIWKMDCFPALQMHSDWVRSVAWAPNLGLPKSTIAS  230 (302)
Q Consensus       151 ~v~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~D~~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~l~s  230 (302)
                      .|.++...+.               ..|-.|+.++-+..+|..++...  .+.........|.++...+++    . |-.
T Consensus       408 ~v~~i~~d~~---------------g~lWigt~~~Gl~~~~~~~~~~~--~~~~~~~~~~~v~~i~~d~~g----~-lwi  465 (781)
T 3v9f_A          408 SVLCSLKDSE---------------GNLWFGTYLGNISYYNTRLKKFQ--IIELEKNELLDVRVFYEDKNK----K-IWI  465 (781)
T ss_dssp             BEEEEEECTT---------------SCEEEEETTEEEEEECSSSCEEE--ECCSTTTCCCCEEEEEECTTS----E-EEE
T ss_pred             ceEEEEECCC---------------CCEEEEeccCCEEEEcCCCCcEE--EeccCCCCCCeEEEEEECCCC----C-EEE
Confidence            3555544322               34555666666888887654221  111101234678998877764    3 444


Q ss_pred             EecCCeEEEEEeccCCcceeeeee-c---cCCCcEEEEEEccCCCEEEEecCCceEEeeecCCceEEE
Q 022111          231 ASQDGTVVIWTCAKEGEQWEGRVL-K---DFKTPVWSVSWSLTGNLLAVADANNVTLWKEAVDGEWQQ  294 (302)
Q Consensus       231 ~s~D~~i~iwd~~~~~~~~~~~~~-~---~~~~~v~~~~~spdg~~la~~~~d~i~~w~~~~~~~~~~  294 (302)
                      |+. +.|..+|.....  +..... .   .....|.++...++|++.+....+++..++.. .+.+..
T Consensus       466 gt~-~Gl~~~~~~~~~--~~~~~~~~~~~~~~~~i~~i~~d~~g~lWigt~~~Gl~~~~~~-~~~~~~  529 (781)
T 3v9f_A          466 GTH-AGVFVIDLASKK--VIHHYDTSNSQLLENFVRSIAQDSEGRFWIGTFGGGVGIYTPD-MQLVRK  529 (781)
T ss_dssp             EET-TEEEEEESSSSS--CCEEECTTTSSCSCSCEEEEEECTTCCEEEEESSSCEEEECTT-CCEEEE
T ss_pred             EEC-CceEEEeCCCCe--EEecccCcccccccceeEEEEEcCCCCEEEEEcCCCEEEEeCC-CCeEEE
Confidence            555 568888876432  111110 1   11356899999999988766654678888753 234443

>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}

Probab=96.20  E-value=0.61  Score=41.28  Aligned_cols=159  Identities=8%  Similarity=0.092  Sum_probs=78.5

Q ss_pred             eEEEEeeCC-CCCCEEEEEeCCCeEEEEEcCCCCceeEEEEecCCCCCeeEEEecCCCCCcEEEEEecCC--cEEEEEec
Q 022111           58 VWQVAWAHP-KFGSILASCSYDGQVIIWKEGNQNDWTQAHTFNDHKSSVNSIAWAPHELGLSLACGSSDG--NISVFTAT  134 (302)
Q Consensus        58 v~~v~~~~~-~~~~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~h~~~i~~l~~~pd~~~~~l~sg~~d~--~v~~~~~~  134 (302)
                      -..|+|.++ ..+.++++-.. +.|+.+|+.++    .+..+.........+++.++  +.++++.....  .-.++...
T Consensus       141 P~gvavd~~s~~g~Lyv~D~~-~~I~~id~~~g----~v~~~~~~~~~P~giavd~d--G~lyVad~~~~~~~~gv~~~~  213 (433)
T 4hw6_A          141 IWRMMFDPNSNYDDLYWVGQR-DAFRHVDFVNQ----YVDIKTTNIGQCADVNFTLN--GDMVVVDDQSSDTNTGIYLFT  213 (433)
T ss_dssp             CCEEEECTTTTTCEEEEECBT-SCEEEEETTTT----EEEEECCCCSCEEEEEECTT--CCEEEEECCSCTTSEEEEEEC
T ss_pred             CceEEEccccCCCEEEEEeCC-CCEEEEECCCC----EEEEeecCCCCccEEEECCC--CCEEEEcCCCCcccceEEEEE
Confidence            346788652 23555544333 78888887654    23334444556889999988  44444432110  11122111


Q ss_pred             CCCCeee-eeecccCCCCeEEEEeCCCCCCCceeecccCCCceeEEEeeCCCcEEEEEEecCccccccccccccCCCcee
Q 022111          135 ADGGWDT-TRIDQAHPVGVTSVSWAPAMAPGALVGLGLLDPVQKLASCGCDNTVKVWKMYNGIWKMDCFPALQMHSDWVR  213 (302)
Q Consensus       135 ~~~~~~~-~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~D~~v~iwd~~~~~~~~~~~~~~~~h~~~v~  213 (302)
                      ..+.+.. ..+  ........+++.|.             ++.++++-..++.|+.+|..++..... +... +....-.
T Consensus       214 ~~~~~~~~~~~--~~~~~P~giavd~~-------------~G~lyv~d~~~~~V~~~d~~~g~~~~~-~~~~-~~~~~~~  276 (433)
T 4hw6_A          214 RASGFTERLSL--CNARGAKTCAVHPQ-------------NGKIYYTRYHHAMISSYDPATGTLTEE-EVMM-DTKGSNF  276 (433)
T ss_dssp             GGGTTCCEEEE--EECSSBCCCEECTT-------------TCCEEECBTTCSEEEEECTTTCCEEEE-EEEC-SCCSSCE
T ss_pred             CCCCeeccccc--cccCCCCEEEEeCC-------------CCeEEEEECCCCEEEEEECCCCeEEEE-Eecc-CCCCCcc
Confidence            1111110 000  00011122333331             235555655677788888764421001 1111 1122335


Q ss_pred             EEEeeCCCCCCccEEEEEecCCeEEEEEec
Q 022111          214 SVAWAPNLGLPKSTIASASQDGTVVIWTCA  243 (302)
Q Consensus       214 ~v~~~p~~~~~~~~l~s~s~D~~i~iwd~~  243 (302)
                      .|+|+|++   ....++-...+.|+.++..
T Consensus       277 ~ia~dpdG---~~LYvad~~~~~I~~~~~d  303 (433)
T 4hw6_A          277 HIVWHPTG---DWAYIIYNGKHCIYRVDYN  303 (433)
T ss_dssp             EEEECTTS---SEEEEEETTTTEEEEEEBC
T ss_pred             cEEEeCCC---CEEEEEeCCCCEEEEEeCC
Confidence            69999996   2356666778889988865

>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A

Probab=96.01  E-value=0.93  Score=41.71  Aligned_cols=74  Identities=14%  Similarity=0.166  Sum_probs=47.6

Q ss_pred             eeEEEeeCCCCCCccEEEEEecCCeEEEEEeccCCcce------eeeee--ccCCCcEEEEEEccCCCEEEEecCC-ceE
Q 022111          212 VRSVAWAPNLGLPKSTIASASQDGTVVIWTCAKEGEQW------EGRVL--KDFKTPVWSVSWSLTGNLLAVADAN-NVT  282 (302)
Q Consensus       212 v~~v~~~p~~~~~~~~l~s~s~D~~i~iwd~~~~~~~~------~~~~~--~~~~~~v~~~~~spdg~~la~~~~d-~i~  282 (302)
                      ..++.++||+   ...++++..+.+|.++|+.+.....      .....  .......+.++|+|+|...++..-+ .|.
T Consensus       279 PhGv~~sPDG---k~v~V~~~~s~~VsVid~~~~~~~~~~~l~~~~~v~~~v~vG~gP~h~aF~~dG~aY~t~~ldsqV~  355 (595)
T 1fwx_A          279 PHGCNMAPDK---KHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAEPELGLGPLHTAFDGRGNAYTSLFLDSQVV  355 (595)
T ss_dssp             CCCEEECTTS---SEEEEECTTSSBEEEEEGGGHHHHHHSCCCGGGGEEECCBCCSCEEEEEECTTSEEEEEETTTTEEE
T ss_pred             ceEEEEcCCC---CEEEEeCCCCCeEEEEECcccccccccccCcccceEEEcCCCCCcceEEECCCCeEEEEEecCCcEE
Confidence            4579999997   2456666678899999998531000      00011  1223458889999999444444445 699


Q ss_pred             EeeecC
Q 022111          283 LWKEAV  288 (302)
Q Consensus       283 ~w~~~~  288 (302)
                      .|+.+.
T Consensus       356 kwdi~~  361 (595)
T 1fwx_A          356 KWNIED  361 (595)
T ss_dssp             EEEHHH
T ss_pred             EEEhhH
Confidence            999754

>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}

Probab=95.99  E-value=0.65  Score=39.73  Aligned_cols=234  Identities=9%  Similarity=-0.061  Sum_probs=121.8

Q ss_pred             eeEEEEccCCCEEEEeeCCCcEEEEeecCCCceEEEEecCcccCeEEEEeeCCCCCCEEEEEeCCCeEEEEEcCCCCcee
Q 022111           14 VHDVAMDFYGKRLATASSDSSIKIIGLSNSASQHLATLKGHRGPVWQVAWAHPKFGSILASCSYDGQVIIWKEGNQNDWT   93 (302)
Q Consensus        14 v~~~~~s~~~~~l~s~~~d~~v~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~s~D~~i~iwd~~~~~~~~   93 (302)
                      .++....+++ +|+- +....|+..++......  ..+.+ ......++|.+. .+.++.+-...+.|..+++..... .
T Consensus        36 ~~C~~~~~~~-~ll~-~~~~~I~~i~~~g~~~~--~~~~~-~~~~~~l~~d~~-~~~ly~~D~~~~~I~r~~~~g~~~-~  108 (349)
T 3v64_C           36 RSCKALGPEP-VLLF-ANRIDIRQVLPHRSEYT--LLLNN-LENAIALDFHHR-RELVFWSDVTLDRILRANLNGSNV-E  108 (349)
T ss_dssp             SCEEESSSCC-EEEE-ECBSCEEEECTTSCCEE--EEECS-CSCEEEEEEETT-TTEEEEEETTTTEEEEEETTSCSC-E
T ss_pred             CcccccccCc-eeEe-ecccceEEEeCCCCeeE--EeecC-CCceEEEEEecc-ccEEEEEeccCCceEEEecCCCCc-e
Confidence            3444444433 3332 23455777776543222  22222 234678999754 356666766788888888765431 1


Q ss_pred             EEEEecCCCCCeeEEEecCCCCCcEEEEEecCCcEEEEEecCCCCeeeeeecccCCCCeEEEEeCCCCCCCceeecccCC
Q 022111           94 QAHTFNDHKSSVNSIAWAPHELGLSLACGSSDGNISVFTATADGGWDTTRIDQAHPVGVTSVSWAPAMAPGALVGLGLLD  173 (302)
Q Consensus        94 ~~~~~~~h~~~i~~l~~~pd~~~~~l~sg~~d~~v~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~  173 (302)
                        ..+.........+++.+.. +.+..+-...+.|.+.+....  .....+. ........++..|..            
T Consensus       109 --~~~~~~~~~p~glavd~~~-g~ly~~d~~~~~I~~~~~dG~--~~~~l~~-~~l~~P~~iavdp~~------------  170 (349)
T 3v64_C          109 --EVVSTGLESPGGLAVDWVH-DKLYWTDSGTSRIEVANLDGA--HRKVLLW-QSLEKPRAIALHPME------------  170 (349)
T ss_dssp             --EEECSSCSCCCEEEEETTT-TEEEEEETTTTEEEEEETTSC--SCEEEEC-TTCSCEEEEEEETTT------------
T ss_pred             --EEEeCCCCCccEEEEecCC-CeEEEEcCCCCeEEEEcCCCC--ceEEEEe-CCCCCcceEEEecCc------------
Confidence              1122223445778887653 444555555677877775422  1111111 222334667766643            


Q ss_pred             CceeEEEeeCC-CcEEEEEEecCccccccccccccCCCceeEEEeeCCCCCCccEEEEEecCCeEEEEEeccCCcceeee
Q 022111          174 PVQKLASCGCD-NTVKVWKMYNGIWKMDCFPALQMHSDWVRSVAWAPNLGLPKSTIASASQDGTVVIWTCAKEGEQWEGR  252 (302)
Q Consensus       174 ~~~~l~s~~~D-~~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~l~s~s~D~~i~iwd~~~~~~~~~~~  252 (302)
                       +..+++-... +.|..+++.....  ..+  ....-.+-+.|+++|++   +...++=+..+.|..+|++....   ..
T Consensus       171 -g~ly~td~~~~~~I~r~~~dG~~~--~~~--~~~~~~~PnGla~d~~~---~~lY~aD~~~~~I~~~~~dG~~~---~~  239 (349)
T 3v64_C          171 -GTIYWTDWGNTPRIEASSMDGSGR--RII--ADTHLFWPNGLTIDYAG---RRMYWVDAKHHVIERANLDGSHR---KA  239 (349)
T ss_dssp             -TEEEEEECSSSCEEEEEETTSCSC--EES--CCSSCSCEEEEEEETTT---TEEEEEETTTTEEEEEETTSCSC---EE
T ss_pred             -CeEEEeccCCCCEEEEEeCCCCCc--EEE--EECCCCCcceEEEeCCC---CEEEEEECCCCEEEEEeCCCCce---EE
Confidence             3455555544 6777777654311  111  11123356889999875   35666666778899988764321   12


Q ss_pred             eeccCCCcEEEEEEccCCCEEEEecCC--ceEEee
Q 022111          253 VLKDFKTPVWSVSWSLTGNLLAVADAN--NVTLWK  285 (302)
Q Consensus       253 ~~~~~~~~v~~~~~spdg~~la~~~~d--~i~~w~  285 (302)
                      +....-....++++ .++ .|..++..  .|...+
T Consensus       240 ~~~~~~~~P~giav-~~~-~ly~td~~~~~V~~~~  272 (349)
T 3v64_C          240 VISQGLPHPFAITV-FED-SLYWTDWHTKSINSAN  272 (349)
T ss_dssp             EECSSCSSEEEEEE-ETT-EEEEEETTTTEEEEEE
T ss_pred             EEeCCCCCceEEEE-ECC-EEEEecCCCCeEEEEE
Confidence            22222234567777 333 33334333  465554

>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*

Probab=95.77  E-value=0.73  Score=38.58  Aligned_cols=114  Identities=11%  Similarity=0.122  Sum_probs=61.7

Q ss_pred             ceeEEEEcc-CCCEEEEeeCCCcEEEEeecCCCceEEEE-ecCc-ccCeEEEEeeCCCCCCEEEEEeC------------
Q 022111           13 TVHDVAMDF-YGKRLATASSDSSIKIIGLSNSASQHLAT-LKGH-RGPVWQVAWAHPKFGSILASCSY------------   77 (302)
Q Consensus        13 ~v~~~~~s~-~~~~l~s~~~d~~v~lw~~~~~~~~~~~~-~~~h-~~~v~~v~~~~~~~~~~l~s~s~------------   77 (302)
                      .+..+++++ +++ |..+...+.+..++......+.+.. ..+. ......+++.+. +|++.++-..            
T Consensus        81 ~p~gi~~~~~~g~-l~v~d~~~~i~~~d~~~g~~~~~~~~~~~~~~~~p~~i~~d~~-~G~l~v~d~~~~~~~~~~~~~~  158 (322)
T 2fp8_A           81 RTYDISYNLQNNQ-LYIVDCYYHLSVVGSEGGHATQLATSVDGVPFKWLYAVTVDQR-TGIVYFTDVSTLYDDRGVQQIM  158 (322)
T ss_dssp             CEEEEEEETTTTE-EEEEETTTEEEEECTTCEECEEEESEETTEECSCEEEEEECTT-TCCEEEEESCSSCCTTCHHHHH
T ss_pred             CCceEEEcCCCCc-EEEEECCCCEEEEeCCCCEEEEecccCCCCcccccceEEEecC-CCEEEEECCcccccccccceeh
Confidence            467888987 565 4445555557777754321122211 1111 123567887641 3777666432            


Q ss_pred             -----CCeEEEEEcCCCCceeEEEEecCCCCCeeEEEecCCCCCcEEE-EEecCCcEEEEEec
Q 022111           78 -----DGQVIIWKEGNQNDWTQAHTFNDHKSSVNSIAWAPHELGLSLA-CGSSDGNISVFTAT  134 (302)
Q Consensus        78 -----D~~i~iwd~~~~~~~~~~~~~~~h~~~i~~l~~~pd~~~~~l~-sg~~d~~v~~~~~~  134 (302)
                           ++.|..+|..+..    ...+.........++|+|+  +..|. +-...+.|..|+..
T Consensus       159 ~~~~~~g~v~~~d~~~~~----~~~~~~~~~~p~gia~~~d--g~~lyv~d~~~~~I~~~~~~  215 (322)
T 2fp8_A          159 DTSDKTGRLIKYDPSTKE----TTLLLKELHVPGGAEVSAD--SSFVLVAEFLSHQIVKYWLE  215 (322)
T ss_dssp             HHTCCCEEEEEEETTTTE----EEEEEEEESCCCEEEECTT--SSEEEEEEGGGTEEEEEESS
T ss_pred             cccCCCceEEEEeCCCCE----EEEeccCCccCcceEECCC--CCEEEEEeCCCCeEEEEECC
Confidence                 3567777765432    1111111123567999998  54444 44556889888875

>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}

Probab=95.75  E-value=0.82  Score=39.07  Aligned_cols=179  Identities=8%  Similarity=-0.048  Sum_probs=95.0

Q ss_pred             CCeEEEEEcCCCCceeEEEEecCCCCCeeEEEecCCCCCcEEEEEecCCcEEEEEecCCCCeeeeeecccCCCCeEEEEe
Q 022111           78 DGQVIIWKEGNQNDWTQAHTFNDHKSSVNSIAWAPHELGLSLACGSSDGNISVFTATADGGWDTTRIDQAHPVGVTSVSW  157 (302)
Q Consensus        78 D~~i~iwd~~~~~~~~~~~~~~~h~~~i~~l~~~pd~~~~~l~sg~~d~~v~~~~~~~~~~~~~~~~~~~h~~~v~~~~~  157 (302)
                      ...|+..++.... ..  ..+. ....+..++|.+.. +.++.+-...+.|..++...... . ..+. ........+++
T Consensus        52 ~~~I~~i~~~g~~-~~--~~~~-~~~~~~~l~~d~~~-~~ly~~D~~~~~I~r~~~~g~~~-~-~~~~-~~~~~p~glav  123 (349)
T 3v64_C           52 RIDIRQVLPHRSE-YT--LLLN-NLENAIALDFHHRR-ELVFWSDVTLDRILRANLNGSNV-E-EVVS-TGLESPGGLAV  123 (349)
T ss_dssp             BSCEEEECTTSCC-EE--EEEC-SCSCEEEEEEETTT-TEEEEEETTTTEEEEEETTSCSC-E-EEEC-SSCSCCCEEEE
T ss_pred             ccceEEEeCCCCe-eE--Eeec-CCCceEEEEEeccc-cEEEEEeccCCceEEEecCCCCc-e-EEEe-CCCCCccEEEE
Confidence            3456666665432 11  1222 33457899998763 34444444556777666542211 1 1111 11112234444


Q ss_pred             CCCCCCCceeecccCCCceeEEEeeCCCcEEEEEEecCccccccccccccCCCceeEEEeeCCCCCCccEEEEEecC-Ce
Q 022111          158 APAMAPGALVGLGLLDPVQKLASCGCDNTVKVWKMYNGIWKMDCFPALQMHSDWVRSVAWAPNLGLPKSTIASASQD-GT  236 (302)
Q Consensus       158 ~~~~~~~~~~~~~~~~~~~~l~s~~~D~~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~l~s~s~D-~~  236 (302)
                      .+..             +.++++-...+.|.+.++...... ..   +...-...+.|++.|.+   +..+.+-... +.
T Consensus       124 d~~~-------------g~ly~~d~~~~~I~~~~~dG~~~~-~l---~~~~l~~P~~iavdp~~---g~ly~td~~~~~~  183 (349)
T 3v64_C          124 DWVH-------------DKLYWTDSGTSRIEVANLDGAHRK-VL---LWQSLEKPRAIALHPME---GTIYWTDWGNTPR  183 (349)
T ss_dssp             ETTT-------------TEEEEEETTTTEEEEEETTSCSCE-EE---ECTTCSCEEEEEEETTT---TEEEEEECSSSCE
T ss_pred             ecCC-------------CeEEEEcCCCCeEEEEcCCCCceE-EE---EeCCCCCcceEEEecCc---CeEEEeccCCCCE
Confidence            4321             355666666778888887643211 11   11222346889999964   3556665555 77


Q ss_pred             EEEEEeccCCcceeeeeeccCCCcEEEEEEccCCCEEEEecCC--ceEEeeec
Q 022111          237 VVIWTCAKEGEQWEGRVLKDFKTPVWSVSWSLTGNLLAVADAN--NVTLWKEA  287 (302)
Q Consensus       237 i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~la~~~~d--~i~~w~~~  287 (302)
                      |...+++....   ..+....-.....++|+|++..|-.++..  .|..++..
T Consensus       184 I~r~~~dG~~~---~~~~~~~~~~PnGla~d~~~~~lY~aD~~~~~I~~~~~d  233 (349)
T 3v64_C          184 IEASSMDGSGR---RIIADTHLFWPNGLTIDYAGRRMYWVDAKHHVIERANLD  233 (349)
T ss_dssp             EEEEETTSCSC---EESCCSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETT
T ss_pred             EEEEeCCCCCc---EEEEECCCCCcceEEEeCCCCEEEEEECCCCEEEEEeCC
Confidence            77777654321   11212222356899999987777676554  46666653

>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}

Probab=95.73  E-value=0.71  Score=38.20  Aligned_cols=234  Identities=16%  Similarity=0.261  Sum_probs=110.2

Q ss_pred             CCCEEEEeeCC----CcEEEEeecCCCceEEEEecCcccCeEEEEeeCCCCCCEEEEEeCC-----CeEEEEEcCCCCce
Q 022111           22 YGKRLATASSD----SSIKIIGLSNSASQHLATLKGHRGPVWQVAWAHPKFGSILASCSYD-----GQVIIWKEGNQNDW   92 (302)
Q Consensus        22 ~~~~l~s~~~d----~~v~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~s~D-----~~i~iwd~~~~~~~   92 (302)
                      ++..++.||.+    ..+..||........+..+......- ++...   ++.+++.|+.+     ..+.+||+.+. .|
T Consensus        15 ~~~i~v~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~-~~~~~---~~~lyv~GG~~~~~~~~~~~~~d~~~~-~W   89 (302)
T 2xn4_A           15 PKLMVVVGGQAPKAIRSVECYDFKEERWHQVAELPSRRCRA-GMVYM---AGLVFAVGGFNGSLRVRTVDSYDPVKD-QW   89 (302)
T ss_dssp             CEEEEEECCBSSSBCCCEEEEETTTTEEEEECCCSSCCBSC-EEEEE---TTEEEEESCBCSSSBCCCEEEEETTTT-EE
T ss_pred             CCEEEEECCCCCCCCCcEEEEcCcCCcEeEcccCCcccccc-eEEEE---CCEEEEEeCcCCCccccceEEECCCCC-ce
Confidence            34566677754    35778887654443332222111111 12222   25677777754     34778887653 45


Q ss_pred             eEEEEecCCCCCeeEEEecCCCCCcEEEEEecCC-----cEEEEEecCCCCeeeeeecccCCCCeEEEEeCCCCCCCcee
Q 022111           93 TQAHTFNDHKSSVNSIAWAPHELGLSLACGSSDG-----NISVFTATADGGWDTTRIDQAHPVGVTSVSWAPAMAPGALV  167 (302)
Q Consensus        93 ~~~~~~~~h~~~i~~l~~~pd~~~~~l~sg~~d~-----~v~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~  167 (302)
                      ..+..+......-..+.+  +  +.+++.|+.++     .+.+||..+ ..|...............+.+          
T Consensus        90 ~~~~~~p~~r~~~~~~~~--~--~~iyv~GG~~~~~~~~~~~~~d~~~-~~W~~~~~~p~~r~~~~~~~~----------  154 (302)
T 2xn4_A           90 TSVANMRDRRSTLGAAVL--N--GLLYAVGGFDGSTGLSSVEAYNIKS-NEWFHVAPMNTRRSSVGVGVV----------  154 (302)
T ss_dssp             EEECCCSSCCBSCEEEEE--T--TEEEEEEEECSSCEEEEEEEEETTT-TEEEEECCCSSCCBSCEEEEE----------
T ss_pred             eeCCCCCccccceEEEEE--C--CEEEEEcCCCCCccCceEEEEeCCC-CeEeecCCCCCcccCceEEEE----------
Confidence            554433221111222323  2  45666776553     355566542 234321100000000111111          


Q ss_pred             ecccCCCceeEEEeeCC-------CcEEEEEEecCcccccc-cc-ccccCCCceeEEEeeCCCCCCccEEEEEecCC---
Q 022111          168 GLGLLDPVQKLASCGCD-------NTVKVWKMYNGIWKMDC-FP-ALQMHSDWVRSVAWAPNLGLPKSTIASASQDG---  235 (302)
Q Consensus       168 ~~~~~~~~~~l~s~~~D-------~~v~iwd~~~~~~~~~~-~~-~~~~h~~~v~~v~~~p~~~~~~~~l~s~s~D~---  235 (302)
                            +++.++.||.+       ..+.+||+.+..|.... .. ...+|    ..+.+  +    +..++.|+.++   
T Consensus       155 ------~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~----~~~~~--~----~~iyv~GG~~~~~~  218 (302)
T 2xn4_A          155 ------GGLLYAVGGYDVASRQCLSTVECYNATTNEWTYIAEMSTRRSGA----GVGVL--N----NLLYAVGGHDGPLV  218 (302)
T ss_dssp             ------TTEEEEECCEETTTTEECCCEEEEETTTTEEEEECCCSSCCBSC----EEEEE--T----TEEEEECCBSSSSB
T ss_pred             ------CCEEEEEeCCCCCCCccccEEEEEeCCCCcEEECCCCccccccc----cEEEE--C----CEEEEECCCCCCcc
Confidence                  23566666542       34888998877665311 11 11122    12222  2    36677776543   


Q ss_pred             --eEEEEEeccCCcceeeeeecc-CCCcEEEEEEccCCCEEEEecCC------ceEEeeecCCceEEEee
Q 022111          236 --TVVIWTCAKEGEQWEGRVLKD-FKTPVWSVSWSLTGNLLAVADAN------NVTLWKEAVDGEWQQVS  296 (302)
Q Consensus       236 --~i~iwd~~~~~~~~~~~~~~~-~~~~v~~~~~spdg~~la~~~~d------~i~~w~~~~~~~~~~~~  296 (302)
                        .+.+||....  .|....... .......+.  .++++++.|+.+      .+.+||.. ..+|.+..
T Consensus       219 ~~~~~~yd~~~~--~W~~~~~~~~~r~~~~~~~--~~~~i~v~GG~~~~~~~~~v~~yd~~-~~~W~~~~  283 (302)
T 2xn4_A          219 RKSVEVYDPTTN--AWRQVADMNMCRRNAGVCA--VNGLLYVVGGDDGSCNLASVEYYNPT-TDKWTVVS  283 (302)
T ss_dssp             CCCEEEEETTTT--EEEEECCCSSCCBSCEEEE--ETTEEEEECCBCSSSBCCCEEEEETT-TTEEEECS
T ss_pred             cceEEEEeCCCC--CEeeCCCCCCccccCeEEE--ECCEEEEECCcCCCcccccEEEEcCC-CCeEEECC
Confidence              5788887653  353211000 011111222  267787887643      37888864 46899875

>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}

Probab=95.64  E-value=0.99  Score=39.17  Aligned_cols=198  Identities=8%  Similarity=-0.059  Sum_probs=104.0

Q ss_pred             ceeEEEEccCCCEEE-EeeCCCcEEEEeecCCCceEEEEecCcccCeEEEEeeCCCCCCEEEEEeCCCeEEEEEcCCCCc
Q 022111           13 TVHDVAMDFYGKRLA-TASSDSSIKIIGLSNSASQHLATLKGHRGPVWQVAWAHPKFGSILASCSYDGQVIIWKEGNQND   91 (302)
Q Consensus        13 ~v~~~~~s~~~~~l~-s~~~d~~v~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~s~D~~i~iwd~~~~~~   91 (302)
                      ....++|++.+..|. +-...+.|+.++......+.+  +.........+++.+. .+.++++-...+.|.+.++.....
T Consensus       117 ~~~gl~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~--~~~~~~~p~glavd~~-~g~lY~~d~~~~~I~~~~~dg~~~  193 (386)
T 3v65_B          117 NAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEV--VSTGLESPGGLAVDWV-HDKLYWTDSGTSRIEVANLDGAHR  193 (386)
T ss_dssp             CEEEEEEETTTTEEEEEETTTTEEEEEETTSCCEEEE--ECSSCSCCCCEEEETT-TTEEEEEETTTTEEEECBTTSCSC
T ss_pred             ccEEEEEecCCCeEEEEeCCCCcEEEEecCCCCcEEE--EeCCCCCccEEEEEeC-CCeEEEEcCCCCeEEEEeCCCCce
Confidence            355688886555444 434557777777654322221  2211223346777543 366667777778888888754321


Q ss_pred             eeEEEEecCCCCCeeEEEecCCCCCcEEEEEecC-CcEEEEEecCCCCeeeeeecccCCCCeEEEEeCCCCCCCceeecc
Q 022111           92 WTQAHTFNDHKSSVNSIAWAPHELGLSLACGSSD-GNISVFTATADGGWDTTRIDQAHPVGVTSVSWAPAMAPGALVGLG  170 (302)
Q Consensus        92 ~~~~~~~~~h~~~i~~l~~~pd~~~~~l~sg~~d-~~v~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~  170 (302)
                         ...+.........+++.|.. +.+..+-... +.|..++..  +........ .....-..++++|..         
T Consensus       194 ---~~l~~~~l~~P~giavdp~~-g~ly~td~~~~~~I~r~~~d--G~~~~~~~~-~~~~~PnGlavd~~~---------  257 (386)
T 3v65_B          194 ---KVLLWQSLEKPRAIALHPME-GTIYWTDWGNTPRIEASSMD--GSGRRIIAD-THLFWPNGLTIDYAG---------  257 (386)
T ss_dssp             ---EEEECSSCSCEEEEEEETTT-TEEEEEECSSSCEEEEEETT--SCSCEEEEC-SSCSCEEEEEEEGGG---------
T ss_pred             ---EEeecCCCCCCcEEEEEcCC-CeEEEeccCCCCEEEEEeCC--CCCcEEEEE-CCCCCeeeEEEeCCC---------
Confidence               11122234567899998863 4444443333 556655543  221111111 112234677777643         


Q ss_pred             cCCCceeEEEeeCCCcEEEEEEecCccccccccccccCCCceeEEEeeCCCCCCccEEEEEecCCeEEEEEe
Q 022111          171 LLDPVQKLASCGCDNTVKVWKMYNGIWKMDCFPALQMHSDWVRSVAWAPNLGLPKSTIASASQDGTVVIWTC  242 (302)
Q Consensus       171 ~~~~~~~l~s~~~D~~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~l~s~s~D~~i~iwd~  242 (302)
                          +.++++-+..+.|..+|+..... ...   +.........|++..     +..+.+-...+.|..++.
T Consensus       258 ----~~lY~aD~~~~~I~~~d~dG~~~-~~~---~~~~~~~P~giav~~-----~~ly~td~~~~~V~~~~~  316 (386)
T 3v65_B          258 ----RRMYWVDAKHHVIERANLDGSHR-KAV---ISQGLPHPFAITVFE-----DSLYWTDWHTKSINSANK  316 (386)
T ss_dssp             ----TEEEEEETTTTEEEEECTTSCSC-EEE---ECSSCSSEEEEEEET-----TEEEEEETTTTEEEEEET
T ss_pred             ----CEEEEEECCCCEEEEEeCCCCee-EEE---EECCCCCceEEEEEC-----CEEEEeeCCCCeEEEEEC
Confidence                35566666677888888754311 111   111123345666632     245666666777777763

>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*

Probab=95.64  E-value=0.93  Score=38.88  Aligned_cols=104  Identities=14%  Similarity=0.117  Sum_probs=56.1

Q ss_pred             ceeEEEEccCCCEEEEeeCCCcEEEEeecCCCceEEEEec---CcccCeEEEEeeCC--CCCCEEEEEeC---C----Ce
Q 022111           13 TVHDVAMDFYGKRLATASSDSSIKIIGLSNSASQHLATLK---GHRGPVWQVAWAHP--KFGSILASCSY---D----GQ   80 (302)
Q Consensus        13 ~v~~~~~s~~~~~l~s~~~d~~v~lw~~~~~~~~~~~~~~---~h~~~v~~v~~~~~--~~~~~l~s~s~---D----~~   80 (302)
                      ....++|.++|++++ +..++.|++++.. +. +.+..+.   ........|+|.++  +++.+.++-+.   +    ..
T Consensus        30 ~P~~ia~~pdG~l~V-~e~~g~I~~~d~~-G~-~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lyv~~~~~~~~~~~~~~  106 (354)
T 3a9g_A           30 VPWSIAPLGGGRYLV-TERPGRLVLISPS-GK-KLVASFDVANVGEAGLLGLALHPEFPKKSWVYLYASYFAEGGHIRNR  106 (354)
T ss_dssp             CEEEEEEEETTEEEE-EETTTEEEEECSS-CE-EEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEEECGGGCEEEE
T ss_pred             CCeEEEEcCCCeEEE-EeCCCEEEEEeCC-Cc-eEeeccceeecCCCceeeEEeCCCCCcCCEEEEEEeccCCCCCcceE
Confidence            456789999997555 5677989888632 22 3333221   12345778999753  12455555443   3    45


Q ss_pred             EEEEEcCCCC-ce---eE-EEEec-CCCCCeeEEEecCCCCCcEEEE
Q 022111           81 VIIWKEGNQN-DW---TQ-AHTFN-DHKSSVNSIAWAPHELGLSLAC  121 (302)
Q Consensus        81 i~iwd~~~~~-~~---~~-~~~~~-~h~~~i~~l~~~pd~~~~~l~s  121 (302)
                      |..++..... ..   +. +..+. ...+....++|.||  |.+.++
T Consensus       107 v~r~~~~~~~~~~~~~~~l~~~~~~~~~h~~~~l~~~pD--G~Lyvt  151 (354)
T 3a9g_A          107 VIRGRLDGSTFKLKEVKTLIDGIPGAYIHNGGRIRFGPD--GMLYIT  151 (354)
T ss_dssp             EEEEEECSSSCCEEEEEEEEEEEECCSSCCCCCEEECTT--SCEEEE
T ss_pred             EEEEEECCCCcCcCccEEEEEcCCCCCCcCCceEEECCC--CcEEEE
Confidence            6666664321 11   11 11122 11223577999998  544444

>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*

Probab=95.50  E-value=1.1  Score=38.63  Aligned_cols=102  Identities=12%  Similarity=0.093  Sum_probs=59.7

Q ss_pred             CCcEEEEEEecCccccccccccccC-CCceeEEEeeCCCCCCccEEEEEec---C------------CeEEEEEeccCCc
Q 022111          184 DNTVKVWKMYNGIWKMDCFPALQMH-SDWVRSVAWAPNLGLPKSTIASASQ---D------------GTVVIWTCAKEGE  247 (302)
Q Consensus       184 D~~v~iwd~~~~~~~~~~~~~~~~h-~~~v~~v~~~p~~~~~~~~l~s~s~---D------------~~i~iwd~~~~~~  247 (302)
                      +..|.+|++.........+.++.+. -...+++...|++    .+.++...   |            ..=++|.+... .
T Consensus       138 ~s~ielf~~d~~~~~~~~~~~~~g~~~~~pND~~v~~~G----~fyvt~~~~ftd~~~~~~e~~~~~~~g~vyr~d~~-~  212 (355)
T 3sre_A          138 SSTVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAVGPE----HFYATNDHYFIDPYLKSWEMHLGLAWSFVTYYSPN-D  212 (355)
T ss_dssp             CCEEEEEEEETTTTEEEEEEEECCTTCSSEEEEEEEETT----EEEEEESCSCSSHHHHHHHHHTTCCCEEEEEECTT-C
T ss_pred             CCeEEEEEEECCCCEEEEEeccccCCCCCCceEEEeCCC----CEEecCCcEeCCcccccchhhccCCccEEEEEECC-e
Confidence            5678899987643333333344432 2347899999885    56666541   1            22344444321 1


Q ss_pred             ceeeeeeccCCCcEEEEEEccCCCEEEEecCC--ceEEeeecCCceEE
Q 022111          248 QWEGRVLKDFKTPVWSVSWSLTGNLLAVADAN--NVTLWKEAVDGEWQ  293 (302)
Q Consensus       248 ~~~~~~~~~~~~~v~~~~~spdg~~la~~~~d--~i~~w~~~~~~~~~  293 (302)
                         ...+.+.-...+.++|||||+.|.++...  .|..|+...+|...
T Consensus       213 ---~~~~~~~l~~pNGia~spDg~~lYvadt~~~~I~~~~~~~~g~l~  257 (355)
T 3sre_A          213 ---VRVVAEGFDFANGINISPDGKYVYIAELLAHKIHVYEKHANWTLT  257 (355)
T ss_dssp             ---CEEEEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSCEE
T ss_pred             ---EEEeecCCcccCcceECCCCCEEEEEeCCCCeEEEEEECCCCcEe
Confidence               11222222346889999999988887654  68888876666544

>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A

Probab=95.48  E-value=0.96  Score=39.84  Aligned_cols=105  Identities=15%  Similarity=0.158  Sum_probs=62.9

Q ss_pred             CeEEEEeCCCCCCCceeecccCCCceeEEEeeCCCcEEEEEEecCccccc------cc--cccc------cCCCceeEEE
Q 022111          151 GVTSVSWAPAMAPGALVGLGLLDPVQKLASCGCDNTVKVWKMYNGIWKMD------CF--PALQ------MHSDWVRSVA  216 (302)
Q Consensus       151 ~v~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~D~~v~iwd~~~~~~~~~------~~--~~~~------~h~~~v~~v~  216 (302)
                      .+..+..+|+              |.+||..+ +..|.|-.+..+.....      .+  +.+.      .....|..+.
T Consensus        67 ~i~qlvlSps--------------G~lLAl~g-~~~V~Vv~LP~~~~~~~~~~~~~~~q~~ty~l~~~~~~~~s~I~qVl  131 (452)
T 3pbp_A           67 DTFHVISSTS--------------GDLLCLFN-DNEIFVMEVPWGYSNVEDVSIQDAFQIFHYSIDEEEVGPKSSIKKVL  131 (452)
T ss_dssp             TTCEEEECTT--------------SSEEEEEC-SSEEEEEECCTTCSCCCCHHHHHTTEEEEEEGGGCC--CCCCEEEEE
T ss_pred             ceeEEEECCC--------------CCEEEEec-CCeEEEEEecCccccCcccccccccceeEEEcCCcccCCCCceeEEE
Confidence            3556666765              35666665 45788888763321111      00  1111      1357899999


Q ss_pred             eeCCCCCCccEEEEEecCCeEEEEEeccCC-cceee-eeeccC-----CCcEEEEEEccCCC
Q 022111          217 WAPNLGLPKSTIASASQDGTVVIWTCAKEG-EQWEG-RVLKDF-----KTPVWSVSWSLTGN  271 (302)
Q Consensus       217 ~~p~~~~~~~~l~s~s~D~~i~iwd~~~~~-~~~~~-~~~~~~-----~~~v~~~~~spdg~  271 (302)
                      |||-+ ..+..|++-..|+.||+||+.... .+... .....+     ...|.+++|.++|-
T Consensus       132 WHPl~-~~ds~LVVLtsD~~Ir~yDl~~s~~~P~~L~k~~~~fg~d~~~~ev~S~~Fg~~~l  192 (452)
T 3pbp_A          132 FHPKS-YRDSCIVVLKEDDTITMFDILNSQEKPIVLNKPNNSFGLDARVNDITDLEFSKDGL  192 (452)
T ss_dssp             ECTTB-GGGCEEEEEETTSCEEEEETTCTTSCCEEESCCCSEEESCSSCCCEEEEEECTTSS
T ss_pred             ecccc-CCCCeEEEEecCCEEEEEEcccCCCCCcchhccccccCCCcccceEEEEEEcCCCc
Confidence            99975 346799999999999999997521 11100 000111     14678888888663

>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}

Probab=95.33  E-value=1.1  Score=37.94  Aligned_cols=168  Identities=8%  Similarity=0.028  Sum_probs=91.2

Q ss_pred             ecCCCCCeeEEEecCCCCCcEEEEEecCCcEEEEEecCCCCeeeeeecc-c--C--CCCeEEEEe---CCCCCCCceeec
Q 022111           98 FNDHKSSVNSIAWAPHELGLSLACGSSDGNISVFTATADGGWDTTRIDQ-A--H--PVGVTSVSW---APAMAPGALVGL  169 (302)
Q Consensus        98 ~~~h~~~i~~l~~~pd~~~~~l~sg~~d~~v~~~~~~~~~~~~~~~~~~-~--h--~~~v~~~~~---~~~~~~~~~~~~  169 (302)
                      +...+....+++|.+.. +.++++.-..++|..|+......... .+.. .  .  ...+..+.|   .|.         
T Consensus         8 ~~~~~~yPE~~~wd~~~-g~~~vs~l~~g~V~~~~~~~~~~~~~-~~~~~s~~g~~~~~~sGl~~~~~D~~---------   76 (334)
T 2p9w_A            8 VKVKNLTPEDTIYDRTR-QVFYQSNLYKGRIEVYNPKTQSHFNV-VIDGASSNGDGEQQMSGLSLLTHDNS---------   76 (334)
T ss_dssp             ECCTTCCCSCEEEETTT-TEEEEEETTTTEEEEECTTTCCEEEE-CCTTTCCSSCCSEEEEEEEESSSSSC---------
T ss_pred             ecCcccCCcCccCcCCC-CEEEEEeccCCEEEEEcCCCCeEEEE-ecCCccccCCCcceeeEEEEeccCCC---------
Confidence            34455566788898753 44444444789999997643222222 2211 0  0  112456777   343         


Q ss_pred             ccCCCceeEEEee-------------CCCcEEEEEEe---cCccc--cccccc------cccCC-CceeEEEeeCCCCCC
Q 022111          170 GLLDPVQKLASCG-------------CDNTVKVWKMY---NGIWK--MDCFPA------LQMHS-DWVRSVAWAPNLGLP  224 (302)
Q Consensus       170 ~~~~~~~~l~s~~-------------~D~~v~iwd~~---~~~~~--~~~~~~------~~~h~-~~v~~v~~~p~~~~~  224 (302)
                           +.+++..-             .++.|..+|+.   ++...  ...-..      ..+.. ...++++..++|   
T Consensus        77 -----grL~vv~~~~~af~~~g~~~~g~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~~G---  148 (334)
T 2p9w_A           77 -----KRLFAVMKNAKSFNFADQSSHGASSFHSFNLPLSENSKPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQDRDG---  148 (334)
T ss_dssp             -----CEEEEEEEETTTTCTTSCCSSSCCEEEEEESSCCTTCCCSEEEESHHHHHHHHHHHSSCCEEEEEEEECTTS---
T ss_pred             -----CcEEEEEcccccccccccccCCCCEEEEEcCCcCCCCCEEEEecCccccccccccccccccCCceeEECCCC---
Confidence                 24444322             26778899988   44211  110000      00111 247889998885   


Q ss_pred             ccEEEEEecC-CeEEEEEeccCCcceeeeeeccC-----CCcEEEEEEccCCCEEEEecCC-ceEEeeecC
Q 022111          225 KSTIASASQD-GTVVIWTCAKEGEQWEGRVLKDF-----KTPVWSVSWSLTGNLLAVADAN-NVTLWKEAV  288 (302)
Q Consensus       225 ~~~l~s~s~D-~~i~iwd~~~~~~~~~~~~~~~~-----~~~v~~~~~spdg~~la~~~~d-~i~~w~~~~  288 (302)
                       +.-++++.. +.|...+.+..  ... .....+     ......|+++|+|+.|++.... .+..+|+..
T Consensus       149 -naYVt~s~~~~~I~rV~pdG~--~~~-~~~~~~~~~~~~~G~nGIv~~pdg~~Liv~~~~g~L~~fD~~~  215 (334)
T 2p9w_A          149 -NSYVAFALGMPAIARVSADGK--TVS-TFAWESGNGGQRPGYSGITFDPHSNKLIAFGGPRALTAFDVSK  215 (334)
T ss_dssp             -CEEEEEEESSCEEEEECTTSC--CEE-EEEECCCCSSSCCSCSEEEEETTTTEEEEESSSSSEEEEECSS
T ss_pred             -CEEEeCCCCCCeEEEEeCCCC--EEe-eeeecCCCcccccCcceEEEeCCCCEEEEEcCCCeEEEEcCCC
Confidence             677778777 76544443321  111 111111     1225689999999999888666 588888653

>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}

Probab=95.24  E-value=1.1  Score=37.06  Aligned_cols=239  Identities=14%  Similarity=0.178  Sum_probs=112.4

Q ss_pred             cCCCEEEEee-CC-----CcEEEEeecCCCceEEEEecCcccCeEEEEeeCCCCCCEEEEEeCC-----CeEEEEEcCCC
Q 022111           21 FYGKRLATAS-SD-----SSIKIIGLSNSASQHLATLKGHRGPVWQVAWAHPKFGSILASCSYD-----GQVIIWKEGNQ   89 (302)
Q Consensus        21 ~~~~~l~s~~-~d-----~~v~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~s~D-----~~i~iwd~~~~   89 (302)
                      .++..++.|| .+     ..+.+||........+..+......-..+.+    ++.+++.|+.+     ..+.+||+.+.
T Consensus        13 ~~~~i~~~GG~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~----~~~l~v~GG~~~~~~~~~~~~~d~~~~   88 (301)
T 2vpj_A           13 ANEVLLVVGGFGSQQSPIDVVEKYDPKTQEWSFLPSITRKRRYVASVSL----HDRIYVIGGYDGRSRLSSVECLDYTAD   88 (301)
T ss_dssp             CCEEEEEECCEETTTEECCCEEEEETTTTEEEECCCCSSCCBSCEEEEE----TTEEEEECCBCSSCBCCCEEEEETTCC
T ss_pred             CCCEEEEEeCccCCCcceeEEEEEcCCCCeEEeCCCCChhhccccEEEE----CCEEEEEcCCCCCccCceEEEEECCCC
Confidence            3456777777 33     3577888765443333323221111112222    25677777755     45788888654


Q ss_pred             C--ceeEEEEecCCCCCeeEEEecCCCCCcEEEEEecC-----CcEEEEEecCCCCeeeeeecccCCCCeEEEEeCCCCC
Q 022111           90 N--DWTQAHTFNDHKSSVNSIAWAPHELGLSLACGSSD-----GNISVFTATADGGWDTTRIDQAHPVGVTSVSWAPAMA  162 (302)
Q Consensus        90 ~--~~~~~~~~~~h~~~i~~l~~~pd~~~~~l~sg~~d-----~~v~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~  162 (302)
                      .  .|..+..+......-..+.+  +  +.+++.|+.+     +.+.+||..+ ..|...............+..     
T Consensus        89 ~~~~W~~~~~~p~~r~~~~~~~~--~--~~lyv~GG~~~~~~~~~~~~~d~~~-~~W~~~~~~p~~r~~~~~~~~-----  158 (301)
T 2vpj_A           89 EDGVWYSVAPMNVRRGLAGATTL--G--DMIYVSGGFDGSRRHTSMERYDPNI-DQWSMLGDMQTAREGAGLVVA-----  158 (301)
T ss_dssp             TTCCCEEECCCSSCCBSCEEEEE--T--TEEEEECCBCSSCBCCEEEEEETTT-TEEEEEEECSSCCBSCEEEEE-----
T ss_pred             CCCeeEECCCCCCCccceeEEEE--C--CEEEEEcccCCCcccceEEEEcCCC-CeEEECCCCCCCcccceEEEE-----
Confidence            2  15554333222112222222  2  4566666644     3466677543 234322110000000111111     


Q ss_pred             CCceeecccCCCceeEEEeeCC-----CcEEEEEEecCccccccccccccCCCceeEEEeeCCCCCCccEEEEEecC---
Q 022111          163 PGALVGLGLLDPVQKLASCGCD-----NTVKVWKMYNGIWKMDCFPALQMHSDWVRSVAWAPNLGLPKSTIASASQD---  234 (302)
Q Consensus       163 ~~~~~~~~~~~~~~~l~s~~~D-----~~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~l~s~s~D---  234 (302)
                                 +++.++.||.+     ..+.+||+.+..|...  ..+......-..+.+  +    +..++.|+.+   
T Consensus       159 -----------~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~--~~~p~~r~~~~~~~~--~----~~i~v~GG~~~~~  219 (301)
T 2vpj_A          159 -----------SGVIYCLGGYDGLNILNSVEKYDPHTGHWTNV--TPMATKRSGAGVALL--N----DHIYVVGGFDGTA  219 (301)
T ss_dssp             -----------TTEEEEECCBCSSCBCCCEEEEETTTTEEEEE--CCCSSCCBSCEEEEE--T----TEEEEECCBCSSS
T ss_pred             -----------CCEEEEECCCCCCcccceEEEEeCCCCcEEeC--CCCCcccccceEEEE--C----CEEEEEeCCCCCc
Confidence                       24566777654     4588899887766532  111100111112222  2    3567777664   


Q ss_pred             --CeEEEEEeccCCcceeeeee-ccCCCcEEEEEEccCCCEEEEecCC------ceEEeeecCCceEEEeee
Q 022111          235 --GTVVIWTCAKEGEQWEGRVL-KDFKTPVWSVSWSLTGNLLAVADAN------NVTLWKEAVDGEWQQVSV  297 (302)
Q Consensus       235 --~~i~iwd~~~~~~~~~~~~~-~~~~~~v~~~~~spdg~~la~~~~d------~i~~w~~~~~~~~~~~~~  297 (302)
                        ..+.+||+...  .|..... .........+.+  ++++++.|+.+      .+.+||.. ..+|.+...
T Consensus       220 ~~~~v~~yd~~~~--~W~~~~~~p~~r~~~~~~~~--~~~i~v~GG~~~~~~~~~v~~yd~~-~~~W~~~~~  286 (301)
T 2vpj_A          220 HLSSVEAYNIRTD--SWTTVTSMTTPRCYVGATVL--RGRLYAIAGYDGNSLLSSIECYDPI-IDSWEVVTS  286 (301)
T ss_dssp             BCCCEEEEETTTT--EEEEECCCSSCCBSCEEEEE--TTEEEEECCBCSSSBEEEEEEEETT-TTEEEEEEE
T ss_pred             ccceEEEEeCCCC--cEEECCCCCCcccceeEEEE--CCEEEEEcCcCCCcccccEEEEcCC-CCeEEEcCC
Confidence              35888887653  3432110 101111122222  67777777543      36677754 468987653

>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A

Probab=95.20  E-value=1.5  Score=38.60  Aligned_cols=153  Identities=11%  Similarity=0.099  Sum_probs=86.8

Q ss_pred             CCEEEEEeCCCeEEEEEcCCCCceeEEEEecC--CCCCeeEEEecCCCCCcEEEEEecCCcEEEEEecCCC---------
Q 022111           69 GSILASCSYDGQVIIWKEGNQNDWTQAHTFND--HKSSVNSIAWAPHELGLSLACGSSDGNISVFTATADG---------  137 (302)
Q Consensus        69 ~~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~--h~~~i~~l~~~pd~~~~~l~sg~~d~~v~~~~~~~~~---------  137 (302)
                      |..++.+ .++.||.=++......+.++ ...  .-+.|..+..+|+  |.+||.. .+..|.+-.+....         
T Consensus        32 ~t~i~~a-~~n~iR~~~i~~~~~Yk~L~-~~~~i~f~~i~qlvlSps--G~lLAl~-g~~~V~Vv~LP~~~~~~~~~~~~  106 (452)
T 3pbp_A           32 GTRIVFI-QDNIIRWYNVLTDSLYHSLN-FSRHLVLDDTFHVISSTS--GDLLCLF-NDNEIFVMEVPWGYSNVEDVSIQ  106 (452)
T ss_dssp             TTEEEEE-ETTEEEEEETTTCSSCEEEE-CTTTCCCCTTCEEEECTT--SSEEEEE-CSSEEEEEECCTTCSCCCCHHHH
T ss_pred             CCEEEEE-ECCEEEEEECCCCCcceEEe-cCcccccCceeEEEECCC--CCEEEEe-cCCeEEEEEecCccccCcccccc
Confidence            4444432 34667766665332233222 221  1235778999997  6677765 45688887775221         


Q ss_pred             -Ceeeeeeccc-----CCCCeEEEEeCCCCCCCceeecccCCCceeEEEeeCCCcEEEEEEecCccccccc------ccc
Q 022111          138 -GWDTTRIDQA-----HPVGVTSVSWAPAMAPGALVGLGLLDPVQKLASCGCDNTVKVWKMYNGIWKMDCF------PAL  205 (302)
Q Consensus       138 -~~~~~~~~~~-----h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~D~~v~iwd~~~~~~~~~~~------~~~  205 (302)
                       ..+......+     ...+|..+.|+|-+.           .+..|++-..|+.||+||+.........+      ..+
T Consensus       107 ~~~q~~ty~l~~~~~~~~s~I~qVlWHPl~~-----------~ds~LVVLtsD~~Ir~yDl~~s~~~P~~L~k~~~~fg~  175 (452)
T 3pbp_A          107 DAFQIFHYSIDEEEVGPKSSIKKVLFHPKSY-----------RDSCIVVLKEDDTITMFDILNSQEKPIVLNKPNNSFGL  175 (452)
T ss_dssp             HTTEEEEEEGGGCC--CCCCEEEEEECTTBG-----------GGCEEEEEETTSCEEEEETTCTTSCCEEESCCCSEEES
T ss_pred             cccceeEEEcCCcccCCCCceeEEEeccccC-----------CCCeEEEEecCCEEEEEEcccCCCCCcchhccccccCC
Confidence             0111111111     245799999999642           24678888999999999987521110100      112


Q ss_pred             ccCCCceeEEEeeCCCCCCccEEEEEecCCeEEE
Q 022111          206 QMHSDWVRSVAWAPNLGLPKSTIASASQDGTVVI  239 (302)
Q Consensus       206 ~~h~~~v~~v~~~p~~~~~~~~l~s~s~D~~i~i  239 (302)
                      ......|.+++|.+++ + --++++.+..|-|.-
T Consensus       176 d~~~~ev~S~~Fg~~~-l-TLYvl~~t~~GDIYA  207 (452)
T 3pbp_A          176 DARVNDITDLEFSKDG-L-TLYCLNTTEGGDIFA  207 (452)
T ss_dssp             CSSCCCEEEEEECTTS-S-CEEEEECTTSCEEEE
T ss_pred             CcccceEEEEEEcCCC-c-EEEEEecCCCCCEEE
Confidence            2334668899998864 2 245666667777654

>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}

Probab=95.08  E-value=1.8  Score=38.93  Aligned_cols=163  Identities=10%  Similarity=0.053  Sum_probs=84.9

Q ss_pred             eEEEEeeCCCCCCEEEEEeCCCeEEEEEcCCCCceeEEEEe-cCCCCCeeEEEe-------cCCCCCcEEEEEecCC-c-
Q 022111           58 VWQVAWAHPKFGSILASCSYDGQVIIWKEGNQNDWTQAHTF-NDHKSSVNSIAW-------APHELGLSLACGSSDG-N-  127 (302)
Q Consensus        58 v~~v~~~~~~~~~~l~s~s~D~~i~iwd~~~~~~~~~~~~~-~~h~~~i~~l~~-------~pd~~~~~l~sg~~d~-~-  127 (302)
                      -..|+|.|...++++++....+.|++.|+..... ..+... .........++|       .++  +..|..+...+ . 
T Consensus       141 p~~la~dp~~~~~Lyv~~~~~~~i~~ID~~~~~v-~~l~~~~~~~~~~p~~ia~~~~~~~~d~~--G~~lyvad~~~~~~  217 (496)
T 3kya_A          141 NGRLAFDPLNKDHLYICYDGHKAIQLIDLKNRML-SSPLNINTIPTNRIRSIAFNKKIEGYADE--AEYMIVAIDYDGKG  217 (496)
T ss_dssp             EEEEEEETTEEEEEEEEEETEEEEEEEETTTTEE-EEEECCTTSSCSBEEEEEECCCBTTTBCT--TCEEEEEECCCTTG
T ss_pred             CCEEEEccCCCCEEEEEECCCCeEEEEECCCCEE-EEEEccCccccCCCcEEEEeecccccCCC--CCEEEEEeCCCCCc
Confidence            3468887522245555544456788888766422 111111 112235789999       887  55455554443 2 


Q ss_pred             -----EEEEEecCCCCeee----eee-cccCCCCeEEEEeCCCCCCCceeecccCCCceeEEEeeCCCcEEEEEEe----
Q 022111          128 -----ISVFTATADGGWDT----TRI-DQAHPVGVTSVSWAPAMAPGALVGLGLLDPVQKLASCGCDNTVKVWKMY----  193 (302)
Q Consensus       128 -----v~~~~~~~~~~~~~----~~~-~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~D~~v~iwd~~----  193 (302)
                           |.+++...++.+..    ..+ ...|+   ..++.+|.             ++.++++-..++.|..+|+.    
T Consensus       218 ~~~~~V~~i~r~~~G~~~~~~~~~~v~~~~~p---~giavdp~-------------~g~LYvtd~~~g~V~r~d~~~~~~  281 (496)
T 3kya_A          218 DESPSVYIIKRNADGTFDDRSDIQLIAAYKQC---NGATIHPI-------------NGELYFNSYEKGQVFRLDLVDYFK  281 (496)
T ss_dssp             GGEEEEEEEECCTTSCCSTTSCEEEEEEESCC---CCEEECTT-------------TCCEEEEETTTTEEEEECHHHHHH
T ss_pred             ccCceEEEEecCCCCceeecccceeeccCCCc---eEEEEcCC-------------CCeEEEEECCCCEEEEEecccccc
Confidence                 44444332222210    000 00111   22233332             24566677778889999987    


Q ss_pred             ---cCcc-c---------cccccccccCCCceeEEEeeCCCCCCcc-EEEEEecCCeEEEEEecc
Q 022111          194 ---NGIW-K---------MDCFPALQMHSDWVRSVAWAPNLGLPKS-TIASASQDGTVVIWTCAK  244 (302)
Q Consensus       194 ---~~~~-~---------~~~~~~~~~h~~~v~~v~~~p~~~~~~~-~l~s~s~D~~i~iwd~~~  244 (302)
                         ++.. .         ...+.. .+...+-+.|+|+|++    + ..++=+..+.|+.++...
T Consensus       282 ~~~tg~~~tp~~~~~~g~~~~l~~-~~~~~~p~~ia~~p~G----~~lYvaD~~~h~I~kid~dg  341 (496)
T 3kya_A          282 TIKNGGSWDPIVKNNPNTFKQLFT-IADPSWEFQIFIHPTG----KYAYFGVINNHYFMRSDYDE  341 (496)
T ss_dssp             HHHTTCCCCCBGGGCTTTEEEEEE-CSSSSCCEEEEECTTS----SEEEEEETTTTEEEEEEEET
T ss_pred             cccCceeecccccccccccceeEe-cCCCCCceEEEEcCCC----CEEEEEeCCCCEEEEEecCC
Confidence               3321 0         001111 1223456899999996    4 466667788888877653

>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}

Probab=95.04  E-value=1.7  Score=38.32  Aligned_cols=155  Identities=10%  Similarity=0.084  Sum_probs=81.6

Q ss_pred             EEEEeeCCCCCCEEEEEeCCCeEEEEEcCCCCceeEEEEecCCCCCeeEEEecCCCCCcEEEEEec-CC----cEEEEEe
Q 022111           59 WQVAWAHPKFGSILASCSYDGQVIIWKEGNQNDWTQAHTFNDHKSSVNSIAWAPHELGLSLACGSS-DG----NISVFTA  133 (302)
Q Consensus        59 ~~v~~~~~~~~~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~h~~~i~~l~~~pd~~~~~l~sg~~-d~----~v~~~~~  133 (302)
                      ..|++++...+.+ ..+...+.|+.+|+....    +..+.........++|.++  +..|..+.. .+    .+.+++.
T Consensus       140 ~~lavdp~~~g~L-yv~d~~~~I~~id~~~~~----v~~~~~~~~~P~~ia~d~~--G~~lyvad~~~~~~~~~v~~~~~  212 (430)
T 3tc9_A          140 VWLSFDPKNHNHL-YLVGEQHPTRLIDFEKEY----VSTVYSGLSKVRTICWTHE--ADSMIITNDQNNNDRPNNYILTR  212 (430)
T ss_dssp             CEEEEETTEEEEE-EEEEBTEEEEEEETTTTE----EEEEECCCSCEEEEEECTT--SSEEEEEECCSCTTSEEEEEEEG
T ss_pred             CEEEECCCCCCeE-EEEeCCCcEEEEECCCCE----EEEEecCCCCcceEEEeCC--CCEEEEEeCCCCcccceEEEEeC
Confidence            4677764112444 444444788888876532    2233334456789999987  554444443 22    2222222


Q ss_pred             cCCCCee-eeeecccCCCCeEEEEeCCCCCCCceeecccCCCceeEEEeeCCCcEEEEEEecCccccccccccccCCCce
Q 022111          134 TADGGWD-TTRIDQAHPVGVTSVSWAPAMAPGALVGLGLLDPVQKLASCGCDNTVKVWKMYNGIWKMDCFPALQMHSDWV  212 (302)
Q Consensus       134 ~~~~~~~-~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~D~~v~iwd~~~~~~~~~~~~~~~~h~~~v  212 (302)
                        .+.+. ...+. . ......++++|.             ++.++++-..++.|..+|...+...  .+... +...+-
T Consensus       213 --~g~~~~~~~l~-~-~~~p~giavdp~-------------~g~lyv~d~~~~~V~~~~~~~~~~~--~~~~~-~~~~~P  272 (430)
T 3tc9_A          213 --ESGFKVITELT-K-GQNCNGAETHPI-------------NGELYFNSWNAGQVFRYDFTTQETT--PLFTI-QDSGWE  272 (430)
T ss_dssp             --GGTSCSEEEEE-E-CSSCCCEEECTT-------------TCCEEEEETTTTEEEEEETTTTEEE--EEEEC-SSSSCC
T ss_pred             --CCceeeeeeec-c-CCCceEEEEeCC-------------CCEEEEEECCCCEEEEEECCCCcEE--EEEEc-CCCCcc
Confidence              22121 01110 0 111233445542             2455666666778888887654210  11111 112446


Q ss_pred             eEEEeeCCCCCCcc-EEEEEecCCeEEEEEecc
Q 022111          213 RSVAWAPNLGLPKS-TIASASQDGTVVIWTCAK  244 (302)
Q Consensus       213 ~~v~~~p~~~~~~~-~l~s~s~D~~i~iwd~~~  244 (302)
                      +.|+|+|++    + .+++-...+.|..++.+.
T Consensus       273 ~gia~~pdG----~~lyv~d~~~~~I~~~~~d~  301 (430)
T 3tc9_A          273 FHIQFHPSG----NYAYIVVVNQHYILRSDYDW  301 (430)
T ss_dssp             EEEEECTTS----SEEEEEETTTTEEEEEEEET
T ss_pred             eeEEEcCCC----CEEEEEECCCCEEEEEeCCc
Confidence            789999996    4 566667788899988764

>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A

Probab=94.85  E-value=0.29  Score=46.32  Aligned_cols=186  Identities=8%  Similarity=-0.083  Sum_probs=88.2

Q ss_pred             CCCcEEEEeecCCCceEEEEecCcccCeEEEEeeCCCCCCEEEEEeCCCeEEEEEcCCCCc-eeEEEEecCCCCCeeEEE
Q 022111           31 SDSSIKIIGLSNSASQHLATLKGHRGPVWQVAWAHPKFGSILASCSYDGQVIIWKEGNQND-WTQAHTFNDHKSSVNSIA  109 (302)
Q Consensus        31 ~d~~v~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~s~D~~i~iwd~~~~~~-~~~~~~~~~h~~~i~~l~  109 (302)
                      ..+.|+..++.....  ...+.. ...+..|+|.+. .+.++++-...+.|..+++..... ......+.........|+
T Consensus       384 ~~~~I~~id~~~~~~--~~~~~~-~~~p~gla~d~~-~~~Ly~sD~~~~~I~~~~~~g~~~~~~~~~~i~~~~~~P~gla  459 (699)
T 1n7d_A          384 NRHEVRKMTLDRSEY--TSLIPN-LRNVVALDTEVA-SNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLA  459 (699)
T ss_dssp             CTTC-CEECTTSCCE--ECCSCC-CTTCCCCEEETT-TTEEEECCTTTTSBEEEESCCCCC-CCCCCBCCSCC--CCCEE
T ss_pred             CccceEEEeCCCCcc--eeeecc-CcceEEEccccc-cCeEEEEecCCCeEEEEecCCCCCCcceEEEEeCCCCCcceEE
Confidence            345677777654221  111222 233557788653 345555555677888888754100 001111111122345677


Q ss_pred             ecCCCCCcEEEEEecCCcEEEEEecCCCCeeeeeecccCCCCeEEEEeCCCCCCCceeecccCCCceeEEEeeC-CCcEE
Q 022111          110 WAPHELGLSLACGSSDGNISVFTATADGGWDTTRIDQAHPVGVTSVSWAPAMAPGALVGLGLLDPVQKLASCGC-DNTVK  188 (302)
Q Consensus       110 ~~pd~~~~~l~sg~~d~~v~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~-D~~v~  188 (302)
                      +.+.. +.++++-...+.|.++++...  .....+. ........+++.|..             +.++++-.. .+.|.
T Consensus       460 vD~~~-g~LY~tD~~~~~I~v~d~dg~--~~~~l~~-~~~~~P~giavDp~~-------------g~ly~td~~~~~~I~  522 (699)
T 1n7d_A          460 VDWIH-SNIYWTDSVLGTVSVADTKGV--KRKTLFR-EQGSKPRAIVVDPVH-------------GFMYWTDWGTPAKIK  522 (699)
T ss_dssp             CCCSS-SBCEECCTTTSCEEEEBSSSC--CEEEECC-CSSCCCCCEECCSSS-------------SCCEECCCSSSCCEE
T ss_pred             EEeeC-CcEEEEeccCCeEEEEecCCC--ceEEEEe-CCCCCcceEEEccCC-------------CcEEEcccCCCCeEE
Confidence            76442 344444445677877765421  1111111 111122344555432             233443322 25677


Q ss_pred             EEEEecCccccccccccccCCCceeEEEeeCCCCCCccEEEEEecCCeEEEEEecc
Q 022111          189 VWKMYNGIWKMDCFPALQMHSDWVRSVAWAPNLGLPKSTIASASQDGTVVIWTCAK  244 (302)
Q Consensus       189 iwd~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~l~s~s~D~~i~iwd~~~  244 (302)
                      ++++...... ..+   ...-.+-+.|+|+|++   +...++-+..+.|..+++..
T Consensus       523 ~~~~dG~~~~-~l~---~~~l~~PnGlavd~~~---~~LY~aD~~~~~I~~~d~dG  571 (699)
T 1n7d_A          523 KGGLNGVDIY-SLV---TENIQWPNGITLDLLS---GRLYWVDSKLHSISSIDVNG  571 (699)
T ss_dssp             BCCSSSCCCC-EES---CSSCSSCCCEEECTTT---CCEEEEETTTTEEEEECSSS
T ss_pred             EEeCCCCCee-EEE---eCCCCCccEEEEeccC---CEEEEEecCCCeEEEEccCC
Confidence            6666432111 010   1112345789999875   35666667788899998864

>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}

Probab=94.72  E-value=3.1  Score=39.85  Aligned_cols=216  Identities=9%  Similarity=-0.056  Sum_probs=109.6

Q ss_pred             CCCcEEEEeecCCCceEEEEecCcccCeEEEEeeCCCCCCEEEEEeCCCeEEEEEcCCCCc-eeEEEEecCCCCCeeEEE
Q 022111           31 SDSSIKIIGLSNSASQHLATLKGHRGPVWQVAWAHPKFGSILASCSYDGQVIIWKEGNQND-WTQAHTFNDHKSSVNSIA  109 (302)
Q Consensus        31 ~d~~v~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~s~D~~i~iwd~~~~~~-~~~~~~~~~h~~~i~~l~  109 (302)
                      ....|+..++......   .+......+..|.|... .+.++++-...+.|..+++..... ......+.........|+
T Consensus       402 n~~~Ir~i~l~~~~~~---~l~~~~~~~~gl~~d~~-~~~lY~sD~~~~~I~~~~l~g~~~~~~~~~vi~~~l~~P~GLA  477 (791)
T 3m0c_C          402 NRHEVRKMTLDRSEYT---SLIPNLRNVVALDTEVA-SNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLA  477 (791)
T ss_dssp             CBSSEEEECTTSCCCE---EEECSCSSEEEEEEETT-TTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEE
T ss_pred             cccceeEeeccCCcce---eeecCCCceEEEeeccc-CCeeEEeeccceeEEEEeccCCCCCcceeEEEecCCCCcceee
Confidence            4456777777543222   22223445678898753 356667777778888888754211 011122332344567788


Q ss_pred             ecCCCCCcEEEEEecCCcEEEEEecCCCCeeeeeecccCCCCeEEEEeCCCCCCCceeecccCCCceeEEEeeC-CCcEE
Q 022111          110 WAPHELGLSLACGSSDGNISVFTATADGGWDTTRIDQAHPVGVTSVSWAPAMAPGALVGLGLLDPVQKLASCGC-DNTVK  188 (302)
Q Consensus       110 ~~pd~~~~~l~sg~~d~~v~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~-D~~v~  188 (302)
                      +.+.. +.+..+-...+.|.+.++...  .....+. ........|+..|..             +.++++-.. .+.|.
T Consensus       478 vD~~~-~~LY~tD~~~~~I~v~~ldG~--~~~~l~~-~~l~~P~gIaVDp~~-------------g~LYwtD~g~~~~I~  540 (791)
T 3m0c_C          478 VDWIH-SNIYWTDSVLGTVSVADTKGV--KRKTLFR-ENGSKPRAIVVDPVH-------------GFMYWTDWGTPAKIK  540 (791)
T ss_dssp             EETTT-TEEEEEETTTTEEEEEETTSS--SEEEEEE-CTTCCEEEEEEETTT-------------TEEEEEECSSSCEEE
T ss_pred             eeecC-CcEEEEecCCCeEEEEeCCCC--eEEEEEe-CCCCCcceEEEecCC-------------CCEEEecCCCCCeEE
Confidence            87652 344555555677777776422  1111111 222335666666642             344454422 25677


Q ss_pred             EEEEecCccccccccccccCCCceeEEEeeCCCCCCccEEEEEecCCeEEEEEeccCCcceeeeeecc--CCCcEEEEEE
Q 022111          189 VWKMYNGIWKMDCFPALQMHSDWVRSVAWAPNLGLPKSTIASASQDGTVVIWTCAKEGEQWEGRVLKD--FKTPVWSVSW  266 (302)
Q Consensus       189 iwd~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~--~~~~v~~~~~  266 (302)
                      +.++...... ..   +...-.+.+.|++.|..   +...++=...+.|...++.....   ..+...  .-....+|++
T Consensus       541 ~~~~dG~~~~-~l---v~~~l~~P~GLavD~~~---~~LYwaD~~~~~I~~~d~dG~~~---~~v~~~~~~l~~P~glav  610 (791)
T 3m0c_C          541 KGGLNGVDIY-SL---VTENIQWPNGITLDLLS---GRLYWVDSKLHSISSIDVNGGNR---KTILEDEKRLAHPFSLAV  610 (791)
T ss_dssp             EEETTSCCEE-EE---ECSSCSCEEEEEEETTT---TEEEEEETTTTEEEEEETTSCSC---EEEEECTTTTSSEEEEEE
T ss_pred             EEecCCCceE-EE---EeCCCCCceEEEEecCC---CeEEEEeCCCCcEEEEecCCCce---EEEecCCCccCCCCEEEE
Confidence            7776543111 11   11222467889999764   35555555667788888764322   122221  1122446665


Q ss_pred             ccCCCEEEEecCC
Q 022111          267 SLTGNLLAVADAN  279 (302)
Q Consensus       267 spdg~~la~~~~d  279 (302)
                        .+.+|..++..
T Consensus       611 --~~~~lYwtD~~  621 (791)
T 3m0c_C          611 --FEDKVFWTDII  621 (791)
T ss_dssp             --ETTEEEEEETT
T ss_pred             --eCCEEEEEECC
Confidence              34456566554

>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B

Probab=94.67  E-value=1.7  Score=36.57  Aligned_cols=223  Identities=8%  Similarity=-0.042  Sum_probs=113.0

Q ss_pred             CCcEEEEeecCCCceEEEEecCcccCeEEEEeeCCCCCCEEEEEeCCCeEEEEEcCCCCceeEEEEecCCCCCeeEEEec
Q 022111           32 DSSIKIIGLSNSASQHLATLKGHRGPVWQVAWAHPKFGSILASCSYDGQVIIWKEGNQNDWTQAHTFNDHKSSVNSIAWA  111 (302)
Q Consensus        32 d~~v~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~h~~~i~~l~~~  111 (302)
                      ...|+..++..........+.+ ......+.|.+. .+.++.+-...+.|..+++........+  +.........+++.
T Consensus        12 ~~~I~~i~l~~~~~~~~~~~~~-~~~~~~ld~d~~-~~~lyw~D~~~~~I~r~~~~g~~~~~~~--~~~~l~~p~glavd   87 (318)
T 3sov_A           12 RRDLRLVDATNGKENATIVVGG-LEDAAAVDFVFS-HGLIYWSDVSEEAIKRTEFNKTESVQNV--VVSGLLSPDGLACD   87 (318)
T ss_dssp             EEEEEEEETTCTTSCCEEEEEE-EEEEEEEEEEGG-GTEEEEEETTTTEEEEEETTSSSCCCEE--EEECCSCCCEEEEE
T ss_pred             cCeEEEEECCCCceEEEEEecC-CCccEEEEEEeC-CCEEEEEECCCCcEEEEEccCCCceEEE--EcCCCCCccEEEEE
Confidence            4668888886542111111222 224567888753 3566677677888988887654211111  11122345677777


Q ss_pred             CCCCCcEEEEEecCCcEEEEEecCCCCeeeeeecccCCCCeEEEEeCCCCCCCceeecccCCCceeEEEe-eCCCcEEEE
Q 022111          112 PHELGLSLACGSSDGNISVFTATADGGWDTTRIDQAHPVGVTSVSWAPAMAPGALVGLGLLDPVQKLASC-GCDNTVKVW  190 (302)
Q Consensus       112 pd~~~~~l~sg~~d~~v~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~s~-~~D~~v~iw  190 (302)
                      +.. +.+..+-...+.|.+++....  ....... ........++..|..             +..+.+- +..+.|...
T Consensus        88 ~~~-g~ly~~d~~~~~I~~~~~dG~--~~~~l~~-~~~~~P~giavdp~~-------------g~ly~td~~~~~~I~r~  150 (318)
T 3sov_A           88 WLG-EKLYWTDSETNRIEVSNLDGS--LRKVLFW-QELDQPRAIALDPSS-------------GFMYWTDWGEVPKIERA  150 (318)
T ss_dssp             TTT-TEEEEEETTTTEEEEEETTSC--SCEEEEC-SSCSSEEEEEEEGGG-------------TEEEEEECSSSCEEEEE
T ss_pred             cCC-CeEEEEECCCCEEEEEECCCC--cEEEEEe-CCCCCccEEEEeCCC-------------CEEEEEecCCCCEEEEE
Confidence            542 444455455677877775422  1111111 112234556665532             2344443 234567766


Q ss_pred             EEecCccccccccccccCCCceeEEEeeCCCCCCccEEEEEecCCeEEEEEeccCCcceeeeeeccCCCcEEEEEEccCC
Q 022111          191 KMYNGIWKMDCFPALQMHSDWVRSVAWAPNLGLPKSTIASASQDGTVVIWTCAKEGEQWEGRVLKDFKTPVWSVSWSLTG  270 (302)
Q Consensus       191 d~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~spdg  270 (302)
                      ++...... ...   ...-..-+.|+++|++   +....+=+..+.|..+|++....   ..+..+......++++..+ 
T Consensus       151 ~~dG~~~~-~~~---~~~l~~Pnglavd~~~---~~lY~aD~~~~~I~~~d~dG~~~---~~~~~~~~~~P~glav~~~-  219 (318)
T 3sov_A          151 GMDGSSRF-III---NSEIYWPNGLTLDYEE---QKLYWADAKLNFIHKSNLDGTNR---QAVVKGSLPHPFALTLFED-  219 (318)
T ss_dssp             ETTSCSCE-EEE---CSSCSCEEEEEEETTT---TEEEEEETTTTEEEEEETTSCSC---EEEECSCCSCEEEEEEETT-
T ss_pred             EcCCCCeE-EEE---ECCCCCccEEEEeccC---CEEEEEECCCCEEEEEcCCCCce---EEEecCCCCCceEEEEeCC-
Confidence            66432110 110   1112345889999975   35666666778899998864321   1222222234566776432 


Q ss_pred             CEEEEecCC-ceEEeee
Q 022111          271 NLLAVADAN-NVTLWKE  286 (302)
Q Consensus       271 ~~la~~~~d-~i~~w~~  286 (302)
                      .++.+-... .|..++.
T Consensus       220 ~lywtd~~~~~V~~~~~  236 (318)
T 3sov_A          220 ILYWTDWSTHSILACNK  236 (318)
T ss_dssp             EEEEEETTTTEEEEEET
T ss_pred             EEEEEecCCCeEEEEEC
Confidence            333332222 5666665

>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L

Probab=94.52  E-value=2.2  Score=37.17  Aligned_cols=192  Identities=9%  Similarity=-0.060  Sum_probs=101.0

Q ss_pred             EEEEeeCCCcEEEEeecCCCceEEEEecCcccCeEEEEeeCCCCCCEEEEEeCCCeEEEEEcCCCCce-eEEEEecCCCC
Q 022111           25 RLATASSDSSIKIIGLSNSASQHLATLKGHRGPVWQVAWAHPKFGSILASCSYDGQVIIWKEGNQNDW-TQAHTFNDHKS  103 (302)
Q Consensus        25 ~l~s~~~d~~v~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~s~D~~i~iwd~~~~~~~-~~~~~~~~h~~  103 (302)
                      +|+.+ ....|+..++.......   +......+..|+|.+. .+.++.+-...+.|..+++...... .....+.....
T Consensus        85 ~ll~~-~~~~I~~i~l~~~~~~~---~~~~~~~~~~l~~d~~-~~~lywsD~~~~~I~~~~~~g~~~~~~~~~~~~~~~~  159 (400)
T 3p5b_L           85 YLFFT-NRHEVRKMTLDRSEYTS---LIPNLRNVVALDTEVA-SNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQ  159 (400)
T ss_dssp             EEEEE-ETTEEEEECTTSCSCEE---EECSCSCEEEEEEETT-TTEEEEEETTTTEEEEEEC------CCCEEEECSSCS
T ss_pred             eeEEe-ccceeEEEccCCcceeE---eccccCcceEEeeeec-cCceEEEecCCCeEEEEEcccCCCCCcceEEEeCCCC
Confidence            44433 35678888876543222   2223456778999753 3566666667788888887542100 01112222344


Q ss_pred             CeeEEEecCCCCCcEEEEEecCCcEEEEEecCCCCeeeeeecccCCCCeEEEEeCCCCCCCceeecccCCCceeEEEe-e
Q 022111          104 SVNSIAWAPHELGLSLACGSSDGNISVFTATADGGWDTTRIDQAHPVGVTSVSWAPAMAPGALVGLGLLDPVQKLASC-G  182 (302)
Q Consensus       104 ~i~~l~~~pd~~~~~l~sg~~d~~v~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~s~-~  182 (302)
                      ....+++.+.. +.+..+-...+.|.+.++..  ......+. ........++..|..             +.++.+- +
T Consensus       160 ~p~glavD~~~-~~lY~~d~~~~~I~~~~~~g--~~~~~l~~-~~~~~P~~iavdp~~-------------g~ly~td~~  222 (400)
T 3p5b_L          160 APDGLAVDWIH-SNIYWTDSVLGTVSVADTKG--VKRKTLFR-ENGSKPRAIVVDPVH-------------GFMYWTDWG  222 (400)
T ss_dssp             CEEEEEEETTT-TEEEEEETTTTEEEEECTTT--CSEEEEEE-CSSCCEEEEEEETTT-------------TEEEEEECS
T ss_pred             CcccEEEEecC-CceEEEECCCCeEEEEeCCC--CceEEEEe-CCCCCcceEEEeccc-------------CeEEEEeCC
Confidence            56778887642 34444444566777766542  11111111 122234566666542             3444444 2


Q ss_pred             CCCcEEEEEEecCccccccccccccCCCceeEEEeeCCCCCCccEEEEEecCCeEEEEEeccC
Q 022111          183 CDNTVKVWKMYNGIWKMDCFPALQMHSDWVRSVAWAPNLGLPKSTIASASQDGTVVIWTCAKE  245 (302)
Q Consensus       183 ~D~~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~l~s~s~D~~i~iwd~~~~  245 (302)
                      ..+.|...++...... ..   ....-.+-+.|+++|+.   +....+=+..+.|..+|++..
T Consensus       223 ~~~~I~~~~~dG~~~~-~~---~~~~l~~P~glavd~~~---~~lY~aD~~~~~I~~~d~dG~  278 (400)
T 3p5b_L          223 TPAKIKKGGLNGVDIY-SL---VTENIQWPNGITLDLLS---GRLYWVDSKLHSISSIDVNGG  278 (400)
T ss_dssp             SSCCEEEEETTSCSCE-EE---ECSSCSCEEEEEEETTT---TEEEEEETTTTEEEEEETTSC
T ss_pred             CCCEEEEEeCCCCccE-EE---EECCCCceEEEEEEeCC---CEEEEEECCCCEEEEEeCCCC
Confidence            2356777776543111 11   11122457889999875   355566566778988887643

>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}

Probab=94.48  E-value=1.7  Score=35.85  Aligned_cols=233  Identities=13%  Similarity=0.133  Sum_probs=111.4

Q ss_pred             CCEEEEeeC--CCcEEEEeecCCCceEEEEecCcccCeEEEEeeCCCCCCEEEEEeCC----CeEEEEEcCCCCceeEEE
Q 022111           23 GKRLATASS--DSSIKIIGLSNSASQHLATLKGHRGPVWQVAWAHPKFGSILASCSYD----GQVIIWKEGNQNDWTQAH   96 (302)
Q Consensus        23 ~~~l~s~~~--d~~v~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~s~D----~~i~iwd~~~~~~~~~~~   96 (302)
                      +..++.||.  ...+.+||........+..+......-..+.+    ++.+++.|+.+    ..+.+||+.+. .|..+.
T Consensus        12 ~~l~~~GG~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~----~~~lyv~GG~~~~~~~~~~~~d~~~~-~W~~~~   86 (306)
T 3ii7_A           12 DYRIALFGGSQPQSCRYFNPKDYSWTDIRCPFEKRRDAACVFW----DNVVYILGGSQLFPIKRMDCYNVVKD-SWYSKL   86 (306)
T ss_dssp             CEEEEEECCSSTTSEEEEETTTTEEEECCCCSCCCBSCEEEEE----TTEEEEECCBSSSBCCEEEEEETTTT-EEEEEE
T ss_pred             ceEEEEeCCCCCceEEEecCCCCCEecCCCCCcccceeEEEEE----CCEEEEEeCCCCCCcceEEEEeCCCC-eEEECC
Confidence            345556664  35688888765544433333211111112222    25677777755    56778887653 465554


Q ss_pred             EecCCCCCeeEEEecCCCCCcEEEEEecC------CcEEEEEecCCCCeeeee-ecccCCCCeEEEEeCCCCCCCceeec
Q 022111           97 TFNDHKSSVNSIAWAPHELGLSLACGSSD------GNISVFTATADGGWDTTR-IDQAHPVGVTSVSWAPAMAPGALVGL  169 (302)
Q Consensus        97 ~~~~h~~~i~~l~~~pd~~~~~l~sg~~d------~~v~~~~~~~~~~~~~~~-~~~~h~~~v~~~~~~~~~~~~~~~~~  169 (302)
                      .+......-..+.+  +  +.+++.|+.+      ..+.+||..+. .|.... +... ......+..            
T Consensus        87 ~~p~~r~~~~~~~~--~--~~iyv~GG~~~~~~~~~~~~~~d~~~~-~W~~~~~~p~~-r~~~~~~~~------------  148 (306)
T 3ii7_A           87 GPPTPRDSLAACAA--E--GKIYTSGGSEVGNSALYLFECYDTRTE-SWHTKPSMLTQ-RCSHGMVEA------------  148 (306)
T ss_dssp             CCSSCCBSCEEEEE--T--TEEEEECCBBTTBSCCCCEEEEETTTT-EEEEECCCSSC-CBSCEEEEE------------
T ss_pred             CCCccccceeEEEE--C--CEEEEECCCCCCCcEeeeEEEEeCCCC-ceEeCCCCcCC-cceeEEEEE------------
Confidence            33222122222333  2  4566777655      45777776532 343211 1000 000111111            


Q ss_pred             ccCCCceeEEEeeC---------CCcEEEEEEecCcccccc-cc-ccccCCCceeEEEeeCCCCCCccEEEEEecC----
Q 022111          170 GLLDPVQKLASCGC---------DNTVKVWKMYNGIWKMDC-FP-ALQMHSDWVRSVAWAPNLGLPKSTIASASQD----  234 (302)
Q Consensus       170 ~~~~~~~~l~s~~~---------D~~v~iwd~~~~~~~~~~-~~-~~~~h~~~v~~v~~~p~~~~~~~~l~s~s~D----  234 (302)
                          +++.++.||.         -..+.+||+.+..|.... .. ....|    ..+.+  +    +..++.|+.+    
T Consensus       149 ----~~~iyv~GG~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~----~~~~~--~----~~i~v~GG~~~~~~  214 (306)
T 3ii7_A          149 ----NGLIYVCGGSLGNNVSGRVLNSCEVYDPATETWTELCPMIEARKNH----GLVFV--K----DKIFAVGGQNGLGG  214 (306)
T ss_dssp             ----TTEEEEECCEESCTTTCEECCCEEEEETTTTEEEEECCCSSCCBSC----EEEEE--T----TEEEEECCEETTEE
T ss_pred             ----CCEEEEECCCCCCCCcccccceEEEeCCCCCeEEECCCccchhhcc----eEEEE--C----CEEEEEeCCCCCCC
Confidence                2355666653         345888998877664321 00 11112    12222  2    2566666653    


Q ss_pred             -CeEEEEEeccCCcceeeeee-ccCCCcEEEEEEccCCCEEEEecC------CceEEeeecCCceEEEeee
Q 022111          235 -GTVVIWTCAKEGEQWEGRVL-KDFKTPVWSVSWSLTGNLLAVADA------NNVTLWKEAVDGEWQQVSV  297 (302)
Q Consensus       235 -~~i~iwd~~~~~~~~~~~~~-~~~~~~v~~~~~spdg~~la~~~~------d~i~~w~~~~~~~~~~~~~  297 (302)
                       ..+.+||+...  .|..... .........+.+  ++++++.|+.      +.+.+||.. ..+|.+...
T Consensus       215 ~~~~~~yd~~~~--~W~~~~~~p~~r~~~~~~~~--~~~i~v~GG~~~~~~~~~~~~yd~~-~~~W~~~~~  280 (306)
T 3ii7_A          215 LDNVEYYDIKLN--EWKMVSPMPWKGVTVKCAAV--GSIVYVLAGFQGVGRLGHILEYNTE-TDKWVANSK  280 (306)
T ss_dssp             BCCEEEEETTTT--EEEECCCCSCCBSCCEEEEE--TTEEEEEECBCSSSBCCEEEEEETT-TTEEEEEEE
T ss_pred             CceEEEeeCCCC--cEEECCCCCCCccceeEEEE--CCEEEEEeCcCCCeeeeeEEEEcCC-CCeEEeCCC
Confidence             35778887653  3532110 111111222333  6778888763      246778764 568988754

>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A

Probab=94.44  E-value=0.52  Score=44.58  Aligned_cols=202  Identities=10%  Similarity=-0.058  Sum_probs=97.6

Q ss_pred             eeEEEEccCCCEEEEee-CCCcEEEEeecCCC--ceEEEEecCcccCeEEEEeeCCCCCCEEEEEeCCCeEEEEEcCCCC
Q 022111           14 VHDVAMDFYGKRLATAS-SDSSIKIIGLSNSA--SQHLATLKGHRGPVWQVAWAHPKFGSILASCSYDGQVIIWKEGNQN   90 (302)
Q Consensus        14 v~~~~~s~~~~~l~s~~-~d~~v~lw~~~~~~--~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~s~D~~i~iwd~~~~~   90 (302)
                      +..++|++.+..|+.+. ..+.|+.+++....  ......+.........|++... .++++++-...+.|.+.++....
T Consensus       408 p~gla~d~~~~~Ly~sD~~~~~I~~~~~~g~~~~~~~~~~i~~~~~~P~glavD~~-~g~LY~tD~~~~~I~v~d~dg~~  486 (699)
T 1n7d_A          408 VVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWI-HSNIYWTDSVLGTVSVADTKGVK  486 (699)
T ss_dssp             CCCCEEETTTTEEEECCTTTTSBEEEESCCCCC-CCCCCBCCSCC--CCCEECCCS-SSBCEECCTTTSCEEEEBSSSCC
T ss_pred             eEEEccccccCeEEEEecCCCeEEEEecCCCCCCcceEEEEeCCCCCcceEEEEee-CCcEEEEeccCCeEEEEecCCCc
Confidence            45677887665555443 45778888775310  0111111111112345666432 35666666677889888875432


Q ss_pred             ceeEEEEecCCCCCeeEEEecCCCCCcEEEEEecC-CcEEEEEecCCCCeeeeeecccCCCCeEEEEeCCCCCCCceeec
Q 022111           91 DWTQAHTFNDHKSSVNSIAWAPHELGLSLACGSSD-GNISVFTATADGGWDTTRIDQAHPVGVTSVSWAPAMAPGALVGL  169 (302)
Q Consensus        91 ~~~~~~~~~~h~~~i~~l~~~pd~~~~~l~sg~~d-~~v~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~  169 (302)
                      .   ...+.........+++.|.. +.++.+-... +.|..+++...  .. ..+..........|+|+|..        
T Consensus       487 ~---~~l~~~~~~~P~giavDp~~-g~ly~td~~~~~~I~~~~~dG~--~~-~~l~~~~l~~PnGlavd~~~--------  551 (699)
T 1n7d_A          487 R---KTLFREQGSKPRAIVVDPVH-GFMYWTDWGTPAKIKKGGLNGV--DI-YSLVTENIQWPNGITLDLLS--------  551 (699)
T ss_dssp             E---EEECCCSSCCCCCEECCSSS-SCCEECCCSSSCCEEBCCSSSC--CC-CEESCSSCSSCCCEEECTTT--------
T ss_pred             e---EEEEeCCCCCcceEEEccCC-CcEEEcccCCCCeEEEEeCCCC--Ce-eEEEeCCCCCccEEEEeccC--------
Confidence            1   11122223456788888863 3333332222 55655544311  11 11110111223456676643        


Q ss_pred             ccCCCceeEEEeeCCCcEEEEEEecCccccccccccccCCCceeEEEeeCCCCCCccEEEEEecCCeEEEEEec
Q 022111          170 GLLDPVQKLASCGCDNTVKVWKMYNGIWKMDCFPALQMHSDWVRSVAWAPNLGLPKSTIASASQDGTVVIWTCA  243 (302)
Q Consensus       170 ~~~~~~~~l~s~~~D~~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~l~s~s~D~~i~iwd~~  243 (302)
                           +.++++-+..+.|.++|+.....  ..+....+.-.....|++..+     ..+++-...+.|..++..
T Consensus       552 -----~~LY~aD~~~~~I~~~d~dG~~~--~~~~~~~~~~~~P~glavd~~-----~lywtd~~~~~V~~~d~~  613 (699)
T 1n7d_A          552 -----GRLYWVDSKLHSISSIDVNGGNR--KTILEDEKRLAHPFSLAVFED-----KVFWTDIINEAIFSANRL  613 (699)
T ss_dssp             -----CCEEEEETTTTEEEEECSSSSCC--EEECCCSSSCSSCCCCEEETT-----EEEEECSTTTCEEEEETT
T ss_pred             -----CEEEEEecCCCeEEEEccCCCce--EEEEecCCcCCCceEeEEECC-----EEEEEeCCCCeEEEEEcc
Confidence                 35566666677888888764311  111111111112234444332     455666667788888753

>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1

Probab=94.43  E-value=2.7  Score=39.39  Aligned_cols=61  Identities=15%  Similarity=0.232  Sum_probs=36.5

Q ss_pred             CEEEEEeCCCeEEEEEcCCCCceeEEEEecCCCC----------Ce-eEEEecCCCCCcEEEEEecCCcEEEEEecCCC
Q 022111           70 SILASCSYDGQVIIWKEGNQNDWTQAHTFNDHKS----------SV-NSIAWAPHELGLSLACGSSDGNISVFTATADG  137 (302)
Q Consensus        70 ~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~h~~----------~i-~~l~~~pd~~~~~l~sg~~d~~v~~~~~~~~~  137 (302)
                      ..|+.++.++.|.-+|..++.   .+.++.....          .+ ..+++.    +..|+.++.|+.+..+|..++.
T Consensus        67 g~vyv~~~~~~v~AlD~~tG~---~~W~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~v~v~~~dg~l~alD~~tG~  138 (668)
T 1kv9_A           67 GVIYTSMSWSRVIAVDAASGK---ELWRYDPEVAKVKARTSCCDAVNRGVALW----GDKVYVGTLDGRLIALDAKTGK  138 (668)
T ss_dssp             TEEEEEEGGGEEEEEETTTCC---EEEEECCCCCGGGGGGCTTCSCCCCCEEE----BTEEEEECTTSEEEEEETTTCC
T ss_pred             CEEEEECCCCeEEEEECCCCh---hceEECCCCCccccccccccCCccceEEE----CCEEEEEcCCCEEEEEECCCCC
Confidence            466677788888889987764   2333322211          01 112222    2367888889999998876543

>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...

Probab=94.06  E-value=5.5  Score=39.96  Aligned_cols=76  Identities=17%  Similarity=0.076  Sum_probs=46.0

Q ss_pred             ccceeEEEEccC------CCEEEEeeC-CCcEEEEeecCCCceEEEEecCcccCeEEEEeeCCCCCCEEEEEeCCCeEEE
Q 022111           11 EDTVHDVAMDFY------GKRLATASS-DSSIKIIGLSNSASQHLATLKGHRGPVWQVAWAHPKFGSILASCSYDGQVII   83 (302)
Q Consensus        11 ~~~v~~~~~s~~------~~~l~s~~~-d~~v~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~s~D~~i~i   83 (302)
                      ...|.++++.+.      ++++|.|.. |++|+|+++..-.......+.+ +....++++..-....+|..|-.||.+.-
T Consensus       553 ~~evscl~i~~~~~~~~~s~~~aVg~~~d~tv~I~sL~~l~~~~~~~L~~-~~~p~si~l~~~~~~~~L~igl~dG~l~~  631 (1158)
T 3ei3_A          553 EHEVACLDITPLGDSNGLSPLCAIGLWTDISARILKLPSFELLHKEMLGG-EIIPRSILMTTFESSHYLLCALGDGALFY  631 (1158)
T ss_dssp             SSCEEEEECCCCSSSTTCCSEEEEEETTTTEEEEEETTTCCEEEEEECCS-SCCEEEEEEEEETTEEEEEEEETTSEEEE
T ss_pred             CCceEEEEeecCCCCcccccEEEEEECCCCEEEEEECCCCCeEEEEECCC-CCCCcEEEEEEeCCCcEEEEEeCCCeEEE
Confidence            346888888753      479999996 9999999986422112223322 12334444332112356788888888776


Q ss_pred             EEcC
Q 022111           84 WKEG   87 (302)
Q Consensus        84 wd~~   87 (302)
                      +.+.
T Consensus       632 ~~~d  635 (1158)
T 3ei3_A          632 FGLN  635 (1158)
T ss_dssp             EEEC
T ss_pred             EEEc
Confidence            6553

>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}

Probab=94.00  E-value=2.2  Score=35.15  Aligned_cols=151  Identities=20%  Similarity=0.300  Sum_probs=72.4

Q ss_pred             CCCEEEEeeCCC-----cEEEEeecCCCceEEEEecCcccCeEEEEeeCCCCCCEEEEEeCCC-----eEEEEEcCCCCc
Q 022111           22 YGKRLATASSDS-----SIKIIGLSNSASQHLATLKGHRGPVWQVAWAHPKFGSILASCSYDG-----QVIIWKEGNQND   91 (302)
Q Consensus        22 ~~~~l~s~~~d~-----~v~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~s~D~-----~i~iwd~~~~~~   91 (302)
                      +++.++.||.++     .+.+||........+..+......-..+.+    ++++++.|+.++     .+.+||+.+ ..
T Consensus        61 ~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~----~~~iyv~GG~~~~~~~~~~~~~d~~~-~~  135 (302)
T 2xn4_A           61 AGLVFAVGGFNGSLRVRTVDSYDPVKDQWTSVANMRDRRSTLGAAVL----NGLLYAVGGFDGSTGLSSVEAYNIKS-NE  135 (302)
T ss_dssp             TTEEEEESCBCSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEE----TTEEEEEEEECSSCEEEEEEEEETTT-TE
T ss_pred             CCEEEEEeCcCCCccccceEEECCCCCceeeCCCCCccccceEEEEE----CCEEEEEcCCCCCccCceEEEEeCCC-Ce
Confidence            567777777553     477788765544443333211111112222    257777777653     466778765 34


Q ss_pred             eeEEEEecCCCCCeeEEEecCCCCCcEEEEEecC-------CcEEEEEecCCCCeeeeeecccCCCCeEEEEeCCCCCCC
Q 022111           92 WTQAHTFNDHKSSVNSIAWAPHELGLSLACGSSD-------GNISVFTATADGGWDTTRIDQAHPVGVTSVSWAPAMAPG  164 (302)
Q Consensus        92 ~~~~~~~~~h~~~i~~l~~~pd~~~~~l~sg~~d-------~~v~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~  164 (302)
                      |..+.........-.++.+  +  +.+++.|+.+       ..+..||..+ ..|...............+.+       
T Consensus       136 W~~~~~~p~~r~~~~~~~~--~--~~iyv~GG~~~~~~~~~~~~~~yd~~~-~~W~~~~~~p~~r~~~~~~~~-------  203 (302)
T 2xn4_A          136 WFHVAPMNTRRSSVGVGVV--G--GLLYAVGGYDVASRQCLSTVECYNATT-NEWTYIAEMSTRRSGAGVGVL-------  203 (302)
T ss_dssp             EEEECCCSSCCBSCEEEEE--T--TEEEEECCEETTTTEECCCEEEEETTT-TEEEEECCCSSCCBSCEEEEE-------
T ss_pred             EeecCCCCCcccCceEEEE--C--CEEEEEeCCCCCCCccccEEEEEeCCC-CcEEECCCCccccccccEEEE-------
Confidence            5544332221111122222  2  4456666543       3466777653 234322100000000111111       


Q ss_pred             ceeecccCCCceeEEEeeCC-----CcEEEEEEecCccc
Q 022111          165 ALVGLGLLDPVQKLASCGCD-----NTVKVWKMYNGIWK  198 (302)
Q Consensus       165 ~~~~~~~~~~~~~l~s~~~D-----~~v~iwd~~~~~~~  198 (302)
                               +++.++.||.+     +.+.+||+.+..|.
T Consensus       204 ---------~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~  233 (302)
T 2xn4_A          204 ---------NNLLYAVGGHDGPLVRKSVEVYDPTTNAWR  233 (302)
T ss_dssp             ---------TTEEEEECCBSSSSBCCCEEEEETTTTEEE
T ss_pred             ---------CCEEEEECCCCCCcccceEEEEeCCCCCEe
Confidence                     24667777664     36888998877664

>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A

Probab=93.97  E-value=2.3  Score=35.25  Aligned_cols=237  Identities=15%  Similarity=0.202  Sum_probs=112.3

Q ss_pred             ccCCCEEEEeeCC----CcEEEEeecCCCceEEEEecCcccCeEEEEeeCCCCCCEEEEEeC----C-----CeEEEEEc
Q 022111           20 DFYGKRLATASSD----SSIKIIGLSNSASQHLATLKGHRGPVWQVAWAHPKFGSILASCSY----D-----GQVIIWKE   86 (302)
Q Consensus        20 s~~~~~l~s~~~d----~~v~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~s~----D-----~~i~iwd~   86 (302)
                      ..+++.++.||.+    ..+.+||........+..+......- +++..   ++.+++.|+.    +     ..+.+||+
T Consensus        22 ~~~~~i~v~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~-~~~~~---~~~lyv~GG~~~~~~~~~~~~~~~~~d~   97 (308)
T 1zgk_A           22 KVGRLIYTAGGYFRQSLSYLEAYNPSNGTWLRLADLQVPRSGL-AGCVV---GGLLYAVGGRNNSPDGNTDSSALDCYNP   97 (308)
T ss_dssp             CCCCCEEEECCBSSSBCCCEEEEETTTTEEEECCCCSSCCBSC-EEEEE---TTEEEEECCEEEETTEEEECCCEEEEET
T ss_pred             CCCCEEEEEeCcCCCCcceEEEEcCCCCeEeECCCCCcccccc-eEEEE---CCEEEEECCCcCCCCCCeecceEEEECC
Confidence            4456777778742    35788887654443332222111111 22222   2567777765    2     35777887


Q ss_pred             CCCCceeEEEEecCCCCCeeEEEecCCCCCcEEEEEecC-----CcEEEEEecCCCCeeeee-ecccCCCCeEEEEeCCC
Q 022111           87 GNQNDWTQAHTFNDHKSSVNSIAWAPHELGLSLACGSSD-----GNISVFTATADGGWDTTR-IDQAHPVGVTSVSWAPA  160 (302)
Q Consensus        87 ~~~~~~~~~~~~~~h~~~i~~l~~~pd~~~~~l~sg~~d-----~~v~~~~~~~~~~~~~~~-~~~~h~~~v~~~~~~~~  160 (302)
                      .+. .|..+..+......-..+.+  +  +.+++.|+.+     ..+..||..+. .|.... +. ........+.+   
T Consensus        98 ~~~-~W~~~~~~p~~r~~~~~~~~--~--~~iyv~GG~~~~~~~~~~~~yd~~~~-~W~~~~~~p-~~r~~~~~~~~---  167 (308)
T 1zgk_A           98 MTN-QWSPCAPMSVPRNRIGVGVI--D--GHIYAVGGSHGCIHHNSVERYEPERD-EWHLVAPML-TRRIGVGVAVL---  167 (308)
T ss_dssp             TTT-EEEECCCCSSCCBTCEEEEE--T--TEEEEECCEETTEECCCEEEEETTTT-EEEECCCCS-SCCBSCEEEEE---
T ss_pred             CCC-eEeECCCCCcCccccEEEEE--C--CEEEEEcCCCCCcccccEEEECCCCC-eEeECCCCC-ccccceEEEEE---
Confidence            653 45444322221111222223  2  4566666543     35666766432 333211 00 00000111111   


Q ss_pred             CCCCceeecccCCCceeEEEeeCC-----CcEEEEEEecCccccccccccccCCCceeEEEeeCCCCCCccEEEEEecC-
Q 022111          161 MAPGALVGLGLLDPVQKLASCGCD-----NTVKVWKMYNGIWKMDCFPALQMHSDWVRSVAWAPNLGLPKSTIASASQD-  234 (302)
Q Consensus       161 ~~~~~~~~~~~~~~~~~l~s~~~D-----~~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~l~s~s~D-  234 (302)
                                   ++..++.||.+     +.+.+||+.+..|...  ..+......-..+.+  +    +..++.|+.+ 
T Consensus       168 -------------~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~--~~~p~~r~~~~~~~~--~----~~iyv~GG~~~  226 (308)
T 1zgk_A          168 -------------NRLLYAVGGFDGTNRLNSAECYYPERNEWRMI--TAMNTIRSGAGVCVL--H----NCIYAAGGYDG  226 (308)
T ss_dssp             -------------TTEEEEECCBCSSCBCCCEEEEETTTTEEEEC--CCCSSCCBSCEEEEE--T----TEEEEECCBCS
T ss_pred             -------------CCEEEEEeCCCCCCcCceEEEEeCCCCeEeeC--CCCCCccccceEEEE--C----CEEEEEeCCCC
Confidence                         24566667654     4588899887766421  111111111122222  2    3567777654 


Q ss_pred             ----CeEEEEEeccCCcceeeeeeccCCC---cEEEEEEccCCCEEEEecC------CceEEeeecCCceEEEeeec
Q 022111          235 ----GTVVIWTCAKEGEQWEGRVLKDFKT---PVWSVSWSLTGNLLAVADA------NNVTLWKEAVDGEWQQVSVV  298 (302)
Q Consensus       235 ----~~i~iwd~~~~~~~~~~~~~~~~~~---~v~~~~~spdg~~la~~~~------d~i~~w~~~~~~~~~~~~~~  298 (302)
                          ..+.+||+...  .|...  .....   ....+.  -++++++.|+.      +.+.+||.. ..+|.+....
T Consensus       227 ~~~~~~v~~yd~~~~--~W~~~--~~~p~~r~~~~~~~--~~~~i~v~GG~~~~~~~~~v~~yd~~-~~~W~~~~~~  296 (308)
T 1zgk_A          227 QDQLNSVERYDVETE--TWTFV--APMKHRRSALGITV--HQGRIYVLGGYDGHTFLDSVECYDPD-TDTWSEVTRM  296 (308)
T ss_dssp             SSBCCCEEEEETTTT--EEEEC--CCCSSCCBSCEEEE--ETTEEEEECCBCSSCBCCEEEEEETT-TTEEEEEEEC
T ss_pred             CCccceEEEEeCCCC--cEEEC--CCCCCCccceEEEE--ECCEEEEEcCcCCCcccceEEEEcCC-CCEEeecCCC
Confidence                45888887653  35321  11111   112222  26778788753      246778764 5689887543

>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*

Probab=93.82  E-value=2.9  Score=35.90  Aligned_cols=65  Identities=20%  Similarity=0.183  Sum_probs=42.3

Q ss_pred             ceeEEEeeCCCCCCccEEEEEecCCeEEEEEeccCCcceeeeeeccCCCcEEEEEEcc-CCCEEEEecCC
Q 022111          211 WVRSVAWAPNLGLPKSTIASASQDGTVVIWTCAKEGEQWEGRVLKDFKTPVWSVSWSL-TGNLLAVADAN  279 (302)
Q Consensus       211 ~v~~v~~~p~~~~~~~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp-dg~~la~~~~d  279 (302)
                      .-+.|+|+||+   ....++-+..+.|..|+++..+.....+.. ......-.++..+ +|++.+++.-+
T Consensus       222 ~pNGia~spDg---~~lYvadt~~~~I~~~~~~~~g~l~~~~~~-~~~g~PDGi~vD~e~G~lwva~~~~  287 (355)
T 3sre_A          222 FANGINISPDG---KYVYIAELLAHKIHVYEKHANWTLTPLRVL-SFDTLVDNISVDPVTGDLWVGCHPN  287 (355)
T ss_dssp             SEEEEEECTTS---SEEEEEEGGGTEEEEEEECTTSCEEEEEEE-ECSSEEEEEEECTTTCCEEEEEESC
T ss_pred             ccCcceECCCC---CEEEEEeCCCCeEEEEEECCCCcEecCEEE-eCCCCCceEEEeCCCCcEEEEecCC
Confidence            35889999996   245666667889999998743222111222 3344567788888 59888766434

>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}

Probab=93.58  E-value=2.6  Score=34.71  Aligned_cols=189  Identities=14%  Similarity=0.146  Sum_probs=89.7

Q ss_pred             CCCEEEEeeCC----CcEEEEeecCCCceEEEEecCcccCeEEEEeeCCCCCCEEEEEeCC------CeEEEEEcCCCCc
Q 022111           22 YGKRLATASSD----SSIKIIGLSNSASQHLATLKGHRGPVWQVAWAHPKFGSILASCSYD------GQVIIWKEGNQND   91 (302)
Q Consensus        22 ~~~~l~s~~~d----~~v~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~s~D------~~i~iwd~~~~~~   91 (302)
                      +++.++.||.+    ..+.+||........+..+......-..+.+    ++++++.|+.+      ..+.+||+.+. .
T Consensus        55 ~~~lyv~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~----~~~iyv~GG~~~~~~~~~~~~~~d~~~~-~  129 (306)
T 3ii7_A           55 DNVVYILGGSQLFPIKRMDCYNVVKDSWYSKLGPPTPRDSLAACAA----EGKIYTSGGSEVGNSALYLFECYDTRTE-S  129 (306)
T ss_dssp             TTEEEEECCBSSSBCCEEEEEETTTTEEEEEECCSSCCBSCEEEEE----TTEEEEECCBBTTBSCCCCEEEEETTTT-E
T ss_pred             CCEEEEEeCCCCCCcceEEEEeCCCCeEEECCCCCccccceeEEEE----CCEEEEECCCCCCCcEeeeEEEEeCCCC-c
Confidence            56777788755    5677888765544444333211111112222    25777787765      45788888653 4


Q ss_pred             eeEEEEecCCCCCeeEEEecCCCCCcEEEEEec---------CCcEEEEEecCCCCeeeeeecccCCCCeEEEEeCCCCC
Q 022111           92 WTQAHTFNDHKSSVNSIAWAPHELGLSLACGSS---------DGNISVFTATADGGWDTTRIDQAHPVGVTSVSWAPAMA  162 (302)
Q Consensus        92 ~~~~~~~~~h~~~i~~l~~~pd~~~~~l~sg~~---------d~~v~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~  162 (302)
                      |..+..+......-..+.+  +  +.+++.|+.         -..+.+||..+. .|...............+..     
T Consensus       130 W~~~~~~p~~r~~~~~~~~--~--~~iyv~GG~~~~~~~~~~~~~~~~yd~~~~-~W~~~~~~p~~r~~~~~~~~-----  199 (306)
T 3ii7_A          130 WHTKPSMLTQRCSHGMVEA--N--GLIYVCGGSLGNNVSGRVLNSCEVYDPATE-TWTELCPMIEARKNHGLVFV-----  199 (306)
T ss_dssp             EEEECCCSSCCBSCEEEEE--T--TEEEEECCEESCTTTCEECCCEEEEETTTT-EEEEECCCSSCCBSCEEEEE-----
T ss_pred             eEeCCCCcCCcceeEEEEE--C--CEEEEECCCCCCCCcccccceEEEeCCCCC-eEEECCCccchhhcceEEEE-----
Confidence            5544332211111122222  2  445666653         234667776532 34322100000000111111     


Q ss_pred             CCceeecccCCCceeEEEeeCC-----CcEEEEEEecCccccccccccccCCCceeEEEeeCCCCCCccEEEEEecC---
Q 022111          163 PGALVGLGLLDPVQKLASCGCD-----NTVKVWKMYNGIWKMDCFPALQMHSDWVRSVAWAPNLGLPKSTIASASQD---  234 (302)
Q Consensus       163 ~~~~~~~~~~~~~~~l~s~~~D-----~~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~l~s~s~D---  234 (302)
                                 +++.++.||.+     ..+.+||+.+..|...  ..+........++.+  +    +..++.|+.+   
T Consensus       200 -----------~~~i~v~GG~~~~~~~~~~~~yd~~~~~W~~~--~~~p~~r~~~~~~~~--~----~~i~v~GG~~~~~  260 (306)
T 3ii7_A          200 -----------KDKIFAVGGQNGLGGLDNVEYYDIKLNEWKMV--SPMPWKGVTVKCAAV--G----SIVYVLAGFQGVG  260 (306)
T ss_dssp             -----------TTEEEEECCEETTEEBCCEEEEETTTTEEEEC--CCCSCCBSCCEEEEE--T----TEEEEEECBCSSS
T ss_pred             -----------CCEEEEEeCCCCCCCCceEEEeeCCCCcEEEC--CCCCCCccceeEEEE--C----CEEEEEeCcCCCe
Confidence                       24566666653     3578899887766422  111111111122222  2    3567777654   


Q ss_pred             --CeEEEEEecc
Q 022111          235 --GTVVIWTCAK  244 (302)
Q Consensus       235 --~~i~iwd~~~  244 (302)
                        ..+.+||...
T Consensus       261 ~~~~~~~yd~~~  272 (306)
T 3ii7_A          261 RLGHILEYNTET  272 (306)
T ss_dssp             BCCEEEEEETTT
T ss_pred             eeeeEEEEcCCC
Confidence              4577777654

>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*

Probab=92.87  E-value=5.6  Score=36.45  Aligned_cols=55  Identities=15%  Similarity=0.236  Sum_probs=30.6

Q ss_pred             cCCeEEEEEeccCCcceeeeeeccCCCcEEEEEEccCCCEEEEecCC-ceEEeeecCCce
Q 022111          233 QDGTVVIWTCAKEGEQWEGRVLKDFKTPVWSVSWSLTGNLLAVADAN-NVTLWKEAVDGE  291 (302)
Q Consensus       233 ~D~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~la~~~~d-~i~~w~~~~~~~  291 (302)
                      .++.|..||..+.+..|....    ..++++..+...+.++.+++.+ .++.+|......
T Consensus       442 ~~g~l~a~D~~tG~~~W~~~~----~~~~~~~~~~t~gg~v~~g~~dg~l~a~D~~tG~~  497 (571)
T 2ad6_A          442 EMGQIRAFDLTTGKAKWTKWE----KFAAWGGTLYTKGGLVWYATLDGYLKALDNKDGKE  497 (571)
T ss_dssp             CCEEEEEECTTTCCEEEEEEE----SSCCCSBCEEETTTEEEEECTTSEEEEEETTTCCE
T ss_pred             CCCeEEEEECCCCCEEEEecC----CCCccceeEEECCCEEEEEcCCCeEEEEECCCCCE
Confidence            357788888876554454322    1222332333345556566666 688898754443

>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A

Probab=92.80  E-value=4.2  Score=34.81  Aligned_cols=190  Identities=13%  Similarity=0.237  Sum_probs=104.2

Q ss_pred             EEEEEeCCCeEEEEEcCCCCceeEEEEecCCCCCeeEEEecCCC--CC----cEEEEEec--CCcEEEEEecCC-CCeee
Q 022111           71 ILASCSYDGQVIIWKEGNQNDWTQAHTFNDHKSSVNSIAWAPHE--LG----LSLACGSS--DGNISVFTATAD-GGWDT  141 (302)
Q Consensus        71 ~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~h~~~i~~l~~~pd~--~~----~~l~sg~~--d~~v~~~~~~~~-~~~~~  141 (302)
                      +++.....+-+.+||+. ++   .++.+..  +.++.++.-|+-  .+    ..+++...  +++|.+|++... +.+  
T Consensus        42 ~ii~t~k~~gL~Vydl~-G~---~l~~~~~--g~~nnVD~r~~~~l~g~~~dla~as~R~~~~n~l~vf~iDp~~~~l--  113 (355)
T 3amr_A           42 KLITTNKKSGLVVYSLD-GK---MLHSYNT--GKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNGTL--  113 (355)
T ss_dssp             EEEEEETTTEEEEEETT-SC---EEEEECC--SCEEEEEEEEEEEETTEEEEEEEEEECSTTCCEEEEEEECTTTCCE--
T ss_pred             EEEEEcCCCCEEEEcCC-Cc---EEEEccC--CCcccEEEecccccCCceEeEEEEeCCCCCCCeEEEEEECCCCCce--
Confidence            45555677889999994 32   4555542  567777776630  01    12444444  689999988532 222  


Q ss_pred             eeeccc-----CC-CCeEEEEe--CCCCCCCceeecccCCCceeEEEeeCCCcEEEEEEec---CccccccccccccCCC
Q 022111          142 TRIDQA-----HP-VGVTSVSW--APAMAPGALVGLGLLDPVQKLASCGCDNTVKVWKMYN---GIWKMDCFPALQMHSD  210 (302)
Q Consensus       142 ~~~~~~-----h~-~~v~~~~~--~~~~~~~~~~~~~~~~~~~~l~s~~~D~~v~iwd~~~---~~~~~~~~~~~~~h~~  210 (302)
                      ..+...     .. ..+..++.  +|..            ...+++....++.+..|++..   +....+.+++|.. .+
T Consensus       114 ~~i~~~~~pv~t~~~~pyGlcly~~~~~------------g~~yafV~~k~G~~~q~~l~~~~~g~~~~~lVR~f~l-gs  180 (355)
T 3amr_A          114 QSMTDPDHPIATAINEVYGFTLYHSQKT------------GKYYAMVTGKEGEFEQYELKADKNGYISGKKVRAFKM-NS  180 (355)
T ss_dssp             EECSCTTSCEECCCSSCCCEEEEECTTT------------CCEEEEEECSSSEEEEEEEEECTTSCEEEEEEEEEEC-SS
T ss_pred             eeccccccCcCCCCCCeeEEEEEecCCC------------CcEEEEEECCCCeEEEEEEEeCCCCcccceEEEEecC-CC
Confidence            121100     00 12222333  3321            112566777789999999853   2122234455543 34


Q ss_pred             ceeEEEeeCCCCCCccEEEEEecCCeEEEEEeccCCcc-eeeeee-----ccCCCcEEEEEE--ccCCC-EEEEecC--C
Q 022111          211 WVRSVAWAPNLGLPKSTIASASQDGTVVIWTCAKEGEQ-WEGRVL-----KDFKTPVWSVSW--SLTGN-LLAVADA--N  279 (302)
Q Consensus       211 ~v~~v~~~p~~~~~~~~l~s~s~D~~i~iwd~~~~~~~-~~~~~~-----~~~~~~v~~~~~--spdg~-~la~~~~--d  279 (302)
                      .+..+...+..    .+|..+-+|..  ||.+.-.... ....+.     ......+-.|++  .++|+ +|++++.  +
T Consensus       181 q~EgcvvDd~~----g~Lyv~eEd~G--Iw~~da~p~~~~~~~~v~~~~~g~l~aDvEGLai~~~~~g~gyLivSsQG~~  254 (355)
T 3amr_A          181 QTEGMAADDEY----GRLYIAEEDEA--IWKFSAEPDGGSNGTVIDRADGRHLTRDIEGLTIYYAADGKGYLMASSQGNS  254 (355)
T ss_dssp             CEEEEEEETTT----TEEEEEETTTE--EEEEECSTTSCSCCEEEEEBSSSSBCSCEEEEEEEECGGGCEEEEEEEGGGT
T ss_pred             CcceEEEcCCC----CeEEEecccce--EEEEeCCcCCCCCceEEEEecCCccccCcceEEEEecCCCCEEEEEEcCCCC
Confidence            57777888764    67888888866  5555422110 001111     223345777877  56666 6666653  3


Q ss_pred             ceEEeeec
Q 022111          280 NVTLWKEA  287 (302)
Q Consensus       280 ~i~~w~~~  287 (302)
                      ...+|+..
T Consensus       255 s~~Vydr~  262 (355)
T 3amr_A          255 SYAIYDRQ  262 (355)
T ss_dssp             EEEEEESS
T ss_pred             EEEEEECC
Confidence            79999985

>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1

Probab=92.78  E-value=3.8  Score=34.23  Aligned_cols=223  Identities=8%  Similarity=-0.063  Sum_probs=114.0

Q ss_pred             CCcEEEEeecCCCceEEEEecCcccCeEEEEeeCCCCCCEEEEEeCCCeEEEEEcCCCCc-eeEEEEecCCCCCeeEEEe
Q 022111           32 DSSIKIIGLSNSASQHLATLKGHRGPVWQVAWAHPKFGSILASCSYDGQVIIWKEGNQND-WTQAHTFNDHKSSVNSIAW  110 (302)
Q Consensus        32 d~~v~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~s~D~~i~iwd~~~~~~-~~~~~~~~~h~~~i~~l~~  110 (302)
                      ...|+..++.......  .+. .......+.|.+. .+.++.+-...+.|..+++..... ......+.........+++
T Consensus         9 ~~~I~~i~~~~~~~~~--~~~-~~~~p~g~~~d~~-~~~ly~~D~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~glav   84 (316)
T 1ijq_A            9 RHEVRKMTLDRSEYTS--LIP-NLRNVVALDTEVA-SNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAV   84 (316)
T ss_dssp             BSSEEEEETTSCCCEE--EEC-SCSSEEEEEEETT-TTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEE
T ss_pred             CCeEEEEECCCcceEe--hhc-CCCceEEEEEEeC-CCEEEEEECCCCcEEEEECCCCCCCcccEEEEeCCCCCcCEEEE
Confidence            4568888876543222  222 2335678899754 356666767788999998764100 0011112222244578888


Q ss_pred             cCCCCCcEEEEEecCCcEEEEEecCCCCeeeeeecccCCCCeEEEEeCCCCCCCceeecccCCCceeEEEeeCC-CcEEE
Q 022111          111 APHELGLSLACGSSDGNISVFTATADGGWDTTRIDQAHPVGVTSVSWAPAMAPGALVGLGLLDPVQKLASCGCD-NTVKV  189 (302)
Q Consensus       111 ~pd~~~~~l~sg~~d~~v~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~D-~~v~i  189 (302)
                      .+.. +.+..+-...+.|.+++....  .....+. ........++..|..             +..+++.... +.|..
T Consensus        85 d~~~-~~ly~~d~~~~~I~~~~~~g~--~~~~~~~-~~~~~P~~iavdp~~-------------g~ly~~d~~~~~~I~~  147 (316)
T 1ijq_A           85 DWIH-SNIYWTDSVLGTVSVADTKGV--KRKTLFR-ENGSKPRAIVVDPVH-------------GFMYWTDWGTPAKIKK  147 (316)
T ss_dssp             ETTT-TEEEEEETTTTEEEEEETTSS--SEEEEEE-CTTCCEEEEEEETTT-------------TEEEEEECSSSCEEEE
T ss_pred             eecC-CeEEEEECCCCEEEEEeCCCC--ceEEEEE-CCCCCcceEEeCCCC-------------CEEEEEccCCCCeEEE
Confidence            7542 344455456678888776421  1111111 112234566666532             3444554333 56777


Q ss_pred             EEEecCccccccccccccCCCceeEEEeeCCCCCCccEEEEEecCCeEEEEEeccCCcceeeeeec--cCCCcEEEEEEc
Q 022111          190 WKMYNGIWKMDCFPALQMHSDWVRSVAWAPNLGLPKSTIASASQDGTVVIWTCAKEGEQWEGRVLK--DFKTPVWSVSWS  267 (302)
Q Consensus       190 wd~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~--~~~~~v~~~~~s  267 (302)
                      .++.....  ..+  ....-.+-+.|+++|++   +...++-+..+.|..+|++....   ..+..  .......++++.
T Consensus       148 ~~~dG~~~--~~~--~~~~~~~P~gla~d~~~---~~lY~~D~~~~~I~~~d~dg~~~---~~~~~~~~~~~~P~giav~  217 (316)
T 1ijq_A          148 GGLNGVDI--YSL--VTENIQWPNGITLDLLS---GRLYWVDSKLHSISSIDVNGGNR---KTILEDEKRLAHPFSLAVF  217 (316)
T ss_dssp             EETTSCCE--EEE--ECSSCSCEEEEEEETTT---TEEEEEETTTTEEEEEETTSCSC---EEEEECTTTTSSEEEEEEE
T ss_pred             EcCCCCCe--EEE--EECCCCCceEEEEeccC---CEEEEEECCCCeEEEEecCCCce---EEEeecCCccCCcEEEEEE
Confidence            76643211  111  01122456899999875   35566666778899999864321   11211  112335677774


Q ss_pred             cCCCEEEEecCC-ceEEeee
Q 022111          268 LTGNLLAVADAN-NVTLWKE  286 (302)
Q Consensus       268 pdg~~la~~~~d-~i~~w~~  286 (302)
                       .+.++.+.... .|..++.
T Consensus       218 -~~~ly~~d~~~~~V~~~~~  236 (316)
T 1ijq_A          218 -EDKVFWTDIINEAIFSANR  236 (316)
T ss_dssp             -TTEEEEEETTTTEEEEEET
T ss_pred             -CCEEEEEECCCCeEEEEeC
Confidence             34444433333 5666664

>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}

Probab=92.67  E-value=3.6  Score=33.74  Aligned_cols=151  Identities=13%  Similarity=0.227  Sum_probs=75.6

Q ss_pred             CCCEEEEeeCC-----CcEEEEeecCCC---ceEEEEecCcccCeEEEEeeCCCCCCEEEEEeCC-----CeEEEEEcCC
Q 022111           22 YGKRLATASSD-----SSIKIIGLSNSA---SQHLATLKGHRGPVWQVAWAHPKFGSILASCSYD-----GQVIIWKEGN   88 (302)
Q Consensus        22 ~~~~l~s~~~d-----~~v~lw~~~~~~---~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~s~D-----~~i~iwd~~~   88 (302)
                      +++.++.||.+     ..+.+||.....   ...+..+......- ++...   ++++++.|+.+     ..+.+||+.+
T Consensus        62 ~~~l~v~GG~~~~~~~~~~~~~d~~~~~~~~W~~~~~~p~~r~~~-~~~~~---~~~lyv~GG~~~~~~~~~~~~~d~~~  137 (301)
T 2vpj_A           62 HDRIYVIGGYDGRSRLSSVECLDYTADEDGVWYSVAPMNVRRGLA-GATTL---GDMIYVSGGFDGSRRHTSMERYDPNI  137 (301)
T ss_dssp             TTEEEEECCBCSSCBCCCEEEEETTCCTTCCCEEECCCSSCCBSC-EEEEE---TTEEEEECCBCSSCBCCEEEEEETTT
T ss_pred             CCEEEEEcCCCCCccCceEEEEECCCCCCCeeEECCCCCCCccce-eEEEE---CCEEEEEcccCCCcccceEEEEcCCC
Confidence            56777778755     458888876655   44443332211111 22222   25777777654     3577888765


Q ss_pred             CCceeEEEEecCCCCCeeEEEecCCCCCcEEEEEecC-----CcEEEEEecCCCCeeeeeecccCCCCeEEEEeCCCCCC
Q 022111           89 QNDWTQAHTFNDHKSSVNSIAWAPHELGLSLACGSSD-----GNISVFTATADGGWDTTRIDQAHPVGVTSVSWAPAMAP  163 (302)
Q Consensus        89 ~~~~~~~~~~~~h~~~i~~l~~~pd~~~~~l~sg~~d-----~~v~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~  163 (302)
                       ..|..+.........-.++.+  +  +.+++.|+.+     ..+..||..+. .|...............+.+      
T Consensus       138 -~~W~~~~~~p~~r~~~~~~~~--~--~~iyv~GG~~~~~~~~~~~~~d~~~~-~W~~~~~~p~~r~~~~~~~~------  205 (301)
T 2vpj_A          138 -DQWSMLGDMQTAREGAGLVVA--S--GVIYCLGGYDGLNILNSVEKYDPHTG-HWTNVTPMATKRSGAGVALL------  205 (301)
T ss_dssp             -TEEEEEEECSSCCBSCEEEEE--T--TEEEEECCBCSSCBCCCEEEEETTTT-EEEEECCCSSCCBSCEEEEE------
T ss_pred             -CeEEECCCCCCCcccceEEEE--C--CEEEEECCCCCCcccceEEEEeCCCC-cEEeCCCCCcccccceEEEE------
Confidence             346655443322111222222  2  4566676654     35667776532 34322100000000111111      


Q ss_pred             CceeecccCCCceeEEEeeCC-----CcEEEEEEecCccc
Q 022111          164 GALVGLGLLDPVQKLASCGCD-----NTVKVWKMYNGIWK  198 (302)
Q Consensus       164 ~~~~~~~~~~~~~~l~s~~~D-----~~v~iwd~~~~~~~  198 (302)
                                ++..++.||.+     ..+.+||+.+..|.
T Consensus       206 ----------~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~  235 (301)
T 2vpj_A          206 ----------NDHIYVVGGFDGTAHLSSVEAYNIRTDSWT  235 (301)
T ss_dssp             ----------TTEEEEECCBCSSSBCCCEEEEETTTTEEE
T ss_pred             ----------CCEEEEEeCCCCCcccceEEEEeCCCCcEE
Confidence                      24667777664     46889998877664

>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*

Probab=92.45  E-value=6.4  Score=36.07  Aligned_cols=49  Identities=14%  Similarity=0.127  Sum_probs=30.3

Q ss_pred             cEEEEEecCCeEEEEEeccCCcceeeeeeccCCCcEEEEEEccCCCEEEEe
Q 022111          226 STIASASQDGTVVIWTCAKEGEQWEGRVLKDFKTPVWSVSWSLTGNLLAVA  276 (302)
Q Consensus       226 ~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~la~~  276 (302)
                      ..+..++.|+.|+.+|.++.+..|...+.....  ...+.|.++|++++..
T Consensus       476 g~v~~g~~dg~l~a~D~~tG~~lw~~~~~~~~~--~~p~~~~~~G~~yv~~  524 (571)
T 2ad6_A          476 GLVWYATLDGYLKALDNKDGKELWNFKMPSGGI--GSPMTYSFKGKQYIGS  524 (571)
T ss_dssp             TEEEEECTTSEEEEEETTTCCEEEEEECSSCCC--SCCEEEEETTEEEEEE
T ss_pred             CEEEEEcCCCeEEEEECCCCCEEEEEeCCCCcE--eeeEEEEECCEEEEEE
Confidence            567778999999999998765555433221111  1223466888766544

>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}

Probab=92.41  E-value=4.5  Score=34.26  Aligned_cols=161  Identities=7%  Similarity=0.113  Sum_probs=83.5

Q ss_pred             EEEEeeCCCCCCEEEEEeCCCeEEEEEcCCCCceeEEEEecC----CCC--CeeEEEe---cCCCCCcEEEEEe------
Q 022111           59 WQVAWAHPKFGSILASCSYDGQVIIWKEGNQNDWTQAHTFND----HKS--SVNSIAW---APHELGLSLACGS------  123 (302)
Q Consensus        59 ~~v~~~~~~~~~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~----h~~--~i~~l~~---~pd~~~~~l~sg~------  123 (302)
                      -+++|... .+.++++.-..++|..||...+.. ..+ .+.+    .+.  .+..|.|   -|+  +.++++..      
T Consensus        16 E~~~wd~~-~g~~~vs~l~~g~V~~~~~~~~~~-~~~-~~~~~s~~g~~~~~~sGl~~~~~D~~--grL~vv~~~~~af~   90 (334)
T 2p9w_A           16 EDTIYDRT-RQVFYQSNLYKGRIEVYNPKTQSH-FNV-VIDGASSNGDGEQQMSGLSLLTHDNS--KRLFAVMKNAKSFN   90 (334)
T ss_dssp             SCEEEETT-TTEEEEEETTTTEEEEECTTTCCE-EEE-CCTTTCCSSCCSEEEEEEEESSSSSC--CEEEEEEEETTTTC
T ss_pred             cCccCcCC-CCEEEEEeccCCEEEEEcCCCCeE-EEE-ecCCccccCCCcceeeEEEEeccCCC--CcEEEEEccccccc
Confidence            35788543 466666666899999999864321 222 3332    111  3578888   465  55666543      


Q ss_pred             -------cCCcEEEEEec---CCCCeeeeeecc---c-------CCCCeEEEEeCCCCCCCceeecccCCCceeEEEeeC
Q 022111          124 -------SDGNISVFTAT---ADGGWDTTRIDQ---A-------HPVGVTSVSWAPAMAPGALVGLGLLDPVQKLASCGC  183 (302)
Q Consensus       124 -------~d~~v~~~~~~---~~~~~~~~~~~~---~-------h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~  183 (302)
                             .++.+..||+.   +........+..   +       -......++..++              |...++++.
T Consensus        91 ~~g~~~~g~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~~--------------GnaYVt~s~  156 (334)
T 2p9w_A           91 FADQSSHGASSFHSFNLPLSENSKPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQDRD--------------GNSYVAFAL  156 (334)
T ss_dssp             TTSCCSSSCCEEEEEESSCCTTCCCSEEEESHHHHHHHHHHHSSCCEEEEEEEECTT--------------SCEEEEEEE
T ss_pred             ccccccCCCCEEEEEcCCcCCCCCEEEEecCccccccccccccccccCCceeEECCC--------------CCEEEeCCC
Confidence                   26778889876   333222122110   0       0112444554443              355555555


Q ss_pred             C-CcEEEEEEecCccccccc---cccccCCCceeEEEeeCCCCCCccEEEEEecCCeEEEEEecc
Q 022111          184 D-NTVKVWKMYNGIWKMDCF---PALQMHSDWVRSVAWAPNLGLPKSTIASASQDGTVVIWTCAK  244 (302)
Q Consensus       184 D-~~v~iwd~~~~~~~~~~~---~~~~~h~~~v~~v~~~p~~~~~~~~l~s~s~D~~i~iwd~~~  244 (302)
                      . +.|...+....  .....   ..........+.|+++|++    +.|+....++.|.-+|+..
T Consensus       157 ~~~~I~rV~pdG~--~~~~~~~~~~~~~~~~G~nGIv~~pdg----~~Liv~~~~g~L~~fD~~~  215 (334)
T 2p9w_A          157 GMPAIARVSADGK--TVSTFAWESGNGGQRPGYSGITFDPHS----NKLIAFGGPRALTAFDVSK  215 (334)
T ss_dssp             SSCEEEEECTTSC--CEEEEEECCCCSSSCCSCSEEEEETTT----TEEEEESSSSSEEEEECSS
T ss_pred             CCCeEEEEeCCCC--EEeeeeecCCCcccccCcceEEEeCCC----CEEEEEcCCCeEEEEcCCC
Confidence            4 44333332211  00000   0001112335789999996    4555554499999999874

>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}

Probab=92.41  E-value=8  Score=37.07  Aligned_cols=201  Identities=10%  Similarity=-0.021  Sum_probs=99.4

Q ss_pred             ceeEEEEccCCCEEE-EeeCCCcEEEEeecCCCc--eEEEEecCcccCeEEEEeeCCCCCCEEEEEeCCCeEEEEEcCCC
Q 022111           13 TVHDVAMDFYGKRLA-TASSDSSIKIIGLSNSAS--QHLATLKGHRGPVWQVAWAHPKFGSILASCSYDGQVIIWKEGNQ   89 (302)
Q Consensus        13 ~v~~~~~s~~~~~l~-s~~~d~~v~lw~~~~~~~--~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~s~D~~i~iwd~~~~   89 (302)
                      .+..++|++....|+ +-...+.|+.+++.....  .....+.........|++... .++++++-...+.|.+.++...
T Consensus       425 ~~~gl~~d~~~~~lY~sD~~~~~I~~~~l~g~~~~~~~~~vi~~~l~~P~GLAvD~~-~~~LY~tD~~~~~I~v~~ldG~  503 (791)
T 3m0c_C          425 NVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWI-HSNIYWTDSVLGTVSVADTKGV  503 (791)
T ss_dssp             SEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEETT-TTEEEEEETTTTEEEEEETTSS
T ss_pred             ceEEEeecccCCeeEEeeccceeEEEEeccCCCCCcceeEEEecCCCCcceeeeeec-CCcEEEEecCCCeEEEEeCCCC
Confidence            456778887544444 444556777777753210  111222222334557777543 2467777778889999988654


Q ss_pred             CceeEEEEecCCCCCeeEEEecCCCCCcEEEEEecC--CcEEEEEecCCCCeeeeeecccCCCCeEEEEeCCCCCCCcee
Q 022111           90 NDWTQAHTFNDHKSSVNSIAWAPHELGLSLACGSSD--GNISVFTATADGGWDTTRIDQAHPVGVTSVSWAPAMAPGALV  167 (302)
Q Consensus        90 ~~~~~~~~~~~h~~~i~~l~~~pd~~~~~l~sg~~d--~~v~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~  167 (302)
                      .. ..  .+.........|++.|.. +. |......  ..|...++.  +......+. ........|+..+..      
T Consensus       504 ~~-~~--l~~~~l~~P~gIaVDp~~-g~-LYwtD~g~~~~I~~~~~d--G~~~~~lv~-~~l~~P~GLavD~~~------  569 (791)
T 3m0c_C          504 KR-KT--LFRENGSKPRAIVVDPVH-GF-MYWTDWGTPAKIKKGGLN--GVDIYSLVT-ENIQWPNGITLDLLS------  569 (791)
T ss_dssp             SE-EE--EEECTTCCEEEEEEETTT-TE-EEEEECSSSCEEEEEETT--SCCEEEEEC-SSCSCEEEEEEETTT------
T ss_pred             eE-EE--EEeCCCCCcceEEEecCC-CC-EEEecCCCCCeEEEEecC--CCceEEEEe-CCCCCceEEEEecCC------
Confidence            22 11  122234457899998863 33 4433332  456655543  221111111 122234556665432      


Q ss_pred             ecccCCCceeEEEeeCCCcEEEEEEecCccccccccccccCCCceeEEEeeCCCCCCccEEEEEecCCeEEEEEe
Q 022111          168 GLGLLDPVQKLASCGCDNTVKVWKMYNGIWKMDCFPALQMHSDWVRSVAWAPNLGLPKSTIASASQDGTVVIWTC  242 (302)
Q Consensus       168 ~~~~~~~~~~l~s~~~D~~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~l~s~s~D~~i~iwd~  242 (302)
                             +.++++-.....|...++...... ..+.. .+.-.....|++..+     ..+++-...+.|...|.
T Consensus       570 -------~~LYwaD~~~~~I~~~d~dG~~~~-~v~~~-~~~l~~P~glav~~~-----~lYwtD~~~~~I~~~dk  630 (791)
T 3m0c_C          570 -------GRLYWVDSKLHSISSIDVNGGNRK-TILED-EKRLAHPFSLAVFED-----KVFWTDIINEAIFSANR  630 (791)
T ss_dssp             -------TEEEEEETTTTEEEEEETTSCSCE-EEEEC-TTTTSSEEEEEEETT-----EEEEEETTTTEEEEEET
T ss_pred             -------CeEEEEeCCCCcEEEEecCCCceE-EEecC-CCccCCCCEEEEeCC-----EEEEEECCCCEEEEEeC
Confidence                   345555556677888887543211 11110 011122345555332     44555556666666654

>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1

Probab=92.39  E-value=5.2  Score=36.77  Aligned_cols=22  Identities=14%  Similarity=0.071  Sum_probs=18.5

Q ss_pred             ceeEEEeeCCCcEEEEEEecCc
Q 022111          175 VQKLASCGCDNTVKVWKMYNGI  196 (302)
Q Consensus       175 ~~~l~s~~~D~~v~iwd~~~~~  196 (302)
                      +.+++.++.|+.++.||.++++
T Consensus       497 gglvf~g~~dg~l~A~D~~tG~  518 (582)
T 1flg_A          497 GNLVFTGTGDGYFKAFDAKSGK  518 (582)
T ss_dssp             TTEEEEECTTSEEEEEETTTCC
T ss_pred             CCEEEEECCCCcEEEEECCCCC
Confidence            4567779999999999998874

>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*

Probab=92.37  E-value=6.8  Score=36.19  Aligned_cols=49  Identities=10%  Similarity=0.196  Sum_probs=31.5

Q ss_pred             cEEEEEecCCeEEEEEeccCCcceeeeeeccCCCcEEEEEEccCCCE-EEEe
Q 022111          226 STIASASQDGTVVIWTCAKEGEQWEGRVLKDFKTPVWSVSWSLTGNL-LAVA  276 (302)
Q Consensus       226 ~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~-la~~  276 (302)
                      ..+..++.|+.|+.||.++.+..|..++.....  ..-+.|..+|++ +++.
T Consensus       485 g~vf~gt~dg~l~A~D~~tG~~lW~~~l~~g~~--~~P~~y~~~G~qyv~~~  534 (599)
T 1w6s_A          485 DLVFYGTLDGYLKARDSDTGDLLWKFKIPSGAI--GYPMTYTHKGTQYVAIY  534 (599)
T ss_dssp             TEEEEECTTSEEEEEETTTCCEEEEEECSSCCC--SCCEEEEETTEEEEEEE
T ss_pred             CEEEEECCCCeEEEEECCCCCEEEEeeCCCCcE--eccEEEEeCCEEEEEEE
Confidence            567779999999999998876666544322221  122556678874 4443

>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1

Probab=92.19  E-value=4.5  Score=33.74  Aligned_cols=203  Identities=10%  Similarity=-0.043  Sum_probs=105.3

Q ss_pred             ceeEEEEccCCCEEE-EeeCCCcEEEEeecCCC--ceEEEEecCcccCeEEEEeeCCCCCCEEEEEeCCCeEEEEEcCCC
Q 022111           13 TVHDVAMDFYGKRLA-TASSDSSIKIIGLSNSA--SQHLATLKGHRGPVWQVAWAHPKFGSILASCSYDGQVIIWKEGNQ   89 (302)
Q Consensus        13 ~v~~~~~s~~~~~l~-s~~~d~~v~lw~~~~~~--~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~s~D~~i~iwd~~~~   89 (302)
                      ....+.|++.+..|. +-...+.|+.++.....  ......+...-.....+++... .++++++-...+.|.+.++...
T Consensus        31 ~p~g~~~d~~~~~ly~~D~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~glavd~~-~~~ly~~d~~~~~I~~~~~~g~  109 (316)
T 1ijq_A           31 NVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWI-HSNIYWTDSVLGTVSVADTKGV  109 (316)
T ss_dssp             SEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEETT-TTEEEEEETTTTEEEEEETTSS
T ss_pred             ceEEEEEEeCCCEEEEEECCCCcEEEEECCCCCCCcccEEEEeCCCCCcCEEEEeec-CCeEEEEECCCCEEEEEeCCCC
Confidence            345788887655454 44456788888875410  0111112222223467787543 3566677677889999987643


Q ss_pred             CceeEEEEecCCCCCeeEEEecCCCCCcEEEEEecC-CcEEEEEecCCCCeeeeeecccCCCCeEEEEeCCCCCCCceee
Q 022111           90 NDWTQAHTFNDHKSSVNSIAWAPHELGLSLACGSSD-GNISVFTATADGGWDTTRIDQAHPVGVTSVSWAPAMAPGALVG  168 (302)
Q Consensus        90 ~~~~~~~~~~~h~~~i~~l~~~pd~~~~~l~sg~~d-~~v~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~  168 (302)
                      .. ..+  +.........+++.|.. +.++.+.... +.|..++..  +........ ........++++|+.       
T Consensus       110 ~~-~~~--~~~~~~~P~~iavdp~~-g~ly~~d~~~~~~I~~~~~d--G~~~~~~~~-~~~~~P~gla~d~~~-------  175 (316)
T 1ijq_A          110 KR-KTL--FRENGSKPRAIVVDPVH-GFMYWTDWGTPAKIKKGGLN--GVDIYSLVT-ENIQWPNGITLDLLS-------  175 (316)
T ss_dssp             SE-EEE--EECTTCCEEEEEEETTT-TEEEEEECSSSCEEEEEETT--SCCEEEEEC-SSCSCEEEEEEETTT-------
T ss_pred             ce-EEE--EECCCCCcceEEeCCCC-CEEEEEccCCCCeEEEEcCC--CCCeEEEEE-CCCCCceEEEEeccC-------
Confidence            21 111  22233567899998863 4444443222 566665543  221111111 112235677777643       


Q ss_pred             cccCCCceeEEEeeCCCcEEEEEEecCccccccccccccCCCceeEEEeeCCCCCCccEEEEEecCCeEEEEEec
Q 022111          169 LGLLDPVQKLASCGCDNTVKVWKMYNGIWKMDCFPALQMHSDWVRSVAWAPNLGLPKSTIASASQDGTVVIWTCA  243 (302)
Q Consensus       169 ~~~~~~~~~l~s~~~D~~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~l~s~s~D~~i~iwd~~  243 (302)
                            +.++++-+..+.|..+|+.....  ..+......-..-..|++..     +..+.+-...+.|..++..
T Consensus       176 ------~~lY~~D~~~~~I~~~d~dg~~~--~~~~~~~~~~~~P~giav~~-----~~ly~~d~~~~~V~~~~~~  237 (316)
T 1ijq_A          176 ------GRLYWVDSKLHSISSIDVNGGNR--KTILEDEKRLAHPFSLAVFE-----DKVFWTDIINEAIFSANRL  237 (316)
T ss_dssp             ------TEEEEEETTTTEEEEEETTSCSC--EEEEECTTTTSSEEEEEEET-----TEEEEEETTTTEEEEEETT
T ss_pred             ------CEEEEEECCCCeEEEEecCCCce--EEEeecCCccCCcEEEEEEC-----CEEEEEECCCCeEEEEeCC
Confidence                  35566666777899988764311  11111111122345666642     2556666667778777753

>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}

Probab=92.13  E-value=6.4  Score=35.39  Aligned_cols=161  Identities=14%  Similarity=0.143  Sum_probs=82.2

Q ss_pred             ceeEEEEcc-CCCEEEEeeC-CCcEEEEeecCCCceEEEEecC-cccCeEEEEe-------eCCCCCCEEEEEeCCC---
Q 022111           13 TVHDVAMDF-YGKRLATASS-DSSIKIIGLSNSASQHLATLKG-HRGPVWQVAW-------AHPKFGSILASCSYDG---   79 (302)
Q Consensus        13 ~v~~~~~s~-~~~~l~s~~~-d~~v~lw~~~~~~~~~~~~~~~-h~~~v~~v~~-------~~~~~~~~l~s~s~D~---   79 (302)
                      ....++|+| +...|..+.. .+.|++.|........+..... .......|+|       .++  ++.|+.+...+   
T Consensus       140 ~p~~la~dp~~~~~Lyv~~~~~~~i~~ID~~~~~v~~l~~~~~~~~~~p~~ia~~~~~~~~d~~--G~~lyvad~~~~~~  217 (496)
T 3kya_A          140 DNGRLAFDPLNKDHLYICYDGHKAIQLIDLKNRMLSSPLNINTIPTNRIRSIAFNKKIEGYADE--AEYMIVAIDYDGKG  217 (496)
T ss_dssp             SEEEEEEETTEEEEEEEEEETEEEEEEEETTTTEEEEEECCTTSSCSBEEEEEECCCBTTTBCT--TCEEEEEECCCTTG
T ss_pred             CCCEEEEccCCCCEEEEEECCCCeEEEEECCCCEEEEEEccCccccCCCcEEEEeecccccCCC--CCEEEEEeCCCCCc
Confidence            355788998 3444554443 3567777765432222211111 1224678998       753  66444444332   


Q ss_pred             ----eEEEEEcCCCCce------eEEEEecCCCCCeeEEEecCCCCCcEEEEEecCCcEEEEEec-------CCCCee--
Q 022111           80 ----QVIIWKEGNQNDW------TQAHTFNDHKSSVNSIAWAPHELGLSLACGSSDGNISVFTAT-------ADGGWD--  140 (302)
Q Consensus        80 ----~i~iwd~~~~~~~------~~~~~~~~h~~~i~~l~~~pd~~~~~l~sg~~d~~v~~~~~~-------~~~~~~--  140 (302)
                          .+.+.+......+      ..+..+.    ....++++|+. +.++++-...+.|..+|..       ....|.  
T Consensus       218 ~~~~~V~~i~r~~~G~~~~~~~~~~v~~~~----~p~giavdp~~-g~LYvtd~~~g~V~r~d~~~~~~~~~tg~~~tp~  292 (496)
T 3kya_A          218 DESPSVYIIKRNADGTFDDRSDIQLIAAYK----QCNGATIHPIN-GELYFNSYEKGQVFRLDLVDYFKTIKNGGSWDPI  292 (496)
T ss_dssp             GGEEEEEEEECCTTSCCSTTSCEEEEEEES----CCCCEEECTTT-CCEEEEETTTTEEEEECHHHHHHHHHTTCCCCCB
T ss_pred             ccCceEEEEecCCCCceeecccceeeccCC----CceEEEEcCCC-CeEEEEECCCCEEEEEecccccccccCceeeccc
Confidence                2445543321122      1222222    23567788863 4556666677789888876       222110  


Q ss_pred             -------eee-ecccCCCCeEEEEeCCCCCCCceeecccCCCce-eEEEeeCCCcEEEEEEec
Q 022111          141 -------TTR-IDQAHPVGVTSVSWAPAMAPGALVGLGLLDPVQ-KLASCGCDNTVKVWKMYN  194 (302)
Q Consensus       141 -------~~~-~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~-~l~s~~~D~~v~iwd~~~  194 (302)
                             ... ........-..++|+|++              . ++++-+....|+.+|...
T Consensus       293 ~~~~~g~~~~l~~~~~~~~p~~ia~~p~G--------------~~lYvaD~~~h~I~kid~dg  341 (496)
T 3kya_A          293 VKNNPNTFKQLFTIADPSWEFQIFIHPTG--------------KYAYFGVINNHYFMRSDYDE  341 (496)
T ss_dssp             GGGCTTTEEEEEECSSSSCCEEEEECTTS--------------SEEEEEETTTTEEEEEEEET
T ss_pred             ccccccccceeEecCCCCCceEEEEcCCC--------------CEEEEEeCCCCEEEEEecCC
Confidence                   001 111112234577887764              4 456666677888877653

>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L

Probab=92.08  E-value=5.6  Score=34.56  Aligned_cols=204  Identities=10%  Similarity=-0.047  Sum_probs=104.6

Q ss_pred             cceeEEEEccCCCEEEEee-CCCcEEEEeecCCC--ceEEEEecCcccCeEEEEeeCCCCCCEEEEEeCCCeEEEEEcCC
Q 022111           12 DTVHDVAMDFYGKRLATAS-SDSSIKIIGLSNSA--SQHLATLKGHRGPVWQVAWAHPKFGSILASCSYDGQVIIWKEGN   88 (302)
Q Consensus        12 ~~v~~~~~s~~~~~l~s~~-~d~~v~lw~~~~~~--~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~s~D~~i~iwd~~~   88 (302)
                      ..+..++|++.+..|.-+. ..+.|+.+++....  ......+.........|++... .++++++-...+.|.+.++..
T Consensus       112 ~~~~~l~~d~~~~~lywsD~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~glavD~~-~~~lY~~d~~~~~I~~~~~~g  190 (400)
T 3p5b_L          112 RNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWI-HSNIYWTDSVLGTVSVADTKG  190 (400)
T ss_dssp             SCEEEEEEETTTTEEEEEETTTTEEEEEEC------CCCEEEECSSCSCEEEEEEETT-TTEEEEEETTTTEEEEECTTT
T ss_pred             CcceEEeeeeccCceEEEecCCCeEEEEEcccCCCCCcceEEEeCCCCCcccEEEEec-CCceEEEECCCCeEEEEeCCC
Confidence            3466788887655555443 45777777765311  0111122222334567787642 356777777788898888765


Q ss_pred             CCceeEEEEecCCCCCeeEEEecCCCCCcEEEEEec-CCcEEEEEecCCCCeeeeeecccCCCCeEEEEeCCCCCCCcee
Q 022111           89 QNDWTQAHTFNDHKSSVNSIAWAPHELGLSLACGSS-DGNISVFTATADGGWDTTRIDQAHPVGVTSVSWAPAMAPGALV  167 (302)
Q Consensus        89 ~~~~~~~~~~~~h~~~i~~l~~~pd~~~~~l~sg~~-d~~v~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~  167 (302)
                      ...   ...+.........|++.|.. +.+..+-.. ...|...++.  +......+. ........++++|..      
T Consensus       191 ~~~---~~l~~~~~~~P~~iavdp~~-g~ly~td~~~~~~I~~~~~d--G~~~~~~~~-~~l~~P~glavd~~~------  257 (400)
T 3p5b_L          191 VKR---KTLFRENGSKPRAIVVDPVH-GFMYWTDWGTPAKIKKGGLN--GVDIYSLVT-ENIQWPNGITLDLLS------  257 (400)
T ss_dssp             CSE---EEEEECSSCCEEEEEEETTT-TEEEEEECSSSCCEEEEETT--SCSCEEEEC-SSCSCEEEEEEETTT------
T ss_pred             Cce---EEEEeCCCCCcceEEEeccc-CeEEEEeCCCCCEEEEEeCC--CCccEEEEE-CCCCceEEEEEEeCC------
Confidence            421   11122233457899998863 433333222 2566666543  211111111 112334667777643      


Q ss_pred             ecccCCCceeEEEeeCCCcEEEEEEecCccccccccccccCCCceeEEEeeCCCCCCccEEEEEecCCeEEEEEec
Q 022111          168 GLGLLDPVQKLASCGCDNTVKVWKMYNGIWKMDCFPALQMHSDWVRSVAWAPNLGLPKSTIASASQDGTVVIWTCA  243 (302)
Q Consensus       168 ~~~~~~~~~~l~s~~~D~~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~l~s~s~D~~i~iwd~~  243 (302)
                             +.++++-+..+.|..+|+.....  ..+....+.-..-..|+...     +..+.+-...+.|..+|..
T Consensus       258 -------~~lY~aD~~~~~I~~~d~dG~~~--~~~~~~~~~l~~P~gl~v~~-----~~lywtd~~~~~V~~~~~~  319 (400)
T 3p5b_L          258 -------GRLYWVDSKLHSISSIDVNGGNR--KTILEDEKRLAHPFSLAVFE-----DKVFWTDIINEAIFSANRL  319 (400)
T ss_dssp             -------TEEEEEETTTTEEEEEETTSCCC--EEEEECSSTTSSEEEEEEET-----TEEEEEESSSCSEEEEESS
T ss_pred             -------CEEEEEECCCCEEEEEeCCCCcc--EEEEeCCCCCCCCEEEEEeC-----CEEEEecCCCCeEEEEEcC
Confidence                   35556656677888888754321  11111111122234565532     2456666667777777743

>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}

Probab=91.50  E-value=5.2  Score=33.08  Aligned_cols=108  Identities=16%  Similarity=0.231  Sum_probs=54.0

Q ss_pred             ceeEEEeeC------CCcEEEEEEecCccccccccccccCCCceeEEEeeCCCCCCccEEEEEecCC-----eEEEEEec
Q 022111          175 VQKLASCGC------DNTVKVWKMYNGIWKMDCFPALQMHSDWVRSVAWAPNLGLPKSTIASASQDG-----TVVIWTCA  243 (302)
Q Consensus       175 ~~~l~s~~~------D~~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~l~s~s~D~-----~i~iwd~~  243 (302)
                      ++.++.||.      -+.+.+||+.+..|...  ..+......-.++.+  +    +..++.|+.++     .+.+||+.
T Consensus       149 ~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~--~~~p~~r~~~~~~~~--~----~~iyv~GG~~~~~~~~~~~~yd~~  220 (315)
T 4asc_A          149 DLVYVIGGKGSDRKCLNKMCVYDPKKFEWKEL--APMQTARSLFGATVH--D----GRIIVAAGVTDTGLTSSAEVYSIT  220 (315)
T ss_dssp             TEEEEECCBCTTSCBCCCEEEEETTTTEEEEC--CCCSSCCBSCEEEEE--T----TEEEEEEEECSSSEEEEEEEEETT
T ss_pred             CEEEEEeCCCCCCcccceEEEEeCCCCeEEEC--CCCCCchhceEEEEE--C----CEEEEEeccCCCCccceEEEEECC
Confidence            456667765      24688899887766531  111100111112222  2    35666776554     47777776


Q ss_pred             cCCcceeeeee-ccCCCcEEEEEEccCCCEEEEecCC---------------ceEEeeecCCceEEEe
Q 022111          244 KEGEQWEGRVL-KDFKTPVWSVSWSLTGNLLAVADAN---------------NVTLWKEAVDGEWQQV  295 (302)
Q Consensus       244 ~~~~~~~~~~~-~~~~~~v~~~~~spdg~~la~~~~d---------------~i~~w~~~~~~~~~~~  295 (302)
                      +.  .|..... .........+.+  ++++++.|+.+               .+.+||.. ..+|.+.
T Consensus       221 ~~--~W~~~~~~p~~r~~~~~~~~--~~~l~v~GG~~~~~~~~~~~~~~~~~~v~~yd~~-~~~W~~~  283 (315)
T 4asc_A          221 DN--KWAPFEAFPQERSSLSLVSL--VGTLYAIGGFATLETESGELVPTELNDIWRYNEE-EKKWEGV  283 (315)
T ss_dssp             TT--EEEEECCCSSCCBSCEEEEE--TTEEEEEEEEEEEECTTSCEEEEEEEEEEEEETT-TTEEEEE
T ss_pred             CC--eEEECCCCCCcccceeEEEE--CCEEEEECCccccCcCCccccccccCcEEEecCC-CChhhhh
Confidence            53  4532210 000111122222  66777777642               25667754 5689987

>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}

Probab=90.97  E-value=5.9  Score=32.74  Aligned_cols=104  Identities=8%  Similarity=0.072  Sum_probs=51.8

Q ss_pred             CCCEEEEeeCC--------CcEEEEeecCCCceEEEEecCcccCeEEEEeeCCCCCCEEEEEeC-C-----CeEEEEEcC
Q 022111           22 YGKRLATASSD--------SSIKIIGLSNSASQHLATLKGHRGPVWQVAWAHPKFGSILASCSY-D-----GQVIIWKEG   87 (302)
Q Consensus        22 ~~~~l~s~~~d--------~~v~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~s~-D-----~~i~iwd~~   87 (302)
                      +++.++.||.+        ..+.+||......+.+..+......- +++..   ++++++.|+. +     ..+.+||+.
T Consensus        98 ~~~lyv~GG~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~-~~~~~---~~~iyv~GG~~~~~~~~~~~~~yd~~  173 (315)
T 4asc_A           98 LNSIYVVGGREIKDGERCLDSVMCYDRLSFKWGESDPLPYVVYGH-TVLSH---MDLVYVIGGKGSDRKCLNKMCVYDPK  173 (315)
T ss_dssp             TTEEEEECCEESSTTCCBCCCEEEEETTTTEEEECCCCSSCCBSC-EEEEE---TTEEEEECCBCTTSCBCCCEEEEETT
T ss_pred             CCEEEEEeCCcCCCCCcccceEEEECCCCCcEeECCCCCCcccce-eEEEE---CCEEEEEeCCCCCCcccceEEEEeCC
Confidence            46677777743        34777887654443333332111111 12222   2567777776 2     457888886


Q ss_pred             CCCceeEEEEecCCCCCeeEEEecCCCCCcEEEEEecCC-----cEEEEEec
Q 022111           88 NQNDWTQAHTFNDHKSSVNSIAWAPHELGLSLACGSSDG-----NISVFTAT  134 (302)
Q Consensus        88 ~~~~~~~~~~~~~h~~~i~~l~~~pd~~~~~l~sg~~d~-----~v~~~~~~  134 (302)
                      +. .|..+.........-.++.+  +  +.+++.|+.++     .+.+||..
T Consensus       174 ~~-~W~~~~~~p~~r~~~~~~~~--~--~~iyv~GG~~~~~~~~~~~~yd~~  220 (315)
T 4asc_A          174 KF-EWKELAPMQTARSLFGATVH--D--GRIIVAAGVTDTGLTSSAEVYSIT  220 (315)
T ss_dssp             TT-EEEECCCCSSCCBSCEEEEE--T--TEEEEEEEECSSSEEEEEEEEETT
T ss_pred             CC-eEEECCCCCCchhceEEEEE--C--CEEEEEeccCCCCccceEEEEECC
Confidence            53 45544332211111122223  2  45677776654     46667765

>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B

Probab=90.76  E-value=6.6  Score=32.89  Aligned_cols=198  Identities=9%  Similarity=-0.061  Sum_probs=103.2

Q ss_pred             eeEEEEccCCCEEE-EeeCCCcEEEEeecCCCceEEEEecCcccCeEEEEeeCCCCCCEEEEEeCCCeEEEEEcCCCCce
Q 022111           14 VHDVAMDFYGKRLA-TASSDSSIKIIGLSNSASQHLATLKGHRGPVWQVAWAHPKFGSILASCSYDGQVIIWKEGNQNDW   92 (302)
Q Consensus        14 v~~~~~s~~~~~l~-s~~~d~~v~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~s~D~~i~iwd~~~~~~~   92 (302)
                      ...+.|++.+..|. +-...+.|+.++........ ..+.........+++... .++++++-...+.|.+.++..... 
T Consensus        37 ~~~ld~d~~~~~lyw~D~~~~~I~r~~~~g~~~~~-~~~~~~l~~p~glavd~~-~g~ly~~d~~~~~I~~~~~dG~~~-  113 (318)
T 3sov_A           37 AAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQ-NVVVSGLLSPDGLACDWL-GEKLYWTDSETNRIEVSNLDGSLR-  113 (318)
T ss_dssp             EEEEEEEGGGTEEEEEETTTTEEEEEETTSSSCCC-EEEEECCSCCCEEEEETT-TTEEEEEETTTTEEEEEETTSCSC-
T ss_pred             cEEEEEEeCCCEEEEEECCCCcEEEEEccCCCceE-EEEcCCCCCccEEEEEcC-CCeEEEEECCCCEEEEEECCCCcE-
Confidence            44567776544444 43455677777765432111 111111123456777542 366777777788999998765322 


Q ss_pred             eEEEEecCCCCCeeEEEecCCCCCcEEEEEec--CCcEEEEEecCCCCeeeeeecccCCCCeEEEEeCCCCCCCceeecc
Q 022111           93 TQAHTFNDHKSSVNSIAWAPHELGLSLACGSS--DGNISVFTATADGGWDTTRIDQAHPVGVTSVSWAPAMAPGALVGLG  170 (302)
Q Consensus        93 ~~~~~~~~h~~~i~~l~~~pd~~~~~l~sg~~--d~~v~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~  170 (302)
                      ..  .+.........+++.|.. +. |.....  .+.|..++..  +........ ..-..-..++++|+.         
T Consensus       114 ~~--l~~~~~~~P~giavdp~~-g~-ly~td~~~~~~I~r~~~d--G~~~~~~~~-~~l~~Pnglavd~~~---------  177 (318)
T 3sov_A          114 KV--LFWQELDQPRAIALDPSS-GF-MYWTDWGEVPKIERAGMD--GSSRFIIIN-SEIYWPNGLTLDYEE---------  177 (318)
T ss_dssp             EE--EECSSCSSEEEEEEEGGG-TE-EEEEECSSSCEEEEEETT--SCSCEEEEC-SSCSCEEEEEEETTT---------
T ss_pred             EE--EEeCCCCCccEEEEeCCC-CE-EEEEecCCCCEEEEEEcC--CCCeEEEEE-CCCCCccEEEEeccC---------
Confidence            11  122334567899998863 33 444443  3555555543  221111111 112234677777643         


Q ss_pred             cCCCceeEEEeeCCCcEEEEEEecCccccccccccccCCCceeEEEeeCCCCCCccEEEEEecCCeEEEEEec
Q 022111          171 LLDPVQKLASCGCDNTVKVWKMYNGIWKMDCFPALQMHSDWVRSVAWAPNLGLPKSTIASASQDGTVVIWTCA  243 (302)
Q Consensus       171 ~~~~~~~l~s~~~D~~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~l~s~s~D~~i~iwd~~  243 (302)
                          +.++++-+..+.|..+|+...... ...   .+.-..-..+++..+     ..+.+-...+.|..++..
T Consensus       178 ----~~lY~aD~~~~~I~~~d~dG~~~~-~~~---~~~~~~P~glav~~~-----~lywtd~~~~~V~~~~~~  237 (318)
T 3sov_A          178 ----QKLYWADAKLNFIHKSNLDGTNRQ-AVV---KGSLPHPFALTLFED-----ILYWTDWSTHSILACNKY  237 (318)
T ss_dssp             ----TEEEEEETTTTEEEEEETTSCSCE-EEE---CSCCSCEEEEEEETT-----EEEEEETTTTEEEEEETT
T ss_pred             ----CEEEEEECCCCEEEEEcCCCCceE-EEe---cCCCCCceEEEEeCC-----EEEEEecCCCeEEEEECC
Confidence                356666667788888887643211 111   112233456666432     455665667778777764

>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A

Probab=90.24  E-value=6.9  Score=32.25  Aligned_cols=151  Identities=16%  Similarity=0.179  Sum_probs=72.1

Q ss_pred             CCCEEEEeeC----C-----CcEEEEeecCCCceEEEEecCcccCeEEEEeeCCCCCCEEEEEeCC-----CeEEEEEcC
Q 022111           22 YGKRLATASS----D-----SSIKIIGLSNSASQHLATLKGHRGPVWQVAWAHPKFGSILASCSYD-----GQVIIWKEG   87 (302)
Q Consensus        22 ~~~~l~s~~~----d-----~~v~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~s~D-----~~i~iwd~~   87 (302)
                      +++.++.||.    +     ..+.+||........+..+......-..+.+    ++++++.|+.+     ..+.+||+.
T Consensus        70 ~~~lyv~GG~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~----~~~iyv~GG~~~~~~~~~~~~yd~~  145 (308)
T 1zgk_A           70 GGLLYAVGGRNNSPDGNTDSSALDCYNPMTNQWSPCAPMSVPRNRIGVGVI----DGHIYAVGGSHGCIHHNSVERYEPE  145 (308)
T ss_dssp             TTEEEEECCEEEETTEEEECCCEEEEETTTTEEEECCCCSSCCBTCEEEEE----TTEEEEECCEETTEECCCEEEEETT
T ss_pred             CCEEEEECCCcCCCCCCeecceEEEECCCCCeEeECCCCCcCccccEEEEE----CCEEEEEcCCCCCcccccEEEECCC
Confidence            5667777775    2     3577777765444333333211111112222    25677777643     357778876


Q ss_pred             CCCceeEEEEecCCCCCeeEEEecCCCCCcEEEEEecC-----CcEEEEEecCCCCeeeeeecccCCCCeEEEEeCCCCC
Q 022111           88 NQNDWTQAHTFNDHKSSVNSIAWAPHELGLSLACGSSD-----GNISVFTATADGGWDTTRIDQAHPVGVTSVSWAPAMA  162 (302)
Q Consensus        88 ~~~~~~~~~~~~~h~~~i~~l~~~pd~~~~~l~sg~~d-----~~v~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~  162 (302)
                      +. .|..+..+......-.++.+  +  +.+++.|+.+     +.+..||..+ ..|...............+.+     
T Consensus       146 ~~-~W~~~~~~p~~r~~~~~~~~--~--~~iyv~GG~~~~~~~~~~~~yd~~~-~~W~~~~~~p~~r~~~~~~~~-----  214 (308)
T 1zgk_A          146 RD-EWHLVAPMLTRRIGVGVAVL--N--RLLYAVGGFDGTNRLNSAECYYPER-NEWRMITAMNTIRSGAGVCVL-----  214 (308)
T ss_dssp             TT-EEEECCCCSSCCBSCEEEEE--T--TEEEEECCBCSSCBCCCEEEEETTT-TEEEECCCCSSCCBSCEEEEE-----
T ss_pred             CC-eEeECCCCCccccceEEEEE--C--CEEEEEeCCCCCCcCceEEEEeCCC-CeEeeCCCCCCccccceEEEE-----
Confidence            53 45444322211111122223  2  4566666654     3566777643 234321100000000111111     


Q ss_pred             CCceeecccCCCceeEEEeeCC-----CcEEEEEEecCccc
Q 022111          163 PGALVGLGLLDPVQKLASCGCD-----NTVKVWKMYNGIWK  198 (302)
Q Consensus       163 ~~~~~~~~~~~~~~~l~s~~~D-----~~v~iwd~~~~~~~  198 (302)
                                 +++.++.||.+     ..+.+||+.+..|.
T Consensus       215 -----------~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~  244 (308)
T 1zgk_A          215 -----------HNCIYAAGGYDGQDQLNSVERYDVETETWT  244 (308)
T ss_dssp             -----------TTEEEEECCBCSSSBCCCEEEEETTTTEEE
T ss_pred             -----------CCEEEEEeCCCCCCccceEEEEeCCCCcEE
Confidence                       24667777664     46889998877665

>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A

Probab=90.08  E-value=9.7  Score=33.75  Aligned_cols=56  Identities=14%  Similarity=0.315  Sum_probs=29.4

Q ss_pred             CCCeeEEEecCCCCCcEEEEEecCCcEEEEEecCCCCeee-eeeccc-----CCCCeEEEEeCCC
Q 022111          102 KSSVNSIAWAPHELGLSLACGSSDGNISVFTATADGGWDT-TRIDQA-----HPVGVTSVSWAPA  160 (302)
Q Consensus       102 ~~~i~~l~~~pd~~~~~l~sg~~d~~v~~~~~~~~~~~~~-~~~~~~-----h~~~v~~~~~~~~  160 (302)
                      -.....++|.|+  |.++++-...+.|.+++... +.... ..+...     .......++|+|+
T Consensus        26 l~~P~~~a~~pd--G~l~V~e~~gg~I~~~~~~~-g~~~~~~~~~~~~~~~~g~~Gllgia~~Pd   87 (454)
T 1cru_A           26 LNKPHALLWGPD--NQIWLTERATGKILRVNPES-GSVKTVFQVPEIVNDADGQNGLLGFAFHPD   87 (454)
T ss_dssp             CSSEEEEEECTT--SCEEEEETTTCEEEEECTTT-CCEEEEEECTTCCCCTTSSCSEEEEEECTT
T ss_pred             CCCceEEEEcCC--CcEEEEEcCCCEEEEEECCC-CcEeEEecCCccccccCCCCceeEEEECCC
Confidence            345679999998  65555543334676665322 22221 111110     1234567888875

>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*

Probab=89.53  E-value=5.5  Score=33.94  Aligned_cols=110  Identities=10%  Similarity=-0.004  Sum_probs=54.6

Q ss_pred             eEEEEeCCCCCCCceeecccCCCceeEEEeeCCCcEEEEEEecCccccccccccccCCCceeEEEeeCCCCCCccEEEEE
Q 022111          152 VTSVSWAPAMAPGALVGLGLLDPVQKLASCGCDNTVKVWKMYNGIWKMDCFPALQMHSDWVRSVAWAPNLGLPKSTIASA  231 (302)
Q Consensus       152 v~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~D~~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~l~s~  231 (302)
                      -..++|.|+              +.+++ +..++.|+++|. ++...+..+..+.........|+++|+...++...++-
T Consensus        31 P~~ia~~pd--------------G~l~V-~e~~g~I~~~d~-~G~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lyv~~   94 (354)
T 3a9g_A           31 PWSIAPLGG--------------GRYLV-TERPGRLVLISP-SGKKLVASFDVANVGEAGLLGLALHPEFPKKSWVYLYA   94 (354)
T ss_dssp             EEEEEEEET--------------TEEEE-EETTTEEEEECS-SCEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEE
T ss_pred             CeEEEEcCC--------------CeEEE-EeCCCEEEEEeC-CCceEeeccceeecCCCceeeEEeCCCCCcCCEEEEEE
Confidence            456777765              34444 455688888863 33211111111112234578999999721113555555


Q ss_pred             ec---C----CeEEEEEeccCCcce--eeeeec----cCCCcEEEEEEccCCCEEEEec
Q 022111          232 SQ---D----GTVVIWTCAKEGEQW--EGRVLK----DFKTPVWSVSWSLTGNLLAVAD  277 (302)
Q Consensus       232 s~---D----~~i~iwd~~~~~~~~--~~~~~~----~~~~~v~~~~~spdg~~la~~~  277 (302)
                      +.   +    ..|..|+........  ...++.    ........++|.|||.++++.+
T Consensus        95 ~~~~~~~~~~~~v~r~~~~~~~~~~~~~~~l~~~~~~~~~h~~~~l~~~pDG~Lyvt~G  153 (354)
T 3a9g_A           95 SYFAEGGHIRNRVIRGRLDGSTFKLKEVKTLIDGIPGAYIHNGGRIRFGPDGMLYITTG  153 (354)
T ss_dssp             EEECGGGCEEEEEEEEEECSSSCCEEEEEEEEEEEECCSSCCCCCEEECTTSCEEEECC
T ss_pred             eccCCCCCcceEEEEEEECCCCcCcCccEEEEEcCCCCCCcCCceEEECCCCcEEEEEC
Confidence            43   3    456666654321000  001111    1111245799999998776643

>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}

Probab=89.32  E-value=8.9  Score=32.55  Aligned_cols=109  Identities=12%  Similarity=0.107  Sum_probs=55.1

Q ss_pred             eEEEEeCCCCCCCceeecccCCCceeEEEeeCCCcEEEEEEecCccc-cccccccccCCCceeEEEeeCCCCCCccEEEE
Q 022111          152 VTSVSWAPAMAPGALVGLGLLDPVQKLASCGCDNTVKVWKMYNGIWK-MDCFPALQMHSDWVRSVAWAPNLGLPKSTIAS  230 (302)
Q Consensus       152 v~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~D~~v~iwd~~~~~~~-~~~~~~~~~h~~~v~~v~~~p~~~~~~~~l~s  230 (302)
                      -..++|.|++              ..++ +..++.|++++  ++... +..+..+.........|+|+|+....+...++
T Consensus        33 P~~ia~~pdG--------------~l~V-~e~~g~I~~i~--~g~~~~~~~~~v~~~g~~~p~gia~~pdf~~~g~lYv~   95 (352)
T 2ism_A           33 PWALAFLPDG--------------GMLI-AERPGRIRLFR--EGRLSTYAELSVYHRGESGLLGLALHPRFPQEPYVYAY   95 (352)
T ss_dssp             EEEEEECTTS--------------CEEE-EETTTEEEEEE--TTEEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEE
T ss_pred             ceEEEEcCCC--------------eEEE-EeCCCeEEEEE--CCCccEeecceEeecCCCCceeEEECCCCCCCCEEEEE
Confidence            4567777753              4444 44568888887  33211 00011111223457899999982111345555


Q ss_pred             EecC-----CeEEEEEeccCCcceeeeeeccC------CCcEEEEEEccCCCEEEEec
Q 022111          231 ASQD-----GTVVIWTCAKEGEQWEGRVLKDF------KTPVWSVSWSLTGNLLAVAD  277 (302)
Q Consensus       231 ~s~D-----~~i~iwd~~~~~~~~~~~~~~~~------~~~v~~~~~spdg~~la~~~  277 (302)
                      -+..     ..|..++...........++...      ......++|.|||.++++.+
T Consensus        96 ~~~~~~~~~~~v~r~~~~~~~~~~~~~l~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~G  153 (352)
T 2ism_A           96 RTVAEGGLRNQVVRLRHLGERGVLDRVVLDGIPARPHGLHSGGRIAFGPDGMLYVTTG  153 (352)
T ss_dssp             EEECTTSSEEEEEEEEECSSCEEEEEEEEEEECCCTTCCCCCCCEEECTTSCEEEECC
T ss_pred             EecCCCCCccEEEEEEeCCCCcCceEEEEEeCCCCCCCCcCCceEEECCCCCEEEEEC
Confidence            5543     56666766532100001111111      11246899999997766643

>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*

Probab=89.02  E-value=14  Score=34.08  Aligned_cols=21  Identities=14%  Similarity=0.099  Sum_probs=16.9

Q ss_pred             eeEEEeeCCCcEEEEEEecCc
Q 022111          176 QKLASCGCDNTVKVWKMYNGI  196 (302)
Q Consensus       176 ~~l~s~~~D~~v~iwd~~~~~  196 (302)
                      ..++.++.++.++++|..++.
T Consensus       324 ~~v~~~~~~G~l~~lD~~tG~  344 (599)
T 1w6s_A          324 KLLTHPDRNGIVYTLDRTDGA  344 (599)
T ss_dssp             EEEEEECTTSEEEEEETTTCC
T ss_pred             EEEEEECCCcEEEEEECCCCC
Confidence            457778899999999987763

>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}

Probab=88.77  E-value=9.1  Score=31.63  Aligned_cols=104  Identities=15%  Similarity=0.154  Sum_probs=50.0

Q ss_pred             CCCEEEEeeCC-------CcEEEEeecCCCceEEEEecCcccCeEEEEeeCCCCCCEEEEEeC------CCeEEEEEcCC
Q 022111           22 YGKRLATASSD-------SSIKIIGLSNSASQHLATLKGHRGPVWQVAWAHPKFGSILASCSY------DGQVIIWKEGN   88 (302)
Q Consensus        22 ~~~~l~s~~~d-------~~v~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~s~------D~~i~iwd~~~   88 (302)
                      +++.++.||.+       ..+.+||........+..+......- +++..   ++++++.|+.      -..+.+||+.+
T Consensus       109 ~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~-~~~~~---~~~iyv~GG~~~~~~~~~~~~~yd~~~  184 (318)
T 2woz_A          109 DDKIYVVAGKDLQTEASLDSVLCYDPVAAKWSEVKNLPIKVYGH-NVISH---NGMIYCLGGKTDDKKCTNRVFIYNPKK  184 (318)
T ss_dssp             TTEEEEEEEEBTTTCCEEEEEEEEETTTTEEEEECCCSSCEESC-EEEEE---TTEEEEECCEESSSCBCCCEEEEETTT
T ss_pred             CCEEEEEcCccCCCCcccceEEEEeCCCCCEeECCCCCCccccc-EEEEE---CCEEEEEcCCCCCCCccceEEEEcCCC
Confidence            46677777754       23666776554443332222111111 12222   2567777764      23588888865


Q ss_pred             CCceeEEEEecCCCCCeeEEEecCCCCCcEEEEEecCC-----cEEEEEec
Q 022111           89 QNDWTQAHTFNDHKSSVNSIAWAPHELGLSLACGSSDG-----NISVFTAT  134 (302)
Q Consensus        89 ~~~~~~~~~~~~h~~~i~~l~~~pd~~~~~l~sg~~d~-----~v~~~~~~  134 (302)
                      . .|..+.........-.++.+  +  +.+++.|+.++     .+.+||..
T Consensus       185 ~-~W~~~~~~p~~r~~~~~~~~--~--~~iyv~GG~~~~~~~~~~~~yd~~  230 (318)
T 2woz_A          185 G-DWKDLAPMKTPRSMFGVAIH--K--GKIVIAGGVTEDGLSASVEAFDLK  230 (318)
T ss_dssp             T-EEEEECCCSSCCBSCEEEEE--T--TEEEEEEEEETTEEEEEEEEEETT
T ss_pred             C-EEEECCCCCCCcccceEEEE--C--CEEEEEcCcCCCCccceEEEEECC
Confidence            3 46554332211111122333  2  45666666543     45567765

>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1

Probab=88.72  E-value=14  Score=33.83  Aligned_cols=54  Identities=17%  Similarity=0.305  Sum_probs=30.4

Q ss_pred             CCeEEEEEeccCCcceeeeeeccCCCcEEEEEEccCCCEEEEecCC-ceEEeeecCCce
Q 022111          234 DGTVVIWTCAKEGEQWEGRVLKDFKTPVWSVSWSLTGNLLAVADAN-NVTLWKEAVDGE  291 (302)
Q Consensus       234 D~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~la~~~~d-~i~~w~~~~~~~  291 (302)
                      ++.|..||+.+.+..|+....    .++++-.....|.++.+++.| .++.||....+.
T Consensus       465 ~G~l~A~D~~tG~~~W~~~~~----~~~~~g~~~tagglvf~g~~dg~l~A~D~~tG~~  519 (582)
T 1flg_A          465 VGSLRAMDPVSGKVVWEHKEH----LPLWAGVLATAGNLVFTGTGDGYFKAFDAKSGKE  519 (582)
T ss_dssp             SEEEEEECTTTCCEEEEEEES----SCCCSCCEEETTTEEEEECTTSEEEEEETTTCCE
T ss_pred             cceEEEEECCCCCEEEEecCC----CCCcccceEeCCCEEEEECCCCcEEEEECCCCCE
Confidence            678888888776555543321    122221222235566667666 688888754444

>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}

Probab=87.86  E-value=11  Score=31.60  Aligned_cols=96  Identities=11%  Similarity=0.113  Sum_probs=46.1

Q ss_pred             CCCEEEEeeCC-CcEEEEeecC--CCceEEEEecCcccCeEEEEeeCCCCCCEEEEEeC-C---------CeEEEEEcCC
Q 022111           22 YGKRLATASSD-SSIKIIGLSN--SASQHLATLKGHRGPVWQVAWAHPKFGSILASCSY-D---------GQVIIWKEGN   88 (302)
Q Consensus        22 ~~~~l~s~~~d-~~v~lw~~~~--~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~s~-D---------~~i~iwd~~~   88 (302)
                      +++.++.||.+ ..+.+||...  .....+..+......-.+++..   ++++++.|+. +         ..+.+||+.+
T Consensus        19 ~~~iyv~GG~~~~~~~~~d~~~~~~~W~~~~~~p~~~R~~~~~~~~---~~~lyv~GG~~~~~~~~~~~~~~v~~yd~~~   95 (357)
T 2uvk_A           19 NDTVYIGLGSAGTAWYKLDTQAKDKKWTALAAFPGGPRDQATSAFI---DGNLYVFGGIGKNSEGLTQVFNDVHKYNPKT   95 (357)
T ss_dssp             TTEEEEECGGGTTCEEEEETTSSSCCEEECCCCTTCCCBSCEEEEE---TTEEEEECCEEECTTSCEEECCCEEEEETTT
T ss_pred             CCEEEEEeCcCCCeEEEEccccCCCCeeECCCCCCCcCccceEEEE---CCEEEEEcCCCCCCCccceeeccEEEEeCCC
Confidence            57777777754 4577777752  3333333332101011122222   2567777765 2         3577888765


Q ss_pred             CCceeEEEEec-CCCCCeeEEEecCCCCCcEEEEEecC
Q 022111           89 QNDWTQAHTFN-DHKSSVNSIAWAPHELGLSLACGSSD  125 (302)
Q Consensus        89 ~~~~~~~~~~~-~h~~~i~~l~~~pd~~~~~l~sg~~d  125 (302)
                       +.|..+.... .....-.++.+  +  +.+++.|+.+
T Consensus        96 -~~W~~~~~~~p~~r~~~~~~~~--~--~~iyv~GG~~  128 (357)
T 2uvk_A           96 -NSWVKLMSHAPMGMAGHVTFVH--N--GKAYVTGGVN  128 (357)
T ss_dssp             -TEEEECSCCCSSCCSSEEEEEE--T--TEEEEEECCC
T ss_pred             -CcEEECCCCCCcccccceEEEE--C--CEEEEEeCcC
Confidence             3455443322 11111122222  2  4567777754

>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}

Probab=87.34  E-value=13  Score=31.70  Aligned_cols=108  Identities=12%  Similarity=0.097  Sum_probs=58.2

Q ss_pred             ceeEEEEccCCCEEEEeeCCCcEEEEeecCCCceEEEEe----cCcccCeEEEEeeCC--CCCCEEEEEe--CCCeEEEE
Q 022111           13 TVHDVAMDFYGKRLATASSDSSIKIIGLSNSASQHLATL----KGHRGPVWQVAWAHP--KFGSILASCS--YDGQVIIW   84 (302)
Q Consensus        13 ~v~~~~~s~~~~~l~s~~~d~~v~lw~~~~~~~~~~~~~----~~h~~~v~~v~~~~~--~~~~~l~s~s--~D~~i~iw   84 (302)
                      ..+.++|.|||+++++--..|.|++++........+..+    ....+....|+|.|+  .++.+.++-+  .+..|.-|
T Consensus        33 ~P~~ia~~pdG~llVter~~G~I~~v~~~~g~~~~v~~~~~v~~~g~~GllGia~~Pdf~~~g~lYv~yt~~~~~~v~R~  112 (347)
T 3das_A           33 SPWGLAPLPGGDLLVSSRDEATITRVDAKTGRKTELGEVPGVSPSGEGGLLGIALSPDYASDHMVYAYFTSASDNRIVRM  112 (347)
T ss_dssp             SEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCBTTBSEEEEEECTTHHHHCEEEEEEECSSSEEEEEE
T ss_pred             CceEEEEcCCCcEEEEEecCCEEEEEECCCCcEeeecccCceeecCCCCceeeEeccccccCCEEEEEEecCCCCEEEEE
Confidence            456799999998777654489898886543332233322    123456788999753  1244444432  34445445


Q ss_pred             EcCCCC----c---ee-EEEEec-CCCCCeeEEEecCCCCCcEEEEE
Q 022111           85 KEGNQN----D---WT-QAHTFN-DHKSSVNSIAWAPHELGLSLACG  122 (302)
Q Consensus        85 d~~~~~----~---~~-~~~~~~-~h~~~i~~l~~~pd~~~~~l~sg  122 (302)
                      .+....    .   .+ .+..+. ...+....|.|.||  |.+.++.
T Consensus       113 ~~~~~~~~~~~~~~~~~i~~~~p~~~~H~g~~l~fgpD--G~Lyvt~  157 (347)
T 3das_A          113 LYDEKKPSGEQLGAPDTVFRGIPKGVIHNGGRIAFGPD--KMLYAGT  157 (347)
T ss_dssp             EBCTTSCTTCCBCCCEEEEEEECCCSSCCCCCEEECTT--SCEEEEC
T ss_pred             EeCCCCcccccCCCcEEEEEcCCCCCCccCccccCCCC--CCEEEEE
Confidence            544311    1   11 111222 12234578999998  5444443

>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A

Probab=86.38  E-value=15  Score=31.43  Aligned_cols=195  Identities=12%  Similarity=0.107  Sum_probs=102.2

Q ss_pred             CCEEEEeeCCCcEEEEeecCCCceEEEEecCcccCeEEEEeeCCC--CCC---E-EEEEeC--CCeEEEEEcCCCCceeE
Q 022111           23 GKRLATASSDSSIKIIGLSNSASQHLATLKGHRGPVWQVAWAHPK--FGS---I-LASCSY--DGQVIIWKEGNQNDWTQ   94 (302)
Q Consensus        23 ~~~l~s~~~d~~v~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~~--~~~---~-l~s~s~--D~~i~iwd~~~~~~~~~   94 (302)
                      ..+++.....+-+.+||+..   +.+..+..  +.+..+...+..  .|+   + ++|.-.  +.+|++|++.....  .
T Consensus        40 ~s~ii~t~k~~gL~Vydl~G---~~l~~~~~--g~~nnVD~r~~~~l~g~~~dla~as~R~~~~n~l~vf~iDp~~~--~  112 (355)
T 3amr_A           40 NSKLITTNKKSGLVVYSLDG---KMLHSYNT--GKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNG--T  112 (355)
T ss_dssp             GCEEEEEETTTEEEEEETTS---CEEEEECC--SCEEEEEEEEEEEETTEEEEEEEEEECSTTCCEEEEEEECTTTC--C
T ss_pred             ccEEEEEcCCCCEEEEcCCC---cEEEEccC--CCcccEEEecccccCCceEeEEEEeCCCCCCCeEEEEEECCCCC--c
Confidence            35566666778899999953   44555543  345555443210  122   2 344444  68999997732111  2


Q ss_pred             EEEecC-------CCCCeeEEEe--cCCCCCcEEEEEecCCcEEEEEecCCC--Cee---eeeecccCCCCeEEEEeCCC
Q 022111           95 AHTFND-------HKSSVNSIAW--APHELGLSLACGSSDGNISVFTATADG--GWD---TTRIDQAHPVGVTSVSWAPA  160 (302)
Q Consensus        95 ~~~~~~-------h~~~i~~l~~--~pd~~~~~l~sg~~d~~v~~~~~~~~~--~~~---~~~~~~~h~~~v~~~~~~~~  160 (302)
                      +..+..       -...+..+++  +|.....++.....++.+..|++...+  ...   ...+.  -..++..+...+.
T Consensus       113 l~~i~~~~~pv~t~~~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~g~~~~~lVR~f~--lgsq~EgcvvDd~  190 (355)
T 3amr_A          113 LQSMTDPDHPIATAINEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKNGYISGKKVRAFK--MNSQTEGMAADDE  190 (355)
T ss_dssp             EEECSCTTSCEECCCSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSCEEEEEEEEEE--CSSCEEEEEEETT
T ss_pred             eeeccccccCcCCCCCCeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCCCcccceEEEEec--CCCCcceEEEcCC
Confidence            333321       1145566776  665323467777888999999885321  111   12221  1234444544432


Q ss_pred             CCCCceeecccCCCceeEEEeeCCCcEEEEEEecCc-ccccccccc-ccC-CCceeEEEee--CCCCCCccEEEEEe-cC
Q 022111          161 MAPGALVGLGLLDPVQKLASCGCDNTVKVWKMYNGI-WKMDCFPAL-QMH-SDWVRSVAWA--PNLGLPKSTIASAS-QD  234 (302)
Q Consensus       161 ~~~~~~~~~~~~~~~~~l~s~~~D~~v~iwd~~~~~-~~~~~~~~~-~~h-~~~v~~v~~~--p~~~~~~~~l~s~s-~D  234 (302)
                                    ...|..+-+|.-|-.+|..... .....+..+ .++ ...+..|++-  +++   ..+|++++ .+
T Consensus       191 --------------~g~Lyv~eEd~GIw~~da~p~~~~~~~~v~~~~~g~l~aDvEGLai~~~~~g---~gyLivSsQG~  253 (355)
T 3amr_A          191 --------------YGRLYIAEEDEAIWKFSAEPDGGSNGTVIDRADGRHLTRDIEGLTIYYAADG---KGYLMASSQGN  253 (355)
T ss_dssp             --------------TTEEEEEETTTEEEEEECSTTSCSCCEEEEEBSSSSBCSCEEEEEEEECGGG---CEEEEEEEGGG
T ss_pred             --------------CCeEEEecccceEEEEeCCcCCCCCceEEEEecCCccccCcceEEEEecCCC---CEEEEEEcCCC
Confidence                          3677888887554444433211 011122222 122 2357788874  443   12455555 57


Q ss_pred             CeEEEEEec
Q 022111          235 GTVVIWTCA  243 (302)
Q Consensus       235 ~~i~iwd~~  243 (302)
                      .++.+||.+
T Consensus       254 ~s~~Vydr~  262 (355)
T 3amr_A          254 SSYAIYDRQ  262 (355)
T ss_dssp             TEEEEEESS
T ss_pred             CEEEEEECC
Confidence            799999986

>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*

Probab=84.57  E-value=6.4  Score=31.38  Aligned_cols=104  Identities=10%  Similarity=0.089  Sum_probs=54.1

Q ss_pred             ceeEEEEccCCCEEEEeeCCCcEEEEeecCCC-------ceEEEEecCcccCeEEEEeeCCCCCCEEEEEeCCCeEEEEE
Q 022111           13 TVHDVAMDFYGKRLATASSDSSIKIIGLSNSA-------SQHLATLKGHRGPVWQVAWAHPKFGSILASCSYDGQVIIWK   85 (302)
Q Consensus        13 ~v~~~~~s~~~~~l~s~~~d~~v~lw~~~~~~-------~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~s~D~~i~iwd   85 (302)
                      .++.++|+|+|.+.+.  .+++++-.+..+..       ...+... +-.. ..++.|.+  +|.+.++  .|+.|.-++
T Consensus        42 ~~~~laf~P~G~LYaV--~~G~Ly~~~~~t~~~~~W~~s~t~IG~~-Gw~~-F~a~~fD~--~G~LYav--~dG~iyr~~  113 (236)
T 1tl2_A           42 NFKFLFLSPGGELYGV--LNDKIYKGTPPTHDNDNWMGRAKKIGNG-GWNQ-FQFLFFDP--NGYLYAV--SKDKLYKAS  113 (236)
T ss_dssp             TCSEEEECTTSCEEEE--ETTEEEEESCCCSTTCCHHHHCEEEECS-CGGG-CSEEEECT--TSCEEEE--ETTEEEEES
T ss_pred             cceeEEECCCccEEEE--eCCeEEEECCCCCCcccccccccEeccc-cccc-ceEEEECC--CCCEEEe--CCCEEEEeC
Confidence            5678999999986665  56654443332110       1112111 2222 35677754  3777666  568876666


Q ss_pred             cCC--CCceeEE-EEe-cCCCCCeeEEEecCCCCCcEEEEEecCCcE
Q 022111           86 EGN--QNDWTQA-HTF-NDHKSSVNSIAWAPHELGLSLACGSSDGNI  128 (302)
Q Consensus        86 ~~~--~~~~~~~-~~~-~~h~~~i~~l~~~pd~~~~~l~sg~~d~~v  128 (302)
                      ..+  ...|... ..+ ..--..+..|.+.|+  |.+.+..  |+.+
T Consensus       114 pP~~~~~~Wl~~a~~vg~~gw~~~~~lff~p~--G~Lyav~--dg~l  156 (236)
T 1tl2_A          114 PPQSDTDNWIARATEVGSGGWSGFKFLFFHPN--GYLYAVH--GQQF  156 (236)
T ss_dssp             CCCSTTCCHHHHSEEEECSSGGGEEEEEECTT--SCEEEEE--TTEE
T ss_pred             CCcCCCCceeccccEeccCCCCceEEEEECCC--ceEEEEe--CCcE
Confidence            522  1122110 011 111246789999998  6544444  6663

>3b7f_A Glycosyl hydrolase, BNR repeat; 7-bladed beta-propeller fold, structural genomics, joint CEN structural genomics, JCSG; 2.20A {Ralstonia eutropha}

Probab=83.33  E-value=21  Score=30.56  Aligned_cols=83  Identities=14%  Similarity=0.238  Sum_probs=40.9

Q ss_pred             CceeEEEeeCCCCCCccEEEEEec-----------CCeEEEEEeccCCcceeeeeeccCCC------c-EEEEEEccC-C
Q 022111          210 DWVRSVAWAPNLGLPKSTIASASQ-----------DGTVVIWTCAKEGEQWEGRVLKDFKT------P-VWSVSWSLT-G  270 (302)
Q Consensus       210 ~~v~~v~~~p~~~~~~~~l~s~s~-----------D~~i~iwd~~~~~~~~~~~~~~~~~~------~-v~~~~~spd-g  270 (302)
                      ..+.++.++|..   +..|..+..           ++...||........|.... .+...      . ...++++|. .
T Consensus       278 ~~~~~i~~~p~~---~~~l~~~t~~~~~~w~~~~~~~~~~~~~S~DgG~tW~~~~-~glp~~~~~~~~~~~~~~~~p~~~  353 (394)
T 3b7f_A          278 DIGFPIVVHQRD---PRTVWVFPMDGSDVWPRVSPGGKPAVYVTRDAGESWQRQD-RGLPTDQAWLTVKRQAMTADAHAP  353 (394)
T ss_dssp             SCEEEEEECSSC---TTCEEEEECBCCSSTTCCBCCSSCCEEEESSTTSCCEEEC-BTSCCSSCCCCCCTBSEEECCSSS
T ss_pred             cceEEEEECCCC---CCEEEEEeccCCccceeecCCCceeEEEECCCCCCceECC-CCCCCccccceEEEEEEEECCCCC
Confidence            346788888743   233433321           34456776655444554221 11111      1 135788874 3


Q ss_pred             CEEEEecCCceEEeeecCCc-eEEEeee
Q 022111          271 NLLAVADANNVTLWKEAVDG-EWQQVSV  297 (302)
Q Consensus       271 ~~la~~~~d~i~~w~~~~~~-~~~~~~~  297 (302)
                      ..|.++..+ -.||...+.| .|++...
T Consensus       354 ~~l~~g~~~-g~l~~S~D~G~tW~~~~~  380 (394)
T 3b7f_A          354 VGVYFGTTG-GEIWASADEGEHWQCIAS  380 (394)
T ss_dssp             CCEEEECTT-SCEEEESSTTSBCEEEEC
T ss_pred             CEEEEEeCC-CeEEEECCCCCCceEccc
Confidence            445555433 2344444444 4887654

>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}

Probab=80.15  E-value=26  Score=29.61  Aligned_cols=27  Identities=11%  Similarity=0.235  Sum_probs=18.9

Q ss_pred             CeeEEEecCCCCCcEEEEEecCCcEEEEE
Q 022111          104 SVNSIAWAPHELGLSLACGSSDGNISVFT  132 (302)
Q Consensus       104 ~i~~l~~~pd~~~~~l~sg~~d~~v~~~~  132 (302)
                      ....++|.|+  |..|..+...+.|++++
T Consensus        19 ~P~~i~~~pd--G~~l~V~e~~G~i~~~~   45 (353)
T 2g8s_A           19 HPWALAFLPD--NHGMLITLRGGELRHWQ   45 (353)
T ss_dssp             SEEEEEECST--TCCEEEEETTTEEEEEE
T ss_pred             CcEEEEEcCC--CCEEEEEeCCceEEEEe
Confidence            4678999998  55244445678888876

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	302
d1vyhc1	317	b.69.4.1 (C:92-408) Platelet-activating factor ace	2e-19
d1vyhc1	317	b.69.4.1 (C:92-408) Platelet-activating factor ace	2e-10
d1tbga_	340	b.69.4.1 (A:) beta1-subunit of the signal-transduc	3e-16
d1tbga_	340	b.69.4.1 (A:) beta1-subunit of the signal-transduc	1e-13
d1tbga_	340	b.69.4.1 (A:) beta1-subunit of the signal-transduc	9e-13
d1tbga_	340	b.69.4.1 (A:) beta1-subunit of the signal-transduc	2e-04
d1tbga_	340	b.69.4.1 (A:) beta1-subunit of the signal-transduc	5e-04
d1k8kc_	371	b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1	9e-16
d1k8kc_	371	b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1	5e-04
d1sq9a_	393	b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake	1e-15
d1sq9a_	393	b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake	3e-11
d1sq9a_	393	b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake	9e-07
d1sq9a_	393	b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake	6e-06
d1erja_	388	b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea	1e-13
d1erja_	388	b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea	7e-11
d1erja_	388	b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea	7e-11
d1erja_	388	b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea	2e-08
d1erja_	388	b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea	1e-06
d1nr0a2	299	b.69.4.1 (A:313-611) Actin interacting protein 1 {	2e-10
d2ovrb2	342	b.69.4.1 (B:2365-2706) F-box/WD repeat-containing	4e-10
d2ovrb2	342	b.69.4.1 (B:2365-2706) F-box/WD repeat-containing	2e-09
d2ovrb2	342	b.69.4.1 (B:2365-2706) F-box/WD repeat-containing	5e-08
d1yfqa_	342	b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake	1e-09
d1yfqa_	342	b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake	5e-08
d1yfqa_	342	b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake	7e-06
d1gxra_	337	b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum	1e-09
d1gxra_	337	b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum	0.004
d1pgua2	287	b.69.4.1 (A:327-613) Actin interacting protein 1 {	2e-08
d1pgua2	287	b.69.4.1 (A:327-613) Actin interacting protein 1 {	4e-05
d1pgua1	325	b.69.4.1 (A:2-326) Actin interacting protein 1 {Ba	5e-08
d1pgua1	325	b.69.4.1 (A:2-326) Actin interacting protein 1 {Ba	4e-06
d1pgua1	325	b.69.4.1 (A:2-326) Actin interacting protein 1 {Ba	2e-04
d1qksa2	432	b.70.2.1 (A:136-567) C-terminal (heme d1) domain o	7e-08
d1nexb2	355	b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker'	1e-07
d1nexb2	355	b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker'	0.002
d1k32a3	360	b.69.9.1 (A:320-679) Tricorn protease domain 2 {Ar	2e-07
d1k32a3	360	b.69.9.1 (A:320-679) Tricorn protease domain 2 {Ar	3e-07
d1k32a3	360	b.69.9.1 (A:320-679) Tricorn protease domain 2 {Ar	4e-05
d1p22a2	293	b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be	2e-06
d1p22a2	293	b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be	2e-06
d1nr0a1	311	b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne	8e-06
d1hzua2	426	b.70.2.1 (A:118-543) C-terminal (heme d1) domain o	1e-05
d1jmxb_	346	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	4e-04
d1ri6a_	333	b.69.11.1 (A:) Putative isomerase YbhE {Escherichi	0.002
d1pbyb_	337	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	0.004

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 84.4 bits (207), Expect = 2e-19
 Identities = 62/325 (19%), Positives = 103/325 (31%), Gaps = 68/325 (20%)

Query: 8   TGHEDTVHDVAMDFYGKRLATASSDSSIKIIGLSNSASQHLATLKGHRGPVWQVAWAHPK 67
           +GH   V  V        + +AS D++IK+            TLKGH   V  +++ H  
Sbjct: 14  SGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETG--DFERTLKGHTDSVQDISFDHSG 71

Query: 68  F----------------------------------------GSILASCSYDGQVIIWKEG 87
                                                    G  + S S D  + +W   
Sbjct: 72  KLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMW--- 128

Query: 88  NQNDWTQAHTFNDHKSSVNSIAWAPHELGLSLACGSSDGNISVFTATADGGWDTTRIDQA 147
                    TF  H+  V  +       G  +A  S+D  + V+        +     + 
Sbjct: 129 EVQTGYCVKTFTGHREWVRMVRPNQD--GTLIASCSNDQTVRVWVVA---TKECKAELRE 183

Query: 148 HPVGVTSVSWAPAMAPGALVG------LGLLDPVQKLASCGCDNTVKVWKMYNGIWKMDC 201
           H   V  +SWAP  +  ++             P   L S   D T+K+W +  G     C
Sbjct: 184 HRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTG----MC 239

Query: 202 FPALQMHSDWVRSVAWAPNLGLPKSTIASASQDGTVVIWTCAKEGEQWEGRVLKDFKTPV 261
              L  H +WVR V +          I S + D T+ +W    +      + L   +  V
Sbjct: 240 LMTLVGHDNWVRGVLFHSG----GKFILSCADDKTLRVWDYKNKRCM---KTLNAHEHFV 292

Query: 262 WSVSWSLTGNLLAVADANN-VTLWK 285
            S+ +  T   +     +  V +W+
Sbjct: 293 TSLDFHKTAPYVVTGSVDQTVKVWE 317

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 58.2 bits (139), Expect = 2e-10
 Identities = 49/247 (19%), Positives = 82/247 (33%), Gaps = 35/247 (14%)

Query: 50  TLKGHRGPVWQVAWAHPKFGSILASCSYDGQVIIWKEGNQNDWTQAHTFNDHKSSVNSIA 109
            L GHR PV +V + HP   S++ S S D  + +W   +        T   H  SV  I+
Sbjct: 12  ALSGHRSPVTRVIF-HPV-FSVMVSASEDATIKVW---DYETGDFERTLKGHTDSVQDIS 66

Query: 110 WAPHELGLSLACGSSDGNISVFTATADGGWDTTRIDQAHPVGVTSVSWAPAMAPGALVGL 169
           +      L+         +  F                  V +                 
Sbjct: 67  FDHSGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGD------------ 114

Query: 170 GLLDPVQKLASCGCDNTVKVWKMYNGIWKMDCFPALQMHSDWVRSVAWAPNLGLPKSTIA 229
                   + S   D T+K+W++        C      H +WVR V    +     + IA
Sbjct: 115 -------HIVSASRDKTIKMWEV----QTGYCVKTFTGHREWVRMVRPNQD----GTLIA 159

Query: 230 SASQDGTVVIWTCAKEGEQWEGRVLKDFKTPVWSVSWSLTGNLLAVADANNVTLWKEAVD 289
           S S D TV +W  A    +     L++ +  V  +SW+   +  ++++A      K    
Sbjct: 160 SCSNDQTVRVWVVAT---KECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKP 216

Query: 290 GEWQQVS 296
           G +    
Sbjct: 217 GPFLLSG 223

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 75.9 bits (185), Expect = 3e-16
 Identities = 38/178 (21%), Positives = 63/178 (35%), Gaps = 28/178 (15%)

Query: 63  WAHPKFGSILASCSYDGQVIIWKEGNQNDWTQAHTFNDHKSSVNSIAWAPHELGLSLACG 122
            +      +  S + D    +W   +  +     TF  H+S +N+I + P+  G + A G
Sbjct: 190 LSLAPDTRLFVSGACDASAKLW---DVREGMCRQTFTGHESDINAICFFPN--GNAFATG 244

Query: 123 SSDGNISVFTATADGGWDTTRIDQAHPVGVTSVSWAPAMAPGALVGLGLLDPVQKLASCG 182
           S D    +F   AD    T   D     G+TSVS++ +               + L +  
Sbjct: 245 SDDATCRLFDLRADQELMTYSHDN-IICGITSVSFSKSG--------------RLLLAGY 289

Query: 183 CDNTVKVWKMYNGIWKMDCFPALQMHSDWVRSVAWAPNLGLPKSTIASASQDGTVVIW 240
            D    VW         D    L  H + V  +    +       +A+ S D  + IW
Sbjct: 290 DDFNCNVWDALKA----DRAGVLAGHDNRVSCLGVTDD----GMAVATGSWDSFLKIW 339

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 67.8 bits (164), Expect = 1e-13
 Identities = 23/124 (18%), Positives = 49/124 (39%), Gaps = 7/124 (5%)

Query: 8   TGHEDTVHDVAMDFYGKRLATASSDSSIKIIGLSNSASQHLATLKGHRGPVWQVAWAHPK 67
           TGHE  ++ +     G   AT S D++ ++  L         +       +  V+++   
Sbjct: 223 TGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKS- 281

Query: 68  FGSILASCSYDGQVIIWKEGNQNDWTQAHTFNDHKSSVNSIAWAPHELGLSLACGSSDGN 127
            G +L +   D    +W   +     +A     H + V+ +       G+++A GS D  
Sbjct: 282 -GRLLLAGYDDFNCNVW---DALKADRAGVLAGHDNRVSCLGVTDD--GMAVATGSWDSF 335

Query: 128 ISVF 131
           + ++
Sbjct: 336 LKIW 339

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 65.5 bits (158), Expect = 9e-13
 Identities = 35/320 (10%), Positives = 80/320 (25%), Gaps = 61/320 (19%)

Query: 1   MPAQKIETGHEDTVHDVAMDFYGKRLATASSDSSIKIIGLSNSASQHLATLKGHRGPVWQ 60
           M  ++   GH   ++ +      + L +AS D  + I     +    +  +      V  
Sbjct: 45  MRTRRTLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTT--NKVHAIPLRSSWVMT 102

Query: 61  VAWA------------------------------HPKFGSILASCSYDGQVIIWKEGNQN 90
            A+A                                  G                  +  
Sbjct: 103 CAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSG 162

Query: 91  DWTQAHTFNDHKSSVNSIAWAPHELGLSLACGSSDGNISVFTATADGGWDTT-----RID 145
           D T A    +      +      ++        +   +S     +   WD       +  
Sbjct: 163 DTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTF 222

Query: 146 QAHPVGVTSVSWAPAMAPGALVGLGLLDPVQKLASCGCDNTVKVWKMYNGIWKMDCFPAL 205
             H   + ++ + P                   A+   D T +++ +      M      
Sbjct: 223 TGHESDINAICFFPNG--------------NAFATGSDDATCRLFDLRADQELMTYSH-- 266

Query: 206 QMHSDWVRSVAWAPNLGLPKSTIASASQDGTVVIWTCAKEGEQWEGRVLKDFKTPVWSVS 265
                 + SV+++ +       + +   D    +W   K        VL      V  + 
Sbjct: 267 DNIICGITSVSFSKS----GRLLLAGYDDFNCNVWDALKADRA---GVLAGHDNRVSCLG 319

Query: 266 WSLTGNLLAVADANN-VTLW 284
            +  G  +A    ++ + +W
Sbjct: 320 VTDDGMAVATGSWDSFLKIW 339

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 40.1 bits (92), Expect = 2e-04
 Identities = 19/230 (8%), Positives = 53/230 (23%), Gaps = 31/230 (13%)

Query: 88  NQNDWTQAHTFNDHKSSVNSIAWAPHELGLSLACGSSDGNISVFTATADGGWDTTRIDQA 147
            +       T   H + + ++ W        L   S DG + ++ +      +       
Sbjct: 41  GRIQMRTRRTLRGHLAKIYAMHWGTD--SRLLVSASQDGKLIIWDSYT---TNKVHAIPL 95

Query: 148 HPVGVTSVSWAPAM-----------------------APGALVGLGLLDPVQKLASCGCD 184
               V + ++AP+                           +    G    +        +
Sbjct: 96  RSSWVMTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDN 155

Query: 185 NTVKVWKMYNGIWKMDCFPALQMHSDWVRSVAWAPNLGLPKSTIASASQDGTVVIWTCAK 244
             V                              + +L        S + D +  +W   +
Sbjct: 156 QIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVRE 215

Query: 245 EGEQWEGRVLKDFKTPVWSVSWSLTGNLLAVADANNVTLWKEAVDGEWQQ 294
              +   +     ++ + ++ +   GN  A    +      +    +   
Sbjct: 216 GMCR---QTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELM 262

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 38.9 bits (89), Expect = 5e-04
 Identities = 16/81 (19%), Positives = 34/81 (41%), Gaps = 7/81 (8%)

Query: 193 YNGIWKMDCFPALQMHSDWVRSVAWAPNLGLPKSTIASASQDGTVVIWTCAKEGEQWEGR 252
             G  +M     L+ H   + ++ W  +       + SASQDG ++IW         +  
Sbjct: 39  PVGRIQMRTRRTLRGHLAKIYAMHWGTD----SRLLVSASQDGKLIIWDSYT---TNKVH 91

Query: 253 VLKDFKTPVWSVSWSLTGNLL 273
            +    + V + +++ +GN +
Sbjct: 92  AIPLRSSWVMTCAYAPSGNYV 112

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 74.5 bits (181), Expect = 9e-16
 Identities = 40/277 (14%), Positives = 79/277 (28%), Gaps = 11/277 (3%)

Query: 8   TGHEDTVHDVAMDFYGKRLATASSDSSIKIIGLSNSASQHLATLKGHRGPVWQVAWAHPK 67
           +   + +   A +    ++A   ++  + I   S +    +  LK H G V  V WA   
Sbjct: 4   SFLVEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPD- 62

Query: 68  FGSILASCSYDGQVIIWKEGNQNDWTQAHTFNDHKSSVNSIAWAPHELGLSLACGSSDGN 127
             + + +C  D    +W    +    +        +                    S   
Sbjct: 63  -SNRIVTCGTDRNAYVWT--LKGRTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVI 119

Query: 128 ISVFTATADGGWDTTRIDQAHPVGVTSVSWAPAMAPGALVGLGLLDPVQKLASCGCDNTV 187
              +    +  W    I +     V S+ W P     A         +        +   
Sbjct: 120 SICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCDFKCRIFSAYIKEVEERP 179

Query: 188 KVWKMYNGIWKMDCFPALQMHSDWVRSVAWAPNLGLPKSTIASASQDGTVVIWTCAKEGE 247
                 + +   +          WV  V ++ N     S +A  S D TV +    K   
Sbjct: 180 APTPWGSKMPFGELMFESSSSCGWVHGVCFSAN----GSRVAWVSHDSTVCLADADK--- 232

Query: 248 QWEGRVLKDFKTPVWSVSWSLTGNLLAVADANNVTLW 284
           +     L     P+ +V++    +L+A        L+
Sbjct: 233 KMAVATLASETLPLLAVTFITESSLVAAGHDCFPVLF 269

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 39.1 bits (89), Expect = 5e-04
 Identities = 25/191 (13%), Positives = 51/191 (26%), Gaps = 30/191 (15%)

Query: 50  TLKGHRGPVWQVAWAHPKFGSILASCSYDGQVIIWKEGNQNDWTQAHTFNDHKSSVNSIA 109
                 G V  V ++     S +A  S+D  V +    + +      T       + ++ 
Sbjct: 196 ESSSSCGWVHGVCFSANG--SRVAWVSHDSTVCLA---DADKKMAVATLASETLPLLAVT 250

Query: 110 WAPHELGLSLACGSSDGNISVFTATADGGWDTTRIDQAHPVGVTSVSWAPAMAPGALVGL 169
           +       SL     D    +FT      +D+     +    +     +      A    
Sbjct: 251 FITES---SLVAAGHDCFPVLFT------YDSAAGKLSFGGRLDVPKQSSQRGLTARERF 301

Query: 170 GLLDPVQKLASCGCDNTVKVWKMYNGIWKMDCFPALQMHSDWVRSVAWAPNLGLPKSTIA 229
             LD  +  +         +                 +H + V  ++         S   
Sbjct: 302 QNLD-KKASSEGSAAAGAGLD---------------SLHKNSVSQISVLSGGKAKCSQFC 345

Query: 230 SASQDGTVVIW 240
           +   DG + IW
Sbjct: 346 TTGMDGGMSIW 356

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 74.5 bits (181), Expect = 1e-15
 Identities = 30/253 (11%), Positives = 68/253 (26%), Gaps = 23/253 (9%)

Query: 9   GHEDTVHDVAMDFYGKRLATASSDSSIKI---------IGLSNSASQHLATLKGHRGPVW 59
            H+  +  V+         + S D  +K+              S S  +     H   V 
Sbjct: 12  AHDADIFSVS--ACNSFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVL 69

Query: 60  QVAWAHPKFGSILASCSYDGQVIIWKEGNQND-------WTQAHTFNDHKSSVNSIAWAP 112
           Q          ++A+ S+ G ++ ++   +++              +  K S  ++ W  
Sbjct: 70  QAIERDAFELCLVATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGA 129

Query: 113 HELGLS---LACGSSDGNISVFTATADGGWDTTRIDQAHPVGVTSVSWAPAMAPGALVGL 169
               L    L      G   ++          +      P      +    M P      
Sbjct: 130 SNDRLLSHRLVATDVKGTTYIWKFHPFADESNSLTLNWSPTLELQGTVESPMTPSQFATS 189

Query: 170 GLLDPVQKLASCGCDNTVKVWKMYNGIWKMDCFPALQMHSDWVRSVAWAPNLGLPKSTIA 229
             +     +A+   + TV++ ++       +     Q       +   +       S +A
Sbjct: 190 VDISERGLIATGFNNGTVQISELSTLRPLYNFES--QHSMINNSNSIRSVKFSPQGSLLA 247

Query: 230 SASQDGTVVIWTC 242
            A    +    T 
Sbjct: 248 IAHDSNSFGCITL 260

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 61.0 bits (146), Expect = 3e-11
 Identities = 41/277 (14%), Positives = 76/277 (27%), Gaps = 50/277 (18%)

Query: 50  TLKGHRGPVWQVAWAHPKFGSILASCSYDGQVIIWK--------EGNQNDWTQAHTFNDH 101
             K H   ++ V+       S   SCS DG + +W           +++     H    H
Sbjct: 9   AGKAHDADIFSVSAC----NSFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLH 64

Query: 102 KSSVNSIAWAPHELGLSLACGSSDGNISVF-------TATADGGWDTTRIDQAHPVGVTS 154
              V             +A  S  G++  +       T                     +
Sbjct: 65  HVDVLQAIERDAFELCLVATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWA 124

Query: 155 VSWAPAMAPGALVGLGLLDPVQKLASCGCDNTVKVWKMYNGIWKMDCFPA---------- 204
           + W  +                +L +     T  +WK +    + +              
Sbjct: 125 LKWGAS---------NDRLLSHRLVATDVKGTTYIWKFHPFADESNSLTLNWSPTLELQG 175

Query: 205 ----LQMHSDWVRSVAWAPNLGLPKSTIASASQDGTVVIWTCAKEGEQWEGRVLKDFKT- 259
                   S +  SV  +         IA+   +GTV I   +     +           
Sbjct: 176 TVESPMTPSQFATSVDISER-----GLIATGFNNGTVQISELSTLRPLYNFESQHSMINN 230

Query: 260 --PVWSVSWSLTGNLLAVADANNVTLWKEAVDGEWQQ 294
              + SV +S  G+LLA+A  +N        + E+ +
Sbjct: 231 SNSIRSVKFSPQGSLLAIAHDSNSFGCITLYETEFGE 267

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 47.5 bits (111), Expect = 9e-07
 Identities = 29/223 (13%), Positives = 62/223 (27%), Gaps = 13/223 (5%)

Query: 45  SQHLATLKGHRGPVWQVAWAHPKFGSILASCSYDGQVIIWKEGNQNDWTQAHTFNDHKSS 104
              + +          V  +      ++A+   +G V I +           + +   ++
Sbjct: 174 QGTVESPMTPSQFATSVDISE---RGLIATGFNNGTVQISELSTLRPLYNFESQHSMINN 230

Query: 105 VNSIAWAPHELGLSLACGSSDGNISVFTATADGGWDTTRIDQAHPVGVTSVSWAPAMAPG 164
            NSI         SL   + D N        +  +       + P   +  S        
Sbjct: 231 SNSIRSVKFSPQGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSS 290

Query: 165 ALVGLGLLDPVQKLASCGCDNTVKVWKMYNGIWKMDCFPALQMHSDWVRSVAWAPNLGLP 224
            ++ L   D  + L S G D  ++ W +       +    L MH D +        +   
Sbjct: 291 WVMSLSFNDSGETLCSAGWDGKLRFWDVKTK----ERITTLNMHCDDIEIEEDILAVDEH 346

Query: 225 KSTIASASQDGTVVIWTCAKEGEQWEGRVLKDFKTPVWSVSWS 267
             ++A         ++      + W   +  D    +  V   
Sbjct: 347 GDSLAEPG------VFDVKFLKKGWRSGMGADLNESLCCVCLD 383

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 44.8 bits (104), Expect = 6e-06
 Identities = 22/167 (13%), Positives = 49/167 (29%), Gaps = 21/167 (12%)

Query: 93  TQAHTFNDHKSSVNSIAWAPHELGLSLACGSSDGNISVF---TATADGGWDTTRIDQAHP 149
             A+    H + + S++             S DG + V+       +   D +     H 
Sbjct: 5   ATANAGKAHDADIFSVSACNS----FTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHK 60

Query: 150 VGVTSVSWAPAMAPGALVGLGLLDPVQKLASCGCDNTVKVWKMYNG------IWKMDCFP 203
            G+  V    A+   A         +  +A+      +  +++         I++     
Sbjct: 61  SGLHHVDVLQAIERDA-------FELCLVATTSFSGDLLFYRITREDETKKVIFEKLDLL 113

Query: 204 ALQMHSDWVRSVAWAPN-LGLPKSTIASASQDGTVVIWTCAKEGEQW 249
              M      ++ W  +   L    + +    GT  IW      ++ 
Sbjct: 114 DSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADES 160

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 68.3 bits (165), Expect = 1e-13
 Identities = 36/188 (19%), Positives = 62/188 (32%), Gaps = 17/188 (9%)

Query: 59  WQVAWAHPKFGSILASCSYDGQVIIWKEGNQNDW----TQAHTFNDHKSSVNSIAWAPHE 114
                  P  G  +A+ S D  V +W            ++  +   HK SV S+ +    
Sbjct: 207 VTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRD- 265

Query: 115 LGLSLACGSSDGNISVFTATADGGWDTTRIDQAHPVGVTSVSWAPAMAPGALVGLGLLDP 174
            G S+  GS D ++ ++        +      +      +           ++ +     
Sbjct: 266 -GQSVVSGSLDRSVKLWNL-----QNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQN 319

Query: 175 VQKLASCGCDNTVKVWKMYNGIWKMDCFPALQMHSDWVRSVAWAPNLGLPK--STIASAS 232
            + + S   D  V  W   +G    +    LQ H + V SVA A    L    +  A+ S
Sbjct: 320 DEYILSGSKDRGVLFWDKKSG----NPLLMLQGHRNSVISVAVANGSSLGPEYNVFATGS 375

Query: 233 QDGTVVIW 240
            D    IW
Sbjct: 376 GDCKARIW 383

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 60.2 bits (144), Expect = 7e-11
 Identities = 38/197 (19%), Positives = 65/197 (32%), Gaps = 29/197 (14%)

Query: 10  HEDTVHDVAMDFYGKRLATASSDSSIKIIGLSNSASQH-----LATLKGHRGPVWQVAWA 64
            +           GK +A  S D ++++                 +  GH+  V+ V + 
Sbjct: 204 EDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFT 263

Query: 65  HPKFGSILASCSYDGQVIIWKEGNQND---------WTQAHTFNDHKSSVNSIAWAPHEL 115
               G  + S S D  V +W   N N+          T   T+  HK  V S+A   +  
Sbjct: 264 RD--GQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQN-- 319

Query: 116 GLSLACGSSDGNISVFTATADGGWDTTRIDQAHPVGVTSVSWAPAMAPGALVGLGLLDPV 175
              +  GS D  +  +   +    +   + Q H   V SV+ A   + G           
Sbjct: 320 DEYILSGSKDRGVLFWDKKS---GNPLLMLQGHRNSVISVAVANGSSLGP--------EY 368

Query: 176 QKLASCGCDNTVKVWKM 192
              A+   D   ++WK 
Sbjct: 369 NVFATGSGDCKARIWKY 385

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 60.2 bits (144), Expect = 7e-11
 Identities = 34/138 (24%), Positives = 55/138 (39%), Gaps = 19/138 (13%)

Query: 8   TGHEDTVHDVAMDFYGKRLATASSDSSIKIIGLSNSASQ----------HLATLKGHRGP 57
           TGH+D+V+ V     G+ + + S D S+K+  L N+ ++             T  GH+  
Sbjct: 251 TGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDF 310

Query: 58  VWQVAWAHPKFGSILASCSYDGQVIIWKEGNQNDWTQAHTFNDHKSSVNSIAWAP----H 113
           V  VA         + S S D  V+ W   ++           H++SV S+A A      
Sbjct: 311 VLSVATTQN--DEYILSGSKDRGVLFW---DKKSGNPLLMLQGHRNSVISVAVANGSSLG 365

Query: 114 ELGLSLACGSSDGNISVF 131
                 A GS D    ++
Sbjct: 366 PEYNVFATGSGDCKARIW 383

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 52.5 bits (124), Expect = 2e-08
 Identities = 59/348 (16%), Positives = 95/348 (27%), Gaps = 94/348 (27%)

Query: 9   GHEDTVHDVAMDFYGKRLATASSDS---------------SIKIIGLSNSASQHLATLKG 53
            H   V  V     G+ LAT  + +               S       +  + + ++   
Sbjct: 60  DHTSVVCCVKFSNDGEYLATGCNKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPS 119

Query: 54  HRGPVWQVAWAHPKFGSILASCSYDGQVIIWKEGNQND---------------------- 91
               +  V ++    G  LA+ + D  + IW   N+                        
Sbjct: 120 SDLYIRSVCFSP--DGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDK 177

Query: 92  ---------------WTQAHTFNDHKSSVNSIAWAPHELGLSLACGSSDGNISVFTATAD 136
                           T   +         +        G  +A GS D  + V+ +   
Sbjct: 178 LVSGSGDRTVRIWDLRTGQCSLTLSIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETG 237

Query: 137 GGWDT----TRIDQAHPVGVTSVSWAPAMAPGALVGLGLLDPVQKLASCGCDNTVKVWKM 192
              +           H   V SV +                  Q + S   D +VK+W +
Sbjct: 238 FLVERLDSENESGTGHKDSVYSVVFTRDG--------------QSVVSGSLDRSVKLWNL 283

Query: 193 YNG--------IWKMDCFPALQMHSDWVRSVAWAPNLGLPKSTIASASQDGTVVIWTCAK 244
            N              C      H D+V SVA   N       I S S+D  V+ W   K
Sbjct: 284 QNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQN----DEYILSGSKDRGVLFWD-KK 338

Query: 245 EGEQWEGRVLKDFKTPVWSV------SWSLTGNLLAVADANN-VTLWK 285
            G      +L+  +  V SV      S     N+ A    +    +WK
Sbjct: 339 SGNPL--LMLQGHRNSVISVAVANGSSLGPEYNVFATGSGDCKARIWK 384

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 46.7 bits (109), Expect = 1e-06
 Identities = 31/251 (12%), Positives = 62/251 (24%), Gaps = 19/251 (7%)

Query: 48  LATLKGHRGPVWQVAWAHPKFGSILASCSYDGQVIIWKEGNQNDWTQAHTFNDHKSSVNS 107
           L     H   V  V +++   G  LA+   +    ++     +D +     +D  ++   
Sbjct: 55  LHKSLDHTSVVCCVKFSND--GEYLATGC-NKTTQVY---RVSDGSLVARLSDDSAANKD 108

Query: 108 IAWAPHELGLSLACGSSDGNISVFTATADGGWDTTRIDQAHPVGVTSVSWAPAMAPGALV 167
                     + +  SSD  I     + DG +  T  +          +    M      
Sbjct: 109 PENLN-----TSSSPSSDLYIRSVCFSPDGKFLATGAEDRLIRIWDIENRKIVMILQGHE 163

Query: 168 GLGLLDPVQKLASCGCDNTVKVWKMYNGIWKMDCFPALQMHSDWVRSVAWAPNLGLPKST 227
                             +         +    C   L +            +       
Sbjct: 164 QDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTLSIEDGVTTVAVSPGD----GKY 219

Query: 228 IASASQDGTVVIWTCAKEGEQW----EGRVLKDFKTPVWSVSWSLTGNLLAVADANNVTL 283
           IA+ S D  V +W             E       K  V+SV ++  G  +     +    
Sbjct: 220 IAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVK 279

Query: 284 WKEAVDGEWQQ 294
                +   + 
Sbjct: 280 LWNLQNANNKS 290

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 58.1 bits (138), Expect = 2e-10
 Identities = 37/295 (12%), Positives = 74/295 (25%), Gaps = 18/295 (6%)

Query: 4   QKIETGHEDTVHDVAMDFYGKRLATASSDSSIKIIGLSNSASQHLATLKGHRGPVWQVAW 63
            ++  GH   +  ++    GK L +A ++  I    +S   S        H   +  +  
Sbjct: 5   DQVRYGHNKAITALSSSADGKTLFSADAEGHINSWDISTGISNR-VFPDVHATMITGIKT 63

Query: 64  AHPKFGSILASCSYDGQVIIWKEGNQNDWTQAHTFNDHKSSVNSIAWAPHELGLSLACGS 123
                   L + S+D  + +   G     +     N   S    +A +        AC  
Sbjct: 64  TSKGD---LFTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAACYK 120

Query: 124 SDGNISVFTATADGGWDTTRIDQAHPVGVTSVSWAPAMAPGALVGLGLLDPVQKLASCGC 183
                S    T       +                           G      K      
Sbjct: 121 HIAIYSHGKLTEVPISYNSSCVALSNDKQFVAVGGQDSKVHVYKLSGASVSEVKTIVHPA 180

Query: 184 DNTVKVWKMYNGIWKM--------------DCFPALQMHSDWVRSVAWAPNLGLPKSTIA 229
           + T   +                       +   A      +  +     +       +A
Sbjct: 181 EITSVAFSNNGAFLVATDQSRKVIPYSVANNFELAHTNSWTFHTAKVACVSWSPDNVRLA 240

Query: 230 SASQDGTVVIWTCAKEGEQWEGRVLKDFKTPVWSVSWSLTGNLLAVADANNVTLW 284
           + S D +V++W   K  +           + V SV W     +++    +N+  W
Sbjct: 241 TGSLDNSVIVWNMNKPSDHPIIIKGAHAMSSVNSVIWLNETTIVSAGQDSNIKFW 295

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 57.5 bits (137), Expect = 4e-10
 Identities = 47/292 (16%), Positives = 86/292 (29%), Gaps = 24/292 (8%)

Query: 3   AQKIETGHEDTVHDVAMDFYGKRLATASSDSSIKIIGLSNSASQHLATLKGHRGPVWQVA 62
           + K+  GH+D V    + F G R+ + S D+++K+        + L TL GH G VW   
Sbjct: 8   SPKVLKGHDDHVIT-CLQFCGNRIVSGSDDNTLKVWSAVT--GKCLRTLVGHTGGVWSSQ 64

Query: 63  WAHPKFGSILASCSYDGQVIIWKEGNQNDWTQAHTFNDHKSSVNSIAWAPHELGLSLACG 122
                  S     +         E     +    T          +     +  L +   
Sbjct: 65  MRDNIIISGSTDRTLKVWNAETGECIHTLYGHTSTVRCMHLHEKRVVSGSRDATLRVWDI 124

Query: 123 SSDGNISVF-----TATADGGWDTTRIDQAHPVGVTSVSWAPAMAPGALVGLGLLDPVQK 177
            +   + V                  +  A+   V             L G        +
Sbjct: 125 ETGQCLHVLMGHVAAVRCVQYDGRRVVSGAYDFMVKVWDPETETCLHTLQGHTNRVYSLQ 184

Query: 178 -----LASCGCDNTVKVWKMYNGIWKMDCFPALQMHSDWVRSVAWAPNLGLPKSTIASAS 232
                + S   D +++VW +       +C   L  H      +    N+      + S +
Sbjct: 185 FDGIHVVSGSLDTSIRVWDV----ETGNCIHTLTGHQSLTSGMELKDNI------LVSGN 234

Query: 233 QDGTVVIWTCAKEGEQWEGRVLKDFKTPVWSVSWSLTGNLLAVADANNVTLW 284
            D TV IW           +     ++ V  + ++    + +  D   V LW
Sbjct: 235 ADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFNKNFVITSSDD-GTVKLW 285

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 55.6 bits (132), Expect = 2e-09
 Identities = 39/237 (16%), Positives = 77/237 (32%), Gaps = 34/237 (14%)

Query: 4   QKIETGHEDTVHDVAMDFYGKRLATASSDSSIKIIGLSNSASQHLATLKGHRGPVWQVAW 63
           Q +            + + G+R+ + + D  +K+          L TL+GH   V+ + +
Sbjct: 128 QCLHVLMGHVAAVRCVQYDGRRVVSGAYDFMVKVWDPETE--TCLHTLQGHTNRVYSLQF 185

Query: 64  AHPKFGSILASCSYDGQVIIWKEGNQNDWTQAHTFNDHKSSVNSIAWAPHELGLSLACGS 123
                G  + S S D  + +W   +       HT   H+S  + +    + L      G+
Sbjct: 186 ----DGIHVVSGSLDTSIRVW---DVETGNCIHTLTGHQSLTSGMELKDNIL----VSGN 234

Query: 124 SDGNISVFTATADGGWDTTRIDQAHPVGVTSVSWAPAMAPGALVGLGLLDPVQKLASCGC 183
           +D  + ++         T +    H   VT + +                    + +   
Sbjct: 235 ADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFNK----------------NFVITSSD 278

Query: 184 DNTVKVWKMYNG-IWKMDCFPALQMHSDWVRSVAWAPNLGLPKSTIASASQDGTVVI 239
           D TVK+W +  G   +             V  +  +      K   A  S++GT   
Sbjct: 279 DGTVKLWDLKTGEFIRNLVTLESGGSGGVVWRIRASNT----KLVCAVGSRNGTEET 331

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 51.0 bits (120), Expect = 5e-08
 Identities = 42/224 (18%), Positives = 68/224 (30%), Gaps = 35/224 (15%)

Query: 59  WQVAWAHPKFGSILASCSYDGQVIIWKEGNQNDWTQAHTFNDHKSSVNSIAWAPHELGLS 118
                     G  + S +YD  V +W   +    T  HT   H + V S+ +    +   
Sbjct: 137 VAAVRCVQYDGRRVVSGAYDFMVKVW---DPETETCLHTLQGHTNRVYSLQFDGIHV--- 190

Query: 119 LACGSSDGNISVFTATADGGWDTTRIDQAHPVGVTSVSWAPAMAPGALVGLGLLDPVQKL 178
              GS D +I V+        +       H    + +     +                L
Sbjct: 191 -VSGSLDTSIRVWDVE---TGNCIHTLTGHQSLTSGMELKDNI----------------L 230

Query: 179 ASCGCDNTVKVWKMYNGIWKMDCFPALQMHSDWVRSVAWAPNLGLPKSTIASASQDGTVV 238
            S   D+TVK+W +  G            H   V  + +  N       + ++S DGTV 
Sbjct: 231 VSGNADSTVKIWDIKTGQCLQTLQGP-NKHQSAVTCLQFNKNF------VITSSDDGTVK 283

Query: 239 IWTCA--KEGEQWEGRVLKDFKTPVWSVSWSLTGNLLAVADANN 280
           +W     +                VW +  S T  + AV   N 
Sbjct: 284 LWDLKTGEFIRNLVTLESGGSGGVVWRIRASNTKLVCAVGSRNG 327

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 56.0 bits (133), Expect = 1e-09
 Identities = 33/322 (10%), Positives = 78/322 (24%), Gaps = 58/322 (18%)

Query: 5   KIETGHEDTVHDVAMDFYGKRLATASSDSSIKIIGL-SNSASQHLATLKGHRGPVWQVAW 63
           +IE   +D + D+ +      L   S D S+ +      + +  L     ++ P+    +
Sbjct: 5   QIEQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNF 64

Query: 64  AHPKFGSILASCSYDGQVIIWKEGNQNDW------------------------------- 92
                  I         + +   G+ +                                 
Sbjct: 65  IDNTDLQIYVGTVQGEILKVDLIGSPSFQALTNNEANLGICRICKYGDDKLIAASWDGLI 124

Query: 93  ------------TQAHTFNDHKSSVNSIAWAPHELGLSLACGSSDGNISVFTATADGGWD 140
                             N + + V +  +        L  G ++  +  F        D
Sbjct: 125 EVIDPRNYGDGVIAVKNLNSNNTKVKNKIFTMDTNSSRLIVGMNNSQVQWF--RLPLCED 182

Query: 141 TTRIDQAHPVGVTSVSWAPAMAPGALVGLGLLDPVQKLASCGCDNTVKVWKMYNGIWKMD 200
                +   +       A             +D    +                      
Sbjct: 183 DNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCHR 242

Query: 201 CFPALQMHSDWVRSVAWAPNLGLPKSTIASASQDGTVVIWTCAKEGEQWEGRVLKDFKT- 259
                   +  V S+ ++P        + +A  DG +  W           + +K+F   
Sbjct: 243 LNLKDTNLAYPVNSIEFSPR----HKFLYTAGSDGIISCWNLQT------RKKIKNFAKF 292

Query: 260 -PVWSVSWSLTGNLLAVADANN 280
                V  + + N+L +A +++
Sbjct: 293 NEDSVVKIACSDNILCLATSDD 314

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 51.0 bits (120), Expect = 5e-08
 Identities = 12/77 (15%), Positives = 29/77 (37%), Gaps = 4/77 (5%)

Query: 199 MDCFPALQMHSDWVRSVAWAPNLGLPKSTIASASQDGTVVIWTCAKEGEQWEGRVLKDFK 258
           M      Q   D++  +   P+    KS +   S DG++ ++    + +  +      +K
Sbjct: 1   MQIVQIEQAPKDYISDIKIIPS----KSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYK 56

Query: 259 TPVWSVSWSLTGNLLAV 275
            P+   ++    +L   
Sbjct: 57  HPLLCCNFIDNTDLQIY 73

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 44.8 bits (104), Expect = 7e-06
 Identities = 14/86 (16%), Positives = 30/86 (34%), Gaps = 3/86 (3%)

Query: 46  QHLATLKGHRGPVWQVAWAHPKFGSILASCSYDGQVIIWKEGNQNDWTQAHTFNDHKSSV 105
           Q +   +  +  +  +    P   S+L   S+DG + ++K   Q           +K  +
Sbjct: 2   QIVQIEQAPKDYISDIKI-IPS-KSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPL 59

Query: 106 NSIAWAPHELGLSLACGSSDGNISVF 131
               +  +   L +  G+  G I   
Sbjct: 60  LCCNFIDNT-DLQIYVGTVQGEILKV 84

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 56.0 bits (133), Expect = 1e-09
 Identities = 29/297 (9%), Positives = 68/297 (22%), Gaps = 31/297 (10%)

Query: 9   GHEDTVHDVAMDFYGKRLATASSDSSIKIIGLSNSASQH---LATLKGHRGPVWQVAWAH 65
            H + V  V +    + + T      +K+  +S+  ++              +       
Sbjct: 49  NHGEVVCAVTISNPTRHVYTGG-KGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLP 107

Query: 66  PKFGSILASCSYDGQVIIWKEGNQNDWTQAHTFNDHKSSVNSIAWAPHELGLSLACGSSD 125
              G  L        + IW         +A   +   +          ++  S     + 
Sbjct: 108 D--GCTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDSKVCFSCCSDGNI 165

Query: 126 GNISVFTATADGGWDTTRIDQAHPVGVTSVSWAPAMA------------PGALVGLGLLD 173
               +   T    +       +        +                     L       
Sbjct: 166 AVWDLHNQTLVRQFQGHTDGASCIDISNDGTKLWTGGLDNTVRSWDLREGRQLQQHDFTS 225

Query: 174 PVQKLASCGCDNTVKVWKMYNGIWKMD----CFPALQMHSDWVRSVAWAPNLGLPKSTIA 229
            +  L  C     + V    + +  +         L +H   V S+ +A           
Sbjct: 226 QIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDKYQLHLHESCVLSLKFAYC----GKWFV 281

Query: 230 SASQDGTVVIWTCAKEGEQWEGRVLKDFKTPVWSVSWSLTGNLLAVADANN-VTLWK 285
           S  +D  +  W                  + V S   S+    +     +   T+++
Sbjct: 282 STGKDNLLNAW----RTPYGASIFQSKESSSVLSCDISVDDKYIVTGSGDKKATVYE 334

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.9 bits (81), Expect = 0.004
 Identities = 12/89 (13%), Positives = 24/89 (26%), Gaps = 7/89 (7%)

Query: 208 HSDWVRSVAWAPNLGLPKSTIASASQDGTVVIWTCAKEGEQWEGRVLKDF--KTPVWSVS 265
           H + V +V  +         + +    G V +W  +  G +     L        + S  
Sbjct: 50  HGEVVCAVTISNP----TRHVYTGG-KGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCK 104

Query: 266 WSLTGNLLAVADANNVTLWKEAVDGEWQQ 294
               G  L V    +     +      + 
Sbjct: 105 LLPDGCTLIVGGEASTLSIWDLAAPTPRI 133

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 52.3 bits (123), Expect = 2e-08
 Identities = 32/290 (11%), Positives = 75/290 (25%), Gaps = 26/290 (8%)

Query: 8   TGHEDTVHDVAMDFYGKRLATASSDSSIKIIGLSNSASQHLATLKGHRGPVWQVAWAHPK 67
           +GH   +  + ++     L + S D  I     S+         + H   +  +  +  +
Sbjct: 10  SGHNKGITALTVN----PLISGSYDGRIMEWSSSS-------MHQDHSNLIVSLDNSKAQ 58

Query: 68  FGSILASCSYDGQVIIWKEGNQNDWTQAHTFNDHKSSVNSIAWAPHELGLSLACGSSDGN 127
             S ++         I K    +    A   ND  ++V +       +  S         
Sbjct: 59  EYSSISWDDTLKVNGITKHEFGSQPKVASANNDGFTAVLTNDD-DLLILQSFTGDIIKSV 117

Query: 128 ISVFTATADGGWDTTRIDQAHPVGVTSVSWAPAMAPGALVGLGLLDPVQKLAS------- 180
                 +A                   V     +     +   L      ++        
Sbjct: 118 RLNSPGSAVSLSQNYVAVGLEEGNTIQVFKLSDLEVSFDLKTPLRAKPSYISISPSETYI 177

Query: 181 -----CGCDNTVKVWKMYNGIWKMDCFPALQMHSDWVRSVAWAPNLGLPKSTIASASQDG 235
                 G      +        +     +      W  +   A    + +  +A+ S D 
Sbjct: 178 AAGDVMGKILLYDLQSREVKTSRWAFRTSKINAISWKPAEKGANEEEIEEDLVATGSLDT 237

Query: 236 TVVIWTCAKEGEQWEGRVLKDFKTPVWSVSWSLTGNLLAVADANNVTLWK 285
            + I++  +  +    + L   K  V ++ W     L++      +  W 
Sbjct: 238 NIFIYSVKRPMKII--KALNAHKDGVNNLLWETPSTLVSSGADACIKRWN 285

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 41.9 bits (96), Expect = 4e-05
 Identities = 33/202 (16%), Positives = 63/202 (31%), Gaps = 17/202 (8%)

Query: 48  LATLKGHRGPVWQVAWAHPKFGSILASCSYDGQVIIWKEGNQNDWTQAHTFNDHKSSVNS 107
           L T+ GH   +  +        + L S SYDG+++ W          +    DH + + S
Sbjct: 6   LKTISGHNKGITALTV------NPLISGSYDGRIMEWS--------SSSMHQDHSNLIVS 51

Query: 108 IAWAPHELGLSLACGSSDGNISVFTATADGGWDTTRIDQAHPVGVTSVSWAPAMAPGALV 167
           +  +  +     +  S D  + V   T        ++  A+  G T+V            
Sbjct: 52  LDNSKAQE---YSSISWDDTLKVNGITKHEFGSQPKVASANNDGFTAVLTNDDDLLILQS 108

Query: 168 GLGLLDPVQKLASCGCDNTVKVWKMYNGIWKMDCFPALQMHSDWVRSVAWAPNLGLPKST 227
             G +    +L S G   ++    +  G+ + +     ++    V      P    P   
Sbjct: 109 FTGDIIKSVRLNSPGSAVSLSQNYVAVGLEEGNTIQVFKLSDLEVSFDLKTPLRAKPSYI 168

Query: 228 IASASQDGTVVIWTCAKEGEQW 249
             S S+          K     
Sbjct: 169 SISPSETYIAAGDVMGKILLYD 190

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 325

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 51.1 bits (120), Expect = 5e-08
 Identities = 31/306 (10%), Positives = 69/306 (22%), Gaps = 33/306 (10%)

Query: 13  TVHDVAMDFYGKRLATASSDSS-IKIIGLSNSASQHLATLKGHRG-PVWQVAWAHPKFGS 70
               ++ D     +A     S+ ++ +   +S    +    GH    V  V ++  K   
Sbjct: 19  FTTHLSYDPTTNAIAYPCGKSAFVRCLDDGDSKVPPVVQFTGHGSSVVTTVKFSPIKGSQ 78

Query: 71  ILASCSYDGQVIIWKEGNQNDWTQAHTFND-----HKSSVNSIAWAPHELGLSLACGSSD 125
            L S    G+VI+W      +                  ++ I+W      L +     D
Sbjct: 79  YLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCVVGEGRD 138

Query: 126 GNISVFTATADGGWDTTRIDQAHPVGVTSVSWAPAMAPGALVGLGLLDPVQKLASC---- 181
                 +  +                       P  +        ++             
Sbjct: 139 NFGVFISWDSGNSLGEVSGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPFKFSASD 198

Query: 182 ---------------------GCDNTVKVWKMYNGIWKMDCFPALQMHSDWVRSVAWAPN 220
                                         K+     K   F                  
Sbjct: 199 RTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFLKYIEDDQEPVQGGIFAL 258

Query: 221 LGLPKSTIASASQDGTVVIWTCAKEGEQWEGRVLKDFKT-PVWSVSWSLTGNLLAVADAN 279
             L     A+   D T+ +W         +  + K         V  +  G +++++   
Sbjct: 259 SWLDSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVATGNGRIISLSLDG 318

Query: 280 NVTLWK 285
            +  ++
Sbjct: 319 TLNFYE 324

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 325

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 45.3 bits (105), Expect = 4e-06
 Identities = 24/161 (14%), Positives = 52/161 (32%), Gaps = 8/161 (4%)

Query: 54  HRGPVWQVAWAHPKFGSILASCSYDGQVIIWKEGNQNDWTQAHTFNDHKSS-VNSIAWAP 112
            R     +++  P   + +A        +   +   +       F  H SS V ++ ++P
Sbjct: 16  QRNFTTHLSY-DPT-TNAIAYPCGKSAFVRCLDDGDSKVPPVVQFTGHGSSVVTTVKFSP 73

Query: 113 HELGLSLACGSSDGNISVFTATADGGWDTT-----RIDQAHPVGVTSVSWAPAMAPGALV 167
            +    L  G   G + V+  T D   ++         Q     ++ +SW        +V
Sbjct: 74  IKGSQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCVV 133

Query: 168 GLGLLDPVQKLASCGCDNTVKVWKMYNGIWKMDCFPALQMH 208
           G G  +    ++    ++  +V      I       +  M 
Sbjct: 134 GEGRDNFGVFISWDSGNSLGEVSGHSQRINACHLKQSRPMR 174

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 325

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 39.9 bits (91), Expect = 2e-04
 Identities = 13/76 (17%), Positives = 27/76 (35%), Gaps = 1/76 (1%)

Query: 10  HEDTVHDVAMDFYGKRLATASSDSSIKIIGLSNSASQHLATLKGHRGPVWQVAWAHPKFG 69
                         ++ AT  +D++I++  ++ S      TL   +    QV        
Sbjct: 250 PVQGGIFALSWLDSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVATG-N 308

Query: 70  SILASCSYDGQVIIWK 85
             + S S DG +  ++
Sbjct: 309 GRIISLSLDGTLNFYE 324

>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]} Length = 432

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Paracoccus denitrificans [TaxId: 266]

 Score = 50.9 bits (121), Expect = 7e-08
 Identities = 35/264 (13%), Positives = 71/264 (26%), Gaps = 23/264 (8%)

Query: 4   QKIETGHEDTVHDVAMDFYGKRLATASSDSSIKIIGLSNSASQHLATLK---GHRGPVWQ 60
             ++TG+   VH   +   G+ L     D  + +I L       +A +K     R     
Sbjct: 56  TVLDTGYA--VHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIGSEARSIETS 113

Query: 61  VAWAHPKFGSILASCSYDGQVIIWKEGNQNDWTQAHTFNDHKSSVNSIAWAPHELGLSLA 120
                 +    +A   +  Q +I    +          +    + +   + P     ++ 
Sbjct: 114 KMEG-WEDKYAIAGAYWPPQYVIM---DGETLEPKKIQSTRGMTYDEQEYHPEPRVAAIL 169

Query: 121 CGSSDGNISVFTATADGGWDTTRIDQAHPVGVTSVSWAPAMAPGALVGLGLLDPVQKLAS 180
             S      +      G          + +  T +S    +  G       LD   +   
Sbjct: 170 -ASHYRPEFIVNVKETGKILLVDYTDLNNLKTTEISAERFLHDGG------LDGSHRYFI 222

Query: 181 CGCDNTVKVWKMYNGIWKMDCFPALQMHSDWVRSVAWAPNLGLPKS---TIASASQDGTV 237
              +   K+  +     K     A++             N   P        S   D +V
Sbjct: 223 TAANARNKLVVID---TKEGKLVAIEDTGGQTPHPGRGANFVHPTFGPVWATSHMGDDSV 279

Query: 238 -VIWTCAKEGEQWEGRVLKDFKTP 260
            +I T  +       ++L  F   
Sbjct: 280 ALIGTDPEGHPDNAWKILDSFPAL 303

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 49.9 bits (117), Expect = 1e-07
 Identities = 33/161 (20%), Positives = 57/161 (35%), Gaps = 9/161 (5%)

Query: 1   MPAQKIETGHEDTVHDVAMDFYGKRLATASSDSSIKIIGLSNSASQHLATLKGHRGPVWQ 60
           +P +    GH  +V    + F    + T + D  I++    N   + L  L GH G VW 
Sbjct: 2   VPQRTTLRGHMTSVIT-CLQFEDNYVITGADDKMIRVYDSINK--KFLLQLSGHDGGVWA 58

Query: 61  VAWAHPKFGSILASCSYDGQVIIWKEGNQNDWTQAHTFNDHKSSVNSIAWAPHELGLSLA 120
           + +AH   G IL S S D  V +W              N     ++ + +   +      
Sbjct: 59  LKYAH---GGILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYI---V 112

Query: 121 CGSSDGNISVFTATADGGWDTTRIDQAHPVGVTSVSWAPAM 161
            GS D  + V+    +        +  +P+   +    P  
Sbjct: 113 TGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYF 153

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 37.2 bits (84), Expect = 0.002
 Identities = 18/110 (16%), Positives = 35/110 (31%), Gaps = 9/110 (8%)

Query: 176 QKLASCGCDNTVKVWKMYNGIWKMDCFPALQMHSDWVRSVAWAPNLGLPKSTIASASQDG 235
             + +   D  ++V+   N          L  H   V ++ +A         + S S D 
Sbjct: 24  NYVITGADDKMIRVYDSINK----KFLLQLSGHDGGVWALKYAHG-----GILVSGSTDR 74

Query: 236 TVVIWTCAKEGEQWEGRVLKDFKTPVWSVSWSLTGNLLAVADANNVTLWK 285
           TV +W   K                +  V +     ++  +  N + +WK
Sbjct: 75  TVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWK 124

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 360

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

 Score = 49.5 bits (116), Expect = 2e-07
 Identities = 20/294 (6%), Positives = 56/294 (19%), Gaps = 19/294 (6%)

Query: 6   IETGHEDTVHDVAMDFYGKRLATASSDSSIKIIGLSNSASQHLATLKGHRGPVWQVAWAH 65
           ++      +  V      K      +      +G+ +  +      + + G V+ +    
Sbjct: 37  LKVPEPLRIRYVRRGGDTKVAFIHGTREG-DFLGIYDYRTGKAEKFEENLGNVFAMGVDR 95

Query: 66  PKFGSILASCSYDGQVIIWKEGNQNDWTQAHTFNDHKSSVNSIAWAPHELGLSLACGSSD 125
                                 +             ++ +     + +   ++       
Sbjct: 96  NGKF-----AVVANDRFEIMTVDLETGKPTVIERSREAMITDFTISDNSRFIAYGFPLKH 150

Query: 126 GNISVFTATADGGWDTTRIDQAHPVGVTSVSWAPAMAPGALVGLGLLDPVQKLASCGCDN 185
           G    +   A   +D             S  +APA               + L      +
Sbjct: 151 GETDGYVMQAIHVYDMEGRKIFAATTENSHDYAPAFDA----------DSKNLYYLSYRS 200

Query: 186 TVKVWKMYNG---IWKMDCFPALQMHSDWVRSVAWAPNLGLPKSTIASASQDGTVVIWTC 242
                           +     + +           P     ++     +          
Sbjct: 201 LDPSPDRVVLNFSFEVVSKPFVIPLIPGSPNPTKLVPRSMTSEAGEYDLNDMYKRSSPIN 260

Query: 243 AKEGEQWEGRVLKDFKTPVWSVSWSLTGNLLAVADANNVTLWKEAVDGEWQQVS 296
              G+      L+                    A    V L  +    +  +V 
Sbjct: 261 VDPGDYRMIIPLESSILIYSVPVHGEFAAYYQGAPEKGVLLKYDVKTRKVTEVK 314

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 360

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

 Score = 48.7 bits (114), Expect = 3e-07
 Identities = 13/188 (6%), Positives = 39/188 (20%), Gaps = 28/188 (14%)

Query: 65  HPKFGSILASCSYDGQVIIW----KEGNQNDWTQAHTFNDHKSSVNSIAWAPHELGLSLA 120
                  L   SY              +    ++         S N     P  +     
Sbjct: 186 FDADSKNLYYLSYRSLDPSPDRVVLNFSFEVVSKPFVIPLIPGSPNPTKLVPRSMTSEAG 245

Query: 121 CGSSDGNISVFTATADGGWDTTRIDQAHPVGVTSVSWAPAMAPGALVGLGLLDPVQKLAS 180
               +  +   ++  +      R+       +   S        A               
Sbjct: 246 EYDLND-MYKRSSPINVDPGDYRMIIPLESSILIYSVPVHGEFAAY-----------YQG 293

Query: 181 CGCDNTVKVWKMYNGIWKMDCFPALQMHSDWVRSVAWAPNLGLPKSTIASASQDGTVVIW 240
                 +  + +            +    + +  +  + +    + T+     DG +  +
Sbjct: 294 APEKGVLLKYDVKTR--------KVTEVKNNLTDLRLSAD----RKTVMVRKDDGKIYTF 341

Query: 241 TCAKEGEQ 248
              K  ++
Sbjct: 342 PLEKPEDE 349

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 360

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

 Score = 42.5 bits (98), Expect = 4e-05
 Identities = 22/237 (9%), Positives = 60/237 (25%), Gaps = 21/237 (8%)

Query: 51  LKGHRGPVWQVAWAHPKFGSILASCSYDGQVIIWKEGNQNDWTQAHTFNDHKSSVNSIAW 110
            +     +     +              G+   +     + +          ++ NS  +
Sbjct: 123 ERSREAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRKIFAATTENSHDY 182

Query: 111 APHEL--GLSLACGSSDGNISVFTATADGGWDTTRIDQAHPVGVTSVSWAPAMAPGALVG 168
           AP       +L   S                D   ++ +  V   S  +   + PG+   
Sbjct: 183 APAFDADSKNLYYLSYRSLDPS--------PDRVVLNFSFEVV--SKPFVIPLIPGSPNP 232

Query: 169 LGLLDPVQKLASCGCDNTVKVWKMYNGIWKMDCFPALQMHSDWVRSVAWAPNLGLPKSTI 228
             L+       +   D      +          +  +      +   +   + G   +  
Sbjct: 233 TKLVPRSMTSEAGEYDLNDMYKRSSPINVDPGDYRMIIPLESSILIYSVPVH-GEFAAYY 291

Query: 229 ASASQDGTVVIWTCAKEGEQWEGRVLKDFKTPVWSVSWSLTGNLLAVA-DANNVTLW 284
             A + G ++ +         + R + + K  +  +  S     + V  D   +  +
Sbjct: 292 QGAPEKGVLLKYD-------VKTRKVTEVKNNLTDLRLSADRKTVMVRKDDGKIYTF 341

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.0 bits (107), Expect = 2e-06
 Identities = 33/172 (19%), Positives = 53/172 (30%), Gaps = 37/172 (21%)

Query: 74  SCSYDGQVIIWKEGNQNDWTQAHTFNDHKSSVNSIAWAPHELGLSLACGSSDGNISVFTA 133
           S S D  + +W   N +      T N HK  +  + +    +      GSSD  I +   
Sbjct: 153 SASGDRTIKVW---NTSTCEFVRTLNGHKRGIACLQYRDRLV----VSGSSDNTIRL--- 202

Query: 134 TADGGWDTTRIDQAHPVGVTSVSWAPAMAPGALVGLGLLDPVQKLASCGCDNTVKVWKMY 193
                WD         +                         +++ S   D  +KVW + 
Sbjct: 203 -----WDIECGACLRVLEGHEELVRCIR-----------FDNKRIVSGAYDGKIKVWDLV 246

Query: 194 NGIWKMD-----CFPALQMHSDWVRSVAWAPNLGLPKSTIASASQDGTVVIW 240
             +         C   L  HS  V  + +          I S+S D T++IW
Sbjct: 247 AALDPRAPAGTLCLRTLVEHSGRVFRLQFDEF------QIVSSSHDDTILIW 292

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.0 bits (107), Expect = 2e-06
 Identities = 32/301 (10%), Positives = 85/301 (28%), Gaps = 34/301 (11%)

Query: 4   QKIETGHEDTVHDVAMDFYGKRLATASSDSSIKIIGLSNSASQHLATLKGHRGPVWQVAW 63
           Q+I    E +     + +  +++ +   D++IKI   +    +    L GH G V  + +
Sbjct: 6   QRIHCRSETSKGVYCLQYDDQKIVSGLRDNTIKIWDKNTL--ECKRILTGHTGSVLCLQY 63

Query: 64  AHPKFGSILASCSYDGQVIIWKEGNQNDWTQAHTFNDHKSSVNSIAWAPHELGLSL---- 119
                 +  +  +     +   E               + +   +     +  +++    
Sbjct: 64  DERVIITGSSDSTVRVWDVNTGEMLNTLIHHCEAVLHLRFNNGMMVTCSKDRSIAVWDMA 123

Query: 120 --ACGSSDGNISVFTATADGGWDTTRIDQAHPVGVTSVSWAPAMAPGALVGLGLLDPV-- 175
                +    +    A  +      +   +     T   W  +         G    +  
Sbjct: 124 SPTDITLRRVLVGHRAAVNVVDFDDKYIVSASGDRTIKVWNTSTCEFVRTLNGHKRGIAC 183

Query: 176 -----QKLASCGCDNTVKVWKMYNGIWKMDCFPALQMHSDWVRSVAWAPNLGLPKSTIAS 230
                + + S   DNT+++W +  G          ++                    I S
Sbjct: 184 LQYRDRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRFDNKR----------IVS 233

Query: 231 ASQDGTVVIWTCAKEGEQWEG------RVLKDFKTPVWSVSWSLTGNLLAVADA-NNVTL 283
            + DG + +W      +          R L +    V+ + +      +  +   + + +
Sbjct: 234 GAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQFD--EFQIVSSSHDDTILI 291

Query: 284 W 284
           W
Sbjct: 292 W 292

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 44.5 bits (103), Expect = 8e-06
 Identities = 32/265 (12%), Positives = 63/265 (23%), Gaps = 35/265 (13%)

Query: 4   QKIETGHEDTVHDVAMDFYGKRLATASSDSSIKIIGLSNSASQHLATLKGHRGPVWQVAW 63
            +I T H            G   A+     +++I   + +      T+    GPV  ++W
Sbjct: 51  TEIYTEHSHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQTTHILKTTIPVFSGPVKDISW 110

Query: 64  AHPKFGSILASCSYDGQVIIWKEGNQNDWTQAHTFNDHKSSVNSIAWAPHELGLSLACGS 123
                         +    ++                  +SV+     P  +       +
Sbjct: 111 DSESKRIAAVGEGRERFGHVFLFDTGTSNGNLTGQARAMNSVDFKPSRPFRIISGSDDNT 170

Query: 124 SDGNISVFTATADGGWDTTRIDQAHPVGVTSVSWAPAMAPGALVGLGLLDPV-------- 175
                           + T+   +         +A     G +V    +D          
Sbjct: 171 VAIFEGPPFKFKSTFGEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDD 230

Query: 176 --------------------QKLASCGCDNTVKVWKMYNGIWKMDCFPALQMHSDWVRSV 215
                                K+AS   D T+K+W +          P      D    +
Sbjct: 231 SLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATL-KVEKTIPVGTRIEDQQLGI 289

Query: 216 AWAPNLGLPKSTIASASQDGTVVIW 240
            W          + S S +G +   
Sbjct: 290 IWTKQ------ALVSISANGFINFV 308

>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]} Length = 426

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Pseudomonas aeruginosa [TaxId: 287]

 Score = 43.8 bits (102), Expect = 1e-05
 Identities = 38/283 (13%), Positives = 86/283 (30%), Gaps = 19/283 (6%)

Query: 4   QKIETGHEDTVHDVAMDFYGKRLATASSDSSIKIIGLSNSASQHLATLK---GHRGPVWQ 60
           + I+TG+   VH   M   G+ L     D+ I +I L       +A +K     R     
Sbjct: 56  KVIDTGYA--VHISRMSASGRYLLVIGRDARIDMIDLWAKEPTKVAEIKIGIEARSVESS 113

Query: 61  VAWAHPKFGSILASCSYDGQVIIWKEGNQNDWTQAHTFNDHKSSVNSIAWAPHELGLSLA 120
                 +    +A   +  Q  I    +          +    +V++  + P     ++ 
Sbjct: 114 KFK-GYEDRYTIAGAYWPPQFAIM---DGETLEPKQIVSTRGMTVDTQTYHPEPRVAAII 169

Query: 121 CGSSDGNISVFTATADGGWDTTRIDQAHPVGVTSVSWAPAMAPGALVGLGLLDPVQKLAS 180
             S +    +         +T ++   +   + +++     A   L   G  D   +   
Sbjct: 170 -ASHEHPEFIVNV-----KETGKVLLVNYKDIDNLTVTSIGAAPFLADGG-WDSSHRYFM 222

Query: 181 CGCDNTVKVWKMYNGIWKMDCFPALQMHSDWVRSVAWAPNLGLPKSTIASASQDGTVVIW 240
              +N+ KV  + +   ++     +       R   +      P  + +        +I 
Sbjct: 223 TAANNSNKVAVIDSKDRRLSALVDVGKTPHPGRGANFVHPKYGPVWSTSHLGDGSISLIG 282

Query: 241 TCAKEGEQWEGRVLKDFKTP---VWSVSWSLTGNLLAVADANN 280
           T  K   Q+  + + + +        +      + L V    N
Sbjct: 283 TDPKNHPQYAWKKVAELQGQGGGSLFIKTHPKSSHLYVDTTFN 325

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} Length = 346

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

 Score = 39.0 bits (89), Expect = 4e-04
 Identities = 12/243 (4%), Positives = 45/243 (18%), Gaps = 21/243 (8%)

Query: 9   GHEDTVHDVAMDFYGKRLATASSDSSI----------KIIGLSNSASQHLATLKGHRGPV 58
               +++  A+   GK +    + +            ++   S +       ++    P 
Sbjct: 86  EVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFPMPR 145

Query: 59  WQVAWAHPKFGSILASCSYDGQVIIWK-EGNQNDWTQAHTFNDHKSSVNSIAWAPHELGL 117
                     GS+  +     ++ +   +       +      + +      W       
Sbjct: 146 QVYLMRAADDGSLYVAGPDIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRH 205

Query: 118 SLACGSSDGNISVFTATADGGWDTTRIDQAHPVGVTSVSWAPAMAPGALVGLGLLDPVQK 177
             +   +                             + +   A                 
Sbjct: 206 EFSMLYTIARFKDDKQDPATADLLYGYLSVDLKTGKTHTQEFADLTELYFTGLRSPKDPN 265

Query: 178 LASCGCDNTVKVWKMYNGIWKMDCFPALQMHSDWVRSVAWAPNLGLPKSTIASASQDGTV 237
                  N +  + +                      VA+          +        +
Sbjct: 266 QIYGV-LNRLAKYDLKQRKLI-----KAANLDHTYYCVAFDKK----GDKLYLGGTFNDL 315

Query: 238 VIW 240
            ++
Sbjct: 316 AVF 318

>d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]} Length = 333

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Putative isomerase YbhE
family: Putative isomerase YbhE
domain: Putative isomerase YbhE
species: Escherichia coli [TaxId: 562]

 Score = 36.7 bits (83), Expect = 0.002
 Identities = 23/281 (8%), Positives = 65/281 (23%), Gaps = 12/281 (4%)

Query: 8   TGHEDTVHDVAMDFYGKRLATASSDSSIKIIGLSNSASQHLATLKGHRGPVWQVAWAHPK 67
                 V  + +    + L          +          L        P      +   
Sbjct: 33  VDVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESALPGSLTHISTDH 92

Query: 68  FGSILASCSYDGQVIIWKEGNQNDWTQAHTFNDHKSSVNSIAWAPHELGLSLACGSSDGN 127
            G  +   SY+   +                 +     +S   +P               
Sbjct: 93  QGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVEGLDGCHSANISPDN---------RTLW 143

Query: 128 ISVFTATADGGWDTTRIDQAHPVGVTSVSWAPAMAPGALVGLGLLDPVQKLASCGCDNTV 187
           +          +  +            V+      P  +V          +        V
Sbjct: 144 VPALKQDRICLFTVSDDGHLVAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNELNSSVDV 203

Query: 188 KVWKMYNGIWK-MDCFPALQMHSDWVRSVAWAPNLGLPKSTIASASQDGTVVIWTCAKEG 246
              K  +G  + +     +  +    R  A        +   A       + +++ +++G
Sbjct: 204 WELKDPHGNIECVQTLDMMPENFSDTRWAADIHITPDGRHLYACDRTASLITVFSVSEDG 263

Query: 247 EQWEGRVLKDFKTPVWSVSWSLTGNLLAVA--DANNVTLWK 285
                   +  +T     +   +G  L  A   ++++++++
Sbjct: 264 SVLSKEGFQPTETQPRGFNVDHSGKYLIAAGQKSHHISVYE 304

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 35.9 bits (81), Expect = 0.004
 Identities = 29/268 (10%), Positives = 64/268 (23%), Gaps = 15/268 (5%)

Query: 26  LATASSDSSIKIIGLSNSASQHLATLKGHRGPVWQVAWAHPKFGSILASCSYDGQVIIW- 84
           +   +    + +I     A   + T+            A P      A+ +    ++   
Sbjct: 4   ILAPARPDKLVVIDTEKMAVDKVITIADAGPTPMVPMVA-PGGRIAYATVNKSESLVKID 62

Query: 85  -KEGNQNDWTQAHTFNDHKSSVNSIAWAPHELGLSLACGSSDGNISVFTATADGGWD--- 140
              G         T  +   S+   A +P    L++        ++ F            
Sbjct: 63  LVTGETLGRIDLSTPEERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDA 122

Query: 141 ---TTRIDQAHPVGVTSVSWAPAMAPGALVGLGLLDPVQKLASCGCDNTVKVWKMYNGIW 197
              + R     P  +T ++WA       L GLG    V    +        +       +
Sbjct: 123 ETLSRRKAFEAPRQITMLAWARDG--SKLYGLGRDLHVMDPEAGTLVEDKPIQSWEAETY 180

Query: 198 K-MDCFPALQMHSDWVRSVAWAPNLGLPKSTIASASQDGTVVIWTCAKEGEQWEGRVLKD 256
              D       H                       +    ++         +   R ++ 
Sbjct: 181 AQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLET--GEMAMREVRI 238

Query: 257 FKTPVWSVSWSLTGNLLAVADANNVTLW 284
                +S + +        A  N +  +
Sbjct: 239 MDVFYFSTAVNPAKTRAFGAY-NVLESF 265

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	302
d1k8kc_	371	Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur	100.0
d1vyhc1	317	Platelet-activating factor acetylhydrolase IB subu	100.0
d1tbga_	340	beta1-subunit of the signal-transducing G protein	100.0
d1nr0a1	311	Actin interacting protein 1 {Nematode (Caenorhabdi	100.0
d1gxra_	337	Groucho/tle1, C-terminal domain {Human (Homo sapie	100.0
d1nr0a2	299	Actin interacting protein 1 {Nematode (Caenorhabdi	100.0
d1gxra_	337	Groucho/tle1, C-terminal domain {Human (Homo sapie	100.0
d1nr0a1	311	Actin interacting protein 1 {Nematode (Caenorhabdi	100.0
d1erja_	388	Tup1, C-terminal domain {Baker's yeast (Saccharomy	100.0
d1k8kc_	371	Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur	100.0
d2ovrb2	342	F-box/WD repeat-containing protein 7, FBXW7 {Human	100.0
d1erja_	388	Tup1, C-terminal domain {Baker's yeast (Saccharomy	100.0
d1pgua1	325	Actin interacting protein 1 {Baker's yeast (Saccha	100.0
d1nexb2	355	Cdc4 propeller domain {Baker's yeast (Saccharomyce	100.0
d1pgua1	325	Actin interacting protein 1 {Baker's yeast (Saccha	100.0
d1p22a2	293	F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom	100.0
d1pgua2	287	Actin interacting protein 1 {Baker's yeast (Saccha	99.98
d1nr0a2	299	Actin interacting protein 1 {Nematode (Caenorhabdi	99.97
d1sq9a_	393	Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac	99.97
d1yfqa_	342	Cell cycle arrest protein BUB3 {Baker's yeast (Sac	99.97
d1tbga_	340	beta1-subunit of the signal-transducing G protein	99.97
d1vyhc1	317	Platelet-activating factor acetylhydrolase IB subu	99.97
d1nexb2	355	Cdc4 propeller domain {Baker's yeast (Saccharomyce	99.96
d1sq9a_	393	Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac	99.95
d1k32a3	360	Tricorn protease domain 2 {Archaeon Thermoplasma a	99.93
d1yfqa_	342	Cell cycle arrest protein BUB3 {Baker's yeast (Sac	99.93
d1pgua2	287	Actin interacting protein 1 {Baker's yeast (Saccha	99.93
d2ovrb2	342	F-box/WD repeat-containing protein 7, FBXW7 {Human	99.92
d1p22a2	293	F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom	99.92
d1hzua2	426	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.89
d1qksa2	432	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.87
d1k32a3	360	Tricorn protease domain 2 {Archaeon Thermoplasma a	99.87
d1ri6a_	333	Putative isomerase YbhE {Escherichia coli [TaxId:	99.84
d1l0qa2	301	Surface layer protein {Archaeon Methanosarcina maz	99.82
d1pbyb_	337	Quinohemoprotein amine dehydrogenase B chain {Para	99.81
d1jmxb_	346	Quinohemoprotein amine dehydrogenase B chain {Pseu	99.79
d1hzua2	426	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.79
d1qksa2	432	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.75
d1l0qa2	301	Surface layer protein {Archaeon Methanosarcina maz	99.69
d2madh_	373	Methylamine dehydrogenase, H-chain {Gram negative	99.66
d1pbyb_	337	Quinohemoprotein amine dehydrogenase B chain {Para	99.65
d2bbkh_	355	Methylamine dehydrogenase, H-chain {Paracoccus den	99.59
d1ri6a_	333	Putative isomerase YbhE {Escherichia coli [TaxId:	99.55
d1jmxb_	346	Quinohemoprotein amine dehydrogenase B chain {Pseu	99.42
d2madh_	373	Methylamine dehydrogenase, H-chain {Gram negative	99.41
d2bgra1	470	Dipeptidyl peptidase IV/CD26, N-terminal domain {P	99.35
d2bbkh_	355	Methylamine dehydrogenase, H-chain {Paracoccus den	99.32
d1mdah_	368	Methylamine dehydrogenase, H-chain {Paracoccus den	99.23
d2bgra1	470	Dipeptidyl peptidase IV/CD26, N-terminal domain {P	99.11
d1jofa_	365	3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu	99.09
d2p4oa1	302	Hypothetical protein All0351 homologue {Nostoc pun	99.02
d2hqsa1	269	TolB, C-terminal domain {Escherichia coli [TaxId:	98.91
d1qnia2	441	Nitrous oxide reductase, N-terminal domain {Pseudo	98.87
d1q7fa_	279	Brain tumor cg10719-pa {Fruit fly (Drosophila mela	98.83
d2hqsa1	269	TolB, C-terminal domain {Escherichia coli [TaxId:	98.78
d1mdah_	368	Methylamine dehydrogenase, H-chain {Paracoccus den	98.77
d2p4oa1	302	Hypothetical protein All0351 homologue {Nostoc pun	98.7
d1rwia_	260	Serine/threonine-protein kinase PknD {Mycobacteriu	98.67
d1jofa_	365	3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu	98.65
d1qnia2	441	Nitrous oxide reductase, N-terminal domain {Pseudo	98.63
d1pjxa_	314	Diisopropylfluorophosphatase (phosphotriesterase,	98.51
d1pjxa_	314	Diisopropylfluorophosphatase (phosphotriesterase,	98.23
d2dg1a1	319	Lactonase Drp35 {Staphylococcus aureus [TaxId: 128	97.95
d1rwia_	260	Serine/threonine-protein kinase PknD {Mycobacteriu	97.86
d1xfda1	465	Dipeptidyl aminopeptidase-like protein 6, DPP6, N-	97.84
d1xfda1	465	Dipeptidyl aminopeptidase-like protein 6, DPP6, N-	97.77
d1k32a2	281	Tricorn protease N-terminal domain {Archaeon Therm	97.35
d2dg1a1	319	Lactonase Drp35 {Staphylococcus aureus [TaxId: 128	97.34
d1k3ia3	387	Galactose oxidase, central domain {Fungi (Fusarium	96.97
d1q7fa_	279	Brain tumor cg10719-pa {Fruit fly (Drosophila mela	96.85
d2ghsa1	295	Regucalcin {Agrobacterium tumefaciens [TaxId: 358]	96.41
d1k3ia3	387	Galactose oxidase, central domain {Fungi (Fusarium	94.77
d1k32a2	281	Tricorn protease N-terminal domain {Archaeon Therm	94.75
d2ghsa1	295	Regucalcin {Agrobacterium tumefaciens [TaxId: 358]	94.25
d1v04a_	340	Serum paraoxonase/arylesterase 1, PON1 {Rabit (Ory	87.26
d1utca2	327	Clathrin heavy-chain terminal domain {Rat (Rattus	84.71
d1npea_	263	Nidogen {Mouse (Mus musculus) [TaxId: 10090]}	81.94
d1crua_	450	Soluble quinoprotein glucose dehydrogenase {Acinet	81.4
d1v04a_	340	Serum paraoxonase/arylesterase 1, PON1 {Rabit (Ory	81.09

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=5.2e-38  Score=275.73  Aligned_cols=260  Identities=20%  Similarity=0.325  Sum_probs=209.2

Q ss_pred             ccceeEEEEccCCCEEEEeeCCCcEEEEeecCCCceEEEEecCcccCeEEEEeeCCCCCCEEEEEeCCCeEEEEEcCCCC
Q 022111           11 EDTVHDVAMDFYGKRLATASSDSSIKIIGLSNSASQHLATLKGHRGPVWQVAWAHPKFGSILASCSYDGQVIIWKEGNQN   90 (302)
Q Consensus        11 ~~~v~~~~~s~~~~~l~s~~~d~~v~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~s~D~~i~iwd~~~~~   90 (302)
                      .++|++++|+||+++||+|+.|+.|+||+...+....+..+.+|.++|++|+|+|+  +++|++|+.|++|++||+.+. 
T Consensus         7 ~~pIt~~~~s~dg~~la~~~~~~~i~iw~~~~~~~~~~~~l~gH~~~V~~l~fsp~--~~~l~s~s~D~~i~vWd~~~~-   83 (371)
T d1k8kc_           7 VEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPD--SNRIVTCGTDRNAYVWTLKGR-   83 (371)
T ss_dssp             SSCCCEEEECTTSSEEEEECSSSEEEEEEEETTEEEEEEEEECCSSCEEEEEEETT--TTEEEEEETTSCEEEEEEETT-
T ss_pred             CCCeEEEEECCCCCEEEEEeCCCEEEEEECCCCCEEEEEEecCCCCCEEEEEECCC--CCEEEEEECCCeEEEEeeccc-
Confidence            47899999999999999999999999999976655677889999999999999874  789999999999999999764 


Q ss_pred             ceeEEEEecCCCCCeeEEEecCCCCCcEEEEEecCCcEEEEEecCCCCeee-eeecccCCCCeEEEEeCCCCCCCceeec
Q 022111           91 DWTQAHTFNDHKSSVNSIAWAPHELGLSLACGSSDGNISVFTATADGGWDT-TRIDQAHPVGVTSVSWAPAMAPGALVGL  169 (302)
Q Consensus        91 ~~~~~~~~~~h~~~i~~l~~~pd~~~~~l~sg~~d~~v~~~~~~~~~~~~~-~~~~~~h~~~v~~~~~~~~~~~~~~~~~  169 (302)
                      .+.+...+.+|...|.+++|+|+  +..|++|+.|+.+++|+......... ......|...|.+++|+|++        
T Consensus        84 ~~~~~~~~~~~~~~v~~i~~~p~--~~~l~~~s~d~~i~i~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~--------  153 (371)
T d1k8kc_          84 TWKPTLVILRINRAARCVRWAPN--EKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNS--------  153 (371)
T ss_dssp             EEEEEEECCCCSSCEEEEEECTT--SSEEEEEETTSSEEEEEEETTTTEEEEEEECTTCCSCEEEEEECTTS--------
T ss_pred             ccccccccccccccccccccccc--cccceeecccCcceeeeeecccccccccccccccccccccccccccc--------
Confidence            34455667789999999999998  66999999999999999876544322 33344688899999999863        


Q ss_pred             ccCCCceeEEEeeCCCcEEEEEEecCccc--------------cccccccccCCCceeEEEeeCCCCCCccEEEEEecCC
Q 022111          170 GLLDPVQKLASCGCDNTVKVWKMYNGIWK--------------MDCFPALQMHSDWVRSVAWAPNLGLPKSTIASASQDG  235 (302)
Q Consensus       170 ~~~~~~~~l~s~~~D~~v~iwd~~~~~~~--------------~~~~~~~~~h~~~v~~v~~~p~~~~~~~~l~s~s~D~  235 (302)
                            .+|++|+.|++|++||+......              ........+|...|.+++|+|++    +.|++++.|+
T Consensus       154 ------~~l~s~s~D~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g----~~l~s~~~d~  223 (371)
T d1k8kc_         154 ------VLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANG----SRVAWVSHDS  223 (371)
T ss_dssp             ------SEEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSS----SEEEEEETTT
T ss_pred             ------cceeccccCcEEEEEeeccCccccccccccccccccceeeeeeccCccCcEEEEEeeccc----ccccccccCC
Confidence                  78999999999999998643211              11233456899999999999985    7899999999


Q ss_pred             eEEEEEeccCCcceeeeeeccCCCcEEEEEEccCCCEEEEecCCceEEeee-cCCceEEEee
Q 022111          236 TVVIWTCAKEGEQWEGRVLKDFKTPVWSVSWSLTGNLLAVADANNVTLWKE-AVDGEWQQVS  296 (302)
Q Consensus       236 ~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~la~~~~d~i~~w~~-~~~~~~~~~~  296 (302)
                      .|++||+.....   ...+..+..+|.+++|+|||++|++|.++.+++|.. ...+.+....
T Consensus       224 ~i~iwd~~~~~~---~~~~~~~~~~v~s~~fs~d~~~la~g~d~~~~~~~~~~~~~~~~~~~  282 (371)
T d1k8kc_         224 TVCLADADKKMA---VATLASETLPLLAVTFITESSLVAAGHDCFPVLFTYDSAAGKLSFGG  282 (371)
T ss_dssp             EEEEEEGGGTTE---EEEEECSSCCEEEEEEEETTEEEEEETTSSCEEEEEETTTTEEEECC
T ss_pred             cceEEeeecccc---eeeeecccccceeeeecCCCCEEEEEcCCceEEEEeeCCCceEEEee
Confidence            999999976432   223456778999999999999999887667777664 2344455443

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=3.5e-38  Score=266.85  Aligned_cols=263  Identities=24%  Similarity=0.386  Sum_probs=208.2

Q ss_pred             CCcccccccccceeEEEEccCCCEEEEeeCCCcEEEEeecCCCceEEEEecCcccCeEEEEeeCC---------------
Q 022111            2 PAQKIETGHEDTVHDVAMDFYGKRLATASSDSSIKIIGLSNSASQHLATLKGHRGPVWQVAWAHP---------------   66 (302)
Q Consensus         2 ~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~---------------   66 (302)
                      |.+.++.||+++|++++|+|++++||||+.|++|+|||+...  +.+.++.+|...|.+++|+++               
T Consensus         8 ~~~~~L~GH~~~I~~l~~sp~~~~l~s~s~Dg~i~iWd~~~~--~~~~~~~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~   85 (317)
T d1vyhc1           8 PEKYALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETG--DFERTLKGHTDSVQDISFDHSGKLLASCSADMTIKL   85 (317)
T ss_dssp             SCSCEEECCSSCEEEEEECSSSSEEEEEESSSCEEEEETTTC--CCCEEECCCSSCEEEEEECTTSSEEEEEETTSCCCE
T ss_pred             CccEEEcCCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCC--CEEEEEeCCCCcEEEEeeeccccccccccccccccc
Confidence            345567899999999999999999999999999999998653  455667778888877777542               


Q ss_pred             -------------------------CCCCEEEEEeCCCeEEEEEcCCCCceeEEEEecCCCCCeeEEEecCCCCCcEEEE
Q 022111           67 -------------------------KFGSILASCSYDGQVIIWKEGNQNDWTQAHTFNDHKSSVNSIAWAPHELGLSLAC  121 (302)
Q Consensus        67 -------------------------~~~~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~h~~~i~~l~~~pd~~~~~l~s  121 (302)
                                               .+++.+++++.|+.+++||+++..   ....+..|...+.+++|+|+  +.+|++
T Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~--~~~l~~  160 (317)
T d1vyhc1          86 WDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGY---CVKTFTGHREWVRMVRPNQD--GTLIAS  160 (317)
T ss_dssp             EETTSSCEEECCCCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCC---EEEEEECCSSCEEEEEECTT--SSEEEE
T ss_pred             ccccccccccccccccccceeeeccCCCceEEeeccCcceeEeecccce---eeeEEccCCCcceeeecccC--CCEEEE
Confidence                                     024567888889999999987653   56677889999999999998  669999


Q ss_pred             EecCCcEEEEEecCCCCeeeeeecccCCCCeEEEEeCCCCCCCcee------ecccCCCceeEEEeeCCCcEEEEEEecC
Q 022111          122 GSSDGNISVFTATADGGWDTTRIDQAHPVGVTSVSWAPAMAPGALV------GLGLLDPVQKLASCGCDNTVKVWKMYNG  195 (302)
Q Consensus       122 g~~d~~v~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~------~~~~~~~~~~l~s~~~D~~v~iwd~~~~  195 (302)
                      ++.|+.|++|+......  ...+. .|...+.++.|+|........      ......++..+++++.|+.|++||+.++
T Consensus       161 ~~~d~~v~~~~~~~~~~--~~~~~-~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~  237 (317)
T d1vyhc1         161 CSNDQTVRVWVVATKEC--KAELR-EHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTG  237 (317)
T ss_dssp             EETTSCEEEEETTTCCE--EEEEC-CCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEEEEETTTT
T ss_pred             EeCCCeEEEEeecccee--eEEEe-cCCCCceEEEEeeccccceeeccccceeeeeccCCceeEeccCCCEEEEEECCCC
Confidence            99999999999875432  23333 678889999999865322111      1112234678999999999999999876


Q ss_pred             ccccccccccccCCCceeEEEeeCCCCCCccEEEEEecCCeEEEEEeccCCcceeeeeeccCCCcEEEEEEccCCCEEEE
Q 022111          196 IWKMDCFPALQMHSDWVRSVAWAPNLGLPKSTIASASQDGTVVIWTCAKEGEQWEGRVLKDFKTPVWSVSWSLTGNLLAV  275 (302)
Q Consensus       196 ~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~la~  275 (302)
                          .++..+.+|...|.+++|+|++    ++|++|+.||.|+|||++....   ...+..|..+|.+++|+|++++|++
T Consensus       238 ----~~~~~~~~~~~~v~~~~~~~~~----~~l~s~~~dg~i~iwd~~~~~~---~~~~~~h~~~V~~~~~s~~~~~l~s  306 (317)
T d1vyhc1         238 ----MCLMTLVGHDNWVRGVLFHSGG----KFILSCADDKTLRVWDYKNKRC---MKTLNAHEHFVTSLDFHKTAPYVVT  306 (317)
T ss_dssp             ----EEEEEEECCSSCEEEEEECSSS----SCEEEEETTTEEEEECCTTSCC---CEEEECCSSCEEEEEECSSSSCEEE
T ss_pred             ----cEEEEEeCCCCCEEEEEECCCC----CEEEEEECCCeEEEEECCCCcE---EEEEcCCCCCEEEEEEcCCCCEEEE
Confidence                4556788999999999999985    7799999999999999976432   2344678889999999999999999


Q ss_pred             ecCC-ceEEee
Q 022111          276 ADAN-NVTLWK  285 (302)
Q Consensus       276 ~~~d-~i~~w~  285 (302)
                      |+.| .|+|||
T Consensus       307 ~s~Dg~i~iWd  317 (317)
T d1vyhc1         307 GSVDQTVKVWE  317 (317)
T ss_dssp             EETTSEEEEEC
T ss_pred             EeCCCeEEEeC
Confidence            9998 799997

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=1.8e-36  Score=259.84  Aligned_cols=252  Identities=16%  Similarity=0.216  Sum_probs=200.6

Q ss_pred             CCcccccccccceeEEEEccCCCEEEEeeCCCcEEEEeecCCCceEEEEecCcccCeEEEEeeCCCCCCEEEEEeCCCeE
Q 022111            2 PAQKIETGHEDTVHDVAMDFYGKRLATASSDSSIKIIGLSNSASQHLATLKGHRGPVWQVAWAHPKFGSILASCSYDGQV   81 (302)
Q Consensus         2 ~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~s~D~~i   81 (302)
                      ..++++.||++.|++++|+|++++||||+.||+|+|||+..  .+.+..+.+|...|.+++|+++  ++++++|+.|+.+
T Consensus        46 ~~~~tL~GH~~~I~~l~~s~~~~~l~sgs~Dg~v~iWd~~~--~~~~~~~~~~~~~v~~v~~~~~--~~~l~~~~~d~~i  121 (340)
T d1tbga_          46 RTRRTLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYT--TNKVHAIPLRSSWVMTCAYAPS--GNYVACGGLDNIC  121 (340)
T ss_dssp             CEEEEECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTT--TEEEEEEECSCSCEEEEEECTT--SSEEEEEETTCCE
T ss_pred             eeeEEECCCCCCEEEEEECCCCCEEEEEECCCceeeeeccc--ceeEEEEecccccEEeeEeecc--ceeeeeeccccee
Confidence            34567889999999999999999999999999999999865  4567788899999999999864  7899999999999


Q ss_pred             EEEEcCCCCc-ee-----------------------------------------EEEEecCCCCCeeEEEecCCCCCcEE
Q 022111           82 IIWKEGNQND-WT-----------------------------------------QAHTFNDHKSSVNSIAWAPHELGLSL  119 (302)
Q Consensus        82 ~iwd~~~~~~-~~-----------------------------------------~~~~~~~h~~~i~~l~~~pd~~~~~l  119 (302)
                      ++|+...... ..                                         .......+...+....+.+.  ...+
T Consensus       122 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~  199 (340)
T d1tbga_         122 SIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPD--TRLF  199 (340)
T ss_dssp             EEEESSSSCSCCCEEEEECCCSSCEEEEEEEETTEEEEEETTTEEEEEETTTTEEEEEEECCSSCEEEEEECTT--SSEE
T ss_pred             ecccccccccccccceecccccccccccccccccccccccccccccccccccccccccccccceeEeeeccccc--ccee
Confidence            9998643211 00                                         01112235566777777776  5589


Q ss_pred             EEEecCCcEEEEEecCCCCeeeeeecccCCCCeEEEEeCCCCCCCceeecccCCCceeEEEeeCCCcEEEEEEecCcccc
Q 022111          120 ACGSSDGNISVFTATADGGWDTTRIDQAHPVGVTSVSWAPAMAPGALVGLGLLDPVQKLASCGCDNTVKVWKMYNGIWKM  199 (302)
Q Consensus       120 ~sg~~d~~v~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~D~~v~iwd~~~~~~~~  199 (302)
                      ++|+.|+.|++||+++..  ....+. +|...|++++|+|++              ..|++|+.|+.|++||++......
T Consensus       200 ~~~~~d~~v~i~d~~~~~--~~~~~~-~h~~~i~~v~~~p~~--------------~~l~s~s~d~~i~~~~~~~~~~~~  262 (340)
T d1tbga_         200 VSGACDASAKLWDVREGM--CRQTFT-GHESDINAICFFPNG--------------NAFATGSDDATCRLFDLRADQELM  262 (340)
T ss_dssp             EEEETTTEEEEEETTTTE--EEEEEC-CCSSCEEEEEECTTS--------------SEEEEEETTSCEEEEETTTTEEEE
T ss_pred             EEeecCceEEEEECCCCc--EEEEEe-CCCCCeEEEEECCCC--------------CEEEEEeCCCeEEEEeeccccccc
Confidence            999999999999987542  223443 788999999999863              789999999999999987653211


Q ss_pred             ccccccccCCCceeEEEeeCCCCCCccEEEEEecCCeEEEEEeccCCcceeeeeeccCCCcEEEEEEccCCCEEEEecCC
Q 022111          200 DCFPALQMHSDWVRSVAWAPNLGLPKSTIASASQDGTVVIWTCAKEGEQWEGRVLKDFKTPVWSVSWSLTGNLLAVADAN  279 (302)
Q Consensus       200 ~~~~~~~~h~~~v~~v~~~p~~~~~~~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~la~~~~d  279 (302)
                        ......|...|.+++|+|++    .+|++|+.||.|++||+.....   ...+.+|..+|.+++|+|+|++|++|+.|
T Consensus       263 --~~~~~~~~~~i~~~~~s~~~----~~l~~g~~dg~i~iwd~~~~~~---~~~~~~H~~~V~~l~~s~d~~~l~s~s~D  333 (340)
T d1tbga_         263 --TYSHDNIICGITSVSFSKSG----RLLLAGYDDFNCNVWDALKADR---AGVLAGHDNRVSCLGVTDDGMAVATGSWD  333 (340)
T ss_dssp             --EECCTTCCSCEEEEEECSSS----CEEEEEETTSCEEEEETTTCCE---EEEECCCSSCEEEEEECTTSSCEEEEETT
T ss_pred             --ccccccccCceEEEEECCCC----CEEEEEECCCEEEEEECCCCcE---EEEEcCCCCCEEEEEEeCCCCEEEEEccC
Confidence              12234577889999999985    7899999999999999875431   23446788899999999999999999988


Q ss_pred             -ceEEee
Q 022111          280 -NVTLWK  285 (302)
Q Consensus       280 -~i~~w~  285 (302)
                       .|++|+
T Consensus       334 g~v~iWd  340 (340)
T d1tbga_         334 SFLKIWN  340 (340)
T ss_dssp             SCEEEEC
T ss_pred             CEEEEeC
Confidence             799996

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=100.00  E-value=1.3e-36  Score=260.95  Aligned_cols=251  Identities=20%  Similarity=0.270  Sum_probs=195.0

Q ss_pred             ccccccccceeEEEEccCCCEEEEeeCCCcEEEEeecCCCceEEEEecCcccCeEEEEeeCCCCCCEEEEEeC--CCeEE
Q 022111            5 KIETGHEDTVHDVAMDFYGKRLATASSDSSIKIIGLSNSASQHLATLKGHRGPVWQVAWAHPKFGSILASCSY--DGQVI   82 (302)
Q Consensus         5 ~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~s~--D~~i~   82 (302)
                      +++.+|++.|++++|+|+|++||+|+.|++|+||++..........+.+|.+.|.+++|+++  +++|++++.  ++.++
T Consensus        52 ~~~~~H~~~v~~~~~sp~g~~latg~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~d--~~~l~~~~~~~~~~~~  129 (311)
T d1nr0a1          52 EIYTEHSHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQTTHILKTTIPVFSGPVKDISWDSE--SKRIAAVGEGRERFGH  129 (311)
T ss_dssp             EEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEESSSTTCCEEEEEECSSSCEEEEEECTT--SCEEEEEECCSSCSEE
T ss_pred             EEEcCCCCCEEEEEEeCCCCeEeccccCceEeeeeeeccccccccccccccCcccccccccc--cccccccccccccccc
Confidence            45679999999999999999999999999999999976554444568899999999999864  788888875  56699


Q ss_pred             EEEcCCCCceeEEEEecCCCCCeeEEEecCCCCCcEEEEEecCCcEEEEEecCCCCeeeeeecccCCCCeEEEEeCCCCC
Q 022111           83 IWKEGNQNDWTQAHTFNDHKSSVNSIAWAPHELGLSLACGSSDGNISVFTATADGGWDTTRIDQAHPVGVTSVSWAPAMA  162 (302)
Q Consensus        83 iwd~~~~~~~~~~~~~~~h~~~i~~l~~~pd~~~~~l~sg~~d~~v~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~  162 (302)
                      +|+++...   ...++.+|.+.|.+++|+|+. ...+++|+.|+.|++||++..   ........|...|+++.|+|++ 
T Consensus       130 v~~~~~~~---~~~~l~~h~~~v~~v~~~~~~-~~~l~sgs~d~~i~i~d~~~~---~~~~~~~~~~~~i~~v~~~p~~-  201 (311)
T d1nr0a1         130 VFLFDTGT---SNGNLTGQARAMNSVDFKPSR-PFRIISGSDDNTVAIFEGPPF---KFKSTFGEHTKFVHSVRYNPDG-  201 (311)
T ss_dssp             EEETTTCC---BCBCCCCCSSCEEEEEECSSS-SCEEEEEETTSCEEEEETTTB---EEEEEECCCSSCEEEEEECTTS-
T ss_pred             cccccccc---ccccccccccccccccccccc-eeeeccccccccccccccccc---ccccccccccccccccccCccc-
Confidence            99987653   456788899999999999984 246899999999999998743   2222234788999999999864 


Q ss_pred             CCceeecccCCCceeEEEeeCCCcEEEEEEecCccccc--c-ccccccCCCceeEEEeeCCCCCCccEEEEEecCCeEEE
Q 022111          163 PGALVGLGLLDPVQKLASCGCDNTVKVWKMYNGIWKMD--C-FPALQMHSDWVRSVAWAPNLGLPKSTIASASQDGTVVI  239 (302)
Q Consensus       163 ~~~~~~~~~~~~~~~l~s~~~D~~v~iwd~~~~~~~~~--~-~~~~~~h~~~v~~v~~~p~~~~~~~~l~s~s~D~~i~i  239 (302)
                                   .+|++++.|+.|++||+.++.....  . .....+|.+.|++++|+|++    ++|++|+.|++|+|
T Consensus       202 -------------~~l~~~~~d~~v~~~d~~~~~~~~~~~~~~~~~~~h~~~V~~~~~s~~~----~~l~tgs~Dg~v~i  264 (311)
T d1nr0a1         202 -------------SLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDG----TKIASASADKTIKI  264 (311)
T ss_dssp             -------------SEEEEEETTSCEEEEETTTCCEEEECBCTTSSSCSSSSCEEEEEECTTS----SEEEEEETTSEEEE
T ss_pred             -------------cccccccccccccccccccccccccccccccccccccccccccccCCCC----CEEEEEeCCCeEEE
Confidence                         7899999999999999876532111  1 12345799999999999985    78999999999999


Q ss_pred             EEeccCCcceeeeeecc--CCCcEEEEEEccCCCEEEEecCC-ceEEeee
Q 022111          240 WTCAKEGEQWEGRVLKD--FKTPVWSVSWSLTGNLLAVADAN-NVTLWKE  286 (302)
Q Consensus       240 wd~~~~~~~~~~~~~~~--~~~~v~~~~~spdg~~la~~~~d-~i~~w~~  286 (302)
                      ||+++...  ...+...  ....+.++.|  ++++|++++.| .|++|+.
T Consensus       265 wd~~t~~~--~~~l~~~~~~~~~~~~~~~--~~~~l~s~s~dG~i~~wd~  310 (311)
T d1nr0a1         265 WNVATLKV--EKTIPVGTRIEDQQLGIIW--TKQALVSISANGFINFVNP  310 (311)
T ss_dssp             EETTTTEE--EEEEECCSSGGGCEEEEEE--CSSCEEEEETTCCEEEEET
T ss_pred             EECCCCcE--EEEEECCCCccceEEEEEe--cCCEEEEEECCCEEEEEeC
Confidence            99875421  1112111  2234555555  45578888777 7999985

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=5.9e-36  Score=258.95  Aligned_cols=242  Identities=17%  Similarity=0.228  Sum_probs=202.8

Q ss_pred             ccccccceeEEEEccCCCEEEEeeCCCcEEEEeecCCCceEEEEecCcccCeEEEEeeCCCCCCEEEEEeCCCeEEEEEc
Q 022111            7 ETGHEDTVHDVAMDFYGKRLATASSDSSIKIIGLSNSASQHLATLKGHRGPVWQVAWAHPKFGSILASCSYDGQVIIWKE   86 (302)
Q Consensus         7 ~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~s~D~~i~iwd~   86 (302)
                      ..+|++.|.+++|+|++++|++|+.|++|++||+.....+....+.+|...|..++|+++  +.++++++.|+.+++|++
T Consensus        93 ~~~h~~~I~~v~~s~dg~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~--~~~l~s~~~d~~i~~~~~  170 (337)
T d1gxra_          93 CLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPD--SKVCFSCCSDGNIAVWDL  170 (337)
T ss_dssp             CSCTTSBEEEEEECTTSSEEEEEESSSEEEEEECCCC--EEEEEEECSSSCEEEEEECTT--SSEEEEEETTSCEEEEET
T ss_pred             ecCCCCcEEEEEEcCCCCEEEEeecccccccccccccccccccccccccccccccccccc--cccccccccccccccccc
Confidence            347999999999999999999999999999999876555666778899999999999764  789999999999999999


Q ss_pred             CCCCceeEEEEecCCCCCeeEEEecCCCCCcEEEEEecCCcEEEEEecCCCCeeeeeecccCCCCeEEEEeCCCCCCCce
Q 022111           87 GNQNDWTQAHTFNDHKSSVNSIAWAPHELGLSLACGSSDGNISVFTATADGGWDTTRIDQAHPVGVTSVSWAPAMAPGAL  166 (302)
Q Consensus        87 ~~~~~~~~~~~~~~h~~~i~~l~~~pd~~~~~l~sg~~d~~v~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~  166 (302)
                      .+.   ........|...|.+++|+|+  +..+++|+.|+.+++||+++...  ....  .|...|.+++|+|++     
T Consensus       171 ~~~---~~~~~~~~~~~~v~~l~~s~~--~~~~~~~~~d~~v~i~d~~~~~~--~~~~--~~~~~i~~l~~~~~~-----  236 (337)
T d1gxra_         171 HNQ---TLVRQFQGHTDGASCIDISND--GTKLWTGGLDNTVRSWDLREGRQ--LQQH--DFTSQIFSLGYCPTG-----  236 (337)
T ss_dssp             TTT---EEEEEECCCSSCEEEEEECTT--SSEEEEEETTSEEEEEETTTTEE--EEEE--ECSSCEEEEEECTTS-----
T ss_pred             ccc---ccccccccccccccccccccc--cccccccccccccccccccccee--eccc--ccccceEEEEEcccc-----
Confidence            765   355667789999999999998  66899999999999999875422  2222  577889999999863     


Q ss_pred             eecccCCCceeEEEeeCCCcEEEEEEecCccccccccccccCCCceeEEEeeCCCCCCccEEEEEecCCeEEEEEeccCC
Q 022111          167 VGLGLLDPVQKLASCGCDNTVKVWKMYNGIWKMDCFPALQMHSDWVRSVAWAPNLGLPKSTIASASQDGTVVIWTCAKEG  246 (302)
Q Consensus       167 ~~~~~~~~~~~l~s~~~D~~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~l~s~s~D~~i~iwd~~~~~  246 (302)
                               ..|++++.|+.+++||++++.     ......|.+.|++++|+|++    ++|++++.|+.|++||+....
T Consensus       237 ---------~~l~~~~~d~~i~i~d~~~~~-----~~~~~~~~~~i~~v~~s~~g----~~l~s~s~Dg~i~iwd~~~~~  298 (337)
T d1gxra_         237 ---------EWLAVGMESSNVEVLHVNKPD-----KYQLHLHESCVLSLKFAYCG----KWFVSTGKDNLLNAWRTPYGA  298 (337)
T ss_dssp             ---------SEEEEEETTSCEEEEETTSSC-----EEEECCCSSCEEEEEECTTS----SEEEEEETTSEEEEEETTTCC
T ss_pred             ---------cccceeccccccccccccccc-----cccccccccccceEEECCCC----CEEEEEeCCCeEEEEECCCCC
Confidence                     789999999999999998653     12456799999999999985    789999999999999987643


Q ss_pred             cceeeeeeccCCCcEEEEEEccCCCEEEEecCC-ceEEeee
Q 022111          247 EQWEGRVLKDFKTPVWSVSWSLTGNLLAVADAN-NVTLWKE  286 (302)
Q Consensus       247 ~~~~~~~~~~~~~~v~~~~~spdg~~la~~~~d-~i~~w~~  286 (302)
                      .    .....+..+|.+++|+|+|++|++|+.| .|+|||.
T Consensus       299 ~----~~~~~~~~~v~~~~~s~d~~~l~t~s~D~~I~vWdl  335 (337)
T d1gxra_         299 S----IFQSKESSSVLSCDISVDDKYIVTGSGDKKATVYEV  335 (337)
T ss_dssp             E----EEEEECSSCEEEEEECTTSCEEEEEETTSCEEEEEE
T ss_pred             E----EEEccCCCCEEEEEEeCCCCEEEEEeCCCeEEEEEE
Confidence            2    1224567889999999999999999988 7999985

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=100.00  E-value=7e-36  Score=253.35  Aligned_cols=253  Identities=18%  Similarity=0.285  Sum_probs=190.6

Q ss_pred             cccccccccceeEEEEccCCCEEEEeeCCCcEEEEeecCCCceEEEEe-cCcccCeEEEEeeCCCCCCEEEEEeCCCeEE
Q 022111            4 QKIETGHEDTVHDVAMDFYGKRLATASSDSSIKIIGLSNSASQHLATL-KGHRGPVWQVAWAHPKFGSILASCSYDGQVI   82 (302)
Q Consensus         4 ~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~lw~~~~~~~~~~~~~-~~h~~~v~~v~~~~~~~~~~l~s~s~D~~i~   82 (302)
                      .++++||+++|++++|+|++++|+||+.|++|++||+.++  +.+..+ .+|...|++++|+++  ++ +++++.|+.++
T Consensus         5 ~~~~~GH~~~V~~l~~s~dg~~l~s~s~Dg~v~vWd~~~~--~~~~~~~~~h~~~v~~v~~~~~--g~-~~~~~~d~~v~   79 (299)
T d1nr0a2           5 DQVRYGHNKAITALSSSADGKTLFSADAEGHINSWDISTG--ISNRVFPDVHATMITGIKTTSK--GD-LFTVSWDDHLK   79 (299)
T ss_dssp             EEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTC--CEEECSSCSCSSCEEEEEECTT--SC-EEEEETTTEEE
T ss_pred             ceEcCCCCCCcEEEEECCCCCEEEEEcCCCeEEEEECCCC--cEEEEEcCCCCCcEEEEEeecc--ce-eecccceeeEE
Confidence            5678999999999999999999999999999999998653  344555 479999999999864  54 56778899999


Q ss_pred             EEEcCCCCc-------------eeE-----------------EEE-------ecCCCCCeeEEEecCCCCCcEEEEEecC
Q 022111           83 IWKEGNQND-------------WTQ-----------------AHT-------FNDHKSSVNSIAWAPHELGLSLACGSSD  125 (302)
Q Consensus        83 iwd~~~~~~-------------~~~-----------------~~~-------~~~h~~~i~~l~~~pd~~~~~l~sg~~d  125 (302)
                      +|+......             ...                 +..       .......+.+++|+|+  +.++++|+.|
T Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~s~~--~~~l~~g~~d  157 (299)
T d1nr0a2          80 VVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAACYKHIAIYSHGKLTEVPISYNSSCVALSND--KQFVAVGGQD  157 (299)
T ss_dssp             EECSSSSSSCTTSCCEEECSSCEEEEEECTTSSCEEEEESSEEEEEETTEEEEEECSSCEEEEEECTT--SCEEEEEETT
T ss_pred             EeccCCcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc--cccccccccc
Confidence            998643210             000                 000       0013456788899987  6689999999


Q ss_pred             CcEEEEEecCCCCeeeeeecccCCCCeEEEEeCCCCCCCceeecccCCCceeEEEeeCCCcEEEEEEecCcccccccccc
Q 022111          126 GNISVFTATADGGWDTTRIDQAHPVGVTSVSWAPAMAPGALVGLGLLDPVQKLASCGCDNTVKVWKMYNGIWKMDCFPAL  205 (302)
Q Consensus       126 ~~v~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~D~~v~iwd~~~~~~~~~~~~~~  205 (302)
                      +.+++||++...... .. ...|...|++++|+|++              .+|++++.|+.|++||+.++.. ......+
T Consensus       158 g~i~~~d~~~~~~~~-~~-~~~~~~~i~~~~~~~~~--------------~~l~~~~~d~~i~~~~~~~~~~-~~~~~~~  220 (299)
T d1nr0a2         158 SKVHVYKLSGASVSE-VK-TIVHPAEITSVAFSNNG--------------AFLVATDQSRKVIPYSVANNFE-LAHTNSW  220 (299)
T ss_dssp             SEEEEEEEETTEEEE-EE-EEECSSCEEEEEECTTS--------------SEEEEEETTSCEEEEEGGGTTE-ESCCCCC
T ss_pred             ccccccccccccccc-cc-ccccccccccccccccc--------------cccccccccccccccccccccc-ccccccc
Confidence            999999987542211 12 23688899999999863              7899999999999999876532 2334567


Q ss_pred             ccCCCceeEEEeeCCCCCCccEEEEEecCCeEEEEEeccCCcceeeeeec-cCCCcEEEEEEccCCCEEEEecCC-ceEE
Q 022111          206 QMHSDWVRSVAWAPNLGLPKSTIASASQDGTVVIWTCAKEGEQWEGRVLK-DFKTPVWSVSWSLTGNLLAVADAN-NVTL  283 (302)
Q Consensus       206 ~~h~~~v~~v~~~p~~~~~~~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~-~~~~~v~~~~~spdg~~la~~~~d-~i~~  283 (302)
                      .+|...|++++|+|++    .+|++|+.|+.|++||++....... .... .+...+.++.| +++++|++++.| .|++
T Consensus       221 ~~h~~~v~~l~~s~~~----~~l~sgs~dg~i~iwd~~~~~~~~~-~~~~~~~~~~v~~~~~-~~~~~l~s~s~D~~i~i  294 (299)
T d1nr0a2         221 TFHTAKVACVSWSPDN----VRLATGSLDNSVIVWNMNKPSDHPI-IIKGAHAMSSVNSVIW-LNETTIVSAGQDSNIKF  294 (299)
T ss_dssp             CCCSSCEEEEEECTTS----SEEEEEETTSCEEEEETTCTTSCCE-EETTSSTTSCEEEEEE-EETTEEEEEETTSCEEE
T ss_pred             cccccccccccccccc----cceEEEcCCCEEEEEECCCCCcceE-EEecCCCCCcEEEEEE-CCCCEEEEEeCCCEEEE
Confidence            7899999999999985    7899999999999999976432211 1222 23455776765 567888889888 7999


Q ss_pred             eee
Q 022111          284 WKE  286 (302)
Q Consensus       284 w~~  286 (302)
                      |+.
T Consensus       295 Wdl  297 (299)
T d1nr0a2         295 WNV  297 (299)
T ss_dssp             EEC
T ss_pred             Eec
Confidence            996

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=4.7e-35  Score=253.25  Aligned_cols=248  Identities=17%  Similarity=0.235  Sum_probs=200.9

Q ss_pred             ccccceeEEEEccCCCEEEEeeCCCcEEEEeecCCCc---eEEEEecCcccCeEEEEeeCCCCCCEEEEEeCCCeEEEEE
Q 022111            9 GHEDTVHDVAMDFYGKRLATASSDSSIKIIGLSNSAS---QHLATLKGHRGPVWQVAWAHPKFGSILASCSYDGQVIIWK   85 (302)
Q Consensus         9 ~h~~~v~~~~~s~~~~~l~s~~~d~~v~lw~~~~~~~---~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~s~D~~i~iwd   85 (302)
                      +|...|++++|+++|++||+|+ |+.|+|||+.....   .......+|.+.|.+++|+++  +++|++|+.|++|++||
T Consensus        49 ~H~~~V~~v~fs~~g~~latg~-dg~V~iWd~~~~~~~~~~~~~~~~~h~~~I~~v~~s~d--g~~l~s~~~dg~i~iwd  125 (337)
T d1gxra_          49 NHGEVVCAVTISNPTRHVYTGG-KGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPD--GCTLIVGGEASTLSIWD  125 (337)
T ss_dssp             CCSSCCCEEEECSSSSEEEEEC-BSEEEEEETTSTTCCSCSEEEECSCTTSBEEEEEECTT--SSEEEEEESSSEEEEEE
T ss_pred             CCCCcEEEEEECCCCCEEEEEE-CCEEEEEEccCCcccceeEEeeecCCCCcEEEEEEcCC--CCEEEEeeccccccccc
Confidence            7999999999999999999987 89999999865321   122345689999999999864  89999999999999999


Q ss_pred             cCCCCceeEEEEecCCCCCeeEEEecCCCCCcEEEEEecCCcEEEEEecCCCCeeeeeecccCCCCeEEEEeCCCCCCCc
Q 022111           86 EGNQNDWTQAHTFNDHKSSVNSIAWAPHELGLSLACGSSDGNISVFTATADGGWDTTRIDQAHPVGVTSVSWAPAMAPGA  165 (302)
Q Consensus        86 ~~~~~~~~~~~~~~~h~~~i~~l~~~pd~~~~~l~sg~~d~~v~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~  165 (302)
                      +.... ......+..|...+.+++|+|+  +.++++++.|+.|++|++....   .......|...+.+++|++++    
T Consensus       126 ~~~~~-~~~~~~~~~~~~~v~~~~~~~~--~~~l~s~~~d~~i~~~~~~~~~---~~~~~~~~~~~v~~l~~s~~~----  195 (337)
T d1gxra_         126 LAAPT-PRIKAELTSSAPACYALAISPD--SKVCFSCCSDGNIAVWDLHNQT---LVRQFQGHTDGASCIDISNDG----  195 (337)
T ss_dssp             CCCC---EEEEEEECSSSCEEEEEECTT--SSEEEEEETTSCEEEEETTTTE---EEEEECCCSSCEEEEEECTTS----
T ss_pred             ccccc-cccccccccccccccccccccc--cccccccccccccccccccccc---ccccccccccccccccccccc----
Confidence            86543 2345667789999999999998  6689999999999999987532   122224788899999998863    


Q ss_pred             eeecccCCCceeEEEeeCCCcEEEEEEecCccccccccccccCCCceeEEEeeCCCCCCccEEEEEecCCeEEEEEeccC
Q 022111          166 LVGLGLLDPVQKLASCGCDNTVKVWKMYNGIWKMDCFPALQMHSDWVRSVAWAPNLGLPKSTIASASQDGTVVIWTCAKE  245 (302)
Q Consensus       166 ~~~~~~~~~~~~l~s~~~D~~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~l~s~s~D~~i~iwd~~~~  245 (302)
                                ..+++|+.|+.+++||++++.    .+.. ..|.+.|.+++|+|++    +.|++++.|+.+++||++..
T Consensus       196 ----------~~~~~~~~d~~v~i~d~~~~~----~~~~-~~~~~~i~~l~~~~~~----~~l~~~~~d~~i~i~d~~~~  256 (337)
T d1gxra_         196 ----------TKLWTGGLDNTVRSWDLREGR----QLQQ-HDFTSQIFSLGYCPTG----EWLAVGMESSNVEVLHVNKP  256 (337)
T ss_dssp             ----------SEEEEEETTSEEEEEETTTTE----EEEE-EECSSCEEEEEECTTS----SEEEEEETTSCEEEEETTSS
T ss_pred             ----------cccccccccccccccccccce----eecc-cccccceEEEEEcccc----cccceecccccccccccccc
Confidence                      789999999999999998763    2222 3578899999999985    78999999999999999764


Q ss_pred             CcceeeeeeccCCCcEEEEEEccCCCEEEEecCC-ceEEeeecCCceE
Q 022111          246 GEQWEGRVLKDFKTPVWSVSWSLTGNLLAVADAN-NVTLWKEAVDGEW  292 (302)
Q Consensus       246 ~~~~~~~~~~~~~~~v~~~~~spdg~~la~~~~d-~i~~w~~~~~~~~  292 (302)
                      ..    .....+...|.+++|+|+|++|++++.| .|++|+.......
T Consensus       257 ~~----~~~~~~~~~i~~v~~s~~g~~l~s~s~Dg~i~iwd~~~~~~~  300 (337)
T d1gxra_         257 DK----YQLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASI  300 (337)
T ss_dssp             CE----EEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEE
T ss_pred             cc----ccccccccccceEEECCCCCEEEEEeCCCeEEEEECCCCCEE
Confidence            31    2235677889999999999999999988 6999997654443

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=100.00  E-value=5.3e-35  Score=250.81  Aligned_cols=250  Identities=19%  Similarity=0.239  Sum_probs=197.7

Q ss_pred             cccceeEEEEccCCCEEEEeeCCCcEEEEeecCCCceEEEEecCcccCeEEEEeeCCCCCCEEEEEeCCCeEEEEEcCCC
Q 022111           10 HEDTVHDVAMDFYGKRLATASSDSSIKIIGLSNSASQHLATLKGHRGPVWQVAWAHPKFGSILASCSYDGQVIIWKEGNQ   89 (302)
Q Consensus        10 h~~~v~~~~~s~~~~~l~s~~~d~~v~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~s~D~~i~iwd~~~~   89 (302)
                      +++.+..++++|+|+.|+.++ ++.|.+|++...  .....+.+|.+.|++++|+|+  |++||+|+.|++|+|||+...
T Consensus        16 ~r~~~~~~a~~~~g~~l~~~~-~~~v~i~~~~~~--~~~~~~~~H~~~v~~~~~sp~--g~~latg~~dg~i~iwd~~~~   90 (311)
T d1nr0a1          16 ARGTAVVLGNTPAGDKIQYCN-GTSVYTVPVGSL--TDTEIYTEHSHQTTVAKTSPS--GYYCASGDVHGNVRIWDTTQT   90 (311)
T ss_dssp             CTTCCCCCEECTTSSEEEEEE-TTEEEEEETTCS--SCCEEECCCSSCEEEEEECTT--SSEEEEEETTSEEEEEESSST
T ss_pred             CCCCeEEEEEcCCCCEEEEEe-CCEEEEEECCCC--ceeEEEcCCCCCEEEEEEeCC--CCeEeccccCceEeeeeeecc
Confidence            455566788999999998875 677999999653  344567899999999999864  899999999999999999765


Q ss_pred             CceeEEEEecCCCCCeeEEEecCCCCCcEEEEEec--CCcEEEEEecCCCCeeeeeecccCCCCeEEEEeCCCCCCCcee
Q 022111           90 NDWTQAHTFNDHKSSVNSIAWAPHELGLSLACGSS--DGNISVFTATADGGWDTTRIDQAHPVGVTSVSWAPAMAPGALV  167 (302)
Q Consensus        90 ~~~~~~~~~~~h~~~i~~l~~~pd~~~~~l~sg~~--d~~v~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~  167 (302)
                      .. .....+..|..+|.+++|+|+  +.++++++.  ++.+++|++......  ..+ .+|...|.+++|+|++      
T Consensus        91 ~~-~~~~~~~~~~~~v~~v~~s~d--~~~l~~~~~~~~~~~~v~~~~~~~~~--~~l-~~h~~~v~~v~~~~~~------  158 (311)
T d1nr0a1          91 TH-ILKTTIPVFSGPVKDISWDSE--SKRIAAVGEGRERFGHVFLFDTGTSN--GNL-TGQARAMNSVDFKPSR------  158 (311)
T ss_dssp             TC-CEEEEEECSSSCEEEEEECTT--SCEEEEEECCSSCSEEEEETTTCCBC--BCC-CCCSSCEEEEEECSSS------
T ss_pred             cc-ccccccccccCcccccccccc--cccccccccccccccccccccccccc--ccc-cccccccccccccccc------
Confidence            43 233557789999999999998  567888875  466999998754322  233 3788899999999864      


Q ss_pred             ecccCCCceeEEEeeCCCcEEEEEEecCccccccccccccCCCceeEEEeeCCCCCCccEEEEEecCCeEEEEEeccCCc
Q 022111          168 GLGLLDPVQKLASCGCDNTVKVWKMYNGIWKMDCFPALQMHSDWVRSVAWAPNLGLPKSTIASASQDGTVVIWTCAKEGE  247 (302)
Q Consensus       168 ~~~~~~~~~~l~s~~~D~~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~l~s~s~D~~i~iwd~~~~~~  247 (302)
                             ...|++|+.|+.|++||+++.    .....+.+|...|+++.|+|++    +.|++++.|+.|++||++....
T Consensus       159 -------~~~l~sgs~d~~i~i~d~~~~----~~~~~~~~~~~~i~~v~~~p~~----~~l~~~~~d~~v~~~d~~~~~~  223 (311)
T d1nr0a1         159 -------PFRIISGSDDNTVAIFEGPPF----KFKSTFGEHTKFVHSVRYNPDG----SLFASTGGDGTIVLYNGVDGTK  223 (311)
T ss_dssp             -------SCEEEEEETTSCEEEEETTTB----EEEEEECCCSSCEEEEEECTTS----SEEEEEETTSCEEEEETTTCCE
T ss_pred             -------eeeeccccccccccccccccc----ccccccccccccccccccCccc----cccccccccccccccccccccc
Confidence                   246899999999999999875    3455677899999999999985    7899999999999999876432


Q ss_pred             ceee----eeeccCCCcEEEEEEccCCCEEEEecCC-ceEEeeecCCce
Q 022111          248 QWEG----RVLKDFKTPVWSVSWSLTGNLLAVADAN-NVTLWKEAVDGE  291 (302)
Q Consensus       248 ~~~~----~~~~~~~~~v~~~~~spdg~~la~~~~d-~i~~w~~~~~~~  291 (302)
                      ....    ....+|..+|.+++|+|+|++|++|+.| .|+||+......
T Consensus       224 ~~~~~~~~~~~~~h~~~V~~~~~s~~~~~l~tgs~Dg~v~iwd~~t~~~  272 (311)
T d1nr0a1         224 TGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKV  272 (311)
T ss_dssp             EEECBCTTSSSCSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEE
T ss_pred             cccccccccccccccccccccccCCCCCEEEEEeCCCeEEEEECCCCcE
Confidence            1110    1123567889999999999999999988 699999864433

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=3.4e-33  Score=244.62  Aligned_cols=253  Identities=21%  Similarity=0.294  Sum_probs=190.6

Q ss_pred             ccccceeEEEEccCCCEEEEeeCCCcEEEEeecCCCceEEE------------------EecCcccCeEEEEeeCCCCCC
Q 022111            9 GHEDTVHDVAMDFYGKRLATASSDSSIKIIGLSNSASQHLA------------------TLKGHRGPVWQVAWAHPKFGS   70 (302)
Q Consensus         9 ~h~~~v~~~~~s~~~~~l~s~~~d~~v~lw~~~~~~~~~~~------------------~~~~h~~~v~~v~~~~~~~~~   70 (302)
                      +|++.|++++|+|||++||+|+ |++|+||++....  .+.                  ...+|...|++++|+++  ++
T Consensus        60 ~H~~~V~~l~fs~dg~~lasg~-d~~i~iW~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~--~~  134 (388)
T d1erja_          60 DHTSVVCCVKFSNDGEYLATGC-NKTTQVYRVSDGS--LVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPD--GK  134 (388)
T ss_dssp             ECSSCCCEEEECTTSSEEEEEC-BSCEEEEETTTCC--EEEEECC-----------------CCCCBEEEEEECTT--SS
T ss_pred             CCCCcEEEEEECCCCCEEEEEe-CCeEEEEEecccc--eEeeecccccccccccccccccccCCCCCEEEEEECCC--CC
Confidence            6999999999999999999986 8999999986432  222                  22357778999999864  89


Q ss_pred             EEEEEeCCCeEEEEEcCCCCceeEEEEecCCCCCeeEEEecCCCCCcEEEEEecCCcEEEEEecCCCCeeeeeecccCCC
Q 022111           71 ILASCSYDGQVIIWKEGNQNDWTQAHTFNDHKSSVNSIAWAPHELGLSLACGSSDGNISVFTATADGGWDTTRIDQAHPV  150 (302)
Q Consensus        71 ~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~h~~~i~~l~~~pd~~~~~l~sg~~d~~v~~~~~~~~~~~~~~~~~~~h~~  150 (302)
                      +|++|+.|++|++||....   .....+.+|...|.+++|+++  +..+++++.++.+++||.....  .....  .+..
T Consensus       135 ~l~s~~~dg~v~i~~~~~~---~~~~~~~~h~~~v~~~~~~~~--~~~~~~~~~~~~i~~~d~~~~~--~~~~~--~~~~  205 (388)
T d1erja_         135 FLATGAEDRLIRIWDIENR---KIVMILQGHEQDIYSLDYFPS--GDKLVSGSGDRTVRIWDLRTGQ--CSLTL--SIED  205 (388)
T ss_dssp             EEEEEETTSCEEEEETTTT---EEEEEECCCSSCEEEEEECTT--SSEEEEEETTSEEEEEETTTTE--EEEEE--ECSS
T ss_pred             cceeccccccccccccccc---ccccccccccccccccccccc--cccccccccceeeeeeeccccc--ccccc--cccc
Confidence            9999999999999998765   456677889999999999987  5689999999999999986432  11221  2344


Q ss_pred             CeEEEEeCCCCCCCceeecccCCCceeEEEeeCCCcEEEEEEecCccccc---cccccccCCCceeEEEeeCCCCCCccE
Q 022111          151 GVTSVSWAPAMAPGALVGLGLLDPVQKLASCGCDNTVKVWKMYNGIWKMD---CFPALQMHSDWVRSVAWAPNLGLPKST  227 (302)
Q Consensus       151 ~v~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~D~~v~iwd~~~~~~~~~---~~~~~~~h~~~v~~v~~~p~~~~~~~~  227 (302)
                      ...++.+.+..             +.+|++++.|+.|++||+.++.....   ......+|.+.|.+++|+|++    .+
T Consensus       206 ~~~~~~~~~~~-------------~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~----~~  268 (388)
T d1erja_         206 GVTTVAVSPGD-------------GKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDG----QS  268 (388)
T ss_dssp             CEEEEEECSTT-------------CCEEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTTS----SE
T ss_pred             ccccccccCCC-------------CCeEEEEcCCCeEEEeecccCccceeeccccccccCCCCCEEEEEECCCC----CE
Confidence            45566666532             57899999999999999876532211   122346799999999999985    78


Q ss_pred             EEEEecCCeEEEEEeccCCcce---------eeeeeccCCCcEEEEEEccCCCEEEEecCC-ceEEeeecCCceE
Q 022111          228 IASASQDGTVVIWTCAKEGEQW---------EGRVLKDFKTPVWSVSWSLTGNLLAVADAN-NVTLWKEAVDGEW  292 (302)
Q Consensus       228 l~s~s~D~~i~iwd~~~~~~~~---------~~~~~~~~~~~v~~~~~spdg~~la~~~~d-~i~~w~~~~~~~~  292 (302)
                      |++++.|+.|++||++......         .......+...|.+++|+|+|++|++|+.| .|++|+.......
T Consensus       269 l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~sg~~dg~i~vwd~~~~~~~  343 (388)
T d1erja_         269 VVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPL  343 (388)
T ss_dssp             EEEEETTSEEEEEEC---------------CEEEEEECCSSCEEEEEECGGGCEEEEEETTSEEEEEETTTCCEE
T ss_pred             EEEEECCCcEEEEeccCCccccccccccccceeeecccccceEEEEEECCCCCEEEEEeCCCEEEEEECCCCcEE
Confidence            9999999999999987532110         011223566789999999999999999998 6999998654443

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=8.5e-33  Score=242.24  Aligned_cols=256  Identities=18%  Similarity=0.175  Sum_probs=196.9

Q ss_pred             ccccccccceeEEEEccCCCEEEEeeCCCcEEEEeecCCCceEEEEecCcccCeEEEEeeCCCCCCEEEEEeCCCeEEEE
Q 022111            5 KIETGHEDTVHDVAMDFYGKRLATASSDSSIKIIGLSNSASQHLATLKGHRGPVWQVAWAHPKFGSILASCSYDGQVIIW   84 (302)
Q Consensus         5 ~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~s~D~~i~iw   84 (302)
                      ..+.+|+++|++++|+|++++|++|+.|++|+||++..........+.+|...|.+++|+|+  ++.|++++.|+++++|
T Consensus        45 ~~l~gH~~~V~~l~fsp~~~~l~s~s~D~~i~vWd~~~~~~~~~~~~~~~~~~v~~i~~~p~--~~~l~~~s~d~~i~i~  122 (371)
T d1k8kc_          45 HELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKGRTWKPTLVILRINRAARCVRWAPN--EKKFAVGSGSRVISIC  122 (371)
T ss_dssp             EEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEEEETTEEEEEEECCCCSSCEEEEEECTT--SSEEEEEETTSSEEEE
T ss_pred             EEecCCCCCEEEEEECCCCCEEEEEECCCeEEEEeecccccccccccccccccccccccccc--cccceeecccCcceee
Confidence            34678999999999999999999999999999999987655566677889999999999864  7899999999999999


Q ss_pred             EcCCCCce-eEEEEecCCCCCeeEEEecCCCCCcEEEEEecCCcEEEEEecCCCCe---------------eeeeecccC
Q 022111           85 KEGNQNDW-TQAHTFNDHKSSVNSIAWAPHELGLSLACGSSDGNISVFTATADGGW---------------DTTRIDQAH  148 (302)
Q Consensus        85 d~~~~~~~-~~~~~~~~h~~~i~~l~~~pd~~~~~l~sg~~d~~v~~~~~~~~~~~---------------~~~~~~~~h  148 (302)
                      ++...... ........|...|.+++|+|+  +.+|++|+.|+.+++|+.......               ........|
T Consensus       123 ~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~--~~~l~s~s~D~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  200 (371)
T d1k8kc_         123 YFEQENDWWVCKHIKKPIRSTVLSLDWHPN--SVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSS  200 (371)
T ss_dssp             EEETTTTEEEEEEECTTCCSCEEEEEECTT--SSEEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCC
T ss_pred             eeeccccccccccccccccccccccccccc--ccceeccccCcEEEEEeeccCccccccccccccccccceeeeeeccCc
Confidence            98655432 233456678999999999998  679999999999999997532100               011112357


Q ss_pred             CCCeEEEEeCCCCCCCceeecccCCCceeEEEeeCCCcEEEEEEecCccccccccccccCCCceeEEEeeCCCCCCccEE
Q 022111          149 PVGVTSVSWAPAMAPGALVGLGLLDPVQKLASCGCDNTVKVWKMYNGIWKMDCFPALQMHSDWVRSVAWAPNLGLPKSTI  228 (302)
Q Consensus       149 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~D~~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~l  228 (302)
                      ...+.+++|+|+              +.+|++++.|+.|++||+.++    ..+..+.+|..+|.+++|+|++    .+|
T Consensus       201 ~~~v~~~~~s~~--------------g~~l~s~~~d~~i~iwd~~~~----~~~~~~~~~~~~v~s~~fs~d~----~~l  258 (371)
T d1k8kc_         201 CGWVHGVCFSAN--------------GSRVAWVSHDSTVCLADADKK----MAVATLASETLPLLAVTFITES----SLV  258 (371)
T ss_dssp             SSCEEEEEECSS--------------SSEEEEEETTTEEEEEEGGGT----TEEEEEECSSCCEEEEEEEETT----EEE
T ss_pred             cCcEEEEEeecc--------------cccccccccCCcceEEeeecc----cceeeeecccccceeeeecCCC----CEE
Confidence            778899999886              378999999999999999876    3456678899999999999985    556


Q ss_pred             EEEecCCeEEEEEeccCCcceee--------------------------------------eeeccCCCcEEEEEEccCC
Q 022111          229 ASASQDGTVVIWTCAKEGEQWEG--------------------------------------RVLKDFKTPVWSVSWSLTG  270 (302)
Q Consensus       229 ~s~s~D~~i~iwd~~~~~~~~~~--------------------------------------~~~~~~~~~v~~~~~spdg  270 (302)
                      ++| .|+.+++|........+..                                      .....|...|.++++.|.+
T Consensus       259 a~g-~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~H~~~I~~i~~~~~~  337 (371)
T d1k8kc_         259 AAG-HDCFPVLFTYDSAAGKLSFGGRLDVPKQSSQRGLTARERFQNLDKKASSEGSAAAGAGLDSLHKNSVSQISVLSGG  337 (371)
T ss_dssp             EEE-TTSSCEEEEEETTTTEEEECCCCCCC--------CHHHHHHHCCCCC---------CCCSSSSSSCEEEEEEEEST
T ss_pred             EEE-cCCceEEEEeeCCCceEEEeeeecCccccccccccceeeEecccceeEEeccccccceecccccCCEEEEEEeCCC
Confidence            654 5777778775432111000                                      0001256679999998754


Q ss_pred             ----CEEEEecCC-ceEEeeec
Q 022111          271 ----NLLAVADAN-NVTLWKEA  287 (302)
Q Consensus       271 ----~~la~~~~d-~i~~w~~~  287 (302)
                          ..|++++.| .|++|+..
T Consensus       338 ~~~~~~~~T~g~Dg~v~iW~~~  359 (371)
T d1k8kc_         338 KAKCSQFCTTGMDGGMSIWDVR  359 (371)
T ss_dssp             TTSCSEEEEEETTSEEEEEEHH
T ss_pred             CcceEEEEEEcCCCeEEEEeCC
Confidence                468899888 79999974

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=5.6e-33  Score=237.29  Aligned_cols=249  Identities=25%  Similarity=0.386  Sum_probs=185.2

Q ss_pred             CcccccccccceeEEEEccCCCEEEEeeCCCcEEEEeecCCCceEEEEecCcccCeEEEEeeCCCCCCEEEEEeCCCeEE
Q 022111            3 AQKIETGHEDTVHDVAMDFYGKRLATASSDSSIKIIGLSNSASQHLATLKGHRGPVWQVAWAHPKFGSILASCSYDGQVI   82 (302)
Q Consensus         3 ~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~s~D~~i~   82 (302)
                      ..+++.||++.|.+ +++++|++|||||.|++|+|||+.+  .+++.++.+|.+.|.+++|++    ++|++|+.|++++
T Consensus         8 ~~~~l~GH~~~V~s-~~~~~g~~l~sgs~Dg~i~vWd~~~--~~~~~~~~~h~~~V~~v~~~~----~~l~s~s~D~~~~   80 (342)
T d2ovrb2           8 SPKVLKGHDDHVIT-CLQFCGNRIVSGSDDNTLKVWSAVT--GKCLRTLVGHTGGVWSSQMRD----NIIISGSTDRTLK   80 (342)
T ss_dssp             CCEEEECSTTSCEE-EEEEETTEEEEEETTSCEEEEETTT--CCEEEECCCCSSCEEEEEEET----TEEEEEETTSCEE
T ss_pred             cCEEECCcCCceEE-EEEECCCEEEEEeCCCeEEEEECCC--CCEEEEEeCCCCCEEEEEeCC----Cccccceeccccc
Confidence            45668899999876 5778899999999999999999865  456788999999999999973    5899999999999


Q ss_pred             EEEcCCCCc-----------------------------------------------------------------------
Q 022111           83 IWKEGNQND-----------------------------------------------------------------------   91 (302)
Q Consensus        83 iwd~~~~~~-----------------------------------------------------------------------   91 (302)
                      +|+......                                                                       
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~  160 (342)
T d2ovrb2          81 VWNAETGECIHTLYGHTSTVRCMHLHEKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQYDGRRVVSGAYDFMVK  160 (342)
T ss_dssp             EEETTTTEEEEEECCCSSCEEEEEEETTEEEEEETTSEEEEEESSSCCEEEEEECCSSCEEEEEECSSCEEEEETTSCEE
T ss_pred             ccccccccceecccccceeEeeeecccccccccccceeEEEeecccccceeeeecccccceeeccccceeeeecCCCeEE
Confidence            998643110                                                                       


Q ss_pred             ------eeEEEEecCCCCCeeEEEecCCCCCcEEEEEecCCcEEEEEecCCCCeeeeeecccCCCCeEEEEeCCCCCCCc
Q 022111           92 ------WTQAHTFNDHKSSVNSIAWAPHELGLSLACGSSDGNISVFTATADGGWDTTRIDQAHPVGVTSVSWAPAMAPGA  165 (302)
Q Consensus        92 ------~~~~~~~~~h~~~i~~l~~~pd~~~~~l~sg~~d~~v~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~  165 (302)
                            ......+.+|...+..+.+  +  +..+++|+.|+.|++||+.....  .... ..|...+.++.+++      
T Consensus       161 ~~d~~~~~~~~~~~~~~~~~~~~~~--~--~~~l~s~~~dg~i~~~d~~~~~~--~~~~-~~~~~~v~~~~~~~------  227 (342)
T d2ovrb2         161 VWDPETETCLHTLQGHTNRVYSLQF--D--GIHVVSGSLDTSIRVWDVETGNC--IHTL-TGHQSLTSGMELKD------  227 (342)
T ss_dssp             EEEGGGTEEEEEECCCSSCEEEEEE--C--SSEEEEEETTSCEEEEETTTCCE--EEEE-CCCCSCEEEEEEET------
T ss_pred             EeecccceeeEEEcCcccccccccC--C--CCEEEEEeCCCeEEEeeccccee--eeEe-cccccceeEEecCC------
Confidence                  0112233445555555444  3  45899999999999999875432  2223 36778888887754      


Q ss_pred             eeecccCCCceeEEEeeCCCcEEEEEEecCccccccccccccCCCceeEEEeeCCCCCCccEEEEEecCCeEEEEEeccC
Q 022111          166 LVGLGLLDPVQKLASCGCDNTVKVWKMYNGIWKMDCFPALQMHSDWVRSVAWAPNLGLPKSTIASASQDGTVVIWTCAKE  245 (302)
Q Consensus       166 ~~~~~~~~~~~~l~s~~~D~~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~l~s~s~D~~i~iwd~~~~  245 (302)
                                .+|++++.|+.|++||+...... ..+.....|...+.+++++|+      ++++|+.||+|+|||+++.
T Consensus       228 ----------~~l~s~s~d~~i~iwd~~~~~~~-~~~~~~~~~~~~~~~~~~~~~------~~~s~s~Dg~i~iwd~~tg  290 (342)
T d2ovrb2         228 ----------NILVSGNADSTVKIWDIKTGQCL-QTLQGPNKHQSAVTCLQFNKN------FVITSSDDGTVKLWDLKTG  290 (342)
T ss_dssp             ----------TEEEEEETTSCEEEEETTTCCEE-EEECSTTSCSSCEEEEEECSS------EEEEEETTSEEEEEETTTC
T ss_pred             ----------CEEEEEcCCCEEEEEeccccccc-ccccccceeeeceeecccCCC------eeEEEcCCCEEEEEECCCC
Confidence                      58999999999999998765321 223344567888898888764      6999999999999999764


Q ss_pred             Ccceeeee--eccCCCcEEEEEEccCCCEEEEecCCc-----eEEeeecC
Q 022111          246 GEQWEGRV--LKDFKTPVWSVSWSLTGNLLAVADANN-----VTLWKEAV  288 (302)
Q Consensus       246 ~~~~~~~~--~~~~~~~v~~~~~spdg~~la~~~~d~-----i~~w~~~~  288 (302)
                      ........  ..++...|++++|+|++.+||+|+.|+     |++||...
T Consensus       291 ~~i~~~~~~~~~~~~~~v~~v~~s~~~~~la~g~~dGt~~~~l~~~Df~~  340 (342)
T d2ovrb2         291 EFIRNLVTLESGGSGGVVWRIRASNTKLVCAVGSRNGTEETKLLVLDFDV  340 (342)
T ss_dssp             CEEEEEEECTTGGGTCEEEEEEECSSEEEEEEECSSSSSCCEEEEEECCC
T ss_pred             CEEEEEecccCCCCCCCEEEEEECCCCCEEEEEeCCCCCeeEEEEEeCCC
Confidence            32111111  134567899999999999999998773     89999764

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=1.2e-32  Score=241.00  Aligned_cols=250  Identities=26%  Similarity=0.341  Sum_probs=193.3

Q ss_pred             cccccceeEEEEccCCCEEEEeeCCCcEEEEeecCCCceEEEEecCcccCeEEEEeeCCCCCCEEEEEeCCCeEEEEEcC
Q 022111            8 TGHEDTVHDVAMDFYGKRLATASSDSSIKIIGLSNSASQHLATLKGHRGPVWQVAWAHPKFGSILASCSYDGQVIIWKEG   87 (302)
Q Consensus         8 ~~h~~~v~~~~~s~~~~~l~s~~~d~~v~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~s~D~~i~iwd~~   87 (302)
                      .+|...|++++|+|++++|++|+.|++|++|+...  .+.+..+.+|...|.+++|+++  +..+++++.++.+++||.+
T Consensus       118 ~~~~~~V~~l~~s~~~~~l~s~~~dg~v~i~~~~~--~~~~~~~~~h~~~v~~~~~~~~--~~~~~~~~~~~~i~~~d~~  193 (388)
T d1erja_         118 PSSDLYIRSVCFSPDGKFLATGAEDRLIRIWDIEN--RKIVMILQGHEQDIYSLDYFPS--GDKLVSGSGDRTVRIWDLR  193 (388)
T ss_dssp             -CCCCBEEEEEECTTSSEEEEEETTSCEEEEETTT--TEEEEEECCCSSCEEEEEECTT--SSEEEEEETTSEEEEEETT
T ss_pred             cCCCCCEEEEEECCCCCcceecccccccccccccc--cccccccccccccccccccccc--cccccccccceeeeeeecc
Confidence            36888999999999999999999999999999865  4566778899999999999764  7889999999999999987


Q ss_pred             CCCceeEEEEecCCCCCeeEEEecCCCCCcEEEEEecCCcEEEEEecCCCCeeee----eecccCCCCeEEEEeCCCCCC
Q 022111           88 NQNDWTQAHTFNDHKSSVNSIAWAPHELGLSLACGSSDGNISVFTATADGGWDTT----RIDQAHPVGVTSVSWAPAMAP  163 (302)
Q Consensus        88 ~~~~~~~~~~~~~h~~~i~~l~~~pd~~~~~l~sg~~d~~v~~~~~~~~~~~~~~----~~~~~h~~~v~~~~~~~~~~~  163 (302)
                      ...   ...... +.....++.++|.+ +.+|++|+.|+.|++|+..........    ....+|...|.++.|+|+   
T Consensus       194 ~~~---~~~~~~-~~~~~~~~~~~~~~-~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~---  265 (388)
T d1erja_         194 TGQ---CSLTLS-IEDGVTTVAVSPGD-GKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRD---  265 (388)
T ss_dssp             TTE---EEEEEE-CSSCEEEEEECSTT-CCEEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTT---
T ss_pred             ccc---cccccc-cccccccccccCCC-CCeEEEEcCCCeEEEeecccCccceeeccccccccCCCCCEEEEEECCC---
Confidence            652   333333 44556666666542 678999999999999998754322111    112357888999999986   


Q ss_pred             CceeecccCCCceeEEEeeCCCcEEEEEEecCccc--------cccccccccCCCceeEEEeeCCCCCCccEEEEEecCC
Q 022111          164 GALVGLGLLDPVQKLASCGCDNTVKVWKMYNGIWK--------MDCFPALQMHSDWVRSVAWAPNLGLPKSTIASASQDG  235 (302)
Q Consensus       164 ~~~~~~~~~~~~~~l~s~~~D~~v~iwd~~~~~~~--------~~~~~~~~~h~~~v~~v~~~p~~~~~~~~l~s~s~D~  235 (302)
                                 +.+|++|+.|+.|++||+.+....        ..+......|...|.+++|+|++    .+|++|+.||
T Consensus       266 -----------~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~----~~l~sg~~dg  330 (388)
T d1erja_         266 -----------GQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQND----EYILSGSKDR  330 (388)
T ss_dssp             -----------SSEEEEEETTSEEEEEEC---------------CEEEEEECCSSCEEEEEECGGG----CEEEEEETTS
T ss_pred             -----------CCEEEEEECCCcEEEEeccCCccccccccccccceeeecccccceEEEEEECCCC----CEEEEEeCCC
Confidence                       378999999999999998764321        11223456789999999999985    7899999999


Q ss_pred             eEEEEEeccCCcceeeeeeccCCCcEEEEE------EccCCCEEEEecCC-ceEEeeec
Q 022111          236 TVVIWTCAKEGEQWEGRVLKDFKTPVWSVS------WSLTGNLLAVADAN-NVTLWKEA  287 (302)
Q Consensus       236 ~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~------~spdg~~la~~~~d-~i~~w~~~  287 (302)
                      .|++||+++...   ...+.+|...|.+++      |+|++++||+|+.| .|+||+..
T Consensus       331 ~i~vwd~~~~~~---~~~l~~H~~~V~~~~~~~~~~~spd~~~l~s~s~Dg~I~iW~~~  386 (388)
T d1erja_         331 GVLFWDKKSGNP---LLMLQGHRNSVISVAVANGSSLGPEYNVFATGSGDCKARIWKYK  386 (388)
T ss_dssp             EEEEEETTTCCE---EEEEECCSSCEEEEEECSSCTTCTTCEEEEEEETTSEEEEEEEE
T ss_pred             EEEEEECCCCcE---EEEEeCCCCCEEEEEEecCcccCCCCCEEEEEeCCCEEEEEeee
Confidence            999999976432   234567888999887      56899999999998 79999974

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=2.5e-32  Score=235.19  Aligned_cols=251  Identities=13%  Similarity=0.193  Sum_probs=183.2

Q ss_pred             cccc-ccceeEEEEcc--CCCEEEEeeCCCcEEEEeecCCCc------eEEEEecCcccCeEEEEeeCCCCCCEEEEEeC
Q 022111            7 ETGH-EDTVHDVAMDF--YGKRLATASSDSSIKIIGLSNSAS------QHLATLKGHRGPVWQVAWAHPKFGSILASCSY   77 (302)
Q Consensus         7 ~~~h-~~~v~~~~~s~--~~~~l~s~~~d~~v~lw~~~~~~~------~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~s~   77 (302)
                      +.+| ...|++++|+|  ++++||+|+.||+|+|||+.....      .....+..|.++|.+++|+++  +++|++++.
T Consensus        58 ~~gh~~~~v~~v~fsP~~~g~~lasgs~Dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~~--~~~l~~~~~  135 (325)
T d1pgua1          58 FTGHGSSVVTTVKFSPIKGSQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFE--GRRLCVVGE  135 (325)
T ss_dssp             ECTTTTSCEEEEEECSSTTCCEEEEEETTSEEEEEEEEEEGGGTEEEEEEEEEEECCSSCEEEEEECTT--SSEEEEEEC
T ss_pred             EeCCCCCCEEEEEEeeCCCCCEEEEEeCCCCEEEeeecCCcceeeeecccccccccccCcEEEEEECCC--CCccceeec
Confidence            4577 46899999997  568999999999999999853221      111234578899999999864  788877754


Q ss_pred             --CCeEEEEEcCCCCceeEEEEecCCCCCeeEEEecCCCCCcEEEEEecCCcEEEEEecCCCCeeeeeecccCCCCeEEE
Q 022111           78 --DGQVIIWKEGNQNDWTQAHTFNDHKSSVNSIAWAPHELGLSLACGSSDGNISVFTATADGGWDTTRIDQAHPVGVTSV  155 (302)
Q Consensus        78 --D~~i~iwd~~~~~~~~~~~~~~~h~~~i~~l~~~pd~~~~~l~sg~~d~~v~~~~~~~~~~~~~~~~~~~h~~~v~~~  155 (302)
                        ++.+++|+..++   .++..+.+|...|++++|+|+. ..++++++.|+.+++|+...............|...|.++
T Consensus       136 ~~~~~~~~~~~~~~---~~~~~~~~h~~~v~~~~~~~~~-~~~~~~~~~d~~v~~~d~~~~~~~~~~~~~~~~~~~v~~v  211 (325)
T d1pgua1         136 GRDNFGVFISWDSG---NSLGEVSGHSQRINACHLKQSR-PMRSMTVGDDGSVVFYQGPPFKFSASDRTHHKQGSFVRDV  211 (325)
T ss_dssp             CSSCSEEEEETTTC---CEEEECCSCSSCEEEEEECSSS-SCEEEEEETTTEEEEEETTTBEEEEEECSSSCTTCCEEEE
T ss_pred             cccceEEEEeeccc---ccceeeeecccccccccccccc-cceEEEeecccccccccccccccceecccccCCCCccEEe
Confidence              778999998765   3677888999999999999984 3468899999999999976432111122223567789999


Q ss_pred             EeCCCCCCCceeecccCCCceeEEEeeCCCcEEEEEEecCccccccccccccCCCceeEEEee---CCCCCCccEEEEEe
Q 022111          156 SWAPAMAPGALVGLGLLDPVQKLASCGCDNTVKVWKMYNGIWKMDCFPALQMHSDWVRSVAWA---PNLGLPKSTIASAS  232 (302)
Q Consensus       156 ~~~~~~~~~~~~~~~~~~~~~~l~s~~~D~~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~~~---p~~~~~~~~l~s~s  232 (302)
                      +|+|+.             +.+|++|+.|+.|++||++++    +++..+.+|...+.++.|+   |+    +.+|++++
T Consensus       212 ~~~pd~-------------~~~l~s~~~d~~i~iwd~~~~----~~~~~l~~~~~~v~~~~~s~~~~d----g~~l~s~s  270 (325)
T d1pgua1         212 EFSPDS-------------GEFVITVGSDRKISCFDGKSG----EFLKYIEDDQEPVQGGIFALSWLD----SQKFATVG  270 (325)
T ss_dssp             EECSTT-------------CCEEEEEETTCCEEEEETTTC----CEEEECCBTTBCCCSCEEEEEESS----SSEEEEEE
T ss_pred             eecccc-------------ceeccccccccceeeeeeccc----cccccccccccccccceeeeeccC----CCEEEEEe
Confidence            999964             478999999999999998876    3456777888777666665   45    37899999


Q ss_pred             cCCeEEEEEeccCCcceeeeeeccCCCcE--EEEEEccCCCEEEEecCC-ceEEeee
Q 022111          233 QDGTVVIWTCAKEGEQWEGRVLKDFKTPV--WSVSWSLTGNLLAVADAN-NVTLWKE  286 (302)
Q Consensus       233 ~D~~i~iwd~~~~~~~~~~~~~~~~~~~v--~~~~~spdg~~la~~~~d-~i~~w~~  286 (302)
                      .|++|+|||++....... .....+...+  .++.|++++ +|++++.| .|++||+
T Consensus       271 ~D~~i~iwd~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~-~l~s~s~dg~i~vwdl  325 (325)
T d1pgua1         271 ADATIRVWDVTTSKCVQK-WTLDKQQLGNQQVGVVATGNG-RIISLSLDGTLNFYEL  325 (325)
T ss_dssp             TTSEEEEEETTTTEEEEE-EECCTTCGGGCEEEEEEEETT-EEEEEETTSCEEEEET
T ss_pred             CCCeEEEEECCCCCEEEE-EEecCCcccCeEEEEEECCCC-EEEEEECCCEEEEEEC
Confidence            999999999976421111 1112222233  344554444 67778777 7999984

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=2e-31  Score=228.67  Aligned_cols=262  Identities=22%  Similarity=0.342  Sum_probs=180.1

Q ss_pred             CCCcccccccccceeEEEEccCCCEEEEeeCCCcEEEEeecCCCceEEEEecCcccCeEEEEeeCCCCCCEEEEEeCCCe
Q 022111            1 MPAQKIETGHEDTVHDVAMDFYGKRLATASSDSSIKIIGLSNSASQHLATLKGHRGPVWQVAWAHPKFGSILASCSYDGQ   80 (302)
Q Consensus         1 ~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~s~D~~   80 (302)
                      .|++.++.||.+.|.. |+++++++||||+.|++|+|||+.+  .+.+.++.+|++.|++++|++   +.+|++|+.|++
T Consensus         2 ~p~~~tL~GH~~~vit-c~~~~~~~l~tgs~Dg~i~vWd~~~--~~~~~~l~~H~~~V~~l~~s~---~~~l~s~s~D~~   75 (355)
T d1nexb2           2 VPQRTTLRGHMTSVIT-CLQFEDNYVITGADDKMIRVYDSIN--KKFLLQLSGHDGGVWALKYAH---GGILVSGSTDRT   75 (355)
T ss_dssp             CCEEEEEECCSSSCEE-EEEEETTEEEEEETTTEEEEEETTT--TEEEEEEECCSSCEEEEEEET---TTEEEEEETTCC
T ss_pred             CCCcEEECCcCCCcEE-EEEECCCEEEEEeCCCeEEEEECCC--CcEEEEEECCCCCEEEEEEcC---CCEEEEEecccc
Confidence            4777788999988643 3556789999999999999999865  567889999999999999975   368999999999


Q ss_pred             EEEEEcCCCCceeEEEEecC--CCCCeeEEEecCCCCCcEEEEEecCCcEEEEEecCCCCeee-----------------
Q 022111           81 VIIWKEGNQNDWTQAHTFND--HKSSVNSIAWAPHELGLSLACGSSDGNISVFTATADGGWDT-----------------  141 (302)
Q Consensus        81 i~iwd~~~~~~~~~~~~~~~--h~~~i~~l~~~pd~~~~~l~sg~~d~~v~~~~~~~~~~~~~-----------------  141 (302)
                      |++|+.....   .......  +......+.+.++  +..+++++.|+.|++|++........                 
T Consensus        76 i~iw~~~~~~---~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~  150 (355)
T d1nexb2          76 VRVWDIKKGC---CTHVFEGHNSTVRCLDIVEYKN--IKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEEN  150 (355)
T ss_dssp             EEEEETTTTE---EEEEECCCSSCEEEEEEEEETT--EEEEEEEETTSEEEEEECCC-----------CCCEEESCTTTC
T ss_pred             cccccccccc---cccccccccccccccccccccc--cceeeeecCCCcEEEEEccCCceeccccccceeccceeccccc
Confidence            9999987653   2222222  3334445556666  66899999999999999864321100                 


Q ss_pred             ---eeecccCCCCeEEEEeCC-----------------CC---------CCCceeecccCCCceeEEEeeCCCcEEEEEE
Q 022111          142 ---TRIDQAHPVGVTSVSWAP-----------------AM---------APGALVGLGLLDPVQKLASCGCDNTVKVWKM  192 (302)
Q Consensus       142 ---~~~~~~h~~~v~~~~~~~-----------------~~---------~~~~~~~~~~~~~~~~l~s~~~D~~v~iwd~  192 (302)
                         ......|...+.......                 ..         ...........+.+..+++++.|+.|++||+
T Consensus       151 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~  230 (355)
T d1nexb2         151 PYFVGVLRGHMASVRTVSGHGNIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCISASMDTTIRIWDL  230 (355)
T ss_dssp             TTEEEEEECCSSCEEEEEEETTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEEET
T ss_pred             cceeeeeeeccccccccccccceeeeecccceeeeeecccccceeeeeccccccccccccccceeeecccccceEEeeec
Confidence               000001222222111110                 00         0001111122344678999999999999999


Q ss_pred             ecCccccccccccccCCCceeEEEeeCCCCCCccEEEEEecCCeEEEEEeccCCcceeeeeeccCCCcEEE-EEEccCCC
Q 022111          193 YNGIWKMDCFPALQMHSDWVRSVAWAPNLGLPKSTIASASQDGTVVIWTCAKEGEQWEGRVLKDFKTPVWS-VSWSLTGN  271 (302)
Q Consensus       193 ~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~~~~~v~~-~~~spdg~  271 (302)
                      .++    .++..+.+|...|.+++|+|      ++|++++.||.|++||++....     ....+...+.+ ..|+++++
T Consensus       231 ~~~----~~~~~~~~h~~~v~~~~~~~------~~l~~~~~dg~i~iwd~~~~~~-----~~~~~~~~~~~~~~~~~~~~  295 (355)
T d1nexb2         231 ENG----ELMYTLQGHTALVGLLRLSD------KFLVSAAADGSIRGWDANDYSR-----KFSYHHTNLSAITTFYVSDN  295 (355)
T ss_dssp             TTC----CEEEEECCCSSCCCEEEECS------SEEEEECTTSEEEEEETTTCCE-----EEEEECTTCCCCCEEEECSS
T ss_pred             ccc----cccccccccccccccccccc------ceeeeeecccccccccccccce-----ecccccCCceEEEEEcCCCC
Confidence            876    34566789999999999976      4699999999999999875421     12233444444 45678888


Q ss_pred             EEEEecCCceEEeeecC
Q 022111          272 LLAVADANNVTLWKEAV  288 (302)
Q Consensus       272 ~la~~~~d~i~~w~~~~  288 (302)
                      +|++++++.|++|+...
T Consensus       296 ~l~~g~d~~i~vwd~~t  312 (355)
T d1nexb2         296 ILVSGSENQFNIYNLRS  312 (355)
T ss_dssp             EEEEEETTEEEEEETTT
T ss_pred             EEEEEeCCEEEEEECCC
Confidence            88888766899999753

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=4.9e-31  Score=227.02  Aligned_cols=253  Identities=15%  Similarity=0.208  Sum_probs=185.8

Q ss_pred             ceeEEEEccCCCEEEEeeCCC-cEEEEeecCCCceEEEEecCcc-cCeEEEEeeCCCCCCEEEEEeCCCeEEEEEcCCCC
Q 022111           13 TVHDVAMDFYGKRLATASSDS-SIKIIGLSNSASQHLATLKGHR-GPVWQVAWAHPKFGSILASCSYDGQVIIWKEGNQN   90 (302)
Q Consensus        13 ~v~~~~~s~~~~~l~s~~~d~-~v~lw~~~~~~~~~~~~~~~h~-~~v~~v~~~~~~~~~~l~s~s~D~~i~iwd~~~~~   90 (302)
                      .+++++|+|+++.||.++.+. .|+.|+........+..+.+|. ..|++++|+|..++.+||||+.|++|+|||+....
T Consensus        19 ~~t~l~~~~~~~~la~~~~~~~~i~~~~~~~~~~~~~~~~~gh~~~~v~~v~fsP~~~g~~lasgs~Dg~i~iWd~~~~~   98 (325)
T d1pgua1          19 FTTHLSYDPTTNAIAYPCGKSAFVRCLDDGDSKVPPVVQFTGHGSSVVTTVKFSPIKGSQYLCSGDESGKVIVWGWTFDK   98 (325)
T ss_dssp             CCCCCEEETTTTEEEEEETTEEEEEECCSSCCSSCSEEEECTTTTSCEEEEEECSSTTCCEEEEEETTSEEEEEEEEEEG
T ss_pred             CeEEEEECCCCCEEEEEeCCCEEEEEEeCCCCCccceEEEeCCCCCCEEEEEEeeCCCCCEEEEEeCCCCEEEeeecCCc
Confidence            567889999999999876443 3566665444444566788874 67999999876668899999999999999985432


Q ss_pred             ce-----eEEEEecCCCCCeeEEEecCCCCCcEEEEEe--cCCcEEEEEecCCCCeeeeeecccCCCCeEEEEeCCCCCC
Q 022111           91 DW-----TQAHTFNDHKSSVNSIAWAPHELGLSLACGS--SDGNISVFTATADGGWDTTRIDQAHPVGVTSVSWAPAMAP  163 (302)
Q Consensus        91 ~~-----~~~~~~~~h~~~i~~l~~~pd~~~~~l~sg~--~d~~v~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~  163 (302)
                      ..     .....+..|.++|.+++|+|+  +.++++++  .++.+.+|+..+..  ....+ .+|...|.++.|+|..  
T Consensus        99 ~~~~~~~~~~~~~~~~~~~v~~v~~s~~--~~~l~~~~~~~~~~~~~~~~~~~~--~~~~~-~~h~~~v~~~~~~~~~--  171 (325)
T d1pgua1          99 ESNSVEVNVKSEFQVLAGPISDISWDFE--GRRLCVVGEGRDNFGVFISWDSGN--SLGEV-SGHSQRINACHLKQSR--  171 (325)
T ss_dssp             GGTEEEEEEEEEEECCSSCEEEEEECTT--SSEEEEEECCSSCSEEEEETTTCC--EEEEC-CSCSSCEEEEEECSSS--
T ss_pred             ceeeeecccccccccccCcEEEEEECCC--CCccceeeccccceEEEEeecccc--cceee-eecccccccccccccc--
Confidence            21     122345678999999999998  55666655  46789999876442  22333 3789999999999864  


Q ss_pred             CceeecccCCCceeEEEeeCCCcEEEEEEecCccccccccccccCCCceeEEEeeCCCCCCccEEEEEecCCeEEEEEec
Q 022111          164 GALVGLGLLDPVQKLASCGCDNTVKVWKMYNGIWKMDCFPALQMHSDWVRSVAWAPNLGLPKSTIASASQDGTVVIWTCA  243 (302)
Q Consensus       164 ~~~~~~~~~~~~~~l~s~~~D~~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~l~s~s~D~~i~iwd~~  243 (302)
                                 ..++++++.|+.+++||+...... .....+.+|...|.+++|+|+.   +.+|++++.|+.|++||++
T Consensus       172 -----------~~~~~~~~~d~~v~~~d~~~~~~~-~~~~~~~~~~~~v~~v~~~pd~---~~~l~s~~~d~~i~iwd~~  236 (325)
T d1pgua1         172 -----------PMRSMTVGDDGSVVFYQGPPFKFS-ASDRTHHKQGSFVRDVEFSPDS---GEFVITVGSDRKISCFDGK  236 (325)
T ss_dssp             -----------SCEEEEEETTTEEEEEETTTBEEE-EEECSSSCTTCCEEEEEECSTT---CCEEEEEETTCCEEEEETT
T ss_pred             -----------cceEEEeecccccccccccccccc-eecccccCCCCccEEeeecccc---ceeccccccccceeeeeec
Confidence                       246889999999999998654322 2234556789999999999985   4789999999999999987


Q ss_pred             cCCcceeeeeeccCCCcEEEEEEc---cCCCEEEEecCC-ceEEeeecCCc
Q 022111          244 KEGEQWEGRVLKDFKTPVWSVSWS---LTGNLLAVADAN-NVTLWKEAVDG  290 (302)
Q Consensus       244 ~~~~~~~~~~~~~~~~~v~~~~~s---pdg~~la~~~~d-~i~~w~~~~~~  290 (302)
                      ....   ...+..+..++.++.|+   |||++|++++.| .|+||+.....
T Consensus       237 ~~~~---~~~l~~~~~~v~~~~~s~~~~dg~~l~s~s~D~~i~iwd~~~~~  284 (325)
T d1pgua1         237 SGEF---LKYIEDDQEPVQGGIFALSWLDSQKFATVGADATIRVWDVTTSK  284 (325)
T ss_dssp             TCCE---EEECCBTTBCCCSCEEEEEESSSSEEEEEETTSEEEEEETTTTE
T ss_pred             cccc---cccccccccccccceeeeeccCCCEEEEEeCCCeEEEEECCCCC
Confidence            5431   12334455554444443   689999999988 79999986433

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.3e-30  Score=216.10  Aligned_cols=237  Identities=19%  Similarity=0.388  Sum_probs=179.4

Q ss_pred             cccccccceeEEEEccCCCEEEEeeCCCcEEEEeecCCCceEEEEecCcccCeEEEEeeCCCCCCEEEEEeCCCeEEEEE
Q 022111            6 IETGHEDTVHDVAMDFYGKRLATASSDSSIKIIGLSNSASQHLATLKGHRGPVWQVAWAHPKFGSILASCSYDGQVIIWK   85 (302)
Q Consensus         6 ~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~s~D~~i~iwd   85 (302)
                      ...+|...|+++.  +|+++||||+.|++|+|||+.+  .+.+.++.+|.+.|++++|.    +++|+||+.|+++++|+
T Consensus        10 ~~~~~~~~V~c~~--~d~~~l~sgs~Dg~i~vWd~~~--~~~~~~l~~H~~~V~~v~~~----~~~l~s~s~D~~i~~~~   81 (293)
T d1p22a2          10 CRSETSKGVYCLQ--YDDQKIVSGLRDNTIKIWDKNT--LECKRILTGHTGSVLCLQYD----ERVIITGSSDSTVRVWD   81 (293)
T ss_dssp             CCCSSCCCEEEEE--CCSSEEEEEESSSCEEEEESSS--CCEEEEECCCSSCEEEEECC----SSEEEEEETTSCEEEEE
T ss_pred             ccCCCCCCEEEEE--EcCCEEEEEeCCCeEEEEECCC--CcEEEEEecCCCCEeeeecc----cceeecccccccccccc
Confidence            3567888998754  6799999999999999999865  45678899999999999873    67999999999999999


Q ss_pred             cCCCCc----------------------------------------eeEEEEecCCCCCeeEEEecCCCCCcEEEEEecC
Q 022111           86 EGNQND----------------------------------------WTQAHTFNDHKSSVNSIAWAPHELGLSLACGSSD  125 (302)
Q Consensus        86 ~~~~~~----------------------------------------~~~~~~~~~h~~~i~~l~~~pd~~~~~l~sg~~d  125 (302)
                      +.....                                        ......+..|...|..+.+.+.    .+++++.|
T Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~----~~~~~s~d  157 (293)
T d1p22a2          82 VNTGEMLNTLIHHCEAVLHLRFNNGMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFDDK----YIVSASGD  157 (293)
T ss_dssp             SSSCCEEEEECCCCSCEEEEECCTTEEEEEETTSCEEEEECSSSSCCEEEEEECCCSSCEEEEEEETT----EEEEEETT
T ss_pred             cccccccccccccccccccccccccceeecccccceeEeeccccccccccccccccccccccceeccc----ccccccCC
Confidence            864321                                        0012234557777777777653    68889999


Q ss_pred             CcEEEEEecCCCCeeeeeecccCCCCeEEEEeCCCCCCCceeecccCCCceeEEEeeCCCcEEEEEEecCcccccccccc
Q 022111          126 GNISVFTATADGGWDTTRIDQAHPVGVTSVSWAPAMAPGALVGLGLLDPVQKLASCGCDNTVKVWKMYNGIWKMDCFPAL  205 (302)
Q Consensus       126 ~~v~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~D~~v~iwd~~~~~~~~~~~~~~  205 (302)
                      +.+++|+.+....  ...+. ++...+..+.+++                ..+++++.|+.|++||+++.    ..+..+
T Consensus       158 ~~i~~~d~~~~~~--~~~~~-~~~~~v~~~~~~~----------------~~l~~~~~dg~i~i~d~~~~----~~~~~~  214 (293)
T d1p22a2         158 RTIKVWNTSTCEF--VRTLN-GHKRGIACLQYRD----------------RLVVSGSSDNTIRLWDIECG----ACLRVL  214 (293)
T ss_dssp             SEEEEEETTTCCE--EEEEE-CCSSCEEEEEEET----------------TEEEEEETTSCEEEEETTTC----CEEEEE
T ss_pred             CceeeecCCCCcE--EEEEc-ccccccccccCCC----------------CeEEEecCCCEEEEEecccc----eeeeee
Confidence            9999999875432  22332 6667777776653                57999999999999999875    344566


Q ss_pred             ccCCCceeEEEeeCCCCCCccEEEEEecCCeEEEEEeccCCcc------eeeeeeccCCCcEEEEEEccCCCEEEEecCC
Q 022111          206 QMHSDWVRSVAWAPNLGLPKSTIASASQDGTVVIWTCAKEGEQ------WEGRVLKDFKTPVWSVSWSLTGNLLAVADAN  279 (302)
Q Consensus       206 ~~h~~~v~~v~~~p~~~~~~~~l~s~s~D~~i~iwd~~~~~~~------~~~~~~~~~~~~v~~~~~spdg~~la~~~~d  279 (302)
                      .+|...|.++.+  +    +..|++|+.|+.|++||+......      .....+.+|..+|++++|  ++++|++++.|
T Consensus       215 ~~~~~~v~~~~~--~----~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~H~~~V~~v~~--d~~~l~s~s~D  286 (293)
T d1p22a2         215 EGHEELVRCIRF--D----NKRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQF--DEFQIVSSSHD  286 (293)
T ss_dssp             CCCSSCEEEEEC--C----SSEEEEEETTSCEEEEEHHHHTSTTSCTTTTEEEEECCCSSCCCCEEE--CSSCEEECCSS
T ss_pred             cccceeeeeccc--c----ceEEEEEcCCCEEEEEECCCCccccccCCceeeEEecCCCCCEEEEEE--cCCEEEEEecC
Confidence            778888876544  4    367999999999999998643211      112334678889999998  46789999998


Q ss_pred             -ceEEee
Q 022111          280 -NVTLWK  285 (302)
Q Consensus       280 -~i~~w~  285 (302)
                       .|++||
T Consensus       287 g~i~iWD  293 (293)
T d1p22a2         287 DTILIWD  293 (293)
T ss_dssp             SEEEEEC
T ss_pred             CEEEEeC
Confidence             799997

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.98  E-value=6.9e-31  Score=221.14  Aligned_cols=242  Identities=14%  Similarity=0.186  Sum_probs=175.8

Q ss_pred             cccccccccceeEEEEccCCCEEEEeeCCCcEEEEeecCCCceEEEEecCcccCeEEEEeeCCCCCCEEEEEeCCCeEEE
Q 022111            4 QKIETGHEDTVHDVAMDFYGKRLATASSDSSIKIIGLSNSASQHLATLKGHRGPVWQVAWAHPKFGSILASCSYDGQVII   83 (302)
Q Consensus         4 ~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~s~D~~i~i   83 (302)
                      .+++.||.++|++++|+|    |+||+.||+|++||+..       ...+|...|.++.+++   +..+++++.|+++++
T Consensus         6 i~~l~gH~~~I~~l~~s~----l~sgs~Dg~v~~Wd~~~-------~~~~h~~~V~~~~~~~---~~~~~s~s~D~~v~~   71 (287)
T d1pgua2           6 LKTISGHNKGITALTVNP----LISGSYDGRIMEWSSSS-------MHQDHSNLIVSLDNSK---AQEYSSISWDDTLKV   71 (287)
T ss_dssp             EEEECCCSSCEEEEETTT----TEEEETTSCEEETTTTE-------EECCCCSCEEEEECCS---TTCCEEEETTTEEEE
T ss_pred             eEEECCCCCceEEEEECc----EEEEeCCCeEEEEECCC-------CCCCCCCCEEEEEecC---CCeEEEEeecccccc
Confidence            457889999999999987    99999999999998742       1357999999999864   457899999999999


Q ss_pred             EEcCCCCc---e----------------------------eEEEEecCCCCCeeEEEecCCCCCcEEEEEecC-CcEEEE
Q 022111           84 WKEGNQND---W----------------------------TQAHTFNDHKSSVNSIAWAPHELGLSLACGSSD-GNISVF  131 (302)
Q Consensus        84 wd~~~~~~---~----------------------------~~~~~~~~h~~~i~~l~~~pd~~~~~l~sg~~d-~~v~~~  131 (302)
                      |++.....   .                            .....+. +...+  .+++|+  +..++.++.+ +.+++|
T Consensus        72 w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~--~~~~~~--~~~~~v~~~~~~~v~~~  146 (287)
T d1pgua2          72 NGITKHEFGSQPKVASANNDGFTAVLTNDDDLLILQSFTGDIIKSVR-LNSPG--SAVSLS--QNYVAVGLEEGNTIQVF  146 (287)
T ss_dssp             TTEEEEECSSCEEEEEECSSSEEEEEETTSEEEEEETTTCCEEEEEE-CSSCE--EEEEEC--SSEEEEEETTTSCEEEE
T ss_pred             ccccccccccceeeeeeccCCceEEEeecccceeeeccceeeeeecc-cccee--eeeecc--Ccceeeeccccceeeee
Confidence            98642110   0                            0011111 12222  344555  3356666555 579999


Q ss_pred             EecCCCCeeeeeecccCCCCeEEEEeCCCCCCCceeecccCCCceeEEEeeCCCcEEEEEEecCccccccccccccCCCc
Q 022111          132 TATADGGWDTTRIDQAHPVGVTSVSWAPAMAPGALVGLGLLDPVQKLASCGCDNTVKVWKMYNGIWKMDCFPALQMHSDW  211 (302)
Q Consensus       132 ~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~D~~v~iwd~~~~~~~~~~~~~~~~h~~~  211 (302)
                      ++....  ........|...+++++|+|++              .+|++|+.|+.|++||+.++..   ....+.+|...
T Consensus       147 ~~~~~~--~~~~~~~~~~~~v~~~~~s~~~--------------~~l~~g~~dg~i~i~d~~~~~~---~~~~~~~h~~~  207 (287)
T d1pgua2         147 KLSDLE--VSFDLKTPLRAKPSYISISPSE--------------TYIAAGDVMGKILLYDLQSREV---KTSRWAFRTSK  207 (287)
T ss_dssp             ETTEEE--EEEECSSCCSSCEEEEEECTTS--------------SEEEEEETTSCEEEEETTTTEE---EECCSCCCSSC
T ss_pred             eccccc--eeeeeeeccCCceeEEEeccCc--------------cccccccccccccceeeccccc---ccccccccccc
Confidence            875321  1122333567789999999864              7899999999999999977532   12346789999


Q ss_pred             eeEEEeeCCCC------CCccEEEEEecCCeEEEEEeccCCcceeeeeeccCCCcEEEEEEccCCCEEEEecCC-ceEEe
Q 022111          212 VRSVAWAPNLG------LPKSTIASASQDGTVVIWTCAKEGEQWEGRVLKDFKTPVWSVSWSLTGNLLAVADAN-NVTLW  284 (302)
Q Consensus       212 v~~v~~~p~~~------~~~~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~la~~~~d-~i~~w  284 (302)
                      |.+++|+|++.      .++.+|++|+.|++|+|||++....  ....+.+|...|.+++|+|++. |++++.| .|++|
T Consensus       208 v~~~~~~p~~~~~~~~~~~~~~l~sgs~D~~i~iw~~~~~~~--~~~~~~~h~~~V~~v~~~~~~~-l~s~g~D~~v~iW  284 (287)
T d1pgua2         208 INAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPMK--IIKALNAHKDGVNNLLWETPST-LVSSGADACIKRW  284 (287)
T ss_dssp             EEEEEECCCC------CCSCCEEEEEETTSCEEEEESSCTTC--CEEETTSSTTCEEEEEEEETTE-EEEEETTSCEEEE
T ss_pred             cceeeecccccccccccCCCCeeEeecCCCeEEEEECCCCCe--EEEEeCCCCCCeEEEEECCCCE-EEEEECCCeEEEE
Confidence            99999999753      2457899999999999999875432  2234567889999999999875 5666677 79999


Q ss_pred             ee
Q 022111          285 KE  286 (302)
Q Consensus       285 ~~  286 (302)
                      ++
T Consensus       285 ~i  286 (287)
T d1pgua2         285 NV  286 (287)
T ss_dssp             EE
T ss_pred             EE
Confidence            85

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=99.97  E-value=7.6e-30  Score=215.80  Aligned_cols=229  Identities=19%  Similarity=0.195  Sum_probs=170.3

Q ss_pred             eEEEEecCcccCeEEEEeeCCCCCCEEEEEeCCCeEEEEEcCCCCceeEEEEe-cCCCCCeeEEEecCCCCCcEEEEEec
Q 022111           46 QHLATLKGHRGPVWQVAWAHPKFGSILASCSYDGQVIIWKEGNQNDWTQAHTF-NDHKSSVNSIAWAPHELGLSLACGSS  124 (302)
Q Consensus        46 ~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~s~D~~i~iwd~~~~~~~~~~~~~-~~h~~~i~~l~~~pd~~~~~l~sg~~  124 (302)
                      +..+.+.||.+.|++|+|+|+  +++|+||+.|++|++||++++.   +...+ ..|...|.+++|+|+  +. +++++.
T Consensus         3 ~~~~~~~GH~~~V~~l~~s~d--g~~l~s~s~Dg~v~vWd~~~~~---~~~~~~~~h~~~v~~v~~~~~--g~-~~~~~~   74 (299)
T d1nr0a2           3 SIDQVRYGHNKAITALSSSAD--GKTLFSADAEGHINSWDISTGI---SNRVFPDVHATMITGIKTTSK--GD-LFTVSW   74 (299)
T ss_dssp             EEEEEECCCSSCEEEEEECTT--SSEEEEEETTSCEEEEETTTCC---EEECSSCSCSSCEEEEEECTT--SC-EEEEET
T ss_pred             ccceEcCCCCCCcEEEEECCC--CCEEEEEcCCCeEEEEECCCCc---EEEEEcCCCCCcEEEEEeecc--ce-eecccc
Confidence            445678999999999999864  8999999999999999997753   44555 468999999999997  44 667788


Q ss_pred             CCcEEEEEecCCCCeeeeeecccCCCCeEEEEeCCCCCCCc--------e---------------eecccCCCceeEEEe
Q 022111          125 DGNISVFTATADGGWDTTRIDQAHPVGVTSVSWAPAMAPGA--------L---------------VGLGLLDPVQKLASC  181 (302)
Q Consensus       125 d~~v~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~--------~---------------~~~~~~~~~~~l~s~  181 (302)
                      |+.+++|+...............+...+.++.|+|++....        +               ..+...+++..|++|
T Consensus        75 d~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g  154 (299)
T d1nr0a2          75 DDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAACYKHIAIYSHGKLTEVPISYNSSCVALSNDKQFVAVG  154 (299)
T ss_dssp             TTEEEEECSSSSSSCTTSCCEEECSSCEEEEEECTTSSCEEEEESSEEEEEETTEEEEEECSSCEEEEEECTTSCEEEEE
T ss_pred             eeeEEEeccCCccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            99999998754321111111124566678888887653110        0               011123457889999


Q ss_pred             eCCCcEEEEEEecCccccccccccccCCCceeEEEeeCCCCCCccEEEEEecCCeEEEEEeccCCcceeeeeeccCCCcE
Q 022111          182 GCDNTVKVWKMYNGIWKMDCFPALQMHSDWVRSVAWAPNLGLPKSTIASASQDGTVVIWTCAKEGEQWEGRVLKDFKTPV  261 (302)
Q Consensus       182 ~~D~~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~~~~~v  261 (302)
                      +.|+.|++||+.+....   ......|...|++++|+|++    ..|++++.|+.|++||+..............|..+|
T Consensus       155 ~~dg~i~~~d~~~~~~~---~~~~~~~~~~i~~~~~~~~~----~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~h~~~v  227 (299)
T d1nr0a2         155 GQDSKVHVYKLSGASVS---EVKTIVHPAEITSVAFSNNG----AFLVATDQSRKVIPYSVANNFELAHTNSWTFHTAKV  227 (299)
T ss_dssp             ETTSEEEEEEEETTEEE---EEEEEECSSCEEEEEECTTS----SEEEEEETTSCEEEEEGGGTTEESCCCCCCCCSSCE
T ss_pred             ccccccccccccccccc---cccccccccccccccccccc----cccccccccccccccccccccccccccccccccccc
Confidence            99999999999875311   11234689999999999985    789999999999999987643222222335677899


Q ss_pred             EEEEEccCCCEEEEecCC-ceEEeeecCC
Q 022111          262 WSVSWSLTGNLLAVADAN-NVTLWKEAVD  289 (302)
Q Consensus       262 ~~~~~spdg~~la~~~~d-~i~~w~~~~~  289 (302)
                      .+++|+|+|++|++++.| .|++|+....
T Consensus       228 ~~l~~s~~~~~l~sgs~dg~i~iwd~~~~  256 (299)
T d1nr0a2         228 ACVSWSPDNVRLATGSLDNSVIVWNMNKP  256 (299)
T ss_dssp             EEEEECTTSSEEEEEETTSCEEEEETTCT
T ss_pred             ccccccccccceEEEcCCCEEEEEECCCC
Confidence            999999999999999988 7999997643

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.97  E-value=1.1e-29  Score=223.93  Aligned_cols=261  Identities=14%  Similarity=0.152  Sum_probs=176.7

Q ss_pred             ccccccceeEEEEccCCCEEEEeeCCCcEEEEeecCCCc----eEEEEecCcccCeEEEEee-----CCCCCCEEEEEeC
Q 022111            7 ETGHEDTVHDVAMDFYGKRLATASSDSSIKIIGLSNSAS----QHLATLKGHRGPVWQVAWA-----HPKFGSILASCSY   77 (302)
Q Consensus         7 ~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~lw~~~~~~~----~~~~~~~~h~~~v~~v~~~-----~~~~~~~l~s~s~   77 (302)
                      ..+|++.|++++++  +++|+|+|.|++|+|||......    ........|...+..+...     ......++++++.
T Consensus        10 ~~~H~~~I~~v~~~--~~~l~S~S~D~~iriWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~   87 (393)
T d1sq9a_          10 GKAHDADIFSVSAC--NSFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQAIERDAFELCLVATTSF   87 (393)
T ss_dssp             SSCSSSCEEEEEEC--SSEEEEEETTSEEEEEESBCCTTCCGGGGEEEEECCTTCEEEEEEEEEEETTTEEEEEEEEEET
T ss_pred             CCcccCccEEEEEe--CCEEEEEECCCeEEEEECCCCCCCcccceeEeeeeccCCceEeeeEeeeccCCCCCcEEEEEeC
Confidence            56999999999876  47999999999999999743221    1122233444443332221     1112357889999


Q ss_pred             CCeEEEEEcCCCCceeEE--EE-----ecCCCCCeeEEEecCCC---CCcEEEEEecCCcEEEEEecCCCCe--------
Q 022111           78 DGQVIIWKEGNQNDWTQA--HT-----FNDHKSSVNSIAWAPHE---LGLSLACGSSDGNISVFTATADGGW--------  139 (302)
Q Consensus        78 D~~i~iwd~~~~~~~~~~--~~-----~~~h~~~i~~l~~~pd~---~~~~l~sg~~d~~v~~~~~~~~~~~--------  139 (302)
                      |+++++|++.........  ..     ...+...+..++|.++.   .+.++++++.|+++++|++......        
T Consensus        88 dg~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~vw~~~~~~~~~~~~~~~~  167 (393)
T d1sq9a_          88 SGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSLTLNW  167 (393)
T ss_dssp             TSCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEESSSSHHHHTTTCC
T ss_pred             CCcEEEEEccCCCceeeeeccccceeeeccCCCceEEEEEecCCCcccccEEEEEcCCCcEEEEEeecCCcccceeeeee
Confidence            999999997543221111  11     12244567788887653   2467999999999999998532210        


Q ss_pred             ----ee---eeecccCCCCeEEEEeCCCCCCCceeecccCCCceeEEEeeCCCcEEEEEEecCcc--ccccccccccCCC
Q 022111          140 ----DT---TRIDQAHPVGVTSVSWAPAMAPGALVGLGLLDPVQKLASCGCDNTVKVWKMYNGIW--KMDCFPALQMHSD  210 (302)
Q Consensus       140 ----~~---~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~D~~v~iwd~~~~~~--~~~~~~~~~~h~~  210 (302)
                          ..   ......+...+.+++|+|+               .+||+|+.|++|+|||+.++..  .+.....+.+|..
T Consensus       168 ~~~~~~~~~~~~~~~~~~~~~~v~~s~d---------------g~lasgs~Dg~i~iwd~~~~~~~~~~~~~~~l~~h~~  232 (393)
T d1sq9a_         168 SPTLELQGTVESPMTPSQFATSVDISER---------------GLIATGFNNGTVQISELSTLRPLYNFESQHSMINNSN  232 (393)
T ss_dssp             CCEEEEEEEECCSSSSCCCCCEEEECTT---------------SEEEEECTTSEEEEEETTTTEEEEEEECCC---CCCC
T ss_pred             ccceecccceecccCCCCcEEEEEECCC---------------CEEEEEeCCCcEEEEeecccccccccccccccccccc
Confidence                00   0011123344677777764               4799999999999999987642  2233456778999


Q ss_pred             ceeEEEeeCCCCCCccEEEEEecCCe---EEEEEeccCCccee----------eeeeccCCCcEEEEEEccCCCEEEEec
Q 022111          211 WVRSVAWAPNLGLPKSTIASASQDGT---VVIWTCAKEGEQWE----------GRVLKDFKTPVWSVSWSLTGNLLAVAD  277 (302)
Q Consensus       211 ~v~~v~~~p~~~~~~~~l~s~s~D~~---i~iwd~~~~~~~~~----------~~~~~~~~~~v~~~~~spdg~~la~~~  277 (302)
                      +|++|+|+|++    ++|++|+.|++   |++||++.......          .....+|...|++++|+|||++|++++
T Consensus       233 ~V~~l~~spdg----~~l~sgs~D~t~~~i~lwd~~~g~~~~~l~~~~~~~~~~~~~~gH~~~V~~l~fspd~~~l~S~s  308 (393)
T d1sq9a_         233 SIRSVKFSPQG----SLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAG  308 (393)
T ss_dssp             CEEEEEECSST----TEEEEEEEETTEEEEEEEETTTCCEEEEECBC--------CCBSBSSCEEEEEECSSSSEEEEEE
T ss_pred             eEEEccccccc----ceeeeecCCCCcceeeecccccceeeeeeccccccccceeeeecccCceeeeccCCCCCeeEEEC
Confidence            99999999995    78999999974   99999875421110          111246888999999999999999999


Q ss_pred             CC-ceEEeeecC
Q 022111          278 AN-NVTLWKEAV  288 (302)
Q Consensus       278 ~d-~i~~w~~~~  288 (302)
                      .| .|++||...
T Consensus       309 ~D~~v~vWd~~~  320 (393)
T d1sq9a_         309 WDGKLRFWDVKT  320 (393)
T ss_dssp             TTSEEEEEETTT
T ss_pred             CCCEEEEEECCC
Confidence            99 799999864

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.97  E-value=1.1e-29  Score=216.14  Aligned_cols=270  Identities=15%  Similarity=0.107  Sum_probs=184.3

Q ss_pred             CcccccccccceeEEEEccCCCEEEEeeCCCcEEEEeecCCCc-eEEEEecCcccCeEEEEeeCCCCCCEEEEEeCCCeE
Q 022111            3 AQKIETGHEDTVHDVAMDFYGKRLATASSDSSIKIIGLSNSAS-QHLATLKGHRGPVWQVAWAHPKFGSILASCSYDGQV   81 (302)
Q Consensus         3 ~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~lw~~~~~~~-~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~s~D~~i   81 (302)
                      ..++.++|++.|++|+|+|++++||+|+.|++|+|||+..... ..+....+|.++|.+++|+++ .+.+|++|+.|+++
T Consensus         3 ~v~~~~~h~d~I~~l~fsp~~~~L~s~s~Dg~v~iwd~~~~~~~~~~~~~~~h~~~V~~v~f~~~-~~~~l~sg~~d~~v   81 (342)
T d1yfqa_           3 IVQIEQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDN-TDLQIYVGTVQGEI   81 (342)
T ss_dssp             EEECSSCCSSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEES-SSEEEEEEETTSCE
T ss_pred             eEEcCCCCCCCEEEEEEeCCCCEEEEEECCCeEEEEEccCCCcceEEEEecCCCCCEEEEEEeCC-CCCEEEEcccccce
Confidence            4567889999999999999999999999999999999965432 233344579999999999865 36789999999999


Q ss_pred             EEEEcCCCCceeEEEEecCCC-CCeeEEEecCCCCCcEEEEEecCCcEEEEEecCCCCeeee-eecccCC--CCeEEEEe
Q 022111           82 IIWKEGNQNDWTQAHTFNDHK-SSVNSIAWAPHELGLSLACGSSDGNISVFTATADGGWDTT-RIDQAHP--VGVTSVSW  157 (302)
Q Consensus        82 ~iwd~~~~~~~~~~~~~~~h~-~~i~~l~~~pd~~~~~l~sg~~d~~v~~~~~~~~~~~~~~-~~~~~h~--~~v~~~~~  157 (302)
                      ++|++.....   ......+. .......+.++  ...+++++.++.+++||++........ .....+.  .......+
T Consensus        82 ~~w~~~~~~~---~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~  156 (342)
T d1yfqa_          82 LKVDLIGSPS---FQALTNNEANLGICRICKYG--DDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTKVKNKIFTM  156 (342)
T ss_dssp             EEECSSSSSS---EEECBSCCCCSCEEEEEEET--TTEEEEEETTSEEEEECHHHHTTBCEEEEESCSSSSSSCCCEEEE
T ss_pred             eeeecccccc---cccccccccccccccccccc--cccccccccccccceeeccccccceeeecccccccccceeeeeee
Confidence            9999876542   22233333 33344444554  458999999999999998643221111 1111111  11222222


Q ss_pred             CCCCCCCceeecccCCCceeEEEeeCCCcEEEEEEecCccccccccccccCCCceeEEEeeCCCCCCccEEEEEecCCeE
Q 022111          158 APAMAPGALVGLGLLDPVQKLASCGCDNTVKVWKMYNGIWKMDCFPALQMHSDWVRSVAWAPNLGLPKSTIASASQDGTV  237 (302)
Q Consensus       158 ~~~~~~~~~~~~~~~~~~~~l~s~~~D~~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~l~s~s~D~~i  237 (302)
                      .+.              +..+++++.|+.|++||+........ ......+...+.++.+.|..   +..+++++.|+.+
T Consensus       157 ~~~--------------~~~~~~~~~d~~i~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~---~~~~~~~s~dg~~  218 (342)
T d1yfqa_         157 DTN--------------SSRLIVGMNNSQVQWFRLPLCEDDNG-TIEESGLKYQIRDVALLPKE---QEGYACSSIDGRV  218 (342)
T ss_dssp             EEC--------------SSEEEEEESTTEEEEEESSCCTTCCC-EEEECSCSSCEEEEEECSGG---GCEEEEEETTSEE
T ss_pred             ecc--------------CCceeeecCCCcEEEEecccCcccce-eeeecccccceeeeEeecCC---CCEEEeecCCCeE
Confidence            222              36799999999999999876532211 11223455567777776653   4789999999999


Q ss_pred             EEEEeccCCccee------ee------eeccCCCcEEEEEEccCCCEEEEecCC-ceEEeeecCCceEEEee
Q 022111          238 VIWTCAKEGEQWE------GR------VLKDFKTPVWSVSWSLTGNLLAVADAN-NVTLWKEAVDGEWQQVS  296 (302)
Q Consensus       238 ~iwd~~~~~~~~~------~~------~~~~~~~~v~~~~~spdg~~la~~~~d-~i~~w~~~~~~~~~~~~  296 (302)
                      .+|+.........      ..      ....+...+.+++|+|++++||+|+.| .|++||.........+.
T Consensus       219 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~lasg~~Dg~v~vWD~~~~~~l~~~~  290 (342)
T d1yfqa_         219 AVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNFA  290 (342)
T ss_dssp             EEEECCTTCCSTTCTTCEEEECCCCCTTCCSSCCCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEECC
T ss_pred             EEEEecCCcceeeccccceeeeeeeccCCCcccccceeEEecCCccEEEEECCCCEEEEEECCCCcEEEEec
Confidence            9999865321110      00      012344578999999999999999999 69999986544444443

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.97  E-value=9e-29  Score=211.40  Aligned_cols=228  Identities=24%  Similarity=0.426  Sum_probs=168.2

Q ss_pred             eEEEEecCcccCeEEEEeeCCCCCCEEEEEeCCCeEEEEEcCCCCceeEEEEecCCCCCeeEEEecCCCCCcEEEEEecC
Q 022111           46 QHLATLKGHRGPVWQVAWAHPKFGSILASCSYDGQVIIWKEGNQNDWTQAHTFNDHKSSVNSIAWAPHELGLSLACGSSD  125 (302)
Q Consensus        46 ~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~h~~~i~~l~~~pd~~~~~l~sg~~d  125 (302)
                      +...+|.||.+.|++|+|+++  +++||||+.||+|+|||+.+.   ..+..+..|..+|.+++|+|+  +.++++|+.|
T Consensus        46 ~~~~tL~GH~~~I~~l~~s~~--~~~l~sgs~Dg~v~iWd~~~~---~~~~~~~~~~~~v~~v~~~~~--~~~l~~~~~d  118 (340)
T d1tbga_          46 RTRRTLRGHLAKIYAMHWGTD--SRLLVSASQDGKLIIWDSYTT---NKVHAIPLRSSWVMTCAYAPS--GNYVACGGLD  118 (340)
T ss_dssp             CEEEEECCCSSCEEEEEECTT--SSEEEEEETTTEEEEEETTTT---EEEEEEECSCSCEEEEEECTT--SSEEEEEETT
T ss_pred             eeeEEECCCCCCEEEEEECCC--CCEEEEEECCCceeeeecccc---eeEEEEecccccEEeeEeecc--ceeeeeeccc
Confidence            345789999999999999864  789999999999999999765   467788889999999999998  6799999999


Q ss_pred             CcEEEEEecCCCCe-ee-eeecccCCCCeEEEEeCCCCC---------------------------CCceeecccCCCce
Q 022111          126 GNISVFTATADGGW-DT-TRIDQAHPVGVTSVSWAPAMA---------------------------PGALVGLGLLDPVQ  176 (302)
Q Consensus       126 ~~v~~~~~~~~~~~-~~-~~~~~~h~~~v~~~~~~~~~~---------------------------~~~~~~~~~~~~~~  176 (302)
                      +.+++|+....... .. ..+ .+|........+.....                           ..........+...
T Consensus       119 ~~i~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  197 (340)
T d1tbga_         119 NICSIYNLKTREGNVRVSREL-AGHTGYLSCCRFLDDNQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTR  197 (340)
T ss_dssp             CCEEEEESSSSCSCCCEEEEE-CCCSSCEEEEEEEETTEEEEEETTTEEEEEETTTTEEEEEEECCSSCEEEEEECTTSS
T ss_pred             ceeecccccccccccccceec-ccccccccccccccccccccccccccccccccccccccccccccceeEeeeccccccc
Confidence            99999987543211 11 111 13333222222111100                           00001111223456


Q ss_pred             eEEEeeCCCcEEEEEEecCccccccccccccCCCceeEEEeeCCCCCCccEEEEEecCCeEEEEEeccCCcceeeeeecc
Q 022111          177 KLASCGCDNTVKVWKMYNGIWKMDCFPALQMHSDWVRSVAWAPNLGLPKSTIASASQDGTVVIWTCAKEGEQWEGRVLKD  256 (302)
Q Consensus       177 ~l~s~~~D~~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~  256 (302)
                      .+++++.|+.|++||++++    .+...+.+|.+.|++++|+|++    ..|++|+.|+.|++||++...... ......
T Consensus       198 ~~~~~~~d~~v~i~d~~~~----~~~~~~~~h~~~i~~v~~~p~~----~~l~s~s~d~~i~~~~~~~~~~~~-~~~~~~  268 (340)
T d1tbga_         198 LFVSGACDASAKLWDVREG----MCRQTFTGHESDINAICFFPNG----NAFATGSDDATCRLFDLRADQELM-TYSHDN  268 (340)
T ss_dssp             EEEEEETTTEEEEEETTTT----EEEEEECCCSSCEEEEEECTTS----SEEEEEETTSCEEEEETTTTEEEE-EECCTT
T ss_pred             eeEEeecCceEEEEECCCC----cEEEEEeCCCCCeEEEEECCCC----CEEEEEeCCCeEEEEeeccccccc-cccccc
Confidence            8999999999999999876    4556788999999999999985    789999999999999997643211 111234


Q ss_pred             CCCcEEEEEEccCCCEEEEecCC-ceEEeeecCCc
Q 022111          257 FKTPVWSVSWSLTGNLLAVADAN-NVTLWKEAVDG  290 (302)
Q Consensus       257 ~~~~v~~~~~spdg~~la~~~~d-~i~~w~~~~~~  290 (302)
                      +..+|.+++|+|+|++|++|+.| .|++|+.....
T Consensus       269 ~~~~i~~~~~s~~~~~l~~g~~dg~i~iwd~~~~~  303 (340)
T d1tbga_         269 IICGITSVSFSKSGRLLLAGYDDFNCNVWDALKAD  303 (340)
T ss_dssp             CCSCEEEEEECSSSCEEEEEETTSCEEEEETTTCC
T ss_pred             ccCceEEEEECCCCCEEEEEECCCEEEEEECCCCc
Confidence            45679999999999999999988 79999976433

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.97  E-value=2.9e-28  Score=205.29  Aligned_cols=203  Identities=28%  Similarity=0.473  Sum_probs=173.3

Q ss_pred             ccccccceeEEEEccCCCEEEEeeCCCcEEEEeecCCCceEEEEecCcccCeEEEEeeCCCCCCEEEEEeCCCeEEEEEc
Q 022111            7 ETGHEDTVHDVAMDFYGKRLATASSDSSIKIIGLSNSASQHLATLKGHRGPVWQVAWAHPKFGSILASCSYDGQVIIWKE   86 (302)
Q Consensus         7 ~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~s~D~~i~iwd~   86 (302)
                      +.+|...+.++.|+++++.+++++.|+.+++|++...  ..+..+.+|...+.+++|+++  +++|++++.|+.+++|+.
T Consensus        97 ~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~--~~~l~~~~~d~~v~~~~~  172 (317)
T d1vyhc1          97 MHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTG--YCVKTFTGHREWVRMVRPNQD--GTLIASCSNDQTVRVWVV  172 (317)
T ss_dssp             CCCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTC--CEEEEEECCSSCEEEEEECTT--SSEEEEEETTSCEEEEET
T ss_pred             cccccccceeeeccCCCceEEeeccCcceeEeecccc--eeeeEEccCCCcceeeecccC--CCEEEEEeCCCeEEEEee
Confidence            5578899999999999999999999999999998653  456778899999999999764  789999999999999998


Q ss_pred             CCCCceeEEEEecCCCCCeeEEEecCCCC------------------CcEEEEEecCCcEEEEEecCCCCeeeeeecccC
Q 022111           87 GNQNDWTQAHTFNDHKSSVNSIAWAPHEL------------------GLSLACGSSDGNISVFTATADGGWDTTRIDQAH  148 (302)
Q Consensus        87 ~~~~~~~~~~~~~~h~~~i~~l~~~pd~~------------------~~~l~sg~~d~~v~~~~~~~~~~~~~~~~~~~h  148 (302)
                      ....   ....+..|...+.++.|+|+..                  +..+++++.|+.|++|+..+..  ....+. +|
T Consensus       173 ~~~~---~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~--~~~~~~-~~  246 (317)
T d1vyhc1         173 ATKE---CKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGM--CLMTLV-GH  246 (317)
T ss_dssp             TTCC---EEEEECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEEEEETTTTE--EEEEEE-CC
T ss_pred             ccce---eeEEEecCCCCceEEEEeeccccceeeccccceeeeeccCCceeEeccCCCEEEEEECCCCc--EEEEEe-CC
Confidence            7653   5677888999999999987531                  3468999999999999987542  233343 78


Q ss_pred             CCCeEEEEeCCCCCCCceeecccCCCceeEEEeeCCCcEEEEEEecCccccccccccccCCCceeEEEeeCCCCCCccEE
Q 022111          149 PVGVTSVSWAPAMAPGALVGLGLLDPVQKLASCGCDNTVKVWKMYNGIWKMDCFPALQMHSDWVRSVAWAPNLGLPKSTI  228 (302)
Q Consensus       149 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~D~~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~l  228 (302)
                      ...|.+++|+|+              +.+|++|+.|+.|+|||+.++    +++..+.+|.+.|++++|+|++    ++|
T Consensus       247 ~~~v~~~~~~~~--------------~~~l~s~~~dg~i~iwd~~~~----~~~~~~~~h~~~V~~~~~s~~~----~~l  304 (317)
T d1vyhc1         247 DNWVRGVLFHSG--------------GKFILSCADDKTLRVWDYKNK----RCMKTLNAHEHFVTSLDFHKTA----PYV  304 (317)
T ss_dssp             SSCEEEEEECSS--------------SSCEEEEETTTEEEEECCTTS----CCCEEEECCSSCEEEEEECSSS----SCE
T ss_pred             CCCEEEEEECCC--------------CCEEEEEECCCeEEEEECCCC----cEEEEEcCCCCCEEEEEEcCCC----CEE
Confidence            889999999986              378999999999999999876    4567788999999999999985    679


Q ss_pred             EEEecCCeEEEEE
Q 022111          229 ASASQDGTVVIWT  241 (302)
Q Consensus       229 ~s~s~D~~i~iwd  241 (302)
                      +||+.|++|+|||
T Consensus       305 ~s~s~Dg~i~iWd  317 (317)
T d1vyhc1         305 VTGSVDQTVKVWE  317 (317)
T ss_dssp             EEEETTSEEEEEC
T ss_pred             EEEeCCCeEEEeC
Confidence            9999999999996

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.96  E-value=1.6e-27  Score=204.07  Aligned_cols=243  Identities=13%  Similarity=0.164  Sum_probs=169.9

Q ss_pred             ccccccccceeEEEEccCCCEEEEeeCCCcEEEEeecCCCceEEEEecCcccCeEEEEeeCCCCCCEEEEEeCCCeEEEE
Q 022111            5 KIETGHEDTVHDVAMDFYGKRLATASSDSSIKIIGLSNSASQHLATLKGHRGPVWQVAWAHPKFGSILASCSYDGQVIIW   84 (302)
Q Consensus         5 ~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~s~D~~i~iw   84 (302)
                      +.+.+|+++|++++|+++ .+|++|+.|++|++|+..............+...+....+.+  ++.++++++.|++|++|
T Consensus        47 ~~l~~H~~~V~~l~~s~~-~~l~s~s~D~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~d~~i~iw  123 (355)
T d1nexb2          47 LQLSGHDGGVWALKYAHG-GILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYK--NIKYIVTGSRDNTLHVW  123 (355)
T ss_dssp             EEEECCSSCEEEEEEETT-TEEEEEETTCCEEEEETTTTEEEEEECCCSSCEEEEEEEEET--TEEEEEEEETTSEEEEE
T ss_pred             EEEECCCCCEEEEEEcCC-CEEEEEeccccccccccccccccccccccccccccccccccc--ccceeeeecCCCcEEEE
Confidence            346789999999999985 589999999999999986543222222222333334444443  36778888888888888


Q ss_pred             EcCCCCc------------------------------------------------------------eeEEEEecCCCCC
Q 022111           85 KEGNQND------------------------------------------------------------WTQAHTFNDHKSS  104 (302)
Q Consensus        85 d~~~~~~------------------------------------------------------------~~~~~~~~~h~~~  104 (302)
                      |++....                                                            ........++...
T Consensus       124 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~  203 (355)
T d1nexb2         124 KLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTVSGHGNIVVSGSYDNTLIVWDVAQMKCLYILSGHTDR  203 (355)
T ss_dssp             ECCC-----------CCCEEESCTTTCTTEEEEEECCSSCEEEEEEETTEEEEEETTSCEEEEETTTTEEEEEECCCSSC
T ss_pred             EccCCceeccccccceeccceeccccccceeeeeeeccccccccccccceeeeecccceeeeeecccccceeeeeccccc
Confidence            8643210                                                            0122344567788


Q ss_pred             eeEEEecCCCCCcEEEEEecCCcEEEEEecCCCCeeeeeecccCCCCeEEEEeCCCCCCCceeecccCCCceeEEEeeCC
Q 022111          105 VNSIAWAPHELGLSLACGSSDGNISVFTATADGGWDTTRIDQAHPVGVTSVSWAPAMAPGALVGLGLLDPVQKLASCGCD  184 (302)
Q Consensus       105 i~~l~~~pd~~~~~l~sg~~d~~v~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~D  184 (302)
                      +.++.|+|+  +..+++++.|+.|++|+.....  ....+ .+|...|.++.|++                +.|++++.|
T Consensus       204 ~~~~~~~~~--~~~~~~~~~d~~i~i~d~~~~~--~~~~~-~~h~~~v~~~~~~~----------------~~l~~~~~d  262 (355)
T d1nexb2         204 IYSTIYDHE--RKRCISASMDTTIRIWDLENGE--LMYTL-QGHTALVGLLRLSD----------------KFLVSAAAD  262 (355)
T ss_dssp             EEEEEEETT--TTEEEEEETTSCEEEEETTTCC--EEEEE-CCCSSCCCEEEECS----------------SEEEEECTT
T ss_pred             ccccccccc--ceeeecccccceEEeeeccccc--ccccc-cccccccccccccc----------------ceeeeeecc
Confidence            889999987  5689999999999999987542  22333 37888999998864                579999999


Q ss_pred             CcEEEEEEecCccccccccccccCCCceeEEEe-eCCCCCCccEEEEEecCCeEEEEEeccCCcceeeeeeccCCCcEEE
Q 022111          185 NTVKVWKMYNGIWKMDCFPALQMHSDWVRSVAW-APNLGLPKSTIASASQDGTVVIWTCAKEGEQWEGRVLKDFKTPVWS  263 (302)
Q Consensus       185 ~~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~~-~p~~~~~~~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~~~~~v~~  263 (302)
                      +.|++||+++..      ..+..|...+.++.+ +|++    ..|++| .|+.|+|||+++...  ......++..+|++
T Consensus       263 g~i~iwd~~~~~------~~~~~~~~~~~~~~~~~~~~----~~l~~g-~d~~i~vwd~~tg~~--~~~~~~~~~~~V~~  329 (355)
T d1nexb2         263 GSIRGWDANDYS------RKFSYHHTNLSAITTFYVSD----NILVSG-SENQFNIYNLRSGKL--VHANILKDADQIWS  329 (355)
T ss_dssp             SEEEEEETTTCC------EEEEEECTTCCCCCEEEECS----SEEEEE-ETTEEEEEETTTCCB--CCSCTTTTCSEEEE
T ss_pred             cccccccccccc------eecccccCCceEEEEEcCCC----CEEEEE-eCCEEEEEECCCCCE--EEEEecCCCCCEEE
Confidence            999999987652      234567777777655 5553    455554 589999999976432  11234567789999


Q ss_pred             EEEccCCCEEEEecCC-ceEEee
Q 022111          264 VSWSLTGNLLAVADAN-NVTLWK  285 (302)
Q Consensus       264 ~~~spdg~~la~~~~d-~i~~w~  285 (302)
                      ++|+|+ .++++++.| .+.||.
T Consensus       330 v~~~~~-~~~~~~s~dg~~~l~~  351 (355)
T d1nexb2         330 VNFKGK-TLVAAVEKDGQSFLEI  351 (355)
T ss_dssp             EEEETT-EEEEEEESSSCEEEEE
T ss_pred             EEEcCC-eEEEEEECCCcEEEEE
Confidence            999987 467777777 555553

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.95  E-value=1e-26  Score=204.75  Aligned_cols=202  Identities=17%  Similarity=0.245  Sum_probs=143.0

Q ss_pred             CCEEEEeeCCCcEEEEeecCCCc-eE-----EEE--ecCcccCeEEEEeeCCC---CCCEEEEEeCCCeEEEEEcCCCCc
Q 022111           23 GKRLATASSDSSIKIIGLSNSAS-QH-----LAT--LKGHRGPVWQVAWAHPK---FGSILASCSYDGQVIIWKEGNQND   91 (302)
Q Consensus        23 ~~~l~s~~~d~~v~lw~~~~~~~-~~-----~~~--~~~h~~~v~~v~~~~~~---~~~~l~s~s~D~~i~iwd~~~~~~   91 (302)
                      +..+++++.|++|++|++..... ..     ...  ...+...++.++|....   .+.++++++.|+++++|++.....
T Consensus        79 ~~~~~s~~~dg~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~vw~~~~~~~  158 (393)
T d1sq9a_          79 LCLVATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFAD  158 (393)
T ss_dssp             EEEEEEEETTSCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEESSSS
T ss_pred             CcEEEEEeCCCcEEEEEccCCCceeeeeccccceeeeccCCCceEEEEEecCCCcccccEEEEEcCCCcEEEEEeecCCc
Confidence            35788999999999999753221 11     111  12356677888886532   246899999999999999743211


Q ss_pred             ------------e---eEEEEecCCCCCeeEEEecCCCCCcEEEEEecCCcEEEEEecCCCCeeee---eecccCCCCeE
Q 022111           92 ------------W---TQAHTFNDHKSSVNSIAWAPHELGLSLACGSSDGNISVFTATADGGWDTT---RIDQAHPVGVT  153 (302)
Q Consensus        92 ------------~---~~~~~~~~h~~~i~~l~~~pd~~~~~l~sg~~d~~v~~~~~~~~~~~~~~---~~~~~h~~~v~  153 (302)
                                  .   ........+...+.+++|+|+  + +||+|+.|++|++||+.+.......   ....+|...|.
T Consensus       159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~d--g-~lasgs~Dg~i~iwd~~~~~~~~~~~~~~~l~~h~~~V~  235 (393)
T d1sq9a_         159 ESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISER--G-LIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIR  235 (393)
T ss_dssp             HHHHTTTCCCCEEEEEEEECCSSSSCCCCCEEEECTT--S-EEEEECTTSEEEEEETTTTEEEEEEECCC---CCCCCEE
T ss_pred             ccceeeeeeccceecccceecccCCCCcEEEEEECCC--C-EEEEEeCCCcEEEEeecccccccccccccccccccceEE
Confidence                        0   011122345677899999997  4 7999999999999998754322211   11236888999


Q ss_pred             EEEeCCCCCCCceeecccCCCceeEEEeeCCCc---EEEEEEecCccc---------cccccccccCCCceeEEEeeCCC
Q 022111          154 SVSWAPAMAPGALVGLGLLDPVQKLASCGCDNT---VKVWKMYNGIWK---------MDCFPALQMHSDWVRSVAWAPNL  221 (302)
Q Consensus       154 ~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~D~~---v~iwd~~~~~~~---------~~~~~~~~~h~~~v~~v~~~p~~  221 (302)
                      +++|+|++              ++|++|+.|++   |++||+.++...         ......+.+|.++|++|+|+|++
T Consensus       236 ~l~~spdg--------------~~l~sgs~D~t~~~i~lwd~~~g~~~~~l~~~~~~~~~~~~~~gH~~~V~~l~fspd~  301 (393)
T d1sq9a_         236 SVKFSPQG--------------SLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSG  301 (393)
T ss_dssp             EEEECSST--------------TEEEEEEEETTEEEEEEEETTTCCEEEEECBC--------CCBSBSSCEEEEEECSSS
T ss_pred             Eccccccc--------------ceeeeecCCCCcceeeecccccceeeeeeccccccccceeeeecccCceeeeccCCCC
Confidence            99999964              79999999875   899998765321         11223456899999999999995


Q ss_pred             CCCccEEEEEecCCeEEEEEeccC
Q 022111          222 GLPKSTIASASQDGTVVIWTCAKE  245 (302)
Q Consensus       222 ~~~~~~l~s~s~D~~i~iwd~~~~  245 (302)
                          ++|+|||.|++|||||+++.
T Consensus       302 ----~~l~S~s~D~~v~vWd~~~g  321 (393)
T d1sq9a_         302 ----ETLCSAGWDGKLRFWDVKTK  321 (393)
T ss_dssp             ----SEEEEEETTSEEEEEETTTT
T ss_pred             ----CeeEEECCCCEEEEEECCCC
Confidence                78999999999999999764

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=99.93  E-value=2.1e-25  Score=192.15  Aligned_cols=246  Identities=7%  Similarity=-0.019  Sum_probs=175.9

Q ss_pred             cccccceeEEEEccCCCEEEEeeCCC--cEEEEeecCCCceEEEEecCcccCeEEEEeeCCCCCCEEEEEeCCCeEEEEE
Q 022111            8 TGHEDTVHDVAMDFYGKRLATASSDS--SIKIIGLSNSASQHLATLKGHRGPVWQVAWAHPKFGSILASCSYDGQVIIWK   85 (302)
Q Consensus         8 ~~h~~~v~~~~~s~~~~~l~s~~~d~--~v~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~s~D~~i~iwd   85 (302)
                      .+|...|.+++|+|||++|++++.+.  .|++|+...+   ....+..|...|.+++|+|+  +++|++++.++.+++|+
T Consensus        39 ~~~~~~v~~~~~spDg~~l~~~~~~~g~~v~v~d~~~~---~~~~~~~~~~~v~~~~~spd--g~~l~~~~~~~~~~~~~  113 (360)
T d1k32a3          39 VPEPLRIRYVRRGGDTKVAFIHGTREGDFLGIYDYRTG---KAEKFEENLGNVFAMGVDRN--GKFAVVANDRFEIMTVD  113 (360)
T ss_dssp             CSCCSCEEEEEECSSSEEEEEEEETTEEEEEEEETTTC---CEEECCCCCCSEEEEEECTT--SSEEEEEETTSEEEEEE
T ss_pred             ccCCCCEEEEEECCCCCEEEEEEcCCCCEEEEEECCCC---cEEEeeCCCceEEeeeeccc--ccccceecccccccccc
Confidence            37999999999999999998877554  7999998653   24567789999999999874  89999999999999999


Q ss_pred             cCCCCceeEEEEecCCCCCeeEEEecCCCCCcEEEEEe----------cCCcEEEEEecCCCCeeeeeecccCCCCeEEE
Q 022111           86 EGNQNDWTQAHTFNDHKSSVNSIAWAPHELGLSLACGS----------SDGNISVFTATADGGWDTTRIDQAHPVGVTSV  155 (302)
Q Consensus        86 ~~~~~~~~~~~~~~~h~~~i~~l~~~pd~~~~~l~sg~----------~d~~v~~~~~~~~~~~~~~~~~~~h~~~v~~~  155 (302)
                      +....   ....+..|...+.+++|+||  |.+|+.+.          .++.+++|+.....   ...+. .+...+..+
T Consensus       114 ~~~~~---~~~~~~~~~~~~~~~~~spd--g~~la~~~~~~~~~~~~~~~~~~~v~d~~~~~---~~~~~-~~~~~~~~~  184 (360)
T d1k32a3         114 LETGK---PTVIERSREAMITDFTISDN--SRFIAYGFPLKHGETDGYVMQAIHVYDMEGRK---IFAAT-TENSHDYAP  184 (360)
T ss_dssp             TTTCC---EEEEEECSSSCCCCEEECTT--SCEEEEEEEECSSTTCSCCEEEEEEEETTTTE---EEECS-CSSSBEEEE
T ss_pred             ccccc---eeeeeecccccccchhhccc--eeeeeeeccccccceeeccccceeeeccccCc---eeeec-ccccccccc
Confidence            97753   44566678899999999998  66777543          34568899876432   12222 455667888


Q ss_pred             EeCCCCCCCceeecccCCCceeEEEeeCCCcEEEEEEecCccc-------------------cc----------------
Q 022111          156 SWAPAMAPGALVGLGLLDPVQKLASCGCDNTVKVWKMYNGIWK-------------------MD----------------  200 (302)
Q Consensus       156 ~~~~~~~~~~~~~~~~~~~~~~l~s~~~D~~v~iwd~~~~~~~-------------------~~----------------  200 (302)
                      .|+|+              ++.|++++.|+.+++||.......                   +.                
T Consensus       185 ~~spd--------------g~~l~~~s~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~  250 (360)
T d1k32a3         185 AFDAD--------------SKNLYYLSYRSLDPSPDRVVLNFSFEVVSKPFVIPLIPGSPNPTKLVPRSMTSEAGEYDLN  250 (360)
T ss_dssp             EECTT--------------SCEEEEEESCCCCCEECSSSSCEECCSCBEEEEEESSTTCCCGGGCCCGGGSCCCCCCCCT
T ss_pred             cccCC--------------CCEEEEEeCCCceEcccccccceeeccccceEEEecccCccccceECCCcCcccccceeec
Confidence            99986              478999999999999985321100                   00                


Q ss_pred             ----cc----------cccccCCCceeEEEeeCCCCCCccEEEEEecCCeEEEEEeccCCcceeeeeeccCCCcEEEEEE
Q 022111          201 ----CF----------PALQMHSDWVRSVAWAPNLGLPKSTIASASQDGTVVIWTCAKEGEQWEGRVLKDFKTPVWSVSW  266 (302)
Q Consensus       201 ----~~----------~~~~~h~~~v~~v~~~p~~~~~~~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~  266 (302)
                          .+          ..+..+.+.+..+.+.+.+ ....++++++.++.|++||+...+       ...+.+.|.+++|
T Consensus       251 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~~~d~~~~~-------~~~~~~~v~~~~~  322 (360)
T d1k32a3         251 DMYKRSSPINVDPGDYRMIIPLESSILIYSVPVHG-EFAAYYQGAPEKGVLLKYDVKTRK-------VTEVKNNLTDLRL  322 (360)
T ss_dssp             TGGGGCEECSCCCBCEEEEEECSSEEEEEECCCCC-SHHHHHHCCCCCEEEEEEETTTCC-------EEEEEEEEEEEEE
T ss_pred             ccccceeecccCcCceeEeeecCCCceEEEEEecC-CCeeEEEecCCCCEEEEEECCCCe-------EEEecCCcCEEEE
Confidence                00          0011122233333333332 112457788889999999987532       1233456899999


Q ss_pred             ccCCCEEEEecCC-ceEEeeecCC
Q 022111          267 SLTGNLLAVADAN-NVTLWKEAVD  289 (302)
Q Consensus       267 spdg~~la~~~~d-~i~~w~~~~~  289 (302)
                      ||||++|++++.| .|++|+....
T Consensus       323 SpDG~~l~~~~~Dg~i~v~d~~~~  346 (360)
T d1k32a3         323 SADRKTVMVRKDDGKIYTFPLEKP  346 (360)
T ss_dssp             CTTSCEEEEEETTSCEEEEESSCT
T ss_pred             CCCCCEEEEEECCCeEEEEECCCC
Confidence            9999999999988 7999998643

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.93  E-value=4.5e-24  Score=180.94  Aligned_cols=252  Identities=13%  Similarity=0.083  Sum_probs=168.6

Q ss_pred             cccccceeEEEEccCC-CEEEEeeCCCcEEEEeecCCCceEEEEecCcccCe-EEEEeeCCCCCCEEEEEeCCCeEEEEE
Q 022111            8 TGHEDTVHDVAMDFYG-KRLATASSDSSIKIIGLSNSASQHLATLKGHRGPV-WQVAWAHPKFGSILASCSYDGQVIIWK   85 (302)
Q Consensus         8 ~~h~~~v~~~~~s~~~-~~l~s~~~d~~v~lw~~~~~~~~~~~~~~~h~~~v-~~v~~~~~~~~~~l~s~s~D~~i~iwd   85 (302)
                      .+|..+|++++|++++ .+|++|+.|++|++|++......  .....+...+ ....+.+  ....+++++.|+++++||
T Consensus        53 ~~h~~~V~~v~f~~~~~~~l~sg~~d~~v~~w~~~~~~~~--~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~wd  128 (342)
T d1yfqa_          53 LRYKHPLLCCNFIDNTDLQIYVGTVQGEILKVDLIGSPSF--QALTNNEANLGICRICKY--GDDKLIAASWDGLIEVID  128 (342)
T ss_dssp             EECSSCEEEEEEEESSSEEEEEEETTSCEEEECSSSSSSE--EECBSCCCCSCEEEEEEE--TTTEEEEEETTSEEEEEC
T ss_pred             cCCCCCEEEEEEeCCCCCEEEEcccccceeeeeccccccc--cccccccccccccccccc--ccccccccccccccceee
Confidence            3799999999999864 58999999999999998654332  2333333333 3333332  367899999999999999


Q ss_pred             cCCCCc-eeEEEEecCC--CCCeeEEEecCCCCCcEEEEEecCCcEEEEEecCCCCeeeeeecccCCCCeEEEEeCCCCC
Q 022111           86 EGNQND-WTQAHTFNDH--KSSVNSIAWAPHELGLSLACGSSDGNISVFTATADGGWDTTRIDQAHPVGVTSVSWAPAMA  162 (302)
Q Consensus        86 ~~~~~~-~~~~~~~~~h--~~~i~~l~~~pd~~~~~l~sg~~d~~v~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~  162 (302)
                      ++.... .........+  ......+.+.++  +..+++++.|+.|++|++..............+.....+..+.+.  
T Consensus       129 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--  204 (342)
T d1yfqa_         129 PRNYGDGVIAVKNLNSNNTKVKNKIFTMDTN--SSRLIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPK--  204 (342)
T ss_dssp             HHHHTTBCEEEEESCSSSSSSCCCEEEEEEC--SSEEEEEESTTEEEEEESSCCTTCCCEEEECSCSSCEEEEEECSG--
T ss_pred             ccccccceeeecccccccccceeeeeeeecc--CCceeeecCCCcEEEEecccCcccceeeeecccccceeeeEeecC--
Confidence            854322 1222222222  233445555555  458999999999999998754332222222234445555555543  


Q ss_pred             CCceeecccCCCceeEEEeeCCCcEEEEEEecCcccc-----------ccccccccCCCceeEEEeeCCCCCCccEEEEE
Q 022111          163 PGALVGLGLLDPVQKLASCGCDNTVKVWKMYNGIWKM-----------DCFPALQMHSDWVRSVAWAPNLGLPKSTIASA  231 (302)
Q Consensus       163 ~~~~~~~~~~~~~~~l~s~~~D~~v~iwd~~~~~~~~-----------~~~~~~~~h~~~v~~v~~~p~~~~~~~~l~s~  231 (302)
                                 ++..+++++.|+.+.+|+........           .......+|...|++|+|+|++    .+||||
T Consensus       205 -----------~~~~~~~~s~dg~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~sp~~----~~lasg  269 (342)
T d1yfqa_         205 -----------EQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRH----KFLYTA  269 (342)
T ss_dssp             -----------GGCEEEEEETTSEEEEEECCTTCCSTTCTTCEEEECCCCCTTCCSSCCCEEEEEECTTT----CCEEEE
T ss_pred             -----------CCCEEEeecCCCeEEEEEecCCcceeeccccceeeeeeeccCCCcccccceeEEecCCc----cEEEEE
Confidence                       24689999999999999986432110           1112335677889999999996    679999


Q ss_pred             ecCCeEEEEEeccCCcceeeeeeccCCCcEEEEEEccCCCEEEEecCC-ceEEeee
Q 022111          232 SQDGTVVIWTCAKEGEQWEGRVLKDFKTPVWSVSWSLTGNLLAVADAN-NVTLWKE  286 (302)
Q Consensus       232 s~D~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~la~~~~d-~i~~w~~  286 (302)
                      +.||.|++||++....  ...+ .. ..++..++|+|+|++|++|++| .+++|..
T Consensus       270 ~~Dg~v~vWD~~~~~~--l~~~-~~-~~~~~~~~~s~~~~~l~~a~sdd~~~~~~~  321 (342)
T d1yfqa_         270 GSDGIISCWNLQTRKK--IKNF-AK-FNEDSVVKIACSDNILCLATSDDTFKTNAA  321 (342)
T ss_dssp             ETTSCEEEEETTTTEE--EEEC-CC-CSSSEEEEEEECSSEEEEEEECTHHHHCSS
T ss_pred             CCCCEEEEEECCCCcE--EEEe-cC-CCCCEEEEEEeCCCEEEEEEcCCcEEEeee
Confidence            9999999999976421  1112 22 2345668889999999988776 6878875

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.93  E-value=6e-24  Score=178.20  Aligned_cols=212  Identities=16%  Similarity=0.237  Sum_probs=148.5

Q ss_pred             ccccccceeEEEEccCCCEEEEeeCCCcEEEEeecCCC----c----------------------------eEEEEecCc
Q 022111            7 ETGHEDTVHDVAMDFYGKRLATASSDSSIKIIGLSNSA----S----------------------------QHLATLKGH   54 (302)
Q Consensus         7 ~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~lw~~~~~~----~----------------------------~~~~~~~~h   54 (302)
                      ..+|...|.++.+++++ .+++++.|+++++|++....    .                            +.+..+. +
T Consensus        42 ~~~h~~~V~~~~~~~~~-~~~s~s~D~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~  119 (287)
T d1pgua2          42 HQDHSNLIVSLDNSKAQ-EYSSISWDDTLKVNGITKHEFGSQPKVASANNDGFTAVLTNDDDLLILQSFTGDIIKSVR-L  119 (287)
T ss_dssp             ECCCCSCEEEEECCSTT-CCEEEETTTEEEETTEEEEECSSCEEEEEECSSSEEEEEETTSEEEEEETTTCCEEEEEE-C
T ss_pred             CCCCCCCEEEEEecCCC-eEEEEeeccccccccccccccccceeeeeeccCCceEEEeecccceeeeccceeeeeecc-c
Confidence            45899999999998754 68899999999999864210    0                            0011111 1


Q ss_pred             ccCeEEEEeeCCCCCCEEEEEeCC-CeEEEEEcCCCCceeEEEEecCCCCCeeEEEecCCCCCcEEEEEecCCcEEEEEe
Q 022111           55 RGPVWQVAWAHPKFGSILASCSYD-GQVIIWKEGNQNDWTQAHTFNDHKSSVNSIAWAPHELGLSLACGSSDGNISVFTA  133 (302)
Q Consensus        55 ~~~v~~v~~~~~~~~~~l~s~s~D-~~i~iwd~~~~~~~~~~~~~~~h~~~i~~l~~~pd~~~~~l~sg~~d~~v~~~~~  133 (302)
                      ...+.  +++++  +..+++++.| +.+++|++....  ........|..++++++|+|+  +.+|++|+.|+.|++||.
T Consensus       120 ~~~~~--~~~~~--~~~~~v~~~~~~~v~~~~~~~~~--~~~~~~~~~~~~v~~~~~s~~--~~~l~~g~~dg~i~i~d~  191 (287)
T d1pgua2         120 NSPGS--AVSLS--QNYVAVGLEEGNTIQVFKLSDLE--VSFDLKTPLRAKPSYISISPS--ETYIAAGDVMGKILLYDL  191 (287)
T ss_dssp             SSCEE--EEEEC--SSEEEEEETTTSCEEEEETTEEE--EEEECSSCCSSCEEEEEECTT--SSEEEEEETTSCEEEEET
T ss_pred             cceee--eeecc--Ccceeeeccccceeeeeeccccc--eeeeeeeccCCceeEEEeccC--ccccccccccccccceee
Confidence            12222  23322  4566666665 579999985432  122223357889999999998  679999999999999998


Q ss_pred             cCCCCeeeeeecccCCCCeEEEEeCCCCCCCceeecccCCCceeEEEeeCCCcEEEEEEecCccccccccccccCCCcee
Q 022111          134 TADGGWDTTRIDQAHPVGVTSVSWAPAMAPGALVGLGLLDPVQKLASCGCDNTVKVWKMYNGIWKMDCFPALQMHSDWVR  213 (302)
Q Consensus       134 ~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~D~~v~iwd~~~~~~~~~~~~~~~~h~~~v~  213 (302)
                      ....  ........|...|.+++|+|......    ....++.+|++|+.|++|+|||+.++.   ..+..+.+|.+.|+
T Consensus       192 ~~~~--~~~~~~~~h~~~v~~~~~~p~~~~~~----~~~~~~~~l~sgs~D~~i~iw~~~~~~---~~~~~~~~h~~~V~  262 (287)
T d1pgua2         192 QSRE--VKTSRWAFRTSKINAISWKPAEKGAN----EEEIEEDLVATGSLDTNIFIYSVKRPM---KIIKALNAHKDGVN  262 (287)
T ss_dssp             TTTE--EEECCSCCCSSCEEEEEECCCC----------CCSCCEEEEEETTSCEEEEESSCTT---CCEEETTSSTTCEE
T ss_pred             cccc--cccccccccccccceeeecccccccc----cccCCCCeeEeecCCCeEEEEECCCCC---eEEEEeCCCCCCeE
Confidence            6432  12222247889999999998642111    112345789999999999999987643   34456789999999


Q ss_pred             EEEeeCCCCCCccEEEEEecCCeEEEEEe
Q 022111          214 SVAWAPNLGLPKSTIASASQDGTVVIWTC  242 (302)
Q Consensus       214 ~v~~~p~~~~~~~~l~s~s~D~~i~iwd~  242 (302)
                      +++|+|+     ..|+|++.|++||+|++
T Consensus       263 ~v~~~~~-----~~l~s~g~D~~v~iW~i  286 (287)
T d1pgua2         263 NLLWETP-----STLVSSGADACIKRWNV  286 (287)
T ss_dssp             EEEEEET-----TEEEEEETTSCEEEEEE
T ss_pred             EEEECCC-----CEEEEEECCCeEEEEEE
Confidence            9999997     35999999999999986

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.92  E-value=1.6e-23  Score=177.97  Aligned_cols=193  Identities=19%  Similarity=0.320  Sum_probs=149.6

Q ss_pred             EccCCCEEEEeeCCCcEEEEeecCCCceEEEEecCcccCeEEEEeeCCCCCCEEEEEeCCCeEEEEEcCCCCceeEEEEe
Q 022111           19 MDFYGKRLATASSDSSIKIIGLSNSASQHLATLKGHRGPVWQVAWAHPKFGSILASCSYDGQVIIWKEGNQNDWTQAHTF   98 (302)
Q Consensus        19 ~s~~~~~l~s~~~d~~v~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~s~D~~i~iwd~~~~~~~~~~~~~   98 (302)
                      .......+++++.|+.|++|+...  ...+..+.+|...+..+.+.    +.+|++++.|++|++||++..   .++..+
T Consensus       143 ~~~~~~~~~~~~~d~~i~~~d~~~--~~~~~~~~~~~~~~~~~~~~----~~~l~s~~~dg~i~~~d~~~~---~~~~~~  213 (342)
T d2ovrb2         143 VQYDGRRVVSGAYDFMVKVWDPET--ETCLHTLQGHTNRVYSLQFD----GIHVVSGSLDTSIRVWDVETG---NCIHTL  213 (342)
T ss_dssp             EEECSSCEEEEETTSCEEEEEGGG--TEEEEEECCCSSCEEEEEEC----SSEEEEEETTSCEEEEETTTC---CEEEEE
T ss_pred             eccccceeeeecCCCeEEEeeccc--ceeeEEEcCcccccccccCC----CCEEEEEeCCCeEEEeecccc---eeeeEe
Confidence            344567888999999999999865  35677888998888777663    689999999999999999765   367788


Q ss_pred             cCCCCCeeEEEecCCCCCcEEEEEecCCcEEEEEecCCCCeeeeeecccCCCCeEEEEeCCCCCCCceeecccCCCceeE
Q 022111           99 NDHKSSVNSIAWAPHELGLSLACGSSDGNISVFTATADGGWDTTRIDQAHPVGVTSVSWAPAMAPGALVGLGLLDPVQKL  178 (302)
Q Consensus        99 ~~h~~~i~~l~~~pd~~~~~l~sg~~d~~v~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~l  178 (302)
                      ..|...+.+++++++    +|++|+.|+.|++|+...............|...+.++.+++                .++
T Consensus       214 ~~~~~~v~~~~~~~~----~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------~~~  273 (342)
T d2ovrb2         214 TGHQSLTSGMELKDN----ILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFNK----------------NFV  273 (342)
T ss_dssp             CCCCSCEEEEEEETT----EEEEEETTSCEEEEETTTCCEEEEECSTTSCSSCEEEEEECS----------------SEE
T ss_pred             cccccceeEEecCCC----EEEEEcCCCEEEEEecccccccccccccceeeeceeecccCC----------------Cee
Confidence            899999999988753    899999999999999875433222222234566777777654                579


Q ss_pred             EEeeCCCcEEEEEEecCccccccc-cccccCCCceeEEEeeCCCCCCccEEEEEecCCe----EEEEEecc
Q 022111          179 ASCGCDNTVKVWKMYNGIWKMDCF-PALQMHSDWVRSVAWAPNLGLPKSTIASASQDGT----VVIWTCAK  244 (302)
Q Consensus       179 ~s~~~D~~v~iwd~~~~~~~~~~~-~~~~~h~~~v~~v~~~p~~~~~~~~l~s~s~D~~----i~iwd~~~  244 (302)
                      ++|+.|++|+|||++++....... ....+|.+.|++++|+|++    ..|++|+.||+    |++||++.
T Consensus       274 ~s~s~Dg~i~iwd~~tg~~i~~~~~~~~~~~~~~v~~v~~s~~~----~~la~g~~dGt~~~~l~~~Df~~  340 (342)
T d2ovrb2         274 ITSSDDGTVKLWDLKTGEFIRNLVTLESGGSGGVVWRIRASNTK----LVCAVGSRNGTEETKLLVLDFDV  340 (342)
T ss_dssp             EEEETTSEEEEEETTTCCEEEEEEECTTGGGTCEEEEEEECSSE----EEEEEECSSSSSCCEEEEEECCC
T ss_pred             EEEcCCCEEEEEECCCCCEEEEEecccCCCCCCCEEEEEECCCC----CEEEEEeCCCCCeeEEEEEeCCC
Confidence            999999999999998764211111 1224688999999999984    78999999986    99999863

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.92  E-value=1.4e-23  Score=174.47  Aligned_cols=199  Identities=24%  Similarity=0.401  Sum_probs=149.2

Q ss_pred             ccccccccceeEEEEccCCCEEEEeeCCCcEEEEeecCCCc---------------------------------------
Q 022111            5 KIETGHEDTVHDVAMDFYGKRLATASSDSSIKIIGLSNSAS---------------------------------------   45 (302)
Q Consensus         5 ~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~lw~~~~~~~---------------------------------------   45 (302)
                      +++.+|++.|++++|  ++++|++|+.|++|++|++.....                                       
T Consensus        49 ~~l~~H~~~V~~v~~--~~~~l~s~s~D~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  126 (293)
T d1p22a2          49 RILTGHTGSVLCLQY--DERVIITGSSDSTVRVWDVNTGEMLNTLIHHCEAVLHLRFNNGMMVTCSKDRSIAVWDMASPT  126 (293)
T ss_dssp             EEECCCSSCEEEEEC--CSSEEEEEETTSCEEEEESSSCCEEEEECCCCSCEEEEECCTTEEEEEETTSCEEEEECSSSS
T ss_pred             EEEecCCCCEeeeec--ccceeecccccccccccccccccccccccccccccccccccccceeecccccceeEeeccccc
Confidence            456789999998875  678999999999999999743211                                       


Q ss_pred             --eEEEEecCcccCeEEEEeeCCCCCCEEEEEeCCCeEEEEEcCCCCceeEEEEecCCCCCeeEEEecCCCCCcEEEEEe
Q 022111           46 --QHLATLKGHRGPVWQVAWAHPKFGSILASCSYDGQVIIWKEGNQNDWTQAHTFNDHKSSVNSIAWAPHELGLSLACGS  123 (302)
Q Consensus        46 --~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~h~~~i~~l~~~pd~~~~~l~sg~  123 (302)
                        .....+..|...|..+.+.    ...+++++.|+.+++||.++..   .+..+.++...+..+.+++    ..+++++
T Consensus       127 ~~~~~~~~~~~~~~v~~~~~~----~~~~~~~s~d~~i~~~d~~~~~---~~~~~~~~~~~v~~~~~~~----~~l~~~~  195 (293)
T d1p22a2         127 DITLRRVLVGHRAAVNVVDFD----DKYIVSASGDRTIKVWNTSTCE---FVRTLNGHKRGIACLQYRD----RLVVSGS  195 (293)
T ss_dssp             CCEEEEEECCCSSCEEEEEEE----TTEEEEEETTSEEEEEETTTCC---EEEEEECCSSCEEEEEEET----TEEEEEE
T ss_pred             cccccccccccccccccceec----ccccccccCCCceeeecCCCCc---EEEEEcccccccccccCCC----CeEEEec
Confidence              0122344566677666664    3578899999999999997653   5667888988999988864    3799999


Q ss_pred             cCCcEEEEEecCCCCeeeeeecccCCCCeEEEEeCCCCCCCceeecccCCCceeEEEeeCCCcEEEEEEecCcc-----c
Q 022111          124 SDGNISVFTATADGGWDTTRIDQAHPVGVTSVSWAPAMAPGALVGLGLLDPVQKLASCGCDNTVKVWKMYNGIW-----K  198 (302)
Q Consensus       124 ~d~~v~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~D~~v~iwd~~~~~~-----~  198 (302)
                      .|++|++||.......  ... ..|...+..+.+.                +..|++|+.|+.|++||+.....     .
T Consensus       196 ~dg~i~i~d~~~~~~~--~~~-~~~~~~v~~~~~~----------------~~~l~sg~~dg~i~iwd~~~~~~~~~~~~  256 (293)
T d1p22a2         196 SDNTIRLWDIECGACL--RVL-EGHEELVRCIRFD----------------NKRIVSGAYDGKIKVWDLVAALDPRAPAG  256 (293)
T ss_dssp             TTSCEEEEETTTCCEE--EEE-CCCSSCEEEEECC----------------SSEEEEEETTSCEEEEEHHHHTSTTSCTT
T ss_pred             CCCEEEEEecccceee--eee-cccceeeeecccc----------------ceEEEEEcCCCEEEEEECCCCccccccCC
Confidence            9999999998754322  222 3566666654432                36899999999999999864321     1


Q ss_pred             cccccccccCCCceeEEEeeCCCCCCccEEEEEecCCeEEEEE
Q 022111          199 MDCFPALQMHSDWVRSVAWAPNLGLPKSTIASASQDGTVVIWT  241 (302)
Q Consensus       199 ~~~~~~~~~h~~~v~~v~~~p~~~~~~~~l~s~s~D~~i~iwd  241 (302)
                      ..++..+.+|.+.|++++|+|      .+|+|+|.|++|+|||
T Consensus       257 ~~~~~~~~~H~~~V~~v~~d~------~~l~s~s~Dg~i~iWD  293 (293)
T d1p22a2         257 TLCLRTLVEHSGRVFRLQFDE------FQIVSSSHDDTILIWD  293 (293)
T ss_dssp             TTEEEEECCCSSCCCCEEECS------SCEEECCSSSEEEEEC
T ss_pred             ceeeEEecCCCCCEEEEEEcC------CEEEEEecCCEEEEeC
Confidence            123456789999999999965      4599999999999997

>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=99.89  E-value=9.2e-22  Score=174.73  Aligned_cols=273  Identities=12%  Similarity=0.046  Sum_probs=164.9

Q ss_pred             cceeEEEEccCCCEEEEeeCCCcEEEEeecCCCceEEE---EecCcccCeEEEEeeCCCCCCEE-EEEeCCCeEEEEEcC
Q 022111           12 DTVHDVAMDFYGKRLATASSDSSIKIIGLSNSASQHLA---TLKGHRGPVWQVAWAHPKFGSIL-ASCSYDGQVIIWKEG   87 (302)
Q Consensus        12 ~~v~~~~~s~~~~~l~s~~~d~~v~lw~~~~~~~~~~~---~~~~h~~~v~~v~~~~~~~~~~l-~s~s~D~~i~iwd~~   87 (302)
                      ..+.+++|||||++|++++.|++|++||+.........   ...+|.+.+.+++|+++  |++| +++..++++++||..
T Consensus        62 ~~~~~vafSPDGk~l~~~~~d~~v~vwd~~t~~~~~~~~i~~~~~~~~~~~s~~~spD--G~~l~v~~~~~~~v~i~d~~  139 (426)
T d1hzua2          62 YAVHISRMSASGRYLLVIGRDARIDMIDLWAKEPTKVAEIKIGIEARSVESSKFKGYE--DRYTIAGAYWPPQFAIMDGE  139 (426)
T ss_dssp             SSEEEEEECTTSCEEEEEETTSEEEEEETTSSSCEEEEEEECCSEEEEEEECCSTTCT--TTEEEEEEEESSEEEEEETT
T ss_pred             CCeeEEEECCCCCEEEEEeCCCCEEEEEccCCceeEEEEEeCCCCCcceEEeeeecCC--CCEEEEeecCCCeEEEEcCC
Confidence            46899999999999999999999999999765433333   33467777777788764  7765 566689999999987


Q ss_pred             CCCceeEEEEecCCCCCeeEEEecCCCCCcEEEEEecCCc-----------EEEEEecCCCCeeeeeecccCCCCeEEEE
Q 022111           88 NQNDWTQAHTFNDHKSSVNSIAWAPHELGLSLACGSSDGN-----------ISVFTATADGGWDTTRIDQAHPVGVTSVS  156 (302)
Q Consensus        88 ~~~~~~~~~~~~~h~~~i~~l~~~pd~~~~~l~sg~~d~~-----------v~~~~~~~~~~~~~~~~~~~h~~~v~~~~  156 (302)
                      ...   +...+..|...+....+.++. ....+..+.|+.           +.+++...........  ..+...+..+.
T Consensus       140 ~~~---~~~~~~~~~~~~~~~~~~~~~-~~~~i~~s~d~~~~~~~~~~~~~i~~~~~~~~~~~~~~~--~~~~~~~~~~~  213 (426)
T d1hzua2         140 TLE---PKQIVSTRGMTVDTQTYHPEP-RVAAIIASHEHPEFIVNVKETGKVLLVNYKDIDNLTVTS--IGAAPFLADGG  213 (426)
T ss_dssp             TCC---EEEEEECCEECSSSCCEESCC-CEEEEEECSSSSEEEEEETTTTEEEEEECSSSSSCEEEE--EECCSSEEEEE
T ss_pred             ccc---eeEEeeccCCCccceeecCCC-ceeEEEECCCCCEEEEecCCCCeEEEEEeccccceeeEE--eccCCccEeee
Confidence            653   344444444434333343331 112233333333           3333322211111111  13445566777


Q ss_pred             eCCCCCCCc------------------eee---cccC-----------CC-c-eeEEEeeCCCcEEEEEEecCccc---c
Q 022111          157 WAPAMAPGA------------------LVG---LGLL-----------DP-V-QKLASCGCDNTVKVWKMYNGIWK---M  199 (302)
Q Consensus       157 ~~~~~~~~~------------------~~~---~~~~-----------~~-~-~~l~s~~~D~~v~iwd~~~~~~~---~  199 (302)
                      ++|++....                  ...   ....           +. + ...++.+.|+.+.+|+.....+.   .
T Consensus       214 ~~~~g~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~~~~~~~~~~~~~~~  293 (426)
T d1hzua2         214 WDSSHRYFMTAANNSNKVAVIDSKDRRLSALVDVGKTPHPGRGANFVHPKYGPVWSTSHLGDGSISLIGTDPKNHPQYAW  293 (426)
T ss_dssp             ECTTSCEEEEEETTCSEEEEEETTTTEEEEEEECSSCCCCSCCEEEEETTTEEEEEEECTTTCEEEEEECCTTTCTTTBT
T ss_pred             ECCCCcEEEeeeecccceeeeecccccEEEEeccCCcccccceeeeecCCCCceEEeccCCCceEEEeeccccccccccc
Confidence            777642100                  000   0000           00 1 12233455788888886554222   2


Q ss_pred             ccccccccCCCceeEEEeeCCCCCCccEEE-------EEecCCeEEEEEeccCCcceee------eeeccCCCcEEEEEE
Q 022111          200 DCFPALQMHSDWVRSVAWAPNLGLPKSTIA-------SASQDGTVVIWTCAKEGEQWEG------RVLKDFKTPVWSVSW  266 (302)
Q Consensus       200 ~~~~~~~~h~~~v~~v~~~p~~~~~~~~l~-------s~s~D~~i~iwd~~~~~~~~~~------~~~~~~~~~v~~~~~  266 (302)
                      +...++.+|...+..++|+|++    .+|+       +++.|++|+|||+.+.......      ..+.++...|++++|
T Consensus       294 ~~~~~l~g~~~~v~~v~~sPdg----~~l~v~~~~~~s~~~~~tv~vwd~~t~~~~~~~~~~~~~~~~~~~~~rv~~~~f  369 (426)
T d1hzua2         294 KKVAELQGQGGGSLFIKTHPKS----SHLYVDTTFNPDARISQSVAVFDLKNLDAKYQVLPIAEWADLGEGAKRVVQPEY  369 (426)
T ss_dssp             SEEEEEECSSSCCCCEECCTTC----SEEEECCTTCSSHHHHTCEEEEETTCTTSCCEEECHHHHHCCCSSCCCEEEEEE
T ss_pred             eEeEEEecCCCceeEEEcCCCC----ceEEEeecCCCCcccCCEEEEEECCCCCcCeEEeccchhcccCCCCccEEEEEE
Confidence            3456778999999999999996    6777       4677999999998764321110      012344566999999


Q ss_pred             ccCCCEEEEe-----cCC-ceEEeeecCCceEEEee
Q 022111          267 SLTGNLLAVA-----DAN-NVTLWKEAVDGEWQQVS  296 (302)
Q Consensus       267 spdg~~la~~-----~~d-~i~~w~~~~~~~~~~~~  296 (302)
                      ||||++|.++     +.+ .|+|||...-+.|...+
T Consensus       370 SpDGk~i~vs~~~~~~~~~~i~v~D~~T~k~~~~i~  405 (426)
T d1hzua2         370 NKRGDEVWFSVWNGKNDSSALVVVDDKTLKLKAVVK  405 (426)
T ss_dssp             CSSSSEEEEEECCCTTSCCEEEEEETTTTEEEEEEC
T ss_pred             CCCCCEEEEEEecCCCCCCeEEEEECCCCeEEEEEC
Confidence            9999977442     234 59999987666665543

>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.87  E-value=1.8e-20  Score=166.83  Aligned_cols=265  Identities=11%  Similarity=-0.041  Sum_probs=159.7

Q ss_pred             cceeEEEEccCCCEEEEeeCCCcEEEEeecCCCceE---EEEecCcccCeEEEEeeCCCCCCEE-EEEeCCCeEEEEEcC
Q 022111           12 DTVHDVAMDFYGKRLATASSDSSIKIIGLSNSASQH---LATLKGHRGPVWQVAWAHPKFGSIL-ASCSYDGQVIIWKEG   87 (302)
Q Consensus        12 ~~v~~~~~s~~~~~l~s~~~d~~v~lw~~~~~~~~~---~~~~~~h~~~v~~v~~~~~~~~~~l-~s~s~D~~i~iwd~~   87 (302)
                      ..+..++|||||++|++++.|++|++||+.......   +....+|.+.+.+..|+++  |++| ++++.++++++||..
T Consensus        62 ~~~~~v~fSpDG~~l~~~s~dg~v~~~d~~t~~~~~~~~i~~~~~~~~~~~s~~~SpD--G~~l~vs~~~~~~v~i~d~~  139 (432)
T d1qksa2          62 YAVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIGSEARSIETSKMEGWE--DKYAIAGAYWPPQYVIMDGE  139 (432)
T ss_dssp             SCEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCEEEEEECCSEEEEEEECCSTTCT--TTEEEEEEEETTEEEEEETT
T ss_pred             CCeeEEEECCCCCEEEEEcCCCCEEEEEeeCCCceEEEEEecCCCCCCeEEecccCCC--CCEEEEEcCCCCeEEEEeCc
Confidence            368999999999999999999999999986544332   3333467777777777654  7764 788999999999987


Q ss_pred             CCCceeEEEEecC-----------CCCCeeEEEecCCCCCcEEEEEecCCcEEEEEecCCCCeeeeeecccCCCCeEEEE
Q 022111           88 NQNDWTQAHTFND-----------HKSSVNSIAWAPHELGLSLACGSSDGNISVFTATADGGWDTTRIDQAHPVGVTSVS  156 (302)
Q Consensus        88 ~~~~~~~~~~~~~-----------h~~~i~~l~~~pd~~~~~l~sg~~d~~v~~~~~~~~~~~~~~~~~~~h~~~v~~~~  156 (302)
                      +..   .+..+..           +......+.++|+. ...+++...++.|.+|+...........+  .+......+.
T Consensus       140 t~~---~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg-~~~~vs~~~~~~i~~~d~~~~~~~~~~~i--~~g~~~~~~~  213 (432)
T d1qksa2         140 TLE---PKKIQSTRGMTYDEQEYHPEPRVAAILASHYR-PEFIVNVKETGKILLVDYTDLNNLKTTEI--SAERFLHDGG  213 (432)
T ss_dssp             TCC---EEEEEECCEECTTTCCEESCCCEEEEEECSSS-SEEEEEETTTTEEEEEETTCSSEEEEEEE--ECCSSEEEEE
T ss_pred             ccc---ceeeeccCCccccceeccCCCceeEEEECCCC-CEEEEEEccCCeEEEEEccCCCcceEEEE--cccCccccce
Confidence            754   2332222           44566778889883 34567778889999998764332222332  3344567888


Q ss_pred             eCCCCCCC-------ceee--------------ccc------------CCC-ceeEEEe-eCCCcEEEEEEecCcccccc
Q 022111          157 WAPAMAPG-------ALVG--------------LGL------------LDP-VQKLASC-GCDNTVKVWKMYNGIWKMDC  201 (302)
Q Consensus       157 ~~~~~~~~-------~~~~--------------~~~------------~~~-~~~l~s~-~~D~~v~iwd~~~~~~~~~~  201 (302)
                      ++|++...       ..+.              .+.            .+. +...++. ..|+.+.+|+.....     
T Consensus       214 ~spdg~~~~va~~~~~~v~v~d~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~lg~~~v~~~~~~~~~-----  288 (432)
T d1qksa2         214 LDGSHRYFITAANARNKLVVIDTKEGKLVAIEDTGGQTPHPGRGANFVHPTFGPVWATSHMGDDSVALIGTDPEG-----  288 (432)
T ss_dssp             ECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSSBCCTTCEEEEETTTEEEEEEEBSSSSEEEEEECCTTT-----
T ss_pred             ECCCCCEEEEeccccceEEEeecccceEEEEeccCccccccCcccceecCCCCceecccccCCceEEeccccccc-----
Confidence            88875310       0000              000            000 1112222 125555555543210     


Q ss_pred             ccccccCCCceeEEEeeCCCCC-------------------------------CccEEEEEecCCeEEEEEeccCCccee
Q 022111          202 FPALQMHSDWVRSVAWAPNLGL-------------------------------PKSTIASASQDGTVVIWTCAKEGEQWE  250 (302)
Q Consensus       202 ~~~~~~h~~~v~~v~~~p~~~~-------------------------------~~~~l~s~s~D~~i~iwd~~~~~~~~~  250 (302)
                         +..|...|....++|++..                               +++.+++++.|+++++|++.+.     
T Consensus       289 ---~~~~~~~v~~~~~~~~g~~~~~~s~p~~~~lw~~~~~~~~~~~~~sv~vpDg~~la~~s~d~~~k~w~~~~~-----  360 (432)
T d1qksa2         289 ---HPDNAWKILDSFPALGGGSLFIKTHPNSQYLYVDATLNPEAEISGSVAVFDIKAMTGDGSDPEFKTLPIAEW-----  360 (432)
T ss_dssp             ---CTTTBTSEEEEEECSCSCCCCEECCTTCSEEEEECTTCSSHHHHTCEEEEEGGGCCCSSSCCCEEEECHHHH-----
T ss_pred             ---ccccccEEEEEEEcCCCCeEEEEecCCccceeecccCCCCCCeeeEEEEEechhhcccccCCceEecccccc-----
Confidence               1112222333333333210                               1355677777777777765421     


Q ss_pred             eeeeccCCCcEEEEEEccCCCEEEEec-----CC-ceEEeeecCCceEEEeeec
Q 022111          251 GRVLKDFKTPVWSVSWSLTGNLLAVAD-----AN-NVTLWKEAVDGEWQQVSVV  298 (302)
Q Consensus       251 ~~~~~~~~~~v~~~~~spdg~~la~~~-----~d-~i~~w~~~~~~~~~~~~~~  298 (302)
                       ..+.++...+..++|||||++|++..     .+ .|.|||...-+.|...+..
T Consensus       361 -~~l~~~~~~v~~~~fS~DG~~v~~S~~~~~~~~g~i~i~D~~T~k~~~~i~~~  413 (432)
T d1qksa2         361 -AGITEGQPRVVQGEFNKDGTEVWFSVWNGKDQESALVVVDDKTLELKHVIKDE  413 (432)
T ss_dssp             -HTCCSSCCEEEEEEECTTSSEEEEEEECCTTSCCEEEEEETTTTEEEEEECCT
T ss_pred             -cccCCCCCcEEEeEECCCCCEEEEEEecCCCCCCcEEEEECCCceEEeEecCC
Confidence             11234556789999999999885442     23 5999998877777766553

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=99.87  E-value=7.9e-21  Score=163.04  Aligned_cols=189  Identities=11%  Similarity=0.003  Sum_probs=146.6

Q ss_pred             EEEcc-CCCEEEEeeCCCcEEEEeecCCCceEEEEecCcccCeEEEEeeCCCCCCEEEEEeCCC--eEEEEEcCCCCcee
Q 022111           17 VAMDF-YGKRLATASSDSSIKIIGLSNSASQHLATLKGHRGPVWQVAWAHPKFGSILASCSYDG--QVIIWKEGNQNDWT   93 (302)
Q Consensus        17 ~~~s~-~~~~l~s~~~d~~v~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~s~D~--~i~iwd~~~~~~~~   93 (302)
                      -.||| ||+++|+++ ++.|++|+...+.   +..+ +|...|.+++|+|+  |++|++++.+.  .+++||.+++    
T Consensus         8 ~~fSP~dG~~~a~~~-~g~v~v~d~~~~~---~~~~-~~~~~v~~~~~spD--g~~l~~~~~~~g~~v~v~d~~~~----   76 (360)
T d1k32a3           8 EDFSPLDGDLIAFVS-RGQAFIQDVSGTY---VLKV-PEPLRIRYVRRGGD--TKVAFIHGTREGDFLGIYDYRTG----   76 (360)
T ss_dssp             EEEEECGGGCEEEEE-TTEEEEECTTSSB---EEEC-SCCSCEEEEEECSS--SEEEEEEEETTEEEEEEEETTTC----
T ss_pred             ccccCCCCCEEEEEE-CCeEEEEECCCCc---EEEc-cCCCCEEEEEECCC--CCEEEEEEcCCCCEEEEEECCCC----
Confidence            45999 999999876 5799999986533   2334 69999999999874  88888777654  7999998765    


Q ss_pred             EEEEecCCCCCeeEEEecCCCCCcEEEEEecCCcEEEEEecCCCCeeeeeecccCCCCeEEEEeCCCCCCCceeecccCC
Q 022111           94 QAHTFNDHKSSVNSIAWAPHELGLSLACGSSDGNISVFTATADGGWDTTRIDQAHPVGVTSVSWAPAMAPGALVGLGLLD  173 (302)
Q Consensus        94 ~~~~~~~h~~~i~~l~~~pd~~~~~l~sg~~d~~v~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~  173 (302)
                      ....+..|...|.+++|+||  +.+|++++.++.+++|+.......   .....|...+.+++|+|++            
T Consensus        77 ~~~~~~~~~~~v~~~~~spd--g~~l~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~spdg------------  139 (360)
T d1k32a3          77 KAEKFEENLGNVFAMGVDRN--GKFAVVANDRFEIMTVDLETGKPT---VIERSREAMITDFTISDNS------------  139 (360)
T ss_dssp             CEEECCCCCCSEEEEEECTT--SSEEEEEETTSEEEEEETTTCCEE---EEEECSSSCCCCEEECTTS------------
T ss_pred             cEEEeeCCCceEEeeeeccc--ccccceecccccccccccccccee---eeeecccccccchhhccce------------
Confidence            34567789999999999998  779999999999999998754322   2223567778899999974            


Q ss_pred             CceeEE----------EeeCCCcEEEEEEecCccccccccccccCCCceeEEEeeCCCCCCccEEEEEecCCeEEEEEec
Q 022111          174 PVQKLA----------SCGCDNTVKVWKMYNGIWKMDCFPALQMHSDWVRSVAWAPNLGLPKSTIASASQDGTVVIWTCA  243 (302)
Q Consensus       174 ~~~~l~----------s~~~D~~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~l~s~s~D~~i~iwd~~  243 (302)
                        ++|+          ++..++.+++||+.++.     ...+..|...+.+++|+|++    +.|++++.|+.+++||..
T Consensus       140 --~~la~~~~~~~~~~~~~~~~~~~v~d~~~~~-----~~~~~~~~~~~~~~~~spdg----~~l~~~s~~~~~~~~d~~  208 (360)
T d1k32a3         140 --RFIAYGFPLKHGETDGYVMQAIHVYDMEGRK-----IFAATTENSHDYAPAFDADS----KNLYYLSYRSLDPSPDRV  208 (360)
T ss_dssp             --CEEEEEEEECSSTTCSCCEEEEEEEETTTTE-----EEECSCSSSBEEEEEECTTS----CEEEEEESCCCCCEECSS
T ss_pred             --eeeeeeccccccceeeccccceeeeccccCc-----eeeecccccccccccccCCC----CEEEEEeCCCceEccccc
Confidence              4444          34556679999987652     22344577788999999995    789999999999999865


Q ss_pred             c
Q 022111          244 K  244 (302)
Q Consensus       244 ~  244 (302)
                      .
T Consensus       209 ~  209 (360)
T d1k32a3         209 V  209 (360)
T ss_dssp             S
T ss_pred             c
Confidence            3

>d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Putative isomerase YbhE
family: Putative isomerase YbhE
domain: Putative isomerase YbhE
species: Escherichia coli [TaxId: 562]

Probab=99.84  E-value=2.7e-18  Score=145.68  Aligned_cols=266  Identities=13%  Similarity=0.170  Sum_probs=153.3

Q ss_pred             EEEEeeCCCcEEEEeecCCCceEEEEecCcccCeEEEEeeCCCCCCEEE-EEeCCCeEEEEEcCCCCceeEEEEecCCCC
Q 022111           25 RLATASSDSSIKIIGLSNSASQHLATLKGHRGPVWQVAWAHPKFGSILA-SCSYDGQVIIWKEGNQNDWTQAHTFNDHKS  103 (302)
Q Consensus        25 ~l~s~~~d~~v~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~-s~s~D~~i~iwd~~~~~~~~~~~~~~~h~~  103 (302)
                      .+++++.|++|++|++.......+.....|.+.+..|+|+|+  |++|+ ++..|+.|++|++..............+..
T Consensus         6 v~v~~~~~~~I~v~~~~~~~~l~~~~~~~~~~~v~~la~spD--G~~L~v~~~~d~~i~~~~i~~~~~~~~~~~~~~~~~   83 (333)
T d1ri6a_           6 VYIASPESQQIHVWNLNHEGALTLTQVVDVPGQVQPMVVSPD--KRYLYVGVRPEFRVLAYRIAPDDGALTFAAESALPG   83 (333)
T ss_dssp             EEEEEGGGTEEEEEEECTTSCEEEEEEEECSSCCCCEEECTT--SSEEEEEETTTTEEEEEEECTTTCCEEEEEEEECSS
T ss_pred             EEEECCCCCcEEEEEEcCCCCeEEEEEEcCCCCEeEEEEeCC--CCEEEEEECCCCeEEEEEEeCCCCcEEEeeecccCC
Confidence            356778999999999965432222333467888999999875  88874 555689999999865432211212222445


Q ss_pred             CeeEEEecCCCCCcEEEEEec-CCcEEEEEecCCCCeeeeeecccCCCCeEEEEeCCCCCCCc--------ee-------
Q 022111          104 SVNSIAWAPHELGLSLACGSS-DGNISVFTATADGGWDTTRIDQAHPVGVTSVSWAPAMAPGA--------LV-------  167 (302)
Q Consensus       104 ~i~~l~~~pd~~~~~l~sg~~-d~~v~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~--------~~-------  167 (302)
                      .+..++|+||  |++|++++. ++.+.+|+............. .+...+.++.++|++....        +.       
T Consensus        84 ~p~~l~~spD--g~~l~v~~~~~~~v~~~~~~~~~~~~~~~~~-~~~~~~~~v~~s~d~~~~~~~~~~~~~i~~~~~~~~  160 (333)
T d1ri6a_          84 SLTHISTDHQ--GQFVFVGSYNAGNVSVTRLEDGLPVGVVDVV-EGLDGCHSANISPDNRTLWVPALKQDRICLFTVSDD  160 (333)
T ss_dssp             CCSEEEECTT--SSEEEEEETTTTEEEEEEEETTEEEEEEEEE-CCCTTBCCCEECTTSSEEEEEEGGGTEEEEEEECTT
T ss_pred             CceEEEEcCC--CCEEeecccCCCceeeeccccccceeccccc-CCCccceEEEeeecceeeeccccccceeeEEEeccC
Confidence            6788999998  667777764 678888887643322222221 3444455666666542100        00       


Q ss_pred             --------------------ecccCCCcee-EEEeeCCCcEEEEEEecCccccccc------cccccCCCceeEEEeeCC
Q 022111          168 --------------------GLGLLDPVQK-LASCGCDNTVKVWKMYNGIWKMDCF------PALQMHSDWVRSVAWAPN  220 (302)
Q Consensus       168 --------------------~~~~~~~~~~-l~s~~~D~~v~iwd~~~~~~~~~~~------~~~~~h~~~v~~v~~~p~  220 (302)
                                          .+.+.+++.. +.+....+...+++...........      ............++++|+
T Consensus       161 ~~~~~~~~~~~~~~~g~~p~~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d  240 (333)
T d1ri6a_         161 GHLVAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHITPD  240 (333)
T ss_dssp             SCEEEEEEEEEECSTTCCEEEEEECTTSSEEEEEETTTTEEEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEEEEECTT
T ss_pred             CcceeeeceeeeeecCCCccEEEEeccceeEEeeccccCceEEEeecccccceeeeeeeeeeecCCCccccceeEEEecc
Confidence                                0000111112 2222333344455433221111100      011123345677889998


Q ss_pred             CCCCccEEEEEecCCeEEEEEeccCCcceeeeeeccCCCcEEEEEEccCCCEEEEecCC--ceEEeee-cCCceEEEeee
Q 022111          221 LGLPKSTIASASQDGTVVIWTCAKEGEQWEGRVLKDFKTPVWSVSWSLTGNLLAVADAN--NVTLWKE-AVDGEWQQVSV  297 (302)
Q Consensus       221 ~~~~~~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~la~~~~d--~i~~w~~-~~~~~~~~~~~  297 (302)
                      +   ...++++..++.+++|++..................+.+++|||||++|++++++  .|++|+. ...|..++..+
T Consensus       241 ~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~a~spDGk~l~va~~~~~~v~v~~id~~tG~l~~~~~  317 (333)
T d1ri6a_         241 G---RHLYACDRTASLITVFSVSEDGSVLSKEGFQPTETQPRGFNVDHSGKYLIAAGQKSHHISVYEIVGEQGLLHEKGR  317 (333)
T ss_dssp             S---SEEEEEETTTTEEEEEEECTTSCCEEEEEEEECSSSCCCEEECTTSSEEEEECTTTCEEEEEEEETTTTEEEEEEE
T ss_pred             c---CceeeecccCCeEEEEEEcCCCCEEEEEEEeCCCCCeeEEEEeCCCCEEEEEECCCCeEEEEEEECCCCcEEEEEe
Confidence            6   2456677788899999987543322111112233457789999999998888654  6999976 34677766654


Q ss_pred             c
Q 022111          298 V  298 (302)
Q Consensus       298 ~  298 (302)
                      +
T Consensus       318 ~  318 (333)
T d1ri6a_         318 Y  318 (333)
T ss_dssp             E
T ss_pred             c
Confidence            4

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

Probab=99.82  E-value=6.2e-17  Score=134.99  Aligned_cols=242  Identities=11%  Similarity=0.077  Sum_probs=158.0

Q ss_pred             cceeEEEEccCCCEE-EEeeCCCcEEEEeecCCCceEEEEecCcccCeEEEEeeCCCCCCEEEEEeCCCeEEEEEcCCCC
Q 022111           12 DTVHDVAMDFYGKRL-ATASSDSSIKIIGLSNSASQHLATLKGHRGPVWQVAWAHPKFGSILASCSYDGQVIIWKEGNQN   90 (302)
Q Consensus        12 ~~v~~~~~s~~~~~l-~s~~~d~~v~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~s~D~~i~iwd~~~~~   90 (302)
                      ..+..++|+|||++| ++++.+++|++||+.+  .+.+..+..|. .+..+.|+++ ...+++++..++.+.+|+..+. 
T Consensus        32 ~~p~~va~spdG~~l~v~~~~~~~i~v~d~~t--~~~~~~~~~~~-~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~-  106 (301)
T d1l0qa2          32 SNPMGAVISPDGTKVYVANAHSNDVSIIDTAT--NNVIATVPAGS-SPQGVAVSPD-GKQVYVTNMASSTLSVIDTTSN-  106 (301)
T ss_dssp             SSEEEEEECTTSSEEEEEEGGGTEEEEEETTT--TEEEEEEECSS-SEEEEEECTT-SSEEEEEETTTTEEEEEETTTT-
T ss_pred             CCceEEEEeCCCCEEEEEECCCCEEEEEECCC--Cceeeeeeccc-cccccccccc-cccccccccccceeeecccccc-
Confidence            456789999999987 4666889999999865  45667777665 4678899764 2335667778889999998765 


Q ss_pred             ceeEEEEecCCCCCeeEEEecCCCCCcEEEEEecCCcEEEEEecCCCCeeeeeecccCCCCeEEEEeCCCCCCCceeecc
Q 022111           91 DWTQAHTFNDHKSSVNSIAWAPHELGLSLACGSSDGNISVFTATADGGWDTTRIDQAHPVGVTSVSWAPAMAPGALVGLG  170 (302)
Q Consensus        91 ~~~~~~~~~~h~~~i~~l~~~pd~~~~~l~sg~~d~~v~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~  170 (302)
                        .....+. +...+.++.|+|+. ...++++..++.+.+|+......  ...+  .+......+.++|+.         
T Consensus       107 --~~~~~~~-~~~~~~~~~~~~dg-~~~~~~~~~~~~~~~~~~~~~~~--~~~~--~~~~~~~~~~~~~~~---------  169 (301)
T d1l0qa2         107 --TVAGTVK-TGKSPLGLALSPDG-KKLYVTNNGDKTVSVINTVTKAV--INTV--SVGRSPKGIAVTPDG---------  169 (301)
T ss_dssp             --EEEEEEE-CSSSEEEEEECTTS-SEEEEEETTTTEEEEEETTTTEE--EEEE--ECCSSEEEEEECTTS---------
T ss_pred             --eeeeecc-ccccceEEEeecCC-Ceeeeeeccccceeeeeccccce--eeec--ccCCCceEEEeeccc---------
Confidence              2444444 44567889999983 23456677788899998764322  1222  233456778888764         


Q ss_pred             cCCCceeEEEeeC-CCcEEEEEEecCccccccccccccCCCceeEEEeeCCCCCCccEEEEE---ecCCeEEEEEeccCC
Q 022111          171 LLDPVQKLASCGC-DNTVKVWKMYNGIWKMDCFPALQMHSDWVRSVAWAPNLGLPKSTIASA---SQDGTVVIWTCAKEG  246 (302)
Q Consensus       171 ~~~~~~~l~s~~~-D~~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~l~s~---s~D~~i~iwd~~~~~  246 (302)
                           ..+++++. ++.+.+|+.....    ....+ .+...+..++|+|++    ..++.+   ..++.|++||..+..
T Consensus       170 -----~~~~~~~~~~~~~~~~~~~~~~----~~~~~-~~~~~~~~~~~~~~g----~~~~v~~~~~~~~~v~v~D~~t~~  235 (301)
T d1l0qa2         170 -----TKVYVANFDSMSISVIDTVTNS----VIDTV-KVEAAPSGIAVNPEG----TKAYVTNVDKYFNTVSMIDTGTNK  235 (301)
T ss_dssp             -----SEEEEEETTTTEEEEEETTTTE----EEEEE-ECSSEEEEEEECTTS----SEEEEEEECSSCCEEEEEETTTTE
T ss_pred             -----cceeeeccccccccccccccee----eeecc-cccCCcceeeccccc----cccccccccceeeeeeeeecCCCe
Confidence                 44555544 4556666654431    11122 234457789999986    434333   345789999987542


Q ss_pred             cceeeeeeccCCCcEEEEEEccCCCEEE-EecCC-ceEEeeecCCceEE
Q 022111          247 EQWEGRVLKDFKTPVWSVSWSLTGNLLA-VADAN-NVTLWKEAVDGEWQ  293 (302)
Q Consensus       247 ~~~~~~~~~~~~~~v~~~~~spdg~~la-~~~~d-~i~~w~~~~~~~~~  293 (302)
                      .  ...+  .....+.+++|||||++|. +++.+ .|++||.+......
T Consensus       236 ~--~~~~--~~~~~~~~va~spdg~~l~va~~~~~~i~v~D~~t~~~~~  280 (301)
T d1l0qa2         236 I--TARI--PVGPDPAGIAVTPDGKKVYVALSFCNTVSVIDTATNTITA  280 (301)
T ss_dssp             E--EEEE--ECCSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEE
T ss_pred             E--EEEE--cCCCCEEEEEEeCCCCEEEEEECCCCeEEEEECCCCeEEE
Confidence            1  1111  2345689999999999874 44445 79999986543333

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.81  E-value=6.9e-18  Score=142.91  Aligned_cols=232  Identities=15%  Similarity=0.136  Sum_probs=147.1

Q ss_pred             CEEEEeeCCCcEEEEeecCCCceEEEEecC--cccCeEEEEeeCCCCCCEE-EEEeCCCeEEEEEcCCCCceeEEEEecC
Q 022111           24 KRLATASSDSSIKIIGLSNSASQHLATLKG--HRGPVWQVAWAHPKFGSIL-ASCSYDGQVIIWKEGNQNDWTQAHTFND  100 (302)
Q Consensus        24 ~~l~s~~~d~~v~lw~~~~~~~~~~~~~~~--h~~~v~~v~~~~~~~~~~l-~s~s~D~~i~iwd~~~~~~~~~~~~~~~  100 (302)
                      ++|++++.|++|++||+.+  .+.+.++..  +...+.+++|+|+  |++| ++++.++.|.+||+.++.   .+..+..
T Consensus         2 ~~~vt~~~d~~v~v~D~~s--~~~~~~i~~~~~~~~~~~i~~spD--g~~l~v~~~~~~~v~v~D~~t~~---~~~~~~~   74 (337)
T d1pbyb_           2 DYILAPARPDKLVVIDTEK--MAVDKVITIADAGPTPMVPMVAPG--GRIAYATVNKSESLVKIDLVTGE---TLGRIDL   74 (337)
T ss_dssp             EEEEEEETTTEEEEEETTT--TEEEEEEECTTCTTCCCCEEECTT--SSEEEEEETTTTEEEEEETTTCC---EEEEEEC
T ss_pred             eEEEEEcCCCEEEEEECCC--CeEEEEEECCCCCCCccEEEECCC--CCEEEEEECCCCeEEEEECCCCc---EEEEEec
Confidence            5899999999999999975  455666643  4455788999864  7776 577789999999998764   3333333


Q ss_pred             C-----CCCeeEEEecCCCCCcEEEEEe------------cCCcEEEEEecCCCCeeeeeecccCCCCeEEEEeCCCCCC
Q 022111          101 H-----KSSVNSIAWAPHELGLSLACGS------------SDGNISVFTATADGGWDTTRIDQAHPVGVTSVSWAPAMAP  163 (302)
Q Consensus       101 h-----~~~i~~l~~~pd~~~~~l~sg~------------~d~~v~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~  163 (302)
                      +     ...+..++|+|+  +..++.+.            .+..+.+||.....  ....+  .+...+..+.|+|++  
T Consensus        75 ~~~~~~~~~~~~v~~s~d--g~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~--~~~~~--~~~~~~~~~~~s~dg--  146 (337)
T d1pbyb_          75 STPEERVKSLFGAALSPD--GKTLAIYESPVRLELTHFEVQPTRVALYDAETLS--RRKAF--EAPRQITMLAWARDG--  146 (337)
T ss_dssp             CBTTEEEECTTCEEECTT--SSEEEEEEEEEEECSSCEEECCCEEEEEETTTTE--EEEEE--ECCSSCCCEEECTTS--
T ss_pred             CCCcccccceeeEEEcCC--CcEEEEeecCCcceeeeccccccceeeccccCCe--EEEec--cccCCceEEEEcCCC--
Confidence            3     234568899998  55676665            35667777765321  11122  233445667777754  


Q ss_pred             CceeecccCCCceeEEEeeCCCcEEEEEEe--------------------------------------------------
Q 022111          164 GALVGLGLLDPVQKLASCGCDNTVKVWKMY--------------------------------------------------  193 (302)
Q Consensus       164 ~~~~~~~~~~~~~~l~s~~~D~~v~iwd~~--------------------------------------------------  193 (302)
                                  +++++++.+  +.+||..                                                  
T Consensus       147 ------------~~l~~~~~~--~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  212 (337)
T d1pbyb_         147 ------------SKLYGLGRD--LHVMDPEAGTLVEDKPIQSWEAETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPA  212 (337)
T ss_dssp             ------------SCEEEESSS--EEEEETTTTEEEEEECSTTTTTTTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTT
T ss_pred             ------------CEEEEEcCC--cceeeeecCcEEEEeecCCccccceecCCcceeeccccccceeeeeeeeeeecccee
Confidence                        334443322  3344432                                                  


Q ss_pred             ---------------cCccccccccccccCCCceeEEEeeCCCCCCccEEEEEecCCeEEEEEeccCCcceeeeeeccCC
Q 022111          194 ---------------NGIWKMDCFPALQMHSDWVRSVAWAPNLGLPKSTIASASQDGTVVIWTCAKEGEQWEGRVLKDFK  258 (302)
Q Consensus       194 ---------------~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~~~  258 (302)
                                     ++..   ....+..|...+.+++++|++    ..++++  ++.|++||+.+....  ..  ..+.
T Consensus       213 ~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~----~~~~~~--~~~i~v~d~~~~~~~--~~--~~~~  279 (337)
T d1pbyb_         213 DPTAYRTGLLTMDLETGEM---AMREVRIMDVFYFSTAVNPAK----TRAFGA--YNVLESFDLEKNASI--KR--VPLP  279 (337)
T ss_dssp             SGGGEEEEEEEEETTTCCE---EEEEEEECSSCEEEEEECTTS----SEEEEE--ESEEEEEETTTTEEE--EE--EECS
T ss_pred             eecccCccEEEEEcCCCcE---EEEEecCCCcceEEEEecccc----eEEEEc--cccEEEEECCCCcEE--EE--EcCC
Confidence                           2110   001123345556677777774    445444  689999999864321  11  2345


Q ss_pred             CcEEEEEEccCCCEEEEecCC-ceEEeeecCCceEEEeee
Q 022111          259 TPVWSVSWSLTGNLLAVADAN-NVTLWKEAVDGEWQQVSV  297 (302)
Q Consensus       259 ~~v~~~~~spdg~~la~~~~d-~i~~w~~~~~~~~~~~~~  297 (302)
                      ..+.+++|||||++|++++.+ .|++||......-...++
T Consensus       280 ~~~~~~~~s~dG~~l~v~~~~~~i~v~D~~t~~~v~~i~~  319 (337)
T d1pbyb_         280 HSYYSVNVSTDGSTVWLGGALGDLAAYDAETLEKKGQVDL  319 (337)
T ss_dssp             SCCCEEEECTTSCEEEEESBSSEEEEEETTTCCEEEEEEC
T ss_pred             CCEEEEEECCCCCEEEEEeCCCcEEEEECCCCcEEEEEEC
Confidence            568899999999999999887 799999876555555444

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

Probab=99.79  E-value=2e-17  Score=140.49  Aligned_cols=259  Identities=9%  Similarity=0.013  Sum_probs=152.5

Q ss_pred             EEEccCCCEEEEeeCCCcEEEEeecCCCceEEEEec-CcccCeEEEEeeCCCCCCEE-EEEeCCCeEEEEEcCCCCceeE
Q 022111           17 VAMDFYGKRLATASSDSSIKIIGLSNSASQHLATLK-GHRGPVWQVAWAHPKFGSIL-ASCSYDGQVIIWKEGNQNDWTQ   94 (302)
Q Consensus        17 ~~~s~~~~~l~s~~~d~~v~lw~~~~~~~~~~~~~~-~h~~~v~~v~~~~~~~~~~l-~s~s~D~~i~iwd~~~~~~~~~   94 (302)
                      ++|++++++|++++.|++|.+||+.+  .+.+.++. .|...+.+++|+|+  |+++ ++++.++.|.+||+.+..   .
T Consensus         2 ~a~~~~~~~l~~~~~~~~v~v~D~~t--~~~~~t~~~~~~~~p~~l~~spD--G~~l~v~~~~~~~v~~~d~~t~~---~   74 (346)
T d1jmxb_           2 PALKAGHEYMIVTNYPNNLHVVDVAS--DTVYKSCVMPDKFGPGTAMMAPD--NRTAYVLNNHYGDIYGIDLDTCK---N   74 (346)
T ss_dssp             CCCCTTCEEEEEEETTTEEEEEETTT--TEEEEEEECSSCCSSCEEEECTT--SSEEEEEETTTTEEEEEETTTTE---E
T ss_pred             ccCCCCCcEEEEEcCCCEEEEEECCC--CCEEEEEEcCCCCCcceEEECCC--CCEEEEEECCCCcEEEEeCccCe---e
Confidence            46899999999999999999999975  45666665 45566789999864  7765 667789999999997763   3


Q ss_pred             EEEecCC------CCCeeEEEecCCCCCcEEEEEe------------cCCcEEEEEecCCCCeeeeeecccCCCCeEEEE
Q 022111           95 AHTFNDH------KSSVNSIAWAPHELGLSLACGS------------SDGNISVFTATADGGWDTTRIDQAHPVGVTSVS  156 (302)
Q Consensus        95 ~~~~~~h------~~~i~~l~~~pd~~~~~l~sg~------------~d~~v~~~~~~~~~~~~~~~~~~~h~~~v~~~~  156 (302)
                      ...+...      ...+..++|+||  |.+++.++            .+..+.+|+............. ..+..+..+.
T Consensus        75 ~~~~~~~~~~~~~~~~~~~v~~s~D--G~~l~v~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~-~~~~~~~~~~  151 (346)
T d1jmxb_          75 TFHANLSSVPGEVGRSMYSFAISPD--GKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTF-PMPRQVYLMR  151 (346)
T ss_dssp             EEEEESCCSTTEEEECSSCEEECTT--SSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEE-ECCSSCCCEE
T ss_pred             eeeecccccccccCCceEEEEEecC--CCEEEEEecCCcceeeeeccCcceEEEEecccceeeeEEEee-eccCceEEEE
Confidence            3333221      124568899998  55666554            4667778876532211100000 0011111111


Q ss_pred             eCCCCC--------------CCcee----------ecccCCCce--------------------------eEEEeeCCCc
Q 022111          157 WAPAMA--------------PGALV----------GLGLLDPVQ--------------------------KLASCGCDNT  186 (302)
Q Consensus       157 ~~~~~~--------------~~~~~----------~~~~~~~~~--------------------------~l~s~~~D~~  186 (302)
                      ++++..              .+...          .....+++.                          .++++..+..
T Consensus       152 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  231 (346)
T d1jmxb_         152 AADDGSLYVAGPDIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYG  231 (346)
T ss_dssp             ECTTSCEEEESSSEEEECTTTCCEEEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC-------CCCEEEEE
T ss_pred             ecCCCEEEEeCCcceEEEccCCCEEEEEecCCCccceEEeccccEEEEEecCCCceEeeeeeeeeccCceeEeeccCCce
Confidence            111110              00000          000011111                          1222333444


Q ss_pred             EEEEEEecCccccccccccccCCCceeEEEeeCCCCCCccEEEEEecCCeEEEEEeccCCcceeeeeeccCCCcEEEEEE
Q 022111          187 VKVWKMYNGIWKMDCFPALQMHSDWVRSVAWAPNLGLPKSTIASASQDGTVVIWTCAKEGEQWEGRVLKDFKTPVWSVSW  266 (302)
Q Consensus       187 v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~  266 (302)
                      +.+||+.++..   ....+..|...+.++.++|++    ..++.... +.|++||....+.  ...  ......+++++|
T Consensus       232 ~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~-~~v~v~d~~~~~~--~~~--~~~~~~~~~va~  299 (346)
T d1jmxb_         232 YLSVDLKTGKT---HTQEFADLTELYFTGLRSPKD----PNQIYGVL-NRLAKYDLKQRKL--IKA--ANLDHTYYCVAF  299 (346)
T ss_dssp             EEEEETTTCCE---EEEEEEECSSCEEEEEECSSC----TTEEEEEE-SEEEEEETTTTEE--EEE--EECSSCCCEEEE
T ss_pred             EEEEECCCCce---EEEEeecccceeEEEEEeCCC----CEEEEecC-CeEEEEECCCCcE--EEE--EcCCCCEEEEEE
Confidence            55555544321   112344677788899999885    44665554 5799999875421  111  223456889999


Q ss_pred             ccCCCEEEEecCC-ceEEeeecCCceEEEeee
Q 022111          267 SLTGNLLAVADAN-NVTLWKEAVDGEWQQVSV  297 (302)
Q Consensus       267 spdg~~la~~~~d-~i~~w~~~~~~~~~~~~~  297 (302)
                      ||||++|++++.+ .|++||....+.......
T Consensus       300 s~DG~~l~v~~~d~~v~v~D~~t~~~i~~i~~  331 (346)
T d1jmxb_         300 DKKGDKLYLGGTFNDLAVFNPDTLEKVKNIKL  331 (346)
T ss_dssp             CSSSSCEEEESBSSEEEEEETTTTEEEEEEEC
T ss_pred             cCCCCEEEEEeCCCcEEEEECccCCEEEEEEC
Confidence            9999999999887 799999875544444443

>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=99.79  E-value=4.8e-18  Score=150.41  Aligned_cols=252  Identities=8%  Similarity=-0.002  Sum_probs=148.6

Q ss_pred             EEccCC--CEEEEeeCCCcEEEEeecCCCceEEEEecCcccCeEEEEeeCCCCCCEEEEEeCCCeEEEEEcCCCCcee--
Q 022111           18 AMDFYG--KRLATASSDSSIKIIGLSNSASQHLATLKGHRGPVWQVAWAHPKFGSILASCSYDGQVIIWKEGNQNDWT--   93 (302)
Q Consensus        18 ~~s~~~--~~l~s~~~d~~v~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~s~D~~i~iwd~~~~~~~~--   93 (302)
                      .++.|.  -++++.+.|++|+|||..+  .+.+..+..|. .+..++|+|+  |++|++++.|+++++||+.+.....  
T Consensus        25 ~~~~d~~~~~~V~~~~dg~v~vwD~~t--~~~~~~l~~g~-~~~~vafSPD--Gk~l~~~~~d~~v~vwd~~t~~~~~~~   99 (426)
T d1hzua2          25 LNDLDLPNLFSVTLRDAGQIALVDGDS--KKIVKVIDTGY-AVHISRMSAS--GRYLLVIGRDARIDMIDLWAKEPTKVA   99 (426)
T ss_dssp             CSCCCGGGEEEEEETTTTEEEEEETTT--CSEEEEEECCS-SEEEEEECTT--SCEEEEEETTSEEEEEETTSSSCEEEE
T ss_pred             cccCCCCeEEEEEEcCCCEEEEEECCC--CcEEEEEeCCC-CeeEEEECCC--CCEEEEEeCCCCEEEEEccCCceeEEE
Confidence            344553  3567888999999999865  45677887765 5899999874  8999999999999999997764321  


Q ss_pred             EEEEecCCCCCeeEEEecCCCCCcEE-EEEecCCcEEEEEecCCCCeeeeeecccCCCCeEEEEeCCCCCCCceeecccC
Q 022111           94 QAHTFNDHKSSVNSIAWAPHELGLSL-ACGSSDGNISVFTATADGGWDTTRIDQAHPVGVTSVSWAPAMAPGALVGLGLL  172 (302)
Q Consensus        94 ~~~~~~~h~~~i~~l~~~pd~~~~~l-~sg~~d~~v~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~  172 (302)
                      .+....+|.+.+.+++|+||  |+++ +++..++.+++||..........   ..|...+....+.+...   ...+...
T Consensus       100 ~i~~~~~~~~~~~s~~~spD--G~~l~v~~~~~~~v~i~d~~~~~~~~~~---~~~~~~~~~~~~~~~~~---~~~i~~s  171 (426)
T d1hzua2         100 EIKIGIEARSVESSKFKGYE--DRYTIAGAYWPPQFAIMDGETLEPKQIV---STRGMTVDTQTYHPEPR---VAAIIAS  171 (426)
T ss_dssp             EEECCSEEEEEEECCSTTCT--TTEEEEEEEESSEEEEEETTTCCEEEEE---ECCEECSSSCCEESCCC---EEEEEEC
T ss_pred             EEeCCCCCcceEEeeeecCC--CCEEEEeecCCCeEEEEcCCccceeEEe---eccCCCccceeecCCCc---eeEEEEC
Confidence            12223356666777888898  5554 56668999999998754322211   13333232233333211   0000111


Q ss_pred             CCce-eEEEeeCCCcEEEEEEecCccccccccccccCCCceeEEEeeCCCCCCccEEEEEecCCeEEEEEeccCCcc---
Q 022111          173 DPVQ-KLASCGCDNTVKVWKMYNGIWKMDCFPALQMHSDWVRSVAWAPNLGLPKSTIASASQDGTVVIWTCAKEGEQ---  248 (302)
Q Consensus       173 ~~~~-~l~s~~~D~~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~l~s~s~D~~i~iwd~~~~~~~---  248 (302)
                      +++. .+.+....+.+.+++..+..   .......++...+.++.|+|++.   ..+++...+..+.+++.......   
T Consensus       172 ~d~~~~~~~~~~~~~i~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~g~---~~~~a~~~~~~~~~~~~~~~~~~~~~  245 (426)
T d1hzua2         172 HEHPEFIVNVKETGKVLLVNYKDID---NLTVTSIGAAPFLADGGWDSSHR---YFMTAANNSNKVAVIDSKDRRLSALV  245 (426)
T ss_dssp             SSSSEEEEEETTTTEEEEEECSSSS---SCEEEEEECCSSEEEEEECTTSC---EEEEEETTCSEEEEEETTTTEEEEEE
T ss_pred             CCCCEEEEecCCCCeEEEEEecccc---ceeeEEeccCCccEeeeECCCCc---EEEeeeecccceeeeecccccEEEEe
Confidence            1122 23333334444444443321   01112345677788899999862   33444444555666665431100   


Q ss_pred             -----------------------------------------------e-eeeeeccCCCcEEEEEEccCCCEEEEe----
Q 022111          249 -----------------------------------------------W-EGRVLKDFKTPVWSVSWSLTGNLLAVA----  276 (302)
Q Consensus       249 -----------------------------------------------~-~~~~~~~~~~~v~~~~~spdg~~la~~----  276 (302)
                                                                     + ....+.++...+++++|||||++|++.    
T Consensus       246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~~~~~~~~~~~~~~~~~~~~l~g~~~~v~~v~~sPdg~~l~v~~~~~  325 (426)
T d1hzua2         246 DVGKTPHPGRGANFVHPKYGPVWSTSHLGDGSISLIGTDPKNHPQYAWKKVAELQGQGGGSLFIKTHPKSSHLYVDTTFN  325 (426)
T ss_dssp             ECSSCCCCSCCEEEEETTTEEEEEEECTTTCEEEEEECCTTTCTTTBTSEEEEEECSSSCCCCEECCTTCSEEEECCTTC
T ss_pred             ccCCcccccceeeeecCCCCceEEeccCCCceEEEeeccccccccccceEeEEEecCCCceeEEEcCCCCceEEEeecCC
Confidence                                                           0 001123445668899999999999963    


Q ss_pred             ---cCC-ceEEeeecC
Q 022111          277 ---DAN-NVTLWKEAV  288 (302)
Q Consensus       277 ---~~d-~i~~w~~~~  288 (302)
                         +.+ +|++|+.+.
T Consensus       326 ~s~~~~~tv~vwd~~t  341 (426)
T d1hzua2         326 PDARISQSVAVFDLKN  341 (426)
T ss_dssp             SSHHHHTCEEEEETTC
T ss_pred             CCcccCCEEEEEECCC
Confidence               223 799999754

>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.75  E-value=1.3e-16  Score=141.54  Aligned_cols=198  Identities=9%  Similarity=-0.049  Sum_probs=131.6

Q ss_pred             ccCCCEEEEeeCCCcEEEEeecCCCceEEEEecCcccCeEEEEeeCCCCCCEEEEEeCCCeEEEEEcCCCCce--eEEEE
Q 022111           20 DFYGKRLATASSDSSIKIIGLSNSASQHLATLKGHRGPVWQVAWAHPKFGSILASCSYDGQVIIWKEGNQNDW--TQAHT   97 (302)
Q Consensus        20 s~~~~~l~s~~~d~~v~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~s~D~~i~iwd~~~~~~~--~~~~~   97 (302)
                      ++++-++++.+.|++|.|||..+  .+.+..+..|. .+..++|+|+  |+++++++.|+++++||+.+....  ..+..
T Consensus        29 ~~~~~~~v~~~d~g~v~v~D~~t--~~v~~~~~~g~-~~~~v~fSpD--G~~l~~~s~dg~v~~~d~~t~~~~~~~~i~~  103 (432)
T d1qksa2          29 DLENLFSVTLRDAGQIALIDGST--YEIKTVLDTGY-AVHISRLSAS--GRYLFVIGRDGKVNMIDLWMKEPTTVAEIKI  103 (432)
T ss_dssp             CGGGEEEEEETTTTEEEEEETTT--CCEEEEEECSS-CEEEEEECTT--SCEEEEEETTSEEEEEETTSSSCCEEEEEEC
T ss_pred             CCCcEEEEEEcCCCEEEEEECCC--CcEEEEEeCCC-CeeEEEECCC--CCEEEEEcCCCCEEEEEeeCCCceEEEEEec
Confidence            33344568999999999999865  45677777664 5899999975  899999999999999998765431  12233


Q ss_pred             ecCCCCCeeEEEecCCCCCcE-EEEEecCCcEEEEEecCCCCeeeeeec--------ccCCCCeEEEEeCCCCCCCceee
Q 022111           98 FNDHKSSVNSIAWAPHELGLS-LACGSSDGNISVFTATADGGWDTTRID--------QAHPVGVTSVSWAPAMAPGALVG  168 (302)
Q Consensus        98 ~~~h~~~i~~l~~~pd~~~~~-l~sg~~d~~v~~~~~~~~~~~~~~~~~--------~~h~~~v~~~~~~~~~~~~~~~~  168 (302)
                      ..+|.+.+.+.+|+||  |++ ++++..++.|++||..+..........        ..+......+.++|++       
T Consensus       104 ~~~~~~~~~s~~~SpD--G~~l~vs~~~~~~v~i~d~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg-------  174 (432)
T d1qksa2         104 GSEARSIETSKMEGWE--DKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYR-------  174 (432)
T ss_dssp             CSEEEEEEECCSTTCT--TTEEEEEEEETTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSS-------
T ss_pred             CCCCCCeEEecccCCC--CCEEEEEcCCCCeEEEEeCccccceeeeccCCccccceeccCCCceeEEEECCCC-------
Confidence            3445566666778888  655 578899999999998754322211100        0112223344555432       


Q ss_pred             cccCCCceeEEEeeCCCcEEEEEEecCccccccccccccCCCceeEEEeeCCCCCCccEEEEE-ecCCeEEEEEecc
Q 022111          169 LGLLDPVQKLASCGCDNTVKVWKMYNGIWKMDCFPALQMHSDWVRSVAWAPNLGLPKSTIASA-SQDGTVVIWTCAK  244 (302)
Q Consensus       169 ~~~~~~~~~l~s~~~D~~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~l~s~-s~D~~i~iwd~~~  244 (302)
                            ..++++...++.|.+||..+.... . +.. ..+.....+++|+|++    ++++++ ..+..+.++|.+.
T Consensus       175 ------~~~~vs~~~~~~i~~~d~~~~~~~-~-~~~-i~~g~~~~~~~~spdg----~~~~va~~~~~~v~v~d~~~  238 (432)
T d1qksa2         175 ------PEFIVNVKETGKILLVDYTDLNNL-K-TTE-ISAERFLHDGGLDGSH----RYFITAANARNKLVVIDTKE  238 (432)
T ss_dssp             ------SEEEEEETTTTEEEEEETTCSSEE-E-EEE-EECCSSEEEEEECTTS----CEEEEEEGGGTEEEEEETTT
T ss_pred             ------CEEEEEEccCCeEEEEEccCCCcc-e-EEE-EcccCccccceECCCC----CEEEEeccccceEEEeeccc
Confidence                  345677888999999997654211 0 111 2345668899999996    545444 4566788888754

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

Probab=99.69  E-value=3.9e-14  Score=117.63  Aligned_cols=226  Identities=12%  Similarity=0.111  Sum_probs=151.1

Q ss_pred             EEEeeCCCcEEEEeecCCCceEEEEecCcccCeEEEEeeCCCCCCEE-EEEeCCCeEEEEEcCCCCceeEEEEecCCCCC
Q 022111           26 LATASSDSSIKIIGLSNSASQHLATLKGHRGPVWQVAWAHPKFGSIL-ASCSYDGQVIIWKEGNQNDWTQAHTFNDHKSS  104 (302)
Q Consensus        26 l~s~~~d~~v~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l-~s~s~D~~i~iwd~~~~~~~~~~~~~~~h~~~  104 (302)
                      .++++.|++|.+||+.+  .+.+.++... .....++|+++  |++| ++++.+++|++||+.+.   ..+.++..+. .
T Consensus         5 yV~~~~~~~v~v~D~~t--~~~~~~i~~g-~~p~~va~spd--G~~l~v~~~~~~~i~v~d~~t~---~~~~~~~~~~-~   75 (301)
T d1l0qa2           5 YIANSESDNISVIDVTS--NKVTATIPVG-SNPMGAVISPD--GTKVYVANAHSNDVSIIDTATN---NVIATVPAGS-S   75 (301)
T ss_dssp             EEEETTTTEEEEEETTT--TEEEEEEECS-SSEEEEEECTT--SSEEEEEEGGGTEEEEEETTTT---EEEEEEECSS-S
T ss_pred             EEEECCCCEEEEEECCC--CeEEEEEECC-CCceEEEEeCC--CCEEEEEECCCCEEEEEECCCC---ceeeeeeccc-c
Confidence            34667899999999865  3555566433 45678999864  7766 57778999999999775   3556666554 4


Q ss_pred             eeEEEecCCCCCcEEEEEecCCcEEEEEecCCCCeeeeeecccCCCCeEEEEeCCCCCCCceeecccCCCceeEEEeeCC
Q 022111          105 VNSIAWAPHELGLSLACGSSDGNISVFTATADGGWDTTRIDQAHPVGVTSVSWAPAMAPGALVGLGLLDPVQKLASCGCD  184 (302)
Q Consensus       105 i~~l~~~pd~~~~~l~sg~~d~~v~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~D  184 (302)
                      +..++|+++. ...++++..++.+.+|+.....  ....+  .+......+.++|++             ...++++..+
T Consensus        76 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~--~~~~~--~~~~~~~~~~~~~dg-------------~~~~~~~~~~  137 (301)
T d1l0qa2          76 PQGVAVSPDG-KQVYVTNMASSTLSVIDTTSNT--VAGTV--KTGKSPLGLALSPDG-------------KKLYVTNNGD  137 (301)
T ss_dssp             EEEEEECTTS-SEEEEEETTTTEEEEEETTTTE--EEEEE--ECSSSEEEEEECTTS-------------SEEEEEETTT
T ss_pred             cccccccccc-ccccccccccceeeecccccce--eeeec--cccccceEEEeecCC-------------Ceeeeeeccc
Confidence            6889999883 3456677788899999876432  22222  234456778888864             2456777889


Q ss_pred             CcEEEEEEecCccccccccccccCCCceeEEEeeCCCCCCccEEEEEe-cCCeEEEEEeccCCcceeeeeeccCCCcEEE
Q 022111          185 NTVKVWKMYNGIWKMDCFPALQMHSDWVRSVAWAPNLGLPKSTIASAS-QDGTVVIWTCAKEGEQWEGRVLKDFKTPVWS  263 (302)
Q Consensus       185 ~~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~l~s~s-~D~~i~iwd~~~~~~~~~~~~~~~~~~~v~~  263 (302)
                      +.+.+|+..+..    ....+. +...+..+.++|++    ..+++++ .++.+.+|+.....   .... ......+.+
T Consensus       138 ~~~~~~~~~~~~----~~~~~~-~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~---~~~~-~~~~~~~~~  204 (301)
T d1l0qa2         138 KTVSVINTVTKA----VINTVS-VGRSPKGIAVTPDG----TKVYVANFDSMSISVIDTVTNS---VIDT-VKVEAAPSG  204 (301)
T ss_dssp             TEEEEEETTTTE----EEEEEE-CCSSEEEEEECTTS----SEEEEEETTTTEEEEEETTTTE---EEEE-EECSSEEEE
T ss_pred             cceeeeeccccc----eeeecc-cCCCceEEEeeccc----cceeeeccccccccccccccee---eeec-ccccCCcce
Confidence            999999987652    222222 33457889999985    4455555 45677777765321   1111 223455788


Q ss_pred             EEEccCCCEEEEecC---C-ceEEeeecCCce
Q 022111          264 VSWSLTGNLLAVADA---N-NVTLWKEAVDGE  291 (302)
Q Consensus       264 ~~~spdg~~la~~~~---d-~i~~w~~~~~~~  291 (302)
                      ++|+++|+.++++..   + .|.+||....+.
T Consensus       205 ~~~~~~g~~~~v~~~~~~~~~v~v~D~~t~~~  236 (301)
T d1l0qa2         205 IAVNPEGTKAYVTNVDKYFNTVSMIDTGTNKI  236 (301)
T ss_dssp             EEECTTSSEEEEEEECSSCCEEEEEETTTTEE
T ss_pred             eeccccccccccccccceeeeeeeeecCCCeE
Confidence            999999998766532   2 599999765444

>d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]

Probab=99.66  E-value=1.1e-13  Score=118.96  Aligned_cols=256  Identities=12%  Similarity=0.018  Sum_probs=148.8

Q ss_pred             cccccceeEEEEccCCCEEEEee-----CCCcEEEEeecCCCceEEEEecCcccCeEEEEeeCCCCCCEEEEEe------
Q 022111            8 TGHEDTVHDVAMDFYGKRLATAS-----SDSSIKIIGLSNSASQHLATLKGHRGPVWQVAWAHPKFGSILASCS------   76 (302)
Q Consensus         8 ~~h~~~v~~~~~s~~~~~l~s~~-----~d~~v~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~s------   76 (302)
                      ..+..++.+++++|||+.++...     .++.|.+||..+  .+.+.++..+...  .+.|+|+  |++|++++      
T Consensus        17 ~~~~~p~~~~a~spdg~~~~~~~~~~~~~~~~v~v~D~~t--g~~~~~~~~~~~~--~~a~SpD--G~~l~va~~~~~~~   90 (373)
T d2madh_          17 GAADGPTNDEAPGADGRRSYINLPAHHSAIIQQWVLDAGS--GSILGHVNGGFLP--NPVAAHS--GSEFALASTSFSRI   90 (373)
T ss_pred             ccCCCCccccccCCCCCEEEEEcccccCCCceEEEEECCC--CCEEEEEeCCCCc--cEEEcCC--CCEEEEEeecCCcc
Confidence            36788999999999999887642     335677777654  5566677666543  6899874  88887764      


Q ss_pred             ----CCCeEEEEEcCCCCceeEEEEecCCCCCe-------eEEEecCCCCCcEEEEEecCCcEEEEEecCCCCeeeeeec
Q 022111           77 ----YDGQVIIWKEGNQNDWTQAHTFNDHKSSV-------NSIAWAPHELGLSLACGSSDGNISVFTATADGGWDTTRID  145 (302)
Q Consensus        77 ----~D~~i~iwd~~~~~~~~~~~~~~~h~~~i-------~~l~~~pd~~~~~l~sg~~d~~v~~~~~~~~~~~~~~~~~  145 (302)
                          .++.|.+||..+..   ....+..+....       ..+.|+|+....++.....++.+.+|+.....      ..
T Consensus        91 ~~~~~~~~v~v~D~~t~~---~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~~~~~~~~~~~~------~~  161 (373)
T d2madh_          91 AKGKRTDYVEVFDPVTFL---PIADIELPDAPRFDVGPYSWMNANTPNNADLLFFQFAAGPAVGLVVQGGSS------DD  161 (373)
T ss_pred             cccccceEEEEEECCCCc---EEEEEecCCcceeEeccCCCcEEEEeCCCcEEEEEEcCCCceEEeeccCCe------EE
Confidence                46789999998764   344444444333       44667776332223333445566666654221      00


Q ss_pred             ccCCCCeEEEEeCCCCCCCceeecccCCCceeEEEeeCCCcEEEEEEecCccccccc-----------------------
Q 022111          146 QAHPVGVTSVSWAPAMAPGALVGLGLLDPVQKLASCGCDNTVKVWKMYNGIWKMDCF-----------------------  202 (302)
Q Consensus       146 ~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~D~~v~iwd~~~~~~~~~~~-----------------------  202 (302)
                       .+.....++.++|++             ...+++.+.|+.+.+||...........                       
T Consensus       162 -~~~~~~~~~~~s~~g-------------~~~~v~~~~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  227 (373)
T d2madh_         162 -QLLSSPTCYHIHPGA-------------PSTFYLLCAQGGLAKTDHAGGAAGAGLVGAMLTAAQNLLTQPAQANKSGRI  227 (373)
T ss_pred             -EEeccceeEEEecCC-------------CcEEEEEcCCCeEEEEEcCCceeeEEEeeeccccCccceeeeEEECCCceE
Confidence             222334566777754             2467888899999999975432110000                       


Q ss_pred             ---------cccccCCC-----------------------ceeEEEeeCCCCC------CccEEEEEecCCeEEEEEecc
Q 022111          203 ---------PALQMHSD-----------------------WVRSVAWAPNLGL------PKSTIASASQDGTVVIWTCAK  244 (302)
Q Consensus       203 ---------~~~~~h~~-----------------------~v~~v~~~p~~~~------~~~~l~s~s~D~~i~iwd~~~  244 (302)
                               ..+.....                       ....++++|++..      .+..+++...++.+.+||...
T Consensus       228 ~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~~~d~~t  307 (373)
T d2madh_         228 VWPVYSGKILQADISAAGATNKAPIDALSGGRKADTWRPGGWQQVAYLKSSDGIYLLTSEQSAWKLHAAAKEVTSVTGLV  307 (373)
T ss_pred             EEecCCceEEEEEcCCCeEEEEEeeccccCcEEeeeeccCcceeeEEecCCCeEEEecCCCceEEeecCCCeEEEEECCC
Confidence                     00000000                       0112233443310      123344556667778887765


Q ss_pred             CCcceeeeeeccCCCcEEEEEEccCCCE--EEEecCC-ceEEeeecCCceEEEee
Q 022111          245 EGEQWEGRVLKDFKTPVWSVSWSLTGNL--LAVADAN-NVTLWKEAVDGEWQQVS  296 (302)
Q Consensus       245 ~~~~~~~~~~~~~~~~v~~~~~spdg~~--la~~~~d-~i~~w~~~~~~~~~~~~  296 (302)
                      ....   . ...+...+.+++|||||+.  +++++.+ .|++||....+.....+
T Consensus       308 ~~~~---~-~~~~~~~~~~~a~spDG~~~l~vt~~~d~~v~v~D~~tg~~~~~~~  358 (373)
T d2madh_         308 GQTS---S-QISLGHDVDAISVAQDGGPDLYALSAGTEVLHIYDAGAGDQDQSTV  358 (373)
T ss_pred             CcEE---E-EecCCCCeeEEEECCCCCEEEEEEeCCCCeEEEEECCCCCEEEEEC
Confidence            4221   1 1234567889999999984  3556666 79999997665544443

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.65  E-value=2.5e-14  Score=120.59  Aligned_cols=211  Identities=14%  Similarity=0.106  Sum_probs=127.3

Q ss_pred             cccceeEEEEccCCCEE-EEeeCCCcEEEEeecCCCceEEEEecCc-----ccCeEEEEeeCCCCCCEEEEEe-------
Q 022111           10 HEDTVHDVAMDFYGKRL-ATASSDSSIKIIGLSNSASQHLATLKGH-----RGPVWQVAWAHPKFGSILASCS-------   76 (302)
Q Consensus        10 h~~~v~~~~~s~~~~~l-~s~~~d~~v~lw~~~~~~~~~~~~~~~h-----~~~v~~v~~~~~~~~~~l~s~s-------   76 (302)
                      +...+.+++|+|||++| ++++.++.|++||+.+.  +.+..+..+     ...+..++|+++  ++++++++       
T Consensus        32 ~~~~~~~i~~spDg~~l~v~~~~~~~v~v~D~~t~--~~~~~~~~~~~~~~~~~~~~v~~s~d--g~~l~~~~~~~~~~~  107 (337)
T d1pbyb_          32 AGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTG--ETLGRIDLSTPEERVKSLFGAALSPD--GKTLAIYESPVRLEL  107 (337)
T ss_dssp             CTTCCCCEEECTTSSEEEEEETTTTEEEEEETTTC--CEEEEEECCBTTEEEECTTCEEECTT--SSEEEEEEEEEEECS
T ss_pred             CCCCccEEEECCCCCEEEEEECCCCeEEEEECCCC--cEEEEEecCCCcccccceeeEEEcCC--CcEEEEeecCCccee
Confidence            33457789999999987 56678999999998763  344444433     234457888764  77777665       


Q ss_pred             -----CCCeEEEEEcCCCCceeEEEEecCCCCCeeEEEecCCCCCcEEEEEecCCcEEEEEecCCCCeeeeeec------
Q 022111           77 -----YDGQVIIWKEGNQNDWTQAHTFNDHKSSVNSIAWAPHELGLSLACGSSDGNISVFTATADGGWDTTRID------  145 (302)
Q Consensus        77 -----~D~~i~iwd~~~~~~~~~~~~~~~h~~~i~~l~~~pd~~~~~l~sg~~d~~v~~~~~~~~~~~~~~~~~------  145 (302)
                           .+..+.+||....   .....+. +...+..++|+||  +.++++++.+  +.+||.............      
T Consensus       108 ~~~~~~~~~~~~~d~~~~---~~~~~~~-~~~~~~~~~~s~d--g~~l~~~~~~--~~~~d~~~~~~~~~~~~~~~~~~~  179 (337)
T d1pbyb_         108 THFEVQPTRVALYDAETL---SRRKAFE-APRQITMLAWARD--GSKLYGLGRD--LHVMDPEAGTLVEDKPIQSWEAET  179 (337)
T ss_dssp             SCEEECCCEEEEEETTTT---EEEEEEE-CCSSCCCEEECTT--SSCEEEESSS--EEEEETTTTEEEEEECSTTTTTTT
T ss_pred             eeccccccceeeccccCC---eEEEecc-ccCCceEEEEcCC--CCEEEEEcCC--cceeeeecCcEEEEeecCCccccc
Confidence                 3677888887665   2344444 4456889999998  6678877644  566776432111000000      


Q ss_pred             ------------ccCC---------------------------------CCeEEEEeCCCCCCCceeecccCCCceeEEE
Q 022111          146 ------------QAHP---------------------------------VGVTSVSWAPAMAPGALVGLGLLDPVQKLAS  180 (302)
Q Consensus       146 ------------~~h~---------------------------------~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~s  180 (302)
                                  ..+.                                 ..+....+.+..  .........+++.+++.
T Consensus       180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~  257 (337)
T d1pbyb_         180 YAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMREVRIMD--VFYFSTAVNPAKTRAFG  257 (337)
T ss_dssp             BCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCEEEEEEEECS--SCEEEEEECTTSSEEEE
T ss_pred             eecCCcceeeccccccceeeeeeeeeeeccceeeecccCccEEEEEcCCCcEEEEEecCCC--cceEEEEecccceEEEE
Confidence                        0000                                 000000010000  00001111223334433


Q ss_pred             eeCCCcEEEEEEecCccccccccccccCCCceeEEEeeCCCCCCccEEEEEecCCeEEEEEeccC
Q 022111          181 CGCDNTVKVWKMYNGIWKMDCFPALQMHSDWVRSVAWAPNLGLPKSTIASASQDGTVVIWTCAKE  245 (302)
Q Consensus       181 ~~~D~~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~l~s~s~D~~i~iwd~~~~  245 (302)
                        .++.+++||+.++.    .+..+ .+...+.+++|+||+    ++|++++.|++|+|||.++.
T Consensus       258 --~~~~i~v~d~~~~~----~~~~~-~~~~~~~~~~~s~dG----~~l~v~~~~~~i~v~D~~t~  311 (337)
T d1pbyb_         258 --AYNVLESFDLEKNA----SIKRV-PLPHSYYSVNVSTDG----STVWLGGALGDLAAYDAETL  311 (337)
T ss_dssp             --EESEEEEEETTTTE----EEEEE-ECSSCCCEEEECTTS----CEEEEESBSSEEEEEETTTC
T ss_pred             --ccccEEEEECCCCc----EEEEE-cCCCCEEEEEECCCC----CEEEEEeCCCcEEEEECCCC
Confidence              36889999998763    22222 356678999999996    78999999999999999764

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.59  E-value=3e-14  Score=121.56  Aligned_cols=261  Identities=12%  Similarity=0.064  Sum_probs=145.6

Q ss_pred             EEEccCCCEEEEee-----CCCcEEEEeecCCCceEEEEecCcccCeEEEEeeCCCCCCEEEEE----------eCCCeE
Q 022111           17 VAMDFYGKRLATAS-----SDSSIKIIGLSNSASQHLATLKGHRGPVWQVAWAHPKFGSILASC----------SYDGQV   81 (302)
Q Consensus        17 ~~~s~~~~~l~s~~-----~d~~v~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~----------s~D~~i   81 (302)
                      .+.+||++.++...     .+.+|.+||..+  .+.+.++..+.  ...++|+|+  |++|+..          +.|+.|
T Consensus         7 ~a~spdg~~~~v~~~~~~~~~~~v~v~D~~t--g~~~~~~~~g~--~~~~a~SpD--g~~l~v~~~~~~~~~~g~~d~~v   80 (355)
T d2bbkh_           7 EAPAPDARRVYVNDPAHFAAVTQQFVIDGEA--GRVIGMIDGGF--LPNPVVADD--GSFIAHASTVFSRIARGERTDYV   80 (355)
T ss_dssp             CCCCCCTTEEEEEECGGGCSSEEEEEEETTT--TEEEEEEEECS--SCEEEECTT--SSCEEEEEEEEEETTEEEEEEEE
T ss_pred             EeeCCCCCEEEEEecccCCCcCeEEEEECCC--CcEEEEEECCC--CCceEEcCC--CCEEEEEeCCCccccccCCCCEE
Confidence            35689999887653     466799999765  45666776544  347899875  7766643          347899


Q ss_pred             EEEEcCCCCceeEEEEecCC----CCCeeEEEecCCCCCcEEEEE--ecCCcEEEEEecCCCCeeeeeeccc----CCCC
Q 022111           82 IIWKEGNQNDWTQAHTFNDH----KSSVNSIAWAPHELGLSLACG--SSDGNISVFTATADGGWDTTRIDQA----HPVG  151 (302)
Q Consensus        82 ~iwd~~~~~~~~~~~~~~~h----~~~i~~l~~~pd~~~~~l~sg--~~d~~v~~~~~~~~~~~~~~~~~~~----h~~~  151 (302)
                      ++||..+......+.....+    ......++|+|+  +.+++.+  +.+..+.+|+...............    ....
T Consensus        81 ~v~D~~t~~~~~~~~~~~~~~~~~~~~~~~~~~s~d--g~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  158 (355)
T d2bbkh_          81 EVFDPVTLLPTADIELPDAPRFLVGTYPWMTSLTPD--GKTLLFYQFSPAPAVGVVDLEGKAFKRMLDVPDCYHIFPTAP  158 (355)
T ss_dssp             EEECTTTCCEEEEEEETTCCCCCBSCCGGGEEECTT--SSEEEEEECSSSCEEEEEETTTTEEEEEEECCSEEEEEEEET
T ss_pred             EEEECCCCCEEEEEecCCcceeecCCCCceEEEecC--CCeeEEecCCCCceeeeeecCCCcEeeEEecCCcceEeecCC
Confidence            99999876432222111111    123456889998  4455544  4567888888754321111110000    0001


Q ss_pred             eEEEEeCCCCCC--------C--cee--------------ecccCCCceeEEEeeCCCcEEEEEEecCcccccccccccc
Q 022111          152 VTSVSWAPAMAP--------G--ALV--------------GLGLLDPVQKLASCGCDNTVKVWKMYNGIWKMDCFPALQM  207 (302)
Q Consensus       152 v~~~~~~~~~~~--------~--~~~--------------~~~~~~~~~~l~s~~~D~~v~iwd~~~~~~~~~~~~~~~~  207 (302)
                      ...+.+++++..        .  ...              ......++..++.++.++.+++|++..+...  .+....+
T Consensus       159 ~~~~~~~~dg~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~--~~~~~~~  236 (355)
T d2bbkh_         159 DTFFMHCRDGSLAKVAFGTEGTPEITHTEVFHPEDEFLINHPAYSQKAGRLVWPTYTGKIHQIDLSSGDAK--FLPAVEA  236 (355)
T ss_dssp             TEEEEEETTSCEEEEECCSSSCCEEEECCCCSCTTSCBCSCCEEETTTTEEEEEBTTSEEEEEECTTSSCE--ECCCEES
T ss_pred             cceEEEcCCCCEEEEEecCCCeEEEEecccccceecceeeeccccCCCCeEEEecCCCeEEEEecCCCcEE--EEeccCC
Confidence            122333333210        0  000              0011234567888899999999998765311  1111111


Q ss_pred             C----------CCceeEEEeeCCCCCCccEEEEEecC----------CeEEEEEeccCCcceeeeeeccCCCcEEEEEEc
Q 022111          208 H----------SDWVRSVAWAPNLGLPKSTIASASQD----------GTVVIWTCAKEGEQWEGRVLKDFKTPVWSVSWS  267 (302)
Q Consensus       208 h----------~~~v~~v~~~p~~~~~~~~l~s~s~D----------~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~s  267 (302)
                      +          ......++++|++    ..++..+.+          ..|++||..+....  ..+  .....+.+++||
T Consensus       237 ~~~~~~~~~~~p~~~~~~~~~~d~----~~~~~~~~~~~~~~~~~~~~~v~v~d~~t~~~~--~~~--~~~~~~~~~a~s  308 (355)
T d2bbkh_         237 LTEAERADGWRPGGWQQVAYHRAL----DRIYLLVDQRDEWRHKTASRFVVVLDAKTGERL--AKF--EMGHEIDSINVS  308 (355)
T ss_dssp             SCHHHHHTTEEECSSSCEEEETTT----TEEEEEEEECCTTCTTSCEEEEEEEETTTCCEE--EEE--EEEEEECEEEEC
T ss_pred             cccceEeeeeeccceEEEEEeCCC----CeEEEEeccCCceeecCCCCeEEEEeCCCCcEE--EEe--cCCCCEEEEEEc
Confidence            1          1223457888885    444443332          36999998764321  111  223457899999


Q ss_pred             cCCCE--EEEecCC-ceEEeeecCCceEEEe
Q 022111          268 LTGNL--LAVADAN-NVTLWKEAVDGEWQQV  295 (302)
Q Consensus       268 pdg~~--la~~~~d-~i~~w~~~~~~~~~~~  295 (302)
                      |||+.  ++++..+ .|++||....+....+
T Consensus       309 pDG~~~l~v~~~~d~~i~v~D~~tg~~~~~i  339 (355)
T d2bbkh_         309 QDEKPLLYALSTGDKTLYIHDAESGEELRSV  339 (355)
T ss_dssp             CSSSCEEEEEETTTTEEEEEETTTCCEEEEE
T ss_pred             CCCCeEEEEEECCCCEEEEEECCCCCEEEEE
Confidence            99973  4555555 7999998755444333

>d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Putative isomerase YbhE
family: Putative isomerase YbhE
domain: Putative isomerase YbhE
species: Escherichia coli [TaxId: 562]

Probab=99.55  E-value=8.9e-13  Score=110.92  Aligned_cols=193  Identities=13%  Similarity=0.145  Sum_probs=127.7

Q ss_pred             EEEEEeCCCeEEEEEcCCCCceeEEEEecCCCCCeeEEEecCCCCCcEE-EEEecCCcEEEEEecCCCCeeeeeecccCC
Q 022111           71 ILASCSYDGQVIIWKEGNQNDWTQAHTFNDHKSSVNSIAWAPHELGLSL-ACGSSDGNISVFTATADGGWDTTRIDQAHP  149 (302)
Q Consensus        71 ~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~h~~~i~~l~~~pd~~~~~l-~sg~~d~~v~~~~~~~~~~~~~~~~~~~h~  149 (302)
                      .+++++.|++|++|++......+.++.+. |.+.+..|+|+||  |++| +++..|+.|++|++..............+.
T Consensus         6 v~v~~~~~~~I~v~~~~~~~~l~~~~~~~-~~~~v~~la~spD--G~~L~v~~~~d~~i~~~~i~~~~~~~~~~~~~~~~   82 (333)
T d1ri6a_           6 VYIASPESQQIHVWNLNHEGALTLTQVVD-VPGQVQPMVVSPD--KRYLYVGVRPEFRVLAYRIAPDDGALTFAAESALP   82 (333)
T ss_dssp             EEEEEGGGTEEEEEEECTTSCEEEEEEEE-CSSCCCCEEECTT--SSEEEEEETTTTEEEEEEECTTTCCEEEEEEEECS
T ss_pred             EEEECCCCCcEEEEEEcCCCCeEEEEEEc-CCCCEeEEEEeCC--CCEEEEEECCCCeEEEEEEeCCCCcEEEeeecccC
Confidence            46788899999999997654444444444 7789999999999  6666 555568999999987543322111111334


Q ss_pred             CCeEEEEeCCCCCCCceeecccCCCceeEEEee-CCCcEEEEEEecCccccccccccccCCCceeEEEeeCCCCCCccEE
Q 022111          150 VGVTSVSWAPAMAPGALVGLGLLDPVQKLASCG-CDNTVKVWKMYNGIWKMDCFPALQMHSDWVRSVAWAPNLGLPKSTI  228 (302)
Q Consensus       150 ~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~-~D~~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~l  228 (302)
                      ..+..++|+|++              ++|++++ .++.+.+|+.......  .......+...+.++.++|++    +.+
T Consensus        83 ~~p~~l~~spDg--------------~~l~v~~~~~~~v~~~~~~~~~~~--~~~~~~~~~~~~~~v~~s~d~----~~~  142 (333)
T d1ri6a_          83 GSLTHISTDHQG--------------QFVFVGSYNAGNVSVTRLEDGLPV--GVVDVVEGLDGCHSANISPDN----RTL  142 (333)
T ss_dssp             SCCSEEEECTTS--------------SEEEEEETTTTEEEEEEEETTEEE--EEEEEECCCTTBCCCEECTTS----SEE
T ss_pred             CCceEEEEcCCC--------------CEEeecccCCCceeeeccccccce--ecccccCCCccceEEEeeecc----eee
Confidence            456778999864              6666665 4778999998765321  112334566778899999996    555


Q ss_pred             EEEe-cCCeEEEEEeccCCcceeee---eeccCCCcEEEEEEccCCCEEEEecCC--ceEEeee
Q 022111          229 ASAS-QDGTVVIWTCAKEGEQWEGR---VLKDFKTPVWSVSWSLTGNLLAVADAN--NVTLWKE  286 (302)
Q Consensus       229 ~s~s-~D~~i~iwd~~~~~~~~~~~---~~~~~~~~v~~~~~spdg~~la~~~~d--~i~~w~~  286 (302)
                      +.++ .+..|.+|+...........   ...........++|++++.++......  ...+|+.
T Consensus       143 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~g~~p~~i~~~~~~~~~~~~~~~~~~~~v~~~  206 (333)
T d1ri6a_         143 WVPALKQDRICLFTVSDDGHLVAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWEL  206 (333)
T ss_dssp             EEEEGGGTEEEEEEECTTSCEEEEEEEEEECSTTCCEEEEEECTTSSEEEEEETTTTEEEEEES
T ss_pred             eccccccceeeEEEeccCCcceeeeceeeeeecCCCccEEEEeccceeEEeeccccCceEEEee
Confidence            5555 56689999987643221111   112233457889999999888766443  5677764

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

Probab=99.42  E-value=1.1e-11  Score=104.18  Aligned_cols=217  Identities=8%  Similarity=-0.050  Sum_probs=118.4

Q ss_pred             ccccceeEEEEccCCCEE-EEeeCCCcEEEEeecCCCceEEEEecC------cccCeEEEEeeCCCCCCEEEEEe-----
Q 022111            9 GHEDTVHDVAMDFYGKRL-ATASSDSSIKIIGLSNSASQHLATLKG------HRGPVWQVAWAHPKFGSILASCS-----   76 (302)
Q Consensus         9 ~h~~~v~~~~~s~~~~~l-~s~~~d~~v~lw~~~~~~~~~~~~~~~------h~~~v~~v~~~~~~~~~~l~s~s-----   76 (302)
                      .|...+.+++|+|||++| ++++.++.|++||+...  +.+..+..      +...+..++|+++  |++++.++     
T Consensus        37 ~~~~~p~~l~~spDG~~l~v~~~~~~~v~~~d~~t~--~~~~~~~~~~~~~~~~~~~~~v~~s~D--G~~l~v~~~~~~~  112 (346)
T d1jmxb_          37 PDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTC--KNTFHANLSSVPGEVGRSMYSFAISPD--GKEVYATVNPTQR  112 (346)
T ss_dssp             SSCCSSCEEEECTTSSEEEEEETTTTEEEEEETTTT--EEEEEEESCCSTTEEEECSSCEEECTT--SSEEEEEEEEEEE
T ss_pred             CCCCCcceEEECCCCCEEEEEECCCCcEEEEeCccC--eeeeeecccccccccCCceEEEEEecC--CCEEEEEecCCcc
Confidence            455667899999999987 45567899999998653  33333321      2234567888864  77776654     


Q ss_pred             -------CCCeEEEEEcCCCCceeEEEEecCCCCCeeEEEecCCCCCcEEEEEecCCcEEEEEecCCCCeeeeeec----
Q 022111           77 -------YDGQVIIWKEGNQNDWTQAHTFNDHKSSVNSIAWAPHELGLSLACGSSDGNISVFTATADGGWDTTRID----  145 (302)
Q Consensus        77 -------~D~~i~iwd~~~~~~~~~~~~~~~h~~~i~~l~~~pd~~~~~l~sg~~d~~v~~~~~~~~~~~~~~~~~----  145 (302)
                             .+..+.+|+..+........... ....+..+.++++  +..++++   ..+.+|+..+..........    
T Consensus       113 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~--~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~  186 (346)
T d1jmxb_         113 LNDHYVVKPPRLEVFSTADGLEAKPVRTFP-MPRQVYLMRAADD--GSLYVAG---PDIYKMDVKTGKYTVALPLRNWNR  186 (346)
T ss_dssp             CSSCEEECCCEEEEEEGGGGGGBCCSEEEE-CCSSCCCEEECTT--SCEEEES---SSEEEECTTTCCEEEEECSTTCCC
T ss_pred             eeeeeccCcceEEEEecccceeeeEEEeee-ccCceEEEEecCC--CEEEEeC---CcceEEEccCCCEEEEEecCCCcc
Confidence                   47788888876543221111111 2233455556555  3344332   34566654322111000000    


Q ss_pred             ------------ccC--CCCeE-----------------------EEEeCCCCC----------CCceeecccCCCceeE
Q 022111          146 ------------QAH--PVGVT-----------------------SVSWAPAMA----------PGALVGLGLLDPVQKL  178 (302)
Q Consensus       146 ------------~~h--~~~v~-----------------------~~~~~~~~~----------~~~~~~~~~~~~~~~l  178 (302)
                                  ..+  ...+.                       -..|.....          ..........+++..+
T Consensus       187 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  266 (346)
T d1jmxb_         187 KGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSVDLKTGKTHTQEFADLTELYFTGLRSPKDPNQ  266 (346)
T ss_dssp             TTBCCCBCCCCCCCCCTTCEEEEEEEEEEC-------CCCEEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECSSCTTE
T ss_pred             ceEEeccccEEEEEecCCCceEeeeeeeeeccCceeEeeccCCceEEEEECCCCceEEEEeecccceeEEEEEeCCCCEE
Confidence                        000  00000                       000110000          0011112223344555


Q ss_pred             EEeeCCCcEEEEEEecCccccccccccccCCCceeEEEeeCCCCCCccEEEEEecCCeEEEEEeccC
Q 022111          179 ASCGCDNTVKVWKMYNGIWKMDCFPALQMHSDWVRSVAWAPNLGLPKSTIASASQDGTVVIWTCAKE  245 (302)
Q Consensus       179 ~s~~~D~~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~l~s~s~D~~i~iwd~~~~  245 (302)
                      +.+. ++.|++||+.++.    .+..+ .+...+.+++|+||+    ++|++++.|+.|+|||.++.
T Consensus       267 ~~~~-~~~v~v~d~~~~~----~~~~~-~~~~~~~~va~s~DG----~~l~v~~~d~~v~v~D~~t~  323 (346)
T d1jmxb_         267 IYGV-LNRLAKYDLKQRK----LIKAA-NLDHTYYCVAFDKKG----DKLYLGGTFNDLAVFNPDTL  323 (346)
T ss_dssp             EEEE-ESEEEEEETTTTE----EEEEE-ECSSCCCEEEECSSS----SCEEEESBSSEEEEEETTTT
T ss_pred             EEec-CCeEEEEECCCCc----EEEEE-cCCCCEEEEEEcCCC----CEEEEEeCCCcEEEEECccC
Confidence            5554 4579999987763    22222 234568999999996    77999999999999999764

>d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]

Probab=99.41  E-value=1e-10  Score=99.91  Aligned_cols=231  Identities=12%  Similarity=0.033  Sum_probs=129.0

Q ss_pred             EEEEccCCCEEEEee----------CCCcEEEEeecCCCceEEEEecCcccCe-------EEEEeeCCCCCCEEEE--Ee
Q 022111           16 DVAMDFYGKRLATAS----------SDSSIKIIGLSNSASQHLATLKGHRGPV-------WQVAWAHPKFGSILAS--CS   76 (302)
Q Consensus        16 ~~~~s~~~~~l~s~~----------~d~~v~lw~~~~~~~~~~~~~~~h~~~v-------~~v~~~~~~~~~~l~s--~s   76 (302)
                      .+.|+|||++|++++          .++.|++||....  +.+..+..+....       ..+.|+++  ++.++.  ..
T Consensus        70 ~~a~SpDG~~l~va~~~~~~~~~~~~~~~v~v~D~~t~--~~~~~~~~~~~~~~~~~~~~~~~~~s~d--g~~~~v~~~~  145 (373)
T d2madh_          70 NPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPVTF--LPIADIELPDAPRFDVGPYSWMNANTPN--NADLLFFQFA  145 (373)
T ss_pred             cEEEcCCCCEEEEEeecCCcccccccceEEEEEECCCC--cEEEEEecCCcceeEeccCCCcEEEEeC--CCcEEEEEEc
Confidence            589999999998875          4578999998653  3444554444333       23556553  444333  34


Q ss_pred             CCCeEEEEEcCCCCceeEEEEecCCCCCeeEEEecCCCCCcEEEEEecCCcEEEEEecCCCCeeeeeec---cc------
Q 022111           77 YDGQVIIWKEGNQNDWTQAHTFNDHKSSVNSIAWAPHELGLSLACGSSDGNISVFTATADGGWDTTRID---QA------  147 (302)
Q Consensus        77 ~D~~i~iwd~~~~~~~~~~~~~~~h~~~i~~l~~~pd~~~~~l~sg~~d~~v~~~~~~~~~~~~~~~~~---~~------  147 (302)
                      .+..+.+|+.....   ..    .+.....++.++|+. ...+++.+.|+.+.+|+.............   ..      
T Consensus       146 ~~~~~~~~~~~~~~---~~----~~~~~~~~~~~s~~g-~~~~v~~~~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  217 (373)
T d2madh_         146 AGPAVGLVVQGGSS---DD----QLLSSPTCYHIHPGA-PSTFYLLCAQGGLAKTDHAGGAAGAGLVGAMLTAAQNLLTQ  217 (373)
T ss_pred             CCCceEEeeccCCe---EE----EEeccceeEEEecCC-CcEEEEEcCCCeEEEEEcCCceeeEEEeeeccccCccceee
Confidence            45677778765432   11    233456788899884 245678889999999986532211100000   00      


Q ss_pred             --------------CCCCeE-----------------------EEEeCCCCCCCce------eecccCCCceeEEEeeCC
Q 022111          148 --------------HPVGVT-----------------------SVSWAPAMAPGAL------VGLGLLDPVQKLASCGCD  184 (302)
Q Consensus       148 --------------h~~~v~-----------------------~~~~~~~~~~~~~------~~~~~~~~~~~l~s~~~D  184 (302)
                                    ....+.                       ...+.|.......      .......++..+++...+
T Consensus       218 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~  297 (373)
T d2madh_         218 PAQANKSGRIVWPVYSGKILQADISAAGATNKAPIDALSGGRKADTWRPGGWQQVAYLKSSDGIYLLTSEQSAWKLHAAA  297 (373)
T ss_pred             eEEECCCceEEEecCCceEEEEEcCCCeEEEEEeeccccCcEEeeeeccCcceeeEEecCCCeEEEecCCCceEEeecCC
Confidence                          000000                       0000000000000      000011223456677778


Q ss_pred             CcEEEEEEecCccccccccccccCCCceeEEEeeCCCCCCccEEEEEecCCeEEEEEeccCCcceeeeeeccCCCcEEEE
Q 022111          185 NTVKVWKMYNGIWKMDCFPALQMHSDWVRSVAWAPNLGLPKSTIASASQDGTVVIWTCAKEGEQWEGRVLKDFKTPVWSV  264 (302)
Q Consensus       185 ~~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~  264 (302)
                      +.+.+||..++.    .+..+ .+...+.+++|+||+.  ...+++++.|++|++||+.+.+.   ...+..+......+
T Consensus       298 ~~v~~~d~~t~~----~~~~~-~~~~~~~~~a~spDG~--~~l~vt~~~d~~v~v~D~~tg~~---~~~~~~~g~~P~~l  367 (373)
T d2madh_         298 KEVTSVTGLVGQ----TSSQI-SLGHDVDAISVAQDGG--PDLYALSAGTEVLHIYDAGAGDQ---DQSTVELGSGPQVL  367 (373)
T ss_pred             CeEEEEECCCCc----EEEEe-cCCCCeeEEEECCCCC--EEEEEEeCCCCeEEEEECCCCCE---EEEECCCCCCCcEE
Confidence            889999987763    22222 3566789999999962  12467899999999999986532   12234444445556


Q ss_pred             EEcc
Q 022111          265 SWSL  268 (302)
Q Consensus       265 ~~sp  268 (302)
                      ++.+
T Consensus       368 ~~~~  371 (373)
T d2madh_         368 SVMN  371 (373)
T ss_pred             EEec
Confidence            5543

>d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl peptidase IV/CD26, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=99.35  E-value=3.9e-10  Score=99.89  Aligned_cols=119  Identities=18%  Similarity=0.273  Sum_probs=82.9

Q ss_pred             cccccccceeEEEEccCCCEEEEeeC---------CCcEEEEeecCCCceEEEEecCcccCeEEEEeeCCCCCCEEEEEe
Q 022111            6 IETGHEDTVHDVAMDFYGKRLATASS---------DSSIKIIGLSNSASQHLATLKGHRGPVWQVAWAHPKFGSILASCS   76 (302)
Q Consensus         6 ~~~~h~~~v~~~~~s~~~~~l~s~~~---------d~~v~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~s   76 (302)
                      .+..|...|.++.|||||++||.++.         ++.+.|||+.++   .+..+..|...+..+.|+|+  |++||.. 
T Consensus        56 ~~~~~~~~i~~~~~SpDg~~i~~~~~~~~~~r~s~~~~~~l~d~~~~---~~~~l~~~~~~~~~~~~SPD--G~~ia~~-  129 (470)
T d2bgra1          56 TFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTASYDIYDLNKR---QLITEERIPNNTQWVTWSPV--GHKLAYV-  129 (470)
T ss_dssp             TTTTSSSCCCEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTT---EECCSSCCCTTEEEEEECSS--TTCEEEE-
T ss_pred             hhhhccCccceeEECCCCCEEEEEECCcceeeeccCceEEEEECCCC---cccccccCCccccccccccC--cceeeEe-
Confidence            45567788999999999999998753         467889998753   24567788899999999975  8998885 


Q ss_pred             CCCeEEEEEcCCCCceeEEE------EecC---------CCCCeeEEEecCCCCCcEEEEEecCCc-EEEEE
Q 022111           77 YDGQVIIWKEGNQNDWTQAH------TFND---------HKSSVNSIAWAPHELGLSLACGSSDGN-ISVFT  132 (302)
Q Consensus        77 ~D~~i~iwd~~~~~~~~~~~------~~~~---------h~~~i~~l~~~pd~~~~~l~sg~~d~~-v~~~~  132 (302)
                      .+..+.+|+..++.......      .+.+         ..+....+.|+||  |+.||....|.. +..|.
T Consensus       130 ~~~~l~~~~~~~g~~~~~t~~~~~~~~~~g~~d~~~~~~~~~~~~~~~wSPD--Gk~ia~~~~d~~~v~~~~  199 (470)
T d2bgra1         130 WNNDIYVKIEPNLPSYRITWTGKEDIIYNGITDWVYEEEVFSAYSALWWSPN--GTFLAYAQFNDTEVPLIE  199 (470)
T ss_dssp             ETTEEEEESSTTSCCEECCSCCBTTTEEESBCCHHHHHHTSSSSBCEEECTT--SSEEEEEEEECTTCCEEE
T ss_pred             ecccceEEECCCCceeeeeeccCCCcccccccceeeeeeecCCccccEECCC--CCccceeEecCCcCceEE
Confidence            56789999876653211110      0000         2234567889999  678888766533 44443

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.32  E-value=1e-11  Score=105.36  Aligned_cols=203  Identities=13%  Similarity=0.077  Sum_probs=110.9

Q ss_pred             eEEEEccCCCEEEEee----------CCCcEEEEeecCCCceEEEEecCcc-------cCeEEEEeeCCCCCCEEEEE--
Q 022111           15 HDVAMDFYGKRLATAS----------SDSSIKIIGLSNSASQHLATLKGHR-------GPVWQVAWAHPKFGSILASC--   75 (302)
Q Consensus        15 ~~~~~s~~~~~l~s~~----------~d~~v~lw~~~~~~~~~~~~~~~h~-------~~v~~v~~~~~~~~~~l~s~--   75 (302)
                      ..++|||||++|++++          .|+.|++||..+..  .+..+..+.       .....++|+++  +++++.+  
T Consensus        50 ~~~a~SpDg~~l~v~~~~~~~~~~g~~d~~v~v~D~~t~~--~~~~~~~~~~~~~~~~~~~~~~~~s~d--g~~~~v~~~  125 (355)
T d2bbkh_          50 PNPVVADDGSFIAHASTVFSRIARGERTDYVEVFDPVTLL--PTADIELPDAPRFLVGTYPWMTSLTPD--GKTLLFYQF  125 (355)
T ss_dssp             CEEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCC--EEEEEEETTCCCCCBSCCGGGEEECTT--SSEEEEEEC
T ss_pred             CceEEcCCCCEEEEEeCCCccccccCCCCEEEEEECCCCC--EEEEEecCCcceeecCCCCceEEEecC--CCeeEEecC
Confidence            3689999999887643          47899999987643  333332221       12245788764  6666555  


Q ss_pred             eCCCeEEEEEcCCCCceeEEEE------------------------------------------ecCCCCCeeEEEecCC
Q 022111           76 SYDGQVIIWKEGNQNDWTQAHT------------------------------------------FNDHKSSVNSIAWAPH  113 (302)
Q Consensus        76 s~D~~i~iwd~~~~~~~~~~~~------------------------------------------~~~h~~~i~~l~~~pd  113 (302)
                      +.+..+.+|+..+......+..                                          ...+...+....+.++
T Consensus       126 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  205 (355)
T d2bbkh_         126 SPAPAVGVVDLEGKAFKRMLDVPDCYHIFPTAPDTFFMHCRDGSLAKVAFGTEGTPEITHTEVFHPEDEFLINHPAYSQK  205 (355)
T ss_dssp             SSSCEEEEEETTTTEEEEEEECCSEEEEEEEETTEEEEEETTSCEEEEECCSSSCCEEEECCCCSCTTSCBCSCCEEETT
T ss_pred             CCCceeeeeecCCCcEeeEEecCCcceEeecCCcceEEEcCCCCEEEEEecCCCeEEEEecccccceecceeeeccccCC
Confidence            4567889998765431110000                                          0011122233344443


Q ss_pred             CCCcEEEEEecCCcEEEEEecCCCCeeeeeecccCCC----------CeEEEEeCCCCCCCceeecccCCCceeEEEee-
Q 022111          114 ELGLSLACGSSDGNISVFTATADGGWDTTRIDQAHPV----------GVTSVSWAPAMAPGALVGLGLLDPVQKLASCG-  182 (302)
Q Consensus       114 ~~~~~l~sg~~d~~v~~~~~~~~~~~~~~~~~~~h~~----------~v~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~-  182 (302)
                        +..++.++.++.+.+|++............ .+..          ....+.++++              +..++... 
T Consensus       206 --~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~-~~~~~~~~~~~~p~~~~~~~~~~d--------------~~~~~~~~~  268 (355)
T d2bbkh_         206 --AGRLVWPTYTGKIHQIDLSSGDAKFLPAVE-ALTEAERADGWRPGGWQQVAYHRA--------------LDRIYLLVD  268 (355)
T ss_dssp             --TTEEEEEBTTSEEEEEECTTSSCEECCCEE-SSCHHHHHTTEEECSSSCEEEETT--------------TTEEEEEEE
T ss_pred             --CCeEEEecCCCeEEEEecCCCcEEEEeccC-CcccceEeeeeeccceEEEEEeCC--------------CCeEEEEec
Confidence              335666677777777776543211111000 1111          1112333332              22322221 


Q ss_pred             ---------CCCcEEEEEEecCccccccccccccCCCceeEEEeeCCCCCCccEEEEEecCCeEEEEEeccC
Q 022111          183 ---------CDNTVKVWKMYNGIWKMDCFPALQMHSDWVRSVAWAPNLGLPKSTIASASQDGTVVIWTCAKE  245 (302)
Q Consensus       183 ---------~D~~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~l~s~s~D~~i~iwd~~~~  245 (302)
                               .++.|.+||+.++.    .+..+. +...+.+++|+||+.  ...+++++.|+.|++||.++.
T Consensus       269 ~~~~~~~~~~~~~v~v~d~~t~~----~~~~~~-~~~~~~~~a~spDG~--~~l~v~~~~d~~i~v~D~~tg  333 (355)
T d2bbkh_         269 QRDEWRHKTASRFVVVLDAKTGE----RLAKFE-MGHEIDSINVSQDEK--PLLYALSTGDKTLYIHDAESG  333 (355)
T ss_dssp             ECCTTCTTSCEEEEEEEETTTCC----EEEEEE-EEEEECEEEECCSSS--CEEEEEETTTTEEEEEETTTC
T ss_pred             cCCceeecCCCCeEEEEeCCCCc----EEEEec-CCCCEEEEEEcCCCC--eEEEEEECCCCEEEEEECCCC
Confidence                     22468899987663    222222 345588999999962  135678888999999999764

>d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.23  E-value=5.4e-10  Score=95.71  Aligned_cols=119  Identities=12%  Similarity=-0.009  Sum_probs=76.0

Q ss_pred             ccccceeEEEEccCCCEE---EEeeCCCcEEEEeecCCCceEEEEecCcccCeEEEEeeCCCCCCEEEEEe---------
Q 022111            9 GHEDTVHDVAMDFYGKRL---ATASSDSSIKIIGLSNSASQHLATLKGHRGPVWQVAWAHPKFGSILASCS---------   76 (302)
Q Consensus         9 ~h~~~v~~~~~s~~~~~l---~s~~~d~~v~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~s---------   76 (302)
                      .+.+....++..++++..   +....+++.++|-++....+.+..+.++...  .+.|+++  |+.|+..+         
T Consensus        17 ~~~g~~~~~a~~~~~~~~~v~~~~~~~g~~~~~~~d~~~~~~~~~~~~~~~~--~~a~spD--g~~i~~~~~~~~~~~~g   92 (368)
T d1mdah_          17 ASDGSSCDHGPGAISRRSHITLPAYFAGTTENWVSCAGCGVTLGHSLGAFLS--LAVAGHS--GSDFALASTSFARSAKG   92 (368)
T ss_dssp             CCCCCCBCCCCCCCTTEEEEEECTTTCSSEEEEEEETTTTEEEEEEEECTTC--EEEECTT--SSCEEEEEEEETTTTSS
T ss_pred             ccCCCccccccCCCCcceeEEeeccCCCcceEEEEeCCCCcEEEEEeCCCCC--cceECCC--CCEEEEEcccCcccccc
Confidence            344555555677888743   3345667766665544556666666655544  5788864  77776644         


Q ss_pred             -CCCeEEEEEcCCCCceeEEEEecCCC-------CCeeEEEecCCCCCcEEEEEe-cCCcEEEEEecCC
Q 022111           77 -YDGQVIIWKEGNQNDWTQAHTFNDHK-------SSVNSIAWAPHELGLSLACGS-SDGNISVFTATAD  136 (302)
Q Consensus        77 -~D~~i~iwd~~~~~~~~~~~~~~~h~-------~~i~~l~~~pd~~~~~l~sg~-~d~~v~~~~~~~~  136 (302)
                       .|++|.+||..+..   .+..+..+.       .....++|+||  |++|+.+. .++.+.+||+...
T Consensus        93 ~~d~~v~v~D~~t~~---~~~~i~~p~~~~~~~g~~p~~~a~SpD--Gk~l~va~~~~~~v~~~d~~~~  156 (368)
T d1mdah_          93 KRTDYVEVFDPVTFL---PIADIELPDAPRFSVGPRVHIIGNCAS--SACLLFFLFGSSAAAGLSVPGA  156 (368)
T ss_dssp             SEEEEEEEECTTTCC---EEEEEEETTSCSCCBSCCTTSEEECTT--SSCEEEEECSSSCEEEEEETTT
T ss_pred             ccCCeEEEEECCCCc---EeeeecCCccceecccCCccceEECCC--CCEEEEEeCCCCeEEEEECCCC
Confidence             47889999987764   333333222       22346899999  66666654 6799999998754

>d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl peptidase IV/CD26, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=99.11  E-value=5.3e-09  Score=92.37  Aligned_cols=239  Identities=12%  Similarity=0.075  Sum_probs=141.2

Q ss_pred             EEEEccCCCEEEEeeCCCcEEEEeecCCCceEEE---EecCcccCeEEEEeeCCCCCCEEEEEeC---------CCeEEE
Q 022111           16 DVAMDFYGKRLATASSDSSIKIIGLSNSASQHLA---TLKGHRGPVWQVAWAHPKFGSILASCSY---------DGQVII   83 (302)
Q Consensus        16 ~~~~s~~~~~l~s~~~d~~v~lw~~~~~~~~~~~---~~~~h~~~v~~v~~~~~~~~~~l~s~s~---------D~~i~i   83 (302)
                      .+.|.++++++..  .|+.+.+||..++....+.   ++..|...|.++.|+|+  |++|+.++.         ++.+.+
T Consensus        21 ~~~W~~d~~~~~~--~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~i~~~~~SpD--g~~i~~~~~~~~~~r~s~~~~~~l   96 (470)
T d2bgra1          21 SLRWISDHEYLYK--QENNILVFNAEYGNSSVFLENSTFDEFGHSINDYSISPD--GQFILLEYNYVKQWRHSYTASYDI   96 (470)
T ss_dssp             CCEECSSSEEEEE--SSSCEEEEETTTCCEEEEECTTTTTTSSSCCCEEEECTT--SSEEEEEEEEEECSSSCEEEEEEE
T ss_pred             CCEeCCCCEEEEE--cCCcEEEEECCCCCEEEEEchhhhhhccCccceeEECCC--CCEEEEEECCcceeeeccCceEEE
Confidence            4678899987764  5788999998765433221   34556678999999975  898888754         567889


Q ss_pred             EEcCCCCceeEEEEecCCCCCeeEEEecCCCCCcEEEEEecCCcEEEEEecCCCCeeeeeec---------------ccC
Q 022111           84 WKEGNQNDWTQAHTFNDHKSSVNSIAWAPHELGLSLACGSSDGNISVFTATADGGWDTTRID---------------QAH  148 (302)
Q Consensus        84 wd~~~~~~~~~~~~~~~h~~~i~~l~~~pd~~~~~l~sg~~d~~v~~~~~~~~~~~~~~~~~---------------~~h  148 (302)
                      ||+.++    ....+..+.+.+..+.||||  |..+|.. .++.+.+|+.............               ...
T Consensus        97 ~d~~~~----~~~~l~~~~~~~~~~~~SPD--G~~ia~~-~~~~l~~~~~~~g~~~~~t~~~~~~~~~~g~~d~~~~~~~  169 (470)
T d2bgra1          97 YDLNKR----QLITEERIPNNTQWVTWSPV--GHKLAYV-WNNDIYVKIEPNLPSYRITWTGKEDIIYNGITDWVYEEEV  169 (470)
T ss_dssp             EETTTT----EECCSSCCCTTEEEEEECSS--TTCEEEE-ETTEEEEESSTTSCCEECCSCCBTTTEEESBCCHHHHHHT
T ss_pred             EECCCC----cccccccCCccccccccccC--cceeeEe-ecccceEEECCCCceeeeeeccCCCcccccccceeeeeee
Confidence            999775    34567778999999999999  7788885 5678888887644332221100               001


Q ss_pred             CCCeEEEEeCCCCCCCceeecccCCCceeEEEeeCCCc-EEEEEEecCccccccccccccCCCceeEEEeeCCCCCCccE
Q 022111          149 PVGVTSVSWAPAMAPGALVGLGLLDPVQKLASCGCDNT-VKVWKMYNGIWKMDCFPALQMHSDWVRSVAWAPNLGLPKST  227 (302)
Q Consensus       149 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~D~~-v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~  227 (302)
                      ......+.|+|+              |+.|+....|.. ++.|++.....       .......+..+.+...+      
T Consensus       170 ~~~~~~~~wSPD--------------Gk~ia~~~~d~~~v~~~~~~~~~~-------~~~~~~~~~~~~~~~~g------  222 (470)
T d2bgra1         170 FSAYSALWWSPN--------------GTFLAYAQFNDTEVPLIEYSFYSD-------ESLQYPKTVRVPYPKAG------  222 (470)
T ss_dssp             SSSSBCEEECTT--------------SSEEEEEEEECTTCCEEEEEECCS-------TTCSSCEEEEEECCBTT------
T ss_pred             cCCccccEECCC--------------CCccceeEecCCcCceEEEEeecc-------CCCCCCeeeeecccccc------
Confidence            122455778886              478888766544 77776642210       01111223333332111      


Q ss_pred             EEEEecCCeEEEEEeccCCcceeee--e------eccCCCcEEEEEEccCCCEEEEe---cCC--ceEEeee-cCCceEE
Q 022111          228 IASASQDGTVVIWTCAKEGEQWEGR--V------LKDFKTPVWSVSWSLTGNLLAVA---DAN--NVTLWKE-AVDGEWQ  293 (302)
Q Consensus       228 l~s~s~D~~i~iwd~~~~~~~~~~~--~------~~~~~~~v~~~~~spdg~~la~~---~~d--~i~~w~~-~~~~~~~  293 (302)
                        +...+..+.+|++..........  .      .......+..+.|++++++++..   .++  .+.++.. ...|.+.
T Consensus       223 --~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~r~~~~~~~~~~~~d~~tg~~~  300 (470)
T d2bgra1         223 --AVNPTVKFFVVNTDSLSSVTNATSIQITAPASMLIGDHYLCDVTWATQERISLQWLRRIQNYSVMDICDYDESSGRWN  300 (470)
T ss_dssp             --SCCCEEEEEEEEGGGCCSSSCCCEEEECCCHHHHTSCEEEEEEEEEETTEEEEEEEESSTTEEEEEEEEEETTTTEEE
T ss_pred             --ccCCcceEEEEECCCcceeeeccccccCCccccCCCCceEEEEEEcCCCceeEEEeeccCCceEEEEEEecCCCCcEE
Confidence              12234467888886543211100  0      01112346789999998766654   233  2455554 2244444


Q ss_pred             E
Q 022111          294 Q  294 (302)
Q Consensus       294 ~  294 (302)
                      .
T Consensus       301 ~  301 (470)
T d2bgra1         301 C  301 (470)
T ss_dssp             E
T ss_pred             E
Confidence            3

>d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme
family: 3-carboxy-cis,cis-mucoante lactonizing enzyme
domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme
species: Neurospora crassa [TaxId: 5141]

Probab=99.09  E-value=4.4e-07  Score=77.35  Aligned_cols=256  Identities=9%  Similarity=-0.015  Sum_probs=136.1

Q ss_pred             cceeEEEEccCCCEEEEeeCCCcEEEEeecCCCceEEEEecCcccCeEEEEeeCCCCCC--EEEEEe-CCCeEEEEEcCC
Q 022111           12 DTVHDVAMDFYGKRLATASSDSSIKIIGLSNSASQHLATLKGHRGPVWQVAWAHPKFGS--ILASCS-YDGQVIIWKEGN   88 (302)
Q Consensus        12 ~~v~~~~~s~~~~~l~s~~~d~~v~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~--~l~s~s-~D~~i~iwd~~~   88 (302)
                      ..+.-++|++++++|.++.. +.+..|.+....................+.++++  ++  +++++. ..+++..+.+..
T Consensus        40 ~~~s~la~s~d~~~ly~~~~-~~~~~~~i~~~~~~~~~~~~~~~~~p~~v~~~~~--~~~~~v~~a~~~~~~v~~~~~~~  116 (365)
T d1jofa_          40 EPISWMTFDHERKNIYGAAM-KKWSSFAVKSPTEIVHEASHPIGGHPRANDADTN--TRAIFLLAAKQPPYAVYANPFYK  116 (365)
T ss_dssp             CCCSEEEECTTSSEEEEEEB-TEEEEEEEEETTEEEEEEEEECCSSGGGGCTTSC--CEEEEEEECSSTTCCEEEEEESS
T ss_pred             CCCCEEEEcCCCCEEEEEeC-CcEEEEEEeCCCCeEEEeeecCCCCcEEEEECCC--CCEEEEEEecCCCCEEEEeEccC
Confidence            34556899999999988764 5688887764322111110101112234555443  44  233332 234444333211


Q ss_pred             CC------------c-eeEEEE-ecCCCCCeeEEEecCCCCCcEEEEEec-CCcEEEEEecCCCCeeee-eec-ccCCCC
Q 022111           89 QN------------D-WTQAHT-FNDHKSSVNSIAWAPHELGLSLACGSS-DGNISVFTATADGGWDTT-RID-QAHPVG  151 (302)
Q Consensus        89 ~~------------~-~~~~~~-~~~h~~~i~~l~~~pd~~~~~l~sg~~-d~~v~~~~~~~~~~~~~~-~~~-~~h~~~  151 (302)
                      ..            . ...... ......-+-++.|+||  |+++++++. ...|.+|+....+..... ... ......
T Consensus       117 ~~~~~~~~~~~~~~~~~~~~~~~~~q~~~h~h~v~~sPd--G~~l~v~d~g~d~v~~~~~~~~g~~~~~~~~~~~~~g~g  194 (365)
T d1jofa_         117 FAGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPT--ETYLYSADLTANKLWTHRKLASGEVELVGSVDAPDPGDH  194 (365)
T ss_dssp             SCCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECTT--SSEEEEEETTTTEEEEEEECTTSCEEEEEEEECSSTTCC
T ss_pred             CCCcceeEeeeecceecCcccCcccCCCCcceEEEECCC--CCEEEEeeCCCCEEEEEEccCCCceeeccceeecCCCCc
Confidence            11            0 001111 1112223678999998  666666554 457888887654433221 111 122345


Q ss_pred             eEEEEeCCCCCCCceeecccCCCceeEEEeeCCCcEEEEEEecCcccc-c------cc--------cccccCCCceeEEE
Q 022111          152 VTSVSWAPAMAPGALVGLGLLDPVQKLASCGCDNTVKVWKMYNGIWKM-D------CF--------PALQMHSDWVRSVA  216 (302)
Q Consensus       152 v~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~D~~v~iwd~~~~~~~~-~------~~--------~~~~~h~~~v~~v~  216 (302)
                      ...+.|+|++             ....++...+++|.+|++....... .      ..        .....+......+.
T Consensus       195 Pr~i~f~pdg-------------~~~yv~~e~~~~V~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~  261 (365)
T d1jofa_         195 PRWVAMHPTG-------------NYLYALMEAGNRICEYVIDPATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCA  261 (365)
T ss_dssp             EEEEEECTTS-------------SEEEEEETTTTEEEEEEECTTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEE
T ss_pred             eEEEEECCCC-------------ceEEEeccCCCEEEEEEecCCCceEEEEeeeeccccccccccccccccccCCccceE
Confidence            6788898864             2345667778999999986542110 0      00        01112334466899


Q ss_pred             eeCCCCCCccEEEEEe-cCC-----eEEEEEeccCCcceeeeee---ccCCCcEEEEEEcc-CCCEEEEecCC--ceEEe
Q 022111          217 WAPNLGLPKSTIASAS-QDG-----TVVIWTCAKEGEQWEGRVL---KDFKTPVWSVSWSL-TGNLLAVADAN--NVTLW  284 (302)
Q Consensus       217 ~~p~~~~~~~~l~s~s-~D~-----~i~iwd~~~~~~~~~~~~~---~~~~~~v~~~~~sp-dg~~la~~~~d--~i~~w  284 (302)
                      ++||+    ++|.++. .+.     .|..|++...........+   .......+.++++| +|++|+++..+  .|.+|
T Consensus       262 ~spdG----~~lyvsnr~~~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~G~~p~~i~~~p~~G~~l~va~~~s~~v~v~  337 (365)
T d1jofa_         262 LTFSG----KYMFASSRANKFELQGYIAGFKLRDCGSIEKQLFLSPTPTSGGHSNAVSPCPWSDEWMAITDDQEGWLEIY  337 (365)
T ss_dssp             ECTTS----SEEEEEEEESSTTSCCEEEEEEECTTSCEEEEEEEEECSSCCTTCCCEEECTTCTTEEEEECSSSCEEEEE
T ss_pred             ECCCC----CEEEEEcccCCCccceEEEEEEecCCCceeeEeEeeEEEcCCCCccEEEecCCCCCEEEEEeCCCCeEEEE
Confidence            99996    5554442 222     3777777654321111111   11223467799998 89999888654  69999


Q ss_pred             eecCC
Q 022111          285 KEAVD  289 (302)
Q Consensus       285 ~~~~~  289 (302)
                      +....
T Consensus       338 ~~~~~  342 (365)
T d1jofa_         338 RWKDE  342 (365)
T ss_dssp             EEETT
T ss_pred             EEeCC
Confidence            87543

>d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: All0351-like
domain: Hypothetical protein All0351 homologue
species: Nostoc punctiforme [TaxId: 272131]

Probab=99.02  E-value=4.8e-07  Score=74.94  Aligned_cols=231  Identities=10%  Similarity=-0.036  Sum_probs=136.4

Q ss_pred             ceeEEEEccCCCEEEEeeCCCcEEEEeecCCCceEEEEecCcccCeEEEEeeCCCCCCEEEEEeCCCeEEEEEcCCCCc-
Q 022111           13 TVHDVAMDFYGKRLATASSDSSIKIIGLSNSASQHLATLKGHRGPVWQVAWAHPKFGSILASCSYDGQVIIWKEGNQND-   91 (302)
Q Consensus        13 ~v~~~~~s~~~~~l~s~~~d~~v~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~s~D~~i~iwd~~~~~~-   91 (302)
                      .+..+++++||+++++...+++|+.++.... ..   .+......+.+++|.++  |+++++...++.+..++...... 
T Consensus        29 ~~e~iAv~pdG~l~vt~~~~~~I~~i~p~g~-~~---~~~~~~~~~~gla~~~d--G~l~v~~~~~~~~~~~~~~~~~~~  102 (302)
T d2p4oa1          29 FLENLASAPDGTIFVTNHEVGEIVSITPDGN-QQ---IHATVEGKVSGLAFTSN--GDLVATGWNADSIPVVSLVKSDGT  102 (302)
T ss_dssp             CEEEEEECTTSCEEEEETTTTEEEEECTTCC-EE---EEEECSSEEEEEEECTT--SCEEEEEECTTSCEEEEEECTTSC
T ss_pred             CcCCEEECCCCCEEEEeCCCCEEEEEeCCCC-EE---EEEcCCCCcceEEEcCC--CCeEEEecCCceEEEEEecccccc
Confidence            4678999999999999888998888775432 22   23334556889999764  88888888888888877643321 


Q ss_pred             eeEEEEecCCCCCeeEEEecCCCCCcEEEEEecCCcEEEEEecCCCCeeeeeecc--------cCCCCeEEEEeCCCCCC
Q 022111           92 WTQAHTFNDHKSSVNSIAWAPHELGLSLACGSSDGNISVFTATADGGWDTTRIDQ--------AHPVGVTSVSWAPAMAP  163 (302)
Q Consensus        92 ~~~~~~~~~h~~~i~~l~~~pd~~~~~l~sg~~d~~v~~~~~~~~~~~~~~~~~~--------~h~~~v~~~~~~~~~~~  163 (302)
                      ...+... ......+.+++.++  +.++++-+.++.+..++..... ........        ........+.+.     
T Consensus       103 ~~~~~~~-~~~~~~n~i~~~~~--g~~~v~~~~~~~i~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ngi~~~-----  173 (302)
T d2p4oa1         103 VETLLTL-PDAIFLNGITPLSD--TQYLTADSYRGAIWLIDVVQPS-GSIWLEHPMLARSNSESVFPAANGLKRF-----  173 (302)
T ss_dssp             EEEEEEC-TTCSCEEEEEESSS--SEEEEEETTTTEEEEEETTTTE-EEEEEECGGGSCSSTTCCSCSEEEEEEE-----
T ss_pred             eeecccc-CCccccceeEEccC--CCEEeeccccccceeeeccCCc-ceeEecCCccceeeccCccccccccccc-----
Confidence            1122222 23456788999887  6677777777777666543221 11111000        001112223222     


Q ss_pred             CceeecccCCCceeEEEeeCCCcEEEEEEecCccccccccccccCCCceeEEEeeCCCCCCccEEEEEecCCeEEEEEec
Q 022111          164 GALVGLGLLDPVQKLASCGCDNTVKVWKMYNGIWKMDCFPALQMHSDWVRSVAWAPNLGLPKSTIASASQDGTVVIWTCA  243 (302)
Q Consensus       164 ~~~~~~~~~~~~~~l~s~~~D~~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~l~s~s~D~~i~iwd~~  243 (302)
                                ++.++++.+..+.|..++....... .....+ ........+++.+++    +..++...++.|..++..
T Consensus       174 ----------~~~l~~~~~~~~~i~~~~~~~~~~~-~~~~~~-~~~~~pdgia~d~dG----~l~va~~~~~~V~~i~p~  237 (302)
T d2p4oa1         174 ----------GNFLYVSNTEKMLLLRIPVDSTDKP-GEPEIF-VEQTNIDDFAFDVEG----NLYGATHIYNSVVRIAPD  237 (302)
T ss_dssp             ----------TTEEEEEETTTTEEEEEEBCTTSCB-CCCEEE-EESCCCSSEEEBTTC----CEEEECBTTCCEEEECTT
T ss_pred             ----------CCceeeecCCCCeEEeccccccccc-cccccc-cCCCCCcceEECCCC----CEEEEEcCCCcEEEECCC
Confidence                      2356777778888888887653211 111111 122335679999985    667777788888888664


Q ss_pred             cCCcceeeeee--ccCCCcEEEEEE---ccCCCEEEEecC
Q 022111          244 KEGEQWEGRVL--KDFKTPVWSVSW---SLTGNLLAVADA  278 (302)
Q Consensus       244 ~~~~~~~~~~~--~~~~~~v~~~~~---spdg~~la~~~~  278 (302)
                      ...    ..+.  ...-....+++|   +||++.|.++..
T Consensus       238 G~~----~~~~~~~~~~~~pt~vafg~~~~D~~~Lyvtt~  273 (302)
T d2p4oa1         238 RST----TIIAQAEQGVIGSTAVAFGQTEGDCTAIYVVTN  273 (302)
T ss_dssp             CCE----EEEECGGGTCTTEEEEEECCSTTTTTEEEEEEC
T ss_pred             CCE----EEEEecCCCCCCceEEEEcCCCCCCCEEEEECC
Confidence            321    1111  112234789999   778887755533

>d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: TolB, C-terminal domain
family: TolB, C-terminal domain
domain: TolB, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=98.91  E-value=2.7e-06  Score=68.44  Aligned_cols=218  Identities=13%  Similarity=0.154  Sum_probs=117.8

Q ss_pred             cEEEEeecCCCceEEEEecCcccCeEEEEeeCCCCCCEEEEEeCCC---eEEEEEcCCCCceeEEEEecCCCCCeeEEEe
Q 022111           34 SIKIIGLSNSASQHLATLKGHRGPVWQVAWAHPKFGSILASCSYDG---QVIIWKEGNQNDWTQAHTFNDHKSSVNSIAW  110 (302)
Q Consensus        34 ~v~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~s~D~---~i~iwd~~~~~~~~~~~~~~~h~~~i~~l~~  110 (302)
                      +|.|.|........   +..+...+..-+|||+  |+.||-...+.   .+.+.+....    ....+..+.+......|
T Consensus        20 ~l~i~d~dG~~~~~---l~~~~~~~~sP~wSPD--Gk~IAf~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~   90 (269)
T d2hqsa1          20 ELRVSDYDGYNQFV---VHRSPQPLMSPAWSPD--GSKLAYVTFESGRSALVIQTLANG----AVRQVASFPRHNGAPAF   90 (269)
T ss_dssp             EEEEEETTSCSCEE---EEEESSCEEEEEECTT--SSEEEEEECTTSSCEEEEEETTTC----CEEEEECCSSCEEEEEE
T ss_pred             EEEEEcCCCCCcEE---EecCCCceeeeEECCC--CCEEEEEEeeccCcceeeeecccC----ceeEEeeeeccccccee
Confidence            46666765543333   3344566788999975  89888665433   2444444433    22344557788899999


Q ss_pred             cCCCCCcEEEEEec-CCcEEEEEecCCCCeeeeeecccCCCCeEEEEeCCCCCCCceeecccCCCceeEEEeeCCCcEEE
Q 022111          111 APHELGLSLACGSS-DGNISVFTATADGGWDTTRIDQAHPVGVTSVSWAPAMAPGALVGLGLLDPVQKLASCGCDNTVKV  189 (302)
Q Consensus       111 ~pd~~~~~l~sg~~-d~~v~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~D~~v~i  189 (302)
                      +|+  |..++.... ++...++....... ...... ..........+++..             ...+++...++...+
T Consensus        91 spd--g~~i~~~~~~~~~~~~~~~~~~~~-~~~~~~-~~~~~~~~~~~~~~~-------------~~~~~~~~~~g~~~i  153 (269)
T d2hqsa1          91 SPD--GSKLAFALSKTGSLNLYVMDLASG-QIRQVT-DGRSNNTEPTWFPDS-------------QNLAFTSDQAGRPQV  153 (269)
T ss_dssp             CTT--SSEEEEEECTTSSCEEEEEETTTC-CEEECC-CCSSCEEEEEECTTS-------------SEEEEEECTTSSCEE
T ss_pred             cCC--CCeeeEeeecCCccceeecccccc-cceeee-ecccccccccccccc-------------ccceecccccCCceE
Confidence            998  555555443 33333333221111 111111 122223334444432             345566666666666


Q ss_pred             EEEecCccccccccccccCCCceeEEEeeCCCCCCccEEEEEe-cCCeEEEEEeccCCcceeeeeeccCCCcEEEEEEcc
Q 022111          190 WKMYNGIWKMDCFPALQMHSDWVRSVAWAPNLGLPKSTIASAS-QDGTVVIWTCAKEGEQWEGRVLKDFKTPVWSVSWSL  268 (302)
Q Consensus       190 wd~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~l~s~s-~D~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp  268 (302)
                      |.......   .......+........|+|++    ..++..+ ..+...+|........  ... ...........|||
T Consensus       154 ~~~~~~~~---~~~~~~~~~~~~~~~~~spdg----~~~~~~~~~~~~~~i~~~~~~~~~--~~~-~~~~~~~~~p~~SP  223 (269)
T d2hqsa1         154 YKVNINGG---APQRITWEGSQNQDADVSSDG----KFMVMVSSNGGQQHIAKQDLATGG--VQV-LSSTFLDETPSLAP  223 (269)
T ss_dssp             EEEETTSS---CCEECCCSSSEEEEEEECTTS----SEEEEEEECSSCEEEEEEETTTCC--EEE-CCCSSSCEEEEECT
T ss_pred             eeeecccc---cceeeeccccccccccccccc----ceeEEEeecCCceeeeEeeccccc--ceE-eecCccccceEECC
Confidence            65543211   112233455667778999996    4555554 4556666666543322  122 22234467789999


Q ss_pred             CCCEEEEecCC----ceEEeeec
Q 022111          269 TGNLLAVADAN----NVTLWKEA  287 (302)
Q Consensus       269 dg~~la~~~~d----~i~~w~~~  287 (302)
                      ||+.|+..+..    .|.+++..
T Consensus       224 DG~~i~f~s~~~~~~~l~~~~~d  246 (269)
T d2hqsa1         224 NGTMVIYSSSQGMGSVLNLVSTD  246 (269)
T ss_dssp             TSSEEEEEEEETTEEEEEEEETT
T ss_pred             CCCEEEEEEcCCCCcEEEEEECC
Confidence            99999866432    46666654

>d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Pseudomonas nautica [TaxId: 2743]

Probab=98.87  E-value=1.1e-08  Score=88.95  Aligned_cols=254  Identities=11%  Similarity=0.032  Sum_probs=131.3

Q ss_pred             ccccceeEEEEccCCCEEEEee-CCCcEEEEeecCCCceEEEEecCcccCeEEEEeeCCCCCC--EEEEEeCCCe-----
Q 022111            9 GHEDTVHDVAMDFYGKRLATAS-SDSSIKIIGLSNSASQHLATLKGHRGPVWQVAWAHPKFGS--ILASCSYDGQ-----   80 (302)
Q Consensus         9 ~h~~~v~~~~~s~~~~~l~s~~-~d~~v~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~--~l~s~s~D~~-----   80 (302)
                      .|.-......++|||++|+... .+..|.++|+.......+..+ .+......++|+++  |+  +++..+.+..     
T Consensus        69 ~hhP~~s~t~gtpDGr~lfV~d~~~~rVavIDl~t~k~~~ii~i-P~g~gphgi~~spd--g~t~YV~~~~~~~v~~~~d  145 (441)
T d1qnia2          69 CHHPHISMTDGRYDGKYLFINDKANTRVARIRLDIMKTDKITHI-PNVQAIHGLRLQKV--PKTNYVFCNAEFVIPQPND  145 (441)
T ss_dssp             BCCCEEEEETTEEEEEEEEEEETTTTEEEEEETTTTEEEEEEEC-TTCCCEEEEEECCS--SBCCEEEEEECSCEESSCS
T ss_pred             ccCCCcceecccCCCCEEEEEcCCCCEEEEEECCCCcEeeEEec-CCCCCccceEEecc--CCEEEEEeccCCcccccCc
Confidence            3555565566789999886554 778899999875433333233 34567888999864  55  4444443322     


Q ss_pred             ------------EEEEEcCCCCceeEEEEecCCCCCeeEEEecCCCCCcEEEEEecCC-cEEEEEecCCCCeeeeee---
Q 022111           81 ------------VIIWKEGNQNDWTQAHTFNDHKSSVNSIAWAPHELGLSLACGSSDG-NISVFTATADGGWDTTRI---  144 (302)
Q Consensus        81 ------------i~iwd~~~~~~~~~~~~~~~h~~~i~~l~~~pd~~~~~l~sg~~d~-~v~~~~~~~~~~~~~~~~---  144 (302)
                                  +..+|..+..   ...++.. ......++|+|+  |.++.+.+.+. .+...+..+.........   
T Consensus       146 g~~~~~~~~~~~~~~iD~~t~~---v~~qI~v-~~~p~~v~~spd--Gk~a~vt~~nse~~~~id~~t~~~~d~i~v~n~  219 (441)
T d1qnia2         146 GTDFSLDNSYTMFTAIDAETMD---VAWQVIV-DGNLDNTDADYT--GKYATSTCYNSERAVDLAGTMRNDRDWVVVFNV  219 (441)
T ss_dssp             SSCCCGGGEEEEEEEEETTTCS---EEEEEEE-SSCCCCEEECSS--SSEEEEEESCTTCCSSHHHHTCSSBCEEEEEEH
T ss_pred             ccccccccccceEEeecCccce---eeEEEec-CCCccceEECCC--CCEEEEEecCCCceEEEeccCcceEEEEEeCCc
Confidence                        1235544432   2222221 234678899998  66666665443 221111111100000000   


Q ss_pred             ------------cccCCCCeEEEE---------eCCCCCCCceeecccCCCcee-EEEeeCCCcEEEEEEecCccc----
Q 022111          145 ------------DQAHPVGVTSVS---------WAPAMAPGALVGLGLLDPVQK-LASCGCDNTVKVWKMYNGIWK----  198 (302)
Q Consensus       145 ------------~~~h~~~v~~~~---------~~~~~~~~~~~~~~~~~~~~~-l~s~~~D~~v~iwd~~~~~~~----  198 (302)
                                  .......+..+.         +-|.+  ..-+++..+++|++ ++++..+++|.|||+.+-...    
T Consensus       220 p~~~~~~~dGk~~~v~~~~v~vvd~~~~~~v~~~IPvg--ksPhGv~vSPDGkyl~~~~~~~~tvsv~d~~k~~~~~~~~  297 (441)
T d1qnia2         220 ERIAAAVKAGNFKTIGDSKVPVVDGRGESEFTRYIPVP--KNPHGLNTSPDGKYFIANGKLSPTVSVIAIDKLDDLFEDK  297 (441)
T ss_dssp             HHHHHHHHTTCCBCCTTCCCCEEECSSSCSSEEEECCB--SSCCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHTTTS
T ss_pred             cceEEEecCCCEEEeCCCCcEEEEcccCCceEEEEeCC--CCccCceECCCCCEEEEeCCcCCcEEEEEeehhhhHhhcc
Confidence                        000001111111         11110  11233445566675 566788999999998642110    


Q ss_pred             cccccccccCCC---ceeEEEeeCCCCCCccEEEEEecCCeEEEEEeccCC-----c-cee--eee----eccCCCcEEE
Q 022111          199 MDCFPALQMHSD---WVRSVAWAPNLGLPKSTIASASQDGTVVIWTCAKEG-----E-QWE--GRV----LKDFKTPVWS  263 (302)
Q Consensus       199 ~~~~~~~~~h~~---~v~~v~~~p~~~~~~~~l~s~s~D~~i~iwd~~~~~-----~-~~~--~~~----~~~~~~~v~~  263 (302)
                      .....++.++..   .....+|.+++    +...|...|..|.-|++....     + .+.  ..+    ..+|...+.+
T Consensus       298 ~~~~~~~~~~~~~glgplh~~fd~~g----~~yts~~~ds~v~kw~~~~~~~~~~~~~~~~v~~~~~v~y~~GH~~~~~~  373 (441)
T d1qnia2         298 IELRDTIVAEPELGLGPLHTTFDGRG----NAYTTLFIDSQVCKWNIADAIKHYNGDRVNYIRQKLDVQYQPGHNHASLT  373 (441)
T ss_dssp             SCGGGGEEECCBCCSCEEEEEECSSS----EEEEEETTTTEEEEEEHHHHHHHHTTCCCCCEEEEEECSSCEEEEEETTT
T ss_pred             CCcceEEEeecccccCcccceecCCc----eEEEcccccceEEEeccchhhhhhccCCCceeEeccccccCCCCCccccc
Confidence            000011111111   12345788774    778888999999999985310     0 000  000    1245455667


Q ss_pred             EEEccCCCEEEEec
Q 022111          264 VSWSLTGNLLAVAD  277 (302)
Q Consensus       264 ~~~spdg~~la~~~  277 (302)
                      .+|+|||++|++++
T Consensus       374 ~t~~pdGk~l~s~~  387 (441)
T d1qnia2         374 ESRDADGKWLVVLS  387 (441)
T ss_dssp             TSTTCCCCEEEEEE
T ss_pred             cccCCCCcEEEecC
Confidence            78999999999993

>d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Brain tumor cg10719-pa
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=98.83  E-value=1.1e-05  Score=65.73  Aligned_cols=235  Identities=12%  Similarity=0.110  Sum_probs=136.4

Q ss_pred             ceeEEEEccCCCEEEEeeCCCcEEEEeecCCCceEEEEecC------cccCeEEEEeeCCCCCCEEEE-EeCCCeEEEEE
Q 022111           13 TVHDVAMDFYGKRLATASSDSSIKIIGLSNSASQHLATLKG------HRGPVWQVAWAHPKFGSILAS-CSYDGQVIIWK   85 (302)
Q Consensus        13 ~v~~~~~s~~~~~l~s~~~d~~v~lw~~~~~~~~~~~~~~~------h~~~v~~v~~~~~~~~~~l~s-~s~D~~i~iwd   85 (302)
                      .-..++++++++.+++-.....|++||.+.   ..+..+..      ....-..+.+... .+.+++. .+.++.|..++
T Consensus        24 ~P~gvavd~dg~i~VaD~~n~rI~v~d~~G---~~~~~~~~~~~~~~~~~~p~~~~~~~~-~~~~~~~~~~~~~~i~~~~   99 (279)
T d1q7fa_          24 EPSGVAVNAQNDIIVADTNNHRIQIFDKEG---RFKFQFGECGKRDSQLLYPNRVAVVRN-SGDIIVTERSPTHQIQIYN   99 (279)
T ss_dssp             CEEEEEECTTCCEEEEEGGGTEEEEECTTS---CEEEEECCBSSSTTCBSSEEEEEEETT-TTEEEEEECGGGCEEEEEC
T ss_pred             CccEEEEcCCCCEEEEECCCCEEEEEeCCC---CEEEEecccCCCccccccccccccccc-ccccceeccCCcccccccc
Confidence            357899999999888766778899998653   23333321      1111234555433 2444443 34566777776


Q ss_pred             cCCCCceeEEEEec-CCCCCeeEEEecCCCCCcEEEEEecCCcEEEEEecCCCCeeeeee-cccCCCCeEEEEeCCCCCC
Q 022111           86 EGNQNDWTQAHTFN-DHKSSVNSIAWAPHELGLSLACGSSDGNISVFTATADGGWDTTRI-DQAHPVGVTSVSWAPAMAP  163 (302)
Q Consensus        86 ~~~~~~~~~~~~~~-~h~~~i~~l~~~pd~~~~~l~sg~~d~~v~~~~~~~~~~~~~~~~-~~~h~~~v~~~~~~~~~~~  163 (302)
                      ....    ....+. ........+++.++  +.++++....+.+.+++.  .+... ..+ ...+......++..+    
T Consensus       100 ~~g~----~~~~~~~~~~~~p~~~avd~~--G~i~v~~~~~~~~~~~~~--~g~~~-~~~g~~~~~~~~~~i~~d~----  166 (279)
T d1q7fa_         100 QYGQ----FVRKFGATILQHPRGVTVDNK--GRIIVVECKVMRVIIFDQ--NGNVL-HKFGCSKHLEFPNGVVVND----  166 (279)
T ss_dssp             TTSC----EEEEECTTTCSCEEEEEECTT--SCEEEEETTTTEEEEECT--TSCEE-EEEECTTTCSSEEEEEECS----
T ss_pred             cccc----ceeecCCCcccccceeccccC--CcEEEEeeccceeeEecc--CCcee-ecccccccccccceeeecc----
Confidence            5321    233332 23455678888776  556666555666666653  22221 111 112333445555544    


Q ss_pred             CceeecccCCCceeEEEeeCCCcEEEEEEecCcccccccccc--ccCCCceeEEEeeCCCCCCccEEEEEec-CCeEEEE
Q 022111          164 GALVGLGLLDPVQKLASCGCDNTVKVWKMYNGIWKMDCFPAL--QMHSDWVRSVAWAPNLGLPKSTIASASQ-DGTVVIW  240 (302)
Q Consensus       164 ~~~~~~~~~~~~~~l~s~~~D~~v~iwd~~~~~~~~~~~~~~--~~h~~~v~~v~~~p~~~~~~~~l~s~s~-D~~i~iw  240 (302)
                                ++..+++....+.|++||.....     +..+  .+.......|++.|++    +.+++-+. ++.|.+|
T Consensus       167 ----------~g~i~v~d~~~~~V~~~d~~G~~-----~~~~g~~g~~~~P~giavD~~G----~i~Vad~~~~~~v~~f  227 (279)
T d1q7fa_         167 ----------KQEIFISDNRAHCVKVFNYEGQY-----LRQIGGEGITNYPIGVGINSNG----EILIADNHNNFNLTIF  227 (279)
T ss_dssp             ----------SSEEEEEEGGGTEEEEEETTCCE-----EEEESCTTTSCSEEEEEECTTC----CEEEEECSSSCEEEEE
T ss_pred             ----------ceeEEeeeccccceeeeecCCce-----eeeecccccccCCcccccccCC----eEEEEECCCCcEEEEE
Confidence                      34677888888899999865421     1122  2345567889999985    66666544 5579999


Q ss_pred             EeccCCcceeeeeecc-CCCcEEEEEEccCCCEEEEecCC-ceEEeeec
Q 022111          241 TCAKEGEQWEGRVLKD-FKTPVWSVSWSLTGNLLAVADAN-NVTLWKEA  287 (302)
Q Consensus       241 d~~~~~~~~~~~~~~~-~~~~v~~~~~spdg~~la~~~~d-~i~~w~~~  287 (302)
                      +...   .....+... .....+.|++.|||+++++ +.+ .|++|+..
T Consensus       228 ~~~G---~~~~~~~~~~~~~~p~~vav~~dG~l~V~-~~n~~v~~fr~~  272 (279)
T d1q7fa_         228 TQDG---QLISALESKVKHAQCFDVALMDDGSVVLA-SKDYRLYIYRYV  272 (279)
T ss_dssp             CTTS---CEEEEEEESSCCSCEEEEEEETTTEEEEE-ETTTEEEEEECS
T ss_pred             CCCC---CEEEEEeCCCCCCCEeEEEEeCCCcEEEE-eCCCeEEEEEee
Confidence            7532   121122212 1235789999999976654 456 79999853

>d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: TolB, C-terminal domain
family: TolB, C-terminal domain
domain: TolB, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=98.78  E-value=1e-05  Score=64.91  Aligned_cols=223  Identities=15%  Similarity=0.103  Sum_probs=118.4

Q ss_pred             cccceeEEEEccCCCEEEEeeC-CCc--EEEEeecCCCceEEEEecCcccCeEEEEeeCCCCCCEEEEEeC-CCeEEEEE
Q 022111           10 HEDTVHDVAMDFYGKRLATASS-DSS--IKIIGLSNSASQHLATLKGHRGPVWQVAWAHPKFGSILASCSY-DGQVIIWK   85 (302)
Q Consensus        10 h~~~v~~~~~s~~~~~l~s~~~-d~~--v~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~s~-D~~i~iwd   85 (302)
                      +...+.+-+|||||+.||=... .+.  +.+.+.....   ...+..+.+......|+++  |+.++..+. ++...++.
T Consensus        37 ~~~~~~sP~wSPDGk~IAf~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~spd--g~~i~~~~~~~~~~~~~~  111 (269)
T d2hqsa1          37 SPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGA---VRQVASFPRHNGAPAFSPD--GSKLAFALSKTGSLNLYV  111 (269)
T ss_dssp             ESSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCC---EEEEECCSSCEEEEEECTT--SSEEEEEECTTSSCEEEE
T ss_pred             CCCceeeeEECCCCCEEEEEEeeccCcceeeeecccCc---eeEEeeeecccccceecCC--CCeeeEeeecCCccceee
Confidence            4456678899999999985443 333  4444443322   2344456777888899864  777665543 33333333


Q ss_pred             cCCCCceeEEEEecCCCCCeeEEEecCCCCCcEEEEEecCCcEEEEEecCCCCeeeeeecccCCCCeEEEEeCCCCCCCc
Q 022111           86 EGNQNDWTQAHTFNDHKSSVNSIAWAPHELGLSLACGSSDGNISVFTATADGGWDTTRIDQAHPVGVTSVSWAPAMAPGA  165 (302)
Q Consensus        86 ~~~~~~~~~~~~~~~h~~~i~~l~~~pd~~~~~l~sg~~d~~v~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~  165 (302)
                      ......  ................++++. ...+.+...++...+|......... ..+. .+........|+|++    
T Consensus       112 ~~~~~~--~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~g~~~i~~~~~~~~~~-~~~~-~~~~~~~~~~~spdg----  182 (269)
T d2hqsa1         112 MDLASG--QIRQVTDGRSNNTEPTWFPDS-QNLAFTSDQAGRPQVYKVNINGGAP-QRIT-WEGSQNQDADVSSDG----  182 (269)
T ss_dssp             EETTTC--CEEECCCCSSCEEEEEECTTS-SEEEEEECTTSSCEEEEEETTSSCC-EECC-CSSSEEEEEEECTTS----
T ss_pred             cccccc--cceeeeecccccccccccccc-ccceecccccCCceEeeeecccccc-eeee-ccccccccccccccc----
Confidence            222111  112222234444455566663 3345555566665665544222111 1111 233445667888864    


Q ss_pred             eeecccCCCceeEEE-eeCCCcEEEEEEecCccccccccccccCCCceeEEEeeCCCCCCccEEEEEec-C--CeEEEEE
Q 022111          166 LVGLGLLDPVQKLAS-CGCDNTVKVWKMYNGIWKMDCFPALQMHSDWVRSVAWAPNLGLPKSTIASASQ-D--GTVVIWT  241 (302)
Q Consensus       166 ~~~~~~~~~~~~l~s-~~~D~~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~l~s~s~-D--~~i~iwd  241 (302)
                                +.++. ....+...+|........    .....+........|+|||    +.|+-.+. .  ..|.+++
T Consensus       183 ----------~~~~~~~~~~~~~~i~~~~~~~~~----~~~~~~~~~~~~p~~SPDG----~~i~f~s~~~~~~~l~~~~  244 (269)
T d2hqsa1         183 ----------KFMVMVSSNGGQQHIAKQDLATGG----VQVLSSTFLDETPSLAPNG----TMVIYSSSQGMGSVLNLVS  244 (269)
T ss_dssp             ----------SEEEEEEECSSCEEEEEEETTTCC----EEECCCSSSCEEEEECTTS----SEEEEEEEETTEEEEEEEE
T ss_pred             ----------ceeEEEeecCCceeeeEeeccccc----ceEeecCccccceEECCCC----CEEEEEEcCCCCcEEEEEE
Confidence                      44444 444556666665533211    1222345556788999996    55554443 2  3577777


Q ss_pred             eccCCcceeeeeeccCCCcEEEEEEcc
Q 022111          242 CAKEGEQWEGRVLKDFKTPVWSVSWSL  268 (302)
Q Consensus       242 ~~~~~~~~~~~~~~~~~~~v~~~~~sp  268 (302)
                      +....    ...+......+...+|||
T Consensus       245 ~dg~~----~~~lt~~~g~~~~p~WSP  267 (269)
T d2hqsa1         245 TDGRF----KARLPATDGQVKFPAWSP  267 (269)
T ss_dssp             TTSCC----EEECCCSSSEEEEEEECC
T ss_pred             CCCCC----EEEEeCCCCcEEeEEeCC
Confidence            76432    122334455678889998

>d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=98.77  E-value=7.7e-08  Score=81.88  Aligned_cols=198  Identities=9%  Similarity=-0.058  Sum_probs=109.8

Q ss_pred             EEEEccCCCEEEEee-CCCcEEEEeecCCCceEEEEecCcccCeEEEEeeCCCCCCEEEEEeCCCeEEEEEcCCCCceeE
Q 022111           16 DVAMDFYGKRLATAS-SDSSIKIIGLSNSASQHLATLKGHRGPVWQVAWAHPKFGSILASCSYDGQVIIWKEGNQNDWTQ   94 (302)
Q Consensus        16 ~~~~s~~~~~l~s~~-~d~~v~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~s~D~~i~iwd~~~~~~~~~   94 (302)
                      .++|+|||++|+.+. .++.+.+||+...  +....+..+....  +  .+. ....++..+.|+++.+++.........
T Consensus       128 ~~a~SpDGk~l~va~~~~~~v~~~d~~~~--~~~~~~~~~~~~~--~--~~~-~~~~~v~~~~Dg~~~~~~~~~~~~~~~  200 (368)
T d1mdah_         128 IIGNCASSACLLFFLFGSSAAAGLSVPGA--SDDQLTKSASCFH--I--HPG-AAATHYLGSCPASLAASDLAAAPAAAG  200 (368)
T ss_dssp             SEEECTTSSCEEEEECSSSCEEEEEETTT--EEEEEEECSSCCC--C--EEE-ETTEEECCCCTTSCEEEECCSSCCCCE
T ss_pred             ceEECCCCCEEEEEeCCCCeEEEEECCCC--cEeEEeeccCcce--E--ccC-CCceEEEEcCCCCEEEEEecCCceeee
Confidence            578999999998776 5799999998763  4444444433221  1  111 135667778899988888754432111


Q ss_pred             E---EEecCCCCCeeEEEecCCCCCcEEEEEecCCcEEEEEecCCCCeeeeeecccCC----------CCeEEEEeCCCC
Q 022111           95 A---HTFNDHKSSVNSIAWAPHELGLSLACGSSDGNISVFTATADGGWDTTRIDQAHP----------VGVTSVSWAPAM  161 (302)
Q Consensus        95 ~---~~~~~h~~~i~~l~~~pd~~~~~l~sg~~d~~v~~~~~~~~~~~~~~~~~~~h~----------~~v~~~~~~~~~  161 (302)
                      .   ..+..+...+..+.+.++  +..+.+  ..+.+.+++............. .+.          .....++++|+.
T Consensus       201 ~~~~~~~~~~~~~~~~~~~~~~--g~~~~~--~~~~v~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~g~~~~a~~~~~  275 (368)
T d1mdah_         201 IVGAQCTGAQNCSSQAAQANYP--GMLVWA--VASSILQGDIPAAGATMKAAID-GNESGRKADNFRSAGFQMVAKLKNT  275 (368)
T ss_dssp             ECCCCSCTTSCBCSCCEEETTT--TEEEEC--BSSCCEEEECCSSCCEEECCCC-SSCTHHHHTTEEECSSSCEEEETTT
T ss_pred             eeecccccccccceeecccccC--cEEEEe--cCCCEEEEeecCCceEEEeecc-cccceeeeeeecCCCceeEEEcCCC
Confidence            1   122334455566667665  444433  3455666665433221111100 110          011123333332


Q ss_pred             CCCceeecccCCCceeEEEeeC--------CCcEEEEEEecCccccccccccccCCCceeEEEeeCCCCCCccEEEEEec
Q 022111          162 APGALVGLGLLDPVQKLASCGC--------DNTVKVWKMYNGIWKMDCFPALQMHSDWVRSVAWAPNLGLPKSTIASASQ  233 (302)
Q Consensus       162 ~~~~~~~~~~~~~~~~l~s~~~--------D~~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~l~s~s~  233 (302)
                                   +..++....        ...|.+||..++.    .+..+. +...+.+++|+||++.  ..+++++.
T Consensus       276 -------------~~~~v~~~~~~~~~~~~~~~v~v~D~~t~~----~~~~~~-~~~~~~~~a~spDG~~--~ly~s~~~  335 (368)
T d1mdah_         276 -------------DGIMILTVEHSRSCLAAAENTSSVTASVGQ----TSGPIS-NGHDSDAIIAAQDGAS--DNYANSAG  335 (368)
T ss_dssp             -------------TEEEEEEEECSSCTTSCEEEEEEEESSSCC----EEECCE-EEEEECEEEECCSSSC--EEEEEETT
T ss_pred             -------------CEEEEEecCCCceeecCCceEEEEECCCCc----EeEEec-CCCceeEEEECCCCCE--EEEEEeCC
Confidence                         122222211        2358899988763    223332 3456889999999621  24678888


Q ss_pred             CCeEEEEEeccC
Q 022111          234 DGTVVIWTCAKE  245 (302)
Q Consensus       234 D~~i~iwd~~~~  245 (302)
                      |+.|++||..+.
T Consensus       336 ~~~v~v~D~~tg  347 (368)
T d1mdah_         336 TEVLDIYDAASD  347 (368)
T ss_dssp             TTEEEEEESSSC
T ss_pred             CCeEEEEECCCC
Confidence            999999998764

>d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: All0351-like
domain: Hypothetical protein All0351 homologue
species: Nostoc punctiforme [TaxId: 272131]

Probab=98.70  E-value=1.1e-05  Score=66.32  Aligned_cols=201  Identities=12%  Similarity=0.079  Sum_probs=119.5

Q ss_pred             CeEEEEeeCCCCCCEEEEEeCCCeEEEEEcCCCCceeEEEEecCCCCCeeEEEecCCCCCcEEEEEecCCcEEEEEecCC
Q 022111           57 PVWQVAWAHPKFGSILASCSYDGQVIIWKEGNQNDWTQAHTFNDHKSSVNSIAWAPHELGLSLACGSSDGNISVFTATAD  136 (302)
Q Consensus        57 ~v~~v~~~~~~~~~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~h~~~i~~l~~~pd~~~~~l~sg~~d~~v~~~~~~~~  136 (302)
                      .+..+++.++  |+++++...+++|..|+....     ...+......+.+++|.||  |.++++...++.+..++....
T Consensus        29 ~~e~iAv~pd--G~l~vt~~~~~~I~~i~p~g~-----~~~~~~~~~~~~gla~~~d--G~l~v~~~~~~~~~~~~~~~~   99 (302)
T d2p4oa1          29 FLENLASAPD--GTIFVTNHEVGEIVSITPDGN-----QQIHATVEGKVSGLAFTSN--GDLVATGWNADSIPVVSLVKS   99 (302)
T ss_dssp             CEEEEEECTT--SCEEEEETTTTEEEEECTTCC-----EEEEEECSSEEEEEEECTT--SCEEEEEECTTSCEEEEEECT
T ss_pred             CcCCEEECCC--CCEEEEeCCCCEEEEEeCCCC-----EEEEEcCCCCcceEEEcCC--CCeEEEecCCceEEEEEeccc
Confidence            4778898764  899999999999888875432     2223335577899999998  668888888888887776532


Q ss_pred             CCeeeeeecccCCCCeEEEEeCCCCCCCceeecccCCCceeEEEeeCCCcEEEEEEecCcccccc------ccccccCCC
Q 022111          137 GGWDTTRIDQAHPVGVTSVSWAPAMAPGALVGLGLLDPVQKLASCGCDNTVKVWKMYNGIWKMDC------FPALQMHSD  210 (302)
Q Consensus       137 ~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~D~~v~iwd~~~~~~~~~~------~~~~~~h~~  210 (302)
                      ..................+.+.++              +.++++-+.++.+..+|...+......      .........
T Consensus       100 ~~~~~~~~~~~~~~~~n~i~~~~~--------------g~~~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  165 (302)
T d2p4oa1         100 DGTVETLLTLPDAIFLNGITPLSD--------------TQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFP  165 (302)
T ss_dssp             TSCEEEEEECTTCSCEEEEEESSS--------------SEEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSC
T ss_pred             ccceeeccccCCccccceeEEccC--------------CCEEeeccccccceeeeccCCcceeEecCCccceeeccCccc
Confidence            211111111122233455665553              467777777777777776544211100      001112223


Q ss_pred             ceeEEEeeCCCCCCccEEEEEecCCeEEEEEeccCCcceeeeeeccCCCcEEEEEEccCCCEEEEecCC-ceEEeee
Q 022111          211 WVRSVAWAPNLGLPKSTIASASQDGTVVIWTCAKEGEQWEGRVLKDFKTPVWSVSWSLTGNLLAVADAN-NVTLWKE  286 (302)
Q Consensus       211 ~v~~v~~~p~~~~~~~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~la~~~~d-~i~~w~~  286 (302)
                      ..+.+++..+     ..+++.+..+.|..++.............. ......+++|.++|+++++...+ .|..++.
T Consensus       166 ~~ngi~~~~~-----~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~-~~~~pdgia~d~dG~l~va~~~~~~V~~i~p  236 (302)
T d2p4oa1         166 AANGLKRFGN-----FLYVSNTEKMLLLRIPVDSTDKPGEPEIFV-EQTNIDDFAFDVEGNLYGATHIYNSVVRIAP  236 (302)
T ss_dssp             SEEEEEEETT-----EEEEEETTTTEEEEEEBCTTSCBCCCEEEE-ESCCCSSEEEBTTCCEEEECBTTCCEEEECT
T ss_pred             ccccccccCC-----ceeeecCCCCeEEecccccccccccccccc-CCCCCcceEECCCCCEEEEEcCCCcEEEECC
Confidence            4566776543     567777788888888776432211111111 12234579999999987776555 6777753

>d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Serine/threonine-protein kinase PknD
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.67  E-value=1.4e-05  Score=64.24  Aligned_cols=236  Identities=10%  Similarity=0.005  Sum_probs=128.4

Q ss_pred             cceeEEEEccCCCEEEE-eeCCCcEEEEeecCCCceEEEEecCcccCeEEEEeeCCCCCCEEEEEeCCCeEEEEEcCCCC
Q 022111           12 DTVHDVAMDFYGKRLAT-ASSDSSIKIIGLSNSASQHLATLKGHRGPVWQVAWAHPKFGSILASCSYDGQVIIWKEGNQN   90 (302)
Q Consensus        12 ~~v~~~~~s~~~~~l~s-~~~d~~v~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~s~D~~i~iwd~~~~~   90 (302)
                      -.-++++++++|+..++ .+..+.+..++.... ........+.. .-..+++.+  +++++++....+.+++++..+. 
T Consensus        14 ~~P~~vavd~dG~i~v~~~~~~~~i~~~~~~~~-~~~~~~~~~~~-~p~gvav~~--~g~i~v~d~~~~~i~~~~~~~~-   88 (260)
T d1rwia_          14 LSPSGVAVDSAGNVYVTSEGMYGRVVKLATGST-GTTVLPFNGLY-QPQGLAVDG--AGTVYVTDFNNRVVTLAAGSNN-   88 (260)
T ss_dssp             CCEEEEEECTTCCEEEEECSSSCEEEEEC-----CEEECCCCSCC-SCCCEEECT--TCCEEEEETTTEEEEECTTCSC-
T ss_pred             CCCCEEEEcCCCCEEEEEcCCCCEEEEEcCCCc-eEEEeccCCcc-CceEEEEcC--CCCEEEeeeeeceeeeeeeccc-
Confidence            44578999999986554 445576776655432 22222223222 235678865  3788887777777777654332 


Q ss_pred             ceeEEEEecCCCCCeeEEEecCCCCCcEEEEEecCCcEEEEEecCCCCeeeeeecccCCCCeEEEEeCCCCCCCceeecc
Q 022111           91 DWTQAHTFNDHKSSVNSIAWAPHELGLSLACGSSDGNISVFTATADGGWDTTRIDQAHPVGVTSVSWAPAMAPGALVGLG  170 (302)
Q Consensus        91 ~~~~~~~~~~h~~~i~~l~~~pd~~~~~l~sg~~d~~v~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~  170 (302)
                        ....... ......++++.++  +.++++-.....+..++....  .. .............++..|+          
T Consensus        89 --~~~~~~~-~~~~p~~iavd~~--g~i~v~d~~~~~~~~~~~~~~--~~-~~~~~~~~~~p~~i~~~~~----------  150 (260)
T d1rwia_          89 --QTVLPFD-GLNYPEGLAVDTQ--GAVYVADRGNNRVVKLAAGSK--TQ-TVLPFTGLNDPDGVAVDNS----------  150 (260)
T ss_dssp             --CEECCCC-SCCSEEEEEECTT--CCEEEEEGGGTEEEEECTTCS--SC-EECCCCSCCSCCEEEECTT----------
T ss_pred             --eeeeeee-eeeeccccccccc--ceeEeeccccccccccccccc--ee-eeeeecccCCcceeeecCC----------
Confidence              1222222 2345688999876  555555545555555543221  11 1111011122345555543          


Q ss_pred             cCCCceeEEEeeCCCcEEEEEEecCccccccccccccCCCceeEEEeeCCCCCCccEEEEEecCCeEEEEEeccCCccee
Q 022111          171 LLDPVQKLASCGCDNTVKVWKMYNGIWKMDCFPALQMHSDWVRSVAWAPNLGLPKSTIASASQDGTVVIWTCAKEGEQWE  250 (302)
Q Consensus       171 ~~~~~~~l~s~~~D~~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~l~s~s~D~~i~iwd~~~~~~~~~  250 (302)
                          +..+++...++.|..+|........    .....-.....|++.+++    +.+++....+.|..++......   
T Consensus       151 ----g~~~v~~~~~~~i~~~d~~~~~~~~----~~~~~~~~p~gi~~d~~g----~l~vsd~~~~~i~~~~~~~~~~---  215 (260)
T d1rwia_         151 ----GNVYVTDTDNNRVVKLEAESNNQVV----LPFTDITAPWGIAVDEAG----TVYVTEHNTNQVVKLLAGSTTS---  215 (260)
T ss_dssp             ----CCEEEEEGGGTEEEEECTTTCCEEE----CCCSSCCSEEEEEECTTC----CEEEEETTTTEEEEECTTCSCC---
T ss_pred             ----CCEeeeccccccccccccccceeee----eeccccCCCccceeeeee----eeeeeecCCCEEEEEeCCCCeE---
Confidence                4567777777788888865432111    111233445789998885    6777777788887776543211   


Q ss_pred             eeeeccCCCcEEEEEEccCCCEEEEecCC-ceEEee
Q 022111          251 GRVLKDFKTPVWSVSWSLTGNLLAVADAN-NVTLWK  285 (302)
Q Consensus       251 ~~~~~~~~~~v~~~~~spdg~~la~~~~d-~i~~w~  285 (302)
                      .......-....+|+++++|+++++-..+ .|+..+
T Consensus       216 ~~~~~~~~~~P~~i~~d~~g~l~vad~~~~rI~~i~  251 (260)
T d1rwia_         216 TVLPFTGLNTPLAVAVDSDRTVYVADRGNDRVVKLT  251 (260)
T ss_dssp             EECCCCSCCCEEEEEECTTCCEEEEEGGGTEEEEEC
T ss_pred             EEEccCCCCCeEEEEEeCCCCEEEEECCCCEEEEEe
Confidence            11111112356799999999876654333 455444

>d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme
family: 3-carboxy-cis,cis-mucoante lactonizing enzyme
domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme
species: Neurospora crassa [TaxId: 5141]

Probab=98.65  E-value=5.2e-05  Score=64.09  Aligned_cols=247  Identities=8%  Similarity=0.036  Sum_probs=128.0

Q ss_pred             EEEEeeC--CCcEEEEeecCCCce--EEEEe-cCcccCeEEEEeeCCCCCCEEEEEeCCCeEEEEEcCCCCceeEEEEec
Q 022111           25 RLATASS--DSSIKIIGLSNSASQ--HLATL-KGHRGPVWQVAWAHPKFGSILASCSYDGQVIIWKEGNQNDWTQAHTFN   99 (302)
Q Consensus        25 ~l~s~~~--d~~v~lw~~~~~~~~--~~~~~-~~h~~~v~~v~~~~~~~~~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~   99 (302)
                      .|+.|+.  .+.|+++.++.+..+  .+... ......+..|+|+++  +++|.++.. +.+..|.+.............
T Consensus         4 ~l~vGtyt~~~~i~~~~fd~~~~~l~~~~~~~~~~~~~~s~la~s~d--~~~ly~~~~-~~~~~~~i~~~~~~~~~~~~~   80 (365)
T d1jofa_           4 HLMIGTWTPPGAIFTVQFDDEKLTCKLIKRTEIPQDEPISWMTFDHE--RKNIYGAAM-KKWSSFAVKSPTEIVHEASHP   80 (365)
T ss_dssp             EEEEEESSSSCEEEEEEEETTTTEEEEEEEEECCTTCCCSEEEECTT--SSEEEEEEB-TEEEEEEEEETTEEEEEEEEE
T ss_pred             EEEEEeecCCCCEEEEEEcCCCCeEEEeeeeeccCCCCCCEEEEcCC--CCEEEEEeC-CcEEEEEEeCCCCeEEEeeec
Confidence            4666654  557877777655432  22221 223444667999764  677776654 567788775432222111111


Q ss_pred             CCCCCeeEEEecCCCCCcEEEEEe-cCCcEEEEEecCCCCee-eeeec-------------ccCCCCeEEEEeCCCCCCC
Q 022111          100 DHKSSVNSIAWAPHELGLSLACGS-SDGNISVFTATADGGWD-TTRID-------------QAHPVGVTSVSWAPAMAPG  164 (302)
Q Consensus       100 ~h~~~i~~l~~~pd~~~~~l~sg~-~d~~v~~~~~~~~~~~~-~~~~~-------------~~h~~~v~~~~~~~~~~~~  164 (302)
                       .......+.++|+....++++.. ..+++..+.....+... ...+.             ......+.++.|+|+    
T Consensus        81 -~~~~p~~v~~~~~~~~~~v~~a~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~h~h~v~~sPd----  155 (365)
T d1jofa_          81 -IGGHPRANDADTNTRAIFLLAAKQPPYAVYANPFYKFAGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPT----  155 (365)
T ss_dssp             -CCSSGGGGCTTSCCEEEEEEECSSTTCCEEEEEESSSCCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECTT----
T ss_pred             -CCCCcEEEEECCCCCEEEEEEecCCCCEEEEeEccCCCCcceeEeeeecceecCcccCcccCCCCcceEEEECCC----
Confidence             22334566777773222344432 23455554433221110 00000             001112455666665    


Q ss_pred             ceeecccCCCceeEEEee-CCCcEEEEEEecCcccccccccc--ccCCCceeEEEeeCCCCCCccEEEEEecCCeEEEEE
Q 022111          165 ALVGLGLLDPVQKLASCG-CDNTVKVWKMYNGIWKMDCFPAL--QMHSDWVRSVAWAPNLGLPKSTIASASQDGTVVIWT  241 (302)
Q Consensus       165 ~~~~~~~~~~~~~l~s~~-~D~~v~iwd~~~~~~~~~~~~~~--~~h~~~v~~v~~~p~~~~~~~~l~s~s~D~~i~iwd  241 (302)
                                +++++++. ....|.+|+..... .+......  .......+.++|+|++   ....++...+++|.+|+
T Consensus       156 ----------G~~l~v~d~g~d~v~~~~~~~~g-~~~~~~~~~~~~~g~gPr~i~f~pdg---~~~yv~~e~~~~V~v~~  221 (365)
T d1jofa_         156 ----------ETYLYSADLTANKLWTHRKLASG-EVELVGSVDAPDPGDHPRWVAMHPTG---NYLYALMEAGNRICEYV  221 (365)
T ss_dssp             ----------SSEEEEEETTTTEEEEEEECTTS-CEEEEEEEECSSTTCCEEEEEECTTS---SEEEEEETTTTEEEEEE
T ss_pred             ----------CCEEEEeeCCCCEEEEEEccCCC-ceeeccceeecCCCCceEEEEECCCC---ceEEEeccCCCEEEEEE
Confidence                      46655554 35578888865431 11111111  1234567899999996   23456777789999999


Q ss_pred             eccCCcceee---ee--e---------c--cCCCcEEEEEEccCCCEEEEecC--Cc-----eEEeeecCCceEE
Q 022111          242 CAKEGEQWEG---RV--L---------K--DFKTPVWSVSWSLTGNLLAVADA--NN-----VTLWKEAVDGEWQ  293 (302)
Q Consensus       242 ~~~~~~~~~~---~~--~---------~--~~~~~v~~~~~spdg~~la~~~~--d~-----i~~w~~~~~~~~~  293 (302)
                      +.........   ..  .         .  ........+.++|||++|.++.+  +.     |..|+....+...
T Consensus       222 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~lyvsnr~~~~~~~~~i~~~~~~~~g~~~  296 (365)
T d1jofa_         222 IDPATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFASSRANKFELQGYIAGFKLRDCGSIE  296 (365)
T ss_dssp             ECTTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEESSTTSCCEEEEEEECTTSCEE
T ss_pred             ecCCCceEEEEeeeeccccccccccccccccccCCccceEECCCCCEEEEEcccCCCccceEEEEEEecCCCcee
Confidence            8654321100   00  0         0  01123557899999999988743  22     7777776665543

>d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Pseudomonas nautica [TaxId: 2743]

Probab=98.63  E-value=1.3e-05  Score=69.37  Aligned_cols=241  Identities=10%  Similarity=0.050  Sum_probs=125.8

Q ss_pred             EEEEeeCCCcEEEEeecCCCceEEEEec------------------------------CcccCeEEEEeeCCCCCCEEE-
Q 022111           25 RLATASSDSSIKIIGLSNSASQHLATLK------------------------------GHRGPVWQVAWAHPKFGSILA-   73 (302)
Q Consensus        25 ~l~s~~~d~~v~lw~~~~~~~~~~~~~~------------------------------~h~~~v~~v~~~~~~~~~~l~-   73 (302)
                      .++|++.+|+|++|++.+.  +.+..+.                              .|-.......+.+  +|++|+ 
T Consensus        13 ~f~Sgg~sG~V~V~dlpS~--r~l~~IpVfspd~~~g~g~~~es~~vl~~~~~~~~gd~hhP~~s~t~gtp--DGr~lfV   88 (441)
T d1qnia2          13 GFWSGGHQGEVRVLGVPSM--RELMRIPVFNVDSATGWGITNESKEILGGDQQYLNGDCHHPHISMTDGRY--DGKYLFI   88 (441)
T ss_dssp             EEEECBTTCCEEEEEETTT--EEEEEECSSSBCTTTCTTTSHHHHHHHCSSSCCSCCCBCCCEEEEETTEE--EEEEEEE
T ss_pred             EEEeCCCCCcEEEEeCCCC--cEEEEEEeEcCCCCEEEEECCccceEEecccccccCcccCCCcceecccC--CCCEEEE
Confidence            3678999999999998542  2222221                              1222222232333  378774 


Q ss_pred             EEeCCCeEEEEEcCCCCceeEEEEec-CCCCCeeEEEecCCCCCcEEEEEecCCcEE------------------EEEec
Q 022111           74 SCSYDGQVIIWKEGNQNDWTQAHTFN-DHKSSVNSIAWAPHELGLSLACGSSDGNIS------------------VFTAT  134 (302)
Q Consensus        74 s~s~D~~i~iwd~~~~~~~~~~~~~~-~h~~~i~~l~~~pd~~~~~l~sg~~d~~v~------------------~~~~~  134 (302)
                      +...+.+|.++|+.+..   ..+.+. .+...+..++|+|+.+-.+++..+.+ .+.                  .+|..
T Consensus        89 ~d~~~~rVavIDl~t~k---~~~ii~iP~g~gphgi~~spdg~t~YV~~~~~~-~v~~~~dg~~~~~~~~~~~~~~iD~~  164 (441)
T d1qnia2          89 NDKANTRVARIRLDIMK---TDKITHIPNVQAIHGLRLQKVPKTNYVFCNAEF-VIPQPNDGTDFSLDNSYTMFTAIDAE  164 (441)
T ss_dssp             EETTTTEEEEEETTTTE---EEEEEECTTCCCEEEEEECCSSBCCEEEEEECS-CEESSCSSSCCCGGGEEEEEEEEETT
T ss_pred             EcCCCCEEEEEECCCCc---EeeEEecCCCCCccceEEeccCCEEEEEeccCC-cccccCcccccccccccceEEeecCc
Confidence            44578899999998753   333332 24567889999998543355554433 222                  23322


Q ss_pred             CCCCeeeeeecccCCCCeEEEEeCCCCCCCceeec-----------------------------ccCCCceeEEEeeCCC
Q 022111          135 ADGGWDTTRIDQAHPVGVTSVSWAPAMAPGALVGL-----------------------------GLLDPVQKLASCGCDN  185 (302)
Q Consensus       135 ~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~-----------------------------~~~~~~~~l~s~~~D~  185 (302)
                      +..  ...++.  .......+.++|++.-. .+..                             ...++++++.. +.++
T Consensus       165 t~~--v~~qI~--v~~~p~~v~~spdGk~a-~vt~~nse~~~~id~~t~~~~d~i~v~n~p~~~~~~~dGk~~~v-~~~~  238 (441)
T d1qnia2         165 TMD--VAWQVI--VDGNLDNTDADYTGKYA-TSTCYNSERAVDLAGTMRNDRDWVVVFNVERIAAAVKAGNFKTI-GDSK  238 (441)
T ss_dssp             TCS--EEEEEE--ESSCCCCEEECSSSSEE-EEEESCTTCCSSHHHHTCSSBCEEEEEEHHHHHHHHHTTCCBCC-TTCC
T ss_pred             cce--eeEEEe--cCCCccceEECCCCCEE-EEEecCCCceEEEeccCcceEEEEEeCCccceEEEecCCCEEEe-CCCC
Confidence            111  011111  01123445666654200 0000                             00123333332 3344


Q ss_pred             cEEEEEEecCccccccccccccCCCceeEEEeeCCCCCCccEEEEEecCCeEEEEEeccCCccee------eeeec--cC
Q 022111          186 TVKVWKMYNGIWKMDCFPALQMHSDWVRSVAWAPNLGLPKSTIASASQDGTVVIWTCAKEGEQWE------GRVLK--DF  257 (302)
Q Consensus       186 ~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~l~s~s~D~~i~iwd~~~~~~~~~------~~~~~--~~  257 (302)
                      .+.|++....    .....+...+. ...+.++||+   ...++++..++++.+||+.+......      ..+..  +.
T Consensus       239 v~vvd~~~~~----~v~~~IPvgks-PhGv~vSPDG---kyl~~~~~~~~tvsv~d~~k~~~~~~~~~~~~~~~~~~~~~  310 (441)
T d1qnia2         239 VPVVDGRGES----EFTRYIPVPKN-PHGLNTSPDG---KYFIANGKLSPTVSVIAIDKLDDLFEDKIELRDTIVAEPEL  310 (441)
T ss_dssp             CCEEECSSSC----SSEEEECCBSS-CCCEEECTTS---CEEEEECTTSSBEEEEEGGGHHHHTTTSSCGGGGEEECCBC
T ss_pred             cEEEEcccCC----ceEEEEeCCCC-ccCceECCCC---CEEEEeCCcCCcEEEEEeehhhhHhhccCCcceEEEeeccc
Confidence            5555543322    11122222222 3568999997   24567888999999999875221000      00100  11


Q ss_pred             CCcEEEEEEccCCCEEEEecCC-ceEEeeec
Q 022111          258 KTPVWSVSWSLTGNLLAVADAN-NVTLWKEA  287 (302)
Q Consensus       258 ~~~v~~~~~spdg~~la~~~~d-~i~~w~~~  287 (302)
                      .-...-.+|.++|+.+.+...| .|..|+..
T Consensus       311 glgplh~~fd~~g~~yts~~~ds~v~kw~~~  341 (441)
T d1qnia2         311 GLGPLHTTFDGRGNAYTTLFIDSQVCKWNIA  341 (441)
T ss_dssp             CSCEEEEEECSSSEEEEEETTTTEEEEEEHH
T ss_pred             ccCcccceecCCceEEEcccccceEEEeccc
Confidence            1124557899999888888888 69999963

>d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP)
species: Squid (Loligo vulgaris) [TaxId: 6622]

Probab=98.51  E-value=0.00017  Score=59.44  Aligned_cols=253  Identities=9%  Similarity=0.048  Sum_probs=132.8

Q ss_pred             eeEEEEccCCCEEEEeeC-------CCcEEEEeecCCCceEEEE--ecCcccCeEEEEeeCCCCCCEEEEEeCCCeEEEE
Q 022111           14 VHDVAMDFYGKRLATASS-------DSSIKIIGLSNSASQHLAT--LKGHRGPVWQVAWAHPKFGSILASCSYDGQVIIW   84 (302)
Q Consensus        14 v~~~~~s~~~~~l~s~~~-------d~~v~lw~~~~~~~~~~~~--~~~h~~~v~~v~~~~~~~~~~l~s~s~D~~i~iw   84 (302)
                      ...++|+++|++.++...       +++|..|+...........  ...-.+.-..+.|.++  +++|+.+.....+...
T Consensus        20 ~EGpa~d~dG~ly~~~~~~~~~~~~~g~I~r~d~~~~~~~~~~~~~~~~~~g~P~Gl~~~~d--g~~l~vad~~~~i~~~   97 (314)
T d1pjxa_          20 AEGPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKPEVNGYGGIPAGCQCDRD--ANQLFVADMRLGLLVV   97 (314)
T ss_dssp             CEEEEECTTSCEEEEETTCEETTEECCEEEEECTTTCCEEEEECCEETTEECCEEEEEECSS--SSEEEEEETTTEEEEE
T ss_pred             CeEeEEeCCCCEEEEECccccccccCCEEEEEECCCCcEEEEECCccccCCCcceeEEEeCC--CCEEEEEECCCeEEEE
Confidence            456789999987765332       3567777765433221111  1111122356888653  6777777776778888


Q ss_pred             EcCCCCceeEEEE--ecCCC-CCeeEEEecCCCCCcEEEEEec-------------CCcEEEEEecCCCCeeeeeecccC
Q 022111           85 KEGNQNDWTQAHT--FNDHK-SSVNSIAWAPHELGLSLACGSS-------------DGNISVFTATADGGWDTTRIDQAH  148 (302)
Q Consensus        85 d~~~~~~~~~~~~--~~~h~-~~i~~l~~~pd~~~~~l~sg~~-------------d~~v~~~~~~~~~~~~~~~~~~~h  148 (302)
                      +.....  ..+..  ..+.. ...+.+++.|+  |.+.++-..             ...-++|.+..++......   ..
T Consensus        98 ~~~g~~--~~~~~~~~~g~~~~~pndl~~d~~--G~lyvtd~~~~~~~~~~~~~~~~~~G~v~~~~~dg~~~~~~---~~  170 (314)
T d1pjxa_          98 QTDGTF--EEIAKKDSEGRRMQGCNDCAFDYE--GNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTDGQMIQVD---TA  170 (314)
T ss_dssp             ETTSCE--EECCSBCTTSCBCBCCCEEEECTT--SCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTTSCEEEEE---EE
T ss_pred             eCCCcE--EEEEeccccccccCCCcEEEECCC--CCEEEecCccCcccccccceeccCCceEEEEeecCceeEee---CC
Confidence            865431  11110  11111 13577888887  555544221             1122344444333322111   11


Q ss_pred             CCCeEEEEeCCCCCCCceeecccCCCceeEEEeeCCCcEEEEEEecCccc--ccccccccc-CCCceeEEEeeCCCCCCc
Q 022111          149 PVGVTSVSWAPAMAPGALVGLGLLDPVQKLASCGCDNTVKVWKMYNGIWK--MDCFPALQM-HSDWVRSVAWAPNLGLPK  225 (302)
Q Consensus       149 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~D~~v~iwd~~~~~~~--~~~~~~~~~-h~~~v~~v~~~p~~~~~~  225 (302)
                      ...-+.++|+|+....         ...++++-+..+.|..||+......  ......+.+ +......+++.+++    
T Consensus       171 ~~~pNGi~~~~d~d~~---------~~~lyv~d~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~~pdGiavD~~G----  237 (314)
T d1pjxa_         171 FQFPNGIAVRHMNDGR---------PYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDEDN----  237 (314)
T ss_dssp             ESSEEEEEEEECTTSC---------EEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBTTC----
T ss_pred             cceeeeeEECCCCCcc---------eeEEEEEeecccceEEeeccCccccceeeEEEEccccccccceeeEEecCC----
Confidence            1123567777653110         0134556677888999987643111  011112222 22234568888775    


Q ss_pred             cEEEEEecCCeEEEEEeccCCcceeeeeeccCCCcEEEEEEccCCCEEEEecC-C-ceEEeeecCCce
Q 022111          226 STIASASQDGTVVIWTCAKEGEQWEGRVLKDFKTPVWSVSWSLTGNLLAVADA-N-NVTLWKEAVDGE  291 (302)
Q Consensus       226 ~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~la~~~~-d-~i~~w~~~~~~~  291 (302)
                      +..++....+.|.+||.+....  ...+ ........+++|.||++.|.++.. + .|...+....|+
T Consensus       238 nlyVa~~~~g~I~~~dp~~g~~--~~~i-~~p~~~~t~~afg~d~~~lyVt~~~~g~i~~~~~~~~G~  302 (314)
T d1pjxa_         238 NLLVANWGSSHIEVFGPDGGQP--KMRI-RCPFEKPSNLHFKPQTKTIFVTEHENNAVWKFEWQRNGK  302 (314)
T ss_dssp             CEEEEEETTTEEEEECTTCBSC--SEEE-ECSSSCEEEEEECTTSSEEEEEETTTTEEEEEECSSCBC
T ss_pred             cEEEEEcCCCEEEEEeCCCCEE--EEEE-ECCCCCEEEEEEeCCCCEEEEEECCCCcEEEEECCCCCh
Confidence            6677777788899998764321  1111 222345789999999975544433 3 577777777764

>d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP)
species: Squid (Loligo vulgaris) [TaxId: 6622]

Probab=98.23  E-value=0.00023  Score=58.67  Aligned_cols=206  Identities=11%  Similarity=0.091  Sum_probs=111.4

Q ss_pred             eeEEEEccCCCEEEEeeCCCcEEEEeecCCCceEEEEe-cCcc-cCeEEEEeeCCCCCCEEEEEeC-------------C
Q 022111           14 VHDVAMDFYGKRLATASSDSSIKIIGLSNSASQHLATL-KGHR-GPVWQVAWAHPKFGSILASCSY-------------D   78 (302)
Q Consensus        14 v~~~~~s~~~~~l~s~~~d~~v~lw~~~~~~~~~~~~~-~~h~-~~v~~v~~~~~~~~~~l~s~s~-------------D   78 (302)
                      -..+.|+++++.|+++.....+...+.+......+... .+.. .....+.+.+  +|++.+|-..             .
T Consensus        73 P~Gl~~~~dg~~l~vad~~~~i~~~~~~g~~~~~~~~~~~g~~~~~pndl~~d~--~G~lyvtd~~~~~~~~~~~~~~~~  150 (314)
T d1pjxa_          73 PAGCQCDRDANQLFVADMRLGLLVVQTDGTFEEIAKKDSEGRRMQGCNDCAFDY--EGNLWITAPAGEVAPADYTRSMQE  150 (314)
T ss_dssp             EEEEEECSSSSEEEEEETTTEEEEEETTSCEEECCSBCTTSCBCBCCCEEEECT--TSCEEEEECBCBCTTSCCCBTTSS
T ss_pred             ceeEEEeCCCCEEEEEECCCeEEEEeCCCcEEEEEeccccccccCCCcEEEECC--CCCEEEecCccCcccccccceecc
Confidence            34688999998888777777777777654221111100 1111 1245678764  3777776432             1


Q ss_pred             CeEEEEEcCCCCceeEEEEecCCCCCeeEEEecCCCCC---cEEEEEecCCcEEEEEecCCCCeeeee----ecccCCCC
Q 022111           79 GQVIIWKEGNQNDWTQAHTFNDHKSSVNSIAWAPHELG---LSLACGSSDGNISVFTATADGGWDTTR----IDQAHPVG  151 (302)
Q Consensus        79 ~~i~iwd~~~~~~~~~~~~~~~h~~~i~~l~~~pd~~~---~~l~sg~~d~~v~~~~~~~~~~~~~~~----~~~~h~~~  151 (302)
                      ..-++|.+........  .. ......+.++|+|+.++   .+.++-+..+.|..|++...+......    +...+...
T Consensus       151 ~~G~v~~~~~dg~~~~--~~-~~~~~pNGi~~~~d~d~~~~~lyv~d~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~~  227 (314)
T d1pjxa_         151 KFGSIYCFTTDGQMIQ--VD-TAFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGG  227 (314)
T ss_dssp             SCEEEEEECTTSCEEE--EE-EEESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCE
T ss_pred             CCceEEEEeecCceeE--ee-CCcceeeeeEECCCCCcceeEEEEEeecccceEEeeccCccccceeeEEEEcccccccc
Confidence            1223444432221111  11 12233478899887432   244455667788888876443221111    11001111


Q ss_pred             eEEEEeCCCCCCCceeecccCCCceeEEEeeCCCcEEEEEEecCccccccccccccCCCceeEEEeeCCCCCCccEEEEE
Q 022111          152 VTSVSWAPAMAPGALVGLGLLDPVQKLASCGCDNTVKVWKMYNGIWKMDCFPALQMHSDWVRSVAWAPNLGLPKSTIASA  231 (302)
Q Consensus       152 v~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~D~~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~l~s~  231 (302)
                      ...+++.              .++.++++....+.|.+||...+.    ....+........+++|.|++   ...+++.
T Consensus       228 pdGiavD--------------~~GnlyVa~~~~g~I~~~dp~~g~----~~~~i~~p~~~~t~~afg~d~---~~lyVt~  286 (314)
T d1pjxa_         228 ADGMDFD--------------EDNNLLVANWGSSHIEVFGPDGGQ----PKMRIRCPFEKPSNLHFKPQT---KTIFVTE  286 (314)
T ss_dssp             EEEEEEB--------------TTCCEEEEEETTTEEEEECTTCBS----CSEEEECSSSCEEEEEECTTS---SEEEEEE
T ss_pred             ceeeEEe--------------cCCcEEEEEcCCCEEEEEeCCCCE----EEEEEECCCCCEEEEEEeCCC---CEEEEEE
Confidence            1233333              345667777677889999876542    122233344568899999985   2467888


Q ss_pred             ecCCeEEEEEeccC
Q 022111          232 SQDGTVVIWTCAKE  245 (302)
Q Consensus       232 s~D~~i~iwd~~~~  245 (302)
                      +.++.|.-.++...
T Consensus       287 ~~~g~i~~~~~~~~  300 (314)
T d1pjxa_         287 HENNAVWKFEWQRN  300 (314)
T ss_dssp             TTTTEEEEEECSSC
T ss_pred             CCCCcEEEEECCCC
Confidence            88888877776543

>d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Lactonase Drp35
species: Staphylococcus aureus [TaxId: 1280]

Probab=97.95  E-value=0.0032  Score=51.55  Aligned_cols=233  Identities=11%  Similarity=0.028  Sum_probs=124.0

Q ss_pred             eeEEEEccCCCEEEEeeCCCcEEEEeecCCCceEEEEecCcccCeEEEEeeCCCCCCEEEEEeCC--CeEEEE--EcCCC
Q 022111           14 VHDVAMDFYGKRLATASSDSSIKIIGLSNSASQHLATLKGHRGPVWQVAWAHPKFGSILASCSYD--GQVIIW--KEGNQ   89 (302)
Q Consensus        14 v~~~~~s~~~~~l~s~~~d~~v~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~s~D--~~i~iw--d~~~~   89 (302)
                      +..++|+++|+..++-...+.|+.|+.+...  ....+.........+++.+  +|+++++...+  ....++  +....
T Consensus        42 lEG~~~D~~G~Ly~~D~~~g~I~ri~p~g~~--~~~~~~~~~~~p~gla~~~--dG~l~va~~~~~~~~~~i~~~~~~~~  117 (319)
T d2dg1a1          42 LEGLNFDRQGQLFLLDVFEGNIFKINPETKE--IKRPFVSHKANPAAIKIHK--DGRLFVCYLGDFKSTGGIFAATENGD  117 (319)
T ss_dssp             EEEEEECTTSCEEEEETTTCEEEEECTTTCC--EEEEEECSSSSEEEEEECT--TSCEEEEECTTSSSCCEEEEECTTSC
T ss_pred             cEeCEECCCCCEEEEECCCCEEEEEECCCCe--EEEEEeCCCCCeeEEEECC--CCCEEEEecCCCccceeEEEEcCCCc
Confidence            4678999999877776678888777765432  2222333445567899865  37777665432  233343  33322


Q ss_pred             CceeEEEEecCCCCCeeEEEecCCCCCcEEEEEecC----CcEEEEEecCCCCeeeeeecccCCCCeEEEEeCCCCCCCc
Q 022111           90 NDWTQAHTFNDHKSSVNSIAWAPHELGLSLACGSSD----GNISVFTATADGGWDTTRIDQAHPVGVTSVSWAPAMAPGA  165 (302)
Q Consensus        90 ~~~~~~~~~~~h~~~i~~l~~~pd~~~~~l~sg~~d----~~v~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~  165 (302)
                      .. .....-..-....+.+.+.|+  |.+.++-...    ..-.+|-+..++.. ...+. ......+.++|+|++    
T Consensus       118 ~~-~~~~~~~~~~~~~nd~~~d~~--G~l~vtd~~~~~~~~~g~v~~~~~dg~~-~~~~~-~~~~~pnGia~s~dg----  188 (319)
T d2dg1a1         118 NL-QDIIEDLSTAYCIDDMVFDSK--GGFYFTDFRGYSTNPLGGVYYVSPDFRT-VTPII-QNISVANGIALSTDE----  188 (319)
T ss_dssp             SC-EEEECSSSSCCCEEEEEECTT--SCEEEEECCCBTTBCCEEEEEECTTSCC-EEEEE-EEESSEEEEEECTTS----
T ss_pred             ee-eeeccCCCcccCCcceeEEec--cceeecccccccccCcceeEEEecccce-eEEEe-eccceeeeeeecccc----
Confidence            11 111110111234678888887  5544442211    12234444333211 11111 111224668888764    


Q ss_pred             eeecccCCCceeEEEeeCCCcEEEEEEecCccccccc-----cccccCCCceeEEEeeCCCCCCccEEEEEecCCeEEEE
Q 022111          166 LVGLGLLDPVQKLASCGCDNTVKVWKMYNGIWKMDCF-----PALQMHSDWVRSVAWAPNLGLPKSTIASASQDGTVVIW  240 (302)
Q Consensus       166 ~~~~~~~~~~~~l~s~~~D~~v~iwd~~~~~~~~~~~-----~~~~~h~~~v~~v~~~p~~~~~~~~l~s~s~D~~i~iw  240 (302)
                               ..++++-+..+.|..||+..........     ..+.+. ..--.+++.+++    +..++....+.|.+|
T Consensus       189 ---------~~lyvad~~~~~I~~~d~~~~g~~~~~~~~~~~~~~~~~-~~PdGl~vD~~G----~l~Va~~~~g~V~~~  254 (319)
T d2dg1a1         189 ---------KVLWVTETTANRLHRIALEDDGVTIQPFGATIPYYFTGH-EGPDSCCIDSDD----NLYVAMYGQGRVLVF  254 (319)
T ss_dssp             ---------SEEEEEEGGGTEEEEEEECTTSSSEEEEEEEEEEECCSS-SEEEEEEEBTTC----CEEEEEETTTEEEEE
T ss_pred             ---------ceEEEecccCCceEEEEEcCCCceeccccceeeeccCCc-cceeeeeEcCCC----CEEEEEcCCCEEEEE
Confidence                     2456777788899999986432111100     011111 123468888775    677888889999999


Q ss_pred             EeccCCcceeeeee-c----cCCCcEEEEEEccCCCEEEEe
Q 022111          241 TCAKEGEQWEGRVL-K----DFKTPVWSVSWSLTGNLLAVA  276 (302)
Q Consensus       241 d~~~~~~~~~~~~~-~----~~~~~v~~~~~spdg~~la~~  276 (302)
                      |....  . ..++. .    ++...+.+++|.|+++.+.+.
T Consensus       255 ~p~G~--~-l~~i~~P~~~~~~~~~~~~~~~~~~~~~~~~t  292 (319)
T d2dg1a1         255 NKRGY--P-IGQILIPGRDEGHMLRSTHPQFIPGTNQLIIC  292 (319)
T ss_dssp             CTTSC--E-EEEEECTTGGGTCSCBCCEEEECTTSCEEEEE
T ss_pred             CCCCc--E-EEEEeCCCcCCCcCceeeeEEEeCCCCEEEEE
Confidence            85421  1 11221 1    122346789999988766554

>d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Serine/threonine-protein kinase PknD
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.86  E-value=0.0012  Score=52.44  Aligned_cols=194  Identities=12%  Similarity=0.070  Sum_probs=109.9

Q ss_pred             eeEEEEccCCCEEEEeeCCCcEEEEeecCCCceEEEEecCcccCeEEEEeeCCCCCCEEEEEeCCCeEEEEEcCCCCcee
Q 022111           14 VHDVAMDFYGKRLATASSDSSIKIIGLSNSASQHLATLKGHRGPVWQVAWAHPKFGSILASCSYDGQVIIWKEGNQNDWT   93 (302)
Q Consensus        14 v~~~~~s~~~~~l~s~~~d~~v~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~s~D~~i~iwd~~~~~~~~   93 (302)
                      ...++++++++.+++....+.+++++-..  ...+....+ ......|++.+  +++++++-..+..+..++......  
T Consensus        59 p~gvav~~~g~i~v~d~~~~~i~~~~~~~--~~~~~~~~~-~~~p~~iavd~--~g~i~v~d~~~~~~~~~~~~~~~~--  131 (260)
T d1rwia_          59 PQGLAVDGAGTVYVTDFNNRVVTLAAGSN--NQTVLPFDG-LNYPEGLAVDT--QGAVYVADRGNNRVVKLAAGSKTQ--  131 (260)
T ss_dssp             CCCEEECTTCCEEEEETTTEEEEECTTCS--CCEECCCCS-CCSEEEEEECT--TCCEEEEEGGGTEEEEECTTCSSC--
T ss_pred             ceEEEEcCCCCEEEeeeeeceeeeeeecc--ceeeeeeee-eeecccccccc--cceeEeecccccccccccccccee--
Confidence            45688999998877766666666554322  222222222 23467888865  377777766677777776543221  


Q ss_pred             EEEEecCCCCCeeEEEecCCCCCcEEEEEecCCcEEEEEecCCCCeeeeeecccCCCCeEEEEeCCCCCCCceeecccCC
Q 022111           94 QAHTFNDHKSSVNSIAWAPHELGLSLACGSSDGNISVFTATADGGWDTTRIDQAHPVGVTSVSWAPAMAPGALVGLGLLD  173 (302)
Q Consensus        94 ~~~~~~~h~~~i~~l~~~pd~~~~~l~sg~~d~~v~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~  173 (302)
                      ...... .......+++.|+  +.++++...++.|..++......   .............+++.++             
T Consensus       132 ~~~~~~-~~~~p~~i~~~~~--g~~~v~~~~~~~i~~~d~~~~~~---~~~~~~~~~~p~gi~~d~~-------------  192 (260)
T d1rwia_         132 TVLPFT-GLNDPDGVAVDNS--GNVYVTDTDNNRVVKLEAESNNQ---VVLPFTDITAPWGIAVDEA-------------  192 (260)
T ss_dssp             EECCCC-SCCSCCEEEECTT--CCEEEEEGGGTEEEEECTTTCCE---EECCCSSCCSEEEEEECTT-------------
T ss_pred             eeeeec-ccCCcceeeecCC--CCEeeecccccccccccccccee---eeeeccccCCCccceeeee-------------
Confidence            111112 2334578999886  56777777778888887543221   1111122223455666553             


Q ss_pred             CceeEEEeeCCCcEEEEEEecCccccccccccccCCCceeEEEeeCCCCCCccEEEEEecCCeEEEEEe
Q 022111          174 PVQKLASCGCDNTVKVWKMYNGIWKMDCFPALQMHSDWVRSVAWAPNLGLPKSTIASASQDGTVVIWTC  242 (302)
Q Consensus       174 ~~~~l~s~~~D~~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~l~s~s~D~~i~iwd~  242 (302)
                       +.++++....+.|..++......  ... . ...-.....|++++++    +.+++-..++.|+.++.
T Consensus       193 -g~l~vsd~~~~~i~~~~~~~~~~--~~~-~-~~~~~~P~~i~~d~~g----~l~vad~~~~rI~~i~~  252 (260)
T d1rwia_         193 -GTVYVTEHNTNQVVKLLAGSTTS--TVL-P-FTGLNTPLAVAVDSDR----TVYVADRGNDRVVKLTS  252 (260)
T ss_dssp             -CCEEEEETTTTEEEEECTTCSCC--EEC-C-CCSCCCEEEEEECTTC----CEEEEEGGGTEEEEECC
T ss_pred             -eeeeeeecCCCEEEEEeCCCCeE--EEE-c-cCCCCCeEEEEEeCCC----CEEEEECCCCEEEEEeC
Confidence             46777777777777776543311  111 1 1112345789999875    66777666676665543

>d1xfda1 b.70.3.1 (A:127-591) Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.84  E-value=0.0024  Score=55.40  Aligned_cols=114  Identities=10%  Similarity=0.112  Sum_probs=67.6

Q ss_pred             ceeEEEEccCCCEEEEee---------CCCcEEEEeecCCCceEEEEecCcccCeEEEEeeCCCCCCEEEEEeCCCeEEE
Q 022111           13 TVHDVAMDFYGKRLATAS---------SDSSIKIIGLSNSASQHLATLKGHRGPVWQVAWAHPKFGSILASCSYDGQVII   83 (302)
Q Consensus        13 ~v~~~~~s~~~~~l~s~~---------~d~~v~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~s~D~~i~i   83 (302)
                      .+....||||+++++...         ..+.+.++|+..+....+.........+....|+|+  |+.||-.. ++.|.+
T Consensus        62 ~~~~~~~SpD~~~vl~~~~~~~~~r~s~~~~~~i~d~~~~~~~~l~~~~~~~~~l~~~~wSPD--G~~iafv~-~~nl~~  138 (465)
T d1xfda1          62 RAIRYEISPDREYALFSYNVEPIYQHSYTGYYVLSKIPHGDPQSLDPPEVSNAKLQYAGWGPK--GQQLIFIF-ENNIYY  138 (465)
T ss_dssp             TCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEEESSSCCCEECCCTTCCSCCCSBCCBCSS--TTCEEEEE-TTEEEE
T ss_pred             ccceeEECCCCCeEEEEEcccceeEeeccccEEEEEccCCceeeccCccCCccccceeeeccC--CceEEEEe-cceEEE
Confidence            456677999999887653         346788899876554444333333445556788875  78887765 456666


Q ss_pred             EEcCCCCceeEEEEecCCCCC-----------------eeEEEecCCCCCcEEEEEe-cCCcEEEEEe
Q 022111           84 WKEGNQNDWTQAHTFNDHKSS-----------------VNSIAWAPHELGLSLACGS-SDGNISVFTA  133 (302)
Q Consensus        84 wd~~~~~~~~~~~~~~~h~~~-----------------i~~l~~~pd~~~~~l~sg~-~d~~v~~~~~  133 (302)
                      .+...+.....  +..+-.+.                 -..+.||||  |+.||... ++..|..|.+
T Consensus       139 ~~~~~~~~~~l--t~~g~~~~i~nG~~d~vyeee~~~~~~a~~WSPD--gk~iaf~~~D~s~V~~~~~  202 (465)
T d1xfda1         139 CAHVGKQAIRV--VSTGKEGVIYNGLSDWLYEEEILKTHIAHWWSPD--GTRLAYAAINDSRVPIMEL  202 (465)
T ss_dssp             ESSSSSCCEEE--ECCCBTTTEEEEECCHHHHHTTSSSSEEEEECTT--SSEEEEEEEECTTSCEEEE
T ss_pred             EecCCCceEEE--ecccCcceeeccccchhhhhhhccccceEEECCC--CCeEEEEEecccccceeec
Confidence            66544332111  11111111                 247789999  66777754 3344544443

>d1xfda1 b.70.3.1 (A:127-591) Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.77  E-value=0.0014  Score=56.93  Aligned_cols=95  Identities=8%  Similarity=0.092  Sum_probs=53.7

Q ss_pred             EEeeCCCCCCEEEEEeCCCeEEEEEcCCCCceeEEEEecCCCCCeeEEEecCCCCCcEEEEEe---------cCCcEEEE
Q 022111           61 VAWAHPKFGSILASCSYDGQVIIWKEGNQNDWTQAHTFNDHKSSVNSIAWAPHELGLSLACGS---------SDGNISVF  131 (302)
Q Consensus        61 v~~~~~~~~~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~h~~~i~~l~~~pd~~~~~l~sg~---------~d~~v~~~  131 (302)
                      ..|.++  +.++.. ..++.+.+||+.++.....+.........+....||||  +..++...         ..+.+.+|
T Consensus        22 ~~W~~~--~~~~~~-~~~g~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~SpD--~~~vl~~~~~~~~~r~s~~~~~~i~   96 (465)
T d1xfda1          22 AKWISD--TEFIYR-EQKGTVRLWNVETNTSTVLIEGKKIESLRAIRYEISPD--REYALFSYNVEPIYQHSYTGYYVLS   96 (465)
T ss_dssp             CCBSSS--SCBCCC-CSSSCEEEBCGGGCCCEEEECTTTTTTTTCSEEEECTT--SSEEEEEESCCCCSSSCCCSEEEEE
T ss_pred             CEEeCC--CcEEEE-eCCCcEEEEECCCCCEEEEEcCccccccccceeEECCC--CCeEEEEEcccceeEeeccccEEEE
Confidence            356543  455433 56788999999776432222222223346778889999  55555543         34577888


Q ss_pred             EecCCCCeeeeeecccCCCCeEEEEeCCCC
Q 022111          132 TATADGGWDTTRIDQAHPVGVTSVSWAPAM  161 (302)
Q Consensus       132 ~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~  161 (302)
                      |+.+.....+.... .....+....|||++
T Consensus        97 d~~~~~~~~l~~~~-~~~~~l~~~~wSPDG  125 (465)
T d1xfda1          97 KIPHGDPQSLDPPE-VSNAKLQYAGWGPKG  125 (465)
T ss_dssp             ESSSCCCEECCCTT-CCSCCCSBCCBCSST
T ss_pred             EccCCceeeccCcc-CCccccceeeeccCC
Confidence            88755433222111 222334557788875

>d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Tricorn protease N-terminal domain
family: Tricorn protease N-terminal domain
domain: Tricorn protease N-terminal domain
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=97.35  E-value=0.02  Score=44.70  Aligned_cols=92  Identities=10%  Similarity=0.134  Sum_probs=54.3

Q ss_pred             EccC--CCEEEEeeCCCcEEEEeecCCCceEEEEecCcccCeEEEEeeCCCCCCEEEEEeC----CCe--EEEEEcCCCC
Q 022111           19 MDFY--GKRLATASSDSSIKIIGLSNSASQHLATLKGHRGPVWQVAWAHPKFGSILASCSY----DGQ--VIIWKEGNQN   90 (302)
Q Consensus        19 ~s~~--~~~l~s~~~d~~v~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~s~----D~~--i~iwd~~~~~   90 (302)
                      .+||  |+++|=.+ ++.|.+.++.++..   ..|..+.+.+...+|+|+  |+.||-...    +..  |.+.+...+.
T Consensus         6 ~sPdi~G~~v~f~~-~~dl~~~d~~~g~~---~~Lt~~~~~~~~p~~SPD--G~~iaf~~~~~~~~~~~~i~~~~~~~g~   79 (281)
T d1k32a2           6 LNPDIHGDRIIFVC-CDDLWEHDLKSGST---RKIVSNLGVINNARFFPD--GRKIAIRVMRGSSLNTADLYFYNGENGE   79 (281)
T ss_dssp             EEEEEETTEEEEEE-TTEEEEEETTTCCE---EEEECSSSEEEEEEECTT--SSEEEEEEEESTTCCEEEEEEEETTTTE
T ss_pred             cCCCCCCCEEEEEe-CCcEEEEECCCCCE---EEEecCCCcccCEEECCC--CCEEEEEEeeCCCCCceEEEEEEecCCc
Confidence            4688  98887544 55677778765432   345556667888999875  888775432    222  4444444331


Q ss_pred             ceeEEEEecC-------CCCCeeEEEecCCCCCcEEEEE
Q 022111           91 DWTQAHTFND-------HKSSVNSIAWAPHELGLSLACG  122 (302)
Q Consensus        91 ~~~~~~~~~~-------h~~~i~~l~~~pd~~~~~l~sg  122 (302)
                          ...+..       .........|+||  ++.|+..
T Consensus        80 ----~~~lt~~~~~~~~~~~~~~~~~~spd--g~~l~~~  112 (281)
T d1k32a2          80 ----IKRITYFSGKSTGRRMFTDVAGFDPD--GNLIIST  112 (281)
T ss_dssp             ----EEECCCCCEEEETTEECSEEEEECTT--CCEEEEE
T ss_pred             ----eEEeeecCCCccCccccccccccCCC--CCEEEEE
Confidence                222221       2234567889998  5566654

>d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Lactonase Drp35
species: Staphylococcus aureus [TaxId: 1280]

Probab=97.34  E-value=0.026  Score=45.80  Aligned_cols=203  Identities=11%  Similarity=0.123  Sum_probs=105.7

Q ss_pred             CeEEEEeeCCCCCCEEEEEeCCCeEEEEEcCCCCceeEEEEecCCCCCeeEEEecCCCCCcEEEEEecC--CcEEEEEec
Q 022111           57 PVWQVAWAHPKFGSILASCSYDGQVIIWKEGNQNDWTQAHTFNDHKSSVNSIAWAPHELGLSLACGSSD--GNISVFTAT  134 (302)
Q Consensus        57 ~v~~v~~~~~~~~~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~h~~~i~~l~~~pd~~~~~l~sg~~d--~~v~~~~~~  134 (302)
                      .+..++|.+  +|++.++-...++|.-|+.....   ....+.........+++.||  |.++++...+  ....++...
T Consensus        41 ~lEG~~~D~--~G~Ly~~D~~~g~I~ri~p~g~~---~~~~~~~~~~~p~gla~~~d--G~l~va~~~~~~~~~~i~~~~  113 (319)
T d2dg1a1          41 QLEGLNFDR--QGQLFLLDVFEGNIFKINPETKE---IKRPFVSHKANPAAIKIHKD--GRLFVCYLGDFKSTGGIFAAT  113 (319)
T ss_dssp             CEEEEEECT--TSCEEEEETTTCEEEEECTTTCC---EEEEEECSSSSEEEEEECTT--SCEEEEECTTSSSCCEEEEEC
T ss_pred             CcEeCEECC--CCCEEEEECCCCEEEEEECCCCe---EEEEEeCCCCCeeEEEECCC--CCEEEEecCCCccceeEEEEc
Confidence            356788864  47887777788888888875542   22233334556789999987  6566554332  233444443


Q ss_pred             CCCCeeeeeecc-cCCCCeEEEEeCCCCCCCceeecccCCCceeEEEeeC----CCcEEEEEEecCccccccccccccCC
Q 022111          135 ADGGWDTTRIDQ-AHPVGVTSVSWAPAMAPGALVGLGLLDPVQKLASCGC----DNTVKVWKMYNGIWKMDCFPALQMHS  209 (302)
Q Consensus       135 ~~~~~~~~~~~~-~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~----D~~v~iwd~~~~~~~~~~~~~~~~h~  209 (302)
                      ..+......... .-......+.+.++              |.+.++...    +..-.+|.+......   +..+...-
T Consensus       114 ~~~~~~~~~~~~~~~~~~~nd~~~d~~--------------G~l~vtd~~~~~~~~~g~v~~~~~dg~~---~~~~~~~~  176 (319)
T d2dg1a1         114 ENGDNLQDIIEDLSTAYCIDDMVFDSK--------------GGFYFTDFRGYSTNPLGGVYYVSPDFRT---VTPIIQNI  176 (319)
T ss_dssp             TTSCSCEEEECSSSSCCCEEEEEECTT--------------SCEEEEECCCBTTBCCEEEEEECTTSCC---EEEEEEEE
T ss_pred             CCCceeeeeccCCCcccCCcceeEEec--------------cceeecccccccccCcceeEEEecccce---eEEEeecc
Confidence            222111111110 11122445555554              333333211    111223333211000   01111111


Q ss_pred             CceeEEEeeCCCCCCccEEEEEecCCeEEEEEeccCCccee---eeeeccC--CCcEEEEEEccCCCEEEEecCC-ceEE
Q 022111          210 DWVRSVAWAPNLGLPKSTIASASQDGTVVIWTCAKEGEQWE---GRVLKDF--KTPVWSVSWSLTGNLLAVADAN-NVTL  283 (302)
Q Consensus       210 ~~v~~v~~~p~~~~~~~~l~s~s~D~~i~iwd~~~~~~~~~---~~~~~~~--~~~v~~~~~spdg~~la~~~~d-~i~~  283 (302)
                      ..-+.|+|+|++   ....++-+..+.|..|++........   .......  ....-.+++.++|++.++...+ .|.+
T Consensus       177 ~~pnGia~s~dg---~~lyvad~~~~~I~~~d~~~~g~~~~~~~~~~~~~~~~~~~PdGl~vD~~G~l~Va~~~~g~V~~  253 (319)
T d2dg1a1         177 SVANGIALSTDE---KVLWVTETTANRLHRIALEDDGVTIQPFGATIPYYFTGHEGPDSCCIDSDDNLYVAMYGQGRVLV  253 (319)
T ss_dssp             SSEEEEEECTTS---SEEEEEEGGGTEEEEEEECTTSSSEEEEEEEEEEECCSSSEEEEEEEBTTCCEEEEEETTTEEEE
T ss_pred             ceeeeeeecccc---ceEEEecccCCceEEEEEcCCCceeccccceeeeccCCccceeeeeEcCCCCEEEEEcCCCEEEE
Confidence            234779999996   23567777889999999865322111   1111111  1225679999999987776555 7999


Q ss_pred             eee
Q 022111          284 WKE  286 (302)
Q Consensus       284 w~~  286 (302)
                      ++.
T Consensus       254 ~~p  256 (319)
T d2dg1a1         254 FNK  256 (319)
T ss_dssp             ECT
T ss_pred             ECC
Confidence            984

>d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Galactose oxidase, central domain
family: Galactose oxidase, central domain
domain: Galactose oxidase, central domain
species: Fungi (Fusarium sp.) [TaxId: 29916]

Probab=96.97  E-value=0.049  Score=44.86  Aligned_cols=115  Identities=14%  Similarity=0.114  Sum_probs=66.0

Q ss_pred             eEEEEccCCCEEEEeeCCC-----------cEEEEeecCCCceEEEEe-cCcccCeEEEEeeCCCCCCEEEEEeCC-CeE
Q 022111           15 HDVAMDFYGKRLATASSDS-----------SIKIIGLSNSASQHLATL-KGHRGPVWQVAWAHPKFGSILASCSYD-GQV   81 (302)
Q Consensus        15 ~~~~~s~~~~~l~s~~~d~-----------~v~lw~~~~~~~~~~~~~-~~h~~~v~~v~~~~~~~~~~l~s~s~D-~~i   81 (302)
                      ...+...+|+.++-|+.+.           .+.+||...........+ ..|........+.+  ++++++.|+.+ ..+
T Consensus        23 ~~a~~~~~gkv~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~~--~g~i~v~Gg~~~~~~  100 (387)
T d1k3ia3          23 AAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKHDMFCPGISMDG--NGQIVVTGGNDAKKT  100 (387)
T ss_dssp             EEEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECSCCCSSCEEEECT--TSCEEEECSSSTTCE
T ss_pred             EEEEEeeCCEEEEEEeecCcccCCCCCceeEEEEEECCCCcEeecCCCCCCcccceeEEEEec--CCcEEEeecCCCcce
Confidence            3344567889888888531           267899876554333222 23333333445544  37888888655 579


Q ss_pred             EEEEcCCCCceeEEEEecCCCCCeeEEEecCCCCCcEEEEEecC------CcEEEEEecC
Q 022111           82 IIWKEGNQNDWTQAHTFNDHKSSVNSIAWAPHELGLSLACGSSD------GNISVFTATA  135 (302)
Q Consensus        82 ~iwd~~~~~~~~~~~~~~~h~~~i~~l~~~pd~~~~~l~sg~~d------~~v~~~~~~~  135 (302)
                      .+||..+. .|............ -+++..+|  +.+++.|+.+      +.+.+||...
T Consensus       101 ~~yd~~~~-~w~~~~~~~~~r~~-~~~~~~~d--G~v~v~GG~~~~~~~~~~v~~yd~~~  156 (387)
T d1k3ia3         101 SLYDSSSD-SWIPGPDMQVARGY-QSSATMSD--GRVFTIGGSWSGGVFEKNGEVYSPSS  156 (387)
T ss_dssp             EEEEGGGT-EEEECCCCSSCCSS-CEEEECTT--SCEEEECCCCCSSSCCCCEEEEETTT
T ss_pred             eEecCccC-cccccccccccccc-cceeeecC--CceeeeccccccccccceeeeecCCC
Confidence            99998764 34433222211111 23444555  6677777643      3678888653

>d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Brain tumor cg10719-pa
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=96.85  E-value=0.072  Score=42.04  Aligned_cols=155  Identities=17%  Similarity=0.154  Sum_probs=91.6

Q ss_pred             ccCeEEEEeeCCCCCCEEEEEeCCCeEEEEEcCCCCceeEEEEe--cCCCCCeeEEEecCCCCCcEEEEEecCCcEEEEE
Q 022111           55 RGPVWQVAWAHPKFGSILASCSYDGQVIIWKEGNQNDWTQAHTF--NDHKSSVNSIAWAPHELGLSLACGSSDGNISVFT  132 (302)
Q Consensus        55 ~~~v~~v~~~~~~~~~~l~s~s~D~~i~iwd~~~~~~~~~~~~~--~~h~~~i~~l~~~pd~~~~~l~sg~~d~~v~~~~  132 (302)
                      ......+++.+  .+.++++....+.+.+++....    .+.++  ..+......+++.++  +.++++....+.|.+|+
T Consensus       113 ~~~p~~~avd~--~G~i~v~~~~~~~~~~~~~~g~----~~~~~g~~~~~~~~~~i~~d~~--g~i~v~d~~~~~V~~~d  184 (279)
T d1q7fa_         113 LQHPRGVTVDN--KGRIIVVECKVMRVIIFDQNGN----VLHKFGCSKHLEFPNGVVVNDK--QEIFISDNRAHCVKVFN  184 (279)
T ss_dssp             CSCEEEEEECT--TSCEEEEETTTTEEEEECTTSC----EEEEEECTTTCSSEEEEEECSS--SEEEEEEGGGTEEEEEE
T ss_pred             ccccceecccc--CCcEEEEeeccceeeEeccCCc----eeecccccccccccceeeeccc--eeEEeeeccccceeeee
Confidence            34456677653  3777777677777777765432    23333  345667788888776  66788888888999997


Q ss_pred             ecCCCCeeeeeec-ccCCCCeEEEEeCCCCCCCceeecccCCCceeEEEeeC-CCcEEEEEEecCccccccccccc--cC
Q 022111          133 ATADGGWDTTRID-QAHPVGVTSVSWAPAMAPGALVGLGLLDPVQKLASCGC-DNTVKVWKMYNGIWKMDCFPALQ--MH  208 (302)
Q Consensus       133 ~~~~~~~~~~~~~-~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~-D~~v~iwd~~~~~~~~~~~~~~~--~h  208 (302)
                      ..  +.. +..+. .+.......++..++              +..+++-.. +..|.+|+.. +.    .+.++.  ..
T Consensus       185 ~~--G~~-~~~~g~~g~~~~P~giavD~~--------------G~i~Vad~~~~~~v~~f~~~-G~----~~~~~~~~~~  242 (279)
T d1q7fa_         185 YE--GQY-LRQIGGEGITNYPIGVGINSN--------------GEILIADNHNNFNLTIFTQD-GQ----LISALESKVK  242 (279)
T ss_dssp             TT--CCE-EEEESCTTTSCSEEEEEECTT--------------CCEEEEECSSSCEEEEECTT-SC----EEEEEEESSC
T ss_pred             cC--Cce-eeeecccccccCCcccccccC--------------CeEEEEECCCCcEEEEECCC-CC----EEEEEeCCCC
Confidence            53  222 12221 122333455666554              355555433 4468888743 32    112221  12


Q ss_pred             CCceeEEEeeCCCCCCccEEEEEecCCeEEEEEecc
Q 022111          209 SDWVRSVAWAPNLGLPKSTIASASQDGTVVIWTCAK  244 (302)
Q Consensus       209 ~~~v~~v~~~p~~~~~~~~l~s~s~D~~i~iwd~~~  244 (302)
                      ......|++.|++    . |+..+.++.|++|....
T Consensus       243 ~~~p~~vav~~dG----~-l~V~~~n~~v~~fr~~~  273 (279)
T d1q7fa_         243 HAQCFDVALMDDG----S-VVLASKDYRLYIYRYVQ  273 (279)
T ss_dssp             CSCEEEEEEETTT----E-EEEEETTTEEEEEECSC
T ss_pred             CCCEeEEEEeCCC----c-EEEEeCCCeEEEEEeee
Confidence            2346789999985    4 44456789999998753

>d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Regucalcin
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=96.41  E-value=0.16  Score=40.44  Aligned_cols=195  Identities=13%  Similarity=0.075  Sum_probs=97.8

Q ss_pred             cceeEEEEccCCCEEEEeeCCCcEEEEeecCCCceEEEEecCc--ccCeEEEEeeCCCCCCEEEEEeC----CCeEEEEE
Q 022111           12 DTVHDVAMDFYGKRLATASSDSSIKIIGLSNSASQHLATLKGH--RGPVWQVAWAHPKFGSILASCSY----DGQVIIWK   85 (302)
Q Consensus        12 ~~v~~~~~s~~~~~l~s~~~d~~v~lw~~~~~~~~~~~~~~~h--~~~v~~v~~~~~~~~~~l~s~s~----D~~i~iwd   85 (302)
                      ..+.++++..+|+++++ +.+ .+.++|..++..+.+......  ...++.+.+.+  +|++.++...    .+.-.+|.
T Consensus        59 ~~~~~i~~~~dg~l~va-~~~-gl~~~d~~tg~~~~l~~~~~~~~~~~~nd~~vd~--~G~iw~~~~~~~~~~~~g~l~~  134 (295)
T d2ghsa1          59 FMGSALAKISDSKQLIA-SDD-GLFLRDTATGVLTLHAELESDLPGNRSNDGRMHP--SGALWIGTMGRKAETGAGSIYH  134 (295)
T ss_dssp             SCEEEEEEEETTEEEEE-ETT-EEEEEETTTCCEEEEECSSTTCTTEEEEEEEECT--TSCEEEEEEETTCCTTCEEEEE
T ss_pred             CCcEEEEEecCCCEEEE-EeC-ccEEeecccceeeEEeeeecCCCcccceeeEECC--CCCEEEEeccccccccceeEee
Confidence            45677888888876664 444 478888766544333322221  12356777654  3776665432    23445666


Q ss_pred             cCCCCceeEEEEecCCCCCeeEEEecCCCCCcEEEEEecCCcEEEEEecCCCCeeeeeecccCCCCeEEEEeCCCCCCCc
Q 022111           86 EGNQNDWTQAHTFNDHKSSVNSIAWAPHELGLSLACGSSDGNISVFTATADGGWDTTRIDQAHPVGVTSVSWAPAMAPGA  165 (302)
Q Consensus        86 ~~~~~~~~~~~~~~~h~~~i~~l~~~pd~~~~~l~sg~~d~~v~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~  165 (302)
                      +..+.   ....+. .-...+.++|+|+.. .++.+-+..+.|..|++..........      . -.-+.  .....+.
T Consensus       135 ~~~g~---~~~~~~-~~~~~Ng~~~s~d~~-~l~~~dt~~~~I~~~~~d~~~~~~~~~------~-~~~~~--~~~~~g~  200 (295)
T d2ghsa1         135 VAKGK---VTKLFA-DISIPNSICFSPDGT-TGYFVDTKVNRLMRVPLDARTGLPTGK------A-EVFID--STGIKGG  200 (295)
T ss_dssp             EETTE---EEEEEE-EESSEEEEEECTTSC-EEEEEETTTCEEEEEEBCTTTCCBSSC------C-EEEEE--CTTSSSE
T ss_pred             ecCCc---EEEEee-ccCCcceeeecCCCc-eEEEeecccceeeEeeecccccccccc------e-EEEec--cCccccc
Confidence            54432   111111 223457899999842 345666677888888775322111000      0 00000  0011111


Q ss_pred             eeecccCCCceeEEEeeCCCcEEEEEEecCccccccccccccCCCceeEEEee-CCCCCCccEEEEEe
Q 022111          166 LVGLGLLDPVQKLASCGCDNTVKVWKMYNGIWKMDCFPALQMHSDWVRSVAWA-PNLGLPKSTIASAS  232 (302)
Q Consensus       166 ~~~~~~~~~~~~l~s~~~D~~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~~~-p~~~~~~~~l~s~s  232 (302)
                      .-++....++.+.++.-..+.|..||.. +.    .+..+..-...+++++|- ||+   ...++|.+
T Consensus       201 pdG~~vD~~GnlWva~~~~g~V~~~dp~-G~----~~~~i~lP~~~~T~~~FGG~d~---~~LyvTta  260 (295)
T d2ghsa1         201 MDGSVCDAEGHIWNARWGEGAVDRYDTD-GN----HIARYEVPGKQTTCPAFIGPDA---SRLLVTSA  260 (295)
T ss_dssp             EEEEEECTTSCEEEEEETTTEEEEECTT-CC----EEEEEECSCSBEEEEEEESTTS---CEEEEEEB
T ss_pred             ccceEEcCCCCEEeeeeCCCceEEecCC-Cc----EeeEecCCCCceEEEEEeCCCC---CEEEEEEC
Confidence            1112222334555555556778888854 32    112222112458999995 664   24455543

>d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Galactose oxidase, central domain
family: Galactose oxidase, central domain
domain: Galactose oxidase, central domain
species: Fungi (Fusarium sp.) [TaxId: 29916]

Probab=94.77  E-value=0.17  Score=41.34  Aligned_cols=115  Identities=11%  Similarity=0.201  Sum_probs=68.0

Q ss_pred             ceeEEEeeCCC-----------cEEEEEEecCccccccccccccCCCceeEEEeeCCCCCCccEEEEEecC-CeEEEEEe
Q 022111          175 VQKLASCGCDN-----------TVKVWKMYNGIWKMDCFPALQMHSDWVRSVAWAPNLGLPKSTIASASQD-GTVVIWTC  242 (302)
Q Consensus       175 ~~~l~s~~~D~-----------~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~l~s~s~D-~~i~iwd~  242 (302)
                      ++.++-|+.+.           .+.+||..++.|.... .....|.......++.+++    ..++.|+.+ ..+.+||.
T Consensus        31 gkv~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~-~~~~~~~~~~~~~~~~~~g----~i~v~Gg~~~~~~~~yd~  105 (387)
T d1k3ia3          31 GRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRT-VTVTKHDMFCPGISMDGNG----QIVVTGGNDAKKTSLYDS  105 (387)
T ss_dssp             TEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCE-EEECSCCCSSCEEEECTTS----CEEEECSSSTTCEEEEEG
T ss_pred             CEEEEEEeecCcccCCCCCceeEEEEEECCCCcEeecC-CCCCCcccceeEEEEecCC----cEEEeecCCCcceeEecC
Confidence            56666666421           3678999888765321 1112333333455677775    677777665 57999998


Q ss_pred             ccCCcceeeeeeccCCCcEEEEEEccCCCEEEEecC-------CceEEeeecCCceEEEeee
Q 022111          243 AKEGEQWEGRVLKDFKTPVWSVSWSLTGNLLAVADA-------NNVTLWKEAVDGEWQQVSV  297 (302)
Q Consensus       243 ~~~~~~~~~~~~~~~~~~v~~~~~spdg~~la~~~~-------d~i~~w~~~~~~~~~~~~~  297 (302)
                      ...  .|...-.......--+++..+||++++.++.       +.+.+|+.. ...|++...
T Consensus       106 ~~~--~w~~~~~~~~~r~~~~~~~~~dG~v~v~GG~~~~~~~~~~v~~yd~~-~~~W~~~~~  164 (387)
T d1k3ia3         106 SSD--SWIPGPDMQVARGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPS-SKTWTSLPN  164 (387)
T ss_dssp             GGT--EEEECCCCSSCCSSCEEEECTTSCEEEECCCCCSSSCCCCEEEEETT-TTEEEEETT
T ss_pred             ccC--cccccccccccccccceeeecCCceeeeccccccccccceeeeecCC-CCceeecCC
Confidence            764  3421110111111235666789999999865       247888854 578987653

>d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Tricorn protease N-terminal domain
family: Tricorn protease N-terminal domain
domain: Tricorn protease N-terminal domain
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=94.75  E-value=0.071  Score=41.35  Aligned_cols=90  Identities=11%  Similarity=0.119  Sum_probs=51.4

Q ss_pred             eeEEEeeCCCcEEEEEEecCccccccccccccCCCceeEEEeeCCCCCCccEEEEEe-cC---CeEEEEEeccCCcceee
Q 022111          176 QKLASCGCDNTVKVWKMYNGIWKMDCFPALQMHSDWVRSVAWAPNLGLPKSTIASAS-QD---GTVVIWTCAKEGEQWEG  251 (302)
Q Consensus       176 ~~l~s~~~D~~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~l~s~s-~D---~~i~iwd~~~~~~~~~~  251 (302)
                      +++|-.+ ++.|.+.|+.++.     ...+..+.+.+...+||||+    +.||-.+ .+   ....||-+........ 
T Consensus        13 ~~v~f~~-~~dl~~~d~~~g~-----~~~Lt~~~~~~~~p~~SPDG----~~iaf~~~~~~~~~~~~i~~~~~~~g~~~-   81 (281)
T d1k32a2          13 DRIIFVC-CDDLWEHDLKSGS-----TRKIVSNLGVINNARFFPDG----RKIAIRVMRGSSLNTADLYFYNGENGEIK-   81 (281)
T ss_dssp             TEEEEEE-TTEEEEEETTTCC-----EEEEECSSSEEEEEEECTTS----SEEEEEEEESTTCCEEEEEEEETTTTEEE-
T ss_pred             CEEEEEe-CCcEEEEECCCCC-----EEEEecCCCcccCEEECCCC----CEEEEEEeeCCCCCceEEEEEEecCCceE-
Confidence            4444333 3457777887653     23345567788999999996    6666443 22   2334554443222111 


Q ss_pred             eee------ccCCCcEEEEEEccCCCEEEEe
Q 022111          252 RVL------KDFKTPVWSVSWSLTGNLLAVA  276 (302)
Q Consensus       252 ~~~------~~~~~~v~~~~~spdg~~la~~  276 (302)
                      .+.      ..........+|+|||+.|+..
T Consensus        82 ~lt~~~~~~~~~~~~~~~~~~spdg~~l~~~  112 (281)
T d1k32a2          82 RITYFSGKSTGRRMFTDVAGFDPDGNLIIST  112 (281)
T ss_dssp             ECCCCCEEEETTEECSEEEEECTTCCEEEEE
T ss_pred             EeeecCCCccCccccccccccCCCCCEEEEE
Confidence            111      1112235678999999999876

>d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Regucalcin
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=94.25  E-value=0.94  Score=35.62  Aligned_cols=205  Identities=7%  Similarity=-0.016  Sum_probs=108.8

Q ss_pred             EEeeCCCCCCEEEEEeCCCeEEEEEcCCCCceeEEEEecCCCCCeeEEEecCCCCCcEEEEEecCCcEEEEEecCCCCee
Q 022111           61 VAWAHPKFGSILASCSYDGQVIIWKEGNQNDWTQAHTFNDHKSSVNSIAWAPHELGLSLACGSSDGNISVFTATADGGWD  140 (302)
Q Consensus        61 v~~~~~~~~~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~h~~~i~~l~~~pd~~~~~l~sg~~d~~v~~~~~~~~~~~~  140 (302)
                      ..|.+. ++.++.+--..++|.-||..++.    ...+. ....+.++++.++  +.++++ +.+ .+.++|..+. ...
T Consensus        23 p~wd~~-~~~l~wvDi~~~~I~r~d~~~g~----~~~~~-~~~~~~~i~~~~d--g~l~va-~~~-gl~~~d~~tg-~~~   91 (295)
T d2ghsa1          23 PTFDPA-SGTAWWFNILERELHELHLASGR----KTVHA-LPFMGSALAKISD--SKQLIA-SDD-GLFLRDTATG-VLT   91 (295)
T ss_dssp             EEEETT-TTEEEEEEGGGTEEEEEETTTTE----EEEEE-CSSCEEEEEEEET--TEEEEE-ETT-EEEEEETTTC-CEE
T ss_pred             CeEECC-CCEEEEEECCCCEEEEEECCCCe----EEEEE-CCCCcEEEEEecC--CCEEEE-EeC-ccEEeecccc-eee
Confidence            446543 35565555567888888887652    22222 3456888888776  545544 444 5777776533 222


Q ss_pred             e-eeeccc-CCCCeEEEEeCCCCCCCceeecccCCCceeEEEeeC----CCcEEEEEEecCccccccccccccCCCceeE
Q 022111          141 T-TRIDQA-HPVGVTSVSWAPAMAPGALVGLGLLDPVQKLASCGC----DNTVKVWKMYNGIWKMDCFPALQMHSDWVRS  214 (302)
Q Consensus       141 ~-~~~~~~-h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~----D~~v~iwd~~~~~~~~~~~~~~~~h~~~v~~  214 (302)
                      . ...... .....+.+...|+              |.+.++...    .+.-.+|.+..+...  .  .+. .-..-+.
T Consensus        92 ~l~~~~~~~~~~~~nd~~vd~~--------------G~iw~~~~~~~~~~~~g~l~~~~~g~~~--~--~~~-~~~~~Ng  152 (295)
T d2ghsa1          92 LHAELESDLPGNRSNDGRMHPS--------------GALWIGTMGRKAETGAGSIYHVAKGKVT--K--LFA-DISIPNS  152 (295)
T ss_dssp             EEECSSTTCTTEEEEEEEECTT--------------SCEEEEEEETTCCTTCEEEEEEETTEEE--E--EEE-EESSEEE
T ss_pred             EEeeeecCCCcccceeeEECCC--------------CCEEEEeccccccccceeEeeecCCcEE--E--Eee-ccCCcce
Confidence            1 111100 0112444555443              333333221    223456666554211  1  111 1123478


Q ss_pred             EEeeCCCCCCccEEEEEecCCeEEEEEeccCCccee--eee---eccCCCcEEEEEEccCCCEEEEecC-CceEEeeecC
Q 022111          215 VAWAPNLGLPKSTIASASQDGTVVIWTCAKEGEQWE--GRV---LKDFKTPVWSVSWSLTGNLLAVADA-NNVTLWKEAV  288 (302)
Q Consensus       215 v~~~p~~~~~~~~l~s~s~D~~i~iwd~~~~~~~~~--~~~---~~~~~~~v~~~~~spdg~~la~~~~-d~i~~w~~~~  288 (302)
                      ++|+|++   ...+++-+..+.|..++++.......  ...   ..+......++++..+|++.++.-. ..|..|+- +
T Consensus       153 ~~~s~d~---~~l~~~dt~~~~I~~~~~d~~~~~~~~~~~~~~~~~~~~g~pdG~~vD~~GnlWva~~~~g~V~~~dp-~  228 (295)
T d2ghsa1         153 ICFSPDG---TTGYFVDTKVNRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGHIWNARWGEGAVDRYDT-D  228 (295)
T ss_dssp             EEECTTS---CEEEEEETTTCEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSCEEEEEETTTEEEEECT-T
T ss_pred             eeecCCC---ceEEEeecccceeeEeeecccccccccceEEEeccCcccccccceEEcCCCCEEeeeeCCCceEEecC-C
Confidence            9999986   34677778888899888754321110  011   1223345778899999987766533 46888883 3


Q ss_pred             CceEEEeeecC
Q 022111          289 DGEWQQVSVVE  299 (302)
Q Consensus       289 ~~~~~~~~~~~  299 (302)
                      .+.......+.
T Consensus       229 G~~~~~i~lP~  239 (295)
T d2ghsa1         229 GNHIARYEVPG  239 (295)
T ss_dssp             CCEEEEEECSC
T ss_pred             CcEeeEecCCC
Confidence            44455555443

>d1v04a_ b.68.6.2 (A:) Serum paraoxonase/arylesterase 1, PON1 {Rabit (Oryctolagus cuniculus) [TaxId: 9986]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: Serum paraoxonase/arylesterase 1, PON1
domain: Serum paraoxonase/arylesterase 1, PON1
species: Rabit (Oryctolagus cuniculus) [TaxId: 9986]

Probab=87.26  E-value=6  Score=31.56  Aligned_cols=110  Identities=12%  Similarity=0.052  Sum_probs=62.1

Q ss_pred             eEEEe---eCCCcEEEEEEecCcccccccccccc-CCCceeEEEeeCCCCCCccEEEEEe--c-------------CCeE
Q 022111          177 KLASC---GCDNTVKVWKMYNGIWKMDCFPALQM-HSDWVRSVAWAPNLGLPKSTIASAS--Q-------------DGTV  237 (302)
Q Consensus       177 ~l~s~---~~D~~v~iwd~~~~~~~~~~~~~~~~-h~~~v~~v~~~p~~~~~~~~l~s~s--~-------------D~~i  237 (302)
                      +|+..   ....+|.+|++....+.+....+... .....++|....++    .+++|-.  .             -.+-
T Consensus       113 ~L~vvnH~~~~~~ieif~~~~~~~~l~~~~~v~~~~~~~pNDv~~~~~g----~fy~Tnd~~~~~~~~~~~e~~~~~~~g  188 (340)
T d1v04a_         113 YLLVVNHPGSSSTVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAVGPE----HFYATNDHYFIDPYLKSWEMHLGLAWS  188 (340)
T ss_dssp             EEEEEECSTTCCEEEEEEEETTTTEEEEEEEECCTTCSSEEEEEEEETT----EEEEEESCSCCSHHHHHHHHHTTCCCE
T ss_pred             EEEEEeccCCCceeEEEEEeCCCCeEEEEeecCCccccCccceEEecCC----CEEEecCccCcChhhhhhhHhhcCCce
Confidence            45554   34567999998765444333333221 22346788887764    5666631  1             0233


Q ss_pred             EEEEeccCCcceeeeeeccCCCcEEEEEEccCCCEEEEecCC--ceEEeeecCCceEEE
Q 022111          238 VIWTCAKEGEQWEGRVLKDFKTPVWSVSWSLTGNLLAVADAN--NVTLWKEAVDGEWQQ  294 (302)
Q Consensus       238 ~iwd~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~la~~~~d--~i~~w~~~~~~~~~~  294 (302)
                      .+|..+...    ...+.+.-.....|+++||+++|.++...  .|+.|+...++....
T Consensus       189 ~v~~~~~~~----~~~~~~~l~~pNGI~~s~d~~~lyVa~t~~~~i~~y~~~~~~~l~~  243 (340)
T d1v04a_         189 FVTYYSPND----VRVVAEGFDFANGINISPDGKYVYIAELLAHKIHVYEKHANWTLTP  243 (340)
T ss_dssp             EEEEECSSC----EEEEEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSCEEE
T ss_pred             eEEEEcCCc----eEEEcCCCCccceeEECCCCCEEEEEeCCCCeEEEEEeCCCcccce
Confidence            444443321    11222222347889999999988777543  688888866665444

>d1utca2 b.69.6.1 (A:4-330) Clathrin heavy-chain terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Clathrin heavy-chain terminal domain
family: Clathrin heavy-chain terminal domain
domain: Clathrin heavy-chain terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=84.71  E-value=7.7  Score=30.48  Aligned_cols=161  Identities=9%  Similarity=0.139  Sum_probs=76.8

Q ss_pred             CEEEEeeCCCcEEEEeecCCCceEEEEecCccc--CeEEEEeeCCCCCCEEEEEe-------CCCeEEEEEcCCCCceeE
Q 022111           24 KRLATASSDSSIKIIGLSNSASQHLATLKGHRG--PVWQVAWAHPKFGSILASCS-------YDGQVIIWKEGNQNDWTQ   94 (302)
Q Consensus        24 ~~l~s~~~d~~v~lw~~~~~~~~~~~~~~~h~~--~v~~v~~~~~~~~~~l~s~s-------~D~~i~iwd~~~~~~~~~   94 (302)
                      +.|+-. .+..|+-|++++.. ++.+.+.-|..  ...-+.|..+.+.++++-.+       -.|.+.||..+..    .
T Consensus       114 ~~L~lV-T~taVYHW~~~g~s-~P~k~fdR~~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~i~G~mQLYS~er~----~  187 (327)
T d1utca2         114 NTVALV-TDNAVYHWSMEGES-QPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRK----V  187 (327)
T ss_dssp             SEEEEE-CSSEEEEEESSSSC-CCEEEEECCGGGTTCEEEEEEECTTSCEEEEEEEEEETTEEEEEEEEEETTTT----E
T ss_pred             CEEEEE-cCCceEEEcccCCC-CchhhhhhcccccCceEEEEEECCCCCEEEEEeEecCCCceeEEEEEEEeccC----c
Confidence            344433 24568888885433 34555554432  22234444444467654332       2467788887653    3


Q ss_pred             EEEecCCCCCeeEEEecCCC-CCcEEEEEec---CCcEEEEEecCCCCeeeeeecccCCCCeEEEEeCCCCCCCceeecc
Q 022111           95 AHTFNDHKSSVNSIAWAPHE-LGLSLACGSS---DGNISVFTATADGGWDTTRIDQAHPVGVTSVSWAPAMAPGALVGLG  170 (302)
Q Consensus        95 ~~~~~~h~~~i~~l~~~pd~-~~~~l~sg~~---d~~v~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~  170 (302)
                      -+.+.+|.+....+.+.-+. ....++.+..   .+++.+.++.....-.     .........+-|.|+....--+++.
T Consensus       188 sQ~ieGhaa~F~~~~~~g~~~~~~lf~fa~r~~~~~kLhIiEig~~~~g~-----~~f~kk~vdi~fppea~~DFPvamq  262 (327)
T d1utca2         188 SQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGN-----QPFPKKAVDVFFPPEAQNDFPVAMQ  262 (327)
T ss_dssp             EEEECCSEEEEEEECCTTCSSCEEEEEEEEEETTEEEEEEEECSCCCTTC-----CCCCCEEEECCCCTTCTTCCEEEEE
T ss_pred             CccccceeeeeEEEEcCCCCCCceEEEEEECCCCCcEEEEEEcCCCccCC-----CCCcceeEEEECCccccCCcEEEEE
Confidence            45566776555555443111 1223333322   1355555543211000     0011112233344432211113333


Q ss_pred             cCCCceeEEEeeCCCcEEEEEEecC
Q 022111          171 LLDPVQKLASCGCDNTVKVWKMYNG  195 (302)
Q Consensus       171 ~~~~~~~l~s~~~D~~v~iwd~~~~  195 (302)
                      .++....+..-+.-|.+++||+.++
T Consensus       263 vs~kygiiyviTK~G~i~lyDleTg  287 (327)
T d1utca2         263 ISEKHDVVFLITKYGYIHLYDLETG  287 (327)
T ss_dssp             EETTTTEEEEEETTSEEEEEETTTC
T ss_pred             eeccCCEEEEEecCcEEEEEEcccc
Confidence            3333456666778899999999886

>d1npea_ b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Nidogen
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=81.94  E-value=8.8  Score=29.11  Aligned_cols=202  Identities=13%  Similarity=0.021  Sum_probs=102.3

Q ss_pred             ccceeEEEEccCCCEEEEe-eCCCcEEEEeecCCCceEEEEecCcccCeEEEEeeCCCCCCEEEEEeCCCeEEEEEcCCC
Q 022111           11 EDTVHDVAMDFYGKRLATA-SSDSSIKIIGLSNSASQHLATLKGHRGPVWQVAWAHPKFGSILASCSYDGQVIIWKEGNQ   89 (302)
Q Consensus        11 ~~~v~~~~~s~~~~~l~s~-~~d~~v~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~s~D~~i~iwd~~~~   89 (302)
                      ...+..++|++..++|.-. ..++.|+..++.....+.+  +..-...+.+|++... .+++..+-...+.|.+.++...
T Consensus        35 ~~~~~~ld~D~~~~~iywsd~~~~~I~~~~l~g~~~~~v--~~~~~~~p~~iAvD~~-~~~lY~~d~~~~~I~~~~~dg~  111 (263)
T d1npea_          35 AKVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTTI--IRQDLGSPEGIALDHL-GRTIFWTDSQLDRIEVAKMDGT  111 (263)
T ss_dssp             EEEEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEEE--ECTTCCCEEEEEEETT-TTEEEEEETTTTEEEEEETTSC
T ss_pred             CCcEEEEEEEeCCCEEEEEECCCCeEEEEEcccCCcEEE--EEeccccccEEEEecc-CCeEEEeccCCCEEEEEecCCc
Confidence            3346678888777666654 3557777777765333222  2222345678887532 2455556667788999888654


Q ss_pred             CceeEEEEecCCCCCeeEEEecCCCCCcEEEEEecCCcEEEEEecCCCCeeeeeecccCCCCeEEEEeCCCCCCCceeec
Q 022111           90 NDWTQAHTFNDHKSSVNSIAWAPHELGLSLACGSSDGNISVFTATADGGWDTTRIDQAHPVGVTSVSWAPAMAPGALVGL  169 (302)
Q Consensus        90 ~~~~~~~~~~~h~~~i~~l~~~pd~~~~~l~sg~~d~~v~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~  169 (302)
                      .. ..  .+......+..+++.|.. +.+..+-...+..+|+....++.-...... ..-.....++..+..        
T Consensus       112 ~~-~~--l~~~~l~~p~~l~vdp~~-g~ly~t~~~~~~~~I~r~~~dG~~~~~i~~-~~~~~P~glaiD~~~--------  178 (263)
T d1npea_         112 QR-RV--LFDTGLVNPRGIVTDPVR-GNLYWTDWNRDNPKIETSHMDGTNRRILAQ-DNLGLPNGLTFDAFS--------  178 (263)
T ss_dssp             SC-EE--EECSSCSSEEEEEEETTT-TEEEEEECCSSSCEEEEEETTSCCCEEEEC-TTCSCEEEEEEETTT--------
T ss_pred             eE-EE--EecccccCCcEEEEeccc-CcEEEeecCCCCcEEEEecCCCCCceeeee-ecccccceEEEeecC--------
Confidence            32 11  122334568899998874 444444333334455544433321111111 111223456555432        


Q ss_pred             ccCCCceeEEEeeCCCcEEEEEEecCccccccccccccCCCceeEEEeeCCCCCCccEEEEEecCCeEEEEEec
Q 022111          170 GLLDPVQKLASCGCDNTVKVWKMYNGIWKMDCFPALQMHSDWVRSVAWAPNLGLPKSTIASASQDGTVVIWTCA  243 (302)
Q Consensus       170 ~~~~~~~~l~s~~~D~~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~l~s~s~D~~i~iwd~~  243 (302)
                           +.++.+-...+.|...|+...... ..   +.+-.. -.+|++..     +....+-...+.|...|..
T Consensus       179 -----~~lYw~d~~~~~I~~~~~~g~~~~-~v---~~~~~~-P~~lav~~-----~~lYwtd~~~~~I~~~~~~  237 (263)
T d1npea_         179 -----SQLCWVDAGTHRAECLNPAQPGRR-KV---LEGLQY-PFAVTSYG-----KNLYYTDWKTNSVIAMDLA  237 (263)
T ss_dssp             -----TEEEEEETTTTEEEEEETTEEEEE-EE---EECCCS-EEEEEEET-----TEEEEEETTTTEEEEEETT
T ss_pred             -----cEEEEEeCCCCEEEEEECCCCCeE-EE---ECCCCC-cEEEEEEC-----CEEEEEECCCCEEEEEECC
Confidence                 244455556677777776543211 11   111111 24566642     1344454455666555554

>d1crua_ b.68.2.1 (A:) Soluble quinoprotein glucose dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Soluble quinoprotein glucose dehydrogenase
family: Soluble quinoprotein glucose dehydrogenase
domain: Soluble quinoprotein glucose dehydrogenase
species: Acinetobacter calcoaceticus [TaxId: 471]

Probab=81.40  E-value=13  Score=30.70  Aligned_cols=59  Identities=10%  Similarity=0.240  Sum_probs=34.2

Q ss_pred             CCCCeeEEEecCCCCCcEEEEEecCCcEEEEEecCCCCeeeeeecc-----cCCCCeEEEEeCCCC
Q 022111          101 HKSSVNSIAWAPHELGLSLACGSSDGNISVFTATADGGWDTTRIDQ-----AHPVGVTSVSWAPAM  161 (302)
Q Consensus       101 h~~~i~~l~~~pd~~~~~l~sg~~d~~v~~~~~~~~~~~~~~~~~~-----~h~~~v~~~~~~~~~  161 (302)
                      .-....+|+|.||  +.++++--..|.|++++...........+..     .-......++++|+.
T Consensus        25 ~L~~P~~la~~pd--g~llVter~~G~i~~v~~~~g~~~~i~~~~~~~~~~~ge~GLLgia~~Pdf   88 (450)
T d1crua_          25 NLNKPHALLWGPD--NQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPDF   88 (450)
T ss_dssp             CCSSEEEEEECTT--SCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTTT
T ss_pred             CCCCceEEEEeCC--CeEEEEEecCCEEEEEECCCCcEeecccCCccccccCCCCceeeEEeCCCC
Confidence            3456789999998  6677765557888887644322221121110     112356678888753

>d1v04a_ b.68.6.2 (A:) Serum paraoxonase/arylesterase 1, PON1 {Rabit (Oryctolagus cuniculus) [TaxId: 9986]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: Serum paraoxonase/arylesterase 1, PON1
domain: Serum paraoxonase/arylesterase 1, PON1
species: Rabit (Oryctolagus cuniculus) [TaxId: 9986]

Probab=81.09  E-value=11  Score=29.80  Aligned_cols=63  Identities=16%  Similarity=0.125  Sum_probs=38.3

Q ss_pred             CceeEEEeeCCCCCCccEEEEEecCCeEEEEEeccCCcceeeeeeccCCCcEEEEEEcc-CCCEEEEe
Q 022111          210 DWVRSVAWAPNLGLPKSTIASASQDGTVVIWTCAKEGEQWEGRVLKDFKTPVWSVSWSL-TGNLLAVA  276 (302)
Q Consensus       210 ~~v~~v~~~p~~~~~~~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp-dg~~la~~  276 (302)
                      ..-+.|+++||+   ...+++-+..+.|++|++........ ..........-.+.+.+ +|.+.+.+
T Consensus       206 ~~pNGI~~s~d~---~~lyVa~t~~~~i~~y~~~~~~~l~~-~~~~~l~~~pDNi~~d~~~g~lwva~  269 (340)
T d1v04a_         206 DFANGINISPDG---KYVYIAELLAHKIHVYEKHANWTLTP-LRVLSFDTLVDNISVDPVTGDLWVGC  269 (340)
T ss_dssp             SSEEEEEECTTS---SEEEEEEGGGTEEEEEEECTTSCEEE-EEEEECSSEEEEEEECTTTCCEEEEE
T ss_pred             CccceeEECCCC---CEEEEEeCCCCeEEEEEeCCCcccce-EEEecCCCCCCccEEecCCCEEEEEE
Confidence            457899999996   35667777889999999875432111 11112334455667754 45555444