Citrus Sinensis ID: 022138


Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300--
MASLAQAPSAMSTVGVLWTLPRSMRLVNFKTSHAPTDDADYKILNKNSNIFETLSSDNTAEAPATKTEEVTDANNQPLVQLQFLKWPMWLLGPCILLGTGMVPTLWLPISSIFLGPNIASLLSLIGLDCIFNIGATLFLLMADSCARSKNTTRACNSKPPFSYKFWNMVANTTGFIIPLLMLFGSQKGFLQPQLPFIPFAVLLGPYLLLLSIQILTEMLTWHWQSPVWLVTPVVYESYRVLQLMRGLKLGAELSAPAWIVHTVRGLVCWWILILGVQLMRVAWFAGFTSQARRQQSPASADG
cccccccccccccccccccccccccccccccccccccccccccccccccEEEEccccccccccccccHHHHHccccccccccccccccHHHHHHHHHHHcccccccHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHcccccEEEEcEEHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccc
cccHccccccccEcccccHccHHHccccccccEccccccccccccccccEEEEcccccccccccccccccEEcccccccHEEEccccEEHHHHHHHHHHHHccccEccHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccc
maslaqapsamSTVGVlwtlprsmrlvnfktshaptddadykiLNKNSNIfetlssdntaeapatkteevtdannqplvqlqflkwpmwllgpcillgtgmvptlwlpissiflgpNIASLLSLIGLDCIFNIGATLFLLMADScarsknttracnskppfsyKFWNMVANTTGFIIPLLMlfgsqkgflqpqlpfipFAVLLGPYLLLLSIQILTEMLTwhwqspvwlvtpVVYESYRVLQLMRGLKLgaelsapaWIVHTVRGLVCWWILILGVQLMRVAWFAgftsqarrqqspasadg
maslaqapsamstvGVLWTLPRSMRLVNFKTshaptddadykILNKNSNIFetlssdntaEAPATKteevtdannqPLVQLQFLKWPMWLLGPCILLGTGMVPTLWLPISSIFLGPNIASLLSLIGLDCIFNIGATLFLLMADSCARSKNTTRACNSKPPFSYKFWNMVANTTGFIIPLLMLFGSQKGFLQPQLPFIPFAVLLGPYLLLLSIQILTEMLTWHWQSPVWLVTPVVYESYRVLQLMRGLKLGAELSAPAWIVHTVRGLVCWWILILGVQLMRVAWFAGFTSqarrqqspasadg
MASLAQAPSAMSTVGVLWTLPRSMRLVNFKTSHAPTDDADYKILNKNSNIFETLSSDNTAEAPATKTEEVTDANNQPLVQLQFLKWPMWLLGPCILLGTGMVPTLWLPISSIFLGPNIASLLSLIGLDCIFNIGATLFLLMADSCARSKNTTRACNSKPPFSYKFWNMVANTTGFIIPLLMLFGSQKGFLQPQLPFIPFAVLLGPYLLLLSIQILTEMLTWHWQSPVWLVTPVVYESYRVLQLMRGLKLGAELSAPAWIVHTVRGLVCWWILILGVQLMRVAWFAGFTSQARRQQSPASADG
************TVGVLWTLPRSMRLVNFKTSH*****ADYKILN*******************************PLVQLQFLKWPMWLLGPCILLGTGMVPTLWLPISSIFLGPNIASLLSLIGLDCIFNIGATLFLLMADSCARSKNTTRACNSKPPFSYKFWNMVANTTGFIIPLLMLFGSQKGFLQPQLPFIPFAVLLGPYLLLLSIQILTEMLTWHWQSPVWLVTPVVYESYRVLQLMRGLKLGAELSAPAWIVHTVRGLVCWWILILGVQLMRVAWFAGFT**************
*********AMSTVGVLWTLPRSMRLVNFKTSHAPTD******LN***********************************LQFLKWPMWLLGPCILLGTGMVPTLWLPISSIFLGPNIASLLSLIGLDCIFNIGATLFLLMADSCAR*************FSYKFWNMVANTTGFIIPLLMLFGSQKGFLQPQLPFIPFAVLLGPYLLLLSIQILTEMLTWHWQSPVWLVTPVVYESYRVLQLMRGLKLGAELSAPAWIVHTVRGLVCWWILILGVQLMRVAWFAGF***************
***********STVGVLWTLPRSMRLVNFKTSHAPTDDADYKILNKNSNIFETLSSDNTAEAPATKTEEVTDANNQPLVQLQFLKWPMWLLGPCILLGTGMVPTLWLPISSIFLGPNIASLLSLIGLDCIFNIGATLFLLMADSCARSKNTTRACNSKPPFSYKFWNMVANTTGFIIPLLMLFGSQKGFLQPQLPFIPFAVLLGPYLLLLSIQILTEMLTWHWQSPVWLVTPVVYESYRVLQLMRGLKLGAELSAPAWIVHTVRGLVCWWILILGVQLMRVAWFAGFT**************
***********STVGVLWTLPRSMRLVNFKTSHAPTDDADYKILNKNSNIFETLSSDNTAEAPATKTEEVTDANNQPLVQLQFLKWPMWLLGPCILLGTGMVPTLWLPISSIFLGPNIASLLSLIGLDCIFNIGATLFLLMADSCARSKNTTRACNSKPPFSYKFWNMVANTTGFIIPLLMLFGSQKGFLQPQLPFIPFAVLLGPYLLLLSIQILTEMLTWHWQSPVWLVTPVVYESYRVLQLMRGLKLGAELSAPAWIVHTVRGLVCWWILILGVQLMRVAWFAGFTSQ************
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooo
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiii
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooo
SSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooo
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiii
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MASLAQAPSAMSTVGVLWTLPRSMRLVNFKTSHAPTDDADYKILNKNSNIFETLSSDNTAEAPATKTEEVTDANNQPLVQLQFLKWPMWLLGPCILLGTGMVPTLWLPISSIFLGPNIASLLSLIGLDCIFNIGATLFLLMADSCARSKNTTRACNSKPPFSYKFWNMVANTTGFIIPLLMLFGSQKGFLQPQLPFIPFAVLLGPYLLLLSIQILTEMLTWHWQSPVWLVTPVVYESYRVLQLMRGLKLGAELSAPAWIVHTVRGLVCWWILILGVQLMRVAWFAGFTSQARRQQSPASADG
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST ?

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query302
118489441332 unknown [Populus trichocarpa x Populus d 1.0 0.909 0.668 1e-122
296089209 433 unnamed protein product [Vitis vinifera] 1.0 0.697 0.674 1e-121
359489458332 PREDICTED: uncharacterized protein LOC10 1.0 0.909 0.674 1e-121
356496330343 PREDICTED: uncharacterized protein LOC10 0.897 0.790 0.737 1e-110
255541184342 conserved hypothetical protein [Ricinus 0.887 0.783 0.745 1e-108
357469915344 hypothetical protein MTR_4g027070 [Medic 0.887 0.779 0.705 1e-105
449469343344 PREDICTED: uncharacterized protein LOC10 0.870 0.764 0.670 1e-104
42572745 404 uncharacterized protein [Arabidopsis tha 0.870 0.650 0.616 4e-96
42570499329 uncharacterized protein [Arabidopsis tha 0.864 0.793 0.623 2e-95
30695235236 uncharacterized protein [Arabidopsis tha 0.731 0.936 0.696 4e-89
>gi|118489441|gb|ABK96523.1| unknown [Populus trichocarpa x Populus deltoides] Back     alignment and taxonomy information
 Score =  444 bits (1143), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 222/332 (66%), Positives = 258/332 (77%), Gaps = 30/332 (9%)

Query: 1   MASLAQAPSAMSTVGVLWTLPRSMRL----------------VNFKT------------- 31
           MASL +AP  MST+       R ++L                VN  T             
Sbjct: 1   MASLVKAPPTMSTINAHQVHLRKLKLLSNLNMHHGLRFPRIHVNHTTVCCAKLTPWEPSP 60

Query: 32  -SHAPTDDADYKILNKNSNIFETLSSDNTAEAPATKTEEVTDANNQPLVQLQFLKWPMWL 90
            ++APT DA   +L K SNIFETL S++TAEAPAT +EE+TD  N+ LVQ QFLKWPMWL
Sbjct: 61  VTYAPTIDASGNLLKKTSNIFETLKSEDTAEAPATNSEELTDTKNRSLVQFQFLKWPMWL 120

Query: 91  LGPCILLGTGMVPTLWLPISSIFLGPNIASLLSLIGLDCIFNIGATLFLLMADSCARSKN 150
           LGP +LL TGMVPTLWLP+SS+FLGPNIASLLSLIGLDCIFN+GATLFLLMADSC+RSKN
Sbjct: 121 LGPSLLLTTGMVPTLWLPLSSVFLGPNIASLLSLIGLDCIFNLGATLFLLMADSCSRSKN 180

Query: 151 TTRACNSKPPFSYKFWNMVANTTGFIIPLLMLFGSQKGFLQPQLPFIPFAVLLGPYLLLL 210
             + CNSKPP SYKFWN+VA  +GF+IPL+ L GSQKG L PQLPFIPFAVLLGPY+LLL
Sbjct: 181 QAQTCNSKPPLSYKFWNVVATVSGFVIPLMALLGSQKGTLLPQLPFIPFAVLLGPYMLLL 240

Query: 211 SIQILTEMLTWHWQSPVWLVTPVVYESYRVLQLMRGLKLGAELSAPAWIVHTVRGLVCWW 270
           S+QILTE+LTWHWQSPVWLVTPVVYESYR+LQLMRGLKLGAELSAP W++H +RGLV WW
Sbjct: 241 SVQILTELLTWHWQSPVWLVTPVVYESYRLLQLMRGLKLGAELSAPTWMLHMIRGLVSWW 300

Query: 271 ILILGVQLMRVAWFAGFTSQARRQQSPASADG 302
           ILILGVQLM VAWFAGF +++++Q SPA++ G
Sbjct: 301 ILILGVQLMSVAWFAGFAARSQQQHSPAASGG 332




Source: Populus trichocarpa x Populus deltoides

Species: Populus trichocarpa x Populus deltoides

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|296089209|emb|CBI38912.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|359489458|ref|XP_003633924.1| PREDICTED: uncharacterized protein LOC100854105 [Vitis vinifera] Back     alignment and taxonomy information
>gi|356496330|ref|XP_003517021.1| PREDICTED: uncharacterized protein LOC100779126 [Glycine max] Back     alignment and taxonomy information
>gi|255541184|ref|XP_002511656.1| conserved hypothetical protein [Ricinus communis] gi|223548836|gb|EEF50325.1| conserved hypothetical protein [Ricinus communis] Back     alignment and taxonomy information
>gi|357469915|ref|XP_003605242.1| hypothetical protein MTR_4g027070 [Medicago truncatula] gi|355506297|gb|AES87439.1| hypothetical protein MTR_4g027070 [Medicago truncatula] Back     alignment and taxonomy information
>gi|449469343|ref|XP_004152380.1| PREDICTED: uncharacterized protein LOC101219687 [Cucumis sativus] gi|449528182|ref|XP_004171085.1| PREDICTED: uncharacterized LOC101219687 [Cucumis sativus] Back     alignment and taxonomy information
>gi|42572745|ref|NP_974468.1| uncharacterized protein [Arabidopsis thaliana] gi|332646561|gb|AEE80082.1| uncharacterized protein [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|42570499|ref|NP_850729.2| uncharacterized protein [Arabidopsis thaliana] gi|7288007|emb|CAB81845.1| putative protein [Arabidopsis thaliana] gi|332646563|gb|AEE80084.1| uncharacterized protein [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|30695235|ref|NP_191618.2| uncharacterized protein [Arabidopsis thaliana] gi|186511244|ref|NP_001118866.1| uncharacterized protein [Arabidopsis thaliana] gi|332646562|gb|AEE80083.1| uncharacterized protein [Arabidopsis thaliana] gi|332646564|gb|AEE80085.1| uncharacterized protein [Arabidopsis thaliana] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query302
TAIR|locus:2103326404 AT3G60590 [Arabidopsis thalian 0.867 0.648 0.622 2.4e-92
TAIR|locus:2166330366 AT5G63040 "AT5G63040" [Arabido 0.692 0.571 0.245 4.5e-08
TAIR|locus:2198070340 AT1G48460 "AT1G48460" [Arabido 0.728 0.647 0.211 8e-05
TAIR|locus:2103326 AT3G60590 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 920 (328.9 bits), Expect = 2.4e-92, P = 2.4e-92
 Identities = 168/270 (62%), Positives = 213/270 (78%)

Query:    33 HAPTDDADYKILNKNSNIFETLSSDNTAEAPATKTEEVTDANNQPLVQLQFLKWPMWLLG 92
             HA  ++A   +L+K +N+FE++ S++  E    K +    A  +   Q+Q LKWP+WLLG
Sbjct:   136 HASAEEAADIVLDKTANVFESIVSESAEEE---KVD--MSAQQRTNSQVQVLKWPIWLLG 190

Query:    93 PCILLGTGMVPTLWLPISSIFLGPNIASLLSLIGLDCIFNIGATLFLLMADSCARSKNTT 152
             P +LL +GM PTLWLP+SS+FLG N+ SLLSLIGLDCIFN+GATLFLLMADSCAR K+ +
Sbjct:   191 PSVLLTSGMAPTLWLPLSSVFLGSNVVSLLSLIGLDCIFNLGATLFLLMADSCARPKDPS 250

Query:   153 RACNSKPPFSYKFWNMVANTTGFIIPLLMLFGSQKGFL---QPQLPFIPFAVLLGPYLLL 209
             ++CNSKPPFSYKFWNM +   GF++P+L+LFGSQ G L   QPQ+PF+  AV+L PY +L
Sbjct:   251 QSCNSKPPFSYKFWNMFSLIIGFLVPMLLLFGSQSGLLASLQPQIPFLSSAVILFPYFIL 310

Query:   210 LSIQILTEMLTWHWQSPVWLVTPVVYESYRVLQLMRGLKLGAELSAPAWIVHTVRGLVCW 269
             L++Q LTE+LTWHWQSPVWLVTPVVYE+YR+LQLMRGL L AE++AP W+VH +RGLV W
Sbjct:   311 LAVQTLTEILTWHWQSPVWLVTPVVYEAYRILQLMRGLTLSAEVNAPVWVVHMLRGLVSW 370

Query:   270 WILILGVQLMRVAWFAGFTSQARRQQSPAS 299
             W+LILG+QLMRVAWFAGF S+    Q P S
Sbjct:   371 WVLILGMQLMRVAWFAGFASRTTTGQQPQS 400




GO:0005739 "mitochondrion" evidence=ISM
GO:0009706 "chloroplast inner membrane" evidence=IDA
GO:0009941 "chloroplast envelope" evidence=IDA
GO:0009507 "chloroplast" evidence=IDA
GO:0009536 "plastid" evidence=IDA
TAIR|locus:2166330 AT5G63040 "AT5G63040" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2198070 AT1G48460 "AT1G48460" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!


Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Your Input:
GSVIVG00026422001
SubName- Full=Chromosome chr15 scaffold_37, whole genome shotgun sequence; (363 aa)
(Vitis vinifera)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Conserved Domains Detected by HHsearch ?

No hit with probability above 80.00


Homologous Structure Templates

Structure Templates Detected by BLAST ?

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

No hit with e-value below 0.005

Structure Templates Detected by HHsearch ?

No hit with probability above 80.00


Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch ?

No hit with probability above 80.00